Citrus Sinensis ID: 021657

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------31
Protein Sequence
MEILTGHQDNAEFALAMCPTEPYVLSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKVVDFHWNASDPWTVVSVSDDCDSTGGGGTLQIWRMSDLIYRPQDEVLAELEKFKAHVISCTSKP
Secondary Structure (PSIPRED)
ccccccccccEEEEEEEcccccEEEEEcccccEEEEEcccccccccccccEEEEEcccccEEEEccccccccEEEccccccccEEEEEccccEEEEEEEccccccEEEEEEccccEEEEEccccccccccccccccccEEEEEEccccccEEEEccccccEEEEEccccccccccccEEEcccccccEEEEEEccccccEEEEEEccccEEEEEcccccccccccccccccccEEEEEcccccccEEEEEEccccccEEEEEcccccccccccEEEEEEcccccccccccEEEEcccccccEEEEEEcc
Secondary Structure Prediction (SSPRO)
cccEEcccccEEEEEEEcccccEEEEEccccEEEEEEcccccEEEEcccccEEEEEEcccccEEEEcccccEEEEEEcccccEEEEEEcccccEEEEEEcccccEEEEEEccccEEEEEEccccccccEEEEccccccEEEEEEccccccEEEEEccccEEEEEEcccccccccccEEEEEccccccEEEEEEcccccEEEEEcccccEEEEEEccccccEEccccccccccccEEEEcccccccEEEEEEcccccEEEEEEcccccccccccEEEEEEcccccccccccEEEEEccccccEEEEEccc
Coil and Loop (DISEMBL)
meiltghqdnaefalamcptepyvlsggkdkSVVLWSIQdhitssatdpataksagssgsiikqspkpgdgndkaadgpsvgprgiynghedtvedvtfcpssaqefcsvgddsclilwdarvgtspvikvekahdadlhcvdwnplddnliltgsadnsvrmfdrrnltsngvgspinkfegHSAAVLCVqwspdkssvfgssaedgllNIWDYEKvgkkveqgprttnypaglffqhaghrdkvvdfhwnasdpwtvvsvsddcdstggggtlQIWRMsdliyrpqDEVLAELEKFKAHVISCTSKP
Flexible Loop (DISEMBL)
MEILTGHQDNAEFALAMCPTEPYVLSGGKDKSVVLWSIQDHitssatdpataksagssgsiikqspkpgdgndKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKVVDFHWNASDPWTVVSVSDDCDSTGGGGTLQIWRMSDLIYRPQDEVLAELEKFKAHVISCTSKP
Low Complexity Region (SEG)
MEILTGHQDNAEFALAMCPTEPYVLSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKVVDFHWNASDPWtvvsvsddcdstggggtLQIWRMSDLIYRPQDEVLAELEKFKAHVISCTSKP
Disordered region (IsUnstruct)
***********EFALAMCPTEPYVLSGGKDKSVVLWSIQDHI*******************************************IYNGHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKVVDFHWNASDPWTVVSVSDDCDSTGGGGTLQIWRMSDLIYRPQDEVLAELEKFKAHVISC****
Disordered Region (DISOPRED)
MEILTGHQDNAEFALAMCPTEPYVLSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGK*********NYPAGLFFQHAGHRDKVVDFHWNASDPWTVVSVSDDCDSTGGGGTLQIWRMSDLIYRPQDEVLAELEKFKAHVISCTSKP
Disordered Region (DISEMBL)
MEILTGHQDNAEFALAMCPTEPYVLSGGKDKSVVLWSIQDHIT*****************IIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKVVDFHWNASDPWTVVSVSDDCDSTGGGGTLQIWRMSDLIYRPQDEVLAELEKFKAH********
Disordered Region (DISPRO)
*EILTGHQDNAEFALAMCPTEPYVLSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKVVDFHWNASDPWTVVSVSDDCDSTGGGGTLQIWRMSDLIYRPQDEVLAELEKFKAHVISCTSKP
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MEILTGHQDNAEFALAMCPTEPYVLSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKVVDFHWNASDPWTVVSVSDDCDSTGGGGTLQIWRMSDLIYRPQDEVLAELEKFKAHVISCTSKP
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	309	2.2.26 [Sep-21-2011]
O22607	507	WD-40 repeat-containing p	yes	no	0.951	0.579	0.804	1e-144
Q9SU78	487	WD-40 repeat-containing p	no	no	0.948	0.601	0.787	1e-139
Q54SD4	423	Probable histone-binding	yes	no	0.779	0.569	0.320	2e-35
O22469	424	WD-40 repeat-containing p	no	no	0.757	0.551	0.301	4e-34
Q6P3H7	424	Histone-binding protein R	yes	no	0.644	0.469	0.367	2e-33
O93377	425	Histone-binding protein R	N/A	no	0.644	0.468	0.367	2e-33
Q5M7K4	425	Histone-binding protein R	yes	no	0.644	0.468	0.367	2e-33
Q60972	425	Histone-binding protein R	yes	no	0.644	0.468	0.367	2e-33
Q09028	425	Histone-binding protein R	yes	no	0.644	0.468	0.367	2e-33
Q3MHL3	425	Histone-binding protein R	yes	no	0.644	0.468	0.367	2e-33

>sp|O22607|MSI4_ARATH WD-40 repeat-containing protein MSI4 OS=Arabidopsis thaliana GN=MSI4 PE=1 SV=3

 Score =  512 bits (1318), Expect = e-144,   Method: Compositional matrix adjust.
 Identities = 247/307 (80%), Positives = 273/307 (88%), Gaps = 13/307 (4%)

Query: 3   ILTGHQDNAEFALAMCPTEPYVLSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSII 62
           ILTGHQDNAEFALAMCPTEP+VLSGGKDKSVVLWSIQDHIT+  TD      + SSGSII
Sbjct: 214 ILTGHQDNAEFALAMCPTEPFVLSGGKDKSVVLWSIQDHITTIGTD------SKSSGSII 267

Query: 63  KQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDAR 122
           KQ+   G+G DK  + P+VGPRG+Y+GHEDTVEDV F P+SAQEFCSVGDDSCLILWDAR
Sbjct: 268 KQT---GEGTDKN-ESPTVGPRGVYHGHEDTVEDVAFSPTSAQEFCSVGDDSCLILWDAR 323

Query: 123 VGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFE 182
            GT+PV KVEKAHDADLHCVDWNP DDNLILTGSADN+VR+FDRR LT+NGVGSPI KFE
Sbjct: 324 TGTNPVTKVEKAHDADLHCVDWNPHDDNLILTGSADNTVRLFDRRKLTANGVGSPIYKFE 383

Query: 183 GHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGH 242
           GH AAVLCVQWSPDKSSVFGSSAEDGLLNIWDY++V KK +   R    PAGLFFQHAGH
Sbjct: 384 GHKAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYDRVSKKSD---RAAKSPAGLFFQHAGH 440

Query: 243 RDKVVDFHWNASDPWTVVSVSDDCDSTGGGGTLQIWRMSDLIYRPQDEVLAELEKFKAHV 302
           RDKVVDFHWNASDPWT+VSVSDDC++TGGGGTLQIWRMSDLIYRP++EV+AELEKFK+HV
Sbjct: 441 RDKVVDFHWNASDPWTIVSVSDDCETTGGGGTLQIWRMSDLIYRPEEEVVAELEKFKSHV 500

Query: 303 ISCTSKP 309
           ++C SKP
Sbjct: 501 MTCASKP 507

Core histone-binding subunit that may target chromatin assembly factors, chromatin remodeling factors and histone deacetylases to their histone substrates in a manner that is regulated by nucleosomal DNA. Component of the flowering autonomous pathway which positively regulates flowering by promoting transcriptional repression of the flowering repressor FLC. May promote histone deacetylation at the FLC locus leading to the formation of repressive chromatin structures. Also negatively regulates cold-responsive genes.
Arabidopsis thaliana (taxid: 3702)

>sp|Q9SU78|MSI5_ARATH WD-40 repeat-containing protein MSI5 OS=Arabidopsis thaliana GN=MSI5 PE=2 SV=2

 Score =  495 bits (1274), Expect = e-139,   Method: Compositional matrix adjust.
 Identities = 241/306 (78%), Positives = 269/306 (87%), Gaps = 13/306 (4%)

Query: 3   ILTGHQDNAEFALAMCPTEPYVLSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSII 62
           +L GHQD+AEFALAMCPTEP+VLSGGKDKSV+LW+IQDHIT + +D   +KS GSS    
Sbjct: 194 LLIGHQDDAEFALAMCPTEPFVLSGGKDKSVILWNIQDHITMAGSD---SKSPGSS---F 247

Query: 63  KQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDAR 122
           KQ+   G+G+DK   GPSVGPRGIYNGH+DTVEDV FCPSSAQEFCSVGDDSCL+LWDAR
Sbjct: 248 KQT---GEGSDKTG-GPSVGPRGIYNGHKDTVEDVAFCPSSAQEFCSVGDDSCLMLWDAR 303

Query: 123 VGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFE 182
            GTSP +KVEKAHDADLHCVDWNP D+NLILTGSADN+VR+FDRRNLTSNGVGSP+ KFE
Sbjct: 304 TGTSPAMKVEKAHDADLHCVDWNPHDNNLILTGSADNTVRVFDRRNLTSNGVGSPVYKFE 363

Query: 183 GHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGH 242
           GH AAVLCVQWSPDKSSVFGSSAEDGLLNIWD ++VGKK E   R T  P GLFFQHAGH
Sbjct: 364 GHRAAVLCVQWSPDKSSVFGSSAEDGLLNIWDCDRVGKKSE---RATKTPDGLFFQHAGH 420

Query: 243 RDKVVDFHWNASDPWTVVSVSDDCDSTGGGGTLQIWRMSDLIYRPQDEVLAELEKFKAHV 302
           RDKVVDFHW+  +PWT+VSVSD+C+S GGGGTLQIWRMSDLIYRP+DEVL ELEKFK+HV
Sbjct: 421 RDKVVDFHWSLLNPWTIVSVSDNCESIGGGGTLQIWRMSDLIYRPEDEVLTELEKFKSHV 480

Query: 303 ISCTSK 308
            +CTSK
Sbjct: 481 FTCTSK 486

Core histone-binding subunit that may target chromatin assembly factors, chromatin remodeling factors and histone deacetylases to their histone substrates in a manner that is regulated by nucleosomal DNA.

Arabidopsis thaliana (taxid: 3702)

>sp|Q54SD4|RBBD_DICDI Probable histone-binding protein rbbD OS=Dictyostelium discoideum GN=rbbD PE=3 SV=1

 Score =  149 bits (376), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 93/290 (32%), Positives = 148/290 (51%), Gaps = 49/290 (16%)

Query: 4   LTGHQDNAEFALAMCP-TEPYVLSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSII 62
           LTGH+    + ++  P  E ++LS   D+S+ +W I           A +KS  +  ++ 
Sbjct: 170 LTGHKKEG-YGISWNPRKEGHLLSCSDDQSICMWDIS----------AASKSDSTLDAL- 217

Query: 63  KQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDAR 122
                                  IYNGH   VEDV +       F SVGDD  L++WD R
Sbjct: 218 ----------------------NIYNGHTSIVEDVAWHYIHDTFFGSVGDDKKLMIWDTR 255

Query: 123 VGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFE 182
            GT P+  VE AH+++++C+ +NP  + L+ TGS D +V ++D RNL     G+ ++   
Sbjct: 256 TGTKPIHVVE-AHNSEVNCLSFNPFCEFLVATGSTDKTVALWDMRNL-----GNRLHSLI 309

Query: 183 GHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGH 242
            H+  V  VQ+SP   +V  S   D  +N+WD  ++G++ +      + P  L F H GH
Sbjct: 310 SHTDEVFQVQFSPHNETVLASCGSDRRVNVWDLSRIGEE-QNNEDAADGPPELLFIHGGH 368

Query: 243 RDKVVDFHWNASDPWTVVSVSDDCDSTGGGGTLQIWRMSDLIYRPQDEVL 292
             K+ DF WN +DPW++ SV++D         LQIW+M++ IY  +++ L
Sbjct: 369 TSKISDFSWNPNDPWSIASVAED-------NILQIWQMAENIYNDREDDL 411

Core histone-binding subunit that may target chromatin assembly factors, chromatin remodeling factors and histone deacetylases to their histone substrates in a manner that is regulated by nucleosomal DNA. Component of several complexes which regulate chromatin metabolism.

Dictyostelium discoideum (taxid: 44689)

>sp|O22469|MSI3_ARATH WD-40 repeat-containing protein MSI3 OS=Arabidopsis thaliana GN=MSI3 PE=1 SV=2

 Score =  145 bits (366), Expect = 4e-34,   Method: Compositional matrix adjust.
 Identities = 86/285 (30%), Positives = 143/285 (50%), Gaps = 51/285 (17%)

Query: 4   LTGHQDNAEFALAMCP-TEPYVLSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSII 62
           L GH+    + LA     E Y+LSG +D+ + LW +    +++ATD              
Sbjct: 165 LMGHEQEG-YGLAWSSFKEGYLLSGSQDQRICLWDV----SATATDKV------------ 207

Query: 63  KQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDAR 122
                             + P  +Y GH+  +EDV +   +   F S GDD  L++WD R
Sbjct: 208 ------------------LNPMHVYEGHQSIIEDVAWHMKNENIFGSAGDDCQLVIWDLR 249

Query: 123 VGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFE 182
             T+ +    K H+ +++ + +NP ++ ++ T S+D++V +FD R LT+     P++   
Sbjct: 250 --TNQMQHQVKVHEREINYLSFNPFNEWVLATASSDSTVALFDLRKLTA-----PLHVLS 302

Query: 183 GHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVG-KKVEQGPRTTNYPAGLFFQHAG 241
            H   V  V+W P+  +V  SS ED  L +WD  +VG +++E      + P  L F H G
Sbjct: 303 KHEGEVFQVEWDPNHETVLASSGEDRRLMVWDINRVGDEQLEIELDAEDGPPELLFSHGG 362

Query: 242 HRDKVVDFHWNASDPWTVVSVSDDCDSTGGGGTLQIWRMSDLIYR 286
           H+ K+ DF WN  +PW + SV++D        +LQ+W+M++ IYR
Sbjct: 363 HKAKISDFAWNKDEPWVISSVAED-------NSLQVWQMAESIYR 400

Core histone-binding subunit that may target chromatin assembly factors, chromatin remodeling factors and histone deacetylases to their histone substrates in a manner that is regulated by nucleosomal DNA.

Arabidopsis thaliana (taxid: 3702)

>sp|Q6P3H7|RBBP4_DANRE Histone-binding protein RBBP4 OS=Danio rerio GN=rbbp4 PE=2 SV=3

 Score =  143 bits (360), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 79/215 (36%), Positives = 117/215 (54%), Gaps = 16/215 (7%)

Query: 77  DGPSVGPRGIYNGHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVG-TSPVIKVEKAH 135
           +G  V  + I+ GH   VEDV++       F SV DD  L++WD R   TS       AH
Sbjct: 213 EGKIVDAKTIFTGHTAVVEDVSWHLLHESLFGSVADDQKLMIWDTRSNNTSKPSHAVDAH 272

Query: 136 DADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWSP 195
            A+++C+ +NP  + ++ TGSAD +V ++D RNL        ++ FE H   +  VQWSP
Sbjct: 273 TAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLK-----LHSFESHKDEIFQVQWSP 327

Query: 196 DKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPR-TTNYPAGLFFQHAGHRDKVVDFHWNAS 254
              ++  SS  D  LN+WD  K+G+  EQ P    + P  L F H GH  K+ DF WN +
Sbjct: 328 HNETILASSGTDRRLNVWDLSKIGE--EQSPEDAEDGPPELLFIHGGHTAKISDFSWNPN 385

Query: 255 DPWTVVSVSDDCDSTGGGGTLQIWRMSDLIYRPQD 289
           +PW + SVS+D         +Q+W+M++ IY  +D
Sbjct: 386 EPWVICSVSED-------NIMQVWQMAENIYNDED 413

Core histone-binding subunit that may target chromatin assembly factors, chromatin remodeling factors and histone deacetylases to their histone substrates in a manner that is regulated by nucleosomal DNA.

Danio rerio (taxid: 7955)

>sp|O93377|RBP4A_XENLA Histone-binding protein RBBP4-A OS=Xenopus laevis GN=rbbp4-a PE=1 SV=3

 Score =  143 bits (360), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 79/215 (36%), Positives = 117/215 (54%), Gaps = 16/215 (7%)

Query: 77  DGPSVGPRGIYNGHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVG-TSPVIKVEKAH 135
           +G  V  + I+ GH   VEDV++       F SV DD  L++WD R   TS       AH
Sbjct: 213 EGKVVDAKTIFTGHTAVVEDVSWHLLHESLFGSVADDQKLMIWDTRSNNTSKPSHSVDAH 272

Query: 136 DADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWSP 195
            A+++C+ +NP  + ++ TGSAD +V ++D RNL        ++ FE H   +  VQWSP
Sbjct: 273 TAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLK-----LHSFESHKDEIFQVQWSP 327

Query: 196 DKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPR-TTNYPAGLFFQHAGHRDKVVDFHWNAS 254
              ++  SS  D  LN+WD  K+G+  EQ P    + P  L F H GH  K+ DF WN +
Sbjct: 328 HNETILASSGTDRRLNVWDLSKIGE--EQSPEDAEDGPPELLFIHGGHTAKISDFSWNPN 385

Query: 255 DPWTVVSVSDDCDSTGGGGTLQIWRMSDLIYRPQD 289
           +PW + SVS+D         +Q+W+M++ IY  +D
Sbjct: 386 EPWVICSVSED-------NIMQVWQMAENIYNDED 413

Core histone-binding subunit that may target chromatin assembly factors, chromatin remodeling factors and histone deacetylases to their histone substrates in a manner that is regulated by nucleosomal DNA.

Xenopus laevis (taxid: 8355)

>sp|Q5M7K4|RBBP4_XENTR Histone-binding protein RBBP4 OS=Xenopus tropicalis GN=rbbp4 PE=2 SV=3

 Score =  143 bits (360), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 79/215 (36%), Positives = 117/215 (54%), Gaps = 16/215 (7%)

Query: 77  DGPSVGPRGIYNGHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVG-TSPVIKVEKAH 135
           +G  V  + I+ GH   VEDV++       F SV DD  L++WD R   TS       AH
Sbjct: 213 EGKVVDAKTIFTGHTAVVEDVSWHLLHESLFGSVADDQKLMIWDTRSNNTSKPSHSVDAH 272

Query: 136 DADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWSP 195
            A+++C+ +NP  + ++ TGSAD +V ++D RNL        ++ FE H   +  VQWSP
Sbjct: 273 TAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLK-----LHSFESHKDEIFQVQWSP 327

Query: 196 DKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPR-TTNYPAGLFFQHAGHRDKVVDFHWNAS 254
              ++  SS  D  LN+WD  K+G+  EQ P    + P  L F H GH  K+ DF WN +
Sbjct: 328 HNETILASSGTDRRLNVWDLSKIGE--EQSPEDAEDGPPELLFIHGGHTAKISDFSWNPN 385

Query: 255 DPWTVVSVSDDCDSTGGGGTLQIWRMSDLIYRPQD 289
           +PW + SVS+D         +Q+W+M++ IY  +D
Sbjct: 386 EPWVICSVSED-------NIMQVWQMAENIYNDED 413

Core histone-binding subunit that may target chromatin assembly factors, chromatin remodeling factors and histone deacetylases to their histone substrates in a manner that is regulated by nucleosomal DNA.

Xenopus tropicalis (taxid: 8364)

>sp|Q60972|RBBP4_MOUSE Histone-binding protein RBBP4 OS=Mus musculus GN=Rbbp4 PE=1 SV=5

 Score =  143 bits (360), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 79/215 (36%), Positives = 117/215 (54%), Gaps = 16/215 (7%)

Query: 77  DGPSVGPRGIYNGHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVG-TSPVIKVEKAH 135
           +G  V  + I+ GH   VEDV++       F SV DD  L++WD R   TS       AH
Sbjct: 213 EGKVVDAKTIFTGHTAVVEDVSWHLLHESLFGSVADDQKLMIWDTRSNNTSKPSHSVDAH 272

Query: 136 DADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWSP 195
            A+++C+ +NP  + ++ TGSAD +V ++D RNL        ++ FE H   +  VQWSP
Sbjct: 273 TAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLK-----LHSFESHKDEIFQVQWSP 327

Query: 196 DKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPR-TTNYPAGLFFQHAGHRDKVVDFHWNAS 254
              ++  SS  D  LN+WD  K+G+  EQ P    + P  L F H GH  K+ DF WN +
Sbjct: 328 HNETILASSGTDRRLNVWDLSKIGE--EQSPEDAEDGPPELLFIHGGHTAKISDFSWNPN 385

Query: 255 DPWTVVSVSDDCDSTGGGGTLQIWRMSDLIYRPQD 289
           +PW + SVS+D         +Q+W+M++ IY  +D
Sbjct: 386 EPWVICSVSED-------NIMQVWQMAENIYNDED 413

Core histone-binding subunit that may target chromatin assembly factors, chromatin remodeling factors and histone deacetylases to their histone substrates in a manner that is regulated by nucleosomal DNA. Component of several complexes which regulate chromatin metabolism. These include the chromatin assembly factor 1 (CAF-1) complex, which is required for chromatin assembly following DNA replication and DNA repair; the core histone deacetylase (HDAC) complex, which promotes histone deacetylation and consequent transcriptional repression; the nucleosome remodeling and histone deacetylase complex (the NuRD complex), which promotes transcriptional repression by histone deacetylation and nucleosome remodeling; and the PRC2/EED-EZH2 complex, which promotes repression of homeotic genes during development; and the NURF (nucleosome remodeling factor) complex.

Mus musculus (taxid: 10090)

>sp|Q09028|RBBP4_HUMAN Histone-binding protein RBBP4 OS=Homo sapiens GN=RBBP4 PE=1 SV=3

 Score =  143 bits (360), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 79/215 (36%), Positives = 117/215 (54%), Gaps = 16/215 (7%)

Query: 77  DGPSVGPRGIYNGHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVG-TSPVIKVEKAH 135
           +G  V  + I+ GH   VEDV++       F SV DD  L++WD R   TS       AH
Sbjct: 213 EGKVVDAKTIFTGHTAVVEDVSWHLLHESLFGSVADDQKLMIWDTRSNNTSKPSHSVDAH 272

Query: 136 DADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWSP 195
            A+++C+ +NP  + ++ TGSAD +V ++D RNL        ++ FE H   +  VQWSP
Sbjct: 273 TAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLK-----LHSFESHKDEIFQVQWSP 327

Query: 196 DKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPR-TTNYPAGLFFQHAGHRDKVVDFHWNAS 254
              ++  SS  D  LN+WD  K+G+  EQ P    + P  L F H GH  K+ DF WN +
Sbjct: 328 HNETILASSGTDRRLNVWDLSKIGE--EQSPEDAEDGPPELLFIHGGHTAKISDFSWNPN 385

Query: 255 DPWTVVSVSDDCDSTGGGGTLQIWRMSDLIYRPQD 289
           +PW + SVS+D         +Q+W+M++ IY  +D
Sbjct: 386 EPWVICSVSED-------NIMQVWQMAENIYNDED 413

Core histone-binding subunit that may target chromatin assembly factors, chromatin remodeling factors and histone deacetylases to their histone substrates in a manner that is regulated by nucleosomal DNA. Component of several complexes which regulate chromatin metabolism. These include the chromatin assembly factor 1 (CAF-1) complex, which is required for chromatin assembly following DNA replication and DNA repair; the core histone deacetylase (HDAC) complex, which promotes histone deacetylation and consequent transcriptional repression; the nucleosome remodeling and histone deacetylase complex (the NuRD complex), which promotes transcriptional repression by histone deacetylation and nucleosome remodeling; the PRC2/EED-EZH2 complex, which promotes repression of homeotic genes during development; and the NURF (nucleosome remodeling factor) complex.

Homo sapiens (taxid: 9606)

>sp|Q3MHL3|RBBP4_BOVIN Histone-binding protein RBBP4 OS=Bos taurus GN=RBBP4 PE=1 SV=3

 Score =  143 bits (360), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 79/215 (36%), Positives = 117/215 (54%), Gaps = 16/215 (7%)

Query: 77  DGPSVGPRGIYNGHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVG-TSPVIKVEKAH 135
           +G  V  + I+ GH   VEDV++       F SV DD  L++WD R   TS       AH
Sbjct: 213 EGKVVDAKTIFTGHTAVVEDVSWHLLHESLFGSVADDQKLMIWDTRSNNTSKPSHSVDAH 272

Query: 136 DADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWSP 195
            A+++C+ +NP  + ++ TGSAD +V ++D RNL        ++ FE H   +  VQWSP
Sbjct: 273 TAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLK-----LHSFESHKDEIFQVQWSP 327

Query: 196 DKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPR-TTNYPAGLFFQHAGHRDKVVDFHWNAS 254
              ++  SS  D  LN+WD  K+G+  EQ P    + P  L F H GH  K+ DF WN +
Sbjct: 328 HNETILASSGTDRRLNVWDLSKIGE--EQSPEDAEDGPPELLFIHGGHTAKISDFSWNPN 385

Query: 255 DPWTVVSVSDDCDSTGGGGTLQIWRMSDLIYRPQD 289
           +PW + SVS+D         +Q+W+M++ IY  +D
Sbjct: 386 EPWVICSVSED-------NIMQVWQMAENIYNDED 413

Core histone-binding subunit that may target chromatin assembly factors, chromatin remodeling factors and histone deacetylases to their histone substrates in a manner that is regulated by nucleosomal DNA. Component of several complexes which regulate chromatin metabolism. These include the chromatin assembly factor 1 (CAF-1) complex, which is required for chromatin assembly following DNA replication and DNA repair; the core histone deacetylase (HDAC) complex, which promotes histone deacetylation and consequent transcriptional repression; the nucleosome remodeling and histone deacetylase complex (the NuRD complex), which promotes transcriptional repression by histone deacetylation and nucleosome remodeling; and the PRC2/EED-EZH2 complex, which promotes repression of homeotic genes during development; and the NURF (nucleosome remodeling factor) complex.

Bos taurus (taxid: 9913)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	309
255546107	503	WD-repeat protein, putative [Ricinus com	0.980	0.602	0.872	1e-159
224112132	502	nucleosome/chromatin assembly factor gro	0.980	0.603	0.882	1e-156
449489878	518	PREDICTED: WD-40 repeat-containing prote	0.983	0.586	0.846	1e-155
449435868	512	PREDICTED: WD-40 repeat-containing prote	0.983	0.593	0.846	1e-155
224122490	467	nucleosome/chromatin assembly factor gro	0.980	0.648	0.876	1e-154
356556284	508	PREDICTED: WD-40 repeat-containing prote	0.970	0.590	0.856	1e-154
356530364	513	PREDICTED: WD-40 repeat-containing prote	0.970	0.584	0.852	1e-154
356530366	504	PREDICTED: WD-40 repeat-containing prote	0.970	0.595	0.852	1e-154
346229125	508	FVE protein [Glycine max]	0.970	0.590	0.849	1e-153
61611729	515	FVE [Pisum sativum]	0.967	0.580	0.836	1e-152

>gi|255546107|ref|XP_002514113.1| WD-repeat protein, putative [Ricinus communis] gi|223546569|gb|EEF48067.1| WD-repeat protein, putative [Ricinus communis]

 Score =  565 bits (1457), Expect = e-159,   Method: Compositional matrix adjust.
 Identities = 267/306 (87%), Positives = 288/306 (94%), Gaps = 3/306 (0%)

Query: 3   ILTGHQDNAEFALAMCPTEPYVLSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSII 62
           ILTGHQDNAEFALAMCPTEP+VLSGGKDKSVVLWSIQDHIT+SATDPATAKS GS GSII
Sbjct: 200 ILTGHQDNAEFALAMCPTEPFVLSGGKDKSVVLWSIQDHITASATDPATAKSPGSGGSII 259

Query: 63  KQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDAR 122
           K++   G+GND+AA+ PSVGPRGIY GHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDAR
Sbjct: 260 KRA---GEGNDRAAESPSVGPRGIYQGHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDAR 316

Query: 123 VGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFE 182
           +G+SP +KVEKAH+ADLHCVDWNP D+NLI+TGSADNSVRMFDRRNLTSNGVG+P+ KFE
Sbjct: 317 IGSSPAVKVEKAHNADLHCVDWNPHDNNLIITGSADNSVRMFDRRNLTSNGVGTPVYKFE 376

Query: 183 GHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGH 242
           GH AAVLCVQWSPDKSSVFGSSAEDGLLNIWDY+KVGKK E+  R  N PAGLFFQHAGH
Sbjct: 377 GHKAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYDKVGKKTERATRAPNSPAGLFFQHAGH 436

Query: 243 RDKVVDFHWNASDPWTVVSVSDDCDSTGGGGTLQIWRMSDLIYRPQDEVLAELEKFKAHV 302
           RDKVVDFHWNASDPWT+VSVSDDCD+TGGGGTLQIWRMSDLIYRP+DEVLAELEKFK+HV
Sbjct: 437 RDKVVDFHWNASDPWTIVSVSDDCDTTGGGGTLQIWRMSDLIYRPEDEVLAELEKFKSHV 496

Query: 303 ISCTSK 308
           I CTSK
Sbjct: 497 IECTSK 502

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224112132|ref|XP_002332825.1| nucleosome/chromatin assembly factor group [Populus trichocarpa] gi|222833256|gb|EEE71733.1| nucleosome/chromatin assembly factor group [Populus trichocarpa]

 Score =  556 bits (1432), Expect = e-156,   Method: Compositional matrix adjust.
 Identities = 271/307 (88%), Positives = 283/307 (92%), Gaps = 4/307 (1%)

Query: 3   ILTGHQDNAEFALAMCPTEPYVLSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSII 62
           ILTGH DNAEFALAMCPTEPYVLSGGKDKSVVLWSIQDHITSSATDPAT KS GS GSII
Sbjct: 200 ILTGHLDNAEFALAMCPTEPYVLSGGKDKSVVLWSIQDHITSSATDPAT-KSPGSGGSII 258

Query: 63  KQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDAR 122
           K   K GDGNDKA DGPSVGPRGIY GHEDTVEDV FCPSSAQEFCSVGDDSCLILWDAR
Sbjct: 259 K---KAGDGNDKATDGPSVGPRGIYQGHEDTVEDVAFCPSSAQEFCSVGDDSCLILWDAR 315

Query: 123 VGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFE 182
            GT+P IKVEKAH+ADLHCVDWNP DDNLILTGSAD SV MFDRRNLTSNGVGSP+ KFE
Sbjct: 316 DGTNPAIKVEKAHNADLHCVDWNPHDDNLILTGSADTSVCMFDRRNLTSNGVGSPVYKFE 375

Query: 183 GHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGH 242
           GH+AAVLCVQWSPDK+SVFGSSAEDGLLNIWDYEKVGK+ E+  R  N PAGLFFQHAGH
Sbjct: 376 GHNAAVLCVQWSPDKASVFGSSAEDGLLNIWDYEKVGKRSERLTRALNSPAGLFFQHAGH 435

Query: 243 RDKVVDFHWNASDPWTVVSVSDDCDSTGGGGTLQIWRMSDLIYRPQDEVLAELEKFKAHV 302
           RDKVVDFHWNASDPWT+VSVSDDCD+TGGGGTLQIWRMSDLIYRP+DEVLAELEKFK+HV
Sbjct: 436 RDKVVDFHWNASDPWTLVSVSDDCDTTGGGGTLQIWRMSDLIYRPEDEVLAELEKFKSHV 495

Query: 303 ISCTSKP 309
           +SC SKP
Sbjct: 496 VSCASKP 502

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449489878|ref|XP_004158447.1| PREDICTED: WD-40 repeat-containing protein MSI4-like [Cucumis sativus]

 Score =  553 bits (1424), Expect = e-155,   Method: Compositional matrix adjust.
 Identities = 260/307 (84%), Positives = 283/307 (92%), Gaps = 3/307 (0%)

Query: 3   ILTGHQDNAEFALAMCPTEPYVLSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSII 62
           ILTGHQ+NAEFALAMCPTEPYVLSGGKDK VVLWSIQDHIT+SATD   +KS GS GSII
Sbjct: 215 ILTGHQENAEFALAMCPTEPYVLSGGKDKLVVLWSIQDHITTSATDAGASKSPGSGGSII 274

Query: 63  KQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDAR 122
           K   KPG+ NDKA+DGPS+GPRG+Y+GHEDTVEDVTFCPS+AQEFCSVGDDSCLILWDAR
Sbjct: 275 K---KPGEANDKASDGPSIGPRGVYHGHEDTVEDVTFCPSNAQEFCSVGDDSCLILWDAR 331

Query: 123 VGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFE 182
            G+SP +KVEKAH+ADLHCVDWNP DDNLI+TGSADNS+R+FDRRNLTSNGVGSPI KFE
Sbjct: 332 TGSSPAVKVEKAHNADLHCVDWNPHDDNLIITGSADNSIRLFDRRNLTSNGVGSPIYKFE 391

Query: 183 GHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGH 242
           GH AAVLCVQWSPDKSSVFGSSAEDGLLNIWDY+KVGKK E+  RT   P GLFFQHAGH
Sbjct: 392 GHKAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYDKVGKKTERATRTPAAPPGLFFQHAGH 451

Query: 243 RDKVVDFHWNASDPWTVVSVSDDCDSTGGGGTLQIWRMSDLIYRPQDEVLAELEKFKAHV 302
           RDKVVDFHWNA+DPWTVVSVSDDCD+TGGGGTLQIWRMSDLIYRP++EVLAELEKFK+HV
Sbjct: 452 RDKVVDFHWNAADPWTVVSVSDDCDTTGGGGTLQIWRMSDLIYRPEEEVLAELEKFKSHV 511

Query: 303 ISCTSKP 309
           I C +KP
Sbjct: 512 IECAAKP 518

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449435868|ref|XP_004135716.1| PREDICTED: WD-40 repeat-containing protein MSI4-like [Cucumis sativus]

 Score =  553 bits (1424), Expect = e-155,   Method: Compositional matrix adjust.
 Identities = 260/307 (84%), Positives = 283/307 (92%), Gaps = 3/307 (0%)

Query: 3   ILTGHQDNAEFALAMCPTEPYVLSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSII 62
           ILTGHQ+NAEFALAMCPTEPYVLSGGKDK VVLWSIQDHIT+SATD   +KS GS GSII
Sbjct: 209 ILTGHQENAEFALAMCPTEPYVLSGGKDKLVVLWSIQDHITTSATDAGASKSPGSGGSII 268

Query: 63  KQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDAR 122
           K   KPG+ NDKA+DGPS+GPRG+Y+GHEDTVEDVTFCPS+AQEFCSVGDDSCLILWDAR
Sbjct: 269 K---KPGEANDKASDGPSIGPRGVYHGHEDTVEDVTFCPSNAQEFCSVGDDSCLILWDAR 325

Query: 123 VGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFE 182
            G+SP +KVEKAH+ADLHCVDWNP DDNLI+TGSADNS+R+FDRRNLTSNGVGSPI KFE
Sbjct: 326 TGSSPAVKVEKAHNADLHCVDWNPHDDNLIITGSADNSIRLFDRRNLTSNGVGSPIYKFE 385

Query: 183 GHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGH 242
           GH AAVLCVQWSPDKSSVFGSSAEDGLLNIWDY+KVGKK E+  RT   P GLFFQHAGH
Sbjct: 386 GHKAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYDKVGKKTERATRTPAAPPGLFFQHAGH 445

Query: 243 RDKVVDFHWNASDPWTVVSVSDDCDSTGGGGTLQIWRMSDLIYRPQDEVLAELEKFKAHV 302
           RDKVVDFHWNA+DPWTVVSVSDDCD+TGGGGTLQIWRMSDLIYRP++EVLAELEKFK+HV
Sbjct: 446 RDKVVDFHWNAADPWTVVSVSDDCDTTGGGGTLQIWRMSDLIYRPEEEVLAELEKFKSHV 505

Query: 303 ISCTSKP 309
           I C +KP
Sbjct: 506 IECAAKP 512

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224122490|ref|XP_002330494.1| nucleosome/chromatin assembly factor group [Populus trichocarpa] gi|222872428|gb|EEF09559.1| nucleosome/chromatin assembly factor group [Populus trichocarpa]

 Score =  551 bits (1421), Expect = e-154,   Method: Compositional matrix adjust.
 Identities = 269/307 (87%), Positives = 281/307 (91%), Gaps = 4/307 (1%)

Query: 3   ILTGHQDNAEFALAMCPTEPYVLSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSII 62
           ILTGHQDNAEFALAMCPTEPYVLSGGKDK VVLWSIQDHITSSA+DPAT KS GS GSII
Sbjct: 165 ILTGHQDNAEFALAMCPTEPYVLSGGKDKLVVLWSIQDHITSSASDPAT-KSPGSGGSII 223

Query: 63  KQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDAR 122
           K   K GDG+DKA DGPSVGPRGIY GHEDTVEDV FCPSSAQEFCSVGDDSCLILWDAR
Sbjct: 224 K---KTGDGSDKATDGPSVGPRGIYQGHEDTVEDVAFCPSSAQEFCSVGDDSCLILWDAR 280

Query: 123 VGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFE 182
            GTSP IKVE+AH+ADLHCVDWNP DDNLILTGSAD SV MFDRRNLTSNGVG P+ KFE
Sbjct: 281 AGTSPAIKVERAHNADLHCVDWNPQDDNLILTGSADTSVCMFDRRNLTSNGVGLPVYKFE 340

Query: 183 GHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGH 242
           GH AAVLCVQWSPDK+SVFGSSAEDGLLNIWDYEKVGKK E+  R  + PAGLFFQHAGH
Sbjct: 341 GHKAAVLCVQWSPDKASVFGSSAEDGLLNIWDYEKVGKKTERPTRAPSSPAGLFFQHAGH 400

Query: 243 RDKVVDFHWNASDPWTVVSVSDDCDSTGGGGTLQIWRMSDLIYRPQDEVLAELEKFKAHV 302
           RDKVVDFHWNASDPWTVVSVSDDCD+TGGGGTLQIWRMSDLIYRP+DEVLAELEKFK+HV
Sbjct: 401 RDKVVDFHWNASDPWTVVSVSDDCDTTGGGGTLQIWRMSDLIYRPEDEVLAELEKFKSHV 460

Query: 303 ISCTSKP 309
           +SC SKP
Sbjct: 461 VSCASKP 467

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356556284|ref|XP_003546456.1| PREDICTED: WD-40 repeat-containing protein MSI4-like [Glycine max]

 Score =  551 bits (1420), Expect = e-154,   Method: Compositional matrix adjust.
 Identities = 262/306 (85%), Positives = 285/306 (93%), Gaps = 6/306 (1%)

Query: 3   ILTGHQDNAEFALAMCPTEPYVLSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSII 62
           ILTGHQDNAEFALAMCPTEPYVLSGGKDK+VVLWSI+DHITS+ATD      + S GSII
Sbjct: 206 ILTGHQDNAEFALAMCPTEPYVLSGGKDKTVVLWSIEDHITSAATD------SKSGGSII 259

Query: 63  KQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDAR 122
           KQ+ K G+GNDK ADGP+VGPRGIY GHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDAR
Sbjct: 260 KQNSKSGEGNDKTADGPTVGPRGIYCGHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDAR 319

Query: 123 VGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFE 182
           VG+SPV+KVEKAH+ADLHCVDWNP DDNLILTGSADNSVRMFDRRNLT+NGVGSPI+KFE
Sbjct: 320 VGSSPVVKVEKAHNADLHCVDWNPHDDNLILTGSADNSVRMFDRRNLTTNGVGSPIHKFE 379

Query: 183 GHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGH 242
           GH AAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKK+E+  ++ + P GLFFQHAGH
Sbjct: 380 GHKAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKIERTGKSISSPPGLFFQHAGH 439

Query: 243 RDKVVDFHWNASDPWTVVSVSDDCDSTGGGGTLQIWRMSDLIYRPQDEVLAELEKFKAHV 302
           RDKVVDFHWNA DPWT+VSVSDDC+STGGGGTLQIWRMSDLIYRP+DEVLAELEKFK+HV
Sbjct: 440 RDKVVDFHWNAYDPWTIVSVSDDCESTGGGGTLQIWRMSDLIYRPEDEVLAELEKFKSHV 499

Query: 303 ISCTSK 308
           ++C SK
Sbjct: 500 VACASK 505

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356530364|ref|XP_003533752.1| PREDICTED: WD-40 repeat-containing protein MSI4-like isoform 1 [Glycine max]

 Score =  549 bits (1415), Expect = e-154,   Method: Compositional matrix adjust.
 Identities = 261/306 (85%), Positives = 284/306 (92%), Gaps = 6/306 (1%)

Query: 3   ILTGHQDNAEFALAMCPTEPYVLSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSII 62
           ILTGHQDNAEFALAMCPTEPYVLSGGKDK+VVLWSI+DHITS+ATD      + S GSII
Sbjct: 211 ILTGHQDNAEFALAMCPTEPYVLSGGKDKTVVLWSIEDHITSAATD------SKSGGSII 264

Query: 63  KQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDAR 122
           KQ+ K G+GNDK ADGP+VGPRGIY GHEDTVEDV FCPSSAQEFCSVGDDSCLILWDAR
Sbjct: 265 KQNSKSGEGNDKTADGPTVGPRGIYCGHEDTVEDVAFCPSSAQEFCSVGDDSCLILWDAR 324

Query: 123 VGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFE 182
           VG+SPV+KVEKAH+ADLHCVDWNP DDNLILTGSADNSVRMFDRRNLT+NGVGSPI+KFE
Sbjct: 325 VGSSPVVKVEKAHNADLHCVDWNPHDDNLILTGSADNSVRMFDRRNLTTNGVGSPIHKFE 384

Query: 183 GHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGH 242
           GH AAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKK+E+  ++ + P GLFFQHAGH
Sbjct: 385 GHKAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKIERSGKSISSPPGLFFQHAGH 444

Query: 243 RDKVVDFHWNASDPWTVVSVSDDCDSTGGGGTLQIWRMSDLIYRPQDEVLAELEKFKAHV 302
           RDKVVDFHWNA DPWT+VSVSDDC+STGGGGTLQIWRMSDLIYRP+DEVLAELEKFK+HV
Sbjct: 445 RDKVVDFHWNAYDPWTIVSVSDDCESTGGGGTLQIWRMSDLIYRPEDEVLAELEKFKSHV 504

Query: 303 ISCTSK 308
           ++C SK
Sbjct: 505 VACASK 510

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356530366|ref|XP_003533753.1| PREDICTED: WD-40 repeat-containing protein MSI4-like isoform 2 [Glycine max]

 Score =  548 bits (1413), Expect = e-154,   Method: Compositional matrix adjust.
 Identities = 261/306 (85%), Positives = 284/306 (92%), Gaps = 6/306 (1%)

Query: 3   ILTGHQDNAEFALAMCPTEPYVLSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSII 62
           ILTGHQDNAEFALAMCPTEPYVLSGGKDK+VVLWSI+DHITS+ATD      + S GSII
Sbjct: 202 ILTGHQDNAEFALAMCPTEPYVLSGGKDKTVVLWSIEDHITSAATD------SKSGGSII 255

Query: 63  KQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDAR 122
           KQ+ K G+GNDK ADGP+VGPRGIY GHEDTVEDV FCPSSAQEFCSVGDDSCLILWDAR
Sbjct: 256 KQNSKSGEGNDKTADGPTVGPRGIYCGHEDTVEDVAFCPSSAQEFCSVGDDSCLILWDAR 315

Query: 123 VGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFE 182
           VG+SPV+KVEKAH+ADLHCVDWNP DDNLILTGSADNSVRMFDRRNLT+NGVGSPI+KFE
Sbjct: 316 VGSSPVVKVEKAHNADLHCVDWNPHDDNLILTGSADNSVRMFDRRNLTTNGVGSPIHKFE 375

Query: 183 GHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGH 242
           GH AAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKK+E+  ++ + P GLFFQHAGH
Sbjct: 376 GHKAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKIERSGKSISSPPGLFFQHAGH 435

Query: 243 RDKVVDFHWNASDPWTVVSVSDDCDSTGGGGTLQIWRMSDLIYRPQDEVLAELEKFKAHV 302
           RDKVVDFHWNA DPWT+VSVSDDC+STGGGGTLQIWRMSDLIYRP+DEVLAELEKFK+HV
Sbjct: 436 RDKVVDFHWNAYDPWTIVSVSDDCESTGGGGTLQIWRMSDLIYRPEDEVLAELEKFKSHV 495

Query: 303 ISCTSK 308
           ++C SK
Sbjct: 496 VACASK 501

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|346229125|gb|AEO21436.1| FVE protein [Glycine max]

 Score =  545 bits (1404), Expect = e-153,   Method: Compositional matrix adjust.
 Identities = 260/306 (84%), Positives = 283/306 (92%), Gaps = 6/306 (1%)

Query: 3   ILTGHQDNAEFALAMCPTEPYVLSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSII 62
           ILTGHQDNAEFALAMCPTEPYVLSGGKDK+VVLWSI+DHITS+ATD      + S GSII
Sbjct: 206 ILTGHQDNAEFALAMCPTEPYVLSGGKDKTVVLWSIEDHITSAATD------SKSGGSII 259

Query: 63  KQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDAR 122
           KQ+ K G+GNDK ADGP+VGPRGIY GHEDTVEDVTFCPSSAQEFCSVGDDSC ILWDAR
Sbjct: 260 KQNSKSGEGNDKTADGPTVGPRGIYCGHEDTVEDVTFCPSSAQEFCSVGDDSCPILWDAR 319

Query: 123 VGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFE 182
           VG+SPV+KVEKAH+ADLHCVDWNP DDNLILT SADNSVRMFDRRNLT+NGVGSPI+KFE
Sbjct: 320 VGSSPVVKVEKAHNADLHCVDWNPHDDNLILTESADNSVRMFDRRNLTTNGVGSPIHKFE 379

Query: 183 GHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGH 242
           GH AAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKK+E+  ++ + P GLFFQHAGH
Sbjct: 380 GHKAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKIERTGKSISSPPGLFFQHAGH 439

Query: 243 RDKVVDFHWNASDPWTVVSVSDDCDSTGGGGTLQIWRMSDLIYRPQDEVLAELEKFKAHV 302
           RDKVVDFHWNA DPWT+VSVSDDC+STGGGGTLQIWRMSDLIYRP+DEVLAELEKFK+HV
Sbjct: 440 RDKVVDFHWNAYDPWTIVSVSDDCESTGGGGTLQIWRMSDLIYRPEDEVLAELEKFKSHV 499

Query: 303 ISCTSK 308
           ++C SK
Sbjct: 500 VACASK 505

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|61611729|gb|AAX47182.1| FVE [Pisum sativum]

 Score =  543 bits (1399), Expect = e-152,   Method: Compositional matrix adjust.
 Identities = 256/306 (83%), Positives = 280/306 (91%), Gaps = 7/306 (2%)

Query: 3   ILTGHQDNAEFALAMCPTEPYVLSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSII 62
           ILTGHQDNAEFALAMCPTEPYVLSGGKDK+VVLWSI+DH+TS+ATD        S GSII
Sbjct: 214 ILTGHQDNAEFALAMCPTEPYVLSGGKDKTVVLWSIEDHVTSAATD-------KSGGSII 266

Query: 63  KQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDAR 122
           K + K G+GNDK  D PSVGPRGIY+GH+DTVEDV FCPSSAQEFCSVGDDSCLILWDAR
Sbjct: 267 KPNSKSGEGNDKTVDSPSVGPRGIYSGHDDTVEDVAFCPSSAQEFCSVGDDSCLILWDAR 326

Query: 123 VGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFE 182
           VG+SPV+KVEKAH+ADLHCVDWNP DDNLILTGSADNSVR+FDRRNLTSNGVGSPI+KFE
Sbjct: 327 VGSSPVVKVEKAHNADLHCVDWNPHDDNLILTGSADNSVRLFDRRNLTSNGVGSPIHKFE 386

Query: 183 GHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGH 242
            H AAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKK+E+  +T N P GLFFQHAGH
Sbjct: 387 AHKAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKIERAGKTINSPPGLFFQHAGH 446

Query: 243 RDKVVDFHWNASDPWTVVSVSDDCDSTGGGGTLQIWRMSDLIYRPQDEVLAELEKFKAHV 302
           RDKVVDFHWNA DPWT+VSVSDDC+STGGGGTLQIWRMSDL+YRP+DEVLAELEKFK+HV
Sbjct: 447 RDKVVDFHWNAYDPWTIVSVSDDCESTGGGGTLQIWRMSDLLYRPEDEVLAELEKFKSHV 506

Query: 303 ISCTSK 308
           ++C +K
Sbjct: 507 VACAAK 512

Source: Pisum sativum

Species: Pisum sativum

Genus: Pisum

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	309
TAIR|locus:2050372	507	FVE [Arabidopsis thaliana (tax	0.951	0.579	0.758	4.3e-125
TAIR|locus:2134408	487	NFC5 "AT4G29730" [Arabidopsis	0.948	0.601	0.745	4e-122
TAIR|locus:2131551	424	MSI3 "MULTICOPY SUPPRESSOR OF	0.634	0.462	0.327	5.7e-36
ZFIN|ZDB-GENE-030131-445	444	rbb4 "retinoblastoma binding p	0.679	0.472	0.348	1.2e-35
UNIPROTKB|F2Z4M0	425	RBBP4 "Histone-binding protein	0.640	0.465	0.356	8.1e-35
UNIPROTKB|Q3MHL3	425	RBBP4 "Histone-binding protein	0.640	0.465	0.356	8.1e-35
UNIPROTKB|E2QXR8	425	RBBP4 "Uncharacterized protein	0.640	0.465	0.356	8.1e-35
UNIPROTKB|Q09028	425	RBBP4 "Histone-binding protein	0.640	0.465	0.356	8.1e-35
UNIPROTKB|I3LKT8	390	RBBP4 "Uncharacterized protein	0.640	0.507	0.356	8.1e-35
UNIPROTKB|Q5RF92	425	RBBP4 "Histone-binding protein	0.640	0.465	0.356	8.1e-35

TAIR|locus:2050372 FVE [Arabidopsis thaliana (taxid:3702)]

 Score = 1229 (437.7 bits), Expect = 4.3e-125, P = 4.3e-125
 Identities = 233/307 (75%), Positives = 259/307 (84%)

Query:     3 ILTGHQDNAEFALAMCPTEPYVLSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSII 62
             ILTGHQDNAEFALAMCPTEP+VLSGGKDKSVVLWSIQDHIT+  TD   +KS   SGSII
Sbjct:   214 ILTGHQDNAEFALAMCPTEPFVLSGGKDKSVVLWSIQDHITTIGTD---SKS---SGSII 267

Query:    63 KQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDAR 122
             KQ+   G+G DK  + P+VGPRG+Y+GHEDTVEDV F P+SAQEFCSVGDDSCLILWDAR
Sbjct:   268 KQT---GEGTDKN-ESPTVGPRGVYHGHEDTVEDVAFSPTSAQEFCSVGDDSCLILWDAR 323

Query:   123 VGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFE 182
              GT+PV KVEKAHDADLHCVDWNP DDNLILTGSADN+VR+FDRR LT+NGVGSPI KFE
Sbjct:   324 TGTNPVTKVEKAHDADLHCVDWNPHDDNLILTGSADNTVRLFDRRKLTANGVGSPIYKFE 383

Query:   183 GHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGH 242
             GH AAVLCVQWSPDKSSVFGSSAEDGLLNIWDY++V KK ++  ++   PAGLFFQHAGH
Sbjct:   384 GHKAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYDRVSKKSDRAAKS---PAGLFFQHAGH 440

Query:   243 RDKVVDFHWNASDPWXXXXXXXXXXXXXXXXXLQIWRMSDLIYRPQDEVLAELEKFKAHV 302
             RDKVVDFHWNASDPW                 LQIWRMSDLIYRP++EV+AELEKFK+HV
Sbjct:   441 RDKVVDFHWNASDPWTIVSVSDDCETTGGGGTLQIWRMSDLIYRPEEEVVAELEKFKSHV 500

Query:   303 ISCTSKP 309
             ++C SKP
Sbjct:   501 MTCASKP 507

GO:0005634 "nucleus" evidence=ISM;IDA

GO:0009826 "unidimensional cell growth" evidence=IMP

GO:0009908 "flower development" evidence=IMP

GO:0009965 "leaf morphogenesis" evidence=IMP

GO:0010090 "trichome morphogenesis" evidence=IMP

GO:0005730 "nucleolus" evidence=IDA

GO:0005737 "cytoplasm" evidence=IDA

GO:0080008 "Cul4-RING ubiquitin ligase complex" evidence=ISS

GO:0005829 "cytosol" evidence=IDA

GO:0006281 "DNA repair" evidence=IMP

GO:0010224 "response to UV-B" evidence=IEP

GO:0046872 "metal ion binding" evidence=IDA

TAIR|locus:2134408 NFC5 "AT4G29730" [Arabidopsis thaliana (taxid:3702)]

 Score = 1201 (427.8 bits), Expect = 4.0e-122, P = 4.0e-122
 Identities = 228/306 (74%), Positives = 253/306 (82%)

Query:     3 ILTGHQDNAEFALAMCPTEPYVLSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSII 62
             +L GHQD+AEFALAMCPTEP+VLSGGKDKSV+LW+IQDHIT + +D   +KS GSS    
Sbjct:   194 LLIGHQDDAEFALAMCPTEPFVLSGGKDKSVILWNIQDHITMAGSD---SKSPGSS---F 247

Query:    63 KQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDAR 122
             KQ+   G+G+DK   GPSVGPRGIYNGH+DTVEDV FCPSSAQEFCSVGDDSCL+LWDAR
Sbjct:   248 KQT---GEGSDKTG-GPSVGPRGIYNGHKDTVEDVAFCPSSAQEFCSVGDDSCLMLWDAR 303

Query:   123 VGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFE 182
              GTSP +KVEKAHDADLHCVDWNP D+NLILTGSADN+VR+FDRRNLTSNGVGSP+ KFE
Sbjct:   304 TGTSPAMKVEKAHDADLHCVDWNPHDNNLILTGSADNTVRVFDRRNLTSNGVGSPVYKFE 363

Query:   183 GHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGH 242
             GH AAVLCVQWSPDKSSVFGSSAEDGLLNIWD ++VGKK E   R T  P GLFFQHAGH
Sbjct:   364 GHRAAVLCVQWSPDKSSVFGSSAEDGLLNIWDCDRVGKKSE---RATKTPDGLFFQHAGH 420

Query:   243 RDKVVDFHWNASDPWXXXXXXXXXXXXXXXXXLQIWRMSDLIYRPQDEVLAELEKFKAHV 302
             RDKVVDFHW+  +PW                 LQIWRMSDLIYRP+DEVL ELEKFK+HV
Sbjct:   421 RDKVVDFHWSLLNPWTIVSVSDNCESIGGGGTLQIWRMSDLIYRPEDEVLTELEKFKSHV 480

Query:   303 ISCTSK 308
              +CTSK
Sbjct:   481 FTCTSK 486

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0080008 "Cul4-RING ubiquitin ligase complex" evidence=ISS

TAIR|locus:2131551 MSI3 "MULTICOPY SUPPRESSOR OF IRA1 3" [Arabidopsis thaliana (taxid:3702)]

 Score = 337 (123.7 bits), Expect = 5.7e-36, Sum P(2) = 5.7e-36
 Identities = 69/211 (32%), Positives = 112/211 (53%)

Query:    81 VGPRGIYNGHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLH 140
             + P  +Y GH+  +EDV +   +   F S GDD  L++WD R  T+ +    K H+ +++
Sbjct:   208 LNPMHVYEGHQSIIEDVAWHMKNENIFGSAGDDCQLVIWDLR--TNQMQHQVKVHEREIN 265

Query:   141 CVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWSPDKSSV 200
              + +NP ++ ++ T S+D++V +FD R LT+     P++    H   V  V+W P+  +V
Sbjct:   266 YLSFNPFNEWVLATASSDSTVALFDLRKLTA-----PLHVLSKHEGEVFQVEWDPNHETV 320

Query:   201 FGSSAEDGLLNIWDYEKVG-KKVEQGPRTTNYPAGLFFQHAGHRDKVVDFHWNASDPWXX 259
               SS ED  L +WD  +VG +++E      + P  L F H GH+ K+ DF WN  +PW  
Sbjct:   321 LASSGEDRRLMVWDINRVGDEQLEIELDAEDGPPELLFSHGGHKAKISDFAWNKDEPWVI 380

Query:   260 XXXXXXXXXXXXXXXLQIWRMSDLIYRPQDE 290
                            LQ+W+M++ IYR  DE
Sbjct:   381 SSVAEDNS-------LQVWQMAESIYREDDE 404

GO:0005634 "nucleus" evidence=ISM

GO:0005515 "protein binding" evidence=IPI

GO:0080008 "Cul4-RING ubiquitin ligase complex" evidence=IPI

GO:0000278 "mitotic cell cycle" evidence=RCA

GO:0006396 "RNA processing" evidence=RCA

GO:0006406 "mRNA export from nucleus" evidence=RCA

GO:0006606 "protein import into nucleus" evidence=RCA

GO:0009560 "embryo sac egg cell differentiation" evidence=RCA

GO:0009640 "photomorphogenesis" evidence=RCA

GO:0009793 "embryo development ending in seed dormancy" evidence=RCA

GO:0009845 "seed germination" evidence=RCA

GO:0009909 "regulation of flower development" evidence=RCA

GO:0009933 "meristem structural organization" evidence=RCA

GO:0010074 "maintenance of meristem identity" evidence=RCA

GO:0010162 "seed dormancy process" evidence=RCA

GO:0010182 "sugar mediated signaling pathway" evidence=RCA

GO:0010228 "vegetative to reproductive phase transition of meristem" evidence=RCA

GO:0016567 "protein ubiquitination" evidence=RCA

GO:0019915 "lipid storage" evidence=RCA

GO:0050826 "response to freezing" evidence=RCA

ZFIN|ZDB-GENE-030131-445 rbb4 "retinoblastoma binding protein 4" [Danio rerio (taxid:7955)]

 Score = 356 (130.4 bits), Expect = 1.2e-35, Sum P(2) = 1.2e-35
 Identities = 79/227 (34%), Positives = 118/227 (51%)

Query:    77 DGPSVGPRGIYNGHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVG-TSPVIKVEKAH 135
             +G  V  + I+ GH   VEDV++       F SV DD  L++WD R   TS       AH
Sbjct:   213 EGKIVDAKTIFTGHTAVVEDVSWHLLHESLFGSVADDQKLMIWDTRSNNTSKPSHAVDAH 272

Query:   136 DADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWSP 195
              A+++C+ +NP  + ++ TGSAD +V ++D RNL        ++ FE H   +  VQWSP
Sbjct:   273 TAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLK-----LHSFESHKDEIFQVQWSP 327

Query:   196 DKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTT-NYPAGLFFQHAGHRDKVVDFHWNAS 254
                ++  SS  D  LN+WD  K+G+  EQ P    + P  L F H GH  K+ DF WN +
Sbjct:   328 HNETILASSGTDRRLNVWDLSKIGE--EQSPEDAEDGPPELLFIHGGHTAKISDFSWNPN 385

Query:   255 DPWXXXXXXXXXXXXXXXXXLQIWRMSDLIYRPQD-EVLAELEKFKA 300
             +PW                 +Q+W+M++ IY  +D E  A+ EK+ +
Sbjct:   386 EPWVICSVSEDNI-------MQVWQMAENIYNDEDPEGAADTEKYNS 425

GO:0033186 "CAF-1 complex" evidence=ISS

GO:0031497 "chromatin assembly" evidence=ISS

GO:0008094 "DNA-dependent ATPase activity" evidence=ISS

GO:0005634 "nucleus" evidence=IEA;ISS

GO:0006338 "chromatin remodeling" evidence=ISS

GO:0035098 "ESC/E(Z) complex" evidence=ISS

GO:0006260 "DNA replication" evidence=IEA

GO:0007049 "cell cycle" evidence=IEA

GO:0016568 "chromatin modification" evidence=IEA

GO:0006351 "transcription, DNA-dependent" evidence=IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

UNIPROTKB|F2Z4M0 RBBP4 "Histone-binding protein RBBP4" [Gallus gallus (taxid:9031)]

 Score = 344 (126.2 bits), Expect = 8.1e-35, Sum P(2) = 8.1e-35
 Identities = 77/216 (35%), Positives = 114/216 (52%)

Query:    77 DGPSVGPRGIYNGHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVG-TS-PVIKVEKA 134
             +G  V  + I+ GH   VEDV++       F SV DD  L++WD R   TS P   V+ A
Sbjct:   213 EGKVVDAKTIFTGHTAVVEDVSWHLLHESLFGSVADDQKLMIWDTRSNNTSKPSHSVD-A 271

Query:   135 HDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWS 194
             H A+++C+ +NP  + ++ TGSAD +V ++D RNL        ++ FE H   +  VQWS
Sbjct:   272 HTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLK-----LHSFESHKDEIFQVQWS 326

Query:   195 PDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTT-NYPAGLFFQHAGHRDKVVDFHWNA 253
             P   ++  SS  D  LN+WD  K+G+  EQ P    + P  L F H GH  K+ DF WN 
Sbjct:   327 PHNETILASSGTDRRLNVWDLSKIGE--EQSPEDAEDGPPELLFIHGGHTAKISDFSWNP 384

Query:   254 SDPWXXXXXXXXXXXXXXXXXLQIWRMSDLIYRPQD 289
             ++PW                 +Q+W+M++ IY  +D
Sbjct:   385 NEPWVICSVSEDNI-------MQVWQMAENIYNDED 413

GO:0006338 "chromatin remodeling" evidence=IEA

GO:0008094 "DNA-dependent ATPase activity" evidence=IEA

GO:0016581 "NuRD complex" evidence=IEA

GO:0016589 "NURF complex" evidence=IEA

GO:0031497 "chromatin assembly" evidence=IEA

GO:0033186 "CAF-1 complex" evidence=IEA

GO:0035098 "ESC/E(Z) complex" evidence=IEA

GO:0042826 "histone deacetylase binding" evidence=IEA

UNIPROTKB|Q3MHL3 RBBP4 "Histone-binding protein RBBP4" [Bos taurus (taxid:9913)]

 Score = 344 (126.2 bits), Expect = 8.1e-35, Sum P(2) = 8.1e-35
 Identities = 77/216 (35%), Positives = 114/216 (52%)

Query:    77 DGPSVGPRGIYNGHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVG-TS-PVIKVEKA 134
             +G  V  + I+ GH   VEDV++       F SV DD  L++WD R   TS P   V+ A
Sbjct:   213 EGKVVDAKTIFTGHTAVVEDVSWHLLHESLFGSVADDQKLMIWDTRSNNTSKPSHSVD-A 271

Query:   135 HDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWS 194
             H A+++C+ +NP  + ++ TGSAD +V ++D RNL        ++ FE H   +  VQWS
Sbjct:   272 HTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLK-----LHSFESHKDEIFQVQWS 326

Query:   195 PDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTT-NYPAGLFFQHAGHRDKVVDFHWNA 253
             P   ++  SS  D  LN+WD  K+G+  EQ P    + P  L F H GH  K+ DF WN 
Sbjct:   327 PHNETILASSGTDRRLNVWDLSKIGE--EQSPEDAEDGPPELLFIHGGHTAKISDFSWNP 384

Query:   254 SDPWXXXXXXXXXXXXXXXXXLQIWRMSDLIYRPQD 289
             ++PW                 +Q+W+M++ IY  +D
Sbjct:   385 NEPWVICSVSEDNI-------MQVWQMAENIYNDED 413

GO:0031497 "chromatin assembly" evidence=ISS

GO:0033186 "CAF-1 complex" evidence=ISS

GO:0035098 "ESC/E(Z) complex" evidence=ISS

GO:0042826 "histone deacetylase binding" evidence=IEA

GO:0016589 "NURF complex" evidence=IEA

GO:0016581 "NuRD complex" evidence=IEA

GO:0008094 "DNA-dependent ATPase activity" evidence=IEA

GO:0006338 "chromatin remodeling" evidence=IEA

GO:0007049 "cell cycle" evidence=IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0006351 "transcription, DNA-dependent" evidence=IEA

GO:0006260 "DNA replication" evidence=IEA

UNIPROTKB|E2QXR8 RBBP4 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 344 (126.2 bits), Expect = 8.1e-35, Sum P(2) = 8.1e-35
 Identities = 77/216 (35%), Positives = 114/216 (52%)

Query:    77 DGPSVGPRGIYNGHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVG-TS-PVIKVEKA 134
             +G  V  + I+ GH   VEDV++       F SV DD  L++WD R   TS P   V+ A
Sbjct:   213 EGKVVDAKTIFTGHTAVVEDVSWHLLHESLFGSVADDQKLMIWDTRSNNTSKPSHSVD-A 271

Query:   135 HDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWS 194
             H A+++C+ +NP  + ++ TGSAD +V ++D RNL        ++ FE H   +  VQWS
Sbjct:   272 HTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLK-----LHSFESHKDEIFQVQWS 326

Query:   195 PDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTT-NYPAGLFFQHAGHRDKVVDFHWNA 253
             P   ++  SS  D  LN+WD  K+G+  EQ P    + P  L F H GH  K+ DF WN 
Sbjct:   327 PHNETILASSGTDRRLNVWDLSKIGE--EQSPEDAEDGPPELLFIHGGHTAKISDFSWNP 384

Query:   254 SDPWXXXXXXXXXXXXXXXXXLQIWRMSDLIYRPQD 289
             ++PW                 +Q+W+M++ IY  +D
Sbjct:   385 NEPWVICSVSEDNI-------MQVWQMAENIYNDED 413

GO:0042826 "histone deacetylase binding" evidence=IEA

GO:0035098 "ESC/E(Z) complex" evidence=IEA

GO:0033186 "CAF-1 complex" evidence=IEA

GO:0031497 "chromatin assembly" evidence=IEA

GO:0016589 "NURF complex" evidence=IEA

GO:0016581 "NuRD complex" evidence=IEA

GO:0008094 "DNA-dependent ATPase activity" evidence=IEA

GO:0006338 "chromatin remodeling" evidence=IEA

UNIPROTKB|Q09028 RBBP4 "Histone-binding protein RBBP4" [Homo sapiens (taxid:9606)]

 Score = 344 (126.2 bits), Expect = 8.1e-35, Sum P(2) = 8.1e-35
 Identities = 77/216 (35%), Positives = 114/216 (52%)

Query:    77 DGPSVGPRGIYNGHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVG-TS-PVIKVEKA 134
             +G  V  + I+ GH   VEDV++       F SV DD  L++WD R   TS P   V+ A
Sbjct:   213 EGKVVDAKTIFTGHTAVVEDVSWHLLHESLFGSVADDQKLMIWDTRSNNTSKPSHSVD-A 271

Query:   135 HDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWS 194
             H A+++C+ +NP  + ++ TGSAD +V ++D RNL        ++ FE H   +  VQWS
Sbjct:   272 HTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLK-----LHSFESHKDEIFQVQWS 326

Query:   195 PDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTT-NYPAGLFFQHAGHRDKVVDFHWNA 253
             P   ++  SS  D  LN+WD  K+G+  EQ P    + P  L F H GH  K+ DF WN 
Sbjct:   327 PHNETILASSGTDRRLNVWDLSKIGE--EQSPEDAEDGPPELLFIHGGHTAKISDFSWNP 384

Query:   254 SDPWXXXXXXXXXXXXXXXXXLQIWRMSDLIYRPQD 289
             ++PW                 +Q+W+M++ IY  +D
Sbjct:   385 NEPWVICSVSEDNI-------MQVWQMAENIYNDED 413

GO:0006260 "DNA replication" evidence=IEA

GO:0006351 "transcription, DNA-dependent" evidence=IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0005515 "protein binding" evidence=IPI

GO:0016581 "NuRD complex" evidence=NAS;IDA

GO:0016589 "NURF complex" evidence=IDA

GO:0035098 "ESC/E(Z) complex" evidence=IDA

GO:0033186 "CAF-1 complex" evidence=IDA

GO:0031497 "chromatin assembly" evidence=IDA

GO:0008285 "negative regulation of cell proliferation" evidence=TAS

GO:0005634 "nucleus" evidence=IDA

GO:0006338 "chromatin remodeling" evidence=IDA

GO:0008094 "DNA-dependent ATPase activity" evidence=IDA

GO:0000278 "mitotic cell cycle" evidence=TAS

GO:0005654 "nucleoplasm" evidence=TAS

GO:0006334 "nucleosome assembly" evidence=TAS

GO:0034080 "CENP-A containing nucleosome assembly at centromere" evidence=TAS

GO:0016580 "Sin3 complex" evidence=NAS

GO:0042393 "histone binding" evidence=NAS

GO:0042826 "histone deacetylase binding" evidence=IPI

UNIPROTKB|I3LKT8 RBBP4 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 344 (126.2 bits), Expect = 8.1e-35, Sum P(2) = 8.1e-35
 Identities = 77/216 (35%), Positives = 114/216 (52%)

Query:    77 DGPSVGPRGIYNGHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVG-TS-PVIKVEKA 134
             +G  V  + I+ GH   VEDV++       F SV DD  L++WD R   TS P   V+ A
Sbjct:   178 EGKVVDAKTIFTGHTAVVEDVSWHLLHESLFGSVADDQKLMIWDTRSNNTSKPSHSVD-A 236

Query:   135 HDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWS 194
             H A+++C+ +NP  + ++ TGSAD +V ++D RNL        ++ FE H   +  VQWS
Sbjct:   237 HTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLK-----LHSFESHKDEIFQVQWS 291

Query:   195 PDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTT-NYPAGLFFQHAGHRDKVVDFHWNA 253
             P   ++  SS  D  LN+WD  K+G+  EQ P    + P  L F H GH  K+ DF WN 
Sbjct:   292 PHNETILASSGTDRRLNVWDLSKIGE--EQSPEDAEDGPPELLFIHGGHTAKISDFSWNP 349

Query:   254 SDPWXXXXXXXXXXXXXXXXXLQIWRMSDLIYRPQD 289
             ++PW                 +Q+W+M++ IY  +D
Sbjct:   350 NEPWVICSVSEDNI-------MQVWQMAENIYNDED 378

GO:0042826 "histone deacetylase binding" evidence=IEA

GO:0035098 "ESC/E(Z) complex" evidence=IEA

GO:0033186 "CAF-1 complex" evidence=IEA

GO:0031497 "chromatin assembly" evidence=IEA

GO:0016589 "NURF complex" evidence=IEA

GO:0016581 "NuRD complex" evidence=IEA

GO:0008094 "DNA-dependent ATPase activity" evidence=IEA

GO:0006338 "chromatin remodeling" evidence=IEA

UNIPROTKB|Q5RF92 RBBP4 "Histone-binding protein RBBP4" [Pongo abelii (taxid:9601)]

 Score = 344 (126.2 bits), Expect = 8.1e-35, Sum P(2) = 8.1e-35
 Identities = 77/216 (35%), Positives = 114/216 (52%)

Query:    77 DGPSVGPRGIYNGHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVG-TS-PVIKVEKA 134
             +G  V  + I+ GH   VEDV++       F SV DD  L++WD R   TS P   V+ A
Sbjct:   213 EGKVVDAKTIFTGHTAVVEDVSWHLLHESLFGSVADDQKLMIWDTRSNNTSKPSHSVD-A 271

Query:   135 HDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWS 194
             H A+++C+ +NP  + ++ TGSAD +V ++D RNL        ++ FE H   +  VQWS
Sbjct:   272 HTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLK-----LHSFESHKDEIFQVQWS 326

Query:   195 PDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTT-NYPAGLFFQHAGHRDKVVDFHWNA 253
             P   ++  SS  D  LN+WD  K+G+  EQ P    + P  L F H GH  K+ DF WN 
Sbjct:   327 PHNETILASSGTDRRLNVWDLSKIGE--EQSPEDAEDGPPELLFIHGGHTAKISDFSWNP 384

Query:   254 SDPWXXXXXXXXXXXXXXXXXLQIWRMSDLIYRPQD 289
             ++PW                 +Q+W+M++ IY  +D
Sbjct:   385 NEPWVICSVSEDNI-------MQVWQMAENIYNDED 413

GO:0031497 "chromatin assembly" evidence=ISS

GO:0033186 "CAF-1 complex" evidence=ISS

GO:0035098 "ESC/E(Z) complex" evidence=ISS

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
O22607	MSI4_ARATH	No assigned EC number	0.8045	0.9514	0.5798	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: NFC905 nucleosome/chromatin assembly factor group (502 aa) (Populus trichocarpa)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	309
cd00200	289	cd00200, WD40, WD40 domain, found in a number of e	5e-24
cd00200	289	cd00200, WD40, WD40 domain, found in a number of e	1e-20
COG2319	466	COG2319, COG2319, FOG: WD40 repeat [General functi	4e-17
cd00200	289	cd00200, WD40, WD40 domain, found in a number of e	3e-15
COG2319	466	COG2319, COG2319, FOG: WD40 repeat [General functi	7e-14
COG2319	466	COG2319, COG2319, FOG: WD40 repeat [General functi	1e-10
cd00200	289	cd00200, WD40, WD40 domain, found in a number of e	9e-07
PTZ00421	493	PTZ00421, PTZ00421, coronin; Provisional	1e-06
pfam00400	39	pfam00400, WD40, WD domain, G-beta repeat	7e-06
PTZ00420	568	PTZ00420, PTZ00420, coronin; Provisional	8e-06
smart00320	40	smart00320, WD40, WD40 repeats	1e-05
PTZ00421	493	PTZ00421, PTZ00421, coronin; Provisional	6e-05
COG2319	466	COG2319, COG2319, FOG: WD40 repeat [General functi	7e-05
pfam00400	39	pfam00400, WD40, WD domain, G-beta repeat	2e-04
smart00320	40	smart00320, WD40, WD40 repeats	2e-04
PLN00181	793	PLN00181, PLN00181, protein SPA1-RELATED; Provisio	0.002

>gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment

 Score = 98.6 bits (246), Expect = 5e-24
 Identities = 55/216 (25%), Positives = 93/216 (43%), Gaps = 18/216 (8%)

Query: 3   ILTGHQDNAEFALAMCPTEPYVLSGGKDKSVVLWSIQD----HITSSATDPATAKSAGSS 58
            LTGH      ++A  P    + S  +DK++ +W ++           TD   + +    
Sbjct: 88  TLTGHTS-YVSSVAFSPDGRILSSSSRDKTIKVWDVETGKCLTTLRGHTDWVNSVAFSPD 146

Query: 59  GSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQEFCSVGDDSCLIL 118
           G+ +  S +  DG  K  D  +        GH   V  V F P   ++  S   D  + L
Sbjct: 147 GTFVASSSQ--DGTIKLWDLRTGKCVATLTGHTGEVNSVAFSPDG-EKLLSSSSDGTIKL 203

Query: 119 WDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPI 178
           WD   G    +   + H+  ++ V ++P D  L+ +GS D ++R++D R       G  +
Sbjct: 204 WDLSTGK--CLGTLRGHENGVNSVAFSP-DGYLLASGSEDGTIRVWDLRT------GECV 254

Query: 179 NKFEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWD 214
               GH+ +V  + WSPD   +  S + DG + IWD
Sbjct: 255 QTLSGHTNSVTSLAWSPDGKRLA-SGSADGTIRIWD 289

Length = 289

>gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment

 Score = 89.3 bits (222), Expect = 1e-20
 Identities = 60/284 (21%), Positives = 108/284 (38%), Gaps = 47/284 (16%)

Query: 4   LTGHQDNAEFALAMCPTEPYVLSGGKDKSVVLWSIQD----HITSSATDPATAKSAGSSG 59
           L GH       +A  P    + +G  D ++ +W ++           T P    +A + G
Sbjct: 5   LKGHTGGV-TCVAFSPDGKLLATGSGDGTIKVWDLETGELLRTLKGHTGPVRDVAASADG 63

Query: 60  SIIKQSPKPGDGNDKAA---DGPSVGPRGIYNGHEDTVEDVTFCPSSAQEFCSVGDDSCL 116
           + +         +DK     D  +        GH   V  V F P   +   S   D  +
Sbjct: 64  TYLASG-----SSDKTIRLWDLETGECVRTLTGHTSYVSSVAFSPDG-RILSSSSRDKTI 117

Query: 117 ILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGS 176
            +WD   G    +   + H   ++ V ++P D   + + S D +++++D R       G 
Sbjct: 118 KVWDVETGKC--LTTLRGHTDWVNSVAFSP-DGTFVASSSQDGTIKLWDLRT------GK 168

Query: 177 PINKFEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLF 236
            +    GH+  V  V +SPD   +  SS+ DG + +WD    GK +              
Sbjct: 169 CVATLTGHTGEVNSVAFSPDGEKLL-SSSSDGTIKLWDLST-GKCLGTLR---------- 216

Query: 237 FQHAGHRDKVVDFHWNASDPWTVVSVSDDCDSTGGGGTLQIWRM 280
               GH + V    ++  D + + S S+D       GT+++W +
Sbjct: 217 ----GHENGVNSVAFS-PDGYLLASGSED-------GTIRVWDL 248

Length = 289

>gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only]

 Score = 81.3 bits (199), Expect = 4e-17
 Identities = 61/264 (23%), Positives = 99/264 (37%), Gaps = 35/264 (13%)

Query: 23  YVLSGGKDKSVVLWSIQDHITSSAT-----DPATAKSAGSSGSIIKQSPKPGDGNDKAAD 77
            + S   D +V LW +        T     +  T+ +    G ++  S    DG  K  D
Sbjct: 126 LLASSSLDGTVKLWDLSTPGKLIRTLEGHSESVTSLAFSPDGKLLA-SGSSLDGTIKLWD 184

Query: 78  GPSVGPRGIYNGHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPVIKVEKAHDA 137
             +  P     GH D V  + F P       S   D  + LWD   G      +    D+
Sbjct: 185 LRTGKPLSTLAGHTDPVSSLAFSPDGGLLIASGSSDGTIRLWDLSTGKLLRSTLSGHSDS 244

Query: 138 DLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWSPDK 197
            +        D +L+ +GS+D ++R++D R+       S +    GHS++VL V +SPD 
Sbjct: 245 VVSSFSP---DGSLLASGSSDGTIRLWDLRSS-----SSLLRTLSGHSSSVLSVAFSPDG 296

Query: 198 SSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKVVDFHWNASDPW 257
             +  S + DG + +WD E          +             GH   V    ++     
Sbjct: 297 KLLA-SGSSDGTVRLWDLETGKLLSSLTLK-------------GHEGPVSSLSFSPDGSL 342

Query: 258 TVVSVSDDCDSTGGGGTLQIWRMS 281
            V   SDD       GT+++W + 
Sbjct: 343 LVSGGSDD-------GTIRLWDLR 359

Length = 466

>gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment

 Score = 73.9 bits (182), Expect = 3e-15
 Identities = 49/199 (24%), Positives = 78/199 (39%), Gaps = 34/199 (17%)

Query: 83  PRGIYNGHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCV 142
            R    GH   V  V F P   +   +   D  + +WD   G   +++  K H   +  V
Sbjct: 1   LRRTLKGHTGGVTCVAFSPDG-KLLATGSGDGTIKVWDLETGE--LLRTLKGHTGPVRDV 57

Query: 143 DWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWSPDKSSVFG 202
             +  D   + +GS+D ++R++D         G  +    GH++ V  V +SPD   +  
Sbjct: 58  AASA-DGTYLASGSSDKTIRLWDLET------GECVRTLTGHTSYVSSVAFSPDGRILSS 110

Query: 203 SSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKVVDFHWNASDPWTVVSV 262
           SS  D  + +WD       VE G   T           GH D V    ++  D   V S 
Sbjct: 111 SSR-DKTIKVWD-------VETGKCLTTLR--------GHTDWVNSVAFS-PDGTFVASS 153

Query: 263 SDDCDSTGGGGTLQIWRMS 281
           S D       GT+++W + 
Sbjct: 154 SQD-------GTIKLWDLR 165

Length = 289

>gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only]

 Score = 71.3 bits (173), Expect = 7e-14
 Identities = 51/201 (25%), Positives = 84/201 (41%), Gaps = 30/201 (14%)

Query: 84  RGIYNGHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVD 143
             +  GHED++  + F P   +   S   D  + LWD   G   +  +E  HD+ +  + 
Sbjct: 58  SLLLRGHEDSITSIAFSPDG-ELLLSGSSDGTIKLWDLDNGEKLIKSLEGLHDSSVSKLA 116

Query: 144 WNPLDDNLILT--GSADNSVRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWSPDKSSVF 201
            +  D N IL    S D +V+++D      +  G  I   EGHS +V  + +SPD   + 
Sbjct: 117 LSSPDGNSILLASSSLDGTVKLWD-----LSTPGKLIRTLEGHSESVTSLAFSPDGKLLA 171

Query: 202 GSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKVVDFHWNASDPWTVVS 261
             S+ DG + +WD       +  G   +          AGH D V    ++      + S
Sbjct: 172 SGSSLDGTIKLWD-------LRTGKPLSTL--------AGHTDPVSSLAFSPDGGLLIAS 216

Query: 262 VSDDCDSTGGGGTLQIWRMSD 282
            S D       GT+++W +S 
Sbjct: 217 GSSD-------GTIRLWDLST 230

Length = 466

>gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only]

 Score = 61.3 bits (147), Expect = 1e-10
 Identities = 49/201 (24%), Positives = 75/201 (37%), Gaps = 32/201 (15%)

Query: 86  IYNGHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWN 145
             +GH  +V  V F P       S   D  + LWD   G        K H+  +  + ++
Sbjct: 279 TLSGHSSSVLSVAFSPDGKLLA-SGSSDGTVRLWDLETGKLLSSLTLKGHEGPVSSLSFS 337

Query: 146 PLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSA 205
           P    L+  GS D ++R++D R       G P+   EGHS  VL V +SPD   V  S +
Sbjct: 338 PDGSLLVSGGSDDGTIRLWDLRT------GKPLKTLEGHS-NVLSVSFSPDG-RVVSSGS 389

Query: 206 EDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKVVDFHWNASDPWTVVSVSDD 265
            DG + +WD                            R   +DF     D  ++ S S D
Sbjct: 390 TDGTVRLWDLSTGSLLR-------------NLDGHTSRVTSLDFS---PDGKSLASGSSD 433

Query: 266 CDSTGGGGTLQIWRMSDLIYR 286
                   T+++W +   +  
Sbjct: 434 -------NTIRLWDLKTSLKS 447

Length = 466

>gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment

 Score = 49.3 bits (118), Expect = 9e-07
 Identities = 29/129 (22%), Positives = 47/129 (36%), Gaps = 30/129 (23%)

Query: 181 FEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHA 240
            +GH+  V CV +SPD   +  + + DG + +WD E            T           
Sbjct: 5   LKGHTGGVTCVAFSPD-GKLLATGSGDGTIKVWDLE------TGELLRTLK--------- 48

Query: 241 GHRDKVVDFHWNASDPWTVVSVSDDCDSTGGGGTLQIWRMSDLIYRPQDEVLAELEKFKA 300
           GH   V D   +A   + + S S D        T+++W +         E +  L    +
Sbjct: 49  GHTGPVRDVAASADGTY-LASGSSD-------KTIRLWDLET------GECVRTLTGHTS 94

Query: 301 HVISCTSKP 309
           +V S    P
Sbjct: 95  YVSSVAFSP 103

Length = 289

>gnl|CDD|173611 PTZ00421, PTZ00421, coronin; Provisional

 Score = 49.1 bits (117), Expect = 1e-06
 Identities = 41/152 (26%), Positives = 63/152 (41%), Gaps = 15/152 (9%)

Query: 142 VDWNPLDDNLILTGSADNSVRMFD--RRNLTSNGVGSPINKFEGHSAAVLCVQWSPDKSS 199
           V +NP D   + T S D ++  +      LT N +  PI   +GH+  V  V + P   +
Sbjct: 81  VAFNPFDPQKLFTASEDGTIMGWGIPEEGLTQN-ISDPIVHLQGHTKKVGIVSFHPSAMN 139

Query: 200 VFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAG------HRDKVVDFHWNA 253
           V  S+  D ++N+WD E+ GK VE     ++    L +   G       +DK +    N 
Sbjct: 140 VLASAGADMVVNVWDVER-GKAVEVIKCHSDQITSLEWNLDGSLLCTTSKDKKL----NI 194

Query: 254 SDPWTVVSVSDDCDSTGGGGTLQIW-RMSDLI 284
            DP     VS             +W +  DLI
Sbjct: 195 IDPRDGTIVSSVEAHASAKSQRCLWAKRKDLI 226

Length = 493

>gnl|CDD|201208 pfam00400, WD40, WD domain, G-beta repeat

 Score = 42.0 bits (99), Expect = 7e-06
 Identities = 13/40 (32%), Positives = 23/40 (57%), Gaps = 1/40 (2%)

Query: 175 GSPINKFEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWD 214
           G  +   +GH+  V  V +SPD  ++  S ++DG + +WD
Sbjct: 1   GKLLRTLKGHTGPVTSVAFSPD-GNLLASGSDDGTVRVWD 39

Length = 39

>gnl|CDD|240412 PTZ00420, PTZ00420, coronin; Provisional

 Score = 46.9 bits (111), Expect = 8e-06
 Identities = 25/92 (27%), Positives = 47/92 (51%), Gaps = 3/92 (3%)

Query: 127 PVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRR--NLTSNGVGSPINKFEGH 184
           PVIK+ K H + +  + +NP    ++ +GS D ++R+++    + +   +  P    +GH
Sbjct: 66  PVIKL-KGHTSSILDLQFNPCFSEILASGSEDLTIRVWEIPHNDESVKEIKDPQCILKGH 124

Query: 185 SAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYE 216
              +  + W+P    +  SS  D  +NIWD E
Sbjct: 125 KKKISIIDWNPMNYYIMCSSGFDSFVNIWDIE 156

Length = 568

>gnl|CDD|197651 smart00320, WD40, WD40 repeats

 Score = 41.5 bits (98), Expect = 1e-05
 Identities = 13/40 (32%), Positives = 21/40 (52%), Gaps = 1/40 (2%)

Query: 175 GSPINKFEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWD 214
           G  +   +GH+  V  V +SPD      S ++DG + +WD
Sbjct: 2   GELLKTLKGHTGPVTSVAFSPD-GKYLASGSDDGTIKLWD 40

Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain. Length = 40

>gnl|CDD|173611 PTZ00421, PTZ00421, coronin; Provisional

 Score = 44.1 bits (104), Expect = 6e-05
 Identities = 27/82 (32%), Positives = 42/82 (51%), Gaps = 3/82 (3%)

Query: 89  GHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLD 148
           GH   V  V+F PS+     S G D  + +WD   G +  ++V K H   +  ++WN LD
Sbjct: 123 GHTKKVGIVSFHPSAMNVLASAGADMVVNVWDVERGKA--VEVIKCHSDQITSLEWN-LD 179

Query: 149 DNLILTGSADNSVRMFDRRNLT 170
            +L+ T S D  + + D R+ T
Sbjct: 180 GSLLCTTSKDKKLNIIDPRDGT 201

Length = 493

>gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only]

 Score = 43.9 bits (102), Expect = 7e-05
 Identities = 43/184 (23%), Positives = 79/184 (42%), Gaps = 11/184 (5%)

Query: 3   ILTGHQDNAEFALAMCPTEPYVLSGGKDKSVVLWSIQDH-----ITSSATDPATAKSAGS 57
            L+GH  +   ++A  P    + SG  D +V LW ++       +T    +   +  + S
Sbjct: 279 TLSGHSSSV-LSVAFSPDGKLLASGSSDGTVRLWDLETGKLLSSLTLKGHEGPVSSLSFS 337

Query: 58  SGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQEFCSVGDDSCLI 117
               +  S    DG  +  D  +  P     GH   V  V+F P   +   S   D  + 
Sbjct: 338 PDGSLLVSGGSDDGTIRLWDLRTGKPLKTLEGH-SNVLSVSFSPDG-RVVSSGSTDGTVR 395

Query: 118 LWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSP 177
           LWD   G+  +++    H + +  +D++P D   + +GS+DN++R++D +    +   SP
Sbjct: 396 LWDLSTGS--LLRNLDGHTSRVTSLDFSP-DGKSLASGSSDNTIRLWDLKTSLKSVSFSP 452

Query: 178 INKF 181
             K 
Sbjct: 453 DGKV 456

Length = 466

>gnl|CDD|201208 pfam00400, WD40, WD domain, G-beta repeat

 Score = 38.1 bits (89), Expect = 2e-04
 Identities = 13/38 (34%), Positives = 24/38 (63%), Gaps = 1/38 (2%)

Query: 128 VIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFD 165
           +++  K H   +  V ++P D NL+ +GS D +VR++D
Sbjct: 3   LLRTLKGHTGPVTSVAFSP-DGNLLASGSDDGTVRVWD 39

Length = 39

>gnl|CDD|197651 smart00320, WD40, WD40 repeats

 Score = 37.7 bits (88), Expect = 2e-04
 Identities = 10/41 (24%), Positives = 23/41 (56%), Gaps = 1/41 (2%)

Query: 125 TSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFD 165
           +  ++K  K H   +  V ++P D   + +GS D +++++D
Sbjct: 1   SGELLKTLKGHTGPVTSVAFSP-DGKYLASGSDDGTIKLWD 40

Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain. Length = 40

>gnl|CDD|177776 PLN00181, PLN00181, protein SPA1-RELATED; Provisional

 Score = 39.3 bits (91), Expect = 0.002
 Identities = 38/138 (27%), Positives = 56/138 (40%), Gaps = 12/138 (8%)

Query: 90  HEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTS-PVIKVEKAHDADLHCVDWNPLD 148
           HE  V  + +  +      S  DD  + LW    G S   IK +    A++ CV +    
Sbjct: 574 HEKRVWSIDYSSADPTLLASGSDDGSVKLWSINQGVSIGTIKTK----ANICCVQFPSES 629

Query: 149 DNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAEDG 208
              +  GSAD+ V  +D RN        P+    GHS  V  V++    SS   SS+ D 
Sbjct: 630 GRSLAFGSADHKVYYYDLRNPK-----LPLCTMIGHSKTVSYVRFV--DSSTLVSSSTDN 682

Query: 209 LLNIWDYEKVGKKVEQGP 226
            L +WD       + + P
Sbjct: 683 TLKLWDLSMSISGINETP 700

Length = 793

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	309
KOG0272	459	consensus U4/U6 small nuclear ribonucleoprotein Pr	100.0
KOG0271	480	consensus Notchless-like WD40 repeat-containing pr	100.0
KOG0271	480	consensus Notchless-like WD40 repeat-containing pr	100.0
KOG0286	343	consensus G-protein beta subunit [General function	100.0
KOG0272	459	consensus U4/U6 small nuclear ribonucleoprotein Pr	100.0
KOG0263	707	consensus Transcription initiation factor TFIID, s	100.0
KOG0279	315	consensus G protein beta subunit-like protein [Sig	100.0
KOG0284	464	consensus Polyadenylation factor I complex, subuni	100.0
KOG0279	315	consensus G protein beta subunit-like protein [Sig	100.0
KOG0263	707	consensus Transcription initiation factor TFIID, s	100.0
KOG0265	338	consensus U5 snRNP-specific protein-like factor an	100.0
KOG0284	464	consensus Polyadenylation factor I complex, subuni	100.0
KOG0295	406	consensus WD40 repeat-containing protein [Function	100.0
KOG0277	311	consensus Peroxisomal targeting signal type 2 rece	100.0
KOG0316	307	consensus Conserved WD40 repeat-containing protein	100.0
KOG0285	460	consensus Pleiotropic regulator 1 [RNA processing	100.0
KOG0264	422	consensus Nucleosome remodeling factor, subunit CA	100.0
KOG0315	311	consensus G-protein beta subunit-like protein (con	100.0
KOG0645	312	consensus WD40 repeat protein [General function pr	100.0
KOG0319	775	consensus WD40-repeat-containing subunit of the 18	100.0
KOG0273	524	consensus Beta-transducin family (WD-40 repeat) pr	100.0
KOG0266	456	consensus WD40 repeat-containing protein [General	100.0
KOG0286	343	consensus G-protein beta subunit [General function	100.0
KOG0282	503	consensus mRNA splicing factor [Function unknown]	100.0
KOG0276	794	consensus Vesicle coat complex COPI, beta' subunit	100.0
KOG0273	524	consensus Beta-transducin family (WD-40 repeat) pr	100.0
KOG0315	311	consensus G-protein beta subunit-like protein (con	100.0
KOG0295	406	consensus WD40 repeat-containing protein [Function	100.0
KOG0266	456	consensus WD40 repeat-containing protein [General	100.0
PTZ00421	493	coronin; Provisional	100.0
cd00200	289	WD40 WD40 domain, found in a number of eukaryotic	100.0
KOG0281	499	consensus Beta-TrCP (transducin repeats containing	100.0
KOG0292	1202	consensus Vesicle coat complex COPI, alpha subunit	100.0
PLN00181	793	protein SPA1-RELATED; Provisional	100.0
KOG0318	603	consensus WD40 repeat stress protein/actin interac	100.0
KOG0277	311	consensus Peroxisomal targeting signal type 2 rece	100.0
KOG0772	641	consensus Uncharacterized conserved protein, conta	100.0
KOG0313	423	consensus Microtubule binding protein YTM1 (contai	100.0
KOG1446	311	consensus Histone H3 (Lys4) methyltransferase comp	100.0
KOG0283	712	consensus WD40 repeat-containing protein [Function	100.0
PTZ00420	568	coronin; Provisional	100.0
KOG0645	312	consensus WD40 repeat protein [General function pr	100.0
KOG0264	422	consensus Nucleosome remodeling factor, subunit CA	100.0
KOG0292	1202	consensus Vesicle coat complex COPI, alpha subunit	100.0
KOG0293	519	consensus WD40 repeat-containing protein [Function	100.0
KOG0318	603	consensus WD40 repeat stress protein/actin interac	100.0
KOG0296	399	consensus Angio-associated migratory cell protein	100.0
KOG1407	313	consensus WD40 repeat protein [Function unknown]	100.0
KOG0310	487	consensus Conserved WD40 repeat-containing protein	100.0
KOG0313	423	consensus Microtubule binding protein YTM1 (contai	100.0
KOG0281	499	consensus Beta-TrCP (transducin repeats containing	100.0
KOG0265	338	consensus U5 snRNP-specific protein-like factor an	100.0
KOG0291	893	consensus WD40-repeat-containing subunit of the 18	100.0
KOG0291	893	consensus WD40-repeat-containing subunit of the 18	100.0
KOG0306	888	consensus WD40-repeat-containing subunit of the 18	100.0
KOG0319	775	consensus WD40-repeat-containing subunit of the 18	100.0
KOG0285	460	consensus Pleiotropic regulator 1 [RNA processing	100.0
KOG0296	399	consensus Angio-associated migratory cell protein	100.0
KOG0282	503	consensus mRNA splicing factor [Function unknown]	100.0
KOG0305	484	consensus Anaphase promoting complex, Cdc20, Cdh1,	100.0
KOG0640	430	consensus mRNA cleavage stimulating factor complex	100.0
KOG0643	327	consensus Translation initiation factor 3, subunit	100.0
KOG0647	347	consensus mRNA export protein (contains WD40 repea	100.0
cd00200	289	WD40 WD40 domain, found in a number of eukaryotic	100.0
KOG0275	508	consensus Conserved WD40 repeat-containing protein	100.0
KOG0302	440	consensus Ribosome Assembly protein [General funct	100.0
KOG1332	299	consensus Vesicle coat complex COPII, subunit SEC1	100.0
KOG0641	350	consensus WD40 repeat protein [General function pr	100.0
KOG0643	327	consensus Translation initiation factor 3, subunit	99.98
PTZ00421	493	coronin; Provisional	99.98
KOG0308	735	consensus Conserved WD40 repeat-containing protein	99.98
KOG0269	839	consensus WD40 repeat-containing protein [Function	99.98
KOG0293	519	consensus WD40 repeat-containing protein [Function	99.98
KOG0278	334	consensus Serine/threonine kinase receptor-associa	99.98
KOG0300	481	consensus WD40 repeat-containing protein [Function	99.97
KOG0274	537	consensus Cdc4 and related F-box and WD-40 protein	99.97
KOG0276	794	consensus Vesicle coat complex COPI, beta' subunit	99.97
KOG0302	440	consensus Ribosome Assembly protein [General funct	99.97
KOG2096	420	consensus WD40 repeat protein [General function pr	99.97
KOG0278	334	consensus Serine/threonine kinase receptor-associa	99.97
KOG0646	476	consensus WD40 repeat protein [General function pr	99.97
KOG4283	397	consensus Transcription-coupled repair protein CSA	99.97
KOG0288	459	consensus WD40 repeat protein TipD [General functi	99.97
KOG0973	942	consensus Histone transcription regulator HIRA, WD	99.97
KOG0306	888	consensus WD40-repeat-containing subunit of the 18	99.97
KOG0300	481	consensus WD40 repeat-containing protein [Function	99.97
KOG0289	506	consensus mRNA splicing factor [General function p	99.97
PLN00181	793	protein SPA1-RELATED; Provisional	99.97
KOG0299	479	consensus U3 snoRNP-associated protein (contains W	99.97
KOG1036	323	consensus Mitotic spindle checkpoint protein BUB3,	99.97
KOG0269	839	consensus WD40 repeat-containing protein [Function	99.97
KOG0274	537	consensus Cdc4 and related F-box and WD-40 protein	99.97
KOG0294	362	consensus WD40 repeat-containing protein [Function	99.97
KOG0268	433	consensus Sof1-like rRNA processing protein (conta	99.97
KOG0641	350	consensus WD40 repeat protein [General function pr	99.97
KOG0973	942	consensus Histone transcription regulator HIRA, WD	99.97
KOG0268	433	consensus Sof1-like rRNA processing protein (conta	99.97
KOG1332	299	consensus Vesicle coat complex COPII, subunit SEC1	99.97
KOG0310	487	consensus Conserved WD40 repeat-containing protein	99.96
PTZ00420	568	coronin; Provisional	99.96
KOG0289	506	consensus mRNA splicing factor [General function p	99.96
KOG0267	825	consensus Microtubule severing protein katanin p80	99.96
KOG1274	933	consensus WD40 repeat protein [General function pr	99.96
KOG0283	712	consensus WD40 repeat-containing protein [Function	99.96
KOG0270	463	consensus WD40 repeat-containing protein [Function	99.96
KOG2445	361	consensus Nuclear pore complex component (sc Seh1)	99.96
KOG0301	745	consensus Phospholipase A2-activating protein (con	99.96
KOG0308	735	consensus Conserved WD40 repeat-containing protein	99.96
KOG0305	484	consensus Anaphase promoting complex, Cdc20, Cdh1,	99.96
KOG1407	313	consensus WD40 repeat protein [Function unknown]	99.96
KOG0316	307	consensus Conserved WD40 repeat-containing protein	99.96
KOG0275	508	consensus Conserved WD40 repeat-containing protein	99.96
KOG0270	463	consensus WD40 repeat-containing protein [Function	99.96
KOG0640	430	consensus mRNA cleavage stimulating factor complex	99.96
KOG0288	459	consensus WD40 repeat protein TipD [General functi	99.95
KOG0772	641	consensus Uncharacterized conserved protein, conta	99.95
KOG0299	479	consensus U3 snoRNP-associated protein (contains W	99.95
KOG1446	311	consensus Histone H3 (Lys4) methyltransferase comp	99.95
KOG0307	1049	consensus Vesicle coat complex COPII, subunit SEC3	99.95
KOG4328	498	consensus WD40 protein [Function unknown]	99.95
KOG0321	720	consensus WD40 repeat-containing protein L2DTL [Fu	99.95
KOG0267	825	consensus Microtubule severing protein katanin p80	99.95
KOG0301	745	consensus Phospholipase A2-activating protein (con	99.95
KOG0650	733	consensus WD40 repeat nucleolar protein Bop1, invo	99.95
KOG0639	705	consensus Transducin-like enhancer of split protei	99.94
KOG1273	405	consensus WD40 repeat protein [General function pr	99.94
KOG2919	406	consensus Guanine nucleotide-binding protein [Gene	99.94
KOG0290	364	consensus Conserved WD40 repeat-containing protein	99.94
KOG2055	514	consensus WD40 repeat protein [General function pr	99.93
KOG1007	370	consensus WD repeat protein TSSC1, WD repeat super	99.93
KOG1007	370	consensus WD repeat protein TSSC1, WD repeat super	99.93
KOG4378	673	consensus Nuclear protein COP1 [Signal transductio	99.93
KOG0307	1049	consensus Vesicle coat complex COPII, subunit SEC3	99.93
TIGR03866	300	PQQ_ABC_repeats PQQ-dependent catabolism-associate	99.93
KOG0646	476	consensus WD40 repeat protein [General function pr	99.93
KOG2445	361	consensus Nuclear pore complex component (sc Seh1)	99.93
KOG0303	472	consensus Actin-binding protein Coronin, contains	99.92
KOG1408	1080	consensus WD40 repeat protein [Function unknown]	99.92
KOG1063	764	consensus RNA polymerase II elongator complex, sub	99.92
KOG0639	705	consensus Transducin-like enhancer of split protei	99.92
KOG2048	691	consensus WD40 repeat protein [General function pr	99.92
KOG0290	364	consensus Conserved WD40 repeat-containing protein	99.92
KOG1408	1080	consensus WD40 repeat protein [Function unknown]	99.92
KOG0647	347	consensus mRNA export protein (contains WD40 repea	99.92
KOG0642	577	consensus Cell-cycle nuclear protein, contains WD-	99.92
KOG0294	362	consensus WD40 repeat-containing protein [Function	99.92
KOG2106	626	consensus Uncharacterized conserved protein, conta	99.91
KOG2106	626	consensus Uncharacterized conserved protein, conta	99.91
KOG2055	514	consensus WD40 repeat protein [General function pr	99.91
KOG1310	758	consensus WD40 repeat protein [General function pr	99.91
KOG4283	397	consensus Transcription-coupled repair protein CSA	99.91
KOG1539	910	consensus WD repeat protein [General function pred	99.9
KOG4227	609	consensus WD40 repeat protein [General function pr	99.9
KOG4328	498	consensus WD40 protein [Function unknown]	99.9
KOG1445	1012	consensus Tumor-specific antigen (contains WD repe	99.9
KOG1009	434	consensus Chromatin assembly complex 1 subunit B/C	99.9
KOG2096	420	consensus WD40 repeat protein [General function pr	99.89
KOG0321	720	consensus WD40 repeat-containing protein L2DTL [Fu	99.89
KOG1539	910	consensus WD repeat protein [General function pred	99.89
TIGR03866	300	PQQ_ABC_repeats PQQ-dependent catabolism-associate	99.89
KOG1036	323	consensus Mitotic spindle checkpoint protein BUB3,	99.89
KOG4378	673	consensus Nuclear protein COP1 [Signal transductio	99.88
KOG1063	764	consensus RNA polymerase II elongator complex, sub	99.88
KOG1188	376	consensus WD40 repeat protein [General function pr	99.88
KOG1273	405	consensus WD40 repeat protein [General function pr	99.88
KOG0644	1113	consensus Uncharacterized conserved protein, conta	99.88
KOG1523	361	consensus Actin-related protein Arp2/3 complex, su	99.88
KOG1587	555	consensus Cytoplasmic dynein intermediate chain [C	99.88
KOG1188	376	consensus WD40 repeat protein [General function pr	99.87
KOG0322	323	consensus G-protein beta subunit-like protein GNB1	99.87
KOG1538	1081	consensus Uncharacterized conserved protein WDR10,	99.87
KOG1334	559	consensus WD40 repeat protein [General function pr	99.87
KOG0649	325	consensus WD40 repeat protein [General function pr	99.87
KOG1445	1012	consensus Tumor-specific antigen (contains WD repe	99.86
KOG0771	398	consensus Prolactin regulatory element-binding pro	99.86
KOG2048	691	consensus WD40 repeat protein [General function pr	99.86
KOG0303	472	consensus Actin-binding protein Coronin, contains	99.86
COG2319	466	FOG: WD40 repeat [General function prediction only	99.86
KOG1034	385	consensus Transcriptional repressor EED/ESC/FIE, r	99.86
KOG1274	933	consensus WD40 repeat protein [General function pr	99.85
KOG1524	737	consensus WD40 repeat-containing protein CHE-2 [Ge	99.85
KOG1034	385	consensus Transcriptional repressor EED/ESC/FIE, r	99.85
KOG0650	733	consensus WD40 repeat nucleolar protein Bop1, invo	99.84
KOG1517	1387	consensus Guanine nucleotide binding protein MIP1	99.84
PRK01742	429	tolB translocation protein TolB; Provisional	99.84
KOG1009	434	consensus Chromatin assembly complex 1 subunit B/C	99.83
KOG1538	1081	consensus Uncharacterized conserved protein WDR10,	99.83
KOG1524	737	consensus WD40 repeat-containing protein CHE-2 [Ge	99.82
KOG2919	406	consensus Guanine nucleotide-binding protein [Gene	99.82
KOG0642	577	consensus Cell-cycle nuclear protein, contains WD-	99.81
KOG1587	555	consensus Cytoplasmic dynein intermediate chain [C	99.8
KOG0649	325	consensus WD40 repeat protein [General function pr	99.8
COG2319	466	FOG: WD40 repeat [General function prediction only	99.8
PRK03629	429	tolB translocation protein TolB; Provisional	99.79
KOG2139	445	consensus WD40 repeat protein [General function pr	99.78
KOG0322	323	consensus G-protein beta subunit-like protein GNB1	99.78
KOG2394	636	consensus WD40 protein DMR-N9 [General function pr	99.78
KOG1310	758	consensus WD40 repeat protein [General function pr	99.78
KOG2110	391	consensus Uncharacterized conserved protein, conta	99.77
KOG1272	545	consensus WD40-repeat-containing subunit of the 18	99.77
PF08662	194	eIF2A: Eukaryotic translation initiation factor eI	99.76
PRK04922	433	tolB translocation protein TolB; Provisional	99.76
KOG1523	361	consensus Actin-related protein Arp2/3 complex, su	99.76
PRK05137	435	tolB translocation protein TolB; Provisional	99.76
PRK11028	330	6-phosphogluconolactonase; Provisional	99.74
KOG0771	398	consensus Prolactin regulatory element-binding pro	99.74
PRK02889	427	tolB translocation protein TolB; Provisional	99.74
KOG3881	412	consensus Uncharacterized conserved protein [Funct	99.74
KOG2321	703	consensus WD40 repeat protein [General function pr	99.73
KOG0644	1113	consensus Uncharacterized conserved protein, conta	99.72
KOG2394	636	consensus WD40 protein DMR-N9 [General function pr	99.72
PRK11028	330	6-phosphogluconolactonase; Provisional	99.72
KOG1240	1431	consensus Protein kinase containing WD40 repeats [	99.72
KOG2110	391	consensus Uncharacterized conserved protein, conta	99.71
KOG2139	445	consensus WD40 repeat protein [General function pr	99.71
PF08662	194	eIF2A: Eukaryotic translation initiation factor eI	99.71
KOG4227	609	consensus WD40 repeat protein [General function pr	99.71
KOG1517	1387	consensus Guanine nucleotide binding protein MIP1	99.7
KOG1963	792	consensus WD40 repeat protein [General function pr	99.69
PRK00178	430	tolB translocation protein TolB; Provisional	99.67
KOG1409	404	consensus Uncharacterized conserved protein, conta	99.66
PRK01742	429	tolB translocation protein TolB; Provisional	99.66
TIGR02800	417	propeller_TolB tol-pal system beta propeller repea	99.65
KOG4547	541	consensus WD40 repeat-containing protein [General	99.65
KOG4497	447	consensus Uncharacterized conserved protein WDR8,	99.64
KOG1963	792	consensus WD40 repeat protein [General function pr	99.64
PRK04792	448	tolB translocation protein TolB; Provisional	99.64
KOG2111	346	consensus Uncharacterized conserved protein, conta	99.63
PRK01029	428	tolB translocation protein TolB; Provisional	99.6
KOG1272	545	consensus WD40-repeat-containing subunit of the 18	99.6
KOG2111	346	consensus Uncharacterized conserved protein, conta	99.6
KOG0280	339	consensus Uncharacterized conserved protein [Amino	99.6
KOG3881	412	consensus Uncharacterized conserved protein [Funct	99.59
PRK02889	427	tolB translocation protein TolB; Provisional	99.58
KOG1240	1431	consensus Protein kinase containing WD40 repeats [	99.56
KOG0280	339	consensus Uncharacterized conserved protein [Amino	99.56
PRK05137	435	tolB translocation protein TolB; Provisional	99.55
KOG4497	447	consensus Uncharacterized conserved protein WDR8,	99.55
KOG1354	433	consensus Serine/threonine protein phosphatase 2A,	99.54
PF02239	369	Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO	99.52
KOG0974	967	consensus WD-repeat protein WDR6, WD repeat superf	99.52
PRK04922	433	tolB translocation protein TolB; Provisional	99.51
KOG1064	2439	consensus RAVE (regulator of V-ATPase assembly) co	99.5
KOG1334	559	consensus WD40 repeat protein [General function pr	99.49
PRK03629	429	tolB translocation protein TolB; Provisional	99.49
KOG0309	1081	consensus Conserved WD40 repeat-containing protein	99.47
KOG4547	541	consensus WD40 repeat-containing protein [General	99.45
KOG2041	1189	consensus WD40 repeat protein [General function pr	99.45
KOG0974	967	consensus WD-repeat protein WDR6, WD repeat superf	99.44
PF10282	345	Lactonase: Lactonase, 7-bladed beta-propeller; Int	99.43
KOG1409	404	consensus Uncharacterized conserved protein, conta	99.43
COG5170	460	CDC55 Serine/threonine protein phosphatase 2A, reg	99.42
KOG2321	703	consensus WD40 repeat protein [General function pr	99.42
PF02239	369	Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO	99.39
PF10282	345	Lactonase: Lactonase, 7-bladed beta-propeller; Int	99.39
KOG1354	433	consensus Serine/threonine protein phosphatase 2A,	99.39
COG2706	346	3-carboxymuconate cyclase [Carbohydrate transport	99.35
KOG4532	344	consensus WD40-like repeat containing protein [Gen	99.35
TIGR02800	417	propeller_TolB tol-pal system beta propeller repea	99.34
KOG2315	566	consensus Predicted translation initiation factor	99.34
KOG4714	319	consensus Nucleoporin [Nuclear structure]	99.32
PRK01029	428	tolB translocation protein TolB; Provisional	99.3
PRK00178	430	tolB translocation protein TolB; Provisional	99.29
KOG4190	1034	consensus Uncharacterized conserved protein [Funct	99.29
KOG3914	390	consensus WD repeat protein WDR4 [Function unknown	99.27
KOG2695	425	consensus WD40 repeat protein [General function pr	99.27
PRK04792	448	tolB translocation protein TolB; Provisional	99.27
PRK04043	419	tolB translocation protein TolB; Provisional	99.24
KOG4714	319	consensus Nucleoporin [Nuclear structure]	99.23
KOG3914	390	consensus WD repeat protein WDR4 [Function unknown	99.2
KOG2314	698	consensus Translation initiation factor 3, subunit	99.2
KOG1064	2439	consensus RAVE (regulator of V-ATPase assembly) co	99.17
PLN02919	1057	haloacid dehalogenase-like hydrolase family protei	99.17
PF15492	282	Nbas_N: Neuroblastoma-amplified sequence, N termin	99.17
PF00400	39	WD40: WD domain, G-beta repeat; InterPro: IPR01978	99.17
KOG2695	425	consensus WD40 repeat protein [General function pr	99.15
KOG2315	566	consensus Predicted translation initiation factor	99.14
TIGR02658	352	TTQ_MADH_Hv methylamine dehydrogenase heavy chain.	99.13
COG4946	668	Uncharacterized protein related to the periplasmic	99.11
COG2706	346	3-carboxymuconate cyclase [Carbohydrate transport	99.11
PF04762	928	IKI3: IKI3 family; InterPro: IPR006849 Members of	99.09
PF08450	246	SGL: SMP-30/Gluconolaconase/LRE-like region; Inter	99.08
KOG1832	1516	consensus HIV-1 Vpr-binding protein [Cell cycle co	99.07
KOG0882	558	consensus Cyclophilin-related peptidyl-prolyl cis-	99.06
KOG1645	463	consensus RING-finger-containing E3 ubiquitin liga	99.05
KOG2041	1189	consensus WD40 repeat protein [General function pr	99.01
PLN02919	1057	haloacid dehalogenase-like hydrolase family protei	99.0
KOG0309	1081	consensus Conserved WD40 repeat-containing protein	99.0
COG4946	668	Uncharacterized protein related to the periplasmic	98.99
KOG4532	344	consensus WD40-like repeat containing protein [Gen	98.99
KOG2114	933	consensus Vacuolar assembly/sorting protein PEP5/V	98.97
KOG4190	1034	consensus Uncharacterized conserved protein [Funct	98.97
PF00400	39	WD40: WD domain, G-beta repeat; InterPro: IPR01978	98.97
COG5170	460	CDC55 Serine/threonine protein phosphatase 2A, reg	98.96
KOG1008	783	consensus Uncharacterized conserved protein, conta	98.93
KOG1912	1062	consensus WD40 repeat protein [General function pr	98.92
KOG2066	846	consensus Vacuolar assembly/sorting protein VPS41	98.91
KOG1912	1062	consensus WD40 repeat protein [General function pr	98.9
KOG1275	1118	consensus PAB-dependent poly(A) ribonuclease, subu	98.89
KOG2066	846	consensus Vacuolar assembly/sorting protein VPS41	98.89
COG5354	561	Uncharacterized protein, contains Trp-Asp (WD) rep	98.88
PRK04043	419	tolB translocation protein TolB; Provisional	98.86
PF04762	928	IKI3: IKI3 family; InterPro: IPR006849 Members of	98.81
PF07433	305	DUF1513: Protein of unknown function (DUF1513); In	98.79
KOG1645	463	consensus RING-finger-containing E3 ubiquitin liga	98.77
PF11768	545	DUF3312: Protein of unknown function (DUF3312); In	98.75
TIGR02658	352	TTQ_MADH_Hv methylamine dehydrogenase heavy chain.	98.74
KOG1275	1118	consensus PAB-dependent poly(A) ribonuclease, subu	98.73
COG5354	561	Uncharacterized protein, contains Trp-Asp (WD) rep	98.71
PF08450	246	SGL: SMP-30/Gluconolaconase/LRE-like region; Inter	98.71
KOG1832	1516	consensus HIV-1 Vpr-binding protein [Cell cycle co	98.68
TIGR03300	377	assembly_YfgL outer membrane assembly lipoprotein	98.66
KOG2314	698	consensus Translation initiation factor 3, subunit	98.63
KOG1920	1265	consensus IkappaB kinase complex, IKAP component [	98.61
KOG0882	558	consensus Cyclophilin-related peptidyl-prolyl cis-	98.6
PF07433	305	DUF1513: Protein of unknown function (DUF1513); In	98.6
KOG1008	783	consensus Uncharacterized conserved protein, conta	98.57
PF08596	395	Lgl_C: Lethal giant larvae(Lgl) like, C-terminal;	98.57
TIGR03300	377	assembly_YfgL outer membrane assembly lipoprotein	98.49
PF08553	794	VID27: VID27 cytoplasmic protein; InterPro: IPR013	98.49
PF11768	545	DUF3312: Protein of unknown function (DUF3312); In	98.39
KOG2114	933	consensus Vacuolar assembly/sorting protein PEP5/V	98.38
PF13360	238	PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A	98.36
PF08553	794	VID27: VID27 cytoplasmic protein; InterPro: IPR013	98.28
KOG3617	1416	consensus WD40 and TPR repeat-containing protein [	98.27
KOG2395	644	consensus Protein involved in vacuole import and d	98.26
KOG1920	1265	consensus IkappaB kinase complex, IKAP component [	98.24
KOG3621	726	consensus WD40 repeat-containing protein [General	98.22
smart00320	40	WD40 WD40 repeats. Note that these repeats are per	98.2
PF14783	111	BBS2_Mid: Ciliary BBSome complex subunit 2, middle	98.19
KOG4649	354	consensus PQQ (pyrrolo-quinoline quinone) repeat p	98.15
COG0823	425	TolB Periplasmic component of the Tol biopolymer t	98.12
PF06977	248	SdiA-regulated: SdiA-regulated; InterPro: IPR00972	98.1
COG0823	425	TolB Periplasmic component of the Tol biopolymer t	98.09
KOG4640	665	consensus Anaphase-promoting complex (APC), subuni	98.09
KOG3621	726	consensus WD40 repeat-containing protein [General	98.07
COG3391	381	Uncharacterized conserved protein [Function unknow	98.02
PRK11138	394	outer membrane biogenesis protein BamB; Provisiona	98.02
PF06977	248	SdiA-regulated: SdiA-regulated; InterPro: IPR00972	98.0
PF14783	111	BBS2_Mid: Ciliary BBSome complex subunit 2, middle	97.99
PRK11138	394	outer membrane biogenesis protein BamB; Provisiona	97.98
KOG4640	665	consensus Anaphase-promoting complex (APC), subuni	97.95
PF15492	282	Nbas_N: Neuroblastoma-amplified sequence, N termin	97.95
smart00320	40	WD40 WD40 repeats. Note that these repeats are per	97.92
PF04053	443	Coatomer_WDAD: Coatomer WD associated region ; Int	97.89
PF06433	342	Me-amine-dh_H: Methylamine dehydrogenase heavy cha	97.86
PF08596	395	Lgl_C: Lethal giant larvae(Lgl) like, C-terminal;	97.85
PRK02888	635	nitrous-oxide reductase; Validated	97.82
COG3391	381	Uncharacterized conserved protein [Function unknow	97.77
PF13360	238	PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A	97.77
KOG3617	1416	consensus WD40 and TPR repeat-containing protein [	97.76
PRK02888	635	nitrous-oxide reductase; Validated	97.72
PF00930	353	DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-termin	97.71
PF04053	443	Coatomer_WDAD: Coatomer WD associated region ; Int	97.65
KOG2395	644	consensus Protein involved in vacuole import and d	97.65
KOG3630	1405	consensus Nuclear pore complex, Nup214/CAN compone	97.63
COG3386	307	Gluconolactonase [Carbohydrate transport and metab	97.61
KOG2444	238	consensus WD40 repeat protein [General function pr	97.52
KOG2079	1206	consensus Vacuolar assembly/sorting protein VPS8 [	97.49
KOG2444	238	consensus WD40 repeat protein [General function pr	97.49
PF03178	321	CPSF_A: CPSF A subunit region; InterPro: IPR004871	97.49
KOG2079	1206	consensus Vacuolar assembly/sorting protein VPS8 [	97.49
PF12894	47	Apc4_WD40: Anaphase-promoting complex subunit 4 WD	97.41
PRK13616	591	lipoprotein LpqB; Provisional	97.38
PF04841	410	Vps16_N: Vps16, N-terminal region; InterPro: IPR00	97.37
KOG4649	354	consensus PQQ (pyrrolo-quinoline quinone) repeat p	97.34
PF12894	47	Apc4_WD40: Anaphase-promoting complex subunit 4 WD	97.28
cd00216	488	PQQ_DH Dehydrogenases with pyrrolo-quinoline quino	97.28
PHA02713	557	hypothetical protein; Provisional	97.27
COG3204	316	Uncharacterized protein conserved in bacteria [Fun	97.26
PRK13616	591	lipoprotein LpqB; Provisional	97.26
KOG4441	571	consensus Proteins containing BTB/POZ and Kelch do	97.23
PF05096	264	Glu_cyclase_2: Glutamine cyclotransferase; InterPr	97.17
COG3386	307	Gluconolactonase [Carbohydrate transport and metab	97.14
PF15390	671	DUF4613: Domain of unknown function (DUF4613)	97.12
PF04841	410	Vps16_N: Vps16, N-terminal region; InterPro: IPR00	97.11
PF05694	461	SBP56: 56kDa selenium binding protein (SBP56); Int	97.06
PF02897	414	Peptidase_S9_N: Prolyl oligopeptidase, N-terminal	97.0
PF10647	253	Gmad1: Lipoprotein LpqB beta-propeller domain; Int	96.99
PF03178	321	CPSF_A: CPSF A subunit region; InterPro: IPR004871	96.99
PF10647	253	Gmad1: Lipoprotein LpqB beta-propeller domain; Int	96.9
PHA02713	557	hypothetical protein; Provisional	96.89
cd00216	488	PQQ_DH Dehydrogenases with pyrrolo-quinoline quino	96.89
PF05694	461	SBP56: 56kDa selenium binding protein (SBP56); Int	96.83
PHA03098	534	kelch-like protein; Provisional	96.82
COG3490	366	Uncharacterized protein conserved in bacteria [Fun	96.81
KOG3630	1405	consensus Nuclear pore complex, Nup214/CAN compone	96.77
PF00780	275	CNH: CNH domain; InterPro: IPR001180 Based on sequ	96.73
PF12234	631	Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR0	96.72
KOG2247	615	consensus WD40 repeat-containing protein [General	96.7
PF14655	415	RAB3GAP2_N: Rab3 GTPase-activating protein regulat	96.62
PF02897	414	Peptidase_S9_N: Prolyl oligopeptidase, N-terminal	96.6
PF00930	353	DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-termin	96.58
PF14870	302	PSII_BNR: Photosynthesis system II assembly factor	96.49
PF10313	43	DUF2415: Uncharacterised protein domain (DUF2415);	96.45
COG3204	316	Uncharacterized protein conserved in bacteria [Fun	96.35
PF14870	302	PSII_BNR: Photosynthesis system II assembly factor	96.24
PF08728	717	CRT10: CRT10; InterPro: IPR014839 CRT10 is a trans	96.15
PF12234	631	Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR0	96.13
PF12657	173	TFIIIC_delta: Transcription factor IIIC subunit de	96.13
COG5167	776	VID27 Protein involved in vacuole import and degra	96.12
PF10313	43	DUF2415: Uncharacterised protein domain (DUF2415);	96.1
COG3490	366	Uncharacterized protein conserved in bacteria [Fun	96.1
KOG4499	310	consensus Ca2+-binding protein Regucalcin/SMP30 [I	96.03
COG5276	370	Uncharacterized conserved protein [Function unknow	96.02
PF14761	215	HPS3_N: Hermansky-Pudlak syndrome 3	95.99
KOG1916	1283	consensus Nuclear protein, contains WD40 repeats [	95.98
PF06433	342	Me-amine-dh_H: Methylamine dehydrogenase heavy cha	95.97
KOG4441	571	consensus Proteins containing BTB/POZ and Kelch do	95.92
TIGR02604	367	Piru_Ver_Nterm putative membrane-bound dehydrogena	95.88
PHA02790	480	Kelch-like protein; Provisional	95.82
PF05096	264	Glu_cyclase_2: Glutamine cyclotransferase; InterPr	95.79
KOG4499	310	consensus Ca2+-binding protein Regucalcin/SMP30 [I	95.65
COG5167	776	VID27 Protein involved in vacuole import and degra	95.38
PF00780	275	CNH: CNH domain; InterPro: IPR001180 Based on sequ	95.32
PHA03098	534	kelch-like protein; Provisional	95.3
KOG2377	657	consensus Uncharacterized conserved protein [Funct	95.28
COG4590	733	ABC-type uncharacterized transport system, permeas	95.26
PRK10115	686	protease 2; Provisional	95.17
PF14761	215	HPS3_N: Hermansky-Pudlak syndrome 3	94.98
KOG2377	657	consensus Uncharacterized conserved protein [Funct	94.98
TIGR02604	367	Piru_Ver_Nterm putative membrane-bound dehydrogena	94.96
PF10168	717	Nup88: Nuclear pore component; InterPro: IPR019321	94.88
PF14655	415	RAB3GAP2_N: Rab3 GTPase-activating protein regulat	94.82
PF07569	219	Hira: TUP1-like enhancer of split; InterPro: IPR01	94.8
PF15390	671	DUF4613: Domain of unknown function (DUF4613)	94.79
KOG4460	741	consensus Nuclear pore complex, Nup88/rNup84 compo	94.57
PF07676	39	PD40: WD40-like Beta Propeller Repeat; InterPro: I	94.39
KOG2247	615	consensus WD40 repeat-containing protein [General	94.38
PF08728	717	CRT10: CRT10; InterPro: IPR014839 CRT10 is a trans	94.28
PHA02790	480	Kelch-like protein; Provisional	94.25
PF07569	219	Hira: TUP1-like enhancer of split; InterPro: IPR01	94.24
PF07995	331	GSDH: Glucose / Sorbosone dehydrogenase; InterPro:	94.1
PF07676	39	PD40: WD40-like Beta Propeller Repeat; InterPro: I	93.88
PF14583	386	Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C	93.63
KOG1897	1096	consensus Damage-specific DNA binding complex, sub	93.63
PRK10115	686	protease 2; Provisional	93.59
PF10168	717	Nup88: Nuclear pore component; InterPro: IPR019321	93.51
TIGR03075	527	PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methan	93.28
PF12657	173	TFIIIC_delta: Transcription factor IIIC subunit de	93.11
TIGR03075	527	PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methan	93.02
PF14727	418	PHTB1_N: PTHB1 N-terminus	92.87
PF01731	86	Arylesterase: Arylesterase; InterPro: IPR002640 Th	92.8
KOG4460	741	consensus Nuclear pore complex, Nup88/rNup84 compo	92.7
KOG1900	1311	consensus Nuclear pore complex, Nup155 component (	92.55
COG4590	733	ABC-type uncharacterized transport system, permeas	92.41
KOG3616	1636	consensus Selective LIM binding factor [Transcript	92.04
KOG1916	1283	consensus Nuclear protein, contains WD40 repeats [	91.97
TIGR02276	42	beta_rpt_yvtn 40-residue YVTN family beta-propelle	91.9
PF07995	331	GSDH: Glucose / Sorbosone dehydrogenase; InterPro:	91.71
PRK13684	334	Ycf48-like protein; Provisional	91.64
PLN02153	341	epithiospecifier protein	91.1
PF14727	418	PHTB1_N: PTHB1 N-terminus	91.0
PF12768	281	Rax2: Cortical protein marker for cell polarity	90.84
KOG1900	1311	consensus Nuclear pore complex, Nup155 component (	90.61
PF02333	381	Phytase: Phytase; InterPro: IPR003431 Phytase (3.1	90.38
COG5276	370	Uncharacterized conserved protein [Function unknow	90.21
TIGR02276	42	beta_rpt_yvtn 40-residue YVTN family beta-propelle	90.04
PLN02193	470	nitrile-specifier protein	90.01
PF14583	386	Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C	89.71
PF11715	547	Nup160: Nucleoporin Nup120/160; InterPro: IPR02171	88.85
PF12768	281	Rax2: Cortical protein marker for cell polarity	88.82
PF13449	326	Phytase-like: Esterase-like activity of phytase	87.5
TIGR03118	336	PEPCTERM_chp_1 conserved hypothetical protein TIGR	87.43
KOG3522	925	consensus Predicted guanine nucleotide exchange fa	87.17
PF14781	136	BBS2_N: Ciliary BBSome complex subunit 2, N-termin	86.95
TIGR03606	454	non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH	86.82
PF07250	243	Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterP	86.32
PF01436	28	NHL: NHL repeat; InterPro: IPR001258 The NHL repea	85.86
KOG2280	829	consensus Vacuolar assembly/sorting protein VPS16	85.84
TIGR03548	323	mutarot_permut cyclically-permuted mutatrotase fam	85.34
KOG1983	993	consensus Tomosyn and related SNARE-interacting pr	85.1
PLN00033	398	photosystem II stability/assembly factor; Provisio	84.98
COG3823	262	Glutamine cyclotransferase [Posttranslational modi	83.32
PF14779	257	BBS1: Ciliary BBSome complex subunit 1	83.31
PRK13684	334	Ycf48-like protein; Provisional	83.26
PF11715	547	Nup160: Nucleoporin Nup120/160; InterPro: IPR02171	83.24
PF03088	89	Str_synth: Strictosidine synthase; InterPro: IPR01	83.17
smart00564	33	PQQ beta-propeller repeat. Beta-propeller repeat o	82.99
smart00036	302	CNH Domain found in NIK1-like kinases, mouse citro	82.73
TIGR03606	454	non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH	82.58
KOG3616	1636	consensus Selective LIM binding factor [Transcript	80.82
PF13449	326	Phytase-like: Esterase-like activity of phytase	80.6

>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]

Probab=100.00  E-value=2.9e-47  Score=286.98  Aligned_cols=263  Identities=22%  Similarity=0.340  Sum_probs=231.1

Q ss_pred             CCCcceEEEEECCCCCEEEEecCCCcEEEEeCCccccccccCCcccc----ccCCCCceeecCCCCCCCCcccCCCCCcC
Q 021657            7 HQDNAEFALAMCPTEPYVLSGGKDKSVVLWSIQDHITSSATDPATAK----SAGSSGSIIKQSPKPGDGNDKAADGPSVG   82 (309)
Q Consensus         7 H~~~~V~~~~~~~~~~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   82 (309)
                      -+. +|..+.|+++++.|+||+.+|.++||+..+......+......    ..........++..+.++.+++|...+..
T Consensus       174 d~r-Pis~~~fS~ds~~laT~swsG~~kvW~~~~~~~~~~l~gH~~~v~~~~fhP~~~~~~lat~s~Dgtvklw~~~~e~  252 (459)
T KOG0272|consen  174 DTR-PISGCSFSRDSKHLATGSWSGLVKVWSVPQCNLLQTLRGHTSRVGAAVFHPVDSDLNLATASADGTVKLWKLSQET  252 (459)
T ss_pred             CCC-cceeeEeecCCCeEEEeecCCceeEeecCCcceeEEEeccccceeeEEEccCCCccceeeeccCCceeeeccCCCc
Confidence            355 8999999999999999999999999999877433333222211    11111134456677889999999999999


Q ss_pred             cccccccccCCeEEEEEecCCCcEEEEEcCCCeEEEEEcCCCCcceEEEeeccCCceeEEEeccCCCCeEEEEcCCCcEE
Q 021657           83 PRGIYNGHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVR  162 (309)
Q Consensus        83 ~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~  162 (309)
                      ++..+.+|...|..++|+|+| ++|+|++.|.+-++||+++..  ......+|...|.+++|.| +|.++++|+.|..-+
T Consensus       253 ~l~~l~gH~~RVs~VafHPsG-~~L~TasfD~tWRlWD~~tk~--ElL~QEGHs~~v~~iaf~~-DGSL~~tGGlD~~~R  328 (459)
T KOG0272|consen  253 PLQDLEGHLARVSRVAFHPSG-KFLGTASFDSTWRLWDLETKS--ELLLQEGHSKGVFSIAFQP-DGSLAATGGLDSLGR  328 (459)
T ss_pred             chhhhhcchhhheeeeecCCC-ceeeecccccchhhcccccch--hhHhhcccccccceeEecC-CCceeeccCccchhh
Confidence            999999999999999999999 999999999999999999988  5677789999999999999 999999999999999


Q ss_pred             EEecCCCCCCCCCCceeeeccCCCCeeEEEEecCCCcEEEEecCCCcEEEEeCCcccccccCCCCCcCCCCceeeeecCC
Q 021657          163 MFDRRNLTSNGVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGH  242 (309)
Q Consensus       163 i~d~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~  242 (309)
                      |||+|+      ++++..+.+|..+|.+|+|+|+|.. +|+|+.|++++|||++.               ...++.+.+|
T Consensus       329 vWDlRt------gr~im~L~gH~k~I~~V~fsPNGy~-lATgs~Dnt~kVWDLR~---------------r~~ly~ipAH  386 (459)
T KOG0272|consen  329 VWDLRT------GRCIMFLAGHIKEILSVAFSPNGYH-LATGSSDNTCKVWDLRM---------------RSELYTIPAH  386 (459)
T ss_pred             eeeccc------CcEEEEecccccceeeEeECCCceE-EeecCCCCcEEEeeecc---------------cccceecccc
Confidence            999999      9999999999999999999999985 78999999999999998               4457888999


Q ss_pred             CcceeeEEEccCCCeEEEEecCCCCCCCCCCeEEEEEccccccCChhhHhHhhhcccceEEEeeeCC
Q 021657          243 RDKVVDFHWNASDPWTVVSVSDDCDSTGGGGTLQIWRMSDLIYRPQDEVLAELEKFKAHVISCTSKP  309 (309)
Q Consensus       243 ~~~v~~~~~~~~~~~~~~s~s~d~~s~~~dg~v~vw~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~P  309 (309)
                      .+-|+.|.|+|..+++++++|.|       ++++||...      +..+++.+.||.+.|.+|+.+|
T Consensus       387 ~nlVS~Vk~~p~~g~fL~TasyD-------~t~kiWs~~------~~~~~ksLaGHe~kV~s~Dis~  440 (459)
T KOG0272|consen  387 SNLVSQVKYSPQEGYFLVTASYD-------NTVKIWSTR------TWSPLKSLAGHEGKVISLDISP  440 (459)
T ss_pred             cchhhheEecccCCeEEEEcccC-------cceeeecCC------CcccchhhcCCccceEEEEecc
Confidence            99999999999888888877766       999999999      7899999999999999998875

>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]

Probab=100.00  E-value=1.4e-46  Score=280.29  Aligned_cols=269  Identities=21%  Similarity=0.310  Sum_probs=228.0

Q ss_pred             CcccCCCCCcceEEEEECCCCCEEEEecCCCcEEEEeCCccccccccCCcccc-----c---cCCCCceeecCCCCCCCC
Q 021657            1 MEILTGHQDNAEFALAMCPTEPYVLSGGKDKSVVLWSIQDHITSSATDPATAK-----S---AGSSGSIIKQSPKPGDGN   72 (309)
Q Consensus         1 l~~l~~H~~~~V~~~~~~~~~~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~-----~---~~~~~~~~~~~~~~~~~~   72 (309)
                      +.+.+||.. -|.|++|+|||+.||+|+.||+|++||.+++...-........     .   .........++....++.
T Consensus       150 ~~t~KgH~~-WVlcvawsPDgk~iASG~~dg~I~lwdpktg~~~g~~l~gH~K~It~Lawep~hl~p~~r~las~skDg~  228 (480)
T KOG0271|consen  150 LFTCKGHKN-WVLCVAWSPDGKKIASGSKDGSIRLWDPKTGQQIGRALRGHKKWITALAWEPLHLVPPCRRLASSSKDGS  228 (480)
T ss_pred             ceeecCCcc-EEEEEEECCCcchhhccccCCeEEEecCCCCCcccccccCcccceeEEeecccccCCCccceecccCCCC
Confidence            357899999 8999999999999999999999999998887444333222211     1   111122235667788999


Q ss_pred             cccCCCCCcCcccccccccCCeEEEEEecCCCcEEEEEcCCCeEEEEEcCCCCcceEEEeeccCCceeEEEec-------
Q 021657           73 DKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWN-------  145 (309)
Q Consensus        73 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~-------  145 (309)
                      +++|+......+..+.+|+.+|+|++|-.+|  ++++|+.|++|++|+...+.  ....+++|...|+.++.+       
T Consensus       229 vrIWd~~~~~~~~~lsgHT~~VTCvrwGG~g--liySgS~DrtIkvw~a~dG~--~~r~lkGHahwvN~lalsTdy~LRt  304 (480)
T KOG0271|consen  229 VRIWDTKLGTCVRTLSGHTASVTCVRWGGEG--LIYSGSQDRTIKVWRALDGK--LCRELKGHAHWVNHLALSTDYVLRT  304 (480)
T ss_pred             EEEEEccCceEEEEeccCccceEEEEEcCCc--eEEecCCCceEEEEEccchh--HHHhhcccchheeeeeccchhhhhc
Confidence            9999999999999999999999999997765  89999999999999998887  788899999999999887       


Q ss_pred             ----c------------------------CCCCeEEEEcCCCcEEEEecCCCCCCCCCCceeeeccCCCCeeEEEEecCC
Q 021657          146 ----P------------------------LDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWSPDK  197 (309)
Q Consensus       146 ----~------------------------~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~  197 (309)
                          |                        +++..|++|+.|.++.+|+....     .+++.++.+|..-|+.+.|+||+
T Consensus       305 gaf~~t~~~~~~~se~~~~Al~rY~~~~~~~~erlVSgsDd~tlflW~p~~~-----kkpi~rmtgHq~lVn~V~fSPd~  379 (480)
T KOG0271|consen  305 GAFDHTGRKPKSFSEEQKKALERYEAVLKDSGERLVSGSDDFTLFLWNPFKS-----KKPITRMTGHQALVNHVSFSPDG  379 (480)
T ss_pred             cccccccccCCChHHHHHHHHHHHHHhhccCcceeEEecCCceEEEeccccc-----ccchhhhhchhhheeeEEECCCc
Confidence                2                        12346999999999999998763     56899999999999999999999


Q ss_pred             CcEEEEecCCCcEEEEeCCcccccccCCCCCcCCCCceeeeecCCCcceeeEEEccCCCeEEEEecCCCCCCCCCCeEEE
Q 021657          198 SSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKVVDFHWNASDPWTVVSVSDDCDSTGGGGTLQI  277 (309)
Q Consensus       198 ~~l~~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~s~d~~s~~~dg~v~v  277 (309)
                      ++ +|+++.|..|++||.++               .+.+..+.+|-.+|+.++|+.|.. |++       ||+.|.++++
T Consensus       380 r~-IASaSFDkSVkLW~g~t---------------Gk~lasfRGHv~~VYqvawsaDsR-LlV-------S~SkDsTLKv  435 (480)
T KOG0271|consen  380 RY-IASASFDKSVKLWDGRT---------------GKFLASFRGHVAAVYQVAWSADSR-LLV-------SGSKDSTLKV  435 (480)
T ss_pred             cE-EEEeecccceeeeeCCC---------------cchhhhhhhccceeEEEEeccCcc-EEE-------EcCCCceEEE
Confidence            96 68999999999999998               556778999999999999999665 566       4555599999


Q ss_pred             EEccccccCChhhHhHhhhcccceEEEeeeCC
Q 021657          278 WRMSDLIYRPQDEVLAELEKFKAHVISCTSKP  309 (309)
Q Consensus       278 w~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~P  309 (309)
                      |+++      +.+....+.+|.+.|.++.|+|
T Consensus       436 w~V~------tkKl~~DLpGh~DEVf~vDwsp  461 (480)
T KOG0271|consen  436 WDVR------TKKLKQDLPGHADEVFAVDWSP  461 (480)
T ss_pred             EEee------eeeecccCCCCCceEEEEEecC
Confidence            9999      7888999999999999999998

>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]

Probab=100.00  E-value=3.9e-44  Score=267.26  Aligned_cols=229  Identities=25%  Similarity=0.482  Sum_probs=203.1

Q ss_pred             ccCCCCCcceEEEEECCCCCEEEEecCCCcEEEEeCCccccccccCCccccccCCCCceeecCCCCCCCCcccCCCCCcC
Q 021657            3 ILTGHQDNAEFALAMCPTEPYVLSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVG   82 (309)
Q Consensus         3 ~l~~H~~~~V~~~~~~~~~~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   82 (309)
                      .+.||.+ +|.|+.|+|+|..|+||+.|.++|+||+.                                        +..
T Consensus       110 S~~GH~e-~Vl~~~fsp~g~~l~tGsGD~TvR~WD~~----------------------------------------TeT  148 (480)
T KOG0271|consen  110 SIAGHGE-AVLSVQFSPTGSRLVTGSGDTTVRLWDLD----------------------------------------TET  148 (480)
T ss_pred             ccCCCCC-cEEEEEecCCCceEEecCCCceEEeeccC----------------------------------------CCC
Confidence            5789999 89999999999999999999999999997                                        345


Q ss_pred             cccccccccCCeEEEEEecCCCcEEEEEcCCCeEEEEEcCCCCcceEEEeeccCCceeEEEeccC----CCCeEEEEcCC
Q 021657           83 PRGIYNGHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPL----DDNLILTGSAD  158 (309)
Q Consensus        83 ~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~----~~~~l~~~~~d  158 (309)
                      +..+.++|...|.|++|+||| ..||+|+.||+|++||..+++. ....+.+|...|++++|.|.    ..++|++++.|
T Consensus       149 p~~t~KgH~~WVlcvawsPDg-k~iASG~~dg~I~lwdpktg~~-~g~~l~gH~K~It~Lawep~hl~p~~r~las~skD  226 (480)
T KOG0271|consen  149 PLFTCKGHKNWVLCVAWSPDG-KKIASGSKDGSIRLWDPKTGQQ-IGRALRGHKKWITALAWEPLHLVPPCRRLASSSKD  226 (480)
T ss_pred             cceeecCCccEEEEEEECCCc-chhhccccCCeEEEecCCCCCc-ccccccCcccceeEEeecccccCCCccceecccCC
Confidence            677889999999999999999 8899999999999999988874 67788999999999999762    45799999999


Q ss_pred             CcEEEEecCCCCCCCCCCceeeeccCCCCeeEEEEecCCCcEEEEecCCCcEEEEeCCcccccccCCCCCcCCCCceeee
Q 021657          159 NSVRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQ  238 (309)
Q Consensus       159 g~i~i~d~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~  238 (309)
                      |.|+|||+..      +.++..+.+|..+|+|+.|--+|  ++++|+.|++|++|+...               ..++..
T Consensus       227 g~vrIWd~~~------~~~~~~lsgHT~~VTCvrwGG~g--liySgS~DrtIkvw~a~d---------------G~~~r~  283 (480)
T KOG0271|consen  227 GSVRIWDTKL------GTCVRTLSGHTASVTCVRWGGEG--LIYSGSQDRTIKVWRALD---------------GKLCRE  283 (480)
T ss_pred             CCEEEEEccC------ceEEEEeccCccceEEEEEcCCc--eEEecCCCceEEEEEccc---------------hhHHHh
Confidence            9999999998      89999999999999999998777  678999999999999987               556778


Q ss_pred             ecCCCcceeeEEEcc-----------CCC------------------------eEEEEecCCCCCCCCCCeEEEEEcccc
Q 021657          239 HAGHRDKVVDFHWNA-----------SDP------------------------WTVVSVSDDCDSTGGGGTLQIWRMSDL  283 (309)
Q Consensus       239 ~~~~~~~v~~~~~~~-----------~~~------------------------~~~~s~s~d~~s~~~dg~v~vw~~~~~  283 (309)
                      +.+|...|+.++.+.           .+.                        ..++++|+|       .++.+|+-.. 
T Consensus       284 lkGHahwvN~lalsTdy~LRtgaf~~t~~~~~~~se~~~~Al~rY~~~~~~~~erlVSgsDd-------~tlflW~p~~-  355 (480)
T KOG0271|consen  284 LKGHAHWVNHLALSTDYVLRTGAFDHTGRKPKSFSEEQKKALERYEAVLKDSGERLVSGSDD-------FTLFLWNPFK-  355 (480)
T ss_pred             hcccchheeeeeccchhhhhccccccccccCCChHHHHHHHHHHHHHhhccCcceeEEecCC-------ceEEEecccc-
Confidence            899999999999882           122                        246666655       9999999874 


Q ss_pred             ccCChhhHhHhhhcccceEEEeeeCC
Q 021657          284 IYRPQDEVLAELEKFKAHVISCTSKP  309 (309)
Q Consensus       284 ~~~~~~~~~~~~~~h~~~v~~~~~~P  309 (309)
                          ..+++..+.+|+.-|..+.|+|
T Consensus       356 ----~kkpi~rmtgHq~lVn~V~fSP  377 (480)
T KOG0271|consen  356 ----SKKPITRMTGHQALVNHVSFSP  377 (480)
T ss_pred             ----cccchhhhhchhhheeeEEECC
Confidence                5679999999999999999998

>KOG0286 consensus G-protein beta subunit [General function prediction only]

Probab=100.00  E-value=1.9e-43  Score=254.74  Aligned_cols=267  Identities=18%  Similarity=0.303  Sum_probs=216.2

Q ss_pred             cccCCCCCcceEEEEECCCCCEEEEecCCCcEEEEeCCccccccccCCc----cccccCCCCceeecCCCCCCCCcccCC
Q 021657            2 EILTGHQDNAEFALAMCPTEPYVLSGGKDKSVVLWSIQDHITSSATDPA----TAKSAGSSGSIIKQSPKPGDGNDKAAD   77 (309)
Q Consensus         2 ~~l~~H~~~~V~~~~~~~~~~~l~t~~~dg~i~vwd~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~   77 (309)
                      ++|+||.+ .|.++.|++|.++|+++|.||.+.|||.-+..........    ..+............  .-+....+++
T Consensus        49 r~LkGH~~-Ki~~~~ws~Dsr~ivSaSqDGklIvWDs~TtnK~haipl~s~WVMtCA~sPSg~~VAcG--GLdN~Csiy~  125 (343)
T KOG0286|consen   49 RTLKGHLN-KIYAMDWSTDSRRIVSASQDGKLIVWDSFTTNKVHAIPLPSSWVMTCAYSPSGNFVACG--GLDNKCSIYP  125 (343)
T ss_pred             EEeccccc-ceeeeEecCCcCeEEeeccCCeEEEEEcccccceeEEecCceeEEEEEECCCCCeEEec--CcCceeEEEe
Confidence            58999999 8999999999999999999999999998765333222211    112222222222222  2233333333


Q ss_pred             CCCc------CcccccccccCCeEEEEEecCCCcEEEEEcCCCeEEEEEcCCCCcceEEEeeccCCceeEEEeccCCCCe
Q 021657           78 GPSV------GPRGIYNGHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNL  151 (309)
Q Consensus        78 ~~~~------~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~  151 (309)
                      +.+.      +..+.+.+|++.+.|+.|.+++  .|+|++.|.+..+||+++++  ....+.+|.+.|.++.++|.+++.
T Consensus       126 ls~~d~~g~~~v~r~l~gHtgylScC~f~dD~--~ilT~SGD~TCalWDie~g~--~~~~f~GH~gDV~slsl~p~~~nt  201 (343)
T KOG0286|consen  126 LSTRDAEGNVRVSRELAGHTGYLSCCRFLDDN--HILTGSGDMTCALWDIETGQ--QTQVFHGHTGDVMSLSLSPSDGNT  201 (343)
T ss_pred             cccccccccceeeeeecCccceeEEEEEcCCC--ceEecCCCceEEEEEcccce--EEEEecCCcccEEEEecCCCCCCe
Confidence            3322      3456689999999999998865  69999999999999999999  788999999999999999988999


Q ss_pred             EEEEcCCCcEEEEecCCCCCCCCCCceeeeccCCCCeeEEEEecCCCcEEEEecCCCcEEEEeCCcccccccCCCCCcCC
Q 021657          152 ILTGSADNSVRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNY  231 (309)
Q Consensus       152 l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~  231 (309)
                      |++|+.|+..++||+|.      +..+++|.+|...|++++|.|+|.- |++|++|+++++||+|...+.          
T Consensus       202 FvSg~cD~~aklWD~R~------~~c~qtF~ghesDINsv~ffP~G~a-fatGSDD~tcRlyDlRaD~~~----------  264 (343)
T KOG0286|consen  202 FVSGGCDKSAKLWDVRS------GQCVQTFEGHESDINSVRFFPSGDA-FATGSDDATCRLYDLRADQEL----------  264 (343)
T ss_pred             EEecccccceeeeeccC------cceeEeecccccccceEEEccCCCe-eeecCCCceeEEEeecCCcEE----------
Confidence            99999999999999999      8999999999999999999999995 789999999999999983322          


Q ss_pred             CCceeeeecCCCcceeeEEEccCCCeEEEEecCCCCCCCCCCeEEEEEccccccCChhhHhHhhhcccceEEEeeeCC
Q 021657          232 PAGLFFQHAGHRDKVVDFHWNASDPWTVVSVSDDCDSTGGGGTLQIWRMSDLIYRPQDEVLAELEKFKAHVISCTSKP  309 (309)
Q Consensus       232 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~s~d~~s~~~dg~v~vw~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~P  309 (309)
                         .++....-..+|++++|+..|..|+        +|..|..+.+||.-      .++.+..+.+|.+.|.++..+|
T Consensus       265 ---a~ys~~~~~~gitSv~FS~SGRlLf--------agy~d~~c~vWDtl------k~e~vg~L~GHeNRvScl~~s~  325 (343)
T KOG0286|consen  265 ---AVYSHDSIICGITSVAFSKSGRLLF--------AGYDDFTCNVWDTL------KGERVGVLAGHENRVSCLGVSP  325 (343)
T ss_pred             ---eeeccCcccCCceeEEEcccccEEE--------eeecCCceeEeecc------ccceEEEeeccCCeeEEEEECC
Confidence               2333344456899999999888777        66667999999998      7888999999999999998876

>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]

Probab=100.00  E-value=2.1e-44  Score=271.59  Aligned_cols=245  Identities=22%  Similarity=0.314  Sum_probs=214.9

Q ss_pred             CcccCCCCCcceEEEEECCC--CCEEEEecCCCcEEEEeCCccccccc--cCCccccccCCCCceeecCCCCCCCCcccC
Q 021657            1 MEILTGHQDNAEFALAMCPT--EPYVLSGGKDKSVVLWSIQDHITSSA--TDPATAKSAGSSGSIIKQSPKPGDGNDKAA   76 (309)
Q Consensus         1 l~~l~~H~~~~V~~~~~~~~--~~~l~t~~~dg~i~vwd~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   76 (309)
                      +++|+||++ .|.++.|+|.  +..||||+.||++++|++.+......  .+...............+.++..+...++|
T Consensus       210 ~~~l~gH~~-~v~~~~fhP~~~~~~lat~s~Dgtvklw~~~~e~~l~~l~gH~~RVs~VafHPsG~~L~TasfD~tWRlW  288 (459)
T KOG0272|consen  210 LQTLRGHTS-RVGAAVFHPVDSDLNLATASADGTVKLWKLSQETPLQDLEGHLARVSRVAFHPSGKFLGTASFDSTWRLW  288 (459)
T ss_pred             eEEEecccc-ceeeEEEccCCCccceeeeccCCceeeeccCCCcchhhhhcchhhheeeeecCCCceeeecccccchhhc
Confidence            468999999 8999999996  56899999999999999987533222  222222333334445567778889999999


Q ss_pred             CCCCcCcccccccccCCeEEEEEecCCCcEEEEEcCCCeEEEEEcCCCCcceEEEeeccCCceeEEEeccCCCCeEEEEc
Q 021657           77 DGPSVGPRGIYNGHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGS  156 (309)
Q Consensus        77 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~  156 (309)
                      |..+...+...++|...|.+++|.|+| .+++||+.|..-+|||+++++  .+..+.+|..+|.+|+|+| +|..+|+|+
T Consensus       289 D~~tk~ElL~QEGHs~~v~~iaf~~DG-SL~~tGGlD~~~RvWDlRtgr--~im~L~gH~k~I~~V~fsP-NGy~lATgs  364 (459)
T KOG0272|consen  289 DLETKSELLLQEGHSKGVFSIAFQPDG-SLAATGGLDSLGRVWDLRTGR--CIMFLAGHIKEILSVAFSP-NGYHLATGS  364 (459)
T ss_pred             ccccchhhHhhcccccccceeEecCCC-ceeeccCccchhheeecccCc--EEEEecccccceeeEeECC-CceEEeecC
Confidence            999999999999999999999999999 899999999999999999999  7889999999999999999 999999999


Q ss_pred             CCCcEEEEecCCCCCCCCCCceeeeccCCCCeeEEEEecCCCcEEEEecCCCcEEEEeCCcccccccCCCCCcCCCCcee
Q 021657          157 ADNSVRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLF  236 (309)
Q Consensus       157 ~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~  236 (309)
                      .|++++|||++.      .+.+..+.+|..-|+.+.|+|+..++|++++.|++++||..+.               ..++
T Consensus       365 ~Dnt~kVWDLR~------r~~ly~ipAH~nlVS~Vk~~p~~g~fL~TasyD~t~kiWs~~~---------------~~~~  423 (459)
T KOG0272|consen  365 SDNTCKVWDLRM------RSELYTIPAHSNLVSQVKYSPQEGYFLVTASYDNTVKIWSTRT---------------WSPL  423 (459)
T ss_pred             CCCcEEEeeecc------cccceecccccchhhheEecccCCeEEEEcccCcceeeecCCC---------------cccc
Confidence            999999999999      7889999999999999999996666788999999999999988               5677


Q ss_pred             eeecCCCcceeeEEEccCCCeEEEEecCCCCCCCCCCeEEEEE
Q 021657          237 FQHAGHRDKVVDFHWNASDPWTVVSVSDDCDSTGGGGTLQIWR  279 (309)
Q Consensus       237 ~~~~~~~~~v~~~~~~~~~~~~~~s~s~d~~s~~~dg~v~vw~  279 (309)
                      ..+.||.+.|.++.++|++..++        |++.|.++++|.
T Consensus       424 ksLaGHe~kV~s~Dis~d~~~i~--------t~s~DRT~KLW~  458 (459)
T KOG0272|consen  424 KSLAGHEGKVISLDISPDSQAIA--------TSSFDRTIKLWR  458 (459)
T ss_pred             hhhcCCccceEEEEeccCCceEE--------EeccCceeeecc
Confidence            88999999999999999988766        666669999995

>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]

Probab=100.00  E-value=1.9e-43  Score=285.58  Aligned_cols=208  Identities=29%  Similarity=0.589  Sum_probs=190.4

Q ss_pred             cccCCCCCcceEEEEECCCCCEEEEecCCCcEEEEeCCccccccccCCccccccCCCCceeecCCCCCCCCcccCCCCCc
Q 021657            2 EILTGHQDNAEFALAMCPTEPYVLSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSV   81 (309)
Q Consensus         2 ~~l~~H~~~~V~~~~~~~~~~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (309)
                      ++|-||.+ +|+.+.|+|+.++|+++|+|+++|+|.+.+                                        .
T Consensus       445 ~~L~GH~G-PVyg~sFsPd~rfLlScSED~svRLWsl~t----------------------------------------~  483 (707)
T KOG0263|consen  445 RTLYGHSG-PVYGCSFSPDRRFLLSCSEDSSVRLWSLDT----------------------------------------W  483 (707)
T ss_pred             EEeecCCC-ceeeeeecccccceeeccCCcceeeeeccc----------------------------------------c
Confidence            46889999 999999999999999999999999999984                                        3


Q ss_pred             CcccccccccCCeEEEEEecCCCcEEEEEcCCCeEEEEEcCCCCcceEEEeeccCCceeEEEeccCCCCeEEEEcCCCcE
Q 021657           82 GPRGIYNGHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSV  161 (309)
Q Consensus        82 ~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i  161 (309)
                      ..+-.+.+|..+|+++.|+|.| .+|||++.|++.++|......  ..+.+.+|-+.|.|+.|+| +.+++++|+.|.++
T Consensus       484 s~~V~y~GH~~PVwdV~F~P~G-yYFatas~D~tArLWs~d~~~--PlRifaghlsDV~cv~FHP-Ns~Y~aTGSsD~tV  559 (707)
T KOG0263|consen  484 SCLVIYKGHLAPVWDVQFAPRG-YYFATASHDQTARLWSTDHNK--PLRIFAGHLSDVDCVSFHP-NSNYVATGSSDRTV  559 (707)
T ss_pred             eeEEEecCCCcceeeEEecCCc-eEEEecCCCceeeeeecccCC--chhhhcccccccceEEECC-cccccccCCCCceE
Confidence            3455667999999999999998 999999999999999987766  7888999999999999999 99999999999999


Q ss_pred             EEEecCCCCCCCCCCceeeeccCCCCeeEEEEecCCCcEEEEecCCCcEEEEeCCcccccccCCCCCcCCCCceeeeecC
Q 021657          162 RMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAG  241 (309)
Q Consensus       162 ~i~d~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~  241 (309)
                      |+||+.+      +..++.|.+|.++|.+++|+|+|++ ||+|+.||.|.+||+..               ..++..+.+
T Consensus       560 RlWDv~~------G~~VRiF~GH~~~V~al~~Sp~Gr~-LaSg~ed~~I~iWDl~~---------------~~~v~~l~~  617 (707)
T KOG0263|consen  560 RLWDVST------GNSVRIFTGHKGPVTALAFSPCGRY-LASGDEDGLIKIWDLAN---------------GSLVKQLKG  617 (707)
T ss_pred             EEEEcCC------CcEEEEecCCCCceEEEEEcCCCce-EeecccCCcEEEEEcCC---------------Ccchhhhhc
Confidence            9999999      9999999999999999999999997 68999999999999998               556778899


Q ss_pred             CCcceeeEEEccCCCeEEEEecCCCCCCCCCCeEEEEEccccc
Q 021657          242 HRDKVVDFHWNASDPWTVVSVSDDCDSTGGGGTLQIWRMSDLI  284 (309)
Q Consensus       242 ~~~~v~~~~~~~~~~~~~~s~s~d~~s~~~dg~v~vw~~~~~~  284 (309)
                      |.+.|.++.|+.+|..|+        +||.|.+|++||+....
T Consensus       618 Ht~ti~SlsFS~dg~vLa--------sgg~DnsV~lWD~~~~~  652 (707)
T KOG0263|consen  618 HTGTIYSLSFSRDGNVLA--------SGGADNSVRLWDLTKVI  652 (707)
T ss_pred             ccCceeEEEEecCCCEEE--------ecCCCCeEEEEEchhhc
Confidence            999999999999888666        67777999999987543

>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]

Probab=100.00  E-value=9.1e-42  Score=244.50  Aligned_cols=231  Identities=24%  Similarity=0.372  Sum_probs=203.0

Q ss_pred             cccCCCCCcceEEEEECCC-CCEEEEecCCCcEEEEeCCccccccccCCccccccCCCCceeecCCCCCCCCcccCCCCC
Q 021657            2 EILTGHQDNAEFALAMCPT-EPYVLSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPS   80 (309)
Q Consensus         2 ~~l~~H~~~~V~~~~~~~~-~~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (309)
                      .+|+||++ .|+.++..+. ...+++++.|.++.+|++...                                   +...
T Consensus         9 ~tl~gh~d-~Vt~la~~~~~~~~l~sasrDk~ii~W~L~~d-----------------------------------d~~~   52 (315)
T KOG0279|consen    9 GTLEGHTD-WVTALAIKIKNSDILVSASRDKTIIVWKLTSD-----------------------------------DIKY   52 (315)
T ss_pred             eeecCCCc-eEEEEEeecCCCceEEEcccceEEEEEEeccC-----------------------------------cccc
Confidence            47899999 9999999986 567889999999999999753                                   3345


Q ss_pred             cCcccccccccCCeEEEEEecCCCcEEEEEcCCCeEEEEEcCCCCcceEEEeeccCCceeEEEeccCCCCeEEEEcCCCc
Q 021657           81 VGPRGIYNGHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNS  160 (309)
Q Consensus        81 ~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~  160 (309)
                      +.+++.+.+|...|..+..+++| +++++++.|+++++||+.+++  ..+.+.+|...|.+++|+| +...+++|+.|.+
T Consensus        53 G~~~r~~~GHsH~v~dv~~s~dg-~~alS~swD~~lrlWDl~~g~--~t~~f~GH~~dVlsva~s~-dn~qivSGSrDkT  128 (315)
T KOG0279|consen   53 GVPVRRLTGHSHFVSDVVLSSDG-NFALSASWDGTLRLWDLATGE--STRRFVGHTKDVLSVAFST-DNRQIVSGSRDKT  128 (315)
T ss_pred             CceeeeeeccceEecceEEccCC-ceEEeccccceEEEEEecCCc--EEEEEEecCCceEEEEecC-CCceeecCCCcce
Confidence            66788999999999999999999 899999999999999999987  7888999999999999999 9999999999999


Q ss_pred             EEEEecCCCCCCCCCCceeeeccC--CCCeeEEEEecCC-CcEEEEecCCCcEEEEeCCcccccccCCCCCcCCCCceee
Q 021657          161 VRMFDRRNLTSNGVGSPINKFEGH--SAAVLCVQWSPDK-SSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFF  237 (309)
Q Consensus       161 i~i~d~~~~~~~~~~~~~~~~~~~--~~~v~~~~~~~~~-~~l~~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~  237 (309)
                      |.+|+...       .+..++...  ...|+++.|+|+. +-++++++.|+++++||+++               .+...
T Consensus       129 iklwnt~g-------~ck~t~~~~~~~~WVscvrfsP~~~~p~Ivs~s~DktvKvWnl~~---------------~~l~~  186 (315)
T KOG0279|consen  129 IKLWNTLG-------VCKYTIHEDSHREWVSCVRFSPNESNPIIVSASWDKTVKVWNLRN---------------CQLRT  186 (315)
T ss_pred             eeeeeecc-------cEEEEEecCCCcCcEEEEEEcCCCCCcEEEEccCCceEEEEccCC---------------cchhh
Confidence            99999884       455555433  7889999999983 33577999999999999998               45566


Q ss_pred             eecCCCcceeeEEEccCCCeEEEEecCCCCCCCCCCeEEEEEccccccCChhhHhHhhhcccceEEEeeeCC
Q 021657          238 QHAGHRDKVVDFHWNASDPWTVVSVSDDCDSTGGGGTLQIWRMSDLIYRPQDEVLAELEKFKAHVISCTSKP  309 (309)
Q Consensus       238 ~~~~~~~~v~~~~~~~~~~~~~~s~s~d~~s~~~dg~v~vw~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~P  309 (309)
                      .+.+|+..++.++++|||...+        +||.||.+.+||++      +++.+..+. |...|.+++|+|
T Consensus       187 ~~~gh~~~v~t~~vSpDGslca--------sGgkdg~~~LwdL~------~~k~lysl~-a~~~v~sl~fsp  243 (315)
T KOG0279|consen  187 TFIGHSGYVNTVTVSPDGSLCA--------SGGKDGEAMLWDLN------EGKNLYSLE-AFDIVNSLCFSP  243 (315)
T ss_pred             ccccccccEEEEEECCCCCEEe--------cCCCCceEEEEEcc------CCceeEecc-CCCeEeeEEecC
Confidence            7889999999999999998666        88888999999999      788888776 789999999998

>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]

Probab=100.00  E-value=5e-42  Score=257.81  Aligned_cols=226  Identities=26%  Similarity=0.527  Sum_probs=199.9

Q ss_pred             ccCCCCCcceEEEEECCCCCEEEEecCCCcEEEEeCCccccccccCCccccccCCCCceeecCCCCCCCCcccCCCCCcC
Q 021657            3 ILTGHQDNAEFALAMCPTEPYVLSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVG   82 (309)
Q Consensus         3 ~l~~H~~~~V~~~~~~~~~~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   82 (309)
                      .+++|.. +|+++.|++++.++++|+.+|.|++|+..-                                         .
T Consensus       133 ilQaHDs-~Vr~m~ws~~g~wmiSgD~gG~iKyWqpnm-----------------------------------------n  170 (464)
T KOG0284|consen  133 ILQAHDS-PVRTMKWSHNGTWMISGDKGGMIKYWQPNM-----------------------------------------N  170 (464)
T ss_pred             Hhhhhcc-cceeEEEccCCCEEEEcCCCceEEecccch-----------------------------------------h
Confidence            5788999 999999999999999999999999999752                                         2


Q ss_pred             ccccccccc-CCeEEEEEecCCCcEEEEEcCCCeEEEEEcCCCCcceEEEeeccCCceeEEEeccCCCCeEEEEcCCCcE
Q 021657           83 PRGIYNGHE-DTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSV  161 (309)
Q Consensus        83 ~~~~~~~~~-~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i  161 (309)
                      .++.+..|. ..|++++|+|++ ..|++|++||+|+|||....+  ....+.+|.-.|.+++|+| ...++++|+.|..|
T Consensus       171 nVk~~~ahh~eaIRdlafSpnD-skF~t~SdDg~ikiWdf~~~k--ee~vL~GHgwdVksvdWHP-~kgLiasgskDnlV  246 (464)
T KOG0284|consen  171 NVKIIQAHHAEAIRDLAFSPND-SKFLTCSDDGTIKIWDFRMPK--EERVLRGHGWDVKSVDWHP-TKGLIASGSKDNLV  246 (464)
T ss_pred             hhHHhhHhhhhhhheeccCCCC-ceeEEecCCCeEEEEeccCCc--hhheeccCCCCcceeccCC-ccceeEEccCCcee
Confidence            344455554 899999999987 789999999999999998777  4556689999999999999 89999999999999


Q ss_pred             EEEecCCCCCCCCCCceeeeccCCCCeeEEEEecCCCcEEEEecCCCcEEEEeCCcccccccCCCCCcCCCCceeeeecC
Q 021657          162 RMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAG  241 (309)
Q Consensus       162 ~i~d~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~  241 (309)
                      ++||.++      +.++.++..|+..|..+.|+|++.+ |++++.|..+++||++.               ...++.+++
T Consensus       247 KlWDprS------g~cl~tlh~HKntVl~~~f~~n~N~-Llt~skD~~~kv~DiR~---------------mkEl~~~r~  304 (464)
T KOG0284|consen  247 KLWDPRS------GSCLATLHGHKNTVLAVKFNPNGNW-LLTGSKDQSCKVFDIRT---------------MKELFTYRG  304 (464)
T ss_pred             EeecCCC------cchhhhhhhccceEEEEEEcCCCCe-eEEccCCceEEEEehhH---------------hHHHHHhhc
Confidence            9999999      9999999999999999999999986 56999999999999997               345678899


Q ss_pred             CCcceeeEEEccCCCeEEEEecCCCCCCCCCCeEEEEEccccccCChhhHhHhh-hcccceEEEeeeCC
Q 021657          242 HRDKVVDFHWNASDPWTVVSVSDDCDSTGGGGTLQIWRMSDLIYRPQDEVLAEL-EKFKAHVISCTSKP  309 (309)
Q Consensus       242 ~~~~v~~~~~~~~~~~~~~s~s~d~~s~~~dg~v~vw~~~~~~~~~~~~~~~~~-~~h~~~v~~~~~~P  309 (309)
                      |...|++++|+|-...|++       +||.||.|..|.+.      ..+++.++ .+|...|++++|||
T Consensus       305 Hkkdv~~~~WhP~~~~lft-------sgg~Dgsvvh~~v~------~~~p~~~i~~AHd~~iwsl~~hP  360 (464)
T KOG0284|consen  305 HKKDVTSLTWHPLNESLFT-------SGGSDGSVVHWVVG------LEEPLGEIPPAHDGEIWSLAYHP  360 (464)
T ss_pred             chhhheeecccccccccee-------eccCCCceEEEecc------ccccccCCCcccccceeeeeccc
Confidence            9999999999998888887       66666999999998      45555555 48999999999998

>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]

Probab=100.00  E-value=1.4e-39  Score=233.34  Aligned_cols=214  Identities=24%  Similarity=0.444  Sum_probs=180.0

Q ss_pred             CcccCCCCCcceEEEEECCCCCEEEEecCCCcEEEEeCCccccccccCCccccccCCCCceeecCCCCCCCCcccCCCCC
Q 021657            1 MEILTGHQDNAEFALAMCPTEPYVLSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPS   80 (309)
Q Consensus         1 l~~l~~H~~~~V~~~~~~~~~~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (309)
                      ++.|+||.- .|..+..++||++.++++.|+++|+||+.+                                        
T Consensus        56 ~r~~~GHsH-~v~dv~~s~dg~~alS~swD~~lrlWDl~~----------------------------------------   94 (315)
T KOG0279|consen   56 VRRLTGHSH-FVSDVVLSSDGNFALSASWDGTLRLWDLAT----------------------------------------   94 (315)
T ss_pred             eeeeeccce-EecceEEccCCceEEeccccceEEEEEecC----------------------------------------
Confidence            467999999 999999999999999999999999999984                                        


Q ss_pred             cCcccccccccCCeEEEEEecCCCcEEEEEcCCCeEEEEEcCCCCcceEEEee-ccCCceeEEEeccCC-CCeEEEEcCC
Q 021657           81 VGPRGIYNGHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPVIKVEK-AHDADLHCVDWNPLD-DNLILTGSAD  158 (309)
Q Consensus        81 ~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~-~~~~~v~~~~~~~~~-~~~l~~~~~d  158 (309)
                      +++.+.|.+|...|.+++|++++ ..+++|+.|.+|++|++-...  ...... .+.+.|+|++|+|.. ..++++++.|
T Consensus        95 g~~t~~f~GH~~dVlsva~s~dn-~qivSGSrDkTiklwnt~g~c--k~t~~~~~~~~WVscvrfsP~~~~p~Ivs~s~D  171 (315)
T KOG0279|consen   95 GESTRRFVGHTKDVLSVAFSTDN-RQIVSGSRDKTIKLWNTLGVC--KYTIHEDSHREWVSCVRFSPNESNPIIVSASWD  171 (315)
T ss_pred             CcEEEEEEecCCceEEEEecCCC-ceeecCCCcceeeeeeecccE--EEEEecCCCcCcEEEEEEcCCCCCcEEEEccCC
Confidence            45567889999999999999998 789999999999999987554  222222 237899999999932 6799999999


Q ss_pred             CcEEEEecCCCCCCCCCCceeeeccCCCCeeEEEEecCCCcEEEEecCCCcEEEEeCCcccccccCCCCCcCCCCceeee
Q 021657          159 NSVRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQ  238 (309)
Q Consensus       159 g~i~i~d~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~  238 (309)
                      +++++||+++      .+....+.+|.+.++.++++|||. +.++|+.||.+.+||++.               .+.++.
T Consensus       172 ktvKvWnl~~------~~l~~~~~gh~~~v~t~~vSpDGs-lcasGgkdg~~~LwdL~~---------------~k~lys  229 (315)
T KOG0279|consen  172 KTVKVWNLRN------CQLRTTFIGHSGYVNTVTVSPDGS-LCASGGKDGEAMLWDLNE---------------GKNLYS  229 (315)
T ss_pred             ceEEEEccCC------cchhhccccccccEEEEEECCCCC-EEecCCCCceEEEEEccC---------------CceeEe
Confidence            9999999999      888899999999999999999999 688999999999999998               223333


Q ss_pred             ecCCCcceeeEEEccCCCeEEEEecCCCCCCCCCCeEEEEEccccccCChhhHhHhhh
Q 021657          239 HAGHRDKVVDFHWNASDPWTVVSVSDDCDSTGGGGTLQIWRMSDLIYRPQDEVLAELE  296 (309)
Q Consensus       239 ~~~~~~~v~~~~~~~~~~~~~~s~s~d~~s~~~dg~v~vw~~~~~~~~~~~~~~~~~~  296 (309)
                       .+|...|.+++|+|+..+|.+..         +..|+|||+.      .+.++.+++
T Consensus       230 -l~a~~~v~sl~fspnrywL~~at---------~~sIkIwdl~------~~~~v~~l~  271 (315)
T KOG0279|consen  230 -LEAFDIVNSLCFSPNRYWLCAAT---------ATSIKIWDLE------SKAVVEELK  271 (315)
T ss_pred             -ccCCCeEeeEEecCCceeEeecc---------CCceEEEecc------chhhhhhcc
Confidence             46888999999999765544322         2469999999      666666654

>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]

Probab=100.00  E-value=4.4e-40  Score=266.19  Aligned_cols=250  Identities=20%  Similarity=0.375  Sum_probs=212.1

Q ss_pred             ceEEEEECCCCCEEEEecCCCcEEEEeCCccccccccCCccccccCCCCceeecCCCCCCCCcccCCCCCcCcccccccc
Q 021657           11 AEFALAMCPTEPYVLSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGH   90 (309)
Q Consensus        11 ~V~~~~~~~~~~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   90 (309)
                      .++|..|++|+.+||.|-.|-.|++|.+......         .......+........+......+.........+.+|
T Consensus       380 ~v~ca~fSddssmlA~Gf~dS~i~~~Sl~p~kl~---------~lk~~~~l~~~d~~sad~~~~~~D~~~~~~~~~L~GH  450 (707)
T KOG0263|consen  380 GVTCAEFSDDSSMLACGFVDSSVRVWSLTPKKLK---------KLKDASDLSNIDTESADVDVDMLDDDSSGTSRTLYGH  450 (707)
T ss_pred             cceeEeecCCcchhhccccccEEEEEecchhhhc---------cccchhhhccccccccchhhhhccccCCceeEEeecC
Confidence            4899999999999999999999999999743111         0011111111222222333444555555666779999


Q ss_pred             cCCeEEEEEecCCCcEEEEEcCCCeEEEEEcCCCCcceEEEeeccCCceeEEEeccCCCCeEEEEcCCCcEEEEecCCCC
Q 021657           91 EDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLT  170 (309)
Q Consensus        91 ~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~  170 (309)
                      .++|..+.|+|+. ++|++|++|+++++|.+.+..  .....++|..+|..++|+| .|.+||+++.|++.++|....  
T Consensus       451 ~GPVyg~sFsPd~-rfLlScSED~svRLWsl~t~s--~~V~y~GH~~PVwdV~F~P-~GyYFatas~D~tArLWs~d~--  524 (707)
T KOG0263|consen  451 SGPVYGCSFSPDR-RFLLSCSEDSSVRLWSLDTWS--CLVIYKGHLAPVWDVQFAP-RGYYFATASHDQTARLWSTDH--  524 (707)
T ss_pred             CCceeeeeecccc-cceeeccCCcceeeeecccce--eEEEecCCCcceeeEEecC-CceEEEecCCCceeeeeeccc--
Confidence            9999999999998 899999999999999999888  6777889999999999999 999999999999999999998  


Q ss_pred             CCCCCCceeeeccCCCCeeEEEEecCCCcEEEEecCCCcEEEEeCCcccccccCCCCCcCCCCceeeeecCCCcceeeEE
Q 021657          171 SNGVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKVVDFH  250 (309)
Q Consensus       171 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~  250 (309)
                          ..+++.+.+|-+.|.|++|+|+..+ +++|+.|.++++||+.+               ...+..+.||.++|.+++
T Consensus       525 ----~~PlRifaghlsDV~cv~FHPNs~Y-~aTGSsD~tVRlWDv~~---------------G~~VRiF~GH~~~V~al~  584 (707)
T KOG0263|consen  525 ----NKPLRIFAGHLSDVDCVSFHPNSNY-VATGSSDRTVRLWDVST---------------GNSVRIFTGHKGPVTALA  584 (707)
T ss_pred             ----CCchhhhcccccccceEEECCcccc-cccCCCCceEEEEEcCC---------------CcEEEEecCCCCceEEEE
Confidence                8899999999999999999999997 57999999999999998               556778899999999999


Q ss_pred             EccCCCeEEEEecCCCCCCCCCCeEEEEEccccccCChhhHhHhhhcccceEEEeeeCC
Q 021657          251 WNASDPWTVVSVSDDCDSTGGGGTLQIWRMSDLIYRPQDEVLAELEKFKAHVISCTSKP  309 (309)
Q Consensus       251 ~~~~~~~~~~s~s~d~~s~~~dg~v~vw~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~P  309 (309)
                      |+|.|.+|+        +|+.||.|++||+.      .++++.++.+|.+.|.++.|+.
T Consensus       585 ~Sp~Gr~La--------Sg~ed~~I~iWDl~------~~~~v~~l~~Ht~ti~SlsFS~  629 (707)
T KOG0263|consen  585 FSPCGRYLA--------SGDEDGLIKIWDLA------NGSLVKQLKGHTGTIYSLSFSR  629 (707)
T ss_pred             EcCCCceEe--------ecccCCcEEEEEcC------CCcchhhhhcccCceeEEEEec
Confidence            999988766        77777999999999      7899999999999999999974

>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]

Probab=100.00  E-value=3.3e-39  Score=233.67  Aligned_cols=235  Identities=22%  Similarity=0.416  Sum_probs=193.4

Q ss_pred             cccCCCCCcceEEEEECCCCCEEEEecCCCcEEEEeCCccccccccCCccccccCCCCceeecCCCCCCCCcccCCCCCc
Q 021657            2 EILTGHQDNAEFALAMCPTEPYVLSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSV   81 (309)
Q Consensus         2 ~~l~~H~~~~V~~~~~~~~~~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (309)
                      ..+.||++ .|+.+.|+|+|.+||||+.|..|.+|++..                                       ..
T Consensus        41 m~l~gh~g-eI~~~~F~P~gs~~aSgG~Dr~I~LWnv~g---------------------------------------dc   80 (338)
T KOG0265|consen   41 MLLPGHKG-EIYTIKFHPDGSCFASGGSDRAIVLWNVYG---------------------------------------DC   80 (338)
T ss_pred             hhcCCCcc-eEEEEEECCCCCeEeecCCcceEEEEeccc---------------------------------------cc
Confidence            45789999 999999999999999999999999999763                                       22


Q ss_pred             CcccccccccCCeEEEEEecCCCcEEEEEcCCCeEEEEEcCCCCcceEEEeeccCCceeEEEeccCCCCeEEEEcCCCcE
Q 021657           82 GPRGIYNGHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSV  161 (309)
Q Consensus        82 ~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i  161 (309)
                      +....+++|.++|..+.|.+++ ..+++++.|.+|+.||.++++  ....++.|...|+++.-+..+..++.+++.|+++
T Consensus        81 eN~~~lkgHsgAVM~l~~~~d~-s~i~S~gtDk~v~~wD~~tG~--~~rk~k~h~~~vNs~~p~rrg~~lv~SgsdD~t~  157 (338)
T KOG0265|consen   81 ENFWVLKGHSGAVMELHGMRDG-SHILSCGTDKTVRGWDAETGK--RIRKHKGHTSFVNSLDPSRRGPQLVCSGSDDGTL  157 (338)
T ss_pred             cceeeeccccceeEeeeeccCC-CEEEEecCCceEEEEecccce--eeehhccccceeeecCccccCCeEEEecCCCceE
Confidence            2345567999999999999999 889999999999999999999  7888899999999998666456688889999999


Q ss_pred             EEEecCCCCCCCCCCceeeeccCCCCeeEEEEecCCCcEEEEecCCCcEEEEeCCcccccccCCCCCcCCCCceeeeecC
Q 021657          162 RMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAG  241 (309)
Q Consensus       162 ~i~d~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~  241 (309)
                      ++||+|+      ...++++. .+.+++++.|..++..++ +|+-|+.|++||++.               ....+.+.|
T Consensus       158 kl~D~R~------k~~~~t~~-~kyqltAv~f~d~s~qv~-sggIdn~ikvWd~r~---------------~d~~~~lsG  214 (338)
T KOG0265|consen  158 KLWDIRK------KEAIKTFE-NKYQLTAVGFKDTSDQVI-SGGIDNDIKVWDLRK---------------NDGLYTLSG  214 (338)
T ss_pred             EEEeecc------cchhhccc-cceeEEEEEeccccccee-eccccCceeeecccc---------------CcceEEeec
Confidence            9999998      77777776 467899999999999865 999999999999987               345677788


Q ss_pred             CCcceeeEEEccCCCeEEEEecCCCC-------------------------------------------CCCCCCeEEEE
Q 021657          242 HRDKVVDFHWNASDPWTVVSVSDDCD-------------------------------------------STGGGGTLQIW  278 (309)
Q Consensus       242 ~~~~v~~~~~~~~~~~~~~s~s~d~~-------------------------------------------s~~~dg~v~vw  278 (309)
                      |.++|+.+..+|++.+++ +-++|+.                                           +|+.|..+++|
T Consensus       215 h~DtIt~lsls~~gs~ll-snsMd~tvrvwd~rp~~p~~R~v~if~g~~hnfeknlL~cswsp~~~~i~ags~dr~vyvw  293 (338)
T KOG0265|consen  215 HADTITGLSLSRYGSFLL-SNSMDNTVRVWDVRPFAPSQRCVKIFQGHIHNFEKNLLKCSWSPNGTKITAGSADRFVYVW  293 (338)
T ss_pred             ccCceeeEEeccCCCccc-cccccceEEEEEecccCCCCceEEEeecchhhhhhhcceeeccCCCCccccccccceEEEe
Confidence            888888888888777644 3333310                                           34445555555


Q ss_pred             EccccccCChhhHhHhhhcccceEEEeeeCC
Q 021657          279 RMSDLIYRPQDEVLAELEKFKAHVISCTSKP  309 (309)
Q Consensus       279 ~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~P  309 (309)
                      |..      ....+..+.+|.+.|.+++|+|
T Consensus       294 d~~------~r~~lyklpGh~gsvn~~~Fhp  318 (338)
T KOG0265|consen  294 DTT------SRRILYKLPGHYGSVNEVDFHP  318 (338)
T ss_pred             ecc------cccEEEEcCCcceeEEEeeecC
Confidence            554      4467778899999999999998

>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]

Probab=100.00  E-value=3.3e-40  Score=248.01  Aligned_cols=218  Identities=20%  Similarity=0.409  Sum_probs=194.7

Q ss_pred             ceEEEEECCCCCEEEEecCCCcEEEEeCCccccccccCCccccccCCCCceeecCCCCCCCCcccCCCCCcCcccccccc
Q 021657           11 AEFALAMCPTEPYVLSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGH   90 (309)
Q Consensus        11 ~V~~~~~~~~~~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   90 (309)
                      +|..+.|.|+|+.|++|+..|.+.+|+...                                        ......++.|
T Consensus        98 ~V~~v~WtPeGRRLltgs~SGEFtLWNg~~----------------------------------------fnFEtilQaH  137 (464)
T KOG0284|consen   98 PVNVVRWTPEGRRLLTGSQSGEFTLWNGTS----------------------------------------FNFETILQAH  137 (464)
T ss_pred             ceeeEEEcCCCceeEeecccccEEEecCce----------------------------------------eeHHHHhhhh
Confidence            689999999999999999999999999742                                        2233456789


Q ss_pred             cCCeEEEEEecCCCcEEEEEcCCCeEEEEEcCCCCcceEEEeecc-CCceeEEEeccCCCCeEEEEcCCCcEEEEecCCC
Q 021657           91 EDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPVIKVEKAH-DADLHCVDWNPLDDNLILTGSADNSVRMFDRRNL  169 (309)
Q Consensus        91 ~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~-~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~  169 (309)
                      ..+|.++.|++++ ..+++|+.+|.|++|+.+...   ++.+.+| ...|++++|+| +...|++++.||+|+|||.+. 
T Consensus       138 Ds~Vr~m~ws~~g-~wmiSgD~gG~iKyWqpnmnn---Vk~~~ahh~eaIRdlafSp-nDskF~t~SdDg~ikiWdf~~-  211 (464)
T KOG0284|consen  138 DSPVRTMKWSHNG-TWMISGDKGGMIKYWQPNMNN---VKIIQAHHAEAIRDLAFSP-NDSKFLTCSDDGTIKIWDFRM-  211 (464)
T ss_pred             cccceeEEEccCC-CEEEEcCCCceEEecccchhh---hHHhhHhhhhhhheeccCC-CCceeEEecCCCeEEEEeccC-
Confidence            9999999999999 899999999999999987665   4444454 48999999999 899999999999999999998 


Q ss_pred             CCCCCCCceeeeccCCCCeeEEEEecCCCcEEEEecCCCcEEEEeCCcccccccCCCCCcCCCCceeeeecCCCcceeeE
Q 021657          170 TSNGVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKVVDF  249 (309)
Q Consensus       170 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~  249 (309)
                           .+.-..+.+|.-.|.+++|+|... ++|+|+.|..|++||.++               ..++.++.+|...|.++
T Consensus       212 -----~kee~vL~GHgwdVksvdWHP~kg-LiasgskDnlVKlWDprS---------------g~cl~tlh~HKntVl~~  270 (464)
T KOG0284|consen  212 -----PKEERVLRGHGWDVKSVDWHPTKG-LIASGSKDNLVKLWDPRS---------------GSCLATLHGHKNTVLAV  270 (464)
T ss_pred             -----CchhheeccCCCCcceeccCCccc-eeEEccCCceeEeecCCC---------------cchhhhhhhccceEEEE
Confidence                 677777899999999999999888 688999999999999998               66788899999999999


Q ss_pred             EEccCCCeEEEEecCCCCCCCCCCeEEEEEccccccCChhhHhHhhhcccceEEEeeeCC
Q 021657          250 HWNASDPWTVVSVSDDCDSTGGGGTLQIWRMSDLIYRPQDEVLAELEKFKAHVISCTSKP  309 (309)
Q Consensus       250 ~~~~~~~~~~~s~s~d~~s~~~dg~v~vw~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~P  309 (309)
                      .|+|++++|+        |++.|..++++|++      ..+.+..+++|+..|+++.|||
T Consensus       271 ~f~~n~N~Ll--------t~skD~~~kv~DiR------~mkEl~~~r~Hkkdv~~~~WhP  316 (464)
T KOG0284|consen  271 KFNPNGNWLL--------TGSKDQSCKVFDIR------TMKELFTYRGHKKDVTSLTWHP  316 (464)
T ss_pred             EEcCCCCeeE--------EccCCceEEEEehh------HhHHHHHhhcchhhheeecccc
Confidence            9999997766        66666999999999      7888999999999999999998

>KOG0295 consensus WD40 repeat-containing protein [Function unknown]

Probab=100.00  E-value=4.4e-39  Score=238.70  Aligned_cols=265  Identities=23%  Similarity=0.374  Sum_probs=225.7

Q ss_pred             cccCCCCCcceEEEEECCCCCEEEEecCCCcEEEEeCCccccccccCCcc----ccccCCCCceeecCCCCCCCCcccCC
Q 021657            2 EILTGHQDNAEFALAMCPTEPYVLSGGKDKSVVLWSIQDHITSSATDPAT----AKSAGSSGSIIKQSPKPGDGNDKAAD   77 (309)
Q Consensus         2 ~~l~~H~~~~V~~~~~~~~~~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~   77 (309)
                      +.+.||.. +|+.+-|+|+-..+++++.|++|++||..++..........    .......+  ..+...+.+-.+.+|+
T Consensus       102 ~~l~g~r~-~vt~v~~hp~~~~v~~as~d~tikv~D~~tg~~e~~LrGHt~sv~di~~~a~G--k~l~tcSsDl~~~LWd  178 (406)
T KOG0295|consen  102 QKLAGHRS-SVTRVIFHPSEALVVSASEDATIKVFDTETGELERSLRGHTDSVFDISFDASG--KYLATCSSDLSAKLWD  178 (406)
T ss_pred             hhhhcccc-ceeeeeeccCceEEEEecCCceEEEEEccchhhhhhhhccccceeEEEEecCc--cEEEecCCccchhhee
Confidence            46778998 89999999999999999999999999999985533222211    11222222  3334444455589999


Q ss_pred             CCC-cCcccccccccCCeEEEEEecCCCcEEEEEcCCCeEEEEEcCCCCcceEEEeeccCCceeEEEeccCCCCeEEEEc
Q 021657           78 GPS-VGPRGIYNGHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGS  156 (309)
Q Consensus        78 ~~~-~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~  156 (309)
                      ..+ .+.++.+.+|...|.+++|-|.| .++++++.|.+|+.|++.++.  .+..+.+|...|..++.+. +|.++++++
T Consensus       179 ~~~~~~c~ks~~gh~h~vS~V~f~P~g-d~ilS~srD~tik~We~~tg~--cv~t~~~h~ewvr~v~v~~-DGti~As~s  254 (406)
T KOG0295|consen  179 FDTFFRCIKSLIGHEHGVSSVFFLPLG-DHILSCSRDNTIKAWECDTGY--CVKTFPGHSEWVRMVRVNQ-DGTIIASCS  254 (406)
T ss_pred             HHHHHHHHHHhcCcccceeeEEEEecC-CeeeecccccceeEEecccce--eEEeccCchHhEEEEEecC-CeeEEEecC
Confidence            877 67788889999999999999998 889999999999999999999  8999999999999999999 999999999


Q ss_pred             CCCcEEEEecCCCCCCCCCCceeeeccCCCCeeEEEEecC--------------CCcEEEEecCCCcEEEEeCCcccccc
Q 021657          157 ADNSVRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWSPD--------------KSSVFGSSAEDGLLNIWDYEKVGKKV  222 (309)
Q Consensus       157 ~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~--------------~~~l~~~~~~dg~i~iwd~~~~~~~~  222 (309)
                      .|.++++|-+.+      +++...+..|.-+|.+++|.|.              +..++.+++.|++|++||+..     
T Consensus       255 ~dqtl~vW~~~t------~~~k~~lR~hEh~vEci~wap~~~~~~i~~at~~~~~~~~l~s~SrDktIk~wdv~t-----  323 (406)
T KOG0295|consen  255 NDQTLRVWVVAT------KQCKAELREHEHPVECIAWAPESSYPSISEATGSTNGGQVLGSGSRDKTIKIWDVST-----  323 (406)
T ss_pred             CCceEEEEEecc------chhhhhhhccccceEEEEecccccCcchhhccCCCCCccEEEeecccceEEEEeccC-----
Confidence            999999999999      7788889999999999999873              223577999999999999998     


Q ss_pred             cCCCCCcCCCCceeeeecCCCcceeeEEEccCCCeEEEEecCCCCCCCCCCeEEEEEccccccCChhhHhHhhhcccceE
Q 021657          223 EQGPRTTNYPAGLFFQHAGHRDKVVDFHWNASDPWTVVSVSDDCDSTGGGGTLQIWRMSDLIYRPQDEVLAELEKFKAHV  302 (309)
Q Consensus       223 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~s~d~~s~~~dg~v~vw~~~~~~~~~~~~~~~~~~~h~~~v  302 (309)
                                ..+++++.+|..+|..++|+|.|.+ ++++.+|       +++++||++      ..+|+++++.|+.-|
T Consensus       324 ----------g~cL~tL~ghdnwVr~~af~p~Gky-i~ScaDD-------ktlrvwdl~------~~~cmk~~~ah~hfv  379 (406)
T KOG0295|consen  324 ----------GMCLFTLVGHDNWVRGVAFSPGGKY-ILSCADD-------KTLRVWDLK------NLQCMKTLEAHEHFV  379 (406)
T ss_pred             ----------CeEEEEEecccceeeeeEEcCCCeE-EEEEecC-------CcEEEEEec------cceeeeccCCCccee
Confidence                      6789999999999999999997765 5555555       999999999      799999999999999


Q ss_pred             EEeeeC
Q 021657          303 ISCTSK  308 (309)
Q Consensus       303 ~~~~~~  308 (309)
                      ++++|+
T Consensus       380 t~lDfh  385 (406)
T KOG0295|consen  380 TSLDFH  385 (406)
T ss_pred             EEEecC
Confidence            999987

>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=6e-39  Score=227.27  Aligned_cols=226  Identities=22%  Similarity=0.384  Sum_probs=200.8

Q ss_pred             ceEEEEECCC-CCEEEEecCCCcEEEEeCCccccccccCCccccccCCCCceeecCCCCCCCCcccCCCCCcCccccccc
Q 021657           11 AEFALAMCPT-EPYVLSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNG   89 (309)
Q Consensus        11 ~V~~~~~~~~-~~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   89 (309)
                      .+..++|+++ ...+++++.||++++||+..                                       ...|+..+++
T Consensus        62 ~LfdV~Wse~~e~~~~~a~GDGSLrl~d~~~---------------------------------------~s~Pi~~~kE  102 (311)
T KOG0277|consen   62 GLFDVAWSENHENQVIAASGDGSLRLFDLTM---------------------------------------PSKPIHKFKE  102 (311)
T ss_pred             ceeEeeecCCCcceEEEEecCceEEEeccCC---------------------------------------CCcchhHHHh
Confidence            5889999996 56788999999999999652                                       3457889999


Q ss_pred             ccCCeEEEEEecCCCcEEEEEcCCCeEEEEEcCCCCcceEEEeeccCCceeEEEeccCCCCeEEEEcCCCcEEEEecCCC
Q 021657           90 HEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNL  169 (309)
Q Consensus        90 ~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~  169 (309)
                      |..+|.++.|++..+..+++++.|++|++|+...++  .+.++.+|...|+..+|+|..++++++++.|+.+++||++.+
T Consensus       103 H~~EV~Svdwn~~~r~~~ltsSWD~TiKLW~~~r~~--Sv~Tf~gh~~~Iy~a~~sp~~~nlfas~Sgd~~l~lwdvr~~  180 (311)
T KOG0277|consen  103 HKREVYSVDWNTVRRRIFLTSSWDGTIKLWDPNRPN--SVQTFNGHNSCIYQAAFSPHIPNLFASASGDGTLRLWDVRSP  180 (311)
T ss_pred             hhhheEEeccccccceeEEeeccCCceEeecCCCCc--ceEeecCCccEEEEEecCCCCCCeEEEccCCceEEEEEecCC
Confidence            999999999999887889999999999999987776  688899999999999999988999999999999999999985


Q ss_pred             CCCCCCCceeeeccCCCCeeEEEEecCCCcEEEEecCCCcEEEEeCCcccccccCCCCCcCCCCceeeeecCCCcceeeE
Q 021657          170 TSNGVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKVVDF  249 (309)
Q Consensus       170 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~  249 (309)
                           ++.+. +..|...+.++.|+.-..+++++|+.|+.|++||+++..              .+++++.+|.-.|..+
T Consensus       181 -----gk~~~-i~ah~~Eil~cdw~ky~~~vl~Tg~vd~~vr~wDir~~r--------------~pl~eL~gh~~AVRkv  240 (311)
T KOG0277|consen  181 -----GKFMS-IEAHNSEILCCDWSKYNHNVLATGGVDNLVRGWDIRNLR--------------TPLFELNGHGLAVRKV  240 (311)
T ss_pred             -----CceeE-EEeccceeEeecccccCCcEEEecCCCceEEEEehhhcc--------------ccceeecCCceEEEEE
Confidence                 55555 888999999999999999999999999999999999844              3467889999999999


Q ss_pred             EEccCCCeEEEEecCCCCCCCCCCeEEEEEccccccCChhhHhHhhhcccceEEEeeeCC
Q 021657          250 HWNASDPWTVVSVSDDCDSTGGGGTLQIWRMSDLIYRPQDEVLAELEKFKAHVISCTSKP  309 (309)
Q Consensus       250 ~~~~~~~~~~~s~s~d~~s~~~dg~v~vw~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~P  309 (309)
                      +|+|....+++++|.|       -+++|||...     +...+.+...|..-|..+.|++
T Consensus       241 k~Sph~~~lLaSasYD-------mT~riw~~~~-----~ds~~e~~~~HtEFv~g~Dws~  288 (311)
T KOG0277|consen  241 KFSPHHASLLASASYD-------MTVRIWDPER-----QDSAIETVDHHTEFVCGLDWSL  288 (311)
T ss_pred             ecCcchhhHhhhcccc-------ceEEeccccc-----chhhhhhhhccceEEecccccc
Confidence            9999999999977777       9999999983     5667788889999999999875

>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=100.00  E-value=1.1e-38  Score=223.64  Aligned_cols=266  Identities=24%  Similarity=0.326  Sum_probs=217.7

Q ss_pred             CcccCCCCCcceEEEEECCCCCEEEEecCCCcEEEEeCCccccccccCCcccc--ccCCCCceeecCCCCCCCCcccCCC
Q 021657            1 MEILTGHQDNAEFALAMCPTEPYVLSGGKDKSVVLWSIQDHITSSATDPATAK--SAGSSGSIIKQSPKPGDGNDKAADG   78 (309)
Q Consensus         1 l~~l~~H~~~~V~~~~~~~~~~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~   78 (309)
                      +++|..|++ +|..+.|+-+|+|.+|++.|++||+|+...+.........-..  -.........+.....+..+.+|+.
T Consensus        10 ~~~l~~~qg-aV~avryN~dGnY~ltcGsdrtvrLWNp~rg~liktYsghG~EVlD~~~s~Dnskf~s~GgDk~v~vwDV   88 (307)
T KOG0316|consen   10 LSILDCAQG-AVRAVRYNVDGNYCLTCGSDRTVRLWNPLRGALIKTYSGHGHEVLDAALSSDNSKFASCGGDKAVQVWDV   88 (307)
T ss_pred             ceeeccccc-ceEEEEEccCCCEEEEcCCCceEEeecccccceeeeecCCCceeeeccccccccccccCCCCceEEEEEc
Confidence            357889999 9999999999999999999999999999887555444332221  1222223344556677889999999


Q ss_pred             CCcCcccccccccCCeEEEEEecCCCcEEEEEcCCCeEEEEEcCCCCcceEEEeeccCCceeEEEeccCCCCeEEEEcCC
Q 021657           79 PSVGPRGIYNGHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSAD  158 (309)
Q Consensus        79 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d  158 (309)
                      .+++..+.+.+|.+.|+.++|+.+. ..+++|+.|.++++||.++....+++.+......|.++..   .+..+++|+.|
T Consensus        89 ~TGkv~Rr~rgH~aqVNtV~fNees-SVv~SgsfD~s~r~wDCRS~s~ePiQildea~D~V~Si~v---~~heIvaGS~D  164 (307)
T KOG0316|consen   89 NTGKVDRRFRGHLAQVNTVRFNEES-SVVASGSFDSSVRLWDCRSRSFEPIQILDEAKDGVSSIDV---AEHEIVAGSVD  164 (307)
T ss_pred             ccCeeeeecccccceeeEEEecCcc-eEEEeccccceeEEEEcccCCCCccchhhhhcCceeEEEe---cccEEEeeccC
Confidence            9999999999999999999999987 8999999999999999998887788888888899999998   56889999999


Q ss_pred             CcEEEEecCCCCCCCCCCceeeeccCCCCeeEEEEecCCCcEEEEecCCCcEEEEeCCcccccccCCCCCcCCCCceeee
Q 021657          159 NSVRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQ  238 (309)
Q Consensus       159 g~i~i~d~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~  238 (309)
                      |++|.||+|.      +.....+-  ..+|++++|+++++++| +++.|+++++.|-.+               .+++..
T Consensus       165 GtvRtydiR~------G~l~sDy~--g~pit~vs~s~d~nc~L-a~~l~stlrLlDk~t---------------GklL~s  220 (307)
T KOG0316|consen  165 GTVRTYDIRK------GTLSSDYF--GHPITSVSFSKDGNCSL-ASSLDSTLRLLDKET---------------GKLLKS  220 (307)
T ss_pred             CcEEEEEeec------ceeehhhc--CCcceeEEecCCCCEEE-Eeeccceeeecccch---------------hHHHHH
Confidence            9999999998      76655554  56899999999999876 788899999999887               456667


Q ss_pred             ecCCCcc--eeeEEEccCCCeEEEEecCCCCCCCCCCeEEEEEccccccCChhhHhHhhhcccce-EEEeeeCC
Q 021657          239 HAGHRDK--VVDFHWNASDPWTVVSVSDDCDSTGGGGTLQIWRMSDLIYRPQDEVLAELEKFKAH-VISCTSKP  309 (309)
Q Consensus       239 ~~~~~~~--v~~~~~~~~~~~~~~s~s~d~~s~~~dg~v~vw~~~~~~~~~~~~~~~~~~~h~~~-v~~~~~~P  309 (309)
                      +.+|...  -....++..... ++       +|+.||.|++||+.      ....+..++.+... |.++++||
T Consensus       221 YkGhkn~eykldc~l~qsdth-V~-------sgSEDG~Vy~wdLv------d~~~~sk~~~~~~v~v~dl~~hp  280 (307)
T KOG0316|consen  221 YKGHKNMEYKLDCCLNQSDTH-VF-------SGSEDGKVYFWDLV------DETQISKLSVVSTVIVTDLSCHP  280 (307)
T ss_pred             hcccccceeeeeeeeccccee-EE-------eccCCceEEEEEec------cceeeeeeccCCceeEEeeeccc
Confidence            7888754  345566665554 55       55555999999999      67788888888877 89999998

>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]

Probab=100.00  E-value=6.7e-39  Score=237.53  Aligned_cols=224  Identities=21%  Similarity=0.438  Sum_probs=203.9

Q ss_pred             cccCCCCCcceEEEEECCCCCEEEEecCCCcEEEEeCCccccccccCCccccccCCCCceeecCCCCCCCCcccCCCCCc
Q 021657            2 EILTGHQDNAEFALAMCPTEPYVLSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSV   81 (309)
Q Consensus         2 ~~l~~H~~~~V~~~~~~~~~~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (309)
                      +.++||.+ -|.|+++.|-.++|+||+.|++++|||+.+                                        +
T Consensus       145 rVi~gHlg-WVr~vavdP~n~wf~tgs~DrtikIwDlat----------------------------------------g  183 (460)
T KOG0285|consen  145 RVISGHLG-WVRSVAVDPGNEWFATGSADRTIKIWDLAT----------------------------------------G  183 (460)
T ss_pred             hhhhhccc-eEEEEeeCCCceeEEecCCCceeEEEEccc----------------------------------------C
Confidence            57899999 999999999999999999999999999984                                        4


Q ss_pred             CcccccccccCCeEEEEEecCCCcEEEEEcCCCeEEEEEcCCCCcceEEEeeccCCceeEEEeccCCCCeEEEEcCCCcE
Q 021657           82 GPRGIYNGHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSV  161 (309)
Q Consensus        82 ~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i  161 (309)
                      +....+.+|...|..+++++-. .++++++.|+.|+-||++..+  .+....+|-+.|.|++.+| .-..|++|+.|.++
T Consensus       184 ~LkltltGhi~~vr~vavS~rH-pYlFs~gedk~VKCwDLe~nk--vIR~YhGHlS~V~~L~lhP-Tldvl~t~grDst~  259 (460)
T KOG0285|consen  184 QLKLTLTGHIETVRGVAVSKRH-PYLFSAGEDKQVKCWDLEYNK--VIRHYHGHLSGVYCLDLHP-TLDVLVTGGRDSTI  259 (460)
T ss_pred             eEEEeecchhheeeeeeecccC-ceEEEecCCCeeEEEechhhh--hHHHhccccceeEEEeccc-cceeEEecCCcceE
Confidence            5556788999999999999988 789999999999999999888  7888999999999999999 89999999999999


Q ss_pred             EEEecCCCCCCCCCCceeeeccCCCCeeEEEEecCCCcEEEEecCCCcEEEEeCCcccccccCCCCCcCCCCceeeeecC
Q 021657          162 RMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAG  241 (309)
Q Consensus       162 ~i~d~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~  241 (309)
                      |+||+|+      ...+..+.+|..+|.++.+.|-...+ ++|+.|++|++||++.               ......+..
T Consensus       260 RvWDiRt------r~~V~~l~GH~~~V~~V~~~~~dpqv-it~S~D~tvrlWDl~a---------------gkt~~tlt~  317 (460)
T KOG0285|consen  260 RVWDIRT------RASVHVLSGHTNPVASVMCQPTDPQV-ITGSHDSTVRLWDLRA---------------GKTMITLTH  317 (460)
T ss_pred             EEeeecc------cceEEEecCCCCcceeEEeecCCCce-EEecCCceEEEeeecc---------------CceeEeeec
Confidence            9999999      88999999999999999999988875 5999999999999998               445677888


Q ss_pred             CCcceeeEEEccCCCeEEEEecCCCCCCCCCCeEEEEEccccccCChhhHhHhhhcccceEEEeee
Q 021657          242 HRDKVVDFHWNASDPWTVVSVSDDCDSTGGGGTLQIWRMSDLIYRPQDEVLAELEKFKAHVISCTS  307 (309)
Q Consensus       242 ~~~~v~~~~~~~~~~~~~~s~s~d~~s~~~dg~v~vw~~~~~~~~~~~~~~~~~~~h~~~v~~~~~  307 (309)
                      |...|.+++.+|. .+++|++|.|        .++-|++.      .+..++.+.+|.+.|.+++.
T Consensus       318 hkksvral~lhP~-e~~fASas~d--------nik~w~~p------~g~f~~nlsgh~~iintl~~  368 (460)
T KOG0285|consen  318 HKKSVRALCLHPK-ENLFASASPD--------NIKQWKLP------EGEFLQNLSGHNAIINTLSV  368 (460)
T ss_pred             ccceeeEEecCCc-hhhhhccCCc--------cceeccCC------ccchhhccccccceeeeeee
Confidence            9999999999994 5678877776        89999999      78889999999999988764

>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]

Probab=100.00  E-value=1.5e-38  Score=242.24  Aligned_cols=238  Identities=42%  Similarity=0.816  Sum_probs=205.7

Q ss_pred             ccCCCCCcceEEEEECCC-CCEEEEecCCCcEEEEeCCccccccccCCccccccCCCCceeecCCCCCCCCcccCCCCCc
Q 021657            3 ILTGHQDNAEFALAMCPT-EPYVLSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSV   81 (309)
Q Consensus         3 ~l~~H~~~~V~~~~~~~~-~~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (309)
                      +|.||++ .=++|+|++. .-.|++|+.|++|++||+......                                 ....
T Consensus       172 ~L~gH~~-eg~glsWn~~~~g~Lls~~~d~~i~lwdi~~~~~~---------------------------------~~~~  217 (422)
T KOG0264|consen  172 RLKGHEK-EGYGLSWNRQQEGTLLSGSDDHTICLWDINAESKE---------------------------------DKVV  217 (422)
T ss_pred             EEEeecc-cccccccccccceeEeeccCCCcEEEEeccccccC---------------------------------Cccc
Confidence            6889998 4589999995 457999999999999999743111                                 1123


Q ss_pred             CcccccccccCCeEEEEEecCCCcEEEEEcCCCeEEEEEcCCCCcceEEEeeccCCceeEEEeccCCCCeEEEEcCCCcE
Q 021657           82 GPRGIYNGHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSV  161 (309)
Q Consensus        82 ~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i  161 (309)
                      .+...+.+|...|.+++|++....+|++++.|+.+.|||+++...+......+|..+|.|++|+|.++..||+|+.|++|
T Consensus       218 ~p~~~~~~h~~~VeDV~~h~~h~~lF~sv~dd~~L~iwD~R~~~~~~~~~~~ah~~~vn~~~fnp~~~~ilAT~S~D~tV  297 (422)
T KOG0264|consen  218 DPKTIFSGHEDVVEDVAWHPLHEDLFGSVGDDGKLMIWDTRSNTSKPSHSVKAHSAEVNCVAFNPFNEFILATGSADKTV  297 (422)
T ss_pred             cceEEeecCCcceehhhccccchhhheeecCCCeEEEEEcCCCCCCCcccccccCCceeEEEeCCCCCceEEeccCCCcE
Confidence            45667889999999999999988999999999999999999644447778889999999999999889999999999999


Q ss_pred             EEEecCCCCCCCCCCceeeeccCCCCeeEEEEecCCCcEEEEecCCCcEEEEeCCcccccccCCCCCcCCCCceeeeecC
Q 021657          162 RMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAG  241 (309)
Q Consensus       162 ~i~d~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~  241 (309)
                      .+||+|++     .+++.++.+|+..|.+|.|+|....+||+++.|+.+.|||+..-++.+. .......|..+++...|
T Consensus       298 ~LwDlRnL-----~~~lh~~e~H~dev~~V~WSPh~etvLASSg~D~rl~vWDls~ig~eq~-~eda~dgppEllF~HgG  371 (422)
T KOG0264|consen  298 ALWDLRNL-----NKPLHTFEGHEDEVFQVEWSPHNETVLASSGTDRRLNVWDLSRIGEEQS-PEDAEDGPPELLFIHGG  371 (422)
T ss_pred             EEeechhc-----ccCceeccCCCcceEEEEeCCCCCceeEecccCCcEEEEeccccccccC-hhhhccCCcceeEEecC
Confidence            99999997     5689999999999999999999999999999999999999998776654 33444567888999999


Q ss_pred             CCcceeeEEEccCCCeEEEEecCCCCCCCCCCeEEEEEccccccCC
Q 021657          242 HRDKVVDFHWNASDPWTVVSVSDDCDSTGGGGTLQIWRMSDLIYRP  287 (309)
Q Consensus       242 ~~~~v~~~~~~~~~~~~~~s~s~d~~s~~~dg~v~vw~~~~~~~~~  287 (309)
                      |...|..+.|+|+.++.++|+++|       +.+.||+..+..+.+
T Consensus       372 H~~kV~DfsWnp~ePW~I~SvaeD-------N~LqIW~~s~~i~~~  410 (422)
T KOG0264|consen  372 HTAKVSDFSWNPNEPWTIASVAED-------NILQIWQMAENIYNP  410 (422)
T ss_pred             cccccccccCCCCCCeEEEEecCC-------ceEEEeeccccccCc
Confidence            999999999999999999988888       999999998655443

>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]

Probab=100.00  E-value=6.4e-38  Score=221.48  Aligned_cols=234  Identities=17%  Similarity=0.346  Sum_probs=198.8

Q ss_pred             CcccCCCCCcceEEEEECCCCCEEEEecCCCcEEEEeCCccccccccCCccccccCCCCceeecCCCCCCCCcccCCCCC
Q 021657            1 MEILTGHQDNAEFALAMCPTEPYVLSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPS   80 (309)
Q Consensus         1 l~~l~~H~~~~V~~~~~~~~~~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (309)
                      +.++.+|+. -|+++.|..+|+++.|||+||++||||++...                                      
T Consensus        76 v~t~e~h~k-NVtaVgF~~dgrWMyTgseDgt~kIWdlR~~~--------------------------------------  116 (311)
T KOG0315|consen   76 VATFEGHTK-NVTAVGFQCDGRWMYTGSEDGTVKIWDLRSLS--------------------------------------  116 (311)
T ss_pred             eeEEeccCC-ceEEEEEeecCeEEEecCCCceEEEEeccCcc--------------------------------------
Confidence            357899998 69999999999999999999999999998521                                      


Q ss_pred             cCcccccccccCCeEEEEEecCCCcEEEEEcCCCeEEEEEcCCCCcceEEEeeccCCceeEEEeccCCCCeEEEEcCCCc
Q 021657           81 VGPRGIYNGHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNS  160 (309)
Q Consensus        81 ~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~  160 (309)
                         .+....|..+|+++..+|+. ..|++|..+|.|++||+..... ...........|.++...| +|.+++.+...|+
T Consensus       117 ---~qR~~~~~spVn~vvlhpnQ-teLis~dqsg~irvWDl~~~~c-~~~liPe~~~~i~sl~v~~-dgsml~a~nnkG~  190 (311)
T KOG0315|consen  117 ---CQRNYQHNSPVNTVVLHPNQ-TELISGDQSGNIRVWDLGENSC-THELIPEDDTSIQSLTVMP-DGSMLAAANNKGN  190 (311)
T ss_pred             ---cchhccCCCCcceEEecCCc-ceEEeecCCCcEEEEEccCCcc-ccccCCCCCcceeeEEEcC-CCcEEEEecCCcc
Confidence               12334577999999999987 7799999999999999987752 1222334456899999999 9999999999999


Q ss_pred             EEEEecCCCCCCCCCCceeeeccCCCCeeEEEEecCCCcEEEEecCCCcEEEEeCCcccccccCCCCCcCCCCceeeeec
Q 021657          161 VRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHA  240 (309)
Q Consensus       161 i~i~d~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~  240 (309)
                      .++|++-..+......++.+++.|.+.+....+|||+++ ||+++.|.+++||+.+.+              ...-..+.
T Consensus       191 cyvW~l~~~~~~s~l~P~~k~~ah~~~il~C~lSPd~k~-lat~ssdktv~iwn~~~~--------------~kle~~l~  255 (311)
T KOG0315|consen  191 CYVWRLLNHQTASELEPVHKFQAHNGHILRCLLSPDVKY-LATCSSDKTVKIWNTDDF--------------FKLELVLT  255 (311)
T ss_pred             EEEEEccCCCccccceEhhheecccceEEEEEECCCCcE-EEeecCCceEEEEecCCc--------------eeeEEEee
Confidence            999999876555557788899999999999999999997 679999999999999984              12345678


Q ss_pred             CCCcceeeEEEccCCCeEEEEecCCCCCCCCCCeEEEEEccccccCChhhHhHhhhcccceEEEeeeC
Q 021657          241 GHRDKVVDFHWNASDPWTVVSVSDDCDSTGGGGTLQIWRMSDLIYRPQDEVLAELEKFKAHVISCTSK  308 (309)
Q Consensus       241 ~~~~~v~~~~~~~~~~~~~~s~s~d~~s~~~dg~v~vw~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~  308 (309)
                      +|+.++++++||-++.+|+        ||+.|+.+++|++.      .++.++...+|.....|++..
T Consensus       256 gh~rWvWdc~FS~dg~Ylv--------Tassd~~~rlW~~~------~~k~v~qy~gh~K~~vc~~ln  309 (311)
T KOG0315|consen  256 GHQRWVWDCAFSADGEYLV--------TASSDHTARLWDLS------AGKEVRQYQGHHKAAVCVALN  309 (311)
T ss_pred             cCCceEEeeeeccCccEEE--------ecCCCCceeecccc------cCceeeecCCcccccEEEEee
Confidence            9999999999999999887        88888999999999      788889999999888887753

>KOG0645 consensus WD40 repeat protein [General function prediction only]

Probab=100.00  E-value=7.8e-37  Score=218.43  Aligned_cols=252  Identities=24%  Similarity=0.406  Sum_probs=205.5

Q ss_pred             CcccCCCCCcceEEEEECCC-CCEEEEecCCCcEEEEeCCccccccccCCccccccCCCCceeecCCCCCCCCcccCCCC
Q 021657            1 MEILTGHQDNAEFALAMCPT-EPYVLSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGP   79 (309)
Q Consensus         1 l~~l~~H~~~~V~~~~~~~~-~~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   79 (309)
                      ++.++||++ .|+.++|+|- |..||||+.|+.||+|+...+                                     .
T Consensus         7 ~~~~~gh~~-r~W~~awhp~~g~ilAscg~Dk~vriw~~~~~-------------------------------------~   48 (312)
T KOG0645|consen    7 EQKLSGHKD-RVWSVAWHPGKGVILASCGTDKAVRIWSTSSG-------------------------------------D   48 (312)
T ss_pred             EEeecCCCC-cEEEEEeccCCceEEEeecCCceEEEEecCCC-------------------------------------C
Confidence            367899999 8999999997 889999999999999998732                                     1


Q ss_pred             CcCccccc-ccccCCeEEEEEecCCCcEEEEEcCCCeEEEEEcCCCCcceEEEeeccCCceeEEEeccCCCCeEEEEcCC
Q 021657           80 SVGPRGIY-NGHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSAD  158 (309)
Q Consensus        80 ~~~~~~~~-~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d  158 (309)
                      +..+...+ .+|+..|.+++|+|.| ++|++++.|.++.||.-..++......+.+|...|.|++|++ +|++||++++|
T Consensus        49 s~~ck~vld~~hkrsVRsvAwsp~g-~~La~aSFD~t~~Iw~k~~~efecv~~lEGHEnEVK~Vaws~-sG~~LATCSRD  126 (312)
T KOG0645|consen   49 SWTCKTVLDDGHKRSVRSVAWSPHG-RYLASASFDATVVIWKKEDGEFECVATLEGHENEVKCVAWSA-SGNYLATCSRD  126 (312)
T ss_pred             cEEEEEeccccchheeeeeeecCCC-cEEEEeeccceEEEeecCCCceeEEeeeeccccceeEEEEcC-CCCEEEEeeCC
Confidence            11112222 4799999999999999 899999999999999988888778899999999999999999 99999999999


Q ss_pred             CcEEEEecCCCCCCCCCCceeeeccCCCCeeEEEEecCCCcEEEEecCCCcEEEEeCCcccccccCCCCCcCCCCceeee
Q 021657          159 NSVRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQ  238 (309)
Q Consensus       159 g~i~i~d~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~  238 (309)
                      ..|-||.+.....   ..++..++.|...|..+.|+|... ||++++.|++|++|+-...+            .-.+..+
T Consensus       127 KSVWiWe~deddE---fec~aVL~~HtqDVK~V~WHPt~d-lL~S~SYDnTIk~~~~~~dd------------dW~c~~t  190 (312)
T KOG0645|consen  127 KSVWIWEIDEDDE---FECIAVLQEHTQDVKHVIWHPTED-LLFSCSYDNTIKVYRDEDDD------------DWECVQT  190 (312)
T ss_pred             CeEEEEEecCCCc---EEEEeeeccccccccEEEEcCCcc-eeEEeccCCeEEEEeecCCC------------CeeEEEE
Confidence            9999999985322   667888999999999999999877 67899999999999977412            1457788


Q ss_pred             ecCCCcceeeEEEccCCCeEEEEecCCCC-----------------------------CCCCCCeEEEEEccccccCChh
Q 021657          239 HAGHRDKVVDFHWNASDPWTVVSVSDDCD-----------------------------STGGGGTLQIWRMSDLIYRPQD  289 (309)
Q Consensus       239 ~~~~~~~v~~~~~~~~~~~~~~s~s~d~~-----------------------------s~~~dg~v~vw~~~~~~~~~~~  289 (309)
                      +.+|...|.+++|+|.|.. ++++++|..                             |++.|+.|++|.-......|.-
T Consensus       191 l~g~~~TVW~~~F~~~G~r-l~s~sdD~tv~Iw~~~~~~~~~~sr~~Y~v~W~~~~IaS~ggD~~i~lf~~s~~~d~p~~  269 (312)
T KOG0645|consen  191 LDGHENTVWSLAFDNIGSR-LVSCSDDGTVSIWRLYTDLSGMHSRALYDVPWDNGVIASGGGDDAIRLFKESDSPDEPSW  269 (312)
T ss_pred             ecCccceEEEEEecCCCce-EEEecCCcceEeeeeccCcchhcccceEeeeecccceEeccCCCEEEEEEecCCCCCchH
Confidence            9999999999999998865 566776621                             5666666666666544444555


Q ss_pred             hHhH-hhhcccceEEEeeeCC
Q 021657          290 EVLA-ELEKFKAHVISCTSKP  309 (309)
Q Consensus       290 ~~~~-~~~~h~~~v~~~~~~P  309 (309)
                      +.+. .-..|...|.+++|.|
T Consensus       270 ~l~~~~~~aHe~dVNsV~w~p  290 (312)
T KOG0645|consen  270 NLLAKKEGAHEVDVNSVQWNP  290 (312)
T ss_pred             HHHHhhhcccccccceEEEcC
Confidence            5554 3457888999999987

>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=100.00  E-value=8.3e-38  Score=251.19  Aligned_cols=234  Identities=27%  Similarity=0.525  Sum_probs=206.9

Q ss_pred             cccCCCCCcceEEEEECCCCCEEEEecCCCcEEEEeCCccccccccCCccccccCCCCceeecCCCCCCCCcccCCCCCc
Q 021657            2 EILTGHQDNAEFALAMCPTEPYVLSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSV   81 (309)
Q Consensus         2 ~~l~~H~~~~V~~~~~~~~~~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (309)
                      +.+.||++ .|.+++...+|.+|+||+.|.++++|.++++.                                    ...
T Consensus       359 ~ii~GH~e-~vlSL~~~~~g~llat~sKD~svilWr~~~~~------------------------------------~~~  401 (775)
T KOG0319|consen  359 QIIPGHTE-AVLSLDVWSSGDLLATGSKDKSVILWRLNNNC------------------------------------SKS  401 (775)
T ss_pred             EEEeCchh-heeeeeecccCcEEEEecCCceEEEEEecCCc------------------------------------chh
Confidence            36789999 89999977788899999999999999985321                                    122


Q ss_pred             CcccccccccCCeEEEEEecCCCcEEEEEcCCCeEEEEEcCCCCc---ceEE----EeeccCCceeEEEeccCCCCeEEE
Q 021657           82 GPRGIYNGHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTS---PVIK----VEKAHDADLHCVDWNPLDDNLILT  154 (309)
Q Consensus        82 ~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~---~~~~----~~~~~~~~v~~~~~~~~~~~~l~~  154 (309)
                      .++....+|+..|.+++++..+..+|+++|.|+++++|++...+.   +...    ....|...|+|++++| +..++++
T Consensus       402 ~~~a~~~gH~~svgava~~~~~asffvsvS~D~tlK~W~l~~s~~~~~~~~~~~~~t~~aHdKdIN~Vaia~-ndkLiAT  480 (775)
T KOG0319|consen  402 LCVAQANGHTNSVGAVAGSKLGASFFVSVSQDCTLKLWDLPKSKETAFPIVLTCRYTERAHDKDINCVAIAP-NDKLIAT  480 (775)
T ss_pred             hhhhhhcccccccceeeecccCccEEEEecCCceEEEecCCCcccccccceehhhHHHHhhcccccceEecC-CCceEEe
Confidence            345667899999999999988889999999999999999976221   1122    3457999999999999 9999999


Q ss_pred             EcCCCcEEEEecCCCCCCCCCCceeeeccCCCCeeEEEEecCCCcEEEEecCCCcEEEEeCCcccccccCCCCCcCCCCc
Q 021657          155 GSADNSVRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAG  234 (309)
Q Consensus       155 ~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~  234 (309)
                      |+.|.+.++|++.+      ......+.+|...|.++.|+|..+ ++|+++.|++|+||.+.+               ..
T Consensus       481 ~SqDktaKiW~le~------~~l~~vLsGH~RGvw~V~Fs~~dq-~laT~SgD~TvKIW~is~---------------fS  538 (775)
T KOG0319|consen  481 GSQDKTAKIWDLEQ------LRLLGVLSGHTRGVWCVSFSKNDQ-LLATCSGDKTVKIWSIST---------------FS  538 (775)
T ss_pred             cccccceeeecccC------ceEEEEeeCCccceEEEEeccccc-eeEeccCCceEEEEEecc---------------ce
Confidence            99999999999997      899999999999999999999988 678999999999999998               66


Q ss_pred             eeeeecCCCcceeeEEEccCCCeEEEEecCCCCCCCCCCeEEEEEccccccCChhhHhHhhhcccceEEEeeeCC
Q 021657          235 LFFQHAGHRDKVVDFHWNASDPWTVVSVSDDCDSTGGGGTLQIWRMSDLIYRPQDEVLAELEKFKAHVISCTSKP  309 (309)
Q Consensus       235 ~~~~~~~~~~~v~~~~~~~~~~~~~~s~s~d~~s~~~dg~v~vw~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~P  309 (309)
                      ++.++.||...|..+.|-.++.+++        |++.||.|++|+++      +.+|+.++.+|.+.|++++-.|
T Consensus       539 ClkT~eGH~~aVlra~F~~~~~qli--------S~~adGliKlWnik------t~eC~~tlD~H~DrvWaL~~~~  599 (775)
T KOG0319|consen  539 CLKTFEGHTSAVLRASFIRNGKQLI--------SAGADGLIKLWNIK------TNECEMTLDAHNDRVWALSVSP  599 (775)
T ss_pred             eeeeecCccceeEeeeeeeCCcEEE--------eccCCCcEEEEecc------chhhhhhhhhccceeEEEeecC
Confidence            7889999999999999999999988        88888999999999      8999999999999999998765

>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]

Probab=100.00  E-value=4.1e-37  Score=235.40  Aligned_cols=218  Identities=23%  Similarity=0.443  Sum_probs=195.2

Q ss_pred             ceEEEEECCCCCEEEEecCCCcEEEEeCCccccccccCCccccccCCCCceeecCCCCCCCCcccCCCCCcCcccccccc
Q 021657           11 AEFALAMCPTEPYVLSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGH   90 (309)
Q Consensus        11 ~V~~~~~~~~~~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   90 (309)
                      .|++++|+.+|.+||+|+.||.+|+|+...                                         .....+..|
T Consensus       237 dVT~L~Wn~~G~~LatG~~~G~~riw~~~G-----------------------------------------~l~~tl~~H  275 (524)
T KOG0273|consen  237 DVTSLDWNNDGTLLATGSEDGEARIWNKDG-----------------------------------------NLISTLGQH  275 (524)
T ss_pred             CcceEEecCCCCeEEEeecCcEEEEEecCc-----------------------------------------hhhhhhhcc
Confidence            589999999999999999999999999853                                         355677889


Q ss_pred             cCCeEEEEEecCCCcEEEEEcCCCeEEEEEcCCCCcceEEEeeccCCceeEEEeccCCCCeEEEEcCCCcEEEEecCCCC
Q 021657           91 EDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLT  170 (309)
Q Consensus        91 ~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~  170 (309)
                      .++|.++.|+..| .+|++++-|+++.+||..+++  ....+.-|..+-..+.|-  +...|++++.|+.|+++.+..  
T Consensus       276 kgPI~slKWnk~G-~yilS~~vD~ttilwd~~~g~--~~q~f~~~s~~~lDVdW~--~~~~F~ts~td~~i~V~kv~~--  348 (524)
T KOG0273|consen  276 KGPIFSLKWNKKG-TYILSGGVDGTTILWDAHTGT--VKQQFEFHSAPALDVDWQ--SNDEFATSSTDGCIHVCKVGE--  348 (524)
T ss_pred             CCceEEEEEcCCC-CEEEeccCCccEEEEeccCce--EEEeeeeccCCccceEEe--cCceEeecCCCceEEEEEecC--
Confidence            9999999999999 899999999999999999888  667777788876788886  467899999999999999998  


Q ss_pred             CCCCCCceeeeccCCCCeeEEEEecCCCcEEEEecCCCcEEEEeCCcccccccCCCCCcCCCCceeeeecCCCcceeeEE
Q 021657          171 SNGVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKVVDFH  250 (309)
Q Consensus       171 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~  250 (309)
                          ..|+.++.+|.++|++|.|+|.+. ||++++.|++++||.+..               ......+.+|+..|+.+.
T Consensus       349 ----~~P~~t~~GH~g~V~alk~n~tg~-LLaS~SdD~TlkiWs~~~---------------~~~~~~l~~Hskei~t~~  408 (524)
T KOG0273|consen  349 ----DRPVKTFIGHHGEVNALKWNPTGS-LLASCSDDGTLKIWSMGQ---------------SNSVHDLQAHSKEIYTIK  408 (524)
T ss_pred             ----CCcceeeecccCceEEEEECCCCc-eEEEecCCCeeEeeecCC---------------CcchhhhhhhccceeeEe
Confidence                889999999999999999999999 688999999999999887               455677899999999999


Q ss_pred             EccCCC--------eEEEEecCCCCCCCCCCeEEEEEccccccCChhhHhHhhhcccceEEEeeeCC
Q 021657          251 WNASDP--------WTVVSVSDDCDSTGGGGTLQIWRMSDLIYRPQDEVLAELEKFKAHVISCTSKP  309 (309)
Q Consensus       251 ~~~~~~--------~~~~s~s~d~~s~~~dg~v~vw~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~P  309 (309)
                      |+|+++        ..+++++.|       ++|++||+.      .+.++.+|..|+.+|.+++|+|
T Consensus       409 wsp~g~v~~n~~~~~~l~sas~d-------stV~lwdv~------~gv~i~~f~kH~~pVysvafS~  462 (524)
T KOG0273|consen  409 WSPTGPVTSNPNMNLMLASASFD-------STVKLWDVE------SGVPIHTLMKHQEPVYSVAFSP  462 (524)
T ss_pred             ecCCCCccCCCcCCceEEEeecC-------CeEEEEEcc------CCceeEeeccCCCceEEEEecC
Confidence            999764        356655555       999999999      7999999999999999999997

>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]

Probab=100.00  E-value=1.2e-36  Score=250.71  Aligned_cols=228  Identities=28%  Similarity=0.501  Sum_probs=195.0

Q ss_pred             cccCCCCCcceEEEEECCCCCEEEEecCCCcEEEEeCCccccccccCCccccccCCCCceeecCCCCCCCCcccCCCCCc
Q 021657            2 EILTGHQDNAEFALAMCPTEPYVLSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSV   81 (309)
Q Consensus         2 ~~l~~H~~~~V~~~~~~~~~~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (309)
                      +.+.+|.. .|++++|+|+++++++++.|++|+|||+..                                       ..
T Consensus       197 ~~l~~h~~-~v~~~~fs~d~~~l~s~s~D~tiriwd~~~---------------------------------------~~  236 (456)
T KOG0266|consen  197 RELSGHTR-GVSDVAFSPDGSYLLSGSDDKTLRIWDLKD---------------------------------------DG  236 (456)
T ss_pred             cccccccc-ceeeeEECCCCcEEEEecCCceEEEeeccC---------------------------------------CC
Confidence            56789999 899999999999999999999999999942                                       34


Q ss_pred             CcccccccccCCeEEEEEecCCCcEEEEEcCCCeEEEEEcCCCCcceEEEeeccCCceeEEEeccCCCCeEEEEcCCCcE
Q 021657           82 GPRGIYNGHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSV  161 (309)
Q Consensus        82 ~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i  161 (309)
                      ..++++.+|...|++++|+|++ +++++|+.|++|+|||+++++  +...+.+|...|++++|++ ++++|++++.|+.|
T Consensus       237 ~~~~~l~gH~~~v~~~~f~p~g-~~i~Sgs~D~tvriWd~~~~~--~~~~l~~hs~~is~~~f~~-d~~~l~s~s~d~~i  312 (456)
T KOG0266|consen  237 RNLKTLKGHSTYVTSVAFSPDG-NLLVSGSDDGTVRIWDVRTGE--CVRKLKGHSDGISGLAFSP-DGNLLVSASYDGTI  312 (456)
T ss_pred             eEEEEecCCCCceEEEEecCCC-CEEEEecCCCcEEEEeccCCe--EEEeeeccCCceEEEEECC-CCCEEEEcCCCccE
Confidence            5577889999999999999999 999999999999999999987  8899999999999999999 99999999999999


Q ss_pred             EEEecCCCCCCCCCC--ceeeeccCCCC--eeEEEEecCCCcEEEEecCCCcEEEEeCCcccccccCCCCCcCCCCceee
Q 021657          162 RMFDRRNLTSNGVGS--PINKFEGHSAA--VLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFF  237 (309)
Q Consensus       162 ~i~d~~~~~~~~~~~--~~~~~~~~~~~--v~~~~~~~~~~~l~~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~  237 (309)
                      ++||+.+      +.  ++..+..+...  +++++|+|++.++ +++..|+.+++||++.               .....
T Consensus       313 ~vwd~~~------~~~~~~~~~~~~~~~~~~~~~~fsp~~~~l-l~~~~d~~~~~w~l~~---------------~~~~~  370 (456)
T KOG0266|consen  313 RVWDLET------GSKLCLKLLSGAENSAPVTSVQFSPNGKYL-LSASLDRTLKLWDLRS---------------GKSVG  370 (456)
T ss_pred             EEEECCC------CceeeeecccCCCCCCceeEEEECCCCcEE-EEecCCCeEEEEEccC---------------Cccee
Confidence            9999998      66  45666665554  9999999999985 5999999999999998               33444


Q ss_pred             eecCCCcc---eeeEEEccCCCeEEEEecCCCCCCCCCCeEEEEEccccccCChhhHhHhhhcc-cceEEEeeeCC
Q 021657          238 QHAGHRDK---VVDFHWNASDPWTVVSVSDDCDSTGGGGTLQIWRMSDLIYRPQDEVLAELEKF-KAHVISCTSKP  309 (309)
Q Consensus       238 ~~~~~~~~---v~~~~~~~~~~~~~~s~s~d~~s~~~dg~v~vw~~~~~~~~~~~~~~~~~~~h-~~~v~~~~~~P  309 (309)
                      ...+|...   +.+...++.+.+++        +|+.|+.|++|++.      ++..+..+.+| ...+..++++|
T Consensus       371 ~~~~~~~~~~~~~~~~~~~~~~~i~--------sg~~d~~v~~~~~~------s~~~~~~l~~h~~~~~~~~~~~~  432 (456)
T KOG0266|consen  371 TYTGHSNLVRCIFSPTLSTGGKLIY--------SGSEDGSVYVWDSS------SGGILQRLEGHSKAAVSDLSSHP  432 (456)
T ss_pred             eecccCCcceeEecccccCCCCeEE--------EEeCCceEEEEeCC------ccchhhhhcCCCCCceeccccCC
Confidence            55666553   34445566666555        56666999999999      78889999999 88999998886

>KOG0286 consensus G-protein beta subunit [General function prediction only]

Probab=100.00  E-value=1.1e-36  Score=220.03  Aligned_cols=235  Identities=22%  Similarity=0.345  Sum_probs=195.1

Q ss_pred             ceEEEEECCCCCEEEEecCCCcEEEEeCCccccccccCCccccccCCCCc--------eeecCCCCCCCCcccCCCCCcC
Q 021657           11 AEFALAMCPTEPYVLSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGS--------IIKQSPKPGDGNDKAADGPSVG   82 (309)
Q Consensus        11 ~V~~~~~~~~~~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~   82 (309)
                      -|..++|+|.|+++|+|+-|+...||++............. ........        ...+.+++++....+||+++++
T Consensus        99 WVMtCA~sPSg~~VAcGGLdN~Csiy~ls~~d~~g~~~v~r-~l~gHtgylScC~f~dD~~ilT~SGD~TCalWDie~g~  177 (343)
T KOG0286|consen   99 WVMTCAYSPSGNFVACGGLDNKCSIYPLSTRDAEGNVRVSR-ELAGHTGYLSCCRFLDDNHILTGSGDMTCALWDIETGQ  177 (343)
T ss_pred             eEEEEEECCCCCeEEecCcCceeEEEecccccccccceeee-eecCccceeEEEEEcCCCceEecCCCceEEEEEcccce
Confidence            58899999999999999999999999998541111111000 00000000        2234456778899999999999


Q ss_pred             cccccccccCCeEEEEEecCCCcEEEEEcCCCeEEEEEcCCCCcceEEEeeccCCceeEEEeccCCCCeEEEEcCCCcEE
Q 021657           83 PRGIYNGHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVR  162 (309)
Q Consensus        83 ~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~  162 (309)
                      .+..+.+|.+.|.++.++|...+.|++|+-|+..+|||++.+.  ..+.+.+|...|++++|.| +|.-|++|+.|++.|
T Consensus       178 ~~~~f~GH~gDV~slsl~p~~~ntFvSg~cD~~aklWD~R~~~--c~qtF~ghesDINsv~ffP-~G~afatGSDD~tcR  254 (343)
T KOG0286|consen  178 QTQVFHGHTGDVMSLSLSPSDGNTFVSGGCDKSAKLWDVRSGQ--CVQTFEGHESDINSVRFFP-SGDAFATGSDDATCR  254 (343)
T ss_pred             EEEEecCCcccEEEEecCCCCCCeEEecccccceeeeeccCcc--eeEeecccccccceEEEcc-CCCeeeecCCCceeE
Confidence            9999999999999999999444899999999999999999998  8999999999999999999 999999999999999


Q ss_pred             EEecCCCCCCCCCCceeeecc--CCCCeeEEEEecCCCcEEEEecCCCcEEEEeCCcccccccCCCCCcCCCCceeeeec
Q 021657          163 MFDRRNLTSNGVGSPINKFEG--HSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHA  240 (309)
Q Consensus       163 i~d~~~~~~~~~~~~~~~~~~--~~~~v~~~~~~~~~~~l~~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~  240 (309)
                      +||+|.      .+.+..+..  -..+|++++|+..|+.| .+|..|..+.+||.-+               .+.+..+.
T Consensus       255 lyDlRa------D~~~a~ys~~~~~~gitSv~FS~SGRlL-fagy~d~~c~vWDtlk---------------~e~vg~L~  312 (343)
T KOG0286|consen  255 LYDLRA------DQELAVYSHDSIICGITSVAFSKSGRLL-FAGYDDFTCNVWDTLK---------------GERVGVLA  312 (343)
T ss_pred             EEeecC------CcEEeeeccCcccCCceeEEEcccccEE-EeeecCCceeEeeccc---------------cceEEEee
Confidence            999999      677777753  34679999999999965 4888999999999877               45677888


Q ss_pred             CCCcceeeEEEccCCCeEEEEecCCCCCCCCCCeEEEEE
Q 021657          241 GHRDKVVDFHWNASDPWTVVSVSDDCDSTGGGGTLQIWR  279 (309)
Q Consensus       241 ~~~~~v~~~~~~~~~~~~~~s~s~d~~s~~~dg~v~vw~  279 (309)
                      +|..+|.++..+|+|.-+.        ||++|..++||.
T Consensus       313 GHeNRvScl~~s~DG~av~--------TgSWDs~lriW~  343 (343)
T KOG0286|consen  313 GHENRVSCLGVSPDGMAVA--------TGSWDSTLRIWA  343 (343)
T ss_pred             ccCCeeEEEEECCCCcEEE--------ecchhHheeecC
Confidence            9999999999999887655        777889999994

>KOG0282 consensus mRNA splicing factor [Function unknown]

Probab=100.00  E-value=5.8e-38  Score=240.69  Aligned_cols=243  Identities=24%  Similarity=0.426  Sum_probs=204.4

Q ss_pred             cccCCCCCcceEEEEECC-CCCEEEEecCCCcEEEEeCCccccccccCCccccccCCCCceeecCCCCCCCCcccCCCCC
Q 021657            2 EILTGHQDNAEFALAMCP-TEPYVLSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPS   80 (309)
Q Consensus         2 ~~l~~H~~~~V~~~~~~~-~~~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (309)
                      .++.||+. .|+++.|.| .+.+|++++.|+.|+||++-.                                       .
T Consensus       208 ~~~~gH~k-gvsai~~fp~~~hLlLS~gmD~~vklW~vy~---------------------------------------~  247 (503)
T KOG0282|consen  208 HNLSGHTK-GVSAIQWFPKKGHLLLSGGMDGLVKLWNVYD---------------------------------------D  247 (503)
T ss_pred             eeccCCcc-ccchhhhccceeeEEEecCCCceEEEEEEec---------------------------------------C
Confidence            57899999 799999999 889999999999999999873                                       5


Q ss_pred             cCcccccccccCCeEEEEEecCCCcEEEEEcCCCeEEEEEcCCCCcceEEEeeccCCceeEEEeccCCCCeEEEEcCCCc
Q 021657           81 VGPRGIYNGHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNS  160 (309)
Q Consensus        81 ~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~  160 (309)
                      .++++++.+|..+|.+++|+++| ..|++++.|+.|++||+++++  +...+. ....++|+.|+|++.+.|++|+.|+.
T Consensus       248 ~~~lrtf~gH~k~Vrd~~~s~~g-~~fLS~sfD~~lKlwDtETG~--~~~~f~-~~~~~~cvkf~pd~~n~fl~G~sd~k  323 (503)
T KOG0282|consen  248 RRCLRTFKGHRKPVRDASFNNCG-TSFLSASFDRFLKLWDTETGQ--VLSRFH-LDKVPTCVKFHPDNQNIFLVGGSDKK  323 (503)
T ss_pred             cceehhhhcchhhhhhhhccccC-Ceeeeeecceeeeeeccccce--EEEEEe-cCCCceeeecCCCCCcEEEEecCCCc
Confidence            66788999999999999999999 789999999999999999999  555553 35678999999955599999999999


Q ss_pred             EEEEecCCCCCCCCCCceeeeccCCCCeeEEEEecCCCcEEEEecCCCcEEEEeCCcccccccCCCCC-------c----
Q 021657          161 VRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRT-------T----  229 (309)
Q Consensus       161 i~i~d~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~dg~i~iwd~~~~~~~~~~~~~~-------~----  229 (309)
                      |+.||+|+      ++.++++..|-+.|+.+.|-++|++ +++.++|+.++||+.+..-.........       .    
T Consensus       324 i~~wDiRs------~kvvqeYd~hLg~i~~i~F~~~g~r-FissSDdks~riWe~~~~v~ik~i~~~~~hsmP~~~~~P~  396 (503)
T KOG0282|consen  324 IRQWDIRS------GKVVQEYDRHLGAILDITFVDEGRR-FISSSDDKSVRIWENRIPVPIKNIADPEMHTMPCLTLHPN  396 (503)
T ss_pred             EEEEeccc------hHHHHHHHhhhhheeeeEEccCCce-EeeeccCccEEEEEcCCCccchhhcchhhccCcceecCCC
Confidence            99999999      9999999999999999999999998 5699999999999988733221111000       0    


Q ss_pred             --------------------CCCCceeeeecCCC--cceeeEEEccCCCeEEEEecCCCCCCCCCCeEEEEEccccccCC
Q 021657          230 --------------------NYPAGLFFQHAGHR--DKVVDFHWNASDPWTVVSVSDDCDSTGGGGTLQIWRMSDLIYRP  287 (309)
Q Consensus       230 --------------------~~~~~~~~~~~~~~--~~v~~~~~~~~~~~~~~s~s~d~~s~~~dg~v~vw~~~~~~~~~  287 (309)
                                          ..+......+.+|.  +.-..+.|||++.+|+        +|..||.+.+||.+      
T Consensus       397 ~~~~~aQs~dN~i~ifs~~~~~r~nkkK~feGh~vaGys~~v~fSpDG~~l~--------SGdsdG~v~~wdwk------  462 (503)
T KOG0282|consen  397 GKWFAAQSMDNYIAIFSTVPPFRLNKKKRFEGHSVAGYSCQVDFSPDGRTLC--------SGDSDGKVNFWDWK------  462 (503)
T ss_pred             CCeehhhccCceEEEEecccccccCHhhhhcceeccCceeeEEEcCCCCeEE--------eecCCccEEEeech------
Confidence                                01111223345664  3567899999999877        88888999999999      


Q ss_pred             hhhHhHhhhcccceEEEeeeCC
Q 021657          288 QDEVLAELEKFKAHVISCTSKP  309 (309)
Q Consensus       288 ~~~~~~~~~~h~~~v~~~~~~P  309 (309)
                      +.+.+..++.|.+++..+.|||
T Consensus       463 t~kl~~~lkah~~~ci~v~wHP  484 (503)
T KOG0282|consen  463 TTKLVSKLKAHDQPCIGVDWHP  484 (503)
T ss_pred             hhhhhhccccCCcceEEEEecC
Confidence            8999999999999999999998

>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=4.1e-37  Score=243.29  Aligned_cols=268  Identities=19%  Similarity=0.292  Sum_probs=224.7

Q ss_pred             cccCCCCCcceEEEEECCCCCEEEEecCCCcEEEEeCCccccccccCCcccc--ccCCCCceeecCCCCCCCCcccCCCC
Q 021657            2 EILTGHQDNAEFALAMCPTEPYVLSGGKDKSVVLWSIQDHITSSATDPATAK--SAGSSGSIIKQSPKPGDGNDKAADGP   79 (309)
Q Consensus         2 ~~l~~H~~~~V~~~~~~~~~~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~   79 (309)
                      +++..|.+ .|.++.|+|...+++++-..|.|.|||.++......+......  ....-....-+..++.+..+++++..
T Consensus         7 rk~~~rSd-RVKsVd~HPtePw~la~LynG~V~IWnyetqtmVksfeV~~~PvRa~kfiaRknWiv~GsDD~~IrVfnyn   85 (794)
T KOG0276|consen    7 RKFQSRSD-RVKSVDFHPTEPWILAALYNGDVQIWNYETQTMVKSFEVSEVPVRAAKFIARKNWIVTGSDDMQIRVFNYN   85 (794)
T ss_pred             hHhhccCC-ceeeeecCCCCceEEEeeecCeeEEEecccceeeeeeeecccchhhheeeeccceEEEecCCceEEEEecc
Confidence            45667888 8999999999999999999999999999987444333322211  11111122234457789999999999


Q ss_pred             CcCcccccccccCCeEEEEEecCCCcEEEEEcCCCeEEEEEcCCCCcceEEEeeccCCceeEEEeccCCCCeEEEEcCCC
Q 021657           80 SVGPRGIYNGHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADN  159 (309)
Q Consensus        80 ~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg  159 (309)
                      +.+.+..+..|..-|.+++.+|.. .+++++++|-+|++||.+.. ..+.+.+.+|..-|++++|+|.+.+.|++++.|+
T Consensus        86 t~ekV~~FeAH~DyIR~iavHPt~-P~vLtsSDDm~iKlW~we~~-wa~~qtfeGH~HyVMqv~fnPkD~ntFaS~sLDr  163 (794)
T KOG0276|consen   86 TGEKVKTFEAHSDYIRSIAVHPTL-PYVLTSSDDMTIKLWDWENE-WACEQTFEGHEHYVMQVAFNPKDPNTFASASLDR  163 (794)
T ss_pred             cceeeEEeeccccceeeeeecCCC-CeEEecCCccEEEEeeccCc-eeeeeEEcCcceEEEEEEecCCCccceeeeeccc
Confidence            999999999999999999999998 78999999999999999644 4578899999999999999999999999999999


Q ss_pred             cEEEEecCCCCCCCCCCceeeeccCCCCeeEEEEecCC--CcEEEEecCCCcEEEEeCCcccccccCCCCCcCCCCceee
Q 021657          160 SVRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWSPDK--SSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFF  237 (309)
Q Consensus       160 ~i~i~d~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~--~~l~~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~  237 (309)
                      +|++|.+.+      ..+..++++|...|+++.+-+-|  ++| ++|++|.+++|||..+               ..++.
T Consensus       164 TVKVWslgs------~~~nfTl~gHekGVN~Vdyy~~gdkpyl-IsgaDD~tiKvWDyQt---------------k~CV~  221 (794)
T KOG0276|consen  164 TVKVWSLGS------PHPNFTLEGHEKGVNCVDYYTGGDKPYL-ISGADDLTIKVWDYQT---------------KSCVQ  221 (794)
T ss_pred             cEEEEEcCC------CCCceeeeccccCcceEEeccCCCcceE-EecCCCceEEEeecch---------------HHHHH
Confidence            999999998      78889999999999999998744  665 5999999999999998               67888


Q ss_pred             eecCCCcceeeEEEccCCCeEEEEecCCCCCCCCCCeEEEEEccccccCChhhHhHhhhcccceEEEeeeC
Q 021657          238 QHAGHRDKVVDFHWNASDPWTVVSVSDDCDSTGGGGTLQIWRMSDLIYRPQDEVLAELEKFKAHVISCTSK  308 (309)
Q Consensus       238 ~~~~~~~~v~~~~~~~~~~~~~~s~s~d~~s~~~dg~v~vw~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~  308 (309)
                      ++.||...|..+.|+|.-+.++        ||+.||+++||+..      +-+...++.---++|++++-.
T Consensus       222 TLeGHt~Nvs~v~fhp~lpiii--------sgsEDGTvriWhs~------Ty~lE~tLn~gleRvW~I~~~  278 (794)
T KOG0276|consen  222 TLEGHTNNVSFVFFHPELPIII--------SGSEDGTVRIWNSK------TYKLEKTLNYGLERVWCIAAH  278 (794)
T ss_pred             HhhcccccceEEEecCCCcEEE--------EecCCccEEEecCc------ceehhhhhhcCCceEEEEeec
Confidence            9999999999999999888655        66666999999998      566666676666788888743

>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]

Probab=100.00  E-value=3.5e-36  Score=230.36  Aligned_cols=245  Identities=22%  Similarity=0.402  Sum_probs=208.0

Q ss_pred             cccCCCCCcceEEEEECCCCCEEEEecCCCcEEEEeCCccccccccCCccccccCCCC-ceeecCCCCCCCCcccCCCCC
Q 021657            2 EILTGHQDNAEFALAMCPTEPYVLSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSG-SIIKQSPKPGDGNDKAADGPS   80 (309)
Q Consensus         2 ~~l~~H~~~~V~~~~~~~~~~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~   80 (309)
                      .+|.-|++ +|.++.|+.+|.||++++.||++.+||..++.....+........+... ....+.....++.+.++.+..
T Consensus       270 ~tl~~Hkg-PI~slKWnk~G~yilS~~vD~ttilwd~~~g~~~q~f~~~s~~~lDVdW~~~~~F~ts~td~~i~V~kv~~  348 (524)
T KOG0273|consen  270 STLGQHKG-PIFSLKWNKKGTYILSGGVDGTTILWDAHTGTVKQQFEFHSAPALDVDWQSNDEFATSSTDGCIHVCKVGE  348 (524)
T ss_pred             hhhhccCC-ceEEEEEcCCCCEEEeccCCccEEEEeccCceEEEeeeeccCCccceEEecCceEeecCCCceEEEEEecC
Confidence            46778999 9999999999999999999999999999888666666554444332222 233455556678899999999


Q ss_pred             cCcccccccccCCeEEEEEecCCCcEEEEEcCCCeEEEEEcCCCCcceEEEeeccCCceeEEEeccC--------CCCeE
Q 021657           81 VGPRGIYNGHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPL--------DDNLI  152 (309)
Q Consensus        81 ~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~--------~~~~l  152 (309)
                      .+|+.++.+|.++|.++.|+|.+ .+|++++.|++++||+.....  ....+.+|...|+.+.|+|.        .+..+
T Consensus       349 ~~P~~t~~GH~g~V~alk~n~tg-~LLaS~SdD~TlkiWs~~~~~--~~~~l~~Hskei~t~~wsp~g~v~~n~~~~~~l  425 (524)
T KOG0273|consen  349 DRPVKTFIGHHGEVNALKWNPTG-SLLASCSDDGTLKIWSMGQSN--SVHDLQAHSKEIYTIKWSPTGPVTSNPNMNLML  425 (524)
T ss_pred             CCcceeeecccCceEEEEECCCC-ceEEEecCCCeeEeeecCCCc--chhhhhhhccceeeEeecCCCCccCCCcCCceE
Confidence            99999999999999999999999 899999999999999987766  78889999999999999983        24589


Q ss_pred             EEEcCCCcEEEEecCCCCCCCCCCceeeeccCCCCeeEEEEecCCCcEEEEecCCCcEEEEeCCcccccccCCCCCcCCC
Q 021657          153 LTGSADNSVRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYP  232 (309)
Q Consensus       153 ~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~  232 (309)
                      ++++.|++|++||+..      +.++..|..|..+|.+++|+|+|++ +|+|+.||.|.+|+++.               
T Consensus       426 ~sas~dstV~lwdv~~------gv~i~~f~kH~~pVysvafS~~g~y-lAsGs~dg~V~iws~~~---------------  483 (524)
T KOG0273|consen  426 ASASFDSTVKLWDVES------GVPIHTLMKHQEPVYSVAFSPNGRY-LASGSLDGCVHIWSTKT---------------  483 (524)
T ss_pred             EEeecCCeEEEEEccC------CceeEeeccCCCceEEEEecCCCcE-EEecCCCCeeEeccccc---------------
Confidence            9999999999999999      9999999999999999999999997 68999999999999998               


Q ss_pred             CceeeeecCCCcceeeEEEccCCCeEEEEecCCCCCCCCCCeEEEEEcc
Q 021657          233 AGLFFQHAGHRDKVVDFHWNASDPWTVVSVSDDCDSTGGGGTLQIWRMS  281 (309)
Q Consensus       233 ~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~s~d~~s~~~dg~v~vw~~~  281 (309)
                      .+++..+. -...|..+.|+.+|.++.++.++        +.+++-|++
T Consensus       484 ~~l~~s~~-~~~~Ifel~Wn~~G~kl~~~~sd--------~~vcvldlr  523 (524)
T KOG0273|consen  484 GKLVKSYQ-GTGGIFELCWNAAGDKLGACASD--------GSVCVLDLR  523 (524)
T ss_pred             hheeEeec-CCCeEEEEEEcCCCCEEEEEecC--------CCceEEEec
Confidence            33444444 45669999999999988866655        789998875

>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]

Probab=100.00  E-value=6.8e-36  Score=211.27  Aligned_cols=229  Identities=16%  Similarity=0.332  Sum_probs=190.4

Q ss_pred             CCCcceEEEEECCCCCEEEEecCCCcEEEEeCCccccccccCCccccccCCCCceeecCCCCCCCCcccCCCCCcCcccc
Q 021657            7 HQDNAEFALAMCPTEPYVLSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGI   86 (309)
Q Consensus         7 H~~~~V~~~~~~~~~~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   86 (309)
                      |.++.|+.+++.|+++.||+++. -.||+||+.+.                                      +..++..
T Consensus        38 h~dsqVNrLeiTpdk~~LAaa~~-qhvRlyD~~S~--------------------------------------np~Pv~t   78 (311)
T KOG0315|consen   38 HPDSQVNRLEITPDKKDLAAAGN-QHVRLYDLNSN--------------------------------------NPNPVAT   78 (311)
T ss_pred             cCccceeeEEEcCCcchhhhccC-CeeEEEEccCC--------------------------------------CCCceeE
Confidence            66668999999999999998875 58999999853                                      3447889


Q ss_pred             cccccCCeEEEEEecCCCcEEEEEcCCCeEEEEEcCCCCcceEEEeeccCCceeEEEeccCCCCeEEEEcCCCcEEEEec
Q 021657           87 YNGHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDR  166 (309)
Q Consensus        87 ~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~  166 (309)
                      +.+|+..|+.+.|..+| +.+++|++||+++|||++...   ......|..+|+++..+| +...|++|..+|.|++||+
T Consensus        79 ~e~h~kNVtaVgF~~dg-rWMyTgseDgt~kIWdlR~~~---~qR~~~~~spVn~vvlhp-nQteLis~dqsg~irvWDl  153 (311)
T KOG0315|consen   79 FEGHTKNVTAVGFQCDG-RWMYTGSEDGTVKIWDLRSLS---CQRNYQHNSPVNTVVLHP-NQTELISGDQSGNIRVWDL  153 (311)
T ss_pred             EeccCCceEEEEEeecC-eEEEecCCCceEEEEeccCcc---cchhccCCCCcceEEecC-CcceEEeecCCCcEEEEEc
Confidence            99999999999999999 999999999999999999855   444456789999999999 9999999999999999999


Q ss_pred             CCCCCCCCCCceeeec-cCCCCeeEEEEecCCCcEEEEecCCCcEEEEeCCcccccccCCCCCcCCCCceeeeecCCCcc
Q 021657          167 RNLTSNGVGSPINKFE-GHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDK  245 (309)
Q Consensus       167 ~~~~~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~l~~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  245 (309)
                      ++      ..+...+. .....|.++...|||.. ++++..-|.+++|++-. .+.        ..+..++.+++.|+..
T Consensus       154 ~~------~~c~~~liPe~~~~i~sl~v~~dgsm-l~a~nnkG~cyvW~l~~-~~~--------~s~l~P~~k~~ah~~~  217 (311)
T KOG0315|consen  154 GE------NSCTHELIPEDDTSIQSLTVMPDGSM-LAAANNKGNCYVWRLLN-HQT--------ASELEPVHKFQAHNGH  217 (311)
T ss_pred             cC------CccccccCCCCCcceeeEEEcCCCcE-EEEecCCccEEEEEccC-CCc--------cccceEhhheecccce
Confidence            98      44444432 33568999999999996 56788889999999977 221        1235677789999999


Q ss_pred             eeeEEEccCCCeEEEEecCCCCCCCCCCeEEEEEccccccCChhhHhHhhhcccceEEEeeeC
Q 021657          246 VVDFHWNASDPWTVVSVSDDCDSTGGGGTLQIWRMSDLIYRPQDEVLAELEKFKAHVISCTSK  308 (309)
Q Consensus       246 v~~~~~~~~~~~~~~s~s~d~~s~~~dg~v~vw~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~  308 (309)
                      +..+.+||++.+|+        +++.|.+++||+++++     .+....+++|+..+++++|+
T Consensus       218 il~C~lSPd~k~la--------t~ssdktv~iwn~~~~-----~kle~~l~gh~rWvWdc~FS  267 (311)
T KOG0315|consen  218 ILRCLLSPDVKYLA--------TCSSDKTVKIWNTDDF-----FKLELVLTGHQRWVWDCAFS  267 (311)
T ss_pred             EEEEEECCCCcEEE--------eecCCceEEEEecCCc-----eeeEEEeecCCceEEeeeec
Confidence            99999999887655        5556699999999953     24556789999999999997

>KOG0295 consensus WD40 repeat-containing protein [Function unknown]

Probab=100.00  E-value=3.8e-36  Score=223.16  Aligned_cols=245  Identities=20%  Similarity=0.324  Sum_probs=206.9

Q ss_pred             cccCCCCCcceEEEEECCCCCEEEEecCCCcEEEEeCCcccc---ccccCCccccccCCCCceeecCCCCCCCCcccCCC
Q 021657            2 EILTGHQDNAEFALAMCPTEPYVLSGGKDKSVVLWSIQDHIT---SSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADG   78 (309)
Q Consensus         2 ~~l~~H~~~~V~~~~~~~~~~~l~t~~~dg~i~vwd~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   78 (309)
                      +.|+||++ .|..++|+..|++|++++.|=.+++||.++...   ..............-.....+.....+..++.|+.
T Consensus       144 ~~LrGHt~-sv~di~~~a~Gk~l~tcSsDl~~~LWd~~~~~~c~ks~~gh~h~vS~V~f~P~gd~ilS~srD~tik~We~  222 (406)
T KOG0295|consen  144 RSLRGHTD-SVFDISFDASGKYLATCSSDLSAKLWDFDTFFRCIKSLIGHEHGVSSVFFLPLGDHILSCSRDNTIKAWEC  222 (406)
T ss_pred             hhhhcccc-ceeEEEEecCccEEEecCCccchhheeHHHHHHHHHHhcCcccceeeEEEEecCCeeeecccccceeEEec
Confidence            57999999 799999999999999999999999999987411   11111111111111111244555667889999999


Q ss_pred             CCcCcccccccccCCeEEEEEecCCCcEEEEEcCCCeEEEEEcCCCCcceEEEeeccCCceeEEEeccC-----------
Q 021657           79 PSVGPRGIYNGHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPL-----------  147 (309)
Q Consensus        79 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~-----------  147 (309)
                      .++.++.++.+|...|..++.+.|| .++++|+.|.+|++|-+.+.+  +...+..|.-+|-|++|.|.           
T Consensus       223 ~tg~cv~t~~~h~ewvr~v~v~~DG-ti~As~s~dqtl~vW~~~t~~--~k~~lR~hEh~vEci~wap~~~~~~i~~at~  299 (406)
T KOG0295|consen  223 DTGYCVKTFPGHSEWVRMVRVNQDG-TIIASCSNDQTLRVWVVATKQ--CKAELREHEHPVECIAWAPESSYPSISEATG  299 (406)
T ss_pred             ccceeEEeccCchHhEEEEEecCCe-eEEEecCCCceEEEEEeccch--hhhhhhccccceEEEEecccccCcchhhccC
Confidence            9999999999999999999999999 999999999999999998887  56777889999999999772           


Q ss_pred             ---CCCeEEEEcCCCcEEEEecCCCCCCCCCCceeeeccCCCCeeEEEEecCCCcEEEEecCCCcEEEEeCCcccccccC
Q 021657          148 ---DDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQ  224 (309)
Q Consensus       148 ---~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~dg~i~iwd~~~~~~~~~~  224 (309)
                         .++++.+++.|++|++||+.+      +.++.++.+|...|..++|+|.|+|| +++.+|+++++||+++       
T Consensus       300 ~~~~~~~l~s~SrDktIk~wdv~t------g~cL~tL~ghdnwVr~~af~p~Gkyi-~ScaDDktlrvwdl~~-------  365 (406)
T KOG0295|consen  300 STNGGQVLGSGSRDKTIKIWDVST------GMCLFTLVGHDNWVRGVAFSPGGKYI-LSCADDKTLRVWDLKN-------  365 (406)
T ss_pred             CCCCccEEEeecccceEEEEeccC------CeEEEEEecccceeeeeEEcCCCeEE-EEEecCCcEEEEEecc-------
Confidence               236999999999999999999      99999999999999999999999985 5999999999999998       


Q ss_pred             CCCCcCCCCceeeeecCCCcceeeEEEccCCCeEEEEecCCCCCCCCCCeEEEEEc
Q 021657          225 GPRTTNYPAGLFFQHAGHRDKVVDFHWNASDPWTVVSVSDDCDSTGGGGTLQIWRM  280 (309)
Q Consensus       225 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~s~d~~s~~~dg~v~vw~~  280 (309)
                              .++...+..|..-++++.|+.+.++++        ||+-|.++++|..
T Consensus       366 --------~~cmk~~~ah~hfvt~lDfh~~~p~Vv--------TGsVdqt~KvwEc  405 (406)
T KOG0295|consen  366 --------LQCMKTLEAHEHFVTSLDFHKTAPYVV--------TGSVDQTVKVWEC  405 (406)
T ss_pred             --------ceeeeccCCCcceeEEEecCCCCceEE--------eccccceeeeeec
Confidence                    667778889999999999999988766        7778899999974

>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]

Probab=100.00  E-value=3.9e-35  Score=241.77  Aligned_cols=225  Identities=25%  Similarity=0.461  Sum_probs=189.3

Q ss_pred             ccCCCCCcceEEEEECCCCCEEEEecCCCcEEEEeCCccccccccCCccccccCCCCceeecCCCCCCCCcccCCCCCcC
Q 021657            3 ILTGHQDNAEFALAMCPTEPYVLSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVG   82 (309)
Q Consensus         3 ~l~~H~~~~V~~~~~~~~~~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   82 (309)
                      .+.+|....|.++.|+++|++|++++.|+.+++|+......                                      .
T Consensus       153 ~~~~~~~~sv~~~~fs~~g~~l~~~~~~~~i~~~~~~~~~~--------------------------------------~  194 (456)
T KOG0266|consen  153 TLAGHECPSVTCVDFSPDGRALAAASSDGLIRIWKLEGIKS--------------------------------------N  194 (456)
T ss_pred             eecccccCceEEEEEcCCCCeEEEccCCCcEEEeecccccc--------------------------------------h
Confidence            45566445899999999999999999999999999853210                                      1


Q ss_pred             cccccccccCCeEEEEEecCCCcEEEEEcCCCeEEEEEcCCCCcceEEEeeccCCceeEEEeccCCCCeEEEEcCCCcEE
Q 021657           83 PRGIYNGHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVR  162 (309)
Q Consensus        83 ~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~  162 (309)
                      ....+.+|...|.+++|+|++ .++++++.|++|+|||+.... ..++.+.+|...|++++|+| .++++++|+.|++|+
T Consensus       195 ~~~~l~~h~~~v~~~~fs~d~-~~l~s~s~D~tiriwd~~~~~-~~~~~l~gH~~~v~~~~f~p-~g~~i~Sgs~D~tvr  271 (456)
T KOG0266|consen  195 LLRELSGHTRGVSDVAFSPDG-SYLLSGSDDKTLRIWDLKDDG-RNLKTLKGHSTYVTSVAFSP-DGNLLVSGSDDGTVR  271 (456)
T ss_pred             hhccccccccceeeeEECCCC-cEEEEecCCceEEEeeccCCC-eEEEEecCCCCceEEEEecC-CCCEEEEecCCCcEE
Confidence            344557899999999999999 799999999999999994432 27888999999999999999 789999999999999


Q ss_pred             EEecCCCCCCCCCCceeeeccCCCCeeEEEEecCCCcEEEEecCCCcEEEEeCCcccccccCCCCCcCCCCceeeeecCC
Q 021657          163 MFDRRNLTSNGVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGH  242 (309)
Q Consensus       163 i~d~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~  242 (309)
                      |||+++      ++++..+.+|...|++++|++++.. +++++.|+.|++||+.+....             +...+.++
T Consensus       272 iWd~~~------~~~~~~l~~hs~~is~~~f~~d~~~-l~s~s~d~~i~vwd~~~~~~~-------------~~~~~~~~  331 (456)
T KOG0266|consen  272 IWDVRT------GECVRKLKGHSDGISGLAFSPDGNL-LVSASYDGTIRVWDLETGSKL-------------CLKLLSGA  331 (456)
T ss_pred             EEeccC------CeEEEeeeccCCceEEEEECCCCCE-EEEcCCCccEEEEECCCCcee-------------eeecccCC
Confidence            999999      8999999999999999999999996 568899999999999982210             23344444


Q ss_pred             Cc--ceeeEEEccCCCeEEEEecCCCCCCCCCCeEEEEEccccccCChhhHhHhhhcccceE
Q 021657          243 RD--KVVDFHWNASDPWTVVSVSDDCDSTGGGGTLQIWRMSDLIYRPQDEVLAELEKFKAHV  302 (309)
Q Consensus       243 ~~--~v~~~~~~~~~~~~~~s~s~d~~s~~~dg~v~vw~~~~~~~~~~~~~~~~~~~h~~~v  302 (309)
                      ..  +++.+.|+|++.+++        ++..|+.+++||+.      ...++.++.+|...+
T Consensus       332 ~~~~~~~~~~fsp~~~~ll--------~~~~d~~~~~w~l~------~~~~~~~~~~~~~~~  379 (456)
T KOG0266|consen  332 ENSAPVTSVQFSPNGKYLL--------SASLDRTLKLWDLR------SGKSVGTYTGHSNLV  379 (456)
T ss_pred             CCCCceeEEEECCCCcEEE--------EecCCCeEEEEEcc------CCcceeeecccCCcc
Confidence            44  599999999988877        66666999999999      678888888887754

>PTZ00421 coronin; Provisional

Probab=100.00  E-value=1.3e-34  Score=237.75  Aligned_cols=237  Identities=19%  Similarity=0.361  Sum_probs=180.9

Q ss_pred             ccCCCCCcceEEEEECC-CCCEEEEecCCCcEEEEeCCccccccccCCccccccCCCCceeecCCCCCCCCcccCCCCCc
Q 021657            3 ILTGHQDNAEFALAMCP-TEPYVLSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSV   81 (309)
Q Consensus         3 ~l~~H~~~~V~~~~~~~-~~~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (309)
                      .|.||.+ .|++++|+| ++++|++|+.|++|++||+.+.....                                 ...
T Consensus        70 ~l~GH~~-~V~~v~fsP~d~~~LaSgS~DgtIkIWdi~~~~~~~---------------------------------~~~  115 (493)
T PTZ00421         70 ILLGQEG-PIIDVAFNPFDPQKLFTASEDGTIMGWGIPEEGLTQ---------------------------------NIS  115 (493)
T ss_pred             eEeCCCC-CEEEEEEcCCCCCEEEEEeCCCEEEEEecCCCcccc---------------------------------ccC
Confidence            4789999 899999999 88999999999999999997431100                                 012


Q ss_pred             CcccccccccCCeEEEEEecCCCcEEEEEcCCCeEEEEEcCCCCcceEEEeeccCCceeEEEeccCCCCeEEEEcCCCcE
Q 021657           82 GPRGIYNGHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSV  161 (309)
Q Consensus        82 ~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i  161 (309)
                      .++..+.+|...|.+++|+|++..+|++++.|+.|+|||+++++  ....+..|...|.+++|+| ++.+|++++.|+.|
T Consensus       116 ~~l~~L~gH~~~V~~l~f~P~~~~iLaSgs~DgtVrIWDl~tg~--~~~~l~~h~~~V~sla~sp-dG~lLatgs~Dg~I  192 (493)
T PTZ00421        116 DPIVHLQGHTKKVGIVSFHPSAMNVLASAGADMVVNVWDVERGK--AVEVIKCHSDQITSLEWNL-DGSLLCTTSKDKKL  192 (493)
T ss_pred             cceEEecCCCCcEEEEEeCcCCCCEEEEEeCCCEEEEEECCCCe--EEEEEcCCCCceEEEEEEC-CCCEEEEecCCCEE
Confidence            34566789999999999999876789999999999999999887  6777888999999999999 99999999999999


Q ss_pred             EEEecCCCCCCCCCCceeeeccCCCC-eeEEEEecCCCcEEEEe---cCCCcEEEEeCCcccccccCCCCCcCCCCceee
Q 021657          162 RMFDRRNLTSNGVGSPINKFEGHSAA-VLCVQWSPDKSSVFGSS---AEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFF  237 (309)
Q Consensus       162 ~i~d~~~~~~~~~~~~~~~~~~~~~~-v~~~~~~~~~~~l~~~~---~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~  237 (309)
                      ++||+++      ++.+..+.+|.+. +..+.|.+++..++++|   +.|+.|++||+++.....              .
T Consensus       193 rIwD~rs------g~~v~tl~~H~~~~~~~~~w~~~~~~ivt~G~s~s~Dr~VklWDlr~~~~p~--------------~  252 (493)
T PTZ00421        193 NIIDPRD------GTIVSSVEAHASAKSQRCLWAKRKDLIITLGCSKSQQRQIMLWDTRKMASPY--------------S  252 (493)
T ss_pred             EEEECCC------CcEEEEEecCCCCcceEEEEcCCCCeEEEEecCCCCCCeEEEEeCCCCCCce--------------e
Confidence            9999998      8888888888764 45678999888666544   358999999998743321              1


Q ss_pred             eec-CCCcceeeEEEccCCCeEEEEecCCCCCCCCCCeEEEEEccccccCChhhHhHhhhc-ccceEEEeeeCC
Q 021657          238 QHA-GHRDKVVDFHWNASDPWTVVSVSDDCDSTGGGGTLQIWRMSDLIYRPQDEVLAELEK-FKAHVISCTSKP  309 (309)
Q Consensus       238 ~~~-~~~~~v~~~~~~~~~~~~~~s~s~d~~s~~~dg~v~vw~~~~~~~~~~~~~~~~~~~-h~~~v~~~~~~P  309 (309)
                      ... .+...+....|++++..+++++..       |+.|++||+.      +++++...+. +..++..++|.|
T Consensus       253 ~~~~d~~~~~~~~~~d~d~~~L~lggkg-------Dg~Iriwdl~------~~~~~~~~~~~s~~~~~g~~~~p  313 (493)
T PTZ00421        253 TVDLDQSSALFIPFFDEDTNLLYIGSKG-------EGNIRCFELM------NERLTFCSSYSSVEPHKGLCMMP  313 (493)
T ss_pred             EeccCCCCceEEEEEcCCCCEEEEEEeC-------CCeEEEEEee------CCceEEEeeccCCCCCcceEecc
Confidence            122 223455667789988877753333       4999999998      3444333322 334555665554

>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto

Probab=100.00  E-value=1.1e-34  Score=227.95  Aligned_cols=266  Identities=22%  Similarity=0.417  Sum_probs=212.9

Q ss_pred             CcccCCCCCcceEEEEECCCCCEEEEecCCCcEEEEeCCccccccccCC--cc--ccccCCCCceeecCCCCCCCCcccC
Q 021657            1 MEILTGHQDNAEFALAMCPTEPYVLSGGKDKSVVLWSIQDHITSSATDP--AT--AKSAGSSGSIIKQSPKPGDGNDKAA   76 (309)
Q Consensus         1 l~~l~~H~~~~V~~~~~~~~~~~l~t~~~dg~i~vwd~~~~~~~~~~~~--~~--~~~~~~~~~~~~~~~~~~~~~~~~~   76 (309)
                      +++|++|.+ +|++++|+|++++|++++.||.|++|++.+.........  ..  ........  ..+..+..++.+.+|
T Consensus         2 ~~~~~~h~~-~i~~~~~~~~~~~l~~~~~~g~i~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~--~~l~~~~~~~~i~i~   78 (289)
T cd00200           2 RRTLKGHTG-GVTCVAFSPDGKLLATGSGDGTIKVWDLETGELLRTLKGHTGPVRDVAASADG--TYLASGSSDKTIRLW   78 (289)
T ss_pred             chHhcccCC-CEEEEEEcCCCCEEEEeecCcEEEEEEeeCCCcEEEEecCCcceeEEEECCCC--CEEEEEcCCCeEEEE
Confidence            467899998 899999999999999999999999999986532111111  11  11111111  122333447889999


Q ss_pred             CCCCcCcccccccccCCeEEEEEecCCCcEEEEEcCCCeEEEEEcCCCCcceEEEeeccCCceeEEEeccCCCCeEEEEc
Q 021657           77 DGPSVGPRGIYNGHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGS  156 (309)
Q Consensus        77 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~  156 (309)
                      +....+....+..|...|.++.|++++ .++++++.||.|.+||+++.+  ....+..|...+.+++|+| ++.++++++
T Consensus        79 ~~~~~~~~~~~~~~~~~i~~~~~~~~~-~~~~~~~~~~~i~~~~~~~~~--~~~~~~~~~~~i~~~~~~~-~~~~l~~~~  154 (289)
T cd00200          79 DLETGECVRTLTGHTSYVSSVAFSPDG-RILSSSSRDKTIKVWDVETGK--CLTTLRGHTDWVNSVAFSP-DGTFVASSS  154 (289)
T ss_pred             EcCcccceEEEeccCCcEEEEEEcCCC-CEEEEecCCCeEEEEECCCcE--EEEEeccCCCcEEEEEEcC-cCCEEEEEc
Confidence            999888888888999999999999986 788888889999999998766  5666778889999999999 788888888


Q ss_pred             CCCcEEEEecCCCCCCCCCCceeeeccCCCCeeEEEEecCCCcEEEEecCCCcEEEEeCCcccccccCCCCCcCCCCcee
Q 021657          157 ADNSVRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLF  236 (309)
Q Consensus       157 ~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~  236 (309)
                      .|+.|++||++.      .+.+..+..+...+.+++|+|+++.+ ++++.|+.+++||++.               ...+
T Consensus       155 ~~~~i~i~d~~~------~~~~~~~~~~~~~i~~~~~~~~~~~l-~~~~~~~~i~i~d~~~---------------~~~~  212 (289)
T cd00200         155 QDGTIKLWDLRT------GKCVATLTGHTGEVNSVAFSPDGEKL-LSSSSDGTIKLWDLST---------------GKCL  212 (289)
T ss_pred             CCCcEEEEEccc------cccceeEecCccccceEEECCCcCEE-EEecCCCcEEEEECCC---------------Ccee
Confidence            899999999998      77888888888899999999999865 5777799999999987               2334


Q ss_pred             eeecCCCcceeeEEEccCCCeEEEEecCCCCCCCCCCeEEEEEccccccCChhhHhHhhhcccceEEEeeeCC
Q 021657          237 FQHAGHRDKVVDFHWNASDPWTVVSVSDDCDSTGGGGTLQIWRMSDLIYRPQDEVLAELEKFKAHVISCTSKP  309 (309)
Q Consensus       237 ~~~~~~~~~v~~~~~~~~~~~~~~s~s~d~~s~~~dg~v~vw~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~P  309 (309)
                      ..+..|...+.++.|+|++ .++++++.       ||.|++|++.      ..+++..+..|...|.+++|+|
T Consensus       213 ~~~~~~~~~i~~~~~~~~~-~~~~~~~~-------~~~i~i~~~~------~~~~~~~~~~~~~~i~~~~~~~  271 (289)
T cd00200         213 GTLRGHENGVNSVAFSPDG-YLLASGSE-------DGTIRVWDLR------TGECVQTLSGHTNSVTSLAWSP  271 (289)
T ss_pred             cchhhcCCceEEEEEcCCC-cEEEEEcC-------CCcEEEEEcC------CceeEEEccccCCcEEEEEECC
Confidence            4555788899999999984 45654444       4999999998      5677777888999999999986

>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]

Probab=100.00  E-value=6.6e-36  Score=221.22  Aligned_cols=254  Identities=17%  Similarity=0.313  Sum_probs=203.6

Q ss_pred             ceEEEEECCCCCEEEEecCCCcEEEEeCCccccccccCC--ccccccCCCCceeecCCCCCCCCcccCCCCCcCcccccc
Q 021657           11 AEFALAMCPTEPYVLSGGKDKSVVLWSIQDHITSSATDP--ATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYN   88 (309)
Q Consensus        11 ~V~~~~~~~~~~~l~t~~~dg~i~vwd~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   88 (309)
                      .|+|+.+  |...+++|..|++|+|||..+..+......  ....+....  ...+..++.+..+++|+..+++++.++.
T Consensus       199 gVYClQY--DD~kiVSGlrDnTikiWD~n~~~c~~~L~GHtGSVLCLqyd--~rviisGSSDsTvrvWDv~tge~l~tli  274 (499)
T KOG0281|consen  199 GVYCLQY--DDEKIVSGLRDNTIKIWDKNSLECLKILTGHTGSVLCLQYD--ERVIVSGSSDSTVRVWDVNTGEPLNTLI  274 (499)
T ss_pred             ceEEEEe--cchhhhcccccCceEEeccccHHHHHhhhcCCCcEEeeecc--ceEEEecCCCceEEEEeccCCchhhHHh
Confidence            4788888  456788899999999999887643332221  111222211  1255667788888899999999999999


Q ss_pred             cccCCeEEEEEecCCCcEEEEEcCCCeEEEEEcCCCCc-ceEEEeeccCCceeEEEeccCCCCeEEEEcCCCcEEEEecC
Q 021657           89 GHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTS-PVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRR  167 (309)
Q Consensus        89 ~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~-~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~  167 (309)
                      .|...|..+.|+.   .++++++.|.++.+||+..... .....+.+|...|+.+.|+   .+++++++.|.+|++|++.
T Consensus       275 hHceaVLhlrf~n---g~mvtcSkDrsiaVWdm~sps~it~rrVLvGHrAaVNvVdfd---~kyIVsASgDRTikvW~~s  348 (499)
T KOG0281|consen  275 HHCEAVLHLRFSN---GYMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDFD---DKYIVSASGDRTIKVWSTS  348 (499)
T ss_pred             hhcceeEEEEEeC---CEEEEecCCceeEEEeccCchHHHHHHHHhhhhhheeeeccc---cceEEEecCCceEEEEecc
Confidence            9999999999975   4799999999999999976541 2345678999999999995   5799999999999999999


Q ss_pred             CCCCCCCCCceeeeccCCCCeeEEEEecCCCcEEEEecCCCcEEEEeCCcccccccCCCCCcCCCCceeeeecCCCccee
Q 021657          168 NLTSNGVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKVV  247 (309)
Q Consensus       168 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~  247 (309)
                      +      ...++++.+|+..|.|+.+.  ++ ++++|+.|.+|++||+..               +.++..+.||..-|.
T Consensus       349 t------~efvRtl~gHkRGIAClQYr--~r-lvVSGSSDntIRlwdi~~---------------G~cLRvLeGHEeLvR  404 (499)
T KOG0281|consen  349 T------CEFVRTLNGHKRGIACLQYR--DR-LVVSGSSDNTIRLWDIEC---------------GACLRVLEGHEELVR  404 (499)
T ss_pred             c------eeeehhhhcccccceehhcc--Ce-EEEecCCCceEEEEeccc---------------cHHHHHHhchHHhhh
Confidence            9      99999999999999887764  55 678999999999999998               667788999999999


Q ss_pred             eEEEccCCCeEEEEecCCCCCCCCCCeEEEEEccccccC---ChhhHhHhhhcccceEEEeeeC
Q 021657          248 DFHWNASDPWTVVSVSDDCDSTGGGGTLQIWRMSDLIYR---PQDEVLAELEKFKAHVISCTSK  308 (309)
Q Consensus       248 ~~~~~~~~~~~~~s~s~d~~s~~~dg~v~vw~~~~~~~~---~~~~~~~~~~~h~~~v~~~~~~  308 (309)
                      ++.|..  ..++        +|+.||+|++||+......   ...-|+.++..|.+.|..+.|.
T Consensus       405 ciRFd~--krIV--------SGaYDGkikvWdl~aaldpra~~~~~Cl~~lv~hsgRVFrLQFD  458 (499)
T KOG0281|consen  405 CIRFDN--KRIV--------SGAYDGKIKVWDLQAALDPRAPASTLCLRTLVEHSGRVFRLQFD  458 (499)
T ss_pred             heeecC--ceee--------eccccceEEEEecccccCCcccccchHHHhhhhccceeEEEeec
Confidence            999974  4455        7777799999999854322   2334788899999999999884

>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=9.8e-35  Score=238.28  Aligned_cols=235  Identities=21%  Similarity=0.392  Sum_probs=199.6

Q ss_pred             cccCCCCCcceEEEEECCCCCEEEEecCCCcEEEEeCCccccccccCCccccccCCCCceeecCCCCCCCCcccCCCCCc
Q 021657            2 EILTGHQDNAEFALAMCPTEPYVLSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSV   81 (309)
Q Consensus         2 ~~l~~H~~~~V~~~~~~~~~~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (309)
                      ..+.+|.+ +|..++|+|++.++++|+.|..|+||+.+                                        +.
T Consensus        45 ~rFdeHdG-pVRgv~FH~~qplFVSGGDDykIkVWnYk----------------------------------------~r   83 (1202)
T KOG0292|consen   45 DRFDEHDG-PVRGVDFHPTQPLFVSGGDDYKIKVWNYK----------------------------------------TR   83 (1202)
T ss_pred             hhhhccCC-ccceeeecCCCCeEEecCCccEEEEEecc----------------------------------------cc
Confidence            46789999 99999999999999999999999999997                                        45


Q ss_pred             CcccccccccCCeEEEEEecCCCcEEEEEcCCCeEEEEEcCCCCcceEEEeeccCCceeEEEeccCCCCeEEEEcCCCcE
Q 021657           82 GPRGIYNGHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSV  161 (309)
Q Consensus        82 ~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i  161 (309)
                      +++.++.+|-..|..+.|++.- -.++++|+|.+|+||+..+++  ++..+.+|..-|.|.+|+| ....+++++.|.+|
T Consensus        84 rclftL~GHlDYVRt~~FHhey-PWIlSASDDQTIrIWNwqsr~--~iavltGHnHYVMcAqFhp-tEDlIVSaSLDQTV  159 (1202)
T KOG0292|consen   84 RCLFTLLGHLDYVRTVFFHHEY-PWILSASDDQTIRIWNWQSRK--CIAVLTGHNHYVMCAQFHP-TEDLIVSASLDQTV  159 (1202)
T ss_pred             eehhhhccccceeEEeeccCCC-ceEEEccCCCeEEEEeccCCc--eEEEEecCceEEEeeccCC-ccceEEEecccceE
Confidence            6677889999999999999987 789999999999999999988  8999999999999999999 99999999999999


Q ss_pred             EEEecCCCCCC---CC----------------C--C--ceeeeccCCCCeeEEEEecCCCcEEEEecCCCcEEEEeCCcc
Q 021657          162 RMFDRRNLTSN---GV----------------G--S--PINKFEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKV  218 (309)
Q Consensus       162 ~i~d~~~~~~~---~~----------------~--~--~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~dg~i~iwd~~~~  218 (309)
                      |+||+......   +.                +  .  ..+.+++|...|+-++|+|.-+ ++++|++|..|++|.+...
T Consensus       160 RVWDisGLRkk~~~pg~~e~~~~~~~~~~dLfg~~DaVVK~VLEGHDRGVNwaAfhpTlp-liVSG~DDRqVKlWrmnet  238 (1202)
T KOG0292|consen  160 RVWDISGLRKKNKAPGSLEDQMRGQQGNSDLFGQTDAVVKHVLEGHDRGVNWAAFHPTLP-LIVSGADDRQVKLWRMNET  238 (1202)
T ss_pred             EEEeecchhccCCCCCCchhhhhccccchhhcCCcCeeeeeeecccccccceEEecCCcc-eEEecCCcceeeEEEeccc
Confidence            99998643210   00                0  1  1234578999999999999999 6789999999999999862


Q ss_pred             cccccCCCCCcCCCCceeeeecCCCcceeeEEEccCCCeEEEEecCCCCCCCCCCeEEEEEccccccCChhhHhHhhhcc
Q 021657          219 GKKVEQGPRTTNYPAGLFFQHAGHRDKVVDFHWNASDPWTVVSVSDDCDSTGGGGTLQIWRMSDLIYRPQDEVLAELEKF  298 (309)
Q Consensus       219 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~s~d~~s~~~dg~v~vw~~~~~~~~~~~~~~~~~~~h  298 (309)
                      +-             -.+-+..+|...|.++-|+|... +++       |.|.|++|+|||+.      ....+++++..
T Consensus       239 Ka-------------WEvDtcrgH~nnVssvlfhp~q~-lIl-------SnsEDksirVwDm~------kRt~v~tfrre  291 (1202)
T KOG0292|consen  239 KA-------------WEVDTCRGHYNNVSSVLFHPHQD-LIL-------SNSEDKSIRVWDMT------KRTSVQTFRRE  291 (1202)
T ss_pred             cc-------------eeehhhhcccCCcceEEecCccc-eeE-------ecCCCccEEEEecc------cccceeeeecc
Confidence            21             12446689999999999999665 455       55555999999999      67788888877


Q ss_pred             cceEEEeeeCC
Q 021657          299 KAHVISCTSKP  309 (309)
Q Consensus       299 ~~~v~~~~~~P  309 (309)
                      .+.-|.++-||
T Consensus       292 ndRFW~laahP  302 (1202)
T KOG0292|consen  292 NDRFWILAAHP  302 (1202)
T ss_pred             CCeEEEEEecC
Confidence            78889988887

>PLN00181 protein SPA1-RELATED; Provisional

Probab=100.00  E-value=9.2e-34  Score=249.94  Aligned_cols=278  Identities=19%  Similarity=0.245  Sum_probs=202.5

Q ss_pred             cCCCCCcceEEEEECCCCCEEEEecCCCcEEEEeCCcccccccc--CCccccccCC--------CCceeecCCCCCCCCc
Q 021657            4 LTGHQDNAEFALAMCPTEPYVLSGGKDKSVVLWSIQDHITSSAT--DPATAKSAGS--------SGSIIKQSPKPGDGND   73 (309)
Q Consensus         4 l~~H~~~~V~~~~~~~~~~~l~t~~~dg~i~vwd~~~~~~~~~~--~~~~~~~~~~--------~~~~~~~~~~~~~~~~   73 (309)
                      +.+|.+ .|++++|+|+|++|++|+.|+.|+||++.........  .+........        ......+..+..++.+
T Consensus       479 ~~~~~~-~V~~i~fs~dg~~latgg~D~~I~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~las~~~Dg~v  557 (793)
T PLN00181        479 LLNSSN-LVCAIGFDRDGEFFATAGVNKKIKIFECESIIKDGRDIHYPVVELASRSKLSGICWNSYIKSQVASSNFEGVV  557 (793)
T ss_pred             ccCCCC-cEEEEEECCCCCEEEEEeCCCEEEEEECCcccccccccccceEEecccCceeeEEeccCCCCEEEEEeCCCeE
Confidence            455887 8999999999999999999999999998642111000  0000000000        0001123445568999


Q ss_pred             ccCCCCCcCcccccccccCCeEEEEEecCCCcEEEEEcCCCeEEEEEcCCCCcceEEEeeccCCceeEEEeccCCCCeEE
Q 021657           74 KAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLIL  153 (309)
Q Consensus        74 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~  153 (309)
                      ++|+..+.+.+..+.+|.+.|++++|+|.++.+|++|+.||.|++||++++.  ....+.. ...+.++.|++.++.+|+
T Consensus       558 ~lWd~~~~~~~~~~~~H~~~V~~l~~~p~~~~~L~Sgs~Dg~v~iWd~~~~~--~~~~~~~-~~~v~~v~~~~~~g~~la  634 (793)
T PLN00181        558 QVWDVARSQLVTEMKEHEKRVWSIDYSSADPTLLASGSDDGSVKLWSINQGV--SIGTIKT-KANICCVQFPSESGRSLA  634 (793)
T ss_pred             EEEECCCCeEEEEecCCCCCEEEEEEcCCCCCEEEEEcCCCEEEEEECCCCc--EEEEEec-CCCeEEEEEeCCCCCEEE
Confidence            9999999988899999999999999997544889999999999999998876  4555554 467999999654799999


Q ss_pred             EEcCCCcEEEEecCCCCCCCCCCceeeeccCCCCeeEEEEecCCCcEEEEecCCCcEEEEeCCcccccccCCCCCcCCCC
Q 021657          154 TGSADNSVRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPA  233 (309)
Q Consensus       154 ~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~  233 (309)
                      +|+.||.|++||+++.     ..++..+.+|...|.++.|. ++.+ +++++.|+.|++||++.....         ...
T Consensus       635 tgs~dg~I~iwD~~~~-----~~~~~~~~~h~~~V~~v~f~-~~~~-lvs~s~D~~ikiWd~~~~~~~---------~~~  698 (793)
T PLN00181        635 FGSADHKVYYYDLRNP-----KLPLCTMIGHSKTVSYVRFV-DSST-LVSSSTDNTLKLWDLSMSISG---------INE  698 (793)
T ss_pred             EEeCCCeEEEEECCCC-----CccceEecCCCCCEEEEEEe-CCCE-EEEEECCCEEEEEeCCCCccc---------cCC
Confidence            9999999999999872     23567788899999999997 5664 669999999999999752110         012


Q ss_pred             ceeeeecCCCcceeeEEEccCCCeEEEEecCCCCCCCCCCeEEEEEccccccC-----ChhhHh--HhhhcccceEEEee
Q 021657          234 GLFFQHAGHRDKVVDFHWNASDPWTVVSVSDDCDSTGGGGTLQIWRMSDLIYR-----PQDEVL--AELEKFKAHVISCT  306 (309)
Q Consensus       234 ~~~~~~~~~~~~v~~~~~~~~~~~~~~s~s~d~~s~~~dg~v~vw~~~~~~~~-----~~~~~~--~~~~~h~~~v~~~~  306 (309)
                      .++..+.+|...+..+.|+|++.+ ++       +|+.|+.|++|+.......     .....+  .....|...|.+++
T Consensus       699 ~~l~~~~gh~~~i~~v~~s~~~~~-la-------sgs~D~~v~iw~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~V~~v~  770 (793)
T PLN00181        699 TPLHSFMGHTNVKNFVGLSVSDGY-IA-------TGSETNEVFVYHKAFPMPVLSYKFKTIDPVSGLEVDDASQFISSVC  770 (793)
T ss_pred             cceEEEcCCCCCeeEEEEcCCCCE-EE-------EEeCCCEEEEEECCCCCceEEEecccCCcccccccCCCCcEEEEEE
Confidence            356678899999999999998875 55       4455599999997632100     000011  12244667899999


Q ss_pred             eCC
Q 021657          307 SKP  309 (309)
Q Consensus       307 ~~P  309 (309)
                      |+|
T Consensus       771 ws~  773 (793)
T PLN00181        771 WRG  773 (793)
T ss_pred             EcC
Confidence            986

>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]

Probab=100.00  E-value=2e-33  Score=218.16  Aligned_cols=279  Identities=17%  Similarity=0.292  Sum_probs=211.4

Q ss_pred             cccCCCCCcceEEEEECCCCCEEEEecCCCcEEEEeCCccccccccC------CccccccCCCCceeecCCCCCCCCccc
Q 021657            2 EILTGHQDNAEFALAMCPTEPYVLSGGKDKSVVLWSIQDHITSSATD------PATAKSAGSSGSIIKQSPKPGDGNDKA   75 (309)
Q Consensus         2 ~~l~~H~~~~V~~~~~~~~~~~l~t~~~dg~i~vwd~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~   75 (309)
                      ..+.+|.- +++-..|+|.|.|+|+|...|+|||||.......+...      +......+.....+.......+....+
T Consensus        53 ~iYtEH~~-~vtVAkySPsG~yiASGD~sG~vRIWdtt~~~hiLKnef~v~aG~I~Di~Wd~ds~RI~avGEGrerfg~~  131 (603)
T KOG0318|consen   53 DIYTEHAH-QVTVAKYSPSGFYIASGDVSGKVRIWDTTQKEHILKNEFQVLAGPIKDISWDFDSKRIAAVGEGRERFGHV  131 (603)
T ss_pred             eeeccccc-eeEEEEeCCCceEEeecCCcCcEEEEeccCcceeeeeeeeecccccccceeCCCCcEEEEEecCccceeEE
Confidence            35778977 89999999999999999999999999987643222221      111223333333333333333334444


Q ss_pred             CCCCCcCcccccccccCCeEEEEEecCCCcEEEEEcCCCeEEEEEcCCCCcceEEEeeccCCceeEEEeccCCCCeEEEE
Q 021657           76 ADGPSVGPRGIYNGHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTG  155 (309)
Q Consensus        76 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~  155 (309)
                      +-..++..+-.+.+|...|+++.|-|..+-.++||++|++|.+|+-.-.+  ....+..|..-|.|+.|+| ++.+|++.
T Consensus       132 F~~DSG~SvGei~GhSr~ins~~~KpsRPfRi~T~sdDn~v~ffeGPPFK--Fk~s~r~HskFV~~VRysP-DG~~Fat~  208 (603)
T KOG0318|consen  132 FLWDSGNSVGEITGHSRRINSVDFKPSRPFRIATGSDDNTVAFFEGPPFK--FKSSFREHSKFVNCVRYSP-DGSRFATA  208 (603)
T ss_pred             EEecCCCccceeeccceeEeeeeccCCCceEEEeccCCCeEEEeeCCCee--eeecccccccceeeEEECC-CCCeEEEe
Confidence            44456667788899999999999999998999999999999999865545  5667788999999999999 99999999


Q ss_pred             cCCCcEEEEecCCCCCCCCCCceeeec---cCCCCeeEEEEecCCCcEEEEecCCCcEEEEeCCcccccccCCCCCcC--
Q 021657          156 SADNSVRMFDRRNLTSNGVGSPINKFE---GHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTN--  230 (309)
Q Consensus       156 ~~dg~i~i~d~~~~~~~~~~~~~~~~~---~~~~~v~~~~~~~~~~~l~~~~~~dg~i~iwd~~~~~~~~~~~~~~~~--  230 (309)
                      +.||+|.+||-.+      ++.+..+.   +|++.|.+++|+||+.++ ++++.|.+++|||+... +.....+....  
T Consensus       209 gsDgki~iyDGkt------ge~vg~l~~~~aHkGsIfalsWsPDs~~~-~T~SaDkt~KIWdVs~~-slv~t~~~~~~v~  280 (603)
T KOG0318|consen  209 GSDGKIYIYDGKT------GEKVGELEDSDAHKGSIFALSWSPDSTQF-LTVSADKTIKIWDVSTN-SLVSTWPMGSTVE  280 (603)
T ss_pred             cCCccEEEEcCCC------ccEEEEecCCCCccccEEEEEECCCCceE-EEecCCceEEEEEeecc-ceEEEeecCCchh
Confidence            9999999999999      89999887   899999999999999984 69999999999999873 32222221110  


Q ss_pred             ---------------------------CCCceeeeecCCCcceeeEEEccCCCeEEEEecCCCCCCCCCCeEEEEEcccc
Q 021657          231 ---------------------------YPAGLFFQHAGHRDKVVDFHWNASDPWTVVSVSDDCDSTGGGGTLQIWRMSDL  283 (309)
Q Consensus       231 ---------------------------~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~s~d~~s~~~dg~v~vw~~~~~  283 (309)
                                                 ........+.+|...|+++..+|++.+++        ||+.||.|.-|+... 
T Consensus       281 dqqvG~lWqkd~lItVSl~G~in~ln~~d~~~~~~i~GHnK~ITaLtv~~d~~~i~--------SgsyDG~I~~W~~~~-  351 (603)
T KOG0318|consen  281 DQQVGCLWQKDHLITVSLSGTINYLNPSDPSVLKVISGHNKSITALTVSPDGKTIY--------SGSYDGHINSWDSGS-  351 (603)
T ss_pred             ceEEEEEEeCCeEEEEEcCcEEEEecccCCChhheecccccceeEEEEcCCCCEEE--------eeccCceEEEEecCC-
Confidence                                       11124566789999999999999998776        777779999999984 


Q ss_pred             ccCChhhHhHhh-hcccceEEEee
Q 021657          284 IYRPQDEVLAEL-EKFKAHVISCT  306 (309)
Q Consensus       284 ~~~~~~~~~~~~-~~h~~~v~~~~  306 (309)
                           +..-+-. ++|...|.+++
T Consensus       352 -----g~~~~~~g~~h~nqI~~~~  370 (603)
T KOG0318|consen  352 -----GTSDRLAGKGHTNQIKGMA  370 (603)
T ss_pred             -----ccccccccccccceEEEEe
Confidence                 3222111 45666666554

>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=6.1e-35  Score=207.03  Aligned_cols=211  Identities=28%  Similarity=0.518  Sum_probs=184.3

Q ss_pred             CcccCCCCCcceEEEEECC-CCCEEEEecCCCcEEEEeCCccccccccCCccccccCCCCceeecCCCCCCCCcccCCCC
Q 021657            1 MEILTGHQDNAEFALAMCP-TEPYVLSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGP   79 (309)
Q Consensus         1 l~~l~~H~~~~V~~~~~~~-~~~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   79 (309)
                      |+.++.|+. .|.++.|++ +...++++|.|++|++|+...                                       
T Consensus        97 i~~~kEH~~-EV~Svdwn~~~r~~~ltsSWD~TiKLW~~~r---------------------------------------  136 (311)
T KOG0277|consen   97 IHKFKEHKR-EVYSVDWNTVRRRIFLTSSWDGTIKLWDPNR---------------------------------------  136 (311)
T ss_pred             hhHHHhhhh-heEEeccccccceeEEeeccCCceEeecCCC---------------------------------------
Confidence            467899999 999999998 566788999999999999863                                       


Q ss_pred             CcCcccccccccCCeEEEEEecCCCcEEEEEcCCCeEEEEEcCCCCcceEEEeeccCCceeEEEeccCCCCeEEEEcCCC
Q 021657           80 SVGPRGIYNGHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADN  159 (309)
Q Consensus        80 ~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg  159 (309)
                       .+.++++.+|...|...+|+|..+++|++++.|+++++||++...  ....+..|..+|.|+.|+..+.+.+++|+.|+
T Consensus       137 -~~Sv~Tf~gh~~~Iy~a~~sp~~~nlfas~Sgd~~l~lwdvr~~g--k~~~i~ah~~Eil~cdw~ky~~~vl~Tg~vd~  213 (311)
T KOG0277|consen  137 -PNSVQTFNGHNSCIYQAAFSPHIPNLFASASGDGTLRLWDVRSPG--KFMSIEAHNSEILCCDWSKYNHNVLATGGVDN  213 (311)
T ss_pred             -CcceEeecCCccEEEEEecCCCCCCeEEEccCCceEEEEEecCCC--ceeEEEeccceeEeecccccCCcEEEecCCCc
Confidence             344677889999999999999988999999999999999998775  34447899999999999998889999999999


Q ss_pred             cEEEEecCCCCCCCCCCceeeeccCCCCeeEEEEecCCCcEEEEecCCCcEEEEeCCcccccccCCCCCcCCCCceeeee
Q 021657          160 SVRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQH  239 (309)
Q Consensus       160 ~i~i~d~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~  239 (309)
                      .|+.||+++.     ..++..+.+|.-.|+.++|+|....+||+++.|-+++|||......              .+.+.
T Consensus       214 ~vr~wDir~~-----r~pl~eL~gh~~AVRkvk~Sph~~~lLaSasYDmT~riw~~~~~ds--------------~~e~~  274 (311)
T KOG0277|consen  214 LVRGWDIRNL-----RTPLFELNGHGLAVRKVKFSPHHASLLASASYDMTVRIWDPERQDS--------------AIETV  274 (311)
T ss_pred             eEEEEehhhc-----cccceeecCCceEEEEEecCcchhhHhhhccccceEEecccccchh--------------hhhhh
Confidence            9999999996     6789999999999999999999988999999999999999986322              34455


Q ss_pred             cCCCcceeeEEEccCCCeEEEEecCCCCCCCCCCeEEEEEc
Q 021657          240 AGHRDKVVDFHWNASDPWTVVSVSDDCDSTGGGGTLQIWRM  280 (309)
Q Consensus       240 ~~~~~~v~~~~~~~~~~~~~~s~s~d~~s~~~dg~v~vw~~  280 (309)
                      ..|+.-+..+.|++..+..+|       ++|.|..++||+.
T Consensus       275 ~~HtEFv~g~Dws~~~~~~vA-------s~gWDe~l~Vw~p  308 (311)
T KOG0277|consen  275 DHHTEFVCGLDWSLFDPGQVA-------STGWDELLYVWNP  308 (311)
T ss_pred             hccceEEeccccccccCceee-------ecccccceeeecc
Confidence            678899999999998888888       5556699999984

>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]

Probab=100.00  E-value=3.2e-34  Score=222.15  Aligned_cols=278  Identities=21%  Similarity=0.280  Sum_probs=196.8

Q ss_pred             ccCCCCCcceEEEEECCCCCEEEEecCCCcEEEEeCCcccccc---------ccCCccccccCCCCceeecCCCCCCCCc
Q 021657            3 ILTGHQDNAEFALAMCPTEPYVLSGGKDKSVVLWSIQDHITSS---------ATDPATAKSAGSSGSIIKQSPKPGDGND   73 (309)
Q Consensus         3 ~l~~H~~~~V~~~~~~~~~~~l~t~~~dg~i~vwd~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~   73 (309)
                      .|++|+. .|.++++.|.|.+|+||+.|.+|++||++......         ..+.............+.+..+...  .
T Consensus       162 ~l~hgtk-~Vsal~~Dp~GaR~~sGs~Dy~v~~wDf~gMdas~~~fr~l~P~E~h~i~sl~ys~Tg~~iLvvsg~aq--a  238 (641)
T KOG0772|consen  162 QLKHGTK-IVSALAVDPSGARFVSGSLDYTVKFWDFQGMDASMRSFRQLQPCETHQINSLQYSVTGDQILVVSGSAQ--A  238 (641)
T ss_pred             eccCCce-EEEEeeecCCCceeeeccccceEEEEecccccccchhhhccCcccccccceeeecCCCCeEEEEecCcc--e
Confidence            5788888 99999999999999999999999999998762221         2222222233333333333333222  2


Q ss_pred             ccCCCCCc------------CcccccccccCCeEEEEEecCCCcEEEEEcCCCeEEEEEcCCCCcceEEEe-----eccC
Q 021657           74 KAADGPSV------------GPRGIYNGHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPVIKVE-----KAHD  136 (309)
Q Consensus        74 ~~~~~~~~------------~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~-----~~~~  136 (309)
                      ++++....            .-...-++|...++|.+|+|.....|+|++.||+++|||+...+.. ...+     .+..
T Consensus       239 kl~DRdG~~~~e~~KGDQYI~Dm~nTKGHia~lt~g~whP~~k~~FlT~s~DgtlRiWdv~~~k~q-~qVik~k~~~g~R  317 (641)
T KOG0772|consen  239 KLLDRDGFEIVEFSKGDQYIRDMYNTKGHIAELTCGCWHPDNKEEFLTCSYDGTLRIWDVNNTKSQ-LQVIKTKPAGGKR  317 (641)
T ss_pred             eEEccCCceeeeeeccchhhhhhhccCCceeeeeccccccCcccceEEecCCCcEEEEecCCchhh-eeEEeeccCCCcc
Confidence            22221111            1123346899999999999999899999999999999999865532 2222     2334


Q ss_pred             CceeEEEeccCCCCeEEEEcCCCcEEEEecCCCCCCCCCCceeeeccCCC--CeeEEEEecCCCcEEEEecCCCcEEEEe
Q 021657          137 ADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGHSA--AVLCVQWSPDKSSVFGSSAEDGLLNIWD  214 (309)
Q Consensus       137 ~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~--~v~~~~~~~~~~~l~~~~~~dg~i~iwd  214 (309)
                      -+++.++|+| ++..+|+|..||.|.+||.+....   ......-+.|..  .|++|.|++||++| ++-+.|+++++||
T Consensus       318 v~~tsC~~nr-dg~~iAagc~DGSIQ~W~~~~~~v---~p~~~vk~AH~~g~~Itsi~FS~dg~~L-lSRg~D~tLKvWD  392 (641)
T KOG0772|consen  318 VPVTSCAWNR-DGKLIAAGCLDGSIQIWDKGSRTV---RPVMKVKDAHLPGQDITSISFSYDGNYL-LSRGFDDTLKVWD  392 (641)
T ss_pred             cCceeeecCC-CcchhhhcccCCceeeeecCCccc---ccceEeeeccCCCCceeEEEeccccchh-hhccCCCceeeee
Confidence            5789999999 999999999999999999876431   112223345655  89999999999975 5999999999999


Q ss_pred             CCcccccccCCCCCcCCCCceeeeecCCCcceeeEEEccCCCeEEEEecCCCCCCCCCCeEEEEEccccccCChhhHhHh
Q 021657          215 YEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKVVDFHWNASDPWTVVSVSDDCDSTGGGGTLQIWRMSDLIYRPQDEVLAE  294 (309)
Q Consensus       215 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~s~d~~s~~~dg~v~vw~~~~~~~~~~~~~~~~  294 (309)
                      ++.+++++.....            .....+-+.++|+|+...++...|.-  -+...|.+.+||..      +.+.+++
T Consensus       393 Lrq~kkpL~~~tg------------L~t~~~~tdc~FSPd~kli~TGtS~~--~~~~~g~L~f~d~~------t~d~v~k  452 (641)
T KOG0772|consen  393 LRQFKKPLNVRTG------------LPTPFPGTDCCFSPDDKLILTGTSAP--NGMTAGTLFFFDRM------TLDTVYK  452 (641)
T ss_pred             ccccccchhhhcC------------CCccCCCCccccCCCceEEEeccccc--CCCCCceEEEEecc------ceeeEEE
Confidence            9997776442111            11223568899999776544333333  45566899999998      6677777


Q ss_pred             hhcccceEEEeeeCC
Q 021657          295 LEKFKAHVISCTSKP  309 (309)
Q Consensus       295 ~~~h~~~v~~~~~~P  309 (309)
                      +.-....|..+.|||
T Consensus       453 i~i~~aSvv~~~Whp  467 (641)
T KOG0772|consen  453 IDISTASVVRCLWHP  467 (641)
T ss_pred             ecCCCceEEEEeecc
Confidence            776788999999998

>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]

Probab=100.00  E-value=3.9e-34  Score=213.65  Aligned_cols=264  Identities=19%  Similarity=0.340  Sum_probs=205.7

Q ss_pred             CCCcceEEEEECCCCCEEEEecCCCcEEEEeCCcccccccc---CCcc-ccccCCCCceeecCCCCCCCCcccCCCCCcC
Q 021657            7 HQDNAEFALAMCPTEPYVLSGGKDKSVVLWSIQDHITSSAT---DPAT-AKSAGSSGSIIKQSPKPGDGNDKAADGPSVG   82 (309)
Q Consensus         7 H~~~~V~~~~~~~~~~~l~t~~~dg~i~vwd~~~~~~~~~~---~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   82 (309)
                      |.+ -|.++...  +++++||++||.+|+||..........   .+.. ......+.....+..+..+..+.+|.....+
T Consensus       104 hdD-WVSsv~~~--~~~IltgsYDg~~riWd~~Gk~~~~~~Ght~~ik~v~~v~~n~~~~~fvsas~Dqtl~Lw~~~~~~  180 (423)
T KOG0313|consen  104 HDD-WVSSVKGA--SKWILTGSYDGTSRIWDLKGKSIKTIVGHTGPIKSVAWVIKNSSSCLFVSASMDQTLRLWKWNVGE  180 (423)
T ss_pred             chh-hhhhhccc--CceEEEeecCCeeEEEecCCceEEEEecCCcceeeeEEEecCCccceEEEecCCceEEEEEecCch
Confidence            555 56666665  789999999999999998865322211   1111 1111112222244555667777777665543


Q ss_pred             ----cccccccccCCeEEEEEecCCCcEEEEEcCCCeEEEEEcCCC-----------------------CcceEEEeecc
Q 021657           83 ----PRGIYNGHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVG-----------------------TSPVIKVEKAH  135 (309)
Q Consensus        83 ----~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~-----------------------~~~~~~~~~~~  135 (309)
                          .+....||...|.++...+++ ..+++|+.|.+|.||+....                       ...++..+.+|
T Consensus       181 ~~~~~~~~~~GHk~~V~sVsv~~sg-tr~~SgS~D~~lkiWs~~~~~~~~~E~~s~~rrk~~~~~~~~~~r~P~vtl~GH  259 (423)
T KOG0313|consen  181 NKVKALKVCRGHKRSVDSVSVDSSG-TRFCSGSWDTMLKIWSVETDEEDELESSSNRRRKKQKREKEGGTRTPLVTLEGH  259 (423)
T ss_pred             hhhhHHhHhcccccceeEEEecCCC-CeEEeecccceeeecccCCCccccccccchhhhhhhhhhhcccccCceEEeccc
Confidence                334456999999999999999 88999999999999993211                       11355677899


Q ss_pred             CCceeEEEeccCCCCeEEEEcCCCcEEEEecCCCCCCCCCCceeeeccCCCCeeEEEEecCCCcEEEEecCCCcEEEEeC
Q 021657          136 DADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDY  215 (309)
Q Consensus       136 ~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~dg~i~iwd~  215 (309)
                      ..+|.++.|++  ...+++++.|.+|+.||+.+      +..+.++.+ +..+++++.+|... |+++|+.|..+++||-
T Consensus       260 t~~Vs~V~w~d--~~v~yS~SwDHTIk~WDlet------g~~~~~~~~-~ksl~~i~~~~~~~-Ll~~gssdr~irl~DP  329 (423)
T KOG0313|consen  260 TEPVSSVVWSD--ATVIYSVSWDHTIKVWDLET------GGLKSTLTT-NKSLNCISYSPLSK-LLASGSSDRHIRLWDP  329 (423)
T ss_pred             ccceeeEEEcC--CCceEeecccceEEEEEeec------ccceeeeec-CcceeEeecccccc-eeeecCCCCceeecCC
Confidence            99999999997  78899999999999999999      888888874 56789999999877 6889999999999999


Q ss_pred             CcccccccCCCCCcCCCCceeeeecCCCcceeeEEEccCCCeEEEEecCCCCCCCCCCeEEEEEccccccCChhhHhHhh
Q 021657          216 EKVGKKVEQGPRTTNYPAGLFFQHAGHRDKVVDFHWNASDPWTVVSVSDDCDSTGGGGTLQIWRMSDLIYRPQDEVLAEL  295 (309)
Q Consensus       216 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~s~d~~s~~~dg~v~vw~~~~~~~~~~~~~~~~~  295 (309)
                      ++...            ....+.+.+|...|.++.|+|.+.++++++|.|       +++++||++.     ...++..+
T Consensus       330 R~~~g------------s~v~~s~~gH~nwVssvkwsp~~~~~~~S~S~D-------~t~klWDvRS-----~k~plydI  385 (423)
T KOG0313|consen  330 RTGDG------------SVVSQSLIGHKNWVSSVKWSPTNEFQLVSGSYD-------NTVKLWDVRS-----TKAPLYDI  385 (423)
T ss_pred             CCCCC------------ceeEEeeecchhhhhheecCCCCceEEEEEecC-------CeEEEEEecc-----CCCcceee
Confidence            98433            234578899999999999999999999988877       9999999993     34499999


Q ss_pred             hcccceEEEeeeC
Q 021657          296 EKFKAHVISCTSK  308 (309)
Q Consensus       296 ~~h~~~v~~~~~~  308 (309)
                      .+|.+.|.++.|.
T Consensus       386 ~~h~DKvl~vdW~  398 (423)
T KOG0313|consen  386 AGHNDKVLSVDWN  398 (423)
T ss_pred             ccCCceEEEEecc
Confidence            9999999999985

>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]

Probab=100.00  E-value=4.4e-33  Score=203.56  Aligned_cols=266  Identities=15%  Similarity=0.254  Sum_probs=203.6

Q ss_pred             ccCCCCCcceEEEEECCCCCEEEEecCCCcEEEEeCCccccccccCCc----cccccCCCCceeecCCCCCCCCcccCCC
Q 021657            3 ILTGHQDNAEFALAMCPTEPYVLSGGKDKSVVLWSIQDHITSSATDPA----TAKSAGSSGSIIKQSPKPGDGNDKAADG   78 (309)
Q Consensus         3 ~l~~H~~~~V~~~~~~~~~~~l~t~~~dg~i~vwd~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~   78 (309)
                      .++.-.+ .|+++.|+++|.+|++++.|.+++|||..++.........    ..............+....+..++..++
T Consensus         9 ~f~~~~~-~i~sl~fs~~G~~litss~dDsl~LYd~~~g~~~~ti~skkyG~~~~~Fth~~~~~i~sStk~d~tIryLsl   87 (311)
T KOG1446|consen    9 VFRETNG-KINSLDFSDDGLLLITSSEDDSLRLYDSLSGKQVKTINSKKYGVDLACFTHHSNTVIHSSTKEDDTIRYLSL   87 (311)
T ss_pred             ccccCCC-ceeEEEecCCCCEEEEecCCCeEEEEEcCCCceeeEeecccccccEEEEecCCceEEEccCCCCCceEEEEe
Confidence            4455444 8999999999999999999999999999988544333221    2222222333333333466788999999


Q ss_pred             CCcCcccccccccCCeEEEEEecCCCcEEEEEcCCCeEEEEEcCCCCcceEEEeeccCCceeEEEeccCCCCeEEEEcCC
Q 021657           79 PSVGPRGIYNGHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSAD  158 (309)
Q Consensus        79 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d  158 (309)
                      .+.+.++.+.||...|++++.+|-+ ..|++++.|++|++||++..+  +...+..  ..-...+|+| +|-++|++...
T Consensus        88 ~dNkylRYF~GH~~~V~sL~~sP~~-d~FlS~S~D~tvrLWDlR~~~--cqg~l~~--~~~pi~AfDp-~GLifA~~~~~  161 (311)
T KOG1446|consen   88 HDNKYLRYFPGHKKRVNSLSVSPKD-DTFLSSSLDKTVRLWDLRVKK--CQGLLNL--SGRPIAAFDP-EGLIFALANGS  161 (311)
T ss_pred             ecCceEEEcCCCCceEEEEEecCCC-CeEEecccCCeEEeeEecCCC--CceEEec--CCCcceeECC-CCcEEEEecCC
Confidence            9999999999999999999999988 789999999999999999777  3333332  2334678999 99999999988


Q ss_pred             CcEEEEecCCCCCCCCCCceeeecc---CCCCeeEEEEecCCCcEEEEecCCCcEEEEeCCcccccccCCCCCcCCCCce
Q 021657          159 NSVRMFDRRNLTSNGVGSPINKFEG---HSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGL  235 (309)
Q Consensus       159 g~i~i~d~~~~~~~~~~~~~~~~~~---~~~~v~~~~~~~~~~~l~~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~  235 (309)
                      ..|++||+|...    ..+..++..   .....+.|.|+|||+++| .++..+.+++.|.-.               +..
T Consensus       162 ~~IkLyD~Rs~d----kgPF~tf~i~~~~~~ew~~l~FS~dGK~iL-lsT~~s~~~~lDAf~---------------G~~  221 (311)
T KOG1446|consen  162 ELIKLYDLRSFD----KGPFTTFSITDNDEAEWTDLEFSPDGKSIL-LSTNASFIYLLDAFD---------------GTV  221 (311)
T ss_pred             CeEEEEEecccC----CCCceeEccCCCCccceeeeEEcCCCCEEE-EEeCCCcEEEEEccC---------------CcE
Confidence            899999999865    345555543   366789999999999876 667788999999766               233


Q ss_pred             eeeecCCCcc---eeeEEEccCCCeEEEEecCCCCCCCCCCeEEEEEccccccCChhhHhHhhhc-ccceEEEeeeCC
Q 021657          236 FFQHAGHRDK---VVDFHWNASDPWTVVSVSDDCDSTGGGGTLQIWRMSDLIYRPQDEVLAELEK-FKAHVISCTSKP  309 (309)
Q Consensus       236 ~~~~~~~~~~---v~~~~~~~~~~~~~~s~s~d~~s~~~dg~v~vw~~~~~~~~~~~~~~~~~~~-h~~~v~~~~~~P  309 (309)
                      ...+.++...   -.+..|+|++.+++        +|+.||+|.+|+++      +++.+..+++ +.+++.++.|.|
T Consensus       222 ~~tfs~~~~~~~~~~~a~ftPds~Fvl--------~gs~dg~i~vw~~~------tg~~v~~~~~~~~~~~~~~~fnP  285 (311)
T KOG1446|consen  222 KSTFSGYPNAGNLPLSATFTPDSKFVL--------SGSDDGTIHVWNLE------TGKKVAVLRGPNGGPVSCVRFNP  285 (311)
T ss_pred             eeeEeeccCCCCcceeEEECCCCcEEE--------EecCCCcEEEEEcC------CCcEeeEecCCCCCCccccccCC
Confidence            3444444332   26788999998766        66666999999998      7888888877 688999999987

>KOG0283 consensus WD40 repeat-containing protein [Function unknown]

Probab=100.00  E-value=7.4e-34  Score=231.99  Aligned_cols=264  Identities=18%  Similarity=0.318  Sum_probs=183.9

Q ss_pred             cccC-CCCCcceEEEEECCCCCEEEEecCCCcEEEEeCCccccccccCCc----c-----------ccccC--CCCceee
Q 021657            2 EILT-GHQDNAEFALAMCPTEPYVLSGGKDKSVVLWSIQDHITSSATDPA----T-----------AKSAG--SSGSIIK   63 (309)
Q Consensus         2 ~~l~-~H~~~~V~~~~~~~~~~~l~t~~~dg~i~vwd~~~~~~~~~~~~~----~-----------~~~~~--~~~~~~~   63 (309)
                      |.+. +|.+ +|+++.||+||+|||+||+||.||||.+............    .           .....  .......
T Consensus       260 Qe~~~ah~g-aIw~mKFS~DGKyLAsaGeD~virVWkVie~e~~~~~~~~~~~~~~~~~~~s~~~p~~s~~~~~~~~~s~  338 (712)
T KOG0283|consen  260 QEISNAHKG-AIWAMKFSHDGKYLASAGEDGVIRVWKVIESERMRVAEGDSSCMYFEYNANSQIEPSTSSEEKISSRTSS  338 (712)
T ss_pred             eccccccCC-cEEEEEeCCCCceeeecCCCceEEEEEEeccchhcccccccchhhhhhhhccccCccccccccccccccc
Confidence            4456 8999 8999999999999999999999999998763111000000    0           00000  0000001


Q ss_pred             cCCCCCCCCcccCC---CCCcCcccccccccCCeEEEEEecCCCcEEEEEcCCCeEEEEEcCCCCcceEEEeeccCCcee
Q 021657           64 QSPKPGDGNDKAAD---GPSVGPRGIYNGHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLH  140 (309)
Q Consensus        64 ~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~  140 (309)
                      .........+.+-.   ....+++..+.+|.+.|.++.|+.++  +|++++.|.+|+||++...+  +...+ .|.+-|+
T Consensus       339 ~~~~~~s~~~~~p~~~f~f~ekP~~ef~GHt~DILDlSWSKn~--fLLSSSMDKTVRLWh~~~~~--CL~~F-~HndfVT  413 (712)
T KOG0283|consen  339 SRKGSQSPCVLLPLKAFVFSEKPFCEFKGHTADILDLSWSKNN--FLLSSSMDKTVRLWHPGRKE--CLKVF-SHNDFVT  413 (712)
T ss_pred             cccccCCccccCCCccccccccchhhhhccchhheecccccCC--eeEeccccccEEeecCCCcc--eeeEE-ecCCeeE
Confidence            11111111111111   22457888999999999999999875  89999999999999998666  56665 6999999


Q ss_pred             EEEeccCCCCeEEEEcCCCcEEEEecCCCCCCCCCCceeeeccCCCCeeEEEEecCCCcEEEEecCCCcEEEEeCCcccc
Q 021657          141 CVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGK  220 (309)
Q Consensus       141 ~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~dg~i~iwd~~~~~~  220 (309)
                      |++|+|.+.++|++|+.||.||||++..      .+.+. ...-..-|++++|.|||++. +.|+.+|.+++|+......
T Consensus       414 cVaFnPvDDryFiSGSLD~KvRiWsI~d------~~Vv~-W~Dl~~lITAvcy~PdGk~a-vIGt~~G~C~fY~t~~lk~  485 (712)
T KOG0283|consen  414 CVAFNPVDDRYFISGSLDGKVRLWSISD------KKVVD-WNDLRDLITAVCYSPDGKGA-VIGTFNGYCRFYDTEGLKL  485 (712)
T ss_pred             EEEecccCCCcEeecccccceEEeecCc------CeeEe-ehhhhhhheeEEeccCCceE-EEEEeccEEEEEEccCCeE
Confidence            9999999999999999999999999986      44444 43345789999999999974 5999999999999987333


Q ss_pred             cccCCCCCcCCCCceeeeecCCCcceeeEEEccCCCeEEEEecCCCCCCCCCCeEEEEEccccccCChhhHhHhhhccc
Q 021657          221 KVEQGPRTTNYPAGLFFQHAGHRDKVVDFHWNASDPWTVVSVSDDCDSTGGGGTLQIWRMSDLIYRPQDEVLAELEKFK  299 (309)
Q Consensus       221 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~s~d~~s~~~dg~v~vw~~~~~~~~~~~~~~~~~~~h~  299 (309)
                      .....-...+..     . ..|. .|+++.|.|...--++..|       .|..|+|+|.+      +.+++..++++.
T Consensus       486 ~~~~~I~~~~~K-----k-~~~~-rITG~Q~~p~~~~~vLVTS-------nDSrIRI~d~~------~~~lv~KfKG~~  544 (712)
T KOG0283|consen  486 VSDFHIRLHNKK-----K-KQGK-RITGLQFFPGDPDEVLVTS-------NDSRIRIYDGR------DKDLVHKFKGFR  544 (712)
T ss_pred             EEeeeEeeccCc-----c-ccCc-eeeeeEecCCCCCeEEEec-------CCCceEEEecc------chhhhhhhcccc
Confidence            222111110000     0 1123 8999999986664333333       44899999998      567777777654

>PTZ00420 coronin; Provisional

Probab=100.00  E-value=4.8e-33  Score=229.71  Aligned_cols=239  Identities=18%  Similarity=0.283  Sum_probs=171.9

Q ss_pred             cccCCCCCcceEEEEECCC-CCEEEEecCCCcEEEEeCCccccccccCCccccccCCCCceeecCCCCCCCCcccCCCCC
Q 021657            2 EILTGHQDNAEFALAMCPT-EPYVLSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPS   80 (309)
Q Consensus         2 ~~l~~H~~~~V~~~~~~~~-~~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (309)
                      ..|.+|.+ +|++++|+|+ +.+|+||+.||+|+|||+.+......                                ..
T Consensus        68 ~~L~gH~~-~V~~lafsP~~~~lLASgS~DgtIrIWDi~t~~~~~~--------------------------------~i  114 (568)
T PTZ00420         68 IKLKGHTS-SILDLQFNPCFSEILASGSEDLTIRVWEIPHNDESVK--------------------------------EI  114 (568)
T ss_pred             EEEcCCCC-CEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCCcccc--------------------------------cc
Confidence            46889998 8999999996 78999999999999999974311000                                00


Q ss_pred             cCcccccccccCCeEEEEEecCCCcEEEEEcCCCeEEEEEcCCCCcceEEEeeccCCceeEEEeccCCCCeEEEEcCCCc
Q 021657           81 VGPRGIYNGHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNS  160 (309)
Q Consensus        81 ~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~  160 (309)
                      ..++..+.+|...|.+++|+|++..+|++++.|++|+|||+++++  ....+. |...|.+++|+| ++.+|++++.|+.
T Consensus       115 ~~p~~~L~gH~~~V~sVaf~P~g~~iLaSgS~DgtIrIWDl~tg~--~~~~i~-~~~~V~Slswsp-dG~lLat~s~D~~  190 (568)
T PTZ00420        115 KDPQCILKGHKKKISIIDWNPMNYYIMCSSGFDSFVNIWDIENEK--RAFQIN-MPKKLSSLKWNI-KGNLLSGTCVGKH  190 (568)
T ss_pred             ccceEEeecCCCcEEEEEECCCCCeEEEEEeCCCeEEEEECCCCc--EEEEEe-cCCcEEEEEECC-CCCEEEEEecCCE
Confidence            123445678999999999999986667899999999999999887  344443 567899999999 9999999999999


Q ss_pred             EEEEecCCCCCCCCCCceeeeccCCCCeeEE-----EEecCCCcEEEEecCC----CcEEEEeCCcccccccCCCCCcCC
Q 021657          161 VRMFDRRNLTSNGVGSPINKFEGHSAAVLCV-----QWSPDKSSVFGSSAED----GLLNIWDYEKVGKKVEQGPRTTNY  231 (309)
Q Consensus       161 i~i~d~~~~~~~~~~~~~~~~~~~~~~v~~~-----~~~~~~~~l~~~~~~d----g~i~iwd~~~~~~~~~~~~~~~~~  231 (309)
                      |++||+++      ++.+.++.+|.+.+.+.     .|++++.+++ +++.|    +.|+|||++....+..        
T Consensus       191 IrIwD~Rs------g~~i~tl~gH~g~~~s~~v~~~~fs~d~~~Il-TtG~d~~~~R~VkLWDlr~~~~pl~--------  255 (568)
T PTZ00420        191 MHIIDPRK------QEIASSFHIHDGGKNTKNIWIDGLGGDDNYIL-STGFSKNNMREMKLWDLKNTTSALV--------  255 (568)
T ss_pred             EEEEECCC------CcEEEEEecccCCceeEEEEeeeEcCCCCEEE-EEEcCCCCccEEEEEECCCCCCceE--------
Confidence            99999999      88888999998765433     3457888765 55544    4799999997333211        


Q ss_pred             CCceeeeecCCCcceeeEEEccCCCeEEEEecCCCCCCCCCCeEEEEEccccccCChhhHhHhhhcccceEEEeeeCC
Q 021657          232 PAGLFFQHAGHRDKVVDFHWNASDPWTVVSVSDDCDSTGGGGTLQIWRMSDLIYRPQDEVLAELEKFKAHVISCTSKP  309 (309)
Q Consensus       232 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~s~d~~s~~~dg~v~vw~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~P  309 (309)
                          ...+..+...+.. .|.++...++++|+       .|+.|++|++...    ....+.++. +..++.+++|.|
T Consensus       256 ----~~~ld~~~~~L~p-~~D~~tg~l~lsGk-------GD~tIr~~e~~~~----~~~~l~~~~-s~~p~~g~~f~P  316 (568)
T PTZ00420        256 ----TMSIDNASAPLIP-HYDESTGLIYLIGK-------GDGNCRYYQHSLG----SIRKVNEYK-SCSPFRSFGFLP  316 (568)
T ss_pred             ----EEEecCCccceEE-eeeCCCCCEEEEEE-------CCCeEEEEEccCC----cEEeecccc-cCCCccceEEcc
Confidence                1223333333333 34455555666554       4499999999731    122233333 556777788776

>KOG0645 consensus WD40 repeat protein [General function prediction only]

Probab=100.00  E-value=3.8e-33  Score=199.65  Aligned_cols=225  Identities=23%  Similarity=0.439  Sum_probs=180.1

Q ss_pred             CCCCCcceEEEEECCCCCEEEEecCCCcEEEEeCCccccccccCCccccccCCCCceeecCCCCCCCCcccCCCCCcCcc
Q 021657            5 TGHQDNAEFALAMCPTEPYVLSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPR   84 (309)
Q Consensus         5 ~~H~~~~V~~~~~~~~~~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   84 (309)
                      .+|+. .|++++|+|.|++|++||.|.++.||.-..                                      ...+.+
T Consensus        58 ~~hkr-sVRsvAwsp~g~~La~aSFD~t~~Iw~k~~--------------------------------------~efecv   98 (312)
T KOG0645|consen   58 DGHKR-SVRSVAWSPHGRYLASASFDATVVIWKKED--------------------------------------GEFECV   98 (312)
T ss_pred             ccchh-eeeeeeecCCCcEEEEeeccceEEEeecCC--------------------------------------CceeEE
Confidence            37898 899999999999999999999999998764                                      255678


Q ss_pred             cccccccCCeEEEEEecCCCcEEEEEcCCCeEEEEEcCCC-CcceEEEeeccCCceeEEEeccCCCCeEEEEcCCCcEEE
Q 021657           85 GIYNGHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVG-TSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRM  163 (309)
Q Consensus        85 ~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~-~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i  163 (309)
                      ..+++|...|.+++|+++| ++||+|++|..|-||.+..+ +..+...+..|...|..+.|+| ...+|++++.|.+|++
T Consensus        99 ~~lEGHEnEVK~Vaws~sG-~~LATCSRDKSVWiWe~deddEfec~aVL~~HtqDVK~V~WHP-t~dlL~S~SYDnTIk~  176 (312)
T KOG0645|consen   99 ATLEGHENEVKCVAWSASG-NYLATCSRDKSVWIWEIDEDDEFECIAVLQEHTQDVKHVIWHP-TEDLLFSCSYDNTIKV  176 (312)
T ss_pred             eeeeccccceeEEEEcCCC-CEEEEeeCCCeEEEEEecCCCcEEEEeeeccccccccEEEEcC-CcceeEEeccCCeEEE
Confidence            8899999999999999999 99999999999999998743 3456778899999999999999 9999999999999999


Q ss_pred             EecCCCCCCCCCCceeeeccCCCCeeEEEEecCCCcEEEEecCCCcEEEEeCCccccc-----ccCCCCC----------
Q 021657          164 FDRRNLTSNGVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKK-----VEQGPRT----------  228 (309)
Q Consensus       164 ~d~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~dg~i~iwd~~~~~~~-----~~~~~~~----------  228 (309)
                      |+-.....   ..+++++.+|...|.+++|++.|.. ++++++|++++||.....-..     ....+..          
T Consensus       177 ~~~~~ddd---W~c~~tl~g~~~TVW~~~F~~~G~r-l~s~sdD~tv~Iw~~~~~~~~~~sr~~Y~v~W~~~~IaS~ggD  252 (312)
T KOG0645|consen  177 YRDEDDDD---WECVQTLDGHENTVWSLAFDNIGSR-LVSCSDDGTVSIWRLYTDLSGMHSRALYDVPWDNGVIASGGGD  252 (312)
T ss_pred             EeecCCCC---eeEEEEecCccceEEEEEecCCCce-EEEecCCcceEeeeeccCcchhcccceEeeeecccceEeccCC
Confidence            98763211   7889999999999999999999987 579999999999994421111     0000000          


Q ss_pred             --------cCCC----Ccee-eeecCCCcceeeEEEccCCCeEEEEecCCCCCCCCCCeEEEEEcc
Q 021657          229 --------TNYP----AGLF-FQHAGHRDKVVDFHWNASDPWTVVSVSDDCDSTGGGGTLQIWRMS  281 (309)
Q Consensus       229 --------~~~~----~~~~-~~~~~~~~~v~~~~~~~~~~~~~~s~s~d~~s~~~dg~v~vw~~~  281 (309)
                              ...+    ...+ .....|...|+++.|+|....+++++|+|       |.|++|.+.
T Consensus       253 ~~i~lf~~s~~~d~p~~~l~~~~~~aHe~dVNsV~w~p~~~~~L~s~~DD-------G~v~~W~l~  311 (312)
T KOG0645|consen  253 DAIRLFKESDSPDEPSWNLLAKKEGAHEVDVNSVQWNPKVSNRLASGGDD-------GIVNFWELE  311 (312)
T ss_pred             CEEEEEEecCCCCCchHHHHHhhhcccccccceEEEcCCCCCceeecCCC-------ceEEEEEec
Confidence                    0001    1111 13456888999999999766677755555       999999975

>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]

Probab=100.00  E-value=7.1e-34  Score=216.81  Aligned_cols=248  Identities=21%  Similarity=0.377  Sum_probs=203.0

Q ss_pred             CCCCcceEEEEECCCC-CEEEEecCCCcEEEEeCCccccccccCCccccccCCCCceeecCCCCCCCCcccCCCCCcCcc
Q 021657            6 GHQDNAEFALAMCPTE-PYVLSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPR   84 (309)
Q Consensus         6 ~H~~~~V~~~~~~~~~-~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   84 (309)
                      -|.+ .|+.+.+-|.. ..+|+++..+.|.|||..+........                              ....+-
T Consensus       122 ~h~g-EVnRaRymPQnp~iVAt~t~~~dv~Vfd~tk~~s~~~~~------------------------------~~~~Pd  170 (422)
T KOG0264|consen  122 NHDG-EVNRARYMPQNPNIVATKTSSGDVYVFDYTKHPSKPKAS------------------------------GECRPD  170 (422)
T ss_pred             cCCc-cchhhhhCCCCCcEEEecCCCCCEEEEEeccCCCccccc------------------------------ccCCCc
Confidence            3777 78999999965 567788999999999987542221110                              023455


Q ss_pred             cccccccCCeEEEEEecCCCcEEEEEcCCCeEEEEEcCCCCc-----ceEEEeeccCCceeEEEeccCCCCeEEEEcCCC
Q 021657           85 GIYNGHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTS-----PVIKVEKAHDADLHCVDWNPLDDNLILTGSADN  159 (309)
Q Consensus        85 ~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~-----~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg  159 (309)
                      ..+.+|.+.-.+++|++.....|++++.|++|++||+.....     .....+.+|...|..++|++....+|++++.|+
T Consensus       171 l~L~gH~~eg~glsWn~~~~g~Lls~~~d~~i~lwdi~~~~~~~~~~~p~~~~~~h~~~VeDV~~h~~h~~lF~sv~dd~  250 (422)
T KOG0264|consen  171 LRLKGHEKEGYGLSWNRQQEGTLLSGSDDHTICLWDINAESKEDKVVDPKTIFSGHEDVVEDVAWHPLHEDLFGSVGDDG  250 (422)
T ss_pred             eEEEeecccccccccccccceeEeeccCCCcEEEEeccccccCCccccceEEeecCCcceehhhccccchhhheeecCCC
Confidence            678899988889999998878899999999999999975432     356678899999999999998889999999999


Q ss_pred             cEEEEecCCCCCCCCCCceeeeccCCCCeeEEEEecCCCcEEEEecCCCcEEEEeCCcccccccCCCCCcCCCCceeeee
Q 021657          160 SVRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQH  239 (309)
Q Consensus       160 ~i~i~d~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~  239 (309)
                      .+.|||+|+..    .++....++|.+.|++++|+|-+.++||+|+.|++|++||+|+..+              ++..+
T Consensus       251 ~L~iwD~R~~~----~~~~~~~~ah~~~vn~~~fnp~~~~ilAT~S~D~tV~LwDlRnL~~--------------~lh~~  312 (422)
T KOG0264|consen  251 KLMIWDTRSNT----SKPSHSVKAHSAEVNCVAFNPFNEFILATGSADKTVALWDLRNLNK--------------PLHTF  312 (422)
T ss_pred             eEEEEEcCCCC----CCCcccccccCCceeEEEeCCCCCceEEeccCCCcEEEeechhccc--------------Cceec
Confidence            99999999521    6777888999999999999999999999999999999999998443              56788


Q ss_pred             cCCCcceeeEEEccCCCeEEEEecCCCCCCCCCCeEEEEEccccccC--------ChhhHhHhhhcccceEEEeeeCC
Q 021657          240 AGHRDKVVDFHWNASDPWTVVSVSDDCDSTGGGGTLQIWRMSDLIYR--------PQDEVLAELEKFKAHVISCTSKP  309 (309)
Q Consensus       240 ~~~~~~v~~~~~~~~~~~~~~s~s~d~~s~~~dg~v~vw~~~~~~~~--------~~~~~~~~~~~h~~~v~~~~~~P  309 (309)
                      .+|...|..|.|+|+...++|+++.|       +.+.|||+......        ...+++..-.||...|....|+|
T Consensus       313 e~H~dev~~V~WSPh~etvLASSg~D-------~rl~vWDls~ig~eq~~eda~dgppEllF~HgGH~~kV~DfsWnp  383 (422)
T KOG0264|consen  313 EGHEDEVFQVEWSPHNETVLASSGTD-------RRLNVWDLSRIGEEQSPEDAEDGPPELLFIHGGHTAKVSDFSWNP  383 (422)
T ss_pred             cCCCcceEEEEeCCCCCceeEecccC-------CcEEEEeccccccccChhhhccCCcceeEEecCcccccccccCCC
Confidence            99999999999999999999965555       99999999854322        12234556678999999999987

>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=8.2e-34  Score=232.92  Aligned_cols=242  Identities=21%  Similarity=0.344  Sum_probs=202.6

Q ss_pred             cCCCCCcceEEEEECCCCCEEEEecCCCcEEEEeCCccccccccCCccccccCCCCceeecCCCCCCCCcccCCCCCcCc
Q 021657            4 LTGHQDNAEFALAMCPTEPYVLSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGP   83 (309)
Q Consensus         4 l~~H~~~~V~~~~~~~~~~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   83 (309)
                      ++.-+. .|.+++|+|...+++++--.|.|++||.+                                        ....
T Consensus         5 fEskSs-RvKglsFHP~rPwILtslHsG~IQlWDYR----------------------------------------M~tl   43 (1202)
T KOG0292|consen    5 FESKSS-RVKGLSFHPKRPWILTSLHSGVIQLWDYR----------------------------------------MGTL   43 (1202)
T ss_pred             hhcccc-cccceecCCCCCEEEEeecCceeeeehhh----------------------------------------hhhH
Confidence            444444 78999999999999999999999999987                                        3345


Q ss_pred             ccccccccCCeEEEEEecCCCcEEEEEcCCCeEEEEEcCCCCcceEEEeeccCCceeEEEeccCCCCeEEEEcCCCcEEE
Q 021657           84 RGIYNGHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRM  163 (309)
Q Consensus        84 ~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i  163 (309)
                      +..|.+|.++|..+.|+|+. .+|++|++|-.|++|+..+.+  +..++.+|-+-|+.+.|++ .-.++++++.|.+|+|
T Consensus        44 i~rFdeHdGpVRgv~FH~~q-plFVSGGDDykIkVWnYk~rr--clftL~GHlDYVRt~~FHh-eyPWIlSASDDQTIrI  119 (1202)
T KOG0292|consen   44 IDRFDEHDGPVRGVDFHPTQ-PLFVSGGDDYKIKVWNYKTRR--CLFTLLGHLDYVRTVFFHH-EYPWILSASDDQTIRI  119 (1202)
T ss_pred             HhhhhccCCccceeeecCCC-CeEEecCCccEEEEEecccce--ehhhhccccceeEEeeccC-CCceEEEccCCCeEEE
Confidence            67788999999999999998 789999999999999998888  8889999999999999999 8999999999999999


Q ss_pred             EecCCCCCCCCCCceeeeccCCCCeeEEEEecCCCcEEEEecCCCcEEEEeCCcccccccCCCC----CcC--------C
Q 021657          164 FDRRNLTSNGVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPR----TTN--------Y  231 (309)
Q Consensus       164 ~d~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~dg~i~iwd~~~~~~~~~~~~~----~~~--------~  231 (309)
                      |+..+      .+++..+.+|...|.|.+|+|... ++++++-|.+|+|||+....+.......    ...        .
T Consensus       120 WNwqs------r~~iavltGHnHYVMcAqFhptED-lIVSaSLDQTVRVWDisGLRkk~~~pg~~e~~~~~~~~~~dLfg  192 (1202)
T KOG0292|consen  120 WNWQS------RKCIAVLTGHNHYVMCAQFHPTED-LIVSASLDQTVRVWDISGLRKKNKAPGSLEDQMRGQQGNSDLFG  192 (1202)
T ss_pred             EeccC------CceEEEEecCceEEEeeccCCccc-eEEEecccceEEEEeecchhccCCCCCCchhhhhccccchhhcC
Confidence            99999      999999999999999999999877 5789999999999999764333221110    000        0


Q ss_pred             --CCceeeeecCCCcceeeEEEccCCCeEEEEecCCCCCCCCCCeEEEEEccccccCChhhHhHhhhcccceEEEeeeCC
Q 021657          232 --PAGLFFQHAGHRDKVVDFHWNASDPWTVVSVSDDCDSTGGGGTLQIWRMSDLIYRPQDEVLAELEKFKAHVISCTSKP  309 (309)
Q Consensus       232 --~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~s~d~~s~~~dg~v~vw~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~P  309 (309)
                        -.-..+.+.||...|+-++|+|.-+.++        ||+.|..|++|.++..    ..-.+-+..+|.+.|.++.|||
T Consensus       193 ~~DaVVK~VLEGHDRGVNwaAfhpTlpliV--------SG~DDRqVKlWrmnet----KaWEvDtcrgH~nnVssvlfhp  260 (1202)
T KOG0292|consen  193 QTDAVVKHVLEGHDRGVNWAAFHPTLPLIV--------SGADDRQVKLWRMNET----KAWEVDTCRGHYNNVSSVLFHP  260 (1202)
T ss_pred             CcCeeeeeeecccccccceEEecCCcceEE--------ecCCcceeeEEEeccc----cceeehhhhcccCCcceEEecC
Confidence              1113356789999999999999888555        5666699999999842    2334567889999999999998

>KOG0293 consensus WD40 repeat-containing protein [Function unknown]

Probab=100.00  E-value=1.2e-33  Score=213.41  Aligned_cols=245  Identities=21%  Similarity=0.355  Sum_probs=187.9

Q ss_pred             cccCCCCCcceEEEEECCCCCEEEEecCCCcEEEEeCCccccccccCCccccccCCCCceeecCCCCCCCCcccCCCCCc
Q 021657            2 EILTGHQDNAEFALAMCPTEPYVLSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSV   81 (309)
Q Consensus         2 ~~l~~H~~~~V~~~~~~~~~~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (309)
                      ++|..|++ .|+-+.||++|++|||++.|.+..+|++...                                     ...
T Consensus       218 qil~~htd-EVWfl~FS~nGkyLAsaSkD~Taiiw~v~~d-------------------------------------~~~  259 (519)
T KOG0293|consen  218 QILQDHTD-EVWFLQFSHNGKYLASASKDSTAIIWIVVYD-------------------------------------VHF  259 (519)
T ss_pred             hhHhhCCC-cEEEEEEcCCCeeEeeccCCceEEEEEEecC-------------------------------------cce
Confidence            57889999 9999999999999999999999999998632                                     113


Q ss_pred             CcccccccccCCeEEEEEecCCCcEEEEEcCCCeEEEEEcCCCCcceEEEe-eccCCceeEEEeccCCCCeEEEEcCCCc
Q 021657           82 GPRGIYNGHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPVIKVE-KAHDADLHCVDWNPLDDNLILTGSADNS  160 (309)
Q Consensus        82 ~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~-~~~~~~v~~~~~~~~~~~~l~~~~~dg~  160 (309)
                      +...++.+|..+|.-+.|+||+ ++|++|+.|..+.+||+.++..  ...+ .++...+.+++|.| ++..+++|+.|+.
T Consensus       260 kl~~tlvgh~~~V~yi~wSPDd-ryLlaCg~~e~~~lwDv~tgd~--~~~y~~~~~~S~~sc~W~p-Dg~~~V~Gs~dr~  335 (519)
T KOG0293|consen  260 KLKKTLVGHSQPVSYIMWSPDD-RYLLACGFDEVLSLWDVDTGDL--RHLYPSGLGFSVSSCAWCP-DGFRFVTGSPDRT  335 (519)
T ss_pred             eeeeeeecccCceEEEEECCCC-CeEEecCchHheeeccCCcchh--hhhcccCcCCCcceeEEcc-CCceeEecCCCCc
Confidence            4567888999999999999998 8899999999999999999983  3332 23567899999999 9999999999999


Q ss_pred             EEEEecCCCCCCCCCCceeeeccCC-CCeeEEEEecCCCcEEEEecCCCcEEEEeCCccccc---ccCCCCCc-----C-
Q 021657          161 VRMFDRRNLTSNGVGSPINKFEGHS-AAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKK---VEQGPRTT-----N-  230 (309)
Q Consensus       161 i~i~d~~~~~~~~~~~~~~~~~~~~-~~v~~~~~~~~~~~l~~~~~~dg~i~iwd~~~~~~~---~~~~~~~~-----~-  230 (309)
                      |..||+.       +..+...++.. ..|.+++..+||++++ +.+.|..|++|+....-..   .++.+-.+     . 
T Consensus       336 i~~wdlD-------gn~~~~W~gvr~~~v~dlait~Dgk~vl-~v~~d~~i~l~~~e~~~dr~lise~~~its~~iS~d~  407 (519)
T KOG0293|consen  336 IIMWDLD-------GNILGNWEGVRDPKVHDLAITYDGKYVL-LVTVDKKIRLYNREARVDRGLISEEQPITSFSISKDG  407 (519)
T ss_pred             EEEecCC-------cchhhcccccccceeEEEEEcCCCcEEE-EEecccceeeechhhhhhhccccccCceeEEEEcCCC
Confidence            9999998       45566665543 4589999999999977 5557999999998762221   01000000     0 


Q ss_pred             -----------------CCCceeeeecCCCc--ceeeEEEccCCCeEEEEecCCCCCCCCCCeEEEEEccccccCChhhH
Q 021657          231 -----------------YPAGLFFQHAGHRD--KVVDFHWNASDPWTVVSVSDDCDSTGGGGTLQIWRMSDLIYRPQDEV  291 (309)
Q Consensus       231 -----------------~~~~~~~~~~~~~~--~v~~~~~~~~~~~~~~s~s~d~~s~~~dg~v~vw~~~~~~~~~~~~~  291 (309)
                                       .....+..+.||..  .+..-+|--.+..++++|       +.|+.|+||+..      ++++
T Consensus       408 k~~LvnL~~qei~LWDl~e~~lv~kY~Ghkq~~fiIrSCFgg~~~~fiaSG-------SED~kvyIWhr~------sgkl  474 (519)
T KOG0293|consen  408 KLALVNLQDQEIHLWDLEENKLVRKYFGHKQGHFIIRSCFGGGNDKFIASG-------SEDSKVYIWHRI------SGKL  474 (519)
T ss_pred             cEEEEEcccCeeEEeecchhhHHHHhhcccccceEEEeccCCCCcceEEec-------CCCceEEEEEcc------CCce
Confidence                             01112334445543  344445554444566644       455999999999      8999


Q ss_pred             hHhhhcccceEEEeeeCC
Q 021657          292 LAELEKFKAHVISCTSKP  309 (309)
Q Consensus       292 ~~~~~~h~~~v~~~~~~P  309 (309)
                      +.++.||...|.+|+|+|
T Consensus       475 l~~LsGHs~~vNcVswNP  492 (519)
T KOG0293|consen  475 LAVLSGHSKTVNCVSWNP  492 (519)
T ss_pred             eEeecCCcceeeEEecCC
Confidence            999999999999999998

>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]

Probab=100.00  E-value=6.1e-33  Score=215.46  Aligned_cols=265  Identities=17%  Similarity=0.214  Sum_probs=199.7

Q ss_pred             CCCCcceEEEEECCCCCEEEEecCCCcEEEEeCCccccccccCCccccccCCCCceee------cCCCCCCCCcccCCCC
Q 021657            6 GHQDNAEFALAMCPTEPYVLSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIK------QSPKPGDGNDKAADGP   79 (309)
Q Consensus         6 ~H~~~~V~~~~~~~~~~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~   79 (309)
                      +|++ .|++++|+||++.++|++.|.+++|||+.+.............   ....+-.      +..-...+.+.+++..
T Consensus       233 aHkG-sIfalsWsPDs~~~~T~SaDkt~KIWdVs~~slv~t~~~~~~v---~dqqvG~lWqkd~lItVSl~G~in~ln~~  308 (603)
T KOG0318|consen  233 AHKG-SIFALSWSPDSTQFLTVSADKTIKIWDVSTNSLVSTWPMGSTV---EDQQVGCLWQKDHLITVSLSGTINYLNPS  308 (603)
T ss_pred             Cccc-cEEEEEECCCCceEEEecCCceEEEEEeeccceEEEeecCCch---hceEEEEEEeCCeEEEEEcCcEEEEeccc
Confidence            8999 7999999999999999999999999999987444433322221   1111111      1222346778888888


Q ss_pred             CcCcccccccccCCeEEEEEecCCCcEEEEEcCCCeEEEEEcCCCCcc--------------------------------
Q 021657           80 SVGPRGIYNGHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSP--------------------------------  127 (309)
Q Consensus        80 ~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~--------------------------------  127 (309)
                      ...++..+.+|...|+++..+|++ .+|++|+.||.|.-||..++...                                
T Consensus       309 d~~~~~~i~GHnK~ITaLtv~~d~-~~i~SgsyDG~I~~W~~~~g~~~~~~g~~h~nqI~~~~~~~~~~~~t~g~Dd~l~  387 (603)
T KOG0318|consen  309 DPSVLKVISGHNKSITALTVSPDG-KTIYSGSYDGHINSWDSGSGTSDRLAGKGHTNQIKGMAASESGELFTIGWDDTLR  387 (603)
T ss_pred             CCChhheecccccceeEEEEcCCC-CEEEeeccCceEEEEecCCccccccccccccceEEEEeecCCCcEEEEecCCeEE
Confidence            888999999999999999999999 89999999999999998654210                                


Q ss_pred             ---------------------------------------eEEEeec--------cCCceeEEEeccCCCCeEEEEcCCCc
Q 021657          128 ---------------------------------------VIKVEKA--------HDADLHCVDWNPLDDNLILTGSADNS  160 (309)
Q Consensus       128 ---------------------------------------~~~~~~~--------~~~~v~~~~~~~~~~~~l~~~~~dg~  160 (309)
                                                             -+..+..        -.-...+++++| ++..+++|+.|+.
T Consensus       388 ~~~~~~~~~t~~~~~~lg~QP~~lav~~d~~~avv~~~~~iv~l~~~~~~~~~~~~y~~s~vAv~~-~~~~vaVGG~Dgk  466 (603)
T KOG0318|consen  388 VISLKDNGYTKSEVVKLGSQPKGLAVLSDGGTAVVACISDIVLLQDQTKVSSIPIGYESSAVAVSP-DGSEVAVGGQDGK  466 (603)
T ss_pred             EEecccCcccccceeecCCCceeEEEcCCCCEEEEEecCcEEEEecCCcceeeccccccceEEEcC-CCCEEEEecccce
Confidence                                                   0000000        112345888899 9999999999999


Q ss_pred             EEEEecCCCCCCCCCCceeeeccCCCCeeEEEEecCCCcEEEEecCCCcEEEEeCCcccccccCCCCCcCCCCceeeeec
Q 021657          161 VRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHA  240 (309)
Q Consensus       161 i~i~d~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~  240 (309)
                      |++|.+....    .........|.++|++++++||+.+ ||+|...+.+.+||+.....              ......
T Consensus       467 vhvysl~g~~----l~ee~~~~~h~a~iT~vaySpd~~y-la~~Da~rkvv~yd~~s~~~--------------~~~~w~  527 (603)
T KOG0318|consen  467 VHVYSLSGDE----LKEEAKLLEHRAAITDVAYSPDGAY-LAAGDASRKVVLYDVASREV--------------KTNRWA  527 (603)
T ss_pred             EEEEEecCCc----ccceeeeecccCCceEEEECCCCcE-EEEeccCCcEEEEEcccCce--------------ecceee
Confidence            9999998632    2233345668999999999999997 68999999999999987222              122334


Q ss_pred             CCCcceeeEEEccCCCeEEEEecCCCCCCCCCCeEEEEEccccccCChhhHhHhhhcccceEEEeeeC
Q 021657          241 GHRDKVVDFHWNASDPWTVVSVSDDCDSTGGGGTLQIWRMSDLIYRPQDEVLAELEKFKAHVISCTSK  308 (309)
Q Consensus       241 ~~~~~v~~~~~~~~~~~~~~s~s~d~~s~~~dg~v~vw~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~  308 (309)
                      -|...|.+++|+|++. ++|++       +.|-.|.||+++.     ..+.+....+|...|..+.|-
T Consensus       528 FHtakI~~~aWsP~n~-~vATG-------SlDt~Viiysv~k-----P~~~i~iknAH~~gVn~v~wl  582 (603)
T KOG0318|consen  528 FHTAKINCVAWSPNNK-LVATG-------SLDTNVIIYSVKK-----PAKHIIIKNAHLGGVNSVAWL  582 (603)
T ss_pred             eeeeeEEEEEeCCCce-EEEec-------cccceEEEEEccC-----hhhheEeccccccCceeEEEe
Confidence            5999999999999765 56654       4559999999995     334466667899999999884

>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]

Probab=100.00  E-value=1.5e-33  Score=209.51  Aligned_cols=266  Identities=17%  Similarity=0.322  Sum_probs=212.9

Q ss_pred             CcccCCCCCcceEEEEECCCCCEEEEecCCCcEEEEeCCccccccc--cCCccccccCCCCceeecCCCCCCCCcccCCC
Q 021657            1 MEILTGHQDNAEFALAMCPTEPYVLSGGKDKSVVLWSIQDHITSSA--TDPATAKSAGSSGSIIKQSPKPGDGNDKAADG   78 (309)
Q Consensus         1 l~~l~~H~~~~V~~~~~~~~~~~l~t~~~dg~i~vwd~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   78 (309)
                      +.+|..|++ .|.+++.+|+.++++||+.|....||++.++.....  .+..............+++++.-.+.+.+|..
T Consensus        57 ~~tF~~H~~-svFavsl~P~~~l~aTGGgDD~AflW~~~~ge~~~eltgHKDSVt~~~FshdgtlLATGdmsG~v~v~~~  135 (399)
T KOG0296|consen   57 LVTFDKHTD-SVFAVSLHPNNNLVATGGGDDLAFLWDISTGEFAGELTGHKDSVTCCSFSHDGTLLATGDMSGKVLVFKV  135 (399)
T ss_pred             eeehhhcCC-ceEEEEeCCCCceEEecCCCceEEEEEccCCcceeEecCCCCceEEEEEccCceEEEecCCCccEEEEEc
Confidence            357899999 899999999999999999999999999998853222  22222233344444556777788899999999


Q ss_pred             CCcCcccccccccCCeEEEEEecCCCcEEEEEcCCCeEEEEEcCCCCcceEEEeeccCCceeEEEeccCCCCeEEEEcCC
Q 021657           79 PSVGPRGIYNGHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSAD  158 (309)
Q Consensus        79 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d  158 (309)
                      .++.....+..--..|.-+.|+|.+ .+|+.|+.||.+.+|.+.++.  ..+.+.+|..++++=.|.| +|+.++++..|
T Consensus       136 stg~~~~~~~~e~~dieWl~WHp~a-~illAG~~DGsvWmw~ip~~~--~~kv~~Gh~~~ct~G~f~p-dGKr~~tgy~d  211 (399)
T KOG0296|consen  136 STGGEQWKLDQEVEDIEWLKWHPRA-HILLAGSTDGSVWMWQIPSQA--LCKVMSGHNSPCTCGEFIP-DGKRILTGYDD  211 (399)
T ss_pred             ccCceEEEeecccCceEEEEecccc-cEEEeecCCCcEEEEECCCcc--eeeEecCCCCCcccccccC-CCceEEEEecC
Confidence            9998888887667788999999987 899999999999999998865  6888999999999999999 89999999999


Q ss_pred             CcEEEEecCCCCCCCCCCceeeecc---------------------------------------------------CCCC
Q 021657          159 NSVRMFDRRNLTSNGVGSPINKFEG---------------------------------------------------HSAA  187 (309)
Q Consensus       159 g~i~i~d~~~~~~~~~~~~~~~~~~---------------------------------------------------~~~~  187 (309)
                      |+|++||+.+      +.++..+..                                                   +...
T Consensus       212 gti~~Wn~kt------g~p~~~~~~~e~~~~~~~~~~~~~~~~~~g~~e~~~~~~~~~sgKVv~~~n~~~~~l~~~~e~~  285 (399)
T KOG0296|consen  212 GTIIVWNPKT------GQPLHKITQAEGLELPCISLNLAGSTLTKGNSEGVACGVNNGSGKVVNCNNGTVPELKPSQEEL  285 (399)
T ss_pred             ceEEEEecCC------CceeEEecccccCcCCccccccccceeEeccCCccEEEEccccceEEEecCCCCccccccchhh
Confidence            9999999998      555544430                                                   1111


Q ss_pred             eeEE---EEecCCCcEEEEecCCCcEEEEeCCcccccccCCCCCcCCCCceeeeecCCCcceeeEEEccCCCeEEEEecC
Q 021657          188 VLCV---QWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKVVDFHWNASDPWTVVSVSD  264 (309)
Q Consensus       188 v~~~---~~~~~~~~l~~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~s~  264 (309)
                      +.++   .++..-+ |+|+|+.||+|.|||+...                .+...-.|..+|+.+.|.+ ..+++     
T Consensus       286 ~esve~~~~ss~lp-L~A~G~vdG~i~iyD~a~~----------------~~R~~c~he~~V~~l~w~~-t~~l~-----  342 (399)
T KOG0296|consen  286 DESVESIPSSSKLP-LAACGSVDGTIAIYDLAAS----------------TLRHICEHEDGVTKLKWLN-TDYLL-----  342 (399)
T ss_pred             hhhhhhcccccccc-hhhcccccceEEEEecccc----------------hhheeccCCCceEEEEEcC-cchhe-----
Confidence            1222   2222334 6789999999999999872                1223346888999999999 67777     


Q ss_pred             CCCCCCCCCeEEEEEccccccCChhhHhHhhhcccceEEEeeeCC
Q 021657          265 DCDSTGGGGTLQIWRMSDLIYRPQDEVLAELEKFKAHVISCTSKP  309 (309)
Q Consensus       265 d~~s~~~dg~v~vw~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~P  309 (309)
                         +++.||.|+.||.+      +++++.++.+|..+|.+.+.+|
T Consensus       343 ---t~c~~g~v~~wDaR------tG~l~~~y~GH~~~Il~f~ls~  378 (399)
T KOG0296|consen  343 ---TACANGKVRQWDAR------TGQLKFTYTGHQMGILDFALSP  378 (399)
T ss_pred             ---eeccCceEEeeecc------ccceEEEEecCchheeEEEEcC
Confidence               66777999999999      8999999999999999999876

>KOG1407 consensus WD40 repeat protein [Function unknown]

Probab=100.00  E-value=3.4e-33  Score=198.93  Aligned_cols=234  Identities=19%  Similarity=0.390  Sum_probs=195.0

Q ss_pred             cccCCCCCcceEEEEECCCCCEEEEecCCCcEEEEeCCccccccccCCccccccCCCCceeecCCCCCCCCcccCCCCCc
Q 021657            2 EILTGHQDNAEFALAMCPTEPYVLSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSV   81 (309)
Q Consensus         2 ~~l~~H~~~~V~~~~~~~~~~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (309)
                      +.+++|.. .|.+++|+.+|..|++|+.|+++++|+++....                                      
T Consensus        14 r~~~~~~~-~v~Sv~wn~~g~~lasgs~dktv~v~n~e~~r~--------------------------------------   54 (313)
T KOG1407|consen   14 RELQGHVQ-KVHSVAWNCDGTKLASGSFDKTVSVWNLERDRF--------------------------------------   54 (313)
T ss_pred             HHhhhhhh-cceEEEEcccCceeeecccCCceEEEEecchhh--------------------------------------
Confidence            35788999 899999999999999999999999999985311                                      


Q ss_pred             CcccccccccCCeEEEEEecCCCcEEEEEcCCCeEEEEEcCCCCcceEEEeeccCCceeEEEeccCCCCeEEEEcCCCcE
Q 021657           82 GPRGIYNGHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSV  161 (309)
Q Consensus        82 ~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i  161 (309)
                      .......+|.+.|..++|+|..+.+|++++.|.+|++||.+.++  +....... ..-.-+.|+| ++.+++++..|..|
T Consensus        55 ~~~~~~~gh~~svdql~w~~~~~d~~atas~dk~ir~wd~r~~k--~~~~i~~~-~eni~i~wsp-~g~~~~~~~kdD~i  130 (313)
T KOG1407|consen   55 RKELVYRGHTDSVDQLCWDPKHPDLFATASGDKTIRIWDIRSGK--CTARIETK-GENINITWSP-DGEYIAVGNKDDRI  130 (313)
T ss_pred             hhhhcccCCCcchhhheeCCCCCcceEEecCCceEEEEEeccCc--EEEEeecc-CcceEEEEcC-CCCEEEEecCcccE
Confidence            11234568999999999999988999999999999999999988  44444333 3344678999 99999999999999


Q ss_pred             EEEecCCCCC-----------------------------------CCCCCceeeeccCCCCeeEEEEecCCCcEEEEecC
Q 021657          162 RMFDRRNLTS-----------------------------------NGVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAE  206 (309)
Q Consensus       162 ~i~d~~~~~~-----------------------------------~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~  206 (309)
                      .+.|.++.+.                                   -+..+++..++.|.....||.|+|+|++ ||+|+.
T Consensus       131 t~id~r~~~~~~~~~~~~e~ne~~w~~~nd~Fflt~GlG~v~ILsypsLkpv~si~AH~snCicI~f~p~Gry-fA~GsA  209 (313)
T KOG1407|consen  131 TFIDARTYKIVNEEQFKFEVNEISWNNSNDLFFLTNGLGCVEILSYPSLKPVQSIKAHPSNCICIEFDPDGRY-FATGSA  209 (313)
T ss_pred             EEEEecccceeehhcccceeeeeeecCCCCEEEEecCCceEEEEeccccccccccccCCcceEEEEECCCCce-Eeeccc
Confidence            9999887421                                   1226777888899999999999999997 789999


Q ss_pred             CCcEEEEeCCcccccccCCCCCcCCCCceeeeecCCCcceeeEEEccCCCeEEEEecCCCCCCCCCCeEEEEEccccccC
Q 021657          207 DGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKVVDFHWNASDPWTVVSVSDDCDSTGGGGTLQIWRMSDLIYR  286 (309)
Q Consensus       207 dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~s~d~~s~~~dg~v~vw~~~~~~~~  286 (309)
                      |..+.+||+..               ..+...+.-+.-+|..+.|+.++.+ +|       +|+.|-.|-|=++.     
T Consensus       210 DAlvSLWD~~E---------------LiC~R~isRldwpVRTlSFS~dg~~-lA-------SaSEDh~IDIA~ve-----  261 (313)
T KOG1407|consen  210 DALVSLWDVDE---------------LICERCISRLDWPVRTLSFSHDGRM-LA-------SASEDHFIDIAEVE-----  261 (313)
T ss_pred             cceeeccChhH---------------hhhheeeccccCceEEEEeccCcce-ee-------ccCccceEEeEecc-----
Confidence            99999999987               5566777888899999999998875 55       55555899888888     


Q ss_pred             ChhhHhHhhhcccceEEEeeeCC
Q 021657          287 PQDEVLAELEKFKAHVISCTSKP  309 (309)
Q Consensus       287 ~~~~~~~~~~~h~~~v~~~~~~P  309 (309)
                       ++..+.+++ +.++...|+|||
T Consensus       262 -tGd~~~eI~-~~~~t~tVAWHP  282 (313)
T KOG1407|consen  262 -TGDRVWEIP-CEGPTFTVAWHP  282 (313)
T ss_pred             -cCCeEEEee-ccCCceeEEecC
Confidence             788888887 889999999998

>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=100.00  E-value=4e-33  Score=214.50  Aligned_cols=225  Identities=20%  Similarity=0.354  Sum_probs=191.7

Q ss_pred             CCCCCcceEEEEECCCCCEEEEecCCCcEEEEeCCccccccccCCccccccCCCCceeecCCCCCCCCcccCCCCCcCcc
Q 021657            5 TGHQDNAEFALAMCPTEPYVLSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPR   84 (309)
Q Consensus         5 ~~H~~~~V~~~~~~~~~~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   84 (309)
                      ...++ .|++++|-.||++||.|...|.|+|+|+.+                                        ...+
T Consensus        65 srFk~-~v~s~~fR~DG~LlaaGD~sG~V~vfD~k~----------------------------------------r~iL  103 (487)
T KOG0310|consen   65 SRFKD-VVYSVDFRSDGRLLAAGDESGHVKVFDMKS----------------------------------------RVIL  103 (487)
T ss_pred             Hhhcc-ceeEEEeecCCeEEEccCCcCcEEEecccc----------------------------------------HHHH
Confidence            33455 789999999999999999999999999652                                        2346


Q ss_pred             cccccccCCeEEEEEecCCCcEEEEEcCCCeEEEEEcCCCCcceEEEeeccCCceeEEEeccCCCCeEEEEcCCCcEEEE
Q 021657           85 GIYNGHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMF  164 (309)
Q Consensus        85 ~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~  164 (309)
                      ..+.+|+.+|..+.|+|++...|++|++|+.+++||+.+..  ....+.+|.+.|.|.+|+|.++..+++|+.||.|++|
T Consensus       104 R~~~ah~apv~~~~f~~~d~t~l~s~sDd~v~k~~d~s~a~--v~~~l~~htDYVR~g~~~~~~~hivvtGsYDg~vrl~  181 (487)
T KOG0310|consen  104 RQLYAHQAPVHVTKFSPQDNTMLVSGSDDKVVKYWDLSTAY--VQAELSGHTDYVRCGDISPANDHIVVTGSYDGKVRLW  181 (487)
T ss_pred             HHHhhccCceeEEEecccCCeEEEecCCCceEEEEEcCCcE--EEEEecCCcceeEeeccccCCCeEEEecCCCceEEEE
Confidence            77889999999999999998999999999999999999887  5668899999999999999778899999999999999


Q ss_pred             ecCCCCCCCCCCceeeeccCCCCeeEEEEecCCCcEEEEecCCCcEEEEeCCcccccccCCCCCcCCCCceeeeecCCCc
Q 021657          165 DRRNLTSNGVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRD  244 (309)
Q Consensus       165 d~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  244 (309)
                      |.+..     ...+.++. |..+|.++.+-|.|. ++|+++ ...+++||+-..++              .+..+..|..
T Consensus       182 DtR~~-----~~~v~eln-hg~pVe~vl~lpsgs-~iasAg-Gn~vkVWDl~~G~q--------------ll~~~~~H~K  239 (487)
T KOG0310|consen  182 DTRSL-----TSRVVELN-HGCPVESVLALPSGS-LIASAG-GNSVKVWDLTTGGQ--------------LLTSMFNHNK  239 (487)
T ss_pred             EeccC-----CceeEEec-CCCceeeEEEcCCCC-EEEEcC-CCeEEEEEecCCce--------------ehhhhhcccc
Confidence            99983     36677776 889999999999988 466776 56899999986333              3344555999


Q ss_pred             ceeeEEEccCCCeEEEEecCCCCCCCCCCeEEEEEccccccCChhhHhHhhhcccceEEEeeeCC
Q 021657          245 KVVDFHWNASDPWTVVSVSDDCDSTGGGGTLQIWRMSDLIYRPQDEVLAELEKFKAHVISCTSKP  309 (309)
Q Consensus       245 ~v~~~~~~~~~~~~~~s~s~d~~s~~~dg~v~vw~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~P  309 (309)
                      .|+++.+..++..|+        |||-|+.|++||+.      +-+.+..+. ..++|.+++.+|
T Consensus       240 tVTcL~l~s~~~rLl--------S~sLD~~VKVfd~t------~~Kvv~s~~-~~~pvLsiavs~  289 (487)
T KOG0310|consen  240 TVTCLRLASDSTRLL--------SGSLDRHVKVFDTT------NYKVVHSWK-YPGPVLSIAVSP  289 (487)
T ss_pred             eEEEEEeecCCceEe--------ecccccceEEEEcc------ceEEEEeee-cccceeeEEecC
Confidence            999999999888877        88888999999988      566666665 678999998876

>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]

Probab=100.00  E-value=9.6e-33  Score=206.25  Aligned_cols=231  Identities=23%  Similarity=0.461  Sum_probs=182.2

Q ss_pred             ccCCCCCcceEEEEECCCCCEEEEecCCCcEEEEeCCccccccccCCccccccCCCCceeecCCCCCCCCcccCCCCCcC
Q 021657            3 ILTGHQDNAEFALAMCPTEPYVLSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVG   82 (309)
Q Consensus         3 ~l~~H~~~~V~~~~~~~~~~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   82 (309)
                      .-+||+. +|-+++..++|..+++|+.|..|+||+........ ......              ......-+--...+..
T Consensus       188 ~~~GHk~-~V~sVsv~~sgtr~~SgS~D~~lkiWs~~~~~~~~-~E~~s~--------------~rrk~~~~~~~~~~r~  251 (423)
T KOG0313|consen  188 VCRGHKR-SVDSVSVDSSGTRFCSGSWDTMLKIWSVETDEEDE-LESSSN--------------RRRKKQKREKEGGTRT  251 (423)
T ss_pred             Hhccccc-ceeEEEecCCCCeEEeecccceeeecccCCCcccc-ccccch--------------hhhhhhhhhhcccccC
Confidence            3459999 89999999999999999999999999943321100 000000              0000001111223456


Q ss_pred             cccccccccCCeEEEEEecCCCcEEEEEcCCCeEEEEEcCCCCcceEEEeeccCCceeEEEeccCCCCeEEEEcCCCcEE
Q 021657           83 PRGIYNGHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVR  162 (309)
Q Consensus        83 ~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~  162 (309)
                      ++..+.+|+++|.++.|++.  ..+++++.|.+|+.||+.++.  ....+. ....+.++.++| ..++|++|+.|..|+
T Consensus       252 P~vtl~GHt~~Vs~V~w~d~--~v~yS~SwDHTIk~WDletg~--~~~~~~-~~ksl~~i~~~~-~~~Ll~~gssdr~ir  325 (423)
T KOG0313|consen  252 PLVTLEGHTEPVSSVVWSDA--TVIYSVSWDHTIKVWDLETGG--LKSTLT-TNKSLNCISYSP-LSKLLASGSSDRHIR  325 (423)
T ss_pred             ceEEecccccceeeEEEcCC--CceEeecccceEEEEEeeccc--ceeeee-cCcceeEeeccc-ccceeeecCCCCcee
Confidence            77889999999999999984  579999999999999999988  444443 467899999999 999999999999999


Q ss_pred             EEecCCCCCCCCCCceeeeccCCCCeeEEEEecCCCcEEEEecCCCcEEEEeCCcccccccCCCCCcCCCCceeeeecCC
Q 021657          163 MFDRRNLTSNGVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGH  242 (309)
Q Consensus       163 i~d~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~  242 (309)
                      +||.|+...   .-..+++.+|++.|.++.|+|...++|++|+.|+++++||+|..              ..+++.+.+|
T Consensus       326 l~DPR~~~g---s~v~~s~~gH~nwVssvkwsp~~~~~~~S~S~D~t~klWDvRS~--------------k~plydI~~h  388 (423)
T KOG0313|consen  326 LWDPRTGDG---SVVSQSLIGHKNWVSSVKWSPTNEFQLVSGSYDNTVKLWDVRST--------------KAPLYDIAGH  388 (423)
T ss_pred             ecCCCCCCC---ceeEEeeecchhhhhheecCCCCceEEEEEecCCeEEEEEeccC--------------CCcceeeccC
Confidence            999998642   34567889999999999999999999999999999999999983              2367889999


Q ss_pred             CcceeeEEEccCCCeEEEEecCCCCCCCCCCeEEEEEcc
Q 021657          243 RDKVVDFHWNASDPWTVVSVSDDCDSTGGGGTLQIWRMS  281 (309)
Q Consensus       243 ~~~v~~~~~~~~~~~~~~s~s~d~~s~~~dg~v~vw~~~  281 (309)
                      ...|.++.|+. +..++        |||.|++|+++.-.
T Consensus       389 ~DKvl~vdW~~-~~~Iv--------SGGaD~~l~i~~~~  418 (423)
T KOG0313|consen  389 NDKVLSVDWNE-GGLIV--------SGGADNKLRIFKGS  418 (423)
T ss_pred             CceEEEEeccC-CceEE--------eccCcceEEEeccc
Confidence            99999999996 44444        77777999999876

>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]

Probab=100.00  E-value=5.6e-34  Score=211.09  Aligned_cols=200  Identities=21%  Similarity=0.283  Sum_probs=174.6

Q ss_pred             cCCCCCCCCcccCCCCCcCcccccccccCCeEEEEEecCCCcEEEEEcCCCeEEEEEcCCCCcceEEEeeccCCceeEEE
Q 021657           64 QSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVD  143 (309)
Q Consensus        64 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~  143 (309)
                      +..+..+..+.+|+..+...+..+.+|++.|.|+.|..   +.+++|+.|.+|++||+++++  ....+..|...|..+.
T Consensus       210 iVSGlrDnTikiWD~n~~~c~~~L~GHtGSVLCLqyd~---rviisGSSDsTvrvWDv~tge--~l~tlihHceaVLhlr  284 (499)
T KOG0281|consen  210 IVSGLRDNTIKIWDKNSLECLKILTGHTGSVLCLQYDE---RVIVSGSSDSTVRVWDVNTGE--PLNTLIHHCEAVLHLR  284 (499)
T ss_pred             hhcccccCceEEeccccHHHHHhhhcCCCcEEeeeccc---eEEEecCCCceEEEEeccCCc--hhhHHhhhcceeEEEE
Confidence            44567788999999999999999999999999999954   689999999999999999999  7888889999999999


Q ss_pred             eccCCCCeEEEEcCCCcEEEEecCCCCCCCCCCceeeeccCCCCeeEEEEecCCCcEEEEecCCCcEEEEeCCccccccc
Q 021657          144 WNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVE  223 (309)
Q Consensus       144 ~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~dg~i~iwd~~~~~~~~~  223 (309)
                      |+   ..++++++.|.+|.+||+..+..   -.+.+.+.+|...|+.+.|+..   ++++++.|.+|++|++.+      
T Consensus       285 f~---ng~mvtcSkDrsiaVWdm~sps~---it~rrVLvGHrAaVNvVdfd~k---yIVsASgDRTikvW~~st------  349 (499)
T KOG0281|consen  285 FS---NGYMVTCSKDRSIAVWDMASPTD---ITLRRVLVGHRAAVNVVDFDDK---YIVSASGDRTIKVWSTST------  349 (499)
T ss_pred             Ee---CCEEEEecCCceeEEEeccCchH---HHHHHHHhhhhhheeeeccccc---eEEEecCCceEEEEeccc------
Confidence            95   58999999999999999998542   3455677899999999999754   467999999999999998      


Q ss_pred             CCCCCcCCCCceeeeecCCCcceeeEEEccCCCeEEEEecCCCCCCCCCCeEEEEEccccccCChhhHhHhhhcccceEE
Q 021657          224 QGPRTTNYPAGLFFQHAGHRDKVVDFHWNASDPWTVVSVSDDCDSTGGGGTLQIWRMSDLIYRPQDEVLAELEKFKAHVI  303 (309)
Q Consensus       224 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~s~d~~s~~~dg~v~vw~~~~~~~~~~~~~~~~~~~h~~~v~  303 (309)
                               ..++..+.+|...|.++.+.   ..+++       +|+.|.+|++||+.      .+.++..++||++-|.
T Consensus       350 ---------~efvRtl~gHkRGIAClQYr---~rlvV-------SGSSDntIRlwdi~------~G~cLRvLeGHEeLvR  404 (499)
T KOG0281|consen  350 ---------CEFVRTLNGHKRGIACLQYR---DRLVV-------SGSSDNTIRLWDIE------CGACLRVLEGHEELVR  404 (499)
T ss_pred             ---------eeeehhhhcccccceehhcc---CeEEE-------ecCCCceEEEEecc------ccHHHHHHhchHHhhh
Confidence                     66788899999999888875   45666       55555999999999      8999999999999999


Q ss_pred             EeeeC
Q 021657          304 SCTSK  308 (309)
Q Consensus       304 ~~~~~  308 (309)
                      ++.|.
T Consensus       405 ciRFd  409 (499)
T KOG0281|consen  405 CIRFD  409 (499)
T ss_pred             heeec
Confidence            98875

>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]

Probab=100.00  E-value=2.2e-32  Score=198.43  Aligned_cols=244  Identities=21%  Similarity=0.336  Sum_probs=202.6

Q ss_pred             ccCCCCCcceEEEEECCCCCEEEEecCCCcEEEEeCCccccccccCCcccc---ccCCCCceeecCCCCCCCCcccCCCC
Q 021657            3 ILTGHQDNAEFALAMCPTEPYVLSGGKDKSVVLWSIQDHITSSATDPATAK---SAGSSGSIIKQSPKPGDGNDKAADGP   79 (309)
Q Consensus         3 ~l~~H~~~~V~~~~~~~~~~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~   79 (309)
                      +++||++ +|..+.|.+|++.+++++.|++|+.||++++............   ..........+..+..++.+++||.+
T Consensus        85 ~lkgHsg-AVM~l~~~~d~s~i~S~gtDk~v~~wD~~tG~~~rk~k~h~~~vNs~~p~rrg~~lv~SgsdD~t~kl~D~R  163 (338)
T KOG0265|consen   85 VLKGHSG-AVMELHGMRDGSHILSCGTDKTVRGWDAETGKRIRKHKGHTSFVNSLDPSRRGPQLVCSGSDDGTLKLWDIR  163 (338)
T ss_pred             eeccccc-eeEeeeeccCCCEEEEecCCceEEEEecccceeeehhccccceeeecCccccCCeEEEecCCCceEEEEeec
Confidence            6789999 9999999999999999999999999999999666555443322   11233344566677889999999999


Q ss_pred             CcCcccccccccCCeEEEEEecCCCcEEEEEcCCCeEEEEEcCCCCcceEEEeeccCCceeEEEeccCCCCeEEEEcCCC
Q 021657           80 SVGPRGIYNGHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADN  159 (309)
Q Consensus        80 ~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg  159 (309)
                      +...++.+. .+-+++++.|..++ ..+.+|+-|+.|++||++.+.  ....+.+|.++|+.+..+| ++.++.+-+.|.
T Consensus       164 ~k~~~~t~~-~kyqltAv~f~d~s-~qv~sggIdn~ikvWd~r~~d--~~~~lsGh~DtIt~lsls~-~gs~llsnsMd~  238 (338)
T KOG0265|consen  164 KKEAIKTFE-NKYQLTAVGFKDTS-DQVISGGIDNDIKVWDLRKND--GLYTLSGHADTITGLSLSR-YGSFLLSNSMDN  238 (338)
T ss_pred             ccchhhccc-cceeEEEEEecccc-cceeeccccCceeeeccccCc--ceEEeecccCceeeEEecc-CCCccccccccc
Confidence            998888775 35679999999988 679999999999999999888  7899999999999999999 999999999999


Q ss_pred             cEEEEecCCCCCCCCCCceeeeccCCC----CeeEEEEecCCCcEEEEecCCCcEEEEeCCcccccccCCCCCcCCCCce
Q 021657          160 SVRMFDRRNLTSNGVGSPINKFEGHSA----AVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGL  235 (309)
Q Consensus       160 ~i~i~d~~~~~~~~~~~~~~~~~~~~~----~v~~~~~~~~~~~l~~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~  235 (309)
                      ++++||++-....  .+++..+.++..    .....+|+|++++ +.+|+.|..+++||...               ...
T Consensus       239 tvrvwd~rp~~p~--~R~v~if~g~~hnfeknlL~cswsp~~~~-i~ags~dr~vyvwd~~~---------------r~~  300 (338)
T KOG0265|consen  239 TVRVWDVRPFAPS--QRCVKIFQGHIHNFEKNLLKCSWSPNGTK-ITAGSADRFVYVWDTTS---------------RRI  300 (338)
T ss_pred             eEEEEEecccCCC--CceEEEeecchhhhhhhcceeeccCCCCc-cccccccceEEEeeccc---------------ccE
Confidence            9999999964321  334666665532    3456789999997 57999999999999887               567


Q ss_pred             eeeecCCCcceeeEEEccCCCeEEEEecCCCCCCCCCCeEEEE
Q 021657          236 FFQHAGHRDKVVDFHWNASDPWTVVSVSDDCDSTGGGGTLQIW  278 (309)
Q Consensus       236 ~~~~~~~~~~v~~~~~~~~~~~~~~s~s~d~~s~~~dg~v~vw  278 (309)
                      ++.+.||...|+.+.|+|..+.++        +++.|.+|++=
T Consensus       301 lyklpGh~gsvn~~~Fhp~e~iil--------s~~sdk~i~lg  335 (338)
T KOG0265|consen  301 LYKLPGHYGSVNEVDFHPTEPIIL--------SCSSDKTIYLG  335 (338)
T ss_pred             EEEcCCcceeEEEeeecCCCcEEE--------EeccCceeEee
Confidence            899999999999999999988766        66666898863

>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=100.00  E-value=3.6e-32  Score=219.65  Aligned_cols=259  Identities=18%  Similarity=0.285  Sum_probs=208.5

Q ss_pred             cceEEEEECCCCCEEEEecCCCcEEEEeCCccccccccCC----ccccccCCCCceeecCCCCCCCCcccCCCCCcCccc
Q 021657           10 NAEFALAMCPTEPYVLSGGKDKSVVLWSIQDHITSSATDP----ATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRG   85 (309)
Q Consensus        10 ~~V~~~~~~~~~~~l~t~~~dg~i~vwd~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   85 (309)
                      ..|++.+|++....|++|-..|...+|++...........    .........+.-.. ......+.+.+|+......+.
T Consensus       266 ~kvtaa~fH~~t~~lvvgFssG~f~LyelP~f~lih~LSis~~~I~t~~~N~tGDWiA-~g~~klgQLlVweWqsEsYVl  344 (893)
T KOG0291|consen  266 SKVTAAAFHKGTNLLVVGFSSGEFGLYELPDFNLIHSLSISDQKILTVSFNSTGDWIA-FGCSKLGQLLVWEWQSESYVL  344 (893)
T ss_pred             cceeeeeccCCceEEEEEecCCeeEEEecCCceEEEEeecccceeeEEEecccCCEEE-EcCCccceEEEEEeeccceee
Confidence            3699999999999999999999999999987533322221    11112222222221 123346788999999999999


Q ss_pred             ccccccCCeEEEEEecCCCcEEEEEcCCCeEEEEEcCCCCcceEEEeeccCCceeEEEeccCCCCeEEEEcCCCcEEEEe
Q 021657           86 IYNGHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFD  165 (309)
Q Consensus        86 ~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d  165 (309)
                      ..++|...+++++++||| ++++||++||.|+|||...+-  +..++..|.+.|+.++|+. .++.+++.+.||+||.||
T Consensus       345 KQQgH~~~i~~l~YSpDg-q~iaTG~eDgKVKvWn~~Sgf--C~vTFteHts~Vt~v~f~~-~g~~llssSLDGtVRAwD  420 (893)
T KOG0291|consen  345 KQQGHSDRITSLAYSPDG-QLIATGAEDGKVKVWNTQSGF--CFVTFTEHTSGVTAVQFTA-RGNVLLSSSLDGTVRAWD  420 (893)
T ss_pred             eccccccceeeEEECCCC-cEEEeccCCCcEEEEeccCce--EEEEeccCCCceEEEEEEe-cCCEEEEeecCCeEEeee
Confidence            999999999999999999 899999999999999998888  8899999999999999999 999999999999999999


Q ss_pred             cCCCCCCCCCCceeeeccCC-CCeeEEEEecCCCcEEEEecCCC-cEEEEeCCcccccccCCCCCcCCCCceeeeecCCC
Q 021657          166 RRNLTSNGVGSPINKFEGHS-AAVLCVQWSPDKSSVFGSSAEDG-LLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHR  243 (309)
Q Consensus       166 ~~~~~~~~~~~~~~~~~~~~-~~v~~~~~~~~~~~l~~~~~~dg-~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  243 (309)
                      +..      .+..++|.... ....+++..|.|. ++.+|+.|. .|.+|++.+               ++++-.+.||.
T Consensus       421 lkR------YrNfRTft~P~p~QfscvavD~sGe-lV~AG~~d~F~IfvWS~qT---------------GqllDiLsGHE  478 (893)
T KOG0291|consen  421 LKR------YRNFRTFTSPEPIQFSCVAVDPSGE-LVCAGAQDSFEIFVWSVQT---------------GQLLDILSGHE  478 (893)
T ss_pred             ecc------cceeeeecCCCceeeeEEEEcCCCC-EEEeeccceEEEEEEEeec---------------CeeeehhcCCC
Confidence            998      88888887543 3467888999999 455777665 499999998               56677889999


Q ss_pred             cceeeEEEccCCCeEEEEecCCCCCCCCCCeEEEEEccccccCChhhHhHhhhcccceEEEeeeCC
Q 021657          244 DKVVDFHWNASDPWTVVSVSDDCDSTGGGGTLQIWRMSDLIYRPQDEVLAELEKFKAHVISCTSKP  309 (309)
Q Consensus       244 ~~v~~~~~~~~~~~~~~s~s~d~~s~~~dg~v~vw~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~P  309 (309)
                      ++|.+++|+|.+..|+        ||++|.+|++||+-.     ......+++ +...++.++|+|
T Consensus       479 gPVs~l~f~~~~~~La--------S~SWDkTVRiW~if~-----s~~~vEtl~-i~sdvl~vsfrP  530 (893)
T KOG0291|consen  479 GPVSGLSFSPDGSLLA--------SGSWDKTVRIWDIFS-----SSGTVETLE-IRSDVLAVSFRP  530 (893)
T ss_pred             CcceeeEEccccCeEE--------eccccceEEEEEeec-----cCceeeeEe-eccceeEEEEcC
Confidence            9999999999988655        777779999999973     223344444 677889999987

>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=100.00  E-value=1.4e-32  Score=221.97  Aligned_cols=207  Identities=20%  Similarity=0.370  Sum_probs=174.5

Q ss_pred             ccCCCCCcceEEEEECCCCCEEEEecCCCcEEEEeCCccccccccCCccccccCCCCceeecCCCCCCCCcccCCCCCcC
Q 021657            3 ILTGHQDNAEFALAMCPTEPYVLSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVG   82 (309)
Q Consensus         3 ~l~~H~~~~V~~~~~~~~~~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   82 (309)
                      ..+||.. .+++++++|||+++|||+.||+|+|||..++.                                        
T Consensus       345 KQQgH~~-~i~~l~YSpDgq~iaTG~eDgKVKvWn~~Sgf----------------------------------------  383 (893)
T KOG0291|consen  345 KQQGHSD-RITSLAYSPDGQLIATGAEDGKVKVWNTQSGF----------------------------------------  383 (893)
T ss_pred             ecccccc-ceeeEEECCCCcEEEeccCCCcEEEEeccCce----------------------------------------
Confidence            4679999 89999999999999999999999999998543                                        


Q ss_pred             cccccccccCCeEEEEEecCCCcEEEEEcCCCeEEEEEcCCCCcceEEEeec-cCCceeEEEeccCCCCeEEEEcCCC-c
Q 021657           83 PRGIYNGHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPVIKVEKA-HDADLHCVDWNPLDDNLILTGSADN-S  160 (309)
Q Consensus        83 ~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~-~~~~v~~~~~~~~~~~~l~~~~~dg-~  160 (309)
                      +..++..|+..|+.++|+..+ +.+++.+-||+|+.||+...+  ..+++.. .+-...|++..| .|..+.+|+.|. .
T Consensus       384 C~vTFteHts~Vt~v~f~~~g-~~llssSLDGtVRAwDlkRYr--NfRTft~P~p~QfscvavD~-sGelV~AG~~d~F~  459 (893)
T KOG0291|consen  384 CFVTFTEHTSGVTAVQFTARG-NVLLSSSLDGTVRAWDLKRYR--NFRTFTSPEPIQFSCVAVDP-SGELVCAGAQDSFE  459 (893)
T ss_pred             EEEEeccCCCceEEEEEEecC-CEEEEeecCCeEEeeeecccc--eeeeecCCCceeeeEEEEcC-CCCEEEeeccceEE
Confidence            445677899999999999998 889999999999999998766  3444433 345678999999 999999999886 7


Q ss_pred             EEEEecCCCCCCCCCCceeeeccCCCCeeEEEEecCCCcEEEEecCCCcEEEEeCCcccccccCCCCCcCCCCceeeeec
Q 021657          161 VRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHA  240 (309)
Q Consensus       161 i~i~d~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~  240 (309)
                      |.+|++++      ++.+-.+.+|.++|.+++|+|++. +||+++.|.+|++||+-.....               .+--
T Consensus       460 IfvWS~qT------GqllDiLsGHEgPVs~l~f~~~~~-~LaS~SWDkTVRiW~if~s~~~---------------vEtl  517 (893)
T KOG0291|consen  460 IFVWSVQT------GQLLDILSGHEGPVSGLSFSPDGS-LLASGSWDKTVRIWDIFSSSGT---------------VETL  517 (893)
T ss_pred             EEEEEeec------CeeeehhcCCCCcceeeEEccccC-eEEeccccceEEEEEeeccCce---------------eeeE
Confidence            99999999      999999999999999999999999 5789999999999999762211               1122


Q ss_pred             CCCcceeeEEEccCCCeEEEEecCCCCCCCCCCeEEEEEccccc
Q 021657          241 GHRDKVVDFHWNASDPWTVVSVSDDCDSTGGGGTLQIWRMSDLI  284 (309)
Q Consensus       241 ~~~~~v~~~~~~~~~~~~~~s~s~d~~s~~~dg~v~vw~~~~~~  284 (309)
                      .+...+.+++|.|+|..+.+        +.-||.|.+||..+..
T Consensus       518 ~i~sdvl~vsfrPdG~elaV--------aTldgqItf~d~~~~~  553 (893)
T KOG0291|consen  518 EIRSDVLAVSFRPDGKELAV--------ATLDGQITFFDIKEAV  553 (893)
T ss_pred             eeccceeEEEEcCCCCeEEE--------EEecceEEEEEhhhce
Confidence            35667999999999998773        3445999999998654

>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=100.00  E-value=9.5e-33  Score=222.85  Aligned_cols=267  Identities=18%  Similarity=0.286  Sum_probs=220.8

Q ss_pred             ccCCCCCcceEEEEECCCCCEEEEecCCCcEEEEeCCccccccccCCccccccCCCCceeecCCCCCCCCcccCCCCCcC
Q 021657            3 ILTGHQDNAEFALAMCPTEPYVLSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVG   82 (309)
Q Consensus         3 ~l~~H~~~~V~~~~~~~~~~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   82 (309)
                      .+.||.. .|.+++++.+...+++|+ .+.++||+..+..+....................+..+...+.+.+++..+..
T Consensus       368 ~~~GHR~-dVRsl~vS~d~~~~~Sga-~~SikiWn~~t~kciRTi~~~y~l~~~Fvpgd~~Iv~G~k~Gel~vfdlaS~~  445 (888)
T KOG0306|consen  368 EIGGHRS-DVRSLCVSSDSILLASGA-GESIKIWNRDTLKCIRTITCGYILASKFVPGDRYIVLGTKNGELQVFDLASAS  445 (888)
T ss_pred             eeccchh-heeEEEeecCceeeeecC-CCcEEEEEccCcceeEEeccccEEEEEecCCCceEEEeccCCceEEEEeehhh
Confidence            4678998 899999999888788776 46999999998877766665544433333333445556778889999999999


Q ss_pred             cccccccccCCeEEEEEecCCCcEEEEEcCCCeEEEEEcCC-----CCcceEEE-----eeccCCceeEEEeccCCCCeE
Q 021657           83 PRGIYNGHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARV-----GTSPVIKV-----EKAHDADLHCVDWNPLDDNLI  152 (309)
Q Consensus        83 ~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~-----~~~~~~~~-----~~~~~~~v~~~~~~~~~~~~l  152 (309)
                      .+...+.|.+.|++++..|++ ..+++|+.|.+|++||..-     +.+.....     ...-...|.|+.++| ++.+|
T Consensus       446 l~Eti~AHdgaIWsi~~~pD~-~g~vT~saDktVkfWdf~l~~~~~gt~~k~lsl~~~rtLel~ddvL~v~~Sp-dgk~L  523 (888)
T KOG0306|consen  446 LVETIRAHDGAIWSISLSPDN-KGFVTGSADKTVKFWDFKLVVSVPGTQKKVLSLKHTRTLELEDDVLCVSVSP-DGKLL  523 (888)
T ss_pred             hhhhhhccccceeeeeecCCC-CceEEecCCcEEEEEeEEEEeccCcccceeeeeccceEEeccccEEEEEEcC-CCcEE
Confidence            999999999999999999998 7899999999999999742     11101111     112356899999999 99999


Q ss_pred             EEEcCCCcEEEEecCCCCCCCCCCceeeeccCCCCeeEEEEecCCCcEEEEecCCCcEEEEeCCcccccccCCCCCcCCC
Q 021657          153 LTGSADNSVRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYP  232 (309)
Q Consensus       153 ~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~  232 (309)
                      +++-.|.++++|-+.+      .+..-++.+|+-||.||.++||+. ++++|+.|..|+||-++-               
T Consensus       524 aVsLLdnTVkVyflDt------lKFflsLYGHkLPV~smDIS~DSk-livTgSADKnVKiWGLdF---------------  581 (888)
T KOG0306|consen  524 AVSLLDNTVKVYFLDT------LKFFLSLYGHKLPVLSMDISPDSK-LIVTGSADKNVKIWGLDF---------------  581 (888)
T ss_pred             EEEeccCeEEEEEecc------eeeeeeecccccceeEEeccCCcC-eEEeccCCCceEEecccc---------------
Confidence            9999999999999999      788889999999999999999999 678999999999999987               


Q ss_pred             CceeeeecCCCcceeeEEEccCCCeEEEEecCCCCCCCCCCeEEEEEccccccCChhhHhHhhhcccceEEEeeeCC
Q 021657          233 AGLFFQHAGHRDKVVDFHWNASDPWTVVSVSDDCDSTGGGGTLQIWRMSDLIYRPQDEVLAELEKFKAHVISCTSKP  309 (309)
Q Consensus       233 ~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~s~d~~s~~~dg~v~vw~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~P  309 (309)
                      +.+...+.+|.+.|.++.|.|... ++.       |+|.|+.|+-||-.      ..++++.+.+|...|++++..|
T Consensus       582 GDCHKS~fAHdDSvm~V~F~P~~~-~FF-------t~gKD~kvKqWDg~------kFe~iq~L~~H~~ev~cLav~~  644 (888)
T KOG0306|consen  582 GDCHKSFFAHDDSVMSVQFLPKTH-LFF-------TCGKDGKVKQWDGE------KFEEIQKLDGHHSEVWCLAVSP  644 (888)
T ss_pred             chhhhhhhcccCceeEEEEcccce-eEE-------EecCcceEEeechh------hhhhheeeccchheeeeeEEcC
Confidence            445567889999999999999555 455       55566999999999      7899999999999999999887

>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=100.00  E-value=1.1e-32  Score=221.85  Aligned_cols=214  Identities=22%  Similarity=0.394  Sum_probs=185.1

Q ss_pred             cccCCCCCcceEEEEECCCC-CEEEEecCCCcEEEEeCCccccccccCCccccccCCCCceeecCCCCCCCCcccCCCCC
Q 021657            2 EILTGHQDNAEFALAMCPTE-PYVLSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPS   80 (309)
Q Consensus         2 ~~l~~H~~~~V~~~~~~~~~-~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (309)
                      +...||+. .|.+++++..+ .+|+++|.|+++++|++........  +                             ..
T Consensus       405 a~~~gH~~-svgava~~~~~asffvsvS~D~tlK~W~l~~s~~~~~--~-----------------------------~~  452 (775)
T KOG0319|consen  405 AQANGHTN-SVGAVAGSKLGASFFVSVSQDCTLKLWDLPKSKETAF--P-----------------------------IV  452 (775)
T ss_pred             hhhccccc-ccceeeecccCccEEEEecCCceEEEecCCCcccccc--c-----------------------------ce
Confidence            45689999 89999997644 6899999999999999985211100  0                             01


Q ss_pred             cCcccccccccCCeEEEEEecCCCcEEEEEcCCCeEEEEEcCCCCcceEEEeeccCCceeEEEeccCCCCeEEEEcCCCc
Q 021657           81 VGPRGIYNGHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNS  160 (309)
Q Consensus        81 ~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~  160 (309)
                      .........|...|++++.+|++ .++||||.|.+.+||+++..+  ....+.+|...|.++.|+| ..+.+++++.|.+
T Consensus       453 ~~~~~t~~aHdKdIN~Vaia~nd-kLiAT~SqDktaKiW~le~~~--l~~vLsGH~RGvw~V~Fs~-~dq~laT~SgD~T  528 (775)
T KOG0319|consen  453 LTCRYTERAHDKDINCVAIAPND-KLIATGSQDKTAKIWDLEQLR--LLGVLSGHTRGVWCVSFSK-NDQLLATCSGDKT  528 (775)
T ss_pred             ehhhHHHHhhcccccceEecCCC-ceEEecccccceeeecccCce--EEEEeeCCccceEEEEecc-ccceeEeccCCce
Confidence            12223456799999999999998 899999999999999999666  8899999999999999999 9999999999999


Q ss_pred             EEEEecCCCCCCCCCCceeeeccCCCCeeEEEEecCCCcEEEEecCCCcEEEEeCCcccccccCCCCCcCCCCceeeeec
Q 021657          161 VRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHA  240 (309)
Q Consensus       161 i~i~d~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~  240 (309)
                      |+||.+.+      ..++.+|.+|...|..+.|-.++++| ++++.||.+++|++++               ..+..++.
T Consensus       529 vKIW~is~------fSClkT~eGH~~aVlra~F~~~~~ql-iS~~adGliKlWnikt---------------~eC~~tlD  586 (775)
T KOG0319|consen  529 VKIWSIST------FSCLKTFEGHTSAVLRASFIRNGKQL-ISAGADGLIKLWNIKT---------------NECEMTLD  586 (775)
T ss_pred             EEEEEecc------ceeeeeecCccceeEeeeeeeCCcEE-EeccCCCcEEEEeccc---------------hhhhhhhh
Confidence            99999999      99999999999999999999999985 5999999999999998               56788899


Q ss_pred             CCCcceeeEEEccCCCeEEEEecCCCCCCCCCCeEEEEEcc
Q 021657          241 GHRDKVVDFHWNASDPWTVVSVSDDCDSTGGGGTLQIWRMS  281 (309)
Q Consensus       241 ~~~~~v~~~~~~~~~~~~~~s~s~d~~s~~~dg~v~vw~~~  281 (309)
                      +|++.|++++-+|....++        |||.||.|.+|.=.
T Consensus       587 ~H~DrvWaL~~~~~~~~~~--------tgg~Dg~i~~wkD~  619 (775)
T KOG0319|consen  587 AHNDRVWALSVSPLLDMFV--------TGGGDGRIIFWKDV  619 (775)
T ss_pred             hccceeEEEeecCccceeE--------ecCCCeEEEEeecC
Confidence            9999999999999888555        77788999999854

>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]

Probab=100.00  E-value=3.9e-33  Score=207.11  Aligned_cols=188  Identities=19%  Similarity=0.388  Sum_probs=173.9

Q ss_pred             CcccccccccCCeEEEEEecCCCcEEEEEcCCCeEEEEEcCCCCcceEEEeeccCCceeEEEeccCCCCeEEEEcCCCcE
Q 021657           82 GPRGIYNGHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSV  161 (309)
Q Consensus        82 ~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i  161 (309)
                      +..+.+.+|.+.|.|+++.|-+ ..|++|+.|++|+|||+.+++  ....+.+|...|..+++++ ...++++++.|+.|
T Consensus       142 Kl~rVi~gHlgWVr~vavdP~n-~wf~tgs~DrtikIwDlatg~--LkltltGhi~~vr~vavS~-rHpYlFs~gedk~V  217 (460)
T KOG0285|consen  142 KLYRVISGHLGWVRSVAVDPGN-EWFATGSADRTIKIWDLATGQ--LKLTLTGHIETVRGVAVSK-RHPYLFSAGEDKQV  217 (460)
T ss_pred             eehhhhhhccceEEEEeeCCCc-eeEEecCCCceeEEEEcccCe--EEEeecchhheeeeeeecc-cCceEEEecCCCee
Confidence            4456778999999999999986 899999999999999999999  7888999999999999999 88999999999999


Q ss_pred             EEEecCCCCCCCCCCceeeeccCCCCeeEEEEecCCCcEEEEecCCCcEEEEeCCcccccccCCCCCcCCCCceeeeecC
Q 021657          162 RMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAG  241 (309)
Q Consensus       162 ~i~d~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~  241 (309)
                      +-||+..      .+.++.+.+|-..|.+++.+|.-. ++++|+.|..++|||+++               ...+..+.+
T Consensus       218 KCwDLe~------nkvIR~YhGHlS~V~~L~lhPTld-vl~t~grDst~RvWDiRt---------------r~~V~~l~G  275 (460)
T KOG0285|consen  218 KCWDLEY------NKVIRHYHGHLSGVYCLDLHPTLD-VLVTGGRDSTIRVWDIRT---------------RASVHVLSG  275 (460)
T ss_pred             EEEechh------hhhHHHhccccceeEEEeccccce-eEEecCCcceEEEeeecc---------------cceEEEecC
Confidence            9999999      899999999999999999999888 467999999999999998               556788999


Q ss_pred             CCcceeeEEEccCCCeEEEEecCCCCCCCCCCeEEEEEccccccCChhhHhHhhhcccceEEEeeeCC
Q 021657          242 HRDKVVDFHWNASDPWTVVSVSDDCDSTGGGGTLQIWRMSDLIYRPQDEVLAELEKFKAHVISCTSKP  309 (309)
Q Consensus       242 ~~~~v~~~~~~~~~~~~~~s~s~d~~s~~~dg~v~vw~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~P  309 (309)
                      |..+|.++.+.|.++.++        ||+.|++|++||+.      .++...++..|+..|.+++.||
T Consensus       276 H~~~V~~V~~~~~dpqvi--------t~S~D~tvrlWDl~------agkt~~tlt~hkksvral~lhP  329 (460)
T KOG0285|consen  276 HTNPVASVMCQPTDPQVI--------TGSHDSTVRLWDLR------AGKTMITLTHHKKSVRALCLHP  329 (460)
T ss_pred             CCCcceeEEeecCCCceE--------EecCCceEEEeeec------cCceeEeeecccceeeEEecCC
Confidence            999999999999999877        77777999999999      7888899999999999999987

>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]

Probab=100.00  E-value=1.7e-32  Score=203.91  Aligned_cols=244  Identities=19%  Similarity=0.280  Sum_probs=192.9

Q ss_pred             cccCCCCCcceEEEEECCCCCEEEEecCCCcEEEEeCCcccccccc--CCccccccCCCCceeecCCCCCCCCcccCCCC
Q 021657            2 EILTGHQDNAEFALAMCPTEPYVLSGGKDKSVVLWSIQDHITSSAT--DPATAKSAGSSGSIIKQSPKPGDGNDKAADGP   79 (309)
Q Consensus         2 ~~l~~H~~~~V~~~~~~~~~~~l~t~~~dg~i~vwd~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   79 (309)
                      -.+.||++ .|+++.|+-+|.+||||+.+|.|+||+..++......  .........-......+..+..++.+..|.+.
T Consensus       100 ~eltgHKD-SVt~~~FshdgtlLATGdmsG~v~v~~~stg~~~~~~~~e~~dieWl~WHp~a~illAG~~DGsvWmw~ip  178 (399)
T KOG0296|consen  100 GELTGHKD-SVTCCSFSHDGTLLATGDMSGKVLVFKVSTGGEQWKLDQEVEDIEWLKWHPRAHILLAGSTDGSVWMWQIP  178 (399)
T ss_pred             eEecCCCC-ceEEEEEccCceEEEecCCCccEEEEEcccCceEEEeecccCceEEEEecccccEEEeecCCCcEEEEECC
Confidence            35789999 8999999999999999999999999999988544443  22223333333456677778899999999999


Q ss_pred             CcCcccccccccCCeEEEEEecCCCcEEEEEcCCCeEEEEEcCCCCcceEEEee--------------------------
Q 021657           80 SVGPRGIYNGHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPVIKVEK--------------------------  133 (309)
Q Consensus        80 ~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~--------------------------  133 (309)
                      +....+.+.+|+.++++=.|.|+| +.++++..||+|++||+.++..  .....                          
T Consensus       179 ~~~~~kv~~Gh~~~ct~G~f~pdG-Kr~~tgy~dgti~~Wn~ktg~p--~~~~~~~e~~~~~~~~~~~~~~~~~~g~~e~  255 (399)
T KOG0296|consen  179 SQALCKVMSGHNSPCTCGEFIPDG-KRILTGYDDGTIIVWNPKTGQP--LHKITQAEGLELPCISLNLAGSTLTKGNSEG  255 (399)
T ss_pred             CcceeeEecCCCCCcccccccCCC-ceEEEEecCceEEEEecCCCce--eEEecccccCcCCccccccccceeEeccCCc
Confidence            988999999999999999999998 7899999999999999987642  11111                          


Q ss_pred             -------------------------ccCCceeEEEeccC--CCCeEEEEcCCCcEEEEecCCCCCCCCCCceeeeccCCC
Q 021657          134 -------------------------AHDADLHCVDWNPL--DDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGHSA  186 (309)
Q Consensus       134 -------------------------~~~~~v~~~~~~~~--~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~  186 (309)
                                               .+...+.|+.+.|.  .-.++|+|+.||+|.|||+..      .++...+. |..
T Consensus       256 ~~~~~~~~sgKVv~~~n~~~~~l~~~~e~~~esve~~~~ss~lpL~A~G~vdG~i~iyD~a~------~~~R~~c~-he~  328 (399)
T KOG0296|consen  256 VACGVNNGSGKVVNCNNGTVPELKPSQEELDESVESIPSSSKLPLAACGSVDGTIAIYDLAA------STLRHICE-HED  328 (399)
T ss_pred             cEEEEccccceEEEecCCCCccccccchhhhhhhhhcccccccchhhcccccceEEEEeccc------chhheecc-CCC
Confidence                                     12222333443331  335789999999999999997      55555554 888


Q ss_pred             CeeEEEEecCCCcEEEEecCCCcEEEEeCCcccccccCCCCCcCCCCceeeeecCCCcceeeEEEccCCCeEEEEecCCC
Q 021657          187 AVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKVVDFHWNASDPWTVVSVSDDC  266 (309)
Q Consensus       187 ~v~~~~~~~~~~~l~~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~s~d~  266 (309)
                      +|..+.|-+ ..+| ++++.||.|+.||.|+               .++++.+.+|...|.+++++|+.++ ++++|+  
T Consensus       329 ~V~~l~w~~-t~~l-~t~c~~g~v~~wDaRt---------------G~l~~~y~GH~~~Il~f~ls~~~~~-vvT~s~--  388 (399)
T KOG0296|consen  329 GVTKLKWLN-TDYL-LTACANGKVRQWDART---------------GQLKFTYTGHQMGILDFALSPQKRL-VVTVSD--  388 (399)
T ss_pred             ceEEEEEcC-cchh-eeeccCceEEeeeccc---------------cceEEEEecCchheeEEEEcCCCcE-EEEecC--
Confidence            899999999 5655 4888999999999999               7788999999999999999997775 555554  


Q ss_pred             CCCCCCCeEEEEEcc
Q 021657          267 DSTGGGGTLQIWRMS  281 (309)
Q Consensus       267 ~s~~~dg~v~vw~~~  281 (309)
                           |++.+||++.
T Consensus       389 -----D~~a~VF~v~  398 (399)
T KOG0296|consen  389 -----DNTALVFEVP  398 (399)
T ss_pred             -----CCeEEEEecC
Confidence                 4999999875

>KOG0282 consensus mRNA splicing factor [Function unknown]

Probab=100.00  E-value=2.7e-33  Score=215.22  Aligned_cols=248  Identities=21%  Similarity=0.356  Sum_probs=203.3

Q ss_pred             CcccCCCCCcceEEEEECCCCCEEEEecCCCcEEEEeCCccccccccCCcccc---ccCCCCceeecCCCCCCCCcccCC
Q 021657            1 MEILTGHQDNAEFALAMCPTEPYVLSGGKDKSVVLWSIQDHITSSATDPATAK---SAGSSGSIIKQSPKPGDGNDKAAD   77 (309)
Q Consensus         1 l~~l~~H~~~~V~~~~~~~~~~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~   77 (309)
                      |+++.||.. +|..++|+.+|..++|+|.|+.|++||++++.+...+......   ...... -..+..+..++.+..||
T Consensus       251 lrtf~gH~k-~Vrd~~~s~~g~~fLS~sfD~~lKlwDtETG~~~~~f~~~~~~~cvkf~pd~-~n~fl~G~sd~ki~~wD  328 (503)
T KOG0282|consen  251 LRTFKGHRK-PVRDASFNNCGTSFLSASFDRFLKLWDTETGQVLSRFHLDKVPTCVKFHPDN-QNIFLVGGSDKKIRQWD  328 (503)
T ss_pred             ehhhhcchh-hhhhhhccccCCeeeeeecceeeeeeccccceEEEEEecCCCceeeecCCCC-CcEEEEecCCCcEEEEe
Confidence            588999999 9999999999999999999999999999999777666543332   111122 34556678899999999


Q ss_pred             CCCcCcccccccccCCeEEEEEecCCCcEEEEEcCCCeEEEEEcCCCCcceEEEeeccCCceeEEEeccCCCCeEEEEcC
Q 021657           78 GPSVGPRGIYNGHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSA  157 (309)
Q Consensus        78 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~  157 (309)
                      .++.+.++.+..|-+.|..+.|-++| ..|++.++|+.++||+.+..-. .......+.-...++..+| ++.++++-+.
T Consensus       329 iRs~kvvqeYd~hLg~i~~i~F~~~g-~rFissSDdks~riWe~~~~v~-ik~i~~~~~hsmP~~~~~P-~~~~~~aQs~  405 (503)
T KOG0282|consen  329 IRSGKVVQEYDRHLGAILDITFVDEG-RRFISSSDDKSVRIWENRIPVP-IKNIADPEMHTMPCLTLHP-NGKWFAAQSM  405 (503)
T ss_pred             ccchHHHHHHHhhhhheeeeEEccCC-ceEeeeccCccEEEEEcCCCcc-chhhcchhhccCcceecCC-CCCeehhhcc
Confidence            99999999999999999999999998 8899999999999999876651 2223333445677999999 9999999999


Q ss_pred             CCcEEEEecCCCCCCCCCCceeeeccCC--CCeeEEEEecCCCcEEEEecCCCcEEEEeCCcccccccCCCCCcCCCCce
Q 021657          158 DNSVRMFDRRNLTSNGVGSPINKFEGHS--AAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGL  235 (309)
Q Consensus       158 dg~i~i~d~~~~~~~~~~~~~~~~~~~~--~~v~~~~~~~~~~~l~~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~  235 (309)
                      |+.|.+|.+...-.   ......+++|.  +.-..+.|||||++ |++|+.||.+.+||.++               ..+
T Consensus       406 dN~i~ifs~~~~~r---~nkkK~feGh~vaGys~~v~fSpDG~~-l~SGdsdG~v~~wdwkt---------------~kl  466 (503)
T KOG0282|consen  406 DNYIAIFSTVPPFR---LNKKKRFEGHSVAGYSCQVDFSPDGRT-LCSGDSDGKVNFWDWKT---------------TKL  466 (503)
T ss_pred             CceEEEEecccccc---cCHhhhhcceeccCceeeEEEcCCCCe-EEeecCCccEEEeechh---------------hhh
Confidence            99999998765322   23344566664  45667899999997 56999999999999998               556


Q ss_pred             eeeecCCCcceeeEEEccCCCeEEEEecCCCCCCCCCCeEEEEE
Q 021657          236 FFQHAGHRDKVVDFHWNASDPWTVVSVSDDCDSTGGGGTLQIWR  279 (309)
Q Consensus       236 ~~~~~~~~~~v~~~~~~~~~~~~~~s~s~d~~s~~~dg~v~vw~  279 (309)
                      +..+.+|.+++..+.|+|..+..+|       |||.||.|++|+
T Consensus       467 ~~~lkah~~~ci~v~wHP~e~Skva-------t~~w~G~Ikiwd  503 (503)
T KOG0282|consen  467 VSKLKAHDQPCIGVDWHPVEPSKVA-------TCGWDGLIKIWD  503 (503)
T ss_pred             hhccccCCcceEEEEecCCCcceeE-------ecccCceeEecC
Confidence            7788999999999999998887787       555669999996

>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=100.00  E-value=9.5e-32  Score=213.91  Aligned_cols=241  Identities=18%  Similarity=0.369  Sum_probs=199.7

Q ss_pred             CCcceEEEEECCCCCEEEEecCCCcEEEEeCCccccccccCC-ccccccCCCCceeecCCCCCCCCcccCCCCCcCcccc
Q 021657            8 QDNAEFALAMCPTEPYVLSGGKDKSVVLWSIQDHITSSATDP-ATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGI   86 (309)
Q Consensus         8 ~~~~V~~~~~~~~~~~l~t~~~dg~i~vwd~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   86 (309)
                      .. .|+++.|+++|.+|++|..+|.|.|||..+......... .......-......+..+..++.+..++.+..+....
T Consensus       217 ~~-~vtSv~ws~~G~~LavG~~~g~v~iwD~~~~k~~~~~~~~h~~rvg~laW~~~~lssGsr~~~I~~~dvR~~~~~~~  295 (484)
T KOG0305|consen  217 EE-LVTSVKWSPDGSHLAVGTSDGTVQIWDVKEQKKTRTLRGSHASRVGSLAWNSSVLSSGSRDGKILNHDVRISQHVVS  295 (484)
T ss_pred             CC-ceEEEEECCCCCEEEEeecCCeEEEEehhhccccccccCCcCceeEEEeccCceEEEecCCCcEEEEEEecchhhhh
Confidence            44 799999999999999999999999999987755554444 2222222333355666778888898898888776655


Q ss_pred             -cccccCCeEEEEEecCCCcEEEEEcCCCeEEEEEcCCCCcceEEEeeccCCceeEEEeccCCCCeEEEEc--CCCcEEE
Q 021657           87 -YNGHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGS--ADNSVRM  163 (309)
Q Consensus        87 -~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~--~dg~i~i  163 (309)
                       +.+|...|..++|++++ .+||+|+.|+.+.|||.....  ....+..|...|.+++|+|-...+||+|+  .|+.|++
T Consensus       296 ~~~~H~qeVCgLkws~d~-~~lASGgnDN~~~Iwd~~~~~--p~~~~~~H~aAVKA~awcP~q~~lLAsGGGs~D~~i~f  372 (484)
T KOG0305|consen  296 TLQGHRQEVCGLKWSPDG-NQLASGGNDNVVFIWDGLSPE--PKFTFTEHTAAVKALAWCPWQSGLLATGGGSADRCIKF  372 (484)
T ss_pred             hhhcccceeeeeEECCCC-CeeccCCCccceEeccCCCcc--ccEEEeccceeeeEeeeCCCccCceEEcCCCcccEEEE
Confidence             88999999999999999 899999999999999996655  67788899999999999998888999975  4899999


Q ss_pred             EecCCCCCCCCCCceeeeccCCCCeeEEEEecCCCcEEE-EecCCCcEEEEeCCcccccccCCCCCcCCCCceeeeecCC
Q 021657          164 FDRRNLTSNGVGSPINKFEGHSAAVLCVQWSPDKSSVFG-SSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGH  242 (309)
Q Consensus       164 ~d~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~-~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~  242 (309)
                      ||..+      +..+..+. ....|.+|.|++..+.++. .|..++.|.||+...               ...+..+.+|
T Consensus       373 wn~~~------g~~i~~vd-tgsQVcsL~Wsk~~kEi~sthG~s~n~i~lw~~ps---------------~~~~~~l~gH  430 (484)
T KOG0305|consen  373 WNTNT------GARIDSVD-TGSQVCSLIWSKKYKELLSTHGYSENQITLWKYPS---------------MKLVAELLGH  430 (484)
T ss_pred             EEcCC------CcEecccc-cCCceeeEEEcCCCCEEEEecCCCCCcEEEEeccc---------------cceeeeecCC
Confidence            99998      88888887 4678999999998865553 345678899999988               4556788999


Q ss_pred             CcceeeEEEccCCCeEEEEecCCCCCCCCCCeEEEEEccc
Q 021657          243 RDKVVDFHWNASDPWTVVSVSDDCDSTGGGGTLQIWRMSD  282 (309)
Q Consensus       243 ~~~v~~~~~~~~~~~~~~s~s~d~~s~~~dg~v~vw~~~~  282 (309)
                      ...|..++++|++..++        +|+.|.++++|++-+
T Consensus       431 ~~RVl~la~SPdg~~i~--------t~a~DETlrfw~~f~  462 (484)
T KOG0305|consen  431 TSRVLYLALSPDGETIV--------TGAADETLRFWNLFD  462 (484)
T ss_pred             cceeEEEEECCCCCEEE--------EecccCcEEeccccC
Confidence            99999999999998877        666668999999985

>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]

Probab=100.00  E-value=1.7e-32  Score=200.34  Aligned_cols=232  Identities=20%  Similarity=0.338  Sum_probs=177.7

Q ss_pred             ccCCCCCcceEEEEECCCCCEEEEecCCCcEEEEeCCccccccccCCccccccCCCCceeecCCCCCCCCcccCCCCCc-
Q 021657            3 ILTGHQDNAEFALAMCPTEPYVLSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSV-   81 (309)
Q Consensus         3 ~l~~H~~~~V~~~~~~~~~~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-   81 (309)
                      .|..|++ ++.+.+|+|||.++|||+.|..|+|.|++..........  ....                     +.... 
T Consensus       107 ylt~HK~-~cR~aafs~DG~lvATGsaD~SIKildvermlaks~~~e--m~~~---------------------~~qa~h  162 (430)
T KOG0640|consen  107 YLTSHKS-PCRAAAFSPDGSLVATGSADASIKILDVERMLAKSKPKE--MISG---------------------DTQARH  162 (430)
T ss_pred             EEeeccc-ceeeeeeCCCCcEEEccCCcceEEEeehhhhhhhcchhh--hccC---------------------CcccCC
Confidence            4678999 899999999999999999999999999985422211000  0000                     00111 


Q ss_pred             CcccccccccCCeEEEEEecCCCcEEEEEcCCCeEEEEEcCCCCcceEEEeeccCCceeEEEeccCCCCeEEEEcCCCcE
Q 021657           82 GPRGIYNGHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSV  161 (309)
Q Consensus        82 ~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i  161 (309)
                      -.++++..|..+|+++.|+|.. .+|++|+.|++|+++|.................+|.++.|+| .|.++++|...-++
T Consensus       163 PvIRTlYDH~devn~l~FHPre-~ILiS~srD~tvKlFDfsK~saKrA~K~~qd~~~vrsiSfHP-sGefllvgTdHp~~  240 (430)
T KOG0640|consen  163 PVIRTLYDHVDEVNDLDFHPRE-TILISGSRDNTVKLFDFSKTSAKRAFKVFQDTEPVRSISFHP-SGEFLLVGTDHPTL  240 (430)
T ss_pred             ceEeehhhccCcccceeecchh-heEEeccCCCeEEEEecccHHHHHHHHHhhccceeeeEeecC-CCceEEEecCCCce
Confidence            2357788899999999999988 999999999999999997654222222223457899999999 99999999999999


Q ss_pred             EEEecCCCCCCCCCCceee---eccCCCCeeEEEEecCCCcEEEEecCCCcEEEEeCCcccccccCCCCCcCCCCceeee
Q 021657          162 RMFDRRNLTSNGVGSPINK---FEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQ  238 (309)
Q Consensus       162 ~i~d~~~~~~~~~~~~~~~---~~~~~~~v~~~~~~~~~~~l~~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~  238 (309)
                      ++||+.+      .++...   -..|.+.|+++.+++.++ ++++++.||.|++||--.               ..++.+
T Consensus       241 rlYdv~T------~QcfvsanPd~qht~ai~~V~Ys~t~~-lYvTaSkDG~IklwDGVS---------------~rCv~t  298 (430)
T KOG0640|consen  241 RLYDVNT------YQCFVSANPDDQHTGAITQVRYSSTGS-LYVTASKDGAIKLWDGVS---------------NRCVRT  298 (430)
T ss_pred             eEEeccc------eeEeeecCcccccccceeEEEecCCcc-EEEEeccCCcEEeecccc---------------HHHHHH
Confidence            9999998      443322   245788999999999999 688999999999999765               223333


Q ss_pred             e-cCCC-cceeeEEEccCCCeEEEEecCCCCCCCCCCeEEEEEccccccCChhhHhHhhh
Q 021657          239 H-AGHR-DKVVDFHWNASDPWTVVSVSDDCDSTGGGGTLQIWRMSDLIYRPQDEVLAELE  296 (309)
Q Consensus       239 ~-~~~~-~~v~~~~~~~~~~~~~~s~s~d~~s~~~dg~v~vw~~~~~~~~~~~~~~~~~~  296 (309)
                      + ..|. ..|.+..|..++.+++        +.|.|..+++|.+.      +++++.++.
T Consensus       299 ~~~AH~gsevcSa~Ftkn~kyiL--------sSG~DS~vkLWEi~------t~R~l~~Yt  344 (430)
T KOG0640|consen  299 IGNAHGGSEVCSAVFTKNGKYIL--------SSGKDSTVKLWEIS------TGRMLKEYT  344 (430)
T ss_pred             HHhhcCCceeeeEEEccCCeEEe--------ecCCcceeeeeeec------CCceEEEEe
Confidence            3 2344 5799999999999888        88888999999999      566655544

>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]

Probab=100.00  E-value=2.7e-32  Score=195.01  Aligned_cols=259  Identities=15%  Similarity=0.212  Sum_probs=192.5

Q ss_pred             CcccCCCCCcceEEEEECCCCCEEEEecCCCcEEEEeCCccccccccCCcccc---ccCCCCceeecCCC---CCCCCcc
Q 021657            1 MEILTGHQDNAEFALAMCPTEPYVLSGGKDKSVVLWSIQDHITSSATDPATAK---SAGSSGSIIKQSPK---PGDGNDK   74 (309)
Q Consensus         1 l~~l~~H~~~~V~~~~~~~~~~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~---~~~~~~~   74 (309)
                      |-+++||++ +|+|++.+.+.++|+||+.|.++++||++++...........+   ..........+...   ...+.+.
T Consensus        45 lGty~GHtG-avW~~Did~~s~~liTGSAD~t~kLWDv~tGk~la~~k~~~~Vk~~~F~~~gn~~l~~tD~~mg~~~~v~  123 (327)
T KOG0643|consen   45 LGTYDGHTG-AVWCCDIDWDSKHLITGSADQTAKLWDVETGKQLATWKTNSPVKRVDFSFGGNLILASTDKQMGYTCFVS  123 (327)
T ss_pred             eeeecCCCc-eEEEEEecCCcceeeeccccceeEEEEcCCCcEEEEeecCCeeEEEeeccCCcEEEEEehhhcCcceEEE
Confidence            347899999 9999999999999999999999999999999665554433222   22223333332222   2233444


Q ss_pred             cCCCC-------CcCcccccccccCCeEEEEEecCCCcEEEEEcCCCeEEEEEcCCCCcceEEEeeccCCceeEEEeccC
Q 021657           75 AADGP-------SVGPRGIYNGHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPL  147 (309)
Q Consensus        75 ~~~~~-------~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~  147 (309)
                      +++.+       ..++...+..+...++.+-|.|.+ ..|++|.+||.|.+||+++++. .+.....|...|+.|+++| 
T Consensus       124 ~fdi~~~~~~~~s~ep~~kI~t~~skit~a~Wg~l~-~~ii~Ghe~G~is~~da~~g~~-~v~s~~~h~~~Ind~q~s~-  200 (327)
T KOG0643|consen  124 VFDIRDDSSDIDSEEPYLKIPTPDSKITSALWGPLG-ETIIAGHEDGSISIYDARTGKE-LVDSDEEHSSKINDLQFSR-  200 (327)
T ss_pred             EEEccCChhhhcccCceEEecCCccceeeeeecccC-CEEEEecCCCcEEEEEcccCce-eeechhhhccccccccccC-
Confidence            45444       556677788888999999999998 8899999999999999998863 5666678999999999999 


Q ss_pred             CCCeEEEEcCCCcEEEEecCCCCCCCCCCceeeeccCCCCeeEEEEecCCCcEEEEecCCCc-EEEEeCCcccccccCCC
Q 021657          148 DDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAEDGL-LNIWDYEKVGKKVEQGP  226 (309)
Q Consensus       148 ~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~dg~-i~iwd~~~~~~~~~~~~  226 (309)
                      +..++++++.|.+-++||.++      .+.+.++. ...+|++.+++|...+++..|+.+-. |.-=+.+. ++-...+.
T Consensus       201 d~T~FiT~s~Dttakl~D~~t------l~v~Kty~-te~PvN~aaisP~~d~VilgGGqeA~dVTTT~~r~-GKFEArFy  272 (327)
T KOG0643|consen  201 DRTYFITGSKDTTAKLVDVRT------LEVLKTYT-TERPVNTAAISPLLDHVILGGGQEAMDVTTTSTRA-GKFEARFY  272 (327)
T ss_pred             CcceEEecccCccceeeeccc------eeeEEEee-ecccccceecccccceEEecCCceeeeeeeecccc-cchhhhHH
Confidence            999999999999999999999      88888887 57899999999998887655554421 11111111 10000000


Q ss_pred             CCcCCCCceeeeecCCCcceeeEEEccCCCeEEEEecCCCCCCCCCCeEEEEEcc
Q 021657          227 RTTNYPAGLFFQHAGHRDKVVDFHWNASDPWTVVSVSDDCDSTGGGGTLQIWRMS  281 (309)
Q Consensus       227 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~s~d~~s~~~dg~v~vw~~~  281 (309)
                      .  ....+.+...++|-++|++++|+|+|..+.        |||.||.|++..+.
T Consensus       273 h--~i~eEEigrvkGHFGPINsvAfhPdGksYs--------SGGEDG~VR~h~Fd  317 (327)
T KOG0643|consen  273 H--LIFEEEIGRVKGHFGPINSVAFHPDGKSYS--------SGGEDGYVRLHHFD  317 (327)
T ss_pred             H--HHHHHHhccccccccCcceeEECCCCcccc--------cCCCCceEEEEEec
Confidence            0  000124567789999999999999988766        88888999999876

>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]

Probab=100.00  E-value=5.3e-31  Score=191.48  Aligned_cols=222  Identities=24%  Similarity=0.402  Sum_probs=171.5

Q ss_pred             cceEEEEECC-CCCEEEEecCCCcEEEEeCCccccccccCCccccccCCCCceeecCCCCCCCCcccCCCCCcCcccccc
Q 021657           10 NAEFALAMCP-TEPYVLSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYN   88 (309)
Q Consensus        10 ~~V~~~~~~~-~~~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   88 (309)
                      +.|.+|+||| ...+|+.+|.||+||+|+++..-                                     ...+ +...
T Consensus        28 DsIS~l~FSP~~~~~~~A~SWD~tVR~wevq~~g-------------------------------------~~~~-ka~~   69 (347)
T KOG0647|consen   28 DSISALAFSPQADNLLAAGSWDGTVRIWEVQNSG-------------------------------------QLVP-KAQQ   69 (347)
T ss_pred             cchheeEeccccCceEEecccCCceEEEEEecCC-------------------------------------cccc-hhhh
Confidence            3799999999 45566799999999999998420                                     0111 3456


Q ss_pred             cccCCeEEEEEecCCCcEEEEEcCCCeEEEEEcCCCCcceEEEeeccCCceeEEEeccCCCC--eEEEEcCCCcEEEEec
Q 021657           89 GHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDN--LILTGSADNSVRMFDR  166 (309)
Q Consensus        89 ~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~--~l~~~~~dg~i~i~d~  166 (309)
                      .|.++|.+++|+.+| ..+++|+.|+.+++||+.+++   ...+..|..+|.++.|-+ ...  .|++|+.|.+|++||.
T Consensus        70 ~~~~PvL~v~Wsddg-skVf~g~~Dk~~k~wDL~S~Q---~~~v~~Hd~pvkt~~wv~-~~~~~cl~TGSWDKTlKfWD~  144 (347)
T KOG0647|consen   70 SHDGPVLDVCWSDDG-SKVFSGGCDKQAKLWDLASGQ---VSQVAAHDAPVKTCHWVP-GMNYQCLVTGSWDKTLKFWDT  144 (347)
T ss_pred             ccCCCeEEEEEccCC-ceEEeeccCCceEEEEccCCC---eeeeeecccceeEEEEec-CCCcceeEecccccceeeccc
Confidence            799999999999999 889999999999999999987   556678999999999987 555  8999999999999999


Q ss_pred             CCCCCCCCCCceeeecc-----------------------------------------CCCCeeEEEEecCCCcEEEEec
Q 021657          167 RNLTSNGVGSPINKFEG-----------------------------------------HSAAVLCVQWSPDKSSVFGSSA  205 (309)
Q Consensus       167 ~~~~~~~~~~~~~~~~~-----------------------------------------~~~~v~~~~~~~~~~~l~~~~~  205 (309)
                      |..      .++.++.-                                         .+-.+++|+..+|... +|.|+
T Consensus       145 R~~------~pv~t~~LPeRvYa~Dv~~pm~vVata~r~i~vynL~n~~te~k~~~SpLk~Q~R~va~f~d~~~-~alGs  217 (347)
T KOG0647|consen  145 RSS------NPVATLQLPERVYAADVLYPMAVVATAERHIAVYNLENPPTEFKRIESPLKWQTRCVACFQDKDG-FALGS  217 (347)
T ss_pred             CCC------CeeeeeeccceeeehhccCceeEEEecCCcEEEEEcCCCcchhhhhcCcccceeeEEEEEecCCc-eEeee
Confidence            983      33333321                                         1224567777777664 46777


Q ss_pred             CCCcEEEEeCCcccccccCCCCCcCCCCceeeeecCCC---------cceeeEEEccCCCeEEEEecCCCCCCCCCCeEE
Q 021657          206 EDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHR---------DKVVDFHWNASDPWTVVSVSDDCDSTGGGGTLQ  276 (309)
Q Consensus       206 ~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~v~~~~~~~~~~~~~~s~s~d~~s~~~dg~v~  276 (309)
                      -+|.+-|..+....+             ..-+.++.|.         ..|++++|+|.-+.++        |.|.||+..
T Consensus       218 iEGrv~iq~id~~~~-------------~~nFtFkCHR~~~~~~~~VYaVNsi~FhP~hgtlv--------TaGsDGtf~  276 (347)
T KOG0647|consen  218 IEGRVAIQYIDDPNP-------------KDNFTFKCHRSTNSVNDDVYAVNSIAFHPVHGTLV--------TAGSDGTFS  276 (347)
T ss_pred             ecceEEEEecCCCCc-------------cCceeEEEeccCCCCCCceEEecceEeecccceEE--------EecCCceEE
Confidence            778777777766222             1223444554         2688999999877766        777779999


Q ss_pred             EEEccccccCChhhHhHhhhcccceEEEeeeC
Q 021657          277 IWRMSDLIYRPQDEVLAELEKFKAHVISCTSK  308 (309)
Q Consensus       277 vw~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~  308 (309)
                      +||-.      ....+++.+.|..+|.++.|+
T Consensus       277 FWDkd------ar~kLk~s~~~~qpItcc~fn  302 (347)
T KOG0647|consen  277 FWDKD------ARTKLKTSETHPQPITCCSFN  302 (347)
T ss_pred             Eecch------hhhhhhccCcCCCccceeEec
Confidence            99998      778889999999999999986

>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto

Probab=100.00  E-value=8.6e-31  Score=205.85  Aligned_cols=241  Identities=25%  Similarity=0.474  Sum_probs=192.2

Q ss_pred             cccCCCCCcceEEEEECCCCCEEEEecCCCcEEEEeCCccccccccCCc----cccccCCCCceeecCCCCCCCCcccCC
Q 021657            2 EILTGHQDNAEFALAMCPTEPYVLSGGKDKSVVLWSIQDHITSSATDPA----TAKSAGSSGSIIKQSPKPGDGNDKAAD   77 (309)
Q Consensus         2 ~~l~~H~~~~V~~~~~~~~~~~l~t~~~dg~i~vwd~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~   77 (309)
                      +.+.+|.. .+..+.|+|++++|++++.||.|++||+.+..........    .........  ..+..+..++.+.+|+
T Consensus        45 ~~~~~~~~-~i~~~~~~~~~~~l~~~~~~~~i~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~--~~~~~~~~~~~i~~~~  121 (289)
T cd00200          45 RTLKGHTG-PVRDVAASADGTYLASGSSDKTIRLWDLETGECVRTLTGHTSYVSSVAFSPDG--RILSSSSRDKTIKVWD  121 (289)
T ss_pred             EEEecCCc-ceeEEEECCCCCEEEEEcCCCeEEEEEcCcccceEEEeccCCcEEEEEEcCCC--CEEEEecCCCeEEEEE
Confidence            35678888 7899999999999999999999999999875322222111    111111111  1222233578899999


Q ss_pred             CCCcCcccccccccCCeEEEEEecCCCcEEEEEcCCCeEEEEEcCCCCcceEEEeeccCCceeEEEeccCCCCeEEEEcC
Q 021657           78 GPSVGPRGIYNGHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSA  157 (309)
Q Consensus        78 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~  157 (309)
                      ..+.+....+..|...|.++.|+|++ .++++++.|+.|++||++.++  ....+..|...+.+++|+| +++.+++++.
T Consensus       122 ~~~~~~~~~~~~~~~~i~~~~~~~~~-~~l~~~~~~~~i~i~d~~~~~--~~~~~~~~~~~i~~~~~~~-~~~~l~~~~~  197 (289)
T cd00200         122 VETGKCLTTLRGHTDWVNSVAFSPDG-TFVASSSQDGTIKLWDLRTGK--CVATLTGHTGEVNSVAFSP-DGEKLLSSSS  197 (289)
T ss_pred             CCCcEEEEEeccCCCcEEEEEEcCcC-CEEEEEcCCCcEEEEEccccc--cceeEecCccccceEEECC-CcCEEEEecC
Confidence            98888888888899999999999986 788888889999999998776  5666778888999999999 8889999999


Q ss_pred             CCcEEEEecCCCCCCCCCCceeeeccCCCCeeEEEEecCCCcEEEEecCCCcEEEEeCCcccccccCCCCCcCCCCceee
Q 021657          158 DNSVRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFF  237 (309)
Q Consensus       158 dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~  237 (309)
                      ++.|++||++.      ++.+..+..+...+.+++|+|++. ++++++.||.+++||+..               .....
T Consensus       198 ~~~i~i~d~~~------~~~~~~~~~~~~~i~~~~~~~~~~-~~~~~~~~~~i~i~~~~~---------------~~~~~  255 (289)
T cd00200         198 DGTIKLWDLST------GKCLGTLRGHENGVNSVAFSPDGY-LLASGSEDGTIRVWDLRT---------------GECVQ  255 (289)
T ss_pred             CCcEEEEECCC------CceecchhhcCCceEEEEEcCCCc-EEEEEcCCCcEEEEEcCC---------------ceeEE
Confidence            99999999998      778888878888999999999966 566777899999999986               23445


Q ss_pred             eecCCCcceeeEEEccCCCeEEEEecCCCCCCCCCCeEEEEE
Q 021657          238 QHAGHRDKVVDFHWNASDPWTVVSVSDDCDSTGGGGTLQIWR  279 (309)
Q Consensus       238 ~~~~~~~~v~~~~~~~~~~~~~~s~s~d~~s~~~dg~v~vw~  279 (309)
                      .+..|...|.+++|+|++..++        +++.||.+++|+
T Consensus       256 ~~~~~~~~i~~~~~~~~~~~l~--------~~~~d~~i~iw~  289 (289)
T cd00200         256 TLSGHTNSVTSLAWSPDGKRLA--------SGSADGTIRIWD  289 (289)
T ss_pred             EccccCCcEEEEEECCCCCEEE--------EecCCCeEEecC
Confidence            5668888999999999877665        555669999996

>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]

Probab=100.00  E-value=1.3e-32  Score=202.26  Aligned_cols=242  Identities=19%  Similarity=0.350  Sum_probs=191.5

Q ss_pred             ceEEEEECCCCCEEEEecCCCcEEEEeCCccccccccCCccccccCCCCceeecCCCCCCCCcccCCCCCcCcccccccc
Q 021657           11 AEFALAMCPTEPYVLSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGH   90 (309)
Q Consensus        11 ~V~~~~~~~~~~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   90 (309)
                      .+-|..|+|||++|++|+.||.|.|||..++.......                                .+....+.-+
T Consensus       215 h~EcA~FSPDgqyLvsgSvDGFiEVWny~~GKlrKDLk--------------------------------YQAqd~fMMm  262 (508)
T KOG0275|consen  215 HVECARFSPDGQYLVSGSVDGFIEVWNYTTGKLRKDLK--------------------------------YQAQDNFMMM  262 (508)
T ss_pred             chhheeeCCCCceEeeccccceeeeehhccchhhhhhh--------------------------------hhhhcceeec
Confidence            67799999999999999999999999998663222111                                1112234557


Q ss_pred             cCCeEEEEEecCCCcEEEEEcCCCeEEEEEcCCCCcceEEEee-ccCCceeEEEeccCCCCeEEEEcCCCcEEEEecCCC
Q 021657           91 EDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPVIKVEK-AHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNL  169 (309)
Q Consensus        91 ~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~  169 (309)
                      ..+|.|+.|+.|. .++++|+.||.|++|.++++.  +...+. +|...|+|+.|+. ++..+++++.|.++|+.-++. 
T Consensus       263 d~aVlci~FSRDs-EMlAsGsqDGkIKvWri~tG~--ClRrFdrAHtkGvt~l~FSr-D~SqiLS~sfD~tvRiHGlKS-  337 (508)
T KOG0275|consen  263 DDAVLCISFSRDS-EMLASGSQDGKIKVWRIETGQ--CLRRFDRAHTKGVTCLSFSR-DNSQILSASFDQTVRIHGLKS-  337 (508)
T ss_pred             ccceEEEeecccH-HHhhccCcCCcEEEEEEecch--HHHHhhhhhccCeeEEEEcc-CcchhhcccccceEEEecccc-
Confidence            8899999999998 889999999999999999998  555554 8999999999999 999999999999999999999 


Q ss_pred             CCCCCCCceeeeccCCCCeeEEEEecCCCcEEEEecCCCcEEEEeCCcccccccCCCCCcC-------------------
Q 021657          170 TSNGVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTN-------------------  230 (309)
Q Consensus       170 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~dg~i~iwd~~~~~~~~~~~~~~~~-------------------  230 (309)
                           ++.+..+.+|.+.|+...|.++|.+++ +++.||+|++|+.++.......-+....                   
T Consensus       338 -----GK~LKEfrGHsSyvn~a~ft~dG~~ii-saSsDgtvkvW~~KtteC~~Tfk~~~~d~~vnsv~~~PKnpeh~iVC  411 (508)
T KOG0275|consen  338 -----GKCLKEFRGHSSYVNEATFTDDGHHII-SASSDGTVKVWHGKTTECLSTFKPLGTDYPVNSVILLPKNPEHFIVC  411 (508)
T ss_pred             -----chhHHHhcCccccccceEEcCCCCeEE-EecCCccEEEecCcchhhhhhccCCCCcccceeEEEcCCCCceEEEE
Confidence                 999999999999999999999999865 9999999999999874433222211111                   


Q ss_pred             ----------CCCceeeeecC---CCcceeeEEEccCCCeEEEEecCCCCCCCCCCeEEEEEccccccCChhhHhHhhhc
Q 021657          231 ----------YPAGLFFQHAG---HRDKVVDFHWNASDPWTVVSVSDDCDSTGGGGTLQIWRMSDLIYRPQDEVLAELEK  297 (309)
Q Consensus       231 ----------~~~~~~~~~~~---~~~~v~~~~~~~~~~~~~~s~s~d~~s~~~dg~v~vw~~~~~~~~~~~~~~~~~~~  297 (309)
                                .+.+.+..+..   ..+...+...+|.|.++.        ..|.|+.++.|.+.      +++...++.-
T Consensus       412 Nrsntv~imn~qGQvVrsfsSGkREgGdFi~~~lSpkGewiY--------cigED~vlYCF~~~------sG~LE~tl~V  477 (508)
T KOG0275|consen  412 NRSNTVYIMNMQGQVVRSFSSGKREGGDFINAILSPKGEWIY--------CIGEDGVLYCFSVL------SGKLERTLPV  477 (508)
T ss_pred             cCCCeEEEEeccceEEeeeccCCccCCceEEEEecCCCcEEE--------EEccCcEEEEEEee------cCceeeeeec
Confidence                      01112222211   123456677889888877        55666999999999      7888888999


Q ss_pred             ccceEEEeeeCC
Q 021657          298 FKAHVISCTSKP  309 (309)
Q Consensus       298 h~~~v~~~~~~P  309 (309)
                      |...|..++-||
T Consensus       478 hEkdvIGl~HHP  489 (508)
T KOG0275|consen  478 HEKDVIGLTHHP  489 (508)
T ss_pred             ccccccccccCc
Confidence            999999988887

>KOG0302 consensus Ribosome Assembly protein [General function prediction only]

Probab=100.00  E-value=2.5e-31  Score=198.69  Aligned_cols=221  Identities=29%  Similarity=0.576  Sum_probs=179.6

Q ss_pred             cccCCCCCcceEEEEECCC-CCEEEEecCCCcEEEEeCCccccccccCCccccccCCCCceeecCCCCCCCCcccCCCCC
Q 021657            2 EILTGHQDNAEFALAMCPT-EPYVLSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPS   80 (309)
Q Consensus         2 ~~l~~H~~~~V~~~~~~~~-~~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (309)
                      -++.+|.+ .=++|+|||- ...|+||..-+.|++|...++.-...                                  
T Consensus       205 ~t~~ghk~-EGy~LdWSp~~~g~LlsGDc~~~I~lw~~~~g~W~vd----------------------------------  249 (440)
T KOG0302|consen  205 FTFNGHKG-EGYGLDWSPIKTGRLLSGDCVKGIHLWEPSTGSWKVD----------------------------------  249 (440)
T ss_pred             EEecccCc-cceeeecccccccccccCccccceEeeeeccCceeec----------------------------------
Confidence            46788988 6699999993 34589999999999999876422111                                  


Q ss_pred             cCcccccccccCCeEEEEEecCCCcEEEEEcCCCeEEEEEcCCCCcceEEEeeccCCceeEEEeccCCCCeEEEEcCCCc
Q 021657           81 VGPRGIYNGHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNS  160 (309)
Q Consensus        81 ~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~  160 (309)
                         ...+.+|+..|.+++|+|.....|++|+-||+|+|||++.+........++|.+.|+.+.|+. ...+|++|+.||+
T Consensus       250 ---~~Pf~gH~~SVEDLqWSptE~~vfaScS~DgsIrIWDiRs~~~~~~~~~kAh~sDVNVISWnr-~~~lLasG~DdGt  325 (440)
T KOG0302|consen  250 ---QRPFTGHTKSVEDLQWSPTEDGVFASCSCDGSIRIWDIRSGPKKAAVSTKAHNSDVNVISWNR-REPLLASGGDDGT  325 (440)
T ss_pred             ---CccccccccchhhhccCCccCceEEeeecCceEEEEEecCCCccceeEeeccCCceeeEEccC-CcceeeecCCCce
Confidence               133567999999999999988999999999999999999986555556689999999999998 6669999999999


Q ss_pred             EEEEecCCCCCCCCCCceeeeccCCCCeeEEEEecCCCcEEEEecCCCcEEEEeCCcccccccC----CCCCcCCCCcee
Q 021657          161 VRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQ----GPRTTNYPAGLF  236 (309)
Q Consensus       161 i~i~d~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~dg~i~iwd~~~~~~~~~~----~~~~~~~~~~~~  236 (309)
                      ++|||+|+.+.   ++++..|+.|+.+|++|.|+|....+|++++.|.+|.|||+.......+.    .+.....|++++
T Consensus       326 ~~iwDLR~~~~---~~pVA~fk~Hk~pItsieW~p~e~s~iaasg~D~QitiWDlsvE~D~ee~~~~a~~~L~dlPpQLL  402 (440)
T KOG0302|consen  326 LSIWDLRQFKS---GQPVATFKYHKAPITSIEWHPHEDSVIAASGEDNQITIWDLSVEADEEEIDQEAAEGLQDLPPQLL  402 (440)
T ss_pred             EEEEEhhhccC---CCcceeEEeccCCeeEEEeccccCceEEeccCCCcEEEEEeeccCChhhhccccccchhcCCceeE
Confidence            99999998765   68999999999999999999988888999999999999999764432111    112223566777


Q ss_pred             eeecCCCcceeeEEEccCCCeEEEEecCC
Q 021657          237 FQHAGHRDKVVDFHWNASDPWTVVSVSDD  265 (309)
Q Consensus       237 ~~~~~~~~~v~~~~~~~~~~~~~~s~s~d  265 (309)
                      +...+. ..+..+.|++.-+-++++.+.|
T Consensus       403 FVHqGQ-ke~KevhWH~QiPG~lvsTa~d  430 (440)
T KOG0302|consen  403 FVHQGQ-KEVKEVHWHRQIPGLLVSTAID  430 (440)
T ss_pred             EEecch-hHhhhheeccCCCCeEEEeccc
Confidence            776653 4789999999988888877766

>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=9.7e-32  Score=189.80  Aligned_cols=243  Identities=23%  Similarity=0.306  Sum_probs=189.4

Q ss_pred             ccCCCCCcceEEEEECCCCCEEEEecCCCcEEEEeCCccccccccCCccccccCCCCceeecCCCCCCCCcccCCCCCcC
Q 021657            3 ILTGHQDNAEFALAMCPTEPYVLSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVG   82 (309)
Q Consensus         3 ~l~~H~~~~V~~~~~~~~~~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   82 (309)
                      .-.+|.+ .|..+..+--|++|||++.|++|+|+.+++..                                     ...
T Consensus         6 idt~H~D-~IHda~lDyygkrlATcsSD~tVkIf~v~~n~-------------------------------------~s~   47 (299)
T KOG1332|consen    6 IDTQHED-MIHDAQLDYYGKRLATCSSDGTVKIFEVRNNG-------------------------------------QSK   47 (299)
T ss_pred             hhhhhhh-hhhHhhhhhhcceeeeecCCccEEEEEEcCCC-------------------------------------Cce
Confidence            3467888 89999998899999999999999999998531                                     124


Q ss_pred             cccccccccCCeEEEEEec-CCCcEEEEEcCCCeEEEEEcCCCCcceEEEeeccCCceeEEEeccC-CCCeEEEEcCCCc
Q 021657           83 PRGIYNGHEDTVEDVTFCP-SSAQEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPL-DDNLILTGSADNS  160 (309)
Q Consensus        83 ~~~~~~~~~~~v~~~~~~~-~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~-~~~~l~~~~~dg~  160 (309)
                      .+..+.+|.++|+.++|.. .-+.+||+++.||.|.||.-..++.........|...|++++|.|. -+-.|++++.||.
T Consensus        48 ll~~L~Gh~GPVwqv~wahPk~G~iLAScsYDgkVIiWke~~g~w~k~~e~~~h~~SVNsV~wapheygl~LacasSDG~  127 (299)
T KOG1332|consen   48 LLAELTGHSGPVWKVAWAHPKFGTILASCSYDGKVIIWKEENGRWTKAYEHAAHSASVNSVAWAPHEYGLLLACASSDGK  127 (299)
T ss_pred             eeeEecCCCCCeeEEeecccccCcEeeEeecCceEEEEecCCCchhhhhhhhhhcccceeecccccccceEEEEeeCCCc
Confidence            5678899999999999964 3338999999999999999888877677778899999999999983 2458899999999


Q ss_pred             EEEEecCCCCCCCCCCceeeeccCCCCeeEEEEecC---CC----------cEEEEecCCCcEEEEeCCcccccccCCCC
Q 021657          161 VRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWSPD---KS----------SVFGSSAEDGLLNIWDYEKVGKKVEQGPR  227 (309)
Q Consensus       161 i~i~d~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~---~~----------~l~~~~~~dg~i~iwd~~~~~~~~~~~~~  227 (309)
                      |.+.+.+....   ...-.....|.-.|++++|.|.   |.          +-|++|+.|+.|+||+.....        
T Consensus       128 vsvl~~~~~g~---w~t~ki~~aH~~GvnsVswapa~~~g~~~~~~~~~~~krlvSgGcDn~VkiW~~~~~~--------  196 (299)
T KOG1332|consen  128 VSVLTYDSSGG---WTTSKIVFAHEIGVNSVSWAPASAPGSLVDQGPAAKVKRLVSGGCDNLVKIWKFDSDS--------  196 (299)
T ss_pred             EEEEEEcCCCC---ccchhhhhccccccceeeecCcCCCccccccCcccccceeeccCCccceeeeecCCcc--------
Confidence            99999987421   2333445678999999999986   41          126799999999999998731        


Q ss_pred             CcCCCCceeeeecCCCcceeeEEEccCC---CeEEEEecCCCCCCCCCCeEEEEEccccccCChhhHhHhhhcccceEEE
Q 021657          228 TTNYPAGLFFQHAGHRDKVVDFHWNASD---PWTVVSVSDDCDSTGGGGTLQIWRMSDLIYRPQDEVLAELEKFKAHVIS  304 (309)
Q Consensus       228 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~---~~~~~s~s~d~~s~~~dg~v~vw~~~~~~~~~~~~~~~~~~~h~~~v~~  304 (309)
                           ..+-..+.+|.+.|.+++|.|.-   ...+|++|.|       |++.||........-+..+   ++.....++.
T Consensus       197 -----w~~e~~l~~H~dwVRDVAwaP~~gl~~s~iAS~SqD-------g~viIwt~~~e~e~wk~tl---l~~f~~~~w~  261 (299)
T KOG1332|consen  197 -----WKLERTLEGHKDWVRDVAWAPSVGLPKSTIASCSQD-------GTVIIWTKDEEYEPWKKTL---LEEFPDVVWR  261 (299)
T ss_pred             -----hhhhhhhhhcchhhhhhhhccccCCCceeeEEecCC-------CcEEEEEecCccCcccccc---cccCCcceEE
Confidence                 12234578999999999999964   3457766665       9999999984222222333   3445688999


Q ss_pred             eeeCC
Q 021657          305 CTSKP  309 (309)
Q Consensus       305 ~~~~P  309 (309)
                      +.|++
T Consensus       262 vSWS~  266 (299)
T KOG1332|consen  262 VSWSL  266 (299)
T ss_pred             EEEec
Confidence            98875

>KOG0641 consensus WD40 repeat protein [General function prediction only]

Probab=100.00  E-value=1e-29  Score=178.14  Aligned_cols=245  Identities=21%  Similarity=0.350  Sum_probs=194.2

Q ss_pred             CCCCCcceEEEEECCCCCEEEEecCCCcEEEEeCCccccccccCCccc----------c--ccCCCCceeecCCCCCCCC
Q 021657            5 TGHQDNAEFALAMCPTEPYVLSGGKDKSVVLWSIQDHITSSATDPATA----------K--SAGSSGSIIKQSPKPGDGN   72 (309)
Q Consensus         5 ~~H~~~~V~~~~~~~~~~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~----------~--~~~~~~~~~~~~~~~~~~~   72 (309)
                      +.|++ .|+|.+|+|+|++|+||+.|++|++.-.....+.........          .  ...........+.+..+..
T Consensus        86 khhkg-siyc~~ws~~geliatgsndk~ik~l~fn~dt~~~~g~dle~nmhdgtirdl~fld~~~s~~~il~s~gagdc~  164 (350)
T KOG0641|consen   86 KHHKG-SIYCTAWSPCGELIATGSNDKTIKVLPFNADTCNATGHDLEFNMHDGTIRDLAFLDDPESGGAILASAGAGDCK  164 (350)
T ss_pred             cccCc-cEEEEEecCccCeEEecCCCceEEEEecccccccccCcceeeeecCCceeeeEEecCCCcCceEEEecCCCcce
Confidence            45666 899999999999999999999999987765433222221111          1  1223345667777888999


Q ss_pred             cccCCCCCcCcccccccccCCeEEEEEecCCCcEEEEEcCCCeEEEEEcCCCCcceEEEee--c-----cCCceeEEEec
Q 021657           73 DKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPVIKVEK--A-----HDADLHCVDWN  145 (309)
Q Consensus        73 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~--~-----~~~~v~~~~~~  145 (309)
                      +++-+...++..+.+.+|++.|.++- +-++ .+|++|+.|.+|+.||++-..  .+..+.  -     ..+.|.+++..
T Consensus       165 iy~tdc~~g~~~~a~sghtghilaly-swn~-~m~~sgsqdktirfwdlrv~~--~v~~l~~~~~~~glessavaav~vd  240 (350)
T KOG0641|consen  165 IYITDCGRGQGFHALSGHTGHILALY-SWNG-AMFASGSQDKTIRFWDLRVNS--CVNTLDNDFHDGGLESSAVAAVAVD  240 (350)
T ss_pred             EEEeecCCCCcceeecCCcccEEEEE-EecC-cEEEccCCCceEEEEeeeccc--eeeeccCcccCCCcccceeEEEEEC
Confidence            99999999999999999999998874 2334 789999999999999998766  343332  1     22579999999


Q ss_pred             cCCCCeEEEEcCCCcEEEEecCCCCCCCCCCceeeeccCCCCeeEEEEecCCCcEEEEecCCCcEEEEeCCcccccccCC
Q 021657          146 PLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQG  225 (309)
Q Consensus       146 ~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~dg~i~iwd~~~~~~~~~~~  225 (309)
                      | .+++|++|..|....+||++.      +++++.+..|...|.++.|+|.-.+++ +++.|..|++-|+...-..    
T Consensus       241 p-sgrll~sg~~dssc~lydirg------~r~iq~f~phsadir~vrfsp~a~yll-t~syd~~ikltdlqgdla~----  308 (350)
T KOG0641|consen  241 P-SGRLLASGHADSSCMLYDIRG------GRMIQRFHPHSADIRCVRFSPGAHYLL-TCSYDMKIKLTDLQGDLAH----  308 (350)
T ss_pred             C-CcceeeeccCCCceEEEEeeC------CceeeeeCCCccceeEEEeCCCceEEE-EecccceEEEeecccchhh----
Confidence            9 999999999999999999999      999999999999999999999888765 9999999999998752111    


Q ss_pred             CCCcCCCCceeeeecCCCcceeeEEEccCCCeEEEEecCCCCCCCCCCeEEEEEcc
Q 021657          226 PRTTNYPAGLFFQHAGHRDKVVDFHWNASDPWTVVSVSDDCDSTGGGGTLQIWRMS  281 (309)
Q Consensus       226 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~s~d~~s~~~dg~v~vw~~~  281 (309)
                             ..++.....|...+..+.|+|.+-.++        +.+.|.++.+|-++
T Consensus       309 -------el~~~vv~ehkdk~i~~rwh~~d~sfi--------sssadkt~tlwa~~  349 (350)
T KOG0641|consen  309 -------ELPIMVVAEHKDKAIQCRWHPQDFSFI--------SSSADKTATLWALN  349 (350)
T ss_pred             -------cCceEEEEeccCceEEEEecCccceee--------eccCcceEEEeccC
Confidence                   224556678999999999999765544        55556999999875

>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]

Probab=99.98  E-value=1.8e-30  Score=185.68  Aligned_cols=231  Identities=21%  Similarity=0.310  Sum_probs=192.2

Q ss_pred             ccCCCCCcceEEEEECCCCCEEEEecCCCcEEEEeCCccccccccCCccccccCCCCceeecCCCCCCCCcccCCCCCcC
Q 021657            3 ILTGHQDNAEFALAMCPTEPYVLSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVG   82 (309)
Q Consensus         3 ~l~~H~~~~V~~~~~~~~~~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   82 (309)
                      .|+||+. +++.+.++.+|.+|++++.|.+..||-..                                        +++
T Consensus         5 ~l~GHER-plTqiKyN~eGDLlFscaKD~~~~vw~s~----------------------------------------nGe   43 (327)
T KOG0643|consen    5 LLQGHER-PLTQIKYNREGDLLFSCAKDSTPTVWYSL----------------------------------------NGE   43 (327)
T ss_pred             ccccCcc-ccceEEecCCCcEEEEecCCCCceEEEec----------------------------------------CCc
Confidence            4789999 99999999999999999999999999865                                        345


Q ss_pred             cccccccccCCeEEEEEecCCCcEEEEEcCCCeEEEEEcCCCCcceEEEeeccCCceeEEEeccCCCCeEEEEcCC----
Q 021657           83 PRGIYNGHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSAD----  158 (309)
Q Consensus        83 ~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d----  158 (309)
                      .+-.+.+|++.|+++..+.+. ..+++|+.|.++++||+.+++  ....+ ....+|..+.|++ ++++++....+    
T Consensus        44 rlGty~GHtGavW~~Did~~s-~~liTGSAD~t~kLWDv~tGk--~la~~-k~~~~Vk~~~F~~-~gn~~l~~tD~~mg~  118 (327)
T KOG0643|consen   44 RLGTYDGHTGAVWCCDIDWDS-KHLITGSADQTAKLWDVETGK--QLATW-KTNSPVKRVDFSF-GGNLILASTDKQMGY  118 (327)
T ss_pred             eeeeecCCCceEEEEEecCCc-ceeeeccccceeEEEEcCCCc--EEEEe-ecCCeeEEEeecc-CCcEEEEEehhhcCc
Confidence            567889999999999998887 789999999999999999999  45554 3567899999999 88887776543    


Q ss_pred             -CcEEEEecCCCCCCC-CCCceeeeccCCCCeeEEEEecCCCcEEEEecCCCcEEEEeCCcccccccCCCCCcCCCCcee
Q 021657          159 -NSVRMFDRRNLTSNG-VGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLF  236 (309)
Q Consensus       159 -g~i~i~d~~~~~~~~-~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~  236 (309)
                       +.|.++|++...... ..++...+..+...++.+-|.|-++++ ++|.+||.|.+||+++..+              .+
T Consensus       119 ~~~v~~fdi~~~~~~~~s~ep~~kI~t~~skit~a~Wg~l~~~i-i~Ghe~G~is~~da~~g~~--------------~v  183 (327)
T KOG0643|consen  119 TCFVSVFDIRDDSSDIDSEEPYLKIPTPDSKITSALWGPLGETI-IAGHEDGSISIYDARTGKE--------------LV  183 (327)
T ss_pred             ceEEEEEEccCChhhhcccCceEEecCCccceeeeeecccCCEE-EEecCCCcEEEEEcccCce--------------ee
Confidence             679999999543111 155688888888999999999999975 5999999999999998222              33


Q ss_pred             eeecCCCcceeeEEEccCCCeEEEEecCCCCCCCCCCeEEEEEccccccCChhhHhHhhhcccceEEEeeeCC
Q 021657          237 FQHAGHRDKVVDFHWNASDPWTVVSVSDDCDSTGGGGTLQIWRMSDLIYRPQDEVLAELEKFKAHVISCTSKP  309 (309)
Q Consensus       237 ~~~~~~~~~v~~~~~~~~~~~~~~s~s~d~~s~~~dg~v~vw~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~P  309 (309)
                      .....|...|+++.++|+..+++        |++.|.+-++||+.      +.++++++. ...||.+.+++|
T Consensus       184 ~s~~~h~~~Ind~q~s~d~T~Fi--------T~s~Dttakl~D~~------tl~v~Kty~-te~PvN~aaisP  241 (327)
T KOG0643|consen  184 DSDEEHSSKINDLQFSRDRTYFI--------TGSKDTTAKLVDVR------TLEVLKTYT-TERPVNTAAISP  241 (327)
T ss_pred             echhhhccccccccccCCcceEE--------ecccCccceeeecc------ceeeEEEee-ecccccceeccc
Confidence            45567889999999999888766        77777999999999      677777776 467888888877

>PTZ00421 coronin; Provisional

Probab=99.98  E-value=7.9e-30  Score=209.72  Aligned_cols=216  Identities=17%  Similarity=0.241  Sum_probs=168.2

Q ss_pred             ceEEEEECCCCCEEEEecCCCcEEEEeCCccccccccCCccccccCCCCceeecCCCCCCCCcccCCCCCcC---ccccc
Q 021657           11 AEFALAMCPTEPYVLSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVG---PRGIY   87 (309)
Q Consensus        11 ~V~~~~~~~~~~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~   87 (309)
                      -|.....++++..+++++.+..+..|+...+......                              ...++   ....+
T Consensus        22 ~i~~~~~~~d~~~~~~~n~~~~a~~w~~~gg~~v~~~------------------------------~~~G~~~~~~~~l   71 (493)
T PTZ00421         22 NVTPSTALWDCSNTIACNDRFIAVPWQQLGSTAVLKH------------------------------TDYGKLASNPPIL   71 (493)
T ss_pred             ccccccccCCCCCcEeECCceEEEEEecCCceEEeec------------------------------cccccCCCCCceE
Confidence            3566677788888999999999999987643211100                              00111   12346


Q ss_pred             ccccCCeEEEEEecCCCcEEEEEcCCCeEEEEEcCCCCc-----ceEEEeeccCCceeEEEeccCCCCeEEEEcCCCcEE
Q 021657           88 NGHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTS-----PVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVR  162 (309)
Q Consensus        88 ~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~-----~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~  162 (309)
                      .+|.+.|++++|+|.++.+|++|+.|++|++||+..+..     .....+.+|...|.+++|+|...++|++++.|+.|+
T Consensus        72 ~GH~~~V~~v~fsP~d~~~LaSgS~DgtIkIWdi~~~~~~~~~~~~l~~L~gH~~~V~~l~f~P~~~~iLaSgs~DgtVr  151 (493)
T PTZ00421         72 LGQEGPIIDVAFNPFDPQKLFTASEDGTIMGWGIPEEGLTQNISDPIVHLQGHTKKVGIVSFHPSAMNVLASAGADMVVN  151 (493)
T ss_pred             eCCCCCEEEEEEcCCCCCEEEEEeCCCEEEEEecCCCccccccCcceEEecCCCCcEEEEEeCcCCCCEEEEEeCCCEEE
Confidence            789999999999994337899999999999999976431     245667899999999999993357999999999999


Q ss_pred             EEecCCCCCCCCCCceeeeccCCCCeeEEEEecCCCcEEEEecCCCcEEEEeCCcccccccCCCCCcCCCCceeeeecCC
Q 021657          163 MFDRRNLTSNGVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGH  242 (309)
Q Consensus       163 i~d~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~  242 (309)
                      +||+++      ++.+..+..|...|.+++|+|++.. |++++.|+.|++||++.               ...+..+.+|
T Consensus       152 IWDl~t------g~~~~~l~~h~~~V~sla~spdG~l-Latgs~Dg~IrIwD~rs---------------g~~v~tl~~H  209 (493)
T PTZ00421        152 VWDVER------GKAVEVIKCHSDQITSLEWNLDGSL-LCTTSKDKKLNIIDPRD---------------GTIVSSVEAH  209 (493)
T ss_pred             EEECCC------CeEEEEEcCCCCceEEEEEECCCCE-EEEecCCCEEEEEECCC---------------CcEEEEEecC
Confidence            999998      7888899999999999999999994 67999999999999997               3345566777


Q ss_pred             Ccc-eeeEEEccCCCeEEEEecCCCCCCCCCCeEEEEEccc
Q 021657          243 RDK-VVDFHWNASDPWTVVSVSDDCDSTGGGGTLQIWRMSD  282 (309)
Q Consensus       243 ~~~-v~~~~~~~~~~~~~~s~s~d~~s~~~dg~v~vw~~~~  282 (309)
                      ... +..+.|.+++..++.++.    +++.|+.|++||++.
T Consensus       210 ~~~~~~~~~w~~~~~~ivt~G~----s~s~Dr~VklWDlr~  246 (493)
T PTZ00421        210 ASAKSQRCLWAKRKDLIITLGC----SKSQQRQIMLWDTRK  246 (493)
T ss_pred             CCCcceEEEEcCCCCeEEEEec----CCCCCCeEEEEeCCC
Confidence            754 457789998776664432    345679999999985

>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=99.98  E-value=8.9e-32  Score=213.96  Aligned_cols=230  Identities=21%  Similarity=0.414  Sum_probs=189.3

Q ss_pred             EEEECC-CCCEEEEecCCCcEEEEeCCccccccccCCccccccCCCCceeecCCCCCCCCcccCCCCCcCcccccccccC
Q 021657           14 ALAMCP-TEPYVLSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHED   92 (309)
Q Consensus        14 ~~~~~~-~~~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   92 (309)
                      .+..++ .+++|+|||.||.|++|++.......                                  +......++.|..
T Consensus        29 ~Lq~da~~~ryLfTgGRDg~i~~W~~~~d~~~~----------------------------------s~~~~asme~HsD   74 (735)
T KOG0308|consen   29 ALQLDAPNGRYLFTGGRDGIIRLWSVTQDSNEP----------------------------------STPYIASMEHHSD   74 (735)
T ss_pred             hccccCCCCceEEecCCCceEEEeccccccCCc----------------------------------ccchhhhhhhhHh
Confidence            445554 57789999999999999987431111                                  1123567888999


Q ss_pred             CeEEEEEecCCCcEEEEEcCCCeEEEEEcCCCCcceEEEeeccCCceeEEEe-ccCCCCeEEEEcCCCcEEEEecCCCCC
Q 021657           93 TVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDW-NPLDDNLILTGSADNSVRMFDRRNLTS  171 (309)
Q Consensus        93 ~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~-~~~~~~~l~~~~~dg~i~i~d~~~~~~  171 (309)
                      .|+++....++ +.|++++.|-+|++|+...+..-+...+..|.+.|.|+++ .+ +..++|+|+.|+.|.+||+.+...
T Consensus        75 WVNDiiL~~~~-~tlIS~SsDtTVK~W~~~~~~~~c~stir~H~DYVkcla~~ak-~~~lvaSgGLD~~IflWDin~~~~  152 (735)
T KOG0308|consen   75 WVNDIILCGNG-KTLISASSDTTVKVWNAHKDNTFCMSTIRTHKDYVKCLAYIAK-NNELVASGGLDRKIFLWDINTGTA  152 (735)
T ss_pred             HHhhHHhhcCC-CceEEecCCceEEEeecccCcchhHhhhhcccchheeeeeccc-CceeEEecCCCccEEEEEccCcch
Confidence            99999999888 6899999999999999987753467778899999999999 66 889999999999999999997311


Q ss_pred             --CCC--CCceeeec-cCCCCeeEEEEecCCCcEEEEecCCCcEEEEeCCcccccccCCCCCcCCCCceeeeecCCCcce
Q 021657          172 --NGV--GSPINKFE-GHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKV  246 (309)
Q Consensus       172 --~~~--~~~~~~~~-~~~~~v~~~~~~~~~~~l~~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v  246 (309)
                        ...  ......+. +++..|++++.++.|. ++++|+.++.+++||.+.               ...+..+.||...|
T Consensus       153 ~l~~s~n~~t~~sl~sG~k~siYSLA~N~t~t-~ivsGgtek~lr~wDprt---------------~~kimkLrGHTdNV  216 (735)
T KOG0308|consen  153 TLVASFNNVTVNSLGSGPKDSIYSLAMNQTGT-IIVSGGTEKDLRLWDPRT---------------CKKIMKLRGHTDNV  216 (735)
T ss_pred             hhhhhccccccccCCCCCccceeeeecCCcce-EEEecCcccceEEecccc---------------ccceeeeeccccce
Confidence              000  11122233 7788999999999996 688999999999999998               44567788999999


Q ss_pred             eeEEEccCCCeEEEEecCCCCCCCCCCeEEEEEccccccCChhhHhHhhhcccceEEEeeeCC
Q 021657          247 VDFHWNASDPWTVVSVSDDCDSTGGGGTLQIWRMSDLIYRPQDEVLAELEKFKAHVISCTSKP  309 (309)
Q Consensus       247 ~~~~~~~~~~~~~~s~s~d~~s~~~dg~v~vw~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~P  309 (309)
                      ..+..+++|..++        |++.||+|++||+.      ..+|+.++..|+..|+++..+|
T Consensus       217 r~ll~~dDGt~~l--------s~sSDgtIrlWdLg------qQrCl~T~~vH~e~VWaL~~~~  265 (735)
T KOG0308|consen  217 RVLLVNDDGTRLL--------SASSDGTIRLWDLG------QQRCLATYIVHKEGVWALQSSP  265 (735)
T ss_pred             EEEEEcCCCCeEe--------ecCCCceEEeeecc------ccceeeeEEeccCceEEEeeCC
Confidence            9999999999988        88888999999999      8999999999999999998765

>KOG0269 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.98  E-value=1.5e-31  Score=216.52  Aligned_cols=227  Identities=15%  Similarity=0.287  Sum_probs=189.2

Q ss_pred             EEEEECC-CCCEEEEecCCCcEEEEeCCccccccccCCccccccCCCCceeecCCCCCCCCcccCCCCCcCccccccccc
Q 021657           13 FALAMCP-TEPYVLSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHE   91 (309)
Q Consensus        13 ~~~~~~~-~~~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   91 (309)
                      ..+.|+. +.++|||++..|.|.+||+...                                     ...+.+..+..|.
T Consensus        91 ~DVkW~~~~~NlIAT~s~nG~i~vWdlnk~-------------------------------------~rnk~l~~f~EH~  133 (839)
T KOG0269|consen   91 ADVKWGQLYSNLIATCSTNGVISVWDLNKS-------------------------------------IRNKLLTVFNEHE  133 (839)
T ss_pred             hhcccccchhhhheeecCCCcEEEEecCcc-------------------------------------ccchhhhHhhhhc
Confidence            3456664 4678999999999999999742                                     1233456788999


Q ss_pred             CCeEEEEEecCCCcEEEEEcCCCeEEEEEcCCCCcceEEEeeccCCceeEEEeccCCCCeEEEEcCCCcEEEEecCCCCC
Q 021657           92 DTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTS  171 (309)
Q Consensus        92 ~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~  171 (309)
                      ..++++.|++..+++|++|+.||+|++||++..+  ....+.+....|+.+.|+|..++.|+++...|.+++||+|.+  
T Consensus       134 Rs~~~ldfh~tep~iliSGSQDg~vK~~DlR~~~--S~~t~~~nSESiRDV~fsp~~~~~F~s~~dsG~lqlWDlRqp--  209 (839)
T KOG0269|consen  134 RSANKLDFHSTEPNILISGSQDGTVKCWDLRSKK--SKSTFRSNSESIRDVKFSPGYGNKFASIHDSGYLQLWDLRQP--  209 (839)
T ss_pred             cceeeeeeccCCccEEEecCCCceEEEEeeeccc--ccccccccchhhhceeeccCCCceEEEecCCceEEEeeccCc--
Confidence            9999999999999999999999999999999877  456666788899999999988899999999999999999986  


Q ss_pred             CCCCCceeeeccCCCCeeEEEEecCCCcEEEEecCCCcEEEEeCCcccccccCCCCCcCCCCceeeeecCCCcceeeEEE
Q 021657          172 NGVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKVVDFHW  251 (309)
Q Consensus       172 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~  251 (309)
                         .++...+.+|.++|.++.|+|++.+ ||+|+.|+.|+|||+......             ..... ....+|..++|
T Consensus       210 ---~r~~~k~~AH~GpV~c~nwhPnr~~-lATGGRDK~vkiWd~t~~~~~-------------~~~tI-nTiapv~rVkW  271 (839)
T KOG0269|consen  210 ---DRCEKKLTAHNGPVLCLNWHPNREW-LATGGRDKMVKIWDMTDSRAK-------------PKHTI-NTIAPVGRVKW  271 (839)
T ss_pred             ---hhHHHHhhcccCceEEEeecCCCce-eeecCCCccEEEEeccCCCcc-------------ceeEE-eecceeeeeee
Confidence               6778889999999999999998885 789999999999999862211             11111 23468999999


Q ss_pred             ccCCCeEEEEecCCCCCCCCCCeEEEEEccccccCChhhHhHhhhcccceEEEeeeC
Q 021657          252 NASDPWTVVSVSDDCDSTGGGGTLQIWRMSDLIYRPQDEVLAELEKFKAHVISCTSK  308 (309)
Q Consensus       252 ~~~~~~~~~s~s~d~~s~~~dg~v~vw~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~  308 (309)
                      -|..++.+++++.     ..|-.|+|||++.     .--+..++..|...++.++|.
T Consensus       272 RP~~~~hLAtcsm-----v~dtsV~VWDvrR-----PYIP~~t~~eH~~~vt~i~W~  318 (839)
T KOG0269|consen  272 RPARSYHLATCSM-----VVDTSVHVWDVRR-----PYIPYATFLEHTDSVTGIAWD  318 (839)
T ss_pred             ccCccchhhhhhc-----cccceEEEEeecc-----ccccceeeeccCccccceecc
Confidence            9999999998854     4678999999984     456778889999999999884

>KOG0293 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.98  E-value=6.7e-31  Score=198.65  Aligned_cols=246  Identities=21%  Similarity=0.303  Sum_probs=191.0

Q ss_pred             cccCCCCCcceEEEEECCCCCEEEEecCCCcEEEEeCCccccccccCCccccccC---CCCceeecCCCCCCCCcccCCC
Q 021657            2 EILTGHQDNAEFALAMCPTEPYVLSGGKDKSVVLWSIQDHITSSATDPATAKSAG---SSGSIIKQSPKPGDGNDKAADG   78 (309)
Q Consensus         2 ~~l~~H~~~~V~~~~~~~~~~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~   78 (309)
                      ++|.||.. +|.-+.||||.++|++|+.|..+++||+.++.....+......+..   -......+..+..+..+..|+.
T Consensus       263 ~tlvgh~~-~V~yi~wSPDdryLlaCg~~e~~~lwDv~tgd~~~~y~~~~~~S~~sc~W~pDg~~~V~Gs~dr~i~~wdl  341 (519)
T KOG0293|consen  263 KTLVGHSQ-PVSYIMWSPDDRYLLACGFDEVLSLWDVDTGDLRHLYPSGLGFSVSSCAWCPDGFRFVTGSPDRTIIMWDL  341 (519)
T ss_pred             eeeecccC-ceEEEEECCCCCeEEecCchHheeeccCCcchhhhhcccCcCCCcceeEEccCCceeEecCCCCcEEEecC
Confidence            57899999 8999999999999999999999999999998655544433111000   0111122455666677777776


Q ss_pred             CCcCcccccccc-cCCeEEEEEecCCCcEEEEEcCCCeEEEEEcCCCCcceEEEeeccCCceeEEEeccCCCCeEEEEcC
Q 021657           79 PSVGPRGIYNGH-EDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSA  157 (309)
Q Consensus        79 ~~~~~~~~~~~~-~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~  157 (309)
                      .... ....++- ...|.+++..+|| ..+++.+.|..|++++.++..  ... +.....+|++++.+. +++++++.-.
T Consensus       342 Dgn~-~~~W~gvr~~~v~dlait~Dg-k~vl~v~~d~~i~l~~~e~~~--dr~-lise~~~its~~iS~-d~k~~LvnL~  415 (519)
T KOG0293|consen  342 DGNI-LGNWEGVRDPKVHDLAITYDG-KYVLLVTVDKKIRLYNREARV--DRG-LISEEQPITSFSISK-DGKLALVNLQ  415 (519)
T ss_pred             Ccch-hhcccccccceeEEEEEcCCC-cEEEEEecccceeeechhhhh--hhc-cccccCceeEEEEcC-CCcEEEEEcc
Confidence            5432 2233332 2569999999999 667777799999999987665  222 233457899999999 9999999999


Q ss_pred             CCcEEEEecCCCCCCCCCCceeeeccCCCC--eeEEEEecCCCcEEEEecCCCcEEEEeCCcccccccCCCCCcCCCCce
Q 021657          158 DNSVRMFDRRNLTSNGVGSPINKFEGHSAA--VLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGL  235 (309)
Q Consensus       158 dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~--v~~~~~~~~~~~l~~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~  235 (309)
                      +..|++||+..      .+.++.+.+|+..  +-.-+|..-...++|+|++|+.|+||+...               ..+
T Consensus       416 ~qei~LWDl~e------~~lv~kY~Ghkq~~fiIrSCFgg~~~~fiaSGSED~kvyIWhr~s---------------gkl  474 (519)
T KOG0293|consen  416 DQEIHLWDLEE------NKLVRKYFGHKQGHFIIRSCFGGGNDKFIASGSEDSKVYIWHRIS---------------GKL  474 (519)
T ss_pred             cCeeEEeecch------hhHHHHhhcccccceEEEeccCCCCcceEEecCCCceEEEEEccC---------------Cce
Confidence            99999999997      8889999998765  334456655544789999999999999988               667


Q ss_pred             eeeecCCCcceeeEEEccCCCeEEEEecCCCCCCCCCCeEEEEEccc
Q 021657          236 FFQHAGHRDKVVDFHWNASDPWTVVSVSDDCDSTGGGGTLQIWRMSD  282 (309)
Q Consensus       236 ~~~~~~~~~~v~~~~~~~~~~~~~~s~s~d~~s~~~dg~v~vw~~~~  282 (309)
                      +..+.||...|++++|+|.++.++|++|+|       |+|+||....
T Consensus       475 l~~LsGHs~~vNcVswNP~~p~m~ASasDD-------gtIRIWg~~~  514 (519)
T KOG0293|consen  475 LAVLSGHSKTVNCVSWNPADPEMFASASDD-------GTIRIWGPSD  514 (519)
T ss_pred             eEeecCCcceeeEEecCCCCHHHhhccCCC-------CeEEEecCCc
Confidence            889999999999999999999999977777       9999999874

>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]

Probab=99.98  E-value=6.5e-31  Score=186.40  Aligned_cols=243  Identities=17%  Similarity=0.262  Sum_probs=193.0

Q ss_pred             cccCCCCCcceEEEEECCCCCEEEEecCCCcEEEEeCCccccccccCCcccc-ccCCCCceeecCCCCCCCCcccCCCCC
Q 021657            2 EILTGHQDNAEFALAMCPTEPYVLSGGKDKSVVLWSIQDHITSSATDPATAK-SAGSSGSIIKQSPKPGDGNDKAADGPS   80 (309)
Q Consensus         2 ~~l~~H~~~~V~~~~~~~~~~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (309)
                      -++.||++ +|++..++.+..+-|+++.|=+.+|||.-++.....+.....+ ..........+..+.....+++++...
T Consensus        53 gtfeghkg-avw~~~l~~na~~aasaaadftakvw~a~tgdelhsf~hkhivk~~af~~ds~~lltgg~ekllrvfdln~  131 (334)
T KOG0278|consen   53 GTFEGHKG-AVWSATLNKNATRAASAAADFTAKVWDAVTGDELHSFEHKHIVKAVAFSQDSNYLLTGGQEKLLRVFDLNR  131 (334)
T ss_pred             EeeeccCc-ceeeeecCchhhhhhhhcccchhhhhhhhhhhhhhhhhhhheeeeEEecccchhhhccchHHHhhhhhccC
Confidence            47899999 9999999999999999999999999999888655555443333 112222233444555666777777765


Q ss_pred             c-CcccccccccCCeEEEEEecCCCcEEEEEcCCCeEEEEEcCCCCcceEEEeeccCCceeEEEeccCCCCeEEEEcCCC
Q 021657           81 V-GPRGIYNGHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADN  159 (309)
Q Consensus        81 ~-~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg  159 (309)
                      . .+...+.+|.+.|..+.|+..+ +.+++...|++|++||.+++.  .++.+. .+.+|+++.+++ +++++.++ ..+
T Consensus       132 p~App~E~~ghtg~Ir~v~wc~eD-~~iLSSadd~tVRLWD~rTgt--~v~sL~-~~s~VtSlEvs~-dG~ilTia-~gs  205 (334)
T KOG0278|consen  132 PKAPPKEISGHTGGIRTVLWCHED-KCILSSADDKTVRLWDHRTGT--EVQSLE-FNSPVTSLEVSQ-DGRILTIA-YGS  205 (334)
T ss_pred             CCCCchhhcCCCCcceeEEEeccC-ceEEeeccCCceEEEEeccCc--EEEEEe-cCCCCcceeecc-CCCEEEEe-cCc
Confidence            4 4678889999999999999887 778888999999999999998  555553 467899999999 88877776 467


Q ss_pred             cEEEEecCCCCCCCCCCceeeeccCCCCeeEEEEecCCCcEEEEecCCCcEEEEeCCcccccccCCCCCcCCCCceeee-
Q 021657          160 SVRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQ-  238 (309)
Q Consensus       160 ~i~i~d~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~-  238 (309)
                      .|.+||..+      ..++..++ ....|.+.+++|+.. ++++|++|..++.||..+.               ..+.. 
T Consensus       206 sV~Fwdaks------f~~lKs~k-~P~nV~SASL~P~k~-~fVaGged~~~~kfDy~Tg---------------eEi~~~  262 (334)
T KOG0278|consen  206 SVKFWDAKS------FGLLKSYK-MPCNVESASLHPKKE-FFVAGGEDFKVYKFDYNTG---------------EEIGSY  262 (334)
T ss_pred             eeEEecccc------ccceeecc-CccccccccccCCCc-eEEecCcceEEEEEeccCC---------------ceeeec
Confidence            899999999      77888877 456799999999997 5789999999999999982               22333 


Q ss_pred             ecCCCcceeeEEEccCCCeEEEEecCCCCCCCCCCeEEEEEccc
Q 021657          239 HAGHRDKVVDFHWNASDPWTVVSVSDDCDSTGGGGTLQIWRMSD  282 (309)
Q Consensus       239 ~~~~~~~v~~~~~~~~~~~~~~s~s~d~~s~~~dg~v~vw~~~~  282 (309)
                      ..+|.++|.++.|+|+|.. .+       +|+.||+|++|.+..
T Consensus       263 nkgh~gpVhcVrFSPdGE~-yA-------sGSEDGTirlWQt~~  298 (334)
T KOG0278|consen  263 NKGHFGPVHCVRFSPDGEL-YA-------SGSEDGTIRLWQTTP  298 (334)
T ss_pred             ccCCCCceEEEEECCCCce-ee-------ccCCCceEEEEEecC
Confidence            3789999999999998875 44       566669999999984

>KOG0300 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.97  E-value=1.3e-30  Score=191.20  Aligned_cols=264  Identities=18%  Similarity=0.337  Sum_probs=194.3

Q ss_pred             CcccCCCCCcceEEEEECCCCCEEEEecCCCcEEEEeCCccccccccCCccccccCCCCceeecC--CCCCCCCcccCCC
Q 021657            1 MEILTGHQDNAEFALAMCPTEPYVLSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQS--PKPGDGNDKAADG   78 (309)
Q Consensus         1 l~~l~~H~~~~V~~~~~~~~~~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~   78 (309)
                      |.++.||.+ .|+++.|++.+.+++|++.|++..||...-.-...........  ..........  ....++....-..
T Consensus       183 L~~Y~GH~G-SVNsikfh~s~~L~lTaSGD~taHIW~~av~~~vP~~~a~~~h--SsEeE~e~sDe~~~d~d~~~~sD~~  259 (481)
T KOG0300|consen  183 LATYTGHTG-SVNSIKFHNSGLLLLTASGDETAHIWKAAVNWEVPSNNAPSDH--SSEEEEEHSDEHNRDTDSSEKSDGH  259 (481)
T ss_pred             eeeeccccc-ceeeEEeccccceEEEccCCcchHHHHHhhcCcCCCCCCCCCC--CchhhhhcccccccccccccccCCc
Confidence            357899999 8999999999999999999999999984422111110000000  0000000000  0000111111111


Q ss_pred             CCcCcccccccccCCeEEEEEecCCCcEEEEEcCCCeEEEEEcCCCCcceEEEeeccCCceeEEEeccCCCCeEEEEcCC
Q 021657           79 PSVGPRGIYNGHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSAD  158 (309)
Q Consensus        79 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d  158 (309)
                      .-.-++..+.+|.+.|.+..|...| ..+++++.|.+..+||+++++  .+..+.+|....+-++-+| ..+++++.+.|
T Consensus       260 tiRvPl~~ltgH~~vV~a~dWL~gg-~Q~vTaSWDRTAnlwDVEtge--~v~~LtGHd~ELtHcstHp-tQrLVvTsSrD  335 (481)
T KOG0300|consen  260 TIRVPLMRLTGHRAVVSACDWLAGG-QQMVTASWDRTANLWDVETGE--VVNILTGHDSELTHCSTHP-TQRLVVTSSRD  335 (481)
T ss_pred             eeeeeeeeeeccccceEehhhhcCc-ceeeeeeccccceeeeeccCc--eeccccCcchhccccccCC-cceEEEEeccC
Confidence            2234677889999999999999877 789999999999999999999  8999999999999999999 99999999999


Q ss_pred             CcEEEEecCCCCCCCCCCceeeeccCCCCeeEEEEecCCCcEEEEecCCCcEEEEeCCcccccccCCCCCcCCCCceeee
Q 021657          159 NSVRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQ  238 (309)
Q Consensus       159 g~i~i~d~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~  238 (309)
                      .+.++||++..     -..+..|++|...|+++.|..+.+  +++|++|.+|++||++++..++              .+
T Consensus       336 tTFRLWDFRea-----I~sV~VFQGHtdtVTS~vF~~dd~--vVSgSDDrTvKvWdLrNMRspl--------------AT  394 (481)
T KOG0300|consen  336 TTFRLWDFREA-----IQSVAVFQGHTDTVTSVVFNTDDR--VVSGSDDRTVKVWDLRNMRSPL--------------AT  394 (481)
T ss_pred             ceeEeccchhh-----cceeeeecccccceeEEEEecCCc--eeecCCCceEEEeeeccccCcc--------------ee
Confidence            99999999963     567888999999999999999887  4699999999999999855432              22


Q ss_pred             ecCCCcceeeEEEccCCCeEEEEecCCCCCCCCCCeEEEEEccccccCChhhHhH-----hhhcccceEEEeeeC
Q 021657          239 HAGHRDKVVDFHWNASDPWTVVSVSDDCDSTGGGGTLQIWRMSDLIYRPQDEVLA-----ELEKFKAHVISCTSK  308 (309)
Q Consensus       239 ~~~~~~~v~~~~~~~~~~~~~~s~s~d~~s~~~dg~v~vw~~~~~~~~~~~~~~~-----~~~~h~~~v~~~~~~  308 (309)
                      .. ...+++.++.+..++ +++.--++       ..|++||++       +..+.     .-.+|..-|.|++|.
T Consensus       395 IR-tdS~~NRvavs~g~~-iIAiPhDN-------RqvRlfDln-------G~RlaRlPrtsRqgHrRMV~c~AW~  453 (481)
T KOG0300|consen  395 IR-TDSPANRVAVSKGHP-IIAIPHDN-------RQVRLFDLN-------GNRLARLPRTSRQGHRRMVTCCAWL  453 (481)
T ss_pred             ee-cCCccceeEeecCCc-eEEeccCC-------ceEEEEecC-------CCccccCCcccccccceeeeeeecc
Confidence            22 356788888887444 55544444       899999998       33333     335899999999995

>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]

Probab=99.97  E-value=1.3e-30  Score=214.64  Aligned_cols=244  Identities=21%  Similarity=0.351  Sum_probs=198.6

Q ss_pred             cCCCCCcceEEEEECCCCCEEEEecCCCcEEEEeCCccccccccCCccccccCCCCceeecCCCCCCCCcccCCCCCcCc
Q 021657            4 LTGHQDNAEFALAMCPTEPYVLSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGP   83 (309)
Q Consensus         4 l~~H~~~~V~~~~~~~~~~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   83 (309)
                      |.||.+ .|++++|..-+.+|++|+.|.+++|||..++.+.......................+..+..+++|+..+...
T Consensus       245 l~GH~g-~V~~l~~~~~~~~lvsgS~D~t~rvWd~~sg~C~~~l~gh~stv~~~~~~~~~~~sgs~D~tVkVW~v~n~~~  323 (537)
T KOG0274|consen  245 LVGHFG-GVWGLAFPSGGDKLVSGSTDKTERVWDCSTGECTHSLQGHTSSVRCLTIDPFLLVSGSRDNTVKVWDVTNGAC  323 (537)
T ss_pred             ccCCCC-CceeEEEecCCCEEEEEecCCcEEeEecCCCcEEEEecCCCceEEEEEccCceEeeccCCceEEEEeccCcce
Confidence            899999 8999999887889999999999999999998766655533222221222222333377899999999999999


Q ss_pred             ccccccccCCeEEEEEecCCCcEEEEEcCCCeEEEEEcCCCCcceEEEeeccCCceeEEEeccCCCCeEEEEcCCCcEEE
Q 021657           84 RGIYNGHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRM  163 (309)
Q Consensus        84 ~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i  163 (309)
                      +..+.+|..+|.++..+  + .++++|+.|++|++||+.+++  +...+.+|...|+++.+.+ . ..+++|+.|+.|++
T Consensus       324 l~l~~~h~~~V~~v~~~--~-~~lvsgs~d~~v~VW~~~~~~--cl~sl~gH~~~V~sl~~~~-~-~~~~Sgs~D~~Ikv  396 (537)
T KOG0274|consen  324 LNLLRGHTGPVNCVQLD--E-PLLVSGSYDGTVKVWDPRTGK--CLKSLSGHTGRVYSLIVDS-E-NRLLSGSLDTTIKV  396 (537)
T ss_pred             EEEeccccccEEEEEec--C-CEEEEEecCceEEEEEhhhce--eeeeecCCcceEEEEEecC-c-ceEEeeeeccceEe
Confidence            99999999999999997  3 689999999999999999888  8999999999999998866 4 99999999999999


Q ss_pred             EecCCCCCCCCC-CceeeeccCCCCeeEEEEecCCCcEEEEecCCCcEEEEeCCcccccccCCCCCcCCCCceeeeecC-
Q 021657          164 FDRRNLTSNGVG-SPINKFEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAG-  241 (309)
Q Consensus       164 ~d~~~~~~~~~~-~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~-  241 (309)
                      ||+++      . +++..+.+|..-+..+.+.  +. ++++++.|+.|++||...               .+++..+.+ 
T Consensus       397 Wdl~~------~~~c~~tl~~h~~~v~~l~~~--~~-~Lvs~~aD~~Ik~WD~~~---------------~~~~~~~~~~  452 (537)
T KOG0274|consen  397 WDLRT------KRKCIHTLQGHTSLVSSLLLR--DN-FLVSSSADGTIKLWDAEE---------------GECLRTLEGR  452 (537)
T ss_pred             ecCCc------hhhhhhhhcCCcccccccccc--cc-eeEeccccccEEEeeccc---------------CceeeeeccC
Confidence            99999      7 8999999999888766654  44 456999999999999988               455666677 


Q ss_pred             CCcceeeEEEccCCCeEEEEecCCCCCCCCCCeEEEEEccccccCChhhHhHhh
Q 021657          242 HRDKVVDFHWNASDPWTVVSVSDDCDSTGGGGTLQIWRMSDLIYRPQDEVLAEL  295 (309)
Q Consensus       242 ~~~~v~~~~~~~~~~~~~~s~s~d~~s~~~dg~v~vw~~~~~~~~~~~~~~~~~  295 (309)
                      |...|..+++.  .+ .+++++.       ||.+++||++      ++.+...+
T Consensus       453 ~~~~v~~l~~~--~~-~il~s~~-------~~~~~l~dl~------~~~~~~~l  490 (537)
T KOG0274|consen  453 HVGGVSALALG--KE-EILCSSD-------DGSVKLWDLR------SGTLIRTL  490 (537)
T ss_pred             CcccEEEeecC--cc-eEEEEec-------CCeeEEEecc------cCchhhhh
Confidence            67888888886  23 3554444       4999999999      56555554

>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.97  E-value=2.1e-30  Score=205.50  Aligned_cols=205  Identities=20%  Similarity=0.307  Sum_probs=188.4

Q ss_pred             CCCCCCcccCCCCCcCcccccccccCCeEEEEEecCCCcEEEEEcCCCeEEEEEcCCCCcceEEEeeccCCceeEEEecc
Q 021657           67 KPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNP  146 (309)
Q Consensus        67 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~  146 (309)
                      +...+.+.+|+..+...++.+.-..-+|.+..|-+.. +.+++|++|..|++|+.++.+  .++.+.+|.+-|++++.+|
T Consensus        31 ~LynG~V~IWnyetqtmVksfeV~~~PvRa~kfiaRk-nWiv~GsDD~~IrVfnynt~e--kV~~FeAH~DyIR~iavHP  107 (794)
T KOG0276|consen   31 ALYNGDVQIWNYETQTMVKSFEVSEVPVRAAKFIARK-NWIVTGSDDMQIRVFNYNTGE--KVKTFEAHSDYIRSIAVHP  107 (794)
T ss_pred             eeecCeeEEEecccceeeeeeeecccchhhheeeecc-ceEEEecCCceEEEEecccce--eeEEeeccccceeeeeecC
Confidence            4457889999999999999999899999999999876 899999999999999999998  7899999999999999999


Q ss_pred             CCCCeEEEEcCCCcEEEEecCCCCCCCCCCceeeeccCCCCeeEEEEecCCCcEEEEecCCCcEEEEeCCcccccccCCC
Q 021657          147 LDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGP  226 (309)
Q Consensus       147 ~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~dg~i~iwd~~~~~~~~~~~~  226 (309)
                       ...++++++.|-.|++||.+..     ..+.++|++|...|.+++|+|....-||+++-|++|++|.+..         
T Consensus       108 -t~P~vLtsSDDm~iKlW~we~~-----wa~~qtfeGH~HyVMqv~fnPkD~ntFaS~sLDrTVKVWslgs---------  172 (794)
T KOG0276|consen  108 -TLPYVLTSSDDMTIKLWDWENE-----WACEQTFEGHEHYVMQVAFNPKDPNTFASASLDRTVKVWSLGS---------  172 (794)
T ss_pred             -CCCeEEecCCccEEEEeeccCc-----eeeeeEEcCcceEEEEEEecCCCccceeeeeccccEEEEEcCC---------
Confidence             8999999999999999999875     7888999999999999999998888899999999999999987         


Q ss_pred             CCcCCCCceeeeecCCCcceeeEEEccC--CCeEEEEecCCCCCCCCCCeEEEEEccccccCChhhHhHhhhcccceEEE
Q 021657          227 RTTNYPAGLFFQHAGHRDKVVDFHWNAS--DPWTVVSVSDDCDSTGGGGTLQIWRMSDLIYRPQDEVLAELEKFKAHVIS  304 (309)
Q Consensus       227 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~--~~~~~~s~s~d~~s~~~dg~v~vw~~~~~~~~~~~~~~~~~~~h~~~v~~  304 (309)
                            ..+.+++.+|...|+++.+-+-  .++++        ||+.|.+++|||.+      +..|+++++||...|..
T Consensus       173 ------~~~nfTl~gHekGVN~Vdyy~~gdkpylI--------sgaDD~tiKvWDyQ------tk~CV~TLeGHt~Nvs~  232 (794)
T KOG0276|consen  173 ------PHPNFTLEGHEKGVNCVDYYTGGDKPYLI--------SGADDLTIKVWDYQ------TKSCVQTLEGHTNNVSF  232 (794)
T ss_pred             ------CCCceeeeccccCcceEEeccCCCcceEE--------ecCCCceEEEeecc------hHHHHHHhhcccccceE
Confidence                  5567889999999999999764  35666        66666999999999      89999999999999999


Q ss_pred             eeeCC
Q 021657          305 CTSKP  309 (309)
Q Consensus       305 ~~~~P  309 (309)
                      +.|||
T Consensus       233 v~fhp  237 (794)
T KOG0276|consen  233 VFFHP  237 (794)
T ss_pred             EEecC
Confidence            99998

>KOG0302 consensus Ribosome Assembly protein [General function prediction only]

Probab=99.97  E-value=3.6e-30  Score=192.53  Aligned_cols=229  Identities=18%  Similarity=0.370  Sum_probs=181.5

Q ss_pred             CCCCCcceEEEEECCCC--CEEEEecCCCcEEEEeCCccccccccCCccccccCCCCceeecCCCCCCCCcccCCCCCcC
Q 021657            5 TGHQDNAEFALAMCPTE--PYVLSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVG   82 (309)
Q Consensus         5 ~~H~~~~V~~~~~~~~~--~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   82 (309)
                      -+|.+ .|+.+..++-+  .+.++-+..|.|+||++.............                        ......+
T Consensus       148 i~h~g-~~NRvr~~~~~~~~~~aswse~G~V~Vw~l~~~l~~l~~~~~~------------------------~~~s~~~  202 (440)
T KOG0302|consen  148 IPHYG-GINRVRVSRLGNEVLCASWSENGRVQVWDLAPHLNALSEPGLE------------------------VKDSEFR  202 (440)
T ss_pred             ccccc-ccceeeecccCCcceeeeecccCcEEEEEchhhhhhhcCcccc------------------------ccccccC
Confidence            35777 78888887754  567788899999999997643322211100                        0114567


Q ss_pred             cccccccccCCeEEEEEecCCCcEEEEEcCCCeEEEEEcCCCCcce-EEEeeccCCceeEEEeccCCCCeEEEEcCCCcE
Q 021657           83 PRGIYNGHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPV-IKVEKAHDADLHCVDWNPLDDNLILTGSADNSV  161 (309)
Q Consensus        83 ~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~-~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i  161 (309)
                      ++..+.+|...=..++|+|.....|++|.--+.|++|...++.... ...+.+|...|-.++|+|.....|++|+.||+|
T Consensus       203 Pl~t~~ghk~EGy~LdWSp~~~g~LlsGDc~~~I~lw~~~~g~W~vd~~Pf~gH~~SVEDLqWSptE~~vfaScS~DgsI  282 (440)
T KOG0302|consen  203 PLFTFNGHKGEGYGLDWSPIKTGRLLSGDCVKGIHLWEPSTGSWKVDQRPFTGHTKSVEDLQWSPTEDGVFASCSCDGSI  282 (440)
T ss_pred             ceEEecccCccceeeecccccccccccCccccceEeeeeccCceeecCccccccccchhhhccCCccCceEEeeecCceE
Confidence            8889999999999999999654468898888999999998876432 234567999999999999888899999999999


Q ss_pred             EEEecCCCCCCCCCCceeeeccCCCCeeEEEEecCCCcEEEEecCCCcEEEEeCCcccccccCCCCCcCCCCceeeeecC
Q 021657          162 RMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAG  241 (309)
Q Consensus       162 ~i~d~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~  241 (309)
                      +|||+|...    .+.....+.|.+.|+.|.|+..-. +||+|+.||+++|||+|....            .+++..+.-
T Consensus       283 rIWDiRs~~----~~~~~~~kAh~sDVNVISWnr~~~-lLasG~DdGt~~iwDLR~~~~------------~~pVA~fk~  345 (440)
T KOG0302|consen  283 RIWDIRSGP----KKAAVSTKAHNSDVNVISWNRREP-LLASGGDDGTLSIWDLRQFKS------------GQPVATFKY  345 (440)
T ss_pred             EEEEecCCC----ccceeEeeccCCceeeEEccCCcc-eeeecCCCceEEEEEhhhccC------------CCcceeEEe
Confidence            999999843    233334488999999999999888 789999999999999998432            357788899


Q ss_pred             CCcceeeEEEccCCCeEEEEecCCCCCCCCCCeEEEEEccc
Q 021657          242 HRDKVVDFHWNASDPWTVVSVSDDCDSTGGGGTLQIWRMSD  282 (309)
Q Consensus       242 ~~~~v~~~~~~~~~~~~~~s~s~d~~s~~~dg~v~vw~~~~  282 (309)
                      |..+|+++.|+|.....++++|.|       ..|.+||+.-
T Consensus       346 Hk~pItsieW~p~e~s~iaasg~D-------~QitiWDlsv  379 (440)
T KOG0302|consen  346 HKAPITSIEWHPHEDSVIAASGED-------NQITIWDLSV  379 (440)
T ss_pred             ccCCeeEEEeccccCceEEeccCC-------CcEEEEEeec
Confidence            999999999999988888755544       9999999973

>KOG2096 consensus WD40 repeat protein [General function prediction only]

Probab=99.97  E-value=3.7e-29  Score=183.49  Aligned_cols=280  Identities=16%  Similarity=0.214  Sum_probs=188.3

Q ss_pred             cccCCCCCcceEEEEECCCCCEEEEecCCCcEEEEeCCccccccccCC---------ccccccCCCCceeecCCCCCCCC
Q 021657            2 EILTGHQDNAEFALAMCPTEPYVLSGGKDKSVVLWSIQDHITSSATDP---------ATAKSAGSSGSIIKQSPKPGDGN   72 (309)
Q Consensus         2 ~~l~~H~~~~V~~~~~~~~~~~l~t~~~dg~i~vwd~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~   72 (309)
                      .+|+||.+ .|++++|+.||++|+|++.|++||||++++-....+...         ...........+.....  .+..
T Consensus        80 ~~LKgH~~-~vt~~~FsSdGK~lat~~~Dr~Ir~w~~~DF~~~eHr~~R~nve~dhpT~V~FapDc~s~vv~~~--~g~~  156 (420)
T KOG2096|consen   80 SVLKGHKK-EVTDVAFSSDGKKLATISGDRSIRLWDVRDFENKEHRCIRQNVEYDHPTRVVFAPDCKSVVVSVK--RGNK  156 (420)
T ss_pred             hhhhccCC-ceeeeEEcCCCceeEEEeCCceEEEEecchhhhhhhhHhhccccCCCceEEEECCCcceEEEEEc--cCCE
Confidence            57999999 899999999999999999999999999987532222111         11111111111111111  2222


Q ss_pred             cccCCCCCc------------CcccccccccCCeEEEEEecCCCcEEEEEcCCCeEEEEEcCCCCcceEEEeeccCCcee
Q 021657           73 DKAADGPSV------------GPRGIYNGHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLH  140 (309)
Q Consensus        73 ~~~~~~~~~------------~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~  140 (309)
                      ++++.....            ..+..-+.|+-.|..+-....+ .++++++.|..|.+|++. ++  ...........-+
T Consensus       157 l~vyk~~K~~dG~~~~~~v~~D~~~f~~kh~v~~i~iGiA~~~-k~imsas~dt~i~lw~lk-Gq--~L~~idtnq~~n~  232 (420)
T KOG2096|consen  157 LCVYKLVKKTDGSGSHHFVHIDNLEFERKHQVDIINIGIAGNA-KYIMSASLDTKICLWDLK-GQ--LLQSIDTNQSSNY  232 (420)
T ss_pred             EEEEEeeecccCCCCcccccccccccchhcccceEEEeecCCc-eEEEEecCCCcEEEEecC-Cc--eeeeecccccccc
Confidence            333321110            1111223466666666665555 899999999999999997 66  5666666677778


Q ss_pred             EEEeccCCCCeEEEEcCCCcEEEEecCCCCCC--CCCCceeeeccCCCCeeEEEEecCCCcEEEEecCCCcEEEEeCCcc
Q 021657          141 CVDWNPLDDNLILTGSADNSVRMFDRRNLTSN--GVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKV  218 (309)
Q Consensus       141 ~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~--~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~dg~i~iwd~~~~  218 (309)
                      ..+.+| +|+++++++..-.+++|.+--....  .....+.++++|...|..++|+++.+. +++.+.||.++|||++- 
T Consensus       233 ~aavSP-~GRFia~~gFTpDVkVwE~~f~kdG~fqev~rvf~LkGH~saV~~~aFsn~S~r-~vtvSkDG~wriwdtdV-  309 (420)
T KOG2096|consen  233 DAAVSP-DGRFIAVSGFTPDVKVWEPIFTKDGTFQEVKRVFSLKGHQSAVLAAAFSNSSTR-AVTVSKDGKWRIWDTDV-  309 (420)
T ss_pred             ceeeCC-CCcEEEEecCCCCceEEEEEeccCcchhhhhhhheeccchhheeeeeeCCCcce-eEEEecCCcEEEeeccc-
Confidence            889999 9999999999999999987432110  003456778999999999999999998 56999999999999876 


Q ss_pred             cccccCCCCCcCCCCceeeeecCCCcceeeEEEccCCCeEEEEecCCCCCCCCCCeEEEEEccccccCChhhHhHhhh-c
Q 021657          219 GKKVEQGPRTTNYPAGLFFQHAGHRDKVVDFHWNASDPWTVVSVSDDCDSTGGGGTLQIWRMSDLIYRPQDEVLAELE-K  297 (309)
Q Consensus       219 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~s~d~~s~~~dg~v~vw~~~~~~~~~~~~~~~~~~-~  297 (309)
                      .....+.+.....-..+   +..-...-..++++|++..|+++.+         ..++++..+      .++.+.+++ .
T Consensus       310 rY~~~qDpk~Lk~g~~p---l~aag~~p~RL~lsP~g~~lA~s~g---------s~l~~~~se------~g~~~~~~e~~  371 (420)
T KOG2096|consen  310 RYEAGQDPKILKEGSAP---LHAAGSEPVRLELSPSGDSLAVSFG---------SDLKVFASE------DGKDYPELEDI  371 (420)
T ss_pred             eEecCCCchHhhcCCcc---hhhcCCCceEEEeCCCCcEEEeecC---------CceEEEEcc------cCccchhHHHh
Confidence            32222222221111111   1122233448999999997777655         469999998      455554544 6


Q ss_pred             ccceEEEeeeCC
Q 021657          298 FKAHVISCTSKP  309 (309)
Q Consensus       298 h~~~v~~~~~~P  309 (309)
                      |...|.+++|+|
T Consensus       372 h~~~Is~is~~~  383 (420)
T KOG2096|consen  372 HSTTISSISYSS  383 (420)
T ss_pred             hcCceeeEEecC
Confidence            889999999986

>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]

Probab=99.97  E-value=9.3e-31  Score=185.63  Aligned_cols=263  Identities=19%  Similarity=0.245  Sum_probs=209.8

Q ss_pred             ccCCCCCcceEEEEECC---CCCEEEEecCCCcEEEEeCCccccccccCCcccc--ccCCCCceeecCCCCCCCCcccCC
Q 021657            3 ILTGHQDNAEFALAMCP---TEPYVLSGGKDKSVVLWSIQDHITSSATDPATAK--SAGSSGSIIKQSPKPGDGNDKAAD   77 (309)
Q Consensus         3 ~l~~H~~~~V~~~~~~~---~~~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~   77 (309)
                      +..||+. +|-.++|+|   +|-+|++++.|+.--+-+=+++.-.-.+......  ...-+......+.+..+-..++|+
T Consensus         9 ~c~ghtr-pvvdl~~s~itp~g~flisa~kd~~pmlr~g~tgdwigtfeghkgavw~~~l~~na~~aasaaadftakvw~   87 (334)
T KOG0278|consen    9 TCHGHTR-PVVDLAFSPITPDGYFLISASKDGKPMLRNGDTGDWIGTFEGHKGAVWSATLNKNATRAASAAADFTAKVWD   87 (334)
T ss_pred             EEcCCCc-ceeEEeccCCCCCceEEEEeccCCCchhccCCCCCcEEeeeccCcceeeeecCchhhhhhhhcccchhhhhh
Confidence            4579999 888999986   7888999999998766665555333333332222  222233344555566778889999


Q ss_pred             CCCcCcccccccccCCeEEEEEecCCCcEEEEEcCCCeEEEEEcCCCCcceEEEeeccCCceeEEEeccCCCCeEEEEcC
Q 021657           78 GPSVGPRGIYNGHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSA  157 (309)
Q Consensus        78 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~  157 (309)
                      .-++..+..+. |..-|..++|+.|. ++|++|+.+..++|||++..+. ....+.+|.+.|..+.|.. ..+.+++++.
T Consensus        88 a~tgdelhsf~-hkhivk~~af~~ds-~~lltgg~ekllrvfdln~p~A-pp~E~~ghtg~Ir~v~wc~-eD~~iLSSad  163 (334)
T KOG0278|consen   88 AVTGDELHSFE-HKHIVKAVAFSQDS-NYLLTGGQEKLLRVFDLNRPKA-PPKEISGHTGGIRTVLWCH-EDKCILSSAD  163 (334)
T ss_pred             hhhhhhhhhhh-hhheeeeEEecccc-hhhhccchHHHhhhhhccCCCC-CchhhcCCCCcceeEEEec-cCceEEeecc
Confidence            99999888876 88899999999998 8899999999999999988775 4566789999999999999 8899999999


Q ss_pred             CCcEEEEecCCCCCCCCCCceeeeccCCCCeeEEEEecCCCcEEEEecCCCcEEEEeCCcccccccCCCCCcCCCCceee
Q 021657          158 DNSVRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFF  237 (309)
Q Consensus       158 dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~  237 (309)
                      |++||+||.++      +..++++. .+.+|+++.++++|++ + +-...+.|.+||....+..               .
T Consensus       164 d~tVRLWD~rT------gt~v~sL~-~~s~VtSlEvs~dG~i-l-Tia~gssV~Fwdaksf~~l---------------K  219 (334)
T KOG0278|consen  164 DKTVRLWDHRT------GTEVQSLE-FNSPVTSLEVSQDGRI-L-TIAYGSSVKFWDAKSFGLL---------------K  219 (334)
T ss_pred             CCceEEEEecc------CcEEEEEe-cCCCCcceeeccCCCE-E-EEecCceeEEeccccccce---------------e
Confidence            99999999999      89999998 5788999999999995 4 4555788999999984432               2


Q ss_pred             eecCCCcceeeEEEccCCCeEEEEecCCCCCCCCCCeEEEEEccccccCChhhHhHhh-hcccceEEEeeeCC
Q 021657          238 QHAGHRDKVVDFHWNASDPWTVVSVSDDCDSTGGGGTLQIWRMSDLIYRPQDEVLAEL-EKFKAHVISCTSKP  309 (309)
Q Consensus       238 ~~~~~~~~v~~~~~~~~~~~~~~s~s~d~~s~~~dg~v~vw~~~~~~~~~~~~~~~~~-~~h~~~v~~~~~~P  309 (309)
                      .+ .-...|.+..++|+...++        .|+.|+.++.||+.      +++.+..+ ++|.++|.|+.|+|
T Consensus       220 s~-k~P~nV~SASL~P~k~~fV--------aGged~~~~kfDy~------TgeEi~~~nkgh~gpVhcVrFSP  277 (334)
T KOG0278|consen  220 SY-KMPCNVESASLHPKKEFFV--------AGGEDFKVYKFDYN------TGEEIGSYNKGHFGPVHCVRFSP  277 (334)
T ss_pred             ec-cCccccccccccCCCceEE--------ecCcceEEEEEecc------CCceeeecccCCCCceEEEEECC
Confidence            22 2234688999999886555        67777999999999      67777775 89999999999998

>KOG0646 consensus WD40 repeat protein [General function prediction only]

Probab=99.97  E-value=4e-29  Score=191.62  Aligned_cols=236  Identities=14%  Similarity=0.226  Sum_probs=194.0

Q ss_pred             ceEEEEECCCCCEEEEecCCCcEEEEeCCccccccccCCccccccCCCCceeecCCCCCCCCcccCCCCCcCcccccccc
Q 021657           11 AEFALAMCPTEPYVLSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGH   90 (309)
Q Consensus        11 ~V~~~~~~~~~~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   90 (309)
                      +|.+++-+|+|.+|+.|+..|.|++|.+.                                        ++..+..+.+|
T Consensus        83 ~v~al~s~n~G~~l~ag~i~g~lYlWels----------------------------------------sG~LL~v~~aH  122 (476)
T KOG0646|consen   83 PVHALASSNLGYFLLAGTISGNLYLWELS----------------------------------------SGILLNVLSAH  122 (476)
T ss_pred             ceeeeecCCCceEEEeecccCcEEEEEec----------------------------------------cccHHHHHHhh
Confidence            79999999999999999999999999997                                        45667778899


Q ss_pred             cCCeEEEEEecCCCcEEEEEcCCCeEEEEEcCC-------CCcceEEEeeccCCceeEEEeccC-CCCeEEEEcCCCcEE
Q 021657           91 EDTVEDVTFCPSSAQEFCSVGDDSCLILWDARV-------GTSPVIKVEKAHDADLHCVDWNPL-DDNLILTGSADNSVR  162 (309)
Q Consensus        91 ~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~-------~~~~~~~~~~~~~~~v~~~~~~~~-~~~~l~~~~~dg~i~  162 (309)
                      -..|+++.|+.|| .+|+||+.||.|.+|++..       ........+..|.-+|+.+...+. ...++++++.|.+++
T Consensus       123 YQ~ITcL~fs~dg-s~iiTgskDg~V~vW~l~~lv~a~~~~~~~p~~~f~~HtlsITDl~ig~Gg~~~rl~TaS~D~t~k  201 (476)
T KOG0646|consen  123 YQSITCLKFSDDG-SHIITGSKDGAVLVWLLTDLVSADNDHSVKPLHIFSDHTLSITDLQIGSGGTNARLYTASEDRTIK  201 (476)
T ss_pred             ccceeEEEEeCCC-cEEEecCCCccEEEEEEEeecccccCCCccceeeeccCcceeEEEEecCCCccceEEEecCCceEE
Confidence            9999999999999 8899999999999998632       223367788899999999998772 246899999999999


Q ss_pred             EEecCCCCCCCCCCceeeeccCCCCeeEEEEecCCCcEEEEecCCCcEEEEeCCccccccc-CCCCCcCCCCceeeeecC
Q 021657          163 MFDRRNLTSNGVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVE-QGPRTTNYPAGLFFQHAG  241 (309)
Q Consensus       163 i~d~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~dg~i~iwd~~~~~~~~~-~~~~~~~~~~~~~~~~~~  241 (309)
                      +||+..      +..+.++. ....+.+++.+|.++.+ ..|+.+|.|.+.++........ ...+........+..+.+
T Consensus       202 ~wdlS~------g~LLlti~-fp~si~av~lDpae~~~-yiGt~~G~I~~~~~~~~~~~~~~v~~k~~~~~~t~~~~~~G  273 (476)
T KOG0646|consen  202 LWDLSL------GVLLLTIT-FPSSIKAVALDPAERVV-YIGTEEGKIFQNLLFKLSGQSAGVNQKGRHEENTQINVLVG  273 (476)
T ss_pred             EEEecc------ceeeEEEe-cCCcceeEEEcccccEE-EecCCcceEEeeehhcCCcccccccccccccccceeeeecc
Confidence            999998      88887776 57789999999999965 4999999999998876431111 111112223445667889


Q ss_pred             CCc--ceeeEEEccCCCeEEEEecCCCCCCCCCCeEEEEEccccccCChhhHhHhhhcccceEEEeeeCC
Q 021657          242 HRD--KVVDFHWNASDPWTVVSVSDDCDSTGGGGTLQIWRMSDLIYRPQDEVLAELEKFKAHVISCTSKP  309 (309)
Q Consensus       242 ~~~--~v~~~~~~~~~~~~~~s~s~d~~s~~~dg~v~vw~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~P  309 (309)
                      |..  .|++++.+-|+..|+        +|+.||.|+|||+.      +.++++++....++|+.+.+.|
T Consensus       274 h~~~~~ITcLais~DgtlLl--------SGd~dg~VcvWdi~------S~Q~iRtl~~~kgpVtnL~i~~  329 (476)
T KOG0646|consen  274 HENESAITCLAISTDGTLLL--------SGDEDGKVCVWDIY------SKQCIRTLQTSKGPVTNLQINP  329 (476)
T ss_pred             ccCCcceeEEEEecCccEEE--------eeCCCCCEEEEecc------hHHHHHHHhhhccccceeEeec
Confidence            988  999999999888766        77777999999999      8899999987788999888744

>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]

Probab=99.97  E-value=1.1e-29  Score=184.37  Aligned_cols=235  Identities=23%  Similarity=0.394  Sum_probs=179.1

Q ss_pred             CCCCCcceEEEEECC-CCCEEEEecCCCcEEEEeCCccccccccCCccccccCCCCceeecCCCCCCCCcccCCCCCcCc
Q 021657            5 TGHQDNAEFALAMCP-TEPYVLSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGP   83 (309)
Q Consensus         5 ~~H~~~~V~~~~~~~-~~~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   83 (309)
                      +.|.+ .|+++.+.+ .|+++++|+.||.|.|||+++.........                         +.+....-.
T Consensus        40 r~HgG-svNsL~id~tegrymlSGgadgsi~v~Dl~n~t~~e~s~l-------------------------i~k~~c~v~   93 (397)
T KOG4283|consen   40 RPHGG-SVNSLQIDLTEGRYMLSGGADGSIAVFDLQNATDYEASGL-------------------------IAKHKCIVA   93 (397)
T ss_pred             ccCCC-ccceeeeccccceEEeecCCCccEEEEEeccccchhhccc-------------------------eeheeeecc
Confidence            45777 899999998 689999999999999999986421100000                         000000001


Q ss_pred             ccccccccCCeEEEEEecCCCcEEEEEcCCCeEEEEEcCCCCcceEEEeeccCCceeEEEeccCCC--CeEEEEcCCCcE
Q 021657           84 RGIYNGHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDD--NLILTGSADNSV  161 (309)
Q Consensus        84 ~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~--~~l~~~~~dg~i  161 (309)
                      ...-.+|.-.|.++.|.|-+..+|.+++.|.++++||.++.+  ....+ ..++.|++-+++|-..  .++|+|..|-.|
T Consensus        94 ~~h~~~Hky~iss~~WyP~DtGmFtssSFDhtlKVWDtnTlQ--~a~~F-~me~~VYshamSp~a~sHcLiA~gtr~~~V  170 (397)
T KOG4283|consen   94 KQHENGHKYAISSAIWYPIDTGMFTSSSFDHTLKVWDTNTLQ--EAVDF-KMEGKVYSHAMSPMAMSHCLIAAGTRDVQV  170 (397)
T ss_pred             ccCCccceeeeeeeEEeeecCceeecccccceEEEeecccce--eeEEe-ecCceeehhhcChhhhcceEEEEecCCCcE
Confidence            122356889999999999877899999999999999998877  33333 4567899999988322  377888889999


Q ss_pred             EEEecCCCCCCCCCCceeeeccCCCCeeEEEEecCCCcEEEEecCCCcEEEEeCCcccccccCCCCCcCCCCceeeeecC
Q 021657          162 RMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAG  241 (309)
Q Consensus       162 ~i~d~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~  241 (309)
                      ++.|+..      +..-+.+.+|...|.++.|+|..+++|++|+.||.|++||++...................+..-..
T Consensus       171 rLCDi~S------Gs~sH~LsGHr~~vlaV~Wsp~~e~vLatgsaDg~irlWDiRrasgcf~~lD~hn~k~~p~~~~n~a  244 (397)
T KOG4283|consen  171 RLCDIAS------GSFSHTLSGHRDGVLAVEWSPSSEWVLATGSADGAIRLWDIRRASGCFRVLDQHNTKRPPILKTNTA  244 (397)
T ss_pred             EEEeccC------CcceeeeccccCceEEEEeccCceeEEEecCCCceEEEEEeecccceeEEeecccCccCcccccccc
Confidence            9999999      9999999999999999999999999999999999999999998532222111111122223345678


Q ss_pred             CCcceeeEEEccCCCeEEEEecCCCCCCCCCCeEEEEEccc
Q 021657          242 HRDKVVDFHWNASDPWTVVSVSDDCDSTGGGGTLQIWRMSD  282 (309)
Q Consensus       242 ~~~~v~~~~~~~~~~~~~~s~s~d~~s~~~dg~v~vw~~~~  282 (309)
                      |.+.|+.++|+.++.+++        ++|.|..+++|+..+
T Consensus       245 h~gkvngla~tSd~~~l~--------~~gtd~r~r~wn~~~  277 (397)
T KOG4283|consen  245 HYGKVNGLAWTSDARYLA--------SCGTDDRIRVWNMES  277 (397)
T ss_pred             ccceeeeeeecccchhhh--------hccCccceEEeeccc
Confidence            999999999999999887        777889999999885

>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]

Probab=99.97  E-value=7.2e-31  Score=198.27  Aligned_cols=263  Identities=17%  Similarity=0.219  Sum_probs=202.8

Q ss_pred             cccCCCCCcceEEEEECCCCCEEEEecCCCcEEEEeCCccccccc----cCCccccccCCCCceeecCCCCCCCCcccCC
Q 021657            2 EILTGHQDNAEFALAMCPTEPYVLSGGKDKSVVLWSIQDHITSSA----TDPATAKSAGSSGSIIKQSPKPGDGNDKAAD   77 (309)
Q Consensus         2 ~~l~~H~~~~V~~~~~~~~~~~l~t~~~dg~i~vwd~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   77 (309)
                      ..|..|.+ .|..+.|-++...|+||+.|..|++|++........    .......................+...++|+
T Consensus       169 ~~ld~h~g-ev~~v~~l~~sdtlatgg~Dr~Ik~W~v~~~k~~~~~tLaGs~g~it~~d~d~~~~~~iAas~d~~~r~Wn  247 (459)
T KOG0288|consen  169 FVLDAHEG-EVHDVEFLRNSDTLATGGSDRIIKLWNVLGEKSELISTLAGSLGNITSIDFDSDNKHVIAASNDKNLRLWN  247 (459)
T ss_pred             hhhhcccc-ccceeEEccCcchhhhcchhhhhhhhhcccchhhhhhhhhccCCCcceeeecCCCceEEeecCCCceeeee
Confidence            35778999 899999999989999999999999999876642211    1111122223333344455567788999999


Q ss_pred             CCCcCcccccccccCCeEEEEEecCCCcEEEEEcCCCeEEEEEcCCCCcceEEEeeccCCceeEEEeccCCCCeEEEEcC
Q 021657           78 GPSVGPRGIYNGHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSA  157 (309)
Q Consensus        78 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~  157 (309)
                      ....+...++.+|++.|+++.|.... ..+++|+.|.+|++||+....  +..... ..+.+..+...   ...+++|..
T Consensus       248 vd~~r~~~TLsGHtdkVt~ak~~~~~-~~vVsgs~DRtiK~WDl~k~~--C~kt~l-~~S~cnDI~~~---~~~~~SgH~  320 (459)
T KOG0288|consen  248 VDSLRLRHTLSGHTDKVTAAKFKLSH-SRVVSGSADRTIKLWDLQKAY--CSKTVL-PGSQCNDIVCS---ISDVISGHF  320 (459)
T ss_pred             ccchhhhhhhcccccceeeehhhccc-cceeeccccchhhhhhhhhhh--eecccc-ccccccceEec---ceeeeeccc
Confidence            99999999999999999999998876 459999999999999998866  444332 23445566653   578899999


Q ss_pred             CCcEEEEecCCCCCCCCCCceeeeccCCCCeeEEEEecCCCcEEEEecCCCcEEEEeCCcccccccCCCCCcCCCCceee
Q 021657          158 DNSVRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFF  237 (309)
Q Consensus       158 dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~  237 (309)
                      |++||+||++.      ..+......+. .|+++..++++..++ +++.|.++.+.|++...-               ..
T Consensus       321 DkkvRfwD~Rs------~~~~~sv~~gg-~vtSl~ls~~g~~lL-sssRDdtl~viDlRt~eI---------------~~  377 (459)
T KOG0288|consen  321 DKKVRFWDIRS------ADKTRSVPLGG-RVTSLDLSMDGLELL-SSSRDDTLKVIDLRTKEI---------------RQ  377 (459)
T ss_pred             ccceEEEeccC------CceeeEeecCc-ceeeEeeccCCeEEe-eecCCCceeeeecccccE---------------EE
Confidence            99999999999      77888887654 899999999999876 779999999999998322               22


Q ss_pred             eecC----CCcceeeEEEccCCCeEEEEecCCCCCCCCCCeEEEEEccccccCChhhHhHhhhcccc--eEEEeeeCC
Q 021657          238 QHAG----HRDKVVDFHWNASDPWTVVSVSDDCDSTGGGGTLQIWRMSDLIYRPQDEVLAELEKFKA--HVISCTSKP  309 (309)
Q Consensus       238 ~~~~----~~~~v~~~~~~~~~~~~~~s~s~d~~s~~~dg~v~vw~~~~~~~~~~~~~~~~~~~h~~--~v~~~~~~P  309 (309)
                      .+.+    .....+.+.|||++.|++        +|+.||.|+||++.      ++++...+.....  .|++++|.|
T Consensus       378 ~~sA~g~k~asDwtrvvfSpd~~Yva--------AGS~dgsv~iW~v~------tgKlE~~l~~s~s~~aI~s~~W~~  441 (459)
T KOG0288|consen  378 TFSAEGFKCASDWTRVVFSPDGSYVA--------AGSADGSVYIWSVF------TGKLEKVLSLSTSNAAITSLSWNP  441 (459)
T ss_pred             EeeccccccccccceeEECCCCceee--------eccCCCcEEEEEcc------CceEEEEeccCCCCcceEEEEEcC
Confidence            2111    122489999999888766        77777999999999      7887777765444  599999987

>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]

Probab=99.97  E-value=6.2e-30  Score=214.49  Aligned_cols=250  Identities=23%  Similarity=0.413  Sum_probs=197.6

Q ss_pred             cCCCCCcceEEEEECCCCCEEEEec--CCCcEEEEeCCccccccccCCccccccCCCCceeecCCCCCCCCcccCCCCCc
Q 021657            4 LTGHQDNAEFALAMCPTEPYVLSGG--KDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSV   81 (309)
Q Consensus         4 l~~H~~~~V~~~~~~~~~~~l~t~~--~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (309)
                      +-+|.+..|.+++.+|+|..++||+  .||.++||+.+.-...                            ...++..-.
T Consensus         8 wv~H~~~~IfSIdv~pdg~~~aTgGq~~d~~~~iW~~~~vl~~----------------------------~~~~~~~l~   59 (942)
T KOG0973|consen    8 WVNHNEKSIFSIDVHPDGVKFATGGQVLDGGIVIWSQDPVLDE----------------------------KEEKNENLP   59 (942)
T ss_pred             ccccCCeeEEEEEecCCceeEecCCccccccceeeccccccch----------------------------hhhhhcccc
Confidence            4567777899999999999999999  9999999998632100                            011111123


Q ss_pred             CcccccccccCCeEEEEEecCCCcEEEEEcCCCeEEEEEcCC----------C------CcceEEEeeccCCceeEEEec
Q 021657           82 GPRGIYNGHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARV----------G------TSPVIKVEKAHDADLHCVDWN  145 (309)
Q Consensus        82 ~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~----------~------~~~~~~~~~~~~~~v~~~~~~  145 (309)
                      +.+..+..|.+.|+|+.|+|+| .+||+|++|+.|.||+...          +      .......+.+|...|..++|+
T Consensus        60 k~l~~m~~h~~sv~CVR~S~dG-~~lAsGSDD~~v~iW~~~~~~~~~~fgs~g~~~~vE~wk~~~~l~~H~~DV~Dv~Ws  138 (942)
T KOG0973|consen   60 KHLCTMDDHDGSVNCVRFSPDG-SYLASGSDDRLVMIWERAEIGSGTVFGSTGGAKNVESWKVVSILRGHDSDVLDVNWS  138 (942)
T ss_pred             hhheeeccccCceeEEEECCCC-CeEeeccCcceEEEeeecccCCcccccccccccccceeeEEEEEecCCCccceeccC
Confidence            4566778899999999999999 8999999999999999872          0      123567788999999999999


Q ss_pred             cCCCCeEEEEcCCCcEEEEecCCCCCCCCCCceeeeccCCCCeeEEEEecCCCcEEEEecCCCcEEEEeCCcccccccCC
Q 021657          146 PLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQG  225 (309)
Q Consensus       146 ~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~dg~i~iwd~~~~~~~~~~~  225 (309)
                      | ++.+|++++.|++|.+|+.++      .+.+..+.+|.+.|-.+.|.|-|+| ||+-+.|++|+||++..++-.... 
T Consensus       139 p-~~~~lvS~s~DnsViiwn~~t------F~~~~vl~~H~s~VKGvs~DP~Gky-~ASqsdDrtikvwrt~dw~i~k~I-  209 (942)
T KOG0973|consen  139 P-DDSLLVSVSLDNSVIIWNAKT------FELLKVLRGHQSLVKGVSWDPIGKY-FASQSDDRTLKVWRTSDWGIEKSI-  209 (942)
T ss_pred             C-CccEEEEecccceEEEEcccc------ceeeeeeecccccccceEECCccCe-eeeecCCceEEEEEcccceeeEee-
Confidence            9 999999999999999999999      8899999999999999999999997 789999999999998774332111 


Q ss_pred             CCCcCCCCceeeeecCCCcceeeEEEccCCCeEEEEecCCCCCCCCCCeEEEEEccccccCChhhHhHhhhcccceEEEe
Q 021657          226 PRTTNYPAGLFFQHAGHRDKVVDFHWNASDPWTVVSVSDDCDSTGGGGTLQIWRMSDLIYRPQDEVLAELEKFKAHVISC  305 (309)
Q Consensus       226 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~s~d~~s~~~dg~v~vw~~~~~~~~~~~~~~~~~~~h~~~v~~~  305 (309)
                              ..-+....-......+.|+|+|.+|++..+.+    +.-.++.|.+-.      +-+.-..|-||.+++.++
T Consensus       210 --------t~pf~~~~~~T~f~RlSWSPDG~~las~nA~n----~~~~~~~IieR~------tWk~~~~LvGH~~p~evv  271 (942)
T KOG0973|consen  210 --------TKPFEESPLTTFFLRLSWSPDGHHLASPNAVN----GGKSTIAIIERG------TWKVDKDLVGHSAPVEVV  271 (942)
T ss_pred             --------ccchhhCCCcceeeecccCCCcCeecchhhcc----CCcceeEEEecC------CceeeeeeecCCCceEEE
Confidence                    00111112234678999999999887665543    333567777766      555667788999999999


Q ss_pred             eeCC
Q 021657          306 TSKP  309 (309)
Q Consensus       306 ~~~P  309 (309)
                      .|+|
T Consensus       272 rFnP  275 (942)
T KOG0973|consen  272 RFNP  275 (942)
T ss_pred             EeCh
Confidence            9998

>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=99.97  E-value=1.5e-29  Score=204.51  Aligned_cols=218  Identities=23%  Similarity=0.384  Sum_probs=182.7

Q ss_pred             cccCCCCCcceEEEEECCCCCEEEEecCCCcEEEEeCCccccccccCCccccccCCCCceeecCCCCCCCCcccCCCCCc
Q 021657            2 EILTGHQDNAEFALAMCPTEPYVLSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSV   81 (309)
Q Consensus         2 ~~l~~H~~~~V~~~~~~~~~~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (309)
                      .+.++|.+ +|++++.+||+..++|||.|.+|++||..-........                     .   ++.   ..
T Consensus       448 Eti~AHdg-aIWsi~~~pD~~g~vT~saDktVkfWdf~l~~~~~gt~---------------------~---k~l---sl  499 (888)
T KOG0306|consen  448 ETIRAHDG-AIWSISLSPDNKGFVTGSADKTVKFWDFKLVVSVPGTQ---------------------K---KVL---SL  499 (888)
T ss_pred             hhhhcccc-ceeeeeecCCCCceEEecCCcEEEEEeEEEEeccCccc---------------------c---eee---ee
Confidence            46789999 99999999999999999999999999986321100000                     0   000   00


Q ss_pred             CcccccccccCCeEEEEEecCCCcEEEEEcCCCeEEEEEcCCCCcceEEEeeccCCceeEEEeccCCCCeEEEEcCCCcE
Q 021657           82 GPRGIYNGHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSV  161 (309)
Q Consensus        82 ~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i  161 (309)
                      ....++ .-...|.|+.++||+ .+|+.+--|.+++||-+.+-+  ....+.+|.-||.||..+| +++.+++|+.|.+|
T Consensus       500 ~~~rtL-el~ddvL~v~~Spdg-k~LaVsLLdnTVkVyflDtlK--FflsLYGHkLPV~smDIS~-DSklivTgSADKnV  574 (888)
T KOG0306|consen  500 KHTRTL-ELEDDVLCVSVSPDG-KLLAVSLLDNTVKVYFLDTLK--FFLSLYGHKLPVLSMDISP-DSKLIVTGSADKNV  574 (888)
T ss_pred             ccceEE-eccccEEEEEEcCCC-cEEEEEeccCeEEEEEeccee--eeeeecccccceeEEeccC-CcCeEEeccCCCce
Confidence            011111 235679999999999 899999999999999999888  7888999999999999999 99999999999999


Q ss_pred             EEEecCCCCCCCCCCceeeeccCCCCeeEEEEecCCCcEEEEecCCCcEEEEeCCcccccccCCCCCcCCCCceeeeecC
Q 021657          162 RMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAG  241 (309)
Q Consensus       162 ~i~d~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~  241 (309)
                      ++|-+.-      |.+-..+.+|...|.++.|.|... +|.+++.|+.|+-||-.+               ...+..+.+
T Consensus       575 KiWGLdF------GDCHKS~fAHdDSvm~V~F~P~~~-~FFt~gKD~kvKqWDg~k---------------Fe~iq~L~~  632 (888)
T KOG0306|consen  575 KIWGLDF------GDCHKSFFAHDDSVMSVQFLPKTH-LFFTCGKDGKVKQWDGEK---------------FEEIQKLDG  632 (888)
T ss_pred             EEecccc------chhhhhhhcccCceeEEEEcccce-eEEEecCcceEEeechhh---------------hhhheeecc
Confidence            9999998      899999999999999999999766 566999999999999887               556788999


Q ss_pred             CCcceeeEEEccCCCeEEEEecCCCCCCCCCCeEEEEEccc
Q 021657          242 HRDKVVDFHWNASDPWTVVSVSDDCDSTGGGGTLQIWRMSD  282 (309)
Q Consensus       242 ~~~~v~~~~~~~~~~~~~~s~s~d~~s~~~dg~v~vw~~~~  282 (309)
                      |...|++++.+|+|.+++        |++.|.+|++|...+
T Consensus       633 H~~ev~cLav~~~G~~vv--------s~shD~sIRlwE~td  665 (888)
T KOG0306|consen  633 HHSEVWCLAVSPNGSFVV--------SSSHDKSIRLWERTD  665 (888)
T ss_pred             chheeeeeEEcCCCCeEE--------eccCCceeEeeeccC
Confidence            999999999999998766        666669999999775

>KOG0300 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.97  E-value=4.7e-30  Score=188.36  Aligned_cols=218  Identities=23%  Similarity=0.437  Sum_probs=184.8

Q ss_pred             CcccCCCCCcceEEEEECCCCCEEEEecCCCcEEEEeCCccccccccCCccccccCCCCceeecCCCCCCCCcccCCCCC
Q 021657            1 MEILTGHQDNAEFALAMCPTEPYVLSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPS   80 (309)
Q Consensus         1 l~~l~~H~~~~V~~~~~~~~~~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (309)
                      ++.|.||++ .|+.++.....+.+.+++.|.+.+||.++                                        +
T Consensus       141 vre~~GHkD-GiW~Vaa~~tqpi~gtASADhTA~iWs~E----------------------------------------s  179 (481)
T KOG0300|consen  141 VRELEGHKD-GIWHVAADSTQPICGTASADHTARIWSLE----------------------------------------S  179 (481)
T ss_pred             hhhhccccc-ceeeehhhcCCcceeecccccceeEEeec----------------------------------------c
Confidence            367899999 79999998888899999999999999998                                        4


Q ss_pred             cCcccccccccCCeEEEEEecCCCcEEEEEcCCCeEEEEEc------CCC--------------------------C---
Q 021657           81 VGPRGIYNGHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDA------RVG--------------------------T---  125 (309)
Q Consensus        81 ~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~------~~~--------------------------~---  125 (309)
                      +.++..+.+|.+.|++++|++.+ .++++++.|++..||..      .+.                          +   
T Consensus       180 g~CL~~Y~GH~GSVNsikfh~s~-~L~lTaSGD~taHIW~~av~~~vP~~~a~~~hSsEeE~e~sDe~~~d~d~~~~sD~  258 (481)
T KOG0300|consen  180 GACLATYTGHTGSVNSIKFHNSG-LLLLTASGDETAHIWKAAVNWEVPSNNAPSDHSSEEEEEHSDEHNRDTDSSEKSDG  258 (481)
T ss_pred             ccceeeecccccceeeEEecccc-ceEEEccCCcchHHHHHhhcCcCCCCCCCCCCCchhhhhcccccccccccccccCC
Confidence            56677788999999999999998 89999999999999962      110                          0   


Q ss_pred             ---cceEEEeeccCCceeEEEeccCCCCeEEEEcCCCcEEEEecCCCCCCCCCCceeeeccCCCCeeEEEEecCCCcEEE
Q 021657          126 ---SPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWSPDKSSVFG  202 (309)
Q Consensus       126 ---~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~  202 (309)
                         ..+...+.+|...|.+..|.. .++.+++++.|.+..+||+++      +.++..+.+|....+.++-+|..+ |++
T Consensus       259 ~tiRvPl~~ltgH~~vV~a~dWL~-gg~Q~vTaSWDRTAnlwDVEt------ge~v~~LtGHd~ELtHcstHptQr-LVv  330 (481)
T KOG0300|consen  259 HTIRVPLMRLTGHRAVVSACDWLA-GGQQMVTASWDRTANLWDVET------GEVVNILTGHDSELTHCSTHPTQR-LVV  330 (481)
T ss_pred             ceeeeeeeeeeccccceEehhhhc-Ccceeeeeeccccceeeeecc------CceeccccCcchhccccccCCcce-EEE
Confidence               024456789999999999999 999999999999999999999      999999999999999999999988 677


Q ss_pred             EecCCCcEEEEeCCcccccccCCCCCcCCCCceeeeecCCCcceeeEEEccCCCeEEEEecCCCCCCCCCCeEEEEEccc
Q 021657          203 SSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKVVDFHWNASDPWTVVSVSDDCDSTGGGGTLQIWRMSD  282 (309)
Q Consensus       203 ~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~s~d~~s~~~dg~v~vw~~~~  282 (309)
                      +.+.|.+.++||++..              .+.+..+++|...|+++.|..++.  ++++|       .|.+|++||+++
T Consensus       331 TsSrDtTFRLWDFRea--------------I~sV~VFQGHtdtVTS~vF~~dd~--vVSgS-------DDrTvKvWdLrN  387 (481)
T KOG0300|consen  331 TSSRDTTFRLWDFREA--------------IQSVAVFQGHTDTVTSVVFNTDDR--VVSGS-------DDRTVKVWDLRN  387 (481)
T ss_pred             EeccCceeEeccchhh--------------cceeeeecccccceeEEEEecCCc--eeecC-------CCceEEEeeecc
Confidence            9999999999999862              345678899999999999998654  55455       459999999997


Q ss_pred             cccCChhhHhHhhh
Q 021657          283 LIYRPQDEVLAELE  296 (309)
Q Consensus       283 ~~~~~~~~~~~~~~  296 (309)
                      +     ..++.++.
T Consensus       388 M-----RsplATIR  396 (481)
T KOG0300|consen  388 M-----RSPLATIR  396 (481)
T ss_pred             c-----cCcceeee
Confidence            3     44455443

>KOG0289 consensus mRNA splicing factor [General function prediction only]

Probab=99.97  E-value=5.2e-29  Score=189.49  Aligned_cols=230  Identities=18%  Similarity=0.356  Sum_probs=182.4

Q ss_pred             CcccCCCCCcceEEEEECCCCCEEEEecCCCcEEEEeCCccccccccCCccccccCCCCceeecCCCCCCCCcccCCCCC
Q 021657            1 MEILTGHQDNAEFALAMCPTEPYVLSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPS   80 (309)
Q Consensus         1 l~~l~~H~~~~V~~~~~~~~~~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (309)
                      |++|+||.. .|+.+.|+|+...+++++.|-.|+||.....                                       
T Consensus       254 l~~~~Gh~k-ki~~v~~~~~~~~v~~aSad~~i~vws~~~~---------------------------------------  293 (506)
T KOG0289|consen  254 LATLKGHTK-KITSVKFHKDLDTVITASADEIIRVWSVPLS---------------------------------------  293 (506)
T ss_pred             hhhccCcce-EEEEEEeccchhheeecCCcceEEeeccccc---------------------------------------
Confidence            468999999 8999999999999999999999999998632                                       


Q ss_pred             cCcccccccccCCeEEEEEecCCCcEEEEEcCCCeEEEEEcCCCCcceEEEeeccCCceeEEEeccCCCCeEEEEcCCCc
Q 021657           81 VGPRGIYNGHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNS  160 (309)
Q Consensus        81 ~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~  160 (309)
                       ........|..+|+.+..+|.| .+|+++++||+....|++++.......-....-.+++.+|+| +|.+|.+|..||.
T Consensus       294 -s~~~~~~~h~~~V~~ls~h~tg-eYllsAs~d~~w~Fsd~~~g~~lt~vs~~~s~v~~ts~~fHp-DgLifgtgt~d~~  370 (506)
T KOG0289|consen  294 -SEPTSSRPHEEPVTGLSLHPTG-EYLLSASNDGTWAFSDISSGSQLTVVSDETSDVEYTSAAFHP-DGLIFGTGTPDGV  370 (506)
T ss_pred             -cCccccccccccceeeeeccCC-cEEEEecCCceEEEEEccCCcEEEEEeeccccceeEEeeEcC-CceEEeccCCCce
Confidence             1234566799999999999999 889999999999999999998432222222345699999999 9999999999999


Q ss_pred             EEEEecCCCCCCCCCCceeeeccCCCCeeEEEEecCCCcEEEEecCCCcEEEEeCCcccccccCCCCCcCCCCceeeeec
Q 021657          161 VRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHA  240 (309)
Q Consensus       161 i~i~d~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~  240 (309)
                      ++|||+..      ...+..|.+|.++|..|+|+.+|-+ +|++++|+.|++||+|+...               +.++.
T Consensus       371 vkiwdlks------~~~~a~Fpght~~vk~i~FsENGY~-Lat~add~~V~lwDLRKl~n---------------~kt~~  428 (506)
T KOG0289|consen  371 VKIWDLKS------QTNVAKFPGHTGPVKAISFSENGYW-LATAADDGSVKLWDLRKLKN---------------FKTIQ  428 (506)
T ss_pred             EEEEEcCC------ccccccCCCCCCceeEEEeccCceE-EEEEecCCeEEEEEehhhcc---------------cceee
Confidence            99999999      7789999999999999999999997 57999999999999998331               11111


Q ss_pred             -CCCcceeeEEEccCCCeEEEEecCCCCCCCCCCeEEEEEccccccCChhhHhHhhhcccceEEEeee
Q 021657          241 -GHRDKVVDFHWNASDPWTVVSVSDDCDSTGGGGTLQIWRMSDLIYRPQDEVLAELEKFKAHVISCTS  307 (309)
Q Consensus       241 -~~~~~v~~~~~~~~~~~~~~s~s~d~~s~~~dg~v~vw~~~~~~~~~~~~~~~~~~~h~~~v~~~~~  307 (309)
                       .....+.++.|.+.|.+|.+.        |.|=.|++++-..    .+-.++.++.-|.+..+++.|
T Consensus       429 l~~~~~v~s~~fD~SGt~L~~~--------g~~l~Vy~~~k~~----k~W~~~~~~~~~sg~st~v~F  484 (506)
T KOG0289|consen  429 LDEKKEVNSLSFDQSGTYLGIA--------GSDLQVYICKKKT----KSWTEIKELADHSGLSTGVRF  484 (506)
T ss_pred             ccccccceeEEEcCCCCeEEee--------cceeEEEEEeccc----ccceeeehhhhcccccceeee
Confidence             123379999999999987744        3333444444221    134566777777777777665

>PLN00181 protein SPA1-RELATED; Provisional

Probab=99.97  E-value=1.7e-28  Score=216.64  Aligned_cols=223  Identities=17%  Similarity=0.231  Sum_probs=167.8

Q ss_pred             cccCCCCCcceEEEEECC-CCCEEEEecCCCcEEEEeCCccccccccCCccccccCCCCceeecCCCCCCCCcccCCCCC
Q 021657            2 EILTGHQDNAEFALAMCP-TEPYVLSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPS   80 (309)
Q Consensus         2 ~~l~~H~~~~V~~~~~~~-~~~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (309)
                      +.+.+|.+ .|++++|+| ++.+|+||+.||+|++||+.++                                       
T Consensus       569 ~~~~~H~~-~V~~l~~~p~~~~~L~Sgs~Dg~v~iWd~~~~---------------------------------------  608 (793)
T PLN00181        569 TEMKEHEK-RVWSIDYSSADPTLLASGSDDGSVKLWSINQG---------------------------------------  608 (793)
T ss_pred             EEecCCCC-CEEEEEEcCCCCCEEEEEcCCCEEEEEECCCC---------------------------------------
Confidence            46789998 899999997 7899999999999999999743                                       


Q ss_pred             cCcccccccccCCeEEEEEecCCCcEEEEEcCCCeEEEEEcCCCCcceEEEeeccCCceeEEEeccCCCCeEEEEcCCCc
Q 021657           81 VGPRGIYNGHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNS  160 (309)
Q Consensus        81 ~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~  160 (309)
                       ..+..+.. ...|.++.|++..+.+|++|+.||.|++||++..+. ....+.+|...|.+++|.  ++.+|++++.|++
T Consensus       609 -~~~~~~~~-~~~v~~v~~~~~~g~~latgs~dg~I~iwD~~~~~~-~~~~~~~h~~~V~~v~f~--~~~~lvs~s~D~~  683 (793)
T PLN00181        609 -VSIGTIKT-KANICCVQFPSESGRSLAFGSADHKVYYYDLRNPKL-PLCTMIGHSKTVSYVRFV--DSSTLVSSSTDNT  683 (793)
T ss_pred             -cEEEEEec-CCCeEEEEEeCCCCCEEEEEeCCCeEEEEECCCCCc-cceEecCCCCCEEEEEEe--CCCEEEEEECCCE
Confidence             12233333 357899999765448999999999999999987653 345667899999999996  4788999999999


Q ss_pred             EEEEecCCCCCCCCCCceeeeccCCCCeeEEEEecCCCcEEEEecCCCcEEEEeCCcccccccCCCCCcCCCCceeeeec
Q 021657          161 VRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHA  240 (309)
Q Consensus       161 i~i~d~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~  240 (309)
                      |++||++.........++..+.+|...+..++|+|++.+ +++|+.|+.|++|+............... . ...-....
T Consensus       684 ikiWd~~~~~~~~~~~~l~~~~gh~~~i~~v~~s~~~~~-lasgs~D~~v~iw~~~~~~~~~s~~~~~~-~-~~~~~~~~  760 (793)
T PLN00181        684 LKLWDLSMSISGINETPLHSFMGHTNVKNFVGLSVSDGY-IATGSETNEVFVYHKAFPMPVLSYKFKTI-D-PVSGLEVD  760 (793)
T ss_pred             EEEEeCCCCccccCCcceEEEcCCCCCeeEEEEcCCCCE-EEEEeCCCEEEEEECCCCCceEEEecccC-C-cccccccC
Confidence            999999853211114678889999999999999999985 68999999999999865321110000000 0 00001224


Q ss_pred             CCCcceeeEEEccCCCeEEEEecCCCCCCCCCCeEEEEEc
Q 021657          241 GHRDKVVDFHWNASDPWTVVSVSDDCDSTGGGGTLQIWRM  280 (309)
Q Consensus       241 ~~~~~v~~~~~~~~~~~~~~s~s~d~~s~~~dg~v~vw~~  280 (309)
                      .|...|.+++|+|++..++        +|+.||.|+||++
T Consensus       761 ~~~~~V~~v~ws~~~~~lv--------a~~~dG~I~i~~~  792 (793)
T PLN00181        761 DASQFISSVCWRGQSSTLV--------AANSTGNIKILEM  792 (793)
T ss_pred             CCCcEEEEEEEcCCCCeEE--------EecCCCcEEEEec
Confidence            5667899999999888766        5555699999996

>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]

Probab=99.97  E-value=6.2e-29  Score=190.29  Aligned_cols=237  Identities=18%  Similarity=0.347  Sum_probs=184.5

Q ss_pred             CCCCCcceEEEEECCCCCEEEEecCCCcEEEEeCCccccccccCCccccccCCCCceeecCCCCCCCCcccCCCCCcCcc
Q 021657            5 TGHQDNAEFALAMCPTEPYVLSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPR   84 (309)
Q Consensus         5 ~~H~~~~V~~~~~~~~~~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   84 (309)
                      ++|.+ .|.+++.++||+||++|+.|..|.||+.+                                        +.+++
T Consensus       199 ~~h~k-eil~~avS~Dgkylatgg~d~~v~Iw~~~----------------------------------------t~ehv  237 (479)
T KOG0299|consen  199 KGHVK-EILTLAVSSDGKYLATGGRDRHVQIWDCD----------------------------------------TLEHV  237 (479)
T ss_pred             ccccc-eeEEEEEcCCCcEEEecCCCceEEEecCc----------------------------------------ccchh
Confidence            37888 89999999999999999999999999997                                        55667


Q ss_pred             cccccccCCeEEEEEecCCCcEEEEEcCCCeEEEEEcCCCCcceEEEeeccCCceeEEEeccCCCCeEEEEcCCCcEEEE
Q 021657           85 GIYNGHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMF  164 (309)
Q Consensus        85 ~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~  164 (309)
                      +.+.+|.+.|.+++|-..- ..+++++.|+.|++|++....  .+.++.+|++.|.++.... -++.+-+|+.|+++++|
T Consensus       238 ~~~~ghr~~V~~L~fr~gt-~~lys~s~Drsvkvw~~~~~s--~vetlyGHqd~v~~IdaL~-reR~vtVGgrDrT~rlw  313 (479)
T KOG0299|consen  238 KVFKGHRGAVSSLAFRKGT-SELYSASADRSVKVWSIDQLS--YVETLYGHQDGVLGIDALS-RERCVTVGGRDRTVRLW  313 (479)
T ss_pred             hcccccccceeeeeeecCc-cceeeeecCCceEEEehhHhH--HHHHHhCCccceeeechhc-ccceEEeccccceeEEE
Confidence            7889999999999997644 779999999999999998877  7888999999999999887 77888888899999999


Q ss_pred             ecCCCCCCCCCCceeeeccCCCCeeEEEEecCCCcEEEEecCCCcEEEEeCCcccccccCCCCCcCCCCceeeeecCCCc
Q 021657          165 DRRNLTSNGVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRD  244 (309)
Q Consensus       165 d~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  244 (309)
                      ++..       .....+.++.+.+.|++|-.+..  |++|+.||.|.+|++.+.+............+   ......+..
T Consensus       314 Ki~e-------esqlifrg~~~sidcv~~In~~H--fvsGSdnG~IaLWs~~KKkplf~~~~AHgv~~---~~~~~~~~~  381 (479)
T KOG0299|consen  314 KIPE-------ESQLIFRGGEGSIDCVAFINDEH--FVSGSDNGSIALWSLLKKKPLFTSRLAHGVIP---ELDPVNGNF  381 (479)
T ss_pred             eccc-------cceeeeeCCCCCeeeEEEecccc--eeeccCCceEEEeeecccCceeEeeccccccC---Ccccccccc
Confidence            9954       44456777888999999988776  56999999999999988433322111110000   001112335


Q ss_pred             ceeeEEEccCCCeEEEEecCCCCCCCCCCeEEEEEccccccCChhhHhHhhhcccceEEEeeeCC
Q 021657          245 KVVDFHWNASDPWTVVSVSDDCDSTGGGGTLQIWRMSDLIYRPQDEVLAELEKFKAHVISCTSKP  309 (309)
Q Consensus       245 ~v~~~~~~~~~~~~~~s~s~d~~s~~~dg~v~vw~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~P  309 (309)
                      +|++++..|..+ |++       +|+.+|.|++|.+.+...  ...++..+. ..+.|.+++|++
T Consensus       382 Witsla~i~~sd-L~a-------sGS~~G~vrLW~i~~g~r--~i~~l~~ls-~~GfVNsl~f~~  435 (479)
T KOG0299|consen  382 WITSLAVIPGSD-LLA-------SGSWSGCVRLWKIEDGLR--AINLLYSLS-LVGFVNSLAFSN  435 (479)
T ss_pred             ceeeeEecccCc-eEE-------ecCCCCceEEEEecCCcc--ccceeeecc-cccEEEEEEEcc
Confidence            899999999554 666       555669999999985321  245556665 668899998864

>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]

Probab=99.97  E-value=1.6e-28  Score=179.09  Aligned_cols=259  Identities=16%  Similarity=0.245  Sum_probs=193.2

Q ss_pred             ceEEEEECCCCCEEEEecCCCcEEEEeCCccccccccCCccccccCCCCceeecCCCCCCCCcccCCCCCcCcccccccc
Q 021657           11 AEFALAMCPTEPYVLSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGH   90 (309)
Q Consensus        11 ~V~~~~~~~~~~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   90 (309)
                      .|.++.|+|.+..|+.++.||++++||+........+........-.-........+..++.++.+|..+.... .+..|
T Consensus        15 ~IS~v~f~~~~~~LLvssWDgslrlYdv~~~~l~~~~~~~~plL~c~F~d~~~~~~G~~dg~vr~~Dln~~~~~-~igth   93 (323)
T KOG1036|consen   15 GISSVKFSPSSSDLLVSSWDGSLRLYDVPANSLKLKFKHGAPLLDCAFADESTIVTGGLDGQVRRYDLNTGNED-QIGTH   93 (323)
T ss_pred             ceeeEEEcCcCCcEEEEeccCcEEEEeccchhhhhheecCCceeeeeccCCceEEEeccCceEEEEEecCCcce-eeccC
Confidence            79999999999999999999999999998764433333222221111111233445667888899888877654 45679


Q ss_pred             cCCeEEEEEecCCCcEEEEEcCCCeEEEEEcCCCCcceEEEeeccCCceeEEEeccCCCCeEEEEcCCCcEEEEecCCCC
Q 021657           91 EDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLT  170 (309)
Q Consensus        91 ~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~  170 (309)
                      ..+|.||.+++.. ..+++|+.|++|++||.+...  ....+. ....|.++..   .++.|++|+.+..+.+||+|++.
T Consensus        94 ~~~i~ci~~~~~~-~~vIsgsWD~~ik~wD~R~~~--~~~~~d-~~kkVy~~~v---~g~~LvVg~~~r~v~iyDLRn~~  166 (323)
T KOG1036|consen   94 DEGIRCIEYSYEV-GCVISGSWDKTIKFWDPRNKV--VVGTFD-QGKKVYCMDV---SGNRLVVGTSDRKVLIYDLRNLD  166 (323)
T ss_pred             CCceEEEEeeccC-CeEEEcccCccEEEEeccccc--cccccc-cCceEEEEec---cCCEEEEeecCceEEEEEccccc
Confidence            9999999999866 789999999999999998643  233332 3447888877   67899999999999999999953


Q ss_pred             CCCCCCceee-eccCCCCeeEEEEecCCCcEEEEecCCCcEEEEeCCcccccccCCCCCcCCCCceeeeecCCC------
Q 021657          171 SNGVGSPINK-FEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHR------  243 (309)
Q Consensus       171 ~~~~~~~~~~-~~~~~~~v~~~~~~~~~~~l~~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------  243 (309)
                           .+.+. -...+-.++++++-|++.- +++++-||.|.+=.++...+.           ....+.++.|.      
T Consensus       167 -----~~~q~reS~lkyqtR~v~~~pn~eG-y~~sSieGRVavE~~d~s~~~-----------~skkyaFkCHr~~~~~~  229 (323)
T KOG1036|consen  167 -----EPFQRRESSLKYQTRCVALVPNGEG-YVVSSIEGRVAVEYFDDSEEA-----------QSKKYAFKCHRLSEKDT  229 (323)
T ss_pred             -----chhhhccccceeEEEEEEEecCCCc-eEEEeecceEEEEccCCchHH-----------hhhceeEEeeecccCCc
Confidence                 22211 1234567899999998876 679999999998777663111           12345556664      


Q ss_pred             ---cceeeEEEccCCCeEEEEecCCCCCCCCCCeEEEEEccccccCChhhHhHhhhcccceEEEeeeC
Q 021657          244 ---DKVVDFHWNASDPWTVVSVSDDCDSTGGGGTLQIWRMSDLIYRPQDEVLAELEKFKAHVISCTSK  308 (309)
Q Consensus       244 ---~~v~~~~~~~~~~~~~~s~s~d~~s~~~dg~v~vw~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~  308 (309)
                         -+|++++|+|-.+.++        |||.||.|.+||+.      +.+.+.++.+.+..|.+++|+
T Consensus       230 ~~~yPVNai~Fhp~~~tfa--------TgGsDG~V~~Wd~~------~rKrl~q~~~~~~SI~slsfs  283 (323)
T KOG1036|consen  230 EIIYPVNAIAFHPIHGTFA--------TGGSDGIVNIWDLF------NRKRLKQLAKYETSISSLSFS  283 (323)
T ss_pred             eEEEEeceeEeccccceEE--------ecCCCceEEEccCc------chhhhhhccCCCCceEEEEec
Confidence               3799999999877666        88888999999999      788899998888889999885

>KOG0269 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.97  E-value=8.7e-30  Score=206.43  Aligned_cols=212  Identities=25%  Similarity=0.521  Sum_probs=176.5

Q ss_pred             cccCCCCCcceEEEEECCC-CCEEEEecCCCcEEEEeCCccccccccCCccccccCCCCceeecCCCCCCCCcccCCCCC
Q 021657            2 EILTGHQDNAEFALAMCPT-EPYVLSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPS   80 (309)
Q Consensus         2 ~~l~~H~~~~V~~~~~~~~-~~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (309)
                      ..|..|+. .|++++|++. ..+|++||+||+|++||++..                                       
T Consensus       127 ~~f~EH~R-s~~~ldfh~tep~iliSGSQDg~vK~~DlR~~---------------------------------------  166 (839)
T KOG0269|consen  127 TVFNEHER-SANKLDFHSTEPNILISGSQDGTVKCWDLRSK---------------------------------------  166 (839)
T ss_pred             hHhhhhcc-ceeeeeeccCCccEEEecCCCceEEEEeeecc---------------------------------------
Confidence            46789999 8999999995 567889999999999999843                                       


Q ss_pred             cCcccccccccCCeEEEEEecCCCcEEEEEcCCCeEEEEEcCCCCcceEEEeeccCCceeEEEeccCCCCeEEEEcCCCc
Q 021657           81 VGPRGIYNGHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNS  160 (309)
Q Consensus        81 ~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~  160 (309)
                       +....+.+....|.++.|+|..+..|+++.+.|.+++||++.... ....+.+|.++|.|+.|+| ++.+||+|+.|+.
T Consensus       167 -~S~~t~~~nSESiRDV~fsp~~~~~F~s~~dsG~lqlWDlRqp~r-~~~k~~AH~GpV~c~nwhP-nr~~lATGGRDK~  243 (839)
T KOG0269|consen  167 -KSKSTFRSNSESIRDVKFSPGYGNKFASIHDSGYLQLWDLRQPDR-CEKKLTAHNGPVLCLNWHP-NREWLATGGRDKM  243 (839)
T ss_pred             -cccccccccchhhhceeeccCCCceEEEecCCceEEEeeccCchh-HHHHhhcccCceEEEeecC-CCceeeecCCCcc
Confidence             334455667789999999998779999999999999999998764 5667789999999999999 9999999999999


Q ss_pred             EEEEecCCCCCCCCCCceeeeccCCCCeeEEEEecCCCcEEEEec--CCCcEEEEeCCcccccccCCCCCcCCCCceeee
Q 021657          161 VRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSA--EDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQ  238 (309)
Q Consensus       161 i~i~d~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~--~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~  238 (309)
                      |+|||+....    .+++.++. ...++.+++|-|+.++.||+++  .|-.|+|||++.              |..+...
T Consensus       244 vkiWd~t~~~----~~~~~tIn-Tiapv~rVkWRP~~~~hLAtcsmv~dtsV~VWDvrR--------------PYIP~~t  304 (839)
T KOG0269|consen  244 VKIWDMTDSR----AKPKHTIN-TIAPVGRVKWRPARSYHLATCSMVVDTSVHVWDVRR--------------PYIPYAT  304 (839)
T ss_pred             EEEEeccCCC----ccceeEEe-ecceeeeeeeccCccchhhhhhccccceEEEEeecc--------------cccccee
Confidence            9999998643    45555665 4678999999999999898876  478899999987              3456778


Q ss_pred             ecCCCcceeeEEEccCCCeEEEEecCCCCCCCCCCeEEEEEccc
Q 021657          239 HAGHRDKVVDFHWNASDPWTVVSVSDDCDSTGGGGTLQIWRMSD  282 (309)
Q Consensus       239 ~~~~~~~v~~~~~~~~~~~~~~s~s~d~~s~~~dg~v~vw~~~~  282 (309)
                      +..|...++.++|...+..++.++|.|       |+|..-.+++
T Consensus       305 ~~eH~~~vt~i~W~~~d~~~l~s~sKD-------~tv~qh~~kn  341 (839)
T KOG0269|consen  305 FLEHTDSVTGIAWDSGDRINLWSCSKD-------GTVLQHLFKN  341 (839)
T ss_pred             eeccCccccceeccCCCceeeEeecCc-------cHHHHhhhhc
Confidence            899999999999988667777766666       6665555543

>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]

Probab=99.97  E-value=9.6e-29  Score=203.68  Aligned_cols=218  Identities=23%  Similarity=0.431  Sum_probs=187.0

Q ss_pred             ccCCCCCcceEEEEECCCCCEEEEecCCCcEEEEeCCccccccccCCccccccCCCCceeecCCCCCCCCcccCCCCCcC
Q 021657            3 ILTGHQDNAEFALAMCPTEPYVLSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVG   82 (309)
Q Consensus         3 ~l~~H~~~~V~~~~~~~~~~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   82 (309)
                      .+.+|....+.+..|+  +.++++++.|++|++||..+.                                        .
T Consensus       202 ~~~~~~~~~~~~~q~~--~~~~~~~s~~~tl~~~~~~~~----------------------------------------~  239 (537)
T KOG0274|consen  202 VLLGTDDHVVLCLQLH--DGFFKSGSDDSTLHLWDLNNG----------------------------------------Y  239 (537)
T ss_pred             eecccCcchhhhheee--cCeEEecCCCceeEEeecccc----------------------------------------e
Confidence            3455555578888887  678999999999999998743                                        3


Q ss_pred             cccc-cccccCCeEEEEEecCCCcEEEEEcCCCeEEEEEcCCCCcceEEEeeccCCceeEEEeccCCCCeEEEEcCCCcE
Q 021657           83 PRGI-YNGHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSV  161 (309)
Q Consensus        83 ~~~~-~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i  161 (309)
                      .+.. +.+|.+.|+++++.. +..++++|+.|.++++||..+++  +...+.+|.+.+.++...   +..+++|+.|.+|
T Consensus       240 ~i~~~l~GH~g~V~~l~~~~-~~~~lvsgS~D~t~rvWd~~sg~--C~~~l~gh~stv~~~~~~---~~~~~sgs~D~tV  313 (537)
T KOG0274|consen  240 LILTRLVGHFGGVWGLAFPS-GGDKLVSGSTDKTERVWDCSTGE--CTHSLQGHTSSVRCLTID---PFLLVSGSRDNTV  313 (537)
T ss_pred             EEEeeccCCCCCceeEEEec-CCCEEEEEecCCcEEeEecCCCc--EEEEecCCCceEEEEEcc---CceEeeccCCceE
Confidence            3334 889999999999976 44889999999999999999999  899999999999999874   4788889999999


Q ss_pred             EEEecCCCCCCCCCCceeeeccCCCCeeEEEEecCCCcEEEEecCCCcEEEEeCCcccccccCCCCCcCCCCceeeeecC
Q 021657          162 RMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAG  241 (309)
Q Consensus       162 ~i~d~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~  241 (309)
                      ++|++.+      +..+..+.+|..+|+++..+  +. ++++|+.|+.|++||+..               .+++..+.+
T Consensus       314 kVW~v~n------~~~l~l~~~h~~~V~~v~~~--~~-~lvsgs~d~~v~VW~~~~---------------~~cl~sl~g  369 (537)
T KOG0274|consen  314 KVWDVTN------GACLNLLRGHTGPVNCVQLD--EP-LLVSGSYDGTVKVWDPRT---------------GKCLKSLSG  369 (537)
T ss_pred             EEEeccC------cceEEEeccccccEEEEEec--CC-EEEEEecCceEEEEEhhh---------------ceeeeeecC
Confidence            9999999      89999999999999999998  44 467999999999999997               677889999


Q ss_pred             CCcceeeEEEccCCCeEEEEecCCCCCCCCCCeEEEEEccccccCChh-hHhHhhhcccceEEEeee
Q 021657          242 HRDKVVDFHWNASDPWTVVSVSDDCDSTGGGGTLQIWRMSDLIYRPQD-EVLAELEKFKAHVISCTS  307 (309)
Q Consensus       242 ~~~~v~~~~~~~~~~~~~~s~s~d~~s~~~dg~v~vw~~~~~~~~~~~-~~~~~~~~h~~~v~~~~~  307 (309)
                      |..+|+++.+.+. ..++        +|+.|++|++||+.      +. +++.++.+|..-|..+.+
T Consensus       370 H~~~V~sl~~~~~-~~~~--------Sgs~D~~IkvWdl~------~~~~c~~tl~~h~~~v~~l~~  421 (537)
T KOG0274|consen  370 HTGRVYSLIVDSE-NRLL--------SGSLDTTIKVWDLR------TKRKCIHTLQGHTSLVSSLLL  421 (537)
T ss_pred             CcceEEEEEecCc-ceEE--------eeeeccceEeecCC------chhhhhhhhcCCccccccccc
Confidence            9999999988864 4444        55666999999999      66 899999999988876654

>KOG0294 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.97  E-value=3.1e-28  Score=178.18  Aligned_cols=205  Identities=20%  Similarity=0.388  Sum_probs=155.5

Q ss_pred             ccCCCCCcceEEEEECCCCCEEEEecCCCcEEEEeCCccccccccCCccccccCCCCceeecCCCCCCCCcccCCCCCcC
Q 021657            3 ILTGHQDNAEFALAMCPTEPYVLSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVG   82 (309)
Q Consensus         3 ~l~~H~~~~V~~~~~~~~~~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   82 (309)
                      .+.+|.+ +|++++.  ++.++|+||.|-+|+|||+...                                        .
T Consensus        38 ~~~aH~~-sitavAV--s~~~~aSGssDetI~IYDm~k~----------------------------------------~   74 (362)
T KOG0294|consen   38 AFSAHAG-SITALAV--SGPYVASGSSDETIHIYDMRKR----------------------------------------K   74 (362)
T ss_pred             ccccccc-ceeEEEe--cceeEeccCCCCcEEEEeccch----------------------------------------h
Confidence            4678999 8999999  5899999999999999999842                                        3


Q ss_pred             cccccccccCCeEEEEEecCC-CcEEEEEcCCCeEEEEEcCCCCcceEEEeeccCCceeEEEeccCCCCeEEEEcCCCcE
Q 021657           83 PRGIYNGHEDTVEDVTFCPSS-AQEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSV  161 (309)
Q Consensus        83 ~~~~~~~~~~~v~~~~~~~~~-~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i  161 (309)
                      .+..+-.|.+.|+++.|.+.- ...|++|+.||.|.+|+...-.  ....+++|...|+.++.+| .+++.++.+.|+.+
T Consensus        75 qlg~ll~HagsitaL~F~~~~S~shLlS~sdDG~i~iw~~~~W~--~~~slK~H~~~Vt~lsiHP-S~KLALsVg~D~~l  151 (362)
T KOG0294|consen   75 QLGILLSHAGSITALKFYPPLSKSHLLSGSDDGHIIIWRVGSWE--LLKSLKAHKGQVTDLSIHP-SGKLALSVGGDQVL  151 (362)
T ss_pred             hhcceeccccceEEEEecCCcchhheeeecCCCcEEEEEcCCeE--EeeeecccccccceeEecC-CCceEEEEcCCcee
Confidence            345566799999999998764 2379999999999999986655  8999999999999999999 99999999999999


Q ss_pred             EEEecCCCCCCCCCCceeeeccCCCCeeEEEEecCCCc--------------------------------------EEEE
Q 021657          162 RMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWSPDKSS--------------------------------------VFGS  203 (309)
Q Consensus       162 ~i~d~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~--------------------------------------l~~~  203 (309)
                      +.||+-..      +.-..+.- ....+.+.|+|.|.+                                      .+++
T Consensus       152 r~WNLV~G------r~a~v~~L-~~~at~v~w~~~Gd~F~v~~~~~i~i~q~d~A~v~~~i~~~~r~l~~~~l~~~~L~v  224 (362)
T KOG0294|consen  152 RTWNLVRG------RVAFVLNL-KNKATLVSWSPQGDHFVVSGRNKIDIYQLDNASVFREIENPKRILCATFLDGSELLV  224 (362)
T ss_pred             eeehhhcC------ccceeecc-CCcceeeEEcCCCCEEEEEeccEEEEEecccHhHhhhhhccccceeeeecCCceEEE
Confidence            99999773      22221110 111122344443332                                      1346


Q ss_pred             ecCCCcEEEEeCCcccccccCCCCCcCCCCceeeeecCCCcceeeEE-EccCCCeEEEEecCCCCCCCCCCeEEEEEccc
Q 021657          204 SAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKVVDFH-WNASDPWTVVSVSDDCDSTGGGGTLQIWRMSD  282 (309)
Q Consensus       204 ~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~-~~~~~~~~~~s~s~d~~s~~~dg~v~vw~~~~  282 (309)
                      |++|+.|.+||...               ..+...+.+|..+|.++. +.....++++++|.|       |.|+|||++.
T Consensus       225 G~d~~~i~~~D~ds---------------~~~~~~~~AH~~RVK~i~~~~~~~~~~lvTaSSD-------G~I~vWd~~~  282 (362)
T KOG0294|consen  225 GGDNEWISLKDTDS---------------DTPLTEFLAHENRVKDIASYTNPEHEYLVTASSD-------GFIKVWDIDM  282 (362)
T ss_pred             ecCCceEEEeccCC---------------CccceeeecchhheeeeEEEecCCceEEEEeccC-------ceEEEEEccc
Confidence            66667777777665               345677899999999998 443345667755554       9999999984

>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]

Probab=99.97  E-value=3.1e-29  Score=186.69  Aligned_cols=244  Identities=19%  Similarity=0.324  Sum_probs=190.5

Q ss_pred             cccCCCCCcceEEEEECCCCCEEEEecCCCcEEEEeCCccccccccCCccccccCCCCceeecCCCCCCCCcccCCCCCc
Q 021657            2 EILTGHQDNAEFALAMCPTEPYVLSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSV   81 (309)
Q Consensus         2 ~~l~~H~~~~V~~~~~~~~~~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (309)
                      +++++|.+ .|..|+++.  ..+++++.|++|+.|.++.+  ............+....-........+..+.+|+....
T Consensus       103 ~~f~AH~G-~V~Gi~v~~--~~~~tvgdDKtvK~wk~~~~--p~~tilg~s~~~gIdh~~~~~~FaTcGe~i~IWD~~R~  177 (433)
T KOG0268|consen  103 RTFKAHEG-LVRGICVTQ--TSFFTVGDDKTVKQWKIDGP--PLHTILGKSVYLGIDHHRKNSVFATCGEQIDIWDEQRD  177 (433)
T ss_pred             heeecccC-ceeeEEecc--cceEEecCCcceeeeeccCC--cceeeeccccccccccccccccccccCceeeecccccC
Confidence            57899999 999999976  77999999999999998763  11111111112222222223334556778999999999


Q ss_pred             CcccccccccCCeEEEEEecCCCcEEEEEcCCCeEEEEEcCCCCcceEEEeeccCCceeEEEeccCCCCeEEEEcCCCcE
Q 021657           82 GPRGIYNGHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSV  161 (309)
Q Consensus        82 ~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i  161 (309)
                      .|+..+.--...|.++.|+|....+|++|+.|+.|.|||+++...  .+... ..-.-+.++|+| +...|++|+.|..+
T Consensus       178 ~Pv~smswG~Dti~svkfNpvETsILas~~sDrsIvLyD~R~~~P--l~KVi-~~mRTN~IswnP-eafnF~~a~ED~nl  253 (433)
T KOG0268|consen  178 NPVSSMSWGADSISSVKFNPVETSILASCASDRSIVLYDLRQASP--LKKVI-LTMRTNTICWNP-EAFNFVAANEDHNL  253 (433)
T ss_pred             CccceeecCCCceeEEecCCCcchheeeeccCCceEEEecccCCc--cceee-eeccccceecCc-cccceeeccccccc
Confidence            999999988899999999999888999999999999999998873  32221 123456899999 99999999999999


Q ss_pred             EEEecCCCCCCCCCCceeeeccCCCCeeEEEEecCCCcEEEEecCCCcEEEEeCCcccccccCCCCCcCCCCceeeeecC
Q 021657          162 RMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAG  241 (309)
Q Consensus       162 ~i~d~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~  241 (309)
                      +.||++..     ..++....+|.+.|.+++|+|.|+- |++|+.|.+|+||..+.... ..            ++ ..-
T Consensus       254 Y~~DmR~l-----~~p~~v~~dhvsAV~dVdfsptG~E-fvsgsyDksIRIf~~~~~~S-Rd------------iY-htk  313 (433)
T KOG0268|consen  254 YTYDMRNL-----SRPLNVHKDHVSAVMDVDFSPTGQE-FVSGSYDKSIRIFPVNHGHS-RD------------IY-HTK  313 (433)
T ss_pred             eehhhhhh-----cccchhhcccceeEEEeccCCCcch-hccccccceEEEeecCCCcc-hh------------hh-hHh
Confidence            99999996     6788899999999999999999996 67999999999999987211 10            10 112


Q ss_pred             CCcceeeEEEccCCCeEEEEecCCCCCCCCCCeEEEEEccc
Q 021657          242 HRDKVVDFHWNASDPWTVVSVSDDCDSTGGGGTLQIWRMSD  282 (309)
Q Consensus       242 ~~~~v~~~~~~~~~~~~~~s~s~d~~s~~~dg~v~vw~~~~  282 (309)
                      ..+.|.++.|+-|..+++        ||+.|+.|++|....
T Consensus       314 RMq~V~~Vk~S~Dskyi~--------SGSdd~nvRlWka~A  346 (433)
T KOG0268|consen  314 RMQHVFCVKYSMDSKYII--------SGSDDGNVRLWKAKA  346 (433)
T ss_pred             hhheeeEEEEeccccEEE--------ecCCCcceeeeecch
Confidence            345799999999888766        666669999999774

>KOG0641 consensus WD40 repeat protein [General function prediction only]

Probab=99.97  E-value=1.3e-27  Score=167.61  Aligned_cols=239  Identities=15%  Similarity=0.227  Sum_probs=167.9

Q ss_pred             ceEEEEECCCCCEEEEecCCCcEEEEeCCccccccccCCccccccCCCCceeecCCCCCCCCcccCCCCCcCcccccccc
Q 021657           11 AEFALAMCPTEPYVLSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGH   90 (309)
Q Consensus        11 ~V~~~~~~~~~~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   90 (309)
                      +|.+++|+|.|.+.+.|+..+++||-....-............    .                     ..-..+.-+.|
T Consensus        34 airav~fhp~g~lyavgsnskt~ric~yp~l~~~r~~hea~~~----p---------------------p~v~~kr~khh   88 (350)
T KOG0641|consen   34 AIRAVAFHPAGGLYAVGSNSKTFRICAYPALIDLRHAHEAAKQ----P---------------------PSVLCKRNKHH   88 (350)
T ss_pred             heeeEEecCCCceEEeccCCceEEEEccccccCcccccccccC----C---------------------CeEEeeecccc
Confidence            6999999999999999999999998765432211111100000    0                     00001223457


Q ss_pred             cCCeEEEEEecCCCcEEEEEcCCCeEEEEEcCCCCcc-------------------------------------------
Q 021657           91 EDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSP-------------------------------------------  127 (309)
Q Consensus        91 ~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~-------------------------------------------  127 (309)
                      .+.|.|.+|+|.| .++++|++|.+|++.-++.....                                           
T Consensus        89 kgsiyc~~ws~~g-eliatgsndk~ik~l~fn~dt~~~~g~dle~nmhdgtirdl~fld~~~s~~~il~s~gagdc~iy~  167 (350)
T KOG0641|consen   89 KGSIYCTAWSPCG-ELIATGSNDKTIKVLPFNADTCNATGHDLEFNMHDGTIRDLAFLDDPESGGAILASAGAGDCKIYI  167 (350)
T ss_pred             CccEEEEEecCcc-CeEEecCCCceEEEEecccccccccCcceeeeecCCceeeeEEecCCCcCceEEEecCCCcceEEE
Confidence            8888888888888 78888888888888765432210                                           


Q ss_pred             -------eEEEeeccCCceeEEEeccCCCCeEEEEcCCCcEEEEecCCCCCCCCCCceeeecc-------CCCCeeEEEE
Q 021657          128 -------VIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEG-------HSAAVLCVQW  193 (309)
Q Consensus       128 -------~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~-------~~~~v~~~~~  193 (309)
                             ...-+.+|.+.|.++- +- ++-++++|+.|.+|++||++.      ..++.++..       ....|.+++.
T Consensus       168 tdc~~g~~~~a~sghtghilaly-sw-n~~m~~sgsqdktirfwdlrv------~~~v~~l~~~~~~~glessavaav~v  239 (350)
T KOG0641|consen  168 TDCGRGQGFHALSGHTGHILALY-SW-NGAMFASGSQDKTIRFWDLRV------NSCVNTLDNDFHDGGLESSAVAAVAV  239 (350)
T ss_pred             eecCCCCcceeecCCcccEEEEE-Ee-cCcEEEccCCCceEEEEeeec------cceeeeccCcccCCCcccceeEEEEE
Confidence                   1222334555444441 22 577899999999999999998      555655532       2367999999


Q ss_pred             ecCCCcEEEEecCCCcEEEEeCCcccccccCCCCCcCCCCceeeeecCCCcceeeEEEccCCCeEEEEecCCCCCCCCCC
Q 021657          194 SPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKVVDFHWNASDPWTVVSVSDDCDSTGGGG  273 (309)
Q Consensus       194 ~~~~~~l~~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~s~d~~s~~~dg  273 (309)
                      .|.|+ |+++|-.|....+||++.               ..++..+..|...|.++.|+|. .++++++|.|       .
T Consensus       240 dpsgr-ll~sg~~dssc~lydirg---------------~r~iq~f~phsadir~vrfsp~-a~yllt~syd-------~  295 (350)
T KOG0641|consen  240 DPSGR-LLASGHADSSCMLYDIRG---------------GRMIQRFHPHSADIRCVRFSPG-AHYLLTCSYD-------M  295 (350)
T ss_pred             CCCcc-eeeeccCCCceEEEEeeC---------------CceeeeeCCCccceeEEEeCCC-ceEEEEeccc-------c
Confidence            99999 688999999999999998               5677888999999999999995 4555555555       9


Q ss_pred             eEEEEEccccccCChhhHhHhhhcccceEEEeeeCC
Q 021657          274 TLQIWRMSDLIYRPQDEVLAELEKFKAHVISCTSKP  309 (309)
Q Consensus       274 ~v~vw~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~P  309 (309)
                      .|++-|+....  ...-++..+..|++.+..+.|||
T Consensus       296 ~ikltdlqgdl--a~el~~~vv~ehkdk~i~~rwh~  329 (350)
T KOG0641|consen  296 KIKLTDLQGDL--AHELPIMVVAEHKDKAIQCRWHP  329 (350)
T ss_pred             eEEEeecccch--hhcCceEEEEeccCceEEEEecC
Confidence            99999997211  01122334457999999999997

>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]

Probab=99.97  E-value=1.4e-28  Score=206.52  Aligned_cols=247  Identities=20%  Similarity=0.350  Sum_probs=188.8

Q ss_pred             cccCCCCCcceEEEEECCCCCEEEEecCCCcEEEEeCCccccccccCCccccccCCCCceeecCCCCCCCCcccCCCCCc
Q 021657            2 EILTGHQDNAEFALAMCPTEPYVLSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSV   81 (309)
Q Consensus         2 ~~l~~H~~~~V~~~~~~~~~~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (309)
                      .++..|.+ .|+|+.|+|||++||+|+.|+.|.||+... ...                     ..........-+.+..
T Consensus        63 ~~m~~h~~-sv~CVR~S~dG~~lAsGSDD~~v~iW~~~~-~~~---------------------~~~fgs~g~~~~vE~w  119 (942)
T KOG0973|consen   63 CTMDDHDG-SVNCVRFSPDGSYLASGSDDRLVMIWERAE-IGS---------------------GTVFGSTGGAKNVESW  119 (942)
T ss_pred             eeeccccC-ceeEEEECCCCCeEeeccCcceEEEeeecc-cCC---------------------ccccccccccccccee
Confidence            45678998 899999999999999999999999999863 100                     0000111122244566


Q ss_pred             CcccccccccCCeEEEEEecCCCcEEEEEcCCCeEEEEEcCCCCcceEEEeeccCCceeEEEeccCCCCeEEEEcCCCcE
Q 021657           82 GPRGIYNGHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSV  161 (309)
Q Consensus        82 ~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i  161 (309)
                      +.+..+.+|...|.+++|+|++ .+|++++.|++|.|||..+.+  ....+.+|...|-.+.|+| -|++|++-+.|++|
T Consensus       120 k~~~~l~~H~~DV~Dv~Wsp~~-~~lvS~s~DnsViiwn~~tF~--~~~vl~~H~s~VKGvs~DP-~Gky~ASqsdDrti  195 (942)
T KOG0973|consen  120 KVVSILRGHDSDVLDVNWSPDD-SLLVSVSLDNSVIIWNAKTFE--LLKVLRGHQSLVKGVSWDP-IGKYFASQSDDRTL  195 (942)
T ss_pred             eEEEEEecCCCccceeccCCCc-cEEEEecccceEEEEccccce--eeeeeecccccccceEECC-ccCeeeeecCCceE
Confidence            7788899999999999999988 999999999999999999986  8899999999999999999 99999999999999


Q ss_pred             EEEecCCCCCCCCCCceeeeccC------CCCeeEEEEecCCCcEEEEecCC---CcEEEEeCCcccccccCCCCCcCCC
Q 021657          162 RMFDRRNLTSNGVGSPINKFEGH------SAAVLCVQWSPDKSSVFGSSAED---GLLNIWDYEKVGKKVEQGPRTTNYP  232 (309)
Q Consensus       162 ~i~d~~~~~~~~~~~~~~~~~~~------~~~v~~~~~~~~~~~l~~~~~~d---g~i~iwd~~~~~~~~~~~~~~~~~~  232 (309)
                      +||+..+      ....+.+..+      ...+..+.|+|||.+|.+.-+.+   .++.|.+..+               
T Consensus       196 kvwrt~d------w~i~k~It~pf~~~~~~T~f~RlSWSPDG~~las~nA~n~~~~~~~IieR~t---------------  254 (942)
T KOG0973|consen  196 KVWRTSD------WGIEKSITKPFEESPLTTFFLRLSWSPDGHHLASPNAVNGGKSTIAIIERGT---------------  254 (942)
T ss_pred             EEEEccc------ceeeEeeccchhhCCCcceeeecccCCCcCeecchhhccCCcceeEEEecCC---------------
Confidence            9999776      4455554432      34578999999999854333333   3466666655               


Q ss_pred             CceeeeecCCCcceeeEEEccC------C---------Ce-EEEEecCCCCCCCCCCeEEEEEccccccCChhhHhHhhh
Q 021657          233 AGLFFQHAGHRDKVVDFHWNAS------D---------PW-TVVSVSDDCDSTGGGGTLQIWRMSDLIYRPQDEVLAELE  296 (309)
Q Consensus       233 ~~~~~~~~~~~~~v~~~~~~~~------~---------~~-~~~s~s~d~~s~~~dg~v~vw~~~~~~~~~~~~~~~~~~  296 (309)
                      ...-..+-||..++..+.|+|.      .         .+ ++|+||       .|++|.||...      ..+++....
T Consensus       255 Wk~~~~LvGH~~p~evvrFnP~lfe~~~~ng~~~~~~~~y~i~AvgS-------qDrSlSVW~T~------~~RPl~vi~  321 (942)
T KOG0973|consen  255 WKVDKDLVGHSAPVEVVRFNPKLFERNNKNGTSTQPNCYYCIAAVGS-------QDRSLSVWNTA------LPRPLFVIH  321 (942)
T ss_pred             ceeeeeeecCCCceEEEEeChHHhccccccCCccCCCcceEEEEEec-------CCccEEEEecC------CCCchhhhh
Confidence            2334567899999999999982      1         12 566444       55999999997      455544332


Q ss_pred             -cccceEEEeeeCC
Q 021657          297 -KFKAHVISCTSKP  309 (309)
Q Consensus       297 -~h~~~v~~~~~~P  309 (309)
                       -....|.++.|+|
T Consensus       322 ~lf~~SI~DmsWsp  335 (942)
T KOG0973|consen  322 NLFNKSIVDMSWSP  335 (942)
T ss_pred             hhhcCceeeeeEcC
Confidence             3456899999987

>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]

Probab=99.97  E-value=9.2e-30  Score=189.44  Aligned_cols=265  Identities=18%  Similarity=0.287  Sum_probs=180.8

Q ss_pred             CcccCCCCCcceEEEEECCCC-CEEEEecCCCcEEEEeCCccccccccCCccccccCCCCceeecCCCCCCCCcccCCCC
Q 021657            1 MEILTGHQDNAEFALAMCPTE-PYVLSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGP   79 (309)
Q Consensus         1 l~~l~~H~~~~V~~~~~~~~~-~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   79 (309)
                      |..|.||.+ -|.|++=+|.. ..+++|+.||.|+|||+....+...+........+-......+.....+..++.|...
T Consensus        59 v~~L~gHrd-GV~~lakhp~~ls~~aSGs~DG~VkiWnlsqR~~~~~f~AH~G~V~Gi~v~~~~~~tvgdDKtvK~wk~~  137 (433)
T KOG0268|consen   59 VGSLDGHRD-GVSCLAKHPNKLSTVASGSCDGEVKIWNLSQRECIRTFKAHEGLVRGICVTQTSFFTVGDDKTVKQWKID  137 (433)
T ss_pred             hhhcccccc-ccchhhcCcchhhhhhccccCceEEEEehhhhhhhheeecccCceeeEEecccceEEecCCcceeeeecc
Confidence            356899999 69999999977 7799999999999999987654444433221111100000122222334445555433


Q ss_pred             CcCcccccccccCCeEEEEEecCCCcEEEEEcCCCeEEEEEcCCCCcceEEEeeccCCceeEEEeccCCCCeEEEEcCCC
Q 021657           80 SVGPRGIYNGHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADN  159 (309)
Q Consensus        80 ~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg  159 (309)
                      . .+..++.+ ...+..+.-+..+ ..|+|||.+  |.|||.+-..  ++..+.-....|.++.|+|.....|++++.|+
T Consensus       138 ~-~p~~tilg-~s~~~gIdh~~~~-~~FaTcGe~--i~IWD~~R~~--Pv~smswG~Dti~svkfNpvETsILas~~sDr  210 (433)
T KOG0268|consen  138 G-PPLHTILG-KSVYLGIDHHRKN-SVFATCGEQ--IDIWDEQRDN--PVSSMSWGADSISSVKFNPVETSILASCASDR  210 (433)
T ss_pred             C-Ccceeeec-ccccccccccccc-ccccccCce--eeecccccCC--ccceeecCCCceeEEecCCCcchheeeeccCC
Confidence            3 13333332 2334455544444 567776653  6777765544  45555556678999999997788999999999


Q ss_pred             cEEEEecCCCCCCCCCCceeeeccCCCCeeEEEEecCCCcEEEEecCCCcEEEEeCCcccccccCCCCCcCCCCceeeee
Q 021657          160 SVRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQH  239 (309)
Q Consensus       160 ~i~i~d~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~  239 (309)
                      .|.+||+|+      ..++..... .-.-+.|+|+|.. +.|++|++|..++.||++....              ++..+
T Consensus       211 sIvLyD~R~------~~Pl~KVi~-~mRTN~IswnPea-fnF~~a~ED~nlY~~DmR~l~~--------------p~~v~  268 (433)
T KOG0268|consen  211 SIVLYDLRQ------ASPLKKVIL-TMRTNTICWNPEA-FNFVAANEDHNLYTYDMRNLSR--------------PLNVH  268 (433)
T ss_pred             ceEEEeccc------CCccceeee-eccccceecCccc-cceeeccccccceehhhhhhcc--------------cchhh
Confidence            999999999      777776652 3456789999954 4688999999999999998433              45677


Q ss_pred             cCCCcceeeEEEccCCCeEEEEecCCCCCCCCCCeEEEEEccccccCChhhHhHhhhcccceEEEeeeC
Q 021657          240 AGHRDKVVDFHWNASDPWTVVSVSDDCDSTGGGGTLQIWRMSDLIYRPQDEVLAELEKFKAHVISCTSK  308 (309)
Q Consensus       240 ~~~~~~v~~~~~~~~~~~~~~s~s~d~~s~~~dg~v~vw~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~  308 (309)
                      .+|.+.|.++.|+|.|..++        ||+.|.+|+||.++...   +.+...+  .--..|.++.|+
T Consensus       269 ~dhvsAV~dVdfsptG~Efv--------sgsyDksIRIf~~~~~~---SRdiYht--kRMq~V~~Vk~S  324 (433)
T KOG0268|consen  269 KDHVSAVMDVDFSPTGQEFV--------SGSYDKSIRIFPVNHGH---SRDIYHT--KRMQHVFCVKYS  324 (433)
T ss_pred             cccceeEEEeccCCCcchhc--------cccccceEEEeecCCCc---chhhhhH--hhhheeeEEEEe
Confidence            89999999999999999877        77777999999999532   1111111  112467777765

>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.97  E-value=1.2e-28  Score=174.30  Aligned_cols=217  Identities=21%  Similarity=0.345  Sum_probs=171.8

Q ss_pred             CcccCCCCCcceEEEEECC--CCCEEEEecCCCcEEEEeCCccccccccCCccccccCCCCceeecCCCCCCCCcccCCC
Q 021657            1 MEILTGHQDNAEFALAMCP--TEPYVLSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADG   78 (309)
Q Consensus         1 l~~l~~H~~~~V~~~~~~~--~~~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   78 (309)
                      +.+|+||.+ ||+.++|.-  .|.+||++++||.|.||.-+++                                     
T Consensus        49 l~~L~Gh~G-PVwqv~wahPk~G~iLAScsYDgkVIiWke~~g-------------------------------------   90 (299)
T KOG1332|consen   49 LAELTGHSG-PVWKVAWAHPKFGTILASCSYDGKVIIWKEENG-------------------------------------   90 (299)
T ss_pred             eeEecCCCC-CeeEEeecccccCcEeeEeecCceEEEEecCCC-------------------------------------
Confidence            457999999 999999964  7999999999999999997754                                     


Q ss_pred             CCcCcccccccccCCeEEEEEecCC-CcEEEEEcCCCeEEEEEcCCC-CcceEEEeeccCCceeEEEeccCC---C----
Q 021657           79 PSVGPRGIYNGHEDTVEDVTFCPSS-AQEFCSVGDDSCLILWDARVG-TSPVIKVEKAHDADLHCVDWNPLD---D----  149 (309)
Q Consensus        79 ~~~~~~~~~~~~~~~v~~~~~~~~~-~~~l~s~~~dg~i~iwd~~~~-~~~~~~~~~~~~~~v~~~~~~~~~---~----  149 (309)
                       ..........|...|++++|.|.+ +..|++++.||.|.|.+.+.. ..........|.-.|++++|.| .   +    
T Consensus        91 -~w~k~~e~~~h~~SVNsV~wapheygl~LacasSDG~vsvl~~~~~g~w~t~ki~~aH~~GvnsVswap-a~~~g~~~~  168 (299)
T KOG1332|consen   91 -RWTKAYEHAAHSASVNSVAWAPHEYGLLLACASSDGKVSVLTYDSSGGWTTSKIVFAHEIGVNSVSWAP-ASAPGSLVD  168 (299)
T ss_pred             -chhhhhhhhhhcccceeecccccccceEEEEeeCCCcEEEEEEcCCCCccchhhhhccccccceeeecC-cCCCccccc
Confidence             222345567799999999999874 367899999999999998765 4445566778999999999998 4   2    


Q ss_pred             -------CeEEEEcCCCcEEEEecCCCCCCCCCCceeeeccCCCCeeEEEEecCC---CcEEEEecCCCcEEEEeCCccc
Q 021657          150 -------NLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWSPDK---SSVFGSSAEDGLLNIWDYEKVG  219 (309)
Q Consensus       150 -------~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~---~~l~~~~~~dg~i~iwd~~~~~  219 (309)
                             +.|++|+.|..|+||+..+..    ...-+++.+|...|+.++|.|.-   +..+|++++||++.||-.+...
T Consensus       169 ~~~~~~~krlvSgGcDn~VkiW~~~~~~----w~~e~~l~~H~dwVRDVAwaP~~gl~~s~iAS~SqDg~viIwt~~~e~  244 (299)
T KOG1332|consen  169 QGPAAKVKRLVSGGCDNLVKIWKFDSDS----WKLERTLEGHKDWVRDVAWAPSVGLPKSTIASCSQDGTVIIWTKDEEY  244 (299)
T ss_pred             cCcccccceeeccCCccceeeeecCCcc----hhhhhhhhhcchhhhhhhhccccCCCceeeEEecCCCcEEEEEecCcc
Confidence                   569999999999999998742    45556689999999999999964   3457899999999999987522


Q ss_pred             ccccCCCCCcCCCCceeeeecCCCcceeeEEEccCCCeEEEEecCCCCCCCCCCeEEEEEcc
Q 021657          220 KKVEQGPRTTNYPAGLFFQHAGHRDKVVDFHWNASDPWTVVSVSDDCDSTGGGGTLQIWRMS  281 (309)
Q Consensus       220 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~s~d~~s~~~dg~v~vw~~~  281 (309)
                      +.         +...+   +......++.+.|++.+..|.++++        |+.|.+|.-+
T Consensus       245 e~---------wk~tl---l~~f~~~~w~vSWS~sGn~LaVs~G--------dNkvtlwke~  286 (299)
T KOG1332|consen  245 EP---------WKKTL---LEEFPDVVWRVSWSLSGNILAVSGG--------DNKVTLWKEN  286 (299)
T ss_pred             Cc---------ccccc---cccCCcceEEEEEeccccEEEEecC--------CcEEEEEEeC
Confidence            21         11222   2335578999999999987775443        4799999876

>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=99.96  E-value=1.3e-28  Score=189.74  Aligned_cols=219  Identities=19%  Similarity=0.357  Sum_probs=179.4

Q ss_pred             ceEEEEECCCCCE-EEEecCCCcEEEEeCCccccccccCCccccccCCCCceeecCCCCCCCCcccCCCCCcCccccccc
Q 021657           11 AEFALAMCPTEPY-VLSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNG   89 (309)
Q Consensus        11 ~V~~~~~~~~~~~-l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   89 (309)
                      +|.+++|+|..++ +|+.+ .-.+.||+..+                                        ....+.+..
T Consensus        28 ~vssl~fsp~~P~d~aVt~-S~rvqly~~~~----------------------------------------~~~~k~~sr   66 (487)
T KOG0310|consen   28 SVSSLCFSPKHPYDFAVTS-SVRVQLYSSVT----------------------------------------RSVRKTFSR   66 (487)
T ss_pred             cceeEecCCCCCCceEEec-ccEEEEEecch----------------------------------------hhhhhhHHh
Confidence            6999999997665 44333 35888998763                                        233444556


Q ss_pred             ccCCeEEEEEecCCCcEEEEEcCCCeEEEEEcCCCCcceEEEeeccCCceeEEEeccCCCCeEEEEcCCCcEEEEecCCC
Q 021657           90 HEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNL  169 (309)
Q Consensus        90 ~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~  169 (309)
                      ....+.++.|-.|| .+|++|...|.|+|+|..+..  ....+.+|+.++..+.|+|+++..|++|+.|+.+++||+.+ 
T Consensus        67 Fk~~v~s~~fR~DG-~LlaaGD~sG~V~vfD~k~r~--iLR~~~ah~apv~~~~f~~~d~t~l~s~sDd~v~k~~d~s~-  142 (487)
T KOG0310|consen   67 FKDVVYSVDFRSDG-RLLAAGDESGHVKVFDMKSRV--ILRQLYAHQAPVHVTKFSPQDNTMLVSGSDDKVVKYWDLST-  142 (487)
T ss_pred             hccceeEEEeecCC-eEEEccCCcCcEEEeccccHH--HHHHHhhccCceeEEEecccCCeEEEecCCCceEEEEEcCC-
Confidence            67889999999999 899999999999999965543  67788899999999999998888999999999999999998 


Q ss_pred             CCCCCCCceeeeccCCCCeeEEEEecCCCcEEEEecCCCcEEEEeCCcccccccCCCCCcCCCCceeeeecCCCcceeeE
Q 021657          170 TSNGVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKVVDF  249 (309)
Q Consensus       170 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~  249 (309)
                           ......+.+|...|.+.+|+|...+++++|+.||.|++||++...              ..+.+ ..|..+|..+
T Consensus       143 -----a~v~~~l~~htDYVR~g~~~~~~~hivvtGsYDg~vrl~DtR~~~--------------~~v~e-lnhg~pVe~v  202 (487)
T KOG0310|consen  143 -----AYVQAELSGHTDYVRCGDISPANDHIVVTGSYDGKVRLWDTRSLT--------------SRVVE-LNHGCPVESV  202 (487)
T ss_pred             -----cEEEEEecCCcceeEeeccccCCCeEEEecCCCceEEEEEeccCC--------------ceeEE-ecCCCceeeE
Confidence                 565668899999999999999999899999999999999999832              12333 3589999999


Q ss_pred             EEccCCCeEEEEecCCCCCCCCCCeEEEEEccccccCChhhHhHhhhcccceEEEeeeC
Q 021657          250 HWNASDPWTVVSVSDDCDSTGGGGTLQIWRMSDLIYRPQDEVLAELEKFKAHVISCTSK  308 (309)
Q Consensus       250 ~~~~~~~~~~~s~s~d~~s~~~dg~v~vw~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~  308 (309)
                      .+-|.|.. +++++-        +.|++||+..     .++.+..+..|...|+|+.+.
T Consensus       203 l~lpsgs~-iasAgG--------n~vkVWDl~~-----G~qll~~~~~H~KtVTcL~l~  247 (487)
T KOG0310|consen  203 LALPSGSL-IASAGG--------NSVKVWDLTT-----GGQLLTSMFNHNKTVTCLRLA  247 (487)
T ss_pred             EEcCCCCE-EEEcCC--------CeEEEEEecC-----CceehhhhhcccceEEEEEee
Confidence            99997775 444443        4899999984     466677777799999999864

>PTZ00420 coronin; Provisional

Probab=99.96  E-value=2.6e-27  Score=195.95  Aligned_cols=182  Identities=14%  Similarity=0.260  Sum_probs=139.4

Q ss_pred             cccCCCCCcCcccccccccCCeEEEEEecCCCcEEEEEcCCCeEEEEEcCCCCc------ceEEEeeccCCceeEEEecc
Q 021657           73 DKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTS------PVIKVEKAHDADLHCVDWNP  146 (309)
Q Consensus        73 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~------~~~~~~~~~~~~v~~~~~~~  146 (309)
                      +.+|+.....++..+.+|.+.|.+++|+|+.+.+|++|+.||.|+|||+.++..      .....+.+|...|.+++|+|
T Consensus        56 I~L~~~~r~~~v~~L~gH~~~V~~lafsP~~~~lLASgS~DgtIrIWDi~t~~~~~~~i~~p~~~L~gH~~~V~sVaf~P  135 (568)
T PTZ00420         56 IRLENQMRKPPVIKLKGHTSSILDLQFNPCFSEILASGSEDLTIRVWEIPHNDESVKEIKDPQCILKGHKKKISIIDWNP  135 (568)
T ss_pred             EEeeecCCCceEEEEcCCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCCccccccccceEEeecCCCcEEEEEECC
Confidence            344444444566778899999999999998548999999999999999976431      12345678999999999999


Q ss_pred             CCCC-eEEEEcCCCcEEEEecCCCCCCCCCCceeeeccCCCCeeEEEEecCCCcEEEEecCCCcEEEEeCCcccccccCC
Q 021657          147 LDDN-LILTGSADNSVRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQG  225 (309)
Q Consensus       147 ~~~~-~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~dg~i~iwd~~~~~~~~~~~  225 (309)
                       ++. +|++++.|+.|++||+++      ++.+..+. +...|.+++|+|+|.. |++++.|+.|+|||++.        
T Consensus       136 -~g~~iLaSgS~DgtIrIWDl~t------g~~~~~i~-~~~~V~SlswspdG~l-Lat~s~D~~IrIwD~Rs--------  198 (568)
T PTZ00420        136 -MNYYIMCSSGFDSFVNIWDIEN------EKRAFQIN-MPKKLSSLKWNIKGNL-LSGTCVGKHMHIIDPRK--------  198 (568)
T ss_pred             -CCCeEEEEEeCCCeEEEEECCC------CcEEEEEe-cCCcEEEEEECCCCCE-EEEEecCCEEEEEECCC--------
Confidence             665 567899999999999998      66666665 5678999999999995 67888999999999997        


Q ss_pred             CCCcCCCCceeeeecCCCcceee-----EEEccCCCeEEEEecCCCCCCCCCCeEEEEEccc
Q 021657          226 PRTTNYPAGLFFQHAGHRDKVVD-----FHWNASDPWTVVSVSDDCDSTGGGGTLQIWRMSD  282 (309)
Q Consensus       226 ~~~~~~~~~~~~~~~~~~~~v~~-----~~~~~~~~~~~~s~s~d~~s~~~dg~v~vw~~~~  282 (309)
                             ...+..+.+|.+.+..     ..|++++.+++.++.+    ...++.|+|||++.
T Consensus       199 -------g~~i~tl~gH~g~~~s~~v~~~~fs~d~~~IlTtG~d----~~~~R~VkLWDlr~  249 (568)
T PTZ00420        199 -------QEIASSFHIHDGGKNTKNIWIDGLGGDDNYILSTGFS----KNNMREMKLWDLKN  249 (568)
T ss_pred             -------CcEEEEEecccCCceeEEEEeeeEcCCCCEEEEEEcC----CCCccEEEEEECCC
Confidence                   3445667788765433     2345777766644332    12345899999984

>KOG0289 consensus mRNA splicing factor [General function prediction only]

Probab=99.96  E-value=3e-28  Score=185.38  Aligned_cols=218  Identities=20%  Similarity=0.409  Sum_probs=180.0

Q ss_pred             ceEEEEECCCCCEEEEecCCCcEEEEeCCccccccccCCccccccCCCCceeecCCCCCCCCcccCCCCCcCcccccccc
Q 021657           11 AEFALAMCPTEPYVLSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGH   90 (309)
Q Consensus        11 ~V~~~~~~~~~~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   90 (309)
                      .++++...|....++||+.|..+.++|..                                        ..+.+..+.||
T Consensus       221 gi~ald~~~s~~~ilTGG~d~~av~~d~~----------------------------------------s~q~l~~~~Gh  260 (506)
T KOG0289|consen  221 GITALDIIPSSSKILTGGEDKTAVLFDKP----------------------------------------SNQILATLKGH  260 (506)
T ss_pred             CeeEEeecCCCCcceecCCCCceEEEecc----------------------------------------hhhhhhhccCc
Confidence            47888888887899999999999999986                                        45567889999


Q ss_pred             cCCeEEEEEecCCCcEEEEEcCCCeEEEEEcCCCCcceEEEeeccCCceeEEEeccCCCCeEEEEcCCCcEEEEecCCCC
Q 021657           91 EDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLT  170 (309)
Q Consensus        91 ~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~  170 (309)
                      +..|+.+.|+|+. ..+++++.|..|+||......  .......|..+|+.+..+| ++.||++++.|+++.+.|+++  
T Consensus       261 ~kki~~v~~~~~~-~~v~~aSad~~i~vws~~~~s--~~~~~~~h~~~V~~ls~h~-tgeYllsAs~d~~w~Fsd~~~--  334 (506)
T KOG0289|consen  261 TKKITSVKFHKDL-DTVITASADEIIRVWSVPLSS--EPTSSRPHEEPVTGLSLHP-TGEYLLSASNDGTWAFSDISS--  334 (506)
T ss_pred             ceEEEEEEeccch-hheeecCCcceEEeecccccc--Cccccccccccceeeeecc-CCcEEEEecCCceEEEEEccC--
Confidence            9999999999998 789999999999999987666  5666778999999999999 999999999999999999999  


Q ss_pred             CCCCCCceeeecc--CCCCeeEEEEecCCCcEEEEecCCCcEEEEeCCcccccccCCCCCcCCCCceeeeecCCCcceee
Q 021657          171 SNGVGSPINKFEG--HSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKVVD  248 (309)
Q Consensus       171 ~~~~~~~~~~~~~--~~~~v~~~~~~~~~~~l~~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~  248 (309)
                          +..+.....  ..-.+++.+|+|||- +|++|..|+.++|||+..               ...+..+.+|.++|..
T Consensus       335 ----g~~lt~vs~~~s~v~~ts~~fHpDgL-ifgtgt~d~~vkiwdlks---------------~~~~a~Fpght~~vk~  394 (506)
T KOG0289|consen  335 ----GSQLTVVSDETSDVEYTSAAFHPDGL-IFGTGTPDGVVKIWDLKS---------------QTNVAKFPGHTGPVKA  394 (506)
T ss_pred             ----CcEEEEEeeccccceeEEeeEcCCce-EEeccCCCceEEEEEcCC---------------ccccccCCCCCCceeE
Confidence                776665543  234589999999998 789999999999999998               3346678999999999


Q ss_pred             EEEccCCCeEEEEecCCCCCCCCCCeEEEEEccccccCChhhHhHhhhcc-cceEEEeeeC
Q 021657          249 FHWNASDPWTVVSVSDDCDSTGGGGTLQIWRMSDLIYRPQDEVLAELEKF-KAHVISCTSK  308 (309)
Q Consensus       249 ~~~~~~~~~~~~s~s~d~~s~~~dg~v~vw~~~~~~~~~~~~~~~~~~~h-~~~v~~~~~~  308 (309)
                      ++|+.+| |.++++.+|       +.|++||++.      .+..+++.-. ..+|.++.|.
T Consensus       395 i~FsENG-Y~Lat~add-------~~V~lwDLRK------l~n~kt~~l~~~~~v~s~~fD  441 (506)
T KOG0289|consen  395 ISFSENG-YWLATAADD-------GSVKLWDLRK------LKNFKTIQLDEKKEVNSLSFD  441 (506)
T ss_pred             EEeccCc-eEEEEEecC-------CeEEEEEehh------hcccceeeccccccceeEEEc
Confidence            9999965 556655555       8999999994      4444444321 1256666654

>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]

Probab=99.96  E-value=3.2e-30  Score=207.49  Aligned_cols=191  Identities=21%  Similarity=0.373  Sum_probs=167.3

Q ss_pred             CCcCcccccccccCCeEEEEEecCCCcEEEEEcCCCeEEEEEcCCCCcceEEEeeccCCceeEEEeccCCCCeEEEEcCC
Q 021657           79 PSVGPRGIYNGHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSAD  158 (309)
Q Consensus        79 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d  158 (309)
                      .....+..+.+|..+|.++.|++.. .+|++|+.+|+|++||++..+  .+..+.+|...+.++.|+| -+.+++.|+.|
T Consensus        58 ~kp~~i~S~~~hespIeSl~f~~~E-~LlaagsasgtiK~wDleeAk--~vrtLtgh~~~~~sv~f~P-~~~~~a~gStd  133 (825)
T KOG0267|consen   58 GKPNAITSLTGHESPIESLTFDTSE-RLLAAGSASGTIKVWDLEEAK--IVRTLTGHLLNITSVDFHP-YGEFFASGSTD  133 (825)
T ss_pred             cCCchhheeeccCCcceeeecCcch-hhhcccccCCceeeeehhhhh--hhhhhhccccCcceeeecc-ceEEecccccc
Confidence            3444555688999999999999987 889999999999999999888  7889999999999999999 89999999999


Q ss_pred             CcEEEEecCCCCCCCCCCceeeeccCCCCeeEEEEecCCCcEEEEecCCCcEEEEeCCcccccccCCCCCcCCCCceeee
Q 021657          159 NSVRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQ  238 (309)
Q Consensus       159 g~i~i~d~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~  238 (309)
                      ..+.+||++.      ..+...+.+|...+..+.|+|+|++ ++.|++|..++|||+..               ......
T Consensus       134 td~~iwD~Rk------~Gc~~~~~s~~~vv~~l~lsP~Gr~-v~~g~ed~tvki~d~~a---------------gk~~~e  191 (825)
T KOG0267|consen  134 TDLKIWDIRK------KGCSHTYKSHTRVVDVLRLSPDGRW-VASGGEDNTVKIWDLTA---------------GKLSKE  191 (825)
T ss_pred             ccceehhhhc------cCceeeecCCcceeEEEeecCCCce-eeccCCcceeeeecccc---------------cccccc
Confidence            9999999998      7889999999999999999999996 67999999999999987               455677


Q ss_pred             ecCCCcceeeEEEccCCCeEEEEecCCCCCCCCCCeEEEEEccccccCChhhHhHhhhcccceEEEeeeCC
Q 021657          239 HAGHRDKVVDFHWNASDPWTVVSVSDDCDSTGGGGTLQIWRMSDLIYRPQDEVLAELEKFKAHVISCTSKP  309 (309)
Q Consensus       239 ~~~~~~~v~~~~~~~~~~~~~~s~s~d~~s~~~dg~v~vw~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~P  309 (309)
                      +..|...+..+.|+|. .+|++       +||.|+++++||++      +.+.+...+.....|.+++|.|
T Consensus       192 f~~~e~~v~sle~hp~-e~Lla-------~Gs~d~tv~f~dle------tfe~I~s~~~~~~~v~~~~fn~  248 (825)
T KOG0267|consen  192 FKSHEGKVQSLEFHPL-EVLLA-------PGSSDRTVRFWDLE------TFEVISSGKPETDGVRSLAFNP  248 (825)
T ss_pred             cccccccccccccCch-hhhhc-------cCCCCceeeeeccc------eeEEeeccCCccCCceeeeecC
Confidence            8899999999999995 45666       66666999999999      5666666666678888888876

>KOG1274 consensus WD40 repeat protein [General function prediction only]

Probab=99.96  E-value=1.5e-27  Score=196.90  Aligned_cols=262  Identities=16%  Similarity=0.263  Sum_probs=197.8

Q ss_pred             CCCCCcceEEEEECCCCCEEEEecCCCcEEEEeCCccccccccCC-ccccccCCCCceeecCCCCCCCCcccCCCCCcCc
Q 021657            5 TGHQDNAEFALAMCPTEPYVLSGGKDKSVVLWSIQDHITSSATDP-ATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGP   83 (309)
Q Consensus         5 ~~H~~~~V~~~~~~~~~~~l~t~~~dg~i~vwd~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   83 (309)
                      -+|++ --+.++|.|+|++|.+++.||.|++|+............ ..............+..+..+..+.++....+..
T Consensus        10 yaht~-G~t~i~~d~~gefi~tcgsdg~ir~~~~~sd~e~P~ti~~~g~~v~~ia~~s~~f~~~s~~~tv~~y~fps~~~   88 (933)
T KOG1274|consen   10 YAHTG-GLTLICYDPDGEFICTCGSDGDIRKWKTNSDEEEPETIDISGELVSSIACYSNHFLTGSEQNTVLRYKFPSGEE   88 (933)
T ss_pred             hhccC-ceEEEEEcCCCCEEEEecCCCceEEeecCCcccCCchhhccCceeEEEeecccceEEeeccceEEEeeCCCCCc
Confidence            37888 479999999999999999999999999876522211111 1111111111111444556677777887777777


Q ss_pred             ccccccccCCeEEEEEecCCCcEEEEEcCCCeEEEEEcCCCCcceEEEeeccCCceeEEEeccCCCCeEEEEcCCCcEEE
Q 021657           84 RGIYNGHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRM  163 (309)
Q Consensus        84 ~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i  163 (309)
                      -..+...+-++.+++|+.+| .++|.|+.|-.|++-++....  ....+.+|..+|.++.|+| ++++||+.+.||.|++
T Consensus        89 ~~iL~Rftlp~r~~~v~g~g-~~iaagsdD~~vK~~~~~D~s--~~~~lrgh~apVl~l~~~p-~~~fLAvss~dG~v~i  164 (933)
T KOG1274|consen   89 DTILARFTLPIRDLAVSGSG-KMIAAGSDDTAVKLLNLDDSS--QEKVLRGHDAPVLQLSYDP-KGNFLAVSSCDGKVQI  164 (933)
T ss_pred             cceeeeeeccceEEEEecCC-cEEEeecCceeEEEEeccccc--hheeecccCCceeeeeEcC-CCCEEEEEecCceEEE
Confidence            76777778899999999998 889999999999999998877  6788899999999999999 9999999999999999


Q ss_pred             EecCCCCCCCCCCceeeeccC--------CCCeeEEEEecCCCcEEEEecCCCcEEEEeCCcccccccCCCCCcCCCCce
Q 021657          164 FDRRNLTSNGVGSPINKFEGH--------SAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGL  235 (309)
Q Consensus       164 ~d~~~~~~~~~~~~~~~~~~~--------~~~v~~~~~~~~~~~l~~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~  235 (309)
                      ||+.+      +....++.+.        ...+..++|+|++..+ +..+.|+.|++|+.......             .
T Consensus       165 w~~~~------~~~~~tl~~v~k~n~~~~s~i~~~~aW~Pk~g~l-a~~~~d~~Vkvy~r~~we~~-------------f  224 (933)
T KOG1274|consen  165 WDLQD------GILSKTLTGVDKDNEFILSRICTRLAWHPKGGTL-AVPPVDNTVKVYSRKGWELQ-------------F  224 (933)
T ss_pred             EEccc------chhhhhcccCCccccccccceeeeeeecCCCCeE-EeeccCCeEEEEccCCceeh-------------e
Confidence            99998      5555554321        3456789999998765 46677999999999883322             2


Q ss_pred             eeeecCCCcceeeEEEccCCCeEEEEecCCCCCCCCCCeEEEEEccccccCChhhHhHhhhcccceEEEeeeCC
Q 021657          236 FFQHAGHRDKVVDFHWNASDPWTVVSVSDDCDSTGGGGTLQIWRMSDLIYRPQDEVLAELEKFKAHVISCTSKP  309 (309)
Q Consensus       236 ~~~~~~~~~~v~~~~~~~~~~~~~~s~s~d~~s~~~dg~v~vw~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~P  309 (309)
                      ......+...+..+.|+|.|.||+        +++.||.|.|||..      +-    +.......|.+++|+|
T Consensus       225 ~Lr~~~~ss~~~~~~wsPnG~YiA--------As~~~g~I~vWnv~------t~----~~~~~~~~Vc~~aw~p  280 (933)
T KOG1274|consen  225 KLRDKLSSSKFSDLQWSPNGKYIA--------ASTLDGQILVWNVD------TH----ERHEFKRAVCCEAWKP  280 (933)
T ss_pred             eecccccccceEEEEEcCCCcEEe--------eeccCCcEEEEecc------cc----hhccccceeEEEecCC
Confidence            223334555699999999988766        66667999999999      31    1133457899999987

>KOG0283 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.96  E-value=5.1e-28  Score=198.11  Aligned_cols=206  Identities=20%  Similarity=0.321  Sum_probs=160.8

Q ss_pred             CcccCCCCCcceEEEEECCCCCEEEEecCCCcEEEEeCCccccccccCCccccccCCCCceeecCCCCCCCCcccCCCCC
Q 021657            1 MEILTGHQDNAEFALAMCPTEPYVLSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPS   80 (309)
Q Consensus         1 l~~l~~H~~~~V~~~~~~~~~~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (309)
                      ++.|.||.+ .|..|.||.++ +|++++.|++||+|++...                                       
T Consensus       362 ~~ef~GHt~-DILDlSWSKn~-fLLSSSMDKTVRLWh~~~~---------------------------------------  400 (712)
T KOG0283|consen  362 FCEFKGHTA-DILDLSWSKNN-FLLSSSMDKTVRLWHPGRK---------------------------------------  400 (712)
T ss_pred             hhhhhccch-hheecccccCC-eeEeccccccEEeecCCCc---------------------------------------
Confidence            357899999 89999999654 8999999999999999743                                       


Q ss_pred             cCcccccccccCCeEEEEEecCCCcEEEEEcCCCeEEEEEcCCCCcceEEEeeccCCceeEEEeccCCCCeEEEEcCCCc
Q 021657           81 VGPRGIYNGHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNS  160 (309)
Q Consensus        81 ~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~  160 (309)
                       .++.. ..|..-|+|++|+|-+.++|++|+-||.|+||++...+  +.... .-..-|++++|.| +|+..++|+.+|.
T Consensus       401 -~CL~~-F~HndfVTcVaFnPvDDryFiSGSLD~KvRiWsI~d~~--Vv~W~-Dl~~lITAvcy~P-dGk~avIGt~~G~  474 (712)
T KOG0283|consen  401 -ECLKV-FSHNDFVTCVAFNPVDDRYFISGSLDGKVRLWSISDKK--VVDWN-DLRDLITAVCYSP-DGKGAVIGTFNGY  474 (712)
T ss_pred             -ceeeE-EecCCeeEEEEecccCCCcEeecccccceEEeecCcCe--eEeeh-hhhhhheeEEecc-CCceEEEEEeccE
Confidence             23333 35999999999999988999999999999999998766  44443 4458899999999 8999999999999


Q ss_pred             EEEEecCCCCCCCCCCceeeecc--------CCCCeeEEEEecCCCcEEEEecCCCcEEEEeCCcccccccCCCCCcCCC
Q 021657          161 VRMFDRRNLTSNGVGSPINKFEG--------HSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYP  232 (309)
Q Consensus       161 i~i~d~~~~~~~~~~~~~~~~~~--------~~~~v~~~~~~~~~~~l~~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~  232 (309)
                      +++|+.+.      .+....+..        ....|+.+.|.|....-+.+.+.|..|+|||.+.               
T Consensus       475 C~fY~t~~------lk~~~~~~I~~~~~Kk~~~~rITG~Q~~p~~~~~vLVTSnDSrIRI~d~~~---------------  533 (712)
T KOG0283|consen  475 CRFYDTEG------LKLVSDFHIRLHNKKKKQGKRITGLQFFPGDPDEVLVTSNDSRIRIYDGRD---------------  533 (712)
T ss_pred             EEEEEccC------CeEEEeeeEeeccCccccCceeeeeEecCCCCCeEEEecCCCceEEEeccc---------------
Confidence            99999987      444444321        1237999999986554234677899999999976               


Q ss_pred             CceeeeecCCCc--ceeeEEEccCCCeEEEEecCCCCCCCCCCeEEEEEccc
Q 021657          233 AGLFFQHAGHRD--KVVDFHWNASDPWTVVSVSDDCDSTGGGGTLQIWRMSD  282 (309)
Q Consensus       233 ~~~~~~~~~~~~--~v~~~~~~~~~~~~~~s~s~d~~s~~~dg~v~vw~~~~  282 (309)
                      ..++..+.|+..  .-....|+.+|.+++        +++.|..|++|++..
T Consensus       534 ~~lv~KfKG~~n~~SQ~~Asfs~Dgk~IV--------s~seDs~VYiW~~~~  577 (712)
T KOG0283|consen  534 KDLVHKFKGFRNTSSQISASFSSDGKHIV--------SASEDSWVYIWKNDS  577 (712)
T ss_pred             hhhhhhhcccccCCcceeeeEccCCCEEE--------EeecCceEEEEeCCC
Confidence            334555555432  335678889888766        455559999999864

>KOG0270 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.96  E-value=8e-28  Score=183.48  Aligned_cols=210  Identities=21%  Similarity=0.399  Sum_probs=172.1

Q ss_pred             CCCCCcceEEEEECCC-CCEEEEecCCCcEEEEeCCccccccccCCccccccCCCCceeecCCCCCCCCcccCCCCCcCc
Q 021657            5 TGHQDNAEFALAMCPT-EPYVLSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGP   83 (309)
Q Consensus         5 ~~H~~~~V~~~~~~~~-~~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   83 (309)
                      .||++ +|..|+|+.. ...||+||.|.+|++||+.                                        ++++
T Consensus       240 ~gHTd-avl~Ls~n~~~~nVLaSgsaD~TV~lWD~~----------------------------------------~g~p  278 (463)
T KOG0270|consen  240 SGHTD-AVLALSWNRNFRNVLASGSADKTVKLWDVD----------------------------------------TGKP  278 (463)
T ss_pred             ccchH-HHHHHHhccccceeEEecCCCceEEEEEcC----------------------------------------CCCc
Confidence            57998 8999999885 4578999999999999998                                        4556


Q ss_pred             ccccccccCCeEEEEEecCCCcEEEEEcCCCeEEEEEcCCCCcceEEEeeccCCceeEEEeccCCCCeEEEEcCCCcEEE
Q 021657           84 RGIYNGHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRM  163 (309)
Q Consensus        84 ~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i  163 (309)
                      ...+..|.+.|.++.|+|..+..|++|+.|++|.+.|.+.... .-..+ ...+.|-.++|.|.....++++..||+++-
T Consensus       279 ~~s~~~~~k~Vq~l~wh~~~p~~LLsGs~D~~V~l~D~R~~~~-s~~~w-k~~g~VEkv~w~~~se~~f~~~tddG~v~~  356 (463)
T KOG0270|consen  279 KSSITHHGKKVQTLEWHPYEPSVLLSGSYDGTVALKDCRDPSN-SGKEW-KFDGEVEKVAWDPHSENSFFVSTDDGTVYY  356 (463)
T ss_pred             ceehhhcCCceeEEEecCCCceEEEeccccceEEeeeccCccc-cCceE-EeccceEEEEecCCCceeEEEecCCceEEe
Confidence            6677789999999999999889999999999999999985331 11111 235789999999988889999999999999


Q ss_pred             EecCCCCCCCCCCceeeeccCCCCeeEEEEecCCCcEEEEecCCCcEEEEeCCcccccccCCCCCcCCCCceeeeecCCC
Q 021657          164 FDRRNLTSNGVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHR  243 (309)
Q Consensus       164 ~d~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  243 (309)
                      +|+|++     ++++.+++.|..+|.+|++++.-+.++++++.|+.|++|++......             .+....-.-
T Consensus       357 ~D~R~~-----~~~vwt~~AHd~~ISgl~~n~~~p~~l~t~s~d~~Vklw~~~~~~~~-------------~v~~~~~~~  418 (463)
T KOG0270|consen  357 FDIRNP-----GKPVWTLKAHDDEISGLSVNIQTPGLLSTASTDKVVKLWKFDVDSPK-------------SVKEHSFKL  418 (463)
T ss_pred             eecCCC-----CCceeEEEeccCCcceEEecCCCCcceeeccccceEEEEeecCCCCc-------------ccccccccc
Confidence            999996     69999999999999999999999999999999999999999873321             111111122


Q ss_pred             cceeeEEEccCCCeEEEEecCCCCCCCCCCeEEEEEccc
Q 021657          244 DKVVDFHWNASDPWTVVSVSDDCDSTGGGGTLQIWRMSD  282 (309)
Q Consensus       244 ~~v~~~~~~~~~~~~~~s~s~d~~s~~~dg~v~vw~~~~  282 (309)
                      +...+.++.|+-.++++.++..       +.++|||+..
T Consensus       419 ~rl~c~~~~~~~a~~la~GG~k-------~~~~vwd~~~  450 (463)
T KOG0270|consen  419 GRLHCFALDPDVAFTLAFGGEK-------AVLRVWDIFT  450 (463)
T ss_pred             cceeecccCCCcceEEEecCcc-------ceEEEeeccc
Confidence            3467888999999888855544       8999999983

>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=99.96  E-value=1.1e-26  Score=169.58  Aligned_cols=248  Identities=15%  Similarity=0.290  Sum_probs=184.4

Q ss_pred             CCCCCcceEEEEECCCCCEEEEecCCCcEEEEeCCccccccccCCccccccCCCCceeecCCCCCCCCcccCCCCCcCcc
Q 021657            5 TGHQDNAEFALAMCPTEPYVLSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPR   84 (309)
Q Consensus         5 ~~H~~~~V~~~~~~~~~~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   84 (309)
                      .+|.+ -|+++.|++.|+++|||+.|++|+|||.++.                                    ..+....
T Consensus        10 s~h~D-lihdVs~D~~GRRmAtCSsDq~vkI~d~~~~------------------------------------s~~W~~T   52 (361)
T KOG2445|consen   10 SGHKD-LIHDVSFDFYGRRMATCSSDQTVKIWDSTSD------------------------------------SGTWSCT   52 (361)
T ss_pred             cCCcc-eeeeeeecccCceeeeccCCCcEEEEeccCC------------------------------------CCceEEe
Confidence            46887 9999999999999999999999999997542                                    1234455


Q ss_pred             cccccccCCeEEEEEe-cCCCcEEEEEcCCCeEEEEEcCC-------CCcceEEEeeccCCceeEEEeccC-CCCeEEEE
Q 021657           85 GIYNGHEDTVEDVTFC-PSSAQEFCSVGDDSCLILWDARV-------GTSPVIKVEKAHDADLHCVDWNPL-DDNLILTG  155 (309)
Q Consensus        85 ~~~~~~~~~v~~~~~~-~~~~~~l~s~~~dg~i~iwd~~~-------~~~~~~~~~~~~~~~v~~~~~~~~-~~~~l~~~  155 (309)
                      ...+.|.+.|..+.|. |.-++.+|+++.|+++.||.-..       .+......+......|+.++|.|. -|-.|+++
T Consensus        53 s~Wrah~~Si~rV~WAhPEfGqvvA~cS~Drtv~iWEE~~~~~~~~~~~Wv~~ttl~DsrssV~DV~FaP~hlGLklA~~  132 (361)
T KOG2445|consen   53 SSWRAHDGSIWRVVWAHPEFGQVVATCSYDRTVSIWEEQEKSEEAHGRRWVRRTTLVDSRSSVTDVKFAPKHLGLKLAAA  132 (361)
T ss_pred             eeEEecCCcEEEEEecCccccceEEEEecCCceeeeeecccccccccceeEEEEEeecCCcceeEEEecchhcceEEEEe
Confidence            6678899999999995 44448999999999999997521       123345667778889999999983 24589999


Q ss_pred             cCCCcEEEEecCCCCCCCCCCceeeec-------cCCCCeeEEEEecCC--CcEEEEecCC-----CcEEEEeCCccccc
Q 021657          156 SADNSVRMFDRRNLTSNGVGSPINKFE-------GHSAAVLCVQWSPDK--SSVFGSSAED-----GLLNIWDYEKVGKK  221 (309)
Q Consensus       156 ~~dg~i~i~d~~~~~~~~~~~~~~~~~-------~~~~~v~~~~~~~~~--~~l~~~~~~d-----g~i~iwd~~~~~~~  221 (309)
                      +.||.+|||+.-.+..........+++       .+..+..|+.|+|..  +.+||.|+.+     +.+.||.....+..
T Consensus       133 ~aDG~lRIYEA~dp~nLs~W~Lq~Ei~~~~~pp~~~~~~~~CvsWn~sr~~~p~iAvgs~e~a~~~~~~~Iye~~e~~rK  212 (361)
T KOG2445|consen  133 SADGILRIYEAPDPMNLSQWTLQHEIQNVIDPPGKNKQPCFCVSWNPSRMHEPLIAVGSDEDAPHLNKVKIYEYNENGRK  212 (361)
T ss_pred             ccCcEEEEEecCCccccccchhhhhhhhccCCcccccCcceEEeeccccccCceEEEEcccCCccccceEEEEecCCcce
Confidence            999999999877653322244444444       456678899999743  3367888866     58999998774432


Q ss_pred             ccCCCCCcCCCCceeeeecCCCcceeeEEEccCCC---eEEEEecCCCCCCCCCCeEEEEEccccc--------------
Q 021657          222 VEQGPRTTNYPAGLFFQHAGHRDKVVDFHWNASDP---WTVVSVSDDCDSTGGGGTLQIWRMSDLI--------------  284 (309)
Q Consensus       222 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~---~~~~s~s~d~~s~~~dg~v~vw~~~~~~--------------  284 (309)
                                 ...+.++.+|..+|++++|.|+-.   +++|+++.|       | |+||++....              
T Consensus       213 -----------w~kva~L~d~~dpI~di~wAPn~Gr~y~~lAvA~kD-------g-v~I~~v~~~~s~i~~ee~~~~~~~  273 (361)
T KOG2445|consen  213 -----------WLKVAELPDHTDPIRDISWAPNIGRSYHLLAVATKD-------G-VRIFKVKVARSAIEEEEVLAPDLM  273 (361)
T ss_pred             -----------eeeehhcCCCCCcceeeeeccccCCceeeEEEeecC-------c-EEEEEEeeccchhhhhcccCCCCc
Confidence                       234567779999999999999743   467755554       8 9999998421              


Q ss_pred             cCChhhHhHhhhcccceEEEeeeC
Q 021657          285 YRPQDEVLAELEKFKAHVISCTSK  308 (309)
Q Consensus       285 ~~~~~~~~~~~~~h~~~v~~~~~~  308 (309)
                      ..-.-+.+.++..|++.|+.+.|.
T Consensus       274 ~~l~v~~vs~~~~H~~~VWrv~wN  297 (361)
T KOG2445|consen  274 TDLPVEKVSELDDHNGEVWRVRWN  297 (361)
T ss_pred             cccceEEeeeccCCCCceEEEEEe
Confidence            011123456678999999999884

>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]

Probab=99.96  E-value=5.8e-28  Score=193.73  Aligned_cols=254  Identities=22%  Similarity=0.319  Sum_probs=195.9

Q ss_pred             cccCCCCCcceEEEEECCCCCEEEEecCCCcEEEEeCCccccccccCC---ccccccCC-C--CceeecCCCCCCCCccc
Q 021657            2 EILTGHQDNAEFALAMCPTEPYVLSGGKDKSVVLWSIQDHITSSATDP---ATAKSAGS-S--GSIIKQSPKPGDGNDKA   75 (309)
Q Consensus         2 ~~l~~H~~~~V~~~~~~~~~~~l~t~~~dg~i~vwd~~~~~~~~~~~~---~~~~~~~~-~--~~~~~~~~~~~~~~~~~   75 (309)
                      +.|.||.. -|..+++.+ +..++++|.||++++|+-...........   ........ .  ...-....+..+..+.+
T Consensus         8 ~~l~gH~~-DVr~v~~~~-~~~i~s~sRd~t~~vw~~~~~~~l~~~~~~~~~g~i~~~i~y~e~~~~~l~~g~~D~~i~v   85 (745)
T KOG0301|consen    8 HELEGHKS-DVRAVAVTD-GVCIISGSRDGTVKVWAKKGKQYLETHAFEGPKGFIANSICYAESDKGRLVVGGMDTTIIV   85 (745)
T ss_pred             EEeccCcc-chheeEecC-CeEEeecCCCCceeeeeccCcccccceecccCcceeeccceeccccCcceEeecccceEEE
Confidence            57899999 688888765 44899999999999999865533321111   11111100 0  11112334566788889


Q ss_pred             CCCCCcCcccccccccCCeEEEEEecCCCcEEEEEcCCCeEEEEEcCCCCcceEEEeeccCCceeEEEeccCCCCeEEEE
Q 021657           76 ADGPSVGPRGIYNGHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTG  155 (309)
Q Consensus        76 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~  155 (309)
                      +......+...+++|...|.++....++ . +++|+.|.++++|-...    ....+.+|...|+++..-| ++ .+++|
T Consensus        86 ~~~~~~~P~~~LkgH~snVC~ls~~~~~-~-~iSgSWD~TakvW~~~~----l~~~l~gH~asVWAv~~l~-e~-~~vTg  157 (745)
T KOG0301|consen   86 FKLSQAEPLYTLKGHKSNVCSLSIGEDG-T-LISGSWDSTAKVWRIGE----LVYSLQGHTASVWAVASLP-EN-TYVTG  157 (745)
T ss_pred             EecCCCCchhhhhccccceeeeecCCcC-c-eEecccccceEEecchh----hhcccCCcchheeeeeecC-CC-cEEec
Confidence            9999999999999999999999987776 4 99999999999997643    3455889999999999998 55 99999


Q ss_pred             cCCCcEEEEecCCCCCCCCCCceeeeccCCCCeeEEEEecCCCcEEEEecCCCcEEEEeCCcccccccCCCCCcCCCCce
Q 021657          156 SADNSVRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGL  235 (309)
Q Consensus       156 ~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~  235 (309)
                      +.|.+|++|.-        ++.+++|.+|...|+.+++-+++.  |++++.||.|++|++..                ..
T Consensus       158 saDKtIklWk~--------~~~l~tf~gHtD~VRgL~vl~~~~--flScsNDg~Ir~w~~~g----------------e~  211 (745)
T KOG0301|consen  158 SADKTIKLWKG--------GTLLKTFSGHTDCVRGLAVLDDSH--FLSCSNDGSIRLWDLDG----------------EV  211 (745)
T ss_pred             cCcceeeeccC--------CchhhhhccchhheeeeEEecCCC--eEeecCCceEEEEeccC----------------ce
Confidence            99999999975        457889999999999999999987  35999999999999953                57


Q ss_pred             eeeecCCCcceeeEEEccCCCeEEEEecCCCCCCCCCCeEEEEEccccccCChhhHhHhhhcccceEEEeee
Q 021657          236 FFQHAGHRDKVVDFHWNASDPWTVVSVSDDCDSTGGGGTLQIWRMSDLIYRPQDEVLAELEKFKAHVISCTS  307 (309)
Q Consensus       236 ~~~~~~~~~~v~~~~~~~~~~~~~~s~s~d~~s~~~dg~v~vw~~~~~~~~~~~~~~~~~~~h~~~v~~~~~  307 (309)
                      +.++.+|+..|++++..++++ +++       |+|.|++++||+..        ++.+.+.-..-.||++.+
T Consensus       212 l~~~~ghtn~vYsis~~~~~~-~Iv-------s~gEDrtlriW~~~--------e~~q~I~lPttsiWsa~~  267 (745)
T KOG0301|consen  212 LLEMHGHTNFVYSISMALSDG-LIV-------STGEDRTLRIWKKD--------ECVQVITLPTTSIWSAKV  267 (745)
T ss_pred             eeeeeccceEEEEEEecCCCC-eEE-------EecCCceEEEeecC--------ceEEEEecCccceEEEEE
Confidence            788999999999999777666 455       55555999999986        455555533346777654

>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=99.96  E-value=2.3e-28  Score=194.74  Aligned_cols=211  Identities=19%  Similarity=0.341  Sum_probs=183.6

Q ss_pred             cccCCCCCcceEEEEECCCCCEEEEecCCCcEEEEeCCccccccccCCccccccCCCCceeecCCCCCCCCcccCCCCCc
Q 021657            2 EILTGHQDNAEFALAMCPTEPYVLSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSV   81 (309)
Q Consensus         2 ~~l~~H~~~~V~~~~~~~~~~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (309)
                      ..++.|.+ -|..+...-+++.|+++|.|-+|++|+.....                                      .
T Consensus        67 asme~HsD-WVNDiiL~~~~~tlIS~SsDtTVK~W~~~~~~--------------------------------------~  107 (735)
T KOG0308|consen   67 ASMEHHSD-WVNDIILCGNGKTLISASSDTTVKVWNAHKDN--------------------------------------T  107 (735)
T ss_pred             hhhhhhHh-HHhhHHhhcCCCceEEecCCceEEEeecccCc--------------------------------------c
Confidence            46778888 89999999999999999999999999987431                                      1


Q ss_pred             CcccccccccCCeEEEEE-ecCCCcEEEEEcCCCeEEEEEcCCCCc--------ceEEEee-ccCCceeEEEeccCCCCe
Q 021657           82 GPRGIYNGHEDTVEDVTF-CPSSAQEFCSVGDDSCLILWDARVGTS--------PVIKVEK-AHDADLHCVDWNPLDDNL  151 (309)
Q Consensus        82 ~~~~~~~~~~~~v~~~~~-~~~~~~~l~s~~~dg~i~iwd~~~~~~--------~~~~~~~-~~~~~v~~~~~~~~~~~~  151 (309)
                      -+...+..|...|.|+++ .++. .++|+||-|+.|.+||++++..        .....+. ++..+|++++.++ ++..
T Consensus       108 ~c~stir~H~DYVkcla~~ak~~-~lvaSgGLD~~IflWDin~~~~~l~~s~n~~t~~sl~sG~k~siYSLA~N~-t~t~  185 (735)
T KOG0308|consen  108 FCMSTIRTHKDYVKCLAYIAKNN-ELVASGGLDRKIFLWDINTGTATLVASFNNVTVNSLGSGPKDSIYSLAMNQ-TGTI  185 (735)
T ss_pred             hhHhhhhcccchheeeeecccCc-eeEEecCCCccEEEEEccCcchhhhhhccccccccCCCCCccceeeeecCC-cceE
Confidence            345677889999999999 5555 8899999999999999997632        1122233 7889999999999 8999


Q ss_pred             EEEEcCCCcEEEEecCCCCCCCCCCceeeeccCCCCeeEEEEecCCCcEEEEecCCCcEEEEeCCcccccccCCCCCcCC
Q 021657          152 ILTGSADNSVRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNY  231 (309)
Q Consensus       152 l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~  231 (309)
                      +++|+..+.+++||.++      .+.+..+.+|...|..+..++||..++ +++.||+|++||+..              
T Consensus       186 ivsGgtek~lr~wDprt------~~kimkLrGHTdNVr~ll~~dDGt~~l-s~sSDgtIrlWdLgq--------------  244 (735)
T KOG0308|consen  186 IVSGGTEKDLRLWDPRT------CKKIMKLRGHTDNVRVLLVNDDGTRLL-SASSDGTIRLWDLGQ--------------  244 (735)
T ss_pred             EEecCcccceEEecccc------ccceeeeeccccceEEEEEcCCCCeEe-ecCCCceEEeeeccc--------------
Confidence            99999999999999999      889999999999999999999999865 999999999999997              


Q ss_pred             CCceeeeecCCCcceeeEEEccCCCeEEEEecCCCCCCCCCCeEEEEEcccc
Q 021657          232 PAGLFFQHAGHRDKVVDFHWNASDPWTVVSVSDDCDSTGGGGTLQIWRMSDL  283 (309)
Q Consensus       232 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~s~d~~s~~~dg~v~vw~~~~~  283 (309)
                       ..++.++..|...|+++..+|+-..++        +|+.||.|..=|++++
T Consensus       245 -QrCl~T~~vH~e~VWaL~~~~sf~~vY--------sG~rd~~i~~Tdl~n~  287 (735)
T KOG0308|consen  245 -QRCLATYIVHKEGVWALQSSPSFTHVY--------SGGRDGNIYRTDLRNP  287 (735)
T ss_pred             -cceeeeEEeccCceEEEeeCCCcceEE--------ecCCCCcEEecccCCc
Confidence             678888999999999999999888877        8888899999999864

>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=99.96  E-value=1e-27  Score=191.12  Aligned_cols=254  Identities=19%  Similarity=0.310  Sum_probs=204.0

Q ss_pred             EEECCCCCEEEEecCCCcEEEEeCCccccccccC--CccccccCCCCceeecCCCCCCCCcccCCCCCcCccccccc-cc
Q 021657           15 LAMCPTEPYVLSGGKDKSVVLWSIQDHITSSATD--PATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNG-HE   91 (309)
Q Consensus        15 ~~~~~~~~~l~t~~~dg~i~vwd~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~   91 (309)
                      ++|+ ..+.|+.|. ...|.+|+-.++....-..  ........-......++.+...+.+.+||..+.+.+..+.+ |.
T Consensus       183 ldWs-s~n~laVal-g~~vylW~~~s~~v~~l~~~~~~~vtSv~ws~~G~~LavG~~~g~v~iwD~~~~k~~~~~~~~h~  260 (484)
T KOG0305|consen  183 LDWS-SANVLAVAL-GQSVYLWSASSGSVTELCSFGEELVTSVKWSPDGSHLAVGTSDGTVQIWDVKEQKKTRTLRGSHA  260 (484)
T ss_pred             hhcc-cCCeEEEEe-cceEEEEecCCCceEEeEecCCCceEEEEECCCCCEEEEeecCCeEEEEehhhccccccccCCcC
Confidence            4666 344566654 4589999988774222111  12222222333344556677899999999999999999998 99


Q ss_pred             CCeEEEEEecCCCcEEEEEcCCCeEEEEEcCCCCcceEEEeeccCCceeEEEeccCCCCeEEEEcCCCcEEEEecCCCCC
Q 021657           92 DTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTS  171 (309)
Q Consensus        92 ~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~  171 (309)
                      ..|-+++|+.   ..+.+|+.|+.|..+|++..+.... .+.+|...|..+.|++ ++.++|+|+.|+.+.|||...   
T Consensus       261 ~rvg~laW~~---~~lssGsr~~~I~~~dvR~~~~~~~-~~~~H~qeVCgLkws~-d~~~lASGgnDN~~~Iwd~~~---  332 (484)
T KOG0305|consen  261 SRVGSLAWNS---SVLSSGSRDGKILNHDVRISQHVVS-TLQGHRQEVCGLKWSP-DGNQLASGGNDNVVFIWDGLS---  332 (484)
T ss_pred             ceeEEEeccC---ceEEEecCCCcEEEEEEecchhhhh-hhhcccceeeeeEECC-CCCeeccCCCccceEeccCCC---
Confidence            9999999983   6799999999999999998774333 5889999999999999 999999999999999999977   


Q ss_pred             CCCCCceeeeccCCCCeeEEEEecCCCcEEEEec--CCCcEEEEeCCcccccccCCCCCcCCCCceeeeecCCCcceeeE
Q 021657          172 NGVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSA--EDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKVVDF  249 (309)
Q Consensus       172 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~--~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~  249 (309)
                         ..++..+..|...|.+++|+|-...|||+|+  .|++|++||... +.              .+.. ......|..|
T Consensus       333 ---~~p~~~~~~H~aAVKA~awcP~q~~lLAsGGGs~D~~i~fwn~~~-g~--------------~i~~-vdtgsQVcsL  393 (484)
T KOG0305|consen  333 ---PEPKFTFTEHTAAVKALAWCPWQSGLLATGGGSADRCIKFWNTNT-GA--------------RIDS-VDTGSQVCSL  393 (484)
T ss_pred             ---ccccEEEeccceeeeEeeeCCCccCceEEcCCCcccEEEEEEcCC-Cc--------------Eecc-cccCCceeeE
Confidence               7889999999999999999998888999875  689999999997 22              2222 2345679999


Q ss_pred             EEccCCCeEEEEecCCCCCCCCCCeEEEEEccccccCChhhHhHhhhcccceEEEeeeCC
Q 021657          250 HWNASDPWTVVSVSDDCDSTGGGGTLQIWRMSDLIYRPQDEVLAELEKFKAHVISCTSKP  309 (309)
Q Consensus       250 ~~~~~~~~~~~s~s~d~~s~~~dg~v~vw~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~P  309 (309)
                      .|++....++.+.+      -.++.|.||++.      +.+++..+.+|...|..++++|
T Consensus       394 ~Wsk~~kEi~sthG------~s~n~i~lw~~p------s~~~~~~l~gH~~RVl~la~SP  441 (484)
T KOG0305|consen  394 IWSKKYKELLSTHG------YSENQITLWKYP------SMKLVAELLGHTSRVLYLALSP  441 (484)
T ss_pred             EEcCCCCEEEEecC------CCCCcEEEEecc------ccceeeeecCCcceeEEEEECC
Confidence            99999888887644      456899999999      7888999999999999999998

>KOG1407 consensus WD40 repeat protein [Function unknown]

Probab=99.96  E-value=5.4e-27  Score=167.49  Aligned_cols=248  Identities=18%  Similarity=0.258  Sum_probs=184.3

Q ss_pred             ccCCCCCcceEEEEECC-CCCEEEEecCCCcEEEEeCCccccccccCCccc---cccCCCCceeecCCCCCCCCcccCCC
Q 021657            3 ILTGHQDNAEFALAMCP-TEPYVLSGGKDKSVVLWSIQDHITSSATDPATA---KSAGSSGSIIKQSPKPGDGNDKAADG   78 (309)
Q Consensus         3 ~l~~H~~~~V~~~~~~~-~~~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~   78 (309)
                      ..+||.+ .|-.++|+| ...+|++++.|.+|++||++...+.........   .......  ..+..+..+..+...+.
T Consensus        59 ~~~gh~~-svdql~w~~~~~d~~atas~dk~ir~wd~r~~k~~~~i~~~~eni~i~wsp~g--~~~~~~~kdD~it~id~  135 (313)
T KOG1407|consen   59 VYRGHTD-SVDQLCWDPKHPDLFATASGDKTIRIWDIRSGKCTARIETKGENINITWSPDG--EYIAVGNKDDRITFIDA  135 (313)
T ss_pred             cccCCCc-chhhheeCCCCCcceEEecCCceEEEEEeccCcEEEEeeccCcceEEEEcCCC--CEEEEecCcccEEEEEe
Confidence            4678998 677889988 567899999999999999998754443322110   0111111  12222344555666666


Q ss_pred             CCcCcccccccccCCeEEEEEecCCCcEEEEEcCCCeEEEEEcCCCCcceEEEeeccCCceeEEEeccCCCCeEEEEcCC
Q 021657           79 PSVGPRGIYNGHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSAD  158 (309)
Q Consensus        79 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d  158 (309)
                      ++.+.....+ ..-.+..++|+.++ .+|+.....|+|.|.....-+  .+..+++|.....|+.|+| +|++||+|+.|
T Consensus       136 r~~~~~~~~~-~~~e~ne~~w~~~n-d~Fflt~GlG~v~ILsypsLk--pv~si~AH~snCicI~f~p-~GryfA~GsAD  210 (313)
T KOG1407|consen  136 RTYKIVNEEQ-FKFEVNEISWNNSN-DLFFLTNGLGCVEILSYPSLK--PVQSIKAHPSNCICIEFDP-DGRYFATGSAD  210 (313)
T ss_pred             cccceeehhc-ccceeeeeeecCCC-CEEEEecCCceEEEEeccccc--cccccccCCcceEEEEECC-CCceEeecccc
Confidence            6665554433 34567888998766 666666777999999987666  7889999999999999999 99999999999


Q ss_pred             CcEEEEecCCCCCCCCCCceeeeccCCCCeeEEEEecCCCcEEEEecCCCcEEEEeCCcccccccCCCCCcCCCCceeee
Q 021657          159 NSVRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQ  238 (309)
Q Consensus       159 g~i~i~d~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~  238 (309)
                      ..+.+||+..      .-+++.+..+.-+|+.++|+.+|++ ||+|++|..|-|=++.+.               ..+..
T Consensus       211 AlvSLWD~~E------LiC~R~isRldwpVRTlSFS~dg~~-lASaSEDh~IDIA~vetG---------------d~~~e  268 (313)
T KOG1407|consen  211 ALVSLWDVDE------LICERCISRLDWPVRTLSFSHDGRM-LASASEDHFIDIAEVETG---------------DRVWE  268 (313)
T ss_pred             ceeeccChhH------hhhheeeccccCceEEEEeccCcce-eeccCccceEEeEecccC---------------CeEEE
Confidence            9999999998      7888899999999999999999995 789999999999888872               22333


Q ss_pred             ecCCCcceeeEEEccCCCeEEEEecCCCC-CCCCCCeEEEEEcc
Q 021657          239 HAGHRDKVVDFHWNASDPWTVVSVSDDCD-STGGGGTLQIWRMS  281 (309)
Q Consensus       239 ~~~~~~~v~~~~~~~~~~~~~~s~s~d~~-s~~~dg~v~vw~~~  281 (309)
                      . .+.++...++|+|....|+.++++.-. +.-..|.+++|-+.
T Consensus       269 I-~~~~~t~tVAWHPk~~LLAyA~ddk~~d~~reag~vKiFG~~  311 (313)
T KOG1407|consen  269 I-PCEGPTFTVAWHPKRPLLAYACDDKDGDSNREAGTVKIFGLS  311 (313)
T ss_pred             e-eccCCceeEEecCCCceeeEEecCCCCccccccceeEEecCC
Confidence            3 367789999999987766666654300 22234788888765

>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=99.96  E-value=2.1e-27  Score=167.23  Aligned_cols=195  Identities=19%  Similarity=0.309  Sum_probs=171.2

Q ss_pred             CCCCCCCcccCCCCCcCcccccccccCCeEEEEEecCCCcEEEEEcCCCeEEEEEcCCCCcceEEEeeccCCceeEEEec
Q 021657           66 PKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWN  145 (309)
Q Consensus        66 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~  145 (309)
                      +...+..+++|+...+..++++.+|...|.+++.+.++ ..|++|+.|..+.+||+++++  ....+.+|...|+.++|+
T Consensus        34 tcGsdrtvrLWNp~rg~liktYsghG~EVlD~~~s~Dn-skf~s~GgDk~v~vwDV~TGk--v~Rr~rgH~aqVNtV~fN  110 (307)
T KOG0316|consen   34 TCGSDRTVRLWNPLRGALIKTYSGHGHEVLDAALSSDN-SKFASCGGDKAVQVWDVNTGK--VDRRFRGHLAQVNTVRFN  110 (307)
T ss_pred             EcCCCceEEeecccccceeeeecCCCceeeeccccccc-cccccCCCCceEEEEEcccCe--eeeecccccceeeEEEec
Confidence            34567889999999999999999999999999999988 779999999999999999999  889999999999999999


Q ss_pred             cCCCCeEEEEcCCCcEEEEecCCCCCCCCCCceeeeccCCCCeeEEEEecCCCcEEEEecCCCcEEEEeCCcccccccCC
Q 021657          146 PLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQG  225 (309)
Q Consensus       146 ~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~dg~i~iwd~~~~~~~~~~~  225 (309)
                      . +...+++|+.|..+++||.|...    .+|++.+......|.++..+..   .+++|+.||+++.||++.        
T Consensus       111 e-esSVv~SgsfD~s~r~wDCRS~s----~ePiQildea~D~V~Si~v~~h---eIvaGS~DGtvRtydiR~--------  174 (307)
T KOG0316|consen  111 E-ESSVVASGSFDSSVRLWDCRSRS----FEPIQILDEAKDGVSSIDVAEH---EIVAGSVDGTVRTYDIRK--------  174 (307)
T ss_pred             C-cceEEEeccccceeEEEEcccCC----CCccchhhhhcCceeEEEeccc---EEEeeccCCcEEEEEeec--------
Confidence            9 99999999999999999999865    7889999888889999988754   467999999999999998        


Q ss_pred             CCCcCCCCceeeeecCCCcceeeEEEccCCCeEEEEecCCCCCCCCCCeEEEEEccccccCChhhHhHhhhcccceE
Q 021657          226 PRTTNYPAGLFFQHAGHRDKVVDFHWNASDPWTVVSVSDDCDSTGGGGTLQIWRMSDLIYRPQDEVLAELEKFKAHV  302 (309)
Q Consensus       226 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~s~d~~s~~~dg~v~vw~~~~~~~~~~~~~~~~~~~h~~~v  302 (309)
                             .++....  -..+|+++.|+++++..+        .++.|+++++-|-.      +++.++.+++|+..=
T Consensus       175 -------G~l~sDy--~g~pit~vs~s~d~nc~L--------a~~l~stlrLlDk~------tGklL~sYkGhkn~e  228 (307)
T KOG0316|consen  175 -------GTLSSDY--FGHPITSVSFSKDGNCSL--------ASSLDSTLRLLDKE------TGKLLKSYKGHKNME  228 (307)
T ss_pred             -------ceeehhh--cCCcceeEEecCCCCEEE--------Eeeccceeeecccc------hhHHHHHhcccccce
Confidence                   2233223  345899999999999877        44555999999999      899999999998643

>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]

Probab=99.96  E-value=5e-28  Score=178.34  Aligned_cols=240  Identities=18%  Similarity=0.261  Sum_probs=193.2

Q ss_pred             CCCcceEEEEECCCCCEEEEecCCCcEEEEeCCccccccccCCcccc---ccCCCCceeecCCCCCCCCcccCCCCCcCc
Q 021657            7 HQDNAEFALAMCPTEPYVLSGGKDKSVVLWSIQDHITSSATDPATAK---SAGSSGSIIKQSPKPGDGNDKAADGPSVGP   83 (309)
Q Consensus         7 H~~~~V~~~~~~~~~~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   83 (309)
                      |.+ +|.|++|+.|...||+|+.||.|+||.++++.+...+......   +.........+..+..+..+++....+++.
T Consensus       262 md~-aVlci~FSRDsEMlAsGsqDGkIKvWri~tG~ClRrFdrAHtkGvt~l~FSrD~SqiLS~sfD~tvRiHGlKSGK~  340 (508)
T KOG0275|consen  262 MDD-AVLCISFSRDSEMLASGSQDGKIKVWRIETGQCLRRFDRAHTKGVTCLSFSRDNSQILSASFDQTVRIHGLKSGKC  340 (508)
T ss_pred             ccc-ceEEEeecccHHHhhccCcCCcEEEEEEecchHHHHhhhhhccCeeEEEEccCcchhhcccccceEEEeccccchh
Confidence            566 8999999999999999999999999999999777666543222   222222233344556778889999999999


Q ss_pred             ccccccccCCeEEEEEecCCCcEEEEEcCCCeEEEEEcCCCCcceEEEeeccCCceeEEEeccCCCCeEEEEcCCCcEEE
Q 021657           84 RGIYNGHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRM  163 (309)
Q Consensus        84 ~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i  163 (309)
                      ++.+++|..-|+...|.++| +.+++++.||+|++|+..+.+........+...+|.++-.-|.+...++++...+++++
T Consensus       341 LKEfrGHsSyvn~a~ft~dG-~~iisaSsDgtvkvW~~KtteC~~Tfk~~~~d~~vnsv~~~PKnpeh~iVCNrsntv~i  419 (508)
T KOG0275|consen  341 LKEFRGHSSYVNEATFTDDG-HHIISASSDGTVKVWHGKTTECLSTFKPLGTDYPVNSVILLPKNPEHFIVCNRSNTVYI  419 (508)
T ss_pred             HHHhcCccccccceEEcCCC-CeEEEecCCccEEEecCcchhhhhhccCCCCcccceeEEEcCCCCceEEEEcCCCeEEE
Confidence            99999999999999999999 88999999999999999888732222333456689999988888899999999999999


Q ss_pred             EecCCCCCCCCCCceeeeccC---CCCeeEEEEecCCCcEEEEecCCCcEEEEeCCcccccccCCCCCcCCCCceeeeec
Q 021657          164 FDRRNLTSNGVGSPINKFEGH---SAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHA  240 (309)
Q Consensus       164 ~d~~~~~~~~~~~~~~~~~~~---~~~v~~~~~~~~~~~l~~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~  240 (309)
                      .++.       ++.++.+...   .+...+.+.+|.|.+++ +.++|+.++.|.+..               ..+-..+.
T Consensus       420 mn~q-------GQvVrsfsSGkREgGdFi~~~lSpkGewiY-cigED~vlYCF~~~s---------------G~LE~tl~  476 (508)
T KOG0275|consen  420 MNMQ-------GQVVRSFSSGKREGGDFINAILSPKGEWIY-CIGEDGVLYCFSVLS---------------GKLERTLP  476 (508)
T ss_pred             Eecc-------ceEEeeeccCCccCCceEEEEecCCCcEEE-EEccCcEEEEEEeec---------------Cceeeeee
Confidence            9987       6788888543   34556678999999865 778899999999887               44556678


Q ss_pred             CCCcceeeEEEccCCCeEEEEecCCCCCCCCCCeEEEEE
Q 021657          241 GHRDKVVDFHWNASDPWTVVSVSDDCDSTGGGGTLQIWR  279 (309)
Q Consensus       241 ~~~~~v~~~~~~~~~~~~~~s~s~d~~s~~~dg~v~vw~  279 (309)
                      .|...+..++-+|.. .++++-|+|       |.+++|.
T Consensus       477 VhEkdvIGl~HHPHq-NllAsYsED-------gllKLWk  507 (508)
T KOG0275|consen  477 VHEKDVIGLTHHPHQ-NLLASYSED-------GLLKLWK  507 (508)
T ss_pred             cccccccccccCccc-chhhhhccc-------chhhhcC
Confidence            899999999999965 467766666       9999995

>KOG0270 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.96  E-value=2.3e-27  Score=180.97  Aligned_cols=214  Identities=20%  Similarity=0.371  Sum_probs=165.7

Q ss_pred             CCEEEEecCCCcEEEEeCCccccccccCCccccccCCCCceeecCCCCCCCCcccCCCCCcCcccccccccCCeEEEEEe
Q 021657           21 EPYVLSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFC  100 (309)
Q Consensus        21 ~~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~  100 (309)
                      |+++|.|..|..|.|||+.-.......                +..+......   .....+.-....+|+..|.++.|+
T Consensus       192 gNyvAiGtmdp~IeIWDLDI~d~v~P~----------------~~LGs~~sk~---~~k~~k~~~~~~gHTdavl~Ls~n  252 (463)
T KOG0270|consen  192 GNYVAIGTMDPEIEIWDLDIVDAVLPC----------------VTLGSKASKK---KKKKGKRSNSASGHTDAVLALSWN  252 (463)
T ss_pred             cceEEEeccCceeEEeccccccccccc----------------eeechhhhhh---hhhhcccccccccchHHHHHHHhc
Confidence            679999999999999998732110000                0000000000   000011112234799999999999


Q ss_pred             cCCCcEEEEEcCCCeEEEEEcCCCCcceEEEeeccCCceeEEEeccCCCCeEEEEcCCCcEEEEecCCCCCCCCCCceee
Q 021657          101 PSSAQEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINK  180 (309)
Q Consensus       101 ~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~  180 (309)
                      ..-.+.||+||.|.+|++||+.+++  +..++..|...|.+++|+|..+.+|++|+.|+++.+.|.|.+.     ..-..
T Consensus       253 ~~~~nVLaSgsaD~TV~lWD~~~g~--p~~s~~~~~k~Vq~l~wh~~~p~~LLsGs~D~~V~l~D~R~~~-----~s~~~  325 (463)
T KOG0270|consen  253 RNFRNVLASGSADKTVKLWDVDTGK--PKSSITHHGKKVQTLEWHPYEPSVLLSGSYDGTVALKDCRDPS-----NSGKE  325 (463)
T ss_pred             cccceeEEecCCCceEEEEEcCCCC--cceehhhcCCceeEEEecCCCceEEEeccccceEEeeeccCcc-----ccCce
Confidence            8877899999999999999999999  6778888999999999999889999999999999999999632     22222


Q ss_pred             eccCCCCeeEEEEecCCCcEEEEecCCCcEEEEeCCcccccccCCCCCcCCCCceeeeecCCCcceeeEEEccCCCeEEE
Q 021657          181 FEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKVVDFHWNASDPWTVV  260 (309)
Q Consensus       181 ~~~~~~~v~~~~~~~~~~~l~~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~  260 (309)
                      ++ ..+.|..++|.|...+.+.++..||+++-+|+|..+              .+++++..|.++|.++.+++..+.+++
T Consensus       326 wk-~~g~VEkv~w~~~se~~f~~~tddG~v~~~D~R~~~--------------~~vwt~~AHd~~ISgl~~n~~~p~~l~  390 (463)
T KOG0270|consen  326 WK-FDGEVEKVAWDPHSENSFFVSTDDGTVYYFDIRNPG--------------KPVWTLKAHDDEISGLSVNIQTPGLLS  390 (463)
T ss_pred             EE-eccceEEEEecCCCceeEEEecCCceEEeeecCCCC--------------CceeEEEeccCCcceEEecCCCCccee
Confidence            32 356899999999999888899999999999999844              467889999999999999999999998


Q ss_pred             EecCCCCCCCCCCeEEEEEccc
Q 021657          261 SVSDDCDSTGGGGTLQIWRMSD  282 (309)
Q Consensus       261 s~s~d~~s~~~dg~v~vw~~~~  282 (309)
                      ++|.|       +.|++|++..
T Consensus       391 t~s~d-------~~Vklw~~~~  405 (463)
T KOG0270|consen  391 TASTD-------KVVKLWKFDV  405 (463)
T ss_pred             ecccc-------ceEEEEeecC
Confidence            55554       9999999985

>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]

Probab=99.96  E-value=2.9e-27  Score=173.10  Aligned_cols=233  Identities=18%  Similarity=0.329  Sum_probs=176.7

Q ss_pred             CcccCCCCCcceEEEEECCCCCEEEEecCCCcEEEEeCCccccccccCCccccccCCCCceeecCCCCCCCCcccCCCCC
Q 021657            1 MEILTGHQDNAEFALAMCPTEPYVLSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPS   80 (309)
Q Consensus         1 l~~l~~H~~~~V~~~~~~~~~~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (309)
                      +++|-.|.+ +|+++.|+|....|++|+.|++|++||+......                                    
T Consensus       165 IRTlYDH~d-evn~l~FHPre~ILiS~srD~tvKlFDfsK~saK------------------------------------  207 (430)
T KOG0640|consen  165 IRTLYDHVD-EVNDLDFHPRETILISGSRDNTVKLFDFSKTSAK------------------------------------  207 (430)
T ss_pred             EeehhhccC-cccceeecchhheEEeccCCCeEEEEecccHHHH------------------------------------
Confidence            478888999 8999999999999999999999999999753111                                    


Q ss_pred             cCcccccccccCCeEEEEEecCCCcEEEEEcCCCeEEEEEcCCCCcce-EEEeeccCCceeEEEeccCCCCeEEEEcCCC
Q 021657           81 VGPRGIYNGHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPV-IKVEKAHDADLHCVDWNPLDDNLILTGSADN  159 (309)
Q Consensus        81 ~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~-~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg  159 (309)
                       +..+.+ ....+|.++.|+|.| .+|+.|....++++||+++.+.-. ......|.+.|+++.+++ ++++.++++.||
T Consensus       208 -rA~K~~-qd~~~vrsiSfHPsG-efllvgTdHp~~rlYdv~T~QcfvsanPd~qht~ai~~V~Ys~-t~~lYvTaSkDG  283 (430)
T KOG0640|consen  208 -RAFKVF-QDTEPVRSISFHPSG-EFLLVGTDHPTLRLYDVNTYQCFVSANPDDQHTGAITQVRYSS-TGSLYVTASKDG  283 (430)
T ss_pred             -HHHHHh-hccceeeeEeecCCC-ceEEEecCCCceeEEeccceeEeeecCcccccccceeEEEecC-CccEEEEeccCC
Confidence             111222 245689999999999 889999999999999999876211 112356889999999999 999999999999


Q ss_pred             cEEEEecCCCCCCCCCCceeeec-cC-CCCeeEEEEecCCCcEEEEecCCCcEEEEeCCcccccccCCCCCcCCCCceee
Q 021657          160 SVRMFDRRNLTSNGVGSPINKFE-GH-SAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFF  237 (309)
Q Consensus       160 ~i~i~d~~~~~~~~~~~~~~~~~-~~-~~~v~~~~~~~~~~~l~~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~  237 (309)
                      .|++||--.      .+++.++. .| ...|.+..|..+++++| +.+.|..+++|.+.+.               .++.
T Consensus       284 ~IklwDGVS------~rCv~t~~~AH~gsevcSa~Ftkn~kyiL-sSG~DS~vkLWEi~t~---------------R~l~  341 (430)
T KOG0640|consen  284 AIKLWDGVS------NRCVRTIGNAHGGSEVCSAVFTKNGKYIL-SSGKDSTVKLWEISTG---------------RMLK  341 (430)
T ss_pred             cEEeecccc------HHHHHHHHhhcCCceeeeEEEccCCeEEe-ecCCcceeeeeeecCC---------------ceEE
Confidence            999999888      88888885 34 45699999999999876 8889999999999982               2333


Q ss_pred             eecCC-----CcceeeEEEccCCCeEEEEecCCCCCCCCCCeEEEEEccccccCChhhHhHhh-hcccceEEEeeeCC
Q 021657          238 QHAGH-----RDKVVDFHWNASDPWTVVSVSDDCDSTGGGGTLQIWRMSDLIYRPQDEVLAEL-EKFKAHVISCTSKP  309 (309)
Q Consensus       238 ~~~~~-----~~~v~~~~~~~~~~~~~~s~s~d~~s~~~dg~v~vw~~~~~~~~~~~~~~~~~-~~h~~~v~~~~~~P  309 (309)
                      .+.|-     ...-+...|+.+..+++.---       ..+.+.-||.+      +...+.-+ .+|.+.+..+.-+|
T Consensus       342 ~YtGAg~tgrq~~rtqAvFNhtEdyVl~pDE-------as~slcsWdaR------tadr~~l~slgHn~a~R~i~HSP  406 (430)
T KOG0640|consen  342 EYTGAGTTGRQKHRTQAVFNHTEDYVLFPDE-------ASNSLCSWDAR------TADRVALLSLGHNGAVRWIVHSP  406 (430)
T ss_pred             EEecCCcccchhhhhhhhhcCccceEEcccc-------ccCceeecccc------chhhhhhcccCCCCCceEEEeCC
Confidence            33222     112244556666666553211       12789999998      44444333 47999999888776

>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]

Probab=99.95  E-value=1.9e-26  Score=174.53  Aligned_cols=239  Identities=17%  Similarity=0.211  Sum_probs=183.3

Q ss_pred             cccCCCCCcceEEEEECCCCCEEEEecCCCcEEEEeCCccccccccCC--ccccccCCCCceeecCCCCCCCCcccCCCC
Q 021657            2 EILTGHQDNAEFALAMCPTEPYVLSGGKDKSVVLWSIQDHITSSATDP--ATAKSAGSSGSIIKQSPKPGDGNDKAADGP   79 (309)
Q Consensus         2 ~~l~~H~~~~V~~~~~~~~~~~l~t~~~dg~i~vwd~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   79 (309)
                      .+|.|-.+ .|+++.|.+++..+++++.|+.+++|++...........  ...........-..+..++.+..++.|++.
T Consensus       213 ~tLaGs~g-~it~~d~d~~~~~~iAas~d~~~r~Wnvd~~r~~~TLsGHtdkVt~ak~~~~~~~vVsgs~DRtiK~WDl~  291 (459)
T KOG0288|consen  213 STLAGSLG-NITSIDFDSDNKHVIAASNDKNLRLWNVDSLRLRHTLSGHTDKVTAAKFKLSHSRVVSGSADRTIKLWDLQ  291 (459)
T ss_pred             hhhhccCC-CcceeeecCCCceEEeecCCCceeeeeccchhhhhhhcccccceeeehhhccccceeeccccchhhhhhhh
Confidence            45666666 799999999999999999999999999998744333332  222222222222226678889999999999


Q ss_pred             CcCcccccccccCCeEEEEEecCCCcEEEEEcCCCeEEEEEcCCCCcceEEEeeccCCceeEEEeccCCCCeEEEEcCCC
Q 021657           80 SVGPRGIYNGHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADN  159 (309)
Q Consensus        80 ~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg  159 (309)
                      ...+.+.+.. ...+.+|..++   ..+++|-.|+.|++||.++..  .......+. .|+++..++ ++..+.+++.|.
T Consensus       292 k~~C~kt~l~-~S~cnDI~~~~---~~~~SgH~DkkvRfwD~Rs~~--~~~sv~~gg-~vtSl~ls~-~g~~lLsssRDd  363 (459)
T KOG0288|consen  292 KAYCSKTVLP-GSQCNDIVCSI---SDVISGHFDKKVRFWDIRSAD--KTRSVPLGG-RVTSLDLSM-DGLELLSSSRDD  363 (459)
T ss_pred             hhheeccccc-cccccceEecc---eeeeecccccceEEEeccCCc--eeeEeecCc-ceeeEeecc-CCeEEeeecCCC
Confidence            9877766553 34567777663   569999999999999999888  566655554 899999999 999999999999


Q ss_pred             cEEEEecCCCCCCCCCCceeeeccC----CCCeeEEEEecCCCcEEEEecCCCcEEEEeCCcccccccCCCCCcCCCCce
Q 021657          160 SVRMFDRRNLTSNGVGSPINKFEGH----SAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGL  235 (309)
Q Consensus       160 ~i~i~d~~~~~~~~~~~~~~~~~~~----~~~v~~~~~~~~~~~l~~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~  235 (309)
                      ++.++|+++      ......+...    ....+.+.|+|++.| +|+|+.||.|+||++.+               .++
T Consensus       364 tl~viDlRt------~eI~~~~sA~g~k~asDwtrvvfSpd~~Y-vaAGS~dgsv~iW~v~t---------------gKl  421 (459)
T KOG0288|consen  364 TLKVIDLRT------KEIRQTFSAEGFKCASDWTRVVFSPDGSY-VAAGSADGSVYIWSVFT---------------GKL  421 (459)
T ss_pred             ceeeeeccc------ccEEEEeeccccccccccceeEECCCCce-eeeccCCCcEEEEEccC---------------ceE
Confidence            999999999      6667666532    234789999999997 57999999999999988               223


Q ss_pred             eeeecCC--CcceeeEEEccCCCeEEEEecCCCCCCCCCCeEEEEE
Q 021657          236 FFQHAGH--RDKVVDFHWNASDPWTVVSVSDDCDSTGGGGTLQIWR  279 (309)
Q Consensus       236 ~~~~~~~--~~~v~~~~~~~~~~~~~~s~s~d~~s~~~dg~v~vw~  279 (309)
                      ...+...  ...|++++|+|.|..++        +++.++.+.+|.
T Consensus       422 E~~l~~s~s~~aI~s~~W~~sG~~Ll--------sadk~~~v~lW~  459 (459)
T KOG0288|consen  422 EKVLSLSTSNAAITSLSWNPSGSGLL--------SADKQKAVTLWT  459 (459)
T ss_pred             EEEeccCCCCcceEEEEEcCCCchhh--------cccCCcceEecC
Confidence            3333332  23699999999998877        777779999993

>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]

Probab=99.95  E-value=3e-27  Score=183.78  Aligned_cols=214  Identities=19%  Similarity=0.290  Sum_probs=162.7

Q ss_pred             cccCCCCCcceEEEEECCCC-CEEEEecCCCcEEEEeCCccccccccCCccccccCCCCceeecCCCCCCCCcccCCCCC
Q 021657            2 EILTGHQDNAEFALAMCPTE-PYVLSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPS   80 (309)
Q Consensus         2 ~~l~~H~~~~V~~~~~~~~~-~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (309)
                      ..-+||.. .++|.+|+|+. ..++|++.||++||||+.+.........                               
T Consensus       262 ~nTKGHia-~lt~g~whP~~k~~FlT~s~DgtlRiWdv~~~k~q~qVik-------------------------------  309 (641)
T KOG0772|consen  262 YNTKGHIA-ELTCGCWHPDNKEEFLTCSYDGTLRIWDVNNTKSQLQVIK-------------------------------  309 (641)
T ss_pred             hccCCcee-eeeccccccCcccceEEecCCCcEEEEecCCchhheeEEe-------------------------------
Confidence            34579999 89999999964 5799999999999999985421111000                               


Q ss_pred             cCcccccccccCCeEEEEEecCCCcEEEEEcCCCeEEEEEcCCCC-cceEEEeeccCC--ceeEEEeccCCCCeEEEEcC
Q 021657           81 VGPRGIYNGHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGT-SPVIKVEKAHDA--DLHCVDWNPLDDNLILTGSA  157 (309)
Q Consensus        81 ~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~-~~~~~~~~~~~~--~v~~~~~~~~~~~~l~~~~~  157 (309)
                         .....+..-+++.++|++++ .+||+|+.||.|.+|+..... .+....-.+|..  .|+|+.|++ +|++|++-+.
T Consensus       310 ---~k~~~g~Rv~~tsC~~nrdg-~~iAagc~DGSIQ~W~~~~~~v~p~~~vk~AH~~g~~Itsi~FS~-dg~~LlSRg~  384 (641)
T KOG0772|consen  310 ---TKPAGGKRVPVTSCAWNRDG-KLIAAGCLDGSIQIWDKGSRTVRPVMKVKDAHLPGQDITSISFSY-DGNYLLSRGF  384 (641)
T ss_pred             ---eccCCCcccCceeeecCCCc-chhhhcccCCceeeeecCCcccccceEeeeccCCCCceeEEEecc-ccchhhhccC
Confidence               00112344578999999999 779999999999999975443 345566678887  899999999 9999999999


Q ss_pred             CCcEEEEecCCCCCCCCCCceeeeccCC--CCeeEEEEecCCCcEEEEec------CCCcEEEEeCCcccccccCCCCCc
Q 021657          158 DNSVRMFDRRNLTSNGVGSPINKFEGHS--AAVLCVQWSPDKSSVFGSSA------EDGLLNIWDYEKVGKKVEQGPRTT  229 (309)
Q Consensus       158 dg~i~i~d~~~~~~~~~~~~~~~~~~~~--~~v~~~~~~~~~~~l~~~~~------~dg~i~iwd~~~~~~~~~~~~~~~  229 (309)
                      |+++++||+++.     .+++....+..  -+-+.++|+|+.+ |+++|+      ..|.+.+||..+            
T Consensus       385 D~tLKvWDLrq~-----kkpL~~~tgL~t~~~~tdc~FSPd~k-li~TGtS~~~~~~~g~L~f~d~~t------------  446 (641)
T KOG0772|consen  385 DDTLKVWDLRQF-----KKPLNVRTGLPTPFPGTDCCFSPDDK-LILTGTSAPNGMTAGTLFFFDRMT------------  446 (641)
T ss_pred             CCceeeeecccc-----ccchhhhcCCCccCCCCccccCCCce-EEEecccccCCCCCceEEEEeccc------------
Confidence            999999999996     55666655432  3456789999999 555775      357899999887            


Q ss_pred             CCCCceeeeecCCCcceeeEEEccCCCeEEEEecCCCCCCCCCCeEEEEEcc
Q 021657          230 NYPAGLFFQHAGHRDKVVDFHWNASDPWTVVSVSDDCDSTGGGGTLQIWRMS  281 (309)
Q Consensus       230 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~s~d~~s~~~dg~v~vw~~~  281 (309)
                         ...++.+.-....|..+.|+|.=+.++        .|+.||.+++|==.
T Consensus       447 ---~d~v~ki~i~~aSvv~~~WhpkLNQi~--------~gsgdG~~~vyYdp  487 (641)
T KOG0772|consen  447 ---LDTVYKIDISTASVVRCLWHPKLNQIF--------AGSGDGTAHVYYDP  487 (641)
T ss_pred             ---eeeEEEecCCCceEEEEeecchhhhee--------eecCCCceEEEECc
Confidence               344555566678899999999888888        45556888876443

>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]

Probab=99.95  E-value=1.7e-26  Score=177.06  Aligned_cols=221  Identities=17%  Similarity=0.302  Sum_probs=177.6

Q ss_pred             cccCCCCCcceEEEEECCCCCEEEEecCCCcEEEEeCCccccccccCCccccccCCCCceeecCCCCCCCCcccCCCCCc
Q 021657            2 EILTGHQDNAEFALAMCPTEPYVLSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSV   81 (309)
Q Consensus         2 ~~l~~H~~~~V~~~~~~~~~~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (309)
                      +.+..|.- +|.+++++|++++.++++.||+|.=|++.++.......+.....                   .    ...
T Consensus       136 ~~~~~H~~-s~~~vals~d~~~~fsask~g~i~kw~v~tgk~~~~i~~~~ev~-------------------k----~~~  191 (479)
T KOG0299|consen  136 RVIGKHQL-SVTSVALSPDDKRVFSASKDGTILKWDVLTGKKDRYIIERDEVL-------------------K----SHG  191 (479)
T ss_pred             eeeccccC-cceEEEeeccccceeecCCCcceeeeehhcCcccccccccchhh-------------------h----hcc
Confidence            45678988 78999999999999999999999999998764332221110000                   0    001


Q ss_pred             Cccccc-ccccCCeEEEEEecCCCcEEEEEcCCCeEEEEEcCCCCcceEEEeeccCCceeEEEeccCCCCeEEEEcCCCc
Q 021657           82 GPRGIY-NGHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNS  160 (309)
Q Consensus        82 ~~~~~~-~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~  160 (309)
                      .+...- ..|...+.+++.++++ .+|++|+.|..|.||+.++.+  .++.+.+|.+.|.+++|-. ....+++++.|+.
T Consensus       192 ~~~k~~r~~h~keil~~avS~Dg-kylatgg~d~~v~Iw~~~t~e--hv~~~~ghr~~V~~L~fr~-gt~~lys~s~Drs  267 (479)
T KOG0299|consen  192 NPLKESRKGHVKEILTLAVSSDG-KYLATGGRDRHVQIWDCDTLE--HVKVFKGHRGAVSSLAFRK-GTSELYSASADRS  267 (479)
T ss_pred             CCCCcccccccceeEEEEEcCCC-cEEEecCCCceEEEecCcccc--hhhcccccccceeeeeeec-CccceeeeecCCc
Confidence            111111 3799999999999999 899999999999999999988  6778999999999999998 8889999999999


Q ss_pred             EEEEecCCCCCCCCCCceeeeccCCCCeeEEEEecCCCcEEEEecCCCcEEEEeCCcccccccCCCCCcCCCCceeeeec
Q 021657          161 VRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHA  240 (309)
Q Consensus       161 i~i~d~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~  240 (309)
                      |++|++..      ...+.++.+|...|.+|....-++ ++.+|+.|+++++|++...                .-..+.
T Consensus       268 vkvw~~~~------~s~vetlyGHqd~v~~IdaL~reR-~vtVGgrDrT~rlwKi~ee----------------sqlifr  324 (479)
T KOG0299|consen  268 VKVWSIDQ------LSYVETLYGHQDGVLGIDALSRER-CVTVGGRDRTVRLWKIPEE----------------SQLIFR  324 (479)
T ss_pred             eEEEehhH------hHHHHHHhCCccceeeechhcccc-eEEeccccceeEEEecccc----------------ceeeee
Confidence            99999999      888999999999999999888887 4667889999999999552                123457


Q ss_pred             CCCcceeeEEEccCCCeEEEEecCCCCCCCCCCeEEEEEccc
Q 021657          241 GHRDKVVDFHWNASDPWTVVSVSDDCDSTGGGGTLQIWRMSD  282 (309)
Q Consensus       241 ~~~~~v~~~~~~~~~~~~~~s~s~d~~s~~~dg~v~vw~~~~  282 (309)
                      +|...+-+++|-.+. . ++       ||+.||.|.+|++..
T Consensus       325 g~~~sidcv~~In~~-H-fv-------sGSdnG~IaLWs~~K  357 (479)
T KOG0299|consen  325 GGEGSIDCVAFINDE-H-FV-------SGSDNGSIALWSLLK  357 (479)
T ss_pred             CCCCCeeeEEEeccc-c-ee-------eccCCceEEEeeecc
Confidence            788899999998644 3 44       555559999999984

>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]

Probab=99.95  E-value=1.2e-25  Score=164.86  Aligned_cols=204  Identities=23%  Similarity=0.383  Sum_probs=159.7

Q ss_pred             CcccCCCCCcceEEEEECCCCCEEEEecCCCcEEEEeCCccccccccCCccccccCCCCceeecCCCCCCCCcccCCCCC
Q 021657            1 MEILTGHQDNAEFALAMCPTEPYVLSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPS   80 (309)
Q Consensus         1 l~~l~~H~~~~V~~~~~~~~~~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (309)
                      ||.+.||+. .|.+|+.+|-+..+++++.|++||+||++...+                                     
T Consensus        93 lRYF~GH~~-~V~sL~~sP~~d~FlS~S~D~tvrLWDlR~~~c-------------------------------------  134 (311)
T KOG1446|consen   93 LRYFPGHKK-RVNSLSVSPKDDTFLSSSLDKTVRLWDLRVKKC-------------------------------------  134 (311)
T ss_pred             EEEcCCCCc-eEEEEEecCCCCeEEecccCCeEEeeEecCCCC-------------------------------------
Confidence            578899999 999999999999999999999999999984321                                     


Q ss_pred             cCcccccccccCCeEEEEEecCCCcEEEEEcCCCeEEEEEcCCCCcceEEEee---ccCCceeEEEeccCCCCeEEEEcC
Q 021657           81 VGPRGIYNGHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPVIKVEK---AHDADLHCVDWNPLDDNLILTGSA  157 (309)
Q Consensus        81 ~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~---~~~~~v~~~~~~~~~~~~l~~~~~  157 (309)
                         ...+.  ...-..++|.|+| .+||++.....|++||++.-...+...+.   +.....+.|.|+| +|++++.+..
T Consensus       135 ---qg~l~--~~~~pi~AfDp~G-LifA~~~~~~~IkLyD~Rs~dkgPF~tf~i~~~~~~ew~~l~FS~-dGK~iLlsT~  207 (311)
T KOG1446|consen  135 ---QGLLN--LSGRPIAAFDPEG-LIFALANGSELIKLYDLRSFDKGPFTTFSITDNDEAEWTDLEFSP-DGKSILLSTN  207 (311)
T ss_pred             ---ceEEe--cCCCcceeECCCC-cEEEEecCCCeEEEEEecccCCCCceeEccCCCCccceeeeEEcC-CCCEEEEEeC
Confidence               11111  1222356899999 88888888889999999976433344433   3367889999999 9999999999


Q ss_pred             CCcEEEEecCCCCCCCCCCceeeeccCCCCe---eEEEEecCCCcEEEEecCCCcEEEEeCCcccccccCCCCCcCCCCc
Q 021657          158 DNSVRMFDRRNLTSNGVGSPINKFEGHSAAV---LCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAG  234 (309)
Q Consensus       158 dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~v---~~~~~~~~~~~l~~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~  234 (309)
                      .+.+++.|.-.      |..+.++..+...-   ...+|.||+++++ +|+.||+|.+|++++               ..
T Consensus       208 ~s~~~~lDAf~------G~~~~tfs~~~~~~~~~~~a~ftPds~Fvl-~gs~dg~i~vw~~~t---------------g~  265 (311)
T KOG1446|consen  208 ASFIYLLDAFD------GTVKSTFSGYPNAGNLPLSATFTPDSKFVL-SGSDDGTIHVWNLET---------------GK  265 (311)
T ss_pred             CCcEEEEEccC------CcEeeeEeeccCCCCcceeEEECCCCcEEE-EecCCCcEEEEEcCC---------------Cc
Confidence            99999999988      88888887654432   5678999999754 999999999999987               34


Q ss_pred             eeeeecC-CCcceeeEEEccCCCeEEEEecCCCCCCCCCCeEEEEEcc
Q 021657          235 LFFQHAG-HRDKVVDFHWNASDPWTVVSVSDDCDSTGGGGTLQIWRMS  281 (309)
Q Consensus       235 ~~~~~~~-~~~~v~~~~~~~~~~~~~~s~s~d~~s~~~dg~v~vw~~~  281 (309)
                      .+..+.+ +..++.++.|+|... ++++++         ..+.+|=..
T Consensus       266 ~v~~~~~~~~~~~~~~~fnP~~~-mf~sa~---------s~l~fw~p~  303 (311)
T KOG1446|consen  266 KVAVLRGPNGGPVSCVRFNPRYA-MFVSAS---------SNLVFWLPD  303 (311)
T ss_pred             EeeEecCCCCCCccccccCCcee-eeeecC---------ceEEEEecc
Confidence            4556666 688999999999543 454443         578899766

>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.95  E-value=1.8e-27  Score=200.84  Aligned_cols=231  Identities=21%  Similarity=0.394  Sum_probs=185.7

Q ss_pred             eEEEEECCCCCE----EEEecCCCcEEEEeCCccccccccCCccccccCCCCceeecCCCCCCCCcccCCCCCcCccccc
Q 021657           12 EFALAMCPTEPY----VLSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIY   87 (309)
Q Consensus        12 V~~~~~~~~~~~----l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   87 (309)
                      -+.|+|.+.+..    |+.|..||.|.+||.....                                  .......+...
T Consensus        67 F~kL~W~~~g~~~~GlIaGG~edG~I~ly~p~~~~----------------------------------~~~~~~~la~~  112 (1049)
T KOG0307|consen   67 FNKLAWGSYGSHSHGLIAGGLEDGNIVLYDPASII----------------------------------ANASEEVLATK  112 (1049)
T ss_pred             ceeeeecccCCCccceeeccccCCceEEecchhhc----------------------------------cCcchHHHhhh
Confidence            467899887665    8899999999999987421                                  01233346677


Q ss_pred             ccccCCeEEEEEecCCCcEEEEEcCCCeEEEEEcCCCCcceEEEeeccCCceeEEEeccCCCCeEEEEcCCCcEEEEecC
Q 021657           88 NGHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRR  167 (309)
Q Consensus        88 ~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~  167 (309)
                      ..|.+.|..+.|++..+++||+|+.||.|.|||+...+.+....-....+.|.+++|+......|++++.+|.+.|||+|
T Consensus       113 ~~h~G~V~gLDfN~~q~nlLASGa~~geI~iWDlnn~~tP~~~~~~~~~~eI~~lsWNrkvqhILAS~s~sg~~~iWDlr  192 (1049)
T KOG0307|consen  113 SKHTGPVLGLDFNPFQGNLLASGADDGEILIWDLNKPETPFTPGSQAPPSEIKCLSWNRKVSHILASGSPSGRAVIWDLR  192 (1049)
T ss_pred             cccCCceeeeeccccCCceeeccCCCCcEEEeccCCcCCCCCCCCCCCcccceEeccchhhhHHhhccCCCCCceecccc
Confidence            88999999999999987899999999999999998866433222233567899999998777899999999999999999


Q ss_pred             CCCCCCCCCceeeeccCCC--CeeEEEEecCCCcEEEEecCC---CcEEEEeCCcccccccCCCCCcCCCCceeeeecCC
Q 021657          168 NLTSNGVGSPINKFEGHSA--AVLCVQWSPDKSSVFGSSAED---GLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGH  242 (309)
Q Consensus       168 ~~~~~~~~~~~~~~~~~~~--~v~~~~~~~~~~~l~~~~~~d---g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~  242 (309)
                      .      .+++..+..+..  .+..++|+|+...-++++++|   -.|.+||+|....              ++..+.+|
T Consensus       193 ~------~~pii~ls~~~~~~~~S~l~WhP~~aTql~~As~dd~~PviqlWDlR~ass--------------P~k~~~~H  252 (1049)
T KOG0307|consen  193 K------KKPIIKLSDTPGRMHCSVLAWHPDHATQLLVASGDDSAPVIQLWDLRFASS--------------PLKILEGH  252 (1049)
T ss_pred             C------CCcccccccCCCccceeeeeeCCCCceeeeeecCCCCCceeEeecccccCC--------------chhhhccc
Confidence            8      777777765544  478999999987656666655   3599999997433              34566899


Q ss_pred             CcceeeEEEccCCCeEEEEecCCCCCCCCCCeEEEEEccccccCChhhHhHhhhcccceEEEeeeCC
Q 021657          243 RDKVVDFHWNASDPWTVVSVSDDCDSTGGGGTLQIWRMSDLIYRPQDEVLAELEKFKAHVISCTSKP  309 (309)
Q Consensus       243 ~~~v~~~~~~~~~~~~~~s~s~d~~s~~~dg~v~vw~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~P  309 (309)
                      ...|.++.|++.++.+++       |+|.|+.|.+|+.+      +++.+.++....+.+..+.|.|
T Consensus       253 ~~GilslsWc~~D~~lll-------SsgkD~~ii~wN~~------tgEvl~~~p~~~nW~fdv~w~p  306 (1049)
T KOG0307|consen  253 QRGILSLSWCPQDPRLLL-------SSGKDNRIICWNPN------TGEVLGELPAQGNWCFDVQWCP  306 (1049)
T ss_pred             ccceeeeccCCCCchhhh-------cccCCCCeeEecCC------CceEeeecCCCCcceeeeeecC
Confidence            999999999999977777       45555999999999      8999999988788899999986

>KOG4328 consensus WD40 protein [Function unknown]

Probab=99.95  E-value=2.4e-26  Score=176.16  Aligned_cols=217  Identities=19%  Similarity=0.277  Sum_probs=174.7

Q ss_pred             ccCCCCCcceEEEEECCCC--CEEEEecCCCcEEEEeCCccccccccCCccccccCCCCceeecCCCCCCCCcccCCCCC
Q 021657            3 ILTGHQDNAEFALAMCPTE--PYVLSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPS   80 (309)
Q Consensus         3 ~l~~H~~~~V~~~~~~~~~--~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (309)
                      ..+-|.+ .|++++|+|..  +++|+|..-|+|-+||+.+.+                                    ..
T Consensus       181 v~kv~~~-Rit~l~fHPt~~~~lva~GdK~G~VG~Wn~~~~~------------------------------------~d  223 (498)
T KOG4328|consen  181 VAKVTDR-RITSLAFHPTENRKLVAVGDKGGQVGLWNFGTQE------------------------------------KD  223 (498)
T ss_pred             eeEeccc-ceEEEEecccCcceEEEEccCCCcEEEEecCCCC------------------------------------Cc
Confidence            3455677 89999999965  478899999999999996211                                    12


Q ss_pred             cCcccccccccCCeEEEEEecCCCcEEEEEcCCCeEEEEEcCCCCcceEEEeeccCCceeEEEeccCCCCeEEEEcCCCc
Q 021657           81 VGPRGIYNGHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNS  160 (309)
Q Consensus        81 ~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~  160 (309)
                      ...+..+..|..+|.++.|+|.+...+++.+.||+|++-|++......+.........+.++.|+. +...++.+..=|.
T Consensus       224 ~d~v~~f~~hs~~Vs~l~F~P~n~s~i~ssSyDGtiR~~D~~~~i~e~v~s~~~d~~~fs~~d~~~-e~~~vl~~~~~G~  302 (498)
T KOG4328|consen  224 KDGVYLFTPHSGPVSGLKFSPANTSQIYSSSYDGTIRLQDFEGNISEEVLSLDTDNIWFSSLDFSA-ESRSVLFGDNVGN  302 (498)
T ss_pred             cCceEEeccCCccccceEecCCChhheeeeccCceeeeeeecchhhHHHhhcCccceeeeeccccC-CCccEEEeecccc
Confidence            233566788999999999999988899999999999999998876444444444566788889988 6666666666679


Q ss_pred             EEEEecCCCCCCCCCCceeeeccCCCCeeEEEEecCCCcEEEEecCCCcEEEEeCCcccccccCCCCCcCCCCceeeeec
Q 021657          161 VRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHA  240 (309)
Q Consensus       161 i~i~d~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~  240 (309)
                      ..+||+|+.     +.....+..|+..|++|+++|..++++|+++.|++.+|||++.......           ++....
T Consensus       303 f~~iD~R~~-----~s~~~~~~lh~kKI~sv~~NP~~p~~laT~s~D~T~kIWD~R~l~~K~s-----------p~lst~  366 (498)
T KOG4328|consen  303 FNVIDLRTD-----GSEYENLRLHKKKITSVALNPVCPWFLATASLDQTAKIWDLRQLRGKAS-----------PFLSTL  366 (498)
T ss_pred             eEEEEeecC-----CccchhhhhhhcccceeecCCCCchheeecccCcceeeeehhhhcCCCC-----------cceecc
Confidence            999999995     4446677778889999999999999999999999999999998544321           244556


Q ss_pred             CCCcceeeEEEccCCCeEEEEecCCCCCCCCCCeEEEEEcc
Q 021657          241 GHRDKVVDFHWNASDPWTVVSVSDDCDSTGGGGTLQIWRMS  281 (309)
Q Consensus       241 ~~~~~v~~~~~~~~~~~~~~s~s~d~~s~~~dg~v~vw~~~  281 (309)
                      .|...|.+..|||.+..|+        |.+.|..|+|||..
T Consensus       367 ~HrrsV~sAyFSPs~gtl~--------TT~~D~~IRv~dss  399 (498)
T KOG4328|consen  367 PHRRSVNSAYFSPSGGTLL--------TTCQDNEIRVFDSS  399 (498)
T ss_pred             cccceeeeeEEcCCCCceE--------eeccCCceEEeecc
Confidence            7999999999999999866        66666899999995

>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]

Probab=99.95  E-value=8.1e-26  Score=180.00  Aligned_cols=240  Identities=20%  Similarity=0.310  Sum_probs=175.4

Q ss_pred             ccCCCCCcceEEEEECCCCCEEEEecCCCcEEEEeCCccccccccCCccccccCCCCceeecCCCCCCCCcccCCCCCcC
Q 021657            3 ILTGHQDNAEFALAMCPTEPYVLSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVG   82 (309)
Q Consensus         3 ~l~~H~~~~V~~~~~~~~~~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   82 (309)
                      ....|.. +|..+.|.|-...|++++.|.++++||++....                                      .
T Consensus        95 ~~~aH~n-AifDl~wapge~~lVsasGDsT~r~Wdvk~s~l--------------------------------------~  135 (720)
T KOG0321|consen   95 KPLAHKN-AIFDLKWAPGESLLVSASGDSTIRPWDVKTSRL--------------------------------------V  135 (720)
T ss_pred             ccccccc-eeEeeccCCCceeEEEccCCceeeeeeecccee--------------------------------------e
Confidence            4567998 999999999667899999999999999985321                                      1


Q ss_pred             cccccccccCCeEEEEEecCCCcEEEEEcCCCeEEEEEcCCCCc-------------------------ceEEEeeccCC
Q 021657           83 PRGIYNGHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTS-------------------------PVIKVEKAHDA  137 (309)
Q Consensus        83 ~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~-------------------------~~~~~~~~~~~  137 (309)
                      -...+.+|.+.|.+++|.|+++..|++|+.||.|.|||++....                         .......++..
T Consensus       136 G~~~~~GH~~SvkS~cf~~~n~~vF~tGgRDg~illWD~R~n~~d~~e~~~~~~~~~~n~~ptpskp~~kr~~k~kA~s~  215 (720)
T KOG0321|consen  136 GGRLNLGHTGSVKSECFMPTNPAVFCTGGRDGEILLWDCRCNGVDALEEFDNRIYGRHNTAPTPSKPLKKRIRKWKAASN  215 (720)
T ss_pred             cceeecccccccchhhhccCCCcceeeccCCCcEEEEEEeccchhhHHHHhhhhhccccCCCCCCchhhccccccccccC
Confidence            12347799999999999999999999999999999999864320                         01111233444


Q ss_pred             ceeE---EEeccCCCCeEEEEcC-CCcEEEEecCCCCCCCCCCceeeec--cC---CCCeeEEEEecCCCcEEEEecCCC
Q 021657          138 DLHC---VDWNPLDDNLILTGSA-DNSVRMFDRRNLTSNGVGSPINKFE--GH---SAAVLCVQWSPDKSSVFGSSAEDG  208 (309)
Q Consensus       138 ~v~~---~~~~~~~~~~l~~~~~-dg~i~i~d~~~~~~~~~~~~~~~~~--~~---~~~v~~~~~~~~~~~l~~~~~~dg  208 (309)
                      .|.+   +.+.. +...||+++. |+.|+|||++........++.....  .+   ...+.++.....|.+|+|+|. |+
T Consensus       216 ti~ssvTvv~fk-De~tlaSaga~D~~iKVWDLRk~~~~~r~ep~~~~~~~t~skrs~G~~nL~lDssGt~L~AsCt-D~  293 (720)
T KOG0321|consen  216 TIFSSVTVVLFK-DESTLASAGAADSTIKVWDLRKNYTAYRQEPRGSDKYPTHSKRSVGQVNLILDSSGTYLFASCT-DN  293 (720)
T ss_pred             ceeeeeEEEEEe-ccceeeeccCCCcceEEEeecccccccccCCCcccCccCcccceeeeEEEEecCCCCeEEEEec-CC
Confidence            4444   44455 7888888888 9999999999865443334433332  22   335777888888999987776 99


Q ss_pred             cEEEEeCCcccccccCCCCCcCCCCceeeeecCCCcc--eeeEEEccCCCeEEEEecCCCCCCCCCCeEEEEEccccccC
Q 021657          209 LLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDK--VVDFHWNASDPWTVVSVSDDCDSTGGGGTLQIWRMSDLIYR  286 (309)
Q Consensus       209 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--v~~~~~~~~~~~~~~s~s~d~~s~~~dg~v~vw~~~~~~~~  286 (309)
                      .|++|++...+.             .++..+.++...  -..-..+|++.+++        +|+.|...++|.+..    
T Consensus       294 sIy~ynm~s~s~-------------sP~~~~sg~~~~sf~vks~lSpd~~~l~--------SgSsd~~ayiw~vs~----  348 (720)
T KOG0321|consen  294 SIYFYNMRSLSI-------------SPVAEFSGKLNSSFYVKSELSPDDCSLL--------SGSSDEQAYIWVVSS----  348 (720)
T ss_pred             cEEEEeccccCc-------------CchhhccCcccceeeeeeecCCCCceEe--------ccCCCcceeeeeecC----
Confidence            999999987333             233334443221  12334688888877        888889999999995    


Q ss_pred             ChhhHhHhhhcccceEEEeeeCC
Q 021657          287 PQDEVLAELEKFKAHVISCTSKP  309 (309)
Q Consensus       287 ~~~~~~~~~~~h~~~v~~~~~~P  309 (309)
                       .......+.+|.-.|+++.|.|
T Consensus       349 -~e~~~~~l~Ght~eVt~V~w~p  370 (720)
T KOG0321|consen  349 -PEAPPALLLGHTREVTTVRWLP  370 (720)
T ss_pred             -ccCChhhhhCcceEEEEEeecc
Confidence             3455677889999999999987

>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]

Probab=99.95  E-value=1.4e-27  Score=192.47  Aligned_cols=190  Identities=22%  Similarity=0.407  Sum_probs=170.0

Q ss_pred             ccCCCCCcceEEEEECCCCCEEEEecCCCcEEEEeCCccccccccCCccccccCCCCceeecCCCCCCCCcccCCCCCcC
Q 021657            3 ILTGHQDNAEFALAMCPTEPYVLSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVG   82 (309)
Q Consensus         3 ~l~~H~~~~V~~~~~~~~~~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   82 (309)
                      .|.+|.. +|.++.|+++..+|++|+.+|+|++||++                                        ..+
T Consensus        65 S~~~hes-pIeSl~f~~~E~LlaagsasgtiK~wDle----------------------------------------eAk  103 (825)
T KOG0267|consen   65 SLTGHES-PIESLTFDTSERLLAAGSASGTIKVWDLE----------------------------------------EAK  103 (825)
T ss_pred             eeeccCC-cceeeecCcchhhhcccccCCceeeeehh----------------------------------------hhh
Confidence            4789999 99999999999999999999999999997                                        344


Q ss_pred             cccccccccCCeEEEEEecCCCcEEEEEcCCCeEEEEEcCCCCcceEEEeeccCCceeEEEeccCCCCeEEEEcCCCcEE
Q 021657           83 PRGIYNGHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVR  162 (309)
Q Consensus        83 ~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~  162 (309)
                      .++.+.+|...+..+.|+|-+ .++++|+.|+.+++||.+...  +...+.+|...+.+++|+| +|.+++.|+.|.+++
T Consensus       104 ~vrtLtgh~~~~~sv~f~P~~-~~~a~gStdtd~~iwD~Rk~G--c~~~~~s~~~vv~~l~lsP-~Gr~v~~g~ed~tvk  179 (825)
T KOG0267|consen  104 IVRTLTGHLLNITSVDFHPYG-EFFASGSTDTDLKIWDIRKKG--CSHTYKSHTRVVDVLRLSP-DGRWVASGGEDNTVK  179 (825)
T ss_pred             hhhhhhccccCcceeeeccce-EEeccccccccceehhhhccC--ceeeecCCcceeEEEeecC-CCceeeccCCcceee
Confidence            567889999999999999998 888999999999999998665  6888889999999999999 999999999999999


Q ss_pred             EEecCCCCCCCCCCceeeeccCCCCeeEEEEecCCCcEEEEecCCCcEEEEeCCcccccccCCCCCcCCCCceeeeecCC
Q 021657          163 MFDRRNLTSNGVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGH  242 (309)
Q Consensus       163 i~d~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~  242 (309)
                      +||+..      ++.+..|..|.+.+.++.|+|..- |+++|+.|+++++||+++               .+.+......
T Consensus       180 i~d~~a------gk~~~ef~~~e~~v~sle~hp~e~-Lla~Gs~d~tv~f~dlet---------------fe~I~s~~~~  237 (825)
T KOG0267|consen  180 IWDLTA------GKLSKEFKSHEGKVQSLEFHPLEV-LLAPGSSDRTVRFWDLET---------------FEVISSGKPE  237 (825)
T ss_pred             eecccc------cccccccccccccccccccCchhh-hhccCCCCceeeeeccce---------------eEEeeccCCc
Confidence            999999      999999999999999999999776 789999999999999997               3444555555


Q ss_pred             CcceeeEEEccCCCeEE
Q 021657          243 RDKVVDFHWNASDPWTV  259 (309)
Q Consensus       243 ~~~v~~~~~~~~~~~~~  259 (309)
                      ...|.+.+|+|++..++
T Consensus       238 ~~~v~~~~fn~~~~~~~  254 (825)
T KOG0267|consen  238 TDGVRSLAFNPDGKIVL  254 (825)
T ss_pred             cCCceeeeecCCceeee
Confidence            77899999999876443

>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]

Probab=99.95  E-value=5.3e-26  Score=182.60  Aligned_cols=196  Identities=21%  Similarity=0.356  Sum_probs=165.7

Q ss_pred             CcccCCCCCcceEEEEECCCCCEEEEecCCCcEEEEeCCccccccccCCccccccCCCCceeecCCCCCCCCcccCCCCC
Q 021657            1 MEILTGHQDNAEFALAMCPTEPYVLSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPS   80 (309)
Q Consensus         1 l~~l~~H~~~~V~~~~~~~~~~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (309)
                      +.+|+||+. .|.|++...++. |++||.|.+++||-...                                        
T Consensus        94 ~~~LkgH~s-nVC~ls~~~~~~-~iSgSWD~TakvW~~~~----------------------------------------  131 (745)
T KOG0301|consen   94 LYTLKGHKS-NVCSLSIGEDGT-LISGSWDSTAKVWRIGE----------------------------------------  131 (745)
T ss_pred             hhhhhcccc-ceeeeecCCcCc-eEecccccceEEecchh----------------------------------------
Confidence            357999999 789999877777 99999999999998763                                        


Q ss_pred             cCcccccccccCCeEEEEEecCCCcEEEEEcCCCeEEEEEcCCCCcceEEEeeccCCceeEEEeccCCCCeEEEEcCCCc
Q 021657           81 VGPRGIYNGHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNS  160 (309)
Q Consensus        81 ~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~  160 (309)
                        ....+.+|+..|+++..-|.+  .++||+.|.+|++|.-  ++  ...++.+|.+.|+.+++-+  ...|++++.||.
T Consensus       132 --l~~~l~gH~asVWAv~~l~e~--~~vTgsaDKtIklWk~--~~--~l~tf~gHtD~VRgL~vl~--~~~flScsNDg~  201 (745)
T KOG0301|consen  132 --LVYSLQGHTASVWAVASLPEN--TYVTGSADKTIKLWKG--GT--LLKTFSGHTDCVRGLAVLD--DSHFLSCSNDGS  201 (745)
T ss_pred             --hhcccCCcchheeeeeecCCC--cEEeccCcceeeeccC--Cc--hhhhhccchhheeeeEEec--CCCeEeecCCce
Confidence              345588999999999999976  7999999999999974  45  6788999999999999987  567899999999


Q ss_pred             EEEEecCCCCCCCCCCceeeeccCCCCeeEEEEecCCCcEEEEecCCCcEEEEeCCcccccccCCCCCcCCCCceeeeec
Q 021657          161 VRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHA  240 (309)
Q Consensus       161 i~i~d~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~  240 (309)
                      |++|++.       +..+.++.+|...+.+++...++. +++++++|++++||+...                 +...+.
T Consensus       202 Ir~w~~~-------ge~l~~~~ghtn~vYsis~~~~~~-~Ivs~gEDrtlriW~~~e-----------------~~q~I~  256 (745)
T KOG0301|consen  202 IRLWDLD-------GEVLLEMHGHTNFVYSISMALSDG-LIVSTGEDRTLRIWKKDE-----------------CVQVIT  256 (745)
T ss_pred             EEEEecc-------CceeeeeeccceEEEEEEecCCCC-eEEEecCCceEEEeecCc-----------------eEEEEe
Confidence            9999994       889999999999999999666666 577999999999999874                 333444


Q ss_pred             CCCcceeeEEEccCCCeEEEEecCCCCCCCCCCeEEEEEccc
Q 021657          241 GHRDKVVDFHWNASDPWTVVSVSDDCDSTGGGGTLQIWRMSD  282 (309)
Q Consensus       241 ~~~~~v~~~~~~~~~~~~~~s~s~d~~s~~~dg~v~vw~~~~  282 (309)
                      -....|+++.+-+++. ++        +|+.||.|+||....
T Consensus       257 lPttsiWsa~~L~NgD-Iv--------vg~SDG~VrVfT~~k  289 (745)
T KOG0301|consen  257 LPTTSIWSAKVLLNGD-IV--------VGGSDGRVRVFTVDK  289 (745)
T ss_pred             cCccceEEEEEeeCCC-EE--------EeccCceEEEEEecc
Confidence            4455789999988777 45        566779999999874

>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]

Probab=99.95  E-value=3.3e-26  Score=181.02  Aligned_cols=272  Identities=17%  Similarity=0.228  Sum_probs=200.0

Q ss_pred             ccCCCCCcceEEEEECCCCCEEEEecCCCcEEEEeCCccccccccCCcccc-----ccCCCCceeecCCC----------
Q 021657            3 ILTGHQDNAEFALAMCPTEPYVLSGGKDKSVVLWSIQDHITSSATDPATAK-----SAGSSGSIIKQSPK----------   67 (309)
Q Consensus         3 ~l~~H~~~~V~~~~~~~~~~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~----------   67 (309)
                      .++||++ .|.+|..+|.|.+|++|+.||+||||.+.++.+..........     .+.....+..++.+          
T Consensus       395 vyrGHtg-~Vr~iSvdp~G~wlasGsdDGtvriWEi~TgRcvr~~~~d~~I~~vaw~P~~~~~vLAvA~~~~~~ivnp~~  473 (733)
T KOG0650|consen  395 VYRGHTG-LVRSISVDPSGEWLASGSDDGTVRIWEIATGRCVRTVQFDSEIRSVAWNPLSDLCVLAVAVGECVLIVNPIF  473 (733)
T ss_pred             eEeccCC-eEEEEEecCCcceeeecCCCCcEEEEEeecceEEEEEeecceeEEEEecCCCCceeEEEEecCceEEeCccc
Confidence            5789999 9999999999999999999999999999998554433221110     11111111111111          


Q ss_pred             --------------------CCCCCcccCCCCCcC----cccccccccCCeEEEEEecCCCcEEEEEcC---CCeEEEEE
Q 021657           68 --------------------PGDGNDKAADGPSVG----PRGIYNGHEDTVEDVTFCPSSAQEFCSVGD---DSCLILWD  120 (309)
Q Consensus        68 --------------------~~~~~~~~~~~~~~~----~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~---dg~i~iwd  120 (309)
                                          ..+..+..|.....+    -+...-.|...|..+.|+..| .+|++...   ...|.|.+
T Consensus       474 G~~~e~~~t~ell~~~~~~~~p~~~~~~W~~~~~~e~~~~v~~~I~~~k~i~~vtWHrkG-DYlatV~~~~~~~~VliHQ  552 (733)
T KOG0650|consen  474 GDRLEVGPTKELLASAPNESEPDAAVVTWSRASLDELEKGVCIVIKHPKSIRQVTWHRKG-DYLATVMPDSGNKSVLIHQ  552 (733)
T ss_pred             cchhhhcchhhhhhcCCCccCCcccceeechhhhhhhccceEEEEecCCccceeeeecCC-ceEEEeccCCCcceEEEEe
Confidence                                111223344333111    123455688999999999999 78887664   35789999


Q ss_pred             cCCCCcceEEEeeccCCceeEEEeccCCCCeEEEEcCCCcEEEEecCCCCCCCCCCceeeeccCCCCeeEEEEecCCCcE
Q 021657          121 ARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWSPDKSSV  200 (309)
Q Consensus       121 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l  200 (309)
                      +....  ....+....+.|.++.|+| ...+|++++. ..|++||+..      ...+..+......|.+++++|.|.+|
T Consensus       553 LSK~~--sQ~PF~kskG~vq~v~FHP-s~p~lfVaTq-~~vRiYdL~k------qelvKkL~tg~kwiS~msihp~GDnl  622 (733)
T KOG0650|consen  553 LSKRK--SQSPFRKSKGLVQRVKFHP-SKPYLFVATQ-RSVRIYDLSK------QELVKKLLTGSKWISSMSIHPNGDNL  622 (733)
T ss_pred             ccccc--ccCchhhcCCceeEEEecC-CCceEEEEec-cceEEEehhH------HHHHHHHhcCCeeeeeeeecCCCCeE
Confidence            98776  3455656678899999999 7777777764 5799999988      77788887778889999999999986


Q ss_pred             EEEecCCCcEEEEeCCcccccccCCCCCcCCCCceeeeecCCCcceeeEEEccCCCeEEEEecCCCCCCCCCCeEEEEEc
Q 021657          201 FGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKVVDFHWNASDPWTVVSVSDDCDSTGGGGTLQIWRM  280 (309)
Q Consensus       201 ~~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~s~d~~s~~~dg~v~vw~~  280 (309)
                      + .|+.|+.+..||+....+              +...+.-|...+++++|++.-+ |++++|+|       |++.|+.-
T Consensus       623 i-~gs~d~k~~WfDldlssk--------------Pyk~lr~H~~avr~Va~H~ryP-Lfas~sdD-------gtv~Vfhg  679 (733)
T KOG0650|consen  623 I-LGSYDKKMCWFDLDLSSK--------------PYKTLRLHEKAVRSVAFHKRYP-LFASGSDD-------GTVIVFHG  679 (733)
T ss_pred             E-EecCCCeeEEEEcccCcc--------------hhHHhhhhhhhhhhhhhccccc-eeeeecCC-------CcEEEEee
Confidence            5 899999999999987433              3456778999999999999766 67766666       99999984


Q ss_pred             c---ccccCChhhHhHhhhcccce----EEEeeeCC
Q 021657          281 S---DLIYRPQDEVLAELEKFKAH----VISCTSKP  309 (309)
Q Consensus       281 ~---~~~~~~~~~~~~~~~~h~~~----v~~~~~~P  309 (309)
                      .   ++.+.+.--+++.+.+|...    |..+.|||
T Consensus       680 ~VY~Dl~qnpliVPlK~L~gH~~~~~~gVLd~~wHP  715 (733)
T KOG0650|consen  680 MVYNDLLQNPLIVPLKRLRGHEKTNDLGVLDTIWHP  715 (733)
T ss_pred             eeehhhhcCCceEeeeeccCceeecccceEeecccC
Confidence            3   33444556678899999876    99999998

>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]

Probab=99.94  E-value=3.6e-26  Score=177.52  Aligned_cols=240  Identities=19%  Similarity=0.364  Sum_probs=184.7

Q ss_pred             CCCCcceEEEEECCCCCEEEEecCCCcEEEEeCCccccccccCCccccccCCCCceeecCCCCCCCCcccCCCCCcCccc
Q 021657            6 GHQDNAEFALAMCPTEPYVLSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRG   85 (309)
Q Consensus         6 ~H~~~~V~~~~~~~~~~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   85 (309)
                      .|.. .|.++.++...+++.||+. |.|+|||+....                                     ...++.
T Consensus       417 ~HGE-vVcAvtIS~~trhVyTgGk-gcVKVWdis~pg-------------------------------------~k~Pvs  457 (705)
T KOG0639|consen  417 AHGE-VVCAVTISNPTRHVYTGGK-GCVKVWDISQPG-------------------------------------NKSPVS  457 (705)
T ss_pred             ccCc-EEEEEEecCCcceeEecCC-CeEEEeeccCCC-------------------------------------CCCccc
Confidence            4777 8999999999999999985 899999997541                                     111222


Q ss_pred             ccc--cccCCeEEEEEecCCCcEEEEEcCCCeEEEEEcCCCCcceEEEeeccCCceeEEEeccCCCCeEEEEcCCCcEEE
Q 021657           86 IYN--GHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRM  163 (309)
Q Consensus        86 ~~~--~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i  163 (309)
                      .+.  .....|.++...|+| +.|++|++-.++.|||+......+...+....-..++++.+| +.+..+++..||.|.|
T Consensus       458 qLdcl~rdnyiRSckL~pdg-rtLivGGeastlsiWDLAapTprikaeltssapaCyALa~sp-DakvcFsccsdGnI~v  535 (705)
T KOG0639|consen  458 QLDCLNRDNYIRSCKLLPDG-RTLIVGGEASTLSIWDLAAPTPRIKAELTSSAPACYALAISP-DAKVCFSCCSDGNIAV  535 (705)
T ss_pred             cccccCcccceeeeEecCCC-ceEEeccccceeeeeeccCCCcchhhhcCCcchhhhhhhcCC-ccceeeeeccCCcEEE
Confidence            222  234578999999999 779999999999999998877444444444445678899999 9999999999999999


Q ss_pred             EecCCCCCCCCCCceeeeccCCCCeeEEEEecCCCcEEEEecCCCcEEEEeCCcccccccCCCCCcC-------------
Q 021657          164 FDRRNLTSNGVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTN-------------  230 (309)
Q Consensus       164 ~d~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~dg~i~iwd~~~~~~~~~~~~~~~~-------------  230 (309)
                      ||+++      ...++.|++|...+.||.+++||..| .+|+-|++|+.||++...+..+......-             
T Consensus       536 wDLhn------q~~VrqfqGhtDGascIdis~dGtkl-WTGGlDntvRcWDlregrqlqqhdF~SQIfSLg~cP~~dWla  608 (705)
T KOG0639|consen  536 WDLHN------QTLVRQFQGHTDGASCIDISKDGTKL-WTGGLDNTVRCWDLREGRQLQQHDFSSQIFSLGYCPTGDWLA  608 (705)
T ss_pred             EEccc------ceeeecccCCCCCceeEEecCCCcee-ecCCCccceeehhhhhhhhhhhhhhhhhheecccCCCcccee
Confidence            99999      88999999999999999999999985 69999999999999986655444322210             


Q ss_pred             ------------CCCceeeeecCCCcceeeEEEccCCCeEEEEecCCCCCCCCCCeEEEEEccccccCChhhHhHhhhcc
Q 021657          231 ------------YPAGLFFQHAGHRDKVVDFHWNASDPWTVVSVSDDCDSTGGGGTLQIWRMSDLIYRPQDEVLAELEKF  298 (309)
Q Consensus       231 ------------~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~s~d~~s~~~dg~v~vw~~~~~~~~~~~~~~~~~~~h  298 (309)
                                  ......+.+.-|..-|.++.|.+-|.+++        +.|.|+.+..|.+.      -+..+.+.+. 
T Consensus       609 vGMens~vevlh~skp~kyqlhlheScVLSlKFa~cGkwfv--------StGkDnlLnawrtP------yGasiFqskE-  673 (705)
T KOG0639|consen  609 VGMENSNVEVLHTSKPEKYQLHLHESCVLSLKFAYCGKWFV--------STGKDNLLNAWRTP------YGASIFQSKE-  673 (705)
T ss_pred             eecccCcEEEEecCCccceeecccccEEEEEEecccCceee--------ecCchhhhhhccCc------cccceeeccc-
Confidence                        01112344556788999999999999877        77777999999998      4555555542 


Q ss_pred             cceEEEeeeC
Q 021657          299 KAHVISCTSK  308 (309)
Q Consensus       299 ~~~v~~~~~~  308 (309)
                      ..+|++|..+
T Consensus       674 ~SsVlsCDIS  683 (705)
T KOG0639|consen  674 SSSVLSCDIS  683 (705)
T ss_pred             cCcceeeeec
Confidence            4567666543

>KOG1273 consensus WD40 repeat protein [General function prediction only]

Probab=99.94  E-value=2e-25  Score=163.80  Aligned_cols=226  Identities=12%  Similarity=0.215  Sum_probs=171.1

Q ss_pred             EEEEECCCCCEEEEecCCCcEEEEeCCccccccccCCccccccCCCCceeecCCCCCCCCcccCCCCCcCcccccccccC
Q 021657           13 FALAMCPTEPYVLSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHED   92 (309)
Q Consensus        13 ~~~~~~~~~~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   92 (309)
                      .|+.|++.|.+||+|..||.|.|||+.+                                        ...-+.+.+|..
T Consensus        27 ~~~~Fs~~G~~lAvGc~nG~vvI~D~~T----------------------------------------~~iar~lsaH~~   66 (405)
T KOG1273|consen   27 ECCQFSRWGDYLAVGCANGRVVIYDFDT----------------------------------------FRIARMLSAHVR   66 (405)
T ss_pred             ceEEeccCcceeeeeccCCcEEEEEccc----------------------------------------cchhhhhhcccc
Confidence            6999999999999999999999999974                                        334566788999


Q ss_pred             CeEEEEEecCCCcEEEEEcCCCeEEEEEcCCCCcceEEEeeccCCceeEE------------------------------
Q 021657           93 TVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCV------------------------------  142 (309)
Q Consensus        93 ~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~------------------------------  142 (309)
                      +|++++|+++| +.|+|++.|..|.+||+..+..  .+.+. ..++|+..                              
T Consensus        67 pi~sl~WS~dg-r~LltsS~D~si~lwDl~~gs~--l~rir-f~spv~~~q~hp~k~n~~va~~~~~sp~vi~~s~~~h~  142 (405)
T KOG1273|consen   67 PITSLCWSRDG-RKLLTSSRDWSIKLWDLLKGSP--LKRIR-FDSPVWGAQWHPRKRNKCVATIMEESPVVIDFSDPKHS  142 (405)
T ss_pred             ceeEEEecCCC-CEeeeecCCceeEEEeccCCCc--eeEEE-ccCccceeeeccccCCeEEEEEecCCcEEEEecCCcee
Confidence            99999999999 8899999999999999988762  11110 11222222                              


Q ss_pred             -----------------EeccCCCCeEEEEcCCCcEEEEecCCCCCCCCCCceeeeccCC-CCeeEEEEecCCCcEEEEe
Q 021657          143 -----------------DWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGHS-AAVLCVQWSPDKSSVFGSS  204 (309)
Q Consensus       143 -----------------~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~-~~v~~~~~~~~~~~l~~~~  204 (309)
                                       .|.+ .|+++++|...|.+.++|..+      .+++..++-.. ..|.++-++..|+++ +.-
T Consensus       143 ~Lp~d~d~dln~sas~~~fdr-~g~yIitGtsKGkllv~~a~t------~e~vas~rits~~~IK~I~~s~~g~~l-iiN  214 (405)
T KOG1273|consen  143 VLPKDDDGDLNSSASHGVFDR-RGKYIITGTSKGKLLVYDAET------LECVASFRITSVQAIKQIIVSRKGRFL-IIN  214 (405)
T ss_pred             eccCCCccccccccccccccC-CCCEEEEecCcceEEEEecch------heeeeeeeechheeeeEEEEeccCcEE-EEe
Confidence                             2444 688999999999999999999      88888887666 789999999999974 588


Q ss_pred             cCCCcEEEEeCCcccccccCCCCCcCCCCceeeeecC--CCcceeeEEEccCCCeEEEEecCCCCCCCCCCeEEEEEccc
Q 021657          205 AEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAG--HRDKVVDFHWNASDPWTVVSVSDDCDSTGGGGTLQIWRMSD  282 (309)
Q Consensus       205 ~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~v~~~~~~~~~~~~~~s~s~d~~s~~~dg~v~vw~~~~  282 (309)
                      +.|..|+.|+++.-...-..      ....+...++.  ....-.++.|+.+|.++.++.+.-       ..++||.-. 
T Consensus       215 tsDRvIR~ye~~di~~~~r~------~e~e~~~K~qDvVNk~~Wk~ccfs~dgeYv~a~s~~a-------HaLYIWE~~-  280 (405)
T KOG1273|consen  215 TSDRVIRTYEISDIDDEGRD------GEVEPEHKLQDVVNKLQWKKCCFSGDGEYVCAGSARA-------HALYIWEKS-  280 (405)
T ss_pred             cCCceEEEEehhhhcccCcc------CCcChhHHHHHHHhhhhhhheeecCCccEEEeccccc-------eeEEEEecC-
Confidence            88999999998742111000      00111111111  123457788999999888754433       899999999 


Q ss_pred             cccCChhhHhHhhhccc-ceEEEeeeCC
Q 021657          283 LIYRPQDEVLAELEKFK-AHVISCTSKP  309 (309)
Q Consensus       283 ~~~~~~~~~~~~~~~h~-~~v~~~~~~P  309 (309)
                           .+.+++.+.|.+ ....++.|||
T Consensus       281 -----~GsLVKILhG~kgE~l~DV~whp  303 (405)
T KOG1273|consen  281 -----IGSLVKILHGTKGEELLDVNWHP  303 (405)
T ss_pred             -----CcceeeeecCCchhheeeccccc
Confidence                 788999998888 5678888887

>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]

Probab=99.94  E-value=5.7e-25  Score=161.89  Aligned_cols=263  Identities=17%  Similarity=0.327  Sum_probs=189.7

Q ss_pred             eEEEEECCCCCEEEEecCCCcEEEEeCCcccccccc------CCcccc----------------ccCCCCceeecCCCCC
Q 021657           12 EFALAMCPTEPYVLSGGKDKSVVLWSIQDHITSSAT------DPATAK----------------SAGSSGSIIKQSPKPG   69 (309)
Q Consensus        12 V~~~~~~~~~~~l~t~~~dg~i~vwd~~~~~~~~~~------~~~~~~----------------~~~~~~~~~~~~~~~~   69 (309)
                      ...+.|+|||..|++-+.|..+++|++.........      ......                ..........+.....
T Consensus        52 ~kgckWSPDGSciL~~sedn~l~~~nlP~dlys~~~~~~~~~~~~~~~r~~eg~tvydy~wYs~M~s~qP~t~l~a~ssr  131 (406)
T KOG2919|consen   52 LKGCKWSPDGSCILSLSEDNCLNCWNLPFDLYSKKADGPLNFSKHLSYRYQEGETVYDYCWYSRMKSDQPSTNLFAVSSR  131 (406)
T ss_pred             hccceeCCCCceEEeecccCeeeEEecChhhcccCCCCccccccceeEEeccCCEEEEEEeeeccccCCCccceeeeccc
Confidence            457899999999999999999999998654211110      000000                0111122233444566


Q ss_pred             CCCcccCCCCCcCccccccc--ccC---CeEEEEEecCCCcEEEEEcCCCeEEEEEc-CCCCcceEEEe-----eccCCc
Q 021657           70 DGNDKAADGPSVGPRGIYNG--HED---TVEDVTFCPSSAQEFCSVGDDSCLILWDA-RVGTSPVIKVE-----KAHDAD  138 (309)
Q Consensus        70 ~~~~~~~~~~~~~~~~~~~~--~~~---~v~~~~~~~~~~~~l~s~~~dg~i~iwd~-~~~~~~~~~~~-----~~~~~~  138 (309)
                      +.-|.+|+..+++....+.+  |..   ...+++|+||| ..|++| ....|+++|+ +.++.......     .+..+-
T Consensus       132 ~~PIh~wdaftG~lraSy~~ydh~de~taAhsL~Fs~DG-eqlfaG-ykrcirvFdt~RpGr~c~vy~t~~~~k~gq~gi  209 (406)
T KOG2919|consen  132 DQPIHLWDAFTGKLRASYRAYDHQDEYTAAHSLQFSPDG-EQLFAG-YKRCIRVFDTSRPGRDCPVYTTVTKGKFGQKGI  209 (406)
T ss_pred             cCceeeeeccccccccchhhhhhHHhhhhheeEEecCCC-CeEeec-ccceEEEeeccCCCCCCcchhhhhcccccccce
Confidence            78899999998887766654  333   34589999999 556655 5678999999 44442222222     233678


Q ss_pred             eeEEEeccCCCCeEEEEcCCCcEEEEecCCCCCCCCCCceeeeccCCCCeeEEEEecCCCcEEEEecCCCcEEEEeCCcc
Q 021657          139 LHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKV  218 (309)
Q Consensus       139 v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~dg~i~iwd~~~~  218 (309)
                      +.+++|+|.+...++.|+....+-||.-..      ..++..+.+|.+.|+.++|.++|+.++..+-.|-.|..||+|..
T Consensus       210 isc~a~sP~~~~~~a~gsY~q~~giy~~~~------~~pl~llggh~gGvThL~~~edGn~lfsGaRk~dkIl~WDiR~~  283 (406)
T KOG2919|consen  210 ISCFAFSPMDSKTLAVGSYGQRVGIYNDDG------RRPLQLLGGHGGGVTHLQWCEDGNKLFSGARKDDKILCWDIRYS  283 (406)
T ss_pred             eeeeeccCCCCcceeeecccceeeeEecCC------CCceeeecccCCCeeeEEeccCcCeecccccCCCeEEEEeehhc
Confidence            999999997778999999999999998887      88999999999999999999999998855556889999999985


Q ss_pred             cccccCCCCCcCCCCceeeeecCCCc---ceeeEEEccCCCeEEEEecCCCCCCCCCCeEEEEEccccccCChhhHhHhh
Q 021657          219 GKKVEQGPRTTNYPAGLFFQHAGHRD---KVVDFHWNASDPWTVVSVSDDCDSTGGGGTLQIWRMSDLIYRPQDEVLAEL  295 (309)
Q Consensus       219 ~~~~~~~~~~~~~~~~~~~~~~~~~~---~v~~~~~~~~~~~~~~s~s~d~~s~~~dg~v~vw~~~~~~~~~~~~~~~~~  295 (309)
                      +.+              ++.+..|..   .=.-....|++++|+        +|+.||.|++||++.     -+..+..+
T Consensus       284 ~~p--------------v~~L~rhv~~TNQRI~FDld~~~~~La--------sG~tdG~V~vwdlk~-----~gn~~sv~  336 (406)
T KOG2919|consen  284 RDP--------------VYALERHVGDTNQRILFDLDPKGEILA--------SGDTDGSVRVWDLKD-----LGNEVSVT  336 (406)
T ss_pred             cch--------------hhhhhhhccCccceEEEecCCCCceee--------ccCCCccEEEEecCC-----CCCccccc
Confidence            554              344444433   112345568777666        777889999999995     25566777


Q ss_pred             hcccceEEEeeeCC
Q 021657          296 EKFKAHVISCTSKP  309 (309)
Q Consensus       296 ~~h~~~v~~~~~~P  309 (309)
                      ..|...|..++++|
T Consensus       337 ~~~sd~vNgvslnP  350 (406)
T KOG2919|consen  337 GNYSDTVNGVSLNP  350 (406)
T ss_pred             ccccccccceecCc
Confidence            88899999999987

>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]

Probab=99.94  E-value=4.1e-25  Score=160.37  Aligned_cols=245  Identities=17%  Similarity=0.234  Sum_probs=183.0

Q ss_pred             CCCCcceEEEEECCCC-----CEEEEecCCCcEEEEeCCccccccccCCccccccCCCCceeecCCCCCCCCcccCCCCC
Q 021657            6 GHQDNAEFALAMCPTE-----PYVLSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPS   80 (309)
Q Consensus         6 ~H~~~~V~~~~~~~~~-----~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (309)
                      .|.- +++.+.|.|+.     .+|||.+  ..+|+|.+............                           +. 
T Consensus        94 d~~Y-P~tK~~wiPd~~g~~pdlLATs~--D~LRlWri~~ee~~~~~~~~---------------------------L~-  142 (364)
T KOG0290|consen   94 DHPY-PVTKLMWIPDSKGVYPDLLATSS--DFLRLWRIGDEESRVELQSV---------------------------LN-  142 (364)
T ss_pred             CCCC-CccceEecCCccccCcchhhccc--CeEEEEeccCcCCceehhhh---------------------------hc-
Confidence            4666 78999999976     3466554  48999998743111111000                           00 


Q ss_pred             cCcccccccccCCeEEEEEecCCCcEEEEEcCCCeEEEEEcCCCC-cceEEEeeccCCceeEEEeccCCCCeEEEEcCCC
Q 021657           81 VGPRGIYNGHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGT-SPVIKVEKAHDADLHCVDWNPLDDNLILTGSADN  159 (309)
Q Consensus        81 ~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~-~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg  159 (309)
                         ...-..+..++++..|+.-+.+++.+++-|-+..|||++++. ..+...+.+|..+|..++|.....+.|++.+.||
T Consensus       143 ---~~kns~~~aPlTSFDWne~dp~~igtSSiDTTCTiWdie~~~~~~vkTQLIAHDKEV~DIaf~~~s~~~FASvgaDG  219 (364)
T KOG0290|consen  143 ---NNKNSEFCAPLTSFDWNEVDPNLIGTSSIDTTCTIWDIETGVSGTVKTQLIAHDKEVYDIAFLKGSRDVFASVGADG  219 (364)
T ss_pred             ---cCcccccCCcccccccccCCcceeEeecccCeEEEEEEeeccccceeeEEEecCcceeEEEeccCccceEEEecCCC
Confidence               001123567999999998888999999999999999999873 2245667799999999999985567999999999


Q ss_pred             cEEEEecCCCCCCCCCCceeeeccCCCCeeEEEEecCCCcEEEEecCC-CcEEEEeCCcccccccCCCCCcCCCCceeee
Q 021657          160 SVRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAED-GLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQ  238 (309)
Q Consensus       160 ~i~i~d~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~d-g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~  238 (309)
                      .+|+||+|...-   ...+.+-.....+...++|+++..+++|+-..| ..|.|.|+|.+              ..++..
T Consensus       220 SvRmFDLR~leH---STIIYE~p~~~~pLlRLswnkqDpnymATf~~dS~~V~iLDiR~P--------------~tpva~  282 (364)
T KOG0290|consen  220 SVRMFDLRSLEH---STIIYEDPSPSTPLLRLSWNKQDPNYMATFAMDSNKVVILDIRVP--------------CTPVAR  282 (364)
T ss_pred             cEEEEEeccccc---ceEEecCCCCCCcceeeccCcCCchHHhhhhcCCceEEEEEecCC--------------Ccceeh
Confidence            999999998432   223333333356889999999888777765554 56999999983              446778


Q ss_pred             ecCCCcceeeEEEccCCCeEEEEecCCCCCCCCCCeEEEEEccccccCChhhHhHhhhcccceEEEeeeCC
Q 021657          239 HAGHRDKVVDFHWNASDPWTVVSVSDDCDSTGGGGTLQIWRMSDLIYRPQDEVLAELEKFKAHVISCTSKP  309 (309)
Q Consensus       239 ~~~~~~~v~~~~~~~~~~~~~~s~s~d~~s~~~dg~v~vw~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~P  309 (309)
                      +.+|...|++++|.|.....++++++|       ..+.+||+......+...++-... -.+.|..++|+|
T Consensus       283 L~~H~a~VNgIaWaPhS~~hictaGDD-------~qaliWDl~q~~~~~~~dPilay~-a~~EVNqi~Ws~  345 (364)
T KOG0290|consen  283 LRNHQASVNGIAWAPHSSSHICTAGDD-------CQALIWDLQQMPRENGEDPILAYT-AGGEVNQIQWSS  345 (364)
T ss_pred             hhcCcccccceEecCCCCceeeecCCc-------ceEEEEecccccccCCCCchhhhh-ccceeeeeeecc
Confidence            999999999999999998888866666       899999999766544555666565 567899998875

>KOG2055 consensus WD40 repeat protein [General function prediction only]

Probab=99.93  E-value=3e-24  Score=164.94  Aligned_cols=229  Identities=11%  Similarity=0.237  Sum_probs=183.3

Q ss_pred             ceEEEEECCCCCEEEEecCCCcEEEEeCCccccccccCCccccccCCCCceeecCCCCCCCCcccCCCCCcCcccccccc
Q 021657           11 AEFALAMCPTEPYVLSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGH   90 (309)
Q Consensus        11 ~V~~~~~~~~~~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   90 (309)
                      .|+++.|+|..++|++|+.||+++||.++..                                      ....++.+.-.
T Consensus       215 ~I~sv~FHp~~plllvaG~d~~lrifqvDGk--------------------------------------~N~~lqS~~l~  256 (514)
T KOG2055|consen  215 GITSVQFHPTAPLLLVAGLDGTLRIFQVDGK--------------------------------------VNPKLQSIHLE  256 (514)
T ss_pred             CceEEEecCCCceEEEecCCCcEEEEEecCc--------------------------------------cChhheeeeec
Confidence            6999999999999999999999999999753                                      22234444445


Q ss_pred             cCCeEEEEEecCCCcEEEEEcCCCeEEEEEcCCCCcceEEEeeccC-CceeEEEeccCCCCeEEEEcCCCcEEEEecCCC
Q 021657           91 EDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPVIKVEKAHD-ADLHCVDWNPLDDNLILTGSADNSVRMFDRRNL  169 (309)
Q Consensus        91 ~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~-~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~  169 (309)
                      ..+|.+.+|.|+|...+++++....++.||+.+.+...+....++. ..+.....+| ++++++..+..|.|.+....+ 
T Consensus       257 ~fPi~~a~f~p~G~~~i~~s~rrky~ysyDle~ak~~k~~~~~g~e~~~~e~FeVSh-d~~fia~~G~~G~I~lLhakT-  334 (514)
T KOG2055|consen  257 KFPIQKAEFAPNGHSVIFTSGRRKYLYSYDLETAKVTKLKPPYGVEEKSMERFEVSH-DSNFIAIAGNNGHIHLLHAKT-  334 (514)
T ss_pred             cCccceeeecCCCceEEEecccceEEEEeeccccccccccCCCCcccchhheeEecC-CCCeEEEcccCceEEeehhhh-
Confidence            6789999999999658999999999999999988854455555544 3577888999 999999999999999999998 


Q ss_pred             CCCCCCCceeeeccCCCCeeEEEEecCCCcEEEEecCCCcEEEEeCCcccccccCCCCCcCCCCceeeeecCCC-cceee
Q 021657          170 TSNGVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHR-DKVVD  248 (309)
Q Consensus       170 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~v~~  248 (309)
                           ++.+..++ -.+.|..++|+.+++.|+ +.+.+|.|.+||++..               .++..+.... -.-++
T Consensus       335 -----~eli~s~K-ieG~v~~~~fsSdsk~l~-~~~~~GeV~v~nl~~~---------------~~~~rf~D~G~v~gts  392 (514)
T KOG2055|consen  335 -----KELITSFK-IEGVVSDFTFSSDSKELL-ASGGTGEVYVWNLRQN---------------SCLHRFVDDGSVHGTS  392 (514)
T ss_pred             -----hhhhheee-eccEEeeEEEecCCcEEE-EEcCCceEEEEecCCc---------------ceEEEEeecCccceee
Confidence                 88888887 467899999999999766 5556899999999983               2333333211 12366


Q ss_pred             EEEccCCCeEEEEecCCCCCCCCCCeEEEEEccccccCChhhHhHhhhcccceEEEeeeCC
Q 021657          249 FHWNASDPWTVVSVSDDCDSTGGGGTLQIWRMSDLIYRPQDEVLAELEKFKAHVISCTSKP  309 (309)
Q Consensus       249 ~~~~~~~~~~~~s~s~d~~s~~~dg~v~vw~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~P  309 (309)
                      ++.++++.+ +|       +|+..|.|.|||.++-......++++++..-...|.++.|+|
T Consensus       393 ~~~S~ng~y-lA-------~GS~~GiVNIYd~~s~~~s~~PkPik~~dNLtt~Itsl~Fn~  445 (514)
T KOG2055|consen  393 LCISLNGSY-LA-------TGSDSGIVNIYDGNSCFASTNPKPIKTVDNLTTAITSLQFNH  445 (514)
T ss_pred             eeecCCCce-EE-------eccCcceEEEeccchhhccCCCCchhhhhhhheeeeeeeeCc
Confidence            777887775 55       444559999999888777778899999999999999999986

>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]

Probab=99.93  E-value=2e-24  Score=156.71  Aligned_cols=244  Identities=20%  Similarity=0.356  Sum_probs=175.3

Q ss_pred             ccCCCCCcceEEEEECCCC-CEEEEecCC-------CcEEEEeCCccccccccCCccccccCCCCceeecCCCCCCCCcc
Q 021657            3 ILTGHQDNAEFALAMCPTE-PYVLSGGKD-------KSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDK   74 (309)
Q Consensus         3 ~l~~H~~~~V~~~~~~~~~-~~l~t~~~d-------g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   74 (309)
                      .|..|.+ .|+.++-+|.. +.|+|+..+       -.+-||.+.......                             
T Consensus        58 vf~h~ag-Evw~las~P~d~~ilaT~yn~~s~s~vl~~aaiw~ipe~~~~S-----------------------------  107 (370)
T KOG1007|consen   58 VFFHHAG-EVWDLASSPFDQRILATVYNDTSDSGVLTGAAIWQIPEPLGQS-----------------------------  107 (370)
T ss_pred             hhhcCCc-ceehhhcCCCCCceEEEEEeccCCCcceeeEEEEecccccCcc-----------------------------
Confidence            4555666 89999999954 456665442       246788887542221                             


Q ss_pred             cCCCCCcCcccccc-cccCCeEEEEEecCCCcEEEEEcCCCeEEEEEcCCCCcceEEE----eeccCCceeEEEecc-CC
Q 021657           75 AADGPSVGPRGIYN-GHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPVIKV----EKAHDADLHCVDWNP-LD  148 (309)
Q Consensus        75 ~~~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~----~~~~~~~v~~~~~~~-~~  148 (309)
                        ...+.+.+..+. .+-+.|.|+.|.|++ ..+++-. |..|.+|++..........    -..+....++-+|+| .+
T Consensus       108 --~~~tlE~v~~Ldteavg~i~cvew~Pns-~klasm~-dn~i~l~~l~ess~~vaev~ss~s~e~~~~ftsg~WspHHd  183 (370)
T KOG1007|consen  108 --NSSTLECVASLDTEAVGKINCVEWEPNS-DKLASMD-DNNIVLWSLDESSKIVAEVLSSESAEMRHSFTSGAWSPHHD  183 (370)
T ss_pred             --ccchhhHhhcCCHHHhCceeeEEEcCCC-CeeEEec-cCceEEEEcccCcchheeecccccccccceecccccCCCCc
Confidence              112334444454 455689999999988 5566544 7899999998766311111    123456778889998 46


Q ss_pred             CCeEEEEcCCCcEEEEecCCCCCCCCCCceeee-ccCCCCeeEEEEecCCCcEEEEecCCCcEEEEeCCcccccccCCCC
Q 021657          149 DNLILTGSADNSVRMFDRRNLTSNGVGSPINKF-EGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPR  227 (309)
Q Consensus       149 ~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~-~~~~~~v~~~~~~~~~~~l~~~~~~dg~i~iwd~~~~~~~~~~~~~  227 (309)
                      ++.+++. .|+++..||+|++      .....+ ..|...|..+.|+|+.+++|++|++||.|+|||.|+.+        
T Consensus       184 gnqv~tt-~d~tl~~~D~RT~------~~~~sI~dAHgq~vrdlDfNpnkq~~lvt~gDdgyvriWD~R~tk--------  248 (370)
T KOG1007|consen  184 GNQVATT-SDSTLQFWDLRTM------KKNNSIEDAHGQRVRDLDFNPNKQHILVTCGDDGYVRIWDTRKTK--------  248 (370)
T ss_pred             cceEEEe-CCCcEEEEEccch------hhhcchhhhhcceeeeccCCCCceEEEEEcCCCccEEEEeccCCC--------
Confidence            6777765 6899999999984      444444 56788899999999999999999999999999999843        


Q ss_pred             CcCCCCceeeeecCCCcceeeEEEccCCCeEEEEecCCCCCCCCCCeEEEEEcccccc--------------------C-
Q 021657          228 TTNYPAGLFFQHAGHRDKVVDFHWNASDPWTVVSVSDDCDSTGGGGTLQIWRMSDLIY--------------------R-  286 (309)
Q Consensus       228 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~s~d~~s~~~dg~v~vw~~~~~~~--------------------~-  286 (309)
                            .+++++.+|..+|+++.|+|.-..|++++       |.|..|.+|....-.-                    + 
T Consensus       249 ------~pv~el~~HsHWvW~VRfn~~hdqLiLs~-------~SDs~V~Lsca~svSSE~qi~~~~dese~e~~dseer~  315 (370)
T KOG1007|consen  249 ------FPVQELPGHSHWVWAVRFNPEHDQLILSG-------GSDSAVNLSCASSVSSEQQIEFEDDESESEDEDSEERV  315 (370)
T ss_pred             ------ccccccCCCceEEEEEEecCccceEEEec-------CCCceeEEEeccccccccccccccccccCcchhhHHhc
Confidence                  35678899999999999999888888854       4558898887654310                    0 


Q ss_pred             --ChhhHhHhhhcccceEEEeeeC
Q 021657          287 --PQDEVLAELEKFKAHVISCTSK  308 (309)
Q Consensus       287 --~~~~~~~~~~~h~~~v~~~~~~  308 (309)
                        -....+.++..|.+.|++++|+
T Consensus       316 kpL~dg~l~tydehEDSVY~~aWS  339 (370)
T KOG1007|consen  316 KPLQDGQLETYDEHEDSVYALAWS  339 (370)
T ss_pred             ccccccccccccccccceEEEeec
Confidence              0112455788999999999997

>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]

Probab=99.93  E-value=2.9e-24  Score=155.90  Aligned_cols=226  Identities=23%  Similarity=0.385  Sum_probs=173.3

Q ss_pred             CCCCcceEEEEECCCCCEEEEecCCCcEEEEeCCccccccccCCccccccCCCCceeecCCCCCCCCcccCCCCCcCccc
Q 021657            6 GHQDNAEFALAMCPTEPYVLSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRG   85 (309)
Q Consensus         6 ~H~~~~V~~~~~~~~~~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   85 (309)
                      .|.+ .|.|+.|.|++..|++-. |..|.+|+++..........                                  ..
T Consensus       121 eavg-~i~cvew~Pns~klasm~-dn~i~l~~l~ess~~vaev~----------------------------------ss  164 (370)
T KOG1007|consen  121 EAVG-KINCVEWEPNSDKLASMD-DNNIVLWSLDESSKIVAEVL----------------------------------SS  164 (370)
T ss_pred             HHhC-ceeeEEEcCCCCeeEEec-cCceEEEEcccCcchheeec----------------------------------cc
Confidence            4555 789999999999998877 88999999986432111000                                  00


Q ss_pred             ccccccCCeEEEEEecC-CCcEEEEEcCCCeEEEEEcCCCCcceEEEeeccCCceeEEEeccCCCCeEEEEcCCCcEEEE
Q 021657           86 IYNGHEDTVEDVTFCPS-SAQEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMF  164 (309)
Q Consensus        86 ~~~~~~~~v~~~~~~~~-~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~  164 (309)
                      .-.++....++-+|+|. ..+.+++ ..|+++..||+++..+ ......+|...|..+.|+|+...+|++++.||.|+||
T Consensus       165 ~s~e~~~~ftsg~WspHHdgnqv~t-t~d~tl~~~D~RT~~~-~~sI~dAHgq~vrdlDfNpnkq~~lvt~gDdgyvriW  242 (370)
T KOG1007|consen  165 ESAEMRHSFTSGAWSPHHDGNQVAT-TSDSTLQFWDLRTMKK-NNSIEDAHGQRVRDLDFNPNKQHILVTCGDDGYVRIW  242 (370)
T ss_pred             ccccccceecccccCCCCccceEEE-eCCCcEEEEEccchhh-hcchhhhhcceeeeccCCCCceEEEEEcCCCccEEEE
Confidence            11125667788899983 2255555 4688999999998763 4455568889999999999666789999999999999


Q ss_pred             ecCCCCCCCCCCceeeeccCCCCeeEEEEecCCCcEEEEecCCCcEEEEeCCcccccccCC--------------CCCcC
Q 021657          165 DRRNLTSNGVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQG--------------PRTTN  230 (309)
Q Consensus       165 d~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~dg~i~iwd~~~~~~~~~~~--------------~~~~~  230 (309)
                      |.|+.     ..++.++.+|...|.++.|+|....|+.+|+.|..|.+|....-....+..              ++..+
T Consensus       243 D~R~t-----k~pv~el~~HsHWvW~VRfn~~hdqLiLs~~SDs~V~Lsca~svSSE~qi~~~~dese~e~~dseer~kp  317 (370)
T KOG1007|consen  243 DTRKT-----KFPVQELPGHSHWVWAVRFNPEHDQLILSGGSDSAVNLSCASSVSSEQQIEFEDDESESEDEDSEERVKP  317 (370)
T ss_pred             eccCC-----CccccccCCCceEEEEEEecCccceEEEecCCCceeEEEeccccccccccccccccccCcchhhHHhccc
Confidence            99985     678999999999999999999888899999999999999876533111111              01111


Q ss_pred             CCCceeeeecCCCcceeeEEEccCCCeEEEEecCCCCCCCCCCeEEEEEcc
Q 021657          231 YPAGLFFQHAGHRDKVVDFHWNASDPWTVVSVSDDCDSTGGGGTLQIWRMS  281 (309)
Q Consensus       231 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~s~d~~s~~~dg~v~vw~~~  281 (309)
                      -+...+.++..|...|++++|+.-+++++|+-|.|       |.+.|=++.
T Consensus       318 L~dg~l~tydehEDSVY~~aWSsadPWiFASLSYD-------GRviIs~V~  361 (370)
T KOG1007|consen  318 LQDGQLETYDEHEDSVYALAWSSADPWIFASLSYD-------GRVIISSVP  361 (370)
T ss_pred             ccccccccccccccceEEEeeccCCCeeEEEeccC-------ceEEeecCC
Confidence            23345667889999999999999999999999888       999988876

>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]

Probab=99.93  E-value=1.3e-24  Score=168.73  Aligned_cols=260  Identities=17%  Similarity=0.186  Sum_probs=197.1

Q ss_pred             eEEEEECCCCCE-EEEecCCCcEEEEeCCccc---ccccc-CCccccccCCCCceeecCCCCCCCCcccCCCCCcCcccc
Q 021657           12 EFALAMCPTEPY-VLSGGKDKSVVLWSIQDHI---TSSAT-DPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGI   86 (309)
Q Consensus        12 V~~~~~~~~~~~-l~t~~~dg~i~vwd~~~~~---~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   86 (309)
                      |.+++|+....+ +++.+.|..+++|.-....   ..... ......+......-.....+...+.+.+|+.......+.
T Consensus        37 ~~s~~w~~~n~lvvas~~gdk~~~~~~K~g~~~~Vp~~~k~~gd~~~Cv~~~s~S~y~~sgG~~~~Vkiwdl~~kl~hr~  116 (673)
T KOG4378|consen   37 DFSFNWQRRNFLVVASMAGDKVMRIKEKDGKTPEVPRVRKLTGDNAFCVACASQSLYEISGGQSGCVKIWDLRAKLIHRF  116 (673)
T ss_pred             ceeeeccccceEEEeecCCceeEEEecccCCCCccceeeccccchHHHHhhhhcceeeeccCcCceeeehhhHHHHHhhh
Confidence            788999876643 4456679999999866541   11111 011111222222234555566788999999998888899


Q ss_pred             cccccCCeEEEEEecCCCcEEEEEcCCCeEEEEEcCCCCcceEEEeecc-CCceeEEEeccCCCCeEEEEcCCCcEEEEe
Q 021657           87 YNGHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPVIKVEKAH-DADLHCVDWNPLDDNLILTGSADNSVRMFD  165 (309)
Q Consensus        87 ~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~-~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d  165 (309)
                      +++|+..|+++.++..+ .+||+++..|.|.|..+.++.  ....+... ...|.-+.|+|....+|.+++.+|.|.+||
T Consensus       117 lkdh~stvt~v~YN~~D-eyiAsvs~gGdiiih~~~t~~--~tt~f~~~sgqsvRll~ys~skr~lL~~asd~G~VtlwD  193 (673)
T KOG4378|consen  117 LKDHQSTVTYVDYNNTD-EYIASVSDGGDIIIHGTKTKQ--KTTTFTIDSGQSVRLLRYSPSKRFLLSIASDKGAVTLWD  193 (673)
T ss_pred             ccCCcceeEEEEecCCc-ceeEEeccCCcEEEEecccCc--cccceecCCCCeEEEeecccccceeeEeeccCCeEEEEe
Confidence            99999999999999887 889999999999999998877  34444333 345678999995556778889999999999


Q ss_pred             cCCCCCCCCCCcee-eeccCCCCeeEEEEecCCCcEEEEecCCCcEEEEeCCcccccccCCCCCcCCCCceeeeecCCCc
Q 021657          166 RRNLTSNGVGSPIN-KFEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRD  244 (309)
Q Consensus       166 ~~~~~~~~~~~~~~-~~~~~~~~v~~~~~~~~~~~l~~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  244 (309)
                      ...      ..++. ..+.|+.+...|+|+|..+.||++-+.|..|.+||++....                ........
T Consensus       194 v~g------~sp~~~~~~~HsAP~~gicfspsne~l~vsVG~Dkki~~yD~~s~~s----------------~~~l~y~~  251 (673)
T KOG4378|consen  194 VQG------MSPIFHASEAHSAPCRGICFSPSNEALLVSVGYDKKINIYDIRSQAS----------------TDRLTYSH  251 (673)
T ss_pred             ccC------CCcccchhhhccCCcCcceecCCccceEEEecccceEEEeecccccc----------------cceeeecC
Confidence            997      44444 44679999999999999999999999999999999986211                11122455


Q ss_pred             ceeeEEEccCCCeEEEEecCCCCCCCCCCeEEEEEccccccCChhhHhHhhhcccceEEEeeeCC
Q 021657          245 KVVDFHWNASDPWTVVSVSDDCDSTGGGGTLQIWRMSDLIYRPQDEVLAELEKFKAHVISCTSKP  309 (309)
Q Consensus       245 ~v~~~~~~~~~~~~~~s~s~d~~s~~~dg~v~vw~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~P  309 (309)
                      +...++|.++|.+|.        .|...|.|..||++.     ...++..+..|...|++++|.|
T Consensus       252 Plstvaf~~~G~~L~--------aG~s~G~~i~YD~R~-----~k~Pv~v~sah~~sVt~vafq~  303 (673)
T KOG4378|consen  252 PLSTVAFSECGTYLC--------AGNSKGELIAYDMRS-----TKAPVAVRSAHDASVTRVAFQP  303 (673)
T ss_pred             CcceeeecCCceEEE--------eecCCceEEEEeccc-----CCCCceEeeecccceeEEEeee
Confidence            789999999887665        445559999999995     6788999999999999999976

>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.93  E-value=1.5e-25  Score=189.37  Aligned_cols=215  Identities=18%  Similarity=0.395  Sum_probs=176.0

Q ss_pred             CcccCCCCCcceEEEEECCCCC-EEEEecCCCcEEEEeCCccccccccCCccccccCCCCceeecCCCCCCCCcccCCCC
Q 021657            1 MEILTGHQDNAEFALAMCPTEP-YVLSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGP   79 (309)
Q Consensus         1 l~~l~~H~~~~V~~~~~~~~~~-~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   79 (309)
                      |.+++-|++ +|..+.|++.+. +||+|+.||.|.|||+.+........                               
T Consensus       109 la~~~~h~G-~V~gLDfN~~q~nlLASGa~~geI~iWDlnn~~tP~~~~-------------------------------  156 (1049)
T KOG0307|consen  109 LATKSKHTG-PVLGLDFNPFQGNLLASGADDGEILIWDLNKPETPFTPG-------------------------------  156 (1049)
T ss_pred             HhhhcccCC-ceeeeeccccCCceeeccCCCCcEEEeccCCcCCCCCCC-------------------------------
Confidence            356788999 899999999755 99999999999999998642222111                               


Q ss_pred             CcCcccccccccCCeEEEEEecCCCcEEEEEcCCCeEEEEEcCCCCcceEEEeeccC--CceeEEEeccCCCCeEEEEcC
Q 021657           80 SVGPRGIYNGHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPVIKVEKAHD--ADLHCVDWNPLDDNLILTGSA  157 (309)
Q Consensus        80 ~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~--~~v~~~~~~~~~~~~l~~~~~  157 (309)
                             -....+.|.+++|+..-.++|++++.+|.+.|||++..+  .+..+..+.  ..+..++|+|.....+++++.
T Consensus       157 -------~~~~~~eI~~lsWNrkvqhILAS~s~sg~~~iWDlr~~~--pii~ls~~~~~~~~S~l~WhP~~aTql~~As~  227 (1049)
T KOG0307|consen  157 -------SQAPPSEIKCLSWNRKVSHILASGSPSGRAVIWDLRKKK--PIIKLSDTPGRMHCSVLAWHPDHATQLLVASG  227 (1049)
T ss_pred             -------CCCCcccceEeccchhhhHHhhccCCCCCceeccccCCC--cccccccCCCccceeeeeeCCCCceeeeeecC
Confidence                   112356899999998877899999999999999999876  333443333  358899999966677888777


Q ss_pred             CC---cEEEEecCCCCCCCCCCceeeeccCCCCeeEEEEecCCCcEEEEecCCCcEEEEeCCcccccccCCCCCcCCCCc
Q 021657          158 DN---SVRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAG  234 (309)
Q Consensus       158 dg---~i~i~d~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~  234 (309)
                      |.   .|.+||+|..     ..+++.+++|...|.++.|++.+..++++++.|+.|.+|+.++               .+
T Consensus       228 dd~~PviqlWDlR~a-----ssP~k~~~~H~~GilslsWc~~D~~lllSsgkD~~ii~wN~~t---------------gE  287 (1049)
T KOG0307|consen  228 DDSAPVIQLWDLRFA-----SSPLKILEGHQRGILSLSWCPQDPRLLLSSGKDNRIICWNPNT---------------GE  287 (1049)
T ss_pred             CCCCceeEeeccccc-----CCchhhhcccccceeeeccCCCCchhhhcccCCCCeeEecCCC---------------ce
Confidence            64   6899999985     6788899999999999999999977788999999999999998               45


Q ss_pred             eeeeecCCCcceeeEEEccCCCeEEEEecCCCCCCCCCCeEEEEEcccc
Q 021657          235 LFFQHAGHRDKVVDFHWNASDPWTVVSVSDDCDSTGGGGTLQIWRMSDL  283 (309)
Q Consensus       235 ~~~~~~~~~~~v~~~~~~~~~~~~~~s~s~d~~s~~~dg~v~vw~~~~~  283 (309)
                      .+..+....+++..+.|+|..+.+++.+|.|       |.|.|+.+...
T Consensus       288 vl~~~p~~~nW~fdv~w~pr~P~~~A~asfd-------gkI~I~sl~~~  329 (1049)
T KOG0307|consen  288 VLGELPAQGNWCFDVQWCPRNPSVMAAASFD-------GKISIYSLQGT  329 (1049)
T ss_pred             EeeecCCCCcceeeeeecCCCcchhhhheec-------cceeeeeeecC
Confidence            6667777888999999999999899877777       99999999853

>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein

Probab=99.93  E-value=1.6e-23  Score=166.00  Aligned_cols=263  Identities=8%  Similarity=0.082  Sum_probs=176.4

Q ss_pred             cccCCCCCcceEEEEECCCCCEE-EEecCCCcEEEEeCCccccccccCC---ccccccCCCCceeecCCCCCCCCcccCC
Q 021657            2 EILTGHQDNAEFALAMCPTEPYV-LSGGKDKSVVLWSIQDHITSSATDP---ATAKSAGSSGSIIKQSPKPGDGNDKAAD   77 (309)
Q Consensus         2 ~~l~~H~~~~V~~~~~~~~~~~l-~t~~~dg~i~vwd~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~   77 (309)
                      +.+.+|..  +.+++|+|+++.+ ++++.++.|++||..++........   ............. +.....++.+.+|+
T Consensus        25 ~~~~~~~~--~~~l~~~~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~g~~l-~~~~~~~~~l~~~d  101 (300)
T TIGR03866        25 RTFPVGQR--PRGITLSKDGKLLYVCASDSDTIQVIDLATGEVIGTLPSGPDPELFALHPNGKIL-YIANEDDNLVTVID  101 (300)
T ss_pred             EEEECCCC--CCceEECCCCCEEEEEECCCCeEEEEECCCCcEEEeccCCCCccEEEECCCCCEE-EEEcCCCCeEEEEE
Confidence            34555544  5689999999876 5778899999999987643322111   1111111222222 22223456889999


Q ss_pred             CCCcCcccccccccCCeEEEEEecCCCcEEEEEcCCC-eEEEEEcCCCCcceEEEeeccCCceeEEEeccCCCCeEEEE-
Q 021657           78 GPSVGPRGIYNGHEDTVEDVTFCPSSAQEFCSVGDDS-CLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTG-  155 (309)
Q Consensus        78 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg-~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~-  155 (309)
                      ..+.+.+..+.. ...+.+++|+|++ .+++++..++ .+.+||..+++  ...... ....+.+++|+| ++++++++ 
T Consensus       102 ~~~~~~~~~~~~-~~~~~~~~~~~dg-~~l~~~~~~~~~~~~~d~~~~~--~~~~~~-~~~~~~~~~~s~-dg~~l~~~~  175 (300)
T TIGR03866       102 IETRKVLAEIPV-GVEPEGMAVSPDG-KIVVNTSETTNMAHFIDTKTYE--IVDNVL-VDQRPRFAEFTA-DGKELWVSS  175 (300)
T ss_pred             CCCCeEEeEeeC-CCCcceEEECCCC-CEEEEEecCCCeEEEEeCCCCe--EEEEEE-cCCCccEEEECC-CCCEEEEEc
Confidence            887766655542 3346889999998 6777777664 56778987765  333222 234567899999 88877544 


Q ss_pred             cCCCcEEEEecCCCCCCCCCCceeeeccCC-------CCeeEEEEecCCCcEEEEecCCCcEEEEeCCcccccccCCCCC
Q 021657          156 SADNSVRMFDRRNLTSNGVGSPINKFEGHS-------AAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRT  228 (309)
Q Consensus       156 ~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~-------~~v~~~~~~~~~~~l~~~~~~dg~i~iwd~~~~~~~~~~~~~~  228 (309)
                      ..++.|++||+++      ++.+..+..+.       .....++|+|++++++++.+.++.+.+||+++ .+        
T Consensus       176 ~~~~~v~i~d~~~------~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~~~~~~~~~~~i~v~d~~~-~~--------  240 (300)
T TIGR03866       176 EIGGTVSVIDVAT------RKVIKKITFEIPGVHPEAVQPVGIKLTKDGKTAFVALGPANRVAVVDAKT-YE--------  240 (300)
T ss_pred             CCCCEEEEEEcCc------ceeeeeeeecccccccccCCccceEECCCCCEEEEEcCCCCeEEEEECCC-Cc--------
Confidence            5689999999998      66555543211       12346889999998666666678899999976 21        


Q ss_pred             cCCCCceeeeecCCCcceeeEEEccCCCeEEEEecCCCCCCCCCCeEEEEEccccccCChhhHhHhhhcccceEEEeeeC
Q 021657          229 TNYPAGLFFQHAGHRDKVVDFHWNASDPWTVVSVSDDCDSTGGGGTLQIWRMSDLIYRPQDEVLAELEKFKAHVISCTSK  308 (309)
Q Consensus       229 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~s~d~~s~~~dg~v~vw~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~  308 (309)
                            ..... .+...+.+++|+|++.+++++.+.+       |.|++||+.      +++++.+++. ....+.++++
T Consensus       241 ------~~~~~-~~~~~~~~~~~~~~g~~l~~~~~~~-------~~i~v~d~~------~~~~~~~~~~-~~~~~~~~~~  299 (300)
T TIGR03866       241 ------VLDYL-LVGQRVWQLAFTPDEKYLLTTNGVS-------NDVSVIDVA------ALKVIKSIKV-GRLPWGVVVR  299 (300)
T ss_pred             ------EEEEE-EeCCCcceEEECCCCCEEEEEcCCC-------CeEEEEECC------CCcEEEEEEc-ccccceeEeC
Confidence                  12111 2344688999999999887544444       999999999      7888888874 4566999988


Q ss_pred             C
Q 021657          309 P  309 (309)
Q Consensus       309 P  309 (309)
                      |
T Consensus       300 ~  300 (300)
T TIGR03866       300 P  300 (300)
T ss_pred             C
Confidence            7

Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.

>KOG0646 consensus WD40 repeat protein [General function prediction only]

Probab=99.93  E-value=2.9e-24  Score=165.20  Aligned_cols=206  Identities=19%  Similarity=0.399  Sum_probs=163.3

Q ss_pred             cccCCCCCcceEEEEECCCCCEEEEecCCCcEEEEeCCccccccccCCccccccCCCCceeecCCCCCCCCcccCCCCCc
Q 021657            2 EILTGHQDNAEFALAMCPTEPYVLSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSV   81 (309)
Q Consensus         2 ~~l~~H~~~~V~~~~~~~~~~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (309)
                      ..+.+|.. .|+|+.|+-||.+|+|||.||.|.+|++-......                               +..+.
T Consensus       117 ~v~~aHYQ-~ITcL~fs~dgs~iiTgskDg~V~vW~l~~lv~a~-------------------------------~~~~~  164 (476)
T KOG0646|consen  117 NVLSAHYQ-SITCLKFSDDGSHIITGSKDGAVLVWLLTDLVSAD-------------------------------NDHSV  164 (476)
T ss_pred             HHHHhhcc-ceeEEEEeCCCcEEEecCCCccEEEEEEEeecccc-------------------------------cCCCc
Confidence            46789999 89999999999999999999999999986421110                               11145


Q ss_pred             CcccccccccCCeEEEEEecCC-CcEEEEEcCCCeEEEEEcCCCCcceEEEeeccCCceeEEEeccCCCCeEEEEcCCCc
Q 021657           82 GPRGIYNGHEDTVEDVTFCPSS-AQEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNS  160 (309)
Q Consensus        82 ~~~~~~~~~~~~v~~~~~~~~~-~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~  160 (309)
                      +++..+..|+-+|+++...+-+ ..+++|++.|.++++||+..+.  ....+ ..+..+.+++.+| .+..+++|+.+|.
T Consensus       165 ~p~~~f~~HtlsITDl~ig~Gg~~~rl~TaS~D~t~k~wdlS~g~--LLlti-~fp~si~av~lDp-ae~~~yiGt~~G~  240 (476)
T KOG0646|consen  165 KPLHIFSDHTLSITDLQIGSGGTNARLYTASEDRTIKLWDLSLGV--LLLTI-TFPSSIKAVALDP-AERVVYIGTEEGK  240 (476)
T ss_pred             cceeeeccCcceeEEEEecCCCccceEEEecCCceEEEEEeccce--eeEEE-ecCCcceeEEEcc-cccEEEecCCcce
Confidence            6788899999999999987642 3579999999999999999887  44443 4578899999999 9999999999999


Q ss_pred             EEEEecCCCCC--C--------CCCCceeeeccCCC--CeeEEEEecCCCcEEEEecCCCcEEEEeCCcccccccCCCCC
Q 021657          161 VRMFDRRNLTS--N--------GVGSPINKFEGHSA--AVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRT  228 (309)
Q Consensus       161 i~i~d~~~~~~--~--------~~~~~~~~~~~~~~--~v~~~~~~~~~~~l~~~~~~dg~i~iwd~~~~~~~~~~~~~~  228 (309)
                      |.+.++.+...  .        ..+..+..+.+|.+  +|+|++++-||. +|++|+.||.++|||+..           
T Consensus       241 I~~~~~~~~~~~~~~v~~k~~~~~~t~~~~~~Gh~~~~~ITcLais~Dgt-lLlSGd~dg~VcvWdi~S-----------  308 (476)
T KOG0646|consen  241 IFQNLLFKLSGQSAGVNQKGRHEENTQINVLVGHENESAITCLAISTDGT-LLLSGDEDGKVCVWDIYS-----------  308 (476)
T ss_pred             EEeeehhcCCcccccccccccccccceeeeeccccCCcceeEEEEecCcc-EEEeeCCCCCEEEEecch-----------
Confidence            99988876431  1        11344566778877  999999999999 577999999999999988           


Q ss_pred             cCCCCceeeeecCCCcceeeEEEccCCCeEE
Q 021657          229 TNYPAGLFFQHAGHRDKVVDFHWNASDPWTV  259 (309)
Q Consensus       229 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~  259 (309)
                          .+++.++....++|+.+.+.|-.+..+
T Consensus       309 ----~Q~iRtl~~~kgpVtnL~i~~~~~~~~  335 (476)
T KOG0646|consen  309 ----KQCIRTLQTSKGPVTNLQINPLERGII  335 (476)
T ss_pred             ----HHHHHHHhhhccccceeEeecccccee
Confidence                455556555677899888876544333

>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=99.93  E-value=8.4e-24  Score=154.68  Aligned_cols=236  Identities=19%  Similarity=0.378  Sum_probs=166.9

Q ss_pred             cCCCCCcceEEEEECC--CCCEEEEecCCCcEEEEeCCccccccccCCccccccCCCCceeecCCCCCCCCcccCCCCCc
Q 021657            4 LTGHQDNAEFALAMCP--TEPYVLSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSV   81 (309)
Q Consensus         4 l~~H~~~~V~~~~~~~--~~~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (309)
                      .+.|.+ .|..+.|.+  -|+.+|+++.|++++||.=........                               ....
T Consensus        55 Wrah~~-Si~rV~WAhPEfGqvvA~cS~Drtv~iWEE~~~~~~~~-------------------------------~~~W  102 (361)
T KOG2445|consen   55 WRAHDG-SIWRVVWAHPEFGQVVATCSYDRTVSIWEEQEKSEEAH-------------------------------GRRW  102 (361)
T ss_pred             EEecCC-cEEEEEecCccccceEEEEecCCceeeeeecccccccc-------------------------------ccee
Confidence            467888 789999965  589999999999999998532100000                               0122


Q ss_pred             CcccccccccCCeEEEEEecCC-CcEEEEEcCCCeEEEEEcCCCC----cceEEEe-------eccCCceeEEEeccC--
Q 021657           82 GPRGIYNGHEDTVEDVTFCPSS-AQEFCSVGDDSCLILWDARVGT----SPVIKVE-------KAHDADLHCVDWNPL--  147 (309)
Q Consensus        82 ~~~~~~~~~~~~v~~~~~~~~~-~~~l~s~~~dg~i~iwd~~~~~----~~~~~~~-------~~~~~~v~~~~~~~~--  147 (309)
                      .....+......|++++|.|.. +..+++++.||.++||+.-...    ......+       ..+..+..|+.|+|.  
T Consensus       103 v~~ttl~DsrssV~DV~FaP~hlGLklA~~~aDG~lRIYEA~dp~nLs~W~Lq~Ei~~~~~pp~~~~~~~~CvsWn~sr~  182 (361)
T KOG2445|consen  103 VRRTTLVDSRSSVTDVKFAPKHLGLKLAAASADGILRIYEAPDPMNLSQWTLQHEIQNVIDPPGKNKQPCFCVSWNPSRM  182 (361)
T ss_pred             EEEEEeecCCcceeEEEecchhcceEEEEeccCcEEEEEecCCccccccchhhhhhhhccCCcccccCcceEEeeccccc
Confidence            2345566677899999999863 2679999999999999875432    1112222       245667889999872  


Q ss_pred             CCCeEEEEcCC-----CcEEEEecCCCCCCCCCCceeeeccCCCCeeEEEEecCC---CcEEEEecCCCcEEEEeCCccc
Q 021657          148 DDNLILTGSAD-----NSVRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWSPDK---SSVFGSSAEDGLLNIWDYEKVG  219 (309)
Q Consensus       148 ~~~~l~~~~~d-----g~i~i~d~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~---~~l~~~~~~dg~i~iwd~~~~~  219 (309)
                      ...+|++|+.+     +.+.||.......  ....+.++.+|..+|+.|+|.|+-   -+++|+++.|| |+||.++...
T Consensus       183 ~~p~iAvgs~e~a~~~~~~~Iye~~e~~r--Kw~kva~L~d~~dpI~di~wAPn~Gr~y~~lAvA~kDg-v~I~~v~~~~  259 (361)
T KOG2445|consen  183 HEPLIAVGSDEDAPHLNKVKIYEYNENGR--KWLKVAELPDHTDPIRDISWAPNIGRSYHLLAVATKDG-VRIFKVKVAR  259 (361)
T ss_pred             cCceEEEEcccCCccccceEEEEecCCcc--eeeeehhcCCCCCcceeeeeccccCCceeeEEEeecCc-EEEEEEeecc
Confidence            23578888766     4788887654210  045667778999999999999963   34789999999 9999998644


Q ss_pred             ccccCCC-----CCcCCCCceeeeecCCCcceeeEEEccCCCeEEEEecCCCCCCCCCCeEEEEEccc
Q 021657          220 KKVEQGP-----RTTNYPAGLFFQHAGHRDKVVDFHWNASDPWTVVSVSDDCDSTGGGGTLQIWRMSD  282 (309)
Q Consensus       220 ~~~~~~~-----~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~s~d~~s~~~dg~v~vw~~~~  282 (309)
                      ....+.+     .....+.+.+..+..|+..|..+.|+-.|..|.        |.|.||+|++|....
T Consensus       260 s~i~~ee~~~~~~~~~l~v~~vs~~~~H~~~VWrv~wNmtGtiLs--------StGdDG~VRLWkany  319 (361)
T KOG2445|consen  260 SAIEEEEVLAPDLMTDLPVEKVSELDDHNGEVWRVRWNMTGTILS--------STGDDGCVRLWKANY  319 (361)
T ss_pred             chhhhhcccCCCCccccceEEeeeccCCCCceEEEEEeeeeeEEe--------ecCCCceeeehhhhh
Confidence            3332222     112244566778899999999999999877544        566669999999764

>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]

Probab=99.92  E-value=1.8e-23  Score=157.86  Aligned_cols=215  Identities=18%  Similarity=0.393  Sum_probs=170.4

Q ss_pred             ccCCCCCcceEEEEECC-CCCEEEEecCCCcEEEEeCCccccccccCCccccccCCCCceeecCCCCCCCCcccCCCCCc
Q 021657            3 ILTGHQDNAEFALAMCP-TEPYVLSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSV   81 (309)
Q Consensus         3 ~l~~H~~~~V~~~~~~~-~~~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (309)
                      .+.||++ +|..++|+| +...+|+||.|.+|.||++..+-....                                 -.
T Consensus        76 ~v~GHt~-~vLDi~w~PfnD~vIASgSeD~~v~vW~IPe~~l~~~---------------------------------lt  121 (472)
T KOG0303|consen   76 LVCGHTA-PVLDIDWCPFNDCVIASGSEDTKVMVWQIPENGLTRD---------------------------------LT  121 (472)
T ss_pred             CccCccc-cccccccCccCCceeecCCCCceEEEEECCCcccccC---------------------------------cc
Confidence            4679999 899999999 567799999999999999975422111                                 12


Q ss_pred             CcccccccccCCeEEEEEecCCCcEEEEEcCCCeEEEEEcCCCCcceEEEeeccCCceeEEEeccCCCCeEEEEcCCCcE
Q 021657           82 GPRGIYNGHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSV  161 (309)
Q Consensus        82 ~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i  161 (309)
                      +++..+.+|+..|--++|+|.-.+.|++++.|.+|.+||+.+++  ....+. |...|+++.|+. +|.+|++.+.|..|
T Consensus       122 epvv~L~gH~rrVg~V~wHPtA~NVLlsag~Dn~v~iWnv~tge--ali~l~-hpd~i~S~sfn~-dGs~l~TtckDKkv  197 (472)
T KOG0303|consen  122 EPVVELYGHQRRVGLVQWHPTAPNVLLSAGSDNTVSIWNVGTGE--ALITLD-HPDMVYSMSFNR-DGSLLCTTCKDKKV  197 (472)
T ss_pred             cceEEEeecceeEEEEeecccchhhHhhccCCceEEEEeccCCc--eeeecC-CCCeEEEEEecc-CCceeeeeccccee
Confidence            56788999999999999999988999999999999999999998  455554 999999999999 99999999999999


Q ss_pred             EEEecCCCCCCCCCCceeeeccCCCC-eeEEEEecCCCcEEEEec---CCCcEEEEeCCcccccccCCCCCcCCCCceee
Q 021657          162 RMFDRRNLTSNGVGSPINKFEGHSAA-VLCVQWSPDKSSVFGSSA---EDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFF  237 (309)
Q Consensus       162 ~i~d~~~~~~~~~~~~~~~~~~~~~~-v~~~~~~~~~~~l~~~~~---~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~  237 (309)
                      ||||.++      ++.+..-.+|.+. -..+-|-.++. ++.+|-   .+.++-+||-.+..++.            .+.
T Consensus       198 Rv~dpr~------~~~v~e~~~heG~k~~Raifl~~g~-i~tTGfsr~seRq~aLwdp~nl~eP~------------~~~  258 (472)
T KOG0303|consen  198 RVIDPRR------GTVVSEGVAHEGAKPARAIFLASGK-IFTTGFSRMSERQIALWDPNNLEEPI------------ALQ  258 (472)
T ss_pred             EEEcCCC------CcEeeecccccCCCcceeEEeccCc-eeeeccccccccceeccCcccccCcc------------eeE
Confidence            9999999      8888888777653 44566888887 565553   46889999988744432            233


Q ss_pred             eecCCCcceeeEEEccCCCeEEEEecCCCCCCCCCCeEEEEEccc
Q 021657          238 QHAGHRDKVVDFHWNASDPWTVVSVSDDCDSTGGGGTLQIWRMSD  282 (309)
Q Consensus       238 ~~~~~~~~v~~~~~~~~~~~~~~s~s~d~~s~~~dg~v~vw~~~~  282 (309)
                      ++. .++.|.---|.|+...+.+       .|-.|+.|+.|.+.+
T Consensus       259 elD-tSnGvl~PFyD~dt~ivYl-------~GKGD~~IRYyEit~  295 (472)
T KOG0303|consen  259 ELD-TSNGVLLPFYDPDTSIVYL-------CGKGDSSIRYFEITN  295 (472)
T ss_pred             Eec-cCCceEEeeecCCCCEEEE-------EecCCcceEEEEecC
Confidence            333 3445555567887777776       444569999999875

>KOG1408 consensus WD40 repeat protein [Function unknown]

Probab=99.92  E-value=6.7e-24  Score=171.69  Aligned_cols=185  Identities=16%  Similarity=0.249  Sum_probs=147.1

Q ss_pred             ccCCeEEEEEecCCCcEEEEEcCCCeEEEEEcCCCCcceEEEeeccCCceeEEEeccC--CCCeEEEEcCCCcEEEEecC
Q 021657           90 HEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPL--DDNLILTGSADNSVRMFDRR  167 (309)
Q Consensus        90 ~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~--~~~~l~~~~~dg~i~i~d~~  167 (309)
                      ..-.+.+++.+|+| ++||+|..-|.+++|++..-+  ....+.+|...|.|+.|+..  ..++|++++.|.-|++||..
T Consensus       458 ~r~G~R~~~vSp~g-qhLAsGDr~GnlrVy~Lq~l~--~~~~~eAHesEilcLeyS~p~~~~kLLASasrdRlIHV~Dv~  534 (1080)
T KOG1408|consen  458 SRFGFRALAVSPDG-QHLASGDRGGNLRVYDLQELE--YTCFMEAHESEILCLEYSFPVLTNKLLASASRDRLIHVYDVK  534 (1080)
T ss_pred             cccceEEEEECCCc-ceecccCccCceEEEEehhhh--hhhheecccceeEEEeecCchhhhHhhhhccCCceEEEEecc
Confidence            34568999999999 889999999999999998777  67788899999999999751  24689999999999999987


Q ss_pred             CCCCCCCCCceeeeccCCCCeeEE-------------------------------------------------EEecCCC
Q 021657          168 NLTSNGVGSPINKFEGHSAAVLCV-------------------------------------------------QWSPDKS  198 (309)
Q Consensus       168 ~~~~~~~~~~~~~~~~~~~~v~~~-------------------------------------------------~~~~~~~  198 (309)
                      ..     ..+++++.+|...|+++                                                 +..|..+
T Consensus       535 rn-----y~l~qtld~HSssITsvKFa~~gln~~MiscGADksimFr~~qk~~~g~~f~r~t~t~~ktTlYDm~Vdp~~k  609 (1080)
T KOG1408|consen  535 RN-----YDLVQTLDGHSSSITSVKFACNGLNRKMISCGADKSIMFRVNQKASSGRLFPRHTQTLSKTTLYDMAVDPTSK  609 (1080)
T ss_pred             cc-----cchhhhhcccccceeEEEEeecCCceEEEeccCchhhheehhccccCceeccccccccccceEEEeeeCCCcc
Confidence            53     44555555555555554                                                 4444445


Q ss_pred             cEEEEecCCCcEEEEeCCcccccccCCCCCcCCCCceeeeecCCCcceeeEEEccCCCeEEEEecCCCCCCCCCCeEEEE
Q 021657          199 SVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKVVDFHWNASDPWTVVSVSDDCDSTGGGGTLQIW  278 (309)
Q Consensus       199 ~l~~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~s~d~~s~~~dg~v~vw  278 (309)
                      + +++++.|..|+|||+...++.            +.+....+|.+....+...|.+-|++.++        .|.++.++
T Consensus       610 ~-v~t~cQDrnirif~i~sgKq~------------k~FKgs~~~eG~lIKv~lDPSgiY~atSc--------sdktl~~~  668 (1080)
T KOG1408|consen  610 L-VVTVCQDRNIRIFDIESGKQV------------KSFKGSRDHEGDLIKVILDPSGIYLATSC--------SDKTLCFV  668 (1080)
T ss_pred             e-EEEEecccceEEEecccccee------------eeecccccCCCceEEEEECCCccEEEEee--------cCCceEEE
Confidence            4 568889999999999883322            23444456778889999999999888444        45799999


Q ss_pred             EccccccCChhhHhHhhhcccceEEEeeeCC
Q 021657          279 RMSDLIYRPQDEVLAELEKFKAHVISCTSKP  309 (309)
Q Consensus       279 ~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~P  309 (309)
                      |+.      +++++.++.+|...|+.+.|.|
T Consensus       669 Df~------sgEcvA~m~GHsE~VTG~kF~n  693 (1080)
T KOG1408|consen  669 DFV------SGECVAQMTGHSEAVTGVKFLN  693 (1080)
T ss_pred             Eec------cchhhhhhcCcchheeeeeecc
Confidence            999      8999999999999999999975

>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]

Probab=99.92  E-value=1.4e-23  Score=168.85  Aligned_cols=272  Identities=21%  Similarity=0.315  Sum_probs=193.7

Q ss_pred             ccCCCCCcceEEEEECCCCCEEEEecCCCcEEEEeCCccc----cccccCCcc--c-----cccCCCCceeecCCCCCCC
Q 021657            3 ILTGHQDNAEFALAMCPTEPYVLSGGKDKSVVLWSIQDHI----TSSATDPAT--A-----KSAGSSGSIIKQSPKPGDG   71 (309)
Q Consensus         3 ~l~~H~~~~V~~~~~~~~~~~l~t~~~dg~i~vwd~~~~~----~~~~~~~~~--~-----~~~~~~~~~~~~~~~~~~~   71 (309)
                      .|.||++ -|+++.|+|.+..|++++.|.++.+|...+..    .........  .     .....+.  ..+......+
T Consensus       262 ll~GHeD-WV~sv~W~p~~~~LLSASaDksmiiW~pd~~tGiWv~~vRlGe~gg~a~GF~g~lw~~n~--~~ii~~g~~G  338 (764)
T KOG1063|consen  262 LLMGHED-WVYSVWWHPEGLDLLSASADKSMIIWKPDENTGIWVDVVRLGEVGGSAGGFWGGLWSPNS--NVIIAHGRTG  338 (764)
T ss_pred             hhcCccc-ceEEEEEccchhhheecccCcceEEEecCCccceEEEEEEeecccccccceeeEEEcCCC--CEEEEecccC
Confidence            4569999 89999999999999999999999999987641    111111100  0     0000011  1122223345


Q ss_pred             CcccCCCC---CcCcccccccccCCeEEEEEecCCCcEEEEEcCCCeEEEEEcCCC------------------------
Q 021657           72 NDKAADGP---SVGPRGIYNGHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVG------------------------  124 (309)
Q Consensus        72 ~~~~~~~~---~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~------------------------  124 (309)
                      ...+|...   .......+.+|.+.|.++.|.|.| .+|++.+.|-+-|++-.-..                        
T Consensus       339 g~hlWkt~d~~~w~~~~~iSGH~~~V~dv~W~psG-eflLsvs~DQTTRlFa~wg~q~~wHEiaRPQiHGyDl~c~~~vn  417 (764)
T KOG1063|consen  339 GFHLWKTKDKTFWTQEPVISGHVDGVKDVDWDPSG-EFLLSVSLDQTTRLFARWGRQQEWHEIARPQIHGYDLTCLSFVN  417 (764)
T ss_pred             cEEEEeccCccceeeccccccccccceeeeecCCC-CEEEEeccccceeeecccccccceeeecccccccccceeeehcc
Confidence            56666521   223445567899999999999988 67888888877777643200                        


Q ss_pred             --------------------------------------------------------------------------------
Q 021657          125 --------------------------------------------------------------------------------  124 (309)
Q Consensus       125 --------------------------------------------------------------------------------  124 (309)
                                                                                                      
T Consensus       418 ~~~~FVSgAdEKVlRvF~aPk~fv~~l~~i~g~~~~~~~~~p~gA~VpaLGLSnKa~~~~e~~~G~~~~~~~et~~~~~p  497 (764)
T KOG1063|consen  418 EDLQFVSGADEKVLRVFEAPKSFVKSLMAICGKCFKGSDELPDGANVPALGLSNKAFFPGETNTGGEAAVCAETPLAAAP  497 (764)
T ss_pred             CCceeeecccceeeeeecCcHHHHHHHHHHhCccccCchhcccccccccccccCCCCcccccccccccceeeecccccCc
Confidence                                                                                            


Q ss_pred             ----------------CcceEEEeeccCCceeEEEeccCCCCeEEEEcCCC-----cEEEEecCCCCCCCCCCceeeecc
Q 021657          125 ----------------TSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADN-----SVRMFDRRNLTSNGVGSPINKFEG  183 (309)
Q Consensus       125 ----------------~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg-----~i~i~d~~~~~~~~~~~~~~~~~~  183 (309)
                                      -.|.++.+.+|...|++++.+| +++++|++....     .|++|+..+      ...+..+.+
T Consensus       498 ~~L~ePP~EdqLq~~tLwPEv~KLYGHGyEv~~l~~s~-~gnliASaCKS~~~ehAvI~lw~t~~------W~~~~~L~~  570 (764)
T KOG1063|consen  498 CELTEPPTEDQLQQNTLWPEVHKLYGHGYEVYALAISP-TGNLIASACKSSLKEHAVIRLWNTAN------WLQVQELEG  570 (764)
T ss_pred             hhccCCChHHHHHHhccchhhHHhccCceeEEEEEecC-CCCEEeehhhhCCccceEEEEEeccc------hhhhheecc
Confidence                            0012233568889999999999 999999998653     599999998      888889999


Q ss_pred             CCCCeeEEEEecCCCcEEEEecCCCcEEEEeCCcccccccCCCCCcCCCCceeeeecCCCcceeeEEEccCCCeEEEEec
Q 021657          184 HSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKVVDFHWNASDPWTVVSVS  263 (309)
Q Consensus       184 ~~~~v~~~~~~~~~~~l~~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~s  263 (309)
                      |.-.|+.|+|+|||++|+ +.+.|.++.+|..........           .+.....|+.-|.++.|+|++.+ ++++|
T Consensus       571 HsLTVT~l~FSpdg~~LL-svsRDRt~sl~~~~~~~~~e~-----------~fa~~k~HtRIIWdcsW~pde~~-FaTaS  637 (764)
T KOG1063|consen  571 HSLTVTRLAFSPDGRYLL-SVSRDRTVSLYEVQEDIKDEF-----------RFACLKAHTRIIWDCSWSPDEKY-FATAS  637 (764)
T ss_pred             cceEEEEEEECCCCcEEE-EeecCceEEeeeeecccchhh-----------hhccccccceEEEEcccCcccce-eEEec
Confidence            999999999999999865 899999999999865322211           12236789999999999998776 66666


Q ss_pred             CCCCCCCCCCeEEEEEccccccCChhhHhH--hhhcccceEEEeeeCC
Q 021657          264 DDCDSTGGGGTLQIWRMSDLIYRPQDEVLA--ELEKFKAHVISCTSKP  309 (309)
Q Consensus       264 ~d~~s~~~dg~v~vw~~~~~~~~~~~~~~~--~~~~h~~~v~~~~~~P  309 (309)
                      +|       .+|++|...+..    .+.+.  ....+...|+.+++.|
T Consensus       638 RD-------K~VkVW~~~~~~----d~~i~~~a~~~~~~aVTAv~~~~  674 (764)
T KOG1063|consen  638 RD-------KKVKVWEEPDLR----DKYISRFACLKFSLAVTAVAYLP  674 (764)
T ss_pred             CC-------ceEEEEeccCch----hhhhhhhchhccCCceeeEEeec
Confidence            66       999999998531    13333  2346888999999876

>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]

Probab=99.92  E-value=4.6e-24  Score=165.95  Aligned_cols=236  Identities=17%  Similarity=0.274  Sum_probs=187.4

Q ss_pred             CcceEEEEECCCCCEEEEecCCCcEEEEeCCccccccccCCcc----ccccCCCCceeecCCCCCCCCcccCCCCCcCcc
Q 021657            9 DNAEFALAMCPTEPYVLSGGKDKSVVLWSIQDHITSSATDPAT----AKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPR   84 (309)
Q Consensus         9 ~~~V~~~~~~~~~~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   84 (309)
                      ++.|.++.+.|||+.|++|++-.++.|||+.............    ..................++++.+||+.+...+
T Consensus       465 dnyiRSckL~pdgrtLivGGeastlsiWDLAapTprikaeltssapaCyALa~spDakvcFsccsdGnI~vwDLhnq~~V  544 (705)
T KOG0639|consen  465 DNYIRSCKLLPDGRTLIVGGEASTLSIWDLAAPTPRIKAELTSSAPACYALAISPDAKVCFSCCSDGNIAVWDLHNQTLV  544 (705)
T ss_pred             ccceeeeEecCCCceEEeccccceeeeeeccCCCcchhhhcCCcchhhhhhhcCCccceeeeeccCCcEEEEEcccceee
Confidence            3478999999999999999999999999998763322221111    111122222333444567899999999999999


Q ss_pred             cccccccCCeEEEEEecCCCcEEEEEcCCCeEEEEEcCCCCcceEEEeeccCCceeEEEeccCCCCeEEEEcCCCcEEEE
Q 021657           85 GIYNGHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMF  164 (309)
Q Consensus        85 ~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~  164 (309)
                      +.|++|+..+.||..+++| ..|-||+-|.+|+-||++++++....   ...+.|.++.++| ++.++++|-.++.+.+.
T Consensus       545 rqfqGhtDGascIdis~dG-tklWTGGlDntvRcWDlregrqlqqh---dF~SQIfSLg~cP-~~dWlavGMens~vevl  619 (705)
T KOG0639|consen  545 RQFQGHTDGASCIDISKDG-TKLWTGGLDNTVRCWDLREGRQLQQH---DFSSQIFSLGYCP-TGDWLAVGMENSNVEVL  619 (705)
T ss_pred             ecccCCCCCceeEEecCCC-ceeecCCCccceeehhhhhhhhhhhh---hhhhhheecccCC-CccceeeecccCcEEEE
Confidence            9999999999999999999 88999999999999999998843333   3457899999999 99999999999999998


Q ss_pred             ecCCCCCCCCCCceeeeccCCCCeeEEEEecCCCcEEEEecCCCcEEEEeCCcccccccCCCCCcCCCCceeeeecCCCc
Q 021657          165 DRRNLTSNGVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRD  244 (309)
Q Consensus       165 d~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  244 (309)
                      ....       .....+.-|.+-|.++.|.+.|++ +++.+.|+.+..|.+.-               ...++... ...
T Consensus       620 h~sk-------p~kyqlhlheScVLSlKFa~cGkw-fvStGkDnlLnawrtPy---------------GasiFqsk-E~S  675 (705)
T KOG0639|consen  620 HTSK-------PEKYQLHLHESCVLSLKFAYCGKW-FVSTGKDNLLNAWRTPY---------------GASIFQSK-ESS  675 (705)
T ss_pred             ecCC-------ccceeecccccEEEEEEecccCce-eeecCchhhhhhccCcc---------------ccceeecc-ccC
Confidence            8764       445667778999999999999997 67999999999999876               33444443 456


Q ss_pred             ceeeEEEccCCCeEEEEecCCCCCCCCCCeEEEEEcc
Q 021657          245 KVVDFHWNASDPWTVVSVSDDCDSTGGGGTLQIWRMS  281 (309)
Q Consensus       245 ~v~~~~~~~~~~~~~~s~s~d~~s~~~dg~v~vw~~~  281 (309)
                      .|.++..+-++.+++        ||+.|....||.+.
T Consensus       676 sVlsCDIS~ddkyIV--------TGSGdkkATVYeV~  704 (705)
T KOG0639|consen  676 SVLSCDISFDDKYIV--------TGSGDKKATVYEVI  704 (705)
T ss_pred             cceeeeeccCceEEE--------ecCCCcceEEEEEe
Confidence            899999999877666        77777999998763

>KOG2048 consensus WD40 repeat protein [General function prediction only]

Probab=99.92  E-value=5.7e-23  Score=164.91  Aligned_cols=260  Identities=14%  Similarity=0.185  Sum_probs=194.5

Q ss_pred             cceEEEEECCCCCEEEEecCCCcEEEEeCCccccccccCCccccccCCCCceeecC------CCCCCCCcccCCCCCcCc
Q 021657           10 NAEFALAMCPTEPYVLSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQS------PKPGDGNDKAADGPSVGP   83 (309)
Q Consensus        10 ~~V~~~~~~~~~~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~   83 (309)
                      ++|.++||+.+.+.||.+-.||.|.||++...-........   ..+......+++      .....+.+..||+.+.++
T Consensus        26 s~I~slA~s~kS~~lAvsRt~g~IEiwN~~~~w~~~~vi~g---~~drsIE~L~W~e~~RLFS~g~sg~i~EwDl~~lk~  102 (691)
T KOG2048|consen   26 SEIVSLAYSHKSNQLAVSRTDGNIEIWNLSNNWFLEPVIHG---PEDRSIESLAWAEGGRLFSSGLSGSITEWDLHTLKQ  102 (691)
T ss_pred             cceEEEEEeccCCceeeeccCCcEEEEccCCCceeeEEEec---CCCCceeeEEEccCCeEEeecCCceEEEEecccCce
Confidence            37999999999999999999999999999875221111110   111112222222      224568899999999999


Q ss_pred             ccccccccCCeEEEEEecCCCcEEEEEcCCCeEEEEEcCCCCcceEEEeeccCCceeEEEeccCCCCeEEEEcCCCcEEE
Q 021657           84 RGIYNGHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRM  163 (309)
Q Consensus        84 ~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i  163 (309)
                      ...+....+.|++++.+|.+ ..++.|++||.+..++...++......+...++.|.++.|+| ++..+++|+.||.|++
T Consensus       103 ~~~~d~~gg~IWsiai~p~~-~~l~IgcddGvl~~~s~~p~~I~~~r~l~rq~sRvLslsw~~-~~~~i~~Gs~Dg~Iri  180 (691)
T KOG2048|consen  103 KYNIDSNGGAIWSIAINPEN-TILAIGCDDGVLYDFSIGPDKITYKRSLMRQKSRVLSLSWNP-TGTKIAGGSIDGVIRI  180 (691)
T ss_pred             eEEecCCCcceeEEEeCCcc-ceEEeecCCceEEEEecCCceEEEEeecccccceEEEEEecC-CccEEEecccCceEEE
Confidence            99999999999999999998 789999999988888887776444455556678999999999 9999999999999999


Q ss_pred             EecCCCCCCCCCCceeee-------cc-CCCCeeEEEEecCCCcEEEEecCCCcEEEEeCCcccccccCCCCCcCCCCce
Q 021657          164 FDRRNLTSNGVGSPINKF-------EG-HSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGL  235 (309)
Q Consensus       164 ~d~~~~~~~~~~~~~~~~-------~~-~~~~v~~~~~~~~~~~l~~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~  235 (309)
                      ||...      +..+...       .. ...-|.++.|-.++.  +++|..-|+|.+||-..               ..+
T Consensus       181 wd~~~------~~t~~~~~~~~d~l~k~~~~iVWSv~~Lrd~t--I~sgDS~G~V~FWd~~~---------------gTL  237 (691)
T KOG2048|consen  181 WDVKS------GQTLHIITMQLDRLSKREPTIVWSVLFLRDST--IASGDSAGTVTFWDSIF---------------GTL  237 (691)
T ss_pred             EEcCC------CceEEEeeecccccccCCceEEEEEEEeecCc--EEEecCCceEEEEcccC---------------cch
Confidence            99998      4444411       11 233467888887775  67999999999999987               556


Q ss_pred             eeeecCCCcceeeEEEccCCCeEEEEecCCCCCCCCCCeEEEEEccccccCChhhHhHhhhcccceEEEeee
Q 021657          236 FFQHAGHRDKVVDFHWNASDPWTVVSVSDDCDSTGGGGTLQIWRMSDLIYRPQDEVLAELEKFKAHVISCTS  307 (309)
Q Consensus       236 ~~~~~~~~~~v~~~~~~~~~~~~~~s~s~d~~s~~~dg~v~vw~~~~~~~~~~~~~~~~~~~h~~~v~~~~~  307 (309)
                      +..+..|...|.+++-.+++.+++        ++|.|+.|..|........  -........|...|.+++.
T Consensus       238 iqS~~~h~adVl~Lav~~~~d~vf--------saGvd~~ii~~~~~~~~~~--wv~~~~r~~h~hdvrs~av  299 (691)
T KOG2048|consen  238 IQSHSCHDADVLALAVADNEDRVF--------SAGVDPKIIQYSLTTNKSE--WVINSRRDLHAHDVRSMAV  299 (691)
T ss_pred             hhhhhhhhcceeEEEEcCCCCeEE--------EccCCCceEEEEecCCccc--eeeeccccCCcccceeeee
Confidence            777889999999999999989888        7888899999998742100  0011223455556666553

>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]

Probab=99.92  E-value=3.7e-23  Score=150.32  Aligned_cols=205  Identities=22%  Similarity=0.353  Sum_probs=161.9

Q ss_pred             CCcceEEEEECC-CCCEEEEecCCCcEEEEeCCccccccccCCccccccCCCCceeecCCCCCCCCcccCCCCCcCcccc
Q 021657            8 QDNAEFALAMCP-TEPYVLSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGI   86 (309)
Q Consensus         8 ~~~~V~~~~~~~-~~~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   86 (309)
                      ...++++..|+. +.+++.++|-|-+..|||++++.                                     .+.....
T Consensus       149 ~~aPlTSFDWne~dp~~igtSSiDTTCTiWdie~~~-------------------------------------~~~vkTQ  191 (364)
T KOG0290|consen  149 FCAPLTSFDWNEVDPNLIGTSSIDTTCTIWDIETGV-------------------------------------SGTVKTQ  191 (364)
T ss_pred             cCCcccccccccCCcceeEeecccCeEEEEEEeecc-------------------------------------ccceeeE
Confidence            334899999987 67889999999999999998641                                     1112345


Q ss_pred             cccccCCeEEEEEecCCCcEEEEEcCCCeEEEEEcCCCCcceEEEeecc-CCceeEEEeccCCCCeEEEEcCC-CcEEEE
Q 021657           87 YNGHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPVIKVEKAH-DADLHCVDWNPLDDNLILTGSAD-NSVRMF  164 (309)
Q Consensus        87 ~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~-~~~v~~~~~~~~~~~~l~~~~~d-g~i~i~  164 (309)
                      +-.|..+|.+++|...+...||+.+.||.++++|++.-+...+...... ..+...++|++++.+++|+-..| ..|.+.
T Consensus       192 LIAHDKEV~DIaf~~~s~~~FASvgaDGSvRmFDLR~leHSTIIYE~p~~~~pLlRLswnkqDpnymATf~~dS~~V~iL  271 (364)
T KOG0290|consen  192 LIAHDKEVYDIAFLKGSRDVFASVGADGSVRMFDLRSLEHSTIIYEDPSPSTPLLRLSWNKQDPNYMATFAMDSNKVVIL  271 (364)
T ss_pred             EEecCcceeEEEeccCccceEEEecCCCcEEEEEecccccceEEecCCCCCCcceeeccCcCCchHHhhhhcCCceEEEE
Confidence            6789999999999998888999999999999999998764333333333 56889999999888999987765 579999


Q ss_pred             ecCCCCCCCCCCceeeeccCCCCeeEEEEecCCCcEEEEecCCCcEEEEeCCcccccccCCCCCcCCCCceeeeecCCCc
Q 021657          165 DRRNLTSNGVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRD  244 (309)
Q Consensus       165 d~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  244 (309)
                      |+|.+     ..++.++.+|.+.|+.|+|.|.....++++++|..+.+||+........         ..++..+. -.+
T Consensus       272 DiR~P-----~tpva~L~~H~a~VNgIaWaPhS~~hictaGDD~qaliWDl~q~~~~~~---------~dPilay~-a~~  336 (364)
T KOG0290|consen  272 DIRVP-----CTPVARLRNHQASVNGIAWAPHSSSHICTAGDDCQALIWDLQQMPRENG---------EDPILAYT-AGG  336 (364)
T ss_pred             EecCC-----CcceehhhcCcccccceEecCCCCceeeecCCcceEEEEecccccccCC---------CCchhhhh-ccc
Confidence            99997     7899999999999999999999888899999999999999987444111         11222233 456


Q ss_pred             ceeeEEEccCCCeEEEEecC
Q 021657          245 KVVDFHWNASDPWTVVSVSD  264 (309)
Q Consensus       245 ~v~~~~~~~~~~~~~~s~s~  264 (309)
                      .|+.+.|++..+-.++.+..
T Consensus       337 EVNqi~Ws~~~~Dwiai~~~  356 (364)
T KOG0290|consen  337 EVNQIQWSSSQPDWIAICFG  356 (364)
T ss_pred             eeeeeeecccCCCEEEEEec
Confidence            89999999876666655544

>KOG1408 consensus WD40 repeat protein [Function unknown]

Probab=99.92  E-value=1.6e-23  Score=169.55  Aligned_cols=240  Identities=18%  Similarity=0.273  Sum_probs=185.7

Q ss_pred             eEEEEECCCCCEEEEecCCCcEEEEeCCccccccccCCccc--c---ccCCCCceeecCCCCCCCCcccCCCC-CcCccc
Q 021657           12 EFALAMCPTEPYVLSGGKDKSVVLWSIQDHITSSATDPATA--K---SAGSSGSIIKQSPKPGDGNDKAADGP-SVGPRG   85 (309)
Q Consensus        12 V~~~~~~~~~~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~--~---~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~   85 (309)
                      +.+++++|+|++||+|..-|.+|||++.+............  .   ..........++.+..+..+.++|.. +..+++
T Consensus       462 ~R~~~vSp~gqhLAsGDr~GnlrVy~Lq~l~~~~~~eAHesEilcLeyS~p~~~~kLLASasrdRlIHV~Dv~rny~l~q  541 (1080)
T KOG1408|consen  462 FRALAVSPDGQHLASGDRGGNLRVYDLQELEYTCFMEAHESEILCLEYSFPVLTNKLLASASRDRLIHVYDVKRNYDLVQ  541 (1080)
T ss_pred             eEEEEECCCcceecccCccCceEEEEehhhhhhhheecccceeEEEeecCchhhhHhhhhccCCceEEEEecccccchhh
Confidence            89999999999999999999999999987644333222111  1   11122234556666777888888865 467788


Q ss_pred             ccccccCCeEEEEEecCC-CcEEEEEcCCCeEEEEEcCC---CCcceEEEeeccCCceeEEEeccCCCCeEEEEcCCCcE
Q 021657           86 IYNGHEDTVEDVTFCPSS-AQEFCSVGDDSCLILWDARV---GTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSV  161 (309)
Q Consensus        86 ~~~~~~~~v~~~~~~~~~-~~~l~s~~~dg~i~iwd~~~---~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i  161 (309)
                      ++.+|...|+++.|...| ...+++++.|..|..--.+.   +..-........+..++.|+..| +..++++++.|..|
T Consensus       542 tld~HSssITsvKFa~~gln~~MiscGADksimFr~~qk~~~g~~f~r~t~t~~ktTlYDm~Vdp-~~k~v~t~cQDrni  620 (1080)
T KOG1408|consen  542 TLDGHSSSITSVKFACNGLNRKMISCGADKSIMFRVNQKASSGRLFPRHTQTLSKTTLYDMAVDP-TSKLVVTVCQDRNI  620 (1080)
T ss_pred             hhcccccceeEEEEeecCCceEEEeccCchhhheehhccccCceeccccccccccceEEEeeeCC-CcceEEEEecccce
Confidence            999999999999998765 35688999998776533221   11111111122345789999999 99999999999999


Q ss_pred             EEEecCCCCCCCCCCceeeecc---CCCCeeEEEEecCCCcEEEEecCCCcEEEEeCCcccccccCCCCCcCCCCceeee
Q 021657          162 RMFDRRNLTSNGVGSPINKFEG---HSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQ  238 (309)
Q Consensus       162 ~i~d~~~~~~~~~~~~~~~~~~---~~~~v~~~~~~~~~~~l~~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~  238 (309)
                      +|||+.+      ++..+.|++   |.+..-.+...|.|-| +|+.+.|.++.++|+-.               .+++..
T Consensus       621 rif~i~s------gKq~k~FKgs~~~eG~lIKv~lDPSgiY-~atScsdktl~~~Df~s---------------gEcvA~  678 (1080)
T KOG1408|consen  621 RIFDIES------GKQVKSFKGSRDHEGDLIKVILDPSGIY-LATSCSDKTLCFVDFVS---------------GECVAQ  678 (1080)
T ss_pred             EEEeccc------cceeeeecccccCCCceEEEEECCCccE-EEEeecCCceEEEEecc---------------chhhhh
Confidence            9999999      888888875   5567778999999997 57888899999999988               567788


Q ss_pred             ecCCCcceeeEEEccCCCeEEEEecCCCCCCCCCCeEEEEEccc
Q 021657          239 HAGHRDKVVDFHWNASDPWTVVSVSDDCDSTGGGGTLQIWRMSD  282 (309)
Q Consensus       239 ~~~~~~~v~~~~~~~~~~~~~~s~s~d~~s~~~dg~v~vw~~~~  282 (309)
                      +.||...|+.+.|.+|-..|+        +.+.||.|.||.+..
T Consensus       679 m~GHsE~VTG~kF~nDCkHlI--------SvsgDgCIFvW~lp~  714 (1080)
T KOG1408|consen  679 MTGHSEAVTGVKFLNDCKHLI--------SVSGDGCIFVWKLPL  714 (1080)
T ss_pred             hcCcchheeeeeecccchhhe--------eecCCceEEEEECch
Confidence            899999999999999988877        666779999999974

>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]

Probab=99.92  E-value=5e-23  Score=150.27  Aligned_cols=238  Identities=15%  Similarity=0.166  Sum_probs=181.4

Q ss_pred             ccCCCCCcceEEEEECCCCCEEEEecCCCcEEEEeCCccccc---cccCCccccccCCCCceeecCCCCCCCCcccCCCC
Q 021657            3 ILTGHQDNAEFALAMCPTEPYVLSGGKDKSVVLWSIQDHITS---SATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGP   79 (309)
Q Consensus         3 ~l~~H~~~~V~~~~~~~~~~~l~t~~~dg~i~vwd~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   79 (309)
                      ....|.+ +|.+++|+.||..+++|+.|+.+++||+.++...   .+..+.............++.+++-+..+++||.+
T Consensus        67 a~~~~~~-PvL~v~WsddgskVf~g~~Dk~~k~wDL~S~Q~~~v~~Hd~pvkt~~wv~~~~~~cl~TGSWDKTlKfWD~R  145 (347)
T KOG0647|consen   67 AQQSHDG-PVLDVCWSDDGSKVFSGGCDKQAKLWDLASGQVSQVAAHDAPVKTCHWVPGMNYQCLVTGSWDKTLKFWDTR  145 (347)
T ss_pred             hhhccCC-CeEEEEEccCCceEEeeccCCceEEEEccCCCeeeeeecccceeEEEEecCCCcceeEecccccceeecccC
Confidence            3456888 9999999999999999999999999999987322   22333333444444446778888999999999999


Q ss_pred             CcCcccccccccCCeEEEEEecCCCcEEEEEcCCCeEEEEEcCCCCcceEEEeeccCCceeEEEeccCCCCeEEEEcCCC
Q 021657           80 SVGPRGIYNGHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADN  159 (309)
Q Consensus        80 ~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg  159 (309)
                      ...++..+.- .+++.++..-.   .+++.+..+..|.+|+++.+..........-+-.++|++..+ +....+.|+-+|
T Consensus       146 ~~~pv~t~~L-PeRvYa~Dv~~---pm~vVata~r~i~vynL~n~~te~k~~~SpLk~Q~R~va~f~-d~~~~alGsiEG  220 (347)
T KOG0647|consen  146 SSNPVATLQL-PERVYAADVLY---PMAVVATAERHIAVYNLENPPTEFKRIESPLKWQTRCVACFQ-DKDGFALGSIEG  220 (347)
T ss_pred             CCCeeeeeec-cceeeehhccC---ceeEEEecCCcEEEEEcCCCcchhhhhcCcccceeeEEEEEe-cCCceEeeeecc
Confidence            9888877663 45677666533   467888889999999997765333333333455789999998 788889999999


Q ss_pred             cEEEEecCCCCCCCCCCceeeeccCC---------CCeeEEEEecCCCcEEEEecCCCcEEEEeCCcccccccCCCCCcC
Q 021657          160 SVRMFDRRNLTSNGVGSPINKFEGHS---------AAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTN  230 (309)
Q Consensus       160 ~i~i~d~~~~~~~~~~~~~~~~~~~~---------~~v~~~~~~~~~~~l~~~~~~dg~i~iwd~~~~~~~~~~~~~~~~  230 (309)
                      .+-+..+..+.    .+.-..|+.|.         -.|++|+|+|.... |++++.||++.+||-..             
T Consensus       221 rv~iq~id~~~----~~~nFtFkCHR~~~~~~~~VYaVNsi~FhP~hgt-lvTaGsDGtf~FWDkda-------------  282 (347)
T KOG0647|consen  221 RVAIQYIDDPN----PKDNFTFKCHRSTNSVNDDVYAVNSIAFHPVHGT-LVTAGSDGTFSFWDKDA-------------  282 (347)
T ss_pred             eEEEEecCCCC----ccCceeEEEeccCCCCCCceEEecceEeecccce-EEEecCCceEEEecchh-------------
Confidence            99999888732    13334455554         25789999998775 67999999999999876             


Q ss_pred             CCCceeeeecCCCcceeeEEEccCCCeEEEEecCCC
Q 021657          231 YPAGLFFQHAGHRDKVVDFHWNASDPWTVVSVSDDC  266 (309)
Q Consensus       231 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~s~d~  266 (309)
                        ...+.....|..+|++..|+.+|..++.+.+.|.
T Consensus       283 --r~kLk~s~~~~qpItcc~fn~~G~ifaYA~gYDW  316 (347)
T KOG0647|consen  283 --RTKLKTSETHPQPITCCSFNRNGSIFAYALGYDW  316 (347)
T ss_pred             --hhhhhccCcCCCccceeEecCCCCEEEEEeeccc
Confidence              3345566789999999999999999888888884

>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]

Probab=99.92  E-value=5.8e-24  Score=167.24  Aligned_cols=232  Identities=21%  Similarity=0.345  Sum_probs=179.7

Q ss_pred             ccCCCCCcceEEEEECCCCCEEEEecCCCcEEEEeCCccccccccCCccccccCCCCceeecCCCCCCCCcccCCCCCcC
Q 021657            3 ILTGHQDNAEFALAMCPTEPYVLSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVG   82 (309)
Q Consensus         3 ~l~~H~~~~V~~~~~~~~~~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   82 (309)
                      +|+.|.+ .|+.++|+|....|++++.||+|++|+++.....                                .....+
T Consensus       289 tl~s~~d-~ir~l~~~~sep~lit~sed~~lk~WnLqk~~~s--------------------------------~~~~~e  335 (577)
T KOG0642|consen  289 TLRSHDD-CIRALAFHPSEPVLITASEDGTLKLWNLQKAKKS--------------------------------AEKDVE  335 (577)
T ss_pred             eeecchh-hhhhhhcCCCCCeEEEeccccchhhhhhcccCCc--------------------------------ccccee
Confidence            5677888 8999999999999999999999999999541110                                112456


Q ss_pred             cccccccccCCeEEEEEecCCCcEEEEEcCCCeEEEEEcCCCC--------cceEEEeeccCCceeEEEeccCCCCeEEE
Q 021657           83 PRGIYNGHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGT--------SPVIKVEKAHDADLHCVDWNPLDDNLILT  154 (309)
Q Consensus        83 ~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~--------~~~~~~~~~~~~~v~~~~~~~~~~~~l~~  154 (309)
                      ++..+.+|.++|.|+++.+++ ..+++|+.||+|+.|++....        ......+.+|.+.++.+++++ ....|++
T Consensus       336 pi~tfraH~gPVl~v~v~~n~-~~~ysgg~Dg~I~~w~~p~n~dp~ds~dp~vl~~~l~Ghtdavw~l~~s~-~~~~Lls  413 (577)
T KOG0642|consen  336 PILTFRAHEGPVLCVVVPSNG-EHCYSGGIDGTIRCWNLPPNQDPDDSYDPSVLSGTLLGHTDAVWLLALSS-TKDRLLS  413 (577)
T ss_pred             eeEEEecccCceEEEEecCCc-eEEEeeccCceeeeeccCCCCCcccccCcchhccceeccccceeeeeecc-cccceee
Confidence            788999999999999999988 889999999999999764211        123456789999999999999 8889999


Q ss_pred             EcCCCcEEEEecCCCCC--CCC------------------------------------CCceeeec-------cCCCCee
Q 021657          155 GSADNSVRMFDRRNLTS--NGV------------------------------------GSPINKFE-------GHSAAVL  189 (309)
Q Consensus       155 ~~~dg~i~i~d~~~~~~--~~~------------------------------------~~~~~~~~-------~~~~~v~  189 (309)
                      ++.||++|.|+......  .+.                                    ...+..+.       .....++
T Consensus       414 cs~DgTvr~w~~~~~~~~~f~~~~e~g~Plsvd~~ss~~a~~~~s~~~~~~~~~~~ev~s~~~~~~s~~~~~~~~~~~in  493 (577)
T KOG0642|consen  414 CSSDGTVRLWEPTEESPCTFGEPKEHGYPLSVDRTSSRPAHSLASFRFGYTSIDDMEVVSDLLIFESSASPGPRRYPQIN  493 (577)
T ss_pred             ecCCceEEeeccCCcCccccCCccccCCcceEeeccchhHhhhhhcccccccchhhhhhhheeeccccCCCcccccCccc
Confidence            99999999999765322  000                                    00000000       0113466


Q ss_pred             EEEEecCCCcEEEEecCCCcEEEEeCCcccccccCCCCCcCCCCceeeeecCCCcceeeEEEccCCCeEEEEecCCCCCC
Q 021657          190 CVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKVVDFHWNASDPWTVVSVSDDCDST  269 (309)
Q Consensus       190 ~~~~~~~~~~l~~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~s~d~~s~  269 (309)
                      .+.++|.+.. ..++..|+.|+++|...               ..++.....|...++++++.|++.+++        +|
T Consensus       494 ~vVs~~~~~~-~~~~hed~~Ir~~dn~~---------------~~~l~s~~a~~~svtslai~~ng~~l~--------s~  549 (577)
T KOG0642|consen  494 KVVSHPTADI-TFTAHEDRSIRFFDNKT---------------GKILHSMVAHKDSVTSLAIDPNGPYLM--------SG  549 (577)
T ss_pred             eEEecCCCCe-eEecccCCceecccccc---------------cccchheeeccceecceeecCCCceEE--------ee
Confidence            7888888885 45999999999999988               556778889999999999999999877        77


Q ss_pred             CCCCeEEEEEccccccCChhhHhHhhhccc
Q 021657          270 GGGGTLQIWRMSDLIYRPQDEVLAELEKFK  299 (309)
Q Consensus       270 ~~dg~v~vw~~~~~~~~~~~~~~~~~~~h~  299 (309)
                      +.|+.+++|.+.      ...++.+...|+
T Consensus       550 s~d~sv~l~kld------~k~~~~es~~~r  573 (577)
T KOG0642|consen  550 SHDGSVRLWKLD------VKTCVLESTAHR  573 (577)
T ss_pred             cCCceeehhhcc------chheeecccccc
Confidence            777999999998      456666666554

>KOG0294 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.92  E-value=6.8e-23  Score=150.42  Aligned_cols=191  Identities=16%  Similarity=0.246  Sum_probs=147.5

Q ss_pred             CcccccccccCCeEEEEEecCCCcEEEEEcCCCeEEEEEcCCCCcceEEEeeccCCceeEEEeccCCCC--eEEEEcCCC
Q 021657           82 GPRGIYNGHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDN--LILTGSADN  159 (309)
Q Consensus        82 ~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~--~l~~~~~dg  159 (309)
                      .++..+..|.+.|++++.+  + .++++|+.|-+|+|||++...  ....+..|.+.|+++.|.+ ...  .|++|+.||
T Consensus        34 ~~lF~~~aH~~sitavAVs--~-~~~aSGssDetI~IYDm~k~~--qlg~ll~HagsitaL~F~~-~~S~shLlS~sdDG  107 (362)
T KOG0294|consen   34 KPLFAFSAHAGSITALAVS--G-PYVASGSSDETIHIYDMRKRK--QLGILLSHAGSITALKFYP-PLSKSHLLSGSDDG  107 (362)
T ss_pred             eccccccccccceeEEEec--c-eeEeccCCCCcEEEEeccchh--hhcceeccccceEEEEecC-CcchhheeeecCCC
Confidence            4456678899999999985  3 789999999999999998877  5677778999999999988 443  899999999


Q ss_pred             cEEEEecCCCCCCCCCCceeeeccCCCCeeEEEEecCCCcEEEEecCCCcEEEEeCCcccccccCCCCCcCCCCceeeee
Q 021657          160 SVRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQH  239 (309)
Q Consensus       160 ~i~i~d~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~  239 (309)
                      .|.+|+...      ...+.++++|.+.|+.++++|.++ |..+.+.|+.+++||+-.....             .+..+
T Consensus       108 ~i~iw~~~~------W~~~~slK~H~~~Vt~lsiHPS~K-LALsVg~D~~lr~WNLV~Gr~a-------------~v~~L  167 (362)
T KOG0294|consen  108 HIIIWRVGS------WELLKSLKAHKGQVTDLSIHPSGK-LALSVGGDQVLRTWNLVRGRVA-------------FVLNL  167 (362)
T ss_pred             cEEEEEcCC------eEEeeeecccccccceeEecCCCc-eEEEEcCCceeeeehhhcCccc-------------eeecc
Confidence            999999999      999999999999999999999999 4557788999999998662111             01111


Q ss_pred             cCCCcceeeEEEccCCCeEEEEecCC-------------------------------CCCCCCCCeEEEEEccccccCCh
Q 021657          240 AGHRDKVVDFHWNASDPWTVVSVSDD-------------------------------CDSTGGGGTLQIWRMSDLIYRPQ  288 (309)
Q Consensus       240 ~~~~~~v~~~~~~~~~~~~~~s~s~d-------------------------------~~s~~~dg~v~vw~~~~~~~~~~  288 (309)
                      . +  .-..+.|+|.|.++++.+.+-                               +.+|+.|+.|.+||.+      .
T Consensus       168 ~-~--~at~v~w~~~Gd~F~v~~~~~i~i~q~d~A~v~~~i~~~~r~l~~~~l~~~~L~vG~d~~~i~~~D~d------s  238 (362)
T KOG0294|consen  168 K-N--KATLVSWSPQGDHFVVSGRNKIDIYQLDNASVFREIENPKRILCATFLDGSELLVGGDNEWISLKDTD------S  238 (362)
T ss_pred             C-C--cceeeEEcCCCCEEEEEeccEEEEEecccHhHhhhhhccccceeeeecCCceEEEecCCceEEEeccC------C
Confidence            1 1  112245555544433333211                               0177788999999999      6


Q ss_pred             hhHhHhhhcccceEEEeee
Q 021657          289 DEVLAELEKFKAHVISCTS  307 (309)
Q Consensus       289 ~~~~~~~~~h~~~v~~~~~  307 (309)
                      ..++..+.+|..+|-++.+
T Consensus       239 ~~~~~~~~AH~~RVK~i~~  257 (362)
T KOG0294|consen  239 DTPLTEFLAHENRVKDIAS  257 (362)
T ss_pred             CccceeeecchhheeeeEE
Confidence            7888899999998877763

>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]

Probab=99.91  E-value=4e-23  Score=160.68  Aligned_cols=248  Identities=18%  Similarity=0.294  Sum_probs=181.1

Q ss_pred             ccCCCCCcceEEEEECCCCCEEEEecCCCcEEEEeCCccccccccCCccccccCCCCceeecCCCCCCCCcccCCCCCcC
Q 021657            3 ILTGHQDNAEFALAMCPTEPYVLSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVG   82 (309)
Q Consensus         3 ~l~~H~~~~V~~~~~~~~~~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   82 (309)
                      +..||.+ ..+.++.+|+.+.++|++.|+.+++|+-...+-... ......+.+..... .++.+...+...+.+.++..
T Consensus       363 ~v~gh~d-elwgla~hps~~q~~T~gqdk~v~lW~~~k~~wt~~-~~d~~~~~~fhpsg-~va~Gt~~G~w~V~d~e~~~  439 (626)
T KOG2106|consen  363 TVQGHGD-ELWGLATHPSKNQLLTCGQDKHVRLWNDHKLEWTKI-IEDPAECADFHPSG-VVAVGTATGRWFVLDTETQD  439 (626)
T ss_pred             EEEeccc-ceeeEEcCCChhheeeccCcceEEEccCCceeEEEE-ecCceeEeeccCcc-eEEEeeccceEEEEecccce
Confidence            3468988 899999999999999999999999999222211111 11111122222222 45556667777788888866


Q ss_pred             cccccccccCCeEEEEEecCCCcEEEEEcCCCeEEEEEcCCCCcceEEEeeccCCceeEEEeccCCCCeEEEEcCCCcEE
Q 021657           83 PRGIYNGHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVR  162 (309)
Q Consensus        83 ~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~  162 (309)
                      .+..-.. +.++++++|+|+| .+||.|+.|+.|+||-+..........-+.+..+|+.+.|++ +++++.+-+.|-.|.
T Consensus       440 lv~~~~d-~~~ls~v~ysp~G-~~lAvgs~d~~iyiy~Vs~~g~~y~r~~k~~gs~ithLDwS~-Ds~~~~~~S~d~eiL  516 (626)
T KOG2106|consen  440 LVTIHTD-NEQLSVVRYSPDG-AFLAVGSHDNHIYIYRVSANGRKYSRVGKCSGSPITHLDWSS-DSQFLVSNSGDYEIL  516 (626)
T ss_pred             eEEEEec-CCceEEEEEcCCC-CEEEEecCCCeEEEEEECCCCcEEEEeeeecCceeEEeeecC-CCceEEeccCceEEE
Confidence            5554444 8899999999999 899999999999999998776545555455668999999999 999999999999999


Q ss_pred             EEecCCCCCCCCCCceeeec---------------cCCCCeeEEEEecCCCcEEEEecCCCcEEEEeCCcccccccCCCC
Q 021657          163 MFDRRNLTSNGVGSPINKFE---------------GHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPR  227 (309)
Q Consensus       163 i~d~~~~~~~~~~~~~~~~~---------------~~~~~v~~~~~~~~~~~l~~~~~~dg~i~iwd~~~~~~~~~~~~~  227 (309)
                      +|......+   ...++.++               .+...|+.++-+.+.+ ++|+|.+.|.|++|...-.         
T Consensus       517 yW~~~~~~~---~ts~kDvkW~t~~c~lGF~v~g~s~~t~i~a~~rs~~~~-~lA~gdd~g~v~lf~yPc~---------  583 (626)
T KOG2106|consen  517 YWKPSECKQ---ITSVKDVKWATYTCTLGFEVFGGSDGTDINAVARSHCEK-LLASGDDFGKVHLFSYPCS---------  583 (626)
T ss_pred             EEccccCcc---cceecceeeeeeEEEEEEEEecccCCchHHHhhhhhhhh-hhhccccCceEEEEccccC---------
Confidence            994433111   11111111               2344566666666666 6889999999999998751         


Q ss_pred             CcCCCCceeeeecCCCcceeeEEEccCCCeEEEEecCCCCCCCCCCeEEEEEc
Q 021657          228 TTNYPAGLFFQHAGHRDKVVDFHWNASDPWTVVSVSDDCDSTGGGGTLQIWRM  280 (309)
Q Consensus       228 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~s~d~~s~~~dg~v~vw~~  280 (309)
                         .+.....++.+|+..|++++|..++..++        +.+.|..|..|++
T Consensus       584 ---s~rA~~he~~ghs~~vt~V~Fl~~d~~li--------~tg~D~Si~qW~l  625 (626)
T KOG2106|consen  584 ---SPRAPSHEYGGHSSHVTNVAFLCKDSHLI--------STGKDTSIMQWRL  625 (626)
T ss_pred             ---CCcccceeeccccceeEEEEEeeCCceEE--------ecCCCceEEEEEe
Confidence               23456778899999999999999888777        4447799999987

>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]

Probab=99.91  E-value=8.5e-22  Score=153.38  Aligned_cols=278  Identities=17%  Similarity=0.228  Sum_probs=193.8

Q ss_pred             cccCCCCCcceEEEEECCCCCEEEEecCCC--------cEEEEeCCccccccc---cCCc---cccccCCCCceeecCCC
Q 021657            2 EILTGHQDNAEFALAMCPTEPYVLSGGKDK--------SVVLWSIQDHITSSA---TDPA---TAKSAGSSGSIIKQSPK   67 (309)
Q Consensus         2 ~~l~~H~~~~V~~~~~~~~~~~l~t~~~dg--------~i~vwd~~~~~~~~~---~~~~---~~~~~~~~~~~~~~~~~   67 (309)
                      |-+.||.. .|.|++.+|+.-++++|-.-|        .+|+||..+......   +...   ...+....+........
T Consensus        98 r~y~GH~d-dikc~~vHPdri~vatGQ~ag~~g~~~~phvriWdsv~L~TL~V~g~f~~GV~~vaFsk~~~G~~l~~vD~  176 (626)
T KOG2106|consen   98 RHYLGHND-DIKCMAVHPDRIRVATGQGAGTSGRPLQPHVRIWDSVTLSTLHVIGFFDRGVTCVAFSKINGGSLLCAVDD  176 (626)
T ss_pred             ccccCCCC-ceEEEeecCCceeeccCcccccCCCcCCCeeeecccccceeeeeeccccccceeeeecccCCCceEEEecC
Confidence            35678999 799999999998888776555        499999554321111   1111   01123344555666666


Q ss_pred             CCCCCcccCCCCCcCcccccccccCCeEEEEEecCCCcEEEEEcCCCeEEEEEcCCCCcceE-EEee-ccCCceeEEEec
Q 021657           68 PGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPVI-KVEK-AHDADLHCVDWN  145 (309)
Q Consensus        68 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~-~~~~-~~~~~v~~~~~~  145 (309)
                      .....+.+|+............-+..|....|+|.+++++++++. |.+..|+++.+..... -.+. ..+..|.|++|.
T Consensus       177 s~~h~lSVWdWqk~~~~~~vk~sne~v~~a~FHPtd~nliit~Gk-~H~~Fw~~~~~~l~k~~~~fek~ekk~Vl~v~F~  255 (626)
T KOG2106|consen  177 SNPHMLSVWDWQKKAKLGPVKTSNEVVFLATFHPTDPNLIITCGK-GHLYFWTLRGGSLVKRQGIFEKREKKFVLCVTFL  255 (626)
T ss_pred             CCccccchhhchhhhccCcceeccceEEEEEeccCCCcEEEEeCC-ceEEEEEccCCceEEEeeccccccceEEEEEEEc
Confidence            777888899988888887788888889999999999887777764 7899999987762111 1122 233679999999


Q ss_pred             cCCCCeEEEEcCCCcEEEEecCCCCCCCCCCceeeeccCCCCeeEEEEecCCCcEEEEecCCCcEEEEeCCcccccccCC
Q 021657          146 PLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQG  225 (309)
Q Consensus       146 ~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~dg~i~iwd~~~~~~~~~~~  225 (309)
                      + ++ -+++|..+|.|.||+.++      .+..+....|.+.|.+++...+|. |+ +|+.|..|..||- ...+.....
T Consensus       256 e-ng-dviTgDS~G~i~Iw~~~~------~~~~k~~~aH~ggv~~L~~lr~Gt-ll-SGgKDRki~~Wd~-~y~k~r~~e  324 (626)
T KOG2106|consen  256 E-NG-DVITGDSGGNILIWSKGT------NRISKQVHAHDGGVFSLCMLRDGT-LL-SGGKDRKIILWDD-NYRKLRETE  324 (626)
T ss_pred             C-CC-CEEeecCCceEEEEeCCC------ceEEeEeeecCCceEEEEEecCcc-Ee-ecCccceEEeccc-ccccccccc
Confidence            8 55 478999999999999987      666666669999999999999998 45 7999999999993 222221111


Q ss_pred             CCCcCC--------------------------CCceeeeecCCCcceeeEEEccCCCeEEEEecCCCCCCCCCCeEEEEE
Q 021657          226 PRTTNY--------------------------PAGLFFQHAGHRDKVVDFHWNASDPWTVVSVSDDCDSTGGGGTLQIWR  279 (309)
Q Consensus       226 ~~~~~~--------------------------~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~s~d~~s~~~dg~v~vw~  279 (309)
                      -.....                          ....-....+|......++.+|+.+.++        |++.|+.+++|+
T Consensus       325 lPe~~G~iRtv~e~~~di~vGTtrN~iL~Gt~~~~f~~~v~gh~delwgla~hps~~q~~--------T~gqdk~v~lW~  396 (626)
T KOG2106|consen  325 LPEQFGPIRTVAEGKGDILVGTTRNFILQGTLENGFTLTVQGHGDELWGLATHPSKNQLL--------TCGQDKHVRLWN  396 (626)
T ss_pred             CchhcCCeeEEecCCCcEEEeeccceEEEeeecCCceEEEEecccceeeEEcCCChhhee--------eccCcceEEEcc
Confidence            111000                          0011223467888999999999888766        777779999999


Q ss_pred             ccccccCChhhHhHhhhcccceEEEeeeCC
Q 021657          280 MSDLIYRPQDEVLAELEKFKAHVISCTSKP  309 (309)
Q Consensus       280 ~~~~~~~~~~~~~~~~~~h~~~v~~~~~~P  309 (309)
                       .       .+++.+. ...+++.++.|||
T Consensus       397 -~-------~k~~wt~-~~~d~~~~~~fhp  417 (626)
T KOG2106|consen  397 -D-------HKLEWTK-IIEDPAECADFHP  417 (626)
T ss_pred             -C-------CceeEEE-EecCceeEeeccC
Confidence             3       1222222 2346677777776

>KOG2055 consensus WD40 repeat protein [General function prediction only]

Probab=99.91  E-value=1.6e-22  Score=155.61  Aligned_cols=245  Identities=12%  Similarity=0.222  Sum_probs=176.4

Q ss_pred             ceEEEEECCCCC-EEEEecCCCcEEEEeCCccccccccCCcccc-----ccCCCCceeecCCCCCCCCcccCCCCCcCcc
Q 021657           11 AEFALAMCPTEP-YVLSGGKDKSVVLWSIQDHITSSATDPATAK-----SAGSSGSIIKQSPKPGDGNDKAADGPSVGPR   84 (309)
Q Consensus        11 ~V~~~~~~~~~~-~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   84 (309)
                      +|.+.+|+|+|. .+++++....++.||+.+.....-..+....     ..........+......+.+.+....+++.+
T Consensus       259 Pi~~a~f~p~G~~~i~~s~rrky~ysyDle~ak~~k~~~~~g~e~~~~e~FeVShd~~fia~~G~~G~I~lLhakT~eli  338 (514)
T KOG2055|consen  259 PIQKAEFAPNGHSVIFTSGRRKYLYSYDLETAKVTKLKPPYGVEEKSMERFEVSHDSNFIAIAGNNGHIHLLHAKTKELI  338 (514)
T ss_pred             ccceeeecCCCceEEEecccceEEEEeeccccccccccCCCCcccchhheeEecCCCCeEEEcccCceEEeehhhhhhhh
Confidence            899999999998 8999999999999999876332221111111     1111111124444556677888888888777


Q ss_pred             cccccccCCeEEEEEecCCCcEEEEEcCCCeEEEEEcCCCCcceEEEeeccC-CceeEEEeccCCCCeEEEEcCCCcEEE
Q 021657           85 GIYNGHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPVIKVEKAHD-ADLHCVDWNPLDDNLILTGSADNSVRM  163 (309)
Q Consensus        85 ~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~-~~v~~~~~~~~~~~~l~~~~~dg~i~i  163 (309)
                      ..++ -.+.|.+++|+.++ ..|++++.+|.|.+||+++..  +...+.... -.-+++|.++ ++.+||+|+..|.|.|
T Consensus       339 ~s~K-ieG~v~~~~fsSds-k~l~~~~~~GeV~v~nl~~~~--~~~rf~D~G~v~gts~~~S~-ng~ylA~GS~~GiVNI  413 (514)
T KOG2055|consen  339 TSFK-IEGVVSDFTFSSDS-KELLASGGTGEVYVWNLRQNS--CLHRFVDDGSVHGTSLCISL-NGSYLATGSDSGIVNI  413 (514)
T ss_pred             heee-eccEEeeEEEecCC-cEEEEEcCCceEEEEecCCcc--eEEEEeecCccceeeeeecC-CCceEEeccCcceEEE
Confidence            7665 46789999999998 677777889999999999886  566554322 2346777788 9999999999999999


Q ss_pred             EecCCCCCCCCCCceeeeccCCCCeeEEEEecCCCcEEEEecC--CCcEEEEeCCcccccccCCCCCcCCCCceeeeecC
Q 021657          164 FDRRNLTSNGVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAE--DGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAG  241 (309)
Q Consensus       164 ~d~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~--dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~  241 (309)
                      ||..+.......+++..+......|++|+|+++.+ +||.++.  ...+++-.+... .....      +|.     ...
T Consensus       414 Yd~~s~~~s~~PkPik~~dNLtt~Itsl~Fn~d~q-iLAiaS~~~knalrLVHvPS~-TVFsN------fP~-----~n~  480 (514)
T KOG2055|consen  414 YDGNSCFASTNPKPIKTVDNLTTAITSLQFNHDAQ-ILAIASRVKKNALRLVHVPSC-TVFSN------FPT-----SNT  480 (514)
T ss_pred             eccchhhccCCCCchhhhhhhheeeeeeeeCcchh-hhhhhhhccccceEEEeccce-eeecc------CCC-----CCC
Confidence            99876555445788888888888999999999999 5666663  567888777651 11111      110     122


Q ss_pred             CCcceeeEEEccCCCeEEEEecCCCCCCCCCCeEEEEEcc
Q 021657          242 HRDKVVDFHWNASDPWTVVSVSDDCDSTGGGGTLQIWRMS  281 (309)
Q Consensus       242 ~~~~v~~~~~~~~~~~~~~s~s~d~~s~~~dg~v~vw~~~  281 (309)
                      .-+.|++++|+|.+.+++        .|..+|.+.+|.+.
T Consensus       481 ~vg~vtc~aFSP~sG~lA--------vGNe~grv~l~kL~  512 (514)
T KOG2055|consen  481 KVGHVTCMAFSPNSGYLA--------VGNEAGRVHLFKLH  512 (514)
T ss_pred             cccceEEEEecCCCceEE--------eecCCCceeeEeec
Confidence            335689999999888765        55566999999986

>KOG1310 consensus WD40 repeat protein [General function prediction only]

Probab=99.91  E-value=5.3e-23  Score=161.75  Aligned_cols=232  Identities=17%  Similarity=0.267  Sum_probs=169.0

Q ss_pred             cccCCCCCcceEEEEECCCCCEEEEecCCCcEEEEeCCccccccccCCccccccCCCCceeecCCCCCCCCcccCCCCCc
Q 021657            2 EILTGHQDNAEFALAMCPTEPYVLSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSV   81 (309)
Q Consensus         2 ~~l~~H~~~~V~~~~~~~~~~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (309)
                      +.|.||++ .|.|++|+.+|.+|++||.|-.+.|||.-.                                        .
T Consensus        44 ~eL~GH~G-CVN~LeWn~dG~lL~SGSDD~r~ivWd~~~----------------------------------------~   82 (758)
T KOG1310|consen   44 AELTGHTG-CVNCLEWNADGELLASGSDDTRLIVWDPFE----------------------------------------Y   82 (758)
T ss_pred             hhhccccc-eecceeecCCCCEEeecCCcceEEeecchh----------------------------------------c
Confidence            46899999 999999999999999999999999999863                                        2


Q ss_pred             Cccc-ccccccCCeEEEEEecC-CCcEEEEEcCCCeEEEEEcCCCC--------cceEEEeeccCCceeEEEeccCCCCe
Q 021657           82 GPRG-IYNGHEDTVEDVTFCPS-SAQEFCSVGDDSCLILWDARVGT--------SPVIKVEKAHDADLHCVDWNPLDDNL  151 (309)
Q Consensus        82 ~~~~-~~~~~~~~v~~~~~~~~-~~~~l~s~~~dg~i~iwd~~~~~--------~~~~~~~~~~~~~v~~~~~~~~~~~~  151 (309)
                      +++. .-.+|...|.++.|-|. +..++++|..|..|+++|+...+        ......+..|...|..++-.|...+.
T Consensus        83 KllhsI~TgHtaNIFsvKFvP~tnnriv~sgAgDk~i~lfdl~~~~~~~~d~~~~~~~~~~~cht~rVKria~~p~~Pht  162 (758)
T KOG1310|consen   83 KLLHSISTGHTANIFSVKFVPYTNNRIVLSGAGDKLIKLFDLDSSKEGGMDHGMEETTRCWSCHTDRVKRIATAPNGPHT  162 (758)
T ss_pred             ceeeeeecccccceeEEeeeccCCCeEEEeccCcceEEEEecccccccccccCccchhhhhhhhhhhhhheecCCCCCce
Confidence            2222 23589999999999985 34789999999999999997421        12344556788899999999955599


Q ss_pred             EEEEcCCCcEEEEecCCCCCCCC----CCceeeeccCCCCeeEEEEecCCCcEEEEecCCCcEEEEeCCcccccccCCCC
Q 021657          152 ILTGSADNSVRMFDRRNLTSNGV----GSPINKFEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPR  227 (309)
Q Consensus       152 l~~~~~dg~i~i~d~~~~~~~~~----~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~dg~i~iwd~~~~~~~~~~~~~  227 (309)
                      +.+++.||+|+-+|+|.+.....    ...+..+...--...++.++|..+++||+|+.|-..++||.+...+.......
T Consensus       163 fwsasEDGtirQyDiREph~c~p~~~~~~~l~ny~~~lielk~ltisp~rp~~laVGgsdpfarLYD~Rr~lks~~s~~~  242 (758)
T KOG1310|consen  163 FWSASEDGTIRQYDIREPHVCNPDEDCPSILVNYNPQLIELKCLTISPSRPYYLAVGGSDPFARLYDRRRVLKSFRSDGT  242 (758)
T ss_pred             EEEecCCcceeeecccCCccCCccccccHHHHHhchhhheeeeeeecCCCCceEEecCCCchhhhhhhhhhccCCCCCcc
Confidence            99999999999999998532111    11122222223456789999999999999999999999997654443333222


Q ss_pred             CcCCCC---ceeeee-cCCC-----------cceeeEEEccCCCeEEEEecCCCCCCCCCCeEEEEEccc
Q 021657          228 TTNYPA---GLFFQH-AGHR-----------DKVVDFHWNASDPWTVVSVSDDCDSTGGGGTLQIWRMSD  282 (309)
Q Consensus       228 ~~~~~~---~~~~~~-~~~~-----------~~v~~~~~~~~~~~~~~s~s~d~~s~~~dg~v~vw~~~~  282 (309)
                      ....+.   .++..+ .+|.           ..++-++|+|+|..++++-+.+        .|+++|+..
T Consensus       243 ~~~~pp~~~~cv~yf~p~hlkn~~gn~~~~~~~~t~vtfnpNGtElLvs~~gE--------hVYlfdvn~  304 (758)
T KOG1310|consen  243 MNTCPPKDCRCVRYFSPGHLKNSQGNLDRYITCCTYVTFNPNGTELLVSWGGE--------HVYLFDVNE  304 (758)
T ss_pred             ccCCCCcccchhheecCccccCcccccccceeeeEEEEECCCCcEEEEeeCCe--------EEEEEeecC
Confidence            221111   111111 1121           1257789999999999987776        899999985

>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]

Probab=99.91  E-value=2.4e-22  Score=146.50  Aligned_cols=248  Identities=19%  Similarity=0.266  Sum_probs=181.0

Q ss_pred             CCCCCcceEEEEECC-CCCEEEEecCCCcEEEEeCCccccccccCCcccc---c-cCCCCceeecCCCCCCCCcccCCCC
Q 021657            5 TGHQDNAEFALAMCP-TEPYVLSGGKDKSVVLWSIQDHITSSATDPATAK---S-AGSSGSIIKQSPKPGDGNDKAADGP   79 (309)
Q Consensus         5 ~~H~~~~V~~~~~~~-~~~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~---~-~~~~~~~~~~~~~~~~~~~~~~~~~   79 (309)
                      .+|+- .|.++.|.| |...+.+++.|.+++|||..+......+.-....   . ......-..++.+..+..+++-|+.
T Consensus        98 ~~Hky-~iss~~WyP~DtGmFtssSFDhtlKVWDtnTlQ~a~~F~me~~VYshamSp~a~sHcLiA~gtr~~~VrLCDi~  176 (397)
T KOG4283|consen   98 NGHKY-AISSAIWYPIDTGMFTSSSFDHTLKVWDTNTLQEAVDFKMEGKVYSHAMSPMAMSHCLIAAGTRDVQVRLCDIA  176 (397)
T ss_pred             cccee-eeeeeEEeeecCceeecccccceEEEeecccceeeEEeecCceeehhhcChhhhcceEEEEecCCCcEEEEecc
Confidence            57888 899999999 6678889999999999999887544444332222   1 1112223456667888999999999


Q ss_pred             CcCcccccccccCCeEEEEEecCCCcEEEEEcCCCeEEEEEcCCCC-------------cceEEEeeccCCceeEEEecc
Q 021657           80 SVGPRGIYNGHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGT-------------SPVIKVEKAHDADLHCVDWNP  146 (309)
Q Consensus        80 ~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~-------------~~~~~~~~~~~~~v~~~~~~~  146 (309)
                      .+...+.+.+|.+.|.++.|+|..+..|++|+.||.|++||++...             .+..+...+|.+.+..++|..
T Consensus       177 SGs~sH~LsGHr~~vlaV~Wsp~~e~vLatgsaDg~irlWDiRrasgcf~~lD~hn~k~~p~~~~n~ah~gkvngla~tS  256 (397)
T KOG4283|consen  177 SGSFSHTLSGHRDGVLAVEWSPSSEWVLATGSADGAIRLWDIRRASGCFRVLDQHNTKRPPILKTNTAHYGKVNGLAWTS  256 (397)
T ss_pred             CCcceeeeccccCceEEEEeccCceeEEEecCCCceEEEEEeecccceeEEeecccCccCccccccccccceeeeeeecc
Confidence            9999999999999999999999988899999999999999997541             122333457888999999999


Q ss_pred             CCCCeEEEEcCCCcEEEEecCCCCCCC--CCCceeeeccCCCCeeEEEEecCCCcEEEEecCCCcEEEEeCCcccccccC
Q 021657          147 LDDNLILTGSADNSVRMFDRRNLTSNG--VGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQ  224 (309)
Q Consensus       147 ~~~~~l~~~~~dg~i~i~d~~~~~~~~--~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~dg~i~iwd~~~~~~~~~~  224 (309)
                       ++.++++.+.|..+++|+..+.....  .++.+..-.. .-.+. +. +-+.. +++---.++.+.++.+-.       
T Consensus       257 -d~~~l~~~gtd~r~r~wn~~~G~ntl~~~g~~~~n~~~-~~~~~-~~-~~~s~-vfv~~p~~~~lall~~~s-------  324 (397)
T KOG4283|consen  257 -DARYLASCGTDDRIRVWNMESGRNTLREFGPIIHNQTT-SFAVH-IQ-SMDSD-VFVLFPNDGSLALLNLLE-------  324 (397)
T ss_pred             -cchhhhhccCccceEEeecccCcccccccccccccccc-cceEE-Ee-ecccc-eEEEEecCCeEEEEEccC-------
Confidence             99999999999999999998732100  0111111111 11111 22 22222 333334458888888876       


Q ss_pred             CCCCcCCCCceeeeecCCCcceeeEEEccCCCeEEEEecCCCCCCCCCCeEEEEEcc
Q 021657          225 GPRTTNYPAGLFFQHAGHRDKVVDFHWNASDPWTVVSVSDDCDSTGGGGTLQIWRMS  281 (309)
Q Consensus       225 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~s~d~~s~~~dg~v~vw~~~  281 (309)
                              ...+..+..|...|.+.++-|+-+...        +|..|+.+..|-..
T Consensus       325 --------gs~ir~l~~h~k~i~c~~~~~~fq~~~--------tg~~d~ni~~w~p~  365 (397)
T KOG4283|consen  325 --------GSFVRRLSTHLKRINCAAYRPDFEQCF--------TGDMNGNIYMWSPA  365 (397)
T ss_pred             --------ceEEEeeecccceeeEEeecCchhhhh--------ccccCCcccccccc
Confidence                    455667788888999999999888877        88888999999874

>KOG1539 consensus WD repeat protein [General function prediction only]

Probab=99.90  E-value=1.3e-22  Score=166.61  Aligned_cols=265  Identities=12%  Similarity=0.200  Sum_probs=193.1

Q ss_pred             cccCCCCCcceEEEEEC-CCCCEEEEecCCCcEEEEeCCccccccccCC---------ccccccCC--CCcee-------
Q 021657            2 EILTGHQDNAEFALAMC-PTEPYVLSGGKDKSVVLWSIQDHITSSATDP---------ATAKSAGS--SGSII-------   62 (309)
Q Consensus         2 ~~l~~H~~~~V~~~~~~-~~~~~l~t~~~dg~i~vwd~~~~~~~~~~~~---------~~~~~~~~--~~~~~-------   62 (309)
                      |.-.||.. |-.|+.|. .+|..+.+++.|++.+.+++...........         ........  ...+.       
T Consensus       328 R~R~GHs~-Pp~~irfy~~~g~~ilsa~~Drt~r~fs~~~e~~~~~l~~~~~~~~~kk~~~~~~~~~k~p~i~~fa~~~~  406 (910)
T KOG1539|consen  328 RSRGGHSA-PPSCIRFYGSQGHFILSAKQDRTLRSFSVISESQSQELGQLHNKKRAKKVNVFSTEKLKLPPIVEFAFENA  406 (910)
T ss_pred             eeccCCCC-CchheeeeccCcEEEEecccCcchhhhhhhHHHHhHhhcccccccccccccccchhhhcCCcceeeecccc
Confidence            44468999 77999998 5788999999999999998764311111100         00000000  00000       


Q ss_pred             -------ecCCCCCCCCcccCCCCCcCc-cccc-----ccccCCeEEEEEecCCCcEEEEEcCCCeEEEEEcCCCCcceE
Q 021657           63 -------KQSPKPGDGNDKAADGPSVGP-RGIY-----NGHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPVI  129 (309)
Q Consensus        63 -------~~~~~~~~~~~~~~~~~~~~~-~~~~-----~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~  129 (309)
                             ....-.+....+.|+..+... ...+     +.....+++++.++-| ++.+.|+..|.|-+|++.++-  ..
T Consensus       407 RE~~W~Nv~~~h~~~~~~~tW~~~n~~~G~~~L~~~~~~~~~~~~~av~vs~CG-NF~~IG~S~G~Id~fNmQSGi--~r  483 (910)
T KOG1539|consen  407 REKEWDNVITAHKGKRSAYTWNFRNKTSGRHVLDPKRFKKDDINATAVCVSFCG-NFVFIGYSKGTIDRFNMQSGI--HR  483 (910)
T ss_pred             hhhhhcceeEEecCcceEEEEeccCcccccEEecCccccccCcceEEEEEeccC-ceEEEeccCCeEEEEEcccCe--ee
Confidence                   111112234455666555443 1112     2234678999999998 889999999999999999887  45


Q ss_pred             EEe---eccCCceeEEEeccCCCCeEEEEcCCCcEEEEecCCCCCCCCCCceeeeccCCCCeeEEEEecCCCcEEEEecC
Q 021657          130 KVE---KAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAE  206 (309)
Q Consensus       130 ~~~---~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~  206 (309)
                      ..+   ..|..+|+.++.+. .++.+++++.+|.+.+||...      ..++..+. ....+..+..+.... ++|.+.+
T Consensus       484 ~sf~~~~ah~~~V~gla~D~-~n~~~vsa~~~Gilkfw~f~~------k~l~~~l~-l~~~~~~iv~hr~s~-l~a~~~d  554 (910)
T KOG1539|consen  484 KSFGDSPAHKGEVTGLAVDG-TNRLLVSAGADGILKFWDFKK------KVLKKSLR-LGSSITGIVYHRVSD-LLAIALD  554 (910)
T ss_pred             cccccCccccCceeEEEecC-CCceEEEccCcceEEEEecCC------cceeeeec-cCCCcceeeeeehhh-hhhhhcC
Confidence            555   58999999999998 888999999999999999998      66666666 356678888888777 5789999


Q ss_pred             CCcEEEEeCCcccccccCCCCCcCCCCceeeeecCCCcceeeEEEccCCCeEEEEecCCCCCCCCCCeEEEEEccccccC
Q 021657          207 DGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKVVDFHWNASDPWTVVSVSDDCDSTGGGGTLQIWRMSDLIYR  286 (309)
Q Consensus       207 dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~s~d~~s~~~dg~v~vw~~~~~~~~  286 (309)
                      |-.|+++|+.+               ...+..+.+|...|++++|||++.+++        +++.|++|++||+.     
T Consensus       555 df~I~vvD~~t---------------~kvvR~f~gh~nritd~~FS~DgrWli--------sasmD~tIr~wDlp-----  606 (910)
T KOG1539|consen  555 DFSIRVVDVVT---------------RKVVREFWGHGNRITDMTFSPDGRWLI--------SASMDSTIRTWDLP-----  606 (910)
T ss_pred             ceeEEEEEchh---------------hhhhHHhhccccceeeeEeCCCCcEEE--------EeecCCcEEEEecc-----
Confidence            99999999987               456778899999999999999999877        66667999999998     


Q ss_pred             ChhhHhHhhhcccceEEEeeeCC
Q 021657          287 PQDEVLAELEKFKAHVISCTSKP  309 (309)
Q Consensus       287 ~~~~~~~~~~~h~~~v~~~~~~P  309 (309)
                       ++.++-.+. -..+..++.|+|
T Consensus       607 -t~~lID~~~-vd~~~~sls~SP  627 (910)
T KOG1539|consen  607 -TGTLIDGLL-VDSPCTSLSFSP  627 (910)
T ss_pred             -CcceeeeEe-cCCcceeeEECC
Confidence             566655443 456777888777

>KOG4227 consensus WD40 repeat protein [General function prediction only]

Probab=99.90  E-value=5.5e-22  Score=150.19  Aligned_cols=178  Identities=17%  Similarity=0.271  Sum_probs=139.0

Q ss_pred             cccCCCCCcceEEEEECCCCCEEEEecCCCcEEEEeCCccccccccCCccccccCCCCceeecCCCCCCCCcccCCCCCc
Q 021657            2 EILTGHQDNAEFALAMCPTEPYVLSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSV   81 (309)
Q Consensus         2 ~~l~~H~~~~V~~~~~~~~~~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (309)
                      +.+.+|.+ .|.++.|+.++++|++|+.|..++||+++......                                  +.
T Consensus        50 KD~~~H~G-CiNAlqFS~N~~~L~SGGDD~~~~~W~~de~~~~k----------------------------------~~   94 (609)
T KOG4227|consen   50 KDVREHTG-CINALQFSHNDRFLASGGDDMHGRVWNVDELMVRK----------------------------------TP   94 (609)
T ss_pred             hhhhhhcc-ccceeeeccCCeEEeecCCcceeeeechHHHHhhc----------------------------------CC
Confidence            35789999 99999999999999999999999999998542221                                  22


Q ss_pred             Ccccccc-cccCCeEEEEEecCCCcEEEEEcCCCeEEEEEcCCCCcceEEEe--eccCCceeEEEeccCCCCeEEEEcCC
Q 021657           82 GPRGIYN-GHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPVIKVE--KAHDADLHCVDWNPLDDNLILTGSAD  158 (309)
Q Consensus        82 ~~~~~~~-~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~--~~~~~~v~~~~~~~~~~~~l~~~~~d  158 (309)
                      +++.... .|...|.|++|...+ ..+.+|..+++|.+.|+++.+  .+..+  ....+.|+.|..+| ..+.|++.+.+
T Consensus        95 KPI~~~~~~H~SNIF~L~F~~~N-~~~~SG~~~~~VI~HDiEt~q--si~V~~~~~~~~~VY~m~~~P-~DN~~~~~t~~  170 (609)
T KOG4227|consen   95 KPIGVMEHPHRSNIFSLEFDLEN-RFLYSGERWGTVIKHDIETKQ--SIYVANENNNRGDVYHMDQHP-TDNTLIVVTRA  170 (609)
T ss_pred             CCceeccCccccceEEEEEccCC-eeEecCCCcceeEeeecccce--eeeeecccCcccceeecccCC-CCceEEEEecC
Confidence            3344433 356899999998876 889999999999999999877  33332  22335899999999 78999999999


Q ss_pred             CcEEEEecCCCCCCCCCCceeeeccCCCCeeEEEEecCCCcEEEEecCCCcEEEEeCCccccc
Q 021657          159 NSVRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKK  221 (309)
Q Consensus       159 g~i~i~d~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~dg~i~iwd~~~~~~~  221 (309)
                      +.|.+||.+..+..  +.++. .........++.|+|..+.|+++.+..+-+-+||++....+
T Consensus       171 ~~V~~~D~Rd~~~~--~~~~~-~AN~~~~F~t~~F~P~~P~Li~~~~~~~G~~~~D~R~~~~~  230 (609)
T KOG4227|consen  171 KLVSFIDNRDRQNP--ISLVL-PANSGKNFYTAEFHPETPALILVNSETGGPNVFDRRMQARP  230 (609)
T ss_pred             ceEEEEeccCCCCC--Cceee-ecCCCccceeeeecCCCceeEEeccccCCCCceeeccccch
Confidence            99999999974311  22221 22234567889999999999999999999999999986544

>KOG4328 consensus WD40 protein [Function unknown]

Probab=99.90  E-value=1.6e-22  Score=155.36  Aligned_cols=206  Identities=16%  Similarity=0.237  Sum_probs=162.0

Q ss_pred             CCCCCcCcccccccccCCeEEEEEecCCC-cEEEEEcCCCeEEEEEcCCCC--cceEEEeeccCCceeEEEeccCCCCeE
Q 021657           76 ADGPSVGPRGIYNGHEDTVEDVTFCPSSA-QEFCSVGDDSCLILWDARVGT--SPVIKVEKAHDADLHCVDWNPLDDNLI  152 (309)
Q Consensus        76 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~~l~s~~~dg~i~iwd~~~~~--~~~~~~~~~~~~~v~~~~~~~~~~~~l  152 (309)
                      .++.........+-+.++|++++|+|... .++++|..-|.|-+||+.+.+  ...+..+..|..+|.+|.|+|.+...+
T Consensus       171 l~l~~~~~~~v~kv~~~Rit~l~fHPt~~~~lva~GdK~G~VG~Wn~~~~~~d~d~v~~f~~hs~~Vs~l~F~P~n~s~i  250 (498)
T KOG4328|consen  171 LDLDDYRILNVAKVTDRRITSLAFHPTENRKLVAVGDKGGQVGLWNFGTQEKDKDGVYLFTPHSGPVSGLKFSPANTSQI  250 (498)
T ss_pred             cccccceecceeEecccceEEEEecccCcceEEEEccCCCcEEEEecCCCCCccCceEEeccCCccccceEecCCChhhe
Confidence            34444555566677899999999999876 788999999999999996332  335667788999999999999888999


Q ss_pred             EEEcCCCcEEEEecCCCCCCCCCCceeeeccCCCCeeEEEEecCCCcEEEEecCCCcEEEEeCCcccccccCCCCCcCCC
Q 021657          153 LTGSADNSVRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYP  232 (309)
Q Consensus       153 ~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~  232 (309)
                      ++.+.||+|++-|+....    .+.+.........+.++.|+.+...++ .+..=|.+.+||++..+..+          
T Consensus       251 ~ssSyDGtiR~~D~~~~i----~e~v~s~~~d~~~fs~~d~~~e~~~vl-~~~~~G~f~~iD~R~~~s~~----------  315 (498)
T KOG4328|consen  251 YSSSYDGTIRLQDFEGNI----SEEVLSLDTDNIWFSSLDFSAESRSVL-FGDNVGNFNVIDLRTDGSEY----------  315 (498)
T ss_pred             eeeccCceeeeeeecchh----hHHHhhcCccceeeeeccccCCCccEE-EeecccceEEEEeecCCccc----------
Confidence            999999999999998743    344444444456678889998888665 66666799999999855533          


Q ss_pred             CceeeeecCCCcceeeEEEccCCCeEEEEecCCCCCCCCCCeEEEEEccccccCChhhHhHhhhcccceEEEeeeCC
Q 021657          233 AGLFFQHAGHRDKVVDFHWNASDPWTVVSVSDDCDSTGGGGTLQIWRMSDLIYRPQDEVLAELEKFKAHVISCTSKP  309 (309)
Q Consensus       233 ~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~s~d~~s~~~dg~v~vw~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~P  309 (309)
                          ..+.-|...|.+|+++|..+++++++|.|       ++++|||++.+..+++  ++-....|...|.++.|+|
T Consensus       316 ----~~~~lh~kKI~sv~~NP~~p~~laT~s~D-------~T~kIWD~R~l~~K~s--p~lst~~HrrsV~sAyFSP  379 (498)
T KOG4328|consen  316 ----ENLRLHKKKITSVALNPVCPWFLATASLD-------QTAKIWDLRQLRGKAS--PFLSTLPHRRSVNSAYFSP  379 (498)
T ss_pred             ----hhhhhhhcccceeecCCCCchheeecccC-------cceeeeehhhhcCCCC--cceecccccceeeeeEEcC
Confidence                34456788999999999999999966666       9999999997764443  2333446999999999998

>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]

Probab=99.90  E-value=3.8e-23  Score=165.38  Aligned_cols=123  Identities=17%  Similarity=0.417  Sum_probs=103.8

Q ss_pred             CceeEEEeccCCCCeEEEEcCCCcEEEEecCCCCC-CCCCCceeeeccCCCCeeEEEEecCCCcEEEEecCCCcEEEEeC
Q 021657          137 ADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTS-NGVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDY  215 (309)
Q Consensus       137 ~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~-~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~dg~i~iwd~  215 (309)
                      ..|+.+.|+|.+...|++++.||.|++|.+..... +....+-..+..|...|+++.|+|--..+|++++.|-+|++||+
T Consensus       628 t~vtDl~WdPFD~~rLAVa~ddg~i~lWr~~a~gl~e~~~tPe~~lt~h~eKI~slRfHPLAadvLa~asyd~Ti~lWDl  707 (1012)
T KOG1445|consen  628 TLVTDLHWDPFDDERLAVATDDGQINLWRLTANGLPENEMTPEKILTIHGEKITSLRFHPLAADVLAVASYDSTIELWDL  707 (1012)
T ss_pred             ceeeecccCCCChHHeeecccCceEEEEEeccCCCCcccCCcceeeecccceEEEEEecchhhhHhhhhhccceeeeeeh
Confidence            45778999999999999999999999999876432 22244556778899999999999977778999999999999999


Q ss_pred             CcccccccCCCCCcCCCCceeeeecCCCcceeeEEEccCCCeEEEEecCCCCCCCCCCeEEEEEccc
Q 021657          216 EKVGKKVEQGPRTTNYPAGLFFQHAGHRDKVVDFHWNASDPWTVVSVSDDCDSTGGGGTLQIWRMSD  282 (309)
Q Consensus       216 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~s~d~~s~~~dg~v~vw~~~~  282 (309)
                      ++               ......+.+|.+.|.+++|+|+|..++        |.+.||+|++|+-+.
T Consensus       708 ~~---------------~~~~~~l~gHtdqIf~~AWSpdGr~~A--------tVcKDg~~rVy~Prs  751 (1012)
T KOG1445|consen  708 AN---------------AKLYSRLVGHTDQIFGIAWSPDGRRIA--------TVCKDGTLRVYEPRS  751 (1012)
T ss_pred             hh---------------hhhhheeccCcCceeEEEECCCCccee--------eeecCceEEEeCCCC
Confidence            98               445567899999999999999988766        666779999999885

>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]

Probab=99.90  E-value=2.7e-22  Score=151.95  Aligned_cols=257  Identities=21%  Similarity=0.320  Sum_probs=180.8

Q ss_pred             CCCCcceEEEEECCCCC-EEEEecCCCcEEEEeCCccccccccCCccccccCCCCceeecCCCCCCCCcccCCCCCcCcc
Q 021657            6 GHQDNAEFALAMCPTEP-YVLSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPR   84 (309)
Q Consensus         6 ~H~~~~V~~~~~~~~~~-~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   84 (309)
                      -|...+|.++.|.++.. .|+||+.|..|++|.+.........                               .+.+.+
T Consensus        10 wH~~~pv~s~dfq~n~~~~laT~G~D~~iriW~v~r~~~~~~~-------------------------------~~V~y~   58 (434)
T KOG1009|consen   10 WHDHEPVYSVDFQKNSLNKLATAGGDKDIRIWKVNRSEPGGGD-------------------------------MKVEYL   58 (434)
T ss_pred             ecCCCceEEEEeccCcccceecccCccceeeeeeeecCCCCCc-------------------------------eeEEEe
Confidence            35556899999999766 9999999999999998753211100                               122345


Q ss_pred             cccccccCCeEEEEEecCCCcEEEEEcCCCeEEEEEcC--------C------CCcceEEEeeccCCceeEEEeccCCCC
Q 021657           85 GIYNGHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDAR--------V------GTSPVIKVEKAHDADLHCVDWNPLDDN  150 (309)
Q Consensus        85 ~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~--------~------~~~~~~~~~~~~~~~v~~~~~~~~~~~  150 (309)
                      ..+..|...|+++.|+|+| .+|++|+++|.|.+|-..        +      ......+.+.+|...|..++|+| +++
T Consensus        59 s~Ls~H~~aVN~vRf~p~g-elLASg~D~g~v~lWk~~~~~~~~~d~e~~~~ke~w~v~k~lr~h~~diydL~Ws~-d~~  136 (434)
T KOG1009|consen   59 SSLSRHTRAVNVVRFSPDG-ELLASGGDGGEVFLWKQGDVRIFDADTEADLNKEKWVVKKVLRGHRDDIYDLAWSP-DSN  136 (434)
T ss_pred             ecccCCcceeEEEEEcCCc-CeeeecCCCceEEEEEecCcCCccccchhhhCccceEEEEEecccccchhhhhccC-CCc
Confidence            6778899999999999999 899999999999999765        1      22345566778999999999999 999


Q ss_pred             eEEEEcCCCcEEEEecCCCCCCCCCCceeeeccCCCCeeEEEEecCCCcEEEEecCCCcEEEEeCCcccccccCC----C
Q 021657          151 LILTGSADNSVRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQG----P  226 (309)
Q Consensus       151 ~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~dg~i~iwd~~~~~~~~~~~----~  226 (309)
                      ++++++.|..+++||+..      +.....+..|...+..++|.|-+++ +++-+.|...+.+.+..........    +
T Consensus       137 ~l~s~s~dns~~l~Dv~~------G~l~~~~~dh~~yvqgvawDpl~qy-v~s~s~dr~~~~~~~~~~~~~~~~~~~~m~  209 (434)
T KOG1009|consen  137 FLVSGSVDNSVRLWDVHA------GQLLAILDDHEHYVQGVAWDPLNQY-VASKSSDRHPEGFSAKLKQVIKRHGLDIMP  209 (434)
T ss_pred             eeeeeeccceEEEEEecc------ceeEeeccccccccceeecchhhhh-hhhhccCcccceeeeeeeeeeeeeeeeEee
Confidence            999999999999999999      9999999999999999999999997 5688888877777765522111110    0


Q ss_pred             -CCcCCCCceeeeec---CCCcceeeEEEccCCCeEEEEec-CCCCCCCCC--CeEEEEEccccccCChhhHhHhhhccc
Q 021657          227 -RTTNYPAGLFFQHA---GHRDKVVDFHWNASDPWTVVSVS-DDCDSTGGG--GTLQIWRMSDLIYRPQDEVLAELEKFK  299 (309)
Q Consensus       227 -~~~~~~~~~~~~~~---~~~~~v~~~~~~~~~~~~~~s~s-~d~~s~~~d--g~v~vw~~~~~~~~~~~~~~~~~~~h~  299 (309)
                       ...+........+.   .-..-...++|+|+|..++.-++ .+  +|+.-  +..++|+-..     ..+++..+....
T Consensus       210 ~~~~~~~e~~s~rLfhDeTlksFFrRlsfTPdG~llvtPag~~~--~g~~~~~n~tYvfsrk~-----l~rP~~~lp~~~  282 (434)
T KOG1009|consen  210 AKAFNEREGKSTRLFHDETLKSFFRRLSFTPDGSLLVTPAGLFK--VGGGVFRNTSYVFSRKD-----LKRPAARLPSPK  282 (434)
T ss_pred             ecccCCCCcceeeeeecCchhhhhhhcccCCCCcEEEcccceee--eCCceeeceeEeecccc-----ccCceeecCCCC
Confidence             00000001111111   11223567899998876553221 11  22221  3445555443     455666777777


Q ss_pred             ceEEEeeeCC
Q 021657          300 AHVISCTSKP  309 (309)
Q Consensus       300 ~~v~~~~~~P  309 (309)
                      .++..+.|+|
T Consensus       283 k~~lavr~~p  292 (434)
T KOG1009|consen  283 KPALAVRFSP  292 (434)
T ss_pred             cceEEEEeee
Confidence            7888887776

>KOG2096 consensus WD40 repeat protein [General function prediction only]

Probab=99.89  E-value=7.3e-22  Score=145.46  Aligned_cols=173  Identities=20%  Similarity=0.376  Sum_probs=129.4

Q ss_pred             ccccccccCCeEEEEEecCCCcEEEEEcCCCeEEEEEcCCCCcc------------------------------------
Q 021657           84 RGIYNGHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSP------------------------------------  127 (309)
Q Consensus        84 ~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~------------------------------------  127 (309)
                      +..+++|.+.|++++|+.+| ..|++++.|+.|++|+++.....                                    
T Consensus        79 ~~~LKgH~~~vt~~~FsSdG-K~lat~~~Dr~Ir~w~~~DF~~~eHr~~R~nve~dhpT~V~FapDc~s~vv~~~~g~~l  157 (420)
T KOG2096|consen   79 VSVLKGHKKEVTDVAFSSDG-KKLATISGDRSIRLWDVRDFENKEHRCIRQNVEYDHPTRVVFAPDCKSVVVSVKRGNKL  157 (420)
T ss_pred             hhhhhccCCceeeeEEcCCC-ceeEEEeCCceEEEEecchhhhhhhhHhhccccCCCceEEEECCCcceEEEEEccCCEE
Confidence            35678999999999999999 88999999999999998643210                                    


Q ss_pred             eEE---------------------EeeccCCceeEEEeccCCCCeEEEEcCCCcEEEEecCCCCCCCCCCceeeeccCCC
Q 021657          128 VIK---------------------VEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGHSA  186 (309)
Q Consensus       128 ~~~---------------------~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~  186 (309)
                      .+.                     ....|...+..+-... ++.++++++.|..|.+|+++       ++.+..+.....
T Consensus       158 ~vyk~~K~~dG~~~~~~v~~D~~~f~~kh~v~~i~iGiA~-~~k~imsas~dt~i~lw~lk-------Gq~L~~idtnq~  229 (420)
T KOG2096|consen  158 CVYKLVKKTDGSGSHHFVHIDNLEFERKHQVDIINIGIAG-NAKYIMSASLDTKICLWDLK-------GQLLQSIDTNQS  229 (420)
T ss_pred             EEEEeeecccCCCCcccccccccccchhcccceEEEeecC-CceEEEEecCCCcEEEEecC-------Cceeeeeccccc
Confidence            000                     0011223334444444 67899999999999999998       678888887777


Q ss_pred             CeeEEEEecCCCcEEEEecCCCcEEEEeCCcccccccCCCCCcCCCCceeeeecCCCcceeeEEEccCCCeEEEEecCCC
Q 021657          187 AVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKVVDFHWNASDPWTVVSVSDDC  266 (309)
Q Consensus       187 ~v~~~~~~~~~~~l~~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~s~d~  266 (309)
                      .-+..+.+|+|++ +|+++.---|++|.+--.+.-.       -.....++.+.+|...|..++|+|+...+ +++|   
T Consensus       230 ~n~~aavSP~GRF-ia~~gFTpDVkVwE~~f~kdG~-------fqev~rvf~LkGH~saV~~~aFsn~S~r~-vtvS---  297 (420)
T KOG2096|consen  230 SNYDAAVSPDGRF-IAVSGFTPDVKVWEPIFTKDGT-------FQEVKRVFSLKGHQSAVLAAAFSNSSTRA-VTVS---  297 (420)
T ss_pred             cccceeeCCCCcE-EEEecCCCCceEEEEEeccCcc-------hhhhhhhheeccchhheeeeeeCCCccee-EEEe---
Confidence            7788899999997 5677777889999975422110       01134578899999999999999987764 4444   


Q ss_pred             CCCCCCCeEEEEEcc
Q 021657          267 DSTGGGGTLQIWRMS  281 (309)
Q Consensus       267 ~s~~~dg~v~vw~~~  281 (309)
                          .||++++||++
T Consensus       298 ----kDG~wriwdtd  308 (420)
T KOG2096|consen  298 ----KDGKWRIWDTD  308 (420)
T ss_pred             ----cCCcEEEeecc
Confidence                55999999987

>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]

Probab=99.89  E-value=1.5e-21  Score=155.98  Aligned_cols=219  Identities=18%  Similarity=0.303  Sum_probs=157.1

Q ss_pred             EEECCC---CCEEEEecCCCcEEEEeCCccccccccCCccccccCCCCceeecCCCCCCCCcccCCCCCcCccccccccc
Q 021657           15 LAMCPT---EPYVLSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHE   91 (309)
Q Consensus        15 ~~~~~~---~~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   91 (309)
                      ..|++.   ...|+.+.+||.|.++|........                                  ....+.....|.
T Consensus        55 ~sFs~~~n~eHiLavadE~G~i~l~dt~~~~fr~----------------------------------ee~~lk~~~aH~  100 (720)
T KOG0321|consen   55 DSFSAAPNKEHILAVADEDGGIILFDTKSIVFRL----------------------------------EERQLKKPLAHK  100 (720)
T ss_pred             ccccCCCCccceEEEecCCCceeeecchhhhcch----------------------------------hhhhhccccccc
Confidence            566653   3468899999999999987532110                                  112245566799


Q ss_pred             CCeEEEEEecCCCcEEEEEcCCCeEEEEEcCCCCcceEEEeeccCCceeEEEeccCCCCeEEEEcCCCcEEEEecCCCCC
Q 021657           92 DTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTS  171 (309)
Q Consensus        92 ~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~  171 (309)
                      ..|.++.|-| ++..|++++.|.+++.||+.+.+..-...+.+|...|.+++|.|.+...|++|+.||.|.|||++-...
T Consensus       101 nAifDl~wap-ge~~lVsasGDsT~r~Wdvk~s~l~G~~~~~GH~~SvkS~cf~~~n~~vF~tGgRDg~illWD~R~n~~  179 (720)
T KOG0321|consen  101 NAIFDLKWAP-GESLLVSASGDSTIRPWDVKTSRLVGGRLNLGHTGSVKSECFMPTNPAVFCTGGRDGEILLWDCRCNGV  179 (720)
T ss_pred             ceeEeeccCC-CceeEEEccCCceeeeeeeccceeecceeecccccccchhhhccCCCcceeeccCCCcEEEEEEeccch
Confidence            9999999999 668999999999999999998884444458899999999999998899999999999999999985320


Q ss_pred             --------------CC-------CCCceeeeccCCCCeeE---EEEecCCCcEEEEecC-CCcEEEEeCCcccccccCCC
Q 021657          172 --------------NG-------VGSPINKFEGHSAAVLC---VQWSPDKSSVFGSSAE-DGLLNIWDYEKVGKKVEQGP  226 (309)
Q Consensus       172 --------------~~-------~~~~~~~~~~~~~~v~~---~~~~~~~~~l~~~~~~-dg~i~iwd~~~~~~~~~~~~  226 (309)
                                    ..       ..+.+.....+...|.+   +.+..|... ||+++. |+.|+|||+++........+
T Consensus       180 d~~e~~~~~~~~~~n~~ptpskp~~kr~~k~kA~s~ti~ssvTvv~fkDe~t-laSaga~D~~iKVWDLRk~~~~~r~ep  258 (720)
T KOG0321|consen  180 DALEEFDNRIYGRHNTAPTPSKPLKKRIRKWKAASNTIFSSVTVVLFKDEST-LASAGAADSTIKVWDLRKNYTAYRQEP  258 (720)
T ss_pred             hhHHHHhhhhhccccCCCCCCchhhccccccccccCceeeeeEEEEEeccce-eeeccCCCcceEEEeecccccccccCC
Confidence                          00       01122222334444544   445556664 567766 99999999998655544333


Q ss_pred             CCcCCCCceeeeecCC---CcceeeEEEccCCCeEEEEecCCCCCCCCCCeEEEEEccccc
Q 021657          227 RTTNYPAGLFFQHAGH---RDKVVDFHWNASDPWTVVSVSDDCDSTGGGGTLQIWRMSDLI  284 (309)
Q Consensus       227 ~~~~~~~~~~~~~~~~---~~~v~~~~~~~~~~~~~~s~s~d~~s~~~dg~v~vw~~~~~~  284 (309)
                      ...       ..+..|   ...+.++.....|.+|+|+|.+        +.|++|++....
T Consensus       259 ~~~-------~~~~t~skrs~G~~nL~lDssGt~L~AsCtD--------~sIy~ynm~s~s  304 (720)
T KOG0321|consen  259 RGS-------DKYPTHSKRSVGQVNLILDSSGTYLFASCTD--------NSIYFYNMRSLS  304 (720)
T ss_pred             Ccc-------cCccCcccceeeeEEEEecCCCCeEEEEecC--------CcEEEEeccccC
Confidence            222       112222   3467888888889999987763        799999998653

>KOG1539 consensus WD repeat protein [General function prediction only]

Probab=99.89  E-value=1.4e-21  Score=160.60  Aligned_cols=200  Identities=16%  Similarity=0.268  Sum_probs=164.9

Q ss_pred             ceEEEEECCCCCEEEEecCCCcEEEEeCCccccccccCCccccccCCCCceeecCCCCCCCCcccCCCCCcCcccccccc
Q 021657           11 AEFALAMCPTEPYVLSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGH   90 (309)
Q Consensus        11 ~V~~~~~~~~~~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   90 (309)
                      .+++++.++.|++.+.|+..|.|-+|++++++....+.                                     .-..|
T Consensus       450 ~~~av~vs~CGNF~~IG~S~G~Id~fNmQSGi~r~sf~-------------------------------------~~~ah  492 (910)
T KOG1539|consen  450 NATAVCVSFCGNFVFIGYSKGTIDRFNMQSGIHRKSFG-------------------------------------DSPAH  492 (910)
T ss_pred             ceEEEEEeccCceEEEeccCCeEEEEEcccCeeecccc-------------------------------------cCccc
Confidence            68999999999999999999999999999775443331                                     11469


Q ss_pred             cCCeEEEEEecCCCcEEEEEcCCCeEEEEEcCCCCcceEEEeeccCCceeEEEeccCCCCeEEEEcCCCcEEEEecCCCC
Q 021657           91 EDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLT  170 (309)
Q Consensus        91 ~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~  170 (309)
                      .++|++++....+ +.+++++.+|.++.||.....  ....+. -..++.++.++. ....++++..|-.|+++|..+  
T Consensus       493 ~~~V~gla~D~~n-~~~vsa~~~Gilkfw~f~~k~--l~~~l~-l~~~~~~iv~hr-~s~l~a~~~ddf~I~vvD~~t--  565 (910)
T KOG1539|consen  493 KGEVTGLAVDGTN-RLLVSAGADGILKFWDFKKKV--LKKSLR-LGSSITGIVYHR-VSDLLAIALDDFSIRVVDVVT--  565 (910)
T ss_pred             cCceeEEEecCCC-ceEEEccCcceEEEEecCCcc--eeeeec-cCCCcceeeeee-hhhhhhhhcCceeEEEEEchh--
Confidence            9999999998887 889999999999999997665  344432 356788888888 888999999999999999999  


Q ss_pred             CCCCCCceeeeccCCCCeeEEEEecCCCcEEEEecCCCcEEEEeCCcccccccCCCCCcCCCCceeeeecCCCcceeeEE
Q 021657          171 SNGVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKVVDFH  250 (309)
Q Consensus       171 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~  250 (309)
                          .+.++.|.+|...|++++|||||+++ ++++.|++|++||+.+               ..++ ..-.-..+++++.
T Consensus       566 ----~kvvR~f~gh~nritd~~FS~DgrWl-isasmD~tIr~wDlpt---------------~~lI-D~~~vd~~~~sls  624 (910)
T KOG1539|consen  566 ----RKVVREFWGHGNRITDMTFSPDGRWL-ISASMDSTIRTWDLPT---------------GTLI-DGLLVDSPCTSLS  624 (910)
T ss_pred             ----hhhhHHhhccccceeeeEeCCCCcEE-EEeecCCcEEEEeccC---------------ccee-eeEecCCcceeeE
Confidence                88999999999999999999999985 5999999999999998               2222 2223456889999


Q ss_pred             EccCCCeEEEEecCCCCCCCCCCeEEEEEccc
Q 021657          251 WNASDPWTVVSVSDDCDSTGGGGTLQIWRMSD  282 (309)
Q Consensus       251 ~~~~~~~~~~s~s~d~~s~~~dg~v~vw~~~~  282 (309)
                      |+|++++|+.+..+.       .-|++|--..
T Consensus       625 ~SPngD~LAT~Hvd~-------~gIylWsNks  649 (910)
T KOG1539|consen  625 FSPNGDFLATVHVDQ-------NGIYLWSNKS  649 (910)
T ss_pred             ECCCCCEEEEEEecC-------ceEEEEEchh
Confidence            999999877544443       7899998653

>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein

Probab=99.89  E-value=1e-20  Score=149.96  Aligned_cols=254  Identities=12%  Similarity=0.108  Sum_probs=162.5

Q ss_pred             CCEEEEecCCCcEEEEeCCccccccccCCc---cccccCCCCceeecCCCCCCCCcccCCCCCcCcccccccccCCeEEE
Q 021657           21 EPYVLSGGKDKSVVLWSIQDHITSSATDPA---TAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDV   97 (309)
Q Consensus        21 ~~~l~t~~~dg~i~vwd~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~   97 (309)
                      +..+++++.|+.|++||+.++.........   ............ +.....++.+.+|+..+.+....+..+.. +..+
T Consensus         1 ~~~~~s~~~d~~v~~~d~~t~~~~~~~~~~~~~~~l~~~~dg~~l-~~~~~~~~~v~~~d~~~~~~~~~~~~~~~-~~~~   78 (300)
T TIGR03866         1 EKAYVSNEKDNTISVIDTATLEVTRTFPVGQRPRGITLSKDGKLL-YVCASDSDTIQVIDLATGEVIGTLPSGPD-PELF   78 (300)
T ss_pred             CcEEEEecCCCEEEEEECCCCceEEEEECCCCCCceEECCCCCEE-EEEECCCCeEEEEECCCCcEEEeccCCCC-ccEE
Confidence            357889999999999999876432222211   111111222211 12233467788899888777666655443 5678


Q ss_pred             EEecCCCcEEEEEcCCCeEEEEEcCCCCcceEEEeeccCCceeEEEeccCCCCeEEEEcCCC-cEEEEecCCCCCCCCCC
Q 021657           98 TFCPSSAQEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADN-SVRMFDRRNLTSNGVGS  176 (309)
Q Consensus        98 ~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg-~i~i~d~~~~~~~~~~~  176 (309)
                      .|+|++..++++++.++.|++||+.+.+  ....+. +...+.+++|+| ++.+++++..++ .+.+||.++      ++
T Consensus        79 ~~~~~g~~l~~~~~~~~~l~~~d~~~~~--~~~~~~-~~~~~~~~~~~~-dg~~l~~~~~~~~~~~~~d~~~------~~  148 (300)
T TIGR03866        79 ALHPNGKILYIANEDDNLVTVIDIETRK--VLAEIP-VGVEPEGMAVSP-DGKIVVNTSETTNMAHFIDTKT------YE  148 (300)
T ss_pred             EECCCCCEEEEEcCCCCeEEEEECCCCe--EEeEee-CCCCcceEEECC-CCCEEEEEecCCCeEEEEeCCC------Ce
Confidence            9999985455666778999999998765  444443 234568899999 999999888765 567789887      55


Q ss_pred             ceeeeccCCCCeeEEEEecCCCcEEEEecCCCcEEEEeCCcccccccCCCCCcCCCCceeeeecCCCcceeeEEEccCCC
Q 021657          177 PINKFEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKVVDFHWNASDP  256 (309)
Q Consensus       177 ~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~  256 (309)
                      .+..... ...+..++|+|+++++++++..++.|++||++.... ........       ............++|+|++.
T Consensus       149 ~~~~~~~-~~~~~~~~~s~dg~~l~~~~~~~~~v~i~d~~~~~~-~~~~~~~~-------~~~~~~~~~~~~i~~s~dg~  219 (300)
T TIGR03866       149 IVDNVLV-DQRPRFAEFTADGKELWVSSEIGGTVSVIDVATRKV-IKKITFEI-------PGVHPEAVQPVGIKLTKDGK  219 (300)
T ss_pred             EEEEEEc-CCCccEEEECCCCCEEEEEcCCCCEEEEEEcCccee-eeeeeecc-------cccccccCCccceEECCCCC
Confidence            5544432 334578999999998766766799999999987321 11000000       00000011235688999999


Q ss_pred             eEEEEecCCCCCCCCCCeEEEEEccccccCChhhHhHhhhcccceEEEeeeCC
Q 021657          257 WTVVSVSDDCDSTGGGGTLQIWRMSDLIYRPQDEVLAELEKFKAHVISCTSKP  309 (309)
Q Consensus       257 ~~~~s~s~d~~s~~~dg~v~vw~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~P  309 (309)
                      .++++.+.+       +.+.+||+.      +.+.+..+ .+...+.+++|+|
T Consensus       220 ~~~~~~~~~-------~~i~v~d~~------~~~~~~~~-~~~~~~~~~~~~~  258 (300)
T TIGR03866       220 TAFVALGPA-------NRVAVVDAK------TYEVLDYL-LVGQRVWQLAFTP  258 (300)
T ss_pred             EEEEEcCCC-------CeEEEEECC------CCcEEEEE-EeCCCcceEEECC
Confidence            877644333       689999998      44444333 2445788888886

Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.

>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]

Probab=99.89  E-value=1e-20  Score=138.69  Aligned_cols=233  Identities=16%  Similarity=0.189  Sum_probs=167.6

Q ss_pred             CCCCcceEEEEECCCCCEEEEecCCCcEEEEeCCccccccccC-CccccccCCCCceeecCCCCCCCCcccCCCCCcCcc
Q 021657            6 GHQDNAEFALAMCPTEPYVLSGGKDKSVVLWSIQDHITSSATD-PATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPR   84 (309)
Q Consensus         6 ~H~~~~V~~~~~~~~~~~l~t~~~dg~i~vwd~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   84 (309)
                      -|.. ++.+++|.+ ...+++|+.||.|+.+|+.++....... ...............+..+.-+..+++||.+.....
T Consensus        52 ~~~~-plL~c~F~d-~~~~~~G~~dg~vr~~Dln~~~~~~igth~~~i~ci~~~~~~~~vIsgsWD~~ik~wD~R~~~~~  129 (323)
T KOG1036|consen   52 KHGA-PLLDCAFAD-ESTIVTGGLDGQVRRYDLNTGNEDQIGTHDEGIRCIEYSYEVGCVISGSWDKTIKFWDPRNKVVV  129 (323)
T ss_pred             ecCC-ceeeeeccC-CceEEEeccCceEEEEEecCCcceeeccCCCceEEEEeeccCCeEEEcccCccEEEEeccccccc
Confidence            3676 899999987 4578999999999999998774332221 111122222233445556777899999999975555


Q ss_pred             cccccccCCeEEEEEecCCCcEEEEEcCCCeEEEEEcCCCCcceEEEeeccCCceeEEEeccCCCCeEEEEcCCCcEEEE
Q 021657           85 GIYNGHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMF  164 (309)
Q Consensus        85 ~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~  164 (309)
                      ..+.. ...|.++....   +.|+.|+.|..+.+||++....+.......-+-.++|+++-| ++.-+++++-||.|.+=
T Consensus       130 ~~~d~-~kkVy~~~v~g---~~LvVg~~~r~v~iyDLRn~~~~~q~reS~lkyqtR~v~~~p-n~eGy~~sSieGRVavE  204 (323)
T KOG1036|consen  130 GTFDQ-GKKVYCMDVSG---NRLVVGTSDRKVLIYDLRNLDEPFQRRESSLKYQTRCVALVP-NGEGYVVSSIEGRVAVE  204 (323)
T ss_pred             ccccc-CceEEEEeccC---CEEEEeecCceEEEEEcccccchhhhccccceeEEEEEEEec-CCCceEEEeecceEEEE
Confidence            55543 34788887643   568899999999999999887555444445566899999999 89999999999998875


Q ss_pred             ecCCCCCCCCCCceeeeccCC---------CCeeEEEEecCCCcEEEEecCCCcEEEEeCCcccccccCCCCCcCCCCce
Q 021657          165 DRRNLTSNGVGSPINKFEGHS---------AAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGL  235 (309)
Q Consensus       165 d~~~~~~~~~~~~~~~~~~~~---------~~v~~~~~~~~~~~l~~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~  235 (309)
                      .+...+..  .+....|+.|.         -+|++|+|+|-... ||+|+.||.|.+||+.+.               +.
T Consensus       205 ~~d~s~~~--~skkyaFkCHr~~~~~~~~~yPVNai~Fhp~~~t-faTgGsDG~V~~Wd~~~r---------------Kr  266 (323)
T KOG1036|consen  205 YFDDSEEA--QSKKYAFKCHRLSEKDTEIIYPVNAIAFHPIHGT-FATGGSDGIVNIWDLFNR---------------KR  266 (323)
T ss_pred             ccCCchHH--hhhceeEEeeecccCCceEEEEeceeEeccccce-EEecCCCceEEEccCcch---------------hh
Confidence            55542110  23344555553         36999999998764 789999999999999872               23


Q ss_pred             eeeecCCCcceeeEEEccCCCeEEEEec
Q 021657          236 FFQHAGHRDKVVDFHWNASDPWTVVSVS  263 (309)
Q Consensus       236 ~~~~~~~~~~v~~~~~~~~~~~~~~s~s  263 (309)
                      +..+......|.+++|+.+|..|+++.|
T Consensus       267 l~q~~~~~~SI~slsfs~dG~~LAia~s  294 (323)
T KOG1036|consen  267 LKQLAKYETSISSLSFSMDGSLLAIASS  294 (323)
T ss_pred             hhhccCCCCceEEEEeccCCCeEEEEec
Confidence            3445555667999999999987776655

>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]

Probab=99.88  E-value=5.8e-21  Score=148.63  Aligned_cols=191  Identities=17%  Similarity=0.317  Sum_probs=158.0

Q ss_pred             cccCCCCCcceEEEEECCCCCEEEEecCCCcEEEEeCCccccccccCCccccccCCCCceeecCCCCCCCCcccCCCCCc
Q 021657            2 EILTGHQDNAEFALAMCPTEPYVLSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSV   81 (309)
Q Consensus         2 ~~l~~H~~~~V~~~~~~~~~~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (309)
                      +.|++|++ .|+++.++-...+||+++..|.|.|..+.++.....+.                                 
T Consensus       115 r~lkdh~s-tvt~v~YN~~DeyiAsvs~gGdiiih~~~t~~~tt~f~---------------------------------  160 (673)
T KOG4378|consen  115 RFLKDHQS-TVTYVDYNNTDEYIASVSDGGDIIIHGTKTKQKTTTFT---------------------------------  160 (673)
T ss_pred             hhccCCcc-eeEEEEecCCcceeEEeccCCcEEEEecccCcccccee---------------------------------
Confidence            57899998 89999999999999999999999999998643322211                                 


Q ss_pred             CcccccccccCCeEEEEEecCCCcEEEEEcCCCeEEEEEcCCCCcceEEEeeccCCceeEEEeccCCCCeEEEEcCCCcE
Q 021657           82 GPRGIYNGHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSV  161 (309)
Q Consensus        82 ~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i  161 (309)
                            .+....|.-+.|+|..+.+|.+++.+|.|.+||+. +..+.......|..+...++|+|.+..+|++.+.|..|
T Consensus       161 ------~~sgqsvRll~ys~skr~lL~~asd~G~VtlwDv~-g~sp~~~~~~~HsAP~~gicfspsne~l~vsVG~Dkki  233 (673)
T KOG4378|consen  161 ------IDSGQSVRLLRYSPSKRFLLSIASDKGAVTLWDVQ-GMSPIFHASEAHSAPCRGICFSPSNEALLVSVGYDKKI  233 (673)
T ss_pred             ------cCCCCeEEEeecccccceeeEeeccCCeEEEEecc-CCCcccchhhhccCCcCcceecCCccceEEEecccceE
Confidence                  11234567899999988889999999999999996 44456777789999999999999777899999999999


Q ss_pred             EEEecCCCCCCCCCCceeeeccCCCCeeEEEEecCCCcEEEEecCCCcEEEEeCCcccccccCCCCCcCCCCceeeeecC
Q 021657          162 RMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAG  241 (309)
Q Consensus       162 ~i~d~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~  241 (309)
                      .+||.+.      .+....+. -..+...++|.++|.+ |++|...|.|..||++...              .++.....
T Consensus       234 ~~yD~~s------~~s~~~l~-y~~Plstvaf~~~G~~-L~aG~s~G~~i~YD~R~~k--------------~Pv~v~sa  291 (673)
T KOG4378|consen  234 NIYDIRS------QASTDRLT-YSHPLSTVAFSECGTY-LCAGNSKGELIAYDMRSTK--------------APVAVRSA  291 (673)
T ss_pred             EEeeccc------ccccceee-ecCCcceeeecCCceE-EEeecCCceEEEEecccCC--------------CCceEeee
Confidence            9999997      55555554 3568899999999996 6799999999999999843              35667788


Q ss_pred             CCcceeeEEEccCC
Q 021657          242 HRDKVVDFHWNASD  255 (309)
Q Consensus       242 ~~~~v~~~~~~~~~  255 (309)
                      |...|++++|-|..
T Consensus       292 h~~sVt~vafq~s~  305 (673)
T KOG4378|consen  292 HDASVTRVAFQPSP  305 (673)
T ss_pred             cccceeEEEeeecc
Confidence            99999999998843

>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]

Probab=99.88  E-value=3.8e-21  Score=155.03  Aligned_cols=223  Identities=23%  Similarity=0.375  Sum_probs=166.3

Q ss_pred             cccCCCCCcceEEEEECCCCCEEEEecCCC-----cEEEEeCCccccccccCCccccccCCCCceeecCCCCCCCCcccC
Q 021657            2 EILTGHQDNAEFALAMCPTEPYVLSGGKDK-----SVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAA   76 (309)
Q Consensus         2 ~~l~~H~~~~V~~~~~~~~~~~l~t~~~dg-----~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   76 (309)
                      +.|-||.- .|++++.+|+|+++||+....     .|++|+..                                     
T Consensus       519 ~KLYGHGy-Ev~~l~~s~~gnliASaCKS~~~ehAvI~lw~t~-------------------------------------  560 (764)
T KOG1063|consen  519 HKLYGHGY-EVYALAISPTGNLIASACKSSLKEHAVIRLWNTA-------------------------------------  560 (764)
T ss_pred             HHhccCce-eEEEEEecCCCCEEeehhhhCCccceEEEEEecc-------------------------------------
Confidence            56789998 899999999999999998754     47888876                                     


Q ss_pred             CCCCcCcccccccccCCeEEEEEecCCCcEEEEEcCCCeEEEEEcCCCCcc--eEEEeeccCCceeEEEeccCCCCeEEE
Q 021657           77 DGPSVGPRGIYNGHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSP--VIKVEKAHDADLHCVDWNPLDDNLILT  154 (309)
Q Consensus        77 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~--~~~~~~~~~~~v~~~~~~~~~~~~l~~  154 (309)
                         +....+.+.+|.-.|+.++|+|+| ++|++.+.|.++.+|........  .....+.|..-|....|+| ++.+|++
T Consensus       561 ---~W~~~~~L~~HsLTVT~l~FSpdg-~~LLsvsRDRt~sl~~~~~~~~~e~~fa~~k~HtRIIWdcsW~p-de~~FaT  635 (764)
T KOG1063|consen  561 ---NWLQVQELEGHSLTVTRLAFSPDG-RYLLSVSRDRTVSLYEVQEDIKDEFRFACLKAHTRIIWDCSWSP-DEKYFAT  635 (764)
T ss_pred             ---chhhhheecccceEEEEEEECCCC-cEEEEeecCceEEeeeeecccchhhhhccccccceEEEEcccCc-ccceeEE
Confidence               344456788999999999999999 89999999999999997543321  1223678999999999999 9999999


Q ss_pred             EcCCCcEEEEecCCCCCCCCCCceee--eccCCCCeeEEEEecC----CCcEEEEecCCCcEEEEeCCcccccccCCCCC
Q 021657          155 GSADNSVRMFDRRNLTSNGVGSPINK--FEGHSAAVLCVQWSPD----KSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRT  228 (309)
Q Consensus       155 ~~~dg~i~i~d~~~~~~~~~~~~~~~--~~~~~~~v~~~~~~~~----~~~l~~~~~~dg~i~iwd~~~~~~~~~~~~~~  228 (309)
                      +++|.+|.+|......    .+.+..  ...+...|+++++.|-    ...+++.|-+.|.|.+|......+........
T Consensus       636 aSRDK~VkVW~~~~~~----d~~i~~~a~~~~~~aVTAv~~~~~~~~e~~~~vavGle~GeI~l~~~~~~~~~~~~~~~~  711 (764)
T KOG1063|consen  636 ASRDKKVKVWEEPDLR----DKYISRFACLKFSLAVTAVAYLPVDHNEKGDVVAVGLEKGEIVLWRRKREHRQVTVGTFN  711 (764)
T ss_pred             ecCCceEEEEeccCch----hhhhhhhchhccCCceeeEEeeccccccccceEEEEecccEEEEEecccccccccceeee
Confidence            9999999999988731    133333  2346788999998763    33478999999999999977433222111111


Q ss_pred             cCCCCceeeeecCCCcceeeEEEccC--------CC-eEEEEecCCCCCCCCCCeEEEEEcc
Q 021657          229 TNYPAGLFFQHAGHRDKVVDFHWNAS--------DP-WTVVSVSDDCDSTGGGGTLQIWRMS  281 (309)
Q Consensus       229 ~~~~~~~~~~~~~~~~~v~~~~~~~~--------~~-~~~~s~s~d~~s~~~dg~v~vw~~~  281 (309)
                         .........+|...|+.+.|.|.        .. +-+++|       +.|..++++++.
T Consensus       712 ---~~~~l~~~~~~~~aV~rl~w~p~~~~~~~~~~~~l~la~~-------g~D~~vri~nv~  763 (764)
T KOG1063|consen  712 ---LDTRLCATIGPDSAVNRLLWRPTCSDDWVEDKEWLNLAVG-------GDDESVRIFNVD  763 (764)
T ss_pred             ---eccccccccChHHhhheeEeccccccccccccceeEEeee-------cccceeEEeecc
Confidence               01122344567889999999975        22 335544       445999999875

>KOG1188 consensus WD40 repeat protein [General function prediction only]

Probab=99.88  E-value=2.3e-21  Score=143.93  Aligned_cols=176  Identities=19%  Similarity=0.343  Sum_probs=132.0

Q ss_pred             CcccCCCCCcceEEEEECC--CCCEEEEecCCCcEEEEeCCccccccccCCccccccCCCCceeecCCCCCCCCcccCCC
Q 021657            1 MEILTGHQDNAEFALAMCP--TEPYVLSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADG   78 (309)
Q Consensus         1 l~~l~~H~~~~V~~~~~~~--~~~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   78 (309)
                      ++.+++|.. .+..+.|..  ....+.+|+.||+||+||++.....                                  
T Consensus        63 l~~fk~~~~-~~N~vrf~~~ds~h~v~s~ssDG~Vr~wD~Rs~~e~----------------------------------  107 (376)
T KOG1188|consen   63 LEEFKGPPA-TTNGVRFISCDSPHGVISCSSDGTVRLWDIRSQAES----------------------------------  107 (376)
T ss_pred             hheecCCCC-cccceEEecCCCCCeeEEeccCCeEEEEEeecchhh----------------------------------
Confidence            356788888 889999977  3567889999999999999853211                                  


Q ss_pred             CCcCccccccccc-CCeEEEEEecCCCcEEEEEc----CCCeEEEEEcCCCCcceEEEeeccCCceeEEEeccCCCCeEE
Q 021657           79 PSVGPRGIYNGHE-DTVEDVTFCPSSAQEFCSVG----DDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLIL  153 (309)
Q Consensus        79 ~~~~~~~~~~~~~-~~v~~~~~~~~~~~~l~s~~----~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~  153 (309)
                          .......+. .+..+++.+..+ +++++|.    .+-.|.+||++..+++.......|.+.|++++|+|.+.++|+
T Consensus       108 ----a~~~~~~~~~~~f~~ld~nck~-~ii~~GtE~~~s~A~v~lwDvR~~qq~l~~~~eSH~DDVT~lrFHP~~pnlLl  182 (376)
T KOG1188|consen  108 ----ARISWTQQSGTPFICLDLNCKK-NIIACGTELTRSDASVVLWDVRSEQQLLRQLNESHNDDVTQLRFHPSDPNLLL  182 (376)
T ss_pred             ----hheeccCCCCCcceEeeccCcC-CeEEeccccccCceEEEEEEeccccchhhhhhhhccCcceeEEecCCCCCeEE
Confidence                122233343 455666665555 6677765    467899999998886666777889999999999999999999


Q ss_pred             EEcCCCcEEEEecCCCCCCCCCCceeeeccCCCCeeEEEEecCCCcEEEEecCCCcEEEEeCCccc
Q 021657          154 TGSADNSVRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVG  219 (309)
Q Consensus       154 ~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~dg~i~iwd~~~~~  219 (309)
                      +|+.||-|.+||+.....   ...+...-.+...|.++.|..++-.-+.+-+......+|+++...
T Consensus       183 SGSvDGLvnlfD~~~d~E---eDaL~~viN~~sSI~~igw~~~~ykrI~clTH~Etf~~~ele~~~  245 (376)
T KOG1188|consen  183 SGSVDGLVNLFDTKKDNE---EDALLHVINHGSSIHLIGWLSKKYKRIMCLTHMETFAIYELEDGS  245 (376)
T ss_pred             eecccceEEeeecCCCcc---hhhHHHhhcccceeeeeeeecCCcceEEEEEccCceeEEEccCCC
Confidence            999999999999987533   223333334677899999998882224477788999999998744

>KOG1273 consensus WD40 repeat protein [General function prediction only]

Probab=99.88  E-value=6.8e-21  Score=140.20  Aligned_cols=251  Identities=14%  Similarity=0.232  Sum_probs=163.2

Q ss_pred             cccCCCCCcceEEEEECCCCCEEEEecCCCcEEEEeCCccccccccCCccc---cccCCC--CceeecCCCCCCCCcccC
Q 021657            2 EILTGHQDNAEFALAMCPTEPYVLSGGKDKSVVLWSIQDHITSSATDPATA---KSAGSS--GSIIKQSPKPGDGNDKAA   76 (309)
Q Consensus         2 ~~l~~H~~~~V~~~~~~~~~~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~---~~~~~~--~~~~~~~~~~~~~~~~~~   76 (309)
                      ++|.+|.. +|++++||+||+.|+|+|.|..|.+||+..+...........   ......  ........... ..+...
T Consensus        59 r~lsaH~~-pi~sl~WS~dgr~LltsS~D~si~lwDl~~gs~l~rirf~spv~~~q~hp~k~n~~va~~~~~s-p~vi~~  136 (405)
T KOG1273|consen   59 RMLSAHVR-PITSLCWSRDGRKLLTSSRDWSIKLWDLLKGSPLKRIRFDSPVWGAQWHPRKRNKCVATIMEES-PVVIDF  136 (405)
T ss_pred             hhhhcccc-ceeEEEecCCCCEeeeecCCceeEEEeccCCCceeEEEccCccceeeeccccCCeEEEEEecCC-cEEEEe
Confidence            57889999 999999999999999999999999999998743332221111   111111  11111110000 111101


Q ss_pred             CCCCcCccccc-cc-ccCCeEEEEEecCCCcEEEEEcCCCeEEEEEcCCCCcceEEEeeccC-CceeEEEeccCCCCeEE
Q 021657           77 DGPSVGPRGIY-NG-HEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPVIKVEKAHD-ADLHCVDWNPLDDNLIL  153 (309)
Q Consensus        77 ~~~~~~~~~~~-~~-~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~-~~v~~~~~~~~~~~~l~  153 (309)
                      .......+..- .+ -+..-.+..|.+.| +++++|...|.+.++|..+.+  ++..++-.. ..|..+.++. .+..|+
T Consensus       137 s~~~h~~Lp~d~d~dln~sas~~~fdr~g-~yIitGtsKGkllv~~a~t~e--~vas~rits~~~IK~I~~s~-~g~~li  212 (405)
T KOG1273|consen  137 SDPKHSVLPKDDDGDLNSSASHGVFDRRG-KYIITGTSKGKLLVYDAETLE--CVASFRITSVQAIKQIIVSR-KGRFLI  212 (405)
T ss_pred             cCCceeeccCCCccccccccccccccCCC-CEEEEecCcceEEEEecchhe--eeeeeeechheeeeEEEEec-cCcEEE
Confidence            00000000000 00 01111223577877 899999999999999999887  666665555 6889999998 999999


Q ss_pred             EEcCCCcEEEEecCCCCCCCC---CCceeeecc--CCCCeeEEEEecCCCcEEEEecCCCcEEEEeCCcccccccCCCCC
Q 021657          154 TGSADNSVRMFDRRNLTSNGV---GSPINKFEG--HSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRT  228 (309)
Q Consensus       154 ~~~~dg~i~i~d~~~~~~~~~---~~~~~~~~~--~~~~v~~~~~~~~~~~l~~~~~~dg~i~iwd~~~~~~~~~~~~~~  228 (309)
                      .-+.|+.||.|+++.....+.   .++.++++.  .+..-.+++|+.+|.|++|+...-..++||.-..           
T Consensus       213 iNtsDRvIR~ye~~di~~~~r~~e~e~~~K~qDvVNk~~Wk~ccfs~dgeYv~a~s~~aHaLYIWE~~~-----------  281 (405)
T KOG1273|consen  213 INTSDRVIRTYEISDIDDEGRDGEVEPEHKLQDVVNKLQWKKCCFSGDGEYVCAGSARAHALYIWEKSI-----------  281 (405)
T ss_pred             EecCCceEEEEehhhhcccCccCCcChhHHHHHHHhhhhhhheeecCCccEEEeccccceeEEEEecCC-----------
Confidence            999999999999874221111   122223321  2344567899999999887777778899999877           


Q ss_pred             cCCCCceeeeecCCC-cceeeEEEccCCCeEEEEecCCCCCCCCCCeEEEEEccc
Q 021657          229 TNYPAGLFFQHAGHR-DKVVDFHWNASDPWTVVSVSDDCDSTGGGGTLQIWRMSD  282 (309)
Q Consensus       229 ~~~~~~~~~~~~~~~-~~v~~~~~~~~~~~~~~s~s~d~~s~~~dg~v~vw~~~~  282 (309)
                          +.++..+.|.. ....++.|+|-.+.++ +..        .|.+++|....
T Consensus       282 ----GsLVKILhG~kgE~l~DV~whp~rp~i~-si~--------sg~v~iw~~~~  323 (405)
T KOG1273|consen  282 ----GSLVKILHGTKGEELLDVNWHPVRPIIA-SIA--------SGVVYIWAVVQ  323 (405)
T ss_pred             ----cceeeeecCCchhheeecccccceeeee-ecc--------CCceEEEEeec
Confidence                55666777766 5788999999777544 332        28999999764

>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]

Probab=99.88  E-value=6.6e-23  Score=168.45  Aligned_cols=227  Identities=20%  Similarity=0.394  Sum_probs=166.8

Q ss_pred             cccCCCCCcceEEEEECCCCCEEEEecCCCcEEEEeCCccccccccCCccccccCCCCceeecCCCCCCCCcccCCCCCc
Q 021657            2 EILTGHQDNAEFALAMCPTEPYVLSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSV   81 (309)
Q Consensus         2 ~~l~~H~~~~V~~~~~~~~~~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (309)
                      +.|.||.. +|+|+.|+..|.+++||+.|..++||.++                                        +.
T Consensus       184 krLlgH~n-aVyca~fDrtg~~Iitgsdd~lvKiwS~e----------------------------------------t~  222 (1113)
T KOG0644|consen  184 KRLLGHRN-AVYCAIFDRTGRYIITGSDDRLVKIWSME----------------------------------------TA  222 (1113)
T ss_pred             HHHHhhhh-heeeeeeccccceEeecCccceeeeeecc----------------------------------------ch
Confidence            56889999 99999999999999999999999999987                                        44


Q ss_pred             CcccccccccCCeEEEEEecCCCcEEEEEcCCCeEEEEEcCCCCcceEEEeeccCCceeEEEeccCCCCeEEEEcCCCcE
Q 021657           82 GPRGIYNGHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSV  161 (309)
Q Consensus        82 ~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i  161 (309)
                      .++..+.||.+.|+.++.+..+ .++++++.|..|++|-+..+.  .+..+.+|.+.|++++|+| -    .+.+.||++
T Consensus       223 ~~lAs~rGhs~ditdlavs~~n-~~iaaaS~D~vIrvWrl~~~~--pvsvLrghtgavtaiafsP-~----~sss~dgt~  294 (1113)
T KOG0644|consen  223 RCLASCRGHSGDITDLAVSSNN-TMIAAASNDKVIRVWRLPDGA--PVSVLRGHTGAVTAIAFSP-R----ASSSDDGTC  294 (1113)
T ss_pred             hhhccCCCCccccchhccchhh-hhhhhcccCceEEEEecCCCc--hHHHHhccccceeeeccCc-c----ccCCCCCce
Confidence            5667788999999999998877 889999999999999999988  7888899999999999999 3    377889999


Q ss_pred             EEEecCC-CCCCCCCCceeeeccCCCCeeEEEEecCCCcEEEEecCCC--------------------------------
Q 021657          162 RMFDRRN-LTSNGVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAEDG--------------------------------  208 (309)
Q Consensus       162 ~i~d~~~-~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~dg--------------------------------  208 (309)
                      ++||.+- +.... ..+. .+. .+..+.++.|..++.. +++++.|+                                
T Consensus       295 ~~wd~r~~~~~y~-prp~-~~~-~~~~~~s~~~~~~~~~-f~Tgs~d~ea~n~e~~~l~~~~~~lif~t~ssd~~~~~~~  370 (1113)
T KOG0644|consen  295 RIWDARLEPRIYV-PRPL-KFT-EKDLVDSILFENNGDR-FLTGSRDGEARNHEFEQLAWRSNLLIFVTRSSDLSSIVVT  370 (1113)
T ss_pred             EeccccccccccC-CCCC-Ccc-cccceeeeeccccccc-cccccCCcccccchhhHhhhhccceEEEecccccccccee
Confidence            9999882 10000 0000 011 1122333334333332 23444443                                


Q ss_pred             -----cEEEEeCCcccccccCCCCCcCCCCceeeeecCCCcceeeEEEccCCCeEEEEecCCCCCCCCCCeEEEEEcccc
Q 021657          209 -----LLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKVVDFHWNASDPWTVVSVSDDCDSTGGGGTLQIWRMSDL  283 (309)
Q Consensus       209 -----~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~s~d~~s~~~dg~v~vw~~~~~  283 (309)
                           .+++|++..               ..+...+.+|...+..+.++|-++.+..+++.|       |...|||+-  
T Consensus       371 ar~~~~~~vwnl~~---------------g~l~H~l~ghsd~~yvLd~Hpfn~ri~msag~d-------gst~iwdi~--  426 (1113)
T KOG0644|consen  371 ARNDHRLCVWNLYT---------------GQLLHNLMGHSDEVYVLDVHPFNPRIAMSAGYD-------GSTIIWDIW--  426 (1113)
T ss_pred             eeeeeEeeeeeccc---------------chhhhhhcccccceeeeeecCCCcHhhhhccCC-------CceEeeecc--
Confidence                 444555444               344556778999999999999999888855555       999999998  


Q ss_pred             ccCChhhHhHhhhcccceEEEeeeCC
Q 021657          284 IYRPQDEVLAELEKFKAHVISCTSKP  309 (309)
Q Consensus       284 ~~~~~~~~~~~~~~h~~~v~~~~~~P  309 (309)
                          .+.+++....-.+.+....|++
T Consensus       427 ----eg~pik~y~~gh~kl~d~kFSq  448 (1113)
T KOG0644|consen  427 ----EGIPIKHYFIGHGKLVDGKFSQ  448 (1113)
T ss_pred             ----cCCcceeeecccceeeccccCC
Confidence                4555554443345666666654

>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]

Probab=99.88  E-value=2e-20  Score=137.89  Aligned_cols=222  Identities=16%  Similarity=0.236  Sum_probs=170.2

Q ss_pred             ceEEEEECCCCCEEEEecCCCcEEEEeCCccccccccCCccccccCCCCceeecCCCCCCCCcccCCCCCcCcccccccc
Q 021657           11 AEFALAMCPTEPYVLSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGH   90 (309)
Q Consensus        11 ~V~~~~~~~~~~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   90 (309)
                      +|+|.+|++|...+|.+-....|.||.....                                     .-.++.+++..|
T Consensus        12 pitchAwn~drt~iAv~~~~~evhiy~~~~~-------------------------------------~~w~~~htls~H   54 (361)
T KOG1523|consen   12 PITCHAWNSDRTQIAVSPNNHEVHIYSMLGA-------------------------------------DLWEPAHTLSEH   54 (361)
T ss_pred             ceeeeeecCCCceEEeccCCceEEEEEecCC-------------------------------------CCceeceehhhh
Confidence            8999999999999999999999999998742                                     114566788899


Q ss_pred             cCCeEEEEEecCCCcEEEEEcCCCeEEEEEc-CCCCcceEEEeeccCCceeEEEeccCCCCeEEEEcCCCcEEEEecCCC
Q 021657           91 EDTVEDVTFCPSSAQEFCSVGDDSCLILWDA-RVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNL  169 (309)
Q Consensus        91 ~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~-~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~  169 (309)
                      ...|+.+.|+|.. +.|++|+.|..-++|.. ..++......+..+....+++.|+| .++.|++|+....|.||-++..
T Consensus        55 d~~vtgvdWap~s-nrIvtcs~drnayVw~~~~~~~WkptlvLlRiNrAAt~V~WsP-~enkFAVgSgar~isVcy~E~E  132 (361)
T KOG1523|consen   55 DKIVTGVDWAPKS-NRIVTCSHDRNAYVWTQPSGGTWKPTLVLLRINRAATCVKWSP-KENKFAVGSGARLISVCYYEQE  132 (361)
T ss_pred             CcceeEEeecCCC-CceeEccCCCCccccccCCCCeeccceeEEEeccceeeEeecC-cCceEEeccCccEEEEEEEecc
Confidence            9999999999998 77999999999999998 5566666677778899999999999 9999999999999999988764


Q ss_pred             CCCCCCCceeeeccCCCCeeEEEEecCCCcEEEEecCCCcEEEEeCCc--ccccccCCCCCcCCCC-ceeeeecCCCcce
Q 021657          170 TSNGVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEK--VGKKVEQGPRTTNYPA-GLFFQHAGHRDKV  246 (309)
Q Consensus       170 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~dg~i~iwd~~~--~~~~~~~~~~~~~~~~-~~~~~~~~~~~~v  246 (309)
                      ...-..+  +.-+.+.+.|++++|+|++- |+++|+.|+.+++|..--  -.+.....+.....|. +++.++....+.+
T Consensus       133 NdWWVsK--hikkPirStv~sldWhpnnV-LlaaGs~D~k~rVfSayIK~Vdekpap~pWgsk~PFG~lm~E~~~~ggwv  209 (361)
T KOG1523|consen  133 NDWWVSK--HIKKPIRSTVTSLDWHPNNV-LLAAGSTDGKCRVFSAYIKGVDEKPAPTPWGSKMPFGQLMSEASSSGGWV  209 (361)
T ss_pred             cceehhh--hhCCccccceeeeeccCCcc-eecccccCcceeEEEEeeeccccCCCCCCCccCCcHHHHHHhhccCCCce
Confidence            3211111  11233567899999999998 688999999999998533  1122222222222332 2344444667899


Q ss_pred             eeEEEccCCCeEEEEecCCCCCCCCCCeEEEEEccc
Q 021657          247 VDFHWNASDPWTVVSVSDDCDSTGGGGTLQIWRMSD  282 (309)
Q Consensus       247 ~~~~~~~~~~~~~~s~s~d~~s~~~dg~v~vw~~~~  282 (309)
                      ..+.|+|+|..|. -.+.       |+.+.+=|...
T Consensus       210 h~v~fs~sG~~la-wv~H-------ds~v~~~da~~  237 (361)
T KOG1523|consen  210 HGVLFSPSGNRLA-WVGH-------DSTVSFVDAAG  237 (361)
T ss_pred             eeeEeCCCCCEee-EecC-------CCceEEeecCC
Confidence            9999999988755 3444       48999988874

>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]

Probab=99.88  E-value=1.5e-20  Score=154.47  Aligned_cols=219  Identities=23%  Similarity=0.387  Sum_probs=160.5

Q ss_pred             cceEEEEECC-CCCEEEEecCCCcEEEEeCCccccccccCCccccccCCCCceeecCCCCCCCCcccCCCCCcCcccccc
Q 021657           10 NAEFALAMCP-TEPYVLSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYN   88 (309)
Q Consensus        10 ~~V~~~~~~~-~~~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   88 (309)
                      ++|+|++|+| +..+|+.|..+|+|.+||+..+......                                  .......
T Consensus       243 s~v~~~~f~p~~p~ll~gG~y~GqV~lWD~~~~~~~~~s----------------------------------~ls~~~~  288 (555)
T KOG1587|consen  243 SEVTCLKFCPFDPNLLAGGCYNGQVVLWDLRKGSDTPPS----------------------------------GLSALEV  288 (555)
T ss_pred             CceeEEEeccCCcceEEeeccCceEEEEEccCCCCCCCc----------------------------------ccccccc
Confidence            4799999999 5677889999999999999865332100                                  0012234


Q ss_pred             cccCCeEEEEEecCC-CcEEEEEcCCCeEEEEEcCCCCcceEEEe----e------ccCCceeEEEeccCCCCeEEEEcC
Q 021657           89 GHEDTVEDVTFCPSS-AQEFCSVGDDSCLILWDARVGTSPVIKVE----K------AHDADLHCVDWNPLDDNLILTGSA  157 (309)
Q Consensus        89 ~~~~~v~~~~~~~~~-~~~l~s~~~dg~i~iwd~~~~~~~~~~~~----~------~~~~~v~~~~~~~~~~~~l~~~~~  157 (309)
                      .|..+++.+.|..+- +.-|++++.||.|..|+++.-..+.....    .      .....+++++|.+.+.+.|++|+.
T Consensus       289 sh~~~v~~vvW~~~~~~~~f~s~ssDG~i~~W~~~~l~~P~e~~~~~~~~~~~~~~~~~~~~t~~~F~~~~p~~FiVGTe  368 (555)
T KOG1587|consen  289 SHSEPVTAVVWLQNEHNTEFFSLSSDGSICSWDTDMLSLPVEGLLLESKKHKGQQSSKAVGATSLKFEPTDPNHFIVGTE  368 (555)
T ss_pred             cCCcCeEEEEEeccCCCCceEEEecCCcEeeeeccccccchhhcccccccccccccccccceeeEeeccCCCceEEEEcC
Confidence            689999999997643 14489999999999999875443211111    1      122468999999988899999999


Q ss_pred             CCcEEEEecCCCCCC--CCCCceeeeccCCCCeeEEEEecCCCcEEEEecCCCcEEEEeCCcccccccCCCCCcCCCCce
Q 021657          158 DNSVRMFDRRNLTSN--GVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGL  235 (309)
Q Consensus       158 dg~i~i~d~~~~~~~--~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~  235 (309)
                      +|.|.--+.......  -..+.+..+..|.++|+++.++|-+..+|.+++ |.+++||.....              ..+
T Consensus       369 ~G~v~~~~r~g~~~~~~~~~~~~~~~~~h~g~v~~v~~nPF~~k~fls~g-DW~vriWs~~~~--------------~~P  433 (555)
T KOG1587|consen  369 EGKVYKGCRKGYTPAPEVSYKGHSTFITHIGPVYAVSRNPFYPKNFLSVG-DWTVRIWSEDVI--------------ASP  433 (555)
T ss_pred             CcEEEEEeccCCcccccccccccccccccCcceEeeecCCCccceeeeec-cceeEeccccCC--------------CCc
Confidence            999987443332110  001335566778999999999999988787777 999999998731              234


Q ss_pred             eeeecCCCcceeeEEEccCCCeEEEEecCCCCCCCCCCeEEEEEccccc
Q 021657          236 FFQHAGHRDKVVDFHWNASDPWTVVSVSDDCDSTGGGGTLQIWRMSDLI  284 (309)
Q Consensus       236 ~~~~~~~~~~v~~~~~~~~~~~~~~s~s~d~~s~~~dg~v~vw~~~~~~  284 (309)
                      ++.+..+...+++++|||..+.+++++..|       |.|.+||+....
T Consensus       434 l~~~~~~~~~v~~vaWSptrpavF~~~d~~-------G~l~iWDLl~~~  475 (555)
T KOG1587|consen  434 LLSLDSSPDYVTDVAWSPTRPAVFATVDGD-------GNLDIWDLLQDD  475 (555)
T ss_pred             chhhhhccceeeeeEEcCcCceEEEEEcCC-------Cceehhhhhccc
Confidence            566677778899999999999999966666       999999998543

>KOG1188 consensus WD40 repeat protein [General function prediction only]

Probab=99.87  E-value=1.5e-20  Score=139.73  Aligned_cols=197  Identities=21%  Similarity=0.329  Sum_probs=150.3

Q ss_pred             CEEEEecCCCcEEEEeCCccccccccCCccccccCCCCceeecCCCCCCCCcccCCCCCcCcccccccccCCeEEEEEec
Q 021657           22 PYVLSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCP  101 (309)
Q Consensus        22 ~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~  101 (309)
                      ..+|++-..|.|++||..                                        +++.+..+.++...++.+.|..
T Consensus        41 ~~vav~lSngsv~lyd~~----------------------------------------tg~~l~~fk~~~~~~N~vrf~~   80 (376)
T KOG1188|consen   41 TAVAVSLSNGSVRLYDKG----------------------------------------TGQLLEEFKGPPATTNGVRFIS   80 (376)
T ss_pred             eeEEEEecCCeEEEEecc----------------------------------------chhhhheecCCCCcccceEEec
Confidence            458888889999999987                                        3455677788888999999976


Q ss_pred             C-CCcEEEEEcCCCeEEEEEcCCCCcceEEEeeccC-CceeEEEeccCCCCeEEEEcC----CCcEEEEecCCCCCCCCC
Q 021657          102 S-SAQEFCSVGDDSCLILWDARVGTSPVIKVEKAHD-ADLHCVDWNPLDDNLILTGSA----DNSVRMFDRRNLTSNGVG  175 (309)
Q Consensus       102 ~-~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~-~~v~~~~~~~~~~~~l~~~~~----dg~i~i~d~~~~~~~~~~  175 (309)
                      . +++.+.+|+.||+|++||++............+. .+..+++..- ..+.+++|..    +..+.+||+|..+     
T Consensus        81 ~ds~h~v~s~ssDG~Vr~wD~Rs~~e~a~~~~~~~~~~~f~~ld~nc-k~~ii~~GtE~~~s~A~v~lwDvR~~q-----  154 (376)
T KOG1188|consen   81 CDSPHGVISCSSDGTVRLWDIRSQAESARISWTQQSGTPFICLDLNC-KKNIIACGTELTRSDASVVLWDVRSEQ-----  154 (376)
T ss_pred             CCCCCeeEEeccCCeEEEEEeecchhhhheeccCCCCCcceEeeccC-cCCeEEeccccccCceEEEEEEecccc-----
Confidence            4 5688999999999999999987765555666665 5677777765 6778888753    5689999999842     


Q ss_pred             Cceee-eccCCCCeeEEEEecCCCcEEEEecCCCcEEEEeCCcccccccCCCCCcCCCCceeeeecCCCcceeeEEEccC
Q 021657          176 SPINK-FEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKVVDFHWNAS  254 (309)
Q Consensus       176 ~~~~~-~~~~~~~v~~~~~~~~~~~l~~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~  254 (309)
                      +++.. ...|...|++++|+|..+.+|++|+.||.|.+||+....+.            ..+.....|...|..+.|..+
T Consensus       155 q~l~~~~eSH~DDVT~lrFHP~~pnlLlSGSvDGLvnlfD~~~d~Ee------------DaL~~viN~~sSI~~igw~~~  222 (376)
T KOG1188|consen  155 QLLRQLNESHNDDVTQLRFHPSDPNLLLSGSVDGLVNLFDTKKDNEE------------DALLHVINHGSSIHLIGWLSK  222 (376)
T ss_pred             chhhhhhhhccCcceeEEecCCCCCeEEeecccceEEeeecCCCcch------------hhHHHhhcccceeeeeeeecC
Confidence            22444 46799999999999999999999999999999999874221            123333457788999999876


Q ss_pred             CCeEEEEecCCCCCCCCCCeEEEEEcccc
Q 021657          255 DPWTVVSVSDDCDSTGGGGTLQIWRMSDL  283 (309)
Q Consensus       255 ~~~~~~s~s~d~~s~~~dg~v~vw~~~~~  283 (309)
                      +=.-+..-+..       .+..+|++++.
T Consensus       223 ~ykrI~clTH~-------Etf~~~ele~~  244 (376)
T KOG1188|consen  223 KYKRIMCLTHM-------ETFAIYELEDG  244 (376)
T ss_pred             CcceEEEEEcc-------CceeEEEccCC
Confidence            62223333333       78999999954

>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]

Probab=99.87  E-value=4.5e-21  Score=137.70  Aligned_cols=163  Identities=12%  Similarity=0.210  Sum_probs=121.2

Q ss_pred             cCCeEEEEEecC-C-CcEEEEEcCCCeEEEEEcCCCCc--------ceEEEeeccCCceeEEEeccCCCCeEEEEcCCCc
Q 021657           91 EDTVEDVTFCPS-S-AQEFCSVGDDSCLILWDARVGTS--------PVIKVEKAHDADLHCVDWNPLDDNLILTGSADNS  160 (309)
Q Consensus        91 ~~~v~~~~~~~~-~-~~~l~s~~~dg~i~iwd~~~~~~--------~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~  160 (309)
                      .+.+.+..+..+ + .-++++|.++|.+.+||+.++..        +.......|..+|.++.|.+ .-..=++|+.+..
T Consensus       150 lgsvmc~~~~~~c~s~~lllaGyEsghvv~wd~S~~~~~~~~~~~~kv~~~~ash~qpvlsldyas-~~~rGisgga~dk  228 (323)
T KOG0322|consen  150 LGSVMCQDKDHACGSTFLLLAGYESGHVVIWDLSTGDKIIQLPQSSKVESPNASHKQPVLSLDYAS-SCDRGISGGADDK  228 (323)
T ss_pred             cCceeeeeccccccceEEEEEeccCCeEEEEEccCCceeeccccccccccchhhccCcceeeeech-hhcCCcCCCcccc
Confidence            345666654322 2 23577888999999999998731        13334457889999999988 6666788888888


Q ss_pred             EEEEecCCCCCCCCCCceeeeccCCCCeeEEEEecCCCcEEEEecCCCcEEEEeCCcccccccCCCCCcCCCCceeeeec
Q 021657          161 VRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHA  240 (309)
Q Consensus       161 i~i~d~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~  240 (309)
                      +..|.+......  .+...+..-....+..+.+-||++ ++|+++.|+.|+||..++               .+++..+.
T Consensus       229 l~~~Sl~~s~gs--lq~~~e~~lknpGv~gvrIRpD~K-IlATAGWD~RiRVyswrt---------------l~pLAVLk  290 (323)
T KOG0322|consen  229 LVMYSLNHSTGS--LQIRKEITLKNPGVSGVRIRPDGK-ILATAGWDHRIRVYSWRT---------------LNPLAVLK  290 (323)
T ss_pred             ceeeeeccccCc--ccccceEEecCCCccceEEccCCc-EEeecccCCcEEEEEecc---------------CCchhhhh
Confidence            999988753210  222223333455688899999999 789999999999999998               56677788


Q ss_pred             CCCcceeeEEEccCCCeEEEEecCCCCCCCCCCeEEEEEc
Q 021657          241 GHRDKVVDFHWNASDPWTVVSVSDDCDSTGGGGTLQIWRM  280 (309)
Q Consensus       241 ~~~~~v~~~~~~~~~~~~~~s~s~d~~s~~~dg~v~vw~~  280 (309)
                      -|...|++++|+|+.+ ++|+       ++.|++|.+|++
T Consensus       291 yHsagvn~vAfspd~~-lmAa-------askD~rISLWkL  322 (323)
T KOG0322|consen  291 YHSAGVNAVAFSPDCE-LMAA-------ASKDARISLWKL  322 (323)
T ss_pred             hhhcceeEEEeCCCCc-hhhh-------ccCCceEEeeec
Confidence            8999999999999755 5664       445599999987

>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]

Probab=99.87  E-value=1.7e-20  Score=151.26  Aligned_cols=244  Identities=11%  Similarity=0.154  Sum_probs=167.8

Q ss_pred             CcccCCCCCcceEEEEECCCCCEEEEecCCCcEEEEeCCccccccccCC-ccccccCCCCceeecCCCCCCCCcccCCCC
Q 021657            1 MEILTGHQDNAEFALAMCPTEPYVLSGGKDKSVVLWSIQDHITSSATDP-ATAKSAGSSGSIIKQSPKPGDGNDKAADGP   79 (309)
Q Consensus         1 l~~l~~H~~~~V~~~~~~~~~~~l~t~~~dg~i~vwd~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   79 (309)
                      |++|+||++ .|+|++|+.||+++|+|+.|+.|.+|+-+-.- ...... ....+...+. ..............+|...
T Consensus        46 lqtLKgHKD-tVycVAys~dGkrFASG~aDK~VI~W~~klEG-~LkYSH~D~IQCMsFNP-~~h~LasCsLsdFglWS~~  122 (1081)
T KOG1538|consen   46 LQPLKGHKD-TVYCVAYAKDGKRFASGSADKSVIIWTSKLEG-ILKYSHNDAIQCMSFNP-ITHQLASCSLSDFGLWSPE  122 (1081)
T ss_pred             ccccccccc-eEEEEEEccCCceeccCCCceeEEEecccccc-eeeeccCCeeeEeecCc-hHHHhhhcchhhccccChh
Confidence            578999999 89999999999999999999999999865320 000000 0000000000 0000011122333445444


Q ss_pred             CcCcccccccccCCeEEEEEecCCCcEEEEEcCCCeEEEEEcCCCCcceEEEeeccCCceeEEEeccCCC----CeEEEE
Q 021657           80 SVGPRGIYNGHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDD----NLILTG  155 (309)
Q Consensus        80 ~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~----~~l~~~  155 (309)
                      .....+  .....+|.+++|..|| ++|+.|-.||+|.|-+....+...+....+..++|.+++|+|..+    ..+++.
T Consensus       123 qK~V~K--~kss~R~~~CsWtnDG-qylalG~~nGTIsiRNk~gEek~~I~Rpgg~Nspiwsi~~~p~sg~G~~di~aV~  199 (1081)
T KOG1538|consen  123 QKSVSK--HKSSSRIICCSWTNDG-QYLALGMFNGTISIRNKNGEEKVKIERPGGSNSPIWSICWNPSSGEGRNDILAVA  199 (1081)
T ss_pred             hhhHHh--hhhheeEEEeeecCCC-cEEEEeccCceEEeecCCCCcceEEeCCCCCCCCceEEEecCCCCCCccceEEEE
Confidence            332211  1134578899999999 999999999999999765444333334445778999999999433    477888


Q ss_pred             cCCCcEEEEecCCCCCCCCCCceeeeccCCCCeeEEEEecCCCcEEEEecCCCcEEEEeCCcccccccCCCCCcCCCCce
Q 021657          156 SADNSVRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGL  235 (309)
Q Consensus       156 ~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~  235 (309)
                      ....++.+|.+.       ++.+..-+...-...|+++.++|++++ .|+.|+.+++|-.+.                ..
T Consensus       200 DW~qTLSFy~Ls-------G~~Igk~r~L~FdP~CisYf~NGEy~L-iGGsdk~L~~fTR~G----------------vr  255 (1081)
T KOG1538|consen  200 DWGQTLSFYQLS-------GKQIGKDRALNFDPCCISYFTNGEYIL-LGGSDKQLSLFTRDG----------------VR  255 (1081)
T ss_pred             eccceeEEEEec-------ceeecccccCCCCchhheeccCCcEEE-EccCCCceEEEeecC----------------eE
Confidence            888888888876       455554444455667999999999876 777799999997654                33


Q ss_pred             eeeecCCCcceeeEEEccCCCeEEEEecCCCCCCCCCCeEEEEEccc
Q 021657          236 FFQHAGHRDKVVDFHWNASDPWTVVSVSDDCDSTGGGGTLQIWRMSD  282 (309)
Q Consensus       236 ~~~~~~~~~~v~~~~~~~~~~~~~~s~s~d~~s~~~dg~v~vw~~~~  282 (309)
                      +.+......+|+.++..|+++++.        .|+.||+|--|++..
T Consensus       256 LGTvg~~D~WIWtV~~~PNsQ~v~--------~GCqDGTiACyNl~f  294 (1081)
T KOG1538|consen  256 LGTVGEQDSWIWTVQAKPNSQYVV--------VGCQDGTIACYNLIF  294 (1081)
T ss_pred             EeeccccceeEEEEEEccCCceEE--------EEEccCeeehhhhHH
Confidence            445555678999999999998877        677779999999863

>KOG1334 consensus WD40 repeat protein [General function prediction only]

Probab=99.87  E-value=3.3e-20  Score=144.00  Aligned_cols=289  Identities=20%  Similarity=0.272  Sum_probs=198.9

Q ss_pred             cccCCCCCcceEEEEECCCCCEEEEecCCCcEEEEeCCccccccccCCccccccCCCCce-----eecCCCCCCCCcccC
Q 021657            2 EILTGHQDNAEFALAMCPTEPYVLSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSI-----IKQSPKPGDGNDKAA   76 (309)
Q Consensus         2 ~~l~~H~~~~V~~~~~~~~~~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~   76 (309)
                      ..|.+|.+ .|..|.|+..|..|++|+.|.+|.+||+........+.........+...+     ..+.....++.+++.
T Consensus       136 ~kL~~H~G-cVntV~FN~~Gd~l~SgSDD~~vv~WdW~~~~~~l~f~SGH~~NvfQaKFiP~s~d~ti~~~s~dgqvr~s  214 (559)
T KOG1334|consen  136 KKLNKHKG-CVNTVHFNQRGDVLASGSDDLQVVVWDWVSGSPKLSFESGHCNNVFQAKFIPFSGDRTIVTSSRDGQVRVS  214 (559)
T ss_pred             hcccCCCC-ccceeeecccCceeeccCccceEEeehhhccCcccccccccccchhhhhccCCCCCcCceeccccCceeee
Confidence            46889999 999999999999999999999999999998866666655444332222211     112223445555555


Q ss_pred             CCCCcC---cccccccccCCeEEEEEecCCCcEEEEEcCCCeEEEEEcCCCCcceEE-EeeccCC---ceeEEEeccCCC
Q 021657           77 DGPSVG---PRGIYNGHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPVIK-VEKAHDA---DLHCVDWNPLDD  149 (309)
Q Consensus        77 ~~~~~~---~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~-~~~~~~~---~v~~~~~~~~~~  149 (309)
                      ......   ....+..|.++|.-++.-|+.+..|.+++.|+.+.-.|++++...... ....+..   ....++..|.+.
T Consensus       215 ~i~~t~~~e~t~rl~~h~g~vhklav~p~sp~~f~S~geD~~v~~~Dlr~~~pa~~~~cr~~~~~~~v~L~~Ia~~P~nt  294 (559)
T KOG1334|consen  215 EILETGYVENTKRLAPHEGPVHKLAVEPDSPKPFLSCGEDAVVFHIDLRQDVPAEKFVCREADEKERVGLYTIAVDPRNT  294 (559)
T ss_pred             eeccccceecceecccccCccceeeecCCCCCcccccccccceeeeeeccCCccceeeeeccCCccceeeeeEecCCCCc
Confidence            443322   245567899999999999999899999999999999999876532222 2223333   578899999777


Q ss_pred             CeEEEEcCCCcEEEEecCCCCCCCCCCceeeec------cCCCCeeEEEEecCCCcEEEEecCCCcEEEEeCCccccccc
Q 021657          150 NLILTGSADNSVRMFDRRNLTSNGVGSPINKFE------GHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVE  223 (309)
Q Consensus       150 ~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~------~~~~~v~~~~~~~~~~~l~~~~~~dg~i~iwd~~~~~~~~~  223 (309)
                      +.+++|+.|..+++||.+....+.....+..+.      .....|++++++.++.-++ +...|-.|+++.-.. +.-..
T Consensus       295 ~~faVgG~dqf~RvYD~R~~~~e~~n~~~~~f~p~hl~~d~~v~ITgl~Ysh~~sElL-aSYnDe~IYLF~~~~-~~G~~  372 (559)
T KOG1334|consen  295 NEFAVGGSDQFARVYDQRRIDKEENNGVLDKFCPHHLVEDDPVNITGLVYSHDGSELL-ASYNDEDIYLFNKSM-GDGSE  372 (559)
T ss_pred             cccccCChhhhhhhhcccchhhccccchhhhcCCccccccCcccceeEEecCCcccee-eeecccceEEecccc-ccCCC
Confidence            899999999999999998765432222233332      2345699999998777777 455577889983322 22211


Q ss_pred             CCCCCcCCCCcee-eeecCCCc--ceeeEEEc-cCCCeEEEEecCCCCCCCCCCeEEEEEccccccCChhhHhHhhhccc
Q 021657          224 QGPRTTNYPAGLF-FQHAGHRD--KVVDFHWN-ASDPWTVVSVSDDCDSTGGGGTLQIWRMSDLIYRPQDEVLAELEKFK  299 (309)
Q Consensus       224 ~~~~~~~~~~~~~-~~~~~~~~--~v~~~~~~-~~~~~~~~s~s~d~~s~~~dg~v~vw~~~~~~~~~~~~~~~~~~~h~  299 (309)
                      .  .........+ ..+++|..  .|..+-|- |. ..++++||+-       |.|.||+-.      +++.+.-+++-.
T Consensus       373 p--~~~s~~~~~~k~vYKGHrN~~TVKgVNFfGPr-sEyVvSGSDC-------GhIFiW~K~------t~eii~~MegDr  436 (559)
T KOG1334|consen  373 P--DPSSPREQYVKRVYKGHRNSRTVKGVNFFGPR-SEYVVSGSDC-------GHIFIWDKK------TGEIIRFMEGDR  436 (559)
T ss_pred             C--CCCcchhhccchhhcccccccccceeeeccCc-cceEEecCcc-------ceEEEEecc------hhHHHHHhhccc
Confidence            1  1111001111 22677754  57777764 54 4456666555       999999999      899999999988


Q ss_pred             ceEEEeeeCC
Q 021657          300 AHVISCTSKP  309 (309)
Q Consensus       300 ~~v~~~~~~P  309 (309)
                      ..|.|+.-||
T Consensus       437 ~VVNCLEpHP  446 (559)
T KOG1334|consen  437 HVVNCLEPHP  446 (559)
T ss_pred             ceEeccCCCC
Confidence            8999998887

>KOG0649 consensus WD40 repeat protein [General function prediction only]

Probab=99.87  E-value=2.5e-20  Score=132.47  Aligned_cols=213  Identities=21%  Similarity=0.337  Sum_probs=145.7

Q ss_pred             ceEEEEECCCCCEEEEecCCCcEEEEeCCccccccccCCccccccCCCCceeecCCCCCCCCcccCCCCCcCcccccccc
Q 021657           11 AEFALAMCPTEPYVLSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGH   90 (309)
Q Consensus        11 ~V~~~~~~~~~~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   90 (309)
                      .|.+-+++|.+++|+.|..+|.|-+..+.+........+                              ...++-..++|
T Consensus        12 tvf~qa~sp~~~~l~agn~~G~iav~sl~sl~s~sa~~~------------------------------gk~~iv~eqah   61 (325)
T KOG0649|consen   12 TVFAQAISPSKQYLFAGNLFGDIAVLSLKSLDSGSAEPP------------------------------GKLKIVPEQAH   61 (325)
T ss_pred             HHHHHhhCCcceEEEEecCCCeEEEEEehhhhccccCCC------------------------------CCcceeecccc
Confidence            467788999999999999999999999975432222111                              22233445789


Q ss_pred             cCCeEEEEEecCCCcEEEEEcCCCeEEEEEcCCCCc-----------ceEEEeeccCCceeEEEeccCCCCeEEEEcCCC
Q 021657           91 EDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTS-----------PVIKVEKAHDADLHCVDWNPLDDNLILTGSADN  159 (309)
Q Consensus        91 ~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~-----------~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg  159 (309)
                      .++|+.++|..   .+|++|+ ||.|+-|..+....           +..+.-...-..|++|...| ..+-++.++.|+
T Consensus        62 dgpiy~~~f~d---~~Lls~g-dG~V~gw~W~E~~es~~~K~lwe~~~P~~~~~~evPeINam~ldP-~enSi~~AgGD~  136 (325)
T KOG0649|consen   62 DGPIYYLAFHD---DFLLSGG-DGLVYGWEWNEEEESLATKRLWEVKIPMQVDAVEVPEINAMWLDP-SENSILFAGGDG  136 (325)
T ss_pred             CCCeeeeeeeh---hheeecc-CceEEEeeehhhhhhccchhhhhhcCccccCcccCCccceeEecc-CCCcEEEecCCe
Confidence            99999999983   4577765 49999998765331           01111111224689999999 555555566899


Q ss_pred             cEEEEecCCCCCCCCCCceeeeccCCCCeeEEEEecCCCcEEEEecCCCcEEEEeCCcccccccCCCCCcCCCCceeeee
Q 021657          160 SVRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQH  239 (309)
Q Consensus       160 ~i~i~d~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~  239 (309)
                      .++-||+++      ++..+++++|...|.++.-......+| +|++||++++||.++.+......+...      -..+
T Consensus       137 ~~y~~dlE~------G~i~r~~rGHtDYvH~vv~R~~~~qil-sG~EDGtvRvWd~kt~k~v~~ie~yk~------~~~l  203 (325)
T KOG0649|consen  137 VIYQVDLED------GRIQREYRGHTDYVHSVVGRNANGQIL-SGAEDGTVRVWDTKTQKHVSMIEPYKN------PNLL  203 (325)
T ss_pred             EEEEEEecC------CEEEEEEcCCcceeeeeeecccCccee-ecCCCccEEEEeccccceeEEeccccC------hhhc
Confidence            999999999      999999999999999999844444455 999999999999998443322111111      0011


Q ss_pred             cCC-CcceeeEEEccCCCeEEEEecCCCCCCCCCCeEEEEEccc
Q 021657          240 AGH-RDKVVDFHWNASDPWTVVSVSDDCDSTGGGGTLQIWRMSD  282 (309)
Q Consensus       240 ~~~-~~~v~~~~~~~~~~~~~~s~s~d~~s~~~dg~v~vw~~~~  282 (309)
                      ..| ..+|-+++-+  ..+++.         |....+.+|+++.
T Consensus       204 Rp~~g~wigala~~--edWlvC---------GgGp~lslwhLrs  236 (325)
T KOG0649|consen  204 RPDWGKWIGALAVN--EDWLVC---------GGGPKLSLWHLRS  236 (325)
T ss_pred             CcccCceeEEEecc--CceEEe---------cCCCceeEEeccC
Confidence            222 2356666655  446553         3336899999993

>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]

Probab=99.86  E-value=7.1e-21  Score=152.57  Aligned_cols=213  Identities=15%  Similarity=0.286  Sum_probs=157.0

Q ss_pred             CcceEEEEECC-CCCEEEEecCCCcEEEEeCCccccccccCCccccccCCCCceeecCCCCCCCCcccCCCCCcCccccc
Q 021657            9 DNAEFALAMCP-TEPYVLSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIY   87 (309)
Q Consensus         9 ~~~V~~~~~~~-~~~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   87 (309)
                      +..|+.+.|+| |...||.++.||.|++|.+..+-..                                 .....+...+
T Consensus       627 gt~vtDl~WdPFD~~rLAVa~ddg~i~lWr~~a~gl~---------------------------------e~~~tPe~~l  673 (1012)
T KOG1445|consen  627 GTLVTDLHWDPFDDERLAVATDDGQINLWRLTANGLP---------------------------------ENEMTPEKIL  673 (1012)
T ss_pred             CceeeecccCCCChHHeeecccCceEEEEEeccCCCC---------------------------------cccCCcceee
Confidence            34699999999 7789999999999999999753111                                 1233456678


Q ss_pred             ccccCCeEEEEEecCCCcEEEEEcCCCeEEEEEcCCCCcceEEEeeccCCceeEEEeccCCCCeEEEEcCCCcEEEEecC
Q 021657           88 NGHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRR  167 (309)
Q Consensus        88 ~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~  167 (309)
                      ..|...|+++.|+|--...|++++.|-+|++||+.+.+  ....+.+|.+.|..++|+| +|+.+++.+.||+|++|+.+
T Consensus       674 t~h~eKI~slRfHPLAadvLa~asyd~Ti~lWDl~~~~--~~~~l~gHtdqIf~~AWSp-dGr~~AtVcKDg~~rVy~Pr  750 (1012)
T KOG1445|consen  674 TIHGEKITSLRFHPLAADVLAVASYDSTIELWDLANAK--LYSRLVGHTDQIFGIAWSP-DGRRIATVCKDGTLRVYEPR  750 (1012)
T ss_pred             ecccceEEEEEecchhhhHhhhhhccceeeeeehhhhh--hhheeccCcCceeEEEECC-CCcceeeeecCceEEEeCCC
Confidence            89999999999999877899999999999999999988  6778889999999999999 99999999999999999998


Q ss_pred             CCCCCCCCCceeeeccCC-CCeeEEEEecCCCcEEEEecC---CCcEEEEeCCcccccccCCCCCcCCCCceeeeecCC-
Q 021657          168 NLTSNGVGSPINKFEGHS-AAVLCVQWSPDKSSVFGSSAE---DGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGH-  242 (309)
Q Consensus       168 ~~~~~~~~~~~~~~~~~~-~~v~~~~~~~~~~~l~~~~~~---dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~-  242 (309)
                      ..     .+++++-.+.. ..-..|.|.-+|++++++|-+   ..+|.+||..+..-             ..++...-. 
T Consensus       751 s~-----e~pv~Eg~gpvgtRgARi~wacdgr~viv~Gfdk~SeRQv~~Y~Aq~l~~-------------~pl~t~~lDv  812 (1012)
T KOG1445|consen  751 SR-----EQPVYEGKGPVGTRGARILWACDGRIVIVVGFDKSSERQVQMYDAQTLDL-------------RPLYTQVLDV  812 (1012)
T ss_pred             CC-----CCccccCCCCccCcceeEEEEecCcEEEEecccccchhhhhhhhhhhccC-------------Ccceeeeecc
Confidence            74     34454443322 223468899999987766642   35688888766220             111111100 


Q ss_pred             CcceeeEEEccCCCeEEEEecCCCCCCCCCCeEEEEEccc
Q 021657          243 RDKVVDFHWNASDPWTVVSVSDDCDSTGGGGTLQIWRMSD  282 (309)
Q Consensus       243 ~~~v~~~~~~~~~~~~~~s~s~d~~s~~~dg~v~vw~~~~  282 (309)
                      ...+.--.+.+|.+.+++       ||-.|..|.+|.+-.
T Consensus       813 aps~LvP~YD~Ds~~lfl-------tGKGD~~v~~yEv~~  845 (1012)
T KOG1445|consen  813 APSPLVPHYDYDSNVLFL-------TGKGDRFVNMYEVIY  845 (1012)
T ss_pred             cCccccccccCCCceEEE-------ecCCCceEEEEEecC
Confidence            001111234566677777       555669999999863

>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.86  E-value=2.6e-20  Score=142.04  Aligned_cols=202  Identities=16%  Similarity=0.259  Sum_probs=146.6

Q ss_pred             EEEEECCCCCEEEEecCCCcEEEEeCCccccccccCCccccccCCCCceeecCCCCCCCCcccCCCCCcCcccccccccC
Q 021657           13 FALAMCPTEPYVLSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHED   92 (309)
Q Consensus        13 ~~~~~~~~~~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   92 (309)
                      .+++|+++|..|++|+.||++|||++.+                                        ...+.....|.+
T Consensus       148 k~vaf~~~gs~latgg~dg~lRv~~~Ps----------------------------------------~~t~l~e~~~~~  187 (398)
T KOG0771|consen  148 KVVAFNGDGSKLATGGTDGTLRVWEWPS----------------------------------------MLTILEEIAHHA  187 (398)
T ss_pred             eEEEEcCCCCEeeeccccceEEEEecCc----------------------------------------chhhhhhHhhcC
Confidence            5899999999999999999999999763                                        333445567899


Q ss_pred             CeEEEEEecCCCcEEEEEcCCCeEEEEEcCCCCcceEEEeeccCCceeEEEeccCCC-----CeEEEEcCCCcEEEEecC
Q 021657           93 TVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDD-----NLILTGSADNSVRMFDRR  167 (309)
Q Consensus        93 ~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-----~~l~~~~~dg~i~i~d~~  167 (309)
                      .|.++.|+||| .+|++-+.| ..+||+++++...........+.....+.|+. ++     ..++.....+.|+.||+.
T Consensus       188 eV~DL~FS~dg-k~lasig~d-~~~VW~~~~g~~~a~~t~~~k~~~~~~cRF~~-d~~~~~l~laa~~~~~~~v~~~~~~  264 (398)
T KOG0771|consen  188 EVKDLDFSPDG-KFLASIGAD-SARVWSVNTGAALARKTPFSKDEMFSSCRFSV-DNAQETLRLAASQFPGGGVRLCDIS  264 (398)
T ss_pred             ccccceeCCCC-cEEEEecCC-ceEEEEeccCchhhhcCCcccchhhhhceecc-cCCCceEEEEEecCCCCceeEEEee
Confidence            99999999999 889999999 89999999885222222233345567778876 54     233334445678888776


Q ss_pred             CCCCCCCCCceeeeccCCCCeeEEEEecCCCcEEEEecCCCcEEEEeCCcccccccCCCCCcCCCCceeeeecCCCccee
Q 021657          168 NLTSNGVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKVV  247 (309)
Q Consensus       168 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~  247 (309)
                      ........ +.++.......|++++.+++|++ +|.|+.||.|.|++......              ..+.-..|...|+
T Consensus       265 ~w~~~~~l-~~~~~~~~~~siSsl~VS~dGkf-~AlGT~dGsVai~~~~~lq~--------------~~~vk~aH~~~VT  328 (398)
T KOG0771|consen  265 LWSGSNFL-RLRKKIKRFKSISSLAVSDDGKF-LALGTMDGSVAIYDAKSLQR--------------LQYVKEAHLGFVT  328 (398)
T ss_pred             eecccccc-chhhhhhccCcceeEEEcCCCcE-EEEeccCCcEEEEEeceeee--------------eEeehhhheeeee
Confidence            53211001 12222223457999999999995 78999999999999987222              2344567999999


Q ss_pred             eEEEccCCCeEEEEecCCCCCCCCCCeEEEEEcc
Q 021657          248 DFHWNASDPWTVVSVSDDCDSTGGGGTLQIWRMS  281 (309)
Q Consensus       248 ~~~~~~~~~~~~~s~s~d~~s~~~dg~v~vw~~~  281 (309)
                      .+.|+|+.+++.        +.+.|....|..+.
T Consensus       329 ~ltF~Pdsr~~~--------svSs~~~~~v~~l~  354 (398)
T KOG0771|consen  329 GLTFSPDSRYLA--------SVSSDNEAAVTKLA  354 (398)
T ss_pred             eEEEcCCcCccc--------ccccCCceeEEEEe
Confidence            999999888766        44444788888776

>KOG2048 consensus WD40 repeat protein [General function prediction only]

Probab=99.86  E-value=9.3e-20  Score=146.71  Aligned_cols=249  Identities=16%  Similarity=0.169  Sum_probs=176.2

Q ss_pred             cccCCCCCcceEEEEECCCCCEEEEecCCCcEEEEeCCccccccccCCccccc--cCCCCceeecCCCCCCCCcccCCCC
Q 021657            2 EILTGHQDNAEFALAMCPTEPYVLSGGKDKSVVLWSIQDHITSSATDPATAKS--AGSSGSIIKQSPKPGDGNDKAADGP   79 (309)
Q Consensus         2 ~~l~~H~~~~V~~~~~~~~~~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~   79 (309)
                      ..+.||++..|-+++|+ ++.+|++.+.+|.|.-||+.+..............  ............+..++.+......
T Consensus        62 ~vi~g~~drsIE~L~W~-e~~RLFS~g~sg~i~EwDl~~lk~~~~~d~~gg~IWsiai~p~~~~l~IgcddGvl~~~s~~  140 (691)
T KOG2048|consen   62 PVIHGPEDRSIESLAWA-EGGRLFSSGLSGSITEWDLHTLKQKYNIDSNGGAIWSIAINPENTILAIGCDDGVLYDFSIG  140 (691)
T ss_pred             EEEecCCCCceeeEEEc-cCCeEEeecCCceEEEEecccCceeEEecCCCcceeEEEeCCccceEEeecCCceEEEEecC
Confidence            35788988899999999 56679999999999999999875444333322211  1111111222223344444444444


Q ss_pred             CcC--cccccccccCCeEEEEEecCCCcEEEEEcCCCeEEEEEcCCCCcceEEEe-----e-ccCCceeEEEeccCCCCe
Q 021657           80 SVG--PRGIYNGHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPVIKVE-----K-AHDADLHCVDWNPLDDNL  151 (309)
Q Consensus        80 ~~~--~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~-----~-~~~~~v~~~~~~~~~~~~  151 (309)
                      ...  ....+...+++|.++.|+|++ ..+++|+.||.|++||+.++....+...     . ....-|+++.|-.  ...
T Consensus       141 p~~I~~~r~l~rq~sRvLslsw~~~~-~~i~~Gs~Dg~Iriwd~~~~~t~~~~~~~~d~l~k~~~~iVWSv~~Lr--d~t  217 (691)
T KOG2048|consen  141 PDKITYKRSLMRQKSRVLSLSWNPTG-TKIAGGSIDGVIRIWDVKSGQTLHIITMQLDRLSKREPTIVWSVLFLR--DST  217 (691)
T ss_pred             CceEEEEeecccccceEEEEEecCCc-cEEEecccCceEEEEEcCCCceEEEeeecccccccCCceEEEEEEEee--cCc
Confidence            333  334455567899999999999 7799999999999999988873221111     1 1233577888775  678


Q ss_pred             EEEEcCCCcEEEEecCCCCCCCCCCceeeeccCCCCeeEEEEecCCCcEEEEecCCCcEEEEeCCcccccccCCCCCcCC
Q 021657          152 ILTGSADNSVRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNY  231 (309)
Q Consensus       152 l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~  231 (309)
                      +++|...|+|.+||...      +..++.+..|...|.+++..+++.+++ +++.|+.|..|.....+..          
T Consensus       218 I~sgDS~G~V~FWd~~~------gTLiqS~~~h~adVl~Lav~~~~d~vf-saGvd~~ii~~~~~~~~~~----------  280 (691)
T KOG2048|consen  218 IASGDSAGTVTFWDSIF------GTLIQSHSCHDADVLALAVADNEDRVF-SAGVDPKIIQYSLTTNKSE----------  280 (691)
T ss_pred             EEEecCCceEEEEcccC------cchhhhhhhhhcceeEEEEcCCCCeEE-EccCCCceEEEEecCCccc----------
Confidence            99999999999999999      999999999999999999999988765 8889999988887763331          


Q ss_pred             CCceeeeecCCCcceeeEEEccCCCeEEEEecCCCCCCCCCCeEEEEEccc
Q 021657          232 PAGLFFQHAGHRDKVVDFHWNASDPWTVVSVSDDCDSTGGGGTLQIWRMSD  282 (309)
Q Consensus       232 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~s~d~~s~~~dg~v~vw~~~~  282 (309)
                       .........|...|.+++..++  .++        +||.|..+.+-....
T Consensus       281 -wv~~~~r~~h~hdvrs~av~~~--~l~--------sgG~d~~l~i~~s~~  320 (691)
T KOG2048|consen  281 -WVINSRRDLHAHDVRSMAVIEN--ALI--------SGGRDFTLAICSSRE  320 (691)
T ss_pred             -eeeeccccCCcccceeeeeecc--eEE--------ecceeeEEEEccccc
Confidence             1122344668888999998875  344        566667777766653

>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]

Probab=99.86  E-value=1.1e-20  Score=142.94  Aligned_cols=172  Identities=19%  Similarity=0.360  Sum_probs=141.0

Q ss_pred             cccccccCCeEEEEEecCCCcEEEEEcCCCeEEEEEcCCCCc-----ceEEEeeccCCceeEEEeccCCCCeEEEEcCCC
Q 021657           85 GIYNGHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTS-----PVIKVEKAHDADLHCVDWNPLDDNLILTGSADN  159 (309)
Q Consensus        85 ~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~-----~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg  159 (309)
                      -.+.+|+++|.++.|+|.+.+.+|+|++|.+|.||++..+..     ..+..+.+|...|--++|+|.-.+.|++++.|.
T Consensus        75 P~v~GHt~~vLDi~w~PfnD~vIASgSeD~~v~vW~IPe~~l~~~ltepvv~L~gH~rrVg~V~wHPtA~NVLlsag~Dn  154 (472)
T KOG0303|consen   75 PLVCGHTAPVLDIDWCPFNDCVIASGSEDTKVMVWQIPENGLTRDLTEPVVELYGHQRRVGLVQWHPTAPNVLLSAGSDN  154 (472)
T ss_pred             CCccCccccccccccCccCCceeecCCCCceEEEEECCCcccccCcccceEEEeecceeEEEEeecccchhhHhhccCCc
Confidence            346799999999999999889999999999999999865431     246678899999999999998889999999999


Q ss_pred             cEEEEecCCCCCCCCCCceeeeccCCCCeeEEEEecCCCcEEEEecCCCcEEEEeCCcccccccCCCCCcCCCCceeeee
Q 021657          160 SVRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQH  239 (309)
Q Consensus       160 ~i~i~d~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~  239 (309)
                      +|.+|++.+      ++.+.++. |...|.+++|+.||.. +++.+.|..|+|||.+.               ...+...
T Consensus       155 ~v~iWnv~t------geali~l~-hpd~i~S~sfn~dGs~-l~TtckDKkvRv~dpr~---------------~~~v~e~  211 (472)
T KOG0303|consen  155 TVSIWNVGT------GEALITLD-HPDMVYSMSFNRDGSL-LCTTCKDKKVRVIDPRR---------------GTVVSEG  211 (472)
T ss_pred             eEEEEeccC------CceeeecC-CCCeEEEEEeccCCce-eeeecccceeEEEcCCC---------------CcEeeec
Confidence            999999999      88888888 9999999999999995 78999999999999998               3334444


Q ss_pred             cCCCc-ceeeEEEccCCCeEEEEecCCCCCCCCCCeEEEEEccccc
Q 021657          240 AGHRD-KVVDFHWNASDPWTVVSVSDDCDSTGGGGTLQIWRMSDLI  284 (309)
Q Consensus       240 ~~~~~-~v~~~~~~~~~~~~~~s~s~d~~s~~~dg~v~vw~~~~~~  284 (309)
                      .+|.+ .-..+.|-.++.  +++.+.   +--.+..+-+||..++.
T Consensus       212 ~~heG~k~~Raifl~~g~--i~tTGf---sr~seRq~aLwdp~nl~  252 (472)
T KOG0303|consen  212 VAHEGAKPARAIFLASGK--IFTTGF---SRMSERQIALWDPNNLE  252 (472)
T ss_pred             ccccCCCcceeEEeccCc--eeeecc---ccccccceeccCccccc
Confidence            55654 334555666565  444443   55678999999988653

>COG2319 FOG: WD40 repeat [General function prediction only]

Probab=99.86  E-value=9.7e-19  Score=145.46  Aligned_cols=264  Identities=25%  Similarity=0.482  Sum_probs=194.8

Q ss_pred             ccCCCCCcceEEEEECCCCCEEEEecCCCcEEEEeCCccc-cccccCC-----cccccc-CCCCceeecCCCCCCCCccc
Q 021657            3 ILTGHQDNAEFALAMCPTEPYVLSGGKDKSVVLWSIQDHI-TSSATDP-----ATAKSA-GSSGSIIKQSPKPGDGNDKA   75 (309)
Q Consensus         3 ~l~~H~~~~V~~~~~~~~~~~l~t~~~dg~i~vwd~~~~~-~~~~~~~-----~~~~~~-~~~~~~~~~~~~~~~~~~~~   75 (309)
                      .+.+|.. .|.++.+.+.+..++.++.|+.+.+|+..... .......     ...... ..............++.+.+
T Consensus        60 ~~~~~~~-~i~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~  138 (466)
T COG2319          60 LLRGHED-SITSIAFSPDGELLLSGSSDGTIKLWDLDNGEKLIKSLEGLHDSSVSKLALSSPDGNSILLASSSLDGTVKL  138 (466)
T ss_pred             eeeeccc-eEEEEEECCCCcEEEEecCCCcEEEEEcCCCceeEEEEeccCCCceeeEEEECCCcceEEeccCCCCccEEE
Confidence            3567887 89999999999999999999999999998774 2221111     111111 11122233333444778889


Q ss_pred             CCCCC-cCcccccccccCCeEEEEEecCCCcEEEEEcC-CCeEEEEEcCCCCcceEEEeeccCCceeEEEeccCCCC-eE
Q 021657           76 ADGPS-VGPRGIYNGHEDTVEDVTFCPSSAQEFCSVGD-DSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDN-LI  152 (309)
Q Consensus        76 ~~~~~-~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~-dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~-~l  152 (309)
                      |+... ......+..|...|..+.|+|++ ..+++++. |+.+++|++....  ....+..|...+.+++|+| ++. .+
T Consensus       139 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~v~~~~~~~-~~~~~~  214 (466)
T COG2319         139 WDLSTPGKLIRTLEGHSESVTSLAFSPDG-KLLASGSSLDGTIKLWDLRTGK--PLSTLAGHTDPVSSLAFSP-DGGLLI  214 (466)
T ss_pred             EEecCCCeEEEEEecCcccEEEEEECCCC-CEEEecCCCCCceEEEEcCCCc--eEEeeccCCCceEEEEEcC-CcceEE
Confidence            98887 77788889999999999999998 57777775 9999999998755  6777777999999999998 777 55


Q ss_pred             EEEcCCCcEEEEecCCCCCCCCCCcee-eeccCCCCeeEEEEecCCCcEEEEecCCCcEEEEeCCcccccccCCCCCcCC
Q 021657          153 LTGSADNSVRMFDRRNLTSNGVGSPIN-KFEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNY  231 (309)
Q Consensus       153 ~~~~~dg~i~i~d~~~~~~~~~~~~~~-~~~~~~~~v~~~~~~~~~~~l~~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~  231 (309)
                      ++++.|+.|++||...      +..+. .+..|.... ...|+|++. ++++++.|+.+++|+++....           
T Consensus       215 ~~~~~d~~i~~wd~~~------~~~~~~~~~~~~~~~-~~~~~~~~~-~~~~~~~d~~~~~~~~~~~~~-----------  275 (466)
T COG2319         215 ASGSSDGTIRLWDLST------GKLLRSTLSGHSDSV-VSSFSPDGS-LLASGSSDGTIRLWDLRSSSS-----------  275 (466)
T ss_pred             EEecCCCcEEEEECCC------CcEEeeecCCCCcce-eEeECCCCC-EEEEecCCCcEEEeeecCCCc-----------
Confidence            5558999999998886      66776 677777765 348999996 456999999999999987332           


Q ss_pred             CCceeeeecCCCcceeeEEEccCCCeEEEEecCCCCCCCCCCeEEEEEccccccCChhhHhHhh--hcccceEEEeee
Q 021657          232 PAGLFFQHAGHRDKVVDFHWNASDPWTVVSVSDDCDSTGGGGTLQIWRMSDLIYRPQDEVLAEL--EKFKAHVISCTS  307 (309)
Q Consensus       232 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~s~d~~s~~~dg~v~vw~~~~~~~~~~~~~~~~~--~~h~~~v~~~~~  307 (309)
                         .+....+|...+.++.|+|++..+++ ++.       |+.+.+|++..      .......  ..|...+..+.|
T Consensus       276 ---~~~~~~~~~~~v~~~~~~~~~~~~~~-~~~-------d~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~  336 (466)
T COG2319         276 ---LLRTLSGHSSSVLSVAFSPDGKLLAS-GSS-------DGTVRLWDLET------GKLLSSLTLKGHEGPVSSLSF  336 (466)
T ss_pred             ---EEEEEecCCccEEEEEECCCCCEEEE-eeC-------CCcEEEEEcCC------CceEEEeeecccCCceEEEEE
Confidence               12222678899999999997777663 444       47899998873      3322333  366666776665

>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]

Probab=99.86  E-value=1.1e-20  Score=139.68  Aligned_cols=218  Identities=22%  Similarity=0.389  Sum_probs=155.8

Q ss_pred             cccCCCCCcceEEEEECCC-CCEEEEecCCCcEEEEeCCccccccccCCccccccCCCCceeecCCCCCCCCcccCCCCC
Q 021657            2 EILTGHQDNAEFALAMCPT-EPYVLSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPS   80 (309)
Q Consensus         2 ~~l~~H~~~~V~~~~~~~~-~~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (309)
                      +.+.||.+ +|+.+.++|+ .++++++|.|..||+|++++..+...+.                                
T Consensus       129 ~~~~ghG~-sINeik~~p~~~qlvls~SkD~svRlwnI~~~~Cv~VfG--------------------------------  175 (385)
T KOG1034|consen  129 KNYRGHGG-SINEIKFHPDRPQLVLSASKDHSVRLWNIQTDVCVAVFG--------------------------------  175 (385)
T ss_pred             cceeccCc-cchhhhcCCCCCcEEEEecCCceEEEEeccCCeEEEEec--------------------------------
Confidence            45789998 8999999996 4788999999999999999765443332                                


Q ss_pred             cCcccccccccCCeEEEEEecCCCcEEEEEcCCCeEEEEEcCCCCc--------------------------ceEEEeec
Q 021657           81 VGPRGIYNGHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTS--------------------------PVIKVEKA  134 (309)
Q Consensus        81 ~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~--------------------------~~~~~~~~  134 (309)
                           -+.+|...|.++.|+++| .+|++|+.|.+|++|++...+.                          +...+..-
T Consensus       176 -----G~egHrdeVLSvD~~~~g-d~i~ScGmDhslk~W~l~~~~f~~~lE~s~~~~~~~t~~pfpt~~~~fp~fst~di  249 (385)
T KOG1034|consen  176 -----GVEGHRDEVLSVDFSLDG-DRIASCGMDHSLKLWRLNVKEFKNKLELSITYSPNKTTRPFPTPKTHFPDFSTTDI  249 (385)
T ss_pred             -----ccccccCcEEEEEEcCCC-CeeeccCCcceEEEEecChhHHhhhhhhhcccCCCCccCcCCcccccccccccccc
Confidence                 256899999999999999 6899999999999999973210                          01112345


Q ss_pred             cCCceeEEEeccCCCCeEEEEcCCCcEEEEecCCCCC--------CCCCCceeeeccCCCCeeEE--EEecCCCcEEEEe
Q 021657          135 HDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTS--------NGVGSPINKFEGHSAAVLCV--QWSPDKSSVFGSS  204 (309)
Q Consensus       135 ~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~--------~~~~~~~~~~~~~~~~v~~~--~~~~~~~~l~~~~  204 (309)
                      |...|.|+.|   -++++++-+.++.|..|.......        +.....+.++......|.-|  +|.|-++. ||.|
T Consensus       250 HrnyVDCvrw---~gd~ilSkscenaI~~w~pgkl~e~~~~vkp~es~~Ti~~~~~~~~c~iWfirf~~d~~~~~-la~g  325 (385)
T KOG1034|consen  250 HRNYVDCVRW---FGDFILSKSCENAIVCWKPGKLEESIHNVKPPESATTILGEFDYPMCDIWFIRFAFDPWQKM-LALG  325 (385)
T ss_pred             ccchHHHHHH---HhhheeecccCceEEEEecchhhhhhhccCCCccceeeeeEeccCccceEEEEEeecHHHHH-Hhhc
Confidence            7778888888   468999999999999998732211        11122334444444444444  45676774 6899


Q ss_pred             cCCCcEEEEeCCcccccccCCCCCcCCCCceeeeecCCCcceeeEEEccCCCeEEEEecCCCCCCCCCCeEEEEEcc
Q 021657          205 AEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKVVDFHWNASDPWTVVSVSDDCDSTGGGGTLQIWRMS  281 (309)
Q Consensus       205 ~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~s~d~~s~~~dg~v~vw~~~  281 (309)
                      ...|.+.+||++...++..           .-....-....|...+|+.++..+++.+.        |++|.-||..
T Consensus       326 nq~g~v~vwdL~~~ep~~~-----------ttl~~s~~~~tVRQ~sfS~dgs~lv~vcd--------d~~Vwrwdrv  383 (385)
T KOG1034|consen  326 NQSGKVYVWDLDNNEPPKC-----------TTLTHSKSGSTVRQTSFSRDGSILVLVCD--------DGTVWRWDRV  383 (385)
T ss_pred             cCCCcEEEEECCCCCCccC-----------ceEEeccccceeeeeeecccCcEEEEEeC--------CCcEEEEEee
Confidence            9999999999998443211           11122223467999999999987775443        3899888864

>KOG1274 consensus WD40 repeat protein [General function prediction only]

Probab=99.85  E-value=1.2e-19  Score=150.76  Aligned_cols=180  Identities=19%  Similarity=0.355  Sum_probs=145.1

Q ss_pred             ceEEEEECCCCCEEEEecCCCcEEEEeCCccccccccCCccccccCCCCceeecCCCCCCCCcccCCCCCcCcccccccc
Q 021657           11 AEFALAMCPTEPYVLSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGH   90 (309)
Q Consensus        11 ~V~~~~~~~~~~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   90 (309)
                      ++++++|+-+|+++|.||.|-.|++-++.+                                        ......+++|
T Consensus        98 p~r~~~v~g~g~~iaagsdD~~vK~~~~~D----------------------------------------~s~~~~lrgh  137 (933)
T KOG1274|consen   98 PIRDLAVSGSGKMIAAGSDDTAVKLLNLDD----------------------------------------SSQEKVLRGH  137 (933)
T ss_pred             cceEEEEecCCcEEEeecCceeEEEEeccc----------------------------------------cchheeeccc
Confidence            789999999999999999999999999874                                        2335678899


Q ss_pred             cCCeEEEEEecCCCcEEEEEcCCCeEEEEEcCCCCcceEEEeec-------c-CCceeEEEeccCCCCeEEEEcCCCcEE
Q 021657           91 EDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPVIKVEKA-------H-DADLHCVDWNPLDDNLILTGSADNSVR  162 (309)
Q Consensus        91 ~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~-------~-~~~v~~~~~~~~~~~~l~~~~~dg~i~  162 (309)
                      .++|.++.|+|.+ .+||+.+-||.|++||+.++.  ....+.+       . ...+..++|+| .+..|+....|+.|.
T Consensus       138 ~apVl~l~~~p~~-~fLAvss~dG~v~iw~~~~~~--~~~tl~~v~k~n~~~~s~i~~~~aW~P-k~g~la~~~~d~~Vk  213 (933)
T KOG1274|consen  138 DAPVLQLSYDPKG-NFLAVSSCDGKVQIWDLQDGI--LSKTLTGVDKDNEFILSRICTRLAWHP-KGGTLAVPPVDNTVK  213 (933)
T ss_pred             CCceeeeeEcCCC-CEEEEEecCceEEEEEcccch--hhhhcccCCccccccccceeeeeeecC-CCCeEEeeccCCeEE
Confidence            9999999999999 899999999999999998776  2222211       1 35677899999 777777778899999


Q ss_pred             EEecCCCCCCCCCCceeeecc--CCCCeeEEEEecCCCcEEEEecCCCcEEEEeCCcccccccCCCCCcCCCCceeeeec
Q 021657          163 MFDRRNLTSNGVGSPINKFEG--HSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHA  240 (309)
Q Consensus       163 i~d~~~~~~~~~~~~~~~~~~--~~~~v~~~~~~~~~~~l~~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~  240 (309)
                      +|+...      +.....+..  +...+..++|+|+|.| +|+++.||.|.|||..+..                   ..
T Consensus       214 vy~r~~------we~~f~Lr~~~~ss~~~~~~wsPnG~Y-iAAs~~~g~I~vWnv~t~~-------------------~~  267 (933)
T KOG1274|consen  214 VYSRKG------WELQFKLRDKLSSSKFSDLQWSPNGKY-IAASTLDGQILVWNVDTHE-------------------RH  267 (933)
T ss_pred             EEccCC------ceeheeecccccccceEEEEEcCCCcE-EeeeccCCcEEEEecccch-------------------hc
Confidence            999988      777666643  3445899999999998 6899999999999998710                   02


Q ss_pred             CCCcceeeEEEccCCCeEEE
Q 021657          241 GHRDKVVDFHWNASDPWTVV  260 (309)
Q Consensus       241 ~~~~~v~~~~~~~~~~~~~~  260 (309)
                      .....|++++|.|+.+.+-+
T Consensus       268 ~~~~~Vc~~aw~p~~n~it~  287 (933)
T KOG1274|consen  268 EFKRAVCCEAWKPNANAITL  287 (933)
T ss_pred             cccceeEEEecCCCCCeeEE
Confidence            23457999999998875443

>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]

Probab=99.85  E-value=9.7e-20  Score=143.26  Aligned_cols=226  Identities=14%  Similarity=0.267  Sum_probs=153.0

Q ss_pred             CCCCcceEEEEECCCCCEEEEecCCCcEEEEeCCccccccccCCccccccCCC---------CceeecCCCCCCCCcccC
Q 021657            6 GHQDNAEFALAMCPTEPYVLSGGKDKSVVLWSIQDHITSSATDPATAKSAGSS---------GSIIKQSPKPGDGNDKAA   76 (309)
Q Consensus         6 ~H~~~~V~~~~~~~~~~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~   76 (309)
                      .|.. .|.|+.|+.+...+.+++.+-.+.-||+.+........+.........         .....+...++++.+.+.
T Consensus        12 r~~e-~vc~v~w~~~eei~~~~dDh~~~~~~~~~~~s~~~~~~p~df~pt~~h~~~rs~~~g~~~d~~~i~s~DGkf~il   90 (737)
T KOG1524|consen   12 RNSE-KVCCVDWSSNEEIYFVSDDHQIFKWSDVSRDSVEVAKLPDDFVPTDMHLGGRSSGGGKGSDTLLICSNDGRFVIL   90 (737)
T ss_pred             ccce-eEEeecccccceEEEeccCceEEEeecccchhhhhhhCCcccCCccccccccccCCCCCcceEEEEcCCceEEEe
Confidence            4666 688999998887777777666666666655432222222221111111         000111111222222222


Q ss_pred             CCCCcCcccccccccCCeEEEEEecCCCcEEEEEcCCCeEEEEEcCCCCcceEEEeeccCCceeEEEeccCCCCeEEEEc
Q 021657           77 DGPSVGPRGIYNGHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGS  156 (309)
Q Consensus        77 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~  156 (309)
                      . ..++....+..|.+.+.+-.|+|+| .-|+++++||.|++|.- ++.  ....+.....+|+|++|.|++.+.+++.+
T Consensus        91 ~-k~~rVE~sv~AH~~A~~~gRW~~dG-tgLlt~GEDG~iKiWSr-sGM--LRStl~Q~~~~v~c~~W~p~S~~vl~c~g  165 (737)
T KOG1524|consen   91 N-KSARVERSISAHAAAISSGRWSPDG-AGLLTAGEDGVIKIWSR-SGM--LRSTVVQNEESIRCARWAPNSNSIVFCQG  165 (737)
T ss_pred             c-ccchhhhhhhhhhhhhhhcccCCCC-ceeeeecCCceEEEEec-cch--HHHHHhhcCceeEEEEECCCCCceEEecC
Confidence            1 2334456678899999999999999 77999999999999985 455  34445556789999999995555555543


Q ss_pred             CCCcEEEEecCCCCCCCCCCceeeeccCCCCeeEEEEecCCCcEEEEecCCCcEEEEeCCcccccccCCCCCcCCCCcee
Q 021657          157 ADNSVRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLF  236 (309)
Q Consensus       157 ~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~  236 (309)
                        +.+.|=-+..      ...+...+.|.+-|.++.|++... ++++|++|-..+|||-..                +.+
T Consensus       166 --~h~~IKpL~~------n~k~i~WkAHDGiiL~~~W~~~s~-lI~sgGED~kfKvWD~~G----------------~~L  220 (737)
T KOG1524|consen  166 --GHISIKPLAA------NSKIIRWRAHDGLVLSLSWSTQSN-IIASGGEDFRFKIWDAQG----------------ANL  220 (737)
T ss_pred             --CeEEEeeccc------ccceeEEeccCcEEEEeecCcccc-ceeecCCceeEEeecccC----------------ccc
Confidence              4566655655      556677889999999999999998 678999999999999764                456


Q ss_pred             eeecCCCcceeeEEEccCCCeEEEEecC
Q 021657          237 FQHAGHRDKVVDFHWNASDPWTVVSVSD  264 (309)
Q Consensus       237 ~~~~~~~~~v~~~~~~~~~~~~~~s~s~  264 (309)
                      +....|..+|++++|+|+.  +++.+|.
T Consensus       221 f~S~~~ey~ITSva~npd~--~~~v~S~  246 (737)
T KOG1524|consen  221 FTSAAEEYAITSVAFNPEK--DYLLWSY  246 (737)
T ss_pred             ccCChhccceeeeeecccc--ceeeeee
Confidence            7778899999999999973  4444443

>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]

Probab=99.85  E-value=1.7e-19  Score=133.58  Aligned_cols=221  Identities=20%  Similarity=0.341  Sum_probs=161.4

Q ss_pred             ccCCCCCcceEEEEECC----C-CCEEEEecCCCcEEEEeCCccccccccCCccccccCCCCceeecCCCCCCCCcccCC
Q 021657            3 ILTGHQDNAEFALAMCP----T-EPYVLSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAAD   77 (309)
Q Consensus         3 ~l~~H~~~~V~~~~~~~----~-~~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   77 (309)
                      ...+|+. +|..++|++    + -..++|.+. ..+.+|........                                 
T Consensus        33 l~ed~~~-~I~gv~fN~~~~~~e~~vfatvG~-~rvtiy~c~~d~~i---------------------------------   77 (385)
T KOG1034|consen   33 LKEDHNK-PIFGVAFNSFLGCDEPQVFATVGG-NRVTIYECPGDGGI---------------------------------   77 (385)
T ss_pred             hhccCCC-ccceeeeehhcCCCCCceEEEeCC-cEEEEEEECCccce---------------------------------
Confidence            4567877 899999985    2 245666665 47888887642100                                 


Q ss_pred             CCCcCccccc--ccccCCeEEEEEecC---CCcEEEEEcCCCeEEEEEcCCCCcceEEEeeccCCceeEEEeccCCCCeE
Q 021657           78 GPSVGPRGIY--NGHEDTVEDVTFCPS---SAQEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLI  152 (309)
Q Consensus        78 ~~~~~~~~~~--~~~~~~v~~~~~~~~---~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l  152 (309)
                          +.++..  ..|......++|+-+   +.-++|.|+.-|.|+|.|+.+++  ....+.+|...|+.+.++|...+++
T Consensus        78 ----r~lq~y~D~d~~Esfytcsw~yd~~~~~p~la~~G~~GvIrVid~~~~~--~~~~~~ghG~sINeik~~p~~~qlv  151 (385)
T KOG1034|consen   78 ----RLLQSYADEDHDESFYTCSWSYDSNTGNPFLAAGGYLGVIRVIDVVSGQ--CSKNYRGHGGSINEIKFHPDRPQLV  151 (385)
T ss_pred             ----eeeeeccCCCCCcceEEEEEEecCCCCCeeEEeecceeEEEEEecchhh--hccceeccCccchhhhcCCCCCcEE
Confidence                011111  136667778888643   34678999999999999999988  7888999999999999999888999


Q ss_pred             EEEcCCCcEEEEecCCCCCCCCCCceeee---ccCCCCeeEEEEecCCCcEEEEecCCCcEEEEeCCcc--cccccCC--
Q 021657          153 LTGSADNSVRMFDRRNLTSNGVGSPINKF---EGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKV--GKKVEQG--  225 (309)
Q Consensus       153 ~~~~~dg~i~i~d~~~~~~~~~~~~~~~~---~~~~~~v~~~~~~~~~~~l~~~~~~dg~i~iwd~~~~--~~~~~~~--  225 (309)
                      ++++.|..||+|++++      ..++..|   .+|...|.++.|+++|.+ +++++.|.++++|++...  ...++..  
T Consensus       152 ls~SkD~svRlwnI~~------~~Cv~VfGG~egHrdeVLSvD~~~~gd~-i~ScGmDhslk~W~l~~~~f~~~lE~s~~  224 (385)
T KOG1034|consen  152 LSASKDHSVRLWNIQT------DVCVAVFGGVEGHRDEVLSVDFSLDGDR-IASCGMDHSLKLWRLNVKEFKNKLELSIT  224 (385)
T ss_pred             EEecCCceEEEEeccC------CeEEEEecccccccCcEEEEEEcCCCCe-eeccCCcceEEEEecChhHHhhhhhhhcc
Confidence            9999999999999999      7888777   568999999999999997 679999999999999842  2111111  


Q ss_pred             --CCCc--CCC--Cc--e-eeeecCCCcceeeEEEccCCCeEEEEecCCCCCCCCCCeEEEEEcc
Q 021657          226 --PRTT--NYP--AG--L-FFQHAGHRDKVVDFHWNASDPWTVVSVSDDCDSTGGGGTLQIWRMS  281 (309)
Q Consensus       226 --~~~~--~~~--~~--~-~~~~~~~~~~v~~~~~~~~~~~~~~s~s~d~~s~~~dg~v~vw~~~  281 (309)
                        +...  +.|  ..  + +.+-.-|..+|-++.|-  +++++        |-+.++.|..|..-
T Consensus       225 ~~~~~t~~pfpt~~~~fp~fst~diHrnyVDCvrw~--gd~il--------SkscenaI~~w~pg  279 (385)
T KOG1034|consen  225 YSPNKTTRPFPTPKTHFPDFSTTDIHRNYVDCVRWF--GDFIL--------SKSCENAIVCWKPG  279 (385)
T ss_pred             cCCCCccCcCCccccccccccccccccchHHHHHHH--hhhee--------ecccCceEEEEecc
Confidence              0000  011  11  1 12445688899999887  45555        55666899999983

>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]

Probab=99.84  E-value=6.4e-20  Score=145.88  Aligned_cols=207  Identities=19%  Similarity=0.326  Sum_probs=164.2

Q ss_pred             CCCCcceEEEEECCCCCEEEEecCC---CcEEEEeCCccccccccCCccccccCCCCceeecCCCCCCCCcccCCCCCcC
Q 021657            6 GHQDNAEFALAMCPTEPYVLSGGKD---KSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVG   82 (309)
Q Consensus         6 ~H~~~~V~~~~~~~~~~~l~t~~~d---g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   82 (309)
                      .|.. .|..+.|+..|.||+|...+   ..|.|.++.....                                       
T Consensus       519 ~~~k-~i~~vtWHrkGDYlatV~~~~~~~~VliHQLSK~~s---------------------------------------  558 (733)
T KOG0650|consen  519 KHPK-SIRQVTWHRKGDYLATVMPDSGNKSVLIHQLSKRKS---------------------------------------  558 (733)
T ss_pred             ecCC-ccceeeeecCCceEEEeccCCCcceEEEEecccccc---------------------------------------
Confidence            4666 79999999999999987653   5688888874321                                       


Q ss_pred             cccccccccCCeEEEEEecCCCcEEEEEcCCCeEEEEEcCCCCcceEEEeeccCCceeEEEeccCCCCeEEEEcCCCcEE
Q 021657           83 PRGIYNGHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVR  162 (309)
Q Consensus        83 ~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~  162 (309)
                       ...|....+.|.++.|+|.. .+|+.++. ..|+|||+..+.  .++.+......|.+|+.+| .|.-|+.|+.|+.+.
T Consensus       559 -Q~PF~kskG~vq~v~FHPs~-p~lfVaTq-~~vRiYdL~kqe--lvKkL~tg~kwiS~msihp-~GDnli~gs~d~k~~  632 (733)
T KOG0650|consen  559 -QSPFRKSKGLVQRVKFHPSK-PYLFVATQ-RSVRIYDLSKQE--LVKKLLTGSKWISSMSIHP-NGDNLILGSYDKKMC  632 (733)
T ss_pred             -cCchhhcCCceeEEEecCCC-ceEEEEec-cceEEEehhHHH--HHHHHhcCCeeeeeeeecC-CCCeEEEecCCCeeE
Confidence             22344456789999999998 45555544 579999998766  5666666677899999999 999999999999999


Q ss_pred             EEecCCCCCCCCCCceeeeccCCCCeeEEEEecCCCcEEEEecCCCcEEEEeCCcccccccCCCCCcCCCCceeeeecCC
Q 021657          163 MFDRRNLTSNGVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGH  242 (309)
Q Consensus       163 i~d~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~  242 (309)
                      .||+.-.     .++.+++..|...+++++|++.-. ||++|+.||.+.||--.-.....+      +...-++..+.+|
T Consensus       633 WfDldls-----skPyk~lr~H~~avr~Va~H~ryP-Lfas~sdDgtv~Vfhg~VY~Dl~q------npliVPlK~L~gH  700 (733)
T KOG0650|consen  633 WFDLDLS-----SKPYKTLRLHEKAVRSVAFHKRYP-LFASGSDDGTVIVFHGMVYNDLLQ------NPLIVPLKRLRGH  700 (733)
T ss_pred             EEEcccC-----cchhHHhhhhhhhhhhhhhccccc-eeeeecCCCcEEEEeeeeehhhhc------CCceEeeeeccCc
Confidence            9999864     578889999999999999999888 799999999999986544332222      1223456677888


Q ss_pred             Ccc----eeeEEEccCCCeEEEEecCCCCCCCCCCeEEEE
Q 021657          243 RDK----VVDFHWNASDPWTVVSVSDDCDSTGGGGTLQIW  278 (309)
Q Consensus       243 ~~~----v~~~~~~~~~~~~~~s~s~d~~s~~~dg~v~vw  278 (309)
                      ...    |..+.|+|..++|+        |+|.||+|++|
T Consensus       701 ~~~~~~gVLd~~wHP~qpWLf--------sAGAd~tirlf  732 (733)
T KOG0650|consen  701 EKTNDLGVLDTIWHPRQPWLF--------SAGADGTIRLF  732 (733)
T ss_pred             eeecccceEeecccCCCceEE--------ecCCCceEEee
Confidence            765    99999999999999        88888999998

>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]

Probab=99.84  E-value=1.1e-18  Score=147.57  Aligned_cols=264  Identities=17%  Similarity=0.227  Sum_probs=178.6

Q ss_pred             ceEEEEECCCCCEEEEecCCCcEEEEeCCccccccccCCccccccCC-------CCceeecCCCCCCCCcccCCCCCcC-
Q 021657           11 AEFALAMCPTEPYVLSGGKDKSVVLWSIQDHITSSATDPATAKSAGS-------SGSIIKQSPKPGDGNDKAADGPSVG-   82 (309)
Q Consensus        11 ~V~~~~~~~~~~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~-   82 (309)
                      +-..+.|+|-...++++...-.|+|||.+.+.....+..........       .........+..++.+++|+..... 
T Consensus      1066 ~pk~~~~hpf~p~i~~ad~r~~i~vwd~e~~~~l~~F~n~~~~~t~Vs~l~liNe~D~aLlLtas~dGvIRIwk~y~~~~ 1145 (1387)
T KOG1517|consen 1066 PPKTLKFHPFEPQIAAADDRERIRVWDWEKGRLLNGFDNGAFPDTRVSDLELINEQDDALLLTASSDGVIRIWKDYADKW 1145 (1387)
T ss_pred             CCceeeecCCCceeEEcCCcceEEEEecccCceeccccCCCCCCCccceeeeecccchhheeeeccCceEEEeccccccc
Confidence            44678999999999999988899999999886666555544332211       1222234445678889998754331 


Q ss_pred             ----cccccc-------cccCCeEEEEEecCCCcEEEEEcCCCeEEEEEcCCCCcceEEE-eeccCCceeEEEeccCCCC
Q 021657           83 ----PRGIYN-------GHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPVIKV-EKAHDADLHCVDWNPLDDN  150 (309)
Q Consensus        83 ----~~~~~~-------~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~-~~~~~~~v~~~~~~~~~~~  150 (309)
                          .+..+.       +-.+.-.-+.|.... .+|+++|+-..|+|||.....  .... ..+....|+++.-+-..++
T Consensus      1146 ~~~eLVTaw~~Ls~~~~~~r~~~~v~dWqQ~~-G~Ll~tGd~r~IRIWDa~~E~--~~~diP~~s~t~vTaLS~~~~~gn 1222 (1387)
T KOG1517|consen 1146 KKPELVTAWSSLSDQLPGARGTGLVVDWQQQS-GHLLVTGDVRSIRIWDAHKEQ--VVADIPYGSSTLVTALSADLVHGN 1222 (1387)
T ss_pred             CCceeEEeeccccccCccCCCCCeeeehhhhC-CeEEecCCeeEEEEEecccce--eEeecccCCCccceeecccccCCc
Confidence                121111       111111335677666 345555668899999997666  3333 3345567888876654789


Q ss_pred             eEEEEcCCCcEEEEecCCCCCCCCCCceeeeccCCCC--eeEEEEecCCCcEEEEecCCCcEEEEeCCcccccccCCCCC
Q 021657          151 LILTGSADNSVRMFDRRNLTSNGVGSPINKFEGHSAA--VLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRT  228 (309)
Q Consensus       151 ~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~--v~~~~~~~~~~~l~~~~~~dg~i~iwd~~~~~~~~~~~~~~  228 (309)
                      .+++|..||.|++||.|....   ...+...+.|...  |..+.+.+.|-.-+++|+.||.|++||++.. ...      
T Consensus      1223 ~i~AGfaDGsvRvyD~R~a~~---ds~v~~~R~h~~~~~Iv~~slq~~G~~elvSgs~~G~I~~~DlR~~-~~e------ 1292 (1387)
T KOG1517|consen 1223 IIAAGFADGSVRVYDRRMAPP---DSLVCVYREHNDVEPIVHLSLQRQGLGELVSGSQDGDIQLLDLRMS-SKE------ 1292 (1387)
T ss_pred             eEEEeecCCceEEeecccCCc---cccceeecccCCcccceeEEeecCCCcceeeeccCCeEEEEecccC-ccc------
Confidence            999999999999999998543   3467777778776  9999999877654679999999999999983 111      


Q ss_pred             cCCCCceeeeecCCC---cceeeEEEccCCCeEEEEecCCCCCCCCCCeEEEEEccccccCChhhHhHhhhc-------c
Q 021657          229 TNYPAGLFFQHAGHR---DKVVDFHWNASDPWTVVSVSDDCDSTGGGGTLQIWRMSDLIYRPQDEVLAELEK-------F  298 (309)
Q Consensus       229 ~~~~~~~~~~~~~~~---~~v~~~~~~~~~~~~~~s~s~d~~s~~~dg~v~vw~~~~~~~~~~~~~~~~~~~-------h  298 (309)
                            .......|.   +.++++..+++.+.++        +|+. +.|+||++.       ++.+..++.       -
T Consensus      1293 ------~~~~iv~~~~yGs~lTal~VH~hapiiA--------sGs~-q~ikIy~~~-------G~~l~~~k~n~~F~~q~ 1350 (1387)
T KOG1517|consen 1293 ------TFLTIVAHWEYGSALTALTVHEHAPIIA--------SGSA-QLIKIYSLS-------GEQLNIIKYNPGFMGQR 1350 (1387)
T ss_pred             ------ccceeeeccccCccceeeeeccCCCeee--------ecCc-ceEEEEecC-------hhhhcccccCcccccCc
Confidence                  112222222   3589999999887544        5555 899999997       444444332       2


Q ss_pred             cceEEEeeeCC
Q 021657          299 KAHVISCTSKP  309 (309)
Q Consensus       299 ~~~v~~~~~~P  309 (309)
                      .+.+.+++|||
T Consensus      1351 ~gs~scL~FHP 1361 (1387)
T KOG1517|consen 1351 IGSVSCLAFHP 1361 (1387)
T ss_pred             CCCcceeeecc
Confidence            35789999998

>PRK01742 tolB translocation protein TolB; Provisional

Probab=99.84  E-value=2.8e-19  Score=147.51  Aligned_cols=223  Identities=14%  Similarity=0.145  Sum_probs=143.9

Q ss_pred             cccCCCCCcceEEEEECCCCCEEEEecCC---CcEEEEeCCccccccccCCccccccCCCCceeecCCCCCCCCcccCCC
Q 021657            2 EILTGHQDNAEFALAMCPTEPYVLSGGKD---KSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADG   78 (309)
Q Consensus         2 ~~l~~H~~~~V~~~~~~~~~~~l~t~~~d---g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   78 (309)
                      +.+..|.. .|...+|+|||+.|+..+.+   ..|++||+.++..                                   
T Consensus       197 ~~lt~~~~-~v~~p~wSPDG~~la~~s~~~~~~~i~i~dl~tg~~-----------------------------------  240 (429)
T PRK01742        197 FIVNRSSQ-PLMSPAWSPDGSKLAYVSFENKKSQLVVHDLRSGAR-----------------------------------  240 (429)
T ss_pred             eEeccCCC-ccccceEcCCCCEEEEEEecCCCcEEEEEeCCCCce-----------------------------------
Confidence            34566776 78999999999999887654   3699999875311                                   


Q ss_pred             CCcCcccccccccCCeEEEEEecCCCcEEEEEcCCCeEEEE--EcCCCCcceEEEeeccCCceeEEEeccCCCCeEEEE-
Q 021657           79 PSVGPRGIYNGHEDTVEDVTFCPSSAQEFCSVGDDSCLILW--DARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTG-  155 (309)
Q Consensus        79 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iw--d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~-  155 (309)
                         +.+..+.+|   ...++|+|+|..++++.+.+|.+.||  |+.+++   ...+..+...+....|+| +++.|+.. 
T Consensus       241 ---~~l~~~~g~---~~~~~wSPDG~~La~~~~~~g~~~Iy~~d~~~~~---~~~lt~~~~~~~~~~wSp-DG~~i~f~s  310 (429)
T PRK01742        241 ---KVVASFRGH---NGAPAFSPDGSRLAFASSKDGVLNIYVMGANGGT---PSQLTSGAGNNTEPSWSP-DGQSILFTS  310 (429)
T ss_pred             ---EEEecCCCc---cCceeECCCCCEEEEEEecCCcEEEEEEECCCCC---eEeeccCCCCcCCEEECC-CCCEEEEEE
Confidence               111222233   33579999994444445578876655  555544   344455667788999999 88866654 


Q ss_pred             cCCCcEEEEecCCCCCCCCCCceeeeccCCCCeeEEEEecCCCcEEEEecCCCcEEEEeCCcccccccCCCCCcCCCCce
Q 021657          156 SADNSVRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGL  235 (309)
Q Consensus       156 ~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~  235 (309)
                      ..+|...+|++...     +.....+ .+..  ...+|+|+|++++ ..+.++ +.+||+... +..            .
T Consensus       311 ~~~g~~~I~~~~~~-----~~~~~~l-~~~~--~~~~~SpDG~~ia-~~~~~~-i~~~Dl~~g-~~~------------~  367 (429)
T PRK01742        311 DRSGSPQVYRMSAS-----GGGASLV-GGRG--YSAQISADGKTLV-MINGDN-VVKQDLTSG-STE------------V  367 (429)
T ss_pred             CCCCCceEEEEECC-----CCCeEEe-cCCC--CCccCCCCCCEEE-EEcCCC-EEEEECCCC-CeE------------E
Confidence            46788889987652     2222223 2333  4578999999754 455454 566898762 110            0


Q ss_pred             eeeecCCCcceeeEEEccCCCeEEEEecCCCCCCCCCCeEEEEEccccccCChhhHhHhhhcccceEEEeeeCC
Q 021657          236 FFQHAGHRDKVVDFHWNASDPWTVVSVSDDCDSTGGGGTLQIWRMSDLIYRPQDEVLAELEKFKAHVISCTSKP  309 (309)
Q Consensus       236 ~~~~~~~~~~v~~~~~~~~~~~~~~s~s~d~~s~~~dg~v~vw~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~P  309 (309)
                      +  ...+  ....+.|+|++..++.+. .       ++...+|.+...    .+..++.+..|.+.+...+|+|
T Consensus       368 l--t~~~--~~~~~~~sPdG~~i~~~s-~-------~g~~~~l~~~~~----~G~~~~~l~~~~g~~~~p~wsp  425 (429)
T PRK01742        368 L--SSTF--LDESPSISPNGIMIIYSS-T-------QGLGKVLQLVSA----DGRFKARLPGSDGQVKFPAWSP  425 (429)
T ss_pred             e--cCCC--CCCCceECCCCCEEEEEE-c-------CCCceEEEEEEC----CCCceEEccCCCCCCCCcccCC
Confidence            1  0111  234678999988766433 2       367777776421    4667788888888899999998

>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]

Probab=99.83  E-value=1.8e-19  Score=136.82  Aligned_cols=250  Identities=16%  Similarity=0.268  Sum_probs=167.2

Q ss_pred             cccCCCCCcceEEEEECCCCCEEEEecCCCcEEEEeCCccccccccCCccccccCCCCceeecCCCCCCCCcccCCCCCc
Q 021657            2 EILTGHQDNAEFALAMCPTEPYVLSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSV   81 (309)
Q Consensus         2 ~~l~~H~~~~V~~~~~~~~~~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (309)
                      ..|..|+. +|+++.|+|+|++||+|+.+|.|.+|....- ...  ..                    +. -.-.+.+..
T Consensus        59 s~Ls~H~~-aVN~vRf~p~gelLASg~D~g~v~lWk~~~~-~~~--~~--------------------d~-e~~~~ke~w  113 (434)
T KOG1009|consen   59 SSLSRHTR-AVNVVRFSPDGELLASGGDGGEVFLWKQGDV-RIF--DA--------------------DT-EADLNKEKW  113 (434)
T ss_pred             ecccCCcc-eeEEEEEcCCcCeeeecCCCceEEEEEecCc-CCc--cc--------------------cc-hhhhCccce
Confidence            46888999 9999999999999999999999999987631 000  00                    00 000001123


Q ss_pred             CcccccccccCCeEEEEEecCCCcEEEEEcCCCeEEEEEcCCCCcceEEEeeccCCceeEEEeccCCCCeEEEEcCCCcE
Q 021657           82 GPRGIYNGHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSV  161 (309)
Q Consensus        82 ~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i  161 (309)
                      ...+.+.+|...|..++|+|++ .++++++.|..+++||+..+.  ....+..|...+..++|.| ..+++++-+.|...
T Consensus       114 ~v~k~lr~h~~diydL~Ws~d~-~~l~s~s~dns~~l~Dv~~G~--l~~~~~dh~~yvqgvawDp-l~qyv~s~s~dr~~  189 (434)
T KOG1009|consen  114 VVKKVLRGHRDDIYDLAWSPDS-NFLVSGSVDNSVRLWDVHAGQ--LLAILDDHEHYVQGVAWDP-LNQYVASKSSDRHP  189 (434)
T ss_pred             EEEEEecccccchhhhhccCCC-ceeeeeeccceEEEEEeccce--eEeeccccccccceeecch-hhhhhhhhccCccc
Confidence            3456678899999999999999 899999999999999999999  7888899999999999999 89999999999877


Q ss_pred             EEEecCCCCCC---------------CCCCceeeec--cCCCCeeEEEEecCCCcEEEEecC----C-----CcEEEEeC
Q 021657          162 RMFDRRNLTSN---------------GVGSPINKFE--GHSAAVLCVQWSPDKSSVFGSSAE----D-----GLLNIWDY  215 (309)
Q Consensus       162 ~i~d~~~~~~~---------------~~~~~~~~~~--~~~~~v~~~~~~~~~~~l~~~~~~----d-----g~i~iwd~  215 (309)
                      +.+++...+..               ..++..+-+.  ..+.....++|+|+|.. +++...    .     +..++|+-
T Consensus       190 ~~~~~~~~~~~~~~~~~~m~~~~~~~~e~~s~rLfhDeTlksFFrRlsfTPdG~l-lvtPag~~~~g~~~~~n~tYvfsr  268 (434)
T KOG1009|consen  190 EGFSAKLKQVIKRHGLDIMPAKAFNEREGKSTRLFHDETLKSFFRRLSFTPDGSL-LVTPAGLFKVGGGVFRNTSYVFSR  268 (434)
T ss_pred             ceeeeeeeeeeeeeeeeEeeecccCCCCcceeeeeecCchhhhhhhcccCCCCcE-EEcccceeeeCCceeeceeEeecc
Confidence            77776542100               0011111110  11233567889999984 445431    1     22344443


Q ss_pred             CcccccccCCCCCcCCCCceeeeecCCCcceeeEEEccC-----------------CCeEEEEecCCCCCCCCCCeEEEE
Q 021657          216 EKVGKKVEQGPRTTNYPAGLFFQHAGHRDKVVDFHWNAS-----------------DPWTVVSVSDDCDSTGGGGTLQIW  278 (309)
Q Consensus       216 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~-----------------~~~~~~s~s~d~~s~~~dg~v~vw  278 (309)
                      +..              .+++..+.+...+...+.++|-                 ...+++.+..        +.|+||
T Consensus       269 k~l--------------~rP~~~lp~~~k~~lavr~~pVy~elrp~~~~~~~~~lpyrlvfaiAt~--------~svyvy  326 (434)
T KOG1009|consen  269 KDL--------------KRPAARLPSPKKPALAVRFSPVYYELRPLSSEKFLFVLPYRLVFAIATK--------NSVYVY  326 (434)
T ss_pred             ccc--------------cCceeecCCCCcceEEEEeeeeEEEeccccccccccccccceEEEEeec--------ceEEEe
Confidence            332              2233444444555555555541                 2234555555        489999


Q ss_pred             EccccccCChhhHhHhhh-cccceEEEeeeCC
Q 021657          279 RMSDLIYRPQDEVLAELE-KFKAHVISCTSKP  309 (309)
Q Consensus       279 ~~~~~~~~~~~~~~~~~~-~h~~~v~~~~~~P  309 (309)
                      |.+      ...++..+. -|-..|++++|++
T Consensus       327 dtq------~~~P~~~v~nihy~~iTDiaws~  352 (434)
T KOG1009|consen  327 DTQ------TLEPLAVVDNIHYSAITDIAWSD  352 (434)
T ss_pred             ccc------cccceEEEeeeeeeeecceeecC
Confidence            999      666665554 3667889999875

>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]

Probab=99.83  E-value=1.8e-18  Score=139.82  Aligned_cols=217  Identities=13%  Similarity=0.301  Sum_probs=158.9

Q ss_pred             ceEEEEECCCCCEEEEecCCCcEEEEeCCccccccccCCccccccCCCCceeecCCCCCCCCcccCCCCCcCcccccccc
Q 021657           11 AEFALAMCPTEPYVLSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGH   90 (309)
Q Consensus        11 ~V~~~~~~~~~~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   90 (309)
                      .|+.++|-|||..|+.+.. ..+.+||..                                        .+..++.+++|
T Consensus        14 ci~d~afkPDGsqL~lAAg-~rlliyD~n----------------------------------------dG~llqtLKgH   52 (1081)
T KOG1538|consen   14 CINDIAFKPDGTQLILAAG-SRLLVYDTS----------------------------------------DGTLLQPLKGH   52 (1081)
T ss_pred             chheeEECCCCceEEEecC-CEEEEEeCC----------------------------------------Ccccccccccc
Confidence            5899999999998887764 478899987                                        44567788999


Q ss_pred             cCCeEEEEEecCCCcEEEEEcCCCeEEEEEcCCCCcceEEEeeccCCce-------------------------------
Q 021657           91 EDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADL-------------------------------  139 (309)
Q Consensus        91 ~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v-------------------------------  139 (309)
                      ...|.+++|+.+| ..|++|+.|..|.+|+..-..  .  ....|.+.|                               
T Consensus        53 KDtVycVAys~dG-krFASG~aDK~VI~W~~klEG--~--LkYSH~D~IQCMsFNP~~h~LasCsLsdFglWS~~qK~V~  127 (1081)
T KOG1538|consen   53 KDTVYCVAYAKDG-KRFASGSADKSVIIWTSKLEG--I--LKYSHNDAIQCMSFNPITHQLASCSLSDFGLWSPEQKSVS  127 (1081)
T ss_pred             cceEEEEEEccCC-ceeccCCCceeEEEecccccc--e--eeeccCCeeeEeecCchHHHhhhcchhhccccChhhhhHH
Confidence            9999999999999 889999999999999854221  1  111334444                               


Q ss_pred             --------eEEEeccCCCCeEEEEcCCCcEEEEecCCCCCCCCCCceeeeccCCCCeeEEEEecCCC----cEEEEecCC
Q 021657          140 --------HCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWSPDKS----SVFGSSAED  207 (309)
Q Consensus       140 --------~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~----~l~~~~~~d  207 (309)
                              .+++|.. +|++|+.|-.+|+|.+-+-....    .-.+.+-.+.+.+|.+++|+|...    -++++...+
T Consensus       128 K~kss~R~~~CsWtn-DGqylalG~~nGTIsiRNk~gEe----k~~I~Rpgg~Nspiwsi~~~p~sg~G~~di~aV~DW~  202 (1081)
T KOG1538|consen  128 KHKSSSRIICCSWTN-DGQYLALGMFNGTISIRNKNGEE----KVKIERPGGSNSPIWSICWNPSSGEGRNDILAVADWG  202 (1081)
T ss_pred             hhhhheeEEEeeecC-CCcEEEEeccCceEEeecCCCCc----ceEEeCCCCCCCCceEEEecCCCCCCccceEEEEecc
Confidence                    4555555 89999999999999887543210    112333345678999999999642    256777778


Q ss_pred             CcEEEEeCCcccccccCCCCCcCCCCceeeeecCCCcceeeEEEccCCCeEEEEecCCCCCCCCCCeEEEEEccccccCC
Q 021657          208 GLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKVVDFHWNASDPWTVVSVSDDCDSTGGGGTLQIWRMSDLIYRP  287 (309)
Q Consensus       208 g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~s~d~~s~~~dg~v~vw~~~~~~~~~  287 (309)
                      .++.+|.+..                +.+..-..-.-...++.+.|+|.+++        .||.|+.+++|--.      
T Consensus       203 qTLSFy~LsG----------------~~Igk~r~L~FdP~CisYf~NGEy~L--------iGGsdk~L~~fTR~------  252 (1081)
T KOG1538|consen  203 QTLSFYQLSG----------------KQIGKDRALNFDPCCISYFTNGEYIL--------LGGSDKQLSLFTRD------  252 (1081)
T ss_pred             ceeEEEEecc----------------eeecccccCCCCchhheeccCCcEEE--------EccCCCceEEEeec------
Confidence            8888888764                12222223334457888999999998        67777999999775      


Q ss_pred             hhhHhHhhhcccceEEEeeeCC
Q 021657          288 QDEVLAELEKFKAHVISCTSKP  309 (309)
Q Consensus       288 ~~~~~~~~~~h~~~v~~~~~~P  309 (309)
                       +..+.++-.....|++++.+|
T Consensus       253 -GvrLGTvg~~D~WIWtV~~~P  273 (1081)
T KOG1538|consen  253 -GVRLGTVGEQDSWIWTVQAKP  273 (1081)
T ss_pred             -CeEEeeccccceeEEEEEEcc
Confidence             667777777778999999887

>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]

Probab=99.82  E-value=5.9e-19  Score=138.91  Aligned_cols=175  Identities=17%  Similarity=0.313  Sum_probs=140.5

Q ss_pred             ccCCCCCcceEEEEECCCCCEEEEecCCCcEEEEeCCccccccccCCccccccCCCCceeecCCCCCCCCcccCCCCCcC
Q 021657            3 ILTGHQDNAEFALAMCPTEPYVLSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVG   82 (309)
Q Consensus         3 ~l~~H~~~~V~~~~~~~~~~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   82 (309)
                      .+.+|.+ +|.+-.|+|||.-|+|+++||.|++|.-...                                         
T Consensus        99 sv~AH~~-A~~~gRW~~dGtgLlt~GEDG~iKiWSrsGM-----------------------------------------  136 (737)
T KOG1524|consen   99 SISAHAA-AISSGRWSPDGAGLLTAGEDGVIKIWSRSGM-----------------------------------------  136 (737)
T ss_pred             hhhhhhh-hhhhcccCCCCceeeeecCCceEEEEeccch-----------------------------------------
Confidence            4678999 8999999999999999999999999985422                                         


Q ss_pred             cccccccccCCeEEEEEecCCCcEEEEEcCCCeEEEEEcCCCCcceEEEeeccCCceeEEEeccCCCCeEEEEcCCCcEE
Q 021657           83 PRGIYNGHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVR  162 (309)
Q Consensus        83 ~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~  162 (309)
                      ...++.....+|.|++|.|+..+.+.+.+  +.+.|=.+....  .+...++|.+-|.++.|++ ..+++++|+.|-..+
T Consensus       137 LRStl~Q~~~~v~c~~W~p~S~~vl~c~g--~h~~IKpL~~n~--k~i~WkAHDGiiL~~~W~~-~s~lI~sgGED~kfK  211 (737)
T KOG1524|consen  137 LRSTVVQNEESIRCARWAPNSNSIVFCQG--GHISIKPLAANS--KIIRWRAHDGLVLSLSWST-QSNIIASGGEDFRFK  211 (737)
T ss_pred             HHHHHhhcCceeEEEEECCCCCceEEecC--CeEEEeeccccc--ceeEEeccCcEEEEeecCc-cccceeecCCceeEE
Confidence            22334456678999999999877676654  567776766555  4667789999999999999 899999999999999


Q ss_pred             EEecCCCCCCCCCCceeeeccCCCCeeEEEEecCCCcEEEEecCCCcEEEEeCCcccccccCCCCCcCCCCceeeeecCC
Q 021657          163 MFDRRNLTSNGVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGH  242 (309)
Q Consensus       163 i~d~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~  242 (309)
                      +||..       +.++.+-..|.-+|++++|+|+.  +++.++. ++++   +.+                       ..
T Consensus       212 vWD~~-------G~~Lf~S~~~ey~ITSva~npd~--~~~v~S~-nt~R---~~~-----------------------p~  255 (737)
T KOG1524|consen  212 IWDAQ-------GANLFTSAAEEYAITSVAFNPEK--DYLLWSY-NTAR---FSS-----------------------PR  255 (737)
T ss_pred             eeccc-------CcccccCChhccceeeeeecccc--ceeeeee-eeee---ecC-----------------------CC
Confidence            99977       78888888899999999999993  5666663 3444   121                       23


Q ss_pred             CcceeeEEEccCCCeEEE
Q 021657          243 RDKVVDFHWNASDPWTVV  260 (309)
Q Consensus       243 ~~~v~~~~~~~~~~~~~~  260 (309)
                      .+.|..++|++||..+.+
T Consensus       256 ~GSifnlsWS~DGTQ~a~  273 (737)
T KOG1524|consen  256 VGSIFNLSWSADGTQATC  273 (737)
T ss_pred             ccceEEEEEcCCCceeec
Confidence            467899999999998763

>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]

Probab=99.82  E-value=2.6e-18  Score=127.13  Aligned_cols=227  Identities=14%  Similarity=0.249  Sum_probs=159.6

Q ss_pred             cceEEEEEC-------CCCCEEEEecCCCcEEEEeCCccccccccCCcccc---------ccCCCCceeecCCCCCCCCc
Q 021657           10 NAEFALAMC-------PTEPYVLSGGKDKSVVLWSIQDHITSSATDPATAK---------SAGSSGSIIKQSPKPGDGND   73 (309)
Q Consensus        10 ~~V~~~~~~-------~~~~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~   73 (309)
                      ..|+..+|.       |+..++|+.+.|.-|++||.-++.....+..-...         .....+...+.   .....+
T Consensus       105 ~tvydy~wYs~M~s~qP~t~l~a~ssr~~PIh~wdaftG~lraSy~~ydh~de~taAhsL~Fs~DGeqlfa---Gykrci  181 (406)
T KOG2919|consen  105 ETVYDYCWYSRMKSDQPSTNLFAVSSRDQPIHLWDAFTGKLRASYRAYDHQDEYTAAHSLQFSPDGEQLFA---GYKRCI  181 (406)
T ss_pred             CEEEEEEeeeccccCCCccceeeeccccCceeeeeccccccccchhhhhhHHhhhhheeEEecCCCCeEee---cccceE
Confidence            357777775       56778888888999999998877554443322111         11111111111   123344


Q ss_pred             ccCCC-CCcCc--cccc-----ccccCCeEEEEEecCCCcEEEEEcCCCeEEEEEcCCCCcceEEEeeccCCceeEEEec
Q 021657           74 KAADG-PSVGP--RGIY-----NGHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWN  145 (309)
Q Consensus        74 ~~~~~-~~~~~--~~~~-----~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~  145 (309)
                      ++++. +.++.  +...     .+..+.|.+++|+|.....++.|+....+-||.-..+.  ....+.+|.+.|+.++|.
T Consensus       182 rvFdt~RpGr~c~vy~t~~~~k~gq~giisc~a~sP~~~~~~a~gsY~q~~giy~~~~~~--pl~llggh~gGvThL~~~  259 (406)
T KOG2919|consen  182 RVFDTSRPGRDCPVYTTVTKGKFGQKGIISCFAFSPMDSKTLAVGSYGQRVGIYNDDGRR--PLQLLGGHGGGVTHLQWC  259 (406)
T ss_pred             EEeeccCCCCCCcchhhhhcccccccceeeeeeccCCCCcceeeecccceeeeEecCCCC--ceeeecccCCCeeeEEec
Confidence            45544 22221  1111     23467899999999987799999999999999876666  677778999999999999


Q ss_pred             cCCCCeEEEEcC-CCcEEEEecCCCCCCCCCCceeeeccCCC-CeeEE--EEecCCCcEEEEecCCCcEEEEeCCccccc
Q 021657          146 PLDDNLILTGSA-DNSVRMFDRRNLTSNGVGSPINKFEGHSA-AVLCV--QWSPDKSSVFGSSAEDGLLNIWDYEKVGKK  221 (309)
Q Consensus       146 ~~~~~~l~~~~~-dg~i~i~d~~~~~~~~~~~~~~~~~~~~~-~v~~~--~~~~~~~~l~~~~~~dg~i~iwd~~~~~~~  221 (309)
                      + +|+.|++|+. |..|..||+|..     ..++..+..|.. .-..|  ...|++++ ||+|+.||.|++||++..+..
T Consensus       260 e-dGn~lfsGaRk~dkIl~WDiR~~-----~~pv~~L~rhv~~TNQRI~FDld~~~~~-LasG~tdG~V~vwdlk~~gn~  332 (406)
T KOG2919|consen  260 E-DGNKLFSGARKDDKILCWDIRYS-----RDPVYALERHVGDTNQRILFDLDPKGEI-LASGDTDGSVRVWDLKDLGNE  332 (406)
T ss_pred             c-CcCeecccccCCCeEEEEeehhc-----cchhhhhhhhccCccceEEEecCCCCce-eeccCCCccEEEEecCCCCCc
Confidence            9 9999999987 779999999985     667777876655 33334  45688995 789999999999999985442


Q ss_pred             ccCCCCCcCCCCceeeeecCCCcceeeEEEccCCCeEEEEec
Q 021657          222 VEQGPRTTNYPAGLFFQHAGHRDKVVDFHWNASDPWTVVSVS  263 (309)
Q Consensus       222 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~s  263 (309)
                                    ...+..|...++.++++|--+ +++++|
T Consensus       333 --------------~sv~~~~sd~vNgvslnP~mp-ilatss  359 (406)
T KOG2919|consen  333 --------------VSVTGNYSDTVNGVSLNPIMP-ILATSS  359 (406)
T ss_pred             --------------ccccccccccccceecCcccc-eeeecc
Confidence                          345567888999999999755 566554

>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]

Probab=99.81  E-value=1.2e-18  Score=137.76  Aligned_cols=176  Identities=19%  Similarity=0.377  Sum_probs=138.3

Q ss_pred             cccCCCCCcceEEEEECCCCCEEEEecCCCcEEEEeCCccccccccCCccccccCCCCceeecCCCCCCCCcccCCCCCc
Q 021657            2 EILTGHQDNAEFALAMCPTEPYVLSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSV   81 (309)
Q Consensus         2 ~~l~~H~~~~V~~~~~~~~~~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (309)
                      -+|++|.+ +|.|+++.+++..+.+|+-||+|+.|++....-...                            .++  ..
T Consensus       338 ~tfraH~g-PVl~v~v~~n~~~~ysgg~Dg~I~~w~~p~n~dp~d----------------------------s~d--p~  386 (577)
T KOG0642|consen  338 LTFRAHEG-PVLCVVVPSNGEHCYSGGIDGTIRCWNLPPNQDPDD----------------------------SYD--PS  386 (577)
T ss_pred             EEEecccC-ceEEEEecCCceEEEeeccCceeeeeccCCCCCccc----------------------------ccC--cc
Confidence            47899999 999999999999999999999999998762100000                            000  11


Q ss_pred             CcccccccccCCeEEEEEecCCCcEEEEEcCCCeEEEEEcCCCCc-----------c-----------------------
Q 021657           82 GPRGIYNGHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTS-----------P-----------------------  127 (309)
Q Consensus        82 ~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~-----------~-----------------------  127 (309)
                      .....+.||.+.|+.+++++.. ..|++++.||++++|+......           +                       
T Consensus       387 vl~~~l~Ghtdavw~l~~s~~~-~~Llscs~DgTvr~w~~~~~~~~~f~~~~e~g~Plsvd~~ss~~a~~~~s~~~~~~~  465 (577)
T KOG0642|consen  387 VLSGTLLGHTDAVWLLALSSTK-DRLLSCSSDGTVRLWEPTEESPCTFGEPKEHGYPLSVDRTSSRPAHSLASFRFGYTS  465 (577)
T ss_pred             hhccceeccccceeeeeecccc-cceeeecCCceEEeeccCCcCccccCCccccCCcceEeeccchhHhhhhhccccccc
Confidence            1234678999999999999987 6799999999999998753321           0                       


Q ss_pred             --------eEEEee-------ccCCceeEEEeccCCCCeEEEEcCCCcEEEEecCCCCCCCCCCceeeeccCCCCeeEEE
Q 021657          128 --------VIKVEK-------AHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQ  192 (309)
Q Consensus       128 --------~~~~~~-------~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~v~~~~  192 (309)
                              ....+.       .....+..+.++| +..+.+++..|+.|+++|..+      ++++.....|...+++++
T Consensus       466 ~~~~ev~s~~~~~~s~~~~~~~~~~~in~vVs~~-~~~~~~~~hed~~Ir~~dn~~------~~~l~s~~a~~~svtsla  538 (577)
T KOG0642|consen  466 IDDMEVVSDLLIFESSASPGPRRYPQINKVVSHP-TADITFTAHEDRSIRFFDNKT------GKILHSMVAHKDSVTSLA  538 (577)
T ss_pred             chhhhhhhheeeccccCCCcccccCccceEEecC-CCCeeEecccCCceecccccc------cccchheeeccceeccee
Confidence                    000000       0013456677788 789999999999999999999      999999999999999999


Q ss_pred             EecCCCcEEEEecCCCcEEEEeCCc
Q 021657          193 WSPDKSSVFGSSAEDGLLNIWDYEK  217 (309)
Q Consensus       193 ~~~~~~~l~~~~~~dg~i~iwd~~~  217 (309)
                      +.|+|.+ |++++.||.+++|.+..
T Consensus       539 i~~ng~~-l~s~s~d~sv~l~kld~  562 (577)
T KOG0642|consen  539 IDPNGPY-LMSGSHDGSVRLWKLDV  562 (577)
T ss_pred             ecCCCce-EEeecCCceeehhhccc
Confidence            9999997 56999999999999976

>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]

Probab=99.80  E-value=1.3e-17  Score=137.41  Aligned_cols=226  Identities=19%  Similarity=0.252  Sum_probs=159.3

Q ss_pred             CCCCCcceEEEEECCCC--CEEEEecCCCcEEEEeCCccccccccCCccccccCCCCceeecCCCCCCCCcccCCCCCcC
Q 021657            5 TGHQDNAEFALAMCPTE--PYVLSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVG   82 (309)
Q Consensus         5 ~~H~~~~V~~~~~~~~~--~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   82 (309)
                      -.|.. +|+.+.|-.+.  .-+++++.||.|..|+++............                            ...
T Consensus       288 ~sh~~-~v~~vvW~~~~~~~~f~s~ssDG~i~~W~~~~l~~P~e~~~~~----------------------------~~~  338 (555)
T KOG1587|consen  288 VSHSE-PVTAVVWLQNEHNTEFFSLSSDGSICSWDTDMLSLPVEGLLLE----------------------------SKK  338 (555)
T ss_pred             ccCCc-CeEEEEEeccCCCCceEEEecCCcEeeeeccccccchhhcccc----------------------------ccc
Confidence            35777 89999997654  449999999999999887432211111100                            000


Q ss_pred             cccccccccCCeEEEEEecCCCcEEEEEcCCCeEEEEEcCCCCcc------eEEEeeccCCceeEEEeccCCCCeEEEEc
Q 021657           83 PRGIYNGHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSP------VIKVEKAHDADLHCVDWNPLDDNLILTGS  156 (309)
Q Consensus        83 ~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~------~~~~~~~~~~~v~~~~~~~~~~~~l~~~~  156 (309)
                      ....-......+++++|.+..+..|+.|+++|.|.--+....+..      .......|.++|+++.++|.....|++++
T Consensus       339 ~~~~~~~~~~~~t~~~F~~~~p~~FiVGTe~G~v~~~~r~g~~~~~~~~~~~~~~~~~h~g~v~~v~~nPF~~k~fls~g  418 (555)
T KOG1587|consen  339 HKGQQSSKAVGATSLKFEPTDPNHFIVGTEEGKVYKGCRKGYTPAPEVSYKGHSTFITHIGPVYAVSRNPFYPKNFLSVG  418 (555)
T ss_pred             ccccccccccceeeEeeccCCCceEEEEcCCcEEEEEeccCCcccccccccccccccccCcceEeeecCCCccceeeeec
Confidence            000001123468899999998899999999999887443222211      13345678899999999996666666666


Q ss_pred             CCCcEEEEecC-CCCCCCCCCceeeeccCCCCeeEEEEecCCCcEEEEecCCCcEEEEeCCcccccccCCCCCcCCCCce
Q 021657          157 ADNSVRMFDRR-NLTSNGVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGL  235 (309)
Q Consensus       157 ~dg~i~i~d~~-~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~  235 (309)
                       |.+++||... .      ..++..+..+...+++++|||....+|+++..||.+.+||+.....             .+
T Consensus       419 -DW~vriWs~~~~------~~Pl~~~~~~~~~v~~vaWSptrpavF~~~d~~G~l~iWDLl~~~~-------------~P  478 (555)
T KOG1587|consen  419 -DWTVRIWSEDVI------ASPLLSLDSSPDYVTDVAWSPTRPAVFATVDGDGNLDIWDLLQDDE-------------EP  478 (555)
T ss_pred             -cceeEeccccCC------CCcchhhhhccceeeeeEEcCcCceEEEEEcCCCceehhhhhcccc-------------CC
Confidence             9999999988 5      6788888888888999999999999999999999999999987322             23


Q ss_pred             eeeecCCCcceeeEEEccCCCeEEEEecCCCCCCCCCCeEEEEEccccccCC
Q 021657          236 FFQHAGHRDKVVDFHWNASDPWTVVSVSDDCDSTGGGGTLQIWRMSDLIYRP  287 (309)
Q Consensus       236 ~~~~~~~~~~v~~~~~~~~~~~~~~s~s~d~~s~~~dg~v~vw~~~~~~~~~  287 (309)
                      +....-+....+.+.|++.+..+.        .|...|.+.+|++......+
T Consensus       479 v~s~~~~~~~l~~~~~s~~g~~la--------vGd~~G~~~~~~l~~~l~~~  522 (555)
T KOG1587|consen  479 VLSQKVCSPALTRVRWSPNGKLLA--------VGDANGTTHILKLSESLAVP  522 (555)
T ss_pred             cccccccccccceeecCCCCcEEE--------EecCCCcEEEEEcCchhhcc
Confidence            333444456677888888777544        45555999999997544333

>KOG0649 consensus WD40 repeat protein [General function prediction only]

Probab=99.80  E-value=3.4e-17  Score=116.70  Aligned_cols=208  Identities=18%  Similarity=0.253  Sum_probs=140.5

Q ss_pred             ccCCCCCcceEEEEECCCCCEEEEecCCCcEEEEeCCccccccccCCccccccCCCCceeecCCCCCCCCcccCCCCCcC
Q 021657            3 ILTGHQDNAEFALAMCPTEPYVLSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVG   82 (309)
Q Consensus         3 ~l~~H~~~~V~~~~~~~~~~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   82 (309)
                      ..++|.+ +|+.++|+  ..+|++|+ ||.|+=|............                         .+|+.....
T Consensus        57 ~eqahdg-piy~~~f~--d~~Lls~g-dG~V~gw~W~E~~es~~~K-------------------------~lwe~~~P~  107 (325)
T KOG0649|consen   57 PEQAHDG-PIYYLAFH--DDFLLSGG-DGLVYGWEWNEEEESLATK-------------------------RLWEVKIPM  107 (325)
T ss_pred             eccccCC-Ceeeeeee--hhheeecc-CceEEEeeehhhhhhccch-------------------------hhhhhcCcc
Confidence            3579999 99999998  45677776 5999999987643322111                         112111111


Q ss_pred             cccccccccCCeEEEEEecCCCcEEEEEcCCCeEEEEEcCCCCcceEEEeeccCCceeEEEeccCCCCeEEEEcCCCcEE
Q 021657           83 PRGIYNGHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVR  162 (309)
Q Consensus        83 ~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~  162 (309)
                      ...  ...-..|++|-..|..+. ++.++.|+.++-||+++++  +...+.+|.+.|.++.-.. ....+++|+.||++|
T Consensus       108 ~~~--~~evPeINam~ldP~enS-i~~AgGD~~~y~~dlE~G~--i~r~~rGHtDYvH~vv~R~-~~~qilsG~EDGtvR  181 (325)
T KOG0649|consen  108 QVD--AVEVPEINAMWLDPSENS-ILFAGGDGVIYQVDLEDGR--IQREYRGHTDYVHSVVGRN-ANGQILSGAEDGTVR  181 (325)
T ss_pred             ccC--cccCCccceeEeccCCCc-EEEecCCeEEEEEEecCCE--EEEEEcCCcceeeeeeecc-cCcceeecCCCccEE
Confidence            110  011246899999988745 5555689999999999999  8899999999999999865 667899999999999


Q ss_pred             EEecCCCCCCCCCCceeeeccC----------CCCeeEEEEecCCCcEEEEecCCCcEEEEeCCcccccccCCCCCcCCC
Q 021657          163 MFDRRNLTSNGVGSPINKFEGH----------SAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYP  232 (309)
Q Consensus       163 i~d~~~~~~~~~~~~~~~~~~~----------~~~v~~~~~~~~~~~l~~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~  232 (309)
                      +||.++      .+.+..+..-          ...|-+++.  +..++  .++....+.+|.++...             
T Consensus       182 vWd~kt------~k~v~~ie~yk~~~~lRp~~g~wigala~--~edWl--vCGgGp~lslwhLrsse-------------  238 (325)
T KOG0649|consen  182 VWDTKT------QKHVSMIEPYKNPNLLRPDWGKWIGALAV--NEDWL--VCGGGPKLSLWHLRSSE-------------  238 (325)
T ss_pred             EEeccc------cceeEEeccccChhhcCcccCceeEEEec--cCceE--EecCCCceeEEeccCCC-------------
Confidence            999999      6666666432          223545554  44554  34446789999999822             


Q ss_pred             CceeeeecCCCcceeeEEEccCCCeEEEEecCCCCCCCCCCeEEEEEcc
Q 021657          233 AGLFFQHAGHRDKVVDFHWNASDPWTVVSVSDDCDSTGGGGTLQIWRMS  281 (309)
Q Consensus       233 ~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~s~d~~s~~~dg~v~vw~~~  281 (309)
                      ..+++.+.+   ++..+.|..  ..++        ++|..+.|.-|.+.
T Consensus       239 ~t~vfpipa---~v~~v~F~~--d~vl--------~~G~g~~v~~~~l~  274 (325)
T KOG0649|consen  239 STCVFPIPA---RVHLVDFVD--DCVL--------IGGEGNHVQSYTLN  274 (325)
T ss_pred             ceEEEeccc---ceeEeeeec--ceEE--------Eeccccceeeeeec
Confidence            223444444   456667764  2334        34444788888876

>COG2319 FOG: WD40 repeat [General function prediction only]

Probab=99.80  E-value=1.7e-16  Score=131.94  Aligned_cols=208  Identities=28%  Similarity=0.572  Sum_probs=157.3

Q ss_pred             cccCCCCCcceEEEEECCCCCEEEEecC-CCcEEEEeCCccccccccCCccccccCCCCceeecCCCCCCCCcccCCCCC
Q 021657            2 EILTGHQDNAEFALAMCPTEPYVLSGGK-DKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPS   80 (309)
Q Consensus         2 ~~l~~H~~~~V~~~~~~~~~~~l~t~~~-dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (309)
                      ..+.+|.. .|..++|+|++..+++++. |+.+++|++..                                        
T Consensus       149 ~~~~~~~~-~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------------------------------------  187 (466)
T COG2319         149 RTLEGHSE-SVTSLAFSPDGKLLASGSSLDGTIKLWDLRT----------------------------------------  187 (466)
T ss_pred             EEEecCcc-cEEEEEECCCCCEEEecCCCCCceEEEEcCC----------------------------------------
Confidence            35678888 8999999999999998886 99999999973                                        


Q ss_pred             cCcccccccccCCeEEEEEecCCCcEEEEEcCCCeEEEEEcCCCCcceEE-EeeccCCceeEEEeccCCCCeEEEEcCCC
Q 021657           81 VGPRGIYNGHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPVIK-VEKAHDADLHCVDWNPLDDNLILTGSADN  159 (309)
Q Consensus        81 ~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~-~~~~~~~~v~~~~~~~~~~~~l~~~~~dg  159 (309)
                      ...+..+.+|...|.+++|+|++...+++++.|+.|++||...+.  ... .+..|.... ...|+| ++..+++++.|+
T Consensus       188 ~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~~i~~wd~~~~~--~~~~~~~~~~~~~-~~~~~~-~~~~~~~~~~d~  263 (466)
T COG2319         188 GKPLSTLAGHTDPVSSLAFSPDGGLLIASGSSDGTIRLWDLSTGK--LLRSTLSGHSDSV-VSSFSP-DGSLLASGSSDG  263 (466)
T ss_pred             CceEEeeccCCCceEEEEEcCCcceEEEEecCCCcEEEEECCCCc--EEeeecCCCCcce-eEeECC-CCCEEEEecCCC
Confidence            233455666999999999999884356666999999999887555  444 577777775 448999 778888999999


Q ss_pred             cEEEEecCCCCCCCCCCc-eeeeccCCCCeeEEEEecCCCcEEEEecCCCcEEEEeCCcccccccCCCCCcCCCCceeee
Q 021657          160 SVRMFDRRNLTSNGVGSP-INKFEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQ  238 (309)
Q Consensus       160 ~i~i~d~~~~~~~~~~~~-~~~~~~~~~~v~~~~~~~~~~~l~~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~  238 (309)
                      .+++||++..      .. +..+..|...+.++.|.|++..++ +++.|+.+.+||+........             ..
T Consensus       264 ~~~~~~~~~~------~~~~~~~~~~~~~v~~~~~~~~~~~~~-~~~~d~~~~~~~~~~~~~~~~-------------~~  323 (466)
T COG2319         264 TIRLWDLRSS------SSLLRTLSGHSSSVLSVAFSPDGKLLA-SGSSDGTVRLWDLETGKLLSS-------------LT  323 (466)
T ss_pred             cEEEeeecCC------CcEEEEEecCCccEEEEEECCCCCEEE-EeeCCCcEEEEEcCCCceEEE-------------ee
Confidence            9999999973      32 444466788999999999888655 588888899998877222111             01


Q ss_pred             ecCCCcceeeEEEccCC-CeEEEEecCCCCCCCCCCeEEEEEccc
Q 021657          239 HAGHRDKVVDFHWNASD-PWTVVSVSDDCDSTGGGGTLQIWRMSD  282 (309)
Q Consensus       239 ~~~~~~~v~~~~~~~~~-~~~~~s~s~d~~s~~~dg~v~vw~~~~  282 (309)
                      ...|...+..+.| +.. ..++.++       ..|+.+.+|++..
T Consensus       324 ~~~~~~~~~~~~~-~~~~~~~~~~~-------~~d~~~~~~~~~~  360 (466)
T COG2319         324 LKGHEGPVSSLSF-SPDGSLLVSGG-------SDDGTIRLWDLRT  360 (466)
T ss_pred             ecccCCceEEEEE-CCCCCEEEEee-------cCCCcEEeeecCC
Confidence            2367778999999 433 4555432       3448999999984

>PRK03629 tolB translocation protein TolB; Provisional

Probab=99.79  E-value=9.4e-17  Score=132.30  Aligned_cols=224  Identities=12%  Similarity=0.086  Sum_probs=141.6

Q ss_pred             cCCCCCcceEEEEECCCCCEEEEec---CCCcEEEEeCCccccccccCCccccccCCCCceeecCCCCCCCCcccCCCCC
Q 021657            4 LTGHQDNAEFALAMCPTEPYVLSGG---KDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPS   80 (309)
Q Consensus         4 l~~H~~~~V~~~~~~~~~~~l~t~~---~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (309)
                      +..+.. .+.+.+|+|||+.|+..+   .+..|.+|++.++..                                     
T Consensus       194 lt~~~~-~~~~p~wSPDG~~la~~s~~~g~~~i~i~dl~~G~~-------------------------------------  235 (429)
T PRK03629        194 VHRSPQ-PLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAV-------------------------------------  235 (429)
T ss_pred             eecCCC-ceeeeEEcCCCCEEEEEEecCCCcEEEEEECCCCCe-------------------------------------
Confidence            344454 688999999999988643   345788888865311                                     


Q ss_pred             cCcccccccccCCeEEEEEecCCCcEEEEEcCCC--eEEEEEcCCCCcceEEEeeccCCceeEEEeccCCCCeEEEEcC-
Q 021657           81 VGPRGIYNGHEDTVEDVTFCPSSAQEFCSVGDDS--CLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSA-  157 (309)
Q Consensus        81 ~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg--~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~-  157 (309)
                       +.+..+.+   .+....|+|+|..++++.+.+|  .|.+||+.+++  . ..+..+...+....|+| +++.|+..+. 
T Consensus       236 -~~l~~~~~---~~~~~~~SPDG~~La~~~~~~g~~~I~~~d~~tg~--~-~~lt~~~~~~~~~~wSP-DG~~I~f~s~~  307 (429)
T PRK03629        236 -RQVASFPR---HNGAPAFSPDGSKLAFALSKTGSLNLYVMDLASGQ--I-RQVTDGRSNNTEPTWFP-DSQNLAYTSDQ  307 (429)
T ss_pred             -EEccCCCC---CcCCeEECCCCCEEEEEEcCCCCcEEEEEECCCCC--E-EEccCCCCCcCceEECC-CCCEEEEEeCC
Confidence             11111222   2345799999955555555555  58899998776  2 33344455678999999 8887776655 


Q ss_pred             CCcEEEE--ecCCCCCCCCCCceeeeccCCCCeeEEEEecCCCcEEEEecCCC--cEEEEeCCcccccccCCCCCcCCCC
Q 021657          158 DNSVRMF--DRRNLTSNGVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAEDG--LLNIWDYEKVGKKVEQGPRTTNYPA  233 (309)
Q Consensus       158 dg~i~i~--d~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~dg--~i~iwd~~~~~~~~~~~~~~~~~~~  233 (309)
                      ++...+|  |+..      +. ...+...........|+|||++++.++..++  .|.+||+... ..            
T Consensus       308 ~g~~~Iy~~d~~~------g~-~~~lt~~~~~~~~~~~SpDG~~Ia~~~~~~g~~~I~~~dl~~g-~~------------  367 (429)
T PRK03629        308 AGRPQVYKVNING------GA-PQRITWEGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATG-GV------------  367 (429)
T ss_pred             CCCceEEEEECCC------CC-eEEeecCCCCccCEEECCCCCEEEEEEccCCCceEEEEECCCC-Ce------------
Confidence            4444555  5554      32 3344333445567899999998765555443  4778888652 11            


Q ss_pred             ceeeeecCCCcceeeEEEccCCCeEEEEecCCCCCCCCCCeEEEEEccccccCChhhHhHhhhcccceEEEeeeCC
Q 021657          234 GLFFQHAGHRDKVVDFHWNASDPWTVVSVSDDCDSTGGGGTLQIWRMSDLIYRPQDEVLAELEKFKAHVISCTSKP  309 (309)
Q Consensus       234 ~~~~~~~~~~~~v~~~~~~~~~~~~~~s~s~d~~s~~~dg~v~vw~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~P  309 (309)
                         ..+.. ........|+|++..++.+..+.     ....+.++++.       +.....+.+|.+.+...+|+|
T Consensus       368 ---~~Lt~-~~~~~~p~~SpDG~~i~~~s~~~-----~~~~l~~~~~~-------G~~~~~l~~~~~~~~~p~Wsp  427 (429)
T PRK03629        368 ---QVLTD-TFLDETPSIAPNGTMVIYSSSQG-----MGSVLNLVSTD-------GRFKARLPATDGQVKFPAWSP  427 (429)
T ss_pred             ---EEeCC-CCCCCCceECCCCCEEEEEEcCC-----CceEEEEEECC-------CCCeEECccCCCCcCCcccCC
Confidence               11111 11234678999998877654422     12457777876       445566777888999999998

>KOG2139 consensus WD40 repeat protein [General function prediction only]

Probab=99.78  E-value=5.5e-17  Score=121.98  Aligned_cols=197  Identities=15%  Similarity=0.271  Sum_probs=139.7

Q ss_pred             ceEEEEECCCCCEEEEecCCCcEEEEeCCccccccccCCccccccCCCCceeecCCCCCCCCcccCCCCCcCcccccc-c
Q 021657           11 AEFALAMCPTEPYVLSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYN-G   89 (309)
Q Consensus        11 ~V~~~~~~~~~~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~   89 (309)
                      .+..++|++.-..+|++..|-.||+||-...                                         ....++ .
T Consensus       100 dlr~~aWhqH~~~fava~nddvVriy~ksst-----------------------------------------~pt~Lks~  138 (445)
T KOG2139|consen  100 DLRGVAWHQHIIAFAVATNDDVVRIYDKSST-----------------------------------------CPTKLKSV  138 (445)
T ss_pred             ceeeEeechhhhhhhhhccCcEEEEeccCCC-----------------------------------------CCceecch
Confidence            4678999997777899999999999997631                                         111111 2


Q ss_pred             ccCCeEEEEEecCCCcEEEEEcCCCeEEEEEcCCCCc------------ceEEEeeccCCceeEEEeccCCCCeEEEEcC
Q 021657           90 HEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTS------------PVIKVEKAHDADLHCVDWNPLDDNLILTGSA  157 (309)
Q Consensus        90 ~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~------------~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~  157 (309)
                      .+..|++++|-|.+...|+.|+..| |.+|.....-.            ..+....+| .+|++|+|.+ ++..+++++.
T Consensus       139 sQrnvtclawRPlsaselavgCr~g-IciW~~s~tln~~r~~~~~s~~~~qvl~~pgh-~pVtsmqwn~-dgt~l~tAS~  215 (445)
T KOG2139|consen  139 SQRNVTCLAWRPLSASELAVGCRAG-ICIWSDSRTLNANRNIRMMSTHHLQVLQDPGH-NPVTSMQWNE-DGTILVTASF  215 (445)
T ss_pred             hhcceeEEEeccCCcceeeeeecce-eEEEEcCcccccccccccccccchhheeCCCC-ceeeEEEEcC-CCCEEeeccc
Confidence            3467999999999888899998866 99998643110            011122333 6899999999 8988888876


Q ss_pred             -CCcEEEEecCCCCCCCCCCceeeeccCCCCeeEEEEecCCCcEEEEecCCCcEEEEeCCcccccccCCCCCcCCCCcee
Q 021657          158 -DNSVRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLF  236 (309)
Q Consensus       158 -dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~  236 (309)
                       |..|.|||..+.+    +.++.  ....+.++-+.|+||+.++| +++-|+..++|+....-..               
T Consensus       216 gsssi~iWdpdtg~----~~pL~--~~glgg~slLkwSPdgd~lf-aAt~davfrlw~e~q~wt~---------------  273 (445)
T KOG2139|consen  216 GSSSIMIWDPDTGQ----KIPLI--PKGLGGFSLLKWSPDGDVLF-AATCDAVFRLWQENQSWTK---------------  273 (445)
T ss_pred             CcceEEEEcCCCCC----ccccc--ccCCCceeeEEEcCCCCEEE-Eecccceeeeehhccccee---------------
Confidence             6789999999843    33333  23456788899999999877 6677999999966541111               


Q ss_pred             eeecCCCcceeeEEEccCCCeEEEEecCCCCCCCCCCeEEEEEccc
Q 021657          237 FQHAGHRDKVVDFHWNASDPWTVVSVSDDCDSTGGGGTLQIWRMSD  282 (309)
Q Consensus       237 ~~~~~~~~~v~~~~~~~~~~~~~~s~s~d~~s~~~dg~v~vw~~~~  282 (309)
                      .....-.+.|....|+|.|.+|+.+++         |.-++|.+..
T Consensus       274 erw~lgsgrvqtacWspcGsfLLf~~s---------gsp~lysl~f  310 (445)
T KOG2139|consen  274 ERWILGSGRVQTACWSPCGSFLLFACS---------GSPRLYSLTF  310 (445)
T ss_pred             cceeccCCceeeeeecCCCCEEEEEEc---------CCceEEEEee
Confidence            011122348999999999999999887         3455565543

>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]

Probab=99.78  E-value=6.6e-18  Score=121.62  Aligned_cols=166  Identities=19%  Similarity=0.321  Sum_probs=128.6

Q ss_pred             ceEEEEECC-CCC--EEEEecCCCcEEEEeCCccccccccCCccccccCCCCceeecCCCCCCCCcccCCCCCcCccccc
Q 021657           11 AEFALAMCP-TEP--YVLSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIY   87 (309)
Q Consensus        11 ~V~~~~~~~-~~~--~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   87 (309)
                      .|.|..+.- ++.  +|+.|-++|.+.+||+.++.....+..                              ..+.....
T Consensus       152 svmc~~~~~~c~s~~lllaGyEsghvv~wd~S~~~~~~~~~~------------------------------~~kv~~~~  201 (323)
T KOG0322|consen  152 SVMCQDKDHACGSTFLLLAGYESGHVVIWDLSTGDKIIQLPQ------------------------------SSKVESPN  201 (323)
T ss_pred             ceeeeeccccccceEEEEEeccCCeEEEEEccCCceeecccc------------------------------ccccccch
Confidence            566776533 333  466888999999999987533322221                              22334455


Q ss_pred             ccccCCeEEEEEecCCCcEEEEEcCCCeEEEEEcCCC--CcceEEEeeccCCceeEEEeccCCCCeEEEEcCCCcEEEEe
Q 021657           88 NGHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVG--TSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFD  165 (309)
Q Consensus        88 ~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~--~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d  165 (309)
                      ..|.++|.++.|.+.- ..=++|+.+..+..|++...  ..+...........|..+.+.| +++.+|+++.|+.||+|.
T Consensus       202 ash~qpvlsldyas~~-~rGisgga~dkl~~~Sl~~s~gslq~~~e~~lknpGv~gvrIRp-D~KIlATAGWD~RiRVys  279 (323)
T KOG0322|consen  202 ASHKQPVLSLDYASSC-DRGISGGADDKLVMYSLNHSTGSLQIRKEITLKNPGVSGVRIRP-DGKILATAGWDHRIRVYS  279 (323)
T ss_pred             hhccCcceeeeechhh-cCCcCCCccccceeeeeccccCcccccceEEecCCCccceEEcc-CCcEEeecccCCcEEEEE
Confidence            6799999999998764 44567888888999988643  3223333344456789999999 999999999999999999


Q ss_pred             cCCCCCCCCCCceeeeccCCCCeeEEEEecCCCcEEEEecCCCcEEEEeC
Q 021657          166 RRNLTSNGVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDY  215 (309)
Q Consensus       166 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~dg~i~iwd~  215 (309)
                      .++      ..++..++-|+..|++++|+|+.+ ++|+++.|++|.+|++
T Consensus       280 wrt------l~pLAVLkyHsagvn~vAfspd~~-lmAaaskD~rISLWkL  322 (323)
T KOG0322|consen  280 WRT------LNPLAVLKYHSAGVNAVAFSPDCE-LMAAASKDARISLWKL  322 (323)
T ss_pred             ecc------CCchhhhhhhhcceeEEEeCCCCc-hhhhccCCceEEeeec
Confidence            999      899999999999999999999977 6899999999999986

>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]

Probab=99.78  E-value=2.1e-17  Score=130.23  Aligned_cols=163  Identities=21%  Similarity=0.351  Sum_probs=120.0

Q ss_pred             ceEEEEECCC-CCEEEEecCCCcEEEEeCCccccccccCCccccccCCCCceeecCCCCCCCCcccCCCCCcCccccccc
Q 021657           11 AEFALAMCPT-EPYVLSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNG   89 (309)
Q Consensus        11 ~V~~~~~~~~-~~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   89 (309)
                      .|+|+.|-|. ...++.+-.+|.+.++|..-.  .....+.................          ...+..++..+.-
T Consensus       221 svT~ikWvpg~~~~Fl~a~~sGnlyly~~~~~--~~~t~p~~~~~k~~~~f~i~t~k----------sk~~rNPv~~w~~  288 (636)
T KOG2394|consen  221 SVTCIKWVPGSDSLFLVAHASGNLYLYDKEIV--CGATAPSYQALKDGDQFAILTSK----------SKKTRNPVARWHI  288 (636)
T ss_pred             ceEEEEEEeCCCceEEEEEecCceEEeecccc--ccCCCCcccccCCCCeeEEeeee----------ccccCCccceeEe
Confidence            6999999994 456777888999999997321  11111111111111111111110          0011244555554


Q ss_pred             ccCCeEEEEEecCCCcEEEEEcCCCeEEEEEcCCCCcceEEEeeccCCceeEEEeccCCCCeEEEEcCCCcEEEEecCCC
Q 021657           90 HEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNL  169 (309)
Q Consensus        90 ~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~  169 (309)
                      -.+.|+..+|+||| ++||+.+.||.++|+|..+.+  ....++.--+...|++|+| +++++++|+.|.-|.||.+.. 
T Consensus       289 ~~g~in~f~FS~DG-~~LA~VSqDGfLRvF~fdt~e--Llg~mkSYFGGLLCvcWSP-DGKyIvtGGEDDLVtVwSf~e-  363 (636)
T KOG2394|consen  289 GEGSINEFAFSPDG-KYLATVSQDGFLRIFDFDTQE--LLGVMKSYFGGLLCVCWSP-DGKYIVTGGEDDLVTVWSFEE-  363 (636)
T ss_pred             ccccccceeEcCCC-ceEEEEecCceEEEeeccHHH--HHHHHHhhccceEEEEEcC-CccEEEecCCcceEEEEEecc-
Confidence            56689999999998 899999999999999998877  5555555667899999999 999999999999999999998 


Q ss_pred             CCCCCCCceeeeccCCCCeeEEEEec
Q 021657          170 TSNGVGSPINKFEGHSAAVLCVQWSP  195 (309)
Q Consensus       170 ~~~~~~~~~~~~~~~~~~v~~~~~~~  195 (309)
                           .+.+..-++|+.+|+.++|.|
T Consensus       364 -----rRVVARGqGHkSWVs~VaFDp  384 (636)
T KOG2394|consen  364 -----RRVVARGQGHKSWVSVVAFDP  384 (636)
T ss_pred             -----ceEEEeccccccceeeEeecc
Confidence                 899999999999999999997

>KOG1310 consensus WD40 repeat protein [General function prediction only]

Probab=99.78  E-value=1.4e-18  Score=137.20  Aligned_cols=186  Identities=17%  Similarity=0.309  Sum_probs=140.7

Q ss_pred             CcccccccccCCeEEEEEecCCCcEEEEEcCCCeEEEEEcCCCCcceEEEeeccCCceeEEEeccCC-CCeEEEEcCCCc
Q 021657           82 GPRGIYNGHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLD-DNLILTGSADNS  160 (309)
Q Consensus        82 ~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~~l~~~~~dg~  160 (309)
                      ...+.+.+|++.|+++.|+.+| .+|++|++|-.+.|||.-..+ ..-..-.+|...|.++.|-|.. ..++++|..|..
T Consensus        41 ~lE~eL~GH~GCVN~LeWn~dG-~lL~SGSDD~r~ivWd~~~~K-llhsI~TgHtaNIFsvKFvP~tnnriv~sgAgDk~  118 (758)
T KOG1310|consen   41 DLEAELTGHTGCVNCLEWNADG-ELLASGSDDTRLIVWDPFEYK-LLHSISTGHTANIFSVKFVPYTNNRIVLSGAGDKL  118 (758)
T ss_pred             chhhhhccccceecceeecCCC-CEEeecCCcceEEeecchhcc-eeeeeecccccceeEEeeeccCCCeEEEeccCcce
Confidence            4456789999999999999999 899999999999999987555 2334456899999999999843 357889999999


Q ss_pred             EEEEecCCCCC----CCCCCceeeeccCCCCeeEEEEecCCCcEEEEecCCCcEEEEeCCcccccccCCCCCcCCCCcee
Q 021657          161 VRMFDRRNLTS----NGVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLF  236 (309)
Q Consensus       161 i~i~d~~~~~~----~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~  236 (309)
                      |++||+.....    .+.......+..|...|..|+..|++++.|.++++||+|+-||++...........     ...+
T Consensus       119 i~lfdl~~~~~~~~d~~~~~~~~~~~cht~rVKria~~p~~PhtfwsasEDGtirQyDiREph~c~p~~~~-----~~~l  193 (758)
T KOG1310|consen  119 IKLFDLDSSKEGGMDHGMEETTRCWSCHTDRVKRIATAPNGPHTFWSASEDGTIRQYDIREPHVCNPDEDC-----PSIL  193 (758)
T ss_pred             EEEEecccccccccccCccchhhhhhhhhhhhhheecCCCCCceEEEecCCcceeeecccCCccCCccccc-----cHHH
Confidence            99999985221    11134555667788889999999999889999999999999999974332221100     1111


Q ss_pred             eeecCCCcceeeEEEccCCCeEEEEecCCCCCCCCCCeEEEEEcc
Q 021657          237 FQHAGHRDKVVDFHWNASDPWTVVSVSDDCDSTGGGGTLQIWRMS  281 (309)
Q Consensus       237 ~~~~~~~~~v~~~~~~~~~~~~~~s~s~d~~s~~~dg~v~vw~~~  281 (309)
                      ..+...--...++.++|..+++++       .|+.|-..++||.+
T Consensus       194 ~ny~~~lielk~ltisp~rp~~la-------VGgsdpfarLYD~R  231 (758)
T KOG1310|consen  194 VNYNPQLIELKCLTISPSRPYYLA-------VGGSDPFARLYDRR  231 (758)
T ss_pred             HHhchhhheeeeeeecCCCCceEE-------ecCCCchhhhhhhh
Confidence            222222345689999999999998       45555999999954

>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]

Probab=99.77  E-value=5.1e-16  Score=117.04  Aligned_cols=233  Identities=12%  Similarity=0.183  Sum_probs=149.4

Q ss_pred             ceEEEEECCCCCEEEEecCCCcEEEEeCCccccccccCCcc--cccc-CCCCceeecCCCCCCCCcccCCCCCcCccccc
Q 021657           11 AEFALAMCPTEPYVLSGGKDKSVVLWSIQDHITSSATDPAT--AKSA-GSSGSIIKQSPKPGDGNDKAADGPSVGPRGIY   87 (309)
Q Consensus        11 ~V~~~~~~~~~~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~--~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   87 (309)
                      .+..+.|+.+...|..|+.||. ++|+.+............  .... -....+..+.. ......++.+......+..+
T Consensus         7 ti~~~~~Nqd~~~lsvGs~~Gy-k~~~~~~~~k~~~~~~~~~~IvEmLFSSSLvaiV~~-~qpr~Lkv~~~Kk~~~ICe~   84 (391)
T KOG2110|consen    7 TINFIGFNQDSTLLSVGSKDGY-KIFSCSPFEKCFSKDTEGVSIVEMLFSSSLVAIVSI-KQPRKLKVVHFKKKTTICEI   84 (391)
T ss_pred             ceeeeeeccceeEEEccCCCce-eEEecCchHHhhcccCCCeEEEEeecccceeEEEec-CCCceEEEEEcccCceEEEE
Confidence            6788889999989999999875 577776542211111110  0000 11111111111 11122333332222222211


Q ss_pred             ccccCCeEEEEEecCCCcEEEEEcCCCeEEEEEcCCCCcceEEEeec---cCCceeEEEeccCCCCeEEEEc--CCCcEE
Q 021657           88 NGHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPVIKVEKA---HDADLHCVDWNPLDDNLILTGS--ADNSVR  162 (309)
Q Consensus        88 ~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~---~~~~v~~~~~~~~~~~~l~~~~--~dg~i~  162 (309)
                      . ...+|.++.++.+   .|+.+-.+. |+|||++..+  ...++..   +...+.++.+++ .+.+++--+  ..|.|.
T Consensus        85 ~-fpt~IL~VrmNr~---RLvV~Lee~-IyIydI~~Mk--lLhTI~t~~~n~~gl~AlS~n~-~n~ylAyp~s~t~GdV~  156 (391)
T KOG2110|consen   85 F-FPTSILAVRMNRK---RLVVCLEES-IYIYDIKDMK--LLHTIETTPPNPKGLCALSPNN-ANCYLAYPGSTTSGDVV  156 (391)
T ss_pred             e-cCCceEEEEEccc---eEEEEEccc-EEEEecccce--eehhhhccCCCccceEeeccCC-CCceEEecCCCCCceEE
Confidence            1 3456788888653   466665554 9999999887  5555433   344455666655 455666533  358999


Q ss_pred             EEecCCCCCCCCCCceeeeccCCCCeeEEEEecCCCcEEEEecCCCc-EEEEeCCcccccccCCCCCcCCCCceeeeecC
Q 021657          163 MFDRRNLTSNGVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAEDGL-LNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAG  241 (309)
Q Consensus       163 i~d~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~dg~-i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~  241 (309)
                      +||..+      .+++..+..|++++.+++|+++|. ++|++++.|+ ||||.+..               .+.+++++-
T Consensus       157 l~d~~n------l~~v~~I~aH~~~lAalafs~~G~-llATASeKGTVIRVf~v~~---------------G~kl~eFRR  214 (391)
T KOG2110|consen  157 LFDTIN------LQPVNTINAHKGPLAALAFSPDGT-LLATASEKGTVIRVFSVPE---------------GQKLYEFRR  214 (391)
T ss_pred             EEEccc------ceeeeEEEecCCceeEEEECCCCC-EEEEeccCceEEEEEEcCC---------------ccEeeeeeC
Confidence            999999      899999999999999999999999 6899999988 79999987               333444432


Q ss_pred             C--CcceeeEEEccCCCeEEEEecCCCCCCCCCCeEEEEEcccc
Q 021657          242 H--RDKVVDFHWNASDPWTVVSVSDDCDSTGGGGTLQIWRMSDL  283 (309)
Q Consensus       242 ~--~~~v~~~~~~~~~~~~~~s~s~d~~s~~~dg~v~vw~~~~~  283 (309)
                      -  -..|.+++|+|+.++|.++++.        ++|++|.+..-
T Consensus       215 G~~~~~IySL~Fs~ds~~L~~sS~T--------eTVHiFKL~~~  250 (391)
T KOG2110|consen  215 GTYPVSIYSLSFSPDSQFLAASSNT--------ETVHIFKLEKV  250 (391)
T ss_pred             CceeeEEEEEEECCCCCeEEEecCC--------CeEEEEEeccc
Confidence            2  3468999999999977755444        69999999853

>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=99.77  E-value=3.5e-18  Score=132.21  Aligned_cols=230  Identities=13%  Similarity=0.157  Sum_probs=169.5

Q ss_pred             EEEEECCCCCEEEEecCCCcEEEEeCCccccccccCCccccccCCCCceeecCCCCCCCCcccCCCCCcCcccccccccC
Q 021657           13 FALAMCPTEPYVLSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHED   92 (309)
Q Consensus        13 ~~~~~~~~~~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   92 (309)
                      +.+.++.+|+.|+.|+..|.|-.+|+.+............+....-.....+...+....++++|... ..++.++.| .
T Consensus       133 Y~~~ytrnGrhlllgGrKGHlAa~Dw~t~~L~~Ei~v~Etv~Dv~~LHneq~~AVAQK~y~yvYD~~G-tElHClk~~-~  210 (545)
T KOG1272|consen  133 YHLDYTRNGRHLLLGGRKGHLAAFDWVTKKLHFEINVMETVRDVTFLHNEQFFAVAQKKYVYVYDNNG-TELHCLKRH-I  210 (545)
T ss_pred             eeeeecCCccEEEecCCccceeeeecccceeeeeeehhhhhhhhhhhcchHHHHhhhhceEEEecCCC-cEEeehhhc-C
Confidence            58899999999999999999999999987555444433322221111111222222334445555433 233445544 4


Q ss_pred             CeEEEEEecCCCcEEEEEcCCCeEEEEEcCCCCcceEEEeeccCCceeEEEeccCCCCeEEEEcCCCcEEEEecCCCCCC
Q 021657           93 TVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSN  172 (309)
Q Consensus        93 ~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~  172 (309)
                      .|..+.|.|.. .+|++++..|.++.-|+.+++  .+..+....+.+..|+-+| -...+-+|...|+|.+|....    
T Consensus       211 ~v~rLeFLPyH-fLL~~~~~~G~L~Y~DVS~Gk--lVa~~~t~~G~~~vm~qNP-~NaVih~GhsnGtVSlWSP~s----  282 (545)
T KOG1272|consen  211 RVARLEFLPYH-FLLVAASEAGFLKYQDVSTGK--LVASIRTGAGRTDVMKQNP-YNAVIHLGHSNGTVSLWSPNS----  282 (545)
T ss_pred             chhhhcccchh-heeeecccCCceEEEeechhh--hhHHHHccCCccchhhcCC-ccceEEEcCCCceEEecCCCC----
Confidence            68899999998 889999999999999999999  6666767778899999999 888999999999999999998    


Q ss_pred             CCCCceeeeccCCCCeeEEEEecCCCcEEEEecCCCcEEEEeCCcccccccCCCCCcCCCCceeeeecCCCcceeeEEEc
Q 021657          173 GVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKVVDFHWN  252 (309)
Q Consensus       173 ~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~  252 (309)
                        .+++..+-.|.++|.+|++.++|.+ +|+.+.|..++|||+++..++.               ++.. ..+...+++|
T Consensus       283 --kePLvKiLcH~g~V~siAv~~~G~Y-MaTtG~Dr~~kIWDlR~~~ql~---------------t~~t-p~~a~~ls~S  343 (545)
T KOG1272|consen  283 --KEPLVKILCHRGPVSSIAVDRGGRY-MATTGLDRKVKIWDLRNFYQLH---------------TYRT-PHPASNLSLS  343 (545)
T ss_pred             --cchHHHHHhcCCCcceEEECCCCcE-EeecccccceeEeeeccccccc---------------eeec-CCCccccccc
Confidence              8899999999999999999999997 5799999999999999954322               1111 2356778888


Q ss_pred             cCCCeEEEEecCCCCCCCCCCeEEEEEcc
Q 021657          253 ASDPWTVVSVSDDCDSTGGGGTLQIWRMS  281 (309)
Q Consensus       253 ~~~~~~~~s~s~d~~s~~~dg~v~vw~~~  281 (309)
                      ..+ .|+++-+         ..|.||.=.
T Consensus       344 qkg-lLA~~~G---------~~v~iw~d~  362 (545)
T KOG1272|consen  344 QKG-LLALSYG---------DHVQIWKDA  362 (545)
T ss_pred             ccc-ceeeecC---------Ceeeeehhh
Confidence            643 2333222         589999744

>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins

Probab=99.76  E-value=1.6e-16  Score=115.99  Aligned_cols=158  Identities=20%  Similarity=0.374  Sum_probs=108.7

Q ss_pred             EEEEEecCCCcEEEEEcC---------CCeEEEEEcCCCCcceEEEeeccCCceeEEEeccCCCCeEEEE--cCCCcEEE
Q 021657           95 EDVTFCPSSAQEFCSVGD---------DSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTG--SADNSVRM  163 (309)
Q Consensus        95 ~~~~~~~~~~~~l~s~~~---------dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~--~~dg~i~i  163 (309)
                      ..+.|+|+|..+++....         -|...+|.++....+.........++|.+++|+| +++.|++.  ..++.|.+
T Consensus         9 ~~~~W~~~G~~l~~~~~~~~~~~~ks~~~~~~l~~~~~~~~~~~~i~l~~~~~I~~~~WsP-~g~~favi~g~~~~~v~l   87 (194)
T PF08662_consen    9 AKLHWQPSGDYLLVKVQTRVDKSGKSYYGEFELFYLNEKNIPVESIELKKEGPIHDVAWSP-NGNEFAVIYGSMPAKVTL   87 (194)
T ss_pred             EEEEecccCCEEEEEEEEeeccCcceEEeeEEEEEEecCCCccceeeccCCCceEEEEECc-CCCEEEEEEccCCcccEE
Confidence            467899998665555541         2456677665444333333333455799999999 88876554  45789999


Q ss_pred             EecCCCCCCCCCCceeeeccCCCCeeEEEEecCCCcEEEEec--CCCcEEEEeCCcccccccCCCCCcCCCCceeeeecC
Q 021657          164 FDRRNLTSNGVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSA--EDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAG  241 (309)
Q Consensus       164 ~d~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~--~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~  241 (309)
                      ||++       .+.+..+.  ...++.+.|+|+|++++++|.  ..|.|.+||+++               ...+.... 
T Consensus        88 yd~~-------~~~i~~~~--~~~~n~i~wsP~G~~l~~~g~~n~~G~l~~wd~~~---------------~~~i~~~~-  142 (194)
T PF08662_consen   88 YDVK-------GKKIFSFG--TQPRNTISWSPDGRFLVLAGFGNLNGDLEFWDVRK---------------KKKISTFE-  142 (194)
T ss_pred             EcCc-------ccEeEeec--CCCceEEEECCCCCEEEEEEccCCCcEEEEEECCC---------------CEEeeccc-
Confidence            9996       56677775  467889999999997654432  347799999996               22333322 


Q ss_pred             CCcceeeEEEccCCCeEEEEecCCCCCCCCCCeEEEEEcc
Q 021657          242 HRDKVVDFHWNASDPWTVVSVSDDCDSTGGGGTLQIWRMS  281 (309)
Q Consensus       242 ~~~~v~~~~~~~~~~~~~~s~s~d~~s~~~dg~v~vw~~~  281 (309)
                      | ..++.++|+|+|.+++.+.+.-  --..|+.++||++.
T Consensus       143 ~-~~~t~~~WsPdGr~~~ta~t~~--r~~~dng~~Iw~~~  179 (194)
T PF08662_consen  143 H-SDATDVEWSPDGRYLATATTSP--RLRVDNGFKIWSFQ  179 (194)
T ss_pred             c-CcEEEEEEcCCCCEEEEEEecc--ceeccccEEEEEec
Confidence            3 3478999999999888765431  23356999999997

>PRK04922 tolB translocation protein TolB; Provisional

Probab=99.76  E-value=2e-16  Score=130.89  Aligned_cols=225  Identities=12%  Similarity=0.111  Sum_probs=142.5

Q ss_pred             ccCCCCCcceEEEEECCCCCEEEEecCC---CcEEEEeCCccccccccCCccccccCCCCceeecCCCCCCCCcccCCCC
Q 021657            3 ILTGHQDNAEFALAMCPTEPYVLSGGKD---KSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGP   79 (309)
Q Consensus         3 ~l~~H~~~~V~~~~~~~~~~~l~t~~~d---g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   79 (309)
                      .+..|.. .+.+.+|+|||+.|+..+.+   ..|.+||+.++..                                    
T Consensus       198 ~lt~~~~-~v~~p~wSpDg~~la~~s~~~~~~~l~~~dl~~g~~------------------------------------  240 (433)
T PRK04922        198 TILRSAE-PILSPAWSPDGKKLAYVSFERGRSAIYVQDLATGQR------------------------------------  240 (433)
T ss_pred             EeecCCC-ccccccCCCCCCEEEEEecCCCCcEEEEEECCCCCE------------------------------------
Confidence            4555665 68899999999998877643   4689999875321                                    


Q ss_pred             CcCcccccccccCCeEEEEEecCCCcEEEEEcCCC--eEEEEEcCCCCcceEEEeeccCCceeEEEeccCCCCeEEEEc-
Q 021657           80 SVGPRGIYNGHEDTVEDVTFCPSSAQEFCSVGDDS--CLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGS-  156 (309)
Q Consensus        80 ~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg--~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~-  156 (309)
                           ..+....+......|+|+|..++++.+.+|  .|.+||+.+++   ...+..+.......+|+| +++.|+..+ 
T Consensus       241 -----~~l~~~~g~~~~~~~SpDG~~l~~~~s~~g~~~Iy~~d~~~g~---~~~lt~~~~~~~~~~~sp-DG~~l~f~sd  311 (433)
T PRK04922        241 -----ELVASFRGINGAPSFSPDGRRLALTLSRDGNPEIYVMDLGSRQ---LTRLTNHFGIDTEPTWAP-DGKSIYFTSD  311 (433)
T ss_pred             -----EEeccCCCCccCceECCCCCEEEEEEeCCCCceEEEEECCCCC---eEECccCCCCccceEECC-CCCEEEEEEC
Confidence                 111122333457799999965556666665  59999998776   333444555567889999 888777665 


Q ss_pred             CCCc--EEEEecCCCCCCCCCCceeeeccCCCCeeEEEEecCCCcEEEEecCCC--cEEEEeCCcccccccCCCCCcCCC
Q 021657          157 ADNS--VRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAEDG--LLNIWDYEKVGKKVEQGPRTTNYP  232 (309)
Q Consensus       157 ~dg~--i~i~d~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~dg--~i~iwd~~~~~~~~~~~~~~~~~~  232 (309)
                      .+|.  |+++|+.+      ++ ...+..........+|+|+|++++++...++  .|.+||+.. ++..          
T Consensus       312 ~~g~~~iy~~dl~~------g~-~~~lt~~g~~~~~~~~SpDG~~Ia~~~~~~~~~~I~v~d~~~-g~~~----------  373 (433)
T PRK04922        312 RGGRPQIYRVAASG------GS-AERLTFQGNYNARASVSPDGKKIAMVHGSGGQYRIAVMDLST-GSVR----------  373 (433)
T ss_pred             CCCCceEEEEECCC------CC-eEEeecCCCCccCEEECCCCCEEEEEECCCCceeEEEEECCC-CCeE----------
Confidence            4555  66666655      33 2223222334557899999998665544333  588999865 2111          


Q ss_pred             CceeeeecCCCcceeeEEEccCCCeEEEEecCCCCCCCCCCeEEEEEccccccCChhhHhHhhhcccceEEEeeeCC
Q 021657          233 AGLFFQHAGHRDKVVDFHWNASDPWTVVSVSDDCDSTGGGGTLQIWRMSDLIYRPQDEVLAELEKFKAHVISCTSKP  309 (309)
Q Consensus       233 ~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~s~d~~s~~~dg~v~vw~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~P  309 (309)
                           .+. +........|+|++..++.+....     ..+.|.++++.       +.....+..+.+.+...+|+|
T Consensus       374 -----~Lt-~~~~~~~p~~spdG~~i~~~s~~~-----g~~~L~~~~~~-------g~~~~~l~~~~g~~~~p~wsp  432 (433)
T PRK04922        374 -----TLT-PGSLDESPSFAPNGSMVLYATREG-----GRGVLAAVSTD-------GRVRQRLVSADGEVREPAWSP  432 (433)
T ss_pred             -----ECC-CCCCCCCceECCCCCEEEEEEecC-----CceEEEEEECC-------CCceEEcccCCCCCCCCccCC
Confidence                 111 222345678999999877654321     23567777775       333455555667788888887

>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]

Probab=99.76  E-value=1.6e-16  Score=117.57  Aligned_cols=195  Identities=15%  Similarity=0.227  Sum_probs=151.0

Q ss_pred             ccCCeEEEEEecCCCcEEEEEcCCCeEEEEEcCCCC-cceEEEeeccCCceeEEEeccCCCCeEEEEcCCCcEEEEecCC
Q 021657           90 HEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGT-SPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRN  168 (309)
Q Consensus        90 ~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~-~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~  168 (309)
                      -..+|+|.+|++++ ..+|.+-....|.||...... ......+..|...|++++|+| ..+.|++++.|..-++|....
T Consensus         9 ~~~pitchAwn~dr-t~iAv~~~~~evhiy~~~~~~~w~~~htls~Hd~~vtgvdWap-~snrIvtcs~drnayVw~~~~   86 (361)
T KOG1523|consen    9 LLEPITCHAWNSDR-TQIAVSPNNHEVHIYSMLGADLWEPAHTLSEHDKIVTGVDWAP-KSNRIVTCSHDRNAYVWTQPS   86 (361)
T ss_pred             ccCceeeeeecCCC-ceEEeccCCceEEEEEecCCCCceeceehhhhCcceeEEeecC-CCCceeEccCCCCccccccCC
Confidence            45789999999998 789999999999999988776 667888999999999999999 999999999999999999854


Q ss_pred             CCCCCCCCceeeeccCCCCeeEEEEecCCCcEEEEecCCCcEEEEeCCcccccccCCCCCcCCCCceeeeecCCCcceee
Q 021657          169 LTSNGVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKVVD  248 (309)
Q Consensus       169 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~  248 (309)
                      ...   .++.-.+..++...+++.|+|.+.. ||+|+.-..|.||-+.....-           --....-..+...|++
T Consensus        87 ~~~---WkptlvLlRiNrAAt~V~WsP~enk-FAVgSgar~isVcy~E~ENdW-----------WVsKhikkPirStv~s  151 (361)
T KOG1523|consen   87 GGT---WKPTLVLLRINRAATCVKWSPKENK-FAVGSGARLISVCYYEQENDW-----------WVSKHIKKPIRSTVTS  151 (361)
T ss_pred             CCe---eccceeEEEeccceeeEeecCcCce-EEeccCccEEEEEEEecccce-----------ehhhhhCCccccceee
Confidence            222   5666677778899999999999984 889999999999988762211           0001122346678999


Q ss_pred             EEEccCCCeEEEEecCCCCCCCCCCeEEEEEcccc------------ccCChhhHhHhhhcccceEEEeeeCC
Q 021657          249 FHWNASDPWTVVSVSDDCDSTGGGGTLQIWRMSDL------------IYRPQDEVLAELEKFKAHVISCTSKP  309 (309)
Q Consensus       249 ~~~~~~~~~~~~s~s~d~~s~~~dg~v~vw~~~~~------------~~~~~~~~~~~~~~h~~~v~~~~~~P  309 (309)
                      +.|+|++- +++       +|+.|+..+|+..--.            ...|-++++.++..-.+.|..+.|+|
T Consensus       152 ldWhpnnV-Lla-------aGs~D~k~rVfSayIK~Vdekpap~pWgsk~PFG~lm~E~~~~ggwvh~v~fs~  216 (361)
T KOG1523|consen  152 LDWHPNNV-LLA-------AGSTDGKCRVFSAYIKGVDEKPAPTPWGSKMPFGQLMSEASSSGGWVHGVLFSP  216 (361)
T ss_pred             eeccCCcc-eec-------ccccCcceeEEEEeeeccccCCCCCCCccCCcHHHHHHhhccCCCceeeeEeCC
Confidence            99999654 555       5556699999984321            12334566677766678899998886

>PRK05137 tolB translocation protein TolB; Provisional

Probab=99.76  E-value=5.5e-16  Score=128.48  Aligned_cols=226  Identities=12%  Similarity=0.112  Sum_probs=144.0

Q ss_pred             cccCCCCCcceEEEEECCCCCEEEEecC---CCcEEEEeCCccccccccCCccccccCCCCceeecCCCCCCCCcccCCC
Q 021657            2 EILTGHQDNAEFALAMCPTEPYVLSGGK---DKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADG   78 (309)
Q Consensus         2 ~~l~~H~~~~V~~~~~~~~~~~l~t~~~---dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   78 (309)
                      +.+..|.. .+.+.+|+|||+.|+..+.   +..|.+||+.++..                                   
T Consensus       195 ~~lt~~~~-~v~~p~wSpDG~~lay~s~~~g~~~i~~~dl~~g~~-----------------------------------  238 (435)
T PRK05137        195 RYLTDGSS-LVLTPRFSPNRQEITYMSYANGRPRVYLLDLETGQR-----------------------------------  238 (435)
T ss_pred             EEEecCCC-CeEeeEECCCCCEEEEEEecCCCCEEEEEECCCCcE-----------------------------------
Confidence            34666777 7899999999999887653   46899999875311                                   


Q ss_pred             CCcCcccccccccCCeEEEEEecCCCcEEEEEcCCCe--EEEEEcCCCCcceEEEeeccCCceeEEEeccCCCCeEEEEc
Q 021657           79 PSVGPRGIYNGHEDTVEDVTFCPSSAQEFCSVGDDSC--LILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGS  156 (309)
Q Consensus        79 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~--i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~  156 (309)
                            ..+..+.+.+....|+|+|..++++.+.++.  |.+||+.+++   ...+..+........|+| +++.++..+
T Consensus       239 ------~~l~~~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~d~~~~~---~~~Lt~~~~~~~~~~~sp-DG~~i~f~s  308 (435)
T PRK05137        239 ------ELVGNFPGMTFAPRFSPDGRKVVMSLSQGGNTDIYTMDLRSGT---TTRLTDSPAIDTSPSYSP-DGSQIVFES  308 (435)
T ss_pred             ------EEeecCCCcccCcEECCCCCEEEEEEecCCCceEEEEECCCCc---eEEccCCCCccCceeEcC-CCCEEEEEE
Confidence                  1223344566788999999666667766665  7777887766   334445556677899999 888777665


Q ss_pred             C-CC--cEEEEecCCCCCCCCCCceeeeccCCCCeeEEEEecCCCcEEEEecCCC--cEEEEeCCcccccccCCCCCcCC
Q 021657          157 A-DN--SVRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAEDG--LLNIWDYEKVGKKVEQGPRTTNY  231 (309)
Q Consensus       157 ~-dg--~i~i~d~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~dg--~i~iwd~~~~~~~~~~~~~~~~~  231 (309)
                      . +|  .|+++|+..      +. ...+......+....|+|+|++++.+....+  .|.+||+... ..          
T Consensus       309 ~~~g~~~Iy~~d~~g------~~-~~~lt~~~~~~~~~~~SpdG~~ia~~~~~~~~~~i~~~d~~~~-~~----------  370 (435)
T PRK05137        309 DRSGSPQLYVMNADG------SN-PRRISFGGGRYSTPVWSPRGDLIAFTKQGGGQFSIGVMKPDGS-GE----------  370 (435)
T ss_pred             CCCCCCeEEEEECCC------CC-eEEeecCCCcccCeEECCCCCEEEEEEcCCCceEEEEEECCCC-ce----------
Confidence            3 33  577888765      33 3344334455677899999998665543333  5777776441 11          


Q ss_pred             CCceeeeecCCCcceeeEEEccCCCeEEEEecCCCCCCCCC--CeEEEEEccccccCChhhHhHhhhcccceEEEeeeCC
Q 021657          232 PAGLFFQHAGHRDKVVDFHWNASDPWTVVSVSDDCDSTGGG--GTLQIWRMSDLIYRPQDEVLAELEKFKAHVISCTSKP  309 (309)
Q Consensus       232 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~s~d~~s~~~d--g~v~vw~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~P  309 (309)
                           ..+. ....+....|+|++..++.+....    +.+  ..|.++++..      .. ...+. ..+.+...+|+|
T Consensus       371 -----~~lt-~~~~~~~p~~spDG~~i~~~~~~~----~~~~~~~L~~~dl~g------~~-~~~l~-~~~~~~~p~Wsp  432 (435)
T PRK05137        371 -----RILT-SGFLVEGPTWAPNGRVIMFFRQTP----GSGGAPKLYTVDLTG------RN-EREVP-TPGDASDPAWSP  432 (435)
T ss_pred             -----Eecc-CCCCCCCCeECCCCCEEEEEEccC----CCCCcceEEEEECCC------Cc-eEEcc-CCCCccCcccCC
Confidence                 0111 112367789999999877665432    221  3677777762      22 23333 234566777776

>PRK11028 6-phosphogluconolactonase; Provisional

Probab=99.74  E-value=1.9e-15  Score=121.23  Aligned_cols=210  Identities=8%  Similarity=0.146  Sum_probs=135.2

Q ss_pred             eEEEEECCCCCEEEEecC-CCcEEEEeCCccccccccCCccccccCCCCceeecCCCCCCCCcccCCCCCcCcccccccc
Q 021657           12 EFALAMCPTEPYVLSGGK-DKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGH   90 (309)
Q Consensus        12 V~~~~~~~~~~~l~t~~~-dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   90 (309)
                      ...++|+|++++|++++. ++.|.+|++++.....                                    ..+..+. +
T Consensus        82 p~~i~~~~~g~~l~v~~~~~~~v~v~~~~~~g~~~------------------------------------~~~~~~~-~  124 (330)
T PRK11028         82 PTHISTDHQGRFLFSASYNANCVSVSPLDKDGIPV------------------------------------APIQIIE-G  124 (330)
T ss_pred             ceEEEECCCCCEEEEEEcCCCeEEEEEECCCCCCC------------------------------------Cceeecc-C
Confidence            468999999998887764 8899999986321000                                    0011111 1


Q ss_pred             cCCeEEEEEecCCCcEEEEEcCCCeEEEEEcCCCCcce-----EEEeeccCCceeEEEeccCCCCeEEEEcC-CCcEEEE
Q 021657           91 EDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPV-----IKVEKAHDADLHCVDWNPLDDNLILTGSA-DNSVRMF  164 (309)
Q Consensus        91 ~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~-----~~~~~~~~~~v~~~~~~~~~~~~l~~~~~-dg~i~i~  164 (309)
                      ......++++|+++.++++...++.|.+||+.+.....     .... ........+.|+| ++++++++.. ++.|.+|
T Consensus       125 ~~~~~~~~~~p~g~~l~v~~~~~~~v~v~d~~~~g~l~~~~~~~~~~-~~g~~p~~~~~~p-dg~~lyv~~~~~~~v~v~  202 (330)
T PRK11028        125 LEGCHSANIDPDNRTLWVPCLKEDRIRLFTLSDDGHLVAQEPAEVTT-VEGAGPRHMVFHP-NQQYAYCVNELNSSVDVW  202 (330)
T ss_pred             CCcccEeEeCCCCCEEEEeeCCCCEEEEEEECCCCcccccCCCceec-CCCCCCceEEECC-CCCEEEEEecCCCEEEEE
Confidence            23356788999995666777788999999997633110     0111 1234567899999 8998877766 8999999


Q ss_pred             ecCCCCCCCCCCceeeeccC------CCCeeEEEEecCCCcEEEEecCCCcEEEEeCCcccccccCCCCCcCCCCceeee
Q 021657          165 DRRNLTSNGVGSPINKFEGH------SAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQ  238 (309)
Q Consensus       165 d~~~~~~~~~~~~~~~~~~~------~~~v~~~~~~~~~~~l~~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~  238 (309)
                      |+.....  ..+.+..+...      ......+.++|++++++++...++.|.+|++...+...           ..+..
T Consensus       203 ~~~~~~~--~~~~~~~~~~~p~~~~~~~~~~~i~~~pdg~~lyv~~~~~~~I~v~~i~~~~~~~-----------~~~~~  269 (330)
T PRK11028        203 QLKDPHG--EIECVQTLDMMPADFSDTRWAADIHITPDGRHLYACDRTASLISVFSVSEDGSVL-----------SFEGH  269 (330)
T ss_pred             EEeCCCC--CEEEEEEEecCCCcCCCCccceeEEECCCCCEEEEecCCCCeEEEEEEeCCCCeE-----------EEeEE
Confidence            9974210  02233333221      12234688999999887665668999999997632211           11111


Q ss_pred             ecCCCcceeeEEEccCCCeEEEEecCCCCCCCCCCeEEEEEcc
Q 021657          239 HAGHRDKVVDFHWNASDPWTVVSVSDDCDSTGGGGTLQIWRMS  281 (309)
Q Consensus       239 ~~~~~~~v~~~~~~~~~~~~~~s~s~d~~s~~~dg~v~vw~~~  281 (309)
                      ... ......+.++|++.+++++...+       ++|.+|+++
T Consensus       270 ~~~-~~~p~~~~~~~dg~~l~va~~~~-------~~v~v~~~~  304 (330)
T PRK11028        270 QPT-ETQPRGFNIDHSGKYLIAAGQKS-------HHISVYEID  304 (330)
T ss_pred             Eec-cccCCceEECCCCCEEEEEEccC-------CcEEEEEEc
Confidence            111 12456789999999999865544       899999986

>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.74  E-value=4.3e-17  Score=124.70  Aligned_cols=180  Identities=17%  Similarity=0.226  Sum_probs=133.8

Q ss_pred             EEEEEecCCCcEEEEEcCCCeEEEEEcCCCCcceEEEeeccCCceeEEEeccCCCCeEEEEcCCCcEEEEecCCCCCCCC
Q 021657           95 EDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGV  174 (309)
Q Consensus        95 ~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~  174 (309)
                      ..++|+++| ..+++|+.||++|+|+.....  .......|...|.++.|+| ++++|++-+.| ..+||+.++      
T Consensus       148 k~vaf~~~g-s~latgg~dg~lRv~~~Ps~~--t~l~e~~~~~eV~DL~FS~-dgk~lasig~d-~~~VW~~~~------  216 (398)
T KOG0771|consen  148 KVVAFNGDG-SKLATGGTDGTLRVWEWPSML--TILEEIAHHAEVKDLDFSP-DGKFLASIGAD-SARVWSVNT------  216 (398)
T ss_pred             eEEEEcCCC-CEeeeccccceEEEEecCcch--hhhhhHhhcCccccceeCC-CCcEEEEecCC-ceEEEEecc------
Confidence            678999998 889999999999999977666  5667778999999999999 99999999999 899999999      


Q ss_pred             CCceeeecc--CCCCeeEEEEecCC---C-cEEEEecCCCcEEEEeCCcccccccCCCCCcCCCCceeeeecCCCcceee
Q 021657          175 GSPINKFEG--HSAAVLCVQWSPDK---S-SVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKVVD  248 (309)
Q Consensus       175 ~~~~~~~~~--~~~~v~~~~~~~~~---~-~l~~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~  248 (309)
                      +..+.+...  .+.....+.|+.|+   . ++++.-..-+.|+.||+...... .         .....+.......|.+
T Consensus       217 g~~~a~~t~~~k~~~~~~cRF~~d~~~~~l~laa~~~~~~~v~~~~~~~w~~~-~---------~l~~~~~~~~~~siSs  286 (398)
T KOG0771|consen  217 GAALARKTPFSKDEMFSSCRFSVDNAQETLRLAASQFPGGGVRLCDISLWSGS-N---------FLRLRKKIKRFKSISS  286 (398)
T ss_pred             CchhhhcCCcccchhhhhceecccCCCceEEEEEecCCCCceeEEEeeeeccc-c---------ccchhhhhhccCccee
Confidence            666655542  23345667787776   2 24444455677888887664331 1         0111122233457999


Q ss_pred             EEEccCCCeEEEEecCCCCCCCCCCeEEEEEccccccCChhhHhH-hhhcccceEEEeeeCC
Q 021657          249 FHWNASDPWTVVSVSDDCDSTGGGGTLQIWRMSDLIYRPQDEVLA-ELEKFKAHVISCTSKP  309 (309)
Q Consensus       249 ~~~~~~~~~~~~s~s~d~~s~~~dg~v~vw~~~~~~~~~~~~~~~-~~~~h~~~v~~~~~~P  309 (309)
                      ++.+++|.+++        -|+.||.|-|++..+      .++++ .-+.|...|+.+.|+|
T Consensus       287 l~VS~dGkf~A--------lGT~dGsVai~~~~~------lq~~~~vk~aH~~~VT~ltF~P  334 (398)
T KOG0771|consen  287 LAVSDDGKFLA--------LGTMDGSVAIYDAKS------LQRLQYVKEAHLGFVTGLTFSP  334 (398)
T ss_pred             EEEcCCCcEEE--------EeccCCcEEEEEece------eeeeEeehhhheeeeeeEEEcC
Confidence            99999888655        455569999999984      44433 3457999999999998

>PRK02889 tolB translocation protein TolB; Provisional

Probab=99.74  E-value=5.5e-16  Score=127.93  Aligned_cols=227  Identities=10%  Similarity=0.061  Sum_probs=137.9

Q ss_pred             ccCCCCCcceEEEEECCCCCEEEEecCC---CcEEEEeCCccccccccCCccccccCCCCceeecCCCCCCCCcccCCCC
Q 021657            3 ILTGHQDNAEFALAMCPTEPYVLSGGKD---KSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGP   79 (309)
Q Consensus         3 ~l~~H~~~~V~~~~~~~~~~~l~t~~~d---g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   79 (309)
                      .+..+.. .+.+.+|+|||+.|+..+.+   ..|.+||+.++...                                   
T Consensus       190 ~l~~~~~-~v~~p~wSPDG~~la~~s~~~~~~~I~~~dl~~g~~~-----------------------------------  233 (427)
T PRK02889        190 SALSSPE-PIISPAWSPDGTKLAYVSFESKKPVVYVHDLATGRRR-----------------------------------  233 (427)
T ss_pred             EeccCCC-CcccceEcCCCCEEEEEEccCCCcEEEEEECCCCCEE-----------------------------------
Confidence            3445666 78899999999998876643   35999998754211                                   


Q ss_pred             CcCcccccccccCCeEEEEEecCCCcEEEEEcCCCeEEEEEcC--CCCcceEEEeeccCCceeEEEeccCCCCeEEEEc-
Q 021657           80 SVGPRGIYNGHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDAR--VGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGS-  156 (309)
Q Consensus        80 ~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~--~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~-  156 (309)
                            .+....+.+....|+|+|..++++.+.+|...||.+.  .+.   ...+..+........|+| +++.++..+ 
T Consensus       234 ------~l~~~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~d~~~~~---~~~lt~~~~~~~~~~wSp-DG~~l~f~s~  303 (427)
T PRK02889        234 ------VVANFKGSNSAPAWSPDGRTLAVALSRDGNSQIYTVNADGSG---LRRLTQSSGIDTEPFFSP-DGRSIYFTSD  303 (427)
T ss_pred             ------EeecCCCCccceEECCCCCEEEEEEccCCCceEEEEECCCCC---cEECCCCCCCCcCeEEcC-CCCEEEEEec
Confidence                  1112233456789999995555677888876766553  333   333444555567789999 888777554 


Q ss_pred             CCCcEEEEecCCCCCCCCCCceeeeccCCCCeeEEEEecCCCcEEEEecCCC--cEEEEeCCcccccccCCCCCcCCCCc
Q 021657          157 ADNSVRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAEDG--LLNIWDYEKVGKKVEQGPRTTNYPAG  234 (309)
Q Consensus       157 ~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~dg--~i~iwd~~~~~~~~~~~~~~~~~~~~  234 (309)
                      .+|...+|.+....    +. ...+..........+|+|+|++++.+...++  .|.+||+... +..            
T Consensus       304 ~~g~~~Iy~~~~~~----g~-~~~lt~~g~~~~~~~~SpDG~~Ia~~s~~~g~~~I~v~d~~~g-~~~------------  365 (427)
T PRK02889        304 RGGAPQIYRMPASG----GA-AQRVTFTGSYNTSPRISPDGKLLAYISRVGGAFKLYVQDLATG-QVT------------  365 (427)
T ss_pred             CCCCcEEEEEECCC----Cc-eEEEecCCCCcCceEECCCCCEEEEEEccCCcEEEEEEECCCC-CeE------------
Confidence            35666677654311    22 2222222233446789999998654443333  6899998762 111            


Q ss_pred             eeeeecCCCcceeeEEEccCCCeEEEEecCCCCCCCCCCeEEEEEccccccCChhhHhHhhhcccceEEEeeeCC
Q 021657          235 LFFQHAGHRDKVVDFHWNASDPWTVVSVSDDCDSTGGGGTLQIWRMSDLIYRPQDEVLAELEKFKAHVISCTSKP  309 (309)
Q Consensus       235 ~~~~~~~~~~~v~~~~~~~~~~~~~~s~s~d~~s~~~dg~v~vw~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~P  309 (309)
                         .+.. ........|+|++..++.+....    + ...+.+-++.       +.....+..+.+.+...+|+|
T Consensus       366 ---~lt~-~~~~~~p~~spdg~~l~~~~~~~----g-~~~l~~~~~~-------g~~~~~l~~~~g~~~~p~wsp  424 (427)
T PRK02889        366 ---ALTD-TTRDESPSFAPNGRYILYATQQG----G-RSVLAAVSSD-------GRIKQRLSVQGGDVREPSWGP  424 (427)
T ss_pred             ---EccC-CCCccCceECCCCCEEEEEEecC----C-CEEEEEEECC-------CCceEEeecCCCCCCCCccCC
Confidence               1111 12336789999999877765433    1 1234444443       334444555667788888887

>KOG3881 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.74  E-value=1e-15  Score=116.23  Aligned_cols=200  Identities=15%  Similarity=0.162  Sum_probs=149.5

Q ss_pred             CEEEEecCCCcEEEEeCCccccccccCCccccccCCCCceeecCCCCCCCCcccCCCCCcCcccccccccCCeEEEEEec
Q 021657           22 PYVLSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCP  101 (309)
Q Consensus        22 ~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~  101 (309)
                      ..|++|-.+|.+.+|..+.+...                                    ..++..+..+ ..+..+.-++
T Consensus       116 g~Litc~~sG~l~~~~~k~~d~h------------------------------------ss~l~~la~g-~g~~~~r~~~  158 (412)
T KOG3881|consen  116 GTLITCVSSGNLQVRHDKSGDLH------------------------------------SSKLIKLATG-PGLYDVRQTD  158 (412)
T ss_pred             CEEEEEecCCcEEEEeccCCccc------------------------------------cccceeeecC-CceeeeccCC
Confidence            46888899999999998743211                                    1112222323 4566777777


Q ss_pred             CCCcEEEEEcCC--CeEEEEEcCCCCcceEEEeecc---------CCceeEEEeccCC--CCeEEEEcCCCcEEEEecCC
Q 021657          102 SSAQEFCSVGDD--SCLILWDARVGTSPVIKVEKAH---------DADLHCVDWNPLD--DNLILTGSADNSVRMFDRRN  168 (309)
Q Consensus       102 ~~~~~l~s~~~d--g~i~iwd~~~~~~~~~~~~~~~---------~~~v~~~~~~~~~--~~~l~~~~~dg~i~i~d~~~  168 (309)
                      ..+.++++|+..  ..+.|||+++.+  .+..-+.-         .-.++.+.|-+ .  ...|++++.-+.+|+||.+.
T Consensus       159 ~~p~Iva~GGke~~n~lkiwdle~~~--qiw~aKNvpnD~L~LrVPvW~tdi~Fl~-g~~~~~fat~T~~hqvR~YDt~~  235 (412)
T KOG3881|consen  159 TDPYIVATGGKENINELKIWDLEQSK--QIWSAKNVPNDRLGLRVPVWITDIRFLE-GSPNYKFATITRYHQVRLYDTRH  235 (412)
T ss_pred             CCCceEecCchhcccceeeeecccce--eeeeccCCCCccccceeeeeeccceecC-CCCCceEEEEecceeEEEecCcc
Confidence            777888889988  899999998764  22221111         12467888887 6  78999999999999999996


Q ss_pred             CCCCCCCCceeeeccCCCCeeEEEEecCCCcEEEEecCCCcEEEEeCCcccccccCCCCCcCCCCceeeeecCCCcceee
Q 021657          169 LTSNGVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKVVD  248 (309)
Q Consensus       169 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~  248 (309)
                      .     .+|+..+.-...+++++...|.+.++ .+|..-|.+..||++. ++.             ....+.+-.+.|.+
T Consensus       236 q-----RRPV~~fd~~E~~is~~~l~p~gn~I-y~gn~~g~l~~FD~r~-~kl-------------~g~~~kg~tGsirs  295 (412)
T KOG3881|consen  236 Q-----RRPVAQFDFLENPISSTGLTPSGNFI-YTGNTKGQLAKFDLRG-GKL-------------LGCGLKGITGSIRS  295 (412)
T ss_pred             c-----CcceeEeccccCcceeeeecCCCcEE-EEecccchhheecccC-cee-------------eccccCCccCCcce
Confidence            4     78999999889999999999999975 5898999999999998 221             12336778899999


Q ss_pred             EEEccCCCeEEEEecCCCCCCCCCCeEEEEEccccccCChhhHhHhh
Q 021657          249 FHWNASDPWTVVSVSDDCDSTGGGGTLQIWRMSDLIYRPQDEVLAEL  295 (309)
Q Consensus       249 ~~~~~~~~~~~~s~s~d~~s~~~dg~v~vw~~~~~~~~~~~~~~~~~  295 (309)
                      +..+|..++++        ++|-|..|+|+|+.      +.+++...
T Consensus       296 ih~hp~~~~la--------s~GLDRyvRIhD~k------trkll~kv  328 (412)
T KOG3881|consen  296 IHCHPTHPVLA--------SCGLDRYVRIHDIK------TRKLLHKV  328 (412)
T ss_pred             EEEcCCCceEE--------eeccceeEEEeecc------cchhhhhh
Confidence            99999877655        66666999999999      55555443

>KOG2321 consensus WD40 repeat protein [General function prediction only]

Probab=99.73  E-value=4e-16  Score=124.08  Aligned_cols=241  Identities=17%  Similarity=0.302  Sum_probs=153.5

Q ss_pred             CCCcceEEEEECCCCCEE-EEecCCCcEEEEeCCccccccccC----CccccccCCCCceeecCCCCCCCCcccCCCCCc
Q 021657            7 HQDNAEFALAMCPTEPYV-LSGGKDKSVVLWSIQDHITSSATD----PATAKSAGSSGSIIKQSPKPGDGNDKAADGPSV   81 (309)
Q Consensus         7 H~~~~V~~~~~~~~~~~l-~t~~~dg~i~vwd~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (309)
                      |.. +-+.|..+|||+|+ |||.+--.|++||+.+......-+    ............          ..+.+-.-++.
T Consensus        50 ~p~-ast~ik~s~DGqY~lAtG~YKP~ikvydlanLSLKFERhlDae~V~feiLsDD~S----------K~v~L~~DR~I  118 (703)
T KOG2321|consen   50 MPT-ASTRIKVSPDGQYLLATGTYKPQIKVYDLANLSLKFERHLDAEVVDFEILSDDYS----------KSVFLQNDRTI  118 (703)
T ss_pred             Ccc-ccceeEecCCCcEEEEecccCCceEEEEcccceeeeeecccccceeEEEeccchh----------hheEeecCcee
Confidence            555 56899999999985 688889999999998652222111    111111111111          00111111111


Q ss_pred             Ccccccccc-----cCCeEEEEEecCCCcEEEEEcCCCeEEEEEcCCCCcceEEEeeccCCceeEEEeccCCCCeEEEEc
Q 021657           82 GPRGIYNGH-----EDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGS  156 (309)
Q Consensus        82 ~~~~~~~~~-----~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~  156 (309)
                      +.....--|     ...-.+++++..... |..++....|+=.+++.++  ....+......++++..++ ...+|++|+
T Consensus       119 efHak~G~hy~~RIP~~GRDm~y~~~scD-ly~~gsg~evYRlNLEqGr--fL~P~~~~~~~lN~v~in~-~hgLla~Gt  194 (703)
T KOG2321|consen  119 EFHAKYGRHYRTRIPKFGRDMKYHKPSCD-LYLVGSGSEVYRLNLEQGR--FLNPFETDSGELNVVSINE-EHGLLACGT  194 (703)
T ss_pred             eehhhcCeeeeeecCcCCccccccCCCcc-EEEeecCcceEEEEccccc--cccccccccccceeeeecC-ccceEEecc
Confidence            111111111     122345666644424 4444445568888999988  6777777778999999999 889999999


Q ss_pred             CCCcEEEEecCCCCCCCCCCceeeec------cCCC-----CeeEEEEecCCCcEEEEecCCCcEEEEeCCcccccccCC
Q 021657          157 ADNSVRMFDRRNLTSNGVGSPINKFE------GHSA-----AVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQG  225 (309)
Q Consensus       157 ~dg~i~i~d~~~~~~~~~~~~~~~~~------~~~~-----~v~~~~~~~~~~~l~~~~~~dg~i~iwd~~~~~~~~~~~  225 (309)
                      .+|.|.+||.|.      ...+..+.      .+.+     .|+++.|+.+|-. +++|+.+|.+.|||++...+     
T Consensus       195 ~~g~VEfwDpR~------ksrv~~l~~~~~v~s~pg~~~~~svTal~F~d~gL~-~aVGts~G~v~iyDLRa~~p-----  262 (703)
T KOG2321|consen  195 EDGVVEFWDPRD------KSRVGTLDAASSVNSHPGGDAAPSVTALKFRDDGLH-VAVGTSTGSVLIYDLRASKP-----  262 (703)
T ss_pred             cCceEEEecchh------hhhheeeecccccCCCccccccCcceEEEecCCcee-EEeeccCCcEEEEEcccCCc-----
Confidence            999999999998      44444443      2222     4999999999886 68999999999999998322     


Q ss_pred             CCCcCCCCceeeeecCCCcceeeEEEccCCCe-EEEEecCCCCCCCCCCeEEEEEccccccCChhhHhHhhhc
Q 021657          226 PRTTNYPAGLFFQHAGHRDKVVDFHWNASDPW-TVVSVSDDCDSTGGGGTLQIWRMSDLIYRPQDEVLAELEK  297 (309)
Q Consensus       226 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~-~~~s~s~d~~s~~~dg~v~vw~~~~~~~~~~~~~~~~~~~  297 (309)
                               .+..-.+..-+|..+.|.+.++. .+++...        ..++|||-.      .+++...++.
T Consensus       263 ---------l~~kdh~~e~pi~~l~~~~~~~q~~v~S~Dk--------~~~kiWd~~------~Gk~~asiEp  312 (703)
T KOG2321|consen  263 ---------LLVKDHGYELPIKKLDWQDTDQQNKVVSMDK--------RILKIWDEC------TGKPMASIEP  312 (703)
T ss_pred             ---------eeecccCCccceeeecccccCCCceEEecch--------HHhhhcccc------cCCceeeccc
Confidence                     23333445668999999876332 3433322        689999998      5666655553

>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]

Probab=99.72  E-value=1.4e-17  Score=137.70  Aligned_cols=204  Identities=20%  Similarity=0.388  Sum_probs=151.8

Q ss_pred             CcccccccccCCeEEEEEecCCCcEEEEEcCCCeEEEEEcCCCCcceEEEeeccCCceeEEEeccCCCCeEEEEcCCCcE
Q 021657           82 GPRGIYNGHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSV  161 (309)
Q Consensus        82 ~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i  161 (309)
                      +.+..+.+|...|.|+.|...| .++++|++|..++||...+..  +.....+|...|+.++.+. +..++++++.|..|
T Consensus       181 k~ikrLlgH~naVyca~fDrtg-~~Iitgsdd~lvKiwS~et~~--~lAs~rGhs~ditdlavs~-~n~~iaaaS~D~vI  256 (1113)
T KOG0644|consen  181 KNIKRLLGHRNAVYCAIFDRTG-RYIITGSDDRLVKIWSMETAR--CLASCRGHSGDITDLAVSS-NNTMIAAASNDKVI  256 (1113)
T ss_pred             HHHHHHHhhhhheeeeeecccc-ceEeecCccceeeeeeccchh--hhccCCCCccccchhccch-hhhhhhhcccCceE
Confidence            3456677999999999999998 899999999999999988887  7888899999999999998 88899999999999


Q ss_pred             EEEecCCCCCCCCCCceeeeccCCCCeeEEEEecCCCcEEEEecCCCcEEEEeCCcccccccCCCCCcCCCC-ceeee--
Q 021657          162 RMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPA-GLFFQ--  238 (309)
Q Consensus       162 ~i~d~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~-~~~~~--  238 (309)
                      ++|.+..      +.++..+.+|.+.|++|+|+|-     ++.+.||++++||.+-......  +++..... .++..  
T Consensus       257 rvWrl~~------~~pvsvLrghtgavtaiafsP~-----~sss~dgt~~~wd~r~~~~~y~--prp~~~~~~~~~~s~~  323 (1113)
T KOG0644|consen  257 RVWRLPD------GAPVSVLRGHTGAVTAIAFSPR-----ASSSDDGTCRIWDARLEPRIYV--PRPLKFTEKDLVDSIL  323 (1113)
T ss_pred             EEEecCC------CchHHHHhccccceeeeccCcc-----ccCCCCCceEeccccccccccC--CCCCCcccccceeeee
Confidence            9999999      9999999999999999999995     3778899999999982111111  11100000 00000  


Q ss_pred             --------------ecCCCcceeeEEEccCCCeEEEEecCCCC----CCCCCCeEEEEEccccccCChhhHhHhhhcccc
Q 021657          239 --------------HAGHRDKVVDFHWNASDPWTVVSVSDDCD----STGGGGTLQIWRMSDLIYRPQDEVLAELEKFKA  300 (309)
Q Consensus       239 --------------~~~~~~~v~~~~~~~~~~~~~~s~s~d~~----s~~~dg~v~vw~~~~~~~~~~~~~~~~~~~h~~  300 (309)
                                    ........-.++|.. ...++++.+.|..    ++-.+-.+++|++.      .+..+..+.+|.+
T Consensus       324 ~~~~~~~f~Tgs~d~ea~n~e~~~l~~~~-~~lif~t~ssd~~~~~~~ar~~~~~~vwnl~------~g~l~H~l~ghsd  396 (1113)
T KOG0644|consen  324 FENNGDRFLTGSRDGEARNHEFEQLAWRS-NLLIFVTRSSDLSSIVVTARNDHRLCVWNLY------TGQLLHNLMGHSD  396 (1113)
T ss_pred             ccccccccccccCCcccccchhhHhhhhc-cceEEEeccccccccceeeeeeeEeeeeecc------cchhhhhhccccc
Confidence                          000111223334433 2334444443311    24455788999999      7888999999999


Q ss_pred             eEEEeeeCC
Q 021657          301 HVISCTSKP  309 (309)
Q Consensus       301 ~v~~~~~~P  309 (309)
                      .+..+.+||
T Consensus       397 ~~yvLd~Hp  405 (1113)
T KOG0644|consen  397 EVYVLDVHP  405 (1113)
T ss_pred             ceeeeeecC
Confidence            999999998

>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]

Probab=99.72  E-value=1.9e-16  Score=124.85  Aligned_cols=166  Identities=17%  Similarity=0.325  Sum_probs=124.6

Q ss_pred             cCCeEEEEEecCCCcEEEEEcCCCeEEEEEcCCCCcceEEEeeccCCceeEEEeccCCCCeEEEEcCCCcEEEEecCCCC
Q 021657           91 EDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLT  170 (309)
Q Consensus        91 ~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~  170 (309)
                      +..|+++.|-|.++..|+.+-.+|.+.+||..-..        +-..  .+....+ ++..|.....-+      ..+  
T Consensus       219 ktsvT~ikWvpg~~~~Fl~a~~sGnlyly~~~~~~--------~~t~--p~~~~~k-~~~~f~i~t~ks------k~~--  279 (636)
T KOG2394|consen  219 KSSVTCIKWVPGSDSLFLVAHASGNLYLYDKEIVC--------GATA--PSYQALK-DGDQFAILTSKS------KKT--  279 (636)
T ss_pred             ccceEEEEEEeCCCceEEEEEecCceEEeeccccc--------cCCC--CcccccC-CCCeeEEeeeec------ccc--
Confidence            36899999999888889999999999999972111        0011  1122233 455554432211      111  


Q ss_pred             CCCCCCceeeeccCCCCeeEEEEecCCCcEEEEecCCCcEEEEeCCcccccccCCCCCcCCCCceeeeecCCCcceeeEE
Q 021657          171 SNGVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKVVDFH  250 (309)
Q Consensus       171 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~  250 (309)
                          ..++..+.-..+.|+.++|+|||++ ||+.+.||.++|||+.+               ..++..++..-+...+++
T Consensus       280 ----rNPv~~w~~~~g~in~f~FS~DG~~-LA~VSqDGfLRvF~fdt---------------~eLlg~mkSYFGGLLCvc  339 (636)
T KOG2394|consen  280 ----RNPVARWHIGEGSINEFAFSPDGKY-LATVSQDGFLRIFDFDT---------------QELLGVMKSYFGGLLCVC  339 (636)
T ss_pred             ----CCccceeEeccccccceeEcCCCce-EEEEecCceEEEeeccH---------------HHHHHHHHhhccceEEEE
Confidence                3456666656679999999999997 68999999999999998               344445555567899999


Q ss_pred             EccCCCeEEEEecCCCCCCCCCCeEEEEEccccccCChhhHhHhhhcccceEEEeeeCC
Q 021657          251 WNASDPWTVVSVSDDCDSTGGGGTLQIWRMSDLIYRPQDEVLAELEKFKAHVISCTSKP  309 (309)
Q Consensus       251 ~~~~~~~~~~s~s~d~~s~~~dg~v~vw~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~P  309 (309)
                      |+||+.+++        +||.|-.|.||.+.      ..+.+..=++|+..|..|+|.|
T Consensus       340 WSPDGKyIv--------tGGEDDLVtVwSf~------erRVVARGqGHkSWVs~VaFDp  384 (636)
T KOG2394|consen  340 WSPDGKYIV--------TGGEDDLVTVWSFE------ERRVVARGQGHKSWVSVVAFDP  384 (636)
T ss_pred             EcCCccEEE--------ecCCcceEEEEEec------cceEEEeccccccceeeEeecc
Confidence            999999877        88888999999999      7888888899999999999987

>PRK11028 6-phosphogluconolactonase; Provisional

Probab=99.72  E-value=6.9e-15  Score=117.96  Aligned_cols=213  Identities=9%  Similarity=0.132  Sum_probs=130.6

Q ss_pred             ceEEEEECCCCCEEEEe-cCCCcEEEEeCCccccccccCCccccccCCCCceeecCCCCCCCCcccCCCCCcCccccccc
Q 021657           11 AEFALAMCPTEPYVLSG-GKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNG   89 (309)
Q Consensus        11 ~V~~~~~~~~~~~l~t~-~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   89 (309)
                      ....++++|++++|+++ ..++.|.+|+++..-.                                     ....... .
T Consensus        36 ~~~~l~~spd~~~lyv~~~~~~~i~~~~~~~~g~-------------------------------------l~~~~~~-~   77 (330)
T PRK11028         36 QVQPMVISPDKRHLYVGVRPEFRVLSYRIADDGA-------------------------------------LTFAAES-P   77 (330)
T ss_pred             CCccEEECCCCCEEEEEECCCCcEEEEEECCCCc-------------------------------------eEEeeee-c
Confidence            35688999999988765 4588999999862100                                     0000101 1


Q ss_pred             ccCCeEEEEEecCCCcEEEEEcCCCeEEEEEcCCCCcc--eEEEeeccCCceeEEEeccCCCCeEE-EEcCCCcEEEEec
Q 021657           90 HEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSP--VIKVEKAHDADLHCVDWNPLDDNLIL-TGSADNSVRMFDR  166 (309)
Q Consensus        90 ~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~--~~~~~~~~~~~v~~~~~~~~~~~~l~-~~~~dg~i~i~d~  166 (309)
                      ..+....+.|+|+++.++++...++.|.+|++.+....  ..... .+.....+++++| ++++++ +...++.|.+||+
T Consensus        78 ~~~~p~~i~~~~~g~~l~v~~~~~~~v~v~~~~~~g~~~~~~~~~-~~~~~~~~~~~~p-~g~~l~v~~~~~~~v~v~d~  155 (330)
T PRK11028         78 LPGSPTHISTDHQGRFLFSASYNANCVSVSPLDKDGIPVAPIQII-EGLEGCHSANIDP-DNRTLWVPCLKEDRIRLFTL  155 (330)
T ss_pred             CCCCceEEEECCCCCEEEEEEcCCCeEEEEEECCCCCCCCceeec-cCCCcccEeEeCC-CCCEEEEeeCCCCEEEEEEE
Confidence            12245689999999544555556899999999743211  12222 2334567889999 887775 4555799999999


Q ss_pred             CCCCCCCC-CCceeeeccCCCCeeEEEEecCCCcEEEEecCCCcEEEEeCCcccccccCCCCCcCCCCceeeeecC----
Q 021657          167 RNLTSNGV-GSPINKFEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAG----  241 (309)
Q Consensus       167 ~~~~~~~~-~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~----  241 (309)
                      .+...... ........ .......++|+|++++++++...++.|.+|+++......           ..+.....    
T Consensus       156 ~~~g~l~~~~~~~~~~~-~g~~p~~~~~~pdg~~lyv~~~~~~~v~v~~~~~~~~~~-----------~~~~~~~~~p~~  223 (330)
T PRK11028        156 SDDGHLVAQEPAEVTTV-EGAGPRHMVFHPNQQYAYCVNELNSSVDVWQLKDPHGEI-----------ECVQTLDMMPAD  223 (330)
T ss_pred             CCCCcccccCCCceecC-CCCCCceEEECCCCCEEEEEecCCCEEEEEEEeCCCCCE-----------EEEEEEecCCCc
Confidence            76210000 00001122 133467899999999877666669999999997421110           01111111    


Q ss_pred             --CCcceeeEEEccCCCeEEEEecCCCCCCCCCCeEEEEEccc
Q 021657          242 --HRDKVVDFHWNASDPWTVVSVSDDCDSTGGGGTLQIWRMSD  282 (309)
Q Consensus       242 --~~~~v~~~~~~~~~~~~~~s~s~d~~s~~~dg~v~vw~~~~  282 (309)
                        +......+.++|++.+++++...       ++.|.+|++..
T Consensus       224 ~~~~~~~~~i~~~pdg~~lyv~~~~-------~~~I~v~~i~~  259 (330)
T PRK11028        224 FSDTRWAADIHITPDGRHLYACDRT-------ASLISVFSVSE  259 (330)
T ss_pred             CCCCccceeEEECCCCCEEEEecCC-------CCeEEEEEEeC
Confidence              11234568999999988875433       38999999963

>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]

Probab=99.72  E-value=4.3e-16  Score=133.93  Aligned_cols=267  Identities=14%  Similarity=0.178  Sum_probs=156.9

Q ss_pred             CcccCCCCCcceEEEEECCC-CCEEEEecCCCcEEEEeCCcccccc-ccCCccccc--------cCCCCceeecCCCCCC
Q 021657            1 MEILTGHQDNAEFALAMCPT-EPYVLSGGKDKSVVLWSIQDHITSS-ATDPATAKS--------AGSSGSIIKQSPKPGD   70 (309)
Q Consensus         1 l~~l~~H~~~~V~~~~~~~~-~~~l~t~~~dg~i~vwd~~~~~~~~-~~~~~~~~~--------~~~~~~~~~~~~~~~~   70 (309)
                      |..|..|.. .|..++.++. +.+|+|||.||+|++||..+.+... .........        ...-.....++.+..+
T Consensus      1041 VAhL~Ehs~-~v~k~a~s~~~~s~FvsgS~DGtVKvW~~~k~~~~~~s~rS~ltys~~~sr~~~vt~~~~~~~~Av~t~D 1119 (1431)
T KOG1240|consen 1041 VAHLHEHSS-AVIKLAVSSEHTSLFVSGSDDGTVKVWNLRKLEGEGGSARSELTYSPEGSRVEKVTMCGNGDQFAVSTKD 1119 (1431)
T ss_pred             eehhhhccc-cccceeecCCCCceEEEecCCceEEEeeehhhhcCcceeeeeEEEeccCCceEEEEeccCCCeEEEEcCC
Confidence            356778998 6778888775 5999999999999999998653321 111111111        0011111122223556


Q ss_pred             CCcccCCCCCcC-------ccccccc-ccCCeEEE-EEecCCCc-EEEEEcCCCeEEEEEcCCCCcceEEEeeccCCcee
Q 021657           71 GNDKAADGPSVG-------PRGIYNG-HEDTVEDV-TFCPSSAQ-EFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLH  140 (309)
Q Consensus        71 ~~~~~~~~~~~~-------~~~~~~~-~~~~v~~~-~~~~~~~~-~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~  140 (309)
                      |.+.+.+.....       ....... ..+.+.+| +|...... .++.+...+.|..||+++...--........+.|+
T Consensus      1120 G~v~~~~id~~~~~~~~~~~~ri~n~~~~g~vv~m~a~~~~~~S~~lvy~T~~~~iv~~D~r~~~~~w~lk~~~~hG~vT 1199 (1431)
T KOG1240|consen 1120 GSVRVLRIDHYNVSKRVATQVRIPNLKKDGVVVSMHAFTAIVQSHVLVYATDLSRIVSWDTRMRHDAWRLKNQLRHGLVT 1199 (1431)
T ss_pred             CeEEEEEccccccccceeeeeecccccCCCceEEeecccccccceeEEEEEeccceEEecchhhhhHHhhhcCcccccee
Confidence            666655544311       1111111 12334444 34333223 68888888999999998765322233334557899


Q ss_pred             EEEeccCCCCeEEEEcCCCcEEEEecCCCCCCCCCCceeeec-cCCCCeeEEEEecCCC---cEEEEec-CCCcEEEEeC
Q 021657          141 CVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFE-GHSAAVLCVQWSPDKS---SVFGSSA-EDGLLNIWDY  215 (309)
Q Consensus       141 ~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~-~~~~~v~~~~~~~~~~---~l~~~~~-~dg~i~iwd~  215 (309)
                      +++.+| .++++++|+..|.+.+||+|-      ..++..+. .+..+++.+..+|-.+   ..+.+++ ..+.|.+|++
T Consensus      1200 Si~idp-~~~WlviGts~G~l~lWDLRF------~~~i~sw~~P~~~~i~~v~~~~~~~~~S~~vs~~~~~~nevs~wn~ 1272 (1431)
T KOG1240|consen 1200 SIVIDP-WCNWLVIGTSRGQLVLWDLRF------RVPILSWEHPARAPIRHVWLCPTYPQESVSVSAGSSSNNEVSTWNM 1272 (1431)
T ss_pred             EEEecC-CceEEEEecCCceEEEEEeec------CceeecccCcccCCcceEEeeccCCCCceEEEecccCCCceeeeec
Confidence            999999 999999999999999999998      67777664 3456788888876443   3444444 5788999999


Q ss_pred             CcccccccCCCCCcCCCCceee----eecCCCcceeeEEEccCCCeEEEEecCCCCCCCCCCeEEEEEcccc
Q 021657          216 EKVGKKVEQGPRTTNYPAGLFF----QHAGHRDKVVDFHWNASDPWTVVSVSDDCDSTGGGGTLQIWRMSDL  283 (309)
Q Consensus       216 ~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~v~~~~~~~~~~~~~~s~s~d~~s~~~dg~v~vw~~~~~  283 (309)
                      .+.................-..    ....+.-......+...++.++        +||.|+.|+.||...+
T Consensus      1273 ~~g~~~~vl~~s~~~p~ls~~~Ps~~~~kp~~~~~~~~~~~~~~~~~l--------tggsd~kIR~wD~~~p 1336 (1431)
T KOG1240|consen 1273 ETGLRQTVLWASDGAPILSYALPSNDARKPDSLAGISCGVCEKNGFLL--------TGGSDMKIRKWDPTRP 1336 (1431)
T ss_pred             ccCcceEEEEcCCCCcchhhhcccccCCCCCcccceeeecccCCceee--------ecCCccceeeccCCCc
Confidence            8832221111110000000000    0001222233344444455556        7788899999998754

>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]

Probab=99.71  E-value=2.4e-14  Score=108.18  Aligned_cols=135  Identities=17%  Similarity=0.266  Sum_probs=104.1

Q ss_pred             ccCCCCCcCcccccc---cccCCeEEEEEecCCCcEEEE-E-cCCCeEEEEEcCCCCcceEEEeeccCCceeEEEeccCC
Q 021657           74 KAADGPSVGPRGIYN---GHEDTVEDVTFCPSSAQEFCS-V-GDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLD  148 (309)
Q Consensus        74 ~~~~~~~~~~~~~~~---~~~~~v~~~~~~~~~~~~l~s-~-~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~  148 (309)
                      +++++..++.+.++.   .+...+.++.+++.+ .+++- + ...|.|.|||+.+-+  ....+..|++++-+++|++ +
T Consensus       109 yIydI~~MklLhTI~t~~~n~~gl~AlS~n~~n-~ylAyp~s~t~GdV~l~d~~nl~--~v~~I~aH~~~lAalafs~-~  184 (391)
T KOG2110|consen  109 YIYDIKDMKLLHTIETTPPNPKGLCALSPNNAN-CYLAYPGSTTSGDVVLFDTINLQ--PVNTINAHKGPLAALAFSP-D  184 (391)
T ss_pred             EEEecccceeehhhhccCCCccceEeeccCCCC-ceEEecCCCCCceEEEEEcccce--eeeEEEecCCceeEEEECC-C
Confidence            333334555555443   345557767776665 55553 2 246899999998877  6788889999999999999 9


Q ss_pred             CCeEEEEcCCCc-EEEEecCCCCCCCCCCceeeeccCC--CCeeEEEEecCCCcEEEEecCCCcEEEEeCCccc
Q 021657          149 DNLILTGSADNS-VRMFDRRNLTSNGVGSPINKFEGHS--AAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVG  219 (309)
Q Consensus       149 ~~~l~~~~~dg~-i~i~d~~~~~~~~~~~~~~~~~~~~--~~v~~~~~~~~~~~l~~~~~~dg~i~iwd~~~~~  219 (309)
                      |.+||+++..|+ |||+.+.+      ++.+.+|....  ..|.+++|+|++.+ |++.+..++|++|.+....
T Consensus       185 G~llATASeKGTVIRVf~v~~------G~kl~eFRRG~~~~~IySL~Fs~ds~~-L~~sS~TeTVHiFKL~~~~  251 (391)
T KOG2110|consen  185 GTLLATASEKGTVIRVFSVPE------GQKLYEFRRGTYPVSIYSLSFSPDSQF-LAASSNTETVHIFKLEKVS  251 (391)
T ss_pred             CCEEEEeccCceEEEEEEcCC------ccEeeeeeCCceeeEEEEEEECCCCCe-EEEecCCCeEEEEEecccc
Confidence            999999999886 78999988      88998887443  45889999999996 5677888999999998743

>KOG2139 consensus WD40 repeat protein [General function prediction only]

Probab=99.71  E-value=5.6e-15  Score=111.37  Aligned_cols=230  Identities=14%  Similarity=0.187  Sum_probs=143.4

Q ss_pred             ceEEEEECCCC-CEEEEecCCCcEEEEeCCccccccccCCccccccCCCCceeecCCCCCCCCcccCCCCCcCc--cccc
Q 021657           11 AEFALAMCPTE-PYVLSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGP--RGIY   87 (309)
Q Consensus        11 ~V~~~~~~~~~-~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~   87 (309)
                      -|+|++|-|.+ .-|+.|.. +-|.+|.............                            .-+..+  +..-
T Consensus       142 nvtclawRPlsaselavgCr-~gIciW~~s~tln~~r~~~----------------------------~~s~~~~qvl~~  192 (445)
T KOG2139|consen  142 NVTCLAWRPLSASELAVGCR-AGICIWSDSRTLNANRNIR----------------------------MMSTHHLQVLQD  192 (445)
T ss_pred             ceeEEEeccCCcceeeeeec-ceeEEEEcCcccccccccc----------------------------cccccchhheeC
Confidence            58999999954 55666665 5688999764311111000                            001111  1222


Q ss_pred             ccccCCeEEEEEecCCCcEEEEEc-CCCeEEEEEcCCCCcceEEEeeccCCceeEEEeccCCCCeEEEEcCCCcEEEEec
Q 021657           88 NGHEDTVEDVTFCPSSAQEFCSVG-DDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDR  166 (309)
Q Consensus        88 ~~~~~~v~~~~~~~~~~~~l~s~~-~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~  166 (309)
                      .+| .+|++|+|++|| ..+++++ .|..|.|||..++......  ....+.++-+.|+| ++.+|+++..|+..++|..
T Consensus       193 pgh-~pVtsmqwn~dg-t~l~tAS~gsssi~iWdpdtg~~~pL~--~~glgg~slLkwSP-dgd~lfaAt~davfrlw~e  267 (445)
T KOG2139|consen  193 PGH-NPVTSMQWNEDG-TILVTASFGSSSIMIWDPDTGQKIPLI--PKGLGGFSLLKWSP-DGDVLFAATCDAVFRLWQE  267 (445)
T ss_pred             CCC-ceeeEEEEcCCC-CEEeecccCcceEEEEcCCCCCccccc--ccCCCceeeEEEcC-CCCEEEEecccceeeeehh
Confidence            345 689999999999 6677666 5788999999998843333  23456788999999 9999999999999999965


Q ss_pred             CCCCCCCCCCceeeeccCCCCeeEEEEecCCCcEEEEecCCCcEEEEeCCcccccccCCCCCcCCCCceeeee------c
Q 021657          167 RNLTSNGVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQH------A  240 (309)
Q Consensus       167 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~------~  240 (309)
                      ...     ....+ .....+.|...+|+|+|++||.+.+.  .-++|.+...++..............++..+      .
T Consensus       268 ~q~-----wt~er-w~lgsgrvqtacWspcGsfLLf~~sg--sp~lysl~f~~~~~~~~~~~~~k~~lliaDL~e~ti~a  339 (445)
T KOG2139|consen  268 NQS-----WTKER-WILGSGRVQTACWSPCGSFLLFACSG--SPRLYSLTFDGEDSVFLRPQSIKRVLLIADLQEVTICA  339 (445)
T ss_pred             ccc-----ceecc-eeccCCceeeeeecCCCCEEEEEEcC--CceEEEEeecCCCccccCcccceeeeeeccchhhhhhc
Confidence            542     33222 22345589999999999998877764  4556776654444332211111111111111      1


Q ss_pred             C---CCcceeeEEEccCCCeEEEEecCCCCCCCCCCeEEEEEccc
Q 021657          241 G---HRDKVVDFHWNASDPWTVVSVSDDCDSTGGGGTLQIWRMSD  282 (309)
Q Consensus       241 ~---~~~~v~~~~~~~~~~~~~~s~s~d~~s~~~dg~v~vw~~~~  282 (309)
                      +   -.+++.+++|.|.|.+++++--...-.--.-..|.+||.+.
T Consensus       340 g~~l~cgeaq~lawDpsGeyLav~fKg~~~v~~~k~~i~~fdtr~  384 (445)
T KOG2139|consen  340 GQRLCCGEAQCLAWDPSGEYLAVIFKGQSFVLLCKLHISRFDTRK  384 (445)
T ss_pred             CcccccCccceeeECCCCCEEEEEEcCCchhhhhhhhhhhhcccc
Confidence            1   13578899999999998875432100011124566777764

>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins

Probab=99.71  E-value=2.7e-15  Score=109.57  Aligned_cols=114  Identities=21%  Similarity=0.432  Sum_probs=86.7

Q ss_pred             ccCCeEEEEEecCCCcEEEE-EcCCCeEEEEEcCCCCcceEEEeeccCCceeEEEeccCCCCeEEEEcCC---CcEEEEe
Q 021657           90 HEDTVEDVTFCPSSAQEFCS-VGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSAD---NSVRMFD  165 (309)
Q Consensus        90 ~~~~v~~~~~~~~~~~~l~s-~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d---g~i~i~d  165 (309)
                      ..++|.+++|+|++..++++ |..++.|.+||++ .+  .+..+  +...+..+.|+| +|+++++++.+   |.|.+||
T Consensus        58 ~~~~I~~~~WsP~g~~favi~g~~~~~v~lyd~~-~~--~i~~~--~~~~~n~i~wsP-~G~~l~~~g~~n~~G~l~~wd  131 (194)
T PF08662_consen   58 KEGPIHDVAWSPNGNEFAVIYGSMPAKVTLYDVK-GK--KIFSF--GTQPRNTISWSP-DGRFLVLAGFGNLNGDLEFWD  131 (194)
T ss_pred             CCCceEEEEECcCCCEEEEEEccCCcccEEEcCc-cc--EeEee--cCCCceEEEECC-CCCEEEEEEccCCCcEEEEEE
Confidence            34579999999999444333 4467899999996 33  34444  356778999999 99999998754   6799999


Q ss_pred             cCCCCCCCCCCceeeeccCCCCeeEEEEecCCCcEEEEec-----CCCcEEEEeCCc
Q 021657          166 RRNLTSNGVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSA-----EDGLLNIWDYEK  217 (309)
Q Consensus       166 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-----~dg~i~iwd~~~  217 (309)
                      .++      .+.+...+.  ..++.++|+|+|++++.+.+     .|+.++||++..
T Consensus       132 ~~~------~~~i~~~~~--~~~t~~~WsPdGr~~~ta~t~~r~~~dng~~Iw~~~G  180 (194)
T PF08662_consen  132 VRK------KKKISTFEH--SDATDVEWSPDGRYLATATTSPRLRVDNGFKIWSFQG  180 (194)
T ss_pred             CCC------CEEeecccc--CcEEEEEEcCCCCEEEEEEeccceeccccEEEEEecC
Confidence            998      777877763  34789999999998765444     378899999864

>KOG4227 consensus WD40 repeat protein [General function prediction only]

Probab=99.71  E-value=1.1e-15  Score=116.50  Aligned_cols=170  Identities=13%  Similarity=0.213  Sum_probs=133.7

Q ss_pred             cccccccCCeEEEEEecCCCcEEEEEcCCCeEEEEEcCCCC-----cceEEEeeccCCceeEEEeccCCCCeEEEEcCCC
Q 021657           85 GIYNGHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGT-----SPVIKVEKAHDADLHCVDWNPLDDNLILTGSADN  159 (309)
Q Consensus        85 ~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~-----~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg  159 (309)
                      +.+.+|.+.|+++.|+.++ ++|++|+.|..+++|++...-     +++...-..|...|.|++|.. ...++++|..++
T Consensus        50 KD~~~H~GCiNAlqFS~N~-~~L~SGGDD~~~~~W~~de~~~~k~~KPI~~~~~~H~SNIF~L~F~~-~N~~~~SG~~~~  127 (609)
T KOG4227|consen   50 KDVREHTGCINALQFSHND-RFLASGGDDMHGRVWNVDELMVRKTPKPIGVMEHPHRSNIFSLEFDL-ENRFLYSGERWG  127 (609)
T ss_pred             hhhhhhccccceeeeccCC-eEEeecCCcceeeeechHHHHhhcCCCCceeccCccccceEEEEEcc-CCeeEecCCCcc
Confidence            4567899999999999997 999999999999999985421     122223345668999999998 888999999999


Q ss_pred             cEEEEecCCCCCCCCCCceeeecc--CCCCeeEEEEecCCCcEEEEecCCCcEEEEeCCcccccccCCCCCcCCCCceee
Q 021657          160 SVRMFDRRNLTSNGVGSPINKFEG--HSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFF  237 (309)
Q Consensus       160 ~i~i~d~~~~~~~~~~~~~~~~~~--~~~~v~~~~~~~~~~~l~~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~  237 (309)
                      +|...|+.+      .+.+..+..  ..+.|+.+..+|... +|++.+.++.|.+||.+....+           .. .+
T Consensus       128 ~VI~HDiEt------~qsi~V~~~~~~~~~VY~m~~~P~DN-~~~~~t~~~~V~~~D~Rd~~~~-----------~~-~~  188 (609)
T KOG4227|consen  128 TVIKHDIET------KQSIYVANENNNRGDVYHMDQHPTDN-TLIVVTRAKLVSFIDNRDRQNP-----------IS-LV  188 (609)
T ss_pred             eeEeeeccc------ceeeeeecccCcccceeecccCCCCc-eEEEEecCceEEEEeccCCCCC-----------Cc-ee
Confidence            999999998      666665542  345899999999876 5779999999999999973222           11 22


Q ss_pred             eecCCCcceeeEEEccCCCeEEEEecCCCCCCCCCCeEEEEEccc
Q 021657          238 QHAGHRDKVVDFHWNASDPWTVVSVSDDCDSTGGGGTLQIWRMSD  282 (309)
Q Consensus       238 ~~~~~~~~v~~~~~~~~~~~~~~s~s~d~~s~~~dg~v~vw~~~~  282 (309)
                      ...........+.|+|..+.|+++.+..       +-+.+||.+.
T Consensus       189 ~~AN~~~~F~t~~F~P~~P~Li~~~~~~-------~G~~~~D~R~  226 (609)
T KOG4227|consen  189 LPANSGKNFYTAEFHPETPALILVNSET-------GGPNVFDRRM  226 (609)
T ss_pred             eecCCCccceeeeecCCCceeEEecccc-------CCCCceeecc
Confidence            2233445678899999999999987776       8899999985

>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]

Probab=99.70  E-value=1.3e-15  Score=129.32  Aligned_cols=248  Identities=12%  Similarity=0.161  Sum_probs=158.6

Q ss_pred             ceEEEEECC--CCCEEEEecCCCcEEEEeCCccc-----cccccCCc--cccccCCCCceeecC-------CCCCCCCcc
Q 021657           11 AEFALAMCP--TEPYVLSGGKDKSVVLWSIQDHI-----TSSATDPA--TAKSAGSSGSIIKQS-------PKPGDGNDK   74 (309)
Q Consensus        11 ~V~~~~~~~--~~~~l~t~~~dg~i~vwd~~~~~-----~~~~~~~~--~~~~~~~~~~~~~~~-------~~~~~~~~~   74 (309)
                      .|+.+.+-.  |..++++|+.||.||||+--...     ........  ......+.+.+..+-       ....-..++
T Consensus      1111 ~Vs~l~liNe~D~aLlLtas~dGvIRIwk~y~~~~~~~eLVTaw~~Ls~~~~~~r~~~~v~dWqQ~~G~Ll~tGd~r~IR 1190 (1387)
T KOG1517|consen 1111 RVSDLELINEQDDALLLTASSDGVIRIWKDYADKWKKPELVTAWSSLSDQLPGARGTGLVVDWQQQSGHLLVTGDVRSIR 1190 (1387)
T ss_pred             ccceeeeecccchhheeeeccCceEEEecccccccCCceeEEeeccccccCccCCCCCeeeehhhhCCeEEecCCeeEEE
Confidence            477777754  45689999999999999843221     11111111  011111112111111       112246788


Q ss_pred             cCCCCCcCcccccc-cccCCeEEEEEecCCCcEEEEEcCCCeEEEEEcCCCCcc-eEEEeeccCCc--eeEEEeccCCCC
Q 021657           75 AADGPSVGPRGIYN-GHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSP-VIKVEKAHDAD--LHCVDWNPLDDN  150 (309)
Q Consensus        75 ~~~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~-~~~~~~~~~~~--v~~~~~~~~~~~  150 (309)
                      +||......+..+. +....|+++.-+..+++++++|..||.|++||.+..... .+...+.|...  |..+.+.+ .|-
T Consensus      1191 IWDa~~E~~~~diP~~s~t~vTaLS~~~~~gn~i~AGfaDGsvRvyD~R~a~~ds~v~~~R~h~~~~~Iv~~slq~-~G~ 1269 (1387)
T KOG1517|consen 1191 IWDAHKEQVVADIPYGSSTLVTALSADLVHGNIIAAGFADGSVRVYDRRMAPPDSLVCVYREHNDVEPIVHLSLQR-QGL 1269 (1387)
T ss_pred             EEecccceeEeecccCCCccceeecccccCCceEEEeecCCceEEeecccCCccccceeecccCCcccceeEEeec-CCC
Confidence            99988877666554 344567777766555589999999999999999865421 34556678776  99999988 554


Q ss_pred             -eEEEEcCCCcEEEEecCCCCCCCCCCceeeeccC---CCCeeEEEEecCCCcEEEEecCCCcEEEEeCCcccccccCCC
Q 021657          151 -LILTGSADNSVRMFDRRNLTSNGVGSPINKFEGH---SAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGP  226 (309)
Q Consensus       151 -~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~---~~~v~~~~~~~~~~~l~~~~~~dg~i~iwd~~~~~~~~~~~~  226 (309)
                       .|++|+.+|.|++||+|....    ....++..|   .+..+++..+++.+ ++|+|+. +.|+||++.......-  .
T Consensus      1270 ~elvSgs~~G~I~~~DlR~~~~----e~~~~iv~~~~yGs~lTal~VH~hap-iiAsGs~-q~ikIy~~~G~~l~~~--k 1341 (1387)
T KOG1517|consen 1270 GELVSGSQDGDIQLLDLRMSSK----ETFLTIVAHWEYGSALTALTVHEHAP-IIASGSA-QLIKIYSLSGEQLNII--K 1341 (1387)
T ss_pred             cceeeeccCCeEEEEecccCcc----cccceeeeccccCccceeeeeccCCC-eeeecCc-ceEEEEecChhhhccc--c
Confidence             599999999999999998421    222222222   23589999999998 6888887 9999999976221110  0


Q ss_pred             CCcCCCCceeeeecCCCcceeeEEEccCCCeEEEEecCCCCCCCCCCeEEEEEccc
Q 021657          227 RTTNYPAGLFFQHAGHRDKVVDFHWNASDPWTVVSVSDDCDSTGGGGTLQIWRMSD  282 (309)
Q Consensus       227 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~s~d~~s~~~dg~v~vw~~~~  282 (309)
                      .    ....+   .-....+.+++|+|... ++|       .|..|..|.||...+
T Consensus      1342 ~----n~~F~---~q~~gs~scL~FHP~~~-llA-------aG~~Ds~V~iYs~~k 1382 (1387)
T KOG1517|consen 1342 Y----NPGFM---GQRIGSVSCLAFHPHRL-LLA-------AGSADSTVSIYSCEK 1382 (1387)
T ss_pred             c----Ccccc---cCcCCCcceeeecchhH-hhh-------hccCCceEEEeecCC
Confidence            0    00011   11234569999999655 455       444559999999873

>KOG1963 consensus WD40 repeat protein [General function prediction only]

Probab=99.69  E-value=8.9e-15  Score=121.82  Aligned_cols=249  Identities=14%  Similarity=0.195  Sum_probs=161.0

Q ss_pred             cccCCCCCcceEEEEECCCC---CEEEEecCCCcEEEEeCCccccccccCCcccc--------ccCCCCceeecCC----
Q 021657            2 EILTGHQDNAEFALAMCPTE---PYVLSGGKDKSVVLWSIQDHITSSATDPATAK--------SAGSSGSIIKQSP----   66 (309)
Q Consensus         2 ~~l~~H~~~~V~~~~~~~~~---~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~----   66 (309)
                      +.|.+|.. +++.+.+.|..   .++++++.||.|++||...+.....+......        ....... .....    
T Consensus        51 ~~l~~~~a-~l~s~~~~~~~~~~~~~~~~sl~G~I~vwd~~~~~Llkt~~~~~~v~~~~~~~~~a~~s~~-~~~s~~~~~  128 (792)
T KOG1963|consen   51 TSLEDHTA-PLTSVIVLPSSENANYLIVCSLDGTIRVWDWSDGELLKTFDNNLPVHALVYKPAQADISAN-VYVSVEDYS  128 (792)
T ss_pred             hhcccccC-ccceeeecCCCccceEEEEEecCccEEEecCCCcEEEEEEecCCceeEEEechhHhCccce-eEeecccce
Confidence            56889999 89999999864   46789999999999999887433322211110        0000000 00000    


Q ss_pred             ------CCCCCCcccCC--CCCcCcccccccccCCeEEEEEecCCCcEEEEEcCCCeEEEEEcCCCCcce--EEEeeccC
Q 021657           67 ------KPGDGNDKAAD--GPSVGPRGIYNGHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPV--IKVEKAHD  136 (309)
Q Consensus        67 ------~~~~~~~~~~~--~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~--~~~~~~~~  136 (309)
                            .......+-..  .........+.+|.. -..+.+++.+ .+.. ...+..+.+|+..+..+..  ...-..|.
T Consensus       129 ~~~~~s~~~~~q~~~~~~~t~~~~~~d~~~~~~~-~~~I~~~~~g-e~~~-i~~~~~~~~~~v~~~~~~~~~~~~~~~Ht  205 (792)
T KOG1963|consen  129 ILTTFSKKLSKQSSRFVLATFDSAKGDFLKEHQE-PKSIVDNNSG-EFKG-IVHMCKIHIYFVPKHTKHTSSRDITVHHT  205 (792)
T ss_pred             eeeecccccccceeeeEeeeccccchhhhhhhcC-CccEEEcCCc-eEEE-EEEeeeEEEEEecccceeeccchhhhhhc
Confidence                  00001111111  111112222333433 4567788877 5443 3456679999987744111  11223566


Q ss_pred             CceeEEEeccCCCCeEEEEcCCCcEEEEecCCCCCCCCCCceeeeccCCCCeeEEEEecCCCcEEEEecCCCcEEEEeCC
Q 021657          137 ADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYE  216 (309)
Q Consensus       137 ~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~dg~i~iwd~~  216 (309)
                      ..+++.+++| +++++++|..||.|.+|.--..  .........+..|...|++++|+++|.+|+ +|+..|.+.+|.+.
T Consensus       206 f~~t~~~~sp-n~~~~Aa~d~dGrI~vw~d~~~--~~~~~t~t~lHWH~~~V~~L~fS~~G~~Ll-SGG~E~VLv~Wq~~  281 (792)
T KOG1963|consen  206 FNITCVALSP-NERYLAAGDSDGRILVWRDFGS--SDDSETCTLLHWHHDEVNSLSFSSDGAYLL-SGGREGVLVLWQLE  281 (792)
T ss_pred             ccceeEEecc-ccceEEEeccCCcEEEEecccc--ccccccceEEEecccccceeEEecCCceEe-ecccceEEEEEeec
Confidence            7799999999 9999999999999999953320  011455677888999999999999999865 99999999999999


Q ss_pred             cccccccCCCCCcCCCCceeeeecCCCcceeeEEEccCCCeEEEEecCCCCCCCCCCeEEEEEcccc
Q 021657          217 KVGKKVEQGPRTTNYPAGLFFQHAGHRDKVVDFHWNASDPWTVVSVSDDCDSTGGGGTLQIWRMSDL  283 (309)
Q Consensus       217 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~s~d~~s~~~dg~v~vw~~~~~  283 (309)
                      +.++.                -+.--.++|..+.++|++....+...        |+.|.+-...++
T Consensus       282 T~~kq----------------fLPRLgs~I~~i~vS~ds~~~sl~~~--------DNqI~li~~~dl  324 (792)
T KOG1963|consen  282 TGKKQ----------------FLPRLGSPILHIVVSPDSDLYSLVLE--------DNQIHLIKASDL  324 (792)
T ss_pred             CCCcc----------------cccccCCeeEEEEEcCCCCeEEEEec--------CceEEEEeccch
Confidence            84422                12334578999999999987775444        479999998754

>PRK00178 tolB translocation protein TolB; Provisional

Probab=99.67  E-value=5.4e-14  Score=116.88  Aligned_cols=224  Identities=11%  Similarity=0.089  Sum_probs=134.2

Q ss_pred             cCCCCCcceEEEEECCCCCEEEEecCC---CcEEEEeCCccccccccCCccccccCCCCceeecCCCCCCCCcccCCCCC
Q 021657            4 LTGHQDNAEFALAMCPTEPYVLSGGKD---KSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPS   80 (309)
Q Consensus         4 l~~H~~~~V~~~~~~~~~~~l~t~~~d---g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (309)
                      +..|.. .+....|+|||+.|+..+.+   ..|.+||+.++...                                    
T Consensus       194 l~~~~~-~~~~p~wSpDG~~la~~s~~~~~~~l~~~~l~~g~~~------------------------------------  236 (430)
T PRK00178        194 LLQSRE-PILSPRWSPDGKRIAYVSFEQKRPRIFVQNLDTGRRE------------------------------------  236 (430)
T ss_pred             EecCCC-ceeeeeECCCCCEEEEEEcCCCCCEEEEEECCCCCEE------------------------------------
Confidence            444555 67889999999988765543   35888888753111                                    


Q ss_pred             cCcccccccccCCeEEEEEecCCCcEEEEEcCCC--eEEEEEcCCCCcceEEEeeccCCceeEEEeccCCCCeEEEEc-C
Q 021657           81 VGPRGIYNGHEDTVEDVTFCPSSAQEFCSVGDDS--CLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGS-A  157 (309)
Q Consensus        81 ~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg--~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~-~  157 (309)
                           .+....+.+....|+|+|..++++...+|  .|.+||+.+++   ...+..+........|+| +++.++..+ .
T Consensus       237 -----~l~~~~g~~~~~~~SpDG~~la~~~~~~g~~~Iy~~d~~~~~---~~~lt~~~~~~~~~~~sp-Dg~~i~f~s~~  307 (430)
T PRK00178        237 -----QITNFEGLNGAPAWSPDGSKLAFVLSKDGNPEIYVMDLASRQ---LSRVTNHPAIDTEPFWGK-DGRTLYFTSDR  307 (430)
T ss_pred             -----EccCCCCCcCCeEECCCCCEEEEEEccCCCceEEEEECCCCC---eEEcccCCCCcCCeEECC-CCCEEEEEECC
Confidence                 11112233446899999955555665555  68888988776   233444555667789999 887666554 3


Q ss_pred             CC--cEEEEecCCCCCCCCCCceeeeccCCCCeeEEEEecCCCcEEEEecCCC--cEEEEeCCcccccccCCCCCcCCCC
Q 021657          158 DN--SVRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAEDG--LLNIWDYEKVGKKVEQGPRTTNYPA  233 (309)
Q Consensus       158 dg--~i~i~d~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~dg--~i~iwd~~~~~~~~~~~~~~~~~~~  233 (309)
                      +|  .|+++|+.+      ++. ..+...........|+|+|++++.+...++  .|.+||+... +..           
T Consensus       308 ~g~~~iy~~d~~~------g~~-~~lt~~~~~~~~~~~Spdg~~i~~~~~~~~~~~l~~~dl~tg-~~~-----------  368 (430)
T PRK00178        308 GGKPQIYKVNVNG------GRA-ERVTFVGNYNARPRLSADGKTLVMVHRQDGNFHVAAQDLQRG-SVR-----------  368 (430)
T ss_pred             CCCceEEEEECCC------CCE-EEeecCCCCccceEECCCCCEEEEEEccCCceEEEEEECCCC-CEE-----------
Confidence            44  577777765      432 222212223345789999998765554444  4777887652 111           


Q ss_pred             ceeeeecCCCcceeeEEEccCCCeEEEEecCCCCCCCCCCeEEEEEccccccCChhhHhHhhhcccceEEEeeeCC
Q 021657          234 GLFFQHAGHRDKVVDFHWNASDPWTVVSVSDDCDSTGGGGTLQIWRMSDLIYRPQDEVLAELEKFKAHVISCTSKP  309 (309)
Q Consensus       234 ~~~~~~~~~~~~v~~~~~~~~~~~~~~s~s~d~~s~~~dg~v~vw~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~P  309 (309)
                       .+.    +........|+|++..++.+...+     ....|.++++.       +.....+..+.+.+...+|+|
T Consensus       369 -~lt----~~~~~~~p~~spdg~~i~~~~~~~-----g~~~l~~~~~~-------g~~~~~l~~~~g~~~~p~ws~  427 (430)
T PRK00178        369 -ILT----DTSLDESPSVAPNGTMLIYATRQQ-----GRGVLMLVSIN-------GRVRLPLPTAQGEVREPSWSP  427 (430)
T ss_pred             -Ecc----CCCCCCCceECCCCCEEEEEEecC-----CceEEEEEECC-------CCceEECcCCCCCcCCCccCC
Confidence             111    111223468999999887765432     12456666665       222334444556677777876

>KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown]

Probab=99.66  E-value=1.2e-14  Score=108.93  Aligned_cols=209  Identities=20%  Similarity=0.350  Sum_probs=136.9

Q ss_pred             CcccCCCCCcceEEEEECCCCCEEEEecCCCcEEEEeCCcc-cccc---ccCCccccccCCCCceeecCCCCCCCCcc--
Q 021657            1 MEILTGHQDNAEFALAMCPTEPYVLSGGKDKSVVLWSIQDH-ITSS---ATDPATAKSAGSSGSIIKQSPKPGDGNDK--   74 (309)
Q Consensus         1 l~~l~~H~~~~V~~~~~~~~~~~l~t~~~dg~i~vwd~~~~-~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--   74 (309)
                      ++.++||.+ .|+....-|-.+-+++.+.|.++|||--.+. ....   ...+..............+..+...+.+.  
T Consensus        17 l~~~eG~~d-~vn~~~l~~~e~gv~~~s~drtvrv~lkrds~q~wpsI~~~mP~~~~~~~y~~e~~~L~vg~~ngtvtef   95 (404)
T KOG1409|consen   17 LSKIEGSQD-DVNAAILIPKEEGVISVSEDRTVRVWLKRDSGQYWPSIYHYMPSPCSAMEYVSESRRLYVGQDNGTVTEF   95 (404)
T ss_pred             hhhhcCchh-hhhhheeccCCCCeEEccccceeeeEEeccccccCchhhhhCCCCceEeeeeccceEEEEEEecceEEEE
Confidence            357889999 8899888888888999999999999975543 1111   11111111111111111111111111111  


Q ss_pred             --cCCCCCcCcccccccccCCeEEEEEecCCCcEEEEEcCCCeEE-----------------------------------
Q 021657           75 --AADGPSVGPRGIYNGHEDTVEDVTFCPSSAQEFCSVGDDSCLI-----------------------------------  117 (309)
Q Consensus        75 --~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~-----------------------------------  117 (309)
                        .-+.+.....+....|...|..+-|+... ..+++.+.|..+.                                   
T Consensus        96 s~sedfnkm~~~r~~~~h~~~v~~~if~~~~-e~V~s~~~dk~~~~hc~e~~~~lg~Y~~~~~~t~~~~d~~~~fvGd~~  174 (404)
T KOG1409|consen   96 ALSEDFNKMTFLKDYLAHQARVSAIVFSLTH-EWVLSTGKDKQFAWHCTESGNRLGGYNFETPASALQFDALYAFVGDHS  174 (404)
T ss_pred             EhhhhhhhcchhhhhhhhhcceeeEEecCCc-eeEEEeccccceEEEeeccCCcccceEeeccCCCCceeeEEEEecccc
Confidence              11233444555666788888888777655 4566666554332                                   


Q ss_pred             ----EEEcCCCCcceEEEeeccCCceeEEEeccCCCCeEEEEcCCCcEEEEecCCCCCCCCCCceeeeccCCCCeeEEEE
Q 021657          118 ----LWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQW  193 (309)
Q Consensus       118 ----iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~v~~~~~  193 (309)
                          +-.+.......+..+.+|.+++.+++|.| ....|++|..|..+.+||+.-.     ......+.+|...|..+..
T Consensus       175 gqvt~lr~~~~~~~~i~~~~~h~~~~~~l~Wd~-~~~~LfSg~~d~~vi~wdigg~-----~g~~~el~gh~~kV~~l~~  248 (404)
T KOG1409|consen  175 GQITMLKLEQNGCQLITTFNGHTGEVTCLKWDP-GQRLLFSGASDHSVIMWDIGGR-----KGTAYELQGHNDKVQALSY  248 (404)
T ss_pred             cceEEEEEeecCCceEEEEcCcccceEEEEEcC-CCcEEEeccccCceEEEeccCC-----cceeeeeccchhhhhhhhh
Confidence                11111122235667789999999999999 8999999999999999999863     3456677889999999988


Q ss_pred             ecCCCcEEEEecCCCcEEEEeCCcc
Q 021657          194 SPDKSSVFGSSAEDGLLNIWDYEKV  218 (309)
Q Consensus       194 ~~~~~~l~~~~~~dg~i~iwd~~~~  218 (309)
                      .+--+.++ +++.||.|.+|+++..
T Consensus       249 ~~~t~~l~-S~~edg~i~~w~mn~~  272 (404)
T KOG1409|consen  249 AQHTRQLI-SCGEDGGIVVWNMNVK  272 (404)
T ss_pred             hhhheeee-eccCCCeEEEEeccce
Confidence            88777654 8999999999999873

>PRK01742 tolB translocation protein TolB; Provisional

Probab=99.66  E-value=1e-14  Score=120.55  Aligned_cols=159  Identities=18%  Similarity=0.267  Sum_probs=106.6

Q ss_pred             ccccccCCeEEEEEecCCCcEEEEEcCC---CeEEEEEcCCCCcceEEEeeccCCceeEEEeccCCCCeEEEEc-CCCcE
Q 021657           86 IYNGHEDTVEDVTFCPSSAQEFCSVGDD---SCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGS-ADNSV  161 (309)
Q Consensus        86 ~~~~~~~~v~~~~~~~~~~~~l~s~~~d---g~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~-~dg~i  161 (309)
                      .+..|...+.+..|+|+| +.|+..+.+   ..|++||+.+++......+.   .....++|+| +++.|+.+. .+|.+
T Consensus       198 ~lt~~~~~v~~p~wSPDG-~~la~~s~~~~~~~i~i~dl~tg~~~~l~~~~---g~~~~~~wSP-DG~~La~~~~~~g~~  272 (429)
T PRK01742        198 IVNRSSQPLMSPAWSPDG-SKLAYVSFENKKSQLVVHDLRSGARKVVASFR---GHNGAPAFSP-DGSRLAFASSKDGVL  272 (429)
T ss_pred             EeccCCCccccceEcCCC-CEEEEEEecCCCcEEEEEeCCCCceEEEecCC---CccCceeECC-CCCEEEEEEecCCcE
Confidence            445677789999999999 556655432   47999999877632333333   3345789999 898877764 68876


Q ss_pred             EEE--ecCCCCCCCCCCceeeeccCCCCeeEEEEecCCCcEEEEecCCCcEEEEeCCcccccccCCCCCcCCCCceeeee
Q 021657          162 RMF--DRRNLTSNGVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQH  239 (309)
Q Consensus       162 ~i~--d~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~  239 (309)
                      .||  |+.+      + .+..+..+...+...+|+|||+.++.++..++...||+++..+...              ..+
T Consensus       273 ~Iy~~d~~~------~-~~~~lt~~~~~~~~~~wSpDG~~i~f~s~~~g~~~I~~~~~~~~~~--------------~~l  331 (429)
T PRK01742        273 NIYVMGANG------G-TPSQLTSGAGNNTEPSWSPDGQSILFTSDRSGSPQVYRMSASGGGA--------------SLV  331 (429)
T ss_pred             EEEEEECCC------C-CeEeeccCCCCcCCEEECCCCCEEEEEECCCCCceEEEEECCCCCe--------------EEe
Confidence            665  5543      3 3455666666788999999999877676678889999886522211              111


Q ss_pred             cCCCcceeeEEEccCCCeEEEEecCCCCCCCCCCeEEEEEccc
Q 021657          240 AGHRDKVVDFHWNASDPWTVVSVSDDCDSTGGGGTLQIWRMSD  282 (309)
Q Consensus       240 ~~~~~~v~~~~~~~~~~~~~~s~s~d~~s~~~dg~v~vw~~~~  282 (309)
                       .+..  ....|+|++.++++++. +        .+.+||+..
T Consensus       332 -~~~~--~~~~~SpDG~~ia~~~~-~--------~i~~~Dl~~  362 (429)
T PRK01742        332 -GGRG--YSAQISADGKTLVMING-D--------NVVKQDLTS  362 (429)
T ss_pred             -cCCC--CCccCCCCCCEEEEEcC-C--------CEEEEECCC
Confidence             2222  45789999998765433 2        456689873

>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB

Probab=99.65  E-value=6.6e-14  Score=116.19  Aligned_cols=223  Identities=13%  Similarity=0.151  Sum_probs=135.9

Q ss_pred             ccCCCCCcceEEEEECCCCCEEEEecCC---CcEEEEeCCccccccccCCccccccCCCCceeecCCCCCCCCcccCCCC
Q 021657            3 ILTGHQDNAEFALAMCPTEPYVLSGGKD---KSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGP   79 (309)
Q Consensus         3 ~l~~H~~~~V~~~~~~~~~~~l~t~~~d---g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   79 (309)
                      .|..+.. .+.+.+|+|||++|+.++.+   ..|++||+.++..                                    
T Consensus       184 ~l~~~~~-~~~~p~~Spdg~~la~~~~~~~~~~i~v~d~~~g~~------------------------------------  226 (417)
T TIGR02800       184 TITRSRE-PILSPAWSPDGQKLAYVSFESGKPEIYVQDLATGQR------------------------------------  226 (417)
T ss_pred             EeecCCC-ceecccCCCCCCEEEEEEcCCCCcEEEEEECCCCCE------------------------------------
Confidence            3444555 67889999999999876643   4799999875311                                    


Q ss_pred             CcCcccccccccCCeEEEEEecCCCcEEEEEcCCC--eEEEEEcCCCCcceEEEeeccCCceeEEEeccCCCCeEEEEcC
Q 021657           80 SVGPRGIYNGHEDTVEDVTFCPSSAQEFCSVGDDS--CLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSA  157 (309)
Q Consensus        80 ~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg--~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~  157 (309)
                           ..+..+...+.++.|+|++..++++.+.++  .|.+||+.++.   ...+..+........|+| +++.|+..+.
T Consensus       227 -----~~~~~~~~~~~~~~~spDg~~l~~~~~~~~~~~i~~~d~~~~~---~~~l~~~~~~~~~~~~s~-dg~~l~~~s~  297 (417)
T TIGR02800       227 -----EKVASFPGMNGAPAFSPDGSKLAVSLSKDGNPDIYVMDLDGKQ---LTRLTNGPGIDTEPSWSP-DGKSIAFTSD  297 (417)
T ss_pred             -----EEeecCCCCccceEECCCCCEEEEEECCCCCccEEEEECCCCC---EEECCCCCCCCCCEEECC-CCCEEEEEEC
Confidence                 112223445567899999955556666554  58888987765   233334445556789999 8887766544


Q ss_pred             -CC--cEEEEecCCCCCCCCCCceeeeccCCCCeeEEEEecCCCcEEEEecCCC--cEEEEeCCcccccccCCCCCcCCC
Q 021657          158 -DN--SVRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAEDG--LLNIWDYEKVGKKVEQGPRTTNYP  232 (309)
Q Consensus       158 -dg--~i~i~d~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~dg--~i~iwd~~~~~~~~~~~~~~~~~~  232 (309)
                       ++  .|+++|+..      ++ ...+..+......+.|+|++++++.+....+  .|.+||+.. +..           
T Consensus       298 ~~g~~~iy~~d~~~------~~-~~~l~~~~~~~~~~~~spdg~~i~~~~~~~~~~~i~~~d~~~-~~~-----------  358 (417)
T TIGR02800       298 RGGSPQIYMMDADG------GE-VRRLTFRGGYNASPSWSPDGDLIAFVHREGGGFNIAVMDLDG-GGE-----------  358 (417)
T ss_pred             CCCCceEEEEECCC------CC-EEEeecCCCCccCeEECCCCCEEEEEEccCCceEEEEEeCCC-CCe-----------
Confidence             33  577778765      33 3344434556778899999997654443332  677888765 111           


Q ss_pred             CceeeeecCCCcceeeEEEccCCCeEEEEecCCCCCCCCCCeEEEEEccccccCChhhHhHhhhcccceEEEeee
Q 021657          233 AGLFFQHAGHRDKVVDFHWNASDPWTVVSVSDDCDSTGGGGTLQIWRMSDLIYRPQDEVLAELEKFKAHVISCTS  307 (309)
Q Consensus       233 ~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~s~d~~s~~~dg~v~vw~~~~~~~~~~~~~~~~~~~h~~~v~~~~~  307 (309)
                       ..+   .. ........|+|++..++++...+     ....+.+.+..       ++....+..+.+.+...+|
T Consensus       359 -~~l---~~-~~~~~~p~~spdg~~l~~~~~~~-----~~~~l~~~~~~-------g~~~~~~~~~~g~~~~~~w  416 (417)
T TIGR02800       359 -RVL---TD-TGLDESPSFAPNGRMILYATTRG-----GRGVLGLVSTD-------GRFRARLPLGNGDVREPAW  416 (417)
T ss_pred             -EEc---cC-CCCCCCceECCCCCEEEEEEeCC-----CcEEEEEEECC-------CceeeECCCCCCCcCCCCC
Confidence             011   11 11234568999999877766543     12356666654       3333444444455555555

The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.

>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]

Probab=99.65  E-value=4.3e-14  Score=113.00  Aligned_cols=190  Identities=16%  Similarity=0.212  Sum_probs=152.2

Q ss_pred             CCCCCEEEEecCCCcEEEEeCCccccccccCCccccccCCCCc-------------------------eeecCCCCCCCC
Q 021657           18 CPTEPYVLSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGS-------------------------IIKQSPKPGDGN   72 (309)
Q Consensus        18 ~~~~~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~-------------------------~~~~~~~~~~~~   72 (309)
                      .|-..++|....||.+|+|+...+.....+.+...........                         ...+..+...+.
T Consensus         2 ~~~~~~~A~~~~~g~l~iw~t~~~~~~~e~~p~~~~s~t~~~~~w~L~~~~s~~k~~~~~~~~~~s~~t~~lvlgt~~g~   81 (541)
T KOG4547|consen    2 PPALDYFALSTGDGRLRIWDTAKNQLQQEFAPIASLSGTCTYTKWGLSADYSPMKWLSLEKAKKASLDTSMLVLGTPQGS   81 (541)
T ss_pred             CchhheEeecCCCCeEEEEEccCceeeeeeccchhccCcceeEEEEEEeccchHHHHhHHHHhhccCCceEEEeecCCcc
Confidence            3456799999999999999999886666555543332222111                         122333455677


Q ss_pred             cccCCCCCcCcccccc--cccCCeEEEEEecCCCcEEEEEcCCCeEEEEEcCCCCcceEEEeeccCCceeEEEeccCCCC
Q 021657           73 DKAADGPSVGPRGIYN--GHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDN  150 (309)
Q Consensus        73 ~~~~~~~~~~~~~~~~--~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~  150 (309)
                      +.+++...++....+.  .|.+.|+++.++.+- ..|.+++.|+.+..|+....+  ........+..+.+++++| ++.
T Consensus        82 v~~ys~~~g~it~~~st~~h~~~v~~~~~~~~~-~ciyS~~ad~~v~~~~~~~~~--~~~~~~~~~~~~~sl~is~-D~~  157 (541)
T KOG4547|consen   82 VLLYSVAGGEITAKLSTDKHYGNVNEILDAQRL-GCIYSVGADLKVVYILEKEKV--IIRIWKEQKPLVSSLCISP-DGK  157 (541)
T ss_pred             EEEEEecCCeEEEEEecCCCCCcceeeeccccc-CceEecCCceeEEEEecccce--eeeeeccCCCccceEEEcC-CCC
Confidence            7888877777766664  689999999998876 789999999999999998877  7788888889999999999 899


Q ss_pred             eEEEEcCCCcEEEEecCCCCCCCCCCceeeeccCCCCeeEEEEecC-----CCcEEEEecCCCcEEEEeCCccc
Q 021657          151 LILTGSADNSVRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWSPD-----KSSVFGSSAEDGLLNIWDYEKVG  219 (309)
Q Consensus       151 ~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~-----~~~l~~~~~~dg~i~iwd~~~~~  219 (309)
                      .+++++  ++|.+||+.+      ++.+..|.+|.++|++++|--+     |.++|.+...+.-+.+|-+....
T Consensus       158 ~l~~as--~~ik~~~~~~------kevv~~ftgh~s~v~t~~f~~~~~g~~G~~vLssa~~~r~i~~w~v~~~~  223 (541)
T KOG4547|consen  158 ILLTAS--RQIKVLDIET------KEVVITFTGHGSPVRTLSFTTLIDGIIGKYVLSSAAAERGITVWVVEKED  223 (541)
T ss_pred             EEEecc--ceEEEEEccC------ceEEEEecCCCcceEEEEEEEeccccccceeeeccccccceeEEEEEccc
Confidence            999876  6899999999      9999999999999999999887     88888777778889999887733

>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]

Probab=99.64  E-value=6.6e-14  Score=104.50  Aligned_cols=270  Identities=10%  Similarity=0.079  Sum_probs=162.7

Q ss_pred             EEEECCCCCEEEEecCCCcEEEEeCCccccccccCCcccc--ccCCCCceeecCCCCCCCCcccCCCCCcCccccccccc
Q 021657           14 ALAMCPTEPYVLSGGKDKSVVLWSIQDHITSSATDPATAK--SAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHE   91 (309)
Q Consensus        14 ~~~~~~~~~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   91 (309)
                      -++|||+|+++|+++.- .+.|=|.++.....-+......  ..-.......+-....+..+.+|+....+-...+....
T Consensus        13 ~c~fSp~g~yiAs~~~y-rlviRd~~tlq~~qlf~cldki~yieW~ads~~ilC~~yk~~~vqvwsl~Qpew~ckIdeg~   91 (447)
T KOG4497|consen   13 FCSFSPCGNYIASLSRY-RLVIRDSETLQLHQLFLCLDKIVYIEWKADSCHILCVAYKDPKVQVWSLVQPEWYCKIDEGQ   91 (447)
T ss_pred             ceeECCCCCeeeeeeee-EEEEeccchhhHHHHHHHHHHhhheeeeccceeeeeeeeccceEEEEEeecceeEEEeccCC
Confidence            46899999999999876 7778787764222111110000  00001111122223345678888888877777788888


Q ss_pred             CCeEEEEEecCCCcEEEEEcCCCeEEEEEcCCCCcceEEEeeccCCceeEEEeccCCCCeEEEEcCCC------------
Q 021657           92 DTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADN------------  159 (309)
Q Consensus        92 ~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg------------  159 (309)
                      ..+..++|+|+|+.+|.+...|-.|.+|.+.+.+   ...+.-.+..+..++|+| ++++.+..++-.            
T Consensus        92 agls~~~WSPdgrhiL~tseF~lriTVWSL~t~~---~~~~~~pK~~~kg~~f~~-dg~f~ai~sRrDCkdyv~i~~c~~  167 (447)
T KOG4497|consen   92 AGLSSISWSPDGRHILLTSEFDLRITVWSLNTQK---GYLLPHPKTNVKGYAFHP-DGQFCAILSRRDCKDYVQISSCKA  167 (447)
T ss_pred             CcceeeeECCCcceEeeeecceeEEEEEEeccce---eEEecccccCceeEEECC-CCceeeeeecccHHHHHHHHhhHH
Confidence            8999999999998888888899999999998876   223333345668889999 888888776421            


Q ss_pred             ------------------------cEEEEecCCCCCCCCCCceeeeccCCCCeeEEEEecCCCcEEEEecCCCcEEEEeC
Q 021657          160 ------------------------SVRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDY  215 (309)
Q Consensus       160 ------------------------~i~i~d~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~dg~i~iwd~  215 (309)
                                              .+-+||---      .-.+..++ ..-.+..++|+|.+++ ++.|+.|+.+++-+-
T Consensus       168 W~ll~~f~~dT~DltgieWsPdg~~laVwd~~L------eykv~aYe-~~lG~k~v~wsP~~qf-lavGsyD~~lrvlnh  239 (447)
T KOG4497|consen  168 WILLKEFKLDTIDLTGIEWSPDGNWLAVWDNVL------EYKVYAYE-RGLGLKFVEWSPCNQF-LAVGSYDQMLRVLNH  239 (447)
T ss_pred             HHHHHhcCCCcccccCceECCCCcEEEEecchh------hheeeeee-eccceeEEEeccccce-EEeeccchhhhhhce
Confidence                                    122222111      11111111 2346788999999984 789999999887543


Q ss_pred             Cccc---ccccCC----CC-----------------CcC-----------CC----------Cceee------eecCCCc
Q 021657          216 EKVG---KKVEQG----PR-----------------TTN-----------YP----------AGLFF------QHAGHRD  244 (309)
Q Consensus       216 ~~~~---~~~~~~----~~-----------------~~~-----------~~----------~~~~~------~~~~~~~  244 (309)
                      -+.+   +-....    +.                 ...           ..          ...+.      .+.....
T Consensus       240 ~tWk~f~eflhl~s~~dp~~~~~~ke~~~~~ql~~~cLsf~p~~~~a~~~~~se~~YE~~~~pv~~~~lkp~tD~pnPk~  319 (447)
T KOG4497|consen  240 FTWKPFGEFLHLCSYHDPTLHLLEKETFSIVQLLHHCLSFTPTDLEAHIWEESETIYEQQMTPVKVHKLKPPTDFPNPKC  319 (447)
T ss_pred             eeeeehhhhccchhccCchhhhhhhhhcchhhhcccccccCCCccccCccccchhhhhhhhcceeeecccCCCCCCCccc
Confidence            2211   100000    00                 000           00          00111      1112234


Q ss_pred             ceeeEEEccCCCeEEEEecCCCCCCCCCCeEEEEEccccccCChhhHhHhhhcccceEEEeeeCC
Q 021657          245 KVVDFHWNASDPWTVVSVSDDCDSTGGGGTLQIWRMSDLIYRPQDEVLAELEKFKAHVISCTSKP  309 (309)
Q Consensus       245 ~v~~~~~~~~~~~~~~s~s~d~~s~~~dg~v~vw~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~P  309 (309)
                      .+--++|++|.. ++++-.+     ..-+.+-+||++      ..+....+ ....+|....|+|
T Consensus       320 g~g~lafs~Ds~-y~aTrnd-----~~PnalW~Wdlq------~l~l~avL-iQk~piraf~WdP  371 (447)
T KOG4497|consen  320 GAGKLAFSCDST-YAATRND-----KYPNALWLWDLQ------NLKLHAVL-IQKHPIRAFEWDP  371 (447)
T ss_pred             ccceeeecCCce-EEeeecC-----CCCceEEEEech------hhhhhhhh-hhccceeEEEeCC
Confidence            577899999665 4555433     245789999998      44444444 3567899888887

>KOG1963 consensus WD40 repeat protein [General function prediction only]

Probab=99.64  E-value=8.1e-14  Score=116.24  Aligned_cols=169  Identities=18%  Similarity=0.298  Sum_probs=126.7

Q ss_pred             CCCCcceEEEEECCCCCEEEEecCCCcEEEEeCCccccccccCCccccccCCCCceeecCCCCCCCCcccCCCCCcCccc
Q 021657            6 GHQDNAEFALAMCPTEPYVLSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRG   85 (309)
Q Consensus         6 ~H~~~~V~~~~~~~~~~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   85 (309)
                      .|.- .++|.++||+++++|+|..||+|.+|.--..                                    -.......
T Consensus       203 ~Htf-~~t~~~~spn~~~~Aa~d~dGrI~vw~d~~~------------------------------------~~~~~t~t  245 (792)
T KOG1963|consen  203 HHTF-NITCVALSPNERYLAAGDSDGRILVWRDFGS------------------------------------SDDSETCT  245 (792)
T ss_pred             hhcc-cceeEEeccccceEEEeccCCcEEEEecccc------------------------------------ccccccce
Confidence            3666 5899999999999999999999999974320                                    00112234


Q ss_pred             ccccccCCeEEEEEecCCCcEEEEEcCCCeEEEEEcCCCCcceEEEeeccCCceeEEEeccCCCCeEEEEcCCCcEEEEe
Q 021657           86 IYNGHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFD  165 (309)
Q Consensus        86 ~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d  165 (309)
                      .+.-|...|+++.|+++| .+|.+|+..|.+.+|.+.+++   .+.+..-.++|..+.++| ++.+.+....|+.|.+..
T Consensus       246 ~lHWH~~~V~~L~fS~~G-~~LlSGG~E~VLv~Wq~~T~~---kqfLPRLgs~I~~i~vS~-ds~~~sl~~~DNqI~li~  320 (792)
T KOG1963|consen  246 LLHWHHDEVNSLSFSSDG-AYLLSGGREGVLVLWQLETGK---KQFLPRLGSPILHIVVSP-DSDLYSLVLEDNQIHLIK  320 (792)
T ss_pred             EEEecccccceeEEecCC-ceEeecccceEEEEEeecCCC---cccccccCCeeEEEEEcC-CCCeEEEEecCceEEEEe
Confidence            567788999999999999 889999999999999999888   344555678999999999 999999999999999998


Q ss_pred             cCCCCCCCCCCceeeecc--------CCCCeeEEEEecCCCcEEEEecCCCcEEEEeCCcccc
Q 021657          166 RRNLTSNGVGSPINKFEG--------HSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGK  220 (309)
Q Consensus       166 ~~~~~~~~~~~~~~~~~~--------~~~~v~~~~~~~~~~~l~~~~~~dg~i~iwd~~~~~~  220 (309)
                      ..++..   ...+..+..        ..+-.+.++++|.-+ .++-.+..|.|.+||+-+...
T Consensus       321 ~~dl~~---k~tIsgi~~~~~~~k~~~~~l~t~~~idpr~~-~~vln~~~g~vQ~ydl~td~~  379 (792)
T KOG1963|consen  321 ASDLEI---KSTISGIKPPTPSTKTRPQSLTTGVSIDPRTN-SLVLNGHPGHVQFYDLYTDST  379 (792)
T ss_pred             ccchhh---hhhccCccCCCccccccccccceeEEEcCCCC-ceeecCCCceEEEEeccccce
Confidence            765321   111111111        133456788888444 355778899999999876443

>PRK04792 tolB translocation protein TolB; Provisional

Probab=99.64  E-value=7.3e-14  Score=115.77  Aligned_cols=218  Identities=15%  Similarity=0.150  Sum_probs=130.2

Q ss_pred             ceEEEEECCCCCEEEEecC-CC--cEEEEeCCccccccccCCccccccCCCCceeecCCCCCCCCcccCCCCCcCccccc
Q 021657           11 AEFALAMCPTEPYVLSGGK-DK--SVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIY   87 (309)
Q Consensus        11 ~V~~~~~~~~~~~l~t~~~-dg--~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   87 (309)
                      .+.+..|+|||+.|+..+. ++  .|.+||+.++...                                      .+..+
T Consensus       219 ~~~~p~wSPDG~~La~~s~~~g~~~L~~~dl~tg~~~--------------------------------------~lt~~  260 (448)
T PRK04792        219 PLMSPAWSPDGRKLAYVSFENRKAEIFVQDIYTQVRE--------------------------------------KVTSF  260 (448)
T ss_pred             cccCceECCCCCEEEEEEecCCCcEEEEEECCCCCeE--------------------------------------EecCC
Confidence            5678899999998886543 33  5777787643110                                      11111


Q ss_pred             ccccCCeEEEEEecCCCcEEEEEcCCCe--EEEEEcCCCCcceEEEeeccCCceeEEEeccCCCCeEEEEcC-CC--cEE
Q 021657           88 NGHEDTVEDVTFCPSSAQEFCSVGDDSC--LILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSA-DN--SVR  162 (309)
Q Consensus        88 ~~~~~~v~~~~~~~~~~~~l~s~~~dg~--i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~-dg--~i~  162 (309)
                         .+......|+|+|..++++.+.+|.  |.++|+.+++   ...+..+.......+|+| +++.++..+. ++  .|+
T Consensus       261 ---~g~~~~~~wSPDG~~La~~~~~~g~~~Iy~~dl~tg~---~~~lt~~~~~~~~p~wSp-DG~~I~f~s~~~g~~~Iy  333 (448)
T PRK04792        261 ---PGINGAPRFSPDGKKLALVLSKDGQPEIYVVDIATKA---LTRITRHRAIDTEPSWHP-DGKSLIFTSERGGKPQIY  333 (448)
T ss_pred             ---CCCcCCeeECCCCCEEEEEEeCCCCeEEEEEECCCCC---eEECccCCCCccceEECC-CCCEEEEEECCCCCceEE
Confidence               1223467899999656566667775  7777887665   333444555667889999 8887765543 44  466


Q ss_pred             EEecCCCCCCCCCCceeeeccCCCCeeEEEEecCCCcEEEEecCCCcEEE--EeCCcccccccCCCCCcCCCCceeeeec
Q 021657          163 MFDRRNLTSNGVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNI--WDYEKVGKKVEQGPRTTNYPAGLFFQHA  240 (309)
Q Consensus       163 i~d~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~dg~i~i--wd~~~~~~~~~~~~~~~~~~~~~~~~~~  240 (309)
                      ++|+.+      ++. ..+..........+|+|||++++.+...++...|  +|+.. ++.            ..+   .
T Consensus       334 ~~dl~~------g~~-~~Lt~~g~~~~~~~~SpDG~~l~~~~~~~g~~~I~~~dl~~-g~~------------~~l---t  390 (448)
T PRK04792        334 RVNLAS------GKV-SRLTFEGEQNLGGSITPDGRSMIMVNRTNGKFNIARQDLET-GAM------------QVL---T  390 (448)
T ss_pred             EEECCC------CCE-EEEecCCCCCcCeeECCCCCEEEEEEecCCceEEEEEECCC-CCe------------EEc---c
Confidence            667765      432 2222122233457899999987766655665555  55544 111            011   1


Q ss_pred             CCCcceeeEEEccCCCeEEEEecCCCCCCCCCCeEEEEEccccccCChhhHhHhhhcccceEEEeeeCC
Q 021657          241 GHRDKVVDFHWNASDPWTVVSVSDDCDSTGGGGTLQIWRMSDLIYRPQDEVLAELEKFKAHVISCTSKP  309 (309)
Q Consensus       241 ~~~~~v~~~~~~~~~~~~~~s~s~d~~s~~~dg~v~vw~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~P  309 (309)
                      .. .......|+|++..++.+...+     ....+.+++..       +.....+..+.+.+...+|+|
T Consensus       391 ~~-~~d~~ps~spdG~~I~~~~~~~-----g~~~l~~~~~~-------G~~~~~l~~~~g~~~~p~Wsp  446 (448)
T PRK04792        391 ST-RLDESPSVAPNGTMVIYSTTYQ-----GKQVLAAVSID-------GRFKARLPAGQGEVKSPAWSP  446 (448)
T ss_pred             CC-CCCCCceECCCCCEEEEEEecC-----CceEEEEEECC-------CCceEECcCCCCCcCCCccCC
Confidence            11 1122457999999887766543     12346666664       444555665666778888887

>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]

Probab=99.63  E-value=1e-12  Score=97.69  Aligned_cols=238  Identities=12%  Similarity=0.179  Sum_probs=149.9

Q ss_pred             ceEEEEECCCCCEEEEecCCCcEEEEeCCccccccccC--Cccc--cccCCCCceeecCCCC-----CCCCcccCCCCCc
Q 021657           11 AEFALAMCPTEPYVLSGGKDKSVVLWSIQDHITSSATD--PATA--KSAGSSGSIIKQSPKP-----GDGNDKAADGPSV   81 (309)
Q Consensus        11 ~V~~~~~~~~~~~l~t~~~dg~i~vwd~~~~~~~~~~~--~~~~--~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~   81 (309)
                      ...+++|+.|..-++.|..+ -.|||+++.-.......  ....  ...-....+..+..+.     ....+.+||-...
T Consensus         7 ~~lsvs~NQD~ScFava~~~-Gfriyn~~P~ke~~~r~~~~~G~~~veMLfR~N~laLVGGg~~pky~pNkviIWDD~k~   85 (346)
T KOG2111|consen    7 KTLSVSFNQDHSCFAVATDT-GFRIYNCDPFKESASRQFIDGGFKIVEMLFRSNYLALVGGGSRPKYPPNKVIIWDDLKE   85 (346)
T ss_pred             ceeEEEEccCCceEEEEecC-ceEEEecCchhhhhhhccccCchhhhhHhhhhceEEEecCCCCCCCCCceEEEEecccC
Confidence            45679999999888887765 57899987532111110  0000  0000111111111121     2356788887777


Q ss_pred             CcccccccccCCeEEEEEecCCCcEEEEEcCCCeEEEEEcCCCCcceEEEeeccCCceeEEEeccCCC-CeEEE-EcCCC
Q 021657           82 GPRGIYNGHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDD-NLILT-GSADN  159 (309)
Q Consensus        82 ~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~~l~~-~~~dg  159 (309)
                      +++..+. ...+|.++.+.++.   +++. ..+.|.||.....-+ ....+.....+---++..|... .+||. |-.-|
T Consensus        86 ~~i~el~-f~~~I~~V~l~r~r---iVvv-l~~~I~VytF~~n~k-~l~~~et~~NPkGlC~~~~~~~k~~LafPg~k~G  159 (346)
T KOG2111|consen   86 RCIIELS-FNSEIKAVKLRRDR---IVVV-LENKIYVYTFPDNPK-LLHVIETRSNPKGLCSLCPTSNKSLLAFPGFKTG  159 (346)
T ss_pred             cEEEEEE-eccceeeEEEcCCe---EEEE-ecCeEEEEEcCCChh-heeeeecccCCCceEeecCCCCceEEEcCCCccc
Confidence            7766654 56789999998753   4444 457899999874332 3333322221211333444223 34443 34569


Q ss_pred             cEEEEecCCCCCCCCCCceeeeccCCCCeeEEEEecCCCcEEEEecCCCc-EEEEeCCcccccccCCCCCcCCCCceeee
Q 021657          160 SVRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAEDGL-LNIWDYEKVGKKVEQGPRTTNYPAGLFFQ  238 (309)
Q Consensus       160 ~i~i~d~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~dg~-i~iwd~~~~~~~~~~~~~~~~~~~~~~~~  238 (309)
                      .|.|-|+....    ......+.+|.+.|.+++++.+|. ++|+++..|+ |||||..+ +.              ++.+
T Consensus       160 qvQi~dL~~~~----~~~p~~I~AH~s~Iacv~Ln~~Gt-~vATaStkGTLIRIFdt~~-g~--------------~l~E  219 (346)
T KOG2111|consen  160 QVQIVDLASTK----PNAPSIINAHDSDIACVALNLQGT-LVATASTKGTLIRIFDTED-GT--------------LLQE  219 (346)
T ss_pred             eEEEEEhhhcC----cCCceEEEcccCceeEEEEcCCcc-EEEEeccCcEEEEEEEcCC-Cc--------------Eeee
Confidence            99999998732    113467889999999999999999 6899999998 89999998 32              3333


Q ss_pred             ec--CCCcceeeEEEccCCCeEEEEecCCCCCCCCCCeEEEEEcccc
Q 021657          239 HA--GHRDKVVDFHWNASDPWTVVSVSDDCDSTGGGGTLQIWRMSDL  283 (309)
Q Consensus       239 ~~--~~~~~v~~~~~~~~~~~~~~s~s~d~~s~~~dg~v~vw~~~~~  283 (309)
                      +.  .....|++++|+|+..+ ++.+|+.       |+|+||.+.+.
T Consensus       220 ~RRG~d~A~iy~iaFSp~~s~-LavsSdK-------gTlHiF~l~~~  258 (346)
T KOG2111|consen  220 LRRGVDRADIYCIAFSPNSSW-LAVSSDK-------GTLHIFSLRDT  258 (346)
T ss_pred             eecCCchheEEEEEeCCCccE-EEEEcCC-------CeEEEEEeecC
Confidence            32  24457999999998775 5555655       99999999863

>PRK01029 tolB translocation protein TolB; Provisional

Probab=99.60  E-value=7.1e-13  Score=109.09  Aligned_cols=185  Identities=12%  Similarity=0.110  Sum_probs=106.6

Q ss_pred             CeEEEEEecCCCcEEEEEcCCC----eEEEEEcCCCC-cceEEEeeccCCceeEEEeccCCCCeEEEEc-CCCcEEEEec
Q 021657           93 TVEDVTFCPSSAQEFCSVGDDS----CLILWDARVGT-SPVIKVEKAHDADLHCVDWNPLDDNLILTGS-ADNSVRMFDR  166 (309)
Q Consensus        93 ~v~~~~~~~~~~~~l~s~~~dg----~i~iwd~~~~~-~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~-~dg~i~i~d~  166 (309)
                      ......|+|||..++++...+|    .+.+|++..+. .................+|+| +++.|+..+ .+|...+|.+
T Consensus       232 ~~~~p~wSPDG~~Laf~s~~~g~~di~~~~~~~~~g~~g~~~~lt~~~~~~~~~p~wSP-DG~~Laf~s~~~g~~~ly~~  310 (428)
T PRK01029        232 NQLMPTFSPRKKLLAFISDRYGNPDLFIQSFSLETGAIGKPRRLLNEAFGTQGNPSFSP-DGTRLVFVSNKDGRPRIYIM  310 (428)
T ss_pred             CccceEECCCCCEEEEEECCCCCcceeEEEeecccCCCCcceEeecCCCCCcCCeEECC-CCCEEEEEECCCCCceEEEE
Confidence            3446799999955555544333    34457766532 112222222233456789999 888766554 4675555543


Q ss_pred             CCCCCCCCCCceeeeccCCCCeeEEEEecCCCcEEEEecCC--CcEEEEeCCcccccccCCCCCcCCCCceeeeecCCCc
Q 021657          167 RNLTSNGVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAED--GLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRD  244 (309)
Q Consensus       167 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~d--g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  244 (309)
                      .....   +.....+......+....|+|||++++.+...+  ..|.+||+... +.               ..+.....
T Consensus       311 ~~~~~---g~~~~~lt~~~~~~~~p~wSPDG~~Laf~~~~~g~~~I~v~dl~~g-~~---------------~~Lt~~~~  371 (428)
T PRK01029        311 QIDPE---GQSPRLLTKKYRNSSCPAWSPDGKKIAFCSVIKGVRQICVYDLATG-RD---------------YQLTTSPE  371 (428)
T ss_pred             ECccc---ccceEEeccCCCCccceeECCCCCEEEEEEcCCCCcEEEEEECCCC-Ce---------------EEccCCCC
Confidence            32100   223344444445667889999999866555443  36888998762 11               11122223


Q ss_pred             ceeeEEEccCCCeEEEEecCCCCCCCCCCeEEEEEccccccCChhhHhHhhhcccceEEEeeeCC
Q 021657          245 KVVDFHWNASDPWTVVSVSDDCDSTGGGGTLQIWRMSDLIYRPQDEVLAELEKFKAHVISCTSKP  309 (309)
Q Consensus       245 ~v~~~~~~~~~~~~~~s~s~d~~s~~~dg~v~vw~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~P  309 (309)
                      .+....|+|++..++.+...+     .+..|.+||+..      ++. ..+....+.+...+|+|
T Consensus       372 ~~~~p~wSpDG~~L~f~~~~~-----g~~~L~~vdl~~------g~~-~~Lt~~~g~~~~p~Ws~  424 (428)
T PRK01029        372 NKESPSWAIDSLHLVYSAGNS-----NESELYLISLIT------KKT-RKIVIGSGEKRFPSWGA  424 (428)
T ss_pred             CccceEECCCCCEEEEEECCC-----CCceEEEEECCC------CCE-EEeecCCCcccCceecC
Confidence            456789999999887765432     346788889872      322 22333445566677766

>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=99.60  E-value=4.2e-15  Score=115.43  Aligned_cols=188  Identities=11%  Similarity=0.145  Sum_probs=136.2

Q ss_pred             ccCCCCCcceEEEEECCCCCEEEEecCCCcEEEEeCCccccccccCCccccccCCCCceeecCCCCCCCCcccCCCCCcC
Q 021657            3 ILTGHQDNAEFALAMCPTEPYVLSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVG   82 (309)
Q Consensus         3 ~l~~H~~~~V~~~~~~~~~~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   82 (309)
                      .|+.|..  |..+.|-|.--+|++++..|.++.-|+.                                        .++
T Consensus       205 Clk~~~~--v~rLeFLPyHfLL~~~~~~G~L~Y~DVS----------------------------------------~Gk  242 (545)
T KOG1272|consen  205 CLKRHIR--VARLEFLPYHFLLVAASEAGFLKYQDVS----------------------------------------TGK  242 (545)
T ss_pred             ehhhcCc--hhhhcccchhheeeecccCCceEEEeec----------------------------------------hhh
Confidence            4444443  5666676666666677777777666665                                        566


Q ss_pred             cccccccccCCeEEEEEecCCCcEEEEEcCCCeEEEEEcCCCCcceEEEeeccCCceeEEEeccCCCCeEEEEcCCCcEE
Q 021657           83 PRGIYNGHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVR  162 (309)
Q Consensus        83 ~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~  162 (309)
                      .+..+....+.+..|+-+|-+ ..+-+|...|+|.+|.....+  ....+..|.++|.++++.+ +|+++++.+.|..++
T Consensus       243 lVa~~~t~~G~~~vm~qNP~N-aVih~GhsnGtVSlWSP~ske--PLvKiLcH~g~V~siAv~~-~G~YMaTtG~Dr~~k  318 (545)
T KOG1272|consen  243 LVASIRTGAGRTDVMKQNPYN-AVIHLGHSNGTVSLWSPNSKE--PLVKILCHRGPVSSIAVDR-GGRYMATTGLDRKVK  318 (545)
T ss_pred             hhHHHHccCCccchhhcCCcc-ceEEEcCCCceEEecCCCCcc--hHHHHHhcCCCcceEEECC-CCcEEeeccccccee
Confidence            677777778889999999987 789999999999999987766  4555668999999999999 999999999999999


Q ss_pred             EEecCCCCCCCCCCceeeeccCCCCeeEEEEecCCCcEEEEecCCCcEEEEeCCcccccccCCCCCcCCCCceeeeecCC
Q 021657          163 MFDRRNLTSNGVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGH  242 (309)
Q Consensus       163 i~d~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~  242 (309)
                      |||+|+      ...+.++.. ..+...+++|..|  +||. +....+.||.=...+....         ..+..... -
T Consensus       319 IWDlR~------~~ql~t~~t-p~~a~~ls~Sqkg--lLA~-~~G~~v~iw~d~~~~s~~~---------~~pYm~H~-~  378 (545)
T KOG1272|consen  319 IWDLRN------FYQLHTYRT-PHPASNLSLSQKG--LLAL-SYGDHVQIWKDALKGSGHG---------ETPYMNHR-C  378 (545)
T ss_pred             Eeeecc------ccccceeec-CCCcccccccccc--ceee-ecCCeeeeehhhhcCCCCC---------Ccchhhhc-c
Confidence            999999      666666664 5667889999888  4644 4456799996433221111         11111111 1


Q ss_pred             CcceeeEEEccCCC
Q 021657          243 RDKVVDFHWNASDP  256 (309)
Q Consensus       243 ~~~v~~~~~~~~~~  256 (309)
                      ..+|..+.|.|-.+
T Consensus       379 ~~~V~~l~FcP~ED  392 (545)
T KOG1272|consen  379 GGPVEDLRFCPYED  392 (545)
T ss_pred             CcccccceeccHHH
Confidence            23788888888654

>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]

Probab=99.60  E-value=3.8e-12  Score=94.71  Aligned_cols=102  Identities=24%  Similarity=0.448  Sum_probs=87.5

Q ss_pred             EcCCCeEEEEEcCCCCcceEEEeeccCCceeEEEeccCCCCeEEEEcCCCc-EEEEecCCCCCCCCCCceeeeccC--CC
Q 021657          110 VGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNS-VRMFDRRNLTSNGVGSPINKFEGH--SA  186 (309)
Q Consensus       110 ~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~-i~i~d~~~~~~~~~~~~~~~~~~~--~~  186 (309)
                      |-.-|.|.|-|+...+........+|...|.|++.+. +|..+|+++..|+ |||||..+      +.++.++...  ..
T Consensus       155 g~k~GqvQi~dL~~~~~~~p~~I~AH~s~Iacv~Ln~-~Gt~vATaStkGTLIRIFdt~~------g~~l~E~RRG~d~A  227 (346)
T KOG2111|consen  155 GFKTGQVQIVDLASTKPNAPSIINAHDSDIACVALNL-QGTLVATASTKGTLIRIFDTED------GTLLQELRRGVDRA  227 (346)
T ss_pred             CCccceEEEEEhhhcCcCCceEEEcccCceeEEEEcC-CccEEEEeccCcEEEEEEEcCC------CcEeeeeecCCchh
Confidence            4456999999998776433577789999999999999 9999999999996 78999999      8999988643  45


Q ss_pred             CeeEEEEecCCCcEEEEecCCCcEEEEeCCccc
Q 021657          187 AVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVG  219 (309)
Q Consensus       187 ~v~~~~~~~~~~~l~~~~~~dg~i~iwd~~~~~  219 (309)
                      .|.+|+|+|+..+ +|++++.|+++||.++...
T Consensus       228 ~iy~iaFSp~~s~-LavsSdKgTlHiF~l~~~~  259 (346)
T KOG2111|consen  228 DIYCIAFSPNSSW-LAVSSDKGTLHIFSLRDTE  259 (346)
T ss_pred             eEEEEEeCCCccE-EEEEcCCCeEEEEEeecCC
Confidence            6999999999996 6799999999999998743

>KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism]

Probab=99.60  E-value=1e-13  Score=101.84  Aligned_cols=176  Identities=19%  Similarity=0.248  Sum_probs=130.1

Q ss_pred             cccccccccCCeEEEEEecCCCcEEEEEcCCCeEEEEEcCCCCcceEEEeeccCCceeEEEeccCCCCeEEEEcCCCcEE
Q 021657           83 PRGIYNGHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVR  162 (309)
Q Consensus        83 ~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~  162 (309)
                      .++.++.|.-+++...|+...++++.+|++|+.+.-||++..+.-.....+-|...|.++.-+|..+.++++|+.|-.|+
T Consensus       157 ~vq~wk~He~E~Wta~f~~~~pnlvytGgDD~~l~~~D~R~p~~~i~~n~kvH~~GV~SI~ss~~~~~~I~TGsYDe~i~  236 (339)
T KOG0280|consen  157 KVQTWKVHEFEAWTAKFSDKEPNLVYTGGDDGSLSCWDIRIPKTFIWHNSKVHTSGVVSIYSSPPKPTYIATGSYDECIR  236 (339)
T ss_pred             ecccccccceeeeeeecccCCCceEEecCCCceEEEEEecCCcceeeecceeeecceEEEecCCCCCceEEEecccccee
Confidence            35578889999999999988889999999999999999995543233445678899999999886788999999999999


Q ss_pred             EEecCCCCCCCCCCceeeeccCCCCeeEEEEecCCCcEEEEecCCCcEEEEeCCcccccccCCCCCcCCCCceeeeecCC
Q 021657          163 MFDRRNLTSNGVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGH  242 (309)
Q Consensus       163 i~d~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~  242 (309)
                      +||.|++     ++++..-. ..+.|..+.++|.-...+..++.-+-.+|-++.......          ...+.....|
T Consensus       237 ~~DtRnm-----~kPl~~~~-v~GGVWRi~~~p~~~~~lL~~CMh~G~ki~~~~~~~~e~----------~~~~~s~~~h  300 (339)
T KOG0280|consen  237 VLDTRNM-----GKPLFKAK-VGGGVWRIKHHPEIFHRLLAACMHNGAKILDSSDKVLEF----------QIVLPSDKIH  300 (339)
T ss_pred             eeehhcc-----cCccccCc-cccceEEEEecchhhhHHHHHHHhcCceEEEecccccch----------heeeeccccc
Confidence            9999976     67766554 347899999999655433455555567888877632221          1234556778


Q ss_pred             CcceeeEEEccCCCeEEEEecCCCCCCCCCCeEE-EEEcc
Q 021657          243 RDKVVDFHWNASDPWTVVSVSDDCDSTGGGGTLQ-IWRMS  281 (309)
Q Consensus       243 ~~~v~~~~~~~~~~~~~~s~s~d~~s~~~dg~v~-vw~~~  281 (309)
                      .+-++.-.|... ..++++||.      .|+.++ +|-.-
T Consensus       301 dSl~YG~DWd~~-~~~lATCsF------YDk~~~~~Wl~~  333 (339)
T KOG0280|consen  301 DSLCYGGDWDSK-DSFLATCSF------YDKKIRQLWLHI  333 (339)
T ss_pred             cceeeccccccc-cceeeeeec------cccceeeeeeec
Confidence            888888888654 346776552      356755 77544

>KOG3881 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.59  E-value=1e-13  Score=105.60  Aligned_cols=166  Identities=19%  Similarity=0.347  Sum_probs=124.9

Q ss_pred             eEEEEECCCCC-EEEEecCC--CcEEEEeCCccccccccCCccccccCCCCceeecCCCCCCCCcccCCCCCcCcccccc
Q 021657           12 EFALAMCPTEP-YVLSGGKD--KSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYN   88 (309)
Q Consensus        12 V~~~~~~~~~~-~l~t~~~d--g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   88 (309)
                      +..+.-++..+ .+++|+..  ..++|||++..........                               ...-..--
T Consensus       151 ~~~~r~~~~~p~Iva~GGke~~n~lkiwdle~~~qiw~aKN-------------------------------vpnD~L~L  199 (412)
T KOG3881|consen  151 LYDVRQTDTDPYIVATGGKENINELKIWDLEQSKQIWSAKN-------------------------------VPNDRLGL  199 (412)
T ss_pred             eeeeccCCCCCceEecCchhcccceeeeecccceeeeeccC-------------------------------CCCccccc
Confidence            45566666444 45678888  8899999986522221111                               00000000


Q ss_pred             cccCCeEEEEEecC-CCcEEEEEcCCCeEEEEEcCCCCcceEEEeeccCCceeEEEeccCCCCeEEEEcCCCcEEEEecC
Q 021657           89 GHEDTVEDVTFCPS-SAQEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRR  167 (309)
Q Consensus        89 ~~~~~v~~~~~~~~-~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~  167 (309)
                      .-.-.++++.|-+. ....|++++.-+.+++||.+.++.| +..+.-...+++++...| .++++++|..-|.+..||++
T Consensus       200 rVPvW~tdi~Fl~g~~~~~fat~T~~hqvR~YDt~~qRRP-V~~fd~~E~~is~~~l~p-~gn~Iy~gn~~g~l~~FD~r  277 (412)
T KOG3881|consen  200 RVPVWITDIRFLEGSPNYKFATITRYHQVRLYDTRHQRRP-VAQFDFLENPISSTGLTP-SGNFIYTGNTKGQLAKFDLR  277 (412)
T ss_pred             eeeeeeccceecCCCCCceEEEEecceeEEEecCcccCcc-eeEeccccCcceeeeecC-CCcEEEEecccchhheeccc
Confidence            01224677888775 1378999999999999999988764 455556678999999999 99999999999999999999


Q ss_pred             CCCCCCCCCceee-eccCCCCeeEEEEecCCCcEEEEecCCCcEEEEeCCc
Q 021657          168 NLTSNGVGSPINK-FEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEK  217 (309)
Q Consensus       168 ~~~~~~~~~~~~~-~~~~~~~v~~~~~~~~~~~l~~~~~~dg~i~iwd~~~  217 (309)
                      .      ++.+.. +++..+.|++|..+|.++ ++|+++-|..++|+|+.+
T Consensus       278 ~------~kl~g~~~kg~tGsirsih~hp~~~-~las~GLDRyvRIhD~kt  321 (412)
T KOG3881|consen  278 G------GKLLGCGLKGITGSIRSIHCHPTHP-VLASCGLDRYVRIHDIKT  321 (412)
T ss_pred             C------ceeeccccCCccCCcceEEEcCCCc-eEEeeccceeEEEeeccc
Confidence            9      666655 888899999999999999 578999999999999998

>PRK02889 tolB translocation protein TolB; Provisional

Probab=99.58  E-value=7.8e-13  Score=109.34  Aligned_cols=169  Identities=14%  Similarity=0.174  Sum_probs=107.6

Q ss_pred             cccccccCCeEEEEEecCCCcEEEEEcC-C--CeEEEEEcCCCCcceEEEeeccCCceeEEEeccCCCCeEE-EEcCCCc
Q 021657           85 GIYNGHEDTVEDVTFCPSSAQEFCSVGD-D--SCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLIL-TGSADNS  160 (309)
Q Consensus        85 ~~~~~~~~~v~~~~~~~~~~~~l~s~~~-d--g~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~-~~~~dg~  160 (309)
                      ..+..+...+.+.+|+|+| +.|+..+. +  ..|.+||+.+++.   ..+......+.+.+|+| +++.|+ +.+.+|.
T Consensus       189 ~~l~~~~~~v~~p~wSPDG-~~la~~s~~~~~~~I~~~dl~~g~~---~~l~~~~g~~~~~~~SP-DG~~la~~~~~~g~  263 (427)
T PRK02889        189 QSALSSPEPIISPAWSPDG-TKLAYVSFESKKPVVYVHDLATGRR---RVVANFKGSNSAPAWSP-DGRTLAVALSRDGN  263 (427)
T ss_pred             eEeccCCCCcccceEcCCC-CEEEEEEccCCCcEEEEEECCCCCE---EEeecCCCCccceEECC-CCCEEEEEEccCCC
Confidence            3344567789999999999 55555443 2  4699999988772   22333345567899999 887776 5677887


Q ss_pred             EEEEecCCCCCCCCCCceeeeccCCCCeeEEEEecCCCcEEEEecCCCcEEEEeCCcccccccCCCCCcCCCCceeeeec
Q 021657          161 VRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHA  240 (309)
Q Consensus       161 i~i~d~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~  240 (309)
                      ..+|.+...     +.....+..+........|+|||++++.+...+|...||.+...+...           ..+ .+.
T Consensus       264 ~~Iy~~d~~-----~~~~~~lt~~~~~~~~~~wSpDG~~l~f~s~~~g~~~Iy~~~~~~g~~-----------~~l-t~~  326 (427)
T PRK02889        264 SQIYTVNAD-----GSGLRRLTQSSGIDTEPFFSPDGRSIYFTSDRGGAPQIYRMPASGGAA-----------QRV-TFT  326 (427)
T ss_pred             ceEEEEECC-----CCCcEECCCCCCCCcCeEEcCCCCEEEEEecCCCCcEEEEEECCCCce-----------EEE-ecC
Confidence            777665431     233455554555566789999999876565556777777765322110           111 111


Q ss_pred             CCCcceeeEEEccCCCeEEEEecCCCCCCCCCCeEEEEEccc
Q 021657          241 GHRDKVVDFHWNASDPWTVVSVSDDCDSTGGGGTLQIWRMSD  282 (309)
Q Consensus       241 ~~~~~v~~~~~~~~~~~~~~s~s~d~~s~~~dg~v~vw~~~~  282 (309)
                        ........|+|++.+++.+...+     .+..|.+||+..
T Consensus       327 --g~~~~~~~~SpDG~~Ia~~s~~~-----g~~~I~v~d~~~  361 (427)
T PRK02889        327 --GSYNTSPRISPDGKLLAYISRVG-----GAFKLYVQDLAT  361 (427)
T ss_pred             --CCCcCceEECCCCCEEEEEEccC-----CcEEEEEEECCC
Confidence              22344678999999877544321     124799999873

>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]

Probab=99.56  E-value=1.7e-13  Score=118.42  Aligned_cols=202  Identities=13%  Similarity=0.135  Sum_probs=133.7

Q ss_pred             CcCcccccccccCCeEEEEEecCCCcEEEEEcCCCeEEEEEcCCCCcc-----eEEEeeccCCceeEEEeccCCCCeEEE
Q 021657           80 SVGPRGIYNGHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSP-----VIKVEKAHDADLHCVDWNPLDDNLILT  154 (309)
Q Consensus        80 ~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~-----~~~~~~~~~~~v~~~~~~~~~~~~l~~  154 (309)
                      .+..+..+..|...+..++.++....+|++|+.||+|++||.+.-...     ...+.......+.++.+.+ +++.+|+
T Consensus      1037 ~G~lVAhL~Ehs~~v~k~a~s~~~~s~FvsgS~DGtVKvW~~~k~~~~~~s~rS~ltys~~~sr~~~vt~~~-~~~~~Av 1115 (1431)
T KOG1240|consen 1037 RGILVAHLHEHSSAVIKLAVSSEHTSLFVSGSDDGTVKVWNLRKLEGEGGSARSELTYSPEGSRVEKVTMCG-NGDQFAV 1115 (1431)
T ss_pred             cceEeehhhhccccccceeecCCCCceEEEecCCceEEEeeehhhhcCcceeeeeEEEeccCCceEEEEecc-CCCeEEE
Confidence            345567788899999999998876689999999999999998753321     2233334567899999999 9999999


Q ss_pred             EcCCCcEEEEecCCCCCCCC-CCceeeeccC-CCCee-EEEEecC-CCcEEEEecCCCcEEEEeCCcccccccCCCCCcC
Q 021657          155 GSADNSVRMFDRRNLTSNGV-GSPINKFEGH-SAAVL-CVQWSPD-KSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTN  230 (309)
Q Consensus       155 ~~~dg~i~i~d~~~~~~~~~-~~~~~~~~~~-~~~v~-~~~~~~~-~~~l~~~~~~dg~i~iwd~~~~~~~~~~~~~~~~  230 (309)
                      ++.||.|++.++........ ....+....+ .+.+. .-++... +..+++.+...+.|..||++.....         
T Consensus      1116 ~t~DG~v~~~~id~~~~~~~~~~~~ri~n~~~~g~vv~m~a~~~~~~S~~lvy~T~~~~iv~~D~r~~~~~--------- 1186 (1431)
T KOG1240|consen 1116 STKDGSVRVLRIDHYNVSKRVATQVRIPNLKKDGVVVSMHAFTAIVQSHVLVYATDLSRIVSWDTRMRHDA--------- 1186 (1431)
T ss_pred             EcCCCeEEEEEccccccccceeeeeecccccCCCceEEeecccccccceeEEEEEeccceEEecchhhhhH---------
Confidence            99999999999876211000 1111111111 22333 3334332 2336778888999999999983221         


Q ss_pred             CCCceeeeecCCCcceeeEEEccCCCeEEEEecCCCCCCCCCCeEEEEEccccccCChhhHhHhhh-cccceEEEeeeCC
Q 021657          231 YPAGLFFQHAGHRDKVVDFHWNASDPWTVVSVSDDCDSTGGGGTLQIWRMSDLIYRPQDEVLAELE-KFKAHVISCTSKP  309 (309)
Q Consensus       231 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~s~d~~s~~~dg~v~vw~~~~~~~~~~~~~~~~~~-~h~~~v~~~~~~P  309 (309)
                          .........+.|++++.+|.+.+++        .|..-|.+.+||++-      ..++.... ++..+|..+..+|
T Consensus      1187 ----w~lk~~~~hG~vTSi~idp~~~Wlv--------iGts~G~l~lWDLRF------~~~i~sw~~P~~~~i~~v~~~~ 1248 (1431)
T KOG1240|consen 1187 ----WRLKNQLRHGLVTSIVIDPWCNWLV--------IGTSRGQLVLWDLRF------RVPILSWEHPARAPIRHVWLCP 1248 (1431)
T ss_pred             ----HhhhcCccccceeEEEecCCceEEE--------EecCCceEEEEEeec------CceeecccCcccCCcceEEeec
Confidence                1112233457899999999888776        566669999999993      33443332 2335555555443

>KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism]

Probab=99.56  E-value=5.2e-13  Score=98.17  Aligned_cols=160  Identities=16%  Similarity=0.152  Sum_probs=120.7

Q ss_pred             eEEEEEecCCCcEEEEEcCCCeEEEEEcCCCCcceEEEeeccCCceeEEEeccCCCCeEEEEcCCCcEEEEecCCCCCCC
Q 021657           94 VEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNG  173 (309)
Q Consensus        94 v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~  173 (309)
                      ..++.|++.+ ..++++..+|.+.+-+.........+..+.|..++....|+..+.+++.+|+.|+.+..||+|.+    
T Consensus       124 ~lslD~~~~~-~~i~vs~s~G~~~~v~~t~~~le~vq~wk~He~E~Wta~f~~~~pnlvytGgDD~~l~~~D~R~p----  198 (339)
T KOG0280|consen  124 ALSLDISTSG-TKIFVSDSRGSISGVYETEMVLEKVQTWKVHEFEAWTAKFSDKEPNLVYTGGDDGSLSCWDIRIP----  198 (339)
T ss_pred             eeEEEeeccC-ceEEEEcCCCcEEEEecceeeeeecccccccceeeeeeecccCCCceEEecCCCceEEEEEecCC----
Confidence            4577888887 66888889999986665445433445788999999999999878899999999999999999964    


Q ss_pred             CCCceee-eccCCCCeeEEEEecCCCcEEEEecCCCcEEEEeCCcccccccCCCCCcCCCCceeeeecCCCcceeeEEEc
Q 021657          174 VGSPINK-FEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKVVDFHWN  252 (309)
Q Consensus       174 ~~~~~~~-~~~~~~~v~~~~~~~~~~~l~~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~  252 (309)
                       .+.+.. .+.|...|.+|.-+|..++.+++|+.|-.|++||.|+.++++..               ..-.+.|+.+.++
T Consensus       199 -~~~i~~n~kvH~~GV~SI~ss~~~~~~I~TGsYDe~i~~~DtRnm~kPl~~---------------~~v~GGVWRi~~~  262 (339)
T KOG0280|consen  199 -KTFIWHNSKVHTSGVVSIYSSPPKPTYIATGSYDECIRVLDTRNMGKPLFK---------------AKVGGGVWRIKHH  262 (339)
T ss_pred             -cceeeecceeeecceEEEecCCCCCceEEEeccccceeeeehhcccCcccc---------------CccccceEEEEec
Confidence             444443 56788899999999887777899999999999999987776432               1123679999999


Q ss_pred             cCCCe-EEEEecCCCCCCCCCCeEEEEEccc
Q 021657          253 ASDPW-TVVSVSDDCDSTGGGGTLQIWRMSD  282 (309)
Q Consensus       253 ~~~~~-~~~s~s~d~~s~~~dg~v~vw~~~~  282 (309)
                      |.... ++++|        .-+-.+|-+.++
T Consensus       263 p~~~~~lL~~C--------Mh~G~ki~~~~~  285 (339)
T KOG0280|consen  263 PEIFHRLLAAC--------MHNGAKILDSSD  285 (339)
T ss_pred             chhhhHHHHHH--------HhcCceEEEecc
Confidence            86542 33222        224566666664

>PRK05137 tolB translocation protein TolB; Provisional

Probab=99.55  E-value=3.1e-12  Score=106.33  Aligned_cols=164  Identities=15%  Similarity=0.201  Sum_probs=108.7

Q ss_pred             cccccccCCeEEEEEecCCCcEEEEEc---CCCeEEEEEcCCCCcceEEEeeccCCceeEEEeccCCCCeEE-EEcCCCc
Q 021657           85 GIYNGHEDTVEDVTFCPSSAQEFCSVG---DDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLIL-TGSADNS  160 (309)
Q Consensus        85 ~~~~~~~~~v~~~~~~~~~~~~l~s~~---~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~-~~~~dg~  160 (309)
                      ..+..|...+.+..|+|+| +.|+..+   .+..|.+||+.+++.   ..+..+...+...+|+| +++.|+ +.+.++.
T Consensus       195 ~~lt~~~~~v~~p~wSpDG-~~lay~s~~~g~~~i~~~dl~~g~~---~~l~~~~g~~~~~~~SP-DG~~la~~~~~~g~  269 (435)
T PRK05137        195 RYLTDGSSLVLTPRFSPNR-QEITYMSYANGRPRVYLLDLETGQR---ELVGNFPGMTFAPRFSP-DGRKVVMSLSQGGN  269 (435)
T ss_pred             EEEecCCCCeEeeEECCCC-CEEEEEEecCCCCEEEEEECCCCcE---EEeecCCCcccCcEECC-CCCEEEEEEecCCC
Confidence            3455677889999999999 4555443   346899999988772   33445566778899999 887665 5555655


Q ss_pred             --EEEEecCCCCCCCCCCceeeeccCCCCeeEEEEecCCCcEEEEecCCC--cEEEEeCCcccccccCCCCCcCCCCcee
Q 021657          161 --VRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAEDG--LLNIWDYEKVGKKVEQGPRTTNYPAGLF  236 (309)
Q Consensus       161 --i~i~d~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~dg--~i~iwd~~~~~~~~~~~~~~~~~~~~~~  236 (309)
                        |++||+.+      +. +..+..+.......+|+|||++++.+...+|  .|+++|+.. ++               .
T Consensus       270 ~~Iy~~d~~~------~~-~~~Lt~~~~~~~~~~~spDG~~i~f~s~~~g~~~Iy~~d~~g-~~---------------~  326 (435)
T PRK05137        270 TDIYTMDLRS------GT-TTRLTDSPAIDTSPSYSPDGSQIVFESDRSGSPQLYVMNADG-SN---------------P  326 (435)
T ss_pred             ceEEEEECCC------Cc-eEEccCCCCccCceeEcCCCCEEEEEECCCCCCeEEEEECCC-CC---------------e
Confidence              77778876      43 3455555556678899999998665554444  566777654 11               1


Q ss_pred             eeecCCCcceeeEEEccCCCeEEEEecCCCCCCCCCCeEEEEEcc
Q 021657          237 FQHAGHRDKVVDFHWNASDPWTVVSVSDDCDSTGGGGTLQIWRMS  281 (309)
Q Consensus       237 ~~~~~~~~~v~~~~~~~~~~~~~~s~s~d~~s~~~dg~v~vw~~~  281 (309)
                      ..+..+...+....|+|++.+++.+....     .+..|.+||+.
T Consensus       327 ~~lt~~~~~~~~~~~SpdG~~ia~~~~~~-----~~~~i~~~d~~  366 (435)
T PRK05137        327 RRISFGGGRYSTPVWSPRGDLIAFTKQGG-----GQFSIGVMKPD  366 (435)
T ss_pred             EEeecCCCcccCeEECCCCCEEEEEEcCC-----CceEEEEEECC
Confidence            11222234566788999999877654321     23478888875

>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]

Probab=99.55  E-value=2.2e-13  Score=101.80  Aligned_cols=232  Identities=16%  Similarity=0.269  Sum_probs=138.7

Q ss_pred             ceEEEEECCCCCE-EEEecCCCcEEEEeCCccccccccCCcccc---ccCCCCceeecCC-CCCCCCcccCCCCCcCccc
Q 021657           11 AEFALAMCPTEPY-VLSGGKDKSVVLWSIQDHITSSATDPATAK---SAGSSGSIIKQSP-KPGDGNDKAADGPSVGPRG   85 (309)
Q Consensus        11 ~V~~~~~~~~~~~-l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~   85 (309)
                      .+.+++|||||+. |.+...|-+|.||.+.+.....-..++...   ....++....+.. ......+.+........+.
T Consensus        93 gls~~~WSPdgrhiL~tseF~lriTVWSL~t~~~~~~~~pK~~~kg~~f~~dg~f~ai~sRrDCkdyv~i~~c~~W~ll~  172 (447)
T KOG4497|consen   93 GLSSISWSPDGRHILLTSEFDLRITVWSLNTQKGYLLPHPKTNVKGYAFHPDGQFCAILSRRDCKDYVQISSCKAWILLK  172 (447)
T ss_pred             cceeeeECCCcceEeeeecceeEEEEEEeccceeEEecccccCceeEEECCCCceeeeeecccHHHHHHHHhhHHHHHHH
Confidence            5789999999965 557778999999999876433332222211   1222222221111 1112222222233334445


Q ss_pred             ccccccCCeEEEEEecCCCcEEEEEcCCCeEEEEEcCCCCcceEEEeeccCCceeEEEeccCCCCeEEEEcCCCcEEEEe
Q 021657           86 IYNGHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFD  165 (309)
Q Consensus        86 ~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d  165 (309)
                      .+.-.+...+.+.|+|+| +.|         .+||---..  .+. .....-.+..++|+| .+++|++|+.|+.+|+.+
T Consensus       173 ~f~~dT~DltgieWsPdg-~~l---------aVwd~~Ley--kv~-aYe~~lG~k~v~wsP-~~qflavGsyD~~lrvln  238 (447)
T KOG4497|consen  173 EFKLDTIDLTGIEWSPDG-NWL---------AVWDNVLEY--KVY-AYERGLGLKFVEWSP-CNQFLAVGSYDQMLRVLN  238 (447)
T ss_pred             hcCCCcccccCceECCCC-cEE---------EEecchhhh--eee-eeeeccceeEEEecc-ccceEEeeccchhhhhhc
Confidence            555566778999999998 544         457643222  111 122235788999999 999999999999998865


Q ss_pred             cCC---------------CC---------------------------------C------------CCCCCceeeeccCC
Q 021657          166 RRN---------------LT---------------------------------S------------NGVGSPINKFEGHS  185 (309)
Q Consensus       166 ~~~---------------~~---------------------------------~------------~~~~~~~~~~~~~~  185 (309)
                      --+               +.                                 .            ....++...+...+
T Consensus       239 h~tWk~f~eflhl~s~~dp~~~~~~ke~~~~~ql~~~cLsf~p~~~~a~~~~~se~~YE~~~~pv~~~~lkp~tD~pnPk  318 (447)
T KOG4497|consen  239 HFTWKPFGEFLHLCSYHDPTLHLLEKETFSIVQLLHHCLSFTPTDLEAHIWEESETIYEQQMTPVKVHKLKPPTDFPNPK  318 (447)
T ss_pred             eeeeeehhhhccchhccCchhhhhhhhhcchhhhcccccccCCCccccCccccchhhhhhhhcceeeecccCCCCCCCcc
Confidence            322               00                                 0            00011111111223


Q ss_pred             CCeeEEEEecCCCcEEEEecCC--CcEEEEeCCcccccccCCCCCcCCCCceeeeecCCCcceeeEEEccCCCeEEEEec
Q 021657          186 AAVLCVQWSPDKSSVFGSSAED--GLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKVVDFHWNASDPWTVVSVS  263 (309)
Q Consensus       186 ~~v~~~~~~~~~~~l~~~~~~d--g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~s  263 (309)
                      ..+--++|++|..+ +|+-.+.  +.+.+||+++.                .+...-....+|....|+|..+.|++..+
T Consensus       319 ~g~g~lafs~Ds~y-~aTrnd~~PnalW~Wdlq~l----------------~l~avLiQk~piraf~WdP~~prL~vctg  381 (447)
T KOG4497|consen  319 CGAGKLAFSCDSTY-AATRNDKYPNALWLWDLQNL----------------KLHAVLIQKHPIRAFEWDPGRPRLVVCTG  381 (447)
T ss_pred             cccceeeecCCceE-EeeecCCCCceEEEEechhh----------------hhhhhhhhccceeEEEeCCCCceEEEEcC
Confidence            45667999999986 4454422  56999999971                12233345678999999999888775433


Q ss_pred             CCCCCCCCCCeEEEEEcc
Q 021657          264 DDCDSTGGGGTLQIWRMS  281 (309)
Q Consensus       264 ~d~~s~~~dg~v~vw~~~  281 (309)
                      .        ..+++|...
T Consensus       382 ~--------srLY~W~ps  391 (447)
T KOG4497|consen  382 K--------SRLYFWAPS  391 (447)
T ss_pred             C--------ceEEEEcCC
Confidence            2        579999987

>KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]

Probab=99.54  E-value=3.5e-13  Score=101.22  Aligned_cols=233  Identities=15%  Similarity=0.206  Sum_probs=143.9

Q ss_pred             ceEEEEECCCCCEEEEecCCCcEEEEeCCccccccccCCccccccCCCCceeecCCCCCCCCcccCCCCCcCcccccccc
Q 021657           11 AEFALAMCPTEPYVLSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGH   90 (309)
Q Consensus        11 ~V~~~~~~~~~~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   90 (309)
                      .|.++.|+-.|.+|+||..+|.|.++.-...... ....              ...       ..........+..+. -
T Consensus        27 iis~vef~~~Ge~LatGdkgGRVv~f~r~~~~~~-ey~~--------------~t~-------fqshepEFDYLkSle-i   83 (433)
T KOG1354|consen   27 IISAVEFDHYGERLATGDKGGRVVLFEREKLYKG-EYNF--------------QTE-------FQSHEPEFDYLKSLE-I   83 (433)
T ss_pred             ceeeEEeecccceEeecCCCCeEEEeeccccccc-ceee--------------eee-------eeccCcccchhhhhh-h
Confidence            6899999999999999999999999975532110 0000              000       000000111122222 2


Q ss_pred             cCCeEEEEEecCC-CcEEEEEcCCCeEEEEEcCCCCcce----------------------------------EEEeecc
Q 021657           91 EDTVEDVTFCPSS-AQEFCSVGDDSCLILWDARVGTSPV----------------------------------IKVEKAH  135 (309)
Q Consensus        91 ~~~v~~~~~~~~~-~~~l~s~~~dg~i~iwd~~~~~~~~----------------------------------~~~~~~~  135 (309)
                      ...|+.+.|.+++ ...|+..+.|.+|++|-++......                                  ...-.+|
T Consensus        84 eEKinkIrw~~~~n~a~FLlstNdktiKlWKi~er~~k~~~~~~~~~~~~~~~~~lr~p~~~~~~~~vea~prRv~aNaH  163 (433)
T KOG1354|consen   84 EEKINKIRWLDDGNLAEFLLSTNDKTIKLWKIRERGSKKEGYNLPEEGPPGTITSLRLPVEGRHDLEVEASPRRVYANAH  163 (433)
T ss_pred             hhhhhhceecCCCCccEEEEecCCcceeeeeeeccccccccccccccCCCCccceeeceeeccccceeeeeeeeeccccc
Confidence            4568889998764 3457777899999999876432110                                  1112367


Q ss_pred             CCceeEEEeccCCCCeEEEEcCCCcEEEEecCCCCCCCCCCceeeeccC-----CCCeeEEEEecCCCcEEEEecCCCcE
Q 021657          136 DADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGH-----SAAVLCVQWSPDKSSVFGSSAEDGLL  210 (309)
Q Consensus       136 ~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~-----~~~v~~~~~~~~~~~l~~~~~~dg~i  210 (309)
                      .-.|.++.++. +...++++ .|=.|.+|.+.-..+   .-.+..++.+     ..-|++..|+|..-.+|+-.+..|+|
T Consensus       164 tyhiNSIS~Ns-D~Et~lSA-DdLRINLWnlei~d~---sFnIVDIKP~nmEeLteVITsaEFhp~~cn~f~YSSSKGtI  238 (433)
T KOG1354|consen  164 TYHINSISVNS-DKETFLSA-DDLRINLWNLEIIDQ---SFNIVDIKPANMEELTEVITSAEFHPHHCNVFVYSSSKGTI  238 (433)
T ss_pred             eeEeeeeeecC-ccceEeec-cceeeeeccccccCC---ceeEEEccccCHHHHHHHHhhhccCHhHccEEEEecCCCcE
Confidence            77899999998 78888776 577899999876321   1222233322     23588999999887788888889999


Q ss_pred             EEEeCCcccccccC---CCCCcCCCCceeeeecCCCcceeeEEEccCCCeEEEEecCCCCCCCCCCeEEEEEccc
Q 021657          211 NIWDYEKVGKKVEQ---GPRTTNYPAGLFFQHAGHRDKVVDFHWNASDPWTVVSVSDDCDSTGGGGTLQIWRMSD  282 (309)
Q Consensus       211 ~iwd~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~s~d~~s~~~dg~v~vw~~~~  282 (309)
                      ++-|++...-....   .+.+..  +....-+.+--..|.++.|+++|.+++ +-..        -+|++||++.
T Consensus       239 rLcDmR~~aLCd~hsKlfEeped--p~~rsffseiIsSISDvKFs~sGryil-sRDy--------ltvk~wD~nm  302 (433)
T KOG1354|consen  239 RLCDMRQSALCDAHSKLFEEPED--PSSRSFFSEIISSISDVKFSHSGRYIL-SRDY--------LTVKLWDLNM  302 (433)
T ss_pred             EEeechhhhhhcchhhhhccccC--CcchhhHHHHhhhhhceEEccCCcEEE-Eecc--------ceeEEEeccc
Confidence            99999952211110   000000  000111122235789999999888755 3333        5999999963

>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A

Probab=99.52  E-value=1.8e-11  Score=98.45  Aligned_cols=236  Identities=9%  Similarity=0.077  Sum_probs=132.6

Q ss_pred             EEEEECCCCCEEEEecCCCcEEEEeCCccccccccCCccccccCCCCceeecCCCCCCCCcccCCCCCcCcccccccccC
Q 021657           13 FALAMCPTEPYVLSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHED   92 (309)
Q Consensus        13 ~~~~~~~~~~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   92 (309)
                      ..+.|+|||+++.+++.||.|.++|+.+.                                        +.+..+.. ..
T Consensus        40 ~~~~~s~Dgr~~yv~~rdg~vsviD~~~~----------------------------------------~~v~~i~~-G~   78 (369)
T PF02239_consen   40 AGLKFSPDGRYLYVANRDGTVSVIDLATG----------------------------------------KVVATIKV-GG   78 (369)
T ss_dssp             EEEE-TT-SSEEEEEETTSEEEEEETTSS----------------------------------------SEEEEEE--SS
T ss_pred             eEEEecCCCCEEEEEcCCCeEEEEECCcc----------------------------------------cEEEEEec-CC
Confidence            45789999999999999999999999853                                        33344433 23


Q ss_pred             CeEEEEEecCCCcEEEEEcCCCeEEEEEcCCCCcceEEEeec-------cCCceeEEEeccCCCCeE-EEEcCCCcEEEE
Q 021657           93 TVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPVIKVEKA-------HDADLHCVDWNPLDDNLI-LTGSADNSVRMF  164 (309)
Q Consensus        93 ~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~-------~~~~v~~~~~~~~~~~~l-~~~~~dg~i~i~  164 (309)
                      ...+++++++|+.++++...++.+.++|.++.+  .+..+..       ....+.++..+| ....+ ++--..+.|.+.
T Consensus        79 ~~~~i~~s~DG~~~~v~n~~~~~v~v~D~~tle--~v~~I~~~~~~~~~~~~Rv~aIv~s~-~~~~fVv~lkd~~~I~vV  155 (369)
T PF02239_consen   79 NPRGIAVSPDGKYVYVANYEPGTVSVIDAETLE--PVKTIPTGGMPVDGPESRVAAIVASP-GRPEFVVNLKDTGEIWVV  155 (369)
T ss_dssp             EEEEEEE--TTTEEEEEEEETTEEEEEETTT----EEEEEE--EE-TTTS---EEEEEE-S-SSSEEEEEETTTTEEEEE
T ss_pred             CcceEEEcCCCCEEEEEecCCCceeEecccccc--ceeecccccccccccCCCceeEEecC-CCCEEEEEEccCCeEEEE
Confidence            457899999995555566689999999998877  4544432       234567787788 56644 444555889888


Q ss_pred             ecCCCCCCCCCCce-eeeccCCCCeeEEEEecCCCcEEEEecCCCcEEEEeCCcccccccCC----CC---------Cc-
Q 021657          165 DRRNLTSNGVGSPI-NKFEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQG----PR---------TT-  229 (309)
Q Consensus       165 d~~~~~~~~~~~~~-~~~~~~~~~v~~~~~~~~~~~l~~~~~~dg~i~iwd~~~~~~~~~~~----~~---------~~-  229 (309)
                      |...      .+.+ .+............|+|++++++++...++.|-++|.++.+......    +.         .. 
T Consensus       156 dy~d------~~~~~~~~i~~g~~~~D~~~dpdgry~~va~~~sn~i~viD~~~~k~v~~i~~g~~p~~~~~~~~php~~  229 (369)
T PF02239_consen  156 DYSD------PKNLKVTTIKVGRFPHDGGFDPDGRYFLVAANGSNKIAVIDTKTGKLVALIDTGKKPHPGPGANFPHPGF  229 (369)
T ss_dssp             ETTT------SSCEEEEEEE--TTEEEEEE-TTSSEEEEEEGGGTEEEEEETTTTEEEEEEE-SSSBEETTEEEEEETTT
T ss_pred             Eecc------ccccceeeecccccccccccCcccceeeecccccceeEEEeeccceEEEEeeccccccccccccccCCCc
Confidence            9877      3322 22322455678899999999988777777888888887632221100    00         00 


Q ss_pred             --------------------------CCCCceeeeecCCCcceeeEEEccCCCeEEEEecCCCCCCCCCCeEEEEEcccc
Q 021657          230 --------------------------NYPAGLFFQHAGHRDKVVDFHWNASDPWTVVSVSDDCDSTGGGGTLQIWRMSDL  283 (309)
Q Consensus       230 --------------------------~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~s~d~~s~~~dg~v~vw~~~~~  283 (309)
                                                ....+.+..+.....+ .-+..+|+++++.+...    .+...+.|.++|.++ 
T Consensus       230 g~vw~~~~~~~~~~~~ig~~~v~v~d~~~wkvv~~I~~~G~g-lFi~thP~s~~vwvd~~----~~~~~~~v~viD~~t-  303 (369)
T PF02239_consen  230 GPVWATSGLGYFAIPLIGTDPVSVHDDYAWKVVKTIPTQGGG-LFIKTHPDSRYVWVDTF----LNPDADTVQVIDKKT-  303 (369)
T ss_dssp             EEEEEEEBSSSSEEEEEE--TTT-STTTBTSEEEEEE-SSSS---EE--TT-SEEEEE-T----T-SSHT-EEEEECCG-
T ss_pred             ceEEeeccccceecccccCCccccchhhcCeEEEEEECCCCc-ceeecCCCCccEEeecc----CCCCCceEEEEECcC-
Confidence                                      0011122233333334 66778999998887621    122348999999994 


Q ss_pred             ccCChhhHhHhhhccc-ceEEEeeeCC
Q 021657          284 IYRPQDEVLAELEKFK-AHVISCTSKP  309 (309)
Q Consensus       284 ~~~~~~~~~~~~~~h~-~~v~~~~~~P  309 (309)
                           .+.+.++.... ..+..+.|+|
T Consensus       304 -----l~~~~~i~~~~~~~~~h~ef~~  325 (369)
T PF02239_consen  304 -----LKVVKTITPGPGKRVVHMEFNP  325 (369)
T ss_dssp             -----TEEEE-HHHHHT--EEEEEE-T
T ss_pred             -----cceeEEEeccCCCcEeccEECC
Confidence                 44444443222 2355555543

...

>KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only]

Probab=99.52  E-value=8.8e-13  Score=112.17  Aligned_cols=147  Identities=18%  Similarity=0.224  Sum_probs=117.8

Q ss_pred             EecCCCcEEEEEcCCCeEEEEEcCCCCcceEEEeeccCCceeEEEeccCCCCeEEEEcCCCcEEEEecCCCCCCCCCCce
Q 021657           99 FCPSSAQEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPI  178 (309)
Q Consensus        99 ~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~  178 (309)
                      ++++. -++++|+--+.|.+|+....+.  ...+.+|.+.|.++.|+- ++.++++.+.|..+|+|++.+      .+..
T Consensus       141 ~s~~~-~~i~~gsv~~~iivW~~~~dn~--p~~l~GHeG~iF~i~~s~-dg~~i~s~SdDRsiRlW~i~s------~~~~  210 (967)
T KOG0974|consen  141 DSAEE-LYIASGSVFGEIIVWKPHEDNK--PIRLKGHEGSIFSIVTSL-DGRYIASVSDDRSIRLWPIDS------REVL  210 (967)
T ss_pred             ccCcE-EEEEeccccccEEEEeccccCC--cceecccCCceEEEEEcc-CCcEEEEEecCcceeeeeccc------cccc
Confidence            34444 7899999999999999985553  236789999999999999 999999999999999999998      4433


Q ss_pred             e-eeccCCCCeeEEEEecCCCcEEEEecCCCcEEEEeCCcccccccCCCCCcCCCCceeeeecCCC-cceeeEEEccCCC
Q 021657          179 N-KFEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHR-DKVVDFHWNASDP  256 (309)
Q Consensus       179 ~-~~~~~~~~v~~~~~~~~~~~l~~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~v~~~~~~~~~~  256 (309)
                      . ..-+|...+..+.|.|+  . +++++.|.+.++|+...                ..+..+.+|. ..+..++..+...
T Consensus       211 ~~~~fgHsaRvw~~~~~~n--~-i~t~gedctcrvW~~~~----------------~~l~~y~~h~g~~iw~~~~~~~~~  271 (967)
T KOG0974|consen  211 GCTGFGHSARVWACCFLPN--R-IITVGEDCTCRVWGVNG----------------TQLEVYDEHSGKGIWKIAVPIGVI  271 (967)
T ss_pred             CcccccccceeEEEEeccc--e-eEEeccceEEEEEeccc----------------ceehhhhhhhhcceeEEEEcCCce
Confidence            3 66679999999999999  3 56999999999997654                1223556665 4688999988665


Q ss_pred             eEEEEecCCCCCCCCCCeEEEEEccc
Q 021657          257 WTVVSVSDDCDSTGGGGTLQIWRMSD  282 (309)
Q Consensus       257 ~~~~s~s~d~~s~~~dg~v~vw~~~~  282 (309)
                      ..+        |++.|+.+++|++..
T Consensus       272 ~~v--------T~g~Ds~lk~~~l~~  289 (967)
T KOG0974|consen  272 IKV--------TGGNDSTLKLWDLNG  289 (967)
T ss_pred             EEE--------eeccCcchhhhhhhc
Confidence            544        666679999999874

>PRK04922 tolB translocation protein TolB; Provisional

Probab=99.51  E-value=3.2e-12  Score=106.06  Aligned_cols=163  Identities=13%  Similarity=0.162  Sum_probs=105.0

Q ss_pred             ccccccCCeEEEEEecCCCcEEEEEcC---CCeEEEEEcCCCCcceEEEeeccCCceeEEEeccCCCCeEE-EEcCCC--
Q 021657           86 IYNGHEDTVEDVTFCPSSAQEFCSVGD---DSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLIL-TGSADN--  159 (309)
Q Consensus        86 ~~~~~~~~v~~~~~~~~~~~~l~s~~~---dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~-~~~~dg--  159 (309)
                      .+..+...+.+..|+|+| +.|+..+.   +..|.+||+.+++.   ..+........+..|+| +++.++ +.+.+|  
T Consensus       198 ~lt~~~~~v~~p~wSpDg-~~la~~s~~~~~~~l~~~dl~~g~~---~~l~~~~g~~~~~~~Sp-DG~~l~~~~s~~g~~  272 (433)
T PRK04922        198 TILRSAEPILSPAWSPDG-KKLAYVSFERGRSAIYVQDLATGQR---ELVASFRGINGAPSFSP-DGRRLALTLSRDGNP  272 (433)
T ss_pred             EeecCCCccccccCCCCC-CEEEEEecCCCCcEEEEEECCCCCE---EEeccCCCCccCceECC-CCCEEEEEEeCCCCc
Confidence            344566788999999999 55665543   34699999987763   22333344556889999 887665 445555  


Q ss_pred             cEEEEecCCCCCCCCCCceeeeccCCCCeeEEEEecCCCcEEEEecCCCc--EEEEeCCcccccccCCCCCcCCCCceee
Q 021657          160 SVRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAEDGL--LNIWDYEKVGKKVEQGPRTTNYPAGLFF  237 (309)
Q Consensus       160 ~i~i~d~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~dg~--i~iwd~~~~~~~~~~~~~~~~~~~~~~~  237 (309)
                      .|++||+.+      ++ +..+..+.......+|+|||++++.+...+|.  |+++|+.. ++.               .
T Consensus       273 ~Iy~~d~~~------g~-~~~lt~~~~~~~~~~~spDG~~l~f~sd~~g~~~iy~~dl~~-g~~---------------~  329 (433)
T PRK04922        273 EIYVMDLGS------RQ-LTRLTNHFGIDTEPTWAPDGKSIYFTSDRGGRPQIYRVAASG-GSA---------------E  329 (433)
T ss_pred             eEEEEECCC------CC-eEECccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCC-CCe---------------E
Confidence            599999986      44 34455455555678999999987656555665  44455543 111               1


Q ss_pred             eecCCCcceeeEEEccCCCeEEEEecCCCCCCCCCCeEEEEEcc
Q 021657          238 QHAGHRDKVVDFHWNASDPWTVVSVSDDCDSTGGGGTLQIWRMS  281 (309)
Q Consensus       238 ~~~~~~~~v~~~~~~~~~~~~~~s~s~d~~s~~~dg~v~vw~~~  281 (309)
                      .+..+.......+|+|++.+++++...+     .+..|.+||+.
T Consensus       330 ~lt~~g~~~~~~~~SpDG~~Ia~~~~~~-----~~~~I~v~d~~  368 (433)
T PRK04922        330 RLTFQGNYNARASVSPDGKKIAMVHGSG-----GQYRIAVMDLS  368 (433)
T ss_pred             EeecCCCCccCEEECCCCCEEEEEECCC-----CceeEEEEECC
Confidence            1111223345789999999877654322     22479999987

>KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only]

Probab=99.50  E-value=2e-13  Score=122.00  Aligned_cols=187  Identities=20%  Similarity=0.344  Sum_probs=139.3

Q ss_pred             ceEEEEECCCCCEEEEecCCCcEEEEeCCccccccccCCccccccCCCCceeecCCCCCCCCcccCCCCCcCcccccccc
Q 021657           11 AEFALAMCPTEPYVLSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGH   90 (309)
Q Consensus        11 ~V~~~~~~~~~~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   90 (309)
                      .|.++.=+|...+.+||+.||.|++|....+.....+                                      ...+ 
T Consensus      2210 ~v~r~~sHp~~~~Yltgs~dgsv~~~~w~~~~~v~~~--------------------------------------rt~g- 2250 (2439)
T KOG1064|consen 2210 NVRRMTSHPSDPYYLTGSQDGSVRMFEWGHGQQVVCF--------------------------------------RTAG- 2250 (2439)
T ss_pred             ceeeecCCCCCceEEecCCCceEEEEeccCCCeEEEe--------------------------------------eccC-
Confidence            5788888999999999999999999998743221111                                      0112 


Q ss_pred             cCCeEEEEEecCCCcEEEEEcCCCeEEEEEcCCCCcceEEEeeccCCceeEEEeccCCCCeEEEEc---CCCcEEEEecC
Q 021657           91 EDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGS---ADNSVRMFDRR  167 (309)
Q Consensus        91 ~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~---~dg~i~i~d~~  167 (309)
                      +..|+.+.|+.+| +.+..+..||.+.+|... .+  .....+.|....+.+.|-.   ..+++++   .++.+.+||..
T Consensus      2251 ~s~vtr~~f~~qG-nk~~i~d~dg~l~l~q~~-pk--~~~s~qchnk~~~Df~Fi~---s~~~tag~s~d~~n~~lwDtl 2323 (2439)
T KOG1064|consen 2251 NSRVTRSRFNHQG-NKFGIVDGDGDLSLWQAS-PK--PYTSWQCHNKALSDFRFIG---SLLATAGRSSDNRNVCLWDTL 2323 (2439)
T ss_pred             cchhhhhhhcccC-CceeeeccCCceeecccC-Cc--ceeccccCCccccceeeee---hhhhccccCCCCCcccchhcc
Confidence            3778999999999 778899999999999986 33  5677788998888888853   5566654   46899999976


Q ss_pred             CCCCCCCCCceeeeccCCCCeeEEEEecCCCcEEEEecCCCcEEEEeCCcccccccCCCCCcCCCCceeeeecCCCccee
Q 021657          168 NLTSNGVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKVV  247 (309)
Q Consensus       168 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~  247 (309)
                      .+..   ...+.  ..|.+.++++++.|... +|.+|+.+|.|++||++.               .++...++.      
T Consensus      2324 ~~~~---~s~v~--~~H~~gaT~l~~~P~~q-llisggr~G~v~l~D~rq---------------rql~h~~~~------ 2376 (2439)
T KOG1064|consen 2324 LPPM---NSLVH--TCHDGGATVLAYAPKHQ-LLISGGRKGEVCLFDIRQ---------------RQLRHTFQA------ 2376 (2439)
T ss_pred             cCcc---cceee--eecCCCceEEEEcCcce-EEEecCCcCcEEEeehHH---------------HHHHHHhhh------
Confidence            5321   23344  77999999999999988 567999999999999997               222222221      


Q ss_pred             eEEEccCCCeEEEEecCCCCCCCCCCeEEEEEccc
Q 021657          248 DFHWNASDPWTVVSVSDDCDSTGGGGTLQIWRMSD  282 (309)
Q Consensus       248 ~~~~~~~~~~~~~s~s~d~~s~~~dg~v~vw~~~~  282 (309)
                         ++ ...+++        +|+..|.++||++..
T Consensus      2377 ---~~-~~~~f~--------~~ss~g~ikIw~~s~ 2399 (2439)
T KOG1064|consen 2377 ---LD-TREYFV--------TGSSEGNIKIWRLSE 2399 (2439)
T ss_pred             ---hh-hhheee--------ccCcccceEEEEccc
Confidence               33 344444        666679999999993

>KOG1334 consensus WD40 repeat protein [General function prediction only]

Probab=99.49  E-value=3.1e-13  Score=105.90  Aligned_cols=202  Identities=17%  Similarity=0.221  Sum_probs=150.7

Q ss_pred             cccccccccCCeEEEEEecCCCcEEEEEcCCCeEEEEEcCCCCcceEEEeeccCCceeEEEeccCCC-CeEEEEcCCCcE
Q 021657           83 PRGIYNGHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDD-NLILTGSADNSV  161 (309)
Q Consensus        83 ~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~~l~~~~~dg~i  161 (309)
                      ....|..|.+.|+.+.|+..| ..|++|+.|..|.+||...+.. ......+|...|..-.|-|+.+ ..+++++.||.+
T Consensus       134 l~~kL~~H~GcVntV~FN~~G-d~l~SgSDD~~vv~WdW~~~~~-~l~f~SGH~~NvfQaKFiP~s~d~ti~~~s~dgqv  211 (559)
T KOG1334|consen  134 LQKKLNKHKGCVNTVHFNQRG-DVLASGSDDLQVVVWDWVSGSP-KLSFESGHCNNVFQAKFIPFSGDRTIVTSSRDGQV  211 (559)
T ss_pred             hhhcccCCCCccceeeecccC-ceeeccCccceEEeehhhccCc-ccccccccccchhhhhccCCCCCcCceeccccCce
Confidence            345677899999999999998 8999999999999999987773 3445568888888888988544 578889999999


Q ss_pred             EEEecCCCCCCCCCCceeeeccCCCCeeEEEEecCCCcEEEEecCCCcEEEEeCCcccccccCCCCCcCCCCceeeeecC
Q 021657          162 RMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAG  241 (309)
Q Consensus       162 ~i~d~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~  241 (309)
                      ++=.+.....   .+....+..|.++|..++.-|+..+-|.+++.|+.+.-+|++....            ...+.....
T Consensus       212 r~s~i~~t~~---~e~t~rl~~h~g~vhklav~p~sp~~f~S~geD~~v~~~Dlr~~~p------------a~~~~cr~~  276 (559)
T KOG1334|consen  212 RVSEILETGY---VENTKRLAPHEGPVHKLAVEPDSPKPFLSCGEDAVVFHIDLRQDVP------------AEKFVCREA  276 (559)
T ss_pred             eeeeeccccc---eecceecccccCccceeeecCCCCCcccccccccceeeeeeccCCc------------cceeeeecc
Confidence            9877655211   2224456678999999999999999889999999999999987222            222223333


Q ss_pred             CCc---ceeeEEEccCCCeEEEEecCCCCCCCCCCeEEEEEccccccCChhhHhHhhhcc------cceEEEeeeC
Q 021657          242 HRD---KVVDFHWNASDPWTVVSVSDDCDSTGGGGTLQIWRMSDLIYRPQDEVLAELEKF------KAHVISCTSK  308 (309)
Q Consensus       242 ~~~---~v~~~~~~~~~~~~~~s~s~d~~s~~~dg~v~vw~~~~~~~~~~~~~~~~~~~h------~~~v~~~~~~  308 (309)
                      +..   ...+++.+|-..+.++       +||.|..+++||.+..........+..+-.|      .-.|++++++
T Consensus       277 ~~~~~v~L~~Ia~~P~nt~~fa-------VgG~dqf~RvYD~R~~~~e~~n~~~~~f~p~hl~~d~~v~ITgl~Ys  345 (559)
T KOG1334|consen  277 DEKERVGLYTIAVDPRNTNEFA-------VGGSDQFARVYDQRRIDKEENNGVLDKFCPHHLVEDDPVNITGLVYS  345 (559)
T ss_pred             CCccceeeeeEecCCCCccccc-------cCChhhhhhhhcccchhhccccchhhhcCCccccccCcccceeEEec
Confidence            333   5789999999988887       5555699999999876544444444544333      2356777664

>PRK03629 tolB translocation protein TolB; Provisional

Probab=99.49  E-value=1.9e-11  Score=101.07  Aligned_cols=165  Identities=12%  Similarity=0.173  Sum_probs=105.1

Q ss_pred             cccccCCeEEEEEecCCCcEEEEEc---CCCeEEEEEcCCCCcceEEEeeccCCceeEEEeccCCCCeEEEE-cCCC--c
Q 021657           87 YNGHEDTVEDVTFCPSSAQEFCSVG---DDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTG-SADN--S  160 (309)
Q Consensus        87 ~~~~~~~v~~~~~~~~~~~~l~s~~---~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~-~~dg--~  160 (309)
                      +..+...+...+|+|+| +.|+..+   .+..|.+||+.+++...+   ......+..++|+| +++.|+.. ..+|  .
T Consensus       194 lt~~~~~~~~p~wSPDG-~~la~~s~~~g~~~i~i~dl~~G~~~~l---~~~~~~~~~~~~SP-DG~~La~~~~~~g~~~  268 (429)
T PRK03629        194 VHRSPQPLMSPAWSPDG-SKLAYVTFESGRSALVIQTLANGAVRQV---ASFPRHNGAPAFSP-DGSKLAFALSKTGSLN  268 (429)
T ss_pred             eecCCCceeeeEEcCCC-CEEEEEEecCCCcEEEEEECCCCCeEEc---cCCCCCcCCeEECC-CCCEEEEEEcCCCCcE
Confidence            34456789999999999 4455432   345799999987763222   22334456789999 88877754 4455  5


Q ss_pred             EEEEecCCCCCCCCCCceeeeccCCCCeeEEEEecCCCcEEEEecCCCcEEEEeCCcccccccCCCCCcCCCCceeeeec
Q 021657          161 VRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHA  240 (309)
Q Consensus       161 i~i~d~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~  240 (309)
                      |++||+.+      ++. ..+..+...+....|+|||+.++.+...++...||.++..+..              ...+.
T Consensus       269 I~~~d~~t------g~~-~~lt~~~~~~~~~~wSPDG~~I~f~s~~~g~~~Iy~~d~~~g~--------------~~~lt  327 (429)
T PRK03629        269 LYVMDLAS------GQI-RQVTDGRSNNTEPTWFPDSQNLAYTSDQAGRPQVYKVNINGGA--------------PQRIT  327 (429)
T ss_pred             EEEEECCC------CCE-EEccCCCCCcCceEECCCCCEEEEEeCCCCCceEEEEECCCCC--------------eEEee
Confidence            88899986      443 3444444567889999999987655555566666654331111              11122


Q ss_pred             CCCcceeeEEEccCCCeEEEEecCCCCCCCCCCeEEEEEccc
Q 021657          241 GHRDKVVDFHWNASDPWTVVSVSDDCDSTGGGGTLQIWRMSD  282 (309)
Q Consensus       241 ~~~~~v~~~~~~~~~~~~~~s~s~d~~s~~~dg~v~vw~~~~  282 (309)
                      .+........|+|++.+++.+...+     ....|.+||+..
T Consensus       328 ~~~~~~~~~~~SpDG~~Ia~~~~~~-----g~~~I~~~dl~~  364 (429)
T PRK03629        328 WEGSQNQDADVSSDGKFMVMVSSNG-----GQQHIAKQDLAT  364 (429)
T ss_pred             cCCCCccCEEECCCCCEEEEEEccC-----CCceEEEEECCC
Confidence            2333456789999999877655432     234688899873

>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=99.47  E-value=5.3e-13  Score=109.89  Aligned_cols=257  Identities=20%  Similarity=0.316  Sum_probs=174.2

Q ss_pred             ceEEEEECCCCCEEEEecCCCcEEEEeCCccccccccCC------ccccccCCCCceeecCCCCCCCCcccCCCC---Cc
Q 021657           11 AEFALAMCPTEPYVLSGGKDKSVVLWSIQDHITSSATDP------ATAKSAGSSGSIIKQSPKPGDGNDKAADGP---SV   81 (309)
Q Consensus        11 ~V~~~~~~~~~~~l~t~~~dg~i~vwd~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~   81 (309)
                      .+..+.++|.|+-++.++.-|.+ +-|+...........      ..............+..........+|...   ..
T Consensus        26 ~~~a~si~p~grdi~lAsr~gl~-i~dld~p~~ppr~l~h~tpw~vad~qws~h~a~~~wiVsts~qkaiiwnlA~ss~~  104 (1081)
T KOG0309|consen   26 GFNAVSINPSGRDIVLASRQGLY-IIDLDDPFTPPRWLHHITPWQVADVQWSPHPAKPYWIVSTSNQKAIIWNLAKSSSN  104 (1081)
T ss_pred             cccceeeccccchhhhhhhcCeE-EEeccCCCCCceeeeccCcchhcceecccCCCCceeEEecCcchhhhhhhhcCCcc
Confidence            46788999999999999987765 457765422111111      000111111111122222233333444432   22


Q ss_pred             CcccccccccCCeEEEEEecCCCcEEEEEcCCCeEEEEEcCCCCcceEEEeeccCCceeEEEeccCCCCeEEEEcCCCcE
Q 021657           82 GPRGIYNGHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSV  161 (309)
Q Consensus        82 ~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i  161 (309)
                      .....+.+|...|+++.|+|+.+..+++++-|..+..||+++...+ +............++|+..+++.+|+ +....|
T Consensus       105 aIef~lhghsraitd~n~~~q~pdVlatcsvdt~vh~wd~rSp~~p-~ys~~~w~s~asqVkwnyk~p~vlas-shg~~i  182 (1081)
T KOG0309|consen  105 AIEFVLHGHSRAITDINFNPQHPDVLATCSVDTYVHAWDMRSPHRP-FYSTSSWRSAASQVKWNYKDPNVLAS-SHGNDI  182 (1081)
T ss_pred             ceEEEEecCccceeccccCCCCCcceeeccccccceeeeccCCCcc-eeeeecccccCceeeecccCcchhhh-ccCCce
Confidence            3334567899999999999999899999999999999999988754 44555556677899999866666665 456789


Q ss_pred             EEEecCCCCCCCCCCceeeeccCCCCeeEEEEecCCCcEEEEecCCCcEEEEeCCcccccccCCCCC-c-----------
Q 021657          162 RMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRT-T-----------  229 (309)
Q Consensus       162 ~i~d~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~dg~i~iwd~~~~~~~~~~~~~~-~-----------  229 (309)
                      ++||.+..     ..++..+++|-..|+.++|..--...+.+++.|++|+.||..+..+........ .           
T Consensus       183 ~vwd~r~g-----s~pl~s~K~~vs~vn~~~fnr~~~s~~~s~~~d~tvkfw~y~kSt~e~~~~vtt~~piw~~r~~Pfg  257 (1081)
T KOG0309|consen  183 FVWDLRKG-----STPLCSLKGHVSSVNSIDFNRFKYSEIMSSSNDGTVKFWDYSKSTTESKRTVTTNFPIWRGRYLPFG  257 (1081)
T ss_pred             EEEeccCC-----CcceEEecccceeeehHHHhhhhhhhhcccCCCCceeeecccccccccceeccccCcceeccccccC
Confidence            99999985     678999999999999999987544456699999999999987633221110000 0           


Q ss_pred             ----------------------------CCCCceeeeecCCCcceeeEEEccC---------CCeEEEEecCCCCCCCCC
Q 021657          230 ----------------------------NYPAGLFFQHAGHRDKVVDFHWNAS---------DPWTVVSVSDDCDSTGGG  272 (309)
Q Consensus       230 ----------------------------~~~~~~~~~~~~~~~~v~~~~~~~~---------~~~~~~s~s~d~~s~~~d  272 (309)
                                                  ....+++..+.||.+.|....|-..         ..+-+++-|.|       
T Consensus       258 ~g~~~mp~~G~n~v~~~~c~n~d~e~n~~~~~~pVh~F~GH~D~V~eFlWR~r~e~~~d~d~rdfQLVTWSkD-------  330 (1081)
T KOG0309|consen  258 EGYCIMPMVGGNMVPQLRCENSDLEWNVFDLNTPVHTFVGHDDVVLEFLWRKRKECDGDYDSRDFQLVTWSKD-------  330 (1081)
T ss_pred             ceeEeccccCCeeeeeccccchhhhhccccCCcceeeecCcchHHHHHhhhhcccccCCCCccceeEEEeecC-------
Confidence                                        0123467888999999888877532         24677777777       


Q ss_pred             CeEEEEEccc
Q 021657          273 GTLQIWRMSD  282 (309)
Q Consensus       273 g~v~vw~~~~  282 (309)
                      ..+++|.+.+
T Consensus       331 ~~lrlWpI~~  340 (1081)
T KOG0309|consen  331 QTLRLWPIDS  340 (1081)
T ss_pred             CceEeeeccH
Confidence            8999999975

>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]

Probab=99.45  E-value=7e-12  Score=100.62  Aligned_cols=165  Identities=14%  Similarity=0.185  Sum_probs=130.0

Q ss_pred             CCcEEEEEcCCCeEEEEEcCCCCcceEEEeec--c-CCceeEEEe------cc-------------CCCCeEEEEcCCCc
Q 021657          103 SAQEFCSVGDDSCLILWDARVGTSPVIKVEKA--H-DADLHCVDW------NP-------------LDDNLILTGSADNS  160 (309)
Q Consensus       103 ~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~--~-~~~v~~~~~------~~-------------~~~~~l~~~~~dg~  160 (309)
                      +..+||....||.+++||...++.  ...+..  + .+..++..|      +|             .+...++-|...|.
T Consensus         4 ~~~~~A~~~~~g~l~iw~t~~~~~--~~e~~p~~~~s~t~~~~~w~L~~~~s~~k~~~~~~~~~~s~~t~~lvlgt~~g~   81 (541)
T KOG4547|consen    4 ALDYFALSTGDGRLRIWDTAKNQL--QQEFAPIASLSGTCTYTKWGLSADYSPMKWLSLEKAKKASLDTSMLVLGTPQGS   81 (541)
T ss_pred             hhheEeecCCCCeEEEEEccCcee--eeeeccchhccCcceeEEEEEEeccchHHHHhHHHHhhccCCceEEEeecCCcc
Confidence            337899999999999999988773  332221  1 233344444      22             13457888999999


Q ss_pred             EEEEecCCCCCCCCCCceeeec--cCCCCeeEEEEecCCCcEEEEecCCCcEEEEeCCcccccccCCCCCcCCCCceeee
Q 021657          161 VRMFDRRNLTSNGVGSPINKFE--GHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQ  238 (309)
Q Consensus       161 i~i~d~~~~~~~~~~~~~~~~~--~~~~~v~~~~~~~~~~~l~~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~  238 (309)
                      |.+|+...      ++.-..+.  .|.+.|+++.++.+-.++ .+++.|+.+..|+...               ...+..
T Consensus        82 v~~ys~~~------g~it~~~st~~h~~~v~~~~~~~~~~ci-yS~~ad~~v~~~~~~~---------------~~~~~~  139 (541)
T KOG4547|consen   82 VLLYSVAG------GEITAKLSTDKHYGNVNEILDAQRLGCI-YSVGADLKVVYILEKE---------------KVIIRI  139 (541)
T ss_pred             EEEEEecC------CeEEEEEecCCCCCcceeeecccccCce-EecCCceeEEEEeccc---------------ceeeee
Confidence            99999998      77777664  688999999999988864 5999999999999987               456667


Q ss_pred             ecCCCcceeeEEEccCCCeEEEEecCCCCCCCCCCeEEEEEccccccCChhhHhHhhhcccceEEEeee
Q 021657          239 HAGHRDKVVDFHWNASDPWTVVSVSDDCDSTGGGGTLQIWRMSDLIYRPQDEVLAELEKFKAHVISCTS  307 (309)
Q Consensus       239 ~~~~~~~v~~~~~~~~~~~~~~s~s~d~~s~~~dg~v~vw~~~~~~~~~~~~~~~~~~~h~~~v~~~~~  307 (309)
                      ..+....+.++..+||+. +++++|         +.|++||++      +.+.+.+|++|.++|.+++|
T Consensus       140 ~~~~~~~~~sl~is~D~~-~l~~as---------~~ik~~~~~------~kevv~~ftgh~s~v~t~~f  192 (541)
T KOG4547|consen  140 WKEQKPLVSSLCISPDGK-ILLTAS---------RQIKVLDIE------TKEVVITFTGHGSPVRTLSF  192 (541)
T ss_pred             eccCCCccceEEEcCCCC-EEEecc---------ceEEEEEcc------CceEEEEecCCCcceEEEEE
Confidence            778888899999999865 455555         689999999      89999999999999999987

>KOG2041 consensus WD40 repeat protein [General function prediction only]

Probab=99.45  E-value=6.2e-12  Score=103.55  Aligned_cols=254  Identities=15%  Similarity=0.198  Sum_probs=167.8

Q ss_pred             ceEEEEECCCCCEEEEecCCCcEEEEeCCccccccccCCccccccCCCCceeecCCCCCCCCcccCCCCCcCcccccccc
Q 021657           11 AEFALAMCPTEPYVLSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGH   90 (309)
Q Consensus        11 ~V~~~~~~~~~~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   90 (309)
                      ...|++|+....++|.|+.||.++|-.+.+........+                         +....+...-+.+.+|
T Consensus        16 kL~c~~WNke~gyIAcgG~dGlLKVlKl~t~t~d~~~~g-------------------------laa~snLsmNQtLeGH   70 (1189)
T KOG2041|consen   16 KLHCAEWNKESGYIACGGADGLLKVLKLGTDTTDLNKSG-------------------------LAAASNLSMNQTLEGH   70 (1189)
T ss_pred             eEEEEEEcccCCeEEeccccceeEEEEccccCCcccccc-------------------------cccccccchhhhhccC
Confidence            578999999999999999999999999876422211111                         1122334455788999


Q ss_pred             cCCeEEEEEecCCCcEEEEEcCCCeEEEEEcCCCCcceEEEeeccCCceeEEEeccCCCCeEEEEcCCCcEEEEecCCCC
Q 021657           91 EDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLT  170 (309)
Q Consensus        91 ~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~  170 (309)
                      +..|.-+.|+.+. +.|-+...+|.|.+|-+-.+.+-....-...++-|.+|+|+. +|..+.....||.|.+=.+.   
T Consensus        71 ~~sV~vvTWNe~~-QKLTtSDt~GlIiVWmlykgsW~EEMiNnRnKSvV~SmsWn~-dG~kIcIvYeDGavIVGsvd---  145 (1189)
T KOG2041|consen   71 NASVMVVTWNENN-QKLTTSDTSGLIIVWMLYKGSWCEEMINNRNKSVVVSMSWNL-DGTKICIVYEDGAVIVGSVD---  145 (1189)
T ss_pred             cceEEEEEecccc-ccccccCCCceEEEEeeecccHHHHHhhCcCccEEEEEEEcC-CCcEEEEEEccCCEEEEeec---
Confidence            9999999999887 779999999999999998877433333344567899999999 99999999999999887766   


Q ss_pred             CCCCCCceeeeccCCCCeeEEEEecCCCcEEEEecCCCcEEEEeCCccccc-c------------cCCCCCc--------
Q 021657          171 SNGVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKK-V------------EQGPRTT--------  229 (309)
Q Consensus       171 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~dg~i~iwd~~~~~~~-~------------~~~~~~~--------  229 (309)
                          +..+.--.-.......+.|++|.+.++ .+-.+|.+.+||....-.. +            ...+...        
T Consensus       146 ----GNRIwgKeLkg~~l~hv~ws~D~~~~L-f~~ange~hlydnqgnF~~Kl~~~c~Vn~tg~~s~~~~kia~i~w~~g  220 (1189)
T KOG2041|consen  146 ----GNRIWGKELKGQLLAHVLWSEDLEQAL-FKKANGETHLYDNQGNFERKLEKDCEVNGTGIFSNFPTKIAEIEWNTG  220 (1189)
T ss_pred             ----cceecchhcchheccceeecccHHHHH-hhhcCCcEEEecccccHHHhhhhceEEeeeeeecCCCccccceeeccC
Confidence                333433222233455788999998654 6777899999987542110 0            0000000        


Q ss_pred             ----CCCCceeee----------ec----------CCCcceeeEEEccCCCeEEEEecCCCCCCC--CC-CeEEEEEccc
Q 021657          230 ----NYPAGLFFQ----------HA----------GHRDKVVDFHWNASDPWTVVSVSDDCDSTG--GG-GTLQIWRMSD  282 (309)
Q Consensus       230 ----~~~~~~~~~----------~~----------~~~~~v~~~~~~~~~~~~~~s~s~d~~s~~--~d-g~v~vw~~~~  282 (309)
                          ..|..+...          +.          ...-.+....|+++|..| +.++.|. ...  .| +.|.+|..- 
T Consensus       221 ~~~~v~pdrP~lavcy~nGr~QiMR~eND~~Pvv~dtgm~~vgakWnh~G~vL-AvcG~~~-da~~~~d~n~v~Fysp~-  297 (1189)
T KOG2041|consen  221 PYQPVPPDRPRLAVCYANGRMQIMRSENDPEPVVVDTGMKIVGAKWNHNGAVL-AVCGNDS-DADEPTDSNKVHFYSPY-  297 (1189)
T ss_pred             ccccCCCCCCEEEEEEcCceehhhhhcCCCCCeEEecccEeecceecCCCcEE-EEccCcc-cccCccccceEEEeccc-
Confidence                000111000          00          111357889999988754 4555441 111  12 366666554 


Q ss_pred             cccCChhhHhHhhhcccceEEEeeeC
Q 021657          283 LIYRPQDEVLAELEKFKAHVISCTSK  308 (309)
Q Consensus       283 ~~~~~~~~~~~~~~~h~~~v~~~~~~  308 (309)
                            ++.+.+++-....|+++.|-
T Consensus       298 ------G~i~gtlkvpg~~It~lsWE  317 (1189)
T KOG2041|consen  298 ------GHIVGTLKVPGSCITGLSWE  317 (1189)
T ss_pred             ------hhheEEEecCCceeeeeEEc
Confidence                  77788888777888888873

>KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only]

Probab=99.44  E-value=1.9e-12  Score=110.16  Aligned_cols=151  Identities=20%  Similarity=0.350  Sum_probs=123.2

Q ss_pred             EECCCCCEEEEecCCCcEEEEeCCccccccccCCccccccCCCCceeecCCCCCCCCcccCCCCCcCcccccccccCCeE
Q 021657           16 AMCPTEPYVLSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVE   95 (309)
Q Consensus        16 ~~~~~~~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~   95 (309)
                      -++++.-++++|+.-+.|.+|+...                                       ...+. .+.+|.+.|.
T Consensus       140 g~s~~~~~i~~gsv~~~iivW~~~~---------------------------------------dn~p~-~l~GHeG~iF  179 (967)
T KOG0974|consen  140 GDSAEELYIASGSVFGEIIVWKPHE---------------------------------------DNKPI-RLKGHEGSIF  179 (967)
T ss_pred             eccCcEEEEEeccccccEEEEeccc---------------------------------------cCCcc-eecccCCceE
Confidence            3456667888888889999998751                                       11122 5789999999


Q ss_pred             EEEEecCCCcEEEEEcCCCeEEEEEcCCCCcceEEEeeccCCceeEEEeccCCCCeEEEEcCCCcEEEEecCCCCCCCCC
Q 021657           96 DVTFCPSSAQEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVG  175 (309)
Q Consensus        96 ~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~  175 (309)
                      ++.|+.+| .++++.++|.++++|++.+.+... ....+|...+..++|.| +  .+++++.|-+.++|+..       +
T Consensus       180 ~i~~s~dg-~~i~s~SdDRsiRlW~i~s~~~~~-~~~fgHsaRvw~~~~~~-n--~i~t~gedctcrvW~~~-------~  247 (967)
T KOG0974|consen  180 SIVTSLDG-RYIASVSDDRSIRLWPIDSREVLG-CTGFGHSARVWACCFLP-N--RIITVGEDCTCRVWGVN-------G  247 (967)
T ss_pred             EEEEccCC-cEEEEEecCcceeeeecccccccC-cccccccceeEEEEecc-c--eeEEeccceEEEEEecc-------c
Confidence            99999999 899999999999999999988533 35568999999999998 5  99999999999999766       4


Q ss_pred             CceeeeccCC-CCeeEEEEecCCCcEEEEecCCCcEEEEeCCccc
Q 021657          176 SPINKFEGHS-AAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVG  219 (309)
Q Consensus       176 ~~~~~~~~~~-~~v~~~~~~~~~~~l~~~~~~dg~i~iwd~~~~~  219 (309)
                      ..+..+..|. ..+..++..++.. +.++++.|+.+++||+...+
T Consensus       248 ~~l~~y~~h~g~~iw~~~~~~~~~-~~vT~g~Ds~lk~~~l~~r~  291 (967)
T KOG0974|consen  248 TQLEVYDEHSGKGIWKIAVPIGVI-IKVTGGNDSTLKLWDLNGRG  291 (967)
T ss_pred             ceehhhhhhhhcceeEEEEcCCce-EEEeeccCcchhhhhhhccc
Confidence            5566777775 4588888888777 46799999999999987643

>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3

Probab=99.43  E-value=5.3e-10  Score=90.04  Aligned_cols=222  Identities=13%  Similarity=0.177  Sum_probs=136.7

Q ss_pred             eEEEEECCCCCEEEEecC-CCcEEEEeCCcc-ccccccCCccccccCCCCceeecCCCCCCCCcccCCCCCcCccccccc
Q 021657           12 EFALAMCPTEPYVLSGGK-DKSVVLWSIQDH-ITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNG   89 (309)
Q Consensus        12 V~~~~~~~~~~~l~t~~~-dg~i~vwd~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   89 (309)
                      ...++++|++++|+++.. +|.|.++++... ..........   .                        ...-......
T Consensus        89 p~~i~~~~~g~~l~vany~~g~v~v~~l~~~g~l~~~~~~~~---~------------------------~g~g~~~~rq  141 (345)
T PF10282_consen   89 PCHIAVDPDGRFLYVANYGGGSVSVFPLDDDGSLGEVVQTVR---H------------------------EGSGPNPDRQ  141 (345)
T ss_dssp             EEEEEECTTSSEEEEEETTTTEEEEEEECTTSEEEEEEEEEE---S------------------------EEEESSTTTT
T ss_pred             cEEEEEecCCCEEEEEEccCCeEEEEEccCCcccceeeeecc---c------------------------CCCCCccccc
Confidence            357899999999988764 899999999853 1100000000   0                        0000000011


Q ss_pred             ccCCeEEEEEecCCCcEEEEEcCCCeEEEEEcCCCCcce--EEEe-eccCCceeEEEeccCCCCeEE-EEcCCCcEEEEe
Q 021657           90 HEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPV--IKVE-KAHDADLHCVDWNPLDDNLIL-TGSADNSVRMFD  165 (309)
Q Consensus        90 ~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~--~~~~-~~~~~~v~~~~~~~~~~~~l~-~~~~dg~i~i~d  165 (309)
                      ......++.|+|+++.++++.-....|.+|++.......  ...+ .......+.+.|+| +++++. +...++.|.+++
T Consensus       142 ~~~h~H~v~~~pdg~~v~v~dlG~D~v~~~~~~~~~~~l~~~~~~~~~~G~GPRh~~f~p-dg~~~Yv~~e~s~~v~v~~  220 (345)
T PF10282_consen  142 EGPHPHQVVFSPDGRFVYVPDLGADRVYVYDIDDDTGKLTPVDSIKVPPGSGPRHLAFSP-DGKYAYVVNELSNTVSVFD  220 (345)
T ss_dssp             SSTCEEEEEE-TTSSEEEEEETTTTEEEEEEE-TTS-TEEEEEEEECSTTSSEEEEEE-T-TSSEEEEEETTTTEEEEEE
T ss_pred             ccccceeEEECCCCCEEEEEecCCCEEEEEEEeCCCceEEEeeccccccCCCCcEEEEcC-CcCEEEEecCCCCcEEEEe
Confidence            234567899999995555555556689999997665212  1222 23445678999999 777664 455688999999


Q ss_pred             cCCCCCCCCCCceeeeccC------CCCeeEEEEecCCCcEEEEecCCCcEEEEeCCcccccccCCCCCcCCCCceeeee
Q 021657          166 RRNLTSNGVGSPINKFEGH------SAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQH  239 (309)
Q Consensus       166 ~~~~~~~~~~~~~~~~~~~------~~~v~~~~~~~~~~~l~~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~  239 (309)
                      +.....  ..+.+..+...      ......|+++|||++|+++...++.|.+|+++.....           ...+...
T Consensus       221 ~~~~~g--~~~~~~~~~~~~~~~~~~~~~~~i~ispdg~~lyvsnr~~~sI~vf~~d~~~g~-----------l~~~~~~  287 (345)
T PF10282_consen  221 YDPSDG--SLTEIQTISTLPEGFTGENAPAEIAISPDGRFLYVSNRGSNSISVFDLDPATGT-----------LTLVQTV  287 (345)
T ss_dssp             EETTTT--EEEEEEEEESCETTSCSSSSEEEEEE-TTSSEEEEEECTTTEEEEEEECTTTTT-----------EEEEEEE
T ss_pred             ecccCC--ceeEEEEeeeccccccccCCceeEEEecCCCEEEEEeccCCEEEEEEEecCCCc-----------eEEEEEE
Confidence            983210  01222222211      1257889999999999988888999999999542211           1223333


Q ss_pred             cCCCcceeeEEEccCCCeEEEEecCCCCCCCCCCeEEEEEcc
Q 021657          240 AGHRDKVVDFHWNASDPWTVVSVSDDCDSTGGGGTLQIWRMS  281 (309)
Q Consensus       240 ~~~~~~v~~~~~~~~~~~~~~s~s~d~~s~~~dg~v~vw~~~  281 (309)
                      .........++++|++.+|+++.-.+       +.|.+|+++
T Consensus       288 ~~~G~~Pr~~~~s~~g~~l~Va~~~s-------~~v~vf~~d  322 (345)
T PF10282_consen  288 PTGGKFPRHFAFSPDGRYLYVANQDS-------NTVSVFDID  322 (345)
T ss_dssp             EESSSSEEEEEE-TTSSEEEEEETTT-------TEEEEEEEE
T ss_pred             eCCCCCccEEEEeCCCCEEEEEecCC-------CeEEEEEEe
Confidence            33344578999999999999866655       899999986

1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.

>KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown]

Probab=99.43  E-value=9.3e-12  Score=93.68  Aligned_cols=163  Identities=17%  Similarity=0.194  Sum_probs=114.1

Q ss_pred             cccCCCCCcceEEEEECCCCCEEEEecCCCcEEEEeCCccccccccCCccccccCCCCceeecCCCCCCCCc--ccCCCC
Q 021657            2 EILTGHQDNAEFALAMCPTEPYVLSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGND--KAADGP   79 (309)
Q Consensus         2 ~~l~~H~~~~V~~~~~~~~~~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~   79 (309)
                      +....|.. .|..+-|+-..+++++.+.|..+.---.+.+............... ...+.....+...+.+  .-....
T Consensus       108 r~~~~h~~-~v~~~if~~~~e~V~s~~~dk~~~~hc~e~~~~lg~Y~~~~~~t~~-~~d~~~~fvGd~~gqvt~lr~~~~  185 (404)
T KOG1409|consen  108 KDYLAHQA-RVSAIVFSLTHEWVLSTGKDKQFAWHCTESGNRLGGYNFETPASAL-QFDALYAFVGDHSGQITMLKLEQN  185 (404)
T ss_pred             hhhhhhhc-ceeeEEecCCceeEEEeccccceEEEeeccCCcccceEeeccCCCC-ceeeEEEEecccccceEEEEEeec
Confidence            45667888 8999999999999999999988743333332211111111111100 0011122222223332  223344


Q ss_pred             CcCcccccccccCCeEEEEEecCCCcEEEEEcCCCeEEEEEcCCCCcceEEEeeccCCceeEEEeccCCCCeEEEEcCCC
Q 021657           80 SVGPRGIYNGHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADN  159 (309)
Q Consensus        80 ~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg  159 (309)
                      ...++..+.+|.+.+.+++|.+.. .+|.+|..|..+.+||+.-.+ .....+.+|...|..++..+ .-..+++++.||
T Consensus       186 ~~~~i~~~~~h~~~~~~l~Wd~~~-~~LfSg~~d~~vi~wdigg~~-g~~~el~gh~~kV~~l~~~~-~t~~l~S~~edg  262 (404)
T KOG1409|consen  186 GCQLITTFNGHTGEVTCLKWDPGQ-RLLFSGASDHSVIMWDIGGRK-GTAYELQGHNDKVQALSYAQ-HTRQLISCGEDG  262 (404)
T ss_pred             CCceEEEEcCcccceEEEEEcCCC-cEEEeccccCceEEEeccCCc-ceeeeeccchhhhhhhhhhh-hheeeeeccCCC
Confidence            566778889999999999999977 889999999999999996554 35677789999999999988 788999999999


Q ss_pred             cEEEEecCCC
Q 021657          160 SVRMFDRRNL  169 (309)
Q Consensus       160 ~i~i~d~~~~  169 (309)
                      .|.+||+...
T Consensus       263 ~i~~w~mn~~  272 (404)
T KOG1409|consen  263 GIVVWNMNVK  272 (404)
T ss_pred             eEEEEeccce
Confidence            9999998753

>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]

Probab=99.42  E-value=6.1e-12  Score=93.61  Aligned_cols=242  Identities=14%  Similarity=0.201  Sum_probs=145.0

Q ss_pred             ceEEEEECCCCCEEEEecCCCcEEEEeCCccccccc-cCCccccccCCCCceeecCCCCCCCCcccCCCCCcCccccccc
Q 021657           11 AEFALAMCPTEPYVLSGGKDKSVVLWSIQDHITSSA-TDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNG   89 (309)
Q Consensus        11 ~V~~~~~~~~~~~l~t~~~dg~i~vwd~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   89 (309)
                      .|+++.|...|.||+||..-|.|.+|.-+....... +-.   ...+..                    .....+..+. 
T Consensus        28 ~ItaVefd~tg~YlatGDkgGRVvlfer~~s~~ceykf~t---eFQshe--------------------~EFDYLkSle-   83 (460)
T COG5170          28 KITAVEFDETGLYLATGDKGGRVVLFEREKSYGCEYKFFT---EFQSHE--------------------LEFDYLKSLE-   83 (460)
T ss_pred             eeeEEEeccccceEeecCCCceEEEeecccccccchhhhh---hhcccc--------------------cchhhhhhcc-
Confidence            689999999999999999999999998654210000 000   000000                    0011111111 


Q ss_pred             ccCCeEEEEEecC-CCcEEEEEcCCCeEEEEEcCCCCc-----------------------------------------c
Q 021657           90 HEDTVEDVTFCPS-SAQEFCSVGDDSCLILWDARVGTS-----------------------------------------P  127 (309)
Q Consensus        90 ~~~~v~~~~~~~~-~~~~l~s~~~dg~i~iwd~~~~~~-----------------------------------------~  127 (309)
                      -...|..+.|..+ +...|+..+.|.+|++|.+.....                                         +
T Consensus        84 ieEKin~I~w~~~t~r~hFLlstNdktiKlWKiyeknlk~va~nnls~~~~~~~~g~~~s~~~l~lprls~hd~iiaa~p  163 (460)
T COG5170          84 IEEKINAIEWFDDTGRNHFLLSTNDKTIKLWKIYEKNLKVVAENNLSDSFHSPMGGPLTSTKELLLPRLSEHDEIIAAKP  163 (460)
T ss_pred             HHHHhhheeeecCCCcceEEEecCCceeeeeeeecccchhhhccccccccccccCCCcCCHHHhhcccccccceEEEecc
Confidence            2346788888644 456677788999999998754310                                         0


Q ss_pred             eEEEeeccCCceeEEEeccCCCCeEEEEcCCCcEEEEecCCCCCCCCCCceeeeccCC-----CCeeEEEEecCCCcEEE
Q 021657          128 VIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGHS-----AAVLCVQWSPDKSSVFG  202 (309)
Q Consensus       128 ~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~-----~~v~~~~~~~~~~~l~~  202 (309)
                      .......|...|.++.++. +...++++ .|=.|.+|++.-...   .-.+..++.|.     .-|++..|+|....++.
T Consensus       164 ~rvyaNaH~yhiNSiS~Ns-D~et~lSa-DdLrINLWnl~i~D~---sFnIVDiKP~nmeeLteVItSaeFhp~~cn~fm  238 (460)
T COG5170         164 CRVYANAHPYHINSISFNS-DKETLLSA-DDLRINLWNLEIIDG---SFNIVDIKPHNMEELTEVITSAEFHPEMCNVFM  238 (460)
T ss_pred             ceeccccceeEeeeeeecC-chheeeec-cceeeeeccccccCC---ceEEEeccCccHHHHHHHHhhcccCHhHcceEE
Confidence            1111246777888999987 66666665 677899999876421   22233334333     35889999998777777


Q ss_pred             EecCCCcEEEEeCCcccccccCCCCCcCCC-CceeeeecCCCcceeeEEEccCCCeEEEEecCCCCCCCCCCeEEEEEcc
Q 021657          203 SSAEDGLLNIWDYEKVGKKVEQGPRTTNYP-AGLFFQHAGHRDKVVDFHWNASDPWTVVSVSDDCDSTGGGGTLQIWRMS  281 (309)
Q Consensus       203 ~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~s~d~~s~~~dg~v~vw~~~  281 (309)
                      -.+..|.|++-|++................ +.-.--+.+-...|.++.|+++|+++ ++-+.        -+|++||++
T Consensus       239 YSsSkG~Ikl~DlRq~alcdn~~klfe~~~D~v~~~ff~eivsSISD~kFs~ngryI-lsRdy--------ltvkiwDvn  309 (460)
T COG5170         239 YSSSKGEIKLNDLRQSALCDNSKKLFELTIDGVDVDFFEEIVSSISDFKFSDNGRYI-LSRDY--------LTVKIWDVN  309 (460)
T ss_pred             EecCCCcEEehhhhhhhhccCchhhhhhccCcccchhHHHHhhhhcceEEcCCCcEE-EEecc--------ceEEEEecc
Confidence            778899999999995221111000000000 00011122234578999999988764 44444        599999998


Q ss_pred             ccccCChhhHhHhh
Q 021657          282 DLIYRPQDEVLAEL  295 (309)
Q Consensus       282 ~~~~~~~~~~~~~~  295 (309)
                      .     ...|++++
T Consensus       310 m-----~k~pikTi  318 (460)
T COG5170         310 M-----AKNPIKTI  318 (460)
T ss_pred             c-----ccCCceee
Confidence            5     34455544

>KOG2321 consensus WD40 repeat protein [General function prediction only]

Probab=99.42  E-value=1.9e-11  Score=97.98  Aligned_cols=244  Identities=13%  Similarity=0.172  Sum_probs=156.2

Q ss_pred             CCCCc-ceEEEEECCCCCEEEEecCCCcEEEEeCCccccccccCC-cc-ccccCCCCceeecCCCCCCCCcccCCCCCcC
Q 021657            6 GHQDN-AEFALAMCPTEPYVLSGGKDKSVVLWSIQDHITSSATDP-AT-AKSAGSSGSIIKQSPKPGDGNDKAADGPSVG   82 (309)
Q Consensus         6 ~H~~~-~V~~~~~~~~~~~l~t~~~dg~i~vwd~~~~~~~~~~~~-~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   82 (309)
                      .|.++ .|.-.-++.|-..++---.|++|.+-..-..-....... .. .........+   ..+..+..++..++..++
T Consensus        90 RhlDae~V~feiLsDD~SK~v~L~~DR~IefHak~G~hy~~RIP~~GRDm~y~~~scDl---y~~gsg~evYRlNLEqGr  166 (703)
T KOG2321|consen   90 RHLDAEVVDFEILSDDYSKSVFLQNDRTIEFHAKYGRHYRTRIPKFGRDMKYHKPSCDL---YLVGSGSEVYRLNLEQGR  166 (703)
T ss_pred             ecccccceeEEEeccchhhheEeecCceeeehhhcCeeeeeecCcCCccccccCCCccE---EEeecCcceEEEEccccc
Confidence            34443 344444555655566666678887765433211111000 00 0000001111   112234456666778888


Q ss_pred             cccccccccCCeEEEEEecCCCcEEEEEcCCCeEEEEEcCCCCcceEEEe------eccCC-----ceeEEEeccCCCCe
Q 021657           83 PRGIYNGHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPVIKVE------KAHDA-----DLHCVDWNPLDDNL  151 (309)
Q Consensus        83 ~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~------~~~~~-----~v~~~~~~~~~~~~  151 (309)
                      .+..+....+.++++..++-. .+|++|+.+|.|..||.+....  +..+      ..|..     .|+++.|+. +|-.
T Consensus       167 fL~P~~~~~~~lN~v~in~~h-gLla~Gt~~g~VEfwDpR~ksr--v~~l~~~~~v~s~pg~~~~~svTal~F~d-~gL~  242 (703)
T KOG2321|consen  167 FLNPFETDSGELNVVSINEEH-GLLACGTEDGVVEFWDPRDKSR--VGTLDAASSVNSHPGGDAAPSVTALKFRD-DGLH  242 (703)
T ss_pred             cccccccccccceeeeecCcc-ceEEecccCceEEEecchhhhh--heeeecccccCCCccccccCcceEEEecC-Ccee
Confidence            888888888999999999988 7899999999999999987652  2222      22333     499999998 8999


Q ss_pred             EEEEcCCCcEEEEecCCCCCCCCCCceeee-ccCCCCeeEEEEecCCC-cEEEEecCCCcEEEEeCCcccccccCCCCCc
Q 021657          152 ILTGSADNSVRMFDRRNLTSNGVGSPINKF-EGHSAAVLCVQWSPDKS-SVFGSSAEDGLLNIWDYEKVGKKVEQGPRTT  229 (309)
Q Consensus       152 l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~-~~~~~~v~~~~~~~~~~-~l~~~~~~dg~i~iwd~~~~~~~~~~~~~~~  229 (309)
                      +++|+.+|.+.|||+|+      .+++..- .+..-+|..+.|.+.+. ..+ .......++|||-.. ++.        
T Consensus       243 ~aVGts~G~v~iyDLRa------~~pl~~kdh~~e~pi~~l~~~~~~~q~~v-~S~Dk~~~kiWd~~~-Gk~--------  306 (703)
T KOG2321|consen  243 VAVGTSTGSVLIYDLRA------SKPLLVKDHGYELPIKKLDWQDTDQQNKV-VSMDKRILKIWDECT-GKP--------  306 (703)
T ss_pred             EEeeccCCcEEEEEccc------CCceeecccCCccceeeecccccCCCceE-EecchHHhhhccccc-CCc--------
Confidence            99999999999999999      5555433 34456899999977532 234 344467899999877 222        


Q ss_pred             CCCCceeeeecCCCcceeeEEEccCCCeEEEEecCCCCCCCCCCeEEEEEccccccCC
Q 021657          230 NYPAGLFFQHAGHRDKVVDFHWNASDPWTVVSVSDDCDSTGGGGTLQIWRMSDLIYRP  287 (309)
Q Consensus       230 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~s~d~~s~~~dg~v~vw~~~~~~~~~  287 (309)
                            . ........++.+++-|+.+.++        ++-.++.+..|=+..+.+.|
T Consensus       307 ------~-asiEpt~~lND~C~~p~sGm~f--------~Ane~~~m~~yyiP~LGPaP  349 (703)
T KOG2321|consen  307 ------M-ASIEPTSDLNDFCFVPGSGMFF--------TANESSKMHTYYIPSLGPAP  349 (703)
T ss_pred             ------e-eeccccCCcCceeeecCCceEE--------EecCCCcceeEEccccCCCc
Confidence                  2 2233455699999999777555        44444788888777654443

>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A

Probab=99.39  E-value=3.1e-10  Score=91.40  Aligned_cols=170  Identities=12%  Similarity=0.175  Sum_probs=110.5

Q ss_pred             cCcccccccccCCeEEEEEecCCCcEEEEEcCCCeEEEEEcCCCCcceEEEeeccCCceeEEEeccCCCCeEEEEc-CCC
Q 021657           81 VGPRGIYNGHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGS-ADN  159 (309)
Q Consensus        81 ~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~-~dg  159 (309)
                      .+.+..+......-..+.|+|++ +++++++.||.|.++|+.+.+  .+...... ....++++++ ++++++++. .++
T Consensus        26 ~~~~~~i~~~~~~h~~~~~s~Dg-r~~yv~~rdg~vsviD~~~~~--~v~~i~~G-~~~~~i~~s~-DG~~~~v~n~~~~  100 (369)
T PF02239_consen   26 NKVVARIPTGGAPHAGLKFSPDG-RYLYVANRDGTVSVIDLATGK--VVATIKVG-GNPRGIAVSP-DGKYVYVANYEPG  100 (369)
T ss_dssp             -SEEEEEE-STTEEEEEE-TT-S-SEEEEEETTSEEEEEETTSSS--EEEEEE-S-SEEEEEEE---TTTEEEEEEEETT
T ss_pred             CeEEEEEcCCCCceeEEEecCCC-CEEEEEcCCCeEEEEECCccc--EEEEEecC-CCcceEEEcC-CCCEEEEEecCCC
Confidence            33444554443334457799998 677777899999999999988  56666543 4568899999 999888775 589


Q ss_pred             cEEEEecCCCCCCCCCCceeeeccC-------CCCeeEEEEecCCCcEEEEecCCCcEEEEeCCcccccccCCCCCcCCC
Q 021657          160 SVRMFDRRNLTSNGVGSPINKFEGH-------SAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYP  232 (309)
Q Consensus       160 ~i~i~d~~~~~~~~~~~~~~~~~~~-------~~~v~~~~~~~~~~~l~~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~  232 (309)
                      .+.++|.++      .+++..+...       ...+..|..+|....++++--+.+.|.+-|......            
T Consensus       101 ~v~v~D~~t------le~v~~I~~~~~~~~~~~~Rv~aIv~s~~~~~fVv~lkd~~~I~vVdy~d~~~------------  162 (369)
T PF02239_consen  101 TVSVIDAET------LEPVKTIPTGGMPVDGPESRVAAIVASPGRPEFVVNLKDTGEIWVVDYSDPKN------------  162 (369)
T ss_dssp             EEEEEETTT--------EEEEEE--EE-TTTS---EEEEEE-SSSSEEEEEETTTTEEEEEETTTSSC------------
T ss_pred             ceeEecccc------ccceeecccccccccccCCCceeEEecCCCCEEEEEEccCCeEEEEEeccccc------------
Confidence            999999999      7888877532       345778888888885454555568888888776311            


Q ss_pred             CceeeeecCCCcceeeEEEccCCCeEEEEecCCCCCCCCCCeEEEEEccc
Q 021657          233 AGLFFQHAGHRDKVVDFHWNASDPWTVVSVSDDCDSTGGGGTLQIWRMSD  282 (309)
Q Consensus       233 ~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~s~d~~s~~~dg~v~vw~~~~  282 (309)
                        +............+..|+|++.+++++....       +.|-++|...
T Consensus       163 --~~~~~i~~g~~~~D~~~dpdgry~~va~~~s-------n~i~viD~~~  203 (369)
T PF02239_consen  163 --LKVTTIKVGRFPHDGGFDPDGRYFLVAANGS-------NKIAVIDTKT  203 (369)
T ss_dssp             --EEEEEEE--TTEEEEEE-TTSSEEEEEEGGG-------TEEEEEETTT
T ss_pred             --cceeeecccccccccccCcccceeeeccccc-------ceeEEEeecc
Confidence              1222223344567899999999988765554       6899999884

...

>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3

Probab=99.39  E-value=1.4e-09  Score=87.55  Aligned_cols=213  Identities=10%  Similarity=0.148  Sum_probs=131.9

Q ss_pred             EEEEECCCCCEEEEecC----CCcEEEEeCCccccccccCCccccccCCCCceeecCCCCCCCCcccCCCCCcCcccccc
Q 021657           13 FALAMCPTEPYVLSGGK----DKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYN   88 (309)
Q Consensus        13 ~~~~~~~~~~~l~t~~~----dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   88 (309)
                      .-++++|++++|.+...    +|.|..|++....                                    .+...+....
T Consensus        40 s~l~~~~~~~~LY~~~e~~~~~g~v~~~~i~~~~------------------------------------g~L~~~~~~~   83 (345)
T PF10282_consen   40 SWLAVSPDGRRLYVVNEGSGDSGGVSSYRIDPDT------------------------------------GTLTLLNSVP   83 (345)
T ss_dssp             CCEEE-TTSSEEEEEETTSSTTTEEEEEEEETTT------------------------------------TEEEEEEEEE
T ss_pred             ceEEEEeCCCEEEEEEccccCCCCEEEEEECCCc------------------------------------ceeEEeeeec
Confidence            45778888888877665    5678888876420                                    0111222222


Q ss_pred             cccCCeEEEEEecCCCcEEEEEcCCCeEEEEEcCCCCcceEE--Eee----------ccCCceeEEEeccCCCCeEEEEc
Q 021657           89 GHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPVIK--VEK----------AHDADLHCVDWNPLDDNLILTGS  156 (309)
Q Consensus        89 ~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~--~~~----------~~~~~v~~~~~~~~~~~~l~~~~  156 (309)
                      ........++++|++..++++...+|.|.++++.........  ...          .......++.++| +++++++..
T Consensus        84 ~~g~~p~~i~~~~~g~~l~vany~~g~v~v~~l~~~g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~p-dg~~v~v~d  162 (345)
T PF10282_consen   84 SGGSSPCHIAVDPDGRFLYVANYGGGSVSVFPLDDDGSLGEVVQTVRHEGSGPNPDRQEGPHPHQVVFSP-DGRFVYVPD  162 (345)
T ss_dssp             ESSSCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSEEEEEEEEEESEEEESSTTTTSSTCEEEEEE-T-TSSEEEEEE
T ss_pred             cCCCCcEEEEEecCCCEEEEEEccCCeEEEEEccCCcccceeeeecccCCCCCcccccccccceeEEECC-CCCEEEEEe
Confidence            233455679999999555666667999999999874311111  110          1234578999999 888777754


Q ss_pred             C-CCcEEEEecCCCCCCCCCCc--eeeec-cCCCCeeEEEEecCCCcEEEEecCCCcEEEEeCCcccccccCCCCCcCCC
Q 021657          157 A-DNSVRMFDRRNLTSNGVGSP--INKFE-GHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYP  232 (309)
Q Consensus       157 ~-dg~i~i~d~~~~~~~~~~~~--~~~~~-~~~~~v~~~~~~~~~~~l~~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~  232 (309)
                      . ...|++|++....    ++.  ...+. ......+.++|+|++++++++.-.++.|.+|++.........        
T Consensus       163 lG~D~v~~~~~~~~~----~~l~~~~~~~~~~G~GPRh~~f~pdg~~~Yv~~e~s~~v~v~~~~~~~g~~~~--------  230 (345)
T PF10282_consen  163 LGADRVYVYDIDDDT----GKLTPVDSIKVPPGSGPRHLAFSPDGKYAYVVNELSNTVSVFDYDPSDGSLTE--------  230 (345)
T ss_dssp             TTTTEEEEEEE-TTS-----TEEEEEEEECSTTSSEEEEEE-TTSSEEEEEETTTTEEEEEEEETTTTEEEE--------
T ss_pred             cCCCEEEEEEEeCCC----ceEEEeeccccccCCCCcEEEEcCCcCEEEEecCCCCcEEEEeecccCCceeE--------
Confidence            3 4589999998732    112  12222 234567899999999999989989999999999831111110        


Q ss_pred             Cceeeeec---CCCcceeeEEEccCCCeEEEEecCCCCCCCCCCeEEEEEcc
Q 021657          233 AGLFFQHA---GHRDKVVDFHWNASDPWTVVSVSDDCDSTGGGGTLQIWRMS  281 (309)
Q Consensus       233 ~~~~~~~~---~~~~~v~~~~~~~~~~~~~~s~s~d~~s~~~dg~v~vw~~~  281 (309)
                      .+.+..+.   ........++++|++++++++.-..       +.|.+|+++
T Consensus       231 ~~~~~~~~~~~~~~~~~~~i~ispdg~~lyvsnr~~-------~sI~vf~~d  275 (345)
T PF10282_consen  231 IQTISTLPEGFTGENAPAEIAISPDGRFLYVSNRGS-------NSISVFDLD  275 (345)
T ss_dssp             EEEEESCETTSCSSSSEEEEEE-TTSSEEEEEECTT-------TEEEEEEEC
T ss_pred             EEEeeeccccccccCCceeEEEecCCCEEEEEeccC-------CEEEEEEEe
Confidence            01111111   1112578899999999999866544       799999995

1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.

>KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]

Probab=99.39  E-value=1.9e-11  Score=92.17  Aligned_cols=252  Identities=17%  Similarity=0.263  Sum_probs=143.2

Q ss_pred             ceEEEEECCCCC--EEEEecCCCcEEEEeCCccccccccCCccccccCCC-CceeecCCCCCCCCcccCCCCCcCccccc
Q 021657           11 AEFALAMCPTEP--YVLSGGKDKSVVLWSIQDHITSSATDPATAKSAGSS-GSIIKQSPKPGDGNDKAADGPSVGPRGIY   87 (309)
Q Consensus        11 ~V~~~~~~~~~~--~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   87 (309)
                      .|..+.|.++++  .++..+.|.+|++|.+.................... ..+.....+..+..      ....+.+.+
T Consensus        86 KinkIrw~~~~n~a~FLlstNdktiKlWKi~er~~k~~~~~~~~~~~~~~~~~lr~p~~~~~~~~------vea~prRv~  159 (433)
T KOG1354|consen   86 KINKIRWLDDGNLAEFLLSTNDKTIKLWKIRERGSKKEGYNLPEEGPPGTITSLRLPVEGRHDLE------VEASPRRVY  159 (433)
T ss_pred             hhhhceecCCCCccEEEEecCCcceeeeeeeccccccccccccccCCCCccceeeceeeccccce------eeeeeeeec
Confidence            478889988764  577888899999999976532221100000000000 00000000000000      011122222


Q ss_pred             -ccccCCeEEEEEecCCCcEEEEEcCCCeEEEEEcCCCCcc-eEEEeecc-----CCceeEEEeccCCCCeEEEEcCCCc
Q 021657           88 -NGHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSP-VIKVEKAH-----DADLHCVDWNPLDDNLILTGSADNS  160 (309)
Q Consensus        88 -~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~-~~~~~~~~-----~~~v~~~~~~~~~~~~l~~~~~dg~  160 (309)
                       ..|+-.|+++.++.|. ..++++ +|-.|.+|+++-..+. -+.-.+.+     ..-|++..|+|...+.|+-.+..|+
T Consensus       160 aNaHtyhiNSIS~NsD~-Et~lSA-DdLRINLWnlei~d~sFnIVDIKP~nmEeLteVITsaEFhp~~cn~f~YSSSKGt  237 (433)
T KOG1354|consen  160 ANAHTYHINSISVNSDK-ETFLSA-DDLRINLWNLEIIDQSFNIVDIKPANMEELTEVITSAEFHPHHCNVFVYSSSKGT  237 (433)
T ss_pred             cccceeEeeeeeecCcc-ceEeec-cceeeeeccccccCCceeEEEccccCHHHHHHHHhhhccCHhHccEEEEecCCCc
Confidence             4688899999999988 556554 6789999998754321 11122222     2458899999988889999999999


Q ss_pred             EEEEecCCCCCCCCCCcee----------eeccCCCCeeEEEEecCCCcEEEEecCCCcEEEEeCCcccccccCCCCCcC
Q 021657          161 VRMFDRRNLTSNGVGSPIN----------KFEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTN  230 (309)
Q Consensus       161 i~i~d~~~~~~~~~~~~~~----------~~~~~~~~v~~~~~~~~~~~l~~~~~~dg~i~iwd~~~~~~~~~~~~~~~~  230 (309)
                      |++.|+|..........+.          -|..--..|..+.|+++|++++ +-. --+|++||+....++....+....
T Consensus       238 IrLcDmR~~aLCd~hsKlfEepedp~~rsffseiIsSISDvKFs~sGryil-sRD-yltvk~wD~nme~~pv~t~~vh~~  315 (433)
T KOG1354|consen  238 IRLCDMRQSALCDAHSKLFEEPEDPSSRSFFSEIISSISDVKFSHSGRYIL-SRD-YLTVKLWDLNMEAKPVETYPVHEY  315 (433)
T ss_pred             EEEeechhhhhhcchhhhhccccCCcchhhHHHHhhhhhceEEccCCcEEE-Eec-cceeEEEeccccCCcceEEeehHh
Confidence            9999999632110011111          1111224678899999999754 433 378999999775554332221110


Q ss_pred             CCCceeeeecCCCcc---eeeEEEccCCCeEEEEecCCCCCCCCCCeEEEEEccc
Q 021657          231 YPAGLFFQHAGHRDK---VVDFHWNASDPWTVVSVSDDCDSTGGGGTLQIWRMSD  282 (309)
Q Consensus       231 ~~~~~~~~~~~~~~~---v~~~~~~~~~~~~~~s~s~d~~s~~~dg~v~vw~~~~  282 (309)
                      -...+ ..+.. +..   -..++|+-++.+++        ||+..+.++++++..
T Consensus       316 lr~kL-c~lYE-nD~IfdKFec~~sg~~~~v~--------TGsy~n~frvf~~~~  360 (433)
T KOG1354|consen  316 LRSKL-CSLYE-NDAIFDKFECSWSGNDSYVM--------TGSYNNVFRVFNLAR  360 (433)
T ss_pred             HHHHH-HHHhh-ccchhheeEEEEcCCcceEe--------cccccceEEEecCCC
Confidence            00000 00000 112   24678888777655        666679999999653

>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]

Probab=99.35  E-value=3.7e-09  Score=80.69  Aligned_cols=220  Identities=12%  Similarity=0.180  Sum_probs=138.1

Q ss_pred             EEEEECCCCCEEEEecC-CCcEEEEeCCcc-ccccccCCccccccCCCCceeecCCCCCCCCcccCCCCCcCcccccccc
Q 021657           13 FALAMCPTEPYVLSGGK-DKSVVLWSIQDH-ITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGH   90 (309)
Q Consensus        13 ~~~~~~~~~~~l~t~~~-dg~i~vwd~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   90 (309)
                      +-++++++|++|+++.. -|.|.++-++.. ........                          .. .++.-.. -+.-
T Consensus        92 ~yvsvd~~g~~vf~AnY~~g~v~v~p~~~dG~l~~~v~~--------------------------~~-h~g~~p~-~rQ~  143 (346)
T COG2706          92 CYVSVDEDGRFVFVANYHSGSVSVYPLQADGSLQPVVQV--------------------------VK-HTGSGPH-ERQE  143 (346)
T ss_pred             eEEEECCCCCEEEEEEccCceEEEEEcccCCccccceee--------------------------ee-cCCCCCC-cccc
Confidence            57889999999888775 578888888642 00000000                          00 0000000 0001


Q ss_pred             cCCeEEEEEecCCCcEEEEEc-CCCeEEEEEcCCCCcceEEE-eeccCCceeEEEeccCCCCeEEEEc-CCCcEEEEecC
Q 021657           91 EDTVEDVTFCPSSAQEFCSVG-DDSCLILWDARVGTSPVIKV-EKAHDADLHCVDWNPLDDNLILTGS-ADNSVRMFDRR  167 (309)
Q Consensus        91 ~~~v~~~~~~~~~~~~l~s~~-~dg~i~iwd~~~~~~~~~~~-~~~~~~~v~~~~~~~~~~~~l~~~~-~dg~i~i~d~~  167 (309)
                      ...+....+.|++ ++|++.. .--.|.+|++..+....... .......-+-|.|+| ++++..+.. .+++|.+|...
T Consensus       144 ~~h~H~a~~tP~~-~~l~v~DLG~Dri~~y~~~dg~L~~~~~~~v~~G~GPRHi~FHp-n~k~aY~v~EL~stV~v~~y~  221 (346)
T COG2706         144 SPHVHSANFTPDG-RYLVVPDLGTDRIFLYDLDDGKLTPADPAEVKPGAGPRHIVFHP-NGKYAYLVNELNSTVDVLEYN  221 (346)
T ss_pred             CCccceeeeCCCC-CEEEEeecCCceEEEEEcccCccccccccccCCCCCcceEEEcC-CCcEEEEEeccCCEEEEEEEc
Confidence            1226778899999 6666654 33469999998766322111 113345678999999 888766555 48999999988


Q ss_pred             CCCCCCCCCceeeecc------CCCCeeEEEEecCCCcEEEEecCCCcEEEEeCCcccccccCCCCCcCCCCceeeeecC
Q 021657          168 NLTSNGVGSPINKFEG------HSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAG  241 (309)
Q Consensus       168 ~~~~~~~~~~~~~~~~------~~~~v~~~~~~~~~~~l~~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~  241 (309)
                      ...  +..+.++.+..      .......|.+++||++|+|+--....|.+|.+...+..+           ..+.....
T Consensus       222 ~~~--g~~~~lQ~i~tlP~dF~g~~~~aaIhis~dGrFLYasNRg~dsI~~f~V~~~~g~L-----------~~~~~~~t  288 (346)
T COG2706         222 PAV--GKFEELQTIDTLPEDFTGTNWAAAIHISPDGRFLYASNRGHDSIAVFSVDPDGGKL-----------ELVGITPT  288 (346)
T ss_pred             CCC--ceEEEeeeeccCccccCCCCceeEEEECCCCCEEEEecCCCCeEEEEEEcCCCCEE-----------EEEEEecc
Confidence            631  00222222221      234567899999999988777667789999998754432           23333444


Q ss_pred             CCcceeeEEEccCCCeEEEEecCCCCCCCCCCeEEEEEccc
Q 021657          242 HRDKVVDFHWNASDPWTVVSVSDDCDSTGGGGTLQIWRMSD  282 (309)
Q Consensus       242 ~~~~v~~~~~~~~~~~~~~s~s~d~~s~~~dg~v~vw~~~~  282 (309)
                      +...-....++|.+.+|+|+.-+.       ..|.+|..+.
T Consensus       289 eg~~PR~F~i~~~g~~Liaa~q~s-------d~i~vf~~d~  322 (346)
T COG2706         289 EGQFPRDFNINPSGRFLIAANQKS-------DNITVFERDK  322 (346)
T ss_pred             CCcCCccceeCCCCCEEEEEccCC-------CcEEEEEEcC
Confidence            555678999999998877654443       6799999984

>KOG4532 consensus WD40-like repeat containing protein [General function prediction only]

Probab=99.35  E-value=6.1e-10  Score=81.39  Aligned_cols=152  Identities=9%  Similarity=0.043  Sum_probs=107.5

Q ss_pred             cEEEEEcCCCeEEEEEcCCCCcceEEEeeccCCceeEEEeccCCCCeEEEEcCCCcEEEEecCCCCCCCCCCceee--ec
Q 021657          105 QEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINK--FE  182 (309)
Q Consensus       105 ~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~--~~  182 (309)
                      ..+..++.|.++++.+++-+........  ..-.+.++++++ ++.++++.+....|..|.+...     ++.+..  ..
T Consensus       129 ~~~~i~sndht~k~~~~~~~s~~~~~h~--~~~~~ns~~~sn-d~~~~~~Vgds~~Vf~y~id~~-----sey~~~~~~a  200 (344)
T KOG4532|consen  129 FPLNIASNDHTGKTMVVSGDSNKFAVHN--QNLTQNSLHYSN-DPSWGSSVGDSRRVFRYAIDDE-----SEYIENIYEA  200 (344)
T ss_pred             cceeeccCCcceeEEEEecCcccceeec--cccceeeeEEcC-CCceEEEecCCCcceEEEeCCc-----cceeeeeEec
Confidence            3466778888888888865542222221  113488999999 9999999999999999999874     233222  23


Q ss_pred             cCCCCeeEEEEecCCCcEEEEecCCCcEEEEeCCcccccccCCCCCcCCCCceeeeecCCCcceeeEEEccCCC--eEEE
Q 021657          183 GHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKVVDFHWNASDP--WTVV  260 (309)
Q Consensus       183 ~~~~~v~~~~~~~~~~~l~~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~--~~~~  260 (309)
                      .....-.+..|+.... .+|++..||++.|||++..+.+...          .-.+...|.+.+..+.|++.|.  .|+.
T Consensus       201 ~t~D~gF~~S~s~~~~-~FAv~~Qdg~~~I~DVR~~~tpm~~----------~sstrp~hnGa~R~c~Fsl~g~lDLLf~  269 (344)
T KOG4532|consen  201 PTSDHGFYNSFSENDL-QFAVVFQDGTCAIYDVRNMATPMAE----------ISSTRPHHNGAFRVCRFSLYGLLDLLFI  269 (344)
T ss_pred             ccCCCceeeeeccCcc-eEEEEecCCcEEEEEecccccchhh----------hcccCCCCCCceEEEEecCCCcceEEEE
Confidence            3344456788998888 5899999999999999986655432          1122345889999999998664  3554


Q ss_pred             EecCCCCCCCCCCeEEEEEcccc
Q 021657          261 SVSDDCDSTGGGGTLQIWRMSDL  283 (309)
Q Consensus       261 s~s~d~~s~~~dg~v~vw~~~~~  283 (309)
                      +-..        +.+.+-|++++
T Consensus       270 sEhf--------s~~hv~D~R~~  284 (344)
T KOG4532|consen  270 SEHF--------SRVHVVDTRNY  284 (344)
T ss_pred             ecCc--------ceEEEEEcccC
Confidence            4444        68999999865

>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB

Probab=99.34  E-value=4.7e-10  Score=93.30  Aligned_cols=165  Identities=13%  Similarity=0.214  Sum_probs=105.0

Q ss_pred             cccccccCCeEEEEEecCCCcEEEEEcCC---CeEEEEEcCCCCcceEEEeeccCCceeEEEeccCCCCeEE-EEcCCC-
Q 021657           85 GIYNGHEDTVEDVTFCPSSAQEFCSVGDD---SCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLIL-TGSADN-  159 (309)
Q Consensus        85 ~~~~~~~~~v~~~~~~~~~~~~l~s~~~d---g~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~-~~~~dg-  159 (309)
                      ..+..+...+....|+|+| +.|+.+..+   ..|++||+.+++.   ..+..+...+.+++|+| +++.|+ +.+.++ 
T Consensus       183 ~~l~~~~~~~~~p~~Spdg-~~la~~~~~~~~~~i~v~d~~~g~~---~~~~~~~~~~~~~~~sp-Dg~~l~~~~~~~~~  257 (417)
T TIGR02800       183 QTITRSREPILSPAWSPDG-QKLAYVSFESGKPEIYVQDLATGQR---EKVASFPGMNGAPAFSP-DGSKLAVSLSKDGN  257 (417)
T ss_pred             EEeecCCCceecccCCCCC-CEEEEEEcCCCCcEEEEEECCCCCE---EEeecCCCCccceEECC-CCCEEEEEECCCCC
Confidence            3344466678889999999 555554432   4799999988762   22334556677899999 887665 445444 


Q ss_pred             -cEEEEecCCCCCCCCCCceeeeccCCCCeeEEEEecCCCcEEEEecCCC--cEEEEeCCcccccccCCCCCcCCCCcee
Q 021657          160 -SVRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAEDG--LLNIWDYEKVGKKVEQGPRTTNYPAGLF  236 (309)
Q Consensus       160 -~i~i~d~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~dg--~i~iwd~~~~~~~~~~~~~~~~~~~~~~  236 (309)
                       .|++||+.+      +. ...+..+........|+|+|++++.+...++  .|+++|+.. ++               .
T Consensus       258 ~~i~~~d~~~------~~-~~~l~~~~~~~~~~~~s~dg~~l~~~s~~~g~~~iy~~d~~~-~~---------------~  314 (417)
T TIGR02800       258 PDIYVMDLDG------KQ-LTRLTNGPGIDTEPSWSPDGKSIAFTSDRGGSPQIYMMDADG-GE---------------V  314 (417)
T ss_pred             ccEEEEECCC------CC-EEECCCCCCCCCCEEECCCCCEEEEEECCCCCceEEEEECCC-CC---------------E
Confidence             588888876      33 3344444444557789999998765555454  466666654 11               1


Q ss_pred             eeecCCCcceeeEEEccCCCeEEEEecCCCCCCCCCCeEEEEEccc
Q 021657          237 FQHAGHRDKVVDFHWNASDPWTVVSVSDDCDSTGGGGTLQIWRMSD  282 (309)
Q Consensus       237 ~~~~~~~~~v~~~~~~~~~~~~~~s~s~d~~s~~~dg~v~vw~~~~  282 (309)
                      ..+..+...+..+.|+|++.+++.+....     ....|.+||+..
T Consensus       315 ~~l~~~~~~~~~~~~spdg~~i~~~~~~~-----~~~~i~~~d~~~  355 (417)
T TIGR02800       315 RRLTFRGGYNASPSWSPDGDLIAFVHREG-----GGFNIAVMDLDG  355 (417)
T ss_pred             EEeecCCCCccCeEECCCCCEEEEEEccC-----CceEEEEEeCCC
Confidence            12223345567889999998777654321     123788888763

The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.

>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]

Probab=99.34  E-value=5.6e-10  Score=89.46  Aligned_cols=155  Identities=15%  Similarity=0.360  Sum_probs=105.5

Q ss_pred             EEEEEecCCCcEEEEEcC-----------CCeEEEEEcCCCCcceEEEeeccCCceeEEEeccCCCCeEEE--EcCCCcE
Q 021657           95 EDVTFCPSSAQEFCSVGD-----------DSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILT--GSADNSV  161 (309)
Q Consensus        95 ~~~~~~~~~~~~l~s~~~-----------dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~--~~~dg~i  161 (309)
                      ..+.|++-|..+|+.++.           ..++++.++. +.  .........++|.++.|+| ++..|++  |..-..+
T Consensus       221 vqm~WN~~gt~LLvLastdVDktn~SYYGEq~Lyll~t~-g~--s~~V~L~k~GPVhdv~W~~-s~~EF~VvyGfMPAkv  296 (566)
T KOG2315|consen  221 VQMKWNKLGTALLVLASTDVDKTNASYYGEQTLYLLATQ-GE--SVSVPLLKEGPVHDVTWSP-SGREFAVVYGFMPAKV  296 (566)
T ss_pred             eEEEeccCCceEEEEEEEeecCCCccccccceEEEEEec-Cc--eEEEecCCCCCceEEEECC-CCCEEEEEEecccceE
Confidence            357788776555554443           2467788876 33  2223234478999999999 8876655  4556889


Q ss_pred             EEEecCCCCCCCCCCceeeeccCCCCeeEEEEecCCCcEEEEecCC--CcEEEEeCCcccccccCCCCCcCCCCceeeee
Q 021657          162 RMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAED--GLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQH  239 (309)
Q Consensus       162 ~i~d~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~d--g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~  239 (309)
                      .|||++       +.++..+.  .++=+++-|+|.|+.++.+|-.+  |.|.|||+.+.               .++..+
T Consensus       297 tifnlr-------~~~v~df~--egpRN~~~fnp~g~ii~lAGFGNL~G~mEvwDv~n~---------------K~i~~~  352 (566)
T KOG2315|consen  297 TIFNLR-------GKPVFDFP--EGPRNTAFFNPHGNIILLAGFGNLPGDMEVWDVPNR---------------KLIAKF  352 (566)
T ss_pred             EEEcCC-------CCEeEeCC--CCCccceEECCCCCEEEEeecCCCCCceEEEeccch---------------hhcccc
Confidence            999998       67777775  56778999999999776555443  88999999982               233333


Q ss_pred             cCCCcceeeEEEccCCCeEEEEecCCCCCCCCCCeEEEEEcc
Q 021657          240 AGHRDKVVDFHWNASDPWTVVSVSDDCDSTGGGGTLQIWRMS  281 (309)
Q Consensus       240 ~~~~~~v~~~~~~~~~~~~~~s~s~d~~s~~~dg~v~vw~~~  281 (309)
                      ...  ..+-+.|+|+|.+++.+...-  ==-.|+.++||++.
T Consensus       353 ~a~--~tt~~eW~PdGe~flTATTaP--RlrvdNg~Kiwhyt  390 (566)
T KOG2315|consen  353 KAA--NTTVFEWSPDGEYFLTATTAP--RLRVDNGIKIWHYT  390 (566)
T ss_pred             ccC--CceEEEEcCCCcEEEEEeccc--cEEecCCeEEEEec
Confidence            332  346689999999877532110  00246999999997

>KOG4714 consensus Nucleoporin [Nuclear structure]

Probab=99.32  E-value=2.2e-11  Score=88.35  Aligned_cols=217  Identities=14%  Similarity=0.233  Sum_probs=126.2

Q ss_pred             CCCCCcceEEEEECCCCCEEEEecCCCcEEEEeCCccccccccCCccccccCCCCceeecCCCCCCCCcccCCCCCcCcc
Q 021657            5 TGHQDNAEFALAMCPTEPYVLSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPR   84 (309)
Q Consensus         5 ~~H~~~~V~~~~~~~~~~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   84 (309)
                      .+|.+-.|+.+.++.+ -.|+++..++.+.........+......                            .....+.
T Consensus        32 ~~~~d~~~~~~~~v~~-~~lf~~e~~~~~ss~g~~r~~~~~~~~r----------------------------t~~i~~~   82 (319)
T KOG4714|consen   32 MQHADVKLSKVSLSAE-YILFTGETSSQIISLGKGRGRCISLWER----------------------------DDGIDPF   82 (319)
T ss_pred             ccccceEEEEeechhh-heeecccchhheeeeccceEEEechhhc----------------------------ccCcCce
Confidence            3455544566666543 3567777777776666544322111110                            0011223


Q ss_pred             cccccccCCeEEEEEecCCCcEEEEEcCCCeEEEEEcCCCCcceEEEee-ccCCceeEEEeccCCCCeEEEEcC-----C
Q 021657           85 GIYNGHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPVIKVEK-AHDADLHCVDWNPLDDNLILTGSA-----D  158 (309)
Q Consensus        85 ~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~~l~~~~~-----d  158 (309)
                      ..+..|+++-.+-..+-.+ +.+++++.||.+.+.+.+.... ...... .|.+ --+.++.. .++.+.++..     -
T Consensus        83 ~~~a~~sep~p~~~~s~~~-t~V~~~~~dg~~~v~s~~~~~~-~~~~i~~~~~~-~as~~~~~-~~~~i~s~~~g~~n~~  158 (319)
T KOG4714|consen   83 KVLAKNSEIDPNDACTMTD-NRVCIGYADGSLAVFSTDKDLA-LMSRIPSIHSG-SASRKICR-HGNSILSGGCGNWNAQ  158 (319)
T ss_pred             eeeeccCCCCCcccccccC-CceEecCCCceEEEEechHHHh-hhhhccccccc-ccccceee-cccEEecCCcceEeec
Confidence            3333444332222223233 5699999999999999865221 111111 1111 11222222 3444444321     1


Q ss_pred             CcEEEEecCCCCCCCCCCceeeeccCCCCeeEEEEecCCCcEEEEecCCCcEEEEeCCcccccccCCCCCcCCCCceeee
Q 021657          159 NSVRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQ  238 (309)
Q Consensus       159 g~i~i~d~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~  238 (309)
                      +..+.|+++..     ...+...+. ...|.+++-+|...+++++|++||.+-+||.++...              +...
T Consensus       159 d~~~a~~~~p~-----~t~~~~~~~-~~~v~~l~~hp~qq~~v~cgt~dg~~~l~d~rn~~~--------------p~S~  218 (319)
T KOG4714|consen  159 DNFYANTLDPI-----KTLIPSKKA-LDAVTALCSHPAQQHLVCCGTDDGIVGLWDARNVAM--------------PVSL  218 (319)
T ss_pred             cceeeeccccc-----ccccccccc-cccchhhhCCcccccEEEEecCCCeEEEEEcccccc--------------hHHH
Confidence            34556666542     111111222 234999999999999999999999999999998322              3445


Q ss_pred             ecCCCcceeeEEEccCCCeEEEEecCCCCCCCCCCeEEEEEcc
Q 021657          239 HAGHRDKVVDFHWNASDPWTVVSVSDDCDSTGGGGTLQIWRMS  281 (309)
Q Consensus       239 ~~~~~~~v~~~~~~~~~~~~~~s~s~d~~s~~~dg~v~vw~~~  281 (309)
                      +..|..+++.+.|+|.++.-+.++|+|       |.+..||.+
T Consensus       219 l~ahk~~i~eV~FHpk~p~~Lft~sed-------Gslw~wdas  254 (319)
T KOG4714|consen  219 LKAHKAEIWEVHFHPKNPEHLFTCSED-------GSLWHWDAS  254 (319)
T ss_pred             HHHhhhhhhheeccCCCchheeEecCC-------CcEEEEcCC
Confidence            688999999999999988777766666       999999987

>PRK01029 tolB translocation protein TolB; Provisional

Probab=99.30  E-value=6.7e-10  Score=91.71  Aligned_cols=185  Identities=11%  Similarity=0.018  Sum_probs=106.0

Q ss_pred             CcccCCCCCcCcccccccccCCeEEEEEecCCCc--EEEEEcCCC--eEEEEEcCCCCcceEEEeeccCCceeEEEeccC
Q 021657           72 NDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQ--EFCSVGDDS--CLILWDARVGTSPVIKVEKAHDADLHCVDWNPL  147 (309)
Q Consensus        72 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~--~l~s~~~dg--~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~  147 (309)
                      .+.+.+.....+. .+......+.+-.|+|+|..  ++++...+|  .|.+.++..++...+.   .........+|+| 
T Consensus       166 ~l~~~d~dG~~~~-~lt~~~~~~~sP~wSPDG~~~~~~y~S~~~g~~~I~~~~l~~g~~~~lt---~~~g~~~~p~wSP-  240 (428)
T PRK01029        166 ELWSVDYDGQNLR-PLTQEHSLSITPTWMHIGSGFPYLYVSYKLGVPKIFLGSLENPAGKKIL---ALQGNQLMPTFSP-  240 (428)
T ss_pred             eEEEEcCCCCCce-EcccCCCCcccceEccCCCceEEEEEEccCCCceEEEEECCCCCceEee---cCCCCccceEECC-
Confidence            4445554444333 33334556677899999854  333555444  5777788877633333   2344456789999 


Q ss_pred             CCCeEEEEcC-CC----cEEEEecCCCCCCCCCCceeeeccCCCCeeEEEEecCCCcEEEEecCCCcEEEEeCCcccccc
Q 021657          148 DDNLILTGSA-DN----SVRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKV  222 (309)
Q Consensus       148 ~~~~l~~~~~-dg----~i~i~d~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~dg~i~iwd~~~~~~~~  222 (309)
                      +|+.|+..+. +|    .+.+|++.....   +................+|+|||++|+.+...+|...+|.+.....  
T Consensus       241 DG~~Laf~s~~~g~~di~~~~~~~~~g~~---g~~~~lt~~~~~~~~~p~wSPDG~~Laf~s~~~g~~~ly~~~~~~~--  315 (428)
T PRK01029        241 RKKLLAFISDRYGNPDLFIQSFSLETGAI---GKPRRLLNEAFGTQGNPSFSPDGTRLVFVSNKDGRPRIYIMQIDPE--  315 (428)
T ss_pred             CCCEEEEEECCCCCcceeEEEeecccCCC---CcceEeecCCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECccc--
Confidence            8887776542 23    334466654110   2222222222234467899999998765665677666665432110  


Q ss_pred             cCCCCCcCCCCceeeeecCCCcceeeEEEccCCCeEEEEecCCCCCCCCCCeEEEEEcc
Q 021657          223 EQGPRTTNYPAGLFFQHAGHRDKVVDFHWNASDPWTVVSVSDDCDSTGGGGTLQIWRMS  281 (309)
Q Consensus       223 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~s~d~~s~~~dg~v~vw~~~  281 (309)
                                ......+..+...+....|+|++.+++.+...+     ....|.+||+.
T Consensus       316 ----------g~~~~~lt~~~~~~~~p~wSPDG~~Laf~~~~~-----g~~~I~v~dl~  359 (428)
T PRK01029        316 ----------GQSPRLLTKKYRNSSCPAWSPDGKKIAFCSVIK-----GVRQICVYDLA  359 (428)
T ss_pred             ----------ccceEEeccCCCCccceeECCCCCEEEEEEcCC-----CCcEEEEEECC
Confidence                      001112233344667889999999877655432     13579999987

>PRK00178 tolB translocation protein TolB; Provisional

Probab=99.29  E-value=8.9e-10  Score=91.83  Aligned_cols=177  Identities=12%  Similarity=0.140  Sum_probs=108.8

Q ss_pred             cccCCCCCcCcccccccccCCeEEEEEecCCCcEEEEEcCC--CeEEEEEcCCCCcceEEEeeccCCceeEEEeccCCCC
Q 021657           73 DKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQEFCSVGDD--SCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDN  150 (309)
Q Consensus        73 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d--g~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~  150 (309)
                      +.+++..... .+.+..+...+....|+|+|+.++++...+  ..|.+||+.+++.   ..+......+....|+| +++
T Consensus       181 l~~~d~~g~~-~~~l~~~~~~~~~p~wSpDG~~la~~s~~~~~~~l~~~~l~~g~~---~~l~~~~g~~~~~~~Sp-DG~  255 (430)
T PRK00178        181 LQRSDYDGAR-AVTLLQSREPILSPRWSPDGKRIAYVSFEQKRPRIFVQNLDTGRR---EQITNFEGLNGAPAWSP-DGS  255 (430)
T ss_pred             EEEECCCCCC-ceEEecCCCceeeeeECCCCCEEEEEEcCCCCCEEEEEECCCCCE---EEccCCCCCcCCeEECC-CCC
Confidence            4455554433 344556677889999999994444444333  4689999988762   22233344556789999 888


Q ss_pred             eEE-EEcCCC--cEEEEecCCCCCCCCCCceeeeccCCCCeeEEEEecCCCcEEEEecCCCc--EEEEeCCcccccccCC
Q 021657          151 LIL-TGSADN--SVRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAEDGL--LNIWDYEKVGKKVEQG  225 (309)
Q Consensus       151 ~l~-~~~~dg--~i~i~d~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~dg~--i~iwd~~~~~~~~~~~  225 (309)
                      .|+ +...+|  .|++||+.+      +. ...+..+........|+|||+.++.+...+|.  |+++|+.. ++..   
T Consensus       256 ~la~~~~~~g~~~Iy~~d~~~------~~-~~~lt~~~~~~~~~~~spDg~~i~f~s~~~g~~~iy~~d~~~-g~~~---  324 (430)
T PRK00178        256 KLAFVLSKDGNPEIYVMDLAS------RQ-LSRVTNHPAIDTEPFWGKDGRTLYFTSDRGGKPQIYKVNVNG-GRAE---  324 (430)
T ss_pred             EEEEEEccCCCceEEEEECCC------CC-eEEcccCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECCC-CCEE---
Confidence            776 444555  588889886      43 33444445556678999999987666655554  55566554 1110   


Q ss_pred             CCCcCCCCceeeeecCCCcceeeEEEccCCCeEEEEecCCCCCCCCCCeEEEEEccc
Q 021657          226 PRTTNYPAGLFFQHAGHRDKVVDFHWNASDPWTVVSVSDDCDSTGGGGTLQIWRMSD  282 (309)
Q Consensus       226 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~s~d~~s~~~dg~v~vw~~~~  282 (309)
                               .+ ...+  .......|+|++.+++.+...+     ....|.+||+..
T Consensus       325 ---------~l-t~~~--~~~~~~~~Spdg~~i~~~~~~~-----~~~~l~~~dl~t  364 (430)
T PRK00178        325 ---------RV-TFVG--NYNARPRLSADGKTLVMVHRQD-----GNFHVAAQDLQR  364 (430)
T ss_pred             ---------Ee-ecCC--CCccceEECCCCCEEEEEEccC-----CceEEEEEECCC
Confidence                     11 1111  2234578999999877655432     123588888873

>KOG4190 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.29  E-value=9.4e-12  Score=99.74  Aligned_cols=173  Identities=23%  Similarity=0.347  Sum_probs=120.0

Q ss_pred             CcccCCCCCcceEEEEECCCCCEEEEecCCCcEEEEeCCccccccccCCccccccCCCCceeecCCCCCCCCcccCCCCC
Q 021657            1 MEILTGHQDNAEFALAMCPTEPYVLSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPS   80 (309)
Q Consensus         1 l~~l~~H~~~~V~~~~~~~~~~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (309)
                      ++.+.||+. .|..++--.+.+-+++++.|++|++|.++..-..                                 ..+
T Consensus       728 L~nf~GH~~-~iRai~AidNENSFiSASkDKTVKLWSik~EgD~---------------------------------~~t  773 (1034)
T KOG4190|consen  728 LCNFTGHQE-KIRAIAAIDNENSFISASKDKTVKLWSIKPEGDE---------------------------------IGT  773 (1034)
T ss_pred             eecccCcHH-HhHHHHhcccccceeeccCCceEEEEEeccccCc---------------------------------ccc
Confidence            356789998 7888877667788999999999999999742110                                 112


Q ss_pred             cCcccccccccCCeEEEEEecCCCcEEEEEcCCCeEEEEEcCCCCcceEEEeeccCCceeEEEeccC-CCCeEEEE-cCC
Q 021657           81 VGPRGIYNGHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPL-DDNLILTG-SAD  158 (309)
Q Consensus        81 ~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~-~~~~l~~~-~~d  158 (309)
                      ..+..++..|+.+|.++.|..+. +.+++  -||-|.+||.--++...........+.+..+..-|. +...+++| +..
T Consensus       774 saCQfTY~aHkk~i~~igfL~~l-r~i~S--cD~giHlWDPFigr~Laq~~dapk~~a~~~ikcl~nv~~~iliAgcsae  850 (1034)
T KOG4190|consen  774 SACQFTYQAHKKPIHDIGFLADL-RSIAS--CDGGIHLWDPFIGRLLAQMEDAPKEGAGGNIKCLENVDRHILIAGCSAE  850 (1034)
T ss_pred             ceeeeEhhhccCcccceeeeecc-ceeee--ccCcceeecccccchhHhhhcCcccCCCceeEecccCcchheeeeccch
Confidence            22445678899999999999876 55655  478899999765552111111111222333333331 33444444 778


Q ss_pred             CcEEEEecCCCCCCCCCCceeeec-----cCCCCeeEEEEecCCCcEEEEecCCCcEEEEeCCc
Q 021657          159 NSVRMFDRRNLTSNGVGSPINKFE-----GHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEK  217 (309)
Q Consensus       159 g~i~i~d~~~~~~~~~~~~~~~~~-----~~~~~v~~~~~~~~~~~l~~~~~~dg~i~iwd~~~  217 (309)
                      .+++++|.|.      ..-...++     +.+..+.+++..+.|++ +|++-.+|.|.+.|.++
T Consensus       851 STVKl~DaRs------ce~~~E~kVcna~~Pna~~R~iaVa~~GN~-lAa~LSnGci~~LDaR~  907 (1034)
T KOG4190|consen  851 STVKLFDARS------CEWTCELKVCNAPGPNALTRAIAVADKGNK-LAAALSNGCIAILDARN  907 (1034)
T ss_pred             hhheeeeccc------ccceeeEEeccCCCCchheeEEEeccCcch-hhHHhcCCcEEEEecCC
Confidence            9999999998      55555543     34456899999999998 57888899999999998

>KOG3914 consensus WD repeat protein WDR4 [Function unknown]

Probab=99.27  E-value=7.3e-11  Score=90.69  Aligned_cols=160  Identities=14%  Similarity=0.164  Sum_probs=109.6

Q ss_pred             eEEEEECCCCCEEEEecCCCcEEEEeCCcccccccc--------CCccccccCCCCceeecCCCCCCCCcccCCCCCcCc
Q 021657           12 EFALAMCPTEPYVLSGGKDKSVVLWSIQDHITSSAT--------DPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGP   83 (309)
Q Consensus        12 V~~~~~~~~~~~l~t~~~dg~i~vwd~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   83 (309)
                      +..+..++.+++||.+..+....++++.........        .+.......................+.++.... ..
T Consensus        65 ~~~~~~s~~~~llAv~~~~K~~~~f~~~~~~~~~kl~~~~~v~~~~~ai~~~~~~~sv~v~dkagD~~~~di~s~~~-~~  143 (390)
T KOG3914|consen   65 PALVLTSDSGRLVAVATSSKQRAVFDYRENPKGAKLLDVSCVPKRPTAISFIREDTSVLVADKAGDVYSFDILSADS-GR  143 (390)
T ss_pred             ccccccCCCceEEEEEeCCCceEEEEEecCCCcceeeeEeecccCcceeeeeeccceEEEEeecCCceeeeeecccc-cC
Confidence            445667888999999988888878887654321110        000111111122222222233334455555554 44


Q ss_pred             ccccccccCCeEEEEEecCCCcEEEEEcCCCeEEEEEcCCCCcceEEEeeccCCceeEEEeccCCCCeEEEEcCCCcEEE
Q 021657           84 RGIYNGHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRM  163 (309)
Q Consensus        84 ~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i  163 (309)
                      ...+.+|-..+++++|+||+ ++++++..|..|++-.....- .......+|..-|..++.-+  +..|++|+.|+++++
T Consensus       144 ~~~~lGhvSml~dVavS~D~-~~IitaDRDEkIRvs~ypa~f-~IesfclGH~eFVS~isl~~--~~~LlS~sGD~tlr~  219 (390)
T KOG3914|consen  144 CEPILGHVSMLLDVAVSPDD-QFIITADRDEKIRVSRYPATF-VIESFCLGHKEFVSTISLTD--NYLLLSGSGDKTLRL  219 (390)
T ss_pred             cchhhhhhhhhheeeecCCC-CEEEEecCCceEEEEecCccc-chhhhccccHhheeeeeecc--CceeeecCCCCcEEE
Confidence            45667899999999999998 899999999999998765433 23344568999999999986  566999999999999


Q ss_pred             EecCCCCCCCCCCceeeec
Q 021657          164 FDRRNLTSNGVGSPINKFE  182 (309)
Q Consensus       164 ~d~~~~~~~~~~~~~~~~~  182 (309)
                      ||+++      ++.+.++.
T Consensus       220 Wd~~s------gk~L~t~d  232 (390)
T KOG3914|consen  220 WDITS------GKLLDTCD  232 (390)
T ss_pred             Eeccc------CCcccccc
Confidence            99999      77776665

>KOG2695 consensus WD40 repeat protein [General function prediction only]

Probab=99.27  E-value=1.6e-11  Score=92.52  Aligned_cols=155  Identities=20%  Similarity=0.321  Sum_probs=111.3

Q ss_pred             EEEcCCCeEEEEEcCCCCcceEEEeeccCCceeEEEeccCCCCeEEEEcCCCcEEEEecCCCCCCCCCCceeeeccCCCC
Q 021657          108 CSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGHSAA  187 (309)
Q Consensus       108 ~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~  187 (309)
                      ++.+.+-.|-+-|++++-   ...+. ..+.|.+++|.. .+++++.|..+|.|..+|+|...+.. +.+.+.+. |...
T Consensus       228 fs~G~sqqv~L~nvetg~---~qsf~-sksDVfAlQf~~-s~nLv~~GcRngeI~~iDLR~rnqG~-~~~a~rly-h~Ss  300 (425)
T KOG2695|consen  228 FSVGLSQQVLLTNVETGH---QQSFQ-SKSDVFALQFAG-SDNLVFNGCRNGEIFVIDLRCRNQGN-GWCAQRLY-HDSS  300 (425)
T ss_pred             ecccccceeEEEEeeccc---ccccc-cchhHHHHHhcc-cCCeeEecccCCcEEEEEeeecccCC-CcceEEEE-cCcc
Confidence            445566778888998877   33443 577899999998 89999999999999999999853322 45555565 7889


Q ss_pred             eeEEEEec-CCCcEEEEecCCCcEEEEeCCcccccccCCCCCcCCCCceeeeecCCCcceee--EEEccCCCeEEEEecC
Q 021657          188 VLCVQWSP-DKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKVVD--FHWNASDPWTVVSVSD  264 (309)
Q Consensus       188 v~~~~~~~-~~~~l~~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~--~~~~~~~~~~~~s~s~  264 (309)
                      |+++..-. ++++| ++.+.+|.|++||++..+..            ..+..+.||-..-.-  +...+.... ++++++
T Consensus       301 vtslq~Lq~s~q~L-maS~M~gkikLyD~R~~K~~------------~~V~qYeGHvN~~a~l~~~v~~eeg~-I~s~Gd  366 (425)
T KOG2695|consen  301 VTSLQILQFSQQKL-MASDMTGKIKLYDLRATKCK------------KSVMQYEGHVNLSAYLPAHVKEEEGS-IFSVGD  366 (425)
T ss_pred             hhhhhhhccccceE-eeccCcCceeEeeehhhhcc------------cceeeeecccccccccccccccccce-EEEccC
Confidence            99998877 67765 47788999999999983332            236677787654333  334455554 444555


Q ss_pred             CCCCCCCCCeEEEEEccccccCChhhHhHhhh
Q 021657          265 DCDSTGGGGTLQIWRMSDLIYRPQDEVLAELE  296 (309)
Q Consensus       265 d~~s~~~dg~v~vw~~~~~~~~~~~~~~~~~~  296 (309)
                      |       -..+||.+.      .+.++.+++
T Consensus       367 D-------cytRiWsl~------~ghLl~tip  385 (425)
T KOG2695|consen  367 D-------CYTRIWSLD------SGHLLCTIP  385 (425)
T ss_pred             e-------eEEEEEecc------cCceeeccC
Confidence            4       799999999      566555554

>PRK04792 tolB translocation protein TolB; Provisional

Probab=99.27  E-value=2.3e-09  Score=89.25  Aligned_cols=163  Identities=12%  Similarity=0.139  Sum_probs=98.1

Q ss_pred             cccccCCeEEEEEecCCCcEEEEEcCCC--eEEEEEcCCCCcceEEEeeccCCceeEEEeccCCCCeEEE-EcCCCc--E
Q 021657           87 YNGHEDTVEDVTFCPSSAQEFCSVGDDS--CLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILT-GSADNS--V  161 (309)
Q Consensus        87 ~~~~~~~v~~~~~~~~~~~~l~s~~~dg--~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~-~~~dg~--i  161 (309)
                      +..+...+.+..|+|+|..++++...++  .|.+||+.+++...   +..........+|+| +++.|+. ...+|.  |
T Consensus       213 l~~~~~~~~~p~wSPDG~~La~~s~~~g~~~L~~~dl~tg~~~~---lt~~~g~~~~~~wSP-DG~~La~~~~~~g~~~I  288 (448)
T PRK04792        213 LLRSPEPLMSPAWSPDGRKLAYVSFENRKAEIFVQDIYTQVREK---VTSFPGINGAPRFSP-DGKKLALVLSKDGQPEI  288 (448)
T ss_pred             eecCCCcccCceECCCCCEEEEEEecCCCcEEEEEECCCCCeEE---ecCCCCCcCCeeECC-CCCEEEEEEeCCCCeEE
Confidence            3345667889999999944444443333  58888988776322   222233445789999 8886654 556665  7


Q ss_pred             EEEecCCCCCCCCCCceeeeccCCCCeeEEEEecCCCcEEEEecCCCcEEE--EeCCcccccccCCCCCcCCCCceeeee
Q 021657          162 RMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNI--WDYEKVGKKVEQGPRTTNYPAGLFFQH  239 (309)
Q Consensus       162 ~i~d~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~dg~i~i--wd~~~~~~~~~~~~~~~~~~~~~~~~~  239 (309)
                      +++|+.+      ++ ...+..+.......+|+|||++++.+...++...+  +|+.. ++.            ..+ ..
T Consensus       289 y~~dl~t------g~-~~~lt~~~~~~~~p~wSpDG~~I~f~s~~~g~~~Iy~~dl~~-g~~------------~~L-t~  347 (448)
T PRK04792        289 YVVDIAT------KA-LTRITRHRAIDTEPSWHPDGKSLIFTSERGGKPQIYRVNLAS-GKV------------SRL-TF  347 (448)
T ss_pred             EEEECCC------CC-eEECccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCC-CCE------------EEE-ec
Confidence            7778876      43 34444445556778999999987766655555444  45543 111            111 11


Q ss_pred             cCCCcceeeEEEccCCCeEEEEecCCCCCCCCCCeEEEEEcc
Q 021657          240 AGHRDKVVDFHWNASDPWTVVSVSDDCDSTGGGGTLQIWRMS  281 (309)
Q Consensus       240 ~~~~~~v~~~~~~~~~~~~~~s~s~d~~s~~~dg~v~vw~~~  281 (309)
                      .+  ......+|+|++.+++.+...+     ....|.++|+.
T Consensus       348 ~g--~~~~~~~~SpDG~~l~~~~~~~-----g~~~I~~~dl~  382 (448)
T PRK04792        348 EG--EQNLGGSITPDGRSMIMVNRTN-----GKFNIARQDLE  382 (448)
T ss_pred             CC--CCCcCeeECCCCCEEEEEEecC-----CceEEEEEECC
Confidence            22  2234578999999877754432     11245556655

>PRK04043 tolB translocation protein TolB; Provisional

Probab=99.24  E-value=8.9e-09  Score=84.61  Aligned_cols=157  Identities=13%  Similarity=0.009  Sum_probs=91.5

Q ss_pred             ccCCeEEEEEecCCCcEEEEEcCC--CeEEEEEcCCCCcceEEEeeccCCceeEEEeccCCCCeEEEEc-CCC--cEEEE
Q 021657           90 HEDTVEDVTFCPSSAQEFCSVGDD--SCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGS-ADN--SVRMF  164 (309)
Q Consensus        90 ~~~~v~~~~~~~~~~~~l~s~~~d--g~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~-~dg--~i~i~  164 (309)
                      ..+......|+|+|..++++.+.+  ..|.++|+..++   ...+..+........|+| +++.++..+ ..+  .|.++
T Consensus       231 ~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~dl~~g~---~~~LT~~~~~d~~p~~SP-DG~~I~F~Sdr~g~~~Iy~~  306 (419)
T PRK04043        231 SQGMLVVSDVSKDGSKLLLTMAPKGQPDIYLYDTNTKT---LTQITNYPGIDVNGNFVE-DDKRIVFVSDRLGYPNIFMK  306 (419)
T ss_pred             CCCcEEeeEECCCCCEEEEEEccCCCcEEEEEECCCCc---EEEcccCCCccCccEECC-CCCEEEEEECCCCCceEEEE
Confidence            344456678999996666666544  467777887665   223333333344568999 887666554 333  57777


Q ss_pred             ecCCCCCCCCCCceeeeccCCCCeeEEEEecCCCcEEEEecCC--------CcEEEEeCCcccccccCCCCCcCCCCcee
Q 021657          165 DRRNLTSNGVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAED--------GLLNIWDYEKVGKKVEQGPRTTNYPAGLF  236 (309)
Q Consensus       165 d~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~d--------g~i~iwd~~~~~~~~~~~~~~~~~~~~~~  236 (309)
                      |+..      ++..+... ....  ...|+|||++++.+...+        ..|.+.|+... ..               
T Consensus       307 dl~~------g~~~rlt~-~g~~--~~~~SPDG~~Ia~~~~~~~~~~~~~~~~I~v~d~~~g-~~---------------  361 (419)
T PRK04043        307 KLNS------GSVEQVVF-HGKN--NSSVSTYKNYIVYSSRETNNEFGKNTFNLYLISTNSD-YI---------------  361 (419)
T ss_pred             ECCC------CCeEeCcc-CCCc--CceECCCCCEEEEEEcCCCcccCCCCcEEEEEECCCC-Ce---------------
Confidence            8776      44322221 1111  248999999876666543        35777777651 11               


Q ss_pred             eeecCCCcceeeEEEccCCCeEEEEecCCCCCCCCCCeEEEEEcc
Q 021657          237 FQHAGHRDKVVDFHWNASDPWTVVSVSDDCDSTGGGGTLQIWRMS  281 (309)
Q Consensus       237 ~~~~~~~~~v~~~~~~~~~~~~~~s~s~d~~s~~~dg~v~vw~~~  281 (309)
                      ..+... .......|+|++..++.+...     +....+.+.++.
T Consensus       362 ~~LT~~-~~~~~p~~SPDG~~I~f~~~~-----~~~~~L~~~~l~  400 (419)
T PRK04043        362 RRLTAN-GVNQFPRFSSDGGSIMFIKYL-----GNQSALGIIRLN  400 (419)
T ss_pred             EECCCC-CCcCCeEECCCCCEEEEEEcc-----CCcEEEEEEecC
Confidence            111111 122358899999987766432     223456667766

>KOG4714 consensus Nucleoporin [Nuclear structure]

Probab=99.23  E-value=2.4e-10  Score=83.02  Aligned_cols=97  Identities=21%  Similarity=0.331  Sum_probs=72.8

Q ss_pred             CeEEEEEcCCCCcceEEEeeccCCceeEEEeccCCCCeEEEEcCCCcEEEEecCCCCCCCCCCceeeeccCCCCeeEEEE
Q 021657          114 SCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQW  193 (309)
Q Consensus       114 g~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~v~~~~~  193 (309)
                      +..++|+++..+.  ..........|++++-+|...+.+++|+.||.+-+||.|+.     ..+...+..|+.++..+-|
T Consensus       159 d~~~a~~~~p~~t--~~~~~~~~~~v~~l~~hp~qq~~v~cgt~dg~~~l~d~rn~-----~~p~S~l~ahk~~i~eV~F  231 (319)
T KOG4714|consen  159 DNFYANTLDPIKT--LIPSKKALDAVTALCSHPAQQHLVCCGTDDGIVGLWDARNV-----AMPVSLLKAHKAEIWEVHF  231 (319)
T ss_pred             cceeeeccccccc--ccccccccccchhhhCCcccccEEEEecCCCeEEEEEcccc-----cchHHHHHHhhhhhhheec
Confidence            3456677654442  11112223349999999966778889999999999999984     4567778899999999999


Q ss_pred             ecCCCcEEEEecCCCcEEEEeCCc
Q 021657          194 SPDKSSVFGSSAEDGLLNIWDYEK  217 (309)
Q Consensus       194 ~~~~~~l~~~~~~dg~i~iwd~~~  217 (309)
                      +|...--|.++++||.+..||...
T Consensus       232 Hpk~p~~Lft~sedGslw~wdas~  255 (319)
T KOG4714|consen  232 HPKNPEHLFTCSEDGSLWHWDAST  255 (319)
T ss_pred             cCCCchheeEecCCCcEEEEcCCC
Confidence            996543345999999999999874

>KOG3914 consensus WD repeat protein WDR4 [Function unknown]

Probab=99.20  E-value=6.5e-10  Score=85.59  Aligned_cols=158  Identities=17%  Similarity=0.202  Sum_probs=100.5

Q ss_pred             eEEEEEecCCCcEEEEEcCCCeEEEEEcCCCCc--ceEEEeeccCCceeEEEeccCCCCeEEEEcCCCcEEEEecCCCCC
Q 021657           94 VEDVTFCPSSAQEFCSVGDDSCLILWDARVGTS--PVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTS  171 (309)
Q Consensus        94 v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~--~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~  171 (309)
                      ...+..++.+ .++|.+..+....++++.....  ...... .-...-+++.+.. +......+..-|.++-+|+-... 
T Consensus        65 ~~~~~~s~~~-~llAv~~~~K~~~~f~~~~~~~~~kl~~~~-~v~~~~~ai~~~~-~~~sv~v~dkagD~~~~di~s~~-  140 (390)
T KOG3914|consen   65 PALVLTSDSG-RLVAVATSSKQRAVFDYRENPKGAKLLDVS-CVPKRPTAISFIR-EDTSVLVADKAGDVYSFDILSAD-  140 (390)
T ss_pred             ccccccCCCc-eEEEEEeCCCceEEEEEecCCCcceeeeEe-ecccCcceeeeee-ccceEEEEeecCCceeeeeeccc-
Confidence            3445556666 7888888887777777765442  111111 1122334445544 44444444444555544444321 


Q ss_pred             CCCCCceeeeccCCCCeeEEEEecCCCcEEEEecCCCcEEEEeCCcccccccCCCCCcCCCCceeeeecCCCcceeeEEE
Q 021657          172 NGVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKVVDFHW  251 (309)
Q Consensus       172 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~  251 (309)
                         ..+...+-+|-.-++.++|+||++++ .++..|..|++-........              -.-.-||..-|..++.
T Consensus       141 ---~~~~~~~lGhvSml~dVavS~D~~~I-itaDRDEkIRvs~ypa~f~I--------------esfclGH~eFVS~isl  202 (390)
T KOG3914|consen  141 ---SGRCEPILGHVSMLLDVAVSPDDQFI-ITADRDEKIRVSRYPATFVI--------------ESFCLGHKEFVSTISL  202 (390)
T ss_pred             ---ccCcchhhhhhhhhheeeecCCCCEE-EEecCCceEEEEecCcccch--------------hhhccccHhheeeeee
Confidence               12344556788999999999999975 59999999999877651111              1123579999999999


Q ss_pred             ccCCCeEEEEecCCCCCCCCCCeEEEEEccc
Q 021657          252 NASDPWTVVSVSDDCDSTGGGGTLQIWRMSD  282 (309)
Q Consensus       252 ~~~~~~~~~s~s~d~~s~~~dg~v~vw~~~~  282 (309)
                      -++.. |+        |||.|++|++||+..
T Consensus       203 ~~~~~-Ll--------S~sGD~tlr~Wd~~s  224 (390)
T KOG3914|consen  203 TDNYL-LL--------SGSGDKTLRLWDITS  224 (390)
T ss_pred             ccCce-ee--------ecCCCCcEEEEeccc
Confidence            88543 45        777779999999993

>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]

Probab=99.20  E-value=1.4e-08  Score=81.82  Aligned_cols=143  Identities=17%  Similarity=0.254  Sum_probs=92.8

Q ss_pred             eEEEEEcCCCCcceEEEeeccCCceeEEEeccCCCCeEEEEcC---CCcEEEEecCCCCCCCCCCceeeeccCCCCeeEE
Q 021657          115 CLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSA---DNSVRMFDRRNLTSNGVGSPINKFEGHSAAVLCV  191 (309)
Q Consensus       115 ~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~---dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~v~~~  191 (309)
                      .+-|+.++....+.  ....-...|...+|-| .|+.+++-+.   ..++.+|-+.+..  ...+.+..+.  +...+.+
T Consensus       426 n~eIfrireKdIpv--e~velke~vi~FaWEP-~gdkF~vi~g~~~k~tvsfY~~e~~~--~~~~lVk~~d--k~~~N~v  498 (698)
T KOG2314|consen  426 NLEIFRIREKDIPV--EVVELKESVIAFAWEP-HGDKFAVISGNTVKNTVSFYAVETNI--KKPSLVKELD--KKFANTV  498 (698)
T ss_pred             eEEEEEeeccCCCc--eeeecchheeeeeecc-CCCeEEEEEccccccceeEEEeecCC--Cchhhhhhhc--ccccceE
Confidence            35566665555322  2234567899999999 8877766543   3578999888421  1134455554  3567899


Q ss_pred             EEecCCCcEEEEe--cCCCcEEEEeCCcccccccCCCCCcCCCCceeeeecCCCcceeeEEEccCCCeEEEEecCCCCCC
Q 021657          192 QWSPDKSSVFGSS--AEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKVVDFHWNASDPWTVVSVSDDCDST  269 (309)
Q Consensus       192 ~~~~~~~~l~~~~--~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~s~d~~s~  269 (309)
                      .|+|.|+++++.+  +..|.+..+|+......              ......| ...+.+.|.|.|.+++.+.|.=  ..
T Consensus       499 fwsPkG~fvvva~l~s~~g~l~F~D~~~a~~k--------------~~~~~eh-~~at~veWDPtGRYvvT~ss~w--rh  561 (698)
T KOG2314|consen  499 FWSPKGRFVVVAALVSRRGDLEFYDTDYADLK--------------DTASPEH-FAATEVEWDPTGRYVVTSSSSW--RH  561 (698)
T ss_pred             EEcCCCcEEEEEEecccccceEEEecchhhhh--------------hccCccc-cccccceECCCCCEEEEeeehh--hh
Confidence            9999999866544  45789999998851111              1111222 3468899999998866554432  45


Q ss_pred             CCCCeEEEEEcc
Q 021657          270 GGGGTLQIWRMS  281 (309)
Q Consensus       270 ~~dg~v~vw~~~  281 (309)
                      ..|.--++|++.
T Consensus       562 k~d~GYri~tfq  573 (698)
T KOG2314|consen  562 KVDNGYRIFTFQ  573 (698)
T ss_pred             ccccceEEEEee
Confidence            667889999987

>KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only]

Probab=99.17  E-value=4.3e-10  Score=101.55  Aligned_cols=166  Identities=13%  Similarity=0.233  Sum_probs=129.4

Q ss_pred             ccCCeEEEEEecCCCcEEEEEcCCCeEEEEEcCCCCcceEEEeeccCCceeEEEeccCCCCeEEEEcCCCcEEEEecCCC
Q 021657           90 HEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNL  169 (309)
Q Consensus        90 ~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~  169 (309)
                      +-..|.++.-+|.. .+.+||+.||.+++|....++...... ......|+.+.|+. +|+.+..+..||.+.+|...  
T Consensus      2207 ~v~~v~r~~sHp~~-~~Yltgs~dgsv~~~~w~~~~~v~~~r-t~g~s~vtr~~f~~-qGnk~~i~d~dg~l~l~q~~-- 2281 (2439)
T KOG1064|consen 2207 PVENVRRMTSHPSD-PYYLTGSQDGSVRMFEWGHGQQVVCFR-TAGNSRVTRSRFNH-QGNKFGIVDGDGDLSLWQAS-- 2281 (2439)
T ss_pred             ccCceeeecCCCCC-ceEEecCCCceEEEEeccCCCeEEEee-ccCcchhhhhhhcc-cCCceeeeccCCceeecccC--
Confidence            44567788888887 678899999999999988777433333 34448899999999 99999999999999999987  


Q ss_pred             CCCCCCCceeeeccCCCCeeEEEEecCCCcEEEEec---CCCcEEEEeCCcccccccCCCCCcCCCCceeeeecCCCcce
Q 021657          170 TSNGVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSA---EDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKV  246 (309)
Q Consensus       170 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~---~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v  246 (309)
                           .++....+.|+.....+.|-..   ++++++   .++.+.+||.......              -....+|.+.+
T Consensus      2282 -----pk~~~s~qchnk~~~Df~Fi~s---~~~tag~s~d~~n~~lwDtl~~~~~--------------s~v~~~H~~ga 2339 (2439)
T KOG1064|consen 2282 -----PKPYTSWQCHNKALSDFRFIGS---LLATAGRSSDNRNVCLWDTLLPPMN--------------SLVHTCHDGGA 2339 (2439)
T ss_pred             -----CcceeccccCCccccceeeeeh---hhhccccCCCCCcccchhcccCccc--------------ceeeeecCCCc
Confidence                 4678888889998888888763   455654   5788999998763221              12237899999


Q ss_pred             eeEEEccCCCeEEEEecCCCCCCCCCCeEEEEEccccccCChhhHhHhhh
Q 021657          247 VDFHWNASDPWTVVSVSDDCDSTGGGGTLQIWRMSDLIYRPQDEVLAELE  296 (309)
Q Consensus       247 ~~~~~~~~~~~~~~s~s~d~~s~~~dg~v~vw~~~~~~~~~~~~~~~~~~  296 (309)
                      +.+++-|..+.++        |||.+|.|++||++      ..+....++
T Consensus      2340 T~l~~~P~~qlli--------sggr~G~v~l~D~r------qrql~h~~~ 2375 (2439)
T KOG1064|consen 2340 TVLAYAPKHQLLI--------SGGRKGEVCLFDIR------QRQLRHTFQ 2375 (2439)
T ss_pred             eEEEEcCcceEEE--------ecCCcCcEEEeehH------HHHHHHHhh
Confidence            9999999766555        77777999999999      666665554

>PLN02919 haloacid dehalogenase-like hydrolase family protein

Probab=99.17  E-value=3.5e-08  Score=89.91  Aligned_cols=166  Identities=14%  Similarity=0.211  Sum_probs=104.4

Q ss_pred             EEEEEecCCCcEEEEEcCCCeEEEEEcCCCCcceEEEeec---------------cCCceeEEEeccCCCC-eEEEEcCC
Q 021657           95 EDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPVIKVEKA---------------HDADLHCVDWNPLDDN-LILTGSAD  158 (309)
Q Consensus        95 ~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~---------------~~~~v~~~~~~~~~~~-~l~~~~~d  158 (309)
                      ..++++|+++.++++.+.++.|++||...+.  . ..+.+               .-.....|+++| ++. ++++-..+
T Consensus       686 ~gVa~dp~~g~LyVad~~~~~I~v~d~~~g~--v-~~~~G~G~~~~~~g~~~~~~~~~~P~GIavsp-dG~~LYVADs~n  761 (1057)
T PLN02919        686 WDVCFEPVNEKVYIAMAGQHQIWEYNISDGV--T-RVFSGDGYERNLNGSSGTSTSFAQPSGISLSP-DLKELYIADSES  761 (1057)
T ss_pred             eEEEEecCCCeEEEEECCCCeEEEEECCCCe--E-EEEecCCccccCCCCccccccccCccEEEEeC-CCCEEEEEECCC
Confidence            5789999654788888889999999987665  1 11111               112456799999 776 55666677


Q ss_pred             CcEEEEecCCCCCCCCCCcee-------------eeccC--------CCCeeEEEEecCCCcEEEEecCCCcEEEEeCCc
Q 021657          159 NSVRMFDRRNLTSNGVGSPIN-------------KFEGH--------SAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEK  217 (309)
Q Consensus       159 g~i~i~d~~~~~~~~~~~~~~-------------~~~~~--------~~~v~~~~~~~~~~~l~~~~~~dg~i~iwd~~~  217 (309)
                      +.|++||+.+      +....             .+...        -.....++++++|. ++++-..++.|++||...
T Consensus       762 ~~Irv~D~~t------g~~~~~~gg~~~~~~~l~~fG~~dG~g~~~~l~~P~Gvavd~dG~-LYVADs~N~rIrviD~~t  834 (1057)
T PLN02919        762 SSIRALDLKT------GGSRLLAGGDPTFSDNLFKFGDHDGVGSEVLLQHPLGVLCAKDGQ-IYVADSYNHKIKKLDPAT  834 (1057)
T ss_pred             CeEEEEECCC------CcEEEEEecccccCcccccccCCCCchhhhhccCCceeeEeCCCc-EEEEECCCCEEEEEECCC
Confidence            9999999886      22110             11000        11246889999998 677888899999999876


Q ss_pred             ccccccCCCCCc-CCCCceeeeecCCCcceeeEEEccCCCeEEEEecCCCCCCCCCCeEEEEEccc
Q 021657          218 VGKKVEQGPRTT-NYPAGLFFQHAGHRDKVVDFHWNASDPWTVVSVSDDCDSTGGGGTLQIWRMSD  282 (309)
Q Consensus       218 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~s~d~~s~~~dg~v~vw~~~~  282 (309)
                       +.......... .....  ....+.-.....+++++++. ++++-+.+       +.|++||+..
T Consensus       835 -g~v~tiaG~G~~G~~dG--~~~~a~l~~P~GIavd~dG~-lyVaDt~N-------n~Irvid~~~  889 (1057)
T PLN02919        835 -KRVTTLAGTGKAGFKDG--KALKAQLSEPAGLALGENGR-LFVADTNN-------SLIRYLDLNK  889 (1057)
T ss_pred             -CeEEEEeccCCcCCCCC--cccccccCCceEEEEeCCCC-EEEEECCC-------CEEEEEECCC
Confidence             22211100000 00000  00122334578899999886 55544444       8999999974

>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal

Probab=99.17  E-value=2e-08  Score=74.48  Aligned_cols=197  Identities=14%  Similarity=0.221  Sum_probs=105.5

Q ss_pred             EEEEECCCCCEEEEecCCCcEEEEeCCccccccccCCccccccCCCCceeecCCCCCCCCcccCCCCCcCcccccccccC
Q 021657           13 FALAMCPTEPYVLSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHED   92 (309)
Q Consensus        13 ~~~~~~~~~~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   92 (309)
                      +.++||||+.+||.+...|+|+++|+...... ...+....                                 ...-..
T Consensus        47 Rkl~WSpD~tlLa~a~S~G~i~vfdl~g~~lf-~I~p~~~~---------------------------------~~d~~~   92 (282)
T PF15492_consen   47 RKLAWSPDCTLLAYAESTGTIRVFDLMGSELF-VIPPAMSF---------------------------------PGDLSD   92 (282)
T ss_pred             eEEEECCCCcEEEEEcCCCeEEEEecccceeE-EcCccccc---------------------------------CCcccc
Confidence            57899999999999999999999998753211 11110000                                 001234


Q ss_pred             CeEEEEEecCC-----CcEEEEEcCCCeEEEEEcCCCC---cceEEE--ee-ccCCceeEEEeccCCCCeEEEEcCCCcE
Q 021657           93 TVEDVTFCPSS-----AQEFCSVGDDSCLILWDARVGT---SPVIKV--EK-AHDADLHCVDWNPLDDNLILTGSADNSV  161 (309)
Q Consensus        93 ~v~~~~~~~~~-----~~~l~s~~~dg~i~iwd~~~~~---~~~~~~--~~-~~~~~v~~~~~~~~~~~~l~~~~~dg~i  161 (309)
                      .|..|.|.+..     ...|+.-..+|.++-|-+..+.   ......  +. .+...|.++.|+| ..++|++|+.... 
T Consensus        93 Aiagl~Fl~~~~s~~ws~ELlvi~Y~G~L~Sy~vs~gt~q~y~e~hsfsf~~~yp~Gi~~~vy~p-~h~LLlVgG~~~~-  170 (282)
T PF15492_consen   93 AIAGLIFLEYKKSAQWSYELLVINYRGQLRSYLVSVGTNQGYQENHSFSFSSHYPHGINSAVYHP-KHRLLLVGGCEQN-  170 (282)
T ss_pred             ceeeeEeeccccccccceeEEEEeccceeeeEEEEcccCCcceeeEEEEecccCCCceeEEEEcC-CCCEEEEeccCCC-
Confidence            45555554321     1345566677888877654321   111222  22 2467899999999 7788777765432 


Q ss_pred             EEEecCCCCCCCCCCceeeeccCCCCeeEEEEecCCCcEE-EEecCCCc------EEEEeCCcccccccCCCCCcCCCCc
Q 021657          162 RMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWSPDKSSVF-GSSAEDGL------LNIWDYEKVGKKVEQGPRTTNYPAG  234 (309)
Q Consensus       162 ~i~d~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-~~~~~dg~------i~iwd~~~~~~~~~~~~~~~~~~~~  234 (309)
                           +.      +.    -++....+++-..-.+.++.. +....|+.      ..+|.+-+               ..
T Consensus       171 -----~~------~~----s~a~~~GLtaWRiL~~~Pyyk~v~~~~~~~~~~~~~~~~~~~~~---------------~~  220 (282)
T PF15492_consen  171 -----QD------GM----SKASSCGLTAWRILSDSPYYKQVTSSEDDITASSKRRGLLRIPS---------------FK  220 (282)
T ss_pred             -----CC------cc----ccccccCceEEEEcCCCCcEEEccccCccccccccccceeeccc---------------ee
Confidence                 11      00    011222333333333333221 12221211      12222221               11


Q ss_pred             eeeeecCCCcceeeEEEccCCCeEEEEecCCCCCCCCCCeEEEEEcccc
Q 021657          235 LFFQHAGHRDKVVDFHWNASDPWTVVSVSDDCDSTGGGGTLQIWRMSDL  283 (309)
Q Consensus       235 ~~~~~~~~~~~v~~~~~~~~~~~~~~s~s~d~~s~~~dg~v~vw~~~~~  283 (309)
                      ...........|..|..+|++.. +|+...+       |.|.+|++..+
T Consensus       221 ~fs~~~~~~d~i~kmSlSPdg~~-La~ih~s-------G~lsLW~iPsL  261 (282)
T PF15492_consen  221 FFSRQGQEQDGIFKMSLSPDGSL-LACIHFS-------GSLSLWEIPSL  261 (282)
T ss_pred             eeeccccCCCceEEEEECCCCCE-EEEEEcC-------CeEEEEecCcc
Confidence            11112234568999999998875 4444444       99999999843

>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide

Probab=99.17  E-value=5.2e-11  Score=62.77  Aligned_cols=36  Identities=22%  Similarity=0.564  Sum_probs=34.0

Q ss_pred             CcccCCCCCcceEEEEECCCCCEEEEecCCCcEEEEe
Q 021657            1 MEILTGHQDNAEFALAMCPTEPYVLSGGKDKSVVLWS   37 (309)
Q Consensus         1 l~~l~~H~~~~V~~~~~~~~~~~l~t~~~dg~i~vwd   37 (309)
                      ++++++|.+ .|++|+|+|++.+|++|+.|++|++||
T Consensus         4 ~~~~~~h~~-~i~~i~~~~~~~~~~s~~~D~~i~vwd   39 (39)
T PF00400_consen    4 VRTFRGHSS-SINSIAWSPDGNFLASGSSDGTIRVWD   39 (39)
T ss_dssp             EEEEESSSS-SEEEEEEETTSSEEEEEETTSEEEEEE
T ss_pred             EEEEcCCCC-cEEEEEEecccccceeeCCCCEEEEEC
Confidence            367899999 899999999999999999999999997

WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....

>KOG2695 consensus WD40 repeat protein [General function prediction only]

Probab=99.15  E-value=3.1e-10  Score=85.78  Aligned_cols=122  Identities=14%  Similarity=0.249  Sum_probs=94.0

Q ss_pred             ccCCeEEEEEecCCCcEEEEEcCCCeEEEEEcCCCC---cceEEEeeccCCceeEEEeccCCCCeEEEEcCCCcEEEEec
Q 021657           90 HEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGT---SPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDR  166 (309)
Q Consensus        90 ~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~---~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~  166 (309)
                      ..+.|.++.|...+ .++..|+.+|.|..+|++.+.   ...... .-|.+.|+++..-..++++|++.+.+|+|.+||+
T Consensus       251 sksDVfAlQf~~s~-nLv~~GcRngeI~~iDLR~rnqG~~~~a~r-lyh~Ssvtslq~Lq~s~q~LmaS~M~gkikLyD~  328 (425)
T KOG2695|consen  251 SKSDVFALQFAGSD-NLVFNGCRNGEIFVIDLRCRNQGNGWCAQR-LYHDSSVTSLQILQFSQQKLMASDMTGKIKLYDL  328 (425)
T ss_pred             cchhHHHHHhcccC-CeeEecccCCcEEEEEeeecccCCCcceEE-EEcCcchhhhhhhccccceEeeccCcCceeEeee
Confidence            45678889998877 889999999999999998762   112223 3588999999987768899999999999999999


Q ss_pred             CCCCCCCCCCceeeeccCCCCeeE--EEEecCCCcEEEEecCCCcEEEEeCCc
Q 021657          167 RNLTSNGVGSPINKFEGHSAAVLC--VQWSPDKSSVFGSSAEDGLLNIWDYEK  217 (309)
Q Consensus       167 ~~~~~~~~~~~~~~~~~~~~~v~~--~~~~~~~~~l~~~~~~dg~i~iwd~~~  217 (309)
                      |..+.   ++-+.++++|-..-.-  +-..+.... ++++++|...+||.++.
T Consensus       329 R~~K~---~~~V~qYeGHvN~~a~l~~~v~~eeg~-I~s~GdDcytRiWsl~~  377 (425)
T KOG2695|consen  329 RATKC---KKSVMQYEGHVNLSAYLPAHVKEEEGS-IFSVGDDCYTRIWSLDS  377 (425)
T ss_pred             hhhhc---ccceeeeecccccccccccccccccce-EEEccCeeEEEEEeccc
Confidence            98322   3348899888654333  334555554 55799999999999997

>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]

Probab=99.14  E-value=3.8e-08  Score=79.32  Aligned_cols=260  Identities=10%  Similarity=0.079  Sum_probs=150.8

Q ss_pred             ceEEEEECCCCCEEEEecCCCcEEEEeCCccccccccCCcccccc--CC--------CCceeecCCCCCCCCcccCCCCC
Q 021657           11 AEFALAMCPTEPYVLSGGKDKSVVLWSIQDHITSSATDPATAKSA--GS--------SGSIIKQSPKPGDGNDKAADGPS   80 (309)
Q Consensus        11 ~V~~~~~~~~~~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~~~--~~--------~~~~~~~~~~~~~~~~~~~~~~~   80 (309)
                      +++..+++++|++++.+. +..++|++..................  ..        ...............+.+|+..+
T Consensus        36 ~~~v~~~S~~G~lfA~~~-~~~v~i~~~~~~~~~lt~~~~~~~~L~fSP~g~yL~T~e~~~i~~~~~~~~pn~~v~~vet  114 (566)
T KOG2315|consen   36 PCNVFAYSNNGRLFAYSD-NQVVKVFEIATLKVVLCVELKKTYDLLFSPKGNYLLTWEPWAIYGPKNASNPNVLVYNVET  114 (566)
T ss_pred             cceeEEEcCCCcEEEEEc-CCeEEEEEccCCcEEEEeccceeeeeeecccccccccccccccccCCCCCCCceeeeeecc
Confidence            356788999998777655 56899999887632222211111100  00        00011111122245667788777


Q ss_pred             cCcccccccccCCeEEEEEecCCCcEEEEEcCCCeEEEEEcCCCCcceEEEeeccCCceeEEEeccCC-C-CeEEE----
Q 021657           81 VGPRGIYNGHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLD-D-NLILT----  154 (309)
Q Consensus        81 ~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~-~~l~~----  154 (309)
                      ......+......-++..|++|. . +++=-..+.+.+|+....+   ...-.-|...|+.+.++| . . ..+++    
T Consensus       115 ~~~~s~~q~k~Q~~W~~qfs~dE-s-l~arlv~nev~f~~~~~f~---~~~~kl~~~~i~~f~lSp-gp~~~~vAvyvPe  188 (566)
T KOG2315|consen  115 GVQRSQIQKKMQNGWVPQFSIDE-S-LAARLVSNEVQFYDLGSFK---TIQHKLSVSGITMLSLSP-GPEPPFVAVYVPE  188 (566)
T ss_pred             ceehhheehhhhcCcccccccch-h-hhhhhhcceEEEEecCCcc---ceeeeeeccceeeEEecC-CCCCceEEEEccC
Confidence            55444444333333788999886 3 3333345679999987654   222234567778888887 4 2 23332    


Q ss_pred             -EcCCCcEEEEecCCCCCCC-------------------C--------------------------------CCceeeec
Q 021657          155 -GSADNSVRMFDRRNLTSNG-------------------V--------------------------------GSPINKFE  182 (309)
Q Consensus       155 -~~~dg~i~i~d~~~~~~~~-------------------~--------------------------------~~~~~~~~  182 (309)
                       .+.-+.++||.........                   .                                ......+ 
T Consensus       189 ~kGaPa~vri~~~~~~~~~~~~a~ksFFkadkvqm~WN~~gt~LLvLastdVDktn~SYYGEq~Lyll~t~g~s~~V~L-  267 (566)
T KOG2315|consen  189 KKGAPASVRIYKYPEEGQHQPVANKSFFKADKVQMKWNKLGTALLVLASTDVDKTNASYYGEQTLYLLATQGESVSVPL-  267 (566)
T ss_pred             CCCCCcEEEEeccccccccchhhhccccccceeEEEeccCCceEEEEEEEeecCCCccccccceEEEEEecCceEEEec-
Confidence             2344567777654210000                   0                                0111111 


Q ss_pred             cCCCCeeEEEEecCCCcEE-EEecCCCcEEEEeCCcccccccCCCCCcCCCCceeeeecCCCcceeeEEEccCCCeEEEE
Q 021657          183 GHSAAVLCVQWSPDKSSVF-GSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKVVDFHWNASDPWTVVS  261 (309)
Q Consensus       183 ~~~~~v~~~~~~~~~~~l~-~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s  261 (309)
                      ...++|.++.|+|+++.+. +-|-.-..+.|||++.                .+++.+  ..++=+++-|+|.|..++++
T Consensus       268 ~k~GPVhdv~W~~s~~EF~VvyGfMPAkvtifnlr~----------------~~v~df--~egpRN~~~fnp~g~ii~lA  329 (566)
T KOG2315|consen  268 LKEGPVHDVTWSPSGREFAVVYGFMPAKVTIFNLRG----------------KPVFDF--PEGPRNTAFFNPHGNIILLA  329 (566)
T ss_pred             CCCCCceEEEECCCCCEEEEEEecccceEEEEcCCC----------------CEeEeC--CCCCccceEECCCCCEEEEe
Confidence            1368999999999997533 2344667899999986                233333  35667889999999877765


Q ss_pred             ecCCCCCCCCCCeEEEEEccccccCChhhHhHhhhcccceEEEeeeCC
Q 021657          262 VSDDCDSTGGGGTLQIWRMSDLIYRPQDEVLAELEKFKAHVISCTSKP  309 (309)
Q Consensus       262 ~s~d~~s~~~dg~v~vw~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~P  309 (309)
                      |     =|.--|.|-|||+.      +.+++..+..-  ..+-+.|+|
T Consensus       330 G-----FGNL~G~mEvwDv~------n~K~i~~~~a~--~tt~~eW~P  364 (566)
T KOG2315|consen  330 G-----FGNLPGDMEVWDVP------NRKLIAKFKAA--NTTVFEWSP  364 (566)
T ss_pred             e-----cCCCCCceEEEecc------chhhccccccC--CceEEEEcC
Confidence            5     23356899999999      66777776642  334455555

>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain

Probab=99.13  E-value=1e-07  Score=75.44  Aligned_cols=244  Identities=10%  Similarity=0.039  Sum_probs=129.9

Q ss_pred             ECCCCCEEEEecC----------CCcEEEEeCCccccccccCCcc-----------ccccCCCCceeecCCCCCCCCccc
Q 021657           17 MCPTEPYVLSGGK----------DKSVVLWSIQDHITSSATDPAT-----------AKSAGSSGSIIKQSPKPGDGNDKA   75 (309)
Q Consensus        17 ~~~~~~~l~t~~~----------dg~i~vwd~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~   75 (309)
                      ++||++.|..+..          +..|.+||..+...........           ...........++........+.+
T Consensus        53 ~spDg~~lyva~~~~~R~~~G~~~d~V~v~D~~t~~~~~~i~~p~~p~~~~~~~~~~~~ls~dgk~l~V~n~~p~~~V~V  132 (352)
T TIGR02658        53 VASDGSFFAHASTVYSRIARGKRTDYVEVIDPQTHLPIADIELPEGPRFLVGTYPWMTSLTPDNKTLLFYQFSPSPAVGV  132 (352)
T ss_pred             ECCCCCEEEEEeccccccccCCCCCEEEEEECccCcEEeEEccCCCchhhccCccceEEECCCCCEEEEecCCCCCEEEE
Confidence            8999998776554          8899999999875443322111           112223333334344444556666


Q ss_pred             CCCCCcCcccccccccCCeEEEEEecCCCcEEEEEcCCCeEEEEEcCCCCcceEEE---eeccCCceeE-EEeccCCCCe
Q 021657           76 ADGPSVGPRGIYNGHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPVIKV---EKAHDADLHC-VDWNPLDDNL  151 (309)
Q Consensus        76 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~---~~~~~~~v~~-~~~~~~~~~~  151 (309)
                      .|..+.+.+..+.--. ...-+..+++.   +..-+.||......+.+........   +.....++.. -.|.+.++.+
T Consensus       133 vD~~~~kvv~ei~vp~-~~~vy~t~e~~---~~~~~~Dg~~~~v~~d~~g~~~~~~~~vf~~~~~~v~~rP~~~~~dg~~  208 (352)
T TIGR02658       133 VDLEGKAFVRMMDVPD-CYHIFPTANDT---FFMHCRDGSLAKVGYGTKGNPKIKPTEVFHPEDEYLINHPAYSNKSGRL  208 (352)
T ss_pred             EECCCCcEEEEEeCCC-CcEEEEecCCc---cEEEeecCceEEEEecCCCceEEeeeeeecCCccccccCCceEcCCCcE
Confidence            6666666555444211 11111111111   1122344444443332221111111   1110000000 0334436777


Q ss_pred             EEEEcCCCcEEEEecCCCCCCCCCCceeeec-------cCCCCeeEEEEecCCCcEEEEec---------CCCcEEEEeC
Q 021657          152 ILTGSADNSVRMFDRRNLTSNGVGSPINKFE-------GHSAAVLCVQWSPDKSSVFGSSA---------EDGLLNIWDY  215 (309)
Q Consensus       152 l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~-------~~~~~v~~~~~~~~~~~l~~~~~---------~dg~i~iwd~  215 (309)
                      +.+... |.|.+.|+....... ......+.       ...+.+.-++++++++++++...         ..+.|.++|.
T Consensus       209 ~~vs~e-G~V~~id~~~~~~~~-~~~~~~~~~~~~~~~wrP~g~q~ia~~~dg~~lyV~~~~~~~~thk~~~~~V~ViD~  286 (352)
T TIGR02658       209 VWPTYT-GKIFQIDLSSGDAKF-LPAIEAFTEAEKADGWRPGGWQQVAYHRARDRIYLLADQRAKWTHKTASRFLFVVDA  286 (352)
T ss_pred             EEEecC-CeEEEEecCCCccee-cceeeeccccccccccCCCcceeEEEcCCCCEEEEEecCCccccccCCCCEEEEEEC
Confidence            777665 999999965422100 22222221       12334556999999998886442         2257999998


Q ss_pred             CcccccccCCCCCcCCCCceeeeecCCCcceeeEEEccCCC-eEEEEecCCCCCCCCCCeEEEEEccccccCChhhHhHh
Q 021657          216 EKVGKKVEQGPRTTNYPAGLFFQHAGHRDKVVDFHWNASDP-WTVVSVSDDCDSTGGGGTLQIWRMSDLIYRPQDEVLAE  294 (309)
Q Consensus       216 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~~~~s~s~d~~s~~~dg~v~vw~~~~~~~~~~~~~~~~  294 (309)
                      .+               .+.+..+. -...+..++++|++. .++++...       ++.|.+.|..      +.+.+++
T Consensus       287 ~t---------------~kvi~~i~-vG~~~~~iavS~Dgkp~lyvtn~~-------s~~VsViD~~------t~k~i~~  337 (352)
T TIGR02658       287 KT---------------GKRLRKIE-LGHEIDSINVSQDAKPLLYALSTG-------DKTLYIFDAE------TGKELSS  337 (352)
T ss_pred             CC---------------CeEEEEEe-CCCceeeEEECCCCCeEEEEeCCC-------CCcEEEEECc------CCeEEee
Confidence            87               22333332 234789999999998 66664433       3889999998      6666666


Q ss_pred             h
Q 021657          295 L  295 (309)
Q Consensus       295 ~  295 (309)
                      +
T Consensus       338 i  338 (352)
T TIGR02658       338 V  338 (352)
T ss_pred             e
Confidence            6

This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.

>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]

Probab=99.11  E-value=1.4e-07  Score=74.83  Aligned_cols=117  Identities=15%  Similarity=0.224  Sum_probs=88.5

Q ss_pred             CCCCcceEEEEECCCCCEEEEecCCC-cEEEEeCCccccccccCCccccccCCCCceeecCCCCCCCCcccCCCCCcCcc
Q 021657            6 GHQDNAEFALAMCPTEPYVLSGGKDK-SVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPR   84 (309)
Q Consensus         6 ~H~~~~V~~~~~~~~~~~l~t~~~dg-~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   84 (309)
                      +|.+ .|.=..+..+++-++.|..|| .+-|+|.+++                                         ..
T Consensus       357 ~~~~-~VrY~r~~~~~e~~vigt~dgD~l~iyd~~~~-----------------------------------------e~  394 (668)
T COG4946         357 GKKG-GVRYRRIQVDPEGDVIGTNDGDKLGIYDKDGG-----------------------------------------EV  394 (668)
T ss_pred             CCCC-ceEEEEEccCCcceEEeccCCceEEEEecCCc-----------------------------------------eE
Confidence            3444 355555666666677777777 6777776643                                         22


Q ss_pred             cccccccCCeEEEEEecCCCcEEEEEcCCCeEEEEEcCCCCcceEEEeeccCCceeEEEeccCCCCeEEEEcCCC----c
Q 021657           85 GIYNGHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADN----S  160 (309)
Q Consensus        85 ~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg----~  160 (309)
                      ..+.+.-+.|.++..+++| +.++.+.....|.+.|+.+++  ....-+...+-|+.+.|+| +++++|-+--+|    .
T Consensus       395 kr~e~~lg~I~av~vs~dG-K~~vvaNdr~el~vididngn--v~~idkS~~~lItdf~~~~-nsr~iAYafP~gy~tq~  470 (668)
T COG4946         395 KRIEKDLGNIEAVKVSPDG-KKVVVANDRFELWVIDIDNGN--VRLIDKSEYGLITDFDWHP-NSRWIAYAFPEGYYTQS  470 (668)
T ss_pred             EEeeCCccceEEEEEcCCC-cEEEEEcCceEEEEEEecCCC--eeEecccccceeEEEEEcC-CceeEEEecCcceeeee
Confidence            3445566789999999999 778888888999999999998  5555555667899999999 999999887776    5


Q ss_pred             EEEEecCC
Q 021657          161 VRMFDRRN  168 (309)
Q Consensus       161 i~i~d~~~  168 (309)
                      |+++|+..
T Consensus       471 Iklydm~~  478 (668)
T COG4946         471 IKLYDMDG  478 (668)
T ss_pred             EEEEecCC
Confidence            88999876

>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]

Probab=99.11  E-value=3.2e-07  Score=70.35  Aligned_cols=223  Identities=9%  Similarity=0.123  Sum_probs=137.3

Q ss_pred             CCCcceEEEEECCCCCEEEEecCC---CcEEEEeCCccccccccCCccccccCCCCceeecCCCCCCCCcccCCCCCcCc
Q 021657            7 HQDNAEFALAMCPTEPYVLSGGKD---KSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGP   83 (309)
Q Consensus         7 H~~~~V~~~~~~~~~~~l~t~~~d---g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   83 (309)
                      +.+ .++=|+|+|++++|.++-.+   |.|-.|.++...-.+.                                    .
T Consensus        38 ~~~-nptyl~~~~~~~~LY~v~~~~~~ggvaay~iD~~~G~Lt------------------------------------~   80 (346)
T COG2706          38 ELG-NPTYLAVNPDQRHLYVVNEPGEEGGVAAYRIDPDDGRLT------------------------------------F   80 (346)
T ss_pred             ccC-CCceEEECCCCCEEEEEEecCCcCcEEEEEEcCCCCeEE------------------------------------E
Confidence            344 45788999999988887654   6777777763100000                                    0


Q ss_pred             ccccccccCCeEEEEEecCCCcEEEEEcCCCeEEEEEcCC-CCcceEEEeeccCCc----------eeEEEeccCCCCeE
Q 021657           84 RGIYNGHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARV-GTSPVIKVEKAHDAD----------LHCVDWNPLDDNLI  152 (309)
Q Consensus        84 ~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~-~~~~~~~~~~~~~~~----------v~~~~~~~~~~~~l  152 (309)
                      +........+-+-+++++++..++.+-..-|.|.++-++. +..........|.+.          +....+.| +++++
T Consensus        81 ln~~~~~g~~p~yvsvd~~g~~vf~AnY~~g~v~v~p~~~dG~l~~~v~~~~h~g~~p~~rQ~~~h~H~a~~tP-~~~~l  159 (346)
T COG2706          81 LNRQTLPGSPPCYVSVDEDGRFVFVANYHSGSVSVYPLQADGSLQPVVQVVKHTGSGPHERQESPHVHSANFTP-DGRYL  159 (346)
T ss_pred             eeccccCCCCCeEEEECCCCCEEEEEEccCceEEEEEcccCCccccceeeeecCCCCCCccccCCccceeeeCC-CCCEE
Confidence            1111111223378899999944444555678999999866 332122223334444          88899999 89888


Q ss_pred             EEEcC-CCcEEEEecCCCCCCCCCCceeeeccCCCCeeEEEEecCCCcEEEEecCCCcEEEEeCCcccccccCCCCCcCC
Q 021657          153 LTGSA-DNSVRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNY  231 (309)
Q Consensus       153 ~~~~~-dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~  231 (309)
                      ++... -..|.+|++.......  .....+ ......+.|.|+|++++.++..--+++|.+|..................
T Consensus       160 ~v~DLG~Dri~~y~~~dg~L~~--~~~~~v-~~G~GPRHi~FHpn~k~aY~v~EL~stV~v~~y~~~~g~~~~lQ~i~tl  236 (346)
T COG2706         160 VVPDLGTDRIFLYDLDDGKLTP--ADPAEV-KPGAGPRHIVFHPNGKYAYLVNELNSTVDVLEYNPAVGKFEELQTIDTL  236 (346)
T ss_pred             EEeecCCceEEEEEcccCcccc--cccccc-CCCCCcceEEEcCCCcEEEEEeccCCEEEEEEEcCCCceEEEeeeeccC
Confidence            88765 3479999998632111  011122 2345678999999999888888889999999998853322221111101


Q ss_pred             CCceeeeecCCCcceeeEEEccCCCeEEEEecCCCCCCCCCCeEEEEEccc
Q 021657          232 PAGLFFQHAGHRDKVVDFHWNASDPWTVVSVSDDCDSTGGGGTLQIWRMSD  282 (309)
Q Consensus       232 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~s~d~~s~~~dg~v~vw~~~~  282 (309)
                      |.    .+. -..+..+|..+|+|++|.++-=.       ...|-+|.+..
T Consensus       237 P~----dF~-g~~~~aaIhis~dGrFLYasNRg-------~dsI~~f~V~~  275 (346)
T COG2706         237 PE----DFT-GTNWAAAIHISPDGRFLYASNRG-------HDSIAVFSVDP  275 (346)
T ss_pred             cc----ccC-CCCceeEEEECCCCCEEEEecCC-------CCeEEEEEEcC
Confidence            10    111 23467889999999988875322       24777777764

>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation []

Probab=99.09  E-value=3.4e-08  Score=88.45  Aligned_cols=189  Identities=15%  Similarity=0.266  Sum_probs=107.5

Q ss_pred             ceEEEEECCCCCEEEEecCCCcEEEEeCCccccccccCCccccccCCCCceeecCCCCC-------CCCc---ccCCCCC
Q 021657           11 AEFALAMCPTEPYVLSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPG-------DGND---KAADGPS   80 (309)
Q Consensus        11 ~V~~~~~~~~~~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~---~~~~~~~   80 (309)
                      .|.+++||||+..|+..+.++++.+-.-. .......... ...... .....+..|..       .+..   ..-+...
T Consensus       122 GI~a~~WSPD~Ella~vT~~~~l~~mt~~-fd~i~E~~l~-~~~~~~-~~~VsVGWGkKeTQF~Gs~gK~aa~~~~~p~~  198 (928)
T PF04762_consen  122 GILAASWSPDEELLALVTGEGNLLLMTRD-FDPISEVPLD-SDDFGE-SKHVSVGWGKKETQFHGSAGKAAARQLRDPTV  198 (928)
T ss_pred             cEEEEEECCCcCEEEEEeCCCEEEEEecc-ceEEEEeecC-ccccCC-CceeeeccCcccCccCcchhhhhhhhccCCCC
Confidence            58999999999999999999999887532 1100000000 000000 00000000100       0000   0000000


Q ss_pred             c-CcccccccccCCeEEEEEecCCCcEEEEEcC---C---CeEEEEEcCCCCcceEEEeeccCCceeEEEeccCCCCeEE
Q 021657           81 V-GPRGIYNGHEDTVEDVTFCPSSAQEFCSVGD---D---SCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLIL  153 (309)
Q Consensus        81 ~-~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~---d---g~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~  153 (309)
                      . .....+. +...-..++|-.|| .+||+.+-   .   ..++||+-+ +.  .......-.+--.+++|.| +|+++|
T Consensus       199 ~~~d~~~~s-~dd~~~~ISWRGDG-~yFAVss~~~~~~~~R~iRVy~Re-G~--L~stSE~v~gLe~~l~WrP-sG~lIA  272 (928)
T PF04762_consen  199 PKVDEGKLS-WDDGRVRISWRGDG-EYFAVSSVEPETGSRRVIRVYSRE-GE--LQSTSEPVDGLEGALSWRP-SGNLIA  272 (928)
T ss_pred             CccccCccc-cCCCceEEEECCCC-cEEEEEEEEcCCCceeEEEEECCC-ce--EEeccccCCCccCCccCCC-CCCEEE
Confidence            0 0011222 34455679999999 78887763   2   579999854 55  3333333334456889999 999999


Q ss_pred             EEcC---CCcEEEEecCCCCCCCCCCceeeec----cCCCCeeEEEEecCCCcEEEEecCCCcEEEEeCCc
Q 021657          154 TGSA---DNSVRMFDRRNLTSNGVGSPINKFE----GHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEK  217 (309)
Q Consensus       154 ~~~~---dg~i~i~d~~~~~~~~~~~~~~~~~----~~~~~v~~~~~~~~~~~l~~~~~~dg~i~iwd~~~  217 (309)
                      +.-.   ...|.+|.-.       |-.-..|.    .....|..++|++|+. +||.-..|. |.+|-..+
T Consensus       273 ~~q~~~~~~~VvFfErN-------GLrhgeF~l~~~~~~~~v~~l~Wn~ds~-iLAv~~~~~-vqLWt~~N  334 (928)
T PF04762_consen  273 SSQRLPDRHDVVFFERN-------GLRHGEFTLRFDPEEEKVIELAWNSDSE-ILAVWLEDR-VQLWTRSN  334 (928)
T ss_pred             EEEEcCCCcEEEEEecC-------CcEeeeEecCCCCCCceeeEEEECCCCC-EEEEEecCC-ceEEEeeC
Confidence            8765   3456677644       33333332    3456799999999999 566766554 99999887

>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species

Probab=99.08  E-value=2.9e-07  Score=70.73  Aligned_cols=216  Identities=14%  Similarity=0.163  Sum_probs=132.8

Q ss_pred             EEEECC-CCCEEEEecCCCcEEEEeCCccccccccCCccccccCCCCceeecCCCCCCCCcccCCCCCcCcccccccccC
Q 021657           14 ALAMCP-TEPYVLSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHED   92 (309)
Q Consensus        14 ~~~~~~-~~~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   92 (309)
                      ++.|.+ ++.++++--..+.|..|+..++....                                         +. .. 
T Consensus         4 gp~~d~~~g~l~~~D~~~~~i~~~~~~~~~~~~-----------------------------------------~~-~~-   40 (246)
T PF08450_consen    4 GPVWDPRDGRLYWVDIPGGRIYRVDPDTGEVEV-----------------------------------------ID-LP-   40 (246)
T ss_dssp             EEEEETTTTEEEEEETTTTEEEEEETTTTEEEE-----------------------------------------EE-SS-
T ss_pred             ceEEECCCCEEEEEEcCCCEEEEEECCCCeEEE-----------------------------------------Ee-cC-
Confidence            578888 77788888889999999987542211                                         11 11 


Q ss_pred             CeEEEEEe-cCCCcEEEEEcCCCeEEEEEcCCCCcceEEEee--c-cCCceeEEEeccCCCCeEEEEcCC--------Cc
Q 021657           93 TVEDVTFC-PSSAQEFCSVGDDSCLILWDARVGTSPVIKVEK--A-HDADLHCVDWNPLDDNLILTGSAD--------NS  160 (309)
Q Consensus        93 ~v~~~~~~-~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~--~-~~~~v~~~~~~~~~~~~l~~~~~d--------g~  160 (309)
                      ....+.+. +++ . |+.+...+ +.++|..+++........  . .....+.+++.| ++++.++....        |.
T Consensus        41 ~~~G~~~~~~~g-~-l~v~~~~~-~~~~d~~~g~~~~~~~~~~~~~~~~~~ND~~vd~-~G~ly~t~~~~~~~~~~~~g~  116 (246)
T PF08450_consen   41 GPNGMAFDRPDG-R-LYVADSGG-IAVVDPDTGKVTVLADLPDGGVPFNRPNDVAVDP-DGNLYVTDSGGGGASGIDPGS  116 (246)
T ss_dssp             SEEEEEEECTTS-E-EEEEETTC-EEEEETTTTEEEEEEEEETTCSCTEEEEEEEE-T-TS-EEEEEECCBCTTCGGSEE
T ss_pred             CCceEEEEccCC-E-EEEEEcCc-eEEEecCCCcEEEEeeccCCCcccCCCceEEEcC-CCCEEEEecCCCccccccccc
Confidence            26777887 554 5 44445544 556698887633333332  1 335678999999 88877776544        44


Q ss_pred             EEEEecCCCCCCCCCCceeeeccCCCCeeEEEEecCCCcEEEEecCCCcEEEEeCCcccccccCCCCCcCCCCceeeeec
Q 021657          161 VRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHA  240 (309)
Q Consensus       161 i~i~d~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~  240 (309)
                      |..++...       + +..+...-...+.|+|+|+++.|+++-+..+.|..|++...+....        ....+..+.
T Consensus       117 v~~~~~~~-------~-~~~~~~~~~~pNGi~~s~dg~~lyv~ds~~~~i~~~~~~~~~~~~~--------~~~~~~~~~  180 (246)
T PF08450_consen  117 VYRIDPDG-------K-VTVVADGLGFPNGIAFSPDGKTLYVADSFNGRIWRFDLDADGGELS--------NRRVFIDFP  180 (246)
T ss_dssp             EEEEETTS-------E-EEEEEEEESSEEEEEEETTSSEEEEEETTTTEEEEEEEETTTCCEE--------EEEEEEE-S
T ss_pred             eEEECCCC-------e-EEEEecCcccccceEECCcchheeecccccceeEEEecccccccee--------eeeeEEEcC
Confidence            66666542       2 2223223456789999999998888888899999999975332111        011222333


Q ss_pred             CCCcceeeEEEccCCCeEEEEecCCCCCCCCCCeEEEEEccccccCChhhHhHhhhcccceEEEeee
Q 021657          241 GHRDKVVDFHWNASDPWTVVSVSDDCDSTGGGGTLQIWRMSDLIYRPQDEVLAELEKFKAHVISCTS  307 (309)
Q Consensus       241 ~~~~~v~~~~~~~~~~~~~~s~s~d~~s~~~dg~v~vw~~~~~~~~~~~~~~~~~~~h~~~v~~~~~  307 (309)
                      ......-.+++..++..+++..+.        +.|.+++..       ++.+..+.-....+++++|
T Consensus       181 ~~~g~pDG~~vD~~G~l~va~~~~--------~~I~~~~p~-------G~~~~~i~~p~~~~t~~~f  232 (246)
T PF08450_consen  181 GGPGYPDGLAVDSDGNLWVADWGG--------GRIVVFDPD-------GKLLREIELPVPRPTNCAF  232 (246)
T ss_dssp             SSSCEEEEEEEBTTS-EEEEEETT--------TEEEEEETT-------SCEEEEEE-SSSSEEEEEE
T ss_pred             CCCcCCCcceEcCCCCEEEEEcCC--------CEEEEECCC-------ccEEEEEcCCCCCEEEEEE
Confidence            333457889999988654433322        789999876       5555555544347778877

These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....

>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]

Probab=99.07  E-value=1.9e-10  Score=97.33  Aligned_cols=201  Identities=15%  Similarity=0.226  Sum_probs=140.2

Q ss_pred             cccCCCCCcceEEEEECCCCCEEEEecCCCcEEEEeCCccccccccCCccccccCCCCceeecCCCCCCCCcccCCCCCc
Q 021657            2 EILTGHQDNAEFALAMCPTEPYVLSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSV   81 (309)
Q Consensus         2 ~~l~~H~~~~V~~~~~~~~~~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (309)
                      ++++.|+. .-+|++|+.+.+.|+.|+..|.|+++++.++                                        
T Consensus      1095 ~~frd~~~-~fTc~afs~~~~hL~vG~~~Geik~~nv~sG---------------------------------------- 1133 (1516)
T KOG1832|consen 1095 RSFRDETA-LFTCIAFSGGTNHLAVGSHAGEIKIFNVSSG---------------------------------------- 1133 (1516)
T ss_pred             hhhhcccc-ceeeEEeecCCceEEeeeccceEEEEEccCc----------------------------------------
Confidence            56788887 6799999999999999999999999999854                                        


Q ss_pred             CcccccccccCCeEEEEEecCCCcEEEEEcCCC-eEEEEEcCCCCcceEEEeeccCCceeEEEeccCCCCeEEEEcCCCc
Q 021657           82 GPRGIYNGHEDTVEDVTFCPSSAQEFCSVGDDS-CLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNS  160 (309)
Q Consensus        82 ~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg-~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~  160 (309)
                      .......+|+.+|+-+.-+.+|...|.+++... -..+|++.+-- ...+.+.    .-.++.|+. ....-+.|.....
T Consensus      1134 ~~e~s~ncH~SavT~vePs~dgs~~Ltsss~S~PlsaLW~~~s~~-~~~Hsf~----ed~~vkFsn-~~q~r~~gt~~d~ 1207 (1516)
T KOG1832|consen 1134 SMEESVNCHQSAVTLVEPSVDGSTQLTSSSSSSPLSALWDASSTG-GPRHSFD----EDKAVKFSN-SLQFRALGTEADD 1207 (1516)
T ss_pred             cccccccccccccccccccCCcceeeeeccccCchHHHhcccccc-Ccccccc----ccceeehhh-hHHHHHhcccccc
Confidence            334456779999999999989855555554444 46799986522 2344442    346788887 5666666777778


Q ss_pred             EEEEecCCCCCCCCCCceeeec----cCCCCeeEEEEecCCCcEEEEecCCCcEEEEeCCcccccccCCCCCcCCCCcee
Q 021657          161 VRMFDRRNLTSNGVGSPINKFE----GHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLF  236 (309)
Q Consensus       161 i~i~d~~~~~~~~~~~~~~~~~----~~~~~v~~~~~~~~~~~l~~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~  236 (309)
                      ..+||+.+      ..++.++-    +....-+...|+|+...+|    .||.  +||++..               +.+
T Consensus      1208 a~~YDvqT------~~~l~tylt~~~~~~y~~n~a~FsP~D~LIl----ndGv--LWDvR~~---------------~aI 1260 (1516)
T KOG1832|consen 1208 ALLYDVQT------CSPLQTYLTDTVTSSYSNNLAHFSPCDTLIL----NDGV--LWDVRIP---------------EAI 1260 (1516)
T ss_pred             eEEEeccc------CcHHHHhcCcchhhhhhccccccCCCcceEe----eCce--eeeeccH---------------HHH
Confidence            99999999      66666632    1122336788999998444    3664  8999983               223


Q ss_pred             eeecCCCcceeeEEEccCCCeEEEEecCCCCCCCCCCeEEEEEccccccCChhhHhHhhh
Q 021657          237 FQHAGHRDKVVDFHWNASDPWTVVSVSDDCDSTGGGGTLQIWRMSDLIYRPQDEVLAELE  296 (309)
Q Consensus       237 ~~~~~~~~~v~~~~~~~~~~~~~~s~s~d~~s~~~dg~v~vw~~~~~~~~~~~~~~~~~~  296 (309)
                      ..+...+. -..-.|+|+|..+++             .-.|||++      +.+.+..+.
T Consensus      1261 h~FD~ft~-~~~G~FHP~g~eVII-------------NSEIwD~R------TF~lLh~VP 1300 (1516)
T KOG1832|consen 1261 HRFDQFTD-YGGGGFHPSGNEVII-------------NSEIWDMR------TFKLLHSVP 1300 (1516)
T ss_pred             hhhhhhee-cccccccCCCceEEe-------------echhhhhH------HHHHHhcCc
Confidence            33332221 123458999988774             55699999      666666554

>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]

Probab=99.06  E-value=9.5e-09  Score=80.62  Aligned_cols=229  Identities=11%  Similarity=0.056  Sum_probs=148.3

Q ss_pred             CCCcceEEEEECCCCCEEEEecCCCcEEEEeCCccccccccCCccccccCCCCceeecCCCCCCCCcccCCCCCcCcccc
Q 021657            7 HQDNAEFALAMCPTEPYVLSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGI   86 (309)
Q Consensus         7 H~~~~V~~~~~~~~~~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   86 (309)
                      |.+ .|+-+.- .-.+++++++.||.++.|.-..-                                     .-.+.+..
T Consensus         8 hrd-~i~hv~~-tka~fiiqASlDGh~KFWkKs~i-------------------------------------sGvEfVKh   48 (558)
T KOG0882|consen    8 HRD-VITHVFP-TKAKFIIQASLDGHKKFWKKSRI-------------------------------------SGVEFVKH   48 (558)
T ss_pred             ccc-eeeeEee-ehhheEEeeecchhhhhcCCCCc-------------------------------------cceeehhh
Confidence            666 6655543 35679999999999999986520                                     11233556


Q ss_pred             cccccCCeEEEEEecCCCcEEEEEcC-CCeEEEEEcCCCCcceEEEeeccCCceeEEEeccCCC-CeEE-EEcCCCcEEE
Q 021657           87 YNGHEDTVEDVTFCPSSAQEFCSVGD-DSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDD-NLIL-TGSADNSVRM  163 (309)
Q Consensus        87 ~~~~~~~v~~~~~~~~~~~~l~s~~~-dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~~l~-~~~~dg~i~i  163 (309)
                      +..|-..|.+++.+-++ .++.|.+. |..++++|+..-.......+..-.+.+.. -.+|.+. ..++ +...++.|.+
T Consensus        49 FraHL~~I~sl~~S~dg-~L~~Sv~d~Dhs~KvfDvEn~DminmiKL~~lPg~a~w-v~skGd~~s~IAVs~~~sg~i~V  126 (558)
T KOG0882|consen   49 FRAHLGVILSLAVSYDG-WLFRSVEDPDHSVKVFDVENFDMINMIKLVDLPGFAEW-VTSKGDKISLIAVSLFKSGKIFV  126 (558)
T ss_pred             hHHHHHHHHhhhccccc-eeEeeccCcccceeEEEeeccchhhhcccccCCCceEE-ecCCCCeeeeEEeecccCCCcEE
Confidence            77889999999999988 88888777 99999999987653212222222222211 1233011 1333 3345789999


Q ss_pred             EecCCCCCCCCCCceeeeccCCCCeeEEEEecCCCcEEEEecCCCcEEEEeCCc-ccccccCCCCCcCCCCceeeeecCC
Q 021657          164 FDRRNLTSNGVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEK-VGKKVEQGPRTTNYPAGLFFQHAGH  242 (309)
Q Consensus       164 ~d~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~dg~i~iwd~~~-~~~~~~~~~~~~~~~~~~~~~~~~~  242 (309)
                      +|-+...    .+....-.-|..+|..+.+.+.+.. +++....|.|.-|.... ...+...... ......-++.+.-.
T Consensus       127 vD~~~d~----~q~~~fkklH~sPV~~i~y~qa~Ds-~vSiD~~gmVEyWs~e~~~qfPr~~l~~-~~K~eTdLy~f~K~  200 (558)
T KOG0882|consen  127 VDGFGDF----CQDGYFKKLHFSPVKKIRYNQAGDS-AVSIDISGMVEYWSAEGPFQFPRTNLNF-ELKHETDLYGFPKA  200 (558)
T ss_pred             ECCcCCc----CccceecccccCceEEEEeeccccc-eeeccccceeEeecCCCcccCccccccc-cccccchhhccccc
Confidence            9988632    2344445568899999999999996 55888889999999873 1111110000 00111223344445


Q ss_pred             CcceeeEEEccCCCeEEEEecCCCCCCCCCCeEEEEEccccccCChhhHhHhhh
Q 021657          243 RDKVVDFHWNASDPWTVVSVSDDCDSTGGGGTLQIWRMSDLIYRPQDEVLAELE  296 (309)
Q Consensus       243 ~~~v~~~~~~~~~~~~~~s~s~d~~s~~~dg~v~vw~~~~~~~~~~~~~~~~~~  296 (309)
                      .....++.|+|++..+.        +-+.|..|+++++.      +++.++++.
T Consensus       201 Kt~pts~Efsp~g~qis--------tl~~DrkVR~F~~K------tGklvqeiD  240 (558)
T KOG0882|consen  201 KTEPTSFEFSPDGAQIS--------TLNPDRKVRGFVFK------TGKLVQEID  240 (558)
T ss_pred             ccCccceEEccccCccc--------ccCcccEEEEEEec------cchhhhhhh
Confidence            56778999999988755        44455999999999      677666654

>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=99.05  E-value=1.8e-08  Score=78.02  Aligned_cols=158  Identities=9%  Similarity=0.114  Sum_probs=101.5

Q ss_pred             cccCCCCCcceEEEEECCCCC-EEEEecCCCcEEEEeCCccccccccCCccccccCCCCceeecCCCCCCCCcccCCCCC
Q 021657            2 EILTGHQDNAEFALAMCPTEP-YVLSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPS   80 (309)
Q Consensus         2 ~~l~~H~~~~V~~~~~~~~~~-~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (309)
                      +.|.+|.. .|..++|+|..+ ++..++.+.+|+|.|+++...                                     
T Consensus       187 q~lp~~g~-~IrdlafSp~~~GLl~~asl~nkiki~dlet~~~-------------------------------------  228 (463)
T KOG1645|consen  187 QILPGEGS-FIRDLAFSPFNEGLLGLASLGNKIKIMDLETSCV-------------------------------------  228 (463)
T ss_pred             hcccccch-hhhhhccCccccceeeeeccCceEEEEeccccee-------------------------------------
Confidence            34667777 899999999776 788999999999999985322                                     


Q ss_pred             cCcccccccccCCeEEEEEecCCCcEEEEEcCCCeEEEEEcCCCCcceEEEee-ccCCceeEEEeccC-----CCCeEEE
Q 021657           81 VGPRGIYNGHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPVIKVEK-AHDADLHCVDWNPL-----DDNLILT  154 (309)
Q Consensus        81 ~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~-~~~~~v~~~~~~~~-----~~~~l~~  154 (309)
                         +..+..+ ..+++++|.-+..+++..|..+|.|.+||++..+.+...... -...+|..++.-+.     .+.+++.
T Consensus       229 ---vssy~a~-~~~wSC~wDlde~h~IYaGl~nG~VlvyD~R~~~~~~~e~~a~~t~~pv~~i~~~~~n~~f~~gglLv~  304 (463)
T KOG1645|consen  229 ---VSSYIAY-NQIWSCCWDLDERHVIYAGLQNGMVLVYDMRQPEGPLMELVANVTINPVHKIAPVQPNKIFTSGGLLVF  304 (463)
T ss_pred             ---eeheecc-CCceeeeeccCCcceeEEeccCceEEEEEccCCCchHhhhhhhhccCcceeecccCccccccccceEEe
Confidence               2333445 689999999988899999999999999999977643222111 12334544443220     2344444


Q ss_pred             EcCCCcEEEEecCCCCCCCCCCceeeeccCCCCeeEEEEecCCCcEEEEecC
Q 021657          155 GSADNSVRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAE  206 (309)
Q Consensus       155 ~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~  206 (309)
                      ...+  +.+|++.....  ...++..+. ..+...+++..+-.++++++.-.
T Consensus       305 ~lt~--l~f~ei~~s~~--~~p~vlele-~pG~cismqy~~~snh~l~tyRs  351 (463)
T KOG1645|consen  305 ALTV--LQFYEIVFSAE--CLPCVLELE-PPGICISMQYHGVSNHLLLTYRS  351 (463)
T ss_pred             eehh--hhhhhhhcccc--CCCcccccC-CCcceeeeeecCccceEEEEecC
Confidence            4332  45666554221  022222332 34566677777766777766654

>KOG2041 consensus WD40 repeat protein [General function prediction only]

Probab=99.01  E-value=1.7e-08  Score=83.85  Aligned_cols=123  Identities=16%  Similarity=0.242  Sum_probs=91.6

Q ss_pred             cccCCCCCcceEEEEECCCCCEEEEecCCCcEEEEeCCccccccccCCccccccCCCCceeecCCCCCCCCcccCCCCCc
Q 021657            2 EILTGHQDNAEFALAMCPTEPYVLSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSV   81 (309)
Q Consensus         2 ~~l~~H~~~~V~~~~~~~~~~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (309)
                      |+|.||.+ .|..+.|+.+.+.|-|...+|.|.||-+-++.-...                                   
T Consensus        65 QtLeGH~~-sV~vvTWNe~~QKLTtSDt~GlIiVWmlykgsW~EE-----------------------------------  108 (1189)
T KOG2041|consen   65 QTLEGHNA-SVMVVTWNENNQKLTTSDTSGLIIVWMLYKGSWCEE-----------------------------------  108 (1189)
T ss_pred             hhhccCcc-eEEEEEeccccccccccCCCceEEEEeeecccHHHH-----------------------------------
Confidence            68999999 899999999999999999999999999875421111                                   


Q ss_pred             CcccccccccCCeEEEEEecCCCcEEEEEcCCCeEEEEEcCCCCcceEEEeeccCCceeEEEeccCCCCeEEEEcCCCcE
Q 021657           82 GPRGIYNGHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSV  161 (309)
Q Consensus        82 ~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i  161 (309)
                         ..-....+.|.+++|+.+| ..++....||.|.+=.+...+ ..-+.+++  .....+.|++ +...++.+-..|.+
T Consensus       109 ---MiNnRnKSvV~SmsWn~dG-~kIcIvYeDGavIVGsvdGNR-IwgKeLkg--~~l~hv~ws~-D~~~~Lf~~ange~  180 (1189)
T KOG2041|consen  109 ---MINNRNKSVVVSMSWNLDG-TKICIVYEDGAVIVGSVDGNR-IWGKELKG--QLLAHVLWSE-DLEQALFKKANGET  180 (1189)
T ss_pred             ---HhhCcCccEEEEEEEcCCC-cEEEEEEccCCEEEEeeccce-ecchhcch--heccceeecc-cHHHHHhhhcCCcE
Confidence               1112345679999999999 779999999999887775443 11112222  2344778999 78888888888999


Q ss_pred             EEEecCC
Q 021657          162 RMFDRRN  168 (309)
Q Consensus       162 ~i~d~~~  168 (309)
                      .+||...
T Consensus       181 hlydnqg  187 (1189)
T KOG2041|consen  181 HLYDNQG  187 (1189)
T ss_pred             EEecccc
Confidence            9998653

>PLN02919 haloacid dehalogenase-like hydrolase family protein

Probab=99.00  E-value=1.5e-07  Score=86.03  Aligned_cols=171  Identities=13%  Similarity=0.197  Sum_probs=110.2

Q ss_pred             EEEEECC-CCCEEEEecCCCcEEEEeCCccccccccCCccccccCCCCceeecCCCCCCCCcccCCCCCcCccccccccc
Q 021657           13 FALAMCP-TEPYVLSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHE   91 (309)
Q Consensus        13 ~~~~~~~-~~~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   91 (309)
                      +.++|+| ++.++++.+.++.|++||..++......         +.            +.....+....     ....-
T Consensus       686 ~gVa~dp~~g~LyVad~~~~~I~v~d~~~g~v~~~~---------G~------------G~~~~~~g~~~-----~~~~~  739 (1057)
T PLN02919        686 WDVCFEPVNEKVYIAMAGQHQIWEYNISDGVTRVFS---------GD------------GYERNLNGSSG-----TSTSF  739 (1057)
T ss_pred             eEEEEecCCCeEEEEECCCCeEEEEECCCCeEEEEe---------cC------------CccccCCCCcc-----ccccc
Confidence            5799999 5667778888999999998764221100         00            00000000000     00111


Q ss_pred             CCeEEEEEecCCCcEEEEEcCCCeEEEEEcCCCCcceEE-----------Eeec--------cCCceeEEEeccCCCCeE
Q 021657           92 DTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPVIK-----------VEKA--------HDADLHCVDWNPLDDNLI  152 (309)
Q Consensus        92 ~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~-----------~~~~--------~~~~v~~~~~~~~~~~~l  152 (309)
                      .....|+++|++..++++-+.++.|++||+.++......           .+..        .-.....+++++ +++++
T Consensus       740 ~~P~GIavspdG~~LYVADs~n~~Irv~D~~tg~~~~~~gg~~~~~~~l~~fG~~dG~g~~~~l~~P~Gvavd~-dG~LY  818 (1057)
T PLN02919        740 AQPSGISLSPDLKELYIADSESSSIRALDLKTGGSRLLAGGDPTFSDNLFKFGDHDGVGSEVLLQHPLGVLCAK-DGQIY  818 (1057)
T ss_pred             cCccEEEEeCCCCEEEEEECCCCeEEEEECCCCcEEEEEecccccCcccccccCCCCchhhhhccCCceeeEeC-CCcEE
Confidence            345789999998567778888899999999876521110           0000        011246889999 88999


Q ss_pred             EEEcCCCcEEEEecCCCCCCCCCCceeeecc--------------CCCCeeEEEEecCCCcEEEEecCCCcEEEEeCCcc
Q 021657          153 LTGSADNSVRMFDRRNLTSNGVGSPINKFEG--------------HSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKV  218 (309)
Q Consensus       153 ~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~--------------~~~~v~~~~~~~~~~~l~~~~~~dg~i~iwd~~~~  218 (309)
                      ++-..++.|++||..+      +... .+.+              .-.....|+++++|+ ++++-+.++.|++||+++.
T Consensus       819 VADs~N~rIrviD~~t------g~v~-tiaG~G~~G~~dG~~~~a~l~~P~GIavd~dG~-lyVaDt~Nn~Irvid~~~~  890 (1057)
T PLN02919        819 VADSYNHKIKKLDPAT------KRVT-TLAGTGKAGFKDGKALKAQLSEPAGLALGENGR-LFVADTNNSLIRYLDLNKG  890 (1057)
T ss_pred             EEECCCCEEEEEECCC------CeEE-EEeccCCcCCCCCcccccccCCceEEEEeCCCC-EEEEECCCCEEEEEECCCC
Confidence            9988999999999876      3322 2211              112467899999998 6778889999999999773

>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=99.00  E-value=1.7e-09  Score=89.77  Aligned_cols=164  Identities=22%  Similarity=0.377  Sum_probs=123.2

Q ss_pred             CeEEEEEecC--CCcEEEEEcCCCeEEEEEcCCCCc-ceEEEeeccCCceeEEEeccCCCCeEEEEcCCCcEEEEecCCC
Q 021657           93 TVEDVTFCPS--SAQEFCSVGDDSCLILWDARVGTS-PVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNL  169 (309)
Q Consensus        93 ~v~~~~~~~~--~~~~l~s~~~dg~i~iwd~~~~~~-~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~  169 (309)
                      .|-.+.|+|.  .+..+++.+. ..-.+|++..... .+...+.+|...|+.+-|+|+....+++++.|-.+..||++.+
T Consensus        69 ~vad~qws~h~a~~~wiVsts~-qkaiiwnlA~ss~~aIef~lhghsraitd~n~~~q~pdVlatcsvdt~vh~wd~rSp  147 (1081)
T KOG0309|consen   69 QVADVQWSPHPAKPYWIVSTSN-QKAIIWNLAKSSSNAIEFVLHGHSRAITDINFNPQHPDVLATCSVDTYVHAWDMRSP  147 (1081)
T ss_pred             hhcceecccCCCCceeEEecCc-chhhhhhhhcCCccceEEEEecCccceeccccCCCCCcceeeccccccceeeeccCC
Confidence            4667778764  2344555544 4456898864432 2555677899999999999988999999999999999999986


Q ss_pred             CCCCCCCceeeeccCCCCeeEEEEecCCCcEEEEecCCCcEEEEeCCcccccccCCCCCcCCCCceeeeecCCCcceeeE
Q 021657          170 TSNGVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKVVDF  249 (309)
Q Consensus       170 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~  249 (309)
                           ..++..+..-...-..++|+.....++ +.+..+.|.+||++..+              .++..+++|...|+.+
T Consensus       148 -----~~p~ys~~~w~s~asqVkwnyk~p~vl-asshg~~i~vwd~r~gs--------------~pl~s~K~~vs~vn~~  207 (1081)
T KOG0309|consen  148 -----HRPFYSTSSWRSAASQVKWNYKDPNVL-ASSHGNDIFVWDLRKGS--------------TPLCSLKGHVSSVNSI  207 (1081)
T ss_pred             -----CcceeeeecccccCceeeecccCcchh-hhccCCceEEEeccCCC--------------cceEEecccceeeehH
Confidence                 567776666566678899998877766 55567789999999843              3456778899999999


Q ss_pred             EEccCCCeEEEEecCCCCCCCCCCeEEEEEccccc
Q 021657          250 HWNASDPWTVVSVSDDCDSTGGGGTLQIWRMSDLI  284 (309)
Q Consensus       250 ~~~~~~~~~~~s~s~d~~s~~~dg~v~vw~~~~~~  284 (309)
                      +|..-....+.       +.+.|++|++||.....
T Consensus       208 ~fnr~~~s~~~-------s~~~d~tvkfw~y~kSt  235 (1081)
T KOG0309|consen  208 DFNRFKYSEIM-------SSSNDGTVKFWDYSKST  235 (1081)
T ss_pred             HHhhhhhhhhc-------ccCCCCceeeecccccc
Confidence            99875444455       55555999999998543

>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]

Probab=98.99  E-value=2.7e-07  Score=73.29  Aligned_cols=117  Identities=14%  Similarity=0.199  Sum_probs=95.3

Q ss_pred             cccCCeEEEEEecCCCcEEEEEcCCC-eEEEEEcCCCCcceEEEeeccCCceeEEEeccCCCCeEEEEcCCCcEEEEecC
Q 021657           89 GHEDTVEDVTFCPSSAQEFCSVGDDS-CLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRR  167 (309)
Q Consensus        89 ~~~~~v~~~~~~~~~~~~l~s~~~dg-~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~  167 (309)
                      +|.+.|.-..+..++ .-++.|..|| .+-|+|.++++   .+.+...-+.|.++..+| +|++++++.....|.++|+.
T Consensus       357 ~~~~~VrY~r~~~~~-e~~vigt~dgD~l~iyd~~~~e---~kr~e~~lg~I~av~vs~-dGK~~vvaNdr~el~vidid  431 (668)
T COG4946         357 GKKGGVRYRRIQVDP-EGDVIGTNDGDKLGIYDKDGGE---VKRIEKDLGNIEAVKVSP-DGKKVVVANDRFELWVIDID  431 (668)
T ss_pred             CCCCceEEEEEccCC-cceEEeccCCceEEEEecCCce---EEEeeCCccceEEEEEcC-CCcEEEEEcCceEEEEEEec
Confidence            466678877777776 4688899999 89999998887   555566778899999999 99999999999999999999


Q ss_pred             CCCCCCCCCceeeeccCCCCeeEEEEecCCCcEEEEecCC----CcEEEEeCCc
Q 021657          168 NLTSNGVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAED----GLLNIWDYEK  217 (309)
Q Consensus       168 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~d----g~i~iwd~~~  217 (309)
                      +      +.....-+...+-|+.+.|+|++++ +|-+--+    ..|++||+..
T Consensus       432 n------gnv~~idkS~~~lItdf~~~~nsr~-iAYafP~gy~tq~Iklydm~~  478 (668)
T COG4946         432 N------GNVRLIDKSEYGLITDFDWHPNSRW-IAYAFPEGYYTQSIKLYDMDG  478 (668)
T ss_pred             C------CCeeEecccccceeEEEEEcCCcee-EEEecCcceeeeeEEEEecCC
Confidence            8      6655555556778999999999997 5555444    4689999987

>KOG4532 consensus WD40-like repeat containing protein [General function prediction only]

Probab=98.99  E-value=6e-08  Score=71.27  Aligned_cols=176  Identities=13%  Similarity=0.100  Sum_probs=108.4

Q ss_pred             cEEEEEcCCCeEEEEEcCCCCcceEEEeeccCCceeEEEeccCCCCeEEEEcCCCcEEEEecCCCCCCCCCCceeeeccC
Q 021657          105 QEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGH  184 (309)
Q Consensus       105 ~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~  184 (309)
                      .+|+.|+..|...+|...+.+. .......|...|+-+.=.-+...-+..++.|.++++.++.-      +.........
T Consensus        85 ~~la~gG~~g~fd~~~~~tn~~-h~~~cd~snn~v~~~~r~cd~~~~~~i~sndht~k~~~~~~------~s~~~~~h~~  157 (344)
T KOG4532|consen   85 VTLADGGASGQFDLFACNTNDG-HLYQCDVSNNDVTLVKRYCDLKFPLNIASNDHTGKTMVVSG------DSNKFAVHNQ  157 (344)
T ss_pred             cEEEeccccceeeeecccCccc-ceeeecccccchhhhhhhcccccceeeccCCcceeEEEEec------Ccccceeecc
Confidence            4689999999999999986652 23333334443322211000233456677888888888775      2222222111


Q ss_pred             CCCeeEEEEecCCCcEEEEecCCCcEEEEeCCcccccccCCCCCcCCCCceeeeecCCCcceeeEEEccCCCeEEEEecC
Q 021657          185 SAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKVVDFHWNASDPWTVVSVSD  264 (309)
Q Consensus       185 ~~~v~~~~~~~~~~~l~~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~s~  264 (309)
                      .-.++++++++|+++ +++.++...|-.|.+...++....            ......++.--+..|+..+. .+|+++.
T Consensus       158 ~~~~ns~~~snd~~~-~~~Vgds~~Vf~y~id~~sey~~~------------~~~a~t~D~gF~~S~s~~~~-~FAv~~Q  223 (344)
T KOG4532|consen  158 NLTQNSLHYSNDPSW-GSSVGDSRRVFRYAIDDESEYIEN------------IYEAPTSDHGFYNSFSENDL-QFAVVFQ  223 (344)
T ss_pred             ccceeeeEEcCCCce-EEEecCCCcceEEEeCCccceeee------------eEecccCCCceeeeeccCcc-eEEEEec
Confidence            234889999999996 567788889999999885443221            11222333446678888554 5665555


Q ss_pred             CCCCCCCCCeEEEEEccccccCChhhHhHhhhcccceEEEeeeCC
Q 021657          265 DCDSTGGGGTLQIWRMSDLIYRPQDEVLAELEKFKAHVISCTSKP  309 (309)
Q Consensus       265 d~~s~~~dg~v~vw~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~P  309 (309)
                      |       |++.|||++.+.. +....-.+-..|.+.+..|.|+|
T Consensus       224 d-------g~~~I~DVR~~~t-pm~~~sstrp~hnGa~R~c~Fsl  260 (344)
T KOG4532|consen  224 D-------GTCAIYDVRNMAT-PMAEISSTRPHHNGAFRVCRFSL  260 (344)
T ss_pred             C-------CcEEEEEeccccc-chhhhcccCCCCCCceEEEEecC
Confidence            5       9999999996421 11122233346889999999986

>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.97  E-value=1.8e-07  Score=79.42  Aligned_cols=215  Identities=13%  Similarity=0.095  Sum_probs=139.0

Q ss_pred             EECCCCCEEEEecCCCcEEEEeCCccccccccCCccccccCCCCceeecCCCCCCCCcccCCCCCcCcccccccccCCeE
Q 021657           16 AMCPTEPYVLSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVE   95 (309)
Q Consensus        16 ~~~~~~~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~   95 (309)
                      +|++.+..++.|+.+|.|.+.+-.                                         .+..+.++.+...|.
T Consensus        30 c~~s~~~~vvigt~~G~V~~Ln~s-----------------------------------------~~~~~~fqa~~~siv   68 (933)
T KOG2114|consen   30 CCSSSTGSVVIGTADGRVVILNSS-----------------------------------------FQLIRGFQAYEQSIV   68 (933)
T ss_pred             EEcCCCceEEEeeccccEEEeccc-----------------------------------------ceeeehheecchhhh
Confidence            567888899999999999887743                                         222344555655533


Q ss_pred             EEEEecCCCcEEEEEcCCC-----eEEEEEcCCCCc---ceEE---Eeec-----cCCceeEEEeccCCCCeEEEEcCCC
Q 021657           96 DVTFCPSSAQEFCSVGDDS-----CLILWDARVGTS---PVIK---VEKA-----HDADLHCVDWNPLDDNLILTGSADN  159 (309)
Q Consensus        96 ~~~~~~~~~~~l~s~~~dg-----~i~iwd~~~~~~---~~~~---~~~~-----~~~~v~~~~~~~~~~~~l~~~~~dg  159 (309)
                      ..-+.-++..+|++-+.|+     .|+||+++..+.   |...   ....     ...++.+++.+. +-..+|+|..+|
T Consensus        69 ~~L~~~~~~~~L~sv~Ed~~~np~llkiw~lek~~~n~sP~c~~~~ri~~~~np~~~~p~s~l~Vs~-~l~~Iv~Gf~nG  147 (933)
T KOG2114|consen   69 QFLYILNKQNFLFSVGEDEQGNPVLLKIWDLEKVDKNNSPQCLYEHRIFTIKNPTNPSPASSLAVSE-DLKTIVCGFTNG  147 (933)
T ss_pred             hHhhcccCceEEEEEeecCCCCceEEEEecccccCCCCCcceeeeeeeeccCCCCCCCcceEEEEEc-cccEEEEEecCc
Confidence            3333344436777777664     589999975421   1111   2222     356788999998 889999999999


Q ss_pred             cEEEEecCCCCCCCCCCceeeeccCCCCeeEEEEecCCCcEEEEecCCCcEEEEeCCcccccccCCCCCcCCCCceeeee
Q 021657          160 SVRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQH  239 (309)
Q Consensus       160 ~i~i~d~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~  239 (309)
                      .|..+.-.-....  +....-....+.+|+.+++..++.-++.+++ -..|.+|.+....              .....+
T Consensus       148 ~V~~~~GDi~RDr--gsr~~~~~~~~~pITgL~~~~d~~s~lFv~T-t~~V~~y~l~gr~--------------p~~~~l  210 (933)
T KOG2114|consen  148 LVICYKGDILRDR--GSRQDYSHRGKEPITGLALRSDGKSVLFVAT-TEQVMLYSLSGRT--------------PSLKVL  210 (933)
T ss_pred             EEEEEcCcchhcc--ccceeeeccCCCCceeeEEecCCceeEEEEe-cceeEEEEecCCC--------------cceeee
Confidence            9998853321111  2222223345679999999999986332333 3579999998521              123446


Q ss_pred             cCCCcceeeEEEccCCCeEEEEecCCCCCCCCCCeEEEEEccccccCChhhHhHhhh-cccceEEE
Q 021657          240 AGHRDKVVDFHWNASDPWTVVSVSDDCDSTGGGGTLQIWRMSDLIYRPQDEVLAELE-KFKAHVIS  304 (309)
Q Consensus       240 ~~~~~~v~~~~~~~~~~~~~~s~s~d~~s~~~dg~v~vw~~~~~~~~~~~~~~~~~~-~h~~~v~~  304 (309)
                      ..|...+.+..+++..+.++++++         ..|.+|+..      ...+-.++. +|+..+..
T Consensus       211 d~~G~~lnCss~~~~t~qfIca~~---------e~l~fY~sd------~~~~cfaf~~g~kk~~~~  261 (933)
T KOG2114|consen  211 DNNGISLNCSSFSDGTYQFICAGS---------EFLYFYDSD------GRGPCFAFEVGEKKEMLV  261 (933)
T ss_pred             ccCCccceeeecCCCCccEEEecC---------ceEEEEcCC------CcceeeeecCCCeEEEEE
Confidence            778889999999986665666555         489999998      344445555 66554433

>KOG4190 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.97  E-value=1.6e-09  Score=87.30  Aligned_cols=171  Identities=15%  Similarity=0.238  Sum_probs=117.8

Q ss_pred             ccccccccCCeEEEEEecCCCcEEEEEcCCCeEEEEEcCCC-----CcceEEEeeccCCceeEEEeccCCCCeEEEEcCC
Q 021657           84 RGIYNGHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVG-----TSPVIKVEKAHDADLHCVDWNPLDDNLILTGSAD  158 (309)
Q Consensus        84 ~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~-----~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d  158 (309)
                      +..+.+|+..|..+.--.+. +-|++++.|.+|++|.++..     ...+..+...|+.+|..+.|-. +.+++++  .|
T Consensus       728 L~nf~GH~~~iRai~AidNE-NSFiSASkDKTVKLWSik~EgD~~~tsaCQfTY~aHkk~i~~igfL~-~lr~i~S--cD  803 (1034)
T KOG4190|consen  728 LCNFTGHQEKIRAIAAIDNE-NSFISASKDKTVKLWSIKPEGDEIGTSACQFTYQAHKKPIHDIGFLA-DLRSIAS--CD  803 (1034)
T ss_pred             eecccCcHHHhHHHHhcccc-cceeeccCCceEEEEEeccccCccccceeeeEhhhccCcccceeeee-ccceeee--cc
Confidence            35577899988888755544 67999999999999998642     1225667789999999999988 6667665  58


Q ss_pred             CcEEEEecCCCCCCCCCCceeeecc--CCCCeeEEEEec--CCCcEEEEecCCCcEEEEeCCcccccccCCCCCcCCCCc
Q 021657          159 NSVRMFDRRNLTSNGVGSPINKFEG--HSAAVLCVQWSP--DKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAG  234 (309)
Q Consensus       159 g~i~i~d~~~~~~~~~~~~~~~~~~--~~~~v~~~~~~~--~~~~l~~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~  234 (309)
                      |.|++||.--      ++++..+..  ..+.+..+..-+  +...++|.++...+|+++|.+..+..-+          -
T Consensus       804 ~giHlWDPFi------gr~Laq~~dapk~~a~~~ikcl~nv~~~iliAgcsaeSTVKl~DaRsce~~~E----------~  867 (1034)
T KOG4190|consen  804 GGIHLWDPFI------GRLLAQMEDAPKEGAGGNIKCLENVDRHILIAGCSAESTVKLFDARSCEWTCE----------L  867 (1034)
T ss_pred             Ccceeecccc------cchhHhhhcCcccCCCceeEecccCcchheeeeccchhhheeeecccccceee----------E
Confidence            8999999876      666654421  223333344333  3444455557889999999987322110          1


Q ss_pred             eeeeecCCCcceeeEEEccCCCeEEEEecCCCCCCCCCCeEEEEEccc
Q 021657          235 LFFQHAGHRDKVVDFHWNASDPWTVVSVSDDCDSTGGGGTLQIWRMSD  282 (309)
Q Consensus       235 ~~~~~~~~~~~v~~~~~~~~~~~~~~s~s~d~~s~~~dg~v~vw~~~~  282 (309)
                      .+....+.+.-+.+++..|.|+++.+.-|        .|+|.+.|.++
T Consensus       868 kVcna~~Pna~~R~iaVa~~GN~lAa~LS--------nGci~~LDaR~  907 (1034)
T KOG4190|consen  868 KVCNAPGPNALTRAIAVADKGNKLAAALS--------NGCIAILDARN  907 (1034)
T ss_pred             EeccCCCCchheeEEEeccCcchhhHHhc--------CCcEEEEecCC
Confidence            12223445567889999999998874444        48899999884

>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide

Probab=98.97  E-value=1.6e-09  Score=56.93  Aligned_cols=38  Identities=18%  Similarity=0.506  Sum_probs=35.0

Q ss_pred             CcccccccccCCeEEEEEecCCCcEEEEEcCCCeEEEEE
Q 021657           82 GPRGIYNGHEDTVEDVTFCPSSAQEFCSVGDDSCLILWD  120 (309)
Q Consensus        82 ~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd  120 (309)
                      +++..+.+|.+.|++|+|+|++ .+|++++.|+.|++||
T Consensus         2 ~~~~~~~~h~~~i~~i~~~~~~-~~~~s~~~D~~i~vwd   39 (39)
T PF00400_consen    2 KCVRTFRGHSSSINSIAWSPDG-NFLASGSSDGTIRVWD   39 (39)
T ss_dssp             EEEEEEESSSSSEEEEEEETTS-SEEEEEETTSEEEEEE
T ss_pred             eEEEEEcCCCCcEEEEEEeccc-ccceeeCCCCEEEEEC
Confidence            3567889999999999999997 8999999999999997

WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....

>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]

Probab=98.96  E-value=2.8e-08  Score=74.54  Aligned_cols=205  Identities=17%  Similarity=0.229  Sum_probs=117.5

Q ss_pred             ceEEEEECCCCC--EEEEecCCCcEEEEeCCccccccccCCccccccCCCCceeecCCCCCCCCcccCCC------CCcC
Q 021657           11 AEFALAMCPTEP--YVLSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADG------PSVG   82 (309)
Q Consensus        11 ~V~~~~~~~~~~--~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~   82 (309)
                      .|..+.|-.++.  .++..+.|++|++|.+..........................    .-..+.+-..      ....
T Consensus        87 Kin~I~w~~~t~r~hFLlstNdktiKlWKiyeknlk~va~nnls~~~~~~~~g~~~----s~~~l~lprls~hd~iiaa~  162 (460)
T COG5170          87 KINAIEWFDDTGRNHFLLSTNDKTIKLWKIYEKNLKVVAENNLSDSFHSPMGGPLT----STKELLLPRLSEHDEIIAAK  162 (460)
T ss_pred             HhhheeeecCCCcceEEEecCCceeeeeeeecccchhhhccccccccccccCCCcC----CHHHhhcccccccceEEEec
Confidence            367788876543  477778899999999876521111111000000000000000    0000000000      0111


Q ss_pred             ccccc-ccccCCeEEEEEecCCCcEEEEEcCCCeEEEEEcCCCCcc-eEEEeeccC-----CceeEEEeccCCCCeEEEE
Q 021657           83 PRGIY-NGHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSP-VIKVEKAHD-----ADLHCVDWNPLDDNLILTG  155 (309)
Q Consensus        83 ~~~~~-~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~-~~~~~~~~~-----~~v~~~~~~~~~~~~l~~~  155 (309)
                      +.+.. ..|.-.|+++.|+.+. ..+++ ..|-.|.+|++...... .+...+.|.     .-|++..|+|...+.+.-.
T Consensus       163 p~rvyaNaH~yhiNSiS~NsD~-et~lS-aDdLrINLWnl~i~D~sFnIVDiKP~nmeeLteVItSaeFhp~~cn~fmYS  240 (460)
T COG5170         163 PCRVYANAHPYHINSISFNSDK-ETLLS-ADDLRINLWNLEIIDGSFNIVDIKPHNMEELTEVITSAEFHPEMCNVFMYS  240 (460)
T ss_pred             cceeccccceeEeeeeeecCch-heeee-ccceeeeeccccccCCceEEEeccCccHHHHHHHHhhcccCHhHcceEEEe
Confidence            22222 5688889999999886 55555 46788999998754421 122233333     4588999999777888888


Q ss_pred             cCCCcEEEEecCCCCCCCCCCceee----------eccCCCCeeEEEEecCCCcEEEEecCCCcEEEEeCCccccccc
Q 021657          156 SADNSVRMFDRRNLTSNGVGSPINK----------FEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVE  223 (309)
Q Consensus       156 ~~dg~i~i~d~~~~~~~~~~~~~~~----------~~~~~~~v~~~~~~~~~~~l~~~~~~dg~i~iwd~~~~~~~~~  223 (309)
                      +..|.|++-|+|+.........+..          +..-...|..+.|+++|++++ +- .--+++|||++..+.+..
T Consensus       241 sSkG~Ikl~DlRq~alcdn~~klfe~~~D~v~~~ff~eivsSISD~kFs~ngryIl-sR-dyltvkiwDvnm~k~pik  316 (460)
T COG5170         241 SSKGEIKLNDLRQSALCDNSKKLFELTIDGVDVDFFEEIVSSISDFKFSDNGRYIL-SR-DYLTVKIWDVNMAKNPIK  316 (460)
T ss_pred             cCCCcEEehhhhhhhhccCchhhhhhccCcccchhHHHHhhhhcceEEcCCCcEEE-Ee-ccceEEEEecccccCCce
Confidence            8999999999995321100111111          112235678899999999743 44 357899999998655543

>KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]

Probab=98.93  E-value=8.5e-10  Score=90.11  Aligned_cols=207  Identities=17%  Similarity=0.268  Sum_probs=136.9

Q ss_pred             eEEEEECCC--CCEEEEecCCCcEEEEeCCccccccccCCccccccCCCCceeecCCCCCCCCcccCCCCCcCccccccc
Q 021657           12 EFALAMCPT--EPYVLSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNG   89 (309)
Q Consensus        12 V~~~~~~~~--~~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   89 (309)
                      +.|+++.-+  ...++.|..+|.|-+-.++.....                                      ......+
T Consensus        59 ~kcva~~y~~d~cIlavG~atG~I~l~s~r~~hdS--------------------------------------s~E~tp~  100 (783)
T KOG1008|consen   59 VKCVASFYGNDRCILAVGSATGNISLLSVRHPHDS--------------------------------------SAEVTPG  100 (783)
T ss_pred             ceeehhhcCCchhhhhhccccCceEEeecCCcccc--------------------------------------cceeccc
Confidence            567766543  356788888999988877643111                                      1123456


Q ss_pred             ccCCeEEEEEecCCCcEEEEEc----CCCeEEEEEcCCCCcceEE--Eee-ccCCceeEEEeccCCCCeEEEEcCCCcEE
Q 021657           90 HEDTVEDVTFCPSSAQEFCSVG----DDSCLILWDARVGTSPVIK--VEK-AHDADLHCVDWNPLDDNLILTGSADNSVR  162 (309)
Q Consensus        90 ~~~~v~~~~~~~~~~~~l~s~~----~dg~i~iwd~~~~~~~~~~--~~~-~~~~~v~~~~~~~~~~~~l~~~~~dg~i~  162 (309)
                      +..+.++++|++-+...||+|-    .|..+.|||+.+.-..+..  .+. +......+++|.. +.+++.+|.....+.
T Consensus       101 ~ar~Ct~lAwneLDtn~LAagldkhrnds~~~Iwdi~s~ltvPke~~~fs~~~l~gqns~cwlr-d~klvlaGm~sr~~~  179 (783)
T KOG1008|consen  101 YARPCTSLAWNELDTNHLAAGLDKHRNDSSLKIWDINSLLTVPKESPLFSSSTLDGQNSVCWLR-DTKLVLAGMTSRSVH  179 (783)
T ss_pred             ccccccccccccccHHHHHhhhhhhcccCCccceecccccCCCccccccccccccCcccccccc-Ccchhhcccccchhh
Confidence            7889999999998767777764    4678999999876211111  111 2334566899997 889999999999999


Q ss_pred             EEecCCCCCCCCCCceeeeccCCCCeeEEEEec-CCCcEEEEecCCCcEEEEe-CCcccccccCCCCCcCCCCceeeeec
Q 021657          163 MFDRRNLTSNGVGSPINKFEGHSAAVLCVQWSP-DKSSVFGSSAEDGLLNIWD-YEKVGKKVEQGPRTTNYPAGLFFQHA  240 (309)
Q Consensus       163 i~d~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~~dg~i~iwd-~~~~~~~~~~~~~~~~~~~~~~~~~~  240 (309)
                      ++|+|..     ......+  ....+..+.+.| .+.+ + +...||.|.+|| .++...++....+          .-.
T Consensus       180 ifdlRqs-----~~~~~sv--nTk~vqG~tVdp~~~nY-~-cs~~dg~iAiwD~~rnienpl~~i~~----------~~N  240 (783)
T KOG1008|consen  180 IFDLRQS-----LDSVSSV--NTKYVQGITVDPFSPNY-F-CSNSDGDIAIWDTYRNIENPLQIILR----------NEN  240 (783)
T ss_pred             hhhhhhh-----hhhhhhh--hhhhcccceecCCCCCc-e-eccccCceeeccchhhhccHHHHHhh----------CCC
Confidence            9999952     1222222  234566778888 5554 5 455599999999 5543333221100          111


Q ss_pred             CCCcceeeEEEccCCCeEEEEecCCCCCCCCCCeEEEEEccc
Q 021657          241 GHRDKVVDFHWNASDPWTVVSVSDDCDSTGGGGTLQIWRMSD  282 (309)
Q Consensus       241 ~~~~~v~~~~~~~~~~~~~~s~s~d~~s~~~dg~v~vw~~~~  282 (309)
                      .....+..++|+|..+-++++.++|.      ++|+++++..
T Consensus       241 ~~~~~l~~~aycPtrtglla~l~RdS------~tIrlydi~~  276 (783)
T KOG1008|consen  241 KKPKQLFALAYCPTRTGLLAVLSRDS------ITIRLYDICV  276 (783)
T ss_pred             CcccceeeEEeccCCcchhhhhccCc------ceEEEecccc
Confidence            11225899999999988999888884      7899999874

>KOG1912 consensus WD40 repeat protein [General function prediction only]

Probab=98.92  E-value=3.3e-07  Score=77.08  Aligned_cols=215  Identities=16%  Similarity=0.163  Sum_probs=142.4

Q ss_pred             CcccCCCCCcceEEEEECCCC------------CEEEEecCCCcEEEEeCCccccccccCCccccccCCCCceeecCCCC
Q 021657            1 MEILTGHQDNAEFALAMCPTE------------PYVLSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKP   68 (309)
Q Consensus         1 l~~l~~H~~~~V~~~~~~~~~------------~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   68 (309)
                      |+.+.-|.. .|+.+.|.|-.            -+||++...|.|.+||....                           
T Consensus        48 iqsie~h~s-~V~~VrWap~~~p~~llS~~~~~lliAsaD~~GrIil~d~~~~---------------------------   99 (1062)
T KOG1912|consen   48 IQSIELHQS-AVTSVRWAPAPSPRDLLSPSSSQLLIASADISGRIILVDFVLA---------------------------   99 (1062)
T ss_pred             hhccccCcc-ceeEEEeccCCCchhccCccccceeEEeccccCcEEEEEehhh---------------------------
Confidence            466778887 89999998732            25788888999999998743                           


Q ss_pred             CCCCcccCCCCCcCcccccccccCCeEEEEEecC---CCcEEEEEcCCCeEEEEEcCCCCcceEEEeeccCCceeEEEec
Q 021657           69 GDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPS---SAQEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWN  145 (309)
Q Consensus        69 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~---~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~  145 (309)
                                   ..+..+..|..++.+++|-+.   ....|++-....+|.+|+..+|+  ..-..........|+.++
T Consensus       100 -------------s~~~~l~~~~~~~qdl~W~~~rd~Srd~LlaIh~ss~lvLwntdtG~--k~Wk~~ys~~iLs~f~~D  164 (1062)
T KOG1912|consen  100 -------------SVINWLSHSNDSVQDLCWVPARDDSRDVLLAIHGSSTLVLWNTDTGE--KFWKYDYSHEILSCFRVD  164 (1062)
T ss_pred             -------------hhhhhhcCCCcchhheeeeeccCcchheeEEecCCcEEEEEEccCCc--eeeccccCCcceeeeeeC
Confidence                         223345668888999999764   23567777777899999999998  444444556677889999


Q ss_pred             cCCCCeEEEEcCCCcEEEEecCCCCCCC-CCCceeeeccCCC-------------------------CeeEEEEecCCCc
Q 021657          146 PLDDNLILTGSADNSVRMFDRRNLTSNG-VGSPINKFEGHSA-------------------------AVLCVQWSPDKSS  199 (309)
Q Consensus       146 ~~~~~~l~~~~~dg~i~i~d~~~~~~~~-~~~~~~~~~~~~~-------------------------~v~~~~~~~~~~~  199 (309)
                      |.+.+.+..-+..|.+.+.+.-....+. .++..+.-..|..                         ....++|+|.-++
T Consensus       165 Pfd~rh~~~l~s~g~vl~~~~l~~sep~~pgk~~qI~sd~Sdl~~lere~at~ns~ts~~~sa~fity~a~faf~p~~rn  244 (1062)
T KOG1912|consen  165 PFDSRHFCVLGSKGFVLSCKDLGLSEPDVPGKEFQITSDHSDLAHLERETATGNSTTSTPASAYFITYCAQFAFSPHWRN  244 (1062)
T ss_pred             CCCcceEEEEccCceEEEEeccCCCCCCCCceeEEEecCccchhhhhhhhhccccccCCCcchhHHHHHHhhhcChhhhc
Confidence            9998888888888988887754322211 1222211111111                         0124577887766


Q ss_pred             EEEEecCCCcEEEEeCCcccccccCCCCCcCCCCceeeeecCCCcceeeEEEccCC--CeEEEEecCCCCCCCCCCeEEE
Q 021657          200 VFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKVVDFHWNASD--PWTVVSVSDDCDSTGGGGTLQI  277 (309)
Q Consensus       200 l~~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~--~~~~~s~s~d~~s~~~dg~v~v  277 (309)
                      ++ -......+.++|++-               ..++....-..+.+.-+.|-|+.  ..|+        ..-.||.+.+
T Consensus       245 ~l-fi~~prellv~dle~---------------~~~l~vvpier~~akfv~vlP~~~rd~Lf--------clH~nG~lti  300 (1062)
T KOG1912|consen  245 IL-FITFPRELLVFDLEY---------------ECCLAVVPIERGGAKFVDVLPDPRRDALF--------CLHSNGRLTI  300 (1062)
T ss_pred             eE-EEEeccceEEEcchh---------------hceeEEEEeccCCcceeEeccCCCcceEE--------EEecCCeEEE
Confidence            54 334477899999986               33444444444555556666654  4455        3334599999


Q ss_pred             EEccc
Q 021657          278 WRMSD  282 (309)
Q Consensus       278 w~~~~  282 (309)
                      |-.+.
T Consensus       301 rvrk~  305 (1062)
T KOG1912|consen  301 RVRKE  305 (1062)
T ss_pred             EEeec
Confidence            99875

>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.91  E-value=3.2e-07  Score=77.35  Aligned_cols=114  Identities=17%  Similarity=0.301  Sum_probs=80.0

Q ss_pred             ccCCeEEEEEecC----CCcEEEEEcCCCeEEEEEcCCCCcceEEEeeccCCceeEEEeccCCCCeEEEEcCCCcEEEEe
Q 021657           90 HEDTVEDVTFCPS----SAQEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFD  165 (309)
Q Consensus        90 ~~~~v~~~~~~~~----~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d  165 (309)
                      ...++.+++++|+    ..+.+++|+.-| +.++.-+--............++|.++.|   .|+++|=++.+| |++||
T Consensus       111 f~rpiksial~Pd~~~~~sk~fv~GG~ag-lvL~er~wlgnk~~v~l~~~eG~I~~i~W---~g~lIAWand~G-v~vyd  185 (846)
T KOG2066|consen  111 FKRPIKSIALHPDFSRQQSKQFVSGGMAG-LVLSERNWLGNKDSVVLSEGEGPIHSIKW---RGNLIAWANDDG-VKVYD  185 (846)
T ss_pred             cCCcceeEEeccchhhhhhhheeecCcce-EEEehhhhhcCccceeeecCccceEEEEe---cCcEEEEecCCC-cEEEe
Confidence            3568999999997    235799999988 88876443222122345567789999999   678998888777 89999


Q ss_pred             cCCCCCCCCCCceeeeccCCC------CeeEEEEecCCCcEEEEecCCCcEEEEeCCc
Q 021657          166 RRNLTSNGVGSPINKFEGHSA------AVLCVQWSPDKSSVFGSSAEDGLLNIWDYEK  217 (309)
Q Consensus       166 ~~~~~~~~~~~~~~~~~~~~~------~v~~~~~~~~~~~l~~~~~~dg~i~iwd~~~  217 (309)
                      ..+      .+.+..++....      ....+.|.++.+ | +.|= .-+|+|..++.
T Consensus       186 ~~~------~~~l~~i~~p~~~~R~e~fpphl~W~~~~~-L-VIGW-~d~v~i~~I~~  234 (846)
T KOG2066|consen  186 TPT------RQRLTNIPPPSQSVRPELFPPHLHWQDEDR-L-VIGW-GDSVKICSIKK  234 (846)
T ss_pred             ccc------cceeeccCCCCCCCCcccCCCceEecCCCe-E-EEec-CCeEEEEEEec
Confidence            988      555555543322      234688888876 3 3453 45799999883

>KOG1912 consensus WD40 repeat protein [General function prediction only]

Probab=98.90  E-value=1.8e-07  Score=78.59  Aligned_cols=155  Identities=17%  Similarity=0.237  Sum_probs=117.2

Q ss_pred             EEEEECCCCCEEEEecCCCcEEEEeCCccccccccCCccccccCCCCceeecCCCCCCCCcccCCCCCcCcccccccccC
Q 021657           13 FALAMCPTEPYVLSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHED   92 (309)
Q Consensus        13 ~~~~~~~~~~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   92 (309)
                      .++.|+|.| ++|-|+. ..|.|-|..                                        +.+.++.+..|+.
T Consensus        19 ~A~Dw~~~G-LiAygsh-slV~VVDs~----------------------------------------s~q~iqsie~h~s   56 (1062)
T KOG1912|consen   19 NAADWSPSG-LIAYGSH-SLVSVVDSR----------------------------------------SLQLIQSIELHQS   56 (1062)
T ss_pred             cccccCccc-eEEEecC-ceEEEEehh----------------------------------------hhhhhhccccCcc
Confidence            467888877 5666654 466666764                                        4566777888999


Q ss_pred             CeEEEEEecCC-----------CcEEEEEcCCCeEEEEEcCCCCcceEEEeeccCCceeEEEeccC--CC-CeEEEEcCC
Q 021657           93 TVEDVTFCPSS-----------AQEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPL--DD-NLILTGSAD  158 (309)
Q Consensus        93 ~v~~~~~~~~~-----------~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~--~~-~~l~~~~~d  158 (309)
                      .|+.+.|.|..           .-++|++...|.|.+||...+.  .+..+..|.+++..++|-+.  +. ..|++-...
T Consensus        57 ~V~~VrWap~~~p~~llS~~~~~lliAsaD~~GrIil~d~~~~s--~~~~l~~~~~~~qdl~W~~~rd~Srd~LlaIh~s  134 (1062)
T KOG1912|consen   57 AVTSVRWAPAPSPRDLLSPSSSQLLIASADISGRIILVDFVLAS--VINWLSHSNDSVQDLCWVPARDDSRDVLLAIHGS  134 (1062)
T ss_pred             ceeEEEeccCCCchhccCccccceeEEeccccCcEEEEEehhhh--hhhhhcCCCcchhheeeeeccCcchheeEEecCC
Confidence            99999998732           2357888889999999998887  67778888999999999652  22 577777888


Q ss_pred             CcEEEEecCCCCCCCCCCceeeeccCCCCeeEEEEecCCCcEEEEecCCCcEEEEeCCc
Q 021657          159 NSVRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEK  217 (309)
Q Consensus       159 g~i~i~d~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~dg~i~iwd~~~  217 (309)
                      .++.+|+..+      |+.............++.+.|-...-+..-+..|.+.+-+.-.
T Consensus       135 s~lvLwntdt------G~k~Wk~~ys~~iLs~f~~DPfd~rh~~~l~s~g~vl~~~~l~  187 (1062)
T KOG1912|consen  135 STLVLWNTDT------GEKFWKYDYSHEILSCFRVDPFDSRHFCVLGSKGFVLSCKDLG  187 (1062)
T ss_pred             cEEEEEEccC------CceeeccccCCcceeeeeeCCCCcceEEEEccCceEEEEeccC
Confidence            8999999999      8888888877777888999985433344555577777766543

>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]

Probab=98.89  E-value=8.8e-08  Score=81.77  Aligned_cols=155  Identities=13%  Similarity=0.192  Sum_probs=113.8

Q ss_pred             CeEEEEEecCCCcEEEEEcCCCeEEEEEcCCCCcceEEEeeccCCceeEEEeccCCCCeEEEEcC---------CCcEEE
Q 021657           93 TVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSA---------DNSVRM  163 (309)
Q Consensus        93 ~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~---------dg~i~i  163 (309)
                      .|.-|+.  ++ +.+.+|...|+|.+-|.++.+  .++.+.+|.+.|..+..   .|+.|++++.         |..|.|
T Consensus       179 ~v~imR~--Nn-r~lf~G~t~G~V~LrD~~s~~--~iht~~aHs~siSDfDv---~GNlLitCG~S~R~~~l~~D~FvkV  250 (1118)
T KOG1275|consen  179 GVTIMRY--NN-RNLFCGDTRGTVFLRDPNSFE--TIHTFDAHSGSISDFDV---QGNLLITCGYSMRRYNLAMDPFVKV  250 (1118)
T ss_pred             ceEEEEe--cC-cEEEeecccceEEeecCCcCc--eeeeeeccccceeeeec---cCCeEEEeecccccccccccchhhh
Confidence            4555554  33 789999999999999999888  89999999999998877   6788888864         445899


Q ss_pred             EecCCCCCCCCCCceeeeccCCCCeeEEEEecCCCcEEEEecCCCcEEEEeCCcccccccCCCCCcCCCCceeeeecCCC
Q 021657          164 FDRRNLTSNGVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHR  243 (309)
Q Consensus       164 ~d~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  243 (309)
                      ||+|+      .+.+.-+.-+.++ .-+.|.|.-...+++++..|...+-|......+           ..-+.-.....
T Consensus       251 YDLRm------mral~PI~~~~~P-~flrf~Psl~t~~~V~S~sGq~q~vd~~~lsNP-----------~~~~~~v~p~~  312 (1118)
T KOG1275|consen  251 YDLRM------MRALSPIQFPYGP-QFLRFHPSLTTRLAVTSQSGQFQFVDTATLSNP-----------PAGVKMVNPNG  312 (1118)
T ss_pred             hhhhh------hhccCCcccccCc-hhhhhcccccceEEEEecccceeeccccccCCC-----------ccceeEEccCC
Confidence            99999      5555555544444 457888876666788888999999995442222           11222233344


Q ss_pred             cceeeEEEccCCCeEEEEecCCCCCCCCCCeEEEEEcc
Q 021657          244 DKVVDFHWNASDPWTVVSVSDDCDSTGGGGTLQIWRMS  281 (309)
Q Consensus       244 ~~v~~~~~~~~~~~~~~s~s~d~~s~~~dg~v~vw~~~  281 (309)
                      ..+.++.++++++.++        -|..+|.|.+|.-.
T Consensus       313 s~i~~fDiSsn~~ala--------fgd~~g~v~~wa~~  342 (1118)
T KOG1275|consen  313 SGISAFDISSNGDALA--------FGDHEGHVNLWADR  342 (1118)
T ss_pred             CcceeEEecCCCceEE--------EecccCcEeeecCC
Confidence            5699999999988766        45566999999843

>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.89  E-value=1.5e-07  Score=79.29  Aligned_cols=189  Identities=14%  Similarity=0.245  Sum_probs=123.4

Q ss_pred             ceEEEEECCCCCEEEEecCCCcEEEEeCCccccccccCCccccccCCCCceeecCCCCCCCCcccCCCCCcCcccccccc
Q 021657           11 AEFALAMCPTEPYVLSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGH   90 (309)
Q Consensus        11 ~V~~~~~~~~~~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   90 (309)
                      .++|++++  +++|+-|+-+|.|++.+.+..                                         + .....|
T Consensus        41 ~is~~av~--~~~~~~GtH~g~v~~~~~~~~-----------------------------------------~-~~~~~~   76 (846)
T KOG2066|consen   41 AISCCAVH--DKFFALGTHRGAVYLTTCQGN-----------------------------------------P-KTNFDH   76 (846)
T ss_pred             HHHHHHhh--cceeeeccccceEEEEecCCc-----------------------------------------c-cccccc
Confidence            45666664  678999999999999987632                                         1 122234


Q ss_pred             cCCeEEEEEecCCCcEEEEEcCCCeEEEEEcCCCCcceEEEeeccCCceeEEEeccC----CCCeEEEEcCCCcEEEEec
Q 021657           91 EDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPL----DDNLILTGSADNSVRMFDR  166 (309)
Q Consensus        91 ~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~----~~~~l~~~~~dg~i~i~d~  166 (309)
                      ...      ..+| .++++|+.||+|.|-.+-+.+.  ... .....++.+++++|+    ..+.+++|+..| +.++.-
T Consensus        77 s~~------~~~G-ey~asCS~DGkv~I~sl~~~~~--~~~-~df~rpiksial~Pd~~~~~sk~fv~GG~ag-lvL~er  145 (846)
T KOG2066|consen   77 SSS------ILEG-EYVASCSDDGKVVIGSLFTDDE--ITQ-YDFKRPIKSIALHPDFSRQQSKQFVSGGMAG-LVLSER  145 (846)
T ss_pred             ccc------ccCC-ceEEEecCCCcEEEeeccCCcc--cee-EecCCcceeEEeccchhhhhhhheeecCcce-EEEehh
Confidence            333      4556 8899999999999999888773  222 234678999999993    256899999988 777765


Q ss_pred             CCCCCCCCCCceeeeccCCCCeeEEEEecCCCcEEEEecCCCcEEEEeCCcccccccCCCCCcCCCCceeeeecCCCcce
Q 021657          167 RNLTSNGVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKV  246 (309)
Q Consensus       167 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v  246 (309)
                      +-.+    .+.-..+....++|.++.|..+   ++|=++.+| |++||+.. ++.....+.+...+        .....-
T Consensus       146 ~wlg----nk~~v~l~~~eG~I~~i~W~g~---lIAWand~G-v~vyd~~~-~~~l~~i~~p~~~~--------R~e~fp  208 (846)
T KOG2066|consen  146 NWLG----NKDSVVLSEGEGPIHSIKWRGN---LIAWANDDG-VKVYDTPT-RQRLTNIPPPSQSV--------RPELFP  208 (846)
T ss_pred             hhhc----CccceeeecCccceEEEEecCc---EEEEecCCC-cEEEeccc-cceeeccCCCCCCC--------CcccCC
Confidence            5432    1111245666889999999754   677777555 89999987 33333222221100        111223


Q ss_pred             eeEEEccCCCeEEEEecCCCCCCCCCCeEEEEEcc
Q 021657          247 VDFHWNASDPWTVVSVSDDCDSTGGGGTLQIWRMS  281 (309)
Q Consensus       247 ~~~~~~~~~~~~~~s~s~d~~s~~~dg~v~vw~~~  281 (309)
                      ..+.|.++.. +++ |        +.-+|+|..++
T Consensus       209 phl~W~~~~~-LVI-G--------W~d~v~i~~I~  233 (846)
T KOG2066|consen  209 PHLHWQDEDR-LVI-G--------WGDSVKICSIK  233 (846)
T ss_pred             CceEecCCCe-EEE-e--------cCCeEEEEEEe
Confidence            5678887554 332 2        22489999888

>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]

Probab=98.88  E-value=9.6e-07  Score=70.74  Aligned_cols=236  Identities=12%  Similarity=0.122  Sum_probs=133.4

Q ss_pred             ceEEEEECCCCCEEEEecCCCc---------------EEEEeCCccccccccCCccccccCCCCc----eeecCCCCCCC
Q 021657           11 AEFALAMCPTEPYVLSGGKDKS---------------VVLWSIQDHITSSATDPATAKSAGSSGS----IIKQSPKPGDG   71 (309)
Q Consensus        11 ~V~~~~~~~~~~~l~t~~~dg~---------------i~vwd~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~   71 (309)
                      .|.-+.|+|.++||.|=+....               +.|||+.++.....+.........-...    ...........
T Consensus        73 ~V~~~~fSP~~kYL~tw~~~pi~~pe~e~sp~~~~n~~~vwd~~sg~iv~sf~~~~q~~~~Wp~~k~s~~D~y~ARvv~~  152 (561)
T COG5354          73 DVKYLDFSPNEKYLVTWSREPIIEPEIEISPFTSKNNVFVWDIASGMIVFSFNGISQPYLGWPVLKFSIDDKYVARVVGS  152 (561)
T ss_pred             CceecccCcccceeeeeccCCccChhhccCCccccCceeEEeccCceeEeeccccCCcccccceeeeeecchhhhhhccC
Confidence            3789999999999999776554               8999999885555444322220000000    00000011122


Q ss_pred             CcccCCC-CC--cCcccccccccCCeEEEEEecCCC-cEEEE-----EcCCCeEEEEEcCCCCcceEEEeeccCCceeEE
Q 021657           72 NDKAADG-PS--VGPRGIYNGHEDTVEDVTFCPSSA-QEFCS-----VGDDSCLILWDARVGTSPVIKVEKAHDADLHCV  142 (309)
Q Consensus        72 ~~~~~~~-~~--~~~~~~~~~~~~~v~~~~~~~~~~-~~l~s-----~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~  142 (309)
                      .+.++++ ..  ..+.+.+.  ...|....|+|.+. ..|+.     .+.++++++|.+........+.+  ....-..+
T Consensus       153 sl~i~e~t~n~~~~p~~~lr--~~gi~dFsisP~~n~~~la~~tPEk~~kpa~~~i~sIp~~s~l~tk~l--fk~~~~qL  228 (561)
T COG5354         153 SLYIHEITDNIEEHPFKNLR--PVGILDFSISPEGNHDELAYWTPEKLNKPAMVRILSIPKNSVLVTKNL--FKVSGVQL  228 (561)
T ss_pred             eEEEEecCCccccCchhhcc--ccceeeEEecCCCCCceEEEEccccCCCCcEEEEEEccCCCeeeeeee--EeecccEE
Confidence            3333332 11  11122222  34578888888742 22332     45678999999876552222222  22333467


Q ss_pred             EeccCCCCeEEEEc-----------CCCcEEEEecCCCCCCCCCCceeeeccCCCCeeEEEEecCCCcEE-EEecCCCcE
Q 021657          143 DWNPLDDNLILTGS-----------ADNSVRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWSPDKSSVF-GSSAEDGLL  210 (309)
Q Consensus       143 ~~~~~~~~~l~~~~-----------~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-~~~~~dg~i  210 (309)
                      .|.+ .+++++.--           ...++++++++.      .. +.......++|...+|.|.++.+. ++|-.+..+
T Consensus       229 kW~~-~g~~ll~l~~t~~ksnKsyfgesnLyl~~~~e------~~-i~V~~~~~~pVhdf~W~p~S~~F~vi~g~~pa~~  300 (561)
T COG5354         229 KWQV-LGKYLLVLVMTHTKSNKSYFGESNLYLLRITE------RS-IPVEKDLKDPVHDFTWEPLSSRFAVISGYMPASV  300 (561)
T ss_pred             EEec-CCceEEEEEEEeeecccceeccceEEEEeecc------cc-cceeccccccceeeeecccCCceeEEecccccce
Confidence            8888 676554321           224678888875      22 222325688999999999887633 344678899


Q ss_pred             EEEeCCcccccccCCCCCcCCCCceeeeecCCCcceeeEEEccCCCeEEEEecCCCCCCCCCCeEEEEEcc
Q 021657          211 NIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKVVDFHWNASDPWTVVSVSDDCDSTGGGGTLQIWRMS  281 (309)
Q Consensus       211 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~s~d~~s~~~dg~v~vw~~~  281 (309)
                      .++|++..                  ..+....+.=+.+.|+|.+.++++++=+     -.-|.+-+||..
T Consensus       301 s~~~lr~N------------------l~~~~Pe~~rNT~~fsp~~r~il~agF~-----nl~gni~i~~~~  348 (561)
T COG5354         301 SVFDLRGN------------------LRFYFPEQKRNTIFFSPHERYILFAGFD-----NLQGNIEIFDPA  348 (561)
T ss_pred             eecccccc------------------eEEecCCcccccccccCcccEEEEecCC-----ccccceEEeccC
Confidence            99999872                  1223333444566677777766543322     133566777765

>PRK04043 tolB translocation protein TolB; Provisional

Probab=98.86  E-value=9.3e-07  Score=72.87  Aligned_cols=179  Identities=12%  Similarity=0.083  Sum_probs=103.1

Q ss_pred             CCCcccCCCCCcCcccccccccCCeEEEEEecCCCcEEE-EEcC--CCeEEEEEcCCCCcceEEEeeccCCceeEEEecc
Q 021657           70 DGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQEFC-SVGD--DSCLILWDARVGTSPVIKVEKAHDADLHCVDWNP  146 (309)
Q Consensus        70 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~-s~~~--dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~  146 (309)
                      ...+.+.|...........+ . .+....|+|+|...++ +...  +..|.++|+.+++.  . .+....+......|+|
T Consensus       168 ~~~l~~~d~dg~~~~~~~~~-~-~~~~p~wSpDG~~~i~y~s~~~~~~~Iyv~dl~tg~~--~-~lt~~~g~~~~~~~SP  242 (419)
T PRK04043        168 KSNIVLADYTLTYQKVIVKG-G-LNIFPKWANKEQTAFYYTSYGERKPTLYKYNLYTGKK--E-KIASSQGMLVVSDVSK  242 (419)
T ss_pred             cceEEEECCCCCceeEEccC-C-CeEeEEECCCCCcEEEEEEccCCCCEEEEEECCCCcE--E-EEecCCCcEEeeEECC
Confidence            34455545443333222332 3 7788999999954344 3333  46799999988773  2 2223445566788999


Q ss_pred             CCCCeEEE-EcCC--CcEEEEecCCCCCCCCCCceeeeccCCCCeeEEEEecCCCcEEEEecCCCc--EEEEeCCccccc
Q 021657          147 LDDNLILT-GSAD--NSVRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAEDGL--LNIWDYEKVGKK  221 (309)
Q Consensus       147 ~~~~~l~~-~~~d--g~i~i~d~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~dg~--i~iwd~~~~~~~  221 (309)
                       +++.++. .+.+  ..|.++|+..      +. ...+..+........|+|||+.++.+....+.  |.+.|+.. ++.
T Consensus       243 -DG~~la~~~~~~g~~~Iy~~dl~~------g~-~~~LT~~~~~d~~p~~SPDG~~I~F~Sdr~g~~~Iy~~dl~~-g~~  313 (419)
T PRK04043        243 -DGSKLLLTMAPKGQPDIYLYDTNT------KT-LTQITNYPGIDVNGNFVEDDKRIVFVSDRLGYPNIFMKKLNS-GSV  313 (419)
T ss_pred             -CCCEEEEEEccCCCcEEEEEECCC------Cc-EEEcccCCCccCccEECCCCCEEEEEECCCCCceEEEEECCC-CCe
Confidence             8875554 4334  4677888776      43 33444333333456899999987766655554  55556554 111


Q ss_pred             ccCCCCCcCCCCceeeeecCCCcceeeEEEccCCCeEEEEecCCCCCCC---CCCeEEEEEcc
Q 021657          222 VEQGPRTTNYPAGLFFQHAGHRDKVVDFHWNASDPWTVVSVSDDCDSTG---GGGTLQIWRMS  281 (309)
Q Consensus       222 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~s~d~~s~~---~dg~v~vw~~~  281 (309)
                      .           + + ...+.    ....|+|++.+++.+...+  ...   ....|.+.|+.
T Consensus       314 ~-----------r-l-t~~g~----~~~~~SPDG~~Ia~~~~~~--~~~~~~~~~~I~v~d~~  357 (419)
T PRK04043        314 E-----------Q-V-VFHGK----NNSSVSTYKNYIVYSSRET--NNEFGKNTFNLYLISTN  357 (419)
T ss_pred             E-----------e-C-ccCCC----cCceECCCCCEEEEEEcCC--CcccCCCCcEEEEEECC
Confidence            0           0 1 11111    1248999999988776532  111   11467777876

>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation []

Probab=98.81  E-value=9.4e-07  Score=79.47  Aligned_cols=214  Identities=14%  Similarity=0.184  Sum_probs=127.0

Q ss_pred             EEEEECCCCCEEEEecC---C---CcEEEEeCCccccccccCCccccccCCCCceeecCCCCCCCCcccCCCCCcCcccc
Q 021657           13 FALAMCPTEPYVLSGGK---D---KSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGI   86 (309)
Q Consensus        13 ~~~~~~~~~~~l~t~~~---d---g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   86 (309)
                      ..++|-.||.++|+.+.   +   +.+|||+-+.. ..                                        ..
T Consensus       213 ~~ISWRGDG~yFAVss~~~~~~~~R~iRVy~ReG~-L~----------------------------------------st  251 (928)
T PF04762_consen  213 VRISWRGDGEYFAVSSVEPETGSRRVIRVYSREGE-LQ----------------------------------------ST  251 (928)
T ss_pred             eEEEECCCCcEEEEEEEEcCCCceeEEEEECCCce-EE----------------------------------------ec
Confidence            48999999999998764   2   57999986521 11                                        01


Q ss_pred             cccccCCeEEEEEecCCCcEEEEEcC---CCeEEEEEcCCCCcc-eEEEeeccCCceeEEEeccCCCCeEEEEcCCCcEE
Q 021657           87 YNGHEDTVEDVTFCPSSAQEFCSVGD---DSCLILWDARVGTSP-VIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVR  162 (309)
Q Consensus        87 ~~~~~~~v~~~~~~~~~~~~l~s~~~---dg~i~iwd~~~~~~~-~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~  162 (309)
                      -+.-.+--.+++|-|.| +++|+.-.   ...|.+|.-+.-+.. ....+......|..++|++ ++..||.-..|. |.
T Consensus       252 SE~v~gLe~~l~WrPsG-~lIA~~q~~~~~~~VvFfErNGLrhgeF~l~~~~~~~~v~~l~Wn~-ds~iLAv~~~~~-vq  328 (928)
T PF04762_consen  252 SEPVDGLEGALSWRPSG-NLIASSQRLPDRHDVVFFERNGLRHGEFTLRFDPEEEKVIELAWNS-DSEILAVWLEDR-VQ  328 (928)
T ss_pred             cccCCCccCCccCCCCC-CEEEEEEEcCCCcEEEEEecCCcEeeeEecCCCCCCceeeEEEECC-CCCEEEEEecCC-ce
Confidence            11112223467999999 77877664   356777774432211 1111224456899999999 999999977655 99


Q ss_pred             EEecCCCCCCCCCCceeeeccC-CCCeeEEEEecCCCcEEEEecCCCcEEEEeCCcccccc-------------------
Q 021657          163 MFDRRNLTSNGVGSPINKFEGH-SAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKV-------------------  222 (309)
Q Consensus       163 i~d~~~~~~~~~~~~~~~~~~~-~~~v~~~~~~~~~~~l~~~~~~dg~i~iwd~~~~~~~~-------------------  222 (309)
                      +|-..+..    +-..+.+.-. ...+..+.|+|....-|...+.+|.+..+++.-.-...                   
T Consensus       329 LWt~~NYH----WYLKqei~~~~~~~~~~~~Wdpe~p~~L~v~t~~g~~~~~~~~~~v~~s~~~~~~D~g~vaVIDG~~l  404 (928)
T PF04762_consen  329 LWTRSNYH----WYLKQEIRFSSSESVNFVKWDPEKPLRLHVLTSNGQYEIYDFAWDVSRSPGSSPNDNGTVAVIDGNKL  404 (928)
T ss_pred             EEEeeCCE----EEEEEEEEccCCCCCCceEECCCCCCEEEEEecCCcEEEEEEEEEEEecCCCCccCceEEEEEeCCeE
Confidence            99887632    2233333322 23345599999877766677776777665543210000                   


Q ss_pred             cCC-CCCcCCCCceeeeecCCCcceeeEEEccCCCeEEEEecCCCCCCCCCCeEEEEEccc
Q 021657          223 EQG-PRTTNYPAGLFFQHAGHRDKVVDFHWNASDPWTVVSVSDDCDSTGGGGTLQIWRMSD  282 (309)
Q Consensus       223 ~~~-~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~s~d~~s~~~dg~v~vw~~~~  282 (309)
                      ... .+....|+.+....-.-..+|.+++|++++..++ +...       ||.|.+|....
T Consensus       405 llTpf~~a~VPPPMs~~~l~~~~~v~~vaf~~~~~~~a-vl~~-------d~~l~~~~~~~  457 (928)
T PF04762_consen  405 LLTPFRRAVVPPPMSSYELELPSPVNDVAFSPSNSRFA-VLTS-------DGSLSIYEWDL  457 (928)
T ss_pred             EEecccccCCCchHhceEEcCCCCcEEEEEeCCCCeEE-EEEC-------CCCEEEEEecC
Confidence            000 0111112222222222356899999999877644 3333       38999999653

>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function

Probab=98.79  E-value=5.6e-06  Score=63.61  Aligned_cols=204  Identities=14%  Similarity=0.168  Sum_probs=123.4

Q ss_pred             EEEEECC-CCCEEEEecCCCc-EEEEeCCccccccccCCccccccCCCCceeecCCCCCCCCcccCCCCCcCcccccccc
Q 021657           13 FALAMCP-TEPYVLSGGKDKS-VVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGH   90 (309)
Q Consensus        13 ~~~~~~~-~~~~l~t~~~dg~-i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   90 (309)
                      ..++.+| ++..++.+-.-|+ ..+||..++........                                ..-+.|.+|
T Consensus         8 H~~a~~p~~~~avafaRRPG~~~~v~D~~~g~~~~~~~a--------------------------------~~gRHFyGH   55 (305)
T PF07433_consen    8 HGVAAHPTRPEAVAFARRPGTFALVFDCRTGQLLQRLWA--------------------------------PPGRHFYGH   55 (305)
T ss_pred             cceeeCCCCCeEEEEEeCCCcEEEEEEcCCCceeeEEcC--------------------------------CCCCEEecC
Confidence            4678888 5566777777665 67789886533222111                                112344555


Q ss_pred             cCCeEEEEEecCCCcEEEEEc-----CCCeEEEEEcCCCCcceEEEeeccCCceeEEEeccCCCCeEEEEcC--------
Q 021657           91 EDTVEDVTFCPSSAQEFCSVG-----DDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSA--------  157 (309)
Q Consensus        91 ~~~v~~~~~~~~~~~~l~s~~-----~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~--------  157 (309)
                      .      .|+++| .+|++.-     ..|.|-|||... ....+..+..+.-.-..+.+.| ++..|+++..        
T Consensus        56 g------~fs~dG-~~LytTEnd~~~g~G~IgVyd~~~-~~~ri~E~~s~GIGPHel~l~p-DG~tLvVANGGI~Thpd~  126 (305)
T PF07433_consen   56 G------VFSPDG-RLLYTTENDYETGRGVIGVYDAAR-GYRRIGEFPSHGIGPHELLLMP-DGETLVVANGGIETHPDS  126 (305)
T ss_pred             E------EEcCCC-CEEEEeccccCCCcEEEEEEECcC-CcEEEeEecCCCcChhhEEEcC-CCCEEEEEcCCCccCccc
Confidence            3      799999 5555543     358999999983 3235667777777778889999 8877777631        


Q ss_pred             ----------CCcEEEEecCCCCCCCCCCceee--e--ccCCCCeeEEEEecCCCcEEEEecCCCc-------EEEEeCC
Q 021657          158 ----------DNSVRMFDRRNLTSNGVGSPINK--F--EGHSAAVLCVQWSPDKSSVFGSSAEDGL-------LNIWDYE  216 (309)
Q Consensus       158 ----------dg~i~i~d~~~~~~~~~~~~~~~--~--~~~~~~v~~~~~~~~~~~l~~~~~~dg~-------i~iwd~~  216 (309)
                                +-.+.+.|.++      ++.+.+  +  ..|...|..+++.++|. ++...-..|.       +-+++..
T Consensus       127 GR~kLNl~tM~psL~~ld~~s------G~ll~q~~Lp~~~~~lSiRHLa~~~~G~-V~~a~Q~qg~~~~~~PLva~~~~g  199 (305)
T PF07433_consen  127 GRAKLNLDTMQPSLVYLDARS------GALLEQVELPPDLHQLSIRHLAVDGDGT-VAFAMQYQGDPGDAPPLVALHRRG  199 (305)
T ss_pred             CceecChhhcCCceEEEecCC------CceeeeeecCccccccceeeEEecCCCc-EEEEEecCCCCCccCCeEEEEcCC
Confidence                      11233344444      666655  3  33667899999999987 3323222221       2222222


Q ss_pred             cccccccCCCCCcCCCCceeeeecCCCcceeeEEEccCCCeEEEEecCCCCCCCCCCeEEEEEcc
Q 021657          217 KVGKKVEQGPRTTNYPAGLFFQHAGHRDKVVDFHWNASDPWTVVSVSDDCDSTGGGGTLQIWRMS  281 (309)
Q Consensus       217 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~s~d~~s~~~dg~v~vw~~~  281 (309)
                      .   .......       .......-...+-+|++++++..+++|+=.-       +.+.+||..
T Consensus       200 ~---~~~~~~~-------p~~~~~~l~~Y~gSIa~~~~g~~ia~tsPrG-------g~~~~~d~~  247 (305)
T PF07433_consen  200 G---ALRLLPA-------PEEQWRRLNGYIGSIAADRDGRLIAVTSPRG-------GRVAVWDAA  247 (305)
T ss_pred             C---cceeccC-------ChHHHHhhCCceEEEEEeCCCCEEEEECCCC-------CEEEEEECC
Confidence            2   0100000       0001123456899999999999888866555       999999998

>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=98.77  E-value=8.1e-08  Score=74.47  Aligned_cols=134  Identities=13%  Similarity=0.167  Sum_probs=96.7

Q ss_pred             cccCCCCCcCcccccccccCCeEEEEEecCCCcEEEEEcCCCeEEEEEcCCCCcceEEEeeccCCceeEEEeccCCCCeE
Q 021657           73 DKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLI  152 (309)
Q Consensus        73 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l  152 (309)
                      ++..+..+.+....+.++...|.+++|+|....++..++.+..|+|.|+++..  ....+..+ ..+++++|+-++.+++
T Consensus       175 v~~l~~~~fkssq~lp~~g~~IrdlafSp~~~GLl~~asl~nkiki~dlet~~--~vssy~a~-~~~wSC~wDlde~h~I  251 (463)
T KOG1645|consen  175 VQKLESHDFKSSQILPGEGSFIRDLAFSPFNEGLLGLASLGNKIKIMDLETSC--VVSSYIAY-NQIWSCCWDLDERHVI  251 (463)
T ss_pred             eEEeccCCcchhhcccccchhhhhhccCccccceeeeeccCceEEEEecccce--eeeheecc-CCceeeeeccCCccee
Confidence            44455556666777888999999999999885588899999999999999887  56666666 7899999998778899


Q ss_pred             EEEcCCCcEEEEecCCCCCCCCCCceeeecc--CCCCeeEEEE------ecCCCcEEEEecCCCcEEEEeCCc
Q 021657          153 LTGSADNSVRMFDRRNLTSNGVGSPINKFEG--HSAAVLCVQW------SPDKSSVFGSSAEDGLLNIWDYEK  217 (309)
Q Consensus       153 ~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~--~~~~v~~~~~------~~~~~~l~~~~~~dg~i~iwd~~~  217 (309)
                      .+|...|.|.|||+|.+     ..++..+.+  ...+|..++.      .+.|. +++....+  +..|++..
T Consensus       252 YaGl~nG~VlvyD~R~~-----~~~~~e~~a~~t~~pv~~i~~~~~n~~f~~gg-lLv~~lt~--l~f~ei~~  316 (463)
T KOG1645|consen  252 YAGLQNGMVLVYDMRQP-----EGPLMELVANVTINPVHKIAPVQPNKIFTSGG-LLVFALTV--LQFYEIVF  316 (463)
T ss_pred             EEeccCceEEEEEccCC-----CchHhhhhhhhccCcceeecccCccccccccc-eEEeeehh--hhhhhhhc
Confidence            99999999999999985     334444433  2234433332      23344 44344332  45676654

>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats

Probab=98.75  E-value=9.3e-06  Score=66.74  Aligned_cols=151  Identities=15%  Similarity=0.275  Sum_probs=95.2

Q ss_pred             EEEEEecCCCcEEEEEc----CCCe----EEEEEcCCCCcceE-EEeeccCCceeEEEeccCCCCeEEEEcCCCcEEEEe
Q 021657           95 EDVTFCPSSAQEFCSVG----DDSC----LILWDARVGTSPVI-KVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFD  165 (309)
Q Consensus        95 ~~~~~~~~~~~~l~s~~----~dg~----i~iwd~~~~~~~~~-~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d  165 (309)
                      .++.|+-..++.+.+..    .+|.    -++|++...+.... ......+..+.+++++| +...++.|+.||.|.+||
T Consensus       209 l~~~Fs~~~~~qi~tVE~s~s~~g~~~~d~ciYE~~r~klqrvsvtsipL~s~v~~ca~sp-~E~kLvlGC~DgSiiLyD  287 (545)
T PF11768_consen  209 LDVEFSLNQPYQIHTVEQSISVKGEPSADSCIYECSRNKLQRVSVTSIPLPSQVICCARSP-SEDKLVLGCEDGSIILYD  287 (545)
T ss_pred             EEEEccCCCCcEEEEEEEecCCCCCceeEEEEEEeecCceeEEEEEEEecCCcceEEecCc-ccceEEEEecCCeEEEEE
Confidence            46677654434454432    2333    34666655442211 12235678899999999 999999999999999999


Q ss_pred             cCCCCCCCCCCceeeeccCCCCeeEEEEecCCCcEEEEecCCCcEEEEeCCcccccccCCCCC-cCCCCceeeeecCCCc
Q 021657          166 RRNLTSNGVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRT-TNYPAGLFFQHAGHRD  244 (309)
Q Consensus       166 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~dg~i~iwd~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~  244 (309)
                      ...      +  +..+....-.++.++|+|+|. ++++|+..|.+.+||+.-..-..+..... .+.+.-.+..+..+..
T Consensus       288 ~~~------~--~t~~~ka~~~P~~iaWHp~ga-i~~V~s~qGelQ~FD~ALspi~~qLlsEd~~P~~~L~Ls~yf~~~~  358 (545)
T PF11768_consen  288 TTR------G--VTLLAKAEFIPTLIAWHPDGA-IFVVGSEQGELQCFDMALSPIKMQLLSEDATPKSTLQLSKYFRVSS  358 (545)
T ss_pred             cCC------C--eeeeeeecccceEEEEcCCCc-EEEEEcCCceEEEEEeecCccceeeccccCCCccEEeeehhccCcc
Confidence            876      2  222333445678999999999 56799999999999997633222221111 1111112223334566


Q ss_pred             ceeeEEEccCC
Q 021657          245 KVVDFHWNASD  255 (309)
Q Consensus       245 ~v~~~~~~~~~  255 (309)
                      .+..+.|.+..
T Consensus       359 ~L~~iqW~~~~  369 (545)
T PF11768_consen  359 SLVHIQWAPAP  369 (545)
T ss_pred             hhheeEeccCC
Confidence            77888898643

>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain

Probab=98.74  E-value=7.8e-06  Score=65.01  Aligned_cols=187  Identities=13%  Similarity=0.136  Sum_probs=107.5

Q ss_pred             EEEEECCCCCEEEEec-C-CCcEEEEeCCccccccccCCcc---ccccCCCCceeecCCCCCCCCcccCCC-CCc----C
Q 021657           13 FALAMCPTEPYVLSGG-K-DKSVVLWSIQDHITSSATDPAT---AKSAGSSGSIIKQSPKPGDGNDKAADG-PSV----G   82 (309)
Q Consensus        13 ~~~~~~~~~~~l~t~~-~-dg~i~vwd~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~----~   82 (309)
                      ..++++|||++|+... . +..|-|.|+.+...........   ............+..+    ....... .++    .
T Consensus       108 ~~~~ls~dgk~l~V~n~~p~~~V~VvD~~~~kvv~ei~vp~~~~vy~t~e~~~~~~~~Dg----~~~~v~~d~~g~~~~~  183 (352)
T TIGR02658       108 WMTSLTPDNKTLLFYQFSPSPAVGVVDLEGKAFVRMMDVPDCYHIFPTANDTFFMHCRDG----SLAKVGYGTKGNPKIK  183 (352)
T ss_pred             ceEEECCCCCEEEEecCCCCCEEEEEECCCCcEEEEEeCCCCcEEEEecCCccEEEeecC----ceEEEEecCCCceEEe
Confidence            3789999999988766 3 7899999999874433322211   0011111111111110    0000000 000    0


Q ss_pred             ccccccc-----ccCCeEEEEEec-CCCcEEEEEcCCCeEEEEEcCCCCcce---EEEeec-------cCCceeEEEecc
Q 021657           83 PRGIYNG-----HEDTVEDVTFCP-SSAQEFCSVGDDSCLILWDARVGTSPV---IKVEKA-------HDADLHCVDWNP  146 (309)
Q Consensus        83 ~~~~~~~-----~~~~v~~~~~~~-~~~~~l~s~~~dg~i~iwd~~~~~~~~---~~~~~~-------~~~~v~~~~~~~  146 (309)
                      ....+..     ...+    .|.+ +| .++....+ |.|.+.|+.......   ...+..       ......-++++|
T Consensus       184 ~~~vf~~~~~~v~~rP----~~~~~dg-~~~~vs~e-G~V~~id~~~~~~~~~~~~~~~~~~~~~~~wrP~g~q~ia~~~  257 (352)
T TIGR02658       184 PTEVFHPEDEYLINHP----AYSNKSG-RLVWPTYT-GKIFQIDLSSGDAKFLPAIEAFTEAEKADGWRPGGWQQVAYHR  257 (352)
T ss_pred             eeeeecCCccccccCC----ceEcCCC-cEEEEecC-CeEEEEecCCCcceecceeeeccccccccccCCCcceeEEEcC
Confidence            0001111     0112    4455 66 55655555 999999975443111   111110       123334599999


Q ss_pred             CCCCeEEEEc----------CCCcEEEEecCCCCCCCCCCceeeeccCCCCeeEEEEecCCC-cEEEEecCCCcEEEEeC
Q 021657          147 LDDNLILTGS----------ADNSVRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWSPDKS-SVFGSSAEDGLLNIWDY  215 (309)
Q Consensus       147 ~~~~~l~~~~----------~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~~~dg~i~iwd~  215 (309)
                       +++.+++..          ..+.|.++|..+      .+.+..+.. ...+..|+++||++ .|+++...++.|.++|.
T Consensus       258 -dg~~lyV~~~~~~~~thk~~~~~V~ViD~~t------~kvi~~i~v-G~~~~~iavS~Dgkp~lyvtn~~s~~VsViD~  329 (352)
T TIGR02658       258 -ARDRIYLLADQRAKWTHKTASRFLFVVDAKT------GKRLRKIEL-GHEIDSINVSQDAKPLLYALSTGDKTLYIFDA  329 (352)
T ss_pred             -CCCEEEEEecCCccccccCCCCEEEEEECCC------CeEEEEEeC-CCceeeEEECCCCCeEEEEeCCCCCcEEEEEC
Confidence             777776632          225799999998      888888874 45788999999999 77766667899999999


Q ss_pred             Cc
Q 021657          216 EK  217 (309)
Q Consensus       216 ~~  217 (309)
                      .+
T Consensus       330 ~t  331 (352)
T TIGR02658       330 ET  331 (352)
T ss_pred             cC
Confidence            87

This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.

>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]

Probab=98.73  E-value=2.4e-07  Score=79.20  Aligned_cols=186  Identities=11%  Similarity=0.175  Sum_probs=123.8

Q ss_pred             CCCEEEEecCCCcEEEEeCCccccccccCCccccccCCCCceeecCCCCCCCCcccCCCCCcCcccccccccCCeEEEEE
Q 021657           20 TEPYVLSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTF   99 (309)
Q Consensus        20 ~~~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~   99 (309)
                      ++..++-|+-...+..+|+.+...............--.........+...|.+.+-|..+.+.++.+..|++.|.++..
T Consensus       146 ~~~~~i~Gg~Q~~li~~Dl~~~~e~r~~~v~a~~v~imR~Nnr~lf~G~t~G~V~LrD~~s~~~iht~~aHs~siSDfDv  225 (1118)
T KOG1275|consen  146 GPSTLIMGGLQEKLIHIDLNTEKETRTTNVSASGVTIMRYNNRNLFCGDTRGTVFLRDPNSFETIHTFDAHSGSISDFDV  225 (1118)
T ss_pred             CCcceeecchhhheeeeecccceeeeeeeccCCceEEEEecCcEEEeecccceEEeecCCcCceeeeeeccccceeeeec
Confidence            45566667777777777877654333322221111111111223444556677888888899999999999999987665


Q ss_pred             ecCCCcEEEEEcC---------CCeEEEEEcCCCCcceEEEeeccCCceeEEEeccCCCCeEEEEcCCCcEEEEecCCCC
Q 021657          100 CPSSAQEFCSVGD---------DSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLT  170 (309)
Q Consensus       100 ~~~~~~~l~s~~~---------dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~  170 (309)
                        .| ++|++||.         |.-|+|||++..+.  ...+.-+.+ ..-+.|+|.-...+++.+..|...+.|..+..
T Consensus       226 --~G-NlLitCG~S~R~~~l~~D~FvkVYDLRmmra--l~PI~~~~~-P~flrf~Psl~t~~~V~S~sGq~q~vd~~~ls  299 (1118)
T KOG1275|consen  226 --QG-NLLITCGYSMRRYNLAMDPFVKVYDLRMMRA--LSPIQFPYG-PQFLRFHPSLTTRLAVTSQSGQFQFVDTATLS  299 (1118)
T ss_pred             --cC-CeEEEeecccccccccccchhhhhhhhhhhc--cCCcccccC-chhhhhcccccceEEEEecccceeeccccccC
Confidence              45 67888874         67789999998772  322222223 25678888667789999999999999944321


Q ss_pred             CCCCCCceeeeccCCCCeeEEEEecCCCcEEEEecCCCcEEEEe
Q 021657          171 SNGVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWD  214 (309)
Q Consensus       171 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~dg~i~iwd  214 (309)
                      ..  ...+..+......+..+++++++.. +|.|..+|.|.+|.
T Consensus       300 NP--~~~~~~v~p~~s~i~~fDiSsn~~a-lafgd~~g~v~~wa  340 (1118)
T KOG1275|consen  300 NP--PAGVKMVNPNGSGISAFDISSNGDA-LAFGDHEGHVNLWA  340 (1118)
T ss_pred             CC--ccceeEEccCCCcceeEEecCCCce-EEEecccCcEeeec
Confidence            10  1222333334456999999999994 78999999999998

>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]

Probab=98.71  E-value=8.9e-06  Score=65.42  Aligned_cols=138  Identities=17%  Similarity=0.237  Sum_probs=91.5

Q ss_pred             CeEEEEEcCCCCcceEEEeeccCCceeEEEeccCCCCeEEEE--cCCCcEEEEecCCCCCCCCCCceeeeccCCCCeeEE
Q 021657          114 SCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTG--SADNSVRMFDRRNLTSNGVGSPINKFEGHSAAVLCV  191 (309)
Q Consensus       114 g~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~--~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~v~~~  191 (309)
                      ..+.|+++....   +.....-.++|...+|.| .++.|++.  ..+..+.++|++.       .....+  ....=+.+
T Consensus       255 snLyl~~~~e~~---i~V~~~~~~pVhdf~W~p-~S~~F~vi~g~~pa~~s~~~lr~-------Nl~~~~--Pe~~rNT~  321 (561)
T COG5354         255 SNLYLLRITERS---IPVEKDLKDPVHDFTWEP-LSSRFAVISGYMPASVSVFDLRG-------NLRFYF--PEQKRNTI  321 (561)
T ss_pred             ceEEEEeecccc---cceeccccccceeeeecc-cCCceeEEecccccceeeccccc-------ceEEec--CCcccccc
Confidence            568888887544   223335578999999999 66655544  4688999999995       433333  45556778


Q ss_pred             EEecCCCcEEEEecC--CCcEEEEeCCcccccccCCCCCcCCCCceeeeecCCCcceeeEEEccCCCeEEEEecCCCCCC
Q 021657          192 QWSPDKSSVFGSSAE--DGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKVVDFHWNASDPWTVVSVSDDCDST  269 (309)
Q Consensus       192 ~~~~~~~~l~~~~~~--dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~s~d~~s~  269 (309)
                      .|+|.++++|..|-.  .|.+.+||....-              .++..+.+.  ...-+.|+|+++++....-..  ==
T Consensus       322 ~fsp~~r~il~agF~nl~gni~i~~~~~rf--------------~~~~~~~~~--n~s~~~wspd~qF~~~~~ts~--k~  383 (561)
T COG5354         322 FFSPHERYILFAGFDNLQGNIEIFDPAGRF--------------KVAGAFNGL--NTSYCDWSPDGQFYDTDTTSE--KL  383 (561)
T ss_pred             cccCcccEEEEecCCccccceEEeccCCce--------------EEEEEeecC--CceEeeccCCceEEEecCCCc--cc
Confidence            999999997754432  3779999987611              122233332  345578999999877543211  11


Q ss_pred             CCCCeEEEEEccc
Q 021657          270 GGGGTLQIWRMSD  282 (309)
Q Consensus       270 ~~dg~v~vw~~~~  282 (309)
                      -.|..++|||+..
T Consensus       384 ~~Dn~i~l~~v~g  396 (561)
T COG5354         384 RVDNSIKLWDVYG  396 (561)
T ss_pred             ccCcceEEEEecC
Confidence            3479999999984

>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species

Probab=98.71  E-value=1.9e-05  Score=60.66  Aligned_cols=150  Identities=13%  Similarity=0.145  Sum_probs=93.5

Q ss_pred             cCCeEEEEEecCCCcEEEEEcCC--------CeEEEEEcCCCCcceEEEeeccCCceeEEEeccCCCCeE-EEEcCCCcE
Q 021657           91 EDTVEDVTFCPSSAQEFCSVGDD--------SCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLI-LTGSADNSV  161 (309)
Q Consensus        91 ~~~v~~~~~~~~~~~~l~s~~~d--------g~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l-~~~~~dg~i  161 (309)
                      ....+++++.++| ++.++....        |.|..++.. ++   .......-...+.++|+| +++.| ++-+..+.|
T Consensus        85 ~~~~ND~~vd~~G-~ly~t~~~~~~~~~~~~g~v~~~~~~-~~---~~~~~~~~~~pNGi~~s~-dg~~lyv~ds~~~~i  158 (246)
T PF08450_consen   85 FNRPNDVAVDPDG-NLYVTDSGGGGASGIDPGSVYRIDPD-GK---VTVVADGLGFPNGIAFSP-DGKTLYVADSFNGRI  158 (246)
T ss_dssp             TEEEEEEEE-TTS--EEEEEECCBCTTCGGSEEEEEEETT-SE---EEEEEEEESSEEEEEEET-TSSEEEEEETTTTEE
T ss_pred             cCCCceEEEcCCC-CEEEEecCCCccccccccceEEECCC-Ce---EEEEecCcccccceEECC-cchheeeccccccee
Confidence            3568899999999 666665543        557777765 34   223333345678999999 78765 466778899


Q ss_pred             EEEecCCCCCC-CCCCceeeeccCCCCeeEEEEecCCCcEEEEecCCCcEEEEeCCcccccccCCCCCcCCCCceeeeec
Q 021657          162 RMFDRRNLTSN-GVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHA  240 (309)
Q Consensus       162 ~i~d~~~~~~~-~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~  240 (309)
                      ..|++...... ...+....+....+..-.+++..+|. |+++....+.|.+++.+.  +              .+....
T Consensus       159 ~~~~~~~~~~~~~~~~~~~~~~~~~g~pDG~~vD~~G~-l~va~~~~~~I~~~~p~G--~--------------~~~~i~  221 (246)
T PF08450_consen  159 WRFDLDADGGELSNRRVFIDFPGGPGYPDGLAVDSDGN-LWVADWGGGRIVVFDPDG--K--------------LLREIE  221 (246)
T ss_dssp             EEEEEETTTCCEEEEEEEEE-SSSSCEEEEEEEBTTS--EEEEEETTTEEEEEETTS--C--------------EEEEEE
T ss_pred             EEEeccccccceeeeeeEEEcCCCCcCCCcceEcCCCC-EEEEEcCCCEEEEECCCc--c--------------EEEEEc
Confidence            99998753210 00011222333233477899999998 566666788999999763  2              233333


Q ss_pred             CCCcceeeEEE-ccCCCeEEEEec
Q 021657          241 GHRDKVVDFHW-NASDPWTVVSVS  263 (309)
Q Consensus       241 ~~~~~v~~~~~-~~~~~~~~~s~s  263 (309)
                      .....+++++| -|+...|+++.+
T Consensus       222 ~p~~~~t~~~fgg~~~~~L~vTta  245 (246)
T PF08450_consen  222 LPVPRPTNCAFGGPDGKTLYVTTA  245 (246)
T ss_dssp             -SSSSEEEEEEESTTSSEEEEEEB
T ss_pred             CCCCCEEEEEEECCCCCEEEEEeC
Confidence            33447899999 467777877643

These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....

>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]

Probab=98.68  E-value=7e-08  Score=82.33  Aligned_cols=173  Identities=12%  Similarity=0.181  Sum_probs=123.2

Q ss_pred             cCcccccccccCCeEEEEEecCCCcEEEEEcCCCeEEEEEcCCCCcceEEEeeccCCceeEEEeccCCCCeEEEEcCCC-
Q 021657           81 VGPRGIYNGHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADN-  159 (309)
Q Consensus        81 ~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg-  159 (309)
                      .+....+..|+...+|++|+-.. +.|+.|+..|.|+++++.++.  .......|.++|+-+.-+. ++..+++.+.-. 
T Consensus      1091 Fr~w~~frd~~~~fTc~afs~~~-~hL~vG~~~Geik~~nv~sG~--~e~s~ncH~SavT~vePs~-dgs~~Ltsss~S~ 1166 (1516)
T KOG1832|consen 1091 FRSWRSFRDETALFTCIAFSGGT-NHLAVGSHAGEIKIFNVSSGS--MEESVNCHQSAVTLVEPSV-DGSTQLTSSSSSS 1166 (1516)
T ss_pred             cccchhhhccccceeeEEeecCC-ceEEeeeccceEEEEEccCcc--ccccccccccccccccccC-CcceeeeeccccC
Confidence            45566778889999999999877 889999999999999999988  5677788999999999888 777766655443 


Q ss_pred             -cEEEEecCCCCCCCCCCceeeeccCCCCeeEEEEecCCCcEEEEecCCCcEEEEeCCcccccccCCCCCcCCCCceeee
Q 021657          160 -SVRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQ  238 (309)
Q Consensus       160 -~i~i~d~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~  238 (309)
                       -.-+|++...     +.+.++|..    -.++.|+....+ -+.|+.-....+||+.+.......           +..
T Consensus      1167 PlsaLW~~~s~-----~~~~Hsf~e----d~~vkFsn~~q~-r~~gt~~d~a~~YDvqT~~~l~ty-----------lt~ 1225 (1516)
T KOG1832|consen 1167 PLSALWDASST-----GGPRHSFDE----DKAVKFSNSLQF-RALGTEADDALLYDVQTCSPLQTY-----------LTD 1225 (1516)
T ss_pred             chHHHhccccc-----cCccccccc----cceeehhhhHHH-HHhcccccceEEEecccCcHHHHh-----------cCc
Confidence             3568998763     667777763    246788876543 235555567899999984443221           111


Q ss_pred             ecCCCcceeeEEEccCCCeEEEEecCCCCCCCCCCeEEEEEccccccCChhhHhHhhhc
Q 021657          239 HAGHRDKVVDFHWNASDPWTVVSVSDDCDSTGGGGTLQIWRMSDLIYRPQDEVLAELEK  297 (309)
Q Consensus       239 ~~~~~~~v~~~~~~~~~~~~~~s~s~d~~s~~~dg~v~vw~~~~~~~~~~~~~~~~~~~  297 (309)
                      ..+.+..-+...|+|.+..++             +.=.+||++      ..+.+..|..
T Consensus      1226 ~~~~~y~~n~a~FsP~D~LIl-------------ndGvLWDvR------~~~aIh~FD~ 1265 (1516)
T KOG1832|consen 1226 TVTSSYSNNLAHFSPCDTLIL-------------NDGVLWDVR------IPEAIHRFDQ 1265 (1516)
T ss_pred             chhhhhhccccccCCCcceEe-------------eCceeeeec------cHHHHhhhhh
Confidence            112222337788999888777             444689999      4555665543

>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL

Probab=98.66  E-value=5e-06  Score=68.29  Aligned_cols=176  Identities=13%  Similarity=0.114  Sum_probs=94.4

Q ss_pred             CCEEEEecCCCcEEEEeCCccccccccCCccccc--cCCCCceeecCCCCCCCCcccCCCCCcCcccccccccCCe----
Q 021657           21 EPYVLSGGKDKSVVLWSIQDHITSSATDPATAKS--AGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTV----   94 (309)
Q Consensus        21 ~~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v----   94 (309)
                      +..++.++.+|.+..+|.+++.............  +........  ....++.+..++..+++.+..+......+    
T Consensus       105 ~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~~~~~~p~v~~~~v~--v~~~~g~l~a~d~~tG~~~W~~~~~~~~~~~~~  182 (377)
T TIGR03300       105 GGLVFVGTEKGEVIALDAEDGKELWRAKLSSEVLSPPLVANGLVV--VRTNDGRLTALDAATGERLWTYSRVTPALTLRG  182 (377)
T ss_pred             CCEEEEEcCCCEEEEEECCCCcEeeeeccCceeecCCEEECCEEE--EECCCCeEEEEEcCCCceeeEEccCCCceeecC
Confidence            4566677777888888877664433322211110  000001111  12235566677776666554443222111    


Q ss_pred             -EEEEEecCCCcEEEEEcCCCeEEEEEcCCCCcceEEEeec-cC---Cc------e-eEEEeccCCCCeEEEEcCCCcEE
Q 021657           95 -EDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPVIKVEKA-HD---AD------L-HCVDWNPLDDNLILTGSADNSVR  162 (309)
Q Consensus        95 -~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~-~~---~~------v-~~~~~~~~~~~~l~~~~~dg~i~  162 (309)
                       .+... .+  ..++.+..+|.+..+|.++++.  .-.... ..   ..      + ....+   .+..+++++.+|.++
T Consensus       183 ~~sp~~-~~--~~v~~~~~~g~v~ald~~tG~~--~W~~~~~~~~g~~~~~~~~~~~~~p~~---~~~~vy~~~~~g~l~  254 (377)
T TIGR03300       183 SASPVI-AD--GGVLVGFAGGKLVALDLQTGQP--LWEQRVALPKGRTELERLVDVDGDPVV---DGGQVYAVSYQGRVA  254 (377)
T ss_pred             CCCCEE-EC--CEEEEECCCCEEEEEEccCCCE--eeeeccccCCCCCchhhhhccCCccEE---ECCEEEEEEcCCEEE
Confidence             01111 12  3567788889999999988872  221110 00   00      0 11111   245677788899999


Q ss_pred             EEecCCCCCCCCCCceeeeccCCCCeeEEEEecCCCcEEEEecCCCcEEEEeCCc
Q 021657          163 MFDRRNLTSNGVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEK  217 (309)
Q Consensus       163 i~d~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~dg~i~iwd~~~  217 (309)
                      .||..+      ++.+......  .......  .+.+++ .++.||.+..+|..+
T Consensus       255 a~d~~t------G~~~W~~~~~--~~~~p~~--~~~~vy-v~~~~G~l~~~d~~t  298 (377)
T TIGR03300       255 ALDLRS------GRVLWKRDAS--SYQGPAV--DDNRLY-VTDADGVVVALDRRS  298 (377)
T ss_pred             EEECCC------CcEEEeeccC--CccCceE--eCCEEE-EECCCCeEEEEECCC
Confidence            999988      7777665521  1222222  344454 677899999999976

Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.

>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]

Probab=98.63  E-value=3.5e-05  Score=62.89  Aligned_cols=261  Identities=10%  Similarity=0.120  Sum_probs=145.8

Q ss_pred             EEEEECCCCCEEEEecCCCcEEEEeCCccccccccCCccccc---cCCCCceeecC--------CCCCCCCcccCCCCCc
Q 021657           13 FALAMCPTEPYVLSGGKDKSVVLWSIQDHITSSATDPATAKS---AGSSGSIIKQS--------PKPGDGNDKAADGPSV   81 (309)
Q Consensus        13 ~~~~~~~~~~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~~---~~~~~~~~~~~--------~~~~~~~~~~~~~~~~   81 (309)
                      +-+.|||-|.||+|--.-| |.+|-=.+-.....+.......   ......+..++        .......+.+||..++
T Consensus       214 tyv~wSP~GTYL~t~Hk~G-I~lWGG~~f~r~~RF~Hp~Vq~idfSP~EkYLVT~s~~p~~~~~~d~e~~~l~IWDI~tG  292 (698)
T KOG2314|consen  214 TYVRWSPKGTYLVTFHKQG-IALWGGESFDRIQRFYHPGVQFIDFSPNEKYLVTYSPEPIIVEEDDNEGQQLIIWDIATG  292 (698)
T ss_pred             eeEEecCCceEEEEEeccc-eeeecCccHHHHHhccCCCceeeecCCccceEEEecCCccccCcccCCCceEEEEEcccc
Confidence            3567888888888777654 4577544332222221111110   00111111111        1233466788888888


Q ss_pred             Cccccccc--ccCCeE-EEEEecCCCcEEEEEcCCCeEEEEEcCCCCcceEEEeeccCCceeEEEeccCCCCeEEEEcC-
Q 021657           82 GPRGIYNG--HEDTVE-DVTFCPSSAQEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSA-  157 (309)
Q Consensus        82 ~~~~~~~~--~~~~v~-~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~-  157 (309)
                      ...+.+..  ....++ -..|+.++ .++|.-.. ..|.||+..+..  ......-.-..|....|+| .+++||-=.. 
T Consensus       293 ~lkrsF~~~~~~~~~WP~frWS~Dd-Ky~Arm~~-~sisIyEtpsf~--lld~Kslki~gIr~FswsP-~~~llAYwtpe  367 (698)
T KOG2314|consen  293 LLKRSFPVIKSPYLKWPIFRWSHDD-KYFARMTG-NSISIYETPSFM--LLDKKSLKISGIRDFSWSP-TSNLLAYWTPE  367 (698)
T ss_pred             chhcceeccCCCccccceEEeccCC-ceeEEecc-ceEEEEecCcee--eecccccCCccccCcccCC-CcceEEEEccc
Confidence            77766654  222333 35799988 77776655 469999876543  2222222346788999999 7776664322 


Q ss_pred             ----CCcEEEEecCCCCCCCCCCceeeeccCCCCeeEEEEecCCCcEEEEe---------cCCCcEEEEeCCcccccccC
Q 021657          158 ----DNSVRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWSPDKSSVFGSS---------AEDGLLNIWDYEKVGKKVEQ  224 (309)
Q Consensus       158 ----dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~---------~~dg~i~iwd~~~~~~~~~~  224 (309)
                          -..+.+..+.+      ++.+++-.-+.-.=..+-|..+|.+|.+-.         +.-..+.|+.++...-+   
T Consensus       368 ~~~~parvtL~evPs------~~~iRt~nlfnVsDckLhWQk~gdyLcvkvdR~tK~~~~g~f~n~eIfrireKdIp---  438 (698)
T KOG2314|consen  368 TNNIPARVTLMEVPS------KREIRTKNLFNVSDCKLHWQKSGDYLCVKVDRHTKSKVKGQFSNLEIFRIREKDIP---  438 (698)
T ss_pred             ccCCcceEEEEecCc------cceeeeccceeeeccEEEeccCCcEEEEEEEeeccccccceEeeEEEEEeeccCCC---
Confidence                12455555555      555555544444445577888888643211         11123556666552111   


Q ss_pred             CCCCcCCCCceeeeecCCCcceeeEEEccCCCeEEEEecCCCCCCCCCCeEEEEEccccccCChhhHhHhhhcccceEEE
Q 021657          225 GPRTTNYPAGLFFQHAGHRDKVVDFHWNASDPWTVVSVSDDCDSTGGGGTLQIWRMSDLIYRPQDEVLAELEKFKAHVIS  304 (309)
Q Consensus       225 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~s~d~~s~~~dg~v~vw~~~~~~~~~~~~~~~~~~~h~~~v~~  304 (309)
                                 + ..-.-...|...+|-|.|+.+.+..+.+     .-.++.+|.+...  ....+++.++..  .....
T Consensus       439 -----------v-e~velke~vi~FaWEP~gdkF~vi~g~~-----~k~tvsfY~~e~~--~~~~~lVk~~dk--~~~N~  497 (698)
T KOG2314|consen  439 -----------V-EVVELKESVIAFAWEPHGDKFAVISGNT-----VKNTVSFYAVETN--IKKPSLVKELDK--KFANT  497 (698)
T ss_pred             -----------c-eeeecchheeeeeeccCCCeEEEEEccc-----cccceeEEEeecC--CCchhhhhhhcc--cccce
Confidence                       1 1122346789999999999877766654     2468999998831  124556666654  45666


Q ss_pred             eeeCC
Q 021657          305 CTSKP  309 (309)
Q Consensus       305 ~~~~P  309 (309)
                      +-|+|
T Consensus       498 vfwsP  502 (698)
T KOG2314|consen  498 VFWSP  502 (698)
T ss_pred             EEEcC
Confidence            77766

>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]

Probab=98.61  E-value=1.7e-05  Score=70.51  Aligned_cols=115  Identities=17%  Similarity=0.378  Sum_probs=74.7

Q ss_pred             EEEEEecCCCcEEEEEc----CC-CeEEEEEcCCCCcceEEEeeccCCceeEEEeccCCCCeEEEEc---CCCcEEEEec
Q 021657           95 EDVTFCPSSAQEFCSVG----DD-SCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGS---ADNSVRMFDR  166 (309)
Q Consensus        95 ~~~~~~~~~~~~l~s~~----~d-g~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~---~dg~i~i~d~  166 (309)
                      +.|.|--|| .+|++..    .+ ..|++||-+ +..  -..-......=.+++|-| .|..+++-.   .|+.|.+|.-
T Consensus       199 ~~IsWRgDg-~~fAVs~~~~~~~~RkirV~drE-g~L--ns~se~~~~l~~~LsWkP-sgs~iA~iq~~~sd~~IvffEr  273 (1265)
T KOG1920|consen  199 TSISWRGDG-EYFAVSFVESETGTRKIRVYDRE-GAL--NSTSEPVEGLQHSLSWKP-SGSLIAAIQCKTSDSDIVFFER  273 (1265)
T ss_pred             ceEEEccCC-cEEEEEEEeccCCceeEEEeccc-chh--hcccCcccccccceeecC-CCCeEeeeeecCCCCcEEEEec
Confidence            468999888 7777732    23 799999976 441  111122233446899999 898888763   3567888875


Q ss_pred             CCCCCCCCCCceeeeccCCCCeeEEEEecCCCcEEEE---ecCCCcEEEEeCCcc
Q 021657          167 RNLTSNGVGSPINKFEGHSAAVLCVQWSPDKSSVFGS---SAEDGLLNIWDYEKV  218 (309)
Q Consensus       167 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~---~~~dg~i~iwd~~~~  218 (309)
                      .....   +.....+......+..++|+.++. +||.   ......|++|-+.+.
T Consensus       274 NGL~h---g~f~l~~p~de~~ve~L~Wns~sd-iLAv~~~~~e~~~v~lwt~~Ny  324 (1265)
T KOG1920|consen  274 NGLRH---GEFVLPFPLDEKEVEELAWNSNSD-ILAVVTSNLENSLVQLWTTGNY  324 (1265)
T ss_pred             CCccc---cccccCCcccccchheeeecCCCC-ceeeeecccccceEEEEEecCe
Confidence            53211   222222333344589999999999 5665   455556999998873

>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]

Probab=98.60  E-value=1.1e-06  Score=69.39  Aligned_cols=205  Identities=14%  Similarity=0.109  Sum_probs=135.6

Q ss_pred             cccCCCCCcceEEEEECCCCCEEEEecC-CCcEEEEeCCccc----cccccCCccccccCCC--CceeecCCCCCCCCcc
Q 021657            2 EILTGHQDNAEFALAMCPTEPYVLSGGK-DKSVVLWSIQDHI----TSSATDPATAKSAGSS--GSIIKQSPKPGDGNDK   74 (309)
Q Consensus         2 ~~l~~H~~~~V~~~~~~~~~~~l~t~~~-dg~i~vwd~~~~~----~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~   74 (309)
                      +.++.|.+ .|.+++.+-++.++.|.+. |..++++|+++-.    ......+.........  ............+.+.
T Consensus        47 KhFraHL~-~I~sl~~S~dg~L~~Sv~d~Dhs~KvfDvEn~DminmiKL~~lPg~a~wv~skGd~~s~IAVs~~~sg~i~  125 (558)
T KOG0882|consen   47 KHFRAHLG-VILSLAVSYDGWLFRSVEDPDHSVKVFDVENFDMINMIKLVDLPGFAEWVTSKGDKISLIAVSLFKSGKIF  125 (558)
T ss_pred             hhhHHHHH-HHHhhhccccceeEeeccCcccceeEEEeeccchhhhcccccCCCceEEecCCCCeeeeEEeecccCCCcE
Confidence            34667888 8899999999999999887 9999999998642    1222223222222222  2223333344556666


Q ss_pred             cCCCCCcC--cccccccccCCeEEEEEecCCCcEEEEEcCCCeEEEEEcCC-CCcc------------eEEEeeccCCce
Q 021657           75 AADGPSVG--PRGIYNGHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARV-GTSP------------VIKVEKAHDADL  139 (309)
Q Consensus        75 ~~~~~~~~--~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~-~~~~------------~~~~~~~~~~~v  139 (309)
                      ++|.....  ....-.-|..+|..+.+++.+ ..+++....|.|.-|.... -+.+            ....+...+...
T Consensus       126 VvD~~~d~~q~~~fkklH~sPV~~i~y~qa~-Ds~vSiD~~gmVEyWs~e~~~qfPr~~l~~~~K~eTdLy~f~K~Kt~p  204 (558)
T KOG0882|consen  126 VVDGFGDFCQDGYFKKLHFSPVKKIRYNQAG-DSAVSIDISGMVEYWSAEGPFQFPRTNLNFELKHETDLYGFPKAKTEP  204 (558)
T ss_pred             EECCcCCcCccceecccccCceEEEEeeccc-cceeeccccceeEeecCCCcccCccccccccccccchhhcccccccCc
Confidence            66655433  333345699999999999998 7788888899999998763 1110            011122345667


Q ss_pred             eEEEeccCCCCeEEEEcCCCcEEEEecCCCCCCCCCCceeeecc--------------------------------CC-C
Q 021657          140 HCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEG--------------------------------HS-A  186 (309)
Q Consensus       140 ~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~--------------------------------~~-~  186 (309)
                      .++.|+| ++..+.+-+.|..|++++.++      ++.++.+..                                +. .
T Consensus       205 ts~Efsp-~g~qistl~~DrkVR~F~~Kt------GklvqeiDE~~t~~~~q~ks~y~l~~VelgRRmaverelek~~~~  277 (558)
T KOG0882|consen  205 TSFEFSP-DGAQISTLNPDRKVRGFVFKT------GKLVQEIDEVLTDAQYQPKSPYGLMHVELGRRMAVERELEKHGST  277 (558)
T ss_pred             cceEEcc-ccCcccccCcccEEEEEEecc------chhhhhhhccchhhhhccccccccceeehhhhhhHHhhHhhhcCc
Confidence            8999999 999999999999999999998      444444321                                11 1


Q ss_pred             CeeEEEEecCCCcEEEEecCCCcEEEEeCCc
Q 021657          187 AVLCVQWSPDKSSVFGSSAEDGLLNIWDYEK  217 (309)
Q Consensus       187 ~v~~~~~~~~~~~l~~~~~~dg~i~iwd~~~  217 (309)
                      .-+.+.|...+.+|| -|+-= -|++.++.+
T Consensus       278 ~~~~~~fdes~~fll-y~t~~-gikvin~~t  306 (558)
T KOG0882|consen  278 VGTNAVFDESGNFLL-YGTIL-GIKVINLDT  306 (558)
T ss_pred             ccceeEEcCCCCEEE-eecce-eEEEEEeec
Confidence            234567888888765 44433 377777776

>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function

Probab=98.60  E-value=6.3e-05  Score=57.99  Aligned_cols=126  Identities=13%  Similarity=0.197  Sum_probs=77.5

Q ss_pred             CcccccccccCCeEEEEEecCCCcEEEEEc------------------CCCeEEEEEcCCCCcceEEEe--eccCCceeE
Q 021657           82 GPRGIYNGHEDTVEDVTFCPSSAQEFCSVG------------------DDSCLILWDARVGTSPVIKVE--KAHDADLHC  141 (309)
Q Consensus        82 ~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~------------------~dg~i~iwd~~~~~~~~~~~~--~~~~~~v~~  141 (309)
                      +.+..+..|.-.-..+.+.|+++ .|+.+.                  .+..+..-|..+++......+  ..|...|.-
T Consensus        89 ~ri~E~~s~GIGPHel~l~pDG~-tLvVANGGI~Thpd~GR~kLNl~tM~psL~~ld~~sG~ll~q~~Lp~~~~~lSiRH  167 (305)
T PF07433_consen   89 RRIGEFPSHGIGPHELLLMPDGE-TLVVANGGIETHPDSGRAKLNLDTMQPSLVYLDARSGALLEQVELPPDLHQLSIRH  167 (305)
T ss_pred             EEEeEecCCCcChhhEEEcCCCC-EEEEEcCCCccCcccCceecChhhcCCceEEEecCCCceeeeeecCccccccceee
Confidence            33444555555556677888873 344432                  234455556666663222234  347778999


Q ss_pred             EEeccCCCCeEEEEcCCCc-------EEEEecCCCCCCCCCCceeee-------ccCCCCeeEEEEecCCCcEEEEecCC
Q 021657          142 VDWNPLDDNLILTGSADNS-------VRMFDRRNLTSNGVGSPINKF-------EGHSAAVLCVQWSPDKSSVFGSSAED  207 (309)
Q Consensus       142 ~~~~~~~~~~l~~~~~dg~-------i~i~d~~~~~~~~~~~~~~~~-------~~~~~~v~~~~~~~~~~~l~~~~~~d  207 (309)
                      +++.+ ++..++..-..|.       +-+++..        ..+..+       ....+.+-+|++++++..+.+++-..
T Consensus       168 La~~~-~G~V~~a~Q~qg~~~~~~PLva~~~~g--------~~~~~~~~p~~~~~~l~~Y~gSIa~~~~g~~ia~tsPrG  238 (305)
T PF07433_consen  168 LAVDG-DGTVAFAMQYQGDPGDAPPLVALHRRG--------GALRLLPAPEEQWRRLNGYIGSIAADRDGRLIAVTSPRG  238 (305)
T ss_pred             EEecC-CCcEEEEEecCCCCCccCCeEEEEcCC--------CcceeccCChHHHHhhCCceEEEEEeCCCCEEEEECCCC
Confidence            99988 7666655543332       2233322        222222       23457899999999999877788889


Q ss_pred             CcEEEEeCCc
Q 021657          208 GLLNIWDYEK  217 (309)
Q Consensus       208 g~i~iwd~~~  217 (309)
                      +.+.+||..+
T Consensus       239 g~~~~~d~~t  248 (305)
T PF07433_consen  239 GRVAVWDAAT  248 (305)
T ss_pred             CEEEEEECCC
Confidence            9999999887

>KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]

Probab=98.57  E-value=5.8e-08  Score=79.75  Aligned_cols=188  Identities=15%  Similarity=0.168  Sum_probs=121.8

Q ss_pred             cCCeEEEEEecCC-CcEEEEEcCCCeEEEEEcCCCCcceEEEeeccCCceeEEEeccCCCCeEEEEcC----CCcEEEEe
Q 021657           91 EDTVEDVTFCPSS-AQEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSA----DNSVRMFD  165 (309)
Q Consensus        91 ~~~v~~~~~~~~~-~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~----dg~i~i~d  165 (309)
                      ...+.|+++.-+. ..+++.|..+|.|.+-.++...-.-.....++..+.++++|++.+.+.||+|-.    |..+.|||
T Consensus        56 tqy~kcva~~y~~d~cIlavG~atG~I~l~s~r~~hdSs~E~tp~~ar~Ct~lAwneLDtn~LAagldkhrnds~~~Iwd  135 (783)
T KOG1008|consen   56 TQYVKCVASFYGNDRCILAVGSATGNISLLSVRHPHDSSAEVTPGYARPCTSLAWNELDTNHLAAGLDKHRNDSSLKIWD  135 (783)
T ss_pred             CCCceeehhhcCCchhhhhhccccCceEEeecCCcccccceecccccccccccccccccHHHHHhhhhhhcccCCcccee
Confidence            4456777765443 367889999999999988765432234556788899999999977788888843    46789999


Q ss_pred             cCCCCCCCCCCceeeecc-CCCCeeEEEEecCCCcEEEEecCCCcEEEEeCCcccccccCCCCCcCCCCceeeeecCCCc
Q 021657          166 RRNLTSNGVGSPINKFEG-HSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRD  244 (309)
Q Consensus       166 ~~~~~~~~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  244 (309)
                      +.+.-..+  +.-..|.+ .....++++|..+.+ ++.+|.....+.++|++...                .....-.+.
T Consensus       136 i~s~ltvP--ke~~~fs~~~l~gqns~cwlrd~k-lvlaGm~sr~~~ifdlRqs~----------------~~~~svnTk  196 (783)
T KOG1008|consen  136 INSLLTVP--KESPLFSSSTLDGQNSVCWLRDTK-LVLAGMTSRSVHIFDLRQSL----------------DSVSSVNTK  196 (783)
T ss_pred             cccccCCC--ccccccccccccCccccccccCcc-hhhcccccchhhhhhhhhhh----------------hhhhhhhhh
Confidence            98742111  11111222 334566899997777 55688888899999998411                111122334


Q ss_pred             ceeeEEEccCCCeEEEEecCCCCCCCCCCeEEEEEccccccCChhhHhHhhhcccc----eEEEeeeCC
Q 021657          245 KVVDFHWNASDPWTVVSVSDDCDSTGGGGTLQIWRMSDLIYRPQDEVLAELEKFKA----HVISCTSKP  309 (309)
Q Consensus       245 ~v~~~~~~~~~~~~~~s~s~d~~s~~~dg~v~vw~~~~~~~~~~~~~~~~~~~h~~----~v~~~~~~P  309 (309)
                      .+..+...|-.+.++++-        .||.|.+||....    -..++..+...+.    .+..++|.|
T Consensus       197 ~vqG~tVdp~~~nY~cs~--------~dg~iAiwD~~rn----ienpl~~i~~~~N~~~~~l~~~aycP  253 (783)
T KOG1008|consen  197 YVQGITVDPFSPNYFCSN--------SDGDIAIWDTYRN----IENPLQIILRNENKKPKQLFALAYCP  253 (783)
T ss_pred             hcccceecCCCCCceecc--------ccCceeeccchhh----hccHHHHHhhCCCCcccceeeEEecc
Confidence            567777888444456433        3589999994311    2344554442233    488888877

>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals

Probab=98.57  E-value=7.3e-06  Score=66.67  Aligned_cols=148  Identities=14%  Similarity=0.168  Sum_probs=83.1

Q ss_pred             ceEEEEECCCCCEEEEecCCCcEEEEeCCcccccc-ccCCcccc-------ccCCCCceeecCCCCCCCCcccCCCCCcC
Q 021657           11 AEFALAMCPTEPYVLSGGKDKSVVLWSIQDHITSS-ATDPATAK-------SAGSSGSIIKQSPKPGDGNDKAADGPSVG   82 (309)
Q Consensus        11 ~V~~~~~~~~~~~l~t~~~dg~i~vwd~~~~~~~~-~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   82 (309)
                      .|+.+.|+++..-|+.|...|.|.||.+....... ...+....       .......+..+.......   +  .....
T Consensus         3 ~v~~vs~a~~t~Elav~~~~GeVv~~k~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~l~di~~r~~~~---~--~~gf~   77 (395)
T PF08596_consen    3 SVTHVSFAPETLELAVGLESGEVVLFKFGKNQNYGNREQPPDLDYNFRRFSLNNSPGKLTDISDRAPPS---L--KEGFL   77 (395)
T ss_dssp             -EEEEEEETTTTEEEEEETTS-EEEEEEEE------------------S--GGGSS-SEEE-GGG--TT------SEEEE
T ss_pred             eEEEEEecCCCceEEEEccCCcEEEEEcccCCCCCccCCCcccCcccccccccCCCcceEEehhhCCcc---c--ccccC
Confidence            48899999999999999999999999987643222 00000000       000011111111000000   0  01133


Q ss_pred             cccccccccCCeEEEEEecCCCcEEEEEcCCCeEEEEEcCCCCcceEEE--eec------cCCceeEEEecc----CC--
Q 021657           83 PRGIYNGHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPVIKV--EKA------HDADLHCVDWNP----LD--  148 (309)
Q Consensus        83 ~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~--~~~------~~~~v~~~~~~~----~~--  148 (309)
                      +...+....++|++++.+.-|  +++.|+.+|.+.|.|++...  ++..  +..      ....++++.|.-    .+  
T Consensus        78 P~~l~~~~~g~vtal~~S~iG--Fvaigy~~G~l~viD~RGPa--vI~~~~i~~~~~~~~~~~~vt~ieF~vm~~~~D~y  153 (395)
T PF08596_consen   78 PLTLLDAKQGPVTALKNSDIG--FVAIGYESGSLVVIDLRGPA--VIYNENIRESFLSKSSSSYVTSIEFSVMTLGGDGY  153 (395)
T ss_dssp             EEEEE---S-SEEEEEE-BTS--EEEEEETTSEEEEEETTTTE--EEEEEEGGG--T-SS----EEEEEEEEEE-TTSSS
T ss_pred             chhheeccCCcEeEEecCCCc--EEEEEecCCcEEEEECCCCe--EEeeccccccccccccccCeeEEEEEEEecCCCcc
Confidence            445556678999999998776  89999999999999997665  3332  122      234677888852    12  


Q ss_pred             -CCeEEEEcCCCcEEEEecC
Q 021657          149 -DNLILTGSADNSVRMFDRR  167 (309)
Q Consensus       149 -~~~l~~~~~dg~i~i~d~~  167 (309)
                       .-.+++|...|.+.+|.+.
T Consensus       154 SSi~L~vGTn~G~v~~fkIl  173 (395)
T PF08596_consen  154 SSICLLVGTNSGNVLTFKIL  173 (395)
T ss_dssp             EEEEEEEEETTSEEEEEEEE
T ss_pred             cceEEEEEeCCCCEEEEEEe
Confidence             2478999999999999885

The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.

>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL

Probab=98.49  E-value=2.9e-05  Score=63.87  Aligned_cols=176  Identities=17%  Similarity=0.082  Sum_probs=95.3

Q ss_pred             CCEEEEecCCCcEEEEeCCccccccccCCcccc-------ccCCCCceeecCCCCCCCCcccCCCCCcCcccccccc---
Q 021657           21 EPYVLSGGKDKSVVLWSIQDHITSSATDPATAK-------SAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGH---   90 (309)
Q Consensus        21 ~~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---   90 (309)
                      +..++.++.+|.|..||.+++............       .+.......  ..+..++.+..++..+++.+......   
T Consensus       145 ~~~v~v~~~~g~l~a~d~~tG~~~W~~~~~~~~~~~~~~~sp~~~~~~v--~~~~~~g~v~ald~~tG~~~W~~~~~~~~  222 (377)
T TIGR03300       145 NGLVVVRTNDGRLTALDAATGERLWTYSRVTPALTLRGSASPVIADGGV--LVGFAGGKLVALDLQTGQPLWEQRVALPK  222 (377)
T ss_pred             CCEEEEECCCCeEEEEEcCCCceeeEEccCCCceeecCCCCCEEECCEE--EEECCCCEEEEEEccCCCEeeeeccccCC
Confidence            456777888999999999887543332211100       000000011  11222344555555554433221100   


Q ss_pred             --c--CC---e-EEEEEecCCCcEEEEEcCCCeEEEEEcCCCCcceEEEeeccCCceeEEEeccCCCCeEEEEcCCCcEE
Q 021657           91 --E--DT---V-EDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVR  162 (309)
Q Consensus        91 --~--~~---v-~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~  162 (309)
                        .  ..   + ....+  .+ ..++.++.+|.+..+|..+++  ..-... .. .......   .+..+++++.+|.+.
T Consensus       223 g~~~~~~~~~~~~~p~~--~~-~~vy~~~~~g~l~a~d~~tG~--~~W~~~-~~-~~~~p~~---~~~~vyv~~~~G~l~  292 (377)
T TIGR03300       223 GRTELERLVDVDGDPVV--DG-GQVYAVSYQGRVAALDLRSGR--VLWKRD-AS-SYQGPAV---DDNRLYVTDADGVVV  292 (377)
T ss_pred             CCCchhhhhccCCccEE--EC-CEEEEEEcCCEEEEEECCCCc--EEEeec-cC-CccCceE---eCCEEEEECCCCeEE
Confidence              0  00   0 01111  13 357777889999999998887  333222 11 1222222   456777888999999


Q ss_pred             EEecCCCCCCCCCCceeeeccCC-CCeeEEEEecCCCcEEEEecCCCcEEEEeCCc
Q 021657          163 MFDRRNLTSNGVGSPINKFEGHS-AAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEK  217 (309)
Q Consensus       163 i~d~~~~~~~~~~~~~~~~~~~~-~~v~~~~~~~~~~~l~~~~~~dg~i~iwd~~~  217 (309)
                      .+|..+      ++.+.+..... ....+...  .+..+ .+++.+|.++++|..+
T Consensus       293 ~~d~~t------G~~~W~~~~~~~~~~ssp~i--~g~~l-~~~~~~G~l~~~d~~t  339 (377)
T TIGR03300       293 ALDRRS------GSELWKNDELKYRQLTAPAV--VGGYL-VVGDFEGYLHWLSRED  339 (377)
T ss_pred             EEECCC------CcEEEccccccCCccccCEE--ECCEE-EEEeCCCEEEEEECCC
Confidence            999988      77776653222 22222223  24444 5788999999999877

Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.

>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins

Probab=98.49  E-value=1.6e-05  Score=69.38  Aligned_cols=137  Identities=15%  Similarity=0.217  Sum_probs=95.1

Q ss_pred             CCCCcccCCCCCcCcccccccccCC-eEEEEEec-----CCCcEEEEEcCCCeEEEEEcCCCCcceEEE---eeccCCce
Q 021657           69 GDGNDKAADGPSVGPRGIYNGHEDT-VEDVTFCP-----SSAQEFCSVGDDSCLILWDARVGTSPVIKV---EKAHDADL  139 (309)
Q Consensus        69 ~~~~~~~~~~~~~~~~~~~~~~~~~-v~~~~~~~-----~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~---~~~~~~~v  139 (309)
                      ....++-.|+..++.+..+..|... |..++-..     +. .--+.|-.+..+..||.+-....++..   ........
T Consensus       502 ~~~~ly~mDLe~GKVV~eW~~~~~~~v~~~~p~~K~aqlt~-e~tflGls~n~lfriDpR~~~~k~v~~~~k~Y~~~~~F  580 (794)
T PF08553_consen  502 NPNKLYKMDLERGKVVEEWKVHDDIPVVDIAPDSKFAQLTN-EQTFLGLSDNSLFRIDPRLSGNKLVDSQSKQYSSKNNF  580 (794)
T ss_pred             CCCceEEEecCCCcEEEEeecCCCcceeEecccccccccCC-CceEEEECCCceEEeccCCCCCceeeccccccccCCCc
Confidence            4566778888888888888877643 55543221     12 234566778889999998654222211   12334567


Q ss_pred             eEEEeccCCCCeEEEEcCCCcEEEEecCCCCCCCCCCceeeeccCCCCeeEEEEecCCCcEEEEecCCCcEEEEeCC
Q 021657          140 HCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYE  216 (309)
Q Consensus       140 ~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~dg~i~iwd~~  216 (309)
                      +|++-..  ..++|+|+.+|.||+||--.      .+....+.+...+|..|..+.||+++||+|  +..+.+++..
T Consensus       581 s~~aTt~--~G~iavgs~~G~IRLyd~~g------~~AKT~lp~lG~pI~~iDvt~DGkwilaTc--~tyLlLi~t~  647 (794)
T PF08553_consen  581 SCFATTE--DGYIAVGSNKGDIRLYDRLG------KRAKTALPGLGDPIIGIDVTADGKWILATC--KTYLLLIDTL  647 (794)
T ss_pred             eEEEecC--CceEEEEeCCCcEEeecccc------hhhhhcCCCCCCCeeEEEecCCCcEEEEee--cceEEEEEEe
Confidence            7877664  56899999999999999432      333445667789999999999999988666  5678888864

Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].

>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats

Probab=98.39  E-value=5.1e-06  Score=68.21  Aligned_cols=74  Identities=20%  Similarity=0.322  Sum_probs=61.8

Q ss_pred             cccCCeEEEEEecCCCcEEEEEcCCCeEEEEEcCCCCcceEEEeeccCCceeEEEeccCCCCeEEEEcCCCcEEEEecCC
Q 021657           89 GHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRN  168 (309)
Q Consensus        89 ~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~  168 (309)
                      .....|.+++++|+. ..|+.|+.||.|.+||...+.   .. .....-..+.++|+| ++..+++|+..|.+.+||+.-
T Consensus       257 pL~s~v~~ca~sp~E-~kLvlGC~DgSiiLyD~~~~~---t~-~~ka~~~P~~iaWHp-~gai~~V~s~qGelQ~FD~AL  330 (545)
T PF11768_consen  257 PLPSQVICCARSPSE-DKLVLGCEDGSIILYDTTRGV---TL-LAKAEFIPTLIAWHP-DGAIFVVGSEQGELQCFDMAL  330 (545)
T ss_pred             ecCCcceEEecCccc-ceEEEEecCCeEEEEEcCCCe---ee-eeeecccceEEEEcC-CCcEEEEEcCCceEEEEEeec
Confidence            356789999999998 789999999999999986554   22 223446678999999 999999999999999999875

>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.38  E-value=3.1e-05  Score=66.45  Aligned_cols=181  Identities=9%  Similarity=0.120  Sum_probs=115.2

Q ss_pred             EEecCCCcEEEEEcCCCeEEEEEcCCCCcceEEEeeccCCc-eeEEEeccCCCCeEEEEcCCCc-----EEEEecCCCCC
Q 021657           98 TFCPSSAQEFCSVGDDSCLILWDARVGTSPVIKVEKAHDAD-LHCVDWNPLDDNLILTGSADNS-----VRMFDRRNLTS  171 (309)
Q Consensus        98 ~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~-v~~~~~~~~~~~~l~~~~~dg~-----i~i~d~~~~~~  171 (309)
                      +|++.+ ..++.|+.+|.|.+.+-+ .+  ....++++... |..+.... ..++|++.+.|+.     ++|||+...+.
T Consensus        30 c~~s~~-~~vvigt~~G~V~~Ln~s-~~--~~~~fqa~~~siv~~L~~~~-~~~~L~sv~Ed~~~np~llkiw~lek~~~  104 (933)
T KOG2114|consen   30 CCSSST-GSVVIGTADGRVVILNSS-FQ--LIRGFQAYEQSIVQFLYILN-KQNFLFSVGEDEQGNPVLLKIWDLEKVDK  104 (933)
T ss_pred             EEcCCC-ceEEEeeccccEEEeccc-ce--eeehheecchhhhhHhhccc-CceEEEEEeecCCCCceEEEEecccccCC
Confidence            355665 679999999999888743 22  34667777776 44444433 4468888777654     89999987643


Q ss_pred             CCCCCce--eeecc-----CCCCeeEEEEecCCCcEEEEecCCCcEEEEeCCcccccccCCCCCcCCCCceeeeecCCCc
Q 021657          172 NGVGSPI--NKFEG-----HSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRD  244 (309)
Q Consensus       172 ~~~~~~~--~~~~~-----~~~~v~~~~~~~~~~~l~~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  244 (309)
                      +....++  ..+..     ...++.+++.+.+-.. +|+|-.||.|..+.-+-....-           ....-...-..
T Consensus       105 n~sP~c~~~~ri~~~~np~~~~p~s~l~Vs~~l~~-Iv~Gf~nG~V~~~~GDi~RDrg-----------sr~~~~~~~~~  172 (933)
T KOG2114|consen  105 NNSPQCLYEHRIFTIKNPTNPSPASSLAVSEDLKT-IVCGFTNGLVICYKGDILRDRG-----------SRQDYSHRGKE  172 (933)
T ss_pred             CCCcceeeeeeeeccCCCCCCCcceEEEEEccccE-EEEEecCcEEEEEcCcchhccc-----------cceeeeccCCC
Confidence            3222233  12221     3567889999999774 7899999999988644311110           01111122356


Q ss_pred             ceeeEEEccCCCe-EEEEecCCCCCCCCCCeEEEEEccccccCChhhHhHhhhcccceEEEeeeCC
Q 021657          245 KVVDFHWNASDPW-TVVSVSDDCDSTGGGGTLQIWRMSDLIYRPQDEVLAELEKFKAHVISCTSKP  309 (309)
Q Consensus       245 ~v~~~~~~~~~~~-~~~s~s~d~~s~~~dg~v~vw~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~P  309 (309)
                      +|+.+++..++.. ++++.-         ..|.+|.+..     ....+..+..|..++.|.+|+|
T Consensus       173 pITgL~~~~d~~s~lFv~Tt---------~~V~~y~l~g-----r~p~~~~ld~~G~~lnCss~~~  224 (933)
T KOG2114|consen  173 PITGLALRSDGKSVLFVATT---------EQVMLYSLSG-----RTPSLKVLDNNGISLNCSSFSD  224 (933)
T ss_pred             CceeeEEecCCceeEEEEec---------ceeEEEEecC-----CCcceeeeccCCccceeeecCC
Confidence            8999999887776 333222         4899999983     2222444677777888877764

>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A

Probab=98.36  E-value=0.00017  Score=55.18  Aligned_cols=138  Identities=15%  Similarity=0.173  Sum_probs=79.6

Q ss_pred             EEEEEcCCCeEEEEEcCCCCcceEEE-eeccCC---ceeEEEeccCCCCeEEEEcCCCcEEEEecCCCCCCCCCCceeee
Q 021657          106 EFCSVGDDSCLILWDARVGTSPVIKV-EKAHDA---DLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKF  181 (309)
Q Consensus       106 ~l~s~~~dg~i~iwd~~~~~~~~~~~-~~~~~~---~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~  181 (309)
                      .++.++.++.|..+|..+++  .... ......   ....+.... .+..++++..++.|..+|+++      ++.+...
T Consensus        78 ~v~v~~~~~~l~~~d~~tG~--~~W~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~g~l~~~d~~t------G~~~w~~  148 (238)
T PF13360_consen   78 RVYVGTSDGSLYALDAKTGK--VLWSIYLTSSPPAGVRSSSSPAV-DGDRLYVGTSSGKLVALDPKT------GKLLWKY  148 (238)
T ss_dssp             EEEEEETTSEEEEEETTTSC--EEEEEEE-SSCTCSTB--SEEEE-ETTEEEEEETCSEEEEEETTT------TEEEEEE
T ss_pred             ccccccceeeeEecccCCcc--eeeeeccccccccccccccCceE-ecCEEEEEeccCcEEEEecCC------CcEEEEe
Confidence            45556678899999999988  3333 222111   122233333 477888888899999999999      8888877


Q ss_pred             ccCCCC----------eeEEEEecCCCcEEEEecCCCc-EEEEeCCcccccccCCCCCcCCCCceeeeecCCCcceeeEE
Q 021657          182 EGHSAA----------VLCVQWSPDKSSVFGSSAEDGL-LNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKVVDFH  250 (309)
Q Consensus       182 ~~~~~~----------v~~~~~~~~~~~l~~~~~~dg~-i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~  250 (309)
                      ......          +..-....++ .++ .+..++. +.+ |+.+.               ..+....  ...+..+ 
T Consensus       149 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~v~-~~~~~g~~~~~-d~~tg---------------~~~w~~~--~~~~~~~-  207 (238)
T PF13360_consen  149 PVGEPRGSSPISSFSDINGSPVISDG-RVY-VSSGDGRVVAV-DLATG---------------EKLWSKP--ISGIYSL-  207 (238)
T ss_dssp             ESSTT-SS--EEEETTEEEEEECCTT-EEE-EECCTSSEEEE-ETTTT---------------EEEEEEC--SS-ECEC-
T ss_pred             ecCCCCCCcceeeecccccceEEECC-EEE-EEcCCCeEEEE-ECCCC---------------CEEEEec--CCCccCC-
Confidence            654322          1122222344 455 5555665 555 88872               2222222  1122221 


Q ss_pred             EccCCCeEEEEecCCCCCCCCCCeEEEEEcc
Q 021657          251 WNASDPWTVVSVSDDCDSTGGGGTLQIWRMS  281 (309)
Q Consensus       251 ~~~~~~~~~~s~s~d~~s~~~dg~v~vw~~~  281 (309)
                      ..+.+..+++.. .+       +.|..||++
T Consensus       208 ~~~~~~~l~~~~-~~-------~~l~~~d~~  230 (238)
T PF13360_consen  208 PSVDGGTLYVTS-SD-------GRLYALDLK  230 (238)
T ss_dssp             EECCCTEEEEEE-TT-------TEEEEEETT
T ss_pred             ceeeCCEEEEEe-CC-------CEEEEEECC
Confidence            234566666543 34       999999998

...

>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins

Probab=98.28  E-value=6.2e-05  Score=65.86  Aligned_cols=138  Identities=17%  Similarity=0.227  Sum_probs=96.5

Q ss_pred             cCCCeEEEEEcCCCCcceEEEeeccCCc-eeEEEecc----CCCCeEEEEcCCCcEEEEecCCCCCCCCCCcee----ee
Q 021657          111 GDDSCLILWDARVGTSPVIKVEKAHDAD-LHCVDWNP----LDDNLILTGSADNSVRMFDRRNLTSNGVGSPIN----KF  181 (309)
Q Consensus       111 ~~dg~i~iwd~~~~~~~~~~~~~~~~~~-v~~~~~~~----~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~----~~  181 (309)
                      .....|+-.|++.++  ++..+..+... |..++-..    .+...-+.|-.+..+..||.|...    .+.+.    .+
T Consensus       501 ~~~~~ly~mDLe~GK--VV~eW~~~~~~~v~~~~p~~K~aqlt~e~tflGls~n~lfriDpR~~~----~k~v~~~~k~Y  574 (794)
T PF08553_consen  501 NNPNKLYKMDLERGK--VVEEWKVHDDIPVVDIAPDSKFAQLTNEQTFLGLSDNSLFRIDPRLSG----NKLVDSQSKQY  574 (794)
T ss_pred             CCCCceEEEecCCCc--EEEEeecCCCcceeEecccccccccCCCceEEEECCCceEEeccCCCC----Cceeecccccc
Confidence            355778888999998  77777776643 54443211    123456677788899999999742    11221    22


Q ss_pred             ccCCCCeeEEEEecCCCcEEEEecCCCcEEEEeCCcccccccCCCCCcCCCCceeeeecCCCcceeeEEEccCCCeEEEE
Q 021657          182 EGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKVVDFHWNASDPWTVVS  261 (309)
Q Consensus       182 ~~~~~~v~~~~~~~~~~~l~~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s  261 (309)
                       ..+...+|++-..+|.  +|.|+.+|.||+||--.               ......+.+-..+|..|..+.||.++++|
T Consensus       575 -~~~~~Fs~~aTt~~G~--iavgs~~G~IRLyd~~g---------------~~AKT~lp~lG~pI~~iDvt~DGkwilaT  636 (794)
T PF08553_consen  575 -SSKNNFSCFATTEDGY--IAVGSNKGDIRLYDRLG---------------KRAKTALPGLGDPIIGIDVTADGKWILAT  636 (794)
T ss_pred             -ccCCCceEEEecCCce--EEEEeCCCcEEeecccc---------------hhhhhcCCCCCCCeeEEEecCCCcEEEEe
Confidence             2455688999888886  67999999999999422               11223455677899999999999999998


Q ss_pred             ecCCCCCCCCCCeEEEEEcc
Q 021657          262 VSDDCDSTGGGGTLQIWRMS  281 (309)
Q Consensus       262 ~s~d~~s~~~dg~v~vw~~~  281 (309)
                      |-         ..|.++++.
T Consensus       637 c~---------tyLlLi~t~  647 (794)
T PF08553_consen  637 CK---------TYLLLIDTL  647 (794)
T ss_pred             ec---------ceEEEEEEe
Confidence            76         467777763

Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].

>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]

Probab=98.27  E-value=9.7e-05  Score=63.67  Aligned_cols=109  Identities=12%  Similarity=0.163  Sum_probs=73.3

Q ss_pred             EEEEECCCCCEEEEec----CCCcEEEEeCCccccccccCCccccccCCCCceeecCCCCCCCCcccCCCCCcCcccccc
Q 021657           13 FALAMCPTEPYVLSGG----KDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYN   88 (309)
Q Consensus        13 ~~~~~~~~~~~l~t~~----~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   88 (309)
                      +-..|+|...+|+.++    .-|.|-||--..........|....+.--.........+-..+.+.+|.....+......
T Consensus        19 ti~SWHPsePlfAVA~fS~er~GSVtIfadtGEPqr~Vt~P~hatSLCWHpe~~vLa~gwe~g~~~v~~~~~~e~htv~~   98 (1416)
T KOG3617|consen   19 TISSWHPSEPLFAVASFSPERGGSVTIFADTGEPQRDVTYPVHATSLCWHPEEFVLAQGWEMGVSDVQKTNTTETHTVVE   98 (1416)
T ss_pred             cccccCCCCceeEEEEecCCCCceEEEEecCCCCCcccccceehhhhccChHHHHHhhccccceeEEEecCCceeeeecc
Confidence            4468999999998776    367888885332211111112222221112222334445556667777777777777778


Q ss_pred             cccCCeEEEEEecCCCcEEEEEcCCCeEEEEEcC
Q 021657           89 GHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDAR  122 (309)
Q Consensus        89 ~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~  122 (309)
                      .|..+|..+.|+++| ..++++..-|.|.+|...
T Consensus        99 th~a~i~~l~wS~~G-~~l~t~d~~g~v~lwr~d  131 (1416)
T KOG3617|consen   99 THPAPIQGLDWSHDG-TVLMTLDNPGSVHLWRYD  131 (1416)
T ss_pred             CCCCCceeEEecCCC-CeEEEcCCCceeEEEEee
Confidence            899999999999999 889999999999999875

>KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.26  E-value=0.00034  Score=57.18  Aligned_cols=140  Identities=16%  Similarity=0.185  Sum_probs=94.8

Q ss_pred             CCCCCCcccCCCCCcCcccccccccCCeEEEEEecCCC------cEEEEEcCCCeEEEEEcCCCCcceEEEeeccC----
Q 021657           67 KPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSA------QEFCSVGDDSCLILWDARVGTSPVIKVEKAHD----  136 (309)
Q Consensus        67 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~------~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~----  136 (309)
                      +.....++-.++..++.+....-+.. |+-+.+.|+..      ..-+.|-.|..|.-||.+-.....+.....|.    
T Consensus       352 ~~~~~~l~klDIE~GKIVeEWk~~~d-i~mv~~t~d~K~~Ql~~e~TlvGLs~n~vfriDpRv~~~~kl~~~q~kqy~~k  430 (644)
T KOG2395|consen  352 GGEQDKLYKLDIERGKIVEEWKFEDD-INMVDITPDFKFAQLTSEQTLVGLSDNSVFRIDPRVQGKNKLAVVQSKQYSTK  430 (644)
T ss_pred             CCCcCcceeeecccceeeeEeeccCC-cceeeccCCcchhcccccccEEeecCCceEEecccccCcceeeeeeccccccc
Confidence            33345566667777777777776665 66677777641      11234557788999999865532333333332    


Q ss_pred             CceeEEEeccCCCCeEEEEcCCCcEEEEecCCCCCCCCCCceeeeccCCCCeeEEEEecCCCcEEEEecCCCcEEEEeCC
Q 021657          137 ADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYE  216 (309)
Q Consensus       137 ~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~dg~i~iwd~~  216 (309)
                      ....|.+-.  ...++++|+.+|.||+||--.      .+....+.+...+|..|..+.+|.++|+++  +..+.+-++.
T Consensus       431 ~nFsc~aTT--~sG~IvvgS~~GdIRLYdri~------~~AKTAlPgLG~~I~hVdvtadGKwil~Tc--~tyLlLi~t~  500 (644)
T KOG2395|consen  431 NNFSCFATT--ESGYIVVGSLKGDIRLYDRIG------RRAKTALPGLGDAIKHVDVTADGKWILATC--KTYLLLIDTL  500 (644)
T ss_pred             cccceeeec--CCceEEEeecCCcEEeehhhh------hhhhhcccccCCceeeEEeeccCcEEEEec--ccEEEEEEEe
Confidence            345555544  467899999999999999743      444556778889999999999999977554  6677777765


Q ss_pred             c
Q 021657          217 K  217 (309)
Q Consensus       217 ~  217 (309)
                      -
T Consensus       501 ~  501 (644)
T KOG2395|consen  501 I  501 (644)
T ss_pred             c
Confidence            4

>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]

Probab=98.24  E-value=0.00053  Score=61.52  Aligned_cols=205  Identities=11%  Similarity=0.219  Sum_probs=123.0

Q ss_pred             ceEEEEECCCCCEEEEecCCCcEEEEeCCccccccccCCccccccCCCCceeecCCCCCCCCcccCCCCCcCcccccccc
Q 021657           11 AEFALAMCPTEPYVLSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGH   90 (309)
Q Consensus        11 ~V~~~~~~~~~~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   90 (309)
                      .|.++.|..++.-++.+..+|.|.+-|.++...                                         .....-
T Consensus        70 ~i~s~~fl~d~~~i~v~~~~G~iilvd~et~~~-----------------------------------------eivg~v  108 (1265)
T KOG1920|consen   70 EIVSVQFLADTNSICVITALGDIILVDPETLEL-----------------------------------------EIVGNV  108 (1265)
T ss_pred             ceEEEEEecccceEEEEecCCcEEEEcccccce-----------------------------------------eeeeec
Confidence            688999999998898899999998887764311                                         111223


Q ss_pred             cCCeEEEEEecCCCcEEEEEcCCCeEEEEEcC----CCCc-----------------ceEEEeec---------------
Q 021657           91 EDTVEDVTFCPSSAQEFCSVGDDSCLILWDAR----VGTS-----------------PVIKVEKA---------------  134 (309)
Q Consensus        91 ~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~----~~~~-----------------~~~~~~~~---------------  134 (309)
                      ...|.+++|+||. ..++..+..+++.+-+-.    ..+.                 .....+.+               
T Consensus       109 d~GI~aaswS~De-e~l~liT~~~tll~mT~~f~~i~E~~L~~d~~~~sk~v~VGwGrkeTqfrgs~gr~~~~~~~~~ek  187 (1265)
T KOG1920|consen  109 DNGISAASWSPDE-ELLALITGRQTLLFMTKDFEPIAEKPLDADDERKSKFVNVGWGRKETQFRGSEGRQAARQKIEKEK  187 (1265)
T ss_pred             cCceEEEeecCCC-cEEEEEeCCcEEEEEeccccchhccccccccccccccceecccccceeeecchhhhcccccccccc
Confidence            4679999999998 677777776776654321    0000                 00001110               


Q ss_pred             ------cCCceeEEEeccCCCCeEEEE-----cCCCcEEEEecCCCCCCCCCCceeeeccCCCCeeEEEEecCCCcEEEE
Q 021657          135 ------HDADLHCVDWNPLDDNLILTG-----SADNSVRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWSPDKSSVFGS  203 (309)
Q Consensus       135 ------~~~~v~~~~~~~~~~~~l~~~-----~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~  203 (309)
                            ..+.=+++.|.- +|.++++.     .....|++||... .      .-..-....+.=.+++|-|.|.. +|+
T Consensus       188 ~~~~~~~~~~~~~IsWRg-Dg~~fAVs~~~~~~~~RkirV~drEg-~------Lns~se~~~~l~~~LsWkPsgs~-iA~  258 (1265)
T KOG1920|consen  188 ALEQIEQDDHKTSISWRG-DGEYFAVSFVESETGTRKIRVYDREG-A------LNSTSEPVEGLQHSLSWKPSGSL-IAA  258 (1265)
T ss_pred             cccchhhccCCceEEEcc-CCcEEEEEEEeccCCceeEEEecccc-h------hhcccCcccccccceeecCCCCe-Eee
Confidence                  112234689998 89999883     3337999999762 1      11111112233357999999984 554


Q ss_pred             e---cCCCcEEEEeCCcccccccCCCCCcCCCCceeeeecCCCcceeeEEEccCCCeEEEEecCCCCCCCCCCeEEEEEc
Q 021657          204 S---AEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKVVDFHWNASDPWTVVSVSDDCDSTGGGGTLQIWRM  280 (309)
Q Consensus       204 ~---~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~s~d~~s~~~dg~v~vw~~  280 (309)
                      -   +.|+.|.+|.-+....            ......+.....+|..++|+.++..|++..+     ......|++|-+
T Consensus       259 iq~~~sd~~IvffErNGL~h------------g~f~l~~p~de~~ve~L~Wns~sdiLAv~~~-----~~e~~~v~lwt~  321 (1265)
T KOG1920|consen  259 IQCKTSDSDIVFFERNGLRH------------GEFVLPFPLDEKEVEELAWNSNSDILAVVTS-----NLENSLVQLWTT  321 (1265)
T ss_pred             eeecCCCCcEEEEecCCccc------------cccccCCcccccchheeeecCCCCceeeeec-----ccccceEEEEEe
Confidence            3   2456788888654111            1111122223344899999998876554221     223345999999


Q ss_pred             ccc
Q 021657          281 SDL  283 (309)
Q Consensus       281 ~~~  283 (309)
                      .++
T Consensus       322 ~Ny  324 (1265)
T KOG1920|consen  322 GNY  324 (1265)
T ss_pred             cCe
Confidence            864

>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]

Probab=98.22  E-value=7.6e-05  Score=62.75  Aligned_cols=160  Identities=11%  Similarity=0.120  Sum_probs=103.3

Q ss_pred             ceEEEEECCCCCEEEEecCCCcEEEEeCCccccccccCCccccccCCCCceeecCCCCCCCCcccCCCCCcCcccccccc
Q 021657           11 AEFALAMCPTEPYVLSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGH   90 (309)
Q Consensus        11 ~V~~~~~~~~~~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   90 (309)
                      .|.=-+++..+++++.|+.-|.+.+|+-..+...                                       .....+.
T Consensus        35 ~v~lTc~dst~~~l~~GsS~G~lyl~~R~~~~~~---------------------------------------~~~~~~~   75 (726)
T KOG3621|consen   35 RVKLTCVDATEEYLAMGSSAGSVYLYNRHTGEMR---------------------------------------KLKNEGA   75 (726)
T ss_pred             eEEEEEeecCCceEEEecccceEEEEecCchhhh---------------------------------------cccccCc
Confidence            4555577778999999999999999996543111                                       1111123


Q ss_pred             cCCeEEEEEecCCCcEEEEEcCCCeEEEEEcCCCCcceEEE----eeccCCceeEEEeccCCCCeEEEEcCCCcEEEEec
Q 021657           91 EDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPVIKV----EKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDR  166 (309)
Q Consensus        91 ~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~----~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~  166 (309)
                      .+.+..+..+++. .++|.|+..|.|.++-+.....+....    -+.|...|++++|++ ++..+++|...|+|..-.+
T Consensus        76 ~~~~~~~~vs~~e-~lvAagt~~g~V~v~ql~~~~p~~~~~~t~~d~~~~~rVTal~Ws~-~~~k~ysGD~~Gkv~~~~L  153 (726)
T KOG3621|consen   76 TGITCVRSVSSVE-YLVAAGTASGRVSVFQLNKELPRDLDYVTPCDKSHKCRVTALEWSK-NGMKLYSGDSQGKVVLTEL  153 (726)
T ss_pred             cceEEEEEecchh-HhhhhhcCCceEEeehhhccCCCcceeeccccccCCceEEEEEecc-cccEEeecCCCceEEEEEe
Confidence            4455666777776 889999999999999887643222111    123678999999999 9999999999999998777


Q ss_pred             CCCCCCCCCCceeeeccCCCCeeEEEEecCCCcEEEEecCCCcEEEEeCCc
Q 021657          167 RNLTSNGVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEK  217 (309)
Q Consensus       167 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~dg~i~iwd~~~  217 (309)
                      .....  .....+.+-...+.|-.+....  .+||++...  ...++++..
T Consensus       154 ~s~~~--~~~~~q~il~~ds~IVQlD~~q--~~LLVStl~--r~~Lc~tE~  198 (726)
T KOG3621|consen  154 DSRQA--FLSKSQEILSEDSEIVQLDYLQ--SYLLVSTLT--RCILCQTEA  198 (726)
T ss_pred             chhhh--hccccceeeccCcceEEeeccc--ceehHhhhh--hhheeecch
Confidence            65100  0223333444456776666543  335544332  233455443

>smart00320 WD40 WD40 repeats

Probab=98.20  E-value=2.6e-06  Score=44.06  Aligned_cols=35  Identities=29%  Similarity=0.610  Sum_probs=31.6

Q ss_pred             cccCCCCCcceEEEEECCCCCEEEEecCCCcEEEEe
Q 021657            2 EILTGHQDNAEFALAMCPTEPYVLSGGKDKSVVLWS   37 (309)
Q Consensus         2 ~~l~~H~~~~V~~~~~~~~~~~l~t~~~dg~i~vwd   37 (309)
                      ..+.+|.. .|+++.|++++.++++++.|+.+++|+
T Consensus         6 ~~~~~~~~-~i~~~~~~~~~~~~~~~~~d~~~~~~~   40 (40)
T smart00320        6 KTLKGHTG-PVTSVAFSPDGKYLASASDDGTIKLWD   40 (40)
T ss_pred             EEEEecCC-ceeEEEECCCCCEEEEecCCCeEEEcC
Confidence            45678888 899999999999999999999999996

Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.

>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region

Probab=98.19  E-value=0.00021  Score=46.05  Aligned_cols=103  Identities=11%  Similarity=0.153  Sum_probs=70.7

Q ss_pred             eEEEEEe---cCCCcEEEEEcCCCeEEEEEcCCCCcceEEEeeccCCceeEEEeccCCCCeEEEEcCCCcEEEEecCCCC
Q 021657           94 VEDVTFC---PSSAQEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLT  170 (309)
Q Consensus        94 v~~~~~~---~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~  170 (309)
                      |++|++.   .+|.+.|+.|+.|..|++|+-.  +  ....+. ..+.|++++-..  ...|+.+..+|+|-+|+-..  
T Consensus         2 V~al~~~d~d~dg~~eLlvGs~D~~IRvf~~~--e--~~~Ei~-e~~~v~~L~~~~--~~~F~Y~l~NGTVGvY~~~~--   72 (111)
T PF14783_consen    2 VTALCLFDFDGDGENELLVGSDDFEIRVFKGD--E--IVAEIT-ETDKVTSLCSLG--GGRFAYALANGTVGVYDRSQ--   72 (111)
T ss_pred             eeEEEEEecCCCCcceEEEecCCcEEEEEeCC--c--EEEEEe-cccceEEEEEcC--CCEEEEEecCCEEEEEeCcc--
Confidence            5566554   4566889999999999999843  3  344443 456788888776  47899999999999998643  


Q ss_pred             CCCCCCceeeeccCCCCeeEEEEec---CCCcEEEEecCCCcEEE
Q 021657          171 SNGVGSPINKFEGHSAAVLCVQWSP---DKSSVFGSSAEDGLLNI  212 (309)
Q Consensus       171 ~~~~~~~~~~~~~~~~~v~~~~~~~---~~~~l~~~~~~dg~i~i  212 (309)
                            .+.+.+... .+.++++..   ||..-|++|-.+|.|-+
T Consensus        73 ------RlWRiKSK~-~~~~~~~~D~~gdG~~eLI~GwsnGkve~  110 (111)
T PF14783_consen   73 ------RLWRIKSKN-QVTSMAFYDINGDGVPELIVGWSNGKVEV  110 (111)
T ss_pred             ------eeeeeccCC-CeEEEEEEcCCCCCceEEEEEecCCeEEe
Confidence                  455565433 456665543   44444668888988753

>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]

Probab=98.15  E-value=0.00053  Score=51.01  Aligned_cols=108  Identities=16%  Similarity=0.177  Sum_probs=78.4

Q ss_pred             EEecCCCcEEEEEcCCCeEEEEEcCCCCcceEEEeeccCCceeEEEeccCCCCeEEEEcCCCcEEEEecCCCCCCCCCCc
Q 021657           98 TFCPSSAQEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSP  177 (309)
Q Consensus        98 ~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~  177 (309)
                      ...++.+.+++.|+..+.+.--|..+++.   .....-...+.+-+.-  -+++++.|...|.+++.+..+      +..
T Consensus        17 VV~~dskT~v~igSHs~~~~avd~~sG~~---~We~ilg~RiE~sa~v--vgdfVV~GCy~g~lYfl~~~t------Gs~   85 (354)
T KOG4649|consen   17 VVCNDSKTLVVIGSHSGIVIAVDPQSGNL---IWEAILGVRIECSAIV--VGDFVVLGCYSGGLYFLCVKT------GSQ   85 (354)
T ss_pred             EEecCCceEEEEecCCceEEEecCCCCcE---EeehhhCceeeeeeEE--ECCEEEEEEccCcEEEEEecc------hhh
Confidence            34455568899999999999999988872   2222223334333332  367899999999999999999      878


Q ss_pred             eeeeccCCCCeeEEEEecCCCcEEEEecCCCcEEEEeCCc
Q 021657          178 INKFEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEK  217 (309)
Q Consensus       178 ~~~~~~~~~~v~~~~~~~~~~~l~~~~~~dg~i~iwd~~~  217 (309)
                      +..+.....-=.+....+++. ++..|+.|+..+..|.+.
T Consensus        86 ~w~f~~~~~vk~~a~~d~~~g-lIycgshd~~~yalD~~~  124 (354)
T KOG4649|consen   86 IWNFVILETVKVRAQCDFDGG-LIYCGSHDGNFYALDPKT  124 (354)
T ss_pred             eeeeeehhhhccceEEcCCCc-eEEEecCCCcEEEecccc
Confidence            887765433223345677777 577999999999999988

>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]

Probab=98.12  E-value=0.00036  Score=57.58  Aligned_cols=112  Identities=17%  Similarity=0.213  Sum_probs=66.0

Q ss_pred             EEEEEecCCCcEEEEEcCCCeEEE--EEcCCCCcceEEEeeccCCceeEEEeccCCCCeEEEEc-CCCc--EEEEecCCC
Q 021657           95 EDVTFCPSSAQEFCSVGDDSCLIL--WDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGS-ADNS--VRMFDRRNL  169 (309)
Q Consensus        95 ~~~~~~~~~~~~l~s~~~dg~i~i--wd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~-~dg~--i~i~d~~~~  169 (309)
                      ..-+|+|+|..++++...||...|  .|+....  .. .+....+.-..-.|+| +|+.++-.+ ..|.  |.++|... 
T Consensus       241 ~~P~fspDG~~l~f~~~rdg~~~iy~~dl~~~~--~~-~Lt~~~gi~~~Ps~sp-dG~~ivf~Sdr~G~p~I~~~~~~g-  315 (425)
T COG0823         241 GAPAFSPDGSKLAFSSSRDGSPDIYLMDLDGKN--LP-RLTNGFGINTSPSWSP-DGSKIVFTSDRGGRPQIYLYDLEG-  315 (425)
T ss_pred             CCccCCCCCCEEEEEECCCCCccEEEEcCCCCc--ce-ecccCCccccCccCCC-CCCEEEEEeCCCCCcceEEECCCC-
Confidence            455899999888888888887554  5665555  22 2333333334668999 777665554 4554  55555554 


Q ss_pred             CCCCCCCceeeeccCCCCeeEEEEecCCCcEEEEecCCCc--EEEEeCCc
Q 021657          170 TSNGVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAEDGL--LNIWDYEK  217 (309)
Q Consensus       170 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~dg~--i~iwd~~~  217 (309)
                            .....+......-..-.|+|||++++.....+|.  |.+.|+..
T Consensus       316 ------~~~~riT~~~~~~~~p~~SpdG~~i~~~~~~~g~~~i~~~~~~~  359 (425)
T COG0823         316 ------SQVTRLTFSGGGNSNPVWSPDGDKIVFESSSGGQWDIDKNDLAS  359 (425)
T ss_pred             ------CceeEeeccCCCCcCccCCCCCCEEEEEeccCCceeeEEeccCC
Confidence                  2223333222222267899999987655544555  55555544

>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []

Probab=98.10  E-value=0.00089  Score=50.87  Aligned_cols=180  Identities=9%  Similarity=0.125  Sum_probs=98.1

Q ss_pred             ccccccCCeEEEEEecCCCcEEEEEcCCCeEEEEEcCCCCcceEEEee-ccCCceeEEEeccCCCCeEEEEcCCCcEEEE
Q 021657           86 IYNGHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPVIKVEK-AHDADLHCVDWNPLDDNLILTGSADNSVRMF  164 (309)
Q Consensus        86 ~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~  164 (309)
                      .+.+-...+..++|+|+.+.++++....+.|...+.. ++  .+.... ......-.+++.. ++.++++--.++.+.++
T Consensus        16 ~l~g~~~e~SGLTy~pd~~tLfaV~d~~~~i~els~~-G~--vlr~i~l~g~~D~EgI~y~g-~~~~vl~~Er~~~L~~~   91 (248)
T PF06977_consen   16 PLPGILDELSGLTYNPDTGTLFAVQDEPGEIYELSLD-GK--VLRRIPLDGFGDYEGITYLG-NGRYVLSEERDQRLYIF   91 (248)
T ss_dssp             E-TT--S-EEEEEEETTTTEEEEEETTTTEEEEEETT-----EEEEEE-SS-SSEEEEEE-S-TTEEEEEETTTTEEEEE
T ss_pred             ECCCccCCccccEEcCCCCeEEEEECCCCEEEEEcCC-CC--EEEEEeCCCCCCceeEEEEC-CCEEEEEEcCCCcEEEE
Confidence            3445556799999999876889999999999888874 55  333332 2235677888877 67777766678999999


Q ss_pred             ecCCCCCCCCCCceeeec-----cCCCCeeEEEEecCCCcEEEEecCCCcEEEEeCCcccccccCCCCCcCCCCceeeee
Q 021657          165 DRRNLTSNGVGSPINKFE-----GHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQH  239 (309)
Q Consensus       165 d~~~~~~~~~~~~~~~~~-----~~~~~v~~~~~~~~~~~l~~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~  239 (309)
                      ++..............+.     .++..+..++|++.+..++ .+-+..-..+|.++........   .. .....+...
T Consensus        92 ~~~~~~~~~~~~~~~~~~l~~~~~~N~G~EGla~D~~~~~L~-v~kE~~P~~l~~~~~~~~~~~~---~~-~~~~~~~~~  166 (248)
T PF06977_consen   92 TIDDDTTSLDRADVQKISLGFPNKGNKGFEGLAYDPKTNRLF-VAKERKPKRLYEVNGFPGGFDL---FV-SDDQDLDDD  166 (248)
T ss_dssp             EE----TT--EEEEEEEE---S---SS--EEEEEETTTTEEE-EEEESSSEEEEEEESTT-SS-----EE-EE-HHHH-H
T ss_pred             EEeccccccchhhceEEecccccCCCcceEEEEEcCCCCEEE-EEeCCCChhhEEEccccCccce---ee-ccccccccc
Confidence            985422110011112221     2445689999999988777 4555656677777641100000   00 000000111


Q ss_pred             cCCCcceeeEEEccCCCeEEEEecCCCCCCCCCCeEEEEEcc
Q 021657          240 AGHRDKVVDFHWNASDPWTVVSVSDDCDSTGGGGTLQIWRMS  281 (309)
Q Consensus       240 ~~~~~~v~~~~~~~~~~~~~~s~s~d~~s~~~dg~v~vw~~~  281 (309)
                      ......+.+++++|..+.+++-....       ..|..+|..
T Consensus       167 ~~~~~d~S~l~~~p~t~~lliLS~es-------~~l~~~d~~  201 (248)
T PF06977_consen  167 KLFVRDLSGLSYDPRTGHLLILSDES-------RLLLELDRQ  201 (248)
T ss_dssp             T--SS---EEEEETTTTEEEEEETTT-------TEEEEE-TT
T ss_pred             cceeccccceEEcCCCCeEEEEECCC-------CeEEEECCC
Confidence            22334578999999888777765554       777777754

Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.

>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]

Probab=98.09  E-value=0.00027  Score=58.35  Aligned_cols=156  Identities=17%  Similarity=0.255  Sum_probs=96.0

Q ss_pred             cccccccccCCeEEEEEecCCCcEEEEEcC--C-CeEEEEEcCCCCcceEEEeeccCCceeEEEeccCCCCeE-EEEcCC
Q 021657           83 PRGIYNGHEDTVEDVTFCPSSAQEFCSVGD--D-SCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLI-LTGSAD  158 (309)
Q Consensus        83 ~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~--d-g~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l-~~~~~d  158 (309)
                      ....+..-...+..-.|+|++..+....-.  . ..+.++|+.+++.+.+..+.++   -..-+|+| +++.+ ++...|
T Consensus       184 ~~~~l~~~~~~~~~p~ws~~~~~~~y~~f~~~~~~~i~~~~l~~g~~~~i~~~~g~---~~~P~fsp-DG~~l~f~~~rd  259 (425)
T COG0823         184 NQQKLTDSGSLILTPAWSPDGKKLAYVSFELGGCPRIYYLDLNTGKRPVILNFNGN---NGAPAFSP-DGSKLAFSSSRD  259 (425)
T ss_pred             ceeEecccCcceeccccCcCCCceEEEEEecCCCceEEEEeccCCccceeeccCCc---cCCccCCC-CCCEEEEEECCC
Confidence            334444445667778899998554333222  2 4599999999886555554443   34568999 66654 455567


Q ss_pred             Cc--EEEEecCCCCCCCCCCceeeeccCCCCeeEEEEecCCCcEEEEecCCCcEEEEeCCcccccccCCCCCcCCCCcee
Q 021657          159 NS--VRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLF  236 (309)
Q Consensus       159 g~--i~i~d~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~  236 (309)
                      |.  |+++|+..      .. +..+....+.-..=.|+|||++++.+.+..|.-.||-+...+....            .
T Consensus       260 g~~~iy~~dl~~------~~-~~~Lt~~~gi~~~Ps~spdG~~ivf~Sdr~G~p~I~~~~~~g~~~~------------r  320 (425)
T COG0823         260 GSPDIYLMDLDG------KN-LPRLTNGFGINTSPSWSPDGSKIVFTSDRGGRPQIYLYDLEGSQVT------------R  320 (425)
T ss_pred             CCccEEEEcCCC------Cc-ceecccCCccccCccCCCCCCEEEEEeCCCCCcceEEECCCCCcee------------E
Confidence            65  55667765      33 3334433333335679999999888888888877777665333211            1


Q ss_pred             eeecCCCcceeeEEEccCCCeEEEEec
Q 021657          237 FQHAGHRDKVVDFHWNASDPWTVVSVS  263 (309)
Q Consensus       237 ~~~~~~~~~v~~~~~~~~~~~~~~s~s  263 (309)
                      .+..+-.  -..-.|+|++.+++....
T Consensus       321 iT~~~~~--~~~p~~SpdG~~i~~~~~  345 (425)
T COG0823         321 LTFSGGG--NSNPVWSPDGDKIVFESS  345 (425)
T ss_pred             eeccCCC--CcCccCCCCCCEEEEEec
Confidence            1122211  126779999998776553

>KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=98.09  E-value=2.7e-05  Score=64.49  Aligned_cols=94  Identities=14%  Similarity=0.298  Sum_probs=75.9

Q ss_pred             cCCeEEEEEecCCCcEEEEEcCCCeEEEEEcCCCCcceEEEeeccCCcee-EEEeccCCCCeEEEEcCCCcEEEEecCCC
Q 021657           91 EDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLH-CVDWNPLDDNLILTGSADNSVRMFDRRNL  169 (309)
Q Consensus        91 ~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~-~~~~~~~~~~~l~~~~~dg~i~i~d~~~~  169 (309)
                      ...|.-+.|+|.- .++|.+..+|.|.+..++-.+   +-.+.-+..+++ +++|.| +|+.+++|-.||+|++.|..+ 
T Consensus        20 ~~~i~~~ewnP~~-dLiA~~t~~gelli~R~n~qR---lwtip~p~~~v~~sL~W~~-DGkllaVg~kdG~I~L~Dve~-   93 (665)
T KOG4640|consen   20 PINIKRIEWNPKM-DLIATRTEKGELLIHRLNWQR---LWTIPIPGENVTASLCWRP-DGKLLAVGFKDGTIRLHDVEK-   93 (665)
T ss_pred             ccceEEEEEcCcc-chhheeccCCcEEEEEeccce---eEeccCCCCccceeeeecC-CCCEEEEEecCCeEEEEEccC-
Confidence            4568889999987 789999999999999987333   566665667777 999999 999999999999999999998 


Q ss_pred             CCCCCCCceeee-ccCCCCeeEEEEec
Q 021657          170 TSNGVGSPINKF-EGHSAAVLCVQWSP  195 (309)
Q Consensus       170 ~~~~~~~~~~~~-~~~~~~v~~~~~~~  195 (309)
                           +..+..+ ......|.++-|.+
T Consensus        94 -----~~~l~~~~~s~e~~is~~~w~~  115 (665)
T KOG4640|consen   94 -----GGRLVSFLFSVETDISKGIWDR  115 (665)
T ss_pred             -----CCceeccccccccchheeeccc
Confidence                 6655552 23456788888874

>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]

Probab=98.07  E-value=4.9e-05  Score=63.85  Aligned_cols=121  Identities=12%  Similarity=0.173  Sum_probs=86.3

Q ss_pred             CCeEEEEEecCCCcEEEEEcCCCeEEEEEcCCCCcceEEEeeccCCceeEEEeccCCCCeEEEEcCCCcEEEEecCCCCC
Q 021657           92 DTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTS  171 (309)
Q Consensus        92 ~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~  171 (309)
                      ..|.=-++...+ .+++.|+.-|.+++|+-..+.. ......+....+.....++ +..++|+|+..|.|.++-+.....
T Consensus        34 ~~v~lTc~dst~-~~l~~GsS~G~lyl~~R~~~~~-~~~~~~~~~~~~~~~~vs~-~e~lvAagt~~g~V~v~ql~~~~p  110 (726)
T KOG3621|consen   34 ARVKLTCVDATE-EYLAMGSSAGSVYLYNRHTGEM-RKLKNEGATGITCVRSVSS-VEYLVAAGTASGRVSVFQLNKELP  110 (726)
T ss_pred             ceEEEEEeecCC-ceEEEecccceEEEEecCchhh-hcccccCccceEEEEEecc-hhHhhhhhcCCceEEeehhhccCC
Confidence            334434455555 7899999999999999776663 2222223445566777888 889999999999999998877321


Q ss_pred             CCCCCceeee-ccCCCCeeEEEEecCCCcEEEEecCCCcEEEEeCCc
Q 021657          172 NGVGSPINKF-EGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEK  217 (309)
Q Consensus       172 ~~~~~~~~~~-~~~~~~v~~~~~~~~~~~l~~~~~~dg~i~iwd~~~  217 (309)
                       +....+..+ +.|+..|++++|++++..++ +|...|.|.+-.+..
T Consensus       111 -~~~~~~t~~d~~~~~rVTal~Ws~~~~k~y-sGD~~Gkv~~~~L~s  155 (726)
T KOG3621|consen  111 -RDLDYVTPCDKSHKCRVTALEWSKNGMKLY-SGDSQGKVVLTELDS  155 (726)
T ss_pred             -CcceeeccccccCCceEEEEEecccccEEe-ecCCCceEEEEEech
Confidence             112222222 23678899999999999865 999999999887776

>COG3391 Uncharacterized conserved protein [Function unknown]

Probab=98.02  E-value=0.0053  Score=50.51  Aligned_cols=155  Identities=15%  Similarity=0.149  Sum_probs=101.3

Q ss_pred             CeEEEEEecCCCcEEEEEc--CCCeEEEEEcCCCCcceEEEeeccCCceeEEEeccCCCCeEEEE-cCCCcEEEEecCCC
Q 021657           93 TVEDVTFCPSSAQEFCSVG--DDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTG-SADNSVRMFDRRNL  169 (309)
Q Consensus        93 ~v~~~~~~~~~~~~l~s~~--~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~-~~dg~i~i~d~~~~  169 (309)
                      ....++++++++...++-.  .++++.+.|..+.+  ..........+ ..++++| +++.+... ..++.|.++|... 
T Consensus       117 ~P~~~~~~~~~~~vYV~n~~~~~~~vsvid~~t~~--~~~~~~vG~~P-~~~a~~p-~g~~vyv~~~~~~~v~vi~~~~-  191 (381)
T COG3391         117 GPVGLAVDPDGKYVYVANAGNGNNTVSVIDAATNK--VTATIPVGNTP-TGVAVDP-DGNKVYVTNSDDNTVSVIDTSG-  191 (381)
T ss_pred             CCceEEECCCCCEEEEEecccCCceEEEEeCCCCe--EEEEEecCCCc-ceEEECC-CCCeEEEEecCCCeEEEEeCCC-
Confidence            4567899999866666555  37889999987777  44444333344 8999999 88755554 4789999999776 


Q ss_pred             CCCCCCCcee-----eeccCCCCeeEEEEecCCCcEEEEecCC--CcEEEEeCCcccccccCCCCCcCCCCceeee--ec
Q 021657          170 TSNGVGSPIN-----KFEGHSAAVLCVQWSPDKSSVFGSSAED--GLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQ--HA  240 (309)
Q Consensus       170 ~~~~~~~~~~-----~~~~~~~~v~~~~~~~~~~~l~~~~~~d--g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~--~~  240 (309)
                           ....+     ... .......+.++|+|.+++++...+  +.+...|.....               ....  ..
T Consensus       192 -----~~v~~~~~~~~~~-~~~~P~~i~v~~~g~~~yV~~~~~~~~~v~~id~~~~~---------------v~~~~~~~  250 (381)
T COG3391         192 -----NSVVRGSVGSLVG-VGTGPAGIAVDPDGNRVYVANDGSGSNNVLKIDTATGN---------------VTATDLPV  250 (381)
T ss_pred             -----cceeccccccccc-cCCCCceEEECCCCCEEEEEeccCCCceEEEEeCCCce---------------EEEecccc
Confidence                 32221     122 223346789999999877666555  588888877611               1111  11


Q ss_pred             CCCcceeeEEEccCCCeEEEEecCCCCCCCCCCeEEEEEcc
Q 021657          241 GHRDKVVDFHWNASDPWTVVSVSDDCDSTGGGGTLQIWRMS  281 (309)
Q Consensus       241 ~~~~~v~~~~~~~~~~~~~~s~s~d~~s~~~dg~v~vw~~~  281 (309)
                      +.. ....+..+|++.++.+.-+..       +.+.+-|..
T Consensus       251 ~~~-~~~~v~~~p~g~~~yv~~~~~-------~~V~vid~~  283 (381)
T COG3391         251 GSG-APRGVAVDPAGKAAYVANSQG-------GTVSVIDGA  283 (381)
T ss_pred             ccC-CCCceeECCCCCEEEEEecCC-------CeEEEEeCC
Confidence            111 346678899998877654443       678888877

>PRK11138 outer membrane biogenesis protein BamB; Provisional

Probab=98.02  E-value=0.00076  Score=55.84  Aligned_cols=181  Identities=14%  Similarity=0.054  Sum_probs=95.4

Q ss_pred             CCEEEEecCCCcEEEEeCCccccccccCCccccccC--CCCceeecCCCCCCCCcccCCCCCcCcccccccccCCe----
Q 021657           21 EPYVLSGGKDKSVVLWSIQDHITSSATDPATAKSAG--SSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTV----   94 (309)
Q Consensus        21 ~~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v----   94 (309)
                      +..++.++.+|.+..+|.+++...............  .......+  ...++.+..++..+++.+.........+    
T Consensus       120 ~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~~~~ssP~v~~~~v~v--~~~~g~l~ald~~tG~~~W~~~~~~~~~~~~~  197 (394)
T PRK11138        120 GGKVYIGSEKGQVYALNAEDGEVAWQTKVAGEALSRPVVSDGLVLV--HTSNGMLQALNESDGAVKWTVNLDVPSLTLRG  197 (394)
T ss_pred             CCEEEEEcCCCEEEEEECCCCCCcccccCCCceecCCEEECCEEEE--ECCCCEEEEEEccCCCEeeeecCCCCcccccC
Confidence            456777888999999999888655544332211100  00111111  2334556666766666654443211100    


Q ss_pred             -EEEEEecCCCcEEEEEcCCCeEEEEEcCCCCcceEEEeeccC--Cc---eeEEEecc-CCCCeEEEEcCCCcEEEEecC
Q 021657           95 -EDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPVIKVEKAHD--AD---LHCVDWNP-LDDNLILTGSADNSVRMFDRR  167 (309)
Q Consensus        95 -~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~--~~---v~~~~~~~-~~~~~l~~~~~dg~i~i~d~~  167 (309)
                       .+-... ++  .++.++.+|.+...|..+++..-........  ..   ...+..+| ..+..++.++.+|.+..+|..
T Consensus       198 ~~sP~v~-~~--~v~~~~~~g~v~a~d~~~G~~~W~~~~~~~~~~~~~~~~~~~~~sP~v~~~~vy~~~~~g~l~ald~~  274 (394)
T PRK11138        198 ESAPATA-FG--GAIVGGDNGRVSAVLMEQGQLIWQQRISQPTGATEIDRLVDVDTTPVVVGGVVYALAYNGNLVALDLR  274 (394)
T ss_pred             CCCCEEE-CC--EEEEEcCCCEEEEEEccCChhhheeccccCCCccchhcccccCCCcEEECCEEEEEEcCCeEEEEECC
Confidence             011111 22  4666778899999998887631111111000  00   00111111 024566667789999999999


Q ss_pred             CCCCCCCCCceeeeccCCCCeeEEEEecCCCcEEEEecCCCcEEEEeCCc
Q 021657          168 NLTSNGVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEK  217 (309)
Q Consensus       168 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~dg~i~iwd~~~  217 (309)
                      +      ++.+.+....  ....+..  .+..++ .++.+|.+..+|..+
T Consensus       275 t------G~~~W~~~~~--~~~~~~~--~~~~vy-~~~~~g~l~ald~~t  313 (394)
T PRK11138        275 S------GQIVWKREYG--SVNDFAV--DGGRIY-LVDQNDRVYALDTRG  313 (394)
T ss_pred             C------CCEEEeecCC--CccCcEE--ECCEEE-EEcCCCeEEEEECCC
Confidence            8      7766654321  1122222  344455 667789999999876

>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []

Probab=98.00  E-value=0.0035  Score=47.70  Aligned_cols=196  Identities=13%  Similarity=0.154  Sum_probs=105.1

Q ss_pred             ccCCCCCcceEEEEECCCCC-EEEEecCCCcEEEEeCCccccccccCCccccccCCCCceeecCCCCCCCCcccCCCCCc
Q 021657            3 ILTGHQDNAEFALAMCPTEP-YVLSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSV   81 (309)
Q Consensus         3 ~l~~H~~~~V~~~~~~~~~~-~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (309)
                      .|.+-.. .+..|+|+|+.. ++++....+.|...+.+..                                        
T Consensus        16 ~l~g~~~-e~SGLTy~pd~~tLfaV~d~~~~i~els~~G~----------------------------------------   54 (248)
T PF06977_consen   16 PLPGILD-ELSGLTYNPDTGTLFAVQDEPGEIYELSLDGK----------------------------------------   54 (248)
T ss_dssp             E-TT--S--EEEEEEETTTTEEEEEETTTTEEEEEETT------------------------------------------
T ss_pred             ECCCccC-CccccEEcCCCCeEEEEECCCCEEEEEcCCCC----------------------------------------
Confidence            4555555 589999999755 6667778888877776421                                        


Q ss_pred             Ccccc--cccccCCeEEEEEecCCCcEEEEEcCCCeEEEEEcCCCCcc--e--EEEe-----eccCCceeEEEeccCCCC
Q 021657           82 GPRGI--YNGHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSP--V--IKVE-----KAHDADLHCVDWNPLDDN  150 (309)
Q Consensus        82 ~~~~~--~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~--~--~~~~-----~~~~~~v~~~~~~~~~~~  150 (309)
                       .+..  +.+ .+....|++..++ .++++.-.++.+.++++......  .  ...+     ..+...+-.++|+| .++
T Consensus        55 -vlr~i~l~g-~~D~EgI~y~g~~-~~vl~~Er~~~L~~~~~~~~~~~~~~~~~~~~~l~~~~~~N~G~EGla~D~-~~~  130 (248)
T PF06977_consen   55 -VLRRIPLDG-FGDYEGITYLGNG-RYVLSEERDQRLYIFTIDDDTTSLDRADVQKISLGFPNKGNKGFEGLAYDP-KTN  130 (248)
T ss_dssp             -EEEEEE-SS--SSEEEEEE-STT-EEEEEETTTTEEEEEEE----TT--EEEEEEEE---S---SS--EEEEEET-TTT
T ss_pred             -EEEEEeCCC-CCCceeEEEECCC-EEEEEEcCCCcEEEEEEeccccccchhhceEEecccccCCCcceEEEEEcC-CCC
Confidence             1111  222 3467888998776 66666667899999998443211  1  1111     12445689999999 666


Q ss_pred             eEEEEcCCCcEEEEecCCCCCCCCCCcee--e------eccCCCCeeEEEEecCCCcEEEEecCCCcEEEEeCCcccccc
Q 021657          151 LILTGSADNSVRMFDRRNLTSNGVGSPIN--K------FEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKV  222 (309)
Q Consensus       151 ~l~~~~~dg~i~i~d~~~~~~~~~~~~~~--~------~~~~~~~v~~~~~~~~~~~l~~~~~~dg~i~iwd~~~~~~~~  222 (309)
                      .|+++-...-..+|.++....   ...+.  .      ....-..+.+++++|...++++....+..|..+|...  +..
T Consensus       131 ~L~v~kE~~P~~l~~~~~~~~---~~~~~~~~~~~~~~~~~~~~d~S~l~~~p~t~~lliLS~es~~l~~~d~~G--~~~  205 (248)
T PF06977_consen  131 RLFVAKERKPKRLYEVNGFPG---GFDLFVSDDQDLDDDKLFVRDLSGLSYDPRTGHLLILSDESRLLLELDRQG--RVV  205 (248)
T ss_dssp             EEEEEEESSSEEEEEEESTT----SS--EEEE-HHHH-HT--SS---EEEEETTTTEEEEEETTTTEEEEE-TT----EE
T ss_pred             EEEEEeCCCChhhEEEccccC---ccceeeccccccccccceeccccceEEcCCCCeEEEEECCCCeEEEECCCC--CEE
Confidence            666666666666776653110   11111  1      1122345789999999888888888899999999543  221


Q ss_pred             cCCCCCcCCCCceeeeecC-------CCcceeeEEEccCCCeEEE
Q 021657          223 EQGPRTTNYPAGLFFQHAG-------HRDKVVDFHWNASDPWTVV  260 (309)
Q Consensus       223 ~~~~~~~~~~~~~~~~~~~-------~~~~v~~~~~~~~~~~~~~  260 (309)
                      .            ...+..       .-...-.|+|.++|..+++
T Consensus       206 ~------------~~~L~~g~~gl~~~~~QpEGIa~d~~G~LYIv  238 (248)
T PF06977_consen  206 S------------SLSLDRGFHGLSKDIPQPEGIAFDPDGNLYIV  238 (248)
T ss_dssp             E------------EEE-STTGGG-SS---SEEEEEE-TT--EEEE
T ss_pred             E------------EEEeCCcccCcccccCCccEEEECCCCCEEEE
Confidence            1            111111       1124578999998765443

Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.

>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region

Probab=97.99  E-value=0.00079  Score=43.45  Aligned_cols=68  Identities=18%  Similarity=0.306  Sum_probs=50.5

Q ss_pred             eeEEEeccCC---CCeEEEEcCCCcEEEEecCCCCCCCCCCceeeeccCCCCeeEEEEecCCCcEEEEecCCCcEEEEeC
Q 021657          139 LHCVDWNPLD---DNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDY  215 (309)
Q Consensus       139 v~~~~~~~~~---~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~dg~i~iwd~  215 (309)
                      |++|++...+   .+.|++|+.|..||+|+-.        ..+.++.. ...|++++-...++  |+-+..+|+|-+|+-
T Consensus         2 V~al~~~d~d~dg~~eLlvGs~D~~IRvf~~~--------e~~~Ei~e-~~~v~~L~~~~~~~--F~Y~l~NGTVGvY~~   70 (111)
T PF14783_consen    2 VTALCLFDFDGDGENELLVGSDDFEIRVFKGD--------EIVAEITE-TDKVTSLCSLGGGR--FAYALANGTVGVYDR   70 (111)
T ss_pred             eeEEEEEecCCCCcceEEEecCCcEEEEEeCC--------cEEEEEec-ccceEEEEEcCCCE--EEEEecCCEEEEEeC
Confidence            5667665433   3689999999999999854        35666664 45677887777665  568888999999986


Q ss_pred             Cc
Q 021657          216 EK  217 (309)
Q Consensus       216 ~~  217 (309)
                      ..
T Consensus        71 ~~   72 (111)
T PF14783_consen   71 SQ   72 (111)
T ss_pred             cc
Confidence            54

>PRK11138 outer membrane biogenesis protein BamB; Provisional

Probab=97.98  E-value=0.0011  Score=54.83  Aligned_cols=96  Identities=14%  Similarity=0.123  Sum_probs=59.8

Q ss_pred             EEEEEcCCCeEEEEEcCCCCcceEEEeeccCCceeEEEeccCCCCeEEEEcCCCcEEEEecCCCCCCCCCCceeeeccCC
Q 021657          106 EFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGHS  185 (309)
Q Consensus       106 ~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~  185 (309)
                      .++.++.+|.+..+|..+++.  .-... . .....+..   .+..++.++.+|.+..+|..+      ++.+.+.....
T Consensus       258 ~vy~~~~~g~l~ald~~tG~~--~W~~~-~-~~~~~~~~---~~~~vy~~~~~g~l~ald~~t------G~~~W~~~~~~  324 (394)
T PRK11138        258 VVYALAYNGNLVALDLRSGQI--VWKRE-Y-GSVNDFAV---DGGRIYLVDQNDRVYALDTRG------GVELWSQSDLL  324 (394)
T ss_pred             EEEEEEcCCeEEEEECCCCCE--EEeec-C-CCccCcEE---ECCEEEEEcCCCeEEEEECCC------CcEEEcccccC
Confidence            466667889999999998872  22211 1 11112222   456777788899999999988      76665443211


Q ss_pred             -CCeeEEEEecCCCcEEEEecCCCcEEEEeCCc
Q 021657          186 -AAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEK  217 (309)
Q Consensus       186 -~~v~~~~~~~~~~~l~~~~~~dg~i~iwd~~~  217 (309)
                       ....+..+.  +.++ ..++.||.+.+.|..+
T Consensus       325 ~~~~~sp~v~--~g~l-~v~~~~G~l~~ld~~t  354 (394)
T PRK11138        325 HRLLTAPVLY--NGYL-VVGDSEGYLHWINRED  354 (394)
T ss_pred             CCcccCCEEE--CCEE-EEEeCCCEEEEEECCC
Confidence             112222222  3334 4788899999999877

>KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=97.95  E-value=7.4e-05  Score=62.02  Aligned_cols=75  Identities=21%  Similarity=0.408  Sum_probs=64.9

Q ss_pred             CCceeEEEeccCCCCeEEEEcCCCcEEEEecCCCCCCCCCCceeeeccCCCCee-EEEEecCCCcEEEEecCCCcEEEEe
Q 021657          136 DADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGHSAAVL-CVQWSPDKSSVFGSSAEDGLLNIWD  214 (309)
Q Consensus       136 ~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~v~-~~~~~~~~~~l~~~~~~dg~i~iwd  214 (309)
                      ...+.-+.|+| .-.++|.+..+|.+.+..+.       .+.+.++.-+...++ +++|.|||+ ++|.|-.||+|++-|
T Consensus        20 ~~~i~~~ewnP-~~dLiA~~t~~gelli~R~n-------~qRlwtip~p~~~v~~sL~W~~DGk-llaVg~kdG~I~L~D   90 (665)
T KOG4640|consen   20 PINIKRIEWNP-KMDLIATRTEKGELLIHRLN-------WQRLWTIPIPGENVTASLCWRPDGK-LLAVGFKDGTIRLHD   90 (665)
T ss_pred             ccceEEEEEcC-ccchhheeccCCcEEEEEec-------cceeEeccCCCCccceeeeecCCCC-EEEEEecCCeEEEEE
Confidence            45678899999 99999999999999998877       567888886666666 999999999 689999999999999


Q ss_pred             CCccc
Q 021657          215 YEKVG  219 (309)
Q Consensus       215 ~~~~~  219 (309)
                      +.+..
T Consensus        91 ve~~~   95 (665)
T KOG4640|consen   91 VEKGG   95 (665)
T ss_pred             ccCCC
Confidence            99843

>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal

Probab=97.95  E-value=0.0043  Score=46.93  Aligned_cols=167  Identities=16%  Similarity=0.198  Sum_probs=97.2

Q ss_pred             EEEecCCCcEEEEEcCCCeEEEEEcCCCCcceEEEe---eccCCceeEEEeccCCCCeEEEEcCCCcEEEEecCCCCCCC
Q 021657           97 VTFCPSSAQEFCSVGDDSCLILWDARVGTSPVIKVE---KAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNG  173 (309)
Q Consensus        97 ~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~---~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~  173 (309)
                      ++.+.+| ++||. -.|..|.|-..+..-..++...   +.....=+.++|+| ++.+||.+...|+|++||+-.     
T Consensus         3 ~~~~~~G-k~lAi-~qd~~iEiRsa~Ddf~si~~kcqVpkD~~PQWRkl~WSp-D~tlLa~a~S~G~i~vfdl~g-----   74 (282)
T PF15492_consen    3 LALSSDG-KLLAI-LQDQCIEIRSAKDDFSSIIGKCQVPKDPNPQWRKLAWSP-DCTLLAYAESTGTIRVFDLMG-----   74 (282)
T ss_pred             eeecCCC-cEEEE-EeccEEEEEeccCCchheeEEEecCCCCCchheEEEECC-CCcEEEEEcCCCeEEEEeccc-----
Confidence            4556677 55554 4677788876654332222222   22233467899999 999999999999999999873     


Q ss_pred             CCCceeeecc-------CCCCeeEEEEecCC-----CcEEEEecCCCcEEEEeCCcc-cccccCCCCCcCCCCceeeeec
Q 021657          174 VGSPINKFEG-------HSAAVLCVQWSPDK-----SSVFGSSAEDGLLNIWDYEKV-GKKVEQGPRTTNYPAGLFFQHA  240 (309)
Q Consensus       174 ~~~~~~~~~~-------~~~~v~~~~~~~~~-----~~l~~~~~~dg~i~iwd~~~~-~~~~~~~~~~~~~~~~~~~~~~  240 (309)
                        ..+..+..       ....|..|.|.+..     .+.|.+-...|.++=|-+... .+...         ..-.+.+.
T Consensus        75 --~~lf~I~p~~~~~~d~~~Aiagl~Fl~~~~s~~ws~ELlvi~Y~G~L~Sy~vs~gt~q~y~---------e~hsfsf~  143 (282)
T PF15492_consen   75 --SELFVIPPAMSFPGDLSDAIAGLIFLEYKKSAQWSYELLVINYRGQLRSYLVSVGTNQGYQ---------ENHSFSFS  143 (282)
T ss_pred             --ceeEEcCcccccCCccccceeeeEeeccccccccceeEEEEeccceeeeEEEEcccCCcce---------eeEEEEec
Confidence              33333322       13456667675432     112334455777777766320 11111         11223333


Q ss_pred             C-CCcceeeEEEccCCCeEEEEecCCC---CCCCCCCeEEEEEccc
Q 021657          241 G-HRDKVVDFHWNASDPWTVVSVSDDC---DSTGGGGTLQIWRMSD  282 (309)
Q Consensus       241 ~-~~~~v~~~~~~~~~~~~~~s~s~d~---~s~~~dg~v~vw~~~~  282 (309)
                      . +...|.++.++|..+.|+++|...-   .+...+--+.-|++-+
T Consensus       144 ~~yp~Gi~~~vy~p~h~LLlVgG~~~~~~~~s~a~~~GLtaWRiL~  189 (282)
T PF15492_consen  144 SHYPHGINSAVYHPKHRLLLVGGCEQNQDGMSKASSCGLTAWRILS  189 (282)
T ss_pred             ccCCCceeEEEEcCCCCEEEEeccCCCCCccccccccCceEEEEcC
Confidence            3 3678999999997776666655431   0111234678888764

>smart00320 WD40 WD40 repeats

Probab=97.92  E-value=2.3e-05  Score=40.27  Aligned_cols=37  Identities=32%  Similarity=0.610  Sum_probs=31.9

Q ss_pred             cccccccccCCeEEEEEecCCCcEEEEEcCCCeEEEEE
Q 021657           83 PRGIYNGHEDTVEDVTFCPSSAQEFCSVGDDSCLILWD  120 (309)
Q Consensus        83 ~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd  120 (309)
                      +...+..|...|.++.|.+.+ .++++++.|+.+++|+
T Consensus         4 ~~~~~~~~~~~i~~~~~~~~~-~~~~~~~~d~~~~~~~   40 (40)
T smart00320        4 LLKTLKGHTGPVTSVAFSPDG-KYLASASDDGTIKLWD   40 (40)
T ss_pred             EEEEEEecCCceeEEEECCCC-CEEEEecCCCeEEEcC
Confidence            345566788999999999987 7899999999999996

Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.

>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=97.89  E-value=0.0043  Score=51.66  Aligned_cols=224  Identities=12%  Similarity=0.082  Sum_probs=100.3

Q ss_pred             ceEEEEECCCCCEEEEecCCCcEEEEeCCccccccccCCccccccCCCCceeecCCCCCCCCcccCCCCCcCcccccccc
Q 021657           11 AEFALAMCPTEPYVLSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGH   90 (309)
Q Consensus        11 ~V~~~~~~~~~~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   90 (309)
                      ....+.++|+|++++. ..||.-.|+.................... .........   ...+.++...+......+.. 
T Consensus        34 ~p~~ls~npngr~v~V-~g~geY~iyt~~~~r~k~~G~g~~~vw~~-~n~yAv~~~---~~~I~I~kn~~~~~~k~i~~-  107 (443)
T PF04053_consen   34 YPQSLSHNPNGRFVLV-CGDGEYEIYTALAWRNKAFGSGLSFVWSS-RNRYAVLES---SSTIKIYKNFKNEVVKSIKL-  107 (443)
T ss_dssp             --SEEEE-TTSSEEEE-EETTEEEEEETTTTEEEEEEE-SEEEE-T-SSEEEEE-T---TS-EEEEETTEE-TT------
T ss_pred             CCeeEEECCCCCEEEE-EcCCEEEEEEccCCcccccCceeEEEEec-CccEEEEEC---CCeEEEEEcCccccceEEcC-
Confidence            3578999999999888 45778888874333222222121222222 222222211   22233321112112112211 


Q ss_pred             cCCeEEEEEecCCCcEEEEEcCCCeEEEEEcCCCCcceEEEeeccCCceeEEEeccCCCCeEEEEcCCCcEEEEecCCC-
Q 021657           91 EDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNL-  169 (309)
Q Consensus        91 ~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~-  169 (309)
                      ...+..+-.   | .+|...+.+ .|.+||+.+++  .+.....  .+|..+.|++ ++.+++..+.+ .+.+++.... 
T Consensus       108 ~~~~~~If~---G-~LL~~~~~~-~i~~yDw~~~~--~i~~i~v--~~vk~V~Ws~-~g~~val~t~~-~i~il~~~~~~  176 (443)
T PF04053_consen  108 PFSVEKIFG---G-NLLGVKSSD-FICFYDWETGK--LIRRIDV--SAVKYVIWSD-DGELVALVTKD-SIYILKYNLEA  176 (443)
T ss_dssp             SS-EEEEE----S-SSEEEEETT-EEEEE-TTT----EEEEESS---E-EEEEE-T-TSSEEEEE-S--SEEEEEE-HHH
T ss_pred             CcccceEEc---C-cEEEEECCC-CEEEEEhhHcc--eeeEEec--CCCcEEEEEC-CCCEEEEEeCC-eEEEEEecchh
Confidence            112343432   5 666666554 89999999887  5666543  3489999999 89999888755 6777765431 


Q ss_pred             ----CCCCCCCceeeeccCCCCeeEEEEecCCCcEEEEecCCCcEEEEeCCcccccccCCCCCcCCCCceeeeecCCCcc
Q 021657          170 ----TSNGVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDK  245 (309)
Q Consensus       170 ----~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  245 (309)
                          ...+.......+..-...|.+.+|..+ - ++.+.. + .++.+--..                  ...+..-..+
T Consensus       177 ~~~~~~~g~e~~f~~~~E~~~~IkSg~W~~d-~-fiYtT~-~-~lkYl~~Ge------------------~~~i~~ld~~  234 (443)
T PF04053_consen  177 VAAIPEEGVEDAFELIHEISERIKSGCWVED-C-FIYTTS-N-HLKYLVNGE------------------TGIIAHLDKP  234 (443)
T ss_dssp             HHHBTTTB-GGGEEEEEEE-S--SEEEEETT-E-EEEE-T-T-EEEEEETTE------------------EEEEEE-SS-
T ss_pred             cccccccCchhceEEEEEecceeEEEEEEcC-E-EEEEcC-C-eEEEEEcCC------------------cceEEEcCCc
Confidence                000001133334333567889999887 3 333333 3 666522111                  1222222345


Q ss_pred             eeeEEEccCCCeEEEEecCCCCCCCCCCeEEEEEcc
Q 021657          246 VVDFHWNASDPWTVVSVSDDCDSTGGGGTLQIWRMS  281 (309)
Q Consensus       246 v~~~~~~~~~~~~~~s~s~d~~s~~~dg~v~vw~~~  281 (309)
                      +.=+...|..+.++        ....|+.+..+.+.
T Consensus       235 ~yllgy~~~~~~ly--------~~Dr~~~v~~~~ld  262 (443)
T PF04053_consen  235 LYLLGYLPKENRLY--------LIDRDGNVISYELD  262 (443)
T ss_dssp             -EEEEEETTTTEEE--------EE-TT--EEEEE--
T ss_pred             eEEEEEEccCCEEE--------EEECCCCEEEEEEC
Confidence            66666667555555        23344788888776

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.

>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1

Probab=97.86  E-value=0.0041  Score=48.95  Aligned_cols=246  Identities=12%  Similarity=0.128  Sum_probs=122.6

Q ss_pred             EEEECCCCCEEEEec----------CCCcEEEEeCCcccccccc--CCc---------cccccCCCCceeecCCCCCCCC
Q 021657           14 ALAMCPTEPYVLSGG----------KDKSVVLWSIQDHITSSAT--DPA---------TAKSAGSSGSIIKQSPKPGDGN   72 (309)
Q Consensus        14 ~~~~~~~~~~l~t~~----------~dg~i~vwd~~~~~~~~~~--~~~---------~~~~~~~~~~~~~~~~~~~~~~   72 (309)
                      .+..+|+++.+.+++          ..-.|.+||.++.....+.  .+.         .............+........
T Consensus        40 ~~~~spdgk~~y~a~T~~sR~~rG~RtDvv~~~D~~TL~~~~EI~iP~k~R~~~~~~~~~~~ls~dgk~~~V~N~TPa~S  119 (342)
T PF06433_consen   40 NVALSPDGKTIYVAETFYSRGTRGERTDVVEIWDTQTLSPTGEIEIPPKPRAQVVPYKNMFALSADGKFLYVQNFTPATS  119 (342)
T ss_dssp             EEEE-TTSSEEEEEEEEEEETTEEEEEEEEEEEETTTTEEEEEEEETTS-B--BS--GGGEEE-TTSSEEEEEEESSSEE
T ss_pred             ceeECCCCCEEEEEEEEEeccccccceeEEEEEecCcCcccceEecCCcchheecccccceEEccCCcEEEEEccCCCCe
Confidence            466899999887643          2346899999876222211  111         1112222222333333333444


Q ss_pred             cccCCCCCcCcccccccccCCeEEEEEecCCCcEEEEEcCCCeEEEEEcCCCCcceEEE---eeccCCce-eEEEeccCC
Q 021657           73 DKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPVIKV---EKAHDADL-HCVDWNPLD  148 (309)
Q Consensus        73 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~---~~~~~~~v-~~~~~~~~~  148 (309)
                      +.+.|....+.+..+.-. +   |....|.++.-|.+-|.||.+.-..+....++....   +.....++ ..-++.. .
T Consensus       120 VtVVDl~~~kvv~ei~~P-G---C~~iyP~~~~~F~~lC~DGsl~~v~Ld~~Gk~~~~~t~~F~~~~dp~f~~~~~~~-~  194 (342)
T PF06433_consen  120 VTVVDLAAKKVVGEIDTP-G---CWLIYPSGNRGFSMLCGDGSLLTVTLDADGKEAQKSTKVFDPDDDPLFEHPAYSR-D  194 (342)
T ss_dssp             EEEEETTTTEEEEEEEGT-S---EEEEEEEETTEEEEEETTSCEEEEEETSTSSEEEEEEEESSTTTS-B-S--EEET-T
T ss_pred             EEEEECCCCceeeeecCC-C---EEEEEecCCCceEEEecCCceEEEEECCCCCEeEeeccccCCCCcccccccceEC-C
Confidence            555555555554433311 1   222335554568889999999999987443222111   11222222 2333444 4


Q ss_pred             CCeEEEEcCCCcEEEEecCCCCCCCCCCceeeecc----------CCCCeeEEEEecCCCcEEEEec-------CCC--c
Q 021657          149 DNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEG----------HSAAVLCVQWSPDKSSVFGSSA-------EDG--L  209 (309)
Q Consensus       149 ~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~----------~~~~v~~~~~~~~~~~l~~~~~-------~dg--~  209 (309)
                      +..++--+.+|.|+-.|+....    -+....+..          ..+.-.-+++++....|++.--       .|+  .
T Consensus       195 ~~~~~F~Sy~G~v~~~dlsg~~----~~~~~~~~~~t~~e~~~~WrPGG~Q~~A~~~~~~rlyvLMh~g~~gsHKdpgte  270 (342)
T PF06433_consen  195 GGRLYFVSYEGNVYSADLSGDS----AKFGKPWSLLTDAEKADGWRPGGWQLIAYHAASGRLYVLMHQGGEGSHKDPGTE  270 (342)
T ss_dssp             TTEEEEEBTTSEEEEEEETTSS----EEEEEEEESS-HHHHHTTEEE-SSS-EEEETTTTEEEEEEEE--TT-TTS-EEE
T ss_pred             CCeEEEEecCCEEEEEeccCCc----ccccCcccccCccccccCcCCcceeeeeeccccCeEEEEecCCCCCCccCCceE
Confidence            4455556789999998887632    111122211          1123345677765554543321       122  2


Q ss_pred             EEEEeCCcccccccCCCCCcCCCCceeeeecCCCcceeeEEEccCCC-eEEEEecCCCCCCCCCCeEEEEEccccccCCh
Q 021657          210 LNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKVVDFHWNASDP-WTVVSVSDDCDSTGGGGTLQIWRMSDLIYRPQ  288 (309)
Q Consensus       210 i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~~~~s~s~d~~s~~~dg~v~vw~~~~~~~~~~  288 (309)
                      |.+||+.+               .+.+..+.- ..++.+|..+.+.. .|++....+       +.|.+||..      +
T Consensus       271 VWv~D~~t---------------~krv~Ri~l-~~~~~Si~Vsqd~~P~L~~~~~~~-------~~l~v~D~~------t  321 (342)
T PF06433_consen  271 VWVYDLKT---------------HKRVARIPL-EHPIDSIAVSQDDKPLLYALSAGD-------GTLDVYDAA------T  321 (342)
T ss_dssp             EEEEETTT---------------TEEEEEEEE-EEEESEEEEESSSS-EEEEEETTT-------TEEEEEETT------T
T ss_pred             EEEEECCC---------------CeEEEEEeC-CCccceEEEccCCCcEEEEEcCCC-------CeEEEEeCc------C
Confidence            55555555               223333332 24577888888765 444433334       899999999      6


Q ss_pred             hhHhHhhhc
Q 021657          289 DEVLAELEK  297 (309)
Q Consensus       289 ~~~~~~~~~  297 (309)
                      ++.+.++++
T Consensus       322 Gk~~~~~~~  330 (342)
T PF06433_consen  322 GKLVRSIEQ  330 (342)
T ss_dssp             --EEEEE--
T ss_pred             CcEEeehhc
Confidence            777776654

4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....

>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals

Probab=97.85  E-value=0.0037  Score=51.29  Aligned_cols=203  Identities=9%  Similarity=0.046  Sum_probs=100.9

Q ss_pred             cCCCCCcceEEEEECCCCCEEEEecCCCcEEEEeCCccccccccCCccccccCCCCceeecCCCCCCCCcccCCCCCcCc
Q 021657            4 LTGHQDNAEFALAMCPTEPYVLSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGP   83 (309)
Q Consensus         4 l~~H~~~~V~~~~~~~~~~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   83 (309)
                      ++...+ +|++++.| |=-++|.|..+|.+.|-|++.+..........                                
T Consensus        82 ~~~~~g-~vtal~~S-~iGFvaigy~~G~l~viD~RGPavI~~~~i~~--------------------------------  127 (395)
T PF08596_consen   82 LDAKQG-PVTALKNS-DIGFVAIGYESGSLVVIDLRGPAVIYNENIRE--------------------------------  127 (395)
T ss_dssp             E---S--SEEEEEE--BTSEEEEEETTSEEEEEETTTTEEEEEEEGGG--------------------------------
T ss_pred             eeccCC-cEeEEecC-CCcEEEEEecCCcEEEEECCCCeEEeeccccc--------------------------------
Confidence            344556 89999998 44599999999999999998763332211100                                


Q ss_pred             ccccccccCCeEEEEEec----CC---CcEEEEEcCCCeEEEEEcCC---CCcc--eEEEeeccCCceeEEE-eccCC--
Q 021657           84 RGIYNGHEDTVEDVTFCP----SS---AQEFCSVGDDSCLILWDARV---GTSP--VIKVEKAHDADLHCVD-WNPLD--  148 (309)
Q Consensus        84 ~~~~~~~~~~v~~~~~~~----~~---~~~l~s~~~dg~i~iwd~~~---~~~~--~~~~~~~~~~~v~~~~-~~~~~--  148 (309)
                      ...-......|+++.|.-    ++   .-++++|.+.|.+.+|.+.-   +...  .......+.++|..+. ++..+  
T Consensus       128 ~~~~~~~~~~vt~ieF~vm~~~~D~ySSi~L~vGTn~G~v~~fkIlp~~~g~f~v~~~~~~~~~~~~i~~I~~i~~~~G~  207 (395)
T PF08596_consen  128 SFLSKSSSSYVTSIEFSVMTLGGDGYSSICLLVGTNSGNVLTFKILPSSNGRFSVQFAGATTNHDSPILSIIPINADTGE  207 (395)
T ss_dssp             --T-SS----EEEEEEEEEE-TTSSSEEEEEEEEETTSEEEEEEEEE-GGG-EEEEEEEEE--SS----EEEEEETTT--
T ss_pred             cccccccccCeeEEEEEEEecCCCcccceEEEEEeCCCCEEEEEEecCCCCceEEEEeeccccCCCceEEEEEEECCCCC
Confidence            001112345677888862    11   14688889999999998741   1110  1111124556666555 32100  


Q ss_pred             -----------------CCeEEEEcCCCcEEEEecCCCCCCCCCCceeeeccCCCCeeEEEEe----cCCCcEEEEecCC
Q 021657          149 -----------------DNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWS----PDKSSVFGSSAED  207 (309)
Q Consensus       149 -----------------~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~v~~~~~~----~~~~~l~~~~~~d  207 (309)
                                       -..++....+..++++...+      .+..++.....-....+.+-    ..+...|++-..+
T Consensus       208 ~a~At~~~~~~l~~g~~i~g~vVvvSe~~irv~~~~~------~k~~~K~~~~~~~~~~~~vv~~~~~~~~~~Lv~l~~~  281 (395)
T PF08596_consen  208 SALATISAMQGLSKGISIPGYVVVVSESDIRVFKPPK------SKGAHKSFDDPFLCSSASVVPTISRNGGYCLVCLFNN  281 (395)
T ss_dssp             B-B-BHHHHHGGGGT----EEEEEE-SSEEEEE-TT---------EEEEE-SS-EEEEEEEEEEEE-EEEEEEEEEEETT
T ss_pred             cccCchhHhhccccCCCcCcEEEEEcccceEEEeCCC------CcccceeeccccccceEEEEeecccCCceEEEEEECC
Confidence                             11234444577899999887      55554444222233344453    1233356677889


Q ss_pred             CcEEEEeCCcccccccCCCCCcCCCCceeeeecC----CCcceeeEEEccCCCeEEEE
Q 021657          208 GLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAG----HRDKVVDFHWNASDPWTVVS  261 (309)
Q Consensus       208 g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~v~~~~~~~~~~~~~~s  261 (309)
                      |.+++|.+...++.               ....-    +...+....++++|+.++.+
T Consensus       282 G~i~i~SLP~Lkei---------------~~~~l~~~~d~~~~~~ssis~~Gdi~~~~  324 (395)
T PF08596_consen  282 GSIRIYSLPSLKEI---------------KSVSLPPPLDSRRLSSSSISRNGDIFYWT  324 (395)
T ss_dssp             SEEEEEETTT--EE---------------EEEE-SS---HHHHTT-EE-TTS-EEEE-
T ss_pred             CcEEEEECCCchHh---------------hcccCCCccccccccccEECCCCCEEEEe
Confidence            99999999873332               22222    22356677788888865544

The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.

>PRK02888 nitrous-oxide reductase; Validated

Probab=97.82  E-value=0.0017  Score=55.25  Aligned_cols=86  Identities=9%  Similarity=0.087  Sum_probs=55.0

Q ss_pred             CCCeeEEEEecCCCcEEEEecCCCcEEEEeCCcccccccCCCCCcCCCCceeeeecCCCcceeeEEEccCCCeEEEEecC
Q 021657          185 SAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKVVDFHWNASDPWTVVSVSD  264 (309)
Q Consensus       185 ~~~v~~~~~~~~~~~l~~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~s~  264 (309)
                      ......++++|||+++++++..+..+.|+|+.+.........   ......+.+.. -...-...+|.+++. .+.|..-
T Consensus       320 GKsPHGV~vSPDGkylyVanklS~tVSVIDv~k~k~~~~~~~---~~~~~vvaeve-vGlGPLHTaFDg~G~-aytslf~  394 (635)
T PRK02888        320 PKNPHGVNTSPDGKYFIANGKLSPTVTVIDVRKLDDLFDGKI---KPRDAVVAEPE-LGLGPLHTAFDGRGN-AYTTLFL  394 (635)
T ss_pred             CCCccceEECCCCCEEEEeCCCCCcEEEEEChhhhhhhhccC---CccceEEEeec-cCCCcceEEECCCCC-EEEeEee
Confidence            344567999999999999999999999999988543221110   00011111111 123345677888765 5554444


Q ss_pred             CCCCCCCCCeEEEEEccc
Q 021657          265 DCDSTGGGGTLQIWRMSD  282 (309)
Q Consensus       265 d~~s~~~dg~v~vw~~~~  282 (309)
                      |       ..|..|++..
T Consensus       395 d-------sqv~kwn~~~  405 (635)
T PRK02888        395 D-------SQIVKWNIEA  405 (635)
T ss_pred             c-------ceeEEEehHH
Confidence            4       8999999984

>COG3391 Uncharacterized conserved protein [Function unknown]

Probab=97.77  E-value=0.011  Score=48.73  Aligned_cols=162  Identities=14%  Similarity=0.170  Sum_probs=109.3

Q ss_pred             eEEEEEecCCCcEEEEEcCCCeEEEEEcCCCCcceEEEeeccCCceeEEEeccCCCCeEEEEcC---CCcEEEEecCCCC
Q 021657           94 VEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSA---DNSVRMFDRRNLT  170 (309)
Q Consensus        94 v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~---dg~i~i~d~~~~~  170 (309)
                      -..+..++.+.+.+++...+..|.+.|....+  ......-. .....++++| ++..+.++..   ++.+.+.|..+  
T Consensus        76 p~~i~v~~~~~~vyv~~~~~~~v~vid~~~~~--~~~~~~vG-~~P~~~~~~~-~~~~vYV~n~~~~~~~vsvid~~t--  149 (381)
T COG3391          76 PAGVAVNPAGNKVYVTTGDSNTVSVIDTATNT--VLGSIPVG-LGPVGLAVDP-DGKYVYVANAGNGNNTVSVIDAAT--  149 (381)
T ss_pred             ccceeeCCCCCeEEEecCCCCeEEEEcCcccc--eeeEeeec-cCCceEEECC-CCCEEEEEecccCCceEEEEeCCC--
Confidence            45678888886677787778999999977666  33333222 2667899999 6655555544   68899999888  


Q ss_pred             CCCCCCceeeeccCCCCeeEEEEecCCCcEEEEecCCCcEEEEeCCcccccccCCCCCcCCCCceeeeecCCCcceeeEE
Q 021657          171 SNGVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKVVDFH  250 (309)
Q Consensus       171 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~  250 (309)
                          .+.+.+......+ ..+++.|+|..++++-..++.|.+.|........ .          .......-...-..+.
T Consensus       150 ----~~~~~~~~vG~~P-~~~a~~p~g~~vyv~~~~~~~v~vi~~~~~~v~~-~----------~~~~~~~~~~~P~~i~  213 (381)
T COG3391         150 ----NKVTATIPVGNTP-TGVAVDPDGNKVYVTNSDDNTVSVIDTSGNSVVR-G----------SVGSLVGVGTGPAGIA  213 (381)
T ss_pred             ----CeEEEEEecCCCc-ceEEECCCCCeEEEEecCCCeEEEEeCCCcceec-c----------ccccccccCCCCceEE
Confidence                6777765544444 8899999999888777789999999976621110 0          0000111223347788


Q ss_pred             EccCCCeEEEEecCCCCCCCCCCeEEEEEccc
Q 021657          251 WNASDPWTVVSVSDDCDSTGGGGTLQIWRMSD  282 (309)
Q Consensus       251 ~~~~~~~~~~s~s~d~~s~~~dg~v~vw~~~~  282 (309)
                      ++|++.++.++...+     .++.+...|...
T Consensus       214 v~~~g~~~yV~~~~~-----~~~~v~~id~~~  240 (381)
T COG3391         214 VDPDGNRVYVANDGS-----GSNNVLKIDTAT  240 (381)
T ss_pred             ECCCCCEEEEEeccC-----CCceEEEEeCCC
Confidence            999999777755332     246788887774

>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A

Probab=97.77  E-value=0.0097  Score=45.43  Aligned_cols=101  Identities=17%  Similarity=0.150  Sum_probs=63.7

Q ss_pred             cEEEEEcCCCeEEEEEcCCCCcceEEEeeccCCceeEEEeccCCCCeEEEEcCCCcEEEEecCCCCCCCCCCceeee-cc
Q 021657          105 QEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKF-EG  183 (309)
Q Consensus       105 ~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~-~~  183 (309)
                      ..+++++.++.|..||..+++  ..-.... ...+......  .+..++++..++.++.+|..+      ++.+.+. ..
T Consensus        37 ~~v~~~~~~~~l~~~d~~tG~--~~W~~~~-~~~~~~~~~~--~~~~v~v~~~~~~l~~~d~~t------G~~~W~~~~~  105 (238)
T PF13360_consen   37 GRVYVASGDGNLYALDAKTGK--VLWRFDL-PGPISGAPVV--DGGRVYVGTSDGSLYALDAKT------GKVLWSIYLT  105 (238)
T ss_dssp             TEEEEEETTSEEEEEETTTSE--EEEEEEC-SSCGGSGEEE--ETTEEEEEETTSEEEEEETTT------SCEEEEEEE-
T ss_pred             CEEEEEcCCCEEEEEECCCCC--EEEEeec-cccccceeee--cccccccccceeeeEecccCC------cceeeeeccc
Confidence            456666899999999998988  4433333 2222222222  456666667888999999998      8888874 32


Q ss_pred             CC---CCeeEEEEecCCCcEEEEecCCCcEEEEeCCc
Q 021657          184 HS---AAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEK  217 (309)
Q Consensus       184 ~~---~~v~~~~~~~~~~~l~~~~~~dg~i~iwd~~~  217 (309)
                      ..   ..........++..+ +.+..++.|..+|.++
T Consensus       106 ~~~~~~~~~~~~~~~~~~~~-~~~~~~g~l~~~d~~t  141 (238)
T PF13360_consen  106 SSPPAGVRSSSSPAVDGDRL-YVGTSSGKLVALDPKT  141 (238)
T ss_dssp             SSCTCSTB--SEEEEETTEE-EEEETCSEEEEEETTT
T ss_pred             cccccccccccCceEecCEE-EEEeccCcEEEEecCC
Confidence            21   111222333335544 4666699999999987

...

>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]

Probab=97.76  E-value=6.8e-05  Score=64.56  Aligned_cols=112  Identities=15%  Similarity=0.345  Sum_probs=83.8

Q ss_pred             EEEEEecCCCcEEEEEc----CCCeEEEEEcCCCCcceEEEeeccCCceeEEEeccCCCCeEEEEcCCCcEEEEecCCCC
Q 021657           95 EDVTFCPSSAQEFCSVG----DDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLT  170 (309)
Q Consensus        95 ~~~~~~~~~~~~l~s~~----~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~  170 (309)
                      +-..|+|.. .+|+.++    ..|.|.||- .+++.  ... ..-+-.+++++|+| ..-.|+.|-.-|.+.+|...+  
T Consensus        19 ti~SWHPse-PlfAVA~fS~er~GSVtIfa-dtGEP--qr~-Vt~P~hatSLCWHp-e~~vLa~gwe~g~~~v~~~~~--   90 (1416)
T KOG3617|consen   19 TISSWHPSE-PLFAVASFSPERGGSVTIFA-DTGEP--QRD-VTYPVHATSLCWHP-EEFVLAQGWEMGVSDVQKTNT--   90 (1416)
T ss_pred             cccccCCCC-ceeEEEEecCCCCceEEEEe-cCCCC--Ccc-cccceehhhhccCh-HHHHHhhccccceeEEEecCC--
Confidence            345688887 6677665    468888884 45551  111 11233467899999 888999999999999999887  


Q ss_pred             CCCCCCceeeeccCCCCeeEEEEecCCCcEEEEecCCCcEEEEeCCccc
Q 021657          171 SNGVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVG  219 (309)
Q Consensus       171 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~dg~i~iwd~~~~~  219 (309)
                          .+.-.....|..+|..+.|+++|.. ++++..=|.+.+|.....+
T Consensus        91 ----~e~htv~~th~a~i~~l~wS~~G~~-l~t~d~~g~v~lwr~d~~g  134 (1416)
T KOG3617|consen   91 ----TETHTVVETHPAPIQGLDWSHDGTV-LMTLDNPGSVHLWRYDVIG  134 (1416)
T ss_pred             ----ceeeeeccCCCCCceeEEecCCCCe-EEEcCCCceeEEEEeeecc
Confidence                5555555678999999999999996 5599999999999987533

>PRK02888 nitrous-oxide reductase; Validated

Probab=97.72  E-value=0.0027  Score=54.10  Aligned_cols=100  Identities=17%  Similarity=0.236  Sum_probs=68.2

Q ss_pred             CCeEEEEEcCC----CCcceEEEeeccCCceeEEEeccCCCCeEEEEcC-CCcEEEEecCCCCCC------CCCCceeee
Q 021657          113 DSCLILWDARV----GTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSA-DNSVRMFDRRNLTSN------GVGSPINKF  181 (309)
Q Consensus       113 dg~i~iwd~~~----~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~-dg~i~i~d~~~~~~~------~~~~~~~~~  181 (309)
                      ++.|.+.|..+    +. .....+ .-......+.++| +++++++++. +.++.|+|+.+....      .....+.+.
T Consensus       295 gn~V~VID~~t~~~~~~-~v~~yI-PVGKsPHGV~vSP-DGkylyVanklS~tVSVIDv~k~k~~~~~~~~~~~~vvaev  371 (635)
T PRK02888        295 GSKVPVVDGRKAANAGS-ALTRYV-PVPKNPHGVNTSP-DGKYFIANGKLSPTVTVIDVRKLDDLFDGKIKPRDAVVAEP  371 (635)
T ss_pred             CCEEEEEECCccccCCc-ceEEEE-ECCCCccceEECC-CCCEEEEeCCCCCcEEEEEChhhhhhhhccCCccceEEEee
Confidence            57899999887    22 133333 3456678999999 8887766655 899999999883210      001123333


Q ss_pred             ccCCCCeeEEEEecCCCcEEEEecCCCcEEEEeCCc
Q 021657          182 EGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEK  217 (309)
Q Consensus       182 ~~~~~~v~~~~~~~~~~~l~~~~~~dg~i~iwd~~~  217 (309)
                      ....++ ...+|.++|. .+.+-.-|..|..|++..
T Consensus       372 evGlGP-LHTaFDg~G~-aytslf~dsqv~kwn~~~  405 (635)
T PRK02888        372 ELGLGP-LHTAFDGRGN-AYTTLFLDSQIVKWNIEA  405 (635)
T ss_pred             ccCCCc-ceEEECCCCC-EEEeEeecceeEEEehHH
Confidence            333333 4678999987 677888999999999986

>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=97.71  E-value=0.015  Score=47.35  Aligned_cols=155  Identities=14%  Similarity=0.182  Sum_probs=87.0

Q ss_pred             ccCCeEEEEEecCCCcEEEE-EcCC---CeEEEEEcCCCCcceEEEeeccCC---ceeEEEec-cCCCCeEEEEcCCCcE
Q 021657           90 HEDTVEDVTFCPSSAQEFCS-VGDD---SCLILWDARVGTSPVIKVEKAHDA---DLHCVDWN-PLDDNLILTGSADNSV  161 (309)
Q Consensus        90 ~~~~v~~~~~~~~~~~~l~s-~~~d---g~i~iwd~~~~~~~~~~~~~~~~~---~v~~~~~~-~~~~~~l~~~~~dg~i  161 (309)
                      -...+..+.|.+++..+++. ..++   ..+.+.|..++........ ....   .-....+. +.+..++.....+|.-
T Consensus       182 ~~~yl~~v~W~~d~~~l~~~~~nR~q~~~~l~~~d~~tg~~~~~~~e-~~~~Wv~~~~~~~~~~~~~~~~l~~s~~~G~~  260 (353)
T PF00930_consen  182 QDYYLTRVGWSPDGKRLWVQWLNRDQNRLDLVLCDASTGETRVVLEE-TSDGWVDVYDPPHFLGPDGNEFLWISERDGYR  260 (353)
T ss_dssp             SSEEEEEEEEEETTEEEEEEEEETTSTEEEEEEEEECTTTCEEEEEE-ESSSSSSSSSEEEE-TTTSSEEEEEEETTSSE
T ss_pred             CccCcccceecCCCcEEEEEEcccCCCEEEEEEEECCCCceeEEEEe-cCCcceeeecccccccCCCCEEEEEEEcCCCc
Confidence            45578899999998323332 3333   3466778877664333322 2222   22355554 5355666666778866


Q ss_pred             EEEecCCCCCCCCCCceeeeccCCCCeeE-EEEecCCCcEEEEecCCC--cEEEEeCCcc-cccccCCCCCcCCCCceee
Q 021657          162 RMFDRRNLTSNGVGSPINKFEGHSAAVLC-VQWSPDKSSVFGSSAEDG--LLNIWDYEKV-GKKVEQGPRTTNYPAGLFF  237 (309)
Q Consensus       162 ~i~d~~~~~~~~~~~~~~~~~~~~~~v~~-~~~~~~~~~l~~~~~~dg--~i~iwd~~~~-~~~~~~~~~~~~~~~~~~~  237 (309)
                      +||-+...     +.....+....-.|.. +.+++++..++.++..++  .-.+|.+... +.              ...
T Consensus       261 hly~~~~~-----~~~~~~lT~G~~~V~~i~~~d~~~~~iyf~a~~~~p~~r~lY~v~~~~~~--------------~~~  321 (353)
T PF00930_consen  261 HLYLYDLD-----GGKPRQLTSGDWEVTSILGWDEDNNRIYFTANGDNPGERHLYRVSLDSGG--------------EPK  321 (353)
T ss_dssp             EEEEEETT-----SSEEEESS-SSS-EEEEEEEECTSSEEEEEESSGGTTSBEEEEEETTETT--------------EEE
T ss_pred             EEEEEccc-----ccceeccccCceeecccceEcCCCCEEEEEecCCCCCceEEEEEEeCCCC--------------CeE
Confidence            65544432     3335566655666744 778899887777777633  4455555442 11              112


Q ss_pred             eecCCCcceeeEEEccCCCeEEEEecC
Q 021657          238 QHAGHRDKVVDFHWNASDPWTVVSVSD  264 (309)
Q Consensus       238 ~~~~~~~~v~~~~~~~~~~~~~~s~s~  264 (309)
                      .+......-..+.|+|++.+++.++|.
T Consensus       322 ~LT~~~~~~~~~~~Spdg~y~v~~~s~  348 (353)
T PF00930_consen  322 CLTCEDGDHYSASFSPDGKYYVDTYSG  348 (353)
T ss_dssp             ESSTTSSTTEEEEE-TTSSEEEEEEES
T ss_pred             eccCCCCCceEEEECCCCCEEEEEEcC
Confidence            222222222689999999999987764

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....

>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=97.65  E-value=0.0024  Score=53.12  Aligned_cols=143  Identities=10%  Similarity=0.137  Sum_probs=75.9

Q ss_pred             cccCCeEEEEEecCCCcEEEEEcCCCeEEEEEcCCCCcceEEEeeccCCceeEEEeccCCCCeEEEEcCCCcEEEE-ecC
Q 021657           89 GHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMF-DRR  167 (309)
Q Consensus        89 ~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~-d~~  167 (309)
                      ...-....+.++|+| +.++. +.||...|+.....+  ...     .+.-...+|.+ .+ .+|+-...+.|.++ ++.
T Consensus        30 ~~~~~p~~ls~npng-r~v~V-~g~geY~iyt~~~~r--~k~-----~G~g~~~vw~~-~n-~yAv~~~~~~I~I~kn~~   98 (443)
T PF04053_consen   30 SCEIYPQSLSHNPNG-RFVLV-CGDGEYEIYTALAWR--NKA-----FGSGLSFVWSS-RN-RYAVLESSSTIKIYKNFK   98 (443)
T ss_dssp             E-SS--SEEEE-TTS-SEEEE-EETTEEEEEETTTTE--EEE-----EEE-SEEEE-T-SS-EEEEE-TTS-EEEEETTE
T ss_pred             CCCcCCeeEEECCCC-CEEEE-EcCCEEEEEEccCCc--ccc-----cCceeEEEEec-Cc-cEEEEECCCeEEEEEcCc
Confidence            344557899999998 65555 567888888843322  111     23456788987 44 46666668889996 333


Q ss_pred             CCCCCCCCCceeeeccCCCCeeEEEEecCCCcEEEEecCCCcEEEEeCCcccccccCCCCCcCCCCceeeeecCCCccee
Q 021657          168 NLTSNGVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKVV  247 (309)
Q Consensus       168 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~  247 (309)
                      .       .....+.. ...+..|-.   |.. |...+ ++.|.+||...               ...+.....  .+|.
T Consensus        99 ~-------~~~k~i~~-~~~~~~If~---G~L-L~~~~-~~~i~~yDw~~---------------~~~i~~i~v--~~vk  148 (443)
T PF04053_consen   99 N-------EVVKSIKL-PFSVEKIFG---GNL-LGVKS-SDFICFYDWET---------------GKLIRRIDV--SAVK  148 (443)
T ss_dssp             E--------TT------SS-EEEEE----SSS-EEEEE-TTEEEEE-TTT-----------------EEEEESS---E-E
T ss_pred             c-------ccceEEcC-CcccceEEc---CcE-EEEEC-CCCEEEEEhhH---------------cceeeEEec--CCCc
Confidence            2       22223332 123444433   774 54444 45899999997               344444443  2489


Q ss_pred             eEEEccCCCeEEEEecCCCCCCCCCCeEEEEEcc
Q 021657          248 DFHWNASDPWTVVSVSDDCDSTGGGGTLQIWRMS  281 (309)
Q Consensus       248 ~~~~~~~~~~~~~s~s~d~~s~~~dg~v~vw~~~  281 (309)
                      .+.|++++.++++.+.         ..+.+++.+
T Consensus       149 ~V~Ws~~g~~val~t~---------~~i~il~~~  173 (443)
T PF04053_consen  149 YVIWSDDGELVALVTK---------DSIYILKYN  173 (443)
T ss_dssp             EEEE-TTSSEEEEE-S----------SEEEEEE-
T ss_pred             EEEEECCCCEEEEEeC---------CeEEEEEec
Confidence            9999999887665543         378898876

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.

>KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.65  E-value=0.0013  Score=53.95  Aligned_cols=143  Identities=18%  Similarity=0.204  Sum_probs=98.0

Q ss_pred             cEEEEEcCCCeEEEEEcCCCCcceEEEeeccCCceeEEEeccCCC-------CeEEEEcCCCcEEEEecCCCCCCCCCCc
Q 021657          105 QEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDD-------NLILTGSADNSVRMFDRRNLTSNGVGSP  177 (309)
Q Consensus       105 ~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-------~~l~~~~~dg~i~i~d~~~~~~~~~~~~  177 (309)
                      -+|.++.....++-.|++.++  ++....-+.. |+-+.+.| +.       ..-+.|-.+..|.-||+|-..    ...
T Consensus       347 lil~~~~~~~~l~klDIE~GK--IVeEWk~~~d-i~mv~~t~-d~K~~Ql~~e~TlvGLs~n~vfriDpRv~~----~~k  418 (644)
T KOG2395|consen  347 LILMDGGEQDKLYKLDIERGK--IVEEWKFEDD-INMVDITP-DFKFAQLTSEQTLVGLSDNSVFRIDPRVQG----KNK  418 (644)
T ss_pred             eEeeCCCCcCcceeeecccce--eeeEeeccCC-cceeeccC-CcchhcccccccEEeecCCceEEecccccC----cce
Confidence            345555566678888999888  7777776665 77777776 32       233556678889999999642    112


Q ss_pred             eeeecc----CCCCeeEEEEecCCCcEEEEecCCCcEEEEeCCcccccccCCCCCcCCCCceeeeecCCCcceeeEEEcc
Q 021657          178 INKFEG----HSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKVVDFHWNA  253 (309)
Q Consensus       178 ~~~~~~----~~~~v~~~~~~~~~~~l~~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~  253 (309)
                      +..-++    .+....|.+-..+|.  +|+|+.+|.|++||--.               ......+.+-..+|..+..+-
T Consensus       419 l~~~q~kqy~~k~nFsc~aTT~sG~--IvvgS~~GdIRLYdri~---------------~~AKTAlPgLG~~I~hVdvta  481 (644)
T KOG2395|consen  419 LAVVQSKQYSTKNNFSCFATTESGY--IVVGSLKGDIRLYDRIG---------------RRAKTALPGLGDAIKHVDVTA  481 (644)
T ss_pred             eeeeeccccccccccceeeecCCce--EEEeecCCcEEeehhhh---------------hhhhhcccccCCceeeEEeec
Confidence            222222    234567777777775  67999999999999733               122335677788999999999


Q ss_pred             CCCeEEEEecCCCCCCCCCCeEEEEEcc
Q 021657          254 SDPWTVVSVSDDCDSTGGGGTLQIWRMS  281 (309)
Q Consensus       254 ~~~~~~~s~s~d~~s~~~dg~v~vw~~~  281 (309)
                      +|.+++++|-         ..+.+-++.
T Consensus       482 dGKwil~Tc~---------tyLlLi~t~  500 (644)
T KOG2395|consen  482 DGKWILATCK---------TYLLLIDTL  500 (644)
T ss_pred             cCcEEEEecc---------cEEEEEEEe
Confidence            9999998764         456666654

>KOG3630 consensus Nuclear pore complex, Nup214/CAN component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=97.63  E-value=0.0012  Score=59.11  Aligned_cols=158  Identities=9%  Similarity=0.073  Sum_probs=100.1

Q ss_pred             ccCCCCCcceEEEEECCCCCEEEE--ecCCCcEEEEeCCccccccccCCccccccCCCCceeecCCCCCCCCcccCCCCC
Q 021657            3 ILTGHQDNAEFALAMCPTEPYVLS--GGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPS   80 (309)
Q Consensus         3 ~l~~H~~~~V~~~~~~~~~~~l~t--~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (309)
                      +++-|..-+|..+...+|+...+.  .+.+-.|..||+++-......                                +
T Consensus        94 t~~v~k~~pi~~~v~~~D~t~s~v~~tsng~~v~~fD~~~fs~s~~~--------------------------------~  141 (1405)
T KOG3630|consen   94 TFKVEKEIPIVIFVCFHDATDSVVVSTSNGEAVYSFDLEEFSESRYE--------------------------------T  141 (1405)
T ss_pred             ceeeeccccceEEEeccCCceEEEEEecCCceEEEEehHhhhhhhhh--------------------------------h
Confidence            445566656667777778766443  333447888998753111100                                0


Q ss_pred             cCcc---cccccccCCeEEEEEecCCCcEEEEEcCCCeEEEEEcCCCCcceEEEeeccCCceeEEEeccCCCCeEEEEcC
Q 021657           81 VGPR---GIYNGHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSA  157 (309)
Q Consensus        81 ~~~~---~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~  157 (309)
                      ..++   +.......-..++.|+|.=....+.+..|+.|++..+..... .... ..-....++++|+| .|..+++|-.
T Consensus       142 ~~pl~~s~ts~ek~vf~~~~~wnP~vp~n~av~l~dlsl~V~~~~~~~~-~v~s-~p~t~~~Tav~WSp-rGKQl~iG~n  218 (1405)
T KOG3630|consen  142 TVPLKNSATSFEKPVFQLKNVWNPLVPLNSAVDLSDLSLRVKSTKQLAQ-NVTS-FPVTNSQTAVLWSP-RGKQLFIGRN  218 (1405)
T ss_pred             ccccccccchhccccccccccccCCccchhhhhccccchhhhhhhhhhh-hhcc-cCcccceeeEEecc-ccceeeEecC
Confidence            1111   111222344567889987666788888999999988765442 1222 23456789999999 9999999999


Q ss_pred             CCcEEEEecCCCCCCCCCCceeeecc----CCCCeeEEEEecCCCcEEE
Q 021657          158 DNSVRMFDRRNLTSNGVGSPINKFEG----HSAAVLCVQWSPDKSSVFG  202 (309)
Q Consensus       158 dg~i~i~d~~~~~~~~~~~~~~~~~~----~~~~v~~~~~~~~~~~l~~  202 (309)
                      .|++.-|...-       +....+.+    ....|.+|+|-....++++
T Consensus       219 nGt~vQy~P~l-------eik~~ip~Pp~~e~yrvl~v~Wl~t~eflvv  260 (1405)
T KOG3630|consen  219 NGTEVQYEPSL-------EIKSEIPEPPVEENYRVLSVTWLSTQEFLVV  260 (1405)
T ss_pred             CCeEEEeeccc-------ceeecccCCCcCCCcceeEEEEecceeEEEE
Confidence            99999887652       32333322    1467999999988876543

>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]

Probab=97.61  E-value=0.017  Score=45.73  Aligned_cols=111  Identities=12%  Similarity=0.180  Sum_probs=62.0

Q ss_pred             eEEEEEecCCCcEEEEEcCCCeEEEEEcCCCCcceEEEee----cc-CCceeEEEeccCCCCeEEEEcC-----------
Q 021657           94 VEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPVIKVEK----AH-DADLHCVDWNPLDDNLILTGSA-----------  157 (309)
Q Consensus        94 v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~----~~-~~~v~~~~~~~~~~~~l~~~~~-----------  157 (309)
                      +.++..-..+ ..|+++.. | +.+++..++..  ...+.    +. ....+.....| ++.+.+....           
T Consensus        68 ~~~~~~~d~~-g~Lv~~~~-g-~~~~~~~~~~~--~t~~~~~~~~~~~~r~ND~~v~p-dG~~wfgt~~~~~~~~~~~~~  141 (307)
T COG3386          68 FSSGALIDAG-GRLIACEH-G-VRLLDPDTGGK--ITLLAEPEDGLPLNRPNDGVVDP-DGRIWFGDMGYFDLGKSEERP  141 (307)
T ss_pred             cccceeecCC-CeEEEEcc-c-cEEEeccCCce--eEEeccccCCCCcCCCCceeEcC-CCCEEEeCCCccccCccccCC
Confidence            3444433333 34555433 3 56677655552  11111    11 13445677778 6665555433           


Q ss_pred             CCcEEEEecCCCCCCCCCCceeeeccCCCCeeEEEEecCCCcEEEEecCCCcEEEEeCCc
Q 021657          158 DNSVRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEK  217 (309)
Q Consensus       158 dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~dg~i~iwd~~~  217 (309)
                      -|.++-+|. .      +..++.+..+-..-+.|+||||++.++++=+..+.|.-|++..
T Consensus       142 ~G~lyr~~p-~------g~~~~l~~~~~~~~NGla~SpDg~tly~aDT~~~~i~r~~~d~  194 (307)
T COG3386         142 TGSLYRVDP-D------GGVVRLLDDDLTIPNGLAFSPDGKTLYVADTPANRIHRYDLDP  194 (307)
T ss_pred             cceEEEEcC-C------CCEEEeecCcEEecCceEECCCCCEEEEEeCCCCeEEEEecCc
Confidence            122333332 2      4444444444556688999999998887777778899888873

>KOG2444 consensus WD40 repeat protein [General function prediction only]

Probab=97.52  E-value=0.00025  Score=51.59  Aligned_cols=101  Identities=14%  Similarity=0.139  Sum_probs=58.5

Q ss_pred             EEEEEcCCCeEEEEEcCCCCcceEEEeeccCCceeEEEeccCCCCeEEEEcCCCcEEEEecCCCCCCCCCCceeeeccCC
Q 021657          106 EFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGHS  185 (309)
Q Consensus       106 ~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~  185 (309)
                      .+...+.||.|+-++++..+.... ...-+...   +.... .+..+++|+.+|.|.+|.....     +.....+....
T Consensus        32 ~l~~~sa~~~v~~~~~~k~k~s~r-se~~~~e~---~~v~~-~~~~~~vG~~dg~v~~~n~n~~-----g~~~d~~~s~~  101 (238)
T KOG2444|consen   32 LLRATSADGLVRERKVRKHKESCR-SERFIDEG---QRVVT-ASAKLMVGTSDGAVYVFNWNLE-----GAHSDRVCSGE  101 (238)
T ss_pred             hhccccCCcccccchhhhhhhhhh-hhhhhhcc---eeecc-cCceEEeecccceEEEecCCcc-----chHHHhhhccc
Confidence            345557889999888876552111 11112222   11122 5678999999999999987741     22222222222


Q ss_pred             CCeeE-EEEecCCCcEEEEecCCCcEEEEeCCc
Q 021657          186 AAVLC-VQWSPDKSSVFGSSAEDGLLNIWDYEK  217 (309)
Q Consensus       186 ~~v~~-~~~~~~~~~l~~~~~~dg~i~iwd~~~  217 (309)
                      ..|.+ |.-..++. +..+++.||.|+.|++..
T Consensus       102 e~i~~~Ip~~~~~~-~~c~~~~dg~ir~~n~~p  133 (238)
T KOG2444|consen  102 ESIDLGIPNGRDSS-LGCVGAQDGRIRACNIKP  133 (238)
T ss_pred             ccceeccccccccc-eeEEeccCCceeeecccc
Confidence            33322 22223333 567899999999999876

>KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.49  E-value=0.00087  Score=59.52  Aligned_cols=64  Identities=22%  Similarity=0.318  Sum_probs=51.0

Q ss_pred             CCCeEEEEcCCCcEEEEecCCCCCCCCCCceeeeccCCCCeeEEEEecCCCcEEEEecCCCcEEEEeCCc
Q 021657          148 DDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEK  217 (309)
Q Consensus       148 ~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~dg~i~iwd~~~  217 (309)
                      -+..++.|+..|.+-..|++..     ..+...-....++|++++|+.+|.. ++.|-.+|.|.+||+..
T Consensus        98 ~~~~ivi~Ts~ghvl~~d~~~n-----L~~~~~ne~v~~~Vtsvafn~dg~~-l~~G~~~G~V~v~D~~~  161 (1206)
T KOG2079|consen   98 VVVPIVIGTSHGHVLLSDMTGN-----LGPLHQNERVQGPVTSVAFNQDGSL-LLAGLGDGHVTVWDMHR  161 (1206)
T ss_pred             eeeeEEEEcCchhhhhhhhhcc-----cchhhcCCccCCcceeeEecCCCce-eccccCCCcEEEEEccC
Confidence            5667899999999999998752     2223333445689999999999995 56888999999999988

>KOG2444 consensus WD40 repeat protein [General function prediction only]

Probab=97.49  E-value=0.00092  Score=48.80  Aligned_cols=61  Identities=11%  Similarity=0.117  Sum_probs=42.2

Q ss_pred             cEEEEEcCCCeEEEEEcCCCCcceEEEeeccC-CceeEEEeccCCCCeEEEE--cCCCcEEEEecCC
Q 021657          105 QEFCSVGDDSCLILWDARVGTSPVIKVEKAHD-ADLHCVDWNPLDDNLILTG--SADNSVRMFDRRN  168 (309)
Q Consensus       105 ~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~-~~v~~~~~~~~~~~~l~~~--~~dg~i~i~d~~~  168 (309)
                      .+..+++.||.|+.|++.-.+  .......|. .++....... .+..+++.  +.|..++.|++..
T Consensus       115 ~~~c~~~~dg~ir~~n~~p~k--~~g~~g~h~~~~~e~~ivv~-sd~~i~~a~~S~d~~~k~W~ve~  178 (238)
T KOG2444|consen  115 SLGCVGAQDGRIRACNIKPNK--VLGYVGQHNFESGEELIVVG-SDEFLKIADTSHDRVLKKWNVEK  178 (238)
T ss_pred             ceeEEeccCCceeeeccccCc--eeeeeccccCCCcceeEEec-CCceEEeeccccchhhhhcchhh
Confidence            588999999999999987766  455555565 4454444444 56666666  6667777777654

>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit

Probab=97.49  E-value=0.008  Score=48.31  Aligned_cols=146  Identities=8%  Similarity=0.070  Sum_probs=84.1

Q ss_pred             CcEEEEEcC----------CCeEEEEEcCCC----CcceEEEeeccCCceeEEEeccCCCCeEEEEcCCCcEEEEecCCC
Q 021657          104 AQEFCSVGD----------DSCLILWDARVG----TSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNL  169 (309)
Q Consensus       104 ~~~l~s~~~----------dg~i~iwd~~~~----~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~  169 (309)
                      ..+|+.|..          .|.|.++++...    ...........+++|++++--  ++. |+++ ..+.|.+|++.. 
T Consensus        42 ~~~ivVGT~~~~~~~~~~~~Gri~v~~i~~~~~~~~~l~~i~~~~~~g~V~ai~~~--~~~-lv~~-~g~~l~v~~l~~-  116 (321)
T PF03178_consen   42 KEYIVVGTAFNYGEDPEPSSGRILVFEISESPENNFKLKLIHSTEVKGPVTAICSF--NGR-LVVA-VGNKLYVYDLDN-  116 (321)
T ss_dssp             SEEEEEEEEE--TTSSS-S-EEEEEEEECSS-----EEEEEEEEEESS-EEEEEEE--TTE-EEEE-ETTEEEEEEEET-
T ss_pred             cCEEEEEecccccccccccCcEEEEEEEEcccccceEEEEEEEEeecCcceEhhhh--CCE-EEEe-ecCEEEEEEccC-
Confidence            367776653          299999999874    111112223457889998865  344 4444 357899999998 


Q ss_pred             CCCCCCCceeeeccC--CCCeeEEEEecCCCcEEEEecCCCcEEEEeCCcccccccCCCCCcCCCCceeeeecCCCccee
Q 021657          170 TSNGVGSPINKFEGH--SAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKVV  247 (309)
Q Consensus       170 ~~~~~~~~~~~~~~~--~~~v~~~~~~~~~~~l~~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~  247 (309)
                           .+.+......  ...+.++...  +.+ ++.|..-..+.++..+......            ...........++
T Consensus       117 -----~~~l~~~~~~~~~~~i~sl~~~--~~~-I~vgD~~~sv~~~~~~~~~~~l------------~~va~d~~~~~v~  176 (321)
T PF03178_consen  117 -----SKTLLKKAFYDSPFYITSLSVF--KNY-ILVGDAMKSVSLLRYDEENNKL------------ILVARDYQPRWVT  176 (321)
T ss_dssp             -----TSSEEEEEEE-BSSSEEEEEEE--TTE-EEEEESSSSEEEEEEETTTE-E------------EEEEEESS-BEEE
T ss_pred             -----cccchhhheecceEEEEEEecc--ccE-EEEEEcccCEEEEEEEccCCEE------------EEEEecCCCccEE
Confidence                 4422222222  2355555554  444 5588877888888665422211            1122233456789


Q ss_pred             eEEEccCCCeEEEEecCCCCCCCCCCeEEEEEccc
Q 021657          248 DFHWNASDPWTVVSVSDDCDSTGGGGTLQIWRMSD  282 (309)
Q Consensus       248 ~~~~~~~~~~~~~s~s~d~~s~~~dg~v~vw~~~~  282 (309)
                      ++.+-+++.. ++.+       ..+|.+.++....
T Consensus       177 ~~~~l~d~~~-~i~~-------D~~gnl~~l~~~~  203 (321)
T PF03178_consen  177 AAEFLVDEDT-IIVG-------DKDGNLFVLRYNP  203 (321)
T ss_dssp             EEEEE-SSSE-EEEE-------ETTSEEEEEEE-S
T ss_pred             EEEEecCCcE-EEEE-------cCCCeEEEEEECC
Confidence            9999866654 4433       3449999999974

CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....

>KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.49  E-value=0.0015  Score=58.19  Aligned_cols=71  Identities=20%  Similarity=0.303  Sum_probs=53.0

Q ss_pred             ccCCeEEEEEecCCCcEEEEEcCCCeEEEEEcCCCCcceEEEeeccCCceeEEE---eccCCCCeEEEEcCCCcEEEEec
Q 021657           90 HEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVD---WNPLDDNLILTGSADNSVRMFDR  166 (309)
Q Consensus        90 ~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~---~~~~~~~~l~~~~~dg~i~i~d~  166 (309)
                      -.++|++++|+.+| .+++.|-.+|.|.+||...++  ..+.+..|..+.+.+-   +.. .+..++++...|.  +|.+
T Consensus       129 v~~~Vtsvafn~dg-~~l~~G~~~G~V~v~D~~~~k--~l~~i~e~~ap~t~vi~v~~t~-~nS~llt~D~~Gs--f~~l  202 (1206)
T KOG2079|consen  129 VQGPVTSVAFNQDG-SLLLAGLGDGHVTVWDMHRAK--ILKVITEHGAPVTGVIFVGRTS-QNSKLLTSDTGGS--FWKL  202 (1206)
T ss_pred             cCCcceeeEecCCC-ceeccccCCCcEEEEEccCCc--ceeeeeecCCccceEEEEEEeC-CCcEEEEccCCCc--eEEE
Confidence            46799999999998 889999999999999998777  5666666665554443   344 4457888877776  5544

>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain

Probab=97.41  E-value=0.00064  Score=36.61  Aligned_cols=30  Identities=20%  Similarity=0.474  Sum_probs=27.9

Q ss_pred             cceEEEEECCCCCEEEEecCCCcEEEEeCC
Q 021657           10 NAEFALAMCPTEPYVLSGGKDKSVVLWSIQ   39 (309)
Q Consensus        10 ~~V~~~~~~~~~~~l~t~~~dg~i~vwd~~   39 (309)
                      ..|.+++|+|...+||.|+.||.|.++.+.
T Consensus        12 ~~v~~~~w~P~mdLiA~~t~~g~v~v~Rl~   41 (47)
T PF12894_consen   12 SRVSCMSWCPTMDLIALGTEDGEVLVYRLN   41 (47)
T ss_pred             CcEEEEEECCCCCEEEEEECCCeEEEEECC
Confidence            369999999999999999999999999984

>PRK13616 lipoprotein LpqB; Provisional

Probab=97.38  E-value=0.037  Score=48.13  Aligned_cols=141  Identities=15%  Similarity=0.144  Sum_probs=76.3

Q ss_pred             CCeEEEEEecCCCcEEEEEc-----CCC--eEEEEEcCCCCcceEEEeeccCCceeEEEeccCCCCeEEEEcCC------
Q 021657           92 DTVEDVTFCPSSAQEFCSVG-----DDS--CLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSAD------  158 (309)
Q Consensus        92 ~~v~~~~~~~~~~~~l~s~~-----~dg--~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d------  158 (309)
                      ..+...+.+|+|....++..     .|.  .|.+++.. +.  ......+  ...+.-.|+| ++..+++....      
T Consensus       350 ~~vsspaiSpdG~~vA~v~~~~~~~~d~~s~Lwv~~~g-g~--~~~lt~g--~~~t~PsWsp-DG~~lw~v~dg~~~~~v  423 (591)
T PRK13616        350 GNITSAALSRSGRQVAAVVTLGRGAPDPASSLWVGPLG-GV--AVQVLEG--HSLTRPSWSL-DADAVWVVVDGNTVVRV  423 (591)
T ss_pred             cCcccceECCCCCEEEEEEeecCCCCCcceEEEEEeCC-Cc--ceeeecC--CCCCCceECC-CCCceEEEecCcceEEE
Confidence            46788899999955544442     243  45555642 22  1222222  2378889999 87766665432      


Q ss_pred             ------CcEEEEecCCCCCCCCCCceeeeccCCCCeeEEEEecCCCcEEEEecCCCcEEEEeCCc--ccccccCCCCCcC
Q 021657          159 ------NSVRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEK--VGKKVEQGPRTTN  230 (309)
Q Consensus       159 ------g~i~i~d~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~dg~i~iwd~~~--~~~~~~~~~~~~~  230 (309)
                            +.+.+.+++.      +....   .....|..+.|+|||.++++..  ++.|++=-+..  .+. ...      
T Consensus       424 ~~~~~~gql~~~~vd~------ge~~~---~~~g~Issl~wSpDG~RiA~i~--~g~v~Va~Vvr~~~G~-~~l------  485 (591)
T PRK13616        424 IRDPATGQLARTPVDA------SAVAS---RVPGPISELQLSRDGVRAAMII--GGKVYLAVVEQTEDGQ-YAL------  485 (591)
T ss_pred             eccCCCceEEEEeccC------chhhh---ccCCCcCeEEECCCCCEEEEEE--CCEEEEEEEEeCCCCc-eee------
Confidence                  2333334433      22222   2345799999999999866554  47777633222  121 000      


Q ss_pred             CCCceeeeecCCCcceeeEEEccCCCeE
Q 021657          231 YPAGLFFQHAGHRDKVVDFHWNASDPWT  258 (309)
Q Consensus       231 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~  258 (309)
                        ..+.....+-...+.++.|.+++..+
T Consensus       486 --~~~~~l~~~l~~~~~~l~W~~~~~L~  511 (591)
T PRK13616        486 --TNPREVGPGLGDTAVSLDWRTGDSLV  511 (591)
T ss_pred             --cccEEeecccCCccccceEecCCEEE
Confidence              00111112223346889999977743

>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex

Probab=97.37  E-value=0.059  Score=44.86  Aligned_cols=32  Identities=13%  Similarity=0.167  Sum_probs=26.6

Q ss_pred             CCCeeEEEEecCCCcEEEEecCCCcEEEEeCCc
Q 021657          185 SAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEK  217 (309)
Q Consensus       185 ~~~v~~~~~~~~~~~l~~~~~~dg~i~iwd~~~  217 (309)
                      .+++..|++||++++ +|.-..+|.+.+...+.
T Consensus       216 ~~~i~~iavSpng~~-iAl~t~~g~l~v~ssDf  247 (410)
T PF04841_consen  216 DGPIIKIAVSPNGKF-IALFTDSGNLWVVSSDF  247 (410)
T ss_pred             CCCeEEEEECCCCCE-EEEEECCCCEEEEECcc
Confidence            468999999999996 67778889998887655

Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm

>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]

Probab=97.34  E-value=0.039  Score=41.55  Aligned_cols=82  Identities=15%  Similarity=0.054  Sum_probs=57.9

Q ss_pred             cEEEEEcCCCeEEEEEcCCCCcceEEEeeccCCceeEEEeccCCCCeEEEEcCCCcEEEEecCCCCCCCCCCceeeeccC
Q 021657          105 QEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGH  184 (309)
Q Consensus       105 ~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~  184 (309)
                      .+++.|+..|.+++.+..++.  ....+.....--......+ ++..+..|+.|++.+..|.++      ...+.+.+..
T Consensus        64 dfVV~GCy~g~lYfl~~~tGs--~~w~f~~~~~vk~~a~~d~-~~glIycgshd~~~yalD~~~------~~cVykskcg  134 (354)
T KOG4649|consen   64 DFVVLGCYSGGLYFLCVKTGS--QIWNFVILETVKVRAQCDF-DGGLIYCGSHDGNFYALDPKT------YGCVYKSKCG  134 (354)
T ss_pred             CEEEEEEccCcEEEEEecchh--heeeeeehhhhccceEEcC-CCceEEEecCCCcEEEecccc------cceEEecccC
Confidence            568899999999999999997  3333332222112233466 899999999999999999998      7777777655


Q ss_pred             CCCeeEEEEec
Q 021657          185 SAAVLCVQWSP  195 (309)
Q Consensus       185 ~~~v~~~~~~~  195 (309)
                      .+...+-++.|
T Consensus       135 G~~f~sP~i~~  145 (354)
T KOG4649|consen  135 GGTFVSPVIAP  145 (354)
T ss_pred             CceeccceecC
Confidence            44444444555

>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain

Probab=97.28  E-value=0.0013  Score=35.49  Aligned_cols=32  Identities=25%  Similarity=0.596  Sum_probs=28.7

Q ss_pred             cCCceeEEEeccCCCCeEEEEcCCCcEEEEecC
Q 021657          135 HDADLHCVDWNPLDDNLILTGSADNSVRMFDRR  167 (309)
Q Consensus       135 ~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~  167 (309)
                      ....|.+++|+| ...++|.++.+|.|.+|.+.
T Consensus        10 l~~~v~~~~w~P-~mdLiA~~t~~g~v~v~Rl~   41 (47)
T PF12894_consen   10 LPSRVSCMSWCP-TMDLIALGTEDGEVLVYRLN   41 (47)
T ss_pred             CCCcEEEEEECC-CCCEEEEEECCCeEEEEECC
Confidence            345799999999 99999999999999999983

>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases

Probab=97.28  E-value=0.035  Score=47.48  Aligned_cols=152  Identities=15%  Similarity=0.098  Sum_probs=80.7

Q ss_pred             CEEEEecCCCcEEEEeCCccccccccCCccc--------cccCCCCceeecCCC-------CCCCCcccCCCCCcCcccc
Q 021657           22 PYVLSGGKDKSVVLWSIQDHITSSATDPATA--------KSAGSSGSIIKQSPK-------PGDGNDKAADGPSVGPRGI   86 (309)
Q Consensus        22 ~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~   86 (309)
                      ..++.++.+|.|.-+|.+++...........        ..+............       ...+.+...+..+++.+-.
T Consensus       111 ~~V~v~~~~g~v~AlD~~TG~~~W~~~~~~~~~~~~~i~ssP~v~~~~v~vg~~~~~~~~~~~~g~v~alD~~TG~~~W~  190 (488)
T cd00216         111 RKVFFGTFDGRLVALDAETGKQVWKFGNNDQVPPGYTMTGAPTIVKKLVIIGSSGAEFFACGVRGALRAYDVETGKLLWR  190 (488)
T ss_pred             CeEEEecCCCeEEEEECCCCCEeeeecCCCCcCcceEecCCCEEECCEEEEeccccccccCCCCcEEEEEECCCCceeeE
Confidence            6777888899999999998865544433211        001111111111111       1234556666666665544


Q ss_pred             cccccC--------------------Ce-EEEEEecCCCcEEEEEcCCC------------------eEEEEEcCCCCcc
Q 021657           87 YNGHED--------------------TV-EDVTFCPSSAQEFCSVGDDS------------------CLILWDARVGTSP  127 (309)
Q Consensus        87 ~~~~~~--------------------~v-~~~~~~~~~~~~l~s~~~dg------------------~i~iwd~~~~~~~  127 (309)
                      +.....                    .+ ....+.+.+ .+++.++.++                  .|.-.|..+++. 
T Consensus       191 ~~~~~~~~~~~~~~~~~~~~~~~~g~~vw~~pa~d~~~-g~V~vg~~~g~~~~~~~~~~~~~~~~~~~l~Ald~~tG~~-  268 (488)
T cd00216         191 FYTTEPDPNAFPTWGPDRQMWGPGGGTSWASPTYDPKT-NLVYVGTGNGSPWNWGGRRTPGDNLYTDSIVALDADTGKV-  268 (488)
T ss_pred             eeccCCCcCCCCCCCCCcceecCCCCCccCCeeEeCCC-CEEEEECCCCCCCccCCccCCCCCCceeeEEEEcCCCCCE-
Confidence            332110                    11 123344444 4566666554                  788889988883 


Q ss_pred             eEEEee--ccCC----ceeEEEec---cCCCC---eEEEEcCCCcEEEEecCCCCCCCCCCceeeec
Q 021657          128 VIKVEK--AHDA----DLHCVDWN---PLDDN---LILTGSADNSVRMFDRRNLTSNGVGSPINKFE  182 (309)
Q Consensus       128 ~~~~~~--~~~~----~v~~~~~~---~~~~~---~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~  182 (309)
                       .-...  .+..    ......+.   ..++.   .++.++.+|.+..+|.++      ++.+....
T Consensus       269 -~W~~~~~~~~~~~~~~~s~p~~~~~~~~~g~~~~~V~~g~~~G~l~ald~~t------G~~~W~~~  328 (488)
T cd00216         269 -KWFYQTTPHDLWDYDGPNQPSLADIKPKDGKPVPAIVHAPKNGFFYVLDRTT------GKLISARP  328 (488)
T ss_pred             -EEEeeCCCCCCcccccCCCCeEEeccccCCCeeEEEEEECCCceEEEEECCC------CcEeeEeE
Confidence             32221  1110    00011111   01232   678888999999999999      88887664

The alignment model contains an 8-bladed beta-propeller.

>PHA02713 hypothetical protein; Provisional

Probab=97.27  E-value=0.043  Score=47.67  Aligned_cols=103  Identities=8%  Similarity=0.036  Sum_probs=53.7

Q ss_pred             cEEEEEcCCC-----eEEEEEcCCCCcceEEEeeccCCceeEEEeccCCCCeEEEEcCCC--------------------
Q 021657          105 QEFCSVGDDS-----CLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADN--------------------  159 (309)
Q Consensus       105 ~~l~s~~~dg-----~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg--------------------  159 (309)
                      .+.+.||.++     .+..||..+.++.....+.........+.+   ++...+.|+.++                    
T Consensus       353 ~IYviGG~~~~~~~~sve~Ydp~~~~W~~~~~mp~~r~~~~~~~~---~g~IYviGG~~~~~~~~~~~~~~~~~~~~~~~  429 (557)
T PHA02713        353 TIYAIGGQNGTNVERTIECYTMGDDKWKMLPDMPIALSSYGMCVL---DQYIYIIGGRTEHIDYTSVHHMNSIDMEEDTH  429 (557)
T ss_pred             EEEEECCcCCCCCCceEEEEECCCCeEEECCCCCcccccccEEEE---CCEEEEEeCCCccccccccccccccccccccc
Confidence            7778887654     478899887764332222221222222222   677888887653                    


Q ss_pred             ---cEEEEecCCCCCCCCCCceeeeccCCCCeeEEEEecCCCcEEEEecCCC------cEEEEeCCc
Q 021657          160 ---SVRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAEDG------LLNIWDYEK  217 (309)
Q Consensus       160 ---~i~i~d~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~dg------~i~iwd~~~  217 (309)
                         .+..||.++..    +..+..+....... +++. -++. +++.|+.++      .+..||..+
T Consensus       430 ~~~~ve~YDP~td~----W~~v~~m~~~r~~~-~~~~-~~~~-IYv~GG~~~~~~~~~~ve~Ydp~~  489 (557)
T PHA02713        430 SSNKVIRYDTVNNI----WETLPNFWTGTIRP-GVVS-HKDD-IYVVCDIKDEKNVKTCIFRYNTNT  489 (557)
T ss_pred             ccceEEEECCCCCe----EeecCCCCcccccC-cEEE-ECCE-EEEEeCCCCCCccceeEEEecCCC
Confidence               46678877632    33333332211111 2222 2344 677776542      356777664

>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=97.26  E-value=0.054  Score=41.62  Aligned_cols=177  Identities=14%  Similarity=0.199  Sum_probs=98.2

Q ss_pred             ccccCCeEEEEEecCCCcEEEEEcCCCeEEEEEcCCCCcceEEEeec-cCCceeEEEeccCCCCeEEEEcCCCcEEEEec
Q 021657           88 NGHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPVIKVEKA-HDADLHCVDWNPLDDNLILTGSADNSVRMFDR  166 (309)
Q Consensus        88 ~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~-~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~  166 (309)
                      .+-...+.++.|+|+...+|++ .+...-.++=...++  .+..+.- .-...-.+.|.. ++++.++--.++.+.++.+
T Consensus        82 ~g~~~nvS~LTynp~~rtLFav-~n~p~~iVElt~~Gd--lirtiPL~g~~DpE~Ieyig-~n~fvi~dER~~~l~~~~v  157 (316)
T COG3204          82 LGETANVSSLTYNPDTRTLFAV-TNKPAAIVELTKEGD--LIRTIPLTGFSDPETIEYIG-GNQFVIVDERDRALYLFTV  157 (316)
T ss_pred             ccccccccceeeCCCcceEEEe-cCCCceEEEEecCCc--eEEEecccccCChhHeEEec-CCEEEEEehhcceEEEEEE
Confidence            3445569999999998554444 444544454334555  3333321 123345778877 7777777777899998877


Q ss_pred             CCCCCCCC-CC---ceeeeccCCCCeeEEEEecCCCcEEEEecCCCcEEEEeCCcccccccCCCCCcCCCCceeeeecCC
Q 021657          167 RNLTSNGV-GS---PINKFEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGH  242 (309)
Q Consensus       167 ~~~~~~~~-~~---~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~  242 (309)
                      ........ ..   ++......+.....++|.|....++ .+-+-.-+.||.+....................+     .
T Consensus       158 d~~t~~~~~~~~~i~L~~~~k~N~GfEGlA~d~~~~~l~-~aKEr~P~~I~~~~~~~~~l~~~~~~~~~~~~~~-----f  231 (316)
T COG3204         158 DADTTVISAKVQKIPLGTTNKKNKGFEGLAWDPVDHRLF-VAKERNPIGIFEVTQSPSSLSVHASLDPTADRDL-----F  231 (316)
T ss_pred             cCCccEEeccceEEeccccCCCCcCceeeecCCCCceEE-EEEccCCcEEEEEecCCcccccccccCcccccce-----E
Confidence            65211000 00   1111112245678899999998766 5555666778777642211111000000000000     1


Q ss_pred             CcceeeEEEccCCCeEEEEecCCCCCCCCCCeEEEEEcc
Q 021657          243 RDKVVDFHWNASDPWTVVSVSDDCDSTGGGGTLQIWRMS  281 (309)
Q Consensus       243 ~~~v~~~~~~~~~~~~~~s~s~d~~s~~~dg~v~vw~~~  281 (309)
                      -..|.++.|++..+.+++-+-++       +.+.-.|..
T Consensus       232 ~~DvSgl~~~~~~~~LLVLS~ES-------r~l~Evd~~  263 (316)
T COG3204         232 VLDVSGLEFNAITNSLLVLSDES-------RRLLEVDLS  263 (316)
T ss_pred             eeccccceecCCCCcEEEEecCC-------ceEEEEecC
Confidence            23578889998777776644444       667666665

>PRK13616 lipoprotein LpqB; Provisional

Probab=97.26  E-value=0.074  Score=46.35  Aligned_cols=113  Identities=12%  Similarity=0.138  Sum_probs=62.2

Q ss_pred             eEEEEEecCCCcEEEEEcC------------CCeEEEEEcCCCCcceEEEeeccCCceeEEEeccCCCCeEEEEcCCCcE
Q 021657           94 VEDVTFCPSSAQEFCSVGD------------DSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSV  161 (309)
Q Consensus        94 v~~~~~~~~~~~~l~s~~~------------dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i  161 (309)
                      .+.-.|+|+| ..+++...            .+.+.+.++..++  ...   .....|..+.|+| +|..++... +|.|
T Consensus       399 ~t~PsWspDG-~~lw~v~dg~~~~~v~~~~~~gql~~~~vd~ge--~~~---~~~g~Issl~wSp-DG~RiA~i~-~g~v  470 (591)
T PRK13616        399 LTRPSWSLDA-DAVWVVVDGNTVVRVIRDPATGQLARTPVDASA--VAS---RVPGPISELQLSR-DGVRAAMII-GGKV  470 (591)
T ss_pred             CCCceECCCC-CceEEEecCcceEEEeccCCCceEEEEeccCch--hhh---ccCCCcCeEEECC-CCCEEEEEE-CCEE
Confidence            6667888887 44444432            2333333444333  111   2345799999999 898777765 5777


Q ss_pred             EEEecCCCCCCCCCC-ce---eeec-cCCCCeeEEEEecCCCcEEEEecCCCcEEEEeCCccc
Q 021657          162 RMFDRRNLTSNGVGS-PI---NKFE-GHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVG  219 (309)
Q Consensus       162 ~i~d~~~~~~~~~~~-~~---~~~~-~~~~~v~~~~~~~~~~~l~~~~~~dg~i~iwd~~~~~  219 (309)
                      ++--+.....   +. .+   ..+. .....+.++.|.+++. |+ .+..++.-.+|.+.-.+
T Consensus       471 ~Va~Vvr~~~---G~~~l~~~~~l~~~l~~~~~~l~W~~~~~-L~-V~~~~~~~~v~~v~vDG  528 (591)
T PRK13616        471 YLAVVEQTED---GQYALTNPREVGPGLGDTAVSLDWRTGDS-LV-VGRSDPEHPVWYVNLDG  528 (591)
T ss_pred             EEEEEEeCCC---CceeecccEEeecccCCccccceEecCCE-EE-EEecCCCCceEEEecCC
Confidence            7632221110   22 11   1122 2233468899999998 44 44445555566665533

>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]

Probab=97.23  E-value=0.046  Score=47.51  Aligned_cols=149  Identities=13%  Similarity=0.070  Sum_probs=82.4

Q ss_pred             cEEEEEcCCCe-----EEEEEcCCCCcceEEEeeccCCceeEEEeccCCCCeEEEEcCCC------cEEEEecCCCCCCC
Q 021657          105 QEFCSVGDDSC-----LILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADN------SVRMFDRRNLTSNG  173 (309)
Q Consensus       105 ~~l~s~~~dg~-----i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg------~i~i~d~~~~~~~~  173 (309)
                      .+.+.|+.||.     +-.||..+.++.............-...+   ++.+.++|+.++      .+..||..+..   
T Consensus       382 ~iYavGG~dg~~~l~svE~YDp~~~~W~~va~m~~~r~~~gv~~~---~g~iYi~GG~~~~~~~l~sve~YDP~t~~---  455 (571)
T KOG4441|consen  382 KLYAVGGFDGEKSLNSVECYDPVTNKWTPVAPMLTRRSGHGVAVL---GGKLYIIGGGDGSSNCLNSVECYDPETNT---  455 (571)
T ss_pred             EEEEEeccccccccccEEEecCCCCcccccCCCCcceeeeEEEEE---CCEEEEEcCcCCCccccceEEEEcCCCCc---
Confidence            78889998864     77788877775444433322222222222   788889998665      46678887643   


Q ss_pred             CCCceeeeccCCCCeeEEEEecCCCcEEEEecCCCc-----EEEEeCCcccccccCCCCCcCCCCceeeeecCCCcceee
Q 021657          174 VGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAEDGL-----LNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKVVD  248 (309)
Q Consensus       174 ~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~dg~-----i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~  248 (309)
                       +..+..+........ ++.-  +..|++.|+.|+.     |..||.....-             ..+.........+- 
T Consensus       456 -W~~~~~M~~~R~~~g-~a~~--~~~iYvvGG~~~~~~~~~VE~ydp~~~~W-------------~~v~~m~~~rs~~g-  517 (571)
T KOG4441|consen  456 -WTLIAPMNTRRSGFG-VAVL--NGKIYVVGGFDGTSALSSVERYDPETNQW-------------TMVAPMTSPRSAVG-  517 (571)
T ss_pred             -eeecCCcccccccce-EEEE--CCEEEEECCccCCCccceEEEEcCCCCce-------------eEcccCcccccccc-
Confidence             444444433222222 3332  2337888988773     56677665111             11111122222222 


Q ss_pred             EEEccCCCeEEEEecCCCCCCCCCCeEEEEEcc
Q 021657          249 FHWNASDPWTVVSVSDDCDSTGGGGTLQIWRMS  281 (309)
Q Consensus       249 ~~~~~~~~~~~~s~s~d~~s~~~dg~v~vw~~~  281 (309)
                        ....+..+++.++.|  -...=++|..||..
T Consensus       518 --~~~~~~~ly~vGG~~--~~~~l~~ve~ydp~  546 (571)
T KOG4441|consen  518 --VVVLGGKLYAVGGFD--GNNNLNTVECYDPE  546 (571)
T ss_pred             --EEEECCEEEEEeccc--CccccceeEEcCCC
Confidence              222256778877776  55555778888766

>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2

Probab=97.17  E-value=0.041  Score=41.98  Aligned_cols=183  Identities=9%  Similarity=0.034  Sum_probs=99.0

Q ss_pred             ceEEEEECCCCCEEEEecCCC--cEEEEeCCccccccccCCccccccCCC--CceeecCCCCCCCCcccCCCCCcCcccc
Q 021657           11 AEFALAMCPTEPYVLSGGKDK--SVVLWSIQDHITSSATDPATAKSAGSS--GSIIKQSPKPGDGNDKAADGPSVGPRGI   86 (309)
Q Consensus        11 ~V~~~~~~~~~~~l~t~~~dg--~i~vwd~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~   86 (309)
                      -...+.|..+|.++-+.+.-|  .|+.+|+.++............+..+-  .....+...-..+...+++..+.+.+..
T Consensus        46 FTQGL~~~~~g~LyESTG~yG~S~l~~~d~~tg~~~~~~~l~~~~FgEGit~~~d~l~qLTWk~~~~f~yd~~tl~~~~~  125 (264)
T PF05096_consen   46 FTQGLEFLDDGTLYESTGLYGQSSLRKVDLETGKVLQSVPLPPRYFGEGITILGDKLYQLTWKEGTGFVYDPNTLKKIGT  125 (264)
T ss_dssp             EEEEEEEEETTEEEEEECSTTEEEEEEEETTTSSEEEEEE-TTT--EEEEEEETTEEEEEESSSSEEEEEETTTTEEEEE
T ss_pred             cCccEEecCCCEEEEeCCCCCcEEEEEEECCCCcEEEEEECCccccceeEEEECCEEEEEEecCCeEEEEccccceEEEE
Confidence            456788877888888888777  689999998743322221111100000  0000111112345556667777766666


Q ss_pred             cccccCCeEEEEEecCCCcEEEEEcCCCeEEEEEcCCCCcceEEEeeccC---CceeEEEeccCCCCeEEEEcCCCcEEE
Q 021657           87 YNGHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPVIKVEKAHD---ADLHCVDWNPLDDNLILTGSADNSVRM  163 (309)
Q Consensus        87 ~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~---~~v~~~~~~~~~~~~l~~~~~dg~i~i  163 (309)
                      +. ..+.=+.++  .++ ..|+.......|..+|..+.+...........   ..++-+.|-  +|...|=.-....|..
T Consensus       126 ~~-y~~EGWGLt--~dg-~~Li~SDGS~~L~~~dP~~f~~~~~i~V~~~g~pv~~LNELE~i--~G~IyANVW~td~I~~  199 (264)
T PF05096_consen  126 FP-YPGEGWGLT--SDG-KRLIMSDGSSRLYFLDPETFKEVRTIQVTDNGRPVSNLNELEYI--NGKIYANVWQTDRIVR  199 (264)
T ss_dssp             EE--SSS--EEE--ECS-SCEEEE-SSSEEEEE-TTT-SEEEEEE-EETTEE---EEEEEEE--TTEEEEEETTSSEEEE
T ss_pred             Ee-cCCcceEEE--cCC-CEEEEECCccceEEECCcccceEEEEEEEECCEECCCcEeEEEE--cCEEEEEeCCCCeEEE
Confidence            54 334567777  455 44555556678999998776622111122222   235556665  4666666656666777


Q ss_pred             EecCCCCCCCCCCceeeec---------------cCCCCeeEEEEecCCCcEEEEec
Q 021657          164 FDRRNLTSNGVGSPINKFE---------------GHSAAVLCVQWSPDKSSVFGSSA  205 (309)
Q Consensus       164 ~d~~~~~~~~~~~~~~~~~---------------~~~~~v~~~~~~~~~~~l~~~~~  205 (309)
                      .|..+      ++.+..+.               ....-.+.||+.|....++++|=
T Consensus       200 Idp~t------G~V~~~iDls~L~~~~~~~~~~~~~~dVLNGIAyd~~~~~l~vTGK  250 (264)
T PF05096_consen  200 IDPET------GKVVGWIDLSGLRPEVGRDKSRQPDDDVLNGIAYDPETDRLFVTGK  250 (264)
T ss_dssp             EETTT-------BEEEEEE-HHHHHHHTSTTST--TTS-EEEEEEETTTTEEEEEET
T ss_pred             EeCCC------CeEEEEEEhhHhhhcccccccccccCCeeEeEeEeCCCCEEEEEeC
Confidence            77777      55555442               01345899999999988887774

3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.

>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]

Probab=97.14  E-value=0.058  Score=42.73  Aligned_cols=119  Identities=13%  Similarity=0.130  Sum_probs=78.6

Q ss_pred             cCcccccccccCCeEEEEEecCCCcEEEEEcCCCeEEEEEcCC--C---CcceEEEeeccCCceeEEEeccCCCCeEEEE
Q 021657           81 VGPRGIYNGHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARV--G---TSPVIKVEKAHDADLHCVDWNPLDDNLILTG  155 (309)
Q Consensus        81 ~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~--~---~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~  155 (309)
                      ...+..+..+-..-+.|+|+|+++.++++=+..+.|.-|++..  +   ............+..-.++... ++++.+++
T Consensus       152 g~~~~l~~~~~~~~NGla~SpDg~tly~aDT~~~~i~r~~~d~~~g~~~~~~~~~~~~~~~G~PDG~~vDa-dG~lw~~a  230 (307)
T COG3386         152 GGVVRLLDDDLTIPNGLAFSPDGKTLYVADTPANRIHRYDLDPATGPIGGRRGFVDFDEEPGLPDGMAVDA-DGNLWVAA  230 (307)
T ss_pred             CCEEEeecCcEEecCceEECCCCCEEEEEeCCCCeEEEEecCcccCccCCcceEEEccCCCCCCCceEEeC-CCCEEEec
Confidence            3344444555556688999999966666666678888888752  1   1111222333456667788887 78877655


Q ss_pred             cCCC-cEEEEecCCCCCCCCCCceeeeccCCCCeeEEEEe-cCCCcEEEEecCC
Q 021657          156 SADN-SVRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWS-PDKSSVFGSSAED  207 (309)
Q Consensus       156 ~~dg-~i~i~d~~~~~~~~~~~~~~~~~~~~~~v~~~~~~-~~~~~l~~~~~~d  207 (309)
                      ..+| .|..|+..       ++.+..+......+++++|- |+.+.|++++...
T Consensus       231 ~~~g~~v~~~~pd-------G~l~~~i~lP~~~~t~~~FgG~~~~~L~iTs~~~  277 (307)
T COG3386         231 VWGGGRVVRFNPD-------GKLLGEIKLPVKRPTNPAFGGPDLNTLYITSARS  277 (307)
T ss_pred             ccCCceEEEECCC-------CcEEEEEECCCCCCccceEeCCCcCEEEEEecCC
Confidence            5554 89999877       67777777665777888885 5566677666544

>PF15390 DUF4613: Domain of unknown function (DUF4613)

Probab=97.12  E-value=0.025  Score=47.64  Aligned_cols=121  Identities=12%  Similarity=0.255  Sum_probs=75.6

Q ss_pred             ccCCeEEEEEecCC----CcEEEEEcCCCeEEEEEcCCCC---cceEEEeecc-----CCceeEEEeccCCCCeEEEEcC
Q 021657           90 HEDTVEDVTFCPSS----AQEFCSVGDDSCLILWDARVGT---SPVIKVEKAH-----DADLHCVDWNPLDDNLILTGSA  157 (309)
Q Consensus        90 ~~~~v~~~~~~~~~----~~~l~s~~~dg~i~iwd~~~~~---~~~~~~~~~~-----~~~v~~~~~~~~~~~~l~~~~~  157 (309)
                      .-..|..+.|.|-+    +. |++.-....|.+|.+....   .........+     .---..+.|+| ....|++-..
T Consensus        55 qFEhV~GlsW~P~~~~~~pa-LLAVQHkkhVtVWqL~~s~~e~~K~l~sQtcEi~e~~pvLpQGCVWHP-k~~iL~VLT~  132 (671)
T PF15390_consen   55 QFEHVHGLSWAPPCTADTPA-LLAVQHKKHVTVWQLCPSTTERNKLLMSQTCEIREPFPVLPQGCVWHP-KKAILTVLTA  132 (671)
T ss_pred             ccceeeeeeecCcccCCCCc-eEEEeccceEEEEEeccCccccccceeeeeeeccCCcccCCCcccccC-CCceEEEEec
Confidence            34568999998853    24 4445677899999985211   1111111111     11224667999 7777777666


Q ss_pred             CCcEEEEecCCCCCCCCCCceeeeccCCCCeeEEEEecCCCcEEEEecCCCcEEEEeCCc
Q 021657          158 DNSVRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEK  217 (309)
Q Consensus       158 dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~dg~i~iwd~~~  217 (309)
                      ...-.+++++...    .+....+ ...+-|.|.+|.+||++|+++-+..=.-+|||-..
T Consensus       133 ~dvSV~~sV~~d~----srVkaDi-~~~G~IhCACWT~DG~RLVVAvGSsLHSyiWd~~q  187 (671)
T PF15390_consen  133 RDVSVLPSVHCDS----SRVKADI-KTSGLIHCACWTKDGQRLVVAVGSSLHSYIWDSAQ  187 (671)
T ss_pred             CceeEeeeeeeCC----ceEEEec-cCCceEEEEEecCcCCEEEEEeCCeEEEEEecCch
Confidence            6555677777531    2222334 35678999999999999877666655677887543

>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex

Probab=97.11  E-value=0.13  Score=42.96  Aligned_cols=29  Identities=14%  Similarity=0.260  Sum_probs=24.3

Q ss_pred             CCeEEEEEecCCCcEEEEEcCCCeEEEEEcC
Q 021657           92 DTVEDVTFCPSSAQEFCSVGDDSCLILWDAR  122 (309)
Q Consensus        92 ~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~  122 (309)
                      +.|.++.|..+.  .|+.-..||.++++|+.
T Consensus        81 ~~iv~~~wt~~e--~LvvV~~dG~v~vy~~~  109 (410)
T PF04841_consen   81 GRIVGMGWTDDE--ELVVVQSDGTVRVYDLF  109 (410)
T ss_pred             CCEEEEEECCCC--eEEEEEcCCEEEEEeCC
Confidence            789999998864  46666799999999985

Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm

>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea

Probab=97.06  E-value=0.13  Score=42.19  Aligned_cols=170  Identities=15%  Similarity=0.137  Sum_probs=76.8

Q ss_pred             EEEecCCCcEEEEEc------CCCeEEEEEcCCCCcceEEEeecc---CCceeEEEeccCCCCeEEEEc-----------
Q 021657           97 VTFCPSSAQEFCSVG------DDSCLILWDARVGTSPVIKVEKAH---DADLHCVDWNPLDDNLILTGS-----------  156 (309)
Q Consensus        97 ~~~~~~~~~~l~s~~------~dg~i~iwd~~~~~~~~~~~~~~~---~~~v~~~~~~~~~~~~l~~~~-----------  156 (309)
                      +..-|+| .+++++-      .-|-+.+.|-++.+  +.......   ..--+.+-|.| ..+.+++..           
T Consensus       135 ~Hclp~G-~imIS~lGd~~G~g~Ggf~llD~~tf~--v~g~We~~~~~~~~gYDfw~qp-r~nvMiSSeWg~P~~~~~Gf  210 (461)
T PF05694_consen  135 VHCLPDG-RIMISALGDADGNGPGGFVLLDGETFE--VKGRWEKDRGPQPFGYDFWYQP-RHNVMISSEWGAPSMFEKGF  210 (461)
T ss_dssp             EEE-SS---EEEEEEEETTS-S--EEEEE-TTT----EEEE--SB-TT------EEEET-TTTEEEE-B---HHHHTT--
T ss_pred             eeecCCc-cEEEEeccCCCCCCCCcEEEEcCcccc--ccceeccCCCCCCCCCCeEEcC-CCCEEEEeccCChhhcccCC
Confidence            3444666 5666543      22567777776655  34333321   22345667777 677777764           


Q ss_pred             ---------CCCcEEEEecCCCCCCCCCCceeeeccCCC--CeeEEEEe--cCCCcEEEEecCCCcEEEEeCCccccccc
Q 021657          157 ---------ADNSVRMFDRRNLTSNGVGSPINKFEGHSA--AVLCVQWS--PDKSSVFGSSAEDGLLNIWDYEKVGKKVE  223 (309)
Q Consensus       157 ---------~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~--~v~~~~~~--~~~~~l~~~~~~dg~i~iwd~~~~~~~~~  223 (309)
                               ....+.+||+.+      .+.++++.-...  ...-|.|.  |+..+=|+.+--..+|..|--...++-..
T Consensus       211 ~~~d~~~~~yG~~l~vWD~~~------r~~~Q~idLg~~g~~pLEvRflH~P~~~~gFvg~aLss~i~~~~k~~~g~W~a  284 (461)
T PF05694_consen  211 NPEDLEAGKYGHSLHVWDWST------RKLLQTIDLGEEGQMPLEVRFLHDPDANYGFVGCALSSSIWRFYKDDDGEWAA  284 (461)
T ss_dssp             -TTTHHHH-S--EEEEEETTT------TEEEEEEES-TTEEEEEEEEE-SSTT--EEEEEEE--EEEEEEEE-ETTEEEE
T ss_pred             ChhHhhcccccCeEEEEECCC------CcEeeEEecCCCCCceEEEEecCCCCccceEEEEeccceEEEEEEcCCCCeee
Confidence                     345799999999      888888875432  24456664  55555454444455554443322121100


Q ss_pred             ----CCCCC--cCC-CCceeeeecCCCcceeeEEEccCCCeEEEEecCCCCCCCCCCeEEEEEcccc
Q 021657          224 ----QGPRT--TNY-PAGLFFQHAGHRDKVVDFHWNASDPWTVVSVSDDCDSTGGGGTLQIWRMSDL  283 (309)
Q Consensus       224 ----~~~~~--~~~-~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~s~d~~s~~~dg~v~vw~~~~~  283 (309)
                          ..+..  ... ...++..+..-..-|+++..|.|+.+|.+++=.+       |.|+.||+.++
T Consensus       285 ~kVi~ip~~~v~~~~lp~ml~~~~~~P~LitDI~iSlDDrfLYvs~W~~-------GdvrqYDISDP  344 (461)
T PF05694_consen  285 EKVIDIPAKKVEGWILPEMLKPFGAVPPLITDILISLDDRFLYVSNWLH-------GDVRQYDISDP  344 (461)
T ss_dssp             EEEEEE--EE--SS---GGGGGG-EE------EEE-TTS-EEEEEETTT-------TEEEEEE-SST
T ss_pred             eEEEECCCcccCcccccccccccccCCCceEeEEEccCCCEEEEEcccC-------CcEEEEecCCC
Confidence                00000  000 0001111111234579999999999999987776       99999999974

The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.

>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=97.00  E-value=0.16  Score=42.48  Aligned_cols=246  Identities=10%  Similarity=0.019  Sum_probs=116.9

Q ss_pred             ceEEEEECCCCCEEEEe-cCC----CcEEEEeCCccccccccCC-c--c-ccccCCCCceeecCCCC--C------CCCc
Q 021657           11 AEFALAMCPTEPYVLSG-GKD----KSVVLWSIQDHITSSATDP-A--T-AKSAGSSGSIIKQSPKP--G------DGND   73 (309)
Q Consensus        11 ~V~~~~~~~~~~~l~t~-~~d----g~i~vwd~~~~~~~~~~~~-~--~-~~~~~~~~~~~~~~~~~--~------~~~~   73 (309)
                      .+....++|+|++||-+ +..    ..|++.|++++........ .  . .........+.......  .      ...+
T Consensus       125 ~~~~~~~Spdg~~la~~~s~~G~e~~~l~v~Dl~tg~~l~d~i~~~~~~~~~W~~d~~~~~y~~~~~~~~~~~~~~~~~v  204 (414)
T PF02897_consen  125 SLGGFSVSPDGKRLAYSLSDGGSEWYTLRVFDLETGKFLPDGIENPKFSSVSWSDDGKGFFYTRFDEDQRTSDSGYPRQV  204 (414)
T ss_dssp             EEEEEEETTTSSEEEEEEEETTSSEEEEEEEETTTTEEEEEEEEEEESEEEEECTTSSEEEEEECSTTTSS-CCGCCEEE
T ss_pred             EeeeeeECCCCCEEEEEecCCCCceEEEEEEECCCCcCcCCcccccccceEEEeCCCCEEEEEEeCcccccccCCCCcEE
Confidence            34468899999998743 333    3599999998843322111 1  1 11222222222222222  1      3334


Q ss_pred             ccCCCCCcCcc--cccccccCC--eEEEEEecCCCcEEEEEcCC---CeEEEEEcCCC---CcceEEEeeccCCceeEEE
Q 021657           74 KAADGPSVGPR--GIYNGHEDT--VEDVTFCPSSAQEFCSVGDD---SCLILWDARVG---TSPVIKVEKAHDADLHCVD  143 (309)
Q Consensus        74 ~~~~~~~~~~~--~~~~~~~~~--v~~~~~~~~~~~~l~s~~~d---g~i~iwd~~~~---~~~~~~~~~~~~~~v~~~~  143 (309)
                      ..+...+....  ..+.+....  ...+..++++..+++.....   ..+.+.|+...   .. ....+......+....
T Consensus       205 ~~~~~gt~~~~d~lvfe~~~~~~~~~~~~~s~d~~~l~i~~~~~~~~s~v~~~d~~~~~~~~~-~~~~l~~~~~~~~~~v  283 (414)
T PF02897_consen  205 YRHKLGTPQSEDELVFEEPDEPFWFVSVSRSKDGRYLFISSSSGTSESEVYLLDLDDGGSPDA-KPKLLSPREDGVEYYV  283 (414)
T ss_dssp             EEEETTS-GGG-EEEEC-TTCTTSEEEEEE-TTSSEEEEEEESSSSEEEEEEEECCCTTTSS--SEEEEEESSSS-EEEE
T ss_pred             EEEECCCChHhCeeEEeecCCCcEEEEEEecCcccEEEEEEEccccCCeEEEEeccccCCCcC-CcEEEeCCCCceEEEE
Confidence            55554443322  333333332  56788899985555544433   35788888764   21 2333333333333333


Q ss_pred             eccCCCCeEEEEcC---CCcEEEEecCCCCCCCCCCceeeeccCCCCeeEEEEecCCCcEEEEecCCCc--EEEEeCC-c
Q 021657          144 WNPLDDNLILTGSA---DNSVRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAEDGL--LNIWDYE-K  217 (309)
Q Consensus       144 ~~~~~~~~l~~~~~---dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~dg~--i~iwd~~-~  217 (309)
                      -+. ++.+++....   .+.|.-.++.....   ......+..+...+.-..+...+.+|++....++.  |+++++. .
T Consensus       284 ~~~-~~~~yi~Tn~~a~~~~l~~~~l~~~~~---~~~~~~l~~~~~~~~l~~~~~~~~~Lvl~~~~~~~~~l~v~~~~~~  359 (414)
T PF02897_consen  284 DHH-GDRLYILTNDDAPNGRLVAVDLADPSP---AEWWTVLIPEDEDVSLEDVSLFKDYLVLSYRENGSSRLRVYDLDDG  359 (414)
T ss_dssp             EEE-TTEEEEEE-TT-TT-EEEEEETTSTSG---GGEEEEEE--SSSEEEEEEEEETTEEEEEEEETTEEEEEEEETT-T
T ss_pred             Ecc-CCEEEEeeCCCCCCcEEEEeccccccc---ccceeEEcCCCCceeEEEEEEECCEEEEEEEECCccEEEEEECCCC
Confidence            233 4444444432   35677777777321   01122444444433333444456667777766654  6777877 3


Q ss_pred             ccccccCCCCCcCCCCceeeeec-CCCcceeeEEEccCCCeEEEEecCCCCCCCCCCeEEEEEcc
Q 021657          218 VGKKVEQGPRTTNYPAGLFFQHA-GHRDKVVDFHWNASDPWTVVSVSDDCDSTGGGGTLQIWRMS  281 (309)
Q Consensus       218 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~~~~s~s~d~~s~~~dg~v~vw~~~  281 (309)
                       ..               ..... .-.+.|..+...++.+.+.++.+    +=-.-+++..||+.
T Consensus       360 -~~---------------~~~~~~p~~g~v~~~~~~~~~~~~~~~~s----s~~~P~~~y~~d~~  404 (414)
T PF02897_consen  360 -KE---------------SREIPLPEAGSVSGVSGDFDSDELRFSYS----SFTTPPTVYRYDLA  404 (414)
T ss_dssp             -EE---------------EEEEESSSSSEEEEEES-TT-SEEEEEEE----ETTEEEEEEEEETT
T ss_pred             -cE---------------EeeecCCcceEEeccCCCCCCCEEEEEEe----CCCCCCEEEEEECC
Confidence             11               11111 12234556666666666665544    11233577777776

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....

>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation

Probab=96.99  E-value=0.11  Score=40.20  Aligned_cols=155  Identities=20%  Similarity=0.252  Sum_probs=87.8

Q ss_pred             CeEEEEEecCCCcEEEEEc--CCCeEEEEEcCCCCcceEEEeeccCCceeEEEeccCCCCeEEEEcCCCcEEEEe-cCCC
Q 021657           93 TVEDVTFCPSSAQEFCSVG--DDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFD-RRNL  169 (309)
Q Consensus        93 ~v~~~~~~~~~~~~l~s~~--~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d-~~~~  169 (309)
                      .+.+.++++++..+.+...  ....+.++..  +.. .....  ....+..-.|++ ++...+....+...+++. ....
T Consensus        25 ~~~s~AvS~dg~~~A~v~~~~~~~~L~~~~~--~~~-~~~~~--~g~~l~~PS~d~-~g~~W~v~~~~~~~~~~~~~~~g   98 (253)
T PF10647_consen   25 DVTSPAVSPDGSRVAAVSEGDGGRSLYVGPA--GGP-VRPVL--TGGSLTRPSWDP-DGWVWTVDDGSGGVRVVRDSASG   98 (253)
T ss_pred             cccceEECCCCCeEEEEEEcCCCCEEEEEcC--CCc-ceeec--cCCccccccccC-CCCEEEEEcCCCceEEEEecCCC
Confidence            6888999999954444442  3344555543  331 12222  233788889999 777777766666667664 2221


Q ss_pred             CCCCCCCceeeeccC--CCCeeEEEEecCCCcEEEEe--cCCCcEEEEeCCcccccccCCCCCcCCCCceeeeecCCCcc
Q 021657          170 TSNGVGSPINKFEGH--SAAVLCVQWSPDKSSVFGSS--AEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDK  245 (309)
Q Consensus       170 ~~~~~~~~~~~~~~~--~~~v~~~~~~~~~~~l~~~~--~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  245 (309)
                      .    ... ......  ...|..+.++|||..+.+..  ..++.|.+--+.......   +..   ..............
T Consensus        99 ~----~~~-~~v~~~~~~~~I~~l~vSpDG~RvA~v~~~~~~~~v~va~V~r~~~g~---~~~---l~~~~~~~~~~~~~  167 (253)
T PF10647_consen   99 T----GEP-VEVDWPGLRGRITALRVSPDGTRVAVVVEDGGGGRVYVAGVVRDGDGV---PRR---LTGPRRVAPPLLSD  167 (253)
T ss_pred             c----cee-EEecccccCCceEEEEECCCCcEEEEEEecCCCCeEEEEEEEeCCCCC---cce---eccceEecccccCc
Confidence            1    222 122211  12899999999999866555  235777776654422210   000   01122222234568


Q ss_pred             eeeEEEccCCCeEEEEecC
Q 021657          246 VVDFHWNASDPWTVVSVSD  264 (309)
Q Consensus       246 v~~~~~~~~~~~~~~s~s~  264 (309)
                      +.+++|.+++..++++...
T Consensus       168 v~~v~W~~~~~L~V~~~~~  186 (253)
T PF10647_consen  168 VTDVAWSDDSTLVVLGRSA  186 (253)
T ss_pred             ceeeeecCCCEEEEEeCCC
Confidence            8999999988766654433

It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.

>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit

Probab=96.99  E-value=0.11  Score=41.74  Aligned_cols=115  Identities=14%  Similarity=0.164  Sum_probs=63.1

Q ss_pred             CeEEEEEecCCCcEEEEEcCCCeEEEEEcCCCCcceEEE-eeccCCceeEEEeccCCCCeEEEEcCCCcEEEEecCCCCC
Q 021657           93 TVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPVIKV-EKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTS  171 (309)
Q Consensus        93 ~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~-~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~  171 (309)
                      .+.++...  + .+++.|.....+.++..+......... .......++++.+-+ +++.++.+..+|.+.++.......
T Consensus       131 ~i~sl~~~--~-~~I~vgD~~~sv~~~~~~~~~~~l~~va~d~~~~~v~~~~~l~-d~~~~i~~D~~gnl~~l~~~~~~~  206 (321)
T PF03178_consen  131 YITSLSVF--K-NYILVGDAMKSVSLLRYDEENNKLILVARDYQPRWVTAAEFLV-DEDTIIVGDKDGNLFVLRYNPEIP  206 (321)
T ss_dssp             SEEEEEEE--T-TEEEEEESSSSEEEEEEETTTE-EEEEEEESS-BEEEEEEEE--SSSEEEEEETTSEEEEEEE-SS-S
T ss_pred             EEEEEecc--c-cEEEEEEcccCEEEEEEEccCCEEEEEEecCCCccEEEEEEec-CCcEEEEEcCCCeEEEEEECCCCc
Confidence            56666654  3 578888887888888655432112211 222345688888886 557999999999999998763211


Q ss_pred             CCC-CC----ceeeeccCCCCeeEE---EEec--CCCc-----EEEEecCCCcEEE
Q 021657          172 NGV-GS----PINKFEGHSAAVLCV---QWSP--DKSS-----VFGSSAEDGLLNI  212 (309)
Q Consensus       172 ~~~-~~----~~~~~~~~~~~v~~~---~~~~--~~~~-----l~~~~~~dg~i~i  212 (309)
                      ... +.    .+..+. ....|+++   ++.|  .+..     .++-++.+|.|-+
T Consensus       207 ~~~~~~~~L~~~~~f~-lg~~v~~~~~~~l~~~~~~~~~~~~~~i~~~T~~G~Ig~  261 (321)
T PF03178_consen  207 NSRDGDPKLERISSFH-LGDIVNSFRRGSLIPRSGSSESPNRPQILYGTVDGSIGV  261 (321)
T ss_dssp             STTTTTTBEEEEEEEE--SS-EEEEEE--SS--SSSS-TTEEEEEEEEETTS-EEE
T ss_pred             ccccccccceeEEEEE-CCCccceEEEEEeeecCCCCcccccceEEEEecCCEEEE
Confidence            111 11    223333 34567777   4445  2221     2446777888873

CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....

>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation

Probab=96.90  E-value=0.13  Score=39.74  Aligned_cols=118  Identities=13%  Similarity=0.108  Sum_probs=67.3

Q ss_pred             CeEEEEEecCCCcEEEEEcCCCeEEEEE-cCCCCcceEEEeeccC-CceeEEEeccCCCCeEEEEc---CCCcEEEEecC
Q 021657           93 TVEDVTFCPSSAQEFCSVGDDSCLILWD-ARVGTSPVIKVEKAHD-ADLHCVDWNPLDDNLILTGS---ADNSVRMFDRR  167 (309)
Q Consensus        93 ~v~~~~~~~~~~~~l~s~~~dg~i~iwd-~~~~~~~~~~~~~~~~-~~v~~~~~~~~~~~~l~~~~---~dg~i~i~d~~  167 (309)
                      .+..-.|++++ ...+....+...+++. ...+.......-.... ..|..++++| +|..++...   .++.|.+--+.
T Consensus        67 ~l~~PS~d~~g-~~W~v~~~~~~~~~~~~~~~g~~~~~~v~~~~~~~~I~~l~vSp-DG~RvA~v~~~~~~~~v~va~V~  144 (253)
T PF10647_consen   67 SLTRPSWDPDG-WVWTVDDGSGGVRVVRDSASGTGEPVEVDWPGLRGRITALRVSP-DGTRVAVVVEDGGGGRVYVAGVV  144 (253)
T ss_pred             ccccccccCCC-CEEEEEcCCCceEEEEecCCCcceeEEecccccCCceEEEEECC-CCcEEEEEEecCCCCeEEEEEEE
Confidence            67777899987 5555555556666663 3333321222211112 2899999999 888776655   35777776554


Q ss_pred             CCCCC---CCCCceeeeccCCCCeeEEEEecCCCcEEEEecCCCcEEE
Q 021657          168 NLTSN---GVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNI  212 (309)
Q Consensus       168 ~~~~~---~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~dg~i~i  212 (309)
                      .....   ....++.........+..++|.+++..+++....+..+..
T Consensus       145 r~~~g~~~~l~~~~~~~~~~~~~v~~v~W~~~~~L~V~~~~~~~~~~~  192 (253)
T PF10647_consen  145 RDGDGVPRRLTGPRRVAPPLLSDVTDVAWSDDSTLVVLGRSAGGPVVR  192 (253)
T ss_pred             eCCCCCcceeccceEecccccCcceeeeecCCCEEEEEeCCCCCceeE
Confidence            32211   0012222222335678999999999854444444443443

It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.

>PHA02713 hypothetical protein; Provisional

Probab=96.89  E-value=0.031  Score=48.57  Aligned_cols=93  Identities=10%  Similarity=0.059  Sum_probs=51.9

Q ss_pred             eEEEEEcCCCCcceEEEeeccCCceeEEEeccCCCCeEEEEcCCC------cEEEEecCC-CCCCCCCCceeeeccCCCC
Q 021657          115 CLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADN------SVRMFDRRN-LTSNGVGSPINKFEGHSAA  187 (309)
Q Consensus       115 ~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg------~i~i~d~~~-~~~~~~~~~~~~~~~~~~~  187 (309)
                      .+..||..+.++.....+....... +++..  ++...+.|+.++      .+..||..+ .+    +..+..+......
T Consensus       433 ~ve~YDP~td~W~~v~~m~~~r~~~-~~~~~--~~~IYv~GG~~~~~~~~~~ve~Ydp~~~~~----W~~~~~m~~~r~~  505 (557)
T PHA02713        433 KVIRYDTVNNIWETLPNFWTGTIRP-GVVSH--KDDIYVVCDIKDEKNVKTCIFRYNTNTYNG----WELITTTESRLSA  505 (557)
T ss_pred             eEEEECCCCCeEeecCCCCcccccC-cEEEE--CCEEEEEeCCCCCCccceeEEEecCCCCCC----eeEccccCccccc
Confidence            4778888877653333322222222 22222  577778887642      467788876 33    4445455433333


Q ss_pred             eeEEEEecCCCcEEEEecCCC--cEEEEeCCc
Q 021657          188 VLCVQWSPDKSSVFGSSAEDG--LLNIWDYEK  217 (309)
Q Consensus       188 v~~~~~~~~~~~l~~~~~~dg--~i~iwd~~~  217 (309)
                      ...+.+  ++ .+++.|+.|+  .+..||..+
T Consensus       506 ~~~~~~--~~-~iyv~Gg~~~~~~~e~yd~~~  534 (557)
T PHA02713        506 LHTILH--DN-TIMMLHCYESYMLQDTFNVYT  534 (557)
T ss_pred             ceeEEE--CC-EEEEEeeecceeehhhcCccc
Confidence            333333  33 4788999888  667777766

>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases

Probab=96.89  E-value=0.24  Score=42.53  Aligned_cols=185  Identities=11%  Similarity=0.072  Sum_probs=99.6

Q ss_pred             CCEEEEecCCCcEEEEeCCccccccccCCcccc-------ccCC-CCce-eecCCCCCCCCcccCCCCCcCccccccccc
Q 021657           21 EPYVLSGGKDKSVVLWSIQDHITSSATDPATAK-------SAGS-SGSI-IKQSPKPGDGNDKAADGPSVGPRGIYNGHE   91 (309)
Q Consensus        21 ~~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~-------~~~~-~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   91 (309)
                      +..+..++.++.|.-.|.++++...........       .... .... ..+..+..++.+..++..+++.+-......
T Consensus        61 ~g~vy~~~~~g~l~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~g~~~~~~~~V~v~~~~g~v~AlD~~TG~~~W~~~~~~  140 (488)
T cd00216          61 DGDMYFTTSHSALFALDAATGKVLWRYDPKLPADRGCCDVVNRGVAYWDPRKVFFGTFDGRLVALDAETGKQVWKFGNND  140 (488)
T ss_pred             CCEEEEeCCCCcEEEEECCCChhhceeCCCCCccccccccccCCcEEccCCeEEEecCCCeEEEEECCCCCEeeeecCCC
Confidence            446777888899999999888655554332210       0000 0000 111123345677777777777665543322


Q ss_pred             CC-----eE-EEEEecCCCcEEEEEc---------CCCeEEEEEcCCCCcceEEEeeccCC-------------------
Q 021657           92 DT-----VE-DVTFCPSSAQEFCSVG---------DDSCLILWDARVGTSPVIKVEKAHDA-------------------  137 (309)
Q Consensus        92 ~~-----v~-~~~~~~~~~~~l~s~~---------~dg~i~iwd~~~~~~~~~~~~~~~~~-------------------  137 (309)
                      ..     +. ...+.. +  +++.++         .+|.+.-+|..+++.  .-.......                   
T Consensus       141 ~~~~~~~i~ssP~v~~-~--~v~vg~~~~~~~~~~~~g~v~alD~~TG~~--~W~~~~~~~~~~~~~~~~~~~~~~~~~g  215 (488)
T cd00216         141 QVPPGYTMTGAPTIVK-K--LVIIGSSGAEFFACGVRGALRAYDVETGKL--LWRFYTTEPDPNAFPTWGPDRQMWGPGG  215 (488)
T ss_pred             CcCcceEecCCCEEEC-C--EEEEeccccccccCCCCcEEEEEECCCCce--eeEeeccCCCcCCCCCCCCCcceecCCC
Confidence            10     11 112221 2  344443         468889999988873  222221100                   


Q ss_pred             -ce-eEEEeccCCCCeEEEEcCCC------------------cEEEEecCCCCCCCCCCceeeeccCCCCe------eEE
Q 021657          138 -DL-HCVDWNPLDDNLILTGSADN------------------SVRMFDRRNLTSNGVGSPINKFEGHSAAV------LCV  191 (309)
Q Consensus       138 -~v-~~~~~~~~~~~~l~~~~~dg------------------~i~i~d~~~~~~~~~~~~~~~~~~~~~~v------~~~  191 (309)
                       .+ ...++++ .+..++.++.++                  .|.-+|..+      ++.+..++......      ...
T Consensus       216 ~~vw~~pa~d~-~~g~V~vg~~~g~~~~~~~~~~~~~~~~~~~l~Ald~~t------G~~~W~~~~~~~~~~~~~~~s~p  288 (488)
T cd00216         216 GTSWASPTYDP-KTNLVYVGTGNGSPWNWGGRRTPGDNLYTDSIVALDADT------GKVKWFYQTTPHDLWDYDGPNQP  288 (488)
T ss_pred             CCccCCeeEeC-CCCEEEEECCCCCCCccCCccCCCCCCceeeEEEEcCCC------CCEEEEeeCCCCCCcccccCCCC
Confidence             01 1344555 566777777665                  688899998      88887765321111      011


Q ss_pred             EEe----cCCC--cEEEEecCCCcEEEEeCCc
Q 021657          192 QWS----PDKS--SVFGSSAEDGLLNIWDYEK  217 (309)
Q Consensus       192 ~~~----~~~~--~l~~~~~~dg~i~iwd~~~  217 (309)
                      .+.    -++.  .+++.++.+|.+...|.++
T Consensus       289 ~~~~~~~~~g~~~~~V~~g~~~G~l~ald~~t  320 (488)
T cd00216         289 SLADIKPKDGKPVPAIVHAPKNGFFYVLDRTT  320 (488)
T ss_pred             eEEeccccCCCeeEEEEEECCCceEEEEECCC
Confidence            111    1222  2456788899999999987

The alignment model contains an 8-bladed beta-propeller.

>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea

Probab=96.83  E-value=0.013  Score=47.63  Aligned_cols=190  Identities=12%  Similarity=0.045  Sum_probs=81.7

Q ss_pred             CCCcccCCCCCcCcccccccc---cCCeEEEEEecCCCcEEEEEcC--------------------CCeEEEEEcCCCCc
Q 021657           70 DGNDKAADGPSVGPRGIYNGH---EDTVEDVTFCPSSAQEFCSVGD--------------------DSCLILWDARVGTS  126 (309)
Q Consensus        70 ~~~~~~~~~~~~~~~~~~~~~---~~~v~~~~~~~~~~~~l~s~~~--------------------dg~i~iwd~~~~~~  126 (309)
                      .+.+.+.+..+.+........   ..--.++-|.|.. +.++|...                    -.++.+||+.+.+ 
T Consensus       156 ~Ggf~llD~~tf~v~g~We~~~~~~~~gYDfw~qpr~-nvMiSSeWg~P~~~~~Gf~~~d~~~~~yG~~l~vWD~~~r~-  233 (461)
T PF05694_consen  156 PGGFVLLDGETFEVKGRWEKDRGPQPFGYDFWYQPRH-NVMISSEWGAPSMFEKGFNPEDLEAGKYGHSLHVWDWSTRK-  233 (461)
T ss_dssp             --EEEEE-TTT--EEEE--SB-TT------EEEETTT-TEEEE-B---HHHHTT---TTTHHHH-S--EEEEEETTTTE-
T ss_pred             CCcEEEEcCccccccceeccCCCCCCCCCCeEEcCCC-CEEEEeccCChhhcccCCChhHhhcccccCeEEEEECCCCc-
Confidence            345566666666555544432   2234566777766 66666643                    3689999999888 


Q ss_pred             ceEEEeeccCC--ceeEEEec--cCCCCeEEEEcCCCcEEEEecCCCCCCCCCCceeee-----------------ccCC
Q 021657          127 PVIKVEKAHDA--DLHCVDWN--PLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKF-----------------EGHS  185 (309)
Q Consensus       127 ~~~~~~~~~~~--~v~~~~~~--~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~-----------------~~~~  185 (309)
                       ..+.+.-...  ....+.|.  |....-|+.+...++|..|--....... .+.+..+                 ....
T Consensus       234 -~~Q~idLg~~g~~pLEvRflH~P~~~~gFvg~aLss~i~~~~k~~~g~W~-a~kVi~ip~~~v~~~~lp~ml~~~~~~P  311 (461)
T PF05694_consen  234 -LLQTIDLGEEGQMPLEVRFLHDPDANYGFVGCALSSSIWRFYKDDDGEWA-AEKVIDIPAKKVEGWILPEMLKPFGAVP  311 (461)
T ss_dssp             -EEEEEES-TTEEEEEEEEE-SSTT--EEEEEEE--EEEEEEEE-ETTEEE-EEEEEEE--EE--SS---GGGGGG-EE-
T ss_pred             -EeeEEecCCCCCceEEEEecCCCCccceEEEEeccceEEEEEEcCCCCee-eeEEEECCCcccCcccccccccccccCC
Confidence             5555543332  34456664  4222334444455556555332211000 1112222                 1123


Q ss_pred             CCeeEEEEecCCCcEEEEecCCCcEEEEeCCcccccccCCCCCcCCCCc----eeeeecCCCcceeeEEEccCCCeEEEE
Q 021657          186 AAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAG----LFFQHAGHRDKVVDFHWNASDPWTVVS  261 (309)
Q Consensus       186 ~~v~~~~~~~~~~~l~~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~v~~~~~~~~~~~~~~s  261 (309)
                      .-|+.|.+|.|.++|++++=.+|.|+.||+.....+.............    +...-..-.+...-+..|.||.++.+|
T Consensus       312 ~LitDI~iSlDDrfLYvs~W~~GdvrqYDISDP~~Pkl~gqv~lGG~~~~~~~~~v~g~~l~GgPqMvqlS~DGkRlYvT  391 (461)
T PF05694_consen  312 PLITDILISLDDRFLYVSNWLHGDVRQYDISDPFNPKLVGQVFLGGSIRKGDHPVVKGKRLRGGPQMVQLSLDGKRLYVT  391 (461)
T ss_dssp             -----EEE-TTS-EEEEEETTTTEEEEEE-SSTTS-EEEEEEE-BTTTT-B--TTS------S----EEE-TTSSEEEEE
T ss_pred             CceEeEEEccCCCEEEEEcccCCcEEEEecCCCCCCcEEeEEEECcEeccCCCccccccccCCCCCeEEEccCCeEEEEE
Confidence            4579999999999999999999999999998855432211000000000    000000111234667888999999998


Q ss_pred             ec
Q 021657          262 VS  263 (309)
Q Consensus       262 ~s  263 (309)
                      .|
T Consensus       392 nS  393 (461)
T PF05694_consen  392 NS  393 (461)
T ss_dssp             --
T ss_pred             ee
Confidence            87

The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.

>PHA03098 kelch-like protein; Provisional

Probab=96.82  E-value=0.29  Score=42.56  Aligned_cols=103  Identities=10%  Similarity=0.042  Sum_probs=52.0

Q ss_pred             cEEEEEcCC-----CeEEEEEcCCCCcceEEEeeccCCceeEEEeccCCCCeEEEEcCC------CcEEEEecCCCCCCC
Q 021657          105 QEFCSVGDD-----SCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSAD------NSVRMFDRRNLTSNG  173 (309)
Q Consensus       105 ~~l~s~~~d-----g~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d------g~i~i~d~~~~~~~~  173 (309)
                      .+++.||.+     ..+..||..+.++.....+...... .+++..  ++..++.|+.+      ..+..||..+..   
T Consensus       344 ~lyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~lp~~r~~-~~~~~~--~~~iYv~GG~~~~~~~~~~v~~yd~~t~~---  417 (534)
T PHA03098        344 RIYVIGGIYNSISLNTVESWKPGESKWREEPPLIFPRYN-PCVVNV--NNLIYVIGGISKNDELLKTVECFSLNTNK---  417 (534)
T ss_pred             EEEEEeCCCCCEecceEEEEcCCCCceeeCCCcCcCCcc-ceEEEE--CCEEEEECCcCCCCcccceEEEEeCCCCe---
Confidence            677777765     3577888877664322222111111 122222  56777777742      357888987632   


Q ss_pred             CCCceeeeccCCCCeeEEEEecCCCcEEEEecCCC--------cEEEEeCCc
Q 021657          174 VGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAEDG--------LLNIWDYEK  217 (309)
Q Consensus       174 ~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~dg--------~i~iwd~~~  217 (309)
                       ...+..+....... +++ ..++. +++.|+.+.        .+.+||..+
T Consensus       418 -W~~~~~~p~~r~~~-~~~-~~~~~-iyv~GG~~~~~~~~~~~~v~~yd~~~  465 (534)
T PHA03098        418 -WSKGSPLPISHYGG-CAI-YHDGK-IYVIGGISYIDNIKVYNIVESYNPVT  465 (534)
T ss_pred             -eeecCCCCccccCc-eEE-EECCE-EEEECCccCCCCCcccceEEEecCCC
Confidence             22222222111111 222 22344 666776432        377888776

>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=96.81  E-value=0.12  Score=39.55  Aligned_cols=104  Identities=15%  Similarity=0.226  Sum_probs=68.8

Q ss_pred             eEEEEEecCCCcEEEEEcCCCe-EEEEEcCCCCcceEEEeeccCCceeEEEeccCCCCeEEEEcCC-----CcEEEEecC
Q 021657           94 VEDVTFCPSSAQEFCSVGDDSC-LILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSAD-----NSVRMFDRR  167 (309)
Q Consensus        94 v~~~~~~~~~~~~l~s~~~dg~-i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d-----g~i~i~d~~  167 (309)
                      -..|.|+|..+.-++.+-.-|+ ..++|....+.+....-.....----=.|+| ++.+|...-.|     |.|-+||.+
T Consensus        70 ~Hgi~~~p~~~ravafARrPGtf~~vfD~~~~~~pv~~~s~~~RHfyGHGvfs~-dG~~LYATEndfd~~rGViGvYd~r  148 (366)
T COG3490          70 GHGIAFHPALPRAVAFARRPGTFAMVFDPNGAQEPVTLVSQEGRHFYGHGVFSP-DGRLLYATENDFDPNRGVIGVYDAR  148 (366)
T ss_pred             cCCeecCCCCcceEEEEecCCceEEEECCCCCcCcEEEecccCceeecccccCC-CCcEEEeecCCCCCCCceEEEEecc
Confidence            3456777776566666666555 4688887776433322111111111225899 99998886544     789999999


Q ss_pred             CCCCCCCCCceeeeccCCCCeeEEEEecCCCcEEEE
Q 021657          168 NLTSNGVGSPINKFEGHSAAVLCVQWSPDKSSVFGS  203 (309)
Q Consensus       168 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~  203 (309)
                      ..     ...+-++..|.-....+.+.+||+.++++
T Consensus       149 ~~-----fqrvgE~~t~GiGpHev~lm~DGrtlvva  179 (366)
T COG3490         149 EG-----FQRVGEFSTHGIGPHEVTLMADGRTLVVA  179 (366)
T ss_pred             cc-----cceecccccCCcCcceeEEecCCcEEEEe
Confidence            64     56778888888788899999999965433

>KOG3630 consensus Nuclear pore complex, Nup214/CAN component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=96.77  E-value=0.047  Score=49.58  Aligned_cols=151  Identities=15%  Similarity=0.119  Sum_probs=91.7

Q ss_pred             CeEEEEEecCCC-cEEEEEcCCCeEEEEEcCCCCcce---EEEee------ccCCceeEEEeccCCCCeEEEEcCCCcEE
Q 021657           93 TVEDVTFCPSSA-QEFCSVGDDSCLILWDARVGTSPV---IKVEK------AHDADLHCVDWNPLDDNLILTGSADNSVR  162 (309)
Q Consensus        93 ~v~~~~~~~~~~-~~l~s~~~dg~i~iwd~~~~~~~~---~~~~~------~~~~~v~~~~~~~~~~~~l~~~~~dg~i~  162 (309)
                      +|..+...+|+. ..++..+++-.|..||+++-....   ...+.      .......++.|+|.-....+....|+.|+
T Consensus       102 pi~~~v~~~D~t~s~v~~tsng~~v~~fD~~~fs~s~~~~~~pl~~s~ts~ek~vf~~~~~wnP~vp~n~av~l~dlsl~  181 (1405)
T KOG3630|consen  102 PIVIFVCFHDATDSVVVSTSNGEAVYSFDLEEFSESRYETTVPLKNSATSFEKPVFQLKNVWNPLVPLNSAVDLSDLSLR  181 (1405)
T ss_pred             cceEEEeccCCceEEEEEecCCceEEEEehHhhhhhhhhhccccccccchhccccccccccccCCccchhhhhccccchh
Confidence            455666666642 223334445578899987543211   11111      12234568889985556677788899999


Q ss_pred             EEecCCCCCCCCCCceeeeccCCCCeeEEEEecCCCcEEEEecCCCcEEEEeCCcccccccCCCCCcCCCCceeeeecCC
Q 021657          163 MFDRRNLTSNGVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGH  242 (309)
Q Consensus       163 i~d~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~  242 (309)
                      +..+...     ...+..+. .....++++|+|.|..+ +.|-.+|++.-|.....-+....  .      .+..    .
T Consensus       182 V~~~~~~-----~~~v~s~p-~t~~~Tav~WSprGKQl-~iG~nnGt~vQy~P~leik~~ip--~------Pp~~----e  242 (1405)
T KOG3630|consen  182 VKSTKQL-----AQNVTSFP-VTNSQTAVLWSPRGKQL-FIGRNNGTEVQYEPSLEIKSEIP--E------PPVE----E  242 (1405)
T ss_pred             hhhhhhh-----hhhhcccC-cccceeeEEecccccee-eEecCCCeEEEeecccceeeccc--C------CCcC----C
Confidence            9877652     22233333 34568999999999985 58999999988876542111111  0      1111    1


Q ss_pred             CcceeeEEEccCCCeEEEEe
Q 021657          243 RDKVVDFHWNASDPWTVVSV  262 (309)
Q Consensus       243 ~~~v~~~~~~~~~~~~~~s~  262 (309)
                      ...|.+|.|-....++++-+
T Consensus       243 ~yrvl~v~Wl~t~eflvvy~  262 (1405)
T KOG3630|consen  243 NYRVLSVTWLSTQEFLVVYG  262 (1405)
T ss_pred             CcceeEEEEecceeEEEEec
Confidence            46789999987766665543

>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase

Probab=96.73  E-value=0.2  Score=39.31  Aligned_cols=58  Identities=10%  Similarity=0.222  Sum_probs=37.0

Q ss_pred             cEEEEEcCCCeEEEEEcCCCCc---ceEEEeeccCCceeEEEeccCCCCeEEEEcCCCcEEEEecCC
Q 021657          105 QEFCSVGDDSCLILWDARVGTS---PVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRN  168 (309)
Q Consensus       105 ~~l~s~~~dg~i~iwd~~~~~~---~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~  168 (309)
                      ..|+.+ ....|.+|.......   ...+.+ .-...+.+++|.   ++.++.|..+ ...+.|+.+
T Consensus       106 ~~L~va-~kk~i~i~~~~~~~~~f~~~~ke~-~lp~~~~~i~~~---~~~i~v~~~~-~f~~idl~~  166 (275)
T PF00780_consen  106 RRLCVA-VKKKILIYEWNDPRNSFSKLLKEI-SLPDPPSSIAFL---GNKICVGTSK-GFYLIDLNT  166 (275)
T ss_pred             eEEEEE-ECCEEEEEEEECCcccccceeEEE-EcCCCcEEEEEe---CCEEEEEeCC-ceEEEecCC
Confidence            444444 445899998876421   123333 345788999996   4677777654 477889986

These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity

>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length

Probab=96.72  E-value=0.14  Score=44.50  Aligned_cols=122  Identities=12%  Similarity=0.205  Sum_probs=70.6

Q ss_pred             CceeEEEeccCCCCeEEEEcCCCcEEEEecCCCCCCCCCCce--eeeccCCCCeeEEEEe--cCCCcEEEEecCCCcEEE
Q 021657          137 ADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPI--NKFEGHSAAVLCVQWS--PDKSSVFGSSAEDGLLNI  212 (309)
Q Consensus       137 ~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~--~~~~~~~~~v~~~~~~--~~~~~l~~~~~~dg~i~i  212 (309)
                      ....-+.-+. -++..++-+....+.|||.+.      +..-  ..+ .....|..+.|.  |++..++++| -.+.|.+
T Consensus        30 ~~~~li~gss-~~k~a~V~~~~~~LtIWD~~~------~~lE~~~~f-~~~~~I~dLDWtst~d~qsiLaVG-f~~~v~l  100 (631)
T PF12234_consen   30 SNPSLISGSS-IKKIAVVDSSRSELTIWDTRS------GVLEYEESF-SEDDPIRDLDWTSTPDGQSILAVG-FPHHVLL  100 (631)
T ss_pred             CCcceEeecc-cCcEEEEECCCCEEEEEEcCC------cEEEEeeee-cCCCceeeceeeecCCCCEEEEEE-cCcEEEE
Confidence            3444555554 445555555556899999987      4322  222 346789999985  7888877555 4777888


Q ss_pred             EeCCcccccccCCCCCcCCCCceeeeecCCC-cceeeEEEccCCCeEEEEecCCCCCCCCCCeEEEEEcc
Q 021657          213 WDYEKVGKKVEQGPRTTNYPAGLFFQHAGHR-DKVVDFHWNASDPWTVVSVSDDCDSTGGGGTLQIWRMS  281 (309)
Q Consensus       213 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~v~~~~~~~~~~~~~~s~s~d~~s~~~dg~v~vw~~~  281 (309)
                      |--........    ...+..-.......|+ .+|.+..|.++|..++++|          +.+.|++-.
T Consensus       101 ~~Q~R~dy~~~----~p~w~~i~~i~i~~~T~h~Igds~Wl~~G~LvV~sG----------Nqlfv~dk~  156 (631)
T PF12234_consen  101 YTQLRYDYTNK----GPSWAPIRKIDISSHTPHPIGDSIWLKDGTLVVGSG----------NQLFVFDKW  156 (631)
T ss_pred             EEccchhhhcC----CcccceeEEEEeecCCCCCccceeEecCCeEEEEeC----------CEEEEECCC
Confidence            76432111110    0011111122233444 6899999999876544433          578888754

This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.

>KOG2247 consensus WD40 repeat-containing protein [General function prediction only]

Probab=96.70  E-value=0.00018  Score=58.23  Aligned_cols=147  Identities=7%  Similarity=0.081  Sum_probs=101.9

Q ss_pred             CCCcceEEEEECCCCCEEEEecCCCcEEEEeCCccccccccCCccccccCCCCceeecCCCCCCCCcccCCCCCcCcccc
Q 021657            7 HQDNAEFALAMCPTEPYVLSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGI   86 (309)
Q Consensus         7 H~~~~V~~~~~~~~~~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   86 (309)
                      |-.+++ ...|-|.+.-|+.++.+..+..||-......                                         .
T Consensus        33 alv~pi-~~~w~~e~~nlavaca~tiv~~YD~agq~~l-----------------------------------------e   70 (615)
T KOG2247|consen   33 ALVGPI-IHRWRPEGHNLAVACANTIVIYYDKAGQVIL-----------------------------------------E   70 (615)
T ss_pred             hccccc-eeeEecCCCceehhhhhhHHHhhhhhcceec-----------------------------------------c
Confidence            333344 6678887777888888989999986532110                                         0


Q ss_pred             cccccCCeEEEEEecCCCcEEEEEcCCCeEEEEEcCCCCcceEEEeeccCCceeEEEeccCCCCeEEEEcCCCcEEEEec
Q 021657           87 YNGHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDR  166 (309)
Q Consensus        87 ~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~  166 (309)
                       -..++....++|..+++..++.+-..+.+.+||+.+.......  .+....-.-+.|++ ....++.+...|.+.+++.
T Consensus        71 -~n~tg~aldm~wDkegdvlavlAek~~piylwd~n~eytqqLE--~gg~~s~sll~wsK-g~~el~ig~~~gn~viynh  146 (615)
T KOG2247|consen   71 -LNPTGKALDMAWDKEGDVLAVLAEKTGPIYLWDVNSEYTQQLE--SGGTSSKSLLAWSK-GTPELVIGNNAGNIVIYNH  146 (615)
T ss_pred             -cCCchhHhhhhhccccchhhhhhhcCCCeeechhhhhhHHHHh--ccCcchHHHHhhcc-CCccccccccccceEEEec
Confidence             1123455678888888777777888899999999876522222  22222333378999 8889999999999999999


Q ss_pred             CCCCCCCCCCceeeeccCCCCeeEEEEecCCCcEEEEecCC
Q 021657          167 RNLTSNGVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAED  207 (309)
Q Consensus       167 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~d  207 (309)
                      ++      .+.+.....|...++++++.+.+..  +.++.|
T Consensus       147 gt------sR~iiv~Gkh~RRgtq~av~lEd~v--il~dcd  179 (615)
T KOG2247|consen  147 GT------SRRIIVMGKHQRRGTQIAVTLEDYV--ILCDCD  179 (615)
T ss_pred             cc------hhhhhhhcccccceeEEEeccccee--eecCcH
Confidence            88      5555555557788999999998863  345444

>PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus

Probab=96.62  E-value=0.32  Score=40.30  Aligned_cols=53  Identities=9%  Similarity=0.141  Sum_probs=37.6

Q ss_pred             ceeeeecCCCcceeeEEEccCCCeEEEEecCCCCCCCCCCeEEEEEccccccCChhhHhHhhhcccc
Q 021657          234 GLFFQHAGHRDKVVDFHWNASDPWTVVSVSDDCDSTGGGGTLQIWRMSDLIYRPQDEVLAELEKFKA  300 (309)
Q Consensus       234 ~~~~~~~~~~~~v~~~~~~~~~~~~~~s~s~d~~s~~~dg~v~vw~~~~~~~~~~~~~~~~~~~h~~  300 (309)
                      .....+......+.++..+|.+.+ +|. +++      =|.|.++|+.      .+..++.++|.++
T Consensus       298 ~~r~~l~D~~R~~~~i~~sP~~~l-aA~-tDs------lGRV~LiD~~------~~~vvrmWKGYRd  350 (415)
T PF14655_consen  298 PMRFGLPDSKREGESICLSPSGRL-AAV-TDS------LGRVLLIDVA------RGIVVRMWKGYRD  350 (415)
T ss_pred             ceEEeeccCCceEEEEEECCCCCE-EEE-EcC------CCcEEEEECC------CChhhhhhccCcc
Confidence            344555666677999999998664 433 233      2899999999      6777777777665

>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=96.60  E-value=0.35  Score=40.54  Aligned_cols=117  Identities=17%  Similarity=0.211  Sum_probs=67.6

Q ss_pred             CeEEEEEecCCCcEEEEEcCCC----eEEEEEcCCCCcceEEEeeccCCceeEEEeccCCCCeEEEEcCCC---------
Q 021657           93 TVEDVTFCPSSAQEFCSVGDDS----CLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADN---------  159 (309)
Q Consensus        93 ~v~~~~~~~~~~~~l~s~~~dg----~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg---------  159 (309)
                      .+....++|++..++++-+..|    .|++.|+.+++. ....+..  .....+.|.+ +++.|+-...+.         
T Consensus       125 ~~~~~~~Spdg~~la~~~s~~G~e~~~l~v~Dl~tg~~-l~d~i~~--~~~~~~~W~~-d~~~~~y~~~~~~~~~~~~~~  200 (414)
T PF02897_consen  125 SLGGFSVSPDGKRLAYSLSDGGSEWYTLRVFDLETGKF-LPDGIEN--PKFSSVSWSD-DGKGFFYTRFDEDQRTSDSGY  200 (414)
T ss_dssp             EEEEEEETTTSSEEEEEEEETTSSEEEEEEEETTTTEE-EEEEEEE--EESEEEEECT-TSSEEEEEECSTTTSS-CCGC
T ss_pred             EeeeeeECCCCCEEEEEecCCCCceEEEEEEECCCCcC-cCCcccc--cccceEEEeC-CCCEEEEEEeCcccccccCCC
Confidence            3446788999955555544444    599999998862 1222222  1223499999 766555443322         


Q ss_pred             --cEEEEecCCCCCCCCCCceeeeccCCCC--eeEEEEecCCCcEEEEecCCC---cEEEEeCCc
Q 021657          160 --SVRMFDRRNLTSNGVGSPINKFEGHSAA--VLCVQWSPDKSSVFGSSAEDG---LLNIWDYEK  217 (309)
Q Consensus       160 --~i~i~d~~~~~~~~~~~~~~~~~~~~~~--v~~~~~~~~~~~l~~~~~~dg---~i~iwd~~~  217 (309)
                        .|+.|.+.+..    ..-...+......  ...+..++|++++++......   .+.+.|+..
T Consensus       201 ~~~v~~~~~gt~~----~~d~lvfe~~~~~~~~~~~~~s~d~~~l~i~~~~~~~~s~v~~~d~~~  261 (414)
T PF02897_consen  201 PRQVYRHKLGTPQ----SEDELVFEEPDEPFWFVSVSRSKDGRYLFISSSSGTSESEVYLLDLDD  261 (414)
T ss_dssp             CEEEEEEETTS-G----GG-EEEEC-TTCTTSEEEEEE-TTSSEEEEEEESSSSEEEEEEEECCC
T ss_pred             CcEEEEEECCCCh----HhCeeEEeecCCCcEEEEEEecCcccEEEEEEEccccCCeEEEEeccc
Confidence              37888887742    1212333333322  567889999999876554443   467777765

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....

>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=96.58  E-value=0.012  Score=47.97  Aligned_cols=94  Identities=19%  Similarity=0.286  Sum_probs=59.2

Q ss_pred             CCeEEEEEcCCCCcceEEEeeccCCceeEEEeccCCCCeEEEEcCCCcEEEEecCCCCCCCCCCcee-eeccC-------
Q 021657          113 DSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPIN-KFEGH-------  184 (309)
Q Consensus       113 dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~-~~~~~-------  184 (309)
                      .+.+.|+|+.+++   ...+......+....|+| +++.++-.. ++.|.+++..+      +...+ +..+.       
T Consensus        22 ~~~y~i~d~~~~~---~~~l~~~~~~~~~~~~sP-~g~~~~~v~-~~nly~~~~~~------~~~~~lT~dg~~~i~nG~   90 (353)
T PF00930_consen   22 KGDYYIYDIETGE---ITPLTPPPPKLQDAKWSP-DGKYIAFVR-DNNLYLRDLAT------GQETQLTTDGEPGIYNGV   90 (353)
T ss_dssp             EEEEEEEETTTTE---EEESS-EETTBSEEEE-S-SSTEEEEEE-TTEEEEESSTT------SEEEESES--TTTEEESB
T ss_pred             ceeEEEEecCCCc---eEECcCCccccccceeec-CCCeeEEEe-cCceEEEECCC------CCeEEeccccceeEEcCc
Confidence            4678999998876   333333367889999999 899888874 67899998876      32221 11110       


Q ss_pred             ---------CCCeeEEEEecCCCcEEEEecCCCcEEEEeCCc
Q 021657          185 ---------SAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEK  217 (309)
Q Consensus       185 ---------~~~v~~~~~~~~~~~l~~~~~~dg~i~iwd~~~  217 (309)
                               -..-..+.|+||+++|+..--.+..|..+.+..
T Consensus        91 ~dwvyeEEv~~~~~~~~WSpd~~~la~~~~d~~~v~~~~~~~  132 (353)
T PF00930_consen   91 PDWVYEEEVFDRRSAVWWSPDSKYLAFLRFDEREVPEYPLPD  132 (353)
T ss_dssp             --HHHHHHTSSSSBSEEE-TTSSEEEEEEEE-TTS-EEEEEE
T ss_pred             cceeccccccccccceEECCCCCEEEEEEECCcCCceEEeec
Confidence                     112356889999998766666666676666544

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....

>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A

Probab=96.49  E-value=0.31  Score=38.56  Aligned_cols=150  Identities=11%  Similarity=0.193  Sum_probs=75.6

Q ss_pred             ceEEEEECCCCCEEEEecCCCcEEEEeCCccccccccCCccccccCCCCceeecCCCCCCCCcccCCCCCcCcccccccc
Q 021657           11 AEFALAMCPTEPYVLSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGH   90 (309)
Q Consensus        11 ~V~~~~~~~~~~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   90 (309)
                      .+..+.-++||+++++++.-....-||-...                                      ...+.  -..-
T Consensus       146 s~~~~~r~~dG~~vavs~~G~~~~s~~~G~~--------------------------------------~w~~~--~r~~  185 (302)
T PF14870_consen  146 SINDITRSSDGRYVAVSSRGNFYSSWDPGQT--------------------------------------TWQPH--NRNS  185 (302)
T ss_dssp             -EEEEEE-TTS-EEEEETTSSEEEEE-TT-S--------------------------------------S-EEE--E--S
T ss_pred             eeEeEEECCCCcEEEEECcccEEEEecCCCc--------------------------------------cceEE--ccCc
Confidence            6788888899998888876666667775421                                      01111  1123


Q ss_pred             cCCeEEEEEecCCCcEEEEEcCCCeEEEEEcCCCCcceEE---EeeccCCceeEEEeccCCCCeEEEEcCCCcEEEEecC
Q 021657           91 EDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPVIK---VEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRR  167 (309)
Q Consensus        91 ~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~---~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~  167 (309)
                      ..+|..|.|.|++ .+.+. ...|.|+.=+.......-..   ......-.+..++|.+ +....++|+ .|.+ +....
T Consensus       186 ~~riq~~gf~~~~-~lw~~-~~Gg~~~~s~~~~~~~~w~~~~~~~~~~~~~~ld~a~~~-~~~~wa~gg-~G~l-~~S~D  260 (302)
T PF14870_consen  186 SRRIQSMGFSPDG-NLWML-ARGGQIQFSDDPDDGETWSEPIIPIKTNGYGILDLAYRP-PNEIWAVGG-SGTL-LVSTD  260 (302)
T ss_dssp             SS-EEEEEE-TTS--EEEE-ETTTEEEEEE-TTEEEEE---B-TTSS--S-EEEEEESS-SS-EEEEES-TT-E-EEESS
T ss_pred             cceehhceecCCC-CEEEE-eCCcEEEEccCCCCccccccccCCcccCceeeEEEEecC-CCCEEEEeC-CccE-EEeCC
Confidence            5689999999997 54443 48888888762111100001   0112233478999998 667777665 4544 34444


Q ss_pred             CCCCCCCCCceeee---ccCCCCeeEEEEecCCCcEEEEecCCCcEEEE
Q 021657          168 NLTSNGVGSPINKF---EGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIW  213 (309)
Q Consensus       168 ~~~~~~~~~~~~~~---~~~~~~v~~~~~~~~~~~l~~~~~~dg~i~iw  213 (309)
                      .      ++.-.+.   ......++.|.|.++.+ -++.| .+|.+.-|
T Consensus       261 g------GktW~~~~~~~~~~~n~~~i~f~~~~~-gf~lG-~~G~ll~~  301 (302)
T PF14870_consen  261 G------GKTWQKDRVGENVPSNLYRIVFVNPDK-GFVLG-QDGVLLRY  301 (302)
T ss_dssp             T------TSS-EE-GGGTTSSS---EEEEEETTE-EEEE--STTEEEEE
T ss_pred             C------CccceECccccCCCCceEEEEEcCCCc-eEEEC-CCcEEEEe
Confidence            4      3333332   23345688899987655 35444 58877655

>PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins

Probab=96.45  E-value=0.015  Score=30.39  Aligned_cols=32  Identities=19%  Similarity=0.473  Sum_probs=26.9

Q ss_pred             CceeEEEeccCCC--CeEEEEcCCCcEEEEecCC
Q 021657          137 ADLHCVDWNPLDD--NLILTGSADNSVRMFDRRN  168 (309)
Q Consensus       137 ~~v~~~~~~~~~~--~~l~~~~~dg~i~i~d~~~  168 (309)
                      +.+.++.|+|..+  .+|+.+-.-|.|.++|+++
T Consensus         1 GAvR~~kFsP~~~~~DLL~~~E~~g~vhi~D~R~   34 (43)
T PF10313_consen    1 GAVRCCKFSPEPGGNDLLAWAEHQGRVHIVDTRS   34 (43)
T ss_pred             CCeEEEEeCCCCCcccEEEEEccCCeEEEEEccc
Confidence            3688999998445  6888888889999999995

It contains a characteristic DLL sequence motif.

>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=96.35  E-value=0.34  Score=37.50  Aligned_cols=169  Identities=13%  Similarity=0.153  Sum_probs=103.1

Q ss_pred             cCCCCCcceEEEEECCCCCEEEEecCCCcEEEEeCCccccccccCCccccccCCCCceeecCCCCCCCCcccCCCCCcCc
Q 021657            4 LTGHQDNAEFALAMCPTEPYVLSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGP   83 (309)
Q Consensus         4 l~~H~~~~V~~~~~~~~~~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   83 (309)
                      +.|-+. -|.++.|+|+.+.|++......-.||=..++......                                    
T Consensus        81 i~g~~~-nvS~LTynp~~rtLFav~n~p~~iVElt~~Gdlirti------------------------------------  123 (316)
T COG3204          81 ILGETA-NVSSLTYNPDTRTLFAVTNKPAAIVELTKEGDLIRTI------------------------------------  123 (316)
T ss_pred             cccccc-cccceeeCCCcceEEEecCCCceEEEEecCCceEEEe------------------------------------
Confidence            345555 4899999999998888877777767654433211111                                    


Q ss_pred             ccccccccCCeEEEEEecCCCcEEEEEcCCCeEEEEEcCCCCcce-----EEEe--ecc-CCceeEEEeccCCCCeEEEE
Q 021657           84 RGIYNGHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPV-----IKVE--KAH-DADLHCVDWNPLDDNLILTG  155 (309)
Q Consensus        84 ~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~-----~~~~--~~~-~~~v~~~~~~~~~~~~l~~~  155 (309)
                        .+.+ -.....+.+...+ .+.++--.++.+.++.+..+....     ...+  ..+ +...-.++|+| ....|+.+
T Consensus       124 --PL~g-~~DpE~Ieyig~n-~fvi~dER~~~l~~~~vd~~t~~~~~~~~~i~L~~~~k~N~GfEGlA~d~-~~~~l~~a  198 (316)
T COG3204         124 --PLTG-FSDPETIEYIGGN-QFVIVDERDRALYLFTVDADTTVISAKVQKIPLGTTNKKNKGFEGLAWDP-VDHRLFVA  198 (316)
T ss_pred             --cccc-cCChhHeEEecCC-EEEEEehhcceEEEEEEcCCccEEeccceEEeccccCCCCcCceeeecCC-CCceEEEE
Confidence              1112 1223556777766 666666678888888776553110     1111  112 45678999999 67777777


Q ss_pred             cCCCcEEEEecCCCCCCCCCCceeeecc-------CCCCeeEEEEecCCCcEEEEecCCCcEEEEeCCc
Q 021657          156 SADNSVRMFDRRNLTSNGVGSPINKFEG-------HSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEK  217 (309)
Q Consensus       156 ~~dg~i~i~d~~~~~~~~~~~~~~~~~~-------~~~~v~~~~~~~~~~~l~~~~~~dg~i~iwd~~~  217 (309)
                      -.-.-+.||........   -.+.....       .-..|.++.|++....|++-+.+++.+.-.|...
T Consensus       199 KEr~P~~I~~~~~~~~~---l~~~~~~~~~~~~~~f~~DvSgl~~~~~~~~LLVLS~ESr~l~Evd~~G  264 (316)
T COG3204         199 KERNPIGIFEVTQSPSS---LSVHASLDPTADRDLFVLDVSGLEFNAITNSLLVLSDESRRLLEVDLSG  264 (316)
T ss_pred             EccCCcEEEEEecCCcc---cccccccCcccccceEeeccccceecCCCCcEEEEecCCceEEEEecCC
Confidence            67777888776642110   00111111       1235678889987777888888888888777765

>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A

Probab=96.24  E-value=0.44  Score=37.73  Aligned_cols=112  Identities=14%  Similarity=0.297  Sum_probs=57.8

Q ss_pred             ccCCeEEEEEecCCCcEEEEEcCCCeEEEEEcCCCCcceEEEeeccCCceeEEEeccCCCCeEEEEcCCCcEEEEecCCC
Q 021657           90 HEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNL  169 (309)
Q Consensus        90 ~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~  169 (309)
                      -.+.+..+.-+++| .+++++..-....-||--...  -..........|.+|.|.| ++.+.+++ ..|.|++=+....
T Consensus       143 ~~gs~~~~~r~~dG-~~vavs~~G~~~~s~~~G~~~--w~~~~r~~~~riq~~gf~~-~~~lw~~~-~Gg~~~~s~~~~~  217 (302)
T PF14870_consen  143 TSGSINDITRSSDG-RYVAVSSRGNFYSSWDPGQTT--WQPHNRNSSRRIQSMGFSP-DGNLWMLA-RGGQIQFSDDPDD  217 (302)
T ss_dssp             ----EEEEEE-TTS--EEEEETTSSEEEEE-TT-SS---EEEE--SSS-EEEEEE-T-TS-EEEEE-TTTEEEEEE-TTE
T ss_pred             CcceeEeEEECCCC-cEEEEECcccEEEEecCCCcc--ceEEccCccceehhceecC-CCCEEEEe-CCcEEEEccCCCC
Confidence            34668888888988 777777666666678754433  2333334567899999999 77766654 8888888762210


Q ss_pred             -CCCCCCCceeeeccCCCCeeEEEEecCCCcEEEEecCCCcE
Q 021657          170 -TSNGVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAEDGLL  210 (309)
Q Consensus       170 -~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~dg~i  210 (309)
                       ...  .+.+..+....-.+..++|.+++. +.|+|+ .|.+
T Consensus       218 ~~~w--~~~~~~~~~~~~~~ld~a~~~~~~-~wa~gg-~G~l  255 (302)
T PF14870_consen  218 GETW--SEPIIPIKTNGYGILDLAYRPPNE-IWAVGG-SGTL  255 (302)
T ss_dssp             EEEE-----B-TTSS--S-EEEEEESSSS--EEEEES-TT-E
T ss_pred             cccc--ccccCCcccCceeeEEEEecCCCC-EEEEeC-CccE
Confidence             000  011111222233478999999887 566665 5544

>PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes []

Probab=96.15  E-value=0.88  Score=40.33  Aligned_cols=119  Identities=13%  Similarity=0.054  Sum_probs=74.9

Q ss_pred             CeEEEEEecC-CCcEEEEEcCCCeEEEEEcCC-------C----Cc-------ceEEEeeccCCceeEEEec--cCCCCe
Q 021657           93 TVEDVTFCPS-SAQEFCSVGDDSCLILWDARV-------G----TS-------PVIKVEKAHDADLHCVDWN--PLDDNL  151 (309)
Q Consensus        93 ~v~~~~~~~~-~~~~l~s~~~dg~i~iwd~~~-------~----~~-------~~~~~~~~~~~~v~~~~~~--~~~~~~  151 (309)
                      .|+-|....- +...|+.|.+||.|.+|.+++       .    +.       .+...+ .-...+++++++  . ..++
T Consensus       102 tIN~i~v~~lg~~EVLl~c~DdG~V~~Yyt~~I~~~i~~~~~~~~~~~~r~~i~P~f~~-~v~~SaWGLdIh~~~-~~rl  179 (717)
T PF08728_consen  102 TINFIKVGDLGGEEVLLLCTDDGDVLAYYTETIIEAIERFSEDNDSGFSRLKIKPFFHL-RVGASAWGLDIHDYK-KSRL  179 (717)
T ss_pred             eeeEEEecccCCeeEEEEEecCCeEEEEEHHHHHHHHHhhccccccccccccCCCCeEe-ecCCceeEEEEEecC-cceE
Confidence            4666655432 236788999999999997521       1    00       011111 234578999998  6 7788


Q ss_pred             EEEEcCCCcEEEEecCCCCCCCCCCceeeeccCCCCeeEEEEecCC-----CcEEEEecCCCcEEEEeCC
Q 021657          152 ILTGSADNSVRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWSPDK-----SSVFGSSAEDGLLNIWDYE  216 (309)
Q Consensus       152 l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-----~~l~~~~~~dg~i~iwd~~  216 (309)
                      +|+++....|.||-......   ......-..+...|-+|+|-++.     ...+++++-.|.+.+|++.
T Consensus       180 IAVSsNs~~VTVFaf~l~~~---r~~~~~s~~~~hNIP~VSFl~~~~d~~G~v~v~a~dI~G~v~~~~I~  246 (717)
T PF08728_consen  180 IAVSSNSQEVTVFAFALVDE---RFYHVPSHQHSHNIPNVSFLDDDLDPNGHVKVVATDISGEVWTFKIK  246 (717)
T ss_pred             EEEecCCceEEEEEEecccc---ccccccccccccCCCeeEeecCCCCCccceEEEEEeccCcEEEEEEE
Confidence            89888888888876554211   11111111255678889997754     1246688889999999984

RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance [].

>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length

Probab=96.13  E-value=0.26  Score=42.94  Aligned_cols=119  Identities=18%  Similarity=0.239  Sum_probs=72.9

Q ss_pred             CeEEEEEecCCCcEEEEEcCCCeEEEEEcCCCCcceEEEeeccCCceeEEEec--cCCCCeEEEEcCCCcEEEEecCC--
Q 021657           93 TVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWN--PLDDNLILTGSADNSVRMFDRRN--  168 (309)
Q Consensus        93 ~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~--~~~~~~l~~~~~dg~i~i~d~~~--  168 (309)
                      ...-+.-+.-+ +..+.-+....+.|||.+.+.......+ ...+.|..+.|.  | +++.+++.+..+.|.+|--..  
T Consensus        31 ~~~li~gss~~-k~a~V~~~~~~LtIWD~~~~~lE~~~~f-~~~~~I~dLDWtst~-d~qsiLaVGf~~~v~l~~Q~R~d  107 (631)
T PF12234_consen   31 NPSLISGSSIK-KIAVVDSSRSELTIWDTRSGVLEYEESF-SEDDPIRDLDWTSTP-DGQSILAVGFPHHVLLYTQLRYD  107 (631)
T ss_pred             CcceEeecccC-cEEEEECCCCEEEEEEcCCcEEEEeeee-cCCCceeeceeeecC-CCCEEEEEEcCcEEEEEEccchh
Confidence            34444444444 3333444456799999987774333333 457789999995  5 677777777888888875321  


Q ss_pred             -CCCCCCCCceeeec--c-CCCCeeEEEEecCCCcEEEEecCCCcEEEEeCCc
Q 021657          169 -LTSNGVGSPINKFE--G-HSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEK  217 (309)
Q Consensus       169 -~~~~~~~~~~~~~~--~-~~~~v~~~~~~~~~~~l~~~~~~dg~i~iwd~~~  217 (309)
                       ....+...+++++.  . ...+|.+..|.++|.. + +|+ ++.+.|+|-..
T Consensus       108 y~~~~p~w~~i~~i~i~~~T~h~Igds~Wl~~G~L-v-V~s-GNqlfv~dk~~  157 (631)
T PF12234_consen  108 YTNKGPSWAPIRKIDISSHTPHPIGDSIWLKDGTL-V-VGS-GNQLFVFDKWL  157 (631)
T ss_pred             hhcCCcccceeEEEEeecCCCCCccceeEecCCeE-E-EEe-CCEEEEECCCc
Confidence             01111134444442  2 2367899999999973 3 444 46788887544

This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.

>PF12657 TFIIIC_delta: Transcription factor IIIC subunit delta N-term; InterPro: IPR024761 This entry represents a domain found towards the N terminus of the 90 kDa subunit of transcription factor IIIC (also known as subunit 9 in yeast [])

Probab=96.13  E-value=0.13  Score=37.10  Aligned_cols=31  Identities=16%  Similarity=0.262  Sum_probs=26.2

Q ss_pred             CCeEEEEEecCC-----CcEEEEEcCCCeEEEEEcC
Q 021657           92 DTVEDVTFCPSS-----AQEFCSVGDDSCLILWDAR  122 (309)
Q Consensus        92 ~~v~~~~~~~~~-----~~~l~s~~~dg~i~iwd~~  122 (309)
                      ..|..++|+|.|     +.+|++...++.|.||...
T Consensus        86 ~~vv~~aWSP~Gl~~~~rClLavLTs~~~l~l~~~~  121 (173)
T PF12657_consen   86 SQVVSAAWSPSGLGPNGRCLLAVLTSNGRLSLYGPP  121 (173)
T ss_pred             ccEEEEEECCCCCCCCCceEEEEEcCCCeEEEEecC
Confidence            378999999954     5679999999999999865

The whole subunit is involved in RNA polymerase III-mediated transcription. It is possible that this N-terminal domain interacts with TFIIIC subunit 8 [].

>COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion]

Probab=96.12  E-value=0.49  Score=39.63  Aligned_cols=142  Identities=18%  Similarity=0.199  Sum_probs=88.8

Q ss_pred             cEEEEEcCCCeEEEEEcCCCCcceEEEeeccCCceeEEEeccC------CCCeEEEEcCCCcEEEEecCCCCCCCCCCce
Q 021657          105 QEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPL------DDNLILTGSADNSVRMFDRRNLTSNGVGSPI  178 (309)
Q Consensus       105 ~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~------~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~  178 (309)
                      -++..|+....++--|++.++  ++.....|...  -+.|.|.      ....-++|-.+..|.-.|.|..     +..+
T Consensus       481 li~~dg~~~~kLykmDIErGk--vveeW~~~ddv--vVqy~p~~kf~qmt~eqtlvGlS~~svFrIDPR~~-----gNKi  551 (776)
T COG5167         481 LIYLDGGERDKLYKMDIERGK--VVEEWDLKDDV--VVQYNPYFKFQQMTDEQTLVGLSDYSVFRIDPRAR-----GNKI  551 (776)
T ss_pred             eEEecCCCcccceeeecccce--eeeEeecCCcc--eeecCCchhHHhcCccceEEeecccceEEeccccc-----CCce
Confidence            344455566667777887777  67777666654  5677762      1123344555666666777763     3222


Q ss_pred             eeec----cCCCCeeEEEEecCCCcEEEEecCCCcEEEEeCCcccccccCCCCCcCCCCceeeeecCCCcceeeEEEccC
Q 021657          179 NKFE----GHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKVVDFHWNAS  254 (309)
Q Consensus       179 ~~~~----~~~~~v~~~~~~~~~~~l~~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~  254 (309)
                      ....    ..+....+..-...|  .+|+++..|-|++||.-.               ......+.+-...|..+..+.+
T Consensus       552 ~v~esKdY~tKn~Fss~~tTesG--yIa~as~kGDirLyDRig---------------~rAKtalP~lG~aIk~idvta~  614 (776)
T COG5167         552 KVVESKDYKTKNKFSSGMTTESG--YIAAASRKGDIRLYDRIG---------------KRAKTALPGLGDAIKHIDVTAN  614 (776)
T ss_pred             eeeeehhccccccccccccccCc--eEEEecCCCceeeehhhc---------------chhhhcCcccccceeeeEeecC
Confidence            2221    123334455544555  368999999999999654               1122345666778999999999


Q ss_pred             CCeEEEEecCCCCCCCCCCeEEEEEcc
Q 021657          255 DPWTVVSVSDDCDSTGGGGTLQIWRMS  281 (309)
Q Consensus       255 ~~~~~~s~s~d~~s~~~dg~v~vw~~~  281 (309)
                      |.+++++|-         ..+.+-|+.
T Consensus       615 Gk~ilaTCk---------~yllL~d~~  632 (776)
T COG5167         615 GKHILATCK---------NYLLLTDVP  632 (776)
T ss_pred             CcEEEEeec---------ceEEEEecc
Confidence            999999886         456666655

>PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins

Probab=96.10  E-value=0.033  Score=29.07  Aligned_cols=32  Identities=16%  Similarity=0.232  Sum_probs=26.9

Q ss_pred             CCeEEEEEecCCC--cEEEEEcCCCeEEEEEcCC
Q 021657           92 DTVEDVTFCPSSA--QEFCSVGDDSCLILWDARV  123 (309)
Q Consensus        92 ~~v~~~~~~~~~~--~~l~s~~~dg~i~iwd~~~  123 (309)
                      +.|.++.|+|...  .+|+-+-.-|.|.|+|+++
T Consensus         1 GAvR~~kFsP~~~~~DLL~~~E~~g~vhi~D~R~   34 (43)
T PF10313_consen    1 GAVRCCKFSPEPGGNDLLAWAEHQGRVHIVDTRS   34 (43)
T ss_pred             CCeEEEEeCCCCCcccEEEEEccCCeEEEEEccc
Confidence            4689999998764  6888888889999999985

It contains a characteristic DLL sequence motif.

>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=96.10  E-value=0.46  Score=36.64  Aligned_cols=33  Identities=15%  Similarity=0.123  Sum_probs=25.0

Q ss_pred             CCCeeEEEEecCCCcEEEEecCCCcEEEEeCCc
Q 021657          185 SAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEK  217 (309)
Q Consensus       185 ~~~v~~~~~~~~~~~l~~~~~~dg~i~iwd~~~  217 (309)
                      ...|-+|+.+.+...+.++.-..+..-+||..+
T Consensus       279 anYigsiA~n~~~glV~lTSP~GN~~vi~da~t  311 (366)
T COG3490         279 ANYIGSIAANRRDGLVALTSPRGNRAVIWDAAT  311 (366)
T ss_pred             HhhhhheeecccCCeEEEecCCCCeEEEEEcCC
Confidence            346778898877776666666677788999988

>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]

Probab=96.03  E-value=0.27  Score=36.64  Aligned_cols=96  Identities=9%  Similarity=0.105  Sum_probs=69.5

Q ss_pred             eEEEEEecCCCcEEEEEcCCCeEEEEE--cCCCCc---ceEEEeec----cCCceeEEEeccCCCCeEEEEcCCCcEEEE
Q 021657           94 VEDVTFCPSSAQEFCSVGDDSCLILWD--ARVGTS---PVIKVEKA----HDADLHCVDWNPLDDNLILTGSADNSVRMF  164 (309)
Q Consensus        94 v~~~~~~~~~~~~l~s~~~dg~i~iwd--~~~~~~---~~~~~~~~----~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~  164 (309)
                      -+.++|+.+.+.+.++-+.+-+|.-||  ..++..   ..+..+..    .....-.+++.- +|++.++.-..++|.-.
T Consensus       160 sNgl~Wd~d~K~fY~iDsln~~V~a~dyd~~tG~~snr~~i~dlrk~~~~e~~~PDGm~ID~-eG~L~Va~~ng~~V~~~  238 (310)
T KOG4499|consen  160 SNGLAWDSDAKKFYYIDSLNYEVDAYDYDCPTGDLSNRKVIFDLRKSQPFESLEPDGMTIDT-EGNLYVATFNGGTVQKV  238 (310)
T ss_pred             CccccccccCcEEEEEccCceEEeeeecCCCcccccCcceeEEeccCCCcCCCCCCcceEcc-CCcEEEEEecCcEEEEE
Confidence            457889887767777878888888888  444431   11222211    112234566676 88999999999999999


Q ss_pred             ecCCCCCCCCCCceeeeccCCCCeeEEEEecC
Q 021657          165 DRRNLTSNGVGSPINKFEGHSAAVLCVQWSPD  196 (309)
Q Consensus       165 d~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~  196 (309)
                      |..+      ++.+.+++-....|++++|--.
T Consensus       239 dp~t------GK~L~eiklPt~qitsccFgGk  264 (310)
T KOG4499|consen  239 DPTT------GKILLEIKLPTPQITSCCFGGK  264 (310)
T ss_pred             CCCC------CcEEEEEEcCCCceEEEEecCC
Confidence            9999      9999999988889999999744

>COG5276 Uncharacterized conserved protein [Function unknown]

Probab=96.02  E-value=0.51  Score=36.55  Aligned_cols=118  Identities=18%  Similarity=0.094  Sum_probs=79.4

Q ss_pred             cCCeEEEEEecCCCcEEEEEcCCCeEEEEEcCCCCcceEEEeeccCCceeEEEeccCCCCeEEEEcCCCcEEEEecCCCC
Q 021657           91 EDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLT  170 (309)
Q Consensus        91 ~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~  170 (309)
                      ..-+.++.++.+   +...+..+.-++|.|+.+...+....+.....--.++..   .|++...+..|.-+.+.|+.+++
T Consensus        86 ~~l~~Dv~vse~---yvyvad~ssGL~IvDIS~P~sP~~~~~lnt~gyaygv~v---sGn~aYVadlddgfLivdvsdps  159 (370)
T COG5276          86 RDLFADVRVSEE---YVYVADWSSGLRIVDISTPDSPTLIGFLNTDGYAYGVYV---SGNYAYVADLDDGFLIVDVSDPS  159 (370)
T ss_pred             hhhhheeEeccc---EEEEEcCCCceEEEeccCCCCcceeccccCCceEEEEEe---cCCEEEEeeccCcEEEEECCCCC
Confidence            345667777653   455666777799999999887666555444444455554   68899888877778899999865


Q ss_pred             CCCCCCceeeeccCCCCeeEEEEecCCCcEEEEecCCCcEEEEeCCcccc
Q 021657          171 SNGVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGK  220 (309)
Q Consensus       171 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~dg~i~iwd~~~~~~  220 (309)
                      +   .....++......-..++.+-+-  -+ .+..|+-+.|-|+.+...
T Consensus       160 s---P~lagrya~~~~d~~~v~ISGn~--AY-vA~~d~GL~ivDVSnp~s  203 (370)
T COG5276         160 S---PQLAGRYALPGGDTHDVAISGNY--AY-VAWRDGGLTIVDVSNPHS  203 (370)
T ss_pred             C---ceeeeeeccCCCCceeEEEecCe--EE-EEEeCCCeEEEEccCCCC
Confidence            3   33334444444444667777554  33 556788899999988443

>PF14761 HPS3_N: Hermansky-Pudlak syndrome 3

Probab=95.99  E-value=0.42  Score=35.29  Aligned_cols=118  Identities=8%  Similarity=0.101  Sum_probs=68.0

Q ss_pred             CeEEEEcCCCcEEEEecCCCCCCCCCCceeeeccCCCCeeEEEEecCCCcEEEEecCCC-----cEEEE---eCCc-ccc
Q 021657          150 NLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAEDG-----LLNIW---DYEK-VGK  220 (309)
Q Consensus       150 ~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~dg-----~i~iw---d~~~-~~~  220 (309)
                      +.|+.+.....|.+|++.+..    .+++.+|.. -+.|..+.++..|.+++..-.++.     .+|+|   +... ..+
T Consensus        29 d~Lfva~~g~~Vev~~l~~~~----~~~~~~F~T-v~~V~~l~y~~~GDYlvTlE~k~~~~~~~fvR~Y~NWr~~~~~~~  103 (215)
T PF14761_consen   29 DALFVAASGCKVEVYDLEQEE----CPLLCTFST-VGRVLQLVYSEAGDYLVTLEEKNKRSPVDFVRAYFNWRSQKEENS  103 (215)
T ss_pred             ceEEEEcCCCEEEEEEcccCC----CceeEEEcc-hhheeEEEeccccceEEEEEeecCCccceEEEEEEEhhhhcccCC
Confidence            555555677889999998432    667777774 478999999999998764433322     45654   3221 111


Q ss_pred             ccc---------CCCCCcCCCCceeeeecCCCcceeeEEEccCCCeEEEEecCCCCCCCCCCeEEEEEccc
Q 021657          221 KVE---------QGPRTTNYPAGLFFQHAGHRDKVVDFHWNASDPWTVVSVSDDCDSTGGGGTLQIWRMSD  282 (309)
Q Consensus       221 ~~~---------~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~s~d~~s~~~dg~v~vw~~~~  282 (309)
                      +..         ..........-.+.++. -+.++.+++-.|-.+.|++++.         +++.+|.+..
T Consensus       104 ~v~vRiaG~~v~~~~~~~~~~qleiiElP-l~~~p~ciaCC~~tG~LlVg~~---------~~l~lf~l~~  164 (215)
T PF14761_consen  104 PVRVRIAGHRVTPSFNESSKDQLEIIELP-LSEPPLCIACCPVTGNLLVGCG---------NKLVLFTLKY  164 (215)
T ss_pred             cEEEEEcccccccCCCCccccceEEEEec-CCCCCCEEEecCCCCCEEEEcC---------CEEEEEEEEE
Confidence            111         00000000001122222 2456788888887776665433         6899999874

>KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only]

Probab=95.98  E-value=0.016  Score=51.20  Aligned_cols=127  Identities=22%  Similarity=0.327  Sum_probs=78.0

Q ss_pred             cccccccCCeEEEEEecCCCcEEEEEcCCCeEEEEEcCC--CCcc---eEEEeeccCCceeEEEeccC--CCCeEEEEcC
Q 021657           85 GIYNGHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARV--GTSP---VIKVEKAHDADLHCVDWNPL--DDNLILTGSA  157 (309)
Q Consensus        85 ~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~--~~~~---~~~~~~~~~~~v~~~~~~~~--~~~~l~~~~~  157 (309)
                      ..+++..+.|-.+.|-......+.  -.-|.+.+||+..  ++..   .++........+.-+.|.|.  +..++..+-.
T Consensus       126 ~l~kgf~G~v~dl~fah~~~pk~~--~~vg~lfVy~vd~l~G~iq~~l~v~~~~p~gs~~~~V~wcp~~~~~~~ic~~~~  203 (1283)
T KOG1916|consen  126 ELAKGFPGGVGDLQFAHTKCPKGR--RLVGELFVYDVDVLQGEIQPQLEVTPITPYGSDPQLVSWCPIAVNKVYICYGLK  203 (1283)
T ss_pred             HHHhcCCCCcccccccccCChHHH--HHhhhhheeehHhhccccccceEEeecCcCCCCcceeeecccccccceeeeccC
Confidence            445677888888888543211222  3347789998763  2211   12222333344556666552  4567777778


Q ss_pred             CCcEEEEecCCCCCCCCCCceeeeccCCCCeeEE-----------EEecCCCcEEEEecCCCcEEEEeCCccccc
Q 021657          158 DNSVRMFDRRNLTSNGVGSPINKFEGHSAAVLCV-----------QWSPDKSSVFGSSAEDGLLNIWDYEKVGKK  221 (309)
Q Consensus       158 dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~v~~~-----------~~~~~~~~l~~~~~~dg~i~iwd~~~~~~~  221 (309)
                      +++|++......       ...-+.+|...+..+           .++|||. +||.++.||.++.|.+.-.++.
T Consensus       204 ~~~i~lL~~~ra-------~~~l~rsHs~~~~d~a~~~~g~~~l~~lSpDGt-v~a~a~~dG~v~f~Qiyi~g~~  270 (1283)
T KOG1916|consen  204 GGEIRLLNINRA-------LRSLFRSHSQRVTDMAFFAEGVLKLASLSPDGT-VFAWAISDGSVGFYQIYITGKI  270 (1283)
T ss_pred             CCceeEeeechH-------HHHHHHhcCCCcccHHHHhhchhhheeeCCCCc-EEEEeecCCccceeeeeeeccc
Confidence            899998777642       123344455544433           3689999 5789999999999998776654

>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1

Probab=95.97  E-value=0.29  Score=38.99  Aligned_cols=103  Identities=14%  Similarity=0.153  Sum_probs=61.3

Q ss_pred             EEEEcCCCeEEEEEcCCCCcceEEEeecc----------CCceeEEEeccCCCCeEEEEcC--------CC--cEEEEec
Q 021657          107 FCSVGDDSCLILWDARVGTSPVIKVEKAH----------DADLHCVDWNPLDDNLILTGSA--------DN--SVRMFDR  166 (309)
Q Consensus       107 l~s~~~dg~i~iwd~~~~~~~~~~~~~~~----------~~~v~~~~~~~~~~~~l~~~~~--------dg--~i~i~d~  166 (309)
                      ++--+.+|.|+--|+.............-          .+.-.-+++++ ..+.|.+.-.        |+  .|-++|+
T Consensus       198 ~~F~Sy~G~v~~~dlsg~~~~~~~~~~~~t~~e~~~~WrPGG~Q~~A~~~-~~~rlyvLMh~g~~gsHKdpgteVWv~D~  276 (342)
T PF06433_consen  198 LYFVSYEGNVYSADLSGDSAKFGKPWSLLTDAEKADGWRPGGWQLIAYHA-ASGRLYVLMHQGGEGSHKDPGTEVWVYDL  276 (342)
T ss_dssp             EEEEBTTSEEEEEEETTSSEEEEEEEESS-HHHHHTTEEE-SSS-EEEET-TTTEEEEEEEE--TT-TTS-EEEEEEEET
T ss_pred             EEEEecCCEEEEEeccCCcccccCcccccCccccccCcCCcceeeeeecc-ccCeEEEEecCCCCCCccCCceEEEEEEC
Confidence            33356778888877765542222222110          12233466666 3333333211        11  4777888


Q ss_pred             CCCCCCCCCCceeeeccCCCCeeEEEEecCCCcEE-EEecCCCcEEEEeCCc
Q 021657          167 RNLTSNGVGSPINKFEGHSAAVLCVQWSPDKSSVF-GSSAEDGLLNIWDYEK  217 (309)
Q Consensus       167 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-~~~~~dg~i~iwd~~~  217 (309)
                      .+      .+.+.++.. ..++.+|+.+.+.+-+| +....++.+.+||..+
T Consensus       277 ~t------~krv~Ri~l-~~~~~Si~Vsqd~~P~L~~~~~~~~~l~v~D~~t  321 (342)
T PF06433_consen  277 KT------HKRVARIPL-EHPIDSIAVSQDDKPLLYALSAGDGTLDVYDAAT  321 (342)
T ss_dssp             TT------TEEEEEEEE-EEEESEEEEESSSS-EEEEEETTTTEEEEEETTT
T ss_pred             CC------CeEEEEEeC-CCccceEEEccCCCcEEEEEcCCCCeEEEEeCcC
Confidence            88      888888874 45688999998776444 4456689999999998

4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....

>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]

Probab=95.92  E-value=1.1  Score=39.37  Aligned_cols=111  Identities=16%  Similarity=0.163  Sum_probs=64.0

Q ss_pred             EEEEEecCCCcEEEEEcCC------CeEEEEEcCCCCcceEEEeeccCCceeEEEeccCCCCeEEEEcCCCc-----EEE
Q 021657           95 EDVTFCPSSAQEFCSVGDD------SCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNS-----VRM  163 (309)
Q Consensus        95 ~~~~~~~~~~~~l~s~~~d------g~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~-----i~i  163 (309)
                      .+++... + .++++||.|      ..+..||..+.++.....+............   ++.+.++|+.||.     +..
T Consensus       326 ~~~~~~~-~-~lYv~GG~~~~~~~l~~ve~YD~~~~~W~~~a~M~~~R~~~~v~~l---~g~iYavGG~dg~~~l~svE~  400 (571)
T KOG4441|consen  326 VGVAVLN-G-KLYVVGGYDSGSDRLSSVERYDPRTNQWTPVAPMNTKRSDFGVAVL---DGKLYAVGGFDGEKSLNSVEC  400 (571)
T ss_pred             ccEEEEC-C-EEEEEccccCCCcccceEEEecCCCCceeccCCccCccccceeEEE---CCEEEEEeccccccccccEEE
Confidence            3444444 3 788899988      4577888887775333333332222222222   7889999999974     667


Q ss_pred             EecCCCCCCCCCCceeeeccCCCCeeEEEEecCCCcEEEEecCCCc------EEEEeCCc
Q 021657          164 FDRRNLTSNGVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAEDGL------LNIWDYEK  217 (309)
Q Consensus       164 ~d~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~dg~------i~iwd~~~  217 (309)
                      ||.++..    ...+..+..   .....+...-+..++++|+.++.      +..||..+
T Consensus       401 YDp~~~~----W~~va~m~~---~r~~~gv~~~~g~iYi~GG~~~~~~~l~sve~YDP~t  453 (571)
T KOG4441|consen  401 YDPVTNK----WTPVAPMLT---RRSGHGVAVLGGKLYIIGGGDGSSNCLNSVECYDPET  453 (571)
T ss_pred             ecCCCCc----ccccCCCCc---ceeeeEEEEECCEEEEEcCcCCCccccceEEEEcCCC
Confidence            8877633    333333332   23333333334447888886543      56677665

>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain

Probab=95.88  E-value=0.81  Score=37.69  Aligned_cols=109  Identities=10%  Similarity=0.143  Sum_probs=57.1

Q ss_pred             CCeEEEEEecCCCcEEEEEc-----------CCC-eEEEEEcCC--CCcceEEEeeccCCceeEEEeccCCCCeEEEEcC
Q 021657           92 DTVEDVTFCPSSAQEFCSVG-----------DDS-CLILWDARV--GTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSA  157 (309)
Q Consensus        92 ~~v~~~~~~~~~~~~l~s~~-----------~dg-~i~iwd~~~--~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~  157 (309)
                      .....|+|.++| +++++..           ..+ .|.+++-..  ++......+...-.....+++.+ ++ +++ +..
T Consensus        14 ~~P~~ia~d~~G-~l~V~e~~~y~~~~~~~~~~~~rI~~l~d~dgdG~~d~~~vfa~~l~~p~Gi~~~~-~G-lyV-~~~   89 (367)
T TIGR02604        14 RNPIAVCFDERG-RLWVAEGITYSRPAGRQGPLGDRILILEDADGDGKYDKSNVFAEELSMVTGLAVAV-GG-VYV-ATP   89 (367)
T ss_pred             CCCceeeECCCC-CEEEEeCCcCCCCCCCCCCCCCEEEEEEcCCCCCCcceeEEeecCCCCccceeEec-CC-EEE-eCC
Confidence            345688999998 6665542           223 677776432  23222344444444568899988 77 444 444


Q ss_pred             CCcEEEEecCCCCCCC-CCCce-eeeccC----CCCeeEEEEecCCCcEEEEec
Q 021657          158 DNSVRMFDRRNLTSNG-VGSPI-NKFEGH----SAAVLCVQWSPDKSSVFGSSA  205 (309)
Q Consensus       158 dg~i~i~d~~~~~~~~-~~~~~-~~~~~~----~~~v~~~~~~~~~~~l~~~~~  205 (309)
                      ....++.|........ ..+.+ ..+...    ....+.++|.|||. |+++-+
T Consensus        90 ~~i~~~~d~~gdg~ad~~~~~l~~~~~~~~~~~~~~~~~l~~gpDG~-LYv~~G  142 (367)
T TIGR02604        90 PDILFLRDKDGDDKADGEREVLLSGFGGQINNHHHSLNSLAWGPDGW-LYFNHG  142 (367)
T ss_pred             CeEEEEeCCCCCCCCCCccEEEEEccCCCCCcccccccCceECCCCC-EEEecc
Confidence            4433344543211000 01122 223221    24477899999998 444433

All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.

>PHA02790 Kelch-like protein; Provisional

Probab=95.82  E-value=0.74  Score=39.46  Aligned_cols=100  Identities=7%  Similarity=-0.039  Sum_probs=51.1

Q ss_pred             cEEEEEcCCC---eEEEEEcCCCCcceEEEeeccCCceeEEEeccCCCCeEEEEcCCCcEEEEecCCCCCCCCCCceeee
Q 021657          105 QEFCSVGDDS---CLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKF  181 (309)
Q Consensus       105 ~~l~s~~~dg---~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~  181 (309)
                      .+.+.||.++   .+..||.++.++...............+.+   ++...+.|+   .+.+||.++.+    +..+..+
T Consensus       364 ~IYviGG~~~~~~~ve~ydp~~~~W~~~~~m~~~r~~~~~~~~---~~~IYv~GG---~~e~ydp~~~~----W~~~~~m  433 (480)
T PHA02790        364 VIYVIGGHSETDTTTEYLLPNHDQWQFGPSTYYPHYKSCALVF---GRRLFLVGR---NAEFYCESSNT----WTLIDDP  433 (480)
T ss_pred             EEEEecCcCCCCccEEEEeCCCCEEEeCCCCCCccccceEEEE---CCEEEEECC---ceEEecCCCCc----EeEcCCC
Confidence            7778877653   467888877664322222111112222222   566777764   57789887632    3333333


Q ss_pred             ccCCCCeeEEEEecCCCcEEEEecCC-----CcEEEEeCCc
Q 021657          182 EGHSAAVLCVQWSPDKSSVFGSSAED-----GLLNIWDYEK  217 (309)
Q Consensus       182 ~~~~~~v~~~~~~~~~~~l~~~~~~d-----g~i~iwd~~~  217 (309)
                      ....... +++.. +++ +++.|+.+     ..+..||...
T Consensus       434 ~~~r~~~-~~~v~-~~~-IYviGG~~~~~~~~~ve~Yd~~~  471 (480)
T PHA02790        434 IYPRDNP-ELIIV-DNK-LLLIGGFYRGSYIDTIEVYNNRT  471 (480)
T ss_pred             CCCcccc-EEEEE-CCE-EEEECCcCCCcccceEEEEECCC
Confidence            3222222 22222 344 67788754     3455666554

>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2

Probab=95.79  E-value=0.63  Score=35.75  Aligned_cols=114  Identities=14%  Similarity=0.021  Sum_probs=69.5

Q ss_pred             CeEEEEEecCCCcEEEEEcCCC--eEEEEEcCCCCcceEEEeeccCCceeEEEeccCCCCeEEEEcCCCcEEEEecCCCC
Q 021657           93 TVEDVTFCPSSAQEFCSVGDDS--CLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLT  170 (309)
Q Consensus        93 ~v~~~~~~~~~~~~l~s~~~dg--~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~  170 (309)
                      -...+.|..++ .++-+.+.-|  .|+.+|+.+++......+. ..----.++..  ++......=.++...+||..+  
T Consensus        46 FTQGL~~~~~g-~LyESTG~yG~S~l~~~d~~tg~~~~~~~l~-~~~FgEGit~~--~d~l~qLTWk~~~~f~yd~~t--  119 (264)
T PF05096_consen   46 FTQGLEFLDDG-TLYESTGLYGQSSLRKVDLETGKVLQSVPLP-PRYFGEGITIL--GDKLYQLTWKEGTGFVYDPNT--  119 (264)
T ss_dssp             EEEEEEEEETT-EEEEEECSTTEEEEEEEETTTSSEEEEEE-T-TT--EEEEEEE--TTEEEEEESSSSEEEEEETTT--
T ss_pred             cCccEEecCCC-EEEEeCCCCCcEEEEEEECCCCcEEEEEECC-ccccceeEEEE--CCEEEEEEecCCeEEEEcccc--
Confidence            35677887777 7778887766  7999999998832222221 12222334443  345555666789999999998  


Q ss_pred             CCCCCCceeeeccCCCCeeEEEEecCCCcEEEEecCCCcEEEEeCCcccc
Q 021657          171 SNGVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGK  220 (309)
Q Consensus       171 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~dg~i~iwd~~~~~~  220 (309)
                          .+.+.++.-. +.=..++  .++..|+++ .....++++|-.++..
T Consensus       120 ----l~~~~~~~y~-~EGWGLt--~dg~~Li~S-DGS~~L~~~dP~~f~~  161 (264)
T PF05096_consen  120 ----LKKIGTFPYP-GEGWGLT--SDGKRLIMS-DGSSRLYFLDPETFKE  161 (264)
T ss_dssp             ----TEEEEEEE-S-SS--EEE--ECSSCEEEE--SSSEEEEE-TTT-SE
T ss_pred             ----ceEEEEEecC-CcceEEE--cCCCEEEEE-CCccceEEECCcccce
Confidence                7778777643 3334455  567766644 4466788888776443

3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.

>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]

Probab=95.65  E-value=0.64  Score=34.79  Aligned_cols=99  Identities=13%  Similarity=0.202  Sum_probs=61.4

Q ss_pred             eeEEEEecCCCcEEEEecCCCcEEEEeCCcccccccCCCCCcCCCCceeeeecC----CCcceeeEEEccCCCeEEEEec
Q 021657          188 VLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAG----HRDKVVDFHWNASDPWTVVSVS  263 (309)
Q Consensus       188 v~~~~~~~~~~~l~~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~v~~~~~~~~~~~~~~s~s  263 (309)
                      -+.++|+.+.+.++..-+.+-.|.-||.....-...        ....++.+..    .....-.++...+|...+++-+
T Consensus       160 sNgl~Wd~d~K~fY~iDsln~~V~a~dyd~~tG~~s--------nr~~i~dlrk~~~~e~~~PDGm~ID~eG~L~Va~~n  231 (310)
T KOG4499|consen  160 SNGLAWDSDAKKFYYIDSLNYEVDAYDYDCPTGDLS--------NRKVIFDLRKSQPFESLEPDGMTIDTEGNLYVATFN  231 (310)
T ss_pred             CccccccccCcEEEEEccCceEEeeeecCCCccccc--------CcceeEEeccCCCcCCCCCCcceEccCCcEEEEEec
Confidence            467899988887777888888888888544221111        0112222221    1111233444555554443332


Q ss_pred             CCCCCCCCCCeEEEEEccccccCChhhHhHhhhcccceEEEeeeC
Q 021657          264 DDCDSTGGGGTLQIWRMSDLIYRPQDEVLAELEKFKAHVISCTSK  308 (309)
Q Consensus       264 ~d~~s~~~dg~v~vw~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~  308 (309)
                       .       ++|...|..      +++.+.+++-....|++++|-
T Consensus       232 -g-------~~V~~~dp~------tGK~L~eiklPt~qitsccFg  262 (310)
T KOG4499|consen  232 -G-------GTVQKVDPT------TGKILLEIKLPTPQITSCCFG  262 (310)
T ss_pred             -C-------cEEEEECCC------CCcEEEEEEcCCCceEEEEec
Confidence             2       799999998      899999988888899999883

>COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion]

Probab=95.38  E-value=0.48  Score=39.67  Aligned_cols=139  Identities=13%  Similarity=0.138  Sum_probs=85.4

Q ss_pred             CCCCCCCcccCCCCCcCcccccccccCCeEEEEEecCC-------CcEEEEEcCCCeEEEEEcCCCCcceEEE-e--ecc
Q 021657           66 PKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSS-------AQEFCSVGDDSCLILWDARVGTSPVIKV-E--KAH  135 (309)
Q Consensus        66 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-------~~~l~s~~~dg~i~iwd~~~~~~~~~~~-~--~~~  135 (309)
                      .+.....++-.+...++.+..+.-|...  -+.|.|..       .+.|+--+ +..|.-.|.+......... .  ...
T Consensus       485 dg~~~~kLykmDIErGkvveeW~~~ddv--vVqy~p~~kf~qmt~eqtlvGlS-~~svFrIDPR~~gNKi~v~esKdY~t  561 (776)
T COG5167         485 DGGERDKLYKMDIERGKVVEEWDLKDDV--VVQYNPYFKFQQMTDEQTLVGLS-DYSVFRIDPRARGNKIKVVESKDYKT  561 (776)
T ss_pred             cCCCcccceeeecccceeeeEeecCCcc--eeecCCchhHHhcCccceEEeec-ccceEEecccccCCceeeeeehhccc
Confidence            3444455566667777777777666654  46777753       13344444 4445444765443211111 1  111


Q ss_pred             CCceeEEEeccCCCCeEEEEcCCCcEEEEecCCCCCCCCCCceeeeccCCCCeeEEEEecCCCcEEEEecCCCcEEEEeC
Q 021657          136 DADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDY  215 (309)
Q Consensus       136 ~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~dg~i~iwd~  215 (309)
                      .....|..-.  ...++++++..|-|++||.-.      .+....+.+....|..|..+.+|.+++|+|  ...+.+-|+
T Consensus       562 Kn~Fss~~tT--esGyIa~as~kGDirLyDRig------~rAKtalP~lG~aIk~idvta~Gk~ilaTC--k~yllL~d~  631 (776)
T COG5167         562 KNKFSSGMTT--ESGYIAAASRKGDIRLYDRIG------KRAKTALPGLGDAIKHIDVTANGKHILATC--KNYLLLTDV  631 (776)
T ss_pred             cccccccccc--cCceEEEecCCCceeeehhhc------chhhhcCcccccceeeeEeecCCcEEEEee--cceEEEEec
Confidence            2223333222  467999999999999999764      344445667778899999999999988666  467888887


Q ss_pred             Cc
Q 021657          216 EK  217 (309)
Q Consensus       216 ~~  217 (309)
                      +-
T Consensus       632 ~i  633 (776)
T COG5167         632 PI  633 (776)
T ss_pred             cc
Confidence            64

>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase

Probab=95.32  E-value=1.1  Score=35.20  Aligned_cols=147  Identities=14%  Similarity=0.185  Sum_probs=80.3

Q ss_pred             cEEEEEcCCCeEEEEEcCCCCcceEEEeeccCCceeEEEeccCCCCeEEEEcCCCcEEEEecCCCCCCCCCCcee-----
Q 021657          105 QEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPIN-----  179 (309)
Q Consensus       105 ~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~-----  179 (309)
                      ..|+.|.++| +.+++...... ....  .+...|..+...| +-+.|++-+ |+.++++++.............     
T Consensus         8 ~~L~vGt~~G-l~~~~~~~~~~-~~~i--~~~~~I~ql~vl~-~~~~llvLs-d~~l~~~~L~~l~~~~~~~~~~~~~~~   81 (275)
T PF00780_consen    8 DRLLVGTEDG-LYVYDLSDPSK-PTRI--LKLSSITQLSVLP-ELNLLLVLS-DGQLYVYDLDSLEPVSTSAPLAFPKSR   81 (275)
T ss_pred             CEEEEEECCC-EEEEEecCCcc-ceeE--eecceEEEEEEec-ccCEEEEEc-CCccEEEEchhhccccccccccccccc
Confidence            6788888998 99999832221 2222  2334499999999 667666654 5999999998743221111000     


Q ss_pred             ----eeccCCCCeeEEE--EecCCCcEEEEecCCCcEEEEeCCcccccccCCCCCcCCCCceeeeecCCCcceeeEEEcc
Q 021657          180 ----KFEGHSAAVLCVQ--WSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKVVDFHWNA  253 (309)
Q Consensus       180 ----~~~~~~~~v~~~~--~~~~~~~l~~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~  253 (309)
                          .+. ....+...+  -...+...++.+. ...|.+|..........          ....++. -...+.+++|.+
T Consensus        82 ~~~~~~~-~~~~v~~f~~~~~~~~~~~L~va~-kk~i~i~~~~~~~~~f~----------~~~ke~~-lp~~~~~i~~~~  148 (275)
T PF00780_consen   82 SLPTKLP-ETKGVSFFAVNGGHEGSRRLCVAV-KKKILIYEWNDPRNSFS----------KLLKEIS-LPDPPSSIAFLG  148 (275)
T ss_pred             ccccccc-ccCCeeEEeeccccccceEEEEEE-CCEEEEEEEECCccccc----------ceeEEEE-cCCCcEEEEEeC
Confidence                111 122344444  1233333343443 45899998876211110          1222222 236778888883


Q ss_pred             CCCeEEEEecCCCCCCCCCCeEEEEEcc
Q 021657          254 SDPWTVVSVSDDCDSTGGGGTLQIWRMS  281 (309)
Q Consensus       254 ~~~~~~~s~s~d~~s~~~dg~v~vw~~~  281 (309)
                        +.++++..         ....+.|+.
T Consensus       149 --~~i~v~~~---------~~f~~idl~  165 (275)
T PF00780_consen  149 --NKICVGTS---------KGFYLIDLN  165 (275)
T ss_pred             --CEEEEEeC---------CceEEEecC
Confidence              44444332         356677776

These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity

>PHA03098 kelch-like protein; Provisional

Probab=95.30  E-value=1.1  Score=39.12  Aligned_cols=103  Identities=6%  Similarity=0.078  Sum_probs=51.8

Q ss_pred             cEEEEEcCC------CeEEEEEcCCCCcceEEEeeccCCceeEEEeccCCCCeEEEEcCCC--------cEEEEecCCCC
Q 021657          105 QEFCSVGDD------SCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADN--------SVRMFDRRNLT  170 (309)
Q Consensus       105 ~~l~s~~~d------g~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg--------~i~i~d~~~~~  170 (309)
                      .+++.||.+      ..+..||..+.++............. ++.. . ++..++.|+.++        .+..||..+.+
T Consensus       391 ~iYv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~p~~r~~~-~~~~-~-~~~iyv~GG~~~~~~~~~~~~v~~yd~~~~~  467 (534)
T PHA03098        391 LIYVIGGISKNDELLKTVECFSLNTNKWSKGSPLPISHYGG-CAIY-H-DGKIYVIGGISYIDNIKVYNIVESYNPVTNK  467 (534)
T ss_pred             EEEEECCcCCCCcccceEEEEeCCCCeeeecCCCCccccCc-eEEE-E-CCEEEEECCccCCCCCcccceEEEecCCCCc
Confidence            677777632      45888998876643322221111111 2222 2 566777776532        37888987632


Q ss_pred             CCCCCCceeeeccCCCCeeEEEEecCCCcEEEEecCC-----CcEEEEeCCc
Q 021657          171 SNGVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAED-----GLLNIWDYEK  217 (309)
Q Consensus       171 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~d-----g~i~iwd~~~  217 (309)
                          ...+..+.........+.+  ++. +++.|+.+     ..+.+||...
T Consensus       468 ----W~~~~~~~~~r~~~~~~~~--~~~-iyv~GG~~~~~~~~~v~~yd~~~  512 (534)
T PHA03098        468 ----WTELSSLNFPRINASLCIF--NNK-IYVVGGDKYEYYINEIEVYDDKT  512 (534)
T ss_pred             ----eeeCCCCCcccccceEEEE--CCE-EEEEcCCcCCcccceeEEEeCCC
Confidence                2222222211111122222  444 66677654     4677777765

>KOG2377 consensus Uncharacterized conserved protein [Function unknown]

Probab=95.28  E-value=0.73  Score=38.06  Aligned_cols=108  Identities=9%  Similarity=0.163  Sum_probs=73.7

Q ss_pred             cccCCeEEEEEecCCCcEEEEEcCCCeEEEEEcCCCCcc--eEEEeeccCCceeEEEeccCCCCeEEEEcCCCcEEEEec
Q 021657           89 GHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSP--VIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDR  166 (309)
Q Consensus        89 ~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~--~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~  166 (309)
                      ...++|.++.|++|. +.+|.--.+.+|.+.+....+..  .....+.....|....|.. + .-+|.-...| +.+|-.
T Consensus        64 ~d~G~I~SIkFSlDn-kilAVQR~~~~v~f~nf~~d~~~l~~~~~ck~k~~~IlGF~W~~-s-~e~A~i~~~G-~e~y~v  139 (657)
T KOG2377|consen   64 DDKGEIKSIKFSLDN-KILAVQRTSKTVDFCNFIPDNSQLEYTQECKTKNANILGFCWTS-S-TEIAFITDQG-IEFYQV  139 (657)
T ss_pred             cCCCceeEEEeccCc-ceEEEEecCceEEEEecCCCchhhHHHHHhccCcceeEEEEEec-C-eeEEEEecCC-eEEEEE
Confidence            345799999999998 88999999999999997433311  1222334456699999986 4 4455554444 666665


Q ss_pred             CCCCCCCCCCceeeeccCCCCeeEEEEecCCCcEEEEec
Q 021657          167 RNLTSNGVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSA  205 (309)
Q Consensus       167 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~  205 (309)
                      ..+     .+.++..+.++..|+--.|.++-+-++.+.+
T Consensus       140 ~pe-----krslRlVks~~~nvnWy~yc~et~v~LL~t~  173 (657)
T KOG2377|consen  140 LPE-----KRSLRLVKSHNLNVNWYMYCPETAVILLSTT  173 (657)
T ss_pred             chh-----hhhhhhhhhcccCccEEEEccccceEeeecc
Confidence            543     4556666778888888889888775443433

>COG4590 ABC-type uncharacterized transport system, permease component [General function prediction only]

Probab=95.26  E-value=0.62  Score=38.44  Aligned_cols=168  Identities=13%  Similarity=0.067  Sum_probs=94.1

Q ss_pred             cccccCCeEEEEEecCCCcEEEEEcCCCeEEEEEcCCCCcceEEEeeccCC----cee-EEEeccCCCCeEEEEcCCCcE
Q 021657           87 YNGHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPVIKVEKAHDA----DLH-CVDWNPLDDNLILTGSADNSV  161 (309)
Q Consensus        87 ~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~----~v~-~~~~~~~~~~~l~~~~~dg~i  161 (309)
                      +......|..+-..|+| +.+..-+. ..+.++++.+......+......+    .|+ ++..-. .+.-+.+++.||.|
T Consensus       216 L~~~~~~v~qllL~Pdg-~~LYv~~g-~~~~v~~L~~r~l~~rkl~~dspg~~~~~Vte~l~lL~-Gg~SLLv~~~dG~v  292 (733)
T COG4590         216 LSVPFSDVSQLLLTPDG-KTLYVRTG-SELVVALLDKRSLQIRKLVDDSPGDSRHQVTEQLYLLS-GGFSLLVVHEDGLV  292 (733)
T ss_pred             cCCCccchHhhEECCCC-CEEEEecC-CeEEEEeecccccchhhhhhcCCCchHHHHHHHHHHHh-CceeEEEEcCCCce
Confidence            44445677788889999 55544433 678888887655323322222122    222 222223 57778889999988


Q ss_pred             EEE-ecCCCCCCCCCCceeeeccCCCCeeEEEEecCCCcEEEEecCCCcEEEEeCCcccccccCCCCCcCCCCceeeeec
Q 021657          162 RMF-DRRNLTSNGVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHA  240 (309)
Q Consensus       162 ~i~-d~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~  240 (309)
                      .-| |.+.... +....++.++-...++..+.-..+ +.-+++-+.+|.+.++.-......              ++  .
T Consensus       293 sQWFdvr~~~~-p~l~h~R~f~l~pa~~~~l~pe~~-rkgF~~l~~~G~L~~f~st~~~~l--------------L~--~  354 (733)
T COG4590         293 SQWFDVRRDGQ-PHLNHIRNFKLAPAEVQFLLPETN-RKGFYSLYRNGTLQSFYSTSEKLL--------------LF--E  354 (733)
T ss_pred             eeeeeeecCCC-CcceeeeccccCcccceeeccccc-cceEEEEcCCCceeeeecccCcce--------------eh--h
Confidence            766 6665321 112333344433344443332223 335667788888887765441111              11  1


Q ss_pred             CCCcceeeEEEccCCCeEEEEecCCCCCCCCCCeEEEEEccccc
Q 021657          241 GHRDKVVDFHWNASDPWTVVSVSDDCDSTGGGGTLQIWRMSDLI  284 (309)
Q Consensus       241 ~~~~~v~~~~~~~~~~~~~~s~s~d~~s~~~dg~v~vw~~~~~~  284 (309)
                      .--+.+.-+++||.+.+++.-   |      .|.++++.+++..
T Consensus       355 ~~~~~~~~~~~Sp~~~~Ll~e---~------~gki~~~~l~Nr~  389 (733)
T COG4590         355 RAYQAPQLVAMSPNQAYLLSE---D------QGKIRLAQLENRN  389 (733)
T ss_pred             hhhcCcceeeeCcccchheee---c------CCceEEEEecCCC
Confidence            112245668899988887632   1      2789999998654

>PRK10115 protease 2; Provisional

Probab=95.17  E-value=2.3  Score=38.31  Aligned_cols=73  Identities=10%  Similarity=0.016  Sum_probs=41.3

Q ss_pred             EEEEEecCCCcEEEEEcCC-----CeEEEEEcCCCCcceEEEeeccCCcee-EEEeccCCCCeEEEEcC---CCcEEEEe
Q 021657           95 EDVTFCPSSAQEFCSVGDD-----SCLILWDARVGTSPVIKVEKAHDADLH-CVDWNPLDDNLILTGSA---DNSVRMFD  165 (309)
Q Consensus        95 ~~~~~~~~~~~~l~s~~~d-----g~i~iwd~~~~~~~~~~~~~~~~~~v~-~~~~~~~~~~~l~~~~~---dg~i~i~d  165 (309)
                      ..++|.+++..++++...+     ..|..+++.++.......+........ ....+. ++.+++..+.   ++.+.+++
T Consensus       175 ~~~~w~~D~~~~~y~~~~~~~~~~~~v~~h~lgt~~~~d~lv~~e~~~~~~~~~~~s~-d~~~l~i~~~~~~~~~~~l~~  253 (686)
T PRK10115        175 PSFVWANDSWTFYYVRKHPVTLLPYQVWRHTIGTPASQDELVYEEKDDTFYVSLHKTT-SKHYVVIHLASATTSEVLLLD  253 (686)
T ss_pred             eEEEEeeCCCEEEEEEecCCCCCCCEEEEEECCCChhHCeEEEeeCCCCEEEEEEEcC-CCCEEEEEEECCccccEEEEE
Confidence            4589999986666665432     367888888773223334433333333 223343 5665554433   35788888


Q ss_pred             cCC
Q 021657          166 RRN  168 (309)
Q Consensus       166 ~~~  168 (309)
                      ...
T Consensus       254 ~~~  256 (686)
T PRK10115        254 AEL  256 (686)
T ss_pred             CcC
Confidence            643

>PF14761 HPS3_N: Hermansky-Pudlak syndrome 3

Probab=94.98  E-value=1  Score=33.30  Aligned_cols=106  Identities=15%  Similarity=0.300  Sum_probs=66.1

Q ss_pred             cEEEEEcCCCeEEEEEcCCCCcceEEEeeccCCceeEEEeccCCCCeEEEEcCCC------cEEEE-ecCCCCCCCCCCc
Q 021657          105 QEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADN------SVRMF-DRRNLTSNGVGSP  177 (309)
Q Consensus       105 ~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg------~i~i~-d~~~~~~~~~~~~  177 (309)
                      .+|++ .....|.+|++.+...+....+.. -+.|..+.++. .|+++++--.+.      .+|+| +.+.....  ..+
T Consensus        30 ~Lfva-~~g~~Vev~~l~~~~~~~~~~F~T-v~~V~~l~y~~-~GDYlvTlE~k~~~~~~~fvR~Y~NWr~~~~~--~~~  104 (215)
T PF14761_consen   30 ALFVA-ASGCKVEVYDLEQEECPLLCTFST-VGRVLQLVYSE-AGDYLVTLEEKNKRSPVDFVRAYFNWRSQKEE--NSP  104 (215)
T ss_pred             eEEEE-cCCCEEEEEEcccCCCceeEEEcc-hhheeEEEecc-ccceEEEEEeecCCccceEEEEEEEhhhhccc--CCc
Confidence            44443 556789999998666556666654 47899999999 999999975432      45654 22221000  111


Q ss_pred             ee-eecc---------------------CCCCeeEEEEecCCCcEEEEecCCCcEEEEeCCc
Q 021657          178 IN-KFEG---------------------HSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEK  217 (309)
Q Consensus       178 ~~-~~~~---------------------~~~~v~~~~~~~~~~~l~~~~~~dg~i~iwd~~~  217 (309)
                      +. ++.+                     .+.++.+++..|-...|+ .|+ ++.+.+|.+..
T Consensus       105 v~vRiaG~~v~~~~~~~~~~qleiiElPl~~~p~ciaCC~~tG~Ll-Vg~-~~~l~lf~l~~  164 (215)
T PF14761_consen  105 VRVRIAGHRVTPSFNESSKDQLEIIELPLSEPPLCIACCPVTGNLL-VGC-GNKLVLFTLKY  164 (215)
T ss_pred             EEEEEcccccccCCCCccccceEEEEecCCCCCCEEEecCCCCCEE-EEc-CCEEEEEEEEE
Confidence            11 1111                     234667888888655555 666 57899999876

>KOG2377 consensus Uncharacterized conserved protein [Function unknown]

Probab=94.98  E-value=1.2  Score=36.98  Aligned_cols=136  Identities=10%  Similarity=0.164  Sum_probs=79.4

Q ss_pred             eEEEeccCCCCeEEEEcCCCcEEEEecCCCCCCCCCCceeeeccCCCCeeEEEEecCCCcEEEEecCCCcEEEEeCCccc
Q 021657          140 HCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVG  219 (309)
Q Consensus       140 ~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~dg~i~iwd~~~~~  219 (309)
                      +.+-|+.  .+..+.+...|.+.-|-...+..   .-++..-...+++|.++.|++|.+ ++|.--.++.|.+++.....
T Consensus        26 ngvFfDD--aNkqlfavrSggatgvvvkgpnd---DVpiSfdm~d~G~I~SIkFSlDnk-ilAVQR~~~~v~f~nf~~d~   99 (657)
T KOG2377|consen   26 NGVFFDD--ANKQLFAVRSGGATGVVVKGPND---DVPISFDMDDKGEIKSIKFSLDNK-ILAVQRTSKTVDFCNFIPDN   99 (657)
T ss_pred             cceeecc--CcceEEEEecCCeeEEEEeCCCC---CCCceeeecCCCceeEEEeccCcc-eEEEEecCceEEEEecCCCc
Confidence            3444543  33333333455566666554331   223333333567999999999999 57888889999999985422


Q ss_pred             ccccCCCCCcCCCCceeeeecCCCcceeeEEEccCCCeEEEEecCCCCCCCCCCeEEEEEccccccCChhhHhHhhhccc
Q 021657          220 KKVEQGPRTTNYPAGLFFQHAGHRDKVVDFHWNASDPWTVVSVSDDCDSTGGGGTLQIWRMSDLIYRPQDEVLAELEKFK  299 (309)
Q Consensus       220 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~s~d~~s~~~dg~v~vw~~~~~~~~~~~~~~~~~~~h~  299 (309)
                      ..+           ....+.+..+..|....|+.+...-++  ++        .-+-+|.+..     ..+.++-++.|.
T Consensus       100 ~~l-----------~~~~~ck~k~~~IlGF~W~~s~e~A~i--~~--------~G~e~y~v~p-----ekrslRlVks~~  153 (657)
T KOG2377|consen  100 SQL-----------EYTQECKTKNANILGFCWTSSTEIAFI--TD--------QGIEFYQVLP-----EKRSLRLVKSHN  153 (657)
T ss_pred             hhh-----------HHHHHhccCcceeEEEEEecCeeEEEE--ec--------CCeEEEEEch-----hhhhhhhhhhcc
Confidence            211           122233344556889999876443232  22        3577888773     455666666666


Q ss_pred             ceEEEeee
Q 021657          300 AHVISCTS  307 (309)
Q Consensus       300 ~~v~~~~~  307 (309)
                      ..|.--.|
T Consensus       154 ~nvnWy~y  161 (657)
T KOG2377|consen  154 LNVNWYMY  161 (657)
T ss_pred             cCccEEEE
Confidence            65544443

>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain

Probab=94.96  E-value=1.7  Score=35.76  Aligned_cols=101  Identities=13%  Similarity=0.149  Sum_probs=51.6

Q ss_pred             CeEEEEEecCCCcEEEEEcCCCeEEEEEcCCC-----CcceE-EEeec----cCCceeEEEeccCCCCeEEEEcCC----
Q 021657           93 TVEDVTFCPSSAQEFCSVGDDSCLILWDARVG-----TSPVI-KVEKA----HDADLHCVDWNPLDDNLILTGSAD----  158 (309)
Q Consensus        93 ~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~-----~~~~~-~~~~~----~~~~v~~~~~~~~~~~~l~~~~~d----  158 (309)
                      ....+++.+++  ++++ ......++.|....     +...+ ..+..    +......++|.| ++.+.++-+..    
T Consensus        73 ~p~Gi~~~~~G--lyV~-~~~~i~~~~d~~gdg~ad~~~~~l~~~~~~~~~~~~~~~~~l~~gp-DG~LYv~~G~~~~~~  148 (367)
T TIGR02604        73 MVTGLAVAVGG--VYVA-TPPDILFLRDKDGDDKADGEREVLLSGFGGQINNHHHSLNSLAWGP-DGWLYFNHGNTLASK  148 (367)
T ss_pred             CccceeEecCC--EEEe-CCCeEEEEeCCCCCCCCCCccEEEEEccCCCCCcccccccCceECC-CCCEEEecccCCCce
Confidence            45788888876  4443 44433334454321     21111 11221    123477899999 88766654421    


Q ss_pred             ---------------CcEEEEecCCCCCCCCCCceeeeccCCCCeeEEEEecCCCcEEEEec
Q 021657          159 ---------------NSVRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSA  205 (309)
Q Consensus       159 ---------------g~i~i~d~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~  205 (309)
                                     |.|.-+|...       ..+..+...-.....++|+++|. ++++-.
T Consensus       149 ~~~~~~~~~~~~~~~g~i~r~~pdg-------~~~e~~a~G~rnp~Gl~~d~~G~-l~~tdn  202 (367)
T TIGR02604       149 VTRPGTSDESRQGLGGGLFRYNPDG-------GKLRVVAHGFQNPYGHSVDSWGD-VFFCDN  202 (367)
T ss_pred             eccCCCccCcccccCceEEEEecCC-------CeEEEEecCcCCCccceECCCCC-EEEEcc
Confidence                           3344444443       22223322233456899999998 454433

All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.

>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs

Probab=94.88  E-value=1  Score=40.42  Aligned_cols=82  Identities=20%  Similarity=0.303  Sum_probs=51.7

Q ss_pred             CceeEEEeccCCCCeEEEEcCCCcEEEEecCCC-CCCC---CCCc---eeee--------ccCCCCeeEEEEecCC---C
Q 021657          137 ADLHCVDWNPLDDNLILTGSADNSVRMFDRRNL-TSNG---VGSP---INKF--------EGHSAAVLCVQWSPDK---S  198 (309)
Q Consensus       137 ~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~-~~~~---~~~~---~~~~--------~~~~~~v~~~~~~~~~---~  198 (309)
                      ..|..+.++| +|.+++..+..| |.|..+... ...+   .++.   .+++        ......|..+.|+|.+   .
T Consensus        85 f~v~~i~~n~-~g~~lal~G~~~-v~V~~LP~r~g~~~~~~~g~~~i~Crt~~v~~~~~~~~~~~~i~qv~WhP~s~~~~  162 (717)
T PF10168_consen   85 FEVHQISLNP-TGSLLALVGPRG-VVVLELPRRWGKNGEFEDGKKEINCRTVPVDERFFTSNSSLEIKQVRWHPWSESDS  162 (717)
T ss_pred             eeEEEEEECC-CCCEEEEEcCCc-EEEEEeccccCccccccCCCcceeEEEEEechhhccCCCCceEEEEEEcCCCCCCC
Confidence            4688999999 999999888766 444444321 0000   0111   1111        1234578899999974   6


Q ss_pred             cEEEEecCCCcEEEEeCCccccc
Q 021657          199 SVFGSSAEDGLLNIWDYEKVGKK  221 (309)
Q Consensus       199 ~l~~~~~~dg~i~iwd~~~~~~~  221 (309)
                      +| +.-+.|+.+++||+.....+
T Consensus       163 ~l-~vLtsdn~lR~y~~~~~~~p  184 (717)
T PF10168_consen  163 HL-VVLTSDNTLRLYDISDPQHP  184 (717)
T ss_pred             eE-EEEecCCEEEEEecCCCCCC
Confidence            65 46677999999999764443

It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].

>PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus

Probab=94.82  E-value=0.58  Score=38.80  Aligned_cols=88  Identities=14%  Similarity=0.197  Sum_probs=56.1

Q ss_pred             cccccCCeEEEEEecCCCcEEEEEcCCCeEEEEEcCCCCcceEEEeeccCCc-eeEEEeccCC----------------C
Q 021657           87 YNGHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPVIKVEKAHDAD-LHCVDWNPLD----------------D  149 (309)
Q Consensus        87 ~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~-v~~~~~~~~~----------------~  149 (309)
                      +......+.+++.+|.+ .+.++...=|.|.++|+..+.  .++..++-.+. +.-+......                .
T Consensus       303 l~D~~R~~~~i~~sP~~-~laA~tDslGRV~LiD~~~~~--vvrmWKGYRdAqc~wi~~~~~~~~~~~~~~~~~~~~~~~  379 (415)
T PF14655_consen  303 LPDSKREGESICLSPSG-RLAAVTDSLGRVLLIDVARGI--VVRMWKGYRDAQCGWIEVPEEGDRDRSNSNSPKSSSRFA  379 (415)
T ss_pred             eccCCceEEEEEECCCC-CEEEEEcCCCcEEEEECCCCh--hhhhhccCccceEEEEEeecccccccccccccCCCCcce
Confidence            44455678999999997 888888888999999998776  44444443332 1111110000                1


Q ss_pred             C-eEEEEcCCCcEEEEecCCCCCCCCCCceeeecc
Q 021657          150 N-LILTGSADNSVRMFDRRNLTSNGVGSPINKFEG  183 (309)
Q Consensus       150 ~-~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~  183 (309)
                      . +++-+-.-|.|.||++++      +..+..+..
T Consensus       380 l~LvIyaprRg~lEvW~~~~------g~Rv~a~~v  408 (415)
T PF14655_consen  380 LFLVIYAPRRGILEVWSMRQ------GPRVAAFNV  408 (415)
T ss_pred             EEEEEEeccCCeEEEEecCC------CCEEEEEEe
Confidence            1 223345678999999998      777766654

>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin

Probab=94.80  E-value=0.3  Score=36.73  Aligned_cols=82  Identities=5%  Similarity=0.120  Sum_probs=50.7

Q ss_pred             EECCCCCEEEEecCCCcEEEEeCCccccccccCCccccccCCCCceeecCCCCCCCCcccCCCCCcCcccccccccCCeE
Q 021657           16 AMCPTEPYVLSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVE   95 (309)
Q Consensus        16 ~~~~~~~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~   95 (309)
                      .+..++.+|++-+.+|.+++||+.+................                      ..  ...  ......|.
T Consensus        17 ~l~~~~~~Ll~iT~~G~l~vWnl~~~k~~~~~~Si~pll~~----------------------~~--~~~--~~~~~~i~   70 (219)
T PF07569_consen   17 FLECNGSYLLAITSSGLLYVWNLKKGKAVLPPVSIAPLLNS----------------------SP--VSD--KSSSPNIT   70 (219)
T ss_pred             EEEeCCCEEEEEeCCCeEEEEECCCCeeccCCccHHHHhcc----------------------cc--ccc--CCCCCcEE
Confidence            35567899999999999999999976443333110000000                      00  000  03556788


Q ss_pred             EEEEecCCCcEEEEEcCCCeEEEEEcCCCC
Q 021657           96 DVTFCPSSAQEFCSVGDDSCLILWDARVGT  125 (309)
Q Consensus        96 ~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~  125 (309)
                      .+..+.+| .-+++-+ +|..+.|+..-+.
T Consensus        71 ~~~lt~~G-~PiV~ls-ng~~y~y~~~L~~   98 (219)
T PF07569_consen   71 SCSLTSNG-VPIVTLS-NGDSYSYSPDLGC   98 (219)
T ss_pred             EEEEcCCC-CEEEEEe-CCCEEEeccccce
Confidence            88898887 5555544 5788999876554

These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus

>PF15390 DUF4613: Domain of unknown function (DUF4613)

Probab=94.79  E-value=2.4  Score=36.48  Aligned_cols=71  Identities=13%  Similarity=0.237  Sum_probs=46.1

Q ss_pred             EEEEEecCCCcEEEEEcCCCeEEEEEcCCCCcceEEEeeccCCceeEEEeccCCCCeEEEEcC-CCcEEEEecCC
Q 021657           95 EDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSA-DNSVRMFDRRN  168 (309)
Q Consensus        95 ~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~-dg~i~i~d~~~  168 (309)
                      ..+.|+|.. .+|+.-.....=.+++++.........+ ...+-|.|.+|.+ +|+.|+++-. .=.-++||-..
T Consensus       116 QGCVWHPk~-~iL~VLT~~dvSV~~sV~~d~srVkaDi-~~~G~IhCACWT~-DG~RLVVAvGSsLHSyiWd~~q  187 (671)
T PF15390_consen  116 QGCVWHPKK-AILTVLTARDVSVLPSVHCDSSRVKADI-KTSGLIHCACWTK-DGQRLVVAVGSSLHSYIWDSAQ  187 (671)
T ss_pred             CcccccCCC-ceEEEEecCceeEeeeeeeCCceEEEec-cCCceEEEEEecC-cCCEEEEEeCCeEEEEEecCch
Confidence            456799987 5565554444445667766554343334 4567899999999 8887766533 33567888654

>KOG4460 consensus Nuclear pore complex, Nup88/rNup84 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=94.57  E-value=0.69  Score=38.92  Aligned_cols=83  Identities=12%  Similarity=0.136  Sum_probs=50.3

Q ss_pred             ceeEEEeccCCCCeEEEEcCCCcEEEEecCCCCCC---CCCCceeeec-----------cCCCCeeEEEEecCC---CcE
Q 021657          138 DLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSN---GVGSPINKFE-----------GHSAAVLCVQWSPDK---SSV  200 (309)
Q Consensus       138 ~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~---~~~~~~~~~~-----------~~~~~v~~~~~~~~~---~~l  200 (309)
                      .|..+..++ .|..++..+.+|.+.++=.+.-...   ..+++.....           ...-.+..++|+|+.   .+|
T Consensus       105 eV~~vl~s~-~GS~VaL~G~~Gi~vMeLp~rwG~~s~~eDgk~~v~CRt~~i~~~~ftss~~ltl~Qa~WHP~S~~D~hL  183 (741)
T KOG4460|consen  105 EVYQVLLSP-TGSHVALIGIKGLMVMELPKRWGKNSEFEDGKSTVNCRTTPVAERFFTSSTSLTLKQAAWHPSSILDPHL  183 (741)
T ss_pred             EEEEEEecC-CCceEEEecCCeeEEEEchhhcCccceecCCCceEEEEeecccceeeccCCceeeeeccccCCccCCceE
Confidence            567788899 8998888888986655432210000   0022221111           112346678999986   444


Q ss_pred             EEEecCCCcEEEEeCCcccccc
Q 021657          201 FGSSAEDGLLNIWDYEKVGKKV  222 (309)
Q Consensus       201 ~~~~~~dg~i~iwd~~~~~~~~  222 (309)
                       ..-+.|+.|++||+.......
T Consensus       184 -~iL~sdnviRiy~lS~~tely  204 (741)
T KOG4460|consen  184 -VLLTSDNVIRIYSLSEPTELY  204 (741)
T ss_pred             -EEEecCcEEEEEecCCcchhh
Confidence             466679999999998855543

>PF07676 PD40: WD40-like Beta Propeller Repeat; InterPro: IPR011659 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide

Probab=94.39  E-value=0.26  Score=25.17  Aligned_cols=30  Identities=23%  Similarity=0.476  Sum_probs=22.6

Q ss_pred             CCCCeeEEEEecCCCcEEEEecCC--CcEEEE
Q 021657          184 HSAAVLCVQWSPDKSSVFGSSAED--GLLNIW  213 (309)
Q Consensus       184 ~~~~v~~~~~~~~~~~l~~~~~~d--g~i~iw  213 (309)
                      ....-....|+|||++++.++..+  |...||
T Consensus         7 ~~~~~~~p~~SpDGk~i~f~s~~~~~g~~diy   38 (39)
T PF07676_consen    7 SPGDDGSPAWSPDGKYIYFTSNRNDRGSFDIY   38 (39)
T ss_dssp             SSSSEEEEEE-TTSSEEEEEEECT--SSEEEE
T ss_pred             CCccccCEEEecCCCEEEEEecCCCCCCcCEE
Confidence            345667889999999988788777  777766

WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events. This region appears to be related to the IPR001680 from INTERPRO repeat. This model is likely to miss copies within a sequence.; PDB: 2HQS_D 1C5K_A 2IVZ_A 2W8B_D 3IAX_A 1CRZ_A 1N6F_D 1N6D_C 1N6E_C 1K32_A ....

>KOG2247 consensus WD40 repeat-containing protein [General function prediction only]

Probab=94.38  E-value=0.011  Score=48.45  Aligned_cols=134  Identities=14%  Similarity=0.304  Sum_probs=89.8

Q ss_pred             CceeEEEeccCCCCeEEEEcCCCcEEEEecCCCCCCCCCCceeeeccCCCCeeEEEEecCCCcEEEEecCCCcEEEEeCC
Q 021657          137 ADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYE  216 (309)
Q Consensus       137 ~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~dg~i~iwd~~  216 (309)
                      .......|.| ++.-++.++.+..+..||-.       ++.+.... ..+....++|..++..+++.+-..+.+.+||+.
T Consensus        35 v~pi~~~w~~-e~~nlavaca~tiv~~YD~a-------gq~~le~n-~tg~aldm~wDkegdvlavlAek~~piylwd~n  105 (615)
T KOG2247|consen   35 VGPIIHRWRP-EGHNLAVACANTIVIYYDKA-------GQVILELN-PTGKALDMAWDKEGDVLAVLAEKTGPIYLWDVN  105 (615)
T ss_pred             cccceeeEec-CCCceehhhhhhHHHhhhhh-------cceecccC-CchhHhhhhhccccchhhhhhhcCCCeeechhh
Confidence            3444667888 56568888888899999865       34444443 234556789999998877788889999999998


Q ss_pred             cccccccCCCCCcCCCCceeeeecC-CCcceeeEEEccCCCeEEEEecCCCCCCCCCCeEEEEEccccccCChhhHhHhh
Q 021657          217 KVGKKVEQGPRTTNYPAGLFFQHAG-HRDKVVDFHWNASDPWTVVSVSDDCDSTGGGGTLQIWRMSDLIYRPQDEVLAEL  295 (309)
Q Consensus       217 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~~s~s~d~~s~~~dg~v~vw~~~~~~~~~~~~~~~~~  295 (309)
                      +.....-              .+.+ |....  +.|++..+.++        .|-..|.+.|++-.      ..+.+..+
T Consensus       106 ~eytqqL--------------E~gg~~s~sl--l~wsKg~~el~--------ig~~~gn~viynhg------tsR~iiv~  155 (615)
T KOG2247|consen  106 SEYTQQL--------------ESGGTSSKSL--LAWSKGTPELV--------IGNNAGNIVIYNHG------TSRRIIVM  155 (615)
T ss_pred             hhhHHHH--------------hccCcchHHH--HhhccCCcccc--------ccccccceEEEecc------chhhhhhh
Confidence            7221110              1111 22222  67888666655        44455899999988      56666666


Q ss_pred             hcccceEEEeeeCC
Q 021657          296 EKFKAHVISCTSKP  309 (309)
Q Consensus       296 ~~h~~~v~~~~~~P  309 (309)
                      -.|..+++++++.|
T Consensus       156 Gkh~RRgtq~av~l  169 (615)
T KOG2247|consen  156 GKHQRRGTQIAVTL  169 (615)
T ss_pred             cccccceeEEEecc
Confidence            55888888888754

>PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes []

Probab=94.28  E-value=1.1  Score=39.86  Aligned_cols=125  Identities=10%  Similarity=0.062  Sum_probs=74.5

Q ss_pred             CCCEEEEecCCCcEEEEeCCccccccccCCccccccCCCCceeecCCCCCCCCcccCCCCCcCcccccccccCCeEEEEE
Q 021657           20 TEPYVLSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTF   99 (309)
Q Consensus        20 ~~~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~   99 (309)
                      ....|+.|..||.|.+|.++.-..............                    ......++...+. -...++++++
T Consensus       113 ~~EVLl~c~DdG~V~~Yyt~~I~~~i~~~~~~~~~~--------------------~~r~~i~P~f~~~-v~~SaWGLdI  171 (717)
T PF08728_consen  113 GEEVLLLCTDDGDVLAYYTETIIEAIERFSEDNDSG--------------------FSRLKIKPFFHLR-VGASAWGLDI  171 (717)
T ss_pred             CeeEEEEEecCCeEEEEEHHHHHHHHHhhccccccc--------------------cccccCCCCeEee-cCCceeEEEE
Confidence            456799999999999998865321111100000000                    0001112222222 3347899999


Q ss_pred             e--cCCCcEEEEEcCCCeEEEEEcCCCCcce-EEEeeccCCceeEEEeccCC----CC-eEEEEcCCCcEEEEec
Q 021657          100 C--PSSAQEFCSVGDDSCLILWDARVGTSPV-IKVEKAHDADLHCVDWNPLD----DN-LILTGSADNSVRMFDR  166 (309)
Q Consensus       100 ~--~~~~~~l~s~~~dg~i~iwd~~~~~~~~-~~~~~~~~~~v~~~~~~~~~----~~-~l~~~~~dg~i~i~d~  166 (309)
                      +  ... +++|++++...|.||-........ ......+...|.+++|-+.+    |. .+++++-.|.+.+|++
T Consensus       172 h~~~~~-rlIAVSsNs~~VTVFaf~l~~~r~~~~~s~~~~hNIP~VSFl~~~~d~~G~v~v~a~dI~G~v~~~~I  245 (717)
T PF08728_consen  172 HDYKKS-RLIAVSSNSQEVTVFAFALVDERFYHVPSHQHSHNIPNVSFLDDDLDPNGHVKVVATDISGEVWTFKI  245 (717)
T ss_pred             EecCcc-eEEEEecCCceEEEEEEeccccccccccccccccCCCeeEeecCCCCCccceEEEEEeccCcEEEEEE
Confidence            8  555 788888888888888665422111 11122366789999997632    22 7888899999999888

RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance [].

>PHA02790 Kelch-like protein; Provisional

Probab=94.25  E-value=3  Score=35.88  Aligned_cols=102  Identities=5%  Similarity=-0.053  Sum_probs=51.2

Q ss_pred             CCCcEEEEEcCC--CeEEEEEcCCCCcceEEEeeccCCceeEEEeccCCCCeEEEEcCCC---cEEEEecCCCCCCCCCC
Q 021657          102 SSAQEFCSVGDD--SCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADN---SVRMFDRRNLTSNGVGS  176 (309)
Q Consensus       102 ~~~~~l~s~~~d--g~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg---~i~i~d~~~~~~~~~~~  176 (309)
                      ++ .+.+.|+.+  ..+..||..++++.....+.........+..   ++...+.|+.++   .+..||.++..    ..
T Consensus       318 ~~-~iYviGG~~~~~sve~ydp~~n~W~~~~~l~~~r~~~~~~~~---~g~IYviGG~~~~~~~ve~ydp~~~~----W~  389 (480)
T PHA02790        318 NN-KLYVVGGLPNPTSVERWFHGDAAWVNMPSLLKPRCNPAVASI---NNVIYVIGGHSETDTTTEYLLPNHDQ----WQ  389 (480)
T ss_pred             CC-EEEEECCcCCCCceEEEECCCCeEEECCCCCCCCcccEEEEE---CCEEEEecCcCCCCccEEEEeCCCCE----EE
Confidence            44 777777754  3577888766653222222211111122222   678888887654   46678877532    22


Q ss_pred             ceeeeccCCCCeeEEEEecCCCcEEEEecCCCcEEEEeCCc
Q 021657          177 PINKFEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEK  217 (309)
Q Consensus       177 ~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~dg~i~iwd~~~  217 (309)
                      .+..+....... +++ .-++. +++.|+   .+.+||.++
T Consensus       390 ~~~~m~~~r~~~-~~~-~~~~~-IYv~GG---~~e~ydp~~  424 (480)
T PHA02790        390 FGPSTYYPHYKS-CAL-VFGRR-LFLVGR---NAEFYCESS  424 (480)
T ss_pred             eCCCCCCccccc-eEE-EECCE-EEEECC---ceEEecCCC
Confidence            222222111111 222 23344 676764   567888765

>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin

Probab=94.24  E-value=0.57  Score=35.29  Aligned_cols=68  Identities=6%  Similarity=0.069  Sum_probs=45.6

Q ss_pred             CCCeEEEEcCCCcEEEEecCCCCCCCCCCceee-ec-------cCCCCeeEEEEecCCCcEEEEecCCCcEEEEeCCc
Q 021657          148 DDNLILTGSADNSVRMFDRRNLTSNGVGSPINK-FE-------GHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEK  217 (309)
Q Consensus       148 ~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~-~~-------~~~~~v~~~~~~~~~~~l~~~~~~dg~i~iwd~~~  217 (309)
                      .++++++-+.+|.+++||+.+....-....+.. +.       .....|..+.++.+|.- +++- .+|..+.|+...
T Consensus        21 ~~~~Ll~iT~~G~l~vWnl~~~k~~~~~~Si~pll~~~~~~~~~~~~~i~~~~lt~~G~P-iV~l-sng~~y~y~~~L   96 (219)
T PF07569_consen   21 NGSYLLAITSSGLLYVWNLKKGKAVLPPVSIAPLLNSSPVSDKSSSPNITSCSLTSNGVP-IVTL-SNGDSYSYSPDL   96 (219)
T ss_pred             CCCEEEEEeCCCeEEEEECCCCeeccCCccHHHHhcccccccCCCCCcEEEEEEcCCCCE-EEEE-eCCCEEEecccc
Confidence            678899999999999999998432111101111 11       24567888999988874 4344 468889998765

These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus

>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases

Probab=94.10  E-value=2.6  Score=34.14  Aligned_cols=51  Identities=12%  Similarity=0.241  Sum_probs=32.7

Q ss_pred             CeEEEEEecCCCcEEEEEcCCCeEEEEEcCCCCc-ceEEEe----eccCCceeEEEecc
Q 021657           93 TVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTS-PVIKVE----KAHDADLHCVDWNP  146 (309)
Q Consensus        93 ~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~-~~~~~~----~~~~~~v~~~~~~~  146 (309)
                      ..+.|+|.|++ .+|++ ...|.|++++ ..+.. ..+...    .........++++|
T Consensus         3 ~P~~~a~~pdG-~l~v~-e~~G~i~~~~-~~g~~~~~v~~~~~v~~~~~~gllgia~~p   58 (331)
T PF07995_consen    3 NPRSMAFLPDG-RLLVA-ERSGRIWVVD-KDGSLKTPVADLPEVFADGERGLLGIAFHP   58 (331)
T ss_dssp             SEEEEEEETTS-CEEEE-ETTTEEEEEE-TTTEECEEEEE-TTTBTSTTBSEEEEEE-T
T ss_pred             CceEEEEeCCC-cEEEE-eCCceEEEEe-CCCcCcceecccccccccccCCcccceecc
Confidence            35789999998 66665 5699999999 33332 112221    23345678999998

The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....

>PF07676 PD40: WD40-like Beta Propeller Repeat; InterPro: IPR011659 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide

Probab=93.88  E-value=0.29  Score=24.96  Aligned_cols=33  Identities=18%  Similarity=0.322  Sum_probs=20.9

Q ss_pred             ccCCCCCcceEEEEECCCCCEEE-EecCC--CcEEEE
Q 021657            3 ILTGHQDNAEFALAMCPTEPYVL-SGGKD--KSVVLW   36 (309)
Q Consensus         3 ~l~~H~~~~V~~~~~~~~~~~l~-t~~~d--g~i~vw   36 (309)
                      .+.-..+ .-....|+|||+.|+ ++..+  |.-.||
T Consensus         3 ~~t~~~~-~~~~p~~SpDGk~i~f~s~~~~~g~~diy   38 (39)
T PF07676_consen    3 QLTNSPG-DDGSPAWSPDGKYIYFTSNRNDRGSFDIY   38 (39)
T ss_dssp             EES-SSS-SEEEEEE-TTSSEEEEEEECT--SSEEEE
T ss_pred             CcccCCc-cccCEEEecCCCEEEEEecCCCCCCcCEE
Confidence            3444444 557899999999877 45555  666666

WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events. This region appears to be related to the IPR001680 from INTERPRO repeat. This model is likely to miss copies within a sequence.; PDB: 2HQS_D 1C5K_A 2IVZ_A 2W8B_D 3IAX_A 1CRZ_A 1N6F_D 1N6D_C 1N6E_C 1K32_A ....

>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A

Probab=93.63  E-value=3.3  Score=33.90  Aligned_cols=154  Identities=16%  Similarity=0.147  Sum_probs=74.0

Q ss_pred             EEecCCCcEEEEEcCCCe--EEEEEcCCCCcceEEEeeccCCceeEEEeccCCCCeEEEEcCCCcEEEEecCCCCCCCCC
Q 021657           98 TFCPSSAQEFCSVGDDSC--LILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVG  175 (309)
Q Consensus        98 ~~~~~~~~~l~s~~~dg~--i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~  175 (309)
                      +|.++|.++|+.+..||.  +.+.|+.+++  ..+.-.+.........++| ..+.++-.-....++-.|+++      .
T Consensus        42 ~ft~dG~kllF~s~~dg~~nly~lDL~t~~--i~QLTdg~g~~~~g~~~s~-~~~~~~Yv~~~~~l~~vdL~T------~  112 (386)
T PF14583_consen   42 CFTDDGRKLLFASDFDGNRNLYLLDLATGE--ITQLTDGPGDNTFGGFLSP-DDRALYYVKNGRSLRRVDLDT------L  112 (386)
T ss_dssp             -B-TTS-EEEEEE-TTSS-EEEEEETTT-E--EEE---SS-B-TTT-EE-T-TSSEEEEEETTTEEEEEETTT-------
T ss_pred             CcCCCCCEEEEEeccCCCcceEEEEcccCE--EEECccCCCCCccceEEec-CCCeEEEEECCCeEEEEECCc------C
Confidence            677888777777776664  5566777776  3333222222333566778 566654444456888899998      5


Q ss_pred             CceeeeccCCCCeeEEEEe--cCCCcEEEEecC----C-------------------CcEEEEeCCcccccccCCCCCcC
Q 021657          176 SPINKFEGHSAAVLCVQWS--PDKSSVFGSSAE----D-------------------GLLNIWDYEKVGKKVEQGPRTTN  230 (309)
Q Consensus       176 ~~~~~~~~~~~~v~~~~~~--~~~~~l~~~~~~----d-------------------g~i~iwd~~~~~~~~~~~~~~~~  230 (309)
                      +....+......+-...|.  .++.. + ++..    |                   ..|.--|+++             
T Consensus       113 e~~~vy~~p~~~~g~gt~v~n~d~t~-~-~g~e~~~~d~~~l~~~~~f~e~~~a~p~~~i~~idl~t-------------  177 (386)
T PF14583_consen  113 EERVVYEVPDDWKGYGTWVANSDCTK-L-VGIEISREDWKPLTKWKGFREFYEARPHCRIFTIDLKT-------------  177 (386)
T ss_dssp             -EEEEEE--TTEEEEEEEEE-TTSSE-E-EEEEEEGGG-----SHHHHHHHHHC---EEEEEEETTT-------------
T ss_pred             cEEEEEECCcccccccceeeCCCccE-E-EEEEEeehhccCccccHHHHHHHhhCCCceEEEEECCC-------------
Confidence            5444455455555445554  34543 3 2321    0                   0111111111             


Q ss_pred             CCCceeeeecCCCcceeeEEEccCCCeEEEEecCCCCCCCCCCe-EEEEEccc
Q 021657          231 YPAGLFFQHAGHRDKVVDFHWNASDPWTVVSVSDDCDSTGGGGT-LQIWRMSD  282 (309)
Q Consensus       231 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~s~d~~s~~~dg~-v~vw~~~~  282 (309)
                         .....+......+.-+.|+|.++.+++-|-+    |-.|.. -+||=++.
T Consensus       178 ---G~~~~v~~~~~wlgH~~fsP~dp~li~fCHE----Gpw~~Vd~RiW~i~~  223 (386)
T PF14583_consen  178 ---GERKVVFEDTDWLGHVQFSPTDPTLIMFCHE----GPWDLVDQRIWTINT  223 (386)
T ss_dssp             -----EEEEEEESS-EEEEEEETTEEEEEEEEE-----S-TTTSS-SEEEEET
T ss_pred             ---CceeEEEecCccccCcccCCCCCCEEEEecc----CCcceeceEEEEEEc
Confidence               1112222334567888999999988877653    344443 36777763

>KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair]

Probab=93.63  E-value=5.8  Score=36.48  Aligned_cols=154  Identities=8%  Similarity=0.088  Sum_probs=98.0

Q ss_pred             eEEEEEecCCCcEEEEEcC----------CCeEEEEEcCCCCcceEEEee--ccCCceeEEEeccCCCCeEEEEcCCCcE
Q 021657           94 VEDVTFCPSSAQEFCSVGD----------DSCLILWDARVGTSPVIKVEK--AHDADLHCVDWNPLDDNLILTGSADNSV  161 (309)
Q Consensus        94 v~~~~~~~~~~~~l~s~~~----------dg~i~iwd~~~~~~~~~~~~~--~~~~~v~~~~~~~~~~~~l~~~~~dg~i  161 (309)
                      |.++.|..+.+.+++.|..          .|.|.++.......  .....  .-++.+.++..-  +++++|.  -...|
T Consensus       777 i~s~~~~~d~~t~~vVGT~~v~Pde~ep~~GRIivfe~~e~~~--L~~v~e~~v~Gav~aL~~f--ngkllA~--In~~v  850 (1096)
T KOG1897|consen  777 IISCKFTDDPNTYYVVGTGLVYPDENEPVNGRIIVFEFEELNS--LELVAETVVKGAVYALVEF--NGKLLAG--INQSV  850 (1096)
T ss_pred             eeeeeecCCCceEEEEEEEeeccCCCCcccceEEEEEEecCCc--eeeeeeeeeccceeehhhh--CCeEEEe--cCcEE
Confidence            4455577764467777652          58888888877331  22222  223455555432  5666654  45689


Q ss_pred             EEEecCCCCCCCCCCceeeeccCCCCeeEEEEecCCCcEEEEecCCCcEEEEeCCcccccccCCCCCcCCCCceeeeecC
Q 021657          162 RMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAG  241 (309)
Q Consensus       162 ~i~d~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~  241 (309)
                      ++|+..+      .+.++.-..+..++..+...-.|.. ++.|.-=+.+.+-..+......            ......-
T Consensus       851 rLye~t~------~~eLr~e~~~~~~~~aL~l~v~gde-I~VgDlm~Sitll~y~~~eg~f------------~evArD~  911 (1096)
T KOG1897|consen  851 RLYEWTT------ERELRIECNISNPIIALDLQVKGDE-IAVGDLMRSITLLQYKGDEGNF------------EEVARDY  911 (1096)
T ss_pred             EEEEccc------cceehhhhcccCCeEEEEEEecCcE-EEEeeccceEEEEEEeccCCce------------EEeehhh
Confidence            9999988      6667766777888999999988886 5688877888777666522111            1223345


Q ss_pred             CCcceeeEEEccCCCeEEEEecCCCCCCCCCCeEEEEEcc
Q 021657          242 HRDKVVDFHWNASDPWTVVSVSDDCDSTGGGGTLQIWRMS  281 (309)
Q Consensus       242 ~~~~v~~~~~~~~~~~~~~s~s~d~~s~~~dg~v~vw~~~  281 (309)
                      +..+++++.+-.++.++.+.         .+|.+++-..+
T Consensus       912 ~p~Wmtaveil~~d~ylgae---------~~gNlf~v~~d  942 (1096)
T KOG1897|consen  912 NPNWMTAVEILDDDTYLGAE---------NSGNLFTVRKD  942 (1096)
T ss_pred             CccceeeEEEecCceEEeec---------ccccEEEEEec
Confidence            67788888887765544432         33666666655

>PRK10115 protease 2; Provisional

Probab=93.59  E-value=5.2  Score=36.20  Aligned_cols=117  Identities=10%  Similarity=0.170  Sum_probs=66.5

Q ss_pred             ceeEEEeccCCCCeEEEEcCC-C----cEEEEecCCCCCCCCCCceee-eccCCCCeeEEEEecCCCcEEEEecCC----
Q 021657          138 DLHCVDWNPLDDNLILTGSAD-N----SVRMFDRRNLTSNGVGSPINK-FEGHSAAVLCVQWSPDKSSVFGSSAED----  207 (309)
Q Consensus       138 ~v~~~~~~~~~~~~l~~~~~d-g----~i~i~d~~~~~~~~~~~~~~~-~~~~~~~v~~~~~~~~~~~l~~~~~~d----  207 (309)
                      .+..+.|+| ++++|+.+... |    .|++.|+.+      +..+.. +..-  . ..++|.+|++.++.+...+    
T Consensus       128 ~l~~~~~Sp-dg~~la~~~d~~G~E~~~l~v~d~~t------g~~l~~~i~~~--~-~~~~w~~D~~~~~y~~~~~~~~~  197 (686)
T PRK10115        128 TLGGMAITP-DNTIMALAEDFLSRRQYGIRFRNLET------GNWYPELLDNV--E-PSFVWANDSWTFYYVRKHPVTLL  197 (686)
T ss_pred             EEeEEEECC-CCCEEEEEecCCCcEEEEEEEEECCC------CCCCCccccCc--c-eEEEEeeCCCEEEEEEecCCCCC
Confidence            467788999 88877766432 2    588888876      543322 2211  1 4599999998777665432    


Q ss_pred             -CcEEEEeCCcccccccCCCCCcCCCCceeeeecCCCcceeeEEEccCCCeEEEEecCCCCCCCCCCeEEEEEcc
Q 021657          208 -GLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKVVDFHWNASDPWTVVSVSDDCDSTGGGGTLQIWRMS  281 (309)
Q Consensus       208 -g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~s~d~~s~~~dg~v~vw~~~  281 (309)
                       ..|+.+++.+....           ..+++.-...... ..+..+.++.++++..+     .+.++.+.+++..
T Consensus       198 ~~~v~~h~lgt~~~~-----------d~lv~~e~~~~~~-~~~~~s~d~~~l~i~~~-----~~~~~~~~l~~~~  255 (686)
T PRK10115        198 PYQVWRHTIGTPASQ-----------DELVYEEKDDTFY-VSLHKTTSKHYVVIHLA-----SATTSEVLLLDAE  255 (686)
T ss_pred             CCEEEEEECCCChhH-----------CeEEEeeCCCCEE-EEEEEcCCCCEEEEEEE-----CCccccEEEEECc
Confidence             35667777662111           1233332211111 23334446777765443     3355788888854

>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs

Probab=93.51  E-value=5.5  Score=36.03  Aligned_cols=89  Identities=22%  Similarity=0.310  Sum_probs=49.9

Q ss_pred             CCCeeEEEEecCCCcEEEEecCCCcEEEEeCCc-ccccc--cCCCCCcC---CCCceeeeecCCCcceeeEEEccC---C
Q 021657          185 SAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEK-VGKKV--EQGPRTTN---YPAGLFFQHAGHRDKVVDFHWNAS---D  255 (309)
Q Consensus       185 ~~~v~~~~~~~~~~~l~~~~~~dg~i~iwd~~~-~~~~~--~~~~~~~~---~~~~~~~~~~~~~~~v~~~~~~~~---~  255 (309)
                      .-.|..|.++|+|..+ |..|.. .|.|-.+.. .++.-  ........   .+....+-...+...|..+.|+|.   +
T Consensus        84 ~f~v~~i~~n~~g~~l-al~G~~-~v~V~~LP~r~g~~~~~~~g~~~i~Crt~~v~~~~~~~~~~~~i~qv~WhP~s~~~  161 (717)
T PF10168_consen   84 LFEVHQISLNPTGSLL-ALVGPR-GVVVLELPRRWGKNGEFEDGKKEINCRTVPVDERFFTSNSSLEIKQVRWHPWSESD  161 (717)
T ss_pred             ceeEEEEEECCCCCEE-EEEcCC-cEEEEEeccccCccccccCCCcceeEEEEEechhhccCCCCceEEEEEEcCCCCCC
Confidence            3468899999999964 455544 455555543 22211  10000000   000001111234568999999997   4


Q ss_pred             CeEEEEecCCCCCCCCCCeEEEEEcccc
Q 021657          256 PWTVVSVSDDCDSTGGGGTLQIWRMSDL  283 (309)
Q Consensus       256 ~~~~~s~s~d~~s~~~dg~v~vw~~~~~  283 (309)
                      ..|++-.|+        +++++||+.+.
T Consensus       162 ~~l~vLtsd--------n~lR~y~~~~~  181 (717)
T PF10168_consen  162 SHLVVLTSD--------NTLRLYDISDP  181 (717)
T ss_pred             CeEEEEecC--------CEEEEEecCCC
Confidence            666654444        79999999853

It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].

>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family

Probab=93.28  E-value=5.2  Score=34.88  Aligned_cols=51  Identities=18%  Similarity=0.238  Sum_probs=31.2

Q ss_pred             eEEEEEcCCCCcceEEEeeccCCce---------eEEEeccCCCC---eEEEEcCCCcEEEEecCC
Q 021657          115 CLILWDARVGTSPVIKVEKAHDADL---------HCVDWNPLDDN---LILTGSADNSVRMFDRRN  168 (309)
Q Consensus       115 ~i~iwd~~~~~~~~~~~~~~~~~~v---------~~~~~~~~~~~---~l~~~~~dg~i~i~d~~~  168 (309)
                      .|.-.|+++++  ..-.++.....+         .-+.+.. +++   .++.+..+|.++++|.++
T Consensus       272 s~vAld~~TG~--~~W~~Q~~~~D~wD~d~~~~p~l~d~~~-~G~~~~~v~~~~K~G~~~vlDr~t  334 (527)
T TIGR03075       272 SIVARDPDTGK--IKWHYQTTPHDEWDYDGVNEMILFDLKK-DGKPRKLLAHADRNGFFYVLDRTN  334 (527)
T ss_pred             eEEEEccccCC--EEEeeeCCCCCCccccCCCCcEEEEecc-CCcEEEEEEEeCCCceEEEEECCC
Confidence            56666888887  333333211111         1222223 554   788999999999999998

This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.

>PF12657 TFIIIC_delta: Transcription factor IIIC subunit delta N-term; InterPro: IPR024761 This entry represents a domain found towards the N terminus of the 90 kDa subunit of transcription factor IIIC (also known as subunit 9 in yeast [])

Probab=93.11  E-value=1.3  Score=32.01  Aligned_cols=32  Identities=19%  Similarity=0.472  Sum_probs=27.1

Q ss_pred             CCeeEEEEecC-----CCcEEEEecCCCcEEEEeCCc
Q 021657          186 AAVLCVQWSPD-----KSSVFGSSAEDGLLNIWDYEK  217 (309)
Q Consensus       186 ~~v~~~~~~~~-----~~~l~~~~~~dg~i~iwd~~~  217 (309)
                      ..+.+++|||.     ++.+||+.+.++.|.||.-..
T Consensus        86 ~~vv~~aWSP~Gl~~~~rClLavLTs~~~l~l~~~~~  122 (173)
T PF12657_consen   86 SQVVSAAWSPSGLGPNGRCLLAVLTSNGRLSLYGPPG  122 (173)
T ss_pred             ccEEEEEECCCCCCCCCceEEEEEcCCCeEEEEecCC
Confidence            37889999984     467899999999999998765

The whole subunit is involved in RNA polymerase III-mediated transcription. It is possible that this N-terminal domain interacts with TFIIIC subunit 8 [].

>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family

Probab=93.02  E-value=5.7  Score=34.64  Aligned_cols=53  Identities=11%  Similarity=0.052  Sum_probs=31.9

Q ss_pred             cccCCCCCcCcccccccccCCeEE---------EEEecCCC--cEEEEEcCCCeEEEEEcCCCC
Q 021657           73 DKAADGPSVGPRGIYNGHEDTVED---------VTFCPSSA--QEFCSVGDDSCLILWDARVGT  125 (309)
Q Consensus        73 ~~~~~~~~~~~~~~~~~~~~~v~~---------~~~~~~~~--~~l~s~~~dg~i~iwd~~~~~  125 (309)
                      +...|..+++..-.++.....+++         +....+|+  ..++.+..+|.+.+.|..+++
T Consensus       273 ~vAld~~TG~~~W~~Q~~~~D~wD~d~~~~p~l~d~~~~G~~~~~v~~~~K~G~~~vlDr~tG~  336 (527)
T TIGR03075       273 IVARDPDTGKIKWHYQTTPHDEWDYDGVNEMILFDLKKDGKPRKLLAHADRNGFFYVLDRTNGK  336 (527)
T ss_pred             EEEEccccCCEEEeeeCCCCCCccccCCCCcEEEEeccCCcEEEEEEEeCCCceEEEEECCCCc
Confidence            344456666665544432222221         22223553  478899999999999998887

This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.

>PF14727 PHTB1_N: PTHB1 N-terminus

Probab=92.87  E-value=5  Score=33.59  Aligned_cols=116  Identities=13%  Similarity=0.181  Sum_probs=67.0

Q ss_pred             cCCCcEEEEEcCCCeEEEEEcCCCCcce--EEEeeccCCceeEEEeccC----CCCeEEEEcCCCcEEEEecCCCCCC-C
Q 021657          101 PSSAQEFCSVGDDSCLILWDARVGTSPV--IKVEKAHDADLHCVDWNPL----DDNLILTGSADNSVRMFDRRNLTSN-G  173 (309)
Q Consensus       101 ~~~~~~l~s~~~dg~i~iwd~~~~~~~~--~~~~~~~~~~v~~~~~~~~----~~~~l~~~~~dg~i~i~d~~~~~~~-~  173 (309)
                      +++...++.|+..|.++||+........  ......-..+|..+..-+.    +...||+ -.-..+.+|.+...... .
T Consensus        34 ~~~~d~IivGS~~G~LrIy~P~~~~~~~~~lllE~~l~~PILqv~~G~F~s~~~~~~LaV-LhP~kl~vY~v~~~~g~~~  112 (418)
T PF14727_consen   34 PSGSDKIIVGSYSGILRIYDPSGNEFQPEDLLLETQLKDPILQVECGKFVSGSEDLQLAV-LHPRKLSVYSVSLVDGTVE  112 (418)
T ss_pred             CCCccEEEEeccccEEEEEccCCCCCCCccEEEEEecCCcEEEEEeccccCCCCcceEEE-ecCCEEEEEEEEecCCCcc
Confidence            4455789999999999999986544221  2222334578888876431    2234444 45678888888442210 0


Q ss_pred             CC--CceeeeccCC--CCeeEEEEec----CCCcEEEEecCCCcEEEEeCCc
Q 021657          174 VG--SPINKFEGHS--AAVLCVQWSP----DKSSVFGSSAEDGLLNIWDYEK  217 (309)
Q Consensus       174 ~~--~~~~~~~~~~--~~v~~~~~~~----~~~~l~~~~~~dg~i~iwd~~~  217 (309)
                      .+  -.+..+..|.  .....+++-|    .++.+++.=+.||.+.+|+-+.
T Consensus       113 ~g~~~~L~~~yeh~l~~~a~nm~~G~Fgg~~~~~~IcVQS~DG~L~~feqe~  164 (418)
T PF14727_consen  113 HGNQYQLELIYEHSLQRTAYNMCCGPFGGVKGRDFICVQSMDGSLSFFEQES  164 (418)
T ss_pred             cCcEEEEEEEEEEecccceeEEEEEECCCCCCceEEEEEecCceEEEEeCCc
Confidence            01  1122222232  2233444433    3245677889999999999876

>PF01731 Arylesterase: Arylesterase; InterPro: IPR002640 The serum paraoxonases/arylesterases are enzymes that catalyse the hydrolysis of the toxic metabolites of a variety of organophosphorus insecticides

Probab=92.80  E-value=0.82  Score=28.44  Aligned_cols=32  Identities=19%  Similarity=0.270  Sum_probs=27.6

Q ss_pred             CCeeEEEEecCCCcEEEEecCCCcEEEEeCCc
Q 021657          186 AAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEK  217 (309)
Q Consensus       186 ~~v~~~~~~~~~~~l~~~~~~dg~i~iwd~~~  217 (309)
                      ...+.|.++|++++|+++....+.|++|..+.
T Consensus        54 ~~aNGI~~s~~~k~lyVa~~~~~~I~vy~~~~   85 (86)
T PF01731_consen   54 SFANGIAISPDKKYLYVASSLAHSIHVYKRHK   85 (86)
T ss_pred             CCCceEEEcCCCCEEEEEeccCCeEEEEEecC
Confidence            45678999999999998888999999998764

The enzymes hydrolyse a broad spectrum of organophosphate substrates, including paraoxon and a number of aromatic carboxylic acid esters (e.g., phenyl acetate), and hence confer resistance to organophosphate toxicity []. Mammals have 3 distinct paraoxonase types, termed PON1-3 [, ]. In mice and humans, the PON genes are found on the same chromosome in close proximity. PON activity has been found in variety of tissues, with highest levels in liver and serum - the source of serum PON is thought to be the liver. Unlike mammals, fish and avian species lack paraoxonase activity. Human and rabbit PONs appear to have two distinct Ca2+ binding sites, one required for stability and one required for catalytic activity. The Ca2+ dependency of PONs suggests a mechanism of hydrolysis where Ca2+ acts as the electrophillic catalyst, like that proposed for phospholipase A2. The paraoxonase enzymes, PON1 and PON3, are high density lipoprotein (HDL)- associated proteins capable of preventing oxidative modification of low density lipoproteins (LPL) []. Although PON2 has oxidative properties, the enzyme does not associate with HDL. Within a given species, PON1, PON2 and PON3 share ~60% amino acid sequence identity, whereas between mammalian species particular PONs (1,2 or 3) share 79-90% identity at the amino acid level. Human PON1 and PON3 share numerous conserved phosphorylation and N-glycosylation sites; however, it is not known whether the PON proteins are modified at these sites, or whether modification at these sites is required for activity in vivo []. This family consists of arylesterases (Also known as serum paraoxonase) 3.1.1.2 from EC. These enzymes hydrolyse organophosphorus esters such as paraoxon and are found in the liver and blood. They confer resistance to organophosphate toxicity []. Human arylesterase (PON1) P27169 from SWISSPROT is associated with HDL and may protect against LDL oxidation [].; GO: 0004064 arylesterase activity

>KOG4460 consensus Nuclear pore complex, Nup88/rNup84 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=92.70  E-value=2.7  Score=35.59  Aligned_cols=87  Identities=23%  Similarity=0.277  Sum_probs=49.3

Q ss_pred             CeeEEEEecCCCcEEEEecCCCcEEEEeCCcccccccCCCCCc------CCCCceeeeecCCCcceeeEEEccCC---Ce
Q 021657          187 AVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTT------NYPAGLFFQHAGHRDKVVDFHWNASD---PW  257 (309)
Q Consensus       187 ~v~~~~~~~~~~~l~~~~~~dg~i~iwd~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~v~~~~~~~~~---~~  257 (309)
                      .|..+..++.|.. ++-.+.+|.+.++=-+.+++.-.......      ......++... ..-.+..++|+|+.   +.
T Consensus       105 eV~~vl~s~~GS~-VaL~G~~Gi~vMeLp~rwG~~s~~eDgk~~v~CRt~~i~~~~ftss-~~ltl~Qa~WHP~S~~D~h  182 (741)
T KOG4460|consen  105 EVYQVLLSPTGSH-VALIGIKGLMVMELPKRWGKNSEFEDGKSTVNCRTTPVAERFFTSS-TSLTLKQAAWHPSSILDPH  182 (741)
T ss_pred             EEEEEEecCCCce-EEEecCCeeEEEEchhhcCccceecCCCceEEEEeecccceeeccC-CceeeeeccccCCccCCce
Confidence            4677888999996 45666688776665444443322111100      00111122222 23357889999975   44


Q ss_pred             EEEEecCCCCCCCCCCeEEEEEcccc
Q 021657          258 TVVSVSDDCDSTGGGGTLQIWRMSDL  283 (309)
Q Consensus       258 ~~~s~s~d~~s~~~dg~v~vw~~~~~  283 (309)
                      +++-.+        |+.+++|++...
T Consensus       183 L~iL~s--------dnviRiy~lS~~  200 (741)
T KOG4460|consen  183 LVLLTS--------DNVIRIYSLSEP  200 (741)
T ss_pred             EEEEec--------CcEEEEEecCCc
Confidence            443333        379999999853

>KOG1900 consensus Nuclear pore complex, Nup155 component (D Nup154, sc Nup157/Nup170) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=92.55  E-value=0.87  Score=42.63  Aligned_cols=74  Identities=15%  Similarity=0.211  Sum_probs=50.8

Q ss_pred             cCCeEEEEEecCCCcEEEEEcCCCeEEEEEcC----CCC----c--------------ceEEEee-ccCCceeEEEeccC
Q 021657           91 EDTVEDVTFCPSSAQEFCSVGDDSCLILWDAR----VGT----S--------------PVIKVEK-AHDADLHCVDWNPL  147 (309)
Q Consensus        91 ~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~----~~~----~--------------~~~~~~~-~~~~~v~~~~~~~~  147 (309)
                      .-.|+++....+| ++|++| .||  .+|.+.    .+-    .              +....+. .+.++|..+.+.. 
T Consensus       178 g~~V~~I~~t~nG-RIF~~G-~dg--~lyEl~Yq~~~gWf~~rc~Kiclt~s~ls~lvPs~~~~~~~~~dpI~qi~ID~-  252 (1311)
T KOG1900|consen  178 GVSVNCITYTENG-RIFFAG-RDG--NLYELVYQAEDGWFGSRCRKICLTKSVLSSLVPSLLSVPGSSKDPIRQITIDN-  252 (1311)
T ss_pred             CceEEEEEeccCC-cEEEee-cCC--CEEEEEEeccCchhhcccccccCchhHHHHhhhhhhcCCCCCCCcceeeEecc-
Confidence            5578899877777 766655 566  455442    110    0              1111222 5677999999998 


Q ss_pred             CCCeEEEEcCCCcEEEEecCCC
Q 021657          148 DDNLILTGSADNSVRMFDRRNL  169 (309)
Q Consensus       148 ~~~~l~~~~~dg~i~i~d~~~~  169 (309)
                      ..+.+.+-+..|+|.+||+...
T Consensus       253 SR~IlY~lsek~~v~~Y~i~~~  274 (1311)
T KOG1900|consen  253 SRNILYVLSEKGTVSAYDIGGN  274 (1311)
T ss_pred             ccceeeeeccCceEEEEEccCC
Confidence            8889999999999999999863

>COG4590 ABC-type uncharacterized transport system, permease component [General function prediction only]

Probab=92.41  E-value=3.1  Score=34.61  Aligned_cols=162  Identities=15%  Similarity=0.177  Sum_probs=90.9

Q ss_pred             ceEEEEECCCCCEEEEecCCCcEEEEeCCccccccccCCccccccCCCCceeecCCCCCCCCcccCCCCCcCcccccccc
Q 021657           11 AEFALAMCPTEPYVLSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGH   90 (309)
Q Consensus        11 ~V~~~~~~~~~~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   90 (309)
                      .|..+-..|||+.|..-+. .++.|+++.+.......                           +.+...++..      
T Consensus       222 ~v~qllL~Pdg~~LYv~~g-~~~~v~~L~~r~l~~rk---------------------------l~~dspg~~~------  267 (733)
T COG4590         222 DVSQLLLTPDGKTLYVRTG-SELVVALLDKRSLQIRK---------------------------LVDDSPGDSR------  267 (733)
T ss_pred             chHhhEECCCCCEEEEecC-CeEEEEeecccccchhh---------------------------hhhcCCCchH------
Confidence            5778889999998776555 68888988753111110                           0000001000      


Q ss_pred             cCCeE-EEEEecCCCcEEEEEcCCCeEEEE-EcCCCCcceEE---EeeccCCceeEEEeccCCCCeEEEEcCCCcEEEEe
Q 021657           91 EDTVE-DVTFCPSSAQEFCSVGDDSCLILW-DARVGTSPVIK---VEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFD  165 (309)
Q Consensus        91 ~~~v~-~~~~~~~~~~~l~s~~~dg~i~iw-d~~~~~~~~~~---~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d  165 (309)
                       ..|+ .+..-. |+.-+..++.||-|.-| |++.+..+...   .++-...++..+.-.. +.+-+++-+..|++..+.
T Consensus       268 -~~Vte~l~lL~-Gg~SLLv~~~dG~vsQWFdvr~~~~p~l~h~R~f~l~pa~~~~l~pe~-~rkgF~~l~~~G~L~~f~  344 (733)
T COG4590         268 -HQVTEQLYLLS-GGFSLLVVHEDGLVSQWFDVRRDGQPHLNHIRNFKLAPAEVQFLLPET-NRKGFYSLYRNGTLQSFY  344 (733)
T ss_pred             -HHHHHHHHHHh-CceeEEEEcCCCceeeeeeeecCCCCcceeeeccccCcccceeecccc-ccceEEEEcCCCceeeee
Confidence             0111 111112 33557788889988877 55544322222   2222223444333222 456788888889988876


Q ss_pred             cCCCCCCCCCCceeeeccCCCCeeEEEEecCCCcEEEEecCCCcEEEEeCCcc
Q 021657          166 RRNLTSNGVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKV  218 (309)
Q Consensus       166 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~dg~i~iwd~~~~  218 (309)
                      ...      .+.+- ++.--..+.-++++|.+.+++ + -+.|.++++.+++.
T Consensus       345 st~------~~~lL-~~~~~~~~~~~~~Sp~~~~Ll-~-e~~gki~~~~l~Nr  388 (733)
T COG4590         345 STS------EKLLL-FERAYQAPQLVAMSPNQAYLL-S-EDQGKIRLAQLENR  388 (733)
T ss_pred             ccc------Cccee-hhhhhcCcceeeeCcccchhe-e-ecCCceEEEEecCC
Confidence            554      23322 222233567789999999854 3 44688999999873

>KOG3616 consensus Selective LIM binding factor [Transcription]

Probab=92.04  E-value=8.7  Score=34.42  Aligned_cols=30  Identities=17%  Similarity=0.231  Sum_probs=26.8

Q ss_pred             ceEEEEECCCCCEEEEecCCCcEEEEeCCc
Q 021657           11 AEFALAMCPTEPYVLSGGKDKSVVLWSIQD   40 (309)
Q Consensus        11 ~V~~~~~~~~~~~l~t~~~dg~i~vwd~~~   40 (309)
                      .++++.-+|.++-++.+..||+|++|+...
T Consensus        16 ~~~aiqshp~~~s~v~~~~d~si~lfn~~~   45 (1636)
T KOG3616|consen   16 FTTAIQSHPGGQSFVLAHQDGSIILFNFIP   45 (1636)
T ss_pred             eeeeeeecCCCceEEEEecCCcEEEEeecc
Confidence            467888899999999999999999999863

>KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only]

Probab=91.97  E-value=0.11  Score=46.14  Aligned_cols=155  Identities=10%  Similarity=0.112  Sum_probs=84.8

Q ss_pred             CCeEEEEEcCCCCcceEEEeeccCCceeEEEeccCCCCeEEEEcCCCcEEEEecCCCCCCCCCCceeeec-----cCCCC
Q 021657          113 DSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFE-----GHSAA  187 (309)
Q Consensus       113 dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~-----~~~~~  187 (309)
                      .+.+++-+...... -....++..+.+-.++|...+...+.  -.-|.+.+||+...+    ++....+.     .-...
T Consensus       110 ~~~vrvaN~~~sm~-~~~l~kgf~G~v~dl~fah~~~pk~~--~~vg~lfVy~vd~l~----G~iq~~l~v~~~~p~gs~  182 (1283)
T KOG1916|consen  110 ENGVRVANQEPSMR-HNELAKGFPGGVGDLQFAHTKCPKGR--RLVGELFVYDVDVLQ----GEIQPQLEVTPITPYGSD  182 (1283)
T ss_pred             hhhhhhccCcchhH-HHHHHhcCCCCcccccccccCChHHH--HHhhhhheeehHhhc----cccccceEEeecCcCCCC
Confidence            35566665543321 01234556677777887543333333  345788999988644    44333332     22344


Q ss_pred             eeEEEEec---CCCcEEEEecCCCcEEEEeCCcccccccCCCCCcCCCCceeeeecCCCcceeeEE-----------Ecc
Q 021657          188 VLCVQWSP---DKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKVVDFH-----------WNA  253 (309)
Q Consensus       188 v~~~~~~~---~~~~l~~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~-----------~~~  253 (309)
                      +.-+.|.|   +..+ +..+-.++.+++........                ..+.+|..++++++           .+|
T Consensus       183 ~~~V~wcp~~~~~~~-ic~~~~~~~i~lL~~~ra~~----------------~l~rsHs~~~~d~a~~~~g~~~l~~lSp  245 (1283)
T KOG1916|consen  183 PQLVSWCPIAVNKVY-ICYGLKGGEIRLLNINRALR----------------SLFRSHSQRVTDMAFFAEGVLKLASLSP  245 (1283)
T ss_pred             cceeeecccccccce-eeeccCCCceeEeeechHHH----------------HHHHhcCCCcccHHHHhhchhhheeeCC
Confidence            56667765   4443 44666778888777655211                12334666665554           456


Q ss_pred             CCCeEEEEecCCCCCCCCCCeEEEEEccccccCChhhHhHhhhcccc
Q 021657          254 SDPWTVVSVSDDCDSTGGGGTLQIWRMSDLIYRPQDEVLAELEKFKA  300 (309)
Q Consensus       254 ~~~~~~~s~s~d~~s~~~dg~v~vw~~~~~~~~~~~~~~~~~~~h~~  300 (309)
                      ||..++        +...||.+++|.+.-. ......|+.+.+.|.+
T Consensus       246 DGtv~a--------~a~~dG~v~f~Qiyi~-g~~~~rclhewkphd~  283 (1283)
T KOG1916|consen  246 DGTVFA--------WAISDGSVGFYQIYIT-GKIVHRCLHEWKPHDK  283 (1283)
T ss_pred             CCcEEE--------EeecCCccceeeeeee-ccccHhhhhccCCCCC
Confidence            665444        3334477777776521 1124578888888873

>TIGR02276 beta_rpt_yvtn 40-residue YVTN family beta-propeller repeat

Probab=91.90  E-value=0.99  Score=23.25  Aligned_cols=23  Identities=13%  Similarity=0.372  Sum_probs=19.4

Q ss_pred             cCCCcEEEEecCCCcEEEEeCCc
Q 021657          195 PDKSSVFGSSAEDGLLNIWDYEK  217 (309)
Q Consensus       195 ~~~~~l~~~~~~dg~i~iwd~~~  217 (309)
                      |++++++++...++.|.++|..+
T Consensus         1 pd~~~lyv~~~~~~~v~~id~~~   23 (42)
T TIGR02276         1 PDGTKLYVTNSGSNTVSVIDTAT   23 (42)
T ss_pred             CCCCEEEEEeCCCCEEEEEECCC
Confidence            57888888887889999999866

This repeat of about 40 amino acids is found in up to 14 copies per protein. Archaea Methanosarcina mazei and Methanosarcina acetivorans each have over 10 genes that encode tandem copies of this repeat, which is also found in other species. PSIPRED predicts with high confidence that each 40-residue repeats contains four beta strands. This model overlaps somewhat with the NHL repeat (Pfam pfam01436) and also shows sequence similarity to the WD domain, G-beta repeat (Pfam pfam00400).

>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases

Probab=91.71  E-value=5.4  Score=32.39  Aligned_cols=26  Identities=8%  Similarity=0.162  Sum_probs=21.4

Q ss_pred             eEEEEECCCCCEEEEecCCCcEEEEeC
Q 021657           12 EFALAMCPTEPYVLSGGKDKSVVLWSI   38 (309)
Q Consensus        12 V~~~~~~~~~~~l~t~~~dg~i~vwd~   38 (309)
                      -++|+|.|||++|++ ...|.|++++.
T Consensus         4 P~~~a~~pdG~l~v~-e~~G~i~~~~~   29 (331)
T PF07995_consen    4 PRSMAFLPDGRLLVA-ERSGRIWVVDK   29 (331)
T ss_dssp             EEEEEEETTSCEEEE-ETTTEEEEEET
T ss_pred             ceEEEEeCCCcEEEE-eCCceEEEEeC
Confidence            379999999977665 55999999993

The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....

>PRK13684 Ycf48-like protein; Provisional

Probab=91.64  E-value=6.4  Score=32.03  Aligned_cols=112  Identities=10%  Similarity=0.102  Sum_probs=61.4

Q ss_pred             cCCeEEEEEecCCCcEEEEEcCCCeEEEEEcCCCCc-ceEEEe-eccCCceeEEEeccCCCCeEEEEcCCCcEEEEecCC
Q 021657           91 EDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTS-PVIKVE-KAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRN  168 (309)
Q Consensus        91 ~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~-~~~~~~-~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~  168 (309)
                      ...++++.+.+++ ..++. +..|.+++=....+.. ...... ......+..+.+.| ++..+++| .+|.+.. ....
T Consensus       214 ~~~l~~i~~~~~g-~~~~v-g~~G~~~~~s~d~G~sW~~~~~~~~~~~~~l~~v~~~~-~~~~~~~G-~~G~v~~-S~d~  288 (334)
T PRK13684        214 SRRLQSMGFQPDG-NLWML-ARGGQIRFNDPDDLESWSKPIIPEITNGYGYLDLAYRT-PGEIWAGG-GNGTLLV-SKDG  288 (334)
T ss_pred             cccceeeeEcCCC-CEEEE-ecCCEEEEccCCCCCccccccCCccccccceeeEEEcC-CCCEEEEc-CCCeEEE-eCCC
Confidence            3578899999987 55554 4567765432333331 111100 01123578889988 66655554 5675543 3333


Q ss_pred             CCCCCCCCceeee---ccCCCCeeEEEEecCCCcEEEEecCCCcEEEEeC
Q 021657          169 LTSNGVGSPINKF---EGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDY  215 (309)
Q Consensus       169 ~~~~~~~~~~~~~---~~~~~~v~~~~~~~~~~~l~~~~~~dg~i~iwd~  215 (309)
                            ++.-...   .......+.+.|..+++ .++ .+..|.|.-|+-
T Consensus       289 ------G~tW~~~~~~~~~~~~~~~~~~~~~~~-~~~-~G~~G~il~~~~  330 (334)
T PRK13684        289 ------GKTWEKDPVGEEVPSNFYKIVFLDPEK-GFV-LGQRGVLLRYVG  330 (334)
T ss_pred             ------CCCCeECCcCCCCCcceEEEEEeCCCc-eEE-ECCCceEEEecC
Confidence                  2222222   22234577888877776 454 455888877763

>PLN02153 epithiospecifier protein

Probab=91.10  E-value=7.3  Score=31.74  Aligned_cols=22  Identities=9%  Similarity=0.095  Sum_probs=14.5

Q ss_pred             cEEEEEcCC-----------CeEEEEEcCCCCc
Q 021657          105 QEFCSVGDD-----------SCLILWDARVGTS  126 (309)
Q Consensus       105 ~~l~s~~~d-----------g~i~iwd~~~~~~  126 (309)
                      ++++.|+.+           ..+.+||..+.+.
T Consensus       139 ~iyv~GG~~~~~~~~~~~~~~~v~~yd~~~~~W  171 (341)
T PLN02153        139 HVYVFGGVSKGGLMKTPERFRTIEAYNIADGKW  171 (341)
T ss_pred             EEEEECCccCCCccCCCcccceEEEEECCCCeE
Confidence            566666643           2477889877664

>PF14727 PHTB1_N: PTHB1 N-terminus

Probab=91.00  E-value=8.5  Score=32.29  Aligned_cols=152  Identities=11%  Similarity=0.109  Sum_probs=85.4

Q ss_pred             CCEEEEecCCCcEEEEeCCccccccccCCccccccCCCCceeecCCCCCCCCcccCCCCCcCcccccccccCCeEEEEEe
Q 021657           21 EPYVLSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFC  100 (309)
Q Consensus        21 ~~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~  100 (309)
                      ...+++||.+|.+|||+.........                                    .+..-..-..+|..+..-
T Consensus        37 ~d~IivGS~~G~LrIy~P~~~~~~~~------------------------------------~lllE~~l~~PILqv~~G   80 (418)
T PF14727_consen   37 SDKIIVGSYSGILRIYDPSGNEFQPE------------------------------------DLLLETQLKDPILQVECG   80 (418)
T ss_pred             ccEEEEeccccEEEEEccCCCCCCCc------------------------------------cEEEEEecCCcEEEEEec
Confidence            45899999999999999853211100                                    000111123566666553


Q ss_pred             c---C-CCcEEEEEcCCCeEEEEEcCCCC-------cceEEEeeccCC--ceeEEEeccCC----CCeEEEEcCCCcEEE
Q 021657          101 P---S-SAQEFCSVGDDSCLILWDARVGT-------SPVIKVEKAHDA--DLHCVDWNPLD----DNLILTGSADNSVRM  163 (309)
Q Consensus       101 ~---~-~~~~l~s~~~dg~i~iwd~~~~~-------~~~~~~~~~~~~--~v~~~~~~~~~----~~~l~~~~~dg~i~i  163 (309)
                      .   . ....||. -.-..+.+|.+....       .........|.-  ....+++-|..    ..++.+-+.||.+.+
T Consensus        81 ~F~s~~~~~~LaV-LhP~kl~vY~v~~~~g~~~~g~~~~L~~~yeh~l~~~a~nm~~G~Fgg~~~~~~IcVQS~DG~L~~  159 (418)
T PF14727_consen   81 KFVSGSEDLQLAV-LHPRKLSVYSVSLVDGTVEHGNQYQLELIYEHSLQRTAYNMCCGPFGGVKGRDFICVQSMDGSLSF  159 (418)
T ss_pred             cccCCCCcceEEE-ecCCEEEEEEEEecCCCcccCcEEEEEEEEEEecccceeEEEEEECCCCCCceEEEEEecCceEEE
Confidence            2   1 2123333 456677788773221       112233333432  33444443322    368888999999999


Q ss_pred             EecCCCCCCCCCCceeeeccCCCCeeEEEEecCCCcEEEEecCCCcEEEEeCCc
Q 021657          164 FDRRNLTSNGVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEK  217 (309)
Q Consensus       164 ~d~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~dg~i~iwd~~~  217 (309)
                      |+-+.      ....+.+.. ---.-.+.+.+.-.. |++++.+..+.-|....
T Consensus       160 feqe~------~~f~~~lp~-~llPgPl~Y~~~tDs-fvt~sss~~l~~Yky~~  205 (418)
T PF14727_consen  160 FEQES------FAFSRFLPD-FLLPGPLCYCPRTDS-FVTASSSWTLECYKYQD  205 (418)
T ss_pred             EeCCc------EEEEEEcCC-CCCCcCeEEeecCCE-EEEecCceeEEEecHHH
Confidence            99776      332333332 222335678887775 45888788898888644

>PF12768 Rax2: Cortical protein marker for cell polarity

Probab=90.84  E-value=6.7  Score=30.87  Aligned_cols=99  Identities=17%  Similarity=0.224  Sum_probs=55.7

Q ss_pred             ccCCeEEEEEecCCCcEEEEEc------CCCeEEEEEcCCCCcceEEE-e-eccCCceeEEEeccCCCC-eEEEEc-CC-
Q 021657           90 HEDTVEDVTFCPSSAQEFCSVG------DDSCLILWDARVGTSPVIKV-E-KAHDADLHCVDWNPLDDN-LILTGS-AD-  158 (309)
Q Consensus        90 ~~~~v~~~~~~~~~~~~l~s~~------~dg~i~iwd~~~~~~~~~~~-~-~~~~~~v~~~~~~~~~~~-~l~~~~-~d-  158 (309)
                      -.+.|+++.|..+. .+++.|.      ....+..||+.+........ . ..-.++|..+.+...+.. +.+.|. .+ 
T Consensus        35 i~G~V~~l~~~~~~-~Llv~G~ft~~~~~~~~la~yd~~~~~w~~~~~~~s~~ipgpv~a~~~~~~d~~~~~~aG~~~~g  113 (281)
T PF12768_consen   35 ISGTVTDLQWASNN-QLLVGGNFTLNGTNSSNLATYDFKNQTWSSLGGGSSNSIPGPVTALTFISNDGSNFWVAGRSANG  113 (281)
T ss_pred             ceEEEEEEEEecCC-EEEEEEeeEECCCCceeEEEEecCCCeeeecCCcccccCCCcEEEEEeeccCCceEEEeceecCC
Confidence            45789999998655 6777665      45678899988776321111 0 122467888887543444 444443 23 


Q ss_pred             -CcEEEEecCCCCCCCCCCceee-eccCCCCeeEEEEec
Q 021657          159 -NSVRMFDRRNLTSNGVGSPINK-FEGHSAAVLCVQWSP  195 (309)
Q Consensus       159 -g~i~i~d~~~~~~~~~~~~~~~-~~~~~~~v~~~~~~~  195 (309)
                       ..|..||-.+      ...+.. .......|..+.+-|
T Consensus       114 ~~~l~~~dGs~------W~~i~~~~~~~~t~I~~l~~~~  146 (281)
T PF12768_consen  114 STFLMKYDGSS------WSSIGSDILGSGTTIRGLQVLP  146 (281)
T ss_pred             CceEEEEcCCc------eEeccccccCCCCEEEEEEEEe
Confidence             3466676554      433333 222234566655543

>KOG1900 consensus Nuclear pore complex, Nup155 component (D Nup154, sc Nup157/Nup170) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=90.61  E-value=5.6  Score=37.76  Aligned_cols=172  Identities=14%  Similarity=0.231  Sum_probs=86.2

Q ss_pred             EEEEEecCCCcEEEEEcCCCeEEEEEcCCCCcceEEEeeccCCceeEEEe-ccC------CCCeEEEEcCCCcEEEEecC
Q 021657           95 EDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDW-NPL------DDNLILTGSADNSVRMFDRR  167 (309)
Q Consensus        95 ~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~-~~~------~~~~l~~~~~dg~i~i~d~~  167 (309)
                      ..+-+-|.=++.-+|  -|+.+.+|+.+++.  ....+.+-...|..+.. -|.      .=++++.-+.--.|.++-+.
T Consensus        82 ~~mGiFpeI~RaWiT--iDn~L~lWny~~~~--e~~~~d~~shtIl~V~LvkPkpgvFv~~IqhlLvvaT~~ei~ilgV~  157 (1311)
T KOG1900|consen   82 TDMGIFPEIGRAWIT--IDNNLFLWNYESDN--ELAEYDGLSHTILKVGLVKPKPGVFVPEIQHLLVVATPVEIVILGVS  157 (1311)
T ss_pred             eeeccchhhcceEEE--eCCeEEEEEcCCCC--ccccccchhhhheeeeeecCCCCcchhhhheeEEecccceEEEEEEE
Confidence            344444442133333  57889999998855  34444555555555543 220      11233333334456555433


Q ss_pred             CCCCCCCC---CceeeeccCCCCeeEEEEecCCCcEEEEecCCCcEEEEeCCcccccccCCCCCcC---------CCCce
Q 021657          168 NLTSNGVG---SPINKFEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTN---------YPAGL  235 (309)
Q Consensus       168 ~~~~~~~~---~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~dg~i~iwd~~~~~~~~~~~~~~~~---------~~~~~  235 (309)
                      -.......   ....++......|+++....+|+ +| -++.||  .+|.+.-....-....+...         .....
T Consensus       158 ~~~~~~~~~~f~~~~~i~~dg~~V~~I~~t~nGR-IF-~~G~dg--~lyEl~Yq~~~gWf~~rc~Kiclt~s~ls~lvPs  233 (1311)
T KOG1900|consen  158 FDEFTGELSIFNTSFKISVDGVSVNCITYTENGR-IF-FAGRDG--NLYELVYQAEDGWFGSRCRKICLTKSVLSSLVPS  233 (1311)
T ss_pred             eccccCcccccccceeeecCCceEEEEEeccCCc-EE-EeecCC--CEEEEEEeccCchhhcccccccCchhHHHHhhhh
Confidence            21100000   01122223355688998888888 56 455577  45554321111111110000         00001


Q ss_pred             eeeec-CCCcceeeEEEccCCCeEEEEecCCCCCCCCCCeEEEEEccc
Q 021657          236 FFQHA-GHRDKVVDFHWNASDPWTVVSVSDDCDSTGGGGTLQIWRMSD  282 (309)
Q Consensus       236 ~~~~~-~~~~~v~~~~~~~~~~~~~~s~s~d~~s~~~dg~v~vw~~~~  282 (309)
                      +..+. .+..+|..++...... ++.+-++.       |+|.+|++..
T Consensus       234 ~~~~~~~~~dpI~qi~ID~SR~-IlY~lsek-------~~v~~Y~i~~  273 (1311)
T KOG1900|consen  234 LLSVPGSSKDPIRQITIDNSRN-ILYVLSEK-------GTVSAYDIGG  273 (1311)
T ss_pred             hhcCCCCCCCcceeeEeccccc-eeeeeccC-------ceEEEEEccC
Confidence            22333 6778999999987554 55555555       9999999985

>PF02333 Phytase: Phytase; InterPro: IPR003431 Phytase (3

Probab=90.38  E-value=9  Score=31.57  Aligned_cols=149  Identities=12%  Similarity=0.138  Sum_probs=83.8

Q ss_pred             CeEEEEEcCCCCcceEEEee-------ccCCceeEEEe--ccCCCC-eEEEEcCCCcEEEEecCCCCC-CCCCCceeeec
Q 021657          114 SCLILWDARVGTSPVIKVEK-------AHDADLHCVDW--NPLDDN-LILTGSADNSVRMFDRRNLTS-NGVGSPINKFE  182 (309)
Q Consensus       114 g~i~iwd~~~~~~~~~~~~~-------~~~~~v~~~~~--~~~~~~-~l~~~~~dg~i~i~d~~~~~~-~~~~~~~~~~~  182 (309)
                      ..|++|.+..... ....+.       .....++.+|+  +|.++. +.+....+|.+..|.+..... ....+.+++|.
T Consensus       127 n~l~~f~id~~~g-~L~~v~~~~~p~~~~~~e~yGlcly~~~~~g~~ya~v~~k~G~~~Qy~L~~~~~g~v~~~lVR~f~  205 (381)
T PF02333_consen  127 NSLRLFRIDPDTG-ELTDVTDPAAPIATDLSEPYGLCLYRSPSTGALYAFVNGKDGRVEQYELTDDGDGKVSATLVREFK  205 (381)
T ss_dssp             -EEEEEEEETTTT-EEEE-CBTTC-EE-SSSSEEEEEEEE-TTT--EEEEEEETTSEEEEEEEEE-TTSSEEEEEEEEEE
T ss_pred             CeEEEEEecCCCC-cceEcCCCCcccccccccceeeEEeecCCCCcEEEEEecCCceEEEEEEEeCCCCcEeeEEEEEec
Confidence            4699998754322 122221       11234677776  342344 666778899999888863221 11135677887


Q ss_pred             cCCCCeeEEEEecCCCcEEEEecCCCcEEEEeCCcccccccCCCCCcCCCCceeeeecC--CCcceeeEEEc--cCC-Ce
Q 021657          183 GHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAG--HRDKVVDFHWN--ASD-PW  257 (309)
Q Consensus       183 ~~~~~v~~~~~~~~~~~l~~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~v~~~~~~--~~~-~~  257 (309)
                      . ...+..+.......+|+ .+-++.-|.-|+.+.....          ....+....+  ....|-.|++-  +++ .+
T Consensus       206 ~-~sQ~EGCVVDDe~g~LY-vgEE~~GIW~y~Aep~~~~----------~~~~v~~~~g~~l~aDvEGlaly~~~~g~gY  273 (381)
T PF02333_consen  206 V-GSQPEGCVVDDETGRLY-VGEEDVGIWRYDAEPEGGN----------DRTLVASADGDGLVADVEGLALYYGSDGKGY  273 (381)
T ss_dssp             --SS-EEEEEEETTTTEEE-EEETTTEEEEEESSCCC-S------------EEEEEBSSSSB-S-EEEEEEEE-CCC-EE
T ss_pred             C-CCcceEEEEecccCCEE-EecCccEEEEEecCCCCCC----------cceeeecccccccccCccceEEEecCCCCeE
Confidence            4 45788899988888765 7888887777777642211          1122322222  34567777764  333 46


Q ss_pred             EEEEecCCCCCCCCCCeEEEEEccc
Q 021657          258 TVVSVSDDCDSTGGGGTLQIWRMSD  282 (309)
Q Consensus       258 ~~~s~s~d~~s~~~dg~v~vw~~~~  282 (309)
                      |++|.-.+       ++..||+...
T Consensus       274 LivSsQG~-------~sf~Vy~r~~  291 (381)
T PF02333_consen  274 LIVSSQGD-------NSFAVYDREG  291 (381)
T ss_dssp             EEEEEGGG-------TEEEEEESST
T ss_pred             EEEEcCCC-------CeEEEEecCC
Confidence            77755444       7999999874

1.3.8 from EC) (phytate 3-phosphatase) is a secreted enzyme which hydrolyses phytate to release inorganic phosphate. This family appears to represent a novel enzyme that shows phytase activity () and has been shown to consist of a single structural unit with a six-bladed propeller folding architecture ().; GO: 0016158 3-phytase activity; PDB: 3AMS_A 3AMR_A 1QLG_A 2POO_A 1H6L_A 1CVM_A 1POO_A.

>COG5276 Uncharacterized conserved protein [Function unknown]

Probab=90.21  E-value=7.7  Score=30.48  Aligned_cols=134  Identities=14%  Similarity=0.062  Sum_probs=74.5

Q ss_pred             EEEcCCCCcceEEEeeccCCceeEEEeccCCCCeEEEEcCCCcEEEEecCCCCCCCCCCceeeeccCCCCeeEEEEecCC
Q 021657          118 LWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWSPDK  197 (309)
Q Consensus       118 iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~  197 (309)
                      +|+..............-.+-+..+.++   +++...+..+.-+++.|+.++..   ...+..+. ..+.-.++..  .|
T Consensus        68 itn~~~~t~~~l~~~i~~~~l~~Dv~vs---e~yvyvad~ssGL~IvDIS~P~s---P~~~~~ln-t~gyaygv~v--sG  138 (370)
T COG5276          68 ITNVSLQTHDVLLSVINARDLFADVRVS---EEYVYVADWSSGLRIVDISTPDS---PTLIGFLN-TDGYAYGVYV--SG  138 (370)
T ss_pred             ccCcccccCcceEEEEehhhhhheeEec---ccEEEEEcCCCceEEEeccCCCC---cceecccc-CCceEEEEEe--cC
Confidence            4554433332333333445566777775   46777777888899999998642   22222222 2233444444  56


Q ss_pred             CcEEEEecCCCcEEEEeCCcccccccCCCCCcCCCCceeeeecCCCcceeeEEEccCCCeEEEEecCCCCCCCCCCeEEE
Q 021657          198 SSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKVVDFHWNASDPWTVVSVSDDCDSTGGGGTLQI  277 (309)
Q Consensus       198 ~~l~~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~s~d~~s~~~dg~v~v  277 (309)
                      ++..++.- |.-+.+.|+..+.++            ++.............++.+  |++-.+        +..|+-+++
T Consensus       139 n~aYVadl-ddgfLivdvsdpssP------------~lagrya~~~~d~~~v~IS--Gn~AYv--------A~~d~GL~i  195 (370)
T COG5276         139 NYAYVADL-DDGFLIVDVSDPSSP------------QLAGRYALPGGDTHDVAIS--GNYAYV--------AWRDGGLTI  195 (370)
T ss_pred             CEEEEeec-cCcEEEEECCCCCCc------------eeeeeeccCCCCceeEEEe--cCeEEE--------EEeCCCeEE
Confidence            76654443 445678999884433            2333333333334556666  444342        234478889


Q ss_pred             EEcccc
Q 021657          278 WRMSDL  283 (309)
Q Consensus       278 w~~~~~  283 (309)
                      -|+.++
T Consensus       196 vDVSnp  201 (370)
T COG5276         196 VDVSNP  201 (370)
T ss_pred             EEccCC
Confidence            999864

>TIGR02276 beta_rpt_yvtn 40-residue YVTN family beta-propeller repeat

Probab=90.04  E-value=1.6  Score=22.42  Aligned_cols=31  Identities=13%  Similarity=0.244  Sum_probs=21.4

Q ss_pred             cCCCcEEEEEcCCCeEEEEEcCCCCcceEEEee
Q 021657          101 PSSAQEFCSVGDDSCLILWDARVGTSPVIKVEK  133 (309)
Q Consensus       101 ~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~  133 (309)
                      |+++.++++.-.++.|.++|..+.+  ......
T Consensus         1 pd~~~lyv~~~~~~~v~~id~~~~~--~~~~i~   31 (42)
T TIGR02276         1 PDGTKLYVTNSGSNTVSVIDTATNK--VIATIP   31 (42)
T ss_pred             CCCCEEEEEeCCCCEEEEEECCCCe--EEEEEE
Confidence            4565566667678999999997766  444443

This repeat of about 40 amino acids is found in up to 14 copies per protein. Archaea Methanosarcina mazei and Methanosarcina acetivorans each have over 10 genes that encode tandem copies of this repeat, which is also found in other species. PSIPRED predicts with high confidence that each 40-residue repeats contains four beta strands. This model overlaps somewhat with the NHL repeat (Pfam pfam01436) and also shows sequence similarity to the WD domain, G-beta repeat (Pfam pfam00400).

>PLN02193 nitrile-specifier protein

Probab=90.01  E-value=12  Score=32.26  Aligned_cols=62  Identities=6%  Similarity=-0.040  Sum_probs=32.9

Q ss_pred             cEEEEEcCCC-----eEEEEEcCCCCcceEEEe---eccCCceeEEEeccCCCCeEEEEcCC----CcEEEEecCCC
Q 021657          105 QEFCSVGDDS-----CLILWDARVGTSPVIKVE---KAHDADLHCVDWNPLDDNLILTGSAD----NSVRMFDRRNL  169 (309)
Q Consensus       105 ~~l~s~~~dg-----~i~iwd~~~~~~~~~~~~---~~~~~~v~~~~~~~~~~~~l~~~~~d----g~i~i~d~~~~  169 (309)
                      ++++.|+.++     .+..||+.+.+.......   ....... .++..  ++++++.++.+    ..+.+||+.+.
T Consensus       280 ~iYv~GG~~~~~~~~~~~~yd~~t~~W~~~~~~~~~~~~R~~~-~~~~~--~gkiyviGG~~g~~~~dv~~yD~~t~  353 (470)
T PLN02193        280 NVYVFGGVSATARLKTLDSYNIVDKKWFHCSTPGDSFSIRGGA-GLEVV--QGKVWVVYGFNGCEVDDVHYYDPVQD  353 (470)
T ss_pred             EEEEECCCCCCCCcceEEEEECCCCEEEeCCCCCCCCCCCCCc-EEEEE--CCcEEEEECCCCCccCceEEEECCCC
Confidence            6677776543     467788776653221110   0111111 22222  56777777655    45889998873

>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A

Probab=89.71  E-value=10  Score=31.22  Aligned_cols=114  Identities=18%  Similarity=0.140  Sum_probs=53.7

Q ss_pred             EEEecCCCcEEEEEcCCCeEEEEEcCCCCcceEEEeeccCCceeEEEeccC-CCCeEEEEc-------------------
Q 021657           97 VTFCPSSAQEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPL-DDNLILTGS-------------------  156 (309)
Q Consensus        97 ~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~-~~~~l~~~~-------------------  156 (309)
                      ..++|++..++.. .....|+-.|+++.+.  ..........+-...|..+ ++..++-.-                   
T Consensus        86 ~~~s~~~~~~~Yv-~~~~~l~~vdL~T~e~--~~vy~~p~~~~g~gt~v~n~d~t~~~g~e~~~~d~~~l~~~~~f~e~~  162 (386)
T PF14583_consen   86 GFLSPDDRALYYV-KNGRSLRRVDLDTLEE--RVVYEVPDDWKGYGTWVANSDCTKLVGIEISREDWKPLTKWKGFREFY  162 (386)
T ss_dssp             -EE-TTSSEEEEE-ETTTEEEEEETTT--E--EEEEE--TTEEEEEEEEE-TTSSEEEEEEEEGGG-----SHHHHHHHH
T ss_pred             eEEecCCCeEEEE-ECCCeEEEEECCcCcE--EEEEECCcccccccceeeCCCccEEEEEEEeehhccCccccHHHHHHH
Confidence            4556776343333 3445778888888773  3333334444444555421 333332211                   


Q ss_pred             ---CCCcEEEEecCCCCCCCCCCceeeeccCCCCeeEEEEecCCCcEEEEecC---CC-cEEEEeCCcccc
Q 021657          157 ---ADNSVRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAE---DG-LLNIWDYEKVGK  220 (309)
Q Consensus       157 ---~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~---dg-~i~iwd~~~~~~  220 (309)
                         ....|.-.|+++      ++....+. ....+..+.|+|....+++-|-+   +. .-+||-++..+.
T Consensus       163 ~a~p~~~i~~idl~t------G~~~~v~~-~~~wlgH~~fsP~dp~li~fCHEGpw~~Vd~RiW~i~~dg~  226 (386)
T PF14583_consen  163 EARPHCRIFTIDLKT------GERKVVFE-DTDWLGHVQFSPTDPTLIMFCHEGPWDLVDQRIWTINTDGS  226 (386)
T ss_dssp             HC---EEEEEEETTT--------EEEEEE-ESS-EEEEEEETTEEEEEEEEE-S-TTTSS-SEEEEETTS-
T ss_pred             hhCCCceEEEEECCC------CceeEEEe-cCccccCcccCCCCCCEEEEeccCCcceeceEEEEEEcCCC
Confidence               112244455555      44433333 45678899999988887755432   22 136777766443

>PF11715 Nup160: Nucleoporin Nup120/160; InterPro: IPR021717 Nup120 is conserved from fungi to plants to humans, and is homologous with the Nup160 of vertebrates

Probab=88.85  E-value=2.8  Score=36.72  Aligned_cols=71  Identities=14%  Similarity=0.131  Sum_probs=40.4

Q ss_pred             cEEEEEcCCCeEEEEEcCC---CCcceEEEee-c--------------------cCCceeEEEecc---CCCCeEEEEcC
Q 021657          105 QEFCSVGDDSCLILWDARV---GTSPVIKVEK-A--------------------HDADLHCVDWNP---LDDNLILTGSA  157 (309)
Q Consensus       105 ~~l~s~~~dg~i~iwd~~~---~~~~~~~~~~-~--------------------~~~~v~~~~~~~---~~~~~l~~~~~  157 (309)
                      ..|+.+..||.+.......   .......... .                    .......++++.   .+..++++.+.
T Consensus       159 ~~l~v~~~dG~ll~l~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~tl~~  238 (547)
T PF11715_consen  159 ANLVVSLQDGGLLRLKRSSGDSDGSVWSEELFNDSSWLRSLSGLFPWSYRGDNSSSSVAASLAVSSSEINDDTFLFTLSR  238 (547)
T ss_dssp             SBEEEEESSS-EEEEEES----SSS-EE----STHHHHHCCTTTS-TT---SSSS---EEEEEE-----ETTTEEEEEET
T ss_pred             CEEEEEECCCCeEEEECCcccCCCCeeEEEEeCCCchhhhhhCcCCcccccCCCCCCccceEEEecceeCCCCEEEEEeC
Confidence            5678888899888887764   1110111100 0                    112334444433   15678999999


Q ss_pred             CCcEEEEecCCCCCCCCCCceeee
Q 021657          158 DNSVRMFDRRNLTSNGVGSPINKF  181 (309)
Q Consensus       158 dg~i~i~d~~~~~~~~~~~~~~~~  181 (309)
                      |+++|+||+.+      ++++.+.
T Consensus       239 D~~LRiW~l~t------~~~~~~~  256 (547)
T PF11715_consen  239 DHTLRIWSLET------GQCLATI  256 (547)
T ss_dssp             TSEEEEEETTT------TCEEEEE
T ss_pred             CCeEEEEECCC------CeEEEEe
Confidence            99999999999      6665443

The nuclear core complex, or NPC, mediates macromolecular transport across the nuclear envelope. Deletion of the NUP120 gene causes clustering of NPCs at one side of the nuclear envelope, moderate nucleolar fragmentation and slower cell growth []. The vertebrate NPC is estimated to contain between 30 and 60 different proteins. most of which are not known. Two important ones in creating the nucleoporin basket are Nup98 and Nup153, and Nup120, in conjunction with Nup 133, interacts with these two and itself plays a role in mRNA export []. Nup160, Nup133, Nup96, and Nup107 are all targets of phosphorylation. The phosphorylation sites are clustered mainly at the N-terminal regions of these proteins, which are predicted to be natively disordered. The entire Nup107-160 subcomplex is stable throughout the cell cycle, thus it seems unlikely that phosphorylation affects interactions within the Nup107-160 subcomplex, but rather that it regulates the association of the subcomplex with the NPC and other proteins []. ; PDB: 3F7F_D 3H7N_D 3HXR_A.

>PF12768 Rax2: Cortical protein marker for cell polarity

Probab=88.82  E-value=10  Score=29.93  Aligned_cols=52  Identities=17%  Similarity=0.328  Sum_probs=34.4

Q ss_pred             CcEEEEecCCCCCCCCCCceeeeccCCCCeeEEEEecCCCcEEEEec------CCCcEEEEeCCc
Q 021657          159 NSVRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSA------EDGLLNIWDYEK  217 (309)
Q Consensus       159 g~i~i~d~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~------~dg~i~iwd~~~  217 (309)
                      ..|++||..+.+      =..--.+-.+.|++|.|..+.+ |+++|.      ....+..||+.+
T Consensus        16 ~~lC~yd~~~~q------W~~~g~~i~G~V~~l~~~~~~~-Llv~G~ft~~~~~~~~la~yd~~~   73 (281)
T PF12768_consen   16 PGLCLYDTDNSQ------WSSPGNGISGTVTDLQWASNNQ-LLVGGNFTLNGTNSSNLATYDFKN   73 (281)
T ss_pred             CEEEEEECCCCE------eecCCCCceEEEEEEEEecCCE-EEEEEeeEECCCCceeEEEEecCC
Confidence            358999988632      1111223457899999986555 676664      456688899887

>PF13449 Phytase-like: Esterase-like activity of phytase

Probab=87.50  E-value=14  Score=29.98  Aligned_cols=169  Identities=20%  Similarity=0.300  Sum_probs=93.1

Q ss_pred             cCCeEEEEEecCCCcEEEEEcCCCe------EEEEEcCCC--CcceE-----EEeeccCC--------ceeEEEeccCCC
Q 021657           91 EDTVEDVTFCPSSAQEFCSVGDDSC------LILWDARVG--TSPVI-----KVEKAHDA--------DLHCVDWNPLDD  149 (309)
Q Consensus        91 ~~~v~~~~~~~~~~~~l~s~~~dg~------i~iwd~~~~--~~~~~-----~~~~~~~~--------~v~~~~~~~~~~  149 (309)
                      -+.+..+.+.+++ ..+++-+++|.      +...++...  .....     ..+....+        ..-+|++.+ ++
T Consensus        19 ~GGlSgl~~~~~~-~~~~avSD~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~G~~~~~~~~D~Egi~~~~-~g   96 (326)
T PF13449_consen   19 FGGLSGLDYDPDD-GRFYAVSDRGPNKGPPRFYTFRIDYDQGGIGGVTILDMIPLRDPDGQPFPKNGLDPEGIAVPP-DG   96 (326)
T ss_pred             cCcEeeEEEeCCC-CEEEEEECCCCCCCCCcEEEEEeeccCCCccceEeccceeccCCCCCcCCcCCCChhHeEEec-CC
Confidence            3567889998765 45666677777      665555431  10001     11111111        344788855 78


Q ss_pred             CeEEEEcCC------CcEEEEecCCCCCCCCCCceeee---------------ccCCCCeeEEEEecCCCcEEEEec---
Q 021657          150 NLILTGSAD------NSVRMFDRRNLTSNGVGSPINKF---------------EGHSAAVLCVQWSPDKSSVFGSSA---  205 (309)
Q Consensus       150 ~~l~~~~~d------g~i~i~d~~~~~~~~~~~~~~~~---------------~~~~~~v~~~~~~~~~~~l~~~~~---  205 (309)
                      .++++.-.+      -.|+.++..       ++.+..+               ...+....+|+++|+|+.|+++.-   
T Consensus        97 ~~~is~E~~~~~~~~p~I~~~~~~-------G~~~~~~~vP~~~~~~~~~~~~~~~N~G~E~la~~~dG~~l~~~~E~~l  169 (326)
T PF13449_consen   97 SFWISSEGGRTGGIPPRIRRFDLD-------GRVIRRFPVPAAFLPDANGTSGRRNNRGFEGLAVSPDGRTLFAAMESPL  169 (326)
T ss_pred             CEEEEeCCccCCCCCCEEEEECCC-------CcccceEccccccccccCccccccCCCCeEEEEECCCCCEEEEEECccc
Confidence            888777667      678888765       2222222               123456889999999996553321   


Q ss_pred             -CCC---------cEEEEeCCcc--cccccCCCCCcCCCCceeeeecC-----CCcceeeEEEccCCCeEEEEecCCCCC
Q 021657          206 -EDG---------LLNIWDYEKV--GKKVEQGPRTTNYPAGLFFQHAG-----HRDKVVDFHWNASDPWTVVSVSDDCDS  268 (309)
Q Consensus       206 -~dg---------~i~iwd~~~~--~~~~~~~~~~~~~~~~~~~~~~~-----~~~~v~~~~~~~~~~~~~~s~s~d~~s  268 (309)
                       .|+         .++++.+...  +...          .+..+.+..     ....+..+.+.+++..+++--+.   .
T Consensus       170 ~~d~~~~~~~~~~~~ri~~~d~~~~~~~~----------~~~~y~ld~~~~~~~~~~isd~~al~d~~lLvLER~~---~  236 (326)
T PF13449_consen  170 KQDGPRANPDNGSPLRILRYDPKTPGEPV----------AEYAYPLDPPPTAPGDNGISDIAALPDGRLLVLERDF---S  236 (326)
T ss_pred             cCCCcccccccCceEEEEEecCCCCCccc----------eEEEEeCCccccccCCCCceeEEEECCCcEEEEEccC---C
Confidence             122         1455544431  2111          112233322     45678999999988877765553   2


Q ss_pred             CCCCCeEEEEEcc
Q 021657          269 TGGGGTLQIWRMS  281 (309)
Q Consensus       269 ~~~dg~v~vw~~~  281 (309)
                      .+....++|+.+.
T Consensus       237 ~~~~~~~ri~~v~  249 (326)
T PF13449_consen  237 PGTGNYKRIYRVD  249 (326)
T ss_pred             CCccceEEEEEEE
Confidence            2244556666554

>TIGR03118 PEPCTERM_chp_1 conserved hypothetical protein TIGR03118

Probab=87.43  E-value=13  Score=29.52  Aligned_cols=122  Identities=10%  Similarity=0.106  Sum_probs=73.8

Q ss_pred             CeEEEEEecCCCcEEEEEcCCCeEEEEEcCCC-----CcceEEEeec-----cCCceeEEEeccCCC------------C
Q 021657           93 TVEDVTFCPSSAQEFCSVGDDSCLILWDARVG-----TSPVIKVEKA-----HDADLHCVDWNPLDD------------N  150 (309)
Q Consensus        93 ~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~-----~~~~~~~~~~-----~~~~v~~~~~~~~~~------------~  150 (309)
                      .-+.|+++|.+ .+-++....+...+||....     ..+....+..     .....+.+.|+. ..            .
T Consensus        24 N~WGia~~p~~-~~WVadngT~~~TlYdg~~~~~~g~~~~L~vtiP~~~~~~~~~~PTGiVfN~-~~~F~vt~~g~~~~a  101 (336)
T TIGR03118        24 NAWGLSYRPGG-PFWVANTGTGTATLYVGNPDTQPLVQDPLVVVIPAPPPLAAEGTPTGQVFNG-SDTFVVSGEGITGPS  101 (336)
T ss_pred             ccceeEecCCC-CEEEecCCcceEEeecCCcccccCCccceEEEecCCCCCCCCCCccEEEEeC-CCceEEcCCCcccce
Confidence            45789999988 66677777789999998611     2223333321     234577777764 22            2


Q ss_pred             eEEEEcCCCcEEEEecCCCCCCCCCCceeeec-cCCCCe-eEEEEe--cCCCcEEEEecCCCcEEEEeCCc
Q 021657          151 LILTGSADNSVRMFDRRNLTSNGVGSPINKFE-GHSAAV-LCVQWS--PDKSSVFGSSAEDGLLNIWDYEK  217 (309)
Q Consensus       151 ~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~-~~~~~v-~~~~~~--~~~~~l~~~~~~dg~i~iwd~~~  217 (309)
                      .++.+++||+|.-|........- ......+. .....| ..+++.  ..+.+|+++--.+++|.+||-.-
T Consensus       102 ~Fif~tEdGTisaW~p~v~~t~~-~~~~~~~d~s~~gavYkGLAi~~~~~~~~LYaadF~~g~IDVFd~~f  171 (336)
T TIGR03118       102 RFLFVTEDGTLSGWAPALGTTRM-TRAEIVVDASQQGNVYKGLAVGPTGGGDYLYAANFRQGRIDVFKGSF  171 (336)
T ss_pred             eEEEEeCCceEEeecCcCCcccc-cccEEEEccCCCcceeeeeEEeecCCCceEEEeccCCCceEEecCcc
Confidence            36778899999999854311000 01112222 112333 345554  34677888888899999998765

This model describes and uncharacterized conserved hypothetical protein. Members are found with the C-terminal putative exosortase interaction domain, PEP-CTERM, in Nitrosospira multiformis, Rhodoferax ferrireducens, Solibacter usitatus Ellin6076, and Acidobacteria bacterium Ellin345. It is found without the PEP-CTERM domain in several other species, including Burkholderia ambifaria, Gloeobacter violaceus PCC 7421, and three copies in the Acanthamoeba polyphaga mimivirus.

>KOG3522 consensus Predicted guanine nucleotide exchange factor [Signal transduction mechanisms]

Probab=87.17  E-value=4.1  Score=36.62  Aligned_cols=136  Identities=11%  Similarity=0.167  Sum_probs=79.8

Q ss_pred             EEEEEcCCCeEEEEEcCCCCcc--eEEEeeccCCceeEEEeccCCCCeEEEEcCCCcEEEEecCCCCCCCCCCceeeecc
Q 021657          106 EFCSVGDDSCLILWDARVGTSP--VIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEG  183 (309)
Q Consensus       106 ~l~s~~~dg~i~iwd~~~~~~~--~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~  183 (309)
                      .+..|+.++.+.++.-..+..+  ...........+.++.+++   .-+..|.-||++-.|-- .+.....+.+-..+..
T Consensus       549 Tic~gtq~ssisissss~~s~ke~~~~~~spe~~~v~~l~~ss---~Slgagl~dgt~a~y~r-ap~gSwd~ep~~~~~~  624 (925)
T KOG3522|consen  549 TICLGTQTSSISISSSSLDSIKEVTSEPPSPEHESVKLLLFSS---GSLGAGLIDGTLAVYGR-APSGSWDGEPNISIPT  624 (925)
T ss_pred             cccccCccceeEEeeccCCcccceeccCCCCchhhhhhhhccc---cccccCccCCccccccC-CCCCCCCCCCcccccc
Confidence            4677889999999986533311  1122233345667777655   34555666776655422 2111111333344444


Q ss_pred             CCCCeeEEEEecCCCcEEEEecCCCcEEEEeCCcccccccCCCCCcCCCCceeeeecCCCcceeeEEEccCCCeEEEE
Q 021657          184 HSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKVVDFHWNASDPWTVVS  261 (309)
Q Consensus       184 ~~~~v~~~~~~~~~~~l~~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s  261 (309)
                      ...++.+.++..|   . +.++.+|.|.++...+.....            .......|...|+.+....++-++..+
T Consensus       625 g~lPvrsla~~ed---~-~was~gG~V~vi~~tt~~~~~------------~leahqee~~~Vthm~~~~~gVwvafa  686 (925)
T KOG3522|consen  625 GSLPVRSLAFQED---F-VWASEGGCVHVIPSTTFIRSW------------DLEAHQEEAHSVTHMLYLDNGVWVAFA  686 (925)
T ss_pred             CCccccchhhhhc---e-eeeecCCceEEEechhccccc------------hhHHHHhhcceEEEEEeeCCceEEEEc
Confidence            5678888888776   3 367779999999988733221            122334456678988888766554443

>PF14781 BBS2_N: Ciliary BBSome complex subunit 2, N-terminal

Probab=86.95  E-value=7.7  Score=26.46  Aligned_cols=112  Identities=12%  Similarity=0.071  Sum_probs=67.4

Q ss_pred             EEEEecCCCcEEEEEcCCCeEEEEEcCCCCcc-----eEEEeeccCCceeEEEeccC----CCCeEEEEcCCCcEEEEec
Q 021657           96 DVTFCPSSAQEFCSVGDDSCLILWDARVGTSP-----VIKVEKAHDADLHCVDWNPL----DDNLILTGSADNSVRMFDR  166 (309)
Q Consensus        96 ~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~-----~~~~~~~~~~~v~~~~~~~~----~~~~l~~~~~dg~i~i~d~  166 (309)
                      .-+|.... ..|++++.-|.|.|++.......     ....+..-...|++++--+.    ....|+.|+. ..+..||+
T Consensus         3 iGkfDG~~-pcL~~aT~~gKV~IH~ph~~~~~~~~~~~~i~~LNin~~italaaG~l~~~~~~D~LliGt~-t~llaYDV   80 (136)
T PF14781_consen    3 IGKFDGVH-PCLACATTGGKVFIHNPHERGQRTGRQDSDISFLNINQEITALAAGRLKPDDGRDCLLIGTQ-TSLLAYDV   80 (136)
T ss_pred             EEEeCCCc-eeEEEEecCCEEEEECCCccccccccccCceeEEECCCceEEEEEEecCCCCCcCEEEEecc-ceEEEEEc
Confidence            34566666 45788888899999987644310     11122344567888865442    3457777764 57889999


Q ss_pred             CCCCCCCCCCceeeeccCCCCeeEEEEecC---CCcEEEEecCCCcEEEEeCCc
Q 021657          167 RNLTSNGVGSPINKFEGHSAAVLCVQWSPD---KSSVFGSSAEDGLLNIWDYEK  217 (309)
Q Consensus       167 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~---~~~l~~~~~~dg~i~iwd~~~  217 (309)
                      ..      ...+.. +.-...++++.+-.-   ...++..| .+..|.=||...
T Consensus        81 ~~------N~d~Fy-ke~~DGvn~i~~g~~~~~~~~l~ivG-Gncsi~Gfd~~G  126 (136)
T PF14781_consen   81 EN------NSDLFY-KEVPDGVNAIVIGKLGDIPSPLVIVG-GNCSIQGFDYEG  126 (136)
T ss_pred             cc------Cchhhh-hhCccceeEEEEEecCCCCCcEEEEC-ceEEEEEeCCCC
Confidence            87      333332 233467888877431   22244344 477787777664

>TIGR03606 non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH family

Probab=86.82  E-value=19  Score=30.74  Aligned_cols=55  Identities=13%  Similarity=0.171  Sum_probs=36.4

Q ss_pred             cCCeEEEEEecCCCcEEEEEcCCCeEEEEEcCCCCcceEEE----ee-ccCCceeEEEecc
Q 021657           91 EDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPVIKV----EK-AHDADLHCVDWNP  146 (309)
Q Consensus        91 ~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~----~~-~~~~~v~~~~~~~  146 (309)
                      -...+.|+|.|++ .+|++--..|.|++++...........    .. ........|+++|
T Consensus        29 L~~Pw~maflPDG-~llVtER~~G~I~~v~~~~~~~~~~~~l~~v~~~~ge~GLlglal~P   88 (454)
T TIGR03606        29 LNKPWALLWGPDN-QLWVTERATGKILRVNPETGEVKVVFTLPEIVNDAQHNGLLGLALHP   88 (454)
T ss_pred             CCCceEEEEcCCC-eEEEEEecCCEEEEEeCCCCceeeeecCCceeccCCCCceeeEEECC
Confidence            3456899999998 777665446999999865443211111    11 1356789999998

PQQ, or pyrroloquinoline-quinone, serves as a cofactor for a number of sugar and alcohol dehydrogenases in a limited number of bacterial species. Most characterized PQQ-dependent enzymes have multiple repeats of a sequence region described by pfam01011 (PQQ enzyme repeat), but this protein family in unusual in lacking that repeat. Below the noise cutoff are related proteins mostly from species that lack PQQ biosynthesis.

>PF07250 Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterPro: IPR009880 This entry represents the N terminus (approximately 300 residues) of a number of plant and fungal glyoxal oxidase enzymes

Probab=86.32  E-value=13  Score=28.54  Aligned_cols=95  Identities=16%  Similarity=0.193  Sum_probs=48.8

Q ss_pred             EEEEEcCCCCcceEEEeeccCCceeEEEeccCCCCeEEEEcC-C--CcEEEEecCCCCCCCCCCce-eeeccCCCCeeEE
Q 021657          116 LILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSA-D--NSVRMFDRRNLTSNGVGSPI-NKFEGHSAAVLCV  191 (309)
Q Consensus       116 i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~-d--g~i~i~d~~~~~~~~~~~~~-~~~~~~~~~v~~~  191 (309)
                      -.+||+.+.+.  .........-..+-.+.+ +|+++.+|+. +  ..+++++............. ..+. ....=-++
T Consensus        48 s~~yD~~tn~~--rpl~v~td~FCSgg~~L~-dG~ll~tGG~~~G~~~ir~~~p~~~~~~~~w~e~~~~m~-~~RWYpT~  123 (243)
T PF07250_consen   48 SVEYDPNTNTF--RPLTVQTDTFCSGGAFLP-DGRLLQTGGDNDGNKAIRIFTPCTSDGTCDWTESPNDMQ-SGRWYPTA  123 (243)
T ss_pred             EEEEecCCCcE--EeccCCCCCcccCcCCCC-CCCEEEeCCCCccccceEEEecCCCCCCCCceECccccc-CCCccccc
Confidence            35788888772  222222333444556778 8999999876 2  35888876541100001100 1122 22333445


Q ss_pred             EEecCCCcEEEEecCC-CcEEEEeC
Q 021657          192 QWSPDKSSVFGSSAED-GLLNIWDY  215 (309)
Q Consensus       192 ~~~~~~~~l~~~~~~d-g~i~iwd~  215 (309)
                      ..-|||+.++ .|+.+ ....+|.-
T Consensus       124 ~~L~DG~vlI-vGG~~~~t~E~~P~  147 (243)
T PF07250_consen  124 TTLPDGRVLI-VGGSNNPTYEFWPP  147 (243)
T ss_pred             eECCCCCEEE-EeCcCCCcccccCC
Confidence            6678999655 55544 33444443

Glyoxal oxidase catalyses the oxidation of aldehydes to carboxylic acids, coupled with reduction of dioxygen to hydrogen peroxide. It is an essential component of the extracellular lignin degradation pathways of the wood-rot fungus Phanerochaete chrysosporium [].

>PF01436 NHL: NHL repeat; InterPro: IPR001258 The NHL repeat, named after NCL-1, HT2A and Lin-41, is found largely in a large number of eukaryotic and prokaryotic proteins

Probab=85.86  E-value=2.4  Score=19.76  Aligned_cols=24  Identities=8%  Similarity=0.170  Sum_probs=19.4

Q ss_pred             EEEEECCCCCEEEEecCCCcEEEE
Q 021657           13 FALAMCPTEPYVLSGGKDKSVVLW   36 (309)
Q Consensus        13 ~~~~~~~~~~~l~t~~~dg~i~vw   36 (309)
                      ..++++++|+++++-+....|+++
T Consensus         5 ~gvav~~~g~i~VaD~~n~rV~vf   28 (28)
T PF01436_consen    5 HGVAVDSDGNIYVADSGNHRVQVF   28 (28)
T ss_dssp             EEEEEETTSEEEEEECCCTEEEEE
T ss_pred             cEEEEeCCCCEEEEECCCCEEEEC
Confidence            678888889888888888887764

For example, the repeat is found in a variety of enzymes of the copper type II, ascorbate-dependent monooxygenase family which catalyse the C terminus alpha-amidation of biological peptides []. In many it occurs in tandem arrays, for example in the ringfinger beta-box, coiled-coil (RBCC) eukaryotic growth regulators []. The 'Brain Tumor' protein (Brat) is one such growth regulator that contains a 6-bladed NHL-repeat beta-propeller [, ]. The NHL repeats are also found in serine/threonine protein kinase (STPK) in diverse range of pathogenic bacteria. These STPK are transmembrane receptors with a intracellular N-terminal kinase domain and extracellular C-terminal sensor domain. In the STPK, PknD, from Mycobacterium tuberculosis, the sensor domain forms a rigid, six-bladed b-propeller composed of NHL repeats with a flexible tether to the transmembrane domain.; GO: 0005515 protein binding; PDB: 3FVZ_A 3FW0_A 1RWL_A 1RWI_A 1Q7F_A.

>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]

Probab=85.84  E-value=26  Score=31.53  Aligned_cols=33  Identities=15%  Similarity=0.245  Sum_probs=27.0

Q ss_pred             CCCCeeEEEEecCCCcEEEEecCCCcEEEEeCCc
Q 021657          184 HSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEK  217 (309)
Q Consensus       184 ~~~~v~~~~~~~~~~~l~~~~~~dg~i~iwd~~~  217 (309)
                      ..+.+..+..+|+.++ +|--...|.|.+-+++.
T Consensus       215 ~~~~~~ki~VS~n~~~-laLyt~~G~i~~vs~D~  247 (829)
T KOG2280|consen  215 PNSSVVKISVSPNRRF-LALYTETGKIWVVSIDL  247 (829)
T ss_pred             CCceEEEEEEcCCcce-EEEEecCCcEEEEecch
Confidence            3466788999999997 57888899999988876

>TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein

Probab=85.34  E-value=18  Score=29.21  Aligned_cols=63  Identities=10%  Similarity=0.049  Sum_probs=35.0

Q ss_pred             cEEEEEcC-----CCeEEEEEcCCCCcceEEEeeccCCceeEEEeccCCCCeEEEEcCCCc----EEEEecCCC
Q 021657          105 QEFCSVGD-----DSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNS----VRMFDRRNL  169 (309)
Q Consensus       105 ~~l~s~~~-----dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~----i~i~d~~~~  169 (309)
                      .+++.|+.     ...+..||+.+.++.....+..... ....+..- ++.+++.|+.++.    +..||.++.
T Consensus       125 ~iYv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~~r-~~~~~~~~-~~~iYv~GG~~~~~~~~~~~yd~~~~  196 (323)
T TIGR03548       125 TLYVGGGNRNGKPSNKSYLFNLETQEWFELPDFPGEPR-VQPVCVKL-QNELYVFGGGSNIAYTDGYKYSPKKN  196 (323)
T ss_pred             EEEEEeCcCCCccCceEEEEcCCCCCeeECCCCCCCCC-CcceEEEE-CCEEEEEcCCCCccccceEEEecCCC
Confidence            66677664     2468888988777533322221111 11122222 6778888877643    467888763

Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat.

>KOG1983 consensus Tomosyn and related SNARE-interacting proteins [Intracellular trafficking, secretion, and vesicular transport]

Probab=85.10  E-value=23  Score=33.75  Aligned_cols=28  Identities=21%  Similarity=0.338  Sum_probs=25.0

Q ss_pred             EEEEECCCCCEEEEecCCCcEEEEeCCc
Q 021657           13 FALAMCPTEPYVLSGGKDKSVVLWSIQD   40 (309)
Q Consensus        13 ~~~~~~~~~~~l~t~~~dg~i~vwd~~~   40 (309)
                      ..++|+|.-.++|.+..+|.|+++-...
T Consensus        39 ~~~afD~~q~llai~t~tg~i~~yg~~~   66 (993)
T KOG1983|consen   39 SALAFDPTQGLLAIGTRTGAIKIYGQPG   66 (993)
T ss_pred             cceeeccccceEEEEEecccEEEecccc
Confidence            4789999999999999999999998654

>PLN00033 photosystem II stability/assembly factor; Provisional

Probab=84.98  E-value=22  Score=29.82  Aligned_cols=70  Identities=16%  Similarity=0.290  Sum_probs=41.8

Q ss_pred             ccCCceeEEEeccCCCCeEEEEcCCCcEEEEecCCCCCCCCCC-----ceeeecc--CCCCeeEEEEecCCCcEEEEecC
Q 021657          134 AHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGS-----PINKFEG--HSAAVLCVQWSPDKSSVFGSSAE  206 (309)
Q Consensus       134 ~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~-----~~~~~~~--~~~~v~~~~~~~~~~~l~~~~~~  206 (309)
                      .....++++.+.+ ++..++++ .+|.+.. ....      ++     .......  ....+..+.+.+++. ++ .++.
T Consensus       278 ~~~~~l~~v~~~~-dg~l~l~g-~~G~l~~-S~d~------G~~~~~~~f~~~~~~~~~~~l~~v~~~~d~~-~~-a~G~  346 (398)
T PLN00033        278 ASARRIQNMGWRA-DGGLWLLT-RGGGLYV-SKGT------GLTEEDFDFEEADIKSRGFGILDVGYRSKKE-AW-AAGG  346 (398)
T ss_pred             CCccceeeeeEcC-CCCEEEEe-CCceEEE-ecCC------CCcccccceeecccCCCCcceEEEEEcCCCc-EE-EEEC
Confidence            3456788999998 77777766 5566543 3322      22     2222221  123588899998887 45 4555


Q ss_pred             CCcEEEEe
Q 021657          207 DGLLNIWD  214 (309)
Q Consensus       207 dg~i~iwd  214 (309)
                      +|.+....
T Consensus       347 ~G~v~~s~  354 (398)
T PLN00033        347 SGILLRST  354 (398)
T ss_pred             CCcEEEeC
Confidence            78765543

>COG3823 Glutamine cyclotransferase [Posttranslational modification, protein turnover, chaperones]

Probab=83.32  E-value=17  Score=27.16  Aligned_cols=173  Identities=10%  Similarity=0.040  Sum_probs=0.0

Q ss_pred             CCCEEEEecCCCc--EEEEeCCccccccccCCccccccCCCCc---eeecCCCCCCCCcccCCCCCcCcccccccccCCe
Q 021657           20 TEPYVLSGGKDKS--VVLWSIQDHITSSATDPATAKSAGSSGS---IIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTV   94 (309)
Q Consensus        20 ~~~~l~t~~~dg~--i~vwd~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v   94 (309)
                      +|.++.+.+.-|.  |++||+.++...................   .......-.++....++..+.+.+..+. ..+.=
T Consensus        55 ~g~i~esTG~yg~S~ir~~~L~~gq~~~s~~l~~~~~FgEGit~~gd~~y~LTw~egvaf~~d~~t~~~lg~~~-y~GeG  133 (262)
T COG3823          55 DGHILESTGLYGFSKIRVSDLTTGQEIFSEKLAPDTVFGEGITKLGDYFYQLTWKEGVAFKYDADTLEELGRFS-YEGEG  133 (262)
T ss_pred             CCEEEEeccccccceeEEEeccCceEEEEeecCCccccccceeeccceEEEEEeccceeEEEChHHhhhhcccc-cCCcc


Q ss_pred             EEEEEecCCCcEEEEEcCCCeEEEEEcCCCCcceEEEeeccCCceeEE---EeccCCCCeEEEEcCCCcEEEEecCCCCC
Q 021657           95 EDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCV---DWNPLDDNLILTGSADNSVRMFDRRNLTS  171 (309)
Q Consensus        95 ~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~---~~~~~~~~~l~~~~~dg~i~i~d~~~~~~  171 (309)
                      +.++.....   |+.+....+++.-|..+..............+|..+   .|-  +|...|-.-.+..|-..|..+   
T Consensus       134 WgLt~d~~~---LimsdGsatL~frdP~tfa~~~~v~VT~~g~pv~~LNELE~V--dG~lyANVw~t~~I~rI~p~s---  205 (262)
T COG3823         134 WGLTSDDKN---LIMSDGSATLQFRDPKTFAELDTVQVTDDGVPVSKLNELEWV--DGELYANVWQTTRIARIDPDS---  205 (262)
T ss_pred             eeeecCCcc---eEeeCCceEEEecCHHHhhhcceEEEEECCeecccccceeee--ccEEEEeeeeecceEEEcCCC---


Q ss_pred             CCCCCceeeec------------cCCCCeeEEEEecCCCcEEEEe
Q 021657          172 NGVGSPINKFE------------GHSAAVLCVQWSPDKSSVFGSS  204 (309)
Q Consensus       172 ~~~~~~~~~~~------------~~~~~v~~~~~~~~~~~l~~~~  204 (309)
                         ++.+..+.            .+..-.+.|++.|++..++++|
T Consensus       206 ---GrV~~widlS~L~~~~~~~~~~~nvlNGIA~~~~~~r~~iTG  247 (262)
T COG3823         206 ---GRVVAWIDLSGLLKELNLDKSNDNVLNGIAHDPQQDRFLITG  247 (262)
T ss_pred             ---CcEEEEEEccCCchhcCccccccccccceeecCcCCeEEEec

>PF14779 BBS1: Ciliary BBSome complex subunit 1

Probab=83.31  E-value=16  Score=28.33  Aligned_cols=71  Identities=13%  Similarity=0.149  Sum_probs=46.6

Q ss_pred             CCceeEEEecc------CCCCeEEEEcCCCcEEEEecCCCCCCCCCCceeeeccCCCCeeEEEEec--C-CCcEEEEecC
Q 021657          136 DADLHCVDWNP------LDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWSP--D-KSSVFGSSAE  206 (309)
Q Consensus       136 ~~~v~~~~~~~------~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~-~~~l~~~~~~  206 (309)
                      ...|+||+--+      ..-..|+.|..+|.|.|.|...      ...+.++.-..-++ .+..+-  | ..+-++.++.
T Consensus       176 ~t~ITcm~tikk~~~d~~a~scLViGTE~~~i~iLd~~a------f~il~~~~lpsvPv-~i~~~G~~devdyRI~Va~R  248 (257)
T PF14779_consen  176 QTVITCMATIKKSSADEDAVSCLVIGTESGEIYILDPQA------FTILKQVQLPSVPV-FISVSGQYDEVDYRIVVACR  248 (257)
T ss_pred             CceeEEeeeecccccCCCCcceEEEEecCCeEEEECchh------heeEEEEecCCCce-EEEEEeeeeccceEEEEEeC
Confidence            45677776532      1235899999999999999987      66677766554444 232221  1 2333557888


Q ss_pred             CCcEEEE
Q 021657          207 DGLLNIW  213 (309)
Q Consensus       207 dg~i~iw  213 (309)
                      ||.|++.
T Consensus       249 dg~iy~i  255 (257)
T PF14779_consen  249 DGKIYTI  255 (257)
T ss_pred             CCEEEEE
Confidence            9988764

>PRK13684 Ycf48-like protein; Provisional

Probab=83.26  E-value=23  Score=28.83  Aligned_cols=108  Identities=13%  Similarity=0.183  Sum_probs=58.7

Q ss_pred             cCCeEEEEEecCCCcEEEEEcCCCeEEEEEcCCCCcceEEEeeccCCceeEEEeccCCCCeEEEEcCCCcEEEEecCCCC
Q 021657           91 EDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLT  170 (309)
Q Consensus        91 ~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~  170 (309)
                      ...+.++.+.|++ .++++ +..|.+..- ...+...-..........++++.+.+ ++..++++ ..|.+++=....  
T Consensus       172 ~g~~~~i~~~~~g-~~v~~-g~~G~i~~s-~~~gg~tW~~~~~~~~~~l~~i~~~~-~g~~~~vg-~~G~~~~~s~d~--  244 (334)
T PRK13684        172 AGVVRNLRRSPDG-KYVAV-SSRGNFYST-WEPGQTAWTPHQRNSSRRLQSMGFQP-DGNLWMLA-RGGQIRFNDPDD--  244 (334)
T ss_pred             cceEEEEEECCCC-eEEEE-eCCceEEEE-cCCCCCeEEEeeCCCcccceeeeEcC-CCCEEEEe-cCCEEEEccCCC--
Confidence            3457888888876 55544 455655431 11221111222233456789999999 77776665 567665322222  


Q ss_pred             CCCCCCceeeecc----CCCCeeEEEEecCCCcEEEEecCCCcEE
Q 021657          171 SNGVGSPINKFEG----HSAAVLCVQWSPDKSSVFGSSAEDGLLN  211 (309)
Q Consensus       171 ~~~~~~~~~~~~~----~~~~v~~~~~~~~~~~l~~~~~~dg~i~  211 (309)
                          +..-.....    ....+..+.+.+++. ++ .++.+|.+.
T Consensus       245 ----G~sW~~~~~~~~~~~~~l~~v~~~~~~~-~~-~~G~~G~v~  283 (334)
T PRK13684        245 ----LESWSKPIIPEITNGYGYLDLAYRTPGE-IW-AGGGNGTLL  283 (334)
T ss_pred             ----CCccccccCCccccccceeeEEEcCCCC-EE-EEcCCCeEE
Confidence                221111111    123578889999877 45 445577654

>PF11715 Nup160: Nucleoporin Nup120/160; InterPro: IPR021717 Nup120 is conserved from fungi to plants to humans, and is homologous with the Nup160 of vertebrates

Probab=83.24  E-value=2.3  Score=37.30  Aligned_cols=33  Identities=15%  Similarity=0.464  Sum_probs=26.1

Q ss_pred             ceEEEEECC----CCCEEEEecCCCcEEEEeCCcccc
Q 021657           11 AEFALAMCP----TEPYVLSGGKDKSVVLWSIQDHIT   43 (309)
Q Consensus        11 ~V~~~~~~~----~~~~l~t~~~dg~i~vwd~~~~~~   43 (309)
                      .+..+++++    +..+|++-+.|+++|+||+.++.+
T Consensus       216 ~~~~~~~~~~~~~~~~~l~tl~~D~~LRiW~l~t~~~  252 (547)
T PF11715_consen  216 VAASLAVSSSEINDDTFLFTLSRDHTLRIWSLETGQC  252 (547)
T ss_dssp             -EEEEEE-----ETTTEEEEEETTSEEEEEETTTTCE
T ss_pred             ccceEEEecceeCCCCEEEEEeCCCeEEEEECCCCeE
Confidence            556777777    678999999999999999998865

The nuclear core complex, or NPC, mediates macromolecular transport across the nuclear envelope. Deletion of the NUP120 gene causes clustering of NPCs at one side of the nuclear envelope, moderate nucleolar fragmentation and slower cell growth []. The vertebrate NPC is estimated to contain between 30 and 60 different proteins. most of which are not known. Two important ones in creating the nucleoporin basket are Nup98 and Nup153, and Nup120, in conjunction with Nup 133, interacts with these two and itself plays a role in mRNA export []. Nup160, Nup133, Nup96, and Nup107 are all targets of phosphorylation. The phosphorylation sites are clustered mainly at the N-terminal regions of these proteins, which are predicted to be natively disordered. The entire Nup107-160 subcomplex is stable throughout the cell cycle, thus it seems unlikely that phosphorylation affects interactions within the Nup107-160 subcomplex, but rather that it regulates the association of the subcomplex with the NPC and other proteins []. ; PDB: 3F7F_D 3H7N_D 3HXR_A.

>PF03088 Str_synth: Strictosidine synthase; InterPro: IPR018119 This entry represents a conserved region found in strictosidine synthase (4

Probab=83.17  E-value=4.9  Score=25.22  Aligned_cols=54  Identities=15%  Similarity=0.057  Sum_probs=33.4

Q ss_pred             EcCCCcEEEEecCCCCCCCCCCceeeeccCCCCeeEEEEecCCCcEEEEecCCCcEEEEeC
Q 021657          155 GSADNSVRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDY  215 (309)
Q Consensus       155 ~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~dg~i~iwd~  215 (309)
                      +..+|.+.-||..+      ++...-+. .-...+.|++++|+.+++++-+.-..|.=|-+
T Consensus        33 ~~~~GRll~ydp~t------~~~~vl~~-~L~fpNGVals~d~~~vlv~Et~~~Ri~rywl   86 (89)
T PF03088_consen   33 GRPTGRLLRYDPST------KETTVLLD-GLYFPNGVALSPDESFVLVAETGRYRILRYWL   86 (89)
T ss_dssp             T---EEEEEEETTT------TEEEEEEE-EESSEEEEEE-TTSSEEEEEEGGGTEEEEEES
T ss_pred             CCCCcCEEEEECCC------CeEEEehh-CCCccCeEEEcCCCCEEEEEeccCceEEEEEE
Confidence            34567888899887      44333333 33467899999999988877665555544433

3.3.2 from EC), a key enzyme in alkaloid biosynthesis. It catalyses the Pictet-Spengler stereospecific condensation of tryptamine with secologanin to form strictosidine []. The structure of the native enzyme from the Indian medicinal plant Rauvolfia serpentina (Serpentwood) (Devilpepper) represents the first example of a six-bladed four-stranded beta-propeller fold from the plant kingdom [].; GO: 0016844 strictosidine synthase activity, 0009058 biosynthetic process; PDB: 2FPB_A 2V91_B 2FP8_A 3V1S_B 2FPC_A 2VAQ_A 2FP9_B.

>smart00564 PQQ beta-propeller repeat

Probab=82.99  E-value=3.8  Score=19.60  Aligned_cols=26  Identities=23%  Similarity=0.450  Sum_probs=20.2

Q ss_pred             CCeEEEEcCCCcEEEEecCCCCCCCCCCceee
Q 021657          149 DNLILTGSADNSVRMFDRRNLTSNGVGSPINK  180 (309)
Q Consensus       149 ~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~  180 (309)
                      +..++.++.+|.+..+|.++      ++.+.+
T Consensus         6 ~~~v~~~~~~g~l~a~d~~~------G~~~W~   31 (33)
T smart00564        6 DGTVYVGSTDGTLYALDAKT------GEILWT   31 (33)
T ss_pred             CCEEEEEcCCCEEEEEEccc------CcEEEE
Confidence            34677788899999999988      766654

Beta-propeller repeat occurring in enzymes with pyrrolo-quinoline quinone (PQQ) as cofactor, in Ire1p-like Ser/Thr kinases, and in prokaryotic dehydrogenases.

>smart00036 CNH Domain found in NIK1-like kinases, mouse citron and yeast ROM1, ROM2

Probab=82.73  E-value=23  Score=28.38  Aligned_cols=63  Identities=10%  Similarity=0.095  Sum_probs=42.8

Q ss_pred             CeEEEEcCCCcEEEEecCCCCCCCCCCceeeeccCCCCeeEEEEecCCCcEEEEecCCCcEEEEeCCccc
Q 021657          150 NLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVG  219 (309)
Q Consensus       150 ~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~dg~i~iwd~~~~~  219 (309)
                      ++++.|+.+|. .+.++...     ......+- +...|+++...+....|++.++....++.+++....
T Consensus        14 ~~lL~GTe~Gl-y~~~~~~~-----~~~~~kl~-~~~~v~q~~v~~~~~lLi~Lsgk~~~L~~~~L~~L~   76 (302)
T smart00036       14 KWLLVGTEEGL-YVLNISDQ-----PGTLEKLI-GRRSVTQIWVLEENNVLLMISGKKPQLYSHPLSALV   76 (302)
T ss_pred             cEEEEEeCCce-EEEEcccC-----CCCeEEec-CcCceEEEEEEhhhCEEEEEeCCcceEEEEEHHHhh
Confidence            58999999884 45555431     12222232 356899999999888777666666679999996644

Unpublished observations.

>TIGR03606 non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH family

Probab=82.58  E-value=30  Score=29.57  Aligned_cols=58  Identities=16%  Similarity=0.215  Sum_probs=37.6

Q ss_pred             cCCceeEEEeccCCCCeEEEEcCCCcEEEEecCCCCCCCCCCceeeec-----cCCCCeeEEEEecCC
Q 021657          135 HDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFE-----GHSAAVLCVQWSPDK  197 (309)
Q Consensus       135 ~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~-----~~~~~v~~~~~~~~~  197 (309)
                      .-...+.|+|.| ++++|++--..|.|++++.....    ...+..+.     ........|+++|+-
T Consensus        28 GL~~Pw~maflP-DG~llVtER~~G~I~~v~~~~~~----~~~~~~l~~v~~~~ge~GLlglal~PdF   90 (454)
T TIGR03606        28 GLNKPWALLWGP-DNQLWVTERATGKILRVNPETGE----VKVVFTLPEIVNDAQHNGLLGLALHPDF   90 (454)
T ss_pred             CCCCceEEEEcC-CCeEEEEEecCCEEEEEeCCCCc----eeeeecCCceeccCCCCceeeEEECCCc
Confidence            345678999999 88777765446999999765421    11221111     135668899999874

PQQ, or pyrroloquinoline-quinone, serves as a cofactor for a number of sugar and alcohol dehydrogenases in a limited number of bacterial species. Most characterized PQQ-dependent enzymes have multiple repeats of a sequence region described by pfam01011 (PQQ enzyme repeat), but this protein family in unusual in lacking that repeat. Below the noise cutoff are related proteins mostly from species that lack PQQ biosynthesis.

>KOG3616 consensus Selective LIM binding factor [Transcription]

Probab=80.82  E-value=5.2  Score=35.69  Aligned_cols=70  Identities=13%  Similarity=0.148  Sum_probs=46.2

Q ss_pred             CCceeEEEeccCCCCeEEEEcCCCcEEEEecCCCCCCCCCCceeeeccCCCCeeEEEEecCCCcEEEEecCCCcEEEEeC
Q 021657          136 DADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDY  215 (309)
Q Consensus       136 ~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~dg~i~iwd~  215 (309)
                      ...++++.-+| .++-++.++.||.|++|+.-...    ...+.+..   .+-..+.|...|  | ++...|..+.-|.-
T Consensus        14 ~e~~~aiqshp-~~~s~v~~~~d~si~lfn~~~r~----qski~~~~---~p~~nlv~tnhg--l-~~~tsdrr~la~~~   82 (1636)
T KOG3616|consen   14 DEFTTAIQSHP-GGQSFVLAHQDGSIILFNFIPRR----QSKICEEA---KPKENLVFTNHG--L-VTATSDRRALAWKE   82 (1636)
T ss_pred             cceeeeeeecC-CCceEEEEecCCcEEEEeecccc----hhhhhhhc---CCccceeeeccc--e-EEEeccchhheeec
Confidence            45577888899 99999999999999999976521    11233322   233456676666  3 35556777766754


Q ss_pred             C
Q 021657          216 E  216 (309)
Q Consensus       216 ~  216 (309)
                      +
T Consensus        83 d   83 (1636)
T KOG3616|consen   83 D   83 (1636)
T ss_pred             c
Confidence            4

>PF13449 Phytase-like: Esterase-like activity of phytase

Probab=80.60  E-value=29  Score=28.16  Aligned_cols=170  Identities=12%  Similarity=0.108  Sum_probs=86.5

Q ss_pred             CeEEEEEecCCCcEEEEEcCC------CeEEEEEcCCCCcceE----E---------EeeccCCceeEEEeccCCCCeEE
Q 021657           93 TVEDVTFCPSSAQEFCSVGDD------SCLILWDARVGTSPVI----K---------VEKAHDADLHCVDWNPLDDNLIL  153 (309)
Q Consensus        93 ~v~~~~~~~~~~~~l~s~~~d------g~i~iwd~~~~~~~~~----~---------~~~~~~~~v~~~~~~~~~~~~l~  153 (309)
                      ...+|++.+++ .++++.-.+      ..|..++.. ++....    .         .........-+|+++| +++.|+
T Consensus        86 D~Egi~~~~~g-~~~is~E~~~~~~~~p~I~~~~~~-G~~~~~~~vP~~~~~~~~~~~~~~~N~G~E~la~~~-dG~~l~  162 (326)
T PF13449_consen   86 DPEGIAVPPDG-SFWISSEGGRTGGIPPRIRRFDLD-GRVIRRFPVPAAFLPDANGTSGRRNNRGFEGLAVSP-DGRTLF  162 (326)
T ss_pred             ChhHeEEecCC-CEEEEeCCccCCCCCCEEEEECCC-CcccceEccccccccccCccccccCCCCeEEEEECC-CCCEEE
Confidence            45677886666 666666566      678888865 432101    1         0112345688999999 888666


Q ss_pred             EEcCC-----C--c-------EEEEecCCCCC-CCCCCceeeecc-----CCCCeeEEEEecCCCcEEEEec----CCCc
Q 021657          154 TGSAD-----N--S-------VRMFDRRNLTS-NGVGSPINKFEG-----HSAAVLCVQWSPDKSSVFGSSA----EDGL  209 (309)
Q Consensus       154 ~~~~d-----g--~-------i~i~d~~~~~~-~~~~~~~~~~~~-----~~~~v~~~~~~~~~~~l~~~~~----~dg~  209 (309)
                      ++...     +  .       ++++....... ....+....+..     ....+..+.+-++++.++.--+    ....
T Consensus       163 ~~~E~~l~~d~~~~~~~~~~~~ri~~~d~~~~~~~~~~~~y~ld~~~~~~~~~~isd~~al~d~~lLvLER~~~~~~~~~  242 (326)
T PF13449_consen  163 AAMESPLKQDGPRANPDNGSPLRILRYDPKTPGEPVAEYAYPLDPPPTAPGDNGISDIAALPDGRLLVLERDFSPGTGNY  242 (326)
T ss_pred             EEECccccCCCcccccccCceEEEEEecCCCCCccceEEEEeCCccccccCCCCceeEEEECCCcEEEEEccCCCCccce
Confidence            55332     2  1       55554443110 000122223332     3467889999999985432222    2345


Q ss_pred             EEEEeCCcccc--cccC--CC--CCcCCCCceeeeecC---CCcceeeEEEcc--CCCeEEEEecCC
Q 021657          210 LNIWDYEKVGK--KVEQ--GP--RTTNYPAGLFFQHAG---HRDKVVDFHWNA--SDPWTVVSVSDD  265 (309)
Q Consensus       210 i~iwd~~~~~~--~~~~--~~--~~~~~~~~~~~~~~~---~~~~v~~~~~~~--~~~~~~~s~s~d  265 (309)
                      ++||.+.....  ....  ..  .........+..+..   ....+-.|+|.|  ++...++..|+|
T Consensus       243 ~ri~~v~l~~at~~~~~~~l~~~~~~~~~k~ll~d~~~~g~~~dn~EGma~~p~~~g~~~l~lvsDn  309 (326)
T PF13449_consen  243 KRIYRVDLSDATDVPGIESLEGADIKPVKKELLFDLSPLGLPIDNFEGMAVGPRLDGRRTLYLVSDN  309 (326)
T ss_pred             EEEEEEEcccccccccccccccccccccccccccccccccCccCceeeEEEeeccCCCEEEEEEECC
Confidence            66666553211  1000  00  000111222222222   256678899976  566666666665

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	309
3gfc_A	425	Crystal Structure Of Histone-Binding Protein Rbbp4		6e-31
3cfs_B	414	Structural Basis Of The Interaction Of Rbap46RBAP48		5e-30
2xyi_A	430	Crystal Structure Of Nurf55 In Complex With A H4 Pe		7e-29
3c99_A	432	Structural Basis Of Histone H4 Recognition By P55 L		7e-29
2yba_A	422	Crystal Structure Of Nurf55 In Complex With Histone		1e-28
3cfv_B	414	Structural Basis Of The Interaction Of Rbap46RBAP48		2e-28
2gnq_A	336	Structure Of Wdr5 Length = 336		2e-09
3n0e_A	315	Crystal Structure Of Wdr5 Mutant (W330y) Length = 3		2e-09
2xl2_A	334	Wdr5 In Complex With An Rbbp5 Peptide Recruited To		2e-09
2h13_A	317	Crystal Structure Of Wdr5HISTONE H3 COMPLEX Length		2e-09
3n0d_A	315	Crystal Structure Of Wdr5 Mutant (W330f) Length = 3		2e-09
2h9l_A	329	Wdr5delta23 Length = 329		2e-09
3psl_A	318	Fine-Tuning The Stimulation Of Mll1 Methyltransfera		2e-09
4a7j_A	318	Symmetric Dimethylation Of H3 Arginine 2 Is A Novel		2e-09
2h9m_A	313	Wdr5 In Complex With Unmodified H3k4 Peptide Length		2e-09
3mxx_A	315	Crystal Structure Of Wdr5 Mutant (S62a) Length = 31		3e-09
3emh_A	318	Structural Basis Of Wdr5-Mll Interaction Length = 3		3e-09
3smr_A	312	Crystal Structure Of Human Wd Repeat Domain 5 With		3e-09
2g9a_A	311	Structural Basis For The Specific Recognition Of Me		3e-09
2g99_A	308	Structural Basis For The Specific Recognition Of Me		3e-09
2h68_A	312	Histone H3 Recognition And Presentation By The Wdr5		3e-09
2cnx_A	315	Wdr5 And Histone H3 Lysine 4 Dimethyl Complex At 2.		3e-09
2co0_A	315	Wdr5 And Unmodified Histone H3 Complex At 2.25 Angs		3e-09
2ymu_A	577	Structure Of A Highly Repetitive Propeller Structur		9e-09
2ymu_A	577	Structure Of A Highly Repetitive Propeller Structur		3e-06
3iz6_a	380	Localization Of The Small Subunit Ribosomal Protein		2e-08
1p22_A	435	Structure Of A Beta-Trcp1-Skp1-Beta-Catenin Complex		3e-07
3zey_7	318	High-resolution Cryo-electron Microscopy Structure		5e-07
2yno_A	310	Yeast Betaprime Cop 1-304h6 Length = 310		5e-07
2ynn_A	304	Yeast Betaprime Cop 1-304 With Ktktn Motif Length =		5e-07
1erj_A	393	Crystal Structure Of The C-Terminal Wd40 Domain Of		6e-07
2ynp_A	604	Yeast Betaprime Cop 1-604 With Ktktn Motif Length =		8e-07
2xzm_R	343	Crystal Structure Of The Eukaryotic 40s Ribosomal S		9e-07
3mkq_A	814	Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subco		1e-06
4i79_A	399	Crystal Structure Of Human Nup43 Length = 399		3e-06
4a11_B	408	Structure Of The Hsddb1-Hscsa Complex Length = 408		6e-06
4a11_B	408	Structure Of The Hsddb1-Hscsa Complex Length = 408		2e-04
4gqb_B	344	Crystal Structure Of The Human Prmt5:mep50 Complex		1e-05
2pm9_A	416	Crystal Structure Of Yeast Sec1331 VERTEX ELEMENT O		2e-05
2aq5_A	402	Crystal Structure Of Murine Coronin-1 Length = 402		3e-05
1nr0_A	611	Two Seven-Bladed Beta-Propeller Domains Revealed By		3e-05
2pm6_B	297	Crystal Structure Of Yeast Sec1331 EDGE ELEMENT OF		6e-05
3jrp_A	379	Sec13 With Nup145c (Aa109-179) Insertion Blade Leng		8e-05
2zkq_a	317	Structure Of A Mammalian Ribosomal 40s Subunit With		9e-05
2zkq_a	317	Structure Of A Mammalian Ribosomal 40s Subunit With		3e-04
4aow_A	340	Crystal Structure Of The Human Rack1 Protein At A R		9e-05
4aow_A	340	Crystal Structure Of The Human Rack1 Protein At A R		3e-04
2pm9_B	297	Crystal Structure Of Yeast Sec1331 VERTEX ELEMENT O		1e-04
2b4e_A	402	Crystal Structure Of Murine Coronin-1: Monoclinic F		1e-04
3fm0_A	345	Crystal Structure Of Wd40 Protein Ciao1 Length = 34		1e-04
4aez_A	401	Crystal Structure Of Mitotic Checkpoint Complex Len		2e-04
3sfz_A	1249	Crystal Structure Of Full-Length Murine Apaf-1 Leng		2e-04
3shf_A	1256	Crystal Structure Of The R265s Mutant Of Full-Lengt		2e-04
3jro_A	753	Nup84-Nup145c-Sec13 Edge Element Of The Npc Lattice		2e-04
2ovp_B	445	Structure Of The Skp1-Fbw7 Complex Length = 445		3e-04
4g56_B	357	Crystal Structure Of Full Length Prmt5/mep50 Comple		3e-04
2pm7_B	297	Crystal Structure Of Yeast Sec1331 EDGE ELEMENT OF		7e-04

>pdb|3GFC|A Chain A, Crystal Structure Of Histone-Binding Protein Rbbp4 Length = 425

Iteration: 1
 Score =  130 bits (328), Expect = 6e-31,   Method: Compositional matrix adjust.
 Identities = 75/215 (34%), Positives = 111/215 (51%), Gaps = 16/215 (7%)
Query: 77  DGPSVGPRGIYNGHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVG-TSPVIKVEKAH 135
           +G  V  + I+ GH   VEDV++       F SV DD  L++WD R   TS       AH
Sbjct: 213 EGKVVDAKTIFTGHTAVVEDVSWHLLHESLFGSVADDQKLMIWDTRSNNTSKPSHSVDAH 272
Query: 136 DADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWSP 195
            A+++C+ +NP  + ++ TGSAD +V ++D RNL        ++ FE H   +  VQWSP
Sbjct: 273 TAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLK-----LHSFESHKDEIFQVQWSP 327
Query: 196 DKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPR-TTNYPAGLFFQHAGHRDKVVDFHWNAS 254
              ++  SS  D  LN+WD  K+G+  EQ P    + P  L F H GH  K+ DF WN +
Sbjct: 328 HNETILASSGTDRRLNVWDLSKIGE--EQSPEDAEDGPPELLFIHGGHTAKISDFSWNPN 385
Query: 255 DPWXXXXXXXXXXXXXXXXXLQIWRMSDLIYRPQD 289
           +PW                 +Q+W+M++ IY  +D
Sbjct: 386 EPW-------VICSVSEDNIMQVWQMAENIYNDED 413

>pdb|3CFS|B Chain B, Structural Basis Of The Interaction Of Rbap46RBAP48 WITH Histone H4 Length = 414

Iteration: 1
 Score =  128 bits (321), Expect = 5e-30,   Method: Compositional matrix adjust.
 Identities = 73/217 (33%), Positives = 109/217 (50%), Gaps = 14/217 (6%)
Query: 70  DGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGT-SPV 128
           D N    +G  V  + I+ GH   VEDV +       F SV DD  L++WD R  T S  
Sbjct: 208 DINAGPKEGKIVDAKAIFTGHSAVVEDVAWHLLHESLFGSVADDQKLMIWDTRSNTTSKP 267
Query: 129 IKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGHSAAV 188
             +  AH A+++C+ +NP  + ++ TGSAD +V ++D RNL        ++ FE H   +
Sbjct: 268 SHLVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLK-----LHTFESHKDEI 322
Query: 189 LCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKVVD 248
             V WSP   ++  SS  D  LN+WD  K+G++ +      + P  L F H GH  K+ D
Sbjct: 323 FQVHWSPHNETILASSGTDRRLNVWDLSKIGEE-QSAEDAEDGPPELLFIHGGHTAKISD 381
Query: 249 FHWNASDPWXXXXXXXXXXXXXXXXXLQIWRMSDLIY 285
           F WN ++PW                 +QIW+M++ IY
Sbjct: 382 FSWNPNEPW-------VICSVSEDNIMQIWQMAENIY 411

>pdb|2XYI|A Chain A, Crystal Structure Of Nurf55 In Complex With A H4 Peptide Length = 430

Iteration: 1
 Score =  124 bits (311), Expect = 7e-29,   Method: Compositional matrix adjust.
 Identities = 83/288 (28%), Positives = 129/288 (44%), Gaps = 49/288 (17%)
Query: 4   LTGHQDNAEFALAMCPT-EPYVLSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSII 62
           L GHQ    + L+  P    Y+LS   D ++ LW I           AT K         
Sbjct: 177 LRGHQKEG-YGLSWNPNLNGYLLSASDDHTICLWDIN----------ATPK--------- 216
Query: 63  KQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDAR 122
                         +   +  + I+ GH   VEDV +       F SV DD  L++WD R
Sbjct: 217 --------------EHRVIDAKNIFTGHTAVVEDVAWHLLHESLFGSVADDQKLMIWDTR 262
Query: 123 VG-TSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKF 181
              TS       AH A+++C+ +NP  + ++ TGSAD +V ++D RNL        ++ F
Sbjct: 263 NNNTSKPSHTVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLK-----LHSF 317
Query: 182 EGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAG 241
           E H   +  VQWSP   ++  SS  D  L++WD  K+G++ +      + P  L F H G
Sbjct: 318 ESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEE-QSTEDAEDGPPELLFIHGG 376
Query: 242 HRDKVVDFHWNASDPWXXXXXXXXXXXXXXXXXLQIWRMSDLIYRPQD 289
           H  K+ DF WN ++PW                 +Q+W+M++ +Y  ++
Sbjct: 377 HTAKISDFSWNPNEPW-------IICSVSEDNIMQVWQMAENVYNDEE 417

>pdb|3C99|A Chain A, Structural Basis Of Histone H4 Recognition By P55 Length = 432

Iteration: 1
 Score =  124 bits (311), Expect = 7e-29,   Method: Compositional matrix adjust.
 Identities = 83/288 (28%), Positives = 129/288 (44%), Gaps = 49/288 (17%)
Query: 4   LTGHQDNAEFALAMCPT-EPYVLSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSII 62
           L GHQ    + L+  P    Y+LS   D ++ LW I           AT K         
Sbjct: 179 LRGHQKEG-YGLSWNPNLNGYLLSASDDHTICLWDIN----------ATPK--------- 218
Query: 63  KQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDAR 122
                         +   +  + I+ GH   VEDV +       F SV DD  L++WD R
Sbjct: 219 --------------EHRVIDAKNIFTGHTAVVEDVAWHLLHESLFGSVADDQKLMIWDTR 264
Query: 123 VG-TSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKF 181
              TS       AH A+++C+ +NP  + ++ TGSAD +V ++D RNL        ++ F
Sbjct: 265 NNNTSKPSHTVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLK-----LHSF 319
Query: 182 EGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAG 241
           E H   +  VQWSP   ++  SS  D  L++WD  K+G++ +      + P  L F H G
Sbjct: 320 ESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEE-QSTEDAEDGPPELLFIHGG 378
Query: 242 HRDKVVDFHWNASDPWXXXXXXXXXXXXXXXXXLQIWRMSDLIYRPQD 289
           H  K+ DF WN ++PW                 +Q+W+M++ +Y  ++
Sbjct: 379 HTAKISDFSWNPNEPW-------IICSVSEDNIMQVWQMAENVYNDEE 419

>pdb|2YBA|A Chain A, Crystal Structure Of Nurf55 In Complex With Histone H3 Length = 422

Iteration: 1
 Score =  123 bits (309), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 83/288 (28%), Positives = 129/288 (44%), Gaps = 49/288 (17%)
Query: 4   LTGHQDNAEFALAMCPT-EPYVLSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSII 62
           L GHQ    + L+  P    Y+LS   D ++ LW I           AT K         
Sbjct: 181 LRGHQKEG-YGLSWNPNLNGYLLSASDDHTICLWDIN----------ATPK--------- 220
Query: 63  KQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDAR 122
                         +   +  + I+ GH   VEDV +       F SV DD  L++WD R
Sbjct: 221 --------------EHRVIDAKNIFTGHTAVVEDVAWHLLHESLFGSVADDQKLMIWDTR 266
Query: 123 VG-TSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKF 181
              TS       AH A+++C+ +NP  + ++ TGSAD +V ++D RNL        ++ F
Sbjct: 267 NNNTSKPSHTVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLK-----LHSF 321
Query: 182 EGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAG 241
           E H   +  VQWSP   ++  SS  D  L++WD  K+G++ +      + P  L F H G
Sbjct: 322 ESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEE-QSTEDAEDGPPELLFIHGG 380
Query: 242 HRDKVVDFHWNASDPWXXXXXXXXXXXXXXXXXLQIWRMSDLIYRPQD 289
           H  K+ DF WN ++PW                 +Q+W+M++ +Y  ++
Sbjct: 381 HTAKISDFSWNPNEPW-------IICSVSEDNIMQVWQMAENVYNDEE 421

>pdb|3CFV|B Chain B, Structural Basis Of The Interaction Of Rbap46RBAP48 WITH Histone H4 Length = 414

Iteration: 1
 Score =  122 bits (307), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 73/217 (33%), Positives = 107/217 (49%), Gaps = 14/217 (6%)
Query: 70  DGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGT-SPV 128
           D N    +G  V  + I+ GH   VEDV +       F SV DD  L +WD R  T S  
Sbjct: 208 DINAGPKEGKIVDAKAIFTGHSAVVEDVAWHLLHESLFGSVADDQKLXIWDTRSNTTSKP 267
Query: 129 IKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGHSAAV 188
             +  AH A+++C+ +NP  + ++ TGSAD +V ++D RNL        ++ FE H   +
Sbjct: 268 SHLVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLK-----LHTFESHKDEI 322
Query: 189 LCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKVVD 248
             V WSP   ++  SS  D  LN+WD  K+G++ +      + P  L F H GH  K+ D
Sbjct: 323 FQVHWSPHNETILASSGTDRRLNVWDLSKIGEE-QSAEDAEDGPPELLFIHGGHTAKISD 381
Query: 249 FHWNASDPWXXXXXXXXXXXXXXXXXLQIWRMSDLIY 285
           F WN ++PW                  QIW+ ++ IY
Sbjct: 382 FSWNPNEPWVICSVSEDNIX-------QIWQXAENIY 411

>pdb|2GNQ|A Chain A, Structure Of Wdr5 Length = 336

Iteration: 1
 Score = 59.7 bits (143), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 43/127 (33%), Positives = 64/127 (50%), Gaps = 11/127 (8%)
Query: 88  NGHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPL 147
           +GH+  + DV +  S +    S  DD  L +WD  V +   +K  K H   + C ++NP 
Sbjct: 86  SGHKLGISDVAW-SSDSNLLVSASDDKTLKIWD--VSSGKCLKTLKGHSNYVFCCNFNP- 141
Query: 148 DDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAED 207
             NLI++GS D SVR++D +       G  +     HS  V  V ++ D  S+  SS+ D
Sbjct: 142 QSNLIVSGSFDESVRIWDVK------TGKCLKTLPAHSDPVSAVHFNRD-GSLIVSSSYD 194
Query: 208 GLLNIWD 214
           GL  IWD
Sbjct: 195 GLCRIWD 201

>pdb|3N0E|A Chain A, Crystal Structure Of Wdr5 Mutant (W330y) Length = 315

Iteration: 1
 Score = 59.7 bits (143), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 43/127 (33%), Positives = 64/127 (50%), Gaps = 11/127 (8%)
Query: 88  NGHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPL 147
           +GH+  + DV +  S +    S  DD  L +WD  V +   +K  K H   + C ++NP 
Sbjct: 65  SGHKLGISDVAW-SSDSNLLVSASDDKTLKIWD--VSSGKCLKTLKGHSNYVFCCNFNP- 120
Query: 148 DDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAED 207
             NLI++GS D SVR++D +       G  +     HS  V  V ++ D S +  SS+ D
Sbjct: 121 QSNLIVSGSFDESVRIWDVK------TGKCLKTLPAHSDPVSAVHFNRDGSLIV-SSSYD 173
Query: 208 GLLNIWD 214
           GL  IWD
Sbjct: 174 GLCRIWD 180

>pdb|2XL2|A Chain A, Wdr5 In Complex With An Rbbp5 Peptide Recruited To Novel Site Length = 334

Iteration: 1
 Score = 59.7 bits (143), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 43/127 (33%), Positives = 64/127 (50%), Gaps = 11/127 (8%)
Query: 88  NGHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPL 147
           +GH+  + DV +  S +    S  DD  L +WD  V +   +K  K H   + C ++NP 
Sbjct: 84  SGHKLGISDVAW-SSDSNLLVSASDDKTLKIWD--VSSGKCLKTLKGHSNYVFCCNFNP- 139
Query: 148 DDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAED 207
             NLI++GS D SVR++D +       G  +     HS  V  V ++ D  S+  SS+ D
Sbjct: 140 QSNLIVSGSFDESVRIWDVK------TGKCLKTLPAHSDPVSAVHFNRD-GSLIVSSSYD 192
Query: 208 GLLNIWD 214
           GL  IWD
Sbjct: 193 GLCRIWD 199

>pdb|2H13|A Chain A, Crystal Structure Of Wdr5HISTONE H3 COMPLEX Length = 317

Iteration: 1
 Score = 59.7 bits (143), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 43/127 (33%), Positives = 64/127 (50%), Gaps = 11/127 (8%)
Query: 88  NGHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPL 147
           +GH+  + DV +  S +    S  DD  L +WD  V +   +K  K H   + C ++NP 
Sbjct: 67  SGHKLGISDVAW-SSDSNLLVSASDDKTLKIWD--VSSGKCLKTLKGHSNYVFCCNFNP- 122
Query: 148 DDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAED 207
             NLI++GS D SVR++D +       G  +     HS  V  V ++ D S +  SS+ D
Sbjct: 123 QSNLIVSGSFDESVRIWDVK------TGKCLKTLPAHSDPVSAVHFNRDGSLIV-SSSYD 175
Query: 208 GLLNIWD 214
           GL  IWD
Sbjct: 176 GLCRIWD 182

>pdb|3N0D|A Chain A, Crystal Structure Of Wdr5 Mutant (W330f) Length = 315

Iteration: 1
 Score = 59.3 bits (142), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 43/127 (33%), Positives = 64/127 (50%), Gaps = 11/127 (8%)
Query: 88  NGHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPL 147
           +GH+  + DV +  S +    S  DD  L +WD  V +   +K  K H   + C ++NP 
Sbjct: 65  SGHKLGISDVAW-SSDSNLLVSASDDKTLKIWD--VSSGKCLKTLKGHSNYVFCCNFNP- 120
Query: 148 DDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAED 207
             NLI++GS D SVR++D +       G  +     HS  V  V ++ D S +  SS+ D
Sbjct: 121 QSNLIVSGSFDESVRIWDVK------TGKCLKTLPAHSDPVSAVHFNRDGSLIV-SSSYD 173
Query: 208 GLLNIWD 214
           GL  IWD
Sbjct: 174 GLCRIWD 180

>pdb|2H9L|A Chain A, Wdr5delta23 Length = 329

Iteration: 1
 Score = 59.3 bits (142), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 43/127 (33%), Positives = 64/127 (50%), Gaps = 11/127 (8%)
Query: 88  NGHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPL 147
           +GH+  + DV +  S +    S  DD  L +WD  V +   +K  K H   + C ++NP 
Sbjct: 79  SGHKLGISDVAW-SSDSNLLVSASDDKTLKIWD--VSSGKCLKTLKGHSNYVFCCNFNP- 134
Query: 148 DDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAED 207
             NLI++GS D SVR++D +       G  +     HS  V  V ++ D S +  SS+ D
Sbjct: 135 QSNLIVSGSFDESVRIWDVK------TGKCLKTLPAHSDPVSAVHFNRDGSLIV-SSSYD 187
Query: 208 GLLNIWD 214
           GL  IWD
Sbjct: 188 GLCRIWD 194

>pdb|3PSL|A Chain A, Fine-Tuning The Stimulation Of Mll1 Methyltransferase Activity By A Histone H3 Based Peptide Mimetic Length = 318

Iteration: 1
 Score = 59.3 bits (142), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 43/127 (33%), Positives = 64/127 (50%), Gaps = 11/127 (8%)
Query: 88  NGHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPL 147
           +GH+  + DV +  S +    S  DD  L +WD  V +   +K  K H   + C ++NP 
Sbjct: 68  SGHKLGISDVAW-SSDSNLLVSASDDKTLKIWD--VSSGKCLKTLKGHSNYVFCCNFNP- 123
Query: 148 DDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAED 207
             NLI++GS D SVR++D +       G  +     HS  V  V ++ D S +  SS+ D
Sbjct: 124 QSNLIVSGSFDESVRIWDVK------TGKCLKTLPAHSDPVSAVHFNRDGSLIV-SSSYD 176
Query: 208 GLLNIWD 214
           GL  IWD
Sbjct: 177 GLCRIWD 183

>pdb|4A7J|A Chain A, Symmetric Dimethylation Of H3 Arginine 2 Is A Novel Histone Mark That Supports Euchromatin Maintenance Length = 318

Iteration: 1
 Score = 59.3 bits (142), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 43/127 (33%), Positives = 64/127 (50%), Gaps = 11/127 (8%)
Query: 88  NGHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPL 147
           +GH+  + DV +  S +    S  DD  L +WD  V +   +K  K H   + C ++NP 
Sbjct: 68  SGHKLGISDVAW-SSDSNLLVSASDDKTLKIWD--VSSGKCLKTLKGHSNYVFCCNFNP- 123
Query: 148 DDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAED 207
             NLI++GS D SVR++D +       G  +     HS  V  V ++ D S +  SS+ D
Sbjct: 124 QSNLIVSGSFDESVRIWDVK------TGKCLKTLPAHSDPVSAVHFNRDGSLIV-SSSYD 176
Query: 208 GLLNIWD 214
           GL  IWD
Sbjct: 177 GLCRIWD 183

>pdb|2H9M|A Chain A, Wdr5 In Complex With Unmodified H3k4 Peptide Length = 313

Iteration: 1
 Score = 59.3 bits (142), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 43/127 (33%), Positives = 64/127 (50%), Gaps = 11/127 (8%)
Query: 88  NGHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPL 147
           +GH+  + DV +  S +    S  DD  L +WD  V +   +K  K H   + C ++NP 
Sbjct: 63  SGHKLGISDVAW-SSDSNLLVSASDDKTLKIWD--VSSGKCLKTLKGHSNYVFCCNFNP- 118
Query: 148 DDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAED 207
             NLI++GS D SVR++D +       G  +     HS  V  V ++ D S +  SS+ D
Sbjct: 119 QSNLIVSGSFDESVRIWDVK------TGKCLKTLPAHSDPVSAVHFNRDGSLIV-SSSYD 171
Query: 208 GLLNIWD 214
           GL  IWD
Sbjct: 172 GLCRIWD 178

>pdb|3MXX|A Chain A, Crystal Structure Of Wdr5 Mutant (S62a) Length = 315

Iteration: 1
 Score = 59.3 bits (142), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 43/127 (33%), Positives = 64/127 (50%), Gaps = 11/127 (8%)
Query: 88  NGHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPL 147
           +GH+  + DV +  S +    S  DD  L +WD  V +   +K  K H   + C ++NP 
Sbjct: 65  SGHKLGISDVAW-SSDSNLLVSASDDKTLKIWD--VSSGKCLKTLKGHSNYVFCCNFNP- 120
Query: 148 DDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAED 207
             NLI++GS D SVR++D +       G  +     HS  V  V ++ D S +  SS+ D
Sbjct: 121 QSNLIVSGSFDESVRIWDVK------TGKCLKTLPAHSDPVSAVHFNRDGSLIV-SSSYD 173
Query: 208 GLLNIWD 214
           GL  IWD
Sbjct: 174 GLCRIWD 180

>pdb|3EMH|A Chain A, Structural Basis Of Wdr5-Mll Interaction Length = 318

Iteration: 1
 Score = 59.3 bits (142), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 43/127 (33%), Positives = 64/127 (50%), Gaps = 11/127 (8%)
Query: 88  NGHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPL 147
           +GH+  + DV +  S +    S  DD  L +WD  V +   +K  K H   + C ++NP 
Sbjct: 68  SGHKLGISDVAW-SSDSNLLVSASDDKTLKIWD--VSSGKCLKTLKGHSNYVFCCNFNP- 123
Query: 148 DDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAED 207
             NLI++GS D SVR++D +       G  +     HS  V  V ++ D S +  SS+ D
Sbjct: 124 QSNLIVSGSFDESVRIWDVK------TGKCLKTLPAHSDPVSAVHFNRDGSLIV-SSSYD 176
Query: 208 GLLNIWD 214
           GL  IWD
Sbjct: 177 GLCRIWD 183

>pdb|3SMR|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 With Compound Length = 312

Iteration: 1
 Score = 59.3 bits (142), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 43/127 (33%), Positives = 64/127 (50%), Gaps = 11/127 (8%)
Query: 88  NGHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPL 147
           +GH+  + DV +  S +    S  DD  L +WD  V +   +K  K H   + C ++NP 
Sbjct: 62  SGHKLGISDVAW-SSDSNLLVSASDDKTLKIWD--VSSGKCLKTLKGHSNYVFCCNFNP- 117
Query: 148 DDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAED 207
             NLI++GS D SVR++D +       G  +     HS  V  V ++ D S +  SS+ D
Sbjct: 118 QSNLIVSGSFDESVRIWDVK------TGKCLKTLPAHSDPVSAVHFNRDGSLIV-SSSYD 170
Query: 208 GLLNIWD 214
           GL  IWD
Sbjct: 171 GLCRIWD 177

>pdb|2G9A|A Chain A, Structural Basis For The Specific Recognition Of Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5 Length = 311

Iteration: 1
 Score = 59.3 bits (142), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 43/127 (33%), Positives = 64/127 (50%), Gaps = 11/127 (8%)
Query: 88  NGHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPL 147
           +GH+  + DV +  S +    S  DD  L +WD  V +   +K  K H   + C ++NP 
Sbjct: 61  SGHKLGISDVAW-SSDSNLLVSASDDKTLKIWD--VSSGKCLKTLKGHSNYVFCCNFNP- 116
Query: 148 DDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAED 207
             NLI++GS D SVR++D +       G  +     HS  V  V ++ D S +  SS+ D
Sbjct: 117 QSNLIVSGSFDESVRIWDVK------TGKCLKTLPAHSDPVSAVHFNRDGSLIV-SSSYD 169
Query: 208 GLLNIWD 214
           GL  IWD
Sbjct: 170 GLCRIWD 176

>pdb|2G99|A Chain A, Structural Basis For The Specific Recognition Of Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5 Length = 308

Iteration: 1
 Score = 59.3 bits (142), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 43/127 (33%), Positives = 64/127 (50%), Gaps = 11/127 (8%)
Query: 88  NGHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPL 147
           +GH+  + DV +  S +    S  DD  L +WD  V +   +K  K H   + C ++NP 
Sbjct: 58  SGHKLGISDVAW-SSDSNLLVSASDDKTLKIWD--VSSGKCLKTLKGHSNYVFCCNFNP- 113
Query: 148 DDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAED 207
             NLI++GS D SVR++D +       G  +     HS  V  V ++ D  S+  SS+ D
Sbjct: 114 QSNLIVSGSFDESVRIWDVK------TGKCLKTLPAHSDPVSAVHFNRD-GSLIVSSSYD 166
Query: 208 GLLNIWD 214
           GL  IWD
Sbjct: 167 GLCRIWD 173

>pdb|2H68|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module Of The Mll1 Complex Length = 312

Iteration: 1
 Score = 59.3 bits (142), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 43/127 (33%), Positives = 64/127 (50%), Gaps = 11/127 (8%)
Query: 88  NGHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPL 147
           +GH+  + DV +  S +    S  DD  L +WD  V +   +K  K H   + C ++NP 
Sbjct: 62  SGHKLGISDVAW-SSDSNLLVSASDDKTLKIWD--VSSGKCLKTLKGHSNYVFCCNFNP- 117
Query: 148 DDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAED 207
             NLI++GS D SVR++D +       G  +     HS  V  V ++ D  S+  SS+ D
Sbjct: 118 QSNLIVSGSFDESVRIWDVK------TGKCLKTLPAHSDPVSAVHFNRD-GSLIVSSSYD 170
Query: 208 GLLNIWD 214
           GL  IWD
Sbjct: 171 GLCRIWD 177

>pdb|2CNX|A Chain A, Wdr5 And Histone H3 Lysine 4 Dimethyl Complex At 2.1 Angstrom Length = 315

Iteration: 1
 Score = 58.9 bits (141), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 43/127 (33%), Positives = 64/127 (50%), Gaps = 11/127 (8%)
Query: 88  NGHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPL 147
           +GH+  + DV +  S +    S  DD  L +WD  V +   +K  K H   + C ++NP 
Sbjct: 65  SGHKLGISDVAW-SSDSNLLVSASDDKTLKIWD--VSSGKCLKTLKGHSNYVFCCNFNP- 120
Query: 148 DDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAED 207
             NLI++GS D SVR++D +       G  +     HS  V  V ++ D S +  SS+ D
Sbjct: 121 QSNLIVSGSFDESVRIWDVK------TGMCLKTLPAHSDPVSAVHFNRDGSLIV-SSSYD 173
Query: 208 GLLNIWD 214
           GL  IWD
Sbjct: 174 GLCRIWD 180

>pdb|2CO0|A Chain A, Wdr5 And Unmodified Histone H3 Complex At 2.25 Angstrom Length = 315

Iteration: 1
 Score = 58.9 bits (141), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 43/127 (33%), Positives = 64/127 (50%), Gaps = 11/127 (8%)
Query: 88  NGHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPL 147
           +GH+  + DV +  S +    S  DD  L +WD  V +   +K  K H   + C ++NP 
Sbjct: 65  SGHKLGISDVAW-SSDSNLLVSASDDKTLKIWD--VSSGKCLKTLKGHSNYVFCCNFNP- 120
Query: 148 DDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAED 207
             NLI++GS D SVR++D +       G  +     HS  V  V ++ D S +  SS+ D
Sbjct: 121 QSNLIVSGSFDESVRIWDVK------TGMCLKTLPAHSDPVSAVHFNRDGSLIV-SSSYD 173
Query: 208 GLLNIWD 214
           GL  IWD
Sbjct: 174 GLCRIWD 180

>pdb|2YMU|A Chain A, Structure Of A Highly Repetitive Propeller Structure Length = 577

Iteration: 1
 Score = 57.4 bits (137), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 57/225 (25%), Positives = 99/225 (44%), Gaps = 36/225 (16%)
Query: 1   MEILTGHQDNAEFALAMCPTEPYVLSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGS 60
           ++ LTGH  +    +A  P    + S   DK+V LW+    +  + T        G S S
Sbjct: 378 LQTLTGHSSSVR-GVAFSPDGQTIASASDDKTVKLWNRNGQLLQTLT--------GHSSS 428
Query: 61  IIKQSPKPGDGN-DKAADGPSVGPRGIYN----------GHEDTVEDVTFCPSSAQEFCS 109
           +   +  P D     A+D  +V    ++N          GH  +V  V F P   Q   S
Sbjct: 429 VWGVAFSPDDQTIASASDDKTVK---LWNRNGQLLQTLTGHSSSVRGVAFSPD-GQTIAS 484
Query: 110 VGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNL 169
             DD  + LW+ R G   +++    H + +  V ++P D   I + S D +V++++R   
Sbjct: 485 ASDDKTVKLWN-RNG--QLLQTLTGHSSSVRGVAFSP-DGQTIASASDDKTVKLWNRN-- 538
Query: 170 TSNGVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWD 214
                G  +    GHS++V  V +SPD  ++  S++ D  + +W+
Sbjct: 539 -----GQLLQTLTGHSSSVWGVAFSPDGQTI-ASASSDKTVKLWN 577

>pdb|2YMU|A Chain A, Structure Of A Highly Repetitive Propeller Structure Length = 577

Iteration: 1
 Score = 49.3 bits (116), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 36/134 (26%), Positives = 64/134 (47%), Gaps = 13/134 (9%)
Query: 81  VGPRGIYNGHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLH 140
           V  R     H  +V  V F P   Q   S  DD  + LW+ R G   +++    H + + 
Sbjct: 6   VKERNRLEAHSSSVRGVAFSPD-GQTIASASDDKTVKLWN-RNG--QLLQTLTGHSSSVW 61
Query: 141 CVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWSPDKSSV 200
            V ++P D   I + S D +V++++R        G  +    GHS++V  V +SPD  ++
Sbjct: 62  GVAFSP-DGQTIASASDDKTVKLWNRN-------GQLLQTLTGHSSSVRGVAFSPDGQTI 113
Query: 201 FGSSAEDGLLNIWD 214
             S+++D  + +W+
Sbjct: 114 -ASASDDKTVKLWN 126

>pdb|3IZ6|AA Chain a, Localization Of The Small Subunit Ribosomal Proteins Into A 5.5 A Cryo-Em Map Of Triticum Aestivum Translating 80s Ribosome Length = 380

Iteration: 1
 Score = 56.2 bits (134), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 36/141 (25%), Positives = 65/141 (46%), Gaps = 10/141 (7%)
Query: 86  IYNGHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPVI---KVEKAHDADLHCV 142
           +  GH+       + P       +   D   +LWD   G    I   +    H AD+  +
Sbjct: 152 VLTGHKGYASSCQYVPDQETRLITGSGDQTCVLWDVTTGQRISIFGSEFPSGHTADVLSL 211
Query: 143 DWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWSPDKSSVFG 202
             N L+ N+ ++GS D +VR++D R +TS  V      + GH   +  V++ PD    FG
Sbjct: 212 SINSLNANMFISGSCDTTVRLWDLR-ITSRAV----RTYHGHEGDINSVKFFPDGQR-FG 265
Query: 203 SSAEDGLLNIWDYEKVGKKVE 223
           + ++DG   ++D  + G +++
Sbjct: 266 TGSDDGTCRLFDM-RTGHQLQ 285

>pdb|1P22|A Chain A, Structure Of A Beta-Trcp1-Skp1-Beta-Catenin Complex: Destruction Motif Binding And Lysine Specificity On The Scfbeta-Trcp1 Ubiquitin Ligase Length = 435

Iteration: 1
 Score = 52.8 bits (125), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 47/216 (21%), Positives = 89/216 (41%), Gaps = 23/216 (10%)
Query: 2   EILTGHQDNAEFALAMCPTEPYVLSGGKDKSVVLWSIQD-HITSSATD--PATAKSAGSS 58
            ILTGH  +    L +   E  +++G  D +V +W +    + ++      A      ++
Sbjct: 167 RILTGHTGSV---LCLQYDERVIITGSSDSTVRVWDVNTGEMLNTLIHHCEAVLHLRFNN 223
Query: 59  GSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQEFCSVGDDSCLIL 118
           G ++  S          A    +  R +  GH   V  V F     +   S   D  + +
Sbjct: 224 GMMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDF---DDKYIVSASGDRTIKV 280
Query: 119 WDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPI 178
           W+    T   ++    H   + C+ +    D L+++GS+DN++R++D         G+ +
Sbjct: 281 WNT--STCEFVRTLNGHKRGIACLQYR---DRLVVSGSSDNTIRLWDIE------CGACL 329
Query: 179 NKFEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWD 214
              EGH   V C+++   +     S A DG + +WD
Sbjct: 330 RVLEGHEELVRCIRFDNKR---IVSGAYDGKIKVWD 362

>pdb|3ZEY|7 Chain 7, High-resolution Cryo-electron Microscopy Structure Of The Trypanosoma Brucei Ribosome Length = 318

Iteration: 1
 Score = 51.6 bits (122), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 42/132 (31%), Positives = 64/132 (48%), Gaps = 10/132 (7%)
Query: 87  YNGHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNP 146
           + GH   V  V F P + Q   S G D+ L +W+ + G         AH   + CV ++P
Sbjct: 105 FLGHTKDVLSVAFSPDNRQ-IVSGGRDNALRVWNVK-GECMHTLSRGAHTDWVSCVRFSP 162
Query: 147 -LDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSA 205
            LD  +I++G  DN V+++D         G  +   +GH+  V  V  SPD  S+  SS 
Sbjct: 163 SLDAPVIVSGGWDNLVKVWDL------ATGRLVTDLKGHTNYVTSVTVSPD-GSLCASSD 215
Query: 206 EDGLLNIWDYEK 217
           +DG+  +WD  K
Sbjct: 216 KDGVARLWDLTK 227

>pdb|2YNO|A Chain A, Yeast Betaprime Cop 1-304h6 Length = 310

Iteration: 1
 Score = 51.6 bits (122), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 53/215 (24%), Positives = 85/215 (39%), Gaps = 50/215 (23%)
Query: 14  ALAMCPTEPYVLSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGND 73
           ++A+ PT+PYVLSG  D +V LW+ +++     T                          
Sbjct: 102 SIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQT-------------------------- 135
Query: 74  KAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPVIKVEK 133
                        + GHE  V  V F P     F S   D  + +W     T P   +  
Sbjct: 136 -------------FEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQST-PNFTLTT 181
Query: 134 AHDADLHCVDWNPLDDN-LILTGSADNSVRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQ 192
             +  ++ VD+ PL D   ++T S D +++++D +        S +   EGH + V    
Sbjct: 182 GQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQT------KSCVATLEGHMSNVSFAV 235
Query: 193 WSPDKSSVFGSSAEDGLLNIWDYE--KVGKKVEQG 225
           + P    +  S +EDG L IW+    KV K +  G
Sbjct: 236 FHPTLPIII-SGSEDGTLKIWNSSTYKVEKTLNVG 269

>pdb|2YNN|A Chain A, Yeast Betaprime Cop 1-304 With Ktktn Motif Length = 304

Iteration: 1
 Score = 51.6 bits (122), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 53/215 (24%), Positives = 85/215 (39%), Gaps = 50/215 (23%)
Query: 14  ALAMCPTEPYVLSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGND 73
           ++A+ PT+PYVLSG  D +V LW+ +++     T                          
Sbjct: 102 SIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQT-------------------------- 135
Query: 74  KAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPVIKVEK 133
                        + GHE  V  V F P     F S   D  + +W     T P   +  
Sbjct: 136 -------------FEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQST-PNFTLTT 181
Query: 134 AHDADLHCVDWNPLDDN-LILTGSADNSVRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQ 192
             +  ++ VD+ PL D   ++T S D +++++D +        S +   EGH + V    
Sbjct: 182 GQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQT------KSCVATLEGHMSNVSFAV 235
Query: 193 WSPDKSSVFGSSAEDGLLNIWDYE--KVGKKVEQG 225
           + P    +  S +EDG L IW+    KV K +  G
Sbjct: 236 FHPTLPIII-SGSEDGTLKIWNSSTYKVEKTLNVG 269

>pdb|1ERJ|A Chain A, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1 Length = 393

Iteration: 1
 Score = 51.2 bits (121), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 60/245 (24%), Positives = 102/245 (41%), Gaps = 41/245 (16%)
Query: 3   ILTGHQDNAEFALAMCPTEPYVLSGGKDKSVVLW-----------SIQDHITSSATDPAT 51
           IL GH+ +  ++L   P+   ++SG  D++V +W           SI+D +T+ A  P  
Sbjct: 160 ILQGHEQDI-YSLDYFPSGDKLVSGSGDRTVRIWDLRTGQCSLTLSIEDGVTTVAVSPGD 218
Query: 52  AK--SAGSSGSIIKQ-SPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQEFC 108
            K  +AGS    ++    + G   ++       G      GH+D+V  V F     Q   
Sbjct: 219 GKYIAAGSLDRAVRVWDSETGFLVERLDSENESG-----TGHKDSVYSVVFT-RDGQSVV 272
Query: 109 SVGDDSCLILW---------DARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADN 159
           S   D  + LW         D++   S   +V      D         +D  IL+GS D 
Sbjct: 273 SGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQNDEYILSGSKDR 332
Query: 160 SVRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWSPDKS-----SVFGSSAEDGLLNIWD 214
            V  +D+++      G+P+   +GH  +V+ V  +   S     +VF + + D    IW 
Sbjct: 333 GVLFWDKKS------GNPLLMLQGHRNSVISVAVANGSSLGPEYNVFATGSGDCKARIWK 386
Query: 215 YEKVG 219
           Y+K+ 
Sbjct: 387 YKKIA 391

>pdb|2YNP|A Chain A, Yeast Betaprime Cop 1-604 With Ktktn Motif Length = 604

Iteration: 1
 Score = 51.2 bits (121), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 49/202 (24%), Positives = 80/202 (39%), Gaps = 48/202 (23%)
Query: 14  ALAMCPTEPYVLSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGND 73
           ++A+ PT+PYVLSG  D +V LW+ +++     T                          
Sbjct: 102 SIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQT-------------------------- 135
Query: 74  KAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPVIKVEK 133
                        + GHE  V  V F P     F S   D  + +W     T P   +  
Sbjct: 136 -------------FEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQST-PNFTLTT 181
Query: 134 AHDADLHCVDWNPLDDN-LILTGSADNSVRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQ 192
             +  ++ VD+ PL D   ++T S D +++++D +        S +   EGH + V    
Sbjct: 182 GQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQ------TKSCVATLEGHMSNVSFAV 235
Query: 193 WSPDKSSVFGSSAEDGLLNIWD 214
           + P    +  S +EDG L IW+
Sbjct: 236 FHPTLPIII-SGSEDGTLKIWN 256

>pdb|2XZM|R Chain R, Crystal Structure Of The Eukaryotic 40s Ribosomal Subunit In Complex With Initiation Factor 1. This File Contains The 40s Subunit And Initiation Factor For Molecule 1 Length = 343

Iteration: 1
 Score = 50.8 bits (120), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 58/229 (25%), Positives = 90/229 (39%), Gaps = 61/229 (26%)
Query: 3   ILTGHQD-----NAEFALAMCPTEPYVLSGGKDKSVVLWSIQDHITSSATDPATAKSAGS 57
           IL GH D      A F+       P ++SG +DK+V++W +                   
Sbjct: 16  ILEGHSDWVTSIVAGFSQKENEDSPVLISGSRDKTVMIWKLY------------------ 57
Query: 58  SGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQEFC---SVGDDS 114
                          ++  +G    P     GH   V D+      +QE C   S   D 
Sbjct: 58  ---------------EEEQNGYFGIPHKALTGHNHFVSDLAL----SQENCFAISSSWDK 98
Query: 115 CLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGV 174
            L LWD R GT+   K    H ++++ V ++P D+  IL+  A+  ++++   N+     
Sbjct: 99  TLRLWDLRTGTT--YKRFVGHQSEVYSVAFSP-DNRQILSAGAEREIKLW---NILGECK 152
Query: 175 GSPINKFEGHSAAVLCVQWSPDKSSV---------FGSSAEDGLLNIWD 214
            S   K E HS  V CV++SP   S          F S   DG L +W+
Sbjct: 153 FSSAEK-ENHSDWVSCVRYSPIMKSANKVQPFAPYFASVGWDGRLKVWN 200

>pdb|3MKQ|A Chain A, Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subcomplex Of The Copi Vesicular Coat Length = 814

Iteration: 1
 Score = 50.8 bits (120), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 49/202 (24%), Positives = 80/202 (39%), Gaps = 48/202 (23%)
Query: 14  ALAMCPTEPYVLSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGND 73
           ++A+ PT+PYVLSG  D +V LW+ +++     T                          
Sbjct: 102 SIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQT-------------------------- 135
Query: 74  KAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPVIKVEK 133
                        + GHE  V  V F P     F S   D  + +W     T P   +  
Sbjct: 136 -------------FEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQST-PNFTLTT 181
Query: 134 AHDADLHCVDWNPLDDN-LILTGSADNSVRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQ 192
             +  ++ VD+ PL D   ++T S D +++++D +        S +   EGH + V    
Sbjct: 182 GQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQ------TKSCVATLEGHMSNVSFAV 235
Query: 193 WSPDKSSVFGSSAEDGLLNIWD 214
           + P    +  S +EDG L IW+
Sbjct: 236 FHPTLPIII-SGSEDGTLKIWN 256

>pdb|4I79|A Chain A, Crystal Structure Of Human Nup43 Length = 399

Iteration: 1
 Score = 48.9 bits (115), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 47/179 (26%), Positives = 74/179 (41%), Gaps = 14/179 (7%)
Query: 84  RGIYNGHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARV-GTSPVIKVEKAHD-ADLHC 141
           R I N    T+  VTF  +   E  +V     L +WD R  G  P   +    D   LHC
Sbjct: 184 RTIDNADSSTLHAVTFLRTP--EILTVNSIGQLKIWDFRQQGNEPSQILSLTGDRVPLHC 241
Query: 142 VDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWSPDKSSVF 201
           VD +P   +++ TG  D  + ++D R  T      P++  + H A +  V + P      
Sbjct: 242 VDRHPNQQHVVATGGQDGMLSIWDVRQGTM-----PVSLLKAHEAEMWEVHFHPSNPEHL 296
Query: 202 GSSAEDGLLNIWDYE----KVGKKVEQGPRTTNYPAGLFFQHAGHRDKVVDFHWNASDP 256
            + +EDG L  WD      +      QG R++ + +      A     V+   W ++DP
Sbjct: 297 FTCSEDGSLWHWDASTDVPEKSSLFHQGGRSSTFLSHSISNQANVHQSVIS-SWLSTDP 354

>pdb|4A11|B Chain B, Structure Of The Hsddb1-Hscsa Complex Length = 408

Iteration: 1
 Score = 48.1 bits (113), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 48/198 (24%), Positives = 81/198 (40%), Gaps = 40/198 (20%)
Query: 23  YVLSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVG 82
           Y+LSGG D  +VL+ +++   SS     T K+  S G                 D P V 
Sbjct: 58  YMLSGGSDGVIVLYDLEN---SSRQSYYTCKAVCSIGR----------------DHPDV- 97
Query: 83  PRGIYNGHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDAR-VGTSPVIKVEKAHDADLHC 141
                  H  +VE V + P     F S   D  L +WD   + T+ V   E+     ++ 
Sbjct: 98  -------HRYSVETVQWYPHDTGMFTSSSFDKTLKVWDTNTLQTADVFNFEET----VYS 146
Query: 142 VDWNPLDDN--LILTGSADNSVRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWSPDKSS 199
              +P+     L+  G+    V++ D ++      GS  +  +GH   +L V WSP    
Sbjct: 147 HHMSPVSTKHCLVAVGTRGPKVQLCDLKS------GSCSHILQGHRQEILAVSWSPRYDY 200
Query: 200 VFGSSAEDGLLNIWDYEK 217
           +  +++ D  + +WD  +
Sbjct: 201 ILATASADSRVKLWDVRR 218

>pdb|4A11|B Chain B, Structure Of The Hsddb1-Hscsa Complex Length = 408

Iteration: 1
 Score = 43.1 bits (100), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 26/95 (27%), Positives = 45/95 (47%), Gaps = 15/95 (15%)
Query: 131 VEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRN-----------LTSNGVGSPIN 179
           VE+ H   ++ +D  P++   +L+G +D  + ++D  N           + S G   P  
Sbjct: 38  VERIHGGGINTLDIEPVEGRYMLSGGSDGVIVLYDLENSSRQSYYTCKAVCSIGRDHP-- 95
Query: 180 KFEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWD 214
             + H  +V  VQW P  + +F SS+ D  L +WD
Sbjct: 96  --DVHRYSVETVQWYPHDTGMFTSSSFDKTLKVWD 128

>pdb|4GQB|B Chain B, Crystal Structure Of The Human Prmt5:mep50 Complex Length = 344

Iteration: 1
 Score = 47.0 bits (110), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 46/191 (24%), Positives = 76/191 (39%), Gaps = 36/191 (18%)
Query: 90  HEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDD 149
           H+D V  V+   S  Q   S   D C+ +WD  +    V+   +AH A + CV  +P  D
Sbjct: 126 HDDIVSTVSVLSSGTQAV-SGSKDICIKVWD--LAQQVVLSSYRAHAAQVTCVAASPHKD 182
Query: 150 NLILTGSADNSVRMFDRRN-LTSNGVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAEDG 208
           ++ L+ S DN + ++D R    ++ +G     +   S A     W P +S VF    E+G
Sbjct: 183 SVFLSCSEDNRILLWDTRCPKPASQIGCSAPGYLPTSLA-----WHPQQSEVFVFGDENG 237
Query: 209 LLNIWDYEKVGKKVEQG------------PRTTNYPAGL---------------FFQHAG 241
            +++ D +     +               P +  + A L                F+   
Sbjct: 238 TVSLVDTKSTSCVLSSAVHSQCVTGLVFSPHSVPFLASLSEDCSLAVLDSSLSELFRSQA 297
Query: 242 HRDKVVDFHWN 252
           HRD V D  W+
Sbjct: 298 HRDFVRDATWS 308

>pdb|2PM9|A Chain A, Crystal Structure Of Yeast Sec1331 VERTEX ELEMENT OF THE Copii Vesicular Coat Length = 416

Iteration: 1
 Score = 46.6 bits (109), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 37/142 (26%), Positives = 61/142 (42%), Gaps = 9/142 (6%)
Query: 113 DSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSN 172
           DS L LW      S         D+  + +DW+   +N I+ G+ DN        N  +N
Sbjct: 44  DSSLELWSLLAADSEKPIASLQVDSKFNDLDWS--HNNKIIAGALDNGSLELYSTNEANN 101
Query: 173 GVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYP 232
            + S + +F  HS++V  V+++  + +V  S   +G + IWD  K  +        +NY 
Sbjct: 102 AINS-MARFSNHSSSVKTVKFNAKQDNVLASGGNNGEIFIWDMNKCTES------PSNYT 154
Query: 233 AGLFFQHAGHRDKVVDFHWNAS 254
                Q     D+V+   WN S
Sbjct: 155 PLTPGQSMSSVDEVISLAWNQS 176

>pdb|2AQ5|A Chain A, Crystal Structure Of Murine Coronin-1 Length = 402

Iteration: 1
 Score = 45.8 bits (107), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 27/102 (26%), Positives = 49/102 (48%), Gaps = 7/102 (6%)
Query: 129 IKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINK----FEGH 184
           + +   H A +  + W P +DN+I +GS D +V +++   +   G+  P+ +     EGH
Sbjct: 74  VPLVXGHTAPVLDIAWXPHNDNVIASGSEDCTVMVWE---IPDGGLVLPLREPVITLEGH 130
Query: 185 SAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGP 226
           +  V  V W P   +V  S+  D ++ +WD       +  GP
Sbjct: 131 TKRVGIVAWHPTAQNVLLSAGXDNVILVWDVGTGAAVLTLGP 172

>pdb|1NR0|A Chain A, Two Seven-Bladed Beta-Propeller Domains Revealed By The Structure Of A C. Elegans Homologue Of Yeast Actin Interacting Protein 1 (Aip1). Length = 611

Iteration: 1
 Score = 45.8 bits (107), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 41/158 (25%), Positives = 69/158 (43%), Gaps = 13/158 (8%)
Query: 85  GIYNGHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPVIKVEKA---HDADLHC 141
           G   G    +  V F PS      S  DD+ + +++      P  K +     H   +H 
Sbjct: 141 GNLTGQARAMNSVDFKPSRPFRIISGSDDNTVAIFEG-----PPFKFKSTFGEHTKFVHS 195
Query: 142 VDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPIN-KFEGHSAAVLCVQWSPDKSSV 200
           V +NP D +L  +   D ++ +++  + T  GV    + K   HS +V  + WSPD + +
Sbjct: 196 VRYNP-DGSLFASTGGDGTIVLYNGVDGTKTGVFEDDSLKNVAHSGSVFGLTWSPDGTKI 254
Query: 201 FGSSAEDGLLNIWDYE--KVGKKVEQGPRTTNYPAGLF 236
             +SA D  + IW+    KV K +  G R  +   G+ 
Sbjct: 255 ASASA-DKTIKIWNVATLKVEKTIPVGTRIEDQQLGII 291

>pdb|2PM6|B Chain B, Crystal Structure Of Yeast Sec1331 EDGE ELEMENT OF THE Copii Vesicular Coat, Native Version Length = 297

Iteration: 1
 Score = 44.7 bits (104), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 38/141 (26%), Positives = 56/141 (39%), Gaps = 18/141 (12%)
Query: 89  GHEDTVEDVTFC-PSSAQEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPL 147
           GHE  V  V +  P       S   D  +++W    G    I V   H A ++ V W P 
Sbjct: 51  GHEGPVWRVDWAHPKFGTILASCSYDGKVLIWKEENGRWSQIAVHAVHSASVNSVQWAPH 110
Query: 148 DDN-LILTGSADNSVRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWSP----------- 195
           +   L+L  S+D  V + + +    NG  SPI   + H+  V    W+P           
Sbjct: 111 EYGPLLLVASSDGKVSVVEFKE---NGTTSPI-IIDAHAIGVNSASWAPATIEEDGEHNG 166
Query: 196 -DKSSVFGSSAEDGLLNIWDY 215
             +S  F +   D L+ IW Y
Sbjct: 167 TKESRKFVTGGADNLVKIWKY 187

>pdb|3JRP|A Chain A, Sec13 With Nup145c (Aa109-179) Insertion Blade Length = 379

Iteration: 1
 Score = 44.3 bits (103), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 38/141 (26%), Positives = 56/141 (39%), Gaps = 18/141 (12%)
Query: 89  GHEDTVEDVTFC-PSSAQEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPL 147
           GHE  V  V +  P       S   D  +++W    G    I V   H A ++ V W P 
Sbjct: 53  GHEGPVWRVDWAHPKFGTILASCSYDGKVLIWKEENGRWSQIAVHAVHSASVNSVQWAPH 112
Query: 148 DDN-LILTGSADNSVRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWSP----------- 195
           +   L+L  S+D  V + + +    NG  SPI   + H+  V    W+P           
Sbjct: 113 EYGPLLLVASSDGKVSVVEFKE---NGTTSPI-IIDAHAIGVNSASWAPATIEEDGEHNG 168
Query: 196 -DKSSVFGSSAEDGLLNIWDY 215
             +S  F +   D L+ IW Y
Sbjct: 169 TKESRKFVTGGADNLVKIWKY 189

>pdb|2ZKQ|AA Chain a, Structure Of A Mammalian Ribosomal 40s Subunit Within An 80s Complex Obtained By Docking Homology Models Of The Rna And Proteins Into An 8.7 A Cryo-Em Map Length = 317

Iteration: 1
 Score = 44.3 bits (103), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 50/203 (24%), Positives = 84/203 (41%), Gaps = 48/203 (23%)
Query: 15  LAMCPTEP-YVLSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGND 73
           +A  P  P  +LS  +DK++++W +    T+                             
Sbjct: 21  IATTPQFPDMILSASRDKTIIMWKLTRDETNYGI-------------------------- 54
Query: 74  KAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQEFCSVGD-DSCLILWDARVGTSPVIKVE 132
                    P+    GH   V DV    SS  +F   G  D  L LWD   GT+    V 
Sbjct: 55  ---------PQRALRGHSHFVSDVVI--SSDGQFALSGSWDGTLRLWDLTTGTTTRRFV- 102
Query: 133 KAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQ 192
             H  D+  V ++  D+  I++GS D ++++++     + GV     + E HS  V CV+
Sbjct: 103 -GHTKDVLSVAFSS-DNRQIVSGSRDKTIKLWN-----TLGVCKYTVQDESHSEWVSCVR 155
Query: 193 WSPDKSS-VFGSSAEDGLLNIWD 214
           +SP+ S+ +  S   D L+ +W+
Sbjct: 156 FSPNSSNPIIVSCGWDKLVKVWN 178

>pdb|2ZKQ|AA Chain a, Structure Of A Mammalian Ribosomal 40s Subunit Within An 80s Complex Obtained By Docking Homology Models Of The Rna And Proteins Into An 8.7 A Cryo-Em Map Length = 317

Iteration: 1
 Score = 42.7 bits (99), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 40/171 (23%), Positives = 68/171 (39%), Gaps = 9/171 (5%)
Query: 84  RGIYNGHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVD 143
           RG   GH   V  +   P       S   D  +I+W      +     ++A     H V 
Sbjct: 8   RGTLKGHNGWVTQIATTPQFPDMILSASRDKTIIMWKLTRDETNYGIPQRALRGHSHFVS 67
Query: 144 WNPL--DDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWSPDKSSVF 201
              +  D    L+GS D ++R++D   LT+   G+   +F GH+  VL V +S D   + 
Sbjct: 68  DVVISSDGQFALSGSWDGTLRLWD---LTT---GTTTRRFVGHTKDVLSVAFSSDNRQIV 121
Query: 202 GSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKVVDFHWN 252
            S + D  + +W+   V K   Q    + + + + F        +V   W+
Sbjct: 122 -SGSRDKTIKLWNTLGVCKYTVQDESHSEWVSCVRFSPNSSNPIIVSCGWD 171

>pdb|4AOW|A Chain A, Crystal Structure Of The Human Rack1 Protein At A Resolution Of 2.45 Angstrom Length = 340

Iteration: 1
 Score = 44.3 bits (103), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 50/203 (24%), Positives = 84/203 (41%), Gaps = 48/203 (23%)
Query: 15  LAMCPTEP-YVLSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGND 73
           +A  P  P  +LS  +DK++++W +    T+                             
Sbjct: 44  IATTPQFPDMILSASRDKTIIMWKLTRDETNYGI-------------------------- 77
Query: 74  KAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQEFCSVGD-DSCLILWDARVGTSPVIKVE 132
                    P+    GH   V DV    SS  +F   G  D  L LWD   GT+    V 
Sbjct: 78  ---------PQRALRGHSHFVSDVVI--SSDGQFALSGSWDGTLRLWDLTTGTTTRRFV- 125
Query: 133 KAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQ 192
             H  D+  V ++  D+  I++GS D ++++++     + GV     + E HS  V CV+
Sbjct: 126 -GHTKDVLSVAFSS-DNRQIVSGSRDKTIKLWN-----TLGVCKYTVQDESHSEWVSCVR 178
Query: 193 WSPDKSS-VFGSSAEDGLLNIWD 214
           +SP+ S+ +  S   D L+ +W+
Sbjct: 179 FSPNSSNPIIVSCGWDKLVKVWN 201

>pdb|4AOW|A Chain A, Crystal Structure Of The Human Rack1 Protein At A Resolution Of 2.45 Angstrom Length = 340

Iteration: 1
 Score = 42.4 bits (98), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 40/171 (23%), Positives = 68/171 (39%), Gaps = 9/171 (5%)
Query: 84  RGIYNGHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVD 143
           RG   GH   V  +   P       S   D  +I+W      +     ++A     H V 
Sbjct: 31  RGTLKGHNGWVTQIATTPQFPDMILSASRDKTIIMWKLTRDETNYGIPQRALRGHSHFVS 90
Query: 144 WNPL--DDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWSPDKSSVF 201
              +  D    L+GS D ++R++D   LT+   G+   +F GH+  VL V +S D   + 
Sbjct: 91  DVVISSDGQFALSGSWDGTLRLWD---LTT---GTTTRRFVGHTKDVLSVAFSSDNRQIV 144
Query: 202 GSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKVVDFHWN 252
            S + D  + +W+   V K   Q    + + + + F        +V   W+
Sbjct: 145 -SGSRDKTIKLWNTLGVCKYTVQDESHSEWVSCVRFSPNSSNPIIVSCGWD 194

>pdb|2PM9|B Chain B, Crystal Structure Of Yeast Sec1331 VERTEX ELEMENT OF THE Copii Vesicular Coat Length = 297

Iteration: 1
 Score = 44.3 bits (103), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 37/141 (26%), Positives = 56/141 (39%), Gaps = 18/141 (12%)
Query: 89  GHEDTVEDVTFC-PSSAQEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPL 147
           GHE  V  V +  P       S   D  +++W    G    I V   H A ++ V W P 
Sbjct: 51  GHEGPVWRVDWAHPKFGTILASCSYDGKVMIWKEENGRWSQIAVHAVHSASVNSVQWAPH 110
Query: 148 DDN-LILTGSADNSVRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWSP----------- 195
           +   ++L  S+D  V + + +    NG  SPI   + H+  V    W+P           
Sbjct: 111 EYGPMLLVASSDGKVSVVEFKE---NGTTSPI-IIDAHAIGVNSASWAPATIEEDGEHNG 166
Query: 196 -DKSSVFGSSAEDGLLNIWDY 215
             +S  F +   D L+ IW Y
Sbjct: 167 TKESRKFVTGGADNLVKIWKY 187

>pdb|2B4E|A Chain A, Crystal Structure Of Murine Coronin-1: Monoclinic Form Length = 402

Iteration: 1
 Score = 43.9 bits (102), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 27/97 (27%), Positives = 47/97 (48%), Gaps = 7/97 (7%)
Query: 134 AHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINK----FEGHSAAVL 189
            H A +  + W P +DN+I +GS D +V +++   +   G+  P+ +     EGH+  V 
Sbjct: 79  GHTAPVLDIAWCPHNDNVIASGSEDCTVMVWE---IPDGGLVLPLREPVITLEGHTKRVG 135
Query: 190 CVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGP 226
            V W P   +V  S+  D ++ +WD       +  GP
Sbjct: 136 IVAWHPTAQNVLLSAGCDNVILVWDVGTGAAVLTLGP 172

>pdb|3FM0|A Chain A, Crystal Structure Of Wd40 Protein Ciao1 Length = 345

Iteration: 1
 Score = 43.9 bits (102), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 35/146 (23%), Positives = 60/146 (41%), Gaps = 19/146 (13%)
Query: 89  GHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARV----------GTSP----VIKVEKA 134
           GHE TV  + F PS  Q   S  DD  + +W   +          G+ P    +  +   
Sbjct: 192 GHESTVWSLAFDPS-GQRLASCSDDRTVRIWRQYLPGNEQGVACSGSDPSWKCICTLSGF 250
Query: 135 HDADLHCVDWNPLDDNLILTGSADNSVRMFDR---RNLTSNGVGSPINKFEGHSAAVLCV 191
           H   ++ + W  L   L  T   D+++R+F      +          +  + HS  V CV
Sbjct: 251 HSRTIYDIAWCQLTGALA-TACGDDAIRVFQEDPNSDPQQPTFSLTAHLHQAHSQDVNCV 309
Query: 192 QWSPDKSSVFGSSAEDGLLNIWDYEK 217
            W+P +  +  S ++DG +  W Y++
Sbjct: 310 AWNPKEPGLLASCSDDGEVAFWKYQR 335

>pdb|4AEZ|A Chain A, Crystal Structure Of Mitotic Checkpoint Complex Length = 401

Iteration: 1
 Score = 43.5 bits (101), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 36/136 (26%), Positives = 56/136 (41%), Gaps = 9/136 (6%)
Query: 85  GIYNGHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDW 144
           G   GH   V  + +  S   +  S G+D+ + +WDAR       K    H+A +  V W
Sbjct: 211 GTLQGHSSEVCGLAW-RSDGLQLASGGNDNVVQIWDARSSIPKFTKTN--HNAAVKAVAW 267
Query: 145 NPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWSPDKSSVFGSS 204
            P   NL+ TG       M  + +  +   G+ +N  +  S  V  + WSP    +  + 
Sbjct: 268 CPWQSNLLATGGGT----MDKQIHFWNAATGARVNTVDAGS-QVTSLIWSPHSKEIMSTH 322
Query: 205 A-EDGLLNIWDYEKVG 219
              D  L+IW Y   G
Sbjct: 323 GFPDNNLSIWSYSSSG 338

>pdb|3SFZ|A Chain A, Crystal Structure Of Full-Length Murine Apaf-1 Length = 1249

Iteration: 1
 Score = 43.1 bits (100), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 36/136 (26%), Positives = 65/136 (47%), Gaps = 13/136 (9%)
Query: 84  RGIYNGHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVD 143
           R +   H D V    F     Q   S G D  L ++ A  G   ++ + KAH+ ++ C  
Sbjct: 608 RLVVRPHTDAVYHACF-SQDGQRIASCGADKTLQVFKAETG-EKLLDI-KAHEDEVLCCA 664
Query: 144 WNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWSPDKSS--VF 201
           ++  DD+ I T SAD  V+++D      +  G  ++ ++ HS  V C  ++ +KS+  + 
Sbjct: 665 FSS-DDSYIATCSADKKVKIWD------SATGKLVHTYDEHSEQVNCCHFT-NKSNHLLL 716
Query: 202 GSSAEDGLLNIWDYEK 217
            + + D  L +WD  +
Sbjct: 717 ATGSNDFFLKLWDLNQ 732

>pdb|3SHF|A Chain A, Crystal Structure Of The R265s Mutant Of Full-Length Murine Apaf-1 Length = 1256

Iteration: 1
 Score = 43.1 bits (100), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 36/136 (26%), Positives = 65/136 (47%), Gaps = 13/136 (9%)
Query: 84  RGIYNGHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVD 143
           R +   H D V    F     Q   S G D  L ++ A  G   ++ + KAH+ ++ C  
Sbjct: 615 RLVVRPHTDAVYHACF-SQDGQRIASCGADKTLQVFKAETG-EKLLDI-KAHEDEVLCCA 671
Query: 144 WNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWSPDKSS--VF 201
           ++  DD+ I T SAD  V+++D      +  G  ++ ++ HS  V C  ++ +KS+  + 
Sbjct: 672 FSS-DDSYIATCSADKKVKIWD------SATGKLVHTYDEHSEQVNCCHFT-NKSNHLLL 723
Query: 202 GSSAEDGLLNIWDYEK 217
            + + D  L +WD  +
Sbjct: 724 ATGSNDFFLKLWDLNQ 739

>pdb|3JRO|A Chain A, Nup84-Nup145c-Sec13 Edge Element Of The Npc Lattice Length = 753

Iteration: 1
 Score = 42.7 bits (99), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 38/141 (26%), Positives = 56/141 (39%), Gaps = 18/141 (12%)
Query: 89  GHEDTVEDVTFC-PSSAQEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPL 147
           GHE  V  V +  P       S   D  +++W    G    I V   H A ++ V W P 
Sbjct: 51  GHEGPVWRVDWAHPKFGTILASCSYDGKVLIWKEENGRWSQIAVHAVHSASVNSVQWAPH 110
Query: 148 DDN-LILTGSADNSVRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWSP----------- 195
           +   L+L  S+D  V + + +    NG  SPI   + H+  V    W+P           
Sbjct: 111 EYGPLLLVASSDGKVSVVEFKE---NGTTSPI-IIDAHAIGVNSASWAPATIEEDGEHNG 166
Query: 196 -DKSSVFGSSAEDGLLNIWDY 215
             +S  F +   D L+ IW Y
Sbjct: 167 TKESRKFVTGGADNLVKIWKY 187

>pdb|2OVP|B Chain B, Structure Of The Skp1-Fbw7 Complex Length = 445

Iteration: 1
 Score = 42.7 bits (99), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 35/132 (26%), Positives = 60/132 (45%), Gaps = 18/132 (13%)
Query: 86  IYNGHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWN 145
           +  GH+D V  +T          S  DD+ L +W A  G    ++    H   +    W+
Sbjct: 113 VLKGHDDHV--ITCLQFCGNRIVSGSDDNTLKVWSAVTG--KCLRTLVGHTGGV----WS 164
Query: 146 P-LDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWSPDKSSVFGSS 204
             + DN+I++GS D ++++++         G  I+   GH++ V C+    +K  V GS 
Sbjct: 165 SQMRDNIIISGSTDRTLKVWNAET------GECIHTLYGHTSTVRCMHLH-EKRVVSGS- 216
Query: 205 AEDGLLNIWDYE 216
             D  L +WD E
Sbjct: 217 -RDATLRVWDIE 227

>pdb|4G56|B Chain B, Crystal Structure Of Full Length Prmt5/mep50 Complexes From Xenopus Laevis Length = 357

Iteration: 1
 Score = 42.7 bits (99), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 41/170 (24%), Positives = 63/170 (37%), Gaps = 24/170 (14%)
Query: 87  YNGHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPVIKVEK-AHDADLHCVDWN 145
           YN H   V  V  CP     F S G+D  ++LWD R    P  +++  A D     V W+
Sbjct: 177 YNAHSSEVNCVAACPGKDTIFLSCGEDGRILLWDTR-KPKPATRIDFCASDTIPTSVTWH 235
Query: 146 PLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSA 205
           P  D+    G    +V + + +N  S    +       HS  +  + +S   S    S +
Sbjct: 236 PEKDDTFACGDETGNVSLVNIKNPDSAQTSAV------HSQNITGLAYSYHSSPFLASIS 289
Query: 206 EDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKVVDFHWNASD 255
           ED  + + D +                    F+   HRD V    W+  D
Sbjct: 290 EDCTVAVLDAD----------------FSEVFRDLSHRDFVTGVAWSPLD 323

>pdb|2PM7|B Chain B, Crystal Structure Of Yeast Sec1331 EDGE ELEMENT OF THE Copii Vesicular Coat, Selenomethionine Version Length = 297

Iteration: 1
 Score = 41.2 bits (95), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 37/141 (26%), Positives = 53/141 (37%), Gaps = 18/141 (12%)
Query: 89  GHEDTVEDVTFC-PSSAQEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPL 147
           GHE  V  V +  P       S   D  + +W    G    I V   H A ++ V W P 
Sbjct: 51  GHEGPVWRVDWAHPKFGTILASCSYDGKVXIWKEENGRWSQIAVHAVHSASVNSVQWAPH 110
Query: 148 DDN-LILTGSADNSVRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWSP----------- 195
           +    +L  S+D  V + +      NG  SPI   + H+  V    W+P           
Sbjct: 111 EYGPXLLVASSDGKVSVVE---FKENGTTSPI-IIDAHAIGVNSASWAPATIEEDGEHNG 166
Query: 196 -DKSSVFGSSAEDGLLNIWDY 215
             +S  F +   D L+ IW Y
Sbjct: 167 TKESRKFVTGGADNLVKIWKY 187

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	309
2xyi_A	430	Probable histone-binding protein CAF1; transcripti	2e-77
2xyi_A	430	Probable histone-binding protein CAF1; transcripti	3e-27
2xyi_A	430	Probable histone-binding protein CAF1; transcripti	2e-18
3ei3_B	383	DNA damage-binding protein 2; UV-damage, DDB, nucl	3e-24
3ei3_B	383	DNA damage-binding protein 2; UV-damage, DDB, nucl	7e-18
3ei3_B	383	DNA damage-binding protein 2; UV-damage, DDB, nucl	4e-14
2pm9_A	416	Protein WEB1, protein transport protein SEC31; bet	3e-23
2pm9_A	416	Protein WEB1, protein transport protein SEC31; bet	3e-21
2pm9_A	416	Protein WEB1, protein transport protein SEC31; bet	5e-21
3mkq_A	814	Coatomer beta'-subunit; beta-propeller, alpha-sole	8e-23
3mkq_A	814	Coatomer beta'-subunit; beta-propeller, alpha-sole	1e-19
3mkq_A	814	Coatomer beta'-subunit; beta-propeller, alpha-sole	2e-12
3mkq_A	814	Coatomer beta'-subunit; beta-propeller, alpha-sole	5e-08
3mkq_A	814	Coatomer beta'-subunit; beta-propeller, alpha-sole	5e-06
3mkq_A	814	Coatomer beta'-subunit; beta-propeller, alpha-sole	1e-05
3fm0_A	345	Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD r	4e-22
3fm0_A	345	Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD r	8e-16
3fm0_A	345	Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD r	1e-12
4a11_B	408	DNA excision repair protein ERCC-8; DNA binding pr	7e-22
4a11_B	408	DNA excision repair protein ERCC-8; DNA binding pr	5e-15
4a11_B	408	DNA excision repair protein ERCC-8; DNA binding pr	2e-12
3sfz_A	1249	APAF-1, apoptotic peptidase activating factor 1; a	3e-20
3sfz_A	1249	APAF-1, apoptotic peptidase activating factor 1; a	9e-20
3sfz_A	1249	APAF-1, apoptotic peptidase activating factor 1; a	3e-19
3sfz_A	1249	APAF-1, apoptotic peptidase activating factor 1; a	9e-19
3sfz_A	1249	APAF-1, apoptotic peptidase activating factor 1; a	2e-18
3sfz_A	1249	APAF-1, apoptotic peptidase activating factor 1; a	5e-17
3sfz_A	1249	APAF-1, apoptotic peptidase activating factor 1; a	2e-15
3sfz_A	1249	APAF-1, apoptotic peptidase activating factor 1; a	7e-14
3dwl_C	377	Actin-related protein 2/3 complex subunit 1; prope	4e-20
3dwl_C	377	Actin-related protein 2/3 complex subunit 1; prope	3e-12
3dwl_C	377	Actin-related protein 2/3 complex subunit 1; prope	2e-08
3i2n_A	357	WD repeat-containing protein 92; WD40 repeats, str	1e-19
3i2n_A	357	WD repeat-containing protein 92; WD40 repeats, str	2e-15
3i2n_A	357	WD repeat-containing protein 92; WD40 repeats, str	3e-13
3i2n_A	357	WD repeat-containing protein 92; WD40 repeats, str	3e-04
4e54_B	435	DNA damage-binding protein 2; beta barrel, double	2e-19
4e54_B	435	DNA damage-binding protein 2; beta barrel, double	2e-18
1nr0_A	611	Actin interacting protein 1; beta propeller, WD40	2e-19
1nr0_A	611	Actin interacting protein 1; beta propeller, WD40	2e-16
1nr0_A	611	Actin interacting protein 1; beta propeller, WD40	2e-16
1nr0_A	611	Actin interacting protein 1; beta propeller, WD40	2e-15
1k8k_C	372	P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-	3e-19
1k8k_C	372	P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-	2e-11
1k8k_C	372	P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-	5e-11
2aq5_A	402	Coronin-1A; WD40 repeat, 7-bladed beta-propeller,	5e-19
2aq5_A	402	Coronin-1A; WD40 repeat, 7-bladed beta-propeller,	1e-16
2aq5_A	402	Coronin-1A; WD40 repeat, 7-bladed beta-propeller,	2e-15
2aq5_A	402	Coronin-1A; WD40 repeat, 7-bladed beta-propeller,	3e-14
1pgu_A	615	Actin interacting protein 1; WD repeat, seven-blad	3e-18
1pgu_A	615	Actin interacting protein 1; WD repeat, seven-blad	5e-18
1pgu_A	615	Actin interacting protein 1; WD repeat, seven-blad	1e-16
1pgu_A	615	Actin interacting protein 1; WD repeat, seven-blad	1e-13
1pgu_A	615	Actin interacting protein 1; WD repeat, seven-blad	2e-07
1pgu_A	615	Actin interacting protein 1; WD repeat, seven-blad	4e-07
2hes_X	330	YDR267CP; beta-propeller, WD40 repeat, biosyntheti	4e-17
2hes_X	330	YDR267CP; beta-propeller, WD40 repeat, biosyntheti	5e-17
2hes_X	330	YDR267CP; beta-propeller, WD40 repeat, biosyntheti	3e-15
2hes_X	330	YDR267CP; beta-propeller, WD40 repeat, biosyntheti	3e-13
2hes_X	330	YDR267CP; beta-propeller, WD40 repeat, biosyntheti	1e-09
3jro_A	753	Fusion protein of protein transport protein SEC13	5e-17
3jro_A	753	Fusion protein of protein transport protein SEC13	8e-16
3jro_A	753	Fusion protein of protein transport protein SEC13	4e-09
3ow8_A	321	WD repeat-containing protein 61; structural genomi	6e-17
3ow8_A	321	WD repeat-containing protein 61; structural genomi	1e-13
3ow8_A	321	WD repeat-containing protein 61; structural genomi	2e-13
3ow8_A	321	WD repeat-containing protein 61; structural genomi	5e-12
3ow8_A	321	WD repeat-containing protein 61; structural genomi	5e-06
4ery_A	312	WD repeat-containing protein 5; WD40, WIN motif, b	7e-17
4ery_A	312	WD repeat-containing protein 5; WD40, WIN motif, b	3e-15
4ery_A	312	WD repeat-containing protein 5; WD40, WIN motif, b	6e-15
4ery_A	312	WD repeat-containing protein 5; WD40, WIN motif, b	6e-08
1got_B	340	GT-beta; complex (GTP-binding/transducer), G prote	8e-17
1got_B	340	GT-beta; complex (GTP-binding/transducer), G prote	1e-14
1got_B	340	GT-beta; complex (GTP-binding/transducer), G prote	1e-13
1got_B	340	GT-beta; complex (GTP-binding/transducer), G prote	2e-08
3iz6_A	305	40S ribosomal protein SA (S2P); eukaryotic ribosom	1e-16
3iz6_A	305	40S ribosomal protein SA (S2P); eukaryotic ribosom	1e-15
3iz6_A	305	40S ribosomal protein SA (S2P); eukaryotic ribosom	7e-13
3iz6_A	305	40S ribosomal protein SA (S2P); eukaryotic ribosom	2e-12
3iz6_A	305	40S ribosomal protein SA (S2P); eukaryotic ribosom	2e-08
2pbi_B	354	Guanine nucleotide-binding protein subunit beta 5;	1e-16
2pbi_B	354	Guanine nucleotide-binding protein subunit beta 5;	3e-14
2pbi_B	354	Guanine nucleotide-binding protein subunit beta 5;	2e-13
2pbi_B	354	Guanine nucleotide-binding protein subunit beta 5;	3e-07
2pm7_B	297	Protein transport protein SEC13, protein transport	2e-16
2pm7_B	297	Protein transport protein SEC13, protein transport	7e-16
3odt_A	313	Protein DOA1; ubiquitin, nuclear protein; HET: MSE	2e-16
3odt_A	313	Protein DOA1; ubiquitin, nuclear protein; HET: MSE	3e-14
3odt_A	313	Protein DOA1; ubiquitin, nuclear protein; HET: MSE	5e-12
3k26_A	366	Polycomb protein EED; WD40, structural genomics, N	2e-16
3k26_A	366	Polycomb protein EED; WD40, structural genomics, N	3e-13
3k26_A	366	Polycomb protein EED; WD40, structural genomics, N	5e-06
4aez_A	401	CDC20, WD repeat-containing protein SLP1; cell cyc	2e-16
4aez_A	401	CDC20, WD repeat-containing protein SLP1; cell cyc	5e-15
4aez_A	401	CDC20, WD repeat-containing protein SLP1; cell cyc	4e-13
3zwl_B	369	Eukaryotic translation initiation factor 3 subuni;	2e-16
3zwl_B	369	Eukaryotic translation initiation factor 3 subuni;	2e-11
3zwl_B	369	Eukaryotic translation initiation factor 3 subuni;	8e-11
3zwl_B	369	Eukaryotic translation initiation factor 3 subuni;	5e-09
3mmy_A	368	MRNA export factor; mRNA export, nuclear protein;	3e-16
3mmy_A	368	MRNA export factor; mRNA export, nuclear protein;	2e-11
3mmy_A	368	MRNA export factor; mRNA export, nuclear protein;	4e-11
3mmy_A	368	MRNA export factor; mRNA export, nuclear protein;	8e-09
3mmy_A	368	MRNA export factor; mRNA export, nuclear protein;	3e-04
3f3f_A	351	Nucleoporin SEH1; structural protein, protein comp	5e-16
3f3f_A	351	Nucleoporin SEH1; structural protein, protein comp	1e-14
3f3f_A	351	Nucleoporin SEH1; structural protein, protein comp	4e-13
3f3f_A	351	Nucleoporin SEH1; structural protein, protein comp	8e-12
3f3f_A	351	Nucleoporin SEH1; structural protein, protein comp	3e-04
3vl1_A	420	26S proteasome regulatory subunit RPN14; beta-prop	5e-16
3vl1_A	420	26S proteasome regulatory subunit RPN14; beta-prop	8e-12
3vl1_A	420	26S proteasome regulatory subunit RPN14; beta-prop	6e-04
2xzm_R	343	RACK1; ribosome, translation; 3.93A {Tetrahymena t	5e-16
2xzm_R	343	RACK1; ribosome, translation; 3.93A {Tetrahymena t	1e-12
2xzm_R	343	RACK1; ribosome, translation; 3.93A {Tetrahymena t	2e-11
2xzm_R	343	RACK1; ribosome, translation; 3.93A {Tetrahymena t	4e-08
2xzm_R	343	RACK1; ribosome, translation; 3.93A {Tetrahymena t	6e-05
3jrp_A	379	Fusion protein of protein transport protein SEC13	8e-16
3jrp_A	379	Fusion protein of protein transport protein SEC13	1e-14
3jrp_A	379	Fusion protein of protein transport protein SEC13	4e-10
1yfq_A	342	Cell cycle arrest protein BUB3; WD repeat WD40 rep	1e-15
1yfq_A	342	Cell cycle arrest protein BUB3; WD repeat WD40 rep	2e-15
1yfq_A	342	Cell cycle arrest protein BUB3; WD repeat WD40 rep	4e-12
1yfq_A	342	Cell cycle arrest protein BUB3; WD repeat WD40 rep	4e-11
3gre_A	437	Serine/threonine-protein kinase VPS15; seven-blade	1e-15
3gre_A	437	Serine/threonine-protein kinase VPS15; seven-blade	9e-08
3gre_A	437	Serine/threonine-protein kinase VPS15; seven-blade	1e-07
1vyh_C	410	Platelet-activating factor acetylhydrolase IB alph	2e-15
1vyh_C	410	Platelet-activating factor acetylhydrolase IB alph	1e-14
1vyh_C	410	Platelet-activating factor acetylhydrolase IB alph	2e-14
1vyh_C	410	Platelet-activating factor acetylhydrolase IB alph	1e-13
1vyh_C	410	Platelet-activating factor acetylhydrolase IB alph	4e-10
1vyh_C	410	Platelet-activating factor acetylhydrolase IB alph	1e-09
3bg1_A	316	Protein SEC13 homolog; NPC, transport, WD repeat,	3e-15
3bg1_A	316	Protein SEC13 homolog; NPC, transport, WD repeat,	2e-14
3bg1_A	316	Protein SEC13 homolog; NPC, transport, WD repeat,	1e-13
3bg1_A	316	Protein SEC13 homolog; NPC, transport, WD repeat,	6e-12
2vdu_B	450	TRNA (guanine-N(7)-)-methyltransferase- associated	3e-15
2vdu_B	450	TRNA (guanine-N(7)-)-methyltransferase- associated	2e-08
2vdu_B	450	TRNA (guanine-N(7)-)-methyltransferase- associated	1e-05
3dm0_A	694	Maltose-binding periplasmic protein fused with RAC	3e-15
3dm0_A	694	Maltose-binding periplasmic protein fused with RAC	4e-11
3dm0_A	694	Maltose-binding periplasmic protein fused with RAC	8e-08
3dm0_A	694	Maltose-binding periplasmic protein fused with RAC	8e-07
1erj_A	393	Transcriptional repressor TUP1; beta-propeller, tr	4e-15
1erj_A	393	Transcriptional repressor TUP1; beta-propeller, tr	2e-10
1erj_A	393	Transcriptional repressor TUP1; beta-propeller, tr	1e-04
1erj_A	393	Transcriptional repressor TUP1; beta-propeller, tr	9e-04
1gxr_A	337	ESG1, transducin-like enhancer protein 1; transcri	5e-15
1gxr_A	337	ESG1, transducin-like enhancer protein 1; transcri	7e-13
1gxr_A	337	ESG1, transducin-like enhancer protein 1; transcri	1e-08
2ovr_B	445	FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40	5e-15
2ovr_B	445	FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40	6e-11
2ovr_B	445	FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40	1e-10
3v7d_B	464	Cell division control protein 4; WD 40 domain, pho	1e-14
3v7d_B	464	Cell division control protein 4; WD 40 domain, pho	1e-11
3v7d_B	464	Cell division control protein 4; WD 40 domain, pho	7e-09
3dw8_B	447	Serine/threonine-protein phosphatase 2A 55 kDa RE	1e-14
3dw8_B	447	Serine/threonine-protein phosphatase 2A 55 kDa RE	7e-08
3dw8_B	447	Serine/threonine-protein phosphatase 2A 55 kDa RE	1e-07
4aow_A	340	Guanine nucleotide-binding protein subunit beta-2;	2e-14
4aow_A	340	Guanine nucleotide-binding protein subunit beta-2;	3e-11
4aow_A	340	Guanine nucleotide-binding protein subunit beta-2;	3e-10
4aow_A	340	Guanine nucleotide-binding protein subunit beta-2;	5e-10
4aow_A	340	Guanine nucleotide-binding protein subunit beta-2;	7e-09
1r5m_A	425	SIR4-interacting protein SIF2; transcription corep	5e-14
1r5m_A	425	SIR4-interacting protein SIF2; transcription corep	2e-12
1r5m_A	425	SIR4-interacting protein SIF2; transcription corep	1e-07
3frx_A	319	Guanine nucleotide-binding protein subunit beta- l	6e-14
3frx_A	319	Guanine nucleotide-binding protein subunit beta- l	2e-13
3frx_A	319	Guanine nucleotide-binding protein subunit beta- l	5e-11
3frx_A	319	Guanine nucleotide-binding protein subunit beta- l	4e-09
3frx_A	319	Guanine nucleotide-binding protein subunit beta- l	2e-04
2j04_B	524	YDR362CP, TAU91; beta propeller, type 2 promoters,	6e-14
2j04_B	524	YDR362CP, TAU91; beta propeller, type 2 promoters,	2e-09
1p22_A	435	F-BOX/WD-repeat protein 1A; ubiquitination, degrad	1e-13
1p22_A	435	F-BOX/WD-repeat protein 1A; ubiquitination, degrad	1e-11
1p22_A	435	F-BOX/WD-repeat protein 1A; ubiquitination, degrad	7e-10
3lrv_A	343	PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiqu	3e-13
3lrv_A	343	PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiqu	2e-06
1sq9_A	397	Antiviral protein SKI8; WD repeat, beta-transducin	3e-13
1sq9_A	397	Antiviral protein SKI8; WD repeat, beta-transducin	4e-06
2oit_A	434	Nucleoporin 214KDA; NH2 terminal domain of NUP214/	6e-12
2oit_A	434	Nucleoporin 214KDA; NH2 terminal domain of NUP214/	1e-05
2oaj_A	902	Protein SNI1; WD40 repeat, beta propeller, endocyt	9e-10
2oaj_A	902	Protein SNI1; WD40 repeat, beta propeller, endocyt	4e-04
2oaj_A	902	Protein SNI1; WD40 repeat, beta propeller, endocyt	5e-04
3vu4_A	355	KMHSV2; beta-propeller fold, protein transport; 2.	5e-06
3vu4_A	355	KMHSV2; beta-propeller fold, protein transport; 2.	6e-04
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	4e-04

>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B Length = 430

 Score =  241 bits (618), Expect = 2e-77
 Identities = 87/300 (29%), Positives = 135/300 (45%), Gaps = 49/300 (16%)

Query: 4   LTGHQDNAEFALAMCPTEPYVLSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIK 63
           L GHQ              Y+LS   D ++ LW                           
Sbjct: 177 LRGHQKEGYGLSWNPNLNGYLLSASDDHTICLW--------------------------- 209

Query: 64  QSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARV 123
                 D N    +   +  + I+ GH   VEDV +       F SV DD  L++WD R 
Sbjct: 210 ------DINATPKEHRVIDAKNIFTGHTAVVEDVAWHLLHESLFGSVADDQKLMIWDTRN 263

Query: 124 G-TSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFE 182
             TS       AH A+++C+ +NP  + ++ TGSAD +V ++D RNL        ++ FE
Sbjct: 264 NNTSKPSHTVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKL-----KLHSFE 318

Query: 183 GHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGH 242
            H   +  VQWSP   ++  SS  D  L++WD  K+G++ +      + P  L F H GH
Sbjct: 319 SHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEE-QSTEDAEDGPPELLFIHGGH 377

Query: 243 RDKVVDFHWNASDPWTVVSVSDDCDSTGGGGTLQIWRMSDLIYRPQDEVL--AELEKFKA 300
             K+ DF WN ++PW + SVS+D         +Q+W+M++ +Y  ++  +  +ELE   A
Sbjct: 378 TAKISDFSWNPNEPWIICSVSED-------NIMQVWQMAENVYNDEEPEIPASELETNTA 430

>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B Length = 430

 Score =  109 bits (273), Expect = 3e-27
 Identities = 46/283 (16%), Positives = 89/283 (31%), Gaps = 61/283 (21%)

Query: 2   EILTGHQDNAEFALAMCPTEPYVL-SGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGS 60
           EI   H+          P    V+ +      V+++    H +                 
Sbjct: 122 EIKINHEGEV-NRARYMPQNACVIATKTPSSDVLVFDYTKHPS----------------- 163

Query: 61  IIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQEFCSVGDDSCLILWD 120
                        K        P     GH+     +++ P+      S  DD  + LWD
Sbjct: 164 -------------KPEPSGECQPDLRLRGHQKEGYGLSWNPNLNGYLLSASDDHTICLWD 210

Query: 121 ARVGTSPVIKVE-----KAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVG 175
                     ++       H A +  V W+ L ++L  + + D  + ++D RN  +    
Sbjct: 211 INATPKEHRVIDAKNIFTGHTAVVEDVAWHLLHESLFGSVADDQKLMIWDTRNNNT---S 267

Query: 176 SPINKFEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGL 235
            P +  + H+A V C+ ++P    +  + + D  + +WD            R        
Sbjct: 268 KPSHTVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDL-----------RNLKLKLHS 316

Query: 236 FFQHAGHRDKVVDFHWNASDPWTVVSVSDDCDSTGGGGTLQIW 278
           F     H+D++    W+  +   + S   D         L +W
Sbjct: 317 F---ESHKDEIFQVQWSPHNETILASSGTD-------RRLHVW 349

>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B Length = 430

 Score = 84.4 bits (209), Expect = 2e-18
 Identities = 36/184 (19%), Positives = 66/184 (35%), Gaps = 21/184 (11%)

Query: 101 PSSAQEFCSVGDDSCLILWDARVGTSPVIKVEK--AHDADLHCVDWNPLDDNLILTGSAD 158
           PS   +F     D+    +         I++E    H+ +++   + P +  +I T +  
Sbjct: 91  PSEDAQFDGSHYDNEKGEFGGFGSVCGKIEIEIKINHEGEVNRARYMPQNACVIATKTPS 150

Query: 159 NSVRMFDRRN----LTSNGVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWD 214
           + V +FD          +G   P  +  GH      + W+P+ +    S+++D  + +WD
Sbjct: 151 SDVLVFDYTKHPSKPEPSGECQPDLRLRGHQKEGYGLSWNPNLNGYLLSASDDHTICLWD 210

Query: 215 YEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKVVDFHWNASDPWTVVSVSDDCDSTGGGGT 274
                K+         +         GH   V D  W+        SV+DD         
Sbjct: 211 INATPKEHRVIDAKNIF--------TGHTAVVEDVAWHLLHESLFGSVADD-------QK 255

Query: 275 LQIW 278
           L IW
Sbjct: 256 LMIW 259

>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B* Length = 383

 Score =  100 bits (250), Expect = 3e-24
 Identities = 40/282 (14%), Positives = 77/282 (27%), Gaps = 67/282 (23%)

Query: 2   EILTGHQDNAEFALAMCPTEP-YVLSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGS 60
              +        +L   PT P  V  G K   ++LW           D            
Sbjct: 67  RTASPFDRRV-TSLEWHPTHPTTVAVGSKGGDIILW-----------DYDV--------- 105

Query: 61  IIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQEFCSVGDDSCLILWD 120
                           +  S        G  D +  + F   +  +           L D
Sbjct: 106 ---------------QNKTSFIQ---GMGPGDAITGMKFNQFNTNQLFVSSIRGATTLRD 147

Query: 121 ARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINK 180
                  V     + D    CVD +     ++ TG +   + +           G  I K
Sbjct: 148 FSGSVIQVFAKTDSWDYWYCCVDVSV-SRQMLATGDSTGRLLLLGLD-------GHEIFK 199

Query: 181 FEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHA 240
            + H A V   +++P    +  +S+ D  + +WD   +  K              +    
Sbjct: 200 EKLHKAKVTHAEFNPRCDWLMATSSVDATVKLWDLRNIKDK------------NSYIAEM 247

Query: 241 GHRDKVVDFHWNASDPWTVVSVSDDCDSTGGGGTLQIWRMSD 282
            H   V   ++N +D   +++             ++++   D
Sbjct: 248 PHEKPVNAAYFNPTDSTKLLTTDQR-------NEIRVYSSYD 282

>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B* Length = 383

 Score = 82.0 bits (203), Expect = 7e-18
 Identities = 42/300 (14%), Positives = 69/300 (23%), Gaps = 52/300 (17%)

Query: 4   LTGHQDNAEFALAMCPTEP-YVLSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSII 62
             G  D     +         +       +  L        S     A   S       +
Sbjct: 114 GMGPGDAI-TGMKFNQFNTNQLFVSSIRGATTLRDFS---GSVIQVFAKTDSWDYWYCCV 169

Query: 63  KQSPKPGDGNDKA---ADG------PSVGPRGIYNGHEDTVEDVTFCPSSAQEFCSVGDD 113
             S         A   + G                 H+  V    F P       +   D
Sbjct: 170 DVSV---SRQMLATGDSTGRLLLLGLDGHEIFKEKLHKAKVTHAEFNPRCDWLMATSSVD 226

Query: 114 SCLILWDARVGTS-PVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSN 172
           + + LWD R          E  H+  ++   +NP D   +LT    N +R++   + +  
Sbjct: 227 ATVKLWDLRNIKDKNSYIAEMPHEKPVNAAYFNPTDSTKLLTTDQRNEIRVYSSYDWSKP 286

Query: 173 GVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAEDGLLN--------IWDYEKVGKKVEQ 224
                    +      +   W P    +      D  L         I+D    G  V Q
Sbjct: 287 DQIIIHPHRQFQHLTPIKATWHPMYDLIVAGRYPDDQLLLNDKRTIDIYDANS-GGLVHQ 345

Query: 225 --GPRTTNYPAGLFFQHAGHRDKVVDFHWNASDPWTVVSVSDDCDSTGGGGTLQIWRMSD 282
              P      +            +  F         + S             + IW   D
Sbjct: 346 LRDPNAAGIIS------------LNKFS---PTGDVLASGMG--------FNILIWNRED 382

>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B* Length = 383

 Score = 71.2 bits (175), Expect = 4e-14
 Identities = 23/210 (10%), Positives = 57/210 (27%), Gaps = 36/210 (17%)

Query: 77  DGPSVGPRGIYNGHEDTVEDVTFCPSSAQEFCSVGDDSCL---ILWDARVGTSPVIKVEK 133
            G          G    +  +    SS  +        CL    +    + +  + +   
Sbjct: 15  QGGGRTGGQKKVGQTSILHYIYK--SSLGQSIHAQLRQCLQEPFIRS--LKSYKLHRTAS 70

Query: 134 AHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQW 193
             D  +  ++W+P     +  GS    + ++D          +   +  G   A+  +++
Sbjct: 71  PFDRRVTSLEWHPTHPTTVAVGSKGGDIILWD----YDVQNKTSFIQGMGPGDAITGMKF 126

Query: 194 SPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKV--VDFHW 251
           +   ++    S+  G   + D+     +V             F +          VD   
Sbjct: 127 NQFNTNQLFVSSIRGATTLRDFSGSVIQV-------------FAKTDSWDYWYCCVDVS- 172

Query: 252 NASDPWTVVSVSDDCDSTGGGGTLQIWRMS 281
                  + +           G L +  + 
Sbjct: 173 --VSRQMLATGDST-------GRLLLLGLD 193

>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae} Length = 416

 Score = 98.2 bits (245), Expect = 3e-23
 Identities = 39/272 (14%), Positives = 92/272 (33%), Gaps = 41/272 (15%)

Query: 4   LTGHQDNAEFALAMCPTEPYVL-SGGKDKSVVLWSIQD--HITSSATDPATAKSAGSSGS 60
            + H   +   +     +  VL SGG +  + +W +       S+ T     +S  S   
Sbjct: 109 FSNHSS-SVKTVKFNAKQDNVLASGGNNGEIFIWDMNKCTESPSNYTPLTPGQSMSSVDE 167

Query: 61  I--IKQSPKPGD-----GNDK------AADGPSV---GPRGIYNGHEDTVEDVTFCPSSA 104
           +  +  +          G+              V         +G +  +  V + P ++
Sbjct: 168 VISLAWNQSLAHVFASAGSSNFASIWDLKAKKEVIHLSYTSPNSGIKQQLSVVEWHPKNS 227

Query: 105 QEFC--SVGDDSCLI-LWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSV 161
                 +  D+   I +WD R   +P+  + + H   +  +DW   D++L+L+   DN+V
Sbjct: 228 TRVATATGSDNDPSILIWDLRNANTPLQTLNQGHQKGILSLDWCHQDEHLLLSSGRDNTV 287

Query: 162 RMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKK 221
            +++  +         +++F          +++P+   +F  ++ D  + +   +     
Sbjct: 288 LLWNPES------AEQLSQFPARGNWCFKTKFAPEAPDLFACASFDNKIEVQTLQ----- 336

Query: 222 VEQGPRTTNYPAGLFFQHAGHRDKVVDFHWNA 253
                                ++   DF WN 
Sbjct: 337 ------NLTNTLDEQETETKQQESETDF-WNN 361

>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae} Length = 416

 Score = 92.0 bits (229), Expect = 3e-21
 Identities = 38/190 (20%), Positives = 69/190 (36%), Gaps = 17/190 (8%)

Query: 89  GHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLD 148
            H+     V+   S      +   DS L LW      S         D+  + +DW+  +
Sbjct: 21  SHDKIPLLVSGTVSGTV-DANFSTDSSLELWSLLAADSEKPIASLQVDSKFNDLDWSH-N 78

Query: 149 DNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAEDG 208
           + +I     + S+ ++      +N   + + +F  HS++V  V+++  + +V  S   +G
Sbjct: 79  NKIIAGALDNGSLELYSTN--EANNAINSMARFSNHSSSVKTVKFNAKQDNVLASGGNNG 136

Query: 209 LLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKVVDFHWNASDPWTVVSVSDDCDS 268
            + IWD  K  +        +NY      Q     D+V+   WN S      S       
Sbjct: 137 EIFIWDMNKCTES------PSNYTPLTPGQSMSSVDEVISLAWNQSLAHVFASAGSS--- 187

Query: 269 TGGGGTLQIW 278
                   IW
Sbjct: 188 ----NFASIW 193

>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae} Length = 416

 Score = 91.2 bits (227), Expect = 5e-21
 Identities = 42/288 (14%), Positives = 86/288 (29%), Gaps = 67/288 (23%)

Query: 2   EILTGHQDNAEF-ALAMCPTEPYVLSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGS 60
           + +   Q +++F  L        +     + S+ L+               A +A +   
Sbjct: 59  KPIASLQVDSKFNDLDWSHNNKIIAGALDNGSLELY-----------STNEANNAIN--- 104

Query: 61  IIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQEFCSVGDDSCLILWD 120
                                     ++ H  +V+ V F         S G++  + +WD
Sbjct: 105 ----------------------SMARFSNHSSSVKTVKFNAKQDNVLASGGNNGEIFIWD 142

Query: 121 ARVGTSPVIKVE-------KAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNG 173
               T               +   ++  + WN    ++  +  + N   ++D +      
Sbjct: 143 MNKCTESPSNYTPLTPGQSMSSVDEVISLAWNQSLAHVFASAGSSNFASIWDLKAKKEVI 202

Query: 174 VGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAE---DGLLNIWDYEKVGKKVEQGPRTTN 230
             S  +   G    +  V+W P  S+   ++     D  + IWD            R  N
Sbjct: 203 HLSYTSPNSGIKQQLSVVEWHPKNSTRVATATGSDNDPSILIWD-----------LRNAN 251

Query: 231 YPAGLFFQHAGHRDKVVDFHWNASDPWTVVSVSDDCDSTGGGGTLQIW 278
            P     Q  GH+  ++   W   D   ++S   D        T+ +W
Sbjct: 252 TPLQTLNQ--GHQKGILSLDWCHQDEHLLLSSGRD-------NTVLLW 290

>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} Length = 814

 Score = 97.8 bits (244), Expect = 8e-23
 Identities = 49/282 (17%), Positives = 90/282 (31%), Gaps = 76/282 (26%)

Query: 4   LTGHQDNAEFALAMCPTEPYVLSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIK 63
            +   D     +   PTEP+VL+      V +W+ +                  +   ++
Sbjct: 9   FSNRSDRV-KGIDFHPTEPWVLTTLYSGRVEIWNYE------------------TQVEVR 49

Query: 64  QSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARV 123
                                      E  V    F            DD  + +++   
Sbjct: 50  S----------------------IQVTETPVRAGKFIARK-NWIIVGSDDFRIRVFN--Y 84

Query: 124 GTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINK-FE 182
            T   +   +AH   +  +  +P     +L+GS D +V++++  N         + + FE
Sbjct: 85  NTGEKVVDFEAHPDYIRSIAVHP-TKPYVLSGSDDLTVKLWNWEN------NWALEQTFE 137

Query: 183 GHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGH 242
           GH   V+CV ++P   S F S   D  + +W   +                  F    G 
Sbjct: 138 GHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQ-STP-------------NFTLTTGQ 183

Query: 243 RDKV--VDFHWNASDPWTVVSVSDDCDSTGGGGTLQIWRMSD 282
              V  VD++     P  +++ SDD        T++IW    
Sbjct: 184 ERGVNYVDYYPLPDKP-YMITASDDL-------TIKIWDYQT 217

>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} Length = 814

 Score = 88.2 bits (219), Expect = 1e-19
 Identities = 51/212 (24%), Positives = 83/212 (39%), Gaps = 49/212 (23%)

Query: 4   LTGHQDNAEFALAMCPTEPYVLSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIK 63
              H D    ++A+ PT+PYVLSG  D +V LW+ +                  +   ++
Sbjct: 93  FEAHPDYI-RSIAVHPTKPYVLSGSDDLTVKLWNWE------------------NNWALE 133

Query: 64  QSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARV 123
           Q                      + GHE  V  V F P     F S   D  + +W    
Sbjct: 134 Q---------------------TFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQ 172

Query: 124 GTSPVIKVEKAHDADLHCVDWNPL-DDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFE 182
            T P   +    +  ++ VD+ PL D   ++T S D +++++D +        S +   E
Sbjct: 173 ST-PNFTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQT------KSCVATLE 225

Query: 183 GHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWD 214
           GH + V    + P    +  S +EDG L IW+
Sbjct: 226 GHMSNVSFAVFHPT-LPIIISGSEDGTLKIWN 256

>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} Length = 814

 Score = 66.6 bits (163), Expect = 2e-12
 Identities = 39/280 (13%), Positives = 80/280 (28%), Gaps = 66/280 (23%)

Query: 1   MEILTGHQDNAEFALAMCPTEP-YVLSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSG 59
            +   GH+      +A  P +P    SG  D++V +WS+                     
Sbjct: 133 EQTFEGHEHFV-MCVAFNPKDPSTFASGCLDRTVKVWSL------------------GQS 173

Query: 60  SIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSS-AQEFCSVGDDSCLIL 118
           +                         +  G E  V  V + P        +  DD  + +
Sbjct: 174 TPNFT---------------------LTTGQERGVNYVDYYPLPDKPYMITASDDLTIKI 212

Query: 119 WDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPI 178
           WD +  T   +   + H +++    ++P    +I++GS D ++++++             
Sbjct: 213 WDYQ--TKSCVATLEGHMSNVSFAVFHP-TLPIIISGSEDGTLKIWNSST------YKVE 263

Query: 179 NKFEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQ 238
                      C+   P     + +S  D    +                 + P      
Sbjct: 264 KTLNVGLERSWCIATHPTGRKNYIASGFDNGFTVLSLG------------NDEPTLSLDP 311

Query: 239 HAGHRDKVVDFHWNASDPWTVVSVSDDCDSTGGGGTLQIW 278
             G        +  ASD +T  +V    +       L + 
Sbjct: 312 V-GKLVWSGGKNAAASDIFT--AVIRGNEEVEQDEPLSLQ 348

>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} Length = 814

 Score = 53.2 bits (128), Expect = 5e-08
 Identities = 43/292 (14%), Positives = 77/292 (26%), Gaps = 82/292 (28%)

Query: 1   MEILTGHQD--NAEFALAMCPTEPYVLSGGKDKSVVLWSIQDHITSSATDPATAKSAGSS 58
             + TG +   N        P +PY+++   D ++ +W  Q                  +
Sbjct: 177 FTLTTGQERGVNY-VDYYPLPDKPYMITASDDLTIKIWDYQ------------------T 217

Query: 59  GSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQEFCSVGDDSCLIL 118
            S +                          GH   V    F P+      S  +D  L +
Sbjct: 218 KSCV----------------------ATLEGHMSNVSFAVFHPTL-PIIISGSEDGTLKI 254

Query: 119 WDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPI 178
           W++      V K          C+  +P      +    DN   +         G   P 
Sbjct: 255 WNSSTYK--VEKTLNVGLERSWCIATHPTGRKNYIASGFDNGFTVLS------LGNDEPT 306

Query: 179 NKFEGHSAAVLCVQWSPDKS---SVFGSSAEDGLLNIWDYEKVG------KKVEQGPRTT 229
              +        + WS  K+   S   ++   G   +   E +         V+  P++ 
Sbjct: 307 LSLDPVG----KLVWSGGKNAAASDIFTAVIRGNEEVEQDEPLSLQTKELGSVDVFPQSL 362

Query: 230 NY-PAGLFF---------------QHAGHRDKVVDFHWNASDPWTVVSVSDD 265
            + P G F                       K  DF W   D  +   + + 
Sbjct: 363 AHSPNGRFVTVVGDGEYVIYTALAWRNKAFGKCQDFVW-GPDSNSYALIDET 413

>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} Length = 814

 Score = 47.0 bits (112), Expect = 5e-06
 Identities = 39/291 (13%), Positives = 76/291 (26%), Gaps = 58/291 (19%)

Query: 4   LTGHQDNAEFALAMCPT-EPYVLSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSII 62
           L    + + + +A  PT     ++ G D    + S+ +   + + DP   K   S G   
Sbjct: 266 LNVGLERS-WCIATHPTGRKNYIASGFDNGFTVLSLGNDEPTLSLDPVG-KLVWSGGKNA 323

Query: 63  KQSP---KPGDGNDKAADG-PSVGPRGIYNGHEDTVEDVTFCPSSAQEFCSVGDDSCLIL 118
             S        GN++     P           +   + +   P+  +    VGD   +I 
Sbjct: 324 AASDIFTAVIRGNEEVEQDEPLSLQTKELGSVDVFPQSLAHSPNG-RFVTVVGDGEYVIY 382

Query: 119 WDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPI 178
                     +              W P D N          ++ +              
Sbjct: 383 T--------ALAWRNKAFGKCQDFVWGP-DSNSYALIDETGQIKYYK------------- 420

Query: 179 NKFEGHSAAVLCVQWSPDKSSVFG----SSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAG 234
                       V        +F         DG +  +D        + G         
Sbjct: 421 ---NFKEVTSWSVPMHSAIDRLFSGALLGVKSDGFVYFFD-------WDNGT-------- 462

Query: 235 LFFQHAGHRDKVVDFHWNASDPWTVVSVSDDCDSTGGGGTLQIWRMSDLIY 285
           L  +   +   V+   W+  +   V+ V+   +S G   +      +   Y
Sbjct: 463 LVRRIDVNAKDVI---WS-DNGELVMIVNT--NSNGDEASGYTLLFNKDAY 507

>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} Length = 814

 Score = 45.8 bits (109), Expect = 1e-05
 Identities = 17/101 (16%), Positives = 32/101 (31%), Gaps = 28/101 (27%)

Query: 180 KFEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQH 239
            F   S  V  + + P +  V  ++   G + IW+YE    +V               Q 
Sbjct: 8   TFSNRSDRVKGIDFHPTEPWV-LTTLYSGRVEIWNYET-QVEVRS------------IQ- 52

Query: 240 AGHRDKV--VDFHWNASDPWTVVSVSDDCDSTGGGGTLQIW 278
                 V    F    +    ++  SDD         ++++
Sbjct: 53  -VTETPVRAGKFI---ARKNWIIVGSDDF-------RIRVF 82

>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens} Length = 345

 Score = 93.8 bits (234), Expect = 4e-22
 Identities = 50/278 (17%), Positives = 88/278 (31%), Gaps = 68/278 (24%)

Query: 4   LTGHQDNAEFALAMCPTEPYVLSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIK 63
           +  H D+  + LA  P    + S G D+ + +W                           
Sbjct: 11  VPAHPDSRCWFLAWNPAGTLLASCGGDRRIRIWG-------------------------- 44

Query: 64  QSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARV 123
                            +    +  GH+ TV  V + P       S   D+   +W    
Sbjct: 45  -----------TEGDSWICKSVLSEGHQRTVRKVAWSPCG-NYLASASFDATTCIWKKNQ 92

Query: 124 GTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEG 183
                +   + H+ ++  V W P   NL+ T S D SV +++   +        ++    
Sbjct: 93  DDFECVTTLEGHENEVKSVAWAP-SGNLLATCSRDKSVWVWE---VDEEDEYECVSVLNS 148

Query: 184 HSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHR 243
           H+  V  V W P +  +  S++ D  + ++  E+    V                  GH 
Sbjct: 149 HTQDVKHVVWHPSQELLA-SASYDDTVKLYR-EEEDDWVCCATLE------------GHE 194

Query: 244 DKV--VDFHWNASDPWTVVSVSDDCDSTGGGGTLQIWR 279
             V  + F         + S SDD        T++IWR
Sbjct: 195 STVWSLAFD---PSGQRLASCSDD-------RTVRIWR 222

>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens} Length = 345

 Score = 75.7 bits (187), Expect = 8e-16
 Identities = 45/292 (15%), Positives = 90/292 (30%), Gaps = 64/292 (21%)

Query: 1   MEILTGHQDNAEFALAMCPTEPYVLSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGS 60
           +  L GH++    ++A  P+   + +  +DKSV +W                        
Sbjct: 98  VTTLEGHENEV-KSVAWAPSGNLLATCSRDKSVWVWE----------------------- 133

Query: 61  IIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQEFCSVGDDSCLILWD 120
                           +        + N H   V+ V + PS  +   S   D  + L+ 
Sbjct: 134 --------------VDEEDEYECVSVLNSHTQDVKHVVWHPSQ-ELLASASYDDTVKLYR 178

Query: 121 ARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGV------ 174
                       + H++ +  + ++P     + + S D +VR++ +    +         
Sbjct: 179 EEEDDWVCCATLEGHESTVWSLAFDP-SGQRLASCSDDRTVRIWRQYLPGNEQGVACSGS 237

Query: 175 ---GSPINKFEG-HSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTN 230
                 I    G HS  +  + W    +    ++  D  + ++  E      +Q   +  
Sbjct: 238 DPSWKCICTLSGFHSRTIYDIAWCQL-TGALATACGDDAIRVFQ-EDPNSDPQQPTFSL- 294

Query: 231 YPAGLFFQHAGHRDKVVDFHWNASDPWTVVSVSDDCDSTGGGGTLQIWRMSD 282
                   H  H   V    WN  +P  + S SDD       G +  W+   
Sbjct: 295 ----TAHLHQAHSQDVNCVAWNPKEPGLLASCSDD-------GEVAFWKYQR 335

>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens} Length = 345

 Score = 66.4 bits (163), Expect = 1e-12
 Identities = 31/191 (16%), Positives = 61/191 (31%), Gaps = 39/191 (20%)

Query: 1   MEILTGHQDNAEFALAMCPTEPYVLSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGS 60
              L GH+    ++LA  P+   + S   D++V +W                  +  S  
Sbjct: 187 CATLEGHESTV-WSLAFDPSGQRLASCSDDRTVRIW---RQYLPGNEQGVACSGSDPSWK 242

Query: 61  IIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQEFCSVGDDSCLILWD 120
            I                       +   H  T+ D+ +C  +     +   D  + ++ 
Sbjct: 243 CI---------------------CTLSGFHSRTIYDIAWCQLT-GALATACGDDAIRVFQ 280

Query: 121 ARVGTSP-------VIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNG 173
               + P          + +AH  D++CV WNP +  L+ + S D  V  +  +      
Sbjct: 281 EDPNSDPQQPTFSLTAHLHQAHSQDVNCVAWNPKEPGLLASCSDDGEVAFWKYQR----- 335

Query: 174 VGSPINKFEGH 184
               ++    H
Sbjct: 336 -PEGLHHHHHH 345

>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens} Length = 408

 Score = 93.8 bits (234), Expect = 7e-22
 Identities = 52/284 (18%), Positives = 94/284 (33%), Gaps = 55/284 (19%)

Query: 2   EILTGHQDNAEFALAMCPTE-PYVLSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGS 60
           ++   H       L + P E  Y+LSGG D  +VL+ ++                  + S
Sbjct: 37  DVERIHGGGI-NTLDIEPVEGRYMLSGGSDGVIVLYDLE------------------NSS 77

Query: 61  IIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQEFCSVGDDSCLILWD 120
                                  R   + H  +VE V + P     F S   D  L +WD
Sbjct: 78  RQSYYTCKA---------VCSIGRDHPDVHRYSVETVQWYPHDTGMFTSSSFDKTLKVWD 128

Query: 121 ARVGTSPVIKVEKAHDADLHCVDWNP--LDDNLILTGSADNSVRMFDRRNLTSNGVGSPI 178
                     V    +  ++    +P      L+  G+    V++ D ++      GS  
Sbjct: 129 TNTLQ--TADVFN-FEETVYSHHMSPVSTKHCLVAVGTRGPKVQLCDLKS------GSCS 179

Query: 179 NKFEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQ 238
           +  +GH   +L V WSP    +  +++ D  + +WD  +            N       +
Sbjct: 180 HILQGHRQEILAVSWSPRYDYILATASADSRVKLWDVRR-ASGCLITLDQHNGKKSQAVE 238

Query: 239 HA--GHRDKV--VDFHWNASDPWTVVSVSDDCDSTGGGGTLQIW 278
            A   H  KV  + F  +      +++V  D         +++W
Sbjct: 239 SANTAHNGKVNGLCFTSDGL---HLLTVGTD-------NRMRLW 272

>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens} Length = 408

 Score = 73.8 bits (182), Expect = 5e-15
 Identities = 31/170 (18%), Positives = 59/170 (34%), Gaps = 34/170 (20%)

Query: 118 LWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFD------RRNLTS 171
           +       +    VE+ H   ++ +D  P++   +L+G +D  + ++D      +   T 
Sbjct: 27  VLGLE--LNKDRDVERIHGGGINTLDIEPVEGRYMLSGGSDGVIVLYDLENSSRQSYYTC 84

Query: 172 NGVGSPINK-FEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTN 230
             V S      + H  +V  VQW P  + +F SS+ D  L +WD              T 
Sbjct: 85  KAVCSIGRDHPDVHRYSVETVQWYPHDTGMFTSSSFDKTLKVWDTN------------TL 132

Query: 231 YPAGLFFQHAGHRDKV--VDFHWNASDPWTVVSVSDDCDSTGGGGTLQIW 278
             A +F       + V        ++    V   +           +Q+ 
Sbjct: 133 QTADVF----NFEETVYSHHMSPVSTKHCLVAVGTRG-------PKVQLC 171

>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens} Length = 408

 Score = 66.5 bits (163), Expect = 2e-12
 Identities = 42/242 (17%), Positives = 81/242 (33%), Gaps = 44/242 (18%)

Query: 2   EILTGHQDNAEFALAMCPTEPYVL-SGGKDKSVVLWSIQ---------DHITSSATDPAT 51
            IL GH+     A++  P   Y+L +   D  V LW ++         D      +    
Sbjct: 180 HILQGHRQEI-LAVSWSPRYDYILATASADSRVKLWDVRRASGCLITLDQHNGKKSQAVE 238

Query: 52  AKSAGSSGSI--IKQSPKPGDG-------NDK------AADG--PSVGPRGIYNGHEDTV 94
           + +   +G +  +  +    DG        D       +++G    V    + N  +  +
Sbjct: 239 SANTAHNGKVNGLCFTS---DGLHLLTVGTDNRMRLWNSSNGENTLVNYGKVCNNSKKGL 295

Query: 95  EDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILT 154
           +    C  S  EF  V   S + ++    G    I + K H   + C  +   +   + +
Sbjct: 296 KFTVSCGCS-SEFVFVPYGSTIAVYTVYSGE--QITMLKGHYKTVDCCVFQS-NFQELYS 351

Query: 155 GSADNSVRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWD 214
           GS D ++  +            P+             Q +P     + SS E+G  + W 
Sbjct: 352 GSRDCNILAWVPSL------YEPV---PDDDETTTKSQLNPAFEDAWSSSDEEGGTSAWS 402

Query: 215 YE 216
           + 
Sbjct: 403 HP 404

>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A* Length = 1249

 Score = 90.3 bits (224), Expect = 3e-20
 Identities = 35/275 (12%), Positives = 88/275 (32%), Gaps = 64/275 (23%)

Query: 4   LTGHQDNAEFALAMCPTEPYVLSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIK 63
           + GH ++        P +  + S   D ++ LW ++                  S +  K
Sbjct: 739 MFGHTNSV-NHCRFSPDDELLASCSADGTLRLWDVR------------------SANERK 779

Query: 64  QSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARV 123
                            +         E  V+  ++     +       +  L+      
Sbjct: 780 SIN---------VKRFFLSSEDPPEDVEVIVKCCSWSADGDK-IIVAAKNKVLLFDIHT- 828

Query: 124 GTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEG 183
            +  + ++   H + +   D++P  D+L +   +   V +++  +         +    G
Sbjct: 829 -SGLLAEIHTGHHSTIQYCDFSP-YDHLAVIALSQYCVELWNIDS------RLKVADCRG 880

Query: 184 HSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHR 243
           H + V  V +SPD  S F ++++D  + +W+        ++  + +             +
Sbjct: 881 HLSWVHGVMFSPD-GSSFLTASDDQTIRVWE-------TKKVCKNS--------AIVLKQ 924

Query: 244 DKVVDFHWNASDPWTVVSVSDDCDSTGGGGTLQIW 278
           +  V F     +   V++V +          LQ+ 
Sbjct: 925 EIDVVFQ---ENETMVLAVDNI-------RGLQLI 949

>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A* Length = 1249

 Score = 89.1 bits (221), Expect = 9e-20
 Identities = 54/299 (18%), Positives = 101/299 (33%), Gaps = 64/299 (21%)

Query: 2    EILTGHQDNAEFALAMCPTEPYVLSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSI 61
            +I    +        + P   YV  G +D ++ +  +         +   +   G   ++
Sbjct: 955  QIDYLPEAQV-SCCCLSPHLEYVAFGDEDGAIKIIELP-------NNRVFSSGVGHKKAV 1006

Query: 62   --IKQSPKPGDG-------NDK------AADGPSVGPRGIYNGHEDTVEDVTFCPSSAQE 106
              I+ +    DG        D          G  V        H++TV+D      S   
Sbjct: 1007 RHIQFTA---DGKTLISSSEDSVIQVWNWQTGDYVF----LQAHQETVKDFRLLQDS--R 1057

Query: 107  FCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDR 166
              S   D  + +W+   G   + +    H   +     +  D     + SAD + +++  
Sbjct: 1058 LLSWSFDGTVKVWNVITGR--IERDFTCHQGTVLSCAISS-DATKFSSTSADKTAKIWSF 1114

Query: 167  RNLTSNGVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQG- 225
                     SP+++ +GH+  V C  +S D   +  +  ++G + IW+       V  G 
Sbjct: 1115 DL------LSPLHELKGHNGCVRCSAFSLD-GILLATGDDNGEIRIWN-------VSDGQ 1160

Query: 226  PRTTNYPAGLFFQHAGHRDKV--VDFHWNASDPWTVVSVSDDCDSTGGGGTLQIWRMSD 282
               +  P  +    A H   V  V F     D  T+VS          GG L+ W ++ 
Sbjct: 1161 LLHSCAPISVEEGTATHGGWVTDVCFS---PDSKTLVS---------AGGYLKWWNVAT 1207

>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A* Length = 1249

 Score = 87.2 bits (216), Expect = 3e-19
 Identities = 57/317 (17%), Positives = 103/317 (32%), Gaps = 70/317 (22%)

Query: 1    MEILTGHQDNAEFALAMCPTEPYVLSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGS 60
             EI TGH           P +   +       V LW+I        +    A   G    
Sbjct: 833  AEIHTGHHSTI-QYCDFSPYDHLAVIALSQYCVELWNI-------DSRLKVADCRGHLSW 884

Query: 61   I--IKQSPKPGDG-------NDKAA---DGPSVGPRGIYNGHEDTVEDVTFCPSSAQEFC 108
            +  +  SP   DG       +D+     +   V              DV F  +      
Sbjct: 885  VHGVMFSP---DGSSFLTASDDQTIRVWETKKVCKNSA--IVLKQEIDVVFQENE-TMVL 938

Query: 109  SVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRN 168
            +V +   L L   + G     +++   +A + C   +P     +  G  D ++++ +  N
Sbjct: 939  AVDNIRGLQLIAGKTG-----QIDYLPEAQVSCCCLSP-HLEYVAFGDEDGAIKIIELPN 992

Query: 169  LTSNGVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRT 228
                      +   GH  AV  +Q++ D      SS+ED ++ +W+              
Sbjct: 993  ------NRVFSSGVGHKKAVRHIQFTAD-GKTLISSSEDSVIQVWN------------WQ 1033

Query: 229  TNYPAGLFFQHAGHRDKVVDFHWNASDPWTVVSVSDDCDSTGGGGTLQIWRMSDLIYRPQ 288
            T     L      H++ V DF         ++S S D       GT+++W +        
Sbjct: 1034 TGDYVFLQ----AHQETVKDFRLLQDS--RLLSWSFD-------GTVKVWNVIT------ 1074

Query: 289  DEVLAELEKFKAHVISC 305
              +  +    +  V+SC
Sbjct: 1075 GRIERDFTCHQGTVLSC 1091

>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A* Length = 1249

 Score = 86.0 bits (213), Expect = 9e-19
 Identities = 40/266 (15%), Positives = 83/266 (31%), Gaps = 59/266 (22%)

Query: 3   ILTGHQDNAEFALAMCPTEPYVLSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSII 62
           ++  H D   +          + S G DK++ ++              T +         
Sbjct: 610 VVRPHTDAV-YHACFSQDGQRIASCGADKTLQVF-----------KAETGE--------- 648

Query: 63  KQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDAR 122
                                      HED V    F         +   D  + +WD+ 
Sbjct: 649 --------------------KLLDIKAHEDEVLCCAFSSDD-SYIATCSADKKVKIWDSA 687

Query: 123 VGTSPVIKVEKAHDADLHCVDWNPLDDNLIL-TGSADNSVRMFDRRNLTSNGVGSPINKF 181
            G   ++     H   ++C  +    ++L+L TGS D  ++++D             N  
Sbjct: 688 TGK--LVHTYDEHSEQVNCCHFTNKSNHLLLATGSNDFFLKLWDLNQ------KECRNTM 739

Query: 182 EGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAG 241
            GH+ +V   ++SPD   +  S + DG L +WD      + +       + +        
Sbjct: 740 FGHTNSVNHCRFSPD-DELLASCSADGTLRLWDVRS-ANERKSINVKRFFLSSEDPPE-D 796

Query: 242 HRDKV--VDFHWNASDPWTVVSVSDD 265
               V    +   ++D   ++  + +
Sbjct: 797 VEVIVKCCSW---SADGDKIIVAAKN 819

>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A* Length = 1249

 Score = 84.5 bits (209), Expect = 2e-18
 Identities = 52/257 (20%), Positives = 87/257 (33%), Gaps = 50/257 (19%)

Query: 41  HITSSATDPATAKSAGSSGSIIK-------QSPKPGDGNDKAADGPSVGP-----RGIYN 88
           H+      P   +         +       Q+ + GD      +  +        R +  
Sbjct: 553 HLLGRQPFPNIVQLGLCEPETSEVYRQAKLQAKQEGDTGRLYLEWINKKTIKNLSRLVVR 612

Query: 89  GHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLD 148
            H D V    F     Q   S G D  L ++ A  G    +   KAH+ ++ C  ++  D
Sbjct: 613 PHTDAVYHACFSQDG-QRIASCGADKTLQVFKAETGE--KLLDIKAHEDEVLCCAFSS-D 668

Query: 149 DNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWSPD-KSSVFGSSAED 207
           D+ I T SAD  V+++D         G  ++ ++ HS  V C  ++      +  + + D
Sbjct: 669 DSYIATCSADKKVKIWDSAT------GKLVHTYDEHSEQVNCCHFTNKSNHLLLATGSND 722

Query: 208 GLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKV--VDFHWNASDPWTVVSVSDD 265
             L +WD                      F   GH + V    F     D   + S S D
Sbjct: 723 FFLKLWDLN------------QKECRNTMF---GHTNSVNHCRFS---PDDELLASCSAD 764

Query: 266 CDSTGGGGTLQIWRMSD 282
                  GTL++W +  
Sbjct: 765 -------GTLRLWDVRS 774

>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A* Length = 1249

 Score = 80.6 bits (199), Expect = 5e-17
 Identities = 49/285 (17%), Positives = 83/285 (29%), Gaps = 80/285 (28%)

Query: 4   LTGHQDNAEFALAMCPTEPYVLSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIK 63
           +  H+D      A    + Y+ +   DK V +W           D AT K          
Sbjct: 653 IKAHEDEV-LCCAFSSDDSYIATCSADKKVKIW-----------DSATGK---------- 690

Query: 64  QSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQEF-CSVGDDSCLILWDAR 122
                                  Y+ H + V    F   S      +  +D  L LWD  
Sbjct: 691 -------------------LVHTYDEHSEQVNCCHFTNKSNHLLLATGSNDFFLKLWDLN 731

Query: 123 VGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFD-------RRNLTSNGVG 175
                       H   ++   ++P DD L+ + SAD ++R++D       +         
Sbjct: 732 QKE--CRNTMFGHTNSVNHCRFSP-DDELLASCSADGTLRLWDVRSANERKSINVKRFFL 788

Query: 176 SPINKFEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGL 235
           S  +  E     V C  WS D       +A++ +L ++D       + +           
Sbjct: 789 SSEDPPEDVEVIVKCCSWSAD-GDKIIVAAKNKVL-LFDIHT-SGLLAE----------- 834

Query: 236 FFQHAGHRDKV--VDFHWNASDPWTVVSVSDDCDSTGGGGTLQIW 278
              H GH   +   DF          V              +++W
Sbjct: 835 --IHTGHHSTIQYCDFS---PYDHLAVIALSQ-------YCVELW 867

>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A* Length = 1249

 Score = 76.0 bits (187), Expect = 2e-15
 Identities = 37/279 (13%), Positives = 73/279 (26%), Gaps = 84/279 (30%)

Query: 2    EILTGHQDNAEFALAMCPTEPYVLSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSI 61
            +         E  +     E  VL+    + + L +                  G +G I
Sbjct: 916  KNSAIVL-KQEIDVVFQENETMVLAVDNIRGLQLIA------------------GKTGQI 956

Query: 62   IKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDA 121
                                         E  V      P   +      +D  + + + 
Sbjct: 957  DY-------------------------LPEAQVSCCCLSPHL-EYVAFGDEDGAIKIIEL 990

Query: 122  RVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKF 181
                  V      H   +  + +   D   +++ S D+ +++++ +       G  +   
Sbjct: 991  PNNR--VFSSGVGHKKAVRHIQFTA-DGKTLISSSEDSVIQVWNWQT------GDYVF-L 1040

Query: 182  EGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAG 241
            + H   V   +   D   +  S + DG + +W+       V  G         +      
Sbjct: 1041 QAHQETVKDFRLLQDSRLL--SWSFDGTVKVWN-------VITG--------RIERDFTC 1083

Query: 242  HRDKV--VDFHWNASDPWTVVSVSDDCDSTGGGGTLQIW 278
            H+  V         SD     S S D        T +IW
Sbjct: 1084 HQGTVLSCAIS---SDATKFSSTSAD-------KTAKIW 1112

>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A* Length = 1249

 Score = 71.0 bits (174), Expect = 7e-14
 Identities = 29/221 (13%), Positives = 55/221 (24%), Gaps = 59/221 (26%)

Query: 1    MEILTGHQDNAEFALAMCPTEPYVLSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGS 60
                T HQ     + A+        S   DK+  +W                        
Sbjct: 1078 ERDFTCHQGTV-LSCAISSDATKFSSTSADKTAKIW-----------SFDLLS------- 1118

Query: 61   IIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQEFCSVGDDSCLILWD 120
                                  P     GH   V    F         +  D+  + +W+
Sbjct: 1119 ----------------------PLHELKGHNGCVRCSAFSLDGIL-LATGDDNGEIRIWN 1155

Query: 121  ARVGT-------SPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNG 173
               G          V +    H   +  V ++P D   +++      ++ ++        
Sbjct: 1156 VSDGQLLHSCAPISVEEGTATHGGWVTDVCFSP-DSKTLVSAG--GYLKWWNVAT----- 1207

Query: 174  VGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWD 214
             G     F  +   +  +  SPD    + +    G+L I  
Sbjct: 1208 -GDSSQTFYTNGTNLKKIHVSPD-FRTYVTVDNLGILYILQ 1246

>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe} Length = 377

 Score = 88.3 bits (219), Expect = 4e-20
 Identities = 28/195 (14%), Positives = 61/195 (31%), Gaps = 29/195 (14%)

Query: 86  IYNGHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWN 145
           + +       +  F      EF +    + + L++         +    HD  + CVDW 
Sbjct: 6   VLHILPKPSYEHAFNSQR-TEFVTTTATNQVELYEQDGNGWKHARTFSDHDKIVTCVDWA 64

Query: 146 PLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSA 205
           P   N I+T S D +  +++      +G           + A   V+WSP+    F   +
Sbjct: 65  P-KSNRIVTCSQDRNAYVYE---KRPDGTWKQTLVLLRLNRAATFVRWSPN-EDKFAVGS 119

Query: 206 EDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKV--VDFHWNASDPWTVVSVS 263
              ++++  +E+                         R  +  +D+H    +   + +  
Sbjct: 120 GARVISVCYFEQENDWWVSKHLKR-----------PLRSTILSLDWH---PNNVLLAAGC 165

Query: 264 DDCDSTGGGGTLQIW 278
            D           + 
Sbjct: 166 AD-------RKAYVL 173

>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe} Length = 377

 Score = 65.5 bits (160), Expect = 3e-12
 Identities = 24/253 (9%), Positives = 70/253 (27%), Gaps = 45/253 (17%)

Query: 1   MEILTGHQDNAEFALAMCPTEPYVLSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGS 60
               + H D     +   P    +++  +D++  ++  +       T   T      + +
Sbjct: 48  ARTFSDH-DKIVTCVDWAPKSNRIVTCSQDRNAYVYEKR----PDGTWKQTLVLLRLNRA 102

Query: 61  I--IKQSPKPGDGN--------------DKAADGPSVGPRGIYNGHEDTVEDVTFCPSSA 104
              ++ SP   + +                  +      + +      T+  + + P++ 
Sbjct: 103 ATFVRWSP---NEDKFAVGSGARVISVCYFEQENDWWVSKHLKRPLRSTILSLDWHPNNV 159

Query: 105 QEFCSVGDDSCLILWDARVG---------------TSPVIKVEKAHDADLHCVDWNPLDD 149
               +   D    +  A V                    +  E      +H V ++P   
Sbjct: 160 L-LAAGCADRKAYVLSAYVRDVDAKPEASVWGSRLPFNTVCAEYPSGGWVHAVGFSP-SG 217

Query: 150 NLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAEDGL 209
           N +     D+SV +              +   +     +  + W+ + + V  ++  +  
Sbjct: 218 NALAYAGHDSSVTIAYPS--APEQPPRALITVKLSQLPLRSLLWANESAIV--AAGYNYS 273

Query: 210 LNIWDYEKVGKKV 222
             +    + G   
Sbjct: 274 PILLQGNESGWAH 286

>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe} Length = 377

 Score = 54.0 bits (130), Expect = 2e-08
 Identities = 28/239 (11%), Positives = 62/239 (25%), Gaps = 30/239 (12%)

Query: 3   ILTGHQDNAEFALAMCPTEPYVLSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSII 62
           +    +     +L   P    + +G  D+   + S       +  + +   S     ++ 
Sbjct: 141 LKRPLRSTI-LSLDWHPNNVLLAAGCADRKAYVLSAYVRDVDAKPEASVWGSRLPFNTVC 199

Query: 63  KQSPKPG---------DGN--------------DKAADGPSVGPRGIYNGHEDTVEDVTF 99
            + P  G          GN                +A              +  +  + +
Sbjct: 200 AEYPSGGWVHAVGFSPSGNALAYAGHDSSVTIAYPSAPEQPPRALITVKLSQLPLRSLLW 259

Query: 100 CPSSAQEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADN 159
              S     + G +   IL           +   A  +           +     G    
Sbjct: 260 ANES--AIVAAGYNYSPILLQGNESGWAHTRDLDAGTSKTSFTHTGNTGEGREEEGPVSF 317

Query: 160 SVRMFDRRNLTSNGVGSPINKFEG-HSAAVLCVQW-SPDKSSV--FGSSAEDGLLNIWD 214
           +      RN+   G    I+     H   +  ++  +    ++  F SS  DG + +W 
Sbjct: 318 TALRSTFRNMDLKGSSQSISSLPTVHQNMIATLRPYAGTPGNITAFTSSGTDGRVVLWT 376

>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens} Length = 357

 Score = 87.0 bits (216), Expect = 1e-19
 Identities = 39/293 (13%), Positives = 91/293 (31%), Gaps = 54/293 (18%)

Query: 2   EILTGHQD-----NAEFALAMCPTEPYVLSGGKDKSVVLWSIQDHITSSATDPATAKSAG 56
             + GH++     +    L +    P +++G +D +V +W  +                 
Sbjct: 105 YSVKGHKEIINAIDGIGGLGIGEGAPEIVTGSRDGTVKVWDPR----------------- 147

Query: 57  SSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQEFCSVGDDSCL 116
                   + +P  G +K                        +     +  C+  D+  +
Sbjct: 148 -QKDDPVANMEPVQGENKR-------------DCWTVAFGNAYNQEE-RVVCAGYDNGDI 192

Query: 117 ILWDARVGTSPVIKVEKAHDADLHCVDWNP--LDDNLILTGSADNSVRMFDRRNLTSNGV 174
            L+D R      ++ E      +  ++++   +  N ++  S +    +FD R       
Sbjct: 193 KLFDLRNMA---LRWETNIKNGVCSLEFDRKDISMNKLVATSLEGKFHVFDMRTQHPTK- 248

Query: 175 GSPINKFEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAG 234
           G      + H + V  V+  P    +F ++   G L++W YE   ++ ++          
Sbjct: 249 GFASVSEKAHKSTVWQVRHLPQNRELFLTAGGAGGLHLWKYEYPIQRSKKDSEGIEMGVA 308

Query: 235 LFFQH----AGHRDKVVDFHWNASDPWTVVSVSDDCDSTGGGGTLQIWRMSDL 283
                          +    W+       V  S D        T+++  ++ L
Sbjct: 309 GSVSLLQNVTLSTQPISSLDWSPDKRGLCVCSSFD-------QTVRVLIVTKL 354

>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens} Length = 357

 Score = 74.7 bits (184), Expect = 2e-15
 Identities = 34/239 (14%), Positives = 63/239 (26%), Gaps = 63/239 (26%)

Query: 1   MEILTGHQDNAE----FALAMCPTEPYVLSGGKDKSVVLWSIQDHITSSATDPATAKSAG 56
           ME + G          F  A    E  V +G  +  + L+           D        
Sbjct: 156 MEPVQGENKRDCWTVAFGNAYNQEERVVCAGYDNGDIKLF-----------DLRNMALRW 204

Query: 57  SSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCP--SSAQEFCSVGDDS 114
            +                                ++ V  + F     S  +  +   + 
Sbjct: 205 ET------------------------------NIKNGVCSLEFDRKDISMNKLVATSLEG 234

Query: 115 CLILWDARVGTSP---VIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRN--- 168
              ++D R            EKAH + +  V   P +  L LT      + ++       
Sbjct: 235 KFHVFDMRTQHPTKGFASVSEKAHKSTVWQVRHLPQNRELFLTAGGAGGLHLWKYEYPIQ 294

Query: 169 ----------LTSNGVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEK 217
                     +   G  S +      +  +  + WSPDK  +   S+ D  + +    K
Sbjct: 295 RSKKDSEGIEMGVAGSVSLLQNVTLSTQPISSLDWSPDKRGLCVCSSFDQTVRVLIVTK 353

>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens} Length = 357

 Score = 68.2 bits (167), Expect = 3e-13
 Identities = 32/206 (15%), Positives = 70/206 (33%), Gaps = 42/206 (20%)

Query: 89  GHEDTVEDVTFCPSSAQEFCSVG----DDSCLILWDARVGTSPVIKVEKAHDADLHCVDW 144
           G   TV D  + P SA+ F ++G        + L++ + G   +++ E      + C  +
Sbjct: 16  GFNYTVFDCKWVPCSAK-FVTMGNFARGTGVIQLYEIQHGDLKLLR-EIEKAKPIKCGTF 73

Query: 145 NP--LDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQW------SPD 196
               L    + TG    ++ +++           P+   +GH   +  +           
Sbjct: 74  GATSLQQRYLATGDFGGNLHIWN----LEAP-EMPVYSVKGHKEIINAIDGIGGLGIGEG 128

Query: 197 KSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKV---VDFHWNA 253
              +  + + DG + +WD           PR  + P        G   +    V F    
Sbjct: 129 APEIV-TGSRDGTVKVWD-----------PRQKDDPVANMEPVQGENKRDCWTVAFGNAY 176

Query: 254 S-DPWTVVSVSDDCDSTGGGGTLQIW 278
           + +   V +  D+       G ++++
Sbjct: 177 NQEERVVCAGYDN-------GDIKLF 195

>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens} Length = 357

 Score = 41.2 bits (97), Expect = 3e-04
 Identities = 25/187 (13%), Positives = 61/187 (32%), Gaps = 45/187 (24%)

Query: 127 PVIKVEKAHDADLHCVDWNPLDDNLILT----GSADNSVRMFDRRNLTSNGVGSPINKFE 182
            +  ++K  +  +    W P      +T          +++++ ++     +     +  
Sbjct: 9   IIAHIQKGFNYTVFDCKWVP-CSAKFVTMGNFARGTGVIQLYEIQHGDLKLL-----REI 62

Query: 183 GHSAAVLCVQ---WSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQH 239
             +  + C      S        +    G L+IW+ E   +      +            
Sbjct: 63  EKAKPIKCGTFGATSLQ-QRYLATGDFGGNLHIWNLEA-PEMPVYSVK------------ 108

Query: 240 AGHRDKV--VDFHWNAS---DPWTVVSVSDDCDSTGGGGTLQIWRMSDLIYRPQDEVLAE 294
            GH++ +  +D             +V+ S D       GT+++W   D   R +D+ +A 
Sbjct: 109 -GHKEIINAIDGIGGLGIGEGAPEIVTGSRD-------GTVKVW---DP--RQKDDPVAN 155

Query: 295 LEKFKAH 301
           +E  +  
Sbjct: 156 MEPVQGE 162

>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B* Length = 435

 Score = 87.0 bits (216), Expect = 2e-19
 Identities = 38/278 (13%), Positives = 75/278 (26%), Gaps = 72/278 (25%)

Query: 4   LTGHQDNAEFALAMCPTEP-YVLSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSII 62
                  A  +LA  PT P  V  G K   ++LW           +              
Sbjct: 115 AAPFDRRA-TSLAWHPTHPSTVAVGSKGGDIMLW-----------NFGIK---------- 152

Query: 63  KQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDAR 122
                         D P+        G   ++  + F P +  +F +   +    L D +
Sbjct: 153 --------------DKPTFIK---GIGAGGSITGLKFNPLNTNQFYASSMEGTTRLQDFK 195

Query: 123 VGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFE 182
                V       +     +D +     +++TG    +V + +         G  +    
Sbjct: 196 GNILRVFASSDTINIWFCSLDVSA-SSRMVVTGDNVGNVILLNMD-------GKELWNLR 247

Query: 183 GHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGH 242
            H   V  V  +P       +++ D  + IWD                     F     H
Sbjct: 248 MHKKKVTHVALNPCCDWFLATASVDQTVKIWDLR------------QVRGKASFLYSLPH 295

Query: 243 RDKV--VDFHWNASDPWTVVSVSDDCDSTGGGGTLQIW 278
           R  V    F  + +    +++             ++++
Sbjct: 296 RHPVNAACFSPDGA---RLLTTDQK-------SEIRVY 323

>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B* Length = 435

 Score = 84.0 bits (208), Expect = 2e-18
 Identities = 29/245 (11%), Positives = 68/245 (27%), Gaps = 43/245 (17%)

Query: 34  VLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDT 93
           ++ ++  H    A+ P+  +      S +                 S          +  
Sbjct: 77  IVRTLHQHKLGRASWPSVQQGL--QQSFLH-------------TLDSYRILQKAAPFDRR 121

Query: 94  VEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLIL 153
              + + P+             ++LW+  +   P           +  + +NPL+ N   
Sbjct: 122 ATSLAWHPTHPSTVAVGSKGGDIMLWNFGIKDKPTFIKGIGAGGSITGLKFNPLNTNQFY 181

Query: 154 TGSADNSVRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIW 213
             S + + R+ D        +       +  +     +  S   S +  +    G + + 
Sbjct: 182 ASSMEGTTRLQD----FKGNILRVFASSDTINIWFCSLDVSAS-SRMVVTGDNVGNVILL 236

Query: 214 DYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKVVDFHWNASDPWTVVSVSDDCDSTGGGG 273
           +       ++                  H+ KV     N    W + + S D        
Sbjct: 237 N-------MDGKELWN---------LRMHKKKVTHVALNPCCDWFLATASVD-------Q 273

Query: 274 TLQIW 278
           T++IW
Sbjct: 274 TVKIW 278

>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A Length = 611

 Score = 87.3 bits (217), Expect = 2e-19
 Identities = 58/305 (19%), Positives = 96/305 (31%), Gaps = 76/305 (24%)

Query: 2   EILTGHQDNAEFALAMCPTEPYVLSGGKDKSVVLWSI--------------QDHITSSAT 47
           EI T H           P+  Y  SG    +V +W                   +   + 
Sbjct: 53  EIYTEHSHQT-TVAKTSPSGYYCASGDVHGNVRIWDTTQTTHILKTTIPVFSGPVKDISW 111

Query: 48  DP-----ATAKSAGSSGSIIKQSPKPGDGNDK------AADGPSVGPRGIYNGHEDTVED 96
           D      A                  G+G ++         G S G      G    +  
Sbjct: 112 DSESKRIAAV----------------GEGRERFGHVFLFDTGTSNGN---LTGQARAMNS 152

Query: 97  VTFCPSSAQEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGS 156
           V F PS      S  DD+ + +++              H   +H V +NP D +L  +  
Sbjct: 153 VDFKPSRPFRIISGSDDNTVAIFEGPPFK--FKSTFGEHTKFVHSVRYNP-DGSLFASTG 209

Query: 157 ADNSVRMFDRRNLTSNGV-GSPINKFEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDY 215
            D ++ +++  + T  GV      K   HS +V  + WSPD  +   S++ D  + IW+ 
Sbjct: 210 GDGTIVLYNGVDGTKTGVFEDDSLKNVAHSGSVFGLTWSPD-GTKIASASADKTIKIWNV 268

Query: 216 EKVGKKVEQGPRTTNYPAGLFFQHAGHRDKV--VDFHWNASDPWTVVSVSDDCDSTGGGG 273
                KVE+                G R +   +   W       +VS+S +       G
Sbjct: 269 A--TLKVEKTIPV------------GTRIEDQQLGIIW---TKQALVSISAN-------G 304

Query: 274 TLQIW 278
            +   
Sbjct: 305 FINFV 309

>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A Length = 611

 Score = 78.4 bits (194), Expect = 2e-16
 Identities = 40/303 (13%), Positives = 80/303 (26%), Gaps = 74/303 (24%)

Query: 4   LTGHQDNAEFALAMCPTEPYVLSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIK 63
              H      ++   P      S G D ++VL++                  G  G+   
Sbjct: 186 FGEHTKFV-HSVRYNPDGSLFASTGGDGTIVLYN------------------GVDGTKTG 226

Query: 64  QSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARV 123
                                     H  +V  +T+ P   +   S   D  + +W+   
Sbjct: 227 VFE---------------DDSLKNVAHSGSVFGLTWSPDGTK-IASASADKTIKIWNVAT 270

Query: 124 GTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEG 183
                  +      +   +         +++ SA+  +   +         GS      G
Sbjct: 271 LK-VEKTIPVGTRIEDQQLGIIW-TKQALVSISANGFINFVNPEL------GSIDQVRYG 322

Query: 184 HSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHR 243
           H+ A+  +  S D  ++F S+  +G +N WD              T     +F     H 
Sbjct: 323 HNKAITALSSSADGKTLF-SADAEGHINSWDIS------------TGISNRVFPD--VHA 367

Query: 244 DKVVDFHWNASDPWTVVSVSDDCD--STGGGGTLQIWRMSDLIYRPQDEVLAELEKFKAH 301
             +           T +  +   D  +      L++           D   A   K  + 
Sbjct: 368 TMI-----------TGIKTTSKGDLFTVSWDDHLKVV---PAGGSGVDSSKAVANKLSSQ 413

Query: 302 VIS 304
            + 
Sbjct: 414 PLG 416

>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A Length = 611

 Score = 78.4 bits (194), Expect = 2e-16
 Identities = 44/284 (15%), Positives = 84/284 (29%), Gaps = 84/284 (29%)

Query: 4   LTGHQDNAEFALAMCPTEPYVL-SGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSII 62
           LTG       ++   P+ P+ + SG  D +V ++           +    K         
Sbjct: 143 LTGQARAM-NSVDFKPSRPFRIISGSDDNTVAIF-----------EGPPFK--------F 182

Query: 63  KQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDAR 122
           K +                        H   V  V + P  +  F S G D  ++L++  
Sbjct: 183 KSTFG---------------------EHTKFVHSVRYNPDGSL-FASTGGDGTIVLYNGV 220

Query: 123 VGT-----SPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSP 177
            GT             AH   +  + W+P D   I + SAD ++++++            
Sbjct: 221 DGTKTGVFEDDSLKNVAHSGSVFGLTWSP-DGTKIASASADKTIKIWNVAT------LKV 273

Query: 178 INKFE-GHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLF 236
                 G       +     K ++  S + +G +N  +           P   +      
Sbjct: 274 EKTIPVGTRIEDQQLGIIWTKQALV-SISANGFINFVN-----------PELGSIDQVR- 320

Query: 237 FQHAGHRDKV--VDFHWNASDPWTVVSVSDDCDSTGGGGTLQIW 278
               GH   +  +      +D  T+ S   +       G +  W
Sbjct: 321 ---YGHNKAITALSSS---ADGKTLFSADAE-------GHINSW 351

>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A Length = 611

 Score = 75.7 bits (187), Expect = 2e-15
 Identities = 49/330 (14%), Positives = 88/330 (26%), Gaps = 85/330 (25%)

Query: 1   MEILTGHQDNAEFALAMCPTEPYVLSGGKDKSVVLWSIQ-------------DHITSSAT 47
            ++  GH      AL+       + S   +  +  W I                IT   T
Sbjct: 317 DQVRYGHNKAI-TALSSSADGKTLFSADAEGHINSWDISTGISNRVFPDVHATMITGIKT 375

Query: 48  DPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCP-----S 102
                    S    +K  P  G G D          + + N        +          
Sbjct: 376 TSKGDLFTVSWDDHLKVVPAGGSGVD--------SSKAVANKLSSQPLGLAVSADGDIAV 427

Query: 103 SA-------------------------------QEFCSVGDDSCLILWDARVGTSPVIKV 131
           +A                               Q     G DS + ++    G S     
Sbjct: 428 AACYKHIAIYSHGKLTEVPISYNSSCVALSNDKQFVAVGGQDSKVHVYKLS-GASVSEVK 486

Query: 132 EKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGHSAAVLCV 191
              H A++  V ++  +   ++       V  +    + +N   +  N +  H+A V CV
Sbjct: 487 TIVHPAEITSVAFSN-NGAFLVATDQSRKVIPYS---VANNFELAHTNSWTFHTAKVACV 542

Query: 192 QWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKVVDFHW 251
            WSPD +    + + D  + +W+  K                        H    V+   
Sbjct: 543 SWSPD-NVRLATGSLDNSVIVWNMNKPSDHPIIIKG-------------AHAMSSVNSVI 588

Query: 252 NASDPWTVVSVSDDCDSTGGGGTLQIWRMS 281
              +  T+VS   D         ++ W + 
Sbjct: 589 -WLNETTIVSAGQD-------SNIKFWNVP 610

>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C Length = 372

 Score = 85.8 bits (213), Expect = 3e-19
 Identities = 27/194 (13%), Positives = 63/194 (32%), Gaps = 30/194 (15%)

Query: 87  YNGHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNP 146
           ++   + +    +      +     ++  + +++        +   K H+  +  VDW P
Sbjct: 4   HSFLVEPISCHAWNKDR-TQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAP 62

Query: 147 LDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAE 206
            D N I+T   D +  ++            P       + A  CV+W+P+    F   + 
Sbjct: 63  -DSNRIVTCGTDRNAYVWT----LKGRTWKPTLVILRINRAARCVRWAPN-EKKFAVGSG 116

Query: 207 DGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKV--VDFHWNASDPWTVVSVSD 264
             +++I  +E+                         R  V  +D+H    +   + + S 
Sbjct: 117 SRVISICYFEQ-ENDWWVCKHIKK----------PIRSTVLSLDWH---PNSVLLAAGSC 162

Query: 265 DCDSTGGGGTLQIW 278
           D          +I+
Sbjct: 163 D-------FKCRIF 169

>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C Length = 372

 Score = 62.6 bits (153), Expect = 2e-11
 Identities = 35/249 (14%), Positives = 65/249 (26%), Gaps = 64/249 (25%)

Query: 3   ILTGHQDNAEFALAMCPTEPYVLSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSII 62
           I    +     +L   P    + +G  D    ++S           P    S    G ++
Sbjct: 137 IKKPIRSTV-LSLDWHPNSVLLAAGSCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELM 195

Query: 63  KQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDAR 122
            +                       +     V  V F  + ++    V  DS + L DA 
Sbjct: 196 FE----------------------SSSSCGWVHGVCFSANGSR-VAWVSHDSTVCLADAD 232

Query: 123 VGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVR-------------------- 162
                 +    +    L  V +   + +L+  G     V                     
Sbjct: 233 --KKMAVATLASETLPLLAVTFIT-ESSLVAAGHDCFPVLFTYDSAAGKLSFGGRLDVPK 289

Query: 163 -----------MF---DRRNLTSNGVGSPINKFEGHSAAVLCVQWSPD---KSSVFGSSA 205
                       F   D++  +     +       H  +V  +        K S F ++ 
Sbjct: 290 QSSQRGLTARERFQNLDKKASSEGSAAAGAGLDSLHKNSVSQISVLSGGKAKCSQFCTTG 349

Query: 206 EDGLLNIWD 214
            DG ++IWD
Sbjct: 350 MDGGMSIWD 358

>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C Length = 372

 Score = 61.9 bits (151), Expect = 5e-11
 Identities = 34/294 (11%), Positives = 77/294 (26%), Gaps = 66/294 (22%)

Query: 4   LTGHQDNAEFALAMCPTEPYVLSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSI-- 61
           L  H       +   P    +++ G D++  +W+++       T   T      + +   
Sbjct: 48  LKEHNGQV-TGVDWAPDSNRIVTCGTDRNAYVWTLKGR-----TWKPTLVILRINRAARC 101

Query: 62  IKQSPKPGDGN--------------DKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQEF 107
           ++ +P   +                    +      + I      TV  + + P+S    
Sbjct: 102 VRWAP---NEKKFAVGSGSRVISICYFEQENDWWVCKHIKKPIRSTVLSLDWHPNS-VLL 157

Query: 108 CSVGDDSCLILWDARVG-----TSPVIKVEKA-----------HDADLHCVDWNPLDDNL 151
            +   D    ++ A +       +P     K                +H V ++  + + 
Sbjct: 158 AAGSCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSA-NGSR 216

Query: 152 ILTGSADNSVRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAEDGLLN 211
           +   S D++V + D            +      +  +L V +  + S V        +L 
Sbjct: 217 VAWVSHDSTVCLADADK------KMAVATLASETLPLLAVTFITESSLVAAGHDCFPVLF 270

Query: 212 IWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKVVDFHWNASDPWTVVSVSDD 265
            +D          G  +            G  D                   D 
Sbjct: 271 TYD-------SAAGKLS----------FGGRLDVPKQSSQRGLTARERFQNLDK 307

>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A Length = 402

 Score = 85.5 bits (212), Expect = 5e-19
 Identities = 33/172 (19%), Positives = 61/172 (35%), Gaps = 22/172 (12%)

Query: 108 CSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFD-R 166
            S G    ++           + +   H A +  + W P +DN+I +GS D +V +++  
Sbjct: 53  ASGGGAFLVLPLGKTGRVDKNVPLVCGHTAPVLDIAWCPHNDNVIASGSEDCTVMVWEIP 112

Query: 167 RNLTSNGVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGP 226
                  +  P+   EGH+  V  V W P   +V  S+  D ++ +WD    G  V    
Sbjct: 113 DGGLVLPLREPVITLEGHTKRVGIVAWHPTAQNVLLSAGCDNVILVWDVGT-GAAVLT-- 169

Query: 227 RTTNYPAGLFFQHAGHRDKVVDFHWNASDPWTVVSVSDDCDSTGGGGTLQIW 278
                          H D +    W+  D   + +   D         +++ 
Sbjct: 170 ----------LGPDVHPDTIYSVDWSR-DGALICTSCRD-------KRVRVI 203

>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A Length = 402

 Score = 78.6 bits (194), Expect = 1e-16
 Identities = 39/201 (19%), Positives = 70/201 (34%), Gaps = 30/201 (14%)

Query: 89  GHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPVIKVE-----KAHDADLHCVD 143
           GH   V D+ +CP +     S  +D  +++W+   G   +   E     + H   +  V 
Sbjct: 79  GHTAPVLDIAWCPHNDNVIASGSEDCTVMVWEIPDGGLVLPLREPVITLEGHTKRVGIVA 138

Query: 144 WNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWSPDKSSVFGS 203
           W+P   N++L+   DN + ++D       G        + H   +  V WS D  ++  +
Sbjct: 139 WHPTAQNVLLSAGCDNVILVWD----VGTGAAVLTLGPDVHPDTIYSVDWSRD-GALICT 193

Query: 204 SAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRD-KVVDFHWNASDPWTVVSV 262
           S  D  + + +           PR     A     H G R    V      S+   + + 
Sbjct: 194 SCRDKRVRVIE-----------PRKGTVVAEKDRPHEGTRPVHAVF----VSEGKILTT- 237

Query: 263 SDDCDSTGGGGTLQIWRMSDL 283
                S      + +W    L
Sbjct: 238 ---GFSRMSERQVALWDTKHL 255

>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A Length = 402

 Score = 75.1 bits (185), Expect = 2e-15
 Identities = 47/280 (16%), Positives = 88/280 (31%), Gaps = 66/280 (23%)

Query: 4   LTGHQDNAEFALAMCPTEPYVL-SGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSII 62
           + GH       +A CP    V+ SG +D +V++W I D                      
Sbjct: 77  VCGHTAPV-LDIAWCPHNDNVIASGSEDCTVMVWEIPDGGLV------------------ 117

Query: 63  KQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDAR 122
                           P   P     GH   V  V + P++     S G D+ +++WD  
Sbjct: 118 ---------------LPLREPVITLEGHTKRVGIVAWHPTAQNVLLSAGCDNVILVWDVG 162

Query: 123 VGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFE 182
            G + +      H   ++ VDW+  D  LI T   D  VR+ + R       G+ + + +
Sbjct: 163 TGAAVLTLGPDVHPDTIYSVDWSR-DGALICTSCRDKRVRVIEPRK------GTVVAEKD 215

Query: 183 GH--SAAVLCVQWSPDKS--SVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQ 238
                   +   +  +    +   S   +  + +WD            +    P  L  Q
Sbjct: 216 RPHEGTRPVHAVFVSEGKILTTGFSRMSERQVALWDT-----------KHLEEPLSL--Q 262

Query: 239 HAGHRDKVVDFHWNASDPWTVVSVSDDCDSTGGGGTLQIW 278
                  V+   ++       +    D        +++ +
Sbjct: 263 ELDTSSGVLLPFFDPDTNIVYLCGKGD-------SSIRYF 295

>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A Length = 402

 Score = 71.6 bits (176), Expect = 3e-14
 Identities = 42/269 (15%), Positives = 85/269 (31%), Gaps = 68/269 (25%)

Query: 3   ILTGHQDNAEFALAMCPTEPYVL-SGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSI 61
            L GH       +A  PT   VL S G D  +++W           D  T  +  + G  
Sbjct: 126 TLEGHTKRV-GIVAWHPTAQNVLLSAGCDNVILVW-----------DVGTGAAVLTLG-- 171

Query: 62  IKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDA 121
                                     + H DT+  V +        C+   D  + + + 
Sbjct: 172 -------------------------PDVHPDTIYSVDWSRDG-ALICTSCRDKRVRVIEP 205

Query: 122 RVGTSPVIKVEKAHDADLHC-VDWNPLDDNLILTG---SADNSVRMFDRRNLTSNGVGSP 177
           R GT  V + ++ H+        +   +  ++ TG    ++  V ++D ++L       P
Sbjct: 206 RKGT-VVAEKDRPHEGTRPVHAVFVS-EGKILTTGFSRMSERQVALWDTKHL-----EEP 258

Query: 178 IN-KFEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLF 236
           ++ +    S+ VL   + PD + V+     D  +  ++              +  P   +
Sbjct: 259 LSLQELDTSSGVLLPFFDPDTNIVYLCGKGDSSIRYFEIT------------SEAPFLHY 306

Query: 237 FQHAGHRDKVVDFHWNASDPWTVVSVSDD 265
                 ++           P   + V+  
Sbjct: 307 LSMFSSKESQRGM---GYMPKRGLEVNKC 332

>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A Length = 615

 Score = 84.2 bits (209), Expect = 3e-18
 Identities = 50/295 (16%), Positives = 92/295 (31%), Gaps = 72/295 (24%)

Query: 4   LTGHQDNAEFALAMCPTEPY-VLSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSII 62
           ++GH      A  +  + P   ++ G D SVV +                K + S  +  
Sbjct: 156 VSGHSQRI-NACHLKQSRPMRSMTVGDDGSVVFY-----------QGPPFKFSASDRTHH 203

Query: 63  KQ---------SPKPGD-----GNDKAA---DGPSVGPRGIYNGHEDTVEDVTFCPSSA- 104
           KQ         SP  G+     G+D+     DG S          ++ V+   F  S   
Sbjct: 204 KQGSFVRDVEFSPDSGEFVITVGSDRKISCFDGKSGEFLKYIEDDQEPVQGGIFALSWLD 263

Query: 105 -QEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRM 163
            Q+F +VG D+ + +WD                     V      +  I++ S D ++  
Sbjct: 264 SQKFATVGADATIRVWDVTTSKCVQKWTLDKQQLGNQQVGVVATGNGRIISLSLDGTLNF 323

Query: 164 FDRRNLTSNGVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVE 223
           ++  +         +    GH+  +  +  +P       S + DG +  W    + +   
Sbjct: 324 YELGH------DEVLKTISGHNKGITALTVNP-----LISGSYDGRIMEWSSSSMHQ--- 369

Query: 224 QGPRTTNYPAGLFFQHAGHRDKVVDFHWNASDPWTVVSVSDDCDSTGGGGTLQIW 278
                             H + +V      S      S+S D        TL++ 
Sbjct: 370 -----------------DHSNLIVSLDN--SKAQEYSSISWD-------DTLKVN 398

>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A Length = 615

 Score = 83.4 bits (207), Expect = 5e-18
 Identities = 37/280 (13%), Positives = 79/280 (28%), Gaps = 64/280 (22%)

Query: 4   LTGHQDNAEFALAMCPTE--PYVLSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSI 61
            TGH  +    +   P +   Y+ SG +   V++W                K + S    
Sbjct: 59  FTGHGSSVVTTVKFSPIKGSQYLCSGDESGKVIVW-----------GWTFDKESNSVEVN 107

Query: 62  IKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQ-EFCSVGDDSCLILWD 120
           +K                       +      + D+++     +      G D+  +   
Sbjct: 108 VK---------------------SEFQVLAGPISDISWDFEGRRLCVVGEGRDNFGVFIS 146

Query: 121 ARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINK 180
              G S  +     H   ++            +T   D SV  +           +    
Sbjct: 147 WDSGNS--LGEVSGHSQRINACHLKQSRPMRSMTVGDDGSVVFYQ---GPPFKFSASDRT 201

Query: 181 FEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHA 240
                + V  V++SPD      +   D  ++ +D +  G+ ++              +  
Sbjct: 202 HHKQGSFVRDVEFSPDSGEFVITVGSDRKISCFDGKS-GEFLKY------------IE-- 246

Query: 241 GHRDKV--VDFHWNASDPWTVVSVSDDCDSTGGGGTLQIW 278
             ++ V    F  +  D     +V  D        T+++W
Sbjct: 247 DDQEPVQGGIFALSWLDSQKFATVGAD-------ATIRVW 279

>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A Length = 615

 Score = 79.2 bits (196), Expect = 1e-16
 Identities = 37/256 (14%), Positives = 71/256 (27%), Gaps = 69/256 (26%)

Query: 26  SGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRG 85
             G+D   V  S                    SG+                        G
Sbjct: 135 GEGRDNFGVFISW------------------DSGN----------------------SLG 154

Query: 86  IYNGHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGT-SPVIKVEKAHDADLHCVDW 144
             +GH   +       S      +VGDD  ++ +       S   +      + +  V++
Sbjct: 155 EVSGHSQRINACHLKQSRPMRSMTVGDDGSVVFYQGPPFKFSASDRTHHKQGSFVRDVEF 214

Query: 145 NPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWSPDK--SSVFG 202
           +P     ++T  +D  +  FD ++      G  +   E     V    ++     S  F 
Sbjct: 215 SPDSGEFVITVGSDRKISCFDGKS------GEFLKYIEDDQEPVQGGIFALSWLDSQKFA 268

Query: 203 SSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKVVDFHWNASDPWTVVSV 262
           +   D  + +WD             T+              ++ V      +    ++S+
Sbjct: 269 TVGADATIRVWD-----------VTTSKCVQKWTLDKQQLGNQQVGVVA--TGNGRIISL 315

Query: 263 SDDCDSTGGGGTLQIW 278
           S D       GTL  +
Sbjct: 316 SLD-------GTLNFY 324

>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A Length = 615

 Score = 70.0 bits (172), Expect = 1e-13
 Identities = 33/272 (12%), Positives = 79/272 (29%), Gaps = 64/272 (23%)

Query: 24  VLSGGKDKSVVLWSI-------QDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAA 76
             S   D ++ +  I       Q  + S+  D  TA    +   ++            + 
Sbjct: 386 YSSISWDDTLKVNGITKHEFGSQPKVASANNDGFTA-VLTNDDDLLILQ---------SF 435

Query: 77  DGPSVGPRGIYNGHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPVIKVEKAHD 136
            G  +  + +      +   ++     A             L D  V       ++    
Sbjct: 436 TGDII--KSVRLNSPGSAVSLSQNYV-AVGLEEGNTIQVFKLSDLEVSF----DLKTPLR 488

Query: 137 ADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPI-NKFEGHSAAVLCVQWSP 195
           A    +  +P  +  I  G     + ++D ++           +++   ++ +  + W P
Sbjct: 489 AKPSYISISP-SETYIAAGDVMGKILLYDLQS------REVKTSRWAFRTSKINAISWKP 541

Query: 196 DKSSVFG---------SSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKV 246
            +              + + D  + I+  ++   K+ +                 H+D V
Sbjct: 542 AEKGANEEEIEEDLVATGSLDTNIFIYSVKR-PMKIIKALN-------------AHKDGV 587

Query: 247 VDFHWNASDPWTVVSVSDDCDSTGGGGTLQIW 278
            +  W    P T+VS   D         ++ W
Sbjct: 588 NNLLW--ETPSTLVSSGAD-------ACIKRW 610

>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A Length = 615

 Score = 50.7 bits (122), Expect = 2e-07
 Identities = 17/173 (9%), Positives = 55/173 (31%), Gaps = 52/173 (30%)

Query: 2   EILTGHQDNAEFALAMCPTEPYVLSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSI 61
           ++ T  +      +++ P+E Y+ +G     ++L+ +Q                  S  +
Sbjct: 482 DLKTPLRA-KPSYISISPSETYIAAGDVMGKILLYDLQ------------------SREV 522

Query: 62  IKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQEFC---------SVGD 112
                                    +      +  +++ P+               +   
Sbjct: 523 K---------------------TSRWAFRTSKINAISWKPAEKGANEEEIEEDLVATGSL 561

Query: 113 DSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFD 165
           D+ + ++  +     +IK   AH   ++ + W     + +++  AD  ++ ++
Sbjct: 562 DTNIFIYSVKRP-MKIIKALNAHKDGVNNLLWET--PSTLVSSGADACIKRWN 611

>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A Length = 615

 Score = 50.3 bits (121), Expect = 4e-07
 Identities = 23/252 (9%), Positives = 57/252 (22%), Gaps = 59/252 (23%)

Query: 3   ILTGHQDNAEFALAMCPTEP---YVLSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSG 59
            +   Q+          +        + G D ++ +W +    TS      T        
Sbjct: 244 YIEDDQE-PVQGGIFALSWLDSQKFATVGADATIRVWDVT---TSKCVQKWTLDKQQLGN 299

Query: 60  SIIKQSPKPGD-----GNDKAA---DGPSVGPRGIYNGHEDTVEDVTFCPSSAQEFCSVG 111
             +               D      +          +GH   +  +T  P       S  
Sbjct: 300 QQVGVVATGNGRIISLSLDGTLNFYELGHDEVLKTISGHNKGITALTVNP-----LISGS 354

Query: 112 DDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTS 171
            D  ++ W +           + H   +  +D +        + S D+++++        
Sbjct: 355 YDGRIMEWSSSSM-------HQDHSNLIVSLDNS--KAQEYSSISWDDTLKVNGITKHEF 405

Query: 172 NGV----------------------------GSPINKFEGHS-AAVLCVQWSPDKSSVFG 202
                                          G  I     +S  + + +  +   +    
Sbjct: 406 GSQPKVASANNDGFTAVLTNDDDLLILQSFTGDIIKSVRLNSPGSAVSLSQNYV-AVGLE 464

Query: 203 SSAEDGLLNIWD 214
                 +  + D
Sbjct: 465 EGNTIQVFKLSD 476

>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae} Length = 330

 Score = 79.6 bits (197), Expect = 4e-17
 Identities = 45/299 (15%), Positives = 94/299 (31%), Gaps = 48/299 (16%)

Query: 4   LTGHQDNAEFALAMCPTEPYVLSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSI-- 61
            T H+     ++A  P    + +G  D +V +W+ ++    +      A   G    +  
Sbjct: 54  ETAHKKAI-RSVAWRPHTSLLAAGSFDSTVSIWAKEESADRTFEMDLLAIIEGHENEVKG 112

Query: 62  IKQSPKPGDGN-------DK------AADGPSVG-PRGIYNGHEDTVEDVTFCPSSAQEF 107
           +  S    DG        DK        +         +   H   V+ V + PS     
Sbjct: 113 VAWSN---DGYYLATCSRDKSVWIWETDESGEEYECISVLQEHSQDVKHVIWHPSE-ALL 168

Query: 108 CSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNL--ILTGSADNSVRMFD 165
            S   D  + +W         + V   H+  +   D++   + +  + +GS D++VR++ 
Sbjct: 169 ASSSYDDTVRIWKDYDDDWECVAVLNGHEGTVWSSDFDK-TEGVFRLCSGSDDSTVRVWK 227

Query: 166 RRNLTSNGVGSPI---NKFEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKV 222
                 +     +      + H   V  V W  +   +  S   DG+L +++        
Sbjct: 228 YMGDDEDDQQEWVCEAILPDVHKRQVYNVAWGFN--GLIASVGADGVLAVYE-------- 277

Query: 223 EQGPRTTNYPAGLFFQHAGHRDKVVDFHWNASDPWTV-VSVSDDCDSTGGGGTLQIWRM 280
                   +             ++    W   +  T+  +  DD       G +  W +
Sbjct: 278 ---EVDGEWKVFAKRALCHGVYEINVVKWLELNGKTILATGGDD-------GIVNFWSL 326

>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae} Length = 330

 Score = 79.2 bits (196), Expect = 5e-17
 Identities = 44/283 (15%), Positives = 88/283 (31%), Gaps = 72/283 (25%)

Query: 4   LTGHQDNAEFALAMCPTEPYVLSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIK 63
           L  +++   ++         + +G  D+ + L                            
Sbjct: 10  LKLYKEKI-WSFDFSQG--ILATGSTDRKIKLV--------------------------- 39

Query: 64  QSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARV 123
                        D  ++        H+  +  V + P +     +   DS + +W    
Sbjct: 40  ---------SVKYDDFTLIDVLDETAHKKAIRSVAWRPHT-SLLAAGSFDSTVSIWAKEE 89

Query: 124 GTSPVIKVE-----KAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPI 178
                 +++     + H+ ++  V W+  D   + T S D SV +++     S      I
Sbjct: 90  SADRTFEMDLLAIIEGHENEVKGVAWSN-DGYYLATCSRDKSVWIWETD--ESGEEYECI 146

Query: 179 NKFEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQ 238
           +  + HS  V  V W P ++ +  SS+ D  + IW  +                      
Sbjct: 147 SVLQEHSQDVKHVIWHPSEALLA-SSSYDDTVRIWK-DYDDDWECVAVLN---------- 194

Query: 239 HAGHRDKV--VDFHWNASDPWTVVSVSDDCDSTGGGGTLQIWR 279
             GH   V   DF       + + S SDD        T+++W+
Sbjct: 195 --GHEGTVWSSDFDKT-EGVFRLCSGSDD-------STVRVWK 227

>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae} Length = 330

 Score = 74.2 bits (183), Expect = 3e-15
 Identities = 27/138 (19%), Positives = 47/138 (34%), Gaps = 13/138 (9%)

Query: 88  NGHEDTVEDVTFCP-SSAQEFCSVGDDSCLILWDARVGTS-------PVIKVEKAHDADL 139
           NGHE TV    F         CS  DDS + +W                  +   H   +
Sbjct: 194 NGHEGTVWSSDFDKTEGVFRLCSGSDDSTVRVWKYMGDDEDDQQEWVCEAILPDVHKRQV 253

Query: 140 HCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQW-SPDKS 198
           + V W    + LI +  AD  + +++                      +  V+W   +  
Sbjct: 254 YNVAWGF--NGLIASVGADGVLAVYEEV--DGEWKVFAKRALCHGVYEINVVKWLELNGK 309

Query: 199 SVFGSSAEDGLLNIWDYE 216
           ++  +  +DG++N W  E
Sbjct: 310 TILATGGDDGIVNFWSLE 327

>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae} Length = 330

 Score = 68.4 bits (168), Expect = 3e-13
 Identities = 37/199 (18%), Positives = 67/199 (33%), Gaps = 31/199 (15%)

Query: 89  GHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPV--IKVEKAHDADLHCVDWNP 146
            +++ +    F         +   D  + L   +     +  +  E AH   +  V W P
Sbjct: 12  LYKEKIWSFDFSQGI---LATGSTDRKIKLVSVKYDDFTLIDVLDETAHKKAIRSVAWRP 68

Query: 147 LDDNLILTGSADNSVRMFDRRNLTSNGVGSPINK-FEGHSAAVLCVQWSPDKSSVFGSSA 205
              +L+  GS D++V ++ +           +    EGH   V  V WS D      + +
Sbjct: 69  -HTSLLAAGSFDSTVSIWAKEESADRTFEMDLLAIIEGHENEVKGVAWSND-GYYLATCS 126

Query: 206 EDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKV--VDFHWNASDPWTVVSVS 263
            D  + IW+        ++        + L      H   V  V +H        + S S
Sbjct: 127 RDKSVWIWE-------TDESGEEYECISVL----QEHSQDVKHVIWH---PSEALLASSS 172

Query: 264 DDCDSTGGGGTLQIWRMSD 282
            D        T++IW+  D
Sbjct: 173 YD-------DTVRIWKDYD 184

>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae} Length = 330

 Score = 57.6 bits (140), Expect = 1e-09
 Identities = 26/162 (16%), Positives = 60/162 (37%), Gaps = 34/162 (20%)

Query: 123 VGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFE 182
           + +  +IK  K +   +   D++     ++ TGS D  +++   +    +     +    
Sbjct: 1   MASINLIKSLKLYKEKIWSFDFSQ---GILATGSTDRKIKLVSVK--YDDFTLIDVLDET 55

Query: 183 GHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHA-- 240
            H  A+  V W P  +S+  + + D  ++IW             +  +            
Sbjct: 56  AHKKAIRSVAWRPH-TSLLAAGSFDSTVSIWA------------KEESADRTFEMDLLAI 102

Query: 241 --GHRDKV--VDFHWNASDPWTVVSVSDDCDSTGGGGTLQIW 278
             GH ++V  V +   ++D + + + S D        ++ IW
Sbjct: 103 IEGHENEVKGVAW---SNDGYYLATCSRD-------KSVWIW 134

>3jro_A Fusion protein of protein transport protein SEC13 and nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, ER-golgi transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae} Length = 753

 Score = 80.4 bits (198), Expect = 5e-17
 Identities = 42/310 (13%), Positives = 87/310 (28%), Gaps = 60/310 (19%)

Query: 3   ILTGHQDNAEFALAMCPTEPYVLSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSI- 61
           I   H +       +      + +   DK++ ++ ++       T        G  G + 
Sbjct: 4   IANAHNELI-HDAVLDYYGKRLATCSSDKTIKIFEVE-----GETHKLIDTLTGHEGPVW 57

Query: 62  -IKQSPKPGDGN-------DKA-----ADGPSVGPRGIYNGHEDTVEDVTFCPSSA-QEF 107
            +  +     G        D        +        ++  H  +V  V + P       
Sbjct: 58  RVDWAHPK-FGTILASCSYDGKVLIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPLL 116

Query: 108 CSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNP------------LDDNLILTG 155
                D  + + + +   +    +  AH   ++   W P             +    +TG
Sbjct: 117 LVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTG 176

Query: 156 SADNSVRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWSPD--KSSVFGSSAEDGLLNIW 213
            ADN V+++   +     V    +  EGHS  V  V WSP     S   S ++D    IW
Sbjct: 177 GADNLVKIWKYNSDAQTYV--LESTLEGHSDWVRDVAWSPTVLLRSYLASVSQDRTCIIW 234

Query: 214 DYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKV--VDFHWNASDPWTVVSVSDDCDSTGG 271
             +      ++                   D +    +         +     D      
Sbjct: 235 TQDNEQGPWKKTLLK----------EEKFPDVLWRASWS---LSGNVLALSGGD------ 275

Query: 272 GGTLQIWRMS 281
              + +W+ +
Sbjct: 276 -NKVTLWKEN 284

>3jro_A Fusion protein of protein transport protein SEC13 and nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, ER-golgi transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae} Length = 753

 Score = 76.9 bits (189), Expect = 8e-16
 Identities = 37/230 (16%), Positives = 76/230 (33%), Gaps = 44/230 (19%)

Query: 86  IYNGHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDW- 144
           I N H + + D        +   +   D  + +++    T  +I     H+  +  VDW 
Sbjct: 4   IANAHNELIHDAVLDYYG-KRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWA 62

Query: 145 NPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWSPDKS-SVFGS 203
           +P    ++ + S D  V ++       NG  S I     HSA+V  VQW+P +   +   
Sbjct: 63  HPKFGTILASCSYDGKVLIWK----EENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLV 118

Query: 204 SAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKV--VDFH----------W 251
           ++ DG +++ +++                + +      H   V    +            
Sbjct: 119 ASSDGKVSVVEFK-----------ENGTTSPIIID--AHAIGVNSASWAPATIEEDGEHN 165

Query: 252 NASDPWTVVSVSDDCDSTGGGGTLQIWRMSDLIYRPQDEVLAELEKFKAH 301
              +    V+   D         ++IW+     Y    +        + H
Sbjct: 166 GTKESRKFVTGGAD-------NLVKIWK-----YNSDAQTYVLESTLEGH 203

>3jro_A Fusion protein of protein transport protein SEC13 and nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, ER-golgi transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae} Length = 753

 Score = 56.5 bits (136), Expect = 4e-09
 Identities = 24/114 (21%), Positives = 36/114 (31%), Gaps = 6/114 (5%)

Query: 88  NGHEDTVEDVTFCPSSAQEFC--SVGDDSCLILWDARVGTSPVIKV---EKAHDADLHCV 142
            GH D V DV + P+        SV  D   I+W       P  K    E+     L   
Sbjct: 201 EGHSDWVRDVAWSPTVLLRSYLASVSQDRTCIIWTQDNEQGPWKKTLLKEEKFPDVLWRA 260

Query: 143 DWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWSPD 196
            W+    N++     DN V ++             +++  G S          D
Sbjct: 261 SWSL-SGNVLALSGGDNKVTLWKENLEGKWEPAGEVHQGGGGSGGGGATSKEFD 313

>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens} Length = 321

 Score = 78.7 bits (195), Expect = 6e-17
 Identities = 50/280 (17%), Positives = 84/280 (30%), Gaps = 79/280 (28%)

Query: 4   LTGHQDNAE---FALAMCPTEPYVLSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGS 60
              H D      +          V++G  D  V +W  +                     
Sbjct: 28  EQAHDDAIWSVAWGTNKKENSETVVTGSLDDLVKVWKWR------------------DER 69

Query: 61  IIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQEFCSVGDDSCLILWD 120
           +  Q                        GH+  V  V    +      S   D+ + LWD
Sbjct: 70  LDLQWS--------------------LEGHQLGVVSVDISHTL-PIAASSSLDAHIRLWD 108

Query: 121 ARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINK 180
              G    IK   A   D   + ++P D   + TG+    V +F   +      G     
Sbjct: 109 LENGK--QIKSIDAGPVDAWTLAFSP-DSQYLATGTHVGKVNIFGVES------GKKEYS 159

Query: 181 FEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHA 240
            +     +L + +SPD      S A DG++NI+D       +  G               
Sbjct: 160 LDTRGKFILSIAYSPD-GKYLASGAIDGIINIFD-------IATGKLLHTL--------E 203

Query: 241 GHRDKV--VDFHWNASDPWTVVSVSDDCDSTGGGGTLQIW 278
           GH   +  + F  ++     +V+ SDD       G ++I+
Sbjct: 204 GHAMPIRSLTFSPDSQ---LLVTASDD-------GYIKIY 233

>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens} Length = 321

 Score = 69.0 bits (170), Expect = 1e-13
 Identities = 48/278 (17%), Positives = 85/278 (30%), Gaps = 81/278 (29%)

Query: 4   LTGHQDNAEFALAMCPTEPYVLSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIK 63
           L GHQ     ++ +  T P   S   D  + LW           D    K          
Sbjct: 76  LEGHQLGV-VSVDISHTLPIAASSSLDAHIRLW-----------DLENGK---------- 113

Query: 64  QSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARV 123
                                   +        + F P S Q   +      + ++    
Sbjct: 114 -------------------QIKSIDAGPVDAWTLAFSPDS-QYLATGTHVGKVNIFGVES 153

Query: 124 GTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEG 183
           G              +  + ++P D   + +G+ D  + +FD         G  ++  EG
Sbjct: 154 GK--KEYSLDTRGKFILSIAYSP-DGKYLASGAIDGIINIFDIAT------GKLLHTLEG 204

Query: 184 HSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQG-PRTTNYPAGLFFQHAGH 242
           H+  +  + +SPD S +  ++++DG + I+D       V+      T           GH
Sbjct: 205 HAMPIRSLTFSPD-SQLLVTASDDGYIKIYD-------VQHANLAGT-------LS--GH 247

Query: 243 RDKV--VDFHWNASDPWTVVSVSDDCDSTGGGGTLQIW 278
              V  V F     D    VS S D        ++++W
Sbjct: 248 ASWVLNVAF---CPDDTHFVSSSSD-------KSVKVW 275

>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens} Length = 321

 Score = 69.0 bits (170), Expect = 2e-13
 Identities = 49/280 (17%), Positives = 96/280 (34%), Gaps = 79/280 (28%)

Query: 4   LTGHQDNAEFALAMCPTEPYVLSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIK 63
           +     +A + LA  P   Y+ +G     V ++ ++                  SG    
Sbjct: 118 IDAGPVDA-WTLAFSPDSQYLATGTHVGKVNIFGVE------------------SGKKEY 158

Query: 64  QSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARV 123
                                   +     +  + + P   +   S   D  + ++D   
Sbjct: 159 ----------------------SLDTRGKFILSIAYSPDG-KYLASGAIDGIINIFDIAT 195

Query: 124 GTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEG 183
           G   ++   + H   +  + ++P D  L++T S D  ++++D ++       +      G
Sbjct: 196 GK--LLHTLEGHAMPIRSLTFSP-DSQLLVTASDDGYIKIYDVQH------ANLAGTLSG 246

Query: 184 HSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHR 243
           H++ VL V + PD  + F SS+ D  + +WD       V              F    H+
Sbjct: 247 HASWVLNVAFCPD-DTHFVSSSSDKSVKVWDVGT-RTCVHT------------FF--DHQ 290

Query: 244 DKV--VDFHWNASDPWTVVSVSDDCDSTGGGGTLQIWRMS 281
           D+V  V ++ N S    +VSV DD         + I+   
Sbjct: 291 DQVWGVKYNGNGS---KIVSVGDD-------QEIHIYDCP 320

>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens} Length = 321

 Score = 64.4 bits (158), Expect = 5e-12
 Identities = 30/179 (16%), Positives = 60/179 (33%), Gaps = 37/179 (20%)

Query: 105 QEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNP---LDDNLILTGSADNSV 161
                   ++       +     + K E+AHD  +  V W      +   ++TGS D+ V
Sbjct: 3   HHHHHSSRENLYFQGTNQ--YGILFKQEQAHDDAIWSVAWGTNKKENSETVVTGSLDDLV 60

Query: 162 RMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKK 221
           +++       +         EGH   V+ V  S     +  SS+ D  + +WD E  GK+
Sbjct: 61  KVWK----WRDERLDLQWSLEGHQLGVVSVDISHT-LPIAASSSLDAHIRLWDLEN-GKQ 114

Query: 222 VEQGPRTTNYPAGLFFQHAGHRDKV--VDFHWNASDPWTVVSVSDDCDSTGGGGTLQIW 278
           +    ++ +                  + F     D   + + +         G + I+
Sbjct: 115 I----KSID----------AGPVDAWTLAFS---PDSQYLATGTHV-------GKVNIF 149

>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens} Length = 321

 Score = 46.3 bits (111), Expect = 5e-06
 Identities = 28/165 (16%), Positives = 50/165 (30%), Gaps = 45/165 (27%)

Query: 1   MEILTGHQDNAEFALAMCPTEPYVLSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGS 60
           +  L GH      +L   P    +++   D  + ++           D   A        
Sbjct: 199 LHTLEGHAMPI-RSLTFSPDSQLLVTASDDGYIKIY-----------DVQHAN------- 239

Query: 61  IIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQEFCSVGDDSCLILWD 120
                                   G  +GH   V +V FCP     F S   D  + +WD
Sbjct: 240 ----------------------LAGTLSGHASWVLNVAFCPDD-THFVSSSSDKSVKVWD 276

Query: 121 ARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFD 165
               T   +     H   +  V +N  + + I++   D  + ++D
Sbjct: 277 VGTRT--CVHTFFDHQDQVWGVKYNG-NGSKIVSVGDDQEIHIYD 318

>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A 2h13_A 3p4f_A 4a7j_A* 2h9l_A ... Length = 312

 Score = 78.7 bits (195), Expect = 7e-17
 Identities = 43/126 (34%), Positives = 61/126 (48%), Gaps = 11/126 (8%)

Query: 89  GHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLD 148
           GH+  + DV +   S     S  DD  L +WD   G    +K  K H   + C ++NP  
Sbjct: 63  GHKLGISDVAWSSDS-NLLVSASDDKTLKIWDVSSGK--CLKTLKGHSNYVFCCNFNP-Q 118

Query: 149 DNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAEDG 208
            NLI++GS D SVR++D +       G  +     HS  V  V ++ D  S+  SS+ DG
Sbjct: 119 SNLIVSGSFDESVRIWDVKT------GKCLKTLPAHSDPVSAVHFNRD-GSLIVSSSYDG 171

Query: 209 LLNIWD 214
           L  IWD
Sbjct: 172 LCRIWD 177

>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A 2h13_A 3p4f_A 4a7j_A* 2h9l_A ... Length = 312

 Score = 74.0 bits (183), Expect = 3e-15
 Identities = 50/192 (26%), Positives = 78/192 (40%), Gaps = 38/192 (19%)

Query: 89  GHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLD 148
           GH   V  V F P+  +   S   D  + +W A  G     K    H   +  V W+  D
Sbjct: 21  GHTKAVSSVKFSPNG-EWLASSSADKLIKIWGAYDGK--FEKTISGHKLGISDVAWSS-D 76

Query: 149 DNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAEDG 208
            NL+++ S D +++++D  +      G  +   +GHS  V C  ++P  S++  S + D 
Sbjct: 77  SNLLVSASDDKTLKIWDVSS------GKCLKTLKGHSNYVFCCNFNPQ-SNLIVSGSFDE 129

Query: 209 LLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKV--VDFHWNASDPWTVVSVSDDC 266
            + IWD       V+ G      P         H D V  V F+ + S    +VS S D 
Sbjct: 130 SVRIWD-------VKTGKCLKTLP--------AHSDPVSAVHFNRDGS---LIVSSSYD- 170

Query: 267 DSTGGGGTLQIW 278
                 G  +IW
Sbjct: 171 ------GLCRIW 176

>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A 2h13_A 3p4f_A 4a7j_A* 2h9l_A ... Length = 312

 Score = 72.9 bits (180), Expect = 6e-15
 Identities = 47/238 (19%), Positives = 86/238 (36%), Gaps = 48/238 (20%)

Query: 1   MEILTGHQDNAEFALAMCPTEPYVLSGGKDKSVVLWSIQDHITSSATDPATAKS----AG 56
           ++ L GH +   F     P    ++SG  D+SV +W           D  T K       
Sbjct: 100 LKTLKGHSNYV-FCCNFNPQSNLIVSGSFDESVRIW-----------DVKTGKCLKTLPA 147

Query: 57  SSGSI--IKQSPKPGDG-------NDK------AADGPSVGPRGIYNGHEDTVEDVTFCP 101
            S  +  +  +    DG        D        A G  +  + + +     V  V F P
Sbjct: 148 HSDPVSAVHFNR---DGSLIVSSSYDGLCRIWDTASGQCL--KTLIDDDNPPVSFVKFSP 202

Query: 102 SSAQEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPL--DDNLILTGSADN 159
           +  +   +   D+ L LWD   G    +K    H  + +C+  N        I++GS DN
Sbjct: 203 NG-KYILAATLDNTLKLWDYSKGK--CLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDN 259

Query: 160 SVRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWSPDKSSVF-GSSAEDGLLNIWDYE 216
            V +++ +          + K +GH+  V+     P ++ +   +   D  + +W  +
Sbjct: 260 LVYIWNLQT------KEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLWKSD 311

>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A 2h13_A 3p4f_A 4a7j_A* 2h9l_A ... Length = 312

 Score = 52.1 bits (126), Expect = 6e-08
 Identities = 32/156 (20%), Positives = 60/156 (38%), Gaps = 35/156 (22%)

Query: 125 TSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGH 184
              +      H   +  V ++P +   + + SAD  ++++   +      G       GH
Sbjct: 12  NYALKFTLAGHTKAVSSVKFSP-NGEWLASSSADKLIKIWGAYD------GKFEKTISGH 64

Query: 185 SAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRD 244
              +  V WS D S++  S+++D  L IWD    GK ++              +  GH +
Sbjct: 65  KLGISDVAWSSD-SNLLVSASDDKTLKIWDVSS-GKCLKT------------LK--GHSN 108

Query: 245 KV--VDFHWNASDPWTVVSVSDDCDSTGGGGTLQIW 278
            V   +F+        +VS S D        +++IW
Sbjct: 109 YVFCCNFN---PQSNLIVSGSFDE-------SVRIW 134

>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B* Length = 340

 Score = 78.7 bits (195), Expect = 8e-17
 Identities = 54/280 (19%), Positives = 87/280 (31%), Gaps = 82/280 (29%)

Query: 4   LTGHQDNAEFALAMCPTEPYVLSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIK 63
           L GH     +A+        +LS  +D  +++W           D  T            
Sbjct: 51  LRGHLAKI-YAMHWGTDSRLLLSASQDGKLIIW-----------DSYTTN---------- 88

Query: 64  QSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDA-- 121
                                         V    + PS        G D+   +++   
Sbjct: 89  -------------------KVHAIPLRSSWVMTCAYAPSG-NYVACGGLDNICSIYNLKT 128

Query: 122 RVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKF 181
           R G   V +    H   L C  +    DN I+T S D +  ++D         G     F
Sbjct: 129 REGNVRVSRELAGHTGYLSCCRFLD--DNQIVTSSGDTTCALWDIET------GQQTTTF 180

Query: 182 EGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQG-PRTTNYPAGLFFQHA 240
            GH+  V+ +  +PD + +F S A D    +WD       V +G  R T       F   
Sbjct: 181 TGHTGDVMSLSLAPD-TRLFVSGACDASAKLWD-------VREGMCRQT-------FT-- 223

Query: 241 GHRDKV--VDFHWNASDPWTVVSVSDDCDSTGGGGTLQIW 278
           GH   +  + F  N +      + SDD        T +++
Sbjct: 224 GHESDINAICFFPNGN---AFATGSDD-------ATCRLF 253

>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B* Length = 340

 Score = 72.2 bits (178), Expect = 1e-14
 Identities = 39/213 (18%), Positives = 64/213 (30%), Gaps = 50/213 (23%)

Query: 2   EILTGHQDNAEFALAMCPTEPYVLSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSI 61
              TGH  +   +L++ P     +SG  D S  LW           D             
Sbjct: 178 TTFTGHTGDV-MSLSLAPDTRLFVSGACDASAKLW-----------DVREGM-------- 217

Query: 62  IKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDA 121
                                 R  + GHE  +  + F P+    F +  DD+   L+D 
Sbjct: 218 ---------------------CRQTFTGHESDINAICFFPNG-NAFATGSDDATCRLFDL 255

Query: 122 RVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKF 181
           R     +          +  V ++     L+L G  D +  ++D                
Sbjct: 256 RADQELMTYSHDNIICGITSVSFSK-SGRLLLAGYDDFNCNVWDALK------ADRAGVL 308

Query: 182 EGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWD 214
            GH   V C+  + D      + + D  L IW+
Sbjct: 309 AGHDNRVSCLGVTDD-GMAVATGSWDSFLKIWN 340

>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B* Length = 340

 Score = 69.5 bits (171), Expect = 1e-13
 Identities = 54/274 (19%), Positives = 94/274 (34%), Gaps = 63/274 (22%)

Query: 23  YVLSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSI--IKQSPKPGDG------NDK 74
           YV  GG D    +++++   T       + + AG +G +   +      D        D 
Sbjct: 111 YVACGGLDNICSIYNLK---TREGNVRVSRELAGHTGYLSCCRFLD---DNQIVTSSGDT 164

Query: 75  ------AADGPSVGPRGIYNGHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPV 128
                    G        + GH   V  ++  P + + F S   D+   LWD R G    
Sbjct: 165 TCALWDIETGQQTTT---FTGHTGDVMSLSLAPDT-RLFVSGACDASAKLWDVREGM--C 218

Query: 129 IKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGHS--A 186
            +    H++D++ + + P + N   TGS D + R+FD R          +  +   +   
Sbjct: 219 RQTFTGHESDINAICFFP-NGNAFATGSDDATCRLFDLRA------DQELMTYSHDNIIC 271

Query: 187 AVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKV 246
            +  V +S     +  +  +D   N+WD     K    G               GH ++V
Sbjct: 272 GITSVSFSKSGRLLL-AGYDDFNCNVWD---ALKADRAGVLA------------GHDNRV 315

Query: 247 --VDFHWNASDPWTVVSVSDDCDSTGGGGTLQIW 278
             +       D   V + S D         L+IW
Sbjct: 316 SCLGV---TDDGMAVATGSWD-------SFLKIW 339

>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B* Length = 340

 Score = 54.1 bits (131), Expect = 2e-08
 Identities = 26/192 (13%), Positives = 58/192 (30%), Gaps = 40/192 (20%)

Query: 89  GHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLD 148
                        + +Q        + +             +  + H A ++ + W   D
Sbjct: 16  NQIRDARKACADATLSQI------TNNIDPVGRIQMR--TRRTLRGHLAKIYAMHWGT-D 66

Query: 149 DNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAEDG 208
             L+L+ S D  + ++D          + ++     S+ V+   ++P   +       D 
Sbjct: 67  SRLLLSASQDGKLIIWDSYT------TNKVHAIPLRSSWVMTCAYAPS-GNYVACGGLDN 119

Query: 209 LLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKV--VDFHWNASDPWTVVSVSDDC 266
           + +I++       ++           L    AGH   +    F     D   +V+ S D 
Sbjct: 120 ICSIYN-------LKTREGNVRVSREL----AGHTGYLSCCRF----LDDNQIVTSSGDT 164

Query: 267 DSTGGGGTLQIW 278
                  T  +W
Sbjct: 165 -------TCALW 169

>3iz6_A 40S ribosomal protein SA (S2P); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} Length = 305

 Score = 75.3 bits (186), Expect = 1e-15
 Identities = 7/193 (3%), Positives = 26/193 (13%), Gaps = 26/193 (13%)

Query: 89  GHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLD 148
                +  +           +       +L  A+        +   H             
Sbjct: 64  LAARVIVAIENPQDI-IVQSARPYGQRAVLKFAQYTG--AHAIAGRHTPGTFTNQLQT-S 119

Query: 149 DNLILTGSADNSVRMFDRRNLTSNGVGSPINK-FEGHSAAVLCVQWSPDKSSVFGSSAED 207
            +        +          ++ G    I           + +    +           
Sbjct: 120 FSEPRLLILTDPRTDHQPIKESALGNIPTIAFCDTDSPMRYVDIGIPANNKGKQSIGCLF 179

Query: 208 GLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKV--VDFHWNASDPWTVVSVSDD 265
            LL           ++                          +            ++   
Sbjct: 180 WLLARMV-------LQMRGTILPGHKWDV---MVDLFFYRDPEE--AKEQEEEEAALVAP 227

Query: 266 CDSTGGGGTLQIW 278
                      + 
Sbjct: 228 -------DYGAVA 233

>3iz6_A 40S ribosomal protein SA (S2P); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} Length = 305

 Score = 67.2 bits (165), Expect = 7e-13
 Identities = 10/193 (5%), Positives = 26/193 (13%), Gaps = 33/193 (17%)

Query: 89  GHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLD 148
              D       C    +    V       ++   +G     +  +     +  ++    D
Sbjct: 23  LAADVHLGTKNCDFQME--RYVYKRRTDGIYIINLGK--TWEKLQLAARVIVAIENPQ-D 77

Query: 149 DNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAEDG 208
             +           +   +                H+      Q     S          
Sbjct: 78  IIVQSARPYGQRAVLKFAQY------TGAHAIAGRHTPGTFTNQLQTSFSEPR-LLILTD 130

Query: 209 LLNIWDYEKVGKKVEQG-PRTTNYPAGLFFQHAGHRDKV--VDFHWNASDPWTVVSVSDD 265
                          +                     +   +    N             
Sbjct: 131 PRTDHQ-------PIKESALGNIPTIAFCDT--DSPMRYVDIGIPANNK--GKQSIGCLF 179

Query: 266 CDSTGGGGTLQIW 278
                    L   
Sbjct: 180 W-------LLARM 185

>3iz6_A 40S ribosomal protein SA (S2P); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} Length = 305

 Score = 54.1 bits (131), Expect = 2e-08
 Identities = 4/148 (2%), Positives = 19/148 (12%), Gaps = 36/148 (24%)

Query: 133 KAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQ 192
                             +        +  ++          G    K +  +  ++ ++
Sbjct: 22  MLAADVHLGTKNCD--FQMERYVYKRRTDGIYIINL------GKTWEKLQLAARVIVAIE 73

Query: 193 WSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKV--VDFH 250
              D      +        +   +                         H          
Sbjct: 74  NPQDIIVQ-SARPYGQRAVLKFAQY-TGAHAIAG--------------RHTPGTFTNQL- 116

Query: 251 WNASDPWTVVSVSDDCDSTGGGGTLQIW 278
              +       +                
Sbjct: 117 --QTSFSEPRLLILT-------DPRTDH 135

>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus} Length = 354

 Score = 78.4 bits (194), Expect = 1e-16
 Identities = 50/283 (17%), Positives = 84/283 (29%), Gaps = 81/283 (28%)

Query: 3   ILTGHQDNAEFALAMCPTEPYVLSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSII 62
            L GH +     +  C  +  ++S  +D  V++W           D  T           
Sbjct: 59  TLKGHGNKV-LCMDWCKDKRRIVSSSQDGKVIVW-----------DSFTTN--------- 97

Query: 63  KQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDAR 122
                                          V    + PS        G D+   ++   
Sbjct: 98  --------------------KEHAVTMPCTWVMACAYAPSG-CAIACGGLDNKCSVYPLT 136

Query: 123 VG----TSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPI 178
                  +   K    H   L    +    D  ILT S D +  ++D  +      G  +
Sbjct: 137 FDKNENMAAKKKSVAMHTNYLSACSFTN-SDMQILTASGDGTCALWDVES------GQLL 189

Query: 179 NKFEGHSAAVLCVQWSPDKS-SVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFF 237
             F GH A VLC+  +P ++ + F S   D    +WD    G+ V+             F
Sbjct: 190 QSFHGHGADVLCLDLAPSETGNTFVSGGCDKKAMVWDMRS-GQCVQA------------F 236

Query: 238 QHAGHRDKV--VDFHWNASDPWTVVSVSDDCDSTGGGGTLQIW 278
           +   H   V  V ++ +        S SDD        T +++
Sbjct: 237 E--THESDVNSVRYYPSGD---AFASGSDD-------ATCRLY 267

>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus} Length = 354

 Score = 71.4 bits (176), Expect = 3e-14
 Identities = 36/193 (18%), Positives = 68/193 (35%), Gaps = 36/193 (18%)

Query: 89  GHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNP-L 147
            H + +   +F  S   +  +   D    LWD   G   +++    H AD+ C+D  P  
Sbjct: 152 MHTNYLSACSFTNSD-MQILTASGDGTCALWDVESGQ--LLQSFHGHGADVLCLDLAPSE 208

Query: 148 DDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAED 207
             N  ++G  D    ++D R+      G  +  FE H + V  V++ P     F S ++D
Sbjct: 209 TGNTFVSGGCDKKAMVWDMRS------GQCVQAFETHESDVNSVRYYPS-GDAFASGSDD 261

Query: 208 GLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKV--VDFHWNASDPWTVVSVSDD 265
               ++D               +    ++ +          VDF         + +  +D
Sbjct: 262 ATCRLYDLR------------ADREVAIYSKE-SIIFGASSVDFS---LSGRLLFAGYND 305

Query: 266 CDSTGGGGTLQIW 278
                   T+ +W
Sbjct: 306 -------YTINVW 311

>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus} Length = 354

 Score = 68.7 bits (169), Expect = 2e-13
 Identities = 46/231 (19%), Positives = 81/231 (35%), Gaps = 42/231 (18%)

Query: 1   MEILTGHQDNAEFALAMCPTEPYVLSGGKDKSVVLWSIQ------------DHITSSATD 48
            + +  H +    A +   ++  +L+   D +  LW ++              +      
Sbjct: 147 KKSVAMHTN-YLSACSFTNSDMQILTASGDGTCALWDVESGQLLQSFHGHGADVLCLDLA 205

Query: 49  PATAKSAGSSGSIIKQSPKPGDGNDK------AADGPSVGPRGIYNGHEDTVEDVTFCPS 102
           P+   +   SG             DK         G  V     +  HE  V  V + PS
Sbjct: 206 PSETGNTFVSGG-----------CDKKAMVWDMRSGQCVQA---FETHESDVNSVRYYPS 251

Query: 103 SAQEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVR 162
               F S  DD+   L+D R      I  +++       VD++     L+  G  D ++ 
Sbjct: 252 G-DAFASGSDDATCRLYDLRADREVAIYSKESIIFGASSVDFSL-SGRLLFAGYNDYTIN 309

Query: 163 MFDRRNLTSNGVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIW 213
           ++D         GS ++   GH   V  ++ SPD  + F S + D  L +W
Sbjct: 310 VWDVLK------GSRVSILFGHENRVSTLRVSPD-GTAFCSGSWDHTLRVW 353

>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus} Length = 354

 Score = 50.2 bits (121), Expect = 3e-07
 Identities = 27/167 (16%), Positives = 48/167 (28%), Gaps = 37/167 (22%)

Query: 147 LDDNLILTGSADNSVRMFD---RRNLTSNGVGSPINKFEGHSAAVLCVQWSPDKSSVFGS 203
           L   L    +  + V +     R       V       +GH   VLC+ W  DK  +  S
Sbjct: 23  LKGKLEEERAKLHDVELHQVAERVEALGQFVMKTRRTLKGHGNKVLCMDWCKDKRRI-VS 81

Query: 204 SAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKV--VDFHWNASDPWTVVS 261
           S++DG + +WD      K                        V    +   A     +  
Sbjct: 82  SSQDGKVIVWDSFT-TNKEHAVT--------------MPCTWVMACAY---APSGCAIAC 123

Query: 262 VSDDCDSTGGGGTLQIWRMSDLIYRPQDEVLAELEKFKAH---VISC 305
              D           ++    L +   + + A+ +    H   + +C
Sbjct: 124 GGLDN-------KCSVY---PLTFDKNENMAAKKKSVAMHTNYLSAC 160

>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A Length = 297

 Score = 77.3 bits (191), Expect = 2e-16
 Identities = 42/310 (13%), Positives = 89/310 (28%), Gaps = 60/310 (19%)

Query: 3   ILTGHQDNAEFALAMCPTEPYVLSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSI- 61
           I   H +       M      + +   DK++ ++ ++       T        G  G + 
Sbjct: 4   IANAHNEMI-HDAVMDYYGKRMATCSSDKTIKIFEVE-----GETHKLIDTLTGHEGPVW 57

Query: 62  -IKQSPKPGDGN-------DKA-----ADGPSVGPRGIYNGHEDTVEDVTFCPSSA-QEF 107
            +  +     G        D        +        ++  H  +V  V + P       
Sbjct: 58  RVDWAHPK-FGTILASCSYDGKVMIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPML 116

Query: 108 CSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNP------------LDDNLILTG 155
                D  + + + +   +    +  AH   ++   W P             +    +TG
Sbjct: 117 LVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTG 176

Query: 156 SADNSVRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWSPD--KSSVFGSSAEDGLLNIW 213
            ADN V+++     +        +  EGHS  V  V WSP     S   S ++D    IW
Sbjct: 177 GADNLVKIWKYN--SDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYMASVSQDRTCIIW 234

Query: 214 DYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKV--VDFHWNASDPWTVVSVSDDCDSTGG 271
             +      ++             +     D +    +  + +    +     D      
Sbjct: 235 TQDNEQGPWKK----------TLLKEEKFPDVLWRASWSLSGN---VLALSGGD------ 275

Query: 272 GGTLQIWRMS 281
              + +W+ +
Sbjct: 276 -NKVTLWKEN 284

>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A Length = 297

 Score = 75.3 bits (186), Expect = 7e-16
 Identities = 34/204 (16%), Positives = 75/204 (36%), Gaps = 25/204 (12%)

Query: 86  IYNGHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDW- 144
           I N H + + D        +   +   D  + +++    T  +I     H+  +  VDW 
Sbjct: 4   IANAHNEMIHDAVMDYYG-KRMATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWA 62

Query: 145 NPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWSPDKS-SVFGS 203
           +P    ++ + S D  V ++       NG  S I     HSA+V  VQW+P +   +   
Sbjct: 63  HPKFGTILASCSYDGKVMIWK----EENGRWSQIAVHAVHSASVNSVQWAPHEYGPMLLV 118

Query: 204 SAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKV--VDFHWNASDPWTVVS 261
           ++ DG +++ +++                + +      H   V    +     +     +
Sbjct: 119 ASSDGKVSVVEFK-----------ENGTTSPIIID--AHAIGVNSASWAPATIEEDGEHN 165

Query: 262 VSDDCD---STGGGGTLQIWRMSD 282
            + +     + G    ++IW+ + 
Sbjct: 166 GTKESRKFVTGGADNLVKIWKYNS 189

>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae} Length = 313

 Score = 77.6 bits (192), Expect = 2e-16
 Identities = 31/190 (16%), Positives = 56/190 (29%), Gaps = 35/190 (18%)

Query: 89  GHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLD 148
           GH+  V DV        +  SV  D  + LW        +  V       L+ V ++  +
Sbjct: 16  GHDQDVRDVVAVDD--SKVASVSRDGTVRLWSKD--DQWLGTVVYTGQGFLNSVCYDS-E 70

Query: 149 DNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAEDG 208
             L+L G  D  +        +      P+    GH   V  + +         S + D 
Sbjct: 71  KELLLFGGKDTMINGVPLFATSG---EDPLYTLIGHQGNVCSLSFQDGV---VISGSWDK 124

Query: 209 LLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKVVDFHWNASDPWTVVSVSDDCDS 268
              +W    +   ++                  H   V D    +      ++ S D   
Sbjct: 125 TAKVWKEGSLVYNLQ-----------------AHNASVWDAKVVSFSENKFLTASAD--- 164

Query: 269 TGGGGTLQIW 278
                T+++W
Sbjct: 165 ----KTIKLW 170

>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae} Length = 313

 Score = 71.0 bits (175), Expect = 3e-14
 Identities = 39/214 (18%), Positives = 73/214 (34%), Gaps = 55/214 (25%)

Query: 1   MEILTGHQDNAEFALAMCPTEPYVLSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGS 60
           +  L  H  +   A  +  +E   L+   DK++ LW                     +  
Sbjct: 135 VYNLQAHNASVWDAKVVSFSENKFLTASADKTIKLW--------------------QNDK 174

Query: 61  IIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQEFCSVGDDSCLILWD 120
           +IK                     G    H D V  +         F S  +D  + L D
Sbjct: 175 VIKT------------------FSG---IHNDVVRHLAVVDDG--HFISCSNDGLIKLVD 211

Query: 121 ARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINK 180
              G   V++  + H++ ++C+   P  +  I++   D +VR++ + N      GS    
Sbjct: 212 MHTGD--VLRTYEGHESFVYCIKLLP--NGDIVSCGEDRTVRIWSKEN------GSLKQV 261

Query: 181 FEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWD 214
               + ++  V    +   + GSS  D L+ I+ 
Sbjct: 262 ITLPAISIWSVDCMSNGDIIVGSS--DNLVRIFS 293

>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae} Length = 313

 Score = 64.5 bits (158), Expect = 5e-12
 Identities = 44/222 (19%), Positives = 78/222 (35%), Gaps = 31/222 (13%)

Query: 2   EILTGHQDNAEFALAMCPTEPYVLSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSI 61
            ++   Q     ++     +  +L GGKD  +    +      ++ +       G  G++
Sbjct: 53  TVVYTGQGFL-NSVCYDSEKELLLFGGKDTMINGVPLFA----TSGEDPLYTLIGHQGNV 107

Query: 62  IKQSPKPGD----GNDKAA----DGPSVGPRGIYNGHEDTVEDVTFCPSSAQEFCSVGDD 113
              S + G       DK A    +G  V        H  +V D      S  +F +   D
Sbjct: 108 CSLSFQDGVVISGSWDKTAKVWKEGSLVYN---LQAHNASVWDAKVVSFSENKFLTASAD 164

Query: 114 SCLILWDARVGTSPVIKV-EKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSN 172
             + LW        VIK     H+  +  +      D   ++ S D  +++ D       
Sbjct: 165 KTIKLWQ----NDKVIKTFSGIHNDVVRHLAVVD--DGHFISCSNDGLIKLVDMHT---- 214

Query: 173 GVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWD 214
             G  +  +EGH + V C++  P+   V  S  ED  + IW 
Sbjct: 215 --GDVLRTYEGHESFVYCIKLLPNGDIV--SCGEDRTVRIWS 252

>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A Length = 366

 Score = 77.7 bits (192), Expect = 2e-16
 Identities = 35/208 (16%), Positives = 76/208 (36%), Gaps = 45/208 (21%)

Query: 89  GHEDTVEDVTFCPSSAQE----FCSVGDDSCLILWDARVGTSPVIKVEKAH-----DADL 139
            H   +  V F   S +     F +VG +    L++        I++ +++     D + 
Sbjct: 16  DHNQPLFGVQFNWHSKEGDPLVFATVGSNRV-TLYECHSQG--EIRLLQSYVDADADENF 72

Query: 140 HCVDWNP---LDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWSPD 196
           +   W         L+    +   +R+ +            I  + GH  A+  +++ P 
Sbjct: 73  YTCAWTYDSNTSHPLLAVAGSRGIIRIINPIT------MQCIKHYVGHGNAINELKFHPR 126

Query: 197 KSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKV--VDFHWNAS 254
             ++  S ++D  L +W+ +            T+    +F    GHRD+V   D+     
Sbjct: 127 DPNLLLSVSKDHALRLWNIQ------------TDTLVAIFGGVEGHRDEVLSADYD---L 171

Query: 255 DPWTVVSVSDDCDSTGGGGTLQIWRMSD 282
               ++S   D        +L++WR++ 
Sbjct: 172 LGEKIMSCGMD-------HSLKLWRINS 192

>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A Length = 366

 Score = 68.4 bits (168), Expect = 3e-13
 Identities = 39/319 (12%), Positives = 85/319 (26%), Gaps = 102/319 (31%)

Query: 1   MEILTGHQDNAE--------FALAMCPTEPYVLSGGKDKSVVLWSIQDHITSSATDPATA 52
           + +L  + D           +      + P +   G    + + +               
Sbjct: 57  IRLLQSYVDADADENFYTCAWTYDSNTSHPLLAVAGSRGIIRIINPI------------- 103

Query: 53  KSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQEFCSVGD 112
                +   IK                       Y GH + + ++ F P       SV  
Sbjct: 104 -----TMQCIKH----------------------YVGHGNAINELKFHPRDPNLLLSVSK 136

Query: 113 DSCLILWDARVGTSPVIKVE-KAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTS 171
           D  L LW+ +  T   I    + H  ++   D++      I++   D+S++++   +   
Sbjct: 137 DHALRLWNIQTDTLVAIFGGVEGHRDEVLSADYDL-LGEKIMSCGMDHSLKLWRINS--- 192

Query: 172 NGVGSPINKFEGHSA----------------------------AVLCVQWSPDKSSVFGS 203
                 +N  +                                 V CV+W  D      S
Sbjct: 193 ---KRMMNAIKESYDYNPNKTNRPFISQKIHFPDFSTRDIHRNYVDCVRWLGDL---ILS 246

Query: 204 SAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKV--VDFHWNASDPW--TV 259
            + +  +  W   K  +      + +     +  +    +  +  + F     D W   +
Sbjct: 247 KSCENAIVCWKPGK-MEDDIDKIKPSESNVTILGRFDYSQCDIWYMRFS---MDFWQKML 302

Query: 260 VSVSDDCDSTGGGGTLQIW 278
              +         G L +W
Sbjct: 303 ALGNQV-------GKLYVW 314

>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A Length = 366

 Score = 46.5 bits (111), Expect = 5e-06
 Identities = 22/170 (12%), Positives = 47/170 (27%), Gaps = 35/170 (20%)

Query: 2   EILTGHQDNAEFALAMCPTEPYVLSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSI 61
                H+ N    +        +LS   + ++V W            P   +        
Sbjct: 225 STRDIHR-NYVDCVRWLGD--LILSKSCENAIVCW-----------KPGKMEDDIDKIKP 270

Query: 62  IKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQEF-CSVGDDSCLILWD 120
            + +               V   G ++  +  +  + F     Q+          L +WD
Sbjct: 271 SESN---------------VTILGRFDYSQCDIWYMRFSMDFWQKMLALGNQVGKLYVWD 315

Query: 121 ARVGTSPVIKVEK----AHDADLHCVDWNPLDDNLILTGSADNSVRMFDR 166
             V      K          A +    ++  D ++++    D S+  +DR
Sbjct: 316 LEVEDPHKAKCTTLTHHKCGAAIRQTSFSR-DSSILIAVCDDASIWRWDR 364

>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe} Length = 401

 Score = 78.0 bits (193), Expect = 2e-16
 Identities = 40/229 (17%), Positives = 84/229 (36%), Gaps = 43/229 (18%)

Query: 4   LTGHQDNAEFAL-AMCPTEPYVLSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSI- 61
             G  D  ++ L  +  +   V++   +++V +W+      S+  +         S  + 
Sbjct: 87  APGIID--DYYLNLLDWSNLNVVAVALERNVYVWNADSGSVSALAE------TDESTYVA 138

Query: 62  -IKQSPKPGDGN-------DK------AADGPSVGPRGIYNGHEDTVEDVTFCPSSAQEF 107
            +K S    DG+       +             +       GH+  V  +++   +    
Sbjct: 139 SVKWSH---DGSFLSVGLGNGLVDIYDVESQTKLRT---MAGHQARVGCLSW---NRHVL 189

Query: 108 CSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRR 167
            S      +   D R+  +  I   + H +++  + W   D   + +G  DN V+++D R
Sbjct: 190 SSGSRSGAIHHHDVRIA-NHQIGTLQGHSSEVCGLAWRS-DGLQLASGGNDNVVQIWDAR 247

Query: 168 NLTSNGVGSPINKFEGHSAAVLCVQWSPDKSSV--FGSSAEDGLLNIWD 214
           +        P      H+AAV  V W P +S++   G    D  ++ W+
Sbjct: 248 S------SIPKFTKTNHNAAVKAVAWCPWQSNLLATGGGTMDKQIHFWN 290

>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe} Length = 401

 Score = 73.8 bits (182), Expect = 5e-15
 Identities = 42/227 (18%), Positives = 75/227 (33%), Gaps = 37/227 (16%)

Query: 4   LTGHQDNAEFALAMCPTEPYVLSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSI-- 61
           + GHQ        +      + SG +  ++    ++        +       G S  +  
Sbjct: 172 MAGHQA---RVGCLSWNRHVLSSGSRSGAIHHHDVR------IANHQIGTLQGHSSEVCG 222

Query: 62  IKQSPKPGDG-------NDKAA---DGPSVGPRGIYNGHEDTVEDVTFCPSSAQEFCSVG 111
           +       DG       ND      D  S  P+     H   V+ V +CP  +    + G
Sbjct: 223 LAWRS---DGLQLASGGNDNVVQIWDARSSIPKFTKTNHNAAVKAVAWCPWQSNLLATGG 279

Query: 112 --DDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILT--GSADNSVRMFDRR 167
              D  +  W+A  G    +    A    +  + W+P     I++  G  DN++ ++   
Sbjct: 280 GTMDKQIHFWNAATGAR--VNTVDAGS-QVTSLIWSP-HSKEIMSTHGFPDNNLSIWS-- 333

Query: 168 NLTSNGVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWD 214
              S+   +       H   VL    SPD   +  ++A D  L  W 
Sbjct: 334 --YSSSGLTKQVDIPAHDTRVLYSALSPDGRILS-TAASDENLKFWR 377

>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe} Length = 401

 Score = 68.4 bits (168), Expect = 4e-13
 Identities = 39/190 (20%), Positives = 65/190 (34%), Gaps = 34/190 (17%)

Query: 89  GHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLD 148
           G  D         S+     +V  +  + +W+A  G S     E      +  V W+  D
Sbjct: 89  GIIDDYYLNLLDWSN-LNVVAVALERNVYVWNADSG-SVSALAETDESTYVASVKWSH-D 145

Query: 149 DNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAEDG 208
            + +  G  +  V ++D  +       + +    GH A V C+ W+    S   S +  G
Sbjct: 146 GSFLSVGLGNGLVDIYDVES------QTKLRTMAGHQARVGCLSWNRHVLS---SGSRSG 196

Query: 209 LLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKVVDFHWNASDPWTVVSVSDDCDS 268
            ++  D            R  N+  G      GH  +V    W  SD   + S  +D   
Sbjct: 197 AIHHHD-----------VRIANHQIGTL---QGHSSEVCGLAWR-SDGLQLASGGNDN-- 239

Query: 269 TGGGGTLQIW 278
                 +QIW
Sbjct: 240 -----VVQIW 244

>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae} Length = 369

 Score = 77.6 bits (192), Expect = 2e-16
 Identities = 35/194 (18%), Positives = 68/194 (35%), Gaps = 25/194 (12%)

Query: 89  GHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLD 148
           GHE  +  V +       F S   DS   +W +  G    +     H   +  +D +   
Sbjct: 30  GHERPLTQVKYNKEGDLLF-SCSKDSSASVWYSLNGE--RLGTLDGHTGTIWSIDVDC-F 85

Query: 149 DNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWSPD-KSSVFGS---S 204
               +TGSAD S++++D  N      G  +  ++     V  V++SP     +       
Sbjct: 86  TKYCVTGSADYSIKLWDVSN------GQCVATWKSPV-PVKRVEFSPCGNYFLAILDNVM 138

Query: 205 AEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKVVDFHWNASDPWTVVSVSD 264
              G +NI++ E+      +  + +  P      H    D      W+ +    +++   
Sbjct: 139 KNPGSINIYEIER-DSATHELTKVSEEPIHKIITH-EGLDAATVAGWS-TKGKYIIAGHK 195

Query: 265 DCDSTGGGGTLQIW 278
           D       G +  +
Sbjct: 196 D-------GKISKY 202

>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae} Length = 369

 Score = 63.0 bits (154), Expect = 2e-11
 Identities = 31/208 (14%), Positives = 64/208 (30%), Gaps = 44/208 (21%)

Query: 85  GIYNGHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDW 144
           G  +GH  T+  +     + +   +   D  + LWD   G    +   K+    +  V++
Sbjct: 68  GTLDGHTGTIWSIDVDCFT-KYCVTGSADYSIKLWDVSNGQC--VATWKSPVP-VKRVEF 123

Query: 145 NPLDDNLILTGS-----ADNSVRMFDRRN-----LTSNGVGSPINKFEGHSA--AVLCVQ 192
           +P   N  L           S+ +++          +     PI+K   H    A     
Sbjct: 124 SP-CGNYFLAILDNVMKNPGSINIYEIERDSATHELTKVSEEPIHKIITHEGLDAATVAG 182

Query: 193 WSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKV--VDFH 250
           WS     +  +  +DG ++ +D             + NY          H   +  + F 
Sbjct: 183 WSTKGKYII-AGHKDGKISKYD------------VSNNYEYVDSID--LHEKSISDMQFS 227

Query: 251 WNASDPWTVVSVSDDCDSTGGGGTLQIW 278
            + +     ++ S D           + 
Sbjct: 228 PDLT---YFITSSRD-------TNSFLV 245

>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae} Length = 369

 Score = 61.1 bits (149), Expect = 8e-11
 Identities = 30/142 (21%), Positives = 49/142 (34%), Gaps = 24/142 (16%)

Query: 89  GHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLD 148
            HE ++ D+ F P     F +   D+   L D       V+K  +     L+     PL 
Sbjct: 216 LHEKSISDMQFSPDL-TYFITSSRDTNSFLVDVSTLQ--VLKKYETDC-PLNTAVITPLK 271

Query: 149 DNLIL-------------TGSADNSVRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWSP 195
           + +IL                     R + +           I + +GH   +  V  SP
Sbjct: 272 EFIILGGGQEAKDVTTTSANEGKFEARFYHKIF------EEEIGRVQGHFGPLNTVAISP 325

Query: 196 DKSSVFGSSAEDGLLNIWDYEK 217
             +S   S  EDG + +  +EK
Sbjct: 326 QGTSY-ASGGEDGFIRLHHFEK 346

>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae} Length = 369

 Score = 55.7 bits (135), Expect = 5e-09
 Identities = 25/171 (14%), Positives = 55/171 (32%), Gaps = 31/171 (18%)

Query: 109 SVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRN 168
                S   L+        +      H+  L  V +N  + +L+ + S D+S  ++   N
Sbjct: 7   HHHHSSGENLYFQGSHMKAIKL--TGHERPLTQVKYNK-EGDLLFSCSKDSSASVWYSLN 63

Query: 169 LTSNGVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRT 228
                 G  +   +GH+  +  +      +    + + D  + +WD    G+ V      
Sbjct: 64  ------GERLGTLDGHTGTIWSIDVDCF-TKYCVTGSADYSIKLWDVSN-GQCV------ 109

Query: 229 TNYPAGLFFQHAGHRD-KVVDFHWNASDPWTVVSVSDDCDSTGGGGTLQIW 278
                            K V+F          +++ D  +     G++ I+
Sbjct: 110 --------ATWKSPVPVKRVEFS---PCGNYFLAILD--NVMKNPGSINIY 147

>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens} Length = 368

 Score = 76.9 bits (190), Expect = 3e-16
 Identities = 26/131 (19%), Positives = 55/131 (41%), Gaps = 13/131 (9%)

Query: 88  NGHEDTVEDVTFCPSSA--QEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWN 145
           +  +D++  ++F P +       +    + +  W+ +     + K ++ H   +  V W+
Sbjct: 36  SSPDDSIGCLSFSPPTLPGNFLIAGSWANDVRCWEVQDSGQTIPKAQQMHTGPVLDVCWS 95

Query: 146 PLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQW--SPDKSSVFGS 203
             D + + T S D + +M+D  +         I +   H A V  + W  +P+ S V  +
Sbjct: 96  D-DGSKVFTASCDKTAKMWDLSS------NQAI-QIAQHDAPVKTIHWIKAPNYSCVM-T 146

Query: 204 SAEDGLLNIWD 214
            + D  L  WD
Sbjct: 147 GSWDKTLKFWD 157

>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens} Length = 368

 Score = 62.7 bits (153), Expect = 2e-11
 Identities = 43/185 (23%), Positives = 72/185 (38%), Gaps = 39/185 (21%)

Query: 97  VTFCPSSAQEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNP--LDDNLILT 154
             F  S    F S   D+   + D        I+V  + D  + C+ ++P  L  N ++ 
Sbjct: 8   SGFGTSGTSMFGSATTDNHNPMKD--------IEVTSSPDDSIGCLSFSPPTLPGNFLIA 59

Query: 155 GSADNSVRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWD 214
           GS  N VR ++ ++ +   +       + H+  VL V WS D S VF +++ D    +WD
Sbjct: 60  GSWANDVRCWEVQD-SGQTIPKA---QQMHTGPVLDVCWSDDGSKVF-TASCDKTAKMWD 114

Query: 215 YEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKVVDFHWNAS-DPWTVVSVSDDCDSTGGGG 273
                         +N    +    A H   V   HW  + +   V++ S D        
Sbjct: 115 LS------------SNQAIQI----AQHDAPVKTIHWIKAPNYSCVMTGSWD-------K 151

Query: 274 TLQIW 278
           TL+ W
Sbjct: 152 TLKFW 156

>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens} Length = 368

 Score = 61.9 bits (151), Expect = 4e-11
 Identities = 43/305 (14%), Positives = 88/305 (28%), Gaps = 82/305 (26%)

Query: 2   EILTGHQDNAEFALAMCPTEP---YVLSGGKDKSVVLWSIQDHITSSATDPATAKSAGSS 58
           E+ +   D +   L+  P      ++++G     V  W +QD                 S
Sbjct: 33  EVTSSPDD-SIGCLSFSPPTLPGNFLIAGSWANDVRCWEVQD-----------------S 74

Query: 59  GSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQEFCSVGDDSCLIL 118
           G  I ++ +                      H   V DV +      +  +   D    +
Sbjct: 75  GQTIPKAQQ---------------------MHTGPVLDVCWSDDG-SKVFTASCDKTAKM 112

Query: 119 WDARVGTSPVIKVEKAHDADLHCVDWNP-LDDNLILTGSADNSVRMFDRRNLTSNGVGSP 177
           WD     +  I     HDA +  + W    + + ++TGS D +++ +D R+       +P
Sbjct: 113 WDLSSNQAIQI---AQHDAPVKTIHWIKAPNYSCVMTGSWDKTLKFWDTRS------SNP 163

Query: 178 INKFEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFF 237
           +   +            P   +V  ++     L ++                        
Sbjct: 164 MMVLQLPERCYCADVIYPM--AVVATAERG--LIVYQL-----------ENQPSEFRRIE 208

Query: 238 QHAGHRDKVVDFHWN-ASDPWTVVSVSDDCDSTGGGGTLQIWRMSDLIYRPQDEVLAELE 296
               H+ + V    +  + P      S +       G + I  ++            +  
Sbjct: 209 SPLKHQHRCVAIFKDKQNKPTGFALGSIE-------GRVAIHYINP------PNPAKDNF 255

Query: 297 KFKAH 301
            FK H
Sbjct: 256 TFKCH 260

>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens} Length = 368

 Score = 55.0 bits (133), Expect = 8e-09
 Identities = 24/243 (9%), Positives = 63/243 (25%), Gaps = 52/243 (21%)

Query: 4   LTGHQDNA---EFALAMCPTEPYVLSGGKDKSVVLW---------SIQDH---ITSSATD 48
           +  H        +     P    V++G  DK++  W          +Q       +    
Sbjct: 123 IAQHDAPVKTIHWIK--APNYSCVMTGSWDKTLKFWDTRSSNPMMVLQLPERCYCADVIY 180

Query: 49  PATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQE-- 106
           P    +    G I+ Q            +      R I +  +     V        +  
Sbjct: 181 PMAVVATAERGLIVYQ-----------LENQPSEFRRIESPLKHQHRCVAIFKDKQNKPT 229

Query: 107 -FCSVGDDSCLILWDARVGTS-PVIKVEKAHDADL------------HCVDWNPLDDNLI 152
            F     +  + +               K H ++             + + ++P     +
Sbjct: 230 GFALGSIEGRVAIHYINPPNPAKDNFTFKCHRSNGTNTSAPQDIYAVNGIAFHP-VHGTL 288

Query: 153 LTGSADNSVRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNI 212
            T  +D     +D+         + +   E     +    ++ +  ++F  ++       
Sbjct: 289 ATVGSDGRFSFWDKDA------RTKLKTSEQLDQPISACCFNHN-GNIFAYASSYDWSKG 341

Query: 213 WDY 215
            ++
Sbjct: 342 HEF 344

>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens} Length = 368

 Score = 40.7 bits (96), Expect = 3e-04
 Identities = 20/141 (14%), Positives = 43/141 (30%), Gaps = 35/141 (24%)

Query: 140 HCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWSPDKS- 198
               +     ++  + + DN   M D            I        ++ C+ +SP    
Sbjct: 6   TTSGFGTSGTSMFGSATTDNHNPMKD------------IEVTSSPDDSIGCLSFSPPTLP 53

Query: 199 -SVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKVVDFHWNASDPW 257
            +   + +    +  W+ +  G+ + +                 H   V+D  W+  D  
Sbjct: 54  GNFLIAGSWANDVRCWEVQDSGQTIPK---------AQQ----MHTGPVLDVCWS-DDGS 99

Query: 258 TVVSVSDDCDSTGGGGTLQIW 278
            V + S D        T ++W
Sbjct: 100 KVFTASCD-------KTAKMW 113

>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A Length = 351

 Score = 76.6 bits (189), Expect = 5e-16
 Identities = 30/206 (14%), Positives = 72/206 (34%), Gaps = 19/206 (9%)

Query: 86  IYNGHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTS--PVIKVEKAHDADLHCVD 143
             +GH+D V DV +     +   +   D  + ++     TS   +    +AHD+ +  +D
Sbjct: 6   FDSGHDDLVHDVVYDFYG-RHVATCSSDQHIKVFKLDKDTSNWELSDSWRAHDSSIVAID 64

Query: 144 WNPLDD-NLILTGSADNSVRMFD---RRNLTSNGVGSPINKFEGHSAAVLCVQWSPDKS- 198
           W   +   +I + S D +V++++    +   S    + +        ++  V+++P    
Sbjct: 65  WASPEYGRIIASASYDKTVKLWEEDPDQEECSGRRWNKLCTLNDSKGSLYSVKFAPAHLG 124

Query: 199 SVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKV--VDFHWNASDP 256
                   DG+L ++D  +          +      +    A H      + +  +   P
Sbjct: 125 LKLACLGNDGILRLYDALEPSDLRSWTLTSEMKVLSIPP--ANHLQSDFCLSWCPSRFSP 182

Query: 257 WTVVSVSDDCDSTGGGGTLQIWRMSD 282
             +   + +         +   R  D
Sbjct: 183 EKLAVSALE-------QAIIYQRGKD 201

>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A Length = 351

 Score = 72.7 bits (179), Expect = 1e-14
 Identities = 26/191 (13%), Positives = 66/191 (34%), Gaps = 29/191 (15%)

Query: 127 PVIK-VEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGHS 185
           P ++  +  HD  +H V ++      + T S+D  +++F              + +  H 
Sbjct: 1   PHMQPFDSGHDDLVHDVVYDF-YGRHVATCSSDQHIKVFKLD--KDTSNWELSDSWRAHD 57

Query: 186 AAVLCVQWSPDK-SSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRD 244
           ++++ + W+  +   +  S++ D  + +W+ E   ++   G R               + 
Sbjct: 58  SSIVAIDWASPEYGRIIASASYDKTVKLWE-EDPDQEECSGRRWN-----KLCTLNDSKG 111

Query: 245 KV--VDFHWNASDPW--TVVSVSDDCDSTGGGGTLQIWRMSD----LIYRPQDEVLAELE 296
            +  V F   A       +  + +D       G L+++   +      +    E+     
Sbjct: 112 SLYSVKF---APAHLGLKLACLGND-------GILRLYDALEPSDLRSWTLTSEMKVLSI 161

Query: 297 KFKAHVISCTS 307
               H+ S   
Sbjct: 162 PPANHLQSDFC 172

>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A Length = 351

 Score = 68.1 bits (167), Expect = 4e-13
 Identities = 41/296 (13%), Positives = 79/296 (26%), Gaps = 77/296 (26%)

Query: 26  SGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRG 85
           S   DK+V LW           +    +   S     K                      
Sbjct: 76  SASYDKTVKLW-----------EEDPDQEECSGRRWNKLCT------------------- 105

Query: 86  IYNGHEDTVEDVTFCPSSA-QEFCSVGDDSCLILWDARVGTS-----------PVIKVEK 133
             N  + ++  V F P+    +   +G+D  L L+DA   +             +     
Sbjct: 106 -LNDSKGSLYSVKFAPAHLGLKLACLGNDGILRLYDALEPSDLRSWTLTSEMKVLSIPPA 164

Query: 134 AHDADLHCVDWNP--LDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGHSAAVLCV 191
            H     C+ W P       +   + + ++          +G      K  GH + +  +
Sbjct: 165 NHLQSDFCLSWCPSRFSPEKLAVSALEQAIIYQR----GKDGKLHVAAKLPGHKSLIRSI 220

Query: 192 QWSPDKSSVFG---SSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKVVD 248
            W+P     +    +  +DG + I+        + +                        
Sbjct: 221 SWAPSIGRWYQLIATGCKDGRIRIFK-------ITEKLSP--------LASEESLTNSNM 265

Query: 249 FHWNASDPWTVVSVSDDCDSTGGGGTLQIWRMSDLIYRPQDEVLAELEKFKAHVIS 304
           F   ++D         D        T +   +       Q E+L+E +     V S
Sbjct: 266 FDN-SADVDMDAQGRSD------SNTEEKAELQS---NLQVELLSEHDDHNGEVWS 311

>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A Length = 351

 Score = 64.2 bits (157), Expect = 8e-12
 Identities = 30/217 (13%), Positives = 75/217 (34%), Gaps = 33/217 (15%)

Query: 23  YVLSGGKDKSVVLWSIQDHIT------SSATDPATAKSAGSSGSI--IKQSPKPGDG--- 71
            +   G D  + L+   +         +S     +   A    S   +   P        
Sbjct: 126 KLACLGNDGILRLYDALEPSDLRSWTLTSEMKVLSIPPANHLQSDFCLSWCPSRFSPEKL 185

Query: 72  ----NDK------AADGPSVGPRGIYNGHEDTVEDVTFCPSSAQEFC---SVGDDSCLIL 118
                ++        DG  +       GH+  +  +++ PS  + +    +   D  + +
Sbjct: 186 AVSALEQAIIYQRGKDG-KLHVAAKLPGHKSLIRSISWAPSIGRWYQLIATGCKDGRIRI 244

Query: 119 WDARVGTSPVIKVEKAHDADLHCVDWNP-LDDNLILTGSADNSVRMFDRRNLTSNGVGSP 177
           +      SP+     + ++  +   ++   D ++   G +D++        L SN     
Sbjct: 245 FKITEKLSPL----ASEESLTNSNMFDNSADVDMDAQGRSDSNTEEKAE--LQSNLQVEL 298

Query: 178 INKFEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWD 214
           +++ + H+  V  V W+    ++  S+ +DG + +W 
Sbjct: 299 LSEHDDHNGEVWSVSWNLT-GTILSSAGDDGKVRLWK 334

>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A Length = 351

 Score = 41.1 bits (97), Expect = 3e-04
 Identities = 25/149 (16%), Positives = 47/149 (31%), Gaps = 19/149 (12%)

Query: 1   MEILTGHQDNAE---FALAMCPTEPYVLSGGKDKSVVLWSI----------QDHITSSAT 47
              L GH+       +A ++      + +G KD  + ++ I          +    S+  
Sbjct: 207 AAKLPGHKSLIRSISWAPSIGRWYQLIATGCKDGRIRIFKITEKLSPLASEESLTNSNMF 266

Query: 48  DPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQEF 107
           D +      + G     S    +   +      V     ++ H   V  V++  +     
Sbjct: 267 DNSADVDMDAQGR----SDSNTEEKAELQSNLQVELLSEHDDHNGEVWSVSWNLTG-TIL 321

Query: 108 CSVGDDSCLILWDARVGTSPV-IKVEKAH 135
            S GDD  + LW A        + V  A 
Sbjct: 322 SSAGDDGKVRLWKATYSNEFKCMSVITAQ 350

>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A Length = 420

 Score = 76.9 bits (190), Expect = 5e-16
 Identities = 38/284 (13%), Positives = 79/284 (27%), Gaps = 46/284 (16%)

Query: 4   LTGHQDNAEFALAMCPTEPYVLSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIK 63
           L GH+      +A+      VLS   D ++ LW           +  T    G++     
Sbjct: 177 LIGHRATV-TDIAIIDRGRNVLSASLDGTIRLW-----------ECGT----GTTIHTFN 220

Query: 64  QSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARV 123
           +   P DG +  A       + ++        ++ F         +      + + +   
Sbjct: 221 RKENPHDGVNSIALFVGTDRQ-LHEISTSKKNNLEFGTYGKY-VIAGHVSGVITVHNVFS 278

Query: 124 GTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEG 183
                I++        + +  +  + N I  G  +  +  +D      +           
Sbjct: 279 KE-QTIQLPSKFTCSCNSLTVDGNNANYIYAGYENGMLAQWD----LRSPECPVGEFLIN 333

Query: 184 HSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHR 243
               +  V ++     V  SS  D  + +        + E+       P  L      + 
Sbjct: 334 EGTPINNVYFAAGALFV--SSGFDTSIKLDIIS--DPESERPAIEFETPTFL----VSND 385

Query: 244 DKVVDFHWNASDPWTVVSVSDDCD-----STGGGGTLQIWRMSD 282
           D V               VSDD         G      ++ +S+
Sbjct: 386 DAV----------SQFCYVSDDESNGEVLEVGKNNFCALYNLSN 419

>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A Length = 420

 Score = 64.2 bits (157), Expect = 8e-12
 Identities = 31/194 (15%), Positives = 55/194 (28%), Gaps = 43/194 (22%)

Query: 89  GHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLD 148
              D  +  TF             D    L++  +                         
Sbjct: 54  RGVDAGKGNTFEKVG-SHLYKARLDGHDFLFNTIIRDG---SKMLKRADYTAVDTAKL-Q 108

Query: 149 DNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAEDG 208
               + G+ +  +++ D                + H + +  +++ P       SS++D 
Sbjct: 109 MRRFILGTTEGDIKVLDSNF------NLQREIDQAHVSEITKLKFFPS-GEALISSSQDM 161

Query: 209 LLNIWDYEKVGKKVEQG--PRTTNYPAGLFFQHAGHRDKV--VDFHWNASDPWTVVSVSD 264
            L IW        V+ G  PRT            GHR  V  +           V+S S 
Sbjct: 162 QLKIWS-------VKDGSNPRTLI----------GHRATVTDIAII---DRGRNVLSASL 201

Query: 265 DCDSTGGGGTLQIW 278
           D       GT+++W
Sbjct: 202 D-------GTIRLW 208

>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A Length = 420

 Score = 39.9 bits (94), Expect = 6e-04
 Identities = 12/136 (8%), Positives = 31/136 (22%), Gaps = 32/136 (23%)

Query: 148 DDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGHSA---AVLCVQWSPDKSSVFGSS 204
           D   +L  + +N    +   +   N +        G+S    A     +     S    +
Sbjct: 16  DFKAVLEENDENDDEFYINVDKNLNEIKEHKIVVLGNSRGVDAGKGNTFEKV-GSHLYKA 74

Query: 205 AEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKV--VDFHWNASDPWTVVSV 262
             DG   +++                       +     D                 +  
Sbjct: 75  RLDGHDFLFNTII----------------RDGSKMLKRADYTAVDTA---KLQMRRFILG 115

Query: 263 SDDCDSTGGGGTLQIW 278
           + +       G +++ 
Sbjct: 116 TTE-------GDIKVL 124

>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R Length = 343

 Score = 76.5 bits (189), Expect = 5e-16
 Identities = 61/292 (20%), Positives = 94/292 (32%), Gaps = 83/292 (28%)

Query: 3   ILTGHQDN-----AEFALAMCPTEPYVLSGGKDKSVVLWSIQDHITSSATDPATAKSAGS 57
           IL GH D      A F+       P ++SG +DK+V++W                +  G 
Sbjct: 16  ILEGHSDWVTSIVAGFSQKENEDSPVLISGSRDKTVMIW-----------KLYEEEQNGY 64

Query: 58  SGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQEFCSVGDDSCLI 117
            G   K                         GH   V D+     +     S   D  L 
Sbjct: 65  FGIPHK----------------------ALTGHNHFVSDLALSQEN-CFAISSSWDKTLR 101

Query: 118 LWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSP 177
           LWD R GT+   K    H ++++ V ++P D+  IL+  A+  +++++            
Sbjct: 102 LWDLRTGTT--YKRFVGHQSEVYSVAFSP-DNRQILSAGAEREIKLWN----ILGECKFS 154

Query: 178 INKFEGHSAAVLCVQWSPDKSSVFG---------SSAEDGLLNIWDYEKVGKKVEQGPRT 228
             + E HS  V CV++SP   S            S   DG L +W+            R 
Sbjct: 155 SAEKENHSDWVSCVRYSPIMKSANKVQPFAPYFASVGWDGRLKVWN-------TNFQIRY 207

Query: 229 TNYPAGLFFQHAGHRDKV--VDFHWNASDPWTVVSVSDDCDSTGGGGTLQIW 278
           T            H   V  +    N      + +   D         L IW
Sbjct: 208 T---------FKAHESNVNHLSISPNGK---YIATGGKD-------KKLLIW 240

>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R Length = 343

 Score = 66.5 bits (163), Expect = 1e-12
 Identities = 29/201 (14%), Positives = 66/201 (32%), Gaps = 35/201 (17%)

Query: 89  GHEDTVEDVTFCPSSAQEFC---------SVGDDSCLILWDARVGTSPVIKVEKAHDADL 139
            H D V  V + P                SVG D  L +W+       +    KAH++++
Sbjct: 160 NHSDWVSCVRYSPIMKSANKVQPFAPYFASVGWDGRLKVWNT---NFQIRYTFKAHESNV 216

Query: 140 HCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWSPDKSS 199
           + +  +P +   I TG  D  + ++D  N       +   +     + +  + ++P    
Sbjct: 217 NHLSISP-NGKYIATGGKDKKLLIWDILN------LTYPQREFDAGSTINQIAFNPKLQW 269

Query: 200 VFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKV--VDFHWNASDPW 257
           V  +   D  + I++     +           P        G   +   + ++   +   
Sbjct: 270 V--AVGTDQGVKIFNLM--TQSKAPVCTIEAEPITKAEGQKGKNPQCTSLAWN---ALGK 322

Query: 258 TVVSVSDDCDSTGGGGTLQIW 278
            + +   D       G ++ +
Sbjct: 323 KLFAGFTD-------GVIRTF 336

>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R Length = 343

 Score = 63.0 bits (154), Expect = 2e-11
 Identities = 40/214 (18%), Positives = 71/214 (33%), Gaps = 47/214 (21%)

Query: 84  RGIYNGHEDTVEDVTFCPSSA-----QEFCSVGDDSCLILWDARVGTSP-----VIKVEK 133
           RGI  GH D V  +    S           S   D  +++W               K   
Sbjct: 14  RGILEGHSDWVTSIVAGFSQKENEDSPVLISGSRDKTVMIWKLYEEEQNGYFGIPHKALT 73

Query: 134 AHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQW 193
            H+  +  +  +  ++   ++ S D ++R++D R       G+   +F GH + V  V +
Sbjct: 74  GHNHFVSDLALSQ-ENCFAISSSWDKTLRLWDLRT------GTTYKRFVGHQSEVYSVAF 126

Query: 194 SPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKV--VDF-- 249
           SPD   +  S+  +  + +W+      K     +              H D V  V +  
Sbjct: 127 SPDNRQIL-SAGAEREIKLWNILG-ECKFSSAEKE------------NHSDWVSCVRYSP 172

Query: 250 -----HWNASDPWTVVSVSDDCDSTGGGGTLQIW 278
                +          SV  D       G L++W
Sbjct: 173 IMKSANKVQPFAPYFASVGWD-------GRLKVW 199

>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R Length = 343

 Score = 52.6 bits (127), Expect = 4e-08
 Identities = 23/109 (21%), Positives = 41/109 (37%), Gaps = 13/109 (11%)

Query: 112 DDSCLILWDARVGT-----SPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFD- 165
           D+S L +   + G        V  +             N  D  ++++GS D +V ++  
Sbjct: 3   DNSSLDIQVVKRGILEGHSDWVTSI-----VAGFSQKENE-DSPVLISGSRDKTVMIWKL 56

Query: 166 RRNLTSNGVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWD 214
                +   G P     GH+  V  +  S + +    SS+ D  L +WD
Sbjct: 57  YEEEQNGYFGIPHKALTGHNHFVSDLALSQE-NCFAISSSWDKTLRLWD 104

>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R Length = 343

 Score = 43.0 bits (102), Expect = 6e-05
 Identities = 29/194 (14%), Positives = 52/194 (26%), Gaps = 46/194 (23%)

Query: 4   LTGHQD---------NAEFALAMCPTEPYVLSGGKDKSVVLWSIQDHITSSATDPATAKS 54
              H D           + A  + P  PY  S G D  + +W+                 
Sbjct: 158 KENHSDWVSCVRYSPIMKSANKVQPFAPYFASVGWDGRLKVWN--------TNFQIRYTF 209

Query: 55  AGSSGSI--IKQSPKPGDG-------NDKAA---DGPSVGPRGIYNGHEDTVEDVTFCPS 102
                ++  +  SP   +G        DK     D  ++           T+  + F P 
Sbjct: 210 KAHESNVNHLSISP---NGKYIATGGKDKKLLIWDILNLTYPQREFDAGSTINQIAFNPK 266

Query: 103 SAQEFCSVGDDSCLILWDARVG-----------TSPVIKVEKAHDADLHCVDWNPLDDNL 151
             Q     G D  + +++                    + +K  +     + WN      
Sbjct: 267 L-QWVAV-GTDQGVKIFNLMTQSKAPVCTIEAEPITKAEGQKGKNPQCTSLAWNA-LGKK 323

Query: 152 ILTGSADNSVRMFD 165
           +  G  D  +R F 
Sbjct: 324 LFAGFTDGVIRTFS 337

>3jrp_A Fusion protein of protein transport protein SEC13 and nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae} Length = 379

 Score = 76.2 bits (188), Expect = 8e-16
 Identities = 44/310 (14%), Positives = 88/310 (28%), Gaps = 60/310 (19%)

Query: 3   ILTGHQDNAEFALAMCPTEPYVLSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSII 62
           I   H +       +      + +   DK++ ++ ++       T        G  G + 
Sbjct: 6   IANAHNELI-HDAVLDYYGKRLATCSSDKTIKIFEVE-----GETHKLIDTLTGHEGPVW 59

Query: 63  KQS---PKPGD-----GNDK------AADGPSVGPRGIYNGHEDTVEDVTFCPSSA-QEF 107
           +     PK G        D         +G       ++  H  +V  V + P       
Sbjct: 60  RVDWAHPKFGTILASCSYDGKVLIWKEENGRWSQIA-VHAVHSASVNSVQWAPHEYGPLL 118

Query: 108 CSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNP------------LDDNLILTG 155
                D  + + + +   +    +  AH   ++   W P             +    +TG
Sbjct: 119 LVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTG 178

Query: 156 SADNSVRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWSPD--KSSVFGSSAEDGLLNIW 213
            ADN V+++     +        +  EGHS  V  V WSP     S   S ++D    IW
Sbjct: 179 GADNLVKIWKYN--SDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYLASVSQDRTCIIW 236

Query: 214 DYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKV--VDFHWNASDPWTVVSVSDDCDSTGG 271
             +      ++                   D +    +         +     D      
Sbjct: 237 TQDNEQGPWKKTLLK----------EEKFPDVLWRASWS---LSGNVLALSGGD------ 277

Query: 272 GGTLQIWRMS 281
              + +W+ +
Sbjct: 278 -NKVTLWKEN 286

>3jrp_A Fusion protein of protein transport protein SEC13 and nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae} Length = 379

 Score = 72.7 bits (179), Expect = 1e-14
 Identities = 35/223 (15%), Positives = 76/223 (34%), Gaps = 30/223 (13%)

Query: 86  IYNGHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWN 145
           I N H + + D        +   +   D  + +++    T  +I     H+  +  VDW 
Sbjct: 6   IANAHNELIHDAVLDYYG-KRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWA 64

Query: 146 P-LDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWSPDKS-SVFGS 203
                 ++ + S D  V ++       NG  S I     HSA+V  VQW+P +   +   
Sbjct: 65  HPKFGTILASCSYDGKVLIWK----EENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLV 120

Query: 204 SAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKV--VDFHWNASDPWTVVS 261
           ++ DG +++ +++                + +      H   V    +     +     +
Sbjct: 121 ASSDGKVSVVEFK-----------ENGTTSPIIID--AHAIGVNSASWAPATIEEDGEHN 167

Query: 262 VSDDCD---STGGGGTLQIWRMSDLIYRPQDEVLAELEKFKAH 301
            + +     + G    ++IW+     Y    +        + H
Sbjct: 168 GTKESRKFVTGGADNLVKIWK-----YNSDAQTYVLESTLEGH 205

>3jrp_A Fusion protein of protein transport protein SEC13 and nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae} Length = 379

 Score = 59.3 bits (144), Expect = 4e-10
 Identities = 32/177 (18%), Positives = 50/177 (28%), Gaps = 40/177 (22%)

Query: 88  NGHEDTVEDVTFCPSSAQEFC--SVGDDSCLILWDARVGTSPVIKV---EKAHDADLHCV 142
            GH D V DV + P+        SV  D   I+W       P  K    E+     L   
Sbjct: 203 EGHSDWVRDVAWSPTVLLRSYLASVSQDRTCIIWTQDNEQGPWKKTLLKEEKFPDVLWRA 262

Query: 143 DWNPLDDNLILTGSADNSVRMFDRRNLTSN--------------------------GVGS 176
            W+    N++     DN V ++   NL                                +
Sbjct: 263 SWSL-SGNVLALSGGDNKVTLWKE-NLEGKWEPAGEVHQGGGGSGGGGATSKEFDGPCQN 320

Query: 177 PINKFEGHSAAVLCVQWSPDKSSVFGSS------AEDGLLNIWDYE-KVGKKVEQGP 226
            I+         +       K   F +S      +   +L   D   K G  +++ P
Sbjct: 321 EIDLLFSECNDEIDNAKLIMKERRFTASYTFAKFSTGSMLLTKDIVGKSGVSIKRLP 377

>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A Length = 342

 Score = 75.3 bits (185), Expect = 1e-15
 Identities = 25/230 (10%), Positives = 64/230 (27%), Gaps = 28/230 (12%)

Query: 73  DKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPVIKVE 132
                  +V        ++  +    F  ++  +         ++  D  +  SP  +  
Sbjct: 39  KFDIQAKNVDLLQSLR-YKHPLLCCNFIDNTDLQIYVGTVQGEILKVD--LIGSPSFQAL 95

Query: 133 KAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQ 192
             ++A+L         D+ ++  S D  + + D R          +     ++  V    
Sbjct: 96  TNNEANLGICRICKYGDDKLIAASWDGLIEVIDPR--NYGDGVIAVKNLNSNNTKVKNKI 153

Query: 193 WSPD-KSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKVVDFHW 251
           ++ D  SS       +  +  +                        + +G + ++ D   
Sbjct: 154 FTMDTNSSRLIVGMNNSQVQWFRLPLCEDDNGT------------IEESGLKYQIRDVAL 201

Query: 252 NASDPWTVVSVSDDCDSTGGGGTLQIWRMSDLIYRPQDEVLAELEKFKAH 301
              +       S D       G + +    D   +  D   ++   F+ H
Sbjct: 202 LPKEQEGYACSSID-------GRVAVEFFDD---QGDDYNSSKRFAFRCH 241

>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A Length = 342

 Score = 74.9 bits (184), Expect = 2e-15
 Identities = 25/182 (13%), Positives = 54/182 (29%), Gaps = 21/182 (11%)

Query: 86  IYNGHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPVIKVEK-AHDADLHCVDW 144
           I    +D + D+   PS +        D  L ++   +    V  ++   +   L C ++
Sbjct: 6   IEQAPKDYISDIKIIPSKSL-LLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNF 64

Query: 145 NPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWSPDKSSVFGSS 204
               D  I  G+    +   D                  + A +   +          ++
Sbjct: 65  IDNTDLQIYVGTVQGEILKVDLIG------SPSFQALTNNEANLGICRICKYGDDKLIAA 118

Query: 205 AEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKV--VDFHWNASDPWTVVSV 262
           + DGL+ + D           PR              +  KV    F  + +    +V +
Sbjct: 119 SWDGLIEVID-----------PRNYGDGVIAVKNLNSNNTKVKNKIFTMDTNSSRLIVGM 167

Query: 263 SD 264
           ++
Sbjct: 168 NN 169

>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A Length = 342

 Score = 64.9 bits (158), Expect = 4e-12
 Identities = 47/289 (16%), Positives = 85/289 (29%), Gaps = 43/289 (14%)

Query: 19  PTEPYVLSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPG-------DG 71
            T+  +  G     ++     D I S +    T   A                     DG
Sbjct: 67  NTDLQIYVGTVQGEILKV---DLIGSPSFQALTNNEANLG-ICRICKYGDDKLIAASWDG 122

Query: 72  N----DKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQEFCSVG-DDSCLILWDARVGTS 126
                D    G  V      N +   V++  F   +      VG ++S +  +   +   
Sbjct: 123 LIEVIDPRNYGDGVIAVKNLNSNNTKVKNKIFTMDTNSSRLIVGMNNSQVQWFRLPLCED 182

Query: 127 PVIKV-EKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGH- 184
               + E      +  V   P +       S D  V +    +   +   S    F  H 
Sbjct: 183 DNGTIEESGLKYQIRDVALLPKEQEGYACSSIDGRVAVEFFDDQGDDYNSSKRFAFRCHR 242

Query: 185 --------SAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLF 236
                   +  V  +++SP       ++  DG+++ W+ +   KK++   +         
Sbjct: 243 LNLKDTNLAYPVNSIEFSPR-HKFLYTAGSDGIISCWNLQT-RKKIKNFAK--------- 291

Query: 237 FQHAGHRDKVVDFHWNASDPWTVVSVSDDCDSTGGGGTLQIWRMSDLIY 285
                + D VV      SD    ++ SDD   T       I   +  IY
Sbjct: 292 ----FNEDSVVKI--ACSDNILCLATSDDTFKTNAAIDQTIELNASSIY 334

>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A Length = 342

 Score = 61.8 bits (150), Expect = 4e-11
 Identities = 13/138 (9%), Positives = 35/138 (25%), Gaps = 26/138 (18%)

Query: 141 CVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWSPDKSSV 200
            +   P   +L+L  S D S+ ++             + +   +   +LC  +  +    
Sbjct: 16  DIKIIP-SKSLLLITSWDGSLTVYK---FDIQAKNVDLLQSLRYKHPLLCCNFIDNTDLQ 71

Query: 201 FGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKVVDFHWNASDPWTVV 260
                  G +   D        +                  +   +            ++
Sbjct: 72  IYVGTVQGEILKVDLIG-SPSFQAL--------------TNNEANLGICRICKYGDDKLI 116

Query: 261 SVSDDCDSTGGGGTLQIW 278
           + S D       G +++ 
Sbjct: 117 AASWD-------GLIEVI 127

>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae} Length = 437

 Score = 75.6 bits (186), Expect = 1e-15
 Identities = 40/292 (13%), Positives = 79/292 (27%), Gaps = 78/292 (26%)

Query: 4   LTGHQDNAEFALAMCPTE-PYVLSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSII 62
           L  ++ N+  + A+ P E PY+++G     + +W+++                       
Sbjct: 58  LMENEPNSITSSAVSPGETPYLITGSDQGVIKIWNLK----------------------- 94

Query: 63  KQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDAR 122
                      +   G        Y     TV  +T  P+    F     D  +I+    
Sbjct: 95  -----------EIIVGEVYSSSLTY-DCSSTVTQITMIPNF-DAFAVSSKDGQIIVLKVN 141

Query: 123 VGTSPV--------------IKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRN 168
                               +K    ++  +    +   + +L++  +  + V +FD R 
Sbjct: 142 HYQQESEVKFLNCECIRKINLKNFGKNEYAVRMRAFVNEEKSLLVALTNLSRVIIFDIRT 201

Query: 169 LTSNGVGSPINKFEG--HSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGP 226
                    +   E      AV  +    +   +       G+++IWD            
Sbjct: 202 ------LERLQIIENSPRHGAVSSICIDEECCVLI-LGTTRGIIDIWDI----------- 243

Query: 227 RTTNYPAGLFFQHAGHRDKVVDFHWNASDPWTVVSVSDDCDSTGGGGTLQIW 278
           R         F        V    +   +   VV  S           L IW
Sbjct: 244 RFNVLIRSWSFGDHAPITHVEVCQFYGKNSVIVVGGSSK-------TFLTIW 288

>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae} Length = 437

 Score = 52.1 bits (125), Expect = 9e-08
 Identities = 20/142 (14%), Positives = 39/142 (27%), Gaps = 23/142 (16%)

Query: 139 LHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKF-EGHSAAVLCVQWSPDK 197
           L      P   +    G     VR  +  NL     G  I    E    ++     SP +
Sbjct: 20  LSTFKILPPLRDYKEFGPIQEIVRSPNMGNLR----GKLIATLMENEPNSITSSAVSPGE 75

Query: 198 SSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKVVDFHWNASDPW 257
           +    + ++ G++ IW+ +++          T                V        +  
Sbjct: 76  TPYLITGSDQGVIKIWNLKEIIVGEVYSSSLT----------YDCSSTVTQITMI-PNFD 124

Query: 258 TVVSVSDDCDSTGGGGTLQIWR 279
                S D       G + + +
Sbjct: 125 AFAVSSKD-------GQIIVLK 139

>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae} Length = 437

 Score = 51.3 bits (123), Expect = 1e-07
 Identities = 27/349 (7%), Positives = 75/349 (21%), Gaps = 90/349 (25%)

Query: 4   LTGHQDNAEFALAMCPTEPYVLSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIK 63
           LT    +    + M P         KD  +++  + +H    +             ++  
Sbjct: 106 LTYDCSSTVTQITMIPNFDAFAVSSKDGQIIVLKV-NHYQQESEVKFLNCECIRKINLKN 164

Query: 64  QSPKPGDGNDKA--ADGPSVGPRGIYNG--------------------HEDTVEDVTFCP 101
                     +A   +  S+                                V  +    
Sbjct: 165 FGKNEYAVRMRAFVNEEKSLLVALTNLSRVIIFDIRTLERLQIIENSPRHGAVSSICIDE 224

Query: 102 SSAQEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPL---DDNLILTGSAD 158
                         + +WD R     +        A +  V+       +  +++ GS+ 
Sbjct: 225 EC-CVLILGTTRGIIDIWDIRFNV-LIRSWSFGDHAPITHVEVCQFYGKNSVIVVGGSSK 282

Query: 159 NSVRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWSPDKSS------------------- 199
             + +++         G     F           + P +                     
Sbjct: 283 TFLTIWNFVK------GHCQYAFINSDEQPSMEHFLPIEKGLEELNFCGIRSLNALSTIS 336

Query: 200 -----VFGSSAEDGLLNIWDYE---------------------KVGKKVEQGPRTTNYPA 233
                +  +      + ++                        +V   +    R     +
Sbjct: 337 VSNDKILLTDEATSSIVMFSLNELSSSKAVISPSRFSDVFIPTQVTANLTMLLRKMKRTS 396

Query: 234 GLFFQHA-GHRDKV--VDFHWNASDPWTVVSVSDDCDSTGGGGTLQIWR 279
                 +  H D +  +       +   +V+  +        G + I++
Sbjct: 397 THSVDDSLYHHDIINSISTC-EVDETPLLVACDNS-------GLIGIFQ 437

>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1 Length = 410

 Score = 74.9 bits (185), Expect = 2e-15
 Identities = 31/126 (24%), Positives = 59/126 (46%), Gaps = 11/126 (8%)

Query: 89  GHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLD 148
           GH D+V+D++F  S  +   S   D  + LWD +      I+    HD ++  V   P +
Sbjct: 148 GHTDSVQDISFDHSG-KLLASCSADMTIKLWDFQGFE--CIRTMHGHDHNVSSVSIMP-N 203

Query: 149 DNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAEDG 208
            + I++ S D +++M++ +       G  +  F GH   V  V+ + D  ++  S + D 
Sbjct: 204 GDHIVSASRDKTIKMWEVQT------GYCVKTFTGHREWVRMVRPNQD-GTLIASCSNDQ 256

Query: 209 LLNIWD 214
            + +W 
Sbjct: 257 TVRVWV 262

>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1 Length = 410

 Score = 72.6 bits (179), Expect = 1e-14
 Identities = 45/212 (21%), Positives = 71/212 (33%), Gaps = 56/212 (26%)

Query: 88  NGHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPL 147
           +GH+  V  V+  P+      S   D  + +W+ + G    +K    H   +  V  N  
Sbjct: 189 HGHDHNVSSVSIMPNG-DHIVSASRDKTIKMWEVQTGYC--VKTFTGHREWVRMVRPNQ- 244

Query: 148 DDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAE- 206
           D  LI + S D +VR++               +   H   V C+ W+P+ S    S A  
Sbjct: 245 DGTLIASCSNDQTVRVWVVAT------KECKAELREHRHVVECISWAPESSYSSISEATG 298

Query: 207 ------------------DGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKV-- 246
                             D  + +WD    G                     GH + V  
Sbjct: 299 SETKKSGKPGPFLLSGSRDKTIKMWDVST-GM--------------CLMTLVGHDNWVRG 343

Query: 247 VDFHWNASDPWTVVSVSDDCDSTGGGGTLQIW 278
           V FH   S    ++S +DD        TL++W
Sbjct: 344 VLFH---SGGKFILSCADD-------KTLRVW 365

>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1 Length = 410

 Score = 72.2 bits (178), Expect = 2e-14
 Identities = 38/249 (15%), Positives = 82/249 (32%), Gaps = 66/249 (26%)

Query: 4   LTGHQDNAEFALAMCPTEPYVLSGGKDKSVVLWSIQDHITSSATDPATAKS----AGSSG 59
           + GH  N   ++++ P   +++S  +DK++ +W           +  T        G   
Sbjct: 188 MHGHDHNV-SSVSIMPNGDHIVSASRDKTIKMW-----------EVQTGYCVKTFTGHRE 235

Query: 60  SI--IKQSPKPGDG-------NDK------AADGPSVGPRGIYNGHEDTVEDVTFCPSSA 104
            +  ++ +    DG       ND+       A             H   VE +++ P S+
Sbjct: 236 WVRMVRPNQ---DGTLIASCSNDQTVRVWVVATKECKAE---LREHRHVVECISWAPESS 289

Query: 105 QEFC-------------------SVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWN 145
                                  S   D  + +WD   G    +     HD  +  V ++
Sbjct: 290 YSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGM--CLMTLVGHDNWVRGVLFH 347

Query: 146 PLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSA 205
                 IL+ + D ++R++D +N         +     H   V  + +    +    + +
Sbjct: 348 S-GGKFILSCADDKTLRVWDYKN------KRCMKTLNAHEHFVTSLDFHKT-APYVVTGS 399

Query: 206 EDGLLNIWD 214
            D  + +W+
Sbjct: 400 VDQTVKVWE 408

>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1 Length = 410

 Score = 69.9 bits (172), Expect = 1e-13
 Identities = 41/192 (21%), Positives = 75/192 (39%), Gaps = 38/192 (19%)

Query: 89  GHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLD 148
           GH   V  V F P       S  +D+ + +WD   G     +  K H   +  + ++   
Sbjct: 106 GHRSPVTRVIFHPVF-SVMVSASEDATIKVWDYETGD--FERTLKGHTDSVQDISFDH-S 161

Query: 149 DNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAEDG 208
             L+ + SAD +++++D +          I    GH   V  V   P+      S++ D 
Sbjct: 162 GKLLASCSADMTIKLWDFQG------FECIRTMHGHDHNVSSVSIMPN-GDHIVSASRDK 214

Query: 209 LLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKV--VDFHWNASDPWTVVSVSDDC 266
            + +W+ +  G  V    +T        F   GHR+ V  V  + + +    + S S+D 
Sbjct: 215 TIKMWEVQT-GYCV----KT--------FT--GHREWVRMVRPNQDGT---LIASCSND- 255

Query: 267 DSTGGGGTLQIW 278
                  T+++W
Sbjct: 256 ------QTVRVW 261

>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1 Length = 410

 Score = 59.1 bits (144), Expect = 4e-10
 Identities = 29/172 (16%), Positives = 63/172 (36%), Gaps = 38/172 (22%)

Query: 109 SVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRN 168
            +G       W       P       H + +  V ++P   +++++ S D +++++D   
Sbjct: 84  PLGQKRDPKEWIP---RPPEKYALSGHRSPVTRVIFHP-VFSVMVSASEDATIKVWDYET 139

Query: 169 LTSNGVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRT 228
                 G      +GH+ +V  + +      +  S + D  + +WD++   + +    RT
Sbjct: 140 ------GDFERTLKGHTDSVQDISFDHS-GKLLASCSADMTIKLWDFQG-FECI----RT 187

Query: 229 TNYPAGLFFQHAGHRDKV--VDFHWNASDPWTVVSVSDDCDSTGGGGTLQIW 278
            +          GH   V  V       +   +VS S D        T+++W
Sbjct: 188 MH----------GHDHNVSSVSIM---PNGDHIVSASRDK-------TIKMW 219

>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1 Length = 410

 Score = 58.0 bits (141), Expect = 1e-09
 Identities = 35/189 (18%), Positives = 70/189 (37%), Gaps = 33/189 (17%)

Query: 4   LTGHQDNAEFALAMCPTEPYVLSGGKDKSVVLWSIQ------------DHITSSATDPAT 51
            TGH++     +        + S   D++V +W +               +   +  P +
Sbjct: 230 FTGHREWV-RMVRPNQDGTLIASCSNDQTVRVWVVATKECKAELREHRHVVECISWAPES 288

Query: 52  AKSAGSSGSIIKQSPKPGDG-------NDK------AADGPSVGPRGIYNGHEDTVEDVT 98
           + S+ S  +  +       G        DK       + G  +       GH++ V  V 
Sbjct: 289 SYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMT---LVGHDNWVRGVL 345

Query: 99  FCPSSAQEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSAD 158
           F     +   S  DD  L +WD +      +K   AH+  +  +D++      ++TGS D
Sbjct: 346 FHSGG-KFILSCADDKTLRVWDYKNKR--CMKTLNAHEHFVTSLDFHK-TAPYVVTGSVD 401

Query: 159 NSVRMFDRR 167
            +V++++ R
Sbjct: 402 QTVKVWECR 410

>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A Length = 316

 Score = 74.2 bits (183), Expect = 3e-15
 Identities = 27/133 (20%), Positives = 53/133 (39%), Gaps = 7/133 (5%)

Query: 86  IYNGHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWN 145
           +   HED + D            +   D  + ++D R G   +I   + H+  +  V W 
Sbjct: 8   VDTSHEDMIHDAQMDYYG-TRLATCSSDRSVKIFDVRNGGQILIADLRGHEGPVWQVAWA 66

Query: 146 P-LDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWSPDKS-SVFGS 203
             +  N++ + S D  V ++       NG     ++  GH ++V  V W+P     +   
Sbjct: 67  HPMYGNILASCSYDRKVIIWR----EENGTWEKSHEHAGHDSSVNSVCWAPHDYGLILAC 122

Query: 204 SAEDGLLNIWDYE 216
            + DG +++  Y 
Sbjct: 123 GSSDGAISLLTYT 135

>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A Length = 316

 Score = 71.5 bits (176), Expect = 2e-14
 Identities = 60/323 (18%), Positives = 91/323 (28%), Gaps = 84/323 (26%)

Query: 3   ILTGHQDNAEFALAMCPTEPYVLSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSII 62
           + T H+D       M      + +   D+SV ++ ++          A  +         
Sbjct: 8   VDTSHEDMI-HDAQMDYYGTRLATCSSDRSVKIFDVR---NGGQILIADLR--------- 54

Query: 63  KQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSA-QEFCSVGDDSCLILWDA 121
                                     GHE  V  V +          S   D  +I+W  
Sbjct: 55  --------------------------GHEGPVWQVAWAHPMYGNILASCSYDRKVIIWRE 88

Query: 122 RVGTSPVIKVEKAHDADLHCVDWNPLDDNLIL-TGSADNSVRMFDRRNLTSNGVGSPINK 180
             GT         HD+ ++ V W P D  LIL  GS+D ++ +          V      
Sbjct: 89  ENGTWEKSHEHAGHDSSVNSVCWAPHDYGLILACGSSDGAISLLTYTGEGQWEVKKI--- 145

Query: 181 FEGHSAAVLCVQWSPDKSSVFG----------------SSAEDGLLNIWDYEKVGKKVEQ 224
              H+     V W+P                       S   D L+ +W  E+ G+  E+
Sbjct: 146 NNAHTIGCNAVSWAPAVVPGSLIDHPSGQKPNYIKRFASGGCDNLIKLWKEEEDGQWKEE 205

Query: 225 GPRTTNYPAGLFFQHAGHRDKV--VDFHWNASDP-WTVVSVSDDCDSTGGGGTLQIWRMS 281
                            H D V  V +  +   P  T+ S S D       G + IW   
Sbjct: 206 QKLE------------AHSDWVRDVAWAPSIGLPTSTIASCSQD-------GRVFIWTCD 246

Query: 282 DLIYRPQDEVLAELEKFKAHVIS 304
           D            L KF   V  
Sbjct: 247 D--ASSNTWSPKLLHKFNDVVWH 267

>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A Length = 316

 Score = 69.2 bits (170), Expect = 1e-13
 Identities = 41/239 (17%), Positives = 72/239 (30%), Gaps = 46/239 (19%)

Query: 87  YNGHEDTVEDVTFCPSSA-QEFCSVGDDSCLILWDARVGTS-PVIKVEKAHDADLHCVDW 144
           + GH+ +V  V + P            D  + L          V K+  AH    + V W
Sbjct: 99  HAGHDSSVNSVCWAPHDYGLILACGSSDGAISLLTYTGEGQWEVKKINNAHTIGCNAVSW 158

Query: 145 NP----------------LDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGHSAAV 188
            P                       +G  DN ++++       +G      K E HS  V
Sbjct: 159 APAVVPGSLIDHPSGQKPNYIKRFASGGCDNLIKLWK---EEEDGQWKEEQKLEAHSDWV 215

Query: 189 LCVQWSPDKSSVFG---SSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDK 245
             V W+P          S ++DG + IW  +         P+  +             D 
Sbjct: 216 RDVAWAPSIGLPTSTIASCSQDGRVFIWTCDD-ASSNTWSPKLLH----------KFNDV 264

Query: 246 VVDFHWNASDPWTVVSVSDDCDSTGGGGTLQIWRMSDLIYRPQDEVLAELEKFKAHVIS 304
           V    W+      +     D         + +W+ S      Q   ++++ K +  V +
Sbjct: 265 VWHVSWSI-TANILAVSGGD-------NKVTLWKES---VDGQWVCISDVNKGQGSVSA 312

>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A Length = 316

 Score = 64.2 bits (157), Expect = 6e-12
 Identities = 30/202 (14%), Positives = 50/202 (24%), Gaps = 37/202 (18%)

Query: 26  SGGKDKSVVLWSIQDHITSSATDPATAKS----------AGSSGSIIKQSPKPGDGNDK- 74
            G  D ++ L +              A +          A   GS+I           K 
Sbjct: 122 CGSSDGAISLLTYTGEGQWEVKKINNAHTIGCNAVSWAPAVVPGSLIDHPSGQKPNYIKR 181

Query: 75  --------------AADGPSVGPRGIYNGHEDTVEDVTFCPSSAQEFC---SVGDDSCLI 117
                           +            H D V DV + PS         S   D  + 
Sbjct: 182 FASGGCDNLIKLWKEEEDGQWKEEQKLEAHSDWVRDVAWAPSIGLPTSTIASCSQDGRVF 241

Query: 118 LWDARVGTS--PVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVG 175
           +W     +S     K+    +  +  V W+    N++     DN V ++         V 
Sbjct: 242 IWTCDDASSNTWSPKLLHKFNDVVWHVSWSI-TANILAVSGGDNKVTLWKE------SVD 294

Query: 176 SPINKFEGHSAAVLCVQWSPDK 197
                    +     V  S  +
Sbjct: 295 GQWVCISDVNKGQGSVSASVTE 316

>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae} Length = 450

 Score = 74.7 bits (183), Expect = 3e-15
 Identities = 34/264 (12%), Positives = 68/264 (25%), Gaps = 33/264 (12%)

Query: 26  SGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAA---DGPSVG 82
           S    +    WS        + +    +  G S     ++ K       +          
Sbjct: 34  SPNHWEFAGKWSDDFDKIQESRNTTAKEQQGQSSENENENKKLKSNKGDSIKRTAAKVPS 93

Query: 83  PRGIYNGHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPVIKVEK--AHDADLH 140
           P          + ++      ++       D  L+++D    +  V+K+ K        +
Sbjct: 94  PGLGAPPIYSYIRNLRLTSDESRLIACADSDKSLLVFDVDKTSKNVLKLRKRFCFSKRPN 153

Query: 141 CVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWSPD--KS 198
            +     DD  ++       V   D  ++             GH + +  V    D    
Sbjct: 154 AISIAE-DDTTVIIADKFGDVYSIDINSIPEE--KFTQEPILGHVSMLTDVHLIKDSDGH 210

Query: 199 SVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKVVDFHWNASDPWT 258
               +S  D  + I  Y          P+       LF    GH+  V          + 
Sbjct: 211 QFIITSDRDEHIKISHY----------PQCFIVDKWLF----GHKHFVSSICC--GKDYL 254

Query: 259 VVSVSDDCDSTGGGGTLQIWRMSD 282
           ++S   D         +  W    
Sbjct: 255 LLSAGGD-------DKIFAWDWKT 271

>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae} Length = 450

 Score = 54.3 bits (130), Expect = 2e-08
 Identities = 21/199 (10%), Positives = 50/199 (25%), Gaps = 50/199 (25%)

Query: 23  YVLSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVG 82
            +     DKS++++ +                  +S +++K   +               
Sbjct: 117 LIACADSDKSLLVFDVD----------------KTSKNVLKLRKR--------------- 145

Query: 83  PRGIYNGHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVG--TSPVIKVEKAHDADLH 140
                         ++                 +   D           +    H + L 
Sbjct: 146 -----FCFSKRPNAISIAEDD-TTVIIADKFGDVYSIDINSIPEEKFTQEPILGHVSMLT 199

Query: 141 CVDWNP--LDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKF-EGHSAAVLCVQWSPDK 197
            V           I+T   D  +++              ++K+  GH   V  +    D 
Sbjct: 200 DVHLIKDSDGHQFIITSDRDEHIKISHYPQ------CFIVDKWLFGHKHFVSSICCGKDY 253

Query: 198 SSVFGSSAEDGLLNIWDYE 216
             +  S+  D  +  WD++
Sbjct: 254 LLL--SAGGDDKIFAWDWK 270

>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae} Length = 450

 Score = 45.5 bits (107), Expect = 1e-05
 Identities = 25/197 (12%), Positives = 49/197 (24%), Gaps = 47/197 (23%)

Query: 14  ALAMCPTEPYVLSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGND 73
           A+++   +  V+   K   V    I                   +   I           
Sbjct: 154 AISIAEDDTTVIIADKFGDVYSIDINSIPEE-----------KFTQEPIL---------- 192

Query: 74  KAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQE--FCSVGDDSCLILWDARVGTSPVIKV 131
                          GH   + DV     S       +   D  + +         V K 
Sbjct: 193 ---------------GHVSMLTDVHLIKDSDGHQFIITSDRDEHIKISHYPQCF-IVDKW 236

Query: 132 EKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGHSAAVLCV 191
              H   +  +      D L+L+   D+ +  +D +       G  ++ F+ +S     +
Sbjct: 237 LFGHKHFVSSICCGK--DYLLLSAGGDDKIFAWDWKT------GKNLSTFDYNSLIKPYL 288

Query: 192 QWSPDKSSVFGSSAEDG 208
                    F +   D 
Sbjct: 289 NDQHLAPPRFQNENNDI 305

>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli} Length = 694

 Score = 75.1 bits (185), Expect = 3e-15
 Identities = 53/265 (20%), Positives = 92/265 (34%), Gaps = 38/265 (14%)

Query: 24  VLSGGKDKSVVLWSIQD-----HITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADG 78
            L+     +  + + Q      +I   +      ++A  + +  +Q+        +    
Sbjct: 310 ELAKDPRIAATMENAQKGEIMPNIPQMSAFWYAVRTAVINAASGRQTVDAALAAAQTNAA 369

Query: 79  PSVGPRGIYNGHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPVIKVEKA---H 135
             +  +G    H D V  +     +A    S   D  +ILW            ++    H
Sbjct: 370 AGLVLKGTMRAHTDMVTAIATPIDNADIIVSASRDKSIILWKLTKDDKAYGVAQRRLTGH 429

Query: 136 DADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWSP 195
              +  V  +  D    L+GS D  +R++D         G    +F GH+  VL V +S 
Sbjct: 430 SHFVEDVVLSS-DGQFALSGSWDGELRLWDLAA------GVSTRRFVGHTKDVLSVAFSL 482

Query: 196 DKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKV--VDFHWNA 253
           D   +  S++ D  + +W+     K                    GHRD V  V F  N 
Sbjct: 483 DNRQIV-SASRDRTIKLWNTLGECKYTISEGGE------------GHRDWVSCVRFSPNT 529

Query: 254 SDPWTVVSVSDDCDSTGGGGTLQIW 278
             P T+VS S D        T+++W
Sbjct: 530 LQP-TIVSASWDK-------TVKVW 546

>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli} Length = 694

 Score = 62.8 bits (153), Expect = 4e-11
 Identities = 51/228 (22%), Positives = 85/228 (37%), Gaps = 35/228 (15%)

Query: 5   TGHQDNAEFALAMCPTEP-YVLSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSI-- 61
             H D    A+A        ++S  +DKS++LW +     +           G S  +  
Sbjct: 379 RAHTDMV-TAIATPIDNADIIVSASRDKSIILWKLTKDDKAYGVAQRRLT--GHSHFVED 435

Query: 62  IKQSPKPGDGN-------DK------AADGPSVGPRGIYNGHEDTVEDVTFCPSSAQEFC 108
           +  S    DG        D        A G S      + GH   V  V F   + Q   
Sbjct: 436 VVLSS---DGQFALSGSWDGELRLWDLAAGVSTRR---FVGHTKDVLSVAFSLDNRQ-IV 488

Query: 109 SVGDDSCLILWDARVGT-SPVIKVEKAHDADLHCVDWNP-LDDNLILTGSADNSVRMFDR 166
           S   D  + LW+        + +  + H   + CV ++P      I++ S D +V++++ 
Sbjct: 489 SASRDRTIKLWNTLGECKYTISEGGEGHRDWVSCVRFSPNTLQPTIVSASWDKTVKVWNL 548

Query: 167 RNLTSNGVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWD 214
            N          +   GH+  V  V  SPD  S+  S  +DG++ +WD
Sbjct: 549 SN------CKLRSTLAGHTGYVSTVAVSPD-GSLCASGGKDGVVLLWD 589

>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli} Length = 694

 Score = 52.4 bits (126), Expect = 8e-08
 Identities = 27/139 (19%), Positives = 52/139 (37%), Gaps = 20/139 (14%)

Query: 89  GHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLD 148
           GH   V  V   P       S G D  ++LWD   G    +   +A+   +H + ++P  
Sbjct: 559 GHTGYVSTVAVSPDG-SLCASGGKDGVVLLWDLAEGKK--LYSLEANSV-IHALCFSP-- 612

Query: 149 DNLILTGSADNSVRMFD-------------RRNLTSNGVGSPINKFEGHSAAVLCVQWSP 195
           +   L  + ++ ++++D              +        S     +        + WS 
Sbjct: 613 NRYWLCAATEHGIKIWDLESKSIVEDLKVDLKAEAEKADNSGPAATKRKVIYCTSLNWSA 672

Query: 196 DKSSVFGSSAEDGLLNIWD 214
           D S++F S   DG++ +W 
Sbjct: 673 DGSTLF-SGYTDGVIRVWG 690

>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli} Length = 694

 Score = 49.3 bits (118), Expect = 8e-07
 Identities = 28/193 (14%), Positives = 48/193 (24%), Gaps = 32/193 (16%)

Query: 89  GHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTS-PVIKVEKAHDADLHCVDWNPL 147
             +  +  V       +E       +   + +A+ G   P I    A    +     N  
Sbjct: 294 NKDKPLGAVALKSYE-EELAKDPRIA-ATMENAQKGEIMPNIPQMSAFWYAVRTAVINAA 351

Query: 148 DDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAED 207
                                  +            H+  V  +    D + +  S++ D
Sbjct: 352 SGRQT-------VDAALAAAQTNAAAGLVLKGTMRAHTDMVTAIATPIDNADIIVSASRD 404

Query: 208 GLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKV--VDFHWNASDPWTVVSVSDD 265
             + +W   K  K      R             GH   V  V      SD    +S S D
Sbjct: 405 KSIILWKLTKDDKAYGVAQRRLT----------GHSHFVEDVVLS---SDGQFALSGSWD 451

Query: 266 CDSTGGGGTLQIW 278
                    L++W
Sbjct: 452 G-------ELRLW 457

>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 Length = 393

 Score = 74.2 bits (183), Expect = 4e-15
 Identities = 47/304 (15%), Positives = 91/304 (29%), Gaps = 60/304 (19%)

Query: 4   LTGHQDNAEFALAMCPTEPYVLSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSI-- 61
              H         +      V    K ++   + + +       D    KS   +  +  
Sbjct: 11  RANHSKPI-PPFLLDLDSQSVPDALKKQTNDYYILYNPALPREIDVELHKSLDHTSVVCC 69

Query: 62  -----------------IK-------QSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDV 97
                             +               +  A   P           +  +  V
Sbjct: 70  VKFSNDGEYLATGCNKTTQVYRVSDGSLVARLSDDSAANKDPENLNTSSSPSSDLYIRSV 129

Query: 98  TFCPSSAQEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSA 157
            F P   +   +  +D  + +WD       ++ + + H+ D++ +D+ P   + +++GS 
Sbjct: 130 CFSPDG-KFLATGAEDRLIRIWDIENRK--IVMILQGHEQDIYSLDYFP-SGDKLVSGSG 185

Query: 158 DNSVRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEK 217
           D +VR++D R       G            V  V  SP       + + D  + +WD   
Sbjct: 186 DRTVRIWDLRT------GQCSLTLSIED-GVTTVAVSPGDGKYIAAGSLDRAVRVWD--- 235

Query: 218 VGKKVEQG-PRTTNYPAGLFFQHAGHRDKV--VDFHWNASDPWTVVSVSDDCDSTGGGGT 274
                E G                GH+D V  V F  +     +VVS S D        +
Sbjct: 236 ----SETGFLVERLDSENESGT--GHKDSVYSVVFTRDGQ---SVVSGSLD-------RS 279

Query: 275 LQIW 278
           +++W
Sbjct: 280 VKLW 283

>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 Length = 393

 Score = 59.9 bits (146), Expect = 2e-10
 Identities = 27/137 (19%), Positives = 53/137 (38%), Gaps = 13/137 (9%)

Query: 89  GHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGT-----SPVIKVEKAHDADLHCVD 143
             ED V  V   P   +   +   D  + +WD+  G          +    H   ++ V 
Sbjct: 204 SIEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVV 263

Query: 144 WNPLDDNLILTGSADNSVRMFD------RRNLTSNGVGSPINKFEGHSAAVLCVQWSPDK 197
           +   D   +++GS D SV++++      + +  +   G+    + GH   VL V  + + 
Sbjct: 264 FTR-DGQSVVSGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQN- 321

Query: 198 SSVFGSSAEDGLLNIWD 214
                S ++D  +  WD
Sbjct: 322 DEYILSGSKDRGVLFWD 338

>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 Length = 393

 Score = 42.2 bits (100), Expect = 1e-04
 Identities = 43/221 (19%), Positives = 74/221 (33%), Gaps = 86/221 (38%)

Query: 1   MEILTGHQDNAEFALAMCPTEPYVLSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGS 60
            E  TGH+D+  +++        V+SG  D+SV LW++Q+       +  +     +SG+
Sbjct: 249 NESGTGHKDSV-YSVVFTRDGQSVVSGSLDRSVKLWNLQNA------NNKSDSKTPNSGT 301

Query: 61  IIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQEFCSVGDDSCLILWD 120
                                     Y GH+D V  V                       
Sbjct: 302 CEV----------------------TYIGHKDFVLSVATTQ------------------- 320

Query: 121 ARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINK 180
                                      +D  IL+GS D  V  +D+++      G+P+  
Sbjct: 321 ---------------------------NDEYILSGSKDRGVLFWDKKS------GNPLLM 347

Query: 181 FEGHSAAVLCVQWSPDKS-----SVFGSSAEDGLLNIWDYE 216
            +GH  +V+ V  +   S     +VF + + D    IW Y+
Sbjct: 348 LQGHRNSVISVAVANGSSLGPEYNVFATGSGDCKARIWKYK 388

>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 Length = 393

 Score = 39.5 bits (93), Expect = 9e-04
 Identities = 16/110 (14%), Positives = 35/110 (31%), Gaps = 26/110 (23%)

Query: 177 PINKFEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYE--KVGKKVEQGPRTTNYPAG 234
           P N+   HS  +       D S     + +    + +      + ++++     +     
Sbjct: 7   PYNQRANHSKPIPPFLLDLD-SQSVPDALKKQTNDYYILYNPALPREIDVELHKSL---- 61

Query: 235 LFFQHAGHRDKV--VDFHWNASDPWTVVSVSDDCDSTGGGGTLQIWRMSD 282
                  H   V  V F    +D   + +  +         T Q++R+SD
Sbjct: 62  ------DHTSVVCCVKFS---NDGEYLATGCNK--------TTQVYRVSD 94

>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A Length = 337

 Score = 73.7 bits (182), Expect = 5e-15
 Identities = 22/193 (11%), Positives = 55/193 (28%), Gaps = 39/193 (20%)

Query: 89  GHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLD 148
             ++ +      P         G+ S L +WD    T  +     +     + +  +P D
Sbjct: 95  NRDNYIRSCKLLPDG-CTLIVGGEASTLSIWDLAAPTPRIKAELTSSAPACYALAISP-D 152

Query: 149 DNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWSPD-KSSVFGSSAED 207
             +  +  +D ++ ++D  N       + + +F+GH+    C+  S D      G    D
Sbjct: 153 SKVCFSCCSDGNIAVWDLHN------QTLVRQFQGHTDGASCIDISNDGTKLWTGG--LD 204

Query: 208 GLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKV--VDFHWNASDPWTVVSVSDD 265
             +  WD                              ++  + +         +    + 
Sbjct: 205 NTVRSWDLR------------EGRQLQQH----DFTSQIFSLGYCPTGE---WLAVGMES 245

Query: 266 CDSTGGGGTLQIW 278
                    +++ 
Sbjct: 246 -------SNVEVL 251

>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A Length = 337

 Score = 67.1 bits (165), Expect = 7e-13
 Identities = 45/287 (15%), Positives = 87/287 (30%), Gaps = 85/287 (29%)

Query: 1   MEILTGHQDNAEFALAMCPTEPYVLSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGS 60
              LT     A +ALA+ P      S   D ++ +W +                   + +
Sbjct: 134 KAELTSSAP-ACYALAISPDSKVCFSCCSDGNIAVWDLH------------------NQT 174

Query: 61  IIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQEFCSVGDDSCLILWD 120
           +++Q                      + GH D    +        +  + G D+ +  WD
Sbjct: 175 LVRQ----------------------FQGHTDGASCIDISNDG-TKLWTGGLDNTVRSWD 211

Query: 121 ARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINK 180
            R G       +    + +  + + P     +  G   ++V +                +
Sbjct: 212 LREGRQ---LQQHDFTSQIFSLGYCP-TGEWLAVGMESSNVEVLHVNK------PDKY-Q 260

Query: 181 FEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHA 240
              H + VL ++++      F S+ +D LLN W               T Y A +F    
Sbjct: 261 LHLHESCVLSLKFAYC-GKWFVSTGKDNLLNAWR--------------TPYGASIFQS-- 303

Query: 241 GHRDKV--VDFHWNASDPWTVVSVSDDCDSTGGGGTLQIWRMSDLIY 285
                V   D    + D   +V+ S D           ++   ++IY
Sbjct: 304 KESSSVLSCDI---SVDDKYIVTGSGD-------KKATVY---EVIY 337

>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A Length = 337

 Score = 54.0 bits (131), Expect = 1e-08
 Identities = 23/194 (11%), Positives = 46/194 (23%), Gaps = 36/194 (18%)

Query: 89  GHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLD 148
                            +      D+ +     R            H   +  V  +   
Sbjct: 7   MGSKPAYSFHVTADGQMQPVPFPPDALIGPGIPRHAR---QINTLNHGEVVCAVTISN-P 62

Query: 149 DNLILTGSADNSVRMFDRRNLTSNGVGSPI--NKFEGHSAAVLCVQWSPDKSSVFGSSAE 206
              + TG     V+++D   ++  G  SP+           +   +  PD         E
Sbjct: 63  TRHVYTGGKG-CVKVWD---ISHPGNKSPVSQLDCLNRDNYIRSCKLLPD-GCTLIVGGE 117

Query: 207 DGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKV--VDFHWNASDPWTVVSVSD 264
              L+IWD      +++              +          +     + D     S   
Sbjct: 118 ASTLSIWDLAAPTPRIKA-------------ELTSSAPACYALAI---SPDSKVCFSCCS 161

Query: 265 DCDSTGGGGTLQIW 278
           D       G + +W
Sbjct: 162 D-------GNIAVW 168

>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B* Length = 445

 Score = 74.2 bits (183), Expect = 5e-15
 Identities = 47/291 (16%), Positives = 96/291 (32%), Gaps = 74/291 (25%)

Query: 4   LTGHQDNAEFALAMCPTEPYVLSGGKDKSVVLWSIQ------------DHITSSATDPAT 51
           L GH     ++  M      ++SG  D+++ +W+ +              +         
Sbjct: 155 LVGHTGGV-WSSQMRDN--IIISGSTDRTLKVWNAETGECIHTLYGHTSTVRCMHLHEKR 211

Query: 52  AKSAGSSGSIIK----QSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQEF 107
             S GS  + ++    ++ +                  +  GH   V  V +     +  
Sbjct: 212 VVS-GSRDATLRVWDIETGQC---------------LHVLMGHVAAVRCVQYDG---RRV 252

Query: 108 CSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRR 167
            S   D  + +WD    T   +   + H   ++ + +   D   +++GS D S+R++D  
Sbjct: 253 VSGAYDFMVKVWDPETET--CLHTLQGHTNRVYSLQF---DGIHVVSGSLDTSIRVWDVE 307

Query: 168 NLTSNGVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPR 227
                  G+ I+   GH +    ++   +      S   D  + IWD +           
Sbjct: 308 T------GNCIHTLTGHQSLTSGMELKDNI---LVSGNADSTVKIWDIK----------- 347

Query: 228 TTNYPAGLFFQHAGHRDKVVDFHWNASDPWTVVSVSDDCDSTGGGGTLQIW 278
            T            H+  V        +   V++ SDD       GT+++W
Sbjct: 348 -TGQCLQTLQGPNKHQSAVTCL---QFNKNFVITSSDD-------GTVKLW 387

>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B* Length = 445

 Score = 61.9 bits (151), Expect = 6e-11
 Identities = 43/237 (18%), Positives = 79/237 (33%), Gaps = 52/237 (21%)

Query: 3   ILTGHQDNAEFALAMCPTEPYVLSGGKDKSVVLWSIQ------------DHITSSATDPA 50
           +L GH   A   +        V+SG  D  V +W  +            + + S   D  
Sbjct: 234 VLMGHVA-AVRCVQYDGR--RVVSGAYDFMVKVWDPETETCLHTLQGHTNRVYSLQFDGI 290

Query: 51  TAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQEFCSV 110
                  SGS         D + +  D  +        GH+     +           S 
Sbjct: 291 HV----VSGS--------LDTSIRVWDVETGNCIHTLTGHQSLTSGMEL---KDNILVSG 335

Query: 111 GDDSCLILWDARVGTS-PVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFD---- 165
             DS + +WD + G     ++    H + + C+ +N    N ++T S D +V+++D    
Sbjct: 336 NADSTVKIWDIKTGQCLQTLQGPNKHQSAVTCLQFNK---NFVITSSDDGTVKLWDLKTG 392

Query: 166 --RRNLTSNGVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAEDGLLN----IWDYE 216
              RNL +        +  G    V  ++ S  K       + +G       + D++
Sbjct: 393 EFIRNLVTL-------ESGGSGGVVWRIRASNTKLVCA-VGSRNGTEETKLLVLDFD 441

>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B* Length = 445

 Score = 60.8 bits (148), Expect = 1e-10
 Identities = 42/212 (19%), Positives = 65/212 (30%), Gaps = 43/212 (20%)

Query: 69  GDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPV 128
            D           G     +     V    F  S  +    +        W    G    
Sbjct: 54  EDNLLWREKCKEEGIDEPLHIKRRKVIKPGFIHSPWKS-AYIRQHRIDTNWRR--GELKS 110

Query: 129 IKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGHSAAV 188
            KV K HD  +          N I++GS DN+++++          G  +    GH+  V
Sbjct: 111 PKVLKGHDDHVITC-LQF-CGNRIVSGSDDNTLKVWSAVT------GKCLRTLVGHTGGV 162

Query: 189 LCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKV-- 246
              Q   +   + GS+  D  L +W+ E  G+ +                  GH   V  
Sbjct: 163 WSSQMRDNI-IISGST--DRTLKVWNAET-GECIHT------------LY--GHTSTVRC 204

Query: 247 VDFHWNASDPWTVVSVSDDCDSTGGGGTLQIW 278
           +  H        VVS S D        TL++W
Sbjct: 205 MHLH-----EKRVVSGSRDA-------TLRVW 224

>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B* Length = 464

 Score = 73.1 bits (180), Expect = 1e-14
 Identities = 44/278 (15%), Positives = 88/278 (31%), Gaps = 60/278 (21%)

Query: 3   ILTGHQDN-AEFALAMCPTEPYVLSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSI 61
           +  GH        +       Y+++G +D ++ +W +                     S 
Sbjct: 198 VFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLP------------------KESS 239

Query: 62  IKQSPKPGDGNDKAADGPSVGP-RGIYNGHEDTVEDVTFCPSSAQEFCSVGDDSCLILWD 120
           +    +  D               G+  GH  +V  V+          S   D+ LI+WD
Sbjct: 240 VPDHGEEHDYPLVFHTPEENPYFVGVLRGHMASVRTVSGH---GNIVVSGSYDNTLIVWD 296

Query: 121 ARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINK 180
                   + +   H   ++   ++  +    ++ S D ++R++D  N      G  +  
Sbjct: 297 VAQMKC--LYILSGHTDRIYSTIYDH-ERKRCISASMDTTIRIWDLEN------GELMYT 347

Query: 181 FEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHA 240
            +GH+A V  ++ S        S+A DG +  WD            R           H 
Sbjct: 348 LQGHTALVGLLRLSDKF---LVSAAADGSIRGWD-------ANDYSRKF-------SYHH 390

Query: 241 GHRDKVVDFHWNASDPWTVVSVSDDCDSTGGGGTLQIW 278
            +   +  F+        +VS S++           I+
Sbjct: 391 TNLSAITTFY---VSDNILVSGSEN--------QFNIY 417

>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B* Length = 464

 Score = 64.2 bits (157), Expect = 1e-11
 Identities = 34/196 (17%), Positives = 63/196 (32%), Gaps = 35/196 (17%)

Query: 87  YNGHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNP 146
            N                +    + +   L  W       P     + H   +       
Sbjct: 74  LNLKLSQKYPKLSQQDRLR-LSFLENIFILKNWYN-PKFVPQRTTLRGHMTSVITCLQF- 130

Query: 147 LDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAE 206
            +DN ++TG+ D  +R++D  N         + +  GH   V  ++++     V GS+  
Sbjct: 131 -EDNYVITGADDKMIRVYDSIN------KKFLLQLSGHDGGVWALKYAHGGILVSGST-- 181

Query: 207 DGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKVVDFHWNAS-DPWTVVSVSDD 265
           D  + +WD +K G                 F+  GH   V         +   +V+ S D
Sbjct: 182 DRTVRVWDIKK-GCCT----HV--------FE--GHNSTVRCLDIVEYKNIKYIVTGSRD 226

Query: 266 CDSTGGGGTLQIWRMS 281
                   TL +W++ 
Sbjct: 227 N-------TLHVWKLP 235

>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B* Length = 464

 Score = 55.3 bits (134), Expect = 7e-09
 Identities = 32/215 (14%), Positives = 64/215 (29%), Gaps = 58/215 (26%)

Query: 3   ILTGHQDNAEFALAMCPTEPYVLSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSII 62
           IL+GH D   ++          +S   D ++ +W ++                  +G ++
Sbjct: 305 ILSGHTDRI-YSTIYDHERKRCISASMDTTIRIWDLE------------------NGELM 345

Query: 63  KQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDAR 122
                                     GH   V  +     S +   S   D  +  WDA 
Sbjct: 346 Y----------------------TLQGHTALVGLLRL---SDKFLVSAAADGSIRGWDAN 380

Query: 123 VGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPI-NKF 181
             +    K    H        +    DN++++GS +N   +++ R+      G  +    
Sbjct: 381 DYSR---KFSYHHTNLSAITTFYV-SDNILVSGS-ENQFNIYNLRS------GKLVHANI 429

Query: 182 EGHSAAVLCVQWSPDKSSVFGSSAEDG-LLNIWDY 215
              +  +  V +      V     +    L I D+
Sbjct: 430 LKDADQIWSVNFKGKT-LVAAVEKDGQSFLEILDF 463

>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens} Length = 447

 Score = 72.9 bits (178), Expect = 1e-14
 Identities = 35/274 (12%), Positives = 80/274 (29%), Gaps = 31/274 (11%)

Query: 23  YVLSGGKDKSVVLWSIQDH-ITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSV 81
             L    DK++ LW I +        +           + +     P             
Sbjct: 109 QFLLSTNDKTIKLWKISERDKRPEGYNLKEEDGRYRDPTTVTTLRVPVFRPMDLMV--EA 166

Query: 82  GPRGIY-NGHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPVIKVE------KA 134
            PR I+ N H   +  ++      + + S  DD  + LW   +       V+      + 
Sbjct: 167 SPRRIFANAHTYHINSISINSDY-ETYLS-ADDLRINLWHLEITDRSFNIVDIKPANMEE 224

Query: 135 HDADLHCVDWNPLDDNLILTGSADNSVRMFDRRN----------LTSNGVGSPINKFEGH 184
               +   +++P   N  +  S+  ++R+ D R                  S  + F   
Sbjct: 225 LTEVITAAEFHPNSCNTFVYSSSKGTIRLCDMRASALCDRHSKLFEEPEDPSNRSFFSEI 284

Query: 185 SAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRD 244
            +++  V++S     +   + +   + +WD     + VE         + L   +     
Sbjct: 285 ISSISDVKFSHSGRYMM--TRDYLSVKVWDLNMENRPVETYQVHEYLRSKLCSLYENDCI 342

Query: 245 KVVDFHWNASDPWTVVSVSDDCDSTGGGGTLQIW 278
                         V++ S +          +++
Sbjct: 343 FDKFECCWNGSDSVVMTGSYN-------NFFRMF 369

>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens} Length = 447

 Score = 52.5 bits (125), Expect = 7e-08
 Identities = 45/247 (18%), Positives = 83/247 (33%), Gaps = 54/247 (21%)

Query: 14  ALAMCPTEPYVLSGGKDKSVVLWSIQ--------------------DHITSSATDPATAK 53
           ++++       LS   D  + LW ++                    + IT++   P +  
Sbjct: 182 SISINSDYETYLSAD-DLRINLWHLEITDRSFNIVDIKPANMEELTEVITAAEFHPNSCN 240

Query: 54  --SAGSSGSIIK----QSPKPGDGNDKAADGPSVG-PRGIYNGHEDTVEDVTFCPSSAQE 106
                SS   I+    ++    D + K  + P     R  ++    ++ DV F  S  + 
Sbjct: 241 TFVYSSSKGTIRLCDMRASALCDRHSKLFEEPEDPSNRSFFSEIISSISDVKFSHSG-RY 299

Query: 107 FCSVGDDSCLILWDARVGTSPVIKVEKAHD---------------ADLHCVDWNPLDDNL 151
             +  D   + +WD  +   PV +  + H+                D     WN   D++
Sbjct: 300 MMT-RDYLSVKVWDLNMENRPV-ETYQVHEYLRSKLCSLYENDCIFDKFECCWNG-SDSV 356

Query: 152 ILTGSADNSVRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAEDGL-L 210
           ++TGS +N  RMFDR           I                P K    G   +D + +
Sbjct: 357 VMTGSYNNFFRMFDRNT------KRDITLEASRENNKPRTVLKPRKVCASGKRKKDEISV 410

Query: 211 NIWDYEK 217
           +  D+ K
Sbjct: 411 DSLDFNK 417

>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens} Length = 447

 Score = 51.3 bits (122), Expect = 1e-07
 Identities = 35/268 (13%), Positives = 76/268 (28%), Gaps = 45/268 (16%)

Query: 14  ALAMCPTEPYVLSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGND 73
            +    +   + +G K   VV++  +           +      +     QS +P     
Sbjct: 33  TVEFNHSGELLATGDKGGRVVIFQQEQE-----NKIQSHSRGEYNVYSTFQSHEPEFDYL 87

Query: 74  KAADGPSVGPRGIYNGHEDTVEDVTFCPSS-AQEFCSVGDDSCLILWDARVGTSPVIKVE 132
           K+ +             E+ +  + + P   A +F    +D  + LW             
Sbjct: 88  KSLE------------IEEKINKIRWLPQKNAAQFLLSTNDKTIKLWKISERDKRPEGYN 135

Query: 133 KAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQ 192
              +   +          + +    D  V    RR                H+  +  + 
Sbjct: 136 LKEEDGRYRDPTTVTTLRVPVFRPMDLMVEASPRR-----------IFANAHTYHINSIS 184

Query: 193 WSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKVVDFHWN 252
            + D  +    SA+D  +N+W        +E   R+ N             + +    ++
Sbjct: 185 INSDYETYL--SADDLRINLWH-------LEITDRSFNIVDIKPANMEELTEVITAAEFH 235

Query: 253 ASDPWTVVSVSDDCDSTGGGGTLQIWRM 280
            +   T V  S         GT+++  M
Sbjct: 236 PNSCNTFVYSSSK-------GTIRLCDM 256

>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a Length = 340

 Score = 71.8 bits (177), Expect = 2e-14
 Identities = 59/279 (21%), Positives = 96/279 (34%), Gaps = 74/279 (26%)

Query: 4   LTGHQDNAEFALAMCPTEP-YVLSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSII 62
           L GH       +A  P  P  +LS  +DK++++W +    T+        +         
Sbjct: 34  LKGHNGWV-TQIATTPQFPDMILSASRDKTIIMWKLTRDETNYGIPQRALR--------- 83

Query: 63  KQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDAR 122
                                     GH   V DV       Q   S   D  L LWD  
Sbjct: 84  --------------------------GHSHFVSDVVISSDG-QFALSGSWDGTLRLWDLT 116

Query: 123 VGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFE 182
            GT+   +    H  D+  V ++  D+  I++GS D ++++++     + GV     + E
Sbjct: 117 TGTT--TRRFVGHTKDVLSVAFSS-DNRQIVSGSRDKTIKLWN-----TLGVCKYTVQDE 168

Query: 183 GHSAAVLCVQWSPD-KSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAG 241
            HS  V CV++SP+  + +  S   D L+ +W+       +      TN        H G
Sbjct: 169 SHSEWVSCVRFSPNSSNPIIVSCGWDKLVKVWN-------LANCKLKTN--------HIG 213

Query: 242 HRDKV--VDFHWNASDPWTVVSVSDDCDSTGGGGTLQIW 278
           H   +  V       D     S   D       G   +W
Sbjct: 214 HTGYLNTVTVS---PDGSLCASGGKD-------GQAMLW 242

>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a Length = 340

 Score = 62.5 bits (153), Expect = 3e-11
 Identities = 43/214 (20%), Positives = 69/214 (32%), Gaps = 51/214 (23%)

Query: 2   EILTGHQDNAEFALAMCPTEPYVLSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSI 61
             L GH       + +     + LSG  D ++ LW           D  T          
Sbjct: 80  RALRGHSHFV-SDVVISSDGQFALSGSWDGTLRLW-----------DLTTGT-------- 119

Query: 62  IKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDA 121
                                    + GH   V  V F   + Q   S   D  + LW+ 
Sbjct: 120 ---------------------TTRRFVGHTKDVLSVAFSSDNRQ-IVSGSRDKTIKLWNT 157

Query: 122 RVGTSPVIKVEKAHDADLHCVDWNPLDDNLIL-TGSADNSVRMFDRRNLTSNGVGSPINK 180
             G       +++H   + CV ++P   N I+ +   D  V++++  N            
Sbjct: 158 L-GVCKYTVQDESHSEWVSCVRFSPNSSNPIIVSCGWDKLVKVWNLAN------CKLKTN 210

Query: 181 FEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWD 214
             GH+  +  V  SPD  S+  S  +DG   +WD
Sbjct: 211 HIGHTGYLNTVTVSPD-GSLCASGGKDGQAMLWD 243

>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a Length = 340

 Score = 59.1 bits (144), Expect = 3e-10
 Identities = 22/133 (16%), Positives = 42/133 (31%), Gaps = 24/133 (18%)

Query: 148 DDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAED 207
             +   +G    +  ++ +         +     +GH+  V  +  +P    +  S++ D
Sbjct: 3   HHHHHSSGVDLGTENLYFQ--SMMTEQMTLRGTLKGHNGWVTQIATTPQFPDMILSASRD 60

Query: 208 GLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKV--VDFHWNASDPWTVVSVSDD 265
             + +W   +         R             GH   V  V      SD    +S S D
Sbjct: 61  KTIIMWKLTRDETNYGIPQRALR----------GHSHFVSDVVIS---SDGQFALSGSWD 107

Query: 266 CDSTGGGGTLQIW 278
                  GTL++W
Sbjct: 108 -------GTLRLW 113

>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a Length = 340

 Score = 58.7 bits (143), Expect = 5e-10
 Identities = 41/236 (17%), Positives = 79/236 (33%), Gaps = 46/236 (19%)

Query: 2   EILTGHQDNAEFALAMCPTEPYVLSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSI 61
               GH      ++A       ++SG +DK++ LW+             T +    S  +
Sbjct: 122 RRFVGHTK-DVLSVAFSSDNRQIVSGSRDKTIKLWNTL------GVCKYTVQDESHSEWV 174

Query: 62  --IKQSPKPGDG---------NDK------AADGPSVGPRGIYNGHEDTVEDVTFCPSSA 104
             ++ SP   +           DK       A+         + GH   +  VT  P   
Sbjct: 175 SCVRFSP---NSSNPIIVSCGWDKLVKVWNLANCKLKTN---HIGHTGYLNTVTVSPDG- 227

Query: 105 QEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMF 164
               S G D   +LWD   G    +      D  ++ + ++P  +   L  +   S++++
Sbjct: 228 SLCASGGKDGQAMLWDLNEGK--HLYTLDGGDI-INALCFSP--NRYWLCAATGPSIKIW 282

Query: 165 D------RRNLTSNGVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWD 214
           D         L    + +     +        + WS D  ++F +   D L+ +W 
Sbjct: 283 DLEGKIIVDELKQEVISTS---SKAEPPQCTSLAWSADGQTLF-AGYTDNLVRVWQ 334

>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a Length = 340

 Score = 55.2 bits (134), Expect = 7e-09
 Identities = 28/108 (25%), Positives = 43/108 (39%), Gaps = 4/108 (3%)

Query: 109 SVGDDSCLILWDARVGTS--PVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDR 166
           S  D     L+   + T    +    K H+  +  +   P   ++IL+ S D ++ M+  
Sbjct: 9   SGVDLGTENLYFQSMMTEQMTLRGTLKGHNGWVTQIATTPQFPDMILSASRDKTIIMWKL 68

Query: 167 RNLTSNGVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWD 214
               +N  G P     GHS  V  V  S D      S + DG L +WD
Sbjct: 69  TRDETN-YGIPQRALRGHSHFVSDVVISSD-GQFALSGSWDGTLRLWD 114

>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae} Length = 425

 Score = 71.1 bits (175), Expect = 5e-14
 Identities = 43/297 (14%), Positives = 90/297 (30%), Gaps = 57/297 (19%)

Query: 1   MEILTGHQDNAEFALAMCPTEPYVLSGGKDKSVVLWSIQD---------HITSSATDPAT 51
           + +L  H+     ++       +++S   +   +LW++             T  ++  A 
Sbjct: 142 LNVLNFHRAPI-VSVKWNKDGTHIISMDVENVTILWNVISGTVMQHFELKETGGSSINAE 200

Query: 52  AKSAGSSGSIIKQSPKPGD-----GNDK------AADGPSVGPRGIYNGHEDTVEDVTFC 100
             S G     +       D     G           +    G      GH   +  + F 
Sbjct: 201 NHS-GDGSLGVDVEWVDDDKFVIPGPKGAIFVYQITEKTPTGK---LIGHHGPISVLEFN 256

Query: 101 PSSAQEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNS 160
            ++ +   S  DD  L +W    G S        H   +    W    D+ +++ S D S
Sbjct: 257 DTN-KLLLSASDDGTLRIWHGGNGNS--QNCFYGHSQSIVSASWVG--DDKVISCSMDGS 311

Query: 161 VRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGK 220
           VR++  +        + +         +   + S D    +  +  DG +N++D +K   
Sbjct: 312 VRLWSLKQ------NTLLALSIVDGVPIFAGRISQD-GQKYAVAFMDGQVNVYDLKK-LN 363

Query: 221 KVEQGPRTTNYPAGLFFQHAGHRDKVVDFHWNASDPWTVVSVSDDC------DSTGG 271
              +                G+RD +++            S  +D       +  G 
Sbjct: 364 SKSRSLY-------------GNRDGILNPLPIPLYASYQSSQDNDYIFDLSWNCAGN 407

>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae} Length = 425

 Score = 65.8 bits (161), Expect = 2e-12
 Identities = 33/209 (15%), Positives = 65/209 (31%), Gaps = 38/209 (18%)

Query: 89  GHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPVIKVEKA-------------- 134
              D +   T+ P           +S   L           K  K               
Sbjct: 43  VKLDNIVSSTWNPLDESILAYGEKNSVARLARIVETDQEGKKYWKLTIIAELRHPFALSA 102

Query: 135 ----HDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGHSAAVLC 190
                   + C+ W+  D N I+TG  +  +R++++        G+ +N    H A ++ 
Sbjct: 103 SSGKTTNQVTCLAWSH-DGNSIVTGVENGELRLWNKT-------GALLNVLNFHRAPIVS 154

Query: 191 VQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFF-QHAGHRDKVVDF 249
           V+W+ D  +   S   + +  +W+    G  ++         + +    H+G     VD 
Sbjct: 155 VKWNKD-GTHIISMDVENVTILWNVIS-GTVMQHFELKETGGSSINAENHSGDGSLGVDV 212

Query: 250 HWNASDPWTVVSVSDDCDSTGGGGTLQIW 278
            W   D    V            G + ++
Sbjct: 213 EW--VDDDKFVIPGPK-------GAIFVY 232

>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae} Length = 425

 Score = 51.5 bits (124), Expect = 1e-07
 Identities = 23/119 (19%), Positives = 43/119 (36%), Gaps = 17/119 (14%)

Query: 111 GDDSCLI-LWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFD---- 165
            DD+  I   D   G   ++K E     ++    WNPLD++++  G  ++  R+      
Sbjct: 20  EDDTNSIDSSDDLDGFVKILK-EIVKLDNIVSSTWNPLDESILAYGEKNSVARLARIVET 78

Query: 166 ----------RRNLTSNGVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWD 214
                               +        +  V C+ WS D  +   +  E+G L +W+
Sbjct: 79  DQEGKKYWKLTIIAELRHPFALSASSGKTTNQVTCLAWSHD-GNSIVTGVENGELRLWN 136

>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R* Length = 319

 Score = 70.2 bits (173), Expect = 6e-14
 Identities = 50/283 (17%), Positives = 93/283 (32%), Gaps = 80/283 (28%)

Query: 4   LTGHQDNAEFALAMCPTEP-YVLSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSII 62
           L GH      +LA    +P  +LS  +DK+++ W +         D              
Sbjct: 13  LEGHNGWV-TSLATSAGQPNLLLSASRDKTLISWKLTG------DDQKFGV--------- 56

Query: 63  KQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDAR 122
                               P   + GH   V+D T          S   D  L LWD  
Sbjct: 57  --------------------PVRSFKGHSHIVQDCTLTADG-AYALSASWDKTLRLWDVA 95

Query: 123 VGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFE 182
            G +   +    H +D+  VD +    ++I++GS D +++++  +       G  +    
Sbjct: 96  TGET--YQRFVGHKSDVMSVDIDK-KASMIISGSRDKTIKVWTIK-------GQCLATLL 145

Query: 183 GHSAAVLCVQWSPDKSSVFG-----SSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFF 237
           GH+  V  V+  P++ +        S+  D ++  W+       + Q     +       
Sbjct: 146 GHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWN-------LNQFQIEAD------- 191

Query: 238 QHAGHRDKV--VDFHWNASDPWTVVSVSDDCDSTGGGGTLQIW 278
              GH   +  +     + D   + S   D       G + +W
Sbjct: 192 -FIGHNSNINTLTA---SPDGTLIASAGKD-------GEIMLW 223

>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R* Length = 319

 Score = 68.3 bits (168), Expect = 2e-13
 Identities = 39/211 (18%), Positives = 61/211 (28%), Gaps = 39/211 (18%)

Query: 76  ADGPSVGPRGIYNGHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVG---TSPVIKVE 132
           A    +  RG   GH   V  +           S   D  LI W            ++  
Sbjct: 2   ASNEVLVLRGTLEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSF 61

Query: 133 KAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQ 192
           K H   +        D    L+ S D ++R++D         G    +F GH + V+ V 
Sbjct: 62  KGHSHIVQDCTLTA-DGAYALSASWDKTLRLWDVAT------GETYQRFVGHKSDVMSVD 114

Query: 193 WSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKV--VDF- 249
                S +  S + D  + +W                           GH D V  V   
Sbjct: 115 IDKKASMII-SGSRDKTIKVWT-------------IKGQCLATL---LGHNDWVSQVRVV 157

Query: 250 --HWNASDPWTVVSVSDDCDSTGGGGTLQIW 278
                  D  T++S  +D         ++ W
Sbjct: 158 PNEKADDDSVTIISAGND-------KMVKAW 181

>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R* Length = 319

 Score = 61.4 bits (150), Expect = 5e-11
 Identities = 34/216 (15%), Positives = 64/216 (29%), Gaps = 57/216 (26%)

Query: 4   LTGHQDNAEFALAMCPTEPYVLSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIK 63
             GH         +     Y LS   DK++ LW +                   +G   +
Sbjct: 61  FKGHSHIV-QDCTLTADGAYALSASWDKTLRLWDVA------------------TGETYQ 101

Query: 64  QSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARV 123
                                  + GH+  V  V     +     S   D  + +W    
Sbjct: 102 ----------------------RFVGHKSDVMSVDIDKKA-SMIISGSRDKTIKVWTI-- 136

Query: 124 GTSPVIKVEKAHDADLHCVDWNP-----LDDNLILTGSADNSVRMFDRRNLTSNGVGSPI 178
                +     H+  +  V   P      D   I++   D  V+ ++             
Sbjct: 137 -KGQCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQ------FQIE 189

Query: 179 NKFEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWD 214
             F GH++ +  +  SPD  ++  S+ +DG + +W+
Sbjct: 190 ADFIGHNSNINTLTASPD-GTLIASAGKDGEIMLWN 224

>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R* Length = 319

 Score = 56.0 bits (136), Expect = 4e-09
 Identities = 35/236 (14%), Positives = 78/236 (33%), Gaps = 45/236 (19%)

Query: 2   EILTGHQDNAEFALAMCPTEPYVLSGGKDKSVVLWSI-----------QDHITSSATDPA 50
           +   GH+ +   ++ +      ++SG +DK++ +W+I            D ++     P 
Sbjct: 101 QRFVGHKSDV-MSVDIDKKASMIISGSRDKTIKVWTIKGQCLATLLGHNDWVSQVRVVPN 159

Query: 51  TAKSAGS----SGSIIKQSPKPGDGNDK------AADGPSVGPRGIYNGHEDTVEDVTFC 100
                 S    S             NDK                  + GH   +  +T  
Sbjct: 160 EKADDDSVTIISAG-----------NDKMVKAWNLNQFQIEAD---FIGHNSNINTLTAS 205

Query: 101 PSSAQEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNS 160
           P       S G D  ++LW+        +    A D ++  + ++P +   +   +    
Sbjct: 206 PDG-TLIASAGKDGEIMLWNLAAKK--AMYTLSAQD-EVFSLAFSP-NRYWLAAAT-ATG 259

Query: 161 VRMFDRRN--LTSNGVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWD 214
           +++F      L  +         +      + + WS D  ++F +   D ++ +W 
Sbjct: 260 IKVFSLDPQYLVDDLRPEFAGYSKAAEPHAVSLAWSADGQTLF-AGYTDNVIRVWQ 314

>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R* Length = 319

 Score = 41.3 bits (98), Expect = 2e-04
 Identities = 25/112 (22%), Positives = 40/112 (35%), Gaps = 22/112 (19%)

Query: 169 LTSNGVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRT 228
           + SN V       EGH+  V  +  S  + ++  S++ D  L  W      +K     R+
Sbjct: 1   MASNEVLVLRGTLEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRS 60

Query: 229 TNYPAGLFFQHAGHRDKV--VDFHWNASDPWTVVSVSDDCDSTGGGGTLQIW 278
                   F+  GH   V         +D    +S S D        TL++W
Sbjct: 61  --------FK--GHSHIVQDCTLT---ADGAYALSASWD-------KTLRLW 92

>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae} Length = 524

 Score = 71.1 bits (173), Expect = 6e-14
 Identities = 19/137 (13%), Positives = 45/137 (32%), Gaps = 10/137 (7%)

Query: 83  PRGIYNGHEDTVEDVTFCPSSAQE--FCSVGDDSCLILWDARVGTSPVIKVEKAHDADLH 140
           P      H+  +  V+   S  ++    +V  D    +++ +   +    V +   ++L 
Sbjct: 300 PSFYDQVHDSYILSVSTAYSDFEDTVVSTVAVDGYFYIFNPKDIATTKTTVSRFRGSNLV 359

Query: 141 CVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWSPDKSSV 200
            V + P      +     +S+R    R          ++        +  +  S     V
Sbjct: 360 PVVYCP-QIYSYIYSDGASSLRAVPSRA------AFAVHPLVSRETTITAIGVSRLHPMV 412

Query: 201 FGSSAEDGLLNIWDYEK 217
             + + DG L I +  +
Sbjct: 413 L-AGSADGSLIITNAAR 428

>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae} Length = 524

 Score = 57.2 bits (137), Expect = 2e-09
 Identities = 22/189 (11%), Positives = 50/189 (26%), Gaps = 36/189 (19%)

Query: 94  VEDVTFCPSSAQE-----FCSVGDDSCLILWDARVGTSPVIKVE---------KAHDADL 139
           V D+ +               V  +  +   +     + V   +            D+ +
Sbjct: 210 VWDLKWHEGCHAPHLVGCLSFVSQEGTINFLEIIDNATDVHVFKMCEKPSLTLSLADSLI 269

Query: 140 HCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGHSAAV--LCVQWSPDK 197
              D+       ++ G  +  V  FD  +        P    + H + +  +   +S  +
Sbjct: 270 TTFDFL--SPTTVVCGFKNGFVAEFDLTDPEV-----PSFYDQVHDSYILSVSTAYSDFE 322

Query: 198 SSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKVVDFHWNASDPW 257
            +V  + A DG   I++         +   TT                +V   +      
Sbjct: 323 DTVVSTVAVDGYFYIFNP--------KDIATT-----KTTVSRFRGSNLVPVVYCPQIYS 369

Query: 258 TVVSVSDDC 266
            + S     
Sbjct: 370 YIYSDGASS 378

>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 Length = 435

 Score = 70.0 bits (172), Expect = 1e-13
 Identities = 56/297 (18%), Positives = 100/297 (33%), Gaps = 71/297 (23%)

Query: 1   MEILTGHQDNAEFALAMCPTEPYVLSGGKDKSVVLWSIQ------------DHITSSATD 48
             ILTGH       L +   E  +++G  D +V +W +             + +     +
Sbjct: 166 KRILTGHTG---SVLCLQYDERVIITGSSDSTVRVWDVNTGEMLNTLIHHCEAVLHLRFN 222

Query: 49  PATAKSAGSSGSIIKQSPKPGDGNDK------AADGPSVGPRGIYNGHEDTVEDVTFCPS 102
                    + S            D+       A    +  R +  GH   V  V F   
Sbjct: 223 NGMM----VTCS-----------KDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDFDD- 266

Query: 103 SAQEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVR 162
             +   S   D  + +W+        ++    H   + C+      D L+++GS+DN++R
Sbjct: 267 --KYIVSASGDRTIKVWNTSTCE--FVRTLNGHKRGIACLQ---YRDRLVVSGSSDNTIR 319

Query: 163 MFDRRNLTSNGVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKV 222
           ++D         G+ +   EGH   V C+++   +     S A DG + +WD       +
Sbjct: 320 LWDIEC------GACLRVLEGHEELVRCIRFDNKR---IVSGAYDGKIKVWD-------L 363

Query: 223 EQGPRTTNYPAGLFFQH-AGHRDKVVDFHWNASDPWTVVSVSDDCDSTGGGGTLQIW 278
                       L  +    H  +V        D + +VS S D        T+ IW
Sbjct: 364 VAALDPRAPAGTLCLRTLVEHSGRVFRL---QFDEFQIVSSSHD-------DTILIW 410

>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 Length = 435

 Score = 63.9 bits (156), Expect = 1e-11
 Identities = 52/322 (16%), Positives = 104/322 (32%), Gaps = 81/322 (25%)

Query: 1   MEILTGHQDNAEFALAMCPTEPYVLSGGKDKSVVLWSIQ------------DHITSSATD 48
           ++ +    + ++    +   +  ++SG +D ++ +W                 +     D
Sbjct: 123 LQRIHCRSETSKGVYCLQYDDQKIVSGLRDNTIKIWDKNTLECKRILTGHTGSVLCLQYD 182

Query: 49  PATAKSAGSSGSIIKQSPKPGDGNDK------AADGPSVGPRGIYNGHEDTVEDVTFCPS 102
                + GSS              D          G  +        H + V  + F   
Sbjct: 183 ERVIIT-GSS--------------DSTVRVWDVNTGEMLNT---LIHHCEAVLHLRF--- 221

Query: 103 SAQEFCSVGDDSCLILWDARVGTSP-VIKVEKAHDADLHCVDWNPLDDNLILTGSADNSV 161
           +     +   D  + +WD    T   + +V   H A ++ VD+   DD  I++ S D ++
Sbjct: 222 NNGMMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDF---DDKYIVSASGDRTI 278

Query: 162 RMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKK 221
           ++++            +    GH   + C+Q       V  S + D  + +WD E  G  
Sbjct: 279 KVWNTST------CEFVRTLNGHKRGIACLQ--YRDRLVV-SGSSDNTIRLWDIEC-GAC 328

Query: 222 VEQGPRTTNYPAGLFFQHAGHRDKV--VDFHWNASDPWTVVSVSDDCDSTGGGGTLQIWR 279
           +    R       L     GH + V  + F     D   +VS + D       G +++W 
Sbjct: 329 L----RV------LE----GHEELVRCIRF-----DNKRIVSGAYD-------GKIKVWD 362

Query: 280 MSDLIYRPQDEVLAELEKFKAH 301
           +   +          L     H
Sbjct: 363 LVAALDPRAPAGTLCLRTLVEH 384

>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 Length = 435

 Score = 58.5 bits (142), Expect = 7e-10
 Identities = 36/217 (16%), Positives = 78/217 (35%), Gaps = 57/217 (26%)

Query: 1   MEILTGHQDNAEFALAMCPTEPYVLSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGS 60
             +L GH+  A   +       Y++S   D+++ +W+                   S+  
Sbjct: 249 RRVLVGHRA-AVNVVDFDDK--YIVSASGDRTIKVWNT------------------STCE 287

Query: 61  IIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQEFCSVGDDSCLILWD 120
            ++                        NGH+  +  + +     +   S   D+ + LWD
Sbjct: 288 FVR----------------------TLNGHKRGIACLQY---RDRLVVSGSSDNTIRLWD 322

Query: 121 ARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFD---RRNLTSNGVGSP 177
              G    ++V + H+  + C+     D+  I++G+ D  ++++D     +  +      
Sbjct: 323 IECGA--CLRVLEGHEELVRCIR---FDNKRIVSGAYDGKIKVWDLVAALDPRAPAGTLC 377

Query: 178 INKFEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWD 214
           +     HS  V  +Q+   +     SS+ D  + IWD
Sbjct: 378 LRTLVEHSGRVFRLQFDEFQ---IVSSSHDDTILIWD 411

>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae} Length = 343

 Score = 68.2 bits (166), Expect = 3e-13
 Identities = 23/249 (9%), Positives = 56/249 (22%), Gaps = 17/249 (6%)

Query: 23  YVLSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKP-----GDGNDKAAD 77
            +L       + +   + +      +  +A          + + +        G      
Sbjct: 96  RLLLLYPGNQITILDSKTNKVLREIEVDSANEIIYMYGHNEVNTEYFIWADNRGTIGFQS 155

Query: 78  GPSVGPRGIYNGHEDT-VEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPVIKVEKAHD 136
                   +++   D           S         D  L +++         +     +
Sbjct: 156 YEDDSQYIVHSAKSDVEYSSGVLHKDSLL-LALYSPDGILDVYNLSSPDQASSRFPVDEE 214

Query: 137 ADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWSPD 196
           A +  V +    +   +    D +V  FD R      +  P           +       
Sbjct: 215 AKIKEVKFAD--NGYWMVVECDQTVVCFDLRK-DVGTLAYPTYTIPEFKTGTVTYDIDDS 271

Query: 197 KSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKVVDFHWNASDP 256
             ++   S E   L I+ ++K  K   +                       D      D 
Sbjct: 272 GKNMIAYSNESNSLTIYKFDKKTKNWTK-------DEESALCLQSDTADFTDMDVVCGDG 324

Query: 257 WTVVSVSDD 265
                +  +
Sbjct: 325 GIAAILKTN 333

>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae} Length = 343

 Score = 47.4 bits (112), Expect = 2e-06
 Identities = 20/191 (10%), Positives = 55/191 (28%), Gaps = 17/191 (8%)

Query: 31  KSVVLWSIQDHITSSATDPA--TAKSAGSSGSIIKQSPKPGDGNDKAA---DGPSVGPRG 85
           K++ L   Q++  +  T P     KS      +     +  DG        D  ++    
Sbjct: 18  KNLELLQAQNYSRNIKTFPYKELNKSMYYDKWVCMCRCE--DGALHFTQLKDSKTITTIT 75

Query: 86  IYNGHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWN 145
             N                     +   + + + D++     + ++E     ++  +  +
Sbjct: 76  TPNPRTGGEHPAIISRGPCNRLLLLYPGNQITILDSKTNK-VLREIEVDSANEIIYMYGH 134

Query: 146 P-LDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGHS-AAVLCVQWSPDKSSVFGS 203
             ++    +      ++      +       S        S           D S +   
Sbjct: 135 NEVNTEYFIWADNRGTIGFQSYED------DSQYIVHSAKSDVEYSSGVLHKD-SLLLAL 187

Query: 204 SAEDGLLNIWD 214
            + DG+L++++
Sbjct: 188 YSPDGILDVYN 198

>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X Length = 397

 Score = 68.6 bits (168), Expect = 3e-13
 Identities = 38/326 (11%), Positives = 81/326 (24%), Gaps = 68/326 (20%)

Query: 3   ILTGHQDNAEFALAMCPTEPYVLSGGKDKSVVLWSIQ----------------------- 39
               H  +     ++     + +S   D  + +W  +                       
Sbjct: 11  AGKAHDADI---FSVSACNSFTVSCSGDGYLKVWDNKLLDNENPKDKSYSHFVHKSGLHH 67

Query: 40  ----DHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVE 95
                 I   A +     +   SG ++       D   K               H     
Sbjct: 68  VDVLQAIERDAFELCLVATTSFSGDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWAL 127

Query: 96  DVTFCPSSA--QEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADL-------------- 139
                          +        +W           +       L              
Sbjct: 128 KWGASNDRLLSHRLVATDVKGTTYIWKFHPFADESNSLTLNWSPTLELQGTVESPMTPSQ 187

Query: 140 --HCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWSPDK 197
               VD +     LI TG  + +V++ +   L         +    +S ++  V++SP  
Sbjct: 188 FATSVDISE--RGLIATGFNNGTVQISELSTLRPLYNFESQHSMINNSNSIRSVKFSPQ- 244

Query: 198 SSVFGSSAED---GLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKV--VDFHWN 252
            S+   + +    G + +++ E  G+++        + +        H   V  + F+  
Sbjct: 245 GSLLAIAHDSNSFGCITLYETEF-GERI-GSLSVPTHSSQASLGEFAHSSWVMSLSFN-- 300

Query: 253 ASDPWTVVSVSDDCDSTGGGGTLQIW 278
                T+ S   D       G L+ W
Sbjct: 301 -DSGETLCSAGWD-------GKLRFW 318

>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X Length = 397

 Score = 47.0 bits (112), Expect = 4e-06
 Identities = 19/143 (13%), Positives = 39/143 (27%), Gaps = 26/143 (18%)

Query: 89  GHEDTVEDVTFCPSSAQEFCSVGDD---SCLILWDARVG-----------TSPVIKVEKA 134
            + +++  V F P          D     C+ L++   G           +S     E A
Sbjct: 231 NNSNSIRSVKFSPQG-SLLAIAHDSNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFA 289

Query: 135 HDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGHSAAV----LC 190
           H + +  + +N      + +   D  +R +D +          I     H   +      
Sbjct: 290 HSSWVMSLSFND-SGETLCSAGWDGKLRFWDVKT------KERITTLNMHCDDIEIEEDI 342

Query: 191 VQWSPDKSSVFGSSAEDGLLNIW 213
           +       S+      D      
Sbjct: 343 LAVDEHGDSLAEPGVFDVKFLKK 365

>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A Length = 434

 Score = 64.9 bits (157), Expect = 6e-12
 Identities = 37/229 (16%), Positives = 67/229 (29%), Gaps = 31/229 (13%)

Query: 55  AGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQE------FC 108
           AG +  +     K     +K  D P+     +          +     S           
Sbjct: 53  AGGASGLQIFPTKNLLIQNKPGDDPNKIVDKVQGLLVPMKFPIHHLALSCDNLTLSACMM 112

Query: 109 SVGDDSCLILWDAR---------VGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADN 159
           S    S +  +D R                K+ K     +  + WNP   +++    AD 
Sbjct: 113 SSEYGSIIAFFDVRTFSNEAKQQKRPFAYHKLLKDAGGMVIDMKWNPTVPSMVAVCLADG 172

Query: 160 SVRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVG 219
           S+ +              +      + AV  V WSP    +     ++G +  +      
Sbjct: 173 SIAVLQVTE------TVKVCATLPSTVAVTSVCWSPKGKQLA-VGKQNGTVVQYLPTLQE 225

Query: 220 KKVEQGPRTTNYPAGLFFQHAGHRDKVVDFHWNASDPWTVVSVSDDCDS 268
           KKV   P          F  + H  +V+D  W  +  + +V  + D   
Sbjct: 226 KKVIPCP---------PFYESDHPVRVLDVLWIGTYVFAIVYAAADGTL 265

>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A Length = 434

 Score = 45.7 bits (107), Expect = 1e-05
 Identities = 18/178 (10%), Positives = 46/178 (25%), Gaps = 31/178 (17%)

Query: 135 HDADLHCVDWNPLDDNL---ILTGSADNSVRMFDRRNLTSNGVG-----SPINKFEGHSA 186
               +H +  +  +  L   +++    + +  FD R  ++         +     +    
Sbjct: 91  MKFPIHHLALSCDNLTLSACMMSSEYGSIIAFFDVRTFSNEAKQQKRPFAYHKLLKDAGG 150

Query: 187 AVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKV 246
            V+ ++W+P   S+      DG + +    +  K                         V
Sbjct: 151 MVIDMKWNPTVPSMVAVCLADGSIAVLQVTETVKVC---------------ATLPSTVAV 195

Query: 247 VDFHWNASDPWTVVSVSDDCDSTGGGGTLQIWRMSDLIYRPQDEVLAELEKFKAHVIS 304
               W+       V   +        GT+  +  +    +               V+ 
Sbjct: 196 TSVCWSPKGKQLAVGKQN--------GTVVQYLPTLQEKKVIPCPPFYESDHPVRVLD 245

>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae} Length = 902

 Score = 58.7 bits (141), Expect = 9e-10
 Identities = 34/305 (11%), Positives = 75/305 (24%), Gaps = 37/305 (12%)

Query: 6   GHQDNAEFALAMCPTEPYVLSGGKDKSVVLW---SIQDHITSSATDPATAKSAGSSGSII 62
           G       A A   T+  +        V ++    ++  I                  ++
Sbjct: 15  GMSSKPI-AAAFDFTQNLLAIATVTGEVHIYGQQQVEVVIKLEDRSAIKEMRFVKGIYLV 73

Query: 63  KQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDAR 122
             +              S             +  +    S          +  +I++D  
Sbjct: 74  VIN---AKDTVYVLSLYSQKVLTTV-FVPGKITSIDTDASL-DWMLIGLQNGSMIVYDID 128

Query: 123 VGTSPVIKVE---------KAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRN----- 168
                  K++          A  + +  + WNP D   +L    +     +         
Sbjct: 129 RDQLSSFKLDNLQKSSFFPAARLSPIVSIQWNPRDIGTVLISY-EYVTLTYSLVENEIKQ 187

Query: 169 -------LTSNGVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDY---EKV 218
                    + G        E  +  V+   + P+ S    +  ED  L  WD      +
Sbjct: 188 SFIYELPPFAPGGDFSEKTNEKRTPKVIQSLYHPN-SLHIITIHEDNSLVFWDANSGHMI 246

Query: 219 GKKVEQGPRTTNYPAGLFFQHAGHRDKVVDFHWNASDPW--TVVSVSDDCDSTGGGGTLQ 276
             +                  + +  K+   +W   +    T + +S    S G   +L 
Sbjct: 247 MARTVFETEINVPQPDYIRDSSTNAAKISKVYWMCENNPEYTSLLISHKSISRGDNQSLT 306

Query: 277 IWRMS 281
           +  + 
Sbjct: 307 MIDLG 311

>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae} Length = 902

 Score = 41.0 bits (95), Expect = 4e-04
 Identities = 24/214 (11%), Positives = 51/214 (23%), Gaps = 39/214 (18%)

Query: 3   ILTGHQDNAEFALAMCPTEPYVLSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSII 62
           +L G     +            ++G  + SV ++                    S G I 
Sbjct: 430 LLKGGV-RTKRQKLPAEYGTAFITGHSNGSVRIYDA------------------SHGDIQ 470

Query: 63  KQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDAR 122
             +    + +           R +    E  V+ ++F   +  E     +   ++L+   
Sbjct: 471 DNASFEVNLS-----------RTLNKAKELAVDKISFAAET-LELAVSIETGDVVLFKYE 518

Query: 123 VGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFE 182
           V     ++                L++           V + DR          P     
Sbjct: 519 VNQFYSVENRPESGDLEMNFRRFSLNNT------NGVLVDVRDRAPTGVRQGFMPSTAVH 572

Query: 183 GHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYE 216
            +      +  S             G L + D  
Sbjct: 573 ANKGKTSAINNSNIGFVGIAY--AAGSLMLIDRR 604

>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae} Length = 902

 Score = 40.6 bits (94), Expect = 5e-04
 Identities = 17/143 (11%), Positives = 42/143 (29%), Gaps = 24/143 (16%)

Query: 4   LTGHQDNAEFALAMCPTEPYVLSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIK 63
                     ++   P +   +    +   + +S+ ++                  S I 
Sbjct: 147 PAARLSPIV-SIQWNPRDIGTVLISYEYVTLTYSLVENEIKQ--------------SFIY 191

Query: 64  QSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARV 123
           + P    G D +                  V    + P+S     ++ +D+ L+ WDA  
Sbjct: 192 ELPPFAPGGDFSE--------KTNEKRTPKVIQSLYHPNS-LHIITIHEDNSLVFWDANS 242

Query: 124 GTSPVIKVEKAHDADLHCVDWNP 146
           G   + +     + ++   D+  
Sbjct: 243 GHMIMARTVFETEINVPQPDYIR 265

>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A Length = 355

 Score = 46.6 bits (110), Expect = 5e-06
 Identities = 19/195 (9%), Positives = 55/195 (28%), Gaps = 12/195 (6%)

Query: 36  WSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVE 95
             + +                   + ++ S      +        +G   +   H + ++
Sbjct: 140 GGVCEFSNGLLVYSNEFNLGQIHITKLQSSGSATTQDQGVQQKAILGKGVLIKAHTNPIK 199

Query: 96  DVTFCPSSAQEFCSVGDDSCLI-LWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILT 154
            V     S     +   D  +I ++    G            AD+  + W+  D + +  
Sbjct: 200 MVRLNRKS-DMVATCSQDGTIIRVFKTEDGVLVREFRRGLDRADVVDMKWST-DGSKLAV 257

Query: 155 GSADNSVRMFDRRNLTSNGVGSPINKF--EGHSAAVLCVQW------SPDKSSVFGSSAE 206
            S   ++ +F+  N   N   +       +   +      +            +    +E
Sbjct: 258 VSDKWTLHVFEIFNDQDNKRHALKGWINMKYFQSEWSLCNFKLSVDKHVRGCKI-AWISE 316

Query: 207 DGLLNIWDYEKVGKK 221
             L+ +W + ++ + 
Sbjct: 317 SSLVVVWPHTRMIET 331

>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A Length = 355

 Score = 40.0 bits (93), Expect = 6e-04
 Identities = 28/240 (11%), Positives = 58/240 (24%), Gaps = 64/240 (26%)

Query: 86  IYNGHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGT--------SPVIKV------ 131
           I +     +  V     +       G    + +WD             +PV  +      
Sbjct: 53  IMSQEMRHLSKVRMLHRTNYVAFVTGVKEVVHIWDDVKKQDVSRIKVDAPVKDLFLSREF 112

Query: 132 -------------------EKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSN 172
                                  D     V        +         + +   ++  S 
Sbjct: 113 IVVSYGDVISVFKFGNPWKRITDDIRFGGVCEFSNGLLVYSNEFNLGQIHITKLQSSGSA 172

Query: 173 GVGS----------PINKFEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKV 222
                              + H+  +  V+ +     V   S +  ++ ++  E  G  V
Sbjct: 173 TTQDQGVQQKAILGKGVLIKAHTNPIKMVRLNRKSDMVATCSQDGTIIRVFKTED-GVLV 231

Query: 223 EQGPRTTNYPAGLFFQHAGHRDKVVDFHWNASDPWTVVSVSDDCDSTGGGGTLQIWRMSD 282
            +            F+    R  VVD  W+      +  VSD         TL ++ + +
Sbjct: 232 RE------------FRRGLDRADVVDMKWSTDGSK-LAVVSDK-------WTLHVFEIFN 271

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 41.4 bits (96), Expect = 4e-04
 Identities = 35/262 (13%), Positives = 65/262 (24%), Gaps = 101/262 (38%)

Query: 123 VGTSP-VIKV--EKAHDADLHCVDWNPLDDNLI--LTGSADNSVRMFD----RRNLTSNG 173
           + T+P  + +  E   D       W+         LT   ++S+ + +    R+      
Sbjct: 323 LTTNPRRLSIIAESIRDGLAT---WDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLS 379

Query: 174 V---GSPINKFEGHSAAVLCVQWSPDKSSVFGSSAED----GLLNIWDYE---------- 216
           V    + I         +L + W     S             L+     E          
Sbjct: 380 VFPPSAHI------PTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYL 433

Query: 217 --------------------KVGKKVEQGPRTTNYPAGLFFQHAGH-------------- 242
                                + K  +       Y    F+ H GH              
Sbjct: 434 ELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLF 493

Query: 243 RDKVVDFHW------NASDPWTVVSVSDDCDSTGGGGTLQIWRMSDL-IYRPQ------- 288
           R   +DF +      + S  W       +        TLQ      L  Y+P        
Sbjct: 494 RMVFLDFRFLEQKIRHDSTAWNASGSILN--------TLQ-----QLKFYKPYICDNDPK 540

Query: 289 -DEVLAELEKF----KAHVISC 305
            + ++  +  F    + ++I  
Sbjct: 541 YERLVNAILDFLPKIEENLICS 562

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	309
2ynn_A	304	Coatomer subunit beta'; protein transport, peptide	100.0
1vyh_C	410	Platelet-activating factor acetylhydrolase IB alph	100.0
3ow8_A	321	WD repeat-containing protein 61; structural genomi	100.0
1got_B	340	GT-beta; complex (GTP-binding/transducer), G prote	100.0
4g56_B	357	MGC81050 protein; protein arginine methyltransfera	100.0
2pbi_B	354	Guanine nucleotide-binding protein subunit beta 5;	100.0
4gqb_B	344	Methylosome protein 50; TIM barrel, beta-propeller	100.0
4gqb_B	344	Methylosome protein 50; TIM barrel, beta-propeller	100.0
3iz6_a	380	40S ribosomal protein RACK1 (RACK1); eukaryotic ri	100.0
3fm0_A	345	Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD r	100.0
3ow8_A	321	WD repeat-containing protein 61; structural genomi	100.0
2pm7_B	297	Protein transport protein SEC13, protein transport	100.0
3frx_A	319	Guanine nucleotide-binding protein subunit beta- l	100.0
4ery_A	312	WD repeat-containing protein 5; WD40, WIN motif, b	100.0
1nr0_A	611	Actin interacting protein 1; beta propeller, WD40	100.0
1vyh_C	410	Platelet-activating factor acetylhydrolase IB alph	100.0
1erj_A	393	Transcriptional repressor TUP1; beta-propeller, tr	100.0
2xzm_R	343	RACK1; ribosome, translation; 3.93A {Tetrahymena t	100.0
1got_B	340	GT-beta; complex (GTP-binding/transducer), G prote	100.0
3bg1_A	316	Protein SEC13 homolog; NPC, transport, WD repeat,	100.0
2hes_X	330	YDR267CP; beta-propeller, WD40 repeat, biosyntheti	100.0
4g56_B	357	MGC81050 protein; protein arginine methyltransfera	100.0
2ymu_A	577	WD-40 repeat protein; unknown function, two domain	100.0
3iz6_a	380	40S ribosomal protein RACK1 (RACK1); eukaryotic ri	100.0
3fm0_A	345	Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD r	100.0
2hes_X	330	YDR267CP; beta-propeller, WD40 repeat, biosyntheti	100.0
4e54_B	435	DNA damage-binding protein 2; beta barrel, double	100.0
3frx_A	319	Guanine nucleotide-binding protein subunit beta- l	100.0
3dwl_C	377	Actin-related protein 2/3 complex subunit 1; prope	100.0
3jrp_A	379	Fusion protein of protein transport protein SEC13	100.0
2xzm_R	343	RACK1; ribosome, translation; 3.93A {Tetrahymena t	100.0
2pm7_B	297	Protein transport protein SEC13, protein transport	100.0
2pbi_B	354	Guanine nucleotide-binding protein subunit beta 5;	100.0
2aq5_A	402	Coronin-1A; WD40 repeat, 7-bladed beta-propeller,	100.0
4aow_A	340	Guanine nucleotide-binding protein subunit beta-2;	100.0
3dm0_A	694	Maltose-binding periplasmic protein fused with RAC	100.0
1sq9_A	397	Antiviral protein SKI8; WD repeat, beta-transducin	100.0
2ynn_A	304	Coatomer subunit beta'; protein transport, peptide	100.0
1k8k_C	372	P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-	100.0
2xyi_A	430	Probable histone-binding protein CAF1; transcripti	100.0
1nr0_A	611	Actin interacting protein 1; beta propeller, WD40	100.0
2j04_B	524	YDR362CP, TAU91; beta propeller, type 2 promoters,	100.0
2pm9_A	416	Protein WEB1, protein transport protein SEC31; bet	100.0
3f3f_A	351	Nucleoporin SEH1; structural protein, protein comp	100.0
3k26_A	366	Polycomb protein EED; WD40, structural genomics, N	100.0
3ei3_B	383	DNA damage-binding protein 2; UV-damage, DDB, nucl	100.0
1gxr_A	337	ESG1, transducin-like enhancer protein 1; transcri	100.0
2ymu_A	577	WD-40 repeat protein; unknown function, two domain	100.0
4ery_A	312	WD repeat-containing protein 5; WD40, WIN motif, b	100.0
4a11_B	408	DNA excision repair protein ERCC-8; DNA binding pr	100.0
3mkq_A	814	Coatomer beta'-subunit; beta-propeller, alpha-sole	100.0
2pm9_A	416	Protein WEB1, protein transport protein SEC31; bet	100.0
4gga_A	420	P55CDC, cell division cycle protein 20 homolog; ce	100.0
3vl1_A	420	26S proteasome regulatory subunit RPN14; beta-prop	100.0
3mmy_A	368	MRNA export factor; mRNA export, nuclear protein;	100.0
3odt_A	313	Protein DOA1; ubiquitin, nuclear protein; HET: MSE	100.0
4aez_A	401	CDC20, WD repeat-containing protein SLP1; cell cyc	100.0
3zwl_B	369	Eukaryotic translation initiation factor 3 subuni;	100.0
3i2n_A	357	WD repeat-containing protein 92; WD40 repeats, str	100.0
3bg1_A	316	Protein SEC13 homolog; NPC, transport, WD repeat,	100.0
1r5m_A	425	SIR4-interacting protein SIF2; transcription corep	100.0
1erj_A	393	Transcriptional repressor TUP1; beta-propeller, tr	100.0
3gre_A	437	Serine/threonine-protein kinase VPS15; seven-blade	100.0
3jro_A	753	Fusion protein of protein transport protein SEC13	100.0
4h5i_A	365	Guanine nucleotide-exchange factor SEC12; copii ve	100.0
3vl1_A	420	26S proteasome regulatory subunit RPN14; beta-prop	100.0
2xyi_A	430	Probable histone-binding protein CAF1; transcripti	100.0
4aow_A	340	Guanine nucleotide-binding protein subunit beta-2;	100.0
1r5m_A	425	SIR4-interacting protein SIF2; transcription corep	100.0
1k8k_C	372	P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-	100.0
1yfq_A	342	Cell cycle arrest protein BUB3; WD repeat WD40 rep	100.0
3dw8_B	447	Serine/threonine-protein phosphatase 2A 55 kDa RE	100.0
3i2n_A	357	WD repeat-containing protein 92; WD40 repeats, str	100.0
1sq9_A	397	Antiviral protein SKI8; WD repeat, beta-transducin	100.0
3dm0_A	694	Maltose-binding periplasmic protein fused with RAC	100.0
2j04_B	524	YDR362CP, TAU91; beta propeller, type 2 promoters,	100.0
4aez_A	401	CDC20, WD repeat-containing protein SLP1; cell cyc	100.0
3dwl_C	377	Actin-related protein 2/3 complex subunit 1; prope	100.0
3sfz_A	1249	APAF-1, apoptotic peptidase activating factor 1; a	100.0
3v7d_B	464	Cell division control protein 4; WD 40 domain, pho	100.0
3v7d_B	464	Cell division control protein 4; WD 40 domain, pho	100.0
4h5i_A	365	Guanine nucleotide-exchange factor SEC12; copii ve	100.0
3zwl_B	369	Eukaryotic translation initiation factor 3 subuni;	100.0
2oaj_A	902	Protein SNI1; WD40 repeat, beta propeller, endocyt	100.0
4ggc_A	318	P55CDC, cell division cycle protein 20 homolog; ce	100.0
1pgu_A	615	Actin interacting protein 1; WD repeat, seven-blad	100.0
4e54_B	435	DNA damage-binding protein 2; beta barrel, double	100.0
2ovr_B	445	FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40	100.0
1gxr_A	337	ESG1, transducin-like enhancer protein 1; transcri	100.0
3jrp_A	379	Fusion protein of protein transport protein SEC13	100.0
3f3f_A	351	Nucleoporin SEH1; structural protein, protein comp	100.0
2vdu_B	450	TRNA (guanine-N(7)-)-methyltransferase- associated	100.0
1p22_A	435	F-BOX/WD-repeat protein 1A; ubiquitination, degrad	100.0
2ovr_B	445	FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40	100.0
4gq1_A	393	NUP37; propeller, transport protein; 2.40A {Schizo	100.0
1p22_A	435	F-BOX/WD-repeat protein 1A; ubiquitination, degrad	100.0
2j04_A	588	TAU60, YPL007P, hypothetical protein YPL007C; beta	100.0
3odt_A	313	Protein DOA1; ubiquitin, nuclear protein; HET: MSE	100.0
3sfz_A	1249	APAF-1, apoptotic peptidase activating factor 1; a	100.0
3k26_A	366	Polycomb protein EED; WD40, structural genomics, N	100.0
3ei3_B	383	DNA damage-binding protein 2; UV-damage, DDB, nucl	100.0
2oaj_A	902	Protein SNI1; WD40 repeat, beta propeller, endocyt	100.0
3lrv_A	343	PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiqu	100.0
1pgu_A	615	Actin interacting protein 1; WD repeat, seven-blad	100.0
4gga_A	420	P55CDC, cell division cycle protein 20 homolog; ce	100.0
3vu4_A	355	KMHSV2; beta-propeller fold, protein transport; 2.	100.0
3gre_A	437	Serine/threonine-protein kinase VPS15; seven-blade	100.0
4a11_B	408	DNA excision repair protein ERCC-8; DNA binding pr	100.0
2aq5_A	402	Coronin-1A; WD40 repeat, 7-bladed beta-propeller,	100.0
2j04_A	588	TAU60, YPL007P, hypothetical protein YPL007C; beta	100.0
4ggc_A	318	P55CDC, cell division cycle protein 20 homolog; ce	100.0
3jro_A	753	Fusion protein of protein transport protein SEC13	100.0
4gq1_A	393	NUP37; propeller, transport protein; 2.40A {Schizo	100.0
2w18_A	356	PALB2, fancn, partner and localizer of BRCA2; fanc	100.0
2vdu_B	450	TRNA (guanine-N(7)-)-methyltransferase- associated	100.0
3mkq_A	814	Coatomer beta'-subunit; beta-propeller, alpha-sole	100.0
3dw8_B	447	Serine/threonine-protein phosphatase 2A 55 kDa RE	100.0
1yfq_A	342	Cell cycle arrest protein BUB3; WD repeat WD40 rep	99.97
3mmy_A	368	MRNA export factor; mRNA export, nuclear protein;	99.97
1l0q_A	391	Surface layer protein; SLP, S-layer, 7-bladed beta	99.97
3bws_A	433	Protein LP49; two-domain, immunoglobulin-like, 7-b	99.97
3lrv_A	343	PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiqu	99.97
2hqs_A	415	Protein TOLB; TOLB, PAL, TOL, transport protein-li	99.97
3bws_A	433	Protein LP49; two-domain, immunoglobulin-like, 7-b	99.96
1l0q_A	391	Surface layer protein; SLP, S-layer, 7-bladed beta	99.95
2w18_A	356	PALB2, fancn, partner and localizer of BRCA2; fanc	99.95
3vu4_A	355	KMHSV2; beta-propeller fold, protein transport; 2.	99.94
2hqs_A	415	Protein TOLB; TOLB, PAL, TOL, transport protein-li	99.94
2oit_A	434	Nucleoporin 214KDA; NH2 terminal domain of NUP214/	99.94
2oit_A	434	Nucleoporin 214KDA; NH2 terminal domain of NUP214/	99.94
2ojh_A	297	Uncharacterized protein ATU1656/AGR_C_3050; TOLB,	99.94
3vgz_A	353	Uncharacterized protein YNCE; beta-propeller, prot	99.93
1nir_A	543	Nitrite reductase; hemoprotein, denitrification, d	99.92
3u4y_A	331	Uncharacterized protein; structural genomics, PSI-	99.92
1ri6_A	343	Putative isomerase YBHE; 7-bladed propeller, enzym	99.92
2ecf_A	741	Dipeptidyl peptidase IV; prolyl oligopeptidase fam	99.91
3u4y_A	331	Uncharacterized protein; structural genomics, PSI-	99.9
3hfq_A	347	Uncharacterized protein LP_2219; Q88V64_lacpl, NES	99.9
2ojh_A	297	Uncharacterized protein ATU1656/AGR_C_3050; TOLB,	99.9
3o4h_A	582	Acylamino-acid-releasing enzyme; alpha/beta hydrol	99.9
1xfd_A	723	DIP, dipeptidyl aminopeptidase-like protein 6, dip	99.89
3scy_A	361	Hypothetical bacterial 6-phosphogluconolactonase;	99.89
1nir_A	543	Nitrite reductase; hemoprotein, denitrification, d	99.89
3hfq_A	347	Uncharacterized protein LP_2219; Q88V64_lacpl, NES	99.89
2z3z_A	706	Dipeptidyl aminopeptidase IV; peptidase family S9,	99.88
2ecf_A	741	Dipeptidyl peptidase IV; prolyl oligopeptidase fam	99.88
1xfd_A	723	DIP, dipeptidyl aminopeptidase-like protein 6, dip	99.88
1ri6_A	343	Putative isomerase YBHE; 7-bladed propeller, enzym	99.87
1k32_A	1045	Tricorn protease; protein degradation, substrate g	99.87
3vgz_A	353	Uncharacterized protein YNCE; beta-propeller, prot	99.86
1jmx_B	349	Amine dehydrogenase; oxidoreductase; HET: TRQ HEC;	99.86
2z3z_A	706	Dipeptidyl aminopeptidase IV; peptidase family S9,	99.86
1k32_A	1045	Tricorn protease; protein degradation, substrate g	99.85
1pby_B	337	Quinohemoprotein amine dehydrogenase 40 kDa subuni	99.85
1jof_A	365	Carboxy-CIS,CIS-muconate cyclase; beta-propeller,	99.84
1z68_A	719	Fibroblast activation protein, alpha subunit; sepr	99.83
3fvz_A	329	Peptidyl-glycine alpha-amidating monooxygenase; be	99.81
1z68_A	719	Fibroblast activation protein, alpha subunit; sepr	99.81
4a5s_A	740	Dipeptidyl peptidase 4 soluble form; hydrolase, ty	99.8
3o4h_A	582	Acylamino-acid-releasing enzyme; alpha/beta hydrol	99.79
1q7f_A	286	NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL	99.78
3pe7_A	388	Oligogalacturonate lyase; seven-bladed beta-propel	99.77
3azo_A	662	Aminopeptidase; POP family, hydrolase; 2.00A {Stre	99.76
1pby_B	337	Quinohemoprotein amine dehydrogenase 40 kDa subuni	99.76
3pe7_A	388	Oligogalacturonate lyase; seven-bladed beta-propel	99.75
3fvz_A	329	Peptidyl-glycine alpha-amidating monooxygenase; be	99.75
2dg1_A	333	DRP35, lactonase; beta propeller, hydrolase; 1.72A	99.75
2xdw_A	710	Prolyl endopeptidase; alpha/beta-hydrolase, amnesi	99.74
2oiz_A	361	Aromatic amine dehydrogenase, large subunit; oxido	99.73
3scy_A	361	Hypothetical bacterial 6-phosphogluconolactonase;	99.73
3e5z_A	296	Putative gluconolactonase; X-RAY NESG Q9RXN3 gluco	99.73
1rwi_B	270	Serine/threonine-protein kinase PKND; beta propell	99.72
2bkl_A	695	Prolyl endopeptidase; mechanistic study, celiac sp	99.7
4a5s_A	740	Dipeptidyl peptidase 4 soluble form; hydrolase, ty	99.69
1jmx_B	349	Amine dehydrogenase; oxidoreductase; HET: TRQ HEC;	99.69
3azo_A	662	Aminopeptidase; POP family, hydrolase; 2.00A {Stre	99.69
2gop_A	347	Trilobed protease; beta propeller, open velcro, hy	99.68
1jof_A	365	Carboxy-CIS,CIS-muconate cyclase; beta-propeller,	99.68
1xip_A	388	Nucleoporin NUP159; beta-propeller, transport prot	99.66
3c5m_A	396	Oligogalacturonate lyase; blade-shaped beta-propel	99.66
3c5m_A	396	Oligogalacturonate lyase; blade-shaped beta-propel	99.64
2dg1_A	333	DRP35, lactonase; beta propeller, hydrolase; 1.72A	99.63
3e5z_A	296	Putative gluconolactonase; X-RAY NESG Q9RXN3 gluco	99.62
2z2n_A	299	Virginiamycin B lyase; seven-bladed beta-propeller	99.59
3g4e_A	297	Regucalcin; six bladed beta-propeller, gluconolcat	99.59
1pjx_A	314	Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotries	99.59
3no2_A	276	Uncharacterized protein; six-bladed beta-propeller	99.59
2oiz_A	361	Aromatic amine dehydrogenase, large subunit; oxido	99.55
3dsm_A	328	Uncharacterized protein bacuni_02894; seven_blated	99.54
2xdw_A	710	Prolyl endopeptidase; alpha/beta-hydrolase, amnesi	99.54
1qks_A	567	Cytochrome CD1 nitrite reductase; enzyme, oxidored	99.53
1q7f_A	286	NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL	99.53
1qks_A	567	Cytochrome CD1 nitrite reductase; enzyme, oxidored	99.53
1yr2_A	741	Prolyl oligopeptidase; prolyl endopeptidase, mecha	99.53
1xip_A	388	Nucleoporin NUP159; beta-propeller, transport prot	99.52
1pjx_A	314	Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotries	99.51
3hrp_A	409	Uncharacterized protein; NP_812590.1, structural g	99.51
3dsm_A	328	Uncharacterized protein bacuni_02894; seven_blated	99.5
3iuj_A	693	Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas	99.49
2gop_A	347	Trilobed protease; beta propeller, open velcro, hy	99.48
1rwi_B	270	Serine/threonine-protein kinase PKND; beta propell	99.47
2ghs_A	326	AGR_C_1268P; regucalcin, structural genomics, join	99.47
2qc5_A	300	Streptogramin B lactonase; beta propeller, lyase;	99.47
2bkl_A	695	Prolyl endopeptidase; mechanistic study, celiac sp	99.47
2z2n_A	299	Virginiamycin B lyase; seven-bladed beta-propeller	99.46
3no2_A	276	Uncharacterized protein; six-bladed beta-propeller	99.42
3dr2_A	305	Exported gluconolactonase; gluconolactonase SMP-30	99.41
2mad_H	373	Methylamine dehydrogenase (heavy subunit); oxidore	99.39
3g4e_A	297	Regucalcin; six bladed beta-propeller, gluconolcat	99.38
2qc5_A	300	Streptogramin B lactonase; beta propeller, lyase;	99.35
2qe8_A	343	Uncharacterized protein; structural genomics, join	99.34
2iwa_A	266	Glutamine cyclotransferase; pyroglutamate, acyltra	99.3
1yr2_A	741	Prolyl oligopeptidase; prolyl endopeptidase, mecha	99.29
3sjl_D	386	Methylamine dehydrogenase heavy chain; MAUG, C-hem	99.27
2ghs_A	326	AGR_C_1268P; regucalcin, structural genomics, join	99.26
1npe_A	267	Nidogen, entactin; glycoprotein, basement membrane	99.25
3c75_H	426	MADH, methylamine dehydrogenase heavy chain; coppe	99.22
3dr2_A	305	Exported gluconolactonase; gluconolactonase SMP-30	99.22
2mad_H	373	Methylamine dehydrogenase (heavy subunit); oxidore	99.21
2qe8_A	343	Uncharacterized protein; structural genomics, join	99.2
2hz6_A	369	Endoplasmic reticulum to nucleus signalling 1 isof	99.19
3hrp_A	409	Uncharacterized protein; NP_812590.1, structural g	99.18
3nol_A	262	Glutamine cyclotransferase; beta-propeller, glutam	99.17
2ece_A	462	462AA long hypothetical selenium-binding protein;	99.14
1npe_A	267	Nidogen, entactin; glycoprotein, basement membrane	99.11
1mda_H	368	Methylamine dehydrogenase (heavy subunit); electro	99.11
3nok_A	268	Glutaminyl cyclase; beta-propeller, cyclotransfera	99.1
3iuj_A	693	Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas	99.09
2ece_A	462	462AA long hypothetical selenium-binding protein;	99.07
3mbr_X	243	Glutamine cyclotransferase; beta-propeller; 1.44A	99.05
3c75_H	426	MADH, methylamine dehydrogenase heavy chain; coppe	99.02
3sjl_D	386	Methylamine dehydrogenase heavy chain; MAUG, C-hem	99.0
1kb0_A	677	Quinohemoprotein alcohol dehydrogenase; beta-prope	98.96
1yiq_A	689	Quinohemoprotein alcohol dehydrogenase; electron t	98.94
3v64_C	349	Agrin; beta propeller, laminin-G, signaling, prote	98.93
3v65_B	386	Low-density lipoprotein receptor-related protein;	98.91
2p4o_A	306	Hypothetical protein; putative lactonase, structur	98.9
1ijq_A	316	LDL receptor, low-density lipoprotein receptor; be	98.88
3v64_C	349	Agrin; beta propeller, laminin-G, signaling, prote	98.86
3p5b_L	400	Low density lipoprotein receptor variant; B-propel	98.85
3v65_B	386	Low-density lipoprotein receptor-related protein;	98.84
1fwx_A	595	Nitrous oxide reductase; beta-propeller domain, cu	98.82
1mda_H	368	Methylamine dehydrogenase (heavy subunit); electro	98.8
3sov_A	318	LRP-6, low-density lipoprotein receptor-related pr	98.75
3hxj_A	330	Pyrrolo-quinoline quinone; all beta protein. incom	98.74
3hxj_A	330	Pyrrolo-quinoline quinone; all beta protein. incom	98.73
1ijq_A	316	LDL receptor, low-density lipoprotein receptor; be	98.73
2xe4_A	751	Oligopeptidase B; hydrolase-inhibitor complex, hyd	98.71
2hz6_A	369	Endoplasmic reticulum to nucleus signalling 1 isof	98.71
2iwa_A	266	Glutamine cyclotransferase; pyroglutamate, acyltra	98.71
2fp8_A	322	Strictosidine synthase; six bladed beta propeller	98.69
1yiq_A	689	Quinohemoprotein alcohol dehydrogenase; electron t	98.68
3nol_A	262	Glutamine cyclotransferase; beta-propeller, glutam	98.68
1kb0_A	677	Quinohemoprotein alcohol dehydrogenase; beta-prope	98.68
1fwx_A	595	Nitrous oxide reductase; beta-propeller domain, cu	98.67
3m0c_C	791	LDL receptor, low-density lipoprotein receptor; pr	98.65
3q7m_A	376	Lipoprotein YFGL, BAMB; beta-propeller, BAM comple	98.63
1kv9_A	668	Type II quinohemoprotein alcohol dehydrogenase; el	98.63
3nok_A	268	Glutaminyl cyclase; beta-propeller, cyclotransfera	98.6
3q7m_A	376	Lipoprotein YFGL, BAMB; beta-propeller, BAM comple	98.6
1n7d_A	699	LDL receptor, low-density lipoprotein receptor; fa	98.57
3p5b_L	400	Low density lipoprotein receptor variant; B-propel	98.56
3mbr_X	243	Glutamine cyclotransferase; beta-propeller; 1.44A	98.56
3sov_A	318	LRP-6, low-density lipoprotein receptor-related pr	98.5
3qqz_A	255	Putative uncharacterized protein YJIK; MCSG, PSI-2	98.43
3qqz_A	255	Putative uncharacterized protein YJIK; MCSG, PSI-2	98.37
3m0c_C	791	LDL receptor, low-density lipoprotein receptor; pr	98.35
3s94_A	619	LRP-6, low-density lipoprotein receptor-related pr	98.35
4a0p_A	628	LRP6, LRP-6, low-density lipoprotein receptor-rela	98.35
3tc9_A	430	Hypothetical hydrolase; 6-bladed beta-propeller, i	98.32
3tc9_A	430	Hypothetical hydrolase; 6-bladed beta-propeller, i	98.31
2ad6_A	571	Methanol dehydrogenase subunit 1; PQQ configuratio	98.28
2p9w_A	334	MAL S 1 allergenic protein; beta propeller; 1.35A	98.28
1n7d_A	699	LDL receptor, low-density lipoprotein receptor; fa	98.26
3amr_A	355	3-phytase; beta-propeller, phytate, MYO-inositol h	98.25
2p9w_A	334	MAL S 1 allergenic protein; beta propeller; 1.35A	98.23
2fp8_A	322	Strictosidine synthase; six bladed beta propeller	98.19
1w6s_A	599	Methanol dehydrogenase subunit 1; anisotropic, ele	98.16
4a2l_A	795	BT_4663, two-component system sensor histidine kin	98.12
2p4o_A	306	Hypothetical protein; putative lactonase, structur	98.12
4a0p_A	628	LRP6, LRP-6, low-density lipoprotein receptor-rela	98.1
1flg_A	582	Protein (quinoprotein ethanol dehydrogenase); supe	98.09
1kv9_A	668	Type II quinohemoprotein alcohol dehydrogenase; el	98.08
3kya_A	496	Putative phosphatase; structural genomics, joint c	98.04
2xe4_A	751	Oligopeptidase B; hydrolase-inhibitor complex, hyd	98.03
2ad6_A	571	Methanol dehydrogenase subunit 1; PQQ configuratio	98.02
4hw6_A	433	Hypothetical protein, IPT/TIG domain protein; puta	98.01
1flg_A	582	Protein (quinoprotein ethanol dehydrogenase); supe	97.97
4a2l_A	795	BT_4663, two-component system sensor histidine kin	97.96
4hw6_A	433	Hypothetical protein, IPT/TIG domain protein; puta	97.95
1k3i_A	656	Galactose oxidase precursor; blade beta propeller,	97.85
3kya_A	496	Putative phosphatase; structural genomics, joint c	97.82
3s94_A	619	LRP-6, low-density lipoprotein receptor-related pr	97.76
1w6s_A	599	Methanol dehydrogenase subunit 1; anisotropic, ele	97.73
3v9f_A	781	Two-component system sensor histidine kinase/RESP	97.71
3sre_A	355	PON1, serum paraoxonase; directed evolution, 6-bla	97.63
3amr_A	355	3-phytase; beta-propeller, phytate, MYO-inositol h	97.61
1k3i_A	656	Galactose oxidase precursor; blade beta propeller,	97.58
3sre_A	355	PON1, serum paraoxonase; directed evolution, 6-bla	97.56
2xn4_A	302	Kelch-like protein 2; structural protein, cytoskel	97.46
3v9f_A	781	Two-component system sensor histidine kinase/RESP	97.46
3ii7_A	306	Kelch-like protein 7; protein-binding, kelch-repea	97.41
1zgk_A	308	Kelch-like ECH-associated protein 1; beta-propelle	97.35
2xzh_A	365	Clathrin heavy chain 1; endocytosis, endocytosis i	97.34
2xbg_A	327	YCF48-like protein; photosynthesis, photosystem II	97.32
2vpj_A	301	Kelch-like protein 12; adaptor protein, WNT signal	97.24
2ism_A	352	Putative oxidoreductase; BL41XU spring-8, bladed b	97.13
3pbp_A	452	Nucleoporin NUP82; beta-propeller, mRNA export, mR	96.91
2vpj_A	301	Kelch-like protein 12; adaptor protein, WNT signal	96.83
1bpo_A	494	Protein (clathrin); clathrin endocytosis beta-prop	96.81
2xn4_A	302	Kelch-like protein 2; structural protein, cytoskel	96.78
3pbp_A	452	Nucleoporin NUP82; beta-propeller, mRNA export, mR	96.75
1zgk_A	308	Kelch-like ECH-associated protein 1; beta-propelle	96.68
1tl2_A	236	L10, protein (tachylectin-2); animal lectin, horse	96.6
3ii7_A	306	Kelch-like protein 7; protein-binding, kelch-repea	96.56
2xzh_A	365	Clathrin heavy chain 1; endocytosis, endocytosis i	96.52
3a9g_A	354	Putative uncharacterized protein; PQQ dependent de	96.47
2ism_A	352	Putative oxidoreductase; BL41XU spring-8, bladed b	96.44
1xi4_A	1630	Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle	96.34
2g8s_A	353	Glucose/sorbosone dehydrogenases; bladed beta-prop	96.22
2uvk_A	357	YJHT; unknown function, hypothetical protein, sial	96.19
1tl2_A	236	L10, protein (tachylectin-2); animal lectin, horse	96.12
1cru_A	454	Protein (soluble quinoprotein glucose dehydrogena;	96.06
2xbg_A	327	YCF48-like protein; photosynthesis, photosystem II	96.01
3a9g_A	354	Putative uncharacterized protein; PQQ dependent de	95.8
4asc_A	315	Kelch repeat and BTB domain-containing protein 5;	95.58
4asc_A	315	Kelch repeat and BTB domain-containing protein 5;	95.51
2woz_A	318	Kelch repeat and BTB domain-containing protein 10;	95.4
2zwa_A	695	Leucine carboxyl methyltransferase 2; HET: SAH CIT	95.38
3das_A	347	Putative oxidoreductase; aldose sugar dehydrogenas	95.34
2g8s_A	353	Glucose/sorbosone dehydrogenases; bladed beta-prop	95.19
1cru_A	454	Protein (soluble quinoprotein glucose dehydrogena;	95.14
3ei3_A	1158	DNA damage-binding protein 1; UV-damage, DDB, nucl	94.67
3das_A	347	Putative oxidoreductase; aldose sugar dehydrogenas	94.45
2woz_A	318	Kelch repeat and BTB domain-containing protein 10;	94.06
1xi4_A	1630	Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle	93.67
2zwa_A	695	Leucine carboxyl methyltransferase 2; HET: SAH CIT	93.64
3ei3_A	1158	DNA damage-binding protein 1; UV-damage, DDB, nucl	93.37
3s25_A	302	Hypothetical 7-bladed beta-propeller-like protein;	93.31
3sbq_A	638	Nitrous-oxide reductase; beta-propeller, cupredoxi	92.29
3sbq_A	638	Nitrous-oxide reductase; beta-propeller, cupredoxi	90.89
2wg3_C	463	Hedgehog-interacting protein; lipoprotein, develop	89.87
3b7f_A	394	Glycosyl hydrolase, BNR repeat; 7-bladed beta-prop	88.04
3b7f_A	394	Glycosyl hydrolase, BNR repeat; 7-bladed beta-prop	86.94
2wg3_C	463	Hedgehog-interacting protein; lipoprotein, develop	85.69
1bpo_A	494	Protein (clathrin); clathrin endocytosis beta-prop	85.47
4gq2_M	950	Nucleoporin NUP120; beta propeller alpha helical,	85.16
2uvk_A	357	YJHT; unknown function, hypothetical protein, sial	84.26
3no0_A	276	DNA gyrase subunit A; DNA topology, topoisomerase,	83.98
2be1_A	339	Serine/threonine-protein kinase/endoribonuclease;	80.83
3s25_A	302	Hypothetical 7-bladed beta-propeller-like protein;	80.66

>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A

Probab=100.00  E-value=1.4e-46  Score=297.17  Aligned_cols=267  Identities=21%  Similarity=0.308  Sum_probs=219.3

Q ss_pred             cccCCCCCcceEEEEECCCCCEEEEecCCCcEEEEeCCccccccccCC----ccccccCCCCceeecCCCCCCCCcccCC
Q 021657            2 EILTGHQDNAEFALAMCPTEPYVLSGGKDKSVVLWSIQDHITSSATDP----ATAKSAGSSGSIIKQSPKPGDGNDKAAD   77 (309)
Q Consensus         2 ~~l~~H~~~~V~~~~~~~~~~~l~t~~~dg~i~vwd~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~   77 (309)
                      ++|++|.+ .|++++|+|++++|++|+.||+|++||++++........    .........  ...+..+..++.+++|+
T Consensus         7 ~~~~~h~~-~V~~~~fsp~~~~l~s~~~dg~v~lWd~~~~~~~~~~~~~~~~v~~~~~~~~--~~~l~s~s~d~~i~vwd   83 (304)
T 2ynn_A            7 KTFSNRSD-RVKGIDFHPTEPWVLTTLYSGRVELWNYETQVEVRSIQVTETPVRAGKFIAR--KNWIIVGSDDFRIRVFN   83 (304)
T ss_dssp             EEEEEECS-CEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEEEGG--GTEEEEEETTSEEEEEE
T ss_pred             EeecCCCC-ceEEEEECCCCCEEEEEcCCCcEEEEECCCCceeEEeeccCCcEEEEEEeCC--CCEEEEECCCCEEEEEE
Confidence            57899999 899999999999999999999999999987643322211    111111111  12234456788999999


Q ss_pred             CCCcCcccccccccCCeEEEEEecCCCcEEEEEcCCCeEEEEEcCCCCcceEEEeeccCCceeEEEeccCCCCeEEEEcC
Q 021657           78 GPSVGPRGIYNGHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSA  157 (309)
Q Consensus        78 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~  157 (309)
                      ..+.+.+..+.+|...|.+++|+|++ .+|++|+.|++|++||++++.. ....+.+|...|.+++|+|.++..|++|+.
T Consensus        84 ~~~~~~~~~~~~h~~~v~~~~~~~~~-~~l~sgs~D~~v~lWd~~~~~~-~~~~~~~h~~~v~~v~~~p~~~~~l~sgs~  161 (304)
T 2ynn_A           84 YNTGEKVVDFEAHPDYIRSIAVHPTK-PYVLSGSDDLTVKLWNWENNWA-LEQTFEGHEHFVMCVAFNPKDPSTFASGCL  161 (304)
T ss_dssp             TTTCCEEEEEECCSSCEEEEEECSSS-SEEEEEETTSCEEEEEGGGTTE-EEEEECCCCSCEEEEEECTTCTTEEEEEET
T ss_pred             CCCCcEEEEEeCCCCcEEEEEEcCCC-CEEEEECCCCeEEEEECCCCcc-hhhhhcccCCcEEEEEECCCCCCEEEEEeC
Confidence            99999999999999999999999998 8899999999999999987642 456778999999999999956789999999


Q ss_pred             CCcEEEEecCCCCCCCCCCceeeec-cCCCCeeEEEEec--CCCcEEEEecCCCcEEEEeCCcccccccCCCCCcCCCCc
Q 021657          158 DNSVRMFDRRNLTSNGVGSPINKFE-GHSAAVLCVQWSP--DKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAG  234 (309)
Q Consensus       158 dg~i~i~d~~~~~~~~~~~~~~~~~-~~~~~v~~~~~~~--~~~~l~~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~  234 (309)
                      |+.|++||+++      ..+...+. .+...+..++|+|  ++. ++++|+.|+.|++||++.               ..
T Consensus       162 D~~v~iwd~~~------~~~~~~~~~~~~~~v~~~~~~~~~~~~-~l~s~s~D~~i~iWd~~~---------------~~  219 (304)
T 2ynn_A          162 DRTVKVWSLGQ------STPNFTLTTGQERGVNYVDYYPLPDKP-YMITASDDLTIKIWDYQT---------------KS  219 (304)
T ss_dssp             TSEEEEEETTC------SSCSEEEECCCTTCEEEEEECCSTTCC-EEEEEETTSEEEEEETTT---------------TE
T ss_pred             CCeEEEEECCC------CCccceeccCCcCcEEEEEEEEcCCCC-EEEEEcCCCeEEEEeCCC---------------Cc
Confidence            99999999987      55554443 4567899999987  566 467999999999999987               45


Q ss_pred             eeeeecCCCcceeeEEEccCCCeEEEEecCCCCCCCCCCeEEEEEccccccCChhhHhHhhhcccceEEEeeeCC
Q 021657          235 LFFQHAGHRDKVVDFHWNASDPWTVVSVSDDCDSTGGGGTLQIWRMSDLIYRPQDEVLAELEKFKAHVISCTSKP  309 (309)
Q Consensus       235 ~~~~~~~~~~~v~~~~~~~~~~~~~~s~s~d~~s~~~dg~v~vw~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~P  309 (309)
                      ++..+.+|...|.+++|+|+++. ++       +|+.||+|++||+.      +.++++++..|.+.+++++|+|
T Consensus       220 ~~~~~~~h~~~v~~~~~~p~~~~-l~-------s~s~Dg~i~iWd~~------~~~~~~~~~~~~~~~~~~~~~~  280 (304)
T 2ynn_A          220 CVATLEGHMSNVSFAVFHPTLPI-II-------SGSEDGTLKIWNSS------TYKVEKTLNVGLERSWCIATHP  280 (304)
T ss_dssp             EEEEEECCSSCEEEEEECSSSSE-EE-------EEETTSCEEEEETT------TCCEEEEECCSSSSEEEEEECT
T ss_pred             cceeeCCCCCCEEEEEECCCCCE-EE-------EEcCCCeEEEEECC------CCceeeeccCCCccEEEEEECC
Confidence            67788999999999999998875 44       44455999999998      6788888999999999999887

>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1

Probab=100.00  E-value=6.5e-46  Score=305.14  Aligned_cols=265  Identities=20%  Similarity=0.329  Sum_probs=227.0

Q ss_pred             cccCCCCCcceEEEEECCCCCEEEEecCCCcEEEEeCCccccccccC----CccccccCCCCceeecCCCCCCCCcccCC
Q 021657            2 EILTGHQDNAEFALAMCPTEPYVLSGGKDKSVVLWSIQDHITSSATD----PATAKSAGSSGSIIKQSPKPGDGNDKAAD   77 (309)
Q Consensus         2 ~~l~~H~~~~V~~~~~~~~~~~l~t~~~dg~i~vwd~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   77 (309)
                      ..|.+|.+ +|++++|+|++++|++|+.||+|+|||+.++.......    ...........  ..+..+..++.+++|+
T Consensus       102 ~~l~gh~~-~V~~~~~~p~~~~l~s~s~Dg~i~vwd~~~~~~~~~l~~h~~~V~~v~~~~~~--~~l~sgs~D~~i~iwd  178 (410)
T 1vyh_C          102 YALSGHRS-PVTRVIFHPVFSVMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDHSG--KLLASCSADMTIKLWD  178 (410)
T ss_dssp             CEEECCSS-CEEEEEECSSSSEEEEEESSSCEEEEETTTCCCCEEECCCSSCEEEEEECTTS--SEEEEEETTSCCCEEE
T ss_pred             EeecccCC-cEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEEeccCCcEEEEEEcCCC--CEEEEEeCCCeEEEEe
Confidence            35789999 89999999999999999999999999998874433222    11111222222  2344456789999999


Q ss_pred             CCCcCcccccccccCCeEEEEEecCCCcEEEEEcCCCeEEEEEcCCCCcceEEEeeccCCceeEEEeccCCCCeEEEEcC
Q 021657           78 GPSVGPRGIYNGHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSA  157 (309)
Q Consensus        78 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~  157 (309)
                      ..+.+.+..+.+|...|.+++|+|++ .+|++|+.|++|++||++++.  ....+.+|...|.+++++| ++.+|++|+.
T Consensus       179 ~~~~~~~~~~~~h~~~V~~v~~~p~~-~~l~s~s~D~~i~~wd~~~~~--~~~~~~~h~~~v~~~~~~~-~g~~l~s~s~  254 (410)
T 1vyh_C          179 FQGFECIRTMHGHDHNVSSVSIMPNG-DHIVSASRDKTIKMWEVQTGY--CVKTFTGHREWVRMVRPNQ-DGTLIASCSN  254 (410)
T ss_dssp             TTSSCEEECCCCCSSCEEEEEECSSS-SEEEEEETTSEEEEEETTTCC--EEEEEECCSSCEEEEEECT-TSSEEEEEET
T ss_pred             CCCCceeEEEcCCCCCEEEEEEeCCC-CEEEEEeCCCeEEEEECCCCc--EEEEEeCCCccEEEEEECC-CCCEEEEEcC
Confidence            99999999999999999999999998 889999999999999999888  6788889999999999999 9999999999


Q ss_pred             CCcEEEEecCCCCCCCCCCceeeeccCCCCeeEEEEecC--------------------CCcEEEEecCCCcEEEEeCCc
Q 021657          158 DNSVRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWSPD--------------------KSSVFGSSAEDGLLNIWDYEK  217 (309)
Q Consensus       158 dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~--------------------~~~l~~~~~~dg~i~iwd~~~  217 (309)
                      |+.|++||+++      ++....+..|...|.+++|+|+                    +. ++++|+.|+.|++||++.
T Consensus       255 D~~v~vwd~~~------~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~-~l~sgs~D~~i~iwd~~~  327 (410)
T 1vyh_C          255 DQTVRVWVVAT------KECKAELREHRHVVECISWAPESSYSSISEATGSETKKSGKPGP-FLLSGSRDKTIKMWDVST  327 (410)
T ss_dssp             TSCEEEEETTT------CCEEEEECCCSSCEEEEEECCSCGGGGGGGCCSCC-------CC-EEEEEETTSEEEEEETTT
T ss_pred             CCeEEEEECCC------CceeeEecCCCceEEEEEEcCcccccchhhhccccccccCCCCC-EEEEEeCCCeEEEEECCC
Confidence            99999999998      8888999999999999999997                    44 477999999999999987


Q ss_pred             ccccccCCCCCcCCCCceeeeecCCCcceeeEEEccCCCeEEEEecCCCCCCCCCCeEEEEEccccccCChhhHhHhhhc
Q 021657          218 VGKKVEQGPRTTNYPAGLFFQHAGHRDKVVDFHWNASDPWTVVSVSDDCDSTGGGGTLQIWRMSDLIYRPQDEVLAELEK  297 (309)
Q Consensus       218 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~s~d~~s~~~dg~v~vw~~~~~~~~~~~~~~~~~~~  297 (309)
                                     ..++..+.+|...|.+++|+|++.+++        +|+.||.|++||+.      +++++.++.+
T Consensus       328 ---------------~~~~~~~~~h~~~v~~v~~~~~g~~l~--------s~s~D~~i~vwd~~------~~~~~~~~~~  378 (410)
T 1vyh_C          328 ---------------GMCLMTLVGHDNWVRGVLFHSGGKFIL--------SCADDKTLRVWDYK------NKRCMKTLNA  378 (410)
T ss_dssp             ---------------TEEEEEEECCSSCEEEEEECSSSSCEE--------EEETTTEEEEECCT------TSCCCEEEEC
T ss_pred             ---------------CceEEEEECCCCcEEEEEEcCCCCEEE--------EEeCCCeEEEEECC------CCceEEEEcC
Confidence                           456677889999999999999888765        45555999999998      6778889999


Q ss_pred             ccceEEEeeeCC
Q 021657          298 FKAHVISCTSKP  309 (309)
Q Consensus       298 h~~~v~~~~~~P  309 (309)
                      |.+.|++++|+|
T Consensus       379 h~~~v~~l~~~~  390 (410)
T 1vyh_C          379 HEHFVTSLDFHK  390 (410)
T ss_dssp             CSSCEEEEEECS
T ss_pred             CCCcEEEEEEcC
Confidence            999999999987

>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}

Probab=100.00  E-value=3.2e-46  Score=297.06  Aligned_cols=267  Identities=17%  Similarity=0.272  Sum_probs=221.8

Q ss_pred             cccCCCCCcceEEEEECCC----CCEEEEecCCCcEEEEeCCcccccc----ccCCccccccCCCCceeecCCCCCCCCc
Q 021657            2 EILTGHQDNAEFALAMCPT----EPYVLSGGKDKSVVLWSIQDHITSS----ATDPATAKSAGSSGSIIKQSPKPGDGND   73 (309)
Q Consensus         2 ~~l~~H~~~~V~~~~~~~~----~~~l~t~~~dg~i~vwd~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~   73 (309)
                      +.+++|.+ .|++++|+|+    +.+|+||+.|++|+||++.......    ..................+..+..++.+
T Consensus        26 ~~~~~H~~-~V~~v~~~~~~~~~~~~l~tgs~D~~v~vW~~~~~~~~~~~~l~gh~~~v~~~~~~~~~~~l~s~s~D~~i  104 (321)
T 3ow8_A           26 KQEQAHDD-AIWSVAWGTNKKENSETVVTGSLDDLVKVWKWRDERLDLQWSLEGHQLGVVSVDISHTLPIAASSSLDAHI  104 (321)
T ss_dssp             EETTSSSS-CEEEEEEC-------CEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECSSSSEEEEEETTSEE
T ss_pred             eecccCCC-cEEEEEEecCCCCCCCEEEEEcCCCCEEEEECCCCCeeeeeeeccCCCCEEEEEECCCCCEEEEEeCCCcE
Confidence            46789999 8999999985    5689999999999999987653211    1111111111111111233445678899


Q ss_pred             ccCCCCCcCcccccccccCCeEEEEEecCCCcEEEEEcCCCeEEEEEcCCCCcceEEEeeccCCceeEEEeccCCCCeEE
Q 021657           74 KAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLIL  153 (309)
Q Consensus        74 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~  153 (309)
                      ++|+..+.+.+..+..|...+.+++|+|++ .+|++|+.||.|++||+++++  ....+..|...|.+++|+| ++++|+
T Consensus       105 ~lWd~~~~~~~~~~~~~~~~~~~~~~spdg-~~l~~g~~dg~v~i~~~~~~~--~~~~~~~~~~~v~~~~~sp-dg~~la  180 (321)
T 3ow8_A          105 RLWDLENGKQIKSIDAGPVDAWTLAFSPDS-QYLATGTHVGKVNIFGVESGK--KEYSLDTRGKFILSIAYSP-DGKYLA  180 (321)
T ss_dssp             EEEETTTTEEEEEEECCTTCCCCEEECTTS-SEEEEECTTSEEEEEETTTCS--EEEEEECSSSCEEEEEECT-TSSEEE
T ss_pred             EEEECCCCCEEEEEeCCCccEEEEEECCCC-CEEEEEcCCCcEEEEEcCCCc--eeEEecCCCceEEEEEECC-CCCEEE
Confidence            999999999999999999999999999998 889999999999999999887  5677778889999999999 999999


Q ss_pred             EEcCCCcEEEEecCCCCCCCCCCceeeeccCCCCeeEEEEecCCCcEEEEecCCCcEEEEeCCcccccccCCCCCcCCCC
Q 021657          154 TGSADNSVRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPA  233 (309)
Q Consensus       154 ~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~  233 (309)
                      +|+.||.|++||+++      ++.+..+.+|..+|++++|+|++++ |++|+.|+.|++||++.               .
T Consensus       181 sg~~dg~i~iwd~~~------~~~~~~~~~h~~~v~~l~~spd~~~-l~s~s~dg~i~iwd~~~---------------~  238 (321)
T 3ow8_A          181 SGAIDGIINIFDIAT------GKLLHTLEGHAMPIRSLTFSPDSQL-LVTASDDGYIKIYDVQH---------------A  238 (321)
T ss_dssp             EEETTSCEEEEETTT------TEEEEEECCCSSCCCEEEECTTSCE-EEEECTTSCEEEEETTT---------------C
T ss_pred             EEcCCCeEEEEECCC------CcEEEEEcccCCceeEEEEcCCCCE-EEEEcCCCeEEEEECCC---------------c
Confidence            999999999999998      8899999999999999999999995 67999999999999987               3


Q ss_pred             ceeeeecCCCcceeeEEEccCCCeEEEEecCCCCCCCCCCeEEEEEccccccCChhhHhHhhhcccceEEEeeeCC
Q 021657          234 GLFFQHAGHRDKVVDFHWNASDPWTVVSVSDDCDSTGGGGTLQIWRMSDLIYRPQDEVLAELEKFKAHVISCTSKP  309 (309)
Q Consensus       234 ~~~~~~~~~~~~v~~~~~~~~~~~~~~s~s~d~~s~~~dg~v~vw~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~P  309 (309)
                      .....+.+|...|.+++|+|++.+++        +|+.|++|++||+.      +++++.++.+|.+.|.+++|+|
T Consensus       239 ~~~~~~~~h~~~v~~~~~sp~~~~l~--------s~s~D~~v~iwd~~------~~~~~~~~~~h~~~v~~v~~s~  300 (321)
T 3ow8_A          239 NLAGTLSGHASWVLNVAFCPDDTHFV--------SSSSDKSVKVWDVG------TRTCVHTFFDHQDQVWGVKYNG  300 (321)
T ss_dssp             CEEEEECCCSSCEEEEEECTTSSEEE--------EEETTSCEEEEETT------TTEEEEEECCCSSCEEEEEECT
T ss_pred             ceeEEEcCCCCceEEEEECCCCCEEE--------EEeCCCcEEEEeCC------CCEEEEEEcCCCCcEEEEEECC
Confidence            45667889999999999999888655        44455999999999      7888899999999999999987

>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*

Probab=100.00  E-value=4.4e-44  Score=287.38  Aligned_cols=266  Identities=16%  Similarity=0.261  Sum_probs=213.6

Q ss_pred             cccCCCCCcceEEEEECCCCCEEEEecCCCcEEEEeCCccccccccCC----ccccccCCCCceeecCCCCCCCCcccCC
Q 021657            2 EILTGHQDNAEFALAMCPTEPYVLSGGKDKSVVLWSIQDHITSSATDP----ATAKSAGSSGSIIKQSPKPGDGNDKAAD   77 (309)
Q Consensus         2 ~~l~~H~~~~V~~~~~~~~~~~l~t~~~dg~i~vwd~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~   77 (309)
                      ++|+||.+ .|++++|+|++++|++|+.||+|+|||+.++........    ..........  ..+..+..++.+.+|+
T Consensus        49 ~~l~gH~~-~v~~~~~s~d~~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~~~v~~~~~s~~~--~~l~s~~~d~~v~iw~  125 (340)
T 1got_B           49 RTLRGHLA-KIYAMHWGTDSRLLLSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSG--NYVACGGLDNICSIYN  125 (340)
T ss_dssp             EEECCCSS-CEEEEEECTTSSEEEEEETTTEEEEEETTTCCEEEEEECSSSCEEEEEECTTS--SEEEEEETTCEEEEEE
T ss_pred             eeecCCCC-ceEEEEECCCCCEEEEEeCCCcEEEEECCCCCcceEeecCCccEEEEEECCCC--CEEEEEeCCCeEEEEE
Confidence            46899999 899999999999999999999999999987643322211    1111111111  1223345577888888


Q ss_pred             CCCcC----cccccccccCCeEEEEEecCCCcEEEEEcCCCeEEEEEcCCCCcceEEEeeccCCceeEEEeccCCCCeEE
Q 021657           78 GPSVG----PRGIYNGHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLIL  153 (309)
Q Consensus        78 ~~~~~----~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~  153 (309)
                      ..+..    ....+.+|...|.++.|++++  .+++++.|+.|++||+++++  ....+.+|...|.+++|+| ++.+++
T Consensus       126 ~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~--~l~s~s~d~~i~~wd~~~~~--~~~~~~~h~~~v~~~~~~~-~~~~l~  200 (340)
T 1got_B          126 LKTREGNVRVSRELAGHTGYLSCCRFLDDN--QIVTSSGDTTCALWDIETGQ--QTTTFTGHTGDVMSLSLAP-DTRLFV  200 (340)
T ss_dssp             TTTCSBSCEEEEEEECCSSCEEEEEEEETT--EEEEEETTSCEEEEETTTTE--EEEEECCCSSCEEEEEECT-TSSEEE
T ss_pred             CccCCCcceeEEEecCCCccEEEEEECCCC--cEEEEECCCcEEEEECCCCc--EEEEEcCCCCceEEEEECC-CCCEEE
Confidence            76643    445678899999999999986  48899999999999998887  6778889999999999999 999999


Q ss_pred             EEcCCCcEEEEecCCCCCCCCCCceeeeccCCCCeeEEEEecCCCcEEEEecCCCcEEEEeCCcccccccCCCCCcCCCC
Q 021657          154 TGSADNSVRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPA  233 (309)
Q Consensus       154 ~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~  233 (309)
                      +|+.|+.|++||+++      +..+..+.+|...|++++|+|++.. |++|+.||.|++||++.....            
T Consensus       201 sg~~d~~v~~wd~~~------~~~~~~~~~h~~~v~~v~~~p~~~~-l~s~s~d~~v~iwd~~~~~~~------------  261 (340)
T 1got_B          201 SGACDASAKLWDVRE------GMCRQTFTGHESDINAICFFPNGNA-FATGSDDATCRLFDLRADQEL------------  261 (340)
T ss_dssp             EEETTSCEEEEETTT------CSEEEEECCCSSCEEEEEECTTSSE-EEEEETTSCEEEEETTTTEEE------------
T ss_pred             EEeCCCcEEEEECCC------CeeEEEEcCCcCCEEEEEEcCCCCE-EEEEcCCCcEEEEECCCCcEE------------
Confidence            999999999999998      8889999999999999999999995 679999999999999872211            


Q ss_pred             ceeeeecCCCcceeeEEEccCCCeEEEEecCCCCCCCCCCeEEEEEccccccCChhhHhHhhhcccceEEEeeeCC
Q 021657          234 GLFFQHAGHRDKVVDFHWNASDPWTVVSVSDDCDSTGGGGTLQIWRMSDLIYRPQDEVLAELEKFKAHVISCTSKP  309 (309)
Q Consensus       234 ~~~~~~~~~~~~v~~~~~~~~~~~~~~s~s~d~~s~~~dg~v~vw~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~P  309 (309)
                       .......+...|.+++|+|++.+++        +|+.||.|++||+.      ..+++..+.+|.++|.+++|+|
T Consensus       262 -~~~~~~~~~~~v~~~~~s~~g~~l~--------~g~~d~~i~vwd~~------~~~~~~~~~~h~~~v~~~~~s~  322 (340)
T 1got_B          262 -MTYSHDNIICGITSVSFSKSGRLLL--------AGYDDFNCNVWDAL------KADRAGVLAGHDNRVSCLGVTD  322 (340)
T ss_dssp             -EEECCTTCCSCEEEEEECTTSSEEE--------EEETTSEEEEEETT------TCCEEEEEECCSSCEEEEEECT
T ss_pred             -EEEccCCcccceEEEEECCCCCEEE--------EECCCCeEEEEEcc------cCcEeeEeecCCCcEEEEEEcC
Confidence             1112223445799999999888655        44555999999998      5677788999999999999987

>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}

Probab=100.00  E-value=1.3e-43  Score=286.09  Aligned_cols=264  Identities=17%  Similarity=0.247  Sum_probs=202.6

Q ss_pred             cCCCCCcceEEEEECCCCCEEEEecC------CCcEEEEeCCccccccccCC--------ccccccCCCCceeecCCCCC
Q 021657            4 LTGHQDNAEFALAMCPTEPYVLSGGK------DKSVVLWSIQDHITSSATDP--------ATAKSAGSSGSIIKQSPKPG   69 (309)
Q Consensus         4 l~~H~~~~V~~~~~~~~~~~l~t~~~------dg~i~vwd~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~   69 (309)
                      ..+|++ .|++++|+|||++|++|+.      |+.|++|+..++........        .............   .+..
T Consensus        38 p~~H~~-~V~~v~fSpDG~~las~s~d~~~~wd~~v~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~s~d~~~l---~~s~  113 (357)
T 4g56_B           38 PACMEV-QIGAVRYRRDGALLLAASSLSSRTWGGSIWVFKDPEGAPNESLCTAGVQTEAGVTDVAWVSEKGIL---VASD  113 (357)
T ss_dssp             --CCCS-EEEEEEECSSSCEEEEEECSSSSSCCEEEEEESSCC---CGGGCSEEEECSSCEEEEEEETTTEEE---EEET
T ss_pred             cccccC-CEEEEEECCCCCEEEEEcCCCCccccCeEEEEECCCCCcceeEecccCCCCCCEEEEEEcCCCCEE---EEEC
Confidence            346888 8999999999999999997      78899999876532222111        1111111122221   2345


Q ss_pred             CCCcccCCCCCcCcccc----cccccCCeEEEEEecCCCcEEEEEcCCCeEEEEEcCCCCcceEEEeeccCCceeEEEec
Q 021657           70 DGNDKAADGPSVGPRGI----YNGHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWN  145 (309)
Q Consensus        70 ~~~~~~~~~~~~~~~~~----~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~  145 (309)
                      ++.+++|+..+.+....    ..+|...|++++|+|++ .+|++|+.|+.|++||+++++  ....+.+|...|++++|+
T Consensus       114 dg~v~lWd~~~~~~~~~~~~~~~~h~~~V~~v~~spdg-~~l~sgs~dg~v~iwd~~~~~--~~~~~~~h~~~v~~v~~s  190 (357)
T 4g56_B          114 SGAVELWEILEKESLLVNKFAKYEHDDIVKTLSVFSDG-TQAVSGGKDFSVKVWDLSQKA--VLKSYNAHSSEVNCVAAC  190 (357)
T ss_dssp             TSCEEEC--------CCCCEEECCCSSCEEEEEECSSS-SEEEEEETTSCEEEEETTTTE--EEEEECCCSSCEEEEEEC
T ss_pred             CCEEEEeeccccceeEEEeeccCCCCCCEEEEEECCCC-CEEEEEeCCCeEEEEECCCCc--EEEEEcCCCCCEEEEEEc
Confidence            78899999887765432    34799999999999998 889999999999999998887  778888999999999999


Q ss_pred             cCCCCeEEEEcCCCcEEEEecCCCCCCCCCCceeee--ccCCCCeeEEEEecCCCcEEEEecCCCcEEEEeCCccccccc
Q 021657          146 PLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKF--EGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVE  223 (309)
Q Consensus       146 ~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~--~~~~~~v~~~~~~~~~~~l~~~~~~dg~i~iwd~~~~~~~~~  223 (309)
                      |....++++++.||.|++||+++      ++++..+  ..+...+++++|+|++..+|++|+.|+.|++||++.      
T Consensus       191 ~~~~~~~~s~~~dg~v~~wd~~~------~~~~~~~~~~~~~~~v~~v~~sp~~~~~la~g~~d~~i~~wd~~~------  258 (357)
T 4g56_B          191 PGKDTIFLSCGEDGRILLWDTRK------PKPATRIDFCASDTIPTSVTWHPEKDDTFACGDETGNVSLVNIKN------  258 (357)
T ss_dssp             TTCSSCEEEEETTSCEEECCTTS------SSCBCBCCCTTCCSCEEEEEECTTSTTEEEEEESSSCEEEEESSC------
T ss_pred             cCCCceeeeeccCCceEEEECCC------CceeeeeeeccccccccchhhhhcccceEEEeecccceeEEECCC------
Confidence            93346899999999999999998      5555444  456778999999999877889999999999999987      


Q ss_pred             CCCCCcCCCCceeeeecCCCcceeeEEEccCCCeEEEEecCCCCCCCCCCeEEEEEccccccCChhhHhHhhhcccceEE
Q 021657          224 QGPRTTNYPAGLFFQHAGHRDKVVDFHWNASDPWTVVSVSDDCDSTGGGGTLQIWRMSDLIYRPQDEVLAELEKFKAHVI  303 (309)
Q Consensus       224 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~s~d~~s~~~dg~v~vw~~~~~~~~~~~~~~~~~~~h~~~v~  303 (309)
                               ...+..+.+|...|++++|+|++..+++++|.|       ++|+|||++      .++++.. .+|.+.|+
T Consensus       259 ---------~~~~~~~~~~~~~v~~l~~sp~~~~~lasgs~D-------~~i~iwd~~------~~~~~~~-~~H~~~V~  315 (357)
T 4g56_B          259 ---------PDSAQTSAVHSQNITGLAYSYHSSPFLASISED-------CTVAVLDAD------FSEVFRD-LSHRDFVT  315 (357)
T ss_dssp             ---------GGGCEEECCCSSCEEEEEECSSSSCCEEEEETT-------SCEEEECTT------SCEEEEE-CCCSSCEE
T ss_pred             ---------CcEeEEEeccceeEEEEEEcCCCCCEEEEEeCC-------CEEEEEECC------CCcEeEE-CCCCCCEE
Confidence                     345567789999999999999988788877766       999999998      5555554 47999999


Q ss_pred             EeeeCC
Q 021657          304 SCTSKP  309 (309)
Q Consensus       304 ~~~~~P  309 (309)
                      +++|+|
T Consensus       316 ~vafsP  321 (357)
T 4g56_B          316 GVAWSP  321 (357)
T ss_dssp             EEEECS
T ss_pred             EEEEeC
Confidence            999997

>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}

Probab=100.00  E-value=1.9e-43  Score=284.92  Aligned_cols=268  Identities=18%  Similarity=0.306  Sum_probs=211.0

Q ss_pred             cccCCCCCcceEEEEECCCCCEEEEecCCCcEEEEeCCccccccccCC----ccccccCCCCceeecCCCCCCCCcccCC
Q 021657            2 EILTGHQDNAEFALAMCPTEPYVLSGGKDKSVVLWSIQDHITSSATDP----ATAKSAGSSGSIIKQSPKPGDGNDKAAD   77 (309)
Q Consensus         2 ~~l~~H~~~~V~~~~~~~~~~~l~t~~~dg~i~vwd~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~   77 (309)
                      ++|+||.+ .|++++|+|++++|+||+.||+|+|||..+.........    ..........  ..+..+..++.+.+|+
T Consensus        58 ~~l~gH~~-~V~~~~~s~d~~~l~s~s~Dg~v~vWd~~~~~~~~~~~~~~~~v~~~~~sp~g--~~lasg~~d~~i~v~~  134 (354)
T 2pbi_B           58 RTLKGHGN-KVLCMDWCKDKRRIVSSSQDGKVIVWDSFTTNKEHAVTMPCTWVMACAYAPSG--CAIACGGLDNKCSVYP  134 (354)
T ss_dssp             EEEECCSS-CEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECSSSCCCEEEECTTS--SEEEEESTTSEEEEEE
T ss_pred             EEecCCCC-eEEEEEECCCCCEEEEEeCCCeEEEEECCCCCcceEEecCCCCEEEEEECCCC--CEEEEeeCCCCEEEEE
Confidence            46889999 899999999999999999999999999876533221111    1111111111  1223344566677776


Q ss_pred             CCCc------CcccccccccCCeEEEEEecCCCcEEEEEcCCCeEEEEEcCCCCcceEEEeeccCCceeEEEeccC-CCC
Q 021657           78 GPSV------GPRGIYNGHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPL-DDN  150 (309)
Q Consensus        78 ~~~~------~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~-~~~  150 (309)
                      ....      .....+.+|...|.++.|+|++ ..|++++.|++|++||+++++  ....+.+|...|.+++|+|. +++
T Consensus       135 ~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~-~~l~t~s~D~~v~lwd~~~~~--~~~~~~~h~~~v~~~~~~~~~~g~  211 (354)
T 2pbi_B          135 LTFDKNENMAAKKKSVAMHTNYLSACSFTNSD-MQILTASGDGTCALWDVESGQ--LLQSFHGHGADVLCLDLAPSETGN  211 (354)
T ss_dssp             CCCCTTCCSGGGCEEEEECSSCEEEEEECSSS-SEEEEEETTSEEEEEETTTCC--EEEEEECCSSCEEEEEECCCSSCC
T ss_pred             EeccccccccccceeeeccCCcEEEEEEeCCC-CEEEEEeCCCcEEEEeCCCCe--EEEEEcCCCCCeEEEEEEeCCCCC
Confidence            5432      3345667899999999999998 789999999999999999888  77888899999999999873 357


Q ss_pred             eEEEEcCCCcEEEEecCCCCCCCCCCceeeeccCCCCeeEEEEecCCCcEEEEecCCCcEEEEeCCcccccccCCCCCcC
Q 021657          151 LILTGSADNSVRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTN  230 (309)
Q Consensus       151 ~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~dg~i~iwd~~~~~~~~~~~~~~~~  230 (309)
                      +|++|+.||.|++||+++      ++++..+..|...|++++|+|++.. +++|+.|+.|++||++.....         
T Consensus       212 ~l~sgs~Dg~v~~wd~~~------~~~~~~~~~h~~~v~~v~~~p~~~~-l~s~s~D~~v~lwd~~~~~~~---------  275 (354)
T 2pbi_B          212 TFVSGGCDKKAMVWDMRS------GQCVQAFETHESDVNSVRYYPSGDA-FASGSDDATCRLYDLRADREV---------  275 (354)
T ss_dssp             EEEEEETTSCEEEEETTT------CCEEEEECCCSSCEEEEEECTTSSE-EEEEETTSCEEEEETTTTEEE---------
T ss_pred             EEEEEeCCCeEEEEECCC------CcEEEEecCCCCCeEEEEEeCCCCE-EEEEeCCCeEEEEECCCCcEE---------
Confidence            999999999999999999      8899999999999999999999985 679999999999999872211         


Q ss_pred             CCCceeeeecCCCcceeeEEEccCCCeEEEEecCCCCCCCCCCeEEEEEccccccCChhhHhHhhhcccceEEEeeeCC
Q 021657          231 YPAGLFFQHAGHRDKVVDFHWNASDPWTVVSVSDDCDSTGGGGTLQIWRMSDLIYRPQDEVLAELEKFKAHVISCTSKP  309 (309)
Q Consensus       231 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~s~d~~s~~~dg~v~vw~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~P  309 (309)
                          .......+...+.+++|+|++.+++        +|+.|+.|++||+.      +++++..+.+|.+.|.+++|+|
T Consensus       276 ----~~~~~~~~~~~~~~~~~s~~g~~l~--------~g~~d~~i~vwd~~------~~~~~~~l~~h~~~v~~l~~sp  336 (354)
T 2pbi_B          276 ----AIYSKESIIFGASSVDFSLSGRLLF--------AGYNDYTINVWDVL------KGSRVSILFGHENRVSTLRVSP  336 (354)
T ss_dssp             ----EEECCTTCCSCEEEEEECTTSSEEE--------EEETTSCEEEEETT------TCSEEEEECCCSSCEEEEEECT
T ss_pred             ----EEEcCCCcccceeEEEEeCCCCEEE--------EEECCCcEEEEECC------CCceEEEEECCCCcEEEEEECC
Confidence                1112223345789999999887655        44455999999998      6777788899999999999998

>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}

Probab=100.00  E-value=2.2e-43  Score=282.81  Aligned_cols=227  Identities=22%  Similarity=0.349  Sum_probs=189.7

Q ss_pred             CCCcceEEEEECCCCCEEEEecCCCcEEEEeCCccccccccCCccccccCCCCceeecCCCCCCCCcccCCCCCcCcccc
Q 021657            7 HQDNAEFALAMCPTEPYVLSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGI   86 (309)
Q Consensus         7 H~~~~V~~~~~~~~~~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   86 (309)
                      |.. .|++++|+|++ .|++|+.||+|+|||++++.....                                    ....
T Consensus        81 ~~~-~v~~~~~s~d~-~l~~~s~dg~v~lWd~~~~~~~~~------------------------------------~~~~  122 (344)
T 4gqb_B           81 TEA-GVADLTWVGER-GILVASDSGAVELWELDENETLIV------------------------------------SKFC  122 (344)
T ss_dssp             ESS-CEEEEEEETTT-EEEEEETTSEEEEEEECTTSSCEE------------------------------------EEEE
T ss_pred             cCC-CEEEEEEeCCC-eEEEEECCCEEEEEeccCCCceeE------------------------------------eecc
Confidence            445 69999999985 688999999999999985421110                                    1123


Q ss_pred             cccccCCeEEEEEecCCCcEEEEEcCCCeEEEEEcCCCCcceEEEeeccCCceeEEEeccCCCCeEEEEcCCCcEEEEec
Q 021657           87 YNGHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDR  166 (309)
Q Consensus        87 ~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~  166 (309)
                      +.+|...|++++|+|++ .+|++|+.|++|++||+++++  ....+.+|...|.+++|+|.+..+|++++.|+.|++||+
T Consensus       123 ~~~H~~~V~~v~~spdg-~~l~sgs~d~~i~iwd~~~~~--~~~~~~~h~~~V~~~~~~~~~~~~l~s~s~D~~v~iwd~  199 (344)
T 4gqb_B          123 KYEHDDIVSTVSVLSSG-TQAVSGSKDICIKVWDLAQQV--VLSSYRAHAAQVTCVAASPHKDSVFLSCSEDNRILLWDT  199 (344)
T ss_dssp             EECCSSCEEEEEECTTS-SEEEEEETTSCEEEEETTTTE--EEEEECCCSSCEEEEEECSSCTTEEEEEETTSCEEEEET
T ss_pred             ccCCCCCEEEEEECCCC-CEEEEEeCCCeEEEEECCCCc--EEEEEcCcCCceEEEEecCCCCCceeeeccccccccccc
Confidence            45899999999999998 889999999999999999887  788889999999999999944468899999999999999


Q ss_pred             CCCCCCCCCCceeeec--cCCCCeeEEEEecCCCcEEEEecCCCcEEEEeCCcccccccCCCCCcCCCCceeeeecCCCc
Q 021657          167 RNLTSNGVGSPINKFE--GHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRD  244 (309)
Q Consensus       167 ~~~~~~~~~~~~~~~~--~~~~~v~~~~~~~~~~~l~~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  244 (309)
                      ++      ++++..+.  .+...+++++|+|++..++++|+.||.|++||++.               .+++..+.+|..
T Consensus       200 ~~------~~~~~~~~~~~~~~~~~~~~~~p~~~~~l~sg~~dg~v~~wd~~~---------------~~~~~~~~~h~~  258 (344)
T 4gqb_B          200 RC------PKPASQIGCSAPGYLPTSLAWHPQQSEVFVFGDENGTVSLVDTKS---------------TSCVLSSAVHSQ  258 (344)
T ss_dssp             TS------SSCEEECC----CCCEEEEEECSSCTTEEEEEETTSEEEEEESCC-----------------CCEEEECCSS
T ss_pred             cc------cceeeeeecceeeccceeeeecCCCCcceEEeccCCcEEEEECCC---------------CcEEEEEcCCCC
Confidence            98      77777664  34567899999998877888999999999999987               445677889999


Q ss_pred             ceeeEEEccCCCeEEEEecCCCCCCCCCCeEEEEEccccccCChhhHhHhhhcccceEEEeeeCC
Q 021657          245 KVVDFHWNASDPWTVVSVSDDCDSTGGGGTLQIWRMSDLIYRPQDEVLAELEKFKAHVISCTSKP  309 (309)
Q Consensus       245 ~v~~~~~~~~~~~~~~s~s~d~~s~~~dg~v~vw~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~P  309 (309)
                      .|++++|+|++..+++++|.|       ++|+|||+.      .+++ ..+.+|.+.|.+++|+|
T Consensus       259 ~v~~v~fsp~g~~~lasgs~D-------~~i~vwd~~------~~~~-~~~~~H~~~V~~v~~sp  309 (344)
T 4gqb_B          259 CVTGLVFSPHSVPFLASLSED-------CSLAVLDSS------LSEL-FRSQAHRDFVRDATWSP  309 (344)
T ss_dssp             CEEEEEECSSSSCCEEEEETT-------SCEEEECTT------CCEE-EEECCCSSCEEEEEECS
T ss_pred             CEEEEEEccCCCeEEEEEeCC-------CeEEEEECC------CCcE-EEEcCCCCCEEEEEEeC
Confidence            999999999987778877666       999999998      4443 45789999999999997

>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}

Probab=100.00  E-value=5.7e-43  Score=280.38  Aligned_cols=209  Identities=22%  Similarity=0.324  Sum_probs=178.9

Q ss_pred             cCCCCCcceEEEEECCCCCEEEEecCCCcEEEEeCCccccccccCCccccccCCCCceeecCCCCCCCCcccCCCCCcCc
Q 021657            4 LTGHQDNAEFALAMCPTEPYVLSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGP   83 (309)
Q Consensus         4 l~~H~~~~V~~~~~~~~~~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   83 (309)
                      +.+|.+ .|++++|+|+|++|++|+.||+|++||+++                                        .+.
T Consensus       123 ~~~H~~-~V~~v~~spdg~~l~sgs~d~~i~iwd~~~----------------------------------------~~~  161 (344)
T 4gqb_B          123 KYEHDD-IVSTVSVLSSGTQAVSGSKDICIKVWDLAQ----------------------------------------QVV  161 (344)
T ss_dssp             EECCSS-CEEEEEECTTSSEEEEEETTSCEEEEETTT----------------------------------------TEE
T ss_pred             ccCCCC-CEEEEEECCCCCEEEEEeCCCeEEEEECCC----------------------------------------CcE
Confidence            458999 899999999999999999999999999974                                        345


Q ss_pred             ccccccccCCeEEEEEecCCCcEEEEEcCCCeEEEEEcCCCCcceEEEeeccCCceeEEEeccCCCCeEEEEcCCCcEEE
Q 021657           84 RGIYNGHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRM  163 (309)
Q Consensus        84 ~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i  163 (309)
                      +..+.+|...|++++|+|++..+|++|+.|++|++||+++++.........+...+.+++|+|.++++|++|+.||.|++
T Consensus       162 ~~~~~~h~~~V~~~~~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~l~sg~~dg~v~~  241 (344)
T 4gqb_B          162 LSSYRAHAAQVTCVAASPHKDSVFLSCSEDNRILLWDTRCPKPASQIGCSAPGYLPTSLAWHPQQSEVFVFGDENGTVSL  241 (344)
T ss_dssp             EEEECCCSSCEEEEEECSSCTTEEEEEETTSCEEEEETTSSSCEEECC----CCCEEEEEECSSCTTEEEEEETTSEEEE
T ss_pred             EEEEcCcCCceEEEEecCCCCCceeeeccccccccccccccceeeeeecceeeccceeeeecCCCCcceEEeccCCcEEE
Confidence            66778899999999999998778999999999999999988732222234566679999999966788999999999999


Q ss_pred             EecCCCCCCCCCCceeeeccCCCCeeEEEEecCCCcEEEEecCCCcEEEEeCCcccccccCCCCCcCCCCceeeeecCCC
Q 021657          164 FDRRNLTSNGVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHR  243 (309)
Q Consensus       164 ~d~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  243 (309)
                      ||+++      ++++..+.+|...|++++|+|++..+|++|+.|++|+|||++.               . .+..+.+|.
T Consensus       242 wd~~~------~~~~~~~~~h~~~v~~v~fsp~g~~~lasgs~D~~i~vwd~~~---------------~-~~~~~~~H~  299 (344)
T 4gqb_B          242 VDTKS------TSCVLSSAVHSQCVTGLVFSPHSVPFLASLSEDCSLAVLDSSL---------------S-ELFRSQAHR  299 (344)
T ss_dssp             EESCC--------CCEEEECCSSCEEEEEECSSSSCCEEEEETTSCEEEECTTC---------------C-EEEEECCCS
T ss_pred             EECCC------CcEEEEEcCCCCCEEEEEEccCCCeEEEEEeCCCeEEEEECCC---------------C-cEEEEcCCC
Confidence            99999      8899999999999999999999976788999999999999986               2 234568999


Q ss_pred             cceeeEEEccCCCeEEEEecCCCCCCCCCCeEEEEEccc
Q 021657          244 DKVVDFHWNASDPWTVVSVSDDCDSTGGGGTLQIWRMSD  282 (309)
Q Consensus       244 ~~v~~~~~~~~~~~~~~s~s~d~~s~~~dg~v~vw~~~~  282 (309)
                      ..|++++|+|++..+++++|.|       ++|++|++..
T Consensus       300 ~~V~~v~~sp~~~~llas~s~D-------~~v~~w~v~~  331 (344)
T 4gqb_B          300 DFVRDATWSPLNHSLLTTVGWD-------HQVVHHVVPT  331 (344)
T ss_dssp             SCEEEEEECSSSTTEEEEEETT-------SCEEEEECCC
T ss_pred             CCEEEEEEeCCCCeEEEEEcCC-------CeEEEEECCC
Confidence            9999999999999888877766       9999999983

>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}

Probab=100.00  E-value=1.9e-43  Score=287.87  Aligned_cols=275  Identities=19%  Similarity=0.340  Sum_probs=210.2

Q ss_pred             cccCCCCCcceEEEEECCCCCEEEEecCCCcEEEEeCCccccccccCC----ccccccCCCCceeecCCCCCCCCcccCC
Q 021657            2 EILTGHQDNAEFALAMCPTEPYVLSGGKDKSVVLWSIQDHITSSATDP----ATAKSAGSSGSIIKQSPKPGDGNDKAAD   77 (309)
Q Consensus         2 ~~l~~H~~~~V~~~~~~~~~~~l~t~~~dg~i~vwd~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~   77 (309)
                      ++|+||.+ .|++++|+|++++|+||+.||+|+|||+.++........    ..........  ..+..+..++.+.+|+
T Consensus        60 ~~l~gH~~-~V~~~~~sp~~~~l~s~s~D~~v~iWd~~~~~~~~~~~~h~~~v~~~~~s~~g--~~las~~~d~~v~iw~  136 (380)
T 3iz6_a           60 RTLQGHSG-KVYSLDWTPEKNWIVSASQDGRLIVWNALTSQKTHAIKLHCPWVMECAFAPNG--QSVACGGLDSACSIFN  136 (380)
T ss_dssp             EEECCCSS-CEEEEEECTTSSCEEEEETTSEEEEEETTTTEEEEEEECCCTTCCCCEECTTS--SEEEECCSSSCCEEEE
T ss_pred             eccccccc-EEEEEEEcCCCCEEEEEeCCCeEEEEECCCCccceEEecCCCCEEEEEECCCC--CEEEEeeCCCcEEEEE
Confidence            56899999 899999999999999999999999999987643322211    1111111222  2334456778888887


Q ss_pred             CCCc-------CcccccccccCCeEEEEEecCCCcEEEEEcCCCeEEEEEcCCCCcceEEEe-----eccCCceeEEEec
Q 021657           78 GPSV-------GPRGIYNGHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPVIKVE-----KAHDADLHCVDWN  145 (309)
Q Consensus        78 ~~~~-------~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~-----~~~~~~v~~~~~~  145 (309)
                      ....       .....+.+|.+.|.++.|.|+++..|++|+.|++|++||+++++  ....+     .+|...|.+++|+
T Consensus       137 ~~~~~~~~~~~~~~~~~~gh~~~v~~~~~~~~~~~~l~s~s~D~~i~~wd~~~~~--~~~~~~~~~~~~h~~~v~~~~~~  214 (380)
T 3iz6_a          137 LSSQADRDGNMPVSRVLTGHKGYASSCQYVPDQETRLITGSGDQTCVLWDVTTGQ--RISIFGSEFPSGHTADVLSLSIN  214 (380)
T ss_dssp             CCCCSSCCCSSTTCCBCCCCSSCCCCCBCCSSSSSCEEEECTTSCEEEECTTTCC--EEEEECCCSSSSCCSCEEEEEEC
T ss_pred             CCCCccccCCccceeeccCCCcceEEEEEecCCCCEEEEECCCCcEEEEEcCCCc--EEEEeecccCCCCccCeEEEEee
Confidence            6542       23456789999999999999876789999999999999999887  44444     5788999999998


Q ss_pred             cCCCCeEEEEcCCCcEEEEecCCCCCCCCCCceeeeccCCCCeeEEEEecCCCcEEEEecCCCcEEEEeCCcccccccCC
Q 021657          146 PLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQG  225 (309)
Q Consensus       146 ~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~dg~i~iwd~~~~~~~~~~~  225 (309)
                      |.++++|++|+.|+.|++||++..     ...+..+.+|...|++++|+|++.+ |++|+.|+.|++||++........ 
T Consensus       215 ~~~~~~l~sgs~D~~v~~wd~~~~-----~~~~~~~~~h~~~v~~v~~~p~~~~-l~s~s~D~~i~lwd~~~~~~~~~~-  287 (380)
T 3iz6_a          215 SLNANMFISGSCDTTVRLWDLRIT-----SRAVRTYHGHEGDINSVKFFPDGQR-FGTGSDDGTCRLFDMRTGHQLQVY-  287 (380)
T ss_dssp             SSSCCEEEEEETTSCEEEEETTTT-----CCCCEEECCCSSCCCEEEECTTSSE-EEEECSSSCEEEEETTTTEEEEEE-
T ss_pred             cCCCCEEEEEECCCeEEEEECCCC-----CcceEEECCcCCCeEEEEEecCCCe-EEEEcCCCeEEEEECCCCcEEEEe-
Confidence            768899999999999999999852     5778889999999999999999996 679999999999999873221100 


Q ss_pred             CCCcCCCCceeeeecCCCcceeeEEEccCCCeEEEEecCCCCCCCCCCeEEEEEccccccCChhhHhHhh----hcccce
Q 021657          226 PRTTNYPAGLFFQHAGHRDKVVDFHWNASDPWTVVSVSDDCDSTGGGGTLQIWRMSDLIYRPQDEVLAEL----EKFKAH  301 (309)
Q Consensus       226 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~s~d~~s~~~dg~v~vw~~~~~~~~~~~~~~~~~----~~h~~~  301 (309)
                      ...       ......+...|.+++|+|++.+++        +|+.||.|++||+.      .++.+..+    .+|.+.
T Consensus       288 ~~~-------~~~~~~~~~~v~~~~~s~~g~~l~--------~g~~dg~i~vwd~~------~~~~~~~~~~~~~~h~~~  346 (380)
T 3iz6_a          288 NRE-------PDRNDNELPIVTSVAFSISGRLLF--------AGYSNGDCYVWDTL------LAEMVLNLGTLQNSHEGR  346 (380)
T ss_dssp             CCC-------CSSSCCSSCSCSEEEECSSSSEEE--------EECTTSCEEEEETT------TCCEEEEECCSCSSCCCC
T ss_pred             ccc-------ccccccccCceEEEEECCCCCEEE--------EEECCCCEEEEECC------CCceEEEEecccCCCCCc
Confidence            000       000112334589999999988766        55556999999997      44444444    689999


Q ss_pred             EEEeeeCC
Q 021657          302 VISCTSKP  309 (309)
Q Consensus       302 v~~~~~~P  309 (309)
                      |.+++|+|
T Consensus       347 v~~l~~s~  354 (380)
T 3iz6_a          347 ISCLGLSS  354 (380)
T ss_dssp             CCEEEECS
T ss_pred             eEEEEECC
Confidence            99999987

>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}

Probab=100.00  E-value=2.5e-43  Score=283.49  Aligned_cols=292  Identities=16%  Similarity=0.273  Sum_probs=214.3

Q ss_pred             CcccCCCCCcceEEEEECCCCCEEEEecCCCcEEEEeCCcccccc-------ccCCccccccCCCCceeecCCCCCCCCc
Q 021657            1 MEILTGHQDNAEFALAMCPTEPYVLSGGKDKSVVLWSIQDHITSS-------ATDPATAKSAGSSGSIIKQSPKPGDGND   73 (309)
Q Consensus         1 l~~l~~H~~~~V~~~~~~~~~~~l~t~~~dg~i~vwd~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~   73 (309)
                      +++|++|.++.|++++|+|+|++|++|+.|++|+|||++++....       ..............  ..+..+..++.+
T Consensus         8 ~~~~~~h~~~~v~~l~~sp~g~~las~~~D~~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~sp~g--~~l~s~s~D~~v   85 (345)
T 3fm0_A            8 LGRVPAHPDSRCWFLAWNPAGTLLASCGGDRRIRIWGTEGDSWICKSVLSEGHQRTVRKVAWSPCG--NYLASASFDATT   85 (345)
T ss_dssp             EEEECCSTTSCEEEEEECTTSSCEEEEETTSCEEEEEEETTEEEEEEEECSSCSSCEEEEEECTTS--SEEEEEETTSCE
T ss_pred             eeeecCCCCCcEEEEEECCCCCEEEEEcCCCeEEEEEcCCCcceeeeeeccccCCcEEEEEECCCC--CEEEEEECCCcE
Confidence            357899988789999999999999999999999999998653111       11111111112121  223344567888


Q ss_pred             ccCCCCCc--CcccccccccCCeEEEEEecCCCcEEEEEcCCCeEEEEEcCCCCc-ceEEEeeccCCceeEEEeccCCCC
Q 021657           74 KAADGPSV--GPRGIYNGHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTS-PVIKVEKAHDADLHCVDWNPLDDN  150 (309)
Q Consensus        74 ~~~~~~~~--~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~-~~~~~~~~~~~~v~~~~~~~~~~~  150 (309)
                      .+|+....  +.+..+.+|...|.+++|+|++ .+|++|+.|+.|++||++.+.. .....+..|...|.+++|+| ++.
T Consensus        86 ~iw~~~~~~~~~~~~~~~h~~~v~~v~~sp~~-~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~h~~~v~~~~~~p-~~~  163 (345)
T 3fm0_A           86 CIWKKNQDDFECVTTLEGHENEVKSVAWAPSG-NLLATCSRDKSVWVWEVDEEDEYECVSVLNSHTQDVKHVVWHP-SQE  163 (345)
T ss_dssp             EEEEECCC-EEEEEEECCCSSCEEEEEECTTS-SEEEEEETTSCEEEEEECTTSCEEEEEEECCCCSCEEEEEECS-SSS
T ss_pred             EEEEccCCCeEEEEEccCCCCCceEEEEeCCC-CEEEEEECCCeEEEEECCCCCCeEEEEEecCcCCCeEEEEECC-CCC
Confidence            99987654  4567889999999999999998 8899999999999999987642 24556778999999999999 999


Q ss_pred             eEEEEcCCCcEEEEecCCCCCCCCCCceeeeccCCCCeeEEEEecCCCcEEEEecCCCcEEEEeCCcccccccCCCCCcC
Q 021657          151 LILTGSADNSVRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTN  230 (309)
Q Consensus       151 ~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~dg~i~iwd~~~~~~~~~~~~~~~~  230 (309)
                      +|++++.|+.|++||.+...    ......+.+|...|++++|+|++++ |++++.|+.|++||....+...........
T Consensus       164 ~l~s~s~d~~i~~w~~~~~~----~~~~~~~~~h~~~v~~l~~sp~g~~-l~s~s~D~~v~iW~~~~~~~~~~~~~~~~~  238 (345)
T 3fm0_A          164 LLASASYDDTVKLYREEEDD----WVCCATLEGHESTVWSLAFDPSGQR-LASCSDDRTVRIWRQYLPGNEQGVACSGSD  238 (345)
T ss_dssp             CEEEEETTSCEEEEEEETTE----EEEEEEECCCSSCEEEEEECTTSSE-EEEEETTSCEEEEEEECTTCTTCCCCC---
T ss_pred             EEEEEeCCCcEEEEEecCCC----EEEEEEecCCCCceEEEEECCCCCE-EEEEeCCCeEEEeccccCCCCccceeeccC
Confidence            99999999999999998721    1345788899999999999999996 679999999999997653322111111111


Q ss_pred             CCCceeeeecC-CCcceeeEEEccCCCeEEEEecCCCCCCCCCCeEEEEEccccccCCh--hh-HhHhhhcccceEEEee
Q 021657          231 YPAGLFFQHAG-HRDKVVDFHWNASDPWTVVSVSDDCDSTGGGGTLQIWRMSDLIYRPQ--DE-VLAELEKFKAHVISCT  306 (309)
Q Consensus       231 ~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~~s~s~d~~s~~~dg~v~vw~~~~~~~~~~--~~-~~~~~~~h~~~v~~~~  306 (309)
                      ....++..+.+ |...|.+++|+|++..++        +++.|+.|++|+.........  .. ......+|.+.|.+++
T Consensus       239 ~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~--------s~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~  310 (345)
T 3fm0_A          239 PSWKCICTLSGFHSRTIYDIAWCQLTGALA--------TACGDDAIRVFQEDPNSDPQQPTFSLTAHLHQAHSQDVNCVA  310 (345)
T ss_dssp             CEEEEEEEECSSCSSCEEEEEECTTTCCEE--------EEETTSCEEEEEECTTSCTTSCCEEEEEEETTSSSSCEEEEE
T ss_pred             CccceeEEecCCCCCcEEEEEEecCCCEEE--------EEeCCCeEEEEEeCCCCCcceeeEEEEeeecccccCcEeEeE
Confidence            11223444444 888999999999888655        444459999999874221100  00 1123468999999999


Q ss_pred             eCC
Q 021657          307 SKP  309 (309)
Q Consensus       307 ~~P  309 (309)
                      |+|
T Consensus       311 ~~p  313 (345)
T 3fm0_A          311 WNP  313 (345)
T ss_dssp             ECS
T ss_pred             EeC
Confidence            998

>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}

Probab=100.00  E-value=2e-42  Score=275.14  Aligned_cols=242  Identities=19%  Similarity=0.336  Sum_probs=205.0

Q ss_pred             ccCCCCCcceEEEEECCCCCEEEEecCCCcEEEEeCCccccccccCCc----cccccCCCCceeecCCCCCCCCcccCCC
Q 021657            3 ILTGHQDNAEFALAMCPTEPYVLSGGKDKSVVLWSIQDHITSSATDPA----TAKSAGSSGSIIKQSPKPGDGNDKAADG   78 (309)
Q Consensus         3 ~l~~H~~~~V~~~~~~~~~~~l~t~~~dg~i~vwd~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~   78 (309)
                      .++||.. .|.+++|+|++.++++++.|++|++||+.++.........    .........  ..+..+..++.+.+|+.
T Consensus        75 ~l~gh~~-~v~~~~~~~~~~~l~s~s~D~~i~lWd~~~~~~~~~~~~~~~~~~~~~~spdg--~~l~~g~~dg~v~i~~~  151 (321)
T 3ow8_A           75 SLEGHQL-GVVSVDISHTLPIAASSSLDAHIRLWDLENGKQIKSIDAGPVDAWTLAFSPDS--QYLATGTHVGKVNIFGV  151 (321)
T ss_dssp             EECCCSS-CEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEEEEECCTTCCCCEEECTTS--SEEEEECTTSEEEEEET
T ss_pred             eeccCCC-CEEEEEECCCCCEEEEEeCCCcEEEEECCCCCEEEEEeCCCccEEEEEECCCC--CEEEEEcCCCcEEEEEc
Confidence            5789999 8999999999999999999999999999887443322111    111111111  12334456788999999


Q ss_pred             CCcCcccccccccCCeEEEEEecCCCcEEEEEcCCCeEEEEEcCCCCcceEEEeeccCCceeEEEeccCCCCeEEEEcCC
Q 021657           79 PSVGPRGIYNGHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSAD  158 (309)
Q Consensus        79 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d  158 (309)
                      .+.+....+..|...|.+++|+|++ .+|++|+.||.|++||+++++  ....+.+|..+|.+++|+| ++++|++|+.|
T Consensus       152 ~~~~~~~~~~~~~~~v~~~~~spdg-~~lasg~~dg~i~iwd~~~~~--~~~~~~~h~~~v~~l~~sp-d~~~l~s~s~d  227 (321)
T 3ow8_A          152 ESGKKEYSLDTRGKFILSIAYSPDG-KYLASGAIDGIINIFDIATGK--LLHTLEGHAMPIRSLTFSP-DSQLLVTASDD  227 (321)
T ss_dssp             TTCSEEEEEECSSSCEEEEEECTTS-SEEEEEETTSCEEEEETTTTE--EEEEECCCSSCCCEEEECT-TSCEEEEECTT
T ss_pred             CCCceeEEecCCCceEEEEEECCCC-CEEEEEcCCCeEEEEECCCCc--EEEEEcccCCceeEEEEcC-CCCEEEEEcCC
Confidence            9999888899999999999999998 889999999999999998887  6778889999999999999 99999999999


Q ss_pred             CcEEEEecCCCCCCCCCCceeeeccCCCCeeEEEEecCCCcEEEEecCCCcEEEEeCCcccccccCCCCCcCCCCceeee
Q 021657          159 NSVRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQ  238 (309)
Q Consensus       159 g~i~i~d~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~  238 (309)
                      +.|++||+++      .+.+..+.+|...|.+++|+|++++ |++++.|+.|++||++.               ..++..
T Consensus       228 g~i~iwd~~~------~~~~~~~~~h~~~v~~~~~sp~~~~-l~s~s~D~~v~iwd~~~---------------~~~~~~  285 (321)
T 3ow8_A          228 GYIKIYDVQH------ANLAGTLSGHASWVLNVAFCPDDTH-FVSSSSDKSVKVWDVGT---------------RTCVHT  285 (321)
T ss_dssp             SCEEEEETTT------CCEEEEECCCSSCEEEEEECTTSSE-EEEEETTSCEEEEETTT---------------TEEEEE
T ss_pred             CeEEEEECCC------cceeEEEcCCCCceEEEEECCCCCE-EEEEeCCCcEEEEeCCC---------------CEEEEE
Confidence            9999999998      8888999999999999999999996 67999999999999987               456777


Q ss_pred             ecCCCcceeeEEEccCCCeEEEEecCCCCCCCCCCeEEEEEcc
Q 021657          239 HAGHRDKVVDFHWNASDPWTVVSVSDDCDSTGGGGTLQIWRMS  281 (309)
Q Consensus       239 ~~~~~~~v~~~~~~~~~~~~~~s~s~d~~s~~~dg~v~vw~~~  281 (309)
                      +.+|...|.+++|+|++..++        +++.||.|++||+.
T Consensus       286 ~~~h~~~v~~v~~s~~g~~l~--------s~~~d~~i~vwd~p  320 (321)
T 3ow8_A          286 FFDHQDQVWGVKYNGNGSKIV--------SVGDDQEIHIYDCP  320 (321)
T ss_dssp             ECCCSSCEEEEEECTTSSEEE--------EEETTCCEEEEECC
T ss_pred             EcCCCCcEEEEEECCCCCEEE--------EEeCCCeEEEEeCC
Confidence            889999999999999888655        44455999999974

>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A

Probab=100.00  E-value=1.2e-41  Score=268.11  Aligned_cols=244  Identities=22%  Similarity=0.341  Sum_probs=193.5

Q ss_pred             cccCCCCCcceEEEEECCCCCEEEEecCCCcEEEEeCCccccccccCCccccccCCCCceeecCCCCCCCCcccCCCCCc
Q 021657            2 EILTGHQDNAEFALAMCPTEPYVLSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSV   81 (309)
Q Consensus         2 ~~l~~H~~~~V~~~~~~~~~~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (309)
                      ..+.+|.+ .|++++|+|+|++|++|+.|++|+|||+...                                      ..
T Consensus         3 ~~~~~h~~-~V~~~~~s~~g~~las~s~D~~v~iw~~~~~--------------------------------------~~   43 (297)
T 2pm7_B            3 VIANAHNE-MIHDAVMDYYGKRMATCSSDKTIKIFEVEGE--------------------------------------TH   43 (297)
T ss_dssp             EECCSCSS-CEEEEEECTTSSEEEEEETTSCEEEEEBCSS--------------------------------------CB
T ss_pred             eeccCCcC-ceEEEEECCCCCEEEEEeCCCEEEEEecCCC--------------------------------------Cc
Confidence            46889999 8999999999999999999999999998631                                      22


Q ss_pred             CcccccccccCCeEEEEEecC--CCcEEEEEcCCCeEEEEEcCCCCcceEEEeeccCCceeEEEeccCC--CCeEEEEcC
Q 021657           82 GPRGIYNGHEDTVEDVTFCPS--SAQEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLD--DNLILTGSA  157 (309)
Q Consensus        82 ~~~~~~~~~~~~v~~~~~~~~--~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~--~~~l~~~~~  157 (309)
                      +.+..+.+|.++|++++|+++  + .+|++|+.|++|++||+++++......+..|...|.+++|+| +  +.+|++++.
T Consensus        44 ~~~~~l~gH~~~V~~v~~s~~~~g-~~l~s~s~D~~v~iWd~~~~~~~~~~~~~~h~~~v~~v~~~p-~~~g~~l~s~s~  121 (297)
T 2pm7_B           44 KLIDTLTGHEGPVWRVDWAHPKFG-TILASCSYDGKVMIWKEENGRWSQIAVHAVHSASVNSVQWAP-HEYGPMLLVASS  121 (297)
T ss_dssp             CCCEEECCCSSCEEEEEECCGGGC-SEEEEEETTTEEEEEEBSSSCBCCCEEECCCSSCEEEEEECC-GGGCSEEEEEET
T ss_pred             EEEEEEccccCCeEEEEecCCCcC-CEEEEEcCCCEEEEEEcCCCceEEEEEeecCCCceeEEEeCc-CCCCcEEEEEEC
Confidence            345678899999999999864  5 789999999999999998775435566778999999999999 6  789999999


Q ss_pred             CCcEEEEecCCCCCCCCCCceeeeccCCCCeeEEEEecCC------------CcEEEEecCCCcEEEEeCCcccccccCC
Q 021657          158 DNSVRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWSPDK------------SSVFGSSAEDGLLNIWDYEKVGKKVEQG  225 (309)
Q Consensus       158 dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~------------~~l~~~~~~dg~i~iwd~~~~~~~~~~~  225 (309)
                      |+.|++||++...    ......+.+|...|++++|+|++            ..+|++|+.|+.|++||++.....    
T Consensus       122 d~~v~~wd~~~~~----~~~~~~~~~h~~~v~~~~~~p~~~~~~~~~~~~~~~~~l~sgs~D~~v~lwd~~~~~~~----  193 (297)
T 2pm7_B          122 DGKVSVVEFKENG----TTSPIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQT----  193 (297)
T ss_dssp             TSEEEEEEBCSSS----CBCCEEEECCSSCEEEEEECCCC------------CCEEEEEETTSCEEEEEEETTTTE----
T ss_pred             CCcEEEEEecCCC----ceeeeeeecccCccceEeecCCcccccccCCCCCCcceEEEEcCCCcEEEEEEcCCCce----
Confidence            9999999998731    11245677899999999999973            125789999999999999862211    


Q ss_pred             CCCcCCCCceeeeecCCCcceeeEEEccCC--CeEEEEecCCCCCCCCCCeEEEEEccccccCChhhHhHhhhcccceEE
Q 021657          226 PRTTNYPAGLFFQHAGHRDKVVDFHWNASD--PWTVVSVSDDCDSTGGGGTLQIWRMSDLIYRPQDEVLAELEKFKAHVI  303 (309)
Q Consensus       226 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~--~~~~~s~s~d~~s~~~dg~v~vw~~~~~~~~~~~~~~~~~~~h~~~v~  303 (309)
                             ......+.+|...|.+++|+|++  ..+++++|.|       ++|++||++....... ..+.....|...|.
T Consensus       194 -------~~~~~~l~~H~~~V~~v~~sp~~~~~~~las~s~D-------~~v~iWd~~~~~~~~~-~~~~~~~~~~~~v~  258 (297)
T 2pm7_B          194 -------YVLESTLEGHSDWVRDVAWSPTVLLRSYMASVSQD-------RTCIIWTQDNEQGPWK-KTLLKEEKFPDVLW  258 (297)
T ss_dssp             -------EEEEEEECCCSSCEEEEEECCCCSSSEEEEEEETT-------SCEEEEEESSTTSCCE-EEESSSSCCSSCEE
T ss_pred             -------EEEEEEecCCCCceEEEEECCCCCCceEEEEEECC-------CcEEEEEeCCCCCccc-eeeeecccCCCcEE
Confidence                   12455778999999999999986  4677766666       9999999984210000 01111256888999


Q ss_pred             EeeeCC
Q 021657          304 SCTSKP  309 (309)
Q Consensus       304 ~~~~~P  309 (309)
                      +++|+|
T Consensus       259 ~~~~s~  264 (297)
T 2pm7_B          259 RASWSL  264 (297)
T ss_dssp             EEEECS
T ss_pred             EEEECC
Confidence            999997

>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*

Probab=100.00  E-value=6.3e-42  Score=272.34  Aligned_cols=231  Identities=22%  Similarity=0.398  Sum_probs=196.3

Q ss_pred             cccCCCCCcceEEEEECCCC-CEEEEecCCCcEEEEeCCccccccccCCccccccCCCCceeecCCCCCCCCcccCCCCC
Q 021657            2 EILTGHQDNAEFALAMCPTE-PYVLSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPS   80 (309)
Q Consensus         2 ~~l~~H~~~~V~~~~~~~~~-~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (309)
                      .+|+||.+ .|++++|+|++ ++|+||+.|++|++|++.....                                   ..
T Consensus        11 ~~l~gH~~-~V~~l~~~~~~~~~l~s~s~D~~v~~W~~~~~~~-----------------------------------~~   54 (319)
T 3frx_A           11 GTLEGHNG-WVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQ-----------------------------------KF   54 (319)
T ss_dssp             EEECCCSS-CEEEEEECSSCTTEEEEEETTSEEEEEEEEEETT-----------------------------------EE
T ss_pred             EEEccccc-eEEEEEccCCCccEEEEecCCccEEEecCCCCCc-----------------------------------cc
Confidence            47899999 89999999965 8999999999999999864211                                   01


Q ss_pred             cCcccccccccCCeEEEEEecCCCcEEEEEcCCCeEEEEEcCCCCcceEEEeeccCCceeEEEeccCCCCeEEEEcCCCc
Q 021657           81 VGPRGIYNGHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNS  160 (309)
Q Consensus        81 ~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~  160 (309)
                      ..++..+.+|...|.+++|+|++ .+|++|+.|++|++||+.+++  ....+.+|...|.+++|+| ++.+|++|+.|+.
T Consensus        55 ~~~~~~~~~h~~~v~~~~~s~dg-~~l~s~s~D~~v~~wd~~~~~--~~~~~~~h~~~v~~~~~~~-~~~~l~s~s~D~~  130 (319)
T 3frx_A           55 GVPVRSFKGHSHIVQDCTLTADG-AYALSASWDKTLRLWDVATGE--TYQRFVGHKSDVMSVDIDK-KASMIISGSRDKT  130 (319)
T ss_dssp             EEEEEEEECCSSCEEEEEECTTS-SEEEEEETTSEEEEEETTTTE--EEEEEECCSSCEEEEEECT-TSCEEEEEETTSC
T ss_pred             cccceEEeCCcccEEEEEECCCC-CEEEEEeCCCEEEEEECCCCC--eeEEEccCCCcEEEEEEcC-CCCEEEEEeCCCe
Confidence            22456788999999999999998 889999999999999999887  6788889999999999999 9999999999999


Q ss_pred             EEEEecCCCCCCCCCCceeeeccCCCCeeEEEEecCCC-----cEEEEecCCCcEEEEeCCcccccccCCCCCcCCCCce
Q 021657          161 VRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWSPDKS-----SVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGL  235 (309)
Q Consensus       161 i~i~d~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-----~l~~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~  235 (309)
                      |++||++       +..+..+.+|...|.+++|.|...     .++++++.|+.|++||++.               ...
T Consensus       131 i~vwd~~-------~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~---------------~~~  188 (319)
T 3frx_A          131 IKVWTIK-------GQCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQ---------------FQI  188 (319)
T ss_dssp             EEEEETT-------SCEEEEECCCSSCEEEEEECCC------CCEEEEEETTSCEEEEETTT---------------TEE
T ss_pred             EEEEECC-------CCeEEEEeccCCcEEEEEEccCCCCCCCccEEEEEeCCCEEEEEECCc---------------chh
Confidence            9999997       467788889999999999998543     2567999999999999987               345


Q ss_pred             eeeecCCCcceeeEEEccCCCeEEEEecCCCCCCCCCCeEEEEEccccccCChhhHhHhhhcccceEEEeeeCC
Q 021657          236 FFQHAGHRDKVVDFHWNASDPWTVVSVSDDCDSTGGGGTLQIWRMSDLIYRPQDEVLAELEKFKAHVISCTSKP  309 (309)
Q Consensus       236 ~~~~~~~~~~v~~~~~~~~~~~~~~s~s~d~~s~~~dg~v~vw~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~P  309 (309)
                      ...+.+|...|.+++|+|++.+++        +|+.||.|++||+.      ..+++.++.. ...|.+++|+|
T Consensus       189 ~~~~~~h~~~v~~~~~sp~g~~l~--------s~~~dg~i~iwd~~------~~~~~~~~~~-~~~v~~~~~sp  247 (319)
T 3frx_A          189 EADFIGHNSNINTLTASPDGTLIA--------SAGKDGEIMLWNLA------AKKAMYTLSA-QDEVFSLAFSP  247 (319)
T ss_dssp             EEEECCCCSCEEEEEECTTSSEEE--------EEETTCEEEEEETT------TTEEEEEEEC-CSCEEEEEECS
T ss_pred             heeecCCCCcEEEEEEcCCCCEEE--------EEeCCCeEEEEECC------CCcEEEEecC-CCcEEEEEEcC
Confidence            567789999999999999887655        45555999999999      6667777764 56899999987

>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...

Probab=100.00  E-value=1.6e-41  Score=269.56  Aligned_cols=266  Identities=23%  Similarity=0.350  Sum_probs=213.8

Q ss_pred             cccCCCCCcceEEEEECCCCCEEEEecCCCcEEEEeCCccccccccCC----ccccccCCCCceeecCCCCCCCCcccCC
Q 021657            2 EILTGHQDNAEFALAMCPTEPYVLSGGKDKSVVLWSIQDHITSSATDP----ATAKSAGSSGSIIKQSPKPGDGNDKAAD   77 (309)
Q Consensus         2 ~~l~~H~~~~V~~~~~~~~~~~l~t~~~dg~i~vwd~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~   77 (309)
                      .+|.+|.+ .|++++|+|++++|++|+.||.|++|++.++........    ..........  ..+..+..++.+.+|+
T Consensus        17 ~~~~gh~~-~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~h~~~v~~~~~~~~~--~~l~s~~~d~~i~vwd   93 (312)
T 4ery_A           17 FTLAGHTK-AVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDS--NLLVSASDDKTLKIWD   93 (312)
T ss_dssp             EEECCCSS-CEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTS--SEEEEEETTSEEEEEE
T ss_pred             EEEcccCC-cEEEEEECCCCCEEEEeeCCCeEEEEeCCCcccchhhccCCCceEEEEEcCCC--CEEEEECCCCEEEEEE
Confidence            35789999 899999999999999999999999999987643322211    1111111111  2233345678999999


Q ss_pred             CCCcCcccccccccCCeEEEEEecCCCcEEEEEcCCCeEEEEEcCCCCcceEEEeeccCCceeEEEeccCCCCeEEEEcC
Q 021657           78 GPSVGPRGIYNGHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSA  157 (309)
Q Consensus        78 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~  157 (309)
                      ..+.+.+..+.+|...|.++.|+|++ .+|++|+.|+.|++||+++++  ....+..|..+|.+++|+| ++.+|++++.
T Consensus        94 ~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~s~~~d~~i~iwd~~~~~--~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~  169 (312)
T 4ery_A           94 VSSGKCLKTLKGHSNYVFCCNFNPQS-NLIVSGSFDESVRIWDVKTGK--CLKTLPAHSDPVSAVHFNR-DGSLIVSSSY  169 (312)
T ss_dssp             TTTCCEEEEEECCSSCEEEEEECSSS-SEEEEEETTSCEEEEETTTCC--EEEEECCCSSCEEEEEECT-TSSEEEEEET
T ss_pred             CCCCcEEEEEcCCCCCEEEEEEcCCC-CEEEEEeCCCcEEEEECCCCE--EEEEecCCCCcEEEEEEcC-CCCEEEEEeC
Confidence            99999999999999999999999998 889999999999999999887  6778888999999999999 9999999999


Q ss_pred             CCcEEEEecCCCCCCCCCCceeeec-cCCCCeeEEEEecCCCcEEEEecCCCcEEEEeCCcccccccCCCCCcCCCCcee
Q 021657          158 DNSVRMFDRRNLTSNGVGSPINKFE-GHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLF  236 (309)
Q Consensus       158 dg~i~i~d~~~~~~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~l~~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~  236 (309)
                      ||.|++||+++      ++.+..+. .+...+..++|+|++++ +++++.|+.|++||++.               ...+
T Consensus       170 d~~i~~wd~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~-l~~~~~d~~i~iwd~~~---------------~~~~  227 (312)
T 4ery_A          170 DGLCRIWDTAS------GQCLKTLIDDDNPPVSFVKFSPNGKY-ILAATLDNTLKLWDYSK---------------GKCL  227 (312)
T ss_dssp             TSCEEEEETTT------CCEEEEECCSSCCCEEEEEECTTSSE-EEEEETTTEEEEEETTT---------------TEEE
T ss_pred             CCcEEEEECCC------CceeeEEeccCCCceEEEEECCCCCE-EEEEcCCCeEEEEECCC---------------CcEE
Confidence            99999999998      77766654 45678999999999996 56899999999999987               3345


Q ss_pred             eeecCCCcce--eeEEEccCCCeEEEEecCCCCCCCCCCeEEEEEccccccCChhhHhHhhhcccceEEEeeeCC
Q 021657          237 FQHAGHRDKV--VDFHWNASDPWTVVSVSDDCDSTGGGGTLQIWRMSDLIYRPQDEVLAELEKFKAHVISCTSKP  309 (309)
Q Consensus       237 ~~~~~~~~~v--~~~~~~~~~~~~~~s~s~d~~s~~~dg~v~vw~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~P  309 (309)
                      ..+.+|...+  ....+++.+..+++       +|+.||.|++||+.      +++.+.++.+|.+.|.+++|+|
T Consensus       228 ~~~~~~~~~~~~~~~~~~~~~~~~l~-------sg~~dg~i~vwd~~------~~~~~~~~~~h~~~v~~~~~~p  289 (312)
T 4ery_A          228 KTYTGHKNEKYCIFANFSVTGGKWIV-------SGSEDNLVYIWNLQ------TKEIVQKLQGHTDVVISTACHP  289 (312)
T ss_dssp             EEECSSCCSSSCCCEEEECSSSCEEE-------ECCTTSCEEEEETT------TCCEEEEECCCSSCEEEEEECS
T ss_pred             EEEEecCCceEEEEEEEEeCCCcEEE-------EECCCCEEEEEECC------CchhhhhhhccCCcEEEEeecC
Confidence            5566665543  33445544444555       45555999999998      6778889999999999999998

>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A

Probab=100.00  E-value=2.1e-41  Score=291.81  Aligned_cols=281  Identities=19%  Similarity=0.290  Sum_probs=211.2

Q ss_pred             cccCCCCCcceEEEEECCCCCEEEEecCCCcEEEEeCCcccccc------ccCCccccccCCCCceeecCCC--CCCCCc
Q 021657            2 EILTGHQDNAEFALAMCPTEPYVLSGGKDKSVVLWSIQDHITSS------ATDPATAKSAGSSGSIIKQSPK--PGDGND   73 (309)
Q Consensus         2 ~~l~~H~~~~V~~~~~~~~~~~l~t~~~dg~i~vwd~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~--~~~~~~   73 (309)
                      +.|.+|.+ .|++++|+|+|++||+|+.||+|+|||+.++....      ......................  ...+.+
T Consensus        53 ~~~~~h~~-~v~~~~~spdg~~lasg~~d~~v~lWd~~~~~~~~~~~~~~~~~~v~~v~fs~dg~~l~~~~~~~~~~~~v  131 (611)
T 1nr0_A           53 EIYTEHSH-QTTVAKTSPSGYYCASGDVHGNVRIWDTTQTTHILKTTIPVFSGPVKDISWDSESKRIAAVGEGRERFGHV  131 (611)
T ss_dssp             EEECCCSS-CEEEEEECTTSSEEEEEETTSEEEEEESSSTTCCEEEEEECSSSCEEEEEECTTSCEEEEEECCSSCSEEE
T ss_pred             eEecCCCC-ceEEEEECCCCcEEEEEeCCCCEEEeECCCCcceeeEeecccCCceEEEEECCCCCEEEEEECCCCceeEE
Confidence            56889999 89999999999999999999999999996542211      1111122222222222222111  123467


Q ss_pred             ccCCCCCcCcccccccccCCeEEEEEecCCCcEEEEEcCCCeEEEEEcCCCCcceEEEeeccCCceeEEEeccCCCCeEE
Q 021657           74 KAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLIL  153 (309)
Q Consensus        74 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~  153 (309)
                      .+|+.  ......+.+|...|++++|+|+++..|++|+.|++|++||....+  ....+.+|...|.+++|+| ++++|+
T Consensus       132 ~~wd~--~~~~~~l~gh~~~v~~v~f~p~~~~~l~s~s~D~~v~lwd~~~~~--~~~~l~~H~~~V~~v~fsp-dg~~la  206 (611)
T 1nr0_A          132 FLFDT--GTSNGNLTGQARAMNSVDFKPSRPFRIISGSDDNTVAIFEGPPFK--FKSTFGEHTKFVHSVRYNP-DGSLFA  206 (611)
T ss_dssp             EETTT--CCBCBCCCCCSSCEEEEEECSSSSCEEEEEETTSCEEEEETTTBE--EEEEECCCSSCEEEEEECT-TSSEEE
T ss_pred             EEeeC--CCCcceecCCCCCceEEEECCCCCeEEEEEeCCCeEEEEECCCCe--EeeeeccccCceEEEEECC-CCCEEE
Confidence            77874  456677899999999999999985579999999999999987766  6778889999999999999 999999


Q ss_pred             EEcCCCcEEEEecCCCCCCCCCCceeeec-------cCCCCeeEEEEecCCCcEEEEecCCCcEEEEeCCcccccccCCC
Q 021657          154 TGSADNSVRMFDRRNLTSNGVGSPINKFE-------GHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGP  226 (309)
Q Consensus       154 ~~~~dg~i~i~d~~~~~~~~~~~~~~~~~-------~~~~~v~~~~~~~~~~~l~~~~~~dg~i~iwd~~~~~~~~~~~~  226 (309)
                      +++.|++|++||+++      ++.+..+.       +|...|.+++|+|++++ |++++.|++|++||++..........
T Consensus       207 s~s~D~~i~lwd~~~------g~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~-l~s~s~D~~v~lWd~~~~~~~~~~~~  279 (611)
T 1nr0_A          207 STGGDGTIVLYNGVD------GTKTGVFEDDSLKNVAHSGSVFGLTWSPDGTK-IASASADKTIKIWNVATLKVEKTIPV  279 (611)
T ss_dssp             EEETTSCEEEEETTT------CCEEEECBCTTSSSCSSSSCEEEEEECTTSSE-EEEEETTSEEEEEETTTTEEEEEEEC
T ss_pred             EEECCCcEEEEECCC------CcEeeeeccccccccccCCCEEEEEECCCCCE-EEEEeCCCeEEEEeCCCCceeeeecC
Confidence            999999999999988      77777773       79999999999999996 67999999999999986322111000


Q ss_pred             C--Cc--------------------------CCCCceeeeecCCCcceeeEEEccCCCeEEEEecCCCCCCCCCCeEEEE
Q 021657          227 R--TT--------------------------NYPAGLFFQHAGHRDKVVDFHWNASDPWTVVSVSDDCDSTGGGGTLQIW  278 (309)
Q Consensus       227 ~--~~--------------------------~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~s~d~~s~~~dg~v~vw  278 (309)
                      .  ..                          .........+.+|...|++++|+|++.+++        +++.|++|++|
T Consensus       280 ~~~~~~~~~~~~~~~~~l~s~s~d~~i~~~~~~~~~~~~~~~gh~~~v~~l~~spdg~~l~--------s~s~D~~v~~W  351 (611)
T 1nr0_A          280 GTRIEDQQLGIIWTKQALVSISANGFINFVNPELGSIDQVRYGHNKAITALSSSADGKTLF--------SADAEGHINSW  351 (611)
T ss_dssp             CSSGGGCEEEEEECSSCEEEEETTCCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEE--------EEETTSCEEEE
T ss_pred             CCCccceeEEEEEcCCEEEEEeCCCcEEEEeCCCCCcceEEcCCCCCEEEEEEeCCCCEEE--------EEeCCCcEEEE
Confidence            0  00                          001123445678999999999999888655        44555999999


Q ss_pred             EccccccCChhhHhHhh-hcccceEEEeeeCC
Q 021657          279 RMSDLIYRPQDEVLAEL-EKFKAHVISCTSKP  309 (309)
Q Consensus       279 ~~~~~~~~~~~~~~~~~-~~h~~~v~~~~~~P  309 (309)
                      |+.      ++++...+ .+|...|.+++|+|
T Consensus       352 d~~------~~~~~~~~~~~h~~~v~~~~~s~  377 (611)
T 1nr0_A          352 DIS------TGISNRVFPDVHATMITGIKTTS  377 (611)
T ss_dssp             ETT------TCCEEECSSCSCSSCEEEEEECT
T ss_pred             ECC------CCceeeecccCCcceEEEEEECC
Confidence            998      44444444 57889999998864

>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1

Probab=100.00  E-value=7.4e-42  Score=281.02  Aligned_cols=243  Identities=20%  Similarity=0.334  Sum_probs=204.1

Q ss_pred             cccCCCCCcceEEEEECCCCCEEEEecCCCcEEEEeCCccccccccCC----ccccccCCCCceeecCCCCCCCCcccCC
Q 021657            2 EILTGHQDNAEFALAMCPTEPYVLSGGKDKSVVLWSIQDHITSSATDP----ATAKSAGSSGSIIKQSPKPGDGNDKAAD   77 (309)
Q Consensus         2 ~~l~~H~~~~V~~~~~~~~~~~l~t~~~dg~i~vwd~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~   77 (309)
                      ++|++|.+ .|++++|+|++++|++|+.||+|+|||+.+.........    ..........  ..+..+..++.+++|+
T Consensus       144 ~~l~~h~~-~V~~v~~~~~~~~l~sgs~D~~i~iwd~~~~~~~~~~~~h~~~V~~v~~~p~~--~~l~s~s~D~~i~~wd  220 (410)
T 1vyh_C          144 RTLKGHTD-SVQDISFDHSGKLLASCSADMTIKLWDFQGFECIRTMHGHDHNVSSVSIMPNG--DHIVSASRDKTIKMWE  220 (410)
T ss_dssp             EEECCCSS-CEEEEEECTTSSEEEEEETTSCCCEEETTSSCEEECCCCCSSCEEEEEECSSS--SEEEEEETTSEEEEEE
T ss_pred             EEEeccCC-cEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeEEEcCCCCCEEEEEEeCCC--CEEEEEeCCCeEEEEE
Confidence            57899999 899999999999999999999999999987644333221    1111111111  1233456788999999


Q ss_pred             CCCcCcccccccccCCeEEEEEecCCCcEEEEEcCCCeEEEEEcCCCCcceEEEeeccCCceeEEEeccCC---------
Q 021657           78 GPSVGPRGIYNGHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLD---------  148 (309)
Q Consensus        78 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~---------  148 (309)
                      ..+...+..+.+|...|.++.|+|++ .+|++|+.|+.|++||+.+++  ....+..|...|.+++|+| +         
T Consensus       221 ~~~~~~~~~~~~h~~~v~~~~~~~~g-~~l~s~s~D~~v~vwd~~~~~--~~~~~~~h~~~v~~~~~~~-~~~~~~~~~~  296 (410)
T 1vyh_C          221 VQTGYCVKTFTGHREWVRMVRPNQDG-TLIASCSNDQTVRVWVVATKE--CKAELREHRHVVECISWAP-ESSYSSISEA  296 (410)
T ss_dssp             TTTCCEEEEEECCSSCEEEEEECTTS-SEEEEEETTSCEEEEETTTCC--EEEEECCCSSCEEEEEECC-SCGGGGGGGC
T ss_pred             CCCCcEEEEEeCCCccEEEEEECCCC-CEEEEEcCCCeEEEEECCCCc--eeeEecCCCceEEEEEEcC-cccccchhhh
Confidence            99999999999999999999999998 889999999999999998887  6778889999999999999 4         


Q ss_pred             -----------CCeEEEEcCCCcEEEEecCCCCCCCCCCceeeeccCCCCeeEEEEecCCCcEEEEecCCCcEEEEeCCc
Q 021657          149 -----------DNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEK  217 (309)
Q Consensus       149 -----------~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~dg~i~iwd~~~  217 (309)
                                 +.+|++|+.|+.|++||+++      +.++..+.+|...|++++|+|++++ +++|+.|+.|++||++.
T Consensus       297 ~~~~~~~~~~~g~~l~sgs~D~~i~iwd~~~------~~~~~~~~~h~~~v~~v~~~~~g~~-l~s~s~D~~i~vwd~~~  369 (410)
T 1vyh_C          297 TGSETKKSGKPGPFLLSGSRDKTIKMWDVST------GMCLMTLVGHDNWVRGVLFHSGGKF-ILSCADDKTLRVWDYKN  369 (410)
T ss_dssp             CSCC-------CCEEEEEETTSEEEEEETTT------TEEEEEEECCSSCEEEEEECSSSSC-EEEEETTTEEEEECCTT
T ss_pred             ccccccccCCCCCEEEEEeCCCeEEEEECCC------CceEEEEECCCCcEEEEEEcCCCCE-EEEEeCCCeEEEEECCC
Confidence                       56899999999999999998      8899999999999999999999997 56999999999999976


Q ss_pred             ccccccCCCCCcCCCCceeeeecCCCcceeeEEEccCCCeEEEEecCCCCCCCCCCeEEEEEcc
Q 021657          218 VGKKVEQGPRTTNYPAGLFFQHAGHRDKVVDFHWNASDPWTVVSVSDDCDSTGGGGTLQIWRMS  281 (309)
Q Consensus       218 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~s~d~~s~~~dg~v~vw~~~  281 (309)
                                     ..++..+.+|...|++++|+|++++++        +|+.||+|++|+++
T Consensus       370 ---------------~~~~~~~~~h~~~v~~l~~~~~~~~l~--------sgs~D~~i~vW~~r  410 (410)
T 1vyh_C          370 ---------------KRCMKTLNAHEHFVTSLDFHKTAPYVV--------TGSVDQTVKVWECR  410 (410)
T ss_dssp             ---------------SCCCEEEECCSSCEEEEEECSSSSCEE--------EEETTSEEEEEC--
T ss_pred             ---------------CceEEEEcCCCCcEEEEEEcCCCCEEE--------EEeCCCcEEEEeCC
Confidence                           345567789999999999999888655        55555999999864

>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1

Probab=100.00  E-value=2.9e-41  Score=276.16  Aligned_cols=272  Identities=20%  Similarity=0.309  Sum_probs=210.2

Q ss_pred             CCCCcceEEEEECCCCCEEEEecCCCcEEEEeCCccccccccCCc----------------------cccccCCCCceee
Q 021657            6 GHQDNAEFALAMCPTEPYVLSGGKDKSVVLWSIQDHITSSATDPA----------------------TAKSAGSSGSIIK   63 (309)
Q Consensus         6 ~H~~~~V~~~~~~~~~~~l~t~~~dg~i~vwd~~~~~~~~~~~~~----------------------~~~~~~~~~~~~~   63 (309)
                      +|.+ .|++++|+|+|++|++|+ |+.++||++.++.........                      .........  ..
T Consensus        62 ~h~~-~V~~v~fspdg~~la~g~-~~~v~i~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~dg--~~  137 (393)
T 1erj_A           62 DHTS-VVCCVKFSNDGEYLATGC-NKTTQVYRVSDGSLVARLSDDSAANKDPENLNTSSSPSSDLYIRSVCFSPDG--KF  137 (393)
T ss_dssp             ECSS-CCCEEEECTTSSEEEEEC-BSCEEEEETTTCCEEEEECC-----------------CCCCBEEEEEECTTS--SE
T ss_pred             CCCC-EEEEEEECCCCCEEEEEc-CCcEEEEEecCCCEEEEecCccccccccccccccccCCCceeEEEEEECCCC--CE
Confidence            5888 899999999999999987 789999999876433221110                      001111111  12


Q ss_pred             cCCCCCCCCcccCCCCCcCcccccccccCCeEEEEEecCCCcEEEEEcCCCeEEEEEcCCCCcceEEEeeccCCceeEEE
Q 021657           64 QSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVD  143 (309)
Q Consensus        64 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~  143 (309)
                      +..+..++.+++|+..+.+.+..+.+|...|.+++|+|++ .+|++++.|++|++||+++++  ....+ .+...+.+++
T Consensus       138 l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~p~~-~~l~s~s~d~~v~iwd~~~~~--~~~~~-~~~~~v~~~~  213 (393)
T 1erj_A          138 LATGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFPSG-DKLVSGSGDRTVRIWDLRTGQ--CSLTL-SIEDGVTTVA  213 (393)
T ss_dssp             EEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTS-SEEEEEETTSEEEEEETTTTE--EEEEE-ECSSCEEEEE
T ss_pred             EEEEcCCCeEEEEECCCCcEEEEEccCCCCEEEEEEcCCC-CEEEEecCCCcEEEEECCCCe--eEEEE-EcCCCcEEEE
Confidence            2334568899999999999999999999999999999998 789999999999999998877  44444 3567899999


Q ss_pred             eccCCCCeEEEEcCCCcEEEEecCCCCCCCCCCceeee-------ccCCCCeeEEEEecCCCcEEEEecCCCcEEEEeCC
Q 021657          144 WNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKF-------EGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYE  216 (309)
Q Consensus       144 ~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~-------~~~~~~v~~~~~~~~~~~l~~~~~~dg~i~iwd~~  216 (309)
                      |+|.++.+|++|+.|+.|++||+++      +..+..+       .+|...|.+++|+|++++ +++|+.|+.|++||++
T Consensus       214 ~~~~~~~~l~~~s~d~~v~iwd~~~------~~~~~~~~~~~~~~~~h~~~v~~v~~~~~g~~-l~s~s~d~~v~~wd~~  286 (393)
T 1erj_A          214 VSPGDGKYIAAGSLDRAVRVWDSET------GFLVERLDSENESGTGHKDSVYSVVFTRDGQS-VVSGSLDRSVKLWNLQ  286 (393)
T ss_dssp             ECSTTCCEEEEEETTSCEEEEETTT------CCEEEEEC------CCCSSCEEEEEECTTSSE-EEEEETTSEEEEEEC-
T ss_pred             EECCCCCEEEEEcCCCcEEEEECCC------CcEEEeecccccCCCCCCCCEEEEEECCCCCE-EEEEeCCCEEEEEECC
Confidence            9997789999999999999999998      6666666       568889999999999996 6799999999999998


Q ss_pred             cccccccCCCCCcCCCCceeeeecCCCcceeeEEEccCCCeEEEEecCCCCCCCCCCeEEEEEccccccCChhhHhHhhh
Q 021657          217 KVGKKVEQGPRTTNYPAGLFFQHAGHRDKVVDFHWNASDPWTVVSVSDDCDSTGGGGTLQIWRMSDLIYRPQDEVLAELE  296 (309)
Q Consensus       217 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~s~d~~s~~~dg~v~vw~~~~~~~~~~~~~~~~~~  296 (309)
                      ........   .......+...+.+|...|.+++|+|++.+++        +|+.|+.|++||+.      +++++..+.
T Consensus       287 ~~~~~~~~---~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~--------sgs~D~~v~iwd~~------~~~~~~~l~  349 (393)
T 1erj_A          287 NANNKSDS---KTPNSGTCEVTYIGHKDFVLSVATTQNDEYIL--------SGSKDRGVLFWDKK------SGNPLLMLQ  349 (393)
T ss_dssp             -----------------CEEEEEECCSSCEEEEEECGGGCEEE--------EEETTSEEEEEETT------TCCEEEEEE
T ss_pred             CCCCcccc---cCCCCCcceEEEecccCcEEEEEECCCCCEEE--------EEeCCCeEEEEECC------CCeEEEEEC
Confidence            73322110   00111335567789999999999999887655        45555999999998      677888899


Q ss_pred             cccceEEEeeeCC
Q 021657          297 KFKAHVISCTSKP  309 (309)
Q Consensus       297 ~h~~~v~~~~~~P  309 (309)
                      +|.+.|.+++|+|
T Consensus       350 ~h~~~v~~v~~~~  362 (393)
T 1erj_A          350 GHRNSVISVAVAN  362 (393)
T ss_dssp             CCSSCEEEEEECS
T ss_pred             CCCCCEEEEEecC
Confidence            9999999999875

>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R

Probab=100.00  E-value=5.3e-40  Score=264.01  Aligned_cols=234  Identities=24%  Similarity=0.410  Sum_probs=188.1

Q ss_pred             cccCCCCCcceEEEEE-----CC-CCCEEEEecCCCcEEEEeCCccccccccCCccccccCCCCceeecCCCCCCCCccc
Q 021657            2 EILTGHQDNAEFALAM-----CP-TEPYVLSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKA   75 (309)
Q Consensus         2 ~~l~~H~~~~V~~~~~-----~~-~~~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   75 (309)
                      ++|+||.+ .|++++|     ++ ++++|+||+.|++|++||+.......                              
T Consensus        15 ~~l~gH~~-~V~~~~~~~s~~~~~d~~~l~sgs~D~~v~iWd~~~~~~~~------------------------------   63 (343)
T 2xzm_R           15 GILEGHSD-WVTSIVAGFSQKENEDSPVLISGSRDKTVMIWKLYEEEQNG------------------------------   63 (343)
T ss_dssp             EEEECCSS-CEEEEEECCCSSTTCCCCEEEEEETTSCEEEEEECSSCCSS------------------------------
T ss_pred             eeeccchh-hhhheeeEEEeecCCCCCEEEEEcCCCEEEEEECCcCCccc------------------------------
Confidence            47899999 8999999     77 89999999999999999987431100                              


Q ss_pred             CCCCCcCcccccccccCCeEEEEEecCCCcEEEEEcCCCeEEEEEcCCCCcceEEEeeccCCceeEEEeccCCCCeEEEE
Q 021657           76 ADGPSVGPRGIYNGHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTG  155 (309)
Q Consensus        76 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~  155 (309)
                         ....+...+.+|...|.+++|+|++ .++++|+.|++|++||+++++  ....+.+|...|.+++|+| ++++|+++
T Consensus        64 ---~~~~~~~~l~~h~~~V~~~~~~~~~-~~l~s~s~D~~v~lwd~~~~~--~~~~~~~h~~~v~~v~~sp-~~~~l~s~  136 (343)
T 2xzm_R           64 ---YFGIPHKALTGHNHFVSDLALSQEN-CFAISSSWDKTLRLWDLRTGT--TYKRFVGHQSEVYSVAFSP-DNRQILSA  136 (343)
T ss_dssp             ---BSEEEEEEECCCSSCEEEEEECSST-TEEEEEETTSEEEEEETTSSC--EEEEEECCCSCEEEEEECS-STTEEEEE
T ss_pred             ---ccccccchhccCCCceEEEEECCCC-CEEEEEcCCCcEEEEECCCCc--EEEEEcCCCCcEEEEEECC-CCCEEEEE
Confidence               0122345678899999999999998 889999999999999999887  6778889999999999999 99999999


Q ss_pred             cCCCcEEEEecCCCCCCCCCCcee--eeccCCCCeeEEEEecCCC---------cEEEEecCCCcEEEEeCCcccccccC
Q 021657          156 SADNSVRMFDRRNLTSNGVGSPIN--KFEGHSAAVLCVQWSPDKS---------SVFGSSAEDGLLNIWDYEKVGKKVEQ  224 (309)
Q Consensus       156 ~~dg~i~i~d~~~~~~~~~~~~~~--~~~~~~~~v~~~~~~~~~~---------~l~~~~~~dg~i~iwd~~~~~~~~~~  224 (309)
                      +.|+.|++||+..      .....  ....|...|.+++|+|++.         .++++++.|+.|++||...       
T Consensus       137 ~~d~~i~~wd~~~------~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~-------  203 (343)
T 2xzm_R          137 GAEREIKLWNILG------ECKFSSAEKENHSDWVSCVRYSPIMKSANKVQPFAPYFASVGWDGRLKVWNTNF-------  203 (343)
T ss_dssp             ETTSCEEEEESSS------CEEEECCTTTSCSSCEEEEEECCCCCSCSCCCSSCCEEEEEETTSEEEEEETTT-------
T ss_pred             cCCCEEEEEeccC------CceeeeecccCCCceeeeeeeccccccccccCCCCCEEEEEcCCCEEEEEcCCC-------
Confidence            9999999999974      22221  1236788999999999872         2578999999999999542       


Q ss_pred             CCCCcCCCCceeeeecCCCcceeeEEEccCCCeEEEEecCCCCCCCCCCeEEEEEccccccCChhhHhHhhhcccceEEE
Q 021657          225 GPRTTNYPAGLFFQHAGHRDKVVDFHWNASDPWTVVSVSDDCDSTGGGGTLQIWRMSDLIYRPQDEVLAELEKFKAHVIS  304 (309)
Q Consensus       225 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~s~d~~s~~~dg~v~vw~~~~~~~~~~~~~~~~~~~h~~~v~~  304 (309)
                               .....+.+|...|.+++|+|++.+++        +|+.||.|++||+..     ...+...+ .+...|.+
T Consensus       204 ---------~~~~~~~~h~~~v~~~~~s~~g~~l~--------sgs~dg~v~iwd~~~-----~~~~~~~~-~~~~~v~~  260 (343)
T 2xzm_R          204 ---------QIRYTFKAHESNVNHLSISPNGKYIA--------TGGKDKKLLIWDILN-----LTYPQREF-DAGSTINQ  260 (343)
T ss_dssp             ---------EEEEEEECCSSCEEEEEECTTSSEEE--------EEETTCEEEEEESSC-----CSSCSEEE-ECSSCEEE
T ss_pred             ---------ceeEEEcCccccceEEEECCCCCEEE--------EEcCCCeEEEEECCC-----Ccccceee-cCCCcEEE
Confidence                     34556788999999999999888655        555559999999953     22222223 35567999


Q ss_pred             eeeCC
Q 021657          305 CTSKP  309 (309)
Q Consensus       305 ~~~~P  309 (309)
                      ++|+|
T Consensus       261 v~~sp  265 (343)
T 2xzm_R          261 IAFNP  265 (343)
T ss_dssp             EEECS
T ss_pred             EEECC
Confidence            99987

>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*

Probab=100.00  E-value=2.9e-40  Score=265.15  Aligned_cols=240  Identities=20%  Similarity=0.290  Sum_probs=196.0

Q ss_pred             cccCCCCCcceEEEEECCCCCEEEEecCCCcEEEEeCCccccccc------cC--CccccccCCCCceeecCCCCCCCCc
Q 021657            2 EILTGHQDNAEFALAMCPTEPYVLSGGKDKSVVLWSIQDHITSSA------TD--PATAKSAGSSGSIIKQSPKPGDGND   73 (309)
Q Consensus         2 ~~l~~H~~~~V~~~~~~~~~~~l~t~~~dg~i~vwd~~~~~~~~~------~~--~~~~~~~~~~~~~~~~~~~~~~~~~   73 (309)
                      +.+..|.. .|.+++|+|++++|++|+.|+.|++|++.+......      ..  ...........   .+..+..++.+
T Consensus        91 ~~~~~~~~-~v~~~~~s~~~~~l~s~~~d~~v~iw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~---~l~s~s~d~~i  166 (340)
T 1got_B           91 HAIPLRSS-WVMTCAYAPSGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDN---QIVTSSGDTTC  166 (340)
T ss_dssp             EEEECSSS-CEEEEEECTTSSEEEEEETTCEEEEEETTTCSBSCEEEEEEECCSSCEEEEEEEETT---EEEEEETTSCE
T ss_pred             eEeecCCc-cEEEEEECCCCCEEEEEeCCCeEEEEECccCCCcceeEEEecCCCccEEEEEECCCC---cEEEEECCCcE
Confidence            35677888 899999999999999999999999999976421110      00  00001111111   12345568899


Q ss_pred             ccCCCCCcCcccccccccCCeEEEEEecCCCcEEEEEcCCCeEEEEEcCCCCcceEEEeeccCCceeEEEeccCCCCeEE
Q 021657           74 KAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLIL  153 (309)
Q Consensus        74 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~  153 (309)
                      ++|+..+.+.+..+.+|...|.+++|+|++ .+|++|+.|+.|++||++++.  ....+.+|...|.+++|+| ++++|+
T Consensus       167 ~~wd~~~~~~~~~~~~h~~~v~~~~~~~~~-~~l~sg~~d~~v~~wd~~~~~--~~~~~~~h~~~v~~v~~~p-~~~~l~  242 (340)
T 1got_B          167 ALWDIETGQQTTTFTGHTGDVMSLSLAPDT-RLFVSGACDASAKLWDVREGM--CRQTFTGHESDINAICFFP-NGNAFA  242 (340)
T ss_dssp             EEEETTTTEEEEEECCCSSCEEEEEECTTS-SEEEEEETTSCEEEEETTTCS--EEEEECCCSSCEEEEEECT-TSSEEE
T ss_pred             EEEECCCCcEEEEEcCCCCceEEEEECCCC-CEEEEEeCCCcEEEEECCCCe--eEEEEcCCcCCEEEEEEcC-CCCEEE
Confidence            999999999999999999999999999998 889999999999999999887  6788889999999999999 999999


Q ss_pred             EEcCCCcEEEEecCCCCCCCCCCceeeecc--CCCCeeEEEEecCCCcEEEEecCCCcEEEEeCCcccccccCCCCCcCC
Q 021657          154 TGSADNSVRMFDRRNLTSNGVGSPINKFEG--HSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNY  231 (309)
Q Consensus       154 ~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~--~~~~v~~~~~~~~~~~l~~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~  231 (309)
                      +|+.||.|++||+++      .+.+..+..  +...|++++|+|++++ +++|+.|+.|++||+..              
T Consensus       243 s~s~d~~v~iwd~~~------~~~~~~~~~~~~~~~v~~~~~s~~g~~-l~~g~~d~~i~vwd~~~--------------  301 (340)
T 1got_B          243 TGSDDATCRLFDLRA------DQELMTYSHDNIICGITSVSFSKSGRL-LLAGYDDFNCNVWDALK--------------  301 (340)
T ss_dssp             EEETTSCEEEEETTT------TEEEEEECCTTCCSCEEEEEECTTSSE-EEEEETTSEEEEEETTT--------------
T ss_pred             EEcCCCcEEEEECCC------CcEEEEEccCCcccceEEEEECCCCCE-EEEECCCCeEEEEEccc--------------
Confidence            999999999999998      666666643  3357999999999995 67999999999999987              


Q ss_pred             CCceeeeecCCCcceeeEEEccCCCeEEEEecCCCCCCCCCCeEEEEE
Q 021657          232 PAGLFFQHAGHRDKVVDFHWNASDPWTVVSVSDDCDSTGGGGTLQIWR  279 (309)
Q Consensus       232 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~s~d~~s~~~dg~v~vw~  279 (309)
                       ...+..+.+|..+|.+++|+|++.+++        ||+.|+.|++||
T Consensus       302 -~~~~~~~~~h~~~v~~~~~s~dg~~l~--------s~s~D~~i~iWd  340 (340)
T 1got_B          302 -ADRAGVLAGHDNRVSCLGVTDDGMAVA--------TGSWDSFLKIWN  340 (340)
T ss_dssp             -CCEEEEEECCSSCEEEEEECTTSSCEE--------EEETTSCEEEEC
T ss_pred             -CcEeeEeecCCCcEEEEEEcCCCCEEE--------EEcCCccEEecC
Confidence             345667889999999999999887655        555559999996

>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A

Probab=100.00  E-value=6.3e-41  Score=266.23  Aligned_cols=241  Identities=23%  Similarity=0.308  Sum_probs=186.3

Q ss_pred             ccCCCCCcceEEEEECCCCCEEEEecCCCcEEEEeCCccccccccCCccccccCCCCceeecCCCCCCCCcccCCCCCcC
Q 021657            3 ILTGHQDNAEFALAMCPTEPYVLSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVG   82 (309)
Q Consensus         3 ~l~~H~~~~V~~~~~~~~~~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   82 (309)
                      .+.+|.+ +|++++|+|+|++|++|+.|++|+|||+.++.                                      ..
T Consensus         8 ~~~~H~~-~V~~v~~s~~g~~lasgs~D~~v~lwd~~~~~--------------------------------------~~   48 (316)
T 3bg1_A            8 VDTSHED-MIHDAQMDYYGTRLATCSSDRSVKIFDVRNGG--------------------------------------QI   48 (316)
T ss_dssp             ------C-CEEEEEECGGGCEEEEEETTTEEEEEEEETTE--------------------------------------EE
T ss_pred             ecccccC-eEEEeeEcCCCCEEEEEeCCCeEEEEEecCCC--------------------------------------cE
Confidence            5679999 89999999999999999999999999987421                                      11


Q ss_pred             cccccccccCCeEEEEEecC--CCcEEEEEcCCCeEEEEEcCCCCcceEEEeeccCCceeEEEeccCC--CCeEEEEcCC
Q 021657           83 PRGIYNGHEDTVEDVTFCPS--SAQEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLD--DNLILTGSAD  158 (309)
Q Consensus        83 ~~~~~~~~~~~v~~~~~~~~--~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~--~~~l~~~~~d  158 (309)
                      .+..+.+|...|++++|+++  + .+|++|+.|++|++||+++++......+.+|...|.+++|+| +  +.+|++|+.|
T Consensus        49 ~~~~l~gH~~~V~~v~~~~~~~~-~~l~s~s~D~~v~iWd~~~~~~~~~~~~~~h~~~V~~v~~~p-~~~g~~lasgs~D  126 (316)
T 3bg1_A           49 LIADLRGHEGPVWQVAWAHPMYG-NILASCSYDRKVIIWREENGTWEKSHEHAGHDSSVNSVCWAP-HDYGLILACGSSD  126 (316)
T ss_dssp             EEEEEECCSSCEEEEEECCGGGS-SCEEEEETTSCEEEECCSSSCCCEEEEECCCSSCCCEEEECC-TTTCSCEEEECSS
T ss_pred             EEEEEcCCCccEEEEEeCCCCCC-CEEEEEECCCEEEEEECCCCcceEEEEccCCCCceEEEEECC-CCCCcEEEEEcCC
Confidence            24567899999999999753  5 789999999999999998875445667788999999999999 6  7899999999


Q ss_pred             CcEEEEecCCCCCCCCCCceeeeccCCCCeeEEEEecCC-----------------CcEEEEecCCCcEEEEeCCccccc
Q 021657          159 NSVRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWSPDK-----------------SSVFGSSAEDGLLNIWDYEKVGKK  221 (309)
Q Consensus       159 g~i~i~d~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-----------------~~l~~~~~~dg~i~iwd~~~~~~~  221 (309)
                      +.|++||++....   ......+.+|...+.+++|+|+.                 . +|++|+.|+.|++||++..+. 
T Consensus       127 ~~i~lwd~~~~~~---~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~-~l~sgs~D~~v~lWd~~~~~~-  201 (316)
T 3bg1_A          127 GAISLLTYTGEGQ---WEVKKINNAHTIGCNAVSWAPAVVPGSLIDHPSGQKPNYIK-RFASGGCDNLIKLWKEEEDGQ-  201 (316)
T ss_dssp             SCEEEEEECSSSC---EEECCBTTSSSSCBCCCEECCCCCC------CCSCCCCCCC-BEECCBTTSBCCEEEECTTSC-
T ss_pred             CCEEEEecCCCCC---cceeeeeccccCCcceEEEccccCCccccccccccCccccc-eEEEecCCCeEEEEEeCCCCc-
Confidence            9999999987210   11245567888999999999973                 4 478999999999999975211 


Q ss_pred             ccCCCCCcCCCCceeeeecCCCcceeeEEEccCC---CeEEEEecCCCCCCCCCCeEEEEEccccccCChhhHhHhhhcc
Q 021657          222 VEQGPRTTNYPAGLFFQHAGHRDKVVDFHWNASD---PWTVVSVSDDCDSTGGGGTLQIWRMSDLIYRPQDEVLAELEKF  298 (309)
Q Consensus       222 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~---~~~~~s~s~d~~s~~~dg~v~vw~~~~~~~~~~~~~~~~~~~h  298 (309)
                                 ......+.+|...|.+++|+|++   ..+++++|.|       ++|++|++......  ......+..|
T Consensus       202 -----------~~~~~~l~~h~~~V~~v~~sp~~~~~~~~las~s~D-------~~v~iw~~~~~~~~--~~~~~~~~~~  261 (316)
T 3bg1_A          202 -----------WKEEQKLEAHSDWVRDVAWAPSIGLPTSTIASCSQD-------GRVFIWTCDDASSN--TWSPKLLHKF  261 (316)
T ss_dssp             -----------EEEEECCBCCSSCEEEEECCCCSSCSCCEEEEEETT-------CEEEEEECSSTTCC--CCBCCEEEEC
T ss_pred             -----------cceeeecccCCCceEEEEecCCCCCCCceEEEEcCC-------CeEEEEEccCcccc--chhhhhhhcC
Confidence                       12455678999999999999986   2467766655       99999999842100  0112345678


Q ss_pred             cceEEEeeeCC
Q 021657          299 KAHVISCTSKP  309 (309)
Q Consensus       299 ~~~v~~~~~~P  309 (309)
                      .+.|++++|+|
T Consensus       262 ~~~v~~v~~sp  272 (316)
T 3bg1_A          262 NDVVWHVSWSI  272 (316)
T ss_dssp             SSCEEEEEECT
T ss_pred             CCcEEEEEEcC
Confidence            89999999997

>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}

Probab=100.00  E-value=3.2e-40  Score=263.79  Aligned_cols=242  Identities=19%  Similarity=0.283  Sum_probs=185.0

Q ss_pred             cccCCCCCcceEEEEECCCCCEEEEecCCCcEEEEeCCccccccccCCccccccCCCCceeecCCCCCCCCcccCCCCCc
Q 021657            2 EILTGHQDNAEFALAMCPTEPYVLSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSV   81 (309)
Q Consensus         2 ~~l~~H~~~~V~~~~~~~~~~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (309)
                      ++|++|.+ +|++++|+|+  +|++|+.|++|++||+..+.                                      .
T Consensus         8 ~~~~~h~~-~v~~~~~s~~--~las~~~D~~i~lw~~~~~~--------------------------------------~   46 (330)
T 2hes_X            8 KSLKLYKE-KIWSFDFSQG--ILATGSTDRKIKLVSVKYDD--------------------------------------F   46 (330)
T ss_dssp             EEEECCSS-CEEEEEEETT--EEEEEESSSCEEEEECSSSC--------------------------------------C
T ss_pred             eeeccCCC-ceeeeccCCC--EEEEEcCCCEEEEEEecCCC--------------------------------------e
Confidence            57899999 8999999987  99999999999999997421                                      1


Q ss_pred             Cccccc-c-cccCCeEEEEEecCCCcEEEEEcCCCeEEEEEcCCC-----CcceEEEeeccCCceeEEEeccCCCCeEEE
Q 021657           82 GPRGIY-N-GHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVG-----TSPVIKVEKAHDADLHCVDWNPLDDNLILT  154 (309)
Q Consensus        82 ~~~~~~-~-~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~-----~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~  154 (309)
                      .....+ . +|...|.+++|+|++ .+|++|+.|++|++||+...     .......+.+|...|.+++|+| ++++|++
T Consensus        47 ~~~~~~~~~~h~~~v~~v~~sp~~-~~las~s~D~~v~iw~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~sp-~g~~las  124 (330)
T 2hes_X           47 TLIDVLDETAHKKAIRSVAWRPHT-SLLAAGSFDSTVSIWAKEESADRTFEMDLLAIIEGHENEVKGVAWSN-DGYYLAT  124 (330)
T ss_dssp             EEEEEECTTCCCSCEEEEEECTTS-SEEEEEETTSCEEEEEC-------CCCEEEEEEC----CEEEEEECT-TSCEEEE
T ss_pred             EEEEEEecCCccCCEEEEEECCCC-CEEEEEeCCCcEEEEEcccCcCccccceeEEEEcCCCCcEEEEEECC-CCCEEEE
Confidence            112223 2 399999999999998 88999999999999998542     1234567789999999999999 9999999


Q ss_pred             EcCCCcEEEEecCCCCCCCCCCceeeeccCCCCeeEEEEecCCCcEEEEecCCCcEEEEeCCcccccccCCCCCcCCCCc
Q 021657          155 GSADNSVRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAG  234 (309)
Q Consensus       155 ~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~  234 (309)
                      |+.|+.|++||++....  ..+.+..+.+|...|++++|+|++.. |++++.|+.|++||+....             ..
T Consensus       125 ~s~D~~v~iwd~~~~~~--~~~~~~~~~~h~~~v~~v~~~p~~~~-l~s~s~D~~i~iW~~~~~~-------------~~  188 (330)
T 2hes_X          125 CSRDKSVWIWETDESGE--EYECISVLQEHSQDVKHVIWHPSEAL-LASSSYDDTVRIWKDYDDD-------------WE  188 (330)
T ss_dssp             EETTSCEEEEECCTTCC--CCEEEEEECCCSSCEEEEEECSSSSE-EEEEETTSCEEEEEEETTE-------------EE
T ss_pred             EeCCCEEEEEeccCCCC--CeEEEEEeccCCCceEEEEECCCCCE-EEEEcCCCeEEEEECCCCC-------------ee
Confidence            99999999999954210  03567788899999999999999995 6799999999999987511             13


Q ss_pred             eeeeecCCCcceeeEEEccCC-CeEEEEecCCCCCCCCCCeEEEEEccccccCCh--hhHhHhhhc-ccceEEEeeeCC
Q 021657          235 LFFQHAGHRDKVVDFHWNASD-PWTVVSVSDDCDSTGGGGTLQIWRMSDLIYRPQ--DEVLAELEK-FKAHVISCTSKP  309 (309)
Q Consensus       235 ~~~~~~~~~~~v~~~~~~~~~-~~~~~s~s~d~~s~~~dg~v~vw~~~~~~~~~~--~~~~~~~~~-h~~~v~~~~~~P  309 (309)
                      ++..+.+|...|.+++|+|++ ..++++++.|       ++|++||+........  ..++..+.+ |...|.+++|+|
T Consensus       189 ~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~D-------~~v~iw~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~  260 (330)
T 2hes_X          189 CVAVLNGHEGTVWSSDFDKTEGVFRLCSGSDD-------STVRVWKYMGDDEDDQQEWVCEAILPDVHKRQVYNVAWGF  260 (330)
T ss_dssp             EEEEECCCSSCEEEEEECCSSSSCEEEEEETT-------SCEEEEEEEEECTTSCEEEEEEEECCSCCSSCEEEEEECT
T ss_pred             EEEEccCCCCcEEEEEecCCCCeeEEEEEeCC-------CeEEEEEecCCCccccceeEEeeecccccccceEEEEEcC
Confidence            566788999999999999984 3456655555       9999999974211000  023344544 889999999975

>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}

Probab=100.00  E-value=3.5e-40  Score=266.08  Aligned_cols=209  Identities=25%  Similarity=0.379  Sum_probs=178.4

Q ss_pred             cCCCCCcceEEEEECCCCCEEEEecCCCcEEEEeCCccccccccCCccccccCCCCceeecCCCCCCCCcccCCCCCcCc
Q 021657            4 LTGHQDNAEFALAMCPTEPYVLSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGP   83 (309)
Q Consensus         4 l~~H~~~~V~~~~~~~~~~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   83 (309)
                      +.+|.+ .|++++|+|++++|++|+.||+|++||+++                                        .+.
T Consensus       135 ~~~h~~-~V~~v~~spdg~~l~sgs~dg~v~iwd~~~----------------------------------------~~~  173 (357)
T 4g56_B          135 KYEHDD-IVKTLSVFSDGTQAVSGGKDFSVKVWDLSQ----------------------------------------KAV  173 (357)
T ss_dssp             ECCCSS-CEEEEEECSSSSEEEEEETTSCEEEEETTT----------------------------------------TEE
T ss_pred             cCCCCC-CEEEEEECCCCCEEEEEeCCCeEEEEECCC----------------------------------------CcE
Confidence            347888 899999999999999999999999999974                                        344


Q ss_pred             ccccccccCCeEEEEEecCCCcEEEEEcCCCeEEEEEcCCCCcceEEEeeccCCceeEEEeccCCCCeEEEEcCCCcEEE
Q 021657           84 RGIYNGHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRM  163 (309)
Q Consensus        84 ~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i  163 (309)
                      +..+.+|...|++++|+|++..++++++.||.|++||+++++.........+...+.+++|+|.++.+|++|+.|+.|++
T Consensus       174 ~~~~~~h~~~v~~v~~s~~~~~~~~s~~~dg~v~~wd~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~~la~g~~d~~i~~  253 (357)
T 4g56_B          174 LKSYNAHSSEVNCVAACPGKDTIFLSCGEDGRILLWDTRKPKPATRIDFCASDTIPTSVTWHPEKDDTFACGDETGNVSL  253 (357)
T ss_dssp             EEEECCCSSCEEEEEECTTCSSCEEEEETTSCEEECCTTSSSCBCBCCCTTCCSCEEEEEECTTSTTEEEEEESSSCEEE
T ss_pred             EEEEcCCCCCEEEEEEccCCCceeeeeccCCceEEEECCCCceeeeeeeccccccccchhhhhcccceEEEeecccceeE
Confidence            56677899999999999998678999999999999999988743344445677889999999955678999999999999


Q ss_pred             EecCCCCCCCCCCceeeeccCCCCeeEEEEecCCCcEEEEecCCCcEEEEeCCcccccccCCCCCcCCCCceeeeecCCC
Q 021657          164 FDRRNLTSNGVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHR  243 (309)
Q Consensus       164 ~d~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  243 (309)
                      ||+++      ++.+..+.+|...|++++|+|++..+||+|+.|+.|+|||++.               .++ ....+|.
T Consensus       254 wd~~~------~~~~~~~~~~~~~v~~l~~sp~~~~~lasgs~D~~i~iwd~~~---------------~~~-~~~~~H~  311 (357)
T 4g56_B          254 VNIKN------PDSAQTSAVHSQNITGLAYSYHSSPFLASISEDCTVAVLDADF---------------SEV-FRDLSHR  311 (357)
T ss_dssp             EESSC------GGGCEEECCCSSCEEEEEECSSSSCCEEEEETTSCEEEECTTS---------------CEE-EEECCCS
T ss_pred             EECCC------CcEeEEEeccceeEEEEEEcCCCCCEEEEEeCCCEEEEEECCC---------------CcE-eEECCCC
Confidence            99998      8889999999999999999999876788999999999999986               222 3345799


Q ss_pred             cceeeEEEccCCCeEEEEecCCCCCCCCCCeEEEEEccc
Q 021657          244 DKVVDFHWNASDPWTVVSVSDDCDSTGGGGTLQIWRMSD  282 (309)
Q Consensus       244 ~~v~~~~~~~~~~~~~~s~s~d~~s~~~dg~v~vw~~~~  282 (309)
                      ..|++++|+|.++.+++++|.|       |+|++|++..
T Consensus       312 ~~V~~vafsP~d~~~l~s~s~D-------g~v~iW~~~~  343 (357)
T 4g56_B          312 DFVTGVAWSPLDHSKFTTVGWD-------HKVLHHHLPS  343 (357)
T ss_dssp             SCEEEEEECSSSTTEEEEEETT-------SCEEEEECC-
T ss_pred             CCEEEEEEeCCCCCEEEEEcCC-------CeEEEEECCC
Confidence            9999999999555567766655       9999999973

>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}

Probab=100.00  E-value=1.9e-39  Score=278.48  Aligned_cols=260  Identities=24%  Similarity=0.448  Sum_probs=211.2

Q ss_pred             cccCCCCCcceEEEEECCCCCEEEEecCCCcEEEEeCCcccccccc-C--CccccccCCCCceeecCCCCCCCCcccCCC
Q 021657            2 EILTGHQDNAEFALAMCPTEPYVLSGGKDKSVVLWSIQDHITSSAT-D--PATAKSAGSSGSIIKQSPKPGDGNDKAADG   78 (309)
Q Consensus         2 ~~l~~H~~~~V~~~~~~~~~~~l~t~~~dg~i~vwd~~~~~~~~~~-~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   78 (309)
                      +.+.+|.+ .|++++|+|++++|++++.||.|++||+......... .  ............  .+..+..++.+.+|+.
T Consensus       297 ~~~~~h~~-~v~~~~~~~~~~~l~t~~~d~~i~~w~~~~~~~~~~~~~~~~v~~~~~s~~g~--~l~~~~~dg~v~~~~~  373 (577)
T 2ymu_A          297 QTLTGHSS-SVWGVAFSPDGQTIASASDDKTVKLWNRNGQHLQTLTGHSSSVWGVAFSPDGQ--TIASASDDKTVKLWNR  373 (577)
T ss_dssp             EEECCCSS-CEEEEEECTTSSEEEEEETTSCEEEEETTSCEEEEECCCSSCEEEEEECTTSS--EEEEEETTSEEEEEET
T ss_pred             EEEecCCC-CeEEEEECCCCCEEEEEeCCCeEEEEeCCCCeeEEEeCCCCCEEEEEECCCCC--EEEEEeCCCEEEEEcC
Confidence            46789998 8999999999999999999999999998765221111 1  111111111111  2223445677888884


Q ss_pred             CCcCcccccccccCCeEEEEEecCCCcEEEEEcCCCeEEEEEcCCCCcceEEEeeccCCceeEEEeccCCCCeEEEEcCC
Q 021657           79 PSVGPRGIYNGHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSAD  158 (309)
Q Consensus        79 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d  158 (309)
                       +.+.+..+.+|...|.+++|+|++ .+|++++.|+.|++||. +++  ....+.+|...|++++|+| ++++|++++.|
T Consensus       374 -~~~~~~~~~~~~~~v~~~~~s~dg-~~l~~~~~d~~v~~~~~-~~~--~~~~~~~~~~~v~~~~~s~-d~~~l~~~~~d  447 (577)
T 2ymu_A          374 -NGQLLQTLTGHSSSVRGVAFSPDG-QTIASASDDKTVKLWNR-NGQ--LLQTLTGHSSSVWGVAFSP-DDQTIASASDD  447 (577)
T ss_dssp             -TCCEEEEEECCSSCEEEEEECTTS-SCEEEEETTSEEEEECT-TCC--EEEEEECCSSCEEEEEECT-TSSEEEEEETT
T ss_pred             -CCCEEEEecCCCCCeEEEEECCCC-CEEEEEeCCCEEEEEeC-CCC--EEEEecCCCCCeEEEEECC-CCCEEEEEcCC
Confidence             556777888999999999999998 78999999999999996 344  5777889999999999999 99999999999


Q ss_pred             CcEEEEecCCCCCCCCCCceeeeccCCCCeeEEEEecCCCcEEEEecCCCcEEEEeCCcccccccCCCCCcCCCCceeee
Q 021657          159 NSVRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQ  238 (309)
Q Consensus       159 g~i~i~d~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~  238 (309)
                      +.|++||..       ++.+..+.+|...|++++|+|++++ +++++.|+.|++||...                .++..
T Consensus       448 ~~v~~w~~~-------~~~~~~~~~~~~~v~~~~~spd~~~-las~~~d~~i~iw~~~~----------------~~~~~  503 (577)
T 2ymu_A          448 KTVKLWNRN-------GQLLQTLTGHSSSVRGVAFSPDGQT-IASASDDKTVKLWNRNG----------------QLLQT  503 (577)
T ss_dssp             SEEEEEETT-------SCEEEEEECCSSCEEEEEECTTSCE-EEEEETTSEEEEEETTS----------------CEEEE
T ss_pred             CEEEEEECC-------CCEEEEEcCCCCCEEEEEEcCCCCE-EEEEeCCCEEEEEcCCC----------------CEEEE
Confidence            999999964       6788889999999999999999995 67999999999999643                35667


Q ss_pred             ecCCCcceeeEEEccCCCeEEEEecCCCCCCCCCCeEEEEEccccccCChhhHhHhhhcccceEEEeeeCC
Q 021657          239 HAGHRDKVVDFHWNASDPWTVVSVSDDCDSTGGGGTLQIWRMSDLIYRPQDEVLAELEKFKAHVISCTSKP  309 (309)
Q Consensus       239 ~~~~~~~v~~~~~~~~~~~~~~s~s~d~~s~~~dg~v~vw~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~P  309 (309)
                      +.+|...|++++|+|++.+|+        +++.||.|++||..       ++++.++.+|.+.|++++|+|
T Consensus       504 ~~~h~~~v~~l~~s~dg~~l~--------s~~~dg~v~lwd~~-------~~~~~~~~~h~~~v~~~~fs~  559 (577)
T 2ymu_A          504 LTGHSSSVRGVAFSPDGQTIA--------SASDDKTVKLWNRN-------GQLLQTLTGHSSSVWGVAFSP  559 (577)
T ss_dssp             EECCSSCEEEEEECTTSSCEE--------EEETTSEEEEECTT-------SCEEEEEECCSSCEEEEEECT
T ss_pred             EeCCCCCEEEEEEcCCCCEEE--------EEECcCEEEEEeCC-------CCEEEEEcCCCCCEEEEEEcC
Confidence            889999999999999888655        44445999999964       567888999999999999997

>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}

Probab=100.00  E-value=5.7e-39  Score=261.45  Aligned_cols=246  Identities=19%  Similarity=0.304  Sum_probs=192.2

Q ss_pred             cccCCCCCcceEEEEECCCCCEEEEecCCCcEEEEeCCccccccccC---------Cc--cccccCCCCceeecCCCCCC
Q 021657            2 EILTGHQDNAEFALAMCPTEPYVLSGGKDKSVVLWSIQDHITSSATD---------PA--TAKSAGSSGSIIKQSPKPGD   70 (309)
Q Consensus         2 ~~l~~H~~~~V~~~~~~~~~~~l~t~~~dg~i~vwd~~~~~~~~~~~---------~~--~~~~~~~~~~~~~~~~~~~~   70 (309)
                      +.+++|.. .|.+++|+|++++|++|+.|+.|++||+..........         ..  ........ ....+..+..+
T Consensus       102 ~~~~~h~~-~v~~~~~s~~g~~las~~~d~~v~iw~~~~~~~~~~~~~~~~~~~gh~~~v~~~~~~~~-~~~~l~s~s~D  179 (380)
T 3iz6_a          102 HAIKLHCP-WVMECAFAPNGQSVACGGLDSACSIFNLSSQADRDGNMPVSRVLTGHKGYASSCQYVPD-QETRLITGSGD  179 (380)
T ss_dssp             EEEECCCT-TCCCCEECTTSSEEEECCSSSCCEEEECCCCSSCCCSSTTCCBCCCCSSCCCCCBCCSS-SSSCEEEECTT
T ss_pred             eEEecCCC-CEEEEEECCCCCEEEEeeCCCcEEEEECCCCccccCCccceeeccCCCcceEEEEEecC-CCCEEEEECCC
Confidence            45778998 89999999999999999999999999997542111000         00  00000000 01123345678


Q ss_pred             CCcccCCCCCcCccccc-----ccccCCeEEEEEecCCCcEEEEEcCCCeEEEEEcCCCCcceEEEeeccCCceeEEEec
Q 021657           71 GNDKAADGPSVGPRGIY-----NGHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWN  145 (309)
Q Consensus        71 ~~~~~~~~~~~~~~~~~-----~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~  145 (309)
                      +.+++|+..+.+.+..+     .+|...|.++.|++.+..+|++|+.|+.|++||++.... ....+.+|...|.+++|+
T Consensus       180 ~~i~~wd~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~sgs~D~~v~~wd~~~~~~-~~~~~~~h~~~v~~v~~~  258 (380)
T 3iz6_a          180 QTCVLWDVTTGQRISIFGSEFPSGHTADVLSLSINSLNANMFISGSCDTTVRLWDLRITSR-AVRTYHGHEGDINSVKFF  258 (380)
T ss_dssp             SCEEEECTTTCCEEEEECCCSSSSCCSCEEEEEECSSSCCEEEEEETTSCEEEEETTTTCC-CCEEECCCSSCCCEEEEC
T ss_pred             CcEEEEEcCCCcEEEEeecccCCCCccCeEEEEeecCCCCEEEEEECCCeEEEEECCCCCc-ceEEECCcCCCeEEEEEe
Confidence            99999999998877665     679999999999885448999999999999999975432 567788999999999999


Q ss_pred             cCCCCeEEEEcCCCcEEEEecCCCCCCCCCCceeeeccCC-------CCeeEEEEecCCCcEEEEecCCCcEEEEeCCcc
Q 021657          146 PLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGHS-------AAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKV  218 (309)
Q Consensus       146 ~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~-------~~v~~~~~~~~~~~l~~~~~~dg~i~iwd~~~~  218 (309)
                      | ++.+|++|+.||+|++||+++      +..+..+..+.       ..|++++|+|+|++ +++|+.||.|++||+...
T Consensus       259 p-~~~~l~s~s~D~~i~lwd~~~------~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~-l~~g~~dg~i~vwd~~~~  330 (380)
T 3iz6_a          259 P-DGQRFGTGSDDGTCRLFDMRT------GHQLQVYNREPDRNDNELPIVTSVAFSISGRL-LFAGYSNGDCYVWDTLLA  330 (380)
T ss_dssp             T-TSSEEEEECSSSCEEEEETTT------TEEEEEECCCCSSSCCSSCSCSEEEECSSSSE-EEEECTTSCEEEEETTTC
T ss_pred             c-CCCeEEEEcCCCeEEEEECCC------CcEEEEecccccccccccCceEEEEECCCCCE-EEEEECCCCEEEEECCCC
Confidence            9 999999999999999999998      77777665432       24899999999996 669999999999998762


Q ss_pred             cccccCCCCCcCCCCceeeee----cCCCcceeeEEEccCCCeEEEEecCCCCCCCCCCeEEEEEcc
Q 021657          219 GKKVEQGPRTTNYPAGLFFQH----AGHRDKVVDFHWNASDPWTVVSVSDDCDSTGGGGTLQIWRMS  281 (309)
Q Consensus       219 ~~~~~~~~~~~~~~~~~~~~~----~~~~~~v~~~~~~~~~~~~~~s~s~d~~s~~~dg~v~vw~~~  281 (309)
                                     ..+..+    .+|...|.+++|+|++.+++        ||+.|++|++|++.
T Consensus       331 ---------------~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~--------sgs~D~~i~iW~~~  374 (380)
T 3iz6_a          331 ---------------EMVLNLGTLQNSHEGRISCLGLSSDGSALC--------TGSWDKNLKIWAFS  374 (380)
T ss_dssp             ---------------CEEEEECCSCSSCCCCCCEEEECSSSSEEE--------EECTTSCEEEEECC
T ss_pred             ---------------ceEEEEecccCCCCCceEEEEECCCCCEEE--------EeeCCCCEEEEecC
Confidence                           222222    67999999999999988655        55566999999998

>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}

Probab=100.00  E-value=5.2e-39  Score=258.31  Aligned_cols=260  Identities=17%  Similarity=0.268  Sum_probs=194.9

Q ss_pred             cCCCCCcceEEEEECCCCCEEEEecCCCcEEEEeCCcccc--c--cccC--CccccccCCCCceeecCCCCCCCCcccCC
Q 021657            4 LTGHQDNAEFALAMCPTEPYVLSGGKDKSVVLWSIQDHIT--S--SATD--PATAKSAGSSGSIIKQSPKPGDGNDKAAD   77 (309)
Q Consensus         4 l~~H~~~~V~~~~~~~~~~~l~t~~~dg~i~vwd~~~~~~--~--~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   77 (309)
                      ..+|.+ .|++++|+|++++|++|+.|++|+|||+.....  .  ....  ...........  ..+..+..++.+++|+
T Consensus        57 ~~~h~~-~v~~~~~sp~g~~l~s~s~D~~v~iw~~~~~~~~~~~~~~~h~~~v~~v~~sp~~--~~l~s~s~D~~v~iwd  133 (345)
T 3fm0_A           57 SEGHQR-TVRKVAWSPCGNYLASASFDATTCIWKKNQDDFECVTTLEGHENEVKSVAWAPSG--NLLATCSRDKSVWVWE  133 (345)
T ss_dssp             CSSCSS-CEEEEEECTTSSEEEEEETTSCEEEEEECCC-EEEEEEECCCSSCEEEEEECTTS--SEEEEEETTSCEEEEE
T ss_pred             ccccCC-cEEEEEECCCCCEEEEEECCCcEEEEEccCCCeEEEEEccCCCCCceEEEEeCCC--CEEEEEECCCeEEEEE
Confidence            368998 899999999999999999999999999876521  1  1111  11111111111  2333455678899998


Q ss_pred             CCCcC---cccccccccCCeEEEEEecCCCcEEEEEcCCCeEEEEEcCCCCcceEEEeeccCCceeEEEeccCCCCeEEE
Q 021657           78 GPSVG---PRGIYNGHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILT  154 (309)
Q Consensus        78 ~~~~~---~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~  154 (309)
                      .....   .+..+.+|...|.+++|+|++ .+|++|+.|+.|++||.+.++......+.+|...|.+++|+| ++++|++
T Consensus       134 ~~~~~~~~~~~~~~~h~~~v~~~~~~p~~-~~l~s~s~d~~i~~w~~~~~~~~~~~~~~~h~~~v~~l~~sp-~g~~l~s  211 (345)
T 3fm0_A          134 VDEEDEYECVSVLNSHTQDVKHVVWHPSQ-ELLASASYDDTVKLYREEEDDWVCCATLEGHESTVWSLAFDP-SGQRLAS  211 (345)
T ss_dssp             ECTTSCEEEEEEECCCCSCEEEEEECSSS-SCEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECT-TSSEEEE
T ss_pred             CCCCCCeEEEEEecCcCCCeEEEEECCCC-CEEEEEeCCCcEEEEEecCCCEEEEEEecCCCCceEEEEECC-CCCEEEE
Confidence            87653   356678899999999999998 789999999999999998776445667889999999999999 9999999


Q ss_pred             EcCCCcEEEEecCCCCCCC---------CCCceeeecc-CCCCeeEEEEecCCCcEEEEecCCCcEEEEeCCcccccccC
Q 021657          155 GSADNSVRMFDRRNLTSNG---------VGSPINKFEG-HSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQ  224 (309)
Q Consensus       155 ~~~dg~i~i~d~~~~~~~~---------~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~~dg~i~iwd~~~~~~~~~~  224 (309)
                      ++.|++|++||........         ..+++..+.+ |...|.+++|+|++.. +++++.|+.|++|+..........
T Consensus       212 ~s~D~~v~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~-l~s~~~d~~i~vw~~~~~~~~~~~  290 (345)
T 3fm0_A          212 CSDDRTVRIWRQYLPGNEQGVACSGSDPSWKCICTLSGFHSRTIYDIAWCQLTGA-LATACGDDAIRVFQEDPNSDPQQP  290 (345)
T ss_dssp             EETTSCEEEEEEECTTCTTCCCCC---CEEEEEEEECSSCSSCEEEEEECTTTCC-EEEEETTSCEEEEEECTTSCTTSC
T ss_pred             EeCCCeEEEeccccCCCCccceeeccCCccceeEEecCCCCCcEEEEEEecCCCE-EEEEeCCCeEEEEEeCCCCCccee
Confidence            9999999999975432110         0122334444 7889999999999996 679999999999998763221110


Q ss_pred             CCCCcCCCCceeeeecCCCcceeeEEEccCCCeEEEEecCCCCCCCCCCeEEEEEccc
Q 021657          225 GPRTTNYPAGLFFQHAGHRDKVVDFHWNASDPWTVVSVSDDCDSTGGGGTLQIWRMSD  282 (309)
Q Consensus       225 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~s~d~~s~~~dg~v~vw~~~~  282 (309)
                            ..........+|...|++++|+|+++.+++++|.|       |+|++|++..
T Consensus       291 ------~~~~~~~~~~~h~~~V~~v~~~p~~~~~laS~s~D-------g~v~~W~~~~  335 (345)
T 3fm0_A          291 ------TFSLTAHLHQAHSQDVNCVAWNPKEPGLLASCSDD-------GEVAFWKYQR  335 (345)
T ss_dssp             ------CEEEEEEETTSSSSCEEEEEECSSSTTEEEEEETT-------SCEEEEEECC
T ss_pred             ------eEEEEeeecccccCcEeEeEEeCCCceEEEEcCCC-------CcEEEEEecC
Confidence                  00011223468999999999999987778877666       9999999983

>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}

Probab=100.00  E-value=1.4e-38  Score=254.31  Aligned_cols=240  Identities=18%  Similarity=0.330  Sum_probs=180.4

Q ss_pred             CCCcceEEEEECCCCCEEEEecCCCcEEEEeCCccccccccCCccccccCCCCceeecCCCCCCCCcccCCCCCcCcccc
Q 021657            7 HQDNAEFALAMCPTEPYVLSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGI   86 (309)
Q Consensus         7 H~~~~V~~~~~~~~~~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   86 (309)
                      |.+ .|++++|+|++++|++|+.|++|+|||++.....                                 ....+.+..
T Consensus        57 h~~-~v~~v~~sp~~~~las~s~D~~v~iw~~~~~~~~---------------------------------~~~~~~~~~  102 (330)
T 2hes_X           57 HKK-AIRSVAWRPHTSLLAAGSFDSTVSIWAKEESADR---------------------------------TFEMDLLAI  102 (330)
T ss_dssp             CCS-CEEEEEECTTSSEEEEEETTSCEEEEEC----------------------------------------CCCEEEEE
T ss_pred             ccC-CEEEEEECCCCCEEEEEeCCCcEEEEEcccCcCc---------------------------------cccceeEEE
Confidence            888 8999999999999999999999999998632100                                 012234566


Q ss_pred             cccccCCeEEEEEecCCCcEEEEEcCCCeEEEEEcCCCC--cceEEEeeccCCceeEEEeccCCCCeEEEEcCCCcEEEE
Q 021657           87 YNGHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGT--SPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMF  164 (309)
Q Consensus        87 ~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~--~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~  164 (309)
                      +.+|...|.+++|+|++ .+|++|+.|++|++||++...  ......+.+|...|.+++|+| ++.+|++++.|++|++|
T Consensus       103 ~~~h~~~V~~v~~sp~g-~~las~s~D~~v~iwd~~~~~~~~~~~~~~~~h~~~v~~v~~~p-~~~~l~s~s~D~~i~iW  180 (330)
T 2hes_X          103 IEGHENEVKGVAWSNDG-YYLATCSRDKSVWIWETDESGEEYECISVLQEHSQDVKHVIWHP-SEALLASSSYDDTVRIW  180 (330)
T ss_dssp             EC----CEEEEEECTTS-CEEEEEETTSCEEEEECCTTCCCCEEEEEECCCSSCEEEEEECS-SSSEEEEEETTSCEEEE
T ss_pred             EcCCCCcEEEEEECCCC-CEEEEEeCCCEEEEEeccCCCCCeEEEEEeccCCCceEEEEECC-CCCEEEEEcCCCeEEEE
Confidence            78899999999999998 889999999999999995432  234567789999999999999 99999999999999999


Q ss_pred             ecCCCCCCCCCCceeeeccCCCCeeEEEEecC--CCcEEEEecCCCcEEEEeCCcccccccCCCCCcCCCCceeeeecC-
Q 021657          165 DRRNLTSNGVGSPINKFEGHSAAVLCVQWSPD--KSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAG-  241 (309)
Q Consensus       165 d~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~--~~~l~~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~-  241 (309)
                      |.+...    .+++..+.+|...|.+++|+|+  +. .+++|+.|+.|++||++.......       ........+.+ 
T Consensus       181 ~~~~~~----~~~~~~~~~h~~~v~~~~~~~~~~~~-~l~s~s~D~~v~iw~~~~~~~~~~-------~~~~~~~~~~~~  248 (330)
T 2hes_X          181 KDYDDD----WECVAVLNGHEGTVWSSDFDKTEGVF-RLCSGSDDSTVRVWKYMGDDEDDQ-------QEWVCEAILPDV  248 (330)
T ss_dssp             EEETTE----EEEEEEECCCSSCEEEEEECCSSSSC-EEEEEETTSCEEEEEEEEECTTSC-------EEEEEEEECCSC
T ss_pred             ECCCCC----eeEEEEccCCCCcEEEEEecCCCCee-EEEEEeCCCeEEEEEecCCCcccc-------ceeEEeeecccc
Confidence            998621    2678889999999999999998  44 467999999999999976321100       00122333444 


Q ss_pred             CCcceeeEEEccCCCeEEEEecCCCCCCCCCCeEEEEEccccccCChh--hHh-Hhhhcccc-eEEEeeeCC
Q 021657          242 HRDKVVDFHWNASDPWTVVSVSDDCDSTGGGGTLQIWRMSDLIYRPQD--EVL-AELEKFKA-HVISCTSKP  309 (309)
Q Consensus       242 ~~~~v~~~~~~~~~~~~~~s~s~d~~s~~~dg~v~vw~~~~~~~~~~~--~~~-~~~~~h~~-~v~~~~~~P  309 (309)
                      |...|.+++|++++  ++++++.|       |.|++|+..      .+  +.+ ..+.+|.. .|.+++|+|
T Consensus       249 h~~~v~~v~~s~~~--~l~s~~~d-------g~v~iw~~~------~~~~~~~~~~~~~h~~~~v~~v~~~~  305 (330)
T 2hes_X          249 HKRQVYNVAWGFNG--LIASVGAD-------GVLAVYEEV------DGEWKVFAKRALCHGVYEINVVKWLE  305 (330)
T ss_dssp             CSSCEEEEEECTTS--CEEEEETT-------SCEEEEEEE------TTEEEEEEEESCTTTTSCEEEEEEC-
T ss_pred             cccceEEEEEcCCC--EEEEEeCC-------CEEEEEEcC------CCceEEEeccccccccceEEEEEEec
Confidence            88999999999754  45555544       999999987      33  222 22357877 899999987

>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*

Probab=100.00  E-value=1.1e-39  Score=270.29  Aligned_cols=213  Identities=17%  Similarity=0.245  Sum_probs=171.6

Q ss_pred             ccCCCCCcceEEEEECC-CCCEEEEecCCCcEEEEeCCccccccccCCccccccCCCCceeecCCCCCCCCcccCCCCCc
Q 021657            3 ILTGHQDNAEFALAMCP-TEPYVLSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSV   81 (309)
Q Consensus         3 ~l~~H~~~~V~~~~~~~-~~~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (309)
                      ...+|.. .|+||+|+| ++.+||+|+.||.|+|||+.+.                                      ..
T Consensus       114 ~~~~~~~-~V~~l~~~P~~~~~lasGs~dg~i~lWd~~~~--------------------------------------~~  154 (435)
T 4e54_B          114 KAAPFDR-RATSLAWHPTHPSTVAVGSKGGDIMLWNFGIK--------------------------------------DK  154 (435)
T ss_dssp             EEEECSS-CEEEEEECSSCTTCEEEEETTSCEEEECSSCC--------------------------------------SC
T ss_pred             cCCCCCC-CEEEEEEeCCCCCEEEEEeCCCEEEEEECCCC--------------------------------------Cc
Confidence            3456777 899999999 5679999999999999999743                                      11


Q ss_pred             CcccccccccCCeEEEEEecCCCcEEEEEcCCCeEEEEEcCCCCcceEEEeeccCCceeEEEeccCCCCeEEEEcCCCcE
Q 021657           82 GPRGIYNGHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSV  161 (309)
Q Consensus        82 ~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i  161 (309)
                      .....+.+|.+.|++|+|+|.++.+|++|+.||+|++||+++...........+...+.+++|+| ++.+|++|+.||.|
T Consensus       155 ~~~~~~~gH~~~V~~l~f~p~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~~g~~dg~i  233 (435)
T 4e54_B          155 PTFIKGIGAGGSITGLKFNPLNTNQFYASSMEGTTRLQDFKGNILRVFASSDTINIWFCSLDVSA-SSRMVVTGDNVGNV  233 (435)
T ss_dssp             CEEECCCSSSCCCCEEEECSSCTTEEEEECSSSCEEEEETTSCEEEEEECCSSCSCCCCCEEEET-TTTEEEEECSSSBE
T ss_pred             eeEEEccCCCCCEEEEEEeCCCCCEEEEEeCCCEEEEeeccCCceeEEeccCCCCccEEEEEECC-CCCEEEEEeCCCcE
Confidence            22344568999999999998655899999999999999997655222222223345688999999 99999999999999


Q ss_pred             EEEecCCCCCCCCCCceeeeccCCCCeeEEEEecCCCcEEEEecCCCcEEEEeCCcccccccCCCCCcCCCCceeeeecC
Q 021657          162 RMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAG  241 (309)
Q Consensus       162 ~i~d~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~  241 (309)
                      ++||++       ++.+..+.+|...|++++|+|++..++++|+.|+.|++||++.....            ..+....+
T Consensus       234 ~~wd~~-------~~~~~~~~~h~~~v~~v~~~p~~~~~~~s~s~d~~v~iwd~~~~~~~------------~~~~~~~~  294 (435)
T 4e54_B          234 ILLNMD-------GKELWNLRMHKKKVTHVALNPCCDWFLATASVDQTVKIWDLRQVRGK------------ASFLYSLP  294 (435)
T ss_dssp             EEEESS-------SCBCCCSBCCSSCEEEEEECTTCSSEEEEEETTSBCCEEETTTCCSS------------SCCSBCCB
T ss_pred             eeeccC-------cceeEEEecccceEEeeeecCCCceEEEEecCcceeeEEeccccccc------------ceEEEeee
Confidence            999987       45677888999999999999999988899999999999999873321            12334467


Q ss_pred             CCcceeeEEEccCCCeEEEEecCCCCCCCCCCeEEEEEccc
Q 021657          242 HRDKVVDFHWNASDPWTVVSVSDDCDSTGGGGTLQIWRMSD  282 (309)
Q Consensus       242 ~~~~v~~~~~~~~~~~~~~s~s~d~~s~~~dg~v~vw~~~~  282 (309)
                      |...|++++|+|++.+|+        +|+.||.|+|||+..
T Consensus       295 h~~~v~~~~~spdg~~l~--------s~~~D~~i~iwd~~~  327 (435)
T 4e54_B          295 HRHPVNAACFSPDGARLL--------TTDQKSEIRVYSASQ  327 (435)
T ss_dssp             CSSCEEECCBCTTSSEEE--------EEESSSCEEEEESSS
T ss_pred             ccccccceeECCCCCeeE--------EEcCCCEEEEEECCC
Confidence            999999999999888655        455559999999983

>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*

Probab=100.00  E-value=5.6e-38  Score=249.59  Aligned_cols=225  Identities=17%  Similarity=0.322  Sum_probs=186.6

Q ss_pred             cccCCCCCcceEEEEECCCCCEEEEecCCCcEEEEeCCccccccccCCccccccCCCCceeecCCCCCCCCcccCCCCCc
Q 021657            2 EILTGHQDNAEFALAMCPTEPYVLSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSV   81 (309)
Q Consensus         2 ~~l~~H~~~~V~~~~~~~~~~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (309)
                      +.|++|.. .|++++|+|++++|++|+.|++|+|||+.+                                        .
T Consensus        59 ~~~~~h~~-~v~~~~~s~dg~~l~s~s~D~~v~~wd~~~----------------------------------------~   97 (319)
T 3frx_A           59 RSFKGHSH-IVQDCTLTADGAYALSASWDKTLRLWDVAT----------------------------------------G   97 (319)
T ss_dssp             EEEECCSS-CEEEEEECTTSSEEEEEETTSEEEEEETTT----------------------------------------T
T ss_pred             eEEeCCcc-cEEEEEECCCCCEEEEEeCCCEEEEEECCC----------------------------------------C
Confidence            46889999 899999999999999999999999999974                                        3


Q ss_pred             CcccccccccCCeEEEEEecCCCcEEEEEcCCCeEEEEEcCCCCcceEEEeeccCCceeEEEeccC-----CCCeEEEEc
Q 021657           82 GPRGIYNGHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPL-----DDNLILTGS  156 (309)
Q Consensus        82 ~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~-----~~~~l~~~~  156 (309)
                      +.+..+.+|...|.+++|+|++ .+|++|+.|++|++||++. +  ....+.+|...|.+++|.|.     ++..+++++
T Consensus        98 ~~~~~~~~h~~~v~~~~~~~~~-~~l~s~s~D~~i~vwd~~~-~--~~~~~~~h~~~v~~~~~~~~~~~~~~~~~l~s~~  173 (319)
T 3frx_A           98 ETYQRFVGHKSDVMSVDIDKKA-SMIISGSRDKTIKVWTIKG-Q--CLATLLGHNDWVSQVRVVPNEKADDDSVTIISAG  173 (319)
T ss_dssp             EEEEEEECCSSCEEEEEECTTS-CEEEEEETTSCEEEEETTS-C--EEEEECCCSSCEEEEEECCC------CCEEEEEE
T ss_pred             CeeEEEccCCCcEEEEEEcCCC-CEEEEEeCCCeEEEEECCC-C--eEEEEeccCCcEEEEEEccCCCCCCCccEEEEEe
Confidence            3456678899999999999998 8899999999999999963 3  46777899999999999982     234899999


Q ss_pred             CCCcEEEEecCCCCCCCCCCceeeeccCCCCeeEEEEecCCCcEEEEecCCCcEEEEeCCcccccccCCCCCcCCCCcee
Q 021657          157 ADNSVRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLF  236 (309)
Q Consensus       157 ~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~  236 (309)
                      .|+.|++||+++      .+....+.+|...|++++|+|++++ |++|+.||.|++||++.               ...+
T Consensus       174 ~d~~i~~wd~~~------~~~~~~~~~h~~~v~~~~~sp~g~~-l~s~~~dg~i~iwd~~~---------------~~~~  231 (319)
T 3frx_A          174 NDKMVKAWNLNQ------FQIEADFIGHNSNINTLTASPDGTL-IASAGKDGEIMLWNLAA---------------KKAM  231 (319)
T ss_dssp             TTSCEEEEETTT------TEEEEEECCCCSCEEEEEECTTSSE-EEEEETTCEEEEEETTT---------------TEEE
T ss_pred             CCCEEEEEECCc------chhheeecCCCCcEEEEEEcCCCCE-EEEEeCCCeEEEEECCC---------------CcEE
Confidence            999999999998      7888899999999999999999995 67999999999999987               3344


Q ss_pred             eeecCCCcceeeEEEccCCCeEEEEecCCCCCCCCCCeEEEEEccccccCChhhHhHh--------hhcccceEEEeeeC
Q 021657          237 FQHAGHRDKVVDFHWNASDPWTVVSVSDDCDSTGGGGTLQIWRMSDLIYRPQDEVLAE--------LEKFKAHVISCTSK  308 (309)
Q Consensus       237 ~~~~~~~~~v~~~~~~~~~~~~~~s~s~d~~s~~~dg~v~vw~~~~~~~~~~~~~~~~--------~~~h~~~v~~~~~~  308 (309)
                      ..+.. ...|.+++|+|++..++ +++.        +.+++|++..      ...+..        ...|...+.+++|+
T Consensus       232 ~~~~~-~~~v~~~~~sp~~~~la-~~~~--------~~i~v~~~~~------~~~~~~~~~~~~~~~~~~~~~v~~~~~s  295 (319)
T 3frx_A          232 YTLSA-QDEVFSLAFSPNRYWLA-AATA--------TGIKVFSLDP------QYLVDDLRPEFAGYSKAAEPHAVSLAWS  295 (319)
T ss_dssp             EEEEC-CSCEEEEEECSSSSEEE-EEET--------TEEEEEEETT------EEEEEEECCCCTTCCGGGCCCEEEEEEC
T ss_pred             EEecC-CCcEEEEEEcCCCCEEE-EEcC--------CCcEEEEeCc------CeeeeccCccccccccCcCcceeEEEEC
Confidence            45544 46899999999887654 3333        4699999973      222222        23567789999999


Q ss_pred             C
Q 021657          309 P  309 (309)
Q Consensus       309 P  309 (309)
                      |
T Consensus       296 p  296 (319)
T 3frx_A          296 A  296 (319)
T ss_dssp             T
T ss_pred             C
Confidence            8

>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}

Probab=100.00  E-value=1e-39  Score=265.87  Aligned_cols=243  Identities=12%  Similarity=0.121  Sum_probs=187.0

Q ss_pred             cCCCCCcceEEEEECCCCCEEEEecCCCcEEEEeCCccccccccCCccccccCCCCceeecCCCCCCCCcccCCCCCcCc
Q 021657            4 LTGHQDNAEFALAMCPTEPYVLSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGP   83 (309)
Q Consensus         4 l~~H~~~~V~~~~~~~~~~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   83 (309)
                      ++.|.+ +|++++|+|++++|++|+.||.|+|||+.++.                                      .+.
T Consensus         7 ~~~~~~-~v~~~~~s~~g~~l~~~~~d~~i~iw~~~~~~--------------------------------------~~~   47 (377)
T 3dwl_C            7 LHILPK-PSYEHAFNSQRTEFVTTTATNQVELYEQDGNG--------------------------------------WKH   47 (377)
T ss_dssp             EEECSS-CCSCCEECSSSSEEECCCSSSCBCEEEEETTE--------------------------------------EEE
T ss_pred             EecCCC-cEEEEEECCCCCEEEEecCCCEEEEEEccCCc--------------------------------------eEE
Confidence            344566 89999999999999999999999999997421                                      134


Q ss_pred             ccccccccCCeEEEEEecCCCcEEEEEcCCCeEEEEEcCCCC-cceEEEeeccCCceeEEEeccCCCCeEEEEcCCCcEE
Q 021657           84 RGIYNGHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGT-SPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVR  162 (309)
Q Consensus        84 ~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~-~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~  162 (309)
                      +..+.+|...|.+++|+|++ .+|++++.|+.|++||+.+++ ......+..|...|.+++|+| ++++|++++.|+.|+
T Consensus        48 ~~~~~~h~~~v~~~~~s~~~-~~l~s~s~d~~v~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~d~~i~  125 (377)
T 3dwl_C           48 ARTFSDHDKIVTCVDWAPKS-NRIVTCSQDRNAYVYEKRPDGTWKQTLVLLRLNRAATFVRWSP-NEDKFAVGSGARVIS  125 (377)
T ss_dssp             CCCBCCCSSCEEEEEECTTT-CCEEEEETTSSEEEC------CCCCEEECCCCSSCEEEEECCT-TSSCCEEEESSSCEE
T ss_pred             EEEEecCCceEEEEEEeCCC-CEEEEEeCCCeEEEEEcCCCCceeeeeEecccCCceEEEEECC-CCCEEEEEecCCeEE
Confidence            45677899999999999998 889999999999999998765 334666778999999999999 999999999999999


Q ss_pred             EEecCCCCCCCCCC---ceeeecc-CCCCeeEEEEecCCCcEEEEecCCCcEEEEeCCcccccccCCCCCcC---CCCce
Q 021657          163 MFDRRNLTSNGVGS---PINKFEG-HSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTN---YPAGL  235 (309)
Q Consensus       163 i~d~~~~~~~~~~~---~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~~dg~i~iwd~~~~~~~~~~~~~~~~---~~~~~  235 (309)
                      +||++.      .+   ....+.. |...|++++|+|++.+ +++++.|+.|++||++..............   ....+
T Consensus       126 iwd~~~------~~~~~~~~~~~~~h~~~v~~~~~~~~~~~-l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~  198 (377)
T 3dwl_C          126 VCYFEQ------ENDWWVSKHLKRPLRSTILSLDWHPNNVL-LAAGCADRKAYVLSAYVRDVDAKPEASVWGSRLPFNTV  198 (377)
T ss_dssp             ECCC-----------CCCCEEECSSCCSCEEEEEECTTSSE-EEEEESSSCEEEEEECCSSCC-CCCSCSSCSCCCEEEE
T ss_pred             EEEECC------cccceeeeEeecccCCCeEEEEEcCCCCE-EEEEeCCCEEEEEEEEecccCCCccccccccccchhhh
Confidence            999998      44   4677777 8999999999999985 679999999999999752211111110000   11234


Q ss_pred             eeeecCCCcceeeEEEccCCCeEEEEecCCCCCCCCCCeEEEEEccccccCChhhH----hHhhhcccceEEEeeeCC
Q 021657          236 FFQHAGHRDKVVDFHWNASDPWTVVSVSDDCDSTGGGGTLQIWRMSDLIYRPQDEV----LAELEKFKAHVISCTSKP  309 (309)
Q Consensus       236 ~~~~~~~~~~v~~~~~~~~~~~~~~s~s~d~~s~~~dg~v~vw~~~~~~~~~~~~~----~~~~~~h~~~v~~~~~~P  309 (309)
                      +..+ +|...|.+++|+|++.+++        +++.||.|++||+.      .+++    +..+.+|..+|.+++|+|
T Consensus       199 ~~~~-~~~~~v~~~~~sp~~~~l~--------~~~~d~~i~iwd~~------~~~~~~~~~~~~~~~~~~v~~~~~s~  261 (377)
T 3dwl_C          199 CAEY-PSGGWVHAVGFSPSGNALA--------YAGHDSSVTIAYPS------APEQPPRALITVKLSQLPLRSLLWAN  261 (377)
T ss_dssp             EECC-CCSSSEEEEEECTTSSCEE--------EEETTTEEC-CEEC------STTSCEEECCCEECSSSCEEEEEEEE
T ss_pred             hhcc-cCCceEEEEEECCCCCEEE--------EEeCCCcEEEEECC------CCCCcceeeEeecCCCCceEEEEEcC
Confidence            5555 8999999999999888655        44455999999999      4555    788899999999999986

>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}

Probab=100.00  E-value=3.4e-38  Score=256.78  Aligned_cols=244  Identities=22%  Similarity=0.345  Sum_probs=196.9

Q ss_pred             CcccCCCCCcceEEEEECCCCCEEEEecCCCcEEEEeCCccccccccCCccccccCCCCceeecCCCCCCCCcccCCCCC
Q 021657            1 MEILTGHQDNAEFALAMCPTEPYVLSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPS   80 (309)
Q Consensus         1 l~~l~~H~~~~V~~~~~~~~~~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (309)
                      ++++++|.+ .|++++|+|++++|++|+.||.|+|||+...                                      +
T Consensus         4 ~~~~~~h~~-~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~--------------------------------------~   44 (379)
T 3jrp_A            4 VVIANAHNE-LIHDAVLDYYGKRLATCSSDKTIKIFEVEGE--------------------------------------T   44 (379)
T ss_dssp             -CCEEECCC-CEEEEEECSSSSEEEEEETTSCEEEEEEETT--------------------------------------E
T ss_pred             cEEecCCcc-cEEEEEEcCCCCEEEEEECCCcEEEEecCCC--------------------------------------c
Confidence            467899999 8999999999999999999999999998631                                      2


Q ss_pred             cCcccccccccCCeEEEEEecC--CCcEEEEEcCCCeEEEEEcCCCCcceEEEeeccCCceeEEEeccCC--CCeEEEEc
Q 021657           81 VGPRGIYNGHEDTVEDVTFCPS--SAQEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLD--DNLILTGS  156 (309)
Q Consensus        81 ~~~~~~~~~~~~~v~~~~~~~~--~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~--~~~l~~~~  156 (309)
                      .+.+..+.+|...|++++|+++  + .+|++++.||.|++||+.+++......+..|...|.+++|+| +  +.+|++++
T Consensus        45 ~~~~~~~~~h~~~v~~~~~~~~~~~-~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~~~l~~~~  122 (379)
T 3jrp_A           45 HKLIDTLTGHEGPVWRVDWAHPKFG-TILASCSYDGKVLIWKEENGRWSQIAVHAVHSASVNSVQWAP-HEYGPLLLVAS  122 (379)
T ss_dssp             EEEEEEECCCSSCEEEEEECCGGGC-SEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECC-GGGCSEEEEEE
T ss_pred             ceeeeEecCCCCcEEEEEeCCCCCC-CEEEEeccCCEEEEEEcCCCceeEeeeecCCCcceEEEEeCC-CCCCCEEEEec
Confidence            2345567789999999999876  6 889999999999999999876445677778999999999999 7  89999999


Q ss_pred             CCCcEEEEecCCCCCCCCCCceeeeccCCCCeeEEEEec-------------CCCcEEEEecCCCcEEEEeCCccccccc
Q 021657          157 ADNSVRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWSP-------------DKSSVFGSSAEDGLLNIWDYEKVGKKVE  223 (309)
Q Consensus       157 ~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-------------~~~~l~~~~~~dg~i~iwd~~~~~~~~~  223 (309)
                      .|+.|++||++...    ......+..|...|.+++|+|             ++.. +++++.||.|++||++.....  
T Consensus       123 ~d~~i~v~d~~~~~----~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~-l~~~~~dg~i~i~d~~~~~~~--  195 (379)
T 3jrp_A          123 SDGKVSVVEFKENG----TTSPIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRK-FVTGGADNLVKIWKYNSDAQT--  195 (379)
T ss_dssp             TTSEEEEEECCTTS----CCCEEEEECCTTCEEEEEECCCC----------CTTCE-EEEEETTSCEEEEEEETTTTE--
T ss_pred             CCCcEEEEecCCCC----ceeeEEecCCCCceEEEEEcCccccccccccCCCCCCE-EEEEeCCCeEEEEEecCCCcc--
Confidence            99999999999832    234556778899999999999             5774 679999999999999863221  


Q ss_pred             CCCCCcCCCCceeeeecCCCcceeeEEEccCC--CeEEEEecCCCCCCCCCCeEEEEEccccccCChhhHhHhhhcccce
Q 021657          224 QGPRTTNYPAGLFFQHAGHRDKVVDFHWNASD--PWTVVSVSDDCDSTGGGGTLQIWRMSDLIYRPQDEVLAELEKFKAH  301 (309)
Q Consensus       224 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~--~~~~~s~s~d~~s~~~dg~v~vw~~~~~~~~~~~~~~~~~~~h~~~  301 (309)
                               ......+.+|...|.+++|+|++  ..++++++.|       |.|++||+....... ...+.....|...
T Consensus       196 ---------~~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~d-------g~i~iwd~~~~~~~~-~~~~~~~~~~~~~  258 (379)
T 3jrp_A          196 ---------YVLESTLEGHSDWVRDVAWSPTVLLRSYLASVSQD-------RTCIIWTQDNEQGPW-KKTLLKEEKFPDV  258 (379)
T ss_dssp             ---------EEEEEEECCCSSCEEEEEECCCCSSSEEEEEEETT-------SCEEEEEESSTTSCC-EEEESSSSCCSSC
T ss_pred             ---------eeeEEEEecccCcEeEEEECCCCCCCCeEEEEeCC-------CEEEEEeCCCCCccc-eeeeeccccCCCc
Confidence                     23456778899999999999984  5566655555       999999998421100 1233344568899


Q ss_pred             EEEeeeCC
Q 021657          302 VISCTSKP  309 (309)
Q Consensus       302 v~~~~~~P  309 (309)
                      |.+++|+|
T Consensus       259 v~~~~~s~  266 (379)
T 3jrp_A          259 LWRASWSL  266 (379)
T ss_dssp             EEEEEECS
T ss_pred             EEEEEEcC
Confidence            99999987

>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R

Probab=100.00  E-value=4.5e-38  Score=252.76  Aligned_cols=230  Identities=19%  Similarity=0.290  Sum_probs=180.6

Q ss_pred             cccCCCCCcceEEEEECCCCCEEEEecCCCcEEEEeCCccccccccCCccccccCCCCceeecCCCCCCCCcccCCCCCc
Q 021657            2 EILTGHQDNAEFALAMCPTEPYVLSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSV   81 (309)
Q Consensus         2 ~~l~~H~~~~V~~~~~~~~~~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (309)
                      +.|.+|.. .|++++|+|++.+|++|+.|++|++||+++                                        .
T Consensus        70 ~~l~~h~~-~V~~~~~~~~~~~l~s~s~D~~v~lwd~~~----------------------------------------~  108 (343)
T 2xzm_R           70 KALTGHNH-FVSDLALSQENCFAISSSWDKTLRLWDLRT----------------------------------------G  108 (343)
T ss_dssp             EEECCCSS-CEEEEEECSSTTEEEEEETTSEEEEEETTS----------------------------------------S
T ss_pred             chhccCCC-ceEEEEECCCCCEEEEEcCCCcEEEEECCC----------------------------------------C
Confidence            35789999 899999999999999999999999999974                                        3


Q ss_pred             CcccccccccCCeEEEEEecCCCcEEEEEcCCCeEEEEEcCCCCcceEEEe---eccCCceeEEEeccCCC---------
Q 021657           82 GPRGIYNGHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPVIKVE---KAHDADLHCVDWNPLDD---------  149 (309)
Q Consensus        82 ~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~---~~~~~~v~~~~~~~~~~---------  149 (309)
                      +.+..+.+|...|.+++|+|++ .+|++++.|+.|++||+....   ....   ..|...|.+++|+| .+         
T Consensus       109 ~~~~~~~~h~~~v~~v~~sp~~-~~l~s~~~d~~i~~wd~~~~~---~~~~~~~~~~~~~v~~~~~~~-~~~~~~~~~~~  183 (343)
T 2xzm_R          109 TTYKRFVGHQSEVYSVAFSPDN-RQILSAGAEREIKLWNILGEC---KFSSAEKENHSDWVSCVRYSP-IMKSANKVQPF  183 (343)
T ss_dssp             CEEEEEECCCSCEEEEEECSST-TEEEEEETTSCEEEEESSSCE---EEECCTTTSCSSCEEEEEECC-CCCSCSCCCSS
T ss_pred             cEEEEEcCCCCcEEEEEECCCC-CEEEEEcCCCEEEEEeccCCc---eeeeecccCCCceeeeeeecc-ccccccccCCC
Confidence            3456678899999999999998 789999999999999997332   2222   26888999999999 65         


Q ss_pred             -CeEEEEcCCCcEEEEecCCCCCCCCCCceeeeccCCCCeeEEEEecCCCcEEEEecCCCcEEEEeCCcccccccCCCCC
Q 021657          150 -NLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRT  228 (309)
Q Consensus       150 -~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~dg~i~iwd~~~~~~~~~~~~~~  228 (309)
                       .+|++++.||.|++||..       .+....+.+|...|++++|+|++++ |++|+.||.|++||++.....       
T Consensus       184 ~~~l~s~~~d~~i~iwd~~-------~~~~~~~~~h~~~v~~~~~s~~g~~-l~sgs~dg~v~iwd~~~~~~~-------  248 (343)
T 2xzm_R          184 APYFASVGWDGRLKVWNTN-------FQIRYTFKAHESNVNHLSISPNGKY-IATGGKDKKLLIWDILNLTYP-------  248 (343)
T ss_dssp             CCEEEEEETTSEEEEEETT-------TEEEEEEECCSSCEEEEEECTTSSE-EEEEETTCEEEEEESSCCSSC-------
T ss_pred             CCEEEEEcCCCEEEEEcCC-------CceeEEEcCccccceEEEECCCCCE-EEEEcCCCeEEEEECCCCccc-------
Confidence             789999999999999943       5677788899999999999999996 679999999999999652221       


Q ss_pred             cCCCCceeeeecCCCcceeeEEEccCCCeEEEEecCCCCCCCCCCeEEEEEccccccCC--h-----hhHhHhhhcccce
Q 021657          229 TNYPAGLFFQHAGHRDKVVDFHWNASDPWTVVSVSDDCDSTGGGGTLQIWRMSDLIYRP--Q-----DEVLAELEKFKAH  301 (309)
Q Consensus       229 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~s~d~~s~~~dg~v~vw~~~~~~~~~--~-----~~~~~~~~~h~~~  301 (309)
                             ...+ .+...|.+++|+|++.. ++++ .|       +.|++|++......+  .     ........+|...
T Consensus       249 -------~~~~-~~~~~v~~v~~sp~~~~-la~~-~d-------~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  311 (343)
T 2xzm_R          249 -------QREF-DAGSTINQIAFNPKLQW-VAVG-TD-------QGVKIFNLMTQSKAPVCTIEAEPITKAEGQKGKNPQ  311 (343)
T ss_dssp             -------SEEE-ECSSCEEEEEECSSSCE-EEEE-ES-------SCEEEEESSSCCSCSEEECCCCSGGGBTTBCCSCCC
T ss_pred             -------ceee-cCCCcEEEEEECCCCCE-EEEE-CC-------CCEEEEEeCCCCCCceEEeecCcchhhhhhcCCCCc
Confidence                   1112 24456999999998764 4333 33       789999997432111  0     0011122378889


Q ss_pred             EEEeeeCC
Q 021657          302 VISCTSKP  309 (309)
Q Consensus       302 v~~~~~~P  309 (309)
                      |.+++|+|
T Consensus       312 v~~~~~sp  319 (343)
T 2xzm_R          312 CTSLAWNA  319 (343)
T ss_dssp             EEEEEECS
T ss_pred             eEEEEECC
Confidence            99999997

>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A

Probab=100.00  E-value=1.6e-37  Score=244.51  Aligned_cols=215  Identities=20%  Similarity=0.354  Sum_probs=172.6

Q ss_pred             cccCCCCCcceEEEEECCC--CCEEEEecCCCcEEEEeCCccccccccCCccccccCCCCceeecCCCCCCCCcccCCCC
Q 021657            2 EILTGHQDNAEFALAMCPT--EPYVLSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGP   79 (309)
Q Consensus         2 ~~l~~H~~~~V~~~~~~~~--~~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   79 (309)
                      ++|.+|.+ +|++++|+|+  +++|++|+.||+|+|||++++.                                     
T Consensus        47 ~~l~gH~~-~V~~v~~s~~~~g~~l~s~s~D~~v~iWd~~~~~-------------------------------------   88 (297)
T 2pm7_B           47 DTLTGHEG-PVWRVDWAHPKFGTILASCSYDGKVMIWKEENGR-------------------------------------   88 (297)
T ss_dssp             EEECCCSS-CEEEEEECCGGGCSEEEEEETTTEEEEEEBSSSC-------------------------------------
T ss_pred             EEEccccC-CeEEEEecCCCcCCEEEEEcCCCEEEEEEcCCCc-------------------------------------
Confidence            57899999 8999999874  8999999999999999987421                                     


Q ss_pred             CcCcccccccccCCeEEEEEecC--CCcEEEEEcCCCeEEEEEcCCCCcceEEEeeccCCceeEEEeccCC---------
Q 021657           80 SVGPRGIYNGHEDTVEDVTFCPS--SAQEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLD---------  148 (309)
Q Consensus        80 ~~~~~~~~~~~~~~v~~~~~~~~--~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~---------  148 (309)
                       ...+..+.+|...|.+++|+|+  + .+|++++.|+.|++||++.........+.+|...|.+++|+| +         
T Consensus        89 -~~~~~~~~~h~~~v~~v~~~p~~~g-~~l~s~s~d~~v~~wd~~~~~~~~~~~~~~h~~~v~~~~~~p-~~~~~~~~~~  165 (297)
T 2pm7_B           89 -WSQIAVHAVHSASVNSVQWAPHEYG-PMLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAP-ATIEEDGEHN  165 (297)
T ss_dssp             -BCCCEEECCCSSCEEEEEECCGGGC-SEEEEEETTSEEEEEEBCSSSCBCCEEEECCSSCEEEEEECC-CC--------
T ss_pred             -eEEEEEeecCCCceeEEEeCcCCCC-cEEEEEECCCcEEEEEecCCCceeeeeeecccCccceEeecC-CcccccccCC
Confidence             1223445679999999999997  5 789999999999999998764323456778999999999999 5         


Q ss_pred             ----CCeEEEEcCCCcEEEEecCCCCCCCCCC----ceeeeccCCCCeeEEEEecCC--CcEEEEecCCCcEEEEeCCcc
Q 021657          149 ----DNLILTGSADNSVRMFDRRNLTSNGVGS----PINKFEGHSAAVLCVQWSPDK--SSVFGSSAEDGLLNIWDYEKV  218 (309)
Q Consensus       149 ----~~~l~~~~~dg~i~i~d~~~~~~~~~~~----~~~~~~~~~~~v~~~~~~~~~--~~l~~~~~~dg~i~iwd~~~~  218 (309)
                          +++|++|+.|+.|++||+++      ..    ....+.+|...|.+++|+|++  ..+||+++.|+.|++||++..
T Consensus       166 ~~~~~~~l~sgs~D~~v~lwd~~~------~~~~~~~~~~l~~H~~~V~~v~~sp~~~~~~~las~s~D~~v~iWd~~~~  239 (297)
T 2pm7_B          166 GTKESRKFVTGGADNLVKIWKYNS------DAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYMASVSQDRTCIIWTQDNE  239 (297)
T ss_dssp             ----CCEEEEEETTSCEEEEEEET------TTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEEETTSCEEEEEESST
T ss_pred             CCCCcceEEEEcCCCcEEEEEEcC------CCceEEEEEEecCCCCceEEEEECCCCCCceEEEEEECCCcEEEEEeCCC
Confidence                47999999999999999987      44    566788999999999999996  346789999999999999762


Q ss_pred             cccccCCCCCcCCCCceeeeecCCCcceeeEEEccCCCeEEEEecCCCCCCCCCCeEEEEEcc
Q 021657          219 GKKVEQGPRTTNYPAGLFFQHAGHRDKVVDFHWNASDPWTVVSVSDDCDSTGGGGTLQIWRMS  281 (309)
Q Consensus       219 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~s~d~~s~~~dg~v~vw~~~  281 (309)
                      ....          .........|...|.+++|+|++..|+        +++.|+.|++|+..
T Consensus       240 ~~~~----------~~~~~~~~~~~~~v~~~~~s~~g~~la--------s~~~D~~v~lw~~~  284 (297)
T 2pm7_B          240 QGPW----------KKTLLKEEKFPDVLWRASWSLSGNVLA--------LSGGDNKVTLWKEN  284 (297)
T ss_dssp             TSCC----------EEEESSSSCCSSCEEEEEECSSSCCEE--------EEETTSCEEEEEEC
T ss_pred             CCcc----------ceeeeecccCCCcEEEEEECCCCCEEE--------EEcCCCcEEEEEEC
Confidence            1100          001112246788999999999888655        44455999999987

>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}

Probab=100.00  E-value=3.9e-38  Score=253.94  Aligned_cols=241  Identities=22%  Similarity=0.307  Sum_probs=193.0

Q ss_pred             ccCCCCCcceEEEEECCCCCEEEEecCCCcEEEEeCCccccccccC----------CccccccCCCCceeecCCCCCCCC
Q 021657            3 ILTGHQDNAEFALAMCPTEPYVLSGGKDKSVVLWSIQDHITSSATD----------PATAKSAGSSGSIIKQSPKPGDGN   72 (309)
Q Consensus         3 ~l~~H~~~~V~~~~~~~~~~~l~t~~~dg~i~vwd~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~   72 (309)
                      .+..|.. .|.+++|+|++.+|++|+.|+.+++|++..........          ...........  ..+..+..++.
T Consensus       101 ~~~~~~~-~v~~~~~sp~g~~lasg~~d~~i~v~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~--~~l~t~s~D~~  177 (354)
T 2pbi_B          101 AVTMPCT-WVMACAYAPSGCAIACGGLDNKCSVYPLTFDKNENMAAKKKSVAMHTNYLSACSFTNSD--MQILTASGDGT  177 (354)
T ss_dssp             EEECSSS-CCCEEEECTTSSEEEEESTTSEEEEEECCCCTTCCSGGGCEEEEECSSCEEEEEECSSS--SEEEEEETTSE
T ss_pred             EEecCCC-CEEEEEECCCCCEEEEeeCCCCEEEEEEeccccccccccceeeeccCCcEEEEEEeCCC--CEEEEEeCCCc
Confidence            4556777 79999999999999999999999999986532111100          00111111111  12334456889


Q ss_pred             cccCCCCCcCcccccccccCCeEEEEEecCC-CcEEEEEcCCCeEEEEEcCCCCcceEEEeeccCCceeEEEeccCCCCe
Q 021657           73 DKAADGPSVGPRGIYNGHEDTVEDVTFCPSS-AQEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNL  151 (309)
Q Consensus        73 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~  151 (309)
                      +++|+..+.+.+..+.+|...|.++.|+|+. +.+|++|+.||.|++||+++++  ....+..|...|.+++|+| ++.+
T Consensus       178 v~lwd~~~~~~~~~~~~h~~~v~~~~~~~~~~g~~l~sgs~Dg~v~~wd~~~~~--~~~~~~~h~~~v~~v~~~p-~~~~  254 (354)
T 2pbi_B          178 CALWDVESGQLLQSFHGHGADVLCLDLAPSETGNTFVSGGCDKKAMVWDMRSGQ--CVQAFETHESDVNSVRYYP-SGDA  254 (354)
T ss_dssp             EEEEETTTCCEEEEEECCSSCEEEEEECCCSSCCEEEEEETTSCEEEEETTTCC--EEEEECCCSSCEEEEEECT-TSSE
T ss_pred             EEEEeCCCCeEEEEEcCCCCCeEEEEEEeCCCCCEEEEEeCCCeEEEEECCCCc--EEEEecCCCCCeEEEEEeC-CCCE
Confidence            9999999999999999999999999998852 2789999999999999999888  6778889999999999999 9999


Q ss_pred             EEEEcCCCcEEEEecCCCCCCCCCCceeeeccC--CCCeeEEEEecCCCcEEEEecCCCcEEEEeCCcccccccCCCCCc
Q 021657          152 ILTGSADNSVRMFDRRNLTSNGVGSPINKFEGH--SAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTT  229 (309)
Q Consensus       152 l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~--~~~v~~~~~~~~~~~l~~~~~~dg~i~iwd~~~~~~~~~~~~~~~  229 (309)
                      |++|+.|++|++||++.      .+.+..+..+  ...+.+++|+|++.. +++|+.|+.|++||+..            
T Consensus       255 l~s~s~D~~v~lwd~~~------~~~~~~~~~~~~~~~~~~~~~s~~g~~-l~~g~~d~~i~vwd~~~------------  315 (354)
T 2pbi_B          255 FASGSDDATCRLYDLRA------DREVAIYSKESIIFGASSVDFSLSGRL-LFAGYNDYTINVWDVLK------------  315 (354)
T ss_dssp             EEEEETTSCEEEEETTT------TEEEEEECCTTCCSCEEEEEECTTSSE-EEEEETTSCEEEEETTT------------
T ss_pred             EEEEeCCCeEEEEECCC------CcEEEEEcCCCcccceeEEEEeCCCCE-EEEEECCCcEEEEECCC------------
Confidence            99999999999999998      6666555433  347899999999995 67999999999999977            


Q ss_pred             CCCCceeeeecCCCcceeeEEEccCCCeEEEEecCCCCCCCCCCeEEEEE
Q 021657          230 NYPAGLFFQHAGHRDKVVDFHWNASDPWTVVSVSDDCDSTGGGGTLQIWR  279 (309)
Q Consensus       230 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~s~d~~s~~~dg~v~vw~  279 (309)
                         ...+..+.+|...|.+++|+|++.+++        +|+.|++|++|+
T Consensus       316 ---~~~~~~l~~h~~~v~~l~~spdg~~l~--------sgs~D~~v~vW~  354 (354)
T 2pbi_B          316 ---GSRVSILFGHENRVSTLRVSPDGTAFC--------SGSWDHTLRVWA  354 (354)
T ss_dssp             ---CSEEEEECCCSSCEEEEEECTTSSCEE--------EEETTSEEEEEC
T ss_pred             ---CceEEEEECCCCcEEEEEECCCCCEEE--------EEcCCCCEEecC
Confidence               345567789999999999999888655        555559999996

>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A

Probab=100.00  E-value=1.7e-37  Score=254.77  Aligned_cols=238  Identities=21%  Similarity=0.403  Sum_probs=194.9

Q ss_pred             cccCCCCCcceEEEEECC-CCCEEEEecCCCcEEEEeCCccccccccCCccccccCCCCceeecCCCCCCCCcccCCCCC
Q 021657            2 EILTGHQDNAEFALAMCP-TEPYVLSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPS   80 (309)
Q Consensus         2 ~~l~~H~~~~V~~~~~~~-~~~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (309)
                      ..+.+|.+ .|++++|+| ++++|++|+.||+|+|||+.++....                                 ..
T Consensus        75 ~~~~~h~~-~V~~~~~~p~~~~~l~s~s~dg~v~vw~~~~~~~~~---------------------------------~~  120 (402)
T 2aq5_A           75 PLVCGHTA-PVLDIAWCPHNDNVIASGSEDCTVMVWEIPDGGLVL---------------------------------PL  120 (402)
T ss_dssp             CCBCCCSS-CEEEEEECTTCTTEEEEEETTSEEEEEECCTTCCSS---------------------------------CB
T ss_pred             ceEecCCC-CEEEEEeCCCCCCEEEEEeCCCeEEEEEccCCCCcc---------------------------------cc
Confidence            45789999 899999999 99999999999999999998542111                                 01


Q ss_pred             cCcccccccccCCeEEEEEecCCCcEEEEEcCCCeEEEEEcCCCCcceEEEe--eccCCceeEEEeccCCCCeEEEEcCC
Q 021657           81 VGPRGIYNGHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPVIKVE--KAHDADLHCVDWNPLDDNLILTGSAD  158 (309)
Q Consensus        81 ~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~--~~~~~~v~~~~~~~~~~~~l~~~~~d  158 (309)
                      .+++..+.+|...|.+++|+|++..+|++++.||.|++||+++++  ....+  ..|...|.+++|+| ++.+|++++.|
T Consensus       121 ~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~--~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~d  197 (402)
T 2aq5_A          121 REPVITLEGHTKRVGIVAWHPTAQNVLLSAGCDNVILVWDVGTGA--AVLTLGPDVHPDTIYSVDWSR-DGALICTSCRD  197 (402)
T ss_dssp             CSCSEEEECCSSCEEEEEECSSBTTEEEEEETTSCEEEEETTTTE--EEEEECTTTCCSCEEEEEECT-TSSCEEEEETT
T ss_pred             CCceEEecCCCCeEEEEEECcCCCCEEEEEcCCCEEEEEECCCCC--ccEEEecCCCCCceEEEEECC-CCCEEEEEecC
Confidence            134567788999999999999986799999999999999999877  56666  78999999999999 99999999999


Q ss_pred             CcEEEEecCCCCCCCCCCceeee-ccCCCC-eeEEEEecCCCcEEEEe---cCCCcEEEEeCCcccccccCCCCCcCCCC
Q 021657          159 NSVRMFDRRNLTSNGVGSPINKF-EGHSAA-VLCVQWSPDKSSVFGSS---AEDGLLNIWDYEKVGKKVEQGPRTTNYPA  233 (309)
Q Consensus       159 g~i~i~d~~~~~~~~~~~~~~~~-~~~~~~-v~~~~~~~~~~~l~~~~---~~dg~i~iwd~~~~~~~~~~~~~~~~~~~  233 (309)
                      |.|++||+++      ++.+..+ ..|... +.+++|+|++.. +++|   +.|+.|++||++......           
T Consensus       198 ~~i~iwd~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~-l~~g~~~~~d~~i~iwd~~~~~~~~-----------  259 (402)
T 2aq5_A          198 KRVRVIEPRK------GTVVAEKDRPHEGTRPVHAVFVSEGKI-LTTGFSRMSERQVALWDTKHLEEPL-----------  259 (402)
T ss_dssp             SEEEEEETTT------TEEEEEEECSSCSSSCCEEEECSTTEE-EEEEECTTCCEEEEEEETTBCSSCS-----------
T ss_pred             CcEEEEeCCC------CceeeeeccCCCCCcceEEEEcCCCcE-EEEeccCCCCceEEEEcCccccCCc-----------
Confidence            9999999998      8888888 677765 899999999984 6688   789999999998733211           


Q ss_pred             ceeeeecCCCcceeeEEEccCCCeEEEEecCCCCCCCCCCeEEEEEccccccCChhhH-hHhhhcc--cceEEEeeeCC
Q 021657          234 GLFFQHAGHRDKVVDFHWNASDPWTVVSVSDDCDSTGGGGTLQIWRMSDLIYRPQDEV-LAELEKF--KAHVISCTSKP  309 (309)
Q Consensus       234 ~~~~~~~~~~~~v~~~~~~~~~~~~~~s~s~d~~s~~~dg~v~vw~~~~~~~~~~~~~-~~~~~~h--~~~v~~~~~~P  309 (309)
                        ......|...+.+++|+|++..++++++.|       |.|++||+.      .+++ +..+..|  ..+|.+++|+|
T Consensus       260 --~~~~~~~~~~v~~~~~s~~~~~l~~~g~~d-------g~i~i~d~~------~~~~~~~~l~~~~~~~~v~~~~~sp  323 (402)
T 2aq5_A          260 --SLQELDTSSGVLLPFFDPDTNIVYLCGKGD-------SSIRYFEIT------SEAPFLHYLSMFSSKESQRGMGYMP  323 (402)
T ss_dssp             --EEEECCCCSSCEEEEEETTTTEEEEEETTC-------SCEEEEEEC------SSTTCEEEEEEECCSSCCSEEEECC
T ss_pred             --eEEeccCCCceeEEEEcCCCCEEEEEEcCC-------CeEEEEEec------CCCcceEeecccccCCcccceEEec
Confidence              112234677899999999999888766555       999999998      3442 4445444  58999999987

>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a

Probab=100.00  E-value=2.2e-37  Score=248.45  Aligned_cols=233  Identities=25%  Similarity=0.406  Sum_probs=193.1

Q ss_pred             cccCCCCCcceEEEEECCC-CCEEEEecCCCcEEEEeCCccccccccCCccccccCCCCceeecCCCCCCCCcccCCCCC
Q 021657            2 EILTGHQDNAEFALAMCPT-EPYVLSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPS   80 (309)
Q Consensus         2 ~~l~~H~~~~V~~~~~~~~-~~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (309)
                      .+|+||.+ .|++|+|+|+ +++|+||+.||+|+|||+.+...                                   ..
T Consensus        32 ~tL~GH~~-~V~~v~~sp~~~~~l~S~s~D~~i~vWd~~~~~~-----------------------------------~~   75 (340)
T 4aow_A           32 GTLKGHNG-WVTQIATTPQFPDMILSASRDKTIIMWKLTRDET-----------------------------------NY   75 (340)
T ss_dssp             EEECCCSS-CEEEEEECTTCTTEEEEEETTSCEEEEEECCSSS-----------------------------------CS
T ss_pred             EEECCccC-CEEEEEEeCCCCCEEEEEcCCCeEEEEECCCCCc-----------------------------------cc
Confidence            36899999 8999999997 68999999999999999975321                                   12


Q ss_pred             cCcccccccccCCeEEEEEecCCCcEEEEEcCCCeEEEEEcCCCCcceEEEeeccCCceeEEEeccCCCCeEEEEcCCCc
Q 021657           81 VGPRGIYNGHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNS  160 (309)
Q Consensus        81 ~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~  160 (309)
                      ..+...+.+|...|.+++|+|++ .+|++++.|+.|++|+.....  .......+...+..+.+++ .+.+|++++.|+.
T Consensus        76 ~~~~~~l~~h~~~V~~~~~s~dg-~~l~s~~~d~~i~~~~~~~~~--~~~~~~~~~~~~~~~~~~~-~~~~l~s~s~d~~  151 (340)
T 4aow_A           76 GIPQRALRGHSHFVSDVVISSDG-QFALSGSWDGTLRLWDLTTGT--TTRRFVGHTKDVLSVAFSS-DNRQIVSGSRDKT  151 (340)
T ss_dssp             EEEEEEECCCSSCEEEEEECTTS-SEEEEEETTSEEEEEETTTTE--EEEEEECCSSCEEEEEECT-TSSCEEEEETTSC
T ss_pred             ceeeEEEeCCCCCEEEEEECCCC-CEEEEEcccccceEEeecccc--eeeeecCCCCceeEEEEee-cCccceeecCCCe
Confidence            23456678899999999999998 889999999999999998776  5666677888899999999 8999999999999


Q ss_pred             EEEEecCCCCCCCCCCceeeeccCCCCeeEEEEecCCCc-EEEEecCCCcEEEEeCCcccccccCCCCCcCCCCceeeee
Q 021657          161 VRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWSPDKSS-VFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQH  239 (309)
Q Consensus       161 i~i~d~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~-l~~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~  239 (309)
                      +++||+...     .........|...+..++|++++.. ++++++.|+.|++||++.               ......+
T Consensus       152 ~~~~d~~~~-----~~~~~~~~~~~~~v~~~~~~~~~~~~~~~s~~~d~~i~i~d~~~---------------~~~~~~~  211 (340)
T 4aow_A          152 IKLWNTLGV-----CKYTVQDESHSEWVSCVRFSPNSSNPIIVSCGWDKLVKVWNLAN---------------CKLKTNH  211 (340)
T ss_dssp             EEEECTTSC-----EEEEECSSSCSSCEEEEEECSCSSSCEEEEEETTSCEEEEETTT---------------TEEEEEE
T ss_pred             EEEEEeCCC-----ceEEEEeccccCcccceEEccCCCCcEEEEEcCCCEEEEEECCC---------------CceeeEe
Confidence            999998862     3344556778899999999987643 567899999999999987               4456677


Q ss_pred             cCCCcceeeEEEccCCCeEEEEecCCCCCCCCCCeEEEEEccccccCChhhHhHhhhcccceEEEeeeCC
Q 021657          240 AGHRDKVVDFHWNASDPWTVVSVSDDCDSTGGGGTLQIWRMSDLIYRPQDEVLAELEKFKAHVISCTSKP  309 (309)
Q Consensus       240 ~~~~~~v~~~~~~~~~~~~~~s~s~d~~s~~~dg~v~vw~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~P  309 (309)
                      .+|..+|++++|+|++.+++        +|+.||.|++||+.      ..+++..+. +...|.++.|+|
T Consensus       212 ~~h~~~v~~~~~s~~~~~l~--------s~s~Dg~i~iwd~~------~~~~~~~~~-~~~~v~~~~~~~  266 (340)
T 4aow_A          212 IGHTGYLNTVTVSPDGSLCA--------SGGKDGQAMLWDLN------EGKHLYTLD-GGDIINALCFSP  266 (340)
T ss_dssp             CCCSSCEEEEEECTTSSEEE--------EEETTCEEEEEETT------TTEEEEEEE-CSSCEEEEEECS
T ss_pred             cCCCCcEEEEEECCCCCEEE--------EEeCCCeEEEEEec------cCceeeeec-CCceEEeeecCC
Confidence            89999999999999887655        44455999999999      566666666 446888988876

>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}

Probab=100.00  E-value=1.2e-37  Score=272.41  Aligned_cols=231  Identities=24%  Similarity=0.369  Sum_probs=191.2

Q ss_pred             ccCCCCCcceEEEEECCCC-CEEEEecCCCcEEEEeCCccccccccCCccccccCCCCceeecCCCCCCCCcccCCCCCc
Q 021657            3 ILTGHQDNAEFALAMCPTE-PYVLSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSV   81 (309)
Q Consensus         3 ~l~~H~~~~V~~~~~~~~~-~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (309)
                      .|++|.+ .|++++|+|++ ++|+||+.|++|++||+......                                   ..
T Consensus       377 ~l~~H~~-~V~~v~~~~~~~~~l~s~s~D~~i~~W~~~~~~~~-----------------------------------~~  420 (694)
T 3dm0_A          377 TMRAHTD-MVTAIATPIDNADIIVSASRDKSIILWKLTKDDKA-----------------------------------YG  420 (694)
T ss_dssp             EEECCSS-CEEEEECCTTCCSEEEEEETTSEEEEEECCCSTTC-----------------------------------SC
T ss_pred             hcccCCc-eeEEEEecCCCCCEEEEEeCCCcEEEEEccCCCcc-----------------------------------cc
Confidence            5889999 89999999864 78999999999999998742110                                   11


Q ss_pred             CcccccccccCCeEEEEEecCCCcEEEEEcCCCeEEEEEcCCCCcceEEEeeccCCceeEEEeccCCCCeEEEEcCCCcE
Q 021657           82 GPRGIYNGHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSV  161 (309)
Q Consensus        82 ~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i  161 (309)
                      .....+.+|...|.+++|+|++ .+|++|+.||.|++||+.+++  ....+.+|...|.+++|+| ++++|++++.|++|
T Consensus       421 ~~~~~~~~h~~~v~~v~~s~~g-~~l~sgs~Dg~v~vwd~~~~~--~~~~~~~h~~~v~~~~~s~-~~~~l~s~s~D~~i  496 (694)
T 3dm0_A          421 VAQRRLTGHSHFVEDVVLSSDG-QFALSGSWDGELRLWDLAAGV--STRRFVGHTKDVLSVAFSL-DNRQIVSASRDRTI  496 (694)
T ss_dssp             EEEEEEECCSSCEEEEEECTTS-SEEEEEETTSEEEEEETTTTE--EEEEEECCSSCEEEEEECT-TSSCEEEEETTSCE
T ss_pred             cccceecCCCCcEEEEEECCCC-CEEEEEeCCCcEEEEECCCCc--ceeEEeCCCCCEEEEEEeC-CCCEEEEEeCCCEE
Confidence            2235678899999999999998 889999999999999998887  6778889999999999999 99999999999999


Q ss_pred             EEEecCCCCCCCCCCcee---eeccCCCCeeEEEEecCCC-cEEEEecCCCcEEEEeCCcccccccCCCCCcCCCCceee
Q 021657          162 RMFDRRNLTSNGVGSPIN---KFEGHSAAVLCVQWSPDKS-SVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFF  237 (309)
Q Consensus       162 ~i~d~~~~~~~~~~~~~~---~~~~~~~~v~~~~~~~~~~-~l~~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~  237 (309)
                      ++||...      .....   ...+|...|.+++|+|++. .++++++.|+.|++||++.               ..+..
T Consensus       497 ~iwd~~~------~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d~~v~vwd~~~---------------~~~~~  555 (694)
T 3dm0_A          497 KLWNTLG------ECKYTISEGGEGHRDWVSCVRFSPNTLQPTIVSASWDKTVKVWNLSN---------------CKLRS  555 (694)
T ss_dssp             EEECTTS------CEEEEECSSTTSCSSCEEEEEECSCSSSCEEEEEETTSCEEEEETTT---------------CCEEE
T ss_pred             EEEECCC------CcceeeccCCCCCCCcEEEEEEeCCCCcceEEEEeCCCeEEEEECCC---------------CcEEE
Confidence            9999865      22222   1246788899999999873 3577999999999999987               34566


Q ss_pred             eecCCCcceeeEEEccCCCeEEEEecCCCCCCCCCCeEEEEEccccccCChhhHhHhhhcccceEEEeeeCC
Q 021657          238 QHAGHRDKVVDFHWNASDPWTVVSVSDDCDSTGGGGTLQIWRMSDLIYRPQDEVLAELEKFKAHVISCTSKP  309 (309)
Q Consensus       238 ~~~~~~~~v~~~~~~~~~~~~~~s~s~d~~s~~~dg~v~vw~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~P  309 (309)
                      .+.+|...|++++|+|++.+++        +|+.||.|++||+.      +++++..+. +...|.+++|+|
T Consensus       556 ~~~~h~~~v~~v~~spdg~~l~--------sg~~Dg~i~iwd~~------~~~~~~~~~-~~~~v~~~~~sp  612 (694)
T 3dm0_A          556 TLAGHTGYVSTVAVSPDGSLCA--------SGGKDGVVLLWDLA------EGKKLYSLE-ANSVIHALCFSP  612 (694)
T ss_dssp             EECCCSSCEEEEEECTTSSEEE--------EEETTSBCEEEETT------TTEEEECCB-CSSCEEEEEECS
T ss_pred             EEcCCCCCEEEEEEeCCCCEEE--------EEeCCCeEEEEECC------CCceEEEec-CCCcEEEEEEcC
Confidence            7889999999999999887654        44555999999998      566666665 456799999987

>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X

Probab=100.00  E-value=2.8e-38  Score=259.00  Aligned_cols=266  Identities=14%  Similarity=0.162  Sum_probs=207.5

Q ss_pred             cccCCCCCcceEEEEECCCCCEEEEecCCCcEEEEeCCccc------cccccCC----ccccccCCC----C-ceeecCC
Q 021657            2 EILTGHQDNAEFALAMCPTEPYVLSGGKDKSVVLWSIQDHI------TSSATDP----ATAKSAGSS----G-SIIKQSP   66 (309)
Q Consensus         2 ~~l~~H~~~~V~~~~~~~~~~~l~t~~~dg~i~vwd~~~~~------~~~~~~~----~~~~~~~~~----~-~~~~~~~   66 (309)
                      +.|++|.+ +|++++|+|  ++|++|+.||.|++||+.+..      .......    .........    . ....+..
T Consensus        10 ~~~~~h~~-~i~~~~~~~--~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~g~~~~~l~s   86 (397)
T 1sq9_A           10 NAGKAHDA-DIFSVSACN--SFTVSCSGDGYLKVWDNKLLDNENPKDKSYSHFVHKSGLHHVDVLQAIERDAFELCLVAT   86 (397)
T ss_dssp             EESSCSSS-CEEEEEECS--SEEEEEETTSEEEEEESBCCTTCCGGGGEEEEECCTTCEEEEEEEEEEETTTEEEEEEEE
T ss_pred             hhhhhhhc-CeEEEEecC--CeEEEEcCCCEEEEEECCCcccccCCCcceEEecCCCcEEEEEEecccccCCccccEEEE
Confidence            46889999 899999998  899999999999999998765      1111111    011111111    1 0023334


Q ss_pred             CCCCCCcccCCCCCcCc-----ccccccc-----cCCeEEEEEe----cCCCcE-EEEEcCCCeEEEEEcCC------CC
Q 021657           67 KPGDGNDKAADGPSVGP-----RGIYNGH-----EDTVEDVTFC----PSSAQE-FCSVGDDSCLILWDARV------GT  125 (309)
Q Consensus        67 ~~~~~~~~~~~~~~~~~-----~~~~~~~-----~~~v~~~~~~----~~~~~~-l~s~~~dg~i~iwd~~~------~~  125 (309)
                      +..++.+.+|+..+.+.     ...+..|     ...|.+++|+    |++ .+ |++++.||.|++||++.      .+
T Consensus        87 ~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~-~~~l~~~~~dg~i~iwd~~~~~~~~~~~  165 (397)
T 1sq9_A           87 TSFSGDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWALKWGASNDRLL-SHRLVATDVKGTTYIWKFHPFADESNSL  165 (397)
T ss_dssp             EETTSCEEEEEEEECTTTCCEEEEEECCSCTTGGGSCEEEEEEECCC-----CEEEEEEETTSCEEEEEEESSSSHHHHT
T ss_pred             EcCCCCEEEEEccCCcccccccceeecccccccCCCcEEEEEEeeccCCCC-ceEEEEEeCCCcEEEEeCCccccccccc
Confidence            45678999999888877     7888888     5999999999    988 77 99999999999999987      44


Q ss_pred             cce---EEEe-------eccCCceeEEEeccCCCCeEEEEcCCCcEEEEecCCCCCCCCCCceeeecc---C---CCCee
Q 021657          126 SPV---IKVE-------KAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEG---H---SAAVL  189 (309)
Q Consensus       126 ~~~---~~~~-------~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~---~---~~~v~  189 (309)
                      ...   ...+       ..|...|.+++|+| ++ ++++++.||.|++||+++      .+.+..+..   |   ...|.
T Consensus       166 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~-~l~~~~~dg~i~i~d~~~------~~~~~~~~~~~~h~~~~~~i~  237 (397)
T 1sq9_A          166 TLNWSPTLELQGTVESPMTPSQFATSVDISE-RG-LIATGFNNGTVQISELST------LRPLYNFESQHSMINNSNSIR  237 (397)
T ss_dssp             TTCCCCEEEEEEEECCSSSSCCCCCEEEECT-TS-EEEEECTTSEEEEEETTT------TEEEEEEECCC---CCCCCEE
T ss_pred             eeeccCcceeeeeeccccCCCCCceEEEECC-Cc-eEEEEeCCCcEEEEECCC------CceeEEEeccccccccCCccc
Confidence            211   0134       45888999999999 88 999999999999999998      888899988   8   99999


Q ss_pred             EEEEecCCCcEEEEecCC---CcEEEEeCCcccccccCCCCCcCCCCceeeeecC-------------CCcceeeEEEcc
Q 021657          190 CVQWSPDKSSVFGSSAED---GLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAG-------------HRDKVVDFHWNA  253 (309)
Q Consensus       190 ~~~~~~~~~~l~~~~~~d---g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------~~~~v~~~~~~~  253 (309)
                      +++|+|++.+ |++++.|   +.|++||++.               ...+..+.+             |...|.+++|+|
T Consensus       238 ~i~~~~~~~~-l~~~~~d~~~g~i~i~d~~~---------------~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~  301 (397)
T 1sq9_A          238 SVKFSPQGSL-LAIAHDSNSFGCITLYETEF---------------GERIGSLSVPTHSSQASLGEFAHSSWVMSLSFND  301 (397)
T ss_dssp             EEEECSSTTE-EEEEEEETTEEEEEEEETTT---------------CCEEEEECBC--------CCBSBSSCEEEEEECS
T ss_pred             eEEECCCCCE-EEEEecCCCCceEEEEECCC---------------CcccceeccCcccccccccccccCCcEEEEEECC
Confidence            9999999995 6688889   9999999987               234455556             899999999999


Q ss_pred             CCCeEEEEecCCCCCCCCCCeEEEEEccccccCChhhHhHhhh------cc---------------cceEEEeeeCC
Q 021657          254 SDPWTVVSVSDDCDSTGGGGTLQIWRMSDLIYRPQDEVLAELE------KF---------------KAHVISCTSKP  309 (309)
Q Consensus       254 ~~~~~~~s~s~d~~s~~~dg~v~vw~~~~~~~~~~~~~~~~~~------~h---------------~~~v~~~~~~P  309 (309)
                      ++.+++        +++.||.|++||+.      .++++..+.      +|               ...|.+++|+|
T Consensus       302 ~~~~l~--------~~~~dg~i~iwd~~------~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~v~~~~~~~  364 (397)
T 1sq9_A          302 SGETLC--------SAGWDGKLRFWDVK------TKERITTLNMHCDDIEIEEDILAVDEHGDSLAEPGVFDVKFLK  364 (397)
T ss_dssp             SSSEEE--------EEETTSEEEEEETT------TTEEEEEEECCGGGCSSGGGCCCBCTTSCBCSSCCEEEEEEEC
T ss_pred             CCCEEE--------EEeCCCeEEEEEcC------CCceeEEEecccCcccchhhhhccccccccccCCceeEEEecc
Confidence            888655        44455999999998      677777787      77               99999999987

>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A

Probab=100.00  E-value=1.5e-37  Score=245.60  Aligned_cols=246  Identities=17%  Similarity=0.222  Sum_probs=197.9

Q ss_pred             cccCCCCCcceEEEEECCCCCEEEEecCCCcEEEEeCCccccccccCC----ccccccCCCCceeecCCCCCCCCcccCC
Q 021657            2 EILTGHQDNAEFALAMCPTEPYVLSGGKDKSVVLWSIQDHITSSATDP----ATAKSAGSSGSIIKQSPKPGDGNDKAAD   77 (309)
Q Consensus         2 ~~l~~H~~~~V~~~~~~~~~~~l~t~~~dg~i~vwd~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~   77 (309)
                      +.+++|.. +|.+++|+|++++|++|+.|++|++||+.++........    ..........  ..+..+..++.+++|+
T Consensus        49 ~~~~~~~~-~v~~~~~~~~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~--~~l~sgs~D~~v~lWd  125 (304)
T 2ynn_A           49 RSIQVTET-PVRAGKFIARKNWIIVGSDDFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTK--PYVLSGSDDLTVKLWN  125 (304)
T ss_dssp             EEEECCSS-CEEEEEEEGGGTEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECSSS--SEEEEEETTSCEEEEE
T ss_pred             EEeeccCC-cEEEEEEeCCCCEEEEECCCCEEEEEECCCCcEEEEEeCCCCcEEEEEEcCCC--CEEEEECCCCeEEEEE
Confidence            46778988 899999999999999999999999999988754332221    1111112121  2334566789999999


Q ss_pred             CCCc-CcccccccccCCeEEEEEecCCCcEEEEEcCCCeEEEEEcCCCCcceEEEeeccCCceeEEEeccC-CCCeEEEE
Q 021657           78 GPSV-GPRGIYNGHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPL-DDNLILTG  155 (309)
Q Consensus        78 ~~~~-~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~-~~~~l~~~  155 (309)
                      ..+. .....+.+|...|.+++|+|.++.+|++|+.|++|++||+++... .......|...+..++|+|. ++.+|++|
T Consensus       126 ~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~l~sgs~D~~v~iwd~~~~~~-~~~~~~~~~~~v~~~~~~~~~~~~~l~s~  204 (304)
T 2ynn_A          126 WENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTP-NFTLTTGQERGVNYVDYYPLPDKPYMITA  204 (304)
T ss_dssp             GGGTTEEEEEECCCCSCEEEEEECTTCTTEEEEEETTSEEEEEETTCSSC-SEEEECCCTTCEEEEEECCSTTCCEEEEE
T ss_pred             CCCCcchhhhhcccCCcEEEEEECCCCCCEEEEEeCCCeEEEEECCCCCc-cceeccCCcCcEEEEEEEEcCCCCEEEEE
Confidence            8876 445678899999999999996558999999999999999987663 33344566788999999862 56799999


Q ss_pred             cCCCcEEEEecCCCCCCCCCCceeeeccCCCCeeEEEEecCCCcEEEEecCCCcEEEEeCCcccccccCCCCCcCCCCce
Q 021657          156 SADNSVRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGL  235 (309)
Q Consensus       156 ~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~  235 (309)
                      +.|+.|++||+++      ++++..+.+|...|.+++|+|+++. |++|+.||.|++||+++               .++
T Consensus       205 s~D~~i~iWd~~~------~~~~~~~~~h~~~v~~~~~~p~~~~-l~s~s~Dg~i~iWd~~~---------------~~~  262 (304)
T 2ynn_A          205 SDDLTIKIWDYQT------KSCVATLEGHMSNVSFAVFHPTLPI-IISGSEDGTLKIWNSST---------------YKV  262 (304)
T ss_dssp             ETTSEEEEEETTT------TEEEEEEECCSSCEEEEEECSSSSE-EEEEETTSCEEEEETTT---------------CCE
T ss_pred             cCCCeEEEEeCCC------CccceeeCCCCCCEEEEEECCCCCE-EEEEcCCCeEEEEECCC---------------Cce
Confidence            9999999999998      8899999999999999999999995 67999999999999987               455


Q ss_pred             eeeecCCCcceeeEEEccCCCe-EEEEecCCCCCCCCCCeEEEEEcc
Q 021657          236 FFQHAGHRDKVVDFHWNASDPW-TVVSVSDDCDSTGGGGTLQIWRMS  281 (309)
Q Consensus       236 ~~~~~~~~~~v~~~~~~~~~~~-~~~s~s~d~~s~~~dg~v~vw~~~  281 (309)
                      ...+..|...+.+++|+|++.. +++++++|        .+.+|++.
T Consensus       263 ~~~~~~~~~~~~~~~~~~~~~~~~~asg~~~--------g~~~~~~~  301 (304)
T 2ynn_A          263 EKTLNVGLERSWCIATHPTGRKNYIASGFDN--------GFTVLSLG  301 (304)
T ss_dssp             EEEECCSSSSEEEEEECTTCGGGCEEEEETT--------EEEEEECC
T ss_pred             eeeccCCCccEEEEEECCCCCceEEEEecCC--------ceEEEEec
Confidence            6677889999999999998865 46666554        78899887

>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C

Probab=100.00  E-value=2.1e-37  Score=251.57  Aligned_cols=246  Identities=13%  Similarity=0.147  Sum_probs=197.1

Q ss_pred             cccCCCCCcceEEEEECCCCCEEEEecCCCcEEEEeCCccccccccCCccccccCCCCceeecCCCCCCCCcccCCCCCc
Q 021657            2 EILTGHQDNAEFALAMCPTEPYVLSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSV   81 (309)
Q Consensus         2 ~~l~~H~~~~V~~~~~~~~~~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (309)
                      +.+..|.+ +|++++|+|++++|++|+.|+.|++||+.++.                                      .
T Consensus         2 ~~~~~~~~-~i~~~~~s~~~~~l~~~~~d~~v~i~~~~~~~--------------------------------------~   42 (372)
T 1k8k_C            2 AYHSFLVE-PISCHAWNKDRTQIAICPNNHEVHIYEKSGNK--------------------------------------W   42 (372)
T ss_dssp             CEEESCSS-CCCEEEECTTSSEEEEECSSSEEEEEEEETTE--------------------------------------E
T ss_pred             ceecccCC-CeEEEEECCCCCEEEEEeCCCEEEEEeCCCCc--------------------------------------E
Confidence            45677888 89999999999999999999999999987421                                      1


Q ss_pred             CcccccccccCCeEEEEEecCCCcEEEEEcCCCeEEEEEcCCCCcceEEEeeccCCceeEEEeccCCCCeEEEEcCCCcE
Q 021657           82 GPRGIYNGHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSV  161 (309)
Q Consensus        82 ~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i  161 (309)
                      +.+..+.+|...|.+++|+|++ .+|++++.||.|++||+.+++.........|...|.+++|+| ++++|++++.|+.|
T Consensus        43 ~~~~~~~~h~~~v~~~~~~~~~-~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~d~~v  120 (372)
T 1k8k_C           43 VQVHELKEHNGQVTGVDWAPDS-NRIVTCGTDRNAYVWTLKGRTWKPTLVILRINRAARCVRWAP-NEKKFAVGSGSRVI  120 (372)
T ss_dssp             EEEEEEECCSSCEEEEEEETTT-TEEEEEETTSCEEEEEEETTEEEEEEECCCCSSCEEEEEECT-TSSEEEEEETTSSE
T ss_pred             EeeeeecCCCCcccEEEEeCCC-CEEEEEcCCCeEEEEECCCCeeeeeEEeecCCCceeEEEECC-CCCEEEEEeCCCEE
Confidence            1456677899999999999998 889999999999999998776333444567899999999999 99999999999999


Q ss_pred             EEEecCCCCCCCCCCc---ee-eeccCCCCeeEEEEecCCCcEEEEecCCCcEEEEeCCcccccccCCCC---CcCCCCc
Q 021657          162 RMFDRRNLTSNGVGSP---IN-KFEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPR---TTNYPAG  234 (309)
Q Consensus       162 ~i~d~~~~~~~~~~~~---~~-~~~~~~~~v~~~~~~~~~~~l~~~~~~dg~i~iwd~~~~~~~~~~~~~---~~~~~~~  234 (309)
                      ++||++.      ...   .. ....|...|.+++|+|++.+ +++++.||.|++||++...........   .......
T Consensus       121 ~i~d~~~------~~~~~~~~~~~~~~~~~i~~~~~~~~~~~-l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~  193 (372)
T 1k8k_C          121 SICYFEQ------ENDWWVCKHIKKPIRSTVLSLDWHPNSVL-LAAGSCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGE  193 (372)
T ss_dssp             EEEEEET------TTTEEEEEEECTTCCSCEEEEEECTTSSE-EEEEETTSCEEEEECCCTTTSCCCCCBTTBSCCCTTC
T ss_pred             EEEEecC------CCcceeeeeeecccCCCeeEEEEcCCCCE-EEEEcCCCCEEEEEcccccccccccccccccccchhh
Confidence            9999998      442   22 33567889999999999985 679999999999998642211100000   0011235


Q ss_pred             eeeeecCCCcceeeEEEccCCCeEEEEecCCCCCCCCCCeEEEEEccccccCChhhHhHhhhcccceEEEeeeCC
Q 021657          235 LFFQHAGHRDKVVDFHWNASDPWTVVSVSDDCDSTGGGGTLQIWRMSDLIYRPQDEVLAELEKFKAHVISCTSKP  309 (309)
Q Consensus       235 ~~~~~~~~~~~v~~~~~~~~~~~~~~s~s~d~~s~~~dg~v~vw~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~P  309 (309)
                      .+..+.+|...|.+++|+|++.+++        +++.||.|++||+.      +++++..+..|..+|.+++|+|
T Consensus       194 ~~~~~~~~~~~v~~~~~~~~~~~l~--------~~~~d~~i~i~d~~------~~~~~~~~~~~~~~v~~~~~~~  254 (372)
T 1k8k_C          194 LMFESSSSCGWVHGVCFSANGSRVA--------WVSHDSTVCLADAD------KKMAVATLASETLPLLAVTFIT  254 (372)
T ss_dssp             EEEECCCCSSCEEEEEECSSSSEEE--------EEETTTEEEEEEGG------GTTEEEEEECSSCCEEEEEEEE
T ss_pred             heEecCCCCCeEEEEEECCCCCEEE--------EEeCCCEEEEEECC------CCceeEEEccCCCCeEEEEEec
Confidence            6667778999999999999887655        44455999999999      6788888999999999999986

>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B

Probab=100.00  E-value=2.8e-37  Score=255.47  Aligned_cols=251  Identities=18%  Similarity=0.354  Sum_probs=201.3

Q ss_pred             cCCCCCcceEEEEECCC-CCEEEEecCCCcEEEEeCCccccccccCCccccccCCCCceeecCCCCCCCCcccCCCCCcC
Q 021657            4 LTGHQDNAEFALAMCPT-EPYVLSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVG   82 (309)
Q Consensus         4 l~~H~~~~V~~~~~~~~-~~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   82 (309)
                      +.+|.+ .|++++|+|+ +.+|++++.||.|++||+........                              ......
T Consensus       124 ~~~h~~-~v~~l~~~p~~~~~lat~~~dg~V~vwd~~~~~~~~~------------------------------~~~~~~  172 (430)
T 2xyi_A          124 KINHEG-EVNRARYMPQNACVIATKTPSSDVLVFDYTKHPSKPE------------------------------PSGECQ  172 (430)
T ss_dssp             EEEESS-CCSEEEEETTEEEEEEEECSSSCEEEEEGGGSCSSCC------------------------------TTCCCC
T ss_pred             EEcCCC-cEEEEEECCCCCcEEEEECCCCcEEEEECCCcccccC------------------------------ccccCC
Confidence            456888 8999999997 67999999999999999975311100                              001234


Q ss_pred             cccccccccCCeEEEEEecCCCcEEEEEcCCCeEEEEEcCCCCcc-----eEEEeeccCCceeEEEeccCCCCeEEEEcC
Q 021657           83 PRGIYNGHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSP-----VIKVEKAHDADLHCVDWNPLDDNLILTGSA  157 (309)
Q Consensus        83 ~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~-----~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~  157 (309)
                      +...+.+|...|.+++|+|++..+|++|+.||.|++||+..+...     ....+..|...|.+++|+|.++.+|++++.
T Consensus       173 ~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~l~s~~~  252 (430)
T 2xyi_A          173 PDLRLRGHQKEGYGLSWNPNLNGYLLSASDDHTICLWDINATPKEHRVIDAKNIFTGHTAVVEDVAWHLLHESLFGSVAD  252 (430)
T ss_dssp             CSEEEECCSSCCCCEEECTTSTTEEEEECTTSCEEEEETTSCCBGGGEEECSEEECCCSSCEEEEEECSSCTTEEEEEET
T ss_pred             CcEEecCCCCCeEEEEeCCCCCCeEEEEeCCCeEEEEeCCCCCCCCceeccceeecCCCCCEeeeEEeCCCCCEEEEEeC
Confidence            566778899999999999998559999999999999999874321     134566899999999999966789999999


Q ss_pred             CCcEEEEecCCCCCCCCCCceeeeccCCCCeeEEEEecCCCcEEEEecCCCcEEEEeCCcccccccCCCCCcCCCCceee
Q 021657          158 DNSVRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFF  237 (309)
Q Consensus       158 dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~  237 (309)
                      ||.|++||+++...   .+++..+..|...|++++|+|++++++++|+.||.|++||++..+              ..+.
T Consensus       253 dg~i~i~d~~~~~~---~~~~~~~~~~~~~v~~i~~~p~~~~~l~tg~~dg~v~vwd~~~~~--------------~~~~  315 (430)
T 2xyi_A          253 DQKLMIWDTRNNNT---SKPSHTVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLK--------------LKLH  315 (430)
T ss_dssp             TSEEEEEETTCSCS---SSCSEEEECCSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCTT--------------SCSE
T ss_pred             CCeEEEEECCCCCC---CcceeEeecCCCCeEEEEeCCCCCCEEEEEeCCCeEEEEeCCCCC--------------CCeE
Confidence            99999999998311   257777888999999999999999888899999999999998732              2355


Q ss_pred             eecCCCcceeeEEEccCCCeEEEEecCCCCCCCCCCeEEEEEccccccCCh--------hhHhHhhhcccceEEEeeeCC
Q 021657          238 QHAGHRDKVVDFHWNASDPWTVVSVSDDCDSTGGGGTLQIWRMSDLIYRPQ--------DEVLAELEKFKAHVISCTSKP  309 (309)
Q Consensus       238 ~~~~~~~~v~~~~~~~~~~~~~~s~s~d~~s~~~dg~v~vw~~~~~~~~~~--------~~~~~~~~~h~~~v~~~~~~P  309 (309)
                      .+..|...|.+++|+|++..++++++.|       |.|++||+........        .+++..+.+|...|.+++|+|
T Consensus       316 ~~~~h~~~v~~i~~sp~~~~~l~s~~~d-------~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p  388 (430)
T 2xyi_A          316 SFESHKDEIFQVQWSPHNETILASSGTD-------RRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNP  388 (430)
T ss_dssp             EEECCSSCEEEEEECSSCTTEEEEEETT-------SCCEEEEGGGTTCCCCHHHHHHCCTTEEEECCCCSSCEEEEEECS
T ss_pred             EeecCCCCEEEEEECCCCCCEEEEEeCC-------CcEEEEeCCCCccccCccccccCCcceEEEcCCCCCCceEEEECC
Confidence            6778999999999999998888866666       9999999985221110        245666778999999999987

>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A

Probab=100.00  E-value=1.8e-37  Score=267.42  Aligned_cols=222  Identities=18%  Similarity=0.258  Sum_probs=186.0

Q ss_pred             CCCcceEEEEECCCCCEEEEecCCCcEEEEeCCccccccccCCccccccCCCCceeecCCCCCCCCcccCCCCCcCcccc
Q 021657            7 HQDNAEFALAMCPTEPYVLSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGI   86 (309)
Q Consensus         7 H~~~~V~~~~~~~~~~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   86 (309)
                      +.+ .+.+++|+|+|++|++++ ++.|++|++.+                                        .+....
T Consensus        17 ~~g-~~~~~~~spdg~~l~~~~-~~~v~l~~~~~----------------------------------------~~~~~~   54 (611)
T 1nr0_A           17 ARG-TAVVLGNTPAGDKIQYCN-GTSVYTVPVGS----------------------------------------LTDTEI   54 (611)
T ss_dssp             CTT-CCCCCEECTTSSEEEEEE-TTEEEEEETTC----------------------------------------SSCCEE
T ss_pred             ccC-ceeEEeeCCCCCEEEeCC-CCEEEEecCCC----------------------------------------cccCeE
Confidence            445 678999999999999988 56999999863                                        234556


Q ss_pred             cccccCCeEEEEEecCCCcEEEEEcCCCeEEEEEcCCCCcceEEEeeccCCceeEEEeccCCCCeEEEEcCC----CcEE
Q 021657           87 YNGHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSAD----NSVR  162 (309)
Q Consensus        87 ~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d----g~i~  162 (309)
                      +.+|...|++++|+|+| .+|++|+.||+|+|||+.+++......+..|...|.+++|+| +++.|++++.+    +.|+
T Consensus        55 ~~~h~~~v~~~~~spdg-~~lasg~~d~~v~lWd~~~~~~~~~~~~~~~~~~v~~v~fs~-dg~~l~~~~~~~~~~~~v~  132 (611)
T 1nr0_A           55 YTEHSHQTTVAKTSPSG-YYCASGDVHGNVRIWDTTQTTHILKTTIPVFSGPVKDISWDS-ESKRIAAVGEGRERFGHVF  132 (611)
T ss_dssp             ECCCSSCEEEEEECTTS-SEEEEEETTSEEEEEESSSTTCCEEEEEECSSSCEEEEEECT-TSCEEEEEECCSSCSEEEE
T ss_pred             ecCCCCceEEEEECCCC-cEEEEEeCCCCEEEeECCCCcceeeEeecccCCceEEEEECC-CCCEEEEEECCCCceeEEE
Confidence            78899999999999999 899999999999999997665445667788999999999999 99999988765    4688


Q ss_pred             EEecCCCCCCCCCCceeeeccCCCCeeEEEEecCCCcEEEEecCCCcEEEEeCCcccccccCCCCCcCCCCceeeeecCC
Q 021657          163 MFDRRNLTSNGVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGH  242 (309)
Q Consensus       163 i~d~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~  242 (309)
                      +||.        +..+..+.+|...|++++|+|++.+.+++|+.|+.|++||.+.               ..+...+.+|
T Consensus       133 ~wd~--------~~~~~~l~gh~~~v~~v~f~p~~~~~l~s~s~D~~v~lwd~~~---------------~~~~~~l~~H  189 (611)
T 1nr0_A          133 LFDT--------GTSNGNLTGQARAMNSVDFKPSRPFRIISGSDDNTVAIFEGPP---------------FKFKSTFGEH  189 (611)
T ss_dssp             ETTT--------CCBCBCCCCCSSCEEEEEECSSSSCEEEEEETTSCEEEEETTT---------------BEEEEEECCC
T ss_pred             EeeC--------CCCcceecCCCCCceEEEECCCCCeEEEEEeCCCeEEEEECCC---------------CeEeeeeccc
Confidence            8873        4566788999999999999999987678999999999999876               3456678899


Q ss_pred             CcceeeEEEccCCCeEEEEecCCCCCCCCCCeEEEEEccccccCChhhHhHhhh-------cccceEEEeeeCC
Q 021657          243 RDKVVDFHWNASDPWTVVSVSDDCDSTGGGGTLQIWRMSDLIYRPQDEVLAELE-------KFKAHVISCTSKP  309 (309)
Q Consensus       243 ~~~v~~~~~~~~~~~~~~s~s~d~~s~~~dg~v~vw~~~~~~~~~~~~~~~~~~-------~h~~~v~~~~~~P  309 (309)
                      ...|.+++|+|++.+ ++       +|+.|++|++||+.      +++++..+.       +|.+.|.+++|+|
T Consensus       190 ~~~V~~v~fspdg~~-la-------s~s~D~~i~lwd~~------~g~~~~~~~~~~~~~~~h~~~V~~v~~sp  249 (611)
T 1nr0_A          190 TKFVHSVRYNPDGSL-FA-------STGGDGTIVLYNGV------DGTKTGVFEDDSLKNVAHSGSVFGLTWSP  249 (611)
T ss_dssp             SSCEEEEEECTTSSE-EE-------EEETTSCEEEEETT------TCCEEEECBCTTSSSCSSSSCEEEEEECT
T ss_pred             cCceEEEEECCCCCE-EE-------EEECCCcEEEEECC------CCcEeeeeccccccccccCCCEEEEEECC
Confidence            999999999998875 45       44455999999998      455555552       7999999999997

>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}

Probab=100.00  E-value=6.1e-38  Score=263.21  Aligned_cols=214  Identities=11%  Similarity=0.073  Sum_probs=168.5

Q ss_pred             cCCCCCcceEEEEECCC------CCEEEEecCCCcEEEEeCCccccccccCCccccccCCCCceeecCCCCCCCCcccCC
Q 021657            4 LTGHQDNAEFALAMCPT------EPYVLSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAAD   77 (309)
Q Consensus         4 l~~H~~~~V~~~~~~~~------~~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   77 (309)
                      +.+|.+ .|++++|+|+      +.+||+++.||+|+|||+..+.......                             
T Consensus       203 l~~~~~-~V~~v~wsp~~~~~~~~~~LAs~s~DgtvrlWd~~~~~~~~~~~-----------------------------  252 (524)
T 2j04_B          203 IVHSFG-EVWDLKWHEGCHAPHLVGCLSFVSQEGTINFLEIIDNATDVHVF-----------------------------  252 (524)
T ss_dssp             EEECCC-SEEEEEECSSCCCSSSSCEEEEEETTSCEEEEECCCCSSSSSEE-----------------------------
T ss_pred             EEecCC-cEEEEEECCCCCCCCCCceEEEEecCCeEEEEEcCCCccccccc-----------------------------
Confidence            566777 8999999997      5799999999999999997542110000                             


Q ss_pred             CCCcCcccccccccCCeEEEEEecCCCcEEEEEcCCCeEEEEEcCCCCcceEEEeeccCCceeEE--EeccCCC-CeEEE
Q 021657           78 GPSVGPRGIYNGHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCV--DWNPLDD-NLILT  154 (309)
Q Consensus        78 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~--~~~~~~~-~~l~~  154 (309)
                      .....+...+.+|...|++++|++++  .|++|+.||+|++||++++.. ....+.+|...|.++  +|+| ++ .+|++
T Consensus       253 ~~~~~p~~~l~~h~~~v~sv~~s~~~--~lasgs~DgtV~lWD~~~~~~-~~~~~~~H~~~V~sv~~~~s~-~g~~~laS  328 (524)
T 2j04_B          253 KMCEKPSLTLSLADSLITTFDFLSPT--TVVCGFKNGFVAEFDLTDPEV-PSFYDQVHDSYILSVSTAYSD-FEDTVVST  328 (524)
T ss_dssp             ECCCSCSEEECCTTTCEEEEEESSSS--EEEEEETTSEEEEEETTBCSS-CSEEEECSSSCEEEEEEECCT-TSCCEEEE
T ss_pred             eeecCceEEEEcCCCCEEEEEecCCC--eEEEEeCCCEEEEEECCCCCC-ceEEeecccccEEEEEEEcCC-CCCeEEEE
Confidence            00112334567899999999999854  799999999999999987643 345577899999999  5677 76 89999


Q ss_pred             EcCCCcEEEEecCCCCCCCCCCceeeeccCCC--CeeEEEEecCCCcEEEEecCCCcEEEEeCCcccccccCCCCCcCCC
Q 021657          155 GSADNSVRMFDRRNLTSNGVGSPINKFEGHSA--AVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYP  232 (309)
Q Consensus       155 ~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~--~v~~~~~~~~~~~l~~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~  232 (309)
                      ++.|++|++||+++      ++.+..+.+|..  .|.+++|+|++.. +++++.|+.|++||++.               
T Consensus       329 ~S~D~tvklWD~~~------~~~~~~~~~~~~~~~v~~v~fsp~~~~-l~s~~~d~tv~lwd~~~---------------  386 (524)
T 2j04_B          329 VAVDGYFYIFNPKD------IATTKTTVSRFRGSNLVPVVYCPQIYS-YIYSDGASSLRAVPSRA---------------  386 (524)
T ss_dssp             EETTSEEEEECGGG------HHHHCEEEEECSCCSCCCEEEETTTTE-EEEECSSSEEEEEETTC---------------
T ss_pred             eccCCeEEEEECCC------CCcccccccccccCcccceEeCCCcCe-EEEeCCCCcEEEEECcc---------------
Confidence            99999999999998      677666666543  5889999999985 67899999999999987               


Q ss_pred             CceeeeecCCCcceeeEEEccCCCeEEEEecCCCCCCCCCCeEEEEEcc
Q 021657          233 AGLFFQHAGHRDKVVDFHWNASDPWTVVSVSDDCDSTGGGGTLQIWRMS  281 (309)
Q Consensus       233 ~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~s~d~~s~~~dg~v~vw~~~  281 (309)
                      ..++..+.+|...|++++|+|+++.++        +|+.||+|++||+.
T Consensus       387 ~~~~~~l~gH~~~V~sva~Sp~g~~l~--------Sgs~Dgtv~lwd~~  427 (524)
T 2j04_B          387 AFAVHPLVSRETTITAIGVSRLHPMVL--------AGSADGSLIITNAA  427 (524)
T ss_dssp             TTCCEEEEECSSCEEEEECCSSCCBCE--------EEETTTEEECCBSC
T ss_pred             cccceeeecCCCceEEEEeCCCCCeEE--------EEECCCEEEEEech
Confidence            333456678999999999999988655        44445999998854

>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}

Probab=100.00  E-value=2e-37  Score=255.51  Aligned_cols=246  Identities=17%  Similarity=0.255  Sum_probs=191.8

Q ss_pred             CCCCcceEEEEECCCCCEEEEecCCCcEEEEeCCcc----cccccc--CC--ccccccCCCCceeecCCCCCCCCcccCC
Q 021657            6 GHQDNAEFALAMCPTEPYVLSGGKDKSVVLWSIQDH----ITSSAT--DP--ATAKSAGSSGSIIKQSPKPGDGNDKAAD   77 (309)
Q Consensus         6 ~H~~~~V~~~~~~~~~~~l~t~~~dg~i~vwd~~~~----~~~~~~--~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~   77 (309)
                      .|.. .|++++|+|++++|++|+.||.|++||+...    ......  ..  .......... ...+..+..++.+.+|+
T Consensus        65 ~~~~-~v~~~~~s~~~~~l~~~~~dg~v~vw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~-~~~l~s~~~dg~v~iwd  142 (416)
T 2pm9_A           65 QVDS-KFNDLDWSHNNKIIAGALDNGSLELYSTNEANNAINSMARFSNHSSSVKTVKFNAKQ-DNVLASGGNNGEIFIWD  142 (416)
T ss_dssp             CCSS-CEEEEEECSSSSCEEEEESSSCEEEECCSSTTSCCCEEEECCCSSSCCCEEEECSSS-TTBEEEECSSSCEEBCB
T ss_pred             ecCC-ceEEEEECCCCCeEEEEccCCeEEEeecccccccccchhhccCCccceEEEEEcCCC-CCEEEEEcCCCeEEEEE
Confidence            4777 8999999999999999999999999999872    111111  11  1111111110 11223345678899999


Q ss_pred             CCCcC------cc---cccccccCCeEEEEEecCCCcEEEEEcCCCeEEEEEcCCCCcceEEEeecc------CCceeEE
Q 021657           78 GPSVG------PR---GIYNGHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPVIKVEKAH------DADLHCV  142 (309)
Q Consensus        78 ~~~~~------~~---~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~------~~~v~~~  142 (309)
                      ..+.+      ..   ..+..|...|.+++|+|++..+|++++.||.|++||+++++  ....+..+      ...|.++
T Consensus       143 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~--~~~~~~~~~~~~~~~~~v~~~  220 (416)
T 2pm9_A          143 MNKCTESPSNYTPLTPGQSMSSVDEVISLAWNQSLAHVFASAGSSNFASIWDLKAKK--EVIHLSYTSPNSGIKQQLSVV  220 (416)
T ss_dssp             TTTTSSCTTTCCCBCCCCSCCSSCCCCEEEECSSCTTEEEEESSSSCEEEEETTTTE--EEEEECCCCCSSCCCCCEEEE
T ss_pred             CCCCccccccccccccccccCCCCCeeEEEeCCCCCcEEEEEcCCCCEEEEECCCCC--cceEEeccccccccCCceEEE
Confidence            98776      22   23467999999999999955899999999999999998877  55566555      7889999


Q ss_pred             EeccCCC-CeEEEEcCCC---cEEEEecCCCCCCCCCCceeeec-cCCCCeeEEEEec-CCCcEEEEecCCCcEEEEeCC
Q 021657          143 DWNPLDD-NLILTGSADN---SVRMFDRRNLTSNGVGSPINKFE-GHSAAVLCVQWSP-DKSSVFGSSAEDGLLNIWDYE  216 (309)
Q Consensus       143 ~~~~~~~-~~l~~~~~dg---~i~i~d~~~~~~~~~~~~~~~~~-~~~~~v~~~~~~~-~~~~l~~~~~~dg~i~iwd~~  216 (309)
                      +|+| ++ .++++++.|+   .|++||+++.     ..++..+. +|...|.+++|+| ++.. +++++.|+.|++||++
T Consensus       221 ~~~~-~~~~~l~~~~~d~~~~~i~~~d~~~~-----~~~~~~~~~~~~~~v~~~~~s~~~~~~-l~s~~~dg~v~~wd~~  293 (416)
T 2pm9_A          221 EWHP-KNSTRVATATGSDNDPSILIWDLRNA-----NTPLQTLNQGHQKGILSLDWCHQDEHL-LLSSGRDNTVLLWNPE  293 (416)
T ss_dssp             EECS-SCTTEEEEEECCSSSCCCCEEETTST-----TSCSBCCCSCCSSCEEEEEECSSCSSC-EEEEESSSEEEEECSS
T ss_pred             EECC-CCCCEEEEEECCCCCceEEEEeCCCC-----CCCcEEeecCccCceeEEEeCCCCCCe-EEEEeCCCCEEEeeCC
Confidence            9999 64 7999999998   9999999983     25677787 8999999999999 7775 6799999999999998


Q ss_pred             cccccccCCCCCcCCCCceeeeecCCCcceeeEEEccCCCeEEEEecCCCCCCCCCCeEEEEEccccc
Q 021657          217 KVGKKVEQGPRTTNYPAGLFFQHAGHRDKVVDFHWNASDPWTVVSVSDDCDSTGGGGTLQIWRMSDLI  284 (309)
Q Consensus       217 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~s~d~~s~~~dg~v~vw~~~~~~  284 (309)
                      .               ...+..+.+|...|.+++|+|+++.++++++.       |+.|++|++....
T Consensus       294 ~---------------~~~~~~~~~~~~~v~~~~~s~~~~~~l~s~~~-------d~~i~iw~~~~~~  339 (416)
T 2pm9_A          294 S---------------AEQLSQFPARGNWCFKTKFAPEAPDLFACASF-------DNKIEVQTLQNLT  339 (416)
T ss_dssp             S---------------CCEEEEEECSSSCCCCEEECTTCTTEEEECCS-------SSEEEEEESCCCC
T ss_pred             C---------------CccceeecCCCCceEEEEECCCCCCEEEEEec-------CCcEEEEEccCCC
Confidence            7               44567788999999999999998556665554       5999999998643

>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A

Probab=100.00  E-value=1e-36  Score=245.10  Aligned_cols=242  Identities=16%  Similarity=0.287  Sum_probs=193.0

Q ss_pred             cccCCCCCcceEEEEECCCCCEEEEecCCCcEEEEeCCccccccccCCccccccCCCCceeecCCCCCCCCcccCCCCCc
Q 021657            2 EILTGHQDNAEFALAMCPTEPYVLSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSV   81 (309)
Q Consensus         2 ~~l~~H~~~~V~~~~~~~~~~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (309)
                      +.++||.+ .|++++|+|++++|++|+.||.|++||+.+...                                    ..
T Consensus         5 ~~~~gH~~-~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~------------------------------------~~   47 (351)
T 3f3f_A            5 PFDSGHDD-LVHDVVYDFYGRHVATCSSDQHIKVFKLDKDTS------------------------------------NW   47 (351)
T ss_dssp             CEECCCSS-CEEEEEECSSSSEEEEEETTSEEEEEEECSSSC------------------------------------CE
T ss_pred             ccCccccc-ceeEEEEcCCCCEEEEeeCCCeEEEEECCCCCC------------------------------------cc
Confidence            46789999 899999999999999999999999999974211                                    11


Q ss_pred             CcccccccccCCeEEEEEecC--CCcEEEEEcCCCeEEEEEcCCCCc-------ceEEEeeccCCceeEEEeccCC--CC
Q 021657           82 GPRGIYNGHEDTVEDVTFCPS--SAQEFCSVGDDSCLILWDARVGTS-------PVIKVEKAHDADLHCVDWNPLD--DN  150 (309)
Q Consensus        82 ~~~~~~~~~~~~v~~~~~~~~--~~~~l~s~~~dg~i~iwd~~~~~~-------~~~~~~~~~~~~v~~~~~~~~~--~~  150 (309)
                      +....+.+|...|++++|+|.  + .+|++++.||.|++||++.++.       .....+..|...|.+++|+| +  +.
T Consensus        48 ~~~~~~~~~~~~v~~~~~~~~~d~-~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~~  125 (351)
T 3f3f_A           48 ELSDSWRAHDSSIVAIDWASPEYG-RIIASASYDKTVKLWEEDPDQEECSGRRWNKLCTLNDSKGSLYSVKFAP-AHLGL  125 (351)
T ss_dssp             EEEEEEECCSSCEEEEEECCGGGC-SEEEEEETTSCEEEEEECTTSCTTSSCSEEEEEEECCCSSCEEEEEECC-GGGCS
T ss_pred             eecceeccCCCcEEEEEEcCCCCC-CEEEEEcCCCeEEEEecCCCcccccccCcceeeeecccCCceeEEEEcC-CCCCc
Confidence            234566789999999999994  6 8899999999999999987642       24667778999999999999 7  99


Q ss_pred             eEEEEcCCCcEEEEecCCCCCCCCCCceeeec-------------cCCCCeeEEEEecC---CCcEEEEecCCCcEEEEe
Q 021657          151 LILTGSADNSVRMFDRRNLTSNGVGSPINKFE-------------GHSAAVLCVQWSPD---KSSVFGSSAEDGLLNIWD  214 (309)
Q Consensus       151 ~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~-------------~~~~~v~~~~~~~~---~~~l~~~~~~dg~i~iwd  214 (309)
                      +|++++.||.|++||+++      .+.+..+.             .+...+.+++|+|+   +. ++++++.|+.+.+|+
T Consensus       126 ~l~~~~~dg~v~iwd~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~-~l~~~~~~~~~~~~~  198 (351)
T 3f3f_A          126 KLACLGNDGILRLYDALE------PSDLRSWTLTSEMKVLSIPPANHLQSDFCLSWCPSRFSPE-KLAVSALEQAIIYQR  198 (351)
T ss_dssp             EEEEEETTCEEEEEECSS------TTCTTCCEEEEEEESCSCCCSSCSCCCEEEEECCCSSSCC-EEEEEETTEEEEEEE
T ss_pred             EEEEecCCCcEEEecCCC------hHHhccccccccccccccccCCcccceeEEEeccCCCCCc-EEEEecCCCcEEEEc
Confidence            999999999999999998      44333332             56778999999997   66 567999999997777


Q ss_pred             CCcccccccCCCCCcCCCCceeeeecCCCcceeeEEEccCCC---eEEEEecCCCCCCCCCCeEEEEEcccccc------
Q 021657          215 YEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKVVDFHWNASDP---WTVVSVSDDCDSTGGGGTLQIWRMSDLIY------  285 (309)
Q Consensus       215 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~---~~~~s~s~d~~s~~~dg~v~vw~~~~~~~------  285 (309)
                      ... ++            ...+..+.+|...|.+++|+|++.   .++++++.|       |.|++||+.....      
T Consensus       199 ~~~-~~------------~~~~~~~~~h~~~i~~~~~~p~~~~~~~~l~s~~~d-------g~i~iwd~~~~~~~~~~~~  258 (351)
T 3f3f_A          199 GKD-GK------------LHVAAKLPGHKSLIRSISWAPSIGRWYQLIATGCKD-------GRIRIFKITEKLSPLASEE  258 (351)
T ss_dssp             CTT-SC------------EEEEEECCCCCSCEEEEEECCCSSCSSEEEEEEETT-------SCEEEEEEEECC-------
T ss_pred             cCC-Cc------------eeeeeecCCCCcceeEEEECCCCCCcceEEEEEcCC-------CeEEEEeCCCCcCccccCC
Confidence            665 11            224667788999999999999873   567766555       9999999984210      


Q ss_pred             ----------------------------------CChhhHhHhhhcccceEEEeeeCC
Q 021657          286 ----------------------------------RPQDEVLAELEKFKAHVISCTSKP  309 (309)
Q Consensus       286 ----------------------------------~~~~~~~~~~~~h~~~v~~~~~~P  309 (309)
                                                        ....+++..+.+|.+.|.+++|+|
T Consensus       259 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~  316 (351)
T 3f3f_A          259 SLTNSNMFDNSADVDMDAQGRSDSNTEEKAELQSNLQVELLSEHDDHNGEVWSVSWNL  316 (351)
T ss_dssp             --------------------------------CCSEEEEEEEEECTTSSCEEEEEECS
T ss_pred             cccceeccCCCcccccccccccccccceeeeecccccccEEEEEecccccEEEEEEcC
Confidence                                              001255667788999999999987

>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A

Probab=100.00  E-value=1.4e-37  Score=251.99  Aligned_cols=278  Identities=14%  Similarity=0.235  Sum_probs=210.9

Q ss_pred             ccCCCCCcceEEEEECCC----CCEEEEecCCCcEEEEeCCccccccccCC---------cccc--ccCCCCceeecCCC
Q 021657            3 ILTGHQDNAEFALAMCPT----EPYVLSGGKDKSVVLWSIQDHITSSATDP---------ATAK--SAGSSGSIIKQSPK   67 (309)
Q Consensus         3 ~l~~H~~~~V~~~~~~~~----~~~l~t~~~dg~i~vwd~~~~~~~~~~~~---------~~~~--~~~~~~~~~~~~~~   67 (309)
                      .+++|.+ +|++++|+|+    ...+++++.++.|++||+.++........         ....  .+........+..+
T Consensus        13 ~~~~h~~-~v~~i~~~p~~~~~~~~~~~~~~~~~v~vw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~   91 (366)
T 3k26_A           13 LKEDHNQ-PLFGVQFNWHSKEGDPLVFATVGSNRVTLYECHSQGEIRLLQSYVDADADENFYTCAWTYDSNTSHPLLAVA   91 (366)
T ss_dssp             EECTTCS-CEEEEEECTTCCTTSCEEEEEEETTEEEEEEECGGGCEEEEEEEECSCTTCCEEEEEEEECTTTCCEEEEEE
T ss_pred             eecCCCC-ceEEEEEecccCCCCceEEEECCCCEEEEEEcCCCcEEEeeeeccccCCCCcEEEEEeccCCCCCCCEEEEe
Confidence            3458998 8999999984    55677777788999999986633222111         1111  11111112234445


Q ss_pred             CCCCCcccCCCCCcCcccccccccCCeEEEEEec-CCCcEEEEEcCCCeEEEEEcCCCCcceEEEe---eccCCceeEEE
Q 021657           68 PGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCP-SSAQEFCSVGDDSCLILWDARVGTSPVIKVE---KAHDADLHCVD  143 (309)
Q Consensus        68 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~---~~~~~~v~~~~  143 (309)
                      ..++.+.+|+..+.+.+..+.+|...|.+++|+| ++ .+|++++.||.|++||+++++  ....+   ..|...|.+++
T Consensus        92 ~~dg~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~-~~l~s~~~dg~i~iwd~~~~~--~~~~~~~~~~~~~~v~~~~  168 (366)
T 3k26_A           92 GSRGIIRIINPITMQCIKHYVGHGNAINELKFHPRDP-NLLLSVSKDHALRLWNIQTDT--LVAIFGGVEGHRDEVLSAD  168 (366)
T ss_dssp             ETTCEEEEECTTTCCEEEEEESCCSCEEEEEECSSCT-TEEEEEETTSCEEEEETTTTE--EEEEECSTTSCSSCEEEEE
T ss_pred             cCCCEEEEEEchhceEeeeecCCCCcEEEEEECCCCC-CEEEEEeCCCeEEEEEeecCe--EEEEecccccccCceeEEE
Confidence            6788999999999999999999999999999999 55 899999999999999998877  55555   67999999999


Q ss_pred             eccCCCCeEEEEcCCCcEEEEecCCCCCCCCCCceeeec----------------------------cCCCCeeEEEEec
Q 021657          144 WNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFE----------------------------GHSAAVLCVQWSP  195 (309)
Q Consensus       144 ~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~----------------------------~~~~~v~~~~~~~  195 (309)
                      |+| ++++|++++.||.|++||+++      ++.+..+.                            .|...|.+++|+ 
T Consensus       169 ~~~-~~~~l~~~~~dg~i~i~d~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~-  240 (366)
T 3k26_A          169 YDL-LGEKIMSCGMDHSLKLWRINS------KRMMNAIKESYDYNPNKTNRPFISQKIHFPDFSTRDIHRNYVDCVRWL-  240 (366)
T ss_dssp             ECT-TSSEEEEEETTSCEEEEESCS------HHHHHHHHHHHTCCGGGCSSCCCCEEECCCSEEECSSCSSCCCEEEEE-
T ss_pred             ECC-CCCEEEEecCCCCEEEEECCC------CccccccceeEEecCCCCcccccceeeccCccccccCCcceEEEEEEc-
Confidence            999 999999999999999999987      44443333                            388999999999 


Q ss_pred             CCCcEEEEecCCCcEEEEeCCcccccccCCCCCcCCCCceeeeecCCCcceeeEEEccC--CCeEEEEecCCCCCCCCCC
Q 021657          196 DKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKVVDFHWNAS--DPWTVVSVSDDCDSTGGGG  273 (309)
Q Consensus       196 ~~~~l~~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~--~~~~~~s~s~d~~s~~~dg  273 (309)
                       +. ++++++.|+.|++||++.......... ........+..+..|...|.+++|+|+  +.+++        +|+.||
T Consensus       241 -~~-~l~~~~~d~~i~~wd~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~l~--------~~~~dg  309 (366)
T 3k26_A          241 -GD-LILSKSCENAIVCWKPGKMEDDIDKIK-PSESNVTILGRFDYSQCDIWYMRFSMDFWQKMLA--------LGNQVG  309 (366)
T ss_dssp             -TT-EEEEECSSSEEEEEEESSTTCCGGGCC-TTCCCEEEEEEEECSSCCSSCCCCEECTTSSEEE--------EECTTS
T ss_pred             -CC-EEEEEecCCEEEEEeCCCccccccccc-cCCcchheeccccccCCcEEEEEEcCCCCCcEEE--------EEecCC
Confidence             55 567999999999999987444322211 111223456778889999999999998  66544        455559


Q ss_pred             eEEEEEccccccCChhhHhH----hhhcc--cceEEEeeeCC
Q 021657          274 TLQIWRMSDLIYRPQDEVLA----ELEKF--KAHVISCTSKP  309 (309)
Q Consensus       274 ~v~vw~~~~~~~~~~~~~~~----~~~~h--~~~v~~~~~~P  309 (309)
                      .|++||+.      .++++.    .+.+|  ...|.+++|+|
T Consensus       310 ~i~vwd~~------~~~~~~~~~~~~~~~~~~~~v~~~~~s~  345 (366)
T 3k26_A          310 KLYVWDLE------VEDPHKAKCTTLTHHKCGAAIRQTSFSR  345 (366)
T ss_dssp             CEEEEECC------SSSGGGCEEEEECCTTCCSCEEEEEECT
T ss_pred             cEEEEECC------CCCCccccceEEcccccCCceEEEEeCC
Confidence            99999998      444333    67777  78999999987

>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*

Probab=100.00  E-value=9.3e-37  Score=248.90  Aligned_cols=221  Identities=16%  Similarity=0.218  Sum_probs=177.4

Q ss_pred             cccCCCCCcceEEEEECCCC-CEEEEecCCCcEEEEeCCccccccccCCccccccCCCCceeecCCCCCCCCcccCCCCC
Q 021657            2 EILTGHQDNAEFALAMCPTE-PYVLSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPS   80 (309)
Q Consensus         2 ~~l~~H~~~~V~~~~~~~~~-~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (309)
                      +.+.+|.+ .|++++|+|++ ++|++|+.||.|+|||+.+....                                    
T Consensus        67 ~~~~~h~~-~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~------------------------------------  109 (383)
T 3ei3_B           67 RTASPFDR-RVTSLEWHPTHPTTVAVGSKGGDIILWDYDVQNKT------------------------------------  109 (383)
T ss_dssp             EEECCCSS-CEEEEEECSSCTTEEEEEEBTSCEEEEETTSTTCE------------------------------------
T ss_pred             EeccCCCC-CEEEEEECCCCCCEEEEEcCCCeEEEEeCCCcccc------------------------------------
Confidence            46789998 89999999999 99999999999999999743111                                    


Q ss_pred             cCcccccccccCCeEEEEEecCCCcEEEEEcCCCeEEEEEcCCCCcceEEEee---ccCCceeEEEeccCCCCeEEEEcC
Q 021657           81 VGPRGIYNGHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPVIKVEK---AHDADLHCVDWNPLDDNLILTGSA  157 (309)
Q Consensus        81 ~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~---~~~~~v~~~~~~~~~~~~l~~~~~  157 (309)
                        ......+|...|.+++|+|+++.+|++++.|+.|++||++...   ...+.   .|...|.+++|+| ++.+|++++.
T Consensus       110 --~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~---~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~  183 (383)
T 3ei3_B          110 --SFIQGMGPGDAITGMKFNQFNTNQLFVSSIRGATTLRDFSGSV---IQVFAKTDSWDYWYCCVDVSV-SRQMLATGDS  183 (383)
T ss_dssp             --EEECCCSTTCBEEEEEEETTEEEEEEEEETTTEEEEEETTSCE---EEEEECCCCSSCCEEEEEEET-TTTEEEEEET
T ss_pred             --eeeecCCcCCceeEEEeCCCCCCEEEEEeCCCEEEEEECCCCc---eEEEeccCCCCCCeEEEEECC-CCCEEEEECC
Confidence              1122346999999999999444899999999999999998533   34443   3447899999999 9999999999


Q ss_pred             CCcEEEEecCCCCCCCCCCceeeeccCCCCeeEEEEecCCCcEEEEecCCCcEEEEeCCcccccccCCCCCcCCCCceee
Q 021657          158 DNSVRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFF  237 (309)
Q Consensus       158 dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~  237 (309)
                      |+.|++||++       ++++..+..|...|.+++|+|++++++++++.|+.|++||++.....           ..++.
T Consensus       184 d~~i~i~d~~-------~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~-----------~~~~~  245 (383)
T 3ei3_B          184 TGRLLLLGLD-------GHEIFKEKLHKAKVTHAEFNPRCDWLMATSSVDATVKLWDLRNIKDK-----------NSYIA  245 (383)
T ss_dssp             TSEEEEEETT-------SCEEEEEECSSSCEEEEEECSSCTTEEEEEETTSEEEEEEGGGCCST-----------TCEEE
T ss_pred             CCCEEEEECC-------CCEEEEeccCCCcEEEEEECCCCCCEEEEEeCCCEEEEEeCCCCCcc-----------cceEE
Confidence            9999999994       67888999999999999999999966789999999999999873221           12333


Q ss_pred             eecCCCcceeeEEEcc-CCCeEEEEecCCCCCCCCCCeEEEEEccccccCChhhHhHhhhcc
Q 021657          238 QHAGHRDKVVDFHWNA-SDPWTVVSVSDDCDSTGGGGTLQIWRMSDLIYRPQDEVLAELEKF  298 (309)
Q Consensus       238 ~~~~~~~~v~~~~~~~-~~~~~~~s~s~d~~s~~~dg~v~vw~~~~~~~~~~~~~~~~~~~h  298 (309)
                      .+ +|...|.+++|+| ++.+++ +++       .|+.|++||+.      +.+.+..+.+|
T Consensus       246 ~~-~~~~~v~~~~~s~~~~~~l~-~~~-------~d~~i~iwd~~------~~~~~~~~~~~  292 (383)
T 3ei3_B          246 EM-PHEKPVNAAYFNPTDSTKLL-TTD-------QRNEIRVYSSY------DWSKPDQIIIH  292 (383)
T ss_dssp             EE-ECSSCEEEEEECTTTSCEEE-EEE-------SSSEEEEEETT------BTTSCSEEEEC
T ss_pred             Ee-cCCCceEEEEEcCCCCCEEE-EEc-------CCCcEEEEECC------CCccccccccc
Confidence            33 6999999999999 777655 444       44999999998      45555555544

>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A

Probab=100.00  E-value=1.1e-36  Score=243.94  Aligned_cols=258  Identities=19%  Similarity=0.301  Sum_probs=204.7

Q ss_pred             CCCCCcceEEEEECCCCCEEEEecCCCcEEEEeCCccccccccC---------CccccccCCCCceeecCCCCCCCCccc
Q 021657            5 TGHQDNAEFALAMCPTEPYVLSGGKDKSVVLWSIQDHITSSATD---------PATAKSAGSSGSIIKQSPKPGDGNDKA   75 (309)
Q Consensus         5 ~~H~~~~V~~~~~~~~~~~l~t~~~dg~i~vwd~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~   75 (309)
                      .+|.+ .|++++|+|++++|++++ ||.|++||+.+........         ............  .+..+..++.+.+
T Consensus        48 ~~h~~-~v~~~~~~~~~~~l~~~~-dg~i~iw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~--~l~~~~~d~~i~~  123 (337)
T 1gxr_A           48 LNHGE-VVCAVTISNPTRHVYTGG-KGCVKVWDISHPGNKSPVSQLDCLNRDNYIRSCKLLPDGC--TLIVGGEASTLSI  123 (337)
T ss_dssp             ECCSS-CCCEEEECSSSSEEEEEC-BSEEEEEETTSTTCCSCSEEEECSCTTSBEEEEEECTTSS--EEEEEESSSEEEE
T ss_pred             ccCCC-ceEEEEEecCCcEEEEcC-CCeEEEEECCCCCceeeeecccccCCCCcEEEEEEcCCCC--EEEEEcCCCcEEE
Confidence            47888 899999999999999999 9999999998753222111         111111111111  1222345678999


Q ss_pred             CCCCCcC--cccccccccCCeEEEEEecCCCcEEEEEcCCCeEEEEEcCCCCcceEEEeeccCCceeEEEeccCCCCeEE
Q 021657           76 ADGPSVG--PRGIYNGHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLIL  153 (309)
Q Consensus        76 ~~~~~~~--~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~  153 (309)
                      |+..+.+  ....+..|...|.+++|+|++ .+|++++.||.|++||+++++  ....+..|...+.+++|+| ++++|+
T Consensus       124 ~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~~l~~~~~dg~v~~~d~~~~~--~~~~~~~~~~~i~~~~~~~-~~~~l~  199 (337)
T 1gxr_A          124 WDLAAPTPRIKAELTSSAPACYALAISPDS-KVCFSCCSDGNIAVWDLHNQT--LVRQFQGHTDGASCIDISN-DGTKLW  199 (337)
T ss_dssp             EECCCC--EEEEEEECSSSCEEEEEECTTS-SEEEEEETTSCEEEEETTTTE--EEEEECCCSSCEEEEEECT-TSSEEE
T ss_pred             EECCCCCcceeeecccCCCceEEEEECCCC-CEEEEEeCCCcEEEEeCCCCc--eeeeeecccCceEEEEECC-CCCEEE
Confidence            9988776  566778899999999999998 889999999999999998877  6777888999999999999 999999


Q ss_pred             EEcCCCcEEEEecCCCCCCCCCCceeeeccCCCCeeEEEEecCCCcEEEEecCCCcEEEEeCCcccccccCCCCCcCCCC
Q 021657          154 TGSADNSVRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPA  233 (309)
Q Consensus       154 ~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~  233 (309)
                      +++.||.|++||+++      ++.+..+. +...+.+++|+|+++. +++++.|+.|++||++..               
T Consensus       200 ~~~~dg~i~~~d~~~------~~~~~~~~-~~~~v~~~~~s~~~~~-l~~~~~~~~i~~~~~~~~---------------  256 (337)
T 1gxr_A          200 TGGLDNTVRSWDLRE------GRQLQQHD-FTSQIFSLGYCPTGEW-LAVGMESSNVEVLHVNKP---------------  256 (337)
T ss_dssp             EEETTSEEEEEETTT------TEEEEEEE-CSSCEEEEEECTTSSE-EEEEETTSCEEEEETTSS---------------
T ss_pred             EEecCCcEEEEECCC------CceEeeec-CCCceEEEEECCCCCE-EEEEcCCCcEEEEECCCC---------------
Confidence            999999999999998      77777765 6788999999999996 568899999999999872               


Q ss_pred             ceeeeecCCCcceeeEEEccCCCeEEEEecCCCCCCCCCCeEEEEEccccccCChhhHhHhhhcccceEEEeeeCC
Q 021657          234 GLFFQHAGHRDKVVDFHWNASDPWTVVSVSDDCDSTGGGGTLQIWRMSDLIYRPQDEVLAELEKFKAHVISCTSKP  309 (309)
Q Consensus       234 ~~~~~~~~~~~~v~~~~~~~~~~~~~~s~s~d~~s~~~dg~v~vw~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~P  309 (309)
                       ....+..|...|.+++|+|++.+++        +++.||.|++||+.      .++.+. ...|...|.+++|+|
T Consensus       257 -~~~~~~~~~~~v~~~~~~~~~~~l~--------~~~~dg~i~~~~~~------~~~~~~-~~~~~~~v~~~~~s~  316 (337)
T 1gxr_A          257 -DKYQLHLHESCVLSLKFAYCGKWFV--------STGKDNLLNAWRTP------YGASIF-QSKESSSVLSCDISV  316 (337)
T ss_dssp             -CEEEECCCSSCEEEEEECTTSSEEE--------EEETTSEEEEEETT------TCCEEE-EEECSSCEEEEEECT
T ss_pred             -CeEEEcCCccceeEEEECCCCCEEE--------EecCCCcEEEEECC------CCeEEE-EecCCCcEEEEEECC
Confidence             1235678899999999999888655        44445999999998      444443 345888999999987

>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}

Probab=100.00  E-value=9.4e-37  Score=261.68  Aligned_cols=260  Identities=23%  Similarity=0.437  Sum_probs=209.3

Q ss_pred             cccCCCCCcceEEEEECCCCCEEEEecCCCcEEEEeCCcccccc-ccC--CccccccCCCCceeecCCCCCCCCcccCCC
Q 021657            2 EILTGHQDNAEFALAMCPTEPYVLSGGKDKSVVLWSIQDHITSS-ATD--PATAKSAGSSGSIIKQSPKPGDGNDKAADG   78 (309)
Q Consensus         2 ~~l~~H~~~~V~~~~~~~~~~~l~t~~~dg~i~vwd~~~~~~~~-~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   78 (309)
                      +.+.+|.. .|++++|+|++++|++++.|+.|++||........ ...  ............  .+..+..++.+++|+.
T Consensus       256 ~~~~~~~~-~v~~v~~~~d~~~l~~~~~d~~i~~w~~~~~~~~~~~~h~~~v~~~~~~~~~~--~l~t~~~d~~i~~w~~  332 (577)
T 2ymu_A          256 QTLTGHSS-SVNGVAFRPDGQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVWGVAFSPDGQ--TIASASDDKTVKLWNR  332 (577)
T ss_dssp             EEECCCSS-CEEEEEECTTSSEEEEEETTSCEEEEETTSCEEEEECCCSSCEEEEEECTTSS--EEEEEETTSCEEEEET
T ss_pred             EEEecCCC-CEEEEEEcCCCCEEEEEeCCCEEEEEeCCCcEEEEEecCCCCeEEEEECCCCC--EEEEEeCCCeEEEEeC
Confidence            46789998 89999999999999999999999999976542111 111  111111111111  2223345778899986


Q ss_pred             CCcCcccccccccCCeEEEEEecCCCcEEEEEcCCCeEEEEEcCCCCcceEEEeeccCCceeEEEeccCCCCeEEEEcCC
Q 021657           79 PSVGPRGIYNGHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSAD  158 (309)
Q Consensus        79 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d  158 (309)
                      .. ..+..+.+|...|.+++|+|++ .+|++++.||.|++||. +++  ....+.+|...|.+++|+| ++++|++++.|
T Consensus       333 ~~-~~~~~~~~~~~~v~~~~~s~~g-~~l~~~~~dg~v~~~~~-~~~--~~~~~~~~~~~v~~~~~s~-dg~~l~~~~~d  406 (577)
T 2ymu_A          333 NG-QHLQTLTGHSSSVWGVAFSPDG-QTIASASDDKTVKLWNR-NGQ--LLQTLTGHSSSVRGVAFSP-DGQTIASASDD  406 (577)
T ss_dssp             TS-CEEEEECCCSSCEEEEEECTTS-SEEEEEETTSEEEEEET-TCC--EEEEEECCSSCEEEEEECT-TSSCEEEEETT
T ss_pred             CC-CeeEEEeCCCCCEEEEEECCCC-CEEEEEeCCCEEEEEcC-CCC--EEEEecCCCCCeEEEEECC-CCCEEEEEeCC
Confidence            54 4456778899999999999998 88999999999999996 344  5777889999999999999 99999999999


Q ss_pred             CcEEEEecCCCCCCCCCCceeeeccCCCCeeEEEEecCCCcEEEEecCCCcEEEEeCCcccccccCCCCCcCCCCceeee
Q 021657          159 NSVRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQ  238 (309)
Q Consensus       159 g~i~i~d~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~  238 (309)
                      +.|++||..       ++.+..+.+|...|++++|+|+++. +++++.|+.|++||+..                ..+..
T Consensus       407 ~~v~~~~~~-------~~~~~~~~~~~~~v~~~~~s~d~~~-l~~~~~d~~v~~w~~~~----------------~~~~~  462 (577)
T 2ymu_A          407 KTVKLWNRN-------GQLLQTLTGHSSSVWGVAFSPDDQT-IASASDDKTVKLWNRNG----------------QLLQT  462 (577)
T ss_dssp             SEEEEECTT-------CCEEEEEECCSSCEEEEEECTTSSE-EEEEETTSEEEEEETTS----------------CEEEE
T ss_pred             CEEEEEeCC-------CCEEEEecCCCCCeEEEEECCCCCE-EEEEcCCCEEEEEECCC----------------CEEEE
Confidence            999999953       6788899999999999999999995 67999999999999653                34567


Q ss_pred             ecCCCcceeeEEEccCCCeEEEEecCCCCCCCCCCeEEEEEccccccCChhhHhHhhhcccceEEEeeeCC
Q 021657          239 HAGHRDKVVDFHWNASDPWTVVSVSDDCDSTGGGGTLQIWRMSDLIYRPQDEVLAELEKFKAHVISCTSKP  309 (309)
Q Consensus       239 ~~~~~~~v~~~~~~~~~~~~~~s~s~d~~s~~~dg~v~vw~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~P  309 (309)
                      +.+|...|.+++|+|++.+++ ++       +.|+.|++||..       ++++.++.+|...|.+++|+|
T Consensus       463 ~~~~~~~v~~~~~spd~~~la-s~-------~~d~~i~iw~~~-------~~~~~~~~~h~~~v~~l~~s~  518 (577)
T 2ymu_A          463 LTGHSSSVRGVAFSPDGQTIA-SA-------SDDKTVKLWNRN-------GQLLQTLTGHSSSVRGVAFSP  518 (577)
T ss_dssp             EECCSSCEEEEEECTTSCEEE-EE-------ETTSEEEEEETT-------SCEEEEEECCSSCEEEEEECT
T ss_pred             EcCCCCCEEEEEEcCCCCEEE-EE-------eCCCEEEEEcCC-------CCEEEEEeCCCCCEEEEEEcC
Confidence            788999999999999887654 44       445999999964       667888999999999999997

>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...

Probab=100.00  E-value=1.2e-36  Score=241.45  Aligned_cols=245  Identities=18%  Similarity=0.331  Sum_probs=193.9

Q ss_pred             cccCCCCCcceEEEEECCCCCEEEEecCCCcEEEEeCCccccccccCC----ccccccCCCCceeecCCCCCCCCcccCC
Q 021657            2 EILTGHQDNAEFALAMCPTEPYVLSGGKDKSVVLWSIQDHITSSATDP----ATAKSAGSSGSIIKQSPKPGDGNDKAAD   77 (309)
Q Consensus         2 ~~l~~H~~~~V~~~~~~~~~~~l~t~~~dg~i~vwd~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~   77 (309)
                      +.+.+|.. .|.+++|+|++++|++|+.||.|++||++++........    ..........  ..+..+..++.+++|+
T Consensus        59 ~~~~~h~~-~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~--~~l~s~~~d~~i~iwd  135 (312)
T 4ery_A           59 KTISGHKL-GISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQS--NLIVSGSFDESVRIWD  135 (312)
T ss_dssp             EEECCCSS-CEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECSSS--SEEEEEETTSCEEEEE
T ss_pred             hhhccCCC-ceEEEEEcCCCCEEEEECCCCEEEEEECCCCcEEEEEcCCCCCEEEEEEcCCC--CEEEEEeCCCcEEEEE
Confidence            45788998 899999999999999999999999999987643322211    1111111111  2233455678999999


Q ss_pred             CCCcCcccccccccCCeEEEEEecCCCcEEEEEcCCCeEEEEEcCCCCcceEEE-eeccCCceeEEEeccCCCCeEEEEc
Q 021657           78 GPSVGPRGIYNGHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPVIKV-EKAHDADLHCVDWNPLDDNLILTGS  156 (309)
Q Consensus        78 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~-~~~~~~~v~~~~~~~~~~~~l~~~~  156 (309)
                      ..+.+.+..+..|..+|.+++|+|++ .+|++++.||.|++||+++++  .... ...+...+.+++|+| ++++|++++
T Consensus       136 ~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~d~~i~~wd~~~~~--~~~~~~~~~~~~~~~~~~~~-~~~~l~~~~  211 (312)
T 4ery_A          136 VKTGKCLKTLPAHSDPVSAVHFNRDG-SLIVSSSYDGLCRIWDTASGQ--CLKTLIDDDNPPVSFVKFSP-NGKYILAAT  211 (312)
T ss_dssp             TTTCCEEEEECCCSSCEEEEEECTTS-SEEEEEETTSCEEEEETTTCC--EEEEECCSSCCCEEEEEECT-TSSEEEEEE
T ss_pred             CCCCEEEEEecCCCCcEEEEEEcCCC-CEEEEEeCCCcEEEEECCCCc--eeeEEeccCCCceEEEEECC-CCCEEEEEc
Confidence            99999999999999999999999998 789999999999999998877  3433 345667899999999 999999999


Q ss_pred             CCCcEEEEecCCCCCCCCCCceeeeccCCCCeeE--EEEe-cCCCcEEEEecCCCcEEEEeCCcccccccCCCCCcCCCC
Q 021657          157 ADNSVRMFDRRNLTSNGVGSPINKFEGHSAAVLC--VQWS-PDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPA  233 (309)
Q Consensus       157 ~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~v~~--~~~~-~~~~~l~~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~  233 (309)
                      .|+.|++||+++      ++.+..+.+|......  ..++ +++. ++++|+.||.|++||++.               .
T Consensus       212 ~d~~i~iwd~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~-~l~sg~~dg~i~vwd~~~---------------~  269 (312)
T 4ery_A          212 LDNTLKLWDYSK------GKCLKTYTGHKNEKYCIFANFSVTGGK-WIVSGSEDNLVYIWNLQT---------------K  269 (312)
T ss_dssp             TTTEEEEEETTT------TEEEEEECSSCCSSSCCCEEEECSSSC-EEEECCTTSCEEEEETTT---------------C
T ss_pred             CCCeEEEEECCC------CcEEEEEEecCCceEEEEEEEEeCCCc-EEEEECCCCEEEEEECCC---------------c
Confidence            999999999998      8888888877655332  3444 4555 577999999999999987               4


Q ss_pred             ceeeeecCCCcceeeEEEccCCCeEEEEecCCCCCCCCCCeEEEEEcc
Q 021657          234 GLFFQHAGHRDKVVDFHWNASDPWTVVSVSDDCDSTGGGGTLQIWRMS  281 (309)
Q Consensus       234 ~~~~~~~~~~~~v~~~~~~~~~~~~~~s~s~d~~s~~~dg~v~vw~~~  281 (309)
                      ..+..+.+|...|.+++|+|+++.++ +++     .+.|+.|++|+..
T Consensus       270 ~~~~~~~~h~~~v~~~~~~p~~~~l~-s~~-----~~~d~~i~~W~~d  311 (312)
T 4ery_A          270 EIVQKLQGHTDVVISTACHPTENIIA-SAA-----LENDKTIKLWKSD  311 (312)
T ss_dssp             CEEEEECCCSSCEEEEEECSSSSEEE-EEE-----CTTTCCEEEEECC
T ss_pred             hhhhhhhccCCcEEEEeecCcCCceE-EEE-----ccCCccEEEecCC
Confidence            56678889999999999999887655 332     1245999999975

>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}

Probab=100.00  E-value=5.3e-36  Score=246.16  Aligned_cols=263  Identities=20%  Similarity=0.325  Sum_probs=198.0

Q ss_pred             cccCCCCCcceEEEEECC-CCCEEEEecCCCcEEEEeCCccccccccCCccccccCCCCceeecCCCCCCCCcccCCCCC
Q 021657            2 EILTGHQDNAEFALAMCP-TEPYVLSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPS   80 (309)
Q Consensus         2 ~~l~~H~~~~V~~~~~~~-~~~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (309)
                      +.+++|.+ .|++++|+| ++++|++|+.||.|++||+.+.............                           
T Consensus        37 ~~~~~h~~-~v~~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~---------------------------   88 (408)
T 4a11_B           37 DVERIHGG-GINTLDIEPVEGRYMLSGGSDGVIVLYDLENSSRQSYYTCKAVC---------------------------   88 (408)
T ss_dssp             EECCCCSS-CEEEEEECTTTCCEEEEEETTSCEEEEECCCCSSSSCEEECEEE---------------------------
T ss_pred             eeeeccCC-cEEEEEEecCCCCEEEEEcCCCeEEEEECCCCcccceEeccccc---------------------------
Confidence            45788998 899999999 9999999999999999999865322211100000                           


Q ss_pred             cCcccccccccCCeEEEEEecCCCcEEEEEcCCCeEEEEEcCCCCcceEEEeeccCCceeEEEeccC--CCCeEEEEcCC
Q 021657           81 VGPRGIYNGHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPL--DDNLILTGSAD  158 (309)
Q Consensus        81 ~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~--~~~~l~~~~~d  158 (309)
                      ........+|...|.+++|+|++..+|++++.||.|++||+.+++  ....+ .+...+.++.++|.  ++.++++++.|
T Consensus        89 ~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~--~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~  165 (408)
T 4a11_B           89 SIGRDHPDVHRYSVETVQWYPHDTGMFTSSSFDKTLKVWDTNTLQ--TADVF-NFEETVYSHHMSPVSTKHCLVAVGTRG  165 (408)
T ss_dssp             EECTTCTTCCSSCEEEEEECTTCTTCEEEEETTSEEEEEETTTTE--EEEEE-ECSSCEEEEEECSSCSSCCEEEEEESS
T ss_pred             cccccccccCCCcEEEEEEccCCCcEEEEEeCCCeEEEeeCCCCc--cceec-cCCCceeeeEeecCCCCCcEEEEEcCC
Confidence            000112246899999999999555899999999999999998877  44444 47788999999883  22399999999


Q ss_pred             CcEEEEecCCCCCCCCCCceeeeccCCCCeeEEEEecCCCcEEEEecCCCcEEEEeCCcccccccCCCCCc-CCCCceee
Q 021657          159 NSVRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTT-NYPAGLFF  237 (309)
Q Consensus       159 g~i~i~d~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~dg~i~iwd~~~~~~~~~~~~~~~-~~~~~~~~  237 (309)
                      |.|++||+++      ++.+..+..|...|.+++|+|++++++++++.||.|++||++............. ........
T Consensus       166 ~~v~~~d~~~------~~~~~~~~~~~~~v~~~~~~~~~~~ll~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~  239 (408)
T 4a11_B          166 PKVQLCDLKS------GSCSHILQGHRQEILAVSWSPRYDYILATASADSRVKLWDVRRASGCLITLDQHNGKKSQAVES  239 (408)
T ss_dssp             SSEEEEESSS------SCCCEEECCCCSCEEEEEECSSCTTEEEEEETTSCEEEEETTCSSCCSEECCTTTTCSCCCTTT
T ss_pred             CeEEEEeCCC------cceeeeecCCCCcEEEEEECCCCCcEEEEEcCCCcEEEEECCCCCcccccccccccccceeecc
Confidence            9999999998      8888999999999999999999998788999999999999987543322221111 11122233


Q ss_pred             eecCCCcceeeEEEccCCCeEEEEecCCCCCCCCCCeEEEEEccccccC-------------------------------
Q 021657          238 QHAGHRDKVVDFHWNASDPWTVVSVSDDCDSTGGGGTLQIWRMSDLIYR-------------------------------  286 (309)
Q Consensus       238 ~~~~~~~~v~~~~~~~~~~~~~~s~s~d~~s~~~dg~v~vw~~~~~~~~-------------------------------  286 (309)
                      ...+|...|.+++|+|++.+++        +++.||.|++||+......                               
T Consensus       240 ~~~~~~~~v~~~~~~~~~~~l~--------~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  311 (408)
T 4a11_B          240 ANTAHNGKVNGLCFTSDGLHLL--------TVGTDNRMRLWNSSNGENTLVNYGKVCNNSKKGLKFTVSCGCSSEFVFVP  311 (408)
T ss_dssp             SSCSCSSCEEEEEECTTSSEEE--------EEETTSCEEEEETTTCCBCCCCCCCCCCCCSSCCCCEECCSSSSCEEEEE
T ss_pred             ccccccCceeEEEEcCCCCEEE--------EecCCCeEEEEECCCCccceeccccccccccccceeEEecCCCceEEEEe
Confidence            4467899999999999887655        4444588999998753211                               


Q ss_pred             ----------ChhhHhHhhhcccceEEEeeeCC
Q 021657          287 ----------PQDEVLAELEKFKAHVISCTSKP  309 (309)
Q Consensus       287 ----------~~~~~~~~~~~h~~~v~~~~~~P  309 (309)
                                .+++++..+.+|.+.|.+++|+|
T Consensus       312 ~~~~i~v~d~~~~~~~~~~~~~~~~v~~~~~s~  344 (408)
T 4a11_B          312 YGSTIAVYTVYSGEQITMLKGHYKTVDCCVFQS  344 (408)
T ss_dssp             ETTEEEEEETTTCCEEEEECCCSSCEEEEEEET
T ss_pred             cCCEEEEEECcCCcceeeeccCCCeEEEEEEcC
Confidence                      23456677788999999999987

>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A

Probab=100.00  E-value=2.2e-37  Score=275.61  Aligned_cols=267  Identities=20%  Similarity=0.304  Sum_probs=219.1

Q ss_pred             cccCCCCCcceEEEEECCCCCEEEEecCCCcEEEEeCCccccccccC----CccccccCCCCceeecCCCCCCCCcccCC
Q 021657            2 EILTGHQDNAEFALAMCPTEPYVLSGGKDKSVVLWSIQDHITSSATD----PATAKSAGSSGSIIKQSPKPGDGNDKAAD   77 (309)
Q Consensus         2 ~~l~~H~~~~V~~~~~~~~~~~l~t~~~dg~i~vwd~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   77 (309)
                      +.|++|.+ .|++++|+|++++|++|+.||.|+|||+.++.......    ............  .+..+..++.+.+|+
T Consensus         7 ~~~~~h~~-~v~~i~~sp~~~~la~~~~~g~v~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~--~l~~~~~dg~i~vw~   83 (814)
T 3mkq_A            7 KTFSNRSD-RVKGIDFHPTEPWVLTTLYSGRVEIWNYETQVEVRSIQVTETPVRAGKFIARKN--WIIVGSDDFRIRVFN   83 (814)
T ss_dssp             EEEEEECS-CEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEEEGGGT--EEEEEETTSEEEEEE
T ss_pred             eeeecCCC-ceEEEEECCCCCEEEEEeCCCEEEEEECCCCceEEEEecCCCcEEEEEEeCCCC--EEEEEeCCCeEEEEE
Confidence            57889999 89999999999999999999999999998764332221    111111112221  222334578999999


Q ss_pred             CCCcCcccccccccCCeEEEEEecCCCcEEEEEcCCCeEEEEEcCCCCcceEEEeeccCCceeEEEeccCCCCeEEEEcC
Q 021657           78 GPSVGPRGIYNGHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSA  157 (309)
Q Consensus        78 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~  157 (309)
                      ..+.+.+..+.+|...|++++|+|++ .+|++++.||.|++||+.++. .....+.+|...|.+++|+|.++..+++++.
T Consensus        84 ~~~~~~~~~~~~~~~~v~~~~~s~~~-~~l~~~~~dg~i~vw~~~~~~-~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~  161 (814)
T 3mkq_A           84 YNTGEKVVDFEAHPDYIRSIAVHPTK-PYVLSGSDDLTVKLWNWENNW-ALEQTFEGHEHFVMCVAFNPKDPSTFASGCL  161 (814)
T ss_dssp             TTTCCEEEEEECCSSCEEEEEECSSS-SEEEEEETTSEEEEEEGGGTS-EEEEEEECCSSCEEEEEEETTEEEEEEEEET
T ss_pred             CCCCcEEEEEecCCCCEEEEEEeCCC-CEEEEEcCCCEEEEEECCCCc-eEEEEEcCCCCcEEEEEEEcCCCCEEEEEeC
Confidence            99999999999999999999999998 789999999999999998763 2566778899999999999966789999999


Q ss_pred             CCcEEEEecCCCCCCCCCCceeeeccCC-CCeeEEEEec--CCCcEEEEecCCCcEEEEeCCcccccccCCCCCcCCCCc
Q 021657          158 DNSVRMFDRRNLTSNGVGSPINKFEGHS-AAVLCVQWSP--DKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAG  234 (309)
Q Consensus       158 dg~i~i~d~~~~~~~~~~~~~~~~~~~~-~~v~~~~~~~--~~~~l~~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~  234 (309)
                      ||.|++||++.      +.....+..+. ..+.+++|+|  ++.. +++++.||.|++||++.               ..
T Consensus       162 dg~v~vwd~~~------~~~~~~~~~~~~~~v~~~~~~~~~~~~~-l~~~~~dg~i~~~d~~~---------------~~  219 (814)
T 3mkq_A          162 DRTVKVWSLGQ------STPNFTLTTGQERGVNYVDYYPLPDKPY-MITASDDLTIKIWDYQT---------------KS  219 (814)
T ss_dssp             TSEEEEEETTC------SSCSEEEECCCTTCCCEEEECCSTTCCE-EEEECTTSEEEEEETTT---------------TE
T ss_pred             CCeEEEEECCC------CcceeEEecCCCCCEEEEEEEECCCCCE-EEEEeCCCEEEEEECCC---------------Cc
Confidence            99999999988      66666665554 8899999999  8885 67999999999999987               34


Q ss_pred             eeeeecCCCcceeeEEEccCCCeEEEEecCCCCCCCCCCeEEEEEccccccCChhhHhHhhhcccceEEEeeeCC
Q 021657          235 LFFQHAGHRDKVVDFHWNASDPWTVVSVSDDCDSTGGGGTLQIWRMSDLIYRPQDEVLAELEKFKAHVISCTSKP  309 (309)
Q Consensus       235 ~~~~~~~~~~~v~~~~~~~~~~~~~~s~s~d~~s~~~dg~v~vw~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~P  309 (309)
                      .+..+.+|...|.+++|+|+++.++        +++.||.|++||+.      +++.+..+..|...|.+++|+|
T Consensus       220 ~~~~~~~~~~~v~~~~~~~~~~~l~--------~~~~dg~v~vwd~~------~~~~~~~~~~~~~~v~~~~~~~  280 (814)
T 3mkq_A          220 CVATLEGHMSNVSFAVFHPTLPIII--------SGSEDGTLKIWNSS------TYKVEKTLNVGLERSWCIATHP  280 (814)
T ss_dssp             EEEEEECCSSCEEEEEECSSSSEEE--------EEETTSCEEEEETT------TCSEEEEECCSSSSEEEEEECT
T ss_pred             EEEEEcCCCCCEEEEEEcCCCCEEE--------EEeCCCeEEEEECC------CCcEEEEeecCCCcEEEEEEcc
Confidence            5667788999999999999888655        44455999999998      6777888888999999999987

>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}

Probab=100.00  E-value=5e-38  Score=259.06  Aligned_cols=264  Identities=16%  Similarity=0.310  Sum_probs=207.2

Q ss_pred             ceEEEEECCCCC-EEEEe----------cCCCcEEEEeCCccccc---cccC---CccccccCCCCceeecCCCCCCCCc
Q 021657           11 AEFALAMCPTEP-YVLSG----------GKDKSVVLWSIQDHITS---SATD---PATAKSAGSSGSIIKQSPKPGDGND   73 (309)
Q Consensus        11 ~V~~~~~~~~~~-~l~t~----------~~dg~i~vwd~~~~~~~---~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~   73 (309)
                      .|.+++|+|+++ +|++|          +.|+.|+|||+.++...   ....   ............  .+..+..++.+
T Consensus        14 ~v~~~~~sp~g~~~l~~g~~~g~~~~~~~~d~~v~iw~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~--~l~~~~~dg~v   91 (416)
T 2pm9_A           14 RTATFAWSHDKIPLLVSGTVSGTVDANFSTDSSLELWSLLAADSEKPIASLQVDSKFNDLDWSHNNK--IIAGALDNGSL   91 (416)
T ss_dssp             ESCBCCBCSSSSCEEEEBCBSSCCCSSCCCCCCCEEEESSSGGGCSCSCCCCCSSCEEEEEECSSSS--CEEEEESSSCE
T ss_pred             hcceEeeCCCCCCEEEEEecCcccccccCCCCeEEEEEccCCCCCcEEEEEecCCceEEEEECCCCC--eEEEEccCCeE
Confidence            688999999987 99999          89999999999876421   1111   111111111111  22334457889


Q ss_pred             ccCCCCC----cCcccccccccCCeEEEEEecCCCcEEEEEcCCCeEEEEEcCCCC------cce-EEEeeccCCceeEE
Q 021657           74 KAADGPS----VGPRGIYNGHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGT------SPV-IKVEKAHDADLHCV  142 (309)
Q Consensus        74 ~~~~~~~----~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~------~~~-~~~~~~~~~~v~~~  142 (309)
                      .+|+...    .+.+..+.+|...|++++|+|+++.+|++++.||.|++||+.+.+      ... ......|...|.++
T Consensus        92 ~vw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~  171 (416)
T 2pm9_A           92 ELYSTNEANNAINSMARFSNHSSSVKTVKFNAKQDNVLASGGNNGEIFIWDMNKCTESPSNYTPLTPGQSMSSVDEVISL  171 (416)
T ss_dssp             EEECCSSTTSCCCEEEECCCSSSCCCEEEECSSSTTBEEEECSSSCEEBCBTTTTSSCTTTCCCBCCCCSCCSSCCCCEE
T ss_pred             EEeecccccccccchhhccCCccceEEEEEcCCCCCEEEEEcCCCeEEEEECCCCccccccccccccccccCCCCCeeEE
Confidence            9999887    457788889999999999999844899999999999999998765      211 22345788999999


Q ss_pred             EeccCCCCeEEEEcCCCcEEEEecCCCCCCCCCCceeeeccC------CCCeeEEEEecCCCcEEEEecCCC---cEEEE
Q 021657          143 DWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGH------SAAVLCVQWSPDKSSVFGSSAEDG---LLNIW  213 (309)
Q Consensus       143 ~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~------~~~v~~~~~~~~~~~l~~~~~~dg---~i~iw  213 (309)
                      +|+|..+.+|++++.||.|++||+++      ++.+..+..+      ...|.+++|+|++..++++++.|+   .|++|
T Consensus       172 ~~~~~~~~~l~~~~~dg~v~iwd~~~------~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~~~~i~~~  245 (416)
T 2pm9_A          172 AWNQSLAHVFASAGSSNFASIWDLKA------KKEVIHLSYTSPNSGIKQQLSVVEWHPKNSTRVATATGSDNDPSILIW  245 (416)
T ss_dssp             EECSSCTTEEEEESSSSCEEEEETTT------TEEEEEECCCCCSSCCCCCEEEEEECSSCTTEEEEEECCSSSCCCCEE
T ss_pred             EeCCCCCcEEEEEcCCCCEEEEECCC------CCcceEEeccccccccCCceEEEEECCCCCCEEEEEECCCCCceEEEE
Confidence            99993378999999999999999998      7888888766      788999999999876788999998   99999


Q ss_pred             eCCcccccccCCCCCcCCCCceeeeec-CCCcceeeEEEccCCCeEEEEecCCCCCCCCCCeEEEEEccccccCChhhHh
Q 021657          214 DYEKVGKKVEQGPRTTNYPAGLFFQHA-GHRDKVVDFHWNASDPWTVVSVSDDCDSTGGGGTLQIWRMSDLIYRPQDEVL  292 (309)
Q Consensus       214 d~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~~~~s~s~d~~s~~~dg~v~vw~~~~~~~~~~~~~~  292 (309)
                      |++....              ++..+. +|...|.+++|+|++..++++++.|       |.|++||+.      +++++
T Consensus       246 d~~~~~~--------------~~~~~~~~~~~~v~~~~~s~~~~~~l~s~~~d-------g~v~~wd~~------~~~~~  298 (416)
T 2pm9_A          246 DLRNANT--------------PLQTLNQGHQKGILSLDWCHQDEHLLLSSGRD-------NTVLLWNPE------SAEQL  298 (416)
T ss_dssp             ETTSTTS--------------CSBCCCSCCSSCEEEEEECSSCSSCEEEEESS-------SEEEEECSS------SCCEE
T ss_pred             eCCCCCC--------------CcEEeecCccCceeEEEeCCCCCCeEEEEeCC-------CCEEEeeCC------CCccc
Confidence            9987322              234455 7999999999999444456655554       999999998      67788


Q ss_pred             HhhhcccceEEEeeeCC
Q 021657          293 AELEKFKAHVISCTSKP  309 (309)
Q Consensus       293 ~~~~~h~~~v~~~~~~P  309 (309)
                      .++.+|.+.|.+++|+|
T Consensus       299 ~~~~~~~~~v~~~~~s~  315 (416)
T 2pm9_A          299 SQFPARGNWCFKTKFAP  315 (416)
T ss_dssp             EEEECSSSCCCCEEECT
T ss_pred             eeecCCCCceEEEEECC
Confidence            88999999999999987

>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A

Probab=100.00  E-value=1e-36  Score=251.55  Aligned_cols=247  Identities=19%  Similarity=0.381  Sum_probs=191.8

Q ss_pred             cCCCCCcceEEEEECCCCCEEEEecCCCcEEEEeCCccccccccCCccccccCCCCceeecCCCCCCCCcccCCCCCc-C
Q 021657            4 LTGHQDNAEFALAMCPTEPYVLSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSV-G   82 (309)
Q Consensus         4 l~~H~~~~V~~~~~~~~~~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~   82 (309)
                      +.+|.+ .|++|+|+|+|++|++|+.||+|+|||++++......................+..+..++.+.+|+.... .
T Consensus       143 ~~~~~~-~V~sv~fspdg~~lasgs~Dg~v~iWd~~~~~~~~~~~~h~~~v~~~s~~~~~l~sgs~d~~i~~~d~~~~~~  221 (420)
T 4gga_A          143 MEQPGE-YISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKRLRNMTSHSARVGSLSWNSYILSSGSRSGHIHHHDVRVAEH  221 (420)
T ss_dssp             CCSTTC-CEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEETTEEEEEETTSEEEEEETTSSSC
T ss_pred             ecCCCC-cEEEEEECCCCCEEEEEECCCeEEEEEcCCCcEEEEEeCCCCceEEEeeCCCEEEEEeCCCceeEeeecccce
Confidence            456777 89999999999999999999999999999875433322211110000011122334556777888877653 4


Q ss_pred             cccccccccCCeEEEEEecCCCcEEEEEcCCCeEEEEEcCCCCc--ceEEEeeccCCceeEEEeccCCCCeEEE--EcCC
Q 021657           83 PRGIYNGHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTS--PVIKVEKAHDADLHCVDWNPLDDNLILT--GSAD  158 (309)
Q Consensus        83 ~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~--~~~~~~~~~~~~v~~~~~~~~~~~~l~~--~~~d  158 (309)
                      .+..+.+|...+..+.|+|++ .++++++.|+.+++|+...++.  ........|...|.+++|+|.+..++++  |+.|
T Consensus       222 ~~~~~~~h~~~~~~~~~~~~g-~~l~s~~~D~~v~i~~~~~~~~~~~~~~~~~~~~~~V~~~~~~p~~~~~la~~~gs~D  300 (420)
T 4gga_A          222 HVATLSGHSQEVCGLRWAPDG-RHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSD  300 (420)
T ss_dssp             EEEEEECCSSCEEEEEECTTS-SEEEEEETTSCEEEEESSCCSSCSCCSEEECCCSSCEEEEEECTTCTTEEEEEECTTT
T ss_pred             eeEEecccccceeeeeecCCC-CeeeeeeccccceEEeeccccccceeeeeecccCCceeeeeeCCCcccEEEEEeecCC
Confidence            457788999999999999998 8899999999999999987653  2345667889999999999966667665  4579


Q ss_pred             CcEEEEecCCCCCCCCCCceeeeccCCCCeeEEEEecCCCcEEEE-ecCCCcEEEEeCCcccccccCCCCCcCCCCceee
Q 021657          159 NSVRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWSPDKSSVFGS-SAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFF  237 (309)
Q Consensus       159 g~i~i~d~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~  237 (309)
                      +.|++||+++      ++.+..+..+ ..+.++.|+|++..++++ |+.|+.|+|||+++               ..++.
T Consensus       301 ~~I~iwd~~t------~~~~~~~~~~-~~v~~~~~~~~~~~lv~~sg~~d~~I~iwd~~~---------------~~~v~  358 (420)
T 4gga_A          301 RHIRIWNVCS------GACLSAVDAH-SQVCSILWSPHYKELISGHGFAQNQLVIWKYPT---------------MAKVA  358 (420)
T ss_dssp             CEEEEEETTT------TEEEEEEECS-SCEEEEEEETTTTEEEEEECTTTCCEEEEETTT---------------CCEEE
T ss_pred             CEEEEEeCCc------cccceeeccc-cceeeeeecCCCCeEEEEEecCCCEEEEEECCC---------------CcEEE
Confidence            9999999998      8888888754 578899999999986644 34799999999987               45677


Q ss_pred             eecCCCcceeeEEEccCCCeEEEEecCCCCCCCCCCeEEEEEccc
Q 021657          238 QHAGHRDKVVDFHWNASDPWTVVSVSDDCDSTGGGGTLQIWRMSD  282 (309)
Q Consensus       238 ~~~~~~~~v~~~~~~~~~~~~~~s~s~d~~s~~~dg~v~vw~~~~  282 (309)
                      .+.+|...|++++|+|++.+++        ||+.|++|+|||+.+
T Consensus       359 ~l~gH~~~V~~l~~spdg~~l~--------S~s~D~tvriWdv~~  395 (420)
T 4gga_A          359 ELKGHTSRVLSLTMSPDGATVA--------SAAADETLRLWRCFE  395 (420)
T ss_dssp             EECCCSSCEEEEEECTTSSCEE--------EEETTTEEEEECCSC
T ss_pred             EEcCCCCCEEEEEEcCCCCEEE--------EEecCCeEEEEECCC
Confidence            8899999999999999988655        555559999999984

>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A

Probab=100.00  E-value=9.9e-38  Score=257.65  Aligned_cols=259  Identities=14%  Similarity=0.143  Sum_probs=200.9

Q ss_pred             ceEEEEECCCCCEEEEecCCCcEEEEeCCccccccccCCcccc---ccCCCCceeecCCCCCCCCcccCCCCCcCccccc
Q 021657           11 AEFALAMCPTEPYVLSGGKDKSVVLWSIQDHITSSATDPATAK---SAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIY   87 (309)
Q Consensus        11 ~V~~~~~~~~~~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   87 (309)
                      .+++++|+|++++|++++.||.|++||+.+.............   ......  ..+..+..++.+.+|+..+.+....+
T Consensus        58 ~~~~~~~s~~g~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~--~~l~~~~~dg~i~iwd~~~~~~~~~~  135 (420)
T 3vl1_A           58 AGKGNTFEKVGSHLYKARLDGHDFLFNTIIRDGSKMLKRADYTAVDTAKLQM--RRFILGTTEGDIKVLDSNFNLQREID  135 (420)
T ss_dssp             CCTTCEEEEEETTEEEEEETTEEEEEECCSEETTTTSCSCCEEEEEEECSSS--CEEEEEETTSCEEEECTTSCEEEEET
T ss_pred             cccceeeeecCCeEEEEEcCCcEEEEEecccceeeEEecCCceEEEEEecCC--CEEEEEECCCCEEEEeCCCcceeeec
Confidence            3457899999999999999999999999876443333222111   111111  12333456789999999998888888


Q ss_pred             ccccCCeEEEEEecCCCcEEEEEcCCCeEEEEEcCCCCcceEEEeeccCCceeEEEeccCCCCeEEEEcCCCcEEEEecC
Q 021657           88 NGHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRR  167 (309)
Q Consensus        88 ~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~  167 (309)
                      .+|...|++++|+|++ .+|++|+.|+.|++||+++++  ....+.+|...|.+++|+| ++.+|++++.||.|++||++
T Consensus       136 ~~h~~~v~~~~~~~~~-~~l~s~s~d~~i~iwd~~~~~--~~~~~~~h~~~v~~~~~~~-~~~~l~s~~~d~~v~iwd~~  211 (420)
T 3vl1_A          136 QAHVSEITKLKFFPSG-EALISSSQDMQLKIWSVKDGS--NPRTLIGHRATVTDIAIID-RGRNVLSASLDGTIRLWECG  211 (420)
T ss_dssp             TSSSSCEEEEEECTTS-SEEEEEETTSEEEEEETTTCC--CCEEEECCSSCEEEEEEET-TTTEEEEEETTSCEEEEETT
T ss_pred             ccccCccEEEEECCCC-CEEEEEeCCCeEEEEeCCCCc--CceEEcCCCCcEEEEEEcC-CCCEEEEEcCCCcEEEeECC
Confidence            9999999999999998 789999999999999999887  5677789999999999999 99999999999999999999


Q ss_pred             CCCCCCCCCceeeecc---CCCCeeE---------------------EEEecCCCcEEEEecCCCcEEEEeCCccccccc
Q 021657          168 NLTSNGVGSPINKFEG---HSAAVLC---------------------VQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVE  223 (309)
Q Consensus       168 ~~~~~~~~~~~~~~~~---~~~~v~~---------------------~~~~~~~~~l~~~~~~dg~i~iwd~~~~~~~~~  223 (309)
                      +      ++.+..+..   +...+.+                     ++|+|++++ +++++.||.|++||++....   
T Consensus       212 ~------~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~-l~~~~~dg~i~i~d~~~~~~---  281 (420)
T 3vl1_A          212 T------GTTIHTFNRKENPHDGVNSIALFVGTDRQLHEISTSKKNNLEFGTYGKY-VIAGHVSGVITVHNVFSKEQ---  281 (420)
T ss_dssp             T------TEEEEEECBTTBTTCCEEEEEEEECCCSSCGGGCCCCCCTTCSSCTTEE-EEEEETTSCEEEEETTTCCE---
T ss_pred             C------CceeEEeecCCCCCCCccEEEEecCCcceeeecccCcccceEEcCCCCE-EEEEcCCCeEEEEECCCCce---
Confidence            8      777777764   3334444                     455778885 67999999999999987221   


Q ss_pred             CCCCCcCCCCceeeeecCCCcceeeEEEccCCCeEEEEecCCCCCCCCCCeEEEEEccccccCChhhHhHhhhc-ccceE
Q 021657          224 QGPRTTNYPAGLFFQHAGHRDKVVDFHWNASDPWTVVSVSDDCDSTGGGGTLQIWRMSDLIYRPQDEVLAELEK-FKAHV  302 (309)
Q Consensus       224 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~s~d~~s~~~dg~v~vw~~~~~~~~~~~~~~~~~~~-h~~~v  302 (309)
                                 .......|...|.+++|+|++..++++++.|       |.|++||+..     ...++..+.. |...|
T Consensus       282 -----------~~~~~~~~~~~v~~~~~~~~~~~~l~~g~~d-------g~i~vwd~~~-----~~~~~~~~~~~~~~~v  338 (420)
T 3vl1_A          282 -----------TIQLPSKFTCSCNSLTVDGNNANYIYAGYEN-------GMLAQWDLRS-----PECPVGEFLINEGTPI  338 (420)
T ss_dssp             -----------EEEECCTTSSCEEEEEECSSCTTEEEEEETT-------SEEEEEETTC-----TTSCSEEEEESTTSCE
T ss_pred             -----------eEEcccccCCCceeEEEeCCCCCEEEEEeCC-------CeEEEEEcCC-----CcCchhhhhccCCCCc
Confidence                       1222346888999999999998566655555       9999999983     2234666766 56778


Q ss_pred             EEeeeC
Q 021657          303 ISCTSK  308 (309)
Q Consensus       303 ~~~~~~  308 (309)
                      .++.|.
T Consensus       339 ~~~~~~  344 (420)
T 3vl1_A          339 NNVYFA  344 (420)
T ss_dssp             EEEEEE
T ss_pred             eEEEeC
Confidence            887664

>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}

Probab=100.00  E-value=2.2e-36  Score=245.03  Aligned_cols=232  Identities=20%  Similarity=0.345  Sum_probs=183.1

Q ss_pred             cccCCCCCcceEEEEECCC---CCEEEEecCCCcEEEEeCCccccccccCCccccccCCCCceeecCCCCCCCCcccCCC
Q 021657            2 EILTGHQDNAEFALAMCPT---EPYVLSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADG   78 (309)
Q Consensus         2 ~~l~~H~~~~V~~~~~~~~---~~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   78 (309)
                      +.+++|.+ .|++++|+|+   |++|++|+.||.|+|||+.+.                                     
T Consensus        33 ~~~~~h~~-~v~~~~~~~~~~~g~~l~~~~~dg~i~iw~~~~~-------------------------------------   74 (368)
T 3mmy_A           33 EVTSSPDD-SIGCLSFSPPTLPGNFLIAGSWANDVRCWEVQDS-------------------------------------   74 (368)
T ss_dssp             ECSSCCSS-CEEEEEECCTTSSSEEEEEEETTSEEEEEEECTT-------------------------------------
T ss_pred             EeccCCCC-ceEEEEEcCCCCCceEEEEECCCCcEEEEEcCCC-------------------------------------
Confidence            56889999 8999999999   699999999999999999741                                     


Q ss_pred             CCcCcccccccccCCeEEEEEecCCCcEEEEEcCCCeEEEEEcCCCCcceEEEeeccCCceeEEEe--ccCCCCeEEEEc
Q 021657           79 PSVGPRGIYNGHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDW--NPLDDNLILTGS  156 (309)
Q Consensus        79 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~--~~~~~~~l~~~~  156 (309)
                       .......+.+|...|++++|+|++ .+|++++.||.|++||+++++  . .....|...|.+++|  +| ++.+|++++
T Consensus        75 -~~~~~~~~~~h~~~v~~~~~~~~~-~~l~s~~~dg~v~iwd~~~~~--~-~~~~~~~~~v~~~~~~~~~-~~~~l~~~~  148 (368)
T 3mmy_A           75 -GQTIPKAQQMHTGPVLDVCWSDDG-SKVFTASCDKTAKMWDLSSNQ--A-IQIAQHDAPVKTIHWIKAP-NYSCVMTGS  148 (368)
T ss_dssp             -SCEEEEEEEECSSCEEEEEECTTS-SEEEEEETTSEEEEEETTTTE--E-EEEEECSSCEEEEEEEECS-SCEEEEEEE
T ss_pred             -CceeEEEeccccCCEEEEEECcCC-CEEEEEcCCCcEEEEEcCCCC--c-eeeccccCceEEEEEEeCC-CCCEEEEcc
Confidence             111225667899999999999988 889999999999999998776  3 335679999999999  88 889999999


Q ss_pred             CCCcEEEEecCCCCCCCCCCceeeeccCC-----------------------------------------CCeeEEEEec
Q 021657          157 ADNSVRMFDRRNLTSNGVGSPINKFEGHS-----------------------------------------AAVLCVQWSP  195 (309)
Q Consensus       157 ~dg~i~i~d~~~~~~~~~~~~~~~~~~~~-----------------------------------------~~v~~~~~~~  195 (309)
                      .||.|++||+++      ++.+..+..+.                                         ..+.++++.+
T Consensus       149 ~dg~i~vwd~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  222 (368)
T 3mmy_A          149 WDKTLKFWDTRS------SNPMMVLQLPERCYCADVIYPMAVVATAERGLIVYQLENQPSEFRRIESPLKHQHRCVAIFK  222 (368)
T ss_dssp             TTSEEEEECSSC------SSCSEEEECSSCEEEEEEETTEEEEEEGGGCEEEEECSSSCEEEEECCCSCSSCEEEEEEEE
T ss_pred             CCCcEEEEECCC------CcEEEEEecCCCceEEEecCCeeEEEeCCCcEEEEEeccccchhhhccccccCCCceEEEcc
Confidence            999999999998      55555554332                                         2334455544


Q ss_pred             CCCc---EEEEecCCCcEEEEeCCcccccccCCCCCcCCCCceeeeecCCCc------------ceeeEEEccCCCeEEE
Q 021657          196 DKSS---VFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRD------------KVVDFHWNASDPWTVV  260 (309)
Q Consensus       196 ~~~~---l~~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------~v~~~~~~~~~~~~~~  260 (309)
                      +...   .+++++.||.|++||++....            ......+.+|..            +|.+++|+|++.+++ 
T Consensus       223 ~~~~~~~~~~~~~~dg~i~i~~~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~-  289 (368)
T 3mmy_A          223 DKQNKPTGFALGSIEGRVAIHYINPPNP------------AKDNFTFKCHRSNGTNTSAPQDIYAVNGIAFHPVHGTLA-  289 (368)
T ss_dssp             CTTSCEEEEEEEETTSEEEEEESSCSCH------------HHHSEEEECSEEC----CCCEEECCEEEEEECTTTCCEE-
T ss_pred             cCCCCCCeEEEecCCCcEEEEecCCCCc------------cccceeeeeeecccccccccccccceEEEEEecCCCEEE-
Confidence            4332   256888888999998876321            123445555554            799999999887655 


Q ss_pred             EecCCCCCCCCCCeEEEEEccccccCChhhHhHhhhcccceEEEeeeCC
Q 021657          261 SVSDDCDSTGGGGTLQIWRMSDLIYRPQDEVLAELEKFKAHVISCTSKP  309 (309)
Q Consensus       261 s~s~d~~s~~~dg~v~vw~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~P  309 (309)
                             +|+.||.|++||+.      +++++..+.+|..+|.+++|+|
T Consensus       290 -------s~~~dg~i~iwd~~------~~~~~~~~~~~~~~v~~~~~s~  325 (368)
T 3mmy_A          290 -------TVGSDGRFSFWDKD------ARTKLKTSEQLDQPISACCFNH  325 (368)
T ss_dssp             -------EEETTSCEEEEETT------TTEEEEECCCCSSCEEEEEECT
T ss_pred             -------EEccCCeEEEEECC------CCcEEEEecCCCCCceEEEECC
Confidence                   44555999999999      7888899999999999999997

>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}

Probab=100.00  E-value=1.5e-36  Score=240.84  Aligned_cols=257  Identities=20%  Similarity=0.242  Sum_probs=202.8

Q ss_pred             cccCCCCCcceEEEEECCCCCEEEEecCCCcEEEEeCCccccccccC----CccccccCCCCceeecCCCCCCCCcccCC
Q 021657            2 EILTGHQDNAEFALAMCPTEPYVLSGGKDKSVVLWSIQDHITSSATD----PATAKSAGSSGSIIKQSPKPGDGNDKAAD   77 (309)
Q Consensus         2 ~~l~~H~~~~V~~~~~~~~~~~l~t~~~dg~i~vwd~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   77 (309)
                      +.|++|.+ .|++++| |++++|++|+.||.|++||+.+........    ............  .+..+..++.+.+|+
T Consensus        12 ~~l~~h~~-~v~~~~~-~~~~~l~s~~~dg~v~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~--~l~~~~~dg~i~~~~   87 (313)
T 3odt_A           12 ATLKGHDQ-DVRDVVA-VDDSKVASVSRDGTVRLWSKDDQWLGTVVYTGQGFLNSVCYDSEKE--LLLFGGKDTMINGVP   87 (313)
T ss_dssp             EEECCCSS-CEEEEEE-EETTEEEEEETTSEEEEEEESSSEEEEEEEECSSCEEEEEEETTTT--EEEEEETTSCEEEEE
T ss_pred             HHhhCCCC-CcEEEEe-cCCCEEEEEEcCCcEEEEECCCCEEEEEeecCCccEEEEEECCCCC--EEEEecCCCeEEEEE
Confidence            57899999 8999999 999999999999999999998763222211    111111111111  222234466666555


Q ss_pred             C---CCcCcccccccccCCeEEEEEecCCCcEEEEEcCCCeEEEEEcCCCCcceEEEeeccCCceeEEEeccCCCCeEEE
Q 021657           78 G---PSVGPRGIYNGHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILT  154 (309)
Q Consensus        78 ~---~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~  154 (309)
                      .   ...+....+.+|...|.++.|.  + .+|++++.||.|++||  ..+  ....+..|...+.+++|.|.+++.+++
T Consensus        88 ~~~~~~~~~~~~~~~~~~~i~~~~~~--~-~~l~~~~~d~~i~~~d--~~~--~~~~~~~~~~~v~~~~~~~~~~~~l~~  160 (313)
T 3odt_A           88 LFATSGEDPLYTLIGHQGNVCSLSFQ--D-GVVISGSWDKTAKVWK--EGS--LVYNLQAHNASVWDAKVVSFSENKFLT  160 (313)
T ss_dssp             TTCCTTSCC-CEECCCSSCEEEEEEE--T-TEEEEEETTSEEEEEE--TTE--EEEEEECCSSCEEEEEEEETTTTEEEE
T ss_pred             eeecCCCCcccchhhcccCEEEEEec--C-CEEEEEeCCCCEEEEc--CCc--EEEecccCCCceeEEEEccCCCCEEEE
Confidence            4   4446677888999999999993  4 6899999999999999  333  567778899999999998878899999


Q ss_pred             EcCCCcEEEEecCCCCCCCCCCceeeecc-CCCCeeEEEEecCCCcEEEEecCCCcEEEEeCCcccccccCCCCCcCCCC
Q 021657          155 GSADNSVRMFDRRNLTSNGVGSPINKFEG-HSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPA  233 (309)
Q Consensus       155 ~~~dg~i~i~d~~~~~~~~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~  233 (309)
                      ++.||.|++||.        .+.+..+.. +...+.+++|+|++.  +++++.||.|++||++.               .
T Consensus       161 ~~~d~~i~i~d~--------~~~~~~~~~~~~~~i~~~~~~~~~~--~~~~~~dg~i~i~d~~~---------------~  215 (313)
T 3odt_A          161 ASADKTIKLWQN--------DKVIKTFSGIHNDVVRHLAVVDDGH--FISCSNDGLIKLVDMHT---------------G  215 (313)
T ss_dssp             EETTSCEEEEET--------TEEEEEECSSCSSCEEEEEEEETTE--EEEEETTSEEEEEETTT---------------C
T ss_pred             EECCCCEEEEec--------CceEEEEeccCcccEEEEEEcCCCe--EEEccCCCeEEEEECCc---------------h
Confidence            999999999993        456677776 889999999999998  46899999999999987               4


Q ss_pred             ceeeeecCCCcceeeEEEccCCCeEEEEecCCCCCCCCCCeEEEEEccccccCChhhHhHhhhcccceEEEeeeCC
Q 021657          234 GLFFQHAGHRDKVVDFHWNASDPWTVVSVSDDCDSTGGGGTLQIWRMSDLIYRPQDEVLAELEKFKAHVISCTSKP  309 (309)
Q Consensus       234 ~~~~~~~~~~~~v~~~~~~~~~~~~~~s~s~d~~s~~~dg~v~vw~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~P  309 (309)
                      ..+..+.+|...|.+++|+|++ . +++++       .||.|++||+.      +++++..+..|...|.+++|+|
T Consensus       216 ~~~~~~~~~~~~i~~~~~~~~~-~-l~~~~-------~dg~v~iwd~~------~~~~~~~~~~~~~~i~~~~~~~  276 (313)
T 3odt_A          216 DVLRTYEGHESFVYCIKLLPNG-D-IVSCG-------EDRTVRIWSKE------NGSLKQVITLPAISIWSVDCMS  276 (313)
T ss_dssp             CEEEEEECCSSCEEEEEECTTS-C-EEEEE-------TTSEEEEECTT------TCCEEEEEECSSSCEEEEEECT
T ss_pred             hhhhhhhcCCceEEEEEEecCC-C-EEEEe-------cCCEEEEEECC------CCceeEEEeccCceEEEEEEcc
Confidence            4567778899999999999988 4 44444       44999999999      6778888899999999999987

>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}

Probab=100.00  E-value=2e-36  Score=248.30  Aligned_cols=239  Identities=18%  Similarity=0.336  Sum_probs=191.3

Q ss_pred             CCCcceEEEEECCCCCEEEEecCCCcEEEEeCCccccccccCCc----cccccCCCCceeecCCCCCCCCcccCCCC-Cc
Q 021657            7 HQDNAEFALAMCPTEPYVLSGGKDKSVVLWSIQDHITSSATDPA----TAKSAGSSGSIIKQSPKPGDGNDKAADGP-SV   81 (309)
Q Consensus         7 H~~~~V~~~~~~~~~~~l~t~~~dg~i~vwd~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~   81 (309)
                      |.+ .|++++|+|++++|++|+.||.|++||+.++.........    .....  .  ...+..+..++.+.+|+.. ..
T Consensus       133 ~~~-~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~--~--~~~l~~~~~dg~i~i~d~~~~~  207 (401)
T 4aez_A          133 EST-YVASVKWSHDGSFLSVGLGNGLVDIYDVESQTKLRTMAGHQARVGCLSW--N--RHVLSSGSRSGAIHHHDVRIAN  207 (401)
T ss_dssp             TTC-CEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEE--E--TTEEEEEETTSEEEEEETTSSS
T ss_pred             CCC-CEEEEEECCCCCEEEEECCCCeEEEEECcCCeEEEEecCCCCceEEEEE--C--CCEEEEEcCCCCEEEEecccCc
Confidence            666 8999999999999999999999999999876433322211    11111  1  1233445667899999998 45


Q ss_pred             CcccccccccCCeEEEEEecCCCcEEEEEcCCCeEEEEEcCCCCcceEEEeeccCCceeEEEeccCCCCeEEEEc--CCC
Q 021657           82 GPRGIYNGHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGS--ADN  159 (309)
Q Consensus        82 ~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~--~dg  159 (309)
                      .....+.+|...|.+++|+|++ .+|++|+.||.|++||+++++  ....+..|...|.+++|+|....++++++  .|+
T Consensus       208 ~~~~~~~~~~~~v~~~~~~~~~-~~l~s~~~d~~v~iwd~~~~~--~~~~~~~~~~~v~~~~~~p~~~~ll~~~~gs~d~  284 (401)
T 4aez_A          208 HQIGTLQGHSSEVCGLAWRSDG-LQLASGGNDNVVQIWDARSSI--PKFTKTNHNAAVKAVAWCPWQSNLLATGGGTMDK  284 (401)
T ss_dssp             CEEEEEECCSSCEEEEEECTTS-SEEEEEETTSCEEEEETTCSS--EEEEECCCSSCCCEEEECTTSTTEEEEECCTTTC
T ss_pred             ceeeEEcCCCCCeeEEEEcCCC-CEEEEEeCCCeEEEccCCCCC--ccEEecCCcceEEEEEECCCCCCEEEEecCCCCC
Confidence            6677888999999999999988 889999999999999999877  67777889999999999994446677765  799


Q ss_pred             cEEEEecCCCCCCCCCCceeeeccCCCCeeEEEEecCCCcEEEE-ecCCCcEEEEeCCcccccccCCCCCcCCCCceeee
Q 021657          160 SVRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWSPDKSSVFGS-SAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQ  238 (309)
Q Consensus       160 ~i~i~d~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~  238 (309)
                      .|++||+++      ++++..+. +...|.+++|+|+++.++++ |+.||.|++||++...             ......
T Consensus       285 ~i~i~d~~~------~~~~~~~~-~~~~v~~~~~s~~~~~l~~~~g~~dg~i~v~~~~~~~-------------~~~~~~  344 (401)
T 4aez_A          285 QIHFWNAAT------GARVNTVD-AGSQVTSLIWSPHSKEIMSTHGFPDNNLSIWSYSSSG-------------LTKQVD  344 (401)
T ss_dssp             EEEEEETTT------CCEEEEEE-CSSCEEEEEECSSSSEEEEEECTTTCEEEEEEEETTE-------------EEEEEE
T ss_pred             EEEEEECCC------CCEEEEEe-CCCcEEEEEECCCCCeEEEEeecCCCcEEEEecCCcc-------------ceeEEE
Confidence            999999998      88888886 56789999999999975533 5589999999998621             123445


Q ss_pred             ecCCCcceeeEEEccCCCeEEEEecCCCCCCCCCCeEEEEEcc
Q 021657          239 HAGHRDKVVDFHWNASDPWTVVSVSDDCDSTGGGGTLQIWRMS  281 (309)
Q Consensus       239 ~~~~~~~v~~~~~~~~~~~~~~s~s~d~~s~~~dg~v~vw~~~  281 (309)
                      +.+|...|.+++|+|++.+++        +++.||.|++|++.
T Consensus       345 ~~~h~~~v~~~~~s~dg~~l~--------s~~~dg~i~iw~~~  379 (401)
T 4aez_A          345 IPAHDTRVLYSALSPDGRILS--------TAASDENLKFWRVY  379 (401)
T ss_dssp             EECCSSCCCEEEECTTSSEEE--------EECTTSEEEEEECC
T ss_pred             ecCCCCCEEEEEECCCCCEEE--------EEeCCCcEEEEECC
Confidence            678999999999999888665        55566999999998

>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}

Probab=100.00  E-value=2.4e-36  Score=244.96  Aligned_cols=274  Identities=14%  Similarity=0.173  Sum_probs=212.5

Q ss_pred             cccCCCCCcceEEEEECCCCCEEEEecCCCcEEEEeCCccccccccCC----ccccccCCCCceeecCCCCCCCCcccCC
Q 021657            2 EILTGHQDNAEFALAMCPTEPYVLSGGKDKSVVLWSIQDHITSSATDP----ATAKSAGSSGSIIKQSPKPGDGNDKAAD   77 (309)
Q Consensus         2 ~~l~~H~~~~V~~~~~~~~~~~l~t~~~dg~i~vwd~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~   77 (309)
                      ..|++|.+ .|++++|+|++++|++|+.||.|++||+.++........    ...........  .+..+..++.+.+|+
T Consensus        26 ~~l~~h~~-~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~--~l~s~~~dg~i~iwd  102 (369)
T 3zwl_B           26 IKLTGHER-PLTQVKYNKEGDLLFSCSKDSSASVWYSLNGERLGTLDGHTGTIWSIDVDCFTK--YCVTGSADYSIKLWD  102 (369)
T ss_dssp             EEEECCSS-CEEEEEECTTSCEEEEEESSSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSS--EEEEEETTTEEEEEE
T ss_pred             EEEEEeec-eEEEEEEcCCCCEEEEEeCCCEEEEEeCCCchhhhhhhhcCCcEEEEEEcCCCC--EEEEEeCCCeEEEEE
Confidence            35889999 899999999999999999999999999987744333221    11111111111  223345578899999


Q ss_pred             CCCcCcccccccccCCeEEEEEecCCCcEEEEEcCC-----CeEEEEEcCCCCcc---------eEEEeeccCC--ceeE
Q 021657           78 GPSVGPRGIYNGHEDTVEDVTFCPSSAQEFCSVGDD-----SCLILWDARVGTSP---------VIKVEKAHDA--DLHC  141 (309)
Q Consensus        78 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d-----g~i~iwd~~~~~~~---------~~~~~~~~~~--~v~~  141 (309)
                      ..+.+.+..+. +...|.+++|+|++ .+|++++.+     |.|++||+......         ....+..|..  .+.+
T Consensus       103 ~~~~~~~~~~~-~~~~v~~~~~~~~~-~~l~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  180 (369)
T 3zwl_B          103 VSNGQCVATWK-SPVPVKRVEFSPCG-NYFLAILDNVMKNPGSINIYEIERDSATHELTKVSEEPIHKIITHEGLDAATV  180 (369)
T ss_dssp             TTTCCEEEEEE-CSSCEEEEEECTTS-SEEEEEECCBTTBCCEEEEEEEEECTTTCCEEEECSSCSEEEECCTTCCCEEE
T ss_pred             CCCCcEEEEee-cCCCeEEEEEccCC-CEEEEecCCccCCCCEEEEEEecCCccceeecccccceeeeccCCcCccceeE
Confidence            99998888777 88899999999998 789999888     99999999765421         2233445555  8999


Q ss_pred             EEeccCCCCeEEEEcCCCcEEEEecCCCCCCCCCCceeeeccCCCCeeEEEEecCCCcEEEEecCCCcEEEEeCCccccc
Q 021657          142 VDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKK  221 (309)
Q Consensus       142 ~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~dg~i~iwd~~~~~~~  221 (309)
                      ++|+| ++++|++++.||.|++||+++.     .+.+..+..|...|.+++|+|++.+ |++++.|+.|++||++.    
T Consensus       181 ~~~~~-~~~~l~~~~~dg~i~i~d~~~~-----~~~~~~~~~~~~~v~~~~~~~~~~~-l~~~~~d~~i~v~d~~~----  249 (369)
T 3zwl_B          181 AGWST-KGKYIIAGHKDGKISKYDVSNN-----YEYVDSIDLHEKSISDMQFSPDLTY-FITSSRDTNSFLVDVST----  249 (369)
T ss_dssp             EEECG-GGCEEEEEETTSEEEEEETTTT-----TEEEEEEECCSSCEEEEEECTTSSE-EEEEETTSEEEEEETTT----
T ss_pred             EEEcC-CCCEEEEEcCCCEEEEEECCCC-----cEeEEEEecCCCceeEEEECCCCCE-EEEecCCceEEEEECCC----
Confidence            99999 9999999999999999999873     4677888889999999999999996 56899999999999987    


Q ss_pred             ccCCCCCcCCCCceeeeecCCCcceeeEEEccCCCeEEEEecCCCC------CCCCCCeEEEEEccccccCChhhHhHhh
Q 021657          222 VEQGPRTTNYPAGLFFQHAGHRDKVVDFHWNASDPWTVVSVSDDCD------STGGGGTLQIWRMSDLIYRPQDEVLAEL  295 (309)
Q Consensus       222 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~s~d~~------s~~~dg~v~vw~~~~~~~~~~~~~~~~~  295 (309)
                                 ...+..+. +...+..++|+|++.+++++++++..      .......+++||+.      .++++..+
T Consensus       250 -----------~~~~~~~~-~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~d~~------~~~~~~~~  311 (369)
T 3zwl_B          250 -----------LQVLKKYE-TDCPLNTAVITPLKEFIILGGGQEAKDVTTTSANEGKFEARFYHKI------FEEEIGRV  311 (369)
T ss_dssp             -----------CCEEEEEE-CSSCEEEEEECSSSSEEEEEECCC-------------CEEEEEETT------TCCEEEEE
T ss_pred             -----------Cceeeeec-CCCCceeEEecCCCceEEEeecCCCceEEEEecCCCcceeEEEecC------CCcchhhe
Confidence                       23333444 77889999999999887754433200      00111189999998      67788889


Q ss_pred             hcccceEEEeeeCC
Q 021657          296 EKFKAHVISCTSKP  309 (309)
Q Consensus       296 ~~h~~~v~~~~~~P  309 (309)
                      .+|.+.|.+++|+|
T Consensus       312 ~~~~~~v~~~~~s~  325 (369)
T 3zwl_B          312 QGHFGPLNTVAISP  325 (369)
T ss_dssp             ECCSSCEEEEEECT
T ss_pred             ecccCcEEEEEECC
Confidence            99999999999987

>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}

Probab=100.00  E-value=6.8e-37  Score=247.16  Aligned_cols=278  Identities=15%  Similarity=0.206  Sum_probs=204.8

Q ss_pred             ccCCCCCcceEEEEECCCCCEE-EEecC---CCcEEEEeCCcccccccc-----CCccccccCCCC-ceeecCCCCCCCC
Q 021657            3 ILTGHQDNAEFALAMCPTEPYV-LSGGK---DKSVVLWSIQDHITSSAT-----DPATAKSAGSSG-SIIKQSPKPGDGN   72 (309)
Q Consensus         3 ~l~~H~~~~V~~~~~~~~~~~l-~t~~~---dg~i~vwd~~~~~~~~~~-----~~~~~~~~~~~~-~~~~~~~~~~~~~   72 (309)
                      .+++|.+ .|++++|+|++..+ ++|+.   ||.|+|||+.++......     ............ ....+..+..++.
T Consensus        13 ~~~~h~~-~v~~~~~~p~~~~l~~~~s~~~~d~~v~iw~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~   91 (357)
T 3i2n_A           13 IQKGFNY-TVFDCKWVPCSAKFVTMGNFARGTGVIQLYEIQHGDLKLLREIEKAKPIKCGTFGATSLQQRYLATGDFGGN   91 (357)
T ss_dssp             EEEECSS-CEEEEEECTTSSEEEEEEC--CCCEEEEEEEECSSSEEEEEEEEESSCEEEEECTTCCTTTCCEEEEETTSC
T ss_pred             hccCCCC-ceEEEEEcCCCceEEEecCccCCCcEEEEEeCCCCcccceeeecccCcEEEEEEcCCCCCCceEEEecCCCe
Confidence            4578998 89999999998655 56666   999999999876432111     111111122110 0122333456789


Q ss_pred             cccCCCCCcC-cccccccccCCeEEEEE------ecCCCcEEEEEcCCCeEEEEEcCCCCcceEEEeeccCC----ceeE
Q 021657           73 DKAADGPSVG-PRGIYNGHEDTVEDVTF------CPSSAQEFCSVGDDSCLILWDARVGTSPVIKVEKAHDA----DLHC  141 (309)
Q Consensus        73 ~~~~~~~~~~-~~~~~~~~~~~v~~~~~------~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~----~v~~  141 (309)
                      +.+|+..+.+ .+..+.+|...|.++.|      +|++ .+|++++.||.|++||+++++. ....+..|..    .+.+
T Consensus        92 i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~s~~~-~~l~~~~~d~~i~vwd~~~~~~-~~~~~~~~~~~~~~~v~~  169 (357)
T 3i2n_A           92 LHIWNLEAPEMPVYSVKGHKEIINAIDGIGGLGIGEGA-PEIVTGSRDGTVKVWDPRQKDD-PVANMEPVQGENKRDCWT  169 (357)
T ss_dssp             EEEECTTSCSSCSEEECCCSSCEEEEEEESGGGCC-CC-CEEEEEETTSCEEEECTTSCSS-CSEEECCCTTSCCCCEEE
T ss_pred             EEEEeCCCCCccEEEEEecccceEEEeeccccccCCCc-cEEEEEeCCCeEEEEeCCCCCC-cceeccccCCCCCCceEE
Confidence            9999999888 88889999999999965      5677 7899999999999999987763 2344444433    7889


Q ss_pred             EE----eccCCCCeEEEEcCCCcEEEEecCCCCCCCCCCceeeeccCCCCeeEEEEec---CCCcEEEEecCCCcEEEEe
Q 021657          142 VD----WNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWSP---DKSSVFGSSAEDGLLNIWD  214 (309)
Q Consensus       142 ~~----~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~---~~~~l~~~~~~dg~i~iwd  214 (309)
                      ++    |+| +++++++++.||.|++||+++      ++... ...+...|.+++|+|   ++.. +++++.||.|++||
T Consensus       170 ~~~~~~~~~-~~~~l~~~~~d~~i~i~d~~~------~~~~~-~~~~~~~v~~~~~~~~~~~~~~-l~~~~~dg~i~i~d  240 (357)
T 3i2n_A          170 VAFGNAYNQ-EERVVCAGYDNGDIKLFDLRN------MALRW-ETNIKNGVCSLEFDRKDISMNK-LVATSLEGKFHVFD  240 (357)
T ss_dssp             EEEECCCC--CCCEEEEEETTSEEEEEETTT------TEEEE-EEECSSCEEEEEESCSSSSCCE-EEEEESTTEEEEEE
T ss_pred             EEEEeccCC-CCCEEEEEccCCeEEEEECcc------Cceee-ecCCCCceEEEEcCCCCCCCCE-EEEECCCCeEEEEe
Confidence            98    788 999999999999999999998      55544 455788999999999   8885 56899999999999


Q ss_pred             CCcccccccCCCCCcCCCCceeeeecCCCcceeeEEEccCCCeEEEEecCCCCCCCCCCeEEEEEccccccCC-------
Q 021657          215 YEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKVVDFHWNASDPWTVVSVSDDCDSTGGGGTLQIWRMSDLIYRP-------  287 (309)
Q Consensus       215 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~s~d~~s~~~dg~v~vw~~~~~~~~~-------  287 (309)
                      ++......          ........+|...|.+++|+|++..++++++.|       |.|++||+.......       
T Consensus       241 ~~~~~~~~----------~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d-------g~i~iwd~~~~~~~~~~~~~g~  303 (357)
T 3i2n_A          241 MRTQHPTK----------GFASVSEKAHKSTVWQVRHLPQNRELFLTAGGA-------GGLHLWKYEYPIQRSKKDSEGI  303 (357)
T ss_dssp             EEEEETTT----------EEEEEEEECCSSCEEEEEEETTEEEEEEEEETT-------SEEEEEEEECCSCC--CCTTSC
T ss_pred             CcCCCccc----------ceeeeccCCCcCCEEEEEECCCCCcEEEEEeCC-------CcEEEeecCCCcccccccCCCC
Confidence            98722211          011223458999999999999888677766655       999999998532111       


Q ss_pred             ------hhhHhHhhhcccceEEEeeeCC
Q 021657          288 ------QDEVLAELEKFKAHVISCTSKP  309 (309)
Q Consensus       288 ------~~~~~~~~~~h~~~v~~~~~~P  309 (309)
                            +.+++..+.+|.++|.+++|+|
T Consensus       304 ~~~~~~~~~~~~~~~~~~~~v~~~~~s~  331 (357)
T 3i2n_A          304 EMGVAGSVSLLQNVTLSTQPISSLDWSP  331 (357)
T ss_dssp             CCCCCCEEEEEEEEECCSSCEEEEEECS
T ss_pred             ccccccccceeeccccCCCCeeEEEEcC
Confidence                  1146677889999999999987

>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A

Probab=100.00  E-value=2.9e-37  Score=245.21  Aligned_cols=218  Identities=21%  Similarity=0.361  Sum_probs=171.0

Q ss_pred             cccCCCCCcceEEEEECC--CCCEEEEecCCCcEEEEeCCccccccccCCccccccCCCCceeecCCCCCCCCcccCCCC
Q 021657            2 EILTGHQDNAEFALAMCP--TEPYVLSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGP   79 (309)
Q Consensus         2 ~~l~~H~~~~V~~~~~~~--~~~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   79 (309)
                      ..|++|.+ +|++++|+|  ++++|++|+.|++|++||++++                                      
T Consensus        51 ~~l~gH~~-~V~~v~~~~~~~~~~l~s~s~D~~v~iWd~~~~--------------------------------------   91 (316)
T 3bg1_A           51 ADLRGHEG-PVWQVAWAHPMYGNILASCSYDRKVIIWREENG--------------------------------------   91 (316)
T ss_dssp             EEEECCSS-CEEEEEECCGGGSSCEEEEETTSCEEEECCSSS--------------------------------------
T ss_pred             EEEcCCCc-cEEEEEeCCCCCCCEEEEEECCCEEEEEECCCC--------------------------------------
Confidence            46889999 899999986  4899999999999999998742                                      


Q ss_pred             CcCcccccccccCCeEEEEEecCC-CcEEEEEcCCCeEEEEEcCCCCc-ceEEEeeccCCceeEEEeccCC---------
Q 021657           80 SVGPRGIYNGHEDTVEDVTFCPSS-AQEFCSVGDDSCLILWDARVGTS-PVIKVEKAHDADLHCVDWNPLD---------  148 (309)
Q Consensus        80 ~~~~~~~~~~~~~~v~~~~~~~~~-~~~l~s~~~dg~i~iwd~~~~~~-~~~~~~~~~~~~v~~~~~~~~~---------  148 (309)
                      .......+.+|...|++++|+|++ ..+|++|+.|+.|++||++.... .....+.+|...|.+++|+| +         
T Consensus        92 ~~~~~~~~~~h~~~V~~v~~~p~~~g~~lasgs~D~~i~lwd~~~~~~~~~~~~~~~h~~~v~~~~~~~-~~~~~~~~~~  170 (316)
T 3bg1_A           92 TWEKSHEHAGHDSSVNSVCWAPHDYGLILACGSSDGAISLLTYTGEGQWEVKKINNAHTIGCNAVSWAP-AVVPGSLIDH  170 (316)
T ss_dssp             CCCEEEEECCCSSCCCEEEECCTTTCSCEEEECSSSCEEEEEECSSSCEEECCBTTSSSSCBCCCEECC-CCCC------
T ss_pred             cceEEEEccCCCCceEEEEECCCCCCcEEEEEcCCCCEEEEecCCCCCcceeeeeccccCCcceEEEcc-ccCCcccccc
Confidence            112334567899999999999982 27899999999999999987532 12345568889999999999 5         


Q ss_pred             --------CCeEEEEcCCCcEEEEecCCCCCCCCCCceeeeccCCCCeeEEEEecCC---CcEEEEecCCCcEEEEeCCc
Q 021657          149 --------DNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWSPDK---SSVFGSSAEDGLLNIWDYEK  217 (309)
Q Consensus       149 --------~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~---~~l~~~~~~dg~i~iwd~~~  217 (309)
                              +.+|++|+.|+.|++||++....   .+++..+.+|...|++++|+|++   ..+|++++.|++|++|+++.
T Consensus       171 ~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~---~~~~~~l~~h~~~V~~v~~sp~~~~~~~~las~s~D~~v~iw~~~~  247 (316)
T 3bg1_A          171 PSGQKPNYIKRFASGGCDNLIKLWKEEEDGQ---WKEEQKLEAHSDWVRDVAWAPSIGLPTSTIASCSQDGRVFIWTCDD  247 (316)
T ss_dssp             CCSCCCCCCCBEECCBTTSBCCEEEECTTSC---EEEEECCBCCSSCEEEEECCCCSSCSCCEEEEEETTCEEEEEECSS
T ss_pred             ccccCccccceEEEecCCCeEEEEEeCCCCc---cceeeecccCCCceEEEEecCCCCCCCceEEEEcCCCeEEEEEccC
Confidence                    46899999999999999975210   14677888999999999999986   23578999999999999876


Q ss_pred             ccccccCCCCCcCCCCceeeeecCCCcceeeEEEccCCCeEEEEecCCCCCCCCCCeEEEEEcc
Q 021657          218 VGKKVEQGPRTTNYPAGLFFQHAGHRDKVVDFHWNASDPWTVVSVSDDCDSTGGGGTLQIWRMS  281 (309)
Q Consensus       218 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~s~d~~s~~~dg~v~vw~~~  281 (309)
                      .....           .....+..|...|.+++|+|++..++        +|+.|+.|++|+..
T Consensus       248 ~~~~~-----------~~~~~~~~~~~~v~~v~~sp~g~~la--------s~~~D~~v~lw~~~  292 (316)
T 3bg1_A          248 ASSNT-----------WSPKLLHKFNDVVWHVSWSITANILA--------VSGGDNKVTLWKES  292 (316)
T ss_dssp             TTCCC-----------CBCCEEEECSSCEEEEEECTTTCCEE--------EEESSSCEEEEEEC
T ss_pred             ccccc-----------hhhhhhhcCCCcEEEEEEcCCCCEEE--------EEcCCCeEEEEEEC
Confidence            21100           01122356888999999999887655        44445999999986

>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}

Probab=100.00  E-value=1.8e-36  Score=250.26  Aligned_cols=259  Identities=14%  Similarity=0.211  Sum_probs=206.5

Q ss_pred             CCCCcceEEEEECCCCCEEEEecCCCcEEEEeCCccccc-cc--cCCccccccCCCCceeecCCCCCCCCcccCCCCCcC
Q 021657            6 GHQDNAEFALAMCPTEPYVLSGGKDKSVVLWSIQDHITS-SA--TDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVG   82 (309)
Q Consensus         6 ~H~~~~V~~~~~~~~~~~l~t~~~dg~i~vwd~~~~~~~-~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   82 (309)
                      +|.+ .|++++|+|++++|++|+.||.|++||....... ..  ..............  .+..+..++.+.+|+..+.+
T Consensus       106 ~~~~-~v~~~~~s~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~v~~~~~~~~~~--~l~~~~~d~~i~iwd~~~~~  182 (425)
T 1r5m_A          106 KTTN-QVTCLAWSHDGNSIVTGVENGELRLWNKTGALLNVLNFHRAPIVSVKWNKDGT--HIISMDVENVTILWNVISGT  182 (425)
T ss_dssp             --CB-CEEEEEECTTSSEEEEEETTSCEEEEETTSCEEEEECCCCSCEEEEEECTTSS--EEEEEETTCCEEEEETTTTE
T ss_pred             CCCC-ceEEEEEcCCCCEEEEEeCCCeEEEEeCCCCeeeeccCCCccEEEEEECCCCC--EEEEEecCCeEEEEECCCCc
Confidence            3676 8999999999999999999999999994433111 11  11111112222221  12233457889999999988


Q ss_pred             cccccccccCC---------------eEEEEEecCCCcEEEEEcCCCeEEEEEcCCCCcceEEEeeccCCceeEEEeccC
Q 021657           83 PRGIYNGHEDT---------------VEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPL  147 (309)
Q Consensus        83 ~~~~~~~~~~~---------------v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~  147 (309)
                      .+..+..+...               +.++.|+|++  .+++++.||.|++||+.+++  ....+..|...|.+++|+| 
T Consensus       183 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~g~i~~~d~~~~~--~~~~~~~~~~~i~~~~~~~-  257 (425)
T 1r5m_A          183 VMQHFELKETGGSSINAENHSGDGSLGVDVEWVDDD--KFVIPGPKGAIFVYQITEKT--PTGKLIGHHGPISVLEFND-  257 (425)
T ss_dssp             EEEEECCC---------------CCCBSCCEEEETT--EEEEECGGGCEEEEETTCSS--CSEEECCCSSCEEEEEEET-
T ss_pred             EEEEeeccccCccceeeccccCCcceeeEEEEcCCC--EEEEEcCCCeEEEEEcCCCc--eeeeeccCCCceEEEEECC-
Confidence            88888877776               9999999975  58899999999999999877  5667778999999999999 


Q ss_pred             CCCeEEEEcCCCcEEEEecCCCCCCCCCCceeeeccCCCCeeEEEEecCCCcEEEEecCCCcEEEEeCCcccccccCCCC
Q 021657          148 DDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPR  227 (309)
Q Consensus       148 ~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~dg~i~iwd~~~~~~~~~~~~~  227 (309)
                      ++++|++++.|+.|++||+++      ++.+..+..|...|.+++|+|++  ++++++.|+.|++||++.          
T Consensus       258 ~~~~l~~~~~d~~i~i~d~~~------~~~~~~~~~~~~~i~~~~~~~~~--~l~~~~~d~~i~i~d~~~----------  319 (425)
T 1r5m_A          258 TNKLLLSASDDGTLRIWHGGN------GNSQNCFYGHSQSIVSASWVGDD--KVISCSMDGSVRLWSLKQ----------  319 (425)
T ss_dssp             TTTEEEEEETTSCEEEECSSS------BSCSEEECCCSSCEEEEEEETTT--EEEEEETTSEEEEEETTT----------
T ss_pred             CCCEEEEEcCCCEEEEEECCC------CccceEecCCCccEEEEEECCCC--EEEEEeCCCcEEEEECCC----------
Confidence            999999999999999999998      78888898899999999999999  467999999999999987          


Q ss_pred             CcCCCCceeeeecCCCcceeeEEEccCCCeEEEEecCCCCCCCCCCeEEEEEccccccCChhh-----------------
Q 021657          228 TTNYPAGLFFQHAGHRDKVVDFHWNASDPWTVVSVSDDCDSTGGGGTLQIWRMSDLIYRPQDE-----------------  290 (309)
Q Consensus       228 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~s~d~~s~~~dg~v~vw~~~~~~~~~~~~-----------------  290 (309)
                           ...+..+..|...|.+++|+|++..++        +++.||.|++||+.      ..+                 
T Consensus       320 -----~~~~~~~~~~~~~i~~~~~s~~~~~l~--------~~~~dg~i~i~~~~------~~~~~~~~~~~~~~~~~~~~  380 (425)
T 1r5m_A          320 -----NTLLALSIVDGVPIFAGRISQDGQKYA--------VAFMDGQVNVYDLK------KLNSKSRSLYGNRDGILNPL  380 (425)
T ss_dssp             -----TEEEEEEECTTCCEEEEEECTTSSEEE--------EEETTSCEEEEECH------HHHC--------------CE
T ss_pred             -----CcEeEecccCCccEEEEEEcCCCCEEE--------EEECCCeEEEEECC------CCccceeeeecccccccCcc
Confidence                 345667778999999999999887655        44445999999998      566                 


Q ss_pred             ---HhHhhhcccc--eEEEeeeCC
Q 021657          291 ---VLAELEKFKA--HVISCTSKP  309 (309)
Q Consensus       291 ---~~~~~~~h~~--~v~~~~~~P  309 (309)
                         ++..+.+|..  .|.+++|+|
T Consensus       381 ~~~~~~~~~~~~~~~~v~~~~~s~  404 (425)
T 1r5m_A          381 PIPLYASYQSSQDNDYIFDLSWNC  404 (425)
T ss_dssp             ECCEEEEECCTTCCCCEEEEEECT
T ss_pred             cchhhhhhcCcccCCceEEEEccC
Confidence               7788888976  999999987

>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1

Probab=100.00  E-value=1.5e-35  Score=242.40  Aligned_cols=243  Identities=19%  Similarity=0.309  Sum_probs=186.2

Q ss_pred             ceEEEEECCCCCEEEEecCCCcEEEEeCCccccccccCC----ccccccCCCCceeecCCCCCCCCcccCCCCCcCcccc
Q 021657           11 AEFALAMCPTEPYVLSGGKDKSVVLWSIQDHITSSATDP----ATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGI   86 (309)
Q Consensus        11 ~V~~~~~~~~~~~l~t~~~dg~i~vwd~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   86 (309)
                      .|++++|+|++++|++|+.||.|+|||++++........    ...........  .+..+..++.+++|+..+.+....
T Consensus       125 ~v~~v~~s~dg~~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~p~~~--~l~s~s~d~~v~iwd~~~~~~~~~  202 (393)
T 1erj_A          125 YIRSVCFSPDGKFLATGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFPSGD--KLVSGSGDRTVRIWDLRTGQCSLT  202 (393)
T ss_dssp             BEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSS--EEEEEETTSEEEEEETTTTEEEEE
T ss_pred             eEEEEEECCCCCEEEEEcCCCeEEEEECCCCcEEEEEccCCCCEEEEEEcCCCC--EEEEecCCCcEEEEECCCCeeEEE
Confidence            499999999999999999999999999987643322211    11111111111  233455688999999988877666


Q ss_pred             cccccCCeEEEEEecCCCcEEEEEcCCCeEEEEEcCCCCcceEEEe-------eccCCceeEEEeccCCCCeEEEEcCCC
Q 021657           87 YNGHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPVIKVE-------KAHDADLHCVDWNPLDDNLILTGSADN  159 (309)
Q Consensus        87 ~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~-------~~~~~~v~~~~~~~~~~~~l~~~~~dg  159 (309)
                      +. +...+.+++|+|.++.+|++|+.|+.|++||+++++  ....+       .+|...|.+++|+| ++++|++|+.|+
T Consensus       203 ~~-~~~~v~~~~~~~~~~~~l~~~s~d~~v~iwd~~~~~--~~~~~~~~~~~~~~h~~~v~~v~~~~-~g~~l~s~s~d~  278 (393)
T 1erj_A          203 LS-IEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGF--LVERLDSENESGTGHKDSVYSVVFTR-DGQSVVSGSLDR  278 (393)
T ss_dssp             EE-CSSCEEEEEECSTTCCEEEEEETTSCEEEEETTTCC--EEEEEC------CCCSSCEEEEEECT-TSSEEEEEETTS
T ss_pred             EE-cCCCcEEEEEECCCCCEEEEEcCCCcEEEEECCCCc--EEEeecccccCCCCCCCCEEEEEECC-CCCEEEEEeCCC
Confidence            54 567799999999433899999999999999998877  44433       57889999999999 999999999999


Q ss_pred             cEEEEecCCCCCC------CCCCceeeeccCCCCeeEEEEecCCCcEEEEecCCCcEEEEeCCcccccccCCCCCcCCCC
Q 021657          160 SVRMFDRRNLTSN------GVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPA  233 (309)
Q Consensus       160 ~i~i~d~~~~~~~------~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~  233 (309)
                      .|++||+++....      ..+.....+.+|...|.+++|+|++.+ +++|+.|+.|++||++.               .
T Consensus       279 ~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~-l~sgs~D~~v~iwd~~~---------------~  342 (393)
T 1erj_A          279 SVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQNDEY-ILSGSKDRGVLFWDKKS---------------G  342 (393)
T ss_dssp             EEEEEEC---------------CEEEEEECCSSCEEEEEECGGGCE-EEEEETTSEEEEEETTT---------------C
T ss_pred             EEEEEECCCCCCcccccCCCCCcceEEEecccCcEEEEEECCCCCE-EEEEeCCCeEEEEECCC---------------C
Confidence            9999999863210      013445677889999999999999996 57999999999999987               4


Q ss_pred             ceeeeecCCCcceeeEEEccC-----CCeEEEEecCCCCCCCCCCeEEEEEccc
Q 021657          234 GLFFQHAGHRDKVVDFHWNAS-----DPWTVVSVSDDCDSTGGGGTLQIWRMSD  282 (309)
Q Consensus       234 ~~~~~~~~~~~~v~~~~~~~~-----~~~~~~s~s~d~~s~~~dg~v~vw~~~~  282 (309)
                      ..+..+.+|...|.+++|++.     ...+++++|.|       |+|++|++..
T Consensus       343 ~~~~~l~~h~~~v~~v~~~~~~~~~p~~~~l~sgs~D-------g~i~iW~~~~  389 (393)
T 1erj_A          343 NPLLMLQGHRNSVISVAVANGSSLGPEYNVFATGSGD-------CKARIWKYKK  389 (393)
T ss_dssp             CEEEEEECCSSCEEEEEECSSCTTCTTCEEEEEEETT-------SEEEEEEEEE
T ss_pred             eEEEEECCCCCCEEEEEecCCcCcCCCCCEEEEECCC-------CcEEECcccc
Confidence            456778899999999999873     23466655555       9999999973

>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}

Probab=100.00  E-value=1.4e-37  Score=258.05  Aligned_cols=257  Identities=12%  Similarity=0.233  Sum_probs=181.5

Q ss_pred             ccc-CCCCCcceEEEEECC-CCCEEEEecCCCcEEEEeCCcccccc------c---cCCccccccCCCCceeecCCCCCC
Q 021657            2 EIL-TGHQDNAEFALAMCP-TEPYVLSGGKDKSVVLWSIQDHITSS------A---TDPATAKSAGSSGSIIKQSPKPGD   70 (309)
Q Consensus         2 ~~l-~~H~~~~V~~~~~~~-~~~~l~t~~~dg~i~vwd~~~~~~~~------~---~~~~~~~~~~~~~~~~~~~~~~~~   70 (309)
                      +.| ++|.+ .|++++|+| ++++|++|+.||+|+|||+.+.....      .   ............  ...+..+..+
T Consensus        56 ~~~~~~h~~-~V~~~~~s~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~--~~~l~s~s~d  132 (437)
T 3gre_A           56 ATLMENEPN-SITSSAVSPGETPYLITGSDQGVIKIWNLKEIIVGEVYSSSLTYDCSSTVTQITMIPN--FDAFAVSSKD  132 (437)
T ss_dssp             EEECTTTTS-CEEEEEEECSSSCEEEEEETTSEEEEEEHHHHHTTCCCSCSEEEECSSCEEEEEECTT--SSEEEEEETT
T ss_pred             eeeccCCCC-ceEEEEECCCCCCEEEEecCCceEEEeECcccccCcccceeeeccCCCCEEEEEEeCC--CCEEEEEeCC
Confidence            345 88888 899999999 99999999999999999997621111      1   111111111111  1123344567


Q ss_pred             CCcccCCCC---CcCccccccc------------ccCCeEEEE--EecCCCcEEEEEcCCCeEEEEEcCCCCcceEEEee
Q 021657           71 GNDKAADGP---SVGPRGIYNG------------HEDTVEDVT--FCPSSAQEFCSVGDDSCLILWDARVGTSPVIKVEK  133 (309)
Q Consensus        71 ~~~~~~~~~---~~~~~~~~~~------------~~~~v~~~~--~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~  133 (309)
                      +.+.+|+..   ..+....+..            +...+.++.  +++++ .+|++|+.||.|++||+++++  ....+.
T Consensus       133 g~i~vwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~-~~l~~~~~d~~i~iwd~~~~~--~~~~~~  209 (437)
T 3gre_A          133 GQIIVLKVNHYQQESEVKFLNCECIRKINLKNFGKNEYAVRMRAFVNEEK-SLLVALTNLSRVIIFDIRTLE--RLQIIE  209 (437)
T ss_dssp             SEEEEEEEEEEEETTEEEEEEEEEEEEEEGGGGSSCCCEEEEEEEECSSC-EEEEEEETTSEEEEEETTTCC--EEEEEE
T ss_pred             CEEEEEEeccccCCceeeccccceeEEEEccCcccccCceEEEEEEcCCC-CEEEEEeCCCeEEEEeCCCCe--eeEEEc
Confidence            889999874   3333332222            445666666  44666 899999999999999999888  666776


Q ss_pred             c--cCCceeEEEeccCCCCeEEEEcCCCcEEEEecCCCCCCCCCCceeeec-cCCCCeeEEEEec----CCCcEEEEecC
Q 021657          134 A--HDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFE-GHSAAVLCVQWSP----DKSSVFGSSAE  206 (309)
Q Consensus       134 ~--~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~-~~~~~v~~~~~~~----~~~~l~~~~~~  206 (309)
                      .  |...|++++|+| ++.+|++|+.||.|++||+++      ++++..+. .|...|++++|+|    ++. ++++|+.
T Consensus       210 ~~~h~~~v~~~~~s~-~~~~l~s~~~dg~i~iwd~~~------~~~~~~~~~~~~~~v~~~~~~~~~s~~~~-~l~s~~~  281 (437)
T 3gre_A          210 NSPRHGAVSSICIDE-ECCVLILGTTRGIIDIWDIRF------NVLIRSWSFGDHAPITHVEVCQFYGKNSV-IVVGGSS  281 (437)
T ss_dssp             CCGGGCCEEEEEECT-TSCEEEEEETTSCEEEEETTT------TEEEEEEBCTTCEEEEEEEECTTTCTTEE-EEEEEST
T ss_pred             cCCCCCceEEEEECC-CCCEEEEEcCCCeEEEEEcCC------ccEEEEEecCCCCceEEEEeccccCCCcc-EEEEEcC
Confidence            6  889999999999 899999999999999999998      88888875 6778999997765    465 5779999


Q ss_pred             CCcEEEEeCCcccccccCCCCCcCCCCcee----------eeecC--CCcceeeEEEccCCCeEEEEecCCCCCCCCCCe
Q 021657          207 DGLLNIWDYEKVGKKVEQGPRTTNYPAGLF----------FQHAG--HRDKVVDFHWNASDPWTVVSVSDDCDSTGGGGT  274 (309)
Q Consensus       207 dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~----------~~~~~--~~~~v~~~~~~~~~~~~~~s~s~d~~s~~~dg~  274 (309)
                      ||.|++||++......... ..........          ..+.+  |...|++++|+ ++ .++++++.|       +.
T Consensus       282 dg~i~iwd~~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~~l~~~-~~-~~l~s~~~d-------~~  351 (437)
T 3gre_A          282 KTFLTIWNFVKGHCQYAFI-NSDEQPSMEHFLPIEKGLEELNFCGIRSLNALSTISVS-ND-KILLTDEAT-------SS  351 (437)
T ss_dssp             TEEEEEEETTTTEEEEEEE-SSSSCCCGGGGSCBCSSGGGCCCCCCCSGGGGCCEEEE-TT-EEEEEEGGG-------TE
T ss_pred             CCcEEEEEcCCCcEEEEEE-cCCCCCccceecccccccccceecccccCCceEEEEEC-Cc-eEEEecCCC-------Ce
Confidence            9999999998733221111 0000000000          11233  88899999999 45 456655555       99


Q ss_pred             EEEEEccc
Q 021657          275 LQIWRMSD  282 (309)
Q Consensus       275 v~vw~~~~  282 (309)
                      |++||+..
T Consensus       352 i~~wd~~~  359 (437)
T 3gre_A          352 IVMFSLNE  359 (437)
T ss_dssp             EEEEETTC
T ss_pred             EEEEECCC
Confidence            99999983

>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}

Probab=100.00  E-value=2.5e-36  Score=265.73  Aligned_cols=244  Identities=22%  Similarity=0.349  Sum_probs=193.8

Q ss_pred             CcccCCCCCcceEEEEECCCCCEEEEecCCCcEEEEeCCccccccccCCccccccCCCCceeecCCCCCCCCcccCCCCC
Q 021657            1 MEILTGHQDNAEFALAMCPTEPYVLSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPS   80 (309)
Q Consensus         1 l~~l~~H~~~~V~~~~~~~~~~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (309)
                      +++++||.+ +|++++|+|++++|++|+.||.|+|||+.+.                                      +
T Consensus         2 ~~~l~gH~~-~V~~l~~s~dg~~latg~~dg~I~vwd~~~~--------------------------------------~   42 (753)
T 3jro_A            2 VVIANAHNE-LIHDAVLDYYGKRLATCSSDKTIKIFEVEGE--------------------------------------T   42 (753)
T ss_dssp             ------CCC-CEEEECCCSSSCCEEEEETTTEEEEEEEETT--------------------------------------E
T ss_pred             eeecccCcc-eeEEEEECCCCCeEEEEECCCcEEEEecCCC--------------------------------------C
Confidence            357899999 8999999999999999999999999998632                                      2


Q ss_pred             cCcccccccccCCeEEEEEecC--CCcEEEEEcCCCeEEEEEcCCCCcceEEEeeccCCceeEEEeccCC--CCeEEEEc
Q 021657           81 VGPRGIYNGHEDTVEDVTFCPS--SAQEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLD--DNLILTGS  156 (309)
Q Consensus        81 ~~~~~~~~~~~~~v~~~~~~~~--~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~--~~~l~~~~  156 (309)
                      ......+.+|.+.|++++|+|+  + .+|++|+.||.|++||+.+++......+..|...|.+++|+| +  +..+++|+
T Consensus        43 ~~~~~~l~~h~~~V~~l~~s~~~~~-~~l~s~s~Dg~I~vwd~~~~~~~~~~~~~~h~~~V~~v~~sp-~~~~~~l~sgs  120 (753)
T 3jro_A           43 HKLIDTLTGHEGPVWRVDWAHPKFG-TILASCSYDGKVLIWKEENGRWSQIAVHAVHSASVNSVQWAP-HEYGPLLLVAS  120 (753)
T ss_dssp             EEEEEEECCCSSCEEEEEECCTTSC-SEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECC-GGGCSEEEEEE
T ss_pred             CccceeccCCcCceEEEEecCCCCC-CEEEEEeCCCeEEEEECCCCcccccccccCCCCCeEEEEECC-CCCCCEEEEEe
Confidence            3345667889999999999987  6 889999999999999999876446677788999999999999 7  89999999


Q ss_pred             CCCcEEEEecCCCCCCCCCCceeeeccCCCCeeEEEEec-------------CCCcEEEEecCCCcEEEEeCCccccccc
Q 021657          157 ADNSVRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWSP-------------DKSSVFGSSAEDGLLNIWDYEKVGKKVE  223 (309)
Q Consensus       157 ~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-------------~~~~l~~~~~~dg~i~iwd~~~~~~~~~  223 (309)
                      .||.|++||+++..    ......+..|...|.+++|+|             ++.. +++|+.||.|++||++.....  
T Consensus       121 ~dg~I~vwdl~~~~----~~~~~~~~~~~~~v~~l~~~p~~~~~~~~~~~~~d~~~-l~sgs~dg~I~iwd~~~~~~~--  193 (753)
T 3jro_A          121 SDGKVSVVEFKENG----TTSPIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRK-FVTGGADNLVKIWKYNSDAQT--  193 (753)
T ss_dssp             TTSEEEEEECCSSS----CCCCEEEECCSSCEEEEEECCCC---------CGGGCC-EEEEETTSCEEEEEEETTTTE--
T ss_pred             CCCcEEEEEeecCC----CcceeEeecCCCceEEEEecCcccccccccccCCCCCE-EEEEECCCeEEEEeccCCccc--
Confidence            99999999999832    234556678899999999999             4675 679999999999999873221  


Q ss_pred             CCCCCcCCCCceeeeecCCCcceeeEEEccCC--CeEEEEecCCCCCCCCCCeEEEEEccccccCChhhHhHhhhcccce
Q 021657          224 QGPRTTNYPAGLFFQHAGHRDKVVDFHWNASD--PWTVVSVSDDCDSTGGGGTLQIWRMSDLIYRPQDEVLAELEKFKAH  301 (309)
Q Consensus       224 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~--~~~~~s~s~d~~s~~~dg~v~vw~~~~~~~~~~~~~~~~~~~h~~~  301 (309)
                               ......+.+|...|++++|+|++  ..++++++.|       |.|++||+...... ....+.....|.+.
T Consensus       194 ---------~~~~~~~~~h~~~V~~l~~sp~~~~~~~l~s~s~D-------g~I~iwd~~~~~~~-~~~~~~~~~~~~~~  256 (753)
T 3jro_A          194 ---------YVLESTLEGHSDWVRDVAWSPTVLLRSYLASVSQD-------RTCIIWTQDNEQGP-WKKTLLKEEKFPDV  256 (753)
T ss_dssp             ---------EEEEEEECCCSSCEEEEEECCCCSSSEEEEEEESS-------SCEEEEEESSSSSC-CBCCBSSSSCCSSC
T ss_pred             ---------ceeeeeecCCCCcEEEEEeccCCCCCCEEEEEecC-------CEEEEecCCCCCCc-ceeEEeccCCCCCc
Confidence                     23556778999999999999984  4566655555       99999999842111 01234445668899


Q ss_pred             EEEeeeCC
Q 021657          302 VISCTSKP  309 (309)
Q Consensus       302 v~~~~~~P  309 (309)
                      |++++|+|
T Consensus       257 v~~l~~sp  264 (753)
T 3jro_A          257 LWRASWSL  264 (753)
T ss_dssp             CCCEEECT
T ss_pred             eEEEEEcC
Confidence            99999987

>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A

Probab=100.00  E-value=1.5e-35  Score=239.75  Aligned_cols=205  Identities=10%  Similarity=0.105  Sum_probs=160.3

Q ss_pred             CCCcceEEEEECCCCCEEE--EecCCCcEEEEeCCccccccccCCccccccCCCCceeecCCCCCCCCcccCCCCCcCcc
Q 021657            7 HQDNAEFALAMCPTEPYVL--SGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPR   84 (309)
Q Consensus         7 H~~~~V~~~~~~~~~~~l~--t~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   84 (309)
                      +.. .+.+++|+|||++|+  +++.|++|+|||+++.                                        +.+
T Consensus       132 ~~~-~~~~v~fSpDg~~la~as~~~d~~i~iwd~~~~----------------------------------------~~~  170 (365)
T 4h5i_A          132 ADD-YTKLVYISREGTVAAIASSKVPAIMRIIDPSDL----------------------------------------TEK  170 (365)
T ss_dssp             TTC-CEEEEEECTTSSCEEEEESCSSCEEEEEETTTT----------------------------------------EEE
T ss_pred             ccc-CEEEEEEcCCCCEEEEEECCCCCEEEEeECCCC----------------------------------------cEE
Confidence            344 588999999999976  4557999999999743                                        223


Q ss_pred             cccccccCCeEEEEEecCCCcEEEEEcCCCeEEEEEcCCCCcceEEEeeccCCceeEEEeccCCCCeEEEEcCCC----c
Q 021657           85 GIYNGHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADN----S  160 (309)
Q Consensus        85 ~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg----~  160 (309)
                      ..+ .|...|.+++|+|+| .++++++.+ .+++|+..+++.........|...|.+++|+| ++.++++++.|+    .
T Consensus       171 ~~~-~~~~~V~~v~fspdg-~~l~s~s~~-~~~~~~~~~~~~~~~~~~~~~~~~v~~v~fsp-dg~~l~~~s~d~~~~~~  246 (365)
T 4h5i_A          171 FEI-ETRGEVKDLHFSTDG-KVVAYITGS-SLEVISTVTGSCIARKTDFDKNWSLSKINFIA-DDTVLIAASLKKGKGIV  246 (365)
T ss_dssp             EEE-ECSSCCCEEEECTTS-SEEEEECSS-CEEEEETTTCCEEEEECCCCTTEEEEEEEEEE-TTEEEEEEEESSSCCEE
T ss_pred             EEe-CCCCceEEEEEccCC-ceEEeccce-eEEEEEeccCcceeeeecCCCCCCEEEEEEcC-CCCEEEEEecCCcceeE
Confidence            333 377889999999999 888888755 56777777776434445567888999999999 999999998887    6


Q ss_pred             EEEEecCCCCCCCCCCceeeeccCCCCeeEEEEecCCCcEEEEecCCCcEEEEeCCcccccccCCCCCcCCCCceeee-e
Q 021657          161 VRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQ-H  239 (309)
Q Consensus       161 i~i~d~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~-~  239 (309)
                      +++||+......  ......+.+|...|++++|+|+|++ ||+|+.|+.|+|||+++               .+++.. +
T Consensus       247 i~~~~~~~~~~~--~~~~~~~~~~~~~V~~~~~Spdg~~-lasgs~D~~V~iwd~~~---------------~~~~~~~~  308 (365)
T 4h5i_A          247 LTKISIKSGNTS--VLRSKQVTNRFKGITSMDVDMKGEL-AVLASNDNSIALVKLKD---------------LSMSKIFK  308 (365)
T ss_dssp             EEEEEEETTEEE--EEEEEEEESSCSCEEEEEECTTSCE-EEEEETTSCEEEEETTT---------------TEEEEEET
T ss_pred             Eeecccccceec--ceeeeeecCCCCCeEeEEECCCCCc-eEEEcCCCEEEEEECCC---------------CcEEEEec
Confidence            888998762100  1123566788899999999999995 78999999999999987               344555 4


Q ss_pred             cCCCcceeeEEEccCCCeEEEEecCCCCCCCCCCeEEEEEccc
Q 021657          240 AGHRDKVVDFHWNASDPWTVVSVSDDCDSTGGGGTLQIWRMSD  282 (309)
Q Consensus       240 ~~~~~~v~~~~~~~~~~~~~~s~s~d~~s~~~dg~v~vw~~~~  282 (309)
                      .+|..+|++++|+|++.+ ++++|       .|++|+||++..
T Consensus       309 ~gH~~~V~~v~fSpdg~~-laS~S-------~D~tvrvw~ip~  343 (365)
T 4h5i_A          309 QAHSFAITEVTISPDSTY-VASVS-------AANTIHIIKLPL  343 (365)
T ss_dssp             TSSSSCEEEEEECTTSCE-EEEEE-------TTSEEEEEECCT
T ss_pred             CcccCCEEEEEECCCCCE-EEEEe-------CCCeEEEEEcCC
Confidence            789999999999998876 45455       459999999964

>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A

Probab=100.00  E-value=7.4e-36  Score=246.45  Aligned_cols=234  Identities=15%  Similarity=0.196  Sum_probs=181.8

Q ss_pred             cccCCCCCcceEEEEECCCCCEEEEecCCCcEEEEeCCccccccccCCccccccCCCCceeecCCCCCCCCcccCCCCCc
Q 021657            2 EILTGHQDNAEFALAMCPTEPYVLSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSV   81 (309)
Q Consensus         2 ~~l~~H~~~~V~~~~~~~~~~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (309)
                      +.+++|.+ .|++++|+|++++|++|+.||.|++||+.+                                        .
T Consensus       133 ~~~~~h~~-~v~~~~~~~~~~~l~s~s~d~~i~iwd~~~----------------------------------------~  171 (420)
T 3vl1_A          133 EIDQAHVS-EITKLKFFPSGEALISSSQDMQLKIWSVKD----------------------------------------G  171 (420)
T ss_dssp             EETTSSSS-CEEEEEECTTSSEEEEEETTSEEEEEETTT----------------------------------------C
T ss_pred             eecccccC-ccEEEEECCCCCEEEEEeCCCeEEEEeCCC----------------------------------------C
Confidence            35679998 899999999999999999999999999974                                        2


Q ss_pred             CcccccccccCCeEEEEEecCCCcEEEEEcCCCeEEEEEcCCCCcceEEEeec---c---------------------CC
Q 021657           82 GPRGIYNGHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPVIKVEKA---H---------------------DA  137 (309)
Q Consensus        82 ~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~---~---------------------~~  137 (309)
                      +.+..+.+|...|.+++|+|++ .+|++++.||.|++||+++++  ....+..   +                     ..
T Consensus       172 ~~~~~~~~h~~~v~~~~~~~~~-~~l~s~~~d~~v~iwd~~~~~--~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~  248 (420)
T 3vl1_A          172 SNPRTLIGHRATVTDIAIIDRG-RNVLSASLDGTIRLWECGTGT--TIHTFNRKENPHDGVNSIALFVGTDRQLHEISTS  248 (420)
T ss_dssp             CCCEEEECCSSCEEEEEEETTT-TEEEEEETTSCEEEEETTTTE--EEEEECBTTBTTCCEEEEEEEECCCSSCGGGCCC
T ss_pred             cCceEEcCCCCcEEEEEEcCCC-CEEEEEcCCCcEEEeECCCCc--eeEEeecCCCCCCCccEEEEecCCcceeeecccC
Confidence            3445677899999999999998 889999999999999998876  4555543   2                     34


Q ss_pred             ceeEEEeccCCCCeEEEEcCCCcEEEEecCCCCCCCCCCceeeec-cCCCCeeEEEEecCCCcEEEEecCCCcEEEEeCC
Q 021657          138 DLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFE-GHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYE  216 (309)
Q Consensus       138 ~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~l~~~~~~dg~i~iwd~~  216 (309)
                      .+.+++|+| ++++|++|+.||.|++||+++      ++.+..+. .|...|.+++|+|++..++++|+.||.|++||++
T Consensus       249 ~v~~~~~s~-~~~~l~~~~~dg~i~i~d~~~------~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~g~~dg~i~vwd~~  321 (420)
T 3vl1_A          249 KKNNLEFGT-YGKYVIAGHVSGVITVHNVFS------KEQTIQLPSKFTCSCNSLTVDGNNANYIYAGYENGMLAQWDLR  321 (420)
T ss_dssp             CCCTTCSSC-TTEEEEEEETTSCEEEEETTT------CCEEEEECCTTSSCEEEEEECSSCTTEEEEEETTSEEEEEETT
T ss_pred             cccceEEcC-CCCEEEEEcCCCeEEEEECCC------CceeEEcccccCCCceeEEEeCCCCCEEEEEeCCCeEEEEEcC
Confidence            556666788 899999999999999999998      66666664 4788999999999999557799999999999998


Q ss_pred             cccccccCCCCCcCCCCceeeeecC-CCcceeeEEEccCCCeEEEEecCCCCCCCCCCeEEEEEccccccCCh---hhHh
Q 021657          217 KVGKKVEQGPRTTNYPAGLFFQHAG-HRDKVVDFHWNASDPWTVVSVSDDCDSTGGGGTLQIWRMSDLIYRPQ---DEVL  292 (309)
Q Consensus       217 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~~s~s~d~~s~~~dg~v~vw~~~~~~~~~~---~~~~  292 (309)
                      ....              ++..+.. |...|..+.+. ++. ++++++       .|+.|++|++........   ....
T Consensus       322 ~~~~--------------~~~~~~~~~~~~v~~~~~~-~~~-~l~s~~-------~d~~v~iw~~~~~~~~~~~~~~~~~  378 (420)
T 3vl1_A          322 SPEC--------------PVGEFLINEGTPINNVYFA-AGA-LFVSSG-------FDTSIKLDIISDPESERPAIEFETP  378 (420)
T ss_dssp             CTTS--------------CSEEEEESTTSCEEEEEEE-TTE-EEEEET-------TTEEEEEEEECCTTCCSCEECTTSC
T ss_pred             CCcC--------------chhhhhccCCCCceEEEeC-CCC-EEEEec-------CCccEEEEeccCCCCCccceeccCc
Confidence            7322              2334444 66788888665 454 556554       459999999985321100   1122


Q ss_pred             HhhhcccceEEEeeeCC
Q 021657          293 AELEKFKAHVISCTSKP  309 (309)
Q Consensus       293 ~~~~~h~~~v~~~~~~P  309 (309)
                      ..+.+|.+.|.+++|+|
T Consensus       379 ~~~~~~~~~v~~~~~s~  395 (420)
T 3vl1_A          379 TFLVSNDDAVSQFCYVS  395 (420)
T ss_dssp             EEECCSSCCCCEEEEEC
T ss_pred             cEEccCCcceEEEEEcc
Confidence            23557888899999887

>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B

Probab=100.00  E-value=2.2e-35  Score=244.19  Aligned_cols=233  Identities=35%  Similarity=0.719  Sum_probs=187.3

Q ss_pred             cccCCCCCcceEEEEECCCCC-EEEEecCCCcEEEEeCCccccccccCCccccccCCCCceeecCCCCCCCCcccCCCCC
Q 021657            2 EILTGHQDNAEFALAMCPTEP-YVLSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPS   80 (309)
Q Consensus         2 ~~l~~H~~~~V~~~~~~~~~~-~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (309)
                      ..+.+|.+ .|++++|+|++. +|++|+.||.|++||+........                                 .
T Consensus       175 ~~~~~h~~-~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~---------------------------------~  220 (430)
T 2xyi_A          175 LRLRGHQK-EGYGLSWNPNLNGYLLSASDDHTICLWDINATPKEHR---------------------------------V  220 (430)
T ss_dssp             EEEECCSS-CCCCEEECTTSTTEEEEECTTSCEEEEETTSCCBGGG---------------------------------E
T ss_pred             EEecCCCC-CeEEEEeCCCCCCeEEEEeCCCeEEEEeCCCCCCCCc---------------------------------e
Confidence            45778998 899999999988 999999999999999985311000                                 0


Q ss_pred             cCcccccccccCCeEEEEEecCCCcEEEEEcCCCeEEEEEcCCCC-cceEEEeeccCCceeEEEeccCCCC-eEEEEcCC
Q 021657           81 VGPRGIYNGHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGT-SPVIKVEKAHDADLHCVDWNPLDDN-LILTGSAD  158 (309)
Q Consensus        81 ~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~-~~~~~~~~~~~~~v~~~~~~~~~~~-~l~~~~~d  158 (309)
                      ......+.+|...|.+++|+|++..+|++++.||.|++||+++.. ......+..|...|++++|+| ++. ++++|+.|
T Consensus       221 ~~~~~~~~~h~~~v~~v~~~p~~~~~l~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~i~~~p-~~~~~l~tg~~d  299 (430)
T 2xyi_A          221 IDAKNIFTGHTAVVEDVAWHLLHESLFGSVADDQKLMIWDTRNNNTSKPSHTVDAHTAEVNCLSFNP-YSEFILATGSAD  299 (430)
T ss_dssp             EECSEEECCCSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCSCSSSCSEEEECCSSCEEEEEECS-SCTTEEEEEETT
T ss_pred             eccceeecCCCCCEeeeEEeCCCCCEEEEEeCCCeEEEEECCCCCCCcceeEeecCCCCeEEEEeCC-CCCCEEEEEeCC
Confidence            112345668999999999999666899999999999999998763 124556678999999999999 665 79999999


Q ss_pred             CcEEEEecCCCCCCCCCCceeeeccCCCCeeEEEEecCCCcEEEEecCCCcEEEEeCCcccccccCCCCCcCCCCceeee
Q 021657          159 NSVRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQ  238 (309)
Q Consensus       159 g~i~i~d~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~  238 (309)
                      |.|++||+++.     ..++..+..|...|.+++|+|+++++|++++.|+.|++||++..+..... ......+..++..
T Consensus       300 g~v~vwd~~~~-----~~~~~~~~~h~~~v~~i~~sp~~~~~l~s~~~d~~i~iwd~~~~~~~~~~-~~~~~~~~~~~~~  373 (430)
T 2xyi_A          300 KTVALWDLRNL-----KLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQST-EDAEDGPPELLFI  373 (430)
T ss_dssp             SEEEEEETTCT-----TSCSEEEECCSSCEEEEEECSSCTTEEEEEETTSCCEEEEGGGTTCCCCH-HHHHHCCTTEEEE
T ss_pred             CeEEEEeCCCC-----CCCeEEeecCCCCEEEEEECCCCCCEEEEEeCCCcEEEEeCCCCccccCc-cccccCCcceEEE
Confidence            99999999974     45788888899999999999999888899999999999999874322110 0001123457788


Q ss_pred             ecCCCcceeeEEEccCCCeEEEEecCCCCCCCCCCeEEEEEccc
Q 021657          239 HAGHRDKVVDFHWNASDPWTVVSVSDDCDSTGGGGTLQIWRMSD  282 (309)
Q Consensus       239 ~~~~~~~v~~~~~~~~~~~~~~s~s~d~~s~~~dg~v~vw~~~~  282 (309)
                      +.+|...|++++|+|++++++++++.|       |.|++|++..
T Consensus       374 ~~~h~~~v~~~~~~p~~~~~l~s~s~d-------g~i~iw~~~~  410 (430)
T 2xyi_A          374 HGGHTAKISDFSWNPNEPWIICSVSED-------NIMQVWQMAE  410 (430)
T ss_dssp             CCCCSSCEEEEEECSSSTTEEEEEETT-------SEEEEEEECH
T ss_pred             cCCCCCCceEEEECCCCCCEEEEEECC-------CCEEEeEccc
Confidence            889999999999999999778876666       9999999984

>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a

Probab=100.00  E-value=2.8e-35  Score=236.23  Aligned_cols=251  Identities=19%  Similarity=0.275  Sum_probs=188.6

Q ss_pred             cccCCCCCcceEEEEECCCCCEEEEecCCCcEEEEeCCccccccccCCcc----ccccCCCCceeecCCCCCCCCcccCC
Q 021657            2 EILTGHQDNAEFALAMCPTEPYVLSGGKDKSVVLWSIQDHITSSATDPAT----AKSAGSSGSIIKQSPKPGDGNDKAAD   77 (309)
Q Consensus         2 ~~l~~H~~~~V~~~~~~~~~~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~   77 (309)
                      +.|++|.. .|++++|+|++++|++|+.|+.|++|+..............    ........  ..+..+..++.+.+|+
T Consensus        80 ~~l~~h~~-~V~~~~~s~dg~~l~s~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~l~s~s~d~~~~~~d  156 (340)
T 4aow_A           80 RALRGHSH-FVSDVVISSDGQFALSGSWDGTLRLWDLTTGTTTRRFVGHTKDVLSVAFSSDN--RQIVSGSRDKTIKLWN  156 (340)
T ss_dssp             EEECCCSS-CEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEECTTS--SCEEEEETTSCEEEEC
T ss_pred             EEEeCCCC-CEEEEEECCCCCEEEEEcccccceEEeecccceeeeecCCCCceeEEEEeecC--ccceeecCCCeEEEEE
Confidence            46889999 89999999999999999999999999998763322221111    11111111  1122345577888888


Q ss_pred             CCCcCc-ccccccccCCeEEEEEecCCC-cEEEEEcCCCeEEEEEcCCCCcceEEEeeccCCceeEEEeccCCCCeEEEE
Q 021657           78 GPSVGP-RGIYNGHEDTVEDVTFCPSSA-QEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTG  155 (309)
Q Consensus        78 ~~~~~~-~~~~~~~~~~v~~~~~~~~~~-~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~  155 (309)
                      ...... .....+|...+..++|++++. .++++++.|+.|++||+++++  ....+.+|...|++++|+| ++++|++|
T Consensus       157 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~s~~~d~~i~i~d~~~~~--~~~~~~~h~~~v~~~~~s~-~~~~l~s~  233 (340)
T 4aow_A          157 TLGVCKYTVQDESHSEWVSCVRFSPNSSNPIIVSCGWDKLVKVWNLANCK--LKTNHIGHTGYLNTVTVSP-DGSLCASG  233 (340)
T ss_dssp             TTSCEEEEECSSSCSSCEEEEEECSCSSSCEEEEEETTSCEEEEETTTTE--EEEEECCCSSCEEEEEECT-TSSEEEEE
T ss_pred             eCCCceEEEEeccccCcccceEEccCCCCcEEEEEcCCCEEEEEECCCCc--eeeEecCCCCcEEEEEECC-CCCEEEEE
Confidence            765443 445678999999999988753 467899999999999998877  6778889999999999999 99999999


Q ss_pred             cCCCcEEEEecCCCCCCCCCCceeeeccCCCCeeEEEEecCCCcEEEEecCCCcEEEEeCCcccccccCCCCCcCCCCce
Q 021657          156 SADNSVRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGL  235 (309)
Q Consensus       156 ~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~  235 (309)
                      +.||.|++||+++      .+++..+.. ...+.+++|+|++. ++ +++.|+.|++||++........      .....
T Consensus       234 s~Dg~i~iwd~~~------~~~~~~~~~-~~~v~~~~~~~~~~-~~-~~~~d~~i~iwd~~~~~~~~~~------~~~~~  298 (340)
T 4aow_A          234 GKDGQAMLWDLNE------GKHLYTLDG-GDIINALCFSPNRY-WL-CAATGPSIKIWDLEGKIIVDEL------KQEVI  298 (340)
T ss_dssp             ETTCEEEEEETTT------TEEEEEEEC-SSCEEEEEECSSSS-EE-EEEETTEEEEEETTTTEEEEEE------CCC--
T ss_pred             eCCCeEEEEEecc------CceeeeecC-CceEEeeecCCCCc-ee-eccCCCEEEEEECCCCeEEEec------cccce
Confidence            9999999999998      788888875 46899999999886 44 6667999999999863221110      00112


Q ss_pred             eeeecCCCcceeeEEEccCCCeEEEEecCCCCCCCCCCeEEEEEcc
Q 021657          236 FFQHAGHRDKVVDFHWNASDPWTVVSVSDDCDSTGGGGTLQIWRMS  281 (309)
Q Consensus       236 ~~~~~~~~~~v~~~~~~~~~~~~~~s~s~d~~s~~~dg~v~vw~~~  281 (309)
                      .....+|...|++++|+|++.+|+        +|+.||.|+|||++
T Consensus       299 ~~~~~~h~~~v~~l~~s~dg~~l~--------sgs~Dg~v~iW~~~  336 (340)
T 4aow_A          299 STSSKAEPPQCTSLAWSADGQTLF--------AGYTDNLVRVWQVT  336 (340)
T ss_dssp             -----CCCCCEEEEEECTTSSEEE--------EEETTSCEEEEEEE
T ss_pred             eeeccCCCCCEEEEEECCCCCEEE--------EEeCCCEEEEEeCC
Confidence            234567899999999999888655        45555999999998

>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}

Probab=100.00  E-value=4.8e-36  Score=247.66  Aligned_cols=257  Identities=18%  Similarity=0.290  Sum_probs=203.0

Q ss_pred             CCCcceEEEEECCCCC-EEEEecCCCcEEEEeC----Ccccc------ccccC--------------CccccccCCCCce
Q 021657            7 HQDNAEFALAMCPTEP-YVLSGGKDKSVVLWSI----QDHIT------SSATD--------------PATAKSAGSSGSI   61 (309)
Q Consensus         7 H~~~~V~~~~~~~~~~-~l~t~~~dg~i~vwd~----~~~~~------~~~~~--------------~~~~~~~~~~~~~   61 (309)
                      |.+ .|++++|+|+++ +|++|+.||.|++||+    .++..      .....              ............ 
T Consensus        44 ~~~-~v~~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~-  121 (425)
T 1r5m_A           44 KLD-NIVSSTWNPLDESILAYGEKNSVARLARIVETDQEGKKYWKLTIIAELRHPFALSASSGKTTNQVTCLAWSHDGN-  121 (425)
T ss_dssp             ECS-CCSEEEECSSCTTEEEEEETBTEEEEEEEEEC------CEEEEEEEEEECCCCCC------CBCEEEEEECTTSS-
T ss_pred             ccC-ceEEEEECCCCCcEEEEecCCceEEEEEEecccCCccccccccccccccccccccccccCCCCceEEEEEcCCCC-
Confidence            446 899999999999 9999999999999999    66541      11110              111111111111 


Q ss_pred             eecCCCCCCCCcccCCCCCcCcccccccccCCeEEEEEecCCCcEEEEEcCCCeEEEEEcCCCCcceEEEeeccCCc---
Q 021657           62 IKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPVIKVEKAHDAD---  138 (309)
Q Consensus        62 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~---  138 (309)
                       .+..+..++.+.+|+ .+.+.+..+..|...|.+++|+|++ .+|++++.||.|++||+.+++  ....+..+...   
T Consensus       122 -~l~~~~~dg~i~i~~-~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~d~~i~iwd~~~~~--~~~~~~~~~~~~~~  196 (425)
T 1r5m_A          122 -SIVTGVENGELRLWN-KTGALLNVLNFHRAPIVSVKWNKDG-THIISMDVENVTILWNVISGT--VMQHFELKETGGSS  196 (425)
T ss_dssp             -EEEEEETTSCEEEEE-TTSCEEEEECCCCSCEEEEEECTTS-SEEEEEETTCCEEEEETTTTE--EEEEECCC------
T ss_pred             -EEEEEeCCCeEEEEe-CCCCeeeeccCCCccEEEEEECCCC-CEEEEEecCCeEEEEECCCCc--EEEEeeccccCccc
Confidence             222334577899998 6677788889999999999999998 789999999999999998877  56666666666   


Q ss_pred             ------------eeEEEeccCCCCeEEEEcCCCcEEEEecCCCCCCCCCCceeeeccCCCCeeEEEEecCCCcEEEEecC
Q 021657          139 ------------LHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAE  206 (309)
Q Consensus       139 ------------v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~  206 (309)
                                  +.+++|+| + ..+++++.+|.|++||+++      .+.+..+..|...|.+++|+|++++ +++++.
T Consensus       197 ~~~~~~~~~~~~~~~~~~~~-~-~~~~~~~~~g~i~~~d~~~------~~~~~~~~~~~~~i~~~~~~~~~~~-l~~~~~  267 (425)
T 1r5m_A          197 INAENHSGDGSLGVDVEWVD-D-DKFVIPGPKGAIFVYQITE------KTPTGKLIGHHGPISVLEFNDTNKL-LLSASD  267 (425)
T ss_dssp             ---------CCCBSCCEEEE-T-TEEEEECGGGCEEEEETTC------SSCSEEECCCSSCEEEEEEETTTTE-EEEEET
T ss_pred             eeeccccCCcceeeEEEEcC-C-CEEEEEcCCCeEEEEEcCC------CceeeeeccCCCceEEEEECCCCCE-EEEEcC
Confidence                        99999998 5 5688999999999999998      7888889899999999999999995 679999


Q ss_pred             CCcEEEEeCCcccccccCCCCCcCCCCceeeeecCCCcceeeEEEccCCCeEEEEecCCCCCCCCCCeEEEEEccccccC
Q 021657          207 DGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKVVDFHWNASDPWTVVSVSDDCDSTGGGGTLQIWRMSDLIYR  286 (309)
Q Consensus       207 dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~s~d~~s~~~dg~v~vw~~~~~~~~  286 (309)
                      |+.|++||++.               ......+.+|...|.+++|+|++  ++++++.|       +.|++||+.     
T Consensus       268 d~~i~i~d~~~---------------~~~~~~~~~~~~~i~~~~~~~~~--~l~~~~~d-------~~i~i~d~~-----  318 (425)
T 1r5m_A          268 DGTLRIWHGGN---------------GNSQNCFYGHSQSIVSASWVGDD--KVISCSMD-------GSVRLWSLK-----  318 (425)
T ss_dssp             TSCEEEECSSS---------------BSCSEEECCCSSCEEEEEEETTT--EEEEEETT-------SEEEEEETT-----
T ss_pred             CCEEEEEECCC---------------CccceEecCCCccEEEEEECCCC--EEEEEeCC-------CcEEEEECC-----
Confidence            99999999987               33455667899999999999987  55555544       999999998     


Q ss_pred             ChhhHhHhhhcccceEEEeeeCC
Q 021657          287 PQDEVLAELEKFKAHVISCTSKP  309 (309)
Q Consensus       287 ~~~~~~~~~~~h~~~v~~~~~~P  309 (309)
                       .++++..+..|...|.+++|+|
T Consensus       319 -~~~~~~~~~~~~~~i~~~~~s~  340 (425)
T 1r5m_A          319 -QNTLLALSIVDGVPIFAGRISQ  340 (425)
T ss_dssp             -TTEEEEEEECTTCCEEEEEECT
T ss_pred             -CCcEeEecccCCccEEEEEEcC
Confidence             6778888889999999999987

>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C

Probab=100.00  E-value=2.6e-35  Score=239.27  Aligned_cols=215  Identities=14%  Similarity=0.194  Sum_probs=175.9

Q ss_pred             cccCCCCCcceEEEEECCCCCEEEEecCCCcEEEEeCCccccccccCCccccccCCCCceeecCCCCCCCCcccCCCCCc
Q 021657            2 EILTGHQDNAEFALAMCPTEPYVLSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSV   81 (309)
Q Consensus         2 ~~l~~H~~~~V~~~~~~~~~~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (309)
                      +.+.+|.+ .|++++|+|++++|++++.||.|++||++++..                                      
T Consensus        46 ~~~~~h~~-~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~--------------------------------------   86 (372)
T 1k8k_C           46 HELKEHNG-QVTGVDWAPDSNRIVTCGTDRNAYVWTLKGRTW--------------------------------------   86 (372)
T ss_dssp             EEEECCSS-CEEEEEEETTTTEEEEEETTSCEEEEEEETTEE--------------------------------------
T ss_pred             eeecCCCC-cccEEEEeCCCCEEEEEcCCCeEEEEECCCCee--------------------------------------
Confidence            46788998 899999999999999999999999999974311                                      


Q ss_pred             CcccccccccCCeEEEEEecCCCcEEEEEcCCCeEEEEEcCCCCcc--eEEEeeccCCceeEEEeccCCCCeEEEEcCCC
Q 021657           82 GPRGIYNGHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSP--VIKVEKAHDADLHCVDWNPLDDNLILTGSADN  159 (309)
Q Consensus        82 ~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~--~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg  159 (309)
                      .....+..|...|.+++|+|++ .+|++++.|+.|++||++.....  .......|...|.+++|+| ++++|++++.||
T Consensus        87 ~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~~l~~~~~dg  164 (372)
T 1k8k_C           87 KPTLVILRINRAARCVRWAPNE-KKFAVGSGSRVISICYFEQENDWWVCKHIKKPIRSTVLSLDWHP-NSVLLAAGSCDF  164 (372)
T ss_dssp             EEEEECCCCSSCEEEEEECTTS-SEEEEEETTSSEEEEEEETTTTEEEEEEECTTCCSCEEEEEECT-TSSEEEEEETTS
T ss_pred             eeeEEeecCCCceeEEEECCCC-CEEEEEeCCCEEEEEEecCCCcceeeeeeecccCCCeeEEEEcC-CCCEEEEEcCCC
Confidence            1122345688999999999998 88999999999999999877631  2233356889999999999 999999999999


Q ss_pred             cEEEEecCCCCC------------CCCCCceeeeccCCCCeeEEEEecCCCcEEEEecCCCcEEEEeCCcccccccCCCC
Q 021657          160 SVRMFDRRNLTS------------NGVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPR  227 (309)
Q Consensus       160 ~i~i~d~~~~~~------------~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~dg~i~iwd~~~~~~~~~~~~~  227 (309)
                      .|++||++....            ...++.+..+..|...|.+++|+|++.+ +++++.|+.|++||++.          
T Consensus       165 ~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~-l~~~~~d~~i~i~d~~~----------  233 (372)
T 1k8k_C          165 KCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSANGSR-VAWVSHDSTVCLADADK----------  233 (372)
T ss_dssp             CEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCSSCEEEEEECSSSSE-EEEEETTTEEEEEEGGG----------
T ss_pred             CEEEEEcccccccccccccccccccchhhheEecCCCCCeEEEEEECCCCCE-EEEEeCCCEEEEEECCC----------
Confidence            999999752110            0016778888889999999999999995 67999999999999987          


Q ss_pred             CcCCCCceeeeecCCCcceeeEEEccCCCeEEEEecCCCCCCCCCCeEEEEEccc
Q 021657          228 TTNYPAGLFFQHAGHRDKVVDFHWNASDPWTVVSVSDDCDSTGGGGTLQIWRMSD  282 (309)
Q Consensus       228 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~s~d~~s~~~dg~v~vw~~~~  282 (309)
                           ...+..+..|..+|.+++|+|++. +++++        .|+.|++|++..
T Consensus       234 -----~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~--------~d~~i~i~~~~~  274 (372)
T 1k8k_C          234 -----KMAVATLASETLPLLAVTFITESS-LVAAG--------HDCFPVLFTYDS  274 (372)
T ss_dssp             -----TTEEEEEECSSCCEEEEEEEETTE-EEEEE--------TTSSCEEEEEET
T ss_pred             -----CceeEEEccCCCCeEEEEEecCCC-EEEEE--------eCCeEEEEEccC
Confidence                 445667788999999999999776 44433        349999999985

>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A

Probab=100.00  E-value=2.8e-36  Score=242.24  Aligned_cols=266  Identities=14%  Similarity=0.176  Sum_probs=198.4

Q ss_pred             cccCCCCCcceEEEEECCCCCEEEEecCCCcEEEEeCCccc----ccccc---CCccccccCCCCceeecCCCCCCCCcc
Q 021657            2 EILTGHQDNAEFALAMCPTEPYVLSGGKDKSVVLWSIQDHI----TSSAT---DPATAKSAGSSGSIIKQSPKPGDGNDK   74 (309)
Q Consensus         2 ~~l~~H~~~~V~~~~~~~~~~~l~t~~~dg~i~vwd~~~~~----~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~   74 (309)
                      +...+|.+ .|++++|+|++++|++++.||.|+|||+.+..    .....   ............. ..+..+..++.+.
T Consensus         5 ~~~~~h~~-~v~~~~~s~~~~~l~~~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~~l~~~~~dg~i~   82 (342)
T 1yfq_A            5 QIEQAPKD-YISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFIDNTD-LQIYVGTVQGEIL   82 (342)
T ss_dssp             ECSSCCSS-CEEEEEEEGGGTEEEEEETTSEEEEEEEETTTTEEEEEEEEECSSCEEEEEEEESSS-EEEEEEETTSCEE
T ss_pred             ecccCCCC-cEEEEEEcCCCCEEEEEcCCCeEEEEEeCCCCccccceeeeecCCceEEEEECCCCC-cEEEEEcCCCeEE
Confidence            34578998 89999999999999999999999999998654    11111   1111111111111 0233345678999


Q ss_pred             cCCC-CCcCccccccc--ccCCeEEEEEecCCCcEEEEEcCCCeEEEEEcCC---------CCcceEEEeeccCCceeEE
Q 021657           75 AADG-PSVGPRGIYNG--HEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARV---------GTSPVIKVEKAHDADLHCV  142 (309)
Q Consensus        75 ~~~~-~~~~~~~~~~~--~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~---------~~~~~~~~~~~~~~~v~~~  142 (309)
                      +|+. ...+. ..+.+  |...|.+++|+| + .+|++++.|+.|++||+++         .+  ....+. |...|.++
T Consensus        83 ~wd~~~~~~~-~~~~~~~~~~~v~~l~~~~-~-~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~--~~~~~~-~~~~v~~~  156 (342)
T 1yfq_A           83 KVDLIGSPSF-QALTNNEANLGICRICKYG-D-DKLIAASWDGLIEVIDPRNYGDGVIAVKNL--NSNNTK-VKNKIFTM  156 (342)
T ss_dssp             EECSSSSSSE-EECBSCCCCSCEEEEEEET-T-TEEEEEETTSEEEEECHHHHTTBCEEEEES--CSSSSS-SCCCEEEE
T ss_pred             EEEeccCCce-EeccccCCCCceEEEEeCC-C-CEEEEEcCCCeEEEEcccccccccccccCC--eeeEEe-eCCceEEE
Confidence            9998 66644 67788  999999999999 6 8899999999999999986         44  233333 88899999


Q ss_pred             EeccCCCCeEEEEcCCCcEEEEecCC-CCCCCCCCceeeeccCCCCeeEEEEec-CCCcEEEEecCCCcEEEEeCCcccc
Q 021657          143 DWNPLDDNLILTGSADNSVRMFDRRN-LTSNGVGSPINKFEGHSAAVLCVQWSP-DKSSVFGSSAEDGLLNIWDYEKVGK  220 (309)
Q Consensus       143 ~~~~~~~~~l~~~~~dg~i~i~d~~~-~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~~dg~i~iwd~~~~~~  220 (309)
                      +|+| ++  +++++.|+.|++||+++ ..    .........+...+.+++|+| ++.. +++++.||.|++|+++..+.
T Consensus       157 ~~~~-~~--l~~~~~d~~i~i~d~~~~~~----~~~~~~~~~~~~~i~~i~~~~~~~~~-l~~~~~dg~i~i~~~~~~~~  228 (342)
T 1yfq_A          157 DTNS-SR--LIVGMNNSQVQWFRLPLCED----DNGTIEESGLKYQIRDVALLPKEQEG-YACSSIDGRVAVEFFDDQGD  228 (342)
T ss_dssp             EECS-SE--EEEEESTTEEEEEESSCCTT----CCCEEEECSCSSCEEEEEECSGGGCE-EEEEETTSEEEEEECCTTCC
T ss_pred             EecC-Cc--EEEEeCCCeEEEEECCcccc----ccceeeecCCCCceeEEEECCCCCCE-EEEEecCCcEEEEEEcCCCc
Confidence            9998 55  99999999999999987 32    223334456788999999999 9985 67999999999999987310


Q ss_pred             cccCCCCCcCCCCceeeeecCCC---------cceeeEEEccCCCeEEEEecCCCCCCCCCCeEEEEEccccccCChhhH
Q 021657          221 KVEQGPRTTNYPAGLFFQHAGHR---------DKVVDFHWNASDPWTVVSVSDDCDSTGGGGTLQIWRMSDLIYRPQDEV  291 (309)
Q Consensus       221 ~~~~~~~~~~~~~~~~~~~~~~~---------~~v~~~~~~~~~~~~~~s~s~d~~s~~~dg~v~vw~~~~~~~~~~~~~  291 (309)
                      ..         .......+..|.         ..|.+++|+|++.+++        +|+.||.|++||+.      ++++
T Consensus       229 ~~---------~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~--------~~~~dg~i~vwd~~------~~~~  285 (342)
T 1yfq_A          229 DY---------NSSKRFAFRCHRLNLKDTNLAYPVNSIEFSPRHKFLY--------TAGSDGIISCWNLQ------TRKK  285 (342)
T ss_dssp             ST---------TCTTCEEEECCCCCTTCCSSCCCEEEEEECTTTCCEE--------EEETTSCEEEEETT------TTEE
T ss_pred             cc---------ccccceeeecccccccccccceeEEEEEEcCCCCEEE--------EecCCceEEEEcCc------cHhH
Confidence            00         012334455554         4999999999888655        44455999999999      6778


Q ss_pred             hHhhhcc-cceEEEee
Q 021657          292 LAELEKF-KAHVISCT  306 (309)
Q Consensus       292 ~~~~~~h-~~~v~~~~  306 (309)
                      +.++.+| .++|.+++
T Consensus       286 ~~~~~~~h~~~v~~~~  301 (342)
T 1yfq_A          286 IKNFAKFNEDSVVKIA  301 (342)
T ss_dssp             EEECCCCSSSEEEEEE
T ss_pred             hhhhhcccCCCceEec
Confidence            8889998 99999886

>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}

Probab=100.00  E-value=9.7e-36  Score=247.66  Aligned_cols=241  Identities=14%  Similarity=0.176  Sum_probs=173.5

Q ss_pred             CCCcceEEEEECCCCCEEEEecCCCcEEEEeCCcccc-----------cccc--C--------------CccccccCCCC
Q 021657            7 HQDNAEFALAMCPTEPYVLSGGKDKSVVLWSIQDHIT-----------SSAT--D--------------PATAKSAGSSG   59 (309)
Q Consensus         7 H~~~~V~~~~~~~~~~~l~t~~~dg~i~vwd~~~~~~-----------~~~~--~--------------~~~~~~~~~~~   59 (309)
                      |.+ .|++++|+|+|++|++|+.||.|+|||+.+...           ....  .              ...........
T Consensus        27 ~~~-~V~~v~~s~~g~~la~g~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~V~~l~~~~~~  105 (447)
T 3dw8_B           27 EAD-IISTVEFNHSGELLATGDKGGRVVIFQQEQENKIQSHSRGEYNVYSTFQSHEPEFDYLKSLEIEEKINKIRWLPQK  105 (447)
T ss_dssp             GGG-SEEEEEECSSSSEEEEEETTSEEEEEEECC-----CCCCCCEEEEEEEECCCCEEEGGGTEEECCCCCEEEECCCC
T ss_pred             ccC-cEEEEEECCCCCEEEEEcCCCeEEEEEecCCCCCCcccccceeEecccccccccccccccccccCceEEEEEcCCC
Confidence            455 899999999999999999999999999986541           1111  0              01111111111


Q ss_pred             ceeecCCCCCCCCcccCCCCCcCcc----------------------------------------cccccccCCeEEEEE
Q 021657           60 SIIKQSPKPGDGNDKAADGPSVGPR----------------------------------------GIYNGHEDTVEDVTF   99 (309)
Q Consensus        60 ~~~~~~~~~~~~~~~~~~~~~~~~~----------------------------------------~~~~~~~~~v~~~~~   99 (309)
                      ....+..+..++.+++|+.......                                        ....+|...|.+++|
T Consensus       106 ~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~  185 (447)
T 3dw8_B          106 NAAQFLLSTNDKTIKLWKISERDKRPEGYNLKEEDGRYRDPTTVTTLRVPVFRPMDLMVEASPRRIFANAHTYHINSISI  185 (447)
T ss_dssp             SSSEEEEEECSSCEEEEEEEEEEEEEECCSCC--------CCCCCSCCCCEEEEEEEEEEEEEEEEECSCCSSCCCEEEE
T ss_pred             CcceEEEeCCCCeEEEEecccccCCcceecccCccccccCcccccceEeccccchheeeeccceEEeccCCCcceEEEEE
Confidence            1012223356788888887653321                                        113679999999999


Q ss_pred             ecCCCcEEEEEcCCCeEEEEEcCCCCcceEE-------EeeccCCceeEEEeccCCC-CeEEEEcCCCcEEEEecCCCCC
Q 021657          100 CPSSAQEFCSVGDDSCLILWDARVGTSPVIK-------VEKAHDADLHCVDWNPLDD-NLILTGSADNSVRMFDRRNLTS  171 (309)
Q Consensus       100 ~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~-------~~~~~~~~v~~~~~~~~~~-~~l~~~~~dg~i~i~d~~~~~~  171 (309)
                      +|++ .+|++| .|+.|++||++.... ...       .+..|...|.+++|+| ++ ++|++|+.||.|++||+++   
T Consensus       186 ~~~~-~~l~s~-~d~~i~iwd~~~~~~-~~~~~~~~~~~~~~~~~~v~~~~~~p-~~~~~l~s~~~dg~i~iwd~~~---  258 (447)
T 3dw8_B          186 NSDY-ETYLSA-DDLRINLWHLEITDR-SFNIVDIKPANMEELTEVITAAEFHP-NSCNTFVYSSSKGTIRLCDMRA---  258 (447)
T ss_dssp             CTTS-SEEEEE-CSSEEEEEETTEEEE-EEEEEECCCSSGGGCCCCEEEEEECS-SCTTEEEEEETTSCEEEEETTT---
T ss_pred             cCCC-CEEEEe-CCCeEEEEECCCCCc-eeeeeecccccccccCcceEEEEECC-CCCcEEEEEeCCCeEEEEECcC---
Confidence            9998 788888 799999999984432 222       2568999999999999 77 9999999999999999998   


Q ss_pred             CCCCCc----eeeeccCCC------------CeeEEEEecCCCcEEEEecCCCcEEEEeCCcccccccCCCCCcCCCCce
Q 021657          172 NGVGSP----INKFEGHSA------------AVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGL  235 (309)
Q Consensus       172 ~~~~~~----~~~~~~~~~------------~v~~~~~~~~~~~l~~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~  235 (309)
                         ++.    +..+..|..            .|.+++|+|++++ +++++. +.|++||++..++              +
T Consensus       259 ---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~-l~~~~~-~~v~iwd~~~~~~--------------~  319 (447)
T 3dw8_B          259 ---SALCDRHSKLFEEPEDPSNRSFFSEIISSISDVKFSHSGRY-MMTRDY-LSVKVWDLNMENR--------------P  319 (447)
T ss_dssp             ---CSSSCTTCEEECCC-----CCHHHHHTTCEEEEEECTTSSE-EEEEES-SEEEEEETTCCSS--------------C
T ss_pred             ---CccccceeeEeccCCCccccccccccCceEEEEEECCCCCE-EEEeeC-CeEEEEeCCCCcc--------------c
Confidence               554    677877765            8999999999996 568887 9999999986333              2


Q ss_pred             eeeecCCCcc---------------eeeEEEccCCCeEEEEecCCCCCCCCCCeEEEEEccc
Q 021657          236 FFQHAGHRDK---------------VVDFHWNASDPWTVVSVSDDCDSTGGGGTLQIWRMSD  282 (309)
Q Consensus       236 ~~~~~~~~~~---------------v~~~~~~~~~~~~~~s~s~d~~s~~~dg~v~vw~~~~  282 (309)
                      +..+.+|...               +..++|+|++.++ +       +|+.||.|++||+..
T Consensus       320 ~~~~~~~~~~~~~l~~~~~~~~i~~~~~~~~s~~~~~l-~-------s~s~dg~v~iwd~~~  373 (447)
T 3dw8_B          320 VETYQVHEYLRSKLCSLYENDCIFDKFECCWNGSDSVV-M-------TGSYNNFFRMFDRNT  373 (447)
T ss_dssp             SCCEESCGGGTTTHHHHHHTSGGGCCCCEEECTTSSEE-E-------EECSTTEEEEEETTT
T ss_pred             cceeeccccccccccccccccccccceEEEECCCCCEE-E-------EeccCCEEEEEEcCC
Confidence            3344455421               3349999998876 4       555559999999984

>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}

Probab=100.00  E-value=6.4e-35  Score=235.61  Aligned_cols=259  Identities=15%  Similarity=0.244  Sum_probs=194.9

Q ss_pred             CCCCcceEEEEECCC---CCEEEEecCCCcEEEEeCCccc-cccccCC--cccccc------CCCCceeecCCCCCCCCc
Q 021657            6 GHQDNAEFALAMCPT---EPYVLSGGKDKSVVLWSIQDHI-TSSATDP--ATAKSA------GSSGSIIKQSPKPGDGND   73 (309)
Q Consensus         6 ~H~~~~V~~~~~~~~---~~~l~t~~~dg~i~vwd~~~~~-~~~~~~~--~~~~~~------~~~~~~~~~~~~~~~~~~   73 (309)
                      +|.. .|++++|+|+   +.+|++|+.||.|++||+.+.. .......  ......      ........+..+..++.+
T Consensus        63 ~~~~-~v~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~s~~~~~l~~~~~d~~i  141 (357)
T 3i2n_A           63 EKAK-PIKCGTFGATSLQQRYLATGDFGGNLHIWNLEAPEMPVYSVKGHKEIINAIDGIGGLGIGEGAPEIVTGSRDGTV  141 (357)
T ss_dssp             EESS-CEEEEECTTCCTTTCCEEEEETTSCEEEECTTSCSSCSEEECCCSSCEEEEEEESGGGCC-CCCEEEEEETTSCE
T ss_pred             cccC-cEEEEEEcCCCCCCceEEEecCCCeEEEEeCCCCCccEEEEEecccceEEEeeccccccCCCccEEEEEeCCCeE
Confidence            6777 8999999998   6999999999999999998764 2221111  111000      001111123345568899


Q ss_pred             ccCCCCCcC-cccccccccC----CeEEEE----EecCCCcEEEEEcCCCeEEEEEcCCCCcceEEEeeccCCceeEEEe
Q 021657           74 KAADGPSVG-PRGIYNGHED----TVEDVT----FCPSSAQEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDW  144 (309)
Q Consensus        74 ~~~~~~~~~-~~~~~~~~~~----~v~~~~----~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~  144 (309)
                      .+|+..+.+ ++..+..|.+    .|.++.    |+|++ .+|++++.||.|++||+++++  . .....|...|.+++|
T Consensus       142 ~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~-~~l~~~~~d~~i~i~d~~~~~--~-~~~~~~~~~v~~~~~  217 (357)
T 3i2n_A          142 KVWDPRQKDDPVANMEPVQGENKRDCWTVAFGNAYNQEE-RVVCAGYDNGDIKLFDLRNMA--L-RWETNIKNGVCSLEF  217 (357)
T ss_dssp             EEECTTSCSSCSEEECCCTTSCCCCEEEEEEECCCC-CC-CEEEEEETTSEEEEEETTTTE--E-EEEEECSSCEEEEEE
T ss_pred             EEEeCCCCCCcceeccccCCCCCCceEEEEEEeccCCCC-CEEEEEccCCeEEEEECccCc--e-eeecCCCCceEEEEc
Confidence            999998876 6777766554    899998    67777 889999999999999998877  3 444678899999999


Q ss_pred             ccC--CCCeEEEEcCCCcEEEEecCCCCCCCCCCceeeec-----cCCCCeeEEEEecCCCcEEEEecCCCcEEEEeCCc
Q 021657          145 NPL--DDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFE-----GHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEK  217 (309)
Q Consensus       145 ~~~--~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~-----~~~~~v~~~~~~~~~~~l~~~~~~dg~i~iwd~~~  217 (309)
                      +|.  ++.++++++.||.|++||+++      .+.+..+.     .|...|++++|+|+++.++++++.||.|++||++.
T Consensus       218 ~~~~~~~~~l~~~~~dg~i~i~d~~~------~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~  291 (357)
T 3i2n_A          218 DRKDISMNKLVATSLEGKFHVFDMRT------QHPTKGFASVSEKAHKSTVWQVRHLPQNRELFLTAGGAGGLHLWKYEY  291 (357)
T ss_dssp             SCSSSSCCEEEEEESTTEEEEEEEEE------EETTTEEEEEEEECCSSCEEEEEEETTEEEEEEEEETTSEEEEEEEEC
T ss_pred             CCCCCCCCEEEEECCCCeEEEEeCcC------CCcccceeeeccCCCcCCEEEEEECCCCCcEEEEEeCCCcEEEeecCC
Confidence            985  578999999999999999998      55555444     89999999999999986678999999999999987


Q ss_pred             ccccccCCCCC----cCCCCceeeeecCCCcceeeEEEccCCCeEEEEecCCCCCCCCCCeEEEEEccc
Q 021657          218 VGKKVEQGPRT----TNYPAGLFFQHAGHRDKVVDFHWNASDPWTVVSVSDDCDSTGGGGTLQIWRMSD  282 (309)
Q Consensus       218 ~~~~~~~~~~~----~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~s~d~~s~~~dg~v~vw~~~~  282 (309)
                      ...........    .......+..+.+|...|.+++|+|++.+++++++.|       |.|++||+..
T Consensus       292 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~s~~~d-------~~i~iw~~~~  353 (357)
T 3i2n_A          292 PIQRSKKDSEGIEMGVAGSVSLLQNVTLSTQPISSLDWSPDKRGLCVCSSFD-------QTVRVLIVTK  353 (357)
T ss_dssp             CSCC--CCTTSCCCCCCCEEEEEEEEECCSSCEEEEEECSSSTTEEEEEETT-------SEEEEEEECC
T ss_pred             CcccccccCCCCccccccccceeeccccCCCCeeEEEEcCCCCeEEEEecCC-------CcEEEEECCC
Confidence            44332111100    0011246778889999999999999999887777766       9999999983

>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X

Probab=100.00  E-value=1.1e-35  Score=243.56  Aligned_cols=245  Identities=11%  Similarity=0.099  Sum_probs=194.1

Q ss_pred             cccCCCCCcceEEEEECCC----C---CEEEEecCCCcEEEEeCCcccc-----ccccCCc---------cccccCCC--
Q 021657            2 EILTGHQDNAEFALAMCPT----E---PYVLSGGKDKSVVLWSIQDHIT-----SSATDPA---------TAKSAGSS--   58 (309)
Q Consensus         2 ~~l~~H~~~~V~~~~~~~~----~---~~l~t~~~dg~i~vwd~~~~~~-----~~~~~~~---------~~~~~~~~--   58 (309)
                      ..+.+|.. .|++++|+|+    +   ++|++++.||.|++||+.+...     .......         ........  
T Consensus        56 ~~~~~h~~-~v~~~~~~~~~~~~g~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~  134 (397)
T 1sq9_A           56 YSHFVHKS-GLHHVDVLQAIERDAFELCLVATTSFSGDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWALKWGASND  134 (397)
T ss_dssp             EEEECCTT-CEEEEEEEEEEETTTEEEEEEEEEETTSCEEEEEEEECTTTCCEEEEEECCSCTTGGGSCEEEEEEECCC-
T ss_pred             eEEecCCC-cEEEEEEecccccCCccccEEEEEcCCCCEEEEEccCCcccccccceeecccccccCCCcEEEEEEeeccC
Confidence            45678998 8999999999    9   9999999999999999987653     2222111         11111100  


Q ss_pred             Cceee-cCCCCCCCCcccCCCCC------cCccc-----cc-------ccccCCeEEEEEecCCCcEEEEEcCCCeEEEE
Q 021657           59 GSIIK-QSPKPGDGNDKAADGPS------VGPRG-----IY-------NGHEDTVEDVTFCPSSAQEFCSVGDDSCLILW  119 (309)
Q Consensus        59 ~~~~~-~~~~~~~~~~~~~~~~~------~~~~~-----~~-------~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iw  119 (309)
                      ..... +..+..++.+.+|+...      .+.+.     .+       ..|...|.+++|+|++  +|++++.||.|++|
T Consensus       135 ~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~--~l~~~~~dg~i~i~  212 (397)
T 1sq9_A          135 RLLSHRLVATDVKGTTYIWKFHPFADESNSLTLNWSPTLELQGTVESPMTPSQFATSVDISERG--LIATGFNNGTVQIS  212 (397)
T ss_dssp             ---CEEEEEEETTSCEEEEEEESSSSHHHHTTTCCCCEEEEEEEECCSSSSCCCCCEEEECTTS--EEEEECTTSEEEEE
T ss_pred             CCCceEEEEEeCCCcEEEEeCCccccccccceeeccCcceeeeeeccccCCCCCceEEEECCCc--eEEEEeCCCcEEEE
Confidence            11112 33345678899999888      66666     66       4488999999999987  89999999999999


Q ss_pred             EcCCCCcceEEEeec---c---CCceeEEEeccCCCCeEEEEcCC---CcEEEEecCCCCCCCCCCceeeecc-------
Q 021657          120 DARVGTSPVIKVEKA---H---DADLHCVDWNPLDDNLILTGSAD---NSVRMFDRRNLTSNGVGSPINKFEG-------  183 (309)
Q Consensus       120 d~~~~~~~~~~~~~~---~---~~~v~~~~~~~~~~~~l~~~~~d---g~i~i~d~~~~~~~~~~~~~~~~~~-------  183 (309)
                      |+++++  ....+..   |   ...|.+++|+| ++.+|++++.|   |.|++||+++      ++.+..+..       
T Consensus       213 d~~~~~--~~~~~~~~~~h~~~~~~i~~i~~~~-~~~~l~~~~~d~~~g~i~i~d~~~------~~~~~~~~~~~~~~~~  283 (397)
T 1sq9_A          213 ELSTLR--PLYNFESQHSMINNSNSIRSVKFSP-QGSLLAIAHDSNSFGCITLYETEF------GERIGSLSVPTHSSQA  283 (397)
T ss_dssp             ETTTTE--EEEEEECCC---CCCCCEEEEEECS-STTEEEEEEEETTEEEEEEEETTT------CCEEEEECBC------
T ss_pred             ECCCCc--eeEEEeccccccccCCccceEEECC-CCCEEEEEecCCCCceEEEEECCC------CcccceeccCcccccc
Confidence            998876  6777777   8   99999999999 99999999999   9999999998      888899988       


Q ss_pred             ------CCCCeeEEEEecCCCcEEEEecCCCcEEEEeCCcccccccCCCCCcCCCCceeeeec------CC---------
Q 021657          184 ------HSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHA------GH---------  242 (309)
Q Consensus       184 ------~~~~v~~~~~~~~~~~l~~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~------~~---------  242 (309)
                            |...|.+++|+|++++ |++++.||.|++||++.               ...+..+.      +|         
T Consensus       284 ~~~~~~~~~~v~~~~~~~~~~~-l~~~~~dg~i~iwd~~~---------------~~~~~~~~~~~~~~~~~~~~~~g~~  347 (397)
T 1sq9_A          284 SLGEFAHSSWVMSLSFNDSGET-LCSAGWDGKLRFWDVKT---------------KERITTLNMHCDDIEIEEDILAVDE  347 (397)
T ss_dssp             --CCBSBSSCEEEEEECSSSSE-EEEEETTSEEEEEETTT---------------TEEEEEEECCGGGCSSGGGCCCBCT
T ss_pred             cccccccCCcEEEEEECCCCCE-EEEEeCCCeEEEEEcCC---------------CceeEEEecccCcccchhhhhcccc
Confidence                  9999999999999996 67999999999999987               23344444      55         


Q ss_pred             ------CcceeeEEEccCCC---------eEEEEecCCCCCCCCCCeEEEEEcc
Q 021657          243 ------RDKVVDFHWNASDP---------WTVVSVSDDCDSTGGGGTLQIWRMS  281 (309)
Q Consensus       243 ------~~~v~~~~~~~~~~---------~~~~s~s~d~~s~~~dg~v~vw~~~  281 (309)
                            ...|.+++|+|++.         .++++++.|       |.|++|++.
T Consensus       348 ~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~l~s~~~d-------g~i~iw~~~  394 (397)
T 1sq9_A          348 HGDSLAEPGVFDVKFLKKGWRSGMGADLNESLCCVCLD-------RSIRWFREA  394 (397)
T ss_dssp             TSCBCSSCCEEEEEEECTTTSBSTTCTTSCEEEEEETT-------TEEEEEEEE
T ss_pred             ccccccCCceeEEEeccccccccccccccceEEEecCC-------CcEEEEEcC
Confidence                  89999999999873         456655544       999999997

>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}

Probab=100.00  E-value=1.3e-34  Score=253.41  Aligned_cols=204  Identities=22%  Similarity=0.439  Sum_probs=169.7

Q ss_pred             cccCCCCCcceEEEEECCCCCEEEEecCCCcEEEEeCCccccccccCCccccccCCCCceeecCCCCCCCCcccCCCCCc
Q 021657            2 EILTGHQDNAEFALAMCPTEPYVLSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSV   81 (309)
Q Consensus         2 ~~l~~H~~~~V~~~~~~~~~~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (309)
                      +.+.+|.. .|++++|+|++++|++|+.||+|+|||+.++                                        
T Consensus       424 ~~~~~h~~-~v~~v~~s~~g~~l~sgs~Dg~v~vwd~~~~----------------------------------------  462 (694)
T 3dm0_A          424 RRLTGHSH-FVEDVVLSSDGQFALSGSWDGELRLWDLAAG----------------------------------------  462 (694)
T ss_dssp             EEEECCSS-CEEEEEECTTSSEEEEEETTSEEEEEETTTT----------------------------------------
T ss_pred             ceecCCCC-cEEEEEECCCCCEEEEEeCCCcEEEEECCCC----------------------------------------
Confidence            35789999 8999999999999999999999999999742                                        


Q ss_pred             CcccccccccCCeEEEEEecCCCcEEEEEcCCCeEEEEEcCCCCcceEEE---eeccCCceeEEEeccCCC--CeEEEEc
Q 021657           82 GPRGIYNGHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPVIKV---EKAHDADLHCVDWNPLDD--NLILTGS  156 (309)
Q Consensus        82 ~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~---~~~~~~~v~~~~~~~~~~--~~l~~~~  156 (309)
                      .....+.+|...|.+++|+|++ .+|++|+.|++|++||.....  ....   ..+|...|.+++|+| ++  ..+++++
T Consensus       463 ~~~~~~~~h~~~v~~~~~s~~~-~~l~s~s~D~~i~iwd~~~~~--~~~~~~~~~~h~~~v~~~~~~~-~~~~~~l~s~s  538 (694)
T 3dm0_A          463 VSTRRFVGHTKDVLSVAFSLDN-RQIVSASRDRTIKLWNTLGEC--KYTISEGGEGHRDWVSCVRFSP-NTLQPTIVSAS  538 (694)
T ss_dssp             EEEEEEECCSSCEEEEEECTTS-SCEEEEETTSCEEEECTTSCE--EEEECSSTTSCSSCEEEEEECS-CSSSCEEEEEE
T ss_pred             cceeEEeCCCCCEEEEEEeCCC-CEEEEEeCCCEEEEEECCCCc--ceeeccCCCCCCCcEEEEEEeC-CCCcceEEEEe
Confidence            3345677899999999999998 789999999999999986443  2222   246888999999999 65  5899999


Q ss_pred             CCCcEEEEecCCCCCCCCCCceeeeccCCCCeeEEEEecCCCcEEEEecCCCcEEEEeCCcccccccCCCCCcCCCCcee
Q 021657          157 ADNSVRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLF  236 (309)
Q Consensus       157 ~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~  236 (309)
                      .|+.|++||+++      .+....+.+|...|++++|+|++++ +++|+.||.|++||++.               ...+
T Consensus       539 ~d~~v~vwd~~~------~~~~~~~~~h~~~v~~v~~spdg~~-l~sg~~Dg~i~iwd~~~---------------~~~~  596 (694)
T 3dm0_A          539 WDKTVKVWNLSN------CKLRSTLAGHTGYVSTVAVSPDGSL-CASGGKDGVVLLWDLAE---------------GKKL  596 (694)
T ss_dssp             TTSCEEEEETTT------CCEEEEECCCSSCEEEEEECTTSSE-EEEEETTSBCEEEETTT---------------TEEE
T ss_pred             CCCeEEEEECCC------CcEEEEEcCCCCCEEEEEEeCCCCE-EEEEeCCCeEEEEECCC---------------CceE
Confidence            999999999998      8888999999999999999999995 67999999999999987               2233


Q ss_pred             eeecCCCcceeeEEEccCCCeEEEEecCCCCCCCCCCeEEEEEccc
Q 021657          237 FQHAGHRDKVVDFHWNASDPWTVVSVSDDCDSTGGGGTLQIWRMSD  282 (309)
Q Consensus       237 ~~~~~~~~~v~~~~~~~~~~~~~~s~s~d~~s~~~dg~v~vw~~~~  282 (309)
                      ..+. +...|.+++|+|++.. ++++++        +.|++||+..
T Consensus       597 ~~~~-~~~~v~~~~~sp~~~~-l~~~~~--------~~i~iwd~~~  632 (694)
T 3dm0_A          597 YSLE-ANSVIHALCFSPNRYW-LCAATE--------HGIKIWDLES  632 (694)
T ss_dssp             ECCB-CSSCEEEEEECSSSSE-EEEEET--------TEEEEEETTT
T ss_pred             EEec-CCCcEEEEEEcCCCcE-EEEEcC--------CCEEEEECCC
Confidence            3333 3467999999997764 433332        5799999983

>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}

Probab=100.00  E-value=4.7e-36  Score=251.76  Aligned_cols=188  Identities=12%  Similarity=0.088  Sum_probs=149.9

Q ss_pred             ccccccCCeEEEEEecCC-----CcEEEEEcCCCeEEEEEcCCCCcc---------eEEEeeccCCceeEEEeccCCCCe
Q 021657           86 IYNGHEDTVEDVTFCPSS-----AQEFCSVGDDSCLILWDARVGTSP---------VIKVEKAHDADLHCVDWNPLDDNL  151 (309)
Q Consensus        86 ~~~~~~~~v~~~~~~~~~-----~~~l~s~~~dg~i~iwd~~~~~~~---------~~~~~~~~~~~v~~~~~~~~~~~~  151 (309)
                      .+..|.+.|.+++|+|++     ..+||+++.||+|++||+..+...         ....+.+|...|++++|+| + ..
T Consensus       202 ~l~~~~~~V~~v~wsp~~~~~~~~~~LAs~s~DgtvrlWd~~~~~~~~~~~~~~~~p~~~l~~h~~~v~sv~~s~-~-~~  279 (524)
T 2j04_B          202 TIVHSFGEVWDLKWHEGCHAPHLVGCLSFVSQEGTINFLEIIDNATDVHVFKMCEKPSLTLSLADSLITTFDFLS-P-TT  279 (524)
T ss_dssp             EEEECCCSEEEEEECSSCCCSSSSCEEEEEETTSCEEEEECCCCSSSSSEEECCCSCSEEECCTTTCEEEEEESS-S-SE
T ss_pred             EEEecCCcEEEEEECCCCCCCCCCceEEEEecCCeEEEEEcCCCccccccceeecCceEEEEcCCCCEEEEEecC-C-Ce
Confidence            356678899999999961     268999999999999999766421         1235678999999999998 4 58


Q ss_pred             EEEEcCCCcEEEEecCCCCCCCCCCceeeeccCCCCeeEE--EEecCCCcEEEEecCCCcEEEEeCCcccccccCCCCCc
Q 021657          152 ILTGSADNSVRMFDRRNLTSNGVGSPINKFEGHSAAVLCV--QWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTT  229 (309)
Q Consensus       152 l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~v~~~--~~~~~~~~l~~~~~~dg~i~iwd~~~~~~~~~~~~~~~  229 (309)
                      |++|+.||+|++||+++.     ..+...+.+|...|++|  +|+|++..+||+|+.|++|+|||++..           
T Consensus       280 lasgs~DgtV~lWD~~~~-----~~~~~~~~~H~~~V~sv~~~~s~~g~~~laS~S~D~tvklWD~~~~-----------  343 (524)
T 2j04_B          280 VVCGFKNGFVAEFDLTDP-----EVPSFYDQVHDSYILSVSTAYSDFEDTVVSTVAVDGYFYIFNPKDI-----------  343 (524)
T ss_dssp             EEEEETTSEEEEEETTBC-----SSCSEEEECSSSCEEEEEEECCTTSCCEEEEEETTSEEEEECGGGH-----------
T ss_pred             EEEEeCCCEEEEEECCCC-----CCceEEeecccccEEEEEEEcCCCCCeEEEEeccCCeEEEEECCCC-----------
Confidence            999999999999999972     24556788999999999  567887346889999999999999872           


Q ss_pred             CCCCceeeeecCCCc--ceeeEEEccCCCeEEEEecCCCCCCCCCCeEEEEEccccccCChhhHhHhhhcccceEEEeee
Q 021657          230 NYPAGLFFQHAGHRD--KVVDFHWNASDPWTVVSVSDDCDSTGGGGTLQIWRMSDLIYRPQDEVLAELEKFKAHVISCTS  307 (309)
Q Consensus       230 ~~~~~~~~~~~~~~~--~v~~~~~~~~~~~~~~s~s~d~~s~~~dg~v~vw~~~~~~~~~~~~~~~~~~~h~~~v~~~~~  307 (309)
                          .....+.+|..  .|.+++|+|++..++ +++       .|++|++||++      .+.++.++.+|.+.|++++|
T Consensus       344 ----~~~~~~~~~~~~~~v~~v~fsp~~~~l~-s~~-------~d~tv~lwd~~------~~~~~~~l~gH~~~V~sva~  405 (524)
T 2j04_B          344 ----ATTKTTVSRFRGSNLVPVVYCPQIYSYI-YSD-------GASSLRAVPSR------AAFAVHPLVSRETTITAIGV  405 (524)
T ss_dssp             ----HHHCEEEEECSCCSCCCEEEETTTTEEE-EEC-------SSSEEEEEETT------CTTCCEEEEECSSCEEEEEC
T ss_pred             ----CcccccccccccCcccceEeCCCcCeEE-EeC-------CCCcEEEEECc------ccccceeeecCCCceEEEEe
Confidence                22233445543  588999999887644 444       44899999998      56677788899999999999


Q ss_pred             CC
Q 021657          308 KP  309 (309)
Q Consensus       308 ~P  309 (309)
                      +|
T Consensus       406 Sp  407 (524)
T 2j04_B          406 SR  407 (524)
T ss_dssp             CS
T ss_pred             CC
Confidence            98

>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}

Probab=100.00  E-value=2.9e-35  Score=241.42  Aligned_cols=264  Identities=19%  Similarity=0.276  Sum_probs=204.5

Q ss_pred             CCCCCc-ceEEEEECCCCCEEEEecCCCcEEEEeCCccccccccCC-----ccccccCCCCceeecCCCCCCCCcccCCC
Q 021657            5 TGHQDN-AEFALAMCPTEPYVLSGGKDKSVVLWSIQDHITSSATDP-----ATAKSAGSSGSIIKQSPKPGDGNDKAADG   78 (309)
Q Consensus         5 ~~H~~~-~V~~~~~~~~~~~l~t~~~dg~i~vwd~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   78 (309)
                      .+|.+. .+.+++|++  ..+++++.||.|++||+.++........     ...........  .+..+..++.+.+|+.
T Consensus        88 ~~~~~~~~~~~~~~s~--~~l~~~~~d~~v~lw~~~~~~~~~~~~~~~~~~v~~v~~s~~~~--~l~~~~~dg~i~iwd~  163 (401)
T 4aez_A           88 PGIIDDYYLNLLDWSN--LNVVAVALERNVYVWNADSGSVSALAETDESTYVASVKWSHDGS--FLSVGLGNGLVDIYDV  163 (401)
T ss_dssp             TTCCCCTTCBCEEECT--TSEEEEEETTEEEEEETTTCCEEEEEECCTTCCEEEEEECTTSS--EEEEEETTSCEEEEET
T ss_pred             CCCcCCceEEEEeecC--CCEEEEECCCeEEEeeCCCCcEeEeeecCCCCCEEEEEECCCCC--EEEEECCCCeEEEEEC
Confidence            355551 234466654  5688899999999999988743322211     11112222222  2333455789999999


Q ss_pred             CCcCcccccccccCCeEEEEEecCCCcEEEEEcCCCeEEEEEcCCCCcceEEEeeccCCceeEEEeccCCCCeEEEEcCC
Q 021657           79 PSVGPRGIYNGHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSAD  158 (309)
Q Consensus        79 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d  158 (309)
                      .+.+.+..+.+|...|.+++|++   .+|++++.||.|++||++.... ....+..|...|.+++|+| ++.+|++|+.|
T Consensus       164 ~~~~~~~~~~~~~~~v~~~~~~~---~~l~~~~~dg~i~i~d~~~~~~-~~~~~~~~~~~v~~~~~~~-~~~~l~s~~~d  238 (401)
T 4aez_A          164 ESQTKLRTMAGHQARVGCLSWNR---HVLSSGSRSGAIHHHDVRIANH-QIGTLQGHSSEVCGLAWRS-DGLQLASGGND  238 (401)
T ss_dssp             TTCCEEEEECCCSSCEEEEEEET---TEEEEEETTSEEEEEETTSSSC-EEEEEECCSSCEEEEEECT-TSSEEEEEETT
T ss_pred             cCCeEEEEecCCCCceEEEEECC---CEEEEEcCCCCEEEEecccCcc-eeeEEcCCCCCeeEEEEcC-CCCEEEEEeCC
Confidence            99999999999999999999943   6899999999999999985442 5677788999999999999 99999999999


Q ss_pred             CcEEEEecCCCCCCCCCCceeeeccCCCCeeEEEEecCCCcEEEEec--CCCcEEEEeCCcccccccCCCCCcCCCCcee
Q 021657          159 NSVRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSA--EDGLLNIWDYEKVGKKVEQGPRTTNYPAGLF  236 (309)
Q Consensus       159 g~i~i~d~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~--~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~  236 (309)
                      |.|++||+++      .+++..+..|...|.+++|+|++..++++++  .|+.|++||++.               ...+
T Consensus       239 ~~v~iwd~~~------~~~~~~~~~~~~~v~~~~~~p~~~~ll~~~~gs~d~~i~i~d~~~---------------~~~~  297 (401)
T 4aez_A          239 NVVQIWDARS------SIPKFTKTNHNAAVKAVAWCPWQSNLLATGGGTMDKQIHFWNAAT---------------GARV  297 (401)
T ss_dssp             SCEEEEETTC------SSEEEEECCCSSCCCEEEECTTSTTEEEEECCTTTCEEEEEETTT---------------CCEE
T ss_pred             CeEEEccCCC------CCccEEecCCcceEEEEEECCCCCCEEEEecCCCCCEEEEEECCC---------------CCEE
Confidence            9999999998      8888899999999999999999988888865  799999999987               2333


Q ss_pred             eeecCCCcceeeEEEccCCCeEEEEecCCCCCCCCCCeEEEEEccccccCChhhHhHhhhcccceEEEeeeCC
Q 021657          237 FQHAGHRDKVVDFHWNASDPWTVVSVSDDCDSTGGGGTLQIWRMSDLIYRPQDEVLAELEKFKAHVISCTSKP  309 (309)
Q Consensus       237 ~~~~~~~~~v~~~~~~~~~~~~~~s~s~d~~s~~~dg~v~vw~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~P  309 (309)
                      ..+. +...|.+++|+|++..+++++      |+.||.|++||+...    .......+.+|.+.|.+++|+|
T Consensus       298 ~~~~-~~~~v~~~~~s~~~~~l~~~~------g~~dg~i~v~~~~~~----~~~~~~~~~~h~~~v~~~~~s~  359 (401)
T 4aez_A          298 NTVD-AGSQVTSLIWSPHSKEIMSTH------GFPDNNLSIWSYSSS----GLTKQVDIPAHDTRVLYSALSP  359 (401)
T ss_dssp             EEEE-CSSCEEEEEECSSSSEEEEEE------CTTTCEEEEEEEETT----EEEEEEEEECCSSCCCEEEECT
T ss_pred             EEEe-CCCcEEEEEECCCCCeEEEEe------ecCCCcEEEEecCCc----cceeEEEecCCCCCEEEEEECC
Confidence            3443 567899999999998877542      345699999999831    1233445678999999999987

>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}

Probab=100.00  E-value=5.8e-35  Score=237.78  Aligned_cols=203  Identities=10%  Similarity=0.085  Sum_probs=149.0

Q ss_pred             CcccCCCCCcceEEEEECCCCCEEEEecCCCcEEEEeCCccc---ccccc--CC--ccccccCCCCceeecCCCCCCCCc
Q 021657            1 MEILTGHQDNAEFALAMCPTEPYVLSGGKDKSVVLWSIQDHI---TSSAT--DP--ATAKSAGSSGSIIKQSPKPGDGND   73 (309)
Q Consensus         1 l~~l~~H~~~~V~~~~~~~~~~~l~t~~~dg~i~vwd~~~~~---~~~~~--~~--~~~~~~~~~~~~~~~~~~~~~~~~   73 (309)
                      ++.+++|.+ .|++++|+|++++|++++.||+|++||+.++.   .....  ..  ..........  ..+..+..++.+
T Consensus        48 ~~~~~~h~~-~v~~~~~s~~~~~l~s~s~d~~v~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~--~~l~~~~~d~~i  124 (377)
T 3dwl_C           48 ARTFSDHDK-IVTCVDWAPKSNRIVTCSQDRNAYVYEKRPDGTWKQTLVLLRLNRAATFVRWSPNE--DKFAVGSGARVI  124 (377)
T ss_dssp             CCCBCCCSS-CEEEEEECTTTCCEEEEETTSSEEEC------CCCCEEECCCCSSCEEEEECCTTS--SCCEEEESSSCE
T ss_pred             EEEEecCCc-eEEEEEEeCCCCEEEEEeCCCeEEEEEcCCCCceeeeeEecccCCceEEEEECCCC--CEEEEEecCCeE
Confidence            357889999 89999999999999999999999999998764   11111  11  1111111111  122334457889


Q ss_pred             ccCCCCCcC---ccccccc-ccCCeEEEEEecCCCcEEEEEcCCCeEEEEEcCCCC----------------cceEEEee
Q 021657           74 KAADGPSVG---PRGIYNG-HEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGT----------------SPVIKVEK  133 (309)
Q Consensus        74 ~~~~~~~~~---~~~~~~~-~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~----------------~~~~~~~~  133 (309)
                      .+|+....+   ....+.+ |...|++++|+|++ .+|++++.|+.|++||++...                ......+ 
T Consensus       125 ~iwd~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~-~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~-  202 (377)
T 3dwl_C          125 SVCYFEQENDWWVSKHLKRPLRSTILSLDWHPNN-VLLAAGCADRKAYVLSAYVRDVDAKPEASVWGSRLPFNTVCAEY-  202 (377)
T ss_dssp             EECCC-----CCCCEEECSSCCSCEEEEEECTTS-SEEEEEESSSCEEEEEECCSSCC-CCCSCSSCSCCCEEEEEECC-
T ss_pred             EEEEECCcccceeeeEeecccCCCeEEEEEcCCC-CEEEEEeCCCEEEEEEEEecccCCCccccccccccchhhhhhcc-
Confidence            999998876   3666777 99999999999998 889999999999999986322                1133444 


Q ss_pred             ccCCceeEEEeccCCCCeEEEEcCCCcEEEEecCCCCCCCCCCc----eeeeccCCCCeeEEEEecCCCcEEEEecCCCc
Q 021657          134 AHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSP----INKFEGHSAAVLCVQWSPDKSSVFGSSAEDGL  209 (309)
Q Consensus       134 ~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~----~~~~~~~~~~v~~~~~~~~~~~l~~~~~~dg~  209 (309)
                      .|...|.+++|+| ++++|++++.||.|++||+++      ++.    +..+..|...|.+++|+|++++ +++++.++.
T Consensus       203 ~~~~~v~~~~~sp-~~~~l~~~~~d~~i~iwd~~~------~~~~~~~~~~~~~~~~~v~~~~~s~~~~~-l~~~~~~~~  274 (377)
T 3dwl_C          203 PSGGWVHAVGFSP-SGNALAYAGHDSSVTIAYPSA------PEQPPRALITVKLSQLPLRSLLWANESAI-VAAGYNYSP  274 (377)
T ss_dssp             CCSSSEEEEEECT-TSSCEEEEETTTEEC-CEECS------TTSCEEECCCEECSSSCEEEEEEEETTEE-EEEESSSSE
T ss_pred             cCCceEEEEEECC-CCCEEEEEeCCCcEEEEECCC------CCCcceeeEeecCCCCceEEEEEcCCCCE-EEEEcCCcE
Confidence            8999999999999 999999999999999999998      665    7888899999999999999985 668876655


Q ss_pred             EEEEeCCc
Q 021657          210 LNIWDYEK  217 (309)
Q Consensus       210 i~iwd~~~  217 (309)
                      + +|+...
T Consensus       275 ~-~~~~~~  281 (377)
T 3dwl_C          275 I-LLQGNE  281 (377)
T ss_dssp             E-EECCCC
T ss_pred             E-EEEeCC
Confidence            5 777764

>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*

Probab=100.00  E-value=2.2e-34  Score=266.90  Aligned_cols=242  Identities=20%  Similarity=0.361  Sum_probs=200.2

Q ss_pred             ccCCCCCcceEEEEECCCCCEEEEecCCCcEEEEeCCccccccccCCccccccCCCCceeecCCCCCCCCcccCCCCCcC
Q 021657            3 ILTGHQDNAEFALAMCPTEPYVLSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVG   82 (309)
Q Consensus         3 ~l~~H~~~~V~~~~~~~~~~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   82 (309)
                      .+.+|.+ .|++++|+|++++|++|+.||+|++||+.+                                        .+
T Consensus       610 ~~~~h~~-~v~~~~~s~~~~~l~s~~~d~~i~vw~~~~----------------------------------------~~  648 (1249)
T 3sfz_A          610 VVRPHTD-AVYHACFSQDGQRIASCGADKTLQVFKAET----------------------------------------GE  648 (1249)
T ss_dssp             EECCCSS-CEEEEEECTTSSEEEEEETTSCEEEEETTT----------------------------------------CC
T ss_pred             EEecccc-cEEEEEECCCCCEEEEEeCCCeEEEEECCC----------------------------------------CC
Confidence            4678999 899999999999999999999999999974                                        33


Q ss_pred             cccccccccCCeEEEEEecCCCcEEEEEcCCCeEEEEEcCCCCcceEEEeeccCCceeEEEeccC-CCCeEEEEcCCCcE
Q 021657           83 PRGIYNGHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPL-DDNLILTGSADNSV  161 (309)
Q Consensus        83 ~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~-~~~~l~~~~~dg~i  161 (309)
                      .+..+.+|...|.+++|+|++ .+|++++.||.|++||+.+++  ....+.+|...|.+++|+|. +..++++|+.|+.|
T Consensus       649 ~~~~~~~h~~~v~~~~~s~~~-~~l~s~~~d~~v~vwd~~~~~--~~~~~~~~~~~v~~~~~~~~~~~~~l~sg~~d~~v  725 (1249)
T 3sfz_A          649 KLLDIKAHEDEVLCCAFSSDD-SYIATCSADKKVKIWDSATGK--LVHTYDEHSEQVNCCHFTNKSNHLLLATGSNDFFL  725 (1249)
T ss_dssp             EEEEECCCSSCEEEEEECTTS-SEEEEEETTSEEEEEETTTCC--EEEEEECCSSCEEEEEECSSSSCCEEEEEETTSCE
T ss_pred             EEEEeccCCCCEEEEEEecCC-CEEEEEeCCCeEEEEECCCCc--eEEEEcCCCCcEEEEEEecCCCceEEEEEeCCCeE
Confidence            456677899999999999998 889999999999999999888  78888899999999999983 23488999999999


Q ss_pred             EEEecCCCCCCCCCCceeeeccCCCCeeEEEEecCCCcEEEEecCCCcEEEEeCCcccccccCCCCC-------------
Q 021657          162 RMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRT-------------  228 (309)
Q Consensus       162 ~i~d~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~dg~i~iwd~~~~~~~~~~~~~~-------------  228 (309)
                      ++||+++      ++.+..+.+|...|++++|+|+++. +++++.||.|++||++............             
T Consensus       726 ~vwd~~~------~~~~~~~~~h~~~v~~~~~sp~~~~-l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~  798 (1249)
T 3sfz_A          726 KLWDLNQ------KECRNTMFGHTNSVNHCRFSPDDEL-LASCSADGTLRLWDVRSANERKSINVKRFFLSSEDPPEDVE  798 (1249)
T ss_dssp             EEEETTS------SSEEEEECCCSSCEEEEEECSSTTE-EEEEESSSEEEEEEGGGTEEEEEEECCCCC--------CCC
T ss_pred             EEEECCC------cchhheecCCCCCEEEEEEecCCCE-EEEEECCCeEEEEeCCCCcccceecccccccccCCcccccc
Confidence            9999999      8899999999999999999999995 6799999999999998643211100000             


Q ss_pred             ---------cC-----------------CCCceee-eecCCCcceeeEEEccCCCeEEEEecCCCCCCCCCCeEEEEEcc
Q 021657          229 ---------TN-----------------YPAGLFF-QHAGHRDKVVDFHWNASDPWTVVSVSDDCDSTGGGGTLQIWRMS  281 (309)
Q Consensus       229 ---------~~-----------------~~~~~~~-~~~~~~~~v~~~~~~~~~~~~~~s~s~d~~s~~~dg~v~vw~~~  281 (309)
                               ..                 ....... ...+|...|.+++|+|++..++        +++.||.|++||+.
T Consensus       799 ~~v~~~~~s~dg~~l~~~~~~~v~~~d~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~--------~~~~dg~v~vwd~~  870 (1249)
T 3sfz_A          799 VIVKCCSWSADGDKIIVAAKNKVLLFDIHTSGLLAEIHTGHHSTIQYCDFSPYDHLAV--------IALSQYCVELWNID  870 (1249)
T ss_dssp             CCBCCCCBCTTSSEEEEEETTEEEEEETTTCCEEEEEECSSSSCCCEEEECSSTTEEE--------EECSSSCEEEEETT
T ss_pred             ceEEEEEECCCCCEEEEEcCCcEEEEEecCCCceeEEcCCCCCceEEEEEcCCCCEEE--------EEeCCCeEEEEEcC
Confidence                     00                 0001111 2237889999999999888655        45555999999999


Q ss_pred             ccccCChhhHhHhhhcccceEEEeeeCC
Q 021657          282 DLIYRPQDEVLAELEKFKAHVISCTSKP  309 (309)
Q Consensus       282 ~~~~~~~~~~~~~~~~h~~~v~~~~~~P  309 (309)
                            ++.++..+.+|.+.|.+++|+|
T Consensus       871 ------~~~~~~~~~~h~~~v~~v~~sp  892 (1249)
T 3sfz_A          871 ------SRLKVADCRGHLSWVHGVMFSP  892 (1249)
T ss_dssp             ------TTEEEEEECCCSSCEEEEEECT
T ss_pred             ------CCceeeecCCCccceEEEEECC
Confidence                  6778888999999999999987

>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*

Probab=100.00  E-value=1.5e-34  Score=241.67  Aligned_cols=230  Identities=22%  Similarity=0.341  Sum_probs=189.7

Q ss_pred             cccCCCCCcceEEEEECCCCCEEEEecCCCcEEEEeCCccccccccCCccccccCCCCceeecCCCCCCCCcccCCCCCc
Q 021657            2 EILTGHQDNAEFALAMCPTEPYVLSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSV   81 (309)
Q Consensus         2 ~~l~~H~~~~V~~~~~~~~~~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (309)
                      +.|++|.+..++++.+  ++++|++|+.||+|++||+.+                                        .
T Consensus       115 ~~l~~h~~~v~~~~~~--~~~~l~sgs~dg~i~vwd~~~----------------------------------------~  152 (464)
T 3v7d_B          115 TTLRGHMTSVITCLQF--EDNYVITGADDKMIRVYDSIN----------------------------------------K  152 (464)
T ss_dssp             EEEECCSSSCEEEEEE--ETTEEEEEETTSCEEEEETTT----------------------------------------T
T ss_pred             EEEcCCCCCcEEEEEE--CCCEEEEEcCCCcEEEEECCC----------------------------------------C
Confidence            3688999955677777  568999999999999999874                                        3


Q ss_pred             CcccccccccCCeEEEEEecCCCcEEEEEcCCCeEEEEEcCCCCcceEEEeeccCCceeEEEecc-CCCCeEEEEcCCCc
Q 021657           82 GPRGIYNGHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNP-LDDNLILTGSADNS  160 (309)
Q Consensus        82 ~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~~l~~~~~dg~  160 (309)
                      +.+..+.+|.+.|++++|+|++  +|++|+.||+|++||+++++  ....+.+|...|.+++|++ .++.++++|+.||.
T Consensus       153 ~~~~~~~~h~~~V~~l~~~~~~--~l~s~s~dg~i~vwd~~~~~--~~~~~~~h~~~v~~l~~~~~~~~~~l~s~s~d~~  228 (464)
T 3v7d_B          153 KFLLQLSGHDGGVWALKYAHGG--ILVSGSTDRTVRVWDIKKGC--CTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNT  228 (464)
T ss_dssp             EEEEEECCCSSCEEEEEECSTT--EEEEEETTSCEEEEETTTTE--EEEEECCCSSCEEEEEEEESSSCEEEEEEETTSC
T ss_pred             cEEEEEeCCCcCEEEEEEcCCC--EEEEEeCCCCEEEEECCCCc--EEEEECCCCCccEEEEEecCCCCCEEEEEcCCCc
Confidence            3456677899999999999876  79999999999999999887  6778889999999999984 16789999999999


Q ss_pred             EEEEecCCCCCCCC-----------------CCceeeeccCCCCeeEEEEecCCCcEEEEecCCCcEEEEeCCccccccc
Q 021657          161 VRMFDRRNLTSNGV-----------------GSPINKFEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVE  223 (309)
Q Consensus       161 i~i~d~~~~~~~~~-----------------~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~dg~i~iwd~~~~~~~~~  223 (309)
                      |++||+++......                 ...+..+.+|...+.++  ++++.. +++++.||.|++||++.      
T Consensus       229 i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~--~~~~~~-l~~~~~d~~i~vwd~~~------  299 (464)
T 3v7d_B          229 LHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMASVRTV--SGHGNI-VVSGSYDNTLIVWDVAQ------  299 (464)
T ss_dssp             EEEEECCCCCCC------CCSSEEESCGGGCTTEEEEECCCSSCEEEE--EEETTE-EEEEETTSCEEEEETTT------
T ss_pred             EEEeeCCCCcccccccccCCcceEeeccCCCeEEEEEccCccceEEEE--cCCCCE-EEEEeCCCeEEEEECCC------
Confidence            99999987431100                 00245667788888776  567775 67999999999999987      


Q ss_pred             CCCCCcCCCCceeeeecCCCcceeeEEEccCCCeEEEEecCCCCCCCCCCeEEEEEccccccCChhhHhHhhhcccceEE
Q 021657          224 QGPRTTNYPAGLFFQHAGHRDKVVDFHWNASDPWTVVSVSDDCDSTGGGGTLQIWRMSDLIYRPQDEVLAELEKFKAHVI  303 (309)
Q Consensus       224 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~s~d~~s~~~dg~v~vw~~~~~~~~~~~~~~~~~~~h~~~v~  303 (309)
                               ...+..+.+|...|.+++|+|++..++        +|+.||.|++||+.      +++++.++.+|...|.
T Consensus       300 ---------~~~~~~~~~~~~~v~~~~~~~~~~~l~--------sg~~dg~i~vwd~~------~~~~~~~~~~h~~~v~  356 (464)
T 3v7d_B          300 ---------MKCLYILSGHTDRIYSTIYDHERKRCI--------SASMDTTIRIWDLE------NGELMYTLQGHTALVG  356 (464)
T ss_dssp             ---------TEEEEEECCCSSCEEEEEEETTTTEEE--------EEETTSCEEEEETT------TTEEEEEECCCSSCEE
T ss_pred             ---------CcEEEEecCCCCCEEEEEEcCCCCEEE--------EEeCCCcEEEEECC------CCcEEEEEeCCCCcEE
Confidence                     455677889999999999999888655        45555999999998      6888899999999999


Q ss_pred             EeeeCC
Q 021657          304 SCTSKP  309 (309)
Q Consensus       304 ~~~~~P  309 (309)
                      +++|+|
T Consensus       357 ~~~~~~  362 (464)
T 3v7d_B          357 LLRLSD  362 (464)
T ss_dssp             EEEECS
T ss_pred             EEEEcC
Confidence            999875

>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*

Probab=100.00  E-value=1.3e-34  Score=241.98  Aligned_cols=260  Identities=21%  Similarity=0.289  Sum_probs=203.1

Q ss_pred             cccCCCCCcceEEEEECCCCCEEEEecCCCcEEEEeCCccccccccCCc----cccccCCCCceeecCCCCCCCCcccCC
Q 021657            2 EILTGHQDNAEFALAMCPTEPYVLSGGKDKSVVLWSIQDHITSSATDPA----TAKSAGSSGSIIKQSPKPGDGNDKAAD   77 (309)
Q Consensus         2 ~~l~~H~~~~V~~~~~~~~~~~l~t~~~dg~i~vwd~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~   77 (309)
                      +.+.+|.+ .|++++|+|++ +|++|+.||+|++||++++.........    .............+..+..++.+.+|+
T Consensus       156 ~~~~~h~~-~V~~l~~~~~~-~l~s~s~dg~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~l~s~s~d~~i~vwd  233 (464)
T 3v7d_B          156 LQLSGHDG-GVWALKYAHGG-ILVSGSTDRTVRVWDIKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWK  233 (464)
T ss_dssp             EEECCCSS-CEEEEEECSTT-EEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEEESSSCEEEEEEETTSCEEEEE
T ss_pred             EEEeCCCc-CEEEEEEcCCC-EEEEEeCCCCEEEEECCCCcEEEEECCCCCccEEEEEecCCCCCEEEEEcCCCcEEEee
Confidence            46789999 89999999988 9999999999999999987443332211    111111111122344455678888888


Q ss_pred             CCCcCc-----------------------ccccccccCCeEEEEEecCCCcEEEEEcCCCeEEEEEcCCCCcceEEEeec
Q 021657           78 GPSVGP-----------------------RGIYNGHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPVIKVEKA  134 (309)
Q Consensus        78 ~~~~~~-----------------------~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~  134 (309)
                      ..+...                       ...+.+|...|.++  ++++ .++++|+.||.|++||+++++  ....+.+
T Consensus       234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~--~~~~-~~l~~~~~d~~i~vwd~~~~~--~~~~~~~  308 (464)
T 3v7d_B          234 LPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMASVRTV--SGHG-NIVVSGSYDNTLIVWDVAQMK--CLYILSG  308 (464)
T ss_dssp             CCCCCCC------CCSSEEESCGGGCTTEEEEECCCSSCEEEE--EEET-TEEEEEETTSCEEEEETTTTE--EEEEECC
T ss_pred             CCCCcccccccccCCcceEeeccCCCeEEEEEccCccceEEEE--cCCC-CEEEEEeCCCeEEEEECCCCc--EEEEecC
Confidence            776543                       34567888888877  4556 789999999999999998877  6778889


Q ss_pred             cCCceeEEEeccCCCCeEEEEcCCCcEEEEecCCCCCCCCCCceeeeccCCCCeeEEEEecCCCcEEEEecCCCcEEEEe
Q 021657          135 HDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWD  214 (309)
Q Consensus       135 ~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~dg~i~iwd  214 (309)
                      |...|.+++|+| +++++++|+.||.|++||+++      ++++..+.+|...|.+++|++  . .+++++.||.|++||
T Consensus       309 ~~~~v~~~~~~~-~~~~l~sg~~dg~i~vwd~~~------~~~~~~~~~h~~~v~~~~~~~--~-~l~s~s~dg~v~vwd  378 (464)
T 3v7d_B          309 HTDRIYSTIYDH-ERKRCISASMDTTIRIWDLEN------GELMYTLQGHTALVGLLRLSD--K-FLVSAAADGSIRGWD  378 (464)
T ss_dssp             CSSCEEEEEEET-TTTEEEEEETTSCEEEEETTT------TEEEEEECCCSSCEEEEEECS--S-EEEEEETTSEEEEEE
T ss_pred             CCCCEEEEEEcC-CCCEEEEEeCCCcEEEEECCC------CcEEEEEeCCCCcEEEEEEcC--C-EEEEEeCCCcEEEEE
Confidence            999999999999 999999999999999999999      899999999999999999984  4 467999999999999


Q ss_pred             CCcccccccCCCCCcCCCCceeeeecCCCcceeeEEEccCCCeEEEEecCCCCCCCCCCeEEEEEccccccCChhhHhHh
Q 021657          215 YEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKVVDFHWNASDPWTVVSVSDDCDSTGGGGTLQIWRMSDLIYRPQDEVLAE  294 (309)
Q Consensus       215 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~s~d~~s~~~dg~v~vw~~~~~~~~~~~~~~~~  294 (309)
                      ++...               ..... .+...+..++|+|++..++ +++        ||.|++||+.      +++++..
T Consensus       379 ~~~~~---------------~~~~~-~~~~~~~~~~~~~~~~~l~-~~~--------dg~i~iwd~~------~g~~~~~  427 (464)
T 3v7d_B          379 ANDYS---------------RKFSY-HHTNLSAITTFYVSDNILV-SGS--------ENQFNIYNLR------SGKLVHA  427 (464)
T ss_dssp             TTTCC---------------EEEEE-ECTTCCCEEEEEECSSEEE-EEE--------TTEEEEEETT------TCCEEES
T ss_pred             CCCCc---------------eeeee-cCCCCccEEEEEeCCCEEE-Eec--------CCeEEEEECC------CCcEEeh
Confidence            98722               12222 3566788889999877544 333        4899999999      6777765


Q ss_pred             -hhcccceEEEeeeCC
Q 021657          295 -LEKFKAHVISCTSKP  309 (309)
Q Consensus       295 -~~~h~~~v~~~~~~P  309 (309)
                       +.+|.+.|++++|++
T Consensus       428 ~~~~~~~~v~~v~~~~  443 (464)
T 3v7d_B          428 NILKDADQIWSVNFKG  443 (464)
T ss_dssp             CTTTTCSEEEEEEEET
T ss_pred             hhccCCCcEEEEEecC
Confidence             677899999999863

>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A

Probab=100.00  E-value=4e-35  Score=237.16  Aligned_cols=263  Identities=9%  Similarity=0.064  Sum_probs=180.8

Q ss_pred             CcceEEEEECCCCCEEEEecCCC-------cEEEEeCCccccccc------------cCCc--cccccCCCCce------
Q 021657            9 DNAEFALAMCPTEPYVLSGGKDK-------SVVLWSIQDHITSSA------------TDPA--TAKSAGSSGSI------   61 (309)
Q Consensus         9 ~~~V~~~~~~~~~~~l~t~~~dg-------~i~vwd~~~~~~~~~------------~~~~--~~~~~~~~~~~------   61 (309)
                      +-||++++|+||+++|++|+.|.       .|++|++........            ....  ..........+      
T Consensus        14 g~PV~sv~fs~dg~~l~sGGg~~~~sGi~N~i~~w~~~~~~~~~~~~~~~~~~~~l~~~~~~v~s~~~~~~~~~~g~~~~   93 (365)
T 4h5i_A           14 GYPAYGAKFLNNDTLLVAGGGGEGNNGIPNKLTVLRVDPTKDTEKEQFHILSEFALEDNDDSPTAIDASKGIILVGCNEN   93 (365)
T ss_dssp             SSCEEEEEEEETTEEEEEEECCSSSSSCCEEEEEEEECTTSSSHHHHEEEEEEEECCTTSCCCCEEEEETTEEEEECCCC
T ss_pred             CCCEEEEEEeCCCcEEEEECCCccccCCCCEEEEEEEcCCCcceeeeeeeeeEEEccCCCCceEEEEeCCCEEEEEECCC
Confidence            34899999999999999987543       599999876522110            0000  00111111000      


Q ss_pred             -eecCCCCCCCCcccCCCCCcCccc---------ccccccCCeEEEEEecCCCcEEE--EEcCCCeEEEEEcCCCCcceE
Q 021657           62 -IKQSPKPGDGNDKAADGPSVGPRG---------IYNGHEDTVEDVTFCPSSAQEFC--SVGDDSCLILWDARVGTSPVI  129 (309)
Q Consensus        62 -~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~v~~~~~~~~~~~~l~--s~~~dg~i~iwd~~~~~~~~~  129 (309)
                       ..+..+..+..+++|+........         ....+...+.+++|+|+| ++++  +++.|++|+|||+.+++  ..
T Consensus        94 ~~~l~s~~~d~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~fSpDg-~~la~as~~~d~~i~iwd~~~~~--~~  170 (365)
T 4h5i_A           94 STKITQGKGNKHLRKFKYDKVNDQLEFLTSVDFDASTNADDYTKLVYISREG-TVAAIASSKVPAIMRIIDPSDLT--EK  170 (365)
T ss_dssp             HHHHHHTSCCCCEEEEEEETTTTEEEEEEEECSSCCCCTTCCEEEEEECTTS-SCEEEEESCSSCEEEEEETTTTE--EE
T ss_pred             ccEEEEecCCCcEEEEEecCCCceEEEeeeeceeecCCcccCEEEEEEcCCC-CEEEEEECCCCCEEEEeECCCCc--EE
Confidence             111123345666676654332211         112344568899999999 5554  45579999999998877  44


Q ss_pred             EEeeccCCceeEEEeccCCCCeEEEEcCCCcEEEEecCCCCCCCCCCcee--eeccCCCCeeEEEEecCCCcEEEEecCC
Q 021657          130 KVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPIN--KFEGHSAAVLCVQWSPDKSSVFGSSAED  207 (309)
Q Consensus       130 ~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~--~~~~~~~~v~~~~~~~~~~~l~~~~~~d  207 (309)
                      ..+ .|...|.+++|+| +++++++++.+ .+++|+..+      ++.+.  ....|...|.+++|+|++.. +++++.|
T Consensus       171 ~~~-~~~~~V~~v~fsp-dg~~l~s~s~~-~~~~~~~~~------~~~~~~~~~~~~~~~v~~v~fspdg~~-l~~~s~d  240 (365)
T 4h5i_A          171 FEI-ETRGEVKDLHFST-DGKVVAYITGS-SLEVISTVT------GSCIARKTDFDKNWSLSKINFIADDTV-LIAASLK  240 (365)
T ss_dssp             EEE-ECSSCCCEEEECT-TSSEEEEECSS-CEEEEETTT------CCEEEEECCCCTTEEEEEEEEEETTEE-EEEEEES
T ss_pred             EEe-CCCCceEEEEEcc-CCceEEeccce-eEEEEEecc------CcceeeeecCCCCCCEEEEEEcCCCCE-EEEEecC
Confidence            444 4778899999999 99999999855 566666666      44443  34567888999999999996 4577766


Q ss_pred             C----cEEEEeCCcccccccCCCCCcCCCCceeeeecCCCcceeeEEEccCCCeEEEEecCCCCCCCCCCeEEEEEcccc
Q 021657          208 G----LLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKVVDFHWNASDPWTVVSVSDDCDSTGGGGTLQIWRMSDL  283 (309)
Q Consensus       208 g----~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~s~d~~s~~~dg~v~vw~~~~~  283 (309)
                      +    .+++|++......           ......+.+|...|++++|+|++.+ +|++       +.|++|+|||+.  
T Consensus       241 ~~~~~~i~~~~~~~~~~~-----------~~~~~~~~~~~~~V~~~~~Spdg~~-lasg-------s~D~~V~iwd~~--  299 (365)
T 4h5i_A          241 KGKGIVLTKISIKSGNTS-----------VLRSKQVTNRFKGITSMDVDMKGEL-AVLA-------SNDNSIALVKLK--  299 (365)
T ss_dssp             SSCCEEEEEEEEETTEEE-----------EEEEEEEESSCSCEEEEEECTTSCE-EEEE-------ETTSCEEEEETT--
T ss_pred             CcceeEEeecccccceec-----------ceeeeeecCCCCCeEeEEECCCCCc-eEEE-------cCCCEEEEEECC--
Confidence            6    5788888762221           1124566789999999999998875 4544       445999999999  


Q ss_pred             ccCChhhHhHh-hhcccceEEEeeeCC
Q 021657          284 IYRPQDEVLAE-LEKFKAHVISCTSKP  309 (309)
Q Consensus       284 ~~~~~~~~~~~-~~~h~~~v~~~~~~P  309 (309)
                          +++++.+ +.+|.++|++++|+|
T Consensus       300 ----~~~~~~~~~~gH~~~V~~v~fSp  322 (365)
T 4h5i_A          300 ----DLSMSKIFKQAHSFAITEVTISP  322 (365)
T ss_dssp             ----TTEEEEEETTSSSSCEEEEEECT
T ss_pred             ----CCcEEEEecCcccCCEEEEEECC
Confidence                6788877 578999999999998

>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}

Probab=100.00  E-value=1.3e-34  Score=234.63  Aligned_cols=246  Identities=13%  Similarity=0.154  Sum_probs=190.6

Q ss_pred             cccCCCCCcceEEEEECCCCCEEEEecCCCcEEEEeCCccccccccCC---ccccccCCCCceeecCC---CCCCCCccc
Q 021657            2 EILTGHQDNAEFALAMCPTEPYVLSGGKDKSVVLWSIQDHITSSATDP---ATAKSAGSSGSIIKQSP---KPGDGNDKA   75 (309)
Q Consensus         2 ~~l~~H~~~~V~~~~~~~~~~~l~t~~~dg~i~vwd~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~---~~~~~~~~~   75 (309)
                      +.+.+|.+ .|++++|+|++++|++++.||.|++||+.++........   .................   ....+.+.+
T Consensus        68 ~~~~~h~~-~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~~~g~i~~  146 (369)
T 3zwl_B           68 GTLDGHTG-TIWSIDVDCFTKYCVTGSADYSIKLWDVSNGQCVATWKSPVPVKRVEFSPCGNYFLAILDNVMKNPGSINI  146 (369)
T ss_dssp             EEECCCSS-CEEEEEECTTSSEEEEEETTTEEEEEETTTCCEEEEEECSSCEEEEEECTTSSEEEEEECCBTTBCCEEEE
T ss_pred             hhhhhcCC-cEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEeecCCCeEEEEEccCCCEEEEecCCccCCCCEEEE
Confidence            46788999 899999999999999999999999999987743332221   11111111221111111   122367777


Q ss_pred             CCCCCcC-----------cccccccccC--CeEEEEEecCCCcEEEEEcCCCeEEEEEcCCCCcceEEEeeccCCceeEE
Q 021657           76 ADGPSVG-----------PRGIYNGHED--TVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCV  142 (309)
Q Consensus        76 ~~~~~~~-----------~~~~~~~~~~--~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~  142 (309)
                      |+.....           ....+..|..  .+.+++|+|++ .+|++++.||.|++||+++... ....+..|...|.++
T Consensus       147 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~l~~~~~dg~i~i~d~~~~~~-~~~~~~~~~~~v~~~  224 (369)
T 3zwl_B          147 YEIERDSATHELTKVSEEPIHKIITHEGLDAATVAGWSTKG-KYIIAGHKDGKISKYDVSNNYE-YVDSIDLHEKSISDM  224 (369)
T ss_dssp             EEEEECTTTCCEEEECSSCSEEEECCTTCCCEEEEEECGGG-CEEEEEETTSEEEEEETTTTTE-EEEEEECCSSCEEEE
T ss_pred             EEecCCccceeecccccceeeeccCCcCccceeEEEEcCCC-CEEEEEcCCCEEEEEECCCCcE-eEEEEecCCCceeEE
Confidence            7765543           3344455665  89999999998 7899999999999999987332 677778899999999


Q ss_pred             EeccCCCCeEEEEcCCCcEEEEecCCCCCCCCCCceeeeccCCCCeeEEEEecCCCcEEEEecCCC--------------
Q 021657          143 DWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAEDG--------------  208 (309)
Q Consensus       143 ~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~dg--------------  208 (309)
                      +|+| ++.+|++++.|+.|++||+++      ++.+..+. +...+.+++|+|+++++ ++++.++              
T Consensus       225 ~~~~-~~~~l~~~~~d~~i~v~d~~~------~~~~~~~~-~~~~~~~~~~~~~~~~l-~~~~~~~~~~~~~~~~~~~~~  295 (369)
T 3zwl_B          225 QFSP-DLTYFITSSRDTNSFLVDVST------LQVLKKYE-TDCPLNTAVITPLKEFI-ILGGGQEAKDVTTTSANEGKF  295 (369)
T ss_dssp             EECT-TSSEEEEEETTSEEEEEETTT------CCEEEEEE-CSSCEEEEEECSSSSEE-EEEECCC-------------C
T ss_pred             EECC-CCCEEEEecCCceEEEEECCC------Cceeeeec-CCCCceeEEecCCCceE-EEeecCCCceEEEEecCCCcc
Confidence            9999 999999999999999999998      78888887 67889999999999975 5777677              


Q ss_pred             cEEEEeCCcccccccCCCCCcCCCCceeeeecCCCcceeeEEEccCCCeEEEEecCCCCCCCCCCeEEEEEccc
Q 021657          209 LLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKVVDFHWNASDPWTVVSVSDDCDSTGGGGTLQIWRMSD  282 (309)
Q Consensus       209 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~s~d~~s~~~dg~v~vw~~~~  282 (309)
                      .+++||+..               ...+..+.+|...|.+++|+|++.+++        +++.||.|++|++..
T Consensus       296 ~i~~~d~~~---------------~~~~~~~~~~~~~v~~~~~s~~~~~l~--------s~~~dg~v~iw~~~~  346 (369)
T 3zwl_B          296 EARFYHKIF---------------EEEIGRVQGHFGPLNTVAISPQGTSYA--------SGGEDGFIRLHHFEK  346 (369)
T ss_dssp             EEEEEETTT---------------CCEEEEEECCSSCEEEEEECTTSSEEE--------EEETTSEEEEEEECH
T ss_pred             eeEEEecCC---------------CcchhheecccCcEEEEEECCCCCEEE--------EEcCCCeEEEEECcc
Confidence            899999887               455667889999999999999887655        444559999999983

>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}

Probab=100.00  E-value=1e-34  Score=258.99  Aligned_cols=236  Identities=11%  Similarity=0.091  Sum_probs=174.9

Q ss_pred             cCCCCCcceEEEEECCCCCEEEEecCCCcEEEEeCCccccccccCCccccccCCCCceeecCCCCCCCCcccCCCCCcCc
Q 021657            4 LTGHQDNAEFALAMCPTEPYVLSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGP   83 (309)
Q Consensus         4 l~~H~~~~V~~~~~~~~~~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   83 (309)
                      ..||.+ .|++++|+|++++||+|+.||+|+||+.....                                        .
T Consensus        13 ~~gh~~-~V~~lafspdg~~lAsgs~Dg~I~lw~~~~~~----------------------------------------~   51 (902)
T 2oaj_A           13 KYGMSS-KPIAAAFDFTQNLLAIATVTGEVHIYGQQQVE----------------------------------------V   51 (902)
T ss_dssp             EEECSS-CEEEEEEETTTTEEEEEETTSEEEEECSTTCE----------------------------------------E
T ss_pred             ccCCCC-CcEEEEECCCCCEEEEEeCCCEEEEEeCCCcE----------------------------------------E
Confidence            458888 89999999999999999999999999976321                                        1


Q ss_pred             ccccccccCCeEEEEEecCCCcEEEEEcCCCeEEEEEcCCCCcceEEEeeccCCceeEEEeccCCCCeEEEEcCCCcEEE
Q 021657           84 RGIYNGHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRM  163 (309)
Q Consensus        84 ~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i  163 (309)
                      .. ...|...|.+++|+| + .+|++++.|++|++||+.+++  ....+. |...|++++|+| +++++++|+.||.|++
T Consensus        52 ~~-~~~~~~~V~~l~fsp-g-~~L~S~s~D~~v~lWd~~~~~--~~~~~~-~~~~V~~v~~sp-~g~~l~sgs~dg~V~l  124 (902)
T 2oaj_A           52 VI-KLEDRSAIKEMRFVK-G-IYLVVINAKDTVYVLSLYSQK--VLTTVF-VPGKITSIDTDA-SLDWMLIGLQNGSMIV  124 (902)
T ss_dssp             EE-ECSSCCCEEEEEEET-T-TEEEEEETTCEEEEEETTTCS--EEEEEE-CSSCEEEEECCT-TCSEEEEEETTSCEEE
T ss_pred             EE-EcCCCCCEEEEEEcC-C-CEEEEEECcCeEEEEECCCCc--EEEEEc-CCCCEEEEEECC-CCCEEEEEcCCCcEEE
Confidence            11 123678999999999 7 689999999999999999887  555554 678999999999 9999999999999999


Q ss_pred             EecCCCCCCCCCCce-----------eeeccCCCCeeEEEEecCCCcEEEEecCCCcEEEEeCCcccccccCCCCCcC-C
Q 021657          164 FDRRNLTSNGVGSPI-----------NKFEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTN-Y  231 (309)
Q Consensus       164 ~d~~~~~~~~~~~~~-----------~~~~~~~~~v~~~~~~~~~~~l~~~~~~dg~i~iwd~~~~~~~~~~~~~~~~-~  231 (309)
                      ||+++      .+..           ..+.+|...|++++|+|++..++++|+.||.| +||++.............. .
T Consensus       125 wd~~~------~~~~~~~i~~~~~~~~~~~~h~~~V~sl~~sp~~~~~l~~g~~dg~v-lWd~~~~~~~~~~~~~~~~g~  197 (902)
T 2oaj_A          125 YDIDR------DQLSSFKLDNLQKSSFFPAARLSPIVSIQWNPRDIGTVLISYEYVTL-TYSLVENEIKQSFIYELPPFA  197 (902)
T ss_dssp             EETTT------TEEEEEEECCHHHHHTCSSSCCCCCCEEEEETTEEEEEEEECSSCEE-EEETTTTEEEEEECCCBCTTC
T ss_pred             EECCC------CccccceeccccccccccccCCCCeEEEEEccCCCCEEEEEeCCCcE-EEECCCCceEEEEecccCCcC
Confidence            99987      4432           33467889999999999765567899999999 9999873221110000000 0


Q ss_pred             CC--ceeeeecCCCcceeeEEEccCCCeEEEEecCCCCCCCCCCeEEEEEccccccCChhhHhHh--h---h--------
Q 021657          232 PA--GLFFQHAGHRDKVVDFHWNASDPWTVVSVSDDCDSTGGGGTLQIWRMSDLIYRPQDEVLAE--L---E--------  296 (309)
Q Consensus       232 ~~--~~~~~~~~~~~~v~~~~~~~~~~~~~~s~s~d~~s~~~dg~v~vw~~~~~~~~~~~~~~~~--~---~--------  296 (309)
                      +.  ........|...|++++|+|++.++ +       +|+.||.|++||++      +++++..  +   .        
T Consensus       198 ~~~~~~~~~~~~h~~~V~~v~fspdg~~l-a-------sgs~Dg~i~lWd~~------~g~~~~~r~l~~~~~~~~~~~~  263 (902)
T 2oaj_A          198 PGGDFSEKTNEKRTPKVIQSLYHPNSLHI-I-------TIHEDNSLVFWDAN------SGHMIMARTVFETEINVPQPDY  263 (902)
T ss_dssp             CCSTTCCCTTSCBCCCEEEEEECTTSSEE-E-------EEETTCCEEEEETT------TCCEEEEECSSCSCTTSCCTTC
T ss_pred             CCcccccccccccCCCeEEEEEcCCCCEE-E-------EEECCCeEEEEECC------CCcEEEEEeecccccCCCCCcC
Confidence            00  0001123456789999999987754 5       44455999999998      3443321  1   1        


Q ss_pred             -----cccceEEEeeeC
Q 021657          297 -----KFKAHVISCTSK  308 (309)
Q Consensus       297 -----~h~~~v~~~~~~  308 (309)
                           .|.++|.+++|+
T Consensus       264 ~~~~~~~~~~V~~v~w~  280 (902)
T 2oaj_A          264 IRDSSTNAAKISKVYWM  280 (902)
T ss_dssp             CCCCSSCCCEEEEEEEE
T ss_pred             CCCCccccCCeeEEEEE
Confidence                 245689999995

>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}

Probab=100.00  E-value=3.2e-34  Score=227.92  Aligned_cols=247  Identities=19%  Similarity=0.358  Sum_probs=183.8

Q ss_pred             cCCCCCcceEEEEECCCCCEEEEecCCCcEEEEeCCccccccccCCccccccCCCCceeecCCCCCCCCcccCCCCCc-C
Q 021657            4 LTGHQDNAEFALAMCPTEPYVLSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSV-G   82 (309)
Q Consensus         4 l~~H~~~~V~~~~~~~~~~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~   82 (309)
                      +.+|.. .|++++|+|++++|++|+.||+|++||++++......................+..+..++.+..+..... .
T Consensus        63 ~~~~~~-~V~~v~~~~~~~~l~sgs~Dg~v~iw~~~~~~~~~~~~~h~~~~~~~~~~~~~l~s~~~~~~~~~~~~~~~~~  141 (318)
T 4ggc_A           63 MEQPGE-YISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKRLRNMTSHSARVGSLSWNSYILSSGSRSGHIHHHDVRVAEH  141 (318)
T ss_dssp             CCSTTC-CEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEEETTEEEEEETTSEEEEEETTSSSC
T ss_pred             ecCCCC-eEEEEEECCCCCEEEEEECCCcEEEeecCCceeEEEecCccceEEEeecCCCEEEEEecCCceEeeecCCCce
Confidence            456777 89999999999999999999999999999875433322111110000000112223344555555555443 4


Q ss_pred             cccccccccCCeEEEEEecCCCcEEEEEcCCCeEEEEEcCCCCcc--eEEEeeccCCceeEEEeccCCCCeE--EEEcCC
Q 021657           83 PRGIYNGHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSP--VIKVEKAHDADLHCVDWNPLDDNLI--LTGSAD  158 (309)
Q Consensus        83 ~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~--~~~~~~~~~~~v~~~~~~~~~~~~l--~~~~~d  158 (309)
                      .+..+.+|...+..+.+.+++ .+|++++.||.|++||+++++..  .......+...|.+++++|.+...+  ++++.+
T Consensus       142 ~~~~~~~~~~~~~~~~~~~~~-~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~  220 (318)
T 4ggc_A          142 HVATLSGHSQEVCGLRWAPDG-RHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSD  220 (318)
T ss_dssp             EEEEEECCSSCEEEEEECTTS-SEEEEEETTSCEEEEESSCBTTBSCCSEEECCCCSCEEEEEECTTSTTEEEEEECTTT
T ss_pred             eEEEEcCccCceEEEEEcCCC-CEEEEEecCcceeEEECCCCcccccceeeecccCCceEEEEecCCCCcEEEEEecCCC
Confidence            556778999999999999998 88999999999999999876532  3345567788999999999444444  466788


Q ss_pred             CcEEEEecCCCCCCCCCCceeeeccCCCCeeEEEEecCCCcEEEE-ecCCCcEEEEeCCcccccccCCCCCcCCCCceee
Q 021657          159 NSVRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWSPDKSSVFGS-SAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFF  237 (309)
Q Consensus       159 g~i~i~d~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~  237 (309)
                      +.|++||.+.      ....... .+...+..+.|+|++..++++ |+.|+.|++||+++               .+++.
T Consensus       221 ~~i~lwd~~~------~~~~~~~-~~~~~v~~~~~~~~~~~~~~~sg~~d~~i~iwd~~~---------------~~~~~  278 (318)
T 4ggc_A          221 RHIRIWNVCS------GACLSAV-DAHSQVCSILWSPHYKELISGHGFAQNQLVIWKYPT---------------MAKVA  278 (318)
T ss_dssp             CEEEEEETTT------CCEEEEE-ECSSCEEEEEEETTTTEEEEEECTTTCCEEEEETTT---------------CCEEE
T ss_pred             CEEEEEeccc------ccccccc-cceeeeeeeeecccccceEEEEEcCCCEEEEEECCC---------------CcEEE
Confidence            9999999987      5555444 467789999999999976543 45799999999987               45677


Q ss_pred             eecCCCcceeeEEEccCCCeEEEEecCCCCCCCCCCeEEEEEccc
Q 021657          238 QHAGHRDKVVDFHWNASDPWTVVSVSDDCDSTGGGGTLQIWRMSD  282 (309)
Q Consensus       238 ~~~~~~~~v~~~~~~~~~~~~~~s~s~d~~s~~~dg~v~vw~~~~  282 (309)
                      .+.+|...|++++|+|++.+|+        ||+.||+|+|||+.+
T Consensus       279 ~l~gH~~~V~~l~~spdg~~l~--------S~s~D~~v~iWd~~~  315 (318)
T 4ggc_A          279 ELKGHTSRVLSLTMSPDGATVA--------SAAADETLRLWRCFE  315 (318)
T ss_dssp             EECCCSSCEEEEEECTTSSCEE--------EEETTTEEEEECCSC
T ss_pred             EEcCCCCCEEEEEEcCCCCEEE--------EEecCCeEEEEECCC
Confidence            8899999999999999888655        455559999999974

>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A

Probab=100.00  E-value=3.4e-34  Score=247.50  Aligned_cols=263  Identities=19%  Similarity=0.319  Sum_probs=205.7

Q ss_pred             cccCCCCCcc-eEEEEECC--CCCEEEEecCCCcEEEEeCCcc--------cccccc----CCccccccCCCCceeecCC
Q 021657            2 EILTGHQDNA-EFALAMCP--TEPYVLSGGKDKSVVLWSIQDH--------ITSSAT----DPATAKSAGSSGSIIKQSP   66 (309)
Q Consensus         2 ~~l~~H~~~~-V~~~~~~~--~~~~l~t~~~dg~i~vwd~~~~--------~~~~~~----~~~~~~~~~~~~~~~~~~~   66 (309)
                      +.+.+|.+ . |++++|+|  ++++|++|+.||.|+|||+.++        ......    ...................
T Consensus        57 ~~~~~h~~-~~v~~~~~sp~~~~~~l~s~~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~  135 (615)
T 1pgu_A           57 VQFTGHGS-SVVTTVKFSPIKGSQYLCSGDESGKVIVWGWTFDKESNSVEVNVKSEFQVLAGPISDISWDFEGRRLCVVG  135 (615)
T ss_dssp             EEECTTTT-SCEEEEEECSSTTCCEEEEEETTSEEEEEEEEEEGGGTEEEEEEEEEEECCSSCEEEEEECTTSSEEEEEE
T ss_pred             eEEecCCC-ceEEEEEECcCCCCCEEEEecCCCEEEEEeCCCCcccccccccccchhhcccccEEEEEEeCCCCEEEEec
Confidence            46789999 8 99999999  9999999999999999999643        111111    1111112222222222221


Q ss_pred             C--CCCCCcccCCCCCcCcccccccccCCeEEEEEecCCCcEEEEEcCCCeEEEEEcCCCCcceEEEeeccCC---ceeE
Q 021657           67 K--PGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPVIKVEKAHDA---DLHC  141 (309)
Q Consensus        67 ~--~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~---~v~~  141 (309)
                      .  ...+.+.+|+  ..+.+..+.+|...|.+++|+|+++.++++++.|+.|++||+.+.+  ....+..|..   .|.+
T Consensus       136 ~~~~~~~~v~~~d--~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~v~vwd~~~~~--~~~~~~~~~~~~~~v~~  211 (615)
T 1pgu_A          136 EGRDNFGVFISWD--SGNSLGEVSGHSQRINACHLKQSRPMRSMTVGDDGSVVFYQGPPFK--FSASDRTHHKQGSFVRD  211 (615)
T ss_dssp             CCSSCSEEEEETT--TCCEEEECCSCSSCEEEEEECSSSSCEEEEEETTTEEEEEETTTBE--EEEEECSSSCTTCCEEE
T ss_pred             cCCCCccEEEEEE--CCCcceeeecCCccEEEEEECCCCCcEEEEEeCCCcEEEEeCCCcc--eeeeecccCCCCceEEE
Confidence            1  1225777787  5567788899999999999999985589999999999999998777  6777888998   9999


Q ss_pred             EEeccCC-CCeEEEEcCCCcEEEEecCCCCCCCCCCceeee-c---cCCCCeeEEEEecCCCcEEEEecCCCcEEEEeCC
Q 021657          142 VDWNPLD-DNLILTGSADNSVRMFDRRNLTSNGVGSPINKF-E---GHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYE  216 (309)
Q Consensus       142 ~~~~~~~-~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~-~---~~~~~v~~~~~~~~~~~l~~~~~~dg~i~iwd~~  216 (309)
                      ++|+| + +++|++++.||.|++||+++      ++.+..+ .   .|...|.+++|+ ++.. +++++.|+.|++||++
T Consensus       212 ~~~~~-~~~~~l~~~~~dg~i~vwd~~~------~~~~~~~~~~~~~~~~~v~~~~~~-~~~~-l~~~~~d~~i~~wd~~  282 (615)
T 1pgu_A          212 VEFSP-DSGEFVITVGSDRKISCFDGKS------GEFLKYIEDDQEPVQGGIFALSWL-DSQK-FATVGADATIRVWDVT  282 (615)
T ss_dssp             EEECS-TTCCEEEEEETTCCEEEEETTT------CCEEEECCBTTBCCCSCEEEEEES-SSSE-EEEEETTSEEEEEETT
T ss_pred             EEECC-CCCCEEEEEeCCCeEEEEECCC------CCEeEEecccccccCCceEEEEEc-CCCE-EEEEcCCCcEEEEECC
Confidence            99999 7 99999999999999999998      8888888 5   799999999999 8885 6799999999999998


Q ss_pred             cccccccCCCCCcCCCCceeeeecCC----CcceeeEEEccCCCeEEEEecCCCCCCCCCCeEEEEEccccccCChhhHh
Q 021657          217 KVGKKVEQGPRTTNYPAGLFFQHAGH----RDKVVDFHWNASDPWTVVSVSDDCDSTGGGGTLQIWRMSDLIYRPQDEVL  292 (309)
Q Consensus       217 ~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~v~~~~~~~~~~~~~~s~s~d~~s~~~dg~v~vw~~~~~~~~~~~~~~  292 (309)
                      .               ...+..+..+    ...+.++.|. ++.+++        +++.||.|++||+.      .++++
T Consensus       283 ~---------------~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~--------~~~~~g~i~~~d~~------~~~~~  332 (615)
T 1pgu_A          283 T---------------SKCVQKWTLDKQQLGNQQVGVVAT-GNGRII--------SLSLDGTLNFYELG------HDEVL  332 (615)
T ss_dssp             T---------------TEEEEEEECCTTCGGGCEEEEEEE-ETTEEE--------EEETTSCEEEEETT------EEEEE
T ss_pred             C---------------CcEEEEEcCCCCcccCceeEEEeC-CCCeEE--------EEECCCCEEEEECC------CCcEE
Confidence            7               2333444444    4678888886 566554        44445999999998      67788


Q ss_pred             HhhhcccceEEEeeeCC
Q 021657          293 AELEKFKAHVISCTSKP  309 (309)
Q Consensus       293 ~~~~~h~~~v~~~~~~P  309 (309)
                      ..+.+|.+.|.+++| |
T Consensus       333 ~~~~~~~~~v~~~~~-~  348 (615)
T 1pgu_A          333 KTISGHNKGITALTV-N  348 (615)
T ss_dssp             EEECCCSSCEEEEET-T
T ss_pred             EEEeCCCCCEEEEEe-c
Confidence            888999999999988 6

>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*

Probab=100.00  E-value=7e-35  Score=241.56  Aligned_cols=245  Identities=14%  Similarity=0.121  Sum_probs=177.5

Q ss_pred             ccCCCCCcceEEEEECC-CCCEEEEecCCCcEEEEeCCccccccccCCccccccCCCCceeecCCCCCCCCcccCCCCCc
Q 021657            3 ILTGHQDNAEFALAMCP-TEPYVLSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSV   81 (309)
Q Consensus         3 ~l~~H~~~~V~~~~~~~-~~~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (309)
                      .+.+|.+ .|++|+|+| ++.+|+||+.||+|++||+++....                                     
T Consensus       159 ~~~gH~~-~V~~l~f~p~~~~~l~s~s~D~~v~iwd~~~~~~~-------------------------------------  200 (435)
T 4e54_B          159 KGIGAGG-SITGLKFNPLNTNQFYASSMEGTTRLQDFKGNILR-------------------------------------  200 (435)
T ss_dssp             CCCSSSC-CCCEEEECSSCTTEEEEECSSSCEEEEETTSCEEE-------------------------------------
T ss_pred             EccCCCC-CEEEEEEeCCCCCEEEEEeCCCEEEEeeccCCcee-------------------------------------
Confidence            4578999 899999998 6899999999999999999743111                                     


Q ss_pred             CcccccccccCCeEEEEEecCCCcEEEEEcCCCeEEEEEcCCCCcceEEEeeccCCceeEEEeccCCCCeEEEEcCCCcE
Q 021657           82 GPRGIYNGHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSV  161 (309)
Q Consensus        82 ~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i  161 (309)
                       .......+...+.+++|+|++ .+|++|+.||.|++||++..   ....+.+|...|.+++|+|....+|++|+.|+.|
T Consensus       201 -~~~~~~~~~~~~~~~~~~~~~-~~l~~g~~dg~i~~wd~~~~---~~~~~~~h~~~v~~v~~~p~~~~~~~s~s~d~~v  275 (435)
T 4e54_B          201 -VFASSDTINIWFCSLDVSASS-RMVVTGDNVGNVILLNMDGK---ELWNLRMHKKKVTHVALNPCCDWFLATASVDQTV  275 (435)
T ss_dssp             -EEECCSSCSCCCCCEEEETTT-TEEEEECSSSBEEEEESSSC---BCCCSBCCSSCEEEEEECTTCSSEEEEEETTSBC
T ss_pred             -EEeccCCCCccEEEEEECCCC-CEEEEEeCCCcEeeeccCcc---eeEEEecccceEEeeeecCCCceEEEEecCccee
Confidence             011112344567889999998 89999999999999998643   3566788999999999999444588899999999


Q ss_pred             EEEecCCCCCCCCCCceeeeccCCCCeeEEEEecCCCcEEEEecCCCcEEEEeCCcccccccCCCCCcCCCCceeeeecC
Q 021657          162 RMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAG  241 (309)
Q Consensus       162 ~i~d~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~  241 (309)
                      ++||+++...   ...+....+|...|++++|+|++.+ |++++.||.|+|||++.............         ...
T Consensus       276 ~iwd~~~~~~---~~~~~~~~~h~~~v~~~~~spdg~~-l~s~~~D~~i~iwd~~~~~~~~~~~~~~~---------~~~  342 (435)
T 4e54_B          276 KIWDLRQVRG---KASFLYSLPHRHPVNAACFSPDGAR-LLTTDQKSEIRVYSASQWDCPLGLIPHPH---------RHF  342 (435)
T ss_dssp             CEEETTTCCS---SSCCSBCCBCSSCEEECCBCTTSSE-EEEEESSSCEEEEESSSSSSEEEECCCCC---------CCC
T ss_pred             eEEecccccc---cceEEEeeeccccccceeECCCCCe-eEEEcCCCEEEEEECCCCccceEEecccc---------ccc
Confidence            9999998322   1223334578899999999999996 56999999999999987333221110000         000


Q ss_pred             CCcceeeEEEccCCCeEEEEecCCC----CCCCCCCeEEEEEccccccCChhhHhHhhh-cccceEEEe-eeCC
Q 021657          242 HRDKVVDFHWNASDPWTVVSVSDDC----DSTGGGGTLQIWRMSDLIYRPQDEVLAELE-KFKAHVISC-TSKP  309 (309)
Q Consensus       242 ~~~~v~~~~~~~~~~~~~~s~s~d~----~s~~~dg~v~vw~~~~~~~~~~~~~~~~~~-~h~~~v~~~-~~~P  309 (309)
                      ....+....|+|++..++++.+.|.    .++..++.|++||..      +++++..+. +|...|.++ +|+|
T Consensus       343 ~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~i~iwd~~------~g~~~~~l~~~~~~~v~s~~~fsp  410 (435)
T 4e54_B          343 QHLTPIKAAWHPRYNLIVVGRYPDPNFKSCTPYELRTIDVFDGN------SGKMMCQLYDPESSGISSLNEFNP  410 (435)
T ss_dssp             SSSCCCBCEECSSSSCEEEECCCCTTSCCSSTTCCCCEEEECSS------SCCEEEEECCSSCCCCCCEEEECT
T ss_pred             ccceeEEEEEcCCCCEEEEEEcCCCCeEEEEecCCCEEEEEECC------CCcEEEEEeCCCCCcEEEEEEECC
Confidence            1112345667777766665555442    145566789999998      566666654 677888887 6887

>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*

Probab=100.00  E-value=3.4e-34  Score=238.24  Aligned_cols=255  Identities=20%  Similarity=0.346  Sum_probs=204.1

Q ss_pred             cccCCCCCcceEEEEECCCCCEEEEecCCCcEEEEeCCccccccccCCccc--cccCCCCceeecCCCCCCCCcccCCCC
Q 021657            2 EILTGHQDNAEFALAMCPTEPYVLSGGKDKSVVLWSIQDHITSSATDPATA--KSAGSSGSIIKQSPKPGDGNDKAADGP   79 (309)
Q Consensus         2 ~~l~~H~~~~V~~~~~~~~~~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~   79 (309)
                      +.+.+|.+ .|++++|+  +++|++|+.||+|++||+.++...........  ......  ...+..+..++.+.+|+..
T Consensus       153 ~~~~~h~~-~v~~~~~~--~~~l~s~~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~--~~~l~s~s~dg~i~~wd~~  227 (445)
T 2ovr_B          153 RTLVGHTG-GVWSSQMR--DNIIISGSTDRTLKVWNAETGECIHTLYGHTSTVRCMHLH--EKRVVSGSRDATLRVWDIE  227 (445)
T ss_dssp             EECCCCSS-CEEEEEEE--TTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEE--TTEEEEEETTSEEEEEESS
T ss_pred             EEEcCCCC-CEEEEEec--CCEEEEEeCCCeEEEEECCcCcEEEEECCCCCcEEEEEec--CCEEEEEeCCCEEEEEECC
Confidence            46789999 89999997  67999999999999999988744332221111  000001  1123445668899999999


Q ss_pred             CcCcccccccccCCeEEEEEecCCCcEEEEEcCCCeEEEEEcCCCCcceEEEeeccCCceeEEEeccCCCCeEEEEcCCC
Q 021657           80 SVGPRGIYNGHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADN  159 (309)
Q Consensus        80 ~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg  159 (309)
                      +.+.+..+.+|...|.++.|  ++ .++++|+.||.|++||+++++  ....+.+|...|.+++|   ++.++++++.||
T Consensus       228 ~~~~~~~~~~~~~~v~~~~~--~~-~~l~~~~~dg~i~iwd~~~~~--~~~~~~~~~~~v~~~~~---~~~~l~~~~~d~  299 (445)
T 2ovr_B          228 TGQCLHVLMGHVAAVRCVQY--DG-RRVVSGAYDFMVKVWDPETET--CLHTLQGHTNRVYSLQF---DGIHVVSGSLDT  299 (445)
T ss_dssp             SCCEEEEEECCSSCEEEEEE--CS-SCEEEEETTSCEEEEEGGGTE--EEEEECCCSSCEEEEEE---CSSEEEEEETTS
T ss_pred             CCcEEEEEcCCcccEEEEEE--CC-CEEEEEcCCCEEEEEECCCCc--EeEEecCCCCceEEEEE---CCCEEEEEeCCC
Confidence            99999999999999999999  45 679999999999999998877  67788899999999999   578999999999


Q ss_pred             cEEEEecCCCCCCCCCCceeeeccCCCCeeEEEEecCCCcEEEEecCCCcEEEEeCCcccccccCCCCCcCCCCceeeee
Q 021657          160 SVRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQH  239 (309)
Q Consensus       160 ~i~i~d~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~  239 (309)
                      .|++||+++      ++.+..+.+|...+.++.++  +. ++++|+.||.|++||++.               ...+..+
T Consensus       300 ~i~i~d~~~------~~~~~~~~~~~~~v~~~~~~--~~-~l~~~~~dg~i~vwd~~~---------------~~~~~~~  355 (445)
T 2ovr_B          300 SIRVWDVET------GNCIHTLTGHQSLTSGMELK--DN-ILVSGNADSTVKIWDIKT---------------GQCLQTL  355 (445)
T ss_dssp             CEEEEETTT------CCEEEEECCCCSCEEEEEEE--TT-EEEEEETTSCEEEEETTT---------------CCEEEEE
T ss_pred             eEEEEECCC------CCEEEEEcCCcccEEEEEEe--CC-EEEEEeCCCeEEEEECCC---------------CcEEEEE
Confidence            999999999      88999999999999888875  44 467999999999999987               2334444


Q ss_pred             cC---CCcceeeEEEccCCCeEEEEecCCCCCCCCCCeEEEEEccccccCChhhHhHhh-----hcccceEEEeeeCC
Q 021657          240 AG---HRDKVVDFHWNASDPWTVVSVSDDCDSTGGGGTLQIWRMSDLIYRPQDEVLAEL-----EKFKAHVISCTSKP  309 (309)
Q Consensus       240 ~~---~~~~v~~~~~~~~~~~~~~s~s~d~~s~~~dg~v~vw~~~~~~~~~~~~~~~~~-----~~h~~~v~~~~~~P  309 (309)
                      .+   |...|.+++|++  . ++++++.|       |.|++||+.      +++.+..+     .+|.+.|++++|+|
T Consensus       356 ~~~~~~~~~v~~~~~~~--~-~l~s~~~d-------g~v~iwd~~------~~~~~~~~~~~~~~~~~~~v~~~~~s~  417 (445)
T 2ovr_B          356 QGPNKHQSAVTCLQFNK--N-FVITSSDD-------GTVKLWDLK------TGEFIRNLVTLESGGSGGVVWRIRASN  417 (445)
T ss_dssp             CSTTSCSSCEEEEEECS--S-EEEEEETT-------SEEEEEETT------TCCEEEEEEECTTGGGTCEEEEEEECS
T ss_pred             ccCCCCCCCEEEEEECC--C-EEEEEeCC-------CeEEEEECC------CCceeeeeeccccCCCCceEEEEEecC
Confidence            44   888999999974  3 56655544       999999999      56666666     57889999999987

>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A

Probab=100.00  E-value=1.1e-33  Score=226.50  Aligned_cols=236  Identities=15%  Similarity=0.256  Sum_probs=187.3

Q ss_pred             CCCCcceEEEEECCCCCEEEEecCCCcEEEEeCCcccc--cccc--CC--ccccccCCCCceeecCCCCCCCCcccCCCC
Q 021657            6 GHQDNAEFALAMCPTEPYVLSGGKDKSVVLWSIQDHIT--SSAT--DP--ATAKSAGSSGSIIKQSPKPGDGNDKAADGP   79 (309)
Q Consensus         6 ~H~~~~V~~~~~~~~~~~l~t~~~dg~i~vwd~~~~~~--~~~~--~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   79 (309)
                      +|.. .|++++|+|++++|++++.||.|++||+.++..  ....  ..  ...........  .+..+..++.+.+|+..
T Consensus        95 ~~~~-~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~--~l~~~~~dg~v~~~d~~  171 (337)
T 1gxr_A           95 NRDN-YIRSCKLLPDGCTLIVGGEASTLSIWDLAAPTPRIKAELTSSAPACYALAISPDSK--VCFSCCSDGNIAVWDLH  171 (337)
T ss_dssp             CTTS-BEEEEEECTTSSEEEEEESSSEEEEEECCCC--EEEEEEECSSSCEEEEEECTTSS--EEEEEETTSCEEEEETT
T ss_pred             CCCC-cEEEEEEcCCCCEEEEEcCCCcEEEEECCCCCcceeeecccCCCceEEEEECCCCC--EEEEEeCCCcEEEEeCC
Confidence            6887 899999999999999999999999999987641  1111  11  11111111111  22234457889999999


Q ss_pred             CcCcccccccccCCeEEEEEecCCCcEEEEEcCCCeEEEEEcCCCCcceEEEeeccCCceeEEEeccCCCCeEEEEcCCC
Q 021657           80 SVGPRGIYNGHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADN  159 (309)
Q Consensus        80 ~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg  159 (309)
                      +.+.+..+..|...|.+++|+|++ .+|++++.||.|++||+++++  ....+ .+...+.+++|+| +++++++++.++
T Consensus       172 ~~~~~~~~~~~~~~i~~~~~~~~~-~~l~~~~~dg~i~~~d~~~~~--~~~~~-~~~~~v~~~~~s~-~~~~l~~~~~~~  246 (337)
T 1gxr_A          172 NQTLVRQFQGHTDGASCIDISNDG-TKLWTGGLDNTVRSWDLREGR--QLQQH-DFTSQIFSLGYCP-TGEWLAVGMESS  246 (337)
T ss_dssp             TTEEEEEECCCSSCEEEEEECTTS-SEEEEEETTSEEEEEETTTTE--EEEEE-ECSSCEEEEEECT-TSSEEEEEETTS
T ss_pred             CCceeeeeecccCceEEEEECCCC-CEEEEEecCCcEEEEECCCCc--eEeee-cCCCceEEEEECC-CCCEEEEEcCCC
Confidence            999999999999999999999998 889999999999999998876  34443 5778899999999 999999999999


Q ss_pred             cEEEEecCCCCCCCCCCceeeeccCCCCeeEEEEecCCCcEEEEecCCCcEEEEeCCcccccccCCCCCcCCCCceeeee
Q 021657          160 SVRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQH  239 (309)
Q Consensus       160 ~i~i~d~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~  239 (309)
                      .|++||+++      .+ ...+..|...|.+++|+|++++ +++++.||.|++||++..               ..+ ..
T Consensus       247 ~i~~~~~~~------~~-~~~~~~~~~~v~~~~~~~~~~~-l~~~~~dg~i~~~~~~~~---------------~~~-~~  302 (337)
T 1gxr_A          247 NVEVLHVNK------PD-KYQLHLHESCVLSLKFAYCGKW-FVSTGKDNLLNAWRTPYG---------------ASI-FQ  302 (337)
T ss_dssp             CEEEEETTS------SC-EEEECCCSSCEEEEEECTTSSE-EEEEETTSEEEEEETTTC---------------CEE-EE
T ss_pred             cEEEEECCC------CC-eEEEcCCccceeEEEECCCCCE-EEEecCCCcEEEEECCCC---------------eEE-EE
Confidence            999999997      44 3467788999999999999996 679999999999999872               222 22


Q ss_pred             cCCCcceeeEEEccCCCeEEEEecCCCCCCCCCCeEEEEEcc
Q 021657          240 AGHRDKVVDFHWNASDPWTVVSVSDDCDSTGGGGTLQIWRMS  281 (309)
Q Consensus       240 ~~~~~~v~~~~~~~~~~~~~~s~s~d~~s~~~dg~v~vw~~~  281 (309)
                      ..|...|.+++|+|++.+++        +++.||.|++|++.
T Consensus       303 ~~~~~~v~~~~~s~~~~~l~--------~~~~dg~i~iw~~~  336 (337)
T 1gxr_A          303 SKESSSVLSCDISVDDKYIV--------TGSGDKKATVYEVI  336 (337)
T ss_dssp             EECSSCEEEEEECTTSCEEE--------EEETTSCEEEEEEE
T ss_pred             ecCCCcEEEEEECCCCCEEE--------EecCCCeEEEEEEe
Confidence            45788999999999888655        44455999999974

>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}

Probab=100.00  E-value=1.1e-33  Score=230.07  Aligned_cols=219  Identities=20%  Similarity=0.344  Sum_probs=177.5

Q ss_pred             cccCCCCCcceEEEEECCC--CCEEEEecCCCcEEEEeCCccccccccCCccccccCCCCceeecCCCCCCCCcccCCCC
Q 021657            2 EILTGHQDNAEFALAMCPT--EPYVLSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGP   79 (309)
Q Consensus         2 ~~l~~H~~~~V~~~~~~~~--~~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   79 (309)
                      +.+.+|.+ .|++++|+|+  +++|++|+.||.|++||+.++.                                     
T Consensus        49 ~~~~~h~~-~v~~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~-------------------------------------   90 (379)
T 3jrp_A           49 DTLTGHEG-PVWRVDWAHPKFGTILASCSYDGKVLIWKEENGR-------------------------------------   90 (379)
T ss_dssp             EEECCCSS-CEEEEEECCGGGCSEEEEEETTSCEEEEEEETTE-------------------------------------
T ss_pred             eEecCCCC-cEEEEEeCCCCCCCEEEEeccCCEEEEEEcCCCc-------------------------------------
Confidence            46789998 8999999987  9999999999999999997531                                     


Q ss_pred             CcCcccccccccCCeEEEEEecC--CCcEEEEEcCCCeEEEEEcCCCCcceEEEeeccCCceeEEEeccC----------
Q 021657           80 SVGPRGIYNGHEDTVEDVTFCPS--SAQEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPL----------  147 (309)
Q Consensus        80 ~~~~~~~~~~~~~~v~~~~~~~~--~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~----------  147 (309)
                       ......+..|...|.+++|+|+  + .+|++++.||.|++||++.........+..|...|.+++|+|.          
T Consensus        91 -~~~~~~~~~~~~~v~~~~~~~~~~~-~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~  168 (379)
T 3jrp_A           91 -WSQIAVHAVHSASVNSVQWAPHEYG-PLLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEEDGEHNG  168 (379)
T ss_dssp             -EEEEEEECCCSSCEEEEEECCGGGC-SEEEEEETTSEEEEEECCTTSCCCEEEEECCTTCEEEEEECCCC---------
T ss_pred             -eeEeeeecCCCcceEEEEeCCCCCC-CEEEEecCCCcEEEEecCCCCceeeEEecCCCCceEEEEEcCccccccccccC
Confidence             1134556678999999999998  6 8899999999999999988755456677889999999999994          


Q ss_pred             --CCCeEEEEcCCCcEEEEecCCCCCCCCCCceeeeccCCCCeeEEEEecC---CCcEEEEecCCCcEEEEeCCcccccc
Q 021657          148 --DDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWSPD---KSSVFGSSAEDGLLNIWDYEKVGKKV  222 (309)
Q Consensus       148 --~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~---~~~l~~~~~~dg~i~iwd~~~~~~~~  222 (309)
                        ++.+|++++.||.|++||++.....  ...+..+.+|...|.+++|+|+   +. ++++++.||.|++||++......
T Consensus       169 ~~~~~~l~~~~~dg~i~i~d~~~~~~~--~~~~~~~~~h~~~v~~~~~sp~~~~~~-~l~s~~~dg~i~iwd~~~~~~~~  245 (379)
T 3jrp_A          169 TKESRKFVTGGADNLVKIWKYNSDAQT--YVLESTLEGHSDWVRDVAWSPTVLLRS-YLASVSQDRTCIIWTQDNEQGPW  245 (379)
T ss_dssp             -CTTCEEEEEETTSCEEEEEEETTTTE--EEEEEEECCCSSCEEEEEECCCCSSSE-EEEEEETTSCEEEEEESSTTSCC
T ss_pred             CCCCCEEEEEeCCCeEEEEEecCCCcc--eeeEEEEecccCcEeEEEECCCCCCCC-eEEEEeCCCEEEEEeCCCCCccc
Confidence              4899999999999999999873210  1245677889999999999999   66 57799999999999998732111


Q ss_pred             cCCCCCcCCCCceeeeecCCCcceeeEEEccCCCeEEEEecCCCCCCCCCCeEEEEEcc
Q 021657          223 EQGPRTTNYPAGLFFQHAGHRDKVVDFHWNASDPWTVVSVSDDCDSTGGGGTLQIWRMS  281 (309)
Q Consensus       223 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~s~d~~s~~~dg~v~vw~~~  281 (309)
                                ...+.....|...|.+++|+|++.+++        +++.||.|++|++.
T Consensus       246 ----------~~~~~~~~~~~~~v~~~~~s~~g~~l~--------~~~~dg~i~iw~~~  286 (379)
T 3jrp_A          246 ----------KKTLLKEEKFPDVLWRASWSLSGNVLA--------LSGGDNKVTLWKEN  286 (379)
T ss_dssp             ----------EEEESSSSCCSSCEEEEEECSSSCCEE--------EEESSSSEEEEEEE
T ss_pred             ----------eeeeeccccCCCcEEEEEEcCCCCEEE--------EecCCCcEEEEeCC
Confidence                      122334455888999999999988765        44445999999998

>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A

Probab=100.00  E-value=3.8e-34  Score=230.06  Aligned_cols=235  Identities=18%  Similarity=0.350  Sum_probs=177.3

Q ss_pred             cccCCCCCcceEEEEECC--CCCEEEEecCCCcEEEEeCCccccccccCCccccccCCCCceeecCCCCCCCCcccCCCC
Q 021657            2 EILTGHQDNAEFALAMCP--TEPYVLSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGP   79 (309)
Q Consensus         2 ~~l~~H~~~~V~~~~~~~--~~~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   79 (309)
                      +.+.+|.+ .|++++|+|  ++++|++|+.||.|++||++.+.....                               ..
T Consensus        51 ~~~~~~~~-~v~~~~~~~~~d~~~l~s~~~dg~v~vwd~~~~~~~~~-------------------------------~~   98 (351)
T 3f3f_A           51 DSWRAHDS-SIVAIDWASPEYGRIIASASYDKTVKLWEEDPDQEECS-------------------------------GR   98 (351)
T ss_dssp             EEEECCSS-CEEEEEECCGGGCSEEEEEETTSCEEEEEECTTSCTTS-------------------------------SC
T ss_pred             ceeccCCC-cEEEEEEcCCCCCCEEEEEcCCCeEEEEecCCCccccc-------------------------------cc
Confidence            35678998 899999999  699999999999999999985422110                               01


Q ss_pred             CcCcccccccccCCeEEEEEecC--CCcEEEEEcCCCeEEEEEcCCCCcceEEE-----------eeccCCceeEEEecc
Q 021657           80 SVGPRGIYNGHEDTVEDVTFCPS--SAQEFCSVGDDSCLILWDARVGTSPVIKV-----------EKAHDADLHCVDWNP  146 (309)
Q Consensus        80 ~~~~~~~~~~~~~~v~~~~~~~~--~~~~l~s~~~dg~i~iwd~~~~~~~~~~~-----------~~~~~~~v~~~~~~~  146 (309)
                      ..+.+..+..|...|.+++|+|+  + .+|++++.||.|++||+++++......           ...|...+.+++|+|
T Consensus        99 ~~~~~~~~~~~~~~v~~~~~~~~~~~-~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p  177 (351)
T 3f3f_A           99 RWNKLCTLNDSKGSLYSVKFAPAHLG-LKLACLGNDGILRLYDALEPSDLRSWTLTSEMKVLSIPPANHLQSDFCLSWCP  177 (351)
T ss_dssp             SEEEEEEECCCSSCEEEEEECCGGGC-SEEEEEETTCEEEEEECSSTTCTTCCEEEEEEESCSCCCSSCSCCCEEEEECC
T ss_pred             CcceeeeecccCCceeEEEEcCCCCC-cEEEEecCCCcEEEecCCChHHhccccccccccccccccCCcccceeEEEecc
Confidence            12345667789999999999998  7 889999999999999998776321111           125778999999999


Q ss_pred             CC---CCeEEEEcCCCcEEEEecCCCCCCCCCCceeeeccCCCCeeEEEEecCCC---cEEEEecCCCcEEEEeCCcccc
Q 021657          147 LD---DNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWSPDKS---SVFGSSAEDGLLNIWDYEKVGK  220 (309)
Q Consensus       147 ~~---~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~---~l~~~~~~dg~i~iwd~~~~~~  220 (309)
                       +   +.++++++.++.+.+|+.....    ...+..+.+|...|++++|+|++.   .+|++++.||.|++||++....
T Consensus       178 -~~~~~~~l~~~~~~~~~~~~~~~~~~----~~~~~~~~~h~~~i~~~~~~p~~~~~~~~l~s~~~dg~i~iwd~~~~~~  252 (351)
T 3f3f_A          178 -SRFSPEKLAVSALEQAIIYQRGKDGK----LHVAAKLPGHKSLIRSISWAPSIGRWYQLIATGCKDGRIRIFKITEKLS  252 (351)
T ss_dssp             -CSSSCCEEEEEETTEEEEEEECTTSC----EEEEEECCCCCSCEEEEEECCCSSCSSEEEEEEETTSCEEEEEEEECC-
T ss_pred             -CCCCCcEEEEecCCCcEEEEccCCCc----eeeeeecCCCCcceeEEEECCCCCCcceEEEEEcCCCeEEEEeCCCCcC
Confidence             6   8999999999999888877621    223778888999999999999982   3678999999999999987322


Q ss_pred             cccCCCCC-------------------------------cCCCCceeeeecCCCcceeeEEEccCCCeEEEEecCCCCCC
Q 021657          221 KVEQGPRT-------------------------------TNYPAGLFFQHAGHRDKVVDFHWNASDPWTVVSVSDDCDST  269 (309)
Q Consensus       221 ~~~~~~~~-------------------------------~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~s~d~~s~  269 (309)
                      ........                               .......+..+.+|...|++++|+|++.+++        +|
T Consensus       253 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~--------s~  324 (351)
T 3f3f_A          253 PLASEESLTNSNMFDNSADVDMDAQGRSDSNTEEKAELQSNLQVELLSEHDDHNGEVWSVSWNLTGTILS--------SA  324 (351)
T ss_dssp             --------------------------------------CCSEEEEEEEEECTTSSCEEEEEECSSSCCEE--------EE
T ss_pred             ccccCCcccceeccCCCcccccccccccccccceeeeecccccccEEEEEecccccEEEEEEcCCCCEEE--------Ee
Confidence            11110000                               0011246677889999999999999887655        44


Q ss_pred             CCCCeEEEEEccc
Q 021657          270 GGGGTLQIWRMSD  282 (309)
Q Consensus       270 ~~dg~v~vw~~~~  282 (309)
                      +.||.|++|++..
T Consensus       325 ~~dg~v~iw~~~~  337 (351)
T 3f3f_A          325 GDDGKVRLWKATY  337 (351)
T ss_dssp             ETTSCEEEEEECT
T ss_pred             cCCCcEEEEecCc
Confidence            5559999999983

>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}

Probab=100.00  E-value=1.8e-33  Score=234.12  Aligned_cols=245  Identities=13%  Similarity=0.070  Sum_probs=181.4

Q ss_pred             CCCCCcceEEEEECCCCCEE-EEecCCCcEEEEeCCccccccccCCccccccCCCCceeecCCCCCCCCcccCCCCCcCc
Q 021657            5 TGHQDNAEFALAMCPTEPYV-LSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGP   83 (309)
Q Consensus         5 ~~H~~~~V~~~~~~~~~~~l-~t~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   83 (309)
                      .+|.+ .|++++|+|++++| ++|+.||.|+|||+...                                      +.+.
T Consensus        99 ~~~~~-~v~~~~~s~d~~~l~~~~~~dg~v~iwd~~~~--------------------------------------~~~~  139 (450)
T 2vdu_B           99 PPIYS-YIRNLRLTSDESRLIACADSDKSLLVFDVDKT--------------------------------------SKNV  139 (450)
T ss_dssp             -CCCC-CEEEEEECTTSSEEEEEEGGGTEEEEEEECSS--------------------------------------SSSC
T ss_pred             CccCC-ceEEEEEcCCCCEEEEEECCCCeEEEEECcCC--------------------------------------CCce
Confidence            46776 79999999999996 89999999999998710                                      1122


Q ss_pred             ccccc--cccCCeEEEEEecCCCcEEEEEcCCCeEEEEEcCCCCcc--eEEEeeccCCceeEEEeccCC---CCeEEEEc
Q 021657           84 RGIYN--GHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSP--VIKVEKAHDADLHCVDWNPLD---DNLILTGS  156 (309)
Q Consensus        84 ~~~~~--~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~--~~~~~~~~~~~v~~~~~~~~~---~~~l~~~~  156 (309)
                      +..+.  .|...|++++|+|++ .+|++|+.||.|++|++.+++..  ....+.+|...|++++|+| +   +.+|++++
T Consensus       140 ~~~~~~~~~~~~v~~~~~sp~~-~~l~~~~~~g~v~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp-~~~~~~~l~s~~  217 (450)
T 2vdu_B          140 LKLRKRFCFSKRPNAISIAEDD-TTVIIADKFGDVYSIDINSIPEEKFTQEPILGHVSMLTDVHLIK-DSDGHQFIITSD  217 (450)
T ss_dssp             EEEEEEEECSSCEEEEEECTTS-SEEEEEETTSEEEEEETTSCCCSSCCCCCSEECSSCEEEEEEEE-CTTSCEEEEEEE
T ss_pred             eeeeecccCCCCceEEEEcCCC-CEEEEEeCCCcEEEEecCCcccccccceeeecccCceEEEEEcC-CCCCCcEEEEEc
Confidence            33343  567889999999998 88999999999999999877632  2235678999999999999 8   88999999


Q ss_pred             CCCcEEEEecCCCCCCCCCCceee-eccCCCCeeEEEEecCCCcEEEEecCCCcEEEEeCCcccccccCCCCCc------
Q 021657          157 ADNSVRMFDRRNLTSNGVGSPINK-FEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTT------  229 (309)
Q Consensus       157 ~dg~i~i~d~~~~~~~~~~~~~~~-~~~~~~~v~~~~~~~~~~~l~~~~~~dg~i~iwd~~~~~~~~~~~~~~~------  229 (309)
                      .|+.|++||+++      ++.+.. +.+|...|.+++|+ ++.+ |++++.|+.|++||++.............      
T Consensus       218 ~d~~i~vwd~~~------~~~~~~~~~~h~~~v~~~~~s-d~~~-l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~  289 (450)
T 2vdu_B          218 RDEHIKISHYPQ------CFIVDKWLFGHKHFVSSICCG-KDYL-LLSAGGDDKIFAWDWKTGKNLSTFDYNSLIKPYLN  289 (450)
T ss_dssp             TTSCEEEEEESC------TTCEEEECCCCSSCEEEEEEC-STTE-EEEEESSSEEEEEETTTCCEEEEEECHHHHGGGCC
T ss_pred             CCCcEEEEECCC------CceeeeeecCCCCceEEEEEC-CCCE-EEEEeCCCeEEEEECCCCcEeeeecchhhhhhhhh
Confidence            999999999998      777776 56899999999999 8885 67999999999999987322111000000      


Q ss_pred             --C-CCCc-eeeeecCCCcceeeEEEccCCCeEEEEecCCCCCCCCCCeEEEEEc--cccccCChhhHhHhhhcccceEE
Q 021657          230 --N-YPAG-LFFQHAGHRDKVVDFHWNASDPWTVVSVSDDCDSTGGGGTLQIWRM--SDLIYRPQDEVLAELEKFKAHVI  303 (309)
Q Consensus       230 --~-~~~~-~~~~~~~~~~~v~~~~~~~~~~~~~~s~s~d~~s~~~dg~v~vw~~--~~~~~~~~~~~~~~~~~h~~~v~  303 (309)
                        . .+.. ...........|.+++|+|++.++++++..|       +.|++|++  ...   ...+++..+..| +.|.
T Consensus       290 ~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~~d-------~~i~iw~~~~~~~---~~l~~~~~~~~~-~~v~  358 (450)
T 2vdu_B          290 DQHLAPPRFQNENNDIIEFAVSKIIKSKNLPFVAFFVEAT-------KCIIILEMSEKQK---GDLALKQIITFP-YNVI  358 (450)
T ss_dssp             TTSBC----------CBCCCEEEEEECSSSSEEEEEETTC-------SEEEEEEECSSST---TCEEEEEEEECS-SCEE
T ss_pred             hcccccccccccccccceEEEEEEEEeCCCCEEEEEECCC-------CeEEEEEeccCCC---CceeeccEeccC-CceE
Confidence              0 0000 0000012345789999999998877544344       99999999  310   012566677777 8899


Q ss_pred             EeeeCC
Q 021657          304 SCTSKP  309 (309)
Q Consensus       304 ~~~~~P  309 (309)
                      +++|+|
T Consensus       359 ~~~~~~  364 (450)
T 2vdu_B          359 SLSAHN  364 (450)
T ss_dssp             EEEEET
T ss_pred             EEEecC
Confidence            999987

>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1

Probab=100.00  E-value=4.6e-34  Score=236.73  Aligned_cols=241  Identities=22%  Similarity=0.384  Sum_probs=188.0

Q ss_pred             cccCCCCCcceEEEEECCCCCEEEEecCCCcEEEEeCCccccccccCCc----cccccCCCCceeecCCCCCCCCcccCC
Q 021657            2 EILTGHQDNAEFALAMCPTEPYVLSGGKDKSVVLWSIQDHITSSATDPA----TAKSAGSSGSIIKQSPKPGDGNDKAAD   77 (309)
Q Consensus         2 ~~l~~H~~~~V~~~~~~~~~~~l~t~~~dg~i~vwd~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~   77 (309)
                      +.+.+|.+ .|++++|  ++++|++|+.||+|++||+.++.........    .......    ..+..+..++.+.+|+
T Consensus       167 ~~~~~h~~-~v~~l~~--~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~----~~l~s~s~dg~i~vwd  239 (435)
T 1p22_A          167 RILTGHTG-SVLCLQY--DERVIITGSSDSTVRVWDVNTGEMLNTLIHHCEAVLHLRFNN----GMMVTCSKDRSIAVWD  239 (435)
T ss_dssp             EEECCCSS-CEEEEEC--CSSEEEEEETTSCEEEEESSSCCEEEEECCCCSCEEEEECCT----TEEEEEETTSCEEEEE
T ss_pred             EEEcCCCC-cEEEEEE--CCCEEEEEcCCCeEEEEECCCCcEEEEEcCCCCcEEEEEEcC----CEEEEeeCCCcEEEEe
Confidence            46789998 8999998  7889999999999999999887443322211    1111111    1334455688999999


Q ss_pred             CCCcCcc---cccccccCCeEEEEEecCCCcEEEEEcCCCeEEEEEcCCCCcceEEEeeccCCceeEEEeccCCCCeEEE
Q 021657           78 GPSVGPR---GIYNGHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILT  154 (309)
Q Consensus        78 ~~~~~~~---~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~  154 (309)
                      ..+....   ..+.+|...|.+++|  ++ .++++|+.||.|++||+++++  ....+.+|...|.+++++   +.++++
T Consensus       240 ~~~~~~~~~~~~~~~~~~~v~~~~~--~~-~~l~s~~~dg~i~vwd~~~~~--~~~~~~~~~~~v~~~~~~---~~~l~~  311 (435)
T 1p22_A          240 MASPTDITLRRVLVGHRAAVNVVDF--DD-KYIVSASGDRTIKVWNTSTCE--FVRTLNGHKRGIACLQYR---DRLVVS  311 (435)
T ss_dssp             CSSSSCCEEEEEECCCSSCEEEEEE--ET-TEEEEEETTSEEEEEETTTCC--EEEEEECCSSCEEEEEEE---TTEEEE
T ss_pred             CCCCCCceeeeEecCCCCcEEEEEe--CC-CEEEEEeCCCeEEEEECCcCc--EEEEEcCCCCcEEEEEeC---CCEEEE
Confidence            9887765   677899999999999  44 689999999999999999887  778888999999999984   579999


Q ss_pred             EcCCCcEEEEecCCCCCCCCCCceeeeccCCCCeeEEEEecCCCcEEEEecCCCcEEEEeCCcccccccCCCCCcCCCCc
Q 021657          155 GSADNSVRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAG  234 (309)
Q Consensus       155 ~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~  234 (309)
                      |+.||.|++||+++      ++.+..+.+|...|.+++|  ++.+ +++|+.||.|++||++........      ....
T Consensus       312 g~~dg~i~iwd~~~------~~~~~~~~~h~~~v~~~~~--~~~~-l~sg~~dg~i~vwd~~~~~~~~~~------~~~~  376 (435)
T 1p22_A          312 GSSDNTIRLWDIEC------GACLRVLEGHEELVRCIRF--DNKR-IVSGAYDGKIKVWDLVAALDPRAP------AGTL  376 (435)
T ss_dssp             EETTSCEEEEETTT------CCEEEEECCCSSCEEEEEC--CSSE-EEEEETTSCEEEEEHHHHTSTTSC------TTTT
T ss_pred             EeCCCeEEEEECCC------CCEEEEEeCCcCcEEEEEe--cCCE-EEEEeCCCcEEEEECCCCCCcccc------ccch
Confidence            99999999999999      8899999999999999999  5664 679999999999999873322110      1122


Q ss_pred             eeeeecCCCcceeeEEEccCCCeEEEEecCCCCCCCCCCeEEEEEccc
Q 021657          235 LFFQHAGHRDKVVDFHWNASDPWTVVSVSDDCDSTGGGGTLQIWRMSD  282 (309)
Q Consensus       235 ~~~~~~~~~~~v~~~~~~~~~~~~~~s~s~d~~s~~~dg~v~vw~~~~  282 (309)
                      .+..+.+|...|.+++|  ++..+ +       +|+.||.|++||+.+
T Consensus       377 ~~~~~~~h~~~v~~l~~--~~~~l-~-------s~s~Dg~i~iwd~~~  414 (435)
T 1p22_A          377 CLRTLVEHSGRVFRLQF--DEFQI-V-------SSSHDDTILIWDFLN  414 (435)
T ss_dssp             EEEEECCCSSCCCCEEE--CSSCE-E-------ECCSSSEEEEEC---
T ss_pred             heeeccCCCCCeEEEEe--CCCEE-E-------EEeCCCEEEEEECCC
Confidence            56778899999999999  35554 4       555669999999983

>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*

Probab=100.00  E-value=1.7e-33  Score=234.12  Aligned_cols=258  Identities=21%  Similarity=0.323  Sum_probs=205.7

Q ss_pred             cccCCCCCcceEEEEECCCCCEEEEecCCCcEEEEeCCccccccccCCccccccCCCCceeecCCCCCCCCcccCCCCCc
Q 021657            2 EILTGHQDNAEFALAMCPTEPYVLSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSV   81 (309)
Q Consensus         2 ~~l~~H~~~~V~~~~~~~~~~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (309)
                      +.|++|.+..++++.+  ++++|++|+.||+|++||+.++......................+..+..++.+.+|+..+.
T Consensus       112 ~~l~~h~~~v~~~~~~--~g~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~l~s~~~dg~i~vwd~~~~  189 (445)
T 2ovr_B          112 KVLKGHDDHVITCLQF--CGNRIVSGSDDNTLKVWSAVTGKCLRTLVGHTGGVWSSQMRDNIIISGSTDRTLKVWNAETG  189 (445)
T ss_dssp             EEEECSTTSCEEEEEE--ETTEEEEEETTSCEEEEETTTCCEEEECCCCSSCEEEEEEETTEEEEEETTSCEEEEETTTT
T ss_pred             EEecccCCCcEEEEEE--cCCEEEEEECCCcEEEEECCCCcEEEEEcCCCCCEEEEEecCCEEEEEeCCCeEEEEECCcC
Confidence            4688999955666555  68999999999999999998775443332111100000000113444567889999999999


Q ss_pred             CcccccccccCCeEEEEEecCCCcEEEEEcCCCeEEEEEcCCCCcceEEEeeccCCceeEEEeccCCCCeEEEEcCCCcE
Q 021657           82 GPRGIYNGHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSV  161 (309)
Q Consensus        82 ~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i  161 (309)
                      +.+..+.+|...|.++.|++   ..+++|+.||.|++||+.+++  ....+.+|...|.+++|   ++.++++|+.||.|
T Consensus       190 ~~~~~~~~h~~~v~~~~~~~---~~l~s~s~dg~i~~wd~~~~~--~~~~~~~~~~~v~~~~~---~~~~l~~~~~dg~i  261 (445)
T 2ovr_B          190 ECIHTLYGHTSTVRCMHLHE---KRVVSGSRDATLRVWDIETGQ--CLHVLMGHVAAVRCVQY---DGRRVVSGAYDFMV  261 (445)
T ss_dssp             EEEEEECCCSSCEEEEEEET---TEEEEEETTSEEEEEESSSCC--EEEEEECCSSCEEEEEE---CSSCEEEEETTSCE
T ss_pred             cEEEEECCCCCcEEEEEecC---CEEEEEeCCCEEEEEECCCCc--EEEEEcCCcccEEEEEE---CCCEEEEEcCCCEE
Confidence            99999999999999999964   569999999999999999887  67788899999999999   57899999999999


Q ss_pred             EEEecCCCCCCCCCCceeeeccCCCCeeEEEEecCCCcEEEEecCCCcEEEEeCCcccccccCCCCCcCCCCceeeeecC
Q 021657          162 RMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAG  241 (309)
Q Consensus       162 ~i~d~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~  241 (309)
                      ++||+++      ++.+..+.+|...|.+++|  ++.+ +++++.|+.|++||++.               ...+..+.+
T Consensus       262 ~iwd~~~------~~~~~~~~~~~~~v~~~~~--~~~~-l~~~~~d~~i~i~d~~~---------------~~~~~~~~~  317 (445)
T 2ovr_B          262 KVWDPET------ETCLHTLQGHTNRVYSLQF--DGIH-VVSGSLDTSIRVWDVET---------------GNCIHTLTG  317 (445)
T ss_dssp             EEEEGGG------TEEEEEECCCSSCEEEEEE--CSSE-EEEEETTSCEEEEETTT---------------CCEEEEECC
T ss_pred             EEEECCC------CcEeEEecCCCCceEEEEE--CCCE-EEEEeCCCeEEEEECCC---------------CCEEEEEcC
Confidence            9999998      8899999999999999999  6665 67999999999999987               445667788


Q ss_pred             CCcceeeEEEccCCCeEEEEecCCCCCCCCCCeEEEEEccccccCChhhHhHhhhc---ccceEEEeeeCC
Q 021657          242 HRDKVVDFHWNASDPWTVVSVSDDCDSTGGGGTLQIWRMSDLIYRPQDEVLAELEK---FKAHVISCTSKP  309 (309)
Q Consensus       242 ~~~~v~~~~~~~~~~~~~~s~s~d~~s~~~dg~v~vw~~~~~~~~~~~~~~~~~~~---h~~~v~~~~~~P  309 (309)
                      |...+.++.+++  . ++++++.       ||.|++||+.      +++++..+..   |...|.+++|+|
T Consensus       318 ~~~~v~~~~~~~--~-~l~~~~~-------dg~i~vwd~~------~~~~~~~~~~~~~~~~~v~~~~~~~  372 (445)
T 2ovr_B          318 HQSLTSGMELKD--N-ILVSGNA-------DSTVKIWDIK------TGQCLQTLQGPNKHQSAVTCLQFNK  372 (445)
T ss_dssp             CCSCEEEEEEET--T-EEEEEET-------TSCEEEEETT------TCCEEEEECSTTSCSSCEEEEEECS
T ss_pred             CcccEEEEEEeC--C-EEEEEeC-------CCeEEEEECC------CCcEEEEEccCCCCCCCEEEEEECC
Confidence            999999988864  4 4554444       4999999998      5666777765   888999999875

>4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A

Probab=100.00  E-value=1e-34  Score=237.26  Aligned_cols=247  Identities=15%  Similarity=0.145  Sum_probs=164.8

Q ss_pred             ceEEEEECCCCCEEEEecCCCcEEEEeCCccccccccCCccccccCCCCceeecCCCCCCCCcccCCCCCcCcccccccc
Q 021657           11 AEFALAMCPTEPYVLSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGH   90 (309)
Q Consensus        11 ~V~~~~~~~~~~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   90 (309)
                      .+....+++++.+|++|+.|++|+|||++.+...                                   ....+..+.+|
T Consensus        91 ~~~~~~~~~~~~~las~~~d~~v~lw~~~~~~~~-----------------------------------~~~~~~~~~gH  135 (393)
T 4gq1_A           91 DGNVNSSPVYSLFLACVCQDNTVRLIITKNETII-----------------------------------TQHVLGGKSGH  135 (393)
T ss_dssp             ------CCEEEEEEEEEETTSCEEEEEEETTEEE-----------------------------------EEEEECTTTSC
T ss_pred             CcceeecCCCCCEEEEEeCCCcEEEEECCCCccc-----------------------------------eeeeecccCCC
Confidence            3444455556778999999999999998754221                                   11224567899


Q ss_pred             cCCeEEEEEec--------CCCcEEEEEcCCCeEEEEEcCCCCcceEEEeeccCCceeEEEeccCCCCeEEEEcCCCcEE
Q 021657           91 EDTVEDVTFCP--------SSAQEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVR  162 (309)
Q Consensus        91 ~~~v~~~~~~~--------~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~  162 (309)
                      .+.|++++|+|        ++ ++|++|+.|++|+|||++++.  .......|...+.+++|+|.+..+|++++.|++|+
T Consensus       136 ~~~v~~v~~~p~~~~~~~~d~-~~las~s~D~tv~~Wd~~~~~--~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~d~~v~  212 (393)
T 4gq1_A          136 HNFVNDIDIADVYSADNRLAE-QVIASVGDDCTLIIWRLTDEG--PILAGYPLSSPGISVQFRPSNPNQLIVGERNGNIR  212 (393)
T ss_dssp             SSCEEEEEEEEEECTTCSEEE-EEEEEEETTSEEEEEEEETTE--EEEEEEECSSCEEEEEEETTEEEEEEEEETTSEEE
T ss_pred             CCceEEEEEccccccccCCCC-CEEEEEECCCeEEEEECCCCc--eeeeecCCCCCcEEEEECCCCCceEEecCCCCEEE
Confidence            99999999998        56 899999999999999998776  56666788999999999993346899999999999


Q ss_pred             EEecCCCCCCCCC-------------------CceeeeccCCCCeeEEEEe-cCCCcEEEEecCCCcEEEEeCCcccccc
Q 021657          163 MFDRRNLTSNGVG-------------------SPINKFEGHSAAVLCVQWS-PDKSSVFGSSAEDGLLNIWDYEKVGKKV  222 (309)
Q Consensus       163 i~d~~~~~~~~~~-------------------~~~~~~~~~~~~v~~~~~~-~~~~~l~~~~~~dg~i~iwd~~~~~~~~  222 (309)
                      +||+++.+.....                   .......+|...+.++.|+ |++.. +++++.|+.+++||+.......
T Consensus       213 ~wd~~t~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~v~~v~~~~~dg~~-l~s~s~d~~i~vwd~~~~~~~~  291 (393)
T 4gq1_A          213 IFDWTLNLSAEENSQTELVKNPWLLTLNTLPLVNTCHSSGIASSLANVRWIGSDGSG-ILAMCKSGAWLRWNLFANNDYN  291 (393)
T ss_dssp             EEETTCCC----------CSCCCSEEEESGGGC------CCSSSCSEEEEETTTTCE-EEEECTTSEEEEEEC-------
T ss_pred             EEECCCCcccccccccCCcccceEEecccccceeeeecccccccceeeeeecCCCCE-EEEEeCCCCEEEEECccCCCCc
Confidence            9999874321000                   0001123567788999987 78885 5699999999999998632221


Q ss_pred             cCCCCCcC----CCCceeeeecCCCcceeeEEEccCCCeEEEEecCCCCCCCCCCeEEEEEccccccCChhhHhHhhhcc
Q 021657          223 EQGPRTTN----YPAGLFFQHAGHRDKVVDFHWNASDPWTVVSVSDDCDSTGGGGTLQIWRMSDLIYRPQDEVLAELEKF  298 (309)
Q Consensus       223 ~~~~~~~~----~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~s~d~~s~~~dg~v~vw~~~~~~~~~~~~~~~~~~~h  298 (309)
                      ........    ...........+...+..+.+.+.+..++++++.|       |.|++||+.      +++++..+.+|
T Consensus       292 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sgs~D-------g~V~lwd~~------~~~~~~~~~~~  358 (393)
T 4gq1_A          292 EISDSTMKLGPKNLLPNVQGISLFPSLLGACPHPRYMDYFATAHSQH-------GLIQLINTY------EKDSNSIPIQL  358 (393)
T ss_dssp             ------------CCSCSEEEECSSCCSSCCEECSSCTTEEEEEETTT-------TEEEEEETT------CTTCCEEEEEC
T ss_pred             eEeeecCccccEEEccccccccccCcceeEEEccCCCCEEEEEECCC-------CEEEEEECC------CCcEEEEecCC
Confidence            11100000    00001112222333334444444556677766655       999999998      67777778889


Q ss_pred             cceEEEeeeCC
Q 021657          299 KAHVISCTSKP  309 (309)
Q Consensus       299 ~~~v~~~~~~P  309 (309)
                      ..+|.+++|+|
T Consensus       359 ~~~V~svafsp  369 (393)
T 4gq1_A          359 GMPIVDFCWHQ  369 (393)
T ss_dssp             SSCEEEEEECT
T ss_pred             CCcEEEEEEcC
Confidence            99999999998

>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1

Probab=100.00  E-value=4.1e-34  Score=237.07  Aligned_cols=258  Identities=17%  Similarity=0.300  Sum_probs=201.0

Q ss_pred             CCCCcceEEEEECCCCCEEEEecCCCcEEEEeCCccccccccCCcc--ccccCCCCceeecCCCCCCCCcccCCCCCcCc
Q 021657            6 GHQDNAEFALAMCPTEPYVLSGGKDKSVVLWSIQDHITSSATDPAT--AKSAGSSGSIIKQSPKPGDGNDKAADGPSVGP   83 (309)
Q Consensus         6 ~H~~~~V~~~~~~~~~~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   83 (309)
                      +|.. .|+++++  ++++|++|+.||.|++||+.++..........  ......  ....+..+..++.+.+|+..+.+.
T Consensus       131 ~~~~-~v~~~~~--d~~~l~~g~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~--~~~~l~sg~~dg~i~vwd~~~~~~  205 (435)
T 1p22_A          131 ETSK-GVYCLQY--DDQKIVSGLRDNTIKIWDKNTLECKRILTGHTGSVLCLQY--DERVIITGSSDSTVRVWDVNTGEM  205 (435)
T ss_dssp             SSCC-CEEEEEC--CSSEEEEEESSSCEEEEESSSCCEEEEECCCSSCEEEEEC--CSSEEEEEETTSCEEEEESSSCCE
T ss_pred             CCCC-cEEEEEE--CCCEEEEEeCCCeEEEEeCCCCeEEEEEcCCCCcEEEEEE--CCCEEEEEcCCCeEEEEECCCCcE
Confidence            4555 6888877  78999999999999999998764433222111  111111  112334456789999999999999


Q ss_pred             ccccccccCCeEEEEEecCCCcEEEEEcCCCeEEEEEcCCCCcc-eEEEeeccCCceeEEEeccCCCCeEEEEcCCCcEE
Q 021657           84 RGIYNGHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSP-VIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVR  162 (309)
Q Consensus        84 ~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~-~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~  162 (309)
                      +..+.+|...|.+++|++   ..+++|+.||.|++||+.++... ....+.+|...|.+++|   +++++++|+.||.|+
T Consensus       206 ~~~~~~h~~~v~~l~~~~---~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~---~~~~l~s~~~dg~i~  279 (435)
T 1p22_A          206 LNTLIHHCEAVLHLRFNN---GMMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDF---DDKYIVSASGDRTIK  279 (435)
T ss_dssp             EEEECCCCSCEEEEECCT---TEEEEEETTSCEEEEECSSSSCCEEEEEECCCSSCEEEEEE---ETTEEEEEETTSEEE
T ss_pred             EEEEcCCCCcEEEEEEcC---CEEEEeeCCCcEEEEeCCCCCCceeeeEecCCCCcEEEEEe---CCCEEEEEeCCCeEE
Confidence            999999999999999964   47999999999999999877632 22567789999999999   568999999999999


Q ss_pred             EEecCCCCCCCCCCceeeeccCCCCeeEEEEecCCCcEEEEecCCCcEEEEeCCcccccccCCCCCcCCCCceeeeecCC
Q 021657          163 MFDRRNLTSNGVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGH  242 (309)
Q Consensus       163 i~d~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~  242 (309)
                      +||+++      ++.+..+.+|...|.+++++  +. ++++|+.||.|++||+++               ...+..+.+|
T Consensus       280 vwd~~~------~~~~~~~~~~~~~v~~~~~~--~~-~l~~g~~dg~i~iwd~~~---------------~~~~~~~~~h  335 (435)
T 1p22_A          280 VWNTST------CEFVRTLNGHKRGIACLQYR--DR-LVVSGSSDNTIRLWDIEC---------------GACLRVLEGH  335 (435)
T ss_dssp             EEETTT------CCEEEEEECCSSCEEEEEEE--TT-EEEEEETTSCEEEEETTT---------------CCEEEEECCC
T ss_pred             EEECCc------CcEEEEEcCCCCcEEEEEeC--CC-EEEEEeCCCeEEEEECCC---------------CCEEEEEeCC
Confidence            999999      88999999999999999995  44 567999999999999987               4456778899


Q ss_pred             CcceeeEEEccCCCeEEEEecCCCCCCCCCCeEEEEEccccccC---ChhhHhHhhhcccceEEEeeeC
Q 021657          243 RDKVVDFHWNASDPWTVVSVSDDCDSTGGGGTLQIWRMSDLIYR---PQDEVLAELEKFKAHVISCTSK  308 (309)
Q Consensus       243 ~~~v~~~~~~~~~~~~~~s~s~d~~s~~~dg~v~vw~~~~~~~~---~~~~~~~~~~~h~~~v~~~~~~  308 (309)
                      ...|.+++|+  +.. +++++.       ||.|++||+......   ....++..+.+|.+.|.+++|.
T Consensus       336 ~~~v~~~~~~--~~~-l~sg~~-------dg~i~vwd~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~  394 (435)
T 1p22_A          336 EELVRCIRFD--NKR-IVSGAY-------DGKIKVWDLVAALDPRAPAGTLCLRTLVEHSGRVFRLQFD  394 (435)
T ss_dssp             SSCEEEEECC--SSE-EEEEET-------TSCEEEEEHHHHTSTTSCTTTTEEEEECCCSSCCCCEEEC
T ss_pred             cCcEEEEEec--CCE-EEEEeC-------CCcEEEEECCCCCCccccccchheeeccCCCCCeEEEEeC
Confidence            9999999993  444 554444       499999999832100   0011677788999999998874

>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}

Probab=100.00  E-value=1.5e-33  Score=232.10  Aligned_cols=241  Identities=12%  Similarity=0.106  Sum_probs=172.6

Q ss_pred             ceEEEEECCCCCEEEEecCCCcEEEEeCCccccccccCCccccccCCCCceeecCCCCCCCCcccCCCCCcCcccccc-c
Q 021657           11 AEFALAMCPTEPYVLSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYN-G   89 (309)
Q Consensus        11 ~V~~~~~~~~~~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~   89 (309)
                      -|.+++|+|||+++||++.|++|+  |.+.+... ..      .......+...+.+    ....|+..+.+....+. .
T Consensus        17 ~v~sv~~SpDG~~iASas~D~TV~--d~~~~~~l-~g------h~~~v~~V~FsPdg----~~~~~~~~~~~~~~~~~~~   83 (588)
T 2j04_A           17 WKNNLTWARDGTLYLTTFPDISIG--QPKYAKDI-NC------NSKNLFHVKEFPLE----FENKLDFELAQQNGLLNSQ   83 (588)
T ss_dssp             SSCCEEECTTSCEEEECSSSEEEE--EECCCSCC-SS------BGGGTEEEEEECCC----CCCTTTTSCCCSSCSSTTS
T ss_pred             cEEEEEECCCCCEEEEEcCCceee--ccccccee-cC------CCccEEEEEECCCC----CcceEEEEeCCCceEeecC
Confidence            588999999999999999999999  64433211 00      11111122222222    34444444333322332 4


Q ss_pred             ccCCeEEEEEecCCCcEEEEEcCCCeEEEEEcCCCCcceEEEeeccCC-----ceeEEEeccCCCCeEEEEcCCCcEEEE
Q 021657           90 HEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPVIKVEKAHDA-----DLHCVDWNPLDDNLILTGSADNSVRMF  164 (309)
Q Consensus        90 ~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~-----~v~~~~~~~~~~~~l~~~~~dg~i~i~  164 (309)
                      |...|.+++|+|+| ..||+++.||.|++||...    ....+. |..     .+.+++|+| ++++|++|+.||+|++|
T Consensus        84 ~~~~V~~vawSPdG-~~LAs~s~dg~V~iwd~~~----~l~~l~-~~~~~~~~sv~svafSP-DG~~LAsgs~DGtVkIW  156 (588)
T 2j04_A           84 PVCYPRVCKPSPID-DWMAVLSNNGNVSVFKDNK----MLTNLD-SKGNLSSRTYHCFEWNP-IESSIVVGNEDGELQFF  156 (588)
T ss_dssp             CSCCEEEEEECSSS-SCEEEEETTSCEEEEETTE----EEEECC-CSSCSTTTCEEEEEECS-SSSCEEEEETTSEEEEE
T ss_pred             CCCcEEEEEECCCC-CEEEEEeCCCcEEEEeCCc----eeeecc-CCCccccccEEEEEEcC-CCCEEEEEcCCCEEEEE
Confidence            58899999999999 8899999999999999533    344455 554     599999999 99999999999999999


Q ss_pred             ecCCCCCCCCCC-------ceeee----ccCCCCeeEEEEecCCCcEEEEecCCCcEEEEeCCcccccccCCCCCcCCCC
Q 021657          165 DRRNLTSNGVGS-------PINKF----EGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPA  233 (309)
Q Consensus       165 d~~~~~~~~~~~-------~~~~~----~~~~~~v~~~~~~~~~~~l~~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~  233 (309)
                      |+..      +.       .+.++    .+|...|.+++|+|+|  + ++++.|+.|++||+.....            .
T Consensus       157 d~~~------~~l~~~~~i~l~ti~~~~~gh~~~V~sVawSPdg--L-aass~D~tVrlWd~~~~~~------------~  215 (588)
T 2j04_A          157 SIRK------NSENTPEFYFESSIRLSDAGSKDWVTHIVWYEDV--L-VAALSNNSVFSMTVSASSH------------Q  215 (588)
T ss_dssp             ECCC------CTTTCCCCEEEEEEECSCTTCCCCEEEEEEETTE--E-EEEETTCCEEEECCCSSSS------------C
T ss_pred             ECCC------CccccccceeeeeeecccccccccEEEEEEcCCc--E-EEEeCCCeEEEEECCCCcc------------c
Confidence            9987      43       25665    6677899999999999  4 5777899999999987221            0


Q ss_pred             ceeeee-cCCCcceeeEEEccCCCeEEEEecCCCCCCCCCCeEEEEEccccccCChhhHhHhhhcccceEEEeee--CC
Q 021657          234 GLFFQH-AGHRDKVVDFHWNASDPWTVVSVSDDCDSTGGGGTLQIWRMSDLIYRPQDEVLAELEKFKAHVISCTS--KP  309 (309)
Q Consensus       234 ~~~~~~-~~~~~~v~~~~~~~~~~~~~~s~s~d~~s~~~dg~v~vw~~~~~~~~~~~~~~~~~~~h~~~v~~~~~--~P  309 (309)
                      .....+ .+|...|.+++|+  +.. +|+++        |++|++||+.      .++......+|.+.|.+++|  +|
T Consensus       216 ~~~~tL~~~h~~~V~svaFs--g~~-LASa~--------~~tIkLWd~~------~~~~~~~~~gh~~~V~~va~~~s~  277 (588)
T 2j04_A          216 PVSRMIQNASRRKITDLKIV--DYK-VVLTC--------PGYVHKIDLK------NYSISSLKTGSLENFHIIPLNHEK  277 (588)
T ss_dssp             CCEEEEECCCSSCCCCEEEE--TTE-EEEEC--------SSEEEEEETT------TTEEEEEECSCCSCCCEEEETTCS
T ss_pred             cceeeecccccCcEEEEEEE--CCE-EEEEe--------CCeEEEEECC------CCeEEEEEcCCCceEEEEEeeeCC
Confidence            112334 4788999999999  555 44333        3899999998      44442223379999999998  65

>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}

Probab=100.00  E-value=2e-33  Score=222.76  Aligned_cols=236  Identities=18%  Similarity=0.212  Sum_probs=187.3

Q ss_pred             cccCCCCCcceEEEEECCCCCEEEEecCCCcEEEEeCCccccccc---c--CC--ccccccCCCCceeecCCCCCCCCcc
Q 021657            2 EILTGHQDNAEFALAMCPTEPYVLSGGKDKSVVLWSIQDHITSSA---T--DP--ATAKSAGSSGSIIKQSPKPGDGNDK   74 (309)
Q Consensus         2 ~~l~~H~~~~V~~~~~~~~~~~l~t~~~dg~i~vwd~~~~~~~~~---~--~~--~~~~~~~~~~~~~~~~~~~~~~~~~   74 (309)
                      +.+.+|.+ .|.+++|+|++++|++++.||.|++|++........   .  ..  ......  .  ...+..+..++.+.
T Consensus        53 ~~~~~~~~-~v~~~~~~~~~~~l~~~~~dg~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~--~--~~~l~~~~~d~~i~  127 (313)
T 3odt_A           53 TVVYTGQG-FLNSVCYDSEKELLLFGGKDTMINGVPLFATSGEDPLYTLIGHQGNVCSLSF--Q--DGVVISGSWDKTAK  127 (313)
T ss_dssp             EEEEECSS-CEEEEEEETTTTEEEEEETTSCEEEEETTCCTTSCC-CEECCCSSCEEEEEE--E--TTEEEEEETTSEEE
T ss_pred             EEeecCCc-cEEEEEECCCCCEEEEecCCCeEEEEEeeecCCCCcccchhhcccCEEEEEe--c--CCEEEEEeCCCCEE
Confidence            34667887 899999999999999999999999999876421111   0  00  011111  1  11233345678889


Q ss_pred             cCCCCCcCcccccccccCCeEEEEEecCCCcEEEEEcCCCeEEEEEcCCCCcceEEEeec-cCCceeEEEeccCCCCeEE
Q 021657           75 AADGPSVGPRGIYNGHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPVIKVEKA-HDADLHCVDWNPLDDNLIL  153 (309)
Q Consensus        75 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~-~~~~v~~~~~~~~~~~~l~  153 (309)
                      +|+  ..+....+..|...+.++.|.|....++++++.||.|++||.  .+  ....+.. |...+.+++|+| ++. ++
T Consensus       128 ~~d--~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~i~d~--~~--~~~~~~~~~~~~i~~~~~~~-~~~-~~  199 (313)
T 3odt_A          128 VWK--EGSLVYNLQAHNASVWDAKVVSFSENKFLTASADKTIKLWQN--DK--VIKTFSGIHNDVVRHLAVVD-DGH-FI  199 (313)
T ss_dssp             EEE--TTEEEEEEECCSSCEEEEEEEETTTTEEEEEETTSCEEEEET--TE--EEEEECSSCSSCEEEEEEEE-TTE-EE
T ss_pred             EEc--CCcEEEecccCCCceeEEEEccCCCCEEEEEECCCCEEEEec--Cc--eEEEEeccCcccEEEEEEcC-CCe-EE
Confidence            998  666777888999999999999933388999999999999993  22  3445555 889999999999 777 99


Q ss_pred             EEcCCCcEEEEecCCCCCCCCCCceeeeccCCCCeeEEEEecCCCcEEEEecCCCcEEEEeCCcccccccCCCCCcCCCC
Q 021657          154 TGSADNSVRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPA  233 (309)
Q Consensus       154 ~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~  233 (309)
                      +++.||.|++||+++      ++.+..+..|...|++++|+|++.  +++++.||.|++||++.               .
T Consensus       200 ~~~~dg~i~i~d~~~------~~~~~~~~~~~~~i~~~~~~~~~~--l~~~~~dg~v~iwd~~~---------------~  256 (313)
T 3odt_A          200 SCSNDGLIKLVDMHT------GDVLRTYEGHESFVYCIKLLPNGD--IVSCGEDRTVRIWSKEN---------------G  256 (313)
T ss_dssp             EEETTSEEEEEETTT------CCEEEEEECCSSCEEEEEECTTSC--EEEEETTSEEEEECTTT---------------C
T ss_pred             EccCCCeEEEEECCc------hhhhhhhhcCCceEEEEEEecCCC--EEEEecCCEEEEEECCC---------------C
Confidence            999999999999998      889999999999999999999994  56899999999999987               3


Q ss_pred             ceeeeecCCCcceeeEEEccCCCeEEEEecCCCCCCCCCCeEEEEEccc
Q 021657          234 GLFFQHAGHRDKVVDFHWNASDPWTVVSVSDDCDSTGGGGTLQIWRMSD  282 (309)
Q Consensus       234 ~~~~~~~~~~~~v~~~~~~~~~~~~~~s~s~d~~s~~~dg~v~vw~~~~  282 (309)
                      .....+..|...|.+++|+|++. ++ +++.|       |.|++||+..
T Consensus       257 ~~~~~~~~~~~~i~~~~~~~~~~-~~-~~~~d-------g~i~iw~~~~  296 (313)
T 3odt_A          257 SLKQVITLPAISIWSVDCMSNGD-II-VGSSD-------NLVRIFSQEK  296 (313)
T ss_dssp             CEEEEEECSSSCEEEEEECTTSC-EE-EEETT-------SCEEEEESCG
T ss_pred             ceeEEEeccCceEEEEEEccCCC-EE-EEeCC-------CcEEEEeCCC
Confidence            45667788999999999999887 44 34444       9999999983

>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*

Probab=100.00  E-value=6.5e-35  Score=270.40  Aligned_cols=263  Identities=19%  Similarity=0.297  Sum_probs=209.4

Q ss_pred             cccCCCCCcceEEEEECCCCCEEEEecCCCcEEEEeCCccccccccCC--------------------------------
Q 021657            2 EILTGHQDNAEFALAMCPTEPYVLSGGKDKSVVLWSIQDHITSSATDP--------------------------------   49 (309)
Q Consensus         2 ~~l~~H~~~~V~~~~~~~~~~~l~t~~~dg~i~vwd~~~~~~~~~~~~--------------------------------   49 (309)
                      ..+.+|.+ .|++++|+|++++|++++.||.|++|++.+.........                                
T Consensus       876 ~~~~~h~~-~v~~v~~spdg~~l~s~s~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  954 (1249)
T 3sfz_A          876 ADCRGHLS-WVHGVMFSPDGSSFLTASDDQTIRVWETKKVCKNSAIVLKQEIDVVFQENETMVLAVDNIRGLQLIAGKTG  954 (1249)
T ss_dssp             EEECCCSS-CEEEEEECTTSSEEEEEETTSCEEEEEHHHHHSCCSSSEEEEEEEEEETTEEEEEEEESSSSEEEEEESSC
T ss_pred             eecCCCcc-ceEEEEECCCCCEEEEEeCCCeEEEEEccccceeeeecccceeeEEEcCCCcEEEEecCCcceEEEecCcc
Confidence            45789998 899999999999999999999999999764311100000                                


Q ss_pred             ---------ccccccCCCCceeecCCCCCCCCcccCCCCCcCcccccccccCCeEEEEEecCCCcEEEEEcCCCeEEEEE
Q 021657           50 ---------ATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQEFCSVGDDSCLILWD  120 (309)
Q Consensus        50 ---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd  120 (309)
                               ..........  ..+..+..++.+.+|+..+.+....+.+|...|++++|+|++ .+|++++.||.|++||
T Consensus       955 ~~~~~~~~~i~~~~~sp~g--~~l~~g~~~g~i~i~d~~~~~~~~~~~~h~~~v~~l~~s~dg-~~l~s~~~dg~i~vwd 1031 (1249)
T 3sfz_A          955 QIDYLPEAQVSCCCLSPHL--EYVAFGDEDGAIKIIELPNNRVFSSGVGHKKAVRHIQFTADG-KTLISSSEDSVIQVWN 1031 (1249)
T ss_dssp             CEEEECCSCEEEEEECTTS--SEEEEEETTSCCEEEETTTTSCEEECCCCSSCCCCEEECSSS-SCEEEECSSSBEEEEE
T ss_pred             eEEEcccCcEEEEEEcCCC--CEEEEEcCCCCEEEEEcCCCceeeecccCCCceEEEEECCCC-CEEEEEcCCCEEEEEE
Confidence                     0000001111  122234567889999999999999999999999999999998 7899999999999999


Q ss_pred             cCCCCcceEEEeeccCCceeEEEeccCCCCeEEEEcCCCcEEEEecCCCCCCCCCCceeeeccCCCCeeEEEEecCCCcE
Q 021657          121 ARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWSPDKSSV  200 (309)
Q Consensus       121 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l  200 (309)
                      +.+++   ......|...|.+++|+| + ..+++++.||.|++||+.+      ++.+..+.+|...|.+++|+|+++. 
T Consensus      1032 ~~~~~---~~~~~~~~~~v~~~~~~~-~-~~l~~~~~dg~v~vwd~~~------~~~~~~~~~~~~~v~~~~~s~d~~~- 1099 (1249)
T 3sfz_A         1032 WQTGD---YVFLQAHQETVKDFRLLQ-D-SRLLSWSFDGTVKVWNVIT------GRIERDFTCHQGTVLSCAISSDATK- 1099 (1249)
T ss_dssp             TTTTE---EECCBCCSSCEEEEEECS-S-SEEEEEESSSEEEEEETTT------TCCCEEEECCSSCCCCEEECSSSSS-
T ss_pred             CCCCc---eEEEecCCCcEEEEEEcC-C-CcEEEEECCCcEEEEECCC------CceeEEEcccCCcEEEEEECCCCCE-
Confidence            98876   334568999999999999 4 4678889999999999999      8889999999999999999999997 


Q ss_pred             EEEecCCCcEEEEeCCcccccccCCCCCcCCCCceeeeecCCCcceeeEEEccCCCeEEEEecCCCCCCCCCCeEEEEEc
Q 021657          201 FGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKVVDFHWNASDPWTVVSVSDDCDSTGGGGTLQIWRM  280 (309)
Q Consensus       201 ~~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~s~d~~s~~~dg~v~vw~~  280 (309)
                      +++++.|+.|++||+..               ...+..+.+|...|++++|+|++.+++        +|+.||.|++||+
T Consensus      1100 l~s~s~d~~v~iwd~~~---------------~~~~~~l~~h~~~v~~~~~s~dg~~la--------t~~~dg~i~vwd~ 1156 (1249)
T 3sfz_A         1100 FSSTSADKTAKIWSFDL---------------LSPLHELKGHNGCVRCSAFSLDGILLA--------TGDDNGEIRIWNV 1156 (1249)
T ss_dssp             CEEECCSSCCCEECSSS---------------SSCSBCCCCCSSCEEEEEECSSSSEEE--------EEETTSCCCEEES
T ss_pred             EEEEcCCCcEEEEECCC---------------cceeeeeccCCCcEEEEEECCCCCEEE--------EEeCCCEEEEEEC
Confidence            56999999999999987               334556778999999999999887655        4445599999999


Q ss_pred             cccccCChhhHhHhh---------hcccceEEEeeeCC
Q 021657          281 SDLIYRPQDEVLAEL---------EKFKAHVISCTSKP  309 (309)
Q Consensus       281 ~~~~~~~~~~~~~~~---------~~h~~~v~~~~~~P  309 (309)
                      ..      ++++..+         .+|.+.|.+++|+|
T Consensus      1157 ~~------~~~~~~~~~~~~~~~~~~~~~~v~~l~fs~ 1188 (1249)
T 3sfz_A         1157 SD------GQLLHSCAPISVEEGTATHGGWVTDVCFSP 1188 (1249)
T ss_dssp             SS------SCCCCCCCCCC-------CCSCCCEEEECT
T ss_pred             CC------CceEEEeccccccccccccCceEEEEEECC
Confidence            84      4444333         67999999999987

>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A

Probab=100.00  E-value=1.4e-34  Score=234.28  Aligned_cols=248  Identities=14%  Similarity=0.194  Sum_probs=186.3

Q ss_pred             CCCcceEEEEECCC----CCEEEEecCCCcEEEEeCCccccccccCC----ccccccCC-CCceeecCCCCCCCCcccCC
Q 021657            7 HQDNAEFALAMCPT----EPYVLSGGKDKSVVLWSIQDHITSSATDP----ATAKSAGS-SGSIIKQSPKPGDGNDKAAD   77 (309)
Q Consensus         7 H~~~~V~~~~~~~~----~~~l~t~~~dg~i~vwd~~~~~~~~~~~~----~~~~~~~~-~~~~~~~~~~~~~~~~~~~~   77 (309)
                      |.. .|++++|+|+    +++|++|+.||.|++||+.++........    ........ ..  ..+..+..++.+.+|+
T Consensus        68 ~~~-~v~~~~~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~--~~l~s~~~dg~i~iwd  144 (366)
T 3k26_A           68 ADE-NFYTCAWTYDSNTSHPLLAVAGSRGIIRIINPITMQCIKHYVGHGNAINELKFHPRDP--NLLLSVSKDHALRLWN  144 (366)
T ss_dssp             TTC-CEEEEEEEECTTTCCEEEEEEETTCEEEEECTTTCCEEEEEESCCSCEEEEEECSSCT--TEEEEEETTSCEEEEE
T ss_pred             CCC-cEEEEEeccCCCCCCCEEEEecCCCEEEEEEchhceEeeeecCCCCcEEEEEECCCCC--CEEEEEeCCCeEEEEE
Confidence            555 7999999998    67999999999999999987643332221    11111111 11  1223345588999999


Q ss_pred             CCCcCccccc---ccccCCeEEEEEecCCCcEEEEEcCCCeEEEEEcCCCCcc--------------------------e
Q 021657           78 GPSVGPRGIY---NGHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSP--------------------------V  128 (309)
Q Consensus        78 ~~~~~~~~~~---~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~--------------------------~  128 (309)
                      ..+.+.+..+   .+|...|.+++|+|++ .+|++++.||.|++||+++++..                          .
T Consensus       145 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  223 (366)
T 3k26_A          145 IQTDTLVAIFGGVEGHRDEVLSADYDLLG-EKIMSCGMDHSLKLWRINSKRMMNAIKESYDYNPNKTNRPFISQKIHFPD  223 (366)
T ss_dssp             TTTTEEEEEECSTTSCSSCEEEEEECTTS-SEEEEEETTSCEEEEESCSHHHHHHHHHHHTCCGGGCSSCCCCEEECCCS
T ss_pred             eecCeEEEEecccccccCceeEEEECCCC-CEEEEecCCCCEEEEECCCCccccccceeEEecCCCCcccccceeeccCc
Confidence            9998888777   7899999999999998 88999999999999999865411                          1


Q ss_pred             EEEeeccCCceeEEEeccCCCCeEEEEcCCCcEEEEecCCCCCC--------CCCCceeeeccCCCCeeEEEEecC--CC
Q 021657          129 IKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSN--------GVGSPINKFEGHSAAVLCVQWSPD--KS  198 (309)
Q Consensus       129 ~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~--------~~~~~~~~~~~~~~~v~~~~~~~~--~~  198 (309)
                      ......|...|.+++|+   ++++++++.|+.|++||+++....        .....+..+..|...|++++|+|+  +.
T Consensus       224 ~~~~~~~~~~v~~~~~~---~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~  300 (366)
T 3k26_A          224 FSTRDIHRNYVDCVRWL---GDLILSKSCENAIVCWKPGKMEDDIDKIKPSESNVTILGRFDYSQCDIWYMRFSMDFWQK  300 (366)
T ss_dssp             EEECSSCSSCCCEEEEE---TTEEEEECSSSEEEEEEESSTTCCGGGCCTTCCCEEEEEEEECSSCCSSCCCCEECTTSS
T ss_pred             cccccCCcceEEEEEEc---CCEEEEEecCCEEEEEeCCCccccccccccCCcchheeccccccCCcEEEEEEcCCCCCc
Confidence            22233489999999997   569999999999999999873210        001347778888999999999999  88


Q ss_pred             cEEEEecCCCcEEEEeCCcccccccCCCCCcCCCCceeeeecCC--CcceeeEEEccCCCeEEEEecCCCCCCCCCCeEE
Q 021657          199 SVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGH--RDKVVDFHWNASDPWTVVSVSDDCDSTGGGGTLQ  276 (309)
Q Consensus       199 ~l~~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~v~~~~~~~~~~~~~~s~s~d~~s~~~dg~v~  276 (309)
                      + +++|+.||.|++||++.....           ......+.+|  ...|++++|+|++.+++        +++.||.|+
T Consensus       301 ~-l~~~~~dg~i~vwd~~~~~~~-----------~~~~~~~~~~~~~~~v~~~~~s~~~~~l~--------s~~~dg~i~  360 (366)
T 3k26_A          301 M-LALGNQVGKLYVWDLEVEDPH-----------KAKCTTLTHHKCGAAIRQTSFSRDSSILI--------AVCDDASIW  360 (366)
T ss_dssp             E-EEEECTTSCEEEEECCSSSGG-----------GCEEEEECCTTCCSCEEEEEECTTSSEEE--------EEETTSEEE
T ss_pred             E-EEEEecCCcEEEEECCCCCCc-----------cccceEEcccccCCceEEEEeCCCCCeEE--------EEeCCCEEE
Confidence            5 679999999999999873221           1133456666  78999999999887655        444559999


Q ss_pred             EEEcc
Q 021657          277 IWRMS  281 (309)
Q Consensus       277 vw~~~  281 (309)
                      +||+.
T Consensus       361 iwd~~  365 (366)
T 3k26_A          361 RWDRL  365 (366)
T ss_dssp             EEEC-
T ss_pred             EEEec
Confidence            99986

>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*

Probab=100.00  E-value=2.4e-33  Score=228.78  Aligned_cols=242  Identities=17%  Similarity=0.191  Sum_probs=180.0

Q ss_pred             CCCCCcceEEEEECC-CCCEEEEecCCCcEEEEeCCccccccccCCccccccCCCCceeecCCCCCCCCcccCCCCCcCc
Q 021657            5 TGHQDNAEFALAMCP-TEPYVLSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGP   83 (309)
Q Consensus         5 ~~H~~~~V~~~~~~~-~~~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   83 (309)
                      .+|.+ .|++++|+| ++.+|++++.|+.|++||+.+...                                      ..
T Consensus       115 ~~h~~-~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~--------------------------------------~~  155 (383)
T 3ei3_B          115 MGPGD-AITGMKFNQFNTNQLFVSSIRGATTLRDFSGSVI--------------------------------------QV  155 (383)
T ss_dssp             CSTTC-BEEEEEEETTEEEEEEEEETTTEEEEEETTSCEE--------------------------------------EE
T ss_pred             CCcCC-ceeEEEeCCCCCCEEEEEeCCCEEEEEECCCCce--------------------------------------EE
Confidence            47998 899999999 789999999999999999974210                                      11


Q ss_pred             ccccccccCCeEEEEEecCCCcEEEEEcCCCeEEEEEcCCCCcceEEEeeccCCceeEEEeccCCCC-eEEEEcCCCcEE
Q 021657           84 RGIYNGHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDN-LILTGSADNSVR  162 (309)
Q Consensus        84 ~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~-~l~~~~~dg~i~  162 (309)
                      ......|...|.+++|+|++ .+|++|+.|+.|++||++ ++  ....+..|...|.+++|+| ++. +|++++.|+.|+
T Consensus       156 ~~~~~~~~~~v~~~~~~~~~-~~l~~~~~d~~i~i~d~~-~~--~~~~~~~h~~~v~~~~~~~-~~~~~l~s~~~d~~i~  230 (383)
T 3ei3_B          156 FAKTDSWDYWYCCVDVSVSR-QMLATGDSTGRLLLLGLD-GH--EIFKEKLHKAKVTHAEFNP-RCDWLMATSSVDATVK  230 (383)
T ss_dssp             EECCCCSSCCEEEEEEETTT-TEEEEEETTSEEEEEETT-SC--EEEEEECSSSCEEEEEECS-SCTTEEEEEETTSEEE
T ss_pred             EeccCCCCCCeEEEEECCCC-CEEEEECCCCCEEEEECC-CC--EEEEeccCCCcEEEEEECC-CCCCEEEEEeCCCEEE
Confidence            11223456889999999998 889999999999999994 44  5777889999999999999 777 999999999999


Q ss_pred             EEecCCCCCCCCCCceeeeccCCCCeeEEEEec-CCCcEEEEecCCCcEEEEeCCcccccccCCCCCcCCCCceeeeecC
Q 021657          163 MFDRRNLTSNGVGSPINKFEGHSAAVLCVQWSP-DKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAG  241 (309)
Q Consensus       163 i~d~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~  241 (309)
                      +||+++....  ...+..+ .|...|.+++|+| ++.+ +++++.|+.|++||++...........        ......
T Consensus       231 iwd~~~~~~~--~~~~~~~-~~~~~v~~~~~s~~~~~~-l~~~~~d~~i~iwd~~~~~~~~~~~~~--------~~~~~~  298 (383)
T 3ei3_B          231 LWDLRNIKDK--NSYIAEM-PHEKPVNAAYFNPTDSTK-LLTTDQRNEIRVYSSYDWSKPDQIIIH--------PHRQFQ  298 (383)
T ss_dssp             EEEGGGCCST--TCEEEEE-ECSSCEEEEEECTTTSCE-EEEEESSSEEEEEETTBTTSCSEEEEC--------CBCCCT
T ss_pred             EEeCCCCCcc--cceEEEe-cCCCceEEEEEcCCCCCE-EEEEcCCCcEEEEECCCCccccccccc--------cccccc
Confidence            9999973211  2344445 6899999999999 9985 679999999999999873322110000        001122


Q ss_pred             CCcceeeEEEccCCCeEEEEecCCCC-CCCCCCeEEEEEccccccCChhhHhHhhhc--ccceEEEeeeCC
Q 021657          242 HRDKVVDFHWNASDPWTVVSVSDDCD-STGGGGTLQIWRMSDLIYRPQDEVLAELEK--FKAHVISCTSKP  309 (309)
Q Consensus       242 ~~~~v~~~~~~~~~~~~~~s~s~d~~-s~~~dg~v~vw~~~~~~~~~~~~~~~~~~~--h~~~v~~~~~~P  309 (309)
                      |...+. +.|+|++..+.++.+.|.. +|+.|+.|++||+.      +++++.++.+  |.+.+..++|+|
T Consensus       299 ~~~~~~-~~~~p~~~~~~~~~s~dg~~s~s~d~~i~iwd~~------~~~~~~~l~~~~~~~~~~~~~~s~  362 (383)
T 3ei3_B          299 HLTPIK-ATWHPMYDLIVAGRYPDDQLLLNDKRTIDIYDAN------SGGLVHQLRDPNAAGIISLNKFSP  362 (383)
T ss_dssp             TSCCCC-CEECSSSSEEEEECBCCTTTCTTCCCCEEEEETT------TCCEEEEECBTTBCSCCCEEEECT
T ss_pred             cccceE-EeccCCCCceEEEecCCcccccCCCCeEEEEecC------CCceeeeecCCCCCceEEEEEEec
Confidence            344444 4667666655554433211 55677999999998      6777888876  456777779987

>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}

Probab=100.00  E-value=6.4e-34  Score=253.89  Aligned_cols=193  Identities=10%  Similarity=0.029  Sum_probs=139.7

Q ss_pred             ccCCeEEEEEecCCCcEEEEEcCCCeEEEEEcCCCCcce--EEE--ee-----ccCCceeEEEeccCCCCeEEEEcCCCc
Q 021657           90 HEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPV--IKV--EK-----AHDADLHCVDWNPLDDNLILTGSADNS  160 (309)
Q Consensus        90 ~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~--~~~--~~-----~~~~~v~~~~~~~~~~~~l~~~~~dg~  160 (309)
                      |...+..++|+|++ .+|++|+.|++|++||+.++....  ...  +.     +|...|.+++|+| ++++||+|+.||+
T Consensus       434 ~~~~v~sv~~spdg-~~laSgs~DgtVrlWd~~~g~~~~~~~~~~~l~~~~~~~h~~~V~svafsp-dg~~LAsgs~Dgt  511 (902)
T 2oaj_A          434 GVRTKRQKLPAEYG-TAFITGHSNGSVRIYDASHGDIQDNASFEVNLSRTLNKAKELAVDKISFAA-ETLELAVSIETGD  511 (902)
T ss_dssp             SBCCCCCCCCCSEE-EEEEEEETTSEEEEEESSCCTTTTTBCEEEEHHHHTTCSSSCCEEEEEEET-TTTEEEEEETTSC
T ss_pred             CcCCCCcccccccC-cEEEEecCCCcEEEEECCCccccCCceEEeechhhcCCCCCCceeEEEecC-CCCeEEEEecCcE
Confidence            33334444556777 899999999999999998775211  111  11     7889999999999 9999999999999


Q ss_pred             EEEEecCCCCCCC-------C--------------------------------CCceeeeccCCCCeeEEEEecCCCcEE
Q 021657          161 VRMFDRRNLTSNG-------V--------------------------------GSPINKFEGHSAAVLCVQWSPDKSSVF  201 (309)
Q Consensus       161 i~i~d~~~~~~~~-------~--------------------------------~~~~~~~~~~~~~v~~~~~~~~~~~l~  201 (309)
                      |++||+.+....+       .                                .+++..+.+|.+.|++|+|+|+| + |
T Consensus       512 V~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~h~~~V~svafSpdG-~-l  589 (902)
T 2oaj_A          512 VVLFKYEVNQFYSVENRPESGDLEMNFRRFSLNNTNGVLVDVRDRAPTGVRQGFMPSTAVHANKGKTSAINNSNIG-F-V  589 (902)
T ss_dssp             EEEEEEEECCC---------------CCSCCGGGSSCSEEECGGGCCTTCSEEEEEEEEECCCSCSEEEEEECBTS-E-E
T ss_pred             EEEEEecCccccCccccCCCcccceeeeeccccCCccccccccccCCCCCCCccceeEEEEcCCCcEEEEEecCCc-E-E
Confidence            9999998631000       0                                02467788899999999999999 5 7


Q ss_pred             EEecCCCcEEEEeCCcccccccCCCCCcCCCCceeeeec-CCCcceeeEEEc-----cCC--CeEEEEecCCCCCCCCCC
Q 021657          202 GSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHA-GHRDKVVDFHWN-----ASD--PWTVVSVSDDCDSTGGGG  273 (309)
Q Consensus       202 ~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~v~~~~~~-----~~~--~~~~~s~s~d~~s~~~dg  273 (309)
                      |+|+.|++|+|||++.......          ..+..+. +|...|++++|+     ||+  ...+++++.|       +
T Consensus       590 Asgs~D~tv~lwd~~~~~~~~~----------~~~~~~~~gh~~~V~sv~Fs~~~~~~Dg~~~~~l~sgs~D-------~  652 (902)
T 2oaj_A          590 GIAYAAGSLMLIDRRGPAIIYM----------ENIREISGAQSACVTCIEFVIMEYGDDGYSSILMVCGTDM-------G  652 (902)
T ss_dssp             EEEETTSEEEEEETTTTEEEEE----------EEGGGTCSSCCCCEEEEEEEEEECTTSSSEEEEEEEEETT-------S
T ss_pred             EEEeCCCcEEEEECCCCeEEEE----------eehhHhccccccceEEEEEEEEecCCCCCcceEEEEEecC-------C
Confidence            8999999999999876211000          0112343 899999999999     886  3566655555       9


Q ss_pred             eEEEEEccccccCChhhHhHhhhccc-----ceEEEee
Q 021657          274 TLQIWRMSDLIYRPQDEVLAELEKFK-----AHVISCT  306 (309)
Q Consensus       274 ~v~vw~~~~~~~~~~~~~~~~~~~h~-----~~v~~~~  306 (309)
                      +|++||+...   .+++++.++.+|.     ++|..++
T Consensus       653 tv~~wd~~p~---~~g~~~~~~~~~~~~~~~~~v~~i~  687 (902)
T 2oaj_A          653 EVITYKILPA---SGGKFDVQLMDITNVTSKGPIHKID  687 (902)
T ss_dssp             EEEEEEEEEC---GGGCEEEEEEEEEECCSSCCCCEEE
T ss_pred             cEEEEEEecC---CCCcEEEEecCceecCCCCceEEEE
Confidence            9999999211   1566777777774     5666554

>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}

Probab=100.00  E-value=5.3e-34  Score=229.10  Aligned_cols=233  Identities=9%  Similarity=0.049  Sum_probs=164.6

Q ss_pred             EECCCCCEEEEecCCCcEEEEeCCccccccccCCccccccCCCCceeecCCCCCCCCcccCCCC---------CcCcccc
Q 021657           16 AMCPTEPYVLSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGP---------SVGPRGI   86 (309)
Q Consensus        16 ~~~~~~~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~   86 (309)
                      .+.+++.+|++|+.||+|++||++++...................   +..+..++.+.+|+..         +.+.+..
T Consensus        43 ~~~~d~~~l~sg~~Dg~v~iwd~~~~~~~~~~~~~~v~~~~~~~~---~~s~s~D~~i~~w~~~~~~~~~~~~~~~~~~~  119 (343)
T 3lrv_A           43 SMYYDKWVCMCRCEDGALHFTQLKDSKTITTITTPNPRTGGEHPA---IISRGPCNRLLLLYPGNQITILDSKTNKVLRE  119 (343)
T ss_dssp             SSSEEEEEEEEEEETTEEEEEEESSSSCEEEEEEECCCTTCCCCS---EEEECSTTEEEEEETTTEEEEEETTTCCEEEE
T ss_pred             hhcCCCCEEEEECCCCcEEEEECCCCcEEEEEecCCceeeeeCCc---eEEecCCCeEEEEEccCceEEeecCCcceeEE
Confidence            344578899999999999999998774433222111111011111   3445566777777544         3333333


Q ss_pred             cc-cccCCeEEEEEec--CCCcEEEEEcCCCeEEEEEcCCCCcceEEEe-eccCCceeEEEeccCCCCeEEEEcCCCcEE
Q 021657           87 YN-GHEDTVEDVTFCP--SSAQEFCSVGDDSCLILWDARVGTSPVIKVE-KAHDADLHCVDWNPLDDNLILTGSADNSVR  162 (309)
Q Consensus        87 ~~-~~~~~v~~~~~~~--~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~-~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~  162 (309)
                      +. +|...|.+++|+|  ++ .+|++++.||.|++||+++++  ..... ..+...+.+++|+| ++.+|++|+.||.|+
T Consensus       120 ~~~~~~~~v~~~~~~~~~~~-~~l~s~s~dg~i~~wd~~~~~--~~~~~~~~~~~~i~~~~~~p-dg~~lasg~~dg~i~  195 (343)
T 3lrv_A          120 IEVDSANEIIYMYGHNEVNT-EYFIWADNRGTIGFQSYEDDS--QYIVHSAKSDVEYSSGVLHK-DSLLLALYSPDGILD  195 (343)
T ss_dssp             EECCCSSCEEEEECCC---C-CEEEEEETTCCEEEEESSSSC--EEEEECCCSSCCCCEEEECT-TSCEEEEECTTSCEE
T ss_pred             eecCCCCCEEEEEcCCCCCC-CEEEEEeCCCcEEEEECCCCc--EEEEEecCCCCceEEEEECC-CCCEEEEEcCCCEEE
Confidence            32 6678999999999  88 889999999999999999887  34443 34566899999999 999999999999999


Q ss_pred             EEecCCCCCCCCCCce-eeecc-CCCCeeEEEEecCCCcEEEEecCCCcEEEEeCCcccccccCCCCCcCCCCceeeeec
Q 021657          163 MFDRRNLTSNGVGSPI-NKFEG-HSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHA  240 (309)
Q Consensus       163 i~d~~~~~~~~~~~~~-~~~~~-~~~~v~~~~~~~~~~~l~~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~  240 (309)
                      +||+++      ++.+ ..+.. |..+|++++|+|++.+ +++++ |+.|++||++......            .+..+.
T Consensus       196 iwd~~~------~~~~~~~~~~~h~~~v~~l~fs~~g~~-l~s~~-~~~v~iwd~~~~~~~~------------~~~~~~  255 (343)
T 3lrv_A          196 VYNLSS------PDQASSRFPVDEEAKIKEVKFADNGYW-MVVEC-DQTVVCFDLRKDVGTL------------AYPTYT  255 (343)
T ss_dssp             EEESSC------TTSCCEECCCCTTSCEEEEEECTTSSE-EEEEE-SSBEEEEETTSSTTCB------------SSCCCB
T ss_pred             EEECCC------CCCCccEEeccCCCCEEEEEEeCCCCE-EEEEe-CCeEEEEEcCCCCcce------------eecccc
Confidence            999998      6666 77887 9999999999999996 56777 5599999999833221            111222


Q ss_pred             CCCccee--eEEEccCCCeEEEEecCCCCCCCCCCeEEEEEccc
Q 021657          241 GHRDKVV--DFHWNASDPWTVVSVSDDCDSTGGGGTLQIWRMSD  282 (309)
Q Consensus       241 ~~~~~v~--~~~~~~~~~~~~~s~s~d~~s~~~dg~v~vw~~~~  282 (309)
                      .|...+.  +++|+|++.++++.++.       |+.+++|++..
T Consensus       256 ~~~~~~~~~~~~~~~~g~~l~~~s~~-------d~~i~v~~~~~  292 (343)
T 3lrv_A          256 IPEFKTGTVTYDIDDSGKNMIAYSNE-------SNSLTIYKFDK  292 (343)
T ss_dssp             C-----CCEEEEECTTSSEEEEEETT-------TTEEEEEEECT
T ss_pred             cccccccceEEEECCCCCEEEEecCC-------CCcEEEEEEcc
Confidence            3444444  69999998876632222       48999999963

>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A

Probab=100.00  E-value=1.9e-33  Score=242.82  Aligned_cols=227  Identities=16%  Similarity=0.263  Sum_probs=191.2

Q ss_pred             CCCCCcceEEEEECCCCCEEEEecCCCcEEEEeCCccccccccCCccccccCCCCceeecCCCCCCCCcccCCCCCcCcc
Q 021657            5 TGHQDNAEFALAMCPTEPYVLSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPR   84 (309)
Q Consensus         5 ~~H~~~~V~~~~~~~~~~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   84 (309)
                      ..|.+ .|++++|+|++++|++++ ++.|+|||++++..                                    ..+..
T Consensus        15 ~~~~~-~v~~~~~spdg~~l~~~~-~~~v~v~~~~~~~~------------------------------------~~~~~   56 (615)
T 1pgu_A           15 STQRN-FTTHLSYDPTTNAIAYPC-GKSAFVRCLDDGDS------------------------------------KVPPV   56 (615)
T ss_dssp             CCCTT-CCCCCEEETTTTEEEEEE-TTEEEEEECCSSCC------------------------------------SSCSE
T ss_pred             CCccC-ceeEEEECCCCCEEEEec-CCeEEEEECCCCCC------------------------------------ccccc
Confidence            35777 899999999999999998 88999999974200                                    01345


Q ss_pred             cccccccCC-eEEEEEec--CCCcEEEEEcCCCeEEEEEcCCC------CcceEEEeeccCCceeEEEeccCCCCeEEEE
Q 021657           85 GIYNGHEDT-VEDVTFCP--SSAQEFCSVGDDSCLILWDARVG------TSPVIKVEKAHDADLHCVDWNPLDDNLILTG  155 (309)
Q Consensus        85 ~~~~~~~~~-v~~~~~~~--~~~~~l~s~~~dg~i~iwd~~~~------~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~  155 (309)
                      ..+.+|... |++++|+|  ++ .+|++++.||.|++||+.++      +......+..|...|.+++|+| ++++|+++
T Consensus        57 ~~~~~h~~~~v~~~~~sp~~~~-~~l~s~~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~-~~~~l~~~  134 (615)
T 1pgu_A           57 VQFTGHGSSVVTTVKFSPIKGS-QYLCSGDESGKVIVWGWTFDKESNSVEVNVKSEFQVLAGPISDISWDF-EGRRLCVV  134 (615)
T ss_dssp             EEECTTTTSCEEEEEECSSTTC-CEEEEEETTSEEEEEEEEEEGGGTEEEEEEEEEEECCSSCEEEEEECT-TSSEEEEE
T ss_pred             eEEecCCCceEEEEEECcCCCC-CEEEEecCCCEEEEEeCCCCcccccccccccchhhcccccEEEEEEeC-CCCEEEEe
Confidence            677889999 99999999  88 88999999999999999755      3336677788999999999999 99999999


Q ss_pred             cCC----CcEEEEecCCCCCCCCCCceeeeccCCCCeeEEEEecCCCcEEEEecCCCcEEEEeCCcccccccCCCCCcCC
Q 021657          156 SAD----NSVRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNY  231 (309)
Q Consensus       156 ~~d----g~i~i~d~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~  231 (309)
                      +.+    +.|++||  .      ++.+..+..|...|.+++|+|++++++++++.|+.|++||++.              
T Consensus       135 ~~~~~~~~~v~~~d--~------~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~v~vwd~~~--------------  192 (615)
T 1pgu_A          135 GEGRDNFGVFISWD--S------GNSLGEVSGHSQRINACHLKQSRPMRSMTVGDDGSVVFYQGPP--------------  192 (615)
T ss_dssp             ECCSSCSEEEEETT--T------CCEEEECCSCSSCEEEEEECSSSSCEEEEEETTTEEEEEETTT--------------
T ss_pred             ccCCCCccEEEEEE--C------CCcceeeecCCccEEEEEECCCCCcEEEEEeCCCcEEEEeCCC--------------
Confidence            987    6888888  4      6688889999999999999999986678999999999999887              


Q ss_pred             CCceeeeecCCCc---ceeeEEEccC-CCeEEEEecCCCCCCCCCCeEEEEEccccccCChhhHhHhh-h---cccceEE
Q 021657          232 PAGLFFQHAGHRD---KVVDFHWNAS-DPWTVVSVSDDCDSTGGGGTLQIWRMSDLIYRPQDEVLAEL-E---KFKAHVI  303 (309)
Q Consensus       232 ~~~~~~~~~~~~~---~v~~~~~~~~-~~~~~~s~s~d~~s~~~dg~v~vw~~~~~~~~~~~~~~~~~-~---~h~~~v~  303 (309)
                       ...+..+.+|..   .|.+++|+|+ +.+ +++       ++.||.|++||+.      +++++..+ .   +|...|.
T Consensus       193 -~~~~~~~~~~~~~~~~v~~~~~~~~~~~~-l~~-------~~~dg~i~vwd~~------~~~~~~~~~~~~~~~~~~v~  257 (615)
T 1pgu_A          193 -FKFSASDRTHHKQGSFVRDVEFSPDSGEF-VIT-------VGSDRKISCFDGK------SGEFLKYIEDDQEPVQGGIF  257 (615)
T ss_dssp             -BEEEEEECSSSCTTCCEEEEEECSTTCCE-EEE-------EETTCCEEEEETT------TCCEEEECCBTTBCCCSCEE
T ss_pred             -cceeeeecccCCCCceEEEEEECCCCCCE-EEE-------EeCCCeEEEEECC------CCCEeEEecccccccCCceE
Confidence             445667788988   9999999998 665 444       4445999999998      67777777 5   8999999


Q ss_pred             EeeeC
Q 021657          304 SCTSK  308 (309)
Q Consensus       304 ~~~~~  308 (309)
                      +++|+
T Consensus       258 ~~~~~  262 (615)
T 1pgu_A          258 ALSWL  262 (615)
T ss_dssp             EEEES
T ss_pred             EEEEc
Confidence            99884

>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A

Probab=100.00  E-value=2.5e-32  Score=225.32  Aligned_cols=259  Identities=18%  Similarity=0.246  Sum_probs=204.3

Q ss_pred             eEEEEECCCCCEEEEecCCCcEEEEeCCcccccccc----C--CccccccCCCCceeecCCCCCCCCcccCCCCCcCccc
Q 021657           12 EFALAMCPTEPYVLSGGKDKSVVLWSIQDHITSSAT----D--PATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRG   85 (309)
Q Consensus        12 V~~~~~~~~~~~l~t~~~dg~i~vwd~~~~~~~~~~----~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   85 (309)
                      ++.|+|+++ ++|++|. |++|+|||..++......    .  ............  .+..+..++.+.+|+..+.+.+.
T Consensus       108 ~~~l~wS~~-n~lAvgl-d~tV~lWd~~tg~~~~~~~~~~~~~~V~sv~fspdg~--~lasgs~Dg~v~iWd~~~~~~~~  183 (420)
T 4gga_A          108 LNLVDWSSG-NVLAVAL-DNSVYLWSASSGDILQLLQMEQPGEYISSVAWIKEGN--YLAVGTSSAEVQLWDVQQQKRLR  183 (420)
T ss_dssp             CBCEEECTT-SEEEEEE-TTEEEEEETTTCCEEEEEECCSTTCCEEEEEECTTSS--EEEEEETTSCEEEEETTTTEEEE
T ss_pred             ceeEEECCC-CEEEEEe-CCEEEEEECCCCCEEEEEEecCCCCcEEEEEECCCCC--EEEEEECCCeEEEEEcCCCcEEE
Confidence            567999975 4777665 999999999987433211    1  112222222222  33446678999999999999999


Q ss_pred             ccccccCCeEEEEEecCCCcEEEEEcCCCeEEEEEcCCCCcceEEEeeccCCceeEEEeccCCCCeEEEEcCCCcEEEEe
Q 021657           86 IYNGHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFD  165 (309)
Q Consensus        86 ~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d  165 (309)
                      .+.+|...+.++.+++   .+|++|+.|+.+++||...... ....+.+|...+..+.|+| ++.++++++.|+.+++||
T Consensus       184 ~~~~h~~~v~~~s~~~---~~l~sgs~d~~i~~~d~~~~~~-~~~~~~~h~~~~~~~~~~~-~g~~l~s~~~D~~v~i~~  258 (420)
T 4gga_A          184 NMTSHSARVGSLSWNS---YILSSGSRSGHIHHHDVRVAEH-HVATLSGHSQEVCGLRWAP-DGRHLASGGNDNLVNVWP  258 (420)
T ss_dssp             EECCCSSCEEEEEEET---TEEEEEETTSEEEEEETTSSSC-EEEEEECCSSCEEEEEECT-TSSEEEEEETTSCEEEEE
T ss_pred             EEeCCCCceEEEeeCC---CEEEEEeCCCceeEeeecccce-eeEEecccccceeeeeecC-CCCeeeeeeccccceEEe
Confidence            9999999999988854   6899999999999999887653 5677789999999999999 999999999999999999


Q ss_pred             cCCCCCCCCCCceeeeccCCCCeeEEEEecCCCcEEEE--ecCCCcEEEEeCCcccccccCCCCCcCCCCceeeeecCCC
Q 021657          166 RRNLTSNGVGSPINKFEGHSAAVLCVQWSPDKSSVFGS--SAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHR  243 (309)
Q Consensus       166 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~--~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  243 (309)
                      .......  ...+.....|...|.+++|+|++..++++  |+.|+.|++||+++               ..+...+.. .
T Consensus       259 ~~~~~~~--~~~~~~~~~~~~~V~~~~~~p~~~~~la~~~gs~D~~I~iwd~~t---------------~~~~~~~~~-~  320 (420)
T 4gga_A          259 SAPGEGG--WVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCS---------------GACLSAVDA-H  320 (420)
T ss_dssp             SSCCSSC--SCCSEEECCCSSCEEEEEECTTCTTEEEEEECTTTCEEEEEETTT---------------TEEEEEEEC-S
T ss_pred             ecccccc--ceeeeeecccCCceeeeeeCCCcccEEEEEeecCCCEEEEEeCCc---------------cccceeecc-c
Confidence            9873211  23456677889999999999998887765  45799999999987               333444443 4


Q ss_pred             cceeeEEEccCCCeEEEEecCCCCCCCCCCeEEEEEccccccCChhhHhHhhhcccceEEEeeeCC
Q 021657          244 DKVVDFHWNASDPWTVVSVSDDCDSTGGGGTLQIWRMSDLIYRPQDEVLAELEKFKAHVISCTSKP  309 (309)
Q Consensus       244 ~~v~~~~~~~~~~~~~~s~s~d~~s~~~dg~v~vw~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~P  309 (309)
                      ..+.++.|+|++..++++      +|+.|+.|+|||+.      +++++.++.+|.+.|++++|+|
T Consensus       321 ~~v~~~~~~~~~~~lv~~------sg~~d~~I~iwd~~------~~~~v~~l~gH~~~V~~l~~sp  374 (420)
T 4gga_A          321 SQVCSILWSPHYKELISG------HGFAQNQLVIWKYP------TMAKVAELKGHTSRVLSLTMSP  374 (420)
T ss_dssp             SCEEEEEEETTTTEEEEE------ECTTTCCEEEEETT------TCCEEEEECCCSSCEEEEEECT
T ss_pred             cceeeeeecCCCCeEEEE------EecCCCEEEEEECC------CCcEEEEEcCCCCCEEEEEEcC
Confidence            578899999999987754      23356999999998      7888999999999999999998

>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A

Probab=100.00  E-value=1.1e-32  Score=222.32  Aligned_cols=260  Identities=10%  Similarity=0.108  Sum_probs=175.9

Q ss_pred             ccCCCCCcceEEEEECCCCCEEEEecCCCcEEEEeCCccccccccC--CccccccCCCCceeecCCCCCCCCcccCCCCC
Q 021657            3 ILTGHQDNAEFALAMCPTEPYVLSGGKDKSVVLWSIQDHITSSATD--PATAKSAGSSGSIIKQSPKPGDGNDKAADGPS   80 (309)
Q Consensus         3 ~l~~H~~~~V~~~~~~~~~~~l~t~~~dg~i~vwd~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (309)
                      .+++|.+ .|++++|+|||++|++|+.|+ ++|||++.........  .............. ...+..++.+++|+..+
T Consensus        14 ~~~~h~~-~V~~v~fs~dg~~la~g~~~~-~~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~d~~v~iWd~~~   90 (355)
T 3vu4_A           14 PENHVSN-PVTDYEFNQDQSCLILSTLKS-FEIYNVHPVAHIMSQEMRHLSKVRMLHRTNYV-AFVTGVKEVVHIWDDVK   90 (355)
T ss_dssp             -----CC-CCCEEEECTTSSEEEEECSSE-EEEEEETTEEEEEEEECSCCCEEEECTTSSEE-EEECSSTTEEEEEETTT
T ss_pred             ccccCCC-ceEEEEECCCCCEEEEEcCCE-EEEEecCCcceeeeeecCCeEEEEEcCCCCEE-EEEECCccEEEEEECCC
Confidence            4578988 899999999999999998775 7899988663332211  11111111111111 12233456899999988


Q ss_pred             cCcccccccccCCeEEEEEecCC----------------C------------------cEEEE--EcCCCeEEEEEcCCC
Q 021657           81 VGPRGIYNGHEDTVEDVTFCPSS----------------A------------------QEFCS--VGDDSCLILWDARVG  124 (309)
Q Consensus        81 ~~~~~~~~~~~~~v~~~~~~~~~----------------~------------------~~l~s--~~~dg~i~iwd~~~~  124 (309)
                      .+.+..+. +...|.++.|+++.                .                  .+++.  |+.||.|++||+.++
T Consensus        91 ~~~~~~~~-~~~~v~~v~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~~s~~~la~~sg~~~g~v~iwd~~~~  169 (355)
T 3vu4_A           91 KQDVSRIK-VDAPVKDLFLSREFIVVSYGDVISVFKFGNPWKRITDDIRFGGVCEFSNGLLVYSNEFNLGQIHITKLQSS  169 (355)
T ss_dssp             TEEEEEEE-CSSCEEEEEECSSEEEEEETTEEEEEESSTTCCBSSCCEEEEEEEEEETTEEEEEESSCTTCEEEEECCC-
T ss_pred             CcEEEEEE-CCCceEEEEEcCCEEEEEEcCEEEEEECCCCceeeEEeccCCceEEEEccEEEEeCCCcCcEEEEEECCCC
Confidence            88877765 56678888887642                0                  12333  578889999998764


Q ss_pred             Cc--------------ceEEEeeccCCceeEEEeccCCCCeEEEEcCCCc-EEEEecCCCCCCCCCCceeeec-c-CCCC
Q 021657          125 TS--------------PVIKVEKAHDADLHCVDWNPLDDNLILTGSADNS-VRMFDRRNLTSNGVGSPINKFE-G-HSAA  187 (309)
Q Consensus       125 ~~--------------~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~-i~i~d~~~~~~~~~~~~~~~~~-~-~~~~  187 (309)
                      +.              +....+.+|...|++++|+| ++.+|++|+.|++ |++||+++      ++.+..+. + |...
T Consensus       170 ~~~~~~~~~~~~~~~~p~~~~~~~h~~~v~~~~~s~-~g~~l~s~s~d~~~v~iwd~~~------~~~~~~~~~g~h~~~  242 (355)
T 3vu4_A          170 GSATTQDQGVQQKAILGKGVLIKAHTNPIKMVRLNR-KSDMVATCSQDGTIIRVFKTED------GVLVREFRRGLDRAD  242 (355)
T ss_dssp             -----------------CCEEECCCSSCEEEEEECT-TSSEEEEEETTCSEEEEEETTT------CCEEEEEECTTCCSC
T ss_pred             CccccccccccccccCcccEEEEccCCceEEEEECC-CCCEEEEEeCCCCEEEEEECCC------CcEEEEEEcCCCCCc
Confidence            30              11566789999999999999 9999999999998 99999999      88999998 5 8999


Q ss_pred             eeEEEEecCCCcEEEEecCCCcEEEEeCCcccccccCCCC--------CcCCCCceeeeecCCCcceeeEEEccCCCeEE
Q 021657          188 VLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPR--------TTNYPAGLFFQHAGHRDKVVDFHWNASDPWTV  259 (309)
Q Consensus       188 v~~~~~~~~~~~l~~~~~~dg~i~iwd~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~  259 (309)
                      |++++|+|++++ |++++.|+.|++||++...........        ...+..........+......++|++++..++
T Consensus       243 v~~~~~s~~~~~-l~s~s~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~d~~~l~  321 (355)
T 3vu4_A          243 VVDMKWSTDGSK-LAVVSDKWTLHVFEIFNDQDNKRHALKGWINMKYFQSEWSLCNFKLSVDKHVRGCKIAWISESSLVV  321 (355)
T ss_dssp             EEEEEECTTSCE-EEEEETTCEEEEEESSCCSCCCSEETTTTEECCCCCCSSCSEEEECCCCTTCCCCEEEESSSSEEEE
T ss_pred             EEEEEECCCCCE-EEEEECCCEEEEEEccCCCCcccccccceeeccccccccceeEEEeccCCCCCceEEEEeCCCCEEE
Confidence            999999999996 679999999999999864221110000        00000001111112223457799999887766


Q ss_pred             EEecCCCCCCCCCCeEEEEEccc
Q 021657          260 VSVSDDCDSTGGGGTLQIWRMSD  282 (309)
Q Consensus       260 ~s~s~d~~s~~~dg~v~vw~~~~  282 (309)
                              +++.||.+++|++..
T Consensus       322 --------~~~~dg~~~~~~~~~  336 (355)
T 3vu4_A          322 --------VWPHTRMIETFKVVF  336 (355)
T ss_dssp             --------EETTTTEEEEEEEEE
T ss_pred             --------EEeCCCeEEEEEEEc
Confidence                    455569999999983

>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}

Probab=100.00  E-value=1.1e-33  Score=234.61  Aligned_cols=255  Identities=9%  Similarity=0.095  Sum_probs=180.6

Q ss_pred             CCCCcceEEEEECCCCCEEEEecCCCcEEEEeCC---ccccccccC--CccccccC--------------CCCceeecCC
Q 021657            6 GHQDNAEFALAMCPTEPYVLSGGKDKSVVLWSIQ---DHITSSATD--PATAKSAG--------------SSGSIIKQSP   66 (309)
Q Consensus         6 ~H~~~~V~~~~~~~~~~~l~t~~~dg~i~vwd~~---~~~~~~~~~--~~~~~~~~--------------~~~~~~~~~~   66 (309)
                      +|.+ .|++++|+|++++|++|+.||.|++||++   .+.......  ........              .......+..
T Consensus       109 ~h~~-~v~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  187 (437)
T 3gre_A          109 DCSS-TVTQITMIPNFDAFAVSSKDGQIIVLKVNHYQQESEVKFLNCECIRKINLKNFGKNEYAVRMRAFVNEEKSLLVA  187 (437)
T ss_dssp             ECSS-CEEEEEECTTSSEEEEEETTSEEEEEEEEEEEETTEEEEEEEEEEEEEEGGGGSSCCCEEEEEEEECSSCEEEEE
T ss_pred             cCCC-CEEEEEEeCCCCEEEEEeCCCEEEEEEeccccCCceeeccccceeEEEEccCcccccCceEEEEEEcCCCCEEEE
Confidence            5777 89999999999999999999999999995   221111000  00000000              0011223344


Q ss_pred             CCCCCCcccCCCCCcCccccccc--ccCCeEEEEEecCCCcEEEEEcCCCeEEEEEcCCCCcceEEEee-ccCCceeEEE
Q 021657           67 KPGDGNDKAADGPSVGPRGIYNG--HEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPVIKVEK-AHDADLHCVD  143 (309)
Q Consensus        67 ~~~~~~~~~~~~~~~~~~~~~~~--~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~-~~~~~v~~~~  143 (309)
                      +..++.+.+|+..+.+.+..+..  |...|++++|+|++ .+|++|+.||.|++||+++++  ....+. .|...|.+++
T Consensus       188 ~~~d~~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~s~~~-~~l~s~~~dg~i~iwd~~~~~--~~~~~~~~~~~~v~~~~  264 (437)
T 3gre_A          188 LTNLSRVIIFDIRTLERLQIIENSPRHGAVSSICIDEEC-CVLILGTTRGIIDIWDIRFNV--LIRSWSFGDHAPITHVE  264 (437)
T ss_dssp             EETTSEEEEEETTTCCEEEEEECCGGGCCEEEEEECTTS-CEEEEEETTSCEEEEETTTTE--EEEEEBCTTCEEEEEEE
T ss_pred             EeCCCeEEEEeCCCCeeeEEEccCCCCCceEEEEECCCC-CEEEEEcCCCeEEEEEcCCcc--EEEEEecCCCCceEEEE
Confidence            55678999999999999999988  89999999999998 889999999999999999866  555554 7788999996


Q ss_pred             eccC---CCCeEEEEcCCCcEEEEecCCCCCCCCCCceeeecc--------------------------CCCCeeEEEEe
Q 021657          144 WNPL---DDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEG--------------------------HSAAVLCVQWS  194 (309)
Q Consensus       144 ~~~~---~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~--------------------------~~~~v~~~~~~  194 (309)
                      |+|.   ++.+|++|+.||.|++||+++      ++.+..+.+                          |...|++++|+
T Consensus       265 ~~~~~s~~~~~l~s~~~dg~i~iwd~~~------~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~~l~~~  338 (437)
T 3gre_A          265 VCQFYGKNSVIVVGGSSKTFLTIWNFVK------GHCQYAFINSDEQPSMEHFLPIEKGLEELNFCGIRSLNALSTISVS  338 (437)
T ss_dssp             ECTTTCTTEEEEEEESTTEEEEEEETTT------TEEEEEEESSSSCCCGGGGSCBCSSGGGCCCCCCCSGGGGCCEEEE
T ss_pred             eccccCCCccEEEEEcCCCcEEEEEcCC------CcEEEEEEcCCCCCccceecccccccccceecccccCCceEEEEEC
Confidence            6651   577999999999999999998      665555543                          45568889999


Q ss_pred             cCCCcEEEEecCCCcEEEEeCCcccccccCCCCCc----------------------CCCCceeeeecCCCcceeeEEEc
Q 021657          195 PDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTT----------------------NYPAGLFFQHAGHRDKVVDFHWN  252 (309)
Q Consensus       195 ~~~~~l~~~~~~dg~i~iwd~~~~~~~~~~~~~~~----------------------~~~~~~~~~~~~~~~~v~~~~~~  252 (309)
                       +++ ++++|+.|+.|++||++.............                      ............|...|++++|+
T Consensus       339 -~~~-~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~i~~~  416 (437)
T 3gre_A          339 -NDK-ILLTDEATSSIVMFSLNELSSSKAVISPSRFSDVFIPTQVTANLTMLLRKMKRTSTHSVDDSLYHHDIINSISTC  416 (437)
T ss_dssp             -TTE-EEEEEGGGTEEEEEETTCGGGCEEEECC--CCCEEEEEEEETTEEEEEEECC-------------CCCEEEEEEE
T ss_pred             -Cce-EEEecCCCCeEEEEECCCcccceEEecccccCceEEEEEeecceEEEEEecccccccccCcccccccceeeEeee
Confidence             666 467999999999999987433221111000                      00001112233489999999999


Q ss_pred             cC-CCeEEEEecCCCCCCCCCCeEEEEE
Q 021657          253 AS-DPWTVVSVSDDCDSTGGGGTLQIWR  279 (309)
Q Consensus       253 ~~-~~~~~~s~s~d~~s~~~dg~v~vw~  279 (309)
                      ++ +..++++++.|       |.|+||+
T Consensus       417 ~~~~~~~l~s~~~d-------G~I~iw~  437 (437)
T 3gre_A          417 EVDETPLLVACDNS-------GLIGIFQ  437 (437)
T ss_dssp             ESSSSEEEEEEETT-------SCEEEEC
T ss_pred             ccCCceEEEEEcCC-------ceEEEeC
Confidence            97 35567766655       9999995

>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}

Probab=100.00  E-value=2e-32  Score=224.87  Aligned_cols=245  Identities=16%  Similarity=0.156  Sum_probs=182.9

Q ss_pred             CCCCCcceEEEEECC-CCCEEEEecCCCcEEEEeCCccccccccCCcc---cc-ccCCCCceeecCCCCCCCCcccCCCC
Q 021657            5 TGHQDNAEFALAMCP-TEPYVLSGGKDKSVVLWSIQDHITSSATDPAT---AK-SAGSSGSIIKQSPKPGDGNDKAADGP   79 (309)
Q Consensus         5 ~~H~~~~V~~~~~~~-~~~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~---~~-~~~~~~~~~~~~~~~~~~~~~~~~~~   79 (309)
                      .+|.. .|++++|+| ++.+|++++.||.|++||+.++..........   .. ..........+..+..++.+.+|+..
T Consensus        96 ~~~~~-~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~  174 (408)
T 4a11_B           96 DVHRY-SVETVQWYPHDTGMFTSSSFDKTLKVWDTNTLQTADVFNFEETVYSHHMSPVSTKHCLVAVGTRGPKVQLCDLK  174 (408)
T ss_dssp             TCCSS-CEEEEEECTTCTTCEEEEETTSEEEEEETTTTEEEEEEECSSCEEEEEECSSCSSCCEEEEEESSSSEEEEESS
T ss_pred             ccCCC-cEEEEEEccCCCcEEEEEeCCCeEEEeeCCCCccceeccCCCceeeeEeecCCCCCcEEEEEcCCCeEEEEeCC
Confidence            46888 899999999 78899999999999999998874333222111   11 11111111233444567899999999


Q ss_pred             CcCcccccccccCCeEEEEEecCCCcEEEEEcCCCeEEEEEcCCCCcceEEEe---------------eccCCceeEEEe
Q 021657           80 SVGPRGIYNGHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPVIKVE---------------KAHDADLHCVDW  144 (309)
Q Consensus        80 ~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~---------------~~~~~~v~~~~~  144 (309)
                      +.+.+..+.+|...|.+++|+|++..+|++++.||.|++||++..... ...+               ..|...|.+++|
T Consensus       175 ~~~~~~~~~~~~~~v~~~~~~~~~~~ll~~~~~dg~i~i~d~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~  253 (408)
T 4a11_B          175 SGSCSHILQGHRQEILAVSWSPRYDYILATASADSRVKLWDVRRASGC-LITLDQHNGKKSQAVESANTAHNGKVNGLCF  253 (408)
T ss_dssp             SSCCCEEECCCCSCEEEEEECSSCTTEEEEEETTSCEEEEETTCSSCC-SEECCTTTTCSCCCTTTSSCSCSSCEEEEEE
T ss_pred             CcceeeeecCCCCcEEEEEECCCCCcEEEEEcCCCcEEEEECCCCCcc-cccccccccccceeeccccccccCceeEEEE
Confidence            999999999999999999999998557999999999999999876532 2222               578899999999


Q ss_pred             ccCCCCeEEEEcCCCcEEEEecCCCCCCCCCCceeeeccC-----CCCeeEEEEecCCCcEEEEecCCCcEEEEeCCccc
Q 021657          145 NPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGH-----SAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVG  219 (309)
Q Consensus       145 ~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~-----~~~v~~~~~~~~~~~l~~~~~~dg~i~iwd~~~~~  219 (309)
                      +| ++++|++++.||.|++||+++      ++....+..+     ...+........+.. ++.++.|+.|++||+..  
T Consensus       254 ~~-~~~~l~~~~~dg~i~vwd~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~i~v~d~~~--  323 (408)
T 4a11_B          254 TS-DGLHLLTVGTDNRMRLWNSSN------GENTLVNYGKVCNNSKKGLKFTVSCGCSSE-FVFVPYGSTIAVYTVYS--  323 (408)
T ss_dssp             CT-TSSEEEEEETTSCEEEEETTT------CCBCCCCCCCCCCCCSSCCCCEECCSSSSC-EEEEEETTEEEEEETTT--
T ss_pred             cC-CCCEEEEecCCCeEEEEECCC------CccceeccccccccccccceeEEecCCCce-EEEEecCCEEEEEECcC--
Confidence            99 999999999999999999998      4444333221     111222222223333 45677799999999987  


Q ss_pred             ccccCCCCCcCCCCceeeeecCCCcceeeEEEccCCCeEEEEecCCCCCCCCCCeEEEEEccc
Q 021657          220 KKVEQGPRTTNYPAGLFFQHAGHRDKVVDFHWNASDPWTVVSVSDDCDSTGGGGTLQIWRMSD  282 (309)
Q Consensus       220 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~s~d~~s~~~dg~v~vw~~~~  282 (309)
                                   ...+..+.+|...|.+++|+|++.+++        +|+.||.|++||+..
T Consensus       324 -------------~~~~~~~~~~~~~v~~~~~s~~~~~l~--------s~~~dg~i~iw~~~~  365 (408)
T 4a11_B          324 -------------GEQITMLKGHYKTVDCCVFQSNFQELY--------SGSRDCNILAWVPSL  365 (408)
T ss_dssp             -------------CCEEEEECCCSSCEEEEEEETTTTEEE--------EEETTSCEEEEEECC
T ss_pred             -------------CcceeeeccCCCeEEEEEEcCCCCEEE--------EECCCCeEEEEeCCC
Confidence                         456677889999999999999887655        444559999999994

>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A

Probab=100.00  E-value=2.4e-32  Score=224.23  Aligned_cols=227  Identities=18%  Similarity=0.291  Sum_probs=177.2

Q ss_pred             EEEEECCCCCEE-EEecCCCcEEEEeCCccccccccCCccccccCCCCceeecCCCCCCCCcccCCCCCcCccccccccc
Q 021657           13 FALAMCPTEPYV-LSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHE   91 (309)
Q Consensus        13 ~~~~~~~~~~~l-~t~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   91 (309)
                      ..++++|+...+ ++++.||.|+||++......                                    ......+.+|.
T Consensus        38 ~~~~~~~~~~~~~~~~~~~g~i~v~~~~~~~~~------------------------------------~~~~~~~~~h~   81 (402)
T 2aq5_A           38 GFCAVNPKFMALICEASGGGAFLVLPLGKTGRV------------------------------------DKNVPLVCGHT   81 (402)
T ss_dssp             CSEEECSSEEEEEBCCSSSCCEEEEETTCCEEC------------------------------------CTTCCCBCCCS
T ss_pred             CcEEECCCeEEEEEEEcCCCEEEEEECccCCCC------------------------------------CCCCceEecCC
Confidence            467888876544 46899999999998642110                                    12234567899


Q ss_pred             CCeEEEEEec-CCCcEEEEEcCCCeEEEEEcCCCCc-----ceEEEeeccCCceeEEEeccCCC-CeEEEEcCCCcEEEE
Q 021657           92 DTVEDVTFCP-SSAQEFCSVGDDSCLILWDARVGTS-----PVIKVEKAHDADLHCVDWNPLDD-NLILTGSADNSVRMF  164 (309)
Q Consensus        92 ~~v~~~~~~~-~~~~~l~s~~~dg~i~iwd~~~~~~-----~~~~~~~~~~~~v~~~~~~~~~~-~~l~~~~~dg~i~i~  164 (309)
                      +.|++++|+| ++ .+|++|+.||.|++||+.++..     .....+.+|...|.+++|+| ++ ++|++++.||.|++|
T Consensus        82 ~~V~~~~~~p~~~-~~l~s~s~dg~v~vw~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p-~~~~~l~s~~~dg~i~iw  159 (402)
T 2aq5_A           82 APVLDIAWCPHND-NVIASGSEDCTVMVWEIPDGGLVLPLREPVITLEGHTKRVGIVAWHP-TAQNVLLSAGCDNVILVW  159 (402)
T ss_dssp             SCEEEEEECTTCT-TEEEEEETTSEEEEEECCTTCCSSCBCSCSEEEECCSSCEEEEEECS-SBTTEEEEEETTSCEEEE
T ss_pred             CCEEEEEeCCCCC-CEEEEEeCCCeEEEEEccCCCCccccCCceEEecCCCCeEEEEEECc-CCCCEEEEEcCCCEEEEE
Confidence            9999999999 65 8999999999999999988732     24667789999999999999 66 799999999999999


Q ss_pred             ecCCCCCCCCCCceeee--ccCCCCeeEEEEecCCCcEEEEecCCCcEEEEeCCcccccccCCCCCcCCCCceeeee-cC
Q 021657          165 DRRNLTSNGVGSPINKF--EGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQH-AG  241 (309)
Q Consensus       165 d~~~~~~~~~~~~~~~~--~~~~~~v~~~~~~~~~~~l~~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~-~~  241 (309)
                      |+++      ++.+..+  ..|...|.+++|+|++.. |++++.|+.|++||++.               ...+..+ .+
T Consensus       160 d~~~------~~~~~~~~~~~~~~~v~~~~~~~~~~~-l~~~~~d~~i~iwd~~~---------------~~~~~~~~~~  217 (402)
T 2aq5_A          160 DVGT------GAAVLTLGPDVHPDTIYSVDWSRDGAL-ICTSCRDKRVRVIEPRK---------------GTVVAEKDRP  217 (402)
T ss_dssp             ETTT------TEEEEEECTTTCCSCEEEEEECTTSSC-EEEEETTSEEEEEETTT---------------TEEEEEEECS
T ss_pred             ECCC------CCccEEEecCCCCCceEEEEECCCCCE-EEEEecCCcEEEEeCCC---------------CceeeeeccC
Confidence            9998      8888888  789999999999999996 56999999999999987               3344555 57


Q ss_pred             CCcc-eeeEEEccCCCeEEEEecCCCCCCCCCCeEEEEEccccccCChhhHhHhhh-cccceEEEeeeCC
Q 021657          242 HRDK-VVDFHWNASDPWTVVSVSDDCDSTGGGGTLQIWRMSDLIYRPQDEVLAELE-KFKAHVISCTSKP  309 (309)
Q Consensus       242 ~~~~-v~~~~~~~~~~~~~~s~s~d~~s~~~dg~v~vw~~~~~~~~~~~~~~~~~~-~h~~~v~~~~~~P  309 (309)
                      |... +..+.|+|++. +++++.    +.+.|+.|++||+....     .++.... .|...|.+++|+|
T Consensus       218 ~~~~~~~~~~~~~~~~-~l~~g~----~~~~d~~i~iwd~~~~~-----~~~~~~~~~~~~~v~~~~~s~  277 (402)
T 2aq5_A          218 HEGTRPVHAVFVSEGK-ILTTGF----SRMSERQVALWDTKHLE-----EPLSLQELDTSSGVLLPFFDP  277 (402)
T ss_dssp             SCSSSCCEEEECSTTE-EEEEEE----CTTCCEEEEEEETTBCS-----SCSEEEECCCCSSCEEEEEET
T ss_pred             CCCCcceEEEEcCCCc-EEEEec----cCCCCceEEEEcCcccc-----CCceEEeccCCCceeEEEEcC
Confidence            7765 89999999766 455441    11455999999998421     1122222 4667788888876

>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}

Probab=100.00  E-value=7e-32  Score=222.24  Aligned_cols=221  Identities=9%  Similarity=0.082  Sum_probs=166.7

Q ss_pred             CCCCcceEEEEECCCCCEEEEecCCCcEEEEeCCccccccccCCccccccCCCCceeecCCCCCCCCcccCCCCCcCccc
Q 021657            6 GHQDNAEFALAMCPTEPYVLSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRG   85 (309)
Q Consensus         6 ~H~~~~V~~~~~~~~~~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   85 (309)
                      +|.+ .|.+++|||+|++||+++.||.|+|||.+.                                          .+.
T Consensus        83 ~~~~-~V~~vawSPdG~~LAs~s~dg~V~iwd~~~------------------------------------------~l~  119 (588)
T 2j04_A           83 QPVC-YPRVCKPSPIDDWMAVLSNNGNVSVFKDNK------------------------------------------MLT  119 (588)
T ss_dssp             SCSC-CEEEEEECSSSSCEEEEETTSCEEEEETTE------------------------------------------EEE
T ss_pred             CCCC-cEEEEEECCCCCEEEEEeCCCcEEEEeCCc------------------------------------------eee
Confidence            5655 899999999999999999999999999653                                          122


Q ss_pred             ccccccC-----CeEEEEEecCCCcEEEEEcCCCeEEEEEcCCCCc--c---eEEEe----eccCCceeEEEeccCCCCe
Q 021657           86 IYNGHED-----TVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTS--P---VIKVE----KAHDADLHCVDWNPLDDNL  151 (309)
Q Consensus        86 ~~~~~~~-----~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~--~---~~~~~----~~~~~~v~~~~~~~~~~~~  151 (309)
                      .+. |..     .|.+++|+|+| ++|++|+.||+|+|||+.++..  +   ....+    .+|...|.+++|+| ++  
T Consensus       120 ~l~-~~~~~~~~sv~svafSPDG-~~LAsgs~DGtVkIWd~~~~~l~~~~~i~l~ti~~~~~gh~~~V~sVawSP-dg--  194 (588)
T 2j04_A          120 NLD-SKGNLSSRTYHCFEWNPIE-SSIVVGNEDGELQFFSIRKNSENTPEFYFESSIRLSDAGSKDWVTHIVWYE-DV--  194 (588)
T ss_dssp             ECC-CSSCSTTTCEEEEEECSSS-SCEEEEETTSEEEEEECCCCTTTCCCCEEEEEEECSCTTCCCCEEEEEEET-TE--
T ss_pred             ecc-CCCccccccEEEEEEcCCC-CEEEEEcCCCEEEEEECCCCccccccceeeeeeecccccccccEEEEEEcC-Cc--
Confidence            333 443     59999999999 8999999999999999987652  1   23444    56778999999999 77  


Q ss_pred             EEEEcCCCcEEEEecCCCCCCCCCC---ceeee-ccCCCCeeEEEEecCCCcEEEEecCCCcEEEEeCCcccccccCCCC
Q 021657          152 ILTGSADNSVRMFDRRNLTSNGVGS---PINKF-EGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPR  227 (309)
Q Consensus       152 l~~~~~dg~i~i~d~~~~~~~~~~~---~~~~~-~~~~~~v~~~~~~~~~~~l~~~~~~dg~i~iwd~~~~~~~~~~~~~  227 (309)
                      +++++.|+.|++||+..      ..   ..+++ .+|...|.+++|+  +. .+|+++ ++.|++||+..          
T Consensus       195 Laass~D~tVrlWd~~~------~~~~~~~~tL~~~h~~~V~svaFs--g~-~LASa~-~~tIkLWd~~~----------  254 (588)
T 2j04_A          195 LVAALSNNSVFSMTVSA------SSHQPVSRMIQNASRRKITDLKIV--DY-KVVLTC-PGYVHKIDLKN----------  254 (588)
T ss_dssp             EEEEETTCCEEEECCCS------SSSCCCEEEEECCCSSCCCCEEEE--TT-EEEEEC-SSEEEEEETTT----------
T ss_pred             EEEEeCCCeEEEEECCC------CccccceeeecccccCcEEEEEEE--CC-EEEEEe-CCeEEEEECCC----------
Confidence            88888999999999987      44   23456 4678899999999  55 466777 69999999987          


Q ss_pred             CcCCCCceeeeecCCCcceeeEEE--ccCCCeEEEEecCCCCCCCCCCeEEEEEccccccCChh----------------
Q 021657          228 TTNYPAGLFFQHAGHRDKVVDFHW--NASDPWTVVSVSDDCDSTGGGGTLQIWRMSDLIYRPQD----------------  289 (309)
Q Consensus       228 ~~~~~~~~~~~~~~~~~~v~~~~~--~~~~~~~~~s~s~d~~s~~~dg~v~vw~~~~~~~~~~~----------------  289 (309)
                           ........+|...|.+++|  +|++.. ++       +++.||+ ++|..+.....+.+                
T Consensus       255 -----~~~~~~~~gh~~~V~~va~~~s~d~~~-La-------~a~edG~-klw~~d~~~~spd~~l~a~~d~~v~lW~~~  320 (588)
T 2j04_A          255 -----YSISSLKTGSLENFHIIPLNHEKESTI-LL-------MSNKTSY-KVLLEDELHVTADNIIAPYLEKKFKKWSTI  320 (588)
T ss_dssp             -----TEEEEEECSCCSCCCEEEETTCSSCEE-EE-------ECSSCEE-EEEESSSEEEECCCSSHHHHHHHHHHTTTT
T ss_pred             -----CeEEEEEcCCCceEEEEEeeeCCCCCE-EE-------EEcCCCC-EEEeeccEEECCCceEEEEcCCEEEEEECC
Confidence                 2221223379999999999  998765 44       4445599 99997543322222                


Q ss_pred             -hHhHhhhcccceEEEeeeCC
Q 021657          290 -EVLAELEKFKAHVISCTSKP  309 (309)
Q Consensus       290 -~~~~~~~~h~~~v~~~~~~P  309 (309)
                       ..+..+++ ...|.+++|+|
T Consensus       321 g~~l~~~~~-~~~I~~va~SP  340 (588)
T 2j04_A          321 WNEFNNYET-TLVIHGISLSP  340 (588)
T ss_dssp             TTSSSSSCC-EEEEEEEEECT
T ss_pred             CCceeeecc-ceEEEEEEECC
Confidence             11222333 55799999998

>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}

Probab=100.00  E-value=1.5e-31  Score=212.47  Aligned_cols=259  Identities=19%  Similarity=0.260  Sum_probs=200.5

Q ss_pred             eEEEEECCCCCEEEEecCCCcEEEEeCCccccccccC----C--ccccccCCCCceeecCCCCCCCCcccCCCCCcCccc
Q 021657           12 EFALAMCPTEPYVLSGGKDKSVVLWSIQDHITSSATD----P--ATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRG   85 (309)
Q Consensus        12 V~~~~~~~~~~~l~t~~~dg~i~vwd~~~~~~~~~~~----~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   85 (309)
                      .++|+||+++ +||+| .|++|+|||++++.......    .  ..........  ..+..+..++.+++|+..+.+.+.
T Consensus        28 ~~~l~WS~~~-~lAvg-~D~tV~iWd~~tg~~~~~~~~~~~~~~V~~v~~~~~~--~~l~sgs~Dg~v~iw~~~~~~~~~  103 (318)
T 4ggc_A           28 LNLVDWSSGN-VLAVA-LDNSVYLWSASSGDILQLLQMEQPGEYISSVAWIKEG--NYLAVGTSSAEVQLWDVQQQKRLR  103 (318)
T ss_dssp             CBCEEECTTS-EEEEE-ETTEEEEEETTTCCEEEEEECCSTTCCEEEEEECTTS--SEEEEEETTSEEEEEETTTTEEEE
T ss_pred             ceEEEECCCC-EEEEE-eCCEEEEEECCCCCEEEEEEecCCCCeEEEEEECCCC--CEEEEEECCCcEEEeecCCceeEE
Confidence            4679999886 67665 59999999999875432221    1  1111222222  233445678899999999999999


Q ss_pred             ccccccCCeEEEEEecCCCcEEEEEcCCCeEEEEEcCCCCcceEEEeeccCCceeEEEeccCCCCeEEEEcCCCcEEEEe
Q 021657           86 IYNGHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFD  165 (309)
Q Consensus        86 ~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d  165 (309)
                      .+.+|...+.++.+.  + .++++++.++.+++|+...... ....+.+|...+..+.+.+ +++++++++.|+.|++||
T Consensus       104 ~~~~h~~~~~~~~~~--~-~~l~s~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~-~~~~l~s~~~d~~i~iwd  178 (318)
T 4ggc_A          104 NMTSHSARVGSLSWN--S-YILSSGSRSGHIHHHDVRVAEH-HVATLSGHSQEVCGLRWAP-DGRHLASGGNDNLVNVWP  178 (318)
T ss_dssp             EEECCSSCEEEEEEE--T-TEEEEEETTSEEEEEETTSSSC-EEEEEECCSSCEEEEEECT-TSSEEEEEETTSCEEEEE
T ss_pred             EecCccceEEEeecC--C-CEEEEEecCCceEeeecCCCce-eEEEEcCccCceEEEEEcC-CCCEEEEEecCcceeEEE
Confidence            999999998876654  3 6799999999999999877653 5667789999999999999 999999999999999999


Q ss_pred             cCCCCCCCCCCceeeeccCCCCeeEEEEecCCCcEE--EEecCCCcEEEEeCCcccccccCCCCCcCCCCceeeeecCCC
Q 021657          166 RRNLTSNGVGSPINKFEGHSAAVLCVQWSPDKSSVF--GSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHR  243 (309)
Q Consensus       166 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~--~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  243 (309)
                      +++.+..  .........+...|.+++++|++..++  ++++.++.|++||.+...                ......+.
T Consensus       179 ~~~~~~~--~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~i~lwd~~~~~----------------~~~~~~~~  240 (318)
T 4ggc_A          179 SAPGEGG--WVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGA----------------CLSAVDAH  240 (318)
T ss_dssp             SSCBTTB--SCCSEEECCCCSCEEEEEECTTSTTEEEEEECTTTCEEEEEETTTCC----------------EEEEEECS
T ss_pred             CCCCccc--ccceeeecccCCceEEEEecCCCCcEEEEEecCCCCEEEEEeccccc----------------ccccccce
Confidence            9873211  223445566788999999999888765  466788999999988721                22334567


Q ss_pred             cceeeEEEccCCCeEEEEecCCCCCCCCCCeEEEEEccccccCChhhHhHhhhcccceEEEeeeCC
Q 021657          244 DKVVDFHWNASDPWTVVSVSDDCDSTGGGGTLQIWRMSDLIYRPQDEVLAELEKFKAHVISCTSKP  309 (309)
Q Consensus       244 ~~v~~~~~~~~~~~~~~s~s~d~~s~~~dg~v~vw~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~P  309 (309)
                      ..+..+.|+|++..++++      +|+.|+.|++||+.      +++++.++++|.+.|++++|+|
T Consensus       241 ~~v~~~~~~~~~~~~~~~------sg~~d~~i~iwd~~------~~~~~~~l~gH~~~V~~l~~sp  294 (318)
T 4ggc_A          241 SQVCSILWSPHYKELISG------HGFAQNQLVIWKYP------TMAKVAELKGHTSRVLSLTMSP  294 (318)
T ss_dssp             SCEEEEEEETTTTEEEEE------ECTTTCCEEEEETT------TCCEEEEECCCSSCEEEEEECT
T ss_pred             eeeeeeeecccccceEEE------EEcCCCEEEEEECC------CCcEEEEEcCCCCCEEEEEEcC
Confidence            789999999999887754      33456999999999      7888999999999999999997

>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}

Probab=100.00  E-value=1.8e-32  Score=241.21  Aligned_cols=220  Identities=20%  Similarity=0.336  Sum_probs=179.6

Q ss_pred             cccCCCCCcceEEEEECCC--CCEEEEecCCCcEEEEeCCccccccccCCccccccCCCCceeecCCCCCCCCcccCCCC
Q 021657            2 EILTGHQDNAEFALAMCPT--EPYVLSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGP   79 (309)
Q Consensus         2 ~~l~~H~~~~V~~~~~~~~--~~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   79 (309)
                      +.+.+|.+ +|++++|+|+  +++|++|+.||.|++||+.++.                                     
T Consensus        47 ~~l~~h~~-~V~~l~~s~~~~~~~l~s~s~Dg~I~vwd~~~~~-------------------------------------   88 (753)
T 3jro_A           47 DTLTGHEG-PVWRVDWAHPKFGTILASCSYDGKVLIWKEENGR-------------------------------------   88 (753)
T ss_dssp             EEECCCSS-CEEEEEECCTTSCSEEEEEETTSCEEEEEEETTE-------------------------------------
T ss_pred             eeccCCcC-ceEEEEecCCCCCCEEEEEeCCCeEEEEECCCCc-------------------------------------
Confidence            46789998 8999999988  9999999999999999987431                                     


Q ss_pred             CcCcccccccccCCeEEEEEecC--CCcEEEEEcCCCeEEEEEcCCCCcceEEEeeccCCceeEEEeccC----------
Q 021657           80 SVGPRGIYNGHEDTVEDVTFCPS--SAQEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPL----------  147 (309)
Q Consensus        80 ~~~~~~~~~~~~~~v~~~~~~~~--~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~----------  147 (309)
                       ......+.+|...|++++|+|+  + .++++|+.||.|++||++.+..........|...|.+++|+|.          
T Consensus        89 -~~~~~~~~~h~~~V~~v~~sp~~~~-~~l~sgs~dg~I~vwdl~~~~~~~~~~~~~~~~~v~~l~~~p~~~~~~~~~~~  166 (753)
T 3jro_A           89 -WSQIAVHAVHSASVNSVQWAPHEYG-PLLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEEDGEHNG  166 (753)
T ss_dssp             -EEEEEEECCCSSCEEEEEECCGGGC-SEEEEEETTSEEEEEECCSSSCCCCEEEECCSSCEEEEEECCCC---------
T ss_pred             -ccccccccCCCCCeEEEEECCCCCC-CEEEEEeCCCcEEEEEeecCCCcceeEeecCCCceEEEEecCccccccccccc
Confidence             1134556779999999999998  6 8899999999999999988754456667889999999999993          


Q ss_pred             --CCCeEEEEcCCCcEEEEecCCCCCCCCCCceeeeccCCCCeeEEEEecC---CCcEEEEecCCCcEEEEeCCcccccc
Q 021657          148 --DDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWSPD---KSSVFGSSAEDGLLNIWDYEKVGKKV  222 (309)
Q Consensus       148 --~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~---~~~l~~~~~~dg~i~iwd~~~~~~~~  222 (309)
                        ++.++++|+.||.|++||+++....  ......+.+|...|++++|+|+   +. ++++++.||.|++||++......
T Consensus       167 ~~d~~~l~sgs~dg~I~iwd~~~~~~~--~~~~~~~~~h~~~V~~l~~sp~~~~~~-~l~s~s~Dg~I~iwd~~~~~~~~  243 (753)
T 3jro_A          167 TKESRKFVTGGADNLVKIWKYNSDAQT--YVLESTLEGHSDWVRDVAWSPTVLLRS-YLASVSQDRTCIIWTQDNEQGPW  243 (753)
T ss_dssp             CGGGCCEEEEETTSCEEEEEEETTTTE--EEEEEEECCCSSCEEEEEECCCCSSSE-EEEEEESSSCEEEEEESSSSSCC
T ss_pred             CCCCCEEEEEECCCeEEEEeccCCccc--ceeeeeecCCCCcEEEEEeccCCCCCC-EEEEEecCCEEEEecCCCCCCcc
Confidence              3889999999999999999873110  1556778889999999999999   66 57799999999999998732211


Q ss_pred             cCCCCCcCCCCceeeeecCCCcceeeEEEccCCCeEEEEecCCCCCCCCCCeEEEEEccc
Q 021657          223 EQGPRTTNYPAGLFFQHAGHRDKVVDFHWNASDPWTVVSVSDDCDSTGGGGTLQIWRMSD  282 (309)
Q Consensus       223 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~s~d~~s~~~dg~v~vw~~~~  282 (309)
                                .........|...|++++|+|++.+++        +|+.||.|++|++..
T Consensus       244 ----------~~~~~~~~~~~~~v~~l~~spdg~~l~--------s~s~Dg~I~vwd~~~  285 (753)
T 3jro_A          244 ----------KKTLLKEEKFPDVLWRASWSLSGNVLA--------LSGGDNKVTLWKENL  285 (753)
T ss_dssp             ----------BCCBSSSSCCSSCCCCEEECTTTCCEE--------EECSSSCEECCBCCS
T ss_pred             ----------eeEEeccCCCCCceEEEEEcCCCCEEE--------EEcCCCEEEEEecCC
Confidence                      112334466888999999999888765        555569999999984

>4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A

Probab=100.00  E-value=1.4e-32  Score=224.60  Aligned_cols=209  Identities=14%  Similarity=0.162  Sum_probs=150.3

Q ss_pred             cccCCCCCcceEEEEECC--------CCCEEEEecCCCcEEEEeCCccccccccCCccccccCCCCceeecCCCCCCCCc
Q 021657            2 EILTGHQDNAEFALAMCP--------TEPYVLSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGND   73 (309)
Q Consensus         2 ~~l~~H~~~~V~~~~~~~--------~~~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   73 (309)
                      ..|+||.+ .|++++|+|        |+++||||+.|++|+|||+.+.                                
T Consensus       130 ~~~~gH~~-~v~~v~~~p~~~~~~~~d~~~las~s~D~tv~~Wd~~~~--------------------------------  176 (393)
T 4gq1_A          130 GGKSGHHN-FVNDIDIADVYSADNRLAEQVIASVGDDCTLIIWRLTDE--------------------------------  176 (393)
T ss_dssp             CTTTSCSS-CEEEEEEEEEECTTCSEEEEEEEEEETTSEEEEEEEETT--------------------------------
T ss_pred             cccCCCCC-ceEEEEEccccccccCCCCCEEEEEECCCeEEEEECCCC--------------------------------
Confidence            45889999 899999998        7899999999999999998632                                


Q ss_pred             ccCCCCCcCcccccccccCCeEEEEEecCCCcEEEEEcCCCeEEEEEcCCCCcce-----------------------EE
Q 021657           74 KAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPV-----------------------IK  130 (309)
Q Consensus        74 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~-----------------------~~  130 (309)
                              .++..+.+|...|.+++|+|++..+|++++.||+|++||+++++...                       ..
T Consensus       177 --------~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~d~~v~~wd~~t~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~  248 (393)
T 4gq1_A          177 --------GPILAGYPLSSPGISVQFRPSNPNQLIVGERNGNIRIFDWTLNLSAEENSQTELVKNPWLLTLNTLPLVNTC  248 (393)
T ss_dssp             --------EEEEEEEECSSCEEEEEEETTEEEEEEEEETTSEEEEEETTCCC----------CSCCCSEEEESGGGC---
T ss_pred             --------ceeeeecCCCCCcEEEEECCCCCceEEecCCCCEEEEEECCCCcccccccccCCcccceEEecccccceeee
Confidence                    23445667889999999999986789999999999999998765211                       01


Q ss_pred             EeeccCCceeEEEeccCCCCeEEEEcCCCcEEEEecCCCCCCCCCCceeeeccCCCCeeEE------------------E
Q 021657          131 VEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGHSAAVLCV------------------Q  192 (309)
Q Consensus       131 ~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~v~~~------------------~  192 (309)
                      ...+|...+.++.|++.++..+++++.|+++++||+..      ++....+..+...+..+                  .
T Consensus       249 ~~~~~~~~v~~v~~~~~dg~~l~s~s~d~~i~vwd~~~------~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  322 (393)
T 4gq1_A          249 HSSGIASSLANVRWIGSDGSGILAMCKSGAWLRWNLFA------NNDYNEISDSTMKLGPKNLLPNVQGISLFPSLLGAC  322 (393)
T ss_dssp             ---CCSSSCSEEEEETTTTCEEEEECTTSEEEEEEC-------------------------CCSCSEEEECSSCCSSCCE
T ss_pred             ecccccccceeeeeecCCCCEEEEEeCCCCEEEEECcc------CCCCceEeeecCccccEEEccccccccccCcceeEE
Confidence            12467788999999743899999999999999999987      44444443333332222                  2


Q ss_pred             Ee-cCCCcEEEEecCCCcEEEEeCCcccccccCCCCCcCCCCceeeeecCCCcceeeEEEccCCCeEEEEecCCCCCCCC
Q 021657          193 WS-PDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKVVDFHWNASDPWTVVSVSDDCDSTGG  271 (309)
Q Consensus       193 ~~-~~~~~l~~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~s~d~~s~~~  271 (309)
                      ++ +.+..++++|+.||.|++||+..               ........+|..+|.+++|+|++.+| |++++|      
T Consensus       323 ~~~~~~~~~~~sgs~Dg~V~lwd~~~---------------~~~~~~~~~~~~~V~svafspdG~~L-A~as~~------  380 (393)
T 4gq1_A          323 PHPRYMDYFATAHSQHGLIQLINTYE---------------KDSNSIPIQLGMPIVDFCWHQDGSHL-AIATEG------  380 (393)
T ss_dssp             ECSSCTTEEEEEETTTTEEEEEETTC---------------TTCCEEEEECSSCEEEEEECTTSSEE-EEEESS------
T ss_pred             EccCCCCEEEEEECCCCEEEEEECCC---------------CcEEEEecCCCCcEEEEEEcCCCCEE-EEEeCC------
Confidence            33 33444677899999999999987               33345566788899999999998864 555554      


Q ss_pred             CCeEEEEEcc
Q 021657          272 GGTLQIWRMS  281 (309)
Q Consensus       272 dg~v~vw~~~  281 (309)
                        .+.+|++.
T Consensus       381 --Gv~lvrL~  388 (393)
T 4gq1_A          381 --SVLLTRLM  388 (393)
T ss_dssp             --EEEEEEEG
T ss_pred             --CeEEEEEe
Confidence              68888876

>2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A

Probab=100.00  E-value=8.9e-32  Score=208.63  Aligned_cols=215  Identities=13%  Similarity=0.132  Sum_probs=156.9

Q ss_pred             ceEEEEECCC----CCEEEEecCCCcEEEEeCCccccccccCCccccccCCCCceeecCCCCCCCCcccCCC-CCcCccc
Q 021657           11 AEFALAMCPT----EPYVLSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADG-PSVGPRG   85 (309)
Q Consensus        11 ~V~~~~~~~~----~~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~   85 (309)
                      .|++++|+|+    ++++++++.+  +++|++.++...                  .......+..+++|+. ..++.+.
T Consensus       113 ~v~sla~spd~~~~~~~l~s~g~~--~~v~~l~~g~lv------------------~ss~~g~d~~V~~~~~s~dG~~~~  172 (356)
T 2w18_A          113 EIRALFCSSDDESEKQVLLKSGNI--KAVLGLTKRRLV------------------SSSGTLSDQQVEVMTFAEDGGGKE  172 (356)
T ss_dssp             EEEEECC------CCEEEEEEEEE--EEEEEETTTEEE------------------EEESSSTTCEEEEEEECTTSCEEE
T ss_pred             ceEEEEECCCccccccEEEeCCCe--EEEEecCCCcEE------------------EecccCCCCcEEEEEECCCCceee
Confidence            6888999999    8889988754  778887543221                  1111234667777777 3466777


Q ss_pred             ccccccCCeEEEEEec---CCCcEEEEEcCCCeEEEEEcCCCCcceEEEeeccC---CceeEEEeccCCCCeE-------
Q 021657           86 IYNGHEDTVEDVTFCP---SSAQEFCSVGDDSCLILWDARVGTSPVIKVEKAHD---ADLHCVDWNPLDDNLI-------  152 (309)
Q Consensus        86 ~~~~~~~~v~~~~~~~---~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~---~~v~~~~~~~~~~~~l-------  152 (309)
                      .+..|...++.++|++   ++ .+|++++.|++|+|||+.+++  ....+.+|.   ..+.+++|+| ++.++       
T Consensus       173 s~~~~~~~v~~l~fs~~~g~~-~~LaSgS~D~TIkIWDl~TGk--~l~tL~g~~~~v~~v~~vafSp-dG~~lvs~s~~~  248 (356)
T 2w18_A          173 NQFLMPPEETILTFAEVQGMQ-EALLGTTIMNNIVIWNLKTGQ--LLKKMHIDDSYQASVCHKAYSE-MGLLFIVLSHPC  248 (356)
T ss_dssp             EEEECCCSSCEEEEEEEETST-TEEEEEETTSEEEEEETTTCC--EEEEEECCC---CCCEEEEEEE-TTEEEEEEC---
T ss_pred             eeccCCCceeeEEeeccCCCC-ceEEEecCCCcEEEEECCCCc--EEEEEcCCCcceeeeEEEEECC-CCCEEEEeccCC
Confidence            7889999999999998   55 889999999999999999998  677776654   3677789999 88876       


Q ss_pred             -----EEEcCCCcEEEEecCCCCCCCCCCceeee-----ccCCCCeeEEEEecCCCcEEEEecCCCcEEEEeCCcccccc
Q 021657          153 -----LTGSADNSVRMFDRRNLTSNGVGSPINKF-----EGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKV  222 (309)
Q Consensus       153 -----~~~~~dg~i~i~d~~~~~~~~~~~~~~~~-----~~~~~~v~~~~~~~~~~~l~~~~~~dg~i~iwd~~~~~~~~  222 (309)
                           ++|+.|++|++||..+      ++.+..+     .+|...+.+..++  +. ++|+++.|++|+|||+.+     
T Consensus       249 ~~w~laSGs~D~tIklWd~~t------gk~l~v~~~~~p~Gh~~~~lsg~~s--g~-~lASgS~DgTIkIWDl~t-----  314 (356)
T 2w18_A          249 AKESESLRSPVFQLIVINPKT------TLSVGVMLYCLPPGQAGRFLEGDVK--DH-CAAAILTSGTIAIWDLLL-----  314 (356)
T ss_dssp             ---------CCEEEEEEETTT------TEEEEEEEECCCTTCCCCEEEEEEE--TT-EEEEEETTSCEEEEETTT-----
T ss_pred             CcceeeccCCCcEEEEEECCC------CEEEEEEEeeccCCCcceeEccccC--CC-EEEEEcCCCcEEEEECCC-----
Confidence                 5688899999999998      7766554     3555554444443  55 578999999999999998     


Q ss_pred             cCCCCCcCCCCceeeeecCCCccee-eEEEccCCCeEEEEecCCCCCCCCCCeEEEEEcc
Q 021657          223 EQGPRTTNYPAGLFFQHAGHRDKVV-DFHWNASDPWTVVSVSDDCDSTGGGGTLQIWRMS  281 (309)
Q Consensus       223 ~~~~~~~~~~~~~~~~~~~~~~~v~-~~~~~~~~~~~~~s~s~d~~s~~~dg~v~vw~~~  281 (309)
                                .+++..+.+|...+. .++|+|++.+|+        ||+.|++|+|||+.
T Consensus       315 ----------Gk~l~tL~gH~~~vvs~vafSPDG~~La--------SGS~D~TIklWd~~  356 (356)
T 2w18_A          315 ----------GQCTALLPPVSDQHWSFVKWSGTDSHLL--------AGQKDGNIFVYHYS  356 (356)
T ss_dssp             ----------CSEEEEECCC--CCCCEEEECSSSSEEE--------EECTTSCEEEEEEC
T ss_pred             ----------CcEEEEecCCCCCeEEEEEECCCCCEEE--------EEECCCcEEEecCC
Confidence                      556778888887665 589999988755        55556999999963

>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}

Probab=100.00  E-value=1.5e-31  Score=222.57  Aligned_cols=240  Identities=13%  Similarity=0.139  Sum_probs=159.6

Q ss_pred             ceEEEEECCCCCEEEEecCCCcEEEEeCCccc---cccccCCccc----cccC-CCCceeecCCCCCC---------CCc
Q 021657           11 AEFALAMCPTEPYVLSGGKDKSVVLWSIQDHI---TSSATDPATA----KSAG-SSGSIIKQSPKPGD---------GND   73 (309)
Q Consensus        11 ~V~~~~~~~~~~~l~t~~~dg~i~vwd~~~~~---~~~~~~~~~~----~~~~-~~~~~~~~~~~~~~---------~~~   73 (309)
                      ++++++|+|+|++|+++ .++.|++||+.++.   ..........    .... ..............         ...
T Consensus         6 p~~~v~~s~dg~~l~~~-~~~~i~v~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   84 (450)
T 2vdu_B            6 PLQNLLTSRDGSLVFAI-IKNCILSFKYQSPNHWEFAGKWSDDFDKIQESRNTTAKEQQGQSSENENENKKLKSNKGDSI   84 (450)
T ss_dssp             CCCEEEECSSSSEEEEE-ETTEEEEEEEETTTEEEEEEEEECCC------------------------------------
T ss_pred             cEEEEEecCCCCEEEEE-eCCeEEEEECCCCCcceeeeecCCccccccccccccchhhccccccccccccccccCcCccc
Confidence            68899999999966655 57899999998775   2221111000    0000 00000000000000         000


Q ss_pred             ccCCCCCcCcccccccccCCeEEEEEecCCCcEEEEEcCCCeEEEEEcC--CCCcceEEEee--ccCCceeEEEeccCCC
Q 021657           74 KAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDAR--VGTSPVIKVEK--AHDADLHCVDWNPLDD  149 (309)
Q Consensus        74 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~--~~~~~~~~~~~--~~~~~v~~~~~~~~~~  149 (309)
                      .........+.....+|...|++++|+|++..++++++.||.|++||+.  +++  ....+.  .|...|.+++|+| ++
T Consensus        85 ~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~~dg~v~iwd~~~~~~~--~~~~~~~~~~~~~v~~~~~sp-~~  161 (450)
T 2vdu_B           85 KRTAAKVPSPGLGAPPIYSYIRNLRLTSDESRLIACADSDKSLLVFDVDKTSKN--VLKLRKRFCFSKRPNAISIAE-DD  161 (450)
T ss_dssp             ---------------CCCCCEEEEEECTTSSEEEEEEGGGTEEEEEEECSSSSS--CEEEEEEEECSSCEEEEEECT-TS
T ss_pred             cccCccccCCCCCCCccCCceEEEEEcCCCCEEEEEECCCCeEEEEECcCCCCc--eeeeeecccCCCCceEEEEcC-CC
Confidence            0000000111223346778999999999994435999999999999998  665  444444  6778999999999 99


Q ss_pred             CeEEEEcCCCcEEEEecCCCCCCCCCC-ceeeeccCCCCeeEEEEecC---CCcEEEEecCCCcEEEEeCCcccccccCC
Q 021657          150 NLILTGSADNSVRMFDRRNLTSNGVGS-PINKFEGHSAAVLCVQWSPD---KSSVFGSSAEDGLLNIWDYEKVGKKVEQG  225 (309)
Q Consensus       150 ~~l~~~~~dg~i~i~d~~~~~~~~~~~-~~~~~~~~~~~v~~~~~~~~---~~~l~~~~~~dg~i~iwd~~~~~~~~~~~  225 (309)
                      .+|++++.+|.|++|++.+...   .. .+..+.+|...|++++|+|+   +++ |++++.|+.|++||++.        
T Consensus       162 ~~l~~~~~~g~v~~~~~~~~~~---~~~~~~~~~~h~~~v~~~~~sp~~~~~~~-l~s~~~d~~i~vwd~~~--------  229 (450)
T 2vdu_B          162 TTVIIADKFGDVYSIDINSIPE---EKFTQEPILGHVSMLTDVHLIKDSDGHQF-IITSDRDEHIKISHYPQ--------  229 (450)
T ss_dssp             SEEEEEETTSEEEEEETTSCCC---SSCCCCCSEECSSCEEEEEEEECTTSCEE-EEEEETTSCEEEEEESC--------
T ss_pred             CEEEEEeCCCcEEEEecCCccc---ccccceeeecccCceEEEEEcCCCCCCcE-EEEEcCCCcEEEEECCC--------
Confidence            9999999999999999987321   11 33477889999999999999   775 67999999999999986        


Q ss_pred             CCCcCCCCceeee-ecCCCcceeeEEEccCCCeEEEEecCCCCCCCCCCeEEEEEccc
Q 021657          226 PRTTNYPAGLFFQ-HAGHRDKVVDFHWNASDPWTVVSVSDDCDSTGGGGTLQIWRMSD  282 (309)
Q Consensus       226 ~~~~~~~~~~~~~-~~~~~~~v~~~~~~~~~~~~~~s~s~d~~s~~~dg~v~vw~~~~  282 (309)
                             ...+.. +.+|...|.+++|+ ++.+++ +++       .|+.|++||+..
T Consensus       230 -------~~~~~~~~~~h~~~v~~~~~s-d~~~l~-s~~-------~d~~v~vwd~~~  271 (450)
T 2vdu_B          230 -------CFIVDKWLFGHKHFVSSICCG-KDYLLL-SAG-------GDDKIFAWDWKT  271 (450)
T ss_dssp             -------TTCEEEECCCCSSCEEEEEEC-STTEEE-EEE-------SSSEEEEEETTT
T ss_pred             -------CceeeeeecCCCCceEEEEEC-CCCEEE-EEe-------CCCeEEEEECCC
Confidence                   223333 56899999999999 777655 444       459999999983

>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A

Probab=100.00  E-value=8.6e-32  Score=239.70  Aligned_cols=246  Identities=17%  Similarity=0.225  Sum_probs=195.2

Q ss_pred             cccCCCCCcceEEEEECCCCCEEEEecCCCcEEEEeCCccccccccC----CccccccCCCCceeecCCCCCCCCcccCC
Q 021657            2 EILTGHQDNAEFALAMCPTEPYVLSGGKDKSVVLWSIQDHITSSATD----PATAKSAGSSGSIIKQSPKPGDGNDKAAD   77 (309)
Q Consensus         2 ~~l~~H~~~~V~~~~~~~~~~~l~t~~~dg~i~vwd~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   77 (309)
                      +.+.+|.+ +|++++|+|++++|++|+.||.|+|||+.++.......    ............  .+..+..++.+.+|+
T Consensus        49 ~~~~~~~~-~v~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~v~~~~~s~~~~--~l~~~~~dg~i~vw~  125 (814)
T 3mkq_A           49 RSIQVTET-PVRAGKFIARKNWIIVGSDDFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKP--YVLSGSDDLTVKLWN  125 (814)
T ss_dssp             EEEECCSS-CEEEEEEEGGGTEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECSSSS--EEEEEETTSEEEEEE
T ss_pred             EEEecCCC-cEEEEEEeCCCCEEEEEeCCCeEEEEECCCCcEEEEEecCCCCEEEEEEeCCCC--EEEEEcCCCEEEEEE
Confidence            46778998 89999999999999999999999999998874433222    111112222222  222445678899999


Q ss_pred             CCCc-CcccccccccCCeEEEEEec-CCCcEEEEEcCCCeEEEEEcCCCCcceEEEeeccCCceeEEEeccC-CCCeEEE
Q 021657           78 GPSV-GPRGIYNGHEDTVEDVTFCP-SSAQEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPL-DDNLILT  154 (309)
Q Consensus        78 ~~~~-~~~~~~~~~~~~v~~~~~~~-~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~-~~~~l~~  154 (309)
                      ..+. .....+.+|...|.+++|+| ++ ..|++++.||.|++||+.++.. .......+...+.+++|+|. ++.++++
T Consensus       126 ~~~~~~~~~~~~~~~~~v~~~~~~p~~~-~~l~~~~~dg~v~vwd~~~~~~-~~~~~~~~~~~v~~~~~~~~~~~~~l~~  203 (814)
T 3mkq_A          126 WENNWALEQTFEGHEHFVMCVAFNPKDP-STFASGCLDRTVKVWSLGQSTP-NFTLTTGQERGVNYVDYYPLPDKPYMIT  203 (814)
T ss_dssp             GGGTSEEEEEEECCSSCEEEEEEETTEE-EEEEEEETTSEEEEEETTCSSC-SEEEECCCTTCCCEEEECCSTTCCEEEE
T ss_pred             CCCCceEEEEEcCCCCcEEEEEEEcCCC-CEEEEEeCCCeEEEEECCCCcc-eeEEecCCCCCEEEEEEEECCCCCEEEE
Confidence            8876 56677889999999999999 55 8999999999999999987763 22333344588999999873 5679999


Q ss_pred             EcCCCcEEEEecCCCCCCCCCCceeeeccCCCCeeEEEEecCCCcEEEEecCCCcEEEEeCCcccccccCCCCCcCCCCc
Q 021657          155 GSADNSVRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAG  234 (309)
Q Consensus       155 ~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~  234 (309)
                      ++.||.|++||+++      ++.+..+..|...|.+++|+|+++. +++++.||.|++||+..               ..
T Consensus       204 ~~~dg~i~~~d~~~------~~~~~~~~~~~~~v~~~~~~~~~~~-l~~~~~dg~v~vwd~~~---------------~~  261 (814)
T 3mkq_A          204 ASDDLTIKIWDYQT------KSCVATLEGHMSNVSFAVFHPTLPI-IISGSEDGTLKIWNSST---------------YK  261 (814)
T ss_dssp             ECTTSEEEEEETTT------TEEEEEEECCSSCEEEEEECSSSSE-EEEEETTSCEEEEETTT---------------CS
T ss_pred             EeCCCEEEEEECCC------CcEEEEEcCCCCCEEEEEEcCCCCE-EEEEeCCCeEEEEECCC---------------Cc
Confidence            99999999999998      8889999999999999999999995 67999999999999987               34


Q ss_pred             eeeeecCCCcceeeEEEccCCCeE-EEEecCCCCCCCCCCeEEEEEccc
Q 021657          235 LFFQHAGHRDKVVDFHWNASDPWT-VVSVSDDCDSTGGGGTLQIWRMSD  282 (309)
Q Consensus       235 ~~~~~~~~~~~v~~~~~~~~~~~~-~~s~s~d~~s~~~dg~v~vw~~~~  282 (309)
                      ....+..|...+.+++|+|++..+ +++++ |       +.+.+|++..
T Consensus       262 ~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~-~-------~~~~~~~~~~  302 (814)
T 3mkq_A          262 VEKTLNVGLERSWCIATHPTGRKNYIASGF-D-------NGFTVLSLGN  302 (814)
T ss_dssp             EEEEECCSSSSEEEEEECTTCGGGEEEEEE-T-------TEEEEEECSC
T ss_pred             EEEEeecCCCcEEEEEEccCCCceEEEEEe-C-------CCEEEEEcCC
Confidence            566778888999999999998765 44333 3       6788888763

>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}

Probab=100.00  E-value=4.7e-31  Score=219.44  Aligned_cols=259  Identities=14%  Similarity=0.197  Sum_probs=179.5

Q ss_pred             cccCCCC------------CcceEEEEECCCC--CEEEEecCCCcEEEEeCCccccc-----------------------
Q 021657            2 EILTGHQ------------DNAEFALAMCPTE--PYVLSGGKDKSVVLWSIQDHITS-----------------------   44 (309)
Q Consensus         2 ~~l~~H~------------~~~V~~~~~~~~~--~~l~t~~~dg~i~vwd~~~~~~~-----------------------   44 (309)
                      ..+++|.            + .|++++|+|++  .+|++++.||+|++||+.+....                       
T Consensus        75 ~~~~~h~~~~~~~~~~~~~~-~V~~l~~~~~~~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~  153 (447)
T 3dw8_B           75 STFQSHEPEFDYLKSLEIEE-KINKIRWLPQKNAAQFLLSTNDKTIKLWKISERDKRPEGYNLKEEDGRYRDPTTVTTLR  153 (447)
T ss_dssp             EEEECCCCEEEGGGTEEECC-CCCEEEECCCCSSSEEEEEECSSCEEEEEEEEEEEEEECCSCC--------CCCCCSCC
T ss_pred             cccccccccccccccccccC-ceEEEEEcCCCCcceEEEeCCCCeEEEEecccccCCcceecccCccccccCcccccceE
Confidence            3577887            6 79999999998  79999999999999999764221                       


Q ss_pred             ---------------------cccCCccccccCCCCceeecCCCCCCCCcccCCCCC-cCccc-------ccccccCCeE
Q 021657           45 ---------------------SATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPS-VGPRG-------IYNGHEDTVE   95 (309)
Q Consensus        45 ---------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~-------~~~~~~~~v~   95 (309)
                                           ....................  + .++.+.+|+... .+...       .+.+|...|+
T Consensus       154 ~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s--~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~  230 (447)
T 3dw8_B          154 VPVFRPMDLMVEASPRRIFANAHTYHINSISINSDYETYLS--A-DDLRINLWHLEITDRSFNIVDIKPANMEELTEVIT  230 (447)
T ss_dssp             CCEEEEEEEEEEEEEEEEECSCCSSCCCEEEECTTSSEEEE--E-CSSEEEEEETTEEEEEEEEEECCCSSGGGCCCCEE
T ss_pred             eccccchheeeeccceEEeccCCCcceEEEEEcCCCCEEEE--e-CCCeEEEEECCCCCceeeeeecccccccccCcceE
Confidence                                 01111111112222222222  3 588999999984 33333       4678999999


Q ss_pred             EEEEecCCCcEEEEEcCCCeEEEEEcCCCCcc--eEEEeeccCC------------ceeEEEeccCCCCeEEEEcCCCcE
Q 021657           96 DVTFCPSSAQEFCSVGDDSCLILWDARVGTSP--VIKVEKAHDA------------DLHCVDWNPLDDNLILTGSADNSV  161 (309)
Q Consensus        96 ~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~--~~~~~~~~~~------------~v~~~~~~~~~~~~l~~~~~dg~i  161 (309)
                      +++|+|++..+|++|+.||.|++||+++++..  ....+..|..            .|.+++|+| ++++|++++. +.|
T Consensus       231 ~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~-~g~~l~~~~~-~~v  308 (447)
T 3dw8_B          231 AAEFHPNSCNTFVYSSSKGTIRLCDMRASALCDRHSKLFEEPEDPSNRSFFSEIISSISDVKFSH-SGRYMMTRDY-LSV  308 (447)
T ss_dssp             EEEECSSCTTEEEEEETTSCEEEEETTTCSSSCTTCEEECCC-----CCHHHHHTTCEEEEEECT-TSSEEEEEES-SEE
T ss_pred             EEEECCCCCcEEEEEeCCCeEEEEECcCCccccceeeEeccCCCccccccccccCceEEEEEECC-CCCEEEEeeC-CeE
Confidence            99999997678999999999999999887721  1466667765            899999999 9999999998 999


Q ss_pred             EEEecCCCCCCCCCCceeeeccCCCC---------------eeEEEEecCCCcEEEEecCCCcEEEEeCCcccccccCCC
Q 021657          162 RMFDRRNLTSNGVGSPINKFEGHSAA---------------VLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGP  226 (309)
Q Consensus       162 ~i~d~~~~~~~~~~~~~~~~~~~~~~---------------v~~~~~~~~~~~l~~~~~~dg~i~iwd~~~~~~~~~~~~  226 (309)
                      ++||+++.     ++++..+..|...               +..++|+|++++ |++|+.||.|++||+...........
T Consensus       309 ~iwd~~~~-----~~~~~~~~~~~~~~~~l~~~~~~~~i~~~~~~~~s~~~~~-l~s~s~dg~v~iwd~~~~~~~~~~~~  382 (447)
T 3dw8_B          309 KVWDLNME-----NRPVETYQVHEYLRSKLCSLYENDCIFDKFECCWNGSDSV-VMTGSYNNFFRMFDRNTKRDITLEAS  382 (447)
T ss_dssp             EEEETTCC-----SSCSCCEESCGGGTTTHHHHHHTSGGGCCCCEEECTTSSE-EEEECSTTEEEEEETTTCCEEEEECC
T ss_pred             EEEeCCCC-----ccccceeeccccccccccccccccccccceEEEECCCCCE-EEEeccCCEEEEEEcCCCcceeeeec
Confidence            99999863     5567777766432               234999999996 57999999999999987332211000


Q ss_pred             CCcC-----------------CCCceeeeecCCCcceeeEEEccCCCeEEEEecCCCCCCCCCCeEEEEEcc
Q 021657          227 RTTN-----------------YPAGLFFQHAGHRDKVVDFHWNASDPWTVVSVSDDCDSTGGGGTLQIWRMS  281 (309)
Q Consensus       227 ~~~~-----------------~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~s~d~~s~~~dg~v~vw~~~  281 (309)
                      ....                 ...........+...|..++|+|++..++ +++.+        .+++|.-+
T Consensus       383 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~la-~~~~~--------~~~~~~~~  445 (447)
T 3dw8_B          383 RENNKPRTVLKPRKVCASGKRKKDEISVDSLDFNKKILHTAWHPKENIIA-VATTN--------NLYIFQDK  445 (447)
T ss_dssp             STTCCTTCBCCCCCEECSSCCCTTCEEGGGCCTTSCCCEEEECSSSSEEE-EECSS--------CEEEEECC
T ss_pred             ccccccccccCCccccccCCcccccccccccccCCceeEEEECCCCCEEE-EEecc--------eeeeeccc
Confidence            0000                 00001111223456899999999988654 44433        58888754

>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A

Probab=99.97  E-value=8.2e-31  Score=210.39  Aligned_cols=236  Identities=13%  Similarity=0.064  Sum_probs=179.4

Q ss_pred             ccCCCCCcceEEEEECCCCC-EEEEecCCCcEEEEeC-CccccccccC---C--ccccccCCCCceeecCCCCCCCCccc
Q 021657            3 ILTGHQDNAEFALAMCPTEP-YVLSGGKDKSVVLWSI-QDHITSSATD---P--ATAKSAGSSGSIIKQSPKPGDGNDKA   75 (309)
Q Consensus         3 ~l~~H~~~~V~~~~~~~~~~-~l~t~~~dg~i~vwd~-~~~~~~~~~~---~--~~~~~~~~~~~~~~~~~~~~~~~~~~   75 (309)
                      .+.+|.. .|++++|+|+++ +|++|+.||.|++||+ .++.......   .  ........   ...+..+..++.+.+
T Consensus        51 ~~~~~~~-~v~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~v~~l~~~~---~~~l~s~~~d~~i~i  126 (342)
T 1yfq_A           51 QSLRYKH-PLLCCNFIDNTDLQIYVGTVQGEILKVDLIGSPSFQALTNNEANLGICRICKYG---DDKLIAASWDGLIEV  126 (342)
T ss_dssp             EEEECSS-CEEEEEEEESSSEEEEEEETTSCEEEECSSSSSSEEECBSCCCCSCEEEEEEET---TTEEEEEETTSEEEE
T ss_pred             eeeecCC-ceEEEEECCCCCcEEEEEcCCCeEEEEEeccCCceEeccccCCCCceEEEEeCC---CCEEEEEcCCCeEEE
Confidence            4557888 899999999999 9999999999999999 7663311111   1  11111111   112233456788999


Q ss_pred             CCCCC---------cCcccccccccCCeEEEEEecCCCcEEEEEcCCCeEEEEEcCC-CCcceEEEeeccCCceeEEEec
Q 021657           76 ADGPS---------VGPRGIYNGHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARV-GTSPVIKVEKAHDADLHCVDWN  145 (309)
Q Consensus        76 ~~~~~---------~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~-~~~~~~~~~~~~~~~v~~~~~~  145 (309)
                      |+..+         .+++..+. |...|.+++|+|++   +++++.|+.|++||+++ ...........|...+.+++|+
T Consensus       127 wd~~~~~~~~~~~~~~~~~~~~-~~~~v~~~~~~~~~---l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~i~~i~~~  202 (342)
T 1yfq_A          127 IDPRNYGDGVIAVKNLNSNNTK-VKNKIFTMDTNSSR---LIVGMNNSQVQWFRLPLCEDDNGTIEESGLKYQIRDVALL  202 (342)
T ss_dssp             ECHHHHTTBCEEEEESCSSSSS-SCCCEEEEEECSSE---EEEEESTTEEEEEESSCCTTCCCEEEECSCSSCEEEEEEC
T ss_pred             EcccccccccccccCCeeeEEe-eCCceEEEEecCCc---EEEEeCCCeEEEEECCccccccceeeecCCCCceeEEEEC
Confidence            99887         77777776 88999999999865   89999999999999988 5544455666788999999999


Q ss_pred             cCCCCeEEEEcCCCcEEEEecCCCCCCCCCCceeeeccCCC---------CeeEEEEecCCCcEEEEecCCCcEEEEeCC
Q 021657          146 PLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGHSA---------AVLCVQWSPDKSSVFGSSAEDGLLNIWDYE  216 (309)
Q Consensus       146 ~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~---------~v~~~~~~~~~~~l~~~~~~dg~i~iwd~~  216 (309)
                      |.+++++++++.||.|++||++........+.+..+..|..         .|.+++|+|++++ |++++.||.|++||++
T Consensus       203 ~~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~-l~~~~~dg~i~vwd~~  281 (342)
T 1yfq_A          203 PKEQEGYACSSIDGRVAVEFFDDQGDDYNSSKRFAFRCHRLNLKDTNLAYPVNSIEFSPRHKF-LYTAGSDGIISCWNLQ  281 (342)
T ss_dssp             SGGGCEEEEEETTSEEEEEECCTTCCSTTCTTCEEEECCCCCTTCCSSCCCEEEEEECTTTCC-EEEEETTSCEEEEETT
T ss_pred             CCCCCEEEEEecCCcEEEEEEcCCCcccccccceeeecccccccccccceeEEEEEEcCCCCE-EEEecCCceEEEEcCc
Confidence            84478999999999999999987210000166777777755         9999999999996 5699999999999998


Q ss_pred             cccccccCCCCCcCCCCceeeeecCC-CcceeeEEEccCCCeEEEEecCC
Q 021657          217 KVGKKVEQGPRTTNYPAGLFFQHAGH-RDKVVDFHWNASDPWTVVSVSDD  265 (309)
Q Consensus       217 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~v~~~~~~~~~~~~~~s~s~d  265 (309)
                      .               ...+..+.+| ..+|.+++  |++.+ +++++.|
T Consensus       282 ~---------------~~~~~~~~~~h~~~v~~~~--~~~~~-l~s~s~D  313 (342)
T 1yfq_A          282 T---------------RKKIKNFAKFNEDSVVKIA--CSDNI-LCLATSD  313 (342)
T ss_dssp             T---------------TEEEEECCCCSSSEEEEEE--ECSSE-EEEEEEC
T ss_pred             c---------------HhHhhhhhcccCCCceEec--CCCCe-EEEEecC
Confidence            7               4456677888 99999999  87775 5544444

>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}

Probab=99.97  E-value=1.9e-30  Score=210.14  Aligned_cols=195  Identities=15%  Similarity=0.248  Sum_probs=154.0

Q ss_pred             cccCCCCCcceEEEEECCCCCEEEEecCCCcEEEEeCCccccccccCCccccccCCCCceeecCCCCCCCCcccCCCCCc
Q 021657            2 EILTGHQDNAEFALAMCPTEPYVLSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSV   81 (309)
Q Consensus         2 ~~l~~H~~~~V~~~~~~~~~~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (309)
                      +.+.+|.+ .|++++|+|++++|++++.||.|++||+++..                                       
T Consensus        80 ~~~~~h~~-~v~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~---------------------------------------  119 (368)
T 3mmy_A           80 KAQQMHTG-PVLDVCWSDDGSKVFTASCDKTAKMWDLSSNQ---------------------------------------  119 (368)
T ss_dssp             EEEEECSS-CEEEEEECTTSSEEEEEETTSEEEEEETTTTE---------------------------------------
T ss_pred             EEeccccC-CEEEEEECcCCCEEEEEcCCCcEEEEEcCCCC---------------------------------------
Confidence            45778998 89999999999999999999999999997531                                       


Q ss_pred             CcccccccccCCeEEEEE--ecCCCcEEEEEcCCCeEEEEEcCCCCcceEEEeecc------------------------
Q 021657           82 GPRGIYNGHEDTVEDVTF--CPSSAQEFCSVGDDSCLILWDARVGTSPVIKVEKAH------------------------  135 (309)
Q Consensus        82 ~~~~~~~~~~~~v~~~~~--~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~------------------------  135 (309)
                        ...+..|...|.+++|  +|++ .+|++++.||.|++||+++++.  ...+..+                        
T Consensus       120 --~~~~~~~~~~v~~~~~~~~~~~-~~l~~~~~dg~i~vwd~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~  194 (368)
T 3mmy_A          120 --AIQIAQHDAPVKTIHWIKAPNY-SCVMTGSWDKTLKFWDTRSSNP--MMVLQLPERCYCADVIYPMAVVATAERGLIV  194 (368)
T ss_dssp             --EEEEEECSSCEEEEEEEECSSC-EEEEEEETTSEEEEECSSCSSC--SEEEECSSCEEEEEEETTEEEEEEGGGCEEE
T ss_pred             --ceeeccccCceEEEEEEeCCCC-CEEEEccCCCcEEEEECCCCcE--EEEEecCCCceEEEecCCeeEEEeCCCcEEE
Confidence              1224568999999999  7887 8899999999999999987762  2222222                        


Q ss_pred             -----------------CCceeEEEeccCCCCe----EEEEcCCCcEEEEecCCCCCCCCCCceeeeccCCC--------
Q 021657          136 -----------------DADLHCVDWNPLDDNL----ILTGSADNSVRMFDRRNLTSNGVGSPINKFEGHSA--------  186 (309)
Q Consensus       136 -----------------~~~v~~~~~~~~~~~~----l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~--------  186 (309)
                                       ...+.++++.+ +...    +++++.||.|++||++....   ...+..+..|..        
T Consensus       195 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~dg~i~i~~~~~~~~---~~~~~~~~~~~~~~~~~~~~  270 (368)
T 3mmy_A          195 YQLENQPSEFRRIESPLKHQHRCVAIFK-DKQNKPTGFALGSIEGRVAIHYINPPNP---AKDNFTFKCHRSNGTNTSAP  270 (368)
T ss_dssp             EECSSSCEEEEECCCSCSSCEEEEEEEE-CTTSCEEEEEEEETTSEEEEEESSCSCH---HHHSEEEECSEEC----CCC
T ss_pred             EEeccccchhhhccccccCCCceEEEcc-cCCCCCCeEEEecCCCcEEEEecCCCCc---cccceeeeeeeccccccccc
Confidence                             23344555554 4433    99999999999999987310   155667777765        


Q ss_pred             ----CeeEEEEecCCCcEEEEecCCCcEEEEeCCcccccccCCCCCcCCCCceeeeecCCCcceeeEEEccCCCeEEEE
Q 021657          187 ----AVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKVVDFHWNASDPWTVVS  261 (309)
Q Consensus       187 ----~v~~~~~~~~~~~l~~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s  261 (309)
                          .|++++|+|++++ |++++.||.|++||++.               ..++..+.+|..+|.+++|+|++.+++++
T Consensus       271 ~~~~~v~~~~~sp~~~~-l~s~~~dg~i~iwd~~~---------------~~~~~~~~~~~~~v~~~~~s~~g~~l~~~  333 (368)
T 3mmy_A          271 QDIYAVNGIAFHPVHGT-LATVGSDGRFSFWDKDA---------------RTKLKTSEQLDQPISACCFNHNGNIFAYA  333 (368)
T ss_dssp             EEECCEEEEEECTTTCC-EEEEETTSCEEEEETTT---------------TEEEEECCCCSSCEEEEEECTTSSCEEEE
T ss_pred             ccccceEEEEEecCCCE-EEEEccCCeEEEEECCC---------------CcEEEEecCCCCCceEEEECCCCCeEEEE
Confidence                7999999999996 57999999999999987               44567778999999999999998876633

>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3

Probab=99.97  E-value=3.4e-28  Score=198.80  Aligned_cols=225  Identities=13%  Similarity=0.132  Sum_probs=173.0

Q ss_pred             ccCCCCCcceEEEEECCCCCEE-EEecCCCcEEEEeCCccccccccCCccccccCCCCceeecCCCCCCCCcccCCCCCc
Q 021657            3 ILTGHQDNAEFALAMCPTEPYV-LSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSV   81 (309)
Q Consensus         3 ~l~~H~~~~V~~~~~~~~~~~l-~t~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (309)
                      .+.+|..  +.+++|+|++++| ++++.|+.|++||+.++                                        
T Consensus        27 ~~~~~~~--~~~~~~s~dg~~l~~~~~~d~~i~v~d~~~~----------------------------------------   64 (391)
T 1l0q_A           27 TIPVGSN--PMGAVISPDGTKVYVANAHSNDVSIIDTATN----------------------------------------   64 (391)
T ss_dssp             EEECSSS--EEEEEECTTSSEEEEEEGGGTEEEEEETTTT----------------------------------------
T ss_pred             EeecCCC--cceEEECCCCCEEEEECCCCCeEEEEECCCC----------------------------------------
Confidence            4556654  7899999999976 67889999999999743                                        


Q ss_pred             CcccccccccCCeEEEEEecCCCcEEEEEcCCCeEEEEEcCCCCcceEEEeeccCCceeEEEeccCCCCeE-EEEcCCCc
Q 021657           82 GPRGIYNGHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLI-LTGSADNS  160 (309)
Q Consensus        82 ~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l-~~~~~dg~  160 (309)
                      +.+..+..+. .+.+++|+|++..++++++.++.|++||+.+++  ....+. +...+.+++|+| +++.+ ++++.++.
T Consensus        65 ~~~~~~~~~~-~v~~~~~spdg~~l~~~~~~~~~v~v~d~~~~~--~~~~~~-~~~~~~~~~~s~-dg~~l~~~~~~~~~  139 (391)
T 1l0q_A           65 NVIATVPAGS-SPQGVAVSPDGKQVYVTNMASSTLSVIDTTSNT--VAGTVK-TGKSPLGLALSP-DGKKLYVTNNGDKT  139 (391)
T ss_dssp             EEEEEEECSS-SEEEEEECTTSSEEEEEETTTTEEEEEETTTTE--EEEEEE-CSSSEEEEEECT-TSSEEEEEETTTTE
T ss_pred             eEEEEEECCC-CccceEECCCCCEEEEEECCCCEEEEEECCCCe--EEEEEe-CCCCcceEEECC-CCCEEEEEeCCCCE
Confidence            2223333333 899999999995555777788999999998877  445544 445789999999 88866 78888999


Q ss_pred             EEEEecCCCCCCCCCCceeeeccCCCCeeEEEEecCCCcEEEEecCCCcEEEEeCCcccccccCCCCCcCCCCceeeeec
Q 021657          161 VRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHA  240 (309)
Q Consensus       161 i~i~d~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~  240 (309)
                      |++||+++      ++.+..+..+ ..+..++|+|++++++++++.++.|++||++..               .....+ 
T Consensus       140 v~~~d~~~------~~~~~~~~~~-~~~~~~~~~~dg~~l~~~~~~~~~v~~~d~~~~---------------~~~~~~-  196 (391)
T 1l0q_A          140 VSVINTVT------KAVINTVSVG-RSPKGIAVTPDGTKVYVANFDSMSISVIDTVTN---------------SVIDTV-  196 (391)
T ss_dssp             EEEEETTT------TEEEEEEECC-SSEEEEEECTTSSEEEEEETTTTEEEEEETTTT---------------EEEEEE-
T ss_pred             EEEEECCC------CcEEEEEecC-CCcceEEECCCCCEEEEEeCCCCEEEEEECCCC---------------eEEEEE-
Confidence            99999998      7777777754 467999999999987778899999999999872               222222 


Q ss_pred             CCCcceeeEEEccCCCeEEEEecCCCCCCCCCCeEEEEEccccccCChhhHhHhhhcccceEEEeeeCC
Q 021657          241 GHRDKVVDFHWNASDPWTVVSVSDDCDSTGGGGTLQIWRMSDLIYRPQDEVLAELEKFKAHVISCTSKP  309 (309)
Q Consensus       241 ~~~~~v~~~~~~~~~~~~~~s~s~d~~s~~~dg~v~vw~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~P  309 (309)
                      .+...+.+++|+|++.+++++...     ..|+.|++||+.      +++++..+..|. .+.+++|+|
T Consensus       197 ~~~~~~~~~~~~~~g~~l~~~~~~-----~~~~~v~~~d~~------~~~~~~~~~~~~-~~~~~~~s~  253 (391)
T 1l0q_A          197 KVEAAPSGIAVNPEGTKAYVTNVD-----KYFNTVSMIDTG------TNKITARIPVGP-DPAGIAVTP  253 (391)
T ss_dssp             ECSSEEEEEEECTTSSEEEEEEEC-----SSCCEEEEEETT------TTEEEEEEECCS-SEEEEEECT
T ss_pred             ecCCCccceEECCCCCEEEEEecC-----cCCCcEEEEECC------CCeEEEEEecCC-CccEEEEcc
Confidence            345678999999999887765531     134899999998      566666776654 467888876

>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}

Probab=99.97  E-value=1.5e-28  Score=203.54  Aligned_cols=232  Identities=9%  Similarity=0.036  Sum_probs=182.9

Q ss_pred             ccCCCCCcceEEEEECCCCCEEEEecCCCcEEEEeCCccccccccCCccccccCCCCceeecCCCCCCCCcccCCCCCcC
Q 021657            3 ILTGHQDNAEFALAMCPTEPYVLSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVG   82 (309)
Q Consensus         3 ~l~~H~~~~V~~~~~~~~~~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   82 (309)
                      .+.+|.+ .|.+++|+|++.++++++.|+.|++||++++                                        +
T Consensus       164 ~~~~~~~-~v~~~~~~~~~~~~~s~~~d~~v~~~d~~~~----------------------------------------~  202 (433)
T 3bws_A          164 KYKKKLG-FVETISIPEHNELWVSQMQANAVHVFDLKTL----------------------------------------A  202 (433)
T ss_dssp             HHHTTCC-EEEEEEEGGGTEEEEEEGGGTEEEEEETTTC----------------------------------------C
T ss_pred             cccccCC-ceeEEEEcCCCEEEEEECCCCEEEEEECCCc----------------------------------------e
Confidence            3568888 8999999999999999999999999999742                                        3


Q ss_pred             cccccccccCCeEEEEEecCCCcEEEEEcCCCeEEEEEcCCCCcceEEEeeccCCceeEEEeccCCCCeEEEEc------
Q 021657           83 PRGIYNGHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGS------  156 (309)
Q Consensus        83 ~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~------  156 (309)
                      .+..+..|...+.+++|+|++..++++++.|+.|++||+++++  ....+.. ...+.+++|+| +++.+++++      
T Consensus       203 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~~~d~~~~~--~~~~~~~-~~~~~~~~~~~-~g~~l~~~~~~~~~~  278 (433)
T 3bws_A          203 YKATVDLTGKWSKILLYDPIRDLVYCSNWISEDISVIDRKTKL--EIRKTDK-IGLPRGLLLSK-DGKELYIAQFSASNQ  278 (433)
T ss_dssp             EEEEEECSSSSEEEEEEETTTTEEEEEETTTTEEEEEETTTTE--EEEECCC-CSEEEEEEECT-TSSEEEEEEEESCTT
T ss_pred             EEEEEcCCCCCeeEEEEcCCCCEEEEEecCCCcEEEEECCCCc--EEEEecC-CCCceEEEEcC-CCCEEEEEECCCCcc
Confidence            3445567888999999999995555777789999999998776  4555443 45699999999 898888887      


Q ss_pred             --CCCcEEEEecCCCCCCCCCCceeeeccCCCCeeEEEEecCCCcEEEEecCCCcEEEEeCCcccccccCCCCCcCCCCc
Q 021657          157 --ADNSVRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAG  234 (309)
Q Consensus       157 --~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~  234 (309)
                        .||.|++||+++      ++.+..+. +...+.+++|+|++++++++++.|+.|++||++.               ..
T Consensus       279 ~~~dg~i~~~d~~~------~~~~~~~~-~~~~~~~~~~~~~g~~l~~~~~~~~~v~v~d~~~---------------~~  336 (433)
T 3bws_A          279 ESGGGRLGIYSMDK------EKLIDTIG-PPGNKRHIVSGNTENKIYVSDMCCSKIEVYDLKE---------------KK  336 (433)
T ss_dssp             CSCCEEEEEEETTT------TEEEEEEE-EEECEEEEEECSSTTEEEEEETTTTEEEEEETTT---------------TE
T ss_pred             ccCCCeEEEEECCC------CcEEeecc-CCCCcceEEECCCCCEEEEEecCCCEEEEEECCC---------------Cc
Confidence              588999999998      66666553 4568899999999998888889999999999986               22


Q ss_pred             eeeeecCCCcceeeEEEccCCCeEEEEecCC-------CCCCCCCCeEEEEEccccccCChhhHhHhhhcccceEEEeee
Q 021657          235 LFFQHAGHRDKVVDFHWNASDPWTVVSVSDD-------CDSTGGGGTLQIWRMSDLIYRPQDEVLAELEKFKAHVISCTS  307 (309)
Q Consensus       235 ~~~~~~~~~~~v~~~~~~~~~~~~~~s~s~d-------~~s~~~dg~v~vw~~~~~~~~~~~~~~~~~~~h~~~v~~~~~  307 (309)
                      ....+ .+...+.+++|+|++.+++++...+       ..+|+.||.|++||+.      +++.+..+.. ...+.+++|
T Consensus       337 ~~~~~-~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~g~~dg~v~~~d~~------~~~~~~~~~~-~~~~~~~~~  408 (433)
T 3bws_A          337 VQKSI-PVFDKPNTIALSPDGKYLYVSCRGPNHPTEGYLKKGLVLGKVYVIDTT------TDTVKEFWEA-GNQPTGLDV  408 (433)
T ss_dssp             EEEEE-ECSSSEEEEEECTTSSEEEEEECCCCCTTTCTTSCCSSCCEEEEEETT------TTEEEEEEEC-SSSEEEEEE
T ss_pred             EEEEe-cCCCCCCeEEEcCCCCEEEEEecCCCccccccccccccceEEEEEECC------CCcEEEEecC-CCCCceEEE
Confidence            23333 3567789999999998777665432       0145668999999998      5666666654 457889998


Q ss_pred             CC
Q 021657          308 KP  309 (309)
Q Consensus       308 ~P  309 (309)
                      +|
T Consensus       409 s~  410 (433)
T 3bws_A          409 SP  410 (433)
T ss_dssp             CT
T ss_pred             cC
Confidence            87

>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}

Probab=99.97  E-value=1.1e-28  Score=198.15  Aligned_cols=197  Identities=10%  Similarity=0.078  Sum_probs=143.1

Q ss_pred             CCCCcceEEEEECC--CCCEEEEecCCCcEEEEeCCccccccccCCccccccCCCCceeecCCCCCCCCcccCCCCCcCc
Q 021657            6 GHQDNAEFALAMCP--TEPYVLSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGP   83 (309)
Q Consensus         6 ~H~~~~V~~~~~~~--~~~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   83 (309)
                      +|.+ +|.+++|+|  ++++|++|+.||+|++||++++..                                        
T Consensus       123 ~~~~-~v~~~~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~----------------------------------------  161 (343)
T 3lrv_A          123 DSAN-EIIYMYGHNEVNTEYFIWADNRGTIGFQSYEDDSQ----------------------------------------  161 (343)
T ss_dssp             CCSS-CEEEEECCC---CCEEEEEETTCCEEEEESSSSCE----------------------------------------
T ss_pred             CCCC-CEEEEEcCCCCCCCEEEEEeCCCcEEEEECCCCcE----------------------------------------
Confidence            5657 899999999  999999999999999999985422                                        


Q ss_pred             cccc-ccccCCeEEEEEecCCCcEEEEEcCCCeEEEEEcCCCCcceEEEeec-cCCceeEEEeccCCCCeEEEEcCCCcE
Q 021657           84 RGIY-NGHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPVIKVEKA-HDADLHCVDWNPLDDNLILTGSADNSV  161 (309)
Q Consensus        84 ~~~~-~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~-~~~~v~~~~~~~~~~~~l~~~~~dg~i  161 (309)
                      .... ..|...|.+++|+|++ .+|++|+.||.|++||+++++.. ...+.. |..+|++++|+| ++.+|++++ |+.|
T Consensus       162 ~~~~~~~~~~~i~~~~~~pdg-~~lasg~~dg~i~iwd~~~~~~~-~~~~~~~h~~~v~~l~fs~-~g~~l~s~~-~~~v  237 (343)
T 3lrv_A          162 YIVHSAKSDVEYSSGVLHKDS-LLLALYSPDGILDVYNLSSPDQA-SSRFPVDEEAKIKEVKFAD-NGYWMVVEC-DQTV  237 (343)
T ss_dssp             EEEECCCSSCCCCEEEECTTS-CEEEEECTTSCEEEEESSCTTSC-CEECCCCTTSCEEEEEECT-TSSEEEEEE-SSBE
T ss_pred             EEEEecCCCCceEEEEECCCC-CEEEEEcCCCEEEEEECCCCCCC-ccEEeccCCCCEEEEEEeC-CCCEEEEEe-CCeE
Confidence            1222 2355679999999998 89999999999999999988732 155666 999999999999 999999999 5599


Q ss_pred             EEEecCCCCCCCCCCceeeecc---CCCCee--EEEEecCCCcEEEEecC-CCcEEEEeCCcccccccCCCCCcCCCCce
Q 021657          162 RMFDRRNLTSNGVGSPINKFEG---HSAAVL--CVQWSPDKSSVFGSSAE-DGLLNIWDYEKVGKKVEQGPRTTNYPAGL  235 (309)
Q Consensus       162 ~i~d~~~~~~~~~~~~~~~~~~---~~~~v~--~~~~~~~~~~l~~~~~~-dg~i~iwd~~~~~~~~~~~~~~~~~~~~~  235 (309)
                      ++||+++      .+.+..+..   +...+.  +++|+|+++++ ++++. |+.+++|++....+.              
T Consensus       238 ~iwd~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l-~~~s~~d~~i~v~~~~~~~~~--------------  296 (343)
T 3lrv_A          238 VCFDLRK------DVGTLAYPTYTIPEFKTGTVTYDIDDSGKNM-IAYSNESNSLTIYKFDKKTKN--------------  296 (343)
T ss_dssp             EEEETTS------STTCBSSCCCBC-----CCEEEEECTTSSEE-EEEETTTTEEEEEEECTTTCS--------------
T ss_pred             EEEEcCC------CCcceeecccccccccccceEEEECCCCCEE-EEecCCCCcEEEEEEcccccc--------------
Confidence            9999998      555444432   334444  69999999974 56666 999999999762221              


Q ss_pred             eeeecCCCcceeeEEEcc---CCCeEEEEecCCCCCCCCCCeEEEEEcc
Q 021657          236 FFQHAGHRDKVVDFHWNA---SDPWTVVSVSDDCDSTGGGGTLQIWRMS  281 (309)
Q Consensus       236 ~~~~~~~~~~v~~~~~~~---~~~~~~~s~s~d~~s~~~dg~v~vw~~~  281 (309)
                       ...    .++..+.|.|   +...++ +++.       |+.+.++-..
T Consensus       297 -~~~----~~~~~~~~~~~~~~~~~l~-~~~~-------d~~~~~~~~~  332 (343)
T 3lrv_A          297 -WTK----DEESALCLQSDTADFTDMD-VVCG-------DGGIAAILKT  332 (343)
T ss_dssp             -EEE----EEEEECCC----CCCCEEE-EEEE-------TTEEEEEEEC
T ss_pred             -eEe----cCceeEecCccccccceeE-EEec-------CCceEEEEec
Confidence             111    4566777776   555444 3333       3777776544

>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A

Probab=99.97  E-value=1.2e-27  Score=196.62  Aligned_cols=226  Identities=12%  Similarity=0.072  Sum_probs=170.5

Q ss_pred             cccCCCCCcceEEEEECCCCCEEEEecCCC---cEEEEeCCccccccccCCccccccCCCCceeecCCCCCCCCcccCCC
Q 021657            2 EILTGHQDNAEFALAMCPTEPYVLSGGKDK---SVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADG   78 (309)
Q Consensus         2 ~~l~~H~~~~V~~~~~~~~~~~l~t~~~dg---~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   78 (309)
                      +.|.+|.+ .|.+++|+|+|++|++++.|+   .|++||++++.                                    
T Consensus       172 ~~l~~~~~-~v~~~~~Spdg~~la~~s~~~~~~~i~~~d~~tg~------------------------------------  214 (415)
T 2hqs_A          172 FVVHRSPQ-PLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGA------------------------------------  214 (415)
T ss_dssp             EEEEEESS-CEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCC------------------------------------
T ss_pred             EEEeCCCC-cceeeEEcCCCCEEEEEEecCCCcEEEEEECCCCc------------------------------------
Confidence            45678888 899999999999999999885   99999997531                                    


Q ss_pred             CCcCcccccccccCCeEEEEEecCCCcEEEEEcCCCe--EEEEEcCCCCcceEEEeeccCCceeEEEeccCCCCeEEEEc
Q 021657           79 PSVGPRGIYNGHEDTVEDVTFCPSSAQEFCSVGDDSC--LILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGS  156 (309)
Q Consensus        79 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~--i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~  156 (309)
                           ...+..|...+.+++|+|+|..++++++.++.  |++||+.+++   ...+..|...+.+++|+| +++.|++++
T Consensus       215 -----~~~l~~~~~~~~~~~~spdg~~la~~~~~~g~~~i~~~d~~~~~---~~~l~~~~~~~~~~~~sp-dg~~l~~~s  285 (415)
T 2hqs_A          215 -----VRQVASFPRHNGAPAFSPDGSKLAFALSKTGSLNLYVMDLASGQ---IRQVTDGRSNNTEPTWFP-DSQNLAFTS  285 (415)
T ss_dssp             -----EEEEECCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCC---EEECCCCSSCEEEEEECT-TSSEEEEEE
T ss_pred             -----EEEeecCCCcccCEEEcCCCCEEEEEEecCCCceEEEEECCCCC---EEeCcCCCCcccceEECC-CCCEEEEEE
Confidence                 12345577789999999999444447776654  9999998876   356667888999999999 999888877


Q ss_pred             C-CC--cEEEEecCCCCCCCCCCceeeeccCCCCeeEEEEecCCCcEEEEecC--CCcEEEEeCCcccccccCCCCCcCC
Q 021657          157 A-DN--SVRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAE--DGLLNIWDYEKVGKKVEQGPRTTNY  231 (309)
Q Consensus       157 ~-dg--~i~i~d~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~--dg~i~iwd~~~~~~~~~~~~~~~~~  231 (309)
                      . ++  .|++||+.+      ++ ...+..+...+.+++|+|+|++|+.++..  +..|++||+... +           
T Consensus       286 ~~~g~~~i~~~d~~~------~~-~~~l~~~~~~~~~~~~spdG~~l~~~~~~~g~~~i~~~d~~~~-~-----------  346 (415)
T 2hqs_A          286 DQAGRPQVYKVNING------GA-PQRITWEGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATG-G-----------  346 (415)
T ss_dssp             CTTSSCEEEEEETTS------SC-CEECCCSSSEEEEEEECTTSSEEEEEEECSSCEEEEEEETTTC-C-----------
T ss_pred             CCCCCcEEEEEECCC------CC-EEEEecCCCcccCeEECCCCCEEEEEECcCCceEEEEEECCCC-C-----------
Confidence            5 45  677778876      44 34455566788999999999976544444  358999999861 1           


Q ss_pred             CCceeeeecCCCcceeeEEEccCCCeEEEEecCCCCCCCCCCeEEEEEccccccCChhhHhHhhhcccceEEEeeeCC
Q 021657          232 PAGLFFQHAGHRDKVVDFHWNASDPWTVVSVSDDCDSTGGGGTLQIWRMSDLIYRPQDEVLAELEKFKAHVISCTSKP  309 (309)
Q Consensus       232 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~s~d~~s~~~dg~v~vw~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~P  309 (309)
                         . ..+..+. .+.+++|+|++..++.++.++     ....|++||+.       +..+..+..|.+.|.+++|+|
T Consensus       347 ---~-~~l~~~~-~~~~~~~spdg~~l~~~s~~~-----~~~~l~~~d~~-------g~~~~~l~~~~~~v~~~~~~~  407 (415)
T 2hqs_A          347 ---V-QVLSSTF-LDETPSLAPNGTMVIYSSSQG-----MGSVLNLVSTD-------GRFKARLPATDGQVKFPAWSP  407 (415)
T ss_dssp             ---E-EECCCSS-SCEEEEECTTSSEEEEEEEET-----TEEEEEEEETT-------SCCEEECCCSSSEEEEEEECC
T ss_pred             ---E-EEecCCC-CcCCeEEcCCCCEEEEEEcCC-----CccEEEEEECC-------CCcEEEeeCCCCCCcCCcccc
Confidence               1 2233443 789999999998766544332     01279999986       445677889999999999998

>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}

Probab=99.96  E-value=9.7e-28  Score=198.69  Aligned_cols=221  Identities=12%  Similarity=0.130  Sum_probs=174.6

Q ss_pred             eEEEEECCCCCEEEEecCCCcEEEEeCCccccccccCCccccccCCCCceeecCCCCCCCCcccCCCCCcCccccccccc
Q 021657           12 EFALAMCPTEPYVLSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHE   91 (309)
Q Consensus        12 V~~~~~~~~~~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   91 (309)
                      +.+++|+|++.++++++.|+.|++||+.++......                                   ....+.+|.
T Consensus       125 ~~~~~~s~~~~~~~~~~~~~~i~~~d~~~g~~~~~~-----------------------------------~~~~~~~~~  169 (433)
T 3bws_A          125 PKSVRFIDNTRLAIPLLEDEGMDVLDINSGQTVRLS-----------------------------------PPEKYKKKL  169 (433)
T ss_dssp             BCCCEESSSSEEEEEBTTSSSEEEEETTTCCEEEEC-----------------------------------CCHHHHTTC
T ss_pred             ceEEEEeCCCeEEEEeCCCCeEEEEECCCCeEeeec-----------------------------------CcccccccC
Confidence            468999998888889999999999999854322111                                   112456788


Q ss_pred             CCeEEEEEecCCCcEEEEEcCCCeEEEEEcCCCCcceEEEeeccCCceeEEEeccCCCCeE-EEEcCCCcEEEEecCCCC
Q 021657           92 DTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLI-LTGSADNSVRMFDRRNLT  170 (309)
Q Consensus        92 ~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l-~~~~~dg~i~i~d~~~~~  170 (309)
                      ..|.+++|++++ .++++++.|+.|++||+.+++  ....+..|...+.+++|+| +++.+ ++++.|+.|++||+++  
T Consensus       170 ~~v~~~~~~~~~-~~~~s~~~d~~v~~~d~~~~~--~~~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~~~i~~~d~~~--  243 (433)
T 3bws_A          170 GFVETISIPEHN-ELWVSQMQANAVHVFDLKTLA--YKATVDLTGKWSKILLYDP-IRDLVYCSNWISEDISVIDRKT--  243 (433)
T ss_dssp             CEEEEEEEGGGT-EEEEEEGGGTEEEEEETTTCC--EEEEEECSSSSEEEEEEET-TTTEEEEEETTTTEEEEEETTT--
T ss_pred             CceeEEEEcCCC-EEEEEECCCCEEEEEECCCce--EEEEEcCCCCCeeEEEEcC-CCCEEEEEecCCCcEEEEECCC--
Confidence            999999999988 899999999999999998877  6677778889999999999 77766 5666899999999998  


Q ss_pred             CCCCCCceeeeccCCCCeeEEEEecCCCcEEEEec--------CCCcEEEEeCCcccccccCCCCCcCCCCceeeeecCC
Q 021657          171 SNGVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSA--------EDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGH  242 (309)
Q Consensus       171 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~--------~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~  242 (309)
                          ++.+..+.. ...+.+++|+|+++.++ +++        .|+.|++||++..               .... ...|
T Consensus       244 ----~~~~~~~~~-~~~~~~~~~~~~g~~l~-~~~~~~~~~~~~dg~i~~~d~~~~---------------~~~~-~~~~  301 (433)
T 3bws_A          244 ----KLEIRKTDK-IGLPRGLLLSKDGKELY-IAQFSASNQESGGGRLGIYSMDKE---------------KLID-TIGP  301 (433)
T ss_dssp             ----TEEEEECCC-CSEEEEEEECTTSSEEE-EEEEESCTTCSCCEEEEEEETTTT---------------EEEE-EEEE
T ss_pred             ----CcEEEEecC-CCCceEEEEcCCCCEEE-EEECCCCccccCCCeEEEEECCCC---------------cEEe-eccC
Confidence                777777765 45689999999999765 554        5889999999862               1222 2345


Q ss_pred             CcceeeEEEccCCCeEEEEecCCCCCCCCCCeEEEEEccccccCChhhHhHhhhcccceEEEeeeCC
Q 021657          243 RDKVVDFHWNASDPWTVVSVSDDCDSTGGGGTLQIWRMSDLIYRPQDEVLAELEKFKAHVISCTSKP  309 (309)
Q Consensus       243 ~~~v~~~~~~~~~~~~~~s~s~d~~s~~~dg~v~vw~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~P  309 (309)
                      ...+..++|+|+++.++++++.|       +.|++||+.      +++.+..+. +...+.+++|+|
T Consensus       302 ~~~~~~~~~~~~g~~l~~~~~~~-------~~v~v~d~~------~~~~~~~~~-~~~~~~~~~~s~  354 (433)
T 3bws_A          302 PGNKRHIVSGNTENKIYVSDMCC-------SKIEVYDLK------EKKVQKSIP-VFDKPNTIALSP  354 (433)
T ss_dssp             EECEEEEEECSSTTEEEEEETTT-------TEEEEEETT------TTEEEEEEE-CSSSEEEEEECT
T ss_pred             CCCcceEEECCCCCEEEEEecCC-------CEEEEEECC------CCcEEEEec-CCCCCCeEEEcC
Confidence            56789999999998888866665       999999998      555555554 667788999886

>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3

Probab=99.95  E-value=2.7e-26  Score=187.55  Aligned_cols=206  Identities=10%  Similarity=0.142  Sum_probs=160.3

Q ss_pred             CEEEEecCCCcEEEEeCCccccccccCCccccccCCCCceeecCCCCCCCCcccCCCCCcCcccccccccCCeEEEEEec
Q 021657           22 PYVLSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCP  101 (309)
Q Consensus        22 ~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~  101 (309)
                      .++++++.|+.|++||++++                                        +.+..+..|. .+.+++|+|
T Consensus         3 ~l~vs~~~d~~v~v~d~~~~----------------------------------------~~~~~~~~~~-~~~~~~~s~   41 (391)
T 1l0q_A            3 FAYIANSESDNISVIDVTSN----------------------------------------KVTATIPVGS-NPMGAVISP   41 (391)
T ss_dssp             EEEEEETTTTEEEEEETTTT----------------------------------------EEEEEEECSS-SEEEEEECT
T ss_pred             EEEEEcCCCCEEEEEECCCC----------------------------------------eEEEEeecCC-CcceEEECC
Confidence            46789999999999999743                                        2333444454 589999999


Q ss_pred             CCCcEEEEEcCCCeEEEEEcCCCCcceEEEeeccCCceeEEEeccCCCCeE-EEEcCCCcEEEEecCCCCCCCCCCceee
Q 021657          102 SSAQEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLI-LTGSADNSVRMFDRRNLTSNGVGSPINK  180 (309)
Q Consensus       102 ~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l-~~~~~dg~i~i~d~~~~~~~~~~~~~~~  180 (309)
                      ++..++++++.|+.|++||+.+++  ....+..+. .+.+++|+| +++++ ++++.++.|++||+.+      ++.+..
T Consensus        42 dg~~l~~~~~~d~~i~v~d~~~~~--~~~~~~~~~-~v~~~~~sp-dg~~l~~~~~~~~~v~v~d~~~------~~~~~~  111 (391)
T 1l0q_A           42 DGTKVYVANAHSNDVSIIDTATNN--VIATVPAGS-SPQGVAVSP-DGKQVYVTNMASSTLSVIDTTS------NTVAGT  111 (391)
T ss_dssp             TSSEEEEEEGGGTEEEEEETTTTE--EEEEEECSS-SEEEEEECT-TSSEEEEEETTTTEEEEEETTT------TEEEEE
T ss_pred             CCCEEEEECCCCCeEEEEECCCCe--EEEEEECCC-CccceEECC-CCCEEEEEECCCCEEEEEECCC------CeEEEE
Confidence            995556888899999999998877  555555444 899999999 88866 4556779999999998      777777


Q ss_pred             eccCCCCeeEEEEecCCCcEEEEecCCCcEEEEeCCcccccccCCCCCcCCCCceeeeecCCCcceeeEEEccCCCeEEE
Q 021657          181 FEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKVVDFHWNASDPWTVV  260 (309)
Q Consensus       181 ~~~~~~~v~~~~~~~~~~~l~~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~  260 (309)
                      +.. ...+.+++|+|++++++++++.|+.|++||++.               .+....+..+ ..+..++|+|++.++++
T Consensus       112 ~~~-~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~---------------~~~~~~~~~~-~~~~~~~~~~dg~~l~~  174 (391)
T 1l0q_A          112 VKT-GKSPLGLALSPDGKKLYVTNNGDKTVSVINTVT---------------KAVINTVSVG-RSPKGIAVTPDGTKVYV  174 (391)
T ss_dssp             EEC-SSSEEEEEECTTSSEEEEEETTTTEEEEEETTT---------------TEEEEEEECC-SSEEEEEECTTSSEEEE
T ss_pred             EeC-CCCcceEEECCCCCEEEEEeCCCCEEEEEECCC---------------CcEEEEEecC-CCcceEEECCCCCEEEE
Confidence            764 456899999999998777999999999999987               2333444444 45699999999998877


Q ss_pred             EecCCCCCCCCCCeEEEEEccccccCChhhHhHhhhcccceEEEeeeCC
Q 021657          261 SVSDDCDSTGGGGTLQIWRMSDLIYRPQDEVLAELEKFKAHVISCTSKP  309 (309)
Q Consensus       261 s~s~d~~s~~~dg~v~vw~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~P  309 (309)
                      +++.|       +.|++||+.      +++++..+. +...+.+++|+|
T Consensus       175 ~~~~~-------~~v~~~d~~------~~~~~~~~~-~~~~~~~~~~~~  209 (391)
T 1l0q_A          175 ANFDS-------MSISVIDTV------TNSVIDTVK-VEAAPSGIAVNP  209 (391)
T ss_dssp             EETTT-------TEEEEEETT------TTEEEEEEE-CSSEEEEEEECT
T ss_pred             EeCCC-------CEEEEEECC------CCeEEEEEe-cCCCccceEECC
Confidence            66655       999999998      455555544 566888888886

>2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A

Probab=99.95  E-value=2.1e-27  Score=184.28  Aligned_cols=157  Identities=13%  Similarity=0.144  Sum_probs=115.3

Q ss_pred             CCCCCcceEEEEECC---CCCEEEEecCCCcEEEEeCCccccccccCCccccccCCCCceeecCCCCCCCCcccCCCCCc
Q 021657            5 TGHQDNAEFALAMCP---TEPYVLSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSV   81 (309)
Q Consensus         5 ~~H~~~~V~~~~~~~---~~~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (309)
                      .+|.. .++.++|+|   ++.+|++|+.|++|+|||++++                                        
T Consensus       175 ~~~~~-~v~~l~fs~~~g~~~~LaSgS~D~TIkIWDl~TG----------------------------------------  213 (356)
T 2w18_A          175 FLMPP-EETILTFAEVQGMQEALLGTTIMNNIVIWNLKTG----------------------------------------  213 (356)
T ss_dssp             EECCC-SSCEEEEEEEETSTTEEEEEETTSEEEEEETTTC----------------------------------------
T ss_pred             ccCCC-ceeeEEeeccCCCCceEEEecCCCcEEEEECCCC----------------------------------------
Confidence            34554 455556655   5577889999999999999854                                        


Q ss_pred             Cccccccccc---CCeEEEEEecCCCcEE------------EEEcCCCeEEEEEcCCCCcceEEEe-----eccCCceeE
Q 021657           82 GPRGIYNGHE---DTVEDVTFCPSSAQEF------------CSVGDDSCLILWDARVGTSPVIKVE-----KAHDADLHC  141 (309)
Q Consensus        82 ~~~~~~~~~~---~~v~~~~~~~~~~~~l------------~s~~~dg~i~iwd~~~~~~~~~~~~-----~~~~~~v~~  141 (309)
                      +.++.+.+|.   ..+.+++|+|++ .++            ++|+.|++|++||..+++  ....+     .+|...+.+
T Consensus       214 k~l~tL~g~~~~v~~v~~vafSpdG-~~lvs~s~~~~~w~laSGs~D~tIklWd~~tgk--~l~v~~~~~p~Gh~~~~ls  290 (356)
T 2w18_A          214 QLLKKMHIDDSYQASVCHKAYSEMG-LLFIVLSHPCAKESESLRSPVFQLIVINPKTTL--SVGVMLYCLPPGQAGRFLE  290 (356)
T ss_dssp             CEEEEEECCC---CCCEEEEEEETT-EEEEEEC------------CCEEEEEEETTTTE--EEEEEEECCCTTCCCCEEE
T ss_pred             cEEEEEcCCCcceeeeEEEEECCCC-CEEEEeccCCCcceeeccCCCcEEEEEECCCCE--EEEEEEeeccCCCcceeEc
Confidence            3444554432   467788999988 554            678899999999998877  33332     355555443


Q ss_pred             EEeccCCCCeEEEEcCCCcEEEEecCCCCCCCCCCceeeeccCCCCee-EEEEecCCCcEEEEecCCCcEEEEeC
Q 021657          142 VDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGHSAAVL-CVQWSPDKSSVFGSSAEDGLLNIWDY  215 (309)
Q Consensus       142 ~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~v~-~~~~~~~~~~l~~~~~~dg~i~iwd~  215 (309)
                      .  +. ++.++++++.|++|+|||+.+      ++.+.++.+|...+. +++|+|||++ |++|+.|++|+|||+
T Consensus       291 g--~~-sg~~lASgS~DgTIkIWDl~t------Gk~l~tL~gH~~~vvs~vafSPDG~~-LaSGS~D~TIklWd~  355 (356)
T 2w18_A          291 G--DV-KDHCAAAILTSGTIAIWDLLL------GQCTALLPPVSDQHWSFVKWSGTDSH-LLAGQKDGNIFVYHY  355 (356)
T ss_dssp             E--EE-ETTEEEEEETTSCEEEEETTT------CSEEEEECCC--CCCCEEEECSSSSE-EEEECTTSCEEEEEE
T ss_pred             c--cc-CCCEEEEEcCCCcEEEEECCC------CcEEEEecCCCCCeEEEEEECCCCCE-EEEEECCCcEEEecC
Confidence            3  33 477899999999999999999      999999998877655 6899999996 679999999999996

>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A

Probab=99.94  E-value=3.9e-26  Score=184.02  Aligned_cols=204  Identities=14%  Similarity=0.109  Sum_probs=131.6

Q ss_pred             CCCcCcccccccccCCeEEEEEecCCCcEEEEEcCCCeEEEEEcCCCCcceEEEeeccCCceeEEEeccCCCCeE-EEEc
Q 021657           78 GPSVGPRGIYNGHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLI-LTGS  156 (309)
Q Consensus        78 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l-~~~~  156 (309)
                      ..+..++.....|...|++++|+|++ .+|++|+.++ +++||+...+  .....  +...+..+++.+ +++.+ ++++
T Consensus         6 ~~~~~~~~~~~~h~~~V~~v~fs~dg-~~la~g~~~~-~~iw~~~~~~--~~~~~--~~~~~~~~~~~~-~~~~~~~~~~   78 (355)
T 3vu4_A            6 MITRNPIVPENHVSNPVTDYEFNQDQ-SCLILSTLKS-FEIYNVHPVA--HIMSQ--EMRHLSKVRMLH-RTNYVAFVTG   78 (355)
T ss_dssp             -------------CCCCCEEEECTTS-SEEEEECSSE-EEEEEETTEE--EEEEE--ECSCCCEEEECT-TSSEEEEECS
T ss_pred             ccccCCccccccCCCceEEEEECCCC-CEEEEEcCCE-EEEEecCCcc--eeeee--ecCCeEEEEEcC-CCCEEEEEEC
Confidence            34455666678899999999999999 7899888775 7899987655  22222  223578888988 66666 6678


Q ss_pred             CCCcEEEEecCCCCCCCCCCceeeeccCCCCeeEEEEecCCCc----------------------------------EEE
Q 021657          157 ADNSVRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWSPDKSS----------------------------------VFG  202 (309)
Q Consensus       157 ~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~----------------------------------l~~  202 (309)
                      .|+.|++||+++      ++.+..+. +...|.+++++++...                                  +++
T Consensus        79 ~d~~v~iWd~~~------~~~~~~~~-~~~~v~~v~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~~s~~~la  151 (355)
T 3vu4_A           79 VKEVVHIWDDVK------KQDVSRIK-VDAPVKDLFLSREFIVVSYGDVISVFKFGNPWKRITDDIRFGGVCEFSNGLLV  151 (355)
T ss_dssp             STTEEEEEETTT------TEEEEEEE-CSSCEEEEEECSSEEEEEETTEEEEEESSTTCCBSSCCEEEEEEEEEETTEEE
T ss_pred             CccEEEEEECCC------CcEEEEEE-CCCceEEEEEcCCEEEEEEcCEEEEEECCCCceeeEEeccCCceEEEEccEEE
Confidence            889999999998      78888877 5668888888876310                                  111


Q ss_pred             E--ecCCCcEEEEeCCcccccccCCCCCcCCCCce-eeeecCCCcceeeEEEccCCCeEEEEecCCCCCCCCCCe-EEEE
Q 021657          203 S--SAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGL-FFQHAGHRDKVVDFHWNASDPWTVVSVSDDCDSTGGGGT-LQIW  278 (309)
Q Consensus       203 ~--~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~v~~~~~~~~~~~~~~s~s~d~~s~~~dg~-v~vw  278 (309)
                      .  |+.||.|++||++..................+ +..+.+|...|.+++|+|++.+ ++++|       .|++ |++|
T Consensus       152 ~~sg~~~g~v~iwd~~~~~~~~~~~~~~~~~~~~p~~~~~~~h~~~v~~~~~s~~g~~-l~s~s-------~d~~~v~iw  223 (355)
T 3vu4_A          152 YSNEFNLGQIHITKLQSSGSATTQDQGVQQKAILGKGVLIKAHTNPIKMVRLNRKSDM-VATCS-------QDGTIIRVF  223 (355)
T ss_dssp             EEESSCTTCEEEEECCC------------------CCEEECCCSSCEEEEEECTTSSE-EEEEE-------TTCSEEEEE
T ss_pred             EeCCCcCcEEEEEECCCCCccccccccccccccCcccEEEEccCCceEEEEECCCCCE-EEEEe-------CCCCEEEEE
Confidence            1  34445555555443111000000000000012 5678899999999999998775 55444       4598 9999


Q ss_pred             EccccccCChhhHhHhhh-c-ccceEEEeeeCC
Q 021657          279 RMSDLIYRPQDEVLAELE-K-FKAHVISCTSKP  309 (309)
Q Consensus       279 ~~~~~~~~~~~~~~~~~~-~-h~~~v~~~~~~P  309 (309)
                      |+.      +++++.++. + |.+.|.+++|+|
T Consensus       224 d~~------~~~~~~~~~~g~h~~~v~~~~~s~  250 (355)
T 3vu4_A          224 KTE------DGVLVREFRRGLDRADVVDMKWST  250 (355)
T ss_dssp             ETT------TCCEEEEEECTTCCSCEEEEEECT
T ss_pred             ECC------CCcEEEEEEcCCCCCcEEEEEECC
Confidence            999      678888887 5 999999999998

>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A

Probab=99.94  E-value=3.8e-25  Score=181.76  Aligned_cols=257  Identities=13%  Similarity=0.078  Sum_probs=177.5

Q ss_pred             ceEEEEECCCCC-EEEEec----CCC----cEEEEeC--Cccccccc--c--CCcccc----cc--------C-----CC
Q 021657           11 AEFALAMCPTEP-YVLSGG----KDK----SVVLWSI--QDHITSSA--T--DPATAK----SA--------G-----SS   58 (309)
Q Consensus        11 ~V~~~~~~~~~~-~l~t~~----~dg----~i~vwd~--~~~~~~~~--~--~~~~~~----~~--------~-----~~   58 (309)
                      .|...+|.+.|. ++++|+    .||    +|+|||+  .++.....  .  ......    ..        .     ..
T Consensus        64 ~~~~~~w~~~g~~~~~~g~~~~~~~G~~~~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~g~~~~~~  143 (415)
T 2hqs_A           64 EVQPAAWSALGIDAVVVGQVTPNPDGSYNVAYQLVDTGGAPGTVLAQNSYKVNKQWLRYAGHTASDEVFEKLTGIKGAFR  143 (415)
T ss_dssp             GCCHHHHHTTTCCEEEEEEEEECTTSCEEEEEEEEECSSSTTCEEEEEEEEECGGGHHHHHHHHHHHHHHHHHSSCCCTT
T ss_pred             CcCHHHHHhcCCCEEEEEEEEECCCCeEEEEEEEEeCCCCCCCEEeeeEEEcChhHHHHHHHHHHHHHHHHHcCCCCcCC
Confidence            566778888775 566776    567    8999999  76643311  1  110000    00        0     01


Q ss_pred             CceeecCCCCCC---CCcccCCCCCcCcccccccccCCeEEEEEecCCCcEEEEEcCCC---eEEEEEcCCCCcceEEEe
Q 021657           59 GSIIKQSPKPGD---GNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQEFCSVGDDS---CLILWDARVGTSPVIKVE  132 (309)
Q Consensus        59 ~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg---~i~iwd~~~~~~~~~~~~  132 (309)
                      ..+........+   ..+.+|+... .....+.+|...+.+++|+|+| +.|++++.++   .|++||+.+++  . ..+
T Consensus       144 ~~l~~~s~~~~~~~~~~i~i~d~~g-~~~~~l~~~~~~v~~~~~Spdg-~~la~~s~~~~~~~i~~~d~~tg~--~-~~l  218 (415)
T 2hqs_A          144 TRIAYVVQTNGGQFPYELRVSDYDG-YNQFVVHRSPQPLMSPAWSPDG-SKLAYVTFESGRSALVIQTLANGA--V-RQV  218 (415)
T ss_dssp             CEEEEEEECSSSSCCEEEEEEETTS-CSCEEEEEESSCEEEEEECTTS-SEEEEEECTTSSCEEEEEETTTCC--E-EEE
T ss_pred             CEEEEEEecCCCCccceEEEEcCCC-CCCEEEeCCCCcceeeEEcCCC-CEEEEEEecCCCcEEEEEECCCCc--E-EEe
Confidence            122222222223   6888998864 4567778899999999999999 7788888775   99999999887  3 345


Q ss_pred             eccCCceeEEEeccCCCCeEE-EEcCCCc--EEEEecCCCCCCCCCCceeeeccCCCCeeEEEEecCCCcEEEEecCCC-
Q 021657          133 KAHDADLHCVDWNPLDDNLIL-TGSADNS--VRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAEDG-  208 (309)
Q Consensus       133 ~~~~~~v~~~~~~~~~~~~l~-~~~~dg~--i~i~d~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~dg-  208 (309)
                      ..|...+.+++|+| +++.|+ +++.++.  |++||+++      ++. ..+..+...+.+++|+|||+++++++..++ 
T Consensus       219 ~~~~~~~~~~~~sp-dg~~la~~~~~~g~~~i~~~d~~~------~~~-~~l~~~~~~~~~~~~spdg~~l~~~s~~~g~  290 (415)
T 2hqs_A          219 ASFPRHNGAPAFSP-DGSKLAFALSKTGSLNLYVMDLAS------GQI-RQVTDGRSNNTEPTWFPDSQNLAFTSDQAGR  290 (415)
T ss_dssp             ECCSSCEEEEEECT-TSSEEEEEECTTSSCEEEEEETTT------CCE-EECCCCSSCEEEEEECTTSSEEEEEECTTSS
T ss_pred             ecCCCcccCEEEcC-CCCEEEEEEecCCCceEEEEECCC------CCE-EeCcCCCCcccceEECCCCCEEEEEECCCCC
Confidence            67788999999999 888777 6666654  99999987      544 567778888999999999997654544455 


Q ss_pred             -cEEEEeCCcccccccCCCCCcCCCCceeeeecCCCcceeeEEEccCCCeEEEEecCCCCCCCCCCeEEEEEccccccCC
Q 021657          209 -LLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKVVDFHWNASDPWTVVSVSDDCDSTGGGGTLQIWRMSDLIYRP  287 (309)
Q Consensus       209 -~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~s~d~~s~~~dg~v~vw~~~~~~~~~  287 (309)
                       .|++||+... +               ...+..+...+.+++|+|++.+++.+..++     .+..|++||+.      
T Consensus       291 ~~i~~~d~~~~-~---------------~~~l~~~~~~~~~~~~spdG~~l~~~~~~~-----g~~~i~~~d~~------  343 (415)
T 2hqs_A          291 PQVYKVNINGG-A---------------PQRITWEGSQNQDADVSSDGKFMVMVSSNG-----GQQHIAKQDLA------  343 (415)
T ss_dssp             CEEEEEETTSS-C---------------CEECCCSSSEEEEEEECTTSSEEEEEEECS-----SCEEEEEEETT------
T ss_pred             cEEEEEECCCC-C---------------EEEEecCCCcccCeEECCCCCEEEEEECcC-----CceEEEEEECC------
Confidence             5667787651 1               122344667889999999999877655442     24689999998      


Q ss_pred             hhhHhHhhhcccceEEEeeeCC
Q 021657          288 QDEVLAELEKFKAHVISCTSKP  309 (309)
Q Consensus       288 ~~~~~~~~~~h~~~v~~~~~~P  309 (309)
                      +++. ..+..|. .+.+++|+|
T Consensus       344 ~~~~-~~l~~~~-~~~~~~~sp  363 (415)
T 2hqs_A          344 TGGV-QVLSSTF-LDETPSLAP  363 (415)
T ss_dssp             TCCE-EECCCSS-SCEEEEECT
T ss_pred             CCCE-EEecCCC-CcCCeEEcC
Confidence            3333 3455554 788888887

>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A

Probab=99.94  E-value=2e-25  Score=183.97  Aligned_cols=228  Identities=15%  Similarity=0.208  Sum_probs=155.0

Q ss_pred             ceEEEEECCCCCEEEEecCCCcEEEEeCCccccccccCCccccccCCCCceeecCCCCCCCCcccCCCCCcCcccccccc
Q 021657           11 AEFALAMCPTEPYVLSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGH   90 (309)
Q Consensus        11 ~V~~~~~~~~~~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   90 (309)
                      .++.+++++++.++++++.|+ ++||+............        .             ...+   ...... ....+
T Consensus        38 ~~n~lavs~~~~~l~~~~~dg-v~v~~~~~~~~~~~~~~--------~-------------~~~~---~~~~~~-~~~~~   91 (434)
T 2oit_A           38 RSSLLAVSNKYGLVFAGGASG-LQIFPTKNLLIQNKPGD--------D-------------PNKI---VDKVQG-LLVPM   91 (434)
T ss_dssp             CCBCEEEETTTTEEEEEETTE-EEEEEHHHHCCCCCTTC--------C-------------TTCE---EECCCC-EEECC
T ss_pred             CccEEEEecCCCEEEEECCCE-EEEEEchHhhhhccccc--------C-------------cccc---cccCcc-ccccC
Confidence            478999999999999999888 99998753211000000        0             0000   000001 11235


Q ss_pred             cCCeEEEEEecCCCcEEE----EEcCCCeEEEEEcCCC-----Cc--c--eEEEeeccCCceeEEEeccCCCCeEEEEcC
Q 021657           91 EDTVEDVTFCPSSAQEFC----SVGDDSCLILWDARVG-----TS--P--VIKVEKAHDADLHCVDWNPLDDNLILTGSA  157 (309)
Q Consensus        91 ~~~v~~~~~~~~~~~~l~----s~~~dg~i~iwd~~~~-----~~--~--~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~  157 (309)
                      ...|.+++|+|++ .+|+    +|+.|+.|++||+.+.     +.  +  ....+.+|...|.+++|+|..+.+|++++.
T Consensus        92 ~~~v~~l~~spdg-~~lav~~~sgs~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~las~s~  170 (434)
T 2oit_A           92 KFPIHHLALSCDN-LTLSACMMSSEYGSIIAFFDVRTFSNEAKQQKRPFAYHKLLKDAGGMVIDMKWNPTVPSMVAVCLA  170 (434)
T ss_dssp             SSCEEEEEECTTS-CEEEEEEEETTTEEEEEEEEHHHHHCTTCSSCCCSEEEECCCSGGGSEEEEEECSSCTTEEEEEET
T ss_pred             CCcccEEEEcCCC-CEEEEEEeccCCCceEEEEEccccccCCcCCcceeeeeeccCCCCCceEEEEECCCCCCEEEEEEC
Confidence            6789999999998 6777    8889999999998654     11  0  134556789999999999944889999999


Q ss_pred             CCcEEEEecCCCCCCCCCCceeeeccCCCCeeEEEEecCCCcEEEEecCCCcEEEEeCCcccccccCCCCCcCCCCceee
Q 021657          158 DNSVRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFF  237 (309)
Q Consensus       158 dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~  237 (309)
                      ||+|++||+++      +..+.....|...|++++|+|+|.+ |++|+.||.|++||++. ...... ..       ...
T Consensus       171 Dg~v~iwD~~~------~~~~~~~~~~~~~v~~v~wspdg~~-lasgs~dg~v~iwd~~~-~~~~~~-~~-------~~~  234 (434)
T 2oit_A          171 DGSIAVLQVTE------TVKVCATLPSTVAVTSVCWSPKGKQ-LAVGKQNGTVVQYLPTL-QEKKVI-PC-------PPF  234 (434)
T ss_dssp             TSCEEEEEESS------SEEEEEEECGGGCEEEEEECTTSSC-EEEEETTSCEEEECTTC-CEEEEE-CC-------CTT
T ss_pred             CCeEEEEEcCC------CcceeeccCCCCceeEEEEcCCCCE-EEEEcCCCcEEEEccCC-cccccc-cC-------Ccc
Confidence            99999999998      6666666678889999999999997 56999999999999983 111000 00       000


Q ss_pred             eecCCCcceeeEEEccCCCeEEEEecCCCCCCCCCCeEEEEEccc
Q 021657          238 QHAGHRDKVVDFHWNASDPWTVVSVSDDCDSTGGGGTLQIWRMSD  282 (309)
Q Consensus       238 ~~~~~~~~v~~~~~~~~~~~~~~s~s~d~~s~~~dg~v~vw~~~~  282 (309)
                      ....|...|.++.|++++.++++..+.|. .-.....+++|++..
T Consensus       235 ~~~~~~~~v~~v~w~~~~~~l~~~~~~dg-~~~~~~~v~i~~l~~  278 (434)
T 2oit_A          235 YESDHPVRVLDVLWIGTYVFAIVYAAADG-TLETSPDVVMALLPK  278 (434)
T ss_dssp             CCTTSCEEEEEEEEEETTEEEEEEEETTC-CSSSCCEEEEEECCC
T ss_pred             cCCCCceeEEEEEEecCceEEEEEccCCC-ccCCCCceEEEEecc
Confidence            01134558999999997766555443320 001123499999984

>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A

Probab=99.94  E-value=1.2e-24  Score=179.28  Aligned_cols=169  Identities=12%  Similarity=0.145  Sum_probs=129.5

Q ss_pred             ceEEEEECCCCCEEE----EecCCCcEEEEeCCccccccccCCccccccCCCCceeecCCCCCCCCcccCCCCCcCcccc
Q 021657           11 AEFALAMCPTEPYVL----SGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGI   86 (309)
Q Consensus        11 ~V~~~~~~~~~~~l~----t~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   86 (309)
                      .|++++|+|++++|+    +|+.|+.|+|||+.+........                             .........
T Consensus        94 ~v~~l~~spdg~~lav~~~sgs~d~~v~iwd~~~~~~~~~~~-----------------------------~~~~~~~~~  144 (434)
T 2oit_A           94 PIHHLALSCDNLTLSACMMSSEYGSIIAFFDVRTFSNEAKQQ-----------------------------KRPFAYHKL  144 (434)
T ss_dssp             CEEEEEECTTSCEEEEEEEETTTEEEEEEEEHHHHHCTTCSS-----------------------------CCCSEEEEC
T ss_pred             cccEEEEcCCCCEEEEEEeccCCCceEEEEEccccccCCcCC-----------------------------cceeeeeec
Confidence            699999999999999    89999999999987531100000                             000112345


Q ss_pred             cccccCCeEEEEEecCCCcEEEEEcCCCeEEEEEcCCCCcceEEEeeccCCceeEEEeccCCCCeEEEEcCCCcEEEEec
Q 021657           87 YNGHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDR  166 (309)
Q Consensus        87 ~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~  166 (309)
                      +.+|...|.+++|+|+++.+|++++.||+|++||++++.  ......+|...|.+++|+| ++++|++|+.||.|++||+
T Consensus       145 ~~~h~~~V~~v~~~p~~~~~las~s~Dg~v~iwD~~~~~--~~~~~~~~~~~v~~v~wsp-dg~~lasgs~dg~v~iwd~  221 (434)
T 2oit_A          145 LKDAGGMVIDMKWNPTVPSMVAVCLADGSIAVLQVTETV--KVCATLPSTVAVTSVCWSP-KGKQLAVGKQNGTVVQYLP  221 (434)
T ss_dssp             CCSGGGSEEEEEECSSCTTEEEEEETTSCEEEEEESSSE--EEEEEECGGGCEEEEEECT-TSSCEEEEETTSCEEEECT
T ss_pred             cCCCCCceEEEEECCCCCCEEEEEECCCeEEEEEcCCCc--ceeeccCCCCceeEEEEcC-CCCEEEEEcCCCcEEEEcc
Confidence            667999999999999855899999999999999998875  4555567889999999999 8999999999999999999


Q ss_pred             CCCCCCCCCCceeeecc-------CCCCeeEEEEecCCCcEEEEecCCCc------EEEEeCCcc
Q 021657          167 RNLTSNGVGSPINKFEG-------HSAAVLCVQWSPDKSSVFGSSAEDGL------LNIWDYEKV  218 (309)
Q Consensus       167 ~~~~~~~~~~~~~~~~~-------~~~~v~~~~~~~~~~~l~~~~~~dg~------i~iwd~~~~  218 (309)
                      +.       +....+..       |...+.+++|++++.++++....||.      +++|++++.
T Consensus       222 ~~-------~~~~~~~~~~~~~~~~~~~v~~v~w~~~~~~l~~~~~~dg~~~~~~~v~i~~l~~~  279 (434)
T 2oit_A          222 TL-------QEKKVIPCPPFYESDHPVRVLDVLWIGTYVFAIVYAAADGTLETSPDVVMALLPKK  279 (434)
T ss_dssp             TC-------CEEEEECCCTTCCTTSCEEEEEEEEEETTEEEEEEEETTCCSSSCCEEEEEECCCT
T ss_pred             CC-------cccccccCCcccCCCCceeEEEEEEecCceEEEEEccCCCccCCCCceEEEEeccC
Confidence            82       22333332       23378999999998866555555543      899999873

>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}

Probab=99.94  E-value=3.1e-25  Score=174.04  Aligned_cols=234  Identities=15%  Similarity=0.106  Sum_probs=163.3

Q ss_pred             ccCCCCCcceEEEEECCCCCEEEEecCCCcEEEEeCCc-cccccccCCccccccCCCCceeecCCCCCCCCcccCCCCCc
Q 021657            3 ILTGHQDNAEFALAMCPTEPYVLSGGKDKSVVLWSIQD-HITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSV   81 (309)
Q Consensus         3 ~l~~H~~~~V~~~~~~~~~~~l~t~~~dg~i~vwd~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (309)
                      .+..|.+ .|.+++|+|++++|++++ ++.|++||+.+ +.                                       
T Consensus        36 ~~~~~~~-~v~~~~~spdg~~l~~~~-~~~i~~~d~~~~~~---------------------------------------   74 (297)
T 2ojh_A           36 VVWQTPE-LFEAPNWSPDGKYLLLNS-EGLLYRLSLAGDPS---------------------------------------   74 (297)
T ss_dssp             EEEEESS-CCEEEEECTTSSEEEEEE-TTEEEEEESSSCCS---------------------------------------
T ss_pred             eeccCCc-ceEeeEECCCCCEEEEEc-CCeEEEEeCCCCCC---------------------------------------
Confidence            3456777 799999999999999887 88999999975 31                                       


Q ss_pred             Ccccccccc-cCCeEEEEEecCCCcEEEEEc--CCCeEEEEEc--CCCCcceEEEeeccCCceeEEEeccCCCCeEE-EE
Q 021657           82 GPRGIYNGH-EDTVEDVTFCPSSAQEFCSVG--DDSCLILWDA--RVGTSPVIKVEKAHDADLHCVDWNPLDDNLIL-TG  155 (309)
Q Consensus        82 ~~~~~~~~~-~~~v~~~~~~~~~~~~l~s~~--~dg~i~iwd~--~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~-~~  155 (309)
                       .......+ ...+.+++|+|++ .+|++++  .++...||.+  ..+.   ...+.. ...+..++|+| +++.|+ ++
T Consensus        75 -~~~~~~~~~~~~~~~~~~spdg-~~l~~~~~~~~~~~~l~~~~~~~~~---~~~~~~-~~~~~~~~~sp-dg~~l~~~~  147 (297)
T 2ojh_A           75 -PEKVDTGFATICNNDHGISPDG-ALYAISDKVEFGKSAIYLLPSTGGT---PRLMTK-NLPSYWHGWSP-DGKSFTYCG  147 (297)
T ss_dssp             -CEECCCTTCCCBCSCCEECTTS-SEEEEEECTTTSSCEEEEEETTCCC---CEECCS-SSSEEEEEECT-TSSEEEEEE
T ss_pred             -ceEeccccccccccceEECCCC-CEEEEEEeCCCCcceEEEEECCCCc---eEEeec-CCCccceEECC-CCCEEEEEE
Confidence             11222233 3678899999999 6777777  3345555554  4443   233333 33588999999 888776 77


Q ss_pred             cCCCcEEEEecCCCCCCCCCCceeeeccCCCCeeEEEEecCCCcEEEEecCCCcEEEEeCCcccccccCCCCCcCCCCce
Q 021657          156 SADNSVRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGL  235 (309)
Q Consensus       156 ~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~  235 (309)
                      ..++.+++|+++..     ......+..+...+.+++|+|+++.+++++..++.+++|+++..+.              .
T Consensus       148 ~~~~~~~l~~~~~~-----~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~i~~~~~~~~--------------~  208 (297)
T 2ojh_A          148 IRDQVFDIYSMDID-----SGVETRLTHGEGRNDGPDYSPDGRWIYFNSSRTGQMQIWRVRVDGS--------------S  208 (297)
T ss_dssp             EETTEEEEEEEETT-----TCCEEECCCSSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTSS--------------C
T ss_pred             CCCCceEEEEEECC-----CCcceEcccCCCccccceECCCCCEEEEEecCCCCccEEEECCCCC--------------C
Confidence            88999999997542     3345566667788999999999998766666789999999874221              2


Q ss_pred             eeeecCCCcceeeEEEccCCCeEEEEecCCCCCCC-----CCCeEEEEEccccccCChhhHhHhhhcccceEEEeeeCC
Q 021657          236 FFQHAGHRDKVVDFHWNASDPWTVVSVSDDCDSTG-----GGGTLQIWRMSDLIYRPQDEVLAELEKFKAHVISCTSKP  309 (309)
Q Consensus       236 ~~~~~~~~~~v~~~~~~~~~~~~~~s~s~d~~s~~-----~dg~v~vw~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~P  309 (309)
                      ...+..|...+..++|+|++.++++.+.++  ...     .++.|++||+...    ....+..+.+|...+..++|+|
T Consensus       209 ~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~--~~~~~~~~~~~~l~~~d~~~~----~~~~~~~~~~~~~~~~~~~~sp  281 (297)
T 2ojh_A          209 VERITDSAYGDWFPHPSPSGDKVVFVSYDA--DVFDHPRDLDVRVQLMDMDGG----NVETLFDLFGGQGTMNSPNWSP  281 (297)
T ss_dssp             EEECCCCSEEEEEEEECTTSSEEEEEEEET--TCCSCCSSEEEEEEEEETTSC----SCEEEEEEEESTTTSCSCCBCT
T ss_pred             cEEEecCCcccCCeEECCCCCEEEEEEcCC--CCCcccccCceEEEEEecCCC----CceeeeccCCCCcccccceECC
Confidence            344556777899999999998877654432  000     2367999999832    1122344456777888888876

>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*

Probab=99.93  E-value=2e-23  Score=168.12  Aligned_cols=258  Identities=9%  Similarity=0.071  Sum_probs=182.7

Q ss_pred             ceEEEEECCCCCEEEEecC-------CCcEEEEeCCccccccccCC---ccccccCCCCceeecCCCCCCCCcccCCCCC
Q 021657           11 AEFALAMCPTEPYVLSGGK-------DKSVVLWSIQDHITSSATDP---ATAKSAGSSGSIIKQSPKPGDGNDKAADGPS   80 (309)
Q Consensus        11 ~V~~~~~~~~~~~l~t~~~-------dg~i~vwd~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (309)
                      .+..++|+|+++++++++.       ++.|.+||..++........   ............ .+.....++.+.+|+..+
T Consensus        42 ~~~~~~~s~dg~~l~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~s~dg~~-l~v~~~~~~~v~~~d~~~  120 (353)
T 3vgz_A           42 GAYEMAYSQQENALWLATSQSRKLDKGGVVYRLDPVTLEVTQAIHNDLKPFGATINNTTQT-LWFGNTVNSAVTAIDAKT  120 (353)
T ss_dssp             SEEEEEEETTTTEEEEEECCCTTTEESEEEEEECTTTCCEEEEEEESSCCCSEEEETTTTE-EEEEETTTTEEEEEETTT
T ss_pred             CccceEECCCCCEEEEEcCCCcCCCCCccEEEEcCCCCeEEEEEecCCCcceEEECCCCCE-EEEEecCCCEEEEEeCCC
Confidence            4679999999998887764       56899999987743332211   111111112111 112223356788888888


Q ss_pred             cCcccccccccCC---------eEEEEEecCCCcEEEEE-cCCCeEEEEEcCCCCcceEEEeeccCCceeEEEeccCCCC
Q 021657           81 VGPRGIYNGHEDT---------VEDVTFCPSSAQEFCSV-GDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDN  150 (309)
Q Consensus        81 ~~~~~~~~~~~~~---------v~~~~~~~~~~~~l~s~-~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~  150 (309)
                      .+.+..+..+...         +.++.|+|++..+++++ +.++.|.+||..+++  ....+..+...+.+++|+| +++
T Consensus       121 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~i~~~d~~~~~--~~~~~~~~~~~~~~~~~s~-dg~  197 (353)
T 3vgz_A          121 GEVKGRLVLDDRKRTEEVRPLQPRELVADDATNTVYISGIGKESVIWVVDGGNIK--LKTAIQNTGKMSTGLALDS-EGK  197 (353)
T ss_dssp             CCEEEEEESCCCCCCSSCCCCEEEEEEEETTTTEEEEEEESSSCEEEEEETTTTE--EEEEECCCCTTCCCCEEET-TTT
T ss_pred             CeeEEEEecCCCccccccCCCCCceEEECCCCCEEEEEecCCCceEEEEcCCCCc--eEEEecCCCCccceEEECC-CCC
Confidence            8877666554322         78899999995444444 358899999998877  5555554566689999999 999


Q ss_pred             eEEEEcCCCcEEEEecCCCCCCCCCCceeeecc----CCCCeeEEEEecCCCcEEEEecCCCcEEEEeCCcccccccCCC
Q 021657          151 LILTGSADNSVRMFDRRNLTSNGVGSPINKFEG----HSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGP  226 (309)
Q Consensus       151 ~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~----~~~~v~~~~~~~~~~~l~~~~~~dg~i~iwd~~~~~~~~~~~~  226 (309)
                      .+++++.++.|.+||+.+      ++.+..+..    +...+..++|+|++++++++...++.|.+||+.+.        
T Consensus       198 ~l~~~~~~~~i~~~d~~~------~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~--------  263 (353)
T 3vgz_A          198 RLYTTNADGELITIDTAD------NKILSRKKLLDDGKEHFFINISLDTARQRAFITDSKAAEVLVVDTRNG--------  263 (353)
T ss_dssp             EEEEECTTSEEEEEETTT------TEEEEEEECCCSSSCCCEEEEEEETTTTEEEEEESSSSEEEEEETTTC--------
T ss_pred             EEEEEcCCCeEEEEECCC------CeEEEEEEcCCCCCCcccceEEECCCCCEEEEEeCCCCEEEEEECCCC--------
Confidence            999999999999999998      777766654    45567889999999988777777799999999762        


Q ss_pred             CCcCCCCceeeeecCCCcceeeEEEccCCCeEEEEecCCCCCCCCCCeEEEEEccccccCChhhHhHhhhcccceEEEee
Q 021657          227 RTTNYPAGLFFQHAGHRDKVVDFHWNASDPWTVVSVSDDCDSTGGGGTLQIWRMSDLIYRPQDEVLAELEKFKAHVISCT  306 (309)
Q Consensus       227 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~s~d~~s~~~dg~v~vw~~~~~~~~~~~~~~~~~~~h~~~v~~~~  306 (309)
                             +.+..+....  ...++|+|++.+++++...+       +.|.+||+.      +++.+..+.. ...+.+++
T Consensus       264 -------~~~~~~~~~~--~~~~~~s~dg~~l~v~~~~~-------~~v~~~d~~------~~~~~~~~~~-~~~~~~~~  320 (353)
T 3vgz_A          264 -------NILAKVAAPE--SLAVLFNPARNEAYVTHRQA-------GKVSVIDAK------SYKVVKTFDT-PTHPNSLA  320 (353)
T ss_dssp             -------CEEEEEECSS--CCCEEEETTTTEEEEEETTT-------TEEEEEETT------TTEEEEEEEC-CSEEEEEE
T ss_pred             -------cEEEEEEcCC--CceEEECCCCCEEEEEECCC-------CeEEEEECC------CCeEEEEEec-CCCCCeEE
Confidence                   2222222222  25799999999888766555       899999998      5666655553 34678888


Q ss_pred             eCC
Q 021657          307 SKP  309 (309)
Q Consensus       307 ~~P  309 (309)
                      |+|
T Consensus       321 ~s~  323 (353)
T 3vgz_A          321 LSA  323 (353)
T ss_dssp             ECT
T ss_pred             EcC
Confidence            876

>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*

Probab=99.92  E-value=2.6e-23  Score=175.91  Aligned_cols=225  Identities=9%  Similarity=0.058  Sum_probs=163.2

Q ss_pred             eEEEEECCCCCEEEEecCCCcEEEEeC--CccccccccCCccccccCCCCceeecCCCCCCCCcccCCCCCcCccccccc
Q 021657           12 EFALAMCPTEPYVLSGGKDKSVVLWSI--QDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNG   89 (309)
Q Consensus        12 V~~~~~~~~~~~l~t~~~dg~i~vwd~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   89 (309)
                      +.+++|+|+|++|++++.|++|++||+  .+.                                        +.+..+. 
T Consensus       181 ~~~v~~spdg~~l~v~~~d~~V~v~D~~~~t~----------------------------------------~~~~~i~-  219 (543)
T 1nir_A          181 VHISRMSASGRYLLVIGRDARIDMIDLWAKEP----------------------------------------TKVAEIK-  219 (543)
T ss_dssp             EEEEEECTTSCEEEEEETTSEEEEEETTSSSC----------------------------------------EEEEEEE-
T ss_pred             cceEEECCCCCEEEEECCCCeEEEEECcCCCC----------------------------------------cEEEEEe-
Confidence            789999999999999999999999999  432                                        2233344 


Q ss_pred             ccCCeEEEEEec----CCCcEEEEEc-CCCeEEEEEcCCCCcceEEEeec----------cC-CceeEEEeccCCCCeEE
Q 021657           90 HEDTVEDVTFCP----SSAQEFCSVG-DDSCLILWDARVGTSPVIKVEKA----------HD-ADLHCVDWNPLDDNLIL  153 (309)
Q Consensus        90 ~~~~v~~~~~~~----~~~~~l~s~~-~dg~i~iwd~~~~~~~~~~~~~~----------~~-~~v~~~~~~~~~~~~l~  153 (309)
                      +...+..++|+|    +| +++++++ .+++|.+||..+.+  ....+..          |. ..+.++.++|....+++
T Consensus       220 ~g~~p~~va~sp~~~~dg-~~l~v~~~~~~~v~v~D~~t~~--~~~~i~~~g~~~~~~~~~~~~~v~~i~~s~~~~~~~v  296 (543)
T 1nir_A          220 IGIEARSVESSKFKGYED-RYTIAGAYWPPQFAIMDGETLE--PKQIVSTRGMTVDTQTYHPEPRVAAIIASHEHPEFIV  296 (543)
T ss_dssp             CCSEEEEEEECCSTTCTT-TEEEEEEEESSEEEEEETTTCC--EEEEEECCEECSSSCCEESCCCEEEEEECSSSSEEEE
T ss_pred             cCCCcceEEeCCCcCCCC-CEEEEEEccCCeEEEEeccccc--cceeecccCcccCccccccCCceEEEEECCCCCEEEE
Confidence            345678999999    98 5666666 58999999998887  4554433          22 36889999994455677


Q ss_pred             EEcCCCcEEEEecCCCCCCCCCCcee--eeccCCCCeeEEEEecCCCcEEEEecCCCcEEEEeCCcccccccCCCCCcCC
Q 021657          154 TGSADNSVRMFDRRNLTSNGVGSPIN--KFEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNY  231 (309)
Q Consensus       154 ~~~~dg~i~i~d~~~~~~~~~~~~~~--~~~~~~~~v~~~~~~~~~~~l~~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~  231 (309)
                      +...++.|.+||+.+      .+.+.  .+. +...+..++|+|+|+++++++..++.|.+||+.+ +            
T Consensus       297 s~~~~g~i~vvd~~~------~~~l~~~~i~-~~~~~~~~~~spdg~~l~va~~~~~~v~v~D~~t-g------------  356 (543)
T 1nir_A          297 NVKETGKVLLVNYKD------IDNLTVTSIG-AAPFLHDGGWDSSHRYFMTAANNSNKVAVIDSKD-R------------  356 (543)
T ss_dssp             EETTTTEEEEEECTT------SSSCEEEEEE-CCSSCCCEEECTTSCEEEEEEGGGTEEEEEETTT-T------------
T ss_pred             EECCCCeEEEEEecC------CCcceeEEec-cCcCccCceECCCCCEEEEEecCCCeEEEEECCC-C------------
Confidence            778899999999987      33333  443 4567889999999998887888899999999987 2            


Q ss_pred             CCceeeeecC----CCcceeeEEEccCCCeEEEEecCCCCCCCCCCeEEEEEccccc-cCChhhHhHhhhcccceEEEee
Q 021657          232 PAGLFFQHAG----HRDKVVDFHWNASDPWTVVSVSDDCDSTGGGGTLQIWRMSDLI-YRPQDEVLAELEKFKAHVISCT  306 (309)
Q Consensus       232 ~~~~~~~~~~----~~~~v~~~~~~~~~~~~~~s~s~d~~s~~~dg~v~vw~~~~~~-~~~~~~~~~~~~~h~~~v~~~~  306 (309)
                        +++..+..    |......+ ++|++..++++++.      .|++|.+||+.... .....+++++++.|.+.+..++
T Consensus       357 --~l~~~i~~g~~ph~g~g~~~-~~p~~g~~~~s~~~------~d~~V~v~d~~~~~~~~~~~~~v~~l~~~g~~~~~v~  427 (543)
T 1nir_A          357 --RLSALVDVGKTPHPGRGANF-VHPKYGPVWSTSHL------GDGSISLIGTDPKNHPQYAWKKVAELQGQGGGSLFIK  427 (543)
T ss_dssp             --EEEEEEECSSSBCCTTCEEE-EETTTEEEEEEEBS------SSSEEEEEECCTTTCTTTBTSEEEEEECSCSCCCCEE
T ss_pred             --eEEEeeccCCCCCCCCCccc-CCCCCccEEEeccC------CCceEEEEEeCCCCCchhcCeEEEEEEcCCCCceEEE
Confidence              22223322    44333333 47876677776541      23899999998310 0111678888998888888888


Q ss_pred             eCC
Q 021657          307 SKP  309 (309)
Q Consensus       307 ~~P  309 (309)
                      +||
T Consensus       428 ~~p  430 (543)
T 1nir_A          428 THP  430 (543)
T ss_dssp             CCT
T ss_pred             cCC
Confidence            887

>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}

Probab=99.92  E-value=2.2e-22  Score=160.59  Aligned_cols=246  Identities=10%  Similarity=0.000  Sum_probs=164.7

Q ss_pred             CCCCCcceEEEEECCCCCEEEEecC-CCcEEEEeCCcccc-cccc----CCccccccCCCCceeecCCCCCCC--CcccC
Q 021657            5 TGHQDNAEFALAMCPTEPYVLSGGK-DKSVVLWSIQDHIT-SSAT----DPATAKSAGSSGSIIKQSPKPGDG--NDKAA   76 (309)
Q Consensus         5 ~~H~~~~V~~~~~~~~~~~l~t~~~-dg~i~vwd~~~~~~-~~~~----~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~   76 (309)
                      ..+.. .+ .++|+|++++|++++. ++.|.+||+.++.. ....    .+............... ......  .+.+|
T Consensus        37 ~~~~~-~~-~~~~s~dg~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~-~~~~~~~~~i~v~  113 (331)
T 3u4y_A           37 TLGYD-FV-DTAITSDCSNVVVTSDFCQTLVQIETQLEPPKVVAIQEGQSSMADVDITPDDQFAVT-VTGLNHPFNMQSY  113 (331)
T ss_dssp             ECCCC-EE-EEEECSSSCEEEEEESTTCEEEEEECSSSSCEEEEEEECSSCCCCEEECTTSSEEEE-CCCSSSSCEEEEE
T ss_pred             EccCC-cc-eEEEcCCCCEEEEEeCCCCeEEEEECCCCceeEEecccCCCCccceEECCCCCEEEE-ecCCCCcccEEEE
Confidence            33444 56 9999999997665554 89999999987653 2111    11110122222222222 222223  89999


Q ss_pred             CCCCcCcccccccccCCeEEEEEecCCCcEEEEEcCCCe-EEEEEcCCCCcceE--EEeeccCCceeEEEeccCCCCeE-
Q 021657           77 DGPSVGPRGIYNGHEDTVEDVTFCPSSAQEFCSVGDDSC-LILWDARVGTSPVI--KVEKAHDADLHCVDWNPLDDNLI-  152 (309)
Q Consensus        77 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~-i~iwd~~~~~~~~~--~~~~~~~~~v~~~~~~~~~~~~l-  152 (309)
                      +..+.+.+..+..+ ....+++|+|+|..++++...++. |.+|++........  ............++|+| +++++ 
T Consensus       114 d~~~~~~~~~~~~~-~~~~~~~~spdg~~l~~~~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~sp-dg~~l~  191 (331)
T 3u4y_A          114 SFLKNKFISTIPIP-YDAVGIAISPNGNGLILIDRSSANTVRRFKIDADGVLFDTGQEFISGGTRPFNITFTP-DGNFAF  191 (331)
T ss_dssp             ETTTTEEEEEEECC-TTEEEEEECTTSSCEEEEEETTTTEEEEEEECTTCCEEEEEEEEECSSSSEEEEEECT-TSSEEE
T ss_pred             ECCCCCeEEEEECC-CCccceEECCCCCEEEEEecCCCceEEEEEECCCCcEeecCCccccCCCCccceEECC-CCCEEE
Confidence            99888777766544 456899999999556666677788 99999975442111  11223445689999999 88854 


Q ss_pred             EEEcCCCcEEEEecCCCCCCCCCCc---eeeeccCCCCeeEEEEecCCCcEEEEecCCCcEEEEeCCcccccccCCCCCc
Q 021657          153 LTGSADNSVRMFDRRNLTSNGVGSP---INKFEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTT  229 (309)
Q Consensus       153 ~~~~~dg~i~i~d~~~~~~~~~~~~---~~~~~~~~~~v~~~~~~~~~~~l~~~~~~dg~i~iwd~~~~~~~~~~~~~~~  229 (309)
                      +++..++.|++||+.+      ++.   +..+.. ...+..++|+|+|++++++...++.|.+||+.+ ++...      
T Consensus       192 v~~~~~~~v~v~d~~~------~~~~~~~~~~~~-~~~~~~~~~spdg~~l~v~~~~~~~i~~~d~~~-~~~~~------  257 (331)
T 3u4y_A          192 VANLIGNSIGILETQN------PENITLLNAVGT-NNLPGTIVVSRDGSTVYVLTESTVDVFNFNQLS-GTLSF------  257 (331)
T ss_dssp             EEETTTTEEEEEECSS------TTSCEEEEEEEC-SSCCCCEEECTTSSEEEEECSSEEEEEEEETTT-TEEEE------
T ss_pred             EEeCCCCeEEEEECCC------CcccceeeeccC-CCCCceEEECCCCCEEEEEEcCCCEEEEEECCC-Cceee------
Confidence            5555689999999988      666   666664 456789999999998777777788999999986 22100      


Q ss_pred             CCCCceeeeec----CCCc---ceeeEEEccCCCeEEEEecCCCCCCCCCCeEEEEEccc
Q 021657          230 NYPAGLFFQHA----GHRD---KVVDFHWNASDPWTVVSVSDDCDSTGGGGTLQIWRMSD  282 (309)
Q Consensus       230 ~~~~~~~~~~~----~~~~---~v~~~~~~~~~~~~~~s~s~d~~s~~~dg~v~vw~~~~  282 (309)
                            +..+.    .+..   ....++|+|++.++++++..+       +.|.+||+..
T Consensus       258 ------~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~-------~~v~v~d~~~  304 (331)
T 3u4y_A          258 ------VKSFGHGLLIDPRPLFGANQMALNKTETKLFISANIS-------RELKVFTISG  304 (331)
T ss_dssp             ------EEEEECCCCCCCGGGTTCCCEEECTTSSEEEEEETTT-------TEEEEEETTS
T ss_pred             ------ecccccccccCCCCcccccceEECCCCCEEEEecCCC-------CcEEEEEecC
Confidence                  11111    1112   225689999999988866655       8999999984

>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1

Probab=99.92  E-value=8.1e-23  Score=163.77  Aligned_cols=242  Identities=8%  Similarity=0.071  Sum_probs=153.9

Q ss_pred             CCCcceEEEEECCCCCEEEEecCC-CcEEEEeCCccccccccCCccccccCCCCceeecCCCCCCCCcccCCCCCcCccc
Q 021657            7 HQDNAEFALAMCPTEPYVLSGGKD-KSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRG   85 (309)
Q Consensus         7 H~~~~V~~~~~~~~~~~l~t~~~d-g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   85 (309)
                      |.. .+.+++|+|++++|++++.+ +.|++|++....                                    .....+.
T Consensus        36 ~~~-~~~~~~~spdg~~l~~~~~~~~~v~~~~~~~~~------------------------------------~~~~~~~   78 (343)
T 1ri6_A           36 VPG-QVQPMVVSPDKRYLYVGVRPEFRVLAYRIAPDD------------------------------------GALTFAA   78 (343)
T ss_dssp             CSS-CCCCEEECTTSSEEEEEETTTTEEEEEEECTTT------------------------------------CCEEEEE
T ss_pred             cCC-CCceEEECCCCCEEEEeecCCCeEEEEEecCCC------------------------------------Cceeecc
Confidence            455 57899999999988888876 999999986210                                    0111122


Q ss_pred             ccccccCCeEEEEEecCCCcEEEEEcCCCeEEEEEcCCCCc-ceEEEeeccCCceeEEEeccCCCCeEEEEc-CCCcEEE
Q 021657           86 IYNGHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTS-PVIKVEKAHDADLHCVDWNPLDDNLILTGS-ADNSVRM  163 (309)
Q Consensus        86 ~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~-~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~-~dg~i~i  163 (309)
                      .+..+. .+..++|+|++..+++++..++.|.+||+..+.. ...... .....+.+++|+| +++++++++ .++.|++
T Consensus        79 ~~~~~~-~~~~~~~s~dg~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~-~~~~~~~~~~~s~-dg~~l~~~~~~~~~v~~  155 (343)
T 1ri6_A           79 ESALPG-SLTHISTDHQGQFVFVGSYNAGNVSVTRLEDGLPVGVVDVV-EGLDGCHSANISP-DNRTLWVPALKQDRICL  155 (343)
T ss_dssp             EEECSS-CCSEEEECTTSSEEEEEETTTTEEEEEEEETTEEEEEEEEE-CCCTTBCCCEECT-TSSEEEEEEGGGTEEEE
T ss_pred             ccccCC-CCcEEEEcCCCCEEEEEecCCCeEEEEECCCCccccccccc-cCCCCceEEEECC-CCCEEEEecCCCCEEEE
Confidence            233233 6789999999944555666689999999953221 123333 3345689999999 888777776 8999999


Q ss_pred             EecCCCCCCCCCCcee--eecc-CCCCeeEEEEecCCCcEEEEecCCCcEEEEeCCcccccccCCCCCcCCCCceeeeec
Q 021657          164 FDRRNLTSNGVGSPIN--KFEG-HSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHA  240 (309)
Q Consensus       164 ~d~~~~~~~~~~~~~~--~~~~-~~~~v~~~~~~~~~~~l~~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~  240 (309)
                      ||+.+...   ...+.  .+.. ....+..++|+|+++++++++..++.|.+|++.........        ...+....
T Consensus       156 ~d~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~pdg~~l~~~~~~~~~i~~~~~~~~~g~~~~--------~~~~~~~~  224 (343)
T 1ri6_A          156 FTVSDDGH---LVAQDPAEVTTVEGAGPRHMVFHPNEQYAYCVNELNSSVDVWELKDPHGNIEC--------VQTLDMMP  224 (343)
T ss_dssp             EEECTTSC---EEEEEEEEEECSTTCCEEEEEECTTSSEEEEEETTTTEEEEEESSCTTSCCEE--------EEEEECSC
T ss_pred             EEecCCCc---eeeecccccccCCCCCcceEEECCCCCEEEEEeCCCCEEEEEEecCCCCcEEE--------EeeccccC
Confidence            99986210   11111  2222 34578899999999987777778999999999642111000        00111111


Q ss_pred             -C--CCcceeeEEEccCCCeEEEEecCCCCCCCCCCeEEEEEccccccCChhhHhHhhhcccceEEEeeeCC
Q 021657          241 -G--HRDKVVDFHWNASDPWTVVSVSDDCDSTGGGGTLQIWRMSDLIYRPQDEVLAELEKFKAHVISCTSKP  309 (309)
Q Consensus       241 -~--~~~~v~~~~~~~~~~~~~~s~s~d~~s~~~dg~v~vw~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~P  309 (309)
                       +  ....+..++|+|++.+++++.+.|       +.|.+|++....  ...+.+..+..+.. +..++|+|
T Consensus       225 ~~~~~~~~~~~i~~s~dg~~l~v~~~~~-------~~i~v~d~~~~~--~~~~~~~~~~~~~~-~~~~~~s~  286 (343)
T 1ri6_A          225 ENFSDTRWAADIHITPDGRHLYACDRTA-------SLITVFSVSEDG--SVLSKEGFQPTETQ-PRGFNVDH  286 (343)
T ss_dssp             TTCCSCCCEEEEEECTTSSEEEEEETTT-------TEEEEEEECTTS--CCEEEEEEEECSSS-CCCEEECT
T ss_pred             ccccccCCccceEECCCCCEEEEEecCC-------CEEEEEEEcCCC--CceEEeeeecCCCc-cceEEECC
Confidence             1  133567899999999888766555       999999997210  01222333333333 56666665

>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}

Probab=99.91  E-value=9.2e-23  Score=179.92  Aligned_cols=257  Identities=12%  Similarity=0.058  Sum_probs=170.8

Q ss_pred             ceEEEEECCCCCEEEEecC-CC-----cEEEEeCCccccccccCC----------------------------ccccccC
Q 021657           11 AEFALAMCPTEPYVLSGGK-DK-----SVVLWSIQDHITSSATDP----------------------------ATAKSAG   56 (309)
Q Consensus        11 ~V~~~~~~~~~~~l~t~~~-dg-----~i~vwd~~~~~~~~~~~~----------------------------~~~~~~~   56 (309)
                      .|.+++|+|||++|++++. |+     .|++||+.++........                            ......+
T Consensus        38 ~~~~~~~SpdG~~la~~~~~d~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~S  117 (741)
T 2ecf_A           38 TLMKPKVAPDGSRVTFLRGKDSDRNQLDLWSYDIGSGQTRLLVDSKVVLPGTETLSDEEKARRERQRIAAMTGIVDYQWS  117 (741)
T ss_dssp             CCEEEEECTTSSEEEEEECCSSCTTEEEEEEEETTTCCEEEEECGGGTC--------------------CCEESCCCEEC
T ss_pred             CCCCceEecCCCEEEEEeccCCCCcccEEEEEECCCCceeEccchhhcccccccccchhhhhhhhhhhccccCcceeEEC
Confidence            5899999999999999998 88     899999988743221111                            0111122


Q ss_pred             CCCceeecCCCCCCCCcccCCCCCcC--cccccccccCCeEEEEEecCCCcEEEEEcCCCeEEEEEcCCCCcceEEEeec
Q 021657           57 SSGSIIKQSPKPGDGNDKAADGPSVG--PRGIYNGHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPVIKVEKA  134 (309)
Q Consensus        57 ~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~  134 (309)
                      .......+...   +.+.+|+..+..  ....+..|...+..++|+|+| +.|+.++ ++.|++||+.+++  .......
T Consensus       118 pDg~~l~~~~~---~~i~~~d~~~~~~~~~~~l~~~~~~~~~~~~SPDG-~~la~~~-~~~i~~~d~~~g~--~~~~~~~  190 (741)
T 2ecf_A          118 PDAQRLLFPLG---GELYLYDLKQEGKAAVRQLTHGEGFATDAKLSPKG-GFVSFIR-GRNLWVIDLASGR--QMQLTAD  190 (741)
T ss_dssp             TTSSEEEEEET---TEEEEEESSSCSTTSCCBCCCSSSCEEEEEECTTS-SEEEEEE-TTEEEEEETTTTE--EEECCCC
T ss_pred             CCCCEEEEEeC---CcEEEEECCCCCcceEEEcccCCcccccccCCCCC-CEEEEEe-CCcEEEEecCCCC--EEEeccC
Confidence            22222222211   778888887763  445677788899999999999 6677776 4689999998766  3333322


Q ss_pred             cCCc----------------eeEEEeccCCCCeEEEEcCCC---------------------------------cEEEEe
Q 021657          135 HDAD----------------LHCVDWNPLDDNLILTGSADN---------------------------------SVRMFD  165 (309)
Q Consensus       135 ~~~~----------------v~~~~~~~~~~~~l~~~~~dg---------------------------------~i~i~d  165 (309)
                      +...                +.+++|+| ++++|++++.|+                                 .|++||
T Consensus       191 ~~~~~~~g~~~~v~~~~~~~~~~~~~Sp-Dg~~l~~~~~d~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~~~~l~~~d  269 (741)
T 2ecf_A          191 GSTTIGNGIAEFVADEEMDRHTGYWWAP-DDSAIAYARIDESPVPVQKRYEVYADRTDVIEQRYPAAGDANVQVKLGVIS  269 (741)
T ss_dssp             CCSSEEESCCCHHHHHHSCCCCSEEECT-TSSCEEEEEEECTTSCEEEEEEECSSCEEEEEEECCBTTSCCCEEEEEEEC
T ss_pred             CccceeccccceeeeeccccccceEECC-CCCEEEEEEEcCCCCceEecCCCCCCcccceEeecCCCCCCCCeeEEEEEE
Confidence            3222                47899999 999999987765                                 788889


Q ss_pred             cCC-CCCCCCCCceeeeccCCCCeeEEEEecCCCcEEEEec----CCCcEEEEeCCcccccccCCCCCcCCCCceeeeec
Q 021657          166 RRN-LTSNGVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSA----EDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHA  240 (309)
Q Consensus       166 ~~~-~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~----~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~  240 (309)
                      +.+ ..    ...+.....+...+..++| |||++|++++.    .+..|++||+.+. +              ......
T Consensus       270 ~~~~~~----~~~~~~~~~~~~~~~~~~~-pDg~~l~~~~~~~~~~~~~i~~~d~~~g-~--------------~~~~~~  329 (741)
T 2ecf_A          270 PAEQAQ----TQWIDLGKEQDIYLARVNW-RDPQHLSFQRQSRDQKKLDLVEVTLASN-Q--------------QRVLAH  329 (741)
T ss_dssp             SSTTCC----CEEECCCSCSSEEEEEEEE-EETTEEEEEEEETTSSEEEEEEEETTTC-C--------------EEEEEE
T ss_pred             CCCCCc----eEEecCCCCcceEEEEEEe-CCCCEEEEEEecccCCeEEEEEEECCCC-c--------------eEEEEE
Confidence            875 32    1111111146678999999 99998654432    3577999999872 1              222222


Q ss_pred             CCCc----ceeeEEEccCCCeEEEEecCCCCCCCCCCeEEEEEccccccCChhhHhHhhhcccceEEEe-eeCC
Q 021657          241 GHRD----KVVDFHWNASDPWTVVSVSDDCDSTGGGGTLQIWRMSDLIYRPQDEVLAELEKFKAHVISC-TSKP  309 (309)
Q Consensus       241 ~~~~----~v~~~~~~~~~~~~~~s~s~d~~s~~~dg~v~vw~~~~~~~~~~~~~~~~~~~h~~~v~~~-~~~P  309 (309)
                      .+..    .+..++|+|++. ++++++.|       |.++||.+..     .+. +..+..|...|..+ .|+|
T Consensus       330 ~~~~~~~~~~~~~~~spdg~-~~~~~~~~-------g~~~l~~~~~-----~~~-~~~l~~~~~~v~~~~~~s~  389 (741)
T 2ecf_A          330 ETSPTWVPLHNSLRFLDDGS-ILWSSERT-------GFQHLYRIDS-----KGK-AAALTHGNWSVDELLAVDE  389 (741)
T ss_dssp             EECSSCCCCCSCCEECTTSC-EEEEECTT-------SSCEEEEECS-----SSC-EEESCCSSSCEEEEEEEET
T ss_pred             cCCCCcCCcCCceEECCCCe-EEEEecCC-------CccEEEEEcC-----CCC-eeeeeecceEEEeEeEEeC
Confidence            2222    456899999988 56655544       8888888762     233 56677777778776 4776

>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}

Probab=99.90  E-value=1.4e-21  Score=155.97  Aligned_cols=220  Identities=10%  Similarity=0.108  Sum_probs=154.1

Q ss_pred             EEECCCCCE-EEEecCCCcEEEEeCCccccccccCCccccccCCCCceeecCCCCCCCCcccCCCCCcCcccccccccCC
Q 021657           15 LAMCPTEPY-VLSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDT   93 (309)
Q Consensus        15 ~~~~~~~~~-l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   93 (309)
                      ..|.+++.+ +++++.++.|++||+.++.                                        ....+..+...
T Consensus         3 ~~~~~~~~~~~v~~~~~~~v~~~d~~~~~----------------------------------------~~~~~~~~~~~   42 (331)
T 3u4y_A            3 AMFQTTSNFGIVVEQHLRRISFFSTDTLE----------------------------------------ILNQITLGYDF   42 (331)
T ss_dssp             ----CCCCEEEEEEGGGTEEEEEETTTCC----------------------------------------EEEEEECCCCE
T ss_pred             eeEcCCCCEEEEEecCCCeEEEEeCcccc----------------------------------------eeeeEEccCCc
Confidence            346665555 7788899999999997532                                        22233334455


Q ss_pred             eEEEEEecCCCcEEEEEcCCCeEEEEEcCCCCcceEEEeeccCCceeEEEeccCCCCeEEEEcCCC---cEEEEecCCCC
Q 021657           94 VEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADN---SVRMFDRRNLT  170 (309)
Q Consensus        94 v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg---~i~i~d~~~~~  170 (309)
                      + .++|+|++..+++++..++.|.+||+.+++. .......+..+..+++|+| ++++++++..++   .|.+||+.+  
T Consensus        43 ~-~~~~s~dg~~l~~~~~~~~~i~~~d~~~~~~-~~~~~~~~~~~~~~~~~s~-dg~~l~~~~~~~~~~~i~v~d~~~--  117 (331)
T 3u4y_A           43 V-DTAITSDCSNVVVTSDFCQTLVQIETQLEPP-KVVAIQEGQSSMADVDITP-DDQFAVTVTGLNHPFNMQSYSFLK--  117 (331)
T ss_dssp             E-EEEECSSSCEEEEEESTTCEEEEEECSSSSC-EEEEEEECSSCCCCEEECT-TSSEEEECCCSSSSCEEEEEETTT--
T ss_pred             c-eEEEcCCCCEEEEEeCCCCeEEEEECCCCce-eEEecccCCCCccceEECC-CCCEEEEecCCCCcccEEEEECCC--
Confidence            6 9999999955566666689999999988873 1555555666665699999 999888665553   899999998  


Q ss_pred             CCCCCCceeeeccCCCCeeEEEEecCCCcEEEEecCCCc-EEEEeCCcccccccCCCCCcCCCCceeeeecCCCcceeeE
Q 021657          171 SNGVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAEDGL-LNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKVVDF  249 (309)
Q Consensus       171 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~dg~-i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~  249 (309)
                          ++.+..+.. ......++|+|+|++++++...++. |.+|++...+....         ..  ............+
T Consensus       118 ----~~~~~~~~~-~~~~~~~~~spdg~~l~~~~~~~~~~i~~~~~~~~g~~~~---------~~--~~~~~~~~~~~~~  181 (331)
T 3u4y_A          118 ----NKFISTIPI-PYDAVGIAISPNGNGLILIDRSSANTVRRFKIDADGVLFD---------TG--QEFISGGTRPFNI  181 (331)
T ss_dssp             ----TEEEEEEEC-CTTEEEEEECTTSSCEEEEEETTTTEEEEEEECTTCCEEE---------EE--EEEECSSSSEEEE
T ss_pred             ----CCeEEEEEC-CCCccceEECCCCCEEEEEecCCCceEEEEEECCCCcEee---------cC--CccccCCCCccce
Confidence                777777764 4456899999999988877777788 99999986332211         00  1111334457899


Q ss_pred             EEccCCCeEEEEecCCCCCCCCCCeEEEEEccccccCChhhH---hHhhhcccceEEEeeeCC
Q 021657          250 HWNASDPWTVVSVSDDCDSTGGGGTLQIWRMSDLIYRPQDEV---LAELEKFKAHVISCTSKP  309 (309)
Q Consensus       250 ~~~~~~~~~~~s~s~d~~s~~~dg~v~vw~~~~~~~~~~~~~---~~~~~~h~~~v~~~~~~P  309 (309)
                      +|+|++.+++++...+       +.|++||+.      +++.   +..+.. ...+..++|+|
T Consensus       182 ~~spdg~~l~v~~~~~-------~~v~v~d~~------~~~~~~~~~~~~~-~~~~~~~~~sp  230 (331)
T 3u4y_A          182 TFTPDGNFAFVANLIG-------NSIGILETQ------NPENITLLNAVGT-NNLPGTIVVSR  230 (331)
T ss_dssp             EECTTSSEEEEEETTT-------TEEEEEECS------STTSCEEEEEEEC-SSCCCCEEECT
T ss_pred             EECCCCCEEEEEeCCC-------CeEEEEECC------CCcccceeeeccC-CCCCceEEECC
Confidence            9999999888866555       899999998      4444   444443 34556677765

>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}

Probab=99.90  E-value=8e-22  Score=158.44  Aligned_cols=232  Identities=12%  Similarity=0.125  Sum_probs=153.0

Q ss_pred             ceEEEEECCCCCEEEEecC---CCcEEEEeCCccccccccCCccccccCCCCceeecCCCCCCCCcccCCCCCcCccccc
Q 021657           11 AEFALAMCPTEPYVLSGGK---DKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIY   87 (309)
Q Consensus        11 ~V~~~~~~~~~~~l~t~~~---dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   87 (309)
                      .+..++|+|+|+ |++++.   ++.|++|++.++.                                      .+.+..+
T Consensus        41 ~p~~~a~spdg~-l~~~~~~~~~~~v~~~~~~~g~--------------------------------------~~~~~~~   81 (347)
T 3hfq_A           41 NPTYLALSAKDC-LYSVDKEDDEGGIAAWQIDGQT--------------------------------------AHKLNTV   81 (347)
T ss_dssp             CCCCEEECTTCE-EEEEEEETTEEEEEEEEEETTE--------------------------------------EEEEEEE
T ss_pred             CcceEEEccCCe-EEEEEecCCCceEEEEEecCCc--------------------------------------EEEeeee
Confidence            456899999999 554443   6899999996431                                      1122333


Q ss_pred             ccccCCeEEEEEecCCCcEEEEEc-CCCeEEEEEcCC-CCcceEEEeec---------cCCceeEEEeccCCCCeEEEEc
Q 021657           88 NGHEDTVEDVTFCPSSAQEFCSVG-DDSCLILWDARV-GTSPVIKVEKA---------HDADLHCVDWNPLDDNLILTGS  156 (309)
Q Consensus        88 ~~~~~~v~~~~~~~~~~~~l~s~~-~dg~i~iwd~~~-~~~~~~~~~~~---------~~~~v~~~~~~~~~~~~l~~~~  156 (309)
                      ..+...+..++|+|++ ++|++++ .++.|.+|++.. +..........         ....+.+++|+| +++++++..
T Consensus        82 ~~~~~~p~~~a~spdg-~~l~~~~~~~~~v~v~~~~~~g~~~~~~~~~~~~~~p~~~~~~~~~~~~~~sp-dg~l~v~~~  159 (347)
T 3hfq_A           82 VAPGTPPAYVAVDEAR-QLVYSANYHKGTAEVMKIAADGALTLTDTVQHSGHGPRPEQDGSHIHYTDLTP-DNRLAVIDL  159 (347)
T ss_dssp             EEESCCCSEEEEETTT-TEEEEEETTTTEEEEEEECTTSCEEEEEEEECCCCCSSTTCSSCCEEEEEECT-TSCEEEEET
T ss_pred             ecCCCCCEEEEECCCC-CEEEEEeCCCCEEEEEEeCCCCCeeecceeecCCCCCCccccCCCceEEEECC-CCcEEEEeC
Confidence            4466778899999999 5555555 789999999963 33222222221         122478899999 888777777


Q ss_pred             CCCcEEEEecCCCCCCCCCCc--eeeecc-CCCCeeEEEEecCCCcEEEEecCCCcEEEEeCCcccccccCCCCCcCCCC
Q 021657          157 ADNSVRMFDRRNLTSNGVGSP--INKFEG-HSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPA  233 (309)
Q Consensus       157 ~dg~i~i~d~~~~~~~~~~~~--~~~~~~-~~~~v~~~~~~~~~~~l~~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~  233 (309)
                      .++.|++||+...     ++.  +..+.. ....+..++|+|+|+++++++..++.|.+|++.......           
T Consensus       160 ~~~~v~~~~~~~~-----g~~~~~~~~~~~~g~~p~~~~~spdg~~l~v~~~~~~~v~v~~~~~~~g~~-----------  223 (347)
T 3hfq_A          160 GSDKVYVYNVSDA-----GQLSEQSVLTMEAGFGPRHLVFSPDGQYAFLAGELSSQIASLKYDTQTGAF-----------  223 (347)
T ss_dssp             TTTEEEEEEECTT-----SCEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTTEEEEEEEETTTTEE-----------
T ss_pred             CCCEEEEEEECCC-----CcEEEeeeEEcCCCCCCceEEECCCCCEEEEEeCCCCEEEEEEecCCCCce-----------
Confidence            7899999999831     322  222222 233678899999999888778889999999987511110           


Q ss_pred             ceeeeecCC------CcceeeEEEccCCCeEEEEecCCCCCCCCCCeEEEEEccccccCChhhHhHhhhcccceEEEeee
Q 021657          234 GLFFQHAGH------RDKVVDFHWNASDPWTVVSVSDDCDSTGGGGTLQIWRMSDLIYRPQDEVLAELEKFKAHVISCTS  307 (309)
Q Consensus       234 ~~~~~~~~~------~~~v~~~~~~~~~~~~~~s~s~d~~s~~~dg~v~vw~~~~~~~~~~~~~~~~~~~h~~~v~~~~~  307 (309)
                      ..+......      ...+..++|+|++.+++++...+       +.|.+|++....   ..+.+..+..+...+..++|
T Consensus       224 ~~~~~~~~~~~~~~~~~~~~~i~~spdG~~l~v~~~~~-------~~v~v~~~~~~g---~~~~~~~~~~~~~~~~~~~~  293 (347)
T 3hfq_A          224 TQLGIVKTIPADYTAHNGAAAIRLSHDGHFLYVSNRGY-------NTLAVFAVTADG---HLTLIQQISTEGDFPRDFDL  293 (347)
T ss_dssp             EEEEEEESSCTTCCSCCEEEEEEECTTSCEEEEEEETT-------TEEEEEEECGGG---CEEEEEEEECSSSCCCEEEE
T ss_pred             EEeeeeeecCCCCCCCCcceeEEECCCCCEEEEEeCCC-------CEEEEEEECCCC---cEEEeEEEecCCCCcCeEEE
Confidence            011111111      14588999999999888766555       899999997210   11334444445556777888


Q ss_pred             CC
Q 021657          308 KP  309 (309)
Q Consensus       308 ~P  309 (309)
                      +|
T Consensus       294 sp  295 (347)
T 3hfq_A          294 DP  295 (347)
T ss_dssp             CT
T ss_pred             CC
Confidence            76

>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}

Probab=99.90  E-value=8.9e-22  Score=154.26  Aligned_cols=187  Identities=13%  Similarity=0.148  Sum_probs=137.8

Q ss_pred             ccccccCCeEEEEEecCCCcEEEEEcCCCeEEEEEcCC-CCcceEEEeecc-CCceeEEEeccCCCCeEEEEc--CCCcE
Q 021657           86 IYNGHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARV-GTSPVIKVEKAH-DADLHCVDWNPLDDNLILTGS--ADNSV  161 (309)
Q Consensus        86 ~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~-~~~~~~~~~~~~-~~~v~~~~~~~~~~~~l~~~~--~dg~i  161 (309)
                      .+..|...|.+++|+|++ .+|++++ ++.|++||+.+ ++  .......+ ...+.+++|+| ++++|++++  .++..
T Consensus        36 ~~~~~~~~v~~~~~spdg-~~l~~~~-~~~i~~~d~~~~~~--~~~~~~~~~~~~~~~~~~sp-dg~~l~~~~~~~~~~~  110 (297)
T 2ojh_A           36 VVWQTPELFEAPNWSPDG-KYLLLNS-EGLLYRLSLAGDPS--PEKVDTGFATICNNDHGISP-DGALYAISDKVEFGKS  110 (297)
T ss_dssp             EEEEESSCCEEEEECTTS-SEEEEEE-TTEEEEEESSSCCS--CEECCCTTCCCBCSCCEECT-TSSEEEEEECTTTSSC
T ss_pred             eeccCCcceEeeEECCCC-CEEEEEc-CCeEEEEeCCCCCC--ceEeccccccccccceEECC-CCCEEEEEEeCCCCcc
Confidence            345578899999999999 6777775 78999999988 66  34444444 36789999999 999999988  34556


Q ss_pred             EEEecCCCCCCCCCCceeeeccCCCCeeEEEEecCCCcEEEEecCCCcEEEEeCCcccccccCCCCCcCCCCceeeeecC
Q 021657          162 RMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAG  241 (309)
Q Consensus       162 ~i~d~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~  241 (309)
                      .+|.+...     ......+..+ ..+..++|+|+++++++++..++.++||+++....              ....+..
T Consensus       111 ~l~~~~~~-----~~~~~~~~~~-~~~~~~~~spdg~~l~~~~~~~~~~~l~~~~~~~~--------------~~~~~~~  170 (297)
T 2ojh_A          111 AIYLLPST-----GGTPRLMTKN-LPSYWHGWSPDGKSFTYCGIRDQVFDIYSMDIDSG--------------VETRLTH  170 (297)
T ss_dssp             EEEEEETT-----CCCCEECCSS-SSEEEEEECTTSSEEEEEEEETTEEEEEEEETTTC--------------CEEECCC
T ss_pred             eEEEEECC-----CCceEEeecC-CCccceEECCCCCEEEEEECCCCceEEEEEECCCC--------------cceEccc
Confidence            66655431     2223444433 34889999999998776888899999999764221              1234456


Q ss_pred             CCcceeeEEEccCCCeEEEEecCCCCCCCCCCeEEEEEccccccCChhhHhHhhhcccceEEEeeeCC
Q 021657          242 HRDKVVDFHWNASDPWTVVSVSDDCDSTGGGGTLQIWRMSDLIYRPQDEVLAELEKFKAHVISCTSKP  309 (309)
Q Consensus       242 ~~~~v~~~~~~~~~~~~~~s~s~d~~s~~~dg~v~vw~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~P  309 (309)
                      +...+.+++|+|++..+++++..|       +.+++|++..     ....+..+..|...+..++|+|
T Consensus       171 ~~~~~~~~~~s~dg~~l~~~~~~~-------~~~~i~~~~~-----~~~~~~~~~~~~~~~~~~~~s~  226 (297)
T 2ojh_A          171 GEGRNDGPDYSPDGRWIYFNSSRT-------GQMQIWRVRV-----DGSSVERITDSAYGDWFPHPSP  226 (297)
T ss_dssp             SSSCEEEEEECTTSSEEEEEECTT-------SSCEEEEEET-----TSSCEEECCCCSEEEEEEEECT
T ss_pred             CCCccccceECCCCCEEEEEecCC-------CCccEEEECC-----CCCCcEEEecCCcccCCeEECC
Confidence            777899999999999888765545       8999999873     2344566777888899999987

>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A

Probab=99.90  E-value=1.5e-22  Score=173.82  Aligned_cols=236  Identities=9%  Similarity=0.027  Sum_probs=154.5

Q ss_pred             cCCCCCcceEEEEECCCCCEEEEecC-CCcEEEEeCCccccccccCC----ccccccCCCCceeecCCC-CCCCCccc--
Q 021657            4 LTGHQDNAEFALAMCPTEPYVLSGGK-DKSVVLWSIQDHITSSATDP----ATAKSAGSSGSIIKQSPK-PGDGNDKA--   75 (309)
Q Consensus         4 l~~H~~~~V~~~~~~~~~~~l~t~~~-dg~i~vwd~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~-~~~~~~~~--   75 (309)
                      ++.+...+|++++|+|||++||+++. ||+++||+++++........    ......... ........ .......+  
T Consensus        16 ~~~~~~~~~~~~~~~~DG~~la~~s~~~g~~~lw~~~~g~~~~lt~~~~~~~~~~~~spd-~~l~~~~~~~g~~~~~l~~   94 (582)
T 3o4h_A           16 VERLIAVEKYSLQGVVDGDKLLVVGFSEGSVNAYLYDGGETVKLNREPINSVLDPHYGVG-RVILVRDVSKGAEQHALFK   94 (582)
T ss_dssp             HHHHHHSCEEEEEEEETTTEEEEEEEETTEEEEEEEETTEEEECCSSCCSEECEECTTCS-EEEEEEECSTTSCCEEEEE
T ss_pred             HHHHhccchheeecCCCCCeEEEEEccCCceeEEEEcCCCcEeeecccccccccccCCCC-eEEEEeccCCCCcceEEEE
Confidence            33343447999999999999998887 99999999866533222211    111122222 22222221 12222333  


Q ss_pred             CCCC-CcCcccccccccCCeEEEEEecCCCcEEEEEcCCCeEEEEEcCCCCcceEEEeeccCCceeEEEeccCCCCeEEE
Q 021657           76 ADGP-SVGPRGIYNGHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILT  154 (309)
Q Consensus        76 ~~~~-~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~  154 (309)
                      ++.. ..... .+.... .+...+|+|+++..+++.+.++.+.+||+.+++  ..... .+..  .+++|+| +|+++++
T Consensus        95 ~~~~~~g~~~-~l~~~~-~~~~~~~s~dg~~~~~~s~~~~~~~l~d~~~g~--~~~l~-~~~~--~~~~~sp-DG~~la~  166 (582)
T 3o4h_A           95 VNTSRPGEEQ-RLEAVK-PMRILSGVDTGEAVVFTGATEDRVALYALDGGG--LRELA-RLPG--FGFVSDI-RGDLIAG  166 (582)
T ss_dssp             EETTSTTCCE-ECTTSC-SBEEEEEEECSSCEEEEEECSSCEEEEEEETTE--EEEEE-EESS--CEEEEEE-ETTEEEE
T ss_pred             EeccCCCccc-cccCCC-CceeeeeCCCCCeEEEEecCCCCceEEEccCCc--EEEee-cCCC--ceEEECC-CCCEEEE
Confidence            3330 11111 222222 244668888885555554555556699998776  33333 2333  8999999 9999998


Q ss_pred             EcCC----CcEEEEecCCCCCCCCCCceeeeccCCCCeeEEEEecCCCcEEEEecCCC--cEEEEeCCcccccccCCCCC
Q 021657          155 GSAD----NSVRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAEDG--LLNIWDYEKVGKKVEQGPRT  228 (309)
Q Consensus       155 ~~~d----g~i~i~d~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~dg--~i~iwd~~~~~~~~~~~~~~  228 (309)
                      ++.+    +.|++||+.+      ++. ..+..+...+..++|+|||+.| +++..++  .|++||+..           
T Consensus       167 ~~~~~~~~~~i~~~d~~~------g~~-~~l~~~~~~~~~~~~SpDG~~l-~~~~~~~~~~i~~~d~~~-----------  227 (582)
T 3o4h_A          167 LGFFGGGRVSLFTSNLSS------GGL-RVFDSGEGSFSSASISPGMKVT-AGLETAREARLVTVDPRD-----------  227 (582)
T ss_dssp             EEEEETTEEEEEEEETTT------CCC-EEECCSSCEEEEEEECTTSCEE-EEEECSSCEEEEEECTTT-----------
T ss_pred             EEEcCCCCeEEEEEcCCC------CCc-eEeecCCCccccceECCCCCEE-EEccCCCeeEEEEEcCCC-----------
Confidence            8777    7899999987      554 4667788889999999999975 5777888  899999986           


Q ss_pred             cCCCCceeeeecCCCcceeeEE--------EccCCCeEEEEecCCCCCCCCCCeEEEEEc
Q 021657          229 TNYPAGLFFQHAGHRDKVVDFH--------WNASDPWTVVSVSDDCDSTGGGGTLQIWRM  280 (309)
Q Consensus       229 ~~~~~~~~~~~~~~~~~v~~~~--------~~~~~~~~~~s~s~d~~s~~~dg~v~vw~~  280 (309)
                          .... .+.+|...+..++        |+|++ .++++++.|       +.+++|++
T Consensus       228 ----~~~~-~~~~~~~~~~~~~~~~~~~~~~spdg-~~~~~~~~~-------g~~~l~~~  274 (582)
T 3o4h_A          228 ----GSVE-DLELPSKDFSSYRPTAITWLGYLPDG-RLAVVARRE-------GRSAVFID  274 (582)
T ss_dssp             ----CCEE-ECCCSCSHHHHHCCSEEEEEEECTTS-CEEEEEEET-------TEEEEEET
T ss_pred             ----CcEE-EccCCCcChhhhhhccccceeEcCCC-cEEEEEEcC-------CcEEEEEE
Confidence                1222 4456666677777        99999 778777666       99999998

>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24

Probab=99.89  E-value=6.4e-23  Score=180.43  Aligned_cols=207  Identities=12%  Similarity=0.160  Sum_probs=140.2

Q ss_pred             ceEEEEECCCCCEEEEecCCCcEEEEeCCccccccccCCccccccCCCCceeecCCCCCCCCcccCCCCCcCcccccccc
Q 021657           11 AEFALAMCPTEPYVLSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGH   90 (309)
Q Consensus        11 ~V~~~~~~~~~~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   90 (309)
                      .+.+++|+|||+++++ +.||+|++||+.++..                                        ...+..|
T Consensus        18 ~~~~~~~spdg~~~~~-~~dg~i~~~d~~~g~~----------------------------------------~~~~~~~   56 (723)
T 1xfd_A           18 HDPEAKWISDTEFIYR-EQKGTVRLWNVETNTS----------------------------------------TVLIEGK   56 (723)
T ss_dssp             CCCCCCBSSSSCBCCC-CSSSCEEEBCGGGCCC----------------------------------------EEEECTT
T ss_pred             cccccEEcCCCcEEEE-eCCCCEEEEECCCCcE----------------------------------------EEEeccc
Confidence            4578999999997766 7899999999985422                                        2223333


Q ss_pred             cC---CeEEEEEecCCCcEEEEEcCC---------CeEEEEEcCCCCcceEEEeeccCCceeEEEeccCCCCeEEEEcCC
Q 021657           91 ED---TVEDVTFCPSSAQEFCSVGDD---------SCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSAD  158 (309)
Q Consensus        91 ~~---~v~~~~~~~~~~~~l~s~~~d---------g~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d  158 (309)
                      ..   .|.+++|+|+| ++|++++.+         +.|.+||+.+++.........|...+..++|+| +++.|+.++. 
T Consensus        57 ~~~~~~v~~~~~SpDg-~~l~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~~~~~~~~~~~SP-dG~~la~~~~-  133 (723)
T 1xfd_A           57 KIESLRAIRYEISPDR-EYALFSYNVEPIYQHSYTGYYVLSKIPHGDPQSLDPPEVSNAKLQYAGWGP-KGQQLIFIFE-  133 (723)
T ss_dssp             TTTTTTCSEEEECTTS-SEEEEEESCCCCSSSCCCSEEEEEESSSCCCEECCCTTCCSCCCSBCCBCS-STTCEEEEET-
T ss_pred             cccccccceEEECCCC-CEEEEEecCccceeecceeeEEEEECCCCceEeccCCccccccccccEECC-CCCEEEEEEC-
Confidence            33   48999999999 777777664         788999998887321222223445589999999 9999998875 


Q ss_pred             CcEEEEecCCCCCCCCCCceeeeccCCCC------------------eeEEEEecCCCcEEEEecCCC------------
Q 021657          159 NSVRMFDRRNLTSNGVGSPINKFEGHSAA------------------VLCVQWSPDKSSVFGSSAEDG------------  208 (309)
Q Consensus       159 g~i~i~d~~~~~~~~~~~~~~~~~~~~~~------------------v~~~~~~~~~~~l~~~~~~dg------------  208 (309)
                      +.|++||+.+      ++.......+...                  +.+++|+|||++|+ .++.|+            
T Consensus       134 ~~i~~~~~~~------g~~~~~~~~~~~~~~~~g~~~~v~~ee~~~~~~~~~~SpDg~~la-~~~~~~~~~~~~~~~~~~  206 (723)
T 1xfd_A          134 NNIYYCAHVG------KQAIRVVSTGKEGVIYNGLSDWLYEEEILKTHIAHWWSPDGTRLA-YAAINDSRVPIMELPTYT  206 (723)
T ss_dssp             TEEEEESSSS------SCCEEEECCCBTTTEEEEECCHHHHHTTSSSSEEEEECTTSSEEE-EEEEECTTSCEEEECCCS
T ss_pred             CeEEEEECCC------CceEEEecCCCCCceECcccceeEEEEeccCcceEEECCCCCEEE-EEEECCCccceEEeeccC
Confidence            7999999987      5555544433332                  37899999999754 554332            


Q ss_pred             ----------------------cEEEEeCCcccccccCCCCCcCCCCceeeeecCCCcceeeEEEccCCCeEEEEecCCC
Q 021657          209 ----------------------LLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKVVDFHWNASDPWTVVSVSDDC  266 (309)
Q Consensus       209 ----------------------~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~s~d~  266 (309)
                                            .|++||+..........         .-.....+...+..++|+|++..++....   
T Consensus       207 ~~~~~~~~~~~~~~~G~~~~~~~l~~~d~~~~~~~~~l~---------~~~~~~~~~~~~~~~~~SpDg~~l~~~~~---  274 (723)
T 1xfd_A          207 GSIYPTVKPYHYPKAGSENPSISLHVIGLNGPTHDLEMM---------PPDDPRMREYYITMVKWATSTKVAVTWLN---  274 (723)
T ss_dssp             SSSSCCCEEEECCBTTSCCCEEEEEEEESSSSCCCEECC---------CCCCGGGSSEEEEEEEESSSSEEEEEEEE---
T ss_pred             CcCCCcceeccCCCCCCCCCeeEEEEEECCCCceeEEee---------CCccCCCccceeEEEEEeCCCeEEEEEEc---
Confidence                                  67788876522111000         00011224678899999999876544332   


Q ss_pred             CCCCCCCeEEEEEcc
Q 021657          267 DSTGGGGTLQIWRMS  281 (309)
Q Consensus       267 ~s~~~dg~v~vw~~~  281 (309)
                       .+..+..|++||+.
T Consensus       275 -~~~~~~~i~~~d~~  288 (723)
T 1xfd_A          275 -RAQNVSILTLCDAT  288 (723)
T ss_dssp             -TTSCEEEEEEEETT
T ss_pred             -CCCCeEEEEEEeCC
Confidence             23455789999998

>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A

Probab=99.89  E-value=5.9e-21  Score=154.26  Aligned_cols=265  Identities=11%  Similarity=0.047  Sum_probs=164.7

Q ss_pred             ceEEEEECCCCCEEEEecCC----CcEEEEeCCcc--ccc--ccc--CCccc--cccCCCCceeecCCCCCCCCcccCCC
Q 021657           11 AEFALAMCPTEPYVLSGGKD----KSVVLWSIQDH--ITS--SAT--DPATA--KSAGSSGSIIKQSPKPGDGNDKAADG   78 (309)
Q Consensus        11 ~V~~~~~~~~~~~l~t~~~d----g~i~vwd~~~~--~~~--~~~--~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~   78 (309)
                      .+..++|+|+|++|++++.+    +.|.+|++...  ...  ...  .....  ...  ...... .....++.+.+|+.
T Consensus        51 ~p~~l~~spdg~~l~~~~~~~~~~~~v~~~~~~~~~g~~~~~~~~~~~~~~p~~~~~--dg~~l~-~~~~~~~~v~~~~~  127 (361)
T 3scy_A           51 NPSYLIPSADGKFVYSVNEFSKDQAAVSAFAFDKEKGTLHLLNTQKTMGADPCYLTT--NGKNIV-TANYSGGSITVFPI  127 (361)
T ss_dssp             CCCSEEECTTSSEEEEEECCSSTTCEEEEEEEETTTTEEEEEEEEECSSSCEEEEEE--CSSEEE-EEETTTTEEEEEEB
T ss_pred             CCceEEECCCCCEEEEEEccCCCCCcEEEEEEeCCCCcEEEeeEeccCCCCcEEEEE--CCCEEE-EEECCCCEEEEEEe
Confidence            45678999999999988876    89999998752  111  000  00000  111  111111 12223456666665


Q ss_pred             CCcCccccc--------------ccccCCeEEEEEecCCCcEEEEEcCCCeEEEEEcCCCCc----c-e------EEEee
Q 021657           79 PSVGPRGIY--------------NGHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTS----P-V------IKVEK  133 (309)
Q Consensus        79 ~~~~~~~~~--------------~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~----~-~------~~~~~  133 (309)
                      .....+..+              ..+...+.+++|+|+|..+++++..++.|.+|++.....    . .      .....
T Consensus       128 ~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~v~v~~~~~~~~~~~~~~l~~~~~~~~~~~  207 (361)
T 3scy_A          128 GQDGALLPASDVIEFKGSGPDKERQTMPHLHCVRITPDGKYLLADDLGTDQIHKFNINPNANADNKEKFLTKGTPEAFKV  207 (361)
T ss_dssp             CTTSCBCSCSEEEECCCCCSCTTTCSSCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTCCTTTCCCCEEEEEEEEEEC
T ss_pred             CCCCcCcccceeEEccCCCCCccccCCCcceEEEECCCCCEEEEEeCCCCEEEEEEEcCCCCcccccceeecccccceec
Confidence            543322211              112334688999999955666666789999999875542    1 1      12223


Q ss_pred             ccCCceeEEEeccCCCCeEEEEc-CCCcEEEEecCCCCCCCCCCc--eeeec---cCCCCeeEEEEecCCCcEEEEecC-
Q 021657          134 AHDADLHCVDWNPLDDNLILTGS-ADNSVRMFDRRNLTSNGVGSP--INKFE---GHSAAVLCVQWSPDKSSVFGSSAE-  206 (309)
Q Consensus       134 ~~~~~v~~~~~~~~~~~~l~~~~-~dg~i~i~d~~~~~~~~~~~~--~~~~~---~~~~~v~~~~~~~~~~~l~~~~~~-  206 (309)
                      .....+..++|+| +++++++++ .++.|.+||+.+      +..  +..+.   .+......++|+|||++|+++... 
T Consensus       208 ~~~~~~~~~~~sp-dg~~l~v~~~~~~~v~v~~~~~------g~~~~~~~~~~~~~~~~~~~~i~~spdg~~l~v~~~~~  280 (361)
T 3scy_A          208 APGSGPRHLIFNS-DGKFAYLINEIGGTVIAFRYAD------GMLDEIQTVAADTVNAQGSGDIHLSPDGKYLYASNRLK  280 (361)
T ss_dssp             CTTCCEEEEEECT-TSSEEEEEETTTCEEEEEEEET------TEEEEEEEEESCSSCCCCEEEEEECTTSSEEEEEECSS
T ss_pred             CCCCCCeEEEEcC-CCCEEEEEcCCCCeEEEEEecC------CceEEeEEEecCCCCCCCcccEEECCCCCEEEEECCCC
Confidence            3455678999999 898776666 689999999986      432  33332   233456899999999987766666 


Q ss_pred             CCcEEEEeCCcccccccCCCCCcCCCCceeeeecCCCcceeeEEEccCCCeEEEEecCCCCCCCCCCeEEEEEccccccC
Q 021657          207 DGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKVVDFHWNASDPWTVVSVSDDCDSTGGGGTLQIWRMSDLIYR  286 (309)
Q Consensus       207 dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~s~d~~s~~~dg~v~vw~~~~~~~~  286 (309)
                      ++.|.+|++......           ...+..... ...+..++|+|++.+++++...+       +.|.+|++...   
T Consensus       281 ~~~i~v~~~~~~~g~-----------~~~~~~~~~-g~~~~~~~~spdg~~l~~~~~~~-------~~v~v~~~d~~---  338 (361)
T 3scy_A          281 ADGVAIFKVDETNGT-----------LTKVGYQLT-GIHPRNFIITPNGKYLLVACRDT-------NVIQIFERDQA---  338 (361)
T ss_dssp             SCEEEEEEECTTTCC-----------EEEEEEEEC-SSCCCEEEECTTSCEEEEEETTT-------TEEEEEEECTT---
T ss_pred             CCEEEEEEEcCCCCc-----------EEEeeEecC-CCCCceEEECCCCCEEEEEECCC-------CCEEEEEEECC---
Confidence            689999999731111           112333333 45678999999999888766555       89999877621   


Q ss_pred             ChhhHhHhh-hcccceEEEeeeC
Q 021657          287 PQDEVLAEL-EKFKAHVISCTSK  308 (309)
Q Consensus       287 ~~~~~~~~~-~~h~~~v~~~~~~  308 (309)
                       +++..... ..+...+.|+.|.
T Consensus       339 -~g~~~~~~~~~~~~~p~~v~~~  360 (361)
T 3scy_A          339 -TGLLTDIKKDIKVDKPVCLKFV  360 (361)
T ss_dssp             -TCCEEECSCCEECSSEEEEEEE
T ss_pred             -CCcEeecceeeeCCCCeEEEEc
Confidence             23332222 2244578888885

>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*

Probab=99.89  E-value=2.9e-21  Score=163.41  Aligned_cols=203  Identities=11%  Similarity=0.146  Sum_probs=155.4

Q ss_pred             EECCCCCEEEEecCCCcEEEEeCCccccccccCCccccccCCCCceeecCCCCCCCCcccCCCCCcCcccccccccCCeE
Q 021657           16 AMCPTEPYVLSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVE   95 (309)
Q Consensus        16 ~~~~~~~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~   95 (309)
                      +|+|++.++++++.|++|.+||..++                                        +.+..+..+.. +.
T Consensus       144 ~~~p~~~~~vs~~~d~~V~v~D~~t~----------------------------------------~~~~~i~~g~~-~~  182 (543)
T 1nir_A          144 DLDLPNLFSVTLRDAGQIALVDGDSK----------------------------------------KIVKVIDTGYA-VH  182 (543)
T ss_dssp             CCCGGGEEEEEEGGGTEEEEEETTTC----------------------------------------CEEEEEECSTT-EE
T ss_pred             ccCCCCEEEEEEcCCCeEEEEECCCc----------------------------------------eEEEEEecCcc-cc
Confidence            48899999999999999999998743                                        33344442222 88


Q ss_pred             EEEEecCCCcEEEEEcCCCeEEEEEc--CCCCcceEEEeeccCCceeEEEeccC---CCCeEEEEc-CCCcEEEEecCCC
Q 021657           96 DVTFCPSSAQEFCSVGDDSCLILWDA--RVGTSPVIKVEKAHDADLHCVDWNPL---DDNLILTGS-ADNSVRMFDRRNL  169 (309)
Q Consensus        96 ~~~~~~~~~~~l~s~~~dg~i~iwd~--~~~~~~~~~~~~~~~~~v~~~~~~~~---~~~~l~~~~-~dg~i~i~d~~~~  169 (309)
                      .++|+|++ ++|++++.|+.|.+||+  .+++  ....+. +...+..++|+|.   +++++++++ .+++|.+||..+ 
T Consensus       183 ~v~~spdg-~~l~v~~~d~~V~v~D~~~~t~~--~~~~i~-~g~~p~~va~sp~~~~dg~~l~v~~~~~~~v~v~D~~t-  257 (543)
T 1nir_A          183 ISRMSASG-RYLLVIGRDARIDMIDLWAKEPT--KVAEIK-IGIEARSVESSKFKGYEDRYTIAGAYWPPQFAIMDGET-  257 (543)
T ss_dssp             EEEECTTS-CEEEEEETTSEEEEEETTSSSCE--EEEEEE-CCSEEEEEEECCSTTCTTTEEEEEEEESSEEEEEETTT-
T ss_pred             eEEECCCC-CEEEEECCCCeEEEEECcCCCCc--EEEEEe-cCCCcceEEeCCCcCCCCCEEEEEEccCCeEEEEeccc-
Confidence            99999999 78899999999999999  6655  555555 4556899999982   467777776 589999999998 


Q ss_pred             CCCCCCCceeeeccC-----------CCCeeEEEEecCCCcEEEEecCCCcEEEEeCCcccccccCCCCCcCCCCceeee
Q 021657          170 TSNGVGSPINKFEGH-----------SAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQ  238 (309)
Q Consensus       170 ~~~~~~~~~~~~~~~-----------~~~v~~~~~~~~~~~l~~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~  238 (309)
                           ++++..+..+           ...+..+.++|++..++++...++.|.+||+......             .+..
T Consensus       258 -----~~~~~~i~~~g~~~~~~~~~~~~~v~~i~~s~~~~~~~vs~~~~g~i~vvd~~~~~~l-------------~~~~  319 (543)
T 1nir_A          258 -----LEPKQIVSTRGMTVDTQTYHPEPRVAAIIASHEHPEFIVNVKETGKVLLVNYKDIDNL-------------TVTS  319 (543)
T ss_dssp             -----CCEEEEEECCEECSSSCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEECTTSSSC-------------EEEE
T ss_pred             -----cccceeecccCcccCccccccCCceEEEEECCCCCEEEEEECCCCeEEEEEecCCCcc-------------eeEE
Confidence                 7888777542           2368899999999888889999999999999862211             1112


Q ss_pred             ecCCCcceeeEEEccCCCeEEEEecCCCCCCCCCCeEEEEEccccccCChhhHhHhhh
Q 021657          239 HAGHRDKVVDFHWNASDPWTVVSVSDDCDSTGGGGTLQIWRMSDLIYRPQDEVLAELE  296 (309)
Q Consensus       239 ~~~~~~~v~~~~~~~~~~~~~~s~s~d~~s~~~dg~v~vw~~~~~~~~~~~~~~~~~~  296 (309)
                      . .+...+.++.|+|++.++++++..+       ++|.+||+.      +++++..+.
T Consensus       320 i-~~~~~~~~~~~spdg~~l~va~~~~-------~~v~v~D~~------tg~l~~~i~  363 (543)
T 1nir_A          320 I-GAAPFLHDGGWDSSHRYFMTAANNS-------NKVAVIDSK------DRRLSALVD  363 (543)
T ss_dssp             E-ECCSSCCCEEECTTSCEEEEEEGGG-------TEEEEEETT------TTEEEEEEE
T ss_pred             e-ccCcCccCceECCCCCEEEEEecCC-------CeEEEEECC------CCeEEEeec
Confidence            2 3556788999999999988877665       899999998      555555544

>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}

Probab=99.89  E-value=1.4e-20  Score=151.26  Aligned_cols=222  Identities=13%  Similarity=0.157  Sum_probs=148.0

Q ss_pred             CCCCcceEEEEECCCCCEEEEec-CCCcEEEEeCCccccccccCCccccccCCCCceeecCCCCCCCCcccCCCCCcCcc
Q 021657            6 GHQDNAEFALAMCPTEPYVLSGG-KDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPR   84 (309)
Q Consensus         6 ~H~~~~V~~~~~~~~~~~l~t~~-~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   84 (309)
                      .|.. .+..++|+|+|++|++++ .++.|++|++...-.......              ...            ....+.
T Consensus        83 ~~~~-~p~~~a~spdg~~l~~~~~~~~~v~v~~~~~~g~~~~~~~--------------~~~------------~~~~p~  135 (347)
T 3hfq_A           83 APGT-PPAYVAVDEARQLVYSANYHKGTAEVMKIAADGALTLTDT--------------VQH------------SGHGPR  135 (347)
T ss_dssp             EESC-CCSEEEEETTTTEEEEEETTTTEEEEEEECTTSCEEEEEE--------------EEC------------CCCCSS
T ss_pred             cCCC-CCEEEEECCCCCEEEEEeCCCCEEEEEEeCCCCCeeecce--------------eec------------CCCCCC
Confidence            3455 567999999999888777 789999999863100000000              000            000000


Q ss_pred             cccccccCCeEEEEEecCCCcEEEEEcCCCeEEEEEcC-CCCcceEEEeec-cCCceeEEEeccCCCCeEEE-EcCCCcE
Q 021657           85 GIYNGHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDAR-VGTSPVIKVEKA-HDADLHCVDWNPLDDNLILT-GSADNSV  161 (309)
Q Consensus        85 ~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~-~~~~~~~~~~~~-~~~~v~~~~~~~~~~~~l~~-~~~dg~i  161 (309)
                        ...+...+.+++|+|++. ++++...++.|.+|++. .++......... ....+..++|+| +++++++ ...++.|
T Consensus       136 --~~~~~~~~~~~~~spdg~-l~v~~~~~~~v~~~~~~~~g~~~~~~~~~~~~g~~p~~~~~sp-dg~~l~v~~~~~~~v  211 (347)
T 3hfq_A          136 --PEQDGSHIHYTDLTPDNR-LAVIDLGSDKVYVYNVSDAGQLSEQSVLTMEAGFGPRHLVFSP-DGQYAFLAGELSSQI  211 (347)
T ss_dssp             --TTCSSCCEEEEEECTTSC-EEEEETTTTEEEEEEECTTSCEEEEEEEECCTTCCEEEEEECT-TSSEEEEEETTTTEE
T ss_pred             --ccccCCCceEEEECCCCc-EEEEeCCCCEEEEEEECCCCcEEEeeeEEcCCCCCCceEEECC-CCCEEEEEeCCCCEE
Confidence              112344688999999995 78888889999999998 444212222222 233678899999 8885554 5678999


Q ss_pred             EEEecCCCCCCCCCC--ceeeeccCC------CCeeEEEEecCCCcEEEEecCCCcEEEEeCCcccccccCCCCCcCCCC
Q 021657          162 RMFDRRNLTSNGVGS--PINKFEGHS------AAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPA  233 (309)
Q Consensus       162 ~i~d~~~~~~~~~~~--~~~~~~~~~------~~v~~~~~~~~~~~l~~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~  233 (309)
                      .+|++....    ++  .+..+....      ..+..++|+|+|++++++...++.|.+|++...+.            .
T Consensus       212 ~v~~~~~~~----g~~~~~~~~~~~~~~~~~~~~~~~i~~spdG~~l~v~~~~~~~v~v~~~~~~g~------------~  275 (347)
T 3hfq_A          212 ASLKYDTQT----GAFTQLGIVKTIPADYTAHNGAAAIRLSHDGHFLYVSNRGYNTLAVFAVTADGH------------L  275 (347)
T ss_dssp             EEEEEETTT----TEEEEEEEEESSCTTCCSCCEEEEEEECTTSCEEEEEEETTTEEEEEEECGGGC------------E
T ss_pred             EEEEecCCC----CceEEeeeeeecCCCCCCCCcceeEEECCCCCEEEEEeCCCCEEEEEEECCCCc------------E
Confidence            999987421    22  223333222      34888999999998877888899999999975221            2


Q ss_pred             ceeeeecCCCcceeeEEEccCCCeEEEEecCCCCCCCCCCeEEEEEcc
Q 021657          234 GLFFQHAGHRDKVVDFHWNASDPWTVVSVSDDCDSTGGGGTLQIWRMS  281 (309)
Q Consensus       234 ~~~~~~~~~~~~v~~~~~~~~~~~~~~s~s~d~~s~~~dg~v~vw~~~  281 (309)
                      ..+..+..+...+..++|+|++.+++++...+       +.|.+|+++
T Consensus       276 ~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~-------~~v~v~~~d  316 (347)
T 3hfq_A          276 TLIQQISTEGDFPRDFDLDPTEAFVVVVNQNT-------DNATLYARD  316 (347)
T ss_dssp             EEEEEEECSSSCCCEEEECTTSSEEEEEETTT-------TEEEEEEEC
T ss_pred             EEeEEEecCCCCcCeEEECCCCCEEEEEEcCC-------CcEEEEEEe
Confidence            23445555666789999999999888766554       899999775

>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*

Probab=99.88  E-value=2.2e-21  Score=170.27  Aligned_cols=258  Identities=12%  Similarity=0.165  Sum_probs=169.4

Q ss_pred             ceEEEEECCCCCEEEEecCCCcEEEEeCCccccccccC---CccccccCCCCceeecCCCCCCCCcccCCCCC-----cC
Q 021657           11 AEFALAMCPTEPYVLSGGKDKSVVLWSIQDHITSSATD---PATAKSAGSSGSIIKQSPKPGDGNDKAADGPS-----VG   82 (309)
Q Consensus        11 ~V~~~~~~~~~~~l~t~~~dg~i~vwd~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~   82 (309)
                      .|.+++|+|| ++++.+ .|+.|++||+.++.......   ...............+.   .++.+.+|+..+     .+
T Consensus        83 ~v~~~~~spd-~~~~~~-~~~~i~~~d~~~~~~~~l~~~~~~~~~~~~SpdG~~la~~---~~~~i~v~~~~~~~~~~g~  157 (706)
T 2z3z_A           83 PSFRTLDAGR-GLVVLF-TQGGLVGFDMLARKVTYLFDTNEETASLDFSPVGDRVAYV---RNHNLYIARGGKLGEGMSR  157 (706)
T ss_dssp             CCEEEEETTT-TEEEEE-ETTEEEEEETTTTEEEEEECCTTCCTTCEECTTSSEEEEE---ETTEEEEEECBCTTSCCCC
T ss_pred             CceeEEECCC-CeEEEE-ECCEEEEEECCCCceEEccCCcccccCCcCCCCCCEEEEE---ECCeEEEEecCcccccCCC
Confidence            5899999999 665555 35999999998764322111   11112222222222222   346788888877     66


Q ss_pred             cccccccccCC--------------eEEEEEecCCCcEEEEEc---------------------------------CCCe
Q 021657           83 PRGIYNGHEDT--------------VEDVTFCPSSAQEFCSVG---------------------------------DDSC  115 (309)
Q Consensus        83 ~~~~~~~~~~~--------------v~~~~~~~~~~~~l~s~~---------------------------------~dg~  115 (309)
                      .......+...              +.++.|+|+| +.|++++                                 .+..
T Consensus       158 ~~~~~~~~~~~~~~g~~~~~ee~~~~~~~~~SpDg-~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~~  236 (706)
T 2z3z_A          158 AIAVTIDGTETLVYGQAVHQREFGIEKGTFWSPKG-SCLAFYRMDQSMVKPTPIVDYHPLEAESKPLYYPMAGTPSHHVT  236 (706)
T ss_dssp             CEESCSCCBTTEEESSCCGGGCTTCCCSEEECTTS-SEEEEEEEECTTSCCEEEEECCSSSCEEEEECCCBTTSCCCEEE
T ss_pred             cEEeccCCCCCeEcccchhhhhcCCCceEEECCCC-CEEEEEEECCCCCceEEeeccCCCCCceEEeeCCCCCCCCCeeE
Confidence            55544444333              4889999999 6777776                                 4578


Q ss_pred             EEEEEcCCCCcceEEEe--eccCCceeEEEeccCCCCeEEEEcCCC-----cEEEEecCCCCCCCCCCceeeec--cCCC
Q 021657          116 LILWDARVGTSPVIKVE--KAHDADLHCVDWNPLDDNLILTGSADN-----SVRMFDRRNLTSNGVGSPINKFE--GHSA  186 (309)
Q Consensus       116 i~iwd~~~~~~~~~~~~--~~~~~~v~~~~~~~~~~~~l~~~~~dg-----~i~i~d~~~~~~~~~~~~~~~~~--~~~~  186 (309)
                      |.+||+.+++  .....  ..+...+.+++|+| +++.|++++.++     .|++||+.+      ++....+.  .+..
T Consensus       237 l~~~d~~~~~--~~~~~~~~~~~~~~~~~~~sp-dg~~l~~~~~~~~~~~~~v~~~d~~~------g~~~~~~~~~~~~~  307 (706)
T 2z3z_A          237 VGIYHLATGK--TVYLQTGEPKEKFLTNLSWSP-DENILYVAEVNRAQNECKVNAYDAET------GRFVRTLFVETDKH  307 (706)
T ss_dssp             EEEEETTTTE--EEECCCCSCTTCEEEEEEECT-TSSEEEEEEECTTSCEEEEEEEETTT------CCEEEEEEEEECSS
T ss_pred             EEEEECCCCc--eEeeccCCCCceeEeeEEEEC-CCCEEEEEEeCCCCCeeEEEEEECCC------CceeeEEEEccCCC
Confidence            9999998776  22222  24667899999999 999999887775     899999988      53333332  1222


Q ss_pred             ---CeeEEEEec--CCCcEEEEecCCCcEEEEeCCcccccccCCCCCcCCCCceeeeecCCCcceee-EEEccCCCeEEE
Q 021657          187 ---AVLCVQWSP--DKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKVVD-FHWNASDPWTVV  260 (309)
Q Consensus       187 ---~v~~~~~~~--~~~~l~~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~-~~~~~~~~~~~~  260 (309)
                         .+..++|+|  +|++ ++++..|+.++||+++..+              ..+..+..+...+.. ++|+|++..+++
T Consensus       308 ~~~~~~~~~~sp~~dg~~-l~~~~~~g~~~l~~~~~~~--------------~~~~~l~~~~~~v~~~~~~spdg~~l~~  372 (706)
T 2z3z_A          308 YVEPLHPLTFLPGSNNQF-IWQSRRDGWNHLYLYDTTG--------------RLIRQVTKGEWEVTNFAGFDPKGTRLYF  372 (706)
T ss_dssp             CCCCCSCCEECTTCSSEE-EEEECTTSSCEEEEEETTS--------------CEEEECCCSSSCEEEEEEECTTSSEEEE
T ss_pred             eECccCCceeecCCCCEE-EEEEccCCccEEEEEECCC--------------CEEEecCCCCeEEEeeeEEcCCCCEEEE
Confidence               246789999  9984 6688889999999887322              223445566667776 799999998887


Q ss_pred             EecCCCCCCCCCCeEEEEEccccccCChhhHhHhhhcccceEEEeeeCC
Q 021657          261 SVSDDCDSTGGGGTLQIWRMSDLIYRPQDEVLAELEKFKAHVISCTSKP  309 (309)
Q Consensus       261 s~s~d~~s~~~dg~v~vw~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~P  309 (309)
                      +++.+   +.....|..||+.      +++ +..+. |...+.+++|+|
T Consensus       373 ~~~~~---~~~~~~l~~~d~~------~~~-~~~l~-~~~~~~~~~~sp  410 (706)
T 2z3z_A          373 ESTEA---SPLERHFYCIDIK------GGK-TKDLT-PESGMHRTQLSP  410 (706)
T ss_dssp             EESSS---CTTCBEEEEEETT------CCC-CEESC-CSSSEEEEEECT
T ss_pred             EecCC---CCceEEEEEEEcC------CCC-ceecc-CCCceEEEEECC
Confidence            76654   1111266666665      222 23333 566788888887

>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}

Probab=99.88  E-value=2e-21  Score=171.42  Aligned_cols=244  Identities=12%  Similarity=0.054  Sum_probs=162.7

Q ss_pred             cccCCCCCcceEEEEECCCCCEEEEecCCCcEEEEeCCccccccccCCccccccCCCCceeecCCCCCCCCcccCCCCCc
Q 021657            2 EILTGHQDNAEFALAMCPTEPYVLSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSV   81 (309)
Q Consensus         2 ~~l~~H~~~~V~~~~~~~~~~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (309)
                      +.+..|.. .+..++|+|||++|+.++ ++.|++||+.++.........       .....                 .+
T Consensus       145 ~~l~~~~~-~~~~~~~SPDG~~la~~~-~~~i~~~d~~~g~~~~~~~~~-------~~~~~-----------------~g  198 (741)
T 2ecf_A          145 RQLTHGEG-FATDAKLSPKGGFVSFIR-GRNLWVIDLASGRQMQLTADG-------STTIG-----------------NG  198 (741)
T ss_dssp             CBCCCSSS-CEEEEEECTTSSEEEEEE-TTEEEEEETTTTEEEECCCCC-------CSSEE-----------------ES
T ss_pred             EEcccCCc-ccccccCCCCCCEEEEEe-CCcEEEEecCCCCEEEeccCC-------cccee-----------------cc
Confidence            35667777 789999999999999887 569999999864322111100       00000                 00


Q ss_pred             CcccccccccCCeEEEEEecCCCcEEEEEcCCC---------------------------------eEEEEEcCC-CCcc
Q 021657           82 GPRGIYNGHEDTVEDVTFCPSSAQEFCSVGDDS---------------------------------CLILWDARV-GTSP  127 (309)
Q Consensus        82 ~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg---------------------------------~i~iwd~~~-~~~~  127 (309)
                      ............+..+.|+|+| +.|++++.|+                                 .|.+||+.+ ++  
T Consensus       199 ~~~~v~~~~~~~~~~~~~SpDg-~~l~~~~~d~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~~~~l~~~d~~~~~~--  275 (741)
T 2ecf_A          199 IAEFVADEEMDRHTGYWWAPDD-SAIAYARIDESPVPVQKRYEVYADRTDVIEQRYPAAGDANVQVKLGVISPAEQAQ--  275 (741)
T ss_dssp             CCCHHHHHHSCCCCSEEECTTS-SCEEEEEEECTTSCEEEEEEECSSCEEEEEEECCBTTSCCCEEEEEEECSSTTCC--
T ss_pred             ccceeeeeccccccceEECCCC-CEEEEEEEcCCCCceEecCCCCCCcccceEeecCCCCCCCCeeEEEEEECCCCCc--
Confidence            0000001112346789999999 6677776655                                 789999987 76  


Q ss_pred             eEEEee--ccCCceeEEEeccCCCCeEEEEcC-----CCcEEEEecCCCCCCCCCCceeeeccCCC----CeeEEEEecC
Q 021657          128 VIKVEK--AHDADLHCVDWNPLDDNLILTGSA-----DNSVRMFDRRNLTSNGVGSPINKFEGHSA----AVLCVQWSPD  196 (309)
Q Consensus       128 ~~~~~~--~~~~~v~~~~~~~~~~~~l~~~~~-----dg~i~i~d~~~~~~~~~~~~~~~~~~~~~----~v~~~~~~~~  196 (309)
                      ......  .|...+..++| | +++.|++++.     +..|++||+.+      ++....+..+..    .+..++|+||
T Consensus       276 ~~~~~~~~~~~~~~~~~~~-p-Dg~~l~~~~~~~~~~~~~i~~~d~~~------g~~~~~~~~~~~~~~~~~~~~~~spd  347 (741)
T 2ecf_A          276 TQWIDLGKEQDIYLARVNW-R-DPQHLSFQRQSRDQKKLDLVEVTLAS------NQQRVLAHETSPTWVPLHNSLRFLDD  347 (741)
T ss_dssp             CEEECCCSCSSEEEEEEEE-E-ETTEEEEEEEETTSSEEEEEEEETTT------CCEEEEEEEECSSCCCCCSCCEECTT
T ss_pred             eEEecCCCCcceEEEEEEe-C-CCCEEEEEEecccCCeEEEEEEECCC------CceEEEEEcCCCCcCCcCCceEECCC
Confidence            233222  46778999999 9 9998887654     56899999998      666655554432    4568999999


Q ss_pred             CCcEEEEecCCCcEEEEeCCcccccccCCCCCcCCCCceeeeecCCCcceeeE-EEccCCCeEEEEecCCCCCCCCCCeE
Q 021657          197 KSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKVVDF-HWNASDPWTVVSVSDDCDSTGGGGTL  275 (309)
Q Consensus       197 ~~~l~~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~-~~~~~~~~~~~s~s~d~~s~~~dg~v  275 (309)
                      |+ ++++++.||.++||.++..+              . ...+..|...+..+ .|+|++..++++++.|     ....+
T Consensus       348 g~-~~~~~~~~g~~~l~~~~~~~--------------~-~~~l~~~~~~v~~~~~~s~dg~~l~~~~~~~-----~~~~~  406 (741)
T 2ecf_A          348 GS-ILWSSERTGFQHLYRIDSKG--------------K-AAALTHGNWSVDELLAVDEKAGLAYFRAGIE-----SARES  406 (741)
T ss_dssp             SC-EEEEECTTSSCEEEEECSSS--------------C-EEESCCSSSCEEEEEEEETTTTEEEEEECSS-----CTTCB
T ss_pred             Ce-EEEEecCCCccEEEEEcCCC--------------C-eeeeeecceEEEeEeEEeCCCCEEEEEEeCC-----CCceE
Confidence            99 67788889988888876421              1 33455667778887 5999999888766654     11289


Q ss_pred             EEEEccccccCChhhHhHhhhcccceEEEeeeCC
Q 021657          276 QIWRMSDLIYRPQDEVLAELEKFKAHVISCTSKP  309 (309)
Q Consensus       276 ~vw~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~P  309 (309)
                      +||++..     .+..+..+.. ...+..++|+|
T Consensus       407 ~l~~~~~-----~g~~~~~l~~-~~~~~~~~~sp  434 (741)
T 2ecf_A          407 QIYAVPL-----QGGQPQRLSK-APGMHSASFAR  434 (741)
T ss_dssp             EEEEEET-----TCCCCEECCC-SCSEEEEEECT
T ss_pred             EEEEEEc-----CCCCeeeccc-CCCceEEEECC
Confidence            9999872     2333444544 55677888876

>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24

Probab=99.88  E-value=4.2e-21  Score=168.90  Aligned_cols=273  Identities=12%  Similarity=0.047  Sum_probs=167.0

Q ss_pred             ccCCCCCc--ceEEEEECCCCCEEEEecCC---------CcEEEEeCCcccccc-ccCC-----ccccccCCCCceeecC
Q 021657            3 ILTGHQDN--AEFALAMCPTEPYVLSGGKD---------KSVVLWSIQDHITSS-ATDP-----ATAKSAGSSGSIIKQS   65 (309)
Q Consensus         3 ~l~~H~~~--~V~~~~~~~~~~~l~t~~~d---------g~i~vwd~~~~~~~~-~~~~-----~~~~~~~~~~~~~~~~   65 (309)
                      .+.+|...  .|.+++|||||++|++++.+         +.|.+||++++.... ....     ......+..+....+.
T Consensus        52 ~~~~~~~~~~~v~~~~~SpDg~~l~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~~~~~~~~~~~SPdG~~la~~  131 (723)
T 1xfd_A           52 LIEGKKIESLRAIRYEISPDREYALFSYNVEPIYQHSYTGYYVLSKIPHGDPQSLDPPEVSNAKLQYAGWGPKGQQLIFI  131 (723)
T ss_dssp             EECTTTTTTTTCSEEEECTTSSEEEEEESCCCCSSSCCCSEEEEEESSSCCCEECCCTTCCSCCCSBCCBCSSTTCEEEE
T ss_pred             EeccccccccccceEEECCCCCEEEEEecCccceeecceeeEEEEECCCCceEeccCCccccccccccEECCCCCEEEEE
Confidence            34455431  38899999999999998764         788899998875311 1111     1112222222222221


Q ss_pred             CCCCCCCcccCCCCCcCcccccccccCCe------------------EEEEEecCCCcEEEEEcCCC-------------
Q 021657           66 PKPGDGNDKAADGPSVGPRGIYNGHEDTV------------------EDVTFCPSSAQEFCSVGDDS-------------  114 (309)
Q Consensus        66 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v------------------~~~~~~~~~~~~l~s~~~dg-------------  114 (309)
                      .   ...+++|+..+.+.......+...+                  .++.|+|+| +.|++++.|+             
T Consensus       132 ~---~~~i~~~~~~~g~~~~~~~~~~~~~~~~g~~~~v~~ee~~~~~~~~~~SpDg-~~la~~~~~~~~~~~~~~~~~~~  207 (723)
T 1xfd_A          132 F---ENNIYYCAHVGKQAIRVVSTGKEGVIYNGLSDWLYEEEILKTHIAHWWSPDG-TRLAYAAINDSRVPIMELPTYTG  207 (723)
T ss_dssp             E---TTEEEEESSSSSCCEEEECCCBTTTEEEEECCHHHHHTTSSSSEEEEECTTS-SEEEEEEEECTTSCEEEECCCSS
T ss_pred             E---CCeEEEEECCCCceEEEecCCCCCceECcccceeEEEEeccCcceEEECCCC-CEEEEEEECCCccceEEeeccCC
Confidence            1   1578888888777665555444333                  789999999 6677766442             


Q ss_pred             ---------------------eEEEEEcCCCCcceEEEeecc------CCceeEEEeccCCCCeEEEEcC----CCcEEE
Q 021657          115 ---------------------CLILWDARVGTSPVIKVEKAH------DADLHCVDWNPLDDNLILTGSA----DNSVRM  163 (309)
Q Consensus       115 ---------------------~i~iwd~~~~~~~~~~~~~~~------~~~v~~~~~~~~~~~~l~~~~~----dg~i~i  163 (309)
                                           .|++||+.+++  ....+..+      ...+..++|+| +++++++...    +..|++
T Consensus       208 ~~~~~~~~~~~~~~G~~~~~~~l~~~d~~~~~--~~~~l~~~~~~~~~~~~~~~~~~Sp-Dg~~l~~~~~~~~~~~~i~~  284 (723)
T 1xfd_A          208 SIYPTVKPYHYPKAGSENPSISLHVIGLNGPT--HDLEMMPPDDPRMREYYITMVKWAT-STKVAVTWLNRAQNVSILTL  284 (723)
T ss_dssp             SSSCCCEEEECCBTTSCCCEEEEEEEESSSSC--CCEECCCCCCGGGSSEEEEEEEESS-SSEEEEEEEETTSCEEEEEE
T ss_pred             cCCCcceeccCCCCCCCCCeeEEEEEECCCCc--eeEEeeCCccCCCccceeEEEEEeC-CCeEEEEEEcCCCCeEEEEE
Confidence                                 79999998776  22333333      56789999999 8988876643    357999


Q ss_pred             EecCCCCCCCCCCceeeecc-CCCCe----eEEEEecCCCcEEEE-ecCCC------cEEEEeCCcccccccCCCCCcCC
Q 021657          164 FDRRNLTSNGVGSPINKFEG-HSAAV----LCVQWSPDKSSVFGS-SAEDG------LLNIWDYEKVGKKVEQGPRTTNY  231 (309)
Q Consensus       164 ~d~~~~~~~~~~~~~~~~~~-~~~~v----~~~~~~~~~~~l~~~-~~~dg------~i~iwd~~~~~~~~~~~~~~~~~  231 (309)
                      ||+.+      ++....+.. +...+    ..++|+|||+.++.. +..++      .|.+||+...+..          
T Consensus       285 ~d~~~------g~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~l~~~d~~~~~~~----------  348 (723)
T 1xfd_A          285 CDATT------GVCTKKHEDESEAWLHRQNEEPVFSKDGRKFFFIRAIPQGGRGKFYHITVSSSQPNSSN----------  348 (723)
T ss_dssp             EETTT------CCEEEEEEEECSSCCCCCCCCCEECTTSCSEEEEEEECCSSSSCEEEEEEECSSCCSSS----------
T ss_pred             EeCCC------CcceEEEEeccCCEEeccCCCceEcCCCCeEEEEEecccCCCcceeEEEEEeccCCCCc----------
Confidence            99988      665554433 23333    378999999986654 55677      4666663221210          


Q ss_pred             CCceeeeecCCCcceee-EEEccCCCeEEEEecCCCCCCCCCCeEEEEEccccccCChhhHhHhhhc---ccceEEEeee
Q 021657          232 PAGLFFQHAGHRDKVVD-FHWNASDPWTVVSVSDDCDSTGGGGTLQIWRMSDLIYRPQDEVLAELEK---FKAHVISCTS  307 (309)
Q Consensus       232 ~~~~~~~~~~~~~~v~~-~~~~~~~~~~~~s~s~d~~s~~~dg~v~vw~~~~~~~~~~~~~~~~~~~---h~~~v~~~~~  307 (309)
                        .....+..+...+.. ++|+|++..++.++..+     ..+.+++|++...    .......+..   |...+..++|
T Consensus       349 --~~~~~l~~~~~~~~~~~~~spdg~~l~~~~~~~-----~~~~~~l~~~~~~----~~~~~~~l~~~~~~~~~~~~~~~  417 (723)
T 1xfd_A          349 --DNIQSITSGDWDVTKILAYDEKGNKIYFLSTED-----LPRRRQLYSANTV----GNFNRQCLSCDLVENCTYFSASF  417 (723)
T ss_dssp             --CCCCBSCCSSSCEEEEEEEETTTTEEEEEESSS-----CTTCCEEEEECSS----TTCCCBCSSTTSSSSCCCCEEEE
T ss_pred             --cceeEeecCCeEEEeeeEEcCCCCEEEEEEcCC-----CCcceEEEEEeCC----CCCCcceecccccCCCCeEEEEE
Confidence              001122222333444 69999999887654432     1268999998731    1112223332   5666778888


Q ss_pred             CC
Q 021657          308 KP  309 (309)
Q Consensus       308 ~P  309 (309)
                      +|
T Consensus       418 sp  419 (723)
T 1xfd_A          418 SH  419 (723)
T ss_dssp             CT
T ss_pred             CC
Confidence            76

>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1

Probab=99.87  E-value=3.7e-20  Score=148.29  Aligned_cols=209  Identities=11%  Similarity=0.217  Sum_probs=139.3

Q ss_pred             ceEEEEECCCCCEEEEec-CCCcEEEEeCCccccccccCCccccccCCCCceeecCCCCCCCCcccCCCCCcCccccccc
Q 021657           11 AEFALAMCPTEPYVLSGG-KDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNG   89 (309)
Q Consensus        11 ~V~~~~~~~~~~~l~t~~-~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   89 (309)
                      .+..++|+|++++|++++ .++.|++||+..+.                                     ..+....+..
T Consensus        85 ~~~~~~~s~dg~~l~~~~~~~~~i~~~d~~~~~-------------------------------------~~~~~~~~~~  127 (343)
T 1ri6_A           85 SLTHISTDHQGQFVFVGSYNAGNVSVTRLEDGL-------------------------------------PVGVVDVVEG  127 (343)
T ss_dssp             CCSEEEECTTSSEEEEEETTTTEEEEEEEETTE-------------------------------------EEEEEEEECC
T ss_pred             CCcEEEEcCCCCEEEEEecCCCeEEEEECCCCc-------------------------------------cccccccccC
Confidence            467899999999876655 58899999984210                                     0111122222


Q ss_pred             ccCCeEEEEEecCCCcEEEEEcCCCeEEEEEcCC-CCcceEE--Eee-ccCCceeEEEeccCCCCeEE-EEcCCCcEEEE
Q 021657           90 HEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARV-GTSPVIK--VEK-AHDADLHCVDWNPLDDNLIL-TGSADNSVRMF  164 (309)
Q Consensus        90 ~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~-~~~~~~~--~~~-~~~~~v~~~~~~~~~~~~l~-~~~~dg~i~i~  164 (309)
                       ...+.+++|+|++..+++++..++.|.+||+.+ ++.....  ... .....+..++|+| ++++++ ++..++.|.+|
T Consensus       128 -~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p-dg~~l~~~~~~~~~i~~~  205 (343)
T 1ri6_A          128 -LDGCHSANISPDNRTLWVPALKQDRICLFTVSDDGHLVAQDPAEVTTVEGAGPRHMVFHP-NEQYAYCVNELNSSVDVW  205 (343)
T ss_dssp             -CTTBCCCEECTTSSEEEEEEGGGTEEEEEEECTTSCEEEEEEEEEECSTTCCEEEEEECT-TSSEEEEEETTTTEEEEE
T ss_pred             -CCCceEEEECCCCCEEEEecCCCCEEEEEEecCCCceeeecccccccCCCCCcceEEECC-CCCEEEEEeCCCCEEEEE
Confidence             234788999999944444444899999999987 5421111  222 2345788999999 888665 45578999999


Q ss_pred             ecCCCCCCCCCCc--eeeec---cC---CCCeeEEEEecCCCcEEEEecCCCcEEEEeCCcccccccCCCCCcCCCCcee
Q 021657          165 DRRNLTSNGVGSP--INKFE---GH---SAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLF  236 (309)
Q Consensus       165 d~~~~~~~~~~~~--~~~~~---~~---~~~v~~~~~~~~~~~l~~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~  236 (309)
                      |+....    ++.  ...+.   ..   ...+..++|+|+++++++++..++.|.+||+......           ...+
T Consensus       206 ~~~~~~----g~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~l~v~~~~~~~i~v~d~~~~~~~-----------~~~~  270 (343)
T 1ri6_A          206 ELKDPH----GNIECVQTLDMMPENFSDTRWAADIHITPDGRHLYACDRTASLITVFSVSEDGSV-----------LSKE  270 (343)
T ss_dssp             ESSCTT----SCCEEEEEEECSCTTCCSCCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCC-----------EEEE
T ss_pred             EecCCC----CcEEEEeeccccCccccccCCccceEECCCCCEEEEEecCCCEEEEEEEcCCCCc-----------eEEe
Confidence            996421    221  22222   11   2356789999999988778878999999999841111           1223


Q ss_pred             eeecCCCcceeeEEEccCCCeEEEEecCCCCCCCCCCeEEEEEcc
Q 021657          237 FQHAGHRDKVVDFHWNASDPWTVVSVSDDCDSTGGGGTLQIWRMS  281 (309)
Q Consensus       237 ~~~~~~~~~v~~~~~~~~~~~~~~s~s~d~~s~~~dg~v~vw~~~  281 (309)
                      ..+..+.. +..++|+|++.+++++...+       +.|.+|++.
T Consensus       271 ~~~~~~~~-~~~~~~s~dg~~l~~~~~~~-------~~v~v~~~d  307 (343)
T 1ri6_A          271 GFQPTETQ-PRGFNVDHSGKYLIAAGQKS-------HHISVYEIV  307 (343)
T ss_dssp             EEEECSSS-CCCEEECTTSSEEEEECTTT-------CEEEEEEEE
T ss_pred             eeecCCCc-cceEEECCCCCEEEEecCCC-------CeEEEEEEc
Confidence            33344444 88999999999888755444       999999775

>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*

Probab=99.87  E-value=5.3e-21  Score=174.35  Aligned_cols=264  Identities=9%  Similarity=-0.003  Sum_probs=180.6

Q ss_pred             ccCCCCCcceEEEEECCCCCEEEEecCCCcEEEEeCCcc--cc-ccccCC-ccccccCCCCceeecCCCCCCCCcccCCC
Q 021657            3 ILTGHQDNAEFALAMCPTEPYVLSGGKDKSVVLWSIQDH--IT-SSATDP-ATAKSAGSSGSIIKQSPKPGDGNDKAADG   78 (309)
Q Consensus         3 ~l~~H~~~~V~~~~~~~~~~~l~t~~~dg~i~vwd~~~~--~~-~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   78 (309)
                      .+.+|.+ .+.++.|+++ .++++++.|+.++||.+...  .. ...... ..............+.   .++.+.+|+.
T Consensus       198 ~l~~~~~-~v~~~~~s~d-~l~~~~~~dg~~~l~~~~~~g~~~~~l~~~~~~~~~~~SpDG~~la~~---~~~~i~~~d~  272 (1045)
T 1k32_A          198 KIVDMST-HVSSPVIVGH-RIYFITDIDGFGQIYSTDLDGKDLRKHTSFTDYYPRHLNTDGRRILFS---KGGSIYIFNP  272 (1045)
T ss_dssp             EEECCSS-CCEEEEEETT-EEEEEECTTSSCEEEEEETTSCSCEECCCCCSSCEEEEEESSSCEEEE---ETTEEEEECT
T ss_pred             ECcCCCC-cccceEEeCC-EEEEEEeccCceEEEEEeCCCCcceEecCCCCcceeeEcCCCCEEEEE---eCCEEEEecC
Confidence            4567888 8899999988 67778888999999987531  11 111110 0011111111111111   2556777776


Q ss_pred             CCcCccccccc-----------ccCCeEEEEEe-cCCCcEEEEEcCCCeEEEEEcCCCCcceEEEeeccCC-ceeEEEec
Q 021657           79 PSVGPRGIYNG-----------HEDTVEDVTFC-PSSAQEFCSVGDDSCLILWDARVGTSPVIKVEKAHDA-DLHCVDWN  145 (309)
Q Consensus        79 ~~~~~~~~~~~-----------~~~~v~~~~~~-~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~-~v~~~~~~  145 (309)
                      .. ..+..+..           |...+.+++|+ |+| ..|++++ ++.|.+|++..++   ...+..|.. .+..++|+
T Consensus       273 ~~-~~l~~l~~~~~~~~~~~~~~~~~v~~~~~S~pdG-~~la~~~-~~~i~~~~~~~~~---~~~~~~~~~~~~~~~~~s  346 (1045)
T 1k32_A          273 DT-EKIEKIEIGDLESPEDRIISIPSKFAEDFSPLDG-DLIAFVS-RGQAFIQDVSGTY---VLKVPEPLRIRYVRRGGD  346 (1045)
T ss_dssp             TT-CCEEECCCCCCCBCCSEEEECGGGGEEEEEECGG-GCEEEEE-TTEEEEECTTSSB---EEECSCCSCEEEEEECSS
T ss_pred             Cc-eEeeeeccCcccccccccccccccceeeecCCCC-CEEEEEE-cCEEEEEcCCCCc---eEEccCCCcceEEeeeEc
Confidence            32 22223333           44578999999 998 6677776 7899999987665   334556777 89999999


Q ss_pred             cCCCCeEEEEcCCCcEE-EEecCCCCCCCCCCceeeeccCCCCeeEEEEecCCCcEEEEecCCCcEEEEeCCcccccccC
Q 021657          146 PLDDNLILTGSADNSVR-MFDRRNLTSNGVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQ  224 (309)
Q Consensus       146 ~~~~~~l~~~~~dg~i~-i~d~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~dg~i~iwd~~~~~~~~~~  224 (309)
                        +++.++.++.++.+. +||+..      ++. ..+..+...+..++|+|||++ +++++.++.|++||+..       
T Consensus       347 --dg~~l~~~s~~~~l~~~~d~~~------~~~-~~l~~~~~~~~~~~~SpDG~~-la~~~~~~~v~~~d~~t-------  409 (1045)
T 1k32_A          347 --TKVAFIHGTREGDFLGIYDYRT------GKA-EKFEENLGNVFAMGVDRNGKF-AVVANDRFEIMTVDLET-------  409 (1045)
T ss_dssp             --SEEEEEEEETTEEEEEEEETTT------CCE-EECCCCCCSEEEEEECTTSSE-EEEEETTSEEEEEETTT-------
T ss_pred             --CCCeEEEEECCCceEEEEECCC------CCc-eEecCCccceeeeEECCCCCE-EEEECCCCeEEEEECCC-------
Confidence              678888888788888 889876      443 344467788999999999996 56888899999999986       


Q ss_pred             CCCCcCCCCceeeeecCCCcceeeEEEccCCCeEEEEecCC--CCCCCCCCeEEEEEccccccCChhhHhHhhhcccceE
Q 021657          225 GPRTTNYPAGLFFQHAGHRDKVVDFHWNASDPWTVVSVSDD--CDSTGGGGTLQIWRMSDLIYRPQDEVLAELEKFKAHV  302 (309)
Q Consensus       225 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~s~d--~~s~~~dg~v~vw~~~~~~~~~~~~~~~~~~~h~~~v  302 (309)
                              ........+|...+..++|+|++.+++.++..+  ...+..++.|++||+.      +++ +..+..|...+
T Consensus       410 --------g~~~~~~~~~~~~v~~~~~SpDG~~la~~~~~~~~~~~~~~~~~i~l~d~~------~g~-~~~l~~~~~~~  474 (1045)
T 1k32_A          410 --------GKPTVIERSREAMITDFTISDNSRFIAYGFPLKHGETDGYVMQAIHVYDME------GRK-IFAATTENSHD  474 (1045)
T ss_dssp             --------CCEEEEEECSSSCCCCEEECTTSCEEEEEEEECSSTTCSCCEEEEEEEETT------TTE-EEECSCSSSBE
T ss_pred             --------CceEEeccCCCCCccceEECCCCCeEEEEecCccccccCCCCCeEEEEECC------CCc-EEEeeCCCccc
Confidence                    223334457888999999999998776544310  0012334699999998      444 56677788888


Q ss_pred             EEeeeCC
Q 021657          303 ISCTSKP  309 (309)
Q Consensus       303 ~~~~~~P  309 (309)
                      ..++|+|
T Consensus       475 ~~~~~sp  481 (1045)
T 1k32_A          475 YAPAFDA  481 (1045)
T ss_dssp             EEEEECT
T ss_pred             CCceEcC
Confidence            8899987

>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*

Probab=99.86  E-value=4.8e-20  Score=148.30  Aligned_cols=225  Identities=12%  Similarity=0.128  Sum_probs=159.8

Q ss_pred             eEEEEECCCCCEE-EEecCCCcEEEEeCCccccccccCCc-------------cccccCCCCceeecCCCCCCCCcccCC
Q 021657           12 EFALAMCPTEPYV-LSGGKDKSVVLWSIQDHITSSATDPA-------------TAKSAGSSGSIIKQSPKPGDGNDKAAD   77 (309)
Q Consensus        12 V~~~~~~~~~~~l-~t~~~dg~i~vwd~~~~~~~~~~~~~-------------~~~~~~~~~~~~~~~~~~~~~~~~~~~   77 (309)
                      +..++|+|+|+++ ++...++.|.+||.+++.........             .............+.....++.+.+|+
T Consensus        91 ~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~i~~~d  170 (353)
T 3vgz_A           91 PFGATINNTTQTLWFGNTVNSAVTAIDAKTGEVKGRLVLDDRKRTEEVRPLQPRELVADDATNTVYISGIGKESVIWVVD  170 (353)
T ss_dssp             CCSEEEETTTTEEEEEETTTTEEEEEETTTCCEEEEEESCCCCCCSSCCCCEEEEEEEETTTTEEEEEEESSSCEEEEEE
T ss_pred             cceEEECCCCCEEEEEecCCCEEEEEeCCCCeeEEEEecCCCccccccCCCCCceEEECCCCCEEEEEecCCCceEEEEc
Confidence            5688999999955 55666899999999877433222111             001111122222222223356788899


Q ss_pred             CCCcCcccccccccCCeEEEEEecCCCcEEEEEcCCCeEEEEEcCCCCcceEEEeec----cCCceeEEEeccCCCCeEE
Q 021657           78 GPSVGPRGIYNGHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPVIKVEKA----HDADLHCVDWNPLDDNLIL  153 (309)
Q Consensus        78 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~----~~~~v~~~~~~~~~~~~l~  153 (309)
                      ..+.+....+..+...+.+++|+|++ ..+++++.++.|.+||+.+++  ....+..    +...+..++|+| +++.++
T Consensus       171 ~~~~~~~~~~~~~~~~~~~~~~s~dg-~~l~~~~~~~~i~~~d~~~~~--~~~~~~~~~~~~~~~~~~~~~s~-dg~~l~  246 (353)
T 3vgz_A          171 GGNIKLKTAIQNTGKMSTGLALDSEG-KRLYTTNADGELITIDTADNK--ILSRKKLLDDGKEHFFINISLDT-ARQRAF  246 (353)
T ss_dssp             TTTTEEEEEECCCCTTCCCCEEETTT-TEEEEECTTSEEEEEETTTTE--EEEEEECCCSSSCCCEEEEEEET-TTTEEE
T ss_pred             CCCCceEEEecCCCCccceEEECCCC-CEEEEEcCCCeEEEEECCCCe--EEEEEEcCCCCCCcccceEEECC-CCCEEE
Confidence            88888877777566678899999999 678888889999999998877  4444332    455678899999 888666


Q ss_pred             EEcC-CCcEEEEecCCCCCCCCCCceeeeccCCCCeeEEEEecCCCcEEEEecCCCcEEEEeCCcccccccCCCCCcCCC
Q 021657          154 TGSA-DNSVRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYP  232 (309)
Q Consensus       154 ~~~~-dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~  232 (309)
                      +++. ++.|.+||+.+      ++.+..+....  ...++|+|++++++++...++.|.+||+.+               
T Consensus       247 ~~~~~~~~v~~~d~~~------~~~~~~~~~~~--~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~---------------  303 (353)
T 3vgz_A          247 ITDSKAAEVLVVDTRN------GNILAKVAAPE--SLAVLFNPARNEAYVTHRQAGKVSVIDAKS---------------  303 (353)
T ss_dssp             EEESSSSEEEEEETTT------CCEEEEEECSS--CCCEEEETTTTEEEEEETTTTEEEEEETTT---------------
T ss_pred             EEeCCCCEEEEEECCC------CcEEEEEEcCC--CceEEECCCCCEEEEEECCCCeEEEEECCC---------------
Confidence            5554 59999999988      77777776433  257999999998887887899999999987               


Q ss_pred             CceeeeecCCCcceeeEEEccCCCeEEEEecC
Q 021657          233 AGLFFQHAGHRDKVVDFHWNASDPWTVVSVSD  264 (309)
Q Consensus       233 ~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~s~  264 (309)
                      .+.+..+.. ...+.+++|+|++.+++++...
T Consensus       304 ~~~~~~~~~-~~~~~~~~~s~dg~~l~v~~~~  334 (353)
T 3vgz_A          304 YKVVKTFDT-PTHPNSLALSADGKTLYVSVKQ  334 (353)
T ss_dssp             TEEEEEEEC-CSEEEEEEECTTSCEEEEEEEC
T ss_pred             CeEEEEEec-CCCCCeEEEcCCCCEEEEEEcc
Confidence            222333332 3467999999999988877654

>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*

Probab=99.86  E-value=1.1e-20  Score=151.83  Aligned_cols=237  Identities=8%  Similarity=0.052  Sum_probs=154.3

Q ss_pred             EEEECCCCCEEEEecCCCcEEEEeCCccccccccCC-----ccccccCCCCceeecCCCCCCCCcccCCCCCcCcccccc
Q 021657           14 ALAMCPTEPYVLSGGKDKSVVLWSIQDHITSSATDP-----ATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYN   88 (309)
Q Consensus        14 ~~~~~~~~~~l~t~~~dg~i~vwd~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   88 (309)
                      .+++++++.++++++.+++|++||+.++........     ..............+ .....+.+.+|+..+.+.+..+.
T Consensus         4 g~~~~~~~~~~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~v-~~~~~~~i~~~d~~t~~~~~~~~   82 (349)
T 1jmx_B            4 GPALKAGHEYMIVTNYPNNLHVVDVASDTVYKSCVMPDKFGPGTAMMAPDNRTAYV-LNNHYGDIYGIDLDTCKNTFHAN   82 (349)
T ss_dssp             CCCCCTTCEEEEEEETTTEEEEEETTTTEEEEEEECSSCCSSCEEEECTTSSEEEE-EETTTTEEEEEETTTTEEEEEEE
T ss_pred             cccccCCCEEEEEeCCCCeEEEEECCCCcEEEEEecCCCCCCceeEECCCCCEEEE-EeCCCCcEEEEeCCCCcEEEEEE
Confidence            567888999999999999999999987743322211     111112222221111 12345678888888777665554


Q ss_pred             cc------cCCeEEEEEecCCCcEEEEEcCC------------CeEEEEEcCCCCcc-eEEEeeccCCceeEEEeccCCC
Q 021657           89 GH------EDTVEDVTFCPSSAQEFCSVGDD------------SCLILWDARVGTSP-VIKVEKAHDADLHCVDWNPLDD  149 (309)
Q Consensus        89 ~~------~~~v~~~~~~~~~~~~l~s~~~d------------g~i~iwd~~~~~~~-~~~~~~~~~~~v~~~~~~~~~~  149 (309)
                      ..      ...+..++|+|+| +++++++.+            +.|.+||+.+++.. ..... .+...+.+++|+| ++
T Consensus        83 ~~~~~~~~~~~~~~~~~spdg-~~l~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~-~~~~~~~~~~~s~-dg  159 (349)
T 1jmx_B           83 LSSVPGEVGRSMYSFAISPDG-KEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPVRTF-PMPRQVYLMRAAD-DG  159 (349)
T ss_dssp             SCCSTTEEEECSSCEEECTTS-SEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGBCCSEEE-ECCSSCCCEEECT-TS
T ss_pred             cccccccccccccceEECCCC-CEEEEEcccccccccccccCCCeEEEEECCCccccceeeec-cCCCcccceeECC-CC
Confidence            32      2337889999999 667776654            89999999874421 12223 2344688999999 88


Q ss_pred             CeEEEEcCCCcEEEEecCCCCCCCCCCceeeeccCC--------------------------------------------
Q 021657          150 NLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGHS--------------------------------------------  185 (309)
Q Consensus       150 ~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~--------------------------------------------  185 (309)
                      + +++++  +.|.+||+.+      ++.+..+....                                            
T Consensus       160 ~-l~~~~--~~i~~~d~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~  230 (349)
T 1jmx_B          160 S-LYVAG--PDIYKMDVKT------GKYTVALPLRNWNRKGYSAPDVLYFWPHQSPRHEFSMLYTIARFKDDKQDPATAD  230 (349)
T ss_dssp             C-EEEES--SSEEEECTTT------CCEEEEECSTTCCCTTBCCCBCCCCCCCCCTTCEEEEEEEEEEC-------CCCE
T ss_pred             c-EEEcc--CcEEEEeCCC------CceeccccccccCCccccCccceeeecCCCcceeEEeeeeeeecCCCcCCccccc
Confidence            8 55554  3499999987      54444433211                                            


Q ss_pred             ------------------------CCeeEEEEec-CCCcEEEEecCCCcEEEEeCCcccccccCCCCCcCCCCceeeeec
Q 021657          186 ------------------------AAVLCVQWSP-DKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHA  240 (309)
Q Consensus       186 ------------------------~~v~~~~~~~-~~~~l~~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~  240 (309)
                                              ..+..++|+| ++++++ ++  ++.|.+||+.+               .+.+..+.
T Consensus       231 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~dg~~l~-~~--~~~v~~~d~~~---------------~~~~~~~~  292 (349)
T 1jmx_B          231 LLYGYLSVDLKTGKTHTQEFADLTELYFTGLRSPKDPNQIY-GV--LNRLAKYDLKQ---------------RKLIKAAN  292 (349)
T ss_dssp             EEEEEEEEETTTCCEEEEEEEECSSCEEEEEECSSCTTEEE-EE--ESEEEEEETTT---------------TEEEEEEE
T ss_pred             cceeEEEEeccCCcEEecccccCCCcceeeEecCCCCCEEE-EE--cCeEEEEECcc---------------CeEEEEEc
Confidence                                    1345677889 999755 55  88999999987               22222222


Q ss_pred             CCCcceeeEEEccCCCeEEEEecCCCCCCCCCCeEEEEEccccccCChhhHhHhhh
Q 021657          241 GHRDKVVDFHWNASDPWTVVSVSDDCDSTGGGGTLQIWRMSDLIYRPQDEVLAELE  296 (309)
Q Consensus       241 ~~~~~v~~~~~~~~~~~~~~s~s~d~~s~~~dg~v~vw~~~~~~~~~~~~~~~~~~  296 (309)
                       ....+.+++|+|++.++++ ++.+       +.|++||+.      +.+.+..++
T Consensus       293 -~~~~~~~~~~s~dg~~l~~-~~~~-------~~v~v~d~~------~~~~~~~~~  333 (349)
T 1jmx_B          293 -LDHTYYCVAFDKKGDKLYL-GGTF-------NDLAVFNPD------TLEKVKNIK  333 (349)
T ss_dssp             -CSSCCCEEEECSSSSCEEE-ESBS-------SEEEEEETT------TTEEEEEEE
T ss_pred             -CCCCccceEECCCCCEEEE-ecCC-------CeEEEEecc------ccceeeeee
Confidence             2335679999999988775 3333       899999998      555555544

>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*

Probab=99.86  E-value=6.1e-20  Score=161.09  Aligned_cols=249  Identities=11%  Similarity=0.073  Sum_probs=164.1

Q ss_pred             cCCCCCcceEEEEECCCCCEEEEecCCCcEEEEeCCc-----cccccccCC--c----------------cccccCCCCc
Q 021657            4 LTGHQDNAEFALAMCPTEPYVLSGGKDKSVVLWSIQD-----HITSSATDP--A----------------TAKSAGSSGS   60 (309)
Q Consensus         4 l~~H~~~~V~~~~~~~~~~~l~t~~~dg~i~vwd~~~-----~~~~~~~~~--~----------------~~~~~~~~~~   60 (309)
                      +..|.+ .+.+++|+|||++|+++ .|+.|++||+.+     +........  .                ..........
T Consensus       116 l~~~~~-~~~~~~~SpdG~~la~~-~~~~i~v~~~~~~~~~~g~~~~~~~~~~~~~~~g~~~~~ee~~~~~~~~~SpDg~  193 (706)
T 2z3z_A          116 LFDTNE-ETASLDFSPVGDRVAYV-RNHNLYIARGGKLGEGMSRAIAVTIDGTETLVYGQAVHQREFGIEKGTFWSPKGS  193 (706)
T ss_dssp             EECCTT-CCTTCEECTTSSEEEEE-ETTEEEEEECBCTTSCCCCCEESCSCCBTTEEESSCCGGGCTTCCCSEEECTTSS
T ss_pred             ccCCcc-cccCCcCCCCCCEEEEE-ECCeEEEEecCcccccCCCcEEeccCCCCCeEcccchhhhhcCCCceEEECCCCC
Confidence            344555 67889999999999985 689999999987     533221111  1                1111222222


Q ss_pred             eeecCC-------------------------------CCCCCCcccCCCCCcCccccc--ccccCCeEEEEEecCCCcEE
Q 021657           61 IIKQSP-------------------------------KPGDGNDKAADGPSVGPRGIY--NGHEDTVEDVTFCPSSAQEF  107 (309)
Q Consensus        61 ~~~~~~-------------------------------~~~~~~~~~~~~~~~~~~~~~--~~~~~~v~~~~~~~~~~~~l  107 (309)
                      ...+..                               ......+.+|+..+.+.....  ..|...+.+++|+|+| +.|
T Consensus       194 ~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~spdg-~~l  272 (706)
T 2z3z_A          194 CLAFYRMDQSMVKPTPIVDYHPLEAESKPLYYPMAGTPSHHVTVGIYHLATGKTVYLQTGEPKEKFLTNLSWSPDE-NIL  272 (706)
T ss_dssp             EEEEEEEECTTSCCEEEEECCSSSCEEEEECCCBTTSCCCEEEEEEEETTTTEEEECCCCSCTTCEEEEEEECTTS-SEE
T ss_pred             EEEEEEECCCCCceEEeeccCCCCCceEEeeCCCCCCCCCeeEEEEEECCCCceEeeccCCCCceeEeeEEEECCC-CEE
Confidence            111111                               113456778887776644333  2466789999999999 667


Q ss_pred             EEEcCCC-----eEEEEEcCCCCcceEEEee-ccCC---ceeEEEecc-CCCCeEEEEcCCCcEEEEecCCCCCCCCCCc
Q 021657          108 CSVGDDS-----CLILWDARVGTSPVIKVEK-AHDA---DLHCVDWNP-LDDNLILTGSADNSVRMFDRRNLTSNGVGSP  177 (309)
Q Consensus       108 ~s~~~dg-----~i~iwd~~~~~~~~~~~~~-~~~~---~v~~~~~~~-~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~  177 (309)
                      ++++.++     .|.+||+.+++. ...... .+..   .+.+++|+| .++++++++..|+.+++|++...     +..
T Consensus       273 ~~~~~~~~~~~~~v~~~d~~~g~~-~~~~~~~~~~~~~~~~~~~~~sp~~dg~~l~~~~~~g~~~l~~~~~~-----~~~  346 (706)
T 2z3z_A          273 YVAEVNRAQNECKVNAYDAETGRF-VRTLFVETDKHYVEPLHPLTFLPGSNNQFIWQSRRDGWNHLYLYDTT-----GRL  346 (706)
T ss_dssp             EEEEECTTSCEEEEEEEETTTCCE-EEEEEEEECSSCCCCCSCCEECTTCSSEEEEEECTTSSCEEEEEETT-----SCE
T ss_pred             EEEEeCCCCCeeEEEEEECCCCce-eeEEEEccCCCeECccCCceeecCCCCEEEEEEccCCccEEEEEECC-----CCE
Confidence            7766665     899999988832 222221 2222   346789998 24668899999999999988721     566


Q ss_pred             eeeeccCCCCeeE-EEEecCCCcEEEEecCCC----cEEEEeCCcccccccCCCCCcCCCCceeeeecCCCcceeeEEEc
Q 021657          178 INKFEGHSAAVLC-VQWSPDKSSVFGSSAEDG----LLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKVVDFHWN  252 (309)
Q Consensus       178 ~~~~~~~~~~v~~-~~~~~~~~~l~~~~~~dg----~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~  252 (309)
                      +..+..+...+.. ++|+|+++.+++++..++    .|..||+.. ++               ...+ .|...+.+++|+
T Consensus       347 ~~~l~~~~~~v~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~-~~---------------~~~l-~~~~~~~~~~~s  409 (706)
T 2z3z_A          347 IRQVTKGEWEVTNFAGFDPKGTRLYFESTEASPLERHFYCIDIKG-GK---------------TKDL-TPESGMHRTQLS  409 (706)
T ss_dssp             EEECCCSSSCEEEEEEECTTSSEEEEEESSSCTTCBEEEEEETTC-CC---------------CEES-CCSSSEEEEEEC
T ss_pred             EEecCCCCeEEEeeeEEcCCCCEEEEEecCCCCceEEEEEEEcCC-CC---------------ceec-cCCCceEEEEEC
Confidence            7777777777876 799999998877777766    566666554 11               1111 255678999999


Q ss_pred             cCCCeEEEEecCCCCCCCCCCeEEEEEccc
Q 021657          253 ASDPWTVVSVSDDCDSTGGGGTLQIWRMSD  282 (309)
Q Consensus       253 ~~~~~~~~s~s~d~~s~~~dg~v~vw~~~~  282 (309)
                      |++.+++.+++.+    ..-+.|++||+..
T Consensus       410 pdg~~l~~~~~~~----~~p~~i~l~d~~~  435 (706)
T 2z3z_A          410 PDGSAIIDIFQSP----TVPRKVTVTNIGK  435 (706)
T ss_dssp             TTSSEEEEEEECS----SCSCEEEEEESSS
T ss_pred             CCCCEEEEEecCC----CCCcEEEEEECCC
Confidence            9999887766532    2336799999874

>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*

Probab=99.85  E-value=4.7e-20  Score=168.12  Aligned_cols=224  Identities=10%  Similarity=0.060  Sum_probs=160.0

Q ss_pred             ccCCCCCcceEEEEECCCCCEEEEecCCCcEEEEeCCccccccccCC---------------ccccccC-CCCceeecCC
Q 021657            3 ILTGHQDNAEFALAMCPTEPYVLSGGKDKSVVLWSIQDHITSSATDP---------------ATAKSAG-SSGSIIKQSP   66 (309)
Q Consensus         3 ~l~~H~~~~V~~~~~~~~~~~l~t~~~dg~i~vwd~~~~~~~~~~~~---------------~~~~~~~-~~~~~~~~~~   66 (309)
                      .+.+|..  +..++|+|+|++|+.+ .++.|.+||+...... ....               ....... .......+..
T Consensus       240 ~l~~~~~--~~~~~~SpDG~~la~~-~~~~i~~~d~~~~~l~-~l~~~~~~~~~~~~~~~~~v~~~~~S~pdG~~la~~~  315 (1045)
T 1k32_A          240 KHTSFTD--YYPRHLNTDGRRILFS-KGGSIYIFNPDTEKIE-KIEIGDLESPEDRIISIPSKFAEDFSPLDGDLIAFVS  315 (1045)
T ss_dssp             ECCCCCS--SCEEEEEESSSCEEEE-ETTEEEEECTTTCCEE-ECCCCCCCBCCSEEEECGGGGEEEEEECGGGCEEEEE
T ss_pred             EecCCCC--cceeeEcCCCCEEEEE-eCCEEEEecCCceEee-eeccCcccccccccccccccceeeecCCCCCEEEEEE
Confidence            4555554  4577999999999887 4899999998443221 1111               1111111 1111111111


Q ss_pred             CCCCCCcccCCCCCcCcccccccccC-CeEEEEEecCCCcEEEEEcCCCeEE-EEEcCCCCcceEEEeeccCCceeEEEe
Q 021657           67 KPGDGNDKAADGPSVGPRGIYNGHED-TVEDVTFCPSSAQEFCSVGDDSCLI-LWDARVGTSPVIKVEKAHDADLHCVDW  144 (309)
Q Consensus        67 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~v~~~~~~~~~~~~l~s~~~dg~i~-iwd~~~~~~~~~~~~~~~~~~v~~~~~  144 (309)
                         .+.+.+|+....... .+..|.. .+..++|+ +| ..|+.++.++.+. +||+..++  . ..+..|...+..++|
T Consensus       316 ---~~~i~~~~~~~~~~~-~~~~~~~~~~~~~~~s-dg-~~l~~~s~~~~l~~~~d~~~~~--~-~~l~~~~~~~~~~~~  386 (1045)
T 1k32_A          316 ---RGQAFIQDVSGTYVL-KVPEPLRIRYVRRGGD-TK-VAFIHGTREGDFLGIYDYRTGK--A-EKFEENLGNVFAMGV  386 (1045)
T ss_dssp             ---TTEEEEECTTSSBEE-ECSCCSCEEEEEECSS-SE-EEEEEEETTEEEEEEEETTTCC--E-EECCCCCCSEEEEEE
T ss_pred             ---cCEEEEEcCCCCceE-EccCCCcceEEeeeEc-CC-CeEEEEECCCceEEEEECCCCC--c-eEecCCccceeeeEE
Confidence               456777777665543 3556777 89999999 88 7788888888888 99988766  3 333477788999999


Q ss_pred             ccCCCCeEEEEcCCCcEEEEecCCCCCCCCCCceeeeccCCCCeeEEEEecCCCcEEEEecCC----------CcEEEEe
Q 021657          145 NPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAED----------GLLNIWD  214 (309)
Q Consensus       145 ~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~d----------g~i~iwd  214 (309)
                      +| ++++|++++.++.|++||+.+      ++.......|...+.+++|+|||++++ .++.+          +.|++||
T Consensus       387 Sp-DG~~la~~~~~~~v~~~d~~t------g~~~~~~~~~~~~v~~~~~SpDG~~la-~~~~~~~~~~~~~~~~~i~l~d  458 (1045)
T 1k32_A          387 DR-NGKFAVVANDRFEIMTVDLET------GKPTVIERSREAMITDFTISDNSRFIA-YGFPLKHGETDGYVMQAIHVYD  458 (1045)
T ss_dssp             CT-TSSEEEEEETTSEEEEEETTT------CCEEEEEECSSSCCCCEEECTTSCEEE-EEEEECSSTTCSCCEEEEEEEE
T ss_pred             CC-CCCEEEEECCCCeEEEEECCC------CceEEeccCCCCCccceEECCCCCeEE-EEecCccccccCCCCCeEEEEE
Confidence            99 999999999999999999998      777777767888899999999999764 44433          4899999


Q ss_pred             CCcccccccCCCCCcCCCCceeeeecCCCcceeeEEEccCCCeEEEEec
Q 021657          215 YEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKVVDFHWNASDPWTVVSVS  263 (309)
Q Consensus       215 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~s  263 (309)
                      +..               .. ...+..|...+..++|+|++.+++....
T Consensus       459 ~~~---------------g~-~~~l~~~~~~~~~~~~spdG~~l~~~s~  491 (1045)
T 1k32_A          459 MEG---------------RK-IFAATTENSHDYAPAFDADSKNLYYLSY  491 (1045)
T ss_dssp             TTT---------------TE-EEECSCSSSBEEEEEECTTSCEEEEEES
T ss_pred             CCC---------------Cc-EEEeeCCCcccCCceEcCCCCEEEEEec
Confidence            986               11 3455667778899999999998775443

>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*

Probab=99.85  E-value=6.3e-20  Score=146.57  Aligned_cols=228  Identities=11%  Similarity=0.127  Sum_probs=148.2

Q ss_pred             CEEEEecCCCcEEEEeCCccccccccCC------ccccccCCCCceeecCCCCCCCCcccCCCCCcCccccccc-c----
Q 021657           22 PYVLSGGKDKSVVLWSIQDHITSSATDP------ATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNG-H----   90 (309)
Q Consensus        22 ~~l~t~~~dg~i~vwd~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~----   90 (309)
                      ++|++++.++.|++||+.++........      .............. ......+.+.+|+..+.+.+..+.. +    
T Consensus         2 ~~~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~-v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~   80 (337)
T 1pby_B            2 DYILAPARPDKLVVIDTEKMAVDKVITIADAGPTPMVPMVAPGGRIAY-ATVNKSESLVKIDLVTGETLGRIDLSTPEER   80 (337)
T ss_dssp             EEEEEEETTTEEEEEETTTTEEEEEEECTTCTTCCCCEEECTTSSEEE-EEETTTTEEEEEETTTCCEEEEEECCBTTEE
T ss_pred             cEEEEcCCCCeEEEEECCCCcEEEEEEcCCCCCCccceEEcCCCCEEE-EEeCCCCeEEEEECCCCCeEeeEEcCCcccc
Confidence            4788899999999999987643322211      11111222221111 1123356788888877776655542 1    


Q ss_pred             cCCeEEEEEecCCCcEEEEEc------------CCCeEEEEEcCCCCcceEEEeeccCCceeEEEeccCCCCeEEEEcCC
Q 021657           91 EDTVEDVTFCPSSAQEFCSVG------------DDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSAD  158 (309)
Q Consensus        91 ~~~v~~~~~~~~~~~~l~s~~------------~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d  158 (309)
                      ...+..++|+|++ ..+++++            .++.|.+||+.+++  ....+.. ...+.+++|+| ++++++++  +
T Consensus        81 ~~~~~~~~~s~dg-~~l~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~--~~~~~~~-~~~~~~~~~s~-dg~~l~~~--~  153 (337)
T 1pby_B           81 VKSLFGAALSPDG-KTLAIYESPVRLELTHFEVQPTRVALYDAETLS--RRKAFEA-PRQITMLAWAR-DGSKLYGL--G  153 (337)
T ss_dssp             EECTTCEEECTTS-SEEEEEEEEEEECSSCEEECCCEEEEEETTTTE--EEEEEEC-CSSCCCEEECT-TSSCEEEE--S
T ss_pred             cccccceEECCCC-CEEEEEecccccccccccccCceEEEEECCCCc--EEEEEeC-CCCcceeEECC-CCCEEEEe--C
Confidence            2257789999998 5666664            57999999998766  4444433 45678999999 88888887  6


Q ss_pred             CcEEEEecCCCCCCCCCCceeeec--------------------------------------------------------
Q 021657          159 NSVRMFDRRNLTSNGVGSPINKFE--------------------------------------------------------  182 (309)
Q Consensus       159 g~i~i~d~~~~~~~~~~~~~~~~~--------------------------------------------------------  182 (309)
                      +.|++||+.+.      +.+..+.                                                        
T Consensus       154 ~~i~~~d~~~~------~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~  227 (337)
T 1pby_B          154 RDLHVMDPEAG------TLVEDKPIQSWEAETYAQPDVLAVWNQHESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLE  227 (337)
T ss_dssp             SSEEEEETTTT------EEEEEECSTTTTTTTBCCCBCCCCCCCCTTTTEEEEEEEEEBTTSCTTSGGGEEEEEEEEETT
T ss_pred             CeEEEEECCCC------cEeeeeeccccCCCceeCCCccEEeeeccCCCceeeeeeccccccccccccccccceEEEeCC
Confidence            88999998762      2222111                                                        


Q ss_pred             ----------cCCCCeeEEEEecCCCcEEEEecCCCcEEEEeCCcccccccCCCCCcCCCCceeeeecCCCcceeeEEEc
Q 021657          183 ----------GHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKVVDFHWN  252 (309)
Q Consensus       183 ----------~~~~~v~~~~~~~~~~~l~~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~  252 (309)
                                .+...+..++|+|++++++ ++  ++.|.+||+..               .+.+..+. ....+.+++|+
T Consensus       228 ~~~~~~~~~~~~~~~~~~~~~s~dg~~l~-~~--~~~v~~~d~~~---------------~~~~~~~~-~~~~~~~~~~s  288 (337)
T 1pby_B          228 TGEMAMREVRIMDVFYFSTAVNPAKTRAF-GA--YNVLESFDLEK---------------NASIKRVP-LPHSYYSVNVS  288 (337)
T ss_dssp             TCCEEEEEEEECSSCEEEEEECTTSSEEE-EE--ESEEEEEETTT---------------TEEEEEEE-CSSCCCEEEEC
T ss_pred             CCCceEeecCCCCCceeeEEECCCCCEEE-Ee--CCeEEEEECCC---------------CcCcceec-CCCceeeEEEC
Confidence                      1112355689999999765 44  78999999876               12222222 23457899999


Q ss_pred             cCCCeEEEEecCCCCCCCCCCeEEEEEccccccCChhhHhHhhh
Q 021657          253 ASDPWTVVSVSDDCDSTGGGGTLQIWRMSDLIYRPQDEVLAELE  296 (309)
Q Consensus       253 ~~~~~~~~s~s~d~~s~~~dg~v~vw~~~~~~~~~~~~~~~~~~  296 (309)
                      |++.+++++ +.       |+.|++||+.      +++.+..++
T Consensus       289 ~dg~~l~~~-~~-------~~~i~v~d~~------~~~~~~~~~  318 (337)
T 1pby_B          289 TDGSTVWLG-GA-------LGDLAAYDAE------TLEKKGQVD  318 (337)
T ss_dssp             TTSCEEEEE-SB-------SSEEEEEETT------TCCEEEEEE
T ss_pred             CCCCEEEEE-cC-------CCcEEEEECc------CCcEEEEEE
Confidence            999877753 33       4899999998      455555444

>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1

Probab=99.84  E-value=1.5e-18  Score=140.32  Aligned_cols=245  Identities=11%  Similarity=0.079  Sum_probs=151.7

Q ss_pred             ceEEEEECCCCCEEEEecCCCcEEEEeCC-cccccccc-----CCccccccCCCCc--eeecCC-------CC----CCC
Q 021657           11 AEFALAMCPTEPYVLSGGKDKSVVLWSIQ-DHITSSAT-----DPATAKSAGSSGS--IIKQSP-------KP----GDG   71 (309)
Q Consensus        11 ~V~~~~~~~~~~~l~t~~~dg~i~vwd~~-~~~~~~~~-----~~~~~~~~~~~~~--~~~~~~-------~~----~~~   71 (309)
                      .+..++|+|+|++|++++.+ .|.+|++. ++......     .............  ......       +.    .++
T Consensus        41 ~~~~~a~spdg~~l~~~~~~-~v~~~~~~~~g~~~~~~~~~~~g~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~g  119 (365)
T 1jof_A           41 PISWMTFDHERKNIYGAAMK-KWSSFAVKSPTEIVHEASHPIGGHPRANDADTNTRAIFLLAAKQPPYAVYANPFYKFAG  119 (365)
T ss_dssp             CCSEEEECTTSSEEEEEEBT-EEEEEEEEETTEEEEEEEEECCSSGGGGCTTSCCEEEEEEECSSTTCCEEEEEESSSCC
T ss_pred             CCcEEEECCCCCEEEEEccc-eEEEEEECCCCCEEEeeEeecCCCCccEEECCCCCEEEEEEecCCcceeccceeecCCc
Confidence            45789999999999999888 99999986 44321110     0111112222222  111221       11    455


Q ss_pred             CcccCCCCC-cCcccccc----cccCCeEEEEEecCCCcEEEEEc-CCCeEEEEEcC-CCCcceEEEee--ccCCceeEE
Q 021657           72 NDKAADGPS-VGPRGIYN----GHEDTVEDVTFCPSSAQEFCSVG-DDSCLILWDAR-VGTSPVIKVEK--AHDADLHCV  142 (309)
Q Consensus        72 ~~~~~~~~~-~~~~~~~~----~~~~~v~~~~~~~~~~~~l~s~~-~dg~i~iwd~~-~~~~~~~~~~~--~~~~~v~~~  142 (309)
                      .+.+|+... ++....+.    .+...+.+++|+|+| ++++++. .++.|.+||+. +++........  .+...+..+
T Consensus       120 ~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~~spdG-~~l~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~~g~~p~~~  198 (365)
T 1jof_A          120 YGNVFSVSETGKLEKNVQNYEYQENTGIHGMVFDPTE-TYLYSADLTANKLWTHRKLASGEVELVGSVDAPDPGDHPRWV  198 (365)
T ss_dssp             EEEEEEECTTCCEEEEEEEEECCTTCCEEEEEECTTS-SEEEEEETTTTEEEEEEECTTSCEEEEEEEECSSTTCCEEEE
T ss_pred             eEEEEccCCCCcCcceEeeEEeCCCCcceEEEECCCC-CEEEEEcCCCCEEEEEEECCCCCEEEeeeEecCCCCCCCCEe
Confidence            677777653 33332232    245678999999999 5555544 57899999998 66532222232  235678999


Q ss_pred             EeccCCCCeEEEEcC-CCcEEEEecCCCCCCCCCCce------eeecc----CCC------CeeEEE-EecCCCcEEEEe
Q 021657          143 DWNPLDDNLILTGSA-DNSVRMFDRRNLTSNGVGSPI------NKFEG----HSA------AVLCVQ-WSPDKSSVFGSS  204 (309)
Q Consensus       143 ~~~~~~~~~l~~~~~-dg~i~i~d~~~~~~~~~~~~~------~~~~~----~~~------~v~~~~-~~~~~~~l~~~~  204 (309)
                      +|+| +++++++++. ++.|.+|++....    ++..      ..+..    +..      .+..++ |+|||++|+++.
T Consensus       199 ~~sp-dg~~l~v~~~~~~~v~v~~~~~~~----g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~spdG~~l~v~~  273 (365)
T 1jof_A          199 AMHP-TGNYLYALMEAGNRICEYVIDPAT----HMPVYTHHSFPLIPPGIPDRDPETGKGLYRADVCALTFSGKYMFASS  273 (365)
T ss_dssp             EECT-TSSEEEEEETTTTEEEEEEECTTT----CCEEEEEEEEESSCTTCCCBCTTTSSBSEEEEEEEECTTSSEEEEEE
T ss_pred             EECC-CCCEEEEEECCCCeEEEEEEeCCC----CcEEEccceEEcCCCCcCCcccccccccccccEEEECCCCCEEEEEC
Confidence            9999 8988877664 7899999876311    3321      12211    121      478999 999999876544


Q ss_pred             cCCC-----cEEEEeCCcccccccCCCCCcCCCCceee-eecCCCcceeeEEEcc---CCCeEEEEecCCCCCCCCCCeE
Q 021657          205 AEDG-----LLNIWDYEKVGKKVEQGPRTTNYPAGLFF-QHAGHRDKVVDFHWNA---SDPWTVVSVSDDCDSTGGGGTL  275 (309)
Q Consensus       205 ~~dg-----~i~iwd~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~v~~~~~~~---~~~~~~~s~s~d~~s~~~dg~v  275 (309)
                      ..+.     .|.+|++...++..            .+. ....+...+..++|+|   ++.+++++...+       +.|
T Consensus       274 ~~~~~~~~~~i~v~~~~~~g~~~------------~~~~~~~~~~~~~~~~a~sp~~~dg~~l~v~~~~~-------~~v  334 (365)
T 1jof_A          274 RANKFELQGYIAGFKLRDCGSIE------------KQLFLSPTPTSGGHSNAVSPCPWSDEWMAITDDQE-------GWL  334 (365)
T ss_dssp             EESSTTSCCEEEEEEECTTSCEE------------EEEEEEECSSCCTTCCCEEECTTCTTEEEEECSSS-------CEE
T ss_pred             CCCCCCCCCeEEEEEECCCCCEE------------EeeeeeecCCCCcccceecCCCcCCCEEEEEEcCC-------CeE
Confidence            3333     89999996422211            111 1223445567899999   788877644443       899


Q ss_pred             EEEEcc
Q 021657          276 QIWRMS  281 (309)
Q Consensus       276 ~vw~~~  281 (309)
                      .+|++.
T Consensus       335 ~v~~~~  340 (365)
T 1jof_A          335 EIYRWK  340 (365)
T ss_dssp             EEEEEE
T ss_pred             EEEEEc
Confidence            999997

>1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens}

Probab=99.83  E-value=2.8e-20  Score=163.53  Aligned_cols=223  Identities=13%  Similarity=0.110  Sum_probs=143.8

Q ss_pred             EEEECCCCCEEEEecCCCcEEEEeCCccccccccCCccccccCCCCceeecCCCCCCCCcccCCCCCcCcccccccccC-
Q 021657           14 ALAMCPTEPYVLSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHED-   92 (309)
Q Consensus        14 ~~~~~~~~~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-   92 (309)
                      +++|+|+|++++++ .|+.|++||+.++..                                        ...+..|.. 
T Consensus        20 ~~~~s~dg~~~~~~-~d~~i~~~~~~~g~~----------------------------------------~~~~~~~~~~   58 (719)
T 1z68_A           20 FPNWISGQEYLHQS-ADNNIVLYNIETGQS----------------------------------------YTILSNRTMK   58 (719)
T ss_dssp             CCEESSSSEEEEEC-TTSCEEEEESSSCCE----------------------------------------EEEECHHHHH
T ss_pred             ccEECCCCeEEEEc-CCCCEEEEEcCCCcE----------------------------------------EEEEcccccc
Confidence            78999999655554 699999999985421                                        222222322 


Q ss_pred             --CeEEEEEecCCCcEEEEEcC---------CCeEEEEEcCCCCcceEEEeeccCCceeEEEeccCCCCeEEEEcCCCcE
Q 021657           93 --TVEDVTFCPSSAQEFCSVGD---------DSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSV  161 (309)
Q Consensus        93 --~v~~~~~~~~~~~~l~s~~~---------dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i  161 (309)
                        .+.+++|+|+| ++|+.++.         ++.|++||+.+++......+   ...+..++|+| +++.|+.+. ++.|
T Consensus        59 ~~~~~~~~~SpDg-~~la~~~~~~~~~~~s~~~~i~~~d~~~g~~~~~~~l---~~~~~~~~~SP-DG~~la~~~-~~~i  132 (719)
T 1z68_A           59 SVNASNYGLSPDR-QFVYLESDYSKLWRYSYTATYYIYDLSNGEFVRGNEL---PRPIQYLCWSP-VGSKLAYVY-QNNI  132 (719)
T ss_dssp             TTTCSEEEECTTS-SEEEEEEEEEECSSSCEEEEEEEEETTTTEECCSSCC---CSSBCCEEECS-STTCEEEEE-TTEE
T ss_pred             ccceeeEEECCCC-CeEEEEecCceeEEeecceEEEEEECCCCccccceec---CcccccceECC-CCCEEEEEE-CCeE
Confidence              48899999999 67777765         78999999987762000112   25688999999 999999885 7899


Q ss_pred             EEEecCCCCCCCCCCceeee-ccCCCC-----------------eeEEEEecCCCcEEEEecCCC---------------
Q 021657          162 RMFDRRNLTSNGVGSPINKF-EGHSAA-----------------VLCVQWSPDKSSVFGSSAEDG---------------  208 (309)
Q Consensus       162 ~i~d~~~~~~~~~~~~~~~~-~~~~~~-----------------v~~~~~~~~~~~l~~~~~~dg---------------  208 (309)
                      ++||+.+      ++..... .++...                 ..+++|+|||++| +.++.|.               
T Consensus       133 ~~~~~~~------g~~~~l~~~~~~~~v~~g~~~~v~~ee~~~~~~~~~wSPDG~~l-a~~~~d~~~~~~~~~~~~~~~~  205 (719)
T 1z68_A          133 YLKQRPG------DPPFQITFNGRENKIFNGIPDWVYEEEMLATKYALWWSPNGKFL-AYAEFNDTDIPVIAYSYYGDEQ  205 (719)
T ss_dssp             EEESSTT------SCCEECCCCCBTTTEEESSCCHHHHHHTTCSSCCEEECTTSSEE-EEEEEECTTSCEEEEEECCSSS
T ss_pred             EEEeCCC------CCcEEEecCCCcCCeEcccccceeeeecccCcccEEECCCCCEE-EEEEECCCCCceEEeeccCCCC
Confidence            9999987      4443322 222221                 2489999999975 4555331               


Q ss_pred             -------------------cEEEEeCCccccc--ccCCCCCcCCCCceeeeecCCCcceeeEEEccCCCeEEEEecCCCC
Q 021657          209 -------------------LLNIWDYEKVGKK--VEQGPRTTNYPAGLFFQHAGHRDKVVDFHWNASDPWTVVSVSDDCD  267 (309)
Q Consensus       209 -------------------~i~iwd~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~s~d~~  267 (309)
                                         .|++||+......  ..         ...-..+.+|...+..++|+|++ .++++....  
T Consensus       206 ~~~~~~~~yp~~g~~~~~~~l~~~d~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~SpD~-~~~~~~~~~--  273 (719)
T 1z68_A          206 YPRTINIPYPKAGAKNPVVRIFIIDTTYPAYVGPQE---------VPVPAMIASSDYYFSWLTWVTDE-RVCLQWLKR--  273 (719)
T ss_dssp             SCEEEEEECCBTTSCCCEEEEEEEESSCHHHHCCEE---------CCCCHHHHTSCEEEEEEEESSSS-EEEEEEEES--
T ss_pred             CccceeecCCCCCCCCCeeEEEEEECCCCCccceeE---------ccCCccCCCCcceEEEeEEeCCC-eEEEEEecc--
Confidence                               6788888762210  00         00001234688889999999985 555553321  


Q ss_pred             CCCCCCeEEEEE----ccccccCChhhHhHhh----hcccceEE-----EeeeCC
Q 021657          268 STGGGGTLQIWR----MSDLIYRPQDEVLAEL----EKFKAHVI-----SCTSKP  309 (309)
Q Consensus       268 s~~~dg~v~vw~----~~~~~~~~~~~~~~~~----~~h~~~v~-----~~~~~P  309 (309)
                       ......|.+||    +.      ++++...+    .+|.+.+.     .++|+|
T Consensus       274 -~~~~~~l~~~d~~~~~~------~g~~~~~~~~~~~~~~~~~~~~~~~~~~~sp  321 (719)
T 1z68_A          274 -VQNVSVLSICDFREDWQ------TWDCPKTQEHIEESRTGWAGGFFVSTPVFSY  321 (719)
T ss_dssp             -STTEEEEEEEEECSSSS------SEECCGGGEEEEECSSSCSSSSSCCCCEECT
T ss_pred             -ccCeEEEEEEcccCCCC------CCceEEEEecccccCCceEccccCCccEECC
Confidence             22235688899    65      44444444    35555555     566665

>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*

Probab=99.81  E-value=1.3e-16  Score=127.05  Aligned_cols=251  Identities=8%  Similarity=0.019  Sum_probs=166.6

Q ss_pred             ceEEEEECCCCCEEEEecCCCcEEEEeCCccccccccCCccccccCCCCceeecCCCCCCCCcccCCCCCcCcccccc-c
Q 021657           11 AEFALAMCPTEPYVLSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYN-G   89 (309)
Q Consensus        11 ~V~~~~~~~~~~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~   89 (309)
                      .|.+++++|+|+++++...++.+++++......   .....             ......+.+.+++..+.+.+..+. +
T Consensus        25 ~v~~va~d~~G~l~v~~~~~~~~~~~~~~~~~~---~~~~~-------------~~~~~~~~i~~~d~~~g~~~~~~~~~   88 (329)
T 3fvz_A           25 QVSGVALDSKNNLVIFHRGDHVWDGNSFDSKFV---YQQRG-------------LGPIEEDTILVIDPNNAEILQSSGKN   88 (329)
T ss_dssp             CEEEEEECTTCCEEEEECTTCCCCTTSBCTTSC---BSCGG-------------GCSCCSCCEEEECTTTCCEEEEECTT
T ss_pred             CceEEEECCCCCEEEEeCCCCeEEeeccCccee---ecccc-------------cccccCCcEEEEECCCCeEEeccCCC
Confidence            689999999999999988886554443322100   00000             000123445555555555443332 3


Q ss_pred             ccCCeEEEEEecCCCcEEEEEcCCCeEEEEEcCCCCcceEEEe---------eccCCceeEEEeccCCCCeEEEEc-CCC
Q 021657           90 HEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPVIKVE---------KAHDADLHCVDWNPLDDNLILTGS-ADN  159 (309)
Q Consensus        90 ~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~---------~~~~~~v~~~~~~~~~~~~l~~~~-~dg  159 (309)
                      +-.....++++|+| .++++...++.|++||...... ....+         ..+......++++|.++.++++.+ .++
T Consensus        89 ~~~~p~gia~d~~g-~l~v~d~~~~~v~~~~~~g~~~-~~~~~~~~~~~g~~~~~~~~P~~ia~~~~~g~lyv~d~~~~~  166 (329)
T 3fvz_A           89 LFYLPHGLSIDTDG-NYWVTDVALHQVFKLDPHSKEG-PLLILGRSMQPGSDQNHFCQPTDVAVEPSTGAVFVSDGYCNS  166 (329)
T ss_dssp             TCSSEEEEEECTTS-CEEEEETTTTEEEEECTTCSSC-CSEEESBTTBCCCSTTCCSSEEEEEECTTTCCEEEEECSSCC
T ss_pred             ccCCceEEEECCCC-CEEEEECCCCEEEEEeCCCCeE-EEEEecccCCCCCCccccCCCcEEEEeCCCCeEEEEeCCCCC
Confidence            44578899999998 6888888899999999864421 12222         233446889999985577777775 689


Q ss_pred             cEEEEecCCCCCCCCCCceeeeccCC----------CCeeEEEEecCCCcEEEEecCCCcEEEEeCCcccccccCCCCCc
Q 021657          160 SVRMFDRRNLTSNGVGSPINKFEGHS----------AAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTT  229 (309)
Q Consensus       160 ~i~i~d~~~~~~~~~~~~~~~~~~~~----------~~v~~~~~~~~~~~l~~~~~~dg~i~iwd~~~~~~~~~~~~~~~  229 (309)
                      .|++||. +      +..+..+....          .....|+++|++..++++...++.|++||..+ ++         
T Consensus       167 ~I~~~~~-~------g~~~~~~~~~g~~~~~~~~~~~~p~gia~d~~~g~l~v~d~~~~~I~~~~~~~-G~---------  229 (329)
T 3fvz_A          167 RIVQFSP-S------GKFVTQWGEESSGSSPRPGQFSVPHSLALVPHLDQLCVADRENGRIQCFKTDT-KE---------  229 (329)
T ss_dssp             EEEEECT-T------SCEEEEECEECCSSSCCTTEESCEEEEEEETTTTEEEEEETTTTEEEEEETTT-CC---------
T ss_pred             eEEEEcC-C------CCEEEEeccCCCCCCCCCcccCCCcEEEEECCCCEEEEEECCCCEEEEEECCC-Cc---------
Confidence            9999994 3      66666664222          23789999999555888888999999999874 22         


Q ss_pred             CCCCceeeee--cCCCcceeeEEEccCCCeEEEEecCCCCCCCCCCeEEEEEccccccCChhhHhHhh---hcccceEEE
Q 021657          230 NYPAGLFFQH--AGHRDKVVDFHWNASDPWTVVSVSDDCDSTGGGGTLQIWRMSDLIYRPQDEVLAEL---EKFKAHVIS  304 (309)
Q Consensus       230 ~~~~~~~~~~--~~~~~~v~~~~~~~~~~~~~~s~s~d~~s~~~dg~v~vw~~~~~~~~~~~~~~~~~---~~h~~~v~~  304 (309)
                           .+..+  ..+...+.+++++|  ..++++.+....+...+..|++|++.      +++.+..+   .++...+..
T Consensus       230 -----~~~~~~~~~~~~~~~~~~~~p--g~~~~~~g~~~v~~~~~~~v~~~~~~------~g~~~~~~~~~~~~~~~p~~  296 (329)
T 3fvz_A          230 -----FVREIKHASFGRNVFAISYIP--GFLFAVNGKPYFGDQEPVQGFVMNFS------SGEIIDVFKPVRKHFDMPHD  296 (329)
T ss_dssp             -----EEEEECCTTTTTCEEEEEEET--TEEEEEECCCCTTCSCCCCEEEEETT------TCCEEEEECCSSSCCSSEEE
T ss_pred             -----EEEEEeccccCCCcceeeecC--CEEEEeCCCEEeccCCCcEEEEEEcC------CCeEEEEEcCCCCccCCeeE
Confidence                 22222  34566788999999  45555555554456667899999988      56665555   355566778


Q ss_pred             eeeCC
Q 021657          305 CTSKP  309 (309)
Q Consensus       305 ~~~~P  309 (309)
                      ++++|
T Consensus       297 ia~~~  301 (329)
T 3fvz_A          297 IVASE  301 (329)
T ss_dssp             EEECT
T ss_pred             EEECC
Confidence            88775

>1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens}

Probab=99.81  E-value=4.9e-19  Score=155.66  Aligned_cols=239  Identities=13%  Similarity=0.132  Sum_probs=149.8

Q ss_pred             eEEEEECCCCCEEEEecC---------CCcEEEEeCCcccc---ccccCCccccccCCCCceeecCCCCCCCCcccCCCC
Q 021657           12 EFALAMCPTEPYVLSGGK---------DKSVVLWSIQDHIT---SSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGP   79 (309)
Q Consensus        12 V~~~~~~~~~~~l~t~~~---------dg~i~vwd~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   79 (309)
                      |.+++|||||++|++++.         |+.|++||++++..   ............+..+....+.   .+..+++|+..
T Consensus        62 ~~~~~~SpDg~~la~~~~~~~~~~~s~~~~i~~~d~~~g~~~~~~~l~~~~~~~~~SPDG~~la~~---~~~~i~~~~~~  138 (719)
T 1z68_A           62 ASNYGLSPDRQFVYLESDYSKLWRYSYTATYYIYDLSNGEFVRGNELPRPIQYLCWSPVGSKLAYV---YQNNIYLKQRP  138 (719)
T ss_dssp             CSEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEETTTTEECCSSCCCSSBCCEEECSSTTCEEEE---ETTEEEEESST
T ss_pred             eeeEEECCCCCeEEEEecCceeEEeecceEEEEEECCCCccccceecCcccccceECCCCCEEEEE---ECCeEEEEeCC
Confidence            789999999999998876         79999999988754   2111111222222222222221   24578888887


Q ss_pred             CcCccccc-ccccCCe-----------------EEEEEecCCCcEEEEEcCCC---------------------------
Q 021657           80 SVGPRGIY-NGHEDTV-----------------EDVTFCPSSAQEFCSVGDDS---------------------------  114 (309)
Q Consensus        80 ~~~~~~~~-~~~~~~v-----------------~~~~~~~~~~~~l~s~~~dg---------------------------  114 (309)
                      +.+..... .++...|                 .++.|+||| +.|+.++.|.                           
T Consensus       139 ~g~~~~l~~~~~~~~v~~g~~~~v~~ee~~~~~~~~~wSPDG-~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~~yp~~  217 (719)
T 1z68_A          139 GDPPFQITFNGRENKIFNGIPDWVYEEEMLATKYALWWSPNG-KFLAYAEFNDTDIPVIAYSYYGDEQYPRTINIPYPKA  217 (719)
T ss_dssp             TSCCEECCCCCBTTTEEESSCCHHHHHHTTCSSCCEEECTTS-SEEEEEEEECTTSCEEEEEECCSSSSCEEEEEECCBT
T ss_pred             CCCcEEEecCCCcCCeEcccccceeeeecccCcccEEECCCC-CEEEEEEECCCCCceEEeeccCCCCCccceeecCCCC
Confidence            76654332 2232222                 489999999 6777776542                           


Q ss_pred             -------eEEEEEcCCCCcc-eEE-----EeeccCCceeEEEeccCCCCeEEEEcCC----CcEEEEe----cCCCCCCC
Q 021657          115 -------CLILWDARVGTSP-VIK-----VEKAHDADLHCVDWNPLDDNLILTGSAD----NSVRMFD----RRNLTSNG  173 (309)
Q Consensus       115 -------~i~iwd~~~~~~~-~~~-----~~~~~~~~v~~~~~~~~~~~~l~~~~~d----g~i~i~d----~~~~~~~~  173 (309)
                             .|++||+.+++.. ...     .+..|...+..++|+| +++++++....    ..|.+||    ..+     
T Consensus       218 g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sp-D~~~~~~~~~~~~~~~~l~~~d~~~~~~~-----  291 (719)
T 1z68_A          218 GAKNPVVRIFIIDTTYPAYVGPQEVPVPAMIASSDYYFSWLTWVT-DERVCLQWLKRVQNVSVLSICDFREDWQT-----  291 (719)
T ss_dssp             TSCCCEEEEEEEESSCHHHHCCEECCCCHHHHTSCEEEEEEEESS-SSEEEEEEEESSTTEEEEEEEEECSSSSS-----
T ss_pred             CCCCCeeEEEEEECCCCCccceeEccCCccCCCCcceEEEeEEeC-CCeEEEEEeccccCeEEEEEEcccCCCCC-----
Confidence                   7889999876521 011     1235777899999999 77777664332    2488899    666     


Q ss_pred             CCCceeee----ccCCCCee-----EEEEecCCCcEEE-EecCCCc--EEEEeCCcccccccCCCCCcCCCCceeeeecC
Q 021657          174 VGSPINKF----EGHSAAVL-----CVQWSPDKSSVFG-SSAEDGL--LNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAG  241 (309)
Q Consensus       174 ~~~~~~~~----~~~~~~v~-----~~~~~~~~~~l~~-~~~~dg~--i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~  241 (309)
                       ++....+    ..+...+.     .++|+|||+.++. +...+|.  |.+||+.. ++               ...+..
T Consensus       292 -g~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~g~~~l~~~~~~~-~~---------------~~~lt~  354 (719)
T 1z68_A          292 -WDCPKTQEHIEESRTGWAGGFFVSTPVFSYDAISYYKIFSDKDGYKHIHYIKDTV-EN---------------AIQITS  354 (719)
T ss_dssp             -EECCGGGEEEEECSSSCSSSSSCCCCEECTTSSCEEEEEECTTSCEEEEEESSCS-TT---------------CEECSC
T ss_pred             -CceEEEEecccccCCceEccccCCccEECCCCCeEEEEEEccCCceEEEEEECCC-Cc---------------eEeccc
Confidence             4444444    35666666     7899999997554 3545664  55566554 11               122334


Q ss_pred             CCcceeeEEEccCCCeEEEEecCCCCCCCCCCeEEEEEcc
Q 021657          242 HRDKVVDFHWNASDPWTVVSVSDDCDSTGGGGTLQIWRMS  281 (309)
Q Consensus       242 ~~~~v~~~~~~~~~~~~~~s~s~d~~s~~~dg~v~vw~~~  281 (309)
                      +...+..+.+. ++..++++++..   ...++..++|.+.
T Consensus       355 ~~~~v~~~~~~-d~~~i~~~~~~~---~~~~~~~~l~~~~  390 (719)
T 1z68_A          355 GKWEAINIFRV-TQDSLFYSSNEF---EEYPGRRNIYRIS  390 (719)
T ss_dssp             SSSCEEEEEEE-CSSEEEEEESCG---GGCTTCBEEEEEE
T ss_pred             CceEEEEEEEE-eCCEEEEEEecC---CCCCceEEEEEEe
Confidence            45557777777 788888766540   0123789999986

>4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ...

Probab=99.80  E-value=3e-18  Score=150.96  Aligned_cols=218  Identities=12%  Similarity=0.190  Sum_probs=133.5

Q ss_pred             ceEEEEECCCCCEEEEecCCCcEEEEeCCccccccccCCccccccCCCCceeecCCCCCCCCcccCCCCCcCcccccccc
Q 021657           11 AEFALAMCPTEPYVLSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGH   90 (309)
Q Consensus        11 ~V~~~~~~~~~~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   90 (309)
                      ...++.|+|||++++++  ||+|++||+.++........                                   ..+..+
T Consensus        18 ~~~~~~w~~dg~~~~~~--~~~i~~~~~~~~~~~~~~~~-----------------------------------~~~~~~   60 (740)
T 4a5s_A           18 KLYSLRWISDHEYLYKQ--ENNILVFNAEYGNSSVFLEN-----------------------------------STFDEF   60 (740)
T ss_dssp             CCCCEEECSSSEEEEEE--TTEEEEEETTTCCEEEEECT-----------------------------------TTTTTC
T ss_pred             cccccEECCCCcEEEEc--CCcEEEEECCCCceEEEEec-----------------------------------hhhhhh
Confidence            35688999999999887  99999999986532111100                                   000112


Q ss_pred             cCCeEEEEEecCCCcEEEEEcCC---------CeEEEEEcCCCCcceEEEeeccCCceeEEEeccCCCCeEEEEcCCCcE
Q 021657           91 EDTVEDVTFCPSSAQEFCSVGDD---------SCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSV  161 (309)
Q Consensus        91 ~~~v~~~~~~~~~~~~l~s~~~d---------g~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i  161 (309)
                      .....++.|+||| +.|+.++.+         +.+.+||+.+++   ...+..+...+...+|+| +|+.|+.+ .++.|
T Consensus        61 ~~~~~~~~~Spdg-~~l~~~~~~~~~~r~~~~~~~~~~d~~~~~---~~~l~~~~~~~~~~~~SP-dG~~la~~-~~~~i  134 (740)
T 4a5s_A           61 GHSINDYSISPDG-QFILLEYNYVKQWRHSYTASYDIYDLNKRQ---LITEERIPNNTQWVTWSP-VGHKLAYV-WNNDI  134 (740)
T ss_dssp             CSCCCEEEECTTS-SEEEEEEEEEECSSSCEEEEEEEEETTTTE---ECCSSCCCTTEEEEEECS-STTCEEEE-ETTEE
T ss_pred             cccccceEECCCC-CEEEEEECCeeeEEEccceEEEEEECCCCc---EEEcccCCCcceeeEECC-CCCEEEEE-ECCeE
Confidence            2233568999999 677777765         567799998876   334556778899999999 99999888 57899


Q ss_pred             EEEecCCCCCCCCCCcee-eeccCCCCe-----------------eEEEEecCCCcEEEEecCCCcEEEEeCCccccccc
Q 021657          162 RMFDRRNLTSNGVGSPIN-KFEGHSAAV-----------------LCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVE  223 (309)
Q Consensus       162 ~i~d~~~~~~~~~~~~~~-~~~~~~~~v-----------------~~~~~~~~~~~l~~~~~~dg~i~iwd~~~~~~~~~  223 (309)
                      ++||+.+      +...+ +..++...+                 ..+.|+|||++|+.....++.+.+|++........
T Consensus       135 ~~~~~~~------~~~~~lt~~g~~~~~~~g~~~~v~~ee~~~~~~~~~wSpDg~~la~~~~d~~~v~~~~~~~~~~~~~  208 (740)
T 4a5s_A          135 YVKIEPN------LPSYRITWTGKEDIIYNGITDWVYEEEVFSAYSALWWSPNGTFLAYAQFNDTEVPLIEYSFYSDESL  208 (740)
T ss_dssp             EEESSTT------SCCEECCSCCBTTTEEESBCCHHHHHHTSSSSBCEEECTTSSEEEEEEEECTTCCEEEEEECCSTTC
T ss_pred             EEEECCC------CceEEEcCCCCccceecCcccccccchhcCCCcceEECCCCCEEEEEEEcccCCceEEEEeecCCCC
Confidence            9999987      44332 122222222                 35899999997543333334355554422111000


Q ss_pred             CCC--------CC--c---------CCCC---c---eeeeec------CCCcceeeEEEccCCCeEEEEecCCCCCCCCC
Q 021657          224 QGP--------RT--T---------NYPA---G---LFFQHA------GHRDKVVDFHWNASDPWTVVSVSDDCDSTGGG  272 (309)
Q Consensus       224 ~~~--------~~--~---------~~~~---~---~~~~~~------~~~~~v~~~~~~~~~~~~~~s~s~d~~s~~~d  272 (309)
                      ..+        ..  .         ....   .   ....+.      +|...+..++|+|++..++....    .++.+
T Consensus       209 ~~~~~~~~~yp~~G~~~~~~~l~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~wspdg~~~~~~~~----r~~~~  284 (740)
T 4a5s_A          209 QYPKTVRVPYPKAGAVNPTVKFFVVNTDSLSSVTNATSIQITAPASMLIGDHYLCDVTWATQERISLQWLR----RIQNY  284 (740)
T ss_dssp             SSCEEEEEECCBTTSCCCEEEEEEEETTSCCSSSCCCEEEECCCHHHHTSCEEEEEEEEEETTEEEEEEEE----SSTTE
T ss_pred             CCCcceeecCCCCcCcCCeeEEEEEECCCCCCCCcceEEEecCCccCCCCCeEEEEEEEeCCCeEEEEEeC----CCCCE
Confidence            000        00  0         0000   0   111111      37778999999999875444332    23445


Q ss_pred             CeEEEEEcc
Q 021657          273 GTLQIWRMS  281 (309)
Q Consensus       273 g~v~vw~~~  281 (309)
                      ..|++||+.
T Consensus       285 ~~i~~~d~~  293 (740)
T 4a5s_A          285 SVMDICDYD  293 (740)
T ss_dssp             EEEEEEEEE
T ss_pred             EEEEEEECC
Confidence            789999998

>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A

Probab=99.79  E-value=1.3e-18  Score=149.38  Aligned_cols=233  Identities=11%  Similarity=0.046  Sum_probs=152.4

Q ss_pred             ccCCCCCcceEEEEECCCCCEEEEecC---CCcEEEEeCCc----cccccccC-Ccc--ccccCCCCceeecCCCCCCCC
Q 021657            3 ILTGHQDNAEFALAMCPTEPYVLSGGK---DKSVVLWSIQD----HITSSATD-PAT--AKSAGSSGSIIKQSPKPGDGN   72 (309)
Q Consensus         3 ~l~~H~~~~V~~~~~~~~~~~l~t~~~---dg~i~vwd~~~----~~~~~~~~-~~~--~~~~~~~~~~~~~~~~~~~~~   72 (309)
                      .+..|....|..++|+|| +++++++.   +...++|.+..    ........ ...  ...+++.....  ... ....
T Consensus        58 ~lt~~~~~~~~~~~~spd-~~l~~~~~~~g~~~~~l~~~~~~~~g~~~~l~~~~~~~~~~~s~dg~~~~~--~s~-~~~~  133 (582)
T 3o4h_A           58 KLNREPINSVLDPHYGVG-RVILVRDVSKGAEQHALFKVNTSRPGEEQRLEAVKPMRILSGVDTGEAVVF--TGA-TEDR  133 (582)
T ss_dssp             ECCSSCCSEECEECTTCS-EEEEEEECSTTSCCEEEEEEETTSTTCCEECTTSCSBEEEEEEECSSCEEE--EEE-CSSC
T ss_pred             eeecccccccccccCCCC-eEEEEeccCCCCcceEEEEEeccCCCccccccCCCCceeeeeCCCCCeEEE--Eec-CCCC
Confidence            455565337899999999 77777765   56666765543    22111111 111  11222222111  111 1233


Q ss_pred             cccCCCCCcCcccccccccCCeEEEEEecCCCcEEEEEcCC----CeEEEEEcCCCCcceEEEeeccCCceeEEEeccCC
Q 021657           73 DKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQEFCSVGDD----SCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLD  148 (309)
Q Consensus        73 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d----g~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~  148 (309)
                      ..+|+..+.+...... +..  .++.|+|+| +.+++++.+    +.|++||+.+++   ...+..|...+..++|+| +
T Consensus       134 ~~l~d~~~g~~~~l~~-~~~--~~~~~spDG-~~la~~~~~~~~~~~i~~~d~~~g~---~~~l~~~~~~~~~~~~Sp-D  205 (582)
T 3o4h_A          134 VALYALDGGGLRELAR-LPG--FGFVSDIRG-DLIAGLGFFGGGRVSLFTSNLSSGG---LRVFDSGEGSFSSASISP-G  205 (582)
T ss_dssp             EEEEEEETTEEEEEEE-ESS--CEEEEEEET-TEEEEEEEEETTEEEEEEEETTTCC---CEEECCSSCEEEEEEECT-T
T ss_pred             ceEEEccCCcEEEeec-CCC--ceEEECCCC-CEEEEEEEcCCCCeEEEEEcCCCCC---ceEeecCCCccccceECC-C
Confidence            3477776665544333 333  789999999 778877766    789999998877   235567888899999999 9


Q ss_pred             CCeEEEEcCCC--cEEEEecCCCCCCCCCCceeeeccCCCCeeEEE--------EecCCCcEEEEecCCCcEEEEeCCcc
Q 021657          149 DNLILTGSADN--SVRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQ--------WSPDKSSVFGSSAEDGLLNIWDYEKV  218 (309)
Q Consensus       149 ~~~l~~~~~dg--~i~i~d~~~~~~~~~~~~~~~~~~~~~~v~~~~--------~~~~~~~l~~~~~~dg~i~iwd~~~~  218 (309)
                      ++.|+++..++  .|++||+.+      ++.. .+..+...+..++        |+||| .++++++.|+.+++|++   
T Consensus       206 G~~l~~~~~~~~~~i~~~d~~~------~~~~-~~~~~~~~~~~~~~~~~~~~~~spdg-~~~~~~~~~g~~~l~~~---  274 (582)
T 3o4h_A          206 MKVTAGLETAREARLVTVDPRD------GSVE-DLELPSKDFSSYRPTAITWLGYLPDG-RLAVVARREGRSAVFID---  274 (582)
T ss_dssp             SCEEEEEECSSCEEEEEECTTT------CCEE-ECCCSCSHHHHHCCSEEEEEEECTTS-CEEEEEEETTEEEEEET---
T ss_pred             CCEEEEccCCCeeEEEEEcCCC------CcEE-EccCCCcChhhhhhccccceeEcCCC-cEEEEEEcCCcEEEEEE---
Confidence            99999888888  899999987      6666 6666776677777        99999 57889999999999999   


Q ss_pred             cccccCCCCCcCCCCceeeeecCCCcceeeEEEccCCCeEEEEecCCCCCCCCCCeEEEEEcc
Q 021657          219 GKKVEQGPRTTNYPAGLFFQHAGHRDKVVDFHWNASDPWTVVSVSDDCDSTGGGGTLQIWRMS  281 (309)
Q Consensus       219 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~s~d~~s~~~dg~v~vw~~~  281 (309)
                      ++...                 .....+.+++|+ ++..+ ++++.+    ..-..+.+|+..
T Consensus       275 g~~~~-----------------~~~~~v~~~~~s-dg~~l-~~~s~~----~~p~~l~~~d~~  314 (582)
T 3o4h_A          275 GERVE-----------------APQGNHGRVVLW-RGKLV-TSHTSL----STPPRIVSLPSG  314 (582)
T ss_dssp             TEEEC-----------------CCSSEEEEEEEE-TTEEE-EEEEET----TEEEEEEEETTC
T ss_pred             CCeec-----------------cCCCceEEEEec-CCEEE-EEEcCC----CCCCeEEEEcCC
Confidence            22110                 223568899999 66554 544433    112346666654

>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1

Probab=99.78  E-value=2.9e-16  Score=122.49  Aligned_cols=235  Identities=12%  Similarity=0.156  Sum_probs=154.6

Q ss_pred             CCCCcceEEEEECCCCCEEEEecCCCcEEEEeCCccccccccC---------Ccccccc-CCCCceeecCCCCCCCCccc
Q 021657            6 GHQDNAEFALAMCPTEPYVLSGGKDKSVVLWSIQDHITSSATD---------PATAKSA-GSSGSIIKQSPKPGDGNDKA   75 (309)
Q Consensus         6 ~H~~~~V~~~~~~~~~~~l~t~~~dg~i~vwd~~~~~~~~~~~---------~~~~~~~-~~~~~~~~~~~~~~~~~~~~   75 (309)
                      +|-. .+.++++++++.++++...++.|++||.+.........         ....... .....+... .......+..
T Consensus        27 g~~~-~p~~v~~~~~g~l~v~~~~~~~i~~~d~~g~~~~~~~~~~~~~~~~~~p~~i~~~~~~g~l~v~-~~~~~~~i~~  104 (286)
T 1q7f_A           27 GQFT-EPSGVAVNAQNDIIVADTNNHRIQIFDKEGRFKFQFGECGKRDSQLLYPNRVAVVRNSGDIIVT-ERSPTHQIQI  104 (286)
T ss_dssp             TCBS-CEEEEEECTTCCEEEEEGGGTEEEEECTTSCEEEEECCBSSSTTCBSSEEEEEEETTTTEEEEE-ECGGGCEEEE
T ss_pred             CccC-CCceEEECCCCCEEEEECCCCEEEEECCCCcEEEEecccCCCcccccCceEEEEEcCCCeEEEE-cCCCCCEEEE
Confidence            4555 57899999999999998999999999987432111100         0000111 111111111 1112455666


Q ss_pred             CCCCCcCcccccc-cccCCeEEEEEecCCCcEEEEEcCCCeEEEEEcCCCCcceEEEee--ccCCceeEEEeccCCCCeE
Q 021657           76 ADGPSVGPRGIYN-GHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPVIKVEK--AHDADLHCVDWNPLDDNLI  152 (309)
Q Consensus        76 ~~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~--~~~~~v~~~~~~~~~~~~l  152 (309)
                      ++ .+.+.+..+. .+...+.++++++++ +++++...++.|.+||.. ++  ....+.  .+...+..++++| +++++
T Consensus       105 ~d-~~g~~~~~~~~~~~~~~~~i~~~~~g-~l~v~~~~~~~i~~~~~~-g~--~~~~~~~~~~~~~p~~i~~~~-~g~l~  178 (286)
T 1q7f_A          105 YN-QYGQFVRKFGATILQHPRGVTVDNKG-RIIVVECKVMRVIIFDQN-GN--VLHKFGCSKHLEFPNGVVVND-KQEIF  178 (286)
T ss_dssp             EC-TTSCEEEEECTTTCSCEEEEEECTTS-CEEEEETTTTEEEEECTT-SC--EEEEEECTTTCSSEEEEEECS-SSEEE
T ss_pred             EC-CCCcEEEEecCccCCCceEEEEeCCC-CEEEEECCCCEEEEEcCC-CC--EEEEeCCCCccCCcEEEEECC-CCCEE
Confidence            66 3444444342 234578999999998 788888888999999964 44  333332  3445689999999 88888


Q ss_pred             EEEcCCCcEEEEecCCCCCCCCCCceeeeccC--CCCeeEEEEecCCCcEEEEecCCC-cEEEEeCCcccccccCCCCCc
Q 021657          153 LTGSADNSVRMFDRRNLTSNGVGSPINKFEGH--SAAVLCVQWSPDKSSVFGSSAEDG-LLNIWDYEKVGKKVEQGPRTT  229 (309)
Q Consensus       153 ~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~--~~~v~~~~~~~~~~~l~~~~~~dg-~i~iwd~~~~~~~~~~~~~~~  229 (309)
                      ++...++.|++||..       ++.+..+...  ...+..++++++|. ++++...++ .|.+||...  +         
T Consensus       179 v~~~~~~~i~~~~~~-------g~~~~~~~~~g~~~~p~~i~~d~~G~-l~v~~~~~~~~i~~~~~~g--~---------  239 (286)
T 1q7f_A          179 ISDNRAHCVKVFNYE-------GQYLRQIGGEGITNYPIGVGINSNGE-ILIADNHNNFNLTIFTQDG--Q---------  239 (286)
T ss_dssp             EEEGGGTEEEEEETT-------CCEEEEESCTTTSCSEEEEEECTTCC-EEEEECSSSCEEEEECTTS--C---------
T ss_pred             EEECCCCEEEEEcCC-------CCEEEEEccCCccCCCcEEEECCCCC-EEEEeCCCCEEEEEECCCC--C---------
Confidence            888889999999974       5556666433  35688999999997 566777675 999999643  1         


Q ss_pred             CCCCceeeeecCC--CcceeeEEEccCCCeEEEEecCCCCCCCCCCeEEEEEcc
Q 021657          230 NYPAGLFFQHAGH--RDKVVDFHWNASDPWTVVSVSDDCDSTGGGGTLQIWRMS  281 (309)
Q Consensus       230 ~~~~~~~~~~~~~--~~~v~~~~~~~~~~~~~~s~s~d~~s~~~dg~v~vw~~~  281 (309)
                           .+..+..+  ...+.+++++|++. ++++. .|       +.|++|++.
T Consensus       240 -----~~~~~~~~~~~~~~~~i~~~~~g~-l~vs~-~~-------~~v~v~~~~  279 (286)
T 1q7f_A          240 -----LISALESKVKHAQCFDVALMDDGS-VVLAS-KD-------YRLYIYRYV  279 (286)
T ss_dssp             -----EEEEEEESSCCSCEEEEEEETTTE-EEEEE-TT-------TEEEEEECS
T ss_pred             -----EEEEEcccCCCCcceeEEECCCCc-EEEEC-CC-------CeEEEEEcc
Confidence                 22222222  23477999999875 55542 34       899999987

>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp}

Probab=99.77  E-value=2.8e-17  Score=133.93  Aligned_cols=210  Identities=13%  Similarity=0.051  Sum_probs=137.5

Q ss_pred             cccCCCCCcceEE-----EEECCCCCEEEEecC-CCc--EEEEeCCccccccccCCccccccCCCCceeecCCCCCCCCc
Q 021657            2 EILTGHQDNAEFA-----LAMCPTEPYVLSGGK-DKS--VVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGND   73 (309)
Q Consensus         2 ~~l~~H~~~~V~~-----~~~~~~~~~l~t~~~-dg~--i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   73 (309)
                      +.|..|.. .+..     .+|+|||++|+.++. +|.  |.+||+.++.                               
T Consensus        24 ~~lt~~~~-~~~~~~~~~~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g~-------------------------------   71 (388)
T 3pe7_A           24 TRLTPPDV-TCHRNYFYQKCFTRDGSKLLFGGAFDGPWNYYLLDLNTQV-------------------------------   71 (388)
T ss_dssp             EECSCTTS-CEECCCTTSCCBCTTSCEEEEEECTTSSCEEEEEETTTCE-------------------------------
T ss_pred             EEecCCcc-cccchhhcCccCCCCCCEEEEEEcCCCCceEEEEeCCCCc-------------------------------
Confidence            34566665 4455     789999999998877 674  7777876432                               


Q ss_pred             ccCCCCCcCcccccccccCCeEEEEEecCCCcEEEEEcCCCeEEEEEcCCCCcceEEEeeccCCceeEEE--eccCCCCe
Q 021657           74 KAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVD--WNPLDDNL  151 (309)
Q Consensus        74 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~--~~~~~~~~  151 (309)
                               ......++...+..+.|+|++ +.|+.++.++.|++||+.+++  .......+...+....  ++| ++..
T Consensus        72 ---------~~~lt~~~~~~~~~~~~spdg-~~l~~~~~~~~l~~~d~~~g~--~~~~~~~~~~~~~~~~~~~~~-dg~~  138 (388)
T 3pe7_A           72 ---------ATQLTEGRGDNTFGGFLSPDD-DALFYVKDGRNLMRVDLATLE--ENVVYQVPAEWVGYGTWVANS-DCTK  138 (388)
T ss_dssp             ---------EEECCCSSCBCSSSCEECTTS-SEEEEEETTTEEEEEETTTCC--EEEEEECCTTEEEEEEEEECT-TSSE
T ss_pred             ---------eEEeeeCCCCCccceEEcCCC-CEEEEEeCCCeEEEEECCCCc--ceeeeechhhcccccceeECC-CCCe
Confidence                     222233344444467899999 778888888999999999887  3444444455444444  478 8887


Q ss_pred             EEEE----------------------cCCCcEEEEecCCCCCCCCCCceeeeccCCCCeeEEEEec-CCCcEEEEecC--
Q 021657          152 ILTG----------------------SADNSVRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWSP-DKSSVFGSSAE--  206 (309)
Q Consensus       152 l~~~----------------------~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~~--  206 (309)
                      ++..                      ..+..|.+||+.+      ++. ..+..+...+..++|+| +|+.++.+...  
T Consensus       139 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~------g~~-~~l~~~~~~~~~~~~sp~dg~~l~~~~~~~~  211 (388)
T 3pe7_A          139 LVGIEIRREDWVPLTDWKKFHEFYFTKPCCRLMRVDLKT------GES-TVILQENQWLGHPIYRPYDDSTVAFCHEGPH  211 (388)
T ss_dssp             EEEEEEEGGGCCCCCSHHHHHHHGGGCCCEEEEEEETTT------CCE-EEEEEESSCEEEEEEETTEEEEEEEEECSCT
T ss_pred             eccccccCcccccccccchhhhhhccCCcceEEEEECCC------Cce-EEeecCCccccccEECCCCCCEEEEEEecCC
Confidence            7642                      2346899999987      543 34444566789999999 99875433332  


Q ss_pred             ---CCcEEEEeCCcccccccCCCCCcCCCCceeeeecCCC--cceeeEEEccCCCeEEEEecCCCCCCCCCCeEEEEEcc
Q 021657          207 ---DGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHR--DKVVDFHWNASDPWTVVSVSDDCDSTGGGGTLQIWRMS  281 (309)
Q Consensus       207 ---dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~v~~~~~~~~~~~~~~s~s~d~~s~~~dg~v~vw~~~  281 (309)
                         ...|.++|+... .               ...+..+.  ..+..+.|+|++..++.....   .+..+..|++||+.
T Consensus       212 ~~~~~~l~~~d~~~~-~---------------~~~l~~~~~~~~~~~~~~spdg~~l~~~~~~---~~~~~~~l~~~d~~  272 (388)
T 3pe7_A          212 DLVDARMWLINEDGT-N---------------MRKVKTHAEGESCTHEFWVPDGSALVYVSYL---KGSPDRFIYSADPE  272 (388)
T ss_dssp             TTSSCSEEEEETTSC-C---------------CEESCCCCTTEEEEEEEECTTSSCEEEEEEE---TTCCCEEEEEECTT
T ss_pred             CCCcceEEEEeCCCC-c---------------eEEeeeCCCCcccccceECCCCCEEEEEecC---CCCCcceEEEEecC
Confidence               336777776541 1               11122222  357789999999876554332   23334569999998


Q ss_pred             c
Q 021657          282 D  282 (309)
Q Consensus       282 ~  282 (309)
                      .
T Consensus       273 ~  273 (388)
T 3pe7_A          273 T  273 (388)
T ss_dssp             T
T ss_pred             C
Confidence            3

>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A

Probab=99.76  E-value=4.6e-17  Score=141.85  Aligned_cols=267  Identities=12%  Similarity=0.072  Sum_probs=159.5

Q ss_pred             ccCCCCCcceEEEEECCCCCEEEEe--cCCCcEEEEeCCcc-c-cccccCCcc-----------cc-c---cCCCCceee
Q 021657            3 ILTGHQDNAEFALAMCPTEPYVLSG--GKDKSVVLWSIQDH-I-TSSATDPAT-----------AK-S---AGSSGSIIK   63 (309)
Q Consensus         3 ~l~~H~~~~V~~~~~~~~~~~l~t~--~~dg~i~vwd~~~~-~-~~~~~~~~~-----------~~-~---~~~~~~~~~   63 (309)
                      .+.+|.. .|..++|++++-++++.  +.++...||....+ . .........           .. .   +++...+..
T Consensus        18 ~~~~~~~-~~~~~~~s~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~SPDg~~~la~   96 (662)
T 3azo_A           18 LVASRSG-RPACVGAVGDEVWWVAPRPAEAGRATLVRRRADGAEESALPAPWNVRNRVFEYSGFPWAGVPRPAGGPLLVF   96 (662)
T ss_dssp             HHHHTCS-CCEEEEEETTEEEEEEEETTTTTEEEEEEECTTSCEEESSCTTCCBCCCGGGTCCCCEEEECCSSSSCEEEE
T ss_pred             HHhhcCC-ccceeEEcCCeEEEEecCcccCCcEEEEEECCCCCcceeCCCCccccccccccCCccceeeeecCCCeEEEE
Confidence            4667888 79999999887777777  67899999995332 1 111111111           11 1   112110222


Q ss_pred             cCCCCCCCCcccCCCC--CcCccccccc-----ccCCeEEEEEecCCCcEEEEEcCC----------CeEEEEEcCC---
Q 021657           64 QSPKPGDGNDKAADGP--SVGPRGIYNG-----HEDTVEDVTFCPSSAQEFCSVGDD----------SCLILWDARV---  123 (309)
Q Consensus        64 ~~~~~~~~~~~~~~~~--~~~~~~~~~~-----~~~~v~~~~~~~~~~~~l~s~~~d----------g~i~iwd~~~---  123 (309)
                      ....  ...+..++..  .......+..     |...+..++|+|+| +.|+.++.+          ..|++||+.+   
T Consensus        97 ~~~~--~~~l~~~~~~~~g~~~~~~l~~~~~~~~~~~~~~~~~spDg-~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~~  173 (662)
T 3azo_A           97 THFG--DQRLYAFEPDAPGGAVPRPLTPVSAVGGGLRWADPVLLPER-GEVWCMAEEFTGEGPSDVRRFLAAVPLDGSAA  173 (662)
T ss_dssp             EBTT--TCCEEEECTTSTTCCCCEECSCCCCSTTCEEEEEEEEETTT-TEEEEEEEEECSSSTTCEEEEEEEEETTSTTT
T ss_pred             EECC--CCeEEEEcCCCCCCCCCEeccCCccCCCCccccCcEECCCC-CEEEEEEecccCCCCCCceeEEEEEECCCCcc
Confidence            2211  4455555554  2023334444     66788999999999 667777766          5899999987   


Q ss_pred             ---CCcceEEEee-ccCCceeEEEeccCCCCeEEEEcCC--------CcEEEEecC-CCCCCCCC---CceeeeccCCCC
Q 021657          124 ---GTSPVIKVEK-AHDADLHCVDWNPLDDNLILTGSAD--------NSVRMFDRR-NLTSNGVG---SPINKFEGHSAA  187 (309)
Q Consensus       124 ---~~~~~~~~~~-~~~~~v~~~~~~~~~~~~l~~~~~d--------g~i~i~d~~-~~~~~~~~---~~~~~~~~~~~~  187 (309)
                         ++   ...+. .+...+..++|+| ++++|+.++.+        ..|++||+. +      +   +.......+...
T Consensus       174 ~~~~~---~~~l~~~~~~~~~~~~~Sp-DG~~la~~~~~~~~~~~~~~~i~~~d~~~~------g~~~~~~~l~~~~~~~  243 (662)
T 3azo_A          174 ADRSA---VRELSDDAHRFVTGPRLSP-DGRQAVWLAWDHPRMPWEGTELKTARVTED------GRFADTRTLLGGPEEA  243 (662)
T ss_dssp             TCGGG---SEESSCSCSSEECCCEECT-TSSEEEEEEECTTCCTTTCEEEEEEEECTT------SCEEEEEEEEEETTBC
T ss_pred             ccCCc---eeEEEecCCCcccCceECC-CCCEEEEEECCCCCCCCCCcEEEEEEECCC------CcccccEEeCCCCCce
Confidence               44   23444 5567788999999 99999877755        379999998 4      4   333333445678


Q ss_pred             eeEEEEecCCCcEEEEecCCC--cEEEEeCCcccccccCCCCCcCCCCceeeeecCCCcceeeEEEccCCCeEEEEecCC
Q 021657          188 VLCVQWSPDKSSVFGSSAEDG--LLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKVVDFHWNASDPWTVVSVSDD  265 (309)
Q Consensus       188 v~~~~~~~~~~~l~~~~~~dg--~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~s~d  265 (309)
                      +..++|+|||+ +++++..++  .|.+||+.. ++.........    . . ....-...+..++|+|++..++      
T Consensus       244 ~~~~~~spdg~-l~~~~~~~~~~~l~~~~~~~-~~~~~l~~~~~----~-~-~~p~w~~~~~~~~~~~~~~~~~------  309 (662)
T 3azo_A          244 IAQAEWAPDGS-LIVATDRTGWWNLHRVDPAT-GAATQLCRREE----E-F-AGPLWTPGMRWFAPLANGLIAV------  309 (662)
T ss_dssp             EEEEEECTTSC-EEEEECTTSSCEEEEECTTT-CCEEESSCCSS----B-S-SCCCCSTTCCSEEECTTSCEEE------
T ss_pred             EcceEECCCCe-EEEEECCCCCeEEEEEECCC-Cceeecccccc----c-c-cCccccccCceEeEeCCCEEEE------
Confidence            99999999999 677888888  455555533 22111000000    0 0 0000001156788999777554      


Q ss_pred             CCCCCCCCeEEEEEccccccCChhhHhHhhhcccceEEEe
Q 021657          266 CDSTGGGGTLQIWRMSDLIYRPQDEVLAELEKFKAHVISC  305 (309)
Q Consensus       266 ~~s~~~dg~v~vw~~~~~~~~~~~~~~~~~~~h~~~v~~~  305 (309)
                        ++.. +.++||.+..     ....+..+..|.+.+..+
T Consensus       310 --~~~~-~~~~l~~~d~-----~~~~~~~l~~~~~~~~~~  341 (662)
T 3azo_A          310 --VHGK-GAAVLGILDP-----ESGELVDAAGPWTEWAAT  341 (662)
T ss_dssp             --EEBS-SSCEEEEEET-----TTTEEEECCSSCCEEEEE
T ss_pred             --EEEc-CccEEEEEEC-----CCCcEEEecCCCCeEEEE
Confidence              3334 6888885542     122355666666666655

>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*

Probab=99.76  E-value=2.1e-17  Score=131.87  Aligned_cols=138  Identities=15%  Similarity=0.184  Sum_probs=104.4

Q ss_pred             CCCCCcccCCCCCcCcccccccccC--CeEEEEEecCCCcEEEEEcCCCeEEEEEcCCCCcceEEEeec-c----CCcee
Q 021657           68 PGDGNDKAADGPSVGPRGIYNGHED--TVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPVIKVEKA-H----DADLH  140 (309)
Q Consensus        68 ~~~~~~~~~~~~~~~~~~~~~~~~~--~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~-~----~~~v~  140 (309)
                      ..++.+.+|+..+.+.+..+.....  .+..++|+|++..+++++..++.|.+||+.+++  ....+.. +    ...+.
T Consensus         8 ~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~--~~~~~~~~~~~~~~~~~~   85 (337)
T 1pby_B            8 ARPDKLVVIDTEKMAVDKVITIADAGPTPMVPMVAPGGRIAYATVNKSESLVKIDLVTGE--TLGRIDLSTPEERVKSLF   85 (337)
T ss_dssp             ETTTEEEEEETTTTEEEEEEECTTCTTCCCCEEECTTSSEEEEEETTTTEEEEEETTTCC--EEEEEECCBTTEEEECTT
T ss_pred             CCCCeEEEEECCCCcEEEEEEcCCCCCCccceEEcCCCCEEEEEeCCCCeEEEEECCCCC--eEeeEEcCCccccccccc
Confidence            3456778888888777666653221  478899999996667788888999999998877  4433332 2    22678


Q ss_pred             EEEeccCCCCeEEEEc------------CCCcEEEEecCCCCCCCCCCceeeeccCCCCeeEEEEecCCCcEEEEecCCC
Q 021657          141 CVDWNPLDDNLILTGS------------ADNSVRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAEDG  208 (309)
Q Consensus       141 ~~~~~~~~~~~l~~~~------------~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~dg  208 (309)
                      .++|+| ++++++++.            .++.|.+||+.+      ++.+..+.. ...+..++|+|++++++ ++  ++
T Consensus        86 ~~~~s~-dg~~l~~~~~~~~~~~~~~~~~~~~i~v~d~~~------~~~~~~~~~-~~~~~~~~~s~dg~~l~-~~--~~  154 (337)
T 1pby_B           86 GAALSP-DGKTLAIYESPVRLELTHFEVQPTRVALYDAET------LSRRKAFEA-PRQITMLAWARDGSKLY-GL--GR  154 (337)
T ss_dssp             CEEECT-TSSEEEEEEEEEEECSSCEEECCCEEEEEETTT------TEEEEEEEC-CSSCCCEEECTTSSCEE-EE--SS
T ss_pred             ceEECC-CCCEEEEEecccccccccccccCceEEEEECCC------CcEEEEEeC-CCCcceeEECCCCCEEE-Ee--CC
Confidence            899999 898888885            579999999987      777776664 45678899999999865 44  68


Q ss_pred             cEEEEeCCcc
Q 021657          209 LLNIWDYEKV  218 (309)
Q Consensus       209 ~i~iwd~~~~  218 (309)
                      .|.+||+...
T Consensus       155 ~i~~~d~~~~  164 (337)
T 1pby_B          155 DLHVMDPEAG  164 (337)
T ss_dssp             SEEEEETTTT
T ss_pred             eEEEEECCCC
Confidence            8999999763

>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp}

Probab=99.75  E-value=3.8e-17  Score=133.12  Aligned_cols=241  Identities=11%  Similarity=0.068  Sum_probs=145.2

Q ss_pred             CCCCCcceEEEEECCCCCEEEEecCCCcEEEEeCCccccccccC--Cccc----cccCCCCceee---------------
Q 021657            5 TGHQDNAEFALAMCPTEPYVLSGGKDKSVVLWSIQDHITSSATD--PATA----KSAGSSGSIIK---------------   63 (309)
Q Consensus         5 ~~H~~~~V~~~~~~~~~~~l~t~~~dg~i~vwd~~~~~~~~~~~--~~~~----~~~~~~~~~~~---------------   63 (309)
                      .+|.. .+..++|+|||+.|+.++.++.|++||+.++.......  ....    ...........               
T Consensus        77 ~~~~~-~~~~~~~spdg~~l~~~~~~~~l~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~dg~~l~~~~~~~~~~~~~~~~  155 (388)
T 3pe7_A           77 EGRGD-NTFGGFLSPDDDALFYVKDGRNLMRVDLATLEENVVYQVPAEWVGYGTWVANSDCTKLVGIEIRREDWVPLTDW  155 (388)
T ss_dssp             CSSCB-CSSSCEECTTSSEEEEEETTTEEEEEETTTCCEEEEEECCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSH
T ss_pred             eCCCC-CccceEEcCCCCEEEEEeCCCeEEEEECCCCcceeeeechhhcccccceeECCCCCeeccccccCccccccccc
Confidence            34444 44567899999999999999999999998874322111  1000    00011111111               


Q ss_pred             -----cCCCCCCCCcccCCCCCcCcccccccccCCeEEEEEec-CCCcEEEEEcCC------CeEEEEEcCCCCcceEEE
Q 021657           64 -----QSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCP-SSAQEFCSVGDD------SCLILWDARVGTSPVIKV  131 (309)
Q Consensus        64 -----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~~l~s~~~d------g~i~iwd~~~~~~~~~~~  131 (309)
                           .........+.+++..+.+. ..+..+...+..+.|+| +| ..|+....+      ..|.++|...++  . ..
T Consensus       156 ~~~~~~~~~~~~~~l~~~d~~~g~~-~~l~~~~~~~~~~~~sp~dg-~~l~~~~~~~~~~~~~~l~~~d~~~~~--~-~~  230 (388)
T 3pe7_A          156 KKFHEFYFTKPCCRLMRVDLKTGES-TVILQENQWLGHPIYRPYDD-STVAFCHEGPHDLVDARMWLINEDGTN--M-RK  230 (388)
T ss_dssp             HHHHHHGGGCCCEEEEEEETTTCCE-EEEEEESSCEEEEEEETTEE-EEEEEEECSCTTTSSCSEEEEETTSCC--C-EE
T ss_pred             chhhhhhccCCcceEEEEECCCCce-EEeecCCccccccEECCCCC-CEEEEEEecCCCCCcceEEEEeCCCCc--e-EE
Confidence                 00122335667777776654 34445677899999999 88 666655543      378888876555  2 23


Q ss_pred             eeccC--CceeEEEeccCCCCeEEEEcC-CC----cEEEEecCCCCCCCCCC--ceeeeccCCC---CeeEEEEecCCCc
Q 021657          132 EKAHD--ADLHCVDWNPLDDNLILTGSA-DN----SVRMFDRRNLTSNGVGS--PINKFEGHSA---AVLCVQWSPDKSS  199 (309)
Q Consensus       132 ~~~~~--~~v~~~~~~~~~~~~l~~~~~-dg----~i~i~d~~~~~~~~~~~--~~~~~~~~~~---~v~~~~~~~~~~~  199 (309)
                      +..+.  ..+..++|+| +++.|+..+. ++    .|++||+.+      ++  .+..+..+..   ....++|+|||+.
T Consensus       231 l~~~~~~~~~~~~~~sp-dg~~l~~~~~~~~~~~~~l~~~d~~~------g~~~~l~~~~~~~~~~~~~~~~~~spdg~~  303 (388)
T 3pe7_A          231 VKTHAEGESCTHEFWVP-DGSALVYVSYLKGSPDRFIYSADPET------LENRQLTSMPACSHLMSNYDGSLMVGDGSD  303 (388)
T ss_dssp             SCCCCTTEEEEEEEECT-TSSCEEEEEEETTCCCEEEEEECTTT------CCEEEEEEECCEEEEEECTTSSEEEEEECC
T ss_pred             eeeCCCCcccccceECC-CCCEEEEEecCCCCCcceEEEEecCC------CceEEEEcCCCceeeeecCCCCeEccCCCc
Confidence            33333  3578899999 8887655433 22    399999987      44  2333332100   0122379999998


Q ss_pred             EEEEe--------cCCCcEEEEeCCcccccccCCCCCcCCCCceeeeecCCCc-----------ceeeEEEccCCCeEEE
Q 021657          200 VFGSS--------AEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRD-----------KVVDFHWNASDPWTVV  260 (309)
Q Consensus       200 l~~~~--------~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~v~~~~~~~~~~~~~~  260 (309)
                      ++++.        ..+..|++||+.. ++               ...+..+..           .+..++|+|++..++.
T Consensus       304 l~~~~~~~~~~~~~~~~~i~~~d~~~-~~---------------~~~l~~~~~~~~~~~~~~~~~~~~~~~spDg~~l~~  367 (388)
T 3pe7_A          304 APVDVQDDSGYKIENDPFLYVFNMKN-GT---------------QHRVARHDTSWKVFEGDRQVTHPHPSFTPDDKQILF  367 (388)
T ss_dssp             C------------CCCCEEEEEETTT-TE---------------EEEEEECCCCCCCBTTBSSTTCCCCEECTTSSEEEE
T ss_pred             ceeEeeeccccccCCCCEEEEEeccC-Cc---------------eEEeccccCcccccccccccCCCCccCCCCCCEEEE
Confidence            65433        4567899999986 21               122233333           5788999999998887


Q ss_pred             EecCCCCCCCCCCeEEEEEcc
Q 021657          261 SVSDDCDSTGGGGTLQIWRMS  281 (309)
Q Consensus       261 s~s~d~~s~~~dg~v~vw~~~  281 (309)
                      +...+       |...||.+.
T Consensus       368 ~s~~~-------g~~~l~~~~  381 (388)
T 3pe7_A          368 TSDVH-------GKPALYLAT  381 (388)
T ss_dssp             EECTT-------SSCEEEEEE
T ss_pred             EecCC-------CceeEEEEE
Confidence            65544       667777665

>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*

Probab=99.75  E-value=2.8e-15  Score=119.35  Aligned_cols=205  Identities=13%  Similarity=0.140  Sum_probs=142.7

Q ss_pred             ceEEEEECCCCCEEEEecCCCcEEEEeCCcccc-ccccCCccccccCCCCceeecCCCCCCCCcccCCCCCcCccccccc
Q 021657           11 AEFALAMCPTEPYVLSGGKDKSVVLWSIQDHIT-SSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNG   89 (309)
Q Consensus        11 ~V~~~~~~~~~~~l~t~~~dg~i~vwd~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   89 (309)
                      ....++++|+|+++++...++.|++||...... ......                               ......-.+
T Consensus        92 ~p~gia~d~~g~l~v~d~~~~~v~~~~~~g~~~~~~~~~~-------------------------------~~~~g~~~~  140 (329)
T 3fvz_A           92 LPHGLSIDTDGNYWVTDVALHQVFKLDPHSKEGPLLILGR-------------------------------SMQPGSDQN  140 (329)
T ss_dssp             SEEEEEECTTSCEEEEETTTTEEEEECTTCSSCCSEEESB-------------------------------TTBCCCSTT
T ss_pred             CceEEEECCCCCEEEEECCCCEEEEEeCCCCeEEEEEecc-------------------------------cCCCCCCcc
Confidence            468999999999999999999999999864310 000000                               000000012


Q ss_pred             ccCCeEEEEEec-CCCcEEEEEc-CCCeEEEEEcCCCCcceEEEeec----------cCCceeEEEeccCC-CCeEEEEc
Q 021657           90 HEDTVEDVTFCP-SSAQEFCSVG-DDSCLILWDARVGTSPVIKVEKA----------HDADLHCVDWNPLD-DNLILTGS  156 (309)
Q Consensus        90 ~~~~v~~~~~~~-~~~~~l~s~~-~dg~i~iwd~~~~~~~~~~~~~~----------~~~~v~~~~~~~~~-~~~l~~~~  156 (309)
                      +-.....++++| ++ .++++.+ .++.|++||. .++  ....+..          +-.....++++| + +.++++..
T Consensus       141 ~~~~P~~ia~~~~~g-~lyv~d~~~~~~I~~~~~-~g~--~~~~~~~~g~~~~~~~~~~~~p~gia~d~-~~g~l~v~d~  215 (329)
T 3fvz_A          141 HFCQPTDVAVEPSTG-AVFVSDGYCNSRIVQFSP-SGK--FVTQWGEESSGSSPRPGQFSVPHSLALVP-HLDQLCVADR  215 (329)
T ss_dssp             CCSSEEEEEECTTTC-CEEEEECSSCCEEEEECT-TSC--EEEEECEECCSSSCCTTEESCEEEEEEET-TTTEEEEEET
T ss_pred             ccCCCcEEEEeCCCC-eEEEEeCCCCCeEEEEcC-CCC--EEEEeccCCCCCCCCCcccCCCcEEEEEC-CCCEEEEEEC
Confidence            445688999999 55 7788876 6899999994 455  3444422          223478999999 6 78888888


Q ss_pred             CCCcEEEEecCCCCCCCCCCceeeec--cCCCCeeEEEEec------CCCcEEEEecCCCcEEEEeCCcccccccCCCCC
Q 021657          157 ADNSVRMFDRRNLTSNGVGSPINKFE--GHSAAVLCVQWSP------DKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRT  228 (309)
Q Consensus       157 ~dg~i~i~d~~~~~~~~~~~~~~~~~--~~~~~v~~~~~~~------~~~~l~~~~~~dg~i~iwd~~~~~~~~~~~~~~  228 (309)
                      .++.|++||..+      ++.+..+.  .+...+..++++|      ++. ++++...+..|++||+.. +         
T Consensus       216 ~~~~I~~~~~~~------G~~~~~~~~~~~~~~~~~~~~~pg~~~~~~g~-~~v~~~~~~~v~~~~~~~-g---------  278 (329)
T 3fvz_A          216 ENGRIQCFKTDT------KEFVREIKHASFGRNVFAISYIPGFLFAVNGK-PYFGDQEPVQGFVMNFSS-G---------  278 (329)
T ss_dssp             TTTEEEEEETTT------CCEEEEECCTTTTTCEEEEEEETTEEEEEECC-CCTTCSCCCCEEEEETTT-C---------
T ss_pred             CCCEEEEEECCC------CcEEEEEeccccCCCcceeeecCCEEEEeCCC-EEeccCCCcEEEEEEcCC-C---------
Confidence            899999999987      77777774  3456788999999      333 222334456899999876 2         


Q ss_pred             cCCCCceeeee---cCCCcceeeEEEccCCCeEEEEecCCCCCCCCCCeEEEEEcc
Q 021657          229 TNYPAGLFFQH---AGHRDKVVDFHWNASDPWTVVSVSDDCDSTGGGGTLQIWRMS  281 (309)
Q Consensus       229 ~~~~~~~~~~~---~~~~~~v~~~~~~~~~~~~~~s~s~d~~s~~~dg~v~vw~~~  281 (309)
                           +.+..+   .++...+.+++++|++ .++++...+       +.|++|++.
T Consensus       279 -----~~~~~~~~~~~~~~~p~~ia~~~dG-~lyvad~~~-------~~I~~~~~~  321 (329)
T 3fvz_A          279 -----EIIDVFKPVRKHFDMPHDIVASEDG-TVYIGDAHT-------NTVWKFTLT  321 (329)
T ss_dssp             -----CEEEEECCSSSCCSSEEEEEECTTS-EEEEEESSS-------CCEEEEEEE
T ss_pred             -----eEEEEEcCCCCccCCeeEEEECCCC-CEEEEECCC-------CEEEEEeCC
Confidence                 223333   3566778999999988 677766555       899999997

>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A

Probab=99.75  E-value=4.7e-16  Score=124.07  Aligned_cols=211  Identities=9%  Similarity=0.057  Sum_probs=137.0

Q ss_pred             cCCCCCcceEEEEECCCCCEEEEecCCCcEEEEeCCccccccccCCccccccCCCCceeecCCCCCCCCcccCCCCCcCc
Q 021657            4 LTGHQDNAEFALAMCPTEPYVLSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGP   83 (309)
Q Consensus         4 l~~H~~~~V~~~~~~~~~~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   83 (309)
                      +.++.. .+.+++|+|+|++++++..++.|.+||.+++..                                        
T Consensus        40 ~~~~~~-~~~~~~~~~~g~l~~~~~~~~~i~~~d~~~~~~----------------------------------------   78 (333)
T 2dg1_A           40 ISKKGL-QLEGLNFDRQGQLFLLDVFEGNIFKINPETKEI----------------------------------------   78 (333)
T ss_dssp             EESSCC-CEEEEEECTTSCEEEEETTTCEEEEECTTTCCE----------------------------------------
T ss_pred             EeccCc-cccCcEECCCCCEEEEECCCCEEEEEeCCCCcE----------------------------------------
Confidence            444555 468899999999888888889999998864311                                        


Q ss_pred             ccccccccCCeEEEEEecCCCcEEEEEcCC----CeEEEEEcCCCCcceEEEee--ccCCceeEEEeccCCCCeEEEEcC
Q 021657           84 RGIYNGHEDTVEDVTFCPSSAQEFCSVGDD----SCLILWDARVGTSPVIKVEK--AHDADLHCVDWNPLDDNLILTGSA  157 (309)
Q Consensus        84 ~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d----g~i~iwd~~~~~~~~~~~~~--~~~~~v~~~~~~~~~~~~l~~~~~  157 (309)
                      ......+...+.++++++++ .++++...+    +.|.+||..++..  .....  .....+..++++| +++++++...
T Consensus        79 ~~~~~~~~~~~~~i~~~~dg-~l~v~~~~~~~~~~~i~~~d~~~~~~--~~~~~~~~~~~~~~~i~~d~-~g~l~v~~~~  154 (333)
T 2dg1_A           79 KRPFVSHKANPAAIKIHKDG-RLFVCYLGDFKSTGGIFAATENGDNL--QDIIEDLSTAYCIDDMVFDS-KGGFYFTDFR  154 (333)
T ss_dssp             EEEEECSSSSEEEEEECTTS-CEEEEECTTSSSCCEEEEECTTSCSC--EEEECSSSSCCCEEEEEECT-TSCEEEEECC
T ss_pred             EEEeeCCCCCcceEEECCCC-cEEEEeCCCCCCCceEEEEeCCCCEE--EEEEccCccCCcccceEECC-CCCEEEEecc
Confidence            11111345679999999998 677776666    6899999887662  22222  2345789999999 8887776653


Q ss_pred             ------CCcEEEEecCCCCCCCCCCceeeeccCCCCeeEEEEecCCCcEEEEecCCCcEEEEeCCcccccccCCCCCcCC
Q 021657          158 ------DNSVRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNY  231 (309)
Q Consensus       158 ------dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~  231 (309)
                            .+.|..+|...      ++. ..+......+..++|+|+++.++++.+.++.|.+||++..+......      
T Consensus       155 ~~~~~~~~~l~~~~~~~------~~~-~~~~~~~~~~~~i~~~~dg~~l~v~~~~~~~i~~~d~~~~g~~~~~~------  221 (333)
T 2dg1_A          155 GYSTNPLGGVYYVSPDF------RTV-TPIIQNISVANGIALSTDEKVLWVTETTANRLHRIALEDDGVTIQPF------  221 (333)
T ss_dssp             CBTTBCCEEEEEECTTS------CCE-EEEEEEESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSSSEEEE------
T ss_pred             ccccCCCceEEEEeCCC------CEE-EEeecCCCcccceEECCCCCEEEEEeCCCCeEEEEEecCCCcCcccc------
Confidence                  24566666554      332 23322334578999999998777677778899999986422211100      


Q ss_pred             CCceeeeecCCCcceeeEEEccCCCeEEEEecCCCCCCCCCCeEEEEEcc
Q 021657          232 PAGLFFQHAGHRDKVVDFHWNASDPWTVVSVSDDCDSTGGGGTLQIWRMS  281 (309)
Q Consensus       232 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~s~d~~s~~~dg~v~vw~~~  281 (309)
                      .......+.++ ..+..+++++++..++ +...+       +.|.+||..
T Consensus       222 ~~~~~~~~~~~-~~~~~i~~d~~G~l~v-~~~~~-------~~v~~~d~~  262 (333)
T 2dg1_A          222 GATIPYYFTGH-EGPDSCCIDSDDNLYV-AMYGQ-------GRVLVFNKR  262 (333)
T ss_dssp             EEEEEEECCSS-SEEEEEEEBTTCCEEE-EEETT-------TEEEEECTT
T ss_pred             cceEEEecCCC-CCCCceEECCCCCEEE-EEcCC-------CEEEEECCC
Confidence            00011112222 4678899999887544 33333       789999875

>2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A*

Probab=99.74  E-value=9e-16  Score=134.65  Aligned_cols=232  Identities=9%  Similarity=-0.033  Sum_probs=147.1

Q ss_pred             CCCCcceEEEEECCCCCEEEEecCCC-----cEEEEeCCccccccccCCccccccCCCCceeecCCCCCCCCcccCCCCC
Q 021657            6 GHQDNAEFALAMCPTEPYVLSGGKDK-----SVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPS   80 (309)
Q Consensus         6 ~H~~~~V~~~~~~~~~~~l~t~~~dg-----~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (309)
                      +|.. .+..++|||||++||.++.++     .|++||+.++...                                    
T Consensus       122 ~~~~-~~~~~~~SPDg~~la~~~~~~G~~~~~i~v~d~~tg~~~------------------------------------  164 (710)
T 2xdw_A          122 DGTV-ALRGYAFSEDGEYFAYGLSASGSDWVTIKFMKVDGAKEL------------------------------------  164 (710)
T ss_dssp             TSCE-EEEEEEECTTSSEEEEEEEETTCSCEEEEEEETTTTEEE------------------------------------
T ss_pred             CCCE-EEEEEEECCCCCEEEEEEcCCCCceEEEEEEECCCCCCC------------------------------------
Confidence            3444 688999999999998665543     8999999864221                                    


Q ss_pred             cCcccccccccCCeEEEEEecCCCcEEEEEcCCCe----------------EEEEEcCCCCcceEEEee--ccCCceeEE
Q 021657           81 VGPRGIYNGHEDTVEDVTFCPSSAQEFCSVGDDSC----------------LILWDARVGTSPVIKVEK--AHDADLHCV  142 (309)
Q Consensus        81 ~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~----------------i~iwd~~~~~~~~~~~~~--~~~~~v~~~  142 (309)
                          .....+ ..+..++|+||| +.|+.++.++.                |++|++.++.........  .+...+..+
T Consensus       165 ----~~~~~~-~~~~~~~wspDg-~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~~~l~t~~~~~~~v~~~~~~~~~~~~~  238 (710)
T 2xdw_A          165 ----PDVLER-VKFSCMAWTHDG-KGMFYNAYPQQDGKSDGTETSTNLHQKLYYHVLGTDQSEDILCAEFPDEPKWMGGA  238 (710)
T ss_dssp             ----EEEEEE-ECSCCEEECTTS-SEEEEEECCCCSSCCSSSCCCCCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEE
T ss_pred             ----cccccC-cccceEEEEeCC-CEEEEEEECCccccccccccccCCCCEEEEEECCCCcccceEEeccCCCCeEEEEE
Confidence                111111 225678999999 56666666655                999999876633233332  245567899


Q ss_pred             EeccCCCCeEEEEcC-----CCcEEEEecCCCCCCC-CCCceeeeccCCCCeeEEEEecCCCcEEEEecCC---CcEEEE
Q 021657          143 DWNPLDDNLILTGSA-----DNSVRMFDRRNLTSNG-VGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAED---GLLNIW  213 (309)
Q Consensus       143 ~~~~~~~~~l~~~~~-----dg~i~i~d~~~~~~~~-~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~d---g~i~iw  213 (309)
                      .|+| ++++|+..+.     +..|++||+.+..... .......+..+...+.. .|+|+|..+++.+..+   +.|.+|
T Consensus       239 ~~Sp-Dg~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~l~~~~~~~~~-~~s~dg~~l~~~s~~~~~~~~l~~~  316 (710)
T 2xdw_A          239 ELSD-DGRYVLLSIREGCDPVNRLWYCDLQQESNGITGILKWVKLIDNFEGEYD-YVTNEGTVFTFKTNRHSPNYRLINI  316 (710)
T ss_dssp             EECT-TSCEEEEEEECSSSSCCEEEEEEGGGSSSSSCSSCCCEEEECSSSSCEE-EEEEETTEEEEEECTTCTTCEEEEE
T ss_pred             EEcC-CCCEEEEEEEccCCCccEEEEEECcccccccCCccceEEeeCCCCcEEE-EEeccCCEEEEEECCCCCCCEEEEE
Confidence            9999 9998887764     5689999987510000 01134455555555554 5889999876565543   369999


Q ss_pred             eCCcccccccCCCCCcCCCCceeeeecCCCc--ceeeEEEccCCCeEEEEecCCCCCCCCCCe--EEEEEccccccCChh
Q 021657          214 DYEKVGKKVEQGPRTTNYPAGLFFQHAGHRD--KVVDFHWNASDPWTVVSVSDDCDSTGGGGT--LQIWRMSDLIYRPQD  289 (309)
Q Consensus       214 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~v~~~~~~~~~~~~~~s~s~d~~s~~~dg~--v~vw~~~~~~~~~~~  289 (309)
                      |+......             ....+..|..  .+..+.|++ +..++++...|       +.  |.+|++.      ++
T Consensus       317 d~~~~~~~-------------~~~~l~~~~~~~~~~~~~~~~-~~~lv~~~~~~-------g~~~l~~~~~~------~g  369 (710)
T 2xdw_A          317 DFTDPEES-------------KWKVLVPEHEKDVLEWVACVR-SNFLVLCYLHD-------VKNTLQLHDLA------TG  369 (710)
T ss_dssp             ETTSCCGG-------------GCEEEECCCSSCEEEEEEEET-TTEEEEEEEET-------TEEEEEEEETT------TC
T ss_pred             eCCCCCcc-------------cceeccCCCCCCeEEEEEEEc-CCEEEEEEEEC-------CEEEEEEEECC------CC
Confidence            98762210             1122333433  678899986 56677776665       64  5556664      34


Q ss_pred             hHhHhhhcccceEEEeeeCC
Q 021657          290 EVLAELEKFKAHVISCTSKP  309 (309)
Q Consensus       290 ~~~~~~~~h~~~v~~~~~~P  309 (309)
                      +.+..+..+.+.|..++++|
T Consensus       370 ~~~~~l~~~~~~v~~~~~s~  389 (710)
T 2xdw_A          370 ALLKIFPLEVGSVVGYSGQK  389 (710)
T ss_dssp             CEEEEECCCSSEEEEEECCT
T ss_pred             CEEEecCCCCceEEEEecCC
Confidence            44555666677777777765

>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...

Probab=99.73  E-value=2.1e-16  Score=127.23  Aligned_cols=255  Identities=10%  Similarity=0.036  Sum_probs=162.0

Q ss_pred             EEEECCCCCEEEEec----------CCCcEEEEeCCccccccccCC----------ccccccCCCCceeecCCCCCCCCc
Q 021657           14 ALAMCPTEPYVLSGG----------KDKSVVLWSIQDHITSSATDP----------ATAKSAGSSGSIIKQSPKPGDGND   73 (309)
Q Consensus        14 ~~~~~~~~~~l~t~~----------~dg~i~vwd~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~   73 (309)
                      .++|+|||++|+++.          .++.|.+||..+.........          ......+......+.........+
T Consensus        54 ~i~~spdg~~lyv~~~~~~~~~~g~~~~~v~v~d~~t~~~~~~i~~~~~~~~~g~~p~~i~~spdg~~l~v~n~~~~~~v  133 (361)
T 2oiz_A           54 HVQVSNDGKKIYTMTTYHERITRGKRSDVVEVWDADKLTFEKEISLPPKRVQGLNYDGLFRQTTDGKFIVLQNASPATSI  133 (361)
T ss_dssp             EEEECTTSSEEEEEEEEETTSSSSCEEEEEEEEETTTCCEEEEEEECTTBCCBCCCGGGEEECTTSSEEEEEEESSSEEE
T ss_pred             ceEECCCCCEEEEEEecccccccCCCCCEEEEEECcCCcEEEEEEcCccccccCCCcceEEECCCCCEEEEECCCCCCeE
Confidence            899999999998876          367899999987533222110          111122222323332222235678


Q ss_pred             ccCCCCCcCcccc-cccccCCeEEEEEecCCCcEEEEEcCCCeEEEEEcCCCCcceEEE------eeccCCceeEEEecc
Q 021657           74 KAADGPSVGPRGI-YNGHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPVIKV------EKAHDADLHCVDWNP  146 (309)
Q Consensus        74 ~~~~~~~~~~~~~-~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~------~~~~~~~v~~~~~~~  146 (309)
                      .+++..+.+.+.. +.. .+ ...+.+.|++...+++.+.||.+.+|+...... ....      +.....+ ..+.++|
T Consensus       134 ~v~d~~~~~~~~~~i~~-~~-~~~v~~~p~~~~~~~~~~~dg~~~~v~~~~~g~-~~~~~~~~~~~~~~~~~-~~~~~~~  209 (361)
T 2oiz_A          134 GIVDVAKGDYVEDVTAA-AG-CWSVIPQPNRPRSFMTICGDGGLLTINLGEDGK-VASQSRSKQMFSVKDDP-IFIAPAL  209 (361)
T ss_dssp             EEEETTTTEEEEEEGGG-TT-EEEEEECTTSSSEEEEEETTSSEEEEEECTTSS-EEEEEECCCCSCTTTSC-BCSCCEE
T ss_pred             EEEECCCCcEEEEEecC-CC-cceeEEcCCCCeeEEEECCCCcEEEEEECCCCc-EeeeccccceEcCCCCc-eEEEecc
Confidence            8888888776665 432 22 233567787767888999999999999865321 2211      1112222 2334456


Q ss_pred             CCCCeEEEEcCCCcEEEEecCCCCCCCCCCceeeeccC----------CCCeeEEEEecCCCcEEEEec----------C
Q 021657          147 LDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGH----------SAAVLCVQWSPDKSSVFGSSA----------E  206 (309)
Q Consensus       147 ~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~----------~~~v~~~~~~~~~~~l~~~~~----------~  206 (309)
                       ++..++..+.++.+.++|+....    ...+..+...          ......++++|++.+++++..          .
T Consensus       210 -~g~~~~~~~~~~~v~v~d~~~~~----~~~~~~~~~~~~~~~~~~~~p~g~~~~a~~~dg~~lyv~~~~~~~~~~~~~~  284 (361)
T 2oiz_A          210 -DKDKAHFVSYYGNVYSADFSGDE----VKVDGPWSLLNDEDKAKNWVPGGYNLVGLHRASGRMYVFMHPDGKEGTHKFP  284 (361)
T ss_dssp             -CSSEEEEEBTTSEEEEEECSSSS----CEEEEEEESCCHHHHHTTCEECCSSCEEEETTTTEEEEEEESSCCTTCTTCC
T ss_pred             -cCCEEEEEeCCCeEEEEEecCCC----ceecccccccCccccccccccCCeeEEEEecCCCeEEEEEccCCCcccccCC
Confidence             66677777788999999987521    1112221100          111223789999998876654          1


Q ss_pred             CCcEEEEeCCcccccccCCCCCcCCCCceeeeecCCCcceeeEEEccCCCeEEEEecCCCCCCCCCCeEEEEEccccccC
Q 021657          207 DGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKVVDFHWNASDPWTVVSVSDDCDSTGGGGTLQIWRMSDLIYR  286 (309)
Q Consensus       207 dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~s~d~~s~~~dg~v~vw~~~~~~~~  286 (309)
                      .+.|.+||+.+               .+.+..+..+.  +.+++|+|++.+++++.        . +.|.+||..     
T Consensus       285 ~~~v~viD~~t---------------~~~v~~i~~~~--p~~ia~spdg~~l~v~n--------~-~~v~v~D~~-----  333 (361)
T 2oiz_A          285 AAEIWVMDTKT---------------KQRVARIPGRD--ALSMTIDQQRNLMLTLD--------G-GNVNVYDIS-----  333 (361)
T ss_dssp             CSEEEEEETTT---------------TEEEEEEECTT--CCEEEEETTTTEEEEEC--------S-SCEEEEECS-----
T ss_pred             CceEEEEECCC---------------CcEEEEEecCC--eeEEEECCCCCEEEEeC--------C-CeEEEEECC-----
Confidence            35899999987               44555666666  89999999999777432        2 799999998     


Q ss_pred             Chh--hHhHhhhcccceEEEeeeCC
Q 021657          287 PQD--EVLAELEKFKAHVISCTSKP  309 (309)
Q Consensus       287 ~~~--~~~~~~~~h~~~v~~~~~~P  309 (309)
                       ++  +.+.++..+......++++|
T Consensus       334 -t~~l~~~~~i~~~G~~P~~~~~~p  357 (361)
T 2oiz_A          334 -QPEPKLLRTIEGAAEASLQVQFHP  357 (361)
T ss_dssp             -SSSCEEEEEETTSCSSEEEEEECC
T ss_pred             -CCcceeeEEeccCCCCcEEEEecC
Confidence             67  77777766677778888877

>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A

Probab=99.73  E-value=1.8e-15  Score=122.13  Aligned_cols=200  Identities=12%  Similarity=0.098  Sum_probs=120.4

Q ss_pred             ccCCeEEEEEecCCCcEEEEEcCC----CeEEEEEcCCC--CcceEEEeeccCCceeEEEeccCCCCeEEEE-cCCCcEE
Q 021657           90 HEDTVEDVTFCPSSAQEFCSVGDD----SCLILWDARVG--TSPVIKVEKAHDADLHCVDWNPLDDNLILTG-SADNSVR  162 (309)
Q Consensus        90 ~~~~v~~~~~~~~~~~~l~s~~~d----g~i~iwd~~~~--~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~-~~dg~i~  162 (309)
                      +...+..++|+|++ ++|++++.+    +.|.+|++...  +.........+......+++   ++++++++ ..++.|.
T Consensus        48 ~~~~p~~l~~spdg-~~l~~~~~~~~~~~~v~~~~~~~~~g~~~~~~~~~~~~~~p~~~~~---dg~~l~~~~~~~~~v~  123 (361)
T 3scy_A           48 EVANPSYLIPSADG-KFVYSVNEFSKDQAAVSAFAFDKEKGTLHLLNTQKTMGADPCYLTT---NGKNIVTANYSGGSIT  123 (361)
T ss_dssp             ECSCCCSEEECTTS-SEEEEEECCSSTTCEEEEEEEETTTTEEEEEEEEECSSSCEEEEEE---CSSEEEEEETTTTEEE
T ss_pred             cCCCCceEEECCCC-CEEEEEEccCCCCCcEEEEEEeCCCCcEEEeeEeccCCCCcEEEEE---CCCEEEEEECCCCEEE
Confidence            56677889999999 667777765    89999998763  32223333334556677777   45555554 4688999


Q ss_pred             EEecCCCCCCCCCCceeeecc--------CCCCeeEEEEecCCCcEEEEecCCCcEEEEeCCcccc----c-ccCCCCCc
Q 021657          163 MFDRRNLTSNGVGSPINKFEG--------HSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGK----K-VEQGPRTT  229 (309)
Q Consensus       163 i~d~~~~~~~~~~~~~~~~~~--------~~~~v~~~~~~~~~~~l~~~~~~dg~i~iwd~~~~~~----~-~~~~~~~~  229 (309)
                      +|++................+        +...+.+++|+|+|++++++...++.|.+|++.....    . +..     
T Consensus       124 ~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~v~v~~~~~~~~~~~~~~l~~-----  198 (361)
T 3scy_A          124 VFPIGQDGALLPASDVIEFKGSGPDKERQTMPHLHCVRITPDGKYLLADDLGTDQIHKFNINPNANADNKEKFLT-----  198 (361)
T ss_dssp             EEEBCTTSCBCSCSEEEECCCCCSCTTTCSSCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTCCTTTCCCCEE-----
T ss_pred             EEEeCCCCcCcccceeEEccCCCCCccccCCCcceEEEECCCCCEEEEEeCCCCEEEEEEEcCCCCcccccceee-----
Confidence            999975211000000011111        1223578999999998887777789999999876321    0 000     


Q ss_pred             CCCC-ceeeeecCCCcceeeEEEccCCCeEEEEecCCCCCCCCCCeEEEEEccccccCChhhHhHhhhcccceEEEeeeC
Q 021657          230 NYPA-GLFFQHAGHRDKVVDFHWNASDPWTVVSVSDDCDSTGGGGTLQIWRMSDLIYRPQDEVLAELEKFKAHVISCTSK  308 (309)
Q Consensus       230 ~~~~-~~~~~~~~~~~~v~~~~~~~~~~~~~~s~s~d~~s~~~dg~v~vw~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~  308 (309)
                         . ........+...+..++|+|++.+++++...+       +.|.+|++...... ....+.....+......++|+
T Consensus       199 ---~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~-------~~v~v~~~~~g~~~-~~~~~~~~~~~~~~~~~i~~s  267 (361)
T 3scy_A          199 ---KGTPEAFKVAPGSGPRHLIFNSDGKFAYLINEIG-------GTVIAFRYADGMLD-EIQTVAADTVNAQGSGDIHLS  267 (361)
T ss_dssp             ---EEEEEEEECCTTCCEEEEEECTTSSEEEEEETTT-------CEEEEEEEETTEEE-EEEEEESCSSCCCCEEEEEEC
T ss_pred             ---cccccceecCCCCCCeEEEEcCCCCEEEEEcCCC-------CeEEEEEecCCceE-EeEEEecCCCCCCCcccEEEC
Confidence               0 00111123345578999999999888765544       89999999721100 000111222333445777787


Q ss_pred             C
Q 021657          309 P  309 (309)
Q Consensus       309 P  309 (309)
                      |
T Consensus       268 p  268 (361)
T 3scy_A          268 P  268 (361)
T ss_dssp             T
T ss_pred             C
Confidence            6

>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}

Probab=99.73  E-value=1.5e-15  Score=119.12  Aligned_cols=219  Identities=10%  Similarity=0.033  Sum_probs=147.6

Q ss_pred             ccCCCCCcceEEEEECCCCC-EEEEecCCCcEEEEeCCccccccccCCccccccCCCCceeecCCCCCCCCcccCCCCCc
Q 021657            3 ILTGHQDNAEFALAMCPTEP-YVLSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSV   81 (309)
Q Consensus         3 ~l~~H~~~~V~~~~~~~~~~-~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (309)
                      .+..+.. ...+++|+|+++ +++++..++.|..||..++                                        
T Consensus        22 ~l~~~~~-~~eg~~~d~~g~~l~~~~~~~~~i~~~~~~~~----------------------------------------   60 (296)
T 3e5z_A           22 RLADGFT-WTEGPVYVPARSAVIFSDVRQNRTWAWSDDGQ----------------------------------------   60 (296)
T ss_dssp             EEECCCS-SEEEEEEEGGGTEEEEEEGGGTEEEEEETTSC----------------------------------------
T ss_pred             EEecCCc-cccCCeEeCCCCEEEEEeCCCCEEEEEECCCC----------------------------------------
Confidence            3444555 568999999998 7888999999999998742                                        


Q ss_pred             CcccccccccCCeEEEEEecCCCcEEEEEcCCCeEEEEEcCCCCcceEEEeec----cCCceeEEEeccCCCCeEEE---
Q 021657           82 GPRGIYNGHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPVIKVEKA----HDADLHCVDWNPLDDNLILT---  154 (309)
Q Consensus        82 ~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~----~~~~v~~~~~~~~~~~~l~~---  154 (309)
                        ...+..+...+.+++++++| .++++...++.|.+||..+++  .......    ....+..++++| +++++++   
T Consensus        61 --~~~~~~~~~~~~~l~~~~dg-~l~v~~~~~~~i~~~d~~~g~--~~~~~~~~~~~~~~~~~~i~~d~-~G~l~vtd~~  134 (296)
T 3e5z_A           61 --LSPEMHPSHHQNGHCLNKQG-HLIACSHGLRRLERQREPGGE--WESIADSFEGKKLNSPNDVCLAP-DGSLWFSDPT  134 (296)
T ss_dssp             --EEEEESSCSSEEEEEECTTC-CEEEEETTTTEEEEECSTTCC--EEEEECEETTEECCCCCCEEECT-TSCEEEEECS
T ss_pred             --eEEEECCCCCcceeeECCCC-cEEEEecCCCeEEEEcCCCCc--EEEEeeccCCCCCCCCCCEEECC-CCCEEEECCc
Confidence              12233355678999999998 777777777899999997777  2222211    123467899999 8988887   


Q ss_pred             -EcC-------------CCcEEEEecCCCCCCCCCCceeeeccCCCCeeEEEEecCCCcEEEEecCCCcEEEEeCCcccc
Q 021657          155 -GSA-------------DNSVRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGK  220 (309)
Q Consensus       155 -~~~-------------dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~dg~i~iwd~~~~~~  220 (309)
                       |+.             .+.|..+|..        ..+..+..+....+.++|+|+++.+ ++.+.++.|.+|++...+.
T Consensus       135 ~g~~~~~~~~~~~~~~~~~~l~~~~~~--------g~~~~~~~~~~~~~gi~~s~dg~~l-v~~~~~~~i~~~~~~~~g~  205 (296)
T 3e5z_A          135 YGIDKPEEGYGGEMELPGRWVFRLAPD--------GTLSAPIRDRVKPNGLAFLPSGNLL-VSDTGDNATHRYCLNARGE  205 (296)
T ss_dssp             HHHHCGGGSSCCCCCSSSCEEEEECTT--------SCEEEEECCCSSEEEEEECTTSCEE-EEETTTTEEEEEEECSSSC
T ss_pred             cccccccccccccccCCCcEEEEECCC--------CCEEEeecCCCCCccEEECCCCCEE-EEeCCCCeEEEEEECCCCc
Confidence             331             2345555433        2233444455677899999999976 7888889999999873222


Q ss_pred             c-ccCCCCCcCCCCceeeeecCCCcceeeEEEccCCCeEEEEecCCCCCCCCCCeEEEEEccccccCChhhHhHhhhccc
Q 021657          221 K-VEQGPRTTNYPAGLFFQHAGHRDKVVDFHWNASDPWTVVSVSDDCDSTGGGGTLQIWRMSDLIYRPQDEVLAELEKFK  299 (309)
Q Consensus       221 ~-~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~s~d~~s~~~dg~v~vw~~~~~~~~~~~~~~~~~~~h~  299 (309)
                      . ..          ....  ..+...+..+++++++..+++ .  +       +.|.+|+..       ++.+..+..+.
T Consensus       206 ~~~~----------~~~~--~~~~~~p~~i~~d~~G~l~v~-~--~-------~~v~~~~~~-------g~~~~~~~~~~  256 (296)
T 3e5z_A          206 TEYQ----------GVHF--TVEPGKTDGLRVDAGGLIWAS-A--G-------DGVHVLTPD-------GDELGRVLTPQ  256 (296)
T ss_dssp             EEEE----------EEEE--CCSSSCCCSEEEBTTSCEEEE-E--T-------TEEEEECTT-------SCEEEEEECSS
T ss_pred             CcCC----------CeEe--eCCCCCCCeEEECCCCCEEEE-c--C-------CeEEEECCC-------CCEEEEEECCC
Confidence            1 00          0111  234556788999998875443 2  2       789999975       34445555455


Q ss_pred             ceEEEeee
Q 021657          300 AHVISCTS  307 (309)
Q Consensus       300 ~~v~~~~~  307 (309)
                      . +.+++|
T Consensus       257 ~-~~~~~f  263 (296)
T 3e5z_A          257 T-TSNLCF  263 (296)
T ss_dssp             C-CCEEEE
T ss_pred             C-ceeEEE
Confidence            5 666666

>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A

Probab=99.72  E-value=2.4e-14  Score=110.63  Aligned_cols=233  Identities=9%  Similarity=-0.024  Sum_probs=148.3

Q ss_pred             eEEEEECCCCCEEE-EecCCCcEEEEeCCccccccccC----CccccccCCCCceeecCCCCCCCCcccCCCCCcCcccc
Q 021657           12 EFALAMCPTEPYVL-SGGKDKSVVLWSIQDHITSSATD----PATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGI   86 (309)
Q Consensus        12 V~~~~~~~~~~~l~-t~~~dg~i~vwd~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   86 (309)
                      ..+++++++|++++ +.+.++.|.+||..+........    ............+.... .  .+.+..++.........
T Consensus        26 p~~i~~~~~g~l~v~~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~~i~~~~~g~l~v~~-~--~~~i~~~d~~~~~~~~~  102 (270)
T 1rwi_B           26 PSGVAVDSAGNVYVTSEGMYGRVVKLATGSTGTTVLPFNGLYQPQGLAVDGAGTVYVTD-F--NNRVVTLAAGSNNQTVL  102 (270)
T ss_dssp             EEEEEECTTCCEEEEECSSSCEEEEECC-----EECCCCSCCSCCCEEECTTCCEEEEE-T--TTEEEEECTTCSCCEEC
T ss_pred             ccceEECCCCCEEEEccCCCCcEEEecCCCcccceEeeCCcCCcceeEECCCCCEEEEc-C--CCEEEEEeCCCceEeee
Confidence            57999999999777 55788999999986653221111    11111112222222211 1  44566666554433222


Q ss_pred             cccccCCeEEEEEecCCCcEEEEEcCCCeEEEEEcCCCCcceEEEeeccCCceeEEEeccCCCCeEEEEcCCCcEEEEec
Q 021657           87 YNGHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDR  166 (309)
Q Consensus        87 ~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~  166 (309)
                      .......+.++++.+++ .++++...++.|.+|+..+..  ...........+.++++++ +++++++...++.|.+||.
T Consensus       103 ~~~~~~~p~~i~~~~~g-~l~v~~~~~~~i~~~~~~~~~--~~~~~~~~~~~p~~i~~~~-~g~l~v~~~~~~~i~~~~~  178 (270)
T 1rwi_B          103 PFDGLNYPEGLAVDTQG-AVYVADRGNNRVVKLAAGSKT--QTVLPFTGLNDPDGVAVDN-SGNVYVTDTDNNRVVKLEA  178 (270)
T ss_dssp             CCCSCSSEEEEEECTTC-CEEEEEGGGTEEEEECTTCCS--CEECCCCSCCSCCCEEECT-TCCEEEEEGGGTEEEEECT
T ss_pred             ecCCcCCCcceEECCCC-CEEEEECCCCEEEEEECCCce--eEeeccccCCCceeEEEeC-CCCEEEEECCCCEEEEEec
Confidence            12233568999999988 677777778899999865444  2222223334678999999 8888888777889999998


Q ss_pred             CCCCCCCCCCceeeeccCCCCeeEEEEecCCCcEEEEecCCCcEEEEeCCcccccccCCCCCcCCCCceeeeecCCCcce
Q 021657          167 RNLTSNGVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKV  246 (309)
Q Consensus       167 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v  246 (309)
                      ..      .............+..|+++++|. ++++...++.|.+|+......               ......+...+
T Consensus       179 ~~------~~~~~~~~~~~~~p~~i~~d~~g~-l~v~~~~~~~v~~~~~~~~~~---------------~~~~~~~~~~p  236 (270)
T 1rwi_B          179 ES------NNQVVLPFTDITAPWGIAVDEAGT-VYVTEHNTNQVVKLLAGSTTS---------------TVLPFTGLNTP  236 (270)
T ss_dssp             TT------CCEEECCCSSCCSEEEEEECTTCC-EEEEETTTSCEEEECTTCSCC---------------EECCCCSCSCE
T ss_pred             CC------CceEeecccCCCCceEEEECCCCC-EEEEECCCCcEEEEcCCCCcc---------------eeeccCCCCCc
Confidence            76      433332223336688999999995 677777788999999865111               11111233568


Q ss_pred             eeEEEccCCCeEEEEecCCCCCCCCCCeEEEEEcc
Q 021657          247 VDFHWNASDPWTVVSVSDDCDSTGGGGTLQIWRMS  281 (309)
Q Consensus       247 ~~~~~~~~~~~~~~s~s~d~~s~~~dg~v~vw~~~  281 (309)
                      .+++++|++. ++++.+.+       +.|+++++.
T Consensus       237 ~~i~~~~~g~-l~v~~~~~-------~~v~~~~~~  263 (270)
T 1rwi_B          237 LAVAVDSDRT-VYVADRGN-------DRVVKLTSL  263 (270)
T ss_dssp             EEEEECTTCC-EEEEEGGG-------TEEEEECCC
T ss_pred             eeEEECCCCC-EEEEECCC-------CEEEEEcCC
Confidence            8999999886 66655555       899999998

>2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus}

Probab=99.70  E-value=2.2e-15  Score=131.84  Aligned_cols=202  Identities=9%  Similarity=-0.008  Sum_probs=132.6

Q ss_pred             CCCCcceEEEEECCCCCEEE-----EecCCCcEEEEeCCccccccccCCccccccCCCCceeecCCCCCCCCcccCCCCC
Q 021657            6 GHQDNAEFALAMCPTEPYVL-----SGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPS   80 (309)
Q Consensus         6 ~H~~~~V~~~~~~~~~~~l~-----t~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (309)
                      +|.. .+.+++|||||++||     .|+.+..|++||+.++.....                                  
T Consensus       118 ~~~~-~~~~~~~SPDG~~la~~~~~~G~~~~~i~v~dl~tg~~~~~----------------------------------  162 (695)
T 2bkl_A          118 DGTV-SLGTWAVSWDGKKVAFAQKPNAADEAVLHVIDVDSGEWSKV----------------------------------  162 (695)
T ss_dssp             SSCE-EEEEEEECTTSSEEEEEEEETTCSCCEEEEEETTTCCBCSS----------------------------------
T ss_pred             CCCE-EEEEEEECCCCCEEEEEECCCCCceEEEEEEECCCCCCcCC----------------------------------
Confidence            5665 789999999999998     555667999999986432100                                  


Q ss_pred             cCcccccccccCCeEEEEEecCCCcEEEEEcCCCe-------------EEEEEcCCCCcc--eEEEeeccCCceeEEEec
Q 021657           81 VGPRGIYNGHEDTVEDVTFCPSSAQEFCSVGDDSC-------------LILWDARVGTSP--VIKVEKAHDADLHCVDWN  145 (309)
Q Consensus        81 ~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~-------------i~iwd~~~~~~~--~~~~~~~~~~~v~~~~~~  145 (309)
                          ..+...  ....++|+|+| +.|+.++.|..             |++|++.++...  .+.....+...+..+.|+
T Consensus       163 ----~~~~~~--~~~~~~wspDg-~~l~~~~~d~~~~~~~~~~~~~~~v~~~~l~t~~~~~~lv~~~~~~~~~~~~~~~S  235 (695)
T 2bkl_A          163 ----DVIEGG--KYATPKWTPDS-KGFYYEWLPTDPSIKVDERPGYTTIRYHTLGTEPSKDTVVHERTGDPTTFLQSDLS  235 (695)
T ss_dssp             ----CCBSCC--TTCCCEECTTS-SEEEEEECCCCTTSCGGGGGGGCEEEEEETTSCGGGCEEEECCCCCTTCEEEEEEC
T ss_pred             ----cccCcc--cccceEEecCC-CEEEEEEecCCCCCccccCCCCCEEEEEECCCCchhceEEEecCCCCEEEEEEEEC
Confidence                001111  12578999999 66777777665             999999877632  222233455678899999


Q ss_pred             cCCCCeEEEEcCCC----cEEEEecCCCCCCCCCCceeeeccCCCCeeEEEEecCCCcEEEEec---CCCcEEEEeCCcc
Q 021657          146 PLDDNLILTGSADN----SVRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSA---EDGLLNIWDYEKV  218 (309)
Q Consensus       146 ~~~~~~l~~~~~dg----~i~i~d~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~---~dg~i~iwd~~~~  218 (309)
                      | ++++|+..+.++    .|+++|..+      +. ...+..+...+....+ ++|. +++...   .++.|.+||+...
T Consensus       236 p-DG~~l~~~~~~~~~~~~l~~~~~~~------~~-~~~l~~~~~~~~~~~~-~~g~-l~~~s~~~~~~~~l~~~d~~~~  305 (695)
T 2bkl_A          236 R-DGKYLFVYILRGWSENDVYWKRPGE------KD-FRLLVKGVGAKYEVHA-WKDR-FYVLTDEGAPRQRVFEVDPAKP  305 (695)
T ss_dssp             T-TSCCEEEEEEETTTEEEEEEECTTC------SS-CEEEEECSSCCEEEEE-ETTE-EEEEECTTCTTCEEEEEBTTBC
T ss_pred             C-CCCEEEEEEeCCCCceEEEEEcCCC------Cc-eEEeecCCCceEEEEe-cCCc-EEEEECCCCCCCEEEEEeCCCC
Confidence            9 899888877665    677776543      33 3444445555566666 6777 665655   3588999998762


Q ss_pred             cccccCCCCCcCCCCceeeeec-CC-CcceeeEEEccCCCeEEEEecCCCCCCCCCCeEEEEEcc
Q 021657          219 GKKVEQGPRTTNYPAGLFFQHA-GH-RDKVVDFHWNASDPWTVVSVSDDCDSTGGGGTLQIWRMS  281 (309)
Q Consensus       219 ~~~~~~~~~~~~~~~~~~~~~~-~~-~~~v~~~~~~~~~~~~~~s~s~d~~s~~~dg~v~vw~~~  281 (309)
                      ...             ....+. .+ ...+..++|+  +..++++.+.|       +..+||.+.
T Consensus       306 ~~~-------------~~~~l~~~~~~~~l~~~~~~--~~~lv~~~~~d-------g~~~l~~~~  348 (695)
T 2bkl_A          306 ARA-------------SWKEIVPEDSSASLLSVSIV--GGHLSLEYLKD-------ATSEVRVAT  348 (695)
T ss_dssp             SGG-------------GCEEEECCCSSCEEEEEEEE--TTEEEEEEEET-------TEEEEEEEE
T ss_pred             Ccc-------------CCeEEecCCCCCeEEEEEEE--CCEEEEEEEEC-------CEEEEEEEe
Confidence            210             011122 22 4567888887  55778877766       888888775

>4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ...

Probab=99.69  E-value=2e-15  Score=133.05  Aligned_cols=206  Identities=10%  Similarity=0.118  Sum_probs=131.0

Q ss_pred             EEEEECCCCCEEEEecCC---------CcEEEEeCCccccccccCCccccccCCCCceeecCCCCCCCCcccCCCCCcCc
Q 021657           13 FALAMCPTEPYVLSGGKD---------KSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGP   83 (309)
Q Consensus        13 ~~~~~~~~~~~l~t~~~d---------g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   83 (309)
                      ..++|||||++|+.++.+         +.+.+||+.++.                                         
T Consensus        65 ~~~~~Spdg~~l~~~~~~~~~~r~~~~~~~~~~d~~~~~-----------------------------------------  103 (740)
T 4a5s_A           65 NDYSISPDGQFILLEYNYVKQWRHSYTASYDIYDLNKRQ-----------------------------------------  103 (740)
T ss_dssp             CEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEETTTTE-----------------------------------------
T ss_pred             cceEECCCCCEEEEEECCeeeEEEccceEEEEEECCCCc-----------------------------------------
Confidence            347899999999998876         556799987542                                         


Q ss_pred             ccccccccCCeEEEEEecCCCcEEEEEcCCCeEEEEEcCCCCcceEEEeeccCCce-----------------eEEEecc
Q 021657           84 RGIYNGHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADL-----------------HCVDWNP  146 (309)
Q Consensus        84 ~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v-----------------~~~~~~~  146 (309)
                      ...+..|...+...+|+|+| +.||.+ .++.|++||+.+++. ......++...+                 ..+.|+|
T Consensus       104 ~~~l~~~~~~~~~~~~SPdG-~~la~~-~~~~i~~~~~~~~~~-~~lt~~g~~~~~~~g~~~~v~~ee~~~~~~~~~wSp  180 (740)
T 4a5s_A          104 LITEERIPNNTQWVTWSPVG-HKLAYV-WNNDIYVKIEPNLPS-YRITWTGKEDIIYNGITDWVYEEEVFSAYSALWWSP  180 (740)
T ss_dssp             ECCSSCCCTTEEEEEECSST-TCEEEE-ETTEEEEESSTTSCC-EECCSCCBTTTEEESBCCHHHHHHTSSSSBCEEECT
T ss_pred             EEEcccCCCcceeeEECCCC-CEEEEE-ECCeEEEEECCCCce-EEEcCCCCccceecCcccccccchhcCCCcceEECC
Confidence            12244566789999999999 667766 468999999987762 122222322222                 3589999


Q ss_pred             CCCCeEEEEcCCC------------------------------------cEEEEecCC---CCCCCCCCceeeec-----
Q 021657          147 LDDNLILTGSADN------------------------------------SVRMFDRRN---LTSNGVGSPINKFE-----  182 (309)
Q Consensus       147 ~~~~~l~~~~~dg------------------------------------~i~i~d~~~---~~~~~~~~~~~~~~-----  182 (309)
                       +++.|+.++.|.                                    .|++||+.+   ..    ......+.     
T Consensus       181 -Dg~~la~~~~d~~~v~~~~~~~~~~~~~~~~~~~~~~yp~~G~~~~~~~l~v~d~~~~~~~~----~~~~~~l~~~~~~  255 (740)
T 4a5s_A          181 -NGTFLAYAQFNDTEVPLIEYSFYSDESLQYPKTVRVPYPKAGAVNPTVKFFVVNTDSLSSVT----NATSIQITAPASM  255 (740)
T ss_dssp             -TSSEEEEEEEECTTCCEEEEEECCSTTCSSCEEEEEECCBTTSCCCEEEEEEEETTSCCSSS----CCCEEEECCCHHH
T ss_pred             -CCCEEEEEEEcccCCceEEEEeecCCCCCCCcceeecCCCCcCcCCeeEEEEEECCCCCCCC----cceEEEecCCccC
Confidence             999988875332                                    366777765   21    00222333     


Q ss_pred             -cCCCCeeEEEEecCCCcEEEEe---cCCCcEEEEeCCcccc---cccCCCCCcCCCCceeeeecCCCccee-----eEE
Q 021657          183 -GHSAAVLCVQWSPDKSSVFGSS---AEDGLLNIWDYEKVGK---KVEQGPRTTNYPAGLFFQHAGHRDKVV-----DFH  250 (309)
Q Consensus       183 -~~~~~v~~~~~~~~~~~l~~~~---~~dg~i~iwd~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~v~-----~~~  250 (309)
                       ++...+..++|+|||+.++...   ..+..|.+||+.....   ...         ...+ ...+|...|.     .+.
T Consensus       256 ~~~~~~~~~~~wspdg~~~~~~~~r~~~~~~i~~~d~~tg~~~~~~~~---------~~~l-~~~~~~~~v~~~~~~~p~  325 (740)
T 4a5s_A          256 LIGDHYLCDVTWATQERISLQWLRRIQNYSVMDICDYDESSGRWNCLV---------ARQH-IEMSTTGWVGRFRPSEPH  325 (740)
T ss_dssp             HTSCEEEEEEEEEETTEEEEEEEESSTTEEEEEEEEEETTTTEEEECG---------GGCE-EEECSSSCSSSSSCCCCE
T ss_pred             CCCCeEEEEEEEeCCCeEEEEEeCCCCCEEEEEEEECCCCccccceeE---------EEEe-eeccCCceEccCcCCCce
Confidence             2667789999999998543332   2234799999887220   000         0000 1134555544     789


Q ss_pred             EccCCCeEEEEecCCCCCCCCCCeEEEEEcc
Q 021657          251 WNASDPWTVVSVSDDCDSTGGGGTLQIWRMS  281 (309)
Q Consensus       251 ~~~~~~~~~~s~s~d~~s~~~dg~v~vw~~~  281 (309)
                      |+|++..++...|++  .  ....|++|++.
T Consensus       326 fspDG~~l~~~~s~~--~--G~~~l~~~~~~  352 (740)
T 4a5s_A          326 FTLDGNSFYKIISNE--E--GYRHICYFQID  352 (740)
T ss_dssp             ECTTSSEEEEEEECT--T--SCEEEEEEETT
T ss_pred             EcCCCCEEEEEEEcC--C--CceEEEEEECC
Confidence            999999877455543  2  24678888876

>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*

Probab=99.69  E-value=7.1e-16  Score=123.65  Aligned_cols=140  Identities=10%  Similarity=0.028  Sum_probs=100.3

Q ss_pred             CCCCCcccCCCCCcCccccccccc-CCeEEEEEecCCCcEEEEEcCCCeEEEEEcCCCCcceEEEeecc------CCcee
Q 021657           68 PGDGNDKAADGPSVGPRGIYNGHE-DTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPVIKVEKAH------DADLH  140 (309)
Q Consensus        68 ~~~~~~~~~~~~~~~~~~~~~~~~-~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~------~~~v~  140 (309)
                      ..++.+.+|+..+.+.+..+..+. ..+..++|+|++..+++++..++.|.+||+.+++  ....+...      ...+.
T Consensus        18 ~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~~~~i~~~d~~t~~--~~~~~~~~~~~~~~~~~~~   95 (349)
T 1jmx_B           18 NYPNNLHVVDVASDTVYKSCVMPDKFGPGTAMMAPDNRTAYVLNNHYGDIYGIDLDTCK--NTFHANLSSVPGEVGRSMY   95 (349)
T ss_dssp             ETTTEEEEEETTTTEEEEEEECSSCCSSCEEEECTTSSEEEEEETTTTEEEEEETTTTE--EEEEEESCCSTTEEEECSS
T ss_pred             CCCCeEEEEECCCCcEEEEEecCCCCCCceeEECCCCCEEEEEeCCCCcEEEEeCCCCc--EEEEEEccccccccccccc
Confidence            346778888888887776665443 2578899999995566777789999999998776  44443322      22378


Q ss_pred             EEEeccCCCCeEEEEcCC------------CcEEEEecCCCCCCCCCCceeeeccCCCCeeEEEEecCCCcEEEEecCCC
Q 021657          141 CVDWNPLDDNLILTGSAD------------NSVRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAEDG  208 (309)
Q Consensus       141 ~~~~~~~~~~~l~~~~~d------------g~i~i~d~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~dg  208 (309)
                      .++|+| +++++++++.+            +.|.+||+.+...   .+.+..+. +...+.+++|+|+++ +++ ++  +
T Consensus        96 ~~~~sp-dg~~l~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~---~~~~~~~~-~~~~~~~~~~s~dg~-l~~-~~--~  166 (349)
T 1jmx_B           96 SFAISP-DGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLE---AKPVRTFP-MPRQVYLMRAADDGS-LYV-AG--P  166 (349)
T ss_dssp             CEEECT-TSSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGG---BCCSEEEE-CCSSCCCEEECTTSC-EEE-ES--S
T ss_pred             ceEECC-CCCEEEEEcccccccccccccCCCeEEEEECCCccc---cceeeecc-CCCcccceeECCCCc-EEE-cc--C
Confidence            999999 99999988865            8999999987211   12223333 334688999999999 665 43  3


Q ss_pred             cEEEEeCCcc
Q 021657          209 LLNIWDYEKV  218 (309)
Q Consensus       209 ~i~iwd~~~~  218 (309)
                      .|.+||+...
T Consensus       167 ~i~~~d~~~~  176 (349)
T 1jmx_B          167 DIYKMDVKTG  176 (349)
T ss_dssp             SEEEECTTTC
T ss_pred             cEEEEeCCCC
Confidence            4999999763

>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A

Probab=99.69  E-value=3.4e-15  Score=130.14  Aligned_cols=195  Identities=10%  Similarity=0.058  Sum_probs=124.9

Q ss_pred             CCCcceEEEEECCCCCEEEEecCC----------CcEEEEeCCccccccccCCccccccCCCCceeecCCCCCCCCcccC
Q 021657            7 HQDNAEFALAMCPTEPYVLSGGKD----------KSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAA   76 (309)
Q Consensus         7 H~~~~V~~~~~~~~~~~l~t~~~d----------g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   76 (309)
                      |.. .+..++|+|||++|++++.|          ..|++||+.+....                                
T Consensus       128 ~~~-~~~~~~~spDg~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~--------------------------------  174 (662)
T 3azo_A          128 GGL-RWADPVLLPERGEVWCMAEEFTGEGPSDVRRFLAAVPLDGSAAA--------------------------------  174 (662)
T ss_dssp             TCE-EEEEEEEETTTTEEEEEEEEECSSSTTCEEEEEEEEETTSTTTT--------------------------------
T ss_pred             CCc-cccCcEECCCCCEEEEEEecccCCCCCCceeEEEEEECCCCccc--------------------------------
Confidence            555 68899999999999988877          58999998741000                                


Q ss_pred             CCCCcCcccccc-cccCCeEEEEEecCCCcEEEEEcCC--------CeEEEEEcC-CCCc-ceEEEeeccCCceeEEEec
Q 021657           77 DGPSVGPRGIYN-GHEDTVEDVTFCPSSAQEFCSVGDD--------SCLILWDAR-VGTS-PVIKVEKAHDADLHCVDWN  145 (309)
Q Consensus        77 ~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~~l~s~~~d--------g~i~iwd~~-~~~~-~~~~~~~~~~~~v~~~~~~  145 (309)
                        ... ....+. .+...+..++|+|+| +.|+.++.+        ..|++||+. ++.. ........+...+..+.|+
T Consensus       175 --~~~-~~~~l~~~~~~~~~~~~~SpDG-~~la~~~~~~~~~~~~~~~i~~~d~~~~g~~~~~~~l~~~~~~~~~~~~~s  250 (662)
T 3azo_A          175 --DRS-AVRELSDDAHRFVTGPRLSPDG-RQAVWLAWDHPRMPWEGTELKTARVTEDGRFADTRTLLGGPEEAIAQAEWA  250 (662)
T ss_dssp             --CGG-GSEESSCSCSSEECCCEECTTS-SEEEEEEECTTCCTTTCEEEEEEEECTTSCEEEEEEEEEETTBCEEEEEEC
T ss_pred             --cCC-ceeEEEecCCCcccCceECCCC-CEEEEEECCCCCCCCCCcEEEEEEECCCCcccccEEeCCCCCceEcceEEC
Confidence              000 112222 344567888999999 666665543        479999998 4521 1333444556789999999


Q ss_pred             cCCCCeEEEEcCCC--cEEEEecCCCCCCCCCCceeeeccCCCC--------eeEEEEecCCCcEEEEecCCCcEEEEeC
Q 021657          146 PLDDNLILTGSADN--SVRMFDRRNLTSNGVGSPINKFEGHSAA--------VLCVQWSPDKSSVFGSSAEDGLLNIWDY  215 (309)
Q Consensus       146 ~~~~~~l~~~~~dg--~i~i~d~~~~~~~~~~~~~~~~~~~~~~--------v~~~~~~~~~~~l~~~~~~dg~i~iwd~  215 (309)
                      | ++++++++..++  .|.+||+.+      ++.......+...        +..++|+|++. +++++.. +.++||.+
T Consensus       251 p-dg~l~~~~~~~~~~~l~~~~~~~------~~~~~l~~~~~~~~~p~w~~~~~~~~~~~~~~-~~~~~~~-~~~~l~~~  321 (662)
T 3azo_A          251 P-DGSLIVATDRTGWWNLHRVDPAT------GAATQLCRREEEFAGPLWTPGMRWFAPLANGL-IAVVHGK-GAAVLGIL  321 (662)
T ss_dssp             T-TSCEEEEECTTSSCEEEEECTTT------CCEEESSCCSSBSSCCCCSTTCCSEEECTTSC-EEEEEBS-SSCEEEEE
T ss_pred             C-CCeEEEEECCCCCeEEEEEECCC------CceeecccccccccCccccccCceEeEeCCCE-EEEEEEc-CccEEEEE
Confidence            9 888888888888  566666654      4433322222211        56789999988 5668887 99999955


Q ss_pred             CcccccccCCCCCcCCCCceeeeecCCCcceeeEEEccCCCeEEEEe
Q 021657          216 EKVGKKVEQGPRTTNYPAGLFFQHAGHRDKVVDFHWNASDPWTVVSV  262 (309)
Q Consensus       216 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~  262 (309)
                      ...+              ..+..+..|...+..+ |++++..+++++
T Consensus       322 d~~~--------------~~~~~l~~~~~~~~~~-~s~~~~~~~~~~  353 (662)
T 3azo_A          322 DPES--------------GELVDAAGPWTEWAAT-LTVSGTRAVGVA  353 (662)
T ss_dssp             ETTT--------------TEEEECCSSCCEEEEE-EEEETTEEEEEE
T ss_pred             ECCC--------------CcEEEecCCCCeEEEE-EecCCCEEEEEE
Confidence            4311              1133445566667666 144555555443

>2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus}

Probab=99.68  E-value=7e-15  Score=117.89  Aligned_cols=205  Identities=10%  Similarity=0.156  Sum_probs=127.8

Q ss_pred             ceEEEEECCCCCEEEEecCC---Cc--EEEEeCCccccccccCCccccccCCCCceeecCCCCCCCCcccCCCCCcCccc
Q 021657           11 AEFALAMCPTEPYVLSGGKD---KS--VVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRG   85 (309)
Q Consensus        11 ~V~~~~~~~~~~~l~t~~~d---g~--i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   85 (309)
                      .+..++|+|||++|+..+.+   +.  |.+|++.++.                                        .. 
T Consensus        60 ~~~~~~~SpDg~~la~~~~~~~~~~~~l~~~~~~~g~----------------------------------------~~-   98 (347)
T 2gop_A           60 NATMPRISPDGKKIAFMRANEEKKVSEIWVADLETLS----------------------------------------SK-   98 (347)
T ss_dssp             SCEEEEECTTSSEEEEEEEETTTTEEEEEEEETTTTE----------------------------------------EE-
T ss_pred             cCCCeEECCCCCEEEEEEeccCCCcceEEEEECCCCc----------------------------------------eE-
Confidence            46789999999999877654   33  6667765321                                        11 


Q ss_pred             ccccccCCeEEEEEecCCCcEEEEEcC---------------------------CCeEEEEEcCCCCcceEEEeeccCCc
Q 021657           86 IYNGHEDTVEDVTFCPSSAQEFCSVGD---------------------------DSCLILWDARVGTSPVIKVEKAHDAD  138 (309)
Q Consensus        86 ~~~~~~~~v~~~~~~~~~~~~l~s~~~---------------------------dg~i~iwd~~~~~~~~~~~~~~~~~~  138 (309)
                      .+..+.. +..+.|+|+| +.|+.++.                           ...|.+||+.+++  ....+.. . .
T Consensus        99 ~l~~~~~-~~~~~wspdg-~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~--~~~~l~~-~-~  172 (347)
T 2gop_A           99 KILEAKN-IRSLEWNEDS-RKLLIVGFKRREDEDFIFEDDVPAWFDDLGFFDGEKTTFWIFDTESEE--VIEEFEK-P-R  172 (347)
T ss_dssp             EEEEESE-EEEEEECTTS-SEEEEEEECCCC---------CCCC---------CEEEEEEEETTTTE--EEEEEEE-E-T
T ss_pred             EEEcCCC-ccceeECCCC-CEEEEEEccCCCcCCcEEEcccceeecCcccccCccceEEEEECCCCe--EEeeecC-C-C
Confidence            1222233 8999999999 55555542                           2579999998776  3133333 3 7


Q ss_pred             eeEEEeccCCCCeEEEEcCCC-------cEEEEecCCCCCCCCCCceeeeccCCCCeeEEEEecCCCcEEEEecCC----
Q 021657          139 LHCVDWNPLDDNLILTGSADN-------SVRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAED----  207 (309)
Q Consensus       139 v~~~~~~~~~~~~l~~~~~dg-------~i~i~d~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~d----  207 (309)
                      +..++|+| ++ +++++..++       ...+|.+.+      ++.. .+..+ ..+..+  +|+|++++..+..+    
T Consensus       173 ~~~~~~sp-dg-~~~~~~~~~~~~~~~~~~~l~~~d~------~~~~-~l~~~-~~~~~~--spdg~~l~~~~~~~~~~~  240 (347)
T 2gop_A          173 FSSGIWHR-DK-IVVNVPHREIIPQYFKFWDIYIWED------GKEE-KMFEK-VSFYAV--DSDGERILLYGKPEKKYM  240 (347)
T ss_dssp             TCEEEEET-TE-EEEEEECCCSSCCSSCCEEEEEEET------TEEE-EEEEE-ESEEEE--EECSSCEEEEECCSSSCC
T ss_pred             cccccCCC-Ce-EEEEEecccccccccccccEEEeCC------CceE-EeccC-cceeeE--CCCCCEEEEEEccccCCc
Confidence            88999999 88 777775542       344554443      4432 33333 445444  99999865444332    


Q ss_pred             ---CcEEEEeCCcccccccCCCCCcCCCCceeeeecCCCcceee-EEEccCCCeEEEEecCCCCCCCCCCeEEEEEcccc
Q 021657          208 ---GLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKVVD-FHWNASDPWTVVSVSDDCDSTGGGGTLQIWRMSDL  283 (309)
Q Consensus       208 ---g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~-~~~~~~~~~~~~s~s~d~~s~~~dg~v~vw~~~~~  283 (309)
                         ..|.+||  . ++              .......+...+.. +.|+ ++  ++++++.+       +.++|| +.  
T Consensus       241 ~~~~~l~~~d--~-~~--------------~~~l~~~~~~~~~~~~~~s-dg--~~~~~~~~-------~~~~l~-~~--  290 (347)
T 2gop_A          241 SEHNKLYIYD--G-KE--------------VMGILDEVDRGVGQAKIKD-GK--VYFTLFEE-------GSVNLY-IW--  290 (347)
T ss_dssp             CSSCEEEEEC--S-SC--------------EEESSTTCCSEEEEEEEET-TE--EEEEEEET-------TEEEEE-EE--
T ss_pred             cccceEEEEC--C-Cc--------------eEeccccCCcccCCccEEc-Cc--EEEEEecC-------CcEEEE-Ec--
Confidence               4677787  2 21              11222345667776 8999 66  66666655       899999 87  


Q ss_pred             ccCChhhHhHhhhcccceEEEeeeCC
Q 021657          284 IYRPQDEVLAELEKFKAHVISCTSKP  309 (309)
Q Consensus       284 ~~~~~~~~~~~~~~h~~~v~~~~~~P  309 (309)
                          .++. ..+..+.+.|.+++|+|
T Consensus       291 ----~g~~-~~~~~~~~~v~~~~~s~  311 (347)
T 2gop_A          291 ----DGEI-KPIAKGRHWIMGFDVDE  311 (347)
T ss_dssp             ----SSSE-EEEECSSSEEEEEEESS
T ss_pred             ----CCce-EEEecCCCeEEeeeeeC
Confidence                2222 23334577888888876

>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1

Probab=99.68  E-value=1.1e-14  Score=117.56  Aligned_cols=161  Identities=7%  Similarity=0.073  Sum_probs=110.6

Q ss_pred             CCeEEEEEecCCCcEEEEEcCCCeEEEEEcC-CCCcceEEEeec-cCCceeEEEeccCCCCe--EEEEc-----------
Q 021657           92 DTVEDVTFCPSSAQEFCSVGDDSCLILWDAR-VGTSPVIKVEKA-HDADLHCVDWNPLDDNL--ILTGS-----------  156 (309)
Q Consensus        92 ~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~-~~~~~~~~~~~~-~~~~v~~~~~~~~~~~~--l~~~~-----------  156 (309)
                      ..+..++|+|++ ++|++++.+ .|.+|++. +++  ....... ....+..++|+| ++++  ++++.           
T Consensus        40 ~~~~~~a~spdg-~~l~~~~~~-~v~~~~~~~~g~--~~~~~~~~~~g~~~~~~~sp-dg~~l~~~~~~~~~~~~~~~~~  114 (365)
T 1jof_A           40 EPISWMTFDHER-KNIYGAAMK-KWSSFAVKSPTE--IVHEASHPIGGHPRANDADT-NTRAIFLLAAKQPPYAVYANPF  114 (365)
T ss_dssp             CCCSEEEECTTS-SEEEEEEBT-EEEEEEEEETTE--EEEEEEEECCSSGGGGCTTS-CCEEEEEEECSSTTCCEEEEEE
T ss_pred             CCCcEEEECCCC-CEEEEEccc-eEEEEEECCCCC--EEEeeEeecCCCCccEEECC-CCCEEEEEEecCCcceecccee
Confidence            467889999999 677777777 99999997 555  2222211 112366789999 8884  45553           


Q ss_pred             --CCCcEEEEecCCCCCCCCCCceeeec----cCCCCeeEEEEecCCCcEEEEecCCCcEEEEeCCcccccccCCCCCcC
Q 021657          157 --ADNSVRMFDRRNLTSNGVGSPINKFE----GHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTN  230 (309)
Q Consensus       157 --~dg~i~i~d~~~~~~~~~~~~~~~~~----~~~~~v~~~~~~~~~~~l~~~~~~dg~i~iwd~~~~~~~~~~~~~~~~  230 (309)
                        .+|.+.+|++...     ++....+.    .+...+..++|+|+|++++++...++.|++||+...++.         
T Consensus       115 ~~~~g~v~v~~~~~~-----g~~~~~~~~~~~~~~~~~~~~~~spdG~~l~~~~~~~~~v~~~~~~~~g~~---------  180 (365)
T 1jof_A          115 YKFAGYGNVFSVSET-----GKLEKNVQNYEYQENTGIHGMVFDPTETYLYSADLTANKLWTHRKLASGEV---------  180 (365)
T ss_dssp             SSSCCEEEEEEECTT-----CCEEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCE---------
T ss_pred             ecCCceEEEEccCCC-----CcCcceEeeEEeCCCCcceEEEECCCCCEEEEEcCCCCEEEEEEECCCCCE---------
Confidence              6899999999742     44333332    245678999999999987655555789999999721221         


Q ss_pred             CCCceeeeec--CCCcceeeEEEccCCCeEEEEecCCCCCCCCCCeEEEEEcc
Q 021657          231 YPAGLFFQHA--GHRDKVVDFHWNASDPWTVVSVSDDCDSTGGGGTLQIWRMS  281 (309)
Q Consensus       231 ~~~~~~~~~~--~~~~~v~~~~~~~~~~~~~~s~s~d~~s~~~dg~v~vw~~~  281 (309)
                         ..+....  .|...+..++|+|++.+++++...+       +.|.+|++.
T Consensus       181 ---~~~~~~~~~~~g~~p~~~~~spdg~~l~v~~~~~-------~~v~v~~~~  223 (365)
T 1jof_A          181 ---ELVGSVDAPDPGDHPRWVAMHPTGNYLYALMEAG-------NRICEYVID  223 (365)
T ss_dssp             ---EEEEEEECSSTTCCEEEEEECTTSSEEEEEETTT-------TEEEEEEEC
T ss_pred             ---EEeeeEecCCCCCCCCEeEECCCCCEEEEEECCC-------CeEEEEEEe
Confidence               1112222  2456789999999999887655444       899999886

>1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C*

Probab=99.66  E-value=9e-15  Score=117.05  Aligned_cols=194  Identities=9%  Similarity=0.025  Sum_probs=131.5

Q ss_pred             ceEEEEECCCCCEEEEecCCCcEEEEeCCccccccccCCccccccCCCCceeecCCCCCCCCcccCCCCCcCcccccccc
Q 021657           11 AEFALAMCPTEPYVLSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGH   90 (309)
Q Consensus        11 ~V~~~~~~~~~~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   90 (309)
                      .++.+++++...++++|+.+ .+++|+++..........                             ...++. ....+
T Consensus        39 ~~nlLais~~~gll~a~~~~-~l~v~~~~~l~~~~~~~~-----------------------------~~~~~~-~~~~l   87 (388)
T 1xip_A           39 SLQNLDISNSKSLFVAASGS-KAVVGELQLLRDHITSDS-----------------------------TPLTFK-WEKEI   87 (388)
T ss_dssp             CCBCEEEETTTTEEEEEETT-EEEEEEHHHHHHHHHSSS-----------------------------CCCCCS-EEEEC
T ss_pred             cccEEEEcCCCCEEEEeCCC-EEEEEEhhHhhhhhcccc-----------------------------ccccce-EEeeC
Confidence            47899999999999999998 555699875421111000                             001111 12235


Q ss_pred             cCCeEEEEEecCCCcEEEEEcCCCeEEEEEcCCCCcceEEEeeccCCceeEEEeccCCCCeEEEEcCCCcEEEEecCCCC
Q 021657           91 EDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLT  170 (309)
Q Consensus        91 ~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~  170 (309)
                      .. |+.++|  ++ ..|+++ .++.|++||+++..  .......+...+.++.+.+ .  .++++..||.|.+||+.+  
T Consensus        88 p~-V~~l~f--d~-~~L~v~-~~~~l~v~dv~sl~--~~~~~~~~~~~v~~i~~~~-p--~~av~~~dG~L~v~dl~~--  155 (388)
T 1xip_A           88 PD-VIFVCF--HG-DQVLVS-TRNALYSLDLEELS--EFRTVTSFEKPVFQLKNVN-N--TLVILNSVNDLSALDLRT--  155 (388)
T ss_dssp             TT-EEEEEE--ET-TEEEEE-ESSEEEEEESSSTT--CEEEEEECSSCEEEEEECS-S--EEEEEETTSEEEEEETTT--
T ss_pred             CC-eeEEEE--CC-CEEEEE-cCCcEEEEEchhhh--ccCccceeecceeeEEecC-C--CEEEEECCCCEEEEEccC--
Confidence            56 999999  66 778887 88999999998776  3445567778888888766 3  288889999999999997  


Q ss_pred             CCCCCCceeeeccCCCCeeEEEEecCCCcEEEEecCCCcEEEEeCCccccc-ccCCCCCcCCCCceeeeecCCCcceeeE
Q 021657          171 SNGVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKK-VEQGPRTTNYPAGLFFQHAGHRDKVVDF  249 (309)
Q Consensus       171 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~dg~i~iwd~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~v~~~  249 (309)
                          +....    +...|++++|+|+|  + +.|..||.+++|+....... ....+..    . .+....+|...|.++
T Consensus       156 ----~~~~~----~~~~Vs~v~WSpkG--~-~vg~~dg~i~~~~~~~~~~~~k~~I~~P----p-~~~~~~~~~~~V~sI  219 (388)
T 1xip_A          156 ----KSTKQ----LAQNVTSFDVTNSQ--L-AVLLKDRSFQSFAWRNGEMEKQFEFSLP----S-ELEELPVEEYSPLSV  219 (388)
T ss_dssp             ----CCEEE----EEESEEEEEECSSE--E-EEEETTSCEEEEEEETTEEEEEEEECCC----H-HHHTSCTTTSEEEEE
T ss_pred             ----Ccccc----ccCCceEEEEcCCc--e-EEEEcCCcEEEEcCCCccccccceecCC----c-ccccccCCCeeEEEE
Confidence                44432    34589999999999  3 47888999999987652210 0000000    0 001112477899999


Q ss_pred             EEccCCCeEEEEec
Q 021657          250 HWNASDPWTVVSVS  263 (309)
Q Consensus       250 ~~~~~~~~~~~s~s  263 (309)
                      .|.+++.++++-..
T Consensus       220 ~wl~~~~flv~y~~  233 (388)
T 1xip_A          220 TILSPQDFLAVFGN  233 (388)
T ss_dssp             EESSSSEEEEEEEC
T ss_pred             EEecCCeEEEEEcC
Confidence            99998776665443

>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633}

Probab=99.66  E-value=3.7e-15  Score=121.62  Aligned_cols=230  Identities=10%  Similarity=-0.007  Sum_probs=135.6

Q ss_pred             EEEECCCCCEEEEecCCCcEEEEeCCccccccccCCccccccCC-----------------------CCceeecC---CC
Q 021657           14 ALAMCPTEPYVLSGGKDKSVVLWSIQDHITSSATDPATAKSAGS-----------------------SGSIIKQS---PK   67 (309)
Q Consensus        14 ~~~~~~~~~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~-----------------------~~~~~~~~---~~   67 (309)
                      .+.|+|||++|+.++.++.|++||+.++...............+                       ......+.   ..
T Consensus        85 ~~~~spdg~~l~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~spdg~~~~~~~~~~~  164 (396)
T 3c5m_A           85 GGFISTDERAFFYVKNELNLMKVDLETLEEQVIYTVDEEWKGYGTWVANSDCTKLVGIEILKRDWQPLTSWEKFAEFYHT  164 (396)
T ss_dssp             TCEECTTSSEEEEEETTTEEEEEETTTCCEEEEEECCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHHHT
T ss_pred             cceECCCCCEEEEEEcCCcEEEEECCCCCcEEEEecccccCCCCCEEEeccCCccccccccccccCCCCcceeeeeeccC
Confidence            47899999999999999999999998763222111000000000                       00000000   01


Q ss_pred             CCCCCcccCCCCCcCcccccccccCCeEEEEEec-CCCcEEEEEcCC------CeEEEEEcCCCCcceEEEeecc-CCce
Q 021657           68 PGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCP-SSAQEFCSVGDD------SCLILWDARVGTSPVIKVEKAH-DADL  139 (309)
Q Consensus        68 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~~l~s~~~d------g~i~iwd~~~~~~~~~~~~~~~-~~~v  139 (309)
                      .....+.+++..+.+.... ..+...+..+.|+| ++ ..|+..+.+      ..|.+||+..++  ........ ...+
T Consensus       165 ~~~~~l~~~d~~~g~~~~~-~~~~~~~~~~~~sp~dg-~~l~~~~~~~~~~~~~~l~~~d~~~~~--~~~l~~~~~~~~~  240 (396)
T 3c5m_A          165 NPTCRLIKVDIETGELEVI-HQDTAWLGHPIYRPFDD-STVGFCHEGPHDLVDARMWLVNEDGSN--VRKIKEHAEGESC  240 (396)
T ss_dssp             CCCEEEEEEETTTCCEEEE-EEESSCEEEEEEETTEE-EEEEEEECSCSSSCSCCCEEEETTSCC--CEESSCCCTTEEE
T ss_pred             CCcceEEEEECCCCcEEee-ccCCcccccceECCCCC-CEEEEEecCCCCCCCceEEEEECCCCc--eeEeeccCCCccc
Confidence            2344566777766554433 35677889999999 66 545544433      468888986655  22222211 2357


Q ss_pred             eEEEeccCCCCeEEEEcCC-----CcEEEEecCCCCCCCCCCceeeeccCCCCeeEEEEec-CCCcEEEEec--------
Q 021657          140 HCVDWNPLDDNLILTGSAD-----NSVRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWSP-DKSSVFGSSA--------  205 (309)
Q Consensus       140 ~~~~~~~~~~~~l~~~~~d-----g~i~i~d~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~--------  205 (309)
                      ..++|+| +++.|+.++.+     +.|++||+.+      ++...... .. ... +.|+| +|+.++ .++        
T Consensus       241 ~~~~~sp-dg~~l~~~~~~~~~~~~~l~~~d~~~------g~~~~l~~-~~-~~~-~~~s~~dg~~l~-~~~~~~p~~~~  309 (396)
T 3c5m_A          241 THEFWIP-DGSAMAYVSYFKGQTDRVIYKANPET------LENEEVMV-MP-PCS-HLMSNFDGSLMV-GDGCDAPVDVA  309 (396)
T ss_dssp             EEEEECT-TSSCEEEEEEETTTCCEEEEEECTTT------CCEEEEEE-CC-SEE-EEEECSSSSEEE-EEECCC-----
T ss_pred             cceEECC-CCCEEEEEecCCCCccceEEEEECCC------CCeEEeee-CC-CCC-CCccCCCCceEE-EecCCcceeec
Confidence            8899999 88877766543     4499999987      44332221 12 233 89999 999544 432        


Q ss_pred             --------CCCcEEEEeCCcccccccCCCCCcCCCCceeeeecCCCc-----------ceeeEEEccCCCeEEEEecCCC
Q 021657          206 --------EDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRD-----------KVVDFHWNASDPWTVVSVSDDC  266 (309)
Q Consensus       206 --------~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~v~~~~~~~~~~~~~~s~s~d~  266 (309)
                              .+..|++||+... +.               ..+..+..           .+..+.|+|++..++.+...+ 
T Consensus       310 ~~~~~~~~~~~~i~~~d~~~~-~~---------------~~l~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~s~~~-  372 (396)
T 3c5m_A          310 DADSYNIENDPFLYVLNTKAK-SA---------------QKLCKHSTSWDVLDGDRQITHPHPSFTPNDDGVLFTSDFE-  372 (396)
T ss_dssp             -----CCCCCCEEEEEETTTT-BC---------------CEEEECCCCCCCBTTBSSTTCCCCEECTTSSEEEEEECTT-
T ss_pred             cccccccCCCCcEEEEecccC-ce---------------EEccCCCCccccccccccCCCCCceEccCCCeEEEEecCC-
Confidence                    3478999998762 11               11222222           256788999998877655443 


Q ss_pred             CCCCCCCeEEEEEcc
Q 021657          267 DSTGGGGTLQIWRMS  281 (309)
Q Consensus       267 ~s~~~dg~v~vw~~~  281 (309)
                            +...+|.+.
T Consensus       373 ------~~~~l~~~~  381 (396)
T 3c5m_A          373 ------GVPAIYIAD  381 (396)
T ss_dssp             ------SSCEEEEEE
T ss_pred             ------CCceEEEEE
Confidence                  555566554

>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633}

Probab=99.64  E-value=1.5e-15  Score=123.86  Aligned_cols=201  Identities=10%  Similarity=0.044  Sum_probs=125.0

Q ss_pred             eEEEEECCCCCEEEEecC---CCcEEEEeCCccccccccCCccccccCCCCceeecCCCCCCCCcccCCCCCcCcccccc
Q 021657           12 EFALAMCPTEPYVLSGGK---DKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYN   88 (309)
Q Consensus        12 V~~~~~~~~~~~l~t~~~---dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   88 (309)
                      +..++|+|||++|+....   +..|.+||+.++...                                        ....
T Consensus        38 ~~~~~~SpdG~~l~~~~~~~g~~~l~~~d~~~~~~~----------------------------------------~l~~   77 (396)
T 3c5m_A           38 FYQKCFTQDGKKLLFAGDFDGNRNYYLLNLETQQAV----------------------------------------QLTE   77 (396)
T ss_dssp             TTSCCBCTTSCEEEEEECTTSSCEEEEEETTTTEEE----------------------------------------ECCC
T ss_pred             eecCcCCCCCCEEEEEEecCCCceEEEEECCCCcEE----------------------------------------Eeec
Confidence            567899999999876643   246788887653211                                        1111


Q ss_pred             cccCCeEEEEEecCCCcEEEEEcCCCeEEEEEcCCCCcceEEEeeccCCceeE-------------------EEeccCCC
Q 021657           89 GHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHC-------------------VDWNPLDD  149 (309)
Q Consensus        89 ~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~-------------------~~~~~~~~  149 (309)
                      .+......+.|+|+| +.|+.++.++.|++||+.+++  .......+......                   +.|+| ++
T Consensus        78 ~~~~~~~~~~~spdg-~~l~~~~~~~~l~~~d~~~~~--~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~sp-dg  153 (396)
T 3c5m_A           78 GKGDNTFGGFISTDE-RAFFYVKNELNLMKVDLETLE--EQVIYTVDEEWKGYGTWVANSDCTKLVGIEILKRDWQP-LT  153 (396)
T ss_dssp             SSCBCTTTCEECTTS-SEEEEEETTTEEEEEETTTCC--EEEEEECCTTEEEEEEEEECTTSSEEEEEEEEGGGCCC-CC
T ss_pred             CCCCccccceECCCC-CEEEEEEcCCcEEEEECCCCC--cEEEEecccccCCCCCEEEeccCCccccccccccccCC-CC
Confidence            112222236899999 778888888899999998877  33333333332222                   35677 66


Q ss_pred             CeEEEE-----cCCCcEEEEecCCCCCCCCCCceeeeccCCCCeeEEEEec-CCCcEEEEecC-C----CcEEEEeCCcc
Q 021657          150 NLILTG-----SADNSVRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWSP-DKSSVFGSSAE-D----GLLNIWDYEKV  218 (309)
Q Consensus       150 ~~l~~~-----~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~~-d----g~i~iwd~~~~  218 (309)
                      +.++..     ..+..|++||+.+      ++..... .+...+..+.|+| ++..++.+... .    ..|.+||+...
T Consensus       154 ~~~~~~~~~~~~~~~~l~~~d~~~------g~~~~~~-~~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~  226 (396)
T 3c5m_A          154 SWEKFAEFYHTNPTCRLIKVDIET------GELEVIH-QDTAWLGHPIYRPFDDSTVGFCHEGPHDLVDARMWLVNEDGS  226 (396)
T ss_dssp             SHHHHHHHHHTCCCEEEEEEETTT------CCEEEEE-EESSCEEEEEEETTEEEEEEEEECSCSSSCSCCCEEEETTSC
T ss_pred             cceeeeeeccCCCcceEEEEECCC------CcEEeec-cCCcccccceECCCCCCEEEEEecCCCCCCCceEEEEECCCC
Confidence            666554     3566899999987      5544333 4566789999999 78755433321 1    46888887641


Q ss_pred             cccccCCCCCcCCCCceeeeecCC--CcceeeEEEccCCCeEEEEecCCCCCCCCCCeEEEEEccc
Q 021657          219 GKKVEQGPRTTNYPAGLFFQHAGH--RDKVVDFHWNASDPWTVVSVSDDCDSTGGGGTLQIWRMSD  282 (309)
Q Consensus       219 ~~~~~~~~~~~~~~~~~~~~~~~~--~~~v~~~~~~~~~~~~~~s~s~d~~s~~~dg~v~vw~~~~  282 (309)
                       +.               ..+..+  ...+..++|+|++.+++.....   .+..++.|++||+..
T Consensus       227 -~~---------------~~l~~~~~~~~~~~~~~spdg~~l~~~~~~---~~~~~~~l~~~d~~~  273 (396)
T 3c5m_A          227 -NV---------------RKIKEHAEGESCTHEFWIPDGSAMAYVSYF---KGQTDRVIYKANPET  273 (396)
T ss_dssp             -CC---------------EESSCCCTTEEEEEEEECTTSSCEEEEEEE---TTTCCEEEEEECTTT
T ss_pred             -ce---------------eEeeccCCCccccceEECCCCCEEEEEecC---CCCccceEEEEECCC
Confidence             11               111112  2357889999999876655433   233345699999873

>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A

Probab=99.63  E-value=2.5e-14  Score=114.05  Aligned_cols=194  Identities=8%  Similarity=-0.011  Sum_probs=134.2

Q ss_pred             ceEEEEECCCCCEEEEecCCCcEEEEeCCccccccccCCccccccCCCCceeecCCCCCCCCcccCCCCCcCcccccccc
Q 021657           11 AEFALAMCPTEPYVLSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGH   90 (309)
Q Consensus        11 ~V~~~~~~~~~~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   90 (309)
                      .|.++.|++++..++..+.++.++.|.-.                                           ....+..+
T Consensus         7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------------------------------------~~~~~~~~   43 (333)
T 2dg1_A            7 DLPTLFYSGKSNSAVPIISESELQTITAE-------------------------------------------PWLEISKK   43 (333)
T ss_dssp             CCCBCCSCGGGGCSSCCCCGGGSCEEECE-------------------------------------------EEEEEESS
T ss_pred             ccceeeecCCccceeEEeecccCcccccc-------------------------------------------eeEEEecc
Confidence            46788888888777777778888888321                                           12334445


Q ss_pred             cCCeEEEEEecCCCcEEEEEcCCCeEEEEEcCCCCcceEEEeeccCCceeEEEeccCCCCeEEEEcCC----CcEEEEec
Q 021657           91 EDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSAD----NSVRMFDR  166 (309)
Q Consensus        91 ~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d----g~i~i~d~  166 (309)
                      ...+.+++|++++ .+++++..++.|.+||..+++  .......+...+.+++++| +++++++...+    +.|.+||.
T Consensus        44 ~~~~~~~~~~~~g-~l~~~~~~~~~i~~~d~~~~~--~~~~~~~~~~~~~~i~~~~-dg~l~v~~~~~~~~~~~i~~~d~  119 (333)
T 2dg1_A           44 GLQLEGLNFDRQG-QLFLLDVFEGNIFKINPETKE--IKRPFVSHKANPAAIKIHK-DGRLFVCYLGDFKSTGGIFAATE  119 (333)
T ss_dssp             CCCEEEEEECTTS-CEEEEETTTCEEEEECTTTCC--EEEEEECSSSSEEEEEECT-TSCEEEEECTTSSSCCEEEEECT
T ss_pred             CccccCcEECCCC-CEEEEECCCCEEEEEeCCCCc--EEEEeeCCCCCcceEEECC-CCcEEEEeCCCCCCCceEEEEeC
Confidence            5667899999998 677788889999999998776  3333334567899999999 88888877666    68999998


Q ss_pred             CCCCCCCCCCceeeec--cCCCCeeEEEEecCCCcEEEEecC------CCcEEEEeCCcccccccCCCCCcCCCCceeee
Q 021657          167 RNLTSNGVGSPINKFE--GHSAAVLCVQWSPDKSSVFGSSAE------DGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQ  238 (309)
Q Consensus       167 ~~~~~~~~~~~~~~~~--~~~~~v~~~~~~~~~~~l~~~~~~------dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~  238 (309)
                      .+      ......+.  .....++.++++|+|. ++++...      .+.|..+|... ++               +..
T Consensus       120 ~~------~~~~~~~~~~~~~~~~~~i~~d~~g~-l~v~~~~~~~~~~~~~l~~~~~~~-~~---------------~~~  176 (333)
T 2dg1_A          120 NG------DNLQDIIEDLSTAYCIDDMVFDSKGG-FYFTDFRGYSTNPLGGVYYVSPDF-RT---------------VTP  176 (333)
T ss_dssp             TS------CSCEEEECSSSSCCCEEEEEECTTSC-EEEEECCCBTTBCCEEEEEECTTS-CC---------------EEE
T ss_pred             CC------CEEEEEEccCccCCcccceEECCCCC-EEEEeccccccCCCceEEEEeCCC-CE---------------EEE
Confidence            87      44332222  2345789999999998 4545443      24455555432 11               111


Q ss_pred             ecCCCcceeeEEEccCCCeEEEEecCCCCCCCCCCeEEEEEcc
Q 021657          239 HAGHRDKVVDFHWNASDPWTVVSVSDDCDSTGGGGTLQIWRMS  281 (309)
Q Consensus       239 ~~~~~~~v~~~~~~~~~~~~~~s~s~d~~s~~~dg~v~vw~~~  281 (309)
                      +..+...+..++|+|++..++++.+.+       +.|.+|++.
T Consensus       177 ~~~~~~~~~~i~~~~dg~~l~v~~~~~-------~~i~~~d~~  212 (333)
T 2dg1_A          177 IIQNISVANGIALSTDEKVLWVTETTA-------NRLHRIALE  212 (333)
T ss_dssp             EEEEESSEEEEEECTTSSEEEEEEGGG-------TEEEEEEEC
T ss_pred             eecCCCcccceEECCCCCEEEEEeCCC-------CeEEEEEec
Confidence            112223478899999988777765554       799999986

>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}

Probab=99.62  E-value=3.7e-13  Score=105.46  Aligned_cols=190  Identities=8%  Similarity=0.063  Sum_probs=127.3

Q ss_pred             cCCCCCcceEEEEECCCCCEEEEecCCCcEEEEeCCccccccccCCccccccCCCCceeecCCCCCCCCcccCCCCCcCc
Q 021657            4 LTGHQDNAEFALAMCPTEPYVLSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGP   83 (309)
Q Consensus         4 l~~H~~~~V~~~~~~~~~~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   83 (309)
                      +..+.. .+.+++++|+|+++++...++.|.+||..++......                                    
T Consensus        64 ~~~~~~-~~~~l~~~~dg~l~v~~~~~~~i~~~d~~~g~~~~~~------------------------------------  106 (296)
T 3e5z_A           64 EMHPSH-HQNGHCLNKQGHLIACSHGLRRLERQREPGGEWESIA------------------------------------  106 (296)
T ss_dssp             EESSCS-SEEEEEECTTCCEEEEETTTTEEEEECSTTCCEEEEE------------------------------------
T ss_pred             EECCCC-CcceeeECCCCcEEEEecCCCeEEEEcCCCCcEEEEe------------------------------------
Confidence            344555 6889999999998888888899999998654211000                                    


Q ss_pred             ccccc-cccCCeEEEEEecCCCcEEEE----Ec-------------CCCeEEEEEcCCCCcceEEEeeccCCceeEEEec
Q 021657           84 RGIYN-GHEDTVEDVTFCPSSAQEFCS----VG-------------DDSCLILWDARVGTSPVIKVEKAHDADLHCVDWN  145 (309)
Q Consensus        84 ~~~~~-~~~~~v~~~~~~~~~~~~l~s----~~-------------~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~  145 (309)
                       .... .....+.+++++|+| +++++    |+             ..+.|..++.. ++   ......+......++|+
T Consensus       107 -~~~~~~~~~~~~~i~~d~~G-~l~vtd~~~g~~~~~~~~~~~~~~~~~~l~~~~~~-g~---~~~~~~~~~~~~gi~~s  180 (296)
T 3e5z_A          107 -DSFEGKKLNSPNDVCLAPDG-SLWFSDPTYGIDKPEEGYGGEMELPGRWVFRLAPD-GT---LSAPIRDRVKPNGLAFL  180 (296)
T ss_dssp             -CEETTEECCCCCCEEECTTS-CEEEEECSHHHHCGGGSSCCCCCSSSCEEEEECTT-SC---EEEEECCCSSEEEEEEC
T ss_pred             -eccCCCCCCCCCCEEECCCC-CEEEECCccccccccccccccccCCCcEEEEECCC-CC---EEEeecCCCCCccEEEC
Confidence             0000 112346789999998 77776    32             13456666554 33   33344556677899999


Q ss_pred             cCCCCeEEEEcCCCcEEEEecCCCCCCCCCCc---eeeeccCCCCeeEEEEecCCCcEEEEecCCCcEEEEeCCcccccc
Q 021657          146 PLDDNLILTGSADNSVRMFDRRNLTSNGVGSP---INKFEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKV  222 (309)
Q Consensus       146 ~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~---~~~~~~~~~~v~~~~~~~~~~~l~~~~~~dg~i~iwd~~~~~~~~  222 (309)
                      | +++.+++.+.++.|.+||+...     +..   ...+..+...+..++++++|. ++++.  ++.|.+||...     
T Consensus       181 ~-dg~~lv~~~~~~~i~~~~~~~~-----g~~~~~~~~~~~~~~~p~~i~~d~~G~-l~v~~--~~~v~~~~~~g-----  246 (296)
T 3e5z_A          181 P-SGNLLVSDTGDNATHRYCLNAR-----GETEYQGVHFTVEPGKTDGLRVDAGGL-IWASA--GDGVHVLTPDG-----  246 (296)
T ss_dssp             T-TSCEEEEETTTTEEEEEEECSS-----SCEEEEEEEECCSSSCCCSEEEBTTSC-EEEEE--TTEEEEECTTS-----
T ss_pred             C-CCCEEEEeCCCCeEEEEEECCC-----CcCcCCCeEeeCCCCCCCeEEECCCCC-EEEEc--CCeEEEECCCC-----
Confidence            9 8888888888899999999731     333   223333455677899999998 55444  78899999763     


Q ss_pred             cCCCCCcCCCCceeeeecCCCcceeeEEE-ccCCCeEEEEe
Q 021657          223 EQGPRTTNYPAGLFFQHAGHRDKVVDFHW-NASDPWTVVSV  262 (309)
Q Consensus       223 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~-~~~~~~~~~s~  262 (309)
                                 ..+..+..+.. +.+++| .|++..|+++.
T Consensus       247 -----------~~~~~~~~~~~-~~~~~f~~~d~~~L~v~t  275 (296)
T 3e5z_A          247 -----------DELGRVLTPQT-TSNLCFGGPEGRTLYMTV  275 (296)
T ss_dssp             -----------CEEEEEECSSC-CCEEEEESTTSCEEEEEE
T ss_pred             -----------CEEEEEECCCC-ceeEEEECCCCCEEEEEc
Confidence                       23344555556 899999 58877777654

>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*

Probab=99.59  E-value=3.4e-12  Score=99.87  Aligned_cols=237  Identities=8%  Similarity=0.017  Sum_probs=148.6

Q ss_pred             cCCCCCcceEEEEECCCCCEEEEecCCCcEEEEeCCcccccc-ccC----CccccccCCCCceeecCCCCCCCCcccCCC
Q 021657            4 LTGHQDNAEFALAMCPTEPYVLSGGKDKSVVLWSIQDHITSS-ATD----PATAKSAGSSGSIIKQSPKPGDGNDKAADG   78 (309)
Q Consensus         4 l~~H~~~~V~~~~~~~~~~~l~t~~~dg~i~vwd~~~~~~~~-~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   78 (309)
                      +..+.. .+.+++++++|.++++...++.|.+||.. +.... ...    ............+...  ....+.+..++.
T Consensus        10 ~~~~~~-~~~~i~~d~~g~l~v~~~~~~~v~~~d~~-~~~~~~~~~~~~~~~~~i~~~~~g~l~v~--~~~~~~i~~~~~   85 (299)
T 2z2n_A           10 LTNQDT-GPYGITVSDKGKVWITQHKANMISCINLD-GKITEYPLPTPDAKVMCLTISSDGEVWFT--ENAANKIGRITK   85 (299)
T ss_dssp             CCSSSC-CEEEEEECTTSCEEEEETTTTEEEEECTT-CCEEEEECSSTTCCEEEEEECTTSCEEEE--ETTTTEEEEECT
T ss_pred             CCCcCC-CccceEECCCCCEEEEecCCCcEEEEcCC-CCeEEecCCcccCceeeEEECCCCCEEEe--CCCCCeEEEECC
Confidence            344444 68999999999988877778999999987 42211 111    0011111112221111  122334555554


Q ss_pred             CCcCccccc--ccccCCeEEEEEecCCCcEEEEEcCCCeEEEEEcCCCCcceEEEeeccCCceeEEEeccCCCCeEEEEc
Q 021657           79 PSVGPRGIY--NGHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGS  156 (309)
Q Consensus        79 ~~~~~~~~~--~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~  156 (309)
                      . .+ ...+  ......+.++++.+++ .++++...++.|..||. +++. ...........+..+++++ ++.++++..
T Consensus        86 ~-g~-~~~~~~~~~~~~~~~i~~~~~g-~l~v~~~~~~~i~~~d~-~g~~-~~~~~~~~~~~~~~i~~~~-~g~l~v~~~  159 (299)
T 2z2n_A           86 K-GI-IKEYTLPNPDSAPYGITEGPNG-DIWFTEMNGNRIGRITD-DGKI-REYELPNKGSYPSFITLGS-DNALWFTEN  159 (299)
T ss_dssp             T-SC-EEEEECSSTTCCEEEEEECTTS-CEEEEETTTTEEEEECT-TCCE-EEEECSSTTCCEEEEEECT-TSCEEEEET
T ss_pred             C-Cc-EEEEeCCCcCCCceeeEECCCC-CEEEEecCCceEEEECC-CCCE-EEecCCCCCCCCceEEEcC-CCCEEEEeC
Confidence            3 11 1112  2244578999999988 77777777889999998 5552 1122223445789999999 888888777


Q ss_pred             CCCcEEEEecCCCCCCCCCCceee-eccCCCCeeEEEEecCCCcEEEEecCCCcEEEEeCCcccccccCCCCCcCCCCce
Q 021657          157 ADNSVRMFDRRNLTSNGVGSPINK-FEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGL  235 (309)
Q Consensus       157 ~dg~i~i~d~~~~~~~~~~~~~~~-~~~~~~~v~~~~~~~~~~~l~~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~  235 (309)
                      .++.|..||. +      ++.... .......+..+++++++. ++++...++.|.+||. . +...             
T Consensus       160 ~~~~i~~~~~-~------g~~~~~~~~~~~~~~~~i~~~~~g~-l~v~~~~~~~i~~~~~-~-g~~~-------------  216 (299)
T 2z2n_A          160 QNNAIGRITE-S------GDITEFKIPTPASGPVGITKGNDDA-LWFVEIIGNKIGRITT-S-GEIT-------------  216 (299)
T ss_dssp             TTTEEEEECT-T------CCEEEEECSSTTCCEEEEEECTTSS-EEEEETTTTEEEEECT-T-CCEE-------------
T ss_pred             CCCEEEEEcC-C------CcEEEeeCCCCCCcceeEEECCCCC-EEEEccCCceEEEECC-C-CcEE-------------
Confidence            7889999998 5      444332 333345688999999988 5666666889999998 3 2211             


Q ss_pred             eeeecCCCcceeeEEEccCCCeEEEEecCCCCCCCCCCeEEEEEcc
Q 021657          236 FFQHAGHRDKVVDFHWNASDPWTVVSVSDDCDSTGGGGTLQIWRMS  281 (309)
Q Consensus       236 ~~~~~~~~~~v~~~~~~~~~~~~~~s~s~d~~s~~~dg~v~vw~~~  281 (309)
                      ......+...+.++++++++. ++++...       ++.|..||..
T Consensus       217 ~~~~~~~~~~~~~i~~~~~g~-l~v~~~~-------~~~i~~~d~~  254 (299)
T 2z2n_A          217 EFKIPTPNARPHAITAGAGID-LWFTEWG-------ANKIGRLTSN  254 (299)
T ss_dssp             EEECSSTTCCEEEEEECSTTC-EEEEETT-------TTEEEEEETT
T ss_pred             EEECCCCCCCceeEEECCCCC-EEEeccC-------CceEEEECCC
Confidence            112233456788999999877 4443322       3789999874

>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B

Probab=99.59  E-value=3.9e-13  Score=105.31  Aligned_cols=222  Identities=10%  Similarity=0.082  Sum_probs=142.2

Q ss_pred             eEEEEECCC-CCEEEEecCCCcEEEEeCCccccccccCCccccccCCCCceeecCCCCCCCCcccCCCCCcCcccccccc
Q 021657           12 EFALAMCPT-EPYVLSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGH   90 (309)
Q Consensus        12 V~~~~~~~~-~~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   90 (309)
                      --+..|+|+ +.++++...++.|..||..++..                                         .. ...
T Consensus        15 ~Egp~w~~~~~~l~~~d~~~~~i~~~d~~~~~~-----------------------------------------~~-~~~   52 (297)
T 3g4e_A           15 GESPVWEEVSNSLLFVDIPAKKVCRWDSFTKQV-----------------------------------------QR-VTM   52 (297)
T ss_dssp             EEEEEEETTTTEEEEEETTTTEEEEEETTTCCE-----------------------------------------EE-EEC
T ss_pred             ccCCeEECCCCEEEEEECCCCEEEEEECCCCcE-----------------------------------------EE-EeC
Confidence            457889995 55677778899999999874311                                         11 112


Q ss_pred             cCCeEEEEEecCCCcEEEEEcCCCeEEEEEcCCCCcceEEEeec--cCCceeEEEeccCCCCeEEEEcCC---------C
Q 021657           91 EDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPVIKVEKA--HDADLHCVDWNPLDDNLILTGSAD---------N  159 (309)
Q Consensus        91 ~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~--~~~~v~~~~~~~~~~~~l~~~~~d---------g  159 (309)
                      ...+.++++++++ .++++ . +..|.+||..+++.........  ....+..++++| +++++++....         .
T Consensus        53 ~~~~~~i~~~~dG-~l~v~-~-~~~l~~~d~~~g~~~~~~~~~~~~~~~~~~di~~d~-dG~l~~~~~~~~~~~~~~~~~  128 (297)
T 3g4e_A           53 DAPVSSVALRQSG-GYVAT-I-GTKFCALNWKEQSAVVLATVDNDKKNNRFNDGKVDP-AGRYFAGTMAEETAPAVLERH  128 (297)
T ss_dssp             SSCEEEEEEBTTS-SEEEE-E-TTEEEEEETTTTEEEEEEECCTTCSSEEEEEEEECT-TSCEEEEEEECCSBTTBCCTT
T ss_pred             CCceEEEEECCCC-CEEEE-E-CCeEEEEECCCCcEEEEEecCCCCCCCCCCCEEECC-CCCEEEecCCcccccccccCC
Confidence            4568999999998 55544 3 5679999988766222211111  123478899999 88876654321         2


Q ss_pred             cEEEEecCCCCCCCCCCceeeeccCCCCeeEEEEecCCCcEEEEecCCCcEEEEeCC-cccccccCCCCCcCCCCceeee
Q 021657          160 SVRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYE-KVGKKVEQGPRTTNYPAGLFFQ  238 (309)
Q Consensus       160 ~i~i~d~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~dg~i~iwd~~-~~~~~~~~~~~~~~~~~~~~~~  238 (309)
                      ...+|.+...     ++ +..+.......+.++|+|+++.++++.+.++.|.+|++. ..+....         ...+..
T Consensus       129 ~~~l~~~d~~-----g~-~~~~~~~~~~pngi~~spdg~~lyv~~~~~~~i~~~~~d~~~G~~~~---------~~~~~~  193 (297)
T 3g4e_A          129 QGALYSLFPD-----HH-VKKYFDQVDISNGLDWSLDHKIFYYIDSLSYSVDAFDYDLQTGQISN---------RRSVYK  193 (297)
T ss_dssp             CEEEEEECTT-----SC-EEEEEEEESBEEEEEECTTSCEEEEEEGGGTEEEEEEECTTTCCEEE---------EEEEEE
T ss_pred             CcEEEEEECC-----CC-EEEEeeccccccceEEcCCCCEEEEecCCCCcEEEEeccCCCCcccC---------cEEEEE
Confidence            3455555431     22 222322334568999999999888788888999999985 2222100         122333


Q ss_pred             ecCCCcceeeEEEccCCCeEEEEecCCCCCCCCCCeEEEEEccccccCChhhHhHhhhcccceEEEeeeC
Q 021657          239 HAGHRDKVVDFHWNASDPWTVVSVSDDCDSTGGGGTLQIWRMSDLIYRPQDEVLAELEKFKAHVISCTSK  308 (309)
Q Consensus       239 ~~~~~~~v~~~~~~~~~~~~~~s~s~d~~s~~~dg~v~vw~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~  308 (309)
                      +..+......+++++++. +.++....       +.|..||..      +++.+..+..+...+++++|.
T Consensus       194 ~~~~~~~p~g~~~d~~G~-lwva~~~~-------~~v~~~d~~------tG~~~~~i~~p~~~~t~~~f~  249 (297)
T 3g4e_A          194 LEKEEQIPDGMCIDAEGK-LWVACYNG-------GRVIRLDPV------TGKRLQTVKLPVDKTTSCCFG  249 (297)
T ss_dssp             CCGGGCEEEEEEEBTTSC-EEEEEETT-------TEEEEECTT------TCCEEEEEECSSSBEEEEEEE
T ss_pred             CCCCCCCCCeeEECCCCC-EEEEEcCC-------CEEEEEcCC------CceEEEEEECCCCCceEEEEe
Confidence            333445678999999886 44443333       789999987      567777777666678888885

>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...

Probab=99.59  E-value=5e-13  Score=105.51  Aligned_cols=226  Identities=11%  Similarity=0.077  Sum_probs=141.3

Q ss_pred             ceEEEEECCCCCEEEE-------ecCCCcEEEEeCCccccccccCCccccccCCCCceeecCCCCCCCCcccCCCCCcCc
Q 021657           11 AEFALAMCPTEPYVLS-------GGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGP   83 (309)
Q Consensus        11 ~V~~~~~~~~~~~l~t-------~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   83 (309)
                      ...+++|++++.++++       +..++.|.+||..++.......                                   
T Consensus        19 ~~~~~~~~~~g~l~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~-----------------------------------   63 (314)
T 1pjx_A           19 GAEGPVFDKNGDFYIVAPEVEVNGKPAGEILRIDLKTGKKTVICK-----------------------------------   63 (314)
T ss_dssp             TCEEEEECTTSCEEEEETTCEETTEECCEEEEECTTTCCEEEEEC-----------------------------------
T ss_pred             CccCceECCCCCEEEEEeccccCCCCCCEEEEEeCCCCcEEEEEe-----------------------------------
Confidence            3579999999988888       6788999999976432110000                                   


Q ss_pred             ccccccccCCeEEEEEecC-CCcEEEEEcCCCeEEEEEcCCCCcceEEE-eec----cCCceeEEEeccCCCCeEEEEcC
Q 021657           84 RGIYNGHEDTVEDVTFCPS-SAQEFCSVGDDSCLILWDARVGTSPVIKV-EKA----HDADLHCVDWNPLDDNLILTGSA  157 (309)
Q Consensus        84 ~~~~~~~~~~v~~~~~~~~-~~~~l~s~~~dg~i~iwd~~~~~~~~~~~-~~~----~~~~v~~~~~~~~~~~~l~~~~~  157 (309)
                       ....++...+.+++++++ + .++++.. ...|.+||.. ++  .... ...    ....+.++++++ +++++++...
T Consensus        64 -~~~~~~~~~~~~i~~~~~~g-~l~v~~~-~~~l~~~d~~-g~--~~~~~~~~~~~~~~~~~~~i~~d~-~g~l~v~~~~  136 (314)
T 1pjx_A           64 -PEVNGYGGIPAGCQCDRDAN-QLFVADM-RLGLLVVQTD-GT--FEEIAKKDSEGRRMQGCNDCAFDY-EGNLWITAPA  136 (314)
T ss_dssp             -CEETTEECCEEEEEECSSSS-EEEEEET-TTEEEEEETT-SC--EEECCSBCTTSCBCBCCCEEEECT-TSCEEEEECB
T ss_pred             -cccCCCCCCCceEEEecCCC-cEEEEEC-CCCEEEEeCC-CC--EEEEEeccCCCccccCCcCEEECC-CCCEEEEecC
Confidence             000123456889999998 6 6555554 4479999987 65  2222 111    123578999999 8888777665


Q ss_pred             C---------------CcEEEEecCCCCCCCCCCceeeeccCCCCeeEEEEe----cCCCcEEEEecCCCcEEEEeCCcc
Q 021657          158 D---------------NSVRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWS----PDKSSVFGSSAEDGLLNIWDYEKV  218 (309)
Q Consensus       158 d---------------g~i~i~d~~~~~~~~~~~~~~~~~~~~~~v~~~~~~----~~~~~l~~~~~~dg~i~iwd~~~~  218 (309)
                      +               +.|..||..       ++.. .+.........++++    |+++.++++...++.|.+||+...
T Consensus       137 ~~~~~~~~~~~~~~~~~~l~~~~~~-------g~~~-~~~~~~~~~~~i~~~~~~d~dg~~l~v~~~~~~~i~~~~~~~~  208 (314)
T 1pjx_A          137 GEVAPADYTRSMQEKFGSIYCFTTD-------GQMI-QVDTAFQFPNGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGP  208 (314)
T ss_dssp             CBCTTSCCCBTTSSSCEEEEEECTT-------SCEE-EEEEEESSEEEEEEEECTTSCEEEEEEEETTTTEEEEEEEEET
T ss_pred             cccccccccccccCCCCeEEEECCC-------CCEE-EeccCCCCcceEEEecccCCCCCEEEEEECCCCeEEEEECCCC
Confidence            5               456666643       2222 222233456889999    999777767777899999998631


Q ss_pred             cccccCCCCCcCCCCceeeeecCCC-cceeeEEEccCCCeEEEEecCCCCCCCCCCeEEEEEccccccCChhhHhHhhhc
Q 021657          219 GKKVEQGPRTTNYPAGLFFQHAGHR-DKVVDFHWNASDPWTVVSVSDDCDSTGGGGTLQIWRMSDLIYRPQDEVLAELEK  297 (309)
Q Consensus       219 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~v~~~~~~~~~~~~~~s~s~d~~s~~~dg~v~vw~~~~~~~~~~~~~~~~~~~  297 (309)
                      +....         ...+..+..+. ..+..+++++++..++ +...       ++.|.+||..      +++.+..+..
T Consensus       209 g~~~~---------~~~~~~~~~~~~~~p~~i~~d~~G~l~v-~~~~-------~~~i~~~d~~------~g~~~~~~~~  265 (314)
T 1pjx_A          209 AKIEN---------KKVWGHIPGTHEGGADGMDFDEDNNLLV-ANWG-------SSHIEVFGPD------GGQPKMRIRC  265 (314)
T ss_dssp             TEEEE---------EEEEEECCCCSSCEEEEEEEBTTCCEEE-EEET-------TTEEEEECTT------CBSCSEEEEC
T ss_pred             Ccccc---------ceEEEECCCCCCCCCCceEECCCCCEEE-EEcC-------CCEEEEEcCC------CCcEeEEEeC
Confidence            21100         11222333443 5678899999886544 3322       3789999987      3444444444


Q ss_pred             ccceEEEeeeCC
Q 021657          298 FKAHVISCTSKP  309 (309)
Q Consensus       298 h~~~v~~~~~~P  309 (309)
                      +...+.+++|+|
T Consensus       266 ~~~~~~~i~~~~  277 (314)
T 1pjx_A          266 PFEKPSNLHFKP  277 (314)
T ss_dssp             SSSCEEEEEECT
T ss_pred             CCCCceeEEECC
Confidence            546677777754

>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}

Probab=99.59  E-value=4.7e-13  Score=103.41  Aligned_cols=182  Identities=9%  Similarity=0.024  Sum_probs=128.4

Q ss_pred             CCCEEEEecCCCcEEEEeCCccccccccCCccccccCCCCceeecCCCCCCCCcccCCCCCcCccccccccc-CCeEEEE
Q 021657           20 TEPYVLSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHE-DTVEDVT   98 (309)
Q Consensus        20 ~~~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~v~~~~   98 (309)
                      .+++|++++.|+.|.+||.+++..                                        +..+..+. ..+.++.
T Consensus         4 ~~~~lv~~~~~~~v~~~d~~tG~~----------------------------------------~w~~~~~~~~~~~~~~   43 (276)
T 3no2_A            4 PQHLLVGGSGWNKIAIINKDTKEI----------------------------------------VWEYPLEKGWECNSVA   43 (276)
T ss_dssp             CCEEEEECTTCSEEEEEETTTTEE----------------------------------------EEEEECCTTCCCCEEE
T ss_pred             CCcEEEeeCCCCEEEEEECCCCeE----------------------------------------EEEeCCCccCCCcCeE
Confidence            467899999999999999875432                                        33333333 4678899


Q ss_pred             EecCCCcEEEEEcCCCeEEEEEcCCCCcceEEEeecc-CCceeEEEeccCCCCeEEEEcC-CCcEEEEecCCCCCCCCCC
Q 021657           99 FCPSSAQEFCSVGDDSCLILWDARVGTSPVIKVEKAH-DADLHCVDWNPLDDNLILTGSA-DNSVRMFDRRNLTSNGVGS  176 (309)
Q Consensus        99 ~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~-~~~v~~~~~~~~~~~~l~~~~~-dg~i~i~d~~~~~~~~~~~  176 (309)
                      +.|+| ++++  +.++.|..||. +++  .+..+..+ ...+.++.+.| +++++++.+. ++.|..+|. +      ++
T Consensus        44 ~~pdG-~ilv--s~~~~V~~~d~-~G~--~~W~~~~~~~~~~~~~~~~~-dG~~lv~~~~~~~~v~~vd~-~------Gk  109 (276)
T 3no2_A           44 ATKAG-EILF--SYSKGAKMITR-DGR--ELWNIAAPAGCEMQTARILP-DGNALVAWCGHPSTILEVNM-K------GE  109 (276)
T ss_dssp             ECTTS-CEEE--ECBSEEEEECT-TSC--EEEEEECCTTCEEEEEEECT-TSCEEEEEESTTEEEEEECT-T------SC
T ss_pred             ECCCC-CEEE--eCCCCEEEECC-CCC--EEEEEcCCCCccccccEECC-CCCEEEEecCCCCEEEEEeC-C------CC
Confidence            99998 7777  35778999998 677  55555544 35788999999 9999999877 777777775 3      67


Q ss_pred             ceeeecc------CCCCeeEEEEecCCCcEEEEecCCCcEEEEeCCcccccccCCCCCcCCCCceeeeecCCCcceeeEE
Q 021657          177 PINKFEG------HSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKVVDFH  250 (309)
Q Consensus       177 ~~~~~~~------~~~~v~~~~~~~~~~~l~~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~  250 (309)
                      .+.++..      +......+++.++|.. +++...++.|..||..  ++              .+..+... ....++.
T Consensus       110 ~l~~~~~~~~~~~~~~~~~~v~~~~~G~~-lv~~~~~~~v~~~d~~--G~--------------~~w~~~~~-~~~~~~~  171 (276)
T 3no2_A          110 VLSKTEFETGIERPHAQFRQINKNKKGNY-LVPLFATSEVREIAPN--GQ--------------LLNSVKLS-GTPFSSA  171 (276)
T ss_dssp             EEEEEEECCSCSSGGGSCSCCEECTTSCE-EEEETTTTEEEEECTT--SC--------------EEEEEECS-SCCCEEE
T ss_pred             EEEEEeccCCCCcccccccCceECCCCCE-EEEecCCCEEEEECCC--CC--------------EEEEEECC-CCcccee
Confidence            6666642      1124556788999995 5688889999999976  33              23344332 3456677


Q ss_pred             EccCCCeEEEEecCCCCCCCCCCeEEEEEcc
Q 021657          251 WNASDPWTVVSVSDDCDSTGGGGTLQIWRMS  281 (309)
Q Consensus       251 ~~~~~~~~~~s~s~d~~s~~~dg~v~vw~~~  281 (309)
                      ..+++..++ ++       ..++.|..+|..
T Consensus       172 ~~~~g~~~v-~~-------~~~~~v~~~d~~  194 (276)
T 3no2_A          172 FLDNGDCLV-AC-------GDAHCFVQLNLE  194 (276)
T ss_dssp             ECTTSCEEE-EC-------BTTSEEEEECTT
T ss_pred             EcCCCCEEE-Ee-------CCCCeEEEEeCc
Confidence            888777655 33       333788888877

>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...

Probab=99.55  E-value=6.2e-13  Score=107.03  Aligned_cols=216  Identities=9%  Similarity=0.084  Sum_probs=128.5

Q ss_pred             eEEEEECCCCCEEEEecC--CCcEEEEeCCccccccc-cCCccc----cccCCCCceeecCCCCCCCCcccCCCCC-cCc
Q 021657           12 EFALAMCPTEPYVLSGGK--DKSVVLWSIQDHITSSA-TDPATA----KSAGSSGSIIKQSPKPGDGNDKAADGPS-VGP   83 (309)
Q Consensus        12 V~~~~~~~~~~~l~t~~~--dg~i~vwd~~~~~~~~~-~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~   83 (309)
                      ...++|+|||++|+++..  +++|.+||+++...... ......    ..+.......   ....++.+..++... .+.
T Consensus       110 p~~i~~spdg~~l~v~n~~~~~~v~v~d~~~~~~~~~~i~~~~~~~v~~~p~~~~~~~---~~~~dg~~~~v~~~~~g~~  186 (361)
T 2oiz_A          110 DGLFRQTTDGKFIVLQNASPATSIGIVDVAKGDYVEDVTAAAGCWSVIPQPNRPRSFM---TICGDGGLLTINLGEDGKV  186 (361)
T ss_dssp             GGGEEECTTSSEEEEEEESSSEEEEEEETTTTEEEEEEGGGTTEEEEEECTTSSSEEE---EEETTSSEEEEEECTTSSE
T ss_pred             cceEEECCCCCEEEEECCCCCCeEEEEECCCCcEEEEEecCCCcceeEEcCCCCeeEE---EECCCCcEEEEEECCCCcE
Confidence            357899999999998864  68999999988744322 111000    0111111111   111122222222221 111


Q ss_pred             c------cccccccCCeEEEEEecCCCcEEEEEcCCCeEEEEEcCCCCcceEEEeecc----------CCceeEEEeccC
Q 021657           84 R------GIYNGHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPVIKVEKAH----------DADLHCVDWNPL  147 (309)
Q Consensus        84 ~------~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~----------~~~v~~~~~~~~  147 (309)
                      .      ..+.....++ .+.+.+++ ..++..+.++.|.++|+..........+...          ......++++| 
T Consensus       187 ~~~~~~~~~~~~~~~~~-~~~~~~~g-~~~~~~~~~~~v~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~g~~~~a~~~-  263 (361)
T 2oiz_A          187 ASQSRSKQMFSVKDDPI-FIAPALDK-DKAHFVSYYGNVYSADFSGDEVKVDGPWSLLNDEDKAKNWVPGGYNLVGLHR-  263 (361)
T ss_dssp             EEEEECCCCSCTTTSCB-CSCCEECS-SEEEEEBTTSEEEEEECSSSSCEEEEEEESCCHHHHHTTCEECCSSCEEEET-
T ss_pred             eeeccccceEcCCCCce-EEEecccC-CEEEEEeCCCeEEEEEecCCCceecccccccCccccccccccCCeeEEEEec-
Confidence            1      1122222222 23346666 4455566889999999976553222221110          11122378999 


Q ss_pred             CCCeEEEEcC-----------CCcEEEEecCCCCCCCCCCceeeeccCCCCeeEEEEecCCCcEEEEecCCCcEEEEeCC
Q 021657          148 DDNLILTGSA-----------DNSVRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYE  216 (309)
Q Consensus       148 ~~~~l~~~~~-----------dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~dg~i~iwd~~  216 (309)
                      +++.++++..           .+.|.+||+.+      .+.+.++..+.  +..++|+|+|++|+ +++. +.|.+||..
T Consensus       264 dg~~lyv~~~~~~~~~~~~~~~~~v~viD~~t------~~~v~~i~~~~--p~~ia~spdg~~l~-v~n~-~~v~v~D~~  333 (361)
T 2oiz_A          264 ASGRMYVFMHPDGKEGTHKFPAAEIWVMDTKT------KQRVARIPGRD--ALSMTIDQQRNLML-TLDG-GNVNVYDIS  333 (361)
T ss_dssp             TTTEEEEEEESSCCTTCTTCCCSEEEEEETTT------TEEEEEEECTT--CCEEEEETTTTEEE-EECS-SCEEEEECS
T ss_pred             CCCeEEEEEccCCCcccccCCCceEEEEECCC------CcEEEEEecCC--eeEEEECCCCCEEE-EeCC-CeEEEEECC
Confidence            7676665532           34899999999      88899988766  89999999999765 5555 999999998


Q ss_pred             cccccccCCCCCcCCCCceeeeecCCCcceeeEEEccCCC
Q 021657          217 KVGKKVEQGPRTTNYPAGLFFQHAGHRDKVVDFHWNASDP  256 (309)
Q Consensus       217 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~  256 (309)
                      + ++            .+.+..+..+......++++|+|.
T Consensus       334 t-~~------------l~~~~~i~~~G~~P~~~~~~p~G~  360 (361)
T 2oiz_A          334 Q-PE------------PKLLRTIEGAAEASLQVQFHPVGG  360 (361)
T ss_dssp             S-SS------------CEEEEEETTSCSSEEEEEECCCSC
T ss_pred             C-Cc------------ceeeEEeccCCCCcEEEEecCCCC
Confidence            7 10            034455555667778899999875

>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}

Probab=99.54  E-value=1.7e-12  Score=103.13  Aligned_cols=205  Identities=8%  Similarity=-0.028  Sum_probs=131.4

Q ss_pred             ceEEEEECCCCCEEEEecCCCcEEEEeCCccccccccCCccccccCCCCceeecCCCCCCCCcccCCCCCcCcccccccc
Q 021657           11 AEFALAMCPTEPYVLSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGH   90 (309)
Q Consensus        11 ~V~~~~~~~~~~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   90 (309)
                      ....++++++++++++...++.|.+||..+.........                                   ....+.
T Consensus        85 ~p~~i~~~~~g~lyv~~~~~~~v~~iD~~t~~~~~~i~~-----------------------------------g~~~~~  129 (328)
T 3dsm_A           85 SPRYIHFLSDEKAYVTQIWDYRIFIINPKTYEITGYIEC-----------------------------------PDMDME  129 (328)
T ss_dssp             SEEEEEEEETTEEEEEEBSCSEEEEEETTTTEEEEEEEC-----------------------------------TTCCTT
T ss_pred             CCcEEEEeCCCeEEEEECCCCeEEEEECCCCeEEEEEEc-----------------------------------CCcccc
Confidence            457899988885555555899999999876422211100                                   000011


Q ss_pred             cCCeEEEEEecCCCcEEEEEc-CCCeEEEEEcCCCCcceEEEeeccCCceeEEEeccCCCCeEEEEcCC----------C
Q 021657           91 EDTVEDVTFCPSSAQEFCSVG-DDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSAD----------N  159 (309)
Q Consensus        91 ~~~v~~~~~~~~~~~~l~s~~-~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d----------g  159 (309)
                      ......+++ ..+ .++++.. .++.|.++|+.+++  ....+.. ......++++| ++++++++..+          +
T Consensus       130 ~~~p~~i~~-~~~-~lyv~~~~~~~~v~viD~~t~~--~~~~i~~-g~~p~~i~~~~-dG~l~v~~~~~~~~~~~~~~~~  203 (328)
T 3dsm_A          130 SGSTEQMVQ-YGK-YVYVNCWSYQNRILKIDTETDK--VVDELTI-GIQPTSLVMDK-YNKMWTITDGGYEGSPYGYEAP  203 (328)
T ss_dssp             TCBCCCEEE-ETT-EEEEEECTTCCEEEEEETTTTE--EEEEEEC-SSCBCCCEECT-TSEEEEEBCCBCTTCSSCBCCC
T ss_pred             CCCcceEEE-ECC-EEEEEcCCCCCEEEEEECCCCe--EEEEEEc-CCCccceEEcC-CCCEEEEECCCccCCccccCCc
Confidence            113445666 333 6566654 48899999998877  4444433 33457899999 88877776654          7


Q ss_pred             cEEEEecCCCCCCCCCCceeeeccC-CCCeeEEEEecCCCcEEEEecCCCcEEEEeCCcccccccCCCCCcCCCCceeee
Q 021657          160 SVRMFDRRNLTSNGVGSPINKFEGH-SAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQ  238 (309)
Q Consensus       160 ~i~i~d~~~~~~~~~~~~~~~~~~~-~~~v~~~~~~~~~~~l~~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~  238 (309)
                      .|.++|..+      ++....+... ......++++|+++.++++.+   .|.+||..+. +...          ..+  
T Consensus       204 ~v~~id~~t------~~v~~~~~~~~g~~p~~la~~~d~~~lyv~~~---~v~~~d~~t~-~~~~----------~~~--  261 (328)
T 3dsm_A          204 SLYRIDAET------FTVEKQFKFKLGDWPSEVQLNGTRDTLYWINN---DIWRMPVEAD-RVPV----------RPF--  261 (328)
T ss_dssp             EEEEEETTT------TEEEEEEECCTTCCCEEEEECTTSCEEEEESS---SEEEEETTCS-SCCS----------SCS--
T ss_pred             eEEEEECCC------CeEEEEEecCCCCCceeEEEecCCCEEEEEcc---EEEEEECCCC-ceee----------eee--
Confidence            899999988      6666666432 236789999999998765432   8999998762 2110          000  


Q ss_pred             ecCCCcceeeEEEccCCCeEEEEecCCCCCCCCCCeEEEEEcc
Q 021657          239 HAGHRDKVVDFHWNASDPWTVVSVSDDCDSTGGGGTLQIWRMS  281 (309)
Q Consensus       239 ~~~~~~~v~~~~~~~~~~~~~~s~s~d~~s~~~dg~v~vw~~~  281 (309)
                      ..........++++|++..++++...|   -..++.|.+||..
T Consensus       262 ~~~~~~~p~gi~vdp~~g~lyva~~~~---y~~~~~V~v~d~~  301 (328)
T 3dsm_A          262 LEFRDTKYYGLTVNPNNGEVYVADAID---YQQQGIVYRYSPQ  301 (328)
T ss_dssp             BCCCSSCEEEEEECTTTCCEEEEECTT---SSSEEEEEEECTT
T ss_pred             ecCCCCceEEEEEcCCCCeEEEEcccc---cccCCEEEEECCC
Confidence            111245678999999777788765110   0223899999986

>2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A*

Probab=99.54  E-value=3.4e-12  Score=112.09  Aligned_cols=205  Identities=7%  Similarity=-0.071  Sum_probs=133.3

Q ss_pred             eEEEEECCCCCEEEEecCCCc----------------EEEEeCCccccccccCCccccccCCCCceeecCCCCCCCCccc
Q 021657           12 EFALAMCPTEPYVLSGGKDKS----------------VVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKA   75 (309)
Q Consensus        12 V~~~~~~~~~~~l~t~~~dg~----------------i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   75 (309)
                      +..++|+|||+.|+.++.++.                |++|++.++...                               
T Consensus       173 ~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~~~l~t~~~~-------------------------------  221 (710)
T 2xdw_A          173 FSCMAWTHDGKGMFYNAYPQQDGKSDGTETSTNLHQKLYYHVLGTDQSE-------------------------------  221 (710)
T ss_dssp             SCCEEECTTSSEEEEEECCCCSSCCSSSCCCCCCCCEEEEEETTSCGGG-------------------------------
T ss_pred             cceEEEEeCCCEEEEEEECCccccccccccccCCCCEEEEEECCCCccc-------------------------------
Confidence            457899999999998887765                888887643110                               


Q ss_pred             CCCCCcCcccccccccCCeEEEEEecCCCcEEEEEcC-----CCeEEEEEcCC------CCcceEEEeeccCCceeEEEe
Q 021657           76 ADGPSVGPRGIYNGHEDTVEDVTFCPSSAQEFCSVGD-----DSCLILWDARV------GTSPVIKVEKAHDADLHCVDW  144 (309)
Q Consensus        76 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~-----dg~i~iwd~~~------~~~~~~~~~~~~~~~v~~~~~  144 (309)
                           ...+.....|...+..+.|+|+| ++|+.++.     +..|.+||+.+      +.. ....+..+...+.. .|
T Consensus       222 -----~~~v~~~~~~~~~~~~~~~SpDg-~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~-~~~~l~~~~~~~~~-~~  293 (710)
T 2xdw_A          222 -----DILCAEFPDEPKWMGGAELSDDG-RYVLLSIREGCDPVNRLWYCDLQQESNGITGIL-KWVKLIDNFEGEYD-YV  293 (710)
T ss_dssp             -----CEEEECCTTCTTCEEEEEECTTS-CEEEEEEECSSSSCCEEEEEEGGGSSSSSCSSC-CCEEEECSSSSCEE-EE
T ss_pred             -----ceEEeccCCCCeEEEEEEEcCCC-CEEEEEEEccCCCccEEEEEECcccccccCCcc-ceEEeeCCCCcEEE-EE
Confidence                 00111112245567889999999 55554443     57899999976      421 13334455555544 47


Q ss_pred             ccCCCCeEEEEcCC----CcEEEEecCCCCCCCCCC--ceeeeccCCC--CeeEEEEecCCCcEEEEecCCCcE--EEEe
Q 021657          145 NPLDDNLILTGSAD----NSVRMFDRRNLTSNGVGS--PINKFEGHSA--AVLCVQWSPDKSSVFGSSAEDGLL--NIWD  214 (309)
Q Consensus       145 ~~~~~~~l~~~~~d----g~i~i~d~~~~~~~~~~~--~~~~~~~~~~--~v~~~~~~~~~~~l~~~~~~dg~i--~iwd  214 (309)
                      +| ++..|+..+..    +.|.+||+.+      +.  ....+..+..  .+..++|++++. ++++...|+..  .+|+
T Consensus       294 s~-dg~~l~~~s~~~~~~~~l~~~d~~~------~~~~~~~~l~~~~~~~~~~~~~~~~~~~-lv~~~~~~g~~~l~~~~  365 (710)
T 2xdw_A          294 TN-EGTVFTFKTNRHSPNYRLINIDFTD------PEESKWKVLVPEHEKDVLEWVACVRSNF-LVLCYLHDVKNTLQLHD  365 (710)
T ss_dssp             EE-ETTEEEEEECTTCTTCEEEEEETTS------CCGGGCEEEECCCSSCEEEEEEEETTTE-EEEEEEETTEEEEEEEE
T ss_pred             ec-cCCEEEEEECCCCCCCEEEEEeCCC------CCcccceeccCCCCCCeEEEEEEEcCCE-EEEEEEECCEEEEEEEE
Confidence            88 77766655443    3699999887      33  2344444433  578899986555 67788888854  5556


Q ss_pred             CCcccccccCCCCCcCCCCceeeeecCCCcceeeEEEccCCCeEEEEecCCCCCCCCCCeEEEEEccc
Q 021657          215 YEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKVVDFHWNASDPWTVVSVSDDCDSTGGGGTLQIWRMSD  282 (309)
Q Consensus       215 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~s~d~~s~~~dg~v~vw~~~~  282 (309)
                      +.. +              .....+..+...+..+.++|++..++++.+    +....+.|++||+..
T Consensus       366 ~~~-g--------------~~~~~l~~~~~~v~~~~~s~d~~~l~~~~s----s~~~P~~i~~~d~~t  414 (710)
T 2xdw_A          366 LAT-G--------------ALLKIFPLEVGSVVGYSGQKKDTEIFYQFT----SFLSPGIIYHCDLTK  414 (710)
T ss_dssp             TTT-C--------------CEEEEECCCSSEEEEEECCTTCSEEEEEEE----CSSCCCEEEEEETTS
T ss_pred             CCC-C--------------CEEEecCCCCceEEEEecCCCCCEEEEEEe----CCCCCCEEEEEECCC
Confidence            533 1              123344556678889999998888777665    445678999999874

>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*

Probab=99.53  E-value=7.9e-12  Score=105.87  Aligned_cols=207  Identities=9%  Similarity=0.036  Sum_probs=134.6

Q ss_pred             ceEEEEECCCCCEEEEecCCCcEEEEeCCccccccccCCccccccCCCCceeecCCCCCCCCcccCCCCCcCcccccccc
Q 021657           11 AEFALAMCPTEPYVLSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGH   90 (309)
Q Consensus        11 ~V~~~~~~~~~~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   90 (309)
                      .+..+.|+|||+++++++.|+.|.+||+...                                      +.+.+..+...
T Consensus       198 ~p~~v~~SpDGr~lyv~~~dg~V~viD~~~~--------------------------------------t~~~v~~i~~G  239 (567)
T 1qks_A          198 AVHISRLSASGRYLFVIGRDGKVNMIDLWMK--------------------------------------EPTTVAEIKIG  239 (567)
T ss_dssp             CEEEEEECTTSCEEEEEETTSEEEEEETTSS--------------------------------------SCCEEEEEECC
T ss_pred             CccceEECCCCCEEEEEcCCCeEEEEECCCC--------------------------------------CCcEeEEEecC
Confidence            4578999999999999999999999998410                                      11122223222


Q ss_pred             cCCeEEEEEe----cCCCcEEEEEcCCCeEEEEEcCCCCcceEEEeec----------cCC-ceeEEEeccCCCCeEEEE
Q 021657           91 EDTVEDVTFC----PSSAQEFCSVGDDSCLILWDARVGTSPVIKVEKA----------HDA-DLHCVDWNPLDDNLILTG  155 (309)
Q Consensus        91 ~~~v~~~~~~----~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~----------~~~-~v~~~~~~~~~~~~l~~~  155 (309)
                       .....++|+    |+|+..+++...++.|.++|..+.+  .+..+..          |.. .+..+..++....+++..
T Consensus       240 -~~P~~ia~s~~~~pDGk~l~v~n~~~~~v~ViD~~t~~--~~~~i~~~~~~~~~~~~~p~~rva~i~~s~~~~~~vv~~  316 (567)
T 1qks_A          240 -SEARSIETSKMEGWEDKYAIAGAYWPPQYVIMDGETLE--PKKIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFIVNV  316 (567)
T ss_dssp             -SEEEEEEECCSTTCTTTEEEEEEEETTEEEEEETTTCC--EEEEEECCEECTTTCCEESCCCEEEEEECSSSSEEEEEE
T ss_pred             -CCCceeEEccccCCCCCEEEEEEccCCeEEEEECCCCc--EEEEEeccccccccccccCCCceEEEEEcCCCCEEEEEe
Confidence             235789999    6985556666677999999988877  4444321          112 577888888444566666


Q ss_pred             cCCCcEEEEecCCCCCCCCCCceeeeccCCCCeeEEEEecCCCcEEEEecCCCcEEEEeCCcccccccCCCCCcCCCCce
Q 021657          156 SADNSVRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGL  235 (309)
Q Consensus       156 ~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~  235 (309)
                      ..+|.|.++|.....    ...+..+. .......+.|+|++++++++...++.|.++|+.+. +...           .
T Consensus       317 ~~~g~v~~vd~~~~~----~~~v~~i~-~~~~~~d~~~~pdgr~~~va~~~sn~V~ViD~~t~-kl~~-----------~  379 (567)
T 1qks_A          317 KETGKILLVDYTDLN----NLKTTEIS-AERFLHDGGLDGSHRYFITAANARNKLVVIDTKEG-KLVA-----------I  379 (567)
T ss_dssp             TTTTEEEEEETTCSS----EEEEEEEE-CCSSEEEEEECTTSCEEEEEEGGGTEEEEEETTTT-EEEE-----------E
T ss_pred             cCCCeEEEEecCCCc----cceeeeee-ccccccCceECCCCCEEEEEeCCCCeEEEEECCCC-cEEE-----------E
Confidence            678999999987621    11222332 34457789999999998888878899999999872 2211           1


Q ss_pred             eee--ecCCCcceeeEEEccCCCeEEEEecCCCCCCCCCCeEEEEEccc
Q 021657          236 FFQ--HAGHRDKVVDFHWNASDPWTVVSVSDDCDSTGGGGTLQIWRMSD  282 (309)
Q Consensus       236 ~~~--~~~~~~~v~~~~~~~~~~~~~~s~s~d~~s~~~dg~v~vw~~~~  282 (309)
                      +-.  ...|...-..+ ++|++..++++..      -.++.|.++|...
T Consensus       380 i~vgg~~Phpg~g~~~-~~p~~g~v~~t~~------~g~~~Vsvid~~~  421 (567)
T 1qks_A          380 EDTGGQTPHPGRGANF-VHPTFGPVWATSH------MGDDSVALIGTDP  421 (567)
T ss_dssp             EECSSSSBCCTTCEEE-EETTTEEEEEEEB------SSSSEEEEEECCT
T ss_pred             EeccCcCCCCccceee-ECCCCCcEEEeCC------CCCCeEEEecCCC
Confidence            100  11232211222 5787666665432      1237999999984

>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1

Probab=99.53  E-value=3.8e-12  Score=99.12  Aligned_cols=152  Identities=16%  Similarity=0.241  Sum_probs=113.5

Q ss_pred             ceEEEEECCCCCEEEEecCCCcEEEEeCCccccccccCCccccccCCCCceeecCCCCCCCCcccCCCCCcCccccc--c
Q 021657           11 AEFALAMCPTEPYVLSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIY--N   88 (309)
Q Consensus        11 ~V~~~~~~~~~~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~   88 (309)
                      .+.+++++|+|+++++...++.|.+||.....                                         +..+  .
T Consensus       122 ~~~~i~~~~~g~l~v~~~~~~~i~~~~~~g~~-----------------------------------------~~~~~~~  160 (286)
T 1q7f_A          122 HPRGVTVDNKGRIIVVECKVMRVIIFDQNGNV-----------------------------------------LHKFGCS  160 (286)
T ss_dssp             CEEEEEECTTSCEEEEETTTTEEEEECTTSCE-----------------------------------------EEEEECT
T ss_pred             CceEEEEeCCCCEEEEECCCCEEEEEcCCCCE-----------------------------------------EEEeCCC
Confidence            57899999999988888889999999965311                                         1111  1


Q ss_pred             cccCCeEEEEEecCCCcEEEEEcCCCeEEEEEcCCCCcceEEEeecc--CCceeEEEeccCCCCeEEEEcCCC-cEEEEe
Q 021657           89 GHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPVIKVEKAH--DADLHCVDWNPLDDNLILTGSADN-SVRMFD  165 (309)
Q Consensus        89 ~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~--~~~v~~~~~~~~~~~~l~~~~~dg-~i~i~d  165 (309)
                      .+...+..+++++++ .++++...++.|++||.. ++  ....+..+  ...+..+++++ +++++++...++ .|.+||
T Consensus       161 ~~~~~p~~i~~~~~g-~l~v~~~~~~~i~~~~~~-g~--~~~~~~~~g~~~~p~~i~~d~-~G~l~v~~~~~~~~i~~~~  235 (286)
T 1q7f_A          161 KHLEFPNGVVVNDKQ-EIFISDNRAHCVKVFNYE-GQ--YLRQIGGEGITNYPIGVGINS-NGEILIADNHNNFNLTIFT  235 (286)
T ss_dssp             TTCSSEEEEEECSSS-EEEEEEGGGTEEEEEETT-CC--EEEEESCTTTSCSEEEEEECT-TCCEEEEECSSSCEEEEEC
T ss_pred             CccCCcEEEEECCCC-CEEEEECCCCEEEEEcCC-CC--EEEEEccCCccCCCcEEEECC-CCCEEEEeCCCCEEEEEEC
Confidence            233468899999998 788888889999999974 44  34444332  35788999999 888888887776 999999


Q ss_pred             cCCCCCCCCCCceeeeccCC--CCeeEEEEecCCCcEEEEecCCCcEEEEeCCc
Q 021657          166 RRNLTSNGVGSPINKFEGHS--AAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEK  217 (309)
Q Consensus       166 ~~~~~~~~~~~~~~~~~~~~--~~v~~~~~~~~~~~l~~~~~~dg~i~iwd~~~  217 (309)
                      ..       ++.+..+..+.  ..+..++++|+|+ ++++ +.|+.|++|++..
T Consensus       236 ~~-------g~~~~~~~~~~~~~~~~~i~~~~~g~-l~vs-~~~~~v~v~~~~~  280 (286)
T 1q7f_A          236 QD-------GQLISALESKVKHAQCFDVALMDDGS-VVLA-SKDYRLYIYRYVQ  280 (286)
T ss_dssp             TT-------SCEEEEEEESSCCSCEEEEEEETTTE-EEEE-ETTTEEEEEECSC
T ss_pred             CC-------CCEEEEEcccCCCCcceeEEECCCCc-EEEE-CCCCeEEEEEccc
Confidence            54       56666665443  3477999999997 5656 5689999999865

>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*

Probab=99.53  E-value=5.5e-12  Score=106.80  Aligned_cols=191  Identities=11%  Similarity=0.105  Sum_probs=137.1

Q ss_pred             CCCCEEEEecCCCcEEEEeCCccccccccCCccccccCCCCceeecCCCCCCCCcccCCCCCcCcccccccccCCeEEEE
Q 021657           19 PTEPYVLSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVT   98 (309)
Q Consensus        19 ~~~~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~   98 (309)
                      |.+.++++...+++|.++|..++                                        +.+..+. ....+..+.
T Consensus       165 ~~~~~~V~~~~~~~V~viD~~t~----------------------------------------~v~~~i~-~g~~p~~v~  203 (567)
T 1qks_A          165 LENLFSVTLRDAGQIALIDGSTY----------------------------------------EIKTVLD-TGYAVHISR  203 (567)
T ss_dssp             GGGEEEEEETTTTEEEEEETTTC----------------------------------------CEEEEEE-CSSCEEEEE
T ss_pred             CCceEEEEeCCCCeEEEEECCCC----------------------------------------eEEEEEe-CCCCccceE
Confidence            44556778888999999998753                                        2222332 223466899


Q ss_pred             EecCCCcEEEEEcCCCeEEEEEcC--CCCcceEEEeeccCCceeEEEec----cCCCCeEEEEcC-CCcEEEEecCCCCC
Q 021657           99 FCPSSAQEFCSVGDDSCLILWDAR--VGTSPVIKVEKAHDADLHCVDWN----PLDDNLILTGSA-DNSVRMFDRRNLTS  171 (309)
Q Consensus        99 ~~~~~~~~l~s~~~dg~i~iwd~~--~~~~~~~~~~~~~~~~v~~~~~~----~~~~~~l~~~~~-dg~i~i~d~~~~~~  171 (309)
                      |+|++ +++++++.|+.|.+||+.  +.+  ....+.. ......++|+    | ++++++++.. ++.|.++|..+   
T Consensus       204 ~SpDG-r~lyv~~~dg~V~viD~~~~t~~--~v~~i~~-G~~P~~ia~s~~~~p-DGk~l~v~n~~~~~v~ViD~~t---  275 (567)
T 1qks_A          204 LSASG-RYLFVIGRDGKVNMIDLWMKEPT--TVAEIKI-GSEARSIETSKMEGW-EDKYAIAGAYWPPQYVIMDGET---  275 (567)
T ss_dssp             ECTTS-CEEEEEETTSEEEEEETTSSSCC--EEEEEEC-CSEEEEEEECCSTTC-TTTEEEEEEEETTEEEEEETTT---
T ss_pred             ECCCC-CEEEEEcCCCeEEEEECCCCCCc--EeEEEec-CCCCceeEEccccCC-CCCEEEEEEccCCeEEEEECCC---
Confidence            99999 677788899999999996  555  4555544 3346799999    7 8887776655 69999999988   


Q ss_pred             CCCCCceeeeccC-----------CCCeeEEEEecCCCcEEEEecCCCcEEEEeCCcccccccCCCCCcCCCCceeeeec
Q 021657          172 NGVGSPINKFEGH-----------SAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHA  240 (309)
Q Consensus       172 ~~~~~~~~~~~~~-----------~~~v~~~~~~~~~~~l~~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~  240 (309)
                         .+++..+...           ...+..+..++++..+++....+|.|.++|.......             .+.. .
T Consensus       276 ---~~~~~~i~~~~~~~~~~~~~p~~rva~i~~s~~~~~~vv~~~~~g~v~~vd~~~~~~~-------------~v~~-i  338 (567)
T 1qks_A          276 ---LEPKKIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFIVNVKETGKILLVDYTDLNNL-------------KTTE-I  338 (567)
T ss_dssp             ---CCEEEEEECCEECTTTCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEETTCSSEE-------------EEEE-E
T ss_pred             ---CcEEEEEeccccccccccccCCCceEEEEEcCCCCEEEEEecCCCeEEEEecCCCccc-------------eeee-e
Confidence               7777766421           1257788899988877777788899999998762211             1111 1


Q ss_pred             CCCcceeeEEEccCCCeEEEEecCCCCCCCCCCeEEEEEccc
Q 021657          241 GHRDKVVDFHWNASDPWTVVSVSDDCDSTGGGGTLQIWRMSD  282 (309)
Q Consensus       241 ~~~~~v~~~~~~~~~~~~~~s~s~d~~s~~~dg~v~vw~~~~  282 (309)
                      .......++.|+|++.+++++...+       +.|.++|+..
T Consensus       339 ~~~~~~~d~~~~pdgr~~~va~~~s-------n~V~ViD~~t  373 (567)
T 1qks_A          339 SAERFLHDGGLDGSHRYFITAANAR-------NKLVVIDTKE  373 (567)
T ss_dssp             ECCSSEEEEEECTTSCEEEEEEGGG-------TEEEEEETTT
T ss_pred             eccccccCceECCCCCEEEEEeCCC-------CeEEEEECCC
Confidence            2234567889999999988876555       7999999984

>1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum}

Probab=99.53  E-value=2.6e-12  Score=113.31  Aligned_cols=243  Identities=9%  Similarity=-0.017  Sum_probs=144.4

Q ss_pred             ceEEEEECCCCCEEEEecCC-----CcEEEEeCCccccccccCC-c--cccccCCCCceeecCCCCC-----------CC
Q 021657           11 AEFALAMCPTEPYVLSGGKD-----KSVVLWSIQDHITSSATDP-A--TAKSAGSSGSIIKQSPKPG-----------DG   71 (309)
Q Consensus        11 ~V~~~~~~~~~~~l~t~~~d-----g~i~vwd~~~~~~~~~~~~-~--~~~~~~~~~~~~~~~~~~~-----------~~   71 (309)
                      .+..++|||||++|+.++.+     ..|++||++++........ .  ..........+........           ..
T Consensus       164 ~~~~~~~SPDG~~la~~~~~~G~e~~~i~v~dl~tg~~~~~~~~~~~~~~~~wspD~~l~~~~~~~~~~~~~~~~~~~~~  243 (741)
T 1yr2_A          164 ALDAWAASDDGRLLAYSVQDGGSDWRTVKFVGVADGKPLADELKWVKFSGLAWLGNDALLYSRFAEPKEGQAFQALNYNQ  243 (741)
T ss_dssp             EEEEEEECTTSSEEEEEEEETTCSEEEEEEEETTTCCEEEEEEEEEESCCCEESTTSEEEEEECCCC--------CCCCC
T ss_pred             EEEeEEECCCCCEEEEEEcCCCCceEEEEEEECCCCCCCCccCCCceeccEEEECCCEEEEEEecCcccccccccCCCCC
Confidence            67899999999999876543     4699999998754322111 0  1111122222222221111           23


Q ss_pred             CcccCCCCCcCc--ccccc--cccCCeEEEEEecCCCcEEEEEcCC-----CeEEEEEcCCCCcceEEEeeccCCceeEE
Q 021657           72 NDKAADGPSVGP--RGIYN--GHEDTVEDVTFCPSSAQEFCSVGDD-----SCLILWDARVGTSPVIKVEKAHDADLHCV  142 (309)
Q Consensus        72 ~~~~~~~~~~~~--~~~~~--~~~~~v~~~~~~~~~~~~l~s~~~d-----g~i~iwd~~~~~~~~~~~~~~~~~~v~~~  142 (309)
                      .+++++..+...  ...+.  .+...+..+.|+|+| ++|+..+.+     ..|.+||+.++.......+..+...+...
T Consensus       244 ~v~~~~lgt~~~~~~lv~~~~~~~~~~~~~~~SpDG-~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~~~  322 (741)
T 1yr2_A          244 TVWLHRLGTPQSADQPVFATPELPKRGHGASVSSDG-RWVVITSSEGTDPVNTVHVARVTNGKIGPVTALIPDLKAQWDF  322 (741)
T ss_dssp             EEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTS-CEEEEEEECTTCSCCEEEEEEEETTEECCCEEEECSSSSCEEE
T ss_pred             EEEEEECCCCchhCEEEeccCCCCeEEEEEEECCCC-CEEEEEEEccCCCcceEEEEECCCCCCcccEEecCCCCceEEE
Confidence            466666655432  12222  233458899999999 555555433     48999999876211123333444444444


Q ss_pred             EeccCCCCeEEEEcCC----CcEEEEecCCCCCCCCC-Cceee-eccCCCCeeEEEEecCCCcEEEEecCCCcEEEEeCC
Q 021657          143 DWNPLDDNLILTGSAD----NSVRMFDRRNLTSNGVG-SPINK-FEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYE  216 (309)
Q Consensus       143 ~~~~~~~~~l~~~~~d----g~i~i~d~~~~~~~~~~-~~~~~-~~~~~~~v~~~~~~~~~~~l~~~~~~dg~i~iwd~~  216 (309)
                      . +| +++.|+..+.+    +.|.+||+.+      + ..... +..+...+..+++.  +..++++...|+..+||.+.
T Consensus       323 ~-~~-dg~~l~~~s~~~~~~~~l~~~d~~~------~~~~~~~l~~~~~~~l~~~~~~--~~~lv~~~~~dg~~~l~~~~  392 (741)
T 1yr2_A          323 V-DG-VGDQLWFVSGDGAPLKKIVRVDLSG------STPRFDTVVPESKDNLESVGIA--GNRLFASYIHDAKSQVLAFD  392 (741)
T ss_dssp             E-EE-ETTEEEEEECTTCTTCEEEEEECSS------SSCEEEEEECCCSSEEEEEEEE--BTEEEEEEEETTEEEEEEEE
T ss_pred             E-ec-cCCEEEEEECCCCCCCEEEEEeCCC------CccccEEEecCCCCeEEEEEEE--CCEEEEEEEECCEEEEEEEe
Confidence            3 47 77777766653    4599999876      3 12223 33344456677776  44577888889988888765


Q ss_pred             cccccccCCCCCcCCCCceeeeecC-CCcceeeEEEccCCCeEEEEecCCCCCCCCCCeEEEEEccc
Q 021657          217 KVGKKVEQGPRTTNYPAGLFFQHAG-HRDKVVDFHWNASDPWTVVSVSDDCDSTGGGGTLQIWRMSD  282 (309)
Q Consensus       217 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~~s~s~d~~s~~~dg~v~vw~~~~  282 (309)
                      ..+.              ....+.. +...+..+.++|+++.++++.+    +....++|++||+..
T Consensus       393 ~~g~--------------~~~~l~~~~~~~v~~~~~s~d~~~l~~~~s----s~~~P~~i~~~d~~t  441 (741)
T 1yr2_A          393 LDGK--------------PAGAVSLPGIGSASGLSGRPGDRHAYLSFS----SFTQPATVLALDPAT  441 (741)
T ss_dssp             TTSC--------------EEEECBCSSSCEEEEEECCBTCSCEEEEEE----ETTEEEEEEEEETTT
T ss_pred             CCCC--------------ceeeccCCCCeEEEEeecCCCCCEEEEEEc----CCCCCCEEEEEECCC
Confidence            3222              1222222 3567889999998887776654    445568999999873

>1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C*

Probab=99.52  E-value=1.9e-12  Score=103.64  Aligned_cols=130  Identities=14%  Similarity=0.095  Sum_probs=100.2

Q ss_pred             eEEEEECCCCCEEEEecCCCcEEEEeCCccccccccCCccccccCCCCceeecCCCCCCCCcccCCCCCcCccccccccc
Q 021657           12 EFALAMCPTEPYVLSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHE   91 (309)
Q Consensus        12 V~~~~~~~~~~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   91 (309)
                      |+.|+|  ++.+|+++ .++.|++||+.+..                                        .......|.
T Consensus        90 V~~l~f--d~~~L~v~-~~~~l~v~dv~sl~----------------------------------------~~~~~~~~~  126 (388)
T 1xip_A           90 VIFVCF--HGDQVLVS-TRNALYSLDLEELS----------------------------------------EFRTVTSFE  126 (388)
T ss_dssp             EEEEEE--ETTEEEEE-ESSEEEEEESSSTT----------------------------------------CEEEEEECS
T ss_pred             eeEEEE--CCCEEEEE-cCCcEEEEEchhhh----------------------------------------ccCccceee
Confidence            899999  99999999 88999999997531                                        112234456


Q ss_pred             CCeEEEEEecCCCcEEEEEcCCCeEEEEEcCCCCcceEEEeeccCCceeEEEeccCCCCeEEEEcCCCcEEEEecCCCCC
Q 021657           92 DTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTS  171 (309)
Q Consensus        92 ~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~  171 (309)
                      ..+.++.+.+.  . +++++.||.|.+||+.++.  ...    +...|+|++|+| .|  ++.|..||.+++|+...   
T Consensus       127 ~~v~~i~~~~p--~-~av~~~dG~L~v~dl~~~~--~~~----~~~~Vs~v~WSp-kG--~~vg~~dg~i~~~~~~~---  191 (388)
T 1xip_A          127 KPVFQLKNVNN--T-LVILNSVNDLSALDLRTKS--TKQ----LAQNVTSFDVTN-SQ--LAVLLKDRSFQSFAWRN---  191 (388)
T ss_dssp             SCEEEEEECSS--E-EEEEETTSEEEEEETTTCC--EEE----EEESEEEEEECS-SE--EEEEETTSCEEEEEEET---
T ss_pred             cceeeEEecCC--C-EEEEECCCCEEEEEccCCc--ccc----ccCCceEEEEcC-Cc--eEEEEcCCcEEEEcCCC---
Confidence            67888777654  3 8888999999999998776  222    345899999999 77  78899999999998876   


Q ss_pred             CCCCCc--eeee------c---cCCCCeeEEEEecCCCcEEE
Q 021657          172 NGVGSP--INKF------E---GHSAAVLCVQWSPDKSSVFG  202 (309)
Q Consensus       172 ~~~~~~--~~~~------~---~~~~~v~~~~~~~~~~~l~~  202 (309)
                         ...  ..++      .   +|...|.+|.|.+++.++++
T Consensus       192 ---~~~~~k~~I~~Pp~~~~~~~~~~~V~sI~wl~~~~flv~  230 (388)
T 1xip_A          192 ---GEMEKQFEFSLPSELEELPVEEYSPLSVTILSPQDFLAV  230 (388)
T ss_dssp             ---TEEEEEEEECCCHHHHTSCTTTSEEEEEEESSSSEEEEE
T ss_pred             ---ccccccceecCCcccccccCCCeeEEEEEEecCCeEEEE
Confidence               443  4445      2   36788999999999987553

>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...

Probab=99.51  E-value=1.8e-11  Score=96.57  Aligned_cols=203  Identities=5%  Similarity=0.057  Sum_probs=129.9

Q ss_pred             CCCcceEEEEECCC-CCEEEEecCCCcEEEEeCCccccccc-cCCccccccCCCCceeecCCCCCCCCcccCCCCCcCcc
Q 021657            7 HQDNAEFALAMCPT-EPYVLSGGKDKSVVLWSIQDHITSSA-TDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPR   84 (309)
Q Consensus         7 H~~~~V~~~~~~~~-~~~l~t~~~dg~i~vwd~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   84 (309)
                      +.. .+.+++++++ ++++++.. .+.|.+||.+ +..... ...                                   
T Consensus        69 ~~~-~~~~i~~~~~~g~l~v~~~-~~~l~~~d~~-g~~~~~~~~~-----------------------------------  110 (314)
T 1pjx_A           69 YGG-IPAGCQCDRDANQLFVADM-RLGLLVVQTD-GTFEEIAKKD-----------------------------------  110 (314)
T ss_dssp             EEC-CEEEEEECSSSSEEEEEET-TTEEEEEETT-SCEEECCSBC-----------------------------------
T ss_pred             CCC-CCceEEEecCCCcEEEEEC-CCCEEEEeCC-CCEEEEEecc-----------------------------------
Confidence            444 5789999999 76555544 4478889876 321100 000                                   


Q ss_pred             cccccccCCeEEEEEecCCCcEEEEEcCC---------------CeEEEEEcCCCCcceEEEeeccCCceeEEEec----
Q 021657           85 GIYNGHEDTVEDVTFCPSSAQEFCSVGDD---------------SCLILWDARVGTSPVIKVEKAHDADLHCVDWN----  145 (309)
Q Consensus        85 ~~~~~~~~~v~~~~~~~~~~~~l~s~~~d---------------g~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~----  145 (309)
                       ........+.++++.++| +++++...+               +.|..||.. ++  ... ...+......++|+    
T Consensus       111 -~~~~~~~~~~~i~~d~~g-~l~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-g~--~~~-~~~~~~~~~~i~~~~~~d  184 (314)
T 1pjx_A          111 -SEGRRMQGCNDCAFDYEG-NLWITAPAGEVAPADYTRSMQEKFGSIYCFTTD-GQ--MIQ-VDTAFQFPNGIAVRHMND  184 (314)
T ss_dssp             -TTSCBCBCCCEEEECTTS-CEEEEECBCBCTTSCCCBTTSSSCEEEEEECTT-SC--EEE-EEEEESSEEEEEEEECTT
T ss_pred             -CCCccccCCcCEEECCCC-CEEEEecCcccccccccccccCCCCeEEEECCC-CC--EEE-eccCCCCcceEEEecccC
Confidence             000122457889999998 666666544               567777765 44  222 22333456889999    


Q ss_pred             cCCCCeE-EEEcCCCcEEEEecCCCCCCCCCC-----ceeeeccCC-CCeeEEEEecCCCcEEEEecCCCcEEEEeCCcc
Q 021657          146 PLDDNLI-LTGSADNSVRMFDRRNLTSNGVGS-----PINKFEGHS-AAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKV  218 (309)
Q Consensus       146 ~~~~~~l-~~~~~dg~i~i~d~~~~~~~~~~~-----~~~~~~~~~-~~v~~~~~~~~~~~l~~~~~~dg~i~iwd~~~~  218 (309)
                      | +++.+ ++...++.|.+||+...     ++     ....+..+. ..+..++++++|. ++++...++.|.+||.++ 
T Consensus       185 ~-dg~~l~v~~~~~~~i~~~~~~~~-----g~~~~~~~~~~~~~~~~~~p~~i~~d~~G~-l~v~~~~~~~i~~~d~~~-  256 (314)
T 1pjx_A          185 G-RPYQLIVAETPTKKLWSYDIKGP-----AKIENKKVWGHIPGTHEGGADGMDFDEDNN-LLVANWGSSHIEVFGPDG-  256 (314)
T ss_dssp             S-CEEEEEEEETTTTEEEEEEEEET-----TEEEEEEEEEECCCCSSCEEEEEEEBTTCC-EEEEEETTTEEEEECTTC-
T ss_pred             C-CCCEEEEEECCCCeEEEEECCCC-----CccccceEEEECCCCCCCCCCceEECCCCC-EEEEEcCCCEEEEEcCCC-
Confidence            9 77654 45566889999998621     22     223333333 5678899999997 566666688999999874 


Q ss_pred             cccccCCCCCcCCCCceeeeecCCCcceeeEEEccCCCeEEEEecCCCCCCCCCCeEEEEEccc
Q 021657          219 GKKVEQGPRTTNYPAGLFFQHAGHRDKVVDFHWNASDPWTVVSVSDDCDSTGGGGTLQIWRMSD  282 (309)
Q Consensus       219 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~s~d~~s~~~dg~v~vw~~~~  282 (309)
                      +              ..+..+..+...+.+++++|++..++++...+       +.|..|++..
T Consensus       257 g--------------~~~~~~~~~~~~~~~i~~~~dg~~l~v~~~~~-------~~l~~~~~~~  299 (314)
T 1pjx_A          257 G--------------QPKMRIRCPFEKPSNLHFKPQTKTIFVTEHEN-------NAVWKFEWQR  299 (314)
T ss_dssp             B--------------SCSEEEECSSSCEEEEEECTTSSEEEEEETTT-------TEEEEEECSS
T ss_pred             C--------------cEeEEEeCCCCCceeEEECCCCCEEEEEeCCC-------CeEEEEeCCC
Confidence            1              11223334556789999999988777765544       7999999873

>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}

Probab=99.51  E-value=3.7e-11  Score=98.17  Aligned_cols=248  Identities=10%  Similarity=0.030  Sum_probs=140.8

Q ss_pred             ceEEEEECCCCCEEEEecCCCcEEEEeCCccccccccCC---ccccccCCCCceeecCCCCCCCCcccCCCCCcCccccc
Q 021657           11 AEFALAMCPTEPYVLSGGKDKSVVLWSIQDHITSSATDP---ATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIY   87 (309)
Q Consensus        11 ~V~~~~~~~~~~~l~t~~~dg~i~vwd~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   87 (309)
                      ....|+|+++++++++...++.|++||.+++........   .. ...........+........+..++.........+
T Consensus       132 ~P~~la~d~~g~lyv~d~~~~~I~~id~~~g~~~~~~~~~~~~~-ia~~~~g~~l~~~d~~~~~~I~~~d~~~~~~~~~~  210 (409)
T 3hrp_A          132 YMWGIAAVGNNTVLAYQRDDPRVRLISVDDNKVTTVHPGFKGGK-PAVTKDKQRVYSIGWEGTHTVYVYMKASGWAPTRI  210 (409)
T ss_dssp             CEEEEEECSTTEEEEEETTTTEEEEEETTTTEEEEEEETCCBCB-CEECTTSSEEEEEBSSTTCEEEEEEGGGTTCEEEE
T ss_pred             CceEEEEeCCCCEEEEecCCCcEEEEECCCCEEEEeeccCCCCc-eeEecCCCcEEEEecCCCceEEEEEcCCCceeEEe
Confidence            467999999999888888889999999986532211111   11 11111111122221111113444443332222222


Q ss_pred             ----ccccCCeEEEEEecCCCcEEEEEcCCCeEEEEEcCCCCcceEEE--eeccCCce--eEEEeccCCCCeEEEEcCCC
Q 021657           88 ----NGHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPVIKV--EKAHDADL--HCVDWNPLDDNLILTGSADN  159 (309)
Q Consensus        88 ----~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~--~~~~~~~v--~~~~~~~~~~~~l~~~~~dg  159 (309)
                          ......+.+++++|+++.+++ +..++.|+.||..++.......  ..+....-  ..++|+|.++.++++-..++
T Consensus       211 g~~~~~~~~~p~~iav~p~~g~lyv-~d~~~~I~~~d~~~~~~~~~~~~~~~g~~~~~P~~~ia~~p~~g~lyv~d~~~~  289 (409)
T 3hrp_A          211 GQLGSTFSGKIGAVALDETEEWLYF-VDSNKNFGRFNVKTQEVTLIKQLELSGSLGTNPGPYLIYYFVDSNFYMSDQNLS  289 (409)
T ss_dssp             EECCTTSCSCCCBCEECTTSSEEEE-ECTTCEEEEEETTTCCEEEEEECCCCSCCCCSSCCEEEEETTTTEEEEEETTTT
T ss_pred             eeccchhcCCcEEEEEeCCCCeEEE-EECCCcEEEEECCCCCEEEEecccccCCCCCCccccEEEeCCCCEEEEEeCCCC
Confidence                213456788999995435554 6778999999998766211110  12222222  39999994466677777788


Q ss_pred             cEEEEecCCCCCCCCCCceeeeccC---------------CCCeeEEEEecCCCcEEEEec-CCCcEEEEeCCccccccc
Q 021657          160 SVRMFDRRNLTSNGVGSPINKFEGH---------------SAAVLCVQWSPDKSSVFGSSA-EDGLLNIWDYEKVGKKVE  223 (309)
Q Consensus       160 ~i~i~d~~~~~~~~~~~~~~~~~~~---------------~~~v~~~~~~~~~~~l~~~~~-~dg~i~iwd~~~~~~~~~  223 (309)
                      .|+.||...       . +..+.++               -.....++++++|. ++++-. .++.|+.|++.. +....
T Consensus       290 ~I~~~~~~g-------~-~~~~~g~~~~~g~~dg~~~~~~~~~P~gia~d~dG~-lyvad~~~~~~I~~~~~~~-G~v~~  359 (409)
T 3hrp_A          290 SVYKITPDG-------E-CEWFCGSATQKTVQDGLREEALFAQPNGMTVDEDGN-FYIVDGFKGYCLRKLDILD-GYVST  359 (409)
T ss_dssp             EEEEECTTC-------C-EEEEEECTTCCSCBCEEGGGCBCSSEEEEEECTTCC-EEEEETTTTCEEEEEETTT-TEEEE
T ss_pred             EEEEEecCC-------C-EEEEEeCCCCCCcCCCcccccEeCCCeEEEEeCCCC-EEEEeCCCCCEEEEEECCC-CEEEE
Confidence            999998764       2 2223222               13478999999998 677877 899999999654 22111


Q ss_pred             CCCC--CcCCCCceeeeecCCCcceeeEEEccCCCeEEEEecCCCCCCCCCCeEEEEEc
Q 021657          224 QGPR--TTNYPAGLFFQHAGHRDKVVDFHWNASDPWTVVSVSDDCDSTGGGGTLQIWRM  280 (309)
Q Consensus       224 ~~~~--~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~s~d~~s~~~dg~v~vw~~  280 (309)
                      ....  .......  ......-.....++++|++ .++++-..+       +.|+.+++
T Consensus       360 ~~g~~~~~g~~~g--~~~~~~~~~P~giavd~~g-~lyVad~~n-------~~Ir~i~~  408 (409)
T 3hrp_A          360 VAGQVDVASQIDG--TPLEATFNYPYDICYDGEG-GYWIAEAWG-------KAIRKYAV  408 (409)
T ss_dssp             EEECTTCBSCCCB--STTTCCBSSEEEEEECSSS-EEEEEESTT-------CEEEEEEE
T ss_pred             EeCCCCCCCcCCC--ChhceEeCCceEEEEcCCC-CEEEEECCC-------CeEEEEEe
Confidence            0000  0000000  0001112457899999984 566655444       78887765

>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}

Probab=99.50  E-value=1.3e-11  Score=97.98  Aligned_cols=192  Identities=7%  Similarity=-0.030  Sum_probs=130.9

Q ss_pred             ceEEEEECCCCCEEEEecCCCcEEEEeCCccccccccCCccccccCCCCceeecCCCCCCCCcccCCCCCcCcccccccc
Q 021657           11 AEFALAMCPTEPYVLSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGH   90 (309)
Q Consensus        11 ~V~~~~~~~~~~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   90 (309)
                      ....+.++ +++++++...++.|.+||.++.                                        +.+..+. .
T Consensus        45 ~~~~i~~~-~~~lyv~~~~~~~v~viD~~t~----------------------------------------~~~~~i~-~   82 (328)
T 3dsm_A           45 VAQSMVIR-DGIGWIVVNNSHVIFAIDINTF----------------------------------------KEVGRIT-G   82 (328)
T ss_dssp             CEEEEEEE-TTEEEEEEGGGTEEEEEETTTC----------------------------------------CEEEEEE-C
T ss_pred             cceEEEEE-CCEEEEEEcCCCEEEEEECccc----------------------------------------EEEEEcC-C
Confidence            35677774 3555666677899999998753                                        2223332 2


Q ss_pred             cCCeEEEEEecCCCcEEEEEcCCCeEEEEEcCCCCcceEEEeeccC-----CceeEEEeccCCCCeEEEEc-CCCcEEEE
Q 021657           91 EDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPVIKVEKAHD-----ADLHCVDWNPLDDNLILTGS-ADNSVRMF  164 (309)
Q Consensus        91 ~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~-----~~v~~~~~~~~~~~~l~~~~-~dg~i~i~  164 (309)
                      ......+++++++ .++++...++.|.+||..+++  ....+....     .....+++ . ++..+++.. .++.|.++
T Consensus        83 ~~~p~~i~~~~~g-~lyv~~~~~~~v~~iD~~t~~--~~~~i~~g~~~~~~~~p~~i~~-~-~~~lyv~~~~~~~~v~vi  157 (328)
T 3dsm_A           83 FTSPRYIHFLSDE-KAYVTQIWDYRIFIINPKTYE--ITGYIECPDMDMESGSTEQMVQ-Y-GKYVYVNCWSYQNRILKI  157 (328)
T ss_dssp             CSSEEEEEEEETT-EEEEEEBSCSEEEEEETTTTE--EEEEEECTTCCTTTCBCCCEEE-E-TTEEEEEECTTCCEEEEE
T ss_pred             CCCCcEEEEeCCC-eEEEEECCCCeEEEEECCCCe--EEEEEEcCCccccCCCcceEEE-E-CCEEEEEcCCCCCEEEEE
Confidence            3567889999988 766666588999999998877  444433222     14567777 4 566666654 48899999


Q ss_pred             ecCCCCCCCCCCceeeeccCCCCeeEEEEecCCCcEEEEecCC----------CcEEEEeCCcccccccCCCCCcCCCCc
Q 021657          165 DRRNLTSNGVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAED----------GLLNIWDYEKVGKKVEQGPRTTNYPAG  234 (309)
Q Consensus       165 d~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~d----------g~i~iwd~~~~~~~~~~~~~~~~~~~~  234 (309)
                      |+.+      ++.+.++... .....++++|+|+ +++++..+          +.|.++|..+.               +
T Consensus       158 D~~t------~~~~~~i~~g-~~p~~i~~~~dG~-l~v~~~~~~~~~~~~~~~~~v~~id~~t~---------------~  214 (328)
T 3dsm_A          158 DTET------DKVVDELTIG-IQPTSLVMDKYNK-MWTITDGGYEGSPYGYEAPSLYRIDAETF---------------T  214 (328)
T ss_dssp             ETTT------TEEEEEEECS-SCBCCCEECTTSE-EEEEBCCBCTTCSSCBCCCEEEEEETTTT---------------E
T ss_pred             ECCC------CeEEEEEEcC-CCccceEEcCCCC-EEEEECCCccCCccccCCceEEEEECCCC---------------e
Confidence            9998      7777777643 3457899999998 45565544          78999998761               1


Q ss_pred             eeeeecCC-CcceeeEEEccCCCeEEEEecCCCCCCCCCCeEEEEEccc
Q 021657          235 LFFQHAGH-RDKVVDFHWNASDPWTVVSVSDDCDSTGGGGTLQIWRMSD  282 (309)
Q Consensus       235 ~~~~~~~~-~~~v~~~~~~~~~~~~~~s~s~d~~s~~~dg~v~vw~~~~  282 (309)
                      ....+... ......++++|++..++++.          +.|.+||...
T Consensus       215 v~~~~~~~~g~~p~~la~~~d~~~lyv~~----------~~v~~~d~~t  253 (328)
T 3dsm_A          215 VEKQFKFKLGDWPSEVQLNGTRDTLYWIN----------NDIWRMPVEA  253 (328)
T ss_dssp             EEEEEECCTTCCCEEEEECTTSCEEEEES----------SSEEEEETTC
T ss_pred             EEEEEecCCCCCceeEEEecCCCEEEEEc----------cEEEEEECCC
Confidence            22222211 23678999999998887642          2789999873

>3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A*

Probab=99.49  E-value=3.9e-12  Score=111.23  Aligned_cols=205  Identities=12%  Similarity=0.108  Sum_probs=128.4

Q ss_pred             CCCCcceEEEEECCCCCEEEE-----ecCCCcEEEEeCCccccccccCCccccccCCCCceeecCCCCCCCCcccCCCCC
Q 021657            6 GHQDNAEFALAMCPTEPYVLS-----GGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPS   80 (309)
Q Consensus         6 ~H~~~~V~~~~~~~~~~~l~t-----~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (309)
                      +|.. .+..++|||||++||-     |+.+..|++||++++....                                   
T Consensus       126 ~~~~-~l~~~~~SpDg~~lAy~~~~~G~~~~~i~v~dl~tg~~~~-----------------------------------  169 (693)
T 3iuj_A          126 DGTT-ALDQLSFSRDGRILAYSLSLAGSDWREIHLMDVESKQPLE-----------------------------------  169 (693)
T ss_dssp             TSCC-EEEEEEECTTSSEEEEEEECSSCCEEEEEEEETTTCSEEE-----------------------------------
T ss_pred             CCcE-EEEEEEECCCCCEEEEEEecCCCceEEEEEEECCCCCCCc-----------------------------------
Confidence            4555 7889999999999883     3444679999998642110                                   


Q ss_pred             cCcccccccccCCeEEEEEecCCCcEEEEEcCCC-------------eEEEEEcCCCCcceEEEee--c-cCCceeEEEe
Q 021657           81 VGPRGIYNGHEDTVEDVTFCPSSAQEFCSVGDDS-------------CLILWDARVGTSPVIKVEK--A-HDADLHCVDW  144 (309)
Q Consensus        81 ~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg-------------~i~iwd~~~~~~~~~~~~~--~-~~~~v~~~~~  144 (309)
                          ..+..  .....++|+ |+ +.|+.++.+.             .|++|++.+........+.  . +......+.|
T Consensus       170 ----~~~~~--~k~~~~~Ws-Dg-~~l~y~~~~~~~~~~~~~~~~~~~v~~~~lgt~~~~~~~v~~~~~~~~~~~~~~~~  241 (693)
T 3iuj_A          170 ----TPLKD--VKFSGISWL-GN-EGFFYSSYDKPDGSELSARTDQHKVYFHRLGTAQEDDRLVFGAIPAQHHRYVGATV  241 (693)
T ss_dssp             ----EEEEE--EESCCCEEE-TT-TEEEEEESSCCC-------CCCCEEEEEETTSCGGGCEEEESCSGGGCCSEEEEEE
T ss_pred             ----cccCC--ceeccEEEe-CC-CEEEEEEecCcccccccccCCCcEEEEEECCCCcccceEEEecCCCCCeEEEEEEE
Confidence                01111  112467899 88 4555555553             4999999876532233332  2 3445788999


Q ss_pred             ccCCCCeEEEEcC----CCcEEEEecCCCCCCCCCCceeeeccCCCCeeEEEEecCCCcEEEEecCC---CcEEEEeCCc
Q 021657          145 NPLDDNLILTGSA----DNSVRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAED---GLLNIWDYEK  217 (309)
Q Consensus       145 ~~~~~~~l~~~~~----dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~d---g~i~iwd~~~  217 (309)
                      +| ++++|+....    ++.|+++|+.+.     ......+..+....... ++++|..+++....+   +.|..+|+..
T Consensus       242 Sp-Dg~~l~~~~~~~~~~~~i~~~d~~~~-----~~~~~~l~~~~~~~~~~-~~~~g~~l~~~t~~~~~~~~l~~~d~~~  314 (693)
T 3iuj_A          242 TE-DDRFLLISAANSTSGNRLYVKDLSQE-----NAPLLTVQGDLDADVSL-VDNKGSTLYLLTNRDAPNRRLVTVDAAN  314 (693)
T ss_dssp             CT-TSCEEEEEEESSSSCCEEEEEETTST-----TCCCEEEECSSSSCEEE-EEEETTEEEEEECTTCTTCEEEEEETTS
T ss_pred             cC-CCCEEEEEEccCCCCcEEEEEECCCC-----CCceEEEeCCCCceEEE-EeccCCEEEEEECCCCCCCEEEEEeCCC
Confidence            99 8887755432    358999999873     12344555555555554 777777777666554   6788888876


Q ss_pred             ccccccCCCCCcCCCCceeeeecCCCcceeeEEEccCCCeEEEEecCCCCCCCCCCeEEEEEcc
Q 021657          218 VGKKVEQGPRTTNYPAGLFFQHAGHRDKVVDFHWNASDPWTVVSVSDDCDSTGGGGTLQIWRMS  281 (309)
Q Consensus       218 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~s~d~~s~~~dg~v~vw~~~  281 (309)
                      ....             ....+..|...+.  .|++++.+++++...+     .-..|++|++.
T Consensus       315 ~~~~-------------~~~~l~~~~~~~~--~~s~~g~~lv~~~~~~-----g~~~l~~~d~~  358 (693)
T 3iuj_A          315 PGPA-------------HWRDLIPERQQVL--TVHSGSGYLFAEYMVD-----ATARVEQFDYE  358 (693)
T ss_dssp             CCGG-------------GCEEEECCCSSCE--EEEEETTEEEEEEEET-----TEEEEEEECTT
T ss_pred             CCcc-------------ccEEEecCCCCEE--EEEEECCEEEEEEEEC-----CeeEEEEEECC
Confidence            2210             1123344554454  8899899888766554     11267888876

>2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus}

Probab=99.48  E-value=6.4e-12  Score=100.62  Aligned_cols=142  Identities=14%  Similarity=0.121  Sum_probs=89.9

Q ss_pred             CeEEEEEecCCCcEEEEEcCCC-------eEEEEEcCCCCcceEEEeeccCCceeEEEeccCCCCeEEEEcCC-------
Q 021657           93 TVEDVTFCPSSAQEFCSVGDDS-------CLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSAD-------  158 (309)
Q Consensus        93 ~v~~~~~~~~~~~~l~s~~~dg-------~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d-------  158 (309)
                      .+..+.|+|+|  +++++..++       ...||.+.+++   ...+..+ ..+..+  +| +++.|+.++.+       
T Consensus       172 ~~~~~~~spdg--~~~~~~~~~~~~~~~~~~~l~~~d~~~---~~~l~~~-~~~~~~--sp-dg~~l~~~~~~~~~~~~~  242 (347)
T 2gop_A          172 RFSSGIWHRDK--IVVNVPHREIIPQYFKFWDIYIWEDGK---EEKMFEK-VSFYAV--DS-DGERILLYGKPEKKYMSE  242 (347)
T ss_dssp             TTCEEEEETTE--EEEEEECCCSSCCSSCCEEEEEEETTE---EEEEEEE-ESEEEE--EE-CSSCEEEEECCSSSCCCS
T ss_pred             CcccccCCCCe--EEEEEecccccccccccccEEEeCCCc---eEEeccC-cceeeE--CC-CCCEEEEEEccccCCccc
Confidence            67889999998  666665442       34455444333   2333333 444444  89 88888777644       


Q ss_pred             -CcEEEEecCCCCCCCCCCceeeeccCCCCeeE-EEEecCCCcEEEEecCCCcEEEEeCCcccccccCCCCCcCCCCcee
Q 021657          159 -NSVRMFDRRNLTSNGVGSPINKFEGHSAAVLC-VQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLF  236 (309)
Q Consensus       159 -g~i~i~d~~~~~~~~~~~~~~~~~~~~~~v~~-~~~~~~~~~l~~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~  236 (309)
                       ..|.+||  +      ++.......+...+.. +.|+ ++  ++++++.++.++|| +.. ++.               
T Consensus       243 ~~~l~~~d--~------~~~~~l~~~~~~~~~~~~~~s-dg--~~~~~~~~~~~~l~-~~~-g~~---------------  294 (347)
T 2gop_A          243 HNKLYIYD--G------KEVMGILDEVDRGVGQAKIKD-GK--VYFTLFEEGSVNLY-IWD-GEI---------------  294 (347)
T ss_dssp             SCEEEEEC--S------SCEEESSTTCCSEEEEEEEET-TE--EEEEEEETTEEEEE-EES-SSE---------------
T ss_pred             cceEEEEC--C------CceEeccccCCcccCCccEEc-Cc--EEEEEecCCcEEEE-EcC-Cce---------------
Confidence             3688888  4      5554444555677876 8999 77  57788889999999 873 321               


Q ss_pred             eeecCCCcceeeEEEccCCCeEEEEecCCCCCCCCCCeE-EEEEcc
Q 021657          237 FQHAGHRDKVVDFHWNASDPWTVVSVSDDCDSTGGGGTL-QIWRMS  281 (309)
Q Consensus       237 ~~~~~~~~~v~~~~~~~~~~~~~~s~s~d~~s~~~dg~v-~vw~~~  281 (309)
                      ..+..+...|.+++|+|  . ++++++.+       +.. .+|.+.
T Consensus       295 ~~~~~~~~~v~~~~~s~--~-~~~~~~~~-------~~~~~l~~~~  330 (347)
T 2gop_A          295 KPIAKGRHWIMGFDVDE--I-VVYLKETA-------TRLRELFTWD  330 (347)
T ss_dssp             EEEECSSSEEEEEEESS--S-EEEEEECS-------SSCCEEEEES
T ss_pred             EEEecCCCeEEeeeeeC--c-EEEEEcCC-------CChHHheEeC
Confidence            12233467899999999  4 44444433       343 677664

>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A

Probab=99.47  E-value=1.9e-11  Score=94.24  Aligned_cols=156  Identities=4%  Similarity=-0.076  Sum_probs=107.4

Q ss_pred             CCeEEEEEecCCCcEEEEEcCCCeEEEEEcCCCCcceEEEeeccCCceeEEEeccCCCCeEEEEcCCCcEEEEecCCCCC
Q 021657           92 DTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTS  171 (309)
Q Consensus        92 ~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~  171 (309)
                      ..+.++++.+++ .++++.. ++.|.+||.....  ...........+..++++| +++++++...++.|.+|+..+   
T Consensus        67 ~~p~~i~~~~~g-~l~v~~~-~~~i~~~d~~~~~--~~~~~~~~~~~p~~i~~~~-~g~l~v~~~~~~~i~~~~~~~---  138 (270)
T 1rwi_B           67 YQPQGLAVDGAG-TVYVTDF-NNRVVTLAAGSNN--QTVLPFDGLNYPEGLAVDT-QGAVYVADRGNNRVVKLAAGS---  138 (270)
T ss_dssp             CSCCCEEECTTC-CEEEEET-TTEEEEECTTCSC--CEECCCCSCSSEEEEEECT-TCCEEEEEGGGTEEEEECTTC---
T ss_pred             CCcceeEECCCC-CEEEEcC-CCEEEEEeCCCce--EeeeecCCcCCCcceEECC-CCCEEEEECCCCEEEEEECCC---
Confidence            457889999988 6666665 8899999987654  2222222335689999999 888888877889999997655   


Q ss_pred             CCCCCceeeeccCCCCeeEEEEecCCCcEEEEecCCCcEEEEeCCcccccccCCCCCcCCCCceeeeecCCCcceeeEEE
Q 021657          172 NGVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKVVDFHW  251 (309)
Q Consensus       172 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~  251 (309)
                         .............+..++++++|+ ++++...++.|.+||......               ......+...+.++++
T Consensus       139 ---~~~~~~~~~~~~~p~~i~~~~~g~-l~v~~~~~~~i~~~~~~~~~~---------------~~~~~~~~~~p~~i~~  199 (270)
T 1rwi_B          139 ---KTQTVLPFTGLNDPDGVAVDNSGN-VYVTDTDNNRVVKLEAESNNQ---------------VVLPFTDITAPWGIAV  199 (270)
T ss_dssp             ---CSCEECCCCSCCSCCCEEECTTCC-EEEEEGGGTEEEEECTTTCCE---------------EECCCSSCCSEEEEEE
T ss_pred             ---ceeEeeccccCCCceeEEEeCCCC-EEEEECCCCEEEEEecCCCce---------------EeecccCCCCceEEEE
Confidence               333222222334678899999998 676777788999999875211               1111122356789999


Q ss_pred             ccCCCeEEEEecCCCCCCCCCCeEEEEEccc
Q 021657          252 NASDPWTVVSVSDDCDSTGGGGTLQIWRMSD  282 (309)
Q Consensus       252 ~~~~~~~~~s~s~d~~s~~~dg~v~vw~~~~  282 (309)
                      ++++ .++++...+       +.|.+|+...
T Consensus       200 d~~g-~l~v~~~~~-------~~v~~~~~~~  222 (270)
T 1rwi_B          200 DEAG-TVYVTEHNT-------NQVVKLLAGS  222 (270)
T ss_dssp             CTTC-CEEEEETTT-------SCEEEECTTC
T ss_pred             CCCC-CEEEEECCC-------CcEEEEcCCC
Confidence            9987 455544433       7999999873

>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1

Probab=99.47  E-value=3.5e-11  Score=95.49  Aligned_cols=216  Identities=11%  Similarity=0.059  Sum_probs=134.0

Q ss_pred             eEEEEECCCC-CEEEEecCCCcEEEEeCCccccccccCCccccccCCCCceeecCCCCCCCCcccCCCCCcCcccccccc
Q 021657           12 EFALAMCPTE-PYVLSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGH   90 (309)
Q Consensus        12 V~~~~~~~~~-~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   90 (309)
                      ..+..|+|++ .++++...++.|..||.+++..                                         ..+ ..
T Consensus        51 ~egp~~~~~~~~l~~~d~~~~~i~~~d~~~~~~-----------------------------------------~~~-~~   88 (326)
T 2ghs_A           51 GEGPTFDPASGTAWWFNILERELHELHLASGRK-----------------------------------------TVH-AL   88 (326)
T ss_dssp             EEEEEEETTTTEEEEEEGGGTEEEEEETTTTEE-----------------------------------------EEE-EC
T ss_pred             CcCCeEeCCCCEEEEEECCCCEEEEEECCCCcE-----------------------------------------EEE-EC
Confidence            3578899974 4566777789999999874311                                         111 12


Q ss_pred             cCCeEEEEEecCCCcEEEEEcCCCeEEEEEcCCCCcceEEEeec---c-CCceeEEEeccCCCCeEEEEcC------CCc
Q 021657           91 EDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPVIKVEKA---H-DADLHCVDWNPLDDNLILTGSA------DNS  160 (309)
Q Consensus        91 ~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~---~-~~~v~~~~~~~~~~~~l~~~~~------dg~  160 (309)
                      ...+.++.|.+++ .++++. .+ .|.+||..+++  .......   . ...+..++++| +++++++...      .+.
T Consensus        89 ~~~v~~i~~~~dg-~l~v~~-~~-gl~~~d~~~g~--~~~~~~~~~~~~~~~~~~i~~d~-~G~l~v~~~~~~~~~~~~~  162 (326)
T 2ghs_A           89 PFMGSALAKISDS-KQLIAS-DD-GLFLRDTATGV--LTLHAELESDLPGNRSNDGRMHP-SGALWIGTMGRKAETGAGS  162 (326)
T ss_dssp             SSCEEEEEEEETT-EEEEEE-TT-EEEEEETTTCC--EEEEECSSTTCTTEEEEEEEECT-TSCEEEEEEETTCCTTCEE
T ss_pred             CCcceEEEEeCCC-eEEEEE-CC-CEEEEECCCCc--EEEEeeCCCCCCCCCCCCEEECC-CCCEEEEeCCCcCCCCceE
Confidence            3468999999998 666554 44 49999988777  2222211   1 23588999999 8887665432      244


Q ss_pred             EEEEecCCCCCCCCCCceeeeccCCCCeeEEEEecCCCcEEEEecCCCcEEEEeCC-ccc-ccccCCCCCcCCCCceeee
Q 021657          161 VRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYE-KVG-KKVEQGPRTTNYPAGLFFQ  238 (309)
Q Consensus       161 i~i~d~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~dg~i~iwd~~-~~~-~~~~~~~~~~~~~~~~~~~  238 (309)
                      |..+|  +      ++... +.......+.++|+|+++.++++.+.++.|.+||+. ..+ ....         ...+..
T Consensus       163 l~~~~--~------g~~~~-~~~~~~~~~~i~~s~dg~~lyv~~~~~~~I~~~d~~~~~Gl~~~~---------~~~~~~  224 (326)
T 2ghs_A          163 IYHVA--K------GKVTK-LFADISIPNSICFSPDGTTGYFVDTKVNRLMRVPLDARTGLPTGK---------AEVFID  224 (326)
T ss_dssp             EEEEE--T------TEEEE-EEEEESSEEEEEECTTSCEEEEEETTTCEEEEEEBCTTTCCBSSC---------CEEEEE
T ss_pred             EEEEe--C------CcEEE-eeCCCcccCCeEEcCCCCEEEEEECCCCEEEEEEcccccCCcccC---------ceEEEE
Confidence            55555  3      43322 222234567899999999877777778999999986 212 1100         112222


Q ss_pred             ecCCCcceeeEEEccCCCeEEEEecCCCCCCCCCCeEEEEEccccccCChhhHhHhhhcccceEEEeeeC
Q 021657          239 HAGHRDKVVDFHWNASDPWTVVSVSDDCDSTGGGGTLQIWRMSDLIYRPQDEVLAELEKFKAHVISCTSK  308 (309)
Q Consensus       239 ~~~~~~~v~~~~~~~~~~~~~~s~s~d~~s~~~dg~v~vw~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~  308 (309)
                      +.........+++++++..+++ ...+       +.|.+|+..       ++.+..+..+...+.+++|.
T Consensus       225 ~~~~~~~p~gi~~d~~G~lwva-~~~~-------~~v~~~d~~-------g~~~~~i~~~~~~~~~~af~  279 (326)
T 2ghs_A          225 STGIKGGMDGSVCDAEGHIWNA-RWGE-------GAVDRYDTD-------GNHIARYEVPGKQTTCPAFI  279 (326)
T ss_dssp             CTTSSSEEEEEEECTTSCEEEE-EETT-------TEEEEECTT-------CCEEEEEECSCSBEEEEEEE
T ss_pred             CCCCCCCCCeeEECCCCCEEEE-EeCC-------CEEEEECCC-------CCEEEEEECCCCCcEEEEEe
Confidence            3333455678999998865443 2222       689999874       33344454455567888775

>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}

Probab=99.47  E-value=6.4e-11  Score=92.61  Aligned_cols=232  Identities=8%  Similarity=-0.019  Sum_probs=143.4

Q ss_pred             ceEEEEECCCCCEEEEecCCCcEEEEeCCcccccc-ccC----CccccccCCCCceeecCCCCCCCCcccCCCCCcCcc-
Q 021657           11 AEFALAMCPTEPYVLSGGKDKSVVLWSIQDHITSS-ATD----PATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPR-   84 (309)
Q Consensus        11 ~V~~~~~~~~~~~l~t~~~dg~i~vwd~~~~~~~~-~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-   84 (309)
                      .+.+++++++|.+.++...++.|.+||.. +.... ...    ............+...  ....+.+..++.. .+.. 
T Consensus        21 ~p~~i~~d~~g~l~v~~~~~~~v~~~~~~-~~~~~~~~~~~~~~~~~i~~~~~g~l~v~--~~~~~~v~~~d~~-g~~~~   96 (300)
T 2qc5_A           21 GPYGITSSEDGKVWFTQHKANKISSLDQS-GRIKEFEVPTPDAKVMCLIVSSLGDIWFT--ENGANKIGKLSKK-GGFTE   96 (300)
T ss_dssp             CEEEEEECTTSCEEEEETTTTEEEEECTT-SCEEEEECSSTTCCEEEEEECTTSCEEEE--ETTTTEEEEECTT-SCEEE
T ss_pred             CcceeeECCCCCEEEEcCCCCeEEEECCC-CceEEEECCCCCCcceeEEECCCCCEEEE--ecCCCeEEEECCC-CCeEE
Confidence            57899999999988888888999999987 32211 110    0001111111211111  1223445555544 2221 


Q ss_pred             cccccccCCeEEEEEecCCCcEEEEEcCCCeEEEEEcCCCCcceEEEeeccCCceeEEEeccCCCCeEEEEcCCCcEEEE
Q 021657           85 GIYNGHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMF  164 (309)
Q Consensus        85 ~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~  164 (309)
                      ..+......+.++++.+++ .++++...++.|..+|.. ++. ...........+..+++++ +++++++...++.|..|
T Consensus        97 ~~~~~~~~~~~~i~~~~~g-~l~v~~~~~~~i~~~~~~-g~~-~~~~~~~~~~~~~~i~~d~-~g~l~v~~~~~~~i~~~  172 (300)
T 2qc5_A           97 YPLPQPDSGPYGITEGLNG-DIWFTQLNGDRIGKLTAD-GTI-YEYDLPNKGSYPAFITLGS-DNALWFTENQNNSIGRI  172 (300)
T ss_dssp             EECSSTTCCEEEEEECSTT-CEEEEETTTTEEEEECTT-SCE-EEEECSSTTCCEEEEEECT-TSSEEEEETTTTEEEEE
T ss_pred             ecCCCCCCCCccceECCCC-CEEEEccCCCeEEEECCC-CCE-EEccCCCCCCCceeEEECC-CCCEEEEecCCCeEEEE
Confidence            1122234568999999988 777777778899999986 552 1122223446789999999 88877777768899999


Q ss_pred             ecCCCCCCCCCCcee-eeccCCCCeeEEEEecCCCcEEEEecCCCcEEEEeCCcccccccCCCCCcCCCCceeeeecCCC
Q 021657          165 DRRNLTSNGVGSPIN-KFEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHR  243 (309)
Q Consensus       165 d~~~~~~~~~~~~~~-~~~~~~~~v~~~~~~~~~~~l~~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  243 (309)
                      |. +      ++... ........+..+++.+++. ++++...++.|.+||...  ...             ......+.
T Consensus       173 ~~-~------g~~~~~~~~~~~~~~~~i~~d~~g~-l~v~~~~~~~i~~~~~~g--~~~-------------~~~~~~~~  229 (300)
T 2qc5_A          173 TN-T------GKLEEYPLPTNAAAPVGITSGNDGA-LWFVEIMGNKIGRITTTG--EIS-------------EYDIPTPN  229 (300)
T ss_dssp             CT-T------CCEEEEECSSTTCCEEEEEECTTSS-EEEEETTTTEEEEECTTC--CEE-------------EEECSSTT
T ss_pred             CC-C------CcEEEeeCCCCCCCcceEEECCCCC-EEEEccCCCEEEEEcCCC--cEE-------------EEECCCCC
Confidence            98 4      33332 2223345688999999987 666666677899999732  111             11122344


Q ss_pred             cceeeEEEccCCCeEEEEecCCCCCCCCCCeEEEEEcc
Q 021657          244 DKVVDFHWNASDPWTVVSVSDDCDSTGGGGTLQIWRMS  281 (309)
Q Consensus       244 ~~v~~~~~~~~~~~~~~s~s~d~~s~~~dg~v~vw~~~  281 (309)
                      ..+.++++++++. ++++...       ++.|..|+..
T Consensus       230 ~~~~~i~~d~~g~-l~v~~~~-------~~~i~~~~~~  259 (300)
T 2qc5_A          230 ARPHAITAGKNSE-IWFTEWG-------ANQIGRITND  259 (300)
T ss_dssp             CCEEEEEECSTTC-EEEEETT-------TTEEEEECTT
T ss_pred             CCceEEEECCCCC-EEEeccC-------CCeEEEECCC
Confidence            5678999999877 4443332       3788888864

>2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus}

Probab=99.47  E-value=5.3e-12  Score=110.53  Aligned_cols=202  Identities=8%  Similarity=-0.114  Sum_probs=131.0

Q ss_pred             EEEEECCCCCEEEEecCCCc-------------EEEEeCCccccccccCCccccccCCCCceeecCCCCCCCCcccCCCC
Q 021657           13 FALAMCPTEPYVLSGGKDKS-------------VVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGP   79 (309)
Q Consensus        13 ~~~~~~~~~~~l~t~~~dg~-------------i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   79 (309)
                      ..++|+|||+.|+.++.|..             |++|++.++...                                   
T Consensus       171 ~~~~wspDg~~l~~~~~d~~~~~~~~~~~~~~~v~~~~l~t~~~~-----------------------------------  215 (695)
T 2bkl_A          171 ATPKWTPDSKGFYYEWLPTDPSIKVDERPGYTTIRYHTLGTEPSK-----------------------------------  215 (695)
T ss_dssp             CCCEECTTSSEEEEEECCCCTTSCGGGGGGGCEEEEEETTSCGGG-----------------------------------
T ss_pred             cceEEecCCCEEEEEEecCCCCCccccCCCCCEEEEEECCCCchh-----------------------------------
Confidence            57899999999999988776             999998753210                                   


Q ss_pred             CcCcccccccccCCeEEEEEecCCCcEEEEEcCCC----eEEEEEcCCCCcceEEEeeccCCceeEEEeccCCCCeEEEE
Q 021657           80 SVGPRGIYNGHEDTVEDVTFCPSSAQEFCSVGDDS----CLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTG  155 (309)
Q Consensus        80 ~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg----~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~  155 (309)
                       ...+.....+...+..+.|+|+| ++|+.++.++    .|.+|+..+++   ...+..+...+....+ + ++.+++..
T Consensus       216 -~~lv~~~~~~~~~~~~~~~SpDG-~~l~~~~~~~~~~~~l~~~~~~~~~---~~~l~~~~~~~~~~~~-~-~g~l~~~s  288 (695)
T 2bkl_A          216 -DTVVHERTGDPTTFLQSDLSRDG-KYLFVYILRGWSENDVYWKRPGEKD---FRLLVKGVGAKYEVHA-W-KDRFYVLT  288 (695)
T ss_dssp             -CEEEECCCCCTTCEEEEEECTTS-CCEEEEEEETTTEEEEEEECTTCSS---CEEEEECSSCCEEEEE-E-TTEEEEEE
T ss_pred             -ceEEEecCCCCEEEEEEEECCCC-CEEEEEEeCCCCceEEEEEcCCCCc---eEEeecCCCceEEEEe-c-CCcEEEEE
Confidence             00112223355678899999999 5555555444    67777654444   2333345555666666 4 45555554


Q ss_pred             c---CCCcEEEEecCCCCCCCCCCc--eeeeccC--CCCeeEEEEecCCCcEEEEecCCCcEEEEeCCcccccccCCCCC
Q 021657          156 S---ADNSVRMFDRRNLTSNGVGSP--INKFEGH--SAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRT  228 (309)
Q Consensus       156 ~---~dg~i~i~d~~~~~~~~~~~~--~~~~~~~--~~~v~~~~~~~~~~~l~~~~~~dg~i~iwd~~~~~~~~~~~~~~  228 (309)
                      .   .++.|.+||+.+      +..  ...+..+  ...+..++|+ ++ .++++...|+..+||.+...+.        
T Consensus       289 ~~~~~~~~l~~~d~~~------~~~~~~~~l~~~~~~~~l~~~~~~-~~-~lv~~~~~dg~~~l~~~~~~g~--------  352 (695)
T 2bkl_A          289 DEGAPRQRVFEVDPAK------PARASWKEIVPEDSSASLLSVSIV-GG-HLSLEYLKDATSEVRVATLKGK--------  352 (695)
T ss_dssp             CTTCTTCEEEEEBTTB------CSGGGCEEEECCCSSCEEEEEEEE-TT-EEEEEEEETTEEEEEEEETTCC--------
T ss_pred             CCCCCCCEEEEEeCCC------CCccCCeEEecCCCCCeEEEEEEE-CC-EEEEEEEECCEEEEEEEeCCCC--------
Confidence            4   257899999987      432  2333322  4457888888 44 4778889999988887763222        


Q ss_pred             cCCCCceeeeecCC-CcceeeEEEccCCCeEEEEecCCCCCCCCCCeEEEEEccc
Q 021657          229 TNYPAGLFFQHAGH-RDKVVDFHWNASDPWTVVSVSDDCDSTGGGGTLQIWRMSD  282 (309)
Q Consensus       229 ~~~~~~~~~~~~~~-~~~v~~~~~~~~~~~~~~s~s~d~~s~~~dg~v~vw~~~~  282 (309)
                            ....+..+ ...+..++++|++..++++.+    +....+.|++||+..
T Consensus       353 ------~~~~l~~~~~~~v~~~~~s~d~~~l~~~~s----s~~~P~~v~~~d~~~  397 (695)
T 2bkl_A          353 ------PVRTVQLPGVGAASNLMGLEDLDDAYYVFT----SFTTPRQIYKTSVST  397 (695)
T ss_dssp             ------EEEECCCSSSSEECCCBSCTTCSEEEEEEE----ETTEEEEEEEEETTT
T ss_pred             ------eeEEecCCCCeEEEEeecCCCCCEEEEEEc----CCCCCCEEEEEECCC
Confidence                  12223333 567888899998888777665    445568999999874

>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*

Probab=99.46  E-value=5.2e-10  Score=87.36  Aligned_cols=230  Identities=7%  Similarity=0.003  Sum_probs=143.0

Q ss_pred             ceEEEEECCCCCEEEEecCCCcEEEEeCCccccccccC----CccccccCCCCceeecCCCCCCCCcccCCCCCcCccc-
Q 021657           11 AEFALAMCPTEPYVLSGGKDKSVVLWSIQDHITSSATD----PATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRG-   85 (309)
Q Consensus        11 ~V~~~~~~~~~~~l~t~~~dg~i~vwd~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-   85 (309)
                      .+.+++++++|.++++...++.|..||.+.........    ............+...  ....+.+..++. +.+... 
T Consensus        58 ~~~~i~~~~~g~l~v~~~~~~~i~~~~~~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~--~~~~~~i~~~d~-~g~~~~~  134 (299)
T 2z2n_A           58 KVMCLTISSDGEVWFTENAANKIGRITKKGIIKEYTLPNPDSAPYGITEGPNGDIWFT--EMNGNRIGRITD-DGKIREY  134 (299)
T ss_dssp             CEEEEEECTTSCEEEEETTTTEEEEECTTSCEEEEECSSTTCCEEEEEECTTSCEEEE--ETTTTEEEEECT-TCCEEEE
T ss_pred             ceeeEEECCCCCEEEeCCCCCeEEEECCCCcEEEEeCCCcCCCceeeEECCCCCEEEE--ecCCceEEEECC-CCCEEEe
Confidence            57899999999988888878999999986332111110    0001111111111111  112344555555 322221 


Q ss_pred             ccccccCCeEEEEEecCCCcEEEEEcCCCeEEEEEcCCCCcceEEE-eeccCCceeEEEeccCCCCeEEEEcCCCcEEEE
Q 021657           86 IYNGHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPVIKV-EKAHDADLHCVDWNPLDDNLILTGSADNSVRMF  164 (309)
Q Consensus        86 ~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~-~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~  164 (309)
                      ........+..+++.+++ .++++...++.|..||. +++  .... .......+.++++++ ++.++++...++.|..|
T Consensus       135 ~~~~~~~~~~~i~~~~~g-~l~v~~~~~~~i~~~~~-~g~--~~~~~~~~~~~~~~~i~~~~-~g~l~v~~~~~~~i~~~  209 (299)
T 2z2n_A          135 ELPNKGSYPSFITLGSDN-ALWFTENQNNAIGRITE-SGD--ITEFKIPTPASGPVGITKGN-DDALWFVEIIGNKIGRI  209 (299)
T ss_dssp             ECSSTTCCEEEEEECTTS-CEEEEETTTTEEEEECT-TCC--EEEEECSSTTCCEEEEEECT-TSSEEEEETTTTEEEEE
T ss_pred             cCCCCCCCCceEEEcCCC-CEEEEeCCCCEEEEEcC-CCc--EEEeeCCCCCCcceeEEECC-CCCEEEEccCCceEEEE
Confidence            122344568999999988 77777777889999998 555  2222 233445688999999 88877777778899999


Q ss_pred             ecCCCCCCCCCCcee-eeccCCCCeeEEEEecCCCcEEEEecCCCcEEEEeCCcccccccCCCCCcCCCCceeeeecCCC
Q 021657          165 DRRNLTSNGVGSPIN-KFEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHR  243 (309)
Q Consensus       165 d~~~~~~~~~~~~~~-~~~~~~~~v~~~~~~~~~~~l~~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  243 (309)
                      |. +      ++... ........+..++++++|. ++++...++.|..||...  ..             .......+.
T Consensus       210 ~~-~------g~~~~~~~~~~~~~~~~i~~~~~g~-l~v~~~~~~~i~~~d~~g--~~-------------~~~~~~~~~  266 (299)
T 2z2n_A          210 TT-S------GEITEFKIPTPNARPHAITAGAGID-LWFTEWGANKIGRLTSNN--II-------------EEYPIQIKS  266 (299)
T ss_dssp             CT-T------CCEEEEECSSTTCCEEEEEECSTTC-EEEEETTTTEEEEEETTT--EE-------------EEEECSSSS
T ss_pred             CC-C------CcEEEEECCCCCCCceeEEECCCCC-EEEeccCCceEEEECCCC--ce-------------EEEeCCCCC
Confidence            98 5      44322 1233446788999999998 666666788999999732  11             111123345


Q ss_pred             cceeeEEEccCCCeEEEEecCCCCCCCCCCeEEEEEcc
Q 021657          244 DKVVDFHWNASDPWTVVSVSDDCDSTGGGGTLQIWRMS  281 (309)
Q Consensus       244 ~~v~~~~~~~~~~~~~~s~s~d~~s~~~dg~v~vw~~~  281 (309)
                      ..+.++++ +++..++ +.+.        +.+..++..
T Consensus       267 ~~~~~i~~-~~g~l~v-~~~~--------~~l~~~~~~  294 (299)
T 2z2n_A          267 AEPHGICF-DGETIWF-AMEC--------DKIGKLTLI  294 (299)
T ss_dssp             CCEEEEEE-CSSCEEE-EETT--------TEEEEEEEC
T ss_pred             CccceEEe-cCCCEEE-EecC--------CcEEEEEcC
Confidence            67889999 7666444 3322        577777776

>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}

Probab=99.42  E-value=2e-10  Score=88.63  Aligned_cols=178  Identities=10%  Similarity=0.072  Sum_probs=120.0

Q ss_pred             ceEEEEECCCCCEEEEecCCCcEEEEeCCccccccccCCccccccCCCCceeecCCCCCCCCcccCCCCCcCcccccccc
Q 021657           11 AEFALAMCPTEPYVLSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGH   90 (309)
Q Consensus        11 ~V~~~~~~~~~~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   90 (309)
                      .+.++.++|+|++|++  .++.|+.||. ++                                        +.+..+..+
T Consensus        38 ~~~~~~~~pdG~ilvs--~~~~V~~~d~-~G----------------------------------------~~~W~~~~~   74 (276)
T 3no2_A           38 ECNSVAATKAGEILFS--YSKGAKMITR-DG----------------------------------------RELWNIAAP   74 (276)
T ss_dssp             CCCEEEECTTSCEEEE--CBSEEEEECT-TS----------------------------------------CEEEEEECC
T ss_pred             CCcCeEECCCCCEEEe--CCCCEEEECC-CC----------------------------------------CEEEEEcCC
Confidence            4567778888877773  3566777776 32                                        222333322


Q ss_pred             -cCCeEEEEEecCCCcEEEEEcC-CCeEEEEEcCCCCcceEEEee------ccCCceeEEEeccCCCCeEEEEcCCCcEE
Q 021657           91 -EDTVEDVTFCPSSAQEFCSVGD-DSCLILWDARVGTSPVIKVEK------AHDADLHCVDWNPLDDNLILTGSADNSVR  162 (309)
Q Consensus        91 -~~~v~~~~~~~~~~~~l~s~~~-dg~i~iwd~~~~~~~~~~~~~------~~~~~v~~~~~~~~~~~~l~~~~~dg~i~  162 (309)
                       ...+.++.+.++| +++++.+. ++.|..+|. +++  .+..+.      .+......+++.+ +++++++...++.|.
T Consensus        75 ~~~~~~~~~~~~dG-~~lv~~~~~~~~v~~vd~-~Gk--~l~~~~~~~~~~~~~~~~~~v~~~~-~G~~lv~~~~~~~v~  149 (276)
T 3no2_A           75 AGCEMQTARILPDG-NALVAWCGHPSTILEVNM-KGE--VLSKTEFETGIERPHAQFRQINKNK-KGNYLVPLFATSEVR  149 (276)
T ss_dssp             TTCEEEEEEECTTS-CEEEEEESTTEEEEEECT-TSC--EEEEEEECCSCSSGGGSCSCCEECT-TSCEEEEETTTTEEE
T ss_pred             CCccccccEECCCC-CEEEEecCCCCEEEEEeC-CCC--EEEEEeccCCCCcccccccCceECC-CCCEEEEecCCCEEE
Confidence             2467888999999 77777666 778888875 555  333332      1222455677888 999999999999999


Q ss_pred             EEecCCCCCCCCCCceeeeccCCCCeeEEEEecCCCcEEEEecCCCcEEEEeCCcccccccCCCCCcCCCCceeeeecCC
Q 021657          163 MFDRRNLTSNGVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGH  242 (309)
Q Consensus       163 i~d~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~  242 (309)
                      .||..       ++.+.++... ..+.++...++|.. ++++..++.|..+|..+ ++              .+.++..+
T Consensus       150 ~~d~~-------G~~~w~~~~~-~~~~~~~~~~~g~~-~v~~~~~~~v~~~d~~t-G~--------------~~w~~~~~  205 (276)
T 3no2_A          150 EIAPN-------GQLLNSVKLS-GTPFSSAFLDNGDC-LVACGDAHCFVQLNLES-NR--------------IVRRVNAN  205 (276)
T ss_dssp             EECTT-------SCEEEEEECS-SCCCEEEECTTSCE-EEECBTTSEEEEECTTT-CC--------------EEEEEEGG
T ss_pred             EECCC-------CCEEEEEECC-CCccceeEcCCCCE-EEEeCCCCeEEEEeCcC-Cc--------------EEEEecCC
Confidence            99975       6778888754 45667888899985 55777788899999886 22              33333221


Q ss_pred             ------CcceeeEEEccCCCeEEE
Q 021657          243 ------RDKVVDFHWNASDPWTVV  260 (309)
Q Consensus       243 ------~~~v~~~~~~~~~~~~~~  260 (309)
                            ...+..+...+++..+++
T Consensus       206 ~~~~~~l~~~~~~~~~~~G~i~v~  229 (276)
T 3no2_A          206 DIEGVQLFFVAQLFPLQNGGLYIC  229 (276)
T ss_dssp             GSBSCCCSEEEEEEECTTSCEEEE
T ss_pred             CCCCccccccccceEcCCCCEEEE
Confidence                  234778888887775554

>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}

Probab=99.41  E-value=8.1e-11  Score=92.48  Aligned_cols=194  Identities=11%  Similarity=0.025  Sum_probs=123.6

Q ss_pred             ceEEEEECCCCC-EEEEecCCCcEEEEeCCccccccccCCccccccCCCCceeecCCCCCCCCcccCCCCCcCccccccc
Q 021657           11 AEFALAMCPTEP-YVLSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNG   89 (309)
Q Consensus        11 ~V~~~~~~~~~~-~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   89 (309)
                      ......|+|+++ +++++..++.|..|+....                                          ...+..
T Consensus        46 ~~egp~~~~~g~~l~~~d~~~~~i~~~~~~g~------------------------------------------~~~~~~   83 (305)
T 3dr2_A           46 WSEGPAWWEAQRTLVWSDLVGRRVLGWREDGT------------------------------------------VDVLLD   83 (305)
T ss_dssp             SEEEEEEEGGGTEEEEEETTTTEEEEEETTSC------------------------------------------EEEEEE
T ss_pred             CccCCeEeCCCCEEEEEECCCCEEEEEeCCCC------------------------------------------EEEEeC
Confidence            457889999998 6778888999999987421                                          122233


Q ss_pred             ccCCeEEEEEecCCCcEEEEEcCCCeEEEEEcCCCCcceEEEeec----cCCceeEEEeccCCCCeEEE----EcC----
Q 021657           90 HEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPVIKVEKA----HDADLHCVDWNPLDDNLILT----GSA----  157 (309)
Q Consensus        90 ~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~----~~~~v~~~~~~~~~~~~l~~----~~~----  157 (309)
                      +...+..++++++| +++++...++.|.+|+.. ++  .......    ....+..++++| +++++++    |..    
T Consensus        84 ~~~~~~gl~~d~dG-~l~v~~~~~~~v~~~~~~-g~--~~~~~~~~~~~~~~~~~~i~~d~-dG~l~~td~~~g~~~~~~  158 (305)
T 3dr2_A           84 ATAFTNGNAVDAQQ-RLVHCEHGRRAITRSDAD-GQ--AHLLVGRYAGKRLNSPNDLIVAR-DGAIWFTDPPFGLRKPSQ  158 (305)
T ss_dssp             SCSCEEEEEECTTS-CEEEEETTTTEEEEECTT-SC--EEEEECEETTEECSCCCCEEECT-TSCEEEECCSGGGSCGGG
T ss_pred             CCCccceeeECCCC-CEEEEECCCCEEEEECCC-CC--EEEEEeccCCCccCCCCCEEECC-CCCEEEeCcCCCcccccc
Confidence            45568899999998 666666666889999975 54  2222111    113467899999 8988886    432    


Q ss_pred             ---------CCcEEEEecCCCCCCCCCCceeeeccCCCCeeEEEEecCCCcEEEEecC-----CCcEEEEeCCccccccc
Q 021657          158 ---------DNSVRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAE-----DGLLNIWDYEKVGKKVE  223 (309)
Q Consensus       158 ---------dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~-----dg~i~iwd~~~~~~~~~  223 (309)
                               .+.|..||..+      ++.....  .....+.++|+|+++.|+++.+.     ++.|.+|++...+ ...
T Consensus       159 ~~~~~~~~~~~~v~~~d~~~------g~~~~~~--~~~~p~gl~~spdg~~lyv~~~~~~~~~~~~i~~~~~~~~~-l~~  229 (305)
T 3dr2_A          159 GCPADPELAHHSVYRLPPDG------SPLQRMA--DLDHPNGLAFSPDEQTLYVSQTPEQGHGSVEITAFAWRDGA-LHD  229 (305)
T ss_dssp             SCCCCCSSSCEEEEEECSSS------CCCEEEE--EESSEEEEEECTTSSEEEEEECCC---CCCEEEEEEEETTE-EEE
T ss_pred             ccccccccCCCeEEEEcCCC------CcEEEEe--cCCCCcceEEcCCCCEEEEEecCCcCCCCCEEEEEEecCCC-ccC
Confidence                     25677777765      4433222  33456889999999977655444     2789999987522 100


Q ss_pred             CCCCCcCCCCceeeeecCCCcceeeEEEccCCCeEEEEecCCCCCCCCCCeEEEEEcc
Q 021657          224 QGPRTTNYPAGLFFQHAGHRDKVVDFHWNASDPWTVVSVSDDCDSTGGGGTLQIWRMS  281 (309)
Q Consensus       224 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~s~d~~s~~~dg~v~vw~~~  281 (309)
                               ...+..  ........+++++++..++ +       . . +.|.+|+..
T Consensus       230 ---------~~~~~~--~~~~~pdgi~~d~~G~lwv-~-------~-~-~gv~~~~~~  266 (305)
T 3dr2_A          230 ---------RRHFAS--VPDGLPDGFCVDRGGWLWS-S-------S-G-TGVCVFDSD  266 (305)
T ss_dssp             ---------EEEEEC--CSSSCCCSEEECTTSCEEE-C-------C-S-SEEEEECTT
T ss_pred             ---------CeEEEE--CCCCCCCeEEECCCCCEEE-e-------c-C-CcEEEECCC
Confidence                     011111  1233456789999887433 2       1 2 348888875

>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*

Probab=99.39  E-value=5.4e-10  Score=90.06  Aligned_cols=240  Identities=7%  Similarity=-0.035  Sum_probs=141.7

Q ss_pred             EEEECCCCCEEEEec----------CCCcEEEEeCCccccccccCC-----------ccccccCCCCceeecCCCCCCCC
Q 021657           14 ALAMCPTEPYVLSGG----------KDKSVVLWSIQDHITSSATDP-----------ATAKSAGSSGSIIKQSPKPGDGN   72 (309)
Q Consensus        14 ~~~~~~~~~~l~t~~----------~dg~i~vwd~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~   72 (309)
                      .++++|||++|+.+.          .++.|.+||..+.........           .......................
T Consensus        70 ~i~~spDg~~lyv~n~~~~~~~rg~~~~~v~viD~~t~~~~~~i~~~~~~~~~~g~~p~~~~~spDG~~l~v~n~~~~~~  149 (373)
T 2mad_H           70 NPVAAHSGSEFALASTSFSRIAKGKRTDYVEVFDPVTFLPIADIELPDAPRFDVGPYSWMNANTPNNADLLFFQFAAGPA  149 (373)
T ss_pred             CeEECCCCCEEEEEeccccccccCCCCCeEEEEECCCCcEEEEEECCCccccccCCCccceEECCCCCEEEEEecCCCCe
Confidence            889999999988875          367899999987533221111           00111222222222222222456


Q ss_pred             cccCCCCCcCcccc-cccccCCeEEEEEecCCCcEEEEEcCCCeEEEEEcCCCCcceEEEee-----ccCCc-eeEEEec
Q 021657           73 DKAADGPSVGPRGI-YNGHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPVIKVEK-----AHDAD-LHCVDWN  145 (309)
Q Consensus        73 ~~~~~~~~~~~~~~-~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~-----~~~~~-v~~~~~~  145 (309)
                      +.+++ .+.+.+.. +... .   ++.+.|++...+++.+.||.+.++|. +++  ......     ....+ .....+.
T Consensus       150 v~viD-~t~~~~~~~i~~~-~---~~~~~~~~~~~~~~~~~dg~~~~vd~-~g~--~~~~~~~~~~~~~~~p~~~~~~~~  221 (373)
T 2mad_H          150 VGLVV-QGGSSDDQLLSSP-T---CYHIHPGAPSTFYLLCAQGGLAKTDH-AGG--AAGAGLVGAMLTAAQNLLTQPAQA  221 (373)
T ss_pred             EEEEE-CCCCEEeEEcCCC-c---eEEEEeCCCceEEEEcCCCCEEEEEC-CCc--EEEEEeccccccCCcceeecceeE
Confidence            77777 77766655 4321 1   24566777677888889999999999 766  221111     11122 1234566


Q ss_pred             cCCCCeEEEEcCCCcEEEEecCCCCCCCCCCceeeecc----------CCCCeeEEEEecCCCcEEEEec---------C
Q 021657          146 PLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEG----------HSAAVLCVQWSPDKSSVFGSSA---------E  206 (309)
Q Consensus       146 ~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~----------~~~~v~~~~~~~~~~~l~~~~~---------~  206 (309)
                      + ++..++..+..+.+.+.|+....    ...+..+..          .......++++|+++.++++..         .
T Consensus       222 ~-~~~~~~~~~~~~~v~vid~~~~~----~~v~~~~~~~~~~~~~~~~~p~g~~~~~~s~d~~~lyV~~~~~~~~~~~~~  296 (373)
T 2mad_H          222 N-KSGRIVWPVYSGKILQADISAAG----ATNKAPIDALSGGRKADTWRPGGWQQVAYLKSSDGIYLLTSEQSAWKLHAA  296 (373)
T ss_pred             e-cCCEEEEEcCCceEEEEeccCCc----ceEeeeeeecCCcccccceecCceEeEEECCCCCEEEEEeccCCcccccCC
Confidence            6 44444444467899999987521    122222211          1223445789999998776543         2


Q ss_pred             CCcEEEEeCCcccccccCCCCCcCCCCceeeeecCCCcceeeEEEccCCCeEEEEecCCCCCCCCCCeEEEEEccccccC
Q 021657          207 DGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKVVDFHWNASDPWTVVSVSDDCDSTGGGGTLQIWRMSDLIYR  286 (309)
Q Consensus       207 dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~s~d~~s~~~dg~v~vw~~~~~~~~  286 (309)
                      ++.|.++|+.+               .+.+..+. -......++|+|++.++++++..      .++.|.++|+.     
T Consensus       297 ~~~V~VID~~t---------------~~vv~~i~-~g~~p~~i~~s~Dg~~~l~v~~~------~~~~V~ViD~~-----  349 (373)
T 2mad_H          297 AKEVTSVTGLV---------------GQTSSQIS-LGHDVDAISVAQDGGPDLYALSA------GTEVLHIYDAG-----  349 (373)
T ss_pred             CCeEEEEECCC---------------CEEEEEEE-CCCCcCeEEECCCCCeEEEEEcC------CCCeEEEEECC-----
Confidence            35799999987               22333332 22357899999999844444331      23899999999     


Q ss_pred             ChhhHhHh
Q 021657          287 PQDEVLAE  294 (309)
Q Consensus       287 ~~~~~~~~  294 (309)
                       +.+.+.+
T Consensus       350 -t~~vv~~  356 (373)
T 2mad_H          350 -AGDQDQS  356 (373)
T ss_pred             -CCCEEee
Confidence             5665555

>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B

Probab=99.38  E-value=3.3e-10  Score=88.64  Aligned_cols=192  Identities=14%  Similarity=0.081  Sum_probs=120.9

Q ss_pred             ceEEEEECCCCCEEEEecCCCcEEEEeCCccccccccCCccccccCCCCceeecCCCCCCCCcccCCCCCcCcccccccc
Q 021657           11 AEFALAMCPTEPYVLSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGH   90 (309)
Q Consensus        11 ~V~~~~~~~~~~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   90 (309)
                      .+.+++++|+|+++++.  ++.|.+||.+++........                             .       ....
T Consensus        55 ~~~~i~~~~dG~l~v~~--~~~l~~~d~~~g~~~~~~~~-----------------------------~-------~~~~   96 (297)
T 3g4e_A           55 PVSSVALRQSGGYVATI--GTKFCALNWKEQSAVVLATV-----------------------------D-------NDKK   96 (297)
T ss_dssp             CEEEEEEBTTSSEEEEE--TTEEEEEETTTTEEEEEEEC-----------------------------C-------TTCS
T ss_pred             ceEEEEECCCCCEEEEE--CCeEEEEECCCCcEEEEEec-----------------------------C-------CCCC
Confidence            67899999999965543  56888999875321100000                             0       0001


Q ss_pred             cCCeEEEEEecCCCcEEEEEcC---------CCeEEEEEcCCCCcceEEEeeccCCceeEEEeccCCCCeE-EEEcCCCc
Q 021657           91 EDTVEDVTFCPSSAQEFCSVGD---------DSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLI-LTGSADNS  160 (309)
Q Consensus        91 ~~~v~~~~~~~~~~~~l~s~~~---------dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l-~~~~~dg~  160 (309)
                      ...+++++++|+| +++++...         ...-.||.+..... . ............++|+| +++.| ++.+.++.
T Consensus        97 ~~~~~di~~d~dG-~l~~~~~~~~~~~~~~~~~~~~l~~~d~~g~-~-~~~~~~~~~pngi~~sp-dg~~lyv~~~~~~~  172 (297)
T 3g4e_A           97 NNRFNDGKVDPAG-RYFAGTMAEETAPAVLERHQGALYSLFPDHH-V-KKYFDQVDISNGLDWSL-DHKIFYYIDSLSYS  172 (297)
T ss_dssp             SEEEEEEEECTTS-CEEEEEEECCSBTTBCCTTCEEEEEECTTSC-E-EEEEEEESBEEEEEECT-TSCEEEEEEGGGTE
T ss_pred             CCCCCCEEECCCC-CEEEecCCcccccccccCCCcEEEEEECCCC-E-EEEeeccccccceEEcC-CCCEEEEecCCCCc
Confidence            2357889999998 55554422         12334555543321 2 22233345568999999 78755 55666889


Q ss_pred             EEEEecCCCCCCCCCCc-----eeeeccCCCCeeEEEEecCCCcEEEEecCCCcEEEEeCCcccccccCCCCCcCCCCce
Q 021657          161 VRMFDRRNLTSNGVGSP-----INKFEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGL  235 (309)
Q Consensus       161 i~i~d~~~~~~~~~~~~-----~~~~~~~~~~v~~~~~~~~~~~l~~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~  235 (309)
                      |..||+....    +..     ...+......+..++++++|. ++++...++.|..||..+               .+.
T Consensus       173 i~~~~~d~~~----G~~~~~~~~~~~~~~~~~p~g~~~d~~G~-lwva~~~~~~v~~~d~~t---------------G~~  232 (297)
T 3g4e_A          173 VDAFDYDLQT----GQISNRRSVYKLEKEEQIPDGMCIDAEGK-LWVACYNGGRVIRLDPVT---------------GKR  232 (297)
T ss_dssp             EEEEEECTTT----CCEEEEEEEEECCGGGCEEEEEEEBTTSC-EEEEEETTTEEEEECTTT---------------CCE
T ss_pred             EEEEeccCCC----CcccCcEEEEECCCCCCCCCeeEECCCCC-EEEEEcCCCEEEEEcCCC---------------ceE
Confidence            9999974211    322     222333345678999999997 666766678899999875               234


Q ss_pred             eeeecCCCcceeeEEEc-cCCCeEEEEecC
Q 021657          236 FFQHAGHRDKVVDFHWN-ASDPWTVVSVSD  264 (309)
Q Consensus       236 ~~~~~~~~~~v~~~~~~-~~~~~~~~s~s~  264 (309)
                      +..+..+...+++++|. |++..|+++...
T Consensus       233 ~~~i~~p~~~~t~~~f~g~d~~~L~vt~~~  262 (297)
T 3g4e_A          233 LQTVKLPVDKTTSCCFGGKNYSEMYVTCAR  262 (297)
T ss_dssp             EEEEECSSSBEEEEEEESGGGCEEEEEEBC
T ss_pred             EEEEECCCCCceEEEEeCCCCCEEEEEcCC
Confidence            44555566679999998 888888887654

>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}

Probab=99.35  E-value=2.2e-09  Score=83.79  Aligned_cols=219  Identities=7%  Similarity=-0.031  Sum_probs=134.6

Q ss_pred             ceEEEEECCCCCEEEEecCCCcEEEEeCCccccccccC----CccccccCCCCceeecCCCCCCCCcccCCCCCcCccc-
Q 021657           11 AEFALAMCPTEPYVLSGGKDKSVVLWSIQDHITSSATD----PATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRG-   85 (309)
Q Consensus        11 ~V~~~~~~~~~~~l~t~~~dg~i~vwd~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-   85 (309)
                      .+.++++++++.++++...++.|..||...........    ............+...  ....+.+..++.. .+... 
T Consensus        63 ~~~~i~~~~~g~l~v~~~~~~~v~~~d~~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~--~~~~~~i~~~~~~-g~~~~~  139 (300)
T 2qc5_A           63 KVMCLIVSSLGDIWFTENGANKIGKLSKKGGFTEYPLPQPDSGPYGITEGLNGDIWFT--QLNGDRIGKLTAD-GTIYEY  139 (300)
T ss_dssp             CEEEEEECTTSCEEEEETTTTEEEEECTTSCEEEEECSSTTCCEEEEEECSTTCEEEE--ETTTTEEEEECTT-SCEEEE
T ss_pred             cceeEEECCCCCEEEEecCCCeEEEECCCCCeEEecCCCCCCCCccceECCCCCEEEE--ccCCCeEEEECCC-CCEEEc
Confidence            57899999999988887778999999987332111110    0001111111111111  1123344455544 22221 


Q ss_pred             ccccccCCeEEEEEecCCCcEEEEEcCCCeEEEEEcCCCCcceEEEeeccCCceeEEEeccCCCCeEEEEcCCCcEEEEe
Q 021657           86 IYNGHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFD  165 (309)
Q Consensus        86 ~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d  165 (309)
                      .+......+..+++.+++ +++++...++.|..+|. +++. ...........+..+++++ +++++++....+.|..||
T Consensus       140 ~~~~~~~~~~~i~~d~~g-~l~v~~~~~~~i~~~~~-~g~~-~~~~~~~~~~~~~~i~~d~-~g~l~v~~~~~~~i~~~~  215 (300)
T 2qc5_A          140 DLPNKGSYPAFITLGSDN-ALWFTENQNNSIGRITN-TGKL-EEYPLPTNAAAPVGITSGN-DGALWFVEIMGNKIGRIT  215 (300)
T ss_dssp             ECSSTTCCEEEEEECTTS-SEEEEETTTTEEEEECT-TCCE-EEEECSSTTCCEEEEEECT-TSSEEEEETTTTEEEEEC
T ss_pred             cCCCCCCCceeEEECCCC-CEEEEecCCCeEEEECC-CCcE-EEeeCCCCCCCcceEEECC-CCCEEEEccCCCEEEEEc
Confidence            122234578899999988 67777767889999998 5552 1112223445688999999 888777777778899999


Q ss_pred             cCCCCCCCCCCceee-eccCCCCeeEEEEecCCCcEEEEecCCCcEEEEeCCcccccccCCCCCcCCCCceeeeecCCCc
Q 021657          166 RRNLTSNGVGSPINK-FEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRD  244 (309)
Q Consensus       166 ~~~~~~~~~~~~~~~-~~~~~~~v~~~~~~~~~~~l~~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  244 (309)
                      . +      ++.... +......+.+++++++|. ++++...++.|..||...  ..             ..........
T Consensus       216 ~-~------g~~~~~~~~~~~~~~~~i~~d~~g~-l~v~~~~~~~i~~~~~~g--~~-------------~~~~~~~~~~  272 (300)
T 2qc5_A          216 T-T------GEISEYDIPTPNARPHAITAGKNSE-IWFTEWGANQIGRITNDN--TI-------------QEYQLQTENA  272 (300)
T ss_dssp             T-T------CCEEEEECSSTTCCEEEEEECSTTC-EEEEETTTTEEEEECTTS--CE-------------EEEECCSTTC
T ss_pred             C-C------CcEEEEECCCCCCCceEEEECCCCC-EEEeccCCCeEEEECCCC--cE-------------EEEECCccCC
Confidence            8 3      333322 233445688999999988 666666678999999732  11             1111222345


Q ss_pred             ceeeEEEccCCCeEE
Q 021657          245 KVVDFHWNASDPWTV  259 (309)
Q Consensus       245 ~v~~~~~~~~~~~~~  259 (309)
                      .+.++++++++..++
T Consensus       273 ~~~~i~~~~~g~l~v  287 (300)
T 2qc5_A          273 EPHGITFGKDGSVWF  287 (300)
T ss_dssp             CCCCEEECTTSCEEE
T ss_pred             ccceeEeCCCCCEEE
Confidence            678999999877544

>2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413}

Probab=99.34  E-value=2.5e-10  Score=91.22  Aligned_cols=213  Identities=10%  Similarity=0.047  Sum_probs=125.1

Q ss_pred             ceEEEEECCCCCEEEEec--CCCcEEEEeCCccccccccCCccccccCCCCceeecCCCCCCCCcccCCCCCcCcccccc
Q 021657           11 AEFALAMCPTEPYVLSGG--KDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYN   88 (309)
Q Consensus        11 ~V~~~~~~~~~~~l~t~~--~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   88 (309)
                      .+..++++|+|+++++..  .++.++||.+.++... .+..       .                      .    ....
T Consensus        18 ~p~~va~~~~g~~~v~~~~~~~~~~~l~~~~~g~~~-~~p~-------~----------------------~----~~~~   63 (343)
T 2qe8_A           18 APGNITLTPDGRLFLSLHQFYQPEMQVAELTQDGLI-PFPP-------Q----------------------S----GNAI   63 (343)
T ss_dssp             CEEEEEECTTSCEEEEECGGGCCSCSEEEEETTEEE-ESCC-------C----------------------C----SSCC
T ss_pred             CcceEEECCCCCEEEEeCCCCCCceEEEEECCCCee-cCCC-------c----------------------c----cCcc
Confidence            578999999999998864  2344666766422100 0000       0                      0    0112


Q ss_pred             cccCCeEEEEEecCCCcEEEEEcC-----CCeEEEEEcCCCCcceEEEeec------cCCceeEEEeccCCCCeEEEEc-
Q 021657           89 GHEDTVEDVTFCPSSAQEFCSVGD-----DSCLILWDARVGTSPVIKVEKA------HDADLHCVDWNPLDDNLILTGS-  156 (309)
Q Consensus        89 ~~~~~v~~~~~~~~~~~~l~s~~~-----dg~i~iwd~~~~~~~~~~~~~~------~~~~v~~~~~~~~~~~~l~~~~-  156 (309)
                      .+-..+..+++++++ +++++-..     ++.|.+||+.+++  ....+..      +...+..+++++.++..+++-. 
T Consensus        64 ~~~~~p~gv~~d~~g-~L~v~D~g~~~~~~~~i~~~d~~tg~--~~~~~~~~~~~~~~~~~~~~v~vd~~~g~~yvtd~~  140 (343)
T 2qe8_A           64 ITFDTVLGIKSDGNG-IVWMLDNGNQSKSVPKLVAWDTLNNQ--LSRVIYLPPPITLSNSFVNDLAVDLIHNFVYISDPA  140 (343)
T ss_dssp             CCCSCEEEEEECSSS-EEEEEECHHHHTSCCEEEEEETTTTE--EEEEEECCTTTSCTTCCCCEEEEETTTTEEEEEECC
T ss_pred             cceeEeeEEEEcCCC-cEEEEcCCCCcCCCCeEEEEECCCCe--EEEEEECChhhcccccccceEEEecCCCEEEEEcCc
Confidence            355679999999998 66655433     5789999998776  3333322      2235689999983345556555 


Q ss_pred             --CCCcEEEEecCCCCCCCCCCceeeeccC-----------------------------CCCeeEEEEecCCCcEEEEec
Q 021657          157 --ADNSVRMFDRRNLTSNGVGSPINKFEGH-----------------------------SAAVLCVQWSPDKSSVFGSSA  205 (309)
Q Consensus       157 --~dg~i~i~d~~~~~~~~~~~~~~~~~~~-----------------------------~~~v~~~~~~~~~~~l~~~~~  205 (309)
                        .++.|.+||+.+      ++..+.+..|                             ...++.|+|+|+++.|+++..
T Consensus       141 ~~~~~~i~v~d~~~------g~~~r~~~~~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~~~~~gia~s~dg~~ly~~~~  214 (343)
T 2qe8_A          141 PDDKAALIRVDLQT------GLAARVLQGYPGIAPEDIDLVIDGVPVQIGQPDGTVIRPHLGVNGIVLDAENEWLYLSPM  214 (343)
T ss_dssp             SGGGCEEEEEETTT------CCEEEECTTCTTTSCCSCCCEETTEECBEECTTSCEECCCCCEEEEEECTTSCEEEEEES
T ss_pred             cCCCCeEEEEECCC------CCEEEEecCCCcccccccceeECCEEEEeccCCCceeceecccceeEeccCCCEEEEEeC
Confidence              678999999886      4433333221                             123688999999997765544


Q ss_pred             CCCcEEEEeCCcccccccCCCCCcCCCCcee--eeecCCCcceeeEEEccCCCeEEEEecCCCCCCCCCCeEEEEEcc
Q 021657          206 EDGLLNIWDYEKVGKKVEQGPRTTNYPAGLF--FQHAGHRDKVVDFHWNASDPWTVVSVSDDCDSTGGGGTLQIWRMS  281 (309)
Q Consensus       206 ~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~v~~~~~~~~~~~~~~s~s~d~~s~~~dg~v~vw~~~  281 (309)
                      ....+..++....... . .     ......  ....++......+++++++. ++++...+       +.|.+||..
T Consensus       215 ~~~~l~~~~~~~~~~~-~-~-----~~~~~~~~~~~~g~~g~pdgia~d~~G~-l~va~~~~-------~~V~~~d~~  277 (343)
T 2qe8_A          215 HSTSMYRIKSADLSNL-Q-L-----TDAELGSKIERYSEKPICDGISIDKDHN-IYVGDLAH-------SAIGVITSA  277 (343)
T ss_dssp             SCSEEEEEEHHHHTCT-T-C-----CHHHHHTTCEEEEECCSCSCEEECTTCC-EEEEEGGG-------TEEEEEETT
T ss_pred             CCCeEEEEEHHHhcCC-C-C-----ChhhhhcceEecccCCCCceEEECCCCC-EEEEccCC-------CeEEEEECC
Confidence            4445555543210000 0 0     000000  01123334567899999875 56555544       899999983

>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*

Probab=99.30  E-value=4.2e-09  Score=79.75  Aligned_cols=196  Identities=12%  Similarity=0.049  Sum_probs=130.2

Q ss_pred             eEEEEECCCCCEEEEecC--CCcEEEEeCCccccccccCCccccccCCCCceeecCCCCCCCCcccCCCCCcCccccccc
Q 021657           12 EFALAMCPTEPYVLSGGK--DKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNG   89 (309)
Q Consensus        12 V~~~~~~~~~~~l~t~~~--dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   89 (309)
                      ...++|+|++.++++.+.  ++.|++.|+.++.......                                      +..
T Consensus        23 ~~Gl~~~~dg~Lyvstg~~~~s~v~~iD~~tg~v~~~i~--------------------------------------l~~   64 (266)
T 2iwa_A           23 TQGLVYAENDTLFESTGLYGRSSVRQVALQTGKVENIHK--------------------------------------MDD   64 (266)
T ss_dssp             EEEEEECSTTEEEEEECSTTTCEEEEEETTTCCEEEEEE--------------------------------------CCT
T ss_pred             cccEEEeCCCeEEEECCCCCCCEEEEEECCCCCEEEEEe--------------------------------------cCC
Confidence            579999998765555543  6899999998653222110                                      111


Q ss_pred             ccCCeEEEEEecCCCcEEEEEcCCCeEEEEEcCCCCcceEEEeeccCCceeEEEeccCCCCeEEEEcCCCcEEEEecCCC
Q 021657           90 HEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNL  169 (309)
Q Consensus        90 ~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~  169 (309)
                      + .....+++.  +..++++.-.++.+.++|..+.+  ....+......  ...+++ ++..++++..++.|.++|..+ 
T Consensus        65 ~-~fgeGi~~~--g~~lyv~t~~~~~v~viD~~t~~--v~~~i~~g~~~--g~glt~-Dg~~l~vs~gs~~l~viD~~t-  135 (266)
T 2iwa_A           65 S-YFGEGLTLL--NEKLYQVVWLKNIGFIYDRRTLS--NIKNFTHQMKD--GWGLAT-DGKILYGSDGTSILYEIDPHT-  135 (266)
T ss_dssp             T-CCEEEEEEE--TTEEEEEETTCSEEEEEETTTTE--EEEEEECCSSS--CCEEEE-CSSSEEEECSSSEEEEECTTT-
T ss_pred             C-cceEEEEEe--CCEEEEEEecCCEEEEEECCCCc--EEEEEECCCCC--eEEEEE-CCCEEEEECCCCeEEEEECCC-
Confidence            1 112345554  43667777788999999998877  45555332122  234555 667666667789999999998 


Q ss_pred             CCCCCCCceeeeccCC-----CCeeEEEEecCCCcEEEEecCCCcEEEEeCCcccccccCCCCCcCCCCceeeeecC---
Q 021657          170 TSNGVGSPINKFEGHS-----AAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAG---  241 (309)
Q Consensus       170 ~~~~~~~~~~~~~~~~-----~~v~~~~~~~~~~~l~~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~---  241 (309)
                           .+.+..+....     ..++.+.|. ++. +++....++.|.+.|..+ ++.              +..+..   
T Consensus       136 -----~~v~~~I~Vg~~~~p~~~~nele~~-dg~-lyvn~~~~~~V~vID~~t-g~V--------------~~~I~~~g~  193 (266)
T 2iwa_A          136 -----FKLIKKHNVKYNGHRVIRLNELEYI-NGE-VWANIWQTDCIARISAKD-GTL--------------LGWILLPNL  193 (266)
T ss_dssp             -----CCEEEEEECEETTEECCCEEEEEEE-TTE-EEEEETTSSEEEEEETTT-CCE--------------EEEEECHHH
T ss_pred             -----CcEEEEEEECCCCcccccceeEEEE-CCE-EEEecCCCCeEEEEECCC-CcE--------------EEEEECCCc
Confidence                 77777765322     136788888 664 787777789999999987 222              111111   


Q ss_pred             ----------CCcceeeEEEccCCCeEEEEecCCCCCCCCCCeEEEEEcccc
Q 021657          242 ----------HRDKVVDFHWNASDPWTVVSVSDDCDSTGGGGTLQIWRMSDL  283 (309)
Q Consensus       242 ----------~~~~v~~~~~~~~~~~~~~s~s~d~~s~~~dg~v~vw~~~~~  283 (309)
                                .....+.++|+|++..+++++...       +.|.+-++...
T Consensus       194 ~~~~~~~~~~~~~v~nGIa~~~~~~~lfVTgk~~-------~~v~~i~l~~~  238 (266)
T 2iwa_A          194 RKKLIDEGFRDIDVLNGIAWDQENKRIFVTGKLW-------PKLFEIKLHLV  238 (266)
T ss_dssp             HHHHHHTTCTTCCCEEEEEEETTTTEEEEEETTC-------SEEEEEEEEEC
T ss_pred             ccccccccccccCceEEEEEcCCCCEEEEECCCC-------CeEEEEEEecc
Confidence                      113568999999999999866554       89999999854

>1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum}

Probab=99.29  E-value=4.4e-10  Score=99.17  Aligned_cols=167  Identities=10%  Similarity=-0.000  Sum_probs=101.8

Q ss_pred             ccCCeEEEEEecCCCcEEEEEcC-C----CeEEEEEcCCCCcceEEEeeccCCceeEEEeccCCCCeEEEEcCCCc----
Q 021657           90 HEDTVEDVTFCPSSAQEFCSVGD-D----SCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNS----  160 (309)
Q Consensus        90 ~~~~v~~~~~~~~~~~~l~s~~~-d----g~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~----  160 (309)
                      |...+..+.|+||| ++|+.+.. +    ..|++||+.+++.  ... ..+...+..++|+| + +.|+.+..++.    
T Consensus       161 ~~~~~~~~~~SPDG-~~la~~~~~~G~e~~~i~v~dl~tg~~--~~~-~~~~~~~~~~~wsp-D-~~l~~~~~~~~~~~~  234 (741)
T 1yr2_A          161 GATALDAWAASDDG-RLLAYSVQDGGSDWRTVKFVGVADGKP--LAD-ELKWVKFSGLAWLG-N-DALLYSRFAEPKEGQ  234 (741)
T ss_dssp             --EEEEEEEECTTS-SEEEEEEEETTCSEEEEEEEETTTCCE--EEE-EEEEEESCCCEEST-T-SEEEEEECCCC----
T ss_pred             CCEEEEeEEECCCC-CEEEEEEcCCCCceEEEEEEECCCCCC--CCc-cCCCceeccEEEEC-C-CEEEEEEecCccccc
Confidence            33468899999999 55555443 3    3599999998873  222 11222346889999 7 87877776554    


Q ss_pred             ----------EEEEecCCCCCCCCCCceeeeccCCCCeeEEEEecCCCcEEEEecC----CCcEEEEeCCcccccccCCC
Q 021657          161 ----------VRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAE----DGLLNIWDYEKVGKKVEQGP  226 (309)
Q Consensus       161 ----------i~i~d~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~----dg~i~iwd~~~~~~~~~~~~  226 (309)
                                |++|++.+....  ...+.....+...+..+.|+|||++++.+...    +..|++||+.....      
T Consensus       235 ~~~~~~~~~~v~~~~lgt~~~~--~~lv~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~l~~~d~~~~~~------  306 (741)
T 1yr2_A          235 AFQALNYNQTVWLHRLGTPQSA--DQPVFATPELPKRGHGASVSSDGRWVVITSSEGTDPVNTVHVARVTNGKI------  306 (741)
T ss_dssp             ----CCCCCEEEEEETTSCGGG--CEEEECCTTCTTCEEEEEECTTSCEEEEEEECTTCSCCEEEEEEEETTEE------
T ss_pred             ccccCCCCCEEEEEECCCCchh--CEEEeccCCCCeEEEEEEECCCCCEEEEEEEccCCCcceEEEEECCCCCC------
Confidence                      889998763210  01222222233458899999999986655432    34799999876200      


Q ss_pred             CCcCCCCceeeeecCCCcceeeEEEccCCCeEEEEecCCCCCCCCCCeEEEEEccc
Q 021657          227 RTTNYPAGLFFQHAGHRDKVVDFHWNASDPWTVVSVSDDCDSTGGGGTLQIWRMSD  282 (309)
Q Consensus       227 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~s~d~~s~~~dg~v~vw~~~~  282 (309)
                             .....+..+...+.... +|++..+++....    ++.++.|.+||+..
T Consensus       307 -------~~~~~l~~~~~~~~~~~-~~dg~~l~~~s~~----~~~~~~l~~~d~~~  350 (741)
T 1yr2_A          307 -------GPVTALIPDLKAQWDFV-DGVGDQLWFVSGD----GAPLKKIVRVDLSG  350 (741)
T ss_dssp             -------CCCEEEECSSSSCEEEE-EEETTEEEEEECT----TCTTCEEEEEECSS
T ss_pred             -------cccEEecCCCCceEEEE-eccCCEEEEEECC----CCCCCEEEEEeCCC
Confidence                   00122333444444443 4888887766543    23457899999873

>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...

Probab=99.27  E-value=1.5e-10  Score=92.36  Aligned_cols=243  Identities=9%  Similarity=0.061  Sum_probs=145.2

Q ss_pred             EEEECCCCCEEEEec----------CCCcEEEEeCCccccccccCC-----------ccccccCCCCceeecCCCCCCCC
Q 021657           14 ALAMCPTEPYVLSGG----------KDKSVVLWSIQDHITSSATDP-----------ATAKSAGSSGSIIKQSPKPGDGN   72 (309)
Q Consensus        14 ~~~~~~~~~~l~t~~----------~dg~i~vwd~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~   72 (309)
                      .++++|||++|+.+.          .++.|.+||..+.........           .......................
T Consensus        82 ~va~spDG~~lyVan~~~~r~~~G~~~~~VsviD~~t~~v~~~I~v~~g~r~~~g~~P~~~a~spDGk~lyVan~~~~~~  161 (386)
T 3sjl_D           82 NPVVADDGSFIAHASTVFSRIARGERTDYVEVFDPVTLLPTADIELPDAPRFLVGTYPWMTSLTPDGKTLLFYQFSPAPA  161 (386)
T ss_dssp             EEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCCEEEEEEETTCCCCCBSCCGGGEEECTTSSEEEEEECSSSCE
T ss_pred             cEEECCCCCEEEEEcccccccccCCCCCEEEEEECCCCeEEEEEECCCccccccCCCCceEEEcCCCCEEEEEEcCCCCe
Confidence            399999999887765          367899999998743332211           11112222233333332233567


Q ss_pred             cccCCCCCcCcccccccccCCeEEEEEecCCCcEEEEEcCCCeEEEEEcCC-CCcceEEEeecc----CCcee-EEEecc
Q 021657           73 DKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARV-GTSPVIKVEKAH----DADLH-CVDWNP  146 (309)
Q Consensus        73 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~-~~~~~~~~~~~~----~~~v~-~~~~~~  146 (309)
                      +.++|..+.+.+..+.-..    +....|.+.+.+++.+.||.+.+.++.. ++.  ......+    ..++. ...|.+
T Consensus       162 VsVID~~t~~vv~tI~v~g----~~~~~P~g~~~~~~~~~DG~~~~v~~~~~g~v--~~~~~~~~~~~~~~~~~~~~~~~  235 (386)
T 3sjl_D          162 VGVVDLEGKAFKRMLDVPD----CYHIFPTAPDTFFMHCRDGSLAKVAFGTEGTP--EITHTEVFHPEDEFLINHPAYSQ  235 (386)
T ss_dssp             EEEEETTTTEEEEEEECCS----EEEEEEEETTEEEEEETTSCEEEEECCSSSCC--EEEECCCCSCTTSCBCSCCEEET
T ss_pred             EEEEECCCCcEEEEEECCC----cceeecCCCceeEEECCCCCEEEEECCCCCeE--EEeecceeccccccccccceeEc
Confidence            7788888887777664321    1223355556778888999999999876 442  2211111    12221 245543


Q ss_pred             CCCCeEEEEcCCCcEEEEecCCCCCCCCCCceeeec----------cCCCCeeEEEEecCCCcEEEEecC---------C
Q 021657          147 LDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFE----------GHSAAVLCVQWSPDKSSVFGSSAE---------D  207 (309)
Q Consensus       147 ~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~----------~~~~~v~~~~~~~~~~~l~~~~~~---------d  207 (309)
                      .++++++ .+.+|.+++.|+....    .+.+..+.          ........+++++++..++++...         .
T Consensus       236 ~dG~~~~-vs~~g~V~v~d~~~~~----~~v~~~~~~~~~~~~~~g~~p~g~q~~a~~~~~~~lyV~~~~~~~~~hk~~~  310 (386)
T 3sjl_D          236 KAGRLVW-PTYTGKIHQIDLSSGD----AKFLPAVEALTEAERADGWRPGGWQQVAYHRALDRIYLLVDQRDEWRHKTAS  310 (386)
T ss_dssp             TTTEEEE-EBTTSEEEEEECTTSS----CEECCCEESSCHHHHHTTEEECSSSCEEEETTTTEEEEEEEECCTTCTTSCE
T ss_pred             CCCcEEE-EeCCCEEEEEECCCCc----ceeecceeccccccccccccCCCcceeeECCCCCeEEEEeccccccccCCCC
Confidence            1665555 4558999999997621    11222221          012234457889999988865431         2


Q ss_pred             CcEEEEeCCcccccccCCCCCcCCCCceeeeecCCCcceeeEEEccCCC-eEEEEecCCCCCCCCCCeEEEEEccccccC
Q 021657          208 GLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKVVDFHWNASDP-WTVVSVSDDCDSTGGGGTLQIWRMSDLIYR  286 (309)
Q Consensus       208 g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~~~~s~s~d~~s~~~dg~v~vw~~~~~~~~  286 (309)
                      +.|.++|+.+               .+.+..+.. ...+.+++++|++. .|+++...+       +.|.++|..     
T Consensus       311 ~~V~viD~~t---------------~kv~~~i~v-g~~~~~lavs~D~~~~ly~tn~~~-------~~VsViD~~-----  362 (386)
T 3sjl_D          311 RFVVVLDAKT---------------GERLAKFEM-GHEIDSINVSQDEKPLLYALSTGD-------KTLYIHDAE-----  362 (386)
T ss_dssp             EEEEEEETTT---------------CCEEEEEEE-EEEECEEEECSSSSCEEEEEETTT-------TEEEEEETT-----
T ss_pred             CEEEEEECCC---------------CeEEEEEEC-CCCcceEEECCCCCeEEEEEcCCC-------CeEEEEECC-----
Confidence            5799999988               222222221 23688999999986 666544434       899999998     


Q ss_pred             ChhhHhHhhh
Q 021657          287 PQDEVLAELE  296 (309)
Q Consensus       287 ~~~~~~~~~~  296 (309)
                       +++.+++++
T Consensus       363 -t~k~~~~i~  371 (386)
T 3sjl_D          363 -SGEELRSVN  371 (386)
T ss_dssp             -TCCEEEEEC
T ss_pred             -CCcEEEEec
Confidence             666666654

>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1

Probab=99.26  E-value=4.4e-09  Score=83.39  Aligned_cols=191  Identities=9%  Similarity=0.050  Sum_probs=115.3

Q ss_pred             ceEEEEECCCCCEEEEecCCCcEEEEeCCccccccccCCccccccCCCCceeecCCCCCCCCcccCCCCCcCcccccccc
Q 021657           11 AEFALAMCPTEPYVLSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGH   90 (309)
Q Consensus        11 ~V~~~~~~~~~~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   90 (309)
                      .|.+++|+|+|+++++. .+ .|.+||.+++........                             .       ....
T Consensus        91 ~v~~i~~~~dg~l~v~~-~~-gl~~~d~~~g~~~~~~~~-----------------------------~-------~~~~  132 (326)
T 2ghs_A           91 MGSALAKISDSKQLIAS-DD-GLFLRDTATGVLTLHAEL-----------------------------E-------SDLP  132 (326)
T ss_dssp             CEEEEEEEETTEEEEEE-TT-EEEEEETTTCCEEEEECS-----------------------------S-------TTCT
T ss_pred             cceEEEEeCCCeEEEEE-CC-CEEEEECCCCcEEEEeeC-----------------------------C-------CCCC
Confidence            57899999999877754 33 488888765321100000                             0       0001


Q ss_pred             cCCeEEEEEecCCCcEEEEEcC------CCeEEEEEcCCCCcceEEEeeccCCceeEEEeccCCCCeE-EEEcCCCcEEE
Q 021657           91 EDTVEDVTFCPSSAQEFCSVGD------DSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLI-LTGSADNSVRM  163 (309)
Q Consensus        91 ~~~v~~~~~~~~~~~~l~s~~~------dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l-~~~~~dg~i~i  163 (309)
                      ...++++.++|+| +++++...      .+.|..++  +++   ...+.........++|+| +++.+ ++.+.++.|.+
T Consensus       133 ~~~~~~i~~d~~G-~l~v~~~~~~~~~~~~~l~~~~--~g~---~~~~~~~~~~~~~i~~s~-dg~~lyv~~~~~~~I~~  205 (326)
T 2ghs_A          133 GNRSNDGRMHPSG-ALWIGTMGRKAETGAGSIYHVA--KGK---VTKLFADISIPNSICFSP-DGTTGYFVDTKVNRLMR  205 (326)
T ss_dssp             TEEEEEEEECTTS-CEEEEEEETTCCTTCEEEEEEE--TTE---EEEEEEEESSEEEEEECT-TSCEEEEEETTTCEEEE
T ss_pred             CCCCCCEEECCCC-CEEEEeCCCcCCCCceEEEEEe--CCc---EEEeeCCCcccCCeEEcC-CCCEEEEEECCCCEEEE
Confidence            2358899999998 55554432      24555555  333   222223334567899999 88765 44456789999


Q ss_pred             EecC--CC-CCCCCCCceeeeccCCCCeeEEEEecCCCcEEEEecCCCcEEEEeCCcccccccCCCCCcCCCCceeeeec
Q 021657          164 FDRR--NL-TSNGVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHA  240 (309)
Q Consensus       164 ~d~~--~~-~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~  240 (309)
                      ||+.  +. .... .+....+......+..+++.++|. ++++...++.|.+||...                ..+..+.
T Consensus       206 ~d~~~~~Gl~~~~-~~~~~~~~~~~~~p~gi~~d~~G~-lwva~~~~~~v~~~d~~g----------------~~~~~i~  267 (326)
T 2ghs_A          206 VPLDARTGLPTGK-AEVFIDSTGIKGGMDGSVCDAEGH-IWNARWGEGAVDRYDTDG----------------NHIARYE  267 (326)
T ss_dssp             EEBCTTTCCBSSC-CEEEEECTTSSSEEEEEEECTTSC-EEEEEETTTEEEEECTTC----------------CEEEEEE
T ss_pred             EEcccccCCcccC-ceEEEECCCCCCCCCeeEECCCCC-EEEEEeCCCEEEEECCCC----------------CEEEEEE
Confidence            9986  31 1000 012223333345578899999997 555555568899998732                1233344


Q ss_pred             CCCcceeeEEEc-cCCCeEEEEecC
Q 021657          241 GHRDKVVDFHWN-ASDPWTVVSVSD  264 (309)
Q Consensus       241 ~~~~~v~~~~~~-~~~~~~~~s~s~  264 (309)
                      .+...+.+++|+ |++..|+++...
T Consensus       268 ~~~~~~~~~af~g~d~~~L~vt~~~  292 (326)
T 2ghs_A          268 VPGKQTTCPAFIGPDASRLLVTSAR  292 (326)
T ss_dssp             CSCSBEEEEEEESTTSCEEEEEEBC
T ss_pred             CCCCCcEEEEEecCCCCEEEEEecC
Confidence            455678999998 888877776554

>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1

Probab=99.25  E-value=3e-08  Score=76.19  Aligned_cols=204  Identities=6%  Similarity=-0.068  Sum_probs=127.5

Q ss_pred             eEEEEECCCCCE-EEEecCCCcEEEEeCCccccccccCCccccccCCCCceeecCCCCCCCCcccCCCCCcCcccccccc
Q 021657           12 EFALAMCPTEPY-VLSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGH   90 (309)
Q Consensus        12 V~~~~~~~~~~~-l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   90 (309)
                      +..++|++++.. +++-..++.|.++++.....                                        ...+...
T Consensus        38 ~~gi~~d~~~~~ly~~d~~~~~I~~~~~~g~~~----------------------------------------~~~~~~~   77 (267)
T 1npe_A           38 IIGLAFDCVDKVVYWTDISEPSIGRASLHGGEP----------------------------------------TTIIRQD   77 (267)
T ss_dssp             EEEEEEETTTTEEEEEETTTTEEEEEESSSCCC----------------------------------------EEEECTT
T ss_pred             EEEEEEecCCCEEEEEECCCCEEEEEecCCCCc----------------------------------------EEEEECC
Confidence            468899986554 45666678999999864210                                        0001111


Q ss_pred             cCCeEEEEEecCCCcEEEEEcCCCeEEEEEcCCCCcceEEEeeccCCceeEEEeccCCCCeEEEEcC---CCcEEEEecC
Q 021657           91 EDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSA---DNSVRMFDRR  167 (309)
Q Consensus        91 ~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~---dg~i~i~d~~  167 (309)
                      ......++++++++.++++-...+.|.++++....  ..............++++| ++..|..+..   .+.|..+++.
T Consensus        78 ~~~p~~ia~d~~~~~lyv~d~~~~~I~~~~~~g~~--~~~~~~~~~~~P~~i~vd~-~~g~lyv~~~~~~~~~I~~~~~d  154 (267)
T 1npe_A           78 LGSPEGIALDHLGRTIFWTDSQLDRIEVAKMDGTQ--RRVLFDTGLVNPRGIVTDP-VRGNLYWTDWNRDNPKIETSHMD  154 (267)
T ss_dssp             CCCEEEEEEETTTTEEEEEETTTTEEEEEETTSCS--CEEEECSSCSSEEEEEEET-TTTEEEEEECCSSSCEEEEEETT
T ss_pred             CCCccEEEEEecCCeEEEEECCCCEEEEEEcCCCC--EEEEEECCCCCccEEEEee-CCCEEEEEECCCCCcEEEEEecC
Confidence            23568899999765777777778899999986443  2222222224578999999 5555444433   4688888876


Q ss_pred             CCCCCCCCCceeeec-cCCCCeeEEEEecCCCcEEEEecCCCcEEEEeCCcccccccCCCCCcCCCCceeeeecCCCcce
Q 021657          168 NLTSNGVGSPINKFE-GHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKV  246 (309)
Q Consensus       168 ~~~~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~l~~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v  246 (309)
                      .       .....+. ..-.....+++++++.+|+++-...+.|.++|+......             .+  ... ....
T Consensus       155 g-------~~~~~~~~~~~~~P~gia~d~~~~~lyv~d~~~~~I~~~~~~g~~~~-------------~~--~~~-~~~P  211 (267)
T 1npe_A          155 G-------TNRRILAQDNLGLPNGLTFDAFSSQLCWVDAGTHRAECLNPAQPGRR-------------KV--LEG-LQYP  211 (267)
T ss_dssp             S-------CCCEEEECTTCSCEEEEEEETTTTEEEEEETTTTEEEEEETTEEEEE-------------EE--EEC-CCSE
T ss_pred             C-------CCcEEEEECCCCCCcEEEEcCCCCEEEEEECCCCEEEEEecCCCceE-------------EE--ecC-CCCc
Confidence            4       2222221 223467899999998888888888899999998752110             11  111 1223


Q ss_pred             eeEEEccCCCeEEEEecCCCCCCCCCCeEEEEEccccccCChhhHhHhhh
Q 021657          247 VDFHWNASDPWTVVSVSDDCDSTGGGGTLQIWRMSDLIYRPQDEVLAELE  296 (309)
Q Consensus       247 ~~~~~~~~~~~~~~s~s~d~~s~~~dg~v~vw~~~~~~~~~~~~~~~~~~  296 (309)
                      ..++..  +..++++....       +.|..+|..      +++.+.++.
T Consensus       212 ~gi~~d--~~~lyva~~~~-------~~v~~~d~~------~g~~~~~i~  246 (267)
T 1npe_A          212 FAVTSY--GKNLYYTDWKT-------NSVIAMDLA------ISKEMDTFH  246 (267)
T ss_dssp             EEEEEE--TTEEEEEETTT-------TEEEEEETT------TTEEEEEEC
T ss_pred             eEEEEe--CCEEEEEECCC-------CeEEEEeCC------CCCceEEEc
Confidence            456543  56777755444       789999987      455555554

>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}

Probab=99.22  E-value=3.8e-10  Score=91.69  Aligned_cols=242  Identities=7%  Similarity=0.005  Sum_probs=145.1

Q ss_pred             EEEECCCCCEEEEec----------CCCcEEEEeCCccccccccCC-----------ccccccCCCCceeecCCCCCCCC
Q 021657           14 ALAMCPTEPYVLSGG----------KDKSVVLWSIQDHITSSATDP-----------ATAKSAGSSGSIIKQSPKPGDGN   72 (309)
Q Consensus        14 ~~~~~~~~~~l~t~~----------~dg~i~vwd~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~   72 (309)
                      .++++||+++|+.+.          .++.|.++|..+.........           ......+......+.........
T Consensus       122 gia~SpDgk~lyVan~~~~~~~~G~~~~~VsviD~~t~~vv~~I~v~g~~r~~~g~~P~~~~~spDGk~lyV~n~~~~~~  201 (426)
T 3c75_H          122 HPVAAEDGSFFAQASTVFERIARGKRTDYVEVFDPVTFLPIADIELPDAPRFLVGTYQWMNALTPDNKNLLFYQFSPAPA  201 (426)
T ss_dssp             EEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCCEEEEEEETTCCCCCBSCCGGGSEECTTSSEEEEEECSSSCE
T ss_pred             ceEECCCCCEEEEEeccccccccCCCCCEEEEEECCCCcEEEEEECCCccccccCCCcceEEEcCCCCEEEEEecCCCCe
Confidence            789999999888775          477999999988743322211           11112222222223222223456


Q ss_pred             cccCCCCCcCcccccccccCCeEEEEEecCCCcEEEEEcCCCeEEEEEcCCCCcceEEE----eeccCCc-eeEEEeccC
Q 021657           73 DKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPVIKV----EKAHDAD-LHCVDWNPL  147 (309)
Q Consensus        73 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~----~~~~~~~-v~~~~~~~~  147 (309)
                      +.+.|..+.+.+..+.--.    +....|++...+++.+.||.+.+.+..+++  ....    +.....+ ...+.+.+ 
T Consensus       202 VsVID~~t~kvv~~I~v~g----~~~~~p~g~~~~v~~~~dG~~~~V~~~~~~--v~~~~~~~~~v~~~p~~~~~~~~~-  274 (426)
T 3c75_H          202 VGVVDLEGKTFDRMLDVPD----CYHIFPASPTVFYMNCRDGSLARVDFADGE--TKVTNTEVFHTEDELLINHPAFSL-  274 (426)
T ss_dssp             EEEEETTTTEEEEEEECCS----EEEEEEEETTEEEEEETTSSEEEEECCTTC--CEEEECCCCSCTTSCBCSCCEECT-
T ss_pred             EEEEECCCCeEEEEEEcCC----ceeeccCCCcEEEEEcCCCCEEEEECCCCc--EEEEeeeeeccCCCceeeEeeecC-
Confidence            7777777777666554311    133456555677778889998888885554  2211    1111112 12456788 


Q ss_pred             CCCeEEEEcCCCcEEEEecCCCCCCCCCCceeeecc----------CCCCeeEEEEecCCCcEEEEec---------CCC
Q 021657          148 DDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEG----------HSAAVLCVQWSPDKSSVFGSSA---------EDG  208 (309)
Q Consensus       148 ~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~----------~~~~v~~~~~~~~~~~l~~~~~---------~dg  208 (309)
                      ++..++.....+.+.+.|+....    ...+..+..          .......++++|++.+++++..         .++
T Consensus       275 dg~~~~~~s~~g~V~ViD~~~~~----~~v~~~~~~~~~~~i~~g~~p~g~~~va~s~dg~rlyVa~~~~~~gthk~~s~  350 (426)
T 3c75_H          275 RSGRLVWPTYTGKIFQADLTAEG----ATFRAPIEALTEAERADDWRPGGWQQTAYHRQSDRIYLLVDQRDEWKHKAASR  350 (426)
T ss_dssp             TTCEEEEEBTTSEEEEEEECSSC----EEECCCEESSCTTTGGGTEEECSSSCEEEEGGGTEEEEEEEECCTTCTTSCEE
T ss_pred             CCCEEEEEeCCCcEEEEeccCCc----eEEeeeeeeccccccccccccCCceeeEEcCCCCEEEEEecccccccccCCCC
Confidence            77766666778999999986521    001111110          0112234789999998876643         135


Q ss_pred             cEEEEeCCcccccccCCCCCcCCCCceeeeecCCCcceeeEEEccCCC-eEEEEecCCCCCCCCCCeEEEEEccccccCC
Q 021657          209 LLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKVVDFHWNASDP-WTVVSVSDDCDSTGGGGTLQIWRMSDLIYRP  287 (309)
Q Consensus       209 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~~~~s~s~d~~s~~~dg~v~vw~~~~~~~~~  287 (309)
                      .|.++|+.+               .+.+..+.. ......++|+|++. .++++...+       +.|.++|+.      
T Consensus       351 ~VsVID~~T---------------~kvv~~I~v-g~~P~gia~spDg~~~lyv~n~~s-------~~VsVID~~------  401 (426)
T 3c75_H          351 FVVVLNAET---------------GERINKIEL-GHEIDSINVSQDAEPLLYALSAGT-------QTLHIYDAA------  401 (426)
T ss_dssp             EEEEEETTT---------------CCEEEEEEE-EEEECEEEECCSSSCEEEEEETTT-------TEEEEEETT------
T ss_pred             EEEEEECCC---------------CeEEEEEEC-CCCcCeEEEccCCCEEEEEEcCCC-------CeEEEEECC------
Confidence            799999988               223333322 12578999999998 666554344       899999999      


Q ss_pred             hhhHhHhh
Q 021657          288 QDEVLAEL  295 (309)
Q Consensus       288 ~~~~~~~~  295 (309)
                      +.+.++++
T Consensus       402 t~kvv~tI  409 (426)
T 3c75_H          402 TGEELRSV  409 (426)
T ss_dssp             TCCEEEEE
T ss_pred             CCCEEEEe
Confidence            56666654

>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}

Probab=99.22  E-value=3.9e-09  Score=82.85  Aligned_cols=183  Identities=9%  Similarity=0.078  Sum_probs=115.1

Q ss_pred             ceEEEEECCCCCEEEEecCCCcEEEEeCCccccccccCCccccccCCCCceeecCCCCCCCCcccCCCCCcCccccccc-
Q 021657           11 AEFALAMCPTEPYVLSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNG-   89 (309)
Q Consensus        11 ~V~~~~~~~~~~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-   89 (309)
                      .+..++++++|+++++...++.|.+|+.+.......                                      ....+ 
T Consensus        87 ~~~gl~~d~dG~l~v~~~~~~~v~~~~~~g~~~~~~--------------------------------------~~~~~~  128 (305)
T 3dr2_A           87 FTNGNAVDAQQRLVHCEHGRRAITRSDADGQAHLLV--------------------------------------GRYAGK  128 (305)
T ss_dssp             CEEEEEECTTSCEEEEETTTTEEEEECTTSCEEEEE--------------------------------------CEETTE
T ss_pred             ccceeeECCCCCEEEEECCCCEEEEECCCCCEEEEE--------------------------------------eccCCC
Confidence            578999999999777766778899998752110000                                      00000 


Q ss_pred             ccCCeEEEEEecCCCcEEEE----EcC-------------CCeEEEEEcCCCCcceEEEeeccCCceeEEEeccCCCCeE
Q 021657           90 HEDTVEDVTFCPSSAQEFCS----VGD-------------DSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLI  152 (309)
Q Consensus        90 ~~~~v~~~~~~~~~~~~l~s----~~~-------------dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l  152 (309)
                      ....++++.+.++| .++++    |..             .+.|..+|..+++.  ....  .......++|+| +++.|
T Consensus       129 ~~~~~~~i~~d~dG-~l~~td~~~g~~~~~~~~~~~~~~~~~~v~~~d~~~g~~--~~~~--~~~~p~gl~~sp-dg~~l  202 (305)
T 3dr2_A          129 RLNSPNDLIVARDG-AIWFTDPPFGLRKPSQGCPADPELAHHSVYRLPPDGSPL--QRMA--DLDHPNGLAFSP-DEQTL  202 (305)
T ss_dssp             ECSCCCCEEECTTS-CEEEECCSGGGSCGGGSCCCCCSSSCEEEEEECSSSCCC--EEEE--EESSEEEEEECT-TSSEE
T ss_pred             ccCCCCCEEECCCC-CEEEeCcCCCccccccccccccccCCCeEEEEcCCCCcE--EEEe--cCCCCcceEEcC-CCCEE
Confidence            12346789999998 66665    332             25677888766662  2222  334567899999 88877


Q ss_pred             EEEcCC------CcEEEEecCCCCCCCCCCc--eeee-ccCCCCeeEEEEecCCCcEEEEecCCCcEEEEeCCccccccc
Q 021657          153 LTGSAD------NSVRMFDRRNLTSNGVGSP--INKF-EGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVE  223 (309)
Q Consensus       153 ~~~~~d------g~i~i~d~~~~~~~~~~~~--~~~~-~~~~~~v~~~~~~~~~~~l~~~~~~dg~i~iwd~~~~~~~~~  223 (309)
                      +.+...      +.|.+||+..      ...  ...+ .........++++++|. ++ ++..+ .|.+|+...      
T Consensus       203 yv~~~~~~~~~~~~i~~~~~~~------~~l~~~~~~~~~~~~~pdgi~~d~~G~-lw-v~~~~-gv~~~~~~g------  267 (305)
T 3dr2_A          203 YVSQTPEQGHGSVEITAFAWRD------GALHDRRHFASVPDGLPDGFCVDRGGW-LW-SSSGT-GVCVFDSDG------  267 (305)
T ss_dssp             EEEECCC---CCCEEEEEEEET------TEEEEEEEEECCSSSCCCSEEECTTSC-EE-ECCSS-EEEEECTTS------
T ss_pred             EEEecCCcCCCCCEEEEEEecC------CCccCCeEEEECCCCCCCeEEECCCCC-EE-EecCC-cEEEECCCC------
Confidence            776554      7899999875      221  1111 11234456789999998 55 44444 488998743      


Q ss_pred             CCCCCcCCCCceeeeecCCCcceeeEEEccCCCeEEEEec
Q 021657          224 QGPRTTNYPAGLFFQHAGHRDKVVDFHWNASDPWTVVSVS  263 (309)
Q Consensus       224 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~s  263 (309)
                                ..+..+..+. .+..++|+|++..|+++.+
T Consensus       268 ----------~~~~~~~~~~-~~~~~~f~~d~~~L~it~~  296 (305)
T 3dr2_A          268 ----------QLLGHIPTPG-TASNCTFDQAQQRLFITGG  296 (305)
T ss_dssp             ----------CEEEEEECSS-CCCEEEECTTSCEEEEEET
T ss_pred             ----------CEEEEEECCC-ceeEEEEeCCCCEEEEEcC
Confidence                      1223333333 5889999998888887654

>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*

Probab=99.21  E-value=1.2e-08  Score=82.32  Aligned_cols=105  Identities=16%  Similarity=0.120  Sum_probs=75.2

Q ss_pred             EEEEecCCCcEEEEEc----------CCCeEEEEEcCCCCcceEEEeecc-------CCceeEEEeccCCCCeEEEEcC-
Q 021657           96 DVTFCPSSAQEFCSVG----------DDSCLILWDARVGTSPVIKVEKAH-------DADLHCVDWNPLDDNLILTGSA-  157 (309)
Q Consensus        96 ~~~~~~~~~~~l~s~~----------~dg~i~iwd~~~~~~~~~~~~~~~-------~~~v~~~~~~~~~~~~l~~~~~-  157 (309)
                      .+.++|++ +.++.+.          .++.|.+||..+.+  ....+...       ......++|+| ++++|+++.. 
T Consensus        70 ~i~~spDg-~~lyv~n~~~~~~~rg~~~~~v~viD~~t~~--~~~~i~~~~~~~~~~g~~p~~~~~sp-DG~~l~v~n~~  145 (373)
T 2mad_H           70 NPVAAHSG-SEFALASTSFSRIAKGKRTDYVEVFDPVTFL--PIADIELPDAPRFDVGPYSWMNANTP-NNADLLFFQFA  145 (373)
T ss_pred             CeEECCCC-CEEEEEeccccccccCCCCCeEEEEECCCCc--EEEEEECCCccccccCCCccceEECC-CCCEEEEEecC
Confidence            89999999 5555543          36789999998776  33333211       12356899999 9999888764 


Q ss_pred             -CCcEEEEecCCCCCCCCCCceee-eccCCCCeeEEEEecCCCcEEEEecCCCcEEEEeC
Q 021657          158 -DNSVRMFDRRNLTSNGVGSPINK-FEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDY  215 (309)
Q Consensus       158 -dg~i~i~d~~~~~~~~~~~~~~~-~~~~~~~v~~~~~~~~~~~l~~~~~~dg~i~iwd~  215 (309)
                       ++.|.++| .+      ++.+.+ +... .   ++.+.|++...+++.+.||.+.++|.
T Consensus       146 ~~~~v~viD-~t------~~~~~~~i~~~-~---~~~~~~~~~~~~~~~~~dg~~~~vd~  194 (373)
T 2mad_H          146 AGPAVGLVV-QG------GSSDDQLLSSP-T---CYHIHPGAPSTFYLLCAQGGLAKTDH  194 (373)
T ss_pred             CCCeEEEEE-CC------CCEEeEEcCCC-c---eEEEEeCCCceEEEEcCCCCEEEEEC
Confidence             57899999 88      777776 5432 2   25566777666777888999988888

>2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413}

Probab=99.20  E-value=3.2e-09  Score=84.77  Aligned_cols=202  Identities=9%  Similarity=0.060  Sum_probs=120.4

Q ss_pred             CCCCcceEEEEECCCCCEEEEecC-----CCcEEEEeCCccccccccCCccccccCCCCceeecCCCCCCCCcccCCCCC
Q 021657            6 GHQDNAEFALAMCPTEPYVLSGGK-----DKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPS   80 (309)
Q Consensus         6 ~H~~~~V~~~~~~~~~~~l~t~~~-----dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (309)
                      +|.. .+.+++++++++++++-..     ++.|.+||+.++........                             . 
T Consensus        64 ~~~~-~p~gv~~d~~g~L~v~D~g~~~~~~~~i~~~d~~tg~~~~~~~~-----------------------------~-  112 (343)
T 2qe8_A           64 ITFD-TVLGIKSDGNGIVWMLDNGNQSKSVPKLVAWDTLNNQLSRVIYL-----------------------------P-  112 (343)
T ss_dssp             CCCS-CEEEEEECSSSEEEEEECHHHHTSCCEEEEEETTTTEEEEEEEC-----------------------------C-
T ss_pred             ccee-EeeEEEEcCCCcEEEEcCCCCcCCCCeEEEEECCCCeEEEEEEC-----------------------------C-
Confidence            3445 6899999999987666544     67899999875432111100                             0 


Q ss_pred             cCcccccccccCCeEEEEEecCCCcEEEEEc---CCCeEEEEEcCCCCcceEEEeecc----------------------
Q 021657           81 VGPRGIYNGHEDTVEDVTFCPSSAQEFCSVG---DDSCLILWDARVGTSPVIKVEKAH----------------------  135 (309)
Q Consensus        81 ~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~---~dg~i~iwd~~~~~~~~~~~~~~~----------------------  135 (309)
                          .....+...+..++++++++..+++..   .++.|.+||+.+++  ....+..|                      
T Consensus       113 ----~~~~~~~~~~~~v~vd~~~g~~yvtd~~~~~~~~i~v~d~~~g~--~~r~~~~~~~~~~~~~~~~~~g~~~~~~~~  186 (343)
T 2qe8_A          113 ----PPITLSNSFVNDLAVDLIHNFVYISDPAPDDKAALIRVDLQTGL--AARVLQGYPGIAPEDIDLVIDGVPVQIGQP  186 (343)
T ss_dssp             ----TTTSCTTCCCCEEEEETTTTEEEEEECCSGGGCEEEEEETTTCC--EEEECTTCTTTSCCSCCCEETTEECBEECT
T ss_pred             ----hhhcccccccceEEEecCCCEEEEEcCccCCCCeEEEEECCCCC--EEEEecCCCcccccccceeECCEEEEeccC
Confidence                000113345688999986546666665   67899999998766  33333221                      


Q ss_pred             -------CCceeEEEeccCCCCeEEEEcCCC-cEEEEecCCCCCCCC--CCcee--eeccCCCCeeEEEEecCCCcEEEE
Q 021657          136 -------DADLHCVDWNPLDDNLILTGSADN-SVRMFDRRNLTSNGV--GSPIN--KFEGHSAAVLCVQWSPDKSSVFGS  203 (309)
Q Consensus       136 -------~~~v~~~~~~~~~~~~l~~~~~dg-~i~i~d~~~~~~~~~--~~~~~--~~~~~~~~v~~~~~~~~~~~l~~~  203 (309)
                             ...+..|+|+| +++.|+.+..++ .+..++.........  .+...  ...++......++++++|. ++++
T Consensus       187 ~g~~~~~~~~~~gia~s~-dg~~ly~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~g~~g~pdgia~d~~G~-l~va  264 (343)
T 2qe8_A          187 DGTVIRPHLGVNGIVLDA-ENEWLYLSPMHSTSMYRIKSADLSNLQLTDAELGSKIERYSEKPICDGISIDKDHN-IYVG  264 (343)
T ss_dssp             TSCEECCCCCEEEEEECT-TSCEEEEEESSCSEEEEEEHHHHTCTTCCHHHHHTTCEEEEECCSCSCEEECTTCC-EEEE
T ss_pred             CCceeceecccceeEecc-CCCEEEEEeCCCCeEEEEEHHHhcCCCCChhhhhcceEecccCCCCceEEECCCCC-EEEE
Confidence                   12357899999 888888776665 555555321000000  00001  1112334567799999987 6778


Q ss_pred             ecCCCcEEEEeCCcccccccCCCCCcCCCCceeeeecCCCcceeeEEEccCCCeEEE
Q 021657          204 SAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKVVDFHWNASDPWTVV  260 (309)
Q Consensus       204 ~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~  260 (309)
                      ...++.|.+||... ++.            ..+.. ..+.....++++.+++..+++
T Consensus       265 ~~~~~~V~~~d~~~-G~~------------~~~~~-~~~~~~p~~va~~~~g~l~v~  307 (343)
T 2qe8_A          265 DLAHSAIGVITSAD-RAY------------KLLVT-DEKLSWTDSFNFGSDGYLYFD  307 (343)
T ss_dssp             EGGGTEEEEEETTT-TEE------------EEEEE-CGGGSCEEEEEECTTSCEEEE
T ss_pred             ccCCCeEEEEECCC-CCE------------EEEEE-CCceecCCeeEECCCCcEEEE
Confidence            88899999999833 111            11111 112456889999997664443

>2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens}

Probab=99.19  E-value=2.3e-12  Score=103.94  Aligned_cols=140  Identities=13%  Similarity=0.092  Sum_probs=69.6

Q ss_pred             CCCEEEEecCCCcEEEEeCCccccccccCCccccccCCCCceeecCCCCCCCCcccCCCCCcCcccccccccCCeEEEEE
Q 021657           20 TEPYVLSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTF   99 (309)
Q Consensus        20 ~~~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~   99 (309)
                      ++..+++++.||.|+.||.+++......                                        ..  +.+.+..+
T Consensus         8 ~~~~v~~gs~dg~v~a~d~~tG~~~W~~----------------------------------------~~--~~~~s~p~   45 (369)
T 2hz6_A            8 PETLLFVSTLDGSLHAVSKRTGSIKWTL----------------------------------------KE--DPVLQVPT   45 (369)
T ss_dssp             CTTEEEEEETTSEEEEEETTTCCEEEEE----------------------------------------EC--CCSCCCC-
T ss_pred             eCCEEEEEcCCCEEEEEECCCCCEEEEe----------------------------------------cC--CCceecce
Confidence            5788999999999999999865333221                                        11  12222233


Q ss_pred             ecCCCcEEEEEcCCCeEEEEEcCCCCcceEEEeeccCC-cee-EEEeccCCCCeEEEEcCCCcEEEEecCCCCCCCCCCc
Q 021657          100 CPSSAQEFCSVGDDSCLILWDARVGTSPVIKVEKAHDA-DLH-CVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSP  177 (309)
Q Consensus       100 ~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~-~v~-~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~  177 (309)
                      ..++ .++++++.||.|+.||..+++.  ......+.. .+. +..+.  .+..+++++.++.++.||.++      ++.
T Consensus        46 ~~~g-~~~v~~s~dg~l~a~d~~tG~~--~w~~~~~~~~~~~~sp~~~--~~~~v~~g~~dg~v~a~D~~t------G~~  114 (369)
T 2hz6_A           46 HVEE-PAFLPDPNDGSLYTLGSKNNEG--LTKLPFTIPELVQASPCRS--SDGILYMGKKQDIWYVIDLLT------GEK  114 (369)
T ss_dssp             -----CCEEECTTTCCEEEC-----CC--SEECSCCHHHHHTTCSCC-------CCCCEEEEEEEEECCC----------
T ss_pred             EcCC-CEEEEeCCCCEEEEEECCCCce--eeeeeccCccccccCceEe--cCCEEEEEeCCCEEEEEECCC------CcE
Confidence            3455 5777888999999999988773  222221111 111 11111  345677788899999999999      888


Q ss_pred             eeeeccCCCCeeEEEEecCCCcEEEEecCCCcEEEEeCCc
Q 021657          178 INKFEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEK  217 (309)
Q Consensus       178 ~~~~~~~~~~v~~~~~~~~~~~l~~~~~~dg~i~iwd~~~  217 (309)
                      +.++..+.    ...++|++..+ ++++.|+.|+.||.++
T Consensus       115 ~w~~~~~~----~~~~~p~~~~v-~~~~~dg~v~a~d~~t  149 (369)
T 2hz6_A          115 QQTLSSAF----ADSLSPSTSLL-YLGRTEYTITMYDTKT  149 (369)
T ss_dssp             ----------------------E-EEEEEEEEEECCCSSS
T ss_pred             EEEecCCC----cccccccCCEE-EEEecCCEEEEEECCC
Confidence            87776543    23456677754 5788899999999987

>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}

Probab=99.18  E-value=5.5e-09  Score=85.36  Aligned_cols=157  Identities=10%  Similarity=0.018  Sum_probs=106.9

Q ss_pred             CCeEEEEEecCCCcEEEEEcCCCeEEEEEcCCCCcceEEEeeccCCceeEEEeccCCCCeEEEEcCCC--cEEEEecCCC
Q 021657           92 DTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADN--SVRMFDRRNL  169 (309)
Q Consensus        92 ~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg--~i~i~d~~~~  169 (309)
                      .....|+|++++ .++++...++.|++||..++.  ....... ..... ++|+| +++.|+++..++  .|.++|... 
T Consensus       131 ~~P~~la~d~~g-~lyv~d~~~~~I~~id~~~g~--~~~~~~~-~~~~~-ia~~~-~g~~l~~~d~~~~~~I~~~d~~~-  203 (409)
T 3hrp_A          131 KYMWGIAAVGNN-TVLAYQRDDPRVRLISVDDNK--VTTVHPG-FKGGK-PAVTK-DKQRVYSIGWEGTHTVYVYMKAS-  203 (409)
T ss_dssp             CCEEEEEECSTT-EEEEEETTTTEEEEEETTTTE--EEEEEET-CCBCB-CEECT-TSSEEEEEBSSTTCEEEEEEGGG-
T ss_pred             CCceEEEEeCCC-CEEEEecCCCcEEEEECCCCE--EEEeecc-CCCCc-eeEec-CCCcEEEEecCCCceEEEEEcCC-
Confidence            357899999998 788888888999999997766  3333333 33344 99999 888888888766  788888876 


Q ss_pred             CCCCCCCceeee----ccCCCCeeEEEEecCCCcEEEEecCCCcEEEEeCCcccccccCCCCCcCCCCceeee--ecCCC
Q 021657          170 TSNGVGSPINKF----EGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQ--HAGHR  243 (309)
Q Consensus       170 ~~~~~~~~~~~~----~~~~~~v~~~~~~~~~~~l~~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~  243 (309)
                           ......+    ......+.+++++|++..|++ +..++.|+.||.......             .+..  ..++.
T Consensus       204 -----~~~~~~~g~~~~~~~~~p~~iav~p~~g~lyv-~d~~~~I~~~d~~~~~~~-------------~~~~~~~~g~~  264 (409)
T 3hrp_A          204 -----GWAPTRIGQLGSTFSGKIGAVALDETEEWLYF-VDSNKNFGRFNVKTQEVT-------------LIKQLELSGSL  264 (409)
T ss_dssp             -----TTCEEEEEECCTTSCSCCCBCEECTTSSEEEE-ECTTCEEEEEETTTCCEE-------------EEEECCCCSCC
T ss_pred             -----CceeEEeeeccchhcCCcEEEEEeCCCCeEEE-EECCCcEEEEECCCCCEE-------------EEecccccCCC
Confidence                 3333333    213456788999996555665 666889999998752111             0100  11111


Q ss_pred             cc--eeeEEEccCCCeEEEEecCCCCCCCCCCeEEEEEcc
Q 021657          244 DK--VVDFHWNASDPWTVVSVSDDCDSTGGGGTLQIWRMS  281 (309)
Q Consensus       244 ~~--v~~~~~~~~~~~~~~s~s~d~~s~~~dg~v~vw~~~  281 (309)
                      ..  ...++|+|++..++++-..+       +.|+.|+..
T Consensus       265 ~~~P~~~ia~~p~~g~lyv~d~~~-------~~I~~~~~~  297 (409)
T 3hrp_A          265 GTNPGPYLIYYFVDSNFYMSDQNL-------SSVYKITPD  297 (409)
T ss_dssp             CCSSCCEEEEETTTTEEEEEETTT-------TEEEEECTT
T ss_pred             CCCccccEEEeCCCCEEEEEeCCC-------CEEEEEecC
Confidence            11  23899999877888766555       889999876

>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A

Probab=99.17  E-value=1.4e-08  Score=76.07  Aligned_cols=191  Identities=12%  Similarity=0.086  Sum_probs=118.3

Q ss_pred             eEEEEECCCCCEEEEecCCC--cEEEEeCCccccccccCCccccccCCCCceeecCCCCCCCCcccCCCCCcCccccccc
Q 021657           12 EFALAMCPTEPYVLSGGKDK--SVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNG   89 (309)
Q Consensus        12 V~~~~~~~~~~~l~t~~~dg--~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   89 (309)
                      ...|.|+ ++.++.+.+.+|  .|+++|++++....                                        .+.-
T Consensus        45 tqGL~~~-~~~LyestG~~g~S~v~~vD~~Tgkv~~----------------------------------------~~~l   83 (262)
T 3nol_A           45 TEGFFYR-NGYFYESTGLNGRSSIRKVDIESGKTLQ----------------------------------------QIEL   83 (262)
T ss_dssp             EEEEEEE-TTEEEEEEEETTEEEEEEECTTTCCEEE----------------------------------------EEEC
T ss_pred             cceEEEE-CCEEEEECCCCCCceEEEEECCCCcEEE----------------------------------------EEec
Confidence            5788998 676777777776  89999998653221                                        1111


Q ss_pred             ccCCe--EEEEEecCCCcEEEEEcCCCeEEEEEcCCCCcceEEEeeccCCceeEEEeccCCCCeEEEEcCCCcEEEEecC
Q 021657           90 HEDTV--EDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRR  167 (309)
Q Consensus        90 ~~~~v--~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~  167 (309)
                      . ...  ..+..  ++..+++..-.++.+.+||..+.+  ....+.... .-..++  + ++..|+.+..++.|.++|..
T Consensus        84 ~-~~~FgeGit~--~g~~ly~ltw~~~~v~v~D~~t~~--~~~ti~~~~-eG~glt--~-dg~~L~~SdGs~~i~~iDp~  154 (262)
T 3nol_A           84 G-KRYFGEGISD--WKDKIVGLTWKNGLGFVWNIRNLR--QVRSFNYDG-EGWGLT--H-NDQYLIMSDGTPVLRFLDPE  154 (262)
T ss_dssp             C-TTCCEEEEEE--ETTEEEEEESSSSEEEEEETTTCC--EEEEEECSS-CCCCEE--E-CSSCEEECCSSSEEEEECTT
T ss_pred             C-CccceeEEEE--eCCEEEEEEeeCCEEEEEECccCc--EEEEEECCC-CceEEe--c-CCCEEEEECCCCeEEEEcCC
Confidence            1 122  23444  343666666678999999999888  555554422 223444  4 56767776668889999999


Q ss_pred             CCCCCCCCCceeeeccCC-----CCeeEEEEecCCCcEEEEecCCCcEEEEeCCcccccccCCCCCcCCCCceeeeecCC
Q 021657          168 NLTSNGVGSPINKFEGHS-----AAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGH  242 (309)
Q Consensus       168 ~~~~~~~~~~~~~~~~~~-----~~v~~~~~~~~~~~l~~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~  242 (309)
                      +      .+.+.++....     ..++.+.|. +|+ +++..-.++.|.+.|.++ ++.........-.+  ........
T Consensus       155 T------~~v~~~I~V~~~g~~~~~lNELe~~-~G~-lyan~w~~~~I~vIDp~t-G~V~~~Id~~~L~~--~~~~~~~~  223 (262)
T 3nol_A          155 S------LTPVRTITVTAHGEELPELNELEWV-DGE-IFANVWQTNKIVRIDPET-GKVTGIIDLNGILA--EAGPLPSP  223 (262)
T ss_dssp             T------CSEEEEEECEETTEECCCEEEEEEE-TTE-EEEEETTSSEEEEECTTT-CBEEEEEECTTGGG--GSCSCCSS
T ss_pred             C------CeEEEEEEeccCCccccccceeEEE-CCE-EEEEEccCCeEEEEECCC-CcEEEEEECCcCcc--ccccccCc
Confidence            8      77777765421     335567776 665 787777788999999887 33221110000000  00000111


Q ss_pred             CcceeeEEEccCCCeEEEEec
Q 021657          243 RDKVVDFHWNASDPWTVVSVS  263 (309)
Q Consensus       243 ~~~v~~~~~~~~~~~~~~s~s  263 (309)
                      ..-.+.|+|+|++..+++++-
T Consensus       224 ~~vlNGIA~dp~~~~lfVTGK  244 (262)
T 3nol_A          224 IDVLNGIAWDKEHHRLFVTGK  244 (262)
T ss_dssp             CCCEEEEEEETTTTEEEEEET
T ss_pred             CCceEEEEEcCCCCEEEEECC
Confidence            235689999999999988664

>2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii}

Probab=99.14  E-value=1.4e-08  Score=81.90  Aligned_cols=169  Identities=16%  Similarity=0.182  Sum_probs=110.5

Q ss_pred             CeEEEEEecCCCcEEEEEcCC------CeEEEEEcCCCCcceEEEeeccC---CceeEEEeccCCCCeEEEEc-------
Q 021657           93 TVEDVTFCPSSAQEFCSVGDD------SCLILWDARVGTSPVIKVEKAHD---ADLHCVDWNPLDDNLILTGS-------  156 (309)
Q Consensus        93 ~v~~~~~~~~~~~~l~s~~~d------g~i~iwd~~~~~~~~~~~~~~~~---~~v~~~~~~~~~~~~l~~~~-------  156 (309)
                      .-..+...|+|  +++++..+      |.|.+.|..+.+  .+.......   .--+.+.|+| +++.+++..       
T Consensus       139 ~Ph~~~~~pdG--i~Vs~~g~~~g~~~g~v~vlD~~T~~--v~~~~~~~~~~~~~~Yd~~~~p-~~~~mvsS~wg~p~~~  213 (462)
T 2ece_A          139 RLHTVHCGPDA--IYISALGNEEGEGPGGILMLDHYSFE--PLGKWEIDRGDQYLAYDFWWNL-PNEVLVSSEWAVPNTI  213 (462)
T ss_dssp             EEEEEEECSSC--EEEEEEEETTSCSCCEEEEECTTTCC--EEEECCSBCTTCCCCCCEEEET-TTTEEEECBCCCHHHH
T ss_pred             cccceeECCCe--EEEEcCCCcCCCCCCeEEEEECCCCe--EEEEEccCCCCccccceEEECC-CCCEEEEccCcCcccc
Confidence            34567788987  55565555      789999999888  566554222   2244688899 888888874       


Q ss_pred             ------------CCCcEEEEecCCCCCCCCCCceeeeccCC--CCeeEEEE--ecCCCcEEEEec-----CCCcEEEEeC
Q 021657          157 ------------ADNSVRMFDRRNLTSNGVGSPINKFEGHS--AAVLCVQW--SPDKSSVFGSSA-----EDGLLNIWDY  215 (309)
Q Consensus       157 ------------~dg~i~i~d~~~~~~~~~~~~~~~~~~~~--~~v~~~~~--~~~~~~l~~~~~-----~dg~i~iwd~  215 (309)
                                  .+.+|.+||+.+      ++.+.++....  .....|.|  +|+++++++++-     .++.|.+|..
T Consensus       214 ~~g~~~~~~~~~~~d~V~v~D~~~------~k~~~tI~vg~~g~~P~~i~f~~~Pdg~~aYV~~e~~~~~Lss~V~v~~~  287 (462)
T 2ece_A          214 EDGLKLEHLKDRYGNRIHFWDLRK------RKRIHSLTLGEENRMALELRPLHDPTKLMGFINMVVSLKDLSSSIWLWFY  287 (462)
T ss_dssp             TTCCCTTTHHHHSCCEEEEEETTT------TEEEEEEESCTTEEEEEEEEECSSTTCCEEEEEEEEETTTCCEEEEEEEE
T ss_pred             ccccchhhhhhccCCEEEEEECCC------CcEeeEEecCCCCCccceeEeeECCCCCEEEEEEeeeccCCCceEEEEEe
Confidence                        368999999998      77777776531  23445655  999999887776     7888988776


Q ss_pred             CcccccccCCCCCcCCCCce----e----eeecCCCcceeeEEEccCCCeEEEEecCCCCCCCCCCeEEEEEccc
Q 021657          216 EKVGKKVEQGPRTTNYPAGL----F----FQHAGHRDKVVDFHWNASDPWTVVSVSDDCDSTGGGGTLQIWRMSD  282 (309)
Q Consensus       216 ~~~~~~~~~~~~~~~~~~~~----~----~~~~~~~~~v~~~~~~~~~~~~~~s~s~d~~s~~~dg~v~vw~~~~  282 (309)
                      .. +.......-  ..+...    +    ..+.+-......+.++|++.+|+++.-..       +.|.+||+.+
T Consensus       288 d~-g~~~~~~vI--di~~~~v~~~lp~~~~~f~~~~~~pa~I~lS~DGrfLYVSnrg~-------d~VavfdV~d  352 (462)
T 2ece_A          288 ED-GKWNAEKVI--EIPAEPLEGNLPEILKPFKAVPPLVTDIDISLDDKFLYLSLWGI-------GEVRQYDISN  352 (462)
T ss_dssp             ET-TEEEEEEEE--EECCEECCSSCCGGGGGGTEECCCCCCEEECTTSCEEEEEETTT-------TEEEEEECSS
T ss_pred             cC-CceeEEEEE--eCCCccccccccccccccccCCCceeEEEECCCCCEEEEEeCCC-------CEEEEEEecC
Confidence            53 221000000  000000    0    00000123578999999999999876554       8999999963

>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1

Probab=99.11  E-value=2.1e-07  Score=71.41  Aligned_cols=160  Identities=5%  Similarity=-0.000  Sum_probs=106.5

Q ss_pred             CCeEEEEEecCCCcEEEEEcCCCeEEEEEcCCCCcceEEEeeccCCceeEEEeccCCCCeEEEEcCCCcEEEEecCCCCC
Q 021657           92 DTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTS  171 (309)
Q Consensus        92 ~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~  171 (309)
                      ..+..++|+++++.++++-..++.|..+++....  ..............++++|..+.++++-...+.|.++++..   
T Consensus        36 ~~~~gi~~d~~~~~ly~~d~~~~~I~~~~~~g~~--~~~~~~~~~~~p~~ia~d~~~~~lyv~d~~~~~I~~~~~~g---  110 (267)
T 1npe_A           36 KVIIGLAFDCVDKVVYWTDISEPSIGRASLHGGE--PTTIIRQDLGSPEGIALDHLGRTIFWTDSQLDRIEVAKMDG---  110 (267)
T ss_dssp             EEEEEEEEETTTTEEEEEETTTTEEEEEESSSCC--CEEEECTTCCCEEEEEEETTTTEEEEEETTTTEEEEEETTS---
T ss_pred             CcEEEEEEecCCCEEEEEECCCCEEEEEecCCCC--cEEEEECCCCCccEEEEEecCCeEEEEECCCCEEEEEEcCC---
Confidence            4578999999765777777788999999987654  23333233356789999983345556666678999999874   


Q ss_pred             CCCCCceeeeccCCCCeeEEEEecCCCcEEEEecC--CCcEEEEeCCcccccccCCCCCcCCCCceeeeecCCCcceeeE
Q 021657          172 NGVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAE--DGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKVVDF  249 (309)
Q Consensus       172 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~--dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~  249 (309)
                         ................++++|++.+++++...  .+.|..+++.....             ..+.  .........+
T Consensus       111 ---~~~~~~~~~~~~~P~~i~vd~~~g~lyv~~~~~~~~~I~~~~~dg~~~-------------~~~~--~~~~~~P~gi  172 (267)
T 1npe_A          111 ---TQRRVLFDTGLVNPRGIVTDPVRGNLYWTDWNRDNPKIETSHMDGTNR-------------RILA--QDNLGLPNGL  172 (267)
T ss_dssp             ---CSCEEEECSSCSSEEEEEEETTTTEEEEEECCSSSCEEEEEETTSCCC-------------EEEE--CTTCSCEEEE
T ss_pred             ---CCEEEEEECCCCCccEEEEeeCCCEEEEEECCCCCcEEEEEecCCCCc-------------EEEE--ECCCCCCcEE
Confidence               22211222222467899999977767766544  46888888764111             1111  1122356899


Q ss_pred             EEccCCCeEEEEecCCCCCCCCCCeEEEEEcc
Q 021657          250 HWNASDPWTVVSVSDDCDSTGGGGTLQIWRMS  281 (309)
Q Consensus       250 ~~~~~~~~~~~s~s~d~~s~~~dg~v~vw~~~  281 (309)
                      +++|++.+++++-...       +.|.++++.
T Consensus       173 a~d~~~~~lyv~d~~~-------~~I~~~~~~  197 (267)
T 1npe_A          173 TFDAFSSQLCWVDAGT-------HRAECLNPA  197 (267)
T ss_dssp             EEETTTTEEEEEETTT-------TEEEEEETT
T ss_pred             EEcCCCCEEEEEECCC-------CEEEEEecC
Confidence            9999888888766554       799999987

>1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1

Probab=99.11  E-value=6e-10  Score=89.03  Aligned_cols=247  Identities=9%  Similarity=-0.035  Sum_probs=137.2

Q ss_pred             EEEECCCCCEEEEec----------CCCcEEEEeCCccccccccCC-----------ccccccCCCCceeecCCCCCCCC
Q 021657           14 ALAMCPTEPYVLSGG----------KDKSVVLWSIQDHITSSATDP-----------ATAKSAGSSGSIIKQSPKPGDGN   72 (309)
Q Consensus        14 ~~~~~~~~~~l~t~~----------~dg~i~vwd~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~   72 (309)
                      .+.++||+++++.+.          .++.|.+||+.+.........           ......+......+.........
T Consensus        69 ~i~~spDg~~lyVan~~~~r~~~G~~~~~VsviD~~T~~vv~~I~v~~~~~~~~g~~P~~ia~SpDGk~lyVan~~~~~~  148 (368)
T 1mda_H           69 LAVAGHSGSDFALASTSFARSAKGKRTDYVEVFDPVTFLPIADIELPDAPRFSVGPRVHIIGNCASSACLLFFLFGSSAA  148 (368)
T ss_dssp             EEEECTTSSCEEEEEEEETTTTSSSEEEEEEEECTTTCCEEEEEEETTSCSCCBSCCTTSEEECTTSSCEEEEECSSSCE
T ss_pred             ceEECCCCCEEEEEcccccccccCCCCCEEEEEECCCCCEEEEEECCCccccccCCCcceEEEcCCCCEEEEEccCCCCe
Confidence            689999999988775          478999999998744333211           01111111222222211112233


Q ss_pred             ccc--CCCCCcCcccccccccCCeEEEEEecCCCcEEEEEcCCCeEEEEEcCC-----CCcceE--EEeeccCCceeEEE
Q 021657           73 DKA--ADGPSVGPRGIYNGHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARV-----GTSPVI--KVEKAHDADLHCVD  143 (309)
Q Consensus        73 ~~~--~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~-----~~~~~~--~~~~~~~~~v~~~~  143 (309)
                      +.+  +|..+   +..+.- .+.   ....|++...+++.+.||.+.+.|+.+     ++....  ..+.....+.   .
T Consensus       149 v~V~~iD~~t---v~~i~v-~~~---~~~~p~g~~~~~~~~~dg~~~~vd~~~~~~~~~~v~~~~t~~i~vg~~P~---~  218 (368)
T 1mda_H          149 AGLSVPGASD---DQLTKS-ASC---FHIHPGAAATHYLGSCPASLAASDLAAAPAAAGIVGAQCTGAQNCSSQAA---Q  218 (368)
T ss_dssp             EEEEETTTEE---EEEEEC-SSC---CCCEEEETTEEECCCCTTSCEEEECCSSCCCCEECCCCSCTTSCBCSCCE---E
T ss_pred             EEEEEEchhh---ceEEEC-CCc---eEEccCCCeEEEEEcCCCCEEEEECccccccCCeEEEEeeeeeeCCCCcc---c
Confidence            444  55554   222211 111   223466656777788899998888876     221000  0011122333   3


Q ss_pred             eccCCCCeEEEEcCCCcEEEEecCCCCCCCCCCceeeeccC----------CCCeeEEEEecCCCcEEEEec---C----
Q 021657          144 WNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGH----------SAAVLCVQWSPDKSSVFGSSA---E----  206 (309)
Q Consensus       144 ~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~----------~~~v~~~~~~~~~~~l~~~~~---~----  206 (309)
                       .+ ++..++..+. +.+.+.|.....    .+.+..+...          ......++++|++++++++..   .    
T Consensus       219 -~~-~~~~~~~vs~-~~V~viD~~~~~----~~v~~~~~~~~~~~~~~~~~p~g~~~v~~s~dg~~lyV~~~~~~~~~~~  291 (368)
T 1mda_H          219 -AN-YPGMLVWAVA-SSILQGDIPAAG----ATMKAAIDGNESGRKADNFRSAGFQMVAKLKNTDGIMILTVEHSRSCLA  291 (368)
T ss_dssp             -ET-TTTEEEECBS-SCCEEEECCSSC----CEEECCCCSSCTHHHHTTEEECSSSCEEEETTTTEEEEEEEECSSCTTS
T ss_pred             -cc-cCCEEEEEcC-CEEEEEECCCCc----ceEEEEEEeccccccccccccCcceeeEEcCCCCEEEEEeccccCcccc
Confidence             55 4555555555 899999986521    1222222110          111223789999998876543   2    


Q ss_pred             -CCcEEEEeCCcccccccCCCCCcCCCCceeeeecCCCcceeeEEEccCCCeEEEEec-CCCCCCCCCCeEEEEEccccc
Q 021657          207 -DGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKVVDFHWNASDPWTVVSVS-DDCDSTGGGGTLQIWRMSDLI  284 (309)
Q Consensus       207 -dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~s-~d~~s~~~dg~v~vw~~~~~~  284 (309)
                       ++.+.++|+.+.               +.+..+... .....++|+|++.+++++.. .+       +.|.++|+.   
T Consensus       292 ~~~~~~ViD~~t~---------------~vv~~i~vg-~~p~gi~~s~Dg~~l~va~~~~~-------~~VsVID~~---  345 (368)
T 1mda_H          292 AAENTSSVTASVG---------------QTSGPISNG-HDSDAIIAAQDGASDNYANSAGT-------EVLDIYDAA---  345 (368)
T ss_dssp             CEEEEEEEESSSC---------------CEEECCEEE-EEECEEEECCSSSCEEEEEETTT-------TEEEEEESS---
T ss_pred             cCCCEEEEECCCC---------------eEEEEEECC-CCcceEEECCCCCEEEEEccCCC-------CeEEEEECC---
Confidence             235669999882               223333222 25799999999987777655 34       899999999   


Q ss_pred             cCChhhHhHhhhcccceEEEeee
Q 021657          285 YRPQDEVLAELEKFKAHVISCTS  307 (309)
Q Consensus       285 ~~~~~~~~~~~~~h~~~v~~~~~  307 (309)
                         +.+.+++++... ..+.+++
T Consensus       346 ---t~kvv~~I~vg~-~P~~i~~  364 (368)
T 1mda_H          346 ---SDQDQSSVELDK-GPESLSV  364 (368)
T ss_dssp             ---SCEEEEECCCCS-CCCEEEC
T ss_pred             ---CCcEEEEEECCC-CCCEEEe
Confidence               677777776433 2334444

>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}

Probab=99.10  E-value=7.1e-08  Score=72.23  Aligned_cols=189  Identities=6%  Similarity=-0.011  Sum_probs=119.6

Q ss_pred             eEEEEECCCCCEEEEecCCCcEEEEeCCccccccccCCccccccCCCCceeecCCCCCCCCcccCCCCCcCccccccccc
Q 021657           12 EFALAMCPTEPYVLSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHE   91 (309)
Q Consensus        12 V~~~~~~~~~~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   91 (309)
                      ...|.|+ ++.++.+.+.+|.|+++|++++...                                        ..+....
T Consensus        57 tqGL~~~-~~~Ly~stG~~g~v~~iD~~Tgkv~----------------------------------------~~~l~~~   95 (268)
T 3nok_A           57 TQGLVFH-QGHFFESTGHQGTLRQLSLESAQPV----------------------------------------WMERLGN   95 (268)
T ss_dssp             EEEEEEE-TTEEEEEETTTTEEEECCSSCSSCS----------------------------------------EEEECTT
T ss_pred             cceEEEE-CCEEEEEcCCCCEEEEEECCCCcEE----------------------------------------eEECCCC
Confidence            5688887 4667778888999999999865322                                        1110001


Q ss_pred             CCeEEEEEecCCCcEEEEEcCCCeEEEEEcCCCCcceEEEeeccCCceeEEEeccCCCCeEEEEcCCCcEEEEecCCCCC
Q 021657           92 DTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTS  171 (309)
Q Consensus        92 ~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~  171 (309)
                      .--..+.+  ++..+++..-.++.+.+||..+.+  .+..+... ..-..++  + ++..|+.+..++.|.++|..+   
T Consensus        96 ~FgeGit~--~g~~Ly~ltw~~~~v~V~D~~Tl~--~~~ti~~~-~eGwGLt--~-Dg~~L~vSdGs~~l~~iDp~T---  164 (268)
T 3nok_A           96 IFAEGLAS--DGERLYQLTWTEGLLFTWSGMPPQ--RERTTRYS-GEGWGLC--Y-WNGKLVRSDGGTMLTFHEPDG---  164 (268)
T ss_dssp             CCEEEEEE--CSSCEEEEESSSCEEEEEETTTTE--EEEEEECS-SCCCCEE--E-ETTEEEEECSSSEEEEECTTT---
T ss_pred             cceeEEEE--eCCEEEEEEccCCEEEEEECCcCc--EEEEEeCC-CceeEEe--c-CCCEEEEECCCCEEEEEcCCC---
Confidence            11123444  444666677789999999999888  55555442 2234555  4 567777777799999999998   


Q ss_pred             CCCCCceeeeccCC-----CCeeEEEEecCCCcEEEEecCCCcEEEEeCCcccccccCCCCCcCCCCceeee----ecCC
Q 021657          172 NGVGSPINKFEGHS-----AAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQ----HAGH  242 (309)
Q Consensus       172 ~~~~~~~~~~~~~~-----~~v~~~~~~~~~~~l~~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~----~~~~  242 (309)
                         .+.+.++....     ..++-+.|. +|+ +++..-.+..|.+.|.++ ++.........     +.-.    ....
T Consensus       165 ---~~v~~~I~V~~~g~~v~~lNeLe~~-dG~-lyanvw~s~~I~vIDp~T-G~V~~~Idl~~-----L~~~~~~~~~~~  233 (268)
T 3nok_A          165 ---FALVGAVQVKLRGQPVELINELECA-NGV-IYANIWHSSDVLEIDPAT-GTVVGVIDASA-----LTRAVAGQVTNP  233 (268)
T ss_dssp             ---CCEEEEEECEETTEECCCEEEEEEE-TTE-EEEEETTCSEEEEECTTT-CBEEEEEECHH-----HHHHHTTTCCCT
T ss_pred             ---CeEEEEEEeCCCCcccccccccEEe-CCE-EEEEECCCCeEEEEeCCC-CcEEEEEECCC-----CcccccccccCc
Confidence               77777765422     245677777 665 787776788999999887 33221100000     0000    0112


Q ss_pred             CcceeeEEEccCCCeEEEEec
Q 021657          243 RDKVVDFHWNASDPWTVVSVS  263 (309)
Q Consensus       243 ~~~v~~~~~~~~~~~~~~s~s  263 (309)
                      ..-.+.|+|+|++..|++++-
T Consensus       234 ~~vlNGIA~dp~~~rlfVTGK  254 (268)
T 3nok_A          234 EAVLNGIAVEPGSGRIFMTGK  254 (268)
T ss_dssp             TCCEEEEEECTTTCCEEEEET
T ss_pred             CCceEEEEEcCCCCEEEEeCC
Confidence            235689999999888888653

>3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A*

Probab=99.09  E-value=3.1e-08  Score=86.75  Aligned_cols=202  Identities=13%  Similarity=0.066  Sum_probs=123.3

Q ss_pred             EEEEECCCCCEEEEecCCCc-------------EEEEeCCccccccccCCccccccCCCCceeecCCCCCCCCcccCCCC
Q 021657           13 FALAMCPTEPYVLSGGKDKS-------------VVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGP   79 (309)
Q Consensus        13 ~~~~~~~~~~~l~t~~~dg~-------------i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   79 (309)
                      ..++|+ |++.|+.++.+..             |++|++.+....                                   
T Consensus       178 ~~~~Ws-Dg~~l~y~~~~~~~~~~~~~~~~~~~v~~~~lgt~~~~-----------------------------------  221 (693)
T 3iuj_A          178 SGISWL-GNEGFFYSSYDKPDGSELSARTDQHKVYFHRLGTAQED-----------------------------------  221 (693)
T ss_dssp             CCCEEE-TTTEEEEEESSCCC-------CCCCEEEEEETTSCGGG-----------------------------------
T ss_pred             ccEEEe-CCCEEEEEEecCcccccccccCCCcEEEEEECCCCccc-----------------------------------
Confidence            467899 9998888877743             888887643110                                   


Q ss_pred             CcCccccccc-ccCCeEEEEEecCCCcEEEEEcC---CCeEEEEEcCCCCcceEEEeeccCCceeEEEeccCCCCeEEEE
Q 021657           80 SVGPRGIYNG-HEDTVEDVTFCPSSAQEFCSVGD---DSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTG  155 (309)
Q Consensus        80 ~~~~~~~~~~-~~~~v~~~~~~~~~~~~l~s~~~---dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~  155 (309)
                       ...+..... |...+..+.|+|+|+.++++.+.   +..|.++|+.++.... ..+..+....... |++.++.+++..
T Consensus       222 -~~~v~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~~~~~~-~~l~~~~~~~~~~-~~~~g~~l~~~t  298 (693)
T 3iuj_A          222 -DRLVFGAIPAQHHRYVGATVTEDDRFLLISAANSTSGNRLYVKDLSQENAPL-LTVQGDLDADVSL-VDNKGSTLYLLT  298 (693)
T ss_dssp             -CEEEESCSGGGCCSEEEEEECTTSCEEEEEEESSSSCCEEEEEETTSTTCCC-EEEECSSSSCEEE-EEEETTEEEEEE
T ss_pred             -ceEEEecCCCCCeEEEEEEEcCCCCEEEEEEccCCCCcEEEEEECCCCCCce-EEEeCCCCceEEE-EeccCCEEEEEE
Confidence             011122223 44457789999999555555443   3589999997764222 3344455555554 556244455555


Q ss_pred             cCC---CcEEEEecCCCCCCCCCCc--eeeeccCCCCeeEEEEecCCCcEEEEecCCC--cEEEEeCCcccccccCCCCC
Q 021657          156 SAD---NSVRMFDRRNLTSNGVGSP--INKFEGHSAAVLCVQWSPDKSSVFGSSAEDG--LLNIWDYEKVGKKVEQGPRT  228 (309)
Q Consensus       156 ~~d---g~i~i~d~~~~~~~~~~~~--~~~~~~~~~~v~~~~~~~~~~~l~~~~~~dg--~i~iwd~~~~~~~~~~~~~~  228 (309)
                      ..+   +.|..+|+.+      +..  ...+..+...+.  .|++++.+|+++...++  .|++||+.. +.        
T Consensus       299 ~~~~~~~~l~~~d~~~------~~~~~~~~l~~~~~~~~--~~s~~g~~lv~~~~~~g~~~l~~~d~~g-~~--------  361 (693)
T 3iuj_A          299 NRDAPNRRLVTVDAAN------PGPAHWRDLIPERQQVL--TVHSGSGYLFAEYMVDATARVEQFDYEG-KR--------  361 (693)
T ss_dssp             CTTCTTCEEEEEETTS------CCGGGCEEEECCCSSCE--EEEEETTEEEEEEEETTEEEEEEECTTS-CE--------
T ss_pred             CCCCCCCEEEEEeCCC------CCccccEEEecCCCCEE--EEEEECCEEEEEEEECCeeEEEEEECCC-Ce--------
Confidence            443   5789999987      332  345555555554  89999998776666666  578888764 11        


Q ss_pred             cCCCCceeeee-cCCCcceeeEEEccCCCeEEEEecCCCCCCCCCCeEEEEEcc
Q 021657          229 TNYPAGLFFQH-AGHRDKVVDFHWNASDPWTVVSVSDDCDSTGGGGTLQIWRMS  281 (309)
Q Consensus       229 ~~~~~~~~~~~-~~~~~~v~~~~~~~~~~~~~~s~s~d~~s~~~dg~v~vw~~~  281 (309)
                             ...+ ......+..+.++|++..++++.+.    -..-+.+..||+.
T Consensus       362 -------~~~l~~p~~~~~~~~~~~~d~~~l~~~~ss----~~tP~~l~~~d~~  404 (693)
T 3iuj_A          362 -------VREVALPGLGSVSGFNGKHDDPALYFGFEN----YAQPPTLYRFEPK  404 (693)
T ss_dssp             -------EEEECCSSSSEEEECCCCTTCSCEEEEEEC----SSSCCEEEEECTT
T ss_pred             -------eEEeecCCCceEEeeecCCCCCEEEEEecC----CCCCCEEEEEECC
Confidence                   1111 1233456777888888877766542    2234678888875

>2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii}

Probab=99.07  E-value=2.8e-08  Score=80.17  Aligned_cols=149  Identities=12%  Similarity=-0.008  Sum_probs=94.8

Q ss_pred             EEEEEecCCCcEEEEEc-------------------CCCeEEEEEcCCCCcceEEEeecc-C-CceeEEEe--ccCCCCe
Q 021657           95 EDVTFCPSSAQEFCSVG-------------------DDSCLILWDARVGTSPVIKVEKAH-D-ADLHCVDW--NPLDDNL  151 (309)
Q Consensus        95 ~~~~~~~~~~~~l~s~~-------------------~dg~i~iwd~~~~~~~~~~~~~~~-~-~~v~~~~~--~~~~~~~  151 (309)
                      ..+.|+|++ +.+++..                   ...+|.+||+.+++  ....+... . .....+.|  +| ++++
T Consensus       191 Yd~~~~p~~-~~mvsS~wg~p~~~~~g~~~~~~~~~~~d~V~v~D~~~~k--~~~tI~vg~~g~~P~~i~f~~~P-dg~~  266 (462)
T 2ece_A          191 YDFWWNLPN-EVLVSSEWAVPNTIEDGLKLEHLKDRYGNRIHFWDLRKRK--RIHSLTLGEENRMALELRPLHDP-TKLM  266 (462)
T ss_dssp             CCEEEETTT-TEEEECBCCCHHHHTTCCCTTTHHHHSCCEEEEEETTTTE--EEEEEESCTTEEEEEEEEECSST-TCCE
T ss_pred             ceEEECCCC-CEEEEccCcCccccccccchhhhhhccCCEEEEEECCCCc--EeeEEecCCCCCccceeEeeECC-CCCE
Confidence            467889998 6677663                   36899999998765  44444432 1 23445555  99 8887


Q ss_pred             EEEEc------CCCcEEEEecCCCCCCCCCCceeee--c----------------cCCCCeeEEEEecCCCcEEEEecCC
Q 021657          152 ILTGS------ADNSVRMFDRRNLTSNGVGSPINKF--E----------------GHSAAVLCVQWSPDKSSVFGSSAED  207 (309)
Q Consensus       152 l~~~~------~dg~i~i~d~~~~~~~~~~~~~~~~--~----------------~~~~~v~~~~~~~~~~~l~~~~~~d  207 (309)
                      ++++.      .+++|.+|......    .+..+.+  .                +.......|.+++||++|+++.-..
T Consensus       267 aYV~~e~~~~~Lss~V~v~~~d~g~----~~~~~vIdi~~~~v~~~lp~~~~~f~~~~~~pa~I~lS~DGrfLYVSnrg~  342 (462)
T 2ece_A          267 GFINMVVSLKDLSSSIWLWFYEDGK----WNAEKVIEIPAEPLEGNLPEILKPFKAVPPLVTDIDISLDDKFLYLSLWGI  342 (462)
T ss_dssp             EEEEEEEETTTCCEEEEEEEEETTE----EEEEEEEEECCEECCSSCCGGGGGGTEECCCCCCEEECTTSCEEEEEETTT
T ss_pred             EEEEEeeeccCCCceEEEEEecCCc----eeEEEEEeCCCccccccccccccccccCCCceeEEEECCCCCEEEEEeCCC
Confidence            77666      56688776654310    1111111  0                0024577899999999999888889


Q ss_pred             CcEEEEeCCcccccccCCCCCcCCCCceeeeecCC--------------CcceeeEEEccCCCeEEEEec
Q 021657          208 GLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGH--------------RDKVVDFHWNASDPWTVVSVS  263 (309)
Q Consensus       208 g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------~~~v~~~~~~~~~~~~~~s~s  263 (309)
                      +.|.+||+...+..            ..+......              ...-..+.++|++.+++++.+
T Consensus       343 d~VavfdV~d~~~~------------~lv~~I~tGG~~~~~~~~~G~~~~ggPr~~~lSpDGk~LyVaNs  400 (462)
T 2ece_A          343 GEVRQYDISNPFKP------------VLTGKVKLGGIFHRADHPAGHKLTGAPQMLEISRDGRRVYVTNS  400 (462)
T ss_dssp             TEEEEEECSSTTSC------------EEEEEEECBTTTTCBCCTTSCCCCSCCCCEEECTTSSEEEEECC
T ss_pred             CEEEEEEecCCCCc------------EEEEEEEeCCeeccccccccccCCCCCCEEEEcCCCCEEEEEcC
Confidence            99999999743221            111111111              113578999999999998763

>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}

Probab=99.05  E-value=3e-07  Score=68.30  Aligned_cols=195  Identities=10%  Similarity=0.008  Sum_probs=118.2

Q ss_pred             ceEEEEECCCCCEEEEecCCC--cEEEEeCCccccccccCCccccccCCCCceeecCCCCCCCCcccCCCCCcCcccccc
Q 021657           11 AEFALAMCPTEPYVLSGGKDK--SVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYN   88 (309)
Q Consensus        11 ~V~~~~~~~~~~~l~t~~~dg--~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   88 (309)
                      -...+.|++ +.++.+.+.+|  .|+++|++++.......                                      +.
T Consensus        22 ftqGL~~~~-~~LyestG~~g~S~v~~vD~~tgkv~~~~~--------------------------------------l~   62 (243)
T 3mbr_X           22 FTEGLFYLR-GHLYESTGETGRSSVRKVDLETGRILQRAE--------------------------------------VP   62 (243)
T ss_dssp             CEEEEEEET-TEEEEEECCTTSCEEEEEETTTCCEEEEEE--------------------------------------CC
T ss_pred             ccccEEEEC-CEEEEECCCCCCceEEEEECCCCCEEEEEe--------------------------------------CC
Confidence            467899986 56666766654  89999998653322111                                      01


Q ss_pred             cccCCeEEEEEecCCCcEEEEEcCCCeEEEEEcCCCCcceEEEeeccCCceeEEEeccCCCCeEEEEcCCCcEEEEecCC
Q 021657           89 GHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRN  168 (309)
Q Consensus        89 ~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~  168 (309)
                      .+ .--..+...  +.+++...-.++.+.+||..+.+  ....+.... .-..++  + ++..|+.+..++.|.++|..+
T Consensus        63 ~~-~fgeGi~~~--~~~ly~ltw~~~~v~v~D~~tl~--~~~ti~~~~-~Gwglt--~-dg~~L~vSdgs~~l~~iDp~t  133 (243)
T 3mbr_X           63 PP-YFGAGIVAW--RDRLIQLTWRNHEGFVYDLATLT--PRARFRYPG-EGWALT--S-DDSHLYMSDGTAVIRKLDPDT  133 (243)
T ss_dssp             TT-CCEEEEEEE--TTEEEEEESSSSEEEEEETTTTE--EEEEEECSS-CCCEEE--E-CSSCEEEECSSSEEEEECTTT
T ss_pred             CC-cceeEEEEe--CCEEEEEEeeCCEEEEEECCcCc--EEEEEeCCC-CceEEe--e-CCCEEEEECCCCeEEEEeCCC
Confidence            11 011233443  33667777789999999998887  555554433 234555  4 566666666789999999998


Q ss_pred             CCCCCCCCceeeeccCC-----CCeeEEEEecCCCcEEEEecCCCcEEEEeCCcccccccCCCCCcCCCCceeeeecCCC
Q 021657          169 LTSNGVGSPINKFEGHS-----AAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHR  243 (309)
Q Consensus       169 ~~~~~~~~~~~~~~~~~-----~~v~~~~~~~~~~~l~~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  243 (309)
                            .+.+.++....     ..++-+.+. +|+ +++..-.+..|.+.|.++ ++.........-.+... .......
T Consensus       134 ------~~~~~~I~V~~~g~~~~~lNeLe~~-~G~-lyanvw~s~~I~vIDp~t-G~V~~~idl~~l~~~~~-~~~~~~~  203 (243)
T 3mbr_X          134 ------LQQVGSIKVTAGGRPLDNLNELEWV-NGE-LLANVWLTSRIARIDPAS-GKVVAWIDLQALVPDAD-ALTDSTN  203 (243)
T ss_dssp             ------CCEEEEEECEETTEECCCEEEEEEE-TTE-EEEEETTTTEEEEECTTT-CBEEEEEECGGGSTTTT-SCCCTTS
T ss_pred             ------CeEEEEEEEccCCcccccceeeEEe-CCE-EEEEECCCCeEEEEECCC-CCEEEEEECCcCccccc-cccCCcC
Confidence                  77777765422     345666765 555 777766778999999887 33222111000000000 0001122


Q ss_pred             cceeeEEEccCCCeEEEEec
Q 021657          244 DKVVDFHWNASDPWTVVSVS  263 (309)
Q Consensus       244 ~~v~~~~~~~~~~~~~~s~s  263 (309)
                      .-.+.|+++|++..+++++-
T Consensus       204 ~vlNGIA~d~~~~~lfVTGK  223 (243)
T 3mbr_X          204 DVLNGIAFDAEHDRLFVTGK  223 (243)
T ss_dssp             SCEEEEEEETTTTEEEEEET
T ss_pred             CceEEEEEcCCCCEEEEECC
Confidence            35689999999999998764

>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}

Probab=99.02  E-value=6.8e-08  Score=78.55  Aligned_cols=118  Identities=14%  Similarity=0.048  Sum_probs=73.7

Q ss_pred             cccccccccCCeEEEEEecCCCcEEEEEc---------CCCeEEEEEcCCCCcceEEEeecc-------CCceeEEEecc
Q 021657           83 PRGIYNGHEDTVEDVTFCPSSAQEFCSVG---------DDSCLILWDARVGTSPVIKVEKAH-------DADLHCVDWNP  146 (309)
Q Consensus        83 ~~~~~~~~~~~v~~~~~~~~~~~~l~s~~---------~dg~i~iwd~~~~~~~~~~~~~~~-------~~~v~~~~~~~  146 (309)
                      .+..+..-..+  .+.++|+++.++++..         .++.|.++|..+.+  ....+.-.       ......+.++|
T Consensus       111 vv~~I~vG~~P--gia~SpDgk~lyVan~~~~~~~~G~~~~~VsviD~~t~~--vv~~I~v~g~~r~~~g~~P~~~~~sp  186 (426)
T 3c75_H          111 ILGMTDGGFLP--HPVAAEDGSFFAQASTVFERIARGKRTDYVEVFDPVTFL--PIADIELPDAPRFLVGTYQWMNALTP  186 (426)
T ss_dssp             EEEEEEECSSC--EEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCC--EEEEEEETTCCCCCBSCCGGGSEECT
T ss_pred             EEEEEECCCCC--ceEECCCCCEEEEEeccccccccCCCCCEEEEEECCCCc--EEEEEECCCccccccCCCcceEEEcC
Confidence            33344333344  7999999955444432         46789999999888  44444321       23457899999


Q ss_pred             CCCCeEEEEcC--CCcEEEEecCCCCCCCCCCceeeeccCCCCeeEEEEecCCCcEEEEecCCCcEEEEeC
Q 021657          147 LDDNLILTGSA--DNSVRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDY  215 (309)
Q Consensus       147 ~~~~~l~~~~~--dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~dg~i~iwd~  215 (309)
                       ++++++++..  ++.|.++|+.+      .+.+.++.....    ....|++...+++.+.||.+.+.+.
T Consensus       187 -DGk~lyV~n~~~~~~VsVID~~t------~kvv~~I~v~g~----~~~~p~g~~~~v~~~~dG~~~~V~~  246 (426)
T 3c75_H          187 -DNKNLLFYQFSPAPAVGVVDLEG------KTFDRMLDVPDC----YHIFPASPTVFYMNCRDGSLARVDF  246 (426)
T ss_dssp             -TSSEEEEEECSSSCEEEEEETTT------TEEEEEEECCSE----EEEEEEETTEEEEEETTSSEEEEEC
T ss_pred             -CCCEEEEEecCCCCeEEEEECCC------CeEEEEEEcCCc----eeeccCCCcEEEEEcCCCCEEEEEC
Confidence             9998888764  57899999999      777777764221    2233333333334444555444444

>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...

Probab=99.00  E-value=8.4e-08  Score=76.72  Aligned_cols=151  Identities=11%  Similarity=0.025  Sum_probs=102.2

Q ss_pred             EEECCCCCEEEEecC-----CCcEEEEeCCccccccccCCccccccCCCCceeecCCCCCCCCcccCCCCCcCccccccc
Q 021657           15 LAMCPTEPYVLSGGK-----DKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNG   89 (309)
Q Consensus        15 ~~~~~~~~~l~t~~~-----dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   89 (309)
                      ....|++..+.....     ++.|.+.|..+.                                        +.+..+..
T Consensus        38 ~~~~pd~~~vyV~~~~~~~~~~~V~ViD~~t~----------------------------------------~v~~~I~v   77 (386)
T 3sjl_D           38 EAPAPDARRVYVNDPAHFAAVTQQFVIDGEAG----------------------------------------RVIGMIDG   77 (386)
T ss_dssp             CCCCCCTTEEEEEECGGGCSSEEEEEEETTTT----------------------------------------EEEEEEEE
T ss_pred             eccCCCCCEEEEEcCcccCCCCEEEEEECCCC----------------------------------------eEEEEEEC
Confidence            455789988776654     678999998743                                        33333433


Q ss_pred             ccCCeEEEEEecCCCcEEEEEc---------CCCeEEEEEcCCCCcceEEEeecc-------CCceeEEEeccCCCCeEE
Q 021657           90 HEDTVEDVTFCPSSAQEFCSVG---------DDSCLILWDARVGTSPVIKVEKAH-------DADLHCVDWNPLDDNLIL  153 (309)
Q Consensus        90 ~~~~v~~~~~~~~~~~~l~s~~---------~dg~i~iwd~~~~~~~~~~~~~~~-------~~~v~~~~~~~~~~~~l~  153 (309)
                      -..+ . +.++|+|+.++++..         .++.|.+||..+.+  ....+.-.       ......++++| ++++++
T Consensus        78 G~~P-~-va~spDG~~lyVan~~~~r~~~G~~~~~VsviD~~t~~--v~~~I~v~~g~r~~~g~~P~~~a~sp-DGk~ly  152 (386)
T 3sjl_D           78 GFLP-N-PVVADDGSFIAHASTVFSRIARGERTDYVEVFDPVTLL--PTADIELPDAPRFLVGTYPWMTSLTP-DGKTLL  152 (386)
T ss_dssp             CSSC-E-EEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCC--EEEEEEETTCCCCCBSCCGGGEEECT-TSSEEE
T ss_pred             CCCC-c-EEECCCCCEEEEEcccccccccCCCCCEEEEEECCCCe--EEEEEECCCccccccCCCCceEEEcC-CCCEEE
Confidence            3344 3 999999954444432         36789999999887  44444321       12467899999 999888


Q ss_pred             EEcC--CCcEEEEecCCCCCCCCCCceeeeccCCCCeeEEEEecCCCcEEEEecCCCcEEEEeCCcccc
Q 021657          154 TGSA--DNSVRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGK  220 (309)
Q Consensus       154 ~~~~--dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~dg~i~iwd~~~~~~  220 (309)
                      ++..  ++.|.++|+.+      .+.+.++....  .  ..+.|.+...+++.+.||.+.+.++...++
T Consensus       153 Van~~~~~~VsVID~~t------~~vv~tI~v~g--~--~~~~P~g~~~~~~~~~DG~~~~v~~~~~g~  211 (386)
T 3sjl_D          153 FYQFSPAPAVGVVDLEG------KAFKRMLDVPD--C--YHIFPTAPDTFFMHCRDGSLAKVAFGTEGT  211 (386)
T ss_dssp             EEECSSSCEEEEEETTT------TEEEEEEECCS--E--EEEEEEETTEEEEEETTSCEEEEECCSSSC
T ss_pred             EEEcCCCCeEEEEECCC------CcEEEEEECCC--c--ceeecCCCceeEEECCCCCEEEEECCCCCe
Confidence            7764  68999999999      88888886422  1  223354443455777789988888876333

>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1

Probab=98.96  E-value=2.2e-08  Score=87.09  Aligned_cols=153  Identities=12%  Similarity=0.049  Sum_probs=90.8

Q ss_pred             CCCEEEEecCCCcEEEEeCCccccccccCCc-c-----cc--ccCCCCceeecCCCC----CCCCcccCCCCCcCccccc
Q 021657           20 TEPYVLSGGKDKSVVLWSIQDHITSSATDPA-T-----AK--SAGSSGSIIKQSPKP----GDGNDKAADGPSVGPRGIY   87 (309)
Q Consensus        20 ~~~~l~t~~~dg~i~vwd~~~~~~~~~~~~~-~-----~~--~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~   87 (309)
                      ++..++.++.|+.|..+|.+++......... .     ..  .+........+....    .++.+..++..+++.+..+
T Consensus       127 ~~~~v~v~~~dg~l~alD~~tG~~~W~~~~~~~~~~~~~~~~~p~v~~~~v~v~~~~~~~~~~g~v~a~D~~tG~~~W~~  206 (677)
T 1kb0_A          127 WKGKVYVGAWDGRLIALDAATGKEVWHQNTFEGQKGSLTITGAPRVFKGKVIIGNGGAEYGVRGYITAYDAETGERKWRW  206 (677)
T ss_dssp             ETTEEEEECTTSEEEEEETTTCCEEEEEETTTTCCSSCBCCSCCEEETTEEEECCBCTTTCCBCEEEEEETTTCCEEEEE
T ss_pred             ECCEEEEEcCCCEEEEEECCCCCEEeeecCCcCcCcCcccccCcEEECCEEEEEecccccCCCCEEEEEECCCCcEEEEe
Confidence            3567888899999999999888554433321 0     00  000011112222111    2466777777777665444


Q ss_pred             cccc--------------------------------CCeEEEEEecCCCcEEEEEcCCC-------------------eE
Q 021657           88 NGHE--------------------------------DTVEDVTFCPSSAQEFCSVGDDS-------------------CL  116 (309)
Q Consensus        88 ~~~~--------------------------------~~v~~~~~~~~~~~~l~s~~~dg-------------------~i  116 (309)
                      ....                                .....+.++|++ .+++.+..++                   .|
T Consensus       207 ~~~~~~~~~~~~~~~~~~g~~~w~~~g~~~~~~~g~~~w~~~~~d~~~-~~vy~~~~~~~~w~~~~~~~~~gd~~~~~sv  285 (677)
T 1kb0_A          207 FSVPGDPSKPFEDESMKRAARTWDPSGKWWEAGGGGTMWDSMTFDAEL-NTMYVGTGNGSPWSHKVRSPKGGDNLYLASI  285 (677)
T ss_dssp             ESSCCCTTSCCSSHHHHHHHTTSCGGGCHHHHCEECCCCSCEEEETTT-TEEEEECCCEESSCHHHHSTTCCCCTTTTEE
T ss_pred             ccCCCCccccccccccccccccccccCceeEeCCCcccccceeEcCCC-CEEEEECCCCccccCCCCCccCCCCeeeEEE
Confidence            3211                                112357888887 5666666554                   59


Q ss_pred             EEEEcCCCCcceEEEeec--cC-------CceeEEEeccCCC---CeEEEEcCCCcEEEEecCCCCCCCCCCceeeec
Q 021657          117 ILWDARVGTSPVIKVEKA--HD-------ADLHCVDWNPLDD---NLILTGSADNSVRMFDRRNLTSNGVGSPINKFE  182 (309)
Q Consensus       117 ~iwd~~~~~~~~~~~~~~--~~-------~~v~~~~~~~~~~---~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~  182 (309)
                      ..+|..+++  ..-.+..  |.       .....+.... ++   ..++.++.+|.++++|.++      ++.+..+.
T Consensus       286 ~AlD~~TG~--~~W~~~~~~~d~wd~~~~~~p~l~~~~~-dG~~~~~l~~~~~~G~l~~lD~~t------G~~l~~~~  354 (677)
T 1kb0_A          286 VALDPDTGK--YKWHYQETPGDNWDYTSTQPMILADIKI-AGKPRKVILHAPKNGFFFVLDRTN------GKFISAKN  354 (677)
T ss_dssp             EEECTTTCC--EEEEEESSTTCCSCCCCCSCCEEEEEEE-TTEEEEEEEECCTTSEEEEEETTT------CCEEEEEE
T ss_pred             EEEECCCCC--EEEEEecCCCcccccccCCCcEEEeccc-CCcEeeEEEEECCCCEEEEEECCC------CCEecccc
Confidence            999999988  3333322  21       1122223333 55   6889999999999999999      77776554

>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}

Probab=98.94  E-value=1.2e-07  Score=82.61  Aligned_cols=149  Identities=10%  Similarity=0.076  Sum_probs=87.7

Q ss_pred             CCEEEEecCCCcEEEEeCCccccccccCCc-c-----cc--ccCCCCceeecCCC----CCCCCcccCCCCCcCcccccc
Q 021657           21 EPYVLSGGKDKSVVLWSIQDHITSSATDPA-T-----AK--SAGSSGSIIKQSPK----PGDGNDKAADGPSVGPRGIYN   88 (309)
Q Consensus        21 ~~~l~t~~~dg~i~vwd~~~~~~~~~~~~~-~-----~~--~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~   88 (309)
                      +..++.++.|+.|..+|.+++......... .     ..  .+........+...    ..++.+..++..+++.+..+.
T Consensus       121 ~g~v~v~~~dg~l~AlDa~TG~~~W~~~~~~~~~~~~~~~~sP~v~~g~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~  200 (689)
T 1yiq_A          121 KGKVYVGVLDGRLEAIDAKTGQRAWSVDTRADHKRSYTITGAPRVVNGKVVIGNGGAEFGVRGYVTAYDAETGKEAWRFY  200 (689)
T ss_dssp             TTEEEEECTTSEEEEEETTTCCEEEEEECCSCTTSCCBCCSCCEEETTEEEECCBCTTTCCBCEEEEEETTTCCEEEEEE
T ss_pred             CCEEEEEccCCEEEEEECCCCCEeeeecCcCCCCCCccccCCcEEECCEEEEEeCCCccCCCCEEEEEECCCCcEEEEec
Confidence            567888999999999999988554433221 0     00  00000111112111    124667777777776654432


Q ss_pred             c-------------------------------ccCCeEEEEEecCCCcEEEEEcCCCe-------------------EEE
Q 021657           89 G-------------------------------HEDTVEDVTFCPSSAQEFCSVGDDSC-------------------LIL  118 (309)
Q Consensus        89 ~-------------------------------~~~~v~~~~~~~~~~~~l~s~~~dg~-------------------i~i  118 (309)
                      .                               +......+.++|++ .+++.+..++.                   |..
T Consensus       201 ~~~~~p~~~~~~~~~~~~~~~~~g~~w~~~~~g~~~w~~~~~d~~~-~~vy~~~~~g~~w~~~~~~~~~gd~~y~~~v~A  279 (689)
T 1yiq_A          201 TVPGDPKLPPEGKGMEIAAKTWFGDAYVEQGGGGTAWDSFAYDPEL-NLLYIGVGNGSLWDPKWRSQAKGDNLFLSSIVA  279 (689)
T ss_dssp             SSCCCTTSCCCSHHHHHHHTTCCSSTHHHHCEECCCCSCEEEETTT-TEEEEECCCEESSCHHHHHTTCSCCTTTTEEEE
T ss_pred             ccCCCcccccccccccccccccCCceeeecCCCCccccceeEcCCC-CEEEEeCCCCCccccCCCCCCCCCceeeeeEEE
Confidence            1                               11111257888877 67777877764                   999


Q ss_pred             EEcCCCCcceEEEeec--cC-------CceeEEEeccCCCC---eEEEEcCCCcEEEEecCCCCCCCCCCcee
Q 021657          119 WDARVGTSPVIKVEKA--HD-------ADLHCVDWNPLDDN---LILTGSADNSVRMFDRRNLTSNGVGSPIN  179 (309)
Q Consensus       119 wd~~~~~~~~~~~~~~--~~-------~~v~~~~~~~~~~~---~l~~~~~dg~i~i~d~~~~~~~~~~~~~~  179 (309)
                      +|..+++  ..-.+..  |.       .++....... ++.   .++.++.+|.++++|.++      ++.+.
T Consensus       280 lD~~TG~--~~W~~~~~~~d~wd~~~~~~~~l~d~~~-~G~~~~~v~~~~~~G~l~~lD~~t------G~~l~  343 (689)
T 1yiq_A          280 VNADTGE--YVWHYQTTPGDAWDYTATQHMILAELPI-DGKPRKVLMQAPKNGFFYVIDRAT------GELLS  343 (689)
T ss_dssp             EETTTCC--EEEEEESSTTCCSCCCCCSCEEEEEEEE-TTEEEEEEEECCTTSEEEEEETTT------CCEEE
T ss_pred             EEccCCc--eeEeeecCCcccccccCCCCcEEEeecc-CCcEEEEEEEECCCCeEEEEECCC------CCEec
Confidence            9999998  3433332  21       1111122222 444   788999999999999998      77663

>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus}

Probab=98.93  E-value=3e-06  Score=67.63  Aligned_cols=116  Identities=5%  Similarity=-0.037  Sum_probs=80.7

Q ss_pred             CeEEEEEecCCCcEEEEEcCCCeEEEEEcCCCCcceEEEeeccCCceeEEEeccCCCCeEEEEcCC-CcEEEEecCCCCC
Q 021657           93 TVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSAD-NSVRMFDRRNLTS  171 (309)
Q Consensus        93 ~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d-g~i~i~d~~~~~~  171 (309)
                      ....+++.+.++.++++-...+.|.+.++....  ..............++++|.++.++++-... +.|..+++..   
T Consensus       117 ~p~glavd~~~g~ly~~d~~~~~I~~~~~dG~~--~~~l~~~~l~~P~~iavdp~~g~ly~td~~~~~~I~r~~~dG---  191 (349)
T 3v64_C          117 SPGGLAVDWVHDKLYWTDSGTSRIEVANLDGAH--RKVLLWQSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMDG---  191 (349)
T ss_dssp             CCCEEEEETTTTEEEEEETTTTEEEEEETTSCS--CEEEECTTCSCEEEEEEETTTTEEEEEECSSSCEEEEEETTS---
T ss_pred             CccEEEEecCCCeEEEEcCCCCeEEEEcCCCCc--eEEEEeCCCCCcceEEEecCcCeEEEeccCCCCEEEEEeCCC---
Confidence            456889988665777787788899999986544  2233333345678999998445555555555 7888888764   


Q ss_pred             CCCCCceeee-ccCCCCeeEEEEecCCCcEEEEecCCCcEEEEeCCc
Q 021657          172 NGVGSPINKF-EGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEK  217 (309)
Q Consensus       172 ~~~~~~~~~~-~~~~~~v~~~~~~~~~~~l~~~~~~dg~i~iwd~~~  217 (309)
                          .....+ ...-...+.|+++|++..|+++-...+.|..+|+..
T Consensus       192 ----~~~~~~~~~~~~~PnGla~d~~~~~lY~aD~~~~~I~~~~~dG  234 (349)
T 3v64_C          192 ----SGRRIIADTHLFWPNGLTIDYAGRRMYWVDAKHHVIERANLDG  234 (349)
T ss_dssp             ----CSCEESCCSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTS
T ss_pred             ----CCcEEEEECCCCCcceEEEeCCCCEEEEEECCCCEEEEEeCCC
Confidence                222233 223345789999998888888878888999999875

>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}

Probab=98.91  E-value=1.5e-06  Score=70.32  Aligned_cols=155  Identities=5%  Similarity=-0.077  Sum_probs=97.8

Q ss_pred             CeEEEEEecCCCcEEEEEcCCCeEEEEEcCCCCcceEEEeeccCCceeEEEeccCCCCeEEEEcCC-CcEEEEecCCCCC
Q 021657           93 TVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSAD-NSVRMFDRRNLTS  171 (309)
Q Consensus        93 ~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d-g~i~i~d~~~~~~  171 (309)
                      ....+++.+.++.++++-...+.|.+.++....  ..............++++|..+.++++-... +.|..+++..   
T Consensus       160 ~p~glavd~~~g~lY~~d~~~~~I~~~~~dg~~--~~~l~~~~l~~P~giavdp~~g~ly~td~~~~~~I~r~~~dG---  234 (386)
T 3v65_B          160 SPGGLAVDWVHDKLYWTDSGTSRIEVANLDGAH--RKVLLWQSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMDG---  234 (386)
T ss_dssp             CCCCEEEETTTTEEEEEETTTTEEEECBTTSCS--CEEEECSSCSCEEEEEEETTTTEEEEEECSSSCEEEEEETTS---
T ss_pred             CccEEEEEeCCCeEEEEcCCCCeEEEEeCCCCc--eEEeecCCCCCCcEEEEEcCCCeEEEeccCCCCEEEEEeCCC---
Confidence            346788887665777777778889998886444  2333333345678999998344455554444 7888888764   


Q ss_pred             CCCCCceeee-ccCCCCeeEEEEecCCCcEEEEecCCCcEEEEeCCcccccccCCCCCcCCCCceeeeecCCCcceeeEE
Q 021657          172 NGVGSPINKF-EGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKVVDFH  250 (309)
Q Consensus       172 ~~~~~~~~~~-~~~~~~v~~~~~~~~~~~l~~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~  250 (309)
                          .....+ ...-...+.|+++|++..|+++-...+.|..+|+......             .+  ..........++
T Consensus       235 ----~~~~~~~~~~~~~PnGlavd~~~~~lY~aD~~~~~I~~~d~dG~~~~-------------~~--~~~~~~~P~gia  295 (386)
T 3v65_B          235 ----SGRRIIADTHLFWPNGLTIDYAGRRMYWVDAKHHVIERANLDGSHRK-------------AV--ISQGLPHPFAIT  295 (386)
T ss_dssp             ----CSCEEEECSSCSCEEEEEEEGGGTEEEEEETTTTEEEEECTTSCSCE-------------EE--ECSSCSSEEEEE
T ss_pred             ----CCcEEEEECCCCCeeeEEEeCCCCEEEEEECCCCEEEEEeCCCCeeE-------------EE--EECCCCCceEEE
Confidence                222233 2234457899999988888888888889999998641111             11  111223456777


Q ss_pred             EccCCCeEEEEecCCCCCCCCCCeEEEEEc
Q 021657          251 WNASDPWTVVSVSDDCDSTGGGGTLQIWRM  280 (309)
Q Consensus       251 ~~~~~~~~~~s~s~d~~s~~~dg~v~vw~~  280 (309)
                      +.  +..++.+-...       +.|..++.
T Consensus       296 v~--~~~ly~td~~~-------~~V~~~~~  316 (386)
T 3v65_B          296 VF--EDSLYWTDWHT-------KSINSANK  316 (386)
T ss_dssp             EE--TTEEEEEETTT-------TEEEEEET
T ss_pred             EE--CCEEEEeeCCC-------CeEEEEEC
Confidence            73  44666654433       67777774

>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3

Probab=98.90  E-value=3e-06  Score=66.39  Aligned_cols=197  Identities=14%  Similarity=0.055  Sum_probs=116.6

Q ss_pred             ceEEEEECCCCCEEEEecCCCcEEEEeCCccccccccCCccccccCCCCceeecCCCCCCCCcccCCCCCcCcccccccc
Q 021657           11 AEFALAMCPTEPYVLSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGH   90 (309)
Q Consensus        11 ~V~~~~~~~~~~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   90 (309)
                      ....++|+++++++++-..++.|..||.+....                                         ..+ ..
T Consensus        33 ~pegia~~~~g~lyv~d~~~~~I~~~d~~g~~~-----------------------------------------~~~-~~   70 (306)
T 2p4o_A           33 FLENLASAPDGTIFVTNHEVGEIVSITPDGNQQ-----------------------------------------IHA-TV   70 (306)
T ss_dssp             CEEEEEECTTSCEEEEETTTTEEEEECTTCCEE-----------------------------------------EEE-EC
T ss_pred             CcceEEECCCCCEEEEeCCCCeEEEECCCCceE-----------------------------------------EEE-eC
Confidence            357899999999888877889999998763210                                         000 11


Q ss_pred             cCCeEEEEEecCCCcEEEEEcC-CC-eEEEEEcCCCCcceEEEeeccCCceeEEEeccCCCCeEEEEcCCCcEEEEecCC
Q 021657           91 EDTVEDVTFCPSSAQEFCSVGD-DS-CLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRN  168 (309)
Q Consensus        91 ~~~v~~~~~~~~~~~~l~s~~~-dg-~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~  168 (309)
                      ......+++.+++ +++++... ++ .|..+|..+++....... ........++..+ ++..+++-..++.|+.+|...
T Consensus        71 ~~~p~gia~~~dG-~l~vad~~~~~~~v~~~d~~~g~~~~~~~~-~~~~~~~g~~~~~-~~~~~v~d~~~g~i~~~d~~~  147 (306)
T 2p4o_A           71 EGKVSGLAFTSNG-DLVATGWNADSIPVVSLVKSDGTVETLLTL-PDAIFLNGITPLS-DTQYLTADSYRGAIWLIDVVQ  147 (306)
T ss_dssp             SSEEEEEEECTTS-CEEEEEECTTSCEEEEEECTTSCEEEEEEC-TTCSCEEEEEESS-SSEEEEEETTTTEEEEEETTT
T ss_pred             CCCceeEEEcCCC-cEEEEeccCCcceEEEEcCCCCeEEEEEeC-CCccccCcccccC-CCcEEEEECCCCeEEEEeCCC
Confidence            2357889999998 55555433 22 477777777662111111 1122334555555 555555555688999999764


Q ss_pred             CCCCCCCC-cee---------eeccCCCCeeEEEEecCCCcEEEEecCCCcEEEEeCCcccccccCCCCCcCCCCceeee
Q 021657          169 LTSNGVGS-PIN---------KFEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQ  238 (309)
Q Consensus       169 ~~~~~~~~-~~~---------~~~~~~~~v~~~~~~~~~~~l~~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~  238 (309)
                            ++ .+.         .....-...+.|  ++++.+++++-...+.|..|++...+...         ....+..
T Consensus       148 ------~~~~v~~~~~~~~~~~~~~~~~~pngi--s~dg~~lyv~d~~~~~I~~~~~~~~g~~~---------~~~~~~~  210 (306)
T 2p4o_A          148 ------PSGSIWLEHPMLARSNSESVFPAANGL--KRFGNFLYVSNTEKMLLLRIPVDSTDKPG---------EPEIFVE  210 (306)
T ss_dssp             ------TEEEEEEECGGGSCSSTTCCSCSEEEE--EEETTEEEEEETTTTEEEEEEBCTTSCBC---------CCEEEEE
T ss_pred             ------CcEeEEEECCccccccccCCCCcCCCc--CcCCCEEEEEeCCCCEEEEEEeCCCCCCC---------ccEEEec
Confidence                  21 111         000111234555  88888888888888999999987522110         0111111


Q ss_pred             ecCCCcceeeEEEccCCCeEEEEecCCCCCCCCCCeEEEEEcc
Q 021657          239 HAGHRDKVVDFHWNASDPWTVVSVSDDCDSTGGGGTLQIWRMS  281 (309)
Q Consensus       239 ~~~~~~~v~~~~~~~~~~~~~~s~s~d~~s~~~dg~v~vw~~~  281 (309)
                      .    .....+++++++.. +++...       .+.|.+++..
T Consensus       211 ~----~~P~gi~vd~dG~l-~va~~~-------~~~V~~~~~~  241 (306)
T 2p4o_A          211 Q----TNIDDFAFDVEGNL-YGATHI-------YNSVVRIAPD  241 (306)
T ss_dssp             S----CCCSSEEEBTTCCE-EEECBT-------TCCEEEECTT
T ss_pred             c----CCCCCeEECCCCCE-EEEeCC-------CCeEEEECCC
Confidence            1    34577899998864 443332       2688888865

>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1

Probab=98.88  E-value=7e-06  Score=64.56  Aligned_cols=203  Identities=4%  Similarity=-0.086  Sum_probs=120.4

Q ss_pred             eEEEEECCCCC-EEEEecCCCcEEEEeCCccccccccCCccccccCCCCceeecCCCCCCCCcccCCCCCcCcccccccc
Q 021657           12 EFALAMCPTEP-YVLSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGH   90 (309)
Q Consensus        12 V~~~~~~~~~~-~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   90 (309)
                      +.+++|++++. ++++-...+.|..+++......                                    ......+...
T Consensus        32 p~g~~~d~~~~~ly~~D~~~~~I~~~~~~g~~~~------------------------------------~~~~~~~~~~   75 (316)
T 1ijq_A           32 VVALDTEVASNRIYWSDLSQRMICSTQLDRAHGV------------------------------------SSYDTVISRD   75 (316)
T ss_dssp             EEEEEEETTTTEEEEEETTTTEEEEEEC--------------------------------------------CEEEECSS
T ss_pred             eEEEEEEeCCCEEEEEECCCCcEEEEECCCCCCC------------------------------------cccEEEEeCC
Confidence            45889988654 4556666788888887631000                                    0000011111


Q ss_pred             cCCeEEEEEecCCCcEEEEEcCCCeEEEEEcCCCCcceEEEeeccCCceeEEEeccCCCCeEEEEcCC-CcEEEEecCCC
Q 021657           91 EDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSAD-NSVRMFDRRNL  169 (309)
Q Consensus        91 ~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d-g~i~i~d~~~~  169 (309)
                      -.....+++.+.++.++++-...+.|.+.++....  ..............++++|..+.++++.... +.|..+++.. 
T Consensus        76 ~~~p~glavd~~~~~ly~~d~~~~~I~~~~~~g~~--~~~~~~~~~~~P~~iavdp~~g~ly~~d~~~~~~I~~~~~dG-  152 (316)
T 1ijq_A           76 IQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGVK--RKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNG-  152 (316)
T ss_dssp             CSCCCEEEEETTTTEEEEEETTTTEEEEEETTSSS--EEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTS-
T ss_pred             CCCcCEEEEeecCCeEEEEECCCCEEEEEeCCCCc--eEEEEECCCCCcceEEeCCCCCEEEEEccCCCCeEEEEcCCC-
Confidence            23457889987654777777788999999986543  2223333345678999998344444444333 6888888763 


Q ss_pred             CCCCCCCceeee-ccCCCCeeEEEEecCCCcEEEEecCCCcEEEEeCCcccccccCCCCCcCCCCceeeeecCCCcceee
Q 021657          170 TSNGVGSPINKF-EGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKVVD  248 (309)
Q Consensus       170 ~~~~~~~~~~~~-~~~~~~v~~~~~~~~~~~l~~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~  248 (309)
                            .....+ ...-...+.|++++++..|+++-...+.|..+|+.....             ..+............
T Consensus       153 ------~~~~~~~~~~~~~P~gla~d~~~~~lY~~D~~~~~I~~~d~dg~~~-------------~~~~~~~~~~~~P~g  213 (316)
T 1ijq_A          153 ------VDIYSLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNR-------------KTILEDEKRLAHPFS  213 (316)
T ss_dssp             ------CCEEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSC-------------EEEEECTTTTSSEEE
T ss_pred             ------CCeEEEEECCCCCceEEEEeccCCEEEEEECCCCeEEEEecCCCce-------------EEEeecCCccCCcEE
Confidence                  333333 223356789999998888888888888999999874111             112111112234566


Q ss_pred             EEEccCCCeEEEEecCCCCCCCCCCeEEEEEcc
Q 021657          249 FHWNASDPWTVVSVSDDCDSTGGGGTLQIWRMS  281 (309)
Q Consensus       249 ~~~~~~~~~~~~s~s~d~~s~~~dg~v~vw~~~  281 (309)
                      +++.  +..++++-...       +.|..++..
T Consensus       214 iav~--~~~ly~~d~~~-------~~V~~~~~~  237 (316)
T 1ijq_A          214 LAVF--EDKVFWTDIIN-------EAIFSANRL  237 (316)
T ss_dssp             EEEE--TTEEEEEETTT-------TEEEEEETT
T ss_pred             EEEE--CCEEEEEECCC-------CeEEEEeCC
Confidence            7774  45666655443       778777764

>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus}

Probab=98.86  E-value=1.1e-05  Score=64.30  Aligned_cols=160  Identities=8%  Similarity=0.001  Sum_probs=108.2

Q ss_pred             CCeEEEEEecCCCcEEEEEcCCCeEEEEEcCCCCcceEEEeeccCCceeEEEeccCCCCeEEEEcCCCcEEEEecCCCCC
Q 021657           92 DTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTS  171 (309)
Q Consensus        92 ~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~  171 (309)
                      ..+..++|++.++.++.+-...+.|..+++....  ..............+++++..++++++-...+.|.+.++..   
T Consensus        73 ~~~~~l~~d~~~~~ly~~D~~~~~I~r~~~~g~~--~~~~~~~~~~~p~glavd~~~g~ly~~d~~~~~I~~~~~dG---  147 (349)
T 3v64_C           73 ENAIALDFHHRRELVFWSDVTLDRILRANLNGSN--VEEVVSTGLESPGGLAVDWVHDKLYWTDSGTSRIEVANLDG---  147 (349)
T ss_dssp             SCEEEEEEETTTTEEEEEETTTTEEEEEETTSCS--CEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTS---
T ss_pred             CceEEEEEeccccEEEEEeccCCceEEEecCCCC--ceEEEeCCCCCccEEEEecCCCeEEEEcCCCCeEEEEcCCC---
Confidence            3478999998765777777788999999987655  23333333345678899874566667767778999999875   


Q ss_pred             CCCCCceeeeccCCCCeeEEEEecCCCcEEEEecCC-CcEEEEeCCcccccccCCCCCcCCCCceeeeecCCCcceeeEE
Q 021657          172 NGVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAED-GLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKVVDFH  250 (309)
Q Consensus       172 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~d-g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~  250 (309)
                         ......+...-...+.++++|.+.+|+.+-..+ +.|..+++......             .+  ....-...+.++
T Consensus       148 ---~~~~~l~~~~l~~P~~iavdp~~g~ly~td~~~~~~I~r~~~dG~~~~-------------~~--~~~~~~~PnGla  209 (349)
T 3v64_C          148 ---AHRKVLLWQSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMDGSGRR-------------II--ADTHLFWPNGLT  209 (349)
T ss_dssp             ---CSCEEEECTTCSCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSCE-------------ES--CCSSCSCEEEEE
T ss_pred             ---CceEEEEeCCCCCcceEEEecCcCeEEEeccCCCCEEEEEeCCCCCcE-------------EE--EECCCCCcceEE
Confidence               322222333335678999999877788776666 78888887652111             11  111233568999


Q ss_pred             EccCCCeEEEEecCCCCCCCCCCeEEEEEcc
Q 021657          251 WNASDPWTVVSVSDDCDSTGGGGTLQIWRMS  281 (309)
Q Consensus       251 ~~~~~~~~~~s~s~d~~s~~~dg~v~vw~~~  281 (309)
                      ++|++..|+++-+..       +.|..+++.
T Consensus       210 ~d~~~~~lY~aD~~~-------~~I~~~~~d  233 (349)
T 3v64_C          210 IDYAGRRMYWVDAKH-------HVIERANLD  233 (349)
T ss_dssp             EETTTTEEEEEETTT-------TEEEEEETT
T ss_pred             EeCCCCEEEEEECCC-------CEEEEEeCC
Confidence            999888888765544       788888876

>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L

Probab=98.85  E-value=2.1e-05  Score=63.97  Aligned_cols=160  Identities=3%  Similarity=-0.106  Sum_probs=100.7

Q ss_pred             CCeEEEEEecCCCcEEEEEcCCCeEEEEEcCCCCcceEEEeeccCCceeEEEeccCCCCeEEEEcC-CCcEEEEecCCCC
Q 021657           92 DTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSA-DNSVRMFDRRNLT  170 (309)
Q Consensus        92 ~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~-dg~i~i~d~~~~~  170 (309)
                      .....+++.+.++.++++-...+.|.+.++....  ..............|+++|..+.++++-.. .+.|...++..  
T Consensus       159 ~~p~glavD~~~~~lY~~d~~~~~I~~~~~~g~~--~~~l~~~~~~~P~~iavdp~~g~ly~td~~~~~~I~~~~~dG--  234 (400)
T 3p5b_L          159 QAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGVK--RKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNG--  234 (400)
T ss_dssp             SCEEEEEEETTTTEEEEEETTTTEEEEECTTTCS--EEEEEECSSCCEEEEEEETTTTEEEEEECSSSCCEEEEETTS--
T ss_pred             CCcccEEEEecCCceEEEECCCCeEEEEeCCCCc--eEEEEeCCCCCcceEEEecccCeEEEEeCCCCCEEEEEeCCC--
Confidence            4577899988555777787788999999987554  333333344567899999934444444322 37888888874  


Q ss_pred             CCCCCCceeeeccCCCCeeEEEEecCCCcEEEEecCCCcEEEEeCCcccccccCCCCCcCCCCceeeeecCCCcceeeEE
Q 021657          171 SNGVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKVVDFH  250 (309)
Q Consensus       171 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~  250 (309)
                          ..........-...+.|++++++..|+++-...+.|..+|+.....             ..+...........+++
T Consensus       235 ----~~~~~~~~~~l~~P~glavd~~~~~lY~aD~~~~~I~~~d~dG~~~-------------~~~~~~~~~l~~P~gl~  297 (400)
T 3p5b_L          235 ----VDIYSLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNR-------------KTILEDEKRLAHPFSLA  297 (400)
T ss_dssp             ----CSCEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCCC-------------EEEEECSSTTSSEEEEE
T ss_pred             ----CccEEEEECCCCceEEEEEEeCCCEEEEEECCCCEEEEEeCCCCcc-------------EEEEeCCCCCCCCEEEE
Confidence                2222222333356789999998888887777788999999865111             11222112223345666


Q ss_pred             EccCCCeEEEEecCCCCCCCCCCeEEEEEcc
Q 021657          251 WNASDPWTVVSVSDDCDSTGGGGTLQIWRMS  281 (309)
Q Consensus       251 ~~~~~~~~~~s~s~d~~s~~~dg~v~vw~~~  281 (309)
                      ..  +..++.+-...       +.|..++..
T Consensus       298 v~--~~~lywtd~~~-------~~V~~~~~~  319 (400)
T 3p5b_L          298 VF--EDKVFWTDIIN-------EAIFSANRL  319 (400)
T ss_dssp             EE--TTEEEEEESSS-------CSEEEEESS
T ss_pred             Ee--CCEEEEecCCC-------CeEEEEEcC
Confidence            63  45666655443       677777744

>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}

Probab=98.84  E-value=5.5e-06  Score=67.10  Aligned_cols=160  Identities=8%  Similarity=-0.007  Sum_probs=108.1

Q ss_pred             CCeEEEEEecCCCcEEEEEcCCCeEEEEEcCCCCcceEEEeeccCCceeEEEeccCCCCeEEEEcCCCcEEEEecCCCCC
Q 021657           92 DTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTS  171 (309)
Q Consensus        92 ~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~  171 (309)
                      ..+..++|++.++.++++-...+.|..+++....  ..............+++++..+.++++-...+.|.+.++..   
T Consensus       116 ~~~~gl~~d~~~~~ly~~D~~~~~I~r~~~~g~~--~~~~~~~~~~~p~glavd~~~g~lY~~d~~~~~I~~~~~dg---  190 (386)
T 3v65_B          116 ENAIALDFHHRRELVFWSDVTLDRILRANLNGSN--VEEVVSTGLESPGGLAVDWVHDKLYWTDSGTSRIEVANLDG---  190 (386)
T ss_dssp             SCEEEEEEETTTTEEEEEETTTTEEEEEETTSCC--EEEEECSSCSCCCCEEEETTTTEEEEEETTTTEEEECBTTS---
T ss_pred             CccEEEEEecCCCeEEEEeCCCCcEEEEecCCCC--cEEEEeCCCCCccEEEEEeCCCeEEEEcCCCCeEEEEeCCC---
Confidence            4578999998765777777788999999987655  33333333345678888874566667766778899988875   


Q ss_pred             CCCCCceeeeccCCCCeeEEEEecCCCcEEEEecCC-CcEEEEeCCcccccccCCCCCcCCCCceeeeecCCCcceeeEE
Q 021657          172 NGVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAED-GLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKVVDFH  250 (309)
Q Consensus       172 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~d-g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~  250 (309)
                         ......+...-.....|++.|.+.+|+++-..+ +.|..+++.....             ..+  ....-...+.|+
T Consensus       191 ---~~~~~l~~~~l~~P~giavdp~~g~ly~td~~~~~~I~r~~~dG~~~-------------~~~--~~~~~~~PnGla  252 (386)
T 3v65_B          191 ---AHRKVLLWQSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMDGSGR-------------RII--ADTHLFWPNGLT  252 (386)
T ss_dssp             ---CSCEEEECSSCSCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSC-------------EEE--ECSSCSCEEEEE
T ss_pred             ---CceEEeecCCCCCCcEEEEEcCCCeEEEeccCCCCEEEEEeCCCCCc-------------EEE--EECCCCCeeeEE
Confidence               332223333335678999999888788776655 7788888764111             011  112233568999


Q ss_pred             EccCCCeEEEEecCCCCCCCCCCeEEEEEcc
Q 021657          251 WNASDPWTVVSVSDDCDSTGGGGTLQIWRMS  281 (309)
Q Consensus       251 ~~~~~~~~~~s~s~d~~s~~~dg~v~vw~~~  281 (309)
                      |+|++..|+++-+..       +.|..+++.
T Consensus       253 vd~~~~~lY~aD~~~-------~~I~~~d~d  276 (386)
T 3v65_B          253 IDYAGRRMYWVDAKH-------HVIERANLD  276 (386)
T ss_dssp             EEGGGTEEEEEETTT-------TEEEEECTT
T ss_pred             EeCCCCEEEEEECCC-------CEEEEEeCC
Confidence            999888888765544       788888876

>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A

Probab=98.82  E-value=5.4e-07  Score=75.39  Aligned_cols=168  Identities=11%  Similarity=0.067  Sum_probs=105.6

Q ss_pred             CCeEEEEE-e-cCCCcEEEEE------------------cCCCeEEEEEcCCCCcceEEEeeccCCceeEEEeccCCCCe
Q 021657           92 DTVEDVTF-C-PSSAQEFCSV------------------GDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNL  151 (309)
Q Consensus        92 ~~v~~~~~-~-~~~~~~l~s~------------------~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~  151 (309)
                      ..+..+++ . |++ .+++++                  -.++.+.+.|..+.+  ....+.-.. ....++++| ++++
T Consensus       134 ~~phg~~~~~~p~~-~~v~~~~~~~~p~~~dg~~l~~~~~~~~~vtvID~~t~~--v~~qI~Vgg-~pd~~~~sp-dGk~  208 (595)
T 1fwx_A          134 KGIHGLRPQKWPRS-NYVFCNGEDETPLVNDGTNMEDVANYVNVFTAVDADKWE--VAWQVLVSG-NLDNCDADY-EGKW  208 (595)
T ss_dssp             CSEEEEEECCSSBC-SEEEEEECSCEESSCSSSSTTCGGGEEEEEEEEETTTTE--EEEEEEESS-CCCCEEECS-SSSE
T ss_pred             CCCcceeeeecCCC-cEEEEecccccccCCCCcccccccccCceEEEEECCCCe--EEEEEEeCC-CccceEECC-CCCE
Confidence            34667777 4 777 444444                  235689999998766  444433222 456788999 8888


Q ss_pred             EEEEcCCC--------------------------------------cEEEEecCCCCCCCCCCc-eeeeccCCCCeeEEE
Q 021657          152 ILTGSADN--------------------------------------SVRMFDRRNLTSNGVGSP-INKFEGHSAAVLCVQ  192 (309)
Q Consensus       152 l~~~~~dg--------------------------------------~i~i~d~~~~~~~~~~~~-~~~~~~~~~~v~~~~  192 (309)
                      +++.+.+.                                      .|.+.|.++..    ++. +..+... ....++.
T Consensus       209 ~~vt~~~se~~~~i~~~~~~~~d~v~V~~~~~~~~~v~~Gk~~~i~~V~VID~~~~~----~~~~~~~Ipvg-~~PhGv~  283 (595)
T 1fwx_A          209 AFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEIEKAIAAGDYQELNGVKVVDGRKEA----SSLFTRYIPIA-NNPHGCN  283 (595)
T ss_dssp             EEEEESCTTCCSSHHHHTCCSEEEEEEEEHHHHHHHHHHTCSEEETTEEEEECSGGG----CCSSEEEEEEE-SSCCCEE
T ss_pred             EEEEecCcccCcchhhccccccceEEEeeccceeEeccCCCeeEECcEEEEeCcccC----CceeEEEEecC-CCceEEE
Confidence            88877543                                      35566665411    122 3344322 2456799


Q ss_pred             EecCCCcEEEEecCCCcEEEEeCCcccccccCCCCCcCCCCceeeeecCCCcceeeEEEccCCCeEEEEecCCCCCCCCC
Q 021657          193 WSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKVVDFHWNASDPWTVVSVSDDCDSTGGG  272 (309)
Q Consensus       193 ~~~~~~~l~~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~s~d~~s~~~d  272 (309)
                      ++|||+++++++..+.+|.++|+.+........   ........... .-......++|+|++ +++++.-.|       
T Consensus       284 ~sPDGk~v~V~~~~s~~VsVid~~~~~~~~~~~---l~~~~~v~~~v-~vG~gP~h~aF~~dG-~aY~t~~ld-------  351 (595)
T 1fwx_A          284 MAPDKKHLCVAGKLSPTVTVLDVTRFDAVFYEN---ADPRSAVVAEP-ELGLGPLHTAFDGRG-NAYTSLFLD-------  351 (595)
T ss_dssp             ECTTSSEEEEECTTSSBEEEEEGGGHHHHHHSC---CCGGGGEEECC-BCCSCEEEEEECTTS-EEEEEETTT-------
T ss_pred             EcCCCCEEEEeCCCCCeEEEEECcccccccccc---cCcccceEEEc-CCCCCcceEEECCCC-eEEEEEecC-------
Confidence            999999999999999999999999632110000   00001111122 223457889999999 777766655       


Q ss_pred             CeEEEEEcc
Q 021657          273 GTLQIWRMS  281 (309)
Q Consensus       273 g~v~vw~~~  281 (309)
                      +.|.+||+.
T Consensus       352 sqV~kwdi~  360 (595)
T 1fwx_A          352 SQVVKWNIE  360 (595)
T ss_dssp             TEEEEEEHH
T ss_pred             CcEEEEEhh
Confidence            999999998

>1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1

Probab=98.80  E-value=3.9e-07  Score=72.85  Aligned_cols=187  Identities=11%  Similarity=0.023  Sum_probs=106.2

Q ss_pred             EEEEECCCCCEEEEecC--CCcEEE--EeCCccccccccCCccccccCCCCceeecCCCCCCCCcccCCCCC-----cCc
Q 021657           13 FALAMCPTEPYVLSGGK--DKSVVL--WSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPS-----VGP   83 (309)
Q Consensus        13 ~~~~~~~~~~~l~t~~~--dg~i~v--wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~   83 (309)
                      ..++|+|||++|+++..  +..|.+  +|+.+ ...............+..  ... ....++.+...+..+     .+.
T Consensus       127 ~~ia~SpDGk~lyVan~~~~~~v~V~~iD~~t-v~~i~v~~~~~~~p~g~~--~~~-~~~~dg~~~~vd~~~~~~~~~~v  202 (368)
T 1mda_H          127 HIIGNCASSACLLFFLFGSSAAAGLSVPGASD-DQLTKSASCFHIHPGAAA--THY-LGSCPASLAASDLAAAPAAAGIV  202 (368)
T ss_dssp             TSEEECTTSSCEEEEECSSSCEEEEEETTTEE-EEEEECSSCCCCEEEETT--EEE-CCCCTTSCEEEECCSSCCCCEEC
T ss_pred             ceEEEcCCCCEEEEEccCCCCeEEEEEEchhh-ceEEECCCceEEccCCCe--EEE-EEcCCCCEEEEECccccccCCeE
Confidence            47899999999998864  467888  99876 111111100000111111  111 112233333333332     111


Q ss_pred             c----cccccccCCeEEEEEecCCCcEEEEEcCCCeEEEEEcCCCCcceEEEeec----------cCCceeEEEeccCCC
Q 021657           84 R----GIYNGHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPVIKVEKA----------HDADLHCVDWNPLDD  149 (309)
Q Consensus        84 ~----~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~----------~~~~v~~~~~~~~~~  149 (309)
                      .    ..+.-...+.   . .++++.++++ +. +.|.+.|+..........+..          .......++++| ++
T Consensus       203 ~~~~t~~i~vg~~P~---~-~~~~~~~~~v-s~-~~V~viD~~~~~~~v~~~~~~~~~~~~~~~~~p~g~~~v~~s~-dg  275 (368)
T 1mda_H          203 GAQCTGAQNCSSQAA---Q-ANYPGMLVWA-VA-SSILQGDIPAAGATMKAAIDGNESGRKADNFRSAGFQMVAKLK-NT  275 (368)
T ss_dssp             CCCSCTTSCBCSCCE---E-ETTTTEEEEC-BS-SCCEEEECCSSCCEEECCCCSSCTHHHHTTEEECSSSCEEEET-TT
T ss_pred             EEEeeeeeeCCCCcc---c-cccCCEEEEE-cC-CEEEEEECCCCcceEEEEEEeccccccccccccCcceeeEEcC-CC
Confidence            1    1111122333   3 5666354444 44 899999986543212221110          011222378999 77


Q ss_pred             CeEEEEcC---------CCcEEEEecCCCCCCCCCCceeeeccCCCCeeEEEEecCCCcEEEEec-CCCcEEEEeCCc
Q 021657          150 NLILTGSA---------DNSVRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSA-EDGLLNIWDYEK  217 (309)
Q Consensus       150 ~~l~~~~~---------dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-~dg~i~iwd~~~  217 (309)
                      +.++++..         ++.+.++|+.+      .+.+.++.... ....|+|+|||++++++.. .++.|.++|+.+
T Consensus       276 ~~lyV~~~~~~~~~~~~~~~~~ViD~~t------~~vv~~i~vg~-~p~gi~~s~Dg~~l~va~~~~~~~VsVID~~t  346 (368)
T 1mda_H          276 DGIMILTVEHSRSCLAAAENTSSVTASV------GQTSGPISNGH-DSDAIIAAQDGASDNYANSAGTEVLDIYDAAS  346 (368)
T ss_dssp             TEEEEEEEECSSCTTSCEEEEEEEESSS------CCEEECCEEEE-EECEEEECCSSSCEEEEEETTTTEEEEEESSS
T ss_pred             CEEEEEeccccCcccccCCCEEEEECCC------CeEEEEEECCC-CcceEEECCCCCEEEEEccCCCCeEEEEECCC
Confidence            77766532         23566999999      78888886443 5789999999998777777 699999999998

>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B

Probab=98.75  E-value=2.4e-05  Score=61.52  Aligned_cols=115  Identities=3%  Similarity=-0.056  Sum_probs=79.0

Q ss_pred             CeEEEEEecCCCcEEEEEcCCCeEEEEEcCCCCcceEEEeeccCCceeEEEeccCCCCeEEEEc--CCCcEEEEecCCCC
Q 021657           93 TVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGS--ADNSVRMFDRRNLT  170 (309)
Q Consensus        93 ~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~--~dg~i~i~d~~~~~  170 (309)
                      ....+++.+.++.++++-...+.|.++++....  ..............++++| .+..|+...  ..+.|..+++..  
T Consensus        80 ~p~glavd~~~g~ly~~d~~~~~I~~~~~dG~~--~~~l~~~~~~~P~giavdp-~~g~ly~td~~~~~~I~r~~~dG--  154 (318)
T 3sov_A           80 SPDGLACDWLGEKLYWTDSETNRIEVSNLDGSL--RKVLFWQELDQPRAIALDP-SSGFMYWTDWGEVPKIERAGMDG--  154 (318)
T ss_dssp             CCCEEEEETTTTEEEEEETTTTEEEEEETTSCS--CEEEECSSCSSEEEEEEEG-GGTEEEEEECSSSCEEEEEETTS--
T ss_pred             CccEEEEEcCCCeEEEEECCCCEEEEEECCCCc--EEEEEeCCCCCccEEEEeC-CCCEEEEEecCCCCEEEEEEcCC--
Confidence            456889987665777777778899999986544  2222323445678999998 544444443  357888888763  


Q ss_pred             CCCCCCceeee-ccCCCCeeEEEEecCCCcEEEEecCCCcEEEEeCCc
Q 021657          171 SNGVGSPINKF-EGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEK  217 (309)
Q Consensus       171 ~~~~~~~~~~~-~~~~~~v~~~~~~~~~~~l~~~~~~dg~i~iwd~~~  217 (309)
                           .....+ ...-...+.|++++++..|+++-...+.|..+|+..
T Consensus       155 -----~~~~~~~~~~l~~Pnglavd~~~~~lY~aD~~~~~I~~~d~dG  197 (318)
T 3sov_A          155 -----SSRFIIINSEIYWPNGLTLDYEEQKLYWADAKLNFIHKSNLDG  197 (318)
T ss_dssp             -----CSCEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTS
T ss_pred             -----CCeEEEEECCCCCccEEEEeccCCEEEEEECCCCEEEEEcCCC
Confidence                 222232 223345789999998887888878889999999874

>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis}

Probab=98.74  E-value=2.6e-07  Score=73.11  Aligned_cols=179  Identities=16%  Similarity=0.099  Sum_probs=105.8

Q ss_pred             ceEEEEECCCCCEEEEecCCCcEEEEeCCccccccccCCccccccC---CCCceeecCCCCCCCCcccCCCCCcCccccc
Q 021657           11 AEFALAMCPTEPYVLSGGKDKSVVLWSIQDHITSSATDPATAKSAG---SSGSIIKQSPKPGDGNDKAADGPSVGPRGIY   87 (309)
Q Consensus        11 ~V~~~~~~~~~~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   87 (309)
                      .+.++...+++. |..++.+  |..+|. ++...............   ....+.   .+...+.+..++.. .+.....
T Consensus        61 ~~~~~~~~~~g~-l~v~t~~--l~~~d~-~g~~~~~~~~~~~~~~~~~~~~~~l~---v~t~~~~l~~~d~~-g~~~~~~  132 (330)
T 3hxj_A           61 IECRPSIGKDGT-IYFGSDK--VYAINP-DGTEKWRFDTKKAIVSDFTIFEDILY---VTSMDGHLYAINTD-GTEKWRF  132 (330)
T ss_dssp             EEECCEETTTTE-ECCSSCE--EEEECC-CGGGGGGSCC-----CCEEEETTEEE---EECTTSEEEEECTT-SCEEEEE
T ss_pred             cccceEEecCCc-EEEecCc--EEEECC-CCcEEEEEECCCCcccCceEECCEEE---EEecCCEEEEEcCC-CCEEEEE
Confidence            456677776665 4445554  888886 33222222111100000   011111   12234455566655 4444444


Q ss_pred             ccccCCeEEEEEecCCCcEEEEEcCCCeEEEEEcCCCCcceEEEeeccCCceeEEEeccCCCCeEEEEcCCCcEEEEecC
Q 021657           88 NGHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRR  167 (309)
Q Consensus        88 ~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~  167 (309)
                      ......+.++...+++ . +..++.++.|..+|.. ++  ...........+.++...+ ++.++ .++  +.|..+| .
T Consensus       133 ~~~~~~~~~~~~~~~g-~-l~vgt~~~~l~~~d~~-g~--~~~~~~~~~~~~~~~~~d~-~g~l~-v~t--~~l~~~d-~  202 (330)
T 3hxj_A          133 KTKKAIYATPIVSEDG-T-IYVGSNDNYLYAINPD-GT--EKWRFKTNDAITSAASIGK-DGTIY-FGS--DKVYAIN-P  202 (330)
T ss_dssp             ECSSCCCSCCEECTTS-C-EEEECTTSEEEEECTT-SC--EEEEEECSSCCCSCCEECT-TCCEE-EES--SSEEEEC-T
T ss_pred             cCCCceeeeeEEcCCC-E-EEEEcCCCEEEEECCC-CC--EeEEEecCCCceeeeEEcC-CCEEE-EEe--CEEEEEC-C
Confidence            4444456666776666 4 6667788999999987 65  4444444456677888876 66644 444  7899999 5


Q ss_pred             CCCCCCCCCceeeeccCCCCeeEEEEecCCCcEEEEecCCCcEEEEeC
Q 021657          168 NLTSNGVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDY  215 (309)
Q Consensus       168 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~dg~i~iwd~  215 (309)
                      +      ++.+..+......+.++...++|. ++ .++.++.+..+|.
T Consensus       203 ~------g~~~~~~~~~~~~~~~~~~~~~g~-l~-v~t~~~gl~~~~~  242 (330)
T 3hxj_A          203 D------GTEKWNFYAGYWTVTRPAISEDGT-IY-VTSLDGHLYAINP  242 (330)
T ss_dssp             T------SCEEEEECCSSCCCSCCEECTTSC-EE-EEETTTEEEEECT
T ss_pred             C------CcEEEEEccCCcceeceEECCCCe-EE-EEcCCCeEEEECC
Confidence            5      666766665566788889998886 44 5666788888874

>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis}

Probab=98.73  E-value=8.5e-07  Score=70.12  Aligned_cols=213  Identities=9%  Similarity=-0.007  Sum_probs=125.1

Q ss_pred             CCEEEEecCCCcEEEEeCCccccccccCCc----cccccCCCCceeecCCCCCCCCcccCCCCCcCcccccccccCCeEE
Q 021657           21 EPYVLSGGKDKSVVLWSIQDHITSSATDPA----TAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVED   96 (309)
Q Consensus        21 ~~~l~t~~~dg~i~vwd~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~   96 (309)
                      +..|..++.++.|..+|.+ +.........    ..........+..   +..++.+..++.. .+....+......+.+
T Consensus       107 ~~~l~v~t~~~~l~~~d~~-g~~~~~~~~~~~~~~~~~~~~~g~l~v---gt~~~~l~~~d~~-g~~~~~~~~~~~~~~~  181 (330)
T 3hxj_A          107 EDILYVTSMDGHLYAINTD-GTEKWRFKTKKAIYATPIVSEDGTIYV---GSNDNYLYAINPD-GTEKWRFKTNDAITSA  181 (330)
T ss_dssp             TTEEEEECTTSEEEEECTT-SCEEEEEECSSCCCSCCEECTTSCEEE---ECTTSEEEEECTT-SCEEEEEECSSCCCSC
T ss_pred             CCEEEEEecCCEEEEEcCC-CCEEEEEcCCCceeeeeEEcCCCEEEE---EcCCCEEEEECCC-CCEeEEEecCCCceee
Confidence            4567788889999999987 4322211111    0011111111111   2233556666666 5544444444556677


Q ss_pred             EEEecCCCcEEEEEcCCCeEEEEEcCCCCcceEEEeeccCCceeEEEeccCCCCeEEEEcCCCcEEEEecCCCCCCCCCC
Q 021657           97 VTFCPSSAQEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGS  176 (309)
Q Consensus        97 ~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~  176 (309)
                      +...+++ . +..++  +.|..+| .+++  ...........+.++...+ ++. +..++.++.+..+|. +      ++
T Consensus       182 ~~~d~~g-~-l~v~t--~~l~~~d-~~g~--~~~~~~~~~~~~~~~~~~~-~g~-l~v~t~~~gl~~~~~-~------g~  245 (330)
T 3hxj_A          182 ASIGKDG-T-IYFGS--DKVYAIN-PDGT--EKWNFYAGYWTVTRPAISE-DGT-IYVTSLDGHLYAINP-D------GT  245 (330)
T ss_dssp             CEECTTC-C-EEEES--SSEEEEC-TTSC--EEEEECCSSCCCSCCEECT-TSC-EEEEETTTEEEEECT-T------SC
T ss_pred             eEEcCCC-E-EEEEe--CEEEEEC-CCCc--EEEEEccCCcceeceEECC-CCe-EEEEcCCCeEEEECC-C------CC
Confidence            7777776 4 44444  7799999 5665  3444444456688888887 554 555666788888874 3      55


Q ss_pred             ceeeeccCCCCeeEEEEecCCCcEEEEecCCCcEEEEeCCcccccccCCCCCcCCCCceeeeecCCCcceeeEEEccCCC
Q 021657          177 PINKFEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKVVDFHWNASDP  256 (309)
Q Consensus       177 ~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~  256 (309)
                      .+..+......+..+.+.+++. ++ .++.+|.+..+|. . ++              .+..+......+.++...+++.
T Consensus       246 ~~~~~~~~~~~~~~~~~~~~g~-l~-v~t~~ggl~~~d~-~-g~--------------~~~~~~~~~~~~~~~~~d~~g~  307 (330)
T 3hxj_A          246 EKWRFKTGKRIESSPVIGNTDT-IY-FGSYDGHLYAINP-D-GT--------------EKWNFETGSWIIATPVIDENGT  307 (330)
T ss_dssp             EEEEEECSSCCCSCCEECTTSC-EE-EECTTCEEEEECT-T-SC--------------EEEEEECSSCCCSCCEECTTCC
T ss_pred             EeEEeeCCCCccccceEcCCCe-EE-EecCCCCEEEECC-C-Cc--------------EEEEEEcCCccccceEEcCCCE
Confidence            6666654444455666766775 44 7777888999985 3 22              2222333345567777777665


Q ss_pred             eEEEEecCCCCCCCCCCeEEEEEcc
Q 021657          257 WTVVSVSDDCDSTGGGGTLQIWRMS  281 (309)
Q Consensus       257 ~~~~s~s~d~~s~~~dg~v~vw~~~  281 (309)
                       ++        .|+.+|.+++....
T Consensus       308 -l~--------~gt~~G~~~~~~~~  323 (330)
T 3hxj_A          308 -IY--------FGTRNGKFYALFNL  323 (330)
T ss_dssp             -EE--------EECTTSCEEEEEC-
T ss_pred             -EE--------EEcCCCeEEEEecc
Confidence             44        33445899988876

>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1

Probab=98.73  E-value=4.1e-05  Score=60.18  Aligned_cols=161  Identities=9%  Similarity=-0.056  Sum_probs=104.2

Q ss_pred             CCeEEEEEecCCCcEEEEEcCCCeEEEEEcCCC---CcceEEEeeccCCceeEEEeccCCCCeEEEEcCCCcEEEEecCC
Q 021657           92 DTVEDVTFCPSSAQEFCSVGDDSCLILWDARVG---TSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRN  168 (309)
Q Consensus        92 ~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~---~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~  168 (309)
                      .....+.|++.++.++++-..++.|..+++...   .. ........-.....+++++.+++++++-...+.|.++|+..
T Consensus        30 ~~p~g~~~d~~~~~ly~~D~~~~~I~~~~~~g~~~~~~-~~~~~~~~~~~p~glavd~~~~~ly~~d~~~~~I~~~~~~g  108 (316)
T 1ijq_A           30 RNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSS-YDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKG  108 (316)
T ss_dssp             SSEEEEEEETTTTEEEEEETTTTEEEEEEC---------CEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTS
T ss_pred             CceEEEEEEeCCCEEEEEECCCCcEEEEECCCCCCCcc-cEEEEeCCCCCcCEEEEeecCCeEEEEECCCCEEEEEeCCC
Confidence            457899999876577778778899999998751   21 22222222245678999863555666667788999999874


Q ss_pred             CCCCCCCCceeeeccCCCCeeEEEEecCCCcEEEEecCC-CcEEEEeCCcccccccCCCCCcCCCCceeeeecCCCccee
Q 021657          169 LTSNGVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAED-GLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKVV  247 (309)
Q Consensus       169 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~d-g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~  247 (309)
                            ......+...-.....+++.|.+.+++++.... +.|..+++.....             ..+  ....-....
T Consensus       109 ------~~~~~~~~~~~~~P~~iavdp~~g~ly~~d~~~~~~I~~~~~dG~~~-------------~~~--~~~~~~~P~  167 (316)
T 1ijq_A          109 ------VKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDI-------------YSL--VTENIQWPN  167 (316)
T ss_dssp             ------SSEEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCCE-------------EEE--ECSSCSCEE
T ss_pred             ------CceEEEEECCCCCcceEEeCCCCCEEEEEccCCCCeEEEEcCCCCCe-------------EEE--EECCCCCce
Confidence                  222222222335678999999877777666544 7788887754111             011  112234578


Q ss_pred             eEEEccCCCeEEEEecCCCCCCCCCCeEEEEEcc
Q 021657          248 DFHWNASDPWTVVSVSDDCDSTGGGGTLQIWRMS  281 (309)
Q Consensus       248 ~~~~~~~~~~~~~s~s~d~~s~~~dg~v~vw~~~  281 (309)
                      .++++|++..++++-+..       +.|..+|+.
T Consensus       168 gla~d~~~~~lY~~D~~~-------~~I~~~d~d  194 (316)
T 1ijq_A          168 GITLDLLSGRLYWVDSKL-------HSISSIDVN  194 (316)
T ss_dssp             EEEEETTTTEEEEEETTT-------TEEEEEETT
T ss_pred             EEEEeccCCEEEEEECCC-------CeEEEEecC
Confidence            999999888888765544       788888886

>2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major}

Probab=98.71  E-value=4.1e-06  Score=73.99  Aligned_cols=158  Identities=15%  Similarity=0.062  Sum_probs=89.6

Q ss_pred             ceEEEEEC-CCCCEEEEec-CC----CcEEEEeCCcc-ccccccCCccccccCCCCceeecCCCCCCCCcccCCCCCcCc
Q 021657           11 AEFALAMC-PTEPYVLSGG-KD----KSVVLWSIQDH-ITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGP   83 (309)
Q Consensus        11 ~V~~~~~~-~~~~~l~t~~-~d----g~i~vwd~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   83 (309)
                      .+...+|| |||++||-+. .+    .+|+++|+.++ ...                                       
T Consensus       175 ~~~~~~~S~PDG~~lAy~~~~~G~~~~~l~v~dl~~g~~~l---------------------------------------  215 (751)
T 2xe4_A          175 DVMEVKPAPPEHDLVAFSVDMSGNEVYTIEFKRISDPSQTI---------------------------------------  215 (751)
T ss_dssp             EEEEEEECTTTTCEEEEEEESSSSSCEEEEEEETTCTTCCC---------------------------------------
T ss_pred             EEeeeEecCCCCCEEEEEEeCCCCceEEEEEEECCCCCEeC---------------------------------------
Confidence            46789999 9999887432 22    35999999754 210                                       


Q ss_pred             ccccccccCCeEEEEEecCCCcEEEEEcCC----CeEEEEEcCCCCcceEEEee-ccCCceeEEEeccCCCCeEEEEcC-
Q 021657           84 RGIYNGHEDTVEDVTFCPSSAQEFCSVGDD----SCLILWDARVGTSPVIKVEK-AHDADLHCVDWNPLDDNLILTGSA-  157 (309)
Q Consensus        84 ~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d----g~i~iwd~~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~~l~~~~~-  157 (309)
                      ...+..   ....+.|+|+++.++++....    ..|.++++.++.......+. ........+.|+| ++++|+.... 
T Consensus       216 ~~~~~~---~~~~~~WspDg~~l~y~~~d~~~~~~~v~~~~lgt~~~~~~lv~~~~~~~~~~~~~~Sp-Dg~~l~~~~~~  291 (751)
T 2xe4_A          216 ADKVSG---TNGEIVWGPDHTSLFYVTKDETLRENKVWRHVMGKLQSEDVCLYEEHNPLFSAFMYKAA-DTNTLCIGSQS  291 (751)
T ss_dssp             CCCEEE---ECSCCEECSSTTEEEEEEECTTCCEEEEEEEETTSCGGGCEEEEECCCTTCEEEEEECT-TSSEEEEEEEC
T ss_pred             CccccC---ceeeEEEecCCCEEEEEEECCCCCCCEEEEEECCCCchhcEEEEecCCCceEEEEEECC-CCCEEEEEecC
Confidence            000111   134678999995555554321    36888888765422223322 2233456889999 8988776553 


Q ss_pred             --CCcEEEEecCCCCCCCCCCc-eeee-ccCCCCeeEEEEecCCCcEEEEecCC--C--cEEEEeCC
Q 021657          158 --DNSVRMFDRRNLTSNGVGSP-INKF-EGHSAAVLCVQWSPDKSSVFGSSAED--G--LLNIWDYE  216 (309)
Q Consensus       158 --dg~i~i~d~~~~~~~~~~~~-~~~~-~~~~~~v~~~~~~~~~~~l~~~~~~d--g--~i~iwd~~  216 (309)
                        ...|+++|+.+..    ... +..+ ........++.|+. |..+++....+  +  .|..+|+.
T Consensus       292 ~~~~~l~~~d~~~~~----~~~~~~~l~~~~~~~~~s~~~~~-g~~l~~~t~~~~a~~~~L~~~d~~  353 (751)
T 2xe4_A          292 PETAEVHLLDLRKGN----AHNTLEIVRPREKGVRYDVQMHG-TSHLVILTNEGGAVNHKLLIAPRG  353 (751)
T ss_dssp             SSCEEEEEEESSSCT----TCCCEEESSCCCTTCCEEEEEET-TTEEEEEECTTTCTTCEEEEEETT
T ss_pred             CCCceEEEEECCCCC----CCceeEEeecCCCCceEEEeeee-CCEEEEEeCCCCCCCcEEEEEcCC
Confidence              3468888987621    122 1333 22334455555544 55555555544  3  45555554

>2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens}

Probab=98.71  E-value=8.2e-10  Score=89.04  Aligned_cols=137  Identities=14%  Similarity=0.068  Sum_probs=70.2

Q ss_pred             cEEEEEcCCCeEEEEEcCCCCcceEEEeeccCCceeEEEeccCCCCeEEEEcCCCcEEEEecCCCCCCCCCCceeeeccC
Q 021657          105 QEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGH  184 (309)
Q Consensus       105 ~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~  184 (309)
                      ..+++++.||.|+.||..+++  ..-.+..  ..+.+..+.. ++..+++++.||.|+.||..+      ++.+..+..+
T Consensus        10 ~~v~~gs~dg~v~a~d~~tG~--~~W~~~~--~~~~s~p~~~-~g~~~v~~s~dg~l~a~d~~t------G~~~w~~~~~   78 (369)
T 2hz6_A           10 TLLFVSTLDGSLHAVSKRTGS--IKWTLKE--DPVLQVPTHV-EEPAFLPDPNDGSLYTLGSKN------NEGLTKLPFT   78 (369)
T ss_dssp             TEEEEEETTSEEEEEETTTCC--EEEEEEC--CCSCCCC------CCEEECTTTCCEEEC-----------CCSEECSCC
T ss_pred             CEEEEEcCCCEEEEEECCCCC--EEEEecC--CCceecceEc-CCCEEEEeCCCCEEEEEECCC------Cceeeeeecc
Confidence            578889999999999999998  4444443  4555555556 677888888999999999988      6666555432


Q ss_pred             CC-Cee-EEEEecCCCcEEEEecCCCcEEEEeCCcccccccCCCCCcCCCCceeeeecCCCcceeeEEEccCCCeEEEEe
Q 021657          185 SA-AVL-CVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKVVDFHWNASDPWTVVSV  262 (309)
Q Consensus       185 ~~-~v~-~~~~~~~~~~l~~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~  262 (309)
                      .. .+. +..+..++ . +++++.|+.++.||.++ ++.              +..+..+.    ...++|++..++ ++
T Consensus        79 ~~~~~~~sp~~~~~~-~-v~~g~~dg~v~a~D~~t-G~~--------------~w~~~~~~----~~~~~p~~~~v~-~~  136 (369)
T 2hz6_A           79 IPELVQASPCRSSDG-I-LYMGKKQDIWYVIDLLT-GEK--------------QQTLSSAF----ADSLSPSTSLLY-LG  136 (369)
T ss_dssp             HHHHHTTCSCC-------CCCCEEEEEEEEECCC-----------------------------------------EE-EE
T ss_pred             CccccccCceEecCC-E-EEEEeCCCEEEEEECCC-CcE--------------EEEecCCC----cccccccCCEEE-EE
Confidence            11 010 11111233 3 44778899999999987 332              22222221    133456566555 33


Q ss_pred             cCCCCCCCCCCeEEEEEcc
Q 021657          263 SDDCDSTGGGGTLQIWRMS  281 (309)
Q Consensus       263 s~d~~s~~~dg~v~vw~~~  281 (309)
                      +.|       +.|+.||..
T Consensus       137 ~~d-------g~v~a~d~~  148 (369)
T 2hz6_A          137 RTE-------YTITMYDTK  148 (369)
T ss_dssp             EEE-------EEEECCCSS
T ss_pred             ecC-------CEEEEEECC
Confidence            444       899999987

>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*

Probab=98.71  E-value=2.9e-06  Score=64.26  Aligned_cols=153  Identities=14%  Similarity=0.081  Sum_probs=100.0

Q ss_pred             eEEEEEecCCCcEEEEEcC--CCeEEEEEcCCCCcceEEEeec-cCCceeEEEeccCCCCeEEEEcCCCcEEEEecCCCC
Q 021657           94 VEDVTFCPSSAQEFCSVGD--DSCLILWDARVGTSPVIKVEKA-HDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLT  170 (309)
Q Consensus        94 v~~~~~~~~~~~~l~s~~~--dg~i~iwd~~~~~~~~~~~~~~-~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~  170 (309)
                      ...+.|++++ .++++.+.  ++.|.+.|+.+++  ....... .......+++..  +...++.-.++.+.++|..+  
T Consensus        23 ~~Gl~~~~dg-~Lyvstg~~~~s~v~~iD~~tg~--v~~~i~l~~~~fgeGi~~~g--~~lyv~t~~~~~v~viD~~t--   95 (266)
T 2iwa_A           23 TQGLVYAEND-TLFESTGLYGRSSVRQVALQTGK--VENIHKMDDSYFGEGLTLLN--EKLYQVVWLKNIGFIYDRRT--   95 (266)
T ss_dssp             EEEEEECSTT-EEEEEECSTTTCEEEEEETTTCC--EEEEEECCTTCCEEEEEEET--TEEEEEETTCSEEEEEETTT--
T ss_pred             cccEEEeCCC-eEEEECCCCCCCEEEEEECCCCC--EEEEEecCCCcceEEEEEeC--CEEEEEEecCCEEEEEECCC--
Confidence            5799999986 66666553  6899999999998  4444432 112223455543  45556666789999999998  


Q ss_pred             CCCCCCceeeeccCCCCeeEEEEecCCCcEEEEecCCCcEEEEeCCcccccccCCCCCcCCCCceeeeecCCC---ccee
Q 021657          171 SNGVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHR---DKVV  247 (309)
Q Consensus       171 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~v~  247 (309)
                          .+.+.++... .+ ....+++||..++++- .++.|.++|..+.....            .+ ....+.   ..++
T Consensus        96 ----~~v~~~i~~g-~~-~g~glt~Dg~~l~vs~-gs~~l~viD~~t~~v~~------------~I-~Vg~~~~p~~~~n  155 (266)
T 2iwa_A           96 ----LSNIKNFTHQ-MK-DGWGLATDGKILYGSD-GTSILYEIDPHTFKLIK------------KH-NVKYNGHRVIRLN  155 (266)
T ss_dssp             ----TEEEEEEECC-SS-SCCEEEECSSSEEEEC-SSSEEEEECTTTCCEEE------------EE-ECEETTEECCCEE
T ss_pred             ----CcEEEEEECC-CC-CeEEEEECCCEEEEEC-CCCeEEEEECCCCcEEE------------EE-EECCCCcccccce
Confidence                8888888643 11 2345677888887655 58899999988732211            01 111111   2356


Q ss_pred             eEEEccCCCeEEEEecCCCCCCCCCCeEEEEEccc
Q 021657          248 DFHWNASDPWTVVSVSDDCDSTGGGGTLQIWRMSD  282 (309)
Q Consensus       248 ~~~~~~~~~~~~~s~s~d~~s~~~dg~v~vw~~~~  282 (309)
                      .+.|. ++ .+++....+       +.|.+-|...
T Consensus       156 ele~~-dg-~lyvn~~~~-------~~V~vID~~t  181 (266)
T 2iwa_A          156 ELEYI-NG-EVWANIWQT-------DCIARISAKD  181 (266)
T ss_dssp             EEEEE-TT-EEEEEETTS-------SEEEEEETTT
T ss_pred             eEEEE-CC-EEEEecCCC-------CeEEEEECCC
Confidence            78888 44 677765444       7999999983

>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*

Probab=98.69  E-value=1.2e-05  Score=63.38  Aligned_cols=229  Identities=10%  Similarity=-0.021  Sum_probs=124.0

Q ss_pred             EEEEECCCCCEEEEecCCCcEEEEeCCccccc-cccC----------------------CccccccCC-CCceeecCCCC
Q 021657           13 FALAMCPTEPYVLSGGKDKSVVLWSIQDHITS-SATD----------------------PATAKSAGS-SGSIIKQSPKP   68 (309)
Q Consensus        13 ~~~~~~~~~~~l~t~~~dg~i~vwd~~~~~~~-~~~~----------------------~~~~~~~~~-~~~~~~~~~~~   68 (309)
                      .+++|+++++++.++..++.|..|+..+.... ....                      ......... ...+...... 
T Consensus        22 ~~i~~d~~g~~l~v~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~p~gi~~~~~~g~l~v~d~~-  100 (322)
T 2fp8_A           22 NSFTFDSTNKGFYTSVQDGRVIKYEGPNSGFVDFAYASPYWNKAFCENSTDAEKRPLCGRTYDISYNLQNNQLYIVDCY-  100 (322)
T ss_dssp             CCEECCTTCSSEEEECTTSEEEEECCTTTCEEEEEESCTTCCHHHHTTCCCGGGHHHHCCEEEEEEETTTTEEEEEETT-
T ss_pred             eEEEEcCCCCEEEEEcCCCeEEEECCCCCceEEEecccccccccccccccchhccccCCCCceEEEcCCCCcEEEEECC-
Confidence            57899999988888889999999998764221 1000                      000011111 1111111111 


Q ss_pred             CCCCcccCCCCCcCcccccc----c-ccCCeEEEEEec-CCCcEEEEEcC-----------------CCeEEEEEcCCCC
Q 021657           69 GDGNDKAADGPSVGPRGIYN----G-HEDTVEDVTFCP-SSAQEFCSVGD-----------------DSCLILWDARVGT  125 (309)
Q Consensus        69 ~~~~~~~~~~~~~~~~~~~~----~-~~~~v~~~~~~~-~~~~~l~s~~~-----------------dg~i~iwd~~~~~  125 (309)
                        ..+..++...... ..+.    + .......+++.+ +| .++++-..                 ++.|..+|..+++
T Consensus       101 --~~i~~~d~~~g~~-~~~~~~~~~~~~~~p~~i~~d~~~G-~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~  176 (322)
T 2fp8_A          101 --YHLSVVGSEGGHA-TQLATSVDGVPFKWLYAVTVDQRTG-IVYFTDVSTLYDDRGVQQIMDTSDKTGRLIKYDPSTKE  176 (322)
T ss_dssp             --TEEEEECTTCEEC-EEEESEETTEECSCEEEEEECTTTC-CEEEEESCSSCCTTCHHHHHHHTCCCEEEEEEETTTTE
T ss_pred             --CCEEEEeCCCCEE-EEecccCCCCcccccceEEEecCCC-EEEEECCcccccccccceehcccCCCceEEEEeCCCCE
Confidence              1244444433221 1111    1 113468899999 88 65555432                 3678888876655


Q ss_pred             cceEEEeeccCCceeEEEeccCCCCeEEEE-cCCCcEEEEecCCCCCCCCCCceeeeccCCCCeeEEEEecCCCcEEEEe
Q 021657          126 SPVIKVEKAHDADLHCVDWNPLDDNLILTG-SADNSVRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWSPDKSSVFGSS  204 (309)
Q Consensus       126 ~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~-~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~  204 (309)
                        ..... ........++++| +++.|..+ ...+.|..|++.....   + ....+....+ ...+++.++|. ++++.
T Consensus       177 --~~~~~-~~~~~p~gia~~~-dg~~lyv~d~~~~~I~~~~~~~~~~---~-~~~~~~~~~g-P~gi~~d~~G~-l~va~  246 (322)
T 2fp8_A          177 --TTLLL-KELHVPGGAEVSA-DSSFVLVAEFLSHQIVKYWLEGPKK---G-TAEVLVKIPN-PGNIKRNADGH-FWVSS  246 (322)
T ss_dssp             --EEEEE-EEESCCCEEEECT-TSSEEEEEEGGGTEEEEEESSSTTT---T-CEEEEEECSS-EEEEEECTTSC-EEEEE
T ss_pred             --EEEec-cCCccCcceEECC-CCCEEEEEeCCCCeEEEEECCCCcC---C-ccceEEeCCC-CCCeEECCCCC-EEEEe
Confidence              22221 2223456899999 88755544 5678999999875210   1 1122211223 77899999998 45454


Q ss_pred             cC----------CCcEEEEeCCcccccccCCCCCcCCCCceeeeecCC----CcceeeEEEccCCCeEEEEecCCCCCCC
Q 021657          205 AE----------DGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGH----RDKVVDFHWNASDPWTVVSVSDDCDSTG  270 (309)
Q Consensus       205 ~~----------dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~v~~~~~~~~~~~~~~s~s~d~~s~~  270 (309)
                      ..          .+.|..+|..  ++.              +..+...    ...+..+++.  +..|+++...+     
T Consensus       247 ~~~~~~~~~~~~~~~v~~~d~~--G~~--------------~~~~~~~~g~~~~~~~~~~~~--~g~L~v~~~~~-----  303 (322)
T 2fp8_A          247 SEELDGNMHGRVDPKGIKFDEF--GNI--------------LEVIPLPPPFAGEHFEQIQEH--DGLLYIGTLFH-----  303 (322)
T ss_dssp             EEETTSSTTSCEEEEEEEECTT--SCE--------------EEEEECCTTTTTSCCCEEEEE--TTEEEEECSSC-----
T ss_pred             cCcccccccCCCccEEEEECCC--CCE--------------EEEEECCCCCccccceEEEEe--CCEEEEeecCC-----
Confidence            33          3567777653  221              1111111    2345666663  45667654433     


Q ss_pred             CCCeEEEEEcc
Q 021657          271 GGGTLQIWRMS  281 (309)
Q Consensus       271 ~dg~v~vw~~~  281 (309)
                        +.|..+++.
T Consensus       304 --~~i~~~~~~  312 (322)
T 2fp8_A          304 --GSVGILVYD  312 (322)
T ss_dssp             --SEEEEEEC-
T ss_pred             --CceEEEecc
Confidence              799999987

>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}

Probab=98.68  E-value=3.7e-06  Score=73.38  Aligned_cols=82  Identities=6%  Similarity=0.028  Sum_probs=54.9

Q ss_pred             CCcEEEEecCCCCCCCCCCceeeeccCCCCeeEEEEecCCCcEEEEecCCCcEEEEeCCcccccccCCCCCcCCCCceee
Q 021657          158 DNSVRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFF  237 (309)
Q Consensus       158 dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~  237 (309)
                      +|.|+.||+.+      ++.+.++..+. +...-.+...+. ++..++.||.++.||.++               .+.+.
T Consensus       454 ~g~l~A~D~~t------G~~~W~~~~~~-~~~~g~~~tagg-lvf~gt~dg~l~a~D~~t---------------G~~lw  510 (689)
T 1yiq_A          454 SGKLIAWDPVK------QQAAWEVPYVT-IFNGGTLSTAGN-LVFEGSADGRVIAYAADT---------------GEKLW  510 (689)
T ss_dssp             EEEEEEEETTT------TEEEEEEEESS-SCCCCEEEETTT-EEEEECTTSEEEEEETTT---------------CCEEE
T ss_pred             ceeEEEEECCC------CCeEeEccCCC-CccCccceECCC-EEEEECCCCcEEEEECCC---------------Cccce
Confidence            37799999999      88888876543 333335566666 455889999999999998               33444


Q ss_pred             eecCCCc-ceeeEEEccCCCeEEEEe
Q 021657          238 QHAGHRD-KVVDFHWNASDPWTVVSV  262 (309)
Q Consensus       238 ~~~~~~~-~v~~~~~~~~~~~~~~s~  262 (309)
                      .+..... ...-+.|..++..+++..
T Consensus       511 ~~~~~~~~~~~p~ty~~~G~qyv~~~  536 (689)
T 1yiq_A          511 EQPAASGVMAAPVTYSVDGEQYVTFM  536 (689)
T ss_dssp             EEECSSCCCSCCEEEEETTEEEEEEE
T ss_pred             eeeCCCCcccCceEEEECCEEEEEEE
Confidence            4443322 224466777777666654

>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A

Probab=98.68  E-value=2.8e-06  Score=63.67  Aligned_cols=149  Identities=11%  Similarity=0.076  Sum_probs=95.3

Q ss_pred             eEEEEEecCCCcEEEEEcCCC--eEEEEEcCCCCcceEEEeeccCCceeEEEeccCCCCeEEEEcCCCcEEEEecCCCCC
Q 021657           94 VEDVTFCPSSAQEFCSVGDDS--CLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTS  171 (309)
Q Consensus        94 v~~~~~~~~~~~~l~s~~~dg--~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~  171 (309)
                      ...+.|+ ++ .++.+.+.+|  .|+.+|+.+++  ........ .........+.++...++.-.++.+.+||..+   
T Consensus        45 tqGL~~~-~~-~LyestG~~g~S~v~~vD~~Tgk--v~~~~~l~-~~~FgeGit~~g~~ly~ltw~~~~v~v~D~~t---  116 (262)
T 3nol_A           45 TEGFFYR-NG-YFYESTGLNGRSSIRKVDIESGK--TLQQIELG-KRYFGEGISDWKDKIVGLTWKNGLGFVWNIRN---  116 (262)
T ss_dssp             EEEEEEE-TT-EEEEEEEETTEEEEEEECTTTCC--EEEEEECC-TTCCEEEEEEETTEEEEEESSSSEEEEEETTT---
T ss_pred             cceEEEE-CC-EEEEECCCCCCceEEEEECCCCc--EEEEEecC-CccceeEEEEeCCEEEEEEeeCCEEEEEECcc---
Confidence            4788888 55 7788887776  89999999998  44444332 23333223331345555555689999999999   


Q ss_pred             CCCCCceeeeccCCCCeeEEEEecCCCcEEEEecCCCcEEEEeCCcccccccCCCCCcCCCCceeeeecC--CC---cce
Q 021657          172 NGVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAG--HR---DKV  246 (309)
Q Consensus       172 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~---~~v  246 (309)
                         .+.+.++....   ....+++++..|+++- .++.|.++|..+...               ......  ..   ..+
T Consensus       117 ---~~~~~ti~~~~---eG~glt~dg~~L~~Sd-Gs~~i~~iDp~T~~v---------------~~~I~V~~~g~~~~~l  174 (262)
T 3nol_A          117 ---LRQVRSFNYDG---EGWGLTHNDQYLIMSD-GTPVLRFLDPESLTP---------------VRTITVTAHGEELPEL  174 (262)
T ss_dssp             ---CCEEEEEECSS---CCCCEEECSSCEEECC-SSSEEEEECTTTCSE---------------EEEEECEETTEECCCE
T ss_pred             ---CcEEEEEECCC---CceEEecCCCEEEEEC-CCCeEEEEcCCCCeE---------------EEEEEeccCCcccccc
Confidence               88888887533   2244557788776554 478899999887322               111111  11   234


Q ss_pred             eeEEEccCCCeEEEEecCCCCCCCCCCeEEEEEcc
Q 021657          247 VDFHWNASDPWTVVSVSDDCDSTGGGGTLQIWRMS  281 (309)
Q Consensus       247 ~~~~~~~~~~~~~~s~s~d~~s~~~dg~v~vw~~~  281 (309)
                      +.+.|.  +..+++..-.+       +.|.+.|..
T Consensus       175 NELe~~--~G~lyan~w~~-------~~I~vIDp~  200 (262)
T 3nol_A          175 NELEWV--DGEIFANVWQT-------NKIVRIDPE  200 (262)
T ss_dssp             EEEEEE--TTEEEEEETTS-------SEEEEECTT
T ss_pred             ceeEEE--CCEEEEEEccC-------CeEEEEECC
Confidence            567776  34567655444       678888877

>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1

Probab=98.68  E-value=4.7e-06  Score=72.57  Aligned_cols=156  Identities=11%  Similarity=0.099  Sum_probs=97.8

Q ss_pred             cCCC--cEEEEEcCCCeEEEEEcCCCCcceEEEeeccC-----------Cce------------------------eEEE
Q 021657          101 PSSA--QEFCSVGDDSCLILWDARVGTSPVIKVEKAHD-----------ADL------------------------HCVD  143 (309)
Q Consensus       101 ~~~~--~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~-----------~~v------------------------~~~~  143 (309)
                      .+|+  ..++.++.+|.|+++|..+++  .+.......           .++                        ..++
T Consensus       322 ~dG~~~~~l~~~~~~G~l~~lD~~tG~--~l~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~P~~~G~~~w~~~a  399 (677)
T 1kb0_A          322 IAGKPRKVILHAPKNGFFFVLDRTNGK--FISAKNFVPVNWASGYDKHGKPIGIAAARDGSKPQDAVPGPYGAHNWHPMS  399 (677)
T ss_dssp             ETTEEEEEEEECCTTSEEEEEETTTCC--EEEEEESSCCSSEEEECTTSCEEECGGGGCTTSCEECSSCTTCSSCSSCCE
T ss_pred             cCCcEeeEEEEECCCCEEEEEECCCCC--EeccccccccCcccccCCCCceeeccccCcCCCccEECcCcccccCCCCce
Confidence            4552  568899999999999999988  332222110           011                        2578


Q ss_pred             eccCCCCeEEEEcC-------------------------------------------CCcEEEEecCCCCCCCCCCceee
Q 021657          144 WNPLDDNLILTGSA-------------------------------------------DNSVRMFDRRNLTSNGVGSPINK  180 (309)
Q Consensus       144 ~~~~~~~~l~~~~~-------------------------------------------dg~i~i~d~~~~~~~~~~~~~~~  180 (309)
                      ++| +..++++...                                           .|.|..||+.+      ++.+.+
T Consensus       400 ~dp-~~~~~yv~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~l~A~D~~t------G~~~W~  472 (677)
T 1kb0_A          400 FNP-QTGLVYLPAQNVPVNLMDDKKWEFNQAGPGKPQSGTGWNTAKFFNAEPPKSKPFGRLLAWDPVA------QKAAWS  472 (677)
T ss_dssp             EET-TTTEEEEEEEECCCEEEECTTCCTTCCCTTSTTGGGTCCCCEEECSSCCCSCCEEEEEEEETTT------TEEEEE
T ss_pred             EcC-CCCEEEEeChhcceeeecccccccccccccccccccccccccccccccCCCCCccEEEEEeCCC------CcEEee
Confidence            888 6677766532                                           27899999998      888877


Q ss_pred             eccCCCCeeEEEEecCCCcEEEEecCCCcEEEEeCCcccccccCCCCCcCCCCceeeeecCC-CcceeeEEEccCCCeEE
Q 021657          181 FEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGH-RDKVVDFHWNASDPWTV  259 (309)
Q Consensus       181 ~~~~~~~v~~~~~~~~~~~l~~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~v~~~~~~~~~~~~~  259 (309)
                      +.. ..++....+..++..+ +.++.||.+++||.++               .+.+..+... .....-+.|.+++..++
T Consensus       473 ~~~-~~~~~~g~~~~~g~~v-~~g~~dg~l~a~D~~t---------------G~~lw~~~~~~~~~~~p~~y~~~G~~~v  535 (677)
T 1kb0_A          473 VEH-VSPWNGGTLTTAGNVV-FQGTADGRLVAYHAAT---------------GEKLWEAPTGTGVVAAPSTYMVDGRQYV  535 (677)
T ss_dssp             EEE-SSSCCCCEEEETTTEE-EEECTTSEEEEEETTT---------------CCEEEEEECSSCCCSCCEEEEETTEEEE
T ss_pred             cCC-CCCCcCcceEeCCCEE-EEECCCCcEEEEECCC---------------CceeeeeeCCCCcccCCEEEEeCCEEEE
Confidence            763 3444555667777754 4788999999999998               3334444322 22234456667776665


Q ss_pred             EEecC-C--------CCCCCCCCeEEEEEccc
Q 021657          260 VSVSD-D--------CDSTGGGGTLQIWRMSD  282 (309)
Q Consensus       260 ~s~s~-d--------~~s~~~dg~v~vw~~~~  282 (309)
                      +..+. .        -......+.+..|.+..
T Consensus       536 ~~~~G~~~~~~~~~~~~~~~~~~~l~~f~l~~  567 (677)
T 1kb0_A          536 SVAVGWGGVYGLAARATERQGPGTVYTFVVGG  567 (677)
T ss_dssp             EEEECCCHHHHHHCCSCSCCCCCEEEEEEETC
T ss_pred             EEeccCCccccccccccccCCCCeEEEEeccc
Confidence            54321 0        00011147888999874

>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A

Probab=98.67  E-value=3.4e-06  Score=70.67  Aligned_cols=164  Identities=9%  Similarity=0.024  Sum_probs=102.8

Q ss_pred             cCCCcEEEEEcCCCeEEEEEcCCCCcceEEEee-ccCCceeEEEe-c-cCCCCeEEEEc------------------CCC
Q 021657          101 PSSAQEFCSVGDDSCLILWDARVGTSPVIKVEK-AHDADLHCVDW-N-PLDDNLILTGS------------------ADN  159 (309)
Q Consensus       101 ~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~-~~~~~v~~~~~-~-~~~~~~l~~~~------------------~dg  159 (309)
                      +||+.++++...++.|.+.|+.+.+  ....+. ........+++ . | ++.++++++                  .++
T Consensus        99 ~DG~~lfVnd~~~~rVavIdl~t~~--~~~ii~ip~g~~phg~~~~~~p-~~~~v~~~~~~~~p~~~dg~~l~~~~~~~~  175 (595)
T 1fwx_A           99 YDGRFLFMNDKANTRVARVRCDVMK--CDAILEIPNAKGIHGLRPQKWP-RSNYVFCNGEDETPLVNDGTNMEDVANYVN  175 (595)
T ss_dssp             EEEEEEEEEETTTTEEEEEETTTTE--EEEEEECSSCCSEEEEEECCSS-BCSEEEEEECSCEESSCSSSSTTCGGGEEE
T ss_pred             cCCCEEEEEcCCCCEEEEEECCCce--EeeEEeCCCCCCCcceeeeecC-CCcEEEEecccccccCCCCcccccccccCc
Confidence            4775667777778889999999887  444322 22345788887 4 8 888888874                  346


Q ss_pred             cEEEEecCCCCCCCCCCceeeeccCCCCeeEEEEecCCCcEEEEecCC--------------CcEEEEeCCcccccccCC
Q 021657          160 SVRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAED--------------GLLNIWDYEKVGKKVEQG  225 (309)
Q Consensus       160 ~i~i~d~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~d--------------g~i~iwd~~~~~~~~~~~  225 (309)
                      .+.++|..+      .+.+.++.... ...-++++|+|+++++++...              ..|.+.|...........
T Consensus       176 ~vtvID~~t------~~v~~qI~Vgg-~pd~~~~spdGk~~~vt~~~se~~~~i~~~~~~~~d~v~V~~~~~~~~~v~~G  248 (595)
T 1fwx_A          176 VFTAVDADK------WEVAWQVLVSG-NLDNCDADYEGKWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEIEKAIAAG  248 (595)
T ss_dssp             EEEEEETTT------TEEEEEEEESS-CCCCEEECSSSSEEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHHHHHHHHHT
T ss_pred             eEEEEECCC------CeEEEEEEeCC-CccceEECCCCCEEEEEecCcccCcchhhccccccceEEEeeccceeEeccCC
Confidence            799999998      77777776433 456788999999987666443              235555544311100000


Q ss_pred             CCCc-C------CC---Cce-eeeecCCCcceeeEEEccCCCeEEEEecCCCCCCCCCCeEEEEEccc
Q 021657          226 PRTT-N------YP---AGL-FFQHAGHRDKVVDFHWNASDPWTVVSVSDDCDSTGGGGTLQIWRMSD  282 (309)
Q Consensus       226 ~~~~-~------~~---~~~-~~~~~~~~~~v~~~~~~~~~~~~~~s~s~d~~s~~~dg~v~vw~~~~  282 (309)
                      .... +      ..   ... +..... .....++.++||+.+++++...+       .+|.++|+..
T Consensus       249 k~~~i~~V~VID~~~~~~~~~~~~Ipv-g~~PhGv~~sPDGk~v~V~~~~s-------~~VsVid~~~  308 (595)
T 1fwx_A          249 DYQELNGVKVVDGRKEASSLFTRYIPI-ANNPHGCNMAPDKKHLCVAGKLS-------PTVTVLDVTR  308 (595)
T ss_dssp             CSEEETTEEEEECSGGGCCSSEEEEEE-ESSCCCEEECTTSSEEEEECTTS-------SBEEEEEGGG
T ss_pred             CeeEECcEEEEeCcccCCceeEEEEec-CCCceEEEEcCCCCEEEEeCCCC-------CeEEEEECcc
Confidence            0000 0      00   001 111111 12457799999999999855544       8999999993

>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}

Probab=98.65  E-value=3.8e-05  Score=67.70  Aligned_cols=117  Identities=4%  Similarity=-0.049  Sum_probs=81.9

Q ss_pred             CCeEEEEEecCCCcEEEEEcCCCeEEEEEcCCCCcceEEEeeccCCceeEEEeccCCCCeEEEEcCC-CcEEEEecCCCC
Q 021657           92 DTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSAD-NSVRMFDRRNLT  170 (309)
Q Consensus        92 ~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d-g~i~i~d~~~~~  170 (309)
                      .....|++.+.+++++++-...+.|.+.++....  ..............|+++|..+.++++-... +.|...++..  
T Consensus       471 ~~P~GLAvD~~~~~LY~tD~~~~~I~v~~ldG~~--~~~l~~~~l~~P~gIaVDp~~g~LYwtD~g~~~~I~~~~~dG--  546 (791)
T 3m0c_C          471 QAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGVK--RKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNG--  546 (791)
T ss_dssp             SCCCEEEEETTTTEEEEEETTTTEEEEEETTSSS--EEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTS--
T ss_pred             CCcceeeeeecCCcEEEEecCCCeEEEEeCCCCe--EEEEEeCCCCCcceEEEecCCCCEEEecCCCCCeEEEEecCC--
Confidence            4567889988776788888888999999987544  2333333445688999999334455544333 6788888874  


Q ss_pred             CCCCCCceeee-ccCCCCeeEEEEecCCCcEEEEecCCCcEEEEeCCc
Q 021657          171 SNGVGSPINKF-EGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEK  217 (309)
Q Consensus       171 ~~~~~~~~~~~-~~~~~~v~~~~~~~~~~~l~~~~~~dg~i~iwd~~~  217 (309)
                           .....+ ...-...+.|++++.+..|+++-...+.|..+++..
T Consensus       547 -----~~~~~lv~~~l~~P~GLavD~~~~~LYwaD~~~~~I~~~d~dG  589 (791)
T 3m0c_C          547 -----VDIYSLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNG  589 (791)
T ss_dssp             -----CCEEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTS
T ss_pred             -----CceEEEEeCCCCCceEEEEecCCCeEEEEeCCCCcEEEEecCC
Confidence                 333333 333357889999988887887777778899998865

>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A

Probab=98.63  E-value=3.2e-06  Score=68.29  Aligned_cols=177  Identities=12%  Similarity=0.062  Sum_probs=100.5

Q ss_pred             CCCEEEEecCCCcEEEEeCCccccccccCCcccc--ccCCCCceeecCCCCCCCCcccCCCCCcCcccccccccCCe---
Q 021657           20 TEPYVLSGGKDKSVVLWSIQDHITSSATDPATAK--SAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTV---   94 (309)
Q Consensus        20 ~~~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v---   94 (309)
                      ++..++.++.++.|..+|.+++............  .+........  ....++.+..++..+++.+..........   
T Consensus       102 ~~~~v~v~~~~g~l~a~d~~tG~~~W~~~~~~~~~~~p~~~~~~v~--v~~~~g~l~~~d~~tG~~~W~~~~~~~~~~~~  179 (376)
T 3q7m_A          102 SGGHVYIGSEKAQVYALNTSDGTVAWQTKVAGEALSRPVVSDGLVL--IHTSNGQLQALNEADGAVKWTVNLDMPSLSLR  179 (376)
T ss_dssp             ETTEEEEEETTSEEEEEETTTCCEEEEEECSSCCCSCCEEETTEEE--EECTTSEEEEEETTTCCEEEEEECCC-----C
T ss_pred             eCCEEEEEcCCCEEEEEECCCCCEEEEEeCCCceEcCCEEECCEEE--EEcCCCeEEEEECCCCcEEEEEeCCCCceeec
Confidence            4567888888999999999887544332221110  0000011111  12234566677776666655443322111   


Q ss_pred             --EEEEEecCCCcEEEEEcCCCeEEEEEcCCCCcceEEEeeccCC--c--------e-eEEEeccCCCCeEEEEcCCCcE
Q 021657           95 --EDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPVIKVEKAHDA--D--------L-HCVDWNPLDDNLILTGSADNSV  161 (309)
Q Consensus        95 --~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~--~--------v-~~~~~~~~~~~~l~~~~~dg~i  161 (309)
                        ...... +  ..++.+..++.|..+|..+++  ..........  .        + .....   .+..++.++.++.+
T Consensus       180 ~~~~~~~~-~--~~v~~g~~~g~l~~~d~~tG~--~~w~~~~~~~~~~~~~~~~~~~~~~p~~---~~~~v~~~~~~g~l  251 (376)
T 3q7m_A          180 GESAPTTA-F--GAAVVGGDNGRVSAVLMEQGQ--MIWQQRISQATGSTEIDRLSDVDTTPVV---VNGVVFALAYNGNL  251 (376)
T ss_dssp             CCCCCEEE-T--TEEEECCTTTEEEEEETTTCC--EEEEEECCC-----------CCCCCCEE---ETTEEEEECTTSCE
T ss_pred             CCCCcEEE-C--CEEEEEcCCCEEEEEECCCCc--EEEEEecccCCCCcccccccccCCCcEE---ECCEEEEEecCcEE
Confidence              112222 2  357778889999999998887  3333221110  0        1 11111   24667777889999


Q ss_pred             EEEecCCCCCCCCCCceeeeccCCCCeeEEEEecCCCcEEEEecCCCcEEEEeCCc
Q 021657          162 RMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEK  217 (309)
Q Consensus       162 ~i~d~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~dg~i~iwd~~~  217 (309)
                      ..+|.++      ++.+.....  .....+...  +..++ .++.++.+..+|..+
T Consensus       252 ~~~d~~t------G~~~w~~~~--~~~~~~~~~--~~~l~-~~~~~g~l~~~d~~t  296 (376)
T 3q7m_A          252 TALDLRS------GQIMWKREL--GSVNDFIVD--GNRIY-LVDQNDRVMALTIDG  296 (376)
T ss_dssp             EEEETTT------CCEEEEECC--CCEEEEEEE--TTEEE-EEETTCCEEEEETTT
T ss_pred             EEEECCC------CcEEeeccC--CCCCCceEE--CCEEE-EEcCCCeEEEEECCC
Confidence            9999998      777766652  234444443  44454 667789999999887

>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1

Probab=98.63  E-value=1.7e-06  Score=75.22  Aligned_cols=149  Identities=11%  Similarity=0.094  Sum_probs=86.0

Q ss_pred             CCEEEEecCCCcEEEEeCCccccccccCCccc-----c--ccCCCCceeecCCCC----CCCCcccCCCCCcCccccccc
Q 021657           21 EPYVLSGGKDKSVVLWSIQDHITSSATDPATA-----K--SAGSSGSIIKQSPKP----GDGNDKAADGPSVGPRGIYNG   89 (309)
Q Consensus        21 ~~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~-----~--~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~   89 (309)
                      +..++.++.|+.|..+|.+++...........     .  .+........+....    ..+.+..++..+++.+..+..
T Consensus       117 ~~~v~v~~~dg~l~alD~~tG~~~W~~~~~~~~~~~~~~~~P~v~~~~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~~  196 (668)
T 1kv9_A          117 GDKVYVGTLDGRLIALDAKTGKAIWSQQTTDPAKPYSITGAPRVVKGKVIIGNGGAEYGVRGFVSAYDADTGKLAWRFYT  196 (668)
T ss_dssp             BTEEEEECTTSEEEEEETTTCCEEEEEECSCTTSSCBCCSCCEEETTEEEECCBCTTTCCBCEEEEEETTTCCEEEEEES
T ss_pred             CCEEEEEcCCCEEEEEECCCCCEeeeeccCCCCCcceecCCCEEECCEEEEeCCCCCcCCCCEEEEEECCCCcEEEEecc
Confidence            45788888999999999998855443322100     0  000001111221111    245677777777666544421


Q ss_pred             -------------------------------ccCCeEEEEEecCCCcEEEEEcCCC-------------------eEEEE
Q 021657           90 -------------------------------HEDTVEDVTFCPSSAQEFCSVGDDS-------------------CLILW  119 (309)
Q Consensus        90 -------------------------------~~~~v~~~~~~~~~~~~l~s~~~dg-------------------~i~iw  119 (309)
                                                     +......+++.|.+ .+++.+..++                   .|..+
T Consensus       197 ~~~~p~~~~~~~~~~~~~~~~~g~~~w~~~~gg~~w~~~a~d~~~-~~vy~~~~~g~~w~~~~~~~~~gd~l~~~~v~Al  275 (668)
T 1kv9_A          197 VPGDPALPYEHPELREAAKTWQGDQYWKLGGGGTVWDSMAYDPEL-DLLYVGTGNGSPWNREVRSPGGGDNLYLSSILAI  275 (668)
T ss_dssp             SCCCTTSCCSSHHHHHHHTTCCSSCHHHHCEECCCCSCEEEETTT-TEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEE
T ss_pred             cCCCCCccccccccccccccCCccceeeeCCCCccccceEEcCCC-CEEEEeCCCCCccccCCCCCCCCCceeeeeEEEE
Confidence                                           11112246788876 5677777665                   49999


Q ss_pred             EcCCCCcceEEEeec--cC-------CceeEEEeccCCCC---eEEEEcCCCcEEEEecCCCCCCCCCCcee
Q 021657          120 DARVGTSPVIKVEKA--HD-------ADLHCVDWNPLDDN---LILTGSADNSVRMFDRRNLTSNGVGSPIN  179 (309)
Q Consensus       120 d~~~~~~~~~~~~~~--~~-------~~v~~~~~~~~~~~---~l~~~~~dg~i~i~d~~~~~~~~~~~~~~  179 (309)
                      |..+++  ..-.+..  |.       .+.....+.. +++   .++.++.+|.++++|.++      ++.+.
T Consensus       276 D~~tG~--~~W~~~~~~~~~wd~~~~~~~~~~d~~~-~G~~~~~v~~~~~~G~l~~lD~~t------G~~l~  338 (668)
T 1kv9_A          276 RPDTGK--LAWHYQVTPGDSWDFTATQQITLAELNI-DGKPRKVLMQAPKNGFFYVLDRTN------GKLIS  338 (668)
T ss_dssp             CTTTCC--EEEEEESSTTCCSCCCCCSCEEEEEEEE-TTEEEEEEEECCTTSEEEEEETTT------CCEEE
T ss_pred             cCCCCc--eeeEeecCCCccccccCCCCcEEEEecc-CCcEEEEEEEECCCCEEEEEECCC------CCEec
Confidence            999998  3333322  22       2222222223 454   688899999999999998      77663

>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}

Probab=98.60  E-value=6.6e-06  Score=61.71  Aligned_cols=150  Identities=7%  Similarity=-0.008  Sum_probs=96.0

Q ss_pred             eEEEEEecCCCcEEEEEcCCCeEEEEEcCCCCcceEEEeeccCCceeEEEeccCCCCeEEEEcCCCcEEEEecCCCCCCC
Q 021657           94 VEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNG  173 (309)
Q Consensus        94 v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~  173 (309)
                      ...+.|+. + .++.+.+.+|.|+++|+.+++.  .........---.+++.  .+.++++.-.++.+.+||..+     
T Consensus        57 tqGL~~~~-~-~Ly~stG~~g~v~~iD~~Tgkv--~~~~l~~~~FgeGit~~--g~~Ly~ltw~~~~v~V~D~~T-----  125 (268)
T 3nok_A           57 TQGLVFHQ-G-HFFESTGHQGTLRQLSLESAQP--VWMERLGNIFAEGLASD--GERLYQLTWTEGLLFTWSGMP-----  125 (268)
T ss_dssp             EEEEEEET-T-EEEEEETTTTEEEECCSSCSSC--SEEEECTTCCEEEEEEC--SSCEEEEESSSCEEEEEETTT-----
T ss_pred             cceEEEEC-C-EEEEEcCCCCEEEEEECCCCcE--EeEECCCCcceeEEEEe--CCEEEEEEccCCEEEEEECCc-----
Confidence            46888874 4 8888999999999999999984  33332211112335554  345666666789999999999     


Q ss_pred             CCCceeeeccCCCCeeEEEEecCCCcEEEEecCCCcEEEEeCCcccccccCCCCCcCCCCceeeeecCCC---cceeeEE
Q 021657          174 VGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHR---DKVVDFH  250 (309)
Q Consensus       174 ~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~v~~~~  250 (309)
                       .+.+.++......   ..+++++..|+++- .++.|.++|..+......            + ....+.   ..++.+.
T Consensus       126 -l~~~~ti~~~~eG---wGLt~Dg~~L~vSd-Gs~~l~~iDp~T~~v~~~------------I-~V~~~g~~v~~lNeLe  187 (268)
T 3nok_A          126 -PQRERTTRYSGEG---WGLCYWNGKLVRSD-GGTMLTFHEPDGFALVGA------------V-QVKLRGQPVELINELE  187 (268)
T ss_dssp             -TEEEEEEECSSCC---CCEEEETTEEEEEC-SSSEEEEECTTTCCEEEE------------E-ECEETTEECCCEEEEE
T ss_pred             -CcEEEEEeCCCce---eEEecCCCEEEEEC-CCCEEEEEcCCCCeEEEE------------E-EeCCCCcccccccccE
Confidence             8888888753322   33446778777554 588999999887322111            1 111122   2346677


Q ss_pred             EccCCCeEEEEecCCCCCCCCCCeEEEEEcc
Q 021657          251 WNASDPWTVVSVSDDCDSTGGGGTLQIWRMS  281 (309)
Q Consensus       251 ~~~~~~~~~~s~s~d~~s~~~dg~v~vw~~~  281 (309)
                      |. ++ .+++..-.+       +.|.+-|..
T Consensus       188 ~~-dG-~lyanvw~s-------~~I~vIDp~  209 (268)
T 3nok_A          188 CA-NG-VIYANIWHS-------SDVLEIDPA  209 (268)
T ss_dssp             EE-TT-EEEEEETTC-------SEEEEECTT
T ss_pred             Ee-CC-EEEEEECCC-------CeEEEEeCC
Confidence            77 34 567655444       678888877

>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A

Probab=98.60  E-value=6.2e-06  Score=66.58  Aligned_cols=176  Identities=10%  Similarity=0.002  Sum_probs=100.6

Q ss_pred             CCEEEEecCCCcEEEEeCCccccccccCCcccc-------ccCCCCceeecCCCCCCCCcccCCCCCcCcccccccccC-
Q 021657           21 EPYVLSGGKDKSVVLWSIQDHITSSATDPATAK-------SAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHED-   92 (309)
Q Consensus        21 ~~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-   92 (309)
                      +..++.++.++.|..+|.+++............       .+........  .+..++.+..++..+++.+........ 
T Consensus       143 ~~~v~v~~~~g~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~v~--~g~~~g~l~~~d~~tG~~~w~~~~~~~~  220 (376)
T 3q7m_A          143 DGLVLIHTSNGQLQALNEADGAVKWTVNLDMPSLSLRGESAPTTAFGAAV--VGGDNGRVSAVLMEQGQMIWQQRISQAT  220 (376)
T ss_dssp             TTEEEEECTTSEEEEEETTTCCEEEEEECCC-----CCCCCCEEETTEEE--ECCTTTEEEEEETTTCCEEEEEECCC--
T ss_pred             CCEEEEEcCCCeEEEEECCCCcEEEEEeCCCCceeecCCCCcEEECCEEE--EEcCCCEEEEEECCCCcEEEEEecccCC
Confidence            346788888999999999887544332221110       0000011111  123345566666666665544332110 


Q ss_pred             ------C---e-EEEEEecCCCcEEEEEcCCCeEEEEEcCCCCcceEEEeeccCCceeEEEeccCCCCeEEEEcCCCcEE
Q 021657           93 ------T---V-EDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVR  162 (309)
Q Consensus        93 ------~---v-~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~  162 (309)
                            .   + ..... . + ..++.++.++.+..+|..+++  ......  ......+..   .+..++.++.++.+.
T Consensus       221 ~~~~~~~~~~~~~~p~~-~-~-~~v~~~~~~g~l~~~d~~tG~--~~w~~~--~~~~~~~~~---~~~~l~~~~~~g~l~  290 (376)
T 3q7m_A          221 GSTEIDRLSDVDTTPVV-V-N-GVVFALAYNGNLTALDLRSGQ--IMWKRE--LGSVNDFIV---DGNRIYLVDQNDRVM  290 (376)
T ss_dssp             ---------CCCCCCEE-E-T-TEEEEECTTSCEEEEETTTCC--EEEEEC--CCCEEEEEE---ETTEEEEEETTCCEE
T ss_pred             CCcccccccccCCCcEE-E-C-CEEEEEecCcEEEEEECCCCc--EEeecc--CCCCCCceE---ECCEEEEEcCCCeEE
Confidence                  0   1 01111 1 2 357777789999999998888  333322  223444444   456777778899999


Q ss_pred             EEecCCCCCCCCCCceeeeccC-CCCeeEEEEecCCCcEEEEecCCCcEEEEeCCc
Q 021657          163 MFDRRNLTSNGVGSPINKFEGH-SAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEK  217 (309)
Q Consensus       163 i~d~~~~~~~~~~~~~~~~~~~-~~~v~~~~~~~~~~~l~~~~~~dg~i~iwd~~~  217 (309)
                      .+|..+      ++.+...... ...+......  +..+ ..++.+|.+.++|.++
T Consensus       291 ~~d~~t------G~~~w~~~~~~~~~~~~~~~~--~~~l-~v~~~~g~l~~~d~~t  337 (376)
T 3q7m_A          291 ALTIDG------GVTLWTQSDLLHRLLTSPVLY--NGNL-VVGDSEGYLHWINVED  337 (376)
T ss_dssp             EEETTT------CCEEEEECTTTTSCCCCCEEE--TTEE-EEECTTSEEEEEETTT
T ss_pred             EEECCC------CcEEEeecccCCCcccCCEEE--CCEE-EEEeCCCeEEEEECCC
Confidence            999998      7777666522 2223333332  3334 4788899999999887

>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A

Probab=98.57  E-value=9.2e-07  Score=77.17  Aligned_cols=157  Identities=3%  Similarity=-0.094  Sum_probs=93.6

Q ss_pred             eEEEEEecCCCcEEEEEcCCCeEEEEEcCCCCcceEEEeeccCCceeEEEeccCCCCeEEEEcCC-CcEEEEecCCCCCC
Q 021657           94 VEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSAD-NSVRMFDRRNLTSN  172 (309)
Q Consensus        94 v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d-g~i~i~d~~~~~~~  172 (309)
                      ...|++.+.++.++++-...+.|.+.++....  ..............++++|..+.++++-... +.|..+++..    
T Consensus       455 P~glavD~~~g~LY~tD~~~~~I~v~d~dg~~--~~~l~~~~~~~P~giavDp~~g~ly~td~~~~~~I~~~~~dG----  528 (699)
T 1n7d_A          455 PDGLAVDWIHSNIYWTDSVLGTVSVADTKGVK--RKTLFREQGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNG----  528 (699)
T ss_dssp             CCCEECCCSSSBCEECCTTTSCEEEEBSSSCC--EEEECCCSSCCCCCEECCSSSSCCEECCCSSSCCEEBCCSSS----
T ss_pred             cceEEEEeeCCcEEEEeccCCeEEEEecCCCc--eEEEEeCCCCCcceEEEccCCCcEEEcccCCCCeEEEEeCCC----
Confidence            45677776554667766677889999986544  2333322334568899998344444443333 6788877764    


Q ss_pred             CCCCceeee-ccCCCCeeEEEEecCCCcEEEEecCCCcEEEEeCCcccccccCCCCCcCCCCceeeeecCCCcceeeEEE
Q 021657          173 GVGSPINKF-EGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKVVDFHW  251 (309)
Q Consensus       173 ~~~~~~~~~-~~~~~~v~~~~~~~~~~~l~~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~  251 (309)
                         .....+ ...-...+.|+|+|++..|+++-...+.|..+++.....             ..+............|++
T Consensus       529 ---~~~~~l~~~~l~~PnGlavd~~~~~LY~aD~~~~~I~~~d~dG~~~-------------~~~~~~~~~~~~P~glav  592 (699)
T 1n7d_A          529 ---VDIYSLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNR-------------KTILEDEKRLAHPFSLAV  592 (699)
T ss_dssp             ---CCCCEESCSSCSSCCCEEECTTTCCEEEEETTTTEEEEECSSSSCC-------------EEECCCSSSCSSCCCCEE
T ss_pred             ---CCeeEEEeCCCCCccEEEEeccCCEEEEEecCCCeEEEEccCCCce-------------EEEEecCCcCCCceEeEE
Confidence               222222 222345678999998887888888888999999864111             111111111223345555


Q ss_pred             ccCCCeEEEEecCCCCCCCCCCeEEEEEcc
Q 021657          252 NASDPWTVVSVSDDCDSTGGGGTLQIWRMS  281 (309)
Q Consensus       252 ~~~~~~~~~s~s~d~~s~~~dg~v~vw~~~  281 (309)
                      ..  ..++++....       +.|..++..
T Consensus       593 d~--~~lywtd~~~-------~~V~~~d~~  613 (699)
T 1n7d_A          593 FE--DKVFWTDIIN-------EAIFSANRL  613 (699)
T ss_dssp             ET--TEEEEECSTT-------TCEEEEETT
T ss_pred             EC--CEEEEEeCCC-------CeEEEEEcc
Confidence            43  4666654433       788888865

>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L

Probab=98.56  E-value=0.00018  Score=58.56  Aligned_cols=164  Identities=9%  Similarity=-0.053  Sum_probs=106.4

Q ss_pred             ccCCeEEEEEecCCCcEEEEEcCCCeEEEEEcCCCC--cceEEEeeccCCceeEEEeccCCCCeEEEEcCCCcEEEEecC
Q 021657           90 HEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGT--SPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRR  167 (309)
Q Consensus        90 ~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~--~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~  167 (309)
                      ....+..++|++.++.++.+-...+.|..+++....  ................+++++..++++++-...+.|.+.++.
T Consensus       110 ~~~~~~~l~~d~~~~~lywsD~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~p~glavD~~~~~lY~~d~~~~~I~~~~~~  189 (400)
T 3p5b_L          110 NLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTK  189 (400)
T ss_dssp             SCSCEEEEEEETTTTEEEEEETTTTEEEEEEC------CCCEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEECTT
T ss_pred             ccCcceEEeeeeccCceEEEecCCCeEEEEEcccCCCCCcceEEEeCCCCCcccEEEEecCCceEEEECCCCeEEEEeCC
Confidence            345678999998765777777778899999986521  112333333445678899987456666776778899999987


Q ss_pred             CCCCCCCCCceeeeccCCCCeeEEEEecCCCcEEEEecC-CCcEEEEeCCcccccccCCCCCcCCCCceeeeecCCCcce
Q 021657          168 NLTSNGVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAE-DGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKV  246 (309)
Q Consensus       168 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~-dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v  246 (309)
                      .      ......+...-.....|++.|.+.+|+.+-.. .+.|...++.....               .......-...
T Consensus       190 g------~~~~~l~~~~~~~P~~iavdp~~g~ly~td~~~~~~I~~~~~dG~~~---------------~~~~~~~l~~P  248 (400)
T 3p5b_L          190 G------VKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDI---------------YSLVTENIQWP  248 (400)
T ss_dssp             T------CSEEEEEECSSCCEEEEEEETTTTEEEEEECSSSCCEEEEETTSCSC---------------EEEECSSCSCE
T ss_pred             C------CceEEEEeCCCCCcceEEEecccCeEEEEeCCCCCEEEEEeCCCCcc---------------EEEEECCCCce
Confidence            5      33333333334457899999987777766533 47788888765111               01111223457


Q ss_pred             eeEEEccCCCeEEEEecCCCCCCCCCCeEEEEEcc
Q 021657          247 VDFHWNASDPWTVVSVSDDCDSTGGGGTLQIWRMS  281 (309)
Q Consensus       247 ~~~~~~~~~~~~~~s~s~d~~s~~~dg~v~vw~~~  281 (309)
                      +.|+++|++..|+++-+..       +.|..+|+.
T Consensus       249 ~glavd~~~~~lY~aD~~~-------~~I~~~d~d  276 (400)
T 3p5b_L          249 NGITLDLLSGRLYWVDSKL-------HSISSIDVN  276 (400)
T ss_dssp             EEEEEETTTTEEEEEETTT-------TEEEEEETT
T ss_pred             EEEEEEeCCCEEEEEECCC-------CEEEEEeCC
Confidence            8899998888888765444       688888876

>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}

Probab=98.56  E-value=2.6e-05  Score=57.93  Aligned_cols=110  Identities=14%  Similarity=0.172  Sum_probs=76.3

Q ss_pred             CCeEEEEEecCCCcEEEEEcCCC--eEEEEEcCCCCcceEEEeeccCCcee--EEEeccCCCCeEEEEcCCCcEEEEecC
Q 021657           92 DTVEDVTFCPSSAQEFCSVGDDS--CLILWDARVGTSPVIKVEKAHDADLH--CVDWNPLDDNLILTGSADNSVRMFDRR  167 (309)
Q Consensus        92 ~~v~~~~~~~~~~~~l~s~~~dg--~i~iwd~~~~~~~~~~~~~~~~~~v~--~~~~~~~~~~~l~~~~~dg~i~i~d~~  167 (309)
                      .-...+.|++ + .++.+.+.+|  .|+.+|+.+++  ........ ....  .++..  ++..+...-.++.+.+||..
T Consensus        21 ~ftqGL~~~~-~-~LyestG~~g~S~v~~vD~~tgk--v~~~~~l~-~~~fgeGi~~~--~~~ly~ltw~~~~v~v~D~~   93 (243)
T 3mbr_X           21 AFTEGLFYLR-G-HLYESTGETGRSSVRKVDLETGR--ILQRAEVP-PPYFGAGIVAW--RDRLIQLTWRNHEGFVYDLA   93 (243)
T ss_dssp             CCEEEEEEET-T-EEEEEECCTTSCEEEEEETTTCC--EEEEEECC-TTCCEEEEEEE--TTEEEEEESSSSEEEEEETT
T ss_pred             cccccEEEEC-C-EEEEECCCCCCceEEEEECCCCC--EEEEEeCC-CCcceeEEEEe--CCEEEEEEeeCCEEEEEECC
Confidence            3467899987 4 7777777764  89999999998  44444322 2222  34443  35556666678999999999


Q ss_pred             CCCCCCCCCceeeeccCCCCeeEEEEecCCCcEEEEecCCCcEEEEeCCcc
Q 021657          168 NLTSNGVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKV  218 (309)
Q Consensus       168 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~dg~i~iwd~~~~  218 (309)
                      +      .+.+.++......   ..+.+++..|+++- .++.|.++|..+.
T Consensus        94 t------l~~~~ti~~~~~G---wglt~dg~~L~vSd-gs~~l~~iDp~t~  134 (243)
T 3mbr_X           94 T------LTPRARFRYPGEG---WALTSDDSHLYMSD-GTAVIRKLDPDTL  134 (243)
T ss_dssp             T------TEEEEEEECSSCC---CEEEECSSCEEEEC-SSSEEEEECTTTC
T ss_pred             c------CcEEEEEeCCCCc---eEEeeCCCEEEEEC-CCCeEEEEeCCCC
Confidence            9      8888888754322   34456777777554 5889999998873

>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B

Probab=98.50  E-value=0.0002  Score=56.21  Aligned_cols=160  Identities=9%  Similarity=-0.037  Sum_probs=104.7

Q ss_pred             CeEEEEEecCCCcEEEEEcCCCeEEEEEcCCCCcceEEEeeccCCceeEEEeccCCCCeEEEEcCCCcEEEEecCCCCCC
Q 021657           93 TVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSN  172 (309)
Q Consensus        93 ~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~  172 (309)
                      ....+.|.+.++.++.+-...+.|..+++...... .......-.....+++.+..++++++-...+.|.++++..    
T Consensus        36 ~~~~ld~d~~~~~lyw~D~~~~~I~r~~~~g~~~~-~~~~~~~l~~p~glavd~~~g~ly~~d~~~~~I~~~~~dG----  110 (318)
T 3sov_A           36 DAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTESV-QNVVVSGLLSPDGLACDWLGEKLYWTDSETNRIEVSNLDG----  110 (318)
T ss_dssp             EEEEEEEEGGGTEEEEEETTTTEEEEEETTSSSCC-CEEEEECCSCCCEEEEETTTTEEEEEETTTTEEEEEETTS----
T ss_pred             ccEEEEEEeCCCEEEEEECCCCcEEEEEccCCCce-EEEEcCCCCCccEEEEEcCCCeEEEEECCCCEEEEEECCC----
Confidence            46789999876577778778899999998765321 1122222345678888874566667766778999999875    


Q ss_pred             CCCCceeeeccCCCCeeEEEEecCCCcEEEEec-CCCcEEEEeCCcccccccCCCCCcCCCCceeeeecCCCcceeeEEE
Q 021657          173 GVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSA-EDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKVVDFHW  251 (309)
Q Consensus       173 ~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~  251 (309)
                        ......+.........+++.|.+.+|+.+-. ..+.|...++.....             ..+  ....-...+.+++
T Consensus       111 --~~~~~l~~~~~~~P~giavdp~~g~ly~td~~~~~~I~r~~~dG~~~-------------~~~--~~~~l~~Pnglav  173 (318)
T 3sov_A          111 --SLRKVLFWQELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMDGSSR-------------FII--INSEIYWPNGLTL  173 (318)
T ss_dssp             --CSCEEEECSSCSSEEEEEEEGGGTEEEEEECSSSCEEEEEETTSCSC-------------EEE--ECSSCSCEEEEEE
T ss_pred             --CcEEEEEeCCCCCccEEEEeCCCCEEEEEecCCCCEEEEEEcCCCCe-------------EEE--EECCCCCccEEEE
Confidence              2222222233456789999998776776653 357788887764111             011  1112234689999


Q ss_pred             ccCCCeEEEEecCCCCCCCCCCeEEEEEcc
Q 021657          252 NASDPWTVVSVSDDCDSTGGGGTLQIWRMS  281 (309)
Q Consensus       252 ~~~~~~~~~s~s~d~~s~~~dg~v~vw~~~  281 (309)
                      +|++..|+.+-+..       +.|..+++.
T Consensus       174 d~~~~~lY~aD~~~-------~~I~~~d~d  196 (318)
T 3sov_A          174 DYEEQKLYWADAKL-------NFIHKSNLD  196 (318)
T ss_dssp             ETTTTEEEEEETTT-------TEEEEEETT
T ss_pred             eccCCEEEEEECCC-------CEEEEEcCC
Confidence            99888888765544       788888886

>3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli}

Probab=98.43  E-value=0.00024  Score=53.53  Aligned_cols=197  Identities=11%  Similarity=0.091  Sum_probs=119.2

Q ss_pred             ccCCCCCcceEEEEECCCCCEEE-EecCCCcEEEEeCCccccccccCCccccccCCCCceeecCCCCCCCCcccCCCCCc
Q 021657            3 ILTGHQDNAEFALAMCPTEPYVL-SGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSV   81 (309)
Q Consensus         3 ~l~~H~~~~V~~~~~~~~~~~l~-t~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (309)
                      .|.|=.+ .+..++|+|++..|+ +...++.|...|.+.. .....                                  
T Consensus        21 ~l~g~~~-~lSGla~~~~~~~L~aV~d~~~~I~~ld~~g~-v~~~i----------------------------------   64 (255)
T 3qqz_A           21 EIAGITN-NISSLTWSAQSNTLFSTINKPAAIVEMTTNGD-LIRTI----------------------------------   64 (255)
T ss_dssp             ECTTCCS-CEEEEEEETTTTEEEEEEETTEEEEEEETTCC-EEEEE----------------------------------
T ss_pred             ECCCccc-CcceeEEeCCCCEEEEEECCCCeEEEEeCCCC-EEEEE----------------------------------
Confidence            4556556 689999999866554 5677888888887621 11000                                  


Q ss_pred             CcccccccccCCeEEEEEecCCCcEEEEEcCCCeEEEEEcCCCCc-ceEEEe------eccCCceeEEEeccCCCCeEEE
Q 021657           82 GPRGIYNGHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTS-PVIKVE------KAHDADLHCVDWNPLDDNLILT  154 (309)
Q Consensus        82 ~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~-~~~~~~------~~~~~~v~~~~~~~~~~~~l~~  154 (309)
                          .+.+ ......|++.+++ .++++.-.++.+.++++..... ......      .........++|+| .++.|++
T Consensus        65 ----~l~g-~~D~EGIa~~~~g-~~~vs~E~~~~l~~~~v~~~~~i~~~~~~~~~~~~~~~N~g~EGLA~d~-~~~~L~v  137 (255)
T 3qqz_A           65 ----PLDF-VKDLETIEYIGDN-QFVISDERDYAIYVISLTPNSEVKILKKIKIPLQESPTNCGFEGLAYSR-QDHTFWF  137 (255)
T ss_dssp             ----ECSS-CSSEEEEEECSTT-EEEEEETTTTEEEEEEECTTCCEEEEEEEECCCSSCCCSSCCEEEEEET-TTTEEEE
T ss_pred             ----ecCC-CCChHHeEEeCCC-EEEEEECCCCcEEEEEcCCCCeeeeeeeeccccccccccCCcceEEEeC-CCCEEEE
Confidence                0111 2457788998877 6666666778899998865542 111111      12334568999999 6766666


Q ss_pred             EcCCCcEEEEecCCCCCCCCCCceeeec-------cCCCCeeEEEEecCCCcEEEEecCCCcEEEEeCCcccccccCCCC
Q 021657          155 GSADNSVRMFDRRNLTSNGVGSPINKFE-------GHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPR  227 (309)
Q Consensus       155 ~~~dg~i~i~d~~~~~~~~~~~~~~~~~-------~~~~~v~~~~~~~~~~~l~~~~~~dg~i~iwd~~~~~~~~~~~~~  227 (309)
                      +.......+|.++....   ...+..+.       .....+.+++++|...++++....+..+.++|....  ...    
T Consensus       138 a~E~~p~~i~~~~g~~~---~~~l~i~~~~~~~~~~~~~d~S~l~~dp~tg~lliLS~~s~~L~~~d~~g~--~~~----  208 (255)
T 3qqz_A          138 FKEKNPIEVYKVNGLLS---SNELHISKDKALQRQFTLDDVSGAEFNQQKNTLLVLSHESRALQEVTLVGE--VIG----  208 (255)
T ss_dssp             EEESSSEEEEEEESTTC---SSCCEEEECHHHHHTCCSSCCCEEEEETTTTEEEEEETTTTEEEEECTTCC--EEE----
T ss_pred             EECcCCceEEEEccccc---CCceeeecchhhccccccCCceeEEEcCCCCeEEEEECCCCeEEEEcCCCC--EEE----
Confidence            66555555555542100   11111111       123457899999988888888888899999997752  111    


Q ss_pred             CcCCCCceeeeec-CC------CcceeeEEEccCCCeEE
Q 021657          228 TTNYPAGLFFQHA-GH------RDKVVDFHWNASDPWTV  259 (309)
Q Consensus       228 ~~~~~~~~~~~~~-~~------~~~v~~~~~~~~~~~~~  259 (309)
                              ...+. +.      -..-..|+|.++|..++
T Consensus       209 --------~~~L~~g~~~l~~~~~qpEGia~d~~G~lyI  239 (255)
T 3qqz_A          209 --------EMSLTKGSRGLSHNIKQAEGVAMDASGNIYI  239 (255)
T ss_dssp             --------EEECSTTGGGCSSCCCSEEEEEECTTCCEEE
T ss_pred             --------EEEcCCccCCcccccCCCCeeEECCCCCEEE
Confidence                    11222 11      12458899999887433

>3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli}

Probab=98.37  E-value=0.00034  Score=52.69  Aligned_cols=172  Identities=11%  Similarity=0.176  Sum_probs=107.7

Q ss_pred             ccccccCCeEEEEEecCCCcEEEEEcCCCeEEEEEcCCCCcceEEEee-ccCCceeEEEeccCCCCeEEEEcCCCcEEEE
Q 021657           86 IYNGHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPVIKVEK-AHDADLHCVDWNPLDDNLILTGSADNSVRMF  164 (309)
Q Consensus        86 ~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~  164 (309)
                      .+.+-...+..++|+|++..++++...++.|...|.. ++  ....+. ......-.+++.+ ++.++++.-.++.+.++
T Consensus        21 ~l~g~~~~lSGla~~~~~~~L~aV~d~~~~I~~ld~~-g~--v~~~i~l~g~~D~EGIa~~~-~g~~~vs~E~~~~l~~~   96 (255)
T 3qqz_A           21 EIAGITNNISSLTWSAQSNTLFSTINKPAAIVEMTTN-GD--LIRTIPLDFVKDLETIEYIG-DNQFVISDERDYAIYVI   96 (255)
T ss_dssp             ECTTCCSCEEEEEEETTTTEEEEEEETTEEEEEEETT-CC--EEEEEECSSCSSEEEEEECS-TTEEEEEETTTTEEEEE
T ss_pred             ECCCcccCcceeEEeCCCCEEEEEECCCCeEEEEeCC-CC--EEEEEecCCCCChHHeEEeC-CCEEEEEECCCCcEEEE
Confidence            3445556799999999876777778889999999987 66  444432 2235678889988 77777776677899999


Q ss_pred             ecCCCCCCCCCCceeeec------cCCCCeeEEEEecCCCcEEEEecCCCcEEEEeCCcccccccCCCCCcCCCCceee-
Q 021657          165 DRRNLTSNGVGSPINKFE------GHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFF-  237 (309)
Q Consensus       165 d~~~~~~~~~~~~~~~~~------~~~~~v~~~~~~~~~~~l~~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~-  237 (309)
                      ++.....   ...+....      ..+.....|+|+|.+..|+++.-.+ ...+|.++.  .....       ...... 
T Consensus        97 ~v~~~~~---i~~~~~~~~~~~~~~~N~g~EGLA~d~~~~~L~va~E~~-p~~i~~~~g--~~~~~-------~l~i~~~  163 (255)
T 3qqz_A           97 SLTPNSE---VKILKKIKIPLQESPTNCGFEGLAYSRQDHTFWFFKEKN-PIEVYKVNG--LLSSN-------ELHISKD  163 (255)
T ss_dssp             EECTTCC---EEEEEEEECCCSSCCCSSCCEEEEEETTTTEEEEEEESS-SEEEEEEES--TTCSS-------CCEEEEC
T ss_pred             EcCCCCe---eeeeeeeccccccccccCCcceEEEeCCCCEEEEEECcC-CceEEEEcc--cccCC-------ceeeecc
Confidence            8876310   01112221      1244578999999998777554444 445555541  00000       001110 


Q ss_pred             ---eecCCCcceeeEEEccCCCeEEEEecCCCCCCCCCCeEEEEEcc
Q 021657          238 ---QHAGHRDKVVDFHWNASDPWTVVSVSDDCDSTGGGGTLQIWRMS  281 (309)
Q Consensus       238 ---~~~~~~~~v~~~~~~~~~~~~~~s~s~d~~s~~~dg~v~vw~~~  281 (309)
                         ....+...+.+++++|....+++.....       ..|.++|..
T Consensus       164 ~~~~~~~~~~d~S~l~~dp~tg~lliLS~~s-------~~L~~~d~~  203 (255)
T 3qqz_A          164 KALQRQFTLDDVSGAEFNQQKNTLLVLSHES-------RALQEVTLV  203 (255)
T ss_dssp             HHHHHTCCSSCCCEEEEETTTTEEEEEETTT-------TEEEEECTT
T ss_pred             hhhccccccCCceeEEEcCCCCeEEEEECCC-------CeEEEEcCC
Confidence               0011234578999999888777765544       777777766

>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}

Probab=98.35  E-value=0.00077  Score=59.56  Aligned_cols=163  Identities=8%  Similarity=-0.058  Sum_probs=104.3

Q ss_pred             cCCeEEEEEecCCCcEEEEEcCCCeEEEEEcCCCCc--ceEEEeeccCCceeEEEeccCCCCeEEEEcCCCcEEEEecCC
Q 021657           91 EDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTS--PVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRN  168 (309)
Q Consensus        91 ~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~--~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~  168 (309)
                      ...+..|+|.+.++.++++-...+.|+.+++.....  .....+.........|++++..++++++-...+.|.+.++..
T Consensus       423 ~~~~~gl~~d~~~~~lY~sD~~~~~I~~~~l~g~~~~~~~~~vi~~~l~~P~GLAvD~~~~~LY~tD~~~~~I~v~~ldG  502 (791)
T 3m0c_C          423 LRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKG  502 (791)
T ss_dssp             CSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTS
T ss_pred             CCceEEEeecccCCeeEEeeccceeEEEEeccCCCCCcceeEEEecCCCCcceeeeeecCCcEEEEecCCCeEEEEeCCC
Confidence            456788999986657777877888999999865311  123333334456778999884456777777788999999875


Q ss_pred             CCCCCCCCceeeeccCCCCeeEEEEecCCCcEEEEecCC-CcEEEEeCCcccccccCCCCCcCCCCceeeeecCCCccee
Q 021657          169 LTSNGVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAED-GLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKVV  247 (309)
Q Consensus       169 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~d-g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~  247 (309)
                            ......+...-.....|++.|.+.+|+++-..+ +.|...++.....               .......-....
T Consensus       503 ------~~~~~l~~~~l~~P~gIaVDp~~g~LYwtD~g~~~~I~~~~~dG~~~---------------~~lv~~~l~~P~  561 (791)
T 3m0c_C          503 ------VKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDI---------------YSLVTENIQWPN  561 (791)
T ss_dssp             ------SSEEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCCE---------------EEEECSSCSCEE
T ss_pred             ------CeEEEEEeCCCCCcceEEEecCCCCEEEecCCCCCeEEEEecCCCce---------------EEEEeCCCCCce
Confidence                  332222233344688999999877777665433 7788888765211               111122234678


Q ss_pred             eEEEccCCCeEEEEecCCCCCCCCCCeEEEEEcc
Q 021657          248 DFHWNASDPWTVVSVSDDCDSTGGGGTLQIWRMS  281 (309)
Q Consensus       248 ~~~~~~~~~~~~~s~s~d~~s~~~dg~v~vw~~~  281 (309)
                      .|++++.+..|+++-...       +.|...++.
T Consensus       562 GLavD~~~~~LYwaD~~~-------~~I~~~d~d  588 (791)
T 3m0c_C          562 GITLDLLSGRLYWVDSKL-------HSISSIDVN  588 (791)
T ss_dssp             EEEEETTTTEEEEEETTT-------TEEEEEETT
T ss_pred             EEEEecCCCeEEEEeCCC-------CcEEEEecC
Confidence            889988777777764433       677777775

>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A*

Probab=98.35  E-value=0.00047  Score=59.33  Aligned_cols=117  Identities=3%  Similarity=-0.083  Sum_probs=80.0

Q ss_pred             CCeEEEEEecCCCcEEEEEcCCCeEEEEEcCCCCcceEEEeeccCCceeEEEeccCCCCeEEEEc-CCCcEEEEecCCCC
Q 021657           92 DTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGS-ADNSVRMFDRRNLT  170 (309)
Q Consensus        92 ~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~-~dg~i~i~d~~~~~  170 (309)
                      .....+++.+.+++++++-...+.|.+.++....  ........-.....|+++|..+.++++-- ..+.|...++..  
T Consensus        84 ~~P~GlAvD~~~~~ly~~d~~~~~I~v~~~dG~~--~~~l~~~~l~~P~~Iavdp~~g~ly~tD~g~~~~I~r~~~dG--  159 (619)
T 3s94_A           84 LSPDGLACDWLGEKLYWTDSETNRIEVSNLDGSL--RKVLFWQELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMDG--  159 (619)
T ss_dssp             SCEEEEEEETTTTEEEEEETTTTEEEEEETTSCS--CEEEECSSCSCCCCEEEETTTTEEEEEECSSSCEEEEEETTS--
T ss_pred             CCcCeEEEEecCCEEEEEeCCCCEEEEEECCCCC--EEEEEeCCCCCCceEEEecCCCeEEEeccCCCCEEEEEECCC--
Confidence            4578999998765778887888999999987544  22223234456789999993344445432 245677777653  


Q ss_pred             CCCCCCceeee-ccCCCCeeEEEEecCCCcEEEEecCCCcEEEEeCCc
Q 021657          171 SNGVGSPINKF-EGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEK  217 (309)
Q Consensus       171 ~~~~~~~~~~~-~~~~~~v~~~~~~~~~~~l~~~~~~dg~i~iwd~~~  217 (309)
                           .....+ ...-...+.|++++++..|+++-...+.|..+|+..
T Consensus       160 -----~~~~~l~~~~~~~P~Glald~~~~~LY~aD~~~~~I~~~~~dG  202 (619)
T 3s94_A          160 -----SSRFIIINSEIYWPNGLTLDYEEQKLYWADAKLNFIHKSNLDG  202 (619)
T ss_dssp             -----CSCEEEECSSCSSEEEEEEETTTTEEEEEETTTCCEEEESSSC
T ss_pred             -----CceEEEEeCCCCCCcEEEEEccCCEEEEEeCCCCeEEEecCCC
Confidence                 322223 223456789999998887888877888899998875

>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A*

Probab=98.35  E-value=0.00091  Score=57.66  Aligned_cols=157  Identities=7%  Similarity=-0.062  Sum_probs=102.8

Q ss_pred             eEEEEECCCCCE-EEEecCCCcEEEEeCCccccccccCCccccccCCCCceeecCCCCCCCCcccCCCCCcCcccccccc
Q 021657           12 EFALAMCPTEPY-VLSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGH   90 (309)
Q Consensus        12 V~~~~~~~~~~~-l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   90 (309)
                      +..|+|++.+.. +++-..++.|+.++++....                                        ...+...
T Consensus        39 ~~~l~~d~~~~~lywtD~~~~~I~r~~~~g~~~----------------------------------------~~v~~~g   78 (628)
T 4a0p_A           39 ASALDFDVTDNRIYWTDISLKTISRAFMNGSAL----------------------------------------EHVVEFG   78 (628)
T ss_dssp             EEEEEEETTTTEEEEEETTTTEEEEEETTSCSC----------------------------------------EEEECSS
T ss_pred             eEEEEEECCCCEEEEEECCCCeEEEEECCCCCc----------------------------------------EEEEeCC
Confidence            468999986544 45666778888888763210                                        0011111


Q ss_pred             cCCeEEEEEecCCCcEEEEEcCCCeEEEEEcCCCCcceEEEeeccCCceeEEEeccCCCCeEEEE-cCCCcEEEEecCCC
Q 021657           91 EDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTG-SADNSVRMFDRRNL  169 (309)
Q Consensus        91 ~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~-~~dg~i~i~d~~~~  169 (309)
                      ......+++.+.+++++++-...+.|.+.++....  ........-.....++++|..+.++++- +..+.|...++.. 
T Consensus        79 ~~~P~GlAvD~~~~~LY~tD~~~~~I~v~~~dG~~--~~~l~~~~l~~P~~iavdp~~G~lY~tD~g~~~~I~r~~~dG-  155 (628)
T 4a0p_A           79 LDYPEGMAVDWLGKNLYWADTGTNRIEVSKLDGQH--RQVLVWKDLDSPRALALDPAEGFMYWTEWGGKPKIDRAAMDG-  155 (628)
T ss_dssp             CSCCCEEEEETTTTEEEEEETTTTEEEEEETTSTT--CEEEECSSCCCEEEEEEETTTTEEEEEECSSSCEEEEEETTS-
T ss_pred             CCCcceEEEEeCCCEEEEEECCCCEEEEEecCCCc--EEEEEeCCCCCcccEEEccCCCeEEEeCCCCCCEEEEEeCCC-
Confidence            13456888887765777887788999999986544  2222223445678999998444444443 2256787787764 


Q ss_pred             CCCCCCCceeeeccCCCCeeEEEEecCCCcEEEEecCCCcEEEEeCCc
Q 021657          170 TSNGVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEK  217 (309)
Q Consensus       170 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~dg~i~iwd~~~  217 (309)
                            .....+...-...+.|++++++..|+++-...+.|..+|+..
T Consensus       156 ------~~~~~l~~~~~~P~GlalD~~~~~LY~aD~~~~~I~~~d~dG  197 (628)
T 4a0p_A          156 ------SERTTLVPNVGRANGLTIDYAKRRLYWTDLDTNLIESSNMLG  197 (628)
T ss_dssp             ------CSCEEEECSCSSEEEEEEETTTTEEEEEETTTTEEEEEETTS
T ss_pred             ------CceEEEECCCCCcceEEEccccCEEEEEECCCCEEEEEcCCC
Confidence                  223333334456789999998888888888889999999875

>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron}

Probab=98.32  E-value=0.0001  Score=60.60  Aligned_cols=157  Identities=11%  Similarity=0.146  Sum_probs=95.4

Q ss_pred             CeEEEEEec-CCCcEEEEEcCCCeEEEEEcCCCCcceEEEeeccCCceeEEEeccCCCCeEEEEcC-CC----cEEEEec
Q 021657           93 TVEDVTFCP-SSAQEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSA-DN----SVRMFDR  166 (309)
Q Consensus        93 ~v~~~~~~~-~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~-dg----~i~i~d~  166 (309)
                      ....++++| +++. |..+...+.|+.+|+..+.   +..+.........++|++ +++.|+++.. ++    .+.+++.
T Consensus       138 ~P~~lavdp~~~g~-Lyv~d~~~~I~~id~~~~~---v~~~~~~~~~P~~ia~d~-~G~~lyvad~~~~~~~~~v~~~~~  212 (430)
T 3tc9_A          138 GAVWLSFDPKNHNH-LYLVGEQHPTRLIDFEKEY---VSTVYSGLSKVRTICWTH-EADSMIITNDQNNNDRPNNYILTR  212 (430)
T ss_dssp             CCCEEEEETTEEEE-EEEEEBTEEEEEEETTTTE---EEEEECCCSCEEEEEECT-TSSEEEEEECCSCTTSEEEEEEEG
T ss_pred             CCCEEEECCCCCCe-EEEEeCCCcEEEEECCCCE---EEEEecCCCCcceEEEeC-CCCEEEEEeCCCCcccceEEEEeC
Confidence            457899997 3424 4444444889999987655   233333455688999999 8885555543 22    2444443


Q ss_pred             CCCCCCCCCCceeeeccCCCCeeEEEEecCCCcEEEEecCCCcEEEEeCCcccccccCCCCCcCCCCceeeeecCCCcce
Q 021657          167 RNLTSNGVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKV  246 (309)
Q Consensus       167 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v  246 (309)
                      ...     ......+.. ......++++|++.+|+++-..++.|..++.... ..            ..+.... .....
T Consensus       213 ~g~-----~~~~~~l~~-~~~p~giavdp~~g~lyv~d~~~~~V~~~~~~~~-~~------------~~~~~~~-~~~~P  272 (430)
T 3tc9_A          213 ESG-----FKVITELTK-GQNCNGAETHPINGELYFNSWNAGQVFRYDFTTQ-ET------------TPLFTIQ-DSGWE  272 (430)
T ss_dssp             GGT-----SCSEEEEEE-CSSCCCEEECTTTCCEEEEETTTTEEEEEETTTT-EE------------EEEEECS-SSSCC
T ss_pred             CCc-----eeeeeeecc-CCCceEEEEeCCCCEEEEEECCCCEEEEEECCCC-cE------------EEEEEcC-CCCcc
Confidence            321     111122322 2345678999944447777777889999998751 10            0111111 12346


Q ss_pred             eeEEEccCCCeEEEEecCCCCCCCCCCeEEEEEcc
Q 021657          247 VDFHWNASDPWTVVSVSDDCDSTGGGGTLQIWRMS  281 (309)
Q Consensus       247 ~~~~~~~~~~~~~~s~s~d~~s~~~dg~v~vw~~~  281 (309)
                      ..++|+|++.+++++-...       +.|..++..
T Consensus       273 ~gia~~pdG~~lyv~d~~~-------~~I~~~~~d  300 (430)
T 3tc9_A          273 FHIQFHPSGNYAYIVVVNQ-------HYILRSDYD  300 (430)
T ss_dssp             EEEEECTTSSEEEEEETTT-------TEEEEEEEE
T ss_pred             eeEEEcCCCCEEEEEECCC-------CEEEEEeCC
Confidence            7899999999777765554       789998876

>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron}

Probab=98.31  E-value=6.4e-05  Score=61.74  Aligned_cols=156  Identities=11%  Similarity=0.117  Sum_probs=96.6

Q ss_pred             EEEEECC-CCCEEEEecCCCcEEEEeCCccccccccCCccccccCCCCceeecCCCCCCCCcccCCCCCcCccccccccc
Q 021657           13 FALAMCP-TEPYVLSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHE   91 (309)
Q Consensus        13 ~~~~~~~-~~~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   91 (309)
                      ..|+++| ++..|..+...+.|+.+|++...                                         +..+....
T Consensus       140 ~~lavdp~~~g~Lyv~d~~~~I~~id~~~~~-----------------------------------------v~~~~~~~  178 (430)
T 3tc9_A          140 VWLSFDPKNHNHLYLVGEQHPTRLIDFEKEY-----------------------------------------VSTVYSGL  178 (430)
T ss_dssp             CEEEEETTEEEEEEEEEBTEEEEEEETTTTE-----------------------------------------EEEEECCC
T ss_pred             CEEEECCCCCCeEEEEeCCCcEEEEECCCCE-----------------------------------------EEEEecCC
Confidence            5889998 45555555544788888876421                                         11111233


Q ss_pred             CCeEEEEEecCCCcEEEEEcCCC----eEEEEEcCCCCcceEEEeeccCCceeEEEeccCCCCeEEEEcCCCcEEEEecC
Q 021657           92 DTVEDVTFCPSSAQEFCSVGDDS----CLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRR  167 (309)
Q Consensus        92 ~~v~~~~~~~~~~~~l~s~~~dg----~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~  167 (309)
                      .....++|++++..++++...++    .+...+. .+.......+. .......++++|.++.++++-..++.|..+|..
T Consensus       179 ~~P~~ia~d~~G~~lyvad~~~~~~~~~v~~~~~-~g~~~~~~~l~-~~~~p~giavdp~~g~lyv~d~~~~~V~~~~~~  256 (430)
T 3tc9_A          179 SKVRTICWTHEADSMIITNDQNNNDRPNNYILTR-ESGFKVITELT-KGQNCNGAETHPINGELYFNSWNAGQVFRYDFT  256 (430)
T ss_dssp             SCEEEEEECTTSSEEEEEECCSCTTSEEEEEEEG-GGTSCSEEEEE-ECSSCCCEEECTTTCCEEEEETTTTEEEEEETT
T ss_pred             CCcceEEEeCCCCEEEEEeCCCCcccceEEEEeC-CCceeeeeeec-cCCCceEEEEeCCCCEEEEEECCCCEEEEEECC
Confidence            45789999999843555554332    3444443 33321112222 234467888999556666666678899999987


Q ss_pred             CCCCCCCCCceeeec-cCCCCeeEEEEecCCCcEEEEecCCCcEEEEeCCc
Q 021657          168 NLTSNGVGSPINKFE-GHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEK  217 (309)
Q Consensus       168 ~~~~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~l~~~~~~dg~i~iwd~~~  217 (309)
                      .      ........ ......+.|+|+|++++|+++-..++.|..++...
T Consensus       257 ~------~~~~~~~~~~~~~~P~gia~~pdG~~lyv~d~~~~~I~~~~~d~  301 (430)
T 3tc9_A          257 T------QETTPLFTIQDSGWEFHIQFHPSGNYAYIVVVNQHYILRSDYDW  301 (430)
T ss_dssp             T------TEEEEEEECSSSSCCEEEEECTTSSEEEEEETTTTEEEEEEEET
T ss_pred             C------CcEEEEEEcCCCCcceeEEEcCCCCEEEEEECCCCEEEEEeCCc
Confidence            5      33211121 12245678999999998787888889999988764

>2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A*

Probab=98.28  E-value=3.5e-05  Score=65.74  Aligned_cols=59  Identities=17%  Similarity=0.133  Sum_probs=36.8

Q ss_pred             eEEEEEcCCCCcceEEEee--ccCC----ceeE---EEeccCCC---CeEEEEcCCCcEEEEecCCCCCCCCCCceeeec
Q 021657          115 CLILWDARVGTSPVIKVEK--AHDA----DLHC---VDWNPLDD---NLILTGSADNSVRMFDRRNLTSNGVGSPINKFE  182 (309)
Q Consensus       115 ~i~iwd~~~~~~~~~~~~~--~~~~----~v~~---~~~~~~~~---~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~  182 (309)
                      .|..+|..+++  ..-.+.  .|..    .+..   +...+ ++   ..++.++.+|.++++|.++      ++.+..+.
T Consensus       273 ~v~Ald~~tG~--~~W~~~~~~~d~~d~~~~~~p~l~~~~~-~G~~~~~v~~~~~~G~l~~lD~~t------G~~~w~~~  343 (571)
T 2ad6_A          273 TIWGRDLDTGM--AKWGYQKTPHDEWDFAGVNQMVLTDQPV-NGKMTPLLSHIDRNGILYTLNREN------GNLIVAEK  343 (571)
T ss_dssp             EEEEEETTTCC--EEEEEESSTTCSSCCCCCCCCEEEEEEE-TTEEEEEEEEECTTSEEEEEETTT------CCEEEEEE
T ss_pred             EEEEEecCCCc--EEEEecCCCCcccccccCCCCEEEeccc-CCcEEEEEEEeCCCcEEEEEECCC------CCEEeeec
Confidence            69999999988  333332  2211    1111   22223 45   3677888999999999988      77666553

>2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis}

Probab=98.28  E-value=9.3e-05  Score=57.48  Aligned_cols=115  Identities=10%  Similarity=0.111  Sum_probs=79.1

Q ss_pred             CeEEEEE---ecCCCcEEEEEc-------------CCCeEEEEEcC---CCCcceEEEeecc-----------CCceeEE
Q 021657           93 TVEDVTF---CPSSAQEFCSVG-------------DDSCLILWDAR---VGTSPVIKVEKAH-----------DADLHCV  142 (309)
Q Consensus        93 ~v~~~~~---~~~~~~~l~s~~-------------~dg~i~iwd~~---~~~~~~~~~~~~~-----------~~~v~~~  142 (309)
                      .+..|.|   .|++ .++++..             .+..|..+|+.   +++......+...           ......+
T Consensus        64 ~~sGl~~~~~D~~g-rL~vv~~~~~af~~~g~~~~g~~~v~~~Dl~~~~tg~~~~~~dL~~~~~~~~~~~g~~~~~~nDv  142 (334)
T 2p9w_A           64 QMSGLSLLTHDNSK-RLFAVMKNAKSFNFADQSSHGASSFHSFNLPLSENSKPVWSVNFEKVQDEFEKKAGKRPFGVVQS  142 (334)
T ss_dssp             EEEEEEESSSSSCC-EEEEEEEETTTTCTTSCCSSSCCEEEEEESSCCTTCCCSEEEESHHHHHHHHHHHSSCCEEEEEE
T ss_pred             eeeEEEEeccCCCC-cEEEEEcccccccccccccCCCCEEEEEcCCcCCCCCEEEEecCccccccccccccccccCCcee
Confidence            3578999   5876 6666543             26789999998   6663222222211           1247899


Q ss_pred             EeccCCCCeEEEEcCC-CcEEEEecCCCCCCCCCCceeeec------cCCCCeeEEEEecCCCcEEEEecCCCcEEEEeC
Q 021657          143 DWNPLDDNLILTGSAD-NSVRMFDRRNLTSNGVGSPINKFE------GHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDY  215 (309)
Q Consensus       143 ~~~~~~~~~l~~~~~d-g~i~i~d~~~~~~~~~~~~~~~~~------~~~~~v~~~~~~~~~~~l~~~~~~dg~i~iwd~  215 (309)
                      +..+ +|+..++++.. +.|..++...       +.+..+.      ......+.|++.|+|..|++..+ .|.+..+|+
T Consensus       143 avD~-~GnaYVt~s~~~~~I~rV~pdG-------~~~~~~~~~~~~~~~~~G~nGIv~~pdg~~Liv~~~-~g~L~~fD~  213 (334)
T 2p9w_A          143 AQDR-DGNSYVAFALGMPAIARVSADG-------KTVSTFAWESGNGGQRPGYSGITFDPHSNKLIAFGG-PRALTAFDV  213 (334)
T ss_dssp             EECT-TSCEEEEEEESSCEEEEECTTS-------CCEEEEEECCCCSSSCCSCSEEEEETTTTEEEEESS-SSSEEEEEC
T ss_pred             EECC-CCCEEEeCCCCCCeEEEEeCCC-------CEEeeeeecCCCcccccCcceEEEeCCCCEEEEEcC-CCeEEEEcC
Confidence            9999 99999999888 8887777663       3333221      11234679999999997776666 999999998


Q ss_pred             Cc
Q 021657          216 EK  217 (309)
Q Consensus       216 ~~  217 (309)
                      +.
T Consensus       214 ~~  215 (334)
T 2p9w_A          214 SK  215 (334)
T ss_dssp             SS
T ss_pred             CC
Confidence            84

>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A

Probab=98.26  E-value=1.4e-05  Score=69.73  Aligned_cols=161  Identities=9%  Similarity=-0.051  Sum_probs=97.9

Q ss_pred             CCeEEEEEecCCCcEEEEEcCCCeEEEEEcCCC---CcceEEEeeccCCceeEEEeccCCCCeEEEEcCCCcEEEEecCC
Q 021657           92 DTVEDVTFCPSSAQEFCSVGDDSCLILWDARVG---TSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRN  168 (309)
Q Consensus        92 ~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~---~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~  168 (309)
                      ..+..++|.+.+..++++-...+.|+.+++...   .. ....+.........|++.+..++++++-...+.|.++++..
T Consensus       406 ~~p~gla~d~~~~~Ly~sD~~~~~I~~~~~~g~~~~~~-~~~~i~~~~~~P~glavD~~~g~LY~tD~~~~~I~v~d~dg  484 (699)
T 1n7d_A          406 RNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSS-YDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKG  484 (699)
T ss_dssp             TTCCCCEEETTTTEEEECCTTTTSBEEEESCCCCC-CC-CCCBCCSCC--CCCEECCCSSSBCEECCTTTSCEEEEBSSS
T ss_pred             cceEEEccccccCeEEEEecCCCeEEEEecCCCCCCcc-eEEEEeCCCCCcceEEEEeeCCcEEEEeccCCeEEEEecCC
Confidence            345688999876466666666788999998751   11 11122122234567888863566666666678999999875


Q ss_pred             CCCCCCCCceeeeccCCCCeeEEEEecCCCcEEEEecCC-CcEEEEeCCcccccccCCCCCcCCCCceeeeecCCCccee
Q 021657          169 LTSNGVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAED-GLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKVV  247 (309)
Q Consensus       169 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~d-g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~  247 (309)
                            ......+.........|++.|.+.+|+++-... +.|..+++.....             ..+.  ...-...+
T Consensus       485 ------~~~~~l~~~~~~~P~giavDp~~g~ly~td~~~~~~I~~~~~dG~~~-------------~~l~--~~~l~~Pn  543 (699)
T 1n7d_A          485 ------VKRKTLFREQGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDI-------------YSLV--TENIQWPN  543 (699)
T ss_dssp             ------CCEEEECCCSSCCCCCEECCSSSSCCEECCCSSSCCEEBCCSSSCCC-------------CEES--CSSCSSCC
T ss_pred             ------CceEEEEeCCCCCcceEEEccCCCcEEEcccCCCCeEEEEeCCCCCe-------------eEEE--eCCCCCcc
Confidence                  332222222234567899999877677555333 6777777654111             0111  11223467


Q ss_pred             eEEEccCCCeEEEEecCCCCCCCCCCeEEEEEcc
Q 021657          248 DFHWNASDPWTVVSVSDDCDSTGGGGTLQIWRMS  281 (309)
Q Consensus       248 ~~~~~~~~~~~~~s~s~d~~s~~~dg~v~vw~~~  281 (309)
                      .|+|+|++.+|+++-+..       +.|..+++.
T Consensus       544 Glavd~~~~~LY~aD~~~-------~~I~~~d~d  570 (699)
T 1n7d_A          544 GITLDLLSGRLYWVDSKL-------HSISSIDVN  570 (699)
T ss_dssp             CEEECTTTCCEEEEETTT-------TEEEEECSS
T ss_pred             EEEEeccCCEEEEEecCC-------CeEEEEccC
Confidence            899999888777765544       788888875

>3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A

Probab=98.25  E-value=0.00092  Score=52.46  Aligned_cols=149  Identities=7%  Similarity=0.121  Sum_probs=89.7

Q ss_pred             CCeEEEEEcCCCCcceEEEeec------cC-CceeEEEe--ccCCCC-eEEEEcCCCcEEEEecCCCCC-CCCCCceeee
Q 021657          113 DSCLILWDARVGTSPVIKVEKA------HD-ADLHCVDW--NPLDDN-LILTGSADNSVRMFDRRNLTS-NGVGSPINKF  181 (309)
Q Consensus       113 dg~i~iwd~~~~~~~~~~~~~~------~~-~~v~~~~~--~~~~~~-~l~~~~~dg~i~i~d~~~~~~-~~~~~~~~~~  181 (309)
                      +++|.+|++..... .......      .. ..+..+|+  +|..+. ++++...+|.+..|++..... ....+.++++
T Consensus        98 ~n~l~vf~iDp~~~-~l~~i~~~~~pv~t~~~~pyGlcly~~~~~g~~yafV~~k~G~~~q~~l~~~~~g~~~~~lVR~f  176 (355)
T 3amr_A           98 KNTIEIYAIDGKNG-TLQSMTDPDHPIATAINEVYGFTLYHSQKTGKYYAMVTGKEGEFEQYELKADKNGYISGKKVRAF  176 (355)
T ss_dssp             CCEEEEEEECTTTC-CEEECSCTTSCEECCCSSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSCEEEEEEEEE
T ss_pred             CCeEEEEEECCCCC-ceeeccccccCcCCCCCCeeEEEEEecCCCCcEEEEEECCCCeEEEEEEEeCCCCcccceEEEEe
Confidence            58999997742221 1222211      12 56778888  773343 688888899999999853210 0114667777


Q ss_pred             ccCCCCeeEEEEecCCCcEEEEecCCCcEEEEeCCcccccccCCCCCcCCCCceeeee-cCC-CcceeeEEE--ccCCC-
Q 021657          182 EGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQH-AGH-RDKVVDFHW--NASDP-  256 (309)
Q Consensus       182 ~~~~~~v~~~~~~~~~~~l~~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~-~~~-~~~v~~~~~--~~~~~-  256 (309)
                      .. .+.+..+...+...+|+ .+-++.-|..|+.+.....          ....+... .++ ...+..|++  .+++. 
T Consensus       177 ~l-gsq~EgcvvDd~~g~Ly-v~eEd~GIw~~da~p~~~~----------~~~~v~~~~~g~l~aDvEGLai~~~~~g~g  244 (355)
T 3amr_A          177 KM-NSQTEGMAADDEYGRLY-IAEEDEAIWKFSAEPDGGS----------NGTVIDRADGRHLTRDIEGLTIYYAADGKG  244 (355)
T ss_dssp             EC-SSCEEEEEEETTTTEEE-EEETTTEEEEEECSTTSCS----------CCEEEEEBSSSSBCSCEEEEEEEECGGGCE
T ss_pred             cC-CCCcceEEEcCCCCeEE-EecccceEEEEeCCcCCCC----------CceEEEEecCCccccCcceEEEEecCCCCE
Confidence            74 45788889998888766 7777766666664431100          01222222 122 236777877  45555 


Q ss_pred             eEEEEecCCCCCCCCCCeEEEEEcc
Q 021657          257 WTVVSVSDDCDSTGGGGTLQIWRMS  281 (309)
Q Consensus       257 ~~~~s~s~d~~s~~~dg~v~vw~~~  281 (309)
                      +|++++-.+       +++.+||..
T Consensus       245 yLivSsQG~-------~s~~Vydr~  262 (355)
T 3amr_A          245 YLMASSQGN-------SSYAIYDRQ  262 (355)
T ss_dssp             EEEEEEGGG-------TEEEEEESS
T ss_pred             EEEEEcCCC-------CEEEEEECC
Confidence            677766444       799999996

>2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis}

Probab=98.23  E-value=0.00034  Score=54.39  Aligned_cols=163  Identities=12%  Similarity=0.129  Sum_probs=103.6

Q ss_pred             ccCCeEEEEEecCCCcEEEEEcCCCeEEEEEcCCCCcceEEEeecc-----C--CceeEEEe---ccCCCCeEEEEc---
Q 021657           90 HEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPVIKVEKAH-----D--ADLHCVDW---NPLDDNLILTGS---  156 (309)
Q Consensus        90 ~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~-----~--~~v~~~~~---~~~~~~~l~~~~---  156 (309)
                      ...--.+++|++.+..++++.-..++|..||...+.  ........     .  ..+..|.|   .| .+.++++..   
T Consensus        11 ~~~yPE~~~wd~~~g~~~vs~l~~g~V~~~~~~~~~--~~~~~~~~~s~~g~~~~~~sGl~~~~~D~-~grL~vv~~~~~   87 (334)
T 2p9w_A           11 KNLTPEDTIYDRTRQVFYQSNLYKGRIEVYNPKTQS--HFNVVIDGASSNGDGEQQMSGLSLLTHDN-SKRLFAVMKNAK   87 (334)
T ss_dssp             TTCCCSCEEEETTTTEEEEEETTTTEEEEECTTTCC--EEEECCTTTCCSSCCSEEEEEEEESSSSS-CCEEEEEEEETT
T ss_pred             cccCCcCccCcCCCCEEEEEeccCCEEEEEcCCCCe--EEEEecCCccccCCCcceeeEEEEeccCC-CCcEEEEEcccc
Confidence            334456789998764666666589999999987554  22222221     1  14689999   68 677777543   


Q ss_pred             ----------CCCcEEEEecC---CCCCCCCCCceeeec--c-----------CCCCeeEEEEecCCCcEEEEecCC-Cc
Q 021657          157 ----------ADNSVRMFDRR---NLTSNGVGSPINKFE--G-----------HSAAVLCVQWSPDKSSVFGSSAED-GL  209 (309)
Q Consensus       157 ----------~dg~i~i~d~~---~~~~~~~~~~~~~~~--~-----------~~~~v~~~~~~~~~~~l~~~~~~d-g~  209 (309)
                                .+..+..||+.   +      ++.+....  .           .....+.++..++|+ .+++++.. +.
T Consensus        88 af~~~g~~~~g~~~v~~~Dl~~~~t------g~~~~~~dL~~~~~~~~~~~g~~~~~~nDvavD~~Gn-aYVt~s~~~~~  160 (334)
T 2p9w_A           88 SFNFADQSSHGASSFHSFNLPLSEN------SKPVWSVNFEKVQDEFEKKAGKRPFGVVQSAQDRDGN-SYVAFALGMPA  160 (334)
T ss_dssp             TTCTTSCCSSSCCEEEEEESSCCTT------CCCSEEEESHHHHHHHHHHHSSCCEEEEEEEECTTSC-EEEEEEESSCE
T ss_pred             cccccccccCCCCEEEEEcCCcCCC------CCEEEEecCccccccccccccccccCCceeEECCCCC-EEEeCCCCCCe
Confidence                      26779999998   6      55544332  1           123478999999999 56778777 77


Q ss_pred             EEEEeCCcccccccCCCCCcCCCCceeeee--cCCCcceeeEEEccCCCeEEEEecCCCCCCCCCCeEEEEEccc
Q 021657          210 LNIWDYEKVGKKVEQGPRTTNYPAGLFFQH--AGHRDKVVDFHWNASDPWTVVSVSDDCDSTGGGGTLQIWRMSD  282 (309)
Q Consensus       210 i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~v~~~~~~~~~~~~~~s~s~d~~s~~~dg~v~vw~~~~  282 (309)
                      |...+...  +....          .....  .......+.|+++|++..|++.-+ +       |.|..+|+..
T Consensus       161 I~rV~pdG--~~~~~----------~~~~~~~~~~~~G~nGIv~~pdg~~Liv~~~-~-------g~L~~fD~~~  215 (334)
T 2p9w_A          161 IARVSADG--KTVST----------FAWESGNGGQRPGYSGITFDPHSNKLIAFGG-P-------RALTAFDVSK  215 (334)
T ss_dssp             EEEECTTS--CCEEE----------EEECCCCSSSCCSCSEEEEETTTTEEEEESS-S-------SSEEEEECSS
T ss_pred             EEEEeCCC--CEEee----------eeecCCCcccccCcceEEEeCCCCEEEEEcC-C-------CeEEEEcCCC
Confidence            65555443  21110          00000  111234679999999998887554 4       9999999874

>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*

Probab=98.19  E-value=0.00026  Score=55.72  Aligned_cols=114  Identities=13%  Similarity=0.048  Sum_probs=73.0

Q ss_pred             CeEEEEEecCCCcEEEEEcCCCeEEEEEcCCCCcceEEEeeccCCceeEEEeccCCCCeEEEEcC----------CCcEE
Q 021657           93 TVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSA----------DNSVR  162 (309)
Q Consensus        93 ~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~----------dg~i~  162 (309)
                      ....++++|++..++++-...+.|..+++..........+..... ...+++++ ++++.++...          .+.|.
T Consensus       186 ~p~gia~~~dg~~lyv~d~~~~~I~~~~~~~~~~~~~~~~~~~~g-P~gi~~d~-~G~l~va~~~~~~~~~~~~~~~~v~  263 (322)
T 2fp8_A          186 VPGGAEVSADSSFVLVAEFLSHQIVKYWLEGPKKGTAEVLVKIPN-PGNIKRNA-DGHFWVSSSEELDGNMHGRVDPKGI  263 (322)
T ss_dssp             CCCEEEECTTSSEEEEEEGGGTEEEEEESSSTTTTCEEEEEECSS-EEEEEECT-TSCEEEEEEEETTSSTTSCEEEEEE
T ss_pred             cCcceEECCCCCEEEEEeCCCCeEEEEECCCCcCCccceEEeCCC-CCCeEECC-CCCEEEEecCcccccccCCCccEEE
Confidence            356789999984456666677899999987532111222211223 78899999 8887666544          45677


Q ss_pred             EEecCCCCCCCCCCceeeeccCC----CCeeEEEEecCCCcEEEEecCCCcEEEEeCCc
Q 021657          163 MFDRRNLTSNGVGSPINKFEGHS----AAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEK  217 (309)
Q Consensus       163 i~d~~~~~~~~~~~~~~~~~~~~----~~v~~~~~~~~~~~l~~~~~~dg~i~iwd~~~  217 (309)
                      .+|..       ++.+..+....    ..++.+++ .++. |+++...++.|..+++..
T Consensus       264 ~~d~~-------G~~~~~~~~~~g~~~~~~~~~~~-~~g~-L~v~~~~~~~i~~~~~~~  313 (322)
T 2fp8_A          264 KFDEF-------GNILEVIPLPPPFAGEHFEQIQE-HDGL-LYIGTLFHGSVGILVYDK  313 (322)
T ss_dssp             EECTT-------SCEEEEEECCTTTTTSCCCEEEE-ETTE-EEEECSSCSEEEEEEC--
T ss_pred             EECCC-------CCEEEEEECCCCCccccceEEEE-eCCE-EEEeecCCCceEEEeccc
Confidence            88763       56666665332    34666766 3444 776777788999999875

>1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A*

Probab=98.16  E-value=9.6e-05  Score=63.18  Aligned_cols=149  Identities=13%  Similarity=0.038  Sum_probs=80.9

Q ss_pred             EEEecCCCcEEEEeCCccccccccCCcc-----cc--ccCCCCceeecCCC----CCCCCcccCCCCCcCcccccccccC
Q 021657           24 VLSGGKDKSVVLWSIQDHITSSATDPAT-----AK--SAGSSGSIIKQSPK----PGDGNDKAADGPSVGPRGIYNGHED   92 (309)
Q Consensus        24 l~t~~~dg~i~vwd~~~~~~~~~~~~~~-----~~--~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~   92 (309)
                      ++.++.|+.|..+|.+++..........     ..  .+........+...    ...+.+..++..+++.+-.+.....
T Consensus       124 V~v~t~dg~l~AlDa~TG~~~W~~~~~~~~~~~~~~ssP~v~~g~V~vg~~g~e~g~~g~v~A~D~~TG~~~W~~~~~~~  203 (599)
T 1w6s_A          124 ILKTQLDGNVAALNAETGETVWKVENSDIKVGSTLTIAPYVVKDKVIIGSSGAELGVRGYLTAYDVKTGEQVWRAYATGP  203 (599)
T ss_dssp             EEEECTTSEEEEEETTTCCEEEEEECCCGGGTCBCCSCCEEETTEEEECCBCGGGTCCCEEEEEETTTCCEEEEEESSSC
T ss_pred             EEEEcCCCEEEEEECCCCCEEEeecCCCCCccceeecCCEEECCEEEEEecccccCCCCeEEEEECCCCcEEEEEcCCCC
Confidence            7888889999999998885544322111     00  00000111111111    1245667777776665543322110


Q ss_pred             -------------------------------------Ce-EEEEEecCCCcEEEEEcCC----------------CeEEE
Q 021657           93 -------------------------------------TV-EDVTFCPSSAQEFCSVGDD----------------SCLIL  118 (309)
Q Consensus        93 -------------------------------------~v-~~~~~~~~~~~~l~s~~~d----------------g~i~i  118 (309)
                                                           .+ ..+++.+.. .+++.+..+                +.|..
T Consensus       204 ~~~~~~~p~~~~~~~~~g~~~~g~~tw~g~~~~~gg~~~W~~~a~d~~~-g~vy~g~g~~~p~~~~~r~gd~~y~~sv~A  282 (599)
T 1w6s_A          204 DKDLLLASDFNIKNPHYGQKGLGTGTWEGDAWKIGGGTNWGWYAYDPGT-NLIYFGTGNPAPWNETMRPGDNKWTMTIFG  282 (599)
T ss_dssp             HHHHTBCTTTTTTCGGGCCTTHHHHTSSTTGGGGCCCCCCSCCEEETTT-TEEEEECCCCSCSCGGGSCSCCTTSSEEEE
T ss_pred             ccccccccccccccccccccccccccCCCcceecCCCccccceeEeCCC-CEEEEeCCCCccccCcccCCCccccceEEE
Confidence                                                 01 134566665 455555544                47999


Q ss_pred             EEcCCCCcceEEEeec--cCC-------ceeEEEec-cCCC---CeEEEEcCCCcEEEEecCCCCCCCCCCceeeec
Q 021657          119 WDARVGTSPVIKVEKA--HDA-------DLHCVDWN-PLDD---NLILTGSADNSVRMFDRRNLTSNGVGSPINKFE  182 (309)
Q Consensus       119 wd~~~~~~~~~~~~~~--~~~-------~v~~~~~~-~~~~---~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~  182 (309)
                      +|..+++  ..-.++.  |..       ...-+... . ++   ..++.++.+|.++++|.++      ++.+....
T Consensus       283 ld~~TG~--~~W~~q~~~~d~wd~d~~~~p~l~d~~~~-~G~~~~~v~~~~~~G~l~~lD~~t------G~~lw~~~  350 (599)
T 1w6s_A          283 RDADTGE--AKFGYQKTPHDEWDYAGVNVMMLSEQKDK-DGKARKLLTHPDRNGIVYTLDRTD------GALVSANK  350 (599)
T ss_dssp             EETTTCC--EEEEEESSTTCSSCCCCCCCCEEEEEECT-TSCEEEEEEEECTTSEEEEEETTT------CCEEEEEE
T ss_pred             EeCCCCc--eeeEeecCCCccccccCCCccEEEecccc-CCcEEEEEEEECCCcEEEEEECCC------CCEeeccc
Confidence            9999988  3333322  211       11112221 3 56   5677788999999999998      77766543

>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A*

Probab=98.12  E-value=0.0043  Score=55.35  Aligned_cols=203  Identities=8%  Similarity=0.076  Sum_probs=121.2

Q ss_pred             cceEEEEECCCCCEEEEecCCCcEEEEeCCccccccccCCccccccCCCCceeecCCCCCCCCcccCCCCCcCccccccc
Q 021657           10 NAEFALAMCPTEPYVLSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNG   89 (309)
Q Consensus        10 ~~V~~~~~~~~~~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   89 (309)
                      ..|.++..+++|. |..|+.++-|..|+............                              ..  ...+  
T Consensus       310 ~~i~~i~~D~~g~-lWigt~~~Gl~~~~~~~~~~~~~~~~------------------------------~~--~~~l--  354 (795)
T 4a2l_A          310 RSVRSIFMDSQGG-MWLGTYFGGLNYYHPIRNRFKNIRNI------------------------------PY--KNSL--  354 (795)
T ss_dssp             SCEEEEEECTTSC-EEEEESSSCEEEECGGGGSSEEECCC------------------------------TT--SSSC--
T ss_pred             CcEEEEEEeCCcC-EEEEECCCCeEEeCCCcccceEEcCC------------------------------CC--CCCC--
Confidence            3689999998886 55677777888888654311100000                              00  0001  


Q ss_pred             ccCCeEEEEEecCCCcEEEEEcCCCeEEEEEcCCCCcceEEEee--------ccCCceeEEEeccCCCCeEEEEcCCCcE
Q 021657           90 HEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPVIKVEK--------AHDADLHCVDWNPLDDNLILTGSADNSV  161 (309)
Q Consensus        90 ~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~--------~~~~~v~~~~~~~~~~~~l~~~~~dg~i  161 (309)
                      ....|.++...++| . |-.|+.++-|..||..+++  ......        .....|.++...+ +++.|..|+.++-|
T Consensus       355 ~~~~V~~i~~d~~g-~-lWiGt~~~Gl~~~~~~~~~--~~~~~~~~~~~~~~l~~~~v~~i~~d~-~g~~lWigt~~~Gl  429 (795)
T 4a2l_A          355 SDNVVSCIVEDKDK-N-LWIGTNDGGLNLYNPITQR--FTSYTLQEDESARGIGSNNIKAVYVDE-KKSLVYIGTHAGGL  429 (795)
T ss_dssp             SCSSEEEEEECTTS-C-EEEEESSSCEEEECTTTCC--EEEECCC------CCSCSCEEEEEEET-TTTEEEEEETTTEE
T ss_pred             CCCeeEEEEECCCC-C-EEEEECCCCeEEEcCCCCc--EEEEecCCCCcccCCCCccEEEEEEcC-CCCEEEEEeCcCce
Confidence            23468999888877 4 5567777779999987665  222211        1235688998887 77746777777779


Q ss_pred             EEEecCCCCCCCCCCceeeec-----cCCCCeeEEEEecCCCcEEEEecCCCcEEEEeCCcccccccCCCCCcCCCCcee
Q 021657          162 RMFDRRNLTSNGVGSPINKFE-----GHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLF  236 (309)
Q Consensus       162 ~i~d~~~~~~~~~~~~~~~~~-----~~~~~v~~~~~~~~~~~l~~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~  236 (309)
                      ..||..+      ++. ..+.     .....|.++...++|. |. .|+.+ -+.+||... ++.... ....       
T Consensus       430 ~~~d~~~------~~~-~~~~~~~~~l~~~~v~~i~~d~~g~-lw-igt~~-Gl~~~~~~~-~~~~~~-~~~~-------  490 (795)
T 4a2l_A          430 SILHRNS------GQV-ENFNQRNSQLVNENVYAILPDGEGN-LW-LGTLS-ALVRFNPEQ-RSFTTI-EKEK-------  490 (795)
T ss_dssp             EEEETTT------CCE-EEECTTTSCCSCSCEEEEEECSSSC-EE-EEESS-CEEEEETTT-TEEEEC-CBCT-------
T ss_pred             eEEeCCC------CcE-EEeecCCCCcCCCeeEEEEECCCCC-EE-EEecC-ceeEEeCCC-CeEEEc-cccc-------
Confidence            9999876      332 2222     1245789999888887 44 44444 588888765 111100 0000       


Q ss_pred             eeecCCCcceeeEEEccCCCeEEEEecCCCCCCCCCCeEEEEEcc
Q 021657          237 FQHAGHRDKVVDFHWNASDPWTVVSVSDDCDSTGGGGTLQIWRMS  281 (309)
Q Consensus       237 ~~~~~~~~~v~~~~~~~~~~~~~~s~s~d~~s~~~dg~v~vw~~~  281 (309)
                      ....-....|.++...+++...+.+.          +.|..|+..
T Consensus       491 ~~~~~~~~~i~~i~~d~~g~lWigt~----------~Gl~~~~~~  525 (795)
T 4a2l_A          491 DGTPVVSKQITTLFRDSHKRLWIGGE----------EGLSVFKQE  525 (795)
T ss_dssp             TCCBCCCCCEEEEEECTTCCEEEEES----------SCEEEEEEE
T ss_pred             cccccCCceEEEEEECCCCCEEEEeC----------CceEEEeCC
Confidence            00011235688999988777555332          357788875

>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3

Probab=98.12  E-value=0.0017  Score=50.65  Aligned_cols=146  Identities=7%  Similarity=-0.004  Sum_probs=81.9

Q ss_pred             EEEEEecCCCcEEEEEcCCCeEEEEEcCCCCcceEEEe--------eccCCceeEEEeccCCCC-eEEEEcCCCcEEEEe
Q 021657           95 EDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPVIKVE--------KAHDADLHCVDWNPLDDN-LILTGSADNSVRMFD  165 (309)
Q Consensus        95 ~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~--------~~~~~~v~~~~~~~~~~~-~l~~~~~dg~i~i~d  165 (309)
                      ..++..+.+ ..+++-..++.|..+|...++.......        ...-.....+  +| ++. ++++-...+.|..||
T Consensus       120 ~g~~~~~~~-~~~v~d~~~g~i~~~d~~~~~~~v~~~~~~~~~~~~~~~~~~pngi--s~-dg~~lyv~d~~~~~I~~~~  195 (306)
T 2p4o_A          120 NGITPLSDT-QYLTADSYRGAIWLIDVVQPSGSIWLEHPMLARSNSESVFPAANGL--KR-FGNFLYVSNTEKMLLLRIP  195 (306)
T ss_dssp             EEEEESSSS-EEEEEETTTTEEEEEETTTTEEEEEEECGGGSCSSTTCCSCSEEEE--EE-ETTEEEEEETTTTEEEEEE
T ss_pred             CcccccCCC-cEEEEECCCCeEEEEeCCCCcEeEEEECCccccccccCCCCcCCCc--Cc-CCCEEEEEeCCCCEEEEEE
Confidence            344444444 5566655688888888765421111000        0111234455  77 665 455556678999999


Q ss_pred             cCCCCCCCCCCceeeeccCCCCeeEEEEecCCCcEEEEecCCCcEEEEeCCcccccccCCCCCcCCCCceeeeecCCCcc
Q 021657          166 RRNLTSNGVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDK  245 (309)
Q Consensus       166 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  245 (309)
                      +.....   ......+.. ......++++++|. ++++...++.|.++|...  +..            .+.........
T Consensus       196 ~~~~g~---~~~~~~~~~-~~~P~gi~vd~dG~-l~va~~~~~~V~~~~~~G--~~~------------~~~~~~~~~~~  256 (306)
T 2p4o_A          196 VDSTDK---PGEPEIFVE-QTNIDDFAFDVEGN-LYGATHIYNSVVRIAPDR--STT------------IIAQAEQGVIG  256 (306)
T ss_dssp             BCTTSC---BCCCEEEEE-SCCCSSEEEBTTCC-EEEECBTTCCEEEECTTC--CEE------------EEECGGGTCTT
T ss_pred             eCCCCC---CCccEEEec-cCCCCCeEECCCCC-EEEEeCCCCeEEEECCCC--CEE------------EEeecccccCC
Confidence            874110   111122211 13456789999997 566766778899998642  110            11112222345


Q ss_pred             eeeEEEc---cCCCeEEEEec
Q 021657          246 VVDFHWN---ASDPWTVVSVS  263 (309)
Q Consensus       246 v~~~~~~---~~~~~~~~s~s  263 (309)
                      .++++|.   |++..|+++.+
T Consensus       257 p~~~a~~g~~~d~~~LyVt~~  277 (306)
T 2p4o_A          257 STAVAFGQTEGDCTAIYVVTN  277 (306)
T ss_dssp             EEEEEECCSTTTTTEEEEEEC
T ss_pred             ceEEEEecccCCCCEEEEECC
Confidence            7899998   88888887654

>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A*

Probab=98.10  E-value=0.0038  Score=53.87  Aligned_cols=159  Identities=6%  Similarity=-0.051  Sum_probs=106.2

Q ss_pred             CCeEEEEEecCCCcEEEEEcCCCeEEEEEcCCCCcceEEEeeccCCceeEEEeccCCCCeEEEEcCCCcEEEEecCCCCC
Q 021657           92 DTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTS  171 (309)
Q Consensus        92 ~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~  171 (309)
                      ..+..++|++.++.++.+-..++.|..+++....  ..............+++++..++++++-...+.|.+.++..   
T Consensus        37 ~~~~~l~~d~~~~~lywtD~~~~~I~r~~~~g~~--~~~v~~~g~~~P~GlAvD~~~~~LY~tD~~~~~I~v~~~dG---  111 (628)
T 4a0p_A           37 KEASALDFDVTDNRIYWTDISLKTISRAFMNGSA--LEHVVEFGLDYPEGMAVDWLGKNLYWADTGTNRIEVSKLDG---  111 (628)
T ss_dssp             SCEEEEEEETTTTEEEEEETTTTEEEEEETTSCS--CEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTS---
T ss_pred             CceEEEEEECCCCEEEEEECCCCeEEEEECCCCC--cEEEEeCCCCCcceEEEEeCCCEEEEEECCCCEEEEEecCC---
Confidence            3577999999776777887888999999987554  23333333345678899874566667767778999999875   


Q ss_pred             CCCCCceeeeccCCCCeeEEEEecCCCcEEEEe-cCCCcEEEEeCCcccccccCCCCCcCCCCceeeeecCCCcceeeEE
Q 021657          172 NGVGSPINKFEGHSAAVLCVQWSPDKSSVFGSS-AEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKVVDFH  250 (309)
Q Consensus       172 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~  250 (309)
                         ......+...-.....|++.|...+|+.+- +..+.|...++.....             ..+.   ..-.....++
T Consensus       112 ---~~~~~l~~~~l~~P~~iavdp~~G~lY~tD~g~~~~I~r~~~dG~~~-------------~~l~---~~~~~P~Gla  172 (628)
T 4a0p_A          112 ---QHRQVLVWKDLDSPRALALDPAEGFMYWTEWGGKPKIDRAAMDGSER-------------TTLV---PNVGRANGLT  172 (628)
T ss_dssp             ---TTCEEEECSSCCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSC-------------EEEE---CSCSSEEEEE
T ss_pred             ---CcEEEEEeCCCCCcccEEEccCCCeEEEeCCCCCCEEEEEeCCCCce-------------EEEE---CCCCCcceEE
Confidence               222222223334578999999766677664 2356777777664111             1111   2344678999


Q ss_pred             EccCCCeEEEEecCCCCCCCCCCeEEEEEcc
Q 021657          251 WNASDPWTVVSVSDDCDSTGGGGTLQIWRMS  281 (309)
Q Consensus       251 ~~~~~~~~~~s~s~d~~s~~~dg~v~vw~~~  281 (309)
                      +++++..|+.+-...       +.|...++.
T Consensus       173 lD~~~~~LY~aD~~~-------~~I~~~d~d  196 (628)
T 4a0p_A          173 IDYAKRRLYWTDLDT-------NLIESSNML  196 (628)
T ss_dssp             EETTTTEEEEEETTT-------TEEEEEETT
T ss_pred             EccccCEEEEEECCC-------CEEEEEcCC
Confidence            999888888765544       788888886

>1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1

Probab=98.09  E-value=0.00025  Score=60.60  Aligned_cols=60  Identities=23%  Similarity=0.238  Sum_probs=38.1

Q ss_pred             CeEEEEEcCCCCcceEEEee--ccCC----ceeE---EEec-cCCC---CeEEEEcCCCcEEEEecCCCCCCCCCCceee
Q 021657          114 SCLILWDARVGTSPVIKVEK--AHDA----DLHC---VDWN-PLDD---NLILTGSADNSVRMFDRRNLTSNGVGSPINK  180 (309)
Q Consensus       114 g~i~iwd~~~~~~~~~~~~~--~~~~----~v~~---~~~~-~~~~---~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~  180 (309)
                      +.|..+|..+++  ..-.++  .|..    .+..   +... . ++   ..++.++.+|.++++|.++      ++.+..
T Consensus       291 ~~v~AlD~~TG~--~~W~~q~~~~d~wd~~~~~~p~l~~~~~~-~G~~~~~v~~~~~~G~l~~lD~~t------G~~lw~  361 (582)
T 1flg_A          291 SGQVGVDPSSGE--VKWFYQHTPNDAWDFSGNNELVLFDYKAK-DGKIVKATAHADRNGFFYVVDRSN------GKLQNA  361 (582)
T ss_dssp             SEEEEECTTTCC--EEEEEESSTTCCSCCCCCCCCEEEEEECS-SSCEEEEEEEECTTSEEEEEETTT------CCEEEE
T ss_pred             ceEEEEeCCCCC--EEEEEeCCCCCcccccCCCCcEEEeeecC-CCCEEEEEEEECCCceEEEEECCC------CCEecc
Confidence            689999999998  333332  2321    1111   1221 3 45   3788899999999999988      666655


Q ss_pred             ec
Q 021657          181 FE  182 (309)
Q Consensus       181 ~~  182 (309)
                      +.
T Consensus       362 ~~  363 (582)
T 1flg_A          362 FP  363 (582)
T ss_dssp             EE
T ss_pred             cc
Confidence            43

>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1

Probab=98.08  E-value=0.0004  Score=60.51  Aligned_cols=52  Identities=10%  Similarity=0.008  Sum_probs=37.8

Q ss_pred             CCcEEEEecCCCCCCCCCCceeeeccCCCCeeEEEEecCCCcEEEEecCCCcEEEEeCCc
Q 021657          158 DNSVRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEK  217 (309)
Q Consensus       158 dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~dg~i~iwd~~~  217 (309)
                      +|.|..||+.+      ++.+.+..... +.....+...+.. +..++.|+.++.||.++
T Consensus       437 ~g~l~A~D~~t------G~~~W~~~~~~-~~~~~~~~t~gg~-vf~g~~dg~l~a~d~~t  488 (668)
T 1kv9_A          437 SGALLAWDPVK------QKAAWKVPYPT-HWNGGTLSTAGNL-VFQGTAAGQMHAYSADK  488 (668)
T ss_dssp             EEEEEEEETTT------TEEEEEEEESS-SCCCCEEEETTTE-EEEECTTSEEEEEETTT
T ss_pred             cceEEEEeCCC------CcEEEEccCCC-CCcCceeEeCCCE-EEEECCcccchhhhhhc
Confidence            47899999998      88877776432 3333344555664 45789999999999987

>3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron}

Probab=98.04  E-value=0.00066  Score=56.25  Aligned_cols=174  Identities=9%  Similarity=0.084  Sum_probs=99.1

Q ss_pred             CeEEEEEecC-CCcEEEEEcCCCeEEEEEcCCCCcceEEEeecc---CCceeEEEe-------ccCCCCeEEEEcCCC--
Q 021657           93 TVEDVTFCPS-SAQEFCSVGDDSCLILWDARVGTSPVIKVEKAH---DADLHCVDW-------NPLDDNLILTGSADN--  159 (309)
Q Consensus        93 ~v~~~~~~~~-~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~---~~~v~~~~~-------~~~~~~~l~~~~~dg--  159 (309)
                      ....|+|.|. +.+++++-...+.|++.|+..+.  ........   ......++|       ++ +++.|+++...+  
T Consensus       140 ~p~~la~dp~~~~~Lyv~~~~~~~i~~ID~~~~~--v~~l~~~~~~~~~~p~~ia~~~~~~~~d~-~G~~lyvad~~~~~  216 (496)
T 3kya_A          140 DNGRLAFDPLNKDHLYICYDGHKAIQLIDLKNRM--LSSPLNINTIPTNRIRSIAFNKKIEGYAD-EAEYMIVAIDYDGK  216 (496)
T ss_dssp             SEEEEEEETTEEEEEEEEEETEEEEEEEETTTTE--EEEEECCTTSSCSBEEEEEECCCBTTTBC-TTCEEEEEECCCTT
T ss_pred             CCCEEEEccCCCCEEEEEECCCCeEEEEECCCCE--EEEEEccCccccCCCcEEEEeecccccCC-CCCEEEEEeCCCCC
Confidence            4678999983 43556665555779999987766  33332221   235789999       99 888666655543  


Q ss_pred             -----cEEEEecCCCCCCCCCC--c-eeeeccCCCCeeEEEEecCCCcEEEEecCCCcEEEEeCCc------ccccccCC
Q 021657          160 -----SVRMFDRRNLTSNGVGS--P-INKFEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEK------VGKKVEQG  225 (309)
Q Consensus       160 -----~i~i~d~~~~~~~~~~~--~-~~~~~~~~~~v~~~~~~~~~~~l~~~~~~dg~i~iwd~~~------~~~~~~~~  225 (309)
                           .|.+++......   ..  . ...+... .....++++|++.+|+++-..++.|..+|+..      .+..-...
T Consensus       217 ~~~~~~V~~i~r~~~G~---~~~~~~~~~v~~~-~~p~giavdp~~g~LYvtd~~~g~V~r~d~~~~~~~~~tg~~~tp~  292 (496)
T 3kya_A          217 GDESPSVYIIKRNADGT---FDDRSDIQLIAAY-KQCNGATIHPINGELYFNSYEKGQVFRLDLVDYFKTIKNGGSWDPI  292 (496)
T ss_dssp             GGGEEEEEEEECCTTSC---CSTTSCEEEEEEE-SCCCCEEECTTTCCEEEEETTTTEEEEECHHHHHHHHHTTCCCCCB
T ss_pred             cccCceEEEEecCCCCc---eeecccceeeccC-CCceEEEEcCCCCeEEEEECCCCEEEEEecccccccccCceeeccc
Confidence                 266666332000   11  0 0122211 23457889997777888888899999999872      11110000


Q ss_pred             CCCcCCCCceeeeecCCCcceeeEEEccCCCeEEEEecCCCCCCCCCCeEEEEEcc
Q 021657          226 PRTTNYPAGLFFQHAGHRDKVVDFHWNASDPWTVVSVSDDCDSTGGGGTLQIWRMS  281 (309)
Q Consensus       226 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~s~d~~s~~~dg~v~vw~~~  281 (309)
                      ..........+... +.......++|+|++..++++-+..       ..|+.++..
T Consensus       293 ~~~~~g~~~~l~~~-~~~~~p~~ia~~p~G~~lYvaD~~~-------h~I~kid~d  340 (496)
T 3kya_A          293 VKNNPNTFKQLFTI-ADPSWEFQIFIHPTGKYAYFGVINN-------HYFMRSDYD  340 (496)
T ss_dssp             GGGCTTTEEEEEEC-SSSSCCEEEEECTTSSEEEEEETTT-------TEEEEEEEE
T ss_pred             ccccccccceeEec-CCCCCceEEEEcCCCCEEEEEeCCC-------CEEEEEecC
Confidence            00000000112222 2234567899999999767655444       788887764

>2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major}

Probab=98.03  E-value=0.00097  Score=59.01  Aligned_cols=116  Identities=14%  Similarity=0.109  Sum_probs=61.9

Q ss_pred             CeEEEEEecCCCcEEEEEc--CCCeEEEEEcCCCCcce--EEEeeccCCceeEEEeccCCCCeEEEEcCC--C--cEEEE
Q 021657           93 TVEDVTFCPSSAQEFCSVG--DDSCLILWDARVGTSPV--IKVEKAHDADLHCVDWNPLDDNLILTGSAD--N--SVRMF  164 (309)
Q Consensus        93 ~v~~~~~~~~~~~~l~s~~--~dg~i~iwd~~~~~~~~--~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d--g--~i~i~  164 (309)
                      ....+.|+|+|..++++..  ....|.++|+.++....  ............++.|+. ++.+++....+  +  .|..+
T Consensus       272 ~~~~~~~SpDg~~l~~~~~~~~~~~l~~~d~~~~~~~~~~~~l~~~~~~~~~s~~~~~-g~~l~~~t~~~~a~~~~L~~~  350 (751)
T 2xe4_A          272 FSAFMYKAADTNTLCIGSQSPETAEVHLLDLRKGNAHNTLEIVRPREKGVRYDVQMHG-TSHLVILTNEGGAVNHKLLIA  350 (751)
T ss_dssp             CEEEEEECTTSSEEEEEEECSSCEEEEEEESSSCTTCCCEEESSCCCTTCCEEEEEET-TTEEEEEECTTTCTTCEEEEE
T ss_pred             eEEEEEECCCCCEEEEEecCCCCceEEEEECCCCCCCceeEEeecCCCCceEEEeeee-CCEEEEEeCCCCCCCcEEEEE
Confidence            4567899999954444443  24568888987653222  223333344556666554 44455555444  3  56666


Q ss_pred             ecCCCCCCCCCCceee-eccCCCCeeEEEEecCCCcEEEEecCCCcEEEEeC
Q 021657          165 DRRNLTSNGVGSPINK-FEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDY  215 (309)
Q Consensus       165 d~~~~~~~~~~~~~~~-~~~~~~~v~~~~~~~~~~~l~~~~~~dg~i~iwd~  215 (309)
                      |+.+      ...... +..+...+.--.+.+.+.+++++...++..++|-+
T Consensus       351 d~~~------~~~~~~~li~~~~~~~l~~~~~~~~~lv~~~~~~g~~~l~~~  396 (751)
T 2xe4_A          351 PRGQ------PSDWSHVLVDHSEDVFMESIAVRSNYLVVAGRRAGLTRIWTM  396 (751)
T ss_dssp             ETTS------TTCCCCEEECCCSSEEEEEEEECSSEEEEEEEETTEEEEEEE
T ss_pred             cCCC------cccceeeEECCCCCcEEEEEEEECCEEEEEEEeCCEEEEEEE
Confidence            6654      111122 22233322222344456677878888887555543

>2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A*

Probab=98.02  E-value=0.0011  Score=56.67  Aligned_cols=52  Identities=19%  Similarity=0.137  Sum_probs=36.3

Q ss_pred             CCcEEEEecCCCCCCCCCCceeeeccCCCCeeEEEEecCCCcEEEEecCCCcEEEEeCCc
Q 021657          158 DNSVRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEK  217 (309)
Q Consensus       158 dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~dg~i~iwd~~~  217 (309)
                      +|.|..||+.+      ++.+.++... ..+....+...+..++ .++.||.++.+|.++
T Consensus       443 ~g~l~a~D~~t------G~~~W~~~~~-~~~~~~~~~t~gg~v~-~g~~dg~l~a~D~~t  494 (571)
T 2ad6_A          443 MGQIRAFDLTT------GKAKWTKWEK-FAAWGGTLYTKGGLVW-YATLDGYLKALDNKD  494 (571)
T ss_dssp             CEEEEEECTTT------CCEEEEEEES-SCCCSBCEEETTTEEE-EECTTSEEEEEETTT
T ss_pred             CCeEEEEECCC------CCEEEEecCC-CCccceeEEECCCEEE-EEcCCCeEEEEECCC
Confidence            57899999998      8887777533 2233333333455454 688999999999987

>4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus}

Probab=98.01  E-value=0.004  Score=51.14  Aligned_cols=173  Identities=9%  Similarity=0.097  Sum_probs=95.0

Q ss_pred             CeEEEEEecCCCcEEEEEcCCCeEEEEEcCCCCcceEEEee-ccCCceeEEEeccCCCC-eEEEEcCCCcEEEEecCCCC
Q 021657           93 TVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPVIKVEK-AHDADLHCVDWNPLDDN-LILTGSADNSVRMFDRRNLT  170 (309)
Q Consensus        93 ~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~-~l~~~~~dg~i~i~d~~~~~  170 (309)
                      ....++++|+++.++++-..++.|+.+|..++... ..... +....-..++|+| +++ ++++-...+.|+.++.....
T Consensus       229 ~P~giavd~~~G~lyv~d~~~~~V~~~d~~~g~~~-~~~~~~~~~~~~~~ia~dp-dG~~LYvad~~~~~I~~~~~d~~~  306 (433)
T 4hw6_A          229 GAKTCAVHPQNGKIYYTRYHHAMISSYDPATGTLT-EEEVMMDTKGSNFHIVWHP-TGDWAYIIYNGKHCIYRVDYNRET  306 (433)
T ss_dssp             SBCCCEECTTTCCEEECBTTCSEEEEECTTTCCEE-EEEEECSCCSSCEEEEECT-TSSEEEEEETTTTEEEEEEBCTTT
T ss_pred             CCCEEEEeCCCCeEEEEECCCCEEEEEECCCCeEE-EEEeccCCCCCcccEEEeC-CCCEEEEEeCCCCEEEEEeCCCCC
Confidence            45678889943376667667889999998766620 12221 1122234699999 887 55555567889998865311


Q ss_pred             CCCCCCc--eeeecc---------------CCCCeeEEEE---------ecCCCcEEEEecCCCcEEEEeCCcccccccC
Q 021657          171 SNGVGSP--INKFEG---------------HSAAVLCVQW---------SPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQ  224 (309)
Q Consensus       171 ~~~~~~~--~~~~~~---------------~~~~v~~~~~---------~~~~~~l~~~~~~dg~i~iwd~~~~~~~~~~  224 (309)
                          +..  ...+.+               .-.....+++         .+++. |+++-..++.|+.++..  +.....
T Consensus       307 ----~~~~~~~~~ag~~g~~g~~dg~~~~a~~~~P~giav~~n~~y~~dd~~g~-lyvaD~~n~~I~~~~~~--G~v~t~  379 (433)
T 4hw6_A          307 ----GKLAVPYIVCGQHSSPGWVDGMGTGARLWGPNQGIFVKNEAYAGEEDEYD-FYFCDRDSHTVRVLTPE--GRVTTY  379 (433)
T ss_dssp             ----CCBCCCEEEEECTTCCCCBCEEGGGSBCSSEEEEEEEECGGGTTSSCCEE-EEEEETTTTEEEEECTT--SEEEEE
T ss_pred             ----cccCcEEEEEecCCCCccCCCcccceEEcCCccEEEEccccccccCCCCc-EEEEECCCCEEEEECCC--CCEEEE
Confidence                111  111111               1123567898         56665 67677778889998853  222111


Q ss_pred             CCCCcCCCCcee---eeecCCCcceeeEEEccCCCeEEEEecCCCCCCCCCCeEEEEEcc
Q 021657          225 GPRTTNYPAGLF---FQHAGHRDKVVDFHWNASDPWTVVSVSDDCDSTGGGGTLQIWRMS  281 (309)
Q Consensus       225 ~~~~~~~~~~~~---~~~~~~~~~v~~~~~~~~~~~~~~s~s~d~~s~~~dg~v~vw~~~  281 (309)
                      ............   ......-.....|+++|.+..|+++-...       +.|+..+++
T Consensus       380 ~G~g~~~~~G~~dG~~~~~~~~~~P~giavd~~~g~lyVaD~~n-------~rIr~i~~e  432 (433)
T 4hw6_A          380 AGRGNSREWGYVDGELRSQALFNHPTSIAYDMKRKCFYIGDCDN-------HRVRKIAPE  432 (433)
T ss_dssp             ECCCTTCSSCCBCEETTTTCBCSSEEEEEEETTTTEEEEEEGGG-------TEEEEEEEC
T ss_pred             EeCCCCCccccCCCccccccEeCCCcEEEEECCCCEEEEEeCCC-------CEEEEEecC
Confidence            110000000000   00011123467899995566666655544       688887765

>1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1

Probab=97.97  E-value=0.0019  Score=55.29  Aligned_cols=82  Identities=12%  Similarity=0.181  Sum_probs=48.6

Q ss_pred             CCcEEEEecCCCCCCCCCCceeeeccCCCCeeEEEEecCCCcEEEEecCCCcEEEEeCCcccccccCCCCCcCCCCceee
Q 021657          158 DNSVRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFF  237 (309)
Q Consensus       158 dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~  237 (309)
                      +|.|.-||+.+      ++.+.+..... ++..-.....+. ++..++.|+.++.||.++               .+.+.
T Consensus       465 ~G~l~A~D~~t------G~~~W~~~~~~-~~~~g~~~tagg-lvf~g~~dg~l~A~D~~t---------------G~~lW  521 (582)
T 1flg_A          465 VGSLRAMDPVS------GKVVWEHKEHL-PLWAGVLATAGN-LVFTGTGDGYFKAFDAKS---------------GKELW  521 (582)
T ss_dssp             SEEEEEECTTT------CCEEEEEEESS-CCCSCCEEETTT-EEEEECTTSEEEEEETTT---------------CCEEE
T ss_pred             cceEEEEECCC------CCEEEEecCCC-CCcccceEeCCC-EEEEECCCCcEEEEECCC---------------CCEEE
Confidence            57899999998      88877765332 222212222344 344789999999999988               33344


Q ss_pred             eecCCCcce-eeEEEccCCCeEEEEe
Q 021657          238 QHAGHRDKV-VDFHWNASDPWTVVSV  262 (309)
Q Consensus       238 ~~~~~~~~v-~~~~~~~~~~~~~~s~  262 (309)
                      ++....... .-+.+..++..++++.
T Consensus       522 ~~~~~~g~~a~P~~y~~~G~qYv~~~  547 (582)
T 1flg_A          522 KFQTGSGIVSPPITWEQDGEQYLGVT  547 (582)
T ss_dssp             EEECSSCCCSCCEEEEETTEEEEEEE
T ss_pred             EecCCCCcccCceEEEECCEEEEEEE
Confidence            444322211 2355666666555543

>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A*

Probab=97.96  E-value=0.0089  Score=53.32  Aligned_cols=203  Identities=11%  Similarity=0.001  Sum_probs=117.4

Q ss_pred             cceEEEEECCCCCEEEEecCCCcEEEEeCCccccccccCCccccccCCCCceeecCCCCCCCCcccCCCCCcCccccccc
Q 021657           10 NAEFALAMCPTEPYVLSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNG   89 (309)
Q Consensus        10 ~~V~~~~~~~~~~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   89 (309)
                      ..|.++..+++|. |..|+.++-|..|+..+.........                              .......  -
T Consensus       357 ~~V~~i~~d~~g~-lWiGt~~~Gl~~~~~~~~~~~~~~~~------------------------------~~~~~~~--l  403 (795)
T 4a2l_A          357 NVVSCIVEDKDKN-LWIGTNDGGLNLYNPITQRFTSYTLQ------------------------------EDESARG--I  403 (795)
T ss_dssp             SSEEEEEECTTSC-EEEEESSSCEEEECTTTCCEEEECCC------------------------------------C--C
T ss_pred             CeeEEEEECCCCC-EEEEECCCCeEEEcCCCCcEEEEecC------------------------------CCCcccC--C
Confidence            3689999988886 55577777888888764321100000                              0000000  0


Q ss_pred             ccCCeEEEEEecCCCcEEEEEcCCCeEEEEEcCCCCcceEEEee----ccCCceeEEEeccCCCCeEEEEcCCCcEEEEe
Q 021657           90 HEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPVIKVEK----AHDADLHCVDWNPLDDNLILTGSADNSVRMFD  165 (309)
Q Consensus        90 ~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~----~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d  165 (309)
                      ....|.++...+++ .+|..|+.++-|..+|..+++  ......    .....|.++...+ ++.+.+.. .+ -+..||
T Consensus       404 ~~~~v~~i~~d~~g-~~lWigt~~~Gl~~~d~~~~~--~~~~~~~~~~l~~~~v~~i~~d~-~g~lwigt-~~-Gl~~~~  477 (795)
T 4a2l_A          404 GSNNIKAVYVDEKK-SLVYIGTHAGGLSILHRNSGQ--VENFNQRNSQLVNENVYAILPDG-EGNLWLGT-LS-ALVRFN  477 (795)
T ss_dssp             SCSCEEEEEEETTT-TEEEEEETTTEEEEEETTTCC--EEEECTTTSCCSCSCEEEEEECS-SSCEEEEE-SS-CEEEEE
T ss_pred             CCccEEEEEEcCCC-CEEEEEeCcCceeEEeCCCCc--EEEeecCCCCcCCCeeEEEEECC-CCCEEEEe-cC-ceeEEe
Confidence            23568899888877 535566776779999988766  222211    1245788998887 66655544 44 488899


Q ss_pred             cCCCCCCCCCCceeeecc-------CCCCeeEEEEecCCCcEEEEecCCCcEEEEeCCcccccccCCCCCcCCCCceeee
Q 021657          166 RRNLTSNGVGSPINKFEG-------HSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQ  238 (309)
Q Consensus       166 ~~~~~~~~~~~~~~~~~~-------~~~~v~~~~~~~~~~~l~~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~  238 (309)
                      ..+      ++. ..+..       ....|.++...++|. +. .|+. +-+..||..........  ..        ..
T Consensus       478 ~~~------~~~-~~~~~~~~~~~~~~~~i~~i~~d~~g~-lW-igt~-~Gl~~~~~~~~~~~~~~--~~--------~~  537 (795)
T 4a2l_A          478 PEQ------RSF-TTIEKEKDGTPVVSKQITTLFRDSHKR-LW-IGGE-EGLSVFKQEGLDIQKAS--IL--------PV  537 (795)
T ss_dssp             TTT------TEE-EECCBCTTCCBCCCCCEEEEEECTTCC-EE-EEES-SCEEEEEEETTEEEECC--CS--------CS
T ss_pred             CCC------CeE-EEccccccccccCCceEEEEEECCCCC-EE-EEeC-CceEEEeCCCCeEEEec--CC--------CC
Confidence            876      332 22211       235689999999988 44 4444 45888887651110000  00        00


Q ss_pred             ecCCCcceeeEEEccCCCeEEEEecCCCCCCCCCCeEEEEEcc
Q 021657          239 HAGHRDKVVDFHWNASDPWTVVSVSDDCDSTGGGGTLQIWRMS  281 (309)
Q Consensus       239 ~~~~~~~v~~~~~~~~~~~~~~s~s~d~~s~~~dg~v~vw~~~  281 (309)
                      .......|.++...+++...+.+.          +-|..||..
T Consensus       538 ~~l~~~~i~~i~~d~~g~lWigT~----------~Gl~~~d~~  570 (795)
T 4a2l_A          538 SNVTKLFTNCIYEASNGIIWVGTR----------EGFYCFNEK  570 (795)
T ss_dssp             CGGGGSCEEEEEECTTSCEEEEES----------SCEEEEETT
T ss_pred             CCCCCCeeEEEEECCCCCEEEEeC----------CCceeECCC
Confidence            011345688899888777555321          246777765

>4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus}

Probab=97.95  E-value=0.0014  Score=53.94  Aligned_cols=158  Identities=8%  Similarity=0.172  Sum_probs=92.1

Q ss_pred             CeEEEEEecC--CCcEEEEEcCCCeEEEEEcCCCCcceEEEeeccCCceeEEEeccCCCCeEEEEcCC---C-cEEEEec
Q 021657           93 TVEDVTFCPS--SAQEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSAD---N-SVRMFDR  166 (309)
Q Consensus        93 ~v~~~~~~~~--~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d---g-~i~i~d~  166 (309)
                      ....++|+|+  ++.++++ ...+.|+.+|..++.   +..+.........+++++ +++++++-...   . .+..++.
T Consensus       140 ~P~gvavd~~s~~g~Lyv~-D~~~~I~~id~~~g~---v~~~~~~~~~P~giavd~-dG~lyVad~~~~~~~~gv~~~~~  214 (433)
T 4hw6_A          140 NIWRMMFDPNSNYDDLYWV-GQRDAFRHVDFVNQY---VDIKTTNIGQCADVNFTL-NGDMVVVDDQSSDTNTGIYLFTR  214 (433)
T ss_dssp             CCCEEEECTTTTTCEEEEE-CBTSCEEEEETTTTE---EEEECCCCSCEEEEEECT-TCCEEEEECCSCTTSEEEEEECG
T ss_pred             CCceEEEccccCCCEEEEE-eCCCCEEEEECCCCE---EEEeecCCCCccEEEECC-CCCEEEEcCCCCcccceEEEEEC
Confidence            4568999985  3254444 433889999987666   333334445688999999 88855554321   1 2333333


Q ss_pred             CCCCCCCCCCceeeeccCCCCeeEEEEecCCCcEEEEecCCCcEEEEeCCcccccccCCCCCcCCCCceeeeecCCCcce
Q 021657          167 RNLTSNGVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKV  246 (309)
Q Consensus       167 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v  246 (309)
                      ...     ......+. .-.....++++|++..|+++-..++.|+.+|... +...           ..+... +....-
T Consensus       215 ~~~-----~~~~~~~~-~~~~P~giavd~~~G~lyv~d~~~~~V~~~d~~~-g~~~-----------~~~~~~-~~~~~~  275 (433)
T 4hw6_A          215 ASG-----FTERLSLC-NARGAKTCAVHPQNGKIYYTRYHHAMISSYDPAT-GTLT-----------EEEVMM-DTKGSN  275 (433)
T ss_dssp             GGT-----TCCEEEEE-ECSSBCCCEECTTTCCEEECBTTCSEEEEECTTT-CCEE-----------EEEEEC-SCCSSC
T ss_pred             CCC-----eecccccc-ccCCCCEEEEeCCCCeEEEEECCCCEEEEEECCC-CeEE-----------EEEecc-CCCCCc
Confidence            221     11011222 2234567899994444676766788899998864 1110           011111 111223


Q ss_pred             eeEEEccCCCeEEEEecCCCCCCCCCCeEEEEEcc
Q 021657          247 VDFHWNASDPWTVVSVSDDCDSTGGGGTLQIWRMS  281 (309)
Q Consensus       247 ~~~~~~~~~~~~~~s~s~d~~s~~~dg~v~vw~~~  281 (309)
                      ..++|+|++.+|+++-...       +.|+.+++.
T Consensus       276 ~~ia~dpdG~~LYvad~~~-------~~I~~~~~d  303 (433)
T 4hw6_A          276 FHIVWHPTGDWAYIIYNGK-------HCIYRVDYN  303 (433)
T ss_dssp             EEEEECTTSSEEEEEETTT-------TEEEEEEBC
T ss_pred             ccEEEeCCCCEEEEEeCCC-------CEEEEEeCC
Confidence            4699999998777765554       789998875

>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A

Probab=97.85  E-value=0.0012  Score=57.37  Aligned_cols=28  Identities=21%  Similarity=0.398  Sum_probs=22.0

Q ss_pred             EEEECCCCCEEEEecC-CCcEEEEeCCcc
Q 021657           14 ALAMCPTEPYVLSGGK-DKSVVLWSIQDH   41 (309)
Q Consensus        14 ~~~~~~~~~~l~t~~~-dg~i~vwd~~~~   41 (309)
                      ++++.+++++++.|+. +..+.+||..+.
T Consensus       247 ~~~~~~~g~lyv~GG~~~~~v~~yd~~t~  275 (656)
T 1k3i_A          247 GISMDGNGQIVVTGGNDAKKTSLYDSSSD  275 (656)
T ss_dssp             EEEECTTSCEEEECSSSTTCEEEEEGGGT
T ss_pred             cccCCCCCCEEEeCCCCCCceEEecCcCC
Confidence            4677889999999884 557999998754

>3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron}

Probab=97.82  E-value=0.0015  Score=54.11  Aligned_cols=124  Identities=12%  Similarity=0.153  Sum_probs=74.2

Q ss_pred             CCeEEEEE-------ecCCCcEEEEEcCCC------eEEEEEcCC-CCcce---EEEeeccCCceeEEEeccCCCCeEEE
Q 021657           92 DTVEDVTF-------CPSSAQEFCSVGDDS------CLILWDARV-GTSPV---IKVEKAHDADLHCVDWNPLDDNLILT  154 (309)
Q Consensus        92 ~~v~~~~~-------~~~~~~~l~s~~~dg------~i~iwd~~~-~~~~~---~~~~~~~~~~v~~~~~~~~~~~~l~~  154 (309)
                      .....++|       ++++..++++-..++      .|.+.+... +....   ...+... .....++++|.++.++++
T Consensus       186 ~~p~~ia~~~~~~~~d~~G~~lyvad~~~~~~~~~~~V~~i~r~~~G~~~~~~~~~~v~~~-~~p~giavdp~~g~LYvt  264 (496)
T 3kya_A          186 NRIRSIAFNKKIEGYADEAEYMIVAIDYDGKGDESPSVYIIKRNADGTFDDRSDIQLIAAY-KQCNGATIHPINGELYFN  264 (496)
T ss_dssp             SBEEEEEECCCBTTTBCTTCEEEEEECCCTTGGGEEEEEEEECCTTSCCSTTSCEEEEEEE-SCCCCEEECTTTCCEEEE
T ss_pred             CCCcEEEEeecccccCCCCCEEEEEeCCCCCcccCceEEEEecCCCCceeecccceeeccC-CCceEEEEcCCCCeEEEE
Confidence            35789999       999844555544442      266666433 12110   0122222 244678899955666777


Q ss_pred             EcCCCcEEEEecC-------CCCCC------CCC--CceeeeccCCCCeeEEEEecCCCcEEEEecCCCcEEEEeCCc
Q 021657          155 GSADNSVRMFDRR-------NLTSN------GVG--SPINKFEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEK  217 (309)
Q Consensus       155 ~~~dg~i~i~d~~-------~~~~~------~~~--~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~dg~i~iwd~~~  217 (309)
                      -..++.|..+|+.       +....      ..+  +.+... ......+.|+|+|+|..|+++-...+.|+.++...
T Consensus       265 d~~~g~V~r~d~~~~~~~~~tg~~~tp~~~~~~g~~~~l~~~-~~~~~p~~ia~~p~G~~lYvaD~~~h~I~kid~dg  341 (496)
T 3kya_A          265 SYEKGQVFRLDLVDYFKTIKNGGSWDPIVKNNPNTFKQLFTI-ADPSWEFQIFIHPTGKYAYFGVINNHYFMRSDYDE  341 (496)
T ss_dssp             ETTTTEEEEECHHHHHHHHHTTCCCCCBGGGCTTTEEEEEEC-SSSSCCEEEEECTTSSEEEEEETTTTEEEEEEEET
T ss_pred             ECCCCEEEEEecccccccccCceeecccccccccccceeEec-CCCCCceEEEEcCCCCEEEEEeCCCCEEEEEecCC
Confidence            7788899999997       42110      000  011112 12344678999999997777777888999876543

>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A*

Probab=97.76  E-value=0.016  Score=49.98  Aligned_cols=117  Identities=4%  Similarity=-0.049  Sum_probs=79.0

Q ss_pred             CCeEEEEEecCCCcEEEEEcCCCeEEEEEcCCCCcceEEEeeccCCceeEEEeccCCCCeEEEEcC-CCcEEEEecCCCC
Q 021657           92 DTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSA-DNSVRMFDRRNLT  170 (309)
Q Consensus        92 ~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~-dg~i~i~d~~~~~  170 (309)
                      .....+++...+++++++-+..+.|.+.++....  ........-.....++++|..+.++++-.. .+.|...++..  
T Consensus       392 ~~p~GlAvD~~~~~lY~tD~~~~~I~v~~~~G~~--~~~l~~~~l~~P~~iavdp~~G~ly~tD~g~~~~I~r~~~dG--  467 (619)
T 3s94_A          392 AHPDGIAVDWVARNLYWTDTGTDRIEVTRLNGTM--RKILISEDLEEPRAIVLDPMVGYMYWTDWGEIPKIERAALDG--  467 (619)
T ss_dssp             SCCCEEEEETTTTEEEEEETTTTEEEEEETTSCS--CEEEECTTCCSEEEEEEETTTTEEEEEECSSSCEEEEEETTS--
T ss_pred             CCcCceEEecccCcEEEEeCCCCcEEEEeCCCCe--EEEEEECCCCCeeeEEEEcCCCcEEEecCCCCCEEEEEccCC--
Confidence            3566889987665778887788999999987544  222233344568899999933555555322 35677666653  


Q ss_pred             CCCCCCceeee-ccCCCCeeEEEEecCCCcEEEEecCCCcEEEEeCCc
Q 021657          171 SNGVGSPINKF-EGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEK  217 (309)
Q Consensus       171 ~~~~~~~~~~~-~~~~~~v~~~~~~~~~~~l~~~~~~dg~i~iwd~~~  217 (309)
                           .....+ ...-...+.|++++++..|+++-...+.|..+++..
T Consensus       468 -----~~~~~l~~~~l~~P~GlalD~~~~~LY~aD~~~~~I~~~~~dG  510 (619)
T 3s94_A          468 -----SDRVVLVNTSLGWPNGLALDYDEGKIYWGDAKTDKIEVMNTDG  510 (619)
T ss_dssp             -----CSCEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEESSS
T ss_pred             -----CccEEEEeCCCCCCeeeEEcccCCEEEEEECCCCEEEEEecCC
Confidence                 222223 223456789999998877887777788899999865

>1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A*

Probab=97.73  E-value=0.008  Score=51.50  Aligned_cols=52  Identities=17%  Similarity=0.138  Sum_probs=34.5

Q ss_pred             CCcEEEEecCCCCCCCCCCceeeeccCCCCeeEEEEecCCCcEEEEecCCCcEEEEeCCc
Q 021657          158 DNSVRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEK  217 (309)
Q Consensus       158 dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~dg~i~iwd~~~  217 (309)
                      .|.|.-||+.+      ++.+.+.... .+...-.+...+..+| .++.|+.++.||.++
T Consensus       452 ~G~l~A~D~~t------G~~~W~~~~~-~~~~~g~~~tagg~vf-~gt~dg~l~A~D~~t  503 (599)
T 1w6s_A          452 LGQIKAYNAIT------GDYKWEKMER-FAVWGGTMATAGDLVF-YGTLDGYLKARDSDT  503 (599)
T ss_dssp             CEEEEEECTTT------CCEEEEEEES-SCCCSBCEEETTTEEE-EECTTSEEEEEETTT
T ss_pred             cCeEEEEECCC------CCEEeEecCC-CCccCcceEecCCEEE-EECCCCeEEEEECCC
Confidence            47888899988      7777776522 2222111233455444 688999999999998

>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron}

Probab=97.71  E-value=0.018  Score=51.20  Aligned_cols=197  Identities=8%  Similarity=0.020  Sum_probs=113.8

Q ss_pred             cceEEEEECCCCCEEEEecCCCcEEEEeCCccccccccCCccccccCCCCceeecCCCCCCCCcccCCCCCcCccccccc
Q 021657           10 NAEFALAMCPTEPYVLSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNG   89 (309)
Q Consensus        10 ~~V~~~~~~~~~~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   89 (309)
                      ..|.++...++|. |..|+.++-|..||..+.........                                     -..
T Consensus       363 ~~v~~i~~d~~g~-lWigt~~~Gl~~~~~~~~~~~~~~~~-------------------------------------~~~  404 (781)
T 3v9f_A          363 KVVSSVCDDGQGK-LWIGTDGGGINVFENGKRVAIYNKEN-------------------------------------REL  404 (781)
T ss_dssp             SCEEEEEECTTSC-EEEEEBSSCEEEEETTEEEEECC------------------------------------------C
T ss_pred             cceEEEEEcCCCC-EEEEeCCCcEEEEECCCCeEEEccCC-------------------------------------CCC
Confidence            3689999988876 45566666788888764321100000                                     011


Q ss_pred             ccCCeEEEEEecCCCcEEEEEcCCCeEEEEEcCCCCcceEEEee--ccCCceeEEEeccCCCCeEEEEcCCCcEEEEecC
Q 021657           90 HEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPVIKVEK--AHDADLHCVDWNPLDDNLILTGSADNSVRMFDRR  167 (309)
Q Consensus        90 ~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~--~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~  167 (309)
                      ....|.++...+++ . |..|+.++-|..+|..+++  ......  .....|.++...+ ++.+ ..|+. +-|..||..
T Consensus       405 ~~~~v~~i~~d~~g-~-lWigt~~~Gl~~~~~~~~~--~~~~~~~~~~~~~v~~i~~d~-~g~l-wigt~-~Gl~~~~~~  477 (781)
T 3v9f_A          405 LSNSVLCSLKDSEG-N-LWFGTYLGNISYYNTRLKK--FQIIELEKNELLDVRVFYEDK-NKKI-WIGTH-AGVFVIDLA  477 (781)
T ss_dssp             CCSBEEEEEECTTS-C-EEEEETTEEEEEECSSSCE--EEECCSTTTCCCCEEEEEECT-TSEE-EEEET-TEEEEEESS
T ss_pred             CCcceEEEEECCCC-C-EEEEeccCCEEEEcCCCCc--EEEeccCCCCCCeEEEEEECC-CCCE-EEEEC-CceEEEeCC
Confidence            23568888887776 4 4456666678889876655  222211  1345788998887 5654 44455 458889987


Q ss_pred             CCCCCCCCCceeeecc-----CCCCeeEEEEecCCCcEEEEecCCCcEEEEeCCcccccccCCCCCcCCCCceeeee-cC
Q 021657          168 NLTSNGVGSPINKFEG-----HSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQH-AG  241 (309)
Q Consensus       168 ~~~~~~~~~~~~~~~~-----~~~~v~~~~~~~~~~~l~~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~-~~  241 (309)
                      +      ++.......     ....|.++...++|. +. .|+.++-+..||.... +...            +... .-
T Consensus       478 ~------~~~~~~~~~~~~~~~~~~i~~i~~d~~g~-lW-igt~~~Gl~~~~~~~~-~~~~------------~~~~~~l  536 (781)
T 3v9f_A          478 S------KKVIHHYDTSNSQLLENFVRSIAQDSEGR-FW-IGTFGGGVGIYTPDMQ-LVRK------------FNQYEGF  536 (781)
T ss_dssp             S------SSCCEEECTTTSSCSCSCEEEEEECTTCC-EE-EEESSSCEEEECTTCC-EEEE------------ECTTTTC
T ss_pred             C------CeEEecccCcccccccceeEEEEEcCCCC-EE-EEEcCCCEEEEeCCCC-eEEE------------ccCCCCC
Confidence            6      332221111     135789999999888 44 5555445777887541 1100            0000 01


Q ss_pred             CCcceeeEEEccCCCeEEEEecCCCCCCCCCCeEEEEEcc
Q 021657          242 HRDKVVDFHWNASDPWTVVSVSDDCDSTGGGGTLQIWRMS  281 (309)
Q Consensus       242 ~~~~v~~~~~~~~~~~~~~s~s~d~~s~~~dg~v~vw~~~  281 (309)
                      ....|.++...+++...+.+.         +|.+..||..
T Consensus       537 ~~~~i~~i~~d~~g~lWi~T~---------~Glv~~~d~~  567 (781)
T 3v9f_A          537 CSNTINQIYRSSKGQMWLATG---------EGLVCFPSAR  567 (781)
T ss_dssp             SCSCEEEEEECTTSCEEEEET---------TEEEEESCTT
T ss_pred             CCCeeEEEEECCCCCEEEEEC---------CCceEEECCC
Confidence            234688888888776555321         2544666654

>3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A*

Probab=97.63  E-value=0.015  Score=46.08  Aligned_cols=160  Identities=11%  Similarity=0.091  Sum_probs=91.5

Q ss_pred             CeEEEEEecCCCcEEEEEc------------CCCeEEEEEcCCCCcce-EEEeec-----cCCceeEEEeccC-CC--Ce
Q 021657           93 TVEDVTFCPSSAQEFCSVG------------DDSCLILWDARVGTSPV-IKVEKA-----HDADLHCVDWNPL-DD--NL  151 (309)
Q Consensus        93 ~v~~~~~~~~~~~~l~s~~------------~dg~i~iwd~~~~~~~~-~~~~~~-----~~~~v~~~~~~~~-~~--~~  151 (309)
                      ...++...|+| ..+++++            .+|.|.++|..+..... ...+.+     .......+.+.+. ++  .+
T Consensus        51 G~EDi~~~~~G-~~~~s~~~~~pg~~~~~~~~~G~I~~~d~~~~~~~~~~l~~~g~~~~~~~f~PhGi~~~~d~dg~~~L  129 (355)
T 3sre_A           51 GSEDLEILPNG-LAFISSGLKYPGIMSFDPDKSGKILLMDLNEKEPAVSELEIIGNTLDISSFNPHGISTFIDDDNTVYL  129 (355)
T ss_dssp             CCCEEEECTTS-EEEEEECCC-----------CCEEEEEETTSSSCCEEECEEECSSCCGGGCCEEEEEEEECTTCCEEE
T ss_pred             CcceeEEcCCC-eEEEEeccccCCCcccCCCCCCeEEEEecCCCCCceEEEEccCCCCCcCceeeeeeEEEECCCCcEEE
Confidence            45677788877 5555542            68999999987432111 112222     2235677777551 23  24


Q ss_pred             EEEEcC--CCcEEEEecCCCCCCCCCCceeeeccC-CCCeeEEEEecCCCcEEEEecC-----------------CCcEE
Q 021657          152 ILTGSA--DNSVRMFDRRNLTSNGVGSPINKFEGH-SAAVLCVQWSPDKSSVFGSSAE-----------------DGLLN  211 (309)
Q Consensus       152 l~~~~~--dg~i~i~d~~~~~~~~~~~~~~~~~~~-~~~v~~~~~~~~~~~l~~~~~~-----------------dg~i~  211 (309)
                      +++-..  +.+|.+|++.....  ....+.++.+. -...+.+.+.++|.+ +++...                 .|.|.
T Consensus       130 ~Vvnh~~~~s~ielf~~d~~~~--~~~~~~~~~g~~~~~pND~~v~~~G~f-yvt~~~~ftd~~~~~~e~~~~~~~g~vy  206 (355)
T 3sre_A          130 LVVNHPGSSSTVEVFKFQEEEK--SLLHLKTIRHKLLPSVNDIVAVGPEHF-YATNDHYFIDPYLKSWEMHLGLAWSFVT  206 (355)
T ss_dssp             EEEECSTTCCEEEEEEEETTTT--EEEEEEEECCTTCSSEEEEEEEETTEE-EEEESCSCSSHHHHHHHHHTTCCCEEEE
T ss_pred             EEEECCCCCCeEEEEEEECCCC--EEEEEeccccCCCCCCceEEEeCCCCE-EecCCcEeCCcccccchhhccCCccEEE
Confidence            455444  56788888765210  02233344432 235789999999984 445431                 13333


Q ss_pred             EEeCCcccccccCCCCCcCCCCceeeeecCCCcceeeEEEccCCCeEEEEecCCCCCCCCCCeEEEEEcc
Q 021657          212 IWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKVVDFHWNASDPWTVVSVSDDCDSTGGGGTLQIWRMS  281 (309)
Q Consensus       212 iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~s~d~~s~~~dg~v~vw~~~  281 (309)
                      -+|...                  +......-...+.++|+|++..++++-+..       +.|..|++.
T Consensus       207 r~d~~~------------------~~~~~~~l~~pNGia~spDg~~lYvadt~~-------~~I~~~~~~  251 (355)
T 3sre_A          207 YYSPND------------------VRVVAEGFDFANGINISPDGKYVYIAELLA-------HKIHVYEKH  251 (355)
T ss_dssp             EECTTC------------------CEEEEEEESSEEEEEECTTSSEEEEEEGGG-------TEEEEEEEC
T ss_pred             EEECCe------------------EEEeecCCcccCcceECCCCCEEEEEeCCC-------CeEEEEEEC
Confidence            333211                  111111223468999999999988877655       899999987

>3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A

Probab=97.61  E-value=0.0082  Score=47.17  Aligned_cols=123  Identities=11%  Similarity=0.168  Sum_probs=80.3

Q ss_pred             CCeEEEEE--ecC-CCcEEEEEcCCCeEEEEEcCC---CC--cceEEEeeccCCceeEEEeccCCCCeEEEEcCCCcEEE
Q 021657           92 DTVEDVTF--CPS-SAQEFCSVGDDSCLILWDARV---GT--SPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRM  163 (309)
Q Consensus        92 ~~v~~~~~--~~~-~~~~l~s~~~dg~i~iwd~~~---~~--~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i  163 (309)
                      ..+..+++  +|. +..+++....+|.+..|++..   +.  ...+..+.. ...+-.+...+ ....|+.+-.+.-|..
T Consensus       128 ~~pyGlcly~~~~~g~~yafV~~k~G~~~q~~l~~~~~g~~~~~lVR~f~l-gsq~EgcvvDd-~~g~Lyv~eEd~GIw~  205 (355)
T 3amr_A          128 NEVYGFTLYHSQKTGKYYAMVTGKEGEFEQYELKADKNGYISGKKVRAFKM-NSQTEGMAADD-EYGRLYIAEEDEAIWK  205 (355)
T ss_dssp             SSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSCEEEEEEEEEEC-SSCEEEEEEET-TTTEEEEEETTTEEEE
T ss_pred             CCeeEEEEEecCCCCcEEEEEECCCCeEEEEEEEeCCCCcccceEEEEecC-CCCcceEEEcC-CCCeEEEecccceEEE
Confidence            45666777  664 334677888899999999843   21  123444433 45788888998 7888888888866766


Q ss_pred             EecCCCCCCCCCCceeeec--cCCCCeeEEEE--ecCCC-cEEEEecCCCcEEEEeCCc
Q 021657          164 FDRRNLTSNGVGSPINKFE--GHSAAVLCVQW--SPDKS-SVFGSSAEDGLLNIWDYEK  217 (309)
Q Consensus       164 ~d~~~~~~~~~~~~~~~~~--~~~~~v~~~~~--~~~~~-~l~~~~~~dg~i~iwd~~~  217 (309)
                      ||.+-... ...+.+..+.  .....+..|++  .++++ +|++++-.+.++.+||...
T Consensus       206 ~da~p~~~-~~~~~v~~~~~g~l~aDvEGLai~~~~~g~gyLivSsQG~~s~~Vydr~~  263 (355)
T 3amr_A          206 FSAEPDGG-SNGTVIDRADGRHLTRDIEGLTIYYAADGKGYLMASSQGNSSYAIYDRQG  263 (355)
T ss_dssp             EECSTTSC-SCCEEEEEBSSSSBCSCEEEEEEEECGGGCEEEEEEEGGGTEEEEEESST
T ss_pred             EeCCcCCC-CCceEEEEecCCccccCcceEEEEecCCCCEEEEEEcCCCCEEEEEECCC
Confidence            67542110 0033444442  12346888888  45566 7888887889999999973

>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A

Probab=97.58  E-value=0.0022  Score=55.82  Aligned_cols=105  Identities=14%  Similarity=0.073  Sum_probs=60.1

Q ss_pred             EEEEEecCCCcEEEEEcCCC-----------eEEEEEcCCCCcceEE--EeeccCCceeEEEeccCCCCeEEEEcCC---
Q 021657           95 EDVTFCPSSAQEFCSVGDDS-----------CLILWDARVGTSPVIK--VEKAHDADLHCVDWNPLDDNLILTGSAD---  158 (309)
Q Consensus        95 ~~~~~~~~~~~~l~s~~~dg-----------~i~iwd~~~~~~~~~~--~~~~~~~~v~~~~~~~~~~~~l~~~~~d---  158 (309)
                      .++.|...+.++++.|+.++           .|.+||..+.......  .+ .....-.++...| ++++++.|+.+   
T Consensus       402 ~av~~~~~~~~i~v~GG~~~~~~~~~~~~~~~v~~yd~~~~~W~~~~~~~m-p~~R~~~~~~~l~-~g~i~v~GG~~~~~  479 (656)
T 1k3i_A          402 NAVMYDAVKGKILTFGGSPDYQDSDATTNAHIITLGEPGTSPNTVFASNGL-YFARTFHTSVVLP-DGSTFITGGQRRGI  479 (656)
T ss_dssp             EEEEEETTTTEEEEECCBSSSSSSBCCCCEEEEECCSTTSCCEEEECTTCC-SSCCBSCEEEECT-TSCEEEECCBSBCC
T ss_pred             ceEeccCCCCeEEEEeCCCCCCCCCcCCcceEEEcCCCCCCCeeEEccCCC-CCCcccCCeEECC-CCCEEEECCcccCc
Confidence            44455443447888887543           6788888776632221  11 1122234556677 88999999864   


Q ss_pred             --------CcEEEEecCCCCCCCCCCceeeeccCCCCeeEEEEecCCCcEEEEecC
Q 021657          159 --------NSVRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAE  206 (309)
Q Consensus       159 --------g~i~i~d~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~  206 (309)
                              ..+.+||..+..    ...+..+........+..+.|+++ +++.|+.
T Consensus       480 ~~~~~~~~~~v~~ydp~t~~----W~~~~~~~~~R~~hs~a~ll~dg~-v~v~GG~  530 (656)
T 1k3i_A          480 PFEDSTPVFTPEIYVPEQDT----FYKQNPNSIVRVYHSISLLLPDGR-VFNGGGG  530 (656)
T ss_dssp             TTCCCSBCCCCEEEEGGGTE----EEECCCCSSCCCTTEEEEECTTSC-EEEEECC
T ss_pred             CcCCCCcccceEEEcCCCCc----eeecCCCCCccccccHhhcCCCcE-EEecCCC
Confidence                    468999987622    222222222222333455678998 5667774

>3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A*

Probab=97.56  E-value=0.019  Score=45.48  Aligned_cols=144  Identities=8%  Similarity=0.010  Sum_probs=83.1

Q ss_pred             CeEEEEEec--CCCcEEEEE-cC--CCeEEEEEcCCCCc--ceEEEeecc-CCceeEEEeccCCCCeEEEEcC-------
Q 021657           93 TVEDVTFCP--SSAQEFCSV-GD--DSCLILWDARVGTS--PVIKVEKAH-DADLHCVDWNPLDDNLILTGSA-------  157 (309)
Q Consensus        93 ~v~~~~~~~--~~~~~l~s~-~~--dg~i~iwd~~~~~~--~~~~~~~~~-~~~v~~~~~~~~~~~~l~~~~~-------  157 (309)
                      ....+.+.+  ++..+|+.+ ..  +.+|.+|++.....  .....+.+. -...+.+.+.+ ++.++++...       
T Consensus       113 ~PhGi~~~~d~dg~~~L~Vvnh~~~~s~ielf~~d~~~~~~~~~~~~~g~~~~~pND~~v~~-~G~fyvt~~~~ftd~~~  191 (355)
T 3sre_A          113 NPHGISTFIDDDNTVYLLVVNHPGSSSTVEVFKFQEEEKSLLHLKTIRHKLLPSVNDIVAVG-PEHFYATNDHYFIDPYL  191 (355)
T ss_dssp             CEEEEEEEECTTCCEEEEEEECSTTCCEEEEEEEETTTTEEEEEEEECCTTCSSEEEEEEEE-TTEEEEEESCSCSSHHH
T ss_pred             eeeeeEEEECCCCcEEEEEEECCCCCCeEEEEEEECCCCEEEEEeccccCCCCCCceEEEeC-CCCEEecCCcEeCCccc
Confidence            455666655  343334443 33  56788888765432  122222222 23578899999 8887777541       


Q ss_pred             ----------CCcEEEEecCCCCCCCCCCceeeeccCCCCeeEEEEecCCCcEEEEecCCCcEEEEeCCcccccccCCCC
Q 021657          158 ----------DNSVRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPR  227 (309)
Q Consensus       158 ----------dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~dg~i~iwd~~~~~~~~~~~~~  227 (309)
                                .|.|.-+|..        + +..+...-...+.++|+||++.++++-+..+.|..|++...+....    
T Consensus       192 ~~~e~~~~~~~g~vyr~d~~--------~-~~~~~~~l~~pNGia~spDg~~lYvadt~~~~I~~~~~~~~g~l~~----  258 (355)
T 3sre_A          192 KSWEMHLGLAWSFVTYYSPN--------D-VRVVAEGFDFANGINISPDGKYVYIAELLAHKIHVYEKHANWTLTP----  258 (355)
T ss_dssp             HHHHHHTTCCCEEEEEECTT--------C-CEEEEEEESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSCEEE----
T ss_pred             ccchhhccCCccEEEEEECC--------e-EEEeecCCcccCcceECCCCCEEEEEeCCCCeEEEEEECCCCcEec----
Confidence                      2444444432        1 2222222345789999999998888888889999999875332211    


Q ss_pred             CcCCCCceeeeecCCCcceeeEEEcc-CCCeEE
Q 021657          228 TTNYPAGLFFQHAGHRDKVVDFHWNA-SDPWTV  259 (309)
Q Consensus       228 ~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~~~  259 (309)
                           .. .+.   .....-.++..+ +|...+
T Consensus       259 -----~~-~~~---~~g~PDGi~vD~e~G~lwv  282 (355)
T 3sre_A          259 -----LR-VLS---FDTLVDNISVDPVTGDLWV  282 (355)
T ss_dssp             -----EE-EEE---CSSEEEEEEECTTTCCEEE
T ss_pred             -----CE-EEe---CCCCCceEEEeCCCCcEEE
Confidence                 01 111   134567788888 466544

>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens}

Probab=97.46  E-value=0.022  Score=44.07  Aligned_cols=103  Identities=11%  Similarity=0.115  Sum_probs=53.8

Q ss_pred             cEEEEEcCCC-----eEEEEEcCCCCcceEEEeeccCCceeEEEeccCCCCeEEEEcCC-------CcEEEEecCCCCCC
Q 021657          105 QEFCSVGDDS-----CLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSAD-------NSVRMFDRRNLTSN  172 (309)
Q Consensus       105 ~~l~s~~~dg-----~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d-------g~i~i~d~~~~~~~  172 (309)
                      .+++.|+.++     .+.+||+.+.+......+...... .+++..  ++.+++.|+.+       ..+.+||+.+..  
T Consensus       110 ~iyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~-~~~~~~--~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~--  184 (302)
T 2xn4_A          110 LLYAVGGFDGSTGLSSVEAYNIKSNEWFHVAPMNTRRSS-VGVGVV--GGLLYAVGGYDVASRQCLSTVECYNATTNE--  184 (302)
T ss_dssp             EEEEEEEECSSCEEEEEEEEETTTTEEEEECCCSSCCBS-CEEEEE--TTEEEEECCEETTTTEECCCEEEEETTTTE--
T ss_pred             EEEEEcCCCCCccCceEEEEeCCCCeEeecCCCCCcccC-ceEEEE--CCEEEEEeCCCCCCCccccEEEEEeCCCCc--
Confidence            6777776543     577889877764332222211111 222222  56777777653       358889987632  


Q ss_pred             CCCCceeeeccCCCCeeEEEEecCCCcEEEEecCC-----CcEEEEeCCc
Q 021657          173 GVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAED-----GLLNIWDYEK  217 (309)
Q Consensus       173 ~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~d-----g~i~iwd~~~  217 (309)
                        ...+..+....... +++.. ++. +++.|+.+     ..+.+||+.+
T Consensus       185 --W~~~~~~p~~r~~~-~~~~~-~~~-iyv~GG~~~~~~~~~~~~yd~~~  229 (302)
T 2xn4_A          185 --WTYIAEMSTRRSGA-GVGVL-NNL-LYAVGGHDGPLVRKSVEVYDPTT  229 (302)
T ss_dssp             --EEEECCCSSCCBSC-EEEEE-TTE-EEEECCBSSSSBCCCEEEEETTT
T ss_pred             --EEECCCCccccccc-cEEEE-CCE-EEEECCCCCCcccceEEEEeCCC
Confidence              22222222111122 22222 344 67777654     3688899876

>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron}

Probab=97.46  E-value=0.055  Score=48.19  Aligned_cols=142  Identities=10%  Similarity=0.087  Sum_probs=84.0

Q ss_pred             CCeEEEEEecCCCcEEEEEcCCCeEEEEEcCCCCcceEEE-eeccCCceeEEEeccCCCCeEEEEcCCCcEEEEecCCCC
Q 021657           92 DTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPVIKV-EKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLT  170 (309)
Q Consensus        92 ~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~-~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~  170 (309)
                      ..|.++...+++ . |..|+.++-|..||..++....... .......|.++...+ ++. |..|+.++-+..+|.++  
T Consensus       363 ~~v~~i~~d~~g-~-lWigt~~~Gl~~~~~~~~~~~~~~~~~~~~~~~v~~i~~d~-~g~-lWigt~~~Gl~~~~~~~--  436 (781)
T 3v9f_A          363 KVVSSVCDDGQG-K-LWIGTDGGGINVFENGKRVAIYNKENRELLSNSVLCSLKDS-EGN-LWFGTYLGNISYYNTRL--  436 (781)
T ss_dssp             SCEEEEEECTTS-C-EEEEEBSSCEEEEETTEEEEECC-----CCCSBEEEEEECT-TSC-EEEEETTEEEEEECSSS--
T ss_pred             cceEEEEEcCCC-C-EEEEeCCCcEEEEECCCCeEEEccCCCCCCCcceEEEEECC-CCC-EEEEeccCCEEEEcCCC--
Confidence            568889888776 4 5556655668889876443110000 012345788998877 555 44466666788898875  


Q ss_pred             CCCCCCceeeec---cCCCCeeEEEEecCCCcEEEEecCCCcEEEEeCCcccccccCCCCCcCCCCceeeee---cCCCc
Q 021657          171 SNGVGSPINKFE---GHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQH---AGHRD  244 (309)
Q Consensus       171 ~~~~~~~~~~~~---~~~~~v~~~~~~~~~~~l~~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~  244 (309)
                          ++ ...+.   .....|.++...+++. +. .|+. +-+..||.... +...            ....   .....
T Consensus       437 ----~~-~~~~~~~~~~~~~v~~i~~d~~g~-lw-igt~-~Gl~~~~~~~~-~~~~------------~~~~~~~~~~~~  495 (781)
T 3v9f_A          437 ----KK-FQIIELEKNELLDVRVFYEDKNKK-IW-IGTH-AGVFVIDLASK-KVIH------------HYDTSNSQLLEN  495 (781)
T ss_dssp             ----CE-EEECCSTTTCCCCEEEEEECTTSE-EE-EEET-TEEEEEESSSS-SCCE------------EECTTTSSCSCS
T ss_pred             ----Cc-EEEeccCCCCCCeEEEEEECCCCC-EE-EEEC-CceEEEeCCCC-eEEe------------cccCcccccccc
Confidence                33 22332   1345788998888887 44 4554 55888887651 1100            0000   01135


Q ss_pred             ceeeEEEccCCCeEEE
Q 021657          245 KVVDFHWNASDPWTVV  260 (309)
Q Consensus       245 ~v~~~~~~~~~~~~~~  260 (309)
                      .|.++...+++...+.
T Consensus       496 ~i~~i~~d~~g~lWig  511 (781)
T 3v9f_A          496 FVRSIAQDSEGRFWIG  511 (781)
T ss_dssp             CEEEEEECTTCCEEEE
T ss_pred             eeEEEEEcCCCCEEEE
Confidence            6888988887775554

>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens}

Probab=97.41  E-value=0.024  Score=43.98  Aligned_cols=150  Identities=11%  Similarity=0.055  Sum_probs=74.6

Q ss_pred             cEEEEEcCC------CeEEEEEcCCCCcceEEEeeccCCceeEEEeccCCCCeEEEEcC---------CCcEEEEecCCC
Q 021657          105 QEFCSVGDD------SCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSA---------DNSVRMFDRRNL  169 (309)
Q Consensus       105 ~~l~s~~~d------g~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~---------dg~i~i~d~~~~  169 (309)
                      .+++.|+.+      ..+.+||..+.+......+...... .+++..  ++.+++.|+.         -..+.+||+.+.
T Consensus       103 ~iyv~GG~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~-~~~~~~--~~~iyv~GG~~~~~~~~~~~~~~~~yd~~~~  179 (306)
T 3ii7_A          103 KIYTSGGSEVGNSALYLFECYDTRTESWHTKPSMLTQRCS-HGMVEA--NGLIYVCGGSLGNNVSGRVLNSCEVYDPATE  179 (306)
T ss_dssp             EEEEECCBBTTBSCCCCEEEEETTTTEEEEECCCSSCCBS-CEEEEE--TTEEEEECCEESCTTTCEECCCEEEEETTTT
T ss_pred             EEEEECCCCCCCcEeeeEEEEeCCCCceEeCCCCcCCcce-eEEEEE--CCEEEEECCCCCCCCcccccceEEEeCCCCC
Confidence            677777754      4688999887764332222111111 222222  5677777764         345888998873


Q ss_pred             CCCCCCCceeeeccCCCCeeEEEEecCCCcEEEEecCC-----CcEEEEeCCcccccccCCCCCcCCCCceeeeecCCCc
Q 021657          170 TSNGVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAED-----GLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRD  244 (309)
Q Consensus       170 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~d-----g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  244 (309)
                      .    ...+..+......- ++... +++ +++.|+.+     ..+.+||+.+.. -...            ..+.....
T Consensus       180 ~----W~~~~~~p~~r~~~-~~~~~-~~~-i~v~GG~~~~~~~~~~~~yd~~~~~-W~~~------------~~~p~~r~  239 (306)
T 3ii7_A          180 T----WTELCPMIEARKNH-GLVFV-KDK-IFAVGGQNGLGGLDNVEYYDIKLNE-WKMV------------SPMPWKGV  239 (306)
T ss_dssp             E----EEEECCCSSCCBSC-EEEEE-TTE-EEEECCEETTEEBCCEEEEETTTTE-EEEC------------CCCSCCBS
T ss_pred             e----EEECCCccchhhcc-eEEEE-CCE-EEEEeCCCCCCCCceEEEeeCCCCc-EEEC------------CCCCCCcc
Confidence            2    22222222111112 22222 444 67677654     357888887621 1110            00111111


Q ss_pred             ceeeEEEccCCCeEEEEecCCCCCCCCCCeEEEEEccc
Q 021657          245 KVVDFHWNASDPWTVVSVSDDCDSTGGGGTLQIWRMSD  282 (309)
Q Consensus       245 ~v~~~~~~~~~~~~~~s~s~d~~s~~~dg~v~vw~~~~  282 (309)
                      ....+.+   +..+++.++.+  ..+.-..+.+||+..
T Consensus       240 ~~~~~~~---~~~i~v~GG~~--~~~~~~~~~~yd~~~  272 (306)
T 3ii7_A          240 TVKCAAV---GSIVYVLAGFQ--GVGRLGHILEYNTET  272 (306)
T ss_dssp             CCEEEEE---TTEEEEEECBC--SSSBCCEEEEEETTT
T ss_pred             ceeEEEE---CCEEEEEeCcC--CCeeeeeEEEEcCCC
Confidence            1122222   45677777655  333446788899874

>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A

Probab=97.35  E-value=0.022  Score=44.33  Aligned_cols=150  Identities=9%  Similarity=0.007  Sum_probs=73.9

Q ss_pred             cEEEEEcCC-----CeEEEEEcCCCCcceEEEeeccCCceeEEEeccCCCCeEEEEcCC-----CcEEEEecCCCCCCCC
Q 021657          105 QEFCSVGDD-----SCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSAD-----NSVRMFDRRNLTSNGV  174 (309)
Q Consensus       105 ~~l~s~~~d-----g~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d-----g~i~i~d~~~~~~~~~  174 (309)
                      .+++.|+.+     ..+.+||..+.+......+........++.+   ++.+++.|+.+     ..+.+||+.+..    
T Consensus       123 ~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~---~~~iyv~GG~~~~~~~~~~~~yd~~~~~----  195 (308)
T 1zgk_A          123 HIYAVGGSHGCIHHNSVERYEPERDEWHLVAPMLTRRIGVGVAVL---NRLLYAVGGFDGTNRLNSAECYYPERNE----  195 (308)
T ss_dssp             EEEEECCEETTEECCCEEEEETTTTEEEECCCCSSCCBSCEEEEE---TTEEEEECCBCSSCBCCCEEEEETTTTE----
T ss_pred             EEEEEcCCCCCcccccEEEECCCCCeEeECCCCCccccceEEEEE---CCEEEEEeCCCCCCcCceEEEEeCCCCe----
Confidence            667776643     3588899877663222222111112222222   56777777764     458889987632    


Q ss_pred             CCceeeeccCCCCeeEEEEecCCCcEEEEecCC-----CcEEEEeCCcccccccCCCCCcCCCCceeeeecCCCcceeeE
Q 021657          175 GSPINKFEGHSAAVLCVQWSPDKSSVFGSSAED-----GLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKVVDF  249 (309)
Q Consensus       175 ~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~d-----g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~  249 (309)
                      ...+..+.........+.+  ++. +++.|+.+     ..+.+||+.... -...            ..+.........+
T Consensus       196 W~~~~~~p~~r~~~~~~~~--~~~-iyv~GG~~~~~~~~~v~~yd~~~~~-W~~~------------~~~p~~r~~~~~~  259 (308)
T 1zgk_A          196 WRMITAMNTIRSGAGVCVL--HNC-IYAAGGYDGQDQLNSVERYDVETET-WTFV------------APMKHRRSALGIT  259 (308)
T ss_dssp             EEECCCCSSCCBSCEEEEE--TTE-EEEECCBCSSSBCCCEEEEETTTTE-EEEC------------CCCSSCCBSCEEE
T ss_pred             EeeCCCCCCccccceEEEE--CCE-EEEEeCCCCCCccceEEEEeCCCCc-EEEC------------CCCCCCccceEEE
Confidence            2222222211122222222  344 67777654     558899987622 1110            0011111111122


Q ss_pred             EEccCCCeEEEEecCCCCCCCCCCeEEEEEccc
Q 021657          250 HWNASDPWTVVSVSDDCDSTGGGGTLQIWRMSD  282 (309)
Q Consensus       250 ~~~~~~~~~~~s~s~d~~s~~~dg~v~vw~~~~  282 (309)
                      .+   +..+++.++.+  ....-..+.+||+..
T Consensus       260 ~~---~~~i~v~GG~~--~~~~~~~v~~yd~~~  287 (308)
T 1zgk_A          260 VH---QGRIYVLGGYD--GHTFLDSVECYDPDT  287 (308)
T ss_dssp             EE---TTEEEEECCBC--SSCBCCEEEEEETTT
T ss_pred             EE---CCEEEEEcCcC--CCcccceEEEEcCCC
Confidence            22   45677777655  333346788888873

>2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus}

Probab=97.32  E-value=0.039  Score=43.39  Aligned_cols=108  Identities=15%  Similarity=0.238  Sum_probs=60.9

Q ss_pred             ccCCeEEEEEecCCCcEEEEEcCCCeEEEEEcCCCCcceEEEeeccCCceeEEEeccCCCCeEEEEcCCCcEEEEecCCC
Q 021657           90 HEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNL  169 (309)
Q Consensus        90 ~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~  169 (309)
                      ....+..+.+.+++ .+++.+...+..+-+|-.....  ..........+..+.+.+ ++..++. +.+|.+++.+... 
T Consensus       161 ~~~~~~~~~~~~~~-~~~~~g~~G~~~~S~d~gG~tW--~~~~~~~~~~~~~~~~~~-~g~~~~~-~~~G~~~~s~~D~-  234 (327)
T 2xbg_A          161 AIGVMRNLNRSPSG-EYVAVSSRGSFYSTWEPGQTAW--EPHNRTTSRRLHNMGFTP-DGRLWMI-VNGGKIAFSDPDN-  234 (327)
T ss_dssp             CCCCEEEEEECTTS-CEEEEETTSSEEEEECTTCSSC--EEEECCSSSCEEEEEECT-TSCEEEE-ETTTEEEEEETTE-
T ss_pred             CCcceEEEEEcCCC-cEEEEECCCcEEEEeCCCCCce--eECCCCCCCccceeEECC-CCCEEEE-eCCceEEEecCCC-
Confidence            34568889999987 6666664443333344211221  112234456788999988 7765544 4678887764221 


Q ss_pred             CCCCCCCceeeec----cCCCCeeEEEEecCCCcEEEEecCCCcE
Q 021657          170 TSNGVGSPINKFE----GHSAAVLCVQWSPDKSSVFGSSAEDGLL  210 (309)
Q Consensus       170 ~~~~~~~~~~~~~----~~~~~v~~~~~~~~~~~l~~~~~~dg~i  210 (309)
                           ++.-..+.    .....+.++++.+++. +++++. +|.+
T Consensus       235 -----G~tW~~~~~~~~~~~~~~~~v~~~~~~~-~~~~g~-~g~i  272 (327)
T 2xbg_A          235 -----SENWGELLSPLRRNSVGFLDLAYRTPNE-VWLAGG-AGAL  272 (327)
T ss_dssp             -----EEEECCCBCTTSSCCSCEEEEEESSSSC-EEEEES-TTCE
T ss_pred             -----CCeeEeccCCcccCCcceEEEEecCCCE-EEEEeC-CCeE
Confidence                 11111111    1123588899998776 565554 6766

>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens}

Probab=97.24  E-value=0.044  Score=42.36  Aligned_cols=103  Identities=11%  Similarity=0.131  Sum_probs=55.6

Q ss_pred             cEEEEEcCC-----CeEEEEEcCCCCcceEEEeeccCCceeEEEeccCCCCeEEEEcCC-----CcEEEEecCCCCCCCC
Q 021657          105 QEFCSVGDD-----SCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSAD-----NSVRMFDRRNLTSNGV  174 (309)
Q Consensus       105 ~~l~s~~~d-----g~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d-----g~i~i~d~~~~~~~~~  174 (309)
                      .+++.|+.+     ..+.+||+.+.+............. .+++..  ++.+++.|+.+     ..+.+||+.+..    
T Consensus       114 ~lyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~-~~~~~~--~~~iyv~GG~~~~~~~~~~~~~d~~~~~----  186 (301)
T 2vpj_A          114 MIYVSGGFDGSRRHTSMERYDPNIDQWSMLGDMQTAREG-AGLVVA--SGVIYCLGGYDGLNILNSVEKYDPHTGH----  186 (301)
T ss_dssp             EEEEECCBCSSCBCCEEEEEETTTTEEEEEEECSSCCBS-CEEEEE--TTEEEEECCBCSSCBCCCEEEEETTTTE----
T ss_pred             EEEEEcccCCCcccceEEEEcCCCCeEEECCCCCCCccc-ceEEEE--CCEEEEECCCCCCcccceEEEEeCCCCc----
Confidence            677777643     3688999887764333332221112 222222  56777877754     458889987632    


Q ss_pred             CCceeeeccCCCCeeEEEEecCCCcEEEEecCC-----CcEEEEeCCc
Q 021657          175 GSPINKFEGHSAAVLCVQWSPDKSSVFGSSAED-----GLLNIWDYEK  217 (309)
Q Consensus       175 ~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~d-----g~i~iwd~~~  217 (309)
                      ...+..+.........+.+  ++. +++.|+.+     ..+.+||+.+
T Consensus       187 W~~~~~~p~~r~~~~~~~~--~~~-i~v~GG~~~~~~~~~v~~yd~~~  231 (301)
T 2vpj_A          187 WTNVTPMATKRSGAGVALL--NDH-IYVVGGFDGTAHLSSVEAYNIRT  231 (301)
T ss_dssp             EEEECCCSSCCBSCEEEEE--TTE-EEEECCBCSSSBCCCEEEEETTT
T ss_pred             EEeCCCCCcccccceEEEE--CCE-EEEEeCCCCCcccceEEEEeCCC
Confidence            2222222211111222222  343 67777754     4688999876

>2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus}

Probab=97.13  E-value=0.062  Score=42.75  Aligned_cols=107  Identities=9%  Similarity=0.090  Sum_probs=59.8

Q ss_pred             CCeEEEEEecCCCcEEEEEcCCCeEEEEEcCCCCcceEEEe---eccCCceeEEEeccCC----CCeEEEEcCC-----C
Q 021657           92 DTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPVIKVE---KAHDADLHCVDWNPLD----DNLILTGSAD-----N  159 (309)
Q Consensus        92 ~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~---~~~~~~v~~~~~~~~~----~~~l~~~~~d-----g  159 (309)
                      ...+.++|.|+| .++++ ..+|.|.+++  .++.......   .........|+++| +    +.++++-...     +
T Consensus        31 ~~P~~ia~~pdG-~l~V~-e~~g~I~~i~--~g~~~~~~~~~v~~~g~~~p~gia~~p-df~~~g~lYv~~~~~~~~~~~  105 (352)
T 2ism_A           31 EVPWALAFLPDG-GMLIA-ERPGRIRLFR--EGRLSTYAELSVYHRGESGLLGLALHP-RFPQEPYVYAYRTVAEGGLRN  105 (352)
T ss_dssp             SCEEEEEECTTS-CEEEE-ETTTEEEEEE--TTEEEEEEECCCCCSTTCSEEEEEECT-TTTTSCEEEEEEEECTTSSEE
T ss_pred             CCceEEEEcCCC-eEEEE-eCCCeEEEEE--CCCccEeecceEeecCCCCceeEEECC-CCCCCCEEEEEEecCCCCCcc
Confidence            356799999998 65554 5669999998  3332111111   12235678999999 6    3444443322     5


Q ss_pred             cEEEEecCCCCCCCCCCce-eeec---cCCCCeeEEEEecCCCcEEEEec
Q 021657          160 SVRMFDRRNLTSNGVGSPI-NKFE---GHSAAVLCVQWSPDKSSVFGSSA  205 (309)
Q Consensus       160 ~i~i~d~~~~~~~~~~~~~-~~~~---~~~~~v~~~~~~~~~~~l~~~~~  205 (309)
                      .|..|+........ .+.+ ..+.   ........|+|.|+|. |+++-+
T Consensus       106 ~v~r~~~~~~~~~~-~~~l~~~~p~~~~~~h~~~~l~~~pdG~-Lyv~~G  153 (352)
T 2ism_A          106 QVVRLRHLGERGVL-DRVVLDGIPARPHGLHSGGRIAFGPDGM-LYVTTG  153 (352)
T ss_dssp             EEEEEEECSSCEEE-EEEEEEEECCCTTCCCCCCCEEECTTSC-EEEECC
T ss_pred             EEEEEEeCCCCcCc-eEEEEEeCCCCCCCCcCCceEEECCCCC-EEEEEC
Confidence            67777776310000 1111 1232   1112346899999996 565543

>3pbp_A Nucleoporin NUP82; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 3tkn_A

Probab=96.91  E-value=0.12  Score=41.74  Aligned_cols=113  Identities=19%  Similarity=0.257  Sum_probs=74.9

Q ss_pred             CeEEEEEecCCCcEEEEEcCCCeEEEEEcCCCCc----------ceEEEeec------cCCceeEEEeccC--CCCeEEE
Q 021657           93 TVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTS----------PVIKVEKA------HDADLHCVDWNPL--DDNLILT  154 (309)
Q Consensus        93 ~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~----------~~~~~~~~------~~~~v~~~~~~~~--~~~~l~~  154 (309)
                      .|..+..+|+| .+||..+. ..|.|-.+..+..          .....+.-      ...+|..+.|+|.  .+..|++
T Consensus        67 ~i~qlvlSpsG-~lLAl~g~-~~V~Vv~LP~~~~~~~~~~~~~~~q~~ty~l~~~~~~~~s~I~qVlWHPl~~~ds~LVV  144 (452)
T 3pbp_A           67 DTFHVISSTSG-DLLCLFND-NEIFVMEVPWGYSNVEDVSIQDAFQIFHYSIDEEEVGPKSSIKKVLFHPKSYRDSCIVV  144 (452)
T ss_dssp             TTCEEEECTTS-SEEEEECS-SEEEEEECCTTCSCCCCHHHHHTTEEEEEEGGGCC--CCCCEEEEEECTTBGGGCEEEE
T ss_pred             ceeEEEECCCC-CEEEEecC-CeEEEEEecCccccCcccccccccceeEEEcCCcccCCCCceeEEEeccccCCCCeEEE
Confidence            56779999999 77777654 5788888873321          01122221      2567999999993  2358999


Q ss_pred             EcCCCcEEEEecCCCCCCCCCCceeeec---------cCCCCeeEEEEecCCCcEEEE-ecCCCcEEE
Q 021657          155 GSADNSVRMFDRRNLTSNGVGSPINKFE---------GHSAAVLCVQWSPDKSSVFGS-SAEDGLLNI  212 (309)
Q Consensus       155 ~~~dg~i~i~d~~~~~~~~~~~~~~~~~---------~~~~~v~~~~~~~~~~~l~~~-~~~dg~i~i  212 (309)
                      -..|+.||+||+.....    ++. .+.         .....|.+++|.+++-.|++. .+++|-|+-
T Consensus       145 LtsD~~Ir~yDl~~s~~----~P~-~L~k~~~~fg~d~~~~ev~S~~Fg~~~lTLYvl~~t~~GDIYA  207 (452)
T 3pbp_A          145 LKEDDTITMFDILNSQE----KPI-VLNKPNNSFGLDARVNDITDLEFSKDGLTLYCLNTTEGGDIFA  207 (452)
T ss_dssp             EETTSCEEEEETTCTTS----CCE-EESCCCSEEESCSSCCCEEEEEECTTSSCEEEEECTTSCEEEE
T ss_pred             EecCCEEEEEEcccCCC----CCc-chhccccccCCCcccceEEEEEEcCCCcEEEEEecCCCCCEEE
Confidence            99999999999987332    222 221         223568899999988766532 346677653

>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens}

Probab=96.83  E-value=0.11  Score=40.10  Aligned_cols=103  Identities=13%  Similarity=0.074  Sum_probs=55.5

Q ss_pred             cEEEEEcCC-----CeEEEEEcCCCC---cceEEEeeccCCceeEEEeccCCCCeEEEEcCC-----CcEEEEecCCCCC
Q 021657          105 QEFCSVGDD-----SCLILWDARVGT---SPVIKVEKAHDADLHCVDWNPLDDNLILTGSAD-----NSVRMFDRRNLTS  171 (309)
Q Consensus       105 ~~l~s~~~d-----g~i~iwd~~~~~---~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d-----g~i~i~d~~~~~~  171 (309)
                      .+++.|+.+     ..+.+||..+.+   ......+........++.+   ++.+++.|+.+     ..+.+||+.+.. 
T Consensus        64 ~l~v~GG~~~~~~~~~~~~~d~~~~~~~~W~~~~~~p~~r~~~~~~~~---~~~lyv~GG~~~~~~~~~~~~~d~~~~~-  139 (301)
T 2vpj_A           64 RIYVIGGYDGRSRLSSVECLDYTADEDGVWYSVAPMNVRRGLAGATTL---GDMIYVSGGFDGSRRHTSMERYDPNIDQ-  139 (301)
T ss_dssp             EEEEECCBCSSCBCCCEEEEETTCCTTCCCEEECCCSSCCBSCEEEEE---TTEEEEECCBCSSCBCCEEEEEETTTTE-
T ss_pred             EEEEEcCCCCCccCceEEEEECCCCCCCeeEECCCCCCCccceeEEEE---CCEEEEEcccCCCcccceEEEEcCCCCe-
Confidence            677777754     468899988776   4333222221222222222   56777777654     358889987632 


Q ss_pred             CCCCCceeeeccCCCCeeEEEEecCCCcEEEEecCC-----CcEEEEeCCc
Q 021657          172 NGVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAED-----GLLNIWDYEK  217 (309)
Q Consensus       172 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~d-----g~i~iwd~~~  217 (309)
                         ...+..+.........+.+  ++. +++.|+.+     ..+.+||+.+
T Consensus       140 ---W~~~~~~p~~r~~~~~~~~--~~~-iyv~GG~~~~~~~~~~~~~d~~~  184 (301)
T 2vpj_A          140 ---WSMLGDMQTAREGAGLVVA--SGV-IYCLGGYDGLNILNSVEKYDPHT  184 (301)
T ss_dssp             ---EEEEEECSSCCBSCEEEEE--TTE-EEEECCBCSSCBCCCEEEEETTT
T ss_pred             ---EEECCCCCCCcccceEEEE--CCE-EEEECCCCCCcccceEEEEeCCC
Confidence               2333333222222222222  444 66677654     4588888876

>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1

Probab=96.81  E-value=0.15  Score=41.36  Aligned_cols=189  Identities=12%  Similarity=0.167  Sum_probs=108.6

Q ss_pred             CCCcccCCCCCcCcccccccccCCeEEEEEecCCCcEEEEEcCCCeEEEEEcCCCCcceEEEeeccC----CceeEEEec
Q 021657           70 DGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPVIKVEKAHD----ADLHCVDWN  145 (309)
Q Consensus        70 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~----~~v~~~~~~  145 (309)
                      +..+.+++..+...+....- ...|.--.|-.+.  .|+-.+ +..|+-|++.... .+.+.+..|.    ..|.....+
T Consensus        85 g~~lQiFnle~K~klks~~~-~e~VvfWkWis~~--~l~lVT-~taVyHWsi~~~s-~P~kvFdR~~~L~~~QIInY~~d  159 (494)
T 1bpo_A           85 GKTLQIFNIEMKSKMKAHTM-TDDVTFWKWISLN--TVALVT-DNAVYHWSMEGES-QPVKMFDRHSSLAGCQIINYRTD  159 (494)
T ss_dssp             TTEEEEEETTTTEEEEEEEC-SSCCCEEEEEETT--EEEEEC-SSEEEEEESSSSC-CCEEEEECCGGGTTCEEEEEEEC
T ss_pred             CCeEEEEchHHhhhhcceec-CCCceEEEecCCC--eEEEEc-CCeeEEecccCCC-CchhheecchhcccceEEEEEEC
Confidence            45556666666655554443 3457667776654  344443 4579999997543 3455555443    467777888


Q ss_pred             cCCCCeEEEEcC-------CCcEEEEecCCCCCCCCCCceeeeccCCCCeeEEEEecC--CCcEEEEecCC---CcEEEE
Q 021657          146 PLDDNLILTGSA-------DNSVRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWSPD--KSSVFGSSAED---GLLNIW  213 (309)
Q Consensus       146 ~~~~~~l~~~~~-------dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~--~~~l~~~~~~d---g~i~iw  213 (309)
                      + +.++++..+-       .|.+.+|..+.       +.-+.+++|......+.+..+  ...+++-+...   +.++|-
T Consensus       160 ~-~~kW~~l~GI~~~~~~v~G~mQLYS~er-------~~sQ~ieGhaa~F~~~~~~g~~~~~~lf~fa~r~~~g~kLhi~  231 (494)
T 1bpo_A          160 A-KQKWLLLTGISAQQNRVVGAMQLYSVDR-------KVSQPIEGHAASFAQFKMEGNAEESTLFCFAVRGQAGGKLHII  231 (494)
T ss_dssp             T-TSSEEEEEEEEEETTEEEEEEEEEESTT-------CCEEEECCSEEEEEEEECTTCSSEEEEEEEEECSTTCCEEEEE
T ss_pred             C-CCCeEEEEeecccCCcccceEEEeeccc-------cccchheeeeeeeEEEecCCCCCCceEEEEEEecCCCcEEEEE
Confidence            8 7887765432       36788998874       556677777655544433211  12345444432   789999


Q ss_pred             eCCcccccccCCCCCcCCCCceeeeecCCCcceeeEEEccCCCeEEEEecCCCCCCCCCCeEEEEEccc
Q 021657          214 DYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKVVDFHWNASDPWTVVSVSDDCDSTGGGGTLQIWRMSD  282 (309)
Q Consensus       214 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~s~d~~s~~~dg~v~vw~~~~  282 (309)
                      ++...........+.   .....+.-....+-..++..++..+.+++....        |.|++||+..
T Consensus       232 Ei~~~~~~~~~f~kk---~vdv~fppe~~~DFPvamqvs~kygviyviTK~--------G~i~lyDleT  289 (494)
T 1bpo_A          232 EVGTPPTGNQPFPKK---AVDVFFPPEAQNDFPVAMQISEKHDVVFLITKY--------GYIHLYDLET  289 (494)
T ss_dssp             ECSCCCTTCCCCCCE---EEECCCCTTSTTCCEEEEEEETTTTEEEEEETT--------SEEEEEETTT
T ss_pred             EcCCCccCCCCccce---eeeeeCCcccccCceeEEEecccCCEEEEEecC--------ceEEEEeccc
Confidence            986531110000000   001111112234455678888877766655444        8999999993

>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens}

Probab=96.78  E-value=0.12  Score=39.88  Aligned_cols=103  Identities=12%  Similarity=0.101  Sum_probs=53.5

Q ss_pred             cEEEEEcCC-----CeEEEEEcCCCCcceEEEeeccCCceeEEEeccCCCCeEEEEcCCC-----cEEEEecCCCCCCCC
Q 021657          105 QEFCSVGDD-----SCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADN-----SVRMFDRRNLTSNGV  174 (309)
Q Consensus       105 ~~l~s~~~d-----g~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg-----~i~i~d~~~~~~~~~  174 (309)
                      .+++.|+.+     ..+.+||..+.+......+....... +++..  ++.+++.|+.++     .+.+||+.+..    
T Consensus        63 ~lyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~-~~~~~--~~~iyv~GG~~~~~~~~~~~~~d~~~~~----  135 (302)
T 2xn4_A           63 LVFAVGGFNGSLRVRTVDSYDPVKDQWTSVANMRDRRSTL-GAAVL--NGLLYAVGGFDGSTGLSSVEAYNIKSNE----  135 (302)
T ss_dssp             EEEEESCBCSSSBCCCEEEEETTTTEEEEECCCSSCCBSC-EEEEE--TTEEEEEEEECSSCEEEEEEEEETTTTE----
T ss_pred             EEEEEeCcCCCccccceEEECCCCCceeeCCCCCccccce-EEEEE--CCEEEEEcCCCCCccCceEEEEeCCCCe----
Confidence            677777754     35888998877643332222111122 22222  567777777653     47788887632    


Q ss_pred             CCceeeeccCCCCeeEEEEecCCCcEEEEecCC-------CcEEEEeCCc
Q 021657          175 GSPINKFEGHSAAVLCVQWSPDKSSVFGSSAED-------GLLNIWDYEK  217 (309)
Q Consensus       175 ~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~d-------g~i~iwd~~~  217 (309)
                      ...+..+....... +++.. ++. +++.|+.+       ..+.+||+..
T Consensus       136 W~~~~~~p~~r~~~-~~~~~-~~~-iyv~GG~~~~~~~~~~~~~~yd~~~  182 (302)
T 2xn4_A          136 WFHVAPMNTRRSSV-GVGVV-GGL-LYAVGGYDVASRQCLSTVECYNATT  182 (302)
T ss_dssp             EEEECCCSSCCBSC-EEEEE-TTE-EEEECCEETTTTEECCCEEEEETTT
T ss_pred             EeecCCCCCcccCc-eEEEE-CCE-EEEEeCCCCCCCccccEEEEEeCCC
Confidence            22222222111122 22222 344 66677643       3478888876

>3pbp_A Nucleoporin NUP82; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 3tkn_A

Probab=96.75  E-value=0.16  Score=41.01  Aligned_cols=150  Identities=12%  Similarity=0.081  Sum_probs=87.6

Q ss_pred             ecCCCcEEEEEcCCCeEEEEEcCCCCcceEEEeecc----CCceeEEEeccCCCCeEEEEcCCCcEEEEecCCCCCCCCC
Q 021657          100 CPSSAQEFCSVGDDSCLILWDARVGTSPVIKVEKAH----DADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVG  175 (309)
Q Consensus       100 ~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~----~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~  175 (309)
                      +.+| ..++.+ .++.||.-++....  ..+.+...    -..|..+..+| +|.+||..+ +..|.|..+.........
T Consensus        29 ~~n~-t~i~~a-~~n~iR~~~i~~~~--~Yk~L~~~~~i~f~~i~qlvlSp-sG~lLAl~g-~~~V~Vv~LP~~~~~~~~  102 (452)
T 3pbp_A           29 SQNG-TRIVFI-QDNIIRWYNVLTDS--LYHSLNFSRHLVLDDTFHVISST-SGDLLCLFN-DNEIFVMEVPWGYSNVED  102 (452)
T ss_dssp             ETTT-TEEEEE-ETTEEEEEETTTCS--SCEEEECTTTCCCCTTCEEEECT-TSSEEEEEC-SSEEEEEECCTTCSCCCC
T ss_pred             EcCC-CEEEEE-ECCEEEEEECCCCC--cceEEecCcccccCceeEEEECC-CCCEEEEec-CCeEEEEEecCccccCcc
Confidence            3444 334433 34788888876443  23333322    23688899999 999999986 558999888742211100


Q ss_pred             ------Cceeeecc------CCCCeeEEEEecCCCc--EEEEecCCCcEEEEeCCcccccccCCCCCcCCCCceeeeecC
Q 021657          176 ------SPINKFEG------HSAAVLCVQWSPDKSS--VFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAG  241 (309)
Q Consensus       176 ------~~~~~~~~------~~~~v~~~~~~~~~~~--l~~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~  241 (309)
                            -..+.+.-      ...+|..+.|+|-+..  .+++-..|+.|++||+...........    ... ..+....
T Consensus       103 ~~~~~~~q~~ty~l~~~~~~~~s~I~qVlWHPl~~~ds~LVVLtsD~~Ir~yDl~~s~~~P~~L~----k~~-~~fg~d~  177 (452)
T 3pbp_A          103 VSIQDAFQIFHYSIDEEEVGPKSSIKKVLFHPKSYRDSCIVVLKEDDTITMFDILNSQEKPIVLN----KPN-NSFGLDA  177 (452)
T ss_dssp             HHHHHTTEEEEEEGGGCC--CCCCEEEEEECTTBGGGCEEEEEETTSCEEEEETTCTTSCCEEES----CCC-SEEESCS
T ss_pred             cccccccceeEEEcCCcccCCCCceeEEEeccccCCCCeEEEEecCCEEEEEEcccCCCCCcchh----ccc-cccCCCc
Confidence                  11122221      2567999999996532  345777899999999987221111000    011 1223344


Q ss_pred             CCcceeeEEEccCCCeEEE
Q 021657          242 HRDKVVDFHWNASDPWTVV  260 (309)
Q Consensus       242 ~~~~v~~~~~~~~~~~~~~  260 (309)
                      ....|.+++|..++=.|.+
T Consensus       178 ~~~ev~S~~Fg~~~lTLYv  196 (452)
T 3pbp_A          178 RVNDITDLEFSKDGLTLYC  196 (452)
T ss_dssp             SCCCEEEEEECTTSSCEEE
T ss_pred             ccceEEEEEEcCCCcEEEE
Confidence            5577899999986544443

>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A

Probab=96.68  E-value=0.15  Score=39.55  Aligned_cols=103  Identities=12%  Similarity=0.086  Sum_probs=52.9

Q ss_pred             cEEEEEcC----C-----CeEEEEEcCCCCcceEEEeeccCCceeEEEeccCCCCeEEEEcCC-----CcEEEEecCCCC
Q 021657          105 QEFCSVGD----D-----SCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSAD-----NSVRMFDRRNLT  170 (309)
Q Consensus       105 ~~l~s~~~----d-----g~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d-----g~i~i~d~~~~~  170 (309)
                      .+++.|+.    +     ..+.+||..+.+......+.........+.+   ++.+++.|+.+     ..+.+||+.+..
T Consensus        72 ~lyv~GG~~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~---~~~iyv~GG~~~~~~~~~~~~yd~~~~~  148 (308)
T 1zgk_A           72 LLYAVGGRNNSPDGNTDSSALDCYNPMTNQWSPCAPMSVPRNRIGVGVI---DGHIYAVGGSHGCIHHNSVERYEPERDE  148 (308)
T ss_dssp             EEEEECCEEEETTEEEECCCEEEEETTTTEEEECCCCSSCCBTCEEEEE---TTEEEEECCEETTEECCCEEEEETTTTE
T ss_pred             EEEEECCCcCCCCCCeecceEEEECCCCCeEeECCCCCcCccccEEEEE---CCEEEEEcCCCCCcccccEEEECCCCCe
Confidence            66777665    2     4688899877663222222111112222222   56777777644     357889987632


Q ss_pred             CCCCCCceeeeccCCCCeeEEEEecCCCcEEEEecCC-----CcEEEEeCCc
Q 021657          171 SNGVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAED-----GLLNIWDYEK  217 (309)
Q Consensus       171 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~d-----g~i~iwd~~~  217 (309)
                          ...+..+.........+.+  ++. +++.|+.+     ..+.+||+..
T Consensus       149 ----W~~~~~~p~~r~~~~~~~~--~~~-iyv~GG~~~~~~~~~~~~yd~~~  193 (308)
T 1zgk_A          149 ----WHLVAPMLTRRIGVGVAVL--NRL-LYAVGGFDGTNRLNSAECYYPER  193 (308)
T ss_dssp             ----EEECCCCSSCCBSCEEEEE--TTE-EEEECCBCSSCBCCCEEEEETTT
T ss_pred             ----EeECCCCCccccceEEEEE--CCE-EEEEeCCCCCCcCceEEEEeCCC
Confidence                2222222211112222222  344 67677654     4588888876

>1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A*

Probab=96.60  E-value=0.061  Score=39.19  Aligned_cols=106  Identities=7%  Similarity=0.077  Sum_probs=61.7

Q ss_pred             CeEEEEEecCCCcEEEEEcCCCeEEEEEcCCCCcc----eEEEe-e-ccCCceeEEEeccCCCCeEEEEcCCCcEEEEec
Q 021657           93 TVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSP----VIKVE-K-AHDADLHCVDWNPLDDNLILTGSADNSVRMFDR  166 (309)
Q Consensus        93 ~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~----~~~~~-~-~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~  166 (309)
                      .+.+++|+|+| .+.+.  .+|.+.-.+..+....    ....+ . +.. ...++.|.| ++.+.++  .||.|+-++.
T Consensus        42 ~~~~laf~P~G-~LYaV--~~G~Ly~~~~~t~~~~~W~~s~t~IG~~Gw~-~F~a~~fD~-~G~LYav--~dG~iyr~~p  114 (236)
T 1tl2_A           42 NFKFLFLSPGG-ELYGV--LNDKIYKGTPPTHDNDNWMGRAKKIGNGGWN-QFQFLFFDP-NGYLYAV--SKDKLYKASP  114 (236)
T ss_dssp             TCSEEEECTTS-CEEEE--ETTEEEEESCCCSTTCCHHHHCEEEECSCGG-GCSEEEECT-TSCEEEE--ETTEEEEESC
T ss_pred             cceeEEECCCc-cEEEE--eCCeEEEECCCCCCcccccccccEecccccc-cceEEEECC-CCCEEEe--CCCEEEEeCC
Confidence            67799999987 65555  7787766665442210    00111 0 111 247899999 8888887  5698887765


Q ss_pred             CCCCCCCCCCcee--ee--ccCCCCeeEEEEecCCCcEEEEecCCCcEE
Q 021657          167 RNLTSNGVGSPIN--KF--EGHSAAVLCVQWSPDKSSVFGSSAEDGLLN  211 (309)
Q Consensus       167 ~~~~~~~~~~~~~--~~--~~~~~~v~~~~~~~~~~~l~~~~~~dg~i~  211 (309)
                      .+...   ..-+.  ..  ...=..+..|.+.|+|. |.+..  |+.++
T Consensus       115 P~~~~---~~Wl~~a~~vg~~gw~~~~~lff~p~G~-Lyav~--dg~ly  157 (236)
T 1tl2_A          115 PQSDT---DNWIARATEVGSGGWSGFKFLFFHPNGY-LYAVH--GQQFY  157 (236)
T ss_dssp             CCSTT---CCHHHHSEEEECSSGGGEEEEEECTTSC-EEEEE--TTEEE
T ss_pred             CcCCC---CceeccccEeccCCCCceEEEEECCCce-EEEEe--CCcEE
Confidence            33110   10000  11  00113578999999998 56555  77743

>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens}

Probab=96.56  E-value=0.18  Score=39.00  Aligned_cols=103  Identities=6%  Similarity=0.013  Sum_probs=55.0

Q ss_pred             cEEEEEcCC----CeEEEEEcCCCCcceEEEeeccCCceeEEEeccCCCCeEEEEcCC------CcEEEEecCCCCCCCC
Q 021657          105 QEFCSVGDD----SCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSAD------NSVRMFDRRNLTSNGV  174 (309)
Q Consensus       105 ~~l~s~~~d----g~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d------g~i~i~d~~~~~~~~~  174 (309)
                      .+++.|+.+    ..+.+||..+.+......+.........+.+   ++.+++.|+.+      ..+.+||..+..    
T Consensus        57 ~lyv~GG~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~---~~~iyv~GG~~~~~~~~~~~~~~d~~~~~----  129 (306)
T 3ii7_A           57 VVYILGGSQLFPIKRMDCYNVVKDSWYSKLGPPTPRDSLAACAA---EGKIYTSGGSEVGNSALYLFECYDTRTES----  129 (306)
T ss_dssp             EEEEECCBSSSBCCEEEEEETTTTEEEEEECCSSCCBSCEEEEE---TTEEEEECCBBTTBSCCCCEEEEETTTTE----
T ss_pred             EEEEEeCCCCCCcceEEEEeCCCCeEEECCCCCccccceeEEEE---CCEEEEECCCCCCCcEeeeEEEEeCCCCc----
Confidence            677777754    6788999887764333222211122222222   56777887765      458889988632    


Q ss_pred             CCceeeeccCCCCeeEEEEecCCCcEEEEecC---------CCcEEEEeCCc
Q 021657          175 GSPINKFEGHSAAVLCVQWSPDKSSVFGSSAE---------DGLLNIWDYEK  217 (309)
Q Consensus       175 ~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~---------dg~i~iwd~~~  217 (309)
                      ...+..+........ ++. -++. +++.|+.         -..+.+||..+
T Consensus       130 W~~~~~~p~~r~~~~-~~~-~~~~-iyv~GG~~~~~~~~~~~~~~~~yd~~~  178 (306)
T 3ii7_A          130 WHTKPSMLTQRCSHG-MVE-ANGL-IYVCGGSLGNNVSGRVLNSCEVYDPAT  178 (306)
T ss_dssp             EEEECCCSSCCBSCE-EEE-ETTE-EEEECCEESCTTTCEECCCEEEEETTT
T ss_pred             eEeCCCCcCCcceeE-EEE-ECCE-EEEECCCCCCCCcccccceEEEeCCCC
Confidence            222222221111122 222 2444 6666663         34578888876

>3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A*

Probab=96.47  E-value=0.24  Score=39.39  Aligned_cols=108  Identities=13%  Similarity=0.097  Sum_probs=59.2

Q ss_pred             CCeEEEEEecCCCcEEEEEcCCCeEEEEEcCCCCcceEEEe---eccCCceeEEEeccCC----CCeEEEEcC---C---
Q 021657           92 DTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPVIKVE---KAHDADLHCVDWNPLD----DNLILTGSA---D---  158 (309)
Q Consensus        92 ~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~---~~~~~~v~~~~~~~~~----~~~l~~~~~---d---  158 (309)
                      .....|+|.|+| .++++ ..+|.|+++|. .++ ..+..+   .........|+++| +    +.++++-..   +   
T Consensus        29 ~~P~~ia~~pdG-~l~V~-e~~g~I~~~d~-~G~-~~~~~~~v~~~g~~g~~gia~~p-df~~~g~lyv~~~~~~~~~~~  103 (354)
T 3a9g_A           29 EVPWSIAPLGGG-RYLVT-ERPGRLVLISP-SGK-KLVASFDVANVGEAGLLGLALHP-EFPKKSWVYLYASYFAEGGHI  103 (354)
T ss_dssp             SCEEEEEEEETT-EEEEE-ETTTEEEEECS-SCE-EEEEECCCCCSTTCSEEEEEECT-TTTTSCEEEEEEEEECGGGCE
T ss_pred             CCCeEEEEcCCC-eEEEE-eCCCEEEEEeC-CCc-eEeeccceeecCCCceeeEEeCC-CCCcCCEEEEEEeccCCCCCc
Confidence            456899999998 65554 56699999973 333 222221   12235688999999 5    444444332   2   


Q ss_pred             -CcEEEEecCCCCCCC-CCCce-eeecc-CCCCeeEEEEecCCCcEEEEec
Q 021657          159 -NSVRMFDRRNLTSNG-VGSPI-NKFEG-HSAAVLCVQWSPDKSSVFGSSA  205 (309)
Q Consensus       159 -g~i~i~d~~~~~~~~-~~~~~-~~~~~-~~~~v~~~~~~~~~~~l~~~~~  205 (309)
                       ..|..|+........ ..+.+ ..+.. .......|+|.|||. |+++-+
T Consensus       104 ~~~v~r~~~~~~~~~~~~~~~l~~~~~~~~~h~~~~l~~~pDG~-Lyvt~G  153 (354)
T 3a9g_A          104 RNRVIRGRLDGSTFKLKEVKTLIDGIPGAYIHNGGRIRFGPDGM-LYITTG  153 (354)
T ss_dssp             EEEEEEEEECSSSCCEEEEEEEEEEEECCSSCCCCCEEECTTSC-EEEECC
T ss_pred             ceEEEEEEECCCCcCcCccEEEEEcCCCCCCcCCceEEECCCCc-EEEEEC
Confidence             567777765410000 00111 11221 112346799999997 565543

>2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus}

Probab=96.44  E-value=0.25  Score=39.24  Aligned_cols=106  Identities=13%  Similarity=0.154  Sum_probs=58.8

Q ss_pred             eEEEEECCCCCEEEEecCCCcEEEEeCCccccccccCCccccccCCCCceeecCCCCCCCCcccCCCCCcCccccccccc
Q 021657           12 EFALAMCPTEPYVLSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHE   91 (309)
Q Consensus        12 V~~~~~~~~~~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   91 (309)
                      -+.++|.|+|+++++ ..+|.|++++ . +.......                                   +..+....
T Consensus        33 P~~ia~~pdG~l~V~-e~~g~I~~i~-~-g~~~~~~~-----------------------------------~~v~~~g~   74 (352)
T 2ism_A           33 PWALAFLPDGGMLIA-ERPGRIRLFR-E-GRLSTYAE-----------------------------------LSVYHRGE   74 (352)
T ss_dssp             EEEEEECTTSCEEEE-ETTTEEEEEE-T-TEEEEEEE-----------------------------------CCCCCSTT
T ss_pred             ceEEEEcCCCeEEEE-eCCCeEEEEE-C-CCccEeec-----------------------------------ceEeecCC
Confidence            369999999986555 4569999988 3 21000000                                   00011123


Q ss_pred             CCeEEEEEecC---CCcEEEEEcCC-----CeEEEEEcCCCCc----ceEEEee---ccCCceeEEEeccCCCCeEEEEc
Q 021657           92 DTVEDVTFCPS---SAQEFCSVGDD-----SCLILWDARVGTS----PVIKVEK---AHDADLHCVDWNPLDDNLILTGS  156 (309)
Q Consensus        92 ~~v~~~~~~~~---~~~~l~s~~~d-----g~i~iwd~~~~~~----~~~~~~~---~~~~~v~~~~~~~~~~~~l~~~~  156 (309)
                      .....|+|+|+   ++.++++-...     +.|..++......    .....+.   ........++|.| ++.++++-+
T Consensus        75 ~~p~gia~~pdf~~~g~lYv~~~~~~~~~~~~v~r~~~~~~~~~~~~~l~~~~p~~~~~~h~~~~l~~~p-dG~Lyv~~G  153 (352)
T 2ism_A           75 SGLLGLALHPRFPQEPYVYAYRTVAEGGLRNQVVRLRHLGERGVLDRVVLDGIPARPHGLHSGGRIAFGP-DGMLYVTTG  153 (352)
T ss_dssp             CSEEEEEECTTTTTSCEEEEEEEECTTSSEEEEEEEEECSSCEEEEEEEEEEECCCTTCCCCCCCEEECT-TSCEEEECC
T ss_pred             CCceeEEECCCCCCCCEEEEEEecCCCCCccEEEEEEeCCCCcCceEEEEEeCCCCCCCCcCCceEEECC-CCCEEEEEC
Confidence            45788999998   43555544432     6788888764321    1111122   1112346899999 887666643

>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A

Probab=96.34  E-value=0.45  Score=44.85  Aligned_cols=234  Identities=12%  Similarity=0.160  Sum_probs=123.6

Q ss_pred             CCCcEEEEeCCccccccccCC-ccccccCCCCceeecCCCCCCCCcccCCCCCcCcccccccccCCeEEEEEecCCCcEE
Q 021657           29 KDKSVVLWSIQDHITSSATDP-ATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQEF  107 (309)
Q Consensus        29 ~dg~i~vwd~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l  107 (309)
                      ...+|.|-|+.++........ ...........+..+-   .+..+.+++..+...+....- ..+|.--.|-...  .|
T Consensus        46 ~~~~vvIidl~~~~~~~rrpi~AdsAIMnP~~~iiALr---ag~~lQiFnl~~k~klks~~~-~e~VvfWkWis~~--~l  119 (1630)
T 1xi4_A           46 EQAQVVIIDMNDPSNPIRRPISADSAIMNPASKVIALK---AGKTLQIFNIEMKSKMKAHTM-TDDVTFWKWISLN--TV  119 (1630)
T ss_pred             CCceEEEEECCCCCCcccccccchhhccCCCcceEEEe---cCCeEEEeehHHhhhhccccc-CCCceEEEecCCC--ee
Confidence            344777888887644432221 1111222222222222   256677777766666555443 3456666776554  34


Q ss_pred             EEEcCCCeEEEEEcCCCCcceEEEeecc----CCceeEEEeccCCCCeEEEEc-------CCCcEEEEecCCCCCCCCCC
Q 021657          108 CSVGDDSCLILWDARVGTSPVIKVEKAH----DADLHCVDWNPLDDNLILTGS-------ADNSVRMFDRRNLTSNGVGS  176 (309)
Q Consensus       108 ~s~~~dg~i~iwd~~~~~~~~~~~~~~~----~~~v~~~~~~~~~~~~l~~~~-------~dg~i~i~d~~~~~~~~~~~  176 (309)
                      +-.+ +..|.-|++.... .+.+.+..|    ...|.....++ +.++++..+       -.|.+.+|..+.       +
T Consensus       120 ~lVT-~~aVyHW~~~~~s-~P~k~fdR~~~L~~~QIinY~~d~-~~kW~~l~gi~~~~~~v~G~mQLyS~er-------~  189 (1630)
T 1xi4_A          120 ALVT-DNAVYHWSMEGES-QPVKMFDRHSSLAGCQIINYRTDA-KQKWLLLTGISAQQNRVVGAMQLYSVDR-------K  189 (1630)
T ss_pred             EEEc-CCeEEEeccCCCC-ccHHHHhcchhcccCeeEEeeeCC-CCCeEEEEeeccCCCcccceeeeeeccc-------c
Confidence            4333 3579999996533 234444444    45677777888 777766443       347888888874       3


Q ss_pred             ceeeeccCCCCeeEEEEe--cCCCcEEEEecC---CCcEEEEeCCcccccccCCCCCcCCCCceeeeecCCCcceeeEEE
Q 021657          177 PINKFEGHSAAVLCVQWS--PDKSSVFGSSAE---DGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKVVDFHW  251 (309)
Q Consensus       177 ~~~~~~~~~~~v~~~~~~--~~~~~l~~~~~~---dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~  251 (309)
                      .-+.+.+|......+...  +....+++.+..   .+.++|-++...........+.   .....+.-....+-..++..
T Consensus       190 ~sQ~iegha~~F~~~~~~~~~~~~~l~~f~~~~~~g~kLhi~Ei~~~~~~~~~f~kk---~~~~~~~~~~~~Dfpv~~~v  266 (1630)
T 1xi4_A          190 VSQPIEGHAASFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKK---AVDVFFPPEAQNDFPVAMQI  266 (1630)
T ss_pred             cchhhhHhHhhhheeccCCCCCCceEEEEEEecCCCceEEEEecCCCccCCCCCccc---cccccCCcccccCcceEEEe
Confidence            445566665544433332  222234433322   2689999986531111100000   01111111222344566777


Q ss_pred             ccCCCeEEEEecCCCCCCCCCCeEEEEEccccccCChhhHhHhh
Q 021657          252 NASDPWTVVSVSDDCDSTGGGGTLQIWRMSDLIYRPQDEVLAEL  295 (309)
Q Consensus       252 ~~~~~~~~~s~s~d~~s~~~dg~v~vw~~~~~~~~~~~~~~~~~  295 (309)
                      ++..+.+++....        |.+.++|+.      ++.++..-
T Consensus       267 s~k~g~iy~itk~--------G~~~~~d~~------t~~~i~~~  296 (1630)
T 1xi4_A          267 SEKHDVVFLITKY--------GYIHLYDLE------TGTCIYMN  296 (1630)
T ss_pred             ccccCEEEEEecC--------ceEEEEecc------cchhhhhc
Confidence            8776666544333        899999999      56665543

>2g8s_A Glucose/sorbosone dehydrogenases; bladed beta-propellor, pyrolloquinoline quinone (PQQ), quinoprotein, sugar binding protein; HET: MSE; 1.50A {Escherichia coli K12}

Probab=96.22  E-value=0.25  Score=39.24  Aligned_cols=75  Identities=15%  Similarity=0.208  Sum_probs=44.3

Q ss_pred             CceeEEEeccCCCCeEEEEcCCCcEEEEecCCCCCCCCCCceeee----ccCCCCeeEEEEecC---CCcEEEEecC---
Q 021657          137 ADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKF----EGHSAAVLCVQWSPD---KSSVFGSSAE---  206 (309)
Q Consensus       137 ~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~----~~~~~~v~~~~~~~~---~~~l~~~~~~---  206 (309)
                      .....|+|.| +++.|+++...|.|++++.....    ...+..+    .........|+++|+   +.+++++-..   
T Consensus        18 ~~P~~i~~~p-dG~~l~V~e~~G~i~~~~~~g~~----~~~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lYv~~~~~~~   92 (353)
T 2g8s_A           18 DHPWALAFLP-DNHGMLITLRGGELRHWQAGKGL----SAPLSGVPDVWAHGQGGLLDVVLAPDFAQSRRIWLSYSEVGD   92 (353)
T ss_dssp             SSEEEEEECS-TTCCEEEEETTTEEEEEETTTEE----CCCCBSCCCCCCSTTCSEEEEEECTTHHHHCEEEEEEEEECS
T ss_pred             CCcEEEEEcC-CCCEEEEEeCCceEEEEeCCCce----eeEecCCcccccCCCCCceeEEECCCCCCCCEEEEEEeCCCC
Confidence            4568999999 88834445568999999853210    0111111    122345789999996   5556655433   


Q ss_pred             ----CCcEEEEeCC
Q 021657          207 ----DGLLNIWDYE  216 (309)
Q Consensus       207 ----dg~i~iwd~~  216 (309)
                          ...|..|++.
T Consensus        93 ~g~~~~~v~r~~~~  106 (353)
T 2g8s_A           93 DGKAGTAVGYGRLS  106 (353)
T ss_dssp             SSCEEEEEEEEEEC
T ss_pred             CCCceeEEEEEEEC
Confidence                2345555554

>2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli}

Probab=96.19  E-value=0.15  Score=40.38  Aligned_cols=51  Identities=14%  Similarity=0.019  Sum_probs=28.6

Q ss_pred             CeEEEEEcCCCCcceEEEeeccCCceeEEEeccCCCCeEEEEcC------CCcEEEEec
Q 021657          114 SCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSA------DNSVRMFDR  166 (309)
Q Consensus       114 g~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~------dg~i~i~d~  166 (309)
                      ..+.+||..+.+......+......-.+++..  ++.+++.|+.      ...+..||+
T Consensus       168 ~~v~~yd~~~~~W~~~~~~p~~~~~~~~~~~~--~~~iyv~GG~~~~~~~~~~v~~~d~  224 (357)
T 2uvk_A          168 KFLLSFDPSTQQWSYAGESPWYGTAGAAVVNK--GDKTWLINGEAKPGLRTDAVFELDF  224 (357)
T ss_dssp             CEEEEEETTTTEEEEEEECSSCCCBSCEEEEE--TTEEEEECCEEETTEECCCEEEEEC
T ss_pred             ccEEEEeCCCCcEEECCCCCCCCcccccEEEE--CCEEEEEeeecCCCcccCceEEEEe
Confidence            57899999887754443322111111233332  5677777764      345777876

>1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A*

Probab=96.12  E-value=0.25  Score=36.09  Aligned_cols=111  Identities=13%  Similarity=0.102  Sum_probs=58.7

Q ss_pred             eEEEEEecCCCcEEEEEcCCCeEEEEEcCCCCcce-----EEEeeccCCceeEEEeccCCCCeEEEEcCCCcEEEEecCC
Q 021657           94 VEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPV-----IKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRN  168 (309)
Q Consensus        94 v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~-----~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~  168 (309)
                      -.++.|.|+| .+.++  .||.|.-++..+.....     ...-...=..+..|.+.| ++.+.++.  |+.++  ....
T Consensus        90 F~a~~fD~~G-~LYav--~dG~iyr~~pP~~~~~~Wl~~a~~vg~~gw~~~~~lff~p-~G~Lyav~--dg~ly--r~~~  161 (236)
T 1tl2_A           90 FQFLFFDPNG-YLYAV--SKDKLYKASPPQSDTDNWIARATEVGSGGWSGFKFLFFHP-NGYLYAVH--GQQFY--KALP  161 (236)
T ss_dssp             CSEEEECTTS-CEEEE--ETTEEEEESCCCSTTCCHHHHSEEEECSSGGGEEEEEECT-TSCEEEEE--TTEEE--EECC
T ss_pred             ceEEEECCCC-CEEEe--CCCEEEEeCCCcCCCCceeccccEeccCCCCceEEEEECC-CceEEEEe--CCcEE--ecCC
Confidence            3688999998 55555  56999877753322110     111111224679999999 88888777  77743  3222


Q ss_pred             CCCCCCCC--ceeeec-cCCCCeeEEEEecCCCcEEEEecCCCcEEEEeCCc
Q 021657          169 LTSNGVGS--PINKFE-GHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEK  217 (309)
Q Consensus       169 ~~~~~~~~--~~~~~~-~~~~~v~~~~~~~~~~~l~~~~~~dg~i~iwd~~~  217 (309)
                      +......-  ....+. ..-..-+.+.|.+++. |+++.  ++.  +|....
T Consensus       162 P~~~~~~wl~~~~~~g~~g~~~yr~l~f~~~G~-l~~v~--~g~--~Y~~~~  208 (236)
T 1tl2_A          162 PVSNQDNWLARATKIGQGGWDTFKFLFFSSVGT-LFGVQ--GGK--FYEDYP  208 (236)
T ss_dssp             CSSTTCCHHHHCEEEESSSGGGEEEEEECTTSC-EEEEE--TTE--EEEESC
T ss_pred             CCCCCcccccccceeccCCcceEEEEEECCCCc-EEEEe--CCe--EEecCC
Confidence            21110000  001111 1122344567889887 45443  664  454443

>1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A

Probab=96.06  E-value=0.5  Score=39.01  Aligned_cols=28  Identities=14%  Similarity=0.109  Sum_probs=21.1

Q ss_pred             eEEEEECCCCCEEEEecCCCcEEEEeCC
Q 021657           12 EFALAMCPTEPYVLSGGKDKSVVLWSIQ   39 (309)
Q Consensus        12 V~~~~~~~~~~~l~t~~~dg~i~vwd~~   39 (309)
                      .+.|+|.|+|+++++-...+.|++++..
T Consensus        29 P~~~a~~pdG~l~V~e~~gg~I~~~~~~   56 (454)
T 1cru_A           29 PHALLWGPDNQIWLTERATGKILRVNPE   56 (454)
T ss_dssp             EEEEEECTTSCEEEEETTTCEEEEECTT
T ss_pred             ceEEEEcCCCcEEEEEcCCCEEEEEECC
Confidence            4799999999977765544578877754

>2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus}

Probab=96.01  E-value=0.4  Score=37.54  Aligned_cols=108  Identities=9%  Similarity=0.115  Sum_probs=62.4

Q ss_pred             CCeEEEEEecCCCcEEEEEcCCCeEEEEEcCCCCcceEEEeeccCCceeEEEeccCCCCeEEEEcCCCcEEEEec--CCC
Q 021657           92 DTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDR--RNL  169 (309)
Q Consensus        92 ~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~--~~~  169 (309)
                      ..+..+.+.+++ ..++.+ .+|.|.. ....++. -..........+..+.+.| ++.+++.+...+..+-.|-  .+ 
T Consensus       122 ~~~~~i~~~~~~-~~~~~~-~~g~v~~-S~DgG~t-W~~~~~~~~~~~~~~~~~~-~~~~~~~g~~G~~~~S~d~gG~t-  195 (327)
T 2xbg_A          122 GSPRLIKALGNG-SAEMIT-NVGAIYR-TKDSGKN-WQALVQEAIGVMRNLNRSP-SGEYVAVSSRGSFYSTWEPGQTA-  195 (327)
T ss_dssp             SCEEEEEEEETT-EEEEEE-TTCCEEE-ESSTTSS-EEEEECSCCCCEEEEEECT-TSCEEEEETTSSEEEEECTTCSS-
T ss_pred             CCeEEEEEECCC-CEEEEe-CCccEEE-EcCCCCC-CEEeecCCCcceEEEEEcC-CCcEEEEECCCcEEEEeCCCCCc-
Confidence            346677777766 656555 4554432 1222331 2223334456788999999 7777777654443444443  22 


Q ss_pred             CCCCCCCceeeeccCCCCeeEEEEecCCCcEEEEecCCCcEEEEe
Q 021657          170 TSNGVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWD  214 (309)
Q Consensus       170 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~dg~i~iwd  214 (309)
                           .+.+.  ......+..+.+.+++. ++ ..+.+|.+++.+
T Consensus       196 -----W~~~~--~~~~~~~~~~~~~~~g~-~~-~~~~~G~~~~s~  231 (327)
T 2xbg_A          196 -----WEPHN--RTTSRRLHNMGFTPDGR-LW-MIVNGGKIAFSD  231 (327)
T ss_dssp             -----CEEEE--CCSSSCEEEEEECTTSC-EE-EEETTTEEEEEE
T ss_pred             -----eeECC--CCCCCccceeEECCCCC-EE-EEeCCceEEEec
Confidence                 33332  22356788999999987 45 444578877764

>3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A*

Probab=95.80  E-value=0.54  Score=37.35  Aligned_cols=106  Identities=13%  Similarity=0.076  Sum_probs=57.8

Q ss_pred             eEEEEECCCCCEEEEecCCCcEEEEeCCccccccccCCccccccCCCCceeecCCCCCCCCcccCCCCCcCccccccccc
Q 021657           12 EFALAMCPTEPYVLSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHE   91 (309)
Q Consensus        12 V~~~~~~~~~~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   91 (309)
                      .+.++|.|+|+++++ ..+|.|++++.. +. . ....                                  +.......
T Consensus        31 P~~ia~~pdG~l~V~-e~~g~I~~~d~~-G~-~-~~~~----------------------------------~~v~~~g~   72 (354)
T 3a9g_A           31 PWSIAPLGGGRYLVT-ERPGRLVLISPS-GK-K-LVAS----------------------------------FDVANVGE   72 (354)
T ss_dssp             EEEEEEEETTEEEEE-ETTTEEEEECSS-CE-E-EEEE----------------------------------CCCCCSTT
T ss_pred             CeEEEEcCCCeEEEE-eCCCEEEEEeCC-Cc-e-Eeec----------------------------------cceeecCC
Confidence            479999999985554 556999888732 21 0 0000                                  00011112


Q ss_pred             CCeEEEEEecC---CCcEEEEEcC---C----CeEEEEEcCCC--Cc---ce-EEEeec-cCCceeEEEeccCCCCeEEE
Q 021657           92 DTVEDVTFCPS---SAQEFCSVGD---D----SCLILWDARVG--TS---PV-IKVEKA-HDADLHCVDWNPLDDNLILT  154 (309)
Q Consensus        92 ~~v~~~~~~~~---~~~~l~s~~~---d----g~i~iwd~~~~--~~---~~-~~~~~~-~~~~v~~~~~~~~~~~~l~~  154 (309)
                      .....|+++|+   +..++++-..   +    ..|..|+....  ..   .. ...+.. .......|+|.| ++.++++
T Consensus        73 ~g~~gia~~pdf~~~g~lyv~~~~~~~~~~~~~~v~r~~~~~~~~~~~~~~~l~~~~~~~~~h~~~~l~~~p-DG~Lyvt  151 (354)
T 3a9g_A           73 AGLLGLALHPEFPKKSWVYLYASYFAEGGHIRNRVIRGRLDGSTFKLKEVKTLIDGIPGAYIHNGGRIRFGP-DGMLYIT  151 (354)
T ss_dssp             CSEEEEEECTTTTTSCEEEEEEEEECGGGCEEEEEEEEEECSSSCCEEEEEEEEEEEECCSSCCCCCEEECT-TSCEEEE
T ss_pred             CceeeEEeCCCCCcCCEEEEEEeccCCCCCcceEEEEEEECCCCcCcCccEEEEEcCCCCCCcCCceEEECC-CCcEEEE
Confidence            45788999997   4355554432   3    56777877544  10   01 111211 112346799999 8887766


Q ss_pred             Ec
Q 021657          155 GS  156 (309)
Q Consensus       155 ~~  156 (309)
                      -+
T Consensus       152 ~G  153 (354)
T 3a9g_A          152 TG  153 (354)
T ss_dssp             CC
T ss_pred             EC
Confidence            43

>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens}

Probab=95.58  E-value=0.59  Score=36.23  Aligned_cols=103  Identities=9%  Similarity=0.062  Sum_probs=53.6

Q ss_pred             cEEEEEcCC--------CeEEEEEcCCCCcceEEEeeccCCceeEEEeccCCCCeEEEEcC-C-----CcEEEEecCCCC
Q 021657          105 QEFCSVGDD--------SCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSA-D-----NSVRMFDRRNLT  170 (309)
Q Consensus       105 ~~l~s~~~d--------g~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~-d-----g~i~i~d~~~~~  170 (309)
                      .+++.|+.+        ..+.+||..+.+......+...... .+++. - ++.+++.|+. +     ..+.+||+.+..
T Consensus       100 ~lyv~GG~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~-~~~~~-~-~~~iyv~GG~~~~~~~~~~~~~yd~~~~~  176 (315)
T 4asc_A          100 SIYVVGGREIKDGERCLDSVMCYDRLSFKWGESDPLPYVVYG-HTVLS-H-MDLVYVIGGKGSDRKCLNKMCVYDPKKFE  176 (315)
T ss_dssp             EEEEECCEESSTTCCBCCCEEEEETTTTEEEECCCCSSCCBS-CEEEE-E-TTEEEEECCBCTTSCBCCCEEEEETTTTE
T ss_pred             EEEEEeCCcCCCCCcccceEEEECCCCCcEeECCCCCCcccc-eeEEE-E-CCEEEEEeCCCCCCcccceEEEEeCCCCe
Confidence            667777632        4588999887663222222111111 22222 2 5677888876 2     468899988632


Q ss_pred             CCCCCCceeeeccCCCCeeEEEEecCCCcEEEEecCCC-----cEEEEeCCc
Q 021657          171 SNGVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAEDG-----LLNIWDYEK  217 (309)
Q Consensus       171 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~dg-----~i~iwd~~~  217 (309)
                          ...+..+........++.+  ++. +++.|+.++     .+.+||+.+
T Consensus       177 ----W~~~~~~p~~r~~~~~~~~--~~~-iyv~GG~~~~~~~~~~~~yd~~~  221 (315)
T 4asc_A          177 ----WKELAPMQTARSLFGATVH--DGR-IIVAAGVTDTGLTSSAEVYSITD  221 (315)
T ss_dssp             ----EEECCCCSSCCBSCEEEEE--TTE-EEEEEEECSSSEEEEEEEEETTT
T ss_pred             ----EEECCCCCCchhceEEEEE--CCE-EEEEeccCCCCccceEEEEECCC
Confidence                2222222211111222222  444 666776554     478888876

>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens}

Probab=95.51  E-value=0.63  Score=36.09  Aligned_cols=92  Identities=11%  Similarity=0.057  Sum_probs=45.1

Q ss_pred             EEEEEcCCCCcceEEEeeccCCceeEEEeccCCCCeEEEEcCC--------CcEEEEecCCCCCCCCCCceeeeccCCCC
Q 021657          116 LILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSAD--------NSVRMFDRRNLTSNGVGSPINKFEGHSAA  187 (309)
Q Consensus       116 i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d--------g~i~i~d~~~~~~~~~~~~~~~~~~~~~~  187 (309)
                      +..||..+.+......+...... .+++..  ++.+++.|+.+        ..+.+||..+..    .+.+..+......
T Consensus        69 ~~~~d~~~~~W~~~~~~p~~r~~-~~~~~~--~~~lyv~GG~~~~~~~~~~~~~~~~d~~~~~----W~~~~~~p~~r~~  141 (315)
T 4asc_A           69 FLQFDHLDSEWLGMPPLPSPRCL-FGLGEA--LNSIYVVGGREIKDGERCLDSVMCYDRLSFK----WGESDPLPYVVYG  141 (315)
T ss_dssp             EEEEETTTTEEEECCCBSSCEES-CEEEEE--TTEEEEECCEESSTTCCBCCCEEEEETTTTE----EEECCCCSSCCBS
T ss_pred             eEEecCCCCeEEECCCCCcchhc-eeEEEE--CCEEEEEeCCcCCCCCcccceEEEECCCCCc----EeECCCCCCcccc
Confidence            77888877663222111111111 122222  56777777742        458889987632    2222222211111


Q ss_pred             eeEEEEecCCCcEEEEecC-C-----CcEEEEeCCc
Q 021657          188 VLCVQWSPDKSSVFGSSAE-D-----GLLNIWDYEK  217 (309)
Q Consensus       188 v~~~~~~~~~~~l~~~~~~-d-----g~i~iwd~~~  217 (309)
                      . +++. -++. +++.|+. +     ..+.+||..+
T Consensus       142 ~-~~~~-~~~~-iyv~GG~~~~~~~~~~~~~yd~~~  174 (315)
T 4asc_A          142 H-TVLS-HMDL-VYVIGGKGSDRKCLNKMCVYDPKK  174 (315)
T ss_dssp             C-EEEE-ETTE-EEEECCBCTTSCBCCCEEEEETTT
T ss_pred             e-eEEE-ECCE-EEEEeCCCCCCcccceEEEEeCCC
Confidence            2 2222 3444 6667765 2     4588888876

>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus}

Probab=95.40  E-value=0.7  Score=35.89  Aligned_cols=103  Identities=11%  Similarity=0.131  Sum_probs=51.9

Q ss_pred             cEEEEEcCC-------CeEEEEEcCCCCcceEEEeeccCCceeEEEeccCCCCeEEEEcC------CCcEEEEecCCCCC
Q 021657          105 QEFCSVGDD-------SCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSA------DNSVRMFDRRNLTS  171 (309)
Q Consensus       105 ~~l~s~~~d-------g~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~------dg~i~i~d~~~~~~  171 (309)
                      .+++.|+.+       ..+.+||..+.+......+...... .+++. . ++.+++.|+.      -..+.+||+.+.. 
T Consensus       111 ~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~-~~~~~-~-~~~iyv~GG~~~~~~~~~~~~~yd~~~~~-  186 (318)
T 2woz_A          111 KIYVVAGKDLQTEASLDSVLCYDPVAAKWSEVKNLPIKVYG-HNVIS-H-NGMIYCLGGKTDDKKCTNRVFIYNPKKGD-  186 (318)
T ss_dssp             EEEEEEEEBTTTCCEEEEEEEEETTTTEEEEECCCSSCEES-CEEEE-E-TTEEEEECCEESSSCBCCCEEEEETTTTE-
T ss_pred             EEEEEcCccCCCCcccceEEEEeCCCCCEeECCCCCCcccc-cEEEE-E-CCEEEEEcCCCCCCCccceEEEEcCCCCE-
Confidence            677777653       3578888877664322211111111 12222 2 6777777764      2358899988732 


Q ss_pred             CCCCCceeeeccCCCCeeEEEEecCCCcEEEEecCC-----CcEEEEeCCc
Q 021657          172 NGVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAED-----GLLNIWDYEK  217 (309)
Q Consensus       172 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~d-----g~i~iwd~~~  217 (309)
                         ...+..+....... +++.. ++. +++.|+.+     ..+.+||+.+
T Consensus       187 ---W~~~~~~p~~r~~~-~~~~~-~~~-iyv~GG~~~~~~~~~~~~yd~~~  231 (318)
T 2woz_A          187 ---WKDLAPMKTPRSMF-GVAIH-KGK-IVIAGGVTEDGLSASVEAFDLKT  231 (318)
T ss_dssp             ---EEEECCCSSCCBSC-EEEEE-TTE-EEEEEEEETTEEEEEEEEEETTT
T ss_pred             ---EEECCCCCCCcccc-eEEEE-CCE-EEEEcCcCCCCccceEEEEECCC
Confidence               22222222111112 22222 344 66677643     3467888776

>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A*

Probab=95.38  E-value=1.3  Score=38.88  Aligned_cols=109  Identities=16%  Similarity=0.170  Sum_probs=60.5

Q ss_pred             CCCcEEEEEcCC------CeEEEEEcCCCCcceEEEeeccCCceeEEEeccCCCCeEEEEcCCC--cEEEEecCCCCCCC
Q 021657          102 SSAQEFCSVGDD------SCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADN--SVRMFDRRNLTSNG  173 (309)
Q Consensus       102 ~~~~~l~s~~~d------g~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg--~i~i~d~~~~~~~~  173 (309)
                      ++ .+++.|+.+      ..+.+||..+.++.....+... ..-.+++... ++.+++.|+.++  .+.+||..+..   
T Consensus       451 ~~-~lyv~GG~~~~~~~~~dv~~yd~~t~~W~~~~~~p~~-R~~h~~~~~~-~~~iyv~GG~~~~~~v~~yd~~t~~---  524 (695)
T 2zwa_A          451 NN-QLLLIGGRKAPHQGLSDNWIFDMKTREWSMIKSLSHT-RFRHSACSLP-DGNVLILGGVTEGPAMLLYNVTEEI---  524 (695)
T ss_dssp             TT-EEEEECCBSSTTCBCCCCEEEETTTTEEEECCCCSBC-CBSCEEEECT-TSCEEEECCBCSSCSEEEEETTTTE---
T ss_pred             CC-EEEEEcCCCCCCCccccEEEEeCCCCcEEECCCCCCC-cccceEEEEc-CCEEEEECCCCCCCCEEEEECCCCc---
Confidence            45 677777743      3578899887664322222111 1122333333 678888887755  68999988732   


Q ss_pred             CCCceee---eccCCCCeeEEEEecCCCcEEEEecC--C-----CcEEEEeCCc
Q 021657          174 VGSPINK---FEGHSAAVLCVQWSPDKSSVFGSSAE--D-----GLLNIWDYEK  217 (309)
Q Consensus       174 ~~~~~~~---~~~~~~~v~~~~~~~~~~~l~~~~~~--d-----g~i~iwd~~~  217 (309)
                       ...+..   +........++.+..+...+++.|+.  +     ..+.+||+..
T Consensus       525 -W~~~~~~g~~p~~r~~~~a~v~~~~~~~iyv~GG~~~~~~~~~~~v~~yd~~~  577 (695)
T 2zwa_A          525 -FKDVTPKDEFFQNSLVSAGLEFDPVSKQGIILGGGFMDQTTVSDKAIIFKYDA  577 (695)
T ss_dssp             -EEECCCSSGGGGSCCBSCEEEEETTTTEEEEECCBCTTSSCBCCEEEEEEECT
T ss_pred             -eEEccCCCCCCCcccceeEEEEeCCCCEEEEECCcCCCCCeeeCcEEEEEccC
Confidence             222221   11122223345666653446777765  2     4588899877

>3das_A Putative oxidoreductase; aldose sugar dehydrogenase, beta propellor, PQQ, SGDH; HET: MSE ARA PQQ; 1.60A {Streptomyces coelicolor}

Probab=95.34  E-value=0.8  Score=36.19  Aligned_cols=117  Identities=14%  Similarity=0.150  Sum_probs=63.9

Q ss_pred             cccccCCeEEEEEecCCCcEEEEEcCCCeEEEEEcCCCCcceEEEe----eccCCceeEEEeccC---CCCeEEEE--cC
Q 021657           87 YNGHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPVIKVE----KAHDADLHCVDWNPL---DDNLILTG--SA  157 (309)
Q Consensus        87 ~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~----~~~~~~v~~~~~~~~---~~~~l~~~--~~  157 (309)
                      +...-...+.|+|.|+| .++++--..|.|++++...++...+..+    .........|+++|+   ++.+.++-  ..
T Consensus        27 va~gL~~P~~ia~~pdG-~llVter~~G~I~~v~~~~g~~~~v~~~~~v~~~g~~GllGia~~Pdf~~~g~lYv~yt~~~  105 (347)
T 3das_A           27 VATGLNSPWGLAPLPGG-DLLVSSRDEATITRVDAKTGRKTELGEVPGVSPSGEGGLLGIALSPDYASDHMVYAYFTSAS  105 (347)
T ss_dssp             EECCCSSEEEEEECTTS-CEEEEETTTCEEEEECTTTCCEEEEEECTTCCCBTTBSEEEEEECTTHHHHCEEEEEEECSS
T ss_pred             eecCCCCceEEEEcCCC-cEEEEEecCCEEEEEECCCCcEeeecccCceeecCCCCceeeEeccccccCCEEEEEEecCC
Confidence            33334567899999998 7777765589999998655552222211    123456789999982   24444432  23


Q ss_pred             CCcEEEEecCCCC----CCCCCCce-eeec-cCCCCeeEEEEecCCCcEEEEec
Q 021657          158 DNSVRMFDRRNLT----SNGVGSPI-NKFE-GHSAAVLCVQWSPDKSSVFGSSA  205 (309)
Q Consensus       158 dg~i~i~d~~~~~----~~~~~~~~-~~~~-~~~~~v~~~~~~~~~~~l~~~~~  205 (309)
                      ++.|.-|.+....    .....+.+ ..+. .....-..|.|.|||. |+++.+
T Consensus       106 ~~~v~R~~~~~~~~~~~~~~~~~~i~~~~p~~~~H~g~~l~fgpDG~-Lyvt~G  158 (347)
T 3das_A          106 DNRIVRMLYDEKKPSGEQLGAPDTVFRGIPKGVIHNGGRIAFGPDKM-LYAGTG  158 (347)
T ss_dssp             SEEEEEEEBCTTSCTTCCBCCCEEEEEEECCCSSCCCCCEEECTTSC-EEEECB
T ss_pred             CCEEEEEEeCCCCcccccCCCcEEEEEcCCCCCCccCccccCCCCCC-EEEEEC
Confidence            4455555554311    00001111 1222 1122346799999997 555543

>2g8s_A Glucose/sorbosone dehydrogenases; bladed beta-propellor, pyrolloquinoline quinone (PQQ), quinoprotein, sugar binding protein; HET: MSE; 1.50A {Escherichia coli K12}

Probab=95.19  E-value=0.91  Score=36.01  Aligned_cols=28  Identities=21%  Similarity=0.312  Sum_probs=21.0

Q ss_pred             eEEEEECCCCCEEEEecCCCcEEEEeCC
Q 021657           12 EFALAMCPTEPYVLSGGKDKSVVLWSIQ   39 (309)
Q Consensus        12 V~~~~~~~~~~~l~t~~~dg~i~vwd~~   39 (309)
                      .+.|+|.|+|++|+.+...|.|++++..
T Consensus        20 P~~i~~~pdG~~l~V~e~~G~i~~~~~~   47 (353)
T 2g8s_A           20 PWALAFLPDNHGMLITLRGGELRHWQAG   47 (353)
T ss_dssp             EEEEEECSTTCCEEEEETTTEEEEEETT
T ss_pred             cEEEEEcCCCCEEEEEeCCceEEEEeCC
Confidence            3699999999834445567999988854

>1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A

Probab=95.14  E-value=1.1  Score=36.88  Aligned_cols=111  Identities=10%  Similarity=0.162  Sum_probs=59.9

Q ss_pred             CCeEEEEEecCCCcEEEEEcCCCeEEEEEcCCCCcceEEEeec------cCCceeEEEeccCC---CCeEEEEcC-----
Q 021657           92 DTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPVIKVEKA------HDADLHCVDWNPLD---DNLILTGSA-----  157 (309)
Q Consensus        92 ~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~------~~~~v~~~~~~~~~---~~~l~~~~~-----  157 (309)
                      ...+.|+|.|+| .++++-...+.|++++...+....+..+..      ....+..|+|+| +   +..|.....     
T Consensus        27 ~~P~~~a~~pdG-~l~V~e~~gg~I~~~~~~~g~~~~~~~~~~~~~~~~g~~Gllgia~~P-df~~~g~lYv~~s~~~~~  104 (454)
T 1cru_A           27 NKPHALLWGPDN-QIWLTERATGKILRVNPESGSVKTVFQVPEIVNDADGQNGLLGFAFHP-DFKNNPYIYISGTFKNPK  104 (454)
T ss_dssp             SSEEEEEECTTS-CEEEEETTTCEEEEECTTTCCEEEEEECTTCCCCTTSSCSEEEEEECT-TTTTSCEEEEEEEEECTT
T ss_pred             CCceEEEEcCCC-cEEEEEcCCCEEEEEECCCCcEeEEecCCccccccCCCCceeEEEECC-CcCcCCEEEEEEeccccC
Confidence            456799999998 766665444578888765555222222211      245677999999 4   444444332     


Q ss_pred             --------CCcEEEEecCCCCCC-CCCCcee-eecc-CCCCeeEEEEecCCCcEEEEec
Q 021657          158 --------DNSVRMFDRRNLTSN-GVGSPIN-KFEG-HSAAVLCVQWSPDKSSVFGSSA  205 (309)
Q Consensus       158 --------dg~i~i~d~~~~~~~-~~~~~~~-~~~~-~~~~v~~~~~~~~~~~l~~~~~  205 (309)
                              ...|.-|+....... ...+.+. .+.. .......|+|.|||. |+++.+
T Consensus       105 ~~~~~~~~~~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~H~~~~l~f~pDG~-Lyv~~G  162 (454)
T 1cru_A          105 STDKELPNQTIIRRYTYNKSTDTLEKPVDLLAGLPSSKDHQSGRLVIGPDQK-IYYTIG  162 (454)
T ss_dssp             C--CCSCEEEEEEEEEEETTTTEEEEEEEEEEEECCCSSCCEEEEEECTTSC-EEEEEC
T ss_pred             CCccccccccEEEEEEECCCCCCcCCcEEEEEcCCCCCCCCCCeEeECCCCe-EEEEEC
Confidence                    124555554321000 0011121 1221 123468999999998 555544

>3ei3_A DNA damage-binding protein 1; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Homo sapiens} PDB: 3ei1_A* 3ei2_A* 3ei4_A* 4a0l_A* 3e0c_A* 3i7k_A* 3i7h_A* 3i7l_A* 3i7n_A* 3i7o_A* 3i7p_A* 3i89_A* 3i8c_A* 3i8e_A* 2b5l_A 2b5m_A 2hye_A* 4a11_A* 4a0k_C* 4a0a_A* ...

Probab=94.67  E-value=1.4  Score=41.18  Aligned_cols=157  Identities=6%  Similarity=0.034  Sum_probs=87.9

Q ss_pred             CCeEEEEE---ecCCCcEEEEEc----------CCCeEEEEEcCCCCcceEEEeeccCCceeEEEeccCCCCeEEEEcCC
Q 021657           92 DTVEDVTF---CPSSAQEFCSVG----------DDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSAD  158 (309)
Q Consensus        92 ~~v~~~~~---~~~~~~~l~s~~----------~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d  158 (309)
                      ..+.+++.   ..+...+|+.|.          ..|.|.++++...+...+. ....++++++++--  +|. |++| ..
T Consensus       829 E~~~sv~~v~~~~~~~~~lvVGTa~~~~~e~~~~~Gri~vf~v~~~kL~lv~-~~~v~g~v~al~~~--~g~-Lla~-ig  903 (1158)
T 3ei3_A          829 EYALSLVSCKLGKDPNTYFIVGTAMVYPEEAEPKQGRIVVFQYSDGKLQTVA-EKEVKGAVYSMVEF--NGK-LLAS-IN  903 (1158)
T ss_dssp             EEEEEEEEECCTTCCCCEEEEEEEECCTTCSSCCCEEEEEEEEETTEEEEEE-EEEESSCEEEEEEE--TTE-EEEE-ET
T ss_pred             cceEEEEEEEEccCCCEEEEEEeeecCCCCCCCCceEEEEEEEECCEEEEEE-EEEcCCcCEEEeee--CCE-EEEE-cC
Confidence            34455543   333346777776          3588999999744422222 23446788888754  454 4443 35


Q ss_pred             CcEEEEecCCCCCCCCCCcee-eeccCCCCeeEEEEecCCCcEEEEecCCCcEEEEeCCcccccccCCCCCcCCCCceee
Q 021657          159 NSVRMFDRRNLTSNGVGSPIN-KFEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFF  237 (309)
Q Consensus       159 g~i~i~d~~~~~~~~~~~~~~-~~~~~~~~v~~~~~~~~~~~l~~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~  237 (309)
                      ..|++|++..      .+.++ ..... ..+..+.....+.+ ++.|..-..+.++..+.....            -...
T Consensus       904 ~~l~vy~l~~------~~~L~~~~~~~-~~i~~~~l~~~~~~-I~vgD~~~Sv~~~~y~~~~~~------------L~~~  963 (1158)
T 3ei3_A          904 STVRLYEWTT------EKELRTECNHY-NNIMALYLKTKGDF-ILVGDLMRSVLLLAYKPMEGN------------FEEI  963 (1158)
T ss_dssp             TEEEEEEECT------TSCEEEEEEEC-CCSCEEEEEEETTE-EEEEESSBCEEEEEEETTTTE------------EEEE
T ss_pred             CEEEEEECCC------CceEEEEeecc-ccEEEEEEeccCCE-EEEEEhhheEEEEEEEcCCCe------------EEEE
Confidence            7899999986      43333 11111 12333344344554 457776677777665541111            1122


Q ss_pred             eecCCCcceeeEEEccCCCeEEEEecCCCCCCCCCCeEEEEEccc
Q 021657          238 QHAGHRDKVVDFHWNASDPWTVVSVSDDCDSTGGGGTLQIWRMSD  282 (309)
Q Consensus       238 ~~~~~~~~v~~~~~~~~~~~~~~s~s~d~~s~~~dg~v~vw~~~~  282 (309)
                      .-..+..+++++.+-.++ .++        .+..+|.+.+.....
T Consensus       964 a~D~~~~~vta~~~ld~~-t~l--------~aD~~gNl~vl~~~~  999 (1158)
T 3ei3_A          964 ARDFNPNWMSAVEILDDD-NFL--------GAENAFNLFVCQKDS  999 (1158)
T ss_dssp             EECCSCBCEEEEEEEETT-EEE--------EEETTSEEEEEEECT
T ss_pred             EeecccccEEEEEEEccC-cEE--------EEcCCCcEEEEecCC
Confidence            223456678888887544 444        233458999998874

>3das_A Putative oxidoreductase; aldose sugar dehydrogenase, beta propellor, PQQ, SGDH; HET: MSE ARA PQQ; 1.60A {Streptomyces coelicolor}

Probab=94.45  E-value=1.4  Score=34.75  Aligned_cols=110  Identities=10%  Similarity=0.124  Sum_probs=61.2

Q ss_pred             eEEEEECCCCCEEEEecCCCcEEEEeCCccccccccCCccccccCCCCceeecCCCCCCCCcccCCCCCcCccccccccc
Q 021657           12 EFALAMCPTEPYVLSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHE   91 (309)
Q Consensus        12 V~~~~~~~~~~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   91 (309)
                      -+.|+|.|+|.++++--..|.|++++..++.......                                  ....+....
T Consensus        34 P~~ia~~pdG~llVter~~G~I~~v~~~~g~~~~v~~----------------------------------~~~v~~~g~   79 (347)
T 3das_A           34 PWGLAPLPGGDLLVSSRDEATITRVDAKTGRKTELGE----------------------------------VPGVSPSGE   79 (347)
T ss_dssp             EEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEE----------------------------------CTTCCCBTT
T ss_pred             ceEEEEcCCCcEEEEEecCCEEEEEECCCCcEeeecc----------------------------------cCceeecCC
Confidence            4799999999988777668999988764321100000                                  000112234


Q ss_pred             CCeEEEEEecC---CCcEEEEE--cCCCeEEEEEcCCC-----C---cceE-EEee-ccCCceeEEEeccCCCCeEEEEc
Q 021657           92 DTVEDVTFCPS---SAQEFCSV--GDDSCLILWDARVG-----T---SPVI-KVEK-AHDADLHCVDWNPLDDNLILTGS  156 (309)
Q Consensus        92 ~~v~~~~~~~~---~~~~l~s~--~~dg~i~iwd~~~~-----~---~~~~-~~~~-~~~~~v~~~~~~~~~~~~l~~~~  156 (309)
                      .....|+++|+   +..++++-  ..++.|.-|.+...     .   ...+ ..+. ........|.|.| ++.++++.+
T Consensus        80 ~GllGia~~Pdf~~~g~lYv~yt~~~~~~v~R~~~~~~~~~~~~~~~~~~i~~~~p~~~~H~g~~l~fgp-DG~Lyvt~G  158 (347)
T 3das_A           80 GGLLGIALSPDYASDHMVYAYFTSASDNRIVRMLYDEKKPSGEQLGAPDTVFRGIPKGVIHNGGRIAFGP-DKMLYAGTG  158 (347)
T ss_dssp             BSEEEEEECTTHHHHCEEEEEEECSSSEEEEEEEBCTTSCTTCCBCCCEEEEEEECCCSSCCCCCEEECT-TSCEEEECB
T ss_pred             CCceeeEeccccccCCEEEEEEecCCCCEEEEEEeCCCCcccccCCCcEEEEEcCCCCCCccCccccCCC-CCCEEEEEC
Confidence            56789999985   32444432  24556666666541     1   1111 1121 1112346799999 888777754

>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus}

Probab=94.06  E-value=1.6  Score=33.81  Aligned_cols=103  Identities=13%  Similarity=0.082  Sum_probs=50.0

Q ss_pred             cEEEEEcC----CC-------eEEEEEcCCCCcceEEEeeccCCceeEEEeccCCCCeEEEEcCC-------CcEEEEec
Q 021657          105 QEFCSVGD----DS-------CLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSAD-------NSVRMFDR  166 (309)
Q Consensus       105 ~~l~s~~~----dg-------~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d-------g~i~i~d~  166 (309)
                      .+++.|+.    ++       .+..||..+.+......+....... +++..  ++.+++.|+.+       ..+.+||+
T Consensus        58 ~lyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~-~~~~~--~~~iyv~GG~~~~~~~~~~~~~~yd~  134 (318)
T 2woz_A           58 QVYVVGGLYVDEENKDQPLQSYFFQLDNVSSEWVGLPPLPSARCLF-GLGEV--DDKIYVVAGKDLQTEASLDSVLCYDP  134 (318)
T ss_dssp             CEEEEESSCC-------CCCBEEEEEETTTTEEEECSCBSSCBCSC-EEEEE--TTEEEEEEEEBTTTCCEEEEEEEEET
T ss_pred             EEEEECCcccCccccCCCccccEEEEeCCCCcEEECCCCCcccccc-ceEEE--CCEEEEEcCccCCCCcccceEEEEeC
Confidence            67777773    12       2778888776632222121111122 22222  56777777754       24778888


Q ss_pred             CCCCCCCCCCceeeeccCCCCeeEEEEecCCCcEEEEecC------CCcEEEEeCCc
Q 021657          167 RNLTSNGVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAE------DGLLNIWDYEK  217 (309)
Q Consensus       167 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~------dg~i~iwd~~~  217 (309)
                      .+..    ...+..+......- +++. .++. +++.|+.      -..+.+||..+
T Consensus       135 ~~~~----W~~~~~~p~~r~~~-~~~~-~~~~-iyv~GG~~~~~~~~~~~~~yd~~~  184 (318)
T 2woz_A          135 VAAK----WSEVKNLPIKVYGH-NVIS-HNGM-IYCLGGKTDDKKCTNRVFIYNPKK  184 (318)
T ss_dssp             TTTE----EEEECCCSSCEESC-EEEE-ETTE-EEEECCEESSSCBCCCEEEEETTT
T ss_pred             CCCC----EeECCCCCCccccc-EEEE-ECCE-EEEEcCCCCCCCccceEEEEcCCC
Confidence            7632    22222221111111 2222 3444 6667764      23588899876

>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A

Probab=93.67  E-value=1.2  Score=42.26  Aligned_cols=142  Identities=14%  Similarity=0.278  Sum_probs=89.3

Q ss_pred             CCCeEEEEEcCCCCcceEEEeeccCCceeEEEeccCCCCeEEEEcCCCcEEEEecCCCCCCCCCCceeeeccCCCCeeEE
Q 021657          112 DDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGHSAAVLCV  191 (309)
Q Consensus       112 ~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~v~~~  191 (309)
                      ....|.|.|+..+..+..+...+     -+.-.+| ..+.++.-. ..++.|||+.+      ...+..+.- ..+|.-=
T Consensus        46 ~~~~vvIidl~~~~~~~rrpi~A-----dsAIMnP-~~~iiALra-g~~lQiFnl~~------k~klks~~~-~e~VvfW  111 (1630)
T 1xi4_A           46 EQAQVVIIDMNDPSNPIRRPISA-----DSAIMNP-ASKVIALKA-GKTLQIFNIEM------KSKMKAHTM-TDDVTFW  111 (1630)
T ss_pred             CCceEEEEECCCCCCcccccccc-----hhhccCC-CcceEEEec-CCeEEEeehHH------hhhhccccc-CCCceEE
Confidence            33478888988776433222222     2334688 777777664 78999999998      666666654 3456556


Q ss_pred             EEecCCCcEEEEecCCCcEEEEeCCcccccccCCCCCcCCCCceeeeecCCCcceeeEEEccCCCeEEEEec-CCCCCCC
Q 021657          192 QWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKVVDFHWNASDPWTVVSVS-DDCDSTG  270 (309)
Q Consensus       192 ~~~~~~~~l~~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~s-~d~~s~~  270 (309)
                      .|-.+..  ++..+ +..|+-|++.....+.....+..        .+.  ...|..-.-+++..++++.|- .+  .+.
T Consensus       112 kWis~~~--l~lVT-~~aVyHW~~~~~s~P~k~fdR~~--------~L~--~~QIinY~~d~~~kW~~l~gi~~~--~~~  176 (1630)
T 1xi4_A          112 KWISLNT--VALVT-DNAVYHWSMEGESQPVKMFDRHS--------SLA--GCQIINYRTDAKQKWLLLTGISAQ--QNR  176 (1630)
T ss_pred             EecCCCe--eEEEc-CCeEEEeccCCCCccHHHHhcch--------hcc--cCeeEEeeeCCCCCeEEEEeeccC--CCc
Confidence            6665554  33333 56899999975333222111111        111  346777888898888877663 33  566


Q ss_pred             CCCeEEEEEccc
Q 021657          271 GGGTLQIWRMSD  282 (309)
Q Consensus       271 ~dg~v~vw~~~~  282 (309)
                      ..|.+.+|.+..
T Consensus       177 v~G~mQLyS~er  188 (1630)
T 1xi4_A          177 VVGAMQLYSVDR  188 (1630)
T ss_pred             ccceeeeeeccc
Confidence            779999999983

>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A*

Probab=93.64  E-value=1.8  Score=38.01  Aligned_cols=114  Identities=7%  Similarity=0.021  Sum_probs=58.6

Q ss_pred             CCCcEEEEEcCCC--eEEEEEcCCCCcceEEE---eeccCCceeEEEeccCCCCeEEEEcC--C-----CcEEEEecCCC
Q 021657          102 SSAQEFCSVGDDS--CLILWDARVGTSPVIKV---EKAHDADLHCVDWNPLDDNLILTGSA--D-----NSVRMFDRRNL  169 (309)
Q Consensus       102 ~~~~~l~s~~~dg--~i~iwd~~~~~~~~~~~---~~~~~~~v~~~~~~~~~~~~l~~~~~--d-----g~i~i~d~~~~  169 (309)
                      ++ .+++.|+.++  .+.+||..+.+......   .........++.+....+.+++.|+.  +     ..+..||+.+.
T Consensus       500 ~~-~iyv~GG~~~~~~v~~yd~~t~~W~~~~~~g~~p~~r~~~~a~v~~~~~~~iyv~GG~~~~~~~~~~~v~~yd~~~~  578 (695)
T 2zwa_A          500 DG-NVLILGGVTEGPAMLLYNVTEEIFKDVTPKDEFFQNSLVSAGLEFDPVSKQGIILGGGFMDQTTVSDKAIIFKYDAE  578 (695)
T ss_dssp             TS-CEEEECCBCSSCSEEEEETTTTEEEECCCSSGGGGSCCBSCEEEEETTTTEEEEECCBCTTSSCBCCEEEEEEECTT
T ss_pred             CC-EEEEECCCCCCCCEEEEECCCCceEEccCCCCCCCcccceeEEEEeCCCCEEEEECCcCCCCCeeeCcEEEEEccCC
Confidence            45 6777777654  68999998776432221   11122233345555522667788776  2     45889999873


Q ss_pred             CC--CCCCCceeeeccCCCCeeEEEEecCCCcEEEEecC--------CCcEEEEeCCc
Q 021657          170 TS--NGVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAE--------DGLLNIWDYEK  217 (309)
Q Consensus       170 ~~--~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~--------dg~i~iwd~~~  217 (309)
                      ..  ......+.........-.++....++. +++.|+.        ...+.+||+.+
T Consensus       579 ~w~~~~~W~~~~~~p~~~R~~~~~~~~~~~~-iyv~GG~~~~~~~~~~~~v~~yd~~t  635 (695)
T 2zwa_A          579 NATEPITVIKKLQHPLFQRYGSQIKYITPRK-LLIVGGTSPSGLFDRTNSIISLDPLS  635 (695)
T ss_dssp             CSSCCEEEEEEEECGGGCCBSCEEEEEETTE-EEEECCBCSSCCCCTTTSEEEEETTT
T ss_pred             ccccceEEEEcCCCCCCCcccceEEEeCCCE-EEEECCccCCCCCCCCCeEEEEECCC
Confidence            20  000011111110111112233333344 6667763        34588999876

>3ei3_A DNA damage-binding protein 1; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Homo sapiens} PDB: 3ei1_A* 3ei2_A* 3ei4_A* 4a0l_A* 3e0c_A* 3i7k_A* 3i7h_A* 3i7l_A* 3i7n_A* 3i7o_A* 3i7p_A* 3i89_A* 3i8c_A* 3i8e_A* 2b5l_A 2b5m_A 2hye_A* 4a11_A* 4a0k_C* 4a0a_A* ...

Probab=93.37  E-value=4.8  Score=37.65  Aligned_cols=113  Identities=13%  Similarity=0.122  Sum_probs=68.4

Q ss_pred             CCeEEEEEecCCCcEEEEEcCCCeEEEEEcCCCCcceEEEeeccCCceeEEEeccCC-----CCeEEEEcC-CCcEEEEe
Q 021657           92 DTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLD-----DNLILTGSA-DNSVRMFD  165 (309)
Q Consensus        92 ~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~-----~~~l~~~~~-dg~i~i~d  165 (309)
                      ..|...+.+.   ..++.++ ++.+.++++..++..... ...-...|.|+++.|..     +.++++|.. |++++|++
T Consensus       514 ~~I~~As~n~---~~vvva~-g~~l~~fel~~~~L~~~~-~~~l~~evscl~i~~~~~~~~~s~~~aVg~~~d~tv~I~s  588 (1158)
T 3ei3_A          514 KNISVASCNS---SQVVVAV-GRALYYLQIHPQELRQIS-HTEMEHEVACLDITPLGDSNGLSPLCAIGLWTDISARILK  588 (1158)
T ss_dssp             CCCCEEEECS---SEEEEEE-TTEEEEEEEETTEEEEEE-EEECSSCEEEEECCCCSSSTTCCSEEEEEETTTTEEEEEE
T ss_pred             CEEEEEEeCC---CEEEEEE-CCEEEEEEeeCCceeeec-ccCCCCceEEEEeecCCCCcccccEEEEEECCCCEEEEEE
Confidence            3566666543   2344444 578888887654321222 22345689999997621     368999986 99999999


Q ss_pred             cCCCCCCCCCCceeeecc-CCCCeeEEEEec--CCCcEEEEecCCCcEEEEeCC
Q 021657          166 RRNLTSNGVGSPINKFEG-HSAAVLCVQWSP--DKSSVFGSSAEDGLLNIWDYE  216 (309)
Q Consensus       166 ~~~~~~~~~~~~~~~~~~-~~~~v~~~~~~~--~~~~l~~~~~~dg~i~iwd~~  216 (309)
                      +..      .+.+....- ......++.+..  ...+| ..|-.||.+.-+.+.
T Consensus       589 L~~------l~~~~~~~L~~~~~p~si~l~~~~~~~~L-~igl~dG~l~~~~~d  635 (1158)
T 3ei3_A          589 LPS------FELLHKEMLGGEIIPRSILMTTFESSHYL-LCALGDGALFYFGLN  635 (1158)
T ss_dssp             TTT------CCEEEEEECCSSCCEEEEEEEEETTEEEE-EEEETTSEEEEEEEC
T ss_pred             CCC------CCeEEEEECCCCCCCcEEEEEEeCCCcEE-EEEeCCCeEEEEEEc
Confidence            987      555543321 122445555442  23444 488889988766654

>3s25_A Hypothetical 7-bladed beta-propeller-like protein; structural genomics, joint center F structural genomics, JCSG; 1.88A {Eubacterium rectale}

Probab=93.31  E-value=2.2  Score=32.96  Aligned_cols=101  Identities=11%  Similarity=0.091  Sum_probs=56.7

Q ss_pred             EEecCCCcEEEEEcCC-------------CeEEEEEcCCCCcceEEEeeccCCceeEEEeccCCCCeEEEEc--CC--Cc
Q 021657           98 TFCPSSAQEFCSVGDD-------------SCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGS--AD--NS  160 (309)
Q Consensus        98 ~~~~~~~~~l~s~~~d-------------g~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~--~d--g~  160 (309)
                      -+++++..+..+...+             ..|+..++...+.  ... ..  ..  +..|++ .++.|+-..  .+  ..
T Consensus        59 ~i~~~g~~Iyy~~~~~~~~~~~~~~~~n~~~Iy~i~~dg~~~--~~l-~~--~~--~~~~s~-~g~~Iy~~~~~~~~~~~  130 (302)
T 3s25_A           59 YINADKNYVYYVRNNNQKITSQTFFSYDRNSLCRIKRNGHGS--TVL-DP--DP--CIYASL-IGNYIYYLHYDTQTATS  130 (302)
T ss_dssp             EEEECSSEEEEEEECC------CCSSCCSEEEEEEETTSCCC--EEE-EC--SC--EEEEEE-ETTEEEEEEESSSSCEE
T ss_pred             eEEEcCCEEEEEECCCCcccccceeccCCCeEEEEeCCCCcc--eEe-ec--CC--ccEEEE-eCCEEEEEeecCCCCce
Confidence            4577775555555443             4677777766552  222 11  11  236677 677666554  33  44


Q ss_pred             EEEEecCCCCCCCCCCceeeeccCCCCeeEEEEecCCCcEEEEecCCCcEEEEeCCc
Q 021657          161 VRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEK  217 (309)
Q Consensus       161 i~i~d~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~dg~i~iwd~~~  217 (309)
                      |+..++..       .....+..+..    .+++++++.|+.+......|..-++..
T Consensus       131 Iy~~~~dG-------s~~~~lt~~~~----~~~~~~g~~iy~t~~g~~~Iy~~~l~g  176 (302)
T 3s25_A          131 LYRIRIDG-------EEKKKIKNHYL----FTCNTSDRYFYYNNPKNGQLYRYDTAS  176 (302)
T ss_dssp             EEEEETTS-------CCCEEEESSCC----CCSEEETTEEEEECTTTCCEEEEETTT
T ss_pred             EEEEECCC-------CCeEEEeCCCc----eEeeEECCEEEEEeCCCceEEEEECCC
Confidence            55555543       33344443322    456888988876765566777777654

>3sbq_A Nitrous-oxide reductase; beta-propeller, cupredoxin domain, copper-contain periplasmic, oxidoreductase; 1.70A {Pseudomonas stutzeri} PDB: 3sbp_A 3sbr_A 1qni_A

Probab=92.29  E-value=0.36  Score=40.53  Aligned_cols=80  Identities=11%  Similarity=0.180  Sum_probs=54.9

Q ss_pred             CCceeEEEeccCCCCeEEEEcC-CCcEEEEecCCCCC-------CCCCCceeeeccCCCCeeEEEEecCCCcEEEEecCC
Q 021657          136 DADLHCVDWNPLDDNLILTGSA-DNSVRMFDRRNLTS-------NGVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAED  207 (309)
Q Consensus       136 ~~~v~~~~~~~~~~~~l~~~~~-dg~i~i~d~~~~~~-------~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~d  207 (309)
                      ......+..+| +|+++++++. +.++.++|++....       ........+.+ ........+|.++| +.+.+---|
T Consensus       322 pksPHGv~vsP-DGkyi~v~GKLsptvtV~d~~k~~~~~~~k~~~~~~~~~ae~e-~GlGPlHt~Fd~~G-~aYTtlfid  398 (638)
T 3sbq_A          322 PKNPHGCNTSS-DGKYFIAAGKLSPTCSMIAIDKLPDLFAGKLADPRDVIVGEPE-LGLGPLHTTFDGRG-NAYTTLFID  398 (638)
T ss_dssp             SSSCCCEEECT-TSCEEEEECTTSSBEEEEEGGGHHHHHTTCCSCGGGGEEECCB-CCSCEEEEEECSSS-EEEEEETTT
T ss_pred             CCCCcceeeCC-CCCEEEEcCCCCCeEEEEEeehhhhhhhccccCcccceEeecc-CCCcccEEEECCCC-ceEeeeeec
Confidence            45567889999 8887777655 78999999985211       00011122233 23456788999999 467788899


Q ss_pred             CcEEEEeCCcc
Q 021657          208 GLLNIWDYEKV  218 (309)
Q Consensus       208 g~i~iwd~~~~  218 (309)
                      ..|.-|++...
T Consensus       399 SqvvkWni~~a  409 (638)
T 3sbq_A          399 SQVVKWNMEEA  409 (638)
T ss_dssp             TEEEEEEHHHH
T ss_pred             ceEEEEeccHH
Confidence            99999999763

>3sbq_A Nitrous-oxide reductase; beta-propeller, cupredoxin domain, copper-contain periplasmic, oxidoreductase; 1.70A {Pseudomonas stutzeri} PDB: 3sbp_A 3sbr_A 1qni_A

Probab=90.89  E-value=2  Score=36.33  Aligned_cols=76  Identities=9%  Similarity=-0.064  Sum_probs=54.4

Q ss_pred             CCeEEEEEecCCCcEEEEEcCCCeEEEEEcCCC------C----cceEEEeeccCCceeEEEeccCCCCeEEEEcCCCcE
Q 021657           92 DTVEDVTFCPSSAQEFCSVGDDSCLILWDARVG------T----SPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSV  161 (309)
Q Consensus        92 ~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~------~----~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i  161 (309)
                      .....+..+|+|...+++|--+.++.++|++..      +    ...+.-...-.......+|.+ +|+...+-..|..|
T Consensus       323 ksPHGv~vsPDGkyi~v~GKLsptvtV~d~~k~~~~~~~k~~~~~~~~~ae~e~GlGPlHt~Fd~-~G~aYTtlfidSqv  401 (638)
T 3sbq_A          323 KNPHGCNTSSDGKYFIAAGKLSPTCSMIAIDKLPDLFAGKLADPRDVIVGEPELGLGPLHTTFDG-RGNAYTTLFIDSQV  401 (638)
T ss_dssp             SSCCCEEECTTSCEEEEECTTSSBEEEEEGGGHHHHHTTCCSCGGGGEEECCBCCSCEEEEEECS-SSEEEEEETTTTEE
T ss_pred             CCCcceeeCCCCCEEEEcCCCCCeEEEEEeehhhhhhhccccCcccceEeeccCCCcccEEEECC-CCceEeeeeecceE
Confidence            445678899999777777778999999998741      1    001111112234567889999 88777888899999


Q ss_pred             EEEecCC
Q 021657          162 RMFDRRN  168 (309)
Q Consensus       162 ~i~d~~~  168 (309)
                      .-|++..
T Consensus       402 vkWni~~  408 (638)
T 3sbq_A          402 VKWNMEE  408 (638)
T ss_dssp             EEEEHHH
T ss_pred             EEEeccH
Confidence            9999875

>2wg3_C Hedgehog-interacting protein; lipoprotein, development, membrane, secreted, protease, PALM hydrolase, developmental protein, autocatalytic cleavage; HET: NAG; 2.60A {Homo sapiens} PDB: 2wg4_B 2wfx_B 2wft_A 3ho3_A 3ho4_A 3ho5_A

Probab=89.87  E-value=7.5  Score=32.14  Aligned_cols=64  Identities=11%  Similarity=0.185  Sum_probs=38.6

Q ss_pred             CceeEEEeccCCCC-eEEEEcCCCcEEEEecCCCCCCCCCCceeeec---------cCCCCeeEEEEecC---CCcEEEE
Q 021657          137 ADLHCVDWNPLDDN-LILTGSADNSVRMFDRRNLTSNGVGSPINKFE---------GHSAAVLCVQWSPD---KSSVFGS  203 (309)
Q Consensus       137 ~~v~~~~~~~~~~~-~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~---------~~~~~v~~~~~~~~---~~~l~~~  203 (309)
                      ...+.|+|.| ++. .|+++...|.|++++......   ...+..+.         .....+..|+|+|+   ..+|+++
T Consensus        14 ~~P~~~a~~p-dG~~rl~V~er~G~i~~~~~~g~~~---~~~~~~~~~~~~~g~~~~~e~Gllgia~~P~f~~n~~lYv~   89 (463)
T 2wg3_C           14 RQPVGALHSG-DGSQRLFILEKEGYVKILTPEGEIF---KEPYLDIHKLVQSGIKGGDERGLLSLAFHPNYKKNGKLYVS   89 (463)
T ss_dssp             SSEEEEECCS-SSSCCEEEEETTTEEEEECTTSCBC---SSCSEECTTTBCCCCSSSCCCSEEEEEECTTHHHHCEEEEE
T ss_pred             CCceEEEECC-CCCeEEEEEeCCceEEEEeCCCCee---eeeecCCcceeccCccccCCCcceeeEeCCCCcCCCEEEEE
Confidence            4567999999 775 455667889999997542100   11222221         11456789999996   3335554


Q ss_pred             e
Q 021657          204 S  204 (309)
Q Consensus       204 ~  204 (309)
                      -
T Consensus        90 y   90 (463)
T 2wg3_C           90 Y   90 (463)
T ss_dssp             E
T ss_pred             E
Confidence            3

>3b7f_A Glycosyl hydrolase, BNR repeat; 7-bladed beta-propeller fold, structural genomics, joint CEN structural genomics, JCSG; 2.20A {Ralstonia eutropha}

Probab=88.04  E-value=9  Score=30.68  Aligned_cols=72  Identities=14%  Similarity=0.054  Sum_probs=35.8

Q ss_pred             CCeEEEEEecCC-CcEEEEEcCCCeEEEEEcCCCCcceEEEee----------------ccCCceeEEEeccCCCCeEEE
Q 021657           92 DTVEDVTFCPSS-AQEFCSVGDDSCLILWDARVGTSPVIKVEK----------------AHDADLHCVDWNPLDDNLILT  154 (309)
Q Consensus        92 ~~v~~~~~~~~~-~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~----------------~~~~~v~~~~~~~~~~~~l~~  154 (309)
                      ..|.++++.|.+ ...+..+...+.|...+-............                .....+.+|.++|.+...+..
T Consensus       115 ~~i~~l~~~~~~~~~~l~~g~~~ggl~~S~DgG~tW~~~~~~~~~p~~~~~~~~~~~g~~~~~~i~~i~~d~~~~~~l~v  194 (394)
T 3b7f_A          115 DHVFWLTPGHASEPGTWYAGTSPQGLFRSTDHGASWEPVAGFNDHPMRRAWTGGEQDGTPDGPKMHSILVDPRDPKHLYI  194 (394)
T ss_dssp             CEEEEEEECCTTSTTCEEEEEETTEEEEESSTTSBCEECHHHHTCTTHHHHHCCC----CCCCEEEEEEECTTCTTCEEE
T ss_pred             cceeEEEeCCCCCCCEEEEEecCCcEEEEcCCCCCeEECcCccCCccccccccccccCCCCCCceeEEEECCCCCCEEEE
Confidence            357888888632 244555555565554432111111111000                112357899998844455555


Q ss_pred             EcCCCcEEE
Q 021657          155 GSADNSVRM  163 (309)
Q Consensus       155 ~~~dg~i~i  163 (309)
                      +..++.|..
T Consensus       195 g~~~ggl~~  203 (394)
T 3b7f_A          195 GMSSGGVFE  203 (394)
T ss_dssp             EEETBEEEE
T ss_pred             EECCCCEEE
Confidence            554444443

>3b7f_A Glycosyl hydrolase, BNR repeat; 7-bladed beta-propeller fold, structural genomics, joint CEN structural genomics, JCSG; 2.20A {Ralstonia eutropha}

Probab=86.94  E-value=10  Score=30.28  Aligned_cols=65  Identities=14%  Similarity=0.157  Sum_probs=34.1

Q ss_pred             CCeEEEEEecCCCcEEEEEcCCCeEEEEEcCCCCcceEEEeec-----c--------CCceeEEEeccCCCCeEEEEcCC
Q 021657           92 DTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPVIKVEKA-----H--------DADLHCVDWNPLDDNLILTGSAD  158 (309)
Q Consensus        92 ~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~-----~--------~~~v~~~~~~~~~~~~l~~~~~d  158 (309)
                      ..+.+|.+.|..+..+..+..++.|...+- .++  .......     +        ...+.++.++|.+...+.++...
T Consensus       177 ~~i~~i~~d~~~~~~l~vg~~~ggl~~s~D-gG~--tW~~~~~~~~~~~~p~~~~~~g~~~~~i~~~~~~~~~l~vg~~~  253 (394)
T 3b7f_A          177 PKMHSILVDPRDPKHLYIGMSSGGVFESTD-AGT--DWKPLNRGCAANFLPDPNVEFGHDPHCVVQHPAAPDILYQQNHC  253 (394)
T ss_dssp             CEEEEEEECTTCTTCEEEEEETBEEEEESS-TTS--SCEECCTTCCCTTSSSSSSSSCBCEEEEEECSSSTTEEEEEETT
T ss_pred             CceeEEEECCCCCCEEEEEECCCCEEEECC-CCC--CceECCCCccccccCCCccccCcceeEEEECCCCCCEEEEEcCC
Confidence            457889998753344444544444444321 222  1111110     0        12488999998445677777655


Q ss_pred             C
Q 021657          159 N  159 (309)
Q Consensus       159 g  159 (309)
                      +
T Consensus       254 g  254 (394)
T 3b7f_A          254 G  254 (394)
T ss_dssp             E
T ss_pred             e
Confidence            4

>2wg3_C Hedgehog-interacting protein; lipoprotein, development, membrane, secreted, protease, PALM hydrolase, developmental protein, autocatalytic cleavage; HET: NAG; 2.60A {Homo sapiens} PDB: 2wg4_B 2wfx_B 2wft_A 3ho3_A 3ho4_A 3ho5_A

Probab=85.69  E-value=14  Score=30.54  Aligned_cols=27  Identities=7%  Similarity=-0.031  Sum_probs=21.6

Q ss_pred             EEEEECCCCC-EEEEecCCCcEEEEeCC
Q 021657           13 FALAMCPTEP-YVLSGGKDKSVVLWSIQ   39 (309)
Q Consensus        13 ~~~~~~~~~~-~l~t~~~dg~i~vwd~~   39 (309)
                      +.|+|.|+|. .|+.+...|.|++++..
T Consensus        17 ~~~a~~pdG~~rl~V~er~G~i~~~~~~   44 (463)
T 2wg3_C           17 VGALHSGDGSQRLFILEKEGYVKILTPE   44 (463)
T ss_dssp             EEEECCSSSSCCEEEEETTTEEEEECTT
T ss_pred             eEEEECCCCCeEEEEEeCCceEEEEeCC
Confidence            6999999996 56666778999999753

>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1

Probab=85.47  E-value=14  Score=30.35  Aligned_cols=236  Identities=9%  Similarity=0.032  Sum_probs=129.2

Q ss_pred             EEEECCCCCEEEEecCCCcEEEEeCCccccccccCC-ccccc--cCCCCceeecCCCCCCCCcccCCCC-CcCccccccc
Q 021657           14 ALAMCPTEPYVLSGGKDKSVVLWSIQDHITSSATDP-ATAKS--AGSSGSIIKQSPKPGDGNDKAADGP-SVGPRGIYNG   89 (309)
Q Consensus        14 ~~~~~~~~~~l~t~~~dg~i~vwd~~~~~~~~~~~~-~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~   89 (309)
                      +.-++|..+.+|.-. ..++.|+|+++........- .....  .-.......    .....++.|+.. ...+.+.+..
T Consensus        70 sAIMnP~~~iiALra-g~~lQiFnle~K~klks~~~~e~VvfWkWis~~~l~l----VT~taVyHWsi~~~s~P~kvFdR  144 (494)
T 1bpo_A           70 SAIMNPASKVIALKA-GKTLQIFNIEMKSKMKAHTMTDDVTFWKWISLNTVAL----VTDNAVYHWSMEGESQPVKMFDR  144 (494)
T ss_dssp             EEEECSSSSCEEEEE-TTEEEEEETTTTEEEEEEECSSCCCEEEEEETTEEEE----ECSSEEEEEESSSSCCCEEEEEC
T ss_pred             eeeeCCCCcEEEEec-CCeEEEEchHHhhhhcceecCCCceEEEecCCCeEEE----EcCCeeEEecccCCCCchhheec
Confidence            345688888777665 68999999987633322211 11110  000111111    123445666554 3345555555


Q ss_pred             cc----CCeEEEEEecCCCcEEEEEc------CCCeEEEEEcCCCCcceEEEeeccCCceeEEEeccC--CCCeEEEEcC
Q 021657           90 HE----DTVEDVTFCPSSAQEFCSVG------DDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPL--DDNLILTGSA  157 (309)
Q Consensus        90 ~~----~~v~~~~~~~~~~~~l~s~~------~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~--~~~~l~~~~~  157 (309)
                      |.    ..|.....+++.+-++++|-      -.|.+.+|..+...   .+.+.+|......+.....  ....|..+..
T Consensus       145 ~~~L~~~QIInY~~d~~~kW~~l~GI~~~~~~v~G~mQLYS~er~~---sQ~ieGhaa~F~~~~~~g~~~~~~lf~fa~r  221 (494)
T 1bpo_A          145 HSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRKV---SQPIEGHAASFAQFKMEGNAEESTLFCFAVR  221 (494)
T ss_dssp             CGGGTTCEEEEEEECTTSSEEEEEEEEEETTEEEEEEEEEESTTCC---EEEECCSEEEEEEEECTTCSSEEEEEEEEEC
T ss_pred             chhcccceEEEEEECCCCCeEEEEeecccCCcccceEEEeeccccc---cchheeeeeeeEEEecCCCCCCceEEEEEEe
Confidence            43    45677777888744444443      24788999987554   6667777766655554320  1123444433


Q ss_pred             C---CcEEEEecCCCC-CCCC-CCceeeec----cCCCCeeEEEEecCCCcEEEEecCCCcEEEEeCCcccccccCCCCC
Q 021657          158 D---NSVRMFDRRNLT-SNGV-GSPINKFE----GHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRT  228 (309)
Q Consensus       158 d---g~i~i~d~~~~~-~~~~-~~~~~~~~----~~~~~v~~~~~~~~~~~l~~~~~~dg~i~iwd~~~~~~~~~~~~~~  228 (309)
                      .   +.+++.++..+. ..+. .+....+.    ....-..++..++.-.. +..-+.-|.+++||+.+           
T Consensus       222 ~~~g~kLhi~Ei~~~~~~~~~f~kk~vdv~fppe~~~DFPvamqvs~kygv-iyviTK~G~i~lyDleT-----------  289 (494)
T 1bpo_A          222 GQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHDV-VFLITKYGYIHLYDLET-----------  289 (494)
T ss_dssp             STTCCEEEEEECSCCCTTCCCCCCEEEECCCCTTSTTCCEEEEEEETTTTE-EEEEETTSEEEEEETTT-----------
T ss_pred             cCCCcEEEEEEcCCCccCCCCccceeeeeeCCcccccCceeEEEecccCCE-EEEEecCceEEEEeccc-----------
Confidence            2   789999997641 1110 11111111    12334567888887774 45777899999999998           


Q ss_pred             cCCCCceeeeecCCCcceeeEEEccCCCeEEEEecCCCCCCCCCCeEEEEEcc
Q 021657          229 TNYPAGLFFQHAGHRDKVVDFHWNASDPWTVVSVSDDCDSTGGGGTLQIWRMS  281 (309)
Q Consensus       229 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~s~d~~s~~~dg~v~vw~~~  281 (309)
                          ..+++..+-....|-.-+-+....-+++ ....       |.|.--.++
T Consensus       290 ----gt~i~~nrIs~~~iF~t~~~~~~~Gi~~-Vnr~-------GqVl~v~v~  330 (494)
T 1bpo_A          290 ----GTCIYMNRISGETIFVTAPHEATAGIIG-VNRK-------GQVLSVCVE  330 (494)
T ss_dssp             ----CCEEEEEECCSSCEEEEEEETTTTEEEE-EETT-------CEEEEEEEC
T ss_pred             ----ceeeeeecccCCceEEecccCCCCcEEE-EccC-------ceEEEEEEc
Confidence                4555555544555544444433333332 2233       777666666

>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B

Probab=85.16  E-value=22  Score=32.53  Aligned_cols=31  Identities=10%  Similarity=0.124  Sum_probs=25.0

Q ss_pred             CeeEEEEecCCCcEEEEecCCCcEEEEeCCcc
Q 021657          187 AVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKV  218 (309)
Q Consensus       187 ~v~~~~~~~~~~~l~~~~~~dg~i~iwd~~~~  218 (309)
                      .+.+++..++..+++ +-+.|+++|+|++.+.
T Consensus       237 ~~~~~~~~~~~~~lf-tl~~D~~LRiWsl~t~  267 (950)
T 4gq2_M          237 TIISMIFLSTYNVLV-MLSLDYKLKVLDLSTN  267 (950)
T ss_dssp             CEEEEEEETTTTEEE-EEETTCEEEEEETTTT
T ss_pred             eEEEEeecCCCcEEE-EEECCCEEEEEECCCC
Confidence            466777788888655 7889999999999883

>2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli}

Probab=84.26  E-value=13  Score=29.07  Aligned_cols=51  Identities=8%  Similarity=0.029  Sum_probs=28.1

Q ss_pred             cEEEEEcC-C---------CeEEEEEcCCCCcceEEEee-ccCCceeEEEeccCCCCeEEEEcCC
Q 021657          105 QEFCSVGD-D---------SCLILWDARVGTSPVIKVEK-AHDADLHCVDWNPLDDNLILTGSAD  158 (309)
Q Consensus       105 ~~l~s~~~-d---------g~i~iwd~~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~~l~~~~~d  158 (309)
                      .+++.|+. +         ..+.+||..+.+........ .......++.  . ++.+++.|+.+
T Consensus        67 ~lyv~GG~~~~~~~~~~~~~~v~~yd~~~~~W~~~~~~~p~~r~~~~~~~--~-~~~iyv~GG~~  128 (357)
T 2uvk_A           67 NLYVFGGIGKNSEGLTQVFNDVHKYNPKTNSWVKLMSHAPMGMAGHVTFV--H-NGKAYVTGGVN  128 (357)
T ss_dssp             EEEEECCEEECTTSCEEECCCEEEEETTTTEEEECSCCCSSCCSSEEEEE--E-TTEEEEEECCC
T ss_pred             EEEEEcCCCCCCCccceeeccEEEEeCCCCcEEECCCCCCcccccceEEE--E-CCEEEEEeCcC
Confidence            66776665 2         46889998877643222222 1111222222  3 67888888765

>3no0_A DNA gyrase subunit A; DNA topology, topoisomerase, C-terminal DO gyrase, DNA binding protein, isomerase; HET: DNA GOL; 1.30A {Aquifex aeolicus}

Probab=83.98  E-value=12  Score=28.37  Aligned_cols=122  Identities=11%  Similarity=0.046  Sum_probs=71.9

Q ss_pred             cCCeEEEEEecC-CCcEEEEEcCCCeEEEEEcCCCC--c-c-eEEEeeccCCceeEEEeccCCCCeEEEEcCCCcEEEEe
Q 021657           91 EDTVEDVTFCPS-SAQEFCSVGDDSCLILWDARVGT--S-P-VIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFD  165 (309)
Q Consensus        91 ~~~v~~~~~~~~-~~~~l~s~~~dg~i~iwd~~~~~--~-~-~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d  165 (309)
                      ...|..+.. ++ ....++..+.+|.++-..+..-.  . . ....+. ..+.+..+.... +...++..+..|.+..+.
T Consensus        67 ~e~i~~v~~-~~~~~~~~v~~T~~G~iKr~~l~~~~~~~~G~~~i~lk-egD~l~~~~~~~-~~~~ill~T~~G~~~r~~  143 (276)
T 3no0_A           67 EEKIVGAFI-REKFGNRLLLATKKGYVKKIPLAEFEYKAQGMPIIKLT-EGDEVVSIASSV-DETHILLFTKKGRVARFS  143 (276)
T ss_dssp             TCCEEEEEE-GGGSCSEEEEEETTSEEEEEEGGGTTTCSTTEECSCCC-TTCCEEEEEECC-SSCEEEEEETTSEEEEEE
T ss_pred             CCEEEEEEC-CcCCCCEEEEEeCCCEEEEEEHHHhhhhcCCeEEEecC-CCCEEEEEEEeC-CCCEEEEEECCCEEEEEE
Confidence            345555543 32 23678889999999998875432  0 0 111122 234555555555 556777888899988877


Q ss_pred             cCCCCC---CCCCCceeeeccCCCCeeEEEEecCCCcEEEEecCCCcEEEEeCCc
Q 021657          166 RRNLTS---NGVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEK  217 (309)
Q Consensus       166 ~~~~~~---~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~dg~i~iwd~~~  217 (309)
                      ......   ...+.....+.. ...|..+...+++.+++ ..+..|.++...+..
T Consensus       144 ~~eip~~gR~a~Gv~~i~L~~-~d~vv~~~~~~~~~~ll-~~T~~G~~kr~~~~e  196 (276)
T 3no0_A          144 VREVPPSTPGARGVQGIKLEK-NDETSGLRIWNGEPYLL-VITAKGRVKKISHEE  196 (276)
T ss_dssp             GGGSCBCCTTCCCEECCCCCT-TCCEEEEEEESSCSEEE-EEETTSCEEEEEGGG
T ss_pred             hhhCCCcCCCCCCEEEEccCC-CCEEEEEEEeCCCCEEE-EEeCCCcEEEeEHHH
Confidence            654221   112333334443 34566665555555554 778899998888765

>2be1_A Serine/threonine-protein kinase/endoribonuclease; transcription; 2.98A {Saccharomyces cerevisiae}

Probab=80.83  E-value=3.5  Score=32.40  Aligned_cols=71  Identities=20%  Similarity=0.243  Sum_probs=41.0

Q ss_pred             cEEEEE-cCCCeEEEEEcCCCCcceEEEeec--cCCceeEEEecc--------CCCCeEEEEcCCCcEEEEecCCCCCCC
Q 021657          105 QEFCSV-GDDSCLILWDARVGTSPVIKVEKA--HDADLHCVDWNP--------LDDNLILTGSADNSVRMFDRRNLTSNG  173 (309)
Q Consensus       105 ~~l~s~-~~dg~i~iwd~~~~~~~~~~~~~~--~~~~v~~~~~~~--------~~~~~l~~~~~dg~i~i~d~~~~~~~~  173 (309)
                      ..++.. ..||.|..++..++..........  ...++.. .-.|        ..+..+++|+.+|.+...|+++     
T Consensus        57 ~~~vv~p~~dG~l~a~~~~~G~~~~~~~~~~lv~~SP~~~-~~~pvv~~~~~~~~~g~Vy~Gs~~g~l~ald~~t-----  130 (339)
T 2be1_A           57 ETLIIEPFGDGNIYYFNAHQGLQKLPLSIRQLVSTSPLHL-KTNIVVNDSGKIVEDEKVYTGSMRTIMYTINMLN-----  130 (339)
T ss_dssp             EEEEECCSTTTEEEEEETTTEEEEEEEEHHHHHTTCSEEE-ECC----------CCEEEEECEEEEEEEEEETTT-----
T ss_pred             cEEEEEECCCCEEEEEECCCCcEEeeeccccceecccccc-CCCceeecccccccCCEEEEEecCCEEEEEECCC-----
Confidence            334443 578999999887765221111110  1111211 0000        0356788899999999999998     


Q ss_pred             CCCceeeec
Q 021657          174 VGSPINKFE  182 (309)
Q Consensus       174 ~~~~~~~~~  182 (309)
                       ++.+.++.
T Consensus       131 -G~~~W~~~  138 (339)
T 2be1_A          131 -GEIISAFG  138 (339)
T ss_dssp             -CCEEEEES
T ss_pred             -CcEEEEEe
Confidence             77777775

>3s25_A Hypothetical 7-bladed beta-propeller-like protein; structural genomics, joint center F structural genomics, JCSG; 1.88A {Eubacterium rectale}

Probab=80.66  E-value=17  Score=27.91  Aligned_cols=102  Identities=12%  Similarity=0.061  Sum_probs=55.3

Q ss_pred             EEecCCCcEEEEEcCCCeEEEEEcCCCCcceEEEeeccCCceeEEEeccCCCCeEEEEcCC--CcEEEEecCCCCCCCCC
Q 021657           98 TFCPSSAQEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSAD--NSVRMFDRRNLTSNGVG  175 (309)
Q Consensus        98 ~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d--g~i~i~d~~~~~~~~~~  175 (309)
                      .++++++.++.+......|..-++....  ......   .... ..+.| .+.+|+-....  ..|..-++..       
T Consensus       151 ~~~~~g~~iy~t~~g~~~Iy~~~l~g~~--~~~l~~---~~~~-~~~~P-~g~~iy~t~~~~~~~I~~~~ldG-------  216 (302)
T 3s25_A          151 TCNTSDRYFYYNNPKNGQLYRYDTASQS--EALFYD---CNCY-KPVVL-DDTNVYYMDVNRDNAIVHVNINN-------  216 (302)
T ss_dssp             CSEEETTEEEEECTTTCCEEEEETTTTE--EEEEEC---SCEE-EEEEE-ETTEEEEEEGGGTTEEEEECSSS-------
T ss_pred             EeeEECCEEEEEeCCCceEEEEECCCCC--EEEEeC---CCcc-ceeee-cCCEEEEEEcCCCcEEEEEECCC-------
Confidence            4567775666665556788888876554  222222   2222 34568 66666554433  3566666654       


Q ss_pred             CceeeeccCCCCeeEEEEecCCCcEEEEec-CCCcEEEEeCCc
Q 021657          176 SPINKFEGHSAAVLCVQWSPDKSSVFGSSA-EDGLLNIWDYEK  217 (309)
Q Consensus       176 ~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-~dg~i~iwd~~~  217 (309)
                      .....+.  ...+  ..|+|++.+|+.+.. ..+.|..-++..
T Consensus       217 ~~~~~Lt--~~~~--~~~~~~g~~Iy~~~~~~~~~i~~~~~DG  255 (302)
T 3s25_A          217 PNPVVLT--EANI--EHYNVYGSLIFYQRGGDNPALCVVKNDG  255 (302)
T ss_dssp             CCCEECS--CSCE--EEEEEETTEEEEEECSSSCEEEEEETTS
T ss_pred             CCeEEEe--CCCc--ceEEECCCEEEEEECCCCcEEEEEECCC
Confidence            2333443  2233  348888988765432 334555555543

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	309
d1tbga_	340	b.69.4.1 (A:) beta1-subunit of the signal-transduc	1e-17
d1tbga_	340	b.69.4.1 (A:) beta1-subunit of the signal-transduc	1e-07
d1erja_	388	b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea	2e-14
d1erja_	388	b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea	3e-07
d1erja_	388	b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea	2e-04
d1erja_	388	b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea	0.004
d1vyhc1	317	b.69.4.1 (C:92-408) Platelet-activating factor ace	3e-14
d1vyhc1	317	b.69.4.1 (C:92-408) Platelet-activating factor ace	4e-10
d1vyhc1	317	b.69.4.1 (C:92-408) Platelet-activating factor ace	4e-05
d1yfqa_	342	b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Bake	1e-09
d1yfqa_	342	b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Bake	1e-07
d1yfqa_	342	b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Bake	2e-05
d1yfqa_	342	b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Bake	3e-05
d1yfqa_	342	b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Bake	8e-05
d1gxra_	337	b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum	2e-08
d1gxra_	337	b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum	6e-07
d1gxra_	337	b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum	4e-04
d1gxra_	337	b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum	0.002
d1p22a2	293	b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (be	7e-08
d1p22a2	293	b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (be	3e-05
d1p22a2	293	b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (be	6e-04
d1k8kc_	371	b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1	2e-07
d1k8kc_	371	b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1	2e-05
d1k8kc_	371	b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1	0.002
d1pgua1	325	b.69.4.1 (A:2-326) Actin interacting protein 1 {Ba	3e-07
d1pgua1	325	b.69.4.1 (A:2-326) Actin interacting protein 1 {Ba	6e-05
d1pgua1	325	b.69.4.1 (A:2-326) Actin interacting protein 1 {Ba	4e-04
d1sq9a_	393	b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Bake	5e-07
d1sq9a_	393	b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Bake	2e-05
d1sq9a_	393	b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Bake	0.001
d1nexb2	355	b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker'	6e-07
d1nexb2	355	b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker'	3e-05
d1nexb2	355	b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker'	0.002
d1qksa2	432	b.70.2.1 (A:136-567) C-terminal (heme d1) domain o	7e-07
d1qksa2	432	b.70.2.1 (A:136-567) C-terminal (heme d1) domain o	0.002
d1pgua2	287	b.69.4.1 (A:327-613) Actin interacting protein 1 {	1e-06
d1pgua2	287	b.69.4.1 (A:327-613) Actin interacting protein 1 {	6e-06
d1pgua2	287	b.69.4.1 (A:327-613) Actin interacting protein 1 {	2e-04
d1pgua2	287	b.69.4.1 (A:327-613) Actin interacting protein 1 {	0.004
d2ovrb2	342	b.69.4.1 (B:2365-2706) F-box/WD repeat-containing	1e-06
d2ovrb2	342	b.69.4.1 (B:2365-2706) F-box/WD repeat-containing	2e-06
d2ovrb2	342	b.69.4.1 (B:2365-2706) F-box/WD repeat-containing	2e-05
d2ovrb2	342	b.69.4.1 (B:2365-2706) F-box/WD repeat-containing	1e-04
d1hzua2	426	b.70.2.1 (A:118-543) C-terminal (heme d1) domain o	9e-06
d1nr0a1	311	b.69.4.1 (A:2-312) Actin interacting protein 1 {Ne	1e-05
d1nr0a1	311	b.69.4.1 (A:2-312) Actin interacting protein 1 {Ne	1e-04
d1nr0a1	311	b.69.4.1 (A:2-312) Actin interacting protein 1 {Ne	0.002
d1nr0a2	299	b.69.4.1 (A:313-611) Actin interacting protein 1 {	9e-05
d1nr0a2	299	b.69.4.1 (A:313-611) Actin interacting protein 1 {	1e-04
d1nr0a2	299	b.69.4.1 (A:313-611) Actin interacting protein 1 {	0.001
d1nr0a2	299	b.69.4.1 (A:313-611) Actin interacting protein 1 {	0.001
d1nr0a2	299	b.69.4.1 (A:313-611) Actin interacting protein 1 {	0.002
d1k32a3	360	b.69.9.1 (A:320-679) Tricorn protease domain 2 {Ar	1e-04
d1k32a3	360	b.69.9.1 (A:320-679) Tricorn protease domain 2 {Ar	3e-04

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 79.8 bits (195), Expect = 1e-17
 Identities = 31/147 (21%), Positives = 53/147 (36%), Gaps = 9/147 (6%)

Query: 68  PGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSP 127
             D + K  D      R  + GHE  +  + F P+    F +  DD+   L+D R     
Sbjct: 203 ACDASAKLWDVREGMCRQTFTGHESDINAICFFPNG-NAFATGSDDATCRLFDLRADQEL 261

Query: 128 VIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGHSAA 187
           +          +  V ++     L+L G  D +  ++D                 GH   
Sbjct: 262 MTYSHDNIICGITSVSFSK-SGRLLLAGYDDFNCNVWDALK------ADRAGVLAGHDNR 314

Query: 188 VLCVQWSPDKSSVFGSSAEDGLLNIWD 214
           V C+  + D  +V  + + D  L IW+
Sbjct: 315 VSCLGVTDDGMAVA-TGSWDSFLKIWN 340

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 50.1 bits (118), Expect = 1e-07
 Identities = 37/284 (13%), Positives = 81/284 (28%), Gaps = 36/284 (12%)

Query: 3   ILTGHQDNAEFALAMCPTEPYVLSGGKDKSVVLWSIQD----HITSSATDPATAKSAGSS 58
            L GH     +A+        ++S  +D  +++W        H     +      +   S
Sbjct: 50  TLRGHLA-KIYAMHWGTDSRLLVSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPS 108

Query: 59  GSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQEFCSVGDDSCLIL 118
           G+ +         +           R        T            +  +   D+   L
Sbjct: 109 GNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQIVTSSGDTTCAL 168

Query: 119 WDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPI 178
           WD   G           D     +  +     L ++G+ D S +++D R       G   
Sbjct: 169 WDIETGQQTTTFTGHTGDVMSLSLAPD---TRLFVSGACDASAKLWDVRE------GMCR 219

Query: 179 NKFEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQ 238
             F GH + +  + + P+  + F + ++D    ++D                    + + 
Sbjct: 220 QTFTGHESDINAICFFPN-GNAFATGSDDATCRLFDL-------------RADQELMTYS 265

Query: 239 HAGHRDKVVDFHWNASDPWTVVSVSDDCDSTGGGGTLQIWRMSD 282
           H      +    ++ S    +++  DD           +W    
Sbjct: 266 HDNIICGITSVSFSKSGRL-LLAGYDD-------FNCNVWDALK 301

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 71.0 bits (172), Expect = 2e-14
 Identities = 35/151 (23%), Positives = 59/151 (39%), Gaps = 23/151 (15%)

Query: 83  PRGIYNGHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPV----------IKVE 132
                 GH+D+V  V F     Q   S   D  + LW+ +   +                
Sbjct: 246 ENESGTGHKDSVYSVVFTRDG-QSVVSGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTY 304

Query: 133 KAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQ 192
             H   +  V     +D  IL+GS D  V  +D+++      G+P+   +GH  +V+ V 
Sbjct: 305 IGHKDFVLSVATTQ-NDEYILSGSKDRGVLFWDKKS------GNPLLMLQGHRNSVISVA 357

Query: 193 WSPDKS-----SVFGSSAEDGLLNIWDYEKV 218
            +   S     +VF + + D    IW Y+K+
Sbjct: 358 VANGSSLGPEYNVFATGSGDCKARIWKYKKI 388

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 49.0 bits (115), Expect = 3e-07
 Identities = 31/144 (21%), Positives = 54/144 (37%), Gaps = 13/144 (9%)

Query: 140 HCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNG-VGSPINKFEGHSAAVLCVQWSPDKS 198
             V  +P D   I  GS D +VR++D         + S      GH  +V  V ++ D  
Sbjct: 208 TTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQ 267

Query: 199 SVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKVVDFHWNASDPWT 258
           SV  S + D  + +W+ +    K +     +         + GH+D V+      +D + 
Sbjct: 268 SVV-SGSLDRSVKLWNLQNANNKSDSKTPNSGTC---EVTYIGHKDFVLSVATTQNDEY- 322

Query: 259 VVSVSDDCDSTGGGGTLQIWRMSD 282
           ++S S D         +  W    
Sbjct: 323 ILSGSKD-------RGVLFWDKKS 339

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 40.2 bits (92), Expect = 2e-04
 Identities = 10/124 (8%), Positives = 37/124 (29%), Gaps = 7/124 (5%)

Query: 141 CVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWSPDKSSV 200
            +D +       L    ++   +++        +   ++K   H++ V CV++S D   +
Sbjct: 20  LLDLDSQSVPDALKKQTNDYYILYNPA--LPREIDVELHKSLDHTSVVCCVKFSNDGEYL 77

Query: 201 FGSSAEDGLLNIWD---YEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKVVDFHWNASDPW 257
             ++  +    ++       V +  +      +               +    ++    +
Sbjct: 78  --ATGCNKTTQVYRVSDGSLVARLSDDSAANKDPENLNTSSSPSSDLYIRSVCFSPDGKF 135

Query: 258 TVVS 261
               
Sbjct: 136 LATG 139

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 35.9 bits (81), Expect = 0.004
 Identities = 29/140 (20%), Positives = 49/140 (35%), Gaps = 20/140 (14%)

Query: 2   EILTGHQDNAEFALAMCPTEPYVLSGGKDKSVVLWSIQD-------HITSSATDPATAKS 54
           E  TGH+D + +++        V+SG  D+SV LW++Q+          +S T   T   
Sbjct: 248 ESGTGHKD-SVYSVVFTRDGQSVVSGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIG 306

Query: 55  AGSSGSIIKQSPKP-------GDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSA--- 104
                  +  +           D      D  S  P  +  GH ++V  V     S+   
Sbjct: 307 HKDFVLSVATTQNDEYILSGSKDRGVLFWDKKSGNPLLMLQGHRNSVISVAVANGSSLGP 366

Query: 105 --QEFCSVGDDSCLILWDAR 122
               F +   D    +W  +
Sbjct: 367 EYNVFATGSGDCKARIWKYK 386

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 69.8 bits (169), Expect = 3e-14
 Identities = 33/221 (14%), Positives = 74/221 (33%), Gaps = 35/221 (15%)

Query: 17  MCPTEPYVLSGGKDKSVVLWSIQDH----ITSSATDPATAKSAGSSGSIIKQSPKPGDGN 72
           + P   +++S  +DK++ +W +Q        +   +          G++I       D  
Sbjct: 109 IMPNGDHIVSASRDKTIKMWEVQTGYCVKTFTGHREWVRMVRPNQDGTLIASCS--NDQT 166

Query: 73  DKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQE-------------------FCSVGDD 113
            +     +   +     H   VE +++ P S+                       S   D
Sbjct: 167 VRVWVVATKECKAELREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRD 226

Query: 114 SCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNG 173
             + +WD   G    +     HD  +  V ++      IL+ + D ++R++D +N     
Sbjct: 227 KTIKMWDVSTGM--CLMTLVGHDNWVRGVLFHS-GGKFILSCADDKTLRVWDYKN----- 278

Query: 174 VGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWD 214
               +     H   V  + +      V  + + D  + +W+
Sbjct: 279 -KRCMKTLNAHEHFVTSLDFHKTAPYVV-TGSVDQTVKVWE 317

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 57.4 bits (137), Expect = 4e-10
 Identities = 48/326 (14%), Positives = 92/326 (28%), Gaps = 59/326 (18%)

Query: 4   LTGHQDNAEFALAMCPTEPYVLSGGKDKSVVLWSIQDH-ITSSATDPATAKSAGSSGSII 62
           L+GH+      +   P    ++S  +D ++ +W  +      +      +    S     
Sbjct: 13  LSGHRSPV-TRVIFHPVFSVMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDHSG 71

Query: 63  KQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDAR 122
           K                            D          +     S   D  + +W+ +
Sbjct: 72  KLLASCSADMTIKLWDFQGFECIRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQ 131

Query: 123 VGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFE 182
             T   +K    H   +  V  N  D  LI + S D +VR++               +  
Sbjct: 132 --TGYCVKTFTGHREWVRMVRPNQ-DGTLIASCSNDQTVRVWVVATKE------CKAELR 182

Query: 183 GHSAAVLCVQWSPDKS-------------------SVFGSSAEDGLLNIWDYEKVGKKVE 223
            H   V C+ W+P+ S                       S + D  + +WD    G  + 
Sbjct: 183 EHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVST-GMCL- 240

Query: 224 QGPRTTNYPAGLFFQHAGHRDKVVDFHWNASDPWTVVSVSDDCDSTGGGGTLQIWRMSDL 283
                            GH + V    +++   + ++S +DD        TL++W   + 
Sbjct: 241 -------------MTLVGHDNWVRGVLFHSGGKF-ILSCADD-------KTLRVWDYKN- 278

Query: 284 IYRPQDEVLAELEKFKAHVISCTSKP 309
                   +  L   +  V S     
Sbjct: 279 -----KRCMKTLNAHEHFVTSLDFHK 299

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 42.4 bits (98), Expect = 4e-05
 Identities = 35/245 (14%), Positives = 72/245 (29%), Gaps = 54/245 (22%)

Query: 79  PSVGPRGIYNGHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPVIKVEKAHDAD 138
           P    +   +GH   V  V F P       S  +D+ + +WD   G     +  K H   
Sbjct: 5   PRPPEKYALSGHRSPVTRVIFHPVF-SVMVSASEDATIKVWDYETGD--FERTLKGHTDS 61

Query: 139 LHCVDWNPL-----------------------------------------DDNLILTGSA 157
           +  + ++                                           + + I++ S 
Sbjct: 62  VQDISFDHSGKLLASCSADMTIKLWDFQGFECIRTMHGHDHNVSSVSIMPNGDHIVSASR 121

Query: 158 DNSVRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEK 217
           D +++M++ +       G  +  F GH   V  V+ + D  ++  S + D  + +W    
Sbjct: 122 DKTIKMWEVQT------GYCVKTFTGHREWVRMVRPNQD-GTLIASCSNDQTVRVWVVAT 174

Query: 218 VGKKVEQGPRTTNYPAGLFFQHAGHRDKVVDFHWNASDPWTVVSVSDDCDSTGGGGTLQI 277
              K E            +   + +           S+            S     T+++
Sbjct: 175 KECKAELREHRHVVECISWAPESSY---SSISEATGSETKKSGKPGPFLLSGSRDKTIKM 231

Query: 278 WRMSD 282
           W +S 
Sbjct: 232 WDVST 236

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 56.4 bits (134), Expect = 1e-09
 Identities = 12/89 (13%), Positives = 31/89 (34%), Gaps = 4/89 (4%)

Query: 128 VIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGHSAA 187
           ++++E+A    +  +   P   +L+L  S D S+ ++             + +   +   
Sbjct: 3   IVQIEQAPKDYISDIKIIP-SKSLLLITSWDGSLTVYK---FDIQAKNVDLLQSLRYKHP 58

Query: 188 VLCVQWSPDKSSVFGSSAEDGLLNIWDYE 216
           +LC  +  +           G +   D  
Sbjct: 59  LLCCNFIDNTDLQIYVGTVQGEILKVDLI 87

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 50.2 bits (118), Expect = 1e-07
 Identities = 13/84 (15%), Positives = 26/84 (30%), Gaps = 2/84 (2%)

Query: 86  IYNGHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGT-SPVIKVEKAHDADLHCVDW 144
           I    +D + D+   PS          D  L ++   +   +  +     +   L C ++
Sbjct: 6   IEQAPKDYISDIKIIPSK-SLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNF 64

Query: 145 NPLDDNLILTGSADNSVRMFDRRN 168
               D  I  G+    +   D   
Sbjct: 65  IDNTDLQIYVGTVQGEILKVDLIG 88

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 42.9 bits (99), Expect = 2e-05
 Identities = 8/89 (8%), Positives = 30/89 (33%), Gaps = 13/89 (14%)

Query: 178 INKFEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFF 237
           +   +     +  ++  P   S+   ++ DG L ++ ++   K V+              
Sbjct: 4   VQIEQAPKDYISDIKIIPS-KSLLLITSWDGSLTVYKFDIQAKNVD------------LL 50

Query: 238 QHAGHRDKVVDFHWNASDPWTVVSVSDDC 266
           Q   ++  ++  ++  +    +   +   
Sbjct: 51  QSLRYKHPLLCCNFIDNTDLQIYVGTVQG 79

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 42.9 bits (99), Expect = 3e-05
 Identities = 29/286 (10%), Positives = 74/286 (25%), Gaps = 21/286 (7%)

Query: 2   EILTGHQDNAEFALAMCPTEPYVLSGGKDKSVVLWSIQD---------HITSSATDPATA 52
           +I    +D     + + P++  +L    D S+ ++              +          
Sbjct: 5   QIEQAPKD-YISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCN 63

Query: 53  KSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQEFCSVGD 112
               +   I   + +           PS         +        +           G 
Sbjct: 64  FIDNTDLQIYVGTVQGEILKVDLIGSPSFQALTNNEANLGICRICKYGDDKLIAASWDGL 123

Query: 113 DSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSN 172
              +   +   G   V  +   +    + +     + + ++ G  ++ V+ F    L   
Sbjct: 124 IEVIDPRNYGDGVIAVKNLNSNNTKVKNKIFTMDTNSSRLIVGMNNSQVQWFR---LPLC 180

Query: 173 GVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYP 232
              +   +  G    +  V   P +   +  S+ DG + +  ++  G       R     
Sbjct: 181 EDDNGTIEESGLKYQIRDVALLPKEQEGYACSSIDGRVAVEFFDDQGDDYNSSKRFAFRC 240

Query: 233 AGLFFQHAGHRDKVVDFHWNASDPWTVVSVSDDCDSTGGGGTLQIW 278
             L  +       V    ++      + +   D       G +  W
Sbjct: 241 HRLNLKDTNLAYPVNSIEFS-PRHKFLYTAGSD-------GIISCW 278

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 41.4 bits (95), Expect = 8e-05
 Identities = 28/188 (14%), Positives = 61/188 (32%), Gaps = 34/188 (18%)

Query: 112 DDSCLILWDARVGTSPVIKVEKAHDADLH-CVDWNPLDDNLILTGSADNSVRMFDRRNLT 170
           ++S +  +   +       +E++        V   P +       S D  V +    +  
Sbjct: 168 NNSQVQWFRLPLCEDDNGTIEESGLKYQIRDVALLPKEQEGYACSSIDGRVAVEFFDDQG 227

Query: 171 SNGVGSPINKF---------EGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKK 221
            +   S    F            +  V  +++SP    ++ +   DG+++ W+ +   KK
Sbjct: 228 DDYNSSKRFAFRCHRLNLKDTNLAYPVNSIEFSPRHKFLYTAG-SDGIISCWNLQT-RKK 285

Query: 222 VEQGPRTTNYPAGLFFQHAGHRDKVVDFHWNASDPWTVVSVSDD-------CDSTGGGGT 274
           ++   +              + D VV    +  D    ++ SDD        D T     
Sbjct: 286 IKNFAK-------------FNEDSVVKIACS--DNILCLATSDDTFKTNAAIDQTIELNA 330

Query: 275 LQIWRMSD 282
             I+ + D
Sbjct: 331 SSIYIIFD 338

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 52.1 bits (123), Expect = 2e-08
 Identities = 11/80 (13%), Positives = 30/80 (37%), Gaps = 9/80 (11%)

Query: 135 HDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWS 194
           H++ +  + +        ++   DN +  +          G+ I +    S++VL    S
Sbjct: 264 HESCVLSLKFAY-CGKWFVSTGKDNLLNAWRTPY------GASIFQS-KESSSVLSCDIS 315

Query: 195 PDKSSVFGSSAEDGLLNIWD 214
            D   +  + + D    +++
Sbjct: 316 VDDKYIV-TGSGDKKATVYE 334

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 47.9 bits (112), Expect = 6e-07
 Identities = 20/79 (25%), Positives = 32/79 (40%), Gaps = 5/79 (6%)

Query: 87  YNGHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNP 146
            + HE  V  + F     + F S G D+ L  W    G S     +    + +   D + 
Sbjct: 261 LHLHESCVLSLKFAYCG-KWFVSTGKDNLLNAWRTPYGAS---IFQSKESSSVLSCDISV 316

Query: 147 LDDNLILTGSADNSVRMFD 165
            DD  I+TGS D    +++
Sbjct: 317 -DDKYIVTGSGDKKATVYE 334

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.4 bits (90), Expect = 4e-04
 Identities = 9/70 (12%), Positives = 20/70 (28%), Gaps = 3/70 (4%)

Query: 135 HDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWS 194
           H   +  V  +      + TG     V+++D  +   N               +   +  
Sbjct: 50  HGEVVCAVTISN-PTRHVYTGG-KGCVKVWDISH-PGNKSPVSQLDCLNRDNYIRSCKLL 106

Query: 195 PDKSSVFGSS 204
           PD  ++    
Sbjct: 107 PDGCTLIVGG 116

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 36.7 bits (83), Expect = 0.002
 Identities = 18/102 (17%), Positives = 35/102 (34%), Gaps = 28/102 (27%)

Query: 184 HSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHR 243
           H + VL ++++      F S+ +D LLN W                    G     +   
Sbjct: 264 HESCVLSLKFAYC-GKWFVSTGKDNLLNAWRTPY----------------GASIFQSKES 306

Query: 244 DKVVDFHWNASDPWTVVSVSDDCDSTGGGGTLQIWRMSDLIY 285
             V+    +  D + +V+ S D           ++   ++IY
Sbjct: 307 SSVLSCDISVDDKY-IVTGSGD-------KKATVY---EVIY 337

>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 293

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 50.6 bits (119), Expect = 7e-08
 Identities = 27/149 (18%), Positives = 53/149 (35%), Gaps = 14/149 (9%)

Query: 69  GDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPV 128
           GD   K  +  +       NGH+  +  + +     +   S   D+ + LWD        
Sbjct: 156 GDRTIKVWNTSTCEFVRTLNGHKRGIACLQYRD---RLVVSGSSDNTIRLWDIEC----- 207

Query: 129 IKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRR---NLTSNGVGSPINKFEGHS 185
               +  +     V     D+  I++G+ D  ++++D     +  +      +     HS
Sbjct: 208 GACLRVLEGHEELVRCIRFDNKRIVSGAYDGKIKVWDLVAALDPRAPAGTLCLRTLVEHS 267

Query: 186 AAVLCVQWSPDKSSVFGSSAEDGLLNIWD 214
             V  +Q+         SS+ D  + IWD
Sbjct: 268 GRVFRLQFDE---FQIVSSSHDDTILIWD 293

>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 293

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.5 bits (98), Expect = 3e-05
 Identities = 42/312 (13%), Positives = 87/312 (27%), Gaps = 58/312 (18%)

Query: 1   MEILTGHQDNAEFALAMCPTEPYVLSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGS 60
           ++ +    + ++    +   +  ++SG +D ++ +W      T       T  +      
Sbjct: 5   LQRIHCRSETSKGVYCLQYDDQKIVSGLRDNTIKIWDKN---TLECKRILTGHTGSVLCL 61

Query: 61  IIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQEFCSVGDDSCLILWD 120
              +       +D       V    + N      E V     +     +   D  + +WD
Sbjct: 62  QYDERVIITGSSDSTVRVWDVNTGEMLNTLIHHCEAVLHLRFNNGMMVTCSKDRSIAVWD 121

Query: 121 ARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINK 180
               T   ++                 DD  I++ S D ++++++            +  
Sbjct: 122 MASPTDITLRRVLVGHRAAVN--VVDFDDKYIVSASGDRTIKVWNTST------CEFVRT 173

Query: 181 FEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYE------------------------ 216
             GH   + C+Q+      +  S + D  + +WD E                        
Sbjct: 174 LNGHKRGIACLQYRDR---LVVSGSSDNTIRLWDIECGACLRVLEGHEELVRCIRFDNKR 230

Query: 217 ----------KVGKKVEQGPRTTNYPAGLFFQHAGHRDKVVDFHWNASDPWTVVSVSDDC 266
                     KV   V                   H  +V    +   D + +VS S D 
Sbjct: 231 IVSGAYDGKIKVWDLVAALDPRAPAGTLCLRTLVEHSGRVFRLQF---DEFQIVSSSHD- 286

Query: 267 DSTGGGGTLQIW 278
                  T+ IW
Sbjct: 287 ------DTILIW 292

>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 293

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.3 bits (87), Expect = 6e-04
 Identities = 23/156 (14%), Positives = 53/156 (33%), Gaps = 13/156 (8%)

Query: 17  MCPTEPYVLSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAA 76
           +   + Y++S   D+++ +W+          +      A              D   +  
Sbjct: 144 VDFDDKYIVSASGDRTIKVWNTSTCEFVRTLNGHKRGIACLQYRDRLVVSGSSDNTIRLW 203

Query: 77  DGPSVGPRGIYNGHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSP-------VI 129
           D        +  GHE+ V  + F     +   S   D  + +WD      P        +
Sbjct: 204 DIECGACLRVLEGHEELVRCIRFDN---KRIVSGAYDGKIKVWDLVAALDPRAPAGTLCL 260

Query: 130 KVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFD 165
           +    H   +  + +   D+  I++ S D+++ ++D
Sbjct: 261 RTLVEHSGRVFRLQF---DEFQIVSSSHDDTILIWD 293

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} Length = 371

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 49.1 bits (115), Expect = 2e-07
 Identities = 11/84 (13%), Positives = 31/84 (36%), Gaps = 2/84 (2%)

Query: 85  GIYNGHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDW 144
             ++   + +    +      +     ++  + +++        +   K H+  +  VDW
Sbjct: 1   AYHSFLVEPISCHAWNKDR-TQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDW 59

Query: 145 NPLDDNLILTGSADNSVRMFDRRN 168
            P D N I+T   D +  ++  + 
Sbjct: 60  AP-DSNRIVTCGTDRNAYVWTLKG 82

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} Length = 371

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 43.3 bits (100), Expect = 2e-05
 Identities = 15/129 (11%), Positives = 36/129 (27%), Gaps = 13/129 (10%)

Query: 99  FCPSSAQEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSAD 158
               +     + G D   +L+        +    +                      +A 
Sbjct: 249 VTFITESSLVAAGHDCFPVLFTYDSAAGKLSFGGRLDVPKQS----------SQRGLTAR 298

Query: 159 NSVRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWSPD---KSSVFGSSAEDGLLNIWDY 215
              +  D++  +     +       H  +V  +        K S F ++  DG ++IWD 
Sbjct: 299 ERFQNLDKKASSEGSAAAGAGLDSLHKNSVSQISVLSGGKAKCSQFCTTGMDGGMSIWDV 358

Query: 216 EKVGKKVEQ 224
             +   ++ 
Sbjct: 359 RSLESALKD 367

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} Length = 371

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 37.1 bits (84), Expect = 0.002
 Identities = 21/120 (17%), Positives = 47/120 (39%), Gaps = 4/120 (3%)

Query: 7   HQDNAEFALAMCPTEPYVLSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSP 66
             +          TE  +++ G D   VL++        +          SS   +    
Sbjct: 240 ASETLPLLAVTFITESSLVAAGHDCFPVLFTYDSAAGKLSFGGRLDVPKQSSQRGLTARE 299

Query: 67  KPGDGNDKA-ADGPSVGPRGIYNGHEDTVEDVTFCP---SSAQEFCSVGDDSCLILWDAR 122
           +  + + KA ++G +    G+ + H+++V  ++      +   +FC+ G D  + +WD R
Sbjct: 300 RFQNLDKKASSEGSAAAGAGLDSLHKNSVSQISVLSGGKAKCSQFCTTGMDGGMSIWDVR 359

>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 325

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 48.8 bits (114), Expect = 3e-07
 Identities = 25/130 (19%), Positives = 45/130 (34%), Gaps = 8/130 (6%)

Query: 87  YNGHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNP 146
           ++     V DV F P S +   +VG D  +  +D + G       +            + 
Sbjct: 201 HHKQGSFVRDVEFSPDSGEFVITVGSDRKISCFDGKSGEFLKYIEDDQEPVQGGIFALSW 260

Query: 147 LDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWS--PDKSSVFGSS 204
           LD     T  AD ++R++D            + K+      +   Q       +    S 
Sbjct: 261 LDSQKFATVGADATIRVWDVTT------SKCVQKWTLDKQQLGNQQVGVVATGNGRIISL 314

Query: 205 AEDGLLNIWD 214
           + DG LN ++
Sbjct: 315 SLDGTLNFYE 324

>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 325

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 41.4 bits (95), Expect = 6e-05
 Identities = 11/108 (10%), Positives = 37/108 (34%), Gaps = 4/108 (3%)

Query: 93  TVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPVIKVEKAHDAD-LHCVDWNPLDD-N 150
               +++ P++       G  + +   D      P +     H +  +  V ++P+    
Sbjct: 19  FTTHLSYDPTTNAIAYPCGKSAFVRCLDDGDSKVPPVVQFTGHGSSVVTTVKFSPIKGSQ 78

Query: 151 LILTGSADNSVRMFDRRNLTSNGV--GSPINKFEGHSAAVLCVQWSPD 196
            + +G     V ++       +     +  ++F+  +  +  + W  +
Sbjct: 79  YLCSGDESGKVIVWGWTFDKESNSVEVNVKSEFQVLAGPISDISWDFE 126

>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 325

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 39.1 bits (89), Expect = 4e-04
 Identities = 21/121 (17%), Positives = 41/121 (33%), Gaps = 13/121 (10%)

Query: 141 CVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGH-SAAVLCVQWSPDKSS 199
            + ++P  + +         VR  D      +    P+ +F GH S+ V  V++SP K S
Sbjct: 22  HLSYDPTTNAIAYPCGKSAFVRCLD----DGDSKVPPVVQFTGHGSSVVTTVKFSPIKGS 77

Query: 200 VF-GSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKVVDFHWNASDPWT 258
            +  S  E G + +W              + +    +  +       + D  W+      
Sbjct: 78  QYLCSGDESGKVIVWG-------WTFDKESNSVEVNVKSEFQVLAGPISDISWDFEGRRL 130

Query: 259 V 259
            
Sbjct: 131 C 131

>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 393

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Antiviral protein Ski8 (Ski8p)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 48.3 bits (113), Expect = 5e-07
 Identities = 16/145 (11%), Positives = 43/145 (29%), Gaps = 10/145 (6%)

Query: 127 PVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGHS- 185
                 KAHDAD+  V       +  ++ S D  ++++D + L +            H  
Sbjct: 5   ATANAGKAHDADIFSVSACN---SFTVSCSGDGYLKVWDNKLLDNENPKDKSYSHFVHKS 61

Query: 186 -----AAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHA 240
                  +  ++    +  +  +++  G L  +   +  +  +      +       +H 
Sbjct: 62  GLHHVDVLQAIERDAFELCLVATTSFSGDLLFYRITREDETKKVIFEKLDLLDSDMKKH- 120

Query: 241 GHRDKVVDFHWNASDPWTVVSVSDD 265
                      +      +V+    
Sbjct: 121 SFWALKWGASNDRLLSHRLVATDVK 145

>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 393

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Antiviral protein Ski8 (Ski8p)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 43.7 bits (101), Expect = 2e-05
 Identities = 16/289 (5%), Positives = 53/289 (18%), Gaps = 57/289 (19%)

Query: 3   ILTGHQDNAEFALAMCPTEPYVLSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSII 62
               H  +     ++     + +S   D  + +W           D     +        
Sbjct: 9   AGKAHDADI---FSVSACNSFTVSCSGDGYLKVW-----------DNKLLDNENPKDKSY 54

Query: 63  KQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDAR 122
                    +                 H D ++ +           +      L+ +   
Sbjct: 55  SHFVHKSGLH-----------------HVDVLQAIERDAFELCLVATTSFSGDLLFYRIT 97

Query: 123 VGTSPV--------IKVEKAHDADLHCVDWNPLDD----NLILTGSADNSVRMFDRRNLT 170
                         +            + W   +D    + ++      +  ++      
Sbjct: 98  REDETKKVIFEKLDLLDSDMKKHSFWALKWGASNDRLLSHRLVATDVKGTTYIWKFHPFA 157

Query: 171 SNG------------VGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKV 218
                          +   +      S     V  S       G +  +G + I +   +
Sbjct: 158 DESNSLTLNWSPTLELQGTVESPMTPSQFATSVDISERGLIATGFN--NGTVQISELSTL 215

Query: 219 GKKVEQGPRTTNYPAGLFFQHAGHRDKVVDFHWNASDPWTVVSVSDDCD 267
                   + +        +      +                   + +
Sbjct: 216 RPLYNFESQHSMINNSNSIRSVKFSPQGSLLAIAHDSNSFGCITLYETE 264

>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 393

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Antiviral protein Ski8 (Ski8p)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 37.9 bits (86), Expect = 0.001
 Identities = 15/115 (13%), Positives = 33/115 (28%), Gaps = 7/115 (6%)

Query: 114 SCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNG 173
             +        +S     E AH + +  + +N      + +   D  +R +D +      
Sbjct: 267 ERIGSLSVPTHSSQASLGEFAHSSWVMSLSFND-SGETLCSAGWDGKLRFWDVKT----- 320

Query: 174 VGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRT 228
               I     H   +   +          S AE G+ ++   +K  +        
Sbjct: 321 -KERITTLNMHCDDIEIEEDILAVDEHGDSLAEPGVFDVKFLKKGWRSGMGADLN 374

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 355

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 48.0 bits (112), Expect = 6e-07
 Identities = 15/70 (21%), Positives = 33/70 (47%), Gaps = 9/70 (12%)

Query: 135 HDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWS 194
             + + C+ +   +DN ++TG+ D  +R++D  N         + +  GH   V  ++++
Sbjct: 12  MTSVITCLQF---EDNYVITGADDKMIRVYDSIN------KKFLLQLSGHDGGVWALKYA 62

Query: 195 PDKSSVFGSS 204
                V GS+
Sbjct: 63  HGGILVSGST 72

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 355

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 43.0 bits (99), Expect = 3e-05
 Identities = 13/82 (15%), Positives = 30/82 (36%), Gaps = 8/82 (9%)

Query: 135 HDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPI-NKFEGHSAAVLCVQW 193
           H  +L  +    + DN++++GS +N   +++ R+      G  +       +  +  V +
Sbjct: 280 HHTNLSAITTFYVSDNILVSGS-ENQFNIYNLRS------GKLVHANILKDADQIWSVNF 332

Query: 194 SPDKSSVFGSSAEDGLLNIWDY 215
                           L I D+
Sbjct: 333 KGKTLVAAVEKDGQSFLEILDF 354

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 355

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 36.8 bits (83), Expect = 0.002
 Identities = 11/77 (14%), Positives = 25/77 (32%), Gaps = 4/77 (5%)

Query: 87  YNGHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNP 146
           ++ H   +  +T    S     S G ++   +++ R G   V          +  V++  
Sbjct: 277 FSYHHTNLSAITTFYVSDNILVS-GSENQFNIYNLRSGK-LVHANILKDADQIWSVNFKG 334

Query: 147 LDDNLILTGSADNSVRM 163
               L+     D    +
Sbjct: 335 --KTLVAAVEKDGQSFL 349

>d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]} Length = 432

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Paracoccus denitrificans [TaxId: 266]

 Score = 47.9 bits (113), Expect = 7e-07
 Identities = 29/188 (15%), Positives = 50/188 (26%), Gaps = 16/188 (8%)

Query: 107 FCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDR 166
             ++ D   + L D       +  V     A +H    +      +     D  V M D 
Sbjct: 35  SVTLRDAGQIALIDGSTYE--IKTVLDTGYA-VHISRLSA-SGRYLFVIGRDGKVNMIDL 90

Query: 167 RNLTSNGVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGP 226
                  V   I       +         +       +       I D E +  K  Q  
Sbjct: 91  WMKEPTTVAE-IKIGSEARSIETSKMEGWEDKYAIAGAYWPPQYVIMDGETLEPKKIQST 149

Query: 227 RTTNYPAGLFFQHAGHRDKVVDFHWNASDPWTVVSVSDDCDSTGGGGTLQIWRMSDLIYR 286
           R   Y     +        ++  H     P  +V+V +        G + +   +DL   
Sbjct: 150 RGMTYDEQ-EYHPEPRVAAILASH---YRPEFIVNVKET-------GKILLVDYTDLNNL 198

Query: 287 PQDEVLAE 294
              E+ AE
Sbjct: 199 KTTEISAE 206

>d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]} Length = 432

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Paracoccus denitrificans [TaxId: 266]

 Score = 37.5 bits (86), Expect = 0.002
 Identities = 26/201 (12%), Positives = 44/201 (21%), Gaps = 17/201 (8%)

Query: 94  VEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPV---IKVEKAHDADLHCVDWNPLDDN 150
           V       S    F   G D  + + D  +        IK+     +          D  
Sbjct: 64  VHISRLSASGRYLFVI-GRDGKVNMIDLWMKEPTTVAEIKIGSEARSIETSKMEGWEDKY 122

Query: 151 LILTGSADNSVRMFDRRNLTSNGVGSPIN-----KFEGHSAAVLCVQWSPDKSSVFGSSA 205
            I          + D   L    + S        +       V  +  S  +     +  
Sbjct: 123 AIAGAYWPPQYVIMDGETLEPKKIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFIVNVK 182

Query: 206 EDGLLNIWDYEKVGKKVEQGPRTTNYPAGL--------FFQHAGHRDKVVDFHWNASDPW 257
           E G + + DY  +            +            F   A  R+K+V          
Sbjct: 183 ETGKILLVDYTDLNNLKTTEISAERFLHDGGLDGSHRYFITAANARNKLVVIDTKEGKLV 242

Query: 258 TVVSVSDDCDSTGGGGTLQIW 278
            +          G G      
Sbjct: 243 AIEDTGGQTPHPGRGANFVHP 263

>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 287

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 46.9 bits (109), Expect = 1e-06
 Identities = 14/80 (17%), Positives = 28/80 (35%), Gaps = 7/80 (8%)

Query: 135 HDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWS 194
                   +   ++++L+ TGS D ++ ++  +          I     H   V  + W 
Sbjct: 213 WKPAEKGANEEEIEEDLVATGSLDTNIFIYSVKR-----PMKIIKALNAHKDGVNNLLWE 267

Query: 195 PDKSSVFGSSAEDGLLNIWD 214
               S   SS  D  +  W+
Sbjct: 268 TP--STLVSSGADACIKRWN 285

>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 287

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 44.6 bits (103), Expect = 6e-06
 Identities = 8/69 (11%), Positives = 25/69 (36%), Gaps = 3/69 (4%)

Query: 97  VTFCPSSAQEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGS 156
                       +   D+ + ++  +      IK   AH   ++ + W     + +++  
Sbjct: 220 ANEEEIEEDLVATGSLDTNIFIYSVKRPMKI-IKALNAHKDGVNNLLWET--PSTLVSSG 276

Query: 157 ADNSVRMFD 165
           AD  ++ ++
Sbjct: 277 ADACIKRWN 285

>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 287

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 39.9 bits (91), Expect = 2e-04
 Identities = 13/79 (16%), Positives = 27/79 (34%), Gaps = 16/79 (20%)

Query: 124 GTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEG 183
           G   V+K    H+  +  +  NPL     ++GS D  +  +              +  + 
Sbjct: 1   GHDEVLKTISGHNKGITALTVNPL-----ISGSYDGRIMEWSSS-----------SMHQD 44

Query: 184 HSAAVLCVQWSPDKSSVFG 202
           HS  ++ +  S  +     
Sbjct: 45  HSNLIVSLDNSKAQEYSSI 63

>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 287

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 36.1 bits (81), Expect = 0.004
 Identities = 8/48 (16%), Positives = 17/48 (35%), Gaps = 5/48 (10%)

Query: 173 GVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGK 220
           G    +    GH+  +  +  +P       S + DG +  W    + +
Sbjct: 1   GHDEVLKTISGHNKGITALTVNP-----LISGSYDGRIMEWSSSSMHQ 43

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 47.1 bits (110), Expect = 1e-06
 Identities = 24/132 (18%), Positives = 42/132 (31%), Gaps = 10/132 (7%)

Query: 122 RVGTSPVIKVEKAH-DADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINK 180
           R G     KV K H D  + C+ +     N I++GS DN+++++          G  +  
Sbjct: 2   RRGELKSPKVLKGHDDHVITCLQF---CGNRIVSGSDDNTLKVWSAVT------GKCLRT 52

Query: 181 FEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHA 240
             GH+  V   Q   +      +     + N    E +                     +
Sbjct: 53  LVGHTGGVWSSQMRDNIIISGSTDRTLKVWNAETGECIHTLYGHTSTVRCMHLHEKRVVS 112

Query: 241 GHRDKVVDFHWN 252
           G RD  +     
Sbjct: 113 GSRDATLRVWDI 124

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 46.3 bits (108), Expect = 2e-06
 Identities = 27/156 (17%), Positives = 54/156 (34%), Gaps = 19/156 (12%)

Query: 70  DGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPVI 129
           D + +  D  +        GH+     +    +      S   DS + +WD +  T   +
Sbjct: 196 DTSIRVWDVETGNCIHTLTGHQSLTSGMELKDN---ILVSGNADSTVKIWDIK--TGQCL 250

Query: 130 KVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKF-----EGH 184
           +  +  +     V     + N ++T S D +V+++D +       G  I         G 
Sbjct: 251 QTLQGPNKHQSAVTCLQFNKNFVITSSDDGTVKLWDLKT------GEFIRNLVTLESGGS 304

Query: 185 SAAVLCVQWSPDKSSVFGSSA---EDGLLNIWDYEK 217
              V  ++ S  K      S    E+  L + D++ 
Sbjct: 305 GGVVWRIRASNTKLVCAVGSRNGTEETKLLVLDFDV 340

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.3 bits (100), Expect = 2e-05
 Identities = 38/214 (17%), Positives = 73/214 (34%), Gaps = 19/214 (8%)

Query: 3   ILTGHQDNAEFALAMCPTEPYVLSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSII 62
           +L GH D+    L  C     ++SG  D ++ +WS     T          + G   S +
Sbjct: 11  VLKGHDDHVITCLQFCGN--RIVSGSDDNTLKVWSAV---TGKCLRTLVGHTGGVWSSQM 65

Query: 63  KQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDAR 122
           + +       D+     +       +        V       +   S   D+ L +WD  
Sbjct: 66  RDNIIISGSTDRTLKVWNAETGECIHTLYGHTSTVRCMHLHEKRVVSGSRDATLRVWDIE 125

Query: 123 VGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFE 182
            G     +        +  V     D   +++G+ D  V+++D    T       ++  +
Sbjct: 126 TG-----QCLHVLMGHVAAVRCVQYDGRRVVSGAYDFMVKVWDPETET------CLHTLQ 174

Query: 183 GHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYE 216
           GH+  V  +Q+         S + D  + +WD E
Sbjct: 175 GHTNRVYSLQFDG---IHVVSGSLDTSIRVWDVE 205

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.0 bits (94), Expect = 1e-04
 Identities = 26/164 (15%), Positives = 50/164 (30%), Gaps = 11/164 (6%)

Query: 4   LTGHQDNAEFALAMCPTEPYVLSGGKDKSVVLWSIQDH--ITSSATDPATAKSAGSSGSI 61
           L GH +       +     +V+SG  D S+ +W ++    I +     +         +I
Sbjct: 173 LQGHTNRVYS---LQFDGIHVVSGSLDTSIRVWDVETGNCIHTLTGHQSLTSGMELKDNI 229

Query: 62  IKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDA 121
           +       D   K  D  +        G       VT    +     +  DD  + LWD 
Sbjct: 230 LVSGN--ADSTVKIWDIKTGQCLQTLQGPNKHQSAVTCLQFNKNFVITSSDDGTVKLWDL 287

Query: 122 RVGT---SPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVR 162
           + G    + V          +  +  +     +   GS + +  
Sbjct: 288 KTGEFIRNLVTLESGGSGGVVWRIRASN-TKLVCAVGSRNGTEE 330

>d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]} Length = 426

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Pseudomonas aeruginosa [TaxId: 287]

 Score = 44.6 bits (104), Expect = 9e-06
 Identities = 20/151 (13%), Positives = 37/151 (24%), Gaps = 6/151 (3%)

Query: 109 SVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRN 168
           ++ D   + L D       ++KV     A +H    +      +L    D  + M D   
Sbjct: 37  TLRDAGQIALVDGDSKK--IVKVIDTGYA-VHISRMSA-SGRYLLVIGRDARIDMIDLWA 92

Query: 169 LTSNGVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRT 228
                V   I       +         +       +       I D E +  K     R 
Sbjct: 93  KEPTKVA-EIKIGIEARSVESSKFKGYEDRYTIAGAYWPPQFAIMDGETLEPKQIVSTRG 151

Query: 229 TNYPAGLFFQHAGHRDKVVDFHWNASDPWTV 259
                   +        ++  H +      V
Sbjct: 152 MTVD-TQTYHPEPRVAAIIASHEHPEFIVNV 181

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 311

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 43.7 bits (101), Expect = 1e-05
 Identities = 10/83 (12%), Positives = 26/83 (31%), Gaps = 8/83 (9%)

Query: 135 HDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGHS-AAVLCVQW 193
             +          D   I + SAD ++++++                   +      +  
Sbjct: 236 AHSGSVFGLTWSPDGTKIASASADKTIKIWNVAT------LKVEKTIPVGTRIEDQQLGI 289

Query: 194 SPDKSSVFGSSAEDGLLNIWDYE 216
              K ++  S + +G +N  + E
Sbjct: 290 IWTKQALV-SISANGFINFVNPE 311

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 311

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 40.7 bits (93), Expect = 1e-04
 Identities = 34/279 (12%), Positives = 65/279 (23%), Gaps = 26/279 (9%)

Query: 3   ILTGHQDNAEFALAMCPTEPYVLSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSG--- 59
           I T H           P+  Y  SG    +V +W          T               
Sbjct: 53  IYTEHSHQT-TVAKTSPSGYYCASGDVHGNVRIWDTTQTTHILKTTIPVFSGPVKDISWD 111

Query: 60  SIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQEFCSVGDDSCLILW 119
           S  K+    G+G ++                      +            +   S     
Sbjct: 112 SESKRIAAVGEGRERFGHVFLFDTGTSNGNLTGQARAMNSVDFKPSRPFRIISGSDDNTV 171

Query: 120 DARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPIN 179
               G     K                 D +L  +   D ++ +++  + T  GV    +
Sbjct: 172 AIFEGPPFKFKSTFGEHTKFVHSVRYNPDGSLFASTGGDGTIVLYNGVDGTKTGVFEDDS 231

Query: 180 KFEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQH 239
                 +  +         +   S++ D  + IW+              T          
Sbjct: 232 LKNVAHSGSVFGLTWSPDGTKIASASADKTIKIWNVA------------TLKVEKTIPVG 279

Query: 240 AGHRDKVVDFHWNASDPWTVVSVSDDCDSTGGGGTLQIW 278
               D+ +   W       +VS+S +       G +   
Sbjct: 280 TRIEDQQLGIIW---TKQALVSISAN-------GFINFV 308

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 311

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 37.2 bits (84), Expect = 0.002
 Identities = 14/118 (11%), Positives = 28/118 (23%), Gaps = 9/118 (7%)

Query: 140 HCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWSPDKSS 199
             +   P   + I   +   SV      +       +    +  HS      + SP    
Sbjct: 21  VVLGNTP-AGDKIQYCN-GTSVYTVPVGS------LTDTEIYTEHSHQTTVAKTSPSGYY 72

Query: 200 VFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKVVDFHWNASDPW 257
              S    G + IWD  +    ++      + P       +  +              
Sbjct: 73  CA-SGDVHGNVRIWDTTQTTHILKTTIPVFSGPVKDISWDSESKRIAAVGEGRERFGH 129

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 299

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 41.1 bits (94), Expect = 9e-05
 Identities = 16/130 (12%), Positives = 39/130 (30%), Gaps = 6/130 (4%)

Query: 128 VIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGHSAA 187
           + +V   H+  +  +  +  D   + +  A+  +  +D     SN V       + H+  
Sbjct: 4   IDQVRYGHNKAITALSSSA-DGKTLFSADAEGHINSWDISTGISNRV-----FPDVHATM 57

Query: 188 VLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKVV 247
           +  ++ +        S  +   +       V        + ++ P GL     G      
Sbjct: 58  ITGIKTTSKGDLFTVSWDDHLKVVPAGGSGVDSSKAVANKLSSQPLGLAVSADGDIAVAA 117

Query: 248 DFHWNASDPW 257
            +   A    
Sbjct: 118 CYKHIAIYSH 127

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 299

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 40.7 bits (93), Expect = 1e-04
 Identities = 8/67 (11%), Positives = 26/67 (38%), Gaps = 1/67 (1%)

Query: 99  FCPSSAQEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSAD 158
                     +   D+ +I+W+    +   I ++ AH            ++  I++   D
Sbjct: 231 SWSPDNVRLATGSLDNSVIVWNMNKPSDHPIIIKGAHAMSSVNSVIWL-NETTIVSAGQD 289

Query: 159 NSVRMFD 165
           ++++ ++
Sbjct: 290 SNIKFWN 296

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 299

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 37.7 bits (85), Expect = 0.001
 Identities = 17/116 (14%), Positives = 36/116 (31%), Gaps = 5/116 (4%)

Query: 99  FCPSSAQEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSAD 158
              ++     +      +I +                            D+  + TGS D
Sbjct: 186 AFSNNGAFLVATDQSRKVIPYSVANNFELAHTNSWTFHTAKVACVSWSPDNVRLATGSLD 245

Query: 159 NSVRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWD 214
           NSV +++    + + +   I K     ++V  V W  + + V      D  +  W+
Sbjct: 246 NSVIVWNMNKPSDHPI---IIKGAHAMSSVNSVIWLNETTIVSAGQ--DSNIKFWN 296

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 299

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 37.7 bits (85), Expect = 0.001
 Identities = 13/44 (29%), Positives = 22/44 (50%), Gaps = 1/44 (2%)

Query: 174 VGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEK 217
           +GS      GH+ A+  +  S D  ++F S+  +G +N WD   
Sbjct: 1   LGSIDQVRYGHNKAITALSSSADGKTLF-SADAEGHINSWDIST 43

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 299

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 36.5 bits (82), Expect = 0.002
 Identities = 7/61 (11%), Positives = 16/61 (26%), Gaps = 2/61 (3%)

Query: 86  IYNGHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWN 145
           +  GH   +  ++      +   S   +  +  WD   G          H   +  +   
Sbjct: 7   VRYGHNKAITALSSSADG-KTLFSADAEGHINSWDISTGI-SNRVFPDVHATMITGIKTT 64

Query: 146 P 146
            
Sbjct: 65  S 65

>d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} Length = 360

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Tricorn protease domain 2
family: Tricorn protease domain 2
domain: Tricorn protease domain 2
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

 Score = 40.6 bits (93), Expect = 1e-04
 Identities = 13/164 (7%), Positives = 30/164 (18%), Gaps = 22/164 (13%)

Query: 17  MCPTEPYVLSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKP-------- 68
                  +                   S              GS       P        
Sbjct: 186 FDADSKNLYYLSYRSLDPSPDRVVLNFSFEVVSKPFVIPLIPGSPNPTKLVPRSMTSEAG 245

Query: 69  -----GDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSS--AQEFCSVGDDSCLILWDA 121
                      +      G   +    E ++   +       A  +    +   L+ +D 
Sbjct: 246 EYDLNDMYKRSSPINVDPGDYRMIIPLESSILIYSVPVHGEFAAYYQGAPEKGVLLKYDV 305

Query: 122 RVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFD 165
           +               +L  +  +  D   ++    D  +  F 
Sbjct: 306 KTRK------VTEVKNNLTDLRLSA-DRKTVMVRKDDGKIYTFP 342

>d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} Length = 360

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Tricorn protease domain 2
family: Tricorn protease domain 2
domain: Tricorn protease domain 2
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

 Score = 39.8 bits (91), Expect = 3e-04
 Identities = 14/133 (10%), Positives = 31/133 (23%), Gaps = 16/133 (12%)

Query: 89  GHEDTVEDVTFCPSSAQ----EFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDW 144
               +       P S      E+            +   G   +I   ++          
Sbjct: 225 LIPGSPNPTKLVPRSMTSEAGEYDLNDMYKRSSPINVDPGDYRMIIPLESSILIYSVPVH 284

Query: 145 NPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWSPDKSSVFGSS 204
                           +  +D +            K       +  ++ S D+ +V    
Sbjct: 285 GE-FAAYYQGAPEKGVLLKYDVKT----------RKVTEVKNNLTDLRLSADRKTVM-VR 332

Query: 205 AEDGLLNIWDYEK 217
            +DG +  +  EK
Sbjct: 333 KDDGKIYTFPLEK 345

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	309
d1vyhc1	317	Platelet-activating factor acetylhydrolase IB subu	100.0
d1nr0a1	311	Actin interacting protein 1 {Nematode (Caenorhabdi	100.0
d1k8kc_	371	Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taur	100.0
d1tbga_	340	beta1-subunit of the signal-transducing G protein	100.0
d1gxra_	337	Groucho/tle1, C-terminal domain {Human (Homo sapie	100.0
d1nr0a1	311	Actin interacting protein 1 {Nematode (Caenorhabdi	100.0
d1erja_	388	Tup1, C-terminal domain {Baker's yeast (Saccharomy	100.0
d1gxra_	337	Groucho/tle1, C-terminal domain {Human (Homo sapie	100.0
d1pgua1	325	Actin interacting protein 1 {Baker's yeast (Saccha	100.0
d1nr0a2	299	Actin interacting protein 1 {Nematode (Caenorhabdi	100.0
d1k8kc_	371	Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taur	100.0
d1vyhc1	317	Platelet-activating factor acetylhydrolase IB subu	100.0
d1tbga_	340	beta1-subunit of the signal-transducing G protein	100.0
d1sq9a_	393	Antiviral protein Ski8 (Ski8p) {Baker's yeast (Sac	100.0
d1nexb2	355	Cdc4 propeller domain {Baker's yeast (Saccharomyce	100.0
d1erja_	388	Tup1, C-terminal domain {Baker's yeast (Saccharomy	100.0
d2ovrb2	342	F-box/WD repeat-containing protein 7, FBXW7 {Human	100.0
d1yfqa_	342	Cell cycle arrest protein BUB3 {Baker's yeast (Sac	100.0
d1pgua2	287	Actin interacting protein 1 {Baker's yeast (Saccha	100.0
d1pgua1	325	Actin interacting protein 1 {Baker's yeast (Saccha	99.97
d1nr0a2	299	Actin interacting protein 1 {Nematode (Caenorhabdi	99.97
d1p22a2	293	F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Hom	99.97
d1nexb2	355	Cdc4 propeller domain {Baker's yeast (Saccharomyce	99.97
d1p22a2	293	F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Hom	99.97
d2ovrb2	342	F-box/WD repeat-containing protein 7, FBXW7 {Human	99.97
d1sq9a_	393	Antiviral protein Ski8 (Ski8p) {Baker's yeast (Sac	99.95
d1k32a3	360	Tricorn protease domain 2 {Archaeon Thermoplasma a	99.94
d1pgua2	287	Actin interacting protein 1 {Baker's yeast (Saccha	99.93
d1k32a3	360	Tricorn protease domain 2 {Archaeon Thermoplasma a	99.93
d1yfqa_	342	Cell cycle arrest protein BUB3 {Baker's yeast (Sac	99.92
d1hzua2	426	C-terminal (heme d1) domain of cytochrome cd1-nitr	99.9
d1l0qa2	301	Surface layer protein {Archaeon Methanosarcina maz	99.9
d1qksa2	432	C-terminal (heme d1) domain of cytochrome cd1-nitr	99.89
d1hzua2	426	C-terminal (heme d1) domain of cytochrome cd1-nitr	99.86
d1qksa2	432	C-terminal (heme d1) domain of cytochrome cd1-nitr	99.86
d1jmxb_	346	Quinohemoprotein amine dehydrogenase B chain {Pseu	99.83
d1l0qa2	301	Surface layer protein {Archaeon Methanosarcina maz	99.83
d1ri6a_	333	Putative isomerase YbhE {Escherichia coli [TaxId:	99.82
d1pbyb_	337	Quinohemoprotein amine dehydrogenase B chain {Para	99.81
d1pbyb_	337	Quinohemoprotein amine dehydrogenase B chain {Para	99.79
d2madh_	373	Methylamine dehydrogenase, H-chain {Gram negative	99.77
d2bbkh_	355	Methylamine dehydrogenase, H-chain {Paracoccus den	99.74
d1ri6a_	333	Putative isomerase YbhE {Escherichia coli [TaxId:	99.72
d2madh_	373	Methylamine dehydrogenase, H-chain {Gram negative	99.6
d1jmxb_	346	Quinohemoprotein amine dehydrogenase B chain {Pseu	99.58
d2hqsa1	269	TolB, C-terminal domain {Escherichia coli [TaxId:	99.53
d1mdah_	368	Methylamine dehydrogenase, H-chain {Paracoccus den	99.53
d2bbkh_	355	Methylamine dehydrogenase, H-chain {Paracoccus den	99.5
d1qnia2	441	Nitrous oxide reductase, N-terminal domain {Pseudo	99.44
d2bgra1	470	Dipeptidyl peptidase IV/CD26, N-terminal domain {P	99.44
d1jofa_	365	3-carboxy-cis,cis-mucoante lactonizing enzyme {Neu	99.41
d2bgra1	470	Dipeptidyl peptidase IV/CD26, N-terminal domain {P	99.36
d1qnia2	441	Nitrous oxide reductase, N-terminal domain {Pseudo	99.35
d2p4oa1	302	Hypothetical protein All0351 homologue {Nostoc pun	99.31
d1q7fa_	279	Brain tumor cg10719-pa {Fruit fly (Drosophila mela	99.25
d1mdah_	368	Methylamine dehydrogenase, H-chain {Paracoccus den	99.21
d2dg1a1	319	Lactonase Drp35 {Staphylococcus aureus [TaxId: 128	99.2
d1rwia_	260	Serine/threonine-protein kinase PknD {Mycobacteriu	99.15
d1jofa_	365	3-carboxy-cis,cis-mucoante lactonizing enzyme {Neu	99.13
d1rwia_	260	Serine/threonine-protein kinase PknD {Mycobacteriu	99.1
d1pjxa_	314	Diisopropylfluorophosphatase (phosphotriesterase,	99.06
d1pjxa_	314	Diisopropylfluorophosphatase (phosphotriesterase,	99.06
d2p4oa1	302	Hypothetical protein All0351 homologue {Nostoc pun	98.87
d2ghsa1	295	Regucalcin {Agrobacterium tumefaciens [TaxId: 358]	98.81
d1xfda1	465	Dipeptidyl aminopeptidase-like protein 6, DPP6, N-	98.76
d2hqsa1	269	TolB, C-terminal domain {Escherichia coli [TaxId:	98.71
d1q7fa_	279	Brain tumor cg10719-pa {Fruit fly (Drosophila mela	98.64
d2dg1a1	319	Lactonase Drp35 {Staphylococcus aureus [TaxId: 128	98.56
d2ghsa1	295	Regucalcin {Agrobacterium tumefaciens [TaxId: 358]	98.44
d1xfda1	465	Dipeptidyl aminopeptidase-like protein 6, DPP6, N-	98.44
d1npea_	263	Nidogen {Mouse (Mus musculus) [TaxId: 10090]}	98.08
d1npea_	263	Nidogen {Mouse (Mus musculus) [TaxId: 10090]}	98.01
d1fwxa2	459	Nitrous oxide reductase, N-terminal domain {Paraco	98.0
d1k32a2	281	Tricorn protease N-terminal domain {Archaeon Therm	98.0
d1ijqa1	266	Low density lipoprotein (LDL) receptor {Human (Hom	97.8
d1fwxa2	459	Nitrous oxide reductase, N-terminal domain {Paraco	97.74
d1k32a2	281	Tricorn protease N-terminal domain {Archaeon Therm	97.52
d1ijqa1	266	Low density lipoprotein (LDL) receptor {Human (Hom	97.24
d1v04a_	340	Serum paraoxonase/arylesterase 1, PON1 {Rabit (Ory	96.92
d1qfma1	430	Prolyl oligopeptidase, N-terminal domain {Pig (Sus	96.76
d1k3ia3	387	Galactose oxidase, central domain {Fungi (Fusarium	96.45
d1utca2	327	Clathrin heavy-chain terminal domain {Rat (Rattus	95.89
d2ad6a1	571	Methanol dehydrogenase, heavy chain {Methylophilus	95.79
d1kb0a2	573	Quinoprotein alcohol dehydrogenase, N-terminal dom	95.67
d1utca2	327	Clathrin heavy-chain terminal domain {Rat (Rattus	95.55
d1flga_	582	Ethanol dehydrogenase {Pseudomonas aeruginosa [Tax	95.55
d1h6la_	353	Thermostable phytase (3-phytase) {Bacillus amyloli	94.92
d1kv9a2	560	Quinoprotein alcohol dehydrogenase, N-terminal dom	94.88
d1v04a_	340	Serum paraoxonase/arylesterase 1, PON1 {Rabit (Ory	94.84
d1xipa_	381	Nucleoporin NUP159 {Baker's yeast (Saccharomyces c	94.62
d1xipa_	381	Nucleoporin NUP159 {Baker's yeast (Saccharomyces c	93.79
d1kb0a2	573	Quinoprotein alcohol dehydrogenase, N-terminal dom	93.7
d2ad6a1	571	Methanol dehydrogenase, heavy chain {Methylophilus	93.37
d1kv9a2	560	Quinoprotein alcohol dehydrogenase, N-terminal dom	93.34
d2hu7a1	313	Acylamino-acid-releasing enzyme, N-terminal donain	93.25
d1k3ia3	387	Galactose oxidase, central domain {Fungi (Fusarium	93.15
d1crua_	450	Soluble quinoprotein glucose dehydrogenase {Acinet	92.58
d1qfma1	430	Prolyl oligopeptidase, N-terminal domain {Pig (Sus	92.56
d1flga_	582	Ethanol dehydrogenase {Pseudomonas aeruginosa [Tax	92.26
d1w6sa_	596	Methanol dehydrogenase, heavy chain {Methylobacter	90.91
d2ebsa1	427	Oligoxyloglucan reducing end-specific cellobiohydr	90.57
d1crua_	450	Soluble quinoprotein glucose dehydrogenase {Acinet	89.53
d1h6la_	353	Thermostable phytase (3-phytase) {Bacillus amyloli	88.51
d1w6sa_	596	Methanol dehydrogenase, heavy chain {Methylobacter	88.3

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=100.00  E-value=5e-41  Score=264.24  Aligned_cols=266  Identities=20%  Similarity=0.332  Sum_probs=219.2

Q ss_pred             cccCCCCCcceEEEEECCCCCEEEEecCCCcEEEEeCCccccccccCC----ccccccCCCCceeecCCCCCCCCcccCC
Q 021657            2 EILTGHQDNAEFALAMCPTEPYVLSGGKDKSVVLWSIQDHITSSATDP----ATAKSAGSSGSIIKQSPKPGDGNDKAAD   77 (309)
Q Consensus         2 ~~l~~H~~~~V~~~~~~~~~~~l~t~~~dg~i~vwd~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~   77 (309)
                      .+|+||++ +|++|+|+|++++|+||+.||+|+|||++++........    ...........  .+...........++
T Consensus        11 ~~L~GH~~-~I~~l~~sp~~~~l~s~s~Dg~i~iWd~~~~~~~~~~~~h~~~V~~~~~~~~~~--~~~~~~~~~~~~~~~   87 (317)
T d1vyhc1          11 YALSGHRS-PVTRVIFHPVFSVMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDHSGK--LLASCSADMTIKLWD   87 (317)
T ss_dssp             CEEECCSS-CEEEEEECSSSSEEEEEESSSCEEEEETTTCCCCEEECCCSSCEEEEEECTTSS--EEEEEETTSCCCEEE
T ss_pred             EEEcCCCC-CeEEEEEcCCCCEEEEEeCCCeEEEEECCCCCEEEEEeCCCCcEEEEeeecccc--ccccccccccccccc
Confidence            46899999 899999999999999999999999999987744333221    11111111111  112223345556666


Q ss_pred             CCCcCcccccccccCCeEEEEEecCCCcEEEEEcCCCeEEEEEcCCCCcceEEEeeccCCceeEEEeccCCCCeEEEEcC
Q 021657           78 GPSVGPRGIYNGHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSA  157 (309)
Q Consensus        78 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~  157 (309)
                      ....+....+.+|...+.++.|+|++ ..+++++.|+.+++||+++++  ....+..|...+.+++|+| ++.+|++++.
T Consensus        88 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~d~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~-~~~~l~~~~~  163 (317)
T d1vyhc1          88 FQGFECIRTMHGHDHNVSSVSIMPNG-DHIVSASRDKTIKMWEVQTGY--CVKTFTGHREWVRMVRPNQ-DGTLIASCSN  163 (317)
T ss_dssp             TTSSCEEECCCCCSSCEEEEEECSSS-SEEEEEETTSEEEEEETTTCC--EEEEEECCSSCEEEEEECT-TSSEEEEEET
T ss_pred             ccccccccccccccccceeeeccCCC-ceEEeeccCcceeEeecccce--eeeEEccCCCcceeeeccc-CCCEEEEEeC
Confidence            67777777788899999999999998 789999999999999999888  6778889999999999999 9999999999


Q ss_pred             CCcEEEEecCCCCCCCCCCceeeeccCCCCeeEEEEecCCC-------------------cEEEEecCCCcEEEEeCCcc
Q 021657          158 DNSVRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWSPDKS-------------------SVFGSSAEDGLLNIWDYEKV  218 (309)
Q Consensus       158 dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-------------------~l~~~~~~dg~i~iwd~~~~  218 (309)
                      |+.|++|++++      .+.+..+..+...+.+++|+|++.                   .++++++.|+.|++||+++ 
T Consensus       164 d~~v~~~~~~~------~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~-  236 (317)
T d1vyhc1         164 DQTVRVWVVAT------KECKAELREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVST-  236 (317)
T ss_dssp             TSCEEEEETTT------CCEEEEECCCSSCEEEEEECCSCGGGGGGGCCSCC-------CCEEEEEETTSEEEEEETTT-
T ss_pred             CCeEEEEeecc------ceeeEEEecCCCCceEEEEeeccccceeeccccceeeeeccCCceeEeccCCCEEEEEECCC-
Confidence            99999999999      888899999999999999988643                   1467899999999999987 


Q ss_pred             cccccCCCCCcCCCCceeeeecCCCcceeeEEEccCCCeEEEEecCCCCCCCCCCeEEEEEccccccCChhhHhHhhhcc
Q 021657          219 GKKVEQGPRTTNYPAGLFFQHAGHRDKVVDFHWNASDPWTVVSVSDDCDSTGGGGTLQIWRMSDLIYRPQDEVLAELEKF  298 (309)
Q Consensus       219 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~s~d~~s~~~dg~v~vw~~~~~~~~~~~~~~~~~~~h  298 (309)
                                    ..++..+.+|...|.+++|+|++.+++        +|+.||.|++||+.      +++++.++.+|
T Consensus       237 --------------~~~~~~~~~~~~~v~~~~~~~~~~~l~--------s~~~dg~i~iwd~~------~~~~~~~~~~h  288 (317)
T d1vyhc1         237 --------------GMCLMTLVGHDNWVRGVLFHSGGKFIL--------SCADDKTLRVWDYK------NKRCMKTLNAH  288 (317)
T ss_dssp             --------------TEEEEEEECCSSCEEEEEECSSSSCEE--------EEETTTEEEEECCT------TSCCCEEEECC
T ss_pred             --------------CcEEEEEeCCCCCEEEEEECCCCCEEE--------EEECCCeEEEEECC------CCcEEEEEcCC
Confidence                          456777889999999999999887655        44555999999998      67888999999


Q ss_pred             cceEEEeeeCC
Q 021657          299 KAHVISCTSKP  309 (309)
Q Consensus       299 ~~~v~~~~~~P  309 (309)
                      .++|++++|+|
T Consensus       289 ~~~V~~~~~s~  299 (317)
T d1vyhc1         289 EHFVTSLDFHK  299 (317)
T ss_dssp             SSCEEEEEECS
T ss_pred             CCCEEEEEEcC
Confidence            99999999987

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=100.00  E-value=1.1e-39  Score=256.54  Aligned_cols=244  Identities=20%  Similarity=0.301  Sum_probs=189.3

Q ss_pred             cccCCCCCcceEEEEECCCCCEEEEecCCCcEEEEeCCccccccc------cCCccccccCCCCceeecCCCCCCCCccc
Q 021657            2 EILTGHQDNAEFALAMCPTEPYVLSGGKDKSVVLWSIQDHITSSA------TDPATAKSAGSSGSIIKQSPKPGDGNDKA   75 (309)
Q Consensus         2 ~~l~~H~~~~V~~~~~~~~~~~l~t~~~dg~i~vwd~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   75 (309)
                      +.+.+|.+ .|++++|+|+|++|++|+.||+|+|||+.+......      ..........................+.+
T Consensus        52 ~~~~~H~~-~v~~~~~sp~g~~latg~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~d~~~l~~~~~~~~~~~~v  130 (311)
T d1nr0a1          52 EIYTEHSH-QTTVAKTSPSGYYCASGDVHGNVRIWDTTQTTHILKTTIPVFSGPVKDISWDSESKRIAAVGEGRERFGHV  130 (311)
T ss_dssp             EEECCCSS-CEEEEEECTTSSEEEEEETTSEEEEEESSSTTCCEEEEEECSSSCEEEEEECTTSCEEEEEECCSSCSEEE
T ss_pred             EEEcCCCC-CEEEEEEeCCCCeEeccccCceEeeeeeeccccccccccccccCccccccccccccccccccccccccccc
Confidence            56789998 899999999999999999999999999987643211      11112222222333333333334556778


Q ss_pred             CCCCCcCcccccccccCCeEEEEEecCCCcEEEEEcCCCeEEEEEcCCCCcceEEEeeccCCceeEEEeccCCCCeEEEE
Q 021657           76 ADGPSVGPRGIYNGHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTG  155 (309)
Q Consensus        76 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~  155 (309)
                      |+..+.+....+.+|...|++++|+|+++..|++|+.||.|++||+++.+  .......|..+|+++.|+| ++++++++
T Consensus       131 ~~~~~~~~~~~l~~h~~~v~~v~~~~~~~~~l~sgs~d~~i~i~d~~~~~--~~~~~~~~~~~i~~v~~~p-~~~~l~~~  207 (311)
T d1nr0a1         131 FLFDTGTSNGNLTGQARAMNSVDFKPSRPFRIISGSDDNTVAIFEGPPFK--FKSTFGEHTKFVHSVRYNP-DGSLFAST  207 (311)
T ss_dssp             EETTTCCBCBCCCCCSSCEEEEEECSSSSCEEEEEETTSCEEEEETTTBE--EEEEECCCSSCEEEEEECT-TSSEEEEE
T ss_pred             cccccccccccccccccccccccccccceeeecccccccccccccccccc--cccccccccccccccccCc-cccccccc
Confidence            88888888899999999999999999986679999999999999998877  6778889999999999999 99999999


Q ss_pred             cCCCcEEEEecCCCCCCCCCCceeee-------ccCCCCeeEEEEecCCCcEEEEecCCCcEEEEeCCcccccccCCCCC
Q 021657          156 SADNSVRMFDRRNLTSNGVGSPINKF-------EGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRT  228 (309)
Q Consensus       156 ~~dg~i~i~d~~~~~~~~~~~~~~~~-------~~~~~~v~~~~~~~~~~~l~~~~~~dg~i~iwd~~~~~~~~~~~~~~  228 (309)
                      +.|+.|++||+++      +..+..+       .+|...|++++|+|++++ |++|+.||.|+|||+++           
T Consensus       208 ~~d~~v~~~d~~~------~~~~~~~~~~~~~~~~h~~~V~~~~~s~~~~~-l~tgs~Dg~v~iwd~~t-----------  269 (311)
T d1nr0a1         208 GGDGTIVLYNGVD------GTKTGVFEDDSLKNVAHSGSVFGLTWSPDGTK-IASASADKTIKIWNVAT-----------  269 (311)
T ss_dssp             ETTSCEEEEETTT------CCEEEECBCTTSSSCSSSSCEEEEEECTTSSE-EEEEETTSEEEEEETTT-----------
T ss_pred             ccccccccccccc------ccccccccccccccccccccccccccCCCCCE-EEEEeCCCeEEEEECCC-----------
Confidence            9999999999998      5555544       357789999999999996 56999999999999987           


Q ss_pred             cCCCCceeeeecCCCc---ceeeEEEccCCCeEEEEecCCCCCCCCCCeEEEEEcc
Q 021657          229 TNYPAGLFFQHAGHRD---KVVDFHWNASDPWTVVSVSDDCDSTGGGGTLQIWRMS  281 (309)
Q Consensus       229 ~~~~~~~~~~~~~~~~---~v~~~~~~~~~~~~~~s~s~d~~s~~~dg~v~vw~~~  281 (309)
                          ..++..+..|..   .+.++.|+  +..++ +       ++.||.|++||.+
T Consensus       270 ----~~~~~~l~~~~~~~~~~~~~~~~--~~~l~-s-------~s~dG~i~~wd~d  311 (311)
T d1nr0a1         270 ----LKVEKTIPVGTRIEDQQLGIIWT--KQALV-S-------ISANGFINFVNPE  311 (311)
T ss_dssp             ----TEEEEEEECCSSGGGCEEEEEEC--SSCEE-E-------EETTCCEEEEETT
T ss_pred             ----CcEEEEEECCCCccceEEEEEec--CCEEE-E-------EECCCEEEEEeCC
Confidence                334445554432   44556665  44444 4       4445999999974

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

Probab=100.00  E-value=1.1e-39  Score=263.01  Aligned_cols=242  Identities=14%  Similarity=0.150  Sum_probs=193.7

Q ss_pred             ceEEEEECCCCCEEEEecCCCcEEEEeCCccccccccCCccccccCCCCceeecCCCCCCCCcccCCCCCcCcccccccc
Q 021657           11 AEFALAMCPTEPYVLSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGH   90 (309)
Q Consensus        11 ~V~~~~~~~~~~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   90 (309)
                      +|+|++|+|+|++||+|+.||.|+|||++++                                      ....+..+.+|
T Consensus         9 pIt~~~~s~dg~~la~~~~~~~i~iw~~~~~--------------------------------------~~~~~~~l~gH   50 (371)
T d1k8kc_           9 PISCHAWNKDRTQIAICPNNHEVHIYEKSGN--------------------------------------KWVQVHELKEH   50 (371)
T ss_dssp             CCCEEEECTTSSEEEEECSSSEEEEEEEETT--------------------------------------EEEEEEEEECC
T ss_pred             CeEEEEECCCCCEEEEEeCCCEEEEEECCCC--------------------------------------CEEEEEEecCC
Confidence            8999999999999999999999999998642                                      22235667899


Q ss_pred             cCCeEEEEEecCCCcEEEEEcCCCeEEEEEcCCCCcceEEEeeccCCceeEEEeccCCCCeEEEEcCCCcEEEEecCCCC
Q 021657           91 EDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLT  170 (309)
Q Consensus        91 ~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~  170 (309)
                      .++|++++|+|++ ++|++|+.|+.|++||+.++.......+..|...|.+++|+| +++.|++++.|+.|++|++....
T Consensus        51 ~~~V~~l~fsp~~-~~l~s~s~D~~i~vWd~~~~~~~~~~~~~~~~~~v~~i~~~p-~~~~l~~~s~d~~i~i~~~~~~~  128 (371)
T d1k8kc_          51 NGQVTGVDWAPDS-NRIVTCGTDRNAYVWTLKGRTWKPTLVILRINRAARCVRWAP-NEKKFAVGSGSRVISICYFEQEN  128 (371)
T ss_dssp             SSCEEEEEEETTT-TEEEEEETTSCEEEEEEETTEEEEEEECCCCSSCEEEEEECT-TSSEEEEEETTSSEEEEEEETTT
T ss_pred             CCCEEEEEECCCC-CEEEEEECCCeEEEEeeccccccccccccccccccccccccc-ccccceeecccCcceeeeeeccc
Confidence            9999999999998 889999999999999998776445556678889999999999 99999999999999999988732


Q ss_pred             CCCCCCceeeeccCCCCeeEEEEecCCCcEEEEecCCCcEEEEeCCcccccccCCC---CCcCCCCceeeeecCCCccee
Q 021657          171 SNGVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGP---RTTNYPAGLFFQHAGHRDKVV  247 (309)
Q Consensus       171 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~dg~i~iwd~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~v~  247 (309)
                      ..  .........|...|.+++|+|++.+ |++|+.|+.+++||+...........   .........+....+|...|.
T Consensus       129 ~~--~~~~~~~~~~~~~v~~v~~~p~~~~-l~s~s~D~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~  205 (371)
T d1k8kc_         129 DW--WVCKHIKKPIRSTVLSLDWHPNSVL-LAAGSCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVH  205 (371)
T ss_dssp             TE--EEEEEECTTCCSCEEEEEECTTSSE-EEEEETTSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCSSCEE
T ss_pred             cc--ccccccccccccccccccccccccc-eeccccCcEEEEEeeccCccccccccccccccccceeeeeeccCccCcEE
Confidence            10  1122334568889999999999996 67999999999999876322111111   111122345667788999999


Q ss_pred             eEEEccCCCeEEEEecCCCCCCCCCCeEEEEEccccccCChhhHhHhhhcccceEEEeeeCC
Q 021657          248 DFHWNASDPWTVVSVSDDCDSTGGGGTLQIWRMSDLIYRPQDEVLAELEKFKAHVISCTSKP  309 (309)
Q Consensus       248 ~~~~~~~~~~~~~s~s~d~~s~~~dg~v~vw~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~P  309 (309)
                      +++|+|++..+ ++++       .|+.|++||+.      .++++.++..|..+|.+++|+|
T Consensus       206 ~~~~s~~g~~l-~s~~-------~d~~i~iwd~~------~~~~~~~~~~~~~~v~s~~fs~  253 (371)
T d1k8kc_         206 GVCFSANGSRV-AWVS-------HDSTVCLADAD------KKMAVATLASETLPLLAVTFIT  253 (371)
T ss_dssp             EEEECSSSSEE-EEEE-------TTTEEEEEEGG------GTTEEEEEECSSCCEEEEEEEE
T ss_pred             EEEeecccccc-cccc-------cCCcceEEeee------cccceeeeecccccceeeeecC
Confidence            99999988765 4444       44999999998      6788888999999999999975

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

Probab=100.00  E-value=3e-39  Score=256.91  Aligned_cols=231  Identities=15%  Similarity=0.284  Sum_probs=192.1

Q ss_pred             cccCCCCCcceEEEEECCCCCEEEEecCCCcEEEEeCCccccccccCCccccccCCCCceeecCCCCCCCCcccCCCCCc
Q 021657            2 EILTGHQDNAEFALAMCPTEPYVLSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSV   81 (309)
Q Consensus         2 ~~l~~H~~~~V~~~~~~~~~~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (309)
                      ++|+||++ +|++|+|+|++++|+||+.||+|+|||+.+                                        .
T Consensus        49 ~tL~GH~~-~I~~l~~s~~~~~l~sgs~Dg~v~iWd~~~----------------------------------------~   87 (340)
T d1tbga_          49 RTLRGHLA-KIYAMHWGTDSRLLVSASQDGKLIIWDSYT----------------------------------------T   87 (340)
T ss_dssp             EEECCCSS-CEEEEEECTTSSEEEEEETTTEEEEEETTT----------------------------------------T
T ss_pred             EEECCCCC-CEEEEEECCCCCEEEEEECCCceeeeeccc----------------------------------------c
Confidence            57999999 899999999999999999999999999974                                        3


Q ss_pred             CcccccccccCCeEEEEEecCCCcEEEEEcCCCeEEEEEcCCCCcc----------------------------------
Q 021657           82 GPRGIYNGHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSP----------------------------------  127 (309)
Q Consensus        82 ~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~----------------------------------  127 (309)
                      +.+..+..|...|.+++|+|++ .++++|+.|+.+++|+.......                                  
T Consensus        88 ~~~~~~~~~~~~v~~v~~~~~~-~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  166 (340)
T d1tbga_          88 NKVHAIPLRSSWVMTCAYAPSG-NYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQIVTSSGDTTC  166 (340)
T ss_dssp             EEEEEEECSCSCEEEEEECTTS-SEEEEEETTCCEEEEESSSSCSCCCEEEEECCCSSCEEEEEEEETTEEEEEETTTEE
T ss_pred             eeEEEEecccccEEeeEeeccc-eeeeeecccceeecccccccccccccceecccccccccccccccccccccccccccc
Confidence            4456677899999999999998 88999999999999997543210                                  


Q ss_pred             ---------eEEEeeccCCceeEEEeccCCCCeEEEEcCCCcEEEEecCCCCCCCCCCceeeeccCCCCeeEEEEecCCC
Q 021657          128 ---------VIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWSPDKS  198 (309)
Q Consensus       128 ---------~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~  198 (309)
                               .......+...+....+.+ ...++++|+.|+.|++||+++      ++++..+.+|...|++++|+|++.
T Consensus       167 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~d~~v~i~d~~~------~~~~~~~~~h~~~i~~v~~~p~~~  239 (340)
T d1tbga_         167 ALWDIETGQQTTTFTGHTGDVMSLSLAP-DTRLFVSGACDASAKLWDVRE------GMCRQTFTGHESDINAICFFPNGN  239 (340)
T ss_dssp             EEEETTTTEEEEEEECCSSCEEEEEECT-TSSEEEEEETTTEEEEEETTT------TEEEEEECCCSSCEEEEEECTTSS
T ss_pred             cccccccccccccccccceeEeeecccc-ccceeEEeecCceEEEEECCC------CcEEEEEeCCCCCeEEEEECCCCC
Confidence                     1111223445567777778 889999999999999999999      889999999999999999999999


Q ss_pred             cEEEEecCCCcEEEEeCCcccccccCCCCCcCCCCceeeeecCCCcceeeEEEccCCCeEEEEecCCCCCCCCCCeEEEE
Q 021657          199 SVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKVVDFHWNASDPWTVVSVSDDCDSTGGGGTLQIW  278 (309)
Q Consensus       199 ~l~~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~s~d~~s~~~dg~v~vw  278 (309)
                      + |++|+.||.|++||++.....             .......+...|.+++|+|++.+++        +|+.||.|++|
T Consensus       240 ~-l~s~s~d~~i~~~~~~~~~~~-------------~~~~~~~~~~~i~~~~~s~~~~~l~--------~g~~dg~i~iw  297 (340)
T d1tbga_         240 A-FATGSDDATCRLFDLRADQEL-------------MTYSHDNIICGITSVSFSKSGRLLL--------AGYDDFNCNVW  297 (340)
T ss_dssp             E-EEEEETTSCEEEEETTTTEEE-------------EEECCTTCCSCEEEEEECSSSCEEE--------EEETTSCEEEE
T ss_pred             E-EEEEeCCCeEEEEeecccccc-------------cccccccccCceEEEEECCCCCEEE--------EEECCCEEEEE
Confidence            5 679999999999999873221             1233456677899999999887655        44455999999


Q ss_pred             EccccccCChhhHhHhhhcccceEEEeeeCC
Q 021657          279 RMSDLIYRPQDEVLAELEKFKAHVISCTSKP  309 (309)
Q Consensus       279 ~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~P  309 (309)
                      |+.      +++++.++.+|.++|++++|+|
T Consensus       298 d~~------~~~~~~~~~~H~~~V~~l~~s~  322 (340)
T d1tbga_         298 DAL------KADRAGVLAGHDNRVSCLGVTD  322 (340)
T ss_dssp             ETT------TCCEEEEECCCSSCEEEEEECT
T ss_pred             ECC------CCcEEEEEcCCCCCEEEEEEeC
Confidence            998      6888899999999999999987

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=6.2e-39  Score=255.39  Aligned_cols=257  Identities=19%  Similarity=0.311  Sum_probs=205.3

Q ss_pred             CCCCcceEEEEECCCCCEEEEecCCCcEEEEeCCccccccccC---------CccccccCCCCceeecCCCCCCCCcccC
Q 021657            6 GHQDNAEFALAMCPTEPYVLSGGKDKSVVLWSIQDHITSSATD---------PATAKSAGSSGSIIKQSPKPGDGNDKAA   76 (309)
Q Consensus         6 ~H~~~~V~~~~~~~~~~~l~t~~~dg~i~vwd~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~   76 (309)
                      +|.. +|++++|+|+|++|+||+ ||.|+|||+.+........         ............  .+..+..++.+.+|
T Consensus        49 ~H~~-~V~~v~fs~~g~~latg~-dg~V~iWd~~~~~~~~~~~~~~~~~h~~~I~~v~~s~dg~--~l~s~~~dg~i~iw  124 (337)
T d1gxra_          49 NHGE-VVCAVTISNPTRHVYTGG-KGCVKVWDISHPGNKSPVSQLDCLNRDNYIRSCKLLPDGC--TLIVGGEASTLSIW  124 (337)
T ss_dssp             CCSS-CCCEEEECSSSSEEEEEC-BSEEEEEETTSTTCCSCSEEEECSCTTSBEEEEEECTTSS--EEEEEESSSEEEEE
T ss_pred             CCCC-cEEEEEECCCCCEEEEEE-CCEEEEEEccCCcccceeEEeeecCCCCcEEEEEEcCCCC--EEEEeecccccccc
Confidence            6888 899999999999999998 8999999998653221111         111112222222  22334567889999


Q ss_pred             CCCCc--CcccccccccCCeEEEEEecCCCcEEEEEcCCCeEEEEEcCCCCcceEEEeeccCCceeEEEeccCCCCeEEE
Q 021657           77 DGPSV--GPRGIYNGHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILT  154 (309)
Q Consensus        77 ~~~~~--~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~  154 (309)
                      +....  +....+..|...+.++.|+|++ .++++++.|+.|++||+.+++  .......|...|.+++|++ ++..+++
T Consensus       125 d~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~s~~~d~~i~~~~~~~~~--~~~~~~~~~~~v~~l~~s~-~~~~~~~  200 (337)
T d1gxra_         125 DLAAPTPRIKAELTSSAPACYALAISPDS-KVCFSCCSDGNIAVWDLHNQT--LVRQFQGHTDGASCIDISN-DGTKLWT  200 (337)
T ss_dssp             ECCCC--EEEEEEECSSSCEEEEEECTTS-SEEEEEETTSCEEEEETTTTE--EEEEECCCSSCEEEEEECT-TSSEEEE
T ss_pred             ccccccccccccccccccccccccccccc-ccccccccccccccccccccc--ccccccccccccccccccc-ccccccc
Confidence            87644  4456678899999999999998 889999999999999998877  6777788999999999999 9999999


Q ss_pred             EcCCCcEEEEecCCCCCCCCCCceeeeccCCCCeeEEEEecCCCcEEEEecCCCcEEEEeCCcccccccCCCCCcCCCCc
Q 021657          155 GSADNSVRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAG  234 (309)
Q Consensus       155 ~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~  234 (309)
                      ++.|+.|++||+++      ++.+..+. +...|.+++|+|++.. +++++.|+.+++||++...               
T Consensus       201 ~~~d~~v~i~d~~~------~~~~~~~~-~~~~i~~l~~~~~~~~-l~~~~~d~~i~i~d~~~~~---------------  257 (337)
T d1gxra_         201 GGLDNTVRSWDLRE------GRQLQQHD-FTSQIFSLGYCPTGEW-LAVGMESSNVEVLHVNKPD---------------  257 (337)
T ss_dssp             EETTSEEEEEETTT------TEEEEEEE-CSSCEEEEEECTTSSE-EEEEETTSCEEEEETTSSC---------------
T ss_pred             cccccccccccccc------ceeecccc-cccceEEEEEcccccc-cceeccccccccccccccc---------------
Confidence            99999999999998      77777765 7789999999999996 5699999999999998721               


Q ss_pred             eeeeecCCCcceeeEEEccCCCeEEEEecCCCCCCCCCCeEEEEEccccccCChhhHhHhhhcccceEEEeeeCC
Q 021657          235 LFFQHAGHRDKVVDFHWNASDPWTVVSVSDDCDSTGGGGTLQIWRMSDLIYRPQDEVLAELEKFKAHVISCTSKP  309 (309)
Q Consensus       235 ~~~~~~~~~~~v~~~~~~~~~~~~~~s~s~d~~s~~~dg~v~vw~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~P  309 (309)
                       ......|...|++++|+|++.+++        +|+.||.|++||+.      .++++..+ +|.+.|.+++|+|
T Consensus       258 -~~~~~~~~~~i~~v~~s~~g~~l~--------s~s~Dg~i~iwd~~------~~~~~~~~-~~~~~v~~~~~s~  316 (337)
T d1gxra_         258 -KYQLHLHESCVLSLKFAYCGKWFV--------STGKDNLLNAWRTP------YGASIFQS-KESSSVLSCDISV  316 (337)
T ss_dssp             -EEEECCCSSCEEEEEECTTSSEEE--------EEETTSEEEEEETT------TCCEEEEE-ECSSCEEEEEECT
T ss_pred             -cccccccccccceEEECCCCCEEE--------EEeCCCeEEEEECC------CCCEEEEc-cCCCCEEEEEEeC
Confidence             234567899999999999888655        44455999999998      56666554 4889999999987

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=100.00  E-value=3.8e-37  Score=241.89  Aligned_cols=227  Identities=16%  Similarity=0.196  Sum_probs=187.9

Q ss_pred             ceEEEEECCCCCEEEEecCCCcEEEEeCCccccccccCCccccccCCCCceeecCCCCCCCCcccCCCCCcCcccccccc
Q 021657           11 AEFALAMCPTEPYVLSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGH   90 (309)
Q Consensus        11 ~V~~~~~~~~~~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   90 (309)
                      .+..++++|+|+.|+.++ ++.|.+||+++                                        ......+.+|
T Consensus        19 ~~~~~a~~~~g~~l~~~~-~~~v~i~~~~~----------------------------------------~~~~~~~~~H   57 (311)
T d1nr0a1          19 TAVVLGNTPAGDKIQYCN-GTSVYTVPVGS----------------------------------------LTDTEIYTEH   57 (311)
T ss_dssp             CCCCCEECTTSSEEEEEE-TTEEEEEETTC----------------------------------------SSCCEEECCC
T ss_pred             CeEEEEEcCCCCEEEEEe-CCEEEEEECCC----------------------------------------CceeEEEcCC
Confidence            556889999999999885 56799999974                                        3345567789


Q ss_pred             cCCeEEEEEecCCCcEEEEEcCCCeEEEEEcCCCCcceEEEeeccCCceeEEEeccCCCCeEEEEcC--CCcEEEEecCC
Q 021657           91 EDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSA--DNSVRMFDRRN  168 (309)
Q Consensus        91 ~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~--dg~i~i~d~~~  168 (309)
                      ...|++++|+|+| ++|++|+.||+|++||+...+......+..|..+|.+++|+| ++++|++++.  +..+++|++++
T Consensus        58 ~~~v~~~~~sp~g-~~latg~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~-d~~~l~~~~~~~~~~~~v~~~~~  135 (311)
T d1nr0a1          58 SHQTTVAKTSPSG-YYCASGDVHGNVRIWDTTQTTHILKTTIPVFSGPVKDISWDS-ESKRIAAVGEGRERFGHVFLFDT  135 (311)
T ss_dssp             SSCEEEEEECTTS-SEEEEEETTSEEEEEESSSTTCCEEEEEECSSSCEEEEEECT-TSCEEEEEECCSSCSEEEEETTT
T ss_pred             CCCEEEEEEeCCC-CeEeccccCceEeeeeeeccccccccccccccCccccccccc-ccccccccccccccccccccccc
Confidence            9999999999998 899999999999999999887655667788999999999999 8999988875  45699999998


Q ss_pred             CCCCCCCCceeeeccCCCCeeEEEEecCCCcEEEEecCCCcEEEEeCCcccccccCCCCCcCCCCceeeeecCCCcceee
Q 021657          169 LTSNGVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKVVD  248 (309)
Q Consensus       169 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~  248 (309)
                            ++.+..+.+|...|++++|+|++++++++|+.|+.|++||++.               ........+|..+|++
T Consensus       136 ------~~~~~~l~~h~~~v~~v~~~~~~~~~l~sgs~d~~i~i~d~~~---------------~~~~~~~~~~~~~i~~  194 (311)
T d1nr0a1         136 ------GTSNGNLTGQARAMNSVDFKPSRPFRIISGSDDNTVAIFEGPP---------------FKFKSTFGEHTKFVHS  194 (311)
T ss_dssp             ------CCBCBCCCCCSSCEEEEEECSSSSCEEEEEETTSCEEEEETTT---------------BEEEEEECCCSSCEEE
T ss_pred             ------ccccccccccccccccccccccceeeecccccccccccccccc---------------cccccccccccccccc
Confidence                  7888899999999999999999998888999999999999987               4456677889999999


Q ss_pred             EEEccCCCeEEEEecCCCCCCCCCCeEEEEEccccccCChh-hHhHhhhcccceEEEeeeCC
Q 021657          249 FHWNASDPWTVVSVSDDCDSTGGGGTLQIWRMSDLIYRPQD-EVLAELEKFKAHVISCTSKP  309 (309)
Q Consensus       249 ~~~~~~~~~~~~s~s~d~~s~~~dg~v~vw~~~~~~~~~~~-~~~~~~~~h~~~v~~~~~~P  309 (309)
                      +.|+|++.+++        +|+.|+.|++||+......... .......+|.+.|.+++|+|
T Consensus       195 v~~~p~~~~l~--------~~~~d~~v~~~d~~~~~~~~~~~~~~~~~~~h~~~V~~~~~s~  248 (311)
T d1nr0a1         195 VRYNPDGSLFA--------STGGDGTIVLYNGVDGTKTGVFEDDSLKNVAHSGSVFGLTWSP  248 (311)
T ss_dssp             EEECTTSSEEE--------EEETTSCEEEEETTTCCEEEECBCTTSSSCSSSSCEEEEEECT
T ss_pred             cccCccccccc--------cccccccccccccccccccccccccccccccccccccccccCC
Confidence            99999887655        4444599999999843211111 11123457899999999987

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=1.2e-37  Score=252.49  Aligned_cols=271  Identities=20%  Similarity=0.309  Sum_probs=203.1

Q ss_pred             CCCCcceEEEEECCCCCEEEEecCCCcEEEEeCCccccccccCCccc----------------------cccCCCCceee
Q 021657            6 GHQDNAEFALAMCPTEPYVLSGGKDKSVVLWSIQDHITSSATDPATA----------------------KSAGSSGSIIK   63 (309)
Q Consensus         6 ~H~~~~V~~~~~~~~~~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~----------------------~~~~~~~~~~~   63 (309)
                      +|++ +|+||+|+|+|++|++|+ |++|+|||+.++...........                      .......  ..
T Consensus        60 ~H~~-~V~~l~fs~dg~~lasg~-d~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~~--~~  135 (388)
T d1erja_          60 DHTS-VVCCVKFSNDGEYLATGC-NKTTQVYRVSDGSLVARLSDDSAANKDPENLNTSSSPSSDLYIRSVCFSPDG--KF  135 (388)
T ss_dssp             ECSS-CCCEEEECTTSSEEEEEC-BSCEEEEETTTCCEEEEECC-----------------CCCCBEEEEEECTTS--SE
T ss_pred             CCCC-cEEEEEECCCCCEEEEEe-CCeEEEEEecccceEeeecccccccccccccccccccCCCCCEEEEEECCCC--Cc
Confidence            6998 899999999999999987 89999999987643322211100                      0011111  12


Q ss_pred             cCCCCCCCCcccCCCCCcCcccccccccCCeEEEEEecCCCcEEEEEcCCCeEEEEEcCCCCcceEEEeeccCCceeEEE
Q 021657           64 QSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVD  143 (309)
Q Consensus        64 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~  143 (309)
                      +..+..++.+++|+....+.+..+.+|...|.++.|++++ ..+++++.++.+++||..+..  ...... +.....++.
T Consensus       136 l~s~~~dg~v~i~~~~~~~~~~~~~~h~~~v~~~~~~~~~-~~~~~~~~~~~i~~~d~~~~~--~~~~~~-~~~~~~~~~  211 (388)
T d1erja_         136 LATGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFPSG-DKLVSGSGDRTVRIWDLRTGQ--CSLTLS-IEDGVTTVA  211 (388)
T ss_dssp             EEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTS-SEEEEEETTSEEEEEETTTTE--EEEEEE-CSSCEEEEE
T ss_pred             ceeccccccccccccccccccccccccccccccccccccc-ccccccccceeeeeeeccccc--cccccc-ccccccccc
Confidence            2334567889999999999999999999999999999988 789999999999999998766  444444 444555666


Q ss_pred             eccCCCCeEEEEcCCCcEEEEecCCCCCCCCCCceeee-------ccCCCCeeEEEEecCCCcEEEEecCCCcEEEEeCC
Q 021657          144 WNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKF-------EGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYE  216 (309)
Q Consensus       144 ~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~-------~~~~~~v~~~~~~~~~~~l~~~~~~dg~i~iwd~~  216 (309)
                      +.+.++++|++++.||.|++||.++      +..+..+       .+|...|++++|+|++++ |++++.||.|++||++
T Consensus       212 ~~~~~~~~l~~~~~d~~i~i~~~~~------~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~-l~s~~~d~~i~iwd~~  284 (388)
T d1erja_         212 VSPGDGKYIAAGSLDRAVRVWDSET------GFLVERLDSENESGTGHKDSVYSVVFTRDGQS-VVSGSLDRSVKLWNLQ  284 (388)
T ss_dssp             ECSTTCCEEEEEETTSCEEEEETTT------CCEEEEEC------CCCSSCEEEEEECTTSSE-EEEEETTSEEEEEEC-
T ss_pred             ccCCCCCeEEEEcCCCeEEEeeccc------CccceeeccccccccCCCCCEEEEEECCCCCE-EEEEECCCcEEEEecc
Confidence            6665889999999999999999998      5555544       357789999999999996 6799999999999998


Q ss_pred             cccccccCCCCCcCCCCceeeeecCCCcceeeEEEccCCCeEEEEecCCCCCCCCCCeEEEEEccccccCChhhHhHhhh
Q 021657          217 KVGKKVEQGPRTTNYPAGLFFQHAGHRDKVVDFHWNASDPWTVVSVSDDCDSTGGGGTLQIWRMSDLIYRPQDEVLAELE  296 (309)
Q Consensus       217 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~s~d~~s~~~dg~v~vw~~~~~~~~~~~~~~~~~~  296 (309)
                      ..........   ............|...|.+++|+|++.+++        +|+.||.|++||+.      +++++.+++
T Consensus       285 ~~~~~~~~~~---~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~--------sg~~dg~i~vwd~~------~~~~~~~l~  347 (388)
T d1erja_         285 NANNKSDSKT---PNSGTCEVTYIGHKDFVLSVATTQNDEYIL--------SGSKDRGVLFWDKK------SGNPLLMLQ  347 (388)
T ss_dssp             -----------------CEEEEEECCSSCEEEEEECGGGCEEE--------EEETTSEEEEEETT------TCCEEEEEE
T ss_pred             CCcccccccc---ccccceeeecccccceEEEEEECCCCCEEE--------EEeCCCEEEEEECC------CCcEEEEEe
Confidence            7433222111   112334566678999999999999888655        45555999999999      788899999


Q ss_pred             cccceEEEeeeC
Q 021657          297 KFKAHVISCTSK  308 (309)
Q Consensus       297 ~h~~~v~~~~~~  308 (309)
                      +|.+.|.++++.
T Consensus       348 ~H~~~V~~~~~~  359 (388)
T d1erja_         348 GHRNSVISVAVA  359 (388)
T ss_dssp             CCSSCEEEEEEC
T ss_pred             CCCCCEEEEEEe
Confidence            999999998764

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=8.5e-37  Score=242.98  Aligned_cols=238  Identities=16%  Similarity=0.274  Sum_probs=187.0

Q ss_pred             cCCCCCcceEEEEECCCCCEEEEecCCCcEEEEeCCcccccc--c--cC--CccccccCCCCceeecCCCCCCCCcccCC
Q 021657            4 LTGHQDNAEFALAMCPTEPYVLSGGKDKSVVLWSIQDHITSS--A--TD--PATAKSAGSSGSIIKQSPKPGDGNDKAAD   77 (309)
Q Consensus         4 l~~H~~~~V~~~~~~~~~~~l~t~~~dg~i~vwd~~~~~~~~--~--~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   77 (309)
                      ..+|.+ .|++++|+|++++|++|+.||.|++||+.......  .  ..  ............  .+..+..+..+.+|+
T Consensus        93 ~~~h~~-~I~~v~~s~dg~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~--~l~s~~~d~~i~~~~  169 (337)
T d1gxra_          93 CLNRDN-YIRSCKLLPDGCTLIVGGEASTLSIWDLAAPTPRIKAELTSSAPACYALAISPDSK--VCFSCCSDGNIAVWD  169 (337)
T ss_dssp             CSCTTS-BEEEEEECTTSSEEEEEESSSEEEEEECCCC--EEEEEEECSSSCEEEEEECTTSS--EEEEEETTSCEEEEE
T ss_pred             ecCCCC-cEEEEEEcCCCCEEEEeecccccccccccccccccccccccccccccccccccccc--ccccccccccccccc
Confidence            457888 89999999999999999999999999987542111  1  11  111111111111  222345667889999


Q ss_pred             CCCcCcccccccccCCeEEEEEecCCCcEEEEEcCCCeEEEEEcCCCCcceEEEeeccCCceeEEEeccCCCCeEEEEcC
Q 021657           78 GPSVGPRGIYNGHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSA  157 (309)
Q Consensus        78 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~  157 (309)
                      ..+.+......+|...|.+++|++++ ..+++++.|+.|++||+++++  .... ..|...|.+++|+| +++++++++.
T Consensus       170 ~~~~~~~~~~~~~~~~v~~l~~s~~~-~~~~~~~~d~~v~i~d~~~~~--~~~~-~~~~~~i~~l~~~~-~~~~l~~~~~  244 (337)
T d1gxra_         170 LHNQTLVRQFQGHTDGASCIDISNDG-TKLWTGGLDNTVRSWDLREGR--QLQQ-HDFTSQIFSLGYCP-TGEWLAVGME  244 (337)
T ss_dssp             TTTTEEEEEECCCSSCEEEEEECTTS-SEEEEEETTSEEEEEETTTTE--EEEE-EECSSCEEEEEECT-TSSEEEEEET
T ss_pred             cccccccccccccccccccccccccc-cccccccccccccccccccce--eecc-cccccceEEEEEcc-cccccceecc
Confidence            99888888889999999999999998 789999999999999998877  3443 35788999999999 9999999999


Q ss_pred             CCcEEEEecCCCCCCCCCCceeeeccCCCCeeEEEEecCCCcEEEEecCCCcEEEEeCCcccccccCCCCCcCCCCceee
Q 021657          158 DNSVRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFF  237 (309)
Q Consensus       158 dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~  237 (309)
                      |+.+++||++.      .+.. ....|...|++++|+|++++ |++++.||.|++||+..               ...+.
T Consensus       245 d~~i~i~d~~~------~~~~-~~~~~~~~i~~v~~s~~g~~-l~s~s~Dg~i~iwd~~~---------------~~~~~  301 (337)
T d1gxra_         245 SSNVEVLHVNK------PDKY-QLHLHESCVLSLKFAYCGKW-FVSTGKDNLLNAWRTPY---------------GASIF  301 (337)
T ss_dssp             TSCEEEEETTS------SCEE-EECCCSSCEEEEEECTTSSE-EEEEETTSEEEEEETTT---------------CCEEE
T ss_pred             ccccccccccc------cccc-cccccccccceEEECCCCCE-EEEEeCCCeEEEEECCC---------------CCEEE
Confidence            99999999997      5544 55668899999999999996 67999999999999987               22333


Q ss_pred             eecCCCcceeeEEEccCCCeEEEEecCCCCCCCCCCeEEEEEcc
Q 021657          238 QHAGHRDKVVDFHWNASDPWTVVSVSDDCDSTGGGGTLQIWRMS  281 (309)
Q Consensus       238 ~~~~~~~~v~~~~~~~~~~~~~~s~s~d~~s~~~dg~v~vw~~~  281 (309)
                      . ..|...|.+++|+|++.+|+        +|+.||+|+|||+-
T Consensus       302 ~-~~~~~~v~~~~~s~d~~~l~--------t~s~D~~I~vWdl~  336 (337)
T d1gxra_         302 Q-SKESSSVLSCDISVDDKYIV--------TGSGDKKATVYEVI  336 (337)
T ss_dssp             E-EECSSCEEEEEECTTSCEEE--------EEETTSCEEEEEEE
T ss_pred             E-ccCCCCEEEEEEeCCCCEEE--------EEeCCCeEEEEEEE
Confidence            3 34788999999999887655        44455999999973

>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=8.1e-36  Score=235.97  Aligned_cols=249  Identities=18%  Similarity=0.269  Sum_probs=182.8

Q ss_pred             ccCCCCCcceEEEEECC--CCCEEEEecCCCcEEEEeCCccccccccC------------CccccccCCCCceeecCCCC
Q 021657            3 ILTGHQDNAEFALAMCP--TEPYVLSGGKDKSVVLWSIQDHITSSATD------------PATAKSAGSSGSIIKQSPKP   68 (309)
Q Consensus         3 ~l~~H~~~~V~~~~~~~--~~~~l~t~~~dg~i~vwd~~~~~~~~~~~------------~~~~~~~~~~~~~~~~~~~~   68 (309)
                      .+.+|...+|++++|+|  ++.+|++|+.||+|+|||+..........            +...................
T Consensus        57 ~~~gh~~~~v~~v~fsP~~~g~~lasgs~Dg~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~~  136 (325)
T d1pgua1          57 QFTGHGSSVVTTVKFSPIKGSQYLCSGDESGKVIVWGWTFDKESNSVEVNVKSEFQVLAGPISDISWDFEGRRLCVVGEG  136 (325)
T ss_dssp             EECTTTTSCEEEEEECSSTTCCEEEEEETTSEEEEEEEEEEGGGTEEEEEEEEEEECCSSCEEEEEECTTSSEEEEEECC
T ss_pred             EEeCCCCCCEEEEEEeeCCCCCEEEEEeCCCCEEEeeecCCcceeeeecccccccccccCcEEEEEECCCCCccceeecc
Confidence            56788766899999998  57899999999999999997653222111            11112222233333333344


Q ss_pred             CCCCcccCCCCCcCcccccccccCCeEEEEEecCCCcEEEEEcCCCeEEEEEcCCCCcce-EEEeeccCCceeEEEeccC
Q 021657           69 GDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPV-IKVEKAHDADLHCVDWNPL  147 (309)
Q Consensus        69 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~-~~~~~~~~~~v~~~~~~~~  147 (309)
                      .+....+|+..+.+.+..+.+|...|++++|+|+++.++++++.|+.+++||....+... ......|...|.+++|+|+
T Consensus       137 ~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~d~~v~~~d~~~~~~~~~~~~~~~~~~~v~~v~~~pd  216 (325)
T d1pgua1         137 RDNFGVFISWDSGNSLGEVSGHSQRINACHLKQSRPMRSMTVGDDGSVVFYQGPPFKFSASDRTHHKQGSFVRDVEFSPD  216 (325)
T ss_dssp             SSCSEEEEETTTCCEEEECCSCSSCEEEEEECSSSSCEEEEEETTTEEEEEETTTBEEEEEECSSSCTTCCEEEEEECST
T ss_pred             ccceEEEEeecccccceeeeecccccccccccccccceEEEeecccccccccccccccceecccccCCCCccEEeeeccc
Confidence            456677777788888889999999999999999986778899999999999987665211 1123456788999999995


Q ss_pred             CCCeEEEEcCCCcEEEEecCCCCCCCCCCceeeeccCCCCeeEEEEe---cCCCcEEEEecCCCcEEEEeCCcccccccC
Q 021657          148 DDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWS---PDKSSVFGSSAEDGLLNIWDYEKVGKKVEQ  224 (309)
Q Consensus       148 ~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~v~~~~~~---~~~~~l~~~~~~dg~i~iwd~~~~~~~~~~  224 (309)
                      .+.++++++.|+.|++||+++      ++.+..+.+|..++..+.|+   |++++ |++++.|+.|+|||++.       
T Consensus       217 ~~~~l~s~~~d~~i~iwd~~~------~~~~~~l~~~~~~v~~~~~s~~~~dg~~-l~s~s~D~~i~iwd~~~-------  282 (325)
T d1pgua1         217 SGEFVITVGSDRKISCFDGKS------GEFLKYIEDDQEPVQGGIFALSWLDSQK-FATVGADATIRVWDVTT-------  282 (325)
T ss_dssp             TCCEEEEEETTCCEEEEETTT------CCEEEECCBTTBCCCSCEEEEEESSSSE-EEEEETTSEEEEEETTT-------
T ss_pred             cceeccccccccceeeeeecc------ccccccccccccccccceeeeeccCCCE-EEEEeCCCeEEEEECCC-------
Confidence            578999999999999999998      88999999888887766665   67875 57999999999999987       


Q ss_pred             CCCCcCCCCceeeeecCC--CcceeeEEEccCCCeEEEEecCCCCCCCCCCeEEEEEc
Q 021657          225 GPRTTNYPAGLFFQHAGH--RDKVVDFHWNASDPWTVVSVSDDCDSTGGGGTLQIWRM  280 (309)
Q Consensus       225 ~~~~~~~~~~~~~~~~~~--~~~v~~~~~~~~~~~~~~s~s~d~~s~~~dg~v~vw~~  280 (309)
                              .+++..+..|  ...+..+++.+.++..++++|.|       |.|++||+
T Consensus       283 --------~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d-------g~i~vwdl  325 (325)
T d1pgua1         283 --------SKCVQKWTLDKQQLGNQQVGVVATGNGRIISLSLD-------GTLNFYEL  325 (325)
T ss_dssp             --------TEEEEEEECCTTCGGGCEEEEEEEETTEEEEEETT-------SCEEEEET
T ss_pred             --------CCEEEEEEecCCcccCeEEEEEECCCCEEEEEECC-------CEEEEEEC
Confidence                    2334444443  33444555544444346656655       99999996

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=100.00  E-value=1.5e-35  Score=231.81  Aligned_cols=261  Identities=14%  Similarity=0.151  Sum_probs=163.1

Q ss_pred             cccCCCCCcceEEEEECCCCCEEEEecCCCcEEEEeCCccccccccCCc-----cccccCCCCceeecCCCCCCCCcccC
Q 021657            2 EILTGHQDNAEFALAMCPTEPYVLSGGKDKSVVLWSIQDHITSSATDPA-----TAKSAGSSGSIIKQSPKPGDGNDKAA   76 (309)
Q Consensus         2 ~~l~~H~~~~V~~~~~~~~~~~l~t~~~dg~i~vwd~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~   76 (309)
                      ++++||.+ +|++++|+|++++|+||+.||+|++||++++.........     .............   ...++.+.+|
T Consensus         6 ~~~~GH~~-~V~~l~~s~dg~~l~s~s~Dg~v~vWd~~~~~~~~~~~~~h~~~v~~v~~~~~g~~~~---~~~d~~v~~~   81 (299)
T d1nr0a2           6 QVRYGHNK-AITALSSSADGKTLFSADAEGHINSWDISTGISNRVFPDVHATMITGIKTTSKGDLFT---VSWDDHLKVV   81 (299)
T ss_dssp             EEECCCSS-CEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEECSSCSCSSCEEEEEECTTSCEEE---EETTTEEEEE
T ss_pred             eEcCCCCC-CcEEEEECCCCCEEEEEcCCCeEEEEECCCCcEEEEEcCCCCCcEEEEEeeccceeec---ccceeeEEEe
Confidence            68999999 8999999999999999999999999999865433222110     0000000000000   0011222222


Q ss_pred             CCCCcCccccc-----ccccCCeEEEEEecCCCcEEEEEcCCCeEEEEEcCCCCcceEEEeeccCCceeEEEeccCCCCe
Q 021657           77 DGPSVGPRGIY-----NGHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNL  151 (309)
Q Consensus        77 ~~~~~~~~~~~-----~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~  151 (309)
                      +  ........     ..+...+.+++|+|++ .+++++ .++.+.+|+...    ...  ......+.+++|+| ++++
T Consensus        82 ~--~~~~~~~~~~~~~~~~~~~~~~~~~s~~g-~~~~~~-~~~~i~~~~~~~----~~~--~~~~~~~~~~~~s~-~~~~  150 (299)
T d1nr0a2          82 P--AGGSGVDSSKAVANKLSSQPLGLAVSADG-DIAVAA-CYKHIAIYSHGK----LTE--VPISYNSSCVALSN-DKQF  150 (299)
T ss_dssp             C--SSSSSSCTTSCCEEECSSCEEEEEECTTS-SCEEEE-ESSEEEEEETTE----EEE--EECSSCEEEEEECT-TSCE
T ss_pred             c--cCCcccccccccccccccccccccccccc-cccccc-cccccccccccc----ccc--cccccccccccccc-cccc
Confidence            1  00000000     0133445555555555 333332 234555555321    111  12345678899999 9999


Q ss_pred             EEEEcCCCcEEEEecCCCCCCCCCCcee-eeccCCCCeeEEEEecCCCcEEEEecCCCcEEEEeCCcccccccCCCCCcC
Q 021657          152 ILTGSADNSVRMFDRRNLTSNGVGSPIN-KFEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTN  230 (309)
Q Consensus       152 l~~~~~dg~i~i~d~~~~~~~~~~~~~~-~~~~~~~~v~~~~~~~~~~~l~~~~~~dg~i~iwd~~~~~~~~~~~~~~~~  230 (309)
                      +++|+.||.|++||+++      .+... ....|...|++++|+|++.+ +++++.|+.|++||+......         
T Consensus       151 l~~g~~dg~i~~~d~~~------~~~~~~~~~~~~~~i~~~~~~~~~~~-l~~~~~d~~i~~~~~~~~~~~---------  214 (299)
T d1nr0a2         151 VAVGGQDSKVHVYKLSG------ASVSEVKTIVHPAEITSVAFSNNGAF-LVATDQSRKVIPYSVANNFEL---------  214 (299)
T ss_dssp             EEEEETTSEEEEEEEET------TEEEEEEEEECSSCEEEEEECTTSSE-EEEEETTSCEEEEEGGGTTEE---------
T ss_pred             ccccccccccccccccc------cccccccccccccccccccccccccc-ccccccccccccccccccccc---------
Confidence            99999999999999987      44332 33457889999999999996 568999999999999873222         


Q ss_pred             CCCceeeeecCCCcceeeEEEccCCCeEEEEecCCCCCCCCCCeEEEEEccccccCChhhHhHhhh-cccceEEEeeeC
Q 021657          231 YPAGLFFQHAGHRDKVVDFHWNASDPWTVVSVSDDCDSTGGGGTLQIWRMSDLIYRPQDEVLAELE-KFKAHVISCTSK  308 (309)
Q Consensus       231 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~s~d~~s~~~dg~v~vw~~~~~~~~~~~~~~~~~~-~h~~~v~~~~~~  308 (309)
                         .....+.+|..+|++++|+|++.+++        +|+.||.|++||+....    ..++.... .+...|.++.|.
T Consensus       215 ---~~~~~~~~h~~~v~~l~~s~~~~~l~--------sgs~dg~i~iwd~~~~~----~~~~~~~~~~~~~~v~~~~~~  278 (299)
T d1nr0a2         215 ---AHTNSWTFHTAKVACVSWSPDNVRLA--------TGSLDNSVIVWNMNKPS----DHPIIIKGAHAMSSVNSVIWL  278 (299)
T ss_dssp             ---SCCCCCCCCSSCEEEEEECTTSSEEE--------EEETTSCEEEEETTCTT----SCCEEETTSSTTSCEEEEEEE
T ss_pred             ---cccccccccccccccccccccccceE--------EEcCCCEEEEEECCCCC----cceEEEecCCCCCcEEEEEEC
Confidence               22345677999999999999887655        44455999999998432    12222222 344566666654

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

Probab=100.00  E-value=5.2e-35  Score=235.59  Aligned_cols=214  Identities=14%  Similarity=0.212  Sum_probs=172.8

Q ss_pred             cccCCCCCcceEEEEECCCCCEEEEecCCCcEEEEeCCccccccccCCccccccCCCCceeecCCCCCCCCcccCCCCCc
Q 021657            2 EILTGHQDNAEFALAMCPTEPYVLSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSV   81 (309)
Q Consensus         2 ~~l~~H~~~~V~~~~~~~~~~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (309)
                      +.|++|.+ +|++++|+|++++|++|+.|++|+|||+.+.                                      ..
T Consensus        45 ~~l~gH~~-~V~~l~fsp~~~~l~s~s~D~~i~vWd~~~~--------------------------------------~~   85 (371)
T d1k8kc_          45 HELKEHNG-QVTGVDWAPDSNRIVTCGTDRNAYVWTLKGR--------------------------------------TW   85 (371)
T ss_dssp             EEEECCSS-CEEEEEEETTTTEEEEEETTSCEEEEEEETT--------------------------------------EE
T ss_pred             EEecCCCC-CEEEEEECCCCCEEEEEECCCeEEEEeeccc--------------------------------------cc
Confidence            46889999 8999999999999999999999999998743                                      12


Q ss_pred             CcccccccccCCeEEEEEecCCCcEEEEEcCCCeEEEEEcCCCCcc--eEEEeeccCCceeEEEeccCCCCeEEEEcCCC
Q 021657           82 GPRGIYNGHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSP--VIKVEKAHDADLHCVDWNPLDDNLILTGSADN  159 (309)
Q Consensus        82 ~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~--~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg  159 (309)
                      .....+.+|...|.+++|+|++ +.|++|+.|+.|++|++......  .......|...|.+++|+| ++.+|++|+.|+
T Consensus        86 ~~~~~~~~~~~~v~~i~~~p~~-~~l~~~s~d~~i~i~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p-~~~~l~s~s~D~  163 (371)
T d1k8kc_          86 KPTLVILRINRAARCVRWAPNE-KKFAVGSGSRVISICYFEQENDWWVCKHIKKPIRSTVLSLDWHP-NSVLLAAGSCDF  163 (371)
T ss_dssp             EEEEECCCCSSCEEEEEECTTS-SEEEEEETTSSEEEEEEETTTTEEEEEEECTTCCSCEEEEEECT-TSSEEEEEETTS
T ss_pred             cccccccccccccccccccccc-ccceeecccCcceeeeeecccccccccccccccccccccccccc-cccceeccccCc
Confidence            2234456788999999999998 88999999999999998776532  2333457888999999999 999999999999


Q ss_pred             cEEEEecCCCCCC------------CCCCceeeeccCCCCeeEEEEecCCCcEEEEecCCCcEEEEeCCcccccccCCCC
Q 021657          160 SVRMFDRRNLTSN------------GVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPR  227 (309)
Q Consensus       160 ~i~i~d~~~~~~~------------~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~dg~i~iwd~~~~~~~~~~~~~  227 (309)
                      .|++||+......            ..+..+.....|...|.+++|+|+++. +++++.|+.|++||+..          
T Consensus       164 ~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~-l~s~~~d~~i~iwd~~~----------  232 (371)
T d1k8kc_         164 KCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSANGSR-VAWVSHDSTVCLADADK----------  232 (371)
T ss_dssp             CEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCSSCEEEEEECSSSSE-EEEEETTTEEEEEEGGG----------
T ss_pred             EEEEEeeccCccccccccccccccccceeeeeeccCccCcEEEEEeeccccc-ccccccCCcceEEeeec----------
Confidence            9999998753211            113455666778899999999999996 67999999999999987          


Q ss_pred             CcCCCCceeeeecCCCcceeeEEEccCCCeEEEEecCCCCCCCCCCeEEEEEcc
Q 021657          228 TTNYPAGLFFQHAGHRDKVVDFHWNASDPWTVVSVSDDCDSTGGGGTLQIWRMS  281 (309)
Q Consensus       228 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~s~d~~s~~~dg~v~vw~~~  281 (309)
                           ...+..+..|..+|.+++|+|++. +++++++        +.+++|...
T Consensus       233 -----~~~~~~~~~~~~~v~s~~fs~d~~-~la~g~d--------~~~~~~~~~  272 (371)
T d1k8kc_         233 -----KMAVATLASETLPLLAVTFITESS-LVAAGHD--------CFPVLFTYD  272 (371)
T ss_dssp             -----TTEEEEEECSSCCEEEEEEEETTE-EEEEETT--------SSCEEEEEE
T ss_pred             -----ccceeeeecccccceeeeecCCCC-EEEEEcC--------CceEEEEee
Confidence                 445677888999999999999764 5654443        567776654

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=100.00  E-value=1.2e-34  Score=227.60  Aligned_cols=243  Identities=20%  Similarity=0.319  Sum_probs=200.0

Q ss_pred             CcccCCCCCcceEEEEECCCCCEEEEecCCCcEEEEeCCccccccccCCccc----cccCCCCceeecCCCCCCCCcccC
Q 021657            1 MEILTGHQDNAEFALAMCPTEPYVLSGGKDKSVVLWSIQDHITSSATDPATA----KSAGSSGSIIKQSPKPGDGNDKAA   76 (309)
Q Consensus         1 l~~l~~H~~~~V~~~~~~~~~~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~   76 (309)
                      +++|++|.+ .|++++|+|++.+++++..++.+.+|+...............    .......  ..+.....++.+.+|
T Consensus        52 ~~~~~~h~~-~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~d~~~~~~  128 (317)
T d1vyhc1          52 ERTLKGHTD-SVQDISFDHSGKLLASCSADMTIKLWDFQGFECIRTMHGHDHNVSSVSIMPNG--DHIVSASRDKTIKMW  128 (317)
T ss_dssp             CEEECCCSS-CEEEEEECTTSSEEEEEETTSCCCEEETTSSCEEECCCCCSSCEEEEEECSSS--SEEEEEETTSEEEEE
T ss_pred             EEEEeCCCC-cEEEEeeecccccccccccccccccccccccccccccccccccceeeeccCCC--ceEEeeccCcceeEe
Confidence            357889999 899999999999999999999999999876643332221111    1111111  112234557888999


Q ss_pred             CCCCcCcccccccccCCeEEEEEecCCCcEEEEEcCCCeEEEEEcCCCCcceEEEeeccCCceeEEEeccC---------
Q 021657           77 DGPSVGPRGIYNGHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPL---------  147 (309)
Q Consensus        77 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~---------  147 (309)
                      +..+.+....+.+|...+.+++|+|++ .+|++++.|+.|++|+..+++  ....+..|...+.+++|+|.         
T Consensus       129 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~l~~~~~d~~v~~~~~~~~~--~~~~~~~~~~~i~~~~~~~~~~~~~~~~~  205 (317)
T d1vyhc1         129 EVQTGYCVKTFTGHREWVRMVRPNQDG-TLIASCSNDQTVRVWVVATKE--CKAELREHRHVVECISWAPESSYSSISEA  205 (317)
T ss_dssp             ETTTCCEEEEEECCSSCEEEEEECTTS-SEEEEEETTSCEEEEETTTCC--EEEEECCCSSCEEEEEECCSCGGGGGGGC
T ss_pred             ecccceeeeEEccCCCcceeeecccCC-CEEEEEeCCCeEEEEeeccce--eeEEEecCCCCceEEEEeeccccceeecc
Confidence            999999999999999999999999998 889999999999999998887  67778889999999999872         


Q ss_pred             ----------CCCeEEEEcCCCcEEEEecCCCCCCCCCCceeeeccCCCCeeEEEEecCCCcEEEEecCCCcEEEEeCCc
Q 021657          148 ----------DDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEK  217 (309)
Q Consensus       148 ----------~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~dg~i~iwd~~~  217 (309)
                                .+..+++++.|+.|++||+++      ++++.++.+|...|.+++|+|++++ |++|+.||.|++||+++
T Consensus       206 ~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~------~~~~~~~~~~~~~v~~~~~~~~~~~-l~s~~~dg~i~iwd~~~  278 (317)
T d1vyhc1         206 TGSETKKSGKPGPFLLSGSRDKTIKMWDVST------GMCLMTLVGHDNWVRGVLFHSGGKF-ILSCADDKTLRVWDYKN  278 (317)
T ss_dssp             CSCC-------CCEEEEEETTSEEEEEETTT------TEEEEEEECCSSCEEEEEECSSSSC-EEEEETTTEEEEECCTT
T ss_pred             ccceeeeeccCCceeEeccCCCEEEEEECCC------CcEEEEEeCCCCCEEEEEECCCCCE-EEEEECCCeEEEEECCC
Confidence                      235789999999999999999      8999999999999999999999996 56999999999999987


Q ss_pred             ccccccCCCCCcCCCCceeeeecCCCcceeeEEEccCCCeEEEEecCCCCCCCCCCeEEEEE
Q 021657          218 VGKKVEQGPRTTNYPAGLFFQHAGHRDKVVDFHWNASDPWTVVSVSDDCDSTGGGGTLQIWR  279 (309)
Q Consensus       218 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~s~d~~s~~~dg~v~vw~  279 (309)
                                     .+++..+.+|..+|++++|+|++++|+        ||+.||+|+|||
T Consensus       279 ---------------~~~~~~~~~h~~~V~~~~~s~~~~~l~--------s~s~Dg~i~iWd  317 (317)
T d1vyhc1         279 ---------------KRCMKTLNAHEHFVTSLDFHKTAPYVV--------TGSVDQTVKVWE  317 (317)
T ss_dssp             ---------------SCCCEEEECCSSCEEEEEECSSSSCEE--------EEETTSEEEEEC
T ss_pred             ---------------CcEEEEEcCCCCCEEEEEEcCCCCEEE--------EEeCCCeEEEeC
Confidence                           445677889999999999999888655        445559999997

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

Probab=100.00  E-value=4.6e-34  Score=226.75  Aligned_cols=243  Identities=21%  Similarity=0.303  Sum_probs=183.2

Q ss_pred             cccCCCCCcceEEEEECCCCCEEEEecCCCcEEEEeCCccccccccCCccccccCCCCc-----eeecCCCCCCCCcccC
Q 021657            2 EILTGHQDNAEFALAMCPTEPYVLSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGS-----IIKQSPKPGDGNDKAA   76 (309)
Q Consensus         2 ~~l~~H~~~~V~~~~~~~~~~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~   76 (309)
                      +.+++|.. +|++++|+|++.++++|+.|+.+++|+.......................     .........+.....+
T Consensus        91 ~~~~~~~~-~v~~v~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  169 (340)
T d1tbga_          91 HAIPLRSS-WVMTCAYAPSGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQIVTSSGDTTCALW  169 (340)
T ss_dssp             EEEECSCS-CEEEEEECTTSSEEEEEETTCCEEEEESSSSCSCCCEEEEECCCSSCEEEEEEEETTEEEEEETTTEEEEE
T ss_pred             EEEecccc-cEEeeEeeccceeeeeecccceeecccccccccccccceeccccccccccccccccccccccccccccccc
Confidence            46788998 89999999999999999999999999987653222111000000000000     0000011112233333


Q ss_pred             CCCCcCcccccccccCCeEEEEEecCCCcEEEEEcCCCeEEEEEcCCCCcceEEEeeccCCceeEEEeccCCCCeEEEEc
Q 021657           77 DGPSVGPRGIYNGHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGS  156 (309)
Q Consensus        77 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~  156 (309)
                      .............+...+....+.+.+ .++++|+.|+.|++||+++++  ....+.+|...|++++|+| ++++|++|+
T Consensus       170 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~d~~v~i~d~~~~~--~~~~~~~h~~~i~~v~~~p-~~~~l~s~s  245 (340)
T d1tbga_         170 DIETGQQTTTFTGHTGDVMSLSLAPDT-RLFVSGACDASAKLWDVREGM--CRQTFTGHESDINAICFFP-NGNAFATGS  245 (340)
T ss_dssp             ETTTTEEEEEEECCSSCEEEEEECTTS-SEEEEEETTTEEEEEETTTTE--EEEEECCCSSCEEEEEECT-TSSEEEEEE
T ss_pred             ccccccccccccccceeEeeecccccc-ceeEEeecCceEEEEECCCCc--EEEEEeCCCCCeEEEEECC-CCCEEEEEe
Confidence            334444445556677888999998887 889999999999999998887  7788889999999999999 999999999


Q ss_pred             CCCcEEEEecCCCCCCCCCCceeee--ccCCCCeeEEEEecCCCcEEEEecCCCcEEEEeCCcccccccCCCCCcCCCCc
Q 021657          157 ADNSVRMFDRRNLTSNGVGSPINKF--EGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAG  234 (309)
Q Consensus       157 ~dg~i~i~d~~~~~~~~~~~~~~~~--~~~~~~v~~~~~~~~~~~l~~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~  234 (309)
                      .||.|++||++.      ...+..+  ..+...|.+++|+|++++ |++|+.||.|++||+..               ..
T Consensus       246 ~d~~i~~~~~~~------~~~~~~~~~~~~~~~i~~~~~s~~~~~-l~~g~~dg~i~iwd~~~---------------~~  303 (340)
T d1tbga_         246 DDATCRLFDLRA------DQELMTYSHDNIICGITSVSFSKSGRL-LLAGYDDFNCNVWDALK---------------AD  303 (340)
T ss_dssp             TTSCEEEEETTT------TEEEEEECCTTCCSCEEEEEECSSSCE-EEEEETTSCEEEEETTT---------------CC
T ss_pred             CCCeEEEEeecc------cccccccccccccCceEEEEECCCCCE-EEEEECCCEEEEEECCC---------------Cc
Confidence            999999999998      5655554  455677999999999996 56999999999999987               45


Q ss_pred             eeeeecCCCcceeeEEEccCCCeEEEEecCCCCCCCCCCeEEEEE
Q 021657          235 LFFQHAGHRDKVVDFHWNASDPWTVVSVSDDCDSTGGGGTLQIWR  279 (309)
Q Consensus       235 ~~~~~~~~~~~v~~~~~~~~~~~~~~s~s~d~~s~~~dg~v~vw~  279 (309)
                      ++..+.+|..+|++++|+|++.+++        ||+.||.|+|||
T Consensus       304 ~~~~~~~H~~~V~~l~~s~d~~~l~--------s~s~Dg~v~iWd  340 (340)
T d1tbga_         304 RAGVLAGHDNRVSCLGVTDDGMAVA--------TGSWDSFLKIWN  340 (340)
T ss_dssp             EEEEECCCSSCEEEEEECTTSSCEE--------EEETTSCEEEEC
T ss_pred             EEEEEcCCCCCEEEEEEeCCCCEEE--------EEccCCEEEEeC
Confidence            6778899999999999999888655        444559999997

>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Antiviral protein Ski8 (Ski8p)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=2e-35  Score=239.80  Aligned_cols=273  Identities=13%  Similarity=0.184  Sum_probs=182.5

Q ss_pred             ccCCCCCcceEEEEECCCCCEEEEecCCCcEEEEeCCccccccccCCccc---------------cccCCCCceeecCCC
Q 021657            3 ILTGHQDNAEFALAMCPTEPYVLSGGKDKSVVLWSIQDHITSSATDPATA---------------KSAGSSGSIIKQSPK   67 (309)
Q Consensus         3 ~l~~H~~~~V~~~~~~~~~~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~---------------~~~~~~~~~~~~~~~   67 (309)
                      ..+||.+ .|+++++++  ++|+|++.|++|+|||...............               ...........+...
T Consensus         9 ~~~~H~~-~I~~v~~~~--~~l~S~S~D~~iriWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~   85 (393)
T d1sq9a_           9 AGKAHDA-DIFSVSACN--SFTVSCSGDGYLKVWDNKLLDNENPKDKSYSHFVHKSGLHHVDVLQAIERDAFELCLVATT   85 (393)
T ss_dssp             ESSCSSS-CEEEEEECS--SEEEEEETTSEEEEEESBCCTTCCGGGGEEEEECCTTCEEEEEEEEEEETTTEEEEEEEEE
T ss_pred             cCCcccC-ccEEEEEeC--CEEEEEECCCeEEEEECCCCCCCcccceeEeeeeccCCceEeeeEeeeccCCCCCcEEEEE
Confidence            5689999 899999864  6999999999999999765422111110000               000111112233344


Q ss_pred             CCCCCcccCCCCCcCcccc----------cccccCCeEEEEEecCC----CcEEEEEcCCCeEEEEEcCCCCc-------
Q 021657           68 PGDGNDKAADGPSVGPRGI----------YNGHEDTVEDVTFCPSS----AQEFCSVGDDSCLILWDARVGTS-------  126 (309)
Q Consensus        68 ~~~~~~~~~~~~~~~~~~~----------~~~~~~~v~~~~~~~~~----~~~l~s~~~dg~i~iwd~~~~~~-------  126 (309)
                      ..++.+.+|+.........          ...+...+..++|.+++    ..++++++.||.+++|++.....       
T Consensus        86 ~~dg~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~vw~~~~~~~~~~~~~~  165 (393)
T d1sq9a_          86 SFSGDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWALKWGASNDRLLSHRLVATDVKGTTYIWKFHPFADESNSLTL  165 (393)
T ss_dssp             ETTSCEEEEEEEECTTTCCEEEEEECCSCTTGGGSCEEEEEEECCC----CEEEEEEETTSCEEEEEEESSSSHHHHTTT
T ss_pred             eCCCcEEEEEccCCCceeeeeccccceeeeccCCCceEEEEEecCCCcccccEEEEEcCCCcEEEEEeecCCcccceeee
Confidence            4567777776543322211          12355678888888764    26789999999999999853211       


Q ss_pred             ---c------eEEEeeccCCceeEEEeccCCCCeEEEEcCCCcEEEEecCCCCCCCCCCceee------eccCCCCeeEE
Q 021657          127 ---P------VIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINK------FEGHSAAVLCV  191 (309)
Q Consensus       127 ---~------~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~------~~~~~~~v~~~  191 (309)
                         .      .......+...+.+++|+| ++ +|++|+.||.|++||+++      ++++..      +.+|..+|+++
T Consensus       166 ~~~~~~~~~~~~~~~~~~~~~~~~v~~s~-dg-~lasgs~Dg~i~iwd~~~------~~~~~~~~~~~~l~~h~~~V~~l  237 (393)
T d1sq9a_         166 NWSPTLELQGTVESPMTPSQFATSVDISE-RG-LIATGFNNGTVQISELST------LRPLYNFESQHSMINNSNSIRSV  237 (393)
T ss_dssp             CCCCEEEEEEEECCSSSSCCCCCEEEECT-TS-EEEEECTTSEEEEEETTT------TEEEEEEECCC---CCCCCEEEE
T ss_pred             eeccceecccceecccCCCCcEEEEEECC-CC-EEEEEeCCCcEEEEeecc------cccccccccccccccccceEEEc
Confidence               0      0111223455689999999 65 899999999999999998      665544      34688999999


Q ss_pred             EEecCCCcEEEEecCCCc---EEEEeCCcccccccCCCCCcCCCCceeeeecCCCcceeeEEEccCCCeEEEEecCCCCC
Q 021657          192 QWSPDKSSVFGSSAEDGL---LNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKVVDFHWNASDPWTVVSVSDDCDS  268 (309)
Q Consensus       192 ~~~~~~~~l~~~~~~dg~---i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~s~d~~s  268 (309)
                      +|+|+++. |++|+.|++   |++||++.... ....... .........+.+|...|++++|+|++++| +       |
T Consensus       238 ~~spdg~~-l~sgs~D~t~~~i~lwd~~~g~~-~~~l~~~-~~~~~~~~~~~gH~~~V~~l~fspd~~~l-~-------S  306 (393)
T d1sq9a_         238 KFSPQGSL-LAIAHDSNSFGCITLYETEFGER-IGSLSVP-THSSQASLGEFAHSSWVMSLSFNDSGETL-C-------S  306 (393)
T ss_dssp             EECSSTTE-EEEEEEETTEEEEEEEETTTCCE-EEEECBC---------CCBSBSSCEEEEEECSSSSEE-E-------E
T ss_pred             ccccccce-eeeecCCCCcceeeeccccccee-eeeeccc-cccccceeeeecccCceeeeccCCCCCee-E-------E
Confidence            99999995 679988864   99999987322 2111100 01122334557899999999999988765 5       4


Q ss_pred             CCCCCeEEEEEccccccCChhhHhHhhhcccceEE
Q 021657          269 TGGGGTLQIWRMSDLIYRPQDEVLAELEKFKAHVI  303 (309)
Q Consensus       269 ~~~dg~v~vw~~~~~~~~~~~~~~~~~~~h~~~v~  303 (309)
                      |+.|++|+|||+.      +++++.++++|.+.|.
T Consensus       307 ~s~D~~v~vWd~~------~g~~~~~l~gH~~~v~  335 (393)
T d1sq9a_         307 AGWDGKLRFWDVK------TKERITTLNMHCDDIE  335 (393)
T ss_dssp             EETTSEEEEEETT------TTEEEEEEECCGGGCS
T ss_pred             ECCCCEEEEEECC------CCCEEEEECCcCCccc
Confidence            4555999999999      7889999999987764

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=1.6e-34  Score=230.42  Aligned_cols=260  Identities=17%  Similarity=0.217  Sum_probs=172.2

Q ss_pred             cccCCCCCcceEEEEECCCCCEEEEecCCCcEEEEeCCccccccccCC----ccccccCCCCceeecCCCCCCCCcccCC
Q 021657            2 EILTGHQDNAEFALAMCPTEPYVLSGGKDKSVVLWSIQDHITSSATDP----ATAKSAGSSGSIIKQSPKPGDGNDKAAD   77 (309)
Q Consensus         2 ~~l~~H~~~~V~~~~~~~~~~~l~t~~~dg~i~vwd~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~   77 (309)
                      .+|+||.+..|+|++|  ++++|+||+.||+|+|||+.++........    ..........   .+..+..++.+++|+
T Consensus         6 ~tL~GH~~~vitc~~~--~~~~l~tgs~Dg~i~vWd~~~~~~~~~l~~H~~~V~~l~~s~~~---~l~s~s~D~~i~iw~   80 (355)
T d1nexb2           6 TTLRGHMTSVITCLQF--EDNYVITGADDKMIRVYDSINKKFLLQLSGHDGGVWALKYAHGG---ILVSGSTDRTVRVWD   80 (355)
T ss_dssp             EEEECCSSSCEEEEEE--ETTEEEEEETTTEEEEEETTTTEEEEEEECCSSCEEEEEEETTT---EEEEEETTCCEEEEE
T ss_pred             EEECCcCCCcEEEEEE--CCCEEEEEeCCCeEEEEECCCCcEEEEEECCCCCEEEEEEcCCC---EEEEEeccccccccc
Confidence            3699999855677666  678999999999999999987643322211    1111111111   112233445555553


Q ss_pred             CCCcCccccc---ccccCCeEEEEEecCCCcEEEEEcCCCeEEEEEcCCCCc----------------------------
Q 021657           78 GPSVGPRGIY---NGHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTS----------------------------  126 (309)
Q Consensus        78 ~~~~~~~~~~---~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~----------------------------  126 (309)
                      . ........   ..+........+.+++ ..+++++.|+.|++||+.+...                            
T Consensus        81 ~-~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  158 (355)
T d1nexb2          81 I-KKGCCTHVFEGHNSTVRCLDIVEYKNI-KYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLR  158 (355)
T ss_dssp             T-TTTEEEEEECCCSSCEEEEEEEEETTE-EEEEEEETTSEEEEEECCC-----------CCCEEESCTTTCTTEEEEEE
T ss_pred             c-ccccccccccccccccccccccccccc-ceeeeecCCCcEEEEEccCCceeccccccceeccceeccccccceeeeee
Confidence            1 11111111   1112223344455555 6677777777777777654210                            


Q ss_pred             ---------------------------------ceEEEeeccCCceeEEEeccCCCCeEEEEcCCCcEEEEecCCCCCCC
Q 021657          127 ---------------------------------PVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNG  173 (309)
Q Consensus       127 ---------------------------------~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~  173 (309)
                                                       ........+...+.++.++| .+..+++++.|+.|++||+++     
T Consensus       159 ~~~~~v~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~d~~i~i~d~~~-----  232 (355)
T d1nexb2         159 GHMASVRTVSGHGNIVVSGSYDNTLIVWDVAQMKCLYILSGHTDRIYSTIYDH-ERKRCISASMDTTIRIWDLEN-----  232 (355)
T ss_dssp             CCSSCEEEEEEETTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEET-TTTEEEEEETTSCEEEEETTT-----
T ss_pred             eccccccccccccceeeeecccceeeeeecccccceeeeeccccccccccccc-cceeeecccccceEEeeeccc-----
Confidence                                             01122334556777888999 899999999999999999999     


Q ss_pred             CCCceeeeccCCCCeeEEEEecCCCcEEEEecCCCcEEEEeCCcccccccCCCCCcCCCCceeeeecCCCcceeeEEEcc
Q 021657          174 VGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKVVDFHWNA  253 (309)
Q Consensus       174 ~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~  253 (309)
                       +..+..+.+|...|.++++++  + ++++|+.||.|++||++...                 ..+..|...+..+.+.+
T Consensus       233 -~~~~~~~~~h~~~v~~~~~~~--~-~l~~~~~dg~i~iwd~~~~~-----------------~~~~~~~~~~~~~~~~~  291 (355)
T d1nexb2         233 -GELMYTLQGHTALVGLLRLSD--K-FLVSAAADGSIRGWDANDYS-----------------RKFSYHHTNLSAITTFY  291 (355)
T ss_dssp             -CCEEEEECCCSSCCCEEEECS--S-EEEEECTTSEEEEEETTTCC-----------------EEEEEECTTCCCCCEEE
T ss_pred             -ccccccccccccccccccccc--c-eeeeeecccccccccccccc-----------------eecccccCCceEEEEEc
Confidence             889999999999999999975  3 46799999999999998721                 23345666677665544


Q ss_pred             CCCeEEEEecCCCCCCCCCCeEEEEEccccccCChhhHhH-hhhcccceEEEeeeCC
Q 021657          254 SDPWTVVSVSDDCDSTGGGGTLQIWRMSDLIYRPQDEVLA-ELEKFKAHVISCTSKP  309 (309)
Q Consensus       254 ~~~~~~~s~s~d~~s~~~dg~v~vw~~~~~~~~~~~~~~~-~~~~h~~~v~~~~~~P  309 (309)
                      .++.++++++        ||.|++||++      +++++. .+.+|.++|++++|+|
T Consensus       292 ~~~~~l~~g~--------d~~i~vwd~~------tg~~~~~~~~~~~~~V~~v~~~~  334 (355)
T d1nexb2         292 VSDNILVSGS--------ENQFNIYNLR------SGKLVHANILKDADQIWSVNFKG  334 (355)
T ss_dssp             ECSSEEEEEE--------TTEEEEEETT------TCCBCCSCTTTTCSEEEEEEEET
T ss_pred             CCCCEEEEEe--------CCEEEEEECC------CCCEEEEEecCCCCCEEEEEEcC
Confidence            4556675443        3899999998      667664 5678999999999987

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=3e-34  Score=232.29  Aligned_cols=248  Identities=18%  Similarity=0.257  Sum_probs=179.5

Q ss_pred             CCCCCcceEEEEECCCCCEEEEecCCCcEEEEeCCccccccccCC----ccccccCCCCceeecCCCCCCCCcccCCCCC
Q 021657            5 TGHQDNAEFALAMCPTEPYVLSGGKDKSVVLWSIQDHITSSATDP----ATAKSAGSSGSIIKQSPKPGDGNDKAADGPS   80 (309)
Q Consensus         5 ~~H~~~~V~~~~~~~~~~~l~t~~~dg~i~vwd~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (309)
                      .+|.. .|++++|+|++++|++|+.||.|++||...+........    .........  ......+..++.+.+|+..+
T Consensus       118 ~~~~~-~V~~l~~s~~~~~l~s~~~dg~v~i~~~~~~~~~~~~~~h~~~v~~~~~~~~--~~~~~~~~~~~~i~~~d~~~  194 (388)
T d1erja_         118 PSSDL-YIRSVCFSPDGKFLATGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFPS--GDKLVSGSGDRTVRIWDLRT  194 (388)
T ss_dssp             -CCCC-BEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTT--SSEEEEEETTSEEEEEETTT
T ss_pred             cCCCC-CEEEEEECCCCCcceecccccccccccccccccccccccccccccccccccc--cccccccccceeeeeeeccc
Confidence            45777 799999999999999999999999999987643332221    111111111  11222344577888999888


Q ss_pred             cCcccccccccCCeEEEEEecCCCcEEEEEcCCCeEEEEEcCCCCcce-----EEEeeccCCceeEEEeccCCCCeEEEE
Q 021657           81 VGPRGIYNGHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPV-----IKVEKAHDADLHCVDWNPLDDNLILTG  155 (309)
Q Consensus        81 ~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~-----~~~~~~~~~~v~~~~~~~~~~~~l~~~  155 (309)
                      .........+.. ..++.+.+..+.+|++|+.||.|++||..++....     .....+|...|.+++|+| ++++|+++
T Consensus       195 ~~~~~~~~~~~~-~~~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~-~~~~l~s~  272 (388)
T d1erja_         195 GQCSLTLSIEDG-VTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTR-DGQSVVSG  272 (388)
T ss_dssp             TEEEEEEECSSC-EEEEEECSTTCCEEEEEETTSCEEEEETTTCCEEEEEC------CCCSSCEEEEEECT-TSSEEEEE
T ss_pred             cccccccccccc-cccccccCCCCCeEEEEcCCCeEEEeecccCccceeeccccccccCCCCCEEEEEECC-CCCEEEEE
Confidence            777666655554 55566666544899999999999999998876211     112346788999999999 99999999


Q ss_pred             cCCCcEEEEecCCCCCC------CCCCceeeeccCCCCeeEEEEecCCCcEEEEecCCCcEEEEeCCcccccccCCCCCc
Q 021657          156 SADNSVRMFDRRNLTSN------GVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTT  229 (309)
Q Consensus       156 ~~dg~i~i~d~~~~~~~------~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~dg~i~iwd~~~~~~~~~~~~~~~  229 (309)
                      +.||.|++||+++....      ...........|...|.+++|+|++++ |++|+.||.|++||+++            
T Consensus       273 ~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~-l~sg~~dg~i~vwd~~~------------  339 (388)
T d1erja_         273 SLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQNDEY-ILSGSKDRGVLFWDKKS------------  339 (388)
T ss_dssp             ETTSEEEEEEC---------------CEEEEEECCSSCEEEEEECGGGCE-EEEEETTSEEEEEETTT------------
T ss_pred             ECCCcEEEEeccCCccccccccccccceeeecccccceEEEEEECCCCCE-EEEEeCCCEEEEEECCC------------
Confidence            99999999999864321      012334455678889999999999996 57999999999999987            


Q ss_pred             CCCCceeeeecCCCcceeeEEE------ccCCCeEEEEecCCCCCCCCCCeEEEEEcc
Q 021657          230 NYPAGLFFQHAGHRDKVVDFHW------NASDPWTVVSVSDDCDSTGGGGTLQIWRMS  281 (309)
Q Consensus       230 ~~~~~~~~~~~~~~~~v~~~~~------~~~~~~~~~s~s~d~~s~~~dg~v~vw~~~  281 (309)
                         .+++..+.+|...|.++++      +|++. +++++|.|       |+|+||+++
T Consensus       340 ---~~~~~~l~~H~~~V~~~~~~~~~~~spd~~-~l~s~s~D-------g~I~iW~~~  386 (388)
T d1erja_         340 ---GNPLLMLQGHRNSVISVAVANGSSLGPEYN-VFATGSGD-------CKARIWKYK  386 (388)
T ss_dssp             ---CCEEEEEECCSSCEEEEEECSSCTTCTTCE-EEEEEETT-------SEEEEEEEE
T ss_pred             ---CcEEEEEeCCCCCEEEEEEecCcccCCCCC-EEEEEeCC-------CEEEEEeee
Confidence               4567788999999999986      45554 56655555       999999997

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=3e-32  Score=216.10  Aligned_cols=259  Identities=20%  Similarity=0.294  Sum_probs=175.0

Q ss_pred             cccCCCCCcceEEEEECCCCCEEEEecCCCcEEEEeCCccccccccCCcc----ccccCCCCceeecCCCCCCCCcccCC
Q 021657            2 EILTGHQDNAEFALAMCPTEPYVLSGGKDKSVVLWSIQDHITSSATDPAT----AKSAGSSGSIIKQSPKPGDGNDKAAD   77 (309)
Q Consensus         2 ~~l~~H~~~~V~~~~~~~~~~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~   77 (309)
                      ++|+||++ .|.+ +++++|++|+||+.||+|+|||+.++..........    ......    ..+..+..++.+.+|+
T Consensus        10 ~~l~GH~~-~V~s-~~~~~g~~l~sgs~Dg~i~vWd~~~~~~~~~~~~h~~~V~~v~~~~----~~l~s~s~D~~~~~~~   83 (342)
T d2ovrb2          10 KVLKGHDD-HVIT-CLQFCGNRIVSGSDDNTLKVWSAVTGKCLRTLVGHTGGVWSSQMRD----NIIISGSTDRTLKVWN   83 (342)
T ss_dssp             EEEECSTT-SCEE-EEEEETTEEEEEETTSCEEEEETTTCCEEEECCCCSSCEEEEEEET----TEEEEEETTSCEEEEE
T ss_pred             EEECCcCC-ceEE-EEEECCCEEEEEeCCCeEEEEECCCCCEEEEEeCCCCCEEEEEeCC----Cccccceecccccccc
Confidence            57999999 5544 356679999999999999999998764433222111    111111    1223344566777777


Q ss_pred             CCCcCcccccccccCCeEEEEEec--------------------------------------CCCcEEEEEcCCCeEEEE
Q 021657           78 GPSVGPRGIYNGHEDTVEDVTFCP--------------------------------------SSAQEFCSVGDDSCLILW  119 (309)
Q Consensus        78 ~~~~~~~~~~~~~~~~v~~~~~~~--------------------------------------~~~~~l~s~~~dg~i~iw  119 (309)
                      ............+...+......+                                      .. ..+++++.|+.|++|
T Consensus        84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~d~~i~~~  162 (342)
T d2ovrb2          84 AETGECIHTLYGHTSTVRCMHLHEKRVVSGSRDATLRVWDIETGQCLHVLMGHVAAVRCVQYDG-RRVVSGAYDFMVKVW  162 (342)
T ss_dssp             TTTTEEEEEECCCSSCEEEEEEETTEEEEEETTSEEEEEESSSCCEEEEEECCSSCEEEEEECS-SCEEEEETTSCEEEE
T ss_pred             cccccceecccccceeEeeeecccccccccccceeEEEeecccccceeeeecccccceeecccc-ceeeeecCCCeEEEe
Confidence            766666655444433333222211                                      11 245555666666666


Q ss_pred             EcCCCCcceEEEeeccCCceeEEEeccCCCCeEEEEcCCCcEEEEecCCCCCCCCCCceeeeccCCCCeeEEEEecCCCc
Q 021657          120 DARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWSPDKSS  199 (309)
Q Consensus       120 d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~  199 (309)
                      |....+  ....+.+|...+..+.  + ++.++++++.||.|++||++.      .+++..+..|...+.+++++++   
T Consensus       163 d~~~~~--~~~~~~~~~~~~~~~~--~-~~~~l~s~~~dg~i~~~d~~~------~~~~~~~~~~~~~v~~~~~~~~---  228 (342)
T d2ovrb2         163 DPETET--CLHTLQGHTNRVYSLQ--F-DGIHVVSGSLDTSIRVWDVET------GNCIHTLTGHQSLTSGMELKDN---  228 (342)
T ss_dssp             EGGGTE--EEEEECCCSSCEEEEE--E-CSSEEEEEETTSCEEEEETTT------CCEEEEECCCCSCEEEEEEETT---
T ss_pred             ecccce--eeEEEcCccccccccc--C-CCCEEEEEeCCCeEEEeeccc------ceeeeEecccccceeEEecCCC---
Confidence            665544  4555566665555544  4 678999999999999999998      8899999999999998888764   


Q ss_pred             EEEEecCCCcEEEEeCCcccccccCCCCCcCCCCceeeeecCCCcceeeEEEccCCCeEEEEecCCCCCCCCCCeEEEEE
Q 021657          200 VFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKVVDFHWNASDPWTVVSVSDDCDSTGGGGTLQIWR  279 (309)
Q Consensus       200 l~~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~s~d~~s~~~dg~v~vw~  279 (309)
                      ++++++.|+.|++||+......            ..+.....|...+.++.++++   ++++++.|       |.|++||
T Consensus       229 ~l~s~s~d~~i~iwd~~~~~~~------------~~~~~~~~~~~~~~~~~~~~~---~~~s~s~D-------g~i~iwd  286 (342)
T d2ovrb2         229 ILVSGNADSTVKIWDIKTGQCL------------QTLQGPNKHQSAVTCLQFNKN---FVITSSDD-------GTVKLWD  286 (342)
T ss_dssp             EEEEEETTSCEEEEETTTCCEE------------EEECSTTSCSSCEEEEEECSS---EEEEEETT-------SEEEEEE
T ss_pred             EEEEEcCCCEEEEEeccccccc------------ccccccceeeeceeecccCCC---eeEEEcCC-------CEEEEEE
Confidence            5779999999999999873221            123334456777888888753   56655555       9999999


Q ss_pred             ccccccCChhhHhHhh-----hcccceEEEeeeCC
Q 021657          280 MSDLIYRPQDEVLAEL-----EKFKAHVISCTSKP  309 (309)
Q Consensus       280 ~~~~~~~~~~~~~~~~-----~~h~~~v~~~~~~P  309 (309)
                      ++      ++++++++     .+|.+.|++++|+|
T Consensus       287 ~~------tg~~i~~~~~~~~~~~~~~v~~v~~s~  315 (342)
T d2ovrb2         287 LK------TGEFIRNLVTLESGGSGGVVWRIRASN  315 (342)
T ss_dssp             TT------TCCEEEEEEECTTGGGTCEEEEEEECS
T ss_pred             CC------CCCEEEEEecccCCCCCCCEEEEEECC
Confidence            98      56666554     46888999999987

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=2.3e-32  Score=216.54  Aligned_cols=250  Identities=11%  Similarity=0.127  Sum_probs=165.3

Q ss_pred             CcccCCCCCcceEEEEECCCCCEEEEecCCCcEEEEeCCccccccccCCccccccCCCCceeecCCCCCCCCcccCCCCC
Q 021657            1 MEILTGHQDNAEFALAMCPTEPYVLSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPS   80 (309)
Q Consensus         1 l~~l~~H~~~~V~~~~~~~~~~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (309)
                      |+.+++|++ .|++|+|+|++++||+|+.||+|+|||++....                                     
T Consensus         4 v~~~~~h~d-~I~~l~fsp~~~~L~s~s~Dg~v~iwd~~~~~~-------------------------------------   45 (342)
T d1yfqa_           4 VQIEQAPKD-YISDIKIIPSKSLLLITSWDGSLTVYKFDIQAK-------------------------------------   45 (342)
T ss_dssp             EECSSCCSS-CEEEEEEEGGGTEEEEEETTSEEEEEEEETTTT-------------------------------------
T ss_pred             EEcCCCCCC-CEEEEEEeCCCCEEEEEECCCeEEEEEccCCCc-------------------------------------
Confidence            467899999 899999999999999999999999999874311                                     


Q ss_pred             cCcccccccccCCeEEEEEecCCCcEEEEEcCCCeEEEEEcCCCCcceEEEeeccCC-----------------------
Q 021657           81 VGPRGIYNGHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPVIKVEKAHDA-----------------------  137 (309)
Q Consensus        81 ~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~-----------------------  137 (309)
                      ...+....+|..+|.+++|+|+++.+|++|+.||.|++|++.....  ......+..                       
T Consensus        46 ~~~~~~~~~h~~~V~~v~f~~~~~~~l~sg~~d~~v~~w~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  123 (342)
T d1yfqa_          46 NVDLLQSLRYKHPLLCCNFIDNTDLQIYVGTVQGEILKVDLIGSPS--FQALTNNEANLGICRICKYGDDKLIAASWDGL  123 (342)
T ss_dssp             EEEEEEEEECSSCEEEEEEEESSSEEEEEEETTSCEEEECSSSSSS--EEECBSCCCCSCEEEEEEETTTEEEEEETTSE
T ss_pred             ceEEEEecCCCCCEEEEEEeCCCCCEEEEcccccceeeeecccccc--cccccccccccccccccccccccccccccccc
Confidence            1112233469999999999998768999999999999999876542  111111111                       


Q ss_pred             --------------------------ceeEEEeccCCCCeEEEEcCCCcEEEEecCCCCCCCCCCceeeeccCCCCeeEE
Q 021657          138 --------------------------DLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGHSAAVLCV  191 (309)
Q Consensus       138 --------------------------~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~v~~~  191 (309)
                                                ....+.+.+ .+..+++++.|+.|++||++....   .............+.+.
T Consensus       124 ~~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~d~~i~~~~~~~~~~---~~~~~~~~~~~~~~~~~  199 (342)
T d1yfqa_         124 IEVIDPRNYGDGVIAVKNLNSNNTKVKNKIFTMDT-NSSRLIVGMNNSQVQWFRLPLCED---DNGTIEESGLKYQIRDV  199 (342)
T ss_dssp             EEEECHHHHTTBCEEEEESCSSSSSSCCCEEEEEE-CSSEEEEEESTTEEEEEESSCCTT---CCCEEEECSCSSCEEEE
T ss_pred             cceeeccccccceeeecccccccccceeeeeeeec-cCCceeeecCCCcEEEEecccCcc---cceeeeecccccceeee
Confidence                                      112223344 455666666666666666665221   11112222334456666


Q ss_pred             EEecCCCcEEEEecCCCcEEEEeCCcccccccCCCCCcCCCCceeeeecCCCcceeeEEEccCCCeEEEEecCCCCCCCC
Q 021657          192 QWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKVVDFHWNASDPWTVVSVSDDCDSTGG  271 (309)
Q Consensus       192 ~~~~~~~~l~~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~s~d~~s~~~  271 (309)
                      .+.+.....+++++.||.+.+|++.........................+|...|++++|+|++++|+        ||+.
T Consensus       200 ~~~~~~~~~~~~~s~dg~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~la--------sg~~  271 (342)
T d1yfqa_         200 ALLPKEQEGYACSSIDGRVAVEFFDDQGDDYNSSKRFAFRCHRLNLKDTNLAYPVNSIEFSPRHKFLY--------TAGS  271 (342)
T ss_dssp             EECSGGGCEEEEEETTSEEEEEECCTTCCSTTCTTCEEEECCCCCTTCCSSCCCEEEEEECTTTCCEE--------EEET
T ss_pred             EeecCCCCEEEeecCCCeEEEEEecCCcceeeccccceeeeeeeccCCCcccccceeEEecCCccEEE--------EECC
Confidence            66665544678999999999999877443332211111111112233456777899999999888655        5555


Q ss_pred             CCeEEEEEccccccCChhhHhHhhh-cccceEEEeeeC
Q 021657          272 GGTLQIWRMSDLIYRPQDEVLAELE-KFKAHVISCTSK  308 (309)
Q Consensus       272 dg~v~vw~~~~~~~~~~~~~~~~~~-~h~~~v~~~~~~  308 (309)
                      ||.|++||+.      +.+++.++. .|...+.+++++
T Consensus       272 Dg~v~vWD~~------~~~~l~~~~~~~~~~~~~~s~~  303 (342)
T d1yfqa_         272 DGIISCWNLQ------TRKKIKNFAKFNEDSVVKIACS  303 (342)
T ss_dssp             TSCEEEEETT------TTEEEEECCCCSSSEEEEEEEC
T ss_pred             CCEEEEEECC------CCcEEEEecCCCCCEEEEEEeC
Confidence            5999999999      677777775 355667776654

>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=5.8e-32  Score=210.01  Aligned_cols=239  Identities=12%  Similarity=0.209  Sum_probs=159.8

Q ss_pred             CcccCCCCCcceEEEEECCCCCEEEEecCCCcEEEEeCCccccccccCCccccccCCCCcee---------ecCC-----
Q 021657            1 MEILTGHQDNAEFALAMCPTEPYVLSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSII---------KQSP-----   66 (309)
Q Consensus         1 l~~l~~H~~~~V~~~~~~~~~~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~-----   66 (309)
                      +++|+||.+ +|++++|+|    |+||+.||+|++||+.+........ ...........+.         ....     
T Consensus         6 i~~l~gH~~-~I~~l~~s~----l~sgs~Dg~v~~Wd~~~~~~~h~~~-V~~~~~~~~~~~~s~s~D~~v~~w~~~~~~~   79 (287)
T d1pgua2           6 LKTISGHNK-GITALTVNP----LISGSYDGRIMEWSSSSMHQDHSNL-IVSLDNSKAQEYSSISWDDTLKVNGITKHEF   79 (287)
T ss_dssp             EEEECCCSS-CEEEEETTT----TEEEETTSCEEETTTTEEECCCCSC-EEEEECCSTTCCEEEETTTEEEETTEEEEEC
T ss_pred             eEEECCCCC-ceEEEEECc----EEEEeCCCeEEEEECCCCCCCCCCC-EEEEEecCCCeEEEEeecccccccccccccc
Confidence            478999999 899999987    9999999999999998653221110 0000000000000         0000     


Q ss_pred             -----------------CCCCCCcccCCCCCcCcccccccccCCeEEEEEecCCCcEEEEEcCC-CeEEEEEcCCCCcce
Q 021657           67 -----------------KPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQEFCSVGDD-SCLILWDARVGTSPV  128 (309)
Q Consensus        67 -----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d-g~i~iwd~~~~~~~~  128 (309)
                                       ......+.+|+..+.+.+..+.. ...  ..++++++ ..+++++.+ +.+++|++...+. .
T Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~--~~~~~~~~-~~~~v~~~~~~~v~~~~~~~~~~-~  154 (287)
T d1pgua2          80 GSQPKVASANNDGFTAVLTNDDDLLILQSFTGDIIKSVRL-NSP--GSAVSLSQ-NYVAVGLEEGNTIQVFKLSDLEV-S  154 (287)
T ss_dssp             SSCEEEEEECSSSEEEEEETTSEEEEEETTTCCEEEEEEC-SSC--EEEEEECS-SEEEEEETTTSCEEEEETTEEEE-E
T ss_pred             ccceeeeeeccCCceEEEeecccceeeeccceeeeeeccc-cce--eeeeeccC-cceeeeccccceeeeeeccccce-e
Confidence                             00112233333333333333332 222  34566776 445555554 5799999865541 2


Q ss_pred             EEEeeccCCceeEEEeccCCCCeEEEEcCCCcEEEEecCCCCCCCCCCce-eeeccCCCCeeEEEEecCCC---------
Q 021657          129 IKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPI-NKFEGHSAAVLCVQWSPDKS---------  198 (309)
Q Consensus       129 ~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~-~~~~~~~~~v~~~~~~~~~~---------  198 (309)
                      ......+...+++++|+| ++.+|++|+.||.|++||+.+      +..+ ..+..|...|++++|+|.+.         
T Consensus       155 ~~~~~~~~~~v~~~~~s~-~~~~l~~g~~dg~i~i~d~~~------~~~~~~~~~~h~~~v~~~~~~p~~~~~~~~~~~~  227 (287)
T d1pgua2         155 FDLKTPLRAKPSYISISP-SETYIAAGDVMGKILLYDLQS------REVKTSRWAFRTSKINAISWKPAEKGANEEEIEE  227 (287)
T ss_dssp             EECSSCCSSCEEEEEECT-TSSEEEEEETTSCEEEEETTT------TEEEECCSCCCSSCEEEEEECCCC------CCSC
T ss_pred             eeeeeccCCceeEEEecc-Cccccccccccccccceeecc------cccccccccccccccceeeecccccccccccCCC
Confidence            223345778899999999 999999999999999999988      5544 34678899999999998542         


Q ss_pred             cEEEEecCCCcEEEEeCCcccccccCCCCCcCCCCceeeeecCCCcceeeEEEccCCCeEEEEecCCCCCCCCCCeEEEE
Q 021657          199 SVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKVVDFHWNASDPWTVVSVSDDCDSTGGGGTLQIW  278 (309)
Q Consensus       199 ~l~~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~s~d~~s~~~dg~v~vw  278 (309)
                      .++++|+.|+.|++||++...              ..+..+.+|...|++++|+|++ .+ +++|       .|+.|++|
T Consensus       228 ~~l~sgs~D~~i~iw~~~~~~--------------~~~~~~~~h~~~V~~v~~~~~~-~l-~s~g-------~D~~v~iW  284 (287)
T d1pgua2         228 DLVATGSLDTNIFIYSVKRPM--------------KIIKALNAHKDGVNNLLWETPS-TL-VSSG-------ADACIKRW  284 (287)
T ss_dssp             CEEEEEETTSCEEEEESSCTT--------------CCEEETTSSTTCEEEEEEEETT-EE-EEEE-------TTSCEEEE
T ss_pred             CeeEeecCCCeEEEEECCCCC--------------eEEEEeCCCCCCeEEEEECCCC-EE-EEEE-------CCCeEEEE
Confidence            257899999999999997622              2455667899999999999965 44 4444       45999999


Q ss_pred             Ec
Q 021657          279 RM  280 (309)
Q Consensus       279 ~~  280 (309)
                      ++
T Consensus       285 ~i  286 (287)
T d1pgua2         285 NV  286 (287)
T ss_dssp             EE
T ss_pred             EE
Confidence            96

>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.97  E-value=7.3e-31  Score=207.34  Aligned_cols=227  Identities=17%  Similarity=0.195  Sum_probs=174.6

Q ss_pred             ceEEEEECCCCCEEEEecCCC-cEEEEeCCccccccccCCccccccCCCCceeecCCCCCCCCcccCCCCCcCccccccc
Q 021657           11 AEFALAMCPTEPYVLSGGKDK-SVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNG   89 (309)
Q Consensus        11 ~V~~~~~~~~~~~l~t~~~dg-~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   89 (309)
                      .+++++|+|+++.|+.++.+. .|+.|+....                                      .......+.+
T Consensus        19 ~~t~l~~~~~~~~la~~~~~~~~i~~~~~~~~--------------------------------------~~~~~~~~~g   60 (325)
T d1pgua1          19 FTTHLSYDPTTNAIAYPCGKSAFVRCLDDGDS--------------------------------------KVPPVVQFTG   60 (325)
T ss_dssp             CCCCCEEETTTTEEEEEETTEEEEEECCSSCC--------------------------------------SSCSEEEECT
T ss_pred             CeEEEEECCCCCEEEEEeCCCEEEEEEeCCCC--------------------------------------CccceEEEeC
Confidence            456899999999999876554 3566664321                                      2223445566


Q ss_pred             c-cCCeEEEEEecCC-CcEEEEEcCCCeEEEEEcCCCCcc------eEEEeeccCCceeEEEeccCCCCeEEEEcC--CC
Q 021657           90 H-EDTVEDVTFCPSS-AQEFCSVGDDSCLILWDARVGTSP------VIKVEKAHDADLHCVDWNPLDDNLILTGSA--DN  159 (309)
Q Consensus        90 ~-~~~v~~~~~~~~~-~~~l~s~~~dg~i~iwd~~~~~~~------~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~--dg  159 (309)
                      | ...|++++|+|+. ..+|++|+.||+|+|||+..++..      .......|..+|.+++|++ ++.++++++.  ++
T Consensus        61 h~~~~v~~v~fsP~~~g~~lasgs~Dg~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~-~~~~l~~~~~~~~~  139 (325)
T d1pgua1          61 HGSSVVTTVKFSPIKGSQYLCSGDESGKVIVWGWTFDKESNSVEVNVKSEFQVLAGPISDISWDF-EGRRLCVVGEGRDN  139 (325)
T ss_dssp             TTTSCEEEEEECSSTTCCEEEEEETTSEEEEEEEEEEGGGTEEEEEEEEEEECCSSCEEEEEECT-TSSEEEEEECCSSC
T ss_pred             CCCCCEEEEEEeeCCCCCEEEEEeCCCCEEEeeecCCcceeeeecccccccccccCcEEEEEECC-CCCccceeeccccc
Confidence            6 4689999999842 378999999999999998765421      1223456888999999999 8888877654  67


Q ss_pred             cEEEEecCCCCCCCCCCceeeeccCCCCeeEEEEecCCCcEEEEecCCCcEEEEeCCcccccccCCCCCcCCCCceeeee
Q 021657          160 SVRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQH  239 (309)
Q Consensus       160 ~i~i~d~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~  239 (309)
                      .+++|+..+      ++.+..+.+|...|++++|+|++++++++++.|+.+++||++.....            ......
T Consensus       140 ~~~~~~~~~------~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~d~~v~~~d~~~~~~~------------~~~~~~  201 (325)
T d1pgua1         140 FGVFISWDS------GNSLGEVSGHSQRINACHLKQSRPMRSMTVGDDGSVVFYQGPPFKFS------------ASDRTH  201 (325)
T ss_dssp             SEEEEETTT------CCEEEECCSCSSCEEEEEECSSSSCEEEEEETTTEEEEEETTTBEEE------------EEECSS
T ss_pred             eEEEEeecc------cccceeeeecccccccccccccccceEEEeecccccccccccccccc------------eecccc
Confidence            899999998      88999999999999999999999887788999999999998763221            123345


Q ss_pred             cCCCcceeeEEEccCCCeEEEEecCCCCCCCCCCeEEEEEccccccCChhhHhHhhhcccceEEEeee
Q 021657          240 AGHRDKVVDFHWNASDPWTVVSVSDDCDSTGGGGTLQIWRMSDLIYRPQDEVLAELEKFKAHVISCTS  307 (309)
Q Consensus       240 ~~~~~~v~~~~~~~~~~~~~~s~s~d~~s~~~dg~v~vw~~~~~~~~~~~~~~~~~~~h~~~v~~~~~  307 (309)
                      ..|...|.+++|+|++..++++++.|       +.|++||++      +++++.++++|..++.++.|
T Consensus       202 ~~~~~~v~~v~~~pd~~~~l~s~~~d-------~~i~iwd~~------~~~~~~~l~~~~~~v~~~~~  256 (325)
T d1pgua1         202 HKQGSFVRDVEFSPDSGEFVITVGSD-------RKISCFDGK------SGEFLKYIEDDQEPVQGGIF  256 (325)
T ss_dssp             SCTTCCEEEEEECSTTCCEEEEEETT-------CCEEEEETT------TCCEEEECCBTTBCCCSCEE
T ss_pred             cCCCCccEEeeeccccceeccccccc-------cceeeeeec------ccccccccccccccccccee
Confidence            67888999999999877777766655       999999998      67778888888776644443

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=99.97  E-value=2.5e-30  Score=201.89  Aligned_cols=240  Identities=15%  Similarity=0.200  Sum_probs=161.6

Q ss_pred             CCCCCcceEEEEECCCCCEEEEecCCCcEEEEeCCccccccccCCc-------cccccCCCCceeecCCCCCCCCcccCC
Q 021657            5 TGHQDNAEFALAMCPTEPYVLSGGKDKSVVLWSIQDHITSSATDPA-------TAKSAGSSGSIIKQSPKPGDGNDKAAD   77 (309)
Q Consensus         5 ~~H~~~~V~~~~~~~~~~~l~t~~~dg~i~vwd~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~   77 (309)
                      .+|.. .|++++|+|++. +++++.|+.+++|+.............       ..............   .....+.+|+
T Consensus        52 ~~h~~-~v~~v~~~~~g~-~~~~~~d~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~~~---~~~~~i~~~~  126 (299)
T d1nr0a2          52 DVHAT-MITGIKTTSKGD-LFTVSWDDHLKVVPAGGSGVDSSKAVANKLSSQPLGLAVSADGDIAVA---ACYKHIAIYS  126 (299)
T ss_dssp             CSCSS-CEEEEEECTTSC-EEEEETTTEEEEECSSSSSSCTTSCCEEECSSCEEEEEECTTSSCEEE---EESSEEEEEE
T ss_pred             CCCCC-cEEEEEeeccce-eecccceeeEEEeccCCccccccccccccccccccccccccccccccc---cccccccccc
Confidence            46887 899999999997 456677999999998754221111000       00001111111110   1123445554


Q ss_pred             CCCcCcccccccccCCeEEEEEecCCCcEEEEEcCCCeEEEEEcCCCCcceEEEeeccCCceeEEEeccCCCCeEEEEcC
Q 021657           78 GPSVGPRGIYNGHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSA  157 (309)
Q Consensus        78 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~  157 (309)
                      ....  ...  .....+.+++|+|++ .+|++|+.||.|++||+++++. .......|...|++++|+| ++.+|++++.
T Consensus       127 ~~~~--~~~--~~~~~~~~~~~s~~~-~~l~~g~~dg~i~~~d~~~~~~-~~~~~~~~~~~i~~~~~~~-~~~~l~~~~~  199 (299)
T d1nr0a2         127 HGKL--TEV--PISYNSSCVALSNDK-QFVAVGGQDSKVHVYKLSGASV-SEVKTIVHPAEITSVAFSN-NGAFLVATDQ  199 (299)
T ss_dssp             TTEE--EEE--ECSSCEEEEEECTTS-CEEEEEETTSEEEEEEEETTEE-EEEEEEECSSCEEEEEECT-TSSEEEEEET
T ss_pred             cccc--ccc--ccccccccccccccc-cccccccccccccccccccccc-ccccccccccccccccccc-cccccccccc
Confidence            3221  111  234567899999998 8899999999999999987662 2234457889999999999 9999999999


Q ss_pred             CCcEEEEecCCCCCCCCCCceeeeccCCCCeeEEEEecCCCcEEEEecCCCcEEEEeCCcccccccCCCCCcCCCCceee
Q 021657          158 DNSVRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFF  237 (309)
Q Consensus       158 dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~  237 (309)
                      |+.|++||+.+...   ......+..|...|++++|+|++++ |++|+.||.|++||++.....            ....
T Consensus       200 d~~i~~~~~~~~~~---~~~~~~~~~h~~~v~~l~~s~~~~~-l~sgs~dg~i~iwd~~~~~~~------------~~~~  263 (299)
T d1nr0a2         200 SRKVIPYSVANNFE---LAHTNSWTFHTAKVACVSWSPDNVR-LATGSLDNSVIVWNMNKPSDH------------PIII  263 (299)
T ss_dssp             TSCEEEEEGGGTTE---ESCCCCCCCCSSCEEEEEECTTSSE-EEEEETTSCEEEEETTCTTSC------------CEEE
T ss_pred             cccccccccccccc---ccccccccccccccccccccccccc-eEEEcCCCEEEEEECCCCCcc------------eEEE
Confidence            99999999987211   1233456678899999999999995 679999999999999873221            1122


Q ss_pred             eecCCCcceeeEEEccCCCeEEEEecCCCCCCCCCCeEEEEEcc
Q 021657          238 QHAGHRDKVVDFHWNASDPWTVVSVSDDCDSTGGGGTLQIWRMS  281 (309)
Q Consensus       238 ~~~~~~~~v~~~~~~~~~~~~~~s~s~d~~s~~~dg~v~vw~~~  281 (309)
                      ....+...+..+.|.+ +.+++ ++|       .|+.|++||+.
T Consensus       264 ~~~~~~~~v~~~~~~~-~~~l~-s~s-------~D~~i~iWdl~  298 (299)
T d1nr0a2         264 KGAHAMSSVNSVIWLN-ETTIV-SAG-------QDSNIKFWNVP  298 (299)
T ss_dssp             TTSSTTSCEEEEEEEE-TTEEE-EEE-------TTSCEEEEECC
T ss_pred             ecCCCCCcEEEEEECC-CCEEE-EEe-------CCCEEEEEecc
Confidence            2233445677776654 66554 444       45999999985

>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.97  E-value=2.9e-30  Score=200.13  Aligned_cols=225  Identities=19%  Similarity=0.400  Sum_probs=158.6

Q ss_pred             cccCCCCCcceEEEEECCCCCEEEEecCCCcEEEEeCCccccccccCCccccccCCCCceeecCCCCCCCCcccCCCCCc
Q 021657            2 EILTGHQDNAEFALAMCPTEPYVLSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSV   81 (309)
Q Consensus         2 ~~l~~H~~~~V~~~~~~~~~~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (309)
                      +.+.+|.. .|+|++|  ++++|+||+.||+|+|||++++                                        
T Consensus         9 ~~~~~~~~-~V~c~~~--d~~~l~sgs~Dg~i~vWd~~~~----------------------------------------   45 (293)
T d1p22a2           9 HCRSETSK-GVYCLQY--DDQKIVSGLRDNTIKIWDKNTL----------------------------------------   45 (293)
T ss_dssp             ECCCSSCC-CEEEEEC--CSSEEEEEESSSCEEEEESSSC----------------------------------------
T ss_pred             eccCCCCC-CEEEEEE--cCCEEEEEeCCCeEEEEECCCC----------------------------------------
Confidence            34567777 7888765  7999999999999999999754                                        


Q ss_pred             CcccccccccCCeEEEEEecCCCcEEEEEcCCCeEEEEEcCCCC------------------------------------
Q 021657           82 GPRGIYNGHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGT------------------------------------  125 (309)
Q Consensus        82 ~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~------------------------------------  125 (309)
                      +++..+.+|...|++++|  ++ ++|++|+.|+.|++|++..+.                                    
T Consensus        46 ~~~~~l~~H~~~V~~v~~--~~-~~l~s~s~D~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  122 (293)
T d1p22a2          46 ECKRILTGHTGSVLCLQY--DE-RVIITGSSDSTVRVWDVNTGEMLNTLIHHCEAVLHLRFNNGMMVTCSKDRSIAVWDM  122 (293)
T ss_dssp             CEEEEECCCSSCEEEEEC--CS-SEEEEEETTSCEEEEESSSCCEEEEECCCCSCEEEEECCTTEEEEEETTSCEEEEEC
T ss_pred             cEEEEEecCCCCEeeeec--cc-ceeecccccccccccccccccccccccccccccccccccccceeecccccceeEeec
Confidence            334455556666665554  22 456666666666666654432                                    


Q ss_pred             ----c-ceEEEeeccCCceeEEEeccCCCCeEEEEcCCCcEEEEecCCCCCCCCCCceeeeccCCCCeeEEEEecCCCcE
Q 021657          126 ----S-PVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWSPDKSSV  200 (309)
Q Consensus       126 ----~-~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l  200 (309)
                          . ........|...+..+.+.   ...+++++.|+.|++||+++      .+.+..+.++...+..+.+++  . .
T Consensus       123 ~~~~~~~~~~~~~~~~~~v~~~~~~---~~~~~~~s~d~~i~~~d~~~------~~~~~~~~~~~~~v~~~~~~~--~-~  190 (293)
T d1p22a2         123 ASPTDITLRRVLVGHRAAVNVVDFD---DKYIVSASGDRTIKVWNTST------CEFVRTLNGHKRGIACLQYRD--R-L  190 (293)
T ss_dssp             SSSSCCEEEEEECCCSSCEEEEEEE---TTEEEEEETTSEEEEEETTT------CCEEEEEECCSSCEEEEEEET--T-E
T ss_pred             cccccccccccccccccccccceec---ccccccccCCCceeeecCCC------CcEEEEEcccccccccccCCC--C-e
Confidence                1 1122334556666666654   46788899999999999999      888999999888888887764  4 4


Q ss_pred             EEEecCCCcEEEEeCCcccccccCCCCCcCCCCceeeeecCCCcceeeEEEccCCCeEEEEecCCCCCCCCCCeEEEEEc
Q 021657          201 FGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKVVDFHWNASDPWTVVSVSDDCDSTGGGGTLQIWRM  280 (309)
Q Consensus       201 ~~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~s~d~~s~~~dg~v~vw~~  280 (309)
                      +++++.||.|++||++.               ...+....+|...+..+.+  ++.+ +++++       .||.|++||+
T Consensus       191 l~~~~~dg~i~i~d~~~---------------~~~~~~~~~~~~~v~~~~~--~~~~-l~sg~-------~dg~i~iwd~  245 (293)
T d1p22a2         191 VVSGSSDNTIRLWDIEC---------------GACLRVLEGHEELVRCIRF--DNKR-IVSGA-------YDGKIKVWDL  245 (293)
T ss_dssp             EEEEETTSCEEEEETTT---------------CCEEEEECCCSSCEEEEEC--CSSE-EEEEE-------TTSCEEEEEH
T ss_pred             EEEecCCCEEEEEeccc---------------ceeeeeecccceeeeeccc--cceE-EEEEc-------CCCEEEEEEC
Confidence            67999999999999987               3455667778877776544  3444 55444       4599999998


Q ss_pred             ccccc---CChhhHhHhhhcccceEEEeeeCC
Q 021657          281 SDLIY---RPQDEVLAELEKFKAHVISCTSKP  309 (309)
Q Consensus       281 ~~~~~---~~~~~~~~~~~~h~~~v~~~~~~P  309 (309)
                      .....   .....++..+.+|.+.|++++|+|
T Consensus       246 ~~~~~~~~~~~~~~~~~~~~H~~~V~~v~~d~  277 (293)
T d1p22a2         246 VAALDPRAPAGTLCLRTLVEHSGRVFRLQFDE  277 (293)
T ss_dssp             HHHTSTTSCTTTTEEEEECCCSSCCCCEEECS
T ss_pred             CCCccccccCCceeeEEecCCCCCEEEEEEcC
Confidence            74221   112345667889999999999875

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.97  E-value=2e-29  Score=200.67  Aligned_cols=238  Identities=18%  Similarity=0.284  Sum_probs=172.9

Q ss_pred             cccCCCCCcceEEEEECCCCCEEEEecCCCcEEEEeCCccccccccCCcc----------------ccccCCCCcee---
Q 021657            2 EILTGHQDNAEFALAMCPTEPYVLSGGKDKSVVLWSIQDHITSSATDPAT----------------AKSAGSSGSII---   62 (309)
Q Consensus         2 ~~l~~H~~~~V~~~~~~~~~~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~----------------~~~~~~~~~~~---   62 (309)
                      ++|++|.+ +|++++|+|+ .+|++|+.||+|++|++.............                .........+.   
T Consensus        47 ~~l~~H~~-~V~~l~~s~~-~~l~s~s~D~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~iw~  124 (355)
T d1nexb2          47 LQLSGHDG-GVWALKYAHG-GILVSGSTDRTVRVWDIKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWK  124 (355)
T ss_dssp             EEEECCSS-CEEEEEEETT-TEEEEEETTCCEEEEETTTTEEEEEECCCSSCEEEEEEEEETTEEEEEEEETTSEEEEEE
T ss_pred             EEEECCCC-CEEEEEEcCC-CEEEEEecccccccccccccccccccccccccccccccccccccceeeeecCCCcEEEEE
Confidence            57889999 8999999985 589999999999999988652111100000                00000000000   


Q ss_pred             ------------------------------------------------ecCCCCCCCCcccCCCCCcCcccccccccCCe
Q 021657           63 ------------------------------------------------KQSPKPGDGNDKAADGPSVGPRGIYNGHEDTV   94 (309)
Q Consensus        63 ------------------------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v   94 (309)
                                                                      ....+..+..+.+|+..+.+.+....++...+
T Consensus       125 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~  204 (355)
T d1nexb2         125 LPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMASVRTVSGHGNIVVSGSYDNTLIVWDVAQMKCLYILSGHTDRI  204 (355)
T ss_dssp             CCC-----------CCCEEESCTTTCTTEEEEEECCSSCEEEEEEETTEEEEEETTSCEEEEETTTTEEEEEECCCSSCE
T ss_pred             ccCCceeccccccceeccceeccccccceeeeeeeccccccccccccceeeeecccceeeeeecccccceeeeecccccc
Confidence                                                            00111234567777777777777788888999


Q ss_pred             EEEEEecCCCcEEEEEcCCCeEEEEEcCCCCcceEEEeeccCCceeEEEeccCCCCeEEEEcCCCcEEEEecCCCCCCCC
Q 021657           95 EDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGV  174 (309)
Q Consensus        95 ~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~  174 (309)
                      .++.|+|++ ..+++++.|+.|++||++++.  ....+.+|...|.++++++   ++|++|+.||.|++||+++      
T Consensus       205 ~~~~~~~~~-~~~~~~~~d~~i~i~d~~~~~--~~~~~~~h~~~v~~~~~~~---~~l~~~~~dg~i~iwd~~~------  272 (355)
T d1nexb2         205 YSTIYDHER-KRCISASMDTTIRIWDLENGE--LMYTLQGHTALVGLLRLSD---KFLVSAAADGSIRGWDAND------  272 (355)
T ss_dssp             EEEEEETTT-TEEEEEETTSCEEEEETTTCC--EEEEECCCSSCCCEEEECS---SEEEEECTTSEEEEEETTT------
T ss_pred             ccccccccc-eeeecccccceEEeeeccccc--ccccccccccccccccccc---ceeeeeecccccccccccc------
Confidence            999999998 789999999999999999888  7788889999999999864   7999999999999999987      


Q ss_pred             CCceeeeccCCCCeeEEE-EecCCCcEEEEecCCCcEEEEeCCcccccccCCCCCcCCCCcee-eeecCCCcceeeEEEc
Q 021657          175 GSPINKFEGHSAAVLCVQ-WSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLF-FQHAGHRDKVVDFHWN  252 (309)
Q Consensus       175 ~~~~~~~~~~~~~v~~~~-~~~~~~~l~~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~v~~~~~~  252 (309)
                      ....  +..|...+.++. +++++. ++++| .|+.|++||+++ ++              ++ ..+.+|..+|.+++|+
T Consensus       273 ~~~~--~~~~~~~~~~~~~~~~~~~-~l~~g-~d~~i~vwd~~t-g~--------------~~~~~~~~~~~~V~~v~~~  333 (355)
T d1nexb2         273 YSRK--FSYHHTNLSAITTFYVSDN-ILVSG-SENQFNIYNLRS-GK--------------LVHANILKDADQIWSVNFK  333 (355)
T ss_dssp             CCEE--EEEECTTCCCCCEEEECSS-EEEEE-ETTEEEEEETTT-CC--------------BCCSCTTTTCSEEEEEEEE
T ss_pred             ccee--cccccCCceEEEEEcCCCC-EEEEE-eCCEEEEEECCC-CC--------------EEEEEecCCCCCEEEEEEc
Confidence            4443  444555666554 556665 56555 489999999987 22              22 2356789999999999


Q ss_pred             cCCCeEEEEecCCCCCCCCCCeEEEEEcc
Q 021657          253 ASDPWTVVSVSDDCDSTGGGGTLQIWRMS  281 (309)
Q Consensus       253 ~~~~~~~~s~s~d~~s~~~dg~v~vw~~~  281 (309)
                      |+  .++++++.|       |.++||.+.
T Consensus       334 ~~--~~~~~~s~d-------g~~~l~~~d  353 (355)
T d1nexb2         334 GK--TLVAAVEKD-------GQSFLEILD  353 (355)
T ss_dssp             TT--EEEEEEESS-------SCEEEEEEE
T ss_pred             CC--eEEEEEECC-------CcEEEEEEe
Confidence            74  577767766       987776553

>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.97  E-value=1.8e-29  Score=195.69  Aligned_cols=242  Identities=22%  Similarity=0.356  Sum_probs=175.0

Q ss_pred             cccCCCCCcceEEEEECCCCCEEEEecCCCcEEEEeCCccccccccCCccccccCCCCceeecCCCCCCCCcccCCCCCc
Q 021657            2 EILTGHQDNAEFALAMCPTEPYVLSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSV   81 (309)
Q Consensus         2 ~~l~~H~~~~V~~~~~~~~~~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (309)
                      ++|++|.+ .|++++|  ++++|++|+.||.|++|++..+.............................+.+.+|+....
T Consensus        49 ~~l~~H~~-~V~~v~~--~~~~l~s~s~D~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  125 (293)
T d1p22a2          49 RILTGHTG-SVLCLQY--DERVIITGSSDSTVRVWDVNTGEMLNTLIHHCEAVLHLRFNNGMMVTCSKDRSIAVWDMASP  125 (293)
T ss_dssp             EEECCCSS-CEEEEEC--CSSEEEEEETTSCEEEEESSSCCEEEEECCCCSCEEEEECCTTEEEEEETTSCEEEEECSSS
T ss_pred             EEEecCCC-CEeeeec--ccceeecccccccccccccccccccccccccccccccccccccceeecccccceeEeecccc
Confidence            57899999 8999887  67899999999999999998774333222211111110001111122234455666665554


Q ss_pred             Cc---ccccccccCCeEEEEEecCCCcEEEEEcCCCeEEEEEcCCCCcceEEEeeccCCceeEEEeccCCCCeEEEEcCC
Q 021657           82 GP---RGIYNGHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSAD  158 (309)
Q Consensus        82 ~~---~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d  158 (309)
                      ..   ...+..|...|..+.+.+   ..+++++.|+.|++||+++++  ....+.++...+..+.++   +..+++++.|
T Consensus       126 ~~~~~~~~~~~~~~~v~~~~~~~---~~~~~~s~d~~i~~~d~~~~~--~~~~~~~~~~~v~~~~~~---~~~l~~~~~d  197 (293)
T d1p22a2         126 TDITLRRVLVGHRAAVNVVDFDD---KYIVSASGDRTIKVWNTSTCE--FVRTLNGHKRGIACLQYR---DRLVVSGSSD  197 (293)
T ss_dssp             SCCEEEEEECCCSSCEEEEEEET---TEEEEEETTSEEEEEETTTCC--EEEEEECCSSCEEEEEEE---TTEEEEEETT
T ss_pred             ccccccccccccccccccceecc---cccccccCCCceeeecCCCCc--EEEEEcccccccccccCC---CCeEEEecCC
Confidence            33   344567888888888765   457888999999999999888  677788888888888774   5689999999


Q ss_pred             CcEEEEecCCCCCCCCCCceeeeccCCCCeeEEEEecCCCcEEEEecCCCcEEEEeCCcccccccCCCCCcCCCCceeee
Q 021657          159 NSVRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQ  238 (309)
Q Consensus       159 g~i~i~d~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~  238 (309)
                      |.|++||+++      ...+..+..+...+..  +++++.+ |++|+.||.|++||+.........      .....+..
T Consensus       198 g~i~i~d~~~------~~~~~~~~~~~~~v~~--~~~~~~~-l~sg~~dg~i~iwd~~~~~~~~~~------~~~~~~~~  262 (293)
T d1p22a2         198 NTIRLWDIEC------GACLRVLEGHEELVRC--IRFDNKR-IVSGAYDGKIKVWDLVAALDPRAP------AGTLCLRT  262 (293)
T ss_dssp             SCEEEEETTT------CCEEEEECCCSSCEEE--EECCSSE-EEEEETTSCEEEEEHHHHTSTTSC------TTTTEEEE
T ss_pred             CEEEEEeccc------ceeeeeecccceeeee--ccccceE-EEEEcCCCEEEEEECCCCcccccc------CCceeeEE
Confidence            9999999998      8888888888887765  4566664 679999999999999764332211      12345677


Q ss_pred             ecCCCcceeeEEEccCCCeEEEEecCCCCCCCCCCeEEEEE
Q 021657          239 HAGHRDKVVDFHWNASDPWTVVSVSDDCDSTGGGGTLQIWR  279 (309)
Q Consensus       239 ~~~~~~~v~~~~~~~~~~~~~~s~s~d~~s~~~dg~v~vw~  279 (309)
                      +.+|...|++++|++  .+ ++       ||+.||+|++||
T Consensus       263 ~~~H~~~V~~v~~d~--~~-l~-------s~s~Dg~i~iWD  293 (293)
T d1p22a2         263 LVEHSGRVFRLQFDE--FQ-IV-------SSSHDDTILIWD  293 (293)
T ss_dssp             ECCCSSCCCCEEECS--SC-EE-------ECCSSSEEEEEC
T ss_pred             ecCCCCCEEEEEEcC--CE-EE-------EEecCCEEEEeC
Confidence            889999999999964  34 55       555559999997

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.97  E-value=3.4e-29  Score=198.32  Aligned_cols=246  Identities=19%  Similarity=0.329  Sum_probs=175.1

Q ss_pred             cccCCCCCcceEEEEECCCCCEEEEecCCCcEEEEeCCccccccccCCccc------------cccCCCCce--------
Q 021657            2 EILTGHQDNAEFALAMCPTEPYVLSGGKDKSVVLWSIQDHITSSATDPATA------------KSAGSSGSI--------   61 (309)
Q Consensus         2 ~~l~~H~~~~V~~~~~~~~~~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~------------~~~~~~~~~--------   61 (309)
                      ++|++|.+ .|++++|+|+  +|++|+.|+.+++|+...............            ........+        
T Consensus        51 ~~~~~h~~-~V~~v~~~~~--~l~s~s~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~  127 (342)
T d2ovrb2          51 RTLVGHTG-GVWSSQMRDN--IIISGSTDRTLKVWNAETGECIHTLYGHTSTVRCMHLHEKRVVSGSRDATLRVWDIETG  127 (342)
T ss_dssp             EECCCCSS-CEEEEEEETT--EEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEETTEEEEEETTSEEEEEESSSC
T ss_pred             EEEeCCCC-CEEEEEeCCC--ccccceecccccccccccccceecccccceeEeeeecccccccccccceeEEEeecccc
Confidence            57899999 8999999874  999999999999999876521111110000            000000000        


Q ss_pred             --------------------eecCCCCCCCCcccCCCCCcCcccccccccCCeEEEEEecCCCcEEEEEcCCCeEEEEEc
Q 021657           62 --------------------IKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDA  121 (309)
Q Consensus        62 --------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~  121 (309)
                                          .....+..++.+.+|+......+..+.+|...+..+.+  ++ ..+++|+.||.|++||+
T Consensus       128 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~--~~-~~l~s~~~dg~i~~~d~  204 (342)
T d2ovrb2         128 QCLHVLMGHVAAVRCVQYDGRRVVSGAYDFMVKVWDPETETCLHTLQGHTNRVYSLQF--DG-IHVVSGSLDTSIRVWDV  204 (342)
T ss_dssp             CEEEEEECCSSCEEEEEECSSCEEEEETTSCEEEEEGGGTEEEEEECCCSSCEEEEEE--CS-SEEEEEETTSCEEEEET
T ss_pred             cceeeeecccccceeeccccceeeeecCCCeEEEeecccceeeEEEcCcccccccccC--CC-CEEEEEeCCCeEEEeec
Confidence                                01111234677788888888888888888877766555  55 68999999999999999


Q ss_pred             CCCCcceEEEeeccCCceeEEEeccCCCCeEEEEcCCCcEEEEecCCCCCCCCCCceeeecc---CCCCeeEEEEecCCC
Q 021657          122 RVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEG---HSAAVLCVQWSPDKS  198 (309)
Q Consensus       122 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~---~~~~v~~~~~~~~~~  198 (309)
                      +.++  ....+..|...+.++++++   ++|++++.|+.|++||+..      .+....+..   |...+.++.+++  .
T Consensus       205 ~~~~--~~~~~~~~~~~v~~~~~~~---~~l~s~s~d~~i~iwd~~~------~~~~~~~~~~~~~~~~~~~~~~~~--~  271 (342)
T d2ovrb2         205 ETGN--CIHTLTGHQSLTSGMELKD---NILVSGNADSTVKIWDIKT------GQCLQTLQGPNKHQSAVTCLQFNK--N  271 (342)
T ss_dssp             TTCC--EEEEECCCCSCEEEEEEET---TEEEEEETTSCEEEEETTT------CCEEEEECSTTSCSSCEEEEEECS--S
T ss_pred             ccce--eeeEecccccceeEEecCC---CEEEEEcCCCEEEEEeccc------ccccccccccceeeeceeecccCC--C
Confidence            9887  6788889999999888754   6999999999999999998      666666654   445666666654  4


Q ss_pred             cEEEEecCCCcEEEEeCCcccccccCCCCCcCCCCceeeeecCCCcceeeEEEccCCCeEEEEecCCCCCCCCCCeEEEE
Q 021657          199 SVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKVVDFHWNASDPWTVVSVSDDCDSTGGGGTLQIW  278 (309)
Q Consensus       199 ~l~~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~s~d~~s~~~dg~v~vw  278 (309)
                       ++++|+.||.|++||+++. +....         -......+|...|++++|+|++ .++++++.|   |+.+..|++|
T Consensus       272 -~~~s~s~Dg~i~iwd~~tg-~~i~~---------~~~~~~~~~~~~v~~v~~s~~~-~~la~g~~d---Gt~~~~l~~~  336 (342)
T d2ovrb2         272 -FVITSSDDGTVKLWDLKTG-EFIRN---------LVTLESGGSGGVVWRIRASNTK-LVCAVGSRN---GTEETKLLVL  336 (342)
T ss_dssp             -EEEEEETTSEEEEEETTTC-CEEEE---------EEECTTGGGTCEEEEEEECSSE-EEEEEECSS---SSSCCEEEEE
T ss_pred             -eeEEEcCCCEEEEEECCCC-CEEEE---------EecccCCCCCCCEEEEEECCCC-CEEEEEeCC---CCCeeEEEEE
Confidence             5679999999999999872 21110         0011124678899999999975 467766664   5556679999


Q ss_pred             Ecc
Q 021657          279 RMS  281 (309)
Q Consensus       279 ~~~  281 (309)
                      |++
T Consensus       337 Df~  339 (342)
T d2ovrb2         337 DFD  339 (342)
T ss_dssp             ECC
T ss_pred             eCC
Confidence            997

>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Antiviral protein Ski8 (Ski8p)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.95  E-value=2.4e-27  Score=191.99  Aligned_cols=202  Identities=12%  Similarity=0.163  Sum_probs=146.4

Q ss_pred             ceEEEEECCC-----CCEEEEecCCCcEEEEeCCccccccccCCccccccCCCCceeecCCCCCCCCcccCCCCCcCccc
Q 021657           11 AEFALAMCPT-----EPYVLSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRG   85 (309)
Q Consensus        11 ~V~~~~~~~~-----~~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   85 (309)
                      .++.++|.++     +.++++++.||++++|++...........     .......                 .......
T Consensus       121 ~~~~~~~~~~~~~~~~~~~~~~~~dg~i~vw~~~~~~~~~~~~~-----~~~~~~~-----------------~~~~~~~  178 (393)
T d1sq9a_         121 SFWALKWGASNDRLLSHRLVATDVKGTTYIWKFHPFADESNSLT-----LNWSPTL-----------------ELQGTVE  178 (393)
T ss_dssp             CEEEEEEECCC----CEEEEEEETTSCEEEEEEESSSSHHHHTT-----TCCCCEE-----------------EEEEEEC
T ss_pred             ceEEEEEecCCCcccccEEEEEcCCCcEEEEEeecCCcccceee-----eeeccce-----------------eccccee
Confidence            5678888775     46799999999999999864311110000     0000000                 0001112


Q ss_pred             ccccccCCeEEEEEecCCCcEEEEEcCCCeEEEEEcCCCCcce----EEEeeccCCceeEEEeccCCCCeEEEEcCCCc-
Q 021657           86 IYNGHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPV----IKVEKAHDADLHCVDWNPLDDNLILTGSADNS-  160 (309)
Q Consensus        86 ~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~----~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~-  160 (309)
                      ....+...+.+++|+|++  +|++|+.||+|++||+.+++...    ...+.+|..+|.+++|+| ++++|++|+.|++ 
T Consensus       179 ~~~~~~~~~~~v~~s~dg--~lasgs~Dg~i~iwd~~~~~~~~~~~~~~~l~~h~~~V~~l~~sp-dg~~l~sgs~D~t~  255 (393)
T d1sq9a_         179 SPMTPSQFATSVDISERG--LIATGFNNGTVQISELSTLRPLYNFESQHSMINNSNSIRSVKFSP-QGSLLAIAHDSNSF  255 (393)
T ss_dssp             CSSSSCCCCCEEEECTTS--EEEEECTTSEEEEEETTTTEEEEEEECCC---CCCCCEEEEEECS-STTEEEEEEEETTE
T ss_pred             cccCCCCcEEEEEECCCC--EEEEEeCCCcEEEEeecccccccccccccccccccceEEEccccc-ccceeeeecCCCCc
Confidence            223456678999999986  78999999999999998876211    123457899999999999 9999999998874 


Q ss_pred             --EEEEecCCCCCCCCCCceeee-------------ccCCCCeeEEEEecCCCcEEEEecCCCcEEEEeCCcccccccCC
Q 021657          161 --VRMFDRRNLTSNGVGSPINKF-------------EGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQG  225 (309)
Q Consensus       161 --i~i~d~~~~~~~~~~~~~~~~-------------~~~~~~v~~~~~~~~~~~l~~~~~~dg~i~iwd~~~~~~~~~~~  225 (309)
                        |++||+++      ++.+..+             .+|...|++++|+|++++ |++|+.|++|++||+++        
T Consensus       256 ~~i~lwd~~~------g~~~~~l~~~~~~~~~~~~~~gH~~~V~~l~fspd~~~-l~S~s~D~~v~vWd~~~--------  320 (393)
T d1sq9a_         256 GCITLYETEF------GERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGET-LCSAGWDGKLRFWDVKT--------  320 (393)
T ss_dssp             EEEEEEETTT------CCEEEEECBC--------CCBSBSSCEEEEEECSSSSE-EEEEETTSEEEEEETTT--------
T ss_pred             ceeeeccccc------ceeeeeeccccccccceeeeecccCceeeeccCCCCCe-eEEECCCCEEEEEECCC--------
Confidence              89999998      6666555             378999999999999995 67999999999999988        


Q ss_pred             CCCcCCCCceeeeecCCCccee----eEEEccCCCeEE
Q 021657          226 PRTTNYPAGLFFQHAGHRDKVV----DFHWNASDPWTV  259 (309)
Q Consensus       226 ~~~~~~~~~~~~~~~~~~~~v~----~~~~~~~~~~~~  259 (309)
                             .+++..+.+|...|.    .++|+|++..++
T Consensus       321 -------g~~~~~l~gH~~~v~~~~~~~~~~~~~~~~~  351 (393)
T d1sq9a_         321 -------KERITTLNMHCDDIEIEEDILAVDEHGDSLA  351 (393)
T ss_dssp             -------TEEEEEEECCGGGCSSGGGCCCBCTTSCBCS
T ss_pred             -------CCEEEEECCcCCcccCCccEEEECCCCCEEE
Confidence                   556778888887775    477888776543

>d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Tricorn protease domain 2
family: Tricorn protease domain 2
domain: Tricorn protease domain 2
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=99.94  E-value=2.5e-25  Score=177.46  Aligned_cols=158  Identities=8%  Similarity=0.016  Sum_probs=130.2

Q ss_pred             CCCCcceEEEEECCCCCEEEEecCCC--cEEEEeCCccccccccCCccccccCCCCceeecCCCCCCCCcccCCCCCcCc
Q 021657            6 GHQDNAEFALAMCPTEPYVLSGGKDK--SVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGP   83 (309)
Q Consensus         6 ~H~~~~V~~~~~~~~~~~l~t~~~dg--~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   83 (309)
                      +|.. .|++++|+|||++|++++.+.  .|++||++++                                         .
T Consensus        40 ~~~~-~v~~~~~spDg~~l~~~~~~~g~~v~v~d~~~~-----------------------------------------~   77 (360)
T d1k32a3          40 PEPL-RIRYVRRGGDTKVAFIHGTREGDFLGIYDYRTG-----------------------------------------K   77 (360)
T ss_dssp             SCCS-CEEEEEECSSSEEEEEEEETTEEEEEEEETTTC-----------------------------------------C
T ss_pred             cCCC-CEEEEEECCCCCEEEEEEcCCCCEEEEEECCCC-----------------------------------------c
Confidence            6887 899999999999998776553  7999998753                                         2


Q ss_pred             ccccccccCCeEEEEEecCCCcEEEEEcCCCeEEEEEcCCCCcceEEEeeccCCceeEEEeccCCCCeEEEEc-------
Q 021657           84 RGIYNGHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGS-------  156 (309)
Q Consensus        84 ~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~-------  156 (309)
                      ...+..|...|.+++|+|++ ++|++++.++.+++|++.+++  .......|...+.+++|+| ++++|+.+.       
T Consensus        78 ~~~~~~~~~~v~~~~~spdg-~~l~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~sp-dg~~la~~~~~~~~~~  153 (360)
T d1k32a3          78 AEKFEENLGNVFAMGVDRNG-KFAVVANDRFEIMTVDLETGK--PTVIERSREAMITDFTISD-NSRFIAYGFPLKHGET  153 (360)
T ss_dssp             EEECCCCCCSEEEEEECTTS-SEEEEEETTSEEEEEETTTCC--EEEEEECSSSCCCCEEECT-TSCEEEEEEEECSSTT
T ss_pred             EEEeeCCCceEEeeeecccc-cccceeccccccccccccccc--eeeeeecccccccchhhcc-ceeeeeeeccccccce
Confidence            34456789999999999999 889999999999999998888  6677788889999999999 999988543       


Q ss_pred             ---CCCcEEEEecCCCCCCCCCCceeeeccCCCCeeEEEEecCCCcEEEEecCCCcEEEEeCCc
Q 021657          157 ---ADNSVRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEK  217 (309)
Q Consensus       157 ---~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~dg~i~iwd~~~  217 (309)
                         .++.+++||+.+      ++.. .+..+...+..++|+|+|++ |++++.++.+.+||...
T Consensus       154 ~~~~~~~~~v~d~~~------~~~~-~~~~~~~~~~~~~~spdg~~-l~~~s~~~~~~~~d~~~  209 (360)
T d1k32a3         154 DGYVMQAIHVYDMEG------RKIF-AATTENSHDYAPAFDADSKN-LYYLSYRSLDPSPDRVV  209 (360)
T ss_dssp             CSCCEEEEEEEETTT------TEEE-ECSCSSSBEEEEEECTTSCE-EEEEESCCCCCEECSSS
T ss_pred             eeccccceeeecccc------Ccee-eecccccccccccccCCCCE-EEEEeCCCceEcccccc
Confidence               445699999987      4443 44456778889999999997 56888899999998654

>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.93  E-value=1e-25  Score=174.44  Aligned_cols=201  Identities=13%  Similarity=0.161  Sum_probs=144.2

Q ss_pred             cCCCCCcceEEEEECCCCCEEEEecCCCcEEEEeCCcccccc-----ccCCc----------ccc-----------ccCC
Q 021657            4 LTGHQDNAEFALAMCPTEPYVLSGGKDKSVVLWSIQDHITSS-----ATDPA----------TAK-----------SAGS   57 (309)
Q Consensus         4 l~~H~~~~V~~~~~~~~~~~l~t~~~dg~i~vwd~~~~~~~~-----~~~~~----------~~~-----------~~~~   57 (309)
                      .++|.. .|.++++++++ .+++++.|++|++|++.......     .....          ...           ....
T Consensus        42 ~~~h~~-~V~~~~~~~~~-~~~s~s~D~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  119 (287)
T d1pgua2          42 HQDHSN-LIVSLDNSKAQ-EYSSISWDDTLKVNGITKHEFGSQPKVASANNDGFTAVLTNDDDLLILQSFTGDIIKSVRL  119 (287)
T ss_dssp             ECCCCS-CEEEEECCSTT-CCEEEETTTEEEETTEEEEECSSCEEEEEECSSSEEEEEETTSEEEEEETTTCCEEEEEEC
T ss_pred             CCCCCC-CEEEEEecCCC-eEEEEeeccccccccccccccccceeeeeeccCCceEEEeecccceeeeccceeeeeeccc
Confidence            568988 89999998765 57999999999999976531100     00000          000           0000


Q ss_pred             CCce--------eecCCCCCCCCcccCCCCCcCccccc-ccccCCeEEEEEecCCCcEEEEEcCCCeEEEEEcCCCCcce
Q 021657           58 SGSI--------IKQSPKPGDGNDKAADGPSVGPRGIY-NGHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPV  128 (309)
Q Consensus        58 ~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~  128 (309)
                      ....        ........+..+++|+....+....+ ..|...+++++|+|++ .+|++|+.||.|++||+.+++. .
T Consensus       120 ~~~~~~~~~~~~~~~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~-~~l~~g~~dg~i~i~d~~~~~~-~  197 (287)
T d1pgua2         120 NSPGSAVSLSQNYVAVGLEEGNTIQVFKLSDLEVSFDLKTPLRAKPSYISISPSE-TYIAAGDVMGKILLYDLQSREV-K  197 (287)
T ss_dssp             SSCEEEEEECSSEEEEEETTTSCEEEEETTEEEEEEECSSCCSSCEEEEEECTTS-SEEEEEETTSCEEEEETTTTEE-E
T ss_pred             cceeeeeeccCcceeeeccccceeeeeeccccceeeeeeeccCCceeEEEeccCc-cccccccccccccceeeccccc-c
Confidence            0000        00111122345677776655544433 3577899999999998 8899999999999999987662 2


Q ss_pred             EEEeeccCCceeEEEeccC---------CCCeEEEEcCCCcEEEEecCCCCCCCCCCceeeeccCCCCeeEEEEecCCCc
Q 021657          129 IKVEKAHDADLHCVDWNPL---------DDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWSPDKSS  199 (309)
Q Consensus       129 ~~~~~~~~~~v~~~~~~~~---------~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~  199 (309)
                      ...+..|...|.+++|+|.         ++.+|++|+.|+.|++||+++.     .+.+..+.+|...|++++|+|++. 
T Consensus       198 ~~~~~~h~~~v~~~~~~p~~~~~~~~~~~~~~l~sgs~D~~i~iw~~~~~-----~~~~~~~~~h~~~V~~v~~~~~~~-  271 (287)
T d1pgua2         198 TSRWAFRTSKINAISWKPAEKGANEEEIEEDLVATGSLDTNIFIYSVKRP-----MKIIKALNAHKDGVNNLLWETPST-  271 (287)
T ss_dssp             ECCSCCCSSCEEEEEECCCC------CCSCCEEEEEETTSCEEEEESSCT-----TCCEEETTSSTTCEEEEEEEETTE-
T ss_pred             cccccccccccceeeecccccccccccCCCCeeEeecCCCeEEEEECCCC-----CeEEEEeCCCCCCeEEEEECCCCE-
Confidence            3346789999999999872         3568999999999999999874     556777889999999999999875 


Q ss_pred             EEEEecCCCcEEEEeC
Q 021657          200 VFGSSAEDGLLNIWDY  215 (309)
Q Consensus       200 l~~~~~~dg~i~iwd~  215 (309)
                       +++++.|+.|++|++
T Consensus       272 -l~s~g~D~~v~iW~i  286 (287)
T d1pgua2         272 -LVSSGADACIKRWNV  286 (287)
T ss_dssp             -EEEEETTSCEEEEEE
T ss_pred             -EEEEECCCeEEEEEE
Confidence             458889999999996

>d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Tricorn protease domain 2
family: Tricorn protease domain 2
domain: Tricorn protease domain 2
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=99.93  E-value=2.6e-24  Score=171.53  Aligned_cols=192  Identities=10%  Similarity=0.032  Sum_probs=151.5

Q ss_pred             EEEEECC-CCCEEEEecCCCcEEEEeCCccccccccCCccccccCCCCceeecCCCCCCCCcccCCCCCcCccccccccc
Q 021657           13 FALAMCP-TEPYVLSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHE   91 (309)
Q Consensus        13 ~~~~~~~-~~~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   91 (309)
                      ..-.||| ||+++|+++ +|.|++||++++.                                        .. .+ +|.
T Consensus         6 ~~~~fSP~dG~~~a~~~-~g~v~v~d~~~~~----------------------------------------~~-~~-~~~   42 (360)
T d1k32a3           6 FAEDFSPLDGDLIAFVS-RGQAFIQDVSGTY----------------------------------------VL-KV-PEP   42 (360)
T ss_dssp             GEEEEEECGGGCEEEEE-TTEEEEECTTSSB----------------------------------------EE-EC-SCC
T ss_pred             hcccccCCCCCEEEEEE-CCeEEEEECCCCc----------------------------------------EE-Ec-cCC
Confidence            4568999 999999887 5799999987431                                        11 22 588


Q ss_pred             CCeEEEEEecCCCcEEEEEc-CCC-eEEEEEcCCCCcceEEEeeccCCceeEEEeccCCCCeEEEEcCCCcEEEEecCCC
Q 021657           92 DTVEDVTFCPSSAQEFCSVG-DDS-CLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNL  169 (309)
Q Consensus        92 ~~v~~~~~~~~~~~~l~s~~-~dg-~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~  169 (309)
                      ..|.+++|+|+| +.|++++ .++ .|++||+.+++   ...+..|...+.+++|+| ++++|++++.++.+++|++.+ 
T Consensus        43 ~~v~~~~~spDg-~~l~~~~~~~g~~v~v~d~~~~~---~~~~~~~~~~v~~~~~sp-dg~~l~~~~~~~~~~~~~~~~-  116 (360)
T d1k32a3          43 LRIRYVRRGGDT-KVAFIHGTREGDFLGIYDYRTGK---AEKFEENLGNVFAMGVDR-NGKFAVVANDRFEIMTVDLET-  116 (360)
T ss_dssp             SCEEEEEECSSS-EEEEEEEETTEEEEEEEETTTCC---EEECCCCCCSEEEEEECT-TSSEEEEEETTSEEEEEETTT-
T ss_pred             CCEEEEEECCCC-CEEEEEEcCCCCEEEEEECCCCc---EEEeeCCCceEEeeeecc-cccccceeccccccccccccc-
Confidence            899999999999 6666554 443 79999998876   556678999999999999 999999999999999999998 


Q ss_pred             CCCCCCCceeeeccCCCCeeEEEEecCCCcEEEE---------ecCCCcEEEEeCCcccccccCCCCCcCCCCceeeeec
Q 021657          170 TSNGVGSPINKFEGHSAAVLCVQWSPDKSSVFGS---------SAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHA  240 (309)
Q Consensus       170 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~---------~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~  240 (309)
                           ++....+..+...+.+++|+|+|++++.+         +..++.+++||+...                ......
T Consensus       117 -----~~~~~~~~~~~~~~~~~~~spdg~~la~~~~~~~~~~~~~~~~~~~v~d~~~~----------------~~~~~~  175 (360)
T d1k32a3         117 -----GKPTVIERSREAMITDFTISDNSRFIAYGFPLKHGETDGYVMQAIHVYDMEGR----------------KIFAAT  175 (360)
T ss_dssp             -----CCEEEEEECSSSCCCCEEECTTSCEEEEEEEECSSTTCSCCEEEEEEEETTTT----------------EEEECS
T ss_pred             -----cceeeeeecccccccchhhccceeeeeeeccccccceeeccccceeeeccccC----------------ceeeec
Confidence                 78888888888999999999999975432         334567999999871                223344


Q ss_pred             CCCcceeeEEEccCCCeEEEEecCCCCCCCCCCeEEEEEccc
Q 021657          241 GHRDKVVDFHWNASDPWTVVSVSDDCDSTGGGGTLQIWRMSD  282 (309)
Q Consensus       241 ~~~~~v~~~~~~~~~~~~~~s~s~d~~s~~~dg~v~vw~~~~  282 (309)
                      .+...+..++|+|++.+|+ +++       .|+.+.+|+...
T Consensus       176 ~~~~~~~~~~~spdg~~l~-~~s-------~~~~~~~~d~~~  209 (360)
T d1k32a3         176 TENSHDYAPAFDADSKNLY-YLS-------YRSLDPSPDRVV  209 (360)
T ss_dssp             CSSSBEEEEEECTTSCEEE-EEE-------SCCCCCEECSSS
T ss_pred             ccccccccccccCCCCEEE-EEe-------CCCceEcccccc
Confidence            5677889999999988765 344       448999998763

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.92  E-value=8.4e-24  Score=166.76  Aligned_cols=264  Identities=13%  Similarity=0.044  Sum_probs=166.2

Q ss_pred             CCCCCcceEEEEECCCC-CEEEEecCCCcEEEEeCCccccccccCCcccccc---CCCCceeecCCCCCCCCcccCCCCC
Q 021657            5 TGHQDNAEFALAMCPTE-PYVLSGGKDKSVVLWSIQDHITSSATDPATAKSA---GSSGSIIKQSPKPGDGNDKAADGPS   80 (309)
Q Consensus         5 ~~H~~~~V~~~~~~~~~-~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~   80 (309)
                      .+|.+ +|++++|+|++ .+|++|+.||.|++|++.................   ..............+..+.+|+...
T Consensus        53 ~~h~~-~V~~v~f~~~~~~~l~sg~~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wd~~~  131 (342)
T d1yfqa_          53 LRYKH-PLLCCNFIDNTDLQIYVGTVQGEILKVDLIGSPSFQALTNNEANLGICRICKYGDDKLIAASWDGLIEVIDPRN  131 (342)
T ss_dssp             EECSS-CEEEEEEEESSSEEEEEEETTSCEEEECSSSSSSEEECBSCCCCSCEEEEEEETTTEEEEEETTSEEEEECHHH
T ss_pred             cCCCC-CEEEEEEeCCCCCEEEEcccccceeeeecccccccccccccccccccccccccccccccccccccccceeeccc
Confidence            36888 89999999864 5799999999999999987633222211110000   0000001112233456677777654


Q ss_pred             cCccccc----cc--ccCCeEEEEEecCCCcEEEEEcCCCeEEEEEcCCCCcc-eEEEeeccCCceeEEEeccCCCCeEE
Q 021657           81 VGPRGIY----NG--HEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSP-VIKVEKAHDADLHCVDWNPLDDNLIL  153 (309)
Q Consensus        81 ~~~~~~~----~~--~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~-~~~~~~~~~~~v~~~~~~~~~~~~l~  153 (309)
                      .......    ..  .......+.+.+.+ ..+++++.|+.|++||+...+.. .......+...+.+..+.+.++..++
T Consensus       132 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  210 (342)
T d1yfqa_         132 YGDGVIAVKNLNSNNTKVKNKIFTMDTNS-SRLIVGMNNSQVQWFRLPLCEDDNGTIEESGLKYQIRDVALLPKEQEGYA  210 (342)
T ss_dssp             HTTBCEEEEESCSSSSSSCCCEEEEEECS-SEEEEEESTTEEEEEESSCCTTCCCEEEECSCSSCEEEEEECSGGGCEEE
T ss_pred             cccceeeecccccccccceeeeeeeeccC-CceeeecCCCcEEEEecccCcccceeeeecccccceeeeEeecCCCCEEE
Confidence            4332222    11  12334556667776 78999999999999999876532 22333445556777777665788999


Q ss_pred             EEcCCCcEEEEecCCCCCCCCCCce---------eeeccCCCCeeEEEEecCCCcEEEEecCCCcEEEEeCCcccccccC
Q 021657          154 TGSADNSVRMFDRRNLTSNGVGSPI---------NKFEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQ  224 (309)
Q Consensus       154 ~~~~dg~i~i~d~~~~~~~~~~~~~---------~~~~~~~~~v~~~~~~~~~~~l~~~~~~dg~i~iwd~~~~~~~~~~  224 (309)
                      +++.||.+.+|+.............         .....|...+++++|+|++++ ||+|+.||.|++||+++       
T Consensus       211 ~~s~dg~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~-lasg~~Dg~v~vWD~~~-------  282 (342)
T d1yfqa_         211 CSSIDGRVAVEFFDDQGDDYNSSKRFAFRCHRLNLKDTNLAYPVNSIEFSPRHKF-LYTAGSDGIISCWNLQT-------  282 (342)
T ss_dssp             EEETTSEEEEEECCTTCCSTTCTTCEEEECCCCCTTCCSSCCCEEEEEECTTTCC-EEEEETTSCEEEEETTT-------
T ss_pred             eecCCCeEEEEEecCCcceeeccccceeeeeeeccCCCcccccceeEEecCCccE-EEEECCCCEEEEEECCC-------
Confidence            9999999999998763321111111         112345667999999999996 67999999999999987       


Q ss_pred             CCCCcCCCCceeeeecCCCcceeeEEEccCCCeEEEEecCCCCCCCCCCeEEEEEccccccCChhhHhHhhhcccceEEE
Q 021657          225 GPRTTNYPAGLFFQHAGHRDKVVDFHWNASDPWTVVSVSDDCDSTGGGGTLQIWRMSDLIYRPQDEVLAELEKFKAHVIS  304 (309)
Q Consensus       225 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~s~d~~s~~~dg~v~vw~~~~~~~~~~~~~~~~~~~h~~~v~~  304 (309)
                              .+.+..+..+ ..+..++|+|++..++++.++        +.+++|....          ..++.|...|..
T Consensus       283 --------~~~l~~~~~~-~~~~~~~~s~~~~~l~~a~sd--------d~~~~~~~~~----------~~~~~~~~~i~~  335 (342)
T d1yfqa_         283 --------RKKIKNFAKF-NEDSVVKIACSDNILCLATSD--------DTFKTNAAID----------QTIELNASSIYI  335 (342)
T ss_dssp             --------TEEEEECCCC-SSSEEEEEEECSSEEEEEEEC--------THHHHCSSSC----------TTSCCCCCEEEE
T ss_pred             --------CcEEEEecCC-CCCEEEEEEeCCCEEEEEEcC--------CcEEEeeeeC----------CCccCCCCeEEE
Confidence                    2334444332 234456777778776655544        4777776542          234556666654


Q ss_pred             e
Q 021657          305 C  305 (309)
Q Consensus       305 ~  305 (309)
                      +
T Consensus       336 ~  336 (342)
T d1yfqa_         336 I  336 (342)
T ss_dssp             E
T ss_pred             E
Confidence            4

>d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=99.90  E-value=7.4e-23  Score=167.04  Aligned_cols=262  Identities=8%  Similarity=0.048  Sum_probs=168.2

Q ss_pred             cccCCCCCcceEEEEECCCCCEEEEecCCCcEEEEeCCccccccccCCccccccCCCCceeecCCCCCCCCcccCCCCCc
Q 021657            2 EILTGHQDNAEFALAMCPTEPYVLSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSV   81 (309)
Q Consensus         2 ~~l~~H~~~~V~~~~~~~~~~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (309)
                      ++|+.|.  .+..++|+|||++|++++.|++|++||+.++.....                                   
T Consensus        56 ~~l~~g~--~~~~vafSPDGk~l~~~~~d~~v~vwd~~t~~~~~~-----------------------------------   98 (426)
T d1hzua2          56 KVIDTGY--AVHISRMSASGRYLLVIGRDARIDMIDLWAKEPTKV-----------------------------------   98 (426)
T ss_dssp             EEEECCS--SEEEEEECTTSCEEEEEETTSEEEEEETTSSSCEEE-----------------------------------
T ss_pred             EEEeCCC--CeeEEEECCCCCEEEEEeCCCCEEEEEccCCceeEE-----------------------------------
Confidence            4667764  479999999999999999999999999986421110                                   


Q ss_pred             CcccccccccCCeEEEEEecCCCcEEEEEcCCCeEEEEEcCCCCcceEEEeeccCCcee-----------EEEeccCCCC
Q 021657           82 GPRGIYNGHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLH-----------CVDWNPLDDN  150 (309)
Q Consensus        82 ~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~-----------~~~~~~~~~~  150 (309)
                      ..+....+|...+.++.|+|+|..+++++..++.+++||..+++  .......+...+.           .+..++ ++.
T Consensus        99 ~~i~~~~~~~~~~~s~~~spDG~~l~v~~~~~~~v~i~d~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~i~~s~-d~~  175 (426)
T d1hzua2          99 AEIKIGIEARSVESSKFKGYEDRYTIAGAYWPPQFAIMDGETLE--PKQIVSTRGMTVDTQTYHPEPRVAAIIASH-EHP  175 (426)
T ss_dssp             EEEECCSEEEEEEECCSTTCTTTEEEEEEEESSEEEEEETTTCC--EEEEEECCEECSSSCCEESCCCEEEEEECS-SSS
T ss_pred             EEEeCCCCCcceEEeeeecCCCCEEEEeecCCCeEEEEcCCccc--eeEEeeccCCCccceeecCCCceeEEEECC-CCC
Confidence            01122345667777888899995556777789999999998887  5555555444443           444444 333


Q ss_pred             eEEEE-cCCCcEEEEecCCCCCCCCCCceeeeccCCCCeeEEEEecCCCcEEEEecCCCcEEEEeCCcccccccCC----
Q 021657          151 LILTG-SADNSVRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQG----  225 (309)
Q Consensus       151 ~l~~~-~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~dg~i~iwd~~~~~~~~~~~----  225 (309)
                      .++.. ...+.+.+++....     .........+...+..++|+|++++++++...+..+.+++...........    
T Consensus       176 ~~~~~~~~~~~i~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~g~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~  250 (426)
T d1hzua2         176 EFIVNVKETGKVLLVNYKDI-----DNLTVTSIGAAPFLADGGWDSSHRYFMTAANNSNKVAVIDSKDRRLSALVDVGKT  250 (426)
T ss_dssp             EEEEEETTTTEEEEEECSSS-----SSCEEEEEECCSSEEEEEECTTSCEEEEEETTCSEEEEEETTTTEEEEEEECSSC
T ss_pred             EEEEecCCCCeEEEEEeccc-----cceeeEEeccCCccEeeeECCCCcEEEeeeecccceeeeecccccEEEEeccCCc
Confidence            33332 22344555554441     112223334667788999999999988888888889999887633211000    


Q ss_pred             CC---C--------------------------------cCCCCceeeeecCCCcceeeEEEccCCCeEEEEecCCCCCCC
Q 021657          226 PR---T--------------------------------TNYPAGLFFQHAGHRDKVVDFHWNASDPWTVVSVSDDCDSTG  270 (309)
Q Consensus       226 ~~---~--------------------------------~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~s~d~~s~~  270 (309)
                      +.   .                                .....+....+.+|...+..++|+|++.++++..... .++.
T Consensus       251 ~~~~~~~~~~~~~~~~~~~~~~~~d~~v~~~~~~~~~~~~~~~~~~~~l~g~~~~v~~v~~sPdg~~l~v~~~~~-~s~~  329 (426)
T d1hzua2         251 PHPGRGANFVHPKYGPVWSTSHLGDGSISLIGTDPKNHPQYAWKKVAELQGQGGGSLFIKTHPKSSHLYVDTTFN-PDAR  329 (426)
T ss_dssp             CCCSCCEEEEETTTEEEEEEECTTTCEEEEEECCTTTCTTTBTSEEEEEECSSSCCCCEECCTTCSEEEECCTTC-SSHH
T ss_pred             ccccceeeeecCCCCceEEeccCCCceEEEeeccccccccccceEeEEEecCCCceeEEEcCCCCceEEEeecCC-CCcc
Confidence            00   0                                0011134556788999999999999999887643321 0344


Q ss_pred             CCCeEEEEEccccccCChhhHh---HhhhcccceEEEeeeCC
Q 021657          271 GGGTLQIWRMSDLIYRPQDEVL---AELEKFKAHVISCTSKP  309 (309)
Q Consensus       271 ~dg~v~vw~~~~~~~~~~~~~~---~~~~~h~~~v~~~~~~P  309 (309)
                      .|++|+|||+.+.....+..++   ..+..|...|..++|+|
T Consensus       330 ~~~tv~vwd~~t~~~~~~~~~~~~~~~~~~~~~rv~~~~fSp  371 (426)
T d1hzua2         330 ISQSVAVFDLKNLDAKYQVLPIAEWADLGEGAKRVVQPEYNK  371 (426)
T ss_dssp             HHTCEEEEETTCTTSCCEEECHHHHHCCCSSCCCEEEEEECS
T ss_pred             cCCEEEEEECCCCCcCeEEeccchhcccCCCCccEEEEEECC
Confidence            5689999999853322211112   22345667799999998

>d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: YVTN repeat
domain: Surface layer protein
species: Archaeon Methanosarcina mazei [TaxId: 2209]

Probab=99.90  E-value=1.6e-21  Score=151.41  Aligned_cols=244  Identities=11%  Similarity=0.120  Sum_probs=169.7

Q ss_pred             ceEEEEECCCCCEE-EEecCCCcEEEEeCCccccccccCCcc---ccccCCCCceeecCCCCCCCCcccCCCCCcCcccc
Q 021657           11 AEFALAMCPTEPYV-LSGGKDKSVVLWSIQDHITSSATDPAT---AKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGI   86 (309)
Q Consensus        11 ~V~~~~~~~~~~~l-~t~~~dg~i~vwd~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   86 (309)
                      .+..++|+|||++| ++++.++.|++||+.++..........   .......... .......+..+.+++..+.+....
T Consensus        33 ~p~~va~spdG~~l~v~~~~~~~i~v~d~~t~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~  111 (301)
T d1l0qa2          33 NPMGAVISPDGTKVYVANAHSNDVSIIDTATNNVIATVPAGSSPQGVAVSPDGKQ-VYVTNMASSTLSVIDTTSNTVAGT  111 (301)
T ss_dssp             SEEEEEECTTSSEEEEEEGGGTEEEEEETTTTEEEEEEECSSSEEEEEECTTSSE-EEEEETTTTEEEEEETTTTEEEEE
T ss_pred             CceEEEEeCCCCEEEEEECCCCEEEEEECCCCceeeeeecccccccccccccccc-ccccccccceeeecccccceeeee
Confidence            35799999999987 577789999999999875433221111   1111111111 112233456677778777777766


Q ss_pred             cccccCCeEEEEEecCCCcEEEEEcCCCeEEEEEcCCCCcceEEEeeccCCceeEEEeccCCCCeEEEEcCC-CcEEEEe
Q 021657           87 YNGHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSAD-NSVRMFD  165 (309)
Q Consensus        87 ~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d-g~i~i~d  165 (309)
                      +..+ ....++.|+|++..+++++..++.+.+|+..+..  ...... +...+..++++| ++..++++..+ +.+.+|+
T Consensus       112 ~~~~-~~~~~~~~~~dg~~~~~~~~~~~~~~~~~~~~~~--~~~~~~-~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~  186 (301)
T d1l0qa2         112 VKTG-KSPLGLALSPDGKKLYVTNNGDKTVSVINTVTKA--VINTVS-VGRSPKGIAVTP-DGTKVYVANFDSMSISVID  186 (301)
T ss_dssp             EECS-SSEEEEEECTTSSEEEEEETTTTEEEEEETTTTE--EEEEEE-CCSSEEEEEECT-TSSEEEEEETTTTEEEEEE
T ss_pred             cccc-ccceEEEeecCCCeeeeeeccccceeeeeccccc--eeeecc-cCCCceEEEeec-cccceeeeccccccccccc
Confidence            6644 4578899999997777888889999999998777  444443 445678999999 77776666654 6677777


Q ss_pred             cCCCCCCCCCCceeeeccCCCCeeEEEEecCCCcEEEEe--cCCCcEEEEeCCcccccccCCCCCcCCCCceeeeecCCC
Q 021657          166 RRNLTSNGVGSPINKFEGHSAAVLCVQWSPDKSSVFGSS--AEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHR  243 (309)
Q Consensus       166 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~--~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  243 (309)
                      ...      .+....+. ....+..+++++++..+++++  ..++.|++||+.+               .+.+..+.. .
T Consensus       187 ~~~------~~~~~~~~-~~~~~~~~~~~~~g~~~~v~~~~~~~~~v~v~D~~t---------------~~~~~~~~~-~  243 (301)
T d1l0qa2         187 TVT------NSVIDTVK-VEAAPSGIAVNPEGTKAYVTNVDKYFNTVSMIDTGT---------------NKITARIPV-G  243 (301)
T ss_dssp             TTT------TEEEEEEE-CSSEEEEEEECTTSSEEEEEEECSSCCEEEEEETTT---------------TEEEEEEEC-C
T ss_pred             ccc------eeeeeccc-ccCCcceeeccccccccccccccceeeeeeeeecCC---------------CeEEEEEcC-C
Confidence            776      55555554 345678899999999876544  3457899999987               223333333 3


Q ss_pred             cceeeEEEccCCCeEEEEecCCCCCCCCCCeEEEEEccccccCChhhHhHhhh
Q 021657          244 DKVVDFHWNASDPWTVVSVSDDCDSTGGGGTLQIWRMSDLIYRPQDEVLAELE  296 (309)
Q Consensus       244 ~~v~~~~~~~~~~~~~~s~s~d~~s~~~dg~v~vw~~~~~~~~~~~~~~~~~~  296 (309)
                      ..+.+++|+|++.+++++++.|       +.|++||++      +++++.++.
T Consensus       244 ~~~~~va~spdg~~l~va~~~~-------~~i~v~D~~------t~~~~~~~~  283 (301)
T d1l0qa2         244 PDPAGIAVTPDGKKVYVALSFC-------NTVSVIDTA------TNTITATMA  283 (301)
T ss_dssp             SSEEEEEECTTSSEEEEEETTT-------TEEEEEETT------TTEEEEEEE
T ss_pred             CCEEEEEEeCCCCEEEEEECCC-------CeEEEEECC------CCeEEEEEe
Confidence            4579999999999988876666       999999998      566665553

>d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.89  E-value=1.2e-21  Score=159.67  Aligned_cols=169  Identities=8%  Similarity=0.009  Sum_probs=125.1

Q ss_pred             cccCCCCCcceEEEEECCCCCEEEEecCCCcEEEEeCCccccccccCCccccccCCCCceeecCCCCCCCCcccCCCCCc
Q 021657            2 EILTGHQDNAEFALAMCPTEPYVLSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSV   81 (309)
Q Consensus         2 ~~l~~H~~~~V~~~~~~~~~~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (309)
                      +.+..|.  .+..++|||||++|++++.||+|++||+.+......                                   
T Consensus        56 ~~~~~g~--~~~~v~fSpDG~~l~~~s~dg~v~~~d~~t~~~~~~-----------------------------------   98 (432)
T d1qksa2          56 TVLDTGY--AVHISRLSASGRYLFVIGRDGKVNMIDLWMKEPTTV-----------------------------------   98 (432)
T ss_dssp             EEEECSS--CEEEEEECTTSCEEEEEETTSEEEEEETTSSSCCEE-----------------------------------
T ss_pred             EEEeCCC--CeeEEEECCCCCEEEEEcCCCCEEEEEeeCCCceEE-----------------------------------
Confidence            4566664  479999999999999999999999999975321100                                   


Q ss_pred             CcccccccccCCeEEEEEecCCCcEEEEEcCCCeEEEEEcCCCCcceEEEeec-----------cCCceeEEEeccCCCC
Q 021657           82 GPRGIYNGHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPVIKVEKA-----------HDADLHCVDWNPLDDN  150 (309)
Q Consensus        82 ~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~-----------~~~~v~~~~~~~~~~~  150 (309)
                      ..+....+|.+.+.+..|+|||+.++++++.++.|++||..+++  ....+..           +......+.++| ++.
T Consensus        99 ~~i~~~~~~~~~~~s~~~SpDG~~l~vs~~~~~~v~i~d~~t~~--~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~-dg~  175 (432)
T d1qksa2          99 AEIKIGSEARSIETSKMEGWEDKYAIAGAYWPPQYVIMDGETLE--PKKIQSTRGMTYDEQEYHPEPRVAAILASH-YRP  175 (432)
T ss_dssp             EEEECCSEEEEEEECCSTTCTTTEEEEEEEETTEEEEEETTTCC--EEEEEECCEECTTTCCEESCCCEEEEEECS-SSS
T ss_pred             EEEecCCCCCCeEEecccCCCCCEEEEEcCCCCeEEEEeCcccc--ceeeeccCCccccceeccCCCceeEEEECC-CCC
Confidence            01222345666677778889995567889999999999999887  4444333           334566788899 665


Q ss_pred             e-EEEEcCCCcEEEEecCCCCCCCCCCce--eeeccCCCCeeEEEEecCCCcEEEEecCCCcEEEEeCCc
Q 021657          151 L-ILTGSADNSVRMFDRRNLTSNGVGSPI--NKFEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEK  217 (309)
Q Consensus       151 ~-l~~~~~dg~i~i~d~~~~~~~~~~~~~--~~~~~~~~~v~~~~~~~~~~~l~~~~~~dg~i~iwd~~~  217 (309)
                      . +++...++.|.+||..+      .+..  ..+. +...+..++|+|+|+++++++..++.+.++|...
T Consensus       176 ~~~vs~~~~~~i~~~d~~~------~~~~~~~~i~-~g~~~~~~~~spdg~~~~va~~~~~~v~v~d~~~  238 (432)
T d1qksa2         176 EFIVNVKETGKILLVDYTD------LNNLKTTEIS-AERFLHDGGLDGSHRYFITAANARNKLVVIDTKE  238 (432)
T ss_dssp             EEEEEETTTTEEEEEETTC------SSEEEEEEEE-CCSSEEEEEECTTSCEEEEEEGGGTEEEEEETTT
T ss_pred             EEEEEEccCCeEEEEEccC------CCcceEEEEc-ccCccccceECCCCCEEEEeccccceEEEeeccc
Confidence            5 56667789999999887      4433  3333 4556889999999999887777788999999876

>d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=99.86  E-value=5.3e-21  Score=155.95  Aligned_cols=231  Identities=11%  Similarity=0.076  Sum_probs=151.7

Q ss_pred             EECCCC--CEEEEecCCCcEEEEeCCccccccccCCccccccCCCCceeecCCCCCCCCcccCCCCCcCcccccccccCC
Q 021657           16 AMCPTE--PYVLSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDT   93 (309)
Q Consensus        16 ~~~~~~--~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   93 (309)
                      .++.+.  -++++.+.||+|+|||+.+                                        .+.+..+..|. .
T Consensus        25 ~~~~d~~~~~~V~~~~dg~v~vwD~~t----------------------------------------~~~~~~l~~g~-~   63 (426)
T d1hzua2          25 LNDLDLPNLFSVTLRDAGQIALVDGDS----------------------------------------KKIVKVIDTGY-A   63 (426)
T ss_dssp             CSCCCGGGEEEEEETTTTEEEEEETTT----------------------------------------CSEEEEEECCS-S
T ss_pred             cccCCCCeEEEEEEcCCCEEEEEECCC----------------------------------------CcEEEEEeCCC-C
Confidence            344543  3567899999999999974                                        44556666664 5


Q ss_pred             eEEEEEecCCCcEEEEEcCCCeEEEEEcCCCCcceEEEe---eccCCceeEEEeccCCCCeEEE-EcCCCcEEEEecCCC
Q 021657           94 VEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPVIKVE---KAHDADLHCVDWNPLDDNLILT-GSADNSVRMFDRRNL  169 (309)
Q Consensus        94 v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~---~~~~~~v~~~~~~~~~~~~l~~-~~~dg~i~i~d~~~~  169 (309)
                      +..++|+||| +++++++.|++|++||+.+++......+   .+|...+.+++|+| +++++++ +..++.+++||... 
T Consensus        64 ~~~vafSPDG-k~l~~~~~d~~v~vwd~~t~~~~~~~~i~~~~~~~~~~~s~~~sp-DG~~l~v~~~~~~~v~i~d~~~-  140 (426)
T d1hzua2          64 VHISRMSASG-RYLLVIGRDARIDMIDLWAKEPTKVAEIKIGIEARSVESSKFKGY-EDRYTIAGAYWPPQFAIMDGET-  140 (426)
T ss_dssp             EEEEEECTTS-CEEEEEETTSEEEEEETTSSSCEEEEEEECCSEEEEEEECCSTTC-TTTEEEEEEEESSEEEEEETTT-
T ss_pred             eeEEEECCCC-CEEEEEeCCCCEEEEEccCCceeEEEEEeCCCCCcceEEeeeecC-CCCEEEEeecCCCeEEEEcCCc-
Confidence            8999999999 7889999999999999998874333332   24556677888899 8887654 55789999999998 


Q ss_pred             CCCCCCCceeeeccCCCCee-----------EEEEecCCCcEEEEecCCCcEEEEeCCcccccccCCCCCcCCCCceeee
Q 021657          170 TSNGVGSPINKFEGHSAAVL-----------CVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQ  238 (309)
Q Consensus       170 ~~~~~~~~~~~~~~~~~~v~-----------~~~~~~~~~~l~~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~  238 (309)
                           +..+..+..+...+.           .+.+++++..++.+....+.+.+++....              ......
T Consensus       141 -----~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~s~d~~~~~~~~~~~~~i~~~~~~~~--------------~~~~~~  201 (426)
T d1hzua2         141 -----LEPKQIVSTRGMTVDTQTYHPEPRVAAIIASHEHPEFIVNVKETGKVLLVNYKDI--------------DNLTVT  201 (426)
T ss_dssp             -----CCEEEEEECCEECSSSCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEECSSS--------------SSCEEE
T ss_pred             -----cceeEEeeccCCCccceeecCCCceeEEEECCCCCEEEEecCCCCeEEEEEeccc--------------cceeeE
Confidence                 777776665544443           44455555544444444444544444331              112233


Q ss_pred             ecCCCcceeeEEEccCCCeEEEEecCCCC----------------------------------------CCCCCCeEEEE
Q 021657          239 HAGHRDKVVDFHWNASDPWTVVSVSDDCD----------------------------------------STGGGGTLQIW  278 (309)
Q Consensus       239 ~~~~~~~v~~~~~~~~~~~~~~s~s~d~~----------------------------------------s~~~dg~v~vw  278 (309)
                      ...+...+..+.|+|++.+++++...+..                                        +.+.|+.+.+|
T Consensus       202 ~~~~~~~~~~~~~~~~g~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~v~~~  281 (426)
T d1hzua2         202 SIGAAPFLADGGWDSSHRYFMTAANNSNKVAVIDSKDRRLSALVDVGKTPHPGRGANFVHPKYGPVWSTSHLGDGSISLI  281 (426)
T ss_dssp             EEECCSSEEEEEECTTSCEEEEEETTCSEEEEEETTTTEEEEEEECSSCCCCSCCEEEEETTTEEEEEEECTTTCEEEEE
T ss_pred             EeccCCccEeeeECCCCcEEEeeeecccceeeeecccccEEEEeccCCcccccceeeeecCCCCceEEeccCCCceEEEe
Confidence            44567778899999988887776544310                                        22345666666


Q ss_pred             Ecccccc-CChhhHhHhhhcccceEEEeeeCC
Q 021657          279 RMSDLIY-RPQDEVLAELEKFKAHVISCTSKP  309 (309)
Q Consensus       279 ~~~~~~~-~~~~~~~~~~~~h~~~v~~~~~~P  309 (309)
                      +...... ....+...++++|...+..++|+|
T Consensus       282 ~~~~~~~~~~~~~~~~~l~g~~~~v~~v~~sP  313 (426)
T d1hzua2         282 GTDPKNHPQYAWKKVAELQGQGGGSLFIKTHP  313 (426)
T ss_dssp             ECCTTTCTTTBTSEEEEEECSSSCCCCEECCT
T ss_pred             eccccccccccceEeEEEecCCCceeEEEcCC
Confidence            6543211 112245566778888888888887

>d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.86  E-value=2.3e-20  Score=151.99  Aligned_cols=192  Identities=9%  Similarity=0.038  Sum_probs=146.1

Q ss_pred             CCEEEEecCCCcEEEEeCCccccccccCCccccccCCCCceeecCCCCCCCCcccCCCCCcCcccccccccCCeEEEEEe
Q 021657           21 EPYVLSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFC  100 (309)
Q Consensus        21 ~~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~  100 (309)
                      .-++++.+.||+|.|||.++                                        .+.+..+..+ ..+..++|+
T Consensus        32 ~~~~v~~~d~g~v~v~D~~t----------------------------------------~~v~~~~~~g-~~~~~v~fS   70 (432)
T d1qksa2          32 NLFSVTLRDAGQIALIDGST----------------------------------------YEIKTVLDTG-YAVHISRLS   70 (432)
T ss_dssp             GEEEEEETTTTEEEEEETTT----------------------------------------CCEEEEEECS-SCEEEEEEC
T ss_pred             cEEEEEEcCCCEEEEEECCC----------------------------------------CcEEEEEeCC-CCeeEEEEC
Confidence            33468999999999999974                                        4455566655 468999999


Q ss_pred             cCCCcEEEEEcCCCeEEEEEcCCCCcceEEEe---eccCCceeEEEeccCCCCeE-EEEcCCCcEEEEecCCCCCCCCCC
Q 021657          101 PSSAQEFCSVGDDSCLILWDARVGTSPVIKVE---KAHDADLHCVDWNPLDDNLI-LTGSADNSVRMFDRRNLTSNGVGS  176 (309)
Q Consensus       101 ~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~---~~~~~~v~~~~~~~~~~~~l-~~~~~dg~i~i~d~~~~~~~~~~~  176 (309)
                      ||| +++++++.|+.|++||+.+++......+   ..|...+.+..|+| ++++| ++++.++.|++||..+      ++
T Consensus        71 pDG-~~l~~~s~dg~v~~~d~~t~~~~~~~~i~~~~~~~~~~~s~~~Sp-DG~~l~vs~~~~~~v~i~d~~t------~~  142 (432)
T d1qksa2          71 ASG-RYLFVIGRDGKVNMIDLWMKEPTTVAEIKIGSEARSIETSKMEGW-EDKYAIAGAYWPPQYVIMDGET------LE  142 (432)
T ss_dssp             TTS-CEEEEEETTSEEEEEETTSSSCCEEEEEECCSEEEEEEECCSTTC-TTTEEEEEEEETTEEEEEETTT------CC
T ss_pred             CCC-CEEEEEcCCCCEEEEEeeCCCceEEEEEecCCCCCCeEEecccCC-CCCEEEEEcCCCCeEEEEeCcc------cc
Confidence            999 7889999999999999988764333332   34555667778889 88875 6788899999999998      77


Q ss_pred             ceeeecc-----------CCCCeeEEEEecCCCcEEEEecCCCcEEEEeCCcccccccCCCCCcCCCCceeeeecCCCcc
Q 021657          177 PINKFEG-----------HSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDK  245 (309)
Q Consensus       177 ~~~~~~~-----------~~~~v~~~~~~~~~~~l~~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  245 (309)
                      ++..+..           +......+.++|++..++++...++.|.+||.......             .+.. ..+...
T Consensus       143 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg~~~~vs~~~~~~i~~~d~~~~~~~-------------~~~~-i~~g~~  208 (432)
T d1qksa2         143 PKKIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFIVNVKETGKILLVDYTDLNNL-------------KTTE-ISAERF  208 (432)
T ss_dssp             EEEEEECCEECTTTCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEETTCSSEE-------------EEEE-EECCSS
T ss_pred             ceeeeccCCccccceeccCCCceeEEEECCCCCEEEEEEccCCeEEEEEccCCCcc-------------eEEE-EcccCc
Confidence            7766543           23456678999999988888889999999998762211             1111 234556


Q ss_pred             eeeEEEccCCCeEEEEecCCCCCCCCCCeEEEEEccc
Q 021657          246 VVDFHWNASDPWTVVSVSDDCDSTGGGGTLQIWRMSD  282 (309)
Q Consensus       246 v~~~~~~~~~~~~~~s~s~d~~s~~~dg~v~vw~~~~  282 (309)
                      +..++|+|++.+++++...+       +.+.++|...
T Consensus       209 ~~~~~~spdg~~~~va~~~~-------~~v~v~d~~~  238 (432)
T d1qksa2         209 LHDGGLDGSHRYFITAANAR-------NKLVVIDTKE  238 (432)
T ss_dssp             EEEEEECTTSCEEEEEEGGG-------TEEEEEETTT
T ss_pred             cccceECCCCCEEEEecccc-------ceEEEeeccc
Confidence            88999999999888876665       8999999874

>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Pseudomonas putida [TaxId: 303]

Probab=99.83  E-value=1.4e-19  Score=142.96  Aligned_cols=111  Identities=6%  Similarity=0.034  Sum_probs=81.3

Q ss_pred             EEECCCCCEEEEecCCCcEEEEeCCccccccccCCccccccCCCCceeecCCCCCCCCcccCCCCCcCcccccc-cccCC
Q 021657           15 LAMCPTEPYVLSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYN-GHEDT   93 (309)
Q Consensus        15 ~~~~~~~~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~   93 (309)
                      ++|++++++|++++.|++|.|||++++                                        +.+..+. .|...
T Consensus         2 ~a~~~~~~~l~~~~~~~~v~v~D~~t~----------------------------------------~~~~t~~~~~~~~   41 (346)
T d1jmxb_           2 PALKAGHEYMIVTNYPNNLHVVDVASD----------------------------------------TVYKSCVMPDKFG   41 (346)
T ss_dssp             CCCCTTCEEEEEEETTTEEEEEETTTT----------------------------------------EEEEEEECSSCCS
T ss_pred             ccCCCCCcEEEEEcCCCEEEEEECCCC----------------------------------------CEEEEEEcCCCCC
Confidence            478999999999999999999999853                                        3333333 34556


Q ss_pred             eEEEEEecCCCcEEEEEcCCCeEEEEEcCCCCcceEEEeeccC------CceeEEEeccCCCCeEEEEc-----------
Q 021657           94 VEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPVIKVEKAHD------ADLHCVDWNPLDDNLILTGS-----------  156 (309)
Q Consensus        94 v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~------~~v~~~~~~~~~~~~l~~~~-----------  156 (309)
                      +.+++|+|||..+++++..++.|.+||+.+++  ....+....      ..+..++|+| +++++++++           
T Consensus        42 p~~l~~spDG~~l~v~~~~~~~v~~~d~~t~~--~~~~~~~~~~~~~~~~~~~~v~~s~-DG~~l~v~~~~~~~~~~~~~  118 (346)
T d1jmxb_          42 PGTAMMAPDNRTAYVLNNHYGDIYGIDLDTCK--NTFHANLSSVPGEVGRSMYSFAISP-DGKEVYATVNPTQRLNDHYV  118 (346)
T ss_dssp             SCEEEECTTSSEEEEEETTTTEEEEEETTTTE--EEEEEESCCSTTEEEECSSCEEECT-TSSEEEEEEEEEEECSSCEE
T ss_pred             cceEEECCCCCEEEEEECCCCcEEEEeCccCe--eeeeecccccccccCCceEEEEEec-CCCEEEEEecCCcceeeeec
Confidence            78999999996666888899999999998887  343332221      2456788999 888776654           


Q ss_pred             -CCCcEEEEecCC
Q 021657          157 -ADNSVRMFDRRN  168 (309)
Q Consensus       157 -~dg~i~i~d~~~  168 (309)
                       .++.+.+||..+
T Consensus       119 ~~~~~i~~~~~~~  131 (346)
T d1jmxb_         119 VKPPRLEVFSTAD  131 (346)
T ss_dssp             ECCCEEEEEEGGG
T ss_pred             cCcceEEEEeccc
Confidence             355666666554

>d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: YVTN repeat
domain: Surface layer protein
species: Archaeon Methanosarcina mazei [TaxId: 2209]

Probab=99.83  E-value=1.7e-18  Score=133.99  Aligned_cols=245  Identities=11%  Similarity=0.122  Sum_probs=174.6

Q ss_pred             EEEecCCCcEEEEeCCccccccccCCc---cccccCCCCceeecCCCCCCCCcccCCCCCcCcccccccccCCeEEEEEe
Q 021657           24 VLSGGKDKSVVLWSIQDHITSSATDPA---TAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFC  100 (309)
Q Consensus        24 l~t~~~dg~i~vwd~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~  100 (309)
                      .++++.|++|.|||+++++........   ........+.... .....++.+.+|+..+.+.+..+..+.. +..+.|+
T Consensus         5 yV~~~~~~~v~v~D~~t~~~~~~i~~g~~p~~va~spdG~~l~-v~~~~~~~i~v~d~~t~~~~~~~~~~~~-~~~~~~~   82 (301)
T d1l0qa2           5 YIANSESDNISVIDVTSNKVTATIPVGSNPMGAVISPDGTKVY-VANAHSNDVSIIDTATNNVIATVPAGSS-PQGVAVS   82 (301)
T ss_dssp             EEEETTTTEEEEEETTTTEEEEEEECSSSEEEEEECTTSSEEE-EEEGGGTEEEEEETTTTEEEEEEECSSS-EEEEEEC
T ss_pred             EEEECCCCEEEEEECCCCeEEEEEECCCCceEEEEeCCCCEEE-EEECCCCEEEEEECCCCceeeeeecccc-ccccccc
Confidence            457789999999999988544332211   1112222222221 2234467799999999998888877664 6889999


Q ss_pred             cCCCcEEEEEcCCCeEEEEEcCCCCcceEEEeeccCCceeEEEeccCCCCeE-EEEcCCCcEEEEecCCCCCCCCCCcee
Q 021657          101 PSSAQEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLI-LTGSADNSVRMFDRRNLTSNGVGSPIN  179 (309)
Q Consensus       101 ~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l-~~~~~dg~i~i~d~~~~~~~~~~~~~~  179 (309)
                      +++...++++..++.+.+|+..+++  ....+. +.....++.++| ++..+ +++..++.+.+|+..+      ...+.
T Consensus        83 ~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~-~~~~~~~~~~~~-dg~~~~~~~~~~~~~~~~~~~~------~~~~~  152 (301)
T d1l0qa2          83 PDGKQVYVTNMASSTLSVIDTTSNT--VAGTVK-TGKSPLGLALSP-DGKKLYVTNNGDKTVSVINTVT------KAVIN  152 (301)
T ss_dssp             TTSSEEEEEETTTTEEEEEETTTTE--EEEEEE-CSSSEEEEEECT-TSSEEEEEETTTTEEEEEETTT------TEEEE
T ss_pred             cccccccccccccceeeecccccce--eeeecc-ccccceEEEeec-CCCeeeeeeccccceeeeeccc------cceee
Confidence            9997778888889999999998776  444444 445678999999 77655 5666788999999998      77777


Q ss_pred             eeccCCCCeeEEEEecCCCcEEEEecCCCcEEEEeCCcccccccCCCCCcCCCCceeeeecCCCcceeeEEEccCCCeEE
Q 021657          180 KFEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKVVDFHWNASDPWTV  259 (309)
Q Consensus       180 ~~~~~~~~v~~~~~~~~~~~l~~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~  259 (309)
                      .+.. ...+..++++|++..++++...++.+.+|+...               ....... .....+..+++++++..++
T Consensus       153 ~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~~~~-~~~~~~~~~~~~~~g~~~~  215 (301)
T d1l0qa2         153 TVSV-GRSPKGIAVTPDGTKVYVANFDSMSISVIDTVT---------------NSVIDTV-KVEAAPSGIAVNPEGTKAY  215 (301)
T ss_dssp             EEEC-CSSEEEEEECTTSSEEEEEETTTTEEEEEETTT---------------TEEEEEE-ECSSEEEEEEECTTSSEEE
T ss_pred             eccc-CCCceEEEeeccccceeeecccccccccccccc---------------eeeeecc-cccCCcceeeccccccccc
Confidence            7764 456788999999998776666677888888776               1222222 2345578899999999887


Q ss_pred             EEecCCCCCCCCCCeEEEEEccccccCChhhHhHhhhcccceEEEeeeCC
Q 021657          260 VSVSDDCDSTGGGGTLQIWRMSDLIYRPQDEVLAELEKFKAHVISCTSKP  309 (309)
Q Consensus       260 ~s~s~d~~s~~~dg~v~vw~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~P  309 (309)
                      ++..     +..++.|++||+.      +++.+..+.. ...+.+++|+|
T Consensus       216 v~~~-----~~~~~~v~v~D~~------t~~~~~~~~~-~~~~~~va~sp  253 (301)
T d1l0qa2         216 VTNV-----DKYFNTVSMIDTG------TNKITARIPV-GPDPAGIAVTP  253 (301)
T ss_dssp             EEEE-----CSSCCEEEEEETT------TTEEEEEEEC-CSSEEEEEECT
T ss_pred             cccc-----cceeeeeeeeecC------CCeEEEEEcC-CCCEEEEEEeC
Confidence            6553     2345899999998      6666666654 34578899987

>d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Putative isomerase YbhE
family: Putative isomerase YbhE
domain: Putative isomerase YbhE
species: Escherichia coli [TaxId: 562]

Probab=99.82  E-value=2e-18  Score=135.58  Aligned_cols=218  Identities=7%  Similarity=0.086  Sum_probs=139.0

Q ss_pred             CCCCcceEEEEECCCCCEEE-EecCCCcEEEEeCCccccccccCCccccccCCCCceeecCCCCCCCCcccCCCCCcCcc
Q 021657            6 GHQDNAEFALAMCPTEPYVL-SGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPR   84 (309)
Q Consensus         6 ~H~~~~V~~~~~~~~~~~l~-t~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   84 (309)
                      .|.+ .|..|+|+|||++|+ ++..|+.|++|++........                                     .
T Consensus        34 ~~~~-~v~~la~spDG~~L~v~~~~d~~i~~~~i~~~~~~~~-------------------------------------~   75 (333)
T d1ri6a_          34 DVPG-QVQPMVVSPDKRYLYVGVRPEFRVLAYRIAPDDGALT-------------------------------------F   75 (333)
T ss_dssp             ECSS-CCCCEEECTTSSEEEEEETTTTEEEEEEECTTTCCEE-------------------------------------E
T ss_pred             cCCC-CEeEEEEeCCCCEEEEEECCCCeEEEEEEeCCCCcEE-------------------------------------E
Confidence            4666 789999999999985 555689999999874311100                                     0


Q ss_pred             cccccccCCeEEEEEecCCCcEEEEEcCCCeEEEEEcCCCCcceEEEeeccCCceeEEEeccCCCCeEEEEcC-CCcEEE
Q 021657           85 GIYNGHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSA-DNSVRM  163 (309)
Q Consensus        85 ~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~-dg~i~i  163 (309)
                      .....+...+..++|+|+|+.+++++..++.|.+|+..............+...+.++.++| ++++++.++. +..|.+
T Consensus        76 ~~~~~~~~~p~~l~~spDg~~l~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~-d~~~~~~~~~~~~~i~~  154 (333)
T d1ri6a_          76 AAESALPGSLTHISTDHQGQFVFVGSYNAGNVSVTRLEDGLPVGVVDVVEGLDGCHSANISP-DNRTLWVPALKQDRICL  154 (333)
T ss_dssp             EEEEECSSCCSEEEECTTSSEEEEEETTTTEEEEEEEETTEEEEEEEEECCCTTBCCCEECT-TSSEEEEEEGGGTEEEE
T ss_pred             eeecccCCCceEEEEcCCCCEEeecccCCCceeeeccccccceecccccCCCccceEEEeee-cceeeeccccccceeeE
Confidence            11122345577899999994444444468899999987666434444556777889999999 8887776664 567888


Q ss_pred             EecCCCCCCCC----------------------CCc------------ee-------------eec------cCCCCeeE
Q 021657          164 FDRRNLTSNGV----------------------GSP------------IN-------------KFE------GHSAAVLC  190 (309)
Q Consensus       164 ~d~~~~~~~~~----------------------~~~------------~~-------------~~~------~~~~~v~~  190 (309)
                      |+.........                      +..            +.             ...      ........
T Consensus       155 ~~~~~~~~~~~~~~~~~~~~~g~~p~~i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  234 (333)
T d1ri6a_         155 FTVSDDGHLVAQDPAEVTTVEGAGPRHMVFHPNEQYAYCVNELNSSVDVWELKDPHGNIECVQTLDMMPENFSDTRWAAD  234 (333)
T ss_dssp             EEECTTSCEEEEEEEEEECSTTCCEEEEEECTTSSEEEEEETTTTEEEEEESSCTTSCCEEEEEEECSCTTCCSCCCEEE
T ss_pred             EEeccCCcceeeeceeeeeecCCCccEEEEeccceeEEeeccccCceEEEeecccccceeeeeeeeeeecCCCcccccee
Confidence            88765211000                      000            00             000      01123345


Q ss_pred             EEEecCCCcEEEEecCCCcEEEEeCCcccccccCCCCCcCCCCceeeeecCCCcceeeEEEccCCCeEEEEecCCCCCCC
Q 021657          191 VQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKVVDFHWNASDPWTVVSVSDDCDSTG  270 (309)
Q Consensus       191 ~~~~~~~~~l~~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~s~d~~s~~  270 (309)
                      ++++++++++++++..++.+.+|++...+..            ............+..++|+|+|++|+++++++     
T Consensus       235 ~~~s~d~~~~~~~~~~~~~~~~~~~~~~~~~------------~~~~~~~~~~~~p~~~a~spDGk~l~va~~~~-----  297 (333)
T d1ri6a_         235 IHITPDGRHLYACDRTASLITVFSVSEDGSV------------LSKEGFQPTETQPRGFNVDHSGKYLIAAGQKS-----  297 (333)
T ss_dssp             EEECTTSSEEEEEETTTTEEEEEEECTTSCC------------EEEEEEEECSSSCCCEEECTTSSEEEEECTTT-----
T ss_pred             EEEecccCceeeecccCCeEEEEEEcCCCCE------------EEEEEEeCCCCCeeEEEEeCCCCEEEEEECCC-----
Confidence            6677777777766677777777777653221            11222233445678899999999988766555     


Q ss_pred             CCCeEEEEEcc
Q 021657          271 GGGTLQIWRMS  281 (309)
Q Consensus       271 ~dg~v~vw~~~  281 (309)
                        +.|++|+++
T Consensus       298 --~~v~v~~id  306 (333)
T d1ri6a_         298 --HHISVYEIV  306 (333)
T ss_dssp             --CEEEEEEEE
T ss_pred             --CeEEEEEEE
Confidence              899999876

>d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.81  E-value=1.4e-18  Score=136.60  Aligned_cols=211  Identities=13%  Similarity=0.140  Sum_probs=137.5

Q ss_pred             ceEEEEECCCCCEE-EEecCCCcEEEEeCCccccccccCCccccccCCCCceeecCCCCCCCCcccCCCCCcCccccccc
Q 021657           11 AEFALAMCPTEPYV-LSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNG   89 (309)
Q Consensus        11 ~V~~~~~~~~~~~l-~t~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   89 (309)
                      .+.+++|+|||++| ++++.++.|.+||+.++........                                   .....
T Consensus        35 ~~~~i~~spDg~~l~v~~~~~~~v~v~D~~t~~~~~~~~~-----------------------------------~~~~~   79 (337)
T d1pbyb_          35 TPMVPMVAPGGRIAYATVNKSESLVKIDLVTGETLGRIDL-----------------------------------STPEE   79 (337)
T ss_dssp             CCCCEEECTTSSEEEEEETTTTEEEEEETTTCCEEEEEEC-----------------------------------CBTTE
T ss_pred             CccEEEECCCCCEEEEEECCCCeEEEEECCCCcEEEEEec-----------------------------------CCCcc
Confidence            46799999999987 5778899999999986533221111                                   00111


Q ss_pred             ccCCeEEEEEecCCCcEEEEEc------------CCCeEEEEEcCCCCcceEEEeeccCCceeEEEeccCCCCeEEEEcC
Q 021657           90 HEDTVEDVTFCPSSAQEFCSVG------------DDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSA  157 (309)
Q Consensus        90 ~~~~v~~~~~~~~~~~~l~s~~------------~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~  157 (309)
                      +...+..++|+|++ ..++++.            .++.+.+||..+++  ....+. +...+..++|+| ++.++++++.
T Consensus        80 ~~~~~~~v~~s~dg-~~l~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~--~~~~~~-~~~~~~~~~~s~-dg~~l~~~~~  154 (337)
T d1pbyb_          80 RVKSLFGAALSPDG-KTLAIYESPVRLELTHFEVQPTRVALYDAETLS--RRKAFE-APRQITMLAWAR-DGSKLYGLGR  154 (337)
T ss_dssp             EEECTTCEEECTTS-SEEEEEEEEEEECSSCEEECCCEEEEEETTTTE--EEEEEE-CCSSCCCEEECT-TSSCEEEESS
T ss_pred             cccceeeEEEcCCC-cEEEEeecCCcceeeeccccccceeeccccCCe--EEEecc-ccCCceEEEEcC-CCCEEEEEcC
Confidence            23345678999998 5555554            46788999998877  444444 456688999999 9999998865


Q ss_pred             CCcEEEEecCCCCCC---------------CC--------------------------------------------CC-c
Q 021657          158 DNSVRMFDRRNLTSN---------------GV--------------------------------------------GS-P  177 (309)
Q Consensus       158 dg~i~i~d~~~~~~~---------------~~--------------------------------------------~~-~  177 (309)
                      +  +.+||..+....               ..                                            +. .
T Consensus       155 ~--~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  232 (337)
T d1pbyb_         155 D--LHVMDPEAGTLVEDKPIQSWEAETYAQPDVLAVWNQHESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLETGEMA  232 (337)
T ss_dssp             S--EEEEETTTTEEEEEECSTTTTTTTBCCCBCCCCCCCCTTTTEEEEEEEEEBTTSCTTSGGGEEEEEEEEETTTCCEE
T ss_pred             C--cceeeeecCcEEEEeecCCccccceecCCcceeeccccccceeeeeeeeeeeccceeeecccCccEEEEEcCCCcEE
Confidence            4  677887652100               00                                            00 0


Q ss_pred             eeeeccCCCCeeEEEEecCCCcEEEEecCCCcEEEEeCCcccccccCCCCCcCCCCceeeeecCCCcceeeEEEccCCCe
Q 021657          178 INKFEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKVVDFHWNASDPW  257 (309)
Q Consensus       178 ~~~~~~~~~~v~~~~~~~~~~~l~~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~  257 (309)
                      ...+..+...+..++++|++.+++ .+  ++.+++||+.+               ...+... .+...+.+++|+|++.+
T Consensus       233 ~~~~~~~~~~~~~~~~~~~~~~~~-~~--~~~i~v~d~~~---------------~~~~~~~-~~~~~~~~~~~s~dG~~  293 (337)
T d1pbyb_         233 MREVRIMDVFYFSTAVNPAKTRAF-GA--YNVLESFDLEK---------------NASIKRV-PLPHSYYSVNVSTDGST  293 (337)
T ss_dssp             EEEEEECSSCEEEEEECTTSSEEE-EE--ESEEEEEETTT---------------TEEEEEE-ECSSCCCEEEECTTSCE
T ss_pred             EEEecCCCcceEEEEecccceEEE-Ec--cccEEEEECCC---------------CcEEEEE-cCCCCEEEEEECCCCCE
Confidence            001112333455667777777532 33  68999999987               2233333 35567899999999998


Q ss_pred             EEEEecCCCCCCCCCCeEEEEEccccccCChhhHhHhhh
Q 021657          258 TVVSVSDDCDSTGGGGTLQIWRMSDLIYRPQDEVLAELE  296 (309)
Q Consensus       258 ~~~s~s~d~~s~~~dg~v~vw~~~~~~~~~~~~~~~~~~  296 (309)
                      ++        +++.|+.|++||..      +.+.+.+++
T Consensus       294 l~--------v~~~~~~i~v~D~~------t~~~v~~i~  318 (337)
T d1pbyb_         294 VW--------LGGALGDLAAYDAE------TLEKKGQVD  318 (337)
T ss_dssp             EE--------EESBSSEEEEEETT------TCCEEEEEE
T ss_pred             EE--------EEeCCCcEEEEECC------CCcEEEEEE
Confidence            77        34445999999999      555555554

>d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.79  E-value=1e-17  Score=131.57  Aligned_cols=218  Identities=12%  Similarity=0.142  Sum_probs=146.3

Q ss_pred             CEEEEecCCCcEEEEeCCccccccccCCccccccCCCCceeecCCCCCCCCcccCCCCCcCcccccc--cccCCeEEEEE
Q 021657           22 PYVLSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYN--GHEDTVEDVTF   99 (309)
Q Consensus        22 ~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~v~~~~~   99 (309)
                      ++|++++.|++|+|||+++..                                        .+..+.  .+...+.+++|
T Consensus         2 ~~~vt~~~d~~v~v~D~~s~~----------------------------------------~~~~i~~~~~~~~~~~i~~   41 (337)
T d1pbyb_           2 DYILAPARPDKLVVIDTEKMA----------------------------------------VDKVITIADAGPTPMVPMV   41 (337)
T ss_dssp             EEEEEEETTTEEEEEETTTTE----------------------------------------EEEEEECTTCTTCCCCEEE
T ss_pred             eEEEEEcCCCEEEEEECCCCe----------------------------------------EEEEEECCCCCCCccEEEE
Confidence            589999999999999998542                                        233332  23456788999


Q ss_pred             ecCCCcEEEEEcCCCeEEEEEcCCCCcceEEEeeccC-----CceeEEEeccCCCCeEEEEc------------CCCcEE
Q 021657          100 CPSSAQEFCSVGDDSCLILWDARVGTSPVIKVEKAHD-----ADLHCVDWNPLDDNLILTGS------------ADNSVR  162 (309)
Q Consensus       100 ~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~-----~~v~~~~~~~~~~~~l~~~~------------~dg~i~  162 (309)
                      +|+|+.++++++.++.|.+||+.+++  .......+.     ..+..++|+| ++++++++.            .+..+.
T Consensus        42 spDg~~l~v~~~~~~~v~v~D~~t~~--~~~~~~~~~~~~~~~~~~~v~~s~-dg~~l~~~~~~~~~~~~~~~~~~~~~~  118 (337)
T d1pbyb_          42 APGGRIAYATVNKSESLVKIDLVTGE--TLGRIDLSTPEERVKSLFGAALSP-DGKTLAIYESPVRLELTHFEVQPTRVA  118 (337)
T ss_dssp             CTTSSEEEEEETTTTEEEEEETTTCC--EEEEEECCBTTEEEECTTCEEECT-TSSEEEEEEEEEEECSSCEEECCCEEE
T ss_pred             CCCCCEEEEEECCCCeEEEEECCCCc--EEEEEecCCCcccccceeeEEEcC-CCcEEEEeecCCcceeeecccccccee
Confidence            99995555788899999999999988  555544432     3456899999 888888776            457788


Q ss_pred             EEecCCCCCCCCCCceeeeccCCCCeeEEEEecCCCcEEEEecCCCcEEEEeCCcccccccC----CCCCc---------
Q 021657          163 MFDRRNLTSNGVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQ----GPRTT---------  229 (309)
Q Consensus       163 i~d~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~dg~i~iwd~~~~~~~~~~----~~~~~---------  229 (309)
                      +||..+      ++.+..+.. ...+..++|+|+|++++ +++  +.+.+||..........    .....         
T Consensus       119 ~~d~~~------~~~~~~~~~-~~~~~~~~~s~dg~~l~-~~~--~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~  188 (337)
T d1pbyb_         119 LYDAET------LSRRKAFEA-PRQITMLAWARDGSKLY-GLG--RDLHVMDPEAGTLVEDKPIQSWEAETYAQPDVLAV  188 (337)
T ss_dssp             EEETTT------TEEEEEEEC-CSSCCCEEECTTSSCEE-EES--SSEEEEETTTTEEEEEECSTTTTTTTBCCCBCCCC
T ss_pred             eccccC------CeEEEeccc-cCCceEEEEcCCCCEEE-EEc--CCcceeeeecCcEEEEeecCCccccceecCCccee
Confidence            999998      777777764 45678899999999865 555  34678887653211100    00000         


Q ss_pred             ---C-C---------------------------------CCc-eeeeecCCCcceeeEEEccCCCeEEEEecCCCCCCCC
Q 021657          230 ---N-Y---------------------------------PAG-LFFQHAGHRDKVVDFHWNASDPWTVVSVSDDCDSTGG  271 (309)
Q Consensus       230 ---~-~---------------------------------~~~-~~~~~~~~~~~v~~~~~~~~~~~~~~s~s~d~~s~~~  271 (309)
                         . .                                 ... ....+..+...+..+.++|++.+++..          
T Consensus       189 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------  258 (337)
T d1pbyb_         189 WNQHESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLETGEMAMREVRIMDVFYFSTAVNPAKTRAFGA----------  258 (337)
T ss_dssp             CCCCTTTTEEEEEEEEEBTTSCTTSGGGEEEEEEEEETTTCCEEEEEEEECSSCEEEEEECTTSSEEEEE----------
T ss_pred             eccccccceeeeeeeeeeeccceeeecccCccEEEEEcCCCcEEEEEecCCCcceEEEEecccceEEEEc----------
Confidence               0 0                                 000 011122344455666777766654421          


Q ss_pred             CCeEEEEEccccccCChhhHhHhhhcccceEEEeeeCC
Q 021657          272 GGTLQIWRMSDLIYRPQDEVLAELEKFKAHVISCTSKP  309 (309)
Q Consensus       272 dg~v~vw~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~P  309 (309)
                      ++.|++||+.      +++.+..+. +...+.+++|+|
T Consensus       259 ~~~i~v~d~~------~~~~~~~~~-~~~~~~~~~~s~  289 (337)
T d1pbyb_         259 YNVLESFDLE------KNASIKRVP-LPHSYYSVNVST  289 (337)
T ss_dssp             ESEEEEEETT------TTEEEEEEE-CSSCCCEEEECT
T ss_pred             cccEEEEECC------CCcEEEEEc-CCCCEEEEEECC
Confidence            3799999999      677766664 567788899987

>d2madh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]

Probab=99.77  E-value=1.2e-16  Score=127.42  Aligned_cols=261  Identities=7%  Similarity=-0.057  Sum_probs=155.1

Q ss_pred             ccCCCCCcceEEEEECCCCCEEEEec----------CCCcEEEEeCCccccccccCCcccc--ccCCCCceeecCC----
Q 021657            3 ILTGHQDNAEFALAMCPTEPYVLSGG----------KDKSVVLWSIQDHITSSATDPATAK--SAGSSGSIIKQSP----   66 (309)
Q Consensus         3 ~l~~H~~~~V~~~~~~~~~~~l~t~~----------~dg~i~vwd~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~----   66 (309)
                      ++.++..   ..++|+|||++|++++          .++.|++||..++............  ..........+..    
T Consensus        62 ~~~~~~~---~~~a~SpDG~~l~va~~~~~~~~~~~~~~~v~v~D~~t~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~  138 (373)
T d2madh_          62 HVNGGFL---PNPVAAHSGSEFALASTSFSRIAKGKRTDYVEVFDPVTFLPIADIELPDAPRFDVGPYSWMNANTPNNAD  138 (373)
T ss_pred             EEeCCCC---ccEEEcCCCCEEEEEeecCCcccccccceEEEEEECCCCcEEEEEecCCcceeEeccCCCcEEEEeCCCc
Confidence            3444444   3789999999998874          4678999999987543322111110  0000001111111    


Q ss_pred             -----CCCCCCcccCCCCCcCcccccccccCCeEEEEEecCCCcEEEEEcCCCeEEEEEcCCCCcceEEEeec------c
Q 021657           67 -----KPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPVIKVEKA------H  135 (309)
Q Consensus        67 -----~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~------~  135 (309)
                           ........+++....+.    ..+.....++.++|++...+++.+.|+.+.+|+....+  .......      .
T Consensus       139 ~~v~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~s~~g~~~~v~~~~dg~~~~~~~~~~~--~~~~~~~~~~~~~~  212 (373)
T d2madh_         139 LLFFQFAAGPAVGLVVQGGSSD----DQLLSSPTCYHIHPGAPSTFYLLCAQGGLAKTDHAGGA--AGAGLVGAMLTAAQ  212 (373)
T ss_pred             EEEEEEcCCCceEEeeccCCeE----EEEeccceeEEEecCCCcEEEEEcCCCeEEEEEcCCce--eeEEEeeeccccCc
Confidence                 11122333344333322    23444567889999997788899999999999988776  2322221      1


Q ss_pred             CCceeEEEeccCCCCeEEEEcCCCcEEEEecCCCCCCCCCCceeeeccC----------CCCeeEEEEecCCCcEE----
Q 021657          136 DADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGH----------SAAVLCVQWSPDKSSVF----  201 (309)
Q Consensus       136 ~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~----------~~~v~~~~~~~~~~~l~----  201 (309)
                      ......+.+.+ ++ .++..+.++.+.+|+.....    ...+......          ......+++++++..++    
T Consensus       213 ~~~~~~~~~~~-~~-~~~~~~~~~~v~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~  286 (373)
T d2madh_         213 NLLTQPAQANK-SG-RIVWPVYSGKILQADISAAG----ATNKAPIDALSGGRKADTWRPGGWQQVAYLKSSDGIYLLTS  286 (373)
T ss_pred             cceeeeEEECC-Cc-eEEEecCCceEEEEEcCCCe----EEEEEeeccccCcEEeeeeccCcceeeEEecCCCeEEEecC
Confidence            12233445555 44 45556678899999987632    1111111111          12334456666665433    


Q ss_pred             -----EEecCCCcEEEEeCCcccccccCCCCCcCCCCceeeeecCCCcceeeEEEccCCCeE-EEEecCCCCCCCCCCeE
Q 021657          202 -----GSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKVVDFHWNASDPWT-VVSVSDDCDSTGGGGTL  275 (309)
Q Consensus       202 -----~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~-~~s~s~d~~s~~~dg~v  275 (309)
                           +....++.+.+||...               .+.+..+ .+...+..++|+|++..+ +++++.       |+.|
T Consensus       287 ~~~~~~~~~~~~~v~~~d~~t---------------~~~~~~~-~~~~~~~~~a~spDG~~~l~vt~~~-------d~~v  343 (373)
T d2madh_         287 EQSAWKLHAAAKEVTSVTGLV---------------GQTSSQI-SLGHDVDAISVAQDGGPDLYALSAG-------TEVL  343 (373)
T ss_pred             CCceEEeecCCCeEEEEECCC---------------CcEEEEe-cCCCCeeEEEECCCCCEEEEEEeCC-------CCeE
Confidence                 3455667889999887               2223322 355678999999999864 454444       4999


Q ss_pred             EEEEccccccCChhhHhHhhhcccceEEEeee
Q 021657          276 QIWRMSDLIYRPQDEVLAELEKFKAHVISCTS  307 (309)
Q Consensus       276 ~vw~~~~~~~~~~~~~~~~~~~h~~~v~~~~~  307 (309)
                      ++||+.      +++.++++.++......++.
T Consensus       344 ~v~D~~------tg~~~~~~~~~g~~P~~l~~  369 (373)
T d2madh_         344 HIYDAG------AGDQDQSTVELGSGPQVLSV  369 (373)
T ss_pred             EEEECC------CCCEEEEECCCCCCCcEEEE
Confidence            999999      78888999877666666554

>d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.74  E-value=1e-16  Score=127.02  Aligned_cols=251  Identities=7%  Similarity=0.019  Sum_probs=145.3

Q ss_pred             EEEEECCCCCEEEEe----------cCCCcEEEEeCCccccccccCCc-----------cccccCCCCceeecCCCCCCC
Q 021657           13 FALAMCPTEPYVLSG----------GKDKSVVLWSIQDHITSSATDPA-----------TAKSAGSSGSIIKQSPKPGDG   71 (309)
Q Consensus        13 ~~~~~~~~~~~l~t~----------~~dg~i~vwd~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~   71 (309)
                      ..++|+|||++|++.          ..|+.|++||+.++.........           .............+.......
T Consensus        50 ~~~a~SpDg~~l~v~~~~~~~~~~g~~d~~v~v~D~~t~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~~~~  129 (355)
T d2bbkh_          50 PNPVVADDGSFIAHASTVFSRIARGERTDYVEVFDPVTLLPTADIELPDAPRFLVGTYPWMTSLTPDGKTLLFYQFSPAP  129 (355)
T ss_dssp             CEEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCCEEEEEEETTCCCCCBSCCGGGEEECTTSSEEEEEECSSSC
T ss_pred             CceEEcCCCCEEEEEeCCCccccccCCCCEEEEEECCCCCEEEEEecCCcceeecCCCCceEEEecCCCeeEEecCCCCc
Confidence            368999999988764          45889999999887433221100           011112222222233333445


Q ss_pred             CcccCCCCCcCcccccccccC-------CeEEEEEecCCCcEEEEEcCCCeEEEEEcCCCCcceEEEeeccCCceeEEEe
Q 021657           72 NDKAADGPSVGPRGIYNGHED-------TVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDW  144 (309)
Q Consensus        72 ~~~~~~~~~~~~~~~~~~~~~-------~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~  144 (309)
                      ...+++..+.+.+..+..+..       ....+.+++++..+++....++.+.+++.....       ..+...+....+
T Consensus       130 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~~~~v~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~  202 (355)
T d2bbkh_         130 AVGVVDLEGKAFKRMLDVPDCYHIFPTAPDTFFMHCRDGSLAKVAFGTEGTPEITHTEVFH-------PEDEFLINHPAY  202 (355)
T ss_dssp             EEEEEETTTTEEEEEEECCSEEEEEEEETTEEEEEETTSCEEEEECCSSSCCEEEECCCCS-------CTTSCBCSCCEE
T ss_pred             eeeeeecCCCcEeeEEecCCcceEeecCCcceEEEcCCCCEEEEEecCCCeEEEEeccccc-------ceecceeeeccc
Confidence            566777777666655543322       112234444443323333333334443332222       133445666778


Q ss_pred             ccCCCCeEEEEcCCCcEEEEecCCCCCCCCCCceeeeccC----------CCCeeEEEEecCCCcEEEEecC--------
Q 021657          145 NPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGH----------SAAVLCVQWSPDKSSVFGSSAE--------  206 (309)
Q Consensus       145 ~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~----------~~~v~~~~~~~~~~~l~~~~~~--------  206 (309)
                      .+ .+..++.++.++.+++|++....    ...+.....+          ......+++++++..+++....        
T Consensus       203 ~~-~~~~~~~~~~~~~~~v~~~~~~~----~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~d~~~~~~~~~~~~~~~~~~  277 (355)
T d2bbkh_         203 SQ-KAGRLVWPTYTGKIHQIDLSSGD----AKFLPAVEALTEAERADGWRPGGWQQVAYHRALDRIYLLVDQRDEWRHKT  277 (355)
T ss_dssp             ET-TTTEEEEEBTTSEEEEEECTTSS----CEECCCEESSCHHHHHTTEEECSSSCEEEETTTTEEEEEEEECCTTCTTS
T ss_pred             cC-CCCeEEEecCCCeEEEEecCCCc----EEEEeccCCcccceEeeeeeccceEEEEEeCCCCeEEEEeccCCceeecC
Confidence            87 78888888999999999998731    1111111111          1233458899999876644332        


Q ss_pred             -CCcEEEEeCCcccccccCCCCCcCCCCceeeeecCCCcceeeEEEccCCCe-EEEEecCCCCCCCCCCeEEEEEccccc
Q 021657          207 -DGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKVVDFHWNASDPW-TVVSVSDDCDSTGGGGTLQIWRMSDLI  284 (309)
Q Consensus       207 -dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~-~~~s~s~d~~s~~~dg~v~vw~~~~~~  284 (309)
                       ...|.+||..+.               +.+..+. +...+.+++|+|++.. ++++++.|       +.|++||+.   
T Consensus       278 ~~~~v~v~d~~t~---------------~~~~~~~-~~~~~~~~a~spDG~~~l~v~~~~d-------~~i~v~D~~---  331 (355)
T d2bbkh_         278 ASRFVVVLDAKTG---------------ERLAKFE-MGHEIDSINVSQDEKPLLYALSTGD-------KTLYIHDAE---  331 (355)
T ss_dssp             CEEEEEEEETTTC---------------CEEEEEE-EEEEECEEEECCSSSCEEEEEETTT-------TEEEEEETT---
T ss_pred             CCCeEEEEeCCCC---------------cEEEEec-CCCCEEEEEEcCCCCeEEEEEECCC-------CEEEEEECC---
Confidence             246999998872               2233332 3456889999999875 55654444       999999999   


Q ss_pred             cCChhhHhHhhhcccceEEE
Q 021657          285 YRPQDEVLAELEKFKAHVIS  304 (309)
Q Consensus       285 ~~~~~~~~~~~~~h~~~v~~  304 (309)
                         +++.++++.++...-..
T Consensus       332 ---tg~~~~~i~~~G~~p~~  348 (355)
T d2bbkh_         332 ---SGEELRSVNQLGHGPQV  348 (355)
T ss_dssp             ---TCCEEEEECCCCSSCCE
T ss_pred             ---CCCEEEEEeCcCCCccE
Confidence               78888888765443333

>d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Putative isomerase YbhE
family: Putative isomerase YbhE
domain: Putative isomerase YbhE
species: Escherichia coli [TaxId: 562]

Probab=99.72  E-value=1e-15  Score=119.94  Aligned_cols=200  Identities=8%  Similarity=0.144  Sum_probs=135.5

Q ss_pred             EEEEecCCCcEEEEeCCccccccccCCccccccCCCCceeecCCCCCCCCcccCCCCCcCcccccccccCCeEEEEEecC
Q 021657           23 YVLSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPS  102 (309)
Q Consensus        23 ~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~  102 (309)
                      .+++++.|++|+||+++...                                     ... +.....|.+.+..|+|+|+
T Consensus         6 v~v~~~~~~~I~v~~~~~~~-------------------------------------~l~-~~~~~~~~~~v~~la~spD   47 (333)
T d1ri6a_           6 VYIASPESQQIHVWNLNHEG-------------------------------------ALT-LTQVVDVPGQVQPMVVSPD   47 (333)
T ss_dssp             EEEEEGGGTEEEEEEECTTS-------------------------------------CEE-EEEEEECSSCCCCEEECTT
T ss_pred             EEEECCCCCcEEEEEEcCCC-------------------------------------CeE-EEEEEcCCCCEeEEEEeCC
Confidence            35788899999999987420                                     001 1122357788999999999


Q ss_pred             CCcEEEEEcCCCeEEEEEcCCCCcceEE-EeeccCCceeEEEeccCCCCeEEEEcC-CCcEEEEecCCCCCCCCCCceee
Q 021657          103 SAQEFCSVGDDSCLILWDARVGTSPVIK-VEKAHDADLHCVDWNPLDDNLILTGSA-DNSVRMFDRRNLTSNGVGSPINK  180 (309)
Q Consensus       103 ~~~~l~s~~~dg~i~iwd~~~~~~~~~~-~~~~~~~~v~~~~~~~~~~~~l~~~~~-dg~i~i~d~~~~~~~~~~~~~~~  180 (309)
                      |+.+++++..|+.|++|++......... ....+...+..++|+| ++++|++++. ++.|.+|+.....    ......
T Consensus        48 G~~L~v~~~~d~~i~~~~i~~~~~~~~~~~~~~~~~~p~~l~~sp-Dg~~l~v~~~~~~~v~~~~~~~~~----~~~~~~  122 (333)
T d1ri6a_          48 KRYLYVGVRPEFRVLAYRIAPDDGALTFAAESALPGSLTHISTDH-QGQFVFVGSYNAGNVSVTRLEDGL----PVGVVD  122 (333)
T ss_dssp             SSEEEEEETTTTEEEEEEECTTTCCEEEEEEEECSSCCSEEEECT-TSSEEEEEETTTTEEEEEEEETTE----EEEEEE
T ss_pred             CCEEEEEECCCCeEEEEEEeCCCCcEEEeeecccCCCceEEEEcC-CCCEEeecccCCCceeeecccccc----ceeccc
Confidence            9555567777999999999765532222 2233455678899999 9998888775 6789999887621    122233


Q ss_pred             eccCCCCeeEEEEecCCCcEEEEecCCCcEEEEeCCcccccccCCCCCcCCCCceeeeecCCCcceeeEEEccCCCeEEE
Q 021657          181 FEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKVVDFHWNASDPWTVV  260 (309)
Q Consensus       181 ~~~~~~~v~~~~~~~~~~~l~~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~  260 (309)
                      ...+...+.++.++|+++++++....+..+.+|+.........         ................++|++++..++.
T Consensus       123 ~~~~~~~~~~v~~s~d~~~~~~~~~~~~~i~~~~~~~~~~~~~---------~~~~~~~~~~g~~p~~i~~~~~~~~~~~  193 (333)
T d1ri6a_         123 VVEGLDGCHSANISPDNRTLWVPALKQDRICLFTVSDDGHLVA---------QDPAEVTTVEGAGPRHMVFHPNEQYAYC  193 (333)
T ss_dssp             EECCCTTBCCCEECTTSSEEEEEEGGGTEEEEEEECTTSCEEE---------EEEEEEECSTTCCEEEEEECTTSSEEEE
T ss_pred             ccCCCccceEEEeeecceeeeccccccceeeEEEeccCCccee---------eeceeeeeecCCCccEEEEeccceeEEe
Confidence            3445667889999999998877777778899999876332211         0011112233455678999999888777


Q ss_pred             EecCCCCCCCCCCeEEEEEcc
Q 021657          261 SVSDDCDSTGGGGTLQIWRMS  281 (309)
Q Consensus       261 s~s~d~~s~~~dg~v~vw~~~  281 (309)
                      +....       +...+|+..
T Consensus       194 ~~~~~-------~~~~v~~~~  207 (333)
T d1ri6a_         194 VNELN-------SSVDVWELK  207 (333)
T ss_dssp             EETTT-------TEEEEEESS
T ss_pred             ecccc-------CceEEEeec
Confidence            65544       677787765

>d2madh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]

Probab=99.60  E-value=2.5e-13  Score=107.92  Aligned_cols=156  Identities=15%  Similarity=0.026  Sum_probs=109.8

Q ss_pred             CCCCCcceEEEEECCCCCEEEEe-----cCCCcEEEEeCCccccccccCCccccccCCCCceeecCCCCCCCCcccCCCC
Q 021657            5 TGHQDNAEFALAMCPTEPYVLSG-----GKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGP   79 (309)
Q Consensus         5 ~~H~~~~V~~~~~~~~~~~l~t~-----~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   79 (309)
                      .+|.+ ++..++++|||+.++..     +.++.|.+||.+++                                      
T Consensus        17 ~~~~~-p~~~~a~spdg~~~~~~~~~~~~~~~~v~v~D~~tg--------------------------------------   57 (373)
T d2madh_          17 GAADG-PTNDEAPGADGRRSYINLPAHHSAIIQQWVLDAGSG--------------------------------------   57 (373)
T ss_pred             ccCCC-CccccccCCCCCEEEEEcccccCCCceEEEEECCCC--------------------------------------
Confidence            45677 88999999999998754     23467888887643                                      


Q ss_pred             CcCcccccccccCCeEEEEEecCCCcEEEEEc----------CCCeEEEEEcCCCCcceEEEeeccCCce-------eEE
Q 021657           80 SVGPRGIYNGHEDTVEDVTFCPSSAQEFCSVG----------DDSCLILWDARVGTSPVIKVEKAHDADL-------HCV  142 (309)
Q Consensus        80 ~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~----------~dg~i~iwd~~~~~~~~~~~~~~~~~~v-------~~~  142 (309)
                        +.+..+..+..+  .+.|+||| ++|++++          .++.|.+||..+++  .......+....       ..+
T Consensus        58 --~~~~~~~~~~~~--~~a~SpDG-~~l~va~~~~~~~~~~~~~~~v~v~D~~t~~--~~~~~~~~~~~~~~~~~~~~~~  130 (373)
T d2madh_          58 --SILGHVNGGFLP--NPVAAHSG-SEFALASTSFSRIAKGKRTDYVEVFDPVTFL--PIADIELPDAPRFDVGPYSWMN  130 (373)
T ss_pred             --CEEEEEeCCCCc--cEEEcCCC-CEEEEEeecCCcccccccceEEEEEECCCCc--EEEEEecCCcceeEeccCCCcE
Confidence              334444444433  68999999 5566553          46889999999888  455544444332       457


Q ss_pred             EeccCCCCeEEEE--cCCCcEEEEecCCCCCCCCCCceeeeccCCCCeeEEEEecCCCcEEEEecCCCcEEEEeCCc
Q 021657          143 DWNPLDDNLILTG--SADNSVRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEK  217 (309)
Q Consensus       143 ~~~~~~~~~l~~~--~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~dg~i~iwd~~~  217 (309)
                      .|++ +++.++..  ..++.+.+|+...      .+.....    ....++.++|+++.++++.+.|+.+.+|+...
T Consensus       131 ~~s~-dg~~~~v~~~~~~~~~~~~~~~~------~~~~~~~----~~~~~~~~s~~g~~~~v~~~~dg~~~~~~~~~  196 (373)
T d2madh_         131 ANTP-NNADLLFFQFAAGPAVGLVVQGG------SSDDQLL----SSPTCYHIHPGAPSTFYLLCAQGGLAKTDHAG  196 (373)
T ss_pred             EEEe-CCCcEEEEEEcCCCceEEeeccC------CeEEEEe----ccceeEEEecCCCcEEEEEcCCCeEEEEEcCC
Confidence            7888 67655444  3456788888776      4443333    34567899999998888999999999999887

>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Pseudomonas putida [TaxId: 303]

Probab=99.58  E-value=5.4e-14  Score=110.34  Aligned_cols=111  Identities=13%  Similarity=0.077  Sum_probs=84.6

Q ss_pred             EEEecCCCcEEEEEcCCCeEEEEEcCCCCcceEEEee-ccCCceeEEEeccCCCCeE-EEEcCCCcEEEEecCCCCCCCC
Q 021657           97 VTFCPSSAQEFCSVGDDSCLILWDARVGTSPVIKVEK-AHDADLHCVDWNPLDDNLI-LTGSADNSVRMFDRRNLTSNGV  174 (309)
Q Consensus        97 ~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~~l-~~~~~dg~i~i~d~~~~~~~~~  174 (309)
                      ++|++++ .+|++++.|+.|.+||+.+++  ....+. .+...+.+++|+| +++++ +++..++.|++||+.+      
T Consensus         2 ~a~~~~~-~~l~~~~~~~~v~v~D~~t~~--~~~t~~~~~~~~p~~l~~sp-DG~~l~v~~~~~~~v~~~d~~t------   71 (346)
T d1jmxb_           2 PALKAGH-EYMIVTNYPNNLHVVDVASDT--VYKSCVMPDKFGPGTAMMAP-DNRTAYVLNNHYGDIYGIDLDT------   71 (346)
T ss_dssp             CCCCTTC-EEEEEEETTTEEEEEETTTTE--EEEEEECSSCCSSCEEEECT-TSSEEEEEETTTTEEEEEETTT------
T ss_pred             ccCCCCC-cEEEEEcCCCEEEEEECCCCC--EEEEEEcCCCCCcceEEECC-CCCEEEEEECCCCcEEEEeCcc------
Confidence            4678887 899999999999999999887  566654 4566788999999 88876 5666789999999998      


Q ss_pred             CCceeeeccCC------CCeeEEEEecCCCcEEEEec-----------CCCcEEEEeCCc
Q 021657          175 GSPINKFEGHS------AAVLCVQWSPDKSSVFGSSA-----------EDGLLNIWDYEK  217 (309)
Q Consensus       175 ~~~~~~~~~~~------~~v~~~~~~~~~~~l~~~~~-----------~dg~i~iwd~~~  217 (309)
                      ++.+..+....      ..+..++|+|||++++++..           .++.+.+|+...
T Consensus        72 ~~~~~~~~~~~~~~~~~~~~~~v~~s~DG~~l~v~~~~~~~~~~~~~~~~~~i~~~~~~~  131 (346)
T d1jmxb_          72 CKNTFHANLSSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTAD  131 (346)
T ss_dssp             TEEEEEEESCCSTTEEEECSSCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEEGGG
T ss_pred             CeeeeeecccccccccCCceEEEEEecCCCEEEEEecCCcceeeeeccCcceEEEEeccc
Confidence            77776665332      23567899999987654432           466677777654

>d2hqsa1 b.68.4.1 (A:163-431) TolB, C-terminal domain {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: TolB, C-terminal domain
family: TolB, C-terminal domain
domain: TolB, C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=99.53  E-value=3.8e-12  Score=96.31  Aligned_cols=227  Identities=12%  Similarity=0.068  Sum_probs=138.0

Q ss_pred             CCCCcceEEEEECCCCCEEEEec-CCCc--EEEEeCCccccccccCCccccccCCCCceeecCCCCCCCCcccCCCCCcC
Q 021657            6 GHQDNAEFALAMCPTEPYVLSGG-KDKS--VVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVG   82 (309)
Q Consensus         6 ~H~~~~V~~~~~~~~~~~l~t~~-~dg~--i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   82 (309)
                      .+.. .+...+|||||+.||-.. ..+.  +.+.+....                                         
T Consensus        36 ~~~~-~~~sP~wSPDGk~IAf~~~~~~~~~~~~~~~~~~-----------------------------------------   73 (269)
T d2hqsa1          36 RSPQ-PLMSPAWSPDGSKLAYVTFESGRSALVIQTLANG-----------------------------------------   73 (269)
T ss_dssp             EESS-CEEEEEECTTSSEEEEEECTTSSCEEEEEETTTC-----------------------------------------
T ss_pred             cCCC-ceeeeEECCCCCEEEEEEeeccCcceeeeecccC-----------------------------------------
Confidence            3444 577899999999998543 3333  444443321                                         


Q ss_pred             cccccccccCCeEEEEEecCCCcEEEEEcCCCeEEEEEcCCCCcceEEEeeccCCceeEEEeccCCCCeEEEEcCCCcEE
Q 021657           83 PRGIYNGHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVR  162 (309)
Q Consensus        83 ~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~  162 (309)
                      ....+..+........|+|+|..++.....++...++....... ................+++.....+++...+|...
T Consensus        74 ~~~~~~~~~~~~~~~~~spdg~~i~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~  152 (269)
T d2hqsa1          74 AVRQVASFPRHNGAPAFSPDGSKLAFALSKTGSLNLYVMDLASG-QIRQVTDGRSNNTEPTWFPDSQNLAFTSDQAGRPQ  152 (269)
T ss_dssp             CEEEEECCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTC-CEEECCCCSSCEEEEEECTTSSEEEEEECTTSSCE
T ss_pred             ceeEEeeeecccccceecCCCCeeeEeeecCCccceeecccccc-cceeeeeccccccccccccccccceecccccCCce
Confidence            12334456677888999999966555555555544444433332 12333334444455567773344555555566544


Q ss_pred             --EEecCCCCCCCCCCceeeeccCCCCeeEEEEecCCCcEEEEecCCCcEEEEeCCcccccccCCCCCcCCCCceeeeec
Q 021657          163 --MFDRRNLTSNGVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHA  240 (309)
Q Consensus       163 --i~d~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~  240 (309)
                        +.++..       .....+...........|+|++..++.....++...+|........               ....
T Consensus       153 i~~~~~~~-------~~~~~~~~~~~~~~~~~~spdg~~~~~~~~~~~~~~i~~~~~~~~~---------------~~~~  210 (269)
T d2hqsa1         153 VYKVNING-------GAPQRITWEGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGG---------------VQVL  210 (269)
T ss_dssp             EEEEETTS-------SCCEECCCSSSEEEEEEECTTSSEEEEEEECSSCEEEEEEETTTCC---------------EEEC
T ss_pred             Eeeeeccc-------ccceeeecccccccccccccccceeEEEeecCCceeeeEeeccccc---------------ceEe
Confidence              445443       2333344455667788999999988777777777777666542211               1222


Q ss_pred             CCCcceeeEEEccCCCeEEEEecCCCCCCCCCCeEEEEEccccccCChhhHhHhhhcccceEEEeeeCC
Q 021657          241 GHRDKVVDFHWNASDPWTVVSVSDDCDSTGGGGTLQIWRMSDLIYRPQDEVLAELEKFKAHVISCTSKP  309 (309)
Q Consensus       241 ~~~~~v~~~~~~~~~~~~~~s~s~d~~s~~~dg~v~vw~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~P  309 (309)
                      .+........|+|+|.+|+.+....     ....|+++++.      .+ ....+....+.+...+|+|
T Consensus       211 ~~~~~~~~p~~SPDG~~i~f~s~~~-----~~~~l~~~~~d------g~-~~~~lt~~~g~~~~p~WSP  267 (269)
T d2hqsa1         211 SSTFLDETPSLAPNGTMVIYSSSQG-----MGSVLNLVSTD------GR-FKARLPATDGQVKFPAWSP  267 (269)
T ss_dssp             CCSSSCEEEEECTTSSEEEEEEEET-----TEEEEEEEETT------SC-CEEECCCSSSEEEEEEECC
T ss_pred             ecCccccceEECCCCCEEEEEEcCC-----CCcEEEEEECC------CC-CEEEEeCCCCcEEeEEeCC
Confidence            3444567789999999887765432     33678899987      23 3455666678889999998

>d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.53  E-value=1.8e-13  Score=108.75  Aligned_cols=216  Identities=11%  Similarity=-0.013  Sum_probs=119.3

Q ss_pred             EEEECCCCCEEEEe----------cCCCcEEEEeCCccccccccCCccccccCCCCceeecCCCCCCCCcccCCCCCcCc
Q 021657           14 ALAMCPTEPYVLSG----------GKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGP   83 (309)
Q Consensus        14 ~~~~~~~~~~l~t~----------~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   83 (309)
                      .++|+|||+.|++.          +.|+.|++||..+.........                             .... 
T Consensus        69 ~~a~spDg~~i~~~~~~~~~~~~g~~d~~v~v~D~~t~~~~~~i~~-----------------------------p~~~-  118 (368)
T d1mdah_          69 LAVAGHSGSDFALASTSFARSAKGKRTDYVEVFDPVTFLPIADIEL-----------------------------PDAP-  118 (368)
T ss_dssp             EEEECTTSSCEEEEEEEETTTTSSSEEEEEEEECTTTCCEEEEEEE-----------------------------TTSC-
T ss_pred             cceECCCCCEEEEEcccCccccccccCCeEEEEECCCCcEeeeecC-----------------------------Cccc-
Confidence            57899999988864          3578899999986432211100                             0000 


Q ss_pred             ccccccccCCeEEEEEecCCCcEEEEEcCCCeEEEEEcCCCCcceEEEeeccCCceeEEEeccCCCCeEEEEcCCCcEEE
Q 021657           84 RGIYNGHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRM  163 (309)
Q Consensus        84 ~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i  163 (309)
                         ..........++|+|||+.++++...++.+.+||+.+++  .......+....    +.|.....++..+.||.+.+
T Consensus       119 ---~~~~g~~p~~~a~SpDGk~l~va~~~~~~v~~~d~~~~~--~~~~~~~~~~~~----~~~~~~~~~v~~~~Dg~~~~  189 (368)
T d1mdah_         119 ---RFSVGPRVHIIGNCASSACLLFFLFGSSAAAGLSVPGAS--DDQLTKSASCFH----IHPGAAATHYLGSCPASLAA  189 (368)
T ss_dssp             ---SCCBSCCTTSEEECTTSSCEEEEECSSSCEEEEEETTTE--EEEEEECSSCCC----CEEEETTEEECCCCTTSCEE
T ss_pred             ---eecccCCccceEECCCCCEEEEEeCCCCeEEEEECCCCc--EeEEeeccCcce----EccCCCceEEEEcCCCCEEE
Confidence               000111234589999995544555578999999998877  444443332221    11112334444445555555


Q ss_pred             EecCCCCCCC----------------------C------------------CCcee--eecc----------CCCCeeEE
Q 021657          164 FDRRNLTSNG----------------------V------------------GSPIN--KFEG----------HSAAVLCV  191 (309)
Q Consensus       164 ~d~~~~~~~~----------------------~------------------~~~~~--~~~~----------~~~~v~~~  191 (309)
                      +++.......                      .                  .....  ....          .......+
T Consensus       190 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~  269 (368)
T d1mdah_         190 SDLAAAPAAAGIVGAQCTGAQNCSSQAAQANYPGMLVWAVASSILQGDIPAAGATMKAAIDGNESGRKADNFRSAGFQMV  269 (368)
T ss_dssp             EECCSSCCCCEECCCCSCTTSCBCSCCEEETTTTEEEECBSSCCEEEECCSSCCEEECCCCSSCTHHHHTTEEECSSSCE
T ss_pred             EEecCCceeeeeeecccccccccceeecccccCcEEEEecCCCEEEEeecCCceEEEeecccccceeeeeeecCCCceeE
Confidence            5443211000                      0                  00000  0000          00112346


Q ss_pred             EEecCCCcEEEEecCC--------CcEEEEeCCcccccccCCCCCcCCCCceeeeecCCCcceeeEEEccCCC-eEEEEe
Q 021657          192 QWSPDKSSVFGSSAED--------GLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKVVDFHWNASDP-WTVVSV  262 (309)
Q Consensus       192 ~~~~~~~~l~~~~~~d--------g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~~~~s~  262 (309)
                      ++++++..+++....+        ..|.+||..+.               +.+..+. +...+.+++|+|++. .++++.
T Consensus       270 a~~~~~~~~~v~~~~~~~~~~~~~~~v~v~D~~t~---------------~~~~~~~-~~~~~~~~a~spDG~~~ly~s~  333 (368)
T d1mdah_         270 AKLKNTDGIMILTVEHSRSCLAAAENTSSVTASVG---------------QTSGPIS-NGHDSDAIIAAQDGASDNYANS  333 (368)
T ss_dssp             EEETTTTEEEEEEEECSSCTTSCEEEEEEEESSSC---------------CEEECCE-EEEEECEEEECCSSSCEEEEEE
T ss_pred             EEcCCCCEEEEEecCCCceeecCCceEEEEECCCC---------------cEeEEec-CCCceeEEEECCCCCEEEEEEe
Confidence            7788877665443222        35888888772               2222222 345688999999986 466655


Q ss_pred             cCCCCCCCCCCeEEEEEccccccCChhhHhHhhhc
Q 021657          263 SDDCDSTGGGGTLQIWRMSDLIYRPQDEVLAELEK  297 (309)
Q Consensus       263 s~d~~s~~~dg~v~vw~~~~~~~~~~~~~~~~~~~  297 (309)
                      +.|       +.|++||..      +++.+.+++-
T Consensus       334 ~~~-------~~v~v~D~~------tgk~~~~i~~  355 (368)
T d1mdah_         334 AGT-------EVLDIYDAA------SDQDQSSVEL  355 (368)
T ss_dssp             TTT-------TEEEEEESS------SCEEEEECCC
T ss_pred             CCC-------CeEEEEECC------CCCEEEEEEC
Confidence            555       999999998      6777777763

>d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.50  E-value=1.7e-13  Score=108.07  Aligned_cols=191  Identities=13%  Similarity=0.134  Sum_probs=115.9

Q ss_pred             EEEEECCCCCEEEEe--cCCCcEEEEeCCccccccccCCcc--ccccCCCCceeecCCC--------CCCCCcccCCCCC
Q 021657           13 FALAMCPTEPYVLSG--GKDKSVVLWSIQDHITSSATDPAT--AKSAGSSGSIIKQSPK--------PGDGNDKAADGPS   80 (309)
Q Consensus        13 ~~~~~~~~~~~l~t~--~~dg~i~vwd~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~   80 (309)
                      ..++|+|++++++.+  +.+..+.+|+..+...........  ............+...        .........+...
T Consensus       109 ~~~~~s~dg~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~~~~v~~~~~~~~~~~~~~~  188 (355)
T d2bbkh_         109 WMTSLTPDGKTLLFYQFSPAPAVGVVDLEGKAFKRMLDVPDCYHIFPTAPDTFFMHCRDGSLAKVAFGTEGTPEITHTEV  188 (355)
T ss_dssp             GGEEECTTSSEEEEEECSSSCEEEEEETTTTEEEEEEECCSEEEEEEEETTEEEEEETTSCEEEEECCSSSCCEEEECCC
T ss_pred             ceEEEecCCCeeEEecCCCCceeeeeecCCCcEeeEEecCCcceEeecCCcceEEEcCCCCEEEEEecCCCeEEEEeccc
Confidence            457899999987765  456789999998774332211110  0000111111111100        0011111111111


Q ss_pred             cCcccccccccCCeEEEEEecCCCcEEEEEcCCCeEEEEEcCCCCcceEEEeeccC----------CceeEEEeccCCCC
Q 021657           81 VGPRGIYNGHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPVIKVEKAHD----------ADLHCVDWNPLDDN  150 (309)
Q Consensus        81 ~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~----------~~v~~~~~~~~~~~  150 (309)
                      .     ...+...+....+.+++ ..++.++.++.+.+|++..++.........+.          .....+++++ ++.
T Consensus       189 ~-----~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~-d~~  261 (355)
T d2bbkh_         189 F-----HPEDEFLINHPAYSQKA-GRLVWPTYTGKIHQIDLSSGDAKFLPAVEALTEAERADGWRPGGWQQVAYHR-ALD  261 (355)
T ss_dssp             C-----SCTTSCBCSCCEEETTT-TEEEEEBTTSEEEEEECTTSSCEECCCEESSCHHHHHTTEEECSSSCEEEET-TTT
T ss_pred             c-----cceecceeeeccccCCC-CeEEEecCCCeEEEEecCCCcEEEEeccCCcccceEeeeeeccceEEEEEeC-CCC
Confidence            1     11233445566777777 67888899999999999877632222222221          2334678888 777


Q ss_pred             eEEEEcCC----------CcEEEEecCCCCCCCCCCceeeeccCCCCeeEEEEecCCCc-EEEEecCCCcEEEEeCCc
Q 021657          151 LILTGSAD----------NSVRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWSPDKSS-VFGSSAEDGLLNIWDYEK  217 (309)
Q Consensus       151 ~l~~~~~d----------g~i~i~d~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~-l~~~~~~dg~i~iwd~~~  217 (309)
                      .++....+          ..|.+||..+      ++.+..+.. ...+.+++|+|||+. ++++++.|+.|++||+++
T Consensus       262 ~~~~~~~~~~~~~~~~~~~~v~v~d~~t------~~~~~~~~~-~~~~~~~a~spDG~~~l~v~~~~d~~i~v~D~~t  332 (355)
T d2bbkh_         262 RIYLLVDQRDEWRHKTASRFVVVLDAKT------GERLAKFEM-GHEIDSINVSQDEKPLLYALSTGDKTLYIHDAES  332 (355)
T ss_dssp             EEEEEEEECCTTCTTSCEEEEEEEETTT------CCEEEEEEE-EEEECEEEECCSSSCEEEEEETTTTEEEEEETTT
T ss_pred             eEEEEeccCCceeecCCCCeEEEEeCCC------CcEEEEecC-CCCEEEEEEcCCCCeEEEEEECCCCEEEEEECCC
Confidence            76665433          3699999998      788877763 456889999999985 567788899999999988

>d1qnia2 b.69.3.1 (A:10-450) Nitrous oxide reductase, N-terminal domain {Pseudomonas nautica [TaxId: 2743]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nitrous oxide reductase, N-terminal domain
family: Nitrous oxide reductase, N-terminal domain
domain: Nitrous oxide reductase, N-terminal domain
species: Pseudomonas nautica [TaxId: 2743]

Probab=99.44  E-value=5.1e-13  Score=106.22  Aligned_cols=212  Identities=8%  Similarity=0.019  Sum_probs=131.1

Q ss_pred             CCCCcceEEEEECCCCCEEEE-ecCCCcEEEEeCCccccccccCCccccccCCCCceeecCCCCCCCCcccCCCCCcCcc
Q 021657            6 GHQDNAEFALAMCPTEPYVLS-GGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPR   84 (309)
Q Consensus         6 ~H~~~~V~~~~~~~~~~~l~t-~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   84 (309)
                      .|.. ......++|||++|+. ...+++|.++|+++.+.                                        .
T Consensus        69 ~hhP-~~s~t~gtpDGr~lfV~d~~~~rVavIDl~t~k~----------------------------------------~  107 (441)
T d1qnia2          69 CHHP-HISMTDGRYDGKYLFINDKANTRVARIRLDIMKT----------------------------------------D  107 (441)
T ss_dssp             BCCC-EEEEETTEEEEEEEEEEETTTTEEEEEETTTTEE----------------------------------------E
T ss_pred             ccCC-CcceecccCCCCEEEEEcCCCCEEEEEECCCCcE----------------------------------------e
Confidence            3555 5667777899999854 56788999999985422                                        2


Q ss_pred             cccc-cccCCeEEEEEecCCCcEEEEEcCCCeE------------------EEEEcCCCCcceEEEeeccCCceeEEEec
Q 021657           85 GIYN-GHEDTVEDVTFCPSSAQEFCSVGDDSCL------------------ILWDARVGTSPVIKVEKAHDADLHCVDWN  145 (309)
Q Consensus        85 ~~~~-~~~~~v~~~~~~~~~~~~l~s~~~dg~i------------------~iwd~~~~~~~~~~~~~~~~~~v~~~~~~  145 (309)
                      ..+. .+...+..++|+|+++..++++..+..+                  ..+|..+.+  ....... ......+.++
T Consensus       108 ~ii~iP~g~gphgi~~spdg~t~YV~~~~~~~v~~~~dg~~~~~~~~~~~~~~iD~~t~~--v~~qI~v-~~~p~~v~~s  184 (441)
T d1qnia2         108 KITHIPNVQAIHGLRLQKVPKTNYVFCNAEFVIPQPNDGTDFSLDNSYTMFTAIDAETMD--VAWQVIV-DGNLDNTDAD  184 (441)
T ss_dssp             EEEECTTCCCEEEEEECCSSBCCEEEEEECSCEESSCSSSCCCGGGEEEEEEEEETTTCS--EEEEEEE-SSCCCCEEEC
T ss_pred             eEEecCCCCCccceEEeccCCEEEEEeccCCcccccCcccccccccccceEEeecCccce--eeEEEec-CCCccceEEC
Confidence            2221 2456788999999985434443333223                  457777666  3333332 3457889999


Q ss_pred             cCCCCeEEEEcCCC-----------------------------------------cEEEEecCCCCCCCCCCceeeeccC
Q 021657          146 PLDDNLILTGSADN-----------------------------------------SVRMFDRRNLTSNGVGSPINKFEGH  184 (309)
Q Consensus       146 ~~~~~~l~~~~~dg-----------------------------------------~i~i~d~~~~~~~~~~~~~~~~~~~  184 (309)
                      | +++++++.+.+.                                         .+.+++...      .+.+..+...
T Consensus       185 p-dGk~a~vt~~nse~~~~id~~t~~~~d~i~v~n~p~~~~~~~dGk~~~v~~~~v~vvd~~~~------~~v~~~IPvg  257 (441)
T d1qnia2         185 Y-TGKYATSTCYNSERAVDLAGTMRNDRDWVVVFNVERIAAAVKAGNFKTIGDSKVPVVDGRGE------SEFTRYIPVP  257 (441)
T ss_dssp             S-SSSEEEEEESCTTCCSSHHHHTCSSBCEEEEEEHHHHHHHHHTTCCBCCTTCCCCEEECSSS------CSSEEEECCB
T ss_pred             C-CCCEEEEEecCCCceEEEeccCcceEEEEEeCCccceEEEecCCCEEEeCCCCcEEEEcccC------CceEEEEeCC
Confidence            9 888887776432                                         233333332      3445555544


Q ss_pred             CCCeeEEEEecCCCcEEEEecCCCcEEEEeCCcccccccCCCCCcCCCCceeeeecCCCcceeeEEEccCCCeEEEEecC
Q 021657          185 SAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKVVDFHWNASDPWTVVSVSD  264 (309)
Q Consensus       185 ~~~v~~~~~~~~~~~l~~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~s~  264 (309)
                      +. ...+.++|||+++++++..+++|.+||+.+..+.......    ....+.......-.....+|++++ +.+.+.+.
T Consensus       258 ks-PhGv~vSPDGkyl~~~~~~~~tvsv~d~~k~~~~~~~~~~----~~~~~~~~~~~glgplh~~fd~~g-~~yts~~~  331 (441)
T d1qnia2         258 KN-PHGLNTSPDGKYFIANGKLSPTVSVIAIDKLDDLFEDKIE----LRDTIVAEPELGLGPLHTTFDGRG-NAYTTLFI  331 (441)
T ss_dssp             SS-CCCEEECTTSCEEEEECTTSSBEEEEEGGGHHHHTTTSSC----GGGGEEECCBCCSCEEEEEECSSS-EEEEEETT
T ss_pred             CC-ccCceECCCCCEEEEeCCcCCcEEEEEeehhhhHhhccCC----cceEEEeecccccCcccceecCCc-eEEEcccc
Confidence            44 4679999999999999999999999999874433221100    011111111112233556899866 45654444


Q ss_pred             CCCCCCCCCeEEEEEcc
Q 021657          265 DCDSTGGGGTLQIWRMS  281 (309)
Q Consensus       265 d~~s~~~dg~v~vw~~~  281 (309)
                             |+.|..|++.
T Consensus       332 -------ds~v~kw~~~  341 (441)
T d1qnia2         332 -------DSQVCKWNIA  341 (441)
T ss_dssp             -------TTEEEEEEHH
T ss_pred             -------cceEEEeccc
Confidence                   4999999986

>d2bgra1 b.70.3.1 (A:39-508) Dipeptidyl peptidase IV/CD26, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: DPP6 N-terminal domain-like
family: DPP6 N-terminal domain-like
domain: Dipeptidyl peptidase IV/CD26, N-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=99.44  E-value=7.1e-12  Score=102.70  Aligned_cols=109  Identities=9%  Similarity=0.112  Sum_probs=77.9

Q ss_pred             ccCCCCCcceEEEEECCCCCEEEEecC---------CCcEEEEeCCccccccccCCccccccCCCCceeecCCCCCCCCc
Q 021657            3 ILTGHQDNAEFALAMCPTEPYVLSGGK---------DKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGND   73 (309)
Q Consensus         3 ~l~~H~~~~V~~~~~~~~~~~l~t~~~---------dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   73 (309)
                      .|..|.. .|.++.|||||++|+.++.         ++.+.|||++++.                               
T Consensus        56 ~~~~~~~-~i~~~~~SpDg~~i~~~~~~~~~~r~s~~~~~~l~d~~~~~-------------------------------  103 (470)
T d2bgra1          56 TFDEFGH-SINDYSISPDGQFILLEYNYVKQWRHSYTASYDIYDLNKRQ-------------------------------  103 (470)
T ss_dssp             TTTTSSS-CCCEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEETTTTE-------------------------------
T ss_pred             hhhhccC-ccceeEECCCCCEEEEEECCcceeeeccCceEEEEECCCCc-------------------------------
Confidence            5667777 7899999999999998753         5677888887531                               


Q ss_pred             ccCCCCCcCcccccccccCCeEEEEEecCCCcEEEEEcCCCeEEEEEcCCCCcceEEEeec------------------c
Q 021657           74 KAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPVIKVEKA------------------H  135 (309)
Q Consensus        74 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~------------------~  135 (309)
                                ...+..+...+..+.|+|+| +.+|.. .++.+.+|+...++.  ......                  .
T Consensus       104 ----------~~~l~~~~~~~~~~~~SPDG-~~ia~~-~~~~l~~~~~~~g~~--~~~t~~~~~~~~~~g~~d~~~~~~~  169 (470)
T d2bgra1         104 ----------LITEERIPNNTQWVTWSPVG-HKLAYV-WNNDIYVKIEPNLPS--YRITWTGKEDIIYNGITDWVYEEEV  169 (470)
T ss_dssp             ----------ECCSSCCCTTEEEEEECSST-TCEEEE-ETTEEEEESSTTSCC--EECCSCCBTTTEEESBCCHHHHHHT
T ss_pred             ----------ccccccCCccccccccccCc-ceeeEe-ecccceEEECCCCce--eeeeeccCCCcccccccceeeeeee
Confidence                      23455677889999999999 666664 567899999887762  222111                  1


Q ss_pred             CCceeEEEeccCCCCeEEEEcCC
Q 021657          136 DADLHCVDWNPLDDNLILTGSAD  158 (309)
Q Consensus       136 ~~~v~~~~~~~~~~~~l~~~~~d  158 (309)
                      ......+.|+| +++.|+....|
T Consensus       170 ~~~~~~~~wSP-DGk~ia~~~~d  191 (470)
T d2bgra1         170 FSAYSALWWSP-NGTFLAYAQFN  191 (470)
T ss_dssp             SSSSBCEEECT-TSSEEEEEEEE
T ss_pred             cCCccccEECC-CCCccceeEec
Confidence            22345678999 88888887543

>d1jofa_ b.69.10.1 (A:) 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neurospora crassa [TaxId: 5141]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: 3-carboxy-cis,cis-mucoante lactonizing enzyme
family: 3-carboxy-cis,cis-mucoante lactonizing enzyme
domain: 3-carboxy-cis,cis-mucoante lactonizing enzyme
species: Neurospora crassa [TaxId: 5141]

Probab=99.41  E-value=1.7e-10  Score=91.00  Aligned_cols=169  Identities=13%  Similarity=0.133  Sum_probs=105.2

Q ss_pred             CeEEEEEecCCCcEEEEEcCCCeEEEEEcCCCCc-ceEEEe--eccCCceeEEEeccCCCCeE-EEEcCCCcEEEEecCC
Q 021657           93 TVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTS-PVIKVE--KAHDADLHCVDWNPLDDNLI-LTGSADNSVRMFDRRN  168 (309)
Q Consensus        93 ~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~-~~~~~~--~~~~~~v~~~~~~~~~~~~l-~~~~~dg~i~i~d~~~  168 (309)
                      .+.++.|+|+|+.++++......|.+|+...... ......  .......+.++|+| +++++ ++...+++|.+|++..
T Consensus       146 h~h~v~~sPdG~~l~v~d~g~d~v~~~~~~~~g~~~~~~~~~~~~~g~gPr~i~f~p-dg~~~yv~~e~~~~V~v~~~~~  224 (365)
T d1jofa_         146 GIHGMVFDPTETYLYSADLTANKLWTHRKLASGEVELVGSVDAPDPGDHPRWVAMHP-TGNYLYALMEAGNRICEYVIDP  224 (365)
T ss_dssp             CEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCEEEEEEEECSSTTCCEEEEEECT-TSSEEEEEETTTTEEEEEEECT
T ss_pred             cceEEEECCCCCEEEEeeCCCCEEEEEEccCCCceeeccceeecCCCCceEEEEECC-CCceEEEeccCCCEEEEEEecC
Confidence            4689999999955555555567899988654331 111111  12345788999999 88766 5555689999999876


Q ss_pred             CCCCCCCCceeeec-----------------cCCCCeeEEEEecCCCcEEEEecCCC-----cEEEEeCCcccccccCCC
Q 021657          169 LTSNGVGSPINKFE-----------------GHSAAVLCVQWSPDKSSVFGSSAEDG-----LLNIWDYEKVGKKVEQGP  226 (309)
Q Consensus       169 ~~~~~~~~~~~~~~-----------------~~~~~v~~~~~~~~~~~l~~~~~~dg-----~i~iwd~~~~~~~~~~~~  226 (309)
                      ..    ...+....                 ........+.++|+|++|+++...+.     .|..|++...+....   
T Consensus       225 ~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~spdG~~lyvsnr~~~~~~~~~i~~~~~~~~g~~~~---  297 (365)
T d1jofa_         225 AT----HMPVYTHHSFPLIPPGIPDRDPETGKGLYRADVCALTFSGKYMFASSRANKFELQGYIAGFKLRDCGSIEK---  297 (365)
T ss_dssp             TT----CCEEEEEEEEESSCTTCCCBCTTTSSBSEEEEEEEECTTSSEEEEEEEESSTTSCCEEEEEEECTTSCEEE---
T ss_pred             CC----ceEEEEeeeeccccccccccccccccccCCccceEECCCCCEEEEEcccCCCccceEEEEEEecCCCceee---
Confidence            32    11121111                 11123567899999999876654333     377788776332211   


Q ss_pred             CCcCCCCceeeeecCCCcceeeEEEcc-CCCeEEEEecCCCCCCCCCCeEEEEEccc
Q 021657          227 RTTNYPAGLFFQHAGHRDKVVDFHWNA-SDPWTVVSVSDDCDSTGGGGTLQIWRMSD  282 (309)
Q Consensus       227 ~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~~~~s~s~d~~s~~~dg~v~vw~~~~  282 (309)
                            ...+............++++| ++.+|+++...+       +.|.+|+++.
T Consensus       298 ------~~~~~~~~~~G~~p~~i~~~p~~G~~l~va~~~s-------~~v~v~~~~~  341 (365)
T d1jofa_         298 ------QLFLSPTPTSGGHSNAVSPCPWSDEWMAITDDQE-------GWLEIYRWKD  341 (365)
T ss_dssp             ------EEEEEECSSCCTTCCCEEECTTCTTEEEEECSSS-------CEEEEEEEET
T ss_pred             ------EeEeeEEEcCCCCccEEEecCCCCCEEEEEeCCC-------CeEEEEEEeC
Confidence                  011122222334567899998 678888765555       9999999873

>d2bgra1 b.70.3.1 (A:39-508) Dipeptidyl peptidase IV/CD26, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: DPP6 N-terminal domain-like
family: DPP6 N-terminal domain-like
domain: Dipeptidyl peptidase IV/CD26, N-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=99.36  E-value=5.7e-12  Score=103.29  Aligned_cols=155  Identities=12%  Similarity=0.171  Sum_probs=109.2

Q ss_pred             EEEECCCCCEEEEecCCCcEEEEeCCccccccccCCccccccCCCCceeecCCCCCCCCcccCCCCCcCcccccccccCC
Q 021657           14 ALAMCPTEPYVLSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDT   93 (309)
Q Consensus        14 ~~~~~~~~~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   93 (309)
                      .+.|.++++++..  .|+.+.+||+.++.......                                   -..+..|...
T Consensus        21 ~~~W~~d~~~~~~--~~~~~~~~~~~t~~~~~~~~-----------------------------------~~~~~~~~~~   63 (470)
T d2bgra1          21 SLRWISDHEYLYK--QENNILVFNAEYGNSSVFLE-----------------------------------NSTFDEFGHS   63 (470)
T ss_dssp             CCEECSSSEEEEE--SSSCEEEEETTTCCEEEEEC-----------------------------------TTTTTTSSSC
T ss_pred             CCEeCCCCEEEEE--cCCcEEEEECCCCCEEEEEc-----------------------------------hhhhhhccCc
Confidence            6789999987764  47889999998764322111                                   1244567788


Q ss_pred             eEEEEEecCCCcEEEEEc---------CCCeEEEEEcCCCCcceEEEeeccCCceeEEEeccCCCCeEEEEcCCCcEEEE
Q 021657           94 VEDVTFCPSSAQEFCSVG---------DDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMF  164 (309)
Q Consensus        94 v~~~~~~~~~~~~l~s~~---------~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~  164 (309)
                      |.++.|+||+ +.|+.++         .++.+.+||+.+++   ...+..+...+..+.|+| +|+.+|.. .++.+++|
T Consensus        64 i~~~~~SpDg-~~i~~~~~~~~~~r~s~~~~~~l~d~~~~~---~~~l~~~~~~~~~~~~SP-DG~~ia~~-~~~~l~~~  137 (470)
T d2bgra1          64 INDYSISPDG-QFILLEYNYVKQWRHSYTASYDIYDLNKRQ---LITEERIPNNTQWVTWSP-VGHKLAYV-WNNDIYVK  137 (470)
T ss_dssp             CCEEEECTTS-SEEEEEEEEEECSSSCEEEEEEEEETTTTE---ECCSSCCCTTEEEEEECS-STTCEEEE-ETTEEEEE
T ss_pred             cceeEECCCC-CEEEEEECCcceeeeccCceEEEEECCCCc---ccccccCCcccccccccc-CcceeeEe-ecccceEE
Confidence            9999999999 6666654         35788999998776   455677888999999999 99999985 57789999


Q ss_pred             ecCCCCCCCCCCceeeecc------------------CCCCeeEEEEecCCCcEEEEecCCCcEEEEeCCc
Q 021657          165 DRRNLTSNGVGSPINKFEG------------------HSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEK  217 (309)
Q Consensus       165 d~~~~~~~~~~~~~~~~~~------------------~~~~v~~~~~~~~~~~l~~~~~~dg~i~iwd~~~  217 (309)
                      +...      ++..+....                  ..+....+.|+|||++++.....+..+..|.+..
T Consensus       138 ~~~~------g~~~~~t~~~~~~~~~~g~~d~~~~~~~~~~~~~~~wSPDGk~ia~~~~d~~~v~~~~~~~  202 (470)
T d2bgra1         138 IEPN------LPSYRITWTGKEDIIYNGITDWVYEEEVFSAYSALWWSPNGTFLAYAQFNDTEVPLIEYSF  202 (470)
T ss_dssp             SSTT------SCCEECCSCCBTTTEEESBCCHHHHHHTSSSSBCEEECTTSSEEEEEEEECTTCCEEEEEE
T ss_pred             ECCC------CceeeeeeccCCCcccccccceeeeeeecCCccccEECCCCCccceeEecCCcCceEEEEe
Confidence            9887      444433221                  1223456889999998543333334466665543

>d1qnia2 b.69.3.1 (A:10-450) Nitrous oxide reductase, N-terminal domain {Pseudomonas nautica [TaxId: 2743]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nitrous oxide reductase, N-terminal domain
family: Nitrous oxide reductase, N-terminal domain
domain: Nitrous oxide reductase, N-terminal domain
species: Pseudomonas nautica [TaxId: 2743]

Probab=99.35  E-value=2.8e-11  Score=96.09  Aligned_cols=231  Identities=6%  Similarity=-0.083  Sum_probs=127.9

Q ss_pred             EEEecCCCcEEEEeCCccccccccCCccccccCCCCceeecCCCCCCCCcccCCCCCcCcccccccccCCeEEEEEecCC
Q 021657           24 VLSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSS  103 (309)
Q Consensus        24 l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~  103 (309)
                      ++|++.+|+|+||++.++.................        +.......+..  .......-..|..........|||
T Consensus        14 f~Sgg~sG~V~V~dlpS~r~l~~IpVfspd~~~g~--------g~~~es~~vl~--~~~~~~~gd~hhP~~s~t~gtpDG   83 (441)
T d1qnia2          14 FWSGGHQGEVRVLGVPSMRELMRIPVFNVDSATGW--------GITNESKEILG--GDQQYLNGDCHHPHISMTDGRYDG   83 (441)
T ss_dssp             EEECBTTCCEEEEEETTTEEEEEECSSSBCTTTCT--------TTSHHHHHHHC--SSSCCSCCCBCCCEEEEETTEEEE
T ss_pred             EEeCCCCCcEEEEeCCCCcEEEEEEeEcCCCCEEE--------EECCccceEEe--cccccccCcccCCCcceecccCCC
Confidence            67899999999999987744333211000000000        00000000000  000111123344555666678999


Q ss_pred             CcEEEEEcCCCeEEEEEcCCCCcceEEEe-eccCCceeEEEeccCCCC--eEEEEcCCC-----------------cEEE
Q 021657          104 AQEFCSVGDDSCLILWDARVGTSPVIKVE-KAHDADLHCVDWNPLDDN--LILTGSADN-----------------SVRM  163 (309)
Q Consensus       104 ~~~l~s~~~dg~i~iwd~~~~~~~~~~~~-~~~~~~v~~~~~~~~~~~--~l~~~~~dg-----------------~i~i  163 (309)
                      +.++++...+++|.++|+.+.+  ..... ..+...+..++|+| +++  +++..+.+.                 .+..
T Consensus        84 r~lfV~d~~~~rVavIDl~t~k--~~~ii~iP~g~gphgi~~sp-dg~t~YV~~~~~~~v~~~~dg~~~~~~~~~~~~~~  160 (441)
T d1qnia2          84 KYLFINDKANTRVARIRLDIMK--TDKITHIPNVQAIHGLRLQK-VPKTNYVFCNAEFVIPQPNDGTDFSLDNSYTMFTA  160 (441)
T ss_dssp             EEEEEEETTTTEEEEEETTTTE--EEEEEECTTCCCEEEEEECC-SSBCCEEEEEECSCEESSCSSSCCCGGGEEEEEEE
T ss_pred             CEEEEEcCCCCEEEEEECCCCc--EeeEEecCCCCCccceEEec-cCCEEEEEeccCCcccccCcccccccccccceEEe
Confidence            5556777789999999999887  33333 24567899999999 777  444443332                 2345


Q ss_pred             EecCCCCCCCCCCceeeeccCCCCeeEEEEecCCCcEEEEecCCCcEEEEeCCcc--------------------ccccc
Q 021657          164 FDRRNLTSNGVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKV--------------------GKKVE  223 (309)
Q Consensus       164 ~d~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~dg~i~iwd~~~~--------------------~~~~~  223 (309)
                      +|..+      .+...++... ..+..++++|+|+++++++.....+..++..+.                    ++...
T Consensus       161 iD~~t------~~v~~qI~v~-~~p~~v~~spdGk~a~vt~~nse~~~~id~~t~~~~d~i~v~n~p~~~~~~~dGk~~~  233 (441)
T d1qnia2         161 IDAET------MDVAWQVIVD-GNLDNTDADYTGKYATSTCYNSERAVDLAGTMRNDRDWVVVFNVERIAAAVKAGNFKT  233 (441)
T ss_dssp             EETTT------CSEEEEEEES-SCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCSSBCEEEEEEHHHHHHHHHTTCCBC
T ss_pred             ecCcc------ceeeEEEecC-CCccceEECCCCCEEEEEecCCCceEEEeccCcceEEEEEeCCccceEEEecCCCEEE
Confidence            77776      5666665533 457789999999987766543322222221110                    00000


Q ss_pred             CCCCCc-----CCCCceeeeecCCCcceeeEEEccCCCeEEEEecCCCCCCCCCCeEEEEEccc
Q 021657          224 QGPRTT-----NYPAGLFFQHAGHRDKVVDFHWNASDPWTVVSVSDDCDSTGGGGTLQIWRMSD  282 (309)
Q Consensus       224 ~~~~~~-----~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~s~d~~s~~~dg~v~vw~~~~  282 (309)
                      ......     ......+....... ....+.++|+|.++++++..+       ++|.+||+..
T Consensus       234 v~~~~v~vvd~~~~~~v~~~IPvgk-sPhGv~vSPDGkyl~~~~~~~-------~tvsv~d~~k  289 (441)
T d1qnia2         234 IGDSKVPVVDGRGESEFTRYIPVPK-NPHGLNTSPDGKYFIANGKLS-------PTVSVIAIDK  289 (441)
T ss_dssp             CTTCCCCEEECSSSCSSEEEECCBS-SCCCEEECTTSCEEEEECTTS-------SBEEEEEGGG
T ss_pred             eCCCCcEEEEcccCCceEEEEeCCC-CccCceECCCCCEEEEeCCcC-------CcEEEEEeeh
Confidence            000000     00112233333333 357899999999999866655       9999999984

>d2p4oa1 b.68.6.3 (A:4-305) Hypothetical protein All0351 homologue {Nostoc punctiforme [TaxId: 272131]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: All0351-like
domain: Hypothetical protein All0351 homologue
species: Nostoc punctiforme [TaxId: 272131]

Probab=99.31  E-value=8.4e-10  Score=84.64  Aligned_cols=198  Identities=12%  Similarity=0.025  Sum_probs=131.1

Q ss_pred             ceEEEEECCCCCEEEEecCCCcEEEEeCCccccccccCCccccccCCCCceeecCCCCCCCCcccCCCCCcCcccccccc
Q 021657           11 AEFALAMCPTEPYVLSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGH   90 (309)
Q Consensus        11 ~V~~~~~~~~~~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   90 (309)
                      .+..++++|||+++++...+++|..|+....                                          ...+...
T Consensus        29 ~~e~iAv~pdG~l~vt~~~~~~I~~i~p~g~------------------------------------------~~~~~~~   66 (302)
T d2p4oa1          29 FLENLASAPDGTIFVTNHEVGEIVSITPDGN------------------------------------------QQIHATV   66 (302)
T ss_dssp             CEEEEEECTTSCEEEEETTTTEEEEECTTCC------------------------------------------EEEEEEC
T ss_pred             CcCCEEECCCCCEEEEeCCCCEEEEEeCCCC------------------------------------------EEEEEcC
Confidence            3678999999999999999999988886532                                          1122334


Q ss_pred             cCCeEEEEEecCCCcEEEEEcCCCeEEEEEcCCCCcceEEEe-eccCCceeEEEeccCCCCeEEEEcCCCcEEEEecCCC
Q 021657           91 EDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPVIKVE-KAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNL  169 (309)
Q Consensus        91 ~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~-~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~  169 (309)
                      ...+.+++|.++| +++++...++.+..|+............ .........+++.+ +++++++-+.++.+..+|... 
T Consensus        67 ~~~~~gla~~~dG-~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~i~~~~-~g~~~v~~~~~~~i~~~~~~~-  143 (302)
T d2p4oa1          67 EGKVSGLAFTSNG-DLVATGWNADSIPVVSLVKSDGTVETLLTLPDAIFLNGITPLS-DTQYLTADSYRGAIWLIDVVQ-  143 (302)
T ss_dssp             SSEEEEEEECTTS-CEEEEEECTTSCEEEEEECTTSCEEEEEECTTCSCEEEEEESS-SSEEEEEETTTTEEEEEETTT-
T ss_pred             CCCcceEEEcCCC-CeEEEecCCceEEEEEecccccceeeccccCCccccceeEEcc-CCCEEeeccccccceeeeccC-
Confidence            5678999999999 7888888888888888765442222222 23345678999999 899999888889898888776 


Q ss_pred             CCCCCCCceeee----------ccCCCCeeEEEEecCCCcEEEEecCCCcEEEEeCCcccccccCCCCCcCCCCceeeee
Q 021657          170 TSNGVGSPINKF----------EGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQH  239 (309)
Q Consensus       170 ~~~~~~~~~~~~----------~~~~~~v~~~~~~~~~~~l~~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~  239 (309)
                           .......          .........+.+.  +.+++++.+.++.|..+++........         ..    .
T Consensus       144 -----~~~~~~~~~~~~~~~~~~~~~~~~ngi~~~--~~~l~~~~~~~~~i~~~~~~~~~~~~~---------~~----~  203 (302)
T d2p4oa1         144 -----PSGSIWLEHPMLARSNSESVFPAANGLKRF--GNFLYVSNTEKMLLLRIPVDSTDKPGE---------PE----I  203 (302)
T ss_dssp             -----TEEEEEEECGGGSCSSTTCCSCSEEEEEEE--TTEEEEEETTTTEEEEEEBCTTSCBCC---------CE----E
T ss_pred             -----CcceeEecCCccceeeccCccccccccccc--CCceeeecCCCCeEEeccccccccccc---------cc----c
Confidence                 2211111          1112234555554  455777888899999888876332211         01    1


Q ss_pred             cCCCcceeeEEEccCCCeEEEEecCCCCCCCCCCeEEEEEcc
Q 021657          240 AGHRDKVVDFHWNASDPWTVVSVSDDCDSTGGGGTLQIWRMS  281 (309)
Q Consensus       240 ~~~~~~v~~~~~~~~~~~~~~s~s~d~~s~~~dg~v~vw~~~  281 (309)
                      .........+++++++..++ +...       ++.|..++..
T Consensus       204 ~~~~~~pdgia~d~dG~l~v-a~~~-------~~~V~~i~p~  237 (302)
T d2p4oa1         204 FVEQTNIDDFAFDVEGNLYG-ATHI-------YNSVVRIAPD  237 (302)
T ss_dssp             EEESCCCSSEEEBTTCCEEE-ECBT-------TCCEEEECTT
T ss_pred             ccCCCCCcceEECCCCCEEE-EEcC-------CCcEEEECCC
Confidence            11223457899999887544 3332       3788888765

>d1q7fa_ b.68.9.1 (A:) Brain tumor cg10719-pa {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: NHL repeat
family: NHL repeat
domain: Brain tumor cg10719-pa
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.25  E-value=5.7e-09  Score=78.91  Aligned_cols=231  Identities=12%  Similarity=0.122  Sum_probs=140.3

Q ss_pred             eEEEEECCCCCEEEEecCCCcEEEEeCCccccccccCCc----------cccccCCCCceeecCCCCCCCCcccCCCCCc
Q 021657           12 EFALAMCPTEPYVLSGGKDKSVVLWSIQDHITSSATDPA----------TAKSAGSSGSIIKQSPKPGDGNDKAADGPSV   81 (309)
Q Consensus        12 V~~~~~~~~~~~l~t~~~dg~i~vwd~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (309)
                      -..|+++++|+++++-.....|++||.+...........          ......... ...+........+..++. ..
T Consensus        25 P~gvavd~dg~i~VaD~~n~rI~v~d~~G~~~~~~~~~~~~~~~~~~p~~~~~~~~~~-~~~~~~~~~~~~i~~~~~-~g  102 (279)
T d1q7fa_          25 PSGVAVNAQNDIIVADTNNHRIQIFDKEGRFKFQFGECGKRDSQLLYPNRVAVVRNSG-DIIVTERSPTHQIQIYNQ-YG  102 (279)
T ss_dssp             EEEEEECTTCCEEEEEGGGTEEEEECTTSCEEEEECCBSSSTTCBSSEEEEEEETTTT-EEEEEECGGGCEEEEECT-TS
T ss_pred             ccEEEEcCCCCEEEEECCCCEEEEEeCCCCEEEEecccCCCccccccccccccccccc-ccceeccCCccccccccc-cc
Confidence            479999999999888888899999997643111100000          000000101 111111111122222222 12


Q ss_pred             Cccccc-ccccCCeEEEEEecCCCcEEEEEcCCCeEEEEEcCCCCcceEEEe--eccCCceeEEEeccCCCCeEEEEcCC
Q 021657           82 GPRGIY-NGHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPVIKVE--KAHDADLHCVDWNPLDDNLILTGSAD  158 (309)
Q Consensus        82 ~~~~~~-~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~--~~~~~~v~~~~~~~~~~~~l~~~~~d  158 (309)
                      .....+ .........+++.+++ .++++....+.+.+++.. ++  ....+  ..+......+++.+ +++.+++....
T Consensus       103 ~~~~~~~~~~~~~p~~~avd~~G-~i~v~~~~~~~~~~~~~~-g~--~~~~~g~~~~~~~~~~i~~d~-~g~i~v~d~~~  177 (279)
T d1q7fa_         103 QFVRKFGATILQHPRGVTVDNKG-RIIVVECKVMRVIIFDQN-GN--VLHKFGCSKHLEFPNGVVVND-KQEIFISDNRA  177 (279)
T ss_dssp             CEEEEECTTTCSCEEEEEECTTS-CEEEEETTTTEEEEECTT-SC--EEEEEECTTTCSSEEEEEECS-SSEEEEEEGGG
T ss_pred             cceeecCCCcccccceeccccCC-cEEEEeeccceeeEeccC-Cc--eeecccccccccccceeeecc-ceeEEeeeccc
Confidence            222222 1233456788898888 677777777888888854 44  33333  34556778899999 88899998889


Q ss_pred             CcEEEEecCCCCCCCCCCceeeec--cCCCCeeEEEEecCCCcEEEEec-CCCcEEEEeCCcccccccCCCCCcCCCCce
Q 021657          159 NSVRMFDRRNLTSNGVGSPINKFE--GHSAAVLCVQWSPDKSSVFGSSA-EDGLLNIWDYEKVGKKVEQGPRTTNYPAGL  235 (309)
Q Consensus       159 g~i~i~d~~~~~~~~~~~~~~~~~--~~~~~v~~~~~~~~~~~l~~~~~-~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~  235 (309)
                      +.|++||..       ++.+.++.  +.......|++.++|+ ++++-. .++.|.+|+...  +              .
T Consensus       178 ~~V~~~d~~-------G~~~~~~g~~g~~~~P~giavD~~G~-i~Vad~~~~~~v~~f~~~G--~--------------~  233 (279)
T d1q7fa_         178 HCVKVFNYE-------GQYLRQIGGEGITNYPIGVGINSNGE-ILIADNHNNFNLTIFTQDG--Q--------------L  233 (279)
T ss_dssp             TEEEEEETT-------CCEEEEESCTTTSCSEEEEEECTTCC-EEEEECSSSCEEEEECTTS--C--------------E
T ss_pred             cceeeeecC-------CceeeeecccccccCCcccccccCCe-EEEEECCCCcEEEEECCCC--C--------------E
Confidence            999999975       56666663  2344578999999998 555543 455799998542  2              2


Q ss_pred             eeee--cCCCcceeeEEEccCCCeEEEEecCCCCCCCCCCeEEEEEccc
Q 021657          236 FFQH--AGHRDKVVDFHWNASDPWTVVSVSDDCDSTGGGGTLQIWRMSD  282 (309)
Q Consensus       236 ~~~~--~~~~~~v~~~~~~~~~~~~~~s~s~d~~s~~~dg~v~vw~~~~  282 (309)
                      +..+  .........|++.|++. ++++. .+       +.|++|+...
T Consensus       234 ~~~~~~~~~~~~p~~vav~~dG~-l~V~~-~n-------~~v~~fr~~~  273 (279)
T d1q7fa_         234 ISALESKVKHAQCFDVALMDDGS-VVLAS-KD-------YRLYIYRYVQ  273 (279)
T ss_dssp             EEEEEESSCCSCEEEEEEETTTE-EEEEE-TT-------TEEEEEECSC
T ss_pred             EEEEeCCCCCCCEeEEEEeCCCc-EEEEe-CC-------CeEEEEEeee
Confidence            2222  22234578899999875 55433 33       7999999983

>d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.21  E-value=1e-10  Score=92.52  Aligned_cols=191  Identities=11%  Similarity=0.076  Sum_probs=110.8

Q ss_pred             EEEEECCCCCEEEEec-CCCcEEEEeCCccccccccCCccc--cccCCCCceeecCCCCCCCCcccCCCCCcCcc-----
Q 021657           13 FALAMCPTEPYVLSGG-KDKSVVLWSIQDHITSSATDPATA--KSAGSSGSIIKQSPKPGDGNDKAADGPSVGPR-----   84 (309)
Q Consensus        13 ~~~~~~~~~~~l~t~~-~dg~i~vwd~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----   84 (309)
                      ..++|+|||++|+.+. .++.+.+||+.+............  ........   ......++.+..++.......     
T Consensus       127 ~~~a~SpDGk~l~va~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~---~v~~~~Dg~~~~~~~~~~~~~~~~~~  203 (368)
T d1mdah_         127 HIIGNCASSACLLFFLFGSSAAAGLSVPGASDDQLTKSASCFHIHPGAAAT---HYLGSCPASLAASDLAAAPAAAGIVG  203 (368)
T ss_dssp             TSEEECTTSSCEEEEECSSSCEEEEEETTTEEEEEEECSSCCCCEEEETTE---EECCCCTTSCEEEECCSSCCCCEECC
T ss_pred             cceEECCCCCEEEEEeCCCCeEEEEECCCCcEeEEeeccCcceEccCCCce---EEEEcCCCCEEEEEecCCceeeeeee
Confidence            3589999999988775 579999999988743332211111  01111111   111222333333332222111     


Q ss_pred             -cccccccCCeEEEEEecCCCcEEEEEcCCCeEEEEEcCCCCcceEEEeecc----------CCceeEEEeccCCCCeEE
Q 021657           85 -GIYNGHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPVIKVEKAH----------DADLHCVDWNPLDDNLIL  153 (309)
Q Consensus        85 -~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~----------~~~v~~~~~~~~~~~~l~  153 (309)
                       ..+..+...+....+.+++ ..+.+  ..+.+.++++..+..........+          ......++++| ++..++
T Consensus       204 ~~~~~~~~~~~~~~~~~~~g-~~~~~--~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~~-~~~~~~  279 (368)
T d1mdah_         204 AQCTGAQNCSSQAAQANYPG-MLVWA--VASSILQGDIPAAGATMKAAIDGNESGRKADNFRSAGFQMVAKLK-NTDGIM  279 (368)
T ss_dssp             CCSCTTSCBCSCCEEETTTT-EEEEC--BSSCCEEEECCSSCCEEECCCCSSCTHHHHTTEEECSSSCEEEET-TTTEEE
T ss_pred             cccccccccceeecccccCc-EEEEe--cCCCEEEEeecCCceEEEeecccccceeeeeeecCCCceeEEEcC-CCCEEE
Confidence             1223344455566777776 44443  345566777665542111111111          12234577888 666655


Q ss_pred             EEcCC---------CcEEEEecCCCCCCCCCCceeeeccCCCCeeEEEEecCCCc-EEEEecCCCcEEEEeCCc
Q 021657          154 TGSAD---------NSVRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWSPDKSS-VFGSSAEDGLLNIWDYEK  217 (309)
Q Consensus       154 ~~~~d---------g~i~i~d~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~-l~~~~~~dg~i~iwd~~~  217 (309)
                      ....+         ..|.+||..+      ++.+..+.. ...+.+++|+|||+. +++++..|+.|++||..+
T Consensus       280 v~~~~~~~~~~~~~~~v~v~D~~t------~~~~~~~~~-~~~~~~~a~spDG~~~ly~s~~~~~~v~v~D~~t  346 (368)
T d1mdah_         280 ILTVEHSRSCLAAAENTSSVTASV------GQTSGPISN-GHDSDAIIAAQDGASDNYANSAGTEVLDIYDAAS  346 (368)
T ss_dssp             EEEEECSSCTTSCEEEEEEEESSS------CCEEECCEE-EEEECEEEECCSSSCEEEEEETTTTEEEEEESSS
T ss_pred             EEecCCCceeecCCceEEEEECCC------CcEeEEecC-CCceeEEEECCCCCEEEEEEeCCCCeEEEEECCC
Confidence            54322         3588999998      788877763 457889999999974 667888899999999987

>d2dg1a1 b.68.6.1 (A:6-324) Lactonase Drp35 {Staphylococcus aureus [TaxId: 1280]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Lactonase Drp35
species: Staphylococcus aureus [TaxId: 1280]

Probab=99.20  E-value=9.6e-09  Score=79.19  Aligned_cols=204  Identities=7%  Similarity=0.024  Sum_probs=122.5

Q ss_pred             eEEEEECCCCCEEEEecCCCcEEEEeCCccccccccCCccccccCCCCceeecCCCCCCCCcccCCCCCcCccccccccc
Q 021657           12 EFALAMCPTEPYVLSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHE   91 (309)
Q Consensus        12 V~~~~~~~~~~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   91 (309)
                      +..++|+++|++.++-...++|..|+.++..                                        ....+....
T Consensus        42 lEG~~~D~~G~Ly~~D~~~g~I~ri~p~g~~----------------------------------------~~~~~~~~~   81 (319)
T d2dg1a1          42 LEGLNFDRQGQLFLLDVFEGNIFKINPETKE----------------------------------------IKRPFVSHK   81 (319)
T ss_dssp             EEEEEECTTSCEEEEETTTCEEEEECTTTCC----------------------------------------EEEEEECSS
T ss_pred             cEeCEECCCCCEEEEECCCCEEEEEECCCCe----------------------------------------EEEEEeCCC
Confidence            4688999999988888888999888876421                                        111122234


Q ss_pred             CCeEEEEEecCCCcEEEEEcC----CCeEEEEEcCCCCcceEEEee--ccCCceeEEEeccCCCCeEEEEcCC------C
Q 021657           92 DTVEDVTFCPSSAQEFCSVGD----DSCLILWDARVGTSPVIKVEK--AHDADLHCVDWNPLDDNLILTGSAD------N  159 (309)
Q Consensus        92 ~~v~~~~~~~~~~~~l~s~~~----dg~i~iwd~~~~~~~~~~~~~--~~~~~v~~~~~~~~~~~~l~~~~~d------g  159 (309)
                      .....+++.++| +++++...    .+.+...+.....  ......  ........+++.+ ++++.++....      +
T Consensus        82 ~~p~gla~~~dG-~l~va~~~~~~~~~~i~~~~~~~~~--~~~~~~~~~~~~~~nd~~~d~-~G~l~vtd~~~~~~~~~g  157 (319)
T d2dg1a1          82 ANPAAIKIHKDG-RLFVCYLGDFKSTGGIFAATENGDN--LQDIIEDLSTAYCIDDMVFDS-KGGFYFTDFRGYSTNPLG  157 (319)
T ss_dssp             SSEEEEEECTTS-CEEEEECTTSSSCCEEEEECTTSCS--CEEEECSSSSCCCEEEEEECT-TSCEEEEECCCBTTBCCE
T ss_pred             CCeeEEEECCCC-CEEEEecCCCccceeEEEEcCCCce--eeeeccCCCcccCCcceeEEe-ccceeecccccccccCcc
Confidence            457889999998 66665433    2345555554444  222221  1223467889999 88877664321      2


Q ss_pred             cEEEEecCCCCCCCCCCceeeeccCCCCeeEEEEecCCCcEEEEecCCCcEEEEeCCcccccccCCCCCcCCCCceeeee
Q 021657          160 SVRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQH  239 (309)
Q Consensus       160 ~i~i~d~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~  239 (309)
                      .+..++..       +..+..+...-...+.|+|+|+++.|+++-+..+.|..|++...+......       .......
T Consensus       158 ~v~~~~~d-------g~~~~~~~~~~~~pnGia~s~dg~~lyvad~~~~~I~~~d~~~~g~~~~~~-------~~~~~~~  223 (319)
T d2dg1a1         158 GVYYVSPD-------FRTVTPIIQNISVANGIALSTDEKVLWVTETTANRLHRIALEDDGVTIQPF-------GATIPYY  223 (319)
T ss_dssp             EEEEECTT-------SCCEEEEEEEESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSSSEEEE-------EEEEEEE
T ss_pred             eeEEEecc-------cceeEEEeeccceeeeeeeccccceEEEecccCCceEEEEEcCCCceeccc-------cceeeec
Confidence            35555443       333333333334567899999999888888888999999987633221100       0011111


Q ss_pred             cCCCcceeeEEEccCCCeEEEEecCCCCCCCCCCeEEEEEcc
Q 021657          240 AGHRDKVVDFHWNASDPWTVVSVSDDCDSTGGGGTLQIWRMS  281 (309)
Q Consensus       240 ~~~~~~v~~~~~~~~~~~~~~s~s~d~~s~~~dg~v~vw~~~  281 (309)
                      .......-.+++.++|..++ +....       +.|.+|+-.
T Consensus       224 ~~~~~~PdGl~vD~~G~l~V-a~~~~-------g~V~~~~p~  257 (319)
T d2dg1a1         224 FTGHEGPDSCCIDSDDNLYV-AMYGQ-------GRVLVFNKR  257 (319)
T ss_dssp             CCSSSEEEEEEEBTTCCEEE-EEETT-------TEEEEECTT
T ss_pred             cCCccceeeeeEcCCCCEEE-EEcCC-------CEEEEECCC
Confidence            11222356799999887554 33333       799999854

>d1rwia_ b.68.9.1 (A:) Serine/threonine-protein kinase PknD {Mycobacterium tuberculosis [TaxId: 1773]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: NHL repeat
family: NHL repeat
domain: Serine/threonine-protein kinase PknD
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.15  E-value=1.4e-08  Score=75.86  Aligned_cols=194  Identities=7%  Similarity=-0.043  Sum_probs=119.9

Q ss_pred             EEEEECCCCCEEEE-ecCCCcEEEEeCCccccccccCCccccccCCCCceeecCCCCCCCCcccCCCCCcCccccccccc
Q 021657           13 FALAMCPTEPYVLS-GGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHE   91 (309)
Q Consensus        13 ~~~~~~~~~~~l~t-~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   91 (309)
                      ..++++++|.+.++ .+..+.+..++.......                                       .....+ .
T Consensus        17 ~~vavd~dG~i~v~~~~~~~~i~~~~~~~~~~~---------------------------------------~~~~~~-~   56 (260)
T d1rwia_          17 SGVAVDSAGNVYVTSEGMYGRVVKLATGSTGTT---------------------------------------VLPFNG-L   56 (260)
T ss_dssp             EEEEECTTCCEEEEECSSSCEEEEEC----CEE---------------------------------------ECCCCS-C
T ss_pred             CEEEEcCCCCEEEEEcCCCCEEEEEcCCCceEE---------------------------------------EeccCC-c
Confidence            79999999997665 455677877776532111                                       011111 1


Q ss_pred             CCeEEEEEecCCCcEEEEEcCCCeEEEEEcCCCCcceEEEeeccCCceeEEEeccCCCCeEEEEcCCCcEEEEecCCCCC
Q 021657           92 DTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTS  171 (309)
Q Consensus        92 ~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~  171 (309)
                      .....+++++++ .++++....+.+++++-....  .... .........+++.+ +++++++-..+..+..++...   
T Consensus        57 ~~p~gvav~~~g-~i~v~d~~~~~i~~~~~~~~~--~~~~-~~~~~~p~~iavd~-~g~i~v~d~~~~~~~~~~~~~---  128 (260)
T d1rwia_          57 YQPQGLAVDGAG-TVYVTDFNNRVVTLAAGSNNQ--TVLP-FDGLNYPEGLAVDT-QGAVYVADRGNNRVVKLAAGS---  128 (260)
T ss_dssp             CSCCCEEECTTC-CEEEEETTTEEEEECTTCSCC--EECC-CCSCCSEEEEEECT-TCCEEEEEGGGTEEEEECTTC---
T ss_pred             cCceEEEEcCCC-CEEEeeeeeceeeeeeeccce--eeee-eeeeeecccccccc-cceeEeecccccccccccccc---
Confidence            234678899988 777777777777766544333  2222 22235678999999 888888877777788877664   


Q ss_pred             CCCCCceeeeccCCCCeeEEEEecCCCcEEEEecCCCcEEEEeCCcccccccCCCCCcCCCCceeeeecCCCcceeeEEE
Q 021657          172 NGVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKVVDFHW  251 (309)
Q Consensus       172 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~  251 (309)
                         ................+++.+++. ++++...++.|..++.......               ............|++
T Consensus       129 ---~~~~~~~~~~~~~p~~i~~~~~g~-~~v~~~~~~~i~~~d~~~~~~~---------------~~~~~~~~~p~gi~~  189 (260)
T d1rwia_         129 ---KTQTVLPFTGLNDPDGVAVDNSGN-VYVTDTDNNRVVKLEAESNNQV---------------VLPFTDITAPWGIAV  189 (260)
T ss_dssp             ---SSCEECCCCSCCSCCEEEECTTCC-EEEEEGGGTEEEEECTTTCCEE---------------ECCCSSCCSEEEEEE
T ss_pred             ---ceeeeeeecccCCcceeeecCCCC-Eeeeccccccccccccccceee---------------eeeccccCCCcccee
Confidence               222211112234567899999998 5667777888999987762211               111223345688999


Q ss_pred             ccCCCeEEEEecCCCCCCCCCCeEEEEEcc
Q 021657          252 NASDPWTVVSVSDDCDSTGGGGTLQIWRMS  281 (309)
Q Consensus       252 ~~~~~~~~~s~s~d~~s~~~dg~v~vw~~~  281 (309)
                      ++++. |+++....       +.|..++..
T Consensus       190 d~~g~-l~vsd~~~-------~~i~~~~~~  211 (260)
T d1rwia_         190 DEAGT-VYVTEHNT-------NQVVKLLAG  211 (260)
T ss_dssp             CTTCC-EEEEETTT-------TEEEEECTT
T ss_pred             eeeee-eeeeecCC-------CEEEEEeCC
Confidence            99775 55544433       677777654

>d1jofa_ b.69.10.1 (A:) 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neurospora crassa [TaxId: 5141]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: 3-carboxy-cis,cis-mucoante lactonizing enzyme
family: 3-carboxy-cis,cis-mucoante lactonizing enzyme
domain: 3-carboxy-cis,cis-mucoante lactonizing enzyme
species: Neurospora crassa [TaxId: 5141]

Probab=99.13  E-value=3.9e-09  Score=83.07  Aligned_cols=165  Identities=12%  Similarity=0.109  Sum_probs=105.9

Q ss_pred             ceEEEEECCCCCEEEEecC-CCcEEEEeCCccccccccCCccccccCCCCceeecCCCCCCCCcccCCCCCcCccccccc
Q 021657           11 AEFALAMCPTEPYVLSGGK-DKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNG   89 (309)
Q Consensus        11 ~V~~~~~~~~~~~l~t~~~-dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   89 (309)
                      .++++.|+|+|++|+++.. ...|.+|+....-.....                                  .... ...
T Consensus       146 h~h~v~~sPdG~~l~v~d~g~d~v~~~~~~~~g~~~~~----------------------------------~~~~-~~~  190 (365)
T d1jofa_         146 GIHGMVFDPTETYLYSADLTANKLWTHRKLASGEVELV----------------------------------GSVD-APD  190 (365)
T ss_dssp             CEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCEEEE----------------------------------EEEE-CSS
T ss_pred             cceEEEECCCCCEEEEeeCCCCEEEEEEccCCCceeec----------------------------------ccee-ecC
Confidence            3689999999998876653 557888876531000000                                  0000 111


Q ss_pred             ccCCeEEEEEecCCCcEEEEEcCCCeEEEEEcCCCCcceEEEee-----------------ccCCceeEEEeccCCCCeE
Q 021657           90 HEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPVIKVEK-----------------AHDADLHCVDWNPLDDNLI  152 (309)
Q Consensus        90 ~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~-----------------~~~~~v~~~~~~~~~~~~l  152 (309)
                      .......+.|+|+++.++++.-.+++|.+|++...+........                 .+......+.++| ++++|
T Consensus       191 ~g~gPr~i~f~pdg~~~yv~~e~~~~V~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~sp-dG~~l  269 (365)
T d1jofa_         191 PGDHPRWVAMHPTGNYLYALMEAGNRICEYVIDPATHMPVYTHHSFPLIPPGIPDRDPETGKGLYRADVCALTF-SGKYM  269 (365)
T ss_dssp             TTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEEESSCTTCCCBCTTTSSBSEEEEEEEECT-TSSEE
T ss_pred             CCCceEEEEECCCCceEEEeccCCCEEEEEEecCCCceEEEEeeeeccccccccccccccccccCCccceEECC-CCCEE
Confidence            23457889999999666677778999999999766532222111                 1112345789999 99988


Q ss_pred             EEEcC------CCcEEEEecCCCCCCCCCCceee------eccCCCCeeEEEEec-CCCcEEEEecCCCcEEEEeCCc
Q 021657          153 LTGSA------DNSVRMFDRRNLTSNGVGSPINK------FEGHSAAVLCVQWSP-DKSSVFGSSAEDGLLNIWDYEK  217 (309)
Q Consensus       153 ~~~~~------dg~i~i~d~~~~~~~~~~~~~~~------~~~~~~~v~~~~~~~-~~~~l~~~~~~dg~i~iwd~~~  217 (309)
                      +++..      .+.|..|++...      ..+..      ..........++++| +|++|+++...++.|.+|+++.
T Consensus       270 yvsnr~~~~~~~~~i~~~~~~~~------g~~~~~~~~~~~~~~G~~p~~i~~~p~~G~~l~va~~~s~~v~v~~~~~  341 (365)
T d1jofa_         270 FASSRANKFELQGYIAGFKLRDC------GSIEKQLFLSPTPTSGGHSNAVSPCPWSDEWMAITDDQEGWLEIYRWKD  341 (365)
T ss_dssp             EEEEEESSTTSCCEEEEEEECTT------SCEEEEEEEEECSSCCTTCCCEEECTTCTTEEEEECSSSCEEEEEEEET
T ss_pred             EEEcccCCCccceEEEEEEecCC------CceeeEeEeeEEEcCCCCccEEEecCCCCCEEEEEeCCCCeEEEEEEeC
Confidence            87743      223777777652      22211      112234567799998 7998888888899999999865

>d1rwia_ b.68.9.1 (A:) Serine/threonine-protein kinase PknD {Mycobacterium tuberculosis [TaxId: 1773]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: NHL repeat
family: NHL repeat
domain: Serine/threonine-protein kinase PknD
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.10  E-value=2.9e-08  Score=74.09  Aligned_cols=156  Identities=8%  Similarity=-0.007  Sum_probs=101.2

Q ss_pred             CCeEEEEEecCCCcEEEEEcCCCeEEEEEcCCCCcceEEEeeccCCceeEEEeccCCCCeEEEEcCCCcEEEEecCCCCC
Q 021657           92 DTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTS  171 (309)
Q Consensus        92 ~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~  171 (309)
                      ....++++.+++ +++++-..+..+..++.....  ..............+++++ +++++++...++.|..+|...   
T Consensus        98 ~~p~~iavd~~g-~i~v~d~~~~~~~~~~~~~~~--~~~~~~~~~~~p~~i~~~~-~g~~~v~~~~~~~i~~~d~~~---  170 (260)
T d1rwia_          98 NYPEGLAVDTQG-AVYVADRGNNRVVKLAAGSKT--QTVLPFTGLNDPDGVAVDN-SGNVYVTDTDNNRVVKLEAES---  170 (260)
T ss_dssp             CSEEEEEECTTC-CEEEEEGGGTEEEEECTTCSS--CEECCCCSCCSCCEEEECT-TCCEEEEEGGGTEEEEECTTT---
T ss_pred             eecccccccccc-eeEeeccccccccccccccce--eeeeeecccCCcceeeecC-CCCEeeecccccccccccccc---
Confidence            356889999988 677776677778887765443  2222222234567899999 889888888889999999875   


Q ss_pred             CCCCCceeeeccCCCCeeEEEEecCCCcEEEEecCCCcEEEEeCCcccccccCCCCCcCCCCceeeeecCCCcceeeEEE
Q 021657          172 NGVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKVVDFHW  251 (309)
Q Consensus       172 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~  251 (309)
                         ..........-.....|++.++|. |+++...++.|..++......              ... ....-.....|++
T Consensus       171 ---~~~~~~~~~~~~~p~gi~~d~~g~-l~vsd~~~~~i~~~~~~~~~~--------------~~~-~~~~~~~P~~i~~  231 (260)
T d1rwia_         171 ---NNQVVLPFTDITAPWGIAVDEAGT-VYVTEHNTNQVVKLLAGSTTS--------------TVL-PFTGLNTPLAVAV  231 (260)
T ss_dssp             ---CCEEECCCSSCCSEEEEEECTTCC-EEEEETTTTEEEEECTTCSCC--------------EEC-CCCSCCCEEEEEE
T ss_pred             ---ceeeeeeccccCCCccceeeeeee-eeeeecCCCEEEEEeCCCCeE--------------EEE-ccCCCCCeEEEEE
Confidence               222222223345578899999987 677887788888887654111              011 1112235678999


Q ss_pred             ccCCCeEEEEecCCCCCCCCCCeEEEEEcc
Q 021657          252 NASDPWTVVSVSDDCDSTGGGGTLQIWRMS  281 (309)
Q Consensus       252 ~~~~~~~~~s~s~d~~s~~~dg~v~vw~~~  281 (309)
                      ++++. ++++-..+       ++|+..+..
T Consensus       232 d~~g~-l~vad~~~-------~rI~~i~~~  253 (260)
T d1rwia_         232 DSDRT-VYVADRGN-------DRVVKLTSL  253 (260)
T ss_dssp             CTTCC-EEEEEGGG-------TEEEEECCC
T ss_pred             eCCCC-EEEEECCC-------CEEEEEeCC
Confidence            99876 55543333       566655544

>d1pjxa_ b.68.6.1 (A:) Diisopropylfluorophosphatase (phosphotriesterase, DFP) {Squid (Loligo vulgaris) [TaxId: 6622]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Diisopropylfluorophosphatase (phosphotriesterase, DFP)
species: Squid (Loligo vulgaris) [TaxId: 6622]

Probab=99.06  E-value=1.1e-07  Score=73.00  Aligned_cols=225  Identities=9%  Similarity=0.071  Sum_probs=130.0

Q ss_pred             EEEEECCCCCEEEEecC-------CCcEEEEeCCccccccccCCccccccCCCCceeecCCCCCCCCcccCCCCCcCccc
Q 021657           13 FALAMCPTEPYVLSGGK-------DKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRG   85 (309)
Q Consensus        13 ~~~~~~~~~~~l~t~~~-------dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   85 (309)
                      -.++|+|+|+++++...       +|+|..||.+++.......+                                    
T Consensus        21 EGpa~d~dG~ly~~~~~~~~~~~~~g~I~r~d~~~~~~~~~~~~------------------------------------   64 (314)
T d1pjxa_          21 EGPVFDKNGDFYIVAPEVEVNGKPAGEILRIDLKTGKKTVICKP------------------------------------   64 (314)
T ss_dssp             EEEEECTTSCEEEEETTCEETTEECCEEEEECTTTCCEEEEECC------------------------------------
T ss_pred             eEeEEeCCCCEEEEECccccccccCCEEEEEECCCCcEEEEECC------------------------------------
Confidence            57799999998776433       46788888765422111100                                    


Q ss_pred             ccccccCCeEEEEEecCCCcEEEEEcCCCeEEEEEcCCCCcceEEEee-ccC----CceeEEEeccCCCCeEEEEcC---
Q 021657           86 IYNGHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPVIKVEK-AHD----ADLHCVDWNPLDDNLILTGSA---  157 (309)
Q Consensus        86 ~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~-~~~----~~v~~~~~~~~~~~~l~~~~~---  157 (309)
                      ........-..+.|.+++ ..++++.....|...+.....   ..... ...    ...+.+++.+ ++++.++-..   
T Consensus        65 ~~~~~~g~P~Gl~~~~dg-~~l~vad~~~~i~~~~~~g~~---~~~~~~~~~g~~~~~pndl~~d~-~G~lyvtd~~~~~  139 (314)
T d1pjxa_          65 EVNGYGGIPAGCQCDRDA-NQLFVADMRLGLLVVQTDGTF---EEIAKKDSEGRRMQGCNDCAFDY-EGNLWITAPAGEV  139 (314)
T ss_dssp             EETTEECCEEEEEECSSS-SEEEEEETTTEEEEEETTSCE---EECCSBCTTSCBCBCCCEEEECT-TSCEEEEECBCBC
T ss_pred             ccccCCCcceeEEEeCCC-CEEEEEECCCeEEEEeCCCcE---EEEEeccccccccCCCcEEEECC-CCCEEEecCccCc
Confidence            001112345789999998 556666666678888875443   11111 111    1356789999 8887776432   


Q ss_pred             ------------CCcEEEEecCCCCCCCCCCceeeeccCCCCeeEEEEecCCC----cEEEEecCCCcEEEEeCCccccc
Q 021657          158 ------------DNSVRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWSPDKS----SVFGSSAEDGLLNIWDYEKVGKK  221 (309)
Q Consensus       158 ------------dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~----~l~~~~~~dg~i~iwd~~~~~~~  221 (309)
                                  .|.|..++..       ++... +...-...+.++|+|++.    .|+++-+..+.|..||+...+..
T Consensus       140 ~~~~~~~~~~~~~G~v~~~~~d-------g~~~~-~~~~~~~pNGi~~~~d~d~~~~~lyv~d~~~~~i~~~d~~~~g~~  211 (314)
T d1pjxa_         140 APADYTRSMQEKFGSIYCFTTD-------GQMIQ-VDTAFQFPNGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKI  211 (314)
T ss_dssp             TTSCCCBTTSSSCEEEEEECTT-------SCEEE-EEEEESSEEEEEEEECTTSCEEEEEEEETTTTEEEEEEEEETTEE
T ss_pred             ccccccceeccCCceEEEEeec-------CceeE-eeCCcceeeeeEECCCCCcceeEEEEEeecccceEEeeccCcccc
Confidence                        2234444332       33222 222223457899999875    56777788899999998763332


Q ss_pred             ccCCCCCcCCCCceeeeecC-CCcceeeEEEccCCCeEEEEecCCCCCCCCCCeEEEEEccccccCChhhHhHhhhcccc
Q 021657          222 VEQGPRTTNYPAGLFFQHAG-HRDKVVDFHWNASDPWTVVSVSDDCDSTGGGGTLQIWRMSDLIYRPQDEVLAELEKFKA  300 (309)
Q Consensus       222 ~~~~~~~~~~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~~s~s~d~~s~~~dg~v~vw~~~~~~~~~~~~~~~~~~~h~~  300 (309)
                      ..         .+.+..+.+ +....-.+++..++..+++..+.        +.|.+||..      .++.+..+.....
T Consensus       212 ~~---------~~~~~~~~~~~~~~pdGiavD~~GnlyVa~~~~--------g~I~~~dp~------~g~~~~~i~~p~~  268 (314)
T d1pjxa_         212 EN---------KKVWGHIPGTHEGGADGMDFDEDNNLLVANWGS--------SHIEVFGPD------GGQPKMRIRCPFE  268 (314)
T ss_dssp             EE---------EEEEEECCCCSSCEEEEEEEBTTCCEEEEEETT--------TEEEEECTT------CBSCSEEEECSSS
T ss_pred             ce---------eeEEEEccccccccceeeEEecCCcEEEEEcCC--------CEEEEEeCC------CCEEEEEEECCCC
Confidence            11         111222222 22345679999988755543322        789999877      4444445554445


Q ss_pred             eEEEeeeCC
Q 021657          301 HVISCTSKP  309 (309)
Q Consensus       301 ~v~~~~~~P  309 (309)
                      ...+++|.|
T Consensus       269 ~~t~~afg~  277 (314)
T d1pjxa_         269 KPSNLHFKP  277 (314)
T ss_dssp             CEEEEEECT
T ss_pred             CEEEEEEeC
Confidence            677788765

>d1pjxa_ b.68.6.1 (A:) Diisopropylfluorophosphatase (phosphotriesterase, DFP) {Squid (Loligo vulgaris) [TaxId: 6622]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Diisopropylfluorophosphatase (phosphotriesterase, DFP)
species: Squid (Loligo vulgaris) [TaxId: 6622]

Probab=99.06  E-value=9.4e-08  Score=73.29  Aligned_cols=200  Identities=11%  Similarity=0.114  Sum_probs=121.4

Q ss_pred             EEEEECCCCCEEEEecCCCcEEEEeCCccccccccCCcc--------ccccCCCCceeecCCC-------------CCCC
Q 021657           13 FALAMCPTEPYVLSGGKDKSVVLWSIQDHITSSATDPAT--------AKSAGSSGSIIKQSPK-------------PGDG   71 (309)
Q Consensus        13 ~~~~~~~~~~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~-------------~~~~   71 (309)
                      ..++|++++..|+++...+.|...+.+............        .........+......             ...+
T Consensus        74 ~Gl~~~~dg~~l~vad~~~~i~~~~~~g~~~~~~~~~~~g~~~~~pndl~~d~~G~lyvtd~~~~~~~~~~~~~~~~~~G  153 (314)
T d1pjxa_          74 AGCQCDRDANQLFVADMRLGLLVVQTDGTFEEIAKKDSEGRRMQGCNDCAFDYEGNLWITAPAGEVAPADYTRSMQEKFG  153 (314)
T ss_dssp             EEEEECSSSSEEEEEETTTEEEEEETTSCEEECCSBCTTSCBCBCCCEEEECTTSCEEEEECBCBCTTSCCCBTTSSSCE
T ss_pred             eeEEEeCCCCEEEEEECCCeEEEEeCCCcEEEEEeccccccccCCCcEEEECCCCCEEEecCccCcccccccceeccCCc
Confidence            579999999988888777778888887653222111100        0111111211111100             0011


Q ss_pred             CcccCCCCCcCcccccccccCCeEEEEEecCCC----cEEEEEcCCCeEEEEEcCCCCcce-E---EEeec-cCCceeEE
Q 021657           72 NDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSA----QEFCSVGDDSCLILWDARVGTSPV-I---KVEKA-HDADLHCV  142 (309)
Q Consensus        72 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~----~~l~s~~~dg~i~iwd~~~~~~~~-~---~~~~~-~~~~v~~~  142 (309)
                      .+..++.. .+ ...+...-..-+.++|+|++.    .++++-+..+.|..||+....... .   ..+.. .......|
T Consensus       154 ~v~~~~~d-g~-~~~~~~~~~~pNGi~~~~d~d~~~~~lyv~d~~~~~i~~~d~~~~g~~~~~~~~~~~~~~~~~~pdGi  231 (314)
T d1pjxa_         154 SIYCFTTD-GQ-MIQVDTAFQFPNGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIENKKVWGHIPGTHEGGADGM  231 (314)
T ss_dssp             EEEEECTT-SC-EEEEEEEESSEEEEEEEECTTSCEEEEEEEETTTTEEEEEEEEETTEEEEEEEEEECCCCSSCEEEEE
T ss_pred             eEEEEeec-Cc-eeEeeCCcceeeeeEECCCCCcceeEEEEEeecccceEEeeccCccccceeeEEEEccccccccceee
Confidence            11111111 11 111222223346789998763    356666788999999876443111 1   11111 22345689


Q ss_pred             EeccCCCCeEEEEcCCCcEEEEecCCCCCCCCCCceeeeccCCCCeeEEEEecCCCcEEEEecCCCcEEEEeCCccccc
Q 021657          143 DWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKK  221 (309)
Q Consensus       143 ~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~dg~i~iwd~~~~~~~  221 (309)
                      ++.+ +++++++....+.|.+||.+.      +..+..+.......++++|.|+++.|+++.+.+|.|..+++...+++
T Consensus       232 avD~-~GnlyVa~~~~g~I~~~dp~~------g~~~~~i~~p~~~~t~~afg~d~~~lyVt~~~~g~i~~~~~~~~G~~  303 (314)
T d1pjxa_         232 DFDE-DNNLLVANWGSSHIEVFGPDG------GQPKMRIRCPFEKPSNLHFKPQTKTIFVTEHENNAVWKFEWQRNGKK  303 (314)
T ss_dssp             EEBT-TCCEEEEEETTTEEEEECTTC------BSCSEEEECSSSCEEEEEECTTSSEEEEEETTTTEEEEEECSSCBCC
T ss_pred             EEec-CCcEEEEEcCCCEEEEEeCCC------CEEEEEEECCCCCEEEEEEeCCCCEEEEEECCCCcEEEEECCCCChh
Confidence            9999 899888888889999999887      66666666656678999999999888888888999999998875543

>d2p4oa1 b.68.6.3 (A:4-305) Hypothetical protein All0351 homologue {Nostoc punctiforme [TaxId: 272131]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: All0351-like
domain: Hypothetical protein All0351 homologue
species: Nostoc punctiforme [TaxId: 272131]

Probab=98.87  E-value=7.2e-07  Score=67.89  Aligned_cols=194  Identities=8%  Similarity=-0.018  Sum_probs=121.1

Q ss_pred             ceEEEEECCCCCEEEEecCCCcEEEEeCCccccccccCCccccccCCCCceeecCCCCCCCCcccCCCCCcCcccccccc
Q 021657           11 AEFALAMCPTEPYVLSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGH   90 (309)
Q Consensus        11 ~V~~~~~~~~~~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   90 (309)
                      .+.+++|+|+|+++++...++.+.+|+........                                    ..+.. ...
T Consensus        69 ~~~gla~~~dG~l~v~~~~~~~~~~~~~~~~~~~~------------------------------------~~~~~-~~~  111 (302)
T d2p4oa1          69 KVSGLAFTSNGDLVATGWNADSIPVVSLVKSDGTV------------------------------------ETLLT-LPD  111 (302)
T ss_dssp             EEEEEEECTTSCEEEEEECTTSCEEEEEECTTSCE------------------------------------EEEEE-CTT
T ss_pred             CcceEEEcCCCCeEEEecCCceEEEEEecccccce------------------------------------eeccc-cCC
Confidence            67899999999999988888888888865321000                                    00000 113


Q ss_pred             cCCeEEEEEecCCCcEEEEEcCCCeEEEEEcCCCCcceEEEe--------eccCCceeEEEeccCCCCeEEEEcCCCcEE
Q 021657           91 EDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPVIKVE--------KAHDADLHCVDWNPLDDNLILTGSADNSVR  162 (309)
Q Consensus        91 ~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~--------~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~  162 (309)
                      ....+.+.+.+++ +++++-+.++.+..+|...+.......-        .........+.++.  +.++++.+..+.|+
T Consensus       112 ~~~~n~i~~~~~g-~~~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ngi~~~~--~~l~~~~~~~~~i~  188 (302)
T d2p4oa1         112 AIFLNGITPLSDT-QYLTADSYRGAIWLIDVVQPSGSIWLEHPMLARSNSESVFPAANGLKRFG--NFLYVSNTEKMLLL  188 (302)
T ss_dssp             CSCEEEEEESSSS-EEEEEETTTTEEEEEETTTTEEEEEEECGGGSCSSTTCCSCSEEEEEEET--TEEEEEETTTTEEE
T ss_pred             ccccceeEEccCC-CEEeeccccccceeeeccCCcceeEecCCccceeeccCcccccccccccC--CceeeecCCCCeEE
Confidence            3457899999998 8888888889998888876542111110        01112345566653  55677777888999


Q ss_pred             EEecCCCCCCCCCCceeeeccCCCCeeEEEEecCCCcEEEEecCCCcEEEEeCCcccccccCCCCCcCCCCceeeeecCC
Q 021657          163 MFDRRNLTSNGVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGH  242 (309)
Q Consensus       163 i~d~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~  242 (309)
                      .++......   ......+. .......+++.++|. ++++...++.|..++...  +            ...+......
T Consensus       189 ~~~~~~~~~---~~~~~~~~-~~~~pdgia~d~dG~-l~va~~~~~~V~~i~p~G--~------------~~~~~~~~~~  249 (302)
T d2p4oa1         189 RIPVDSTDK---PGEPEIFV-EQTNIDDFAFDVEGN-LYGATHIYNSVVRIAPDR--S------------TTIIAQAEQG  249 (302)
T ss_dssp             EEEBCTTSC---BCCCEEEE-ESCCCSSEEEBTTCC-EEEECBTTCCEEEECTTC--C------------EEEEECGGGT
T ss_pred             ecccccccc---cccccccc-CCCCCcceEECCCCC-EEEEEcCCCcEEEECCCC--C------------EEEEEecCCC
Confidence            888876321   11111111 233456799999998 666777788888887654  1            0112222333


Q ss_pred             CcceeeEEE---ccCCCeEEEEec
Q 021657          243 RDKVVDFHW---NASDPWTVVSVS  263 (309)
Q Consensus       243 ~~~v~~~~~---~~~~~~~~~s~s  263 (309)
                      -...++++|   +++++.|+++.+
T Consensus       250 ~~~pt~vafg~~~~D~~~Lyvtt~  273 (302)
T d2p4oa1         250 VIGSTAVAFGQTEGDCTAIYVVTN  273 (302)
T ss_dssp             CTTEEEEEECCSTTTTTEEEEEEC
T ss_pred             CCCceEEEEcCCCCCCCEEEEECC
Confidence            345789999   667777777643

>d2ghsa1 b.68.6.1 (A:20-314) Regucalcin {Agrobacterium tumefaciens [TaxId: 358]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Regucalcin
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=98.81  E-value=9.1e-06  Score=61.34  Aligned_cols=184  Identities=12%  Similarity=0.084  Sum_probs=113.5

Q ss_pred             cCCeEEEEEecCCCcEEEEEcCCCeEEEEEcCCCCcceEEEeecc--CCceeEEEeccCCCCeEEEEcC----CCcEEEE
Q 021657           91 EDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPVIKVEKAH--DADLHCVDWNPLDDNLILTGSA----DNSVRMF  164 (309)
Q Consensus        91 ~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~--~~~v~~~~~~~~~~~~l~~~~~----dg~i~i~  164 (309)
                      ...+.++.+.+++ .++++ +.+ .|.++|..+++..........  ...++.+.+.| ++++.++...    .+.-.+|
T Consensus        58 ~~~~~~i~~~~dg-~l~va-~~~-gl~~~d~~tg~~~~l~~~~~~~~~~~~nd~~vd~-~G~iw~~~~~~~~~~~~g~l~  133 (295)
T d2ghsa1          58 PFMGSALAKISDS-KQLIA-SDD-GLFLRDTATGVLTLHAELESDLPGNRSNDGRMHP-SGALWIGTMGRKAETGAGSIY  133 (295)
T ss_dssp             SSCEEEEEEEETT-EEEEE-ETT-EEEEEETTTCCEEEEECSSTTCTTEEEEEEEECT-TSCEEEEEEETTCCTTCEEEE
T ss_pred             CCCcEEEEEecCC-CEEEE-EeC-ccEEeecccceeeEEeeeecCCCcccceeeEECC-CCCEEEEeccccccccceeEe
Confidence            3467889998887 65554 455 588999988873222111111  12478888999 8887666432    2344566


Q ss_pred             ecCCCCCCCCCCceeeeccCCCCeeEEEEecCCCcEEEEecCCCcEEEEeCCcccccccCCCCCcCCCCceeeeecCCCc
Q 021657          165 DRRNLTSNGVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRD  244 (309)
Q Consensus       165 d~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  244 (309)
                      .+..      ++...... .-...+.++|+++++.++++-+..+.|..|++........       ..........+...
T Consensus       134 ~~~~------g~~~~~~~-~~~~~Ng~~~s~d~~~l~~~dt~~~~I~~~~~d~~~~~~~-------~~~~~~~~~~~~~g  199 (295)
T d2ghsa1         134 HVAK------GKVTKLFA-DISIPNSICFSPDGTTGYFVDTKVNRLMRVPLDARTGLPT-------GKAEVFIDSTGIKG  199 (295)
T ss_dssp             EEET------TEEEEEEE-EESSEEEEEECTTSCEEEEEETTTCEEEEEEBCTTTCCBS-------SCCEEEEECTTSSS
T ss_pred             eecC------CcEEEEee-ccCCcceeeecCCCceEEEeecccceeeEeeecccccccc-------cceEEEeccCcccc
Confidence            6655      44333333 2345678999999998888888899999999865222111       01122233344455


Q ss_pred             ceeeEEEccCCCeEEEEecCCCCCCCCCCeEEEEEccccccCChhhHhHhhhcccceEEEeee
Q 021657          245 KVVDFHWNASDPWTVVSVSDDCDSTGGGGTLQIWRMSDLIYRPQDEVLAELEKFKAHVISCTS  307 (309)
Q Consensus       245 ~v~~~~~~~~~~~~~~s~s~d~~s~~~dg~v~vw~~~~~~~~~~~~~~~~~~~h~~~v~~~~~  307 (309)
                      ....+++..+|...++.-..        +.|..||-.       ++.+..+.-....+++++|
T Consensus       200 ~pdG~~vD~~GnlWva~~~~--------g~V~~~dp~-------G~~~~~i~lP~~~~T~~~F  247 (295)
T d2ghsa1         200 GMDGSVCDAEGHIWNARWGE--------GAVDRYDTD-------GNHIARYEVPGKQTTCPAF  247 (295)
T ss_dssp             EEEEEEECTTSCEEEEEETT--------TEEEEECTT-------CCEEEEEECSCSBEEEEEE
T ss_pred             cccceEEcCCCCEEeeeeCC--------CceEEecCC-------CcEeeEecCCCCceEEEEE
Confidence            67889999988765543222        678888854       5555555433345777776

>d1xfda1 b.70.3.1 (A:127-591) Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: DPP6 N-terminal domain-like
family: DPP6 N-terminal domain-like
domain: Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.76  E-value=1e-07  Score=77.26  Aligned_cols=116  Identities=15%  Similarity=0.255  Sum_probs=73.7

Q ss_pred             CeEEEEEecCCCcEEEEE--------cCCCeEEEEEcCCCCcceEEEeeccCCceeEEEeccCCCCeEEEEcCCCcEEEE
Q 021657           93 TVEDVTFCPSSAQEFCSV--------GDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMF  164 (309)
Q Consensus        93 ~v~~~~~~~~~~~~l~s~--------~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~  164 (309)
                      .+....|+||+..+++..        +..+.+.++|+.++....+.........+....|+| +|+.+|-.. ++.|.+.
T Consensus        62 ~~~~~~~SpD~~~vl~~~~~~~~~r~s~~~~~~i~d~~~~~~~~l~~~~~~~~~l~~~~wSP-DG~~iafv~-~~nl~~~  139 (465)
T d1xfda1          62 RAIRYEISPDREYALFSYNVEPIYQHSYTGYYVLSKIPHGDPQSLDPPEVSNAKLQYAGWGP-KGQQLIFIF-ENNIYYC  139 (465)
T ss_dssp             TCSEEEECTTSSEEEEEESCCCCSSSCCCSEEEEEESSSCCCEECCCTTCCSCCCSBCCBCS-STTCEEEEE-TTEEEEE
T ss_pred             ccceeEECCCCCeEEEEEcccceeEeeccccEEEEEccCCceeeccCccCCccccceeeecc-CCceEEEEe-cceEEEE
Confidence            456778999994444432        335789999999887322222223345567789999 898887764 6788888


Q ss_pred             ecCCCCCCCCCCceeeec-cCCCC-----------------eeEEEEecCCCcEEEEecCCCcEEEEeCC
Q 021657          165 DRRNLTSNGVGSPINKFE-GHSAA-----------------VLCVQWSPDKSSVFGSSAEDGLLNIWDYE  216 (309)
Q Consensus       165 d~~~~~~~~~~~~~~~~~-~~~~~-----------------v~~~~~~~~~~~l~~~~~~dg~i~iwd~~  216 (309)
                      +...      +..++... +....                 -..+.|||||++|+..--.+..+..+.+.
T Consensus       140 ~~~~------~~~~~lt~~g~~~~i~nG~~d~vyeee~~~~~~a~~WSPDgk~iaf~~~D~s~V~~~~~~  203 (465)
T d1xfda1         140 AHVG------KQAIRVVSTGKEGVIYNGLSDWLYEEEILKTHIAHWWSPDGTRLAYAAINDSRVPIMELP  203 (465)
T ss_dssp             SSSS------SCCEEEECCCBTTTEEEEECCHHHHHTTSSSSEEEEECTTSSEEEEEEEECTTSCEEEEC
T ss_pred             ecCC------CceEEEecccCcceeeccccchhhhhhhccccceEEECCCCCeEEEEEecccccceeecc
Confidence            8776      33333222 11111                 24678999999866554455666666554

>d2hqsa1 b.68.4.1 (A:163-431) TolB, C-terminal domain {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: TolB, C-terminal domain
family: TolB, C-terminal domain
domain: TolB, C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=98.71  E-value=3e-06  Score=63.02  Aligned_cols=168  Identities=11%  Similarity=0.141  Sum_probs=101.3

Q ss_pred             ccccccccCCeEEEEEecCCCcEEEEEcCCC--eEEEEEcCCCCcceEEEeeccCCceeEEEeccCCCCeEEEEcC-CCc
Q 021657           84 RGIYNGHEDTVEDVTFCPSSAQEFCSVGDDS--CLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSA-DNS  160 (309)
Q Consensus        84 ~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg--~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~-dg~  160 (309)
                      ...+..+...+...+|+|||+.+.++....+  .+.+.+...+.   ......+........|+| ++..++.... ++.
T Consensus        31 ~~~l~~~~~~~~sP~wSPDGk~IAf~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~sp-dg~~i~~~~~~~~~  106 (269)
T d2hqsa1          31 QFVVHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGA---VRQVASFPRHNGAPAFSP-DGSKLAFALSKTGS  106 (269)
T ss_dssp             CEEEEEESSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCC---EEEEECCSSCEEEEEECT-TSSEEEEEECTTSS
T ss_pred             cEEEecCCCceeeeEECCCCCEEEEEEeeccCcceeeeecccCc---eeEEeeeecccccceecC-CCCeeeEeeecCCc
Confidence            3444456677889999999955444544444  45566665555   445556778888999999 8887766543 444


Q ss_pred             EEEEecCCCCCCCCCCceeeeccCCCCeeEEEEecCCCcEEEEecCCCcEEEEeCCcccccccCCCCCcCCCCceeeeec
Q 021657          161 VRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHA  240 (309)
Q Consensus       161 i~i~d~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~  240 (309)
                      ..++.....     ..................+++++..++.+...++...+|.......              ......
T Consensus       107 ~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~i~~~~~~~~--------------~~~~~~  167 (269)
T d2hqsa1         107 LNLYVMDLA-----SGQIRQVTDGRSNNTEPTWFPDSQNLAFTSDQAGRPQVYKVNINGG--------------APQRIT  167 (269)
T ss_dssp             CEEEEEETT-----TCCEEECCCCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTSS--------------CCEECC
T ss_pred             cceeecccc-----cccceeeeeccccccccccccccccceecccccCCceEeeeecccc--------------cceeee
Confidence            333333321     2222233334444556678888887777777777655555443111              112223


Q ss_pred             CCCcceeeEEEccCCCeEEEEecCCCCCCCCCCeEEEEEcc
Q 021657          241 GHRDKVVDFHWNASDPWTVVSVSDDCDSTGGGGTLQIWRMS  281 (309)
Q Consensus       241 ~~~~~v~~~~~~~~~~~~~~s~s~d~~s~~~dg~v~vw~~~  281 (309)
                      ..........|+|++..++......       +...+|...
T Consensus       168 ~~~~~~~~~~~spdg~~~~~~~~~~-------~~~~i~~~~  201 (269)
T d2hqsa1         168 WEGSQNQDADVSSDGKFMVMVSSNG-------GQQHIAKQD  201 (269)
T ss_dssp             CSSSEEEEEEECTTSSEEEEEEECS-------SCEEEEEEE
T ss_pred             cccccccccccccccceeEEEeecC-------CceeeeEee
Confidence            4455677889999999887765544       555666555

>d1q7fa_ b.68.9.1 (A:) Brain tumor cg10719-pa {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: NHL repeat
family: NHL repeat
domain: Brain tumor cg10719-pa
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=98.64  E-value=6.5e-06  Score=61.67  Aligned_cols=114  Identities=18%  Similarity=0.269  Sum_probs=83.7

Q ss_pred             ccCCeEEEEEecCCCcEEEEEcCCCeEEEEEcCCCCcceEEEee--ccCCceeEEEeccCCCCeEEEEcC-CCcEEEEec
Q 021657           90 HEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPVIKVEK--AHDADLHCVDWNPLDDNLILTGSA-DNSVRMFDR  166 (309)
Q Consensus        90 ~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~--~~~~~v~~~~~~~~~~~~l~~~~~-dg~i~i~d~  166 (309)
                      +......+++.+++ .++++....+.|.+||.. ++  ....+.  +.......|++++ +++++++-.. ++.|.+|+.
T Consensus       155 ~~~~~~~i~~d~~g-~i~v~d~~~~~V~~~d~~-G~--~~~~~g~~g~~~~P~giavD~-~G~i~Vad~~~~~~v~~f~~  229 (279)
T d1q7fa_         155 HLEFPNGVVVNDKQ-EIFISDNRAHCVKVFNYE-GQ--YLRQIGGEGITNYPIGVGINS-NGEILIADNHNNFNLTIFTQ  229 (279)
T ss_dssp             TCSSEEEEEECSSS-EEEEEEGGGTEEEEEETT-CC--EEEEESCTTTSCSEEEEEECT-TCCEEEEECSSSCEEEEECT
T ss_pred             cccccceeeeccce-eEEeeeccccceeeeecC-Cc--eeeeecccccccCCccccccc-CCeEEEEECCCCcEEEEECC
Confidence            45567889999988 788888889999999974 44  344432  3345678999999 8887777544 457999984


Q ss_pred             CCCCCCCCCCceeeeccC--CCCeeEEEEecCCCcEEEEecCCCcEEEEeCCc
Q 021657          167 RNLTSNGVGSPINKFEGH--SAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEK  217 (309)
Q Consensus       167 ~~~~~~~~~~~~~~~~~~--~~~v~~~~~~~~~~~l~~~~~~dg~i~iwd~~~  217 (309)
                      .       ++.+..+...  ......|++.|+|. |++ ++.++.|++|....
T Consensus       230 ~-------G~~~~~~~~~~~~~~p~~vav~~dG~-l~V-~~~n~~v~~fr~~~  273 (279)
T d1q7fa_         230 D-------GQLISALESKVKHAQCFDVALMDDGS-VVL-ASKDYRLYIYRYVQ  273 (279)
T ss_dssp             T-------SCEEEEEEESSCCSCEEEEEEETTTE-EEE-EETTTEEEEEECSC
T ss_pred             C-------CCEEEEEeCCCCCCCEeEEEEeCCCc-EEE-EeCCCeEEEEEeee
Confidence            3       6777666432  34578999999997 554 45689999999876

>d2dg1a1 b.68.6.1 (A:6-324) Lactonase Drp35 {Staphylococcus aureus [TaxId: 1280]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Lactonase Drp35
species: Staphylococcus aureus [TaxId: 1280]

Probab=98.56  E-value=2.4e-05  Score=59.69  Aligned_cols=157  Identities=8%  Similarity=0.030  Sum_probs=99.2

Q ss_pred             cCCeEEEEEecCCCcEEEEEcCCCeEEEEEcCCCCcceEEEeeccCCceeEEEeccCCCCeEEEEcCC----CcEEEEec
Q 021657           91 EDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSAD----NSVRMFDR  166 (309)
Q Consensus        91 ~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d----g~i~i~d~  166 (309)
                      ...+..++|.++| +++++-...+.|.-|+.....  ..............+++++ +++++++...+    +.+...+.
T Consensus        39 ~~~lEG~~~D~~G-~Ly~~D~~~g~I~ri~p~g~~--~~~~~~~~~~~p~gla~~~-dG~l~va~~~~~~~~~~i~~~~~  114 (319)
T d2dg1a1          39 GLQLEGLNFDRQG-QLFLLDVFEGNIFKINPETKE--IKRPFVSHKANPAAIKIHK-DGRLFVCYLGDFKSTGGIFAATE  114 (319)
T ss_dssp             CCCEEEEEECTTS-CEEEEETTTCEEEEECTTTCC--EEEEEECSSSSEEEEEECT-TSCEEEEECTTSSSCCEEEEECT
T ss_pred             CcCcEeCEECCCC-CEEEEECCCCEEEEEECCCCe--EEEEEeCCCCCeeEEEECC-CCCEEEEecCCCccceeEEEEcC
Confidence            3456789999998 778888889999999987665  4444445556788999999 88888776432    33444554


Q ss_pred             CCCCCCCCCCceeeec--cCCCCeeEEEEecCCCcEEEEecCC------CcEEEEeCCcccccccCCCCCcCCCCceeee
Q 021657          167 RNLTSNGVGSPINKFE--GHSAAVLCVQWSPDKSSVFGSSAED------GLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQ  238 (309)
Q Consensus       167 ~~~~~~~~~~~~~~~~--~~~~~v~~~~~~~~~~~l~~~~~~d------g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~  238 (309)
                      ..      ........  ......+.+++.++|+ ++++....      +.+..++...  .              .+..
T Consensus       115 ~~------~~~~~~~~~~~~~~~~nd~~~d~~G~-l~vtd~~~~~~~~~g~v~~~~~dg--~--------------~~~~  171 (319)
T d2dg1a1         115 NG------DNLQDIIEDLSTAYCIDDMVFDSKGG-FYFTDFRGYSTNPLGGVYYVSPDF--R--------------TVTP  171 (319)
T ss_dssp             TS------CSCEEEECSSSSCCCEEEEEECTTSC-EEEEECCCBTTBCCEEEEEECTTS--C--------------CEEE
T ss_pred             CC------ceeeeeccCCCcccCCcceeEEeccc-eeecccccccccCcceeEEEeccc--c--------------eeEE
Confidence            44      33222222  1234578899999998 45443221      2233333221  1              1111


Q ss_pred             ecCCCcceeeEEEccCCCeEEEEecCCCCCCCCCCeEEEEEcc
Q 021657          239 HAGHRDKVVDFHWNASDPWTVVSVSDDCDSTGGGGTLQIWRMS  281 (309)
Q Consensus       239 ~~~~~~~v~~~~~~~~~~~~~~s~s~d~~s~~~dg~v~vw~~~  281 (309)
                      ....-...+.++|+|++..++++-+..       +.|..|++.
T Consensus       172 ~~~~~~~pnGia~s~dg~~lyvad~~~-------~~I~~~d~~  207 (319)
T d2dg1a1         172 IIQNISVANGIALSTDEKVLWVTETTA-------NRLHRIALE  207 (319)
T ss_dssp             EEEEESSEEEEEECTTSSEEEEEEGGG-------TEEEEEEEC
T ss_pred             EeeccceeeeeeeccccceEEEecccC-------CceEEEEEc
Confidence            111223457899999999888876665       889999876

>d2ghsa1 b.68.6.1 (A:20-314) Regucalcin {Agrobacterium tumefaciens [TaxId: 358]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Regucalcin
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=98.44  E-value=0.00013  Score=54.88  Aligned_cols=149  Identities=10%  Similarity=0.072  Sum_probs=92.6

Q ss_pred             CeEEEEEecCCCcEEEEEcC----CCeEEEEEcCCCCcceEEEeeccCCceeEEEeccCCCC-eEEEEcCCCcEEEEecC
Q 021657           93 TVEDVTFCPSSAQEFCSVGD----DSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDN-LILTGSADNSVRMFDRR  167 (309)
Q Consensus        93 ~v~~~~~~~~~~~~l~s~~~----dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~-~l~~~~~dg~i~i~d~~  167 (309)
                      .++++.+.|+| ++.++...    .+.-.+|.+..++  ...... .-.....++|++ +++ ++++-+..+.|..|++.
T Consensus       104 ~~nd~~vd~~G-~iw~~~~~~~~~~~~g~l~~~~~g~--~~~~~~-~~~~~Ng~~~s~-d~~~l~~~dt~~~~I~~~~~d  178 (295)
T d2ghsa1         104 RSNDGRMHPSG-ALWIGTMGRKAETGAGSIYHVAKGK--VTKLFA-DISIPNSICFSP-DGTTGYFVDTKVNRLMRVPLD  178 (295)
T ss_dssp             EEEEEEECTTS-CEEEEEEETTCCTTCEEEEEEETTE--EEEEEE-EESSEEEEEECT-TSCEEEEEETTTCEEEEEEBC
T ss_pred             cceeeEECCCC-CEEEEeccccccccceeEeeecCCc--EEEEee-ccCCcceeeecC-CCceEEEeecccceeeEeeec
Confidence            57889999998 55444322    2344566665554  333332 234567899999 666 55666678899999875


Q ss_pred             CCCCCCCCC--ceeeeccCCCCeeEEEEecCCCcEEEEecCCCcEEEEeCCcccccccCCCCCcCCCCceeeeecCCCcc
Q 021657          168 NLTSNGVGS--PINKFEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDK  245 (309)
Q Consensus       168 ~~~~~~~~~--~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  245 (309)
                      ........+  ....+....+....+++..+|. |.++.-..+.|..||-..                +.+..+.-....
T Consensus       179 ~~~~~~~~~~~~~~~~~~~~g~pdG~~vD~~Gn-lWva~~~~g~V~~~dp~G----------------~~~~~i~lP~~~  241 (295)
T d2ghsa1         179 ARTGLPTGKAEVFIDSTGIKGGMDGSVCDAEGH-IWNARWGEGAVDRYDTDG----------------NHIARYEVPGKQ  241 (295)
T ss_dssp             TTTCCBSSCCEEEEECTTSSSEEEEEEECTTSC-EEEEEETTTEEEEECTTC----------------CEEEEEECSCSB
T ss_pred             ccccccccceEEEeccCcccccccceEEcCCCC-EEeeeeCCCceEEecCCC----------------cEeeEecCCCCc
Confidence            422111011  1122333455678899999998 565555678899999543                233344444456


Q ss_pred             eeeEEEc-cCCCeEEEEec
Q 021657          246 VVDFHWN-ASDPWTVVSVS  263 (309)
Q Consensus       246 v~~~~~~-~~~~~~~~s~s  263 (309)
                      +++++|- |+...|+++..
T Consensus       242 ~T~~~FGG~d~~~LyvTta  260 (295)
T d2ghsa1         242 TTCPAFIGPDASRLLVTSA  260 (295)
T ss_dssp             EEEEEEESTTSCEEEEEEB
T ss_pred             eEEEEEeCCCCCEEEEEEC
Confidence            8999995 67778888654

>d1xfda1 b.70.3.1 (A:127-591) Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: DPP6 N-terminal domain-like
family: DPP6 N-terminal domain-like
domain: Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.44  E-value=4.8e-05  Score=61.20  Aligned_cols=172  Identities=12%  Similarity=0.072  Sum_probs=93.2

Q ss_pred             CCeEEEEEecCCCcEEEEE-cCC---CeEEEEEcCCCCcceEEEeeccCCc----eeEEEeccCCCCeEE---EEcCCC-
Q 021657           92 DTVEDVTFCPSSAQEFCSV-GDD---SCLILWDARVGTSPVIKVEKAHDAD----LHCVDWNPLDDNLIL---TGSADN-  159 (309)
Q Consensus        92 ~~v~~~~~~~~~~~~l~s~-~~d---g~i~iwd~~~~~~~~~~~~~~~~~~----v~~~~~~~~~~~~l~---~~~~dg-  159 (309)
                      .-+..+.|.+++ .+++.. ..+   ..|.++|..+++...+... .....    -....|+| ++..++   ....+| 
T Consensus       255 ~y~~~~~W~~d~-~~~~~~~nR~q~~~~i~~~d~~tg~~~~~~~e-~~~~wv~~~~~~p~~~~-dg~~~~fi~~se~~g~  331 (465)
T d1xfda1         255 YYITMVKWATST-KVAVTWLNRAQNVSILTLCDATTGVCTKKHED-ESEAWLHRQNEEPVFSK-DGRKFFFIRAIPQGGR  331 (465)
T ss_dssp             EEEEEEEESSSS-EEEEEEEETTSCEEEEEEEETTTCCEEEEEEE-ECSSCCCCCCCCCEECT-TSCSEEEEEEECCSSS
T ss_pred             ceeeeeEEcCCC-eEEEEEEccccccceEEEEcCCCCcEEEEEEE-cCCceEeccCCceeEcc-CCCeeEEEEeeeeccc
Confidence            347788999988 555443 222   3688889988873322221 12221    23457888 776432   222233 


Q ss_pred             -cEEEEecCCCCCCCCCCceeeeccCCCCeeEE-EEecCCCcEEEEecCCC--cEEEEeCCcccccccCCCCCcCCCCce
Q 021657          160 -SVRMFDRRNLTSNGVGSPINKFEGHSAAVLCV-QWSPDKSSVFGSSAEDG--LLNIWDYEKVGKKVEQGPRTTNYPAGL  235 (309)
Q Consensus       160 -~i~i~d~~~~~~~~~~~~~~~~~~~~~~v~~~-~~~~~~~~l~~~~~~dg--~i~iwd~~~~~~~~~~~~~~~~~~~~~  235 (309)
                       .++.+++........++.+..+....-.|..+ +|+++++.++.++..++  .-++|.+...+...          .++
T Consensus       332 ~~ly~~~~~~~~~~~~~~~~~~LT~G~w~V~~i~~~d~~~~~vyF~a~~~~p~~~hly~v~l~g~~~----------~~~  401 (465)
T d1xfda1         332 GKFYHITVSSSQPNSSNDNIQSITSGDWDVTKILAYDEKGNKIYFLSTEDLPRRRQLYSANTVGNFN----------RQC  401 (465)
T ss_dssp             SCEEEEEEECSSCCSSSCCCCBSCCSSSCEEEEEEEETTTTEEEEEESSSCTTCCEEEEECSSTTCC----------CBC
T ss_pred             CceEEEEeccccccCCCceeEEeccCCceEEEEEEEcCCCCEEEEEEeCCCCCceEEEEEECCCCCc----------cee
Confidence             44444443211111144455555455556665 68998888776776543  34566665432211          111


Q ss_pred             eeeecCCCcceeeEEEccCCCeEEEEecCCCCCCCCCCeEEEEEcc
Q 021657          236 FFQHAGHRDKVVDFHWNASDPWTVVSVSDDCDSTGGGGTLQIWRMS  281 (309)
Q Consensus       236 ~~~~~~~~~~v~~~~~~~~~~~~~~s~s~d~~s~~~dg~v~vw~~~  281 (309)
                      +...........++.|||++.+++.+++.     -.--.+.+++..
T Consensus       402 lt~~~~~~~~~~~~~~S~~~~y~v~~~s~-----~~~P~~~~~~~~  442 (465)
T d1xfda1         402 LSCDLVENCTYFSASFSHSMDFFLLKCEG-----PGVPMVTVHNTT  442 (465)
T ss_dssp             SSTTSSSSCCCCEEEECTTSSEEEEECCS-----SSSCCEEEEETT
T ss_pred             eccccCCCCCEEEEEECCCCCEEEEEeec-----CCCCeEEEEECC
Confidence            11111233456789999999999987753     222356666655

>d1npea_ b.68.5.1 (A:) Nidogen {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: YWTD domain
family: YWTD domain
domain: Nidogen
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.08  E-value=0.00081  Score=49.33  Aligned_cols=166  Identities=6%  Similarity=-0.020  Sum_probs=106.0

Q ss_pred             ccccCCeEEEEEecCCCcEEEEEcCCCeEEEEEcCCCCcceEEEeeccCCceeEEEeccCCCCeEEEEcCCCcEEEEecC
Q 021657           88 NGHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRR  167 (309)
Q Consensus        88 ~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~  167 (309)
                      ..+...+..++|.+.++.++.+-..++.|+..++....  ...........+.+++++...+++..+-...+.|.+.++.
T Consensus        32 ~~~~~~~~~ld~D~~~~~iywsd~~~~~I~~~~l~g~~--~~~v~~~~~~~p~~iAvD~~~~~lY~~d~~~~~I~~~~~d  109 (263)
T d1npea_          32 HIPAKVIIGLAFDCVDKVVYWTDISEPSIGRASLHGGE--PTTIIRQDLGSPEGIALDHLGRTIFWTDSQLDRIEVAKMD  109 (263)
T ss_dssp             EEEEEEEEEEEEETTTTEEEEEETTTTEEEEEESSSCC--CEEEECTTCCCEEEEEEETTTTEEEEEETTTTEEEEEETT
T ss_pred             ccCCCcEEEEEEEeCCCEEEEEECCCCeEEEEEcccCC--cEEEEEeccccccEEEEeccCCeEEEeccCCCEEEEEecC
Confidence            33445678899998875677777788899999987655  3333333345688999987355555666677899999987


Q ss_pred             CCCCCCCCCceeeeccCCCCeeEEEEecCCCcEEEEecCCCcEEEEeCCcccccccCCCCCcCCCCceeeeecCCCccee
Q 021657          168 NLTSNGVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKVV  247 (309)
Q Consensus       168 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~  247 (309)
                      .      ......+......+..+++.|...+++.+-...+..+|+.....+....           .+  ....-....
T Consensus       110 g------~~~~~l~~~~l~~p~~l~vdp~~g~ly~t~~~~~~~~I~r~~~dG~~~~-----------~i--~~~~~~~P~  170 (263)
T d1npea_         110 G------TQRRVLFDTGLVNPRGIVTDPVRGNLYWTDWNRDNPKIETSHMDGTNRR-----------IL--AQDNLGLPN  170 (263)
T ss_dssp             S------CSCEEEECSSCSSEEEEEEETTTTEEEEEECCSSSCEEEEEETTSCCCE-----------EE--ECTTCSCEE
T ss_pred             C------ceEEEEecccccCCcEEEEecccCcEEEeecCCCCcEEEEecCCCCCce-----------ee--eeecccccc
Confidence            5      3322223333456889999999888876654334445554443222111           11  112223557


Q ss_pred             eEEEccCCCeEEEEecCCCCCCCCCCeEEEEEcc
Q 021657          248 DFHWNASDPWTVVSVSDDCDSTGGGGTLQIWRMS  281 (309)
Q Consensus       248 ~~~~~~~~~~~~~s~s~d~~s~~~dg~v~vw~~~  281 (309)
                      ++++++.++.|+.+-+..       +.|...++.
T Consensus       171 glaiD~~~~~lYw~d~~~-------~~I~~~~~~  197 (263)
T d1npea_         171 GLTFDAFSSQLCWVDAGT-------HRAECLNPA  197 (263)
T ss_dssp             EEEEETTTTEEEEEETTT-------TEEEEEETT
T ss_pred             eEEEeecCcEEEEEeCCC-------CEEEEEECC
Confidence            888988888777654433       678777776

>d1npea_ b.68.5.1 (A:) Nidogen {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: YWTD domain
family: YWTD domain
domain: Nidogen
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.01  E-value=0.0011  Score=48.54  Aligned_cols=157  Identities=6%  Similarity=-0.062  Sum_probs=96.1

Q ss_pred             CCeEEEEEecCCCcEEEEEcCCCeEEEEEcCCCCcceEEEeeccCCceeEEEeccCCCCeEEEEcCCCc--EEEEecCCC
Q 021657           92 DTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNS--VRMFDRRNL  169 (309)
Q Consensus        92 ~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~--i~i~d~~~~  169 (309)
                      ..+.++++...++++..+-...+.|.+.++....  ..............++++|..+.++.+-...+.  |.-.++.. 
T Consensus        79 ~~p~~iAvD~~~~~lY~~d~~~~~I~~~~~dg~~--~~~l~~~~l~~p~~l~vdp~~g~ly~t~~~~~~~~I~r~~~dG-  155 (263)
T d1npea_          79 GSPEGIALDHLGRTIFWTDSQLDRIEVAKMDGTQ--RRVLFDTGLVNPRGIVTDPVRGNLYWTDWNRDNPKIETSHMDG-  155 (263)
T ss_dssp             CCEEEEEEETTTTEEEEEETTTTEEEEEETTSCS--CEEEECSSCSSEEEEEEETTTTEEEEEECCSSSCEEEEEETTS-
T ss_pred             ccccEEEEeccCCeEEEeccCCCEEEEEecCCce--EEEEecccccCCcEEEEecccCcEEEeecCCCCcEEEEecCCC-
Confidence            4578899987665667777788899999987555  222333334678899999944444444333233  44445543 


Q ss_pred             CCCCCCCceeeeccCCCCeeEEEEecCCCcEEEEecCCCcEEEEeCCcccccccCCCCCcCCCCceeeeecCCCcceeeE
Q 021657          170 TSNGVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKVVDF  249 (309)
Q Consensus       170 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~  249 (309)
                           ..........-...+.|++.+.+..|+.+-...+.|...++......             .+  ..+-.. ..+|
T Consensus       156 -----~~~~~i~~~~~~~P~glaiD~~~~~lYw~d~~~~~I~~~~~~g~~~~-------------~v--~~~~~~-P~~l  214 (263)
T d1npea_         156 -----TNRRILAQDNLGLPNGLTFDAFSSQLCWVDAGTHRAECLNPAQPGRR-------------KV--LEGLQY-PFAV  214 (263)
T ss_dssp             -----CCCEEEECTTCSCEEEEEEETTTTEEEEEETTTTEEEEEETTEEEEE-------------EE--EECCCS-EEEE
T ss_pred             -----CCceeeeeecccccceEEEeecCcEEEEEeCCCCEEEEEECCCCCeE-------------EE--ECCCCC-cEEE
Confidence                 22222222233567899999988888777777889999988762211             11  122222 3567


Q ss_pred             EEccCCCeEEEEecCCCCCCCCCCeEEEEEcc
Q 021657          250 HWNASDPWTVVSVSDDCDSTGGGGTLQIWRMS  281 (309)
Q Consensus       250 ~~~~~~~~~~~s~s~d~~s~~~dg~v~vw~~~  281 (309)
                      ++.  +.+++.+-...       +.|...|..
T Consensus       215 av~--~~~lYwtd~~~-------~~I~~~~~~  237 (263)
T d1npea_         215 TSY--GKNLYYTDWKT-------NSVIAMDLA  237 (263)
T ss_dssp             EEE--TTEEEEEETTT-------TEEEEEETT
T ss_pred             EEE--CCEEEEEECCC-------CEEEEEECC
Confidence            765  56677654333       677777776

>d1fwxa2 b.69.3.1 (A:8-451) Nitrous oxide reductase, N-terminal domain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nitrous oxide reductase, N-terminal domain
family: Nitrous oxide reductase, N-terminal domain
domain: Nitrous oxide reductase, N-terminal domain
species: Paracoccus denitrificans [TaxId: 266]

Probab=98.00  E-value=0.00032  Score=54.29  Aligned_cols=172  Identities=10%  Similarity=0.065  Sum_probs=97.5

Q ss_pred             EEEEe---cCCCcEEEEEcCCCeEEEEEcCCCCcceEEEeeccCCceeEEEeccC-CCCeEEEEcCCC------------
Q 021657           96 DVTFC---PSSAQEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPL-DDNLILTGSADN------------  159 (309)
Q Consensus        96 ~~~~~---~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~-~~~~l~~~~~dg------------  159 (309)
                      .+.+.   +||+.+|+.-..+++|.+.|+.+.+...+... .....+..++..+. +..+++.++.+.            
T Consensus        89 ~~S~TdGtyDGrylFVNDkan~RVAvIdl~~fkt~kIi~i-Pn~~~~HG~r~~~~p~T~YV~~~~e~~vP~pndg~~l~d  167 (459)
T d1fwxa2          89 HMSFTEGKYDGRFLFMNDKANTRVARVRCDVMKCDAILEI-PNAKGIHGLRPQKWPRSNYVFCNGEDETPLVNDGTNMED  167 (459)
T ss_dssp             EEEEETTEEEEEEEEEEETTTTEEEEEETTTTEEEEEEEC-SSCCSEEEEEECCSSBCSEEEEEECSCEESSCSSSSTTC
T ss_pred             cccccCCccceeEEEEEcCCCceEEEEECcceeeeEEEec-CCCCCCceeecccCCCeEEEEccCccccccCCCCccccc
Confidence            45554   37755666677899999999998883223333 33455676666431 445666665532            


Q ss_pred             ------cEEEEecCCCCCCCCCCceeeeccCCCCeeEEEEecCCCcEEEEecCCC--------------cEEEEeCCccc
Q 021657          160 ------SVRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAEDG--------------LLNIWDYEKVG  219 (309)
Q Consensus       160 ------~i~i~d~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~dg--------------~i~iwd~~~~~  219 (309)
                            .+.++|..+      .+...+... .+....++++++|+++++++....              .+.+++.....
T Consensus       168 ~~~y~~~~t~ID~~t------m~V~~QV~V-~g~ld~~~~s~dGK~af~TsyNSE~g~~l~e~ta~e~D~i~V~n~~rie  240 (459)
T d1fwxa2         168 VANYVNVFTAVDADK------WEVAWQVLV-SGNLDNCDADYEGKWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEIE  240 (459)
T ss_dssp             GG-EEEEEEEEETTT------TEEEEEEEE-SSCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHHHH
T ss_pred             hhhcceEEEEEecCC------ceEEEEeee-CCChhccccCCCCCEEEEEeccccCCcchhhcccccceEEEEechHHhH
Confidence                  256788887      555555543 345678899999999886653211              23444432211


Q ss_pred             ccccCCCCCc----------CCCCceeeeecCCCcceeeEEEccCCCeEEEEecCCCCCCCCCCeEEEEEccc
Q 021657          220 KKVEQGPRTT----------NYPAGLFFQHAGHRDKVVDFHWNASDPWTVVSVSDDCDSTGGGGTLQIWRMSD  282 (309)
Q Consensus       220 ~~~~~~~~~~----------~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~s~d~~s~~~dg~v~vw~~~~  282 (309)
                      +.........          ......+..+..-......+..+|||.++++++..+       .++.|+|++.
T Consensus       241 ~av~~Gk~~eingV~VVD~~~~~~~~v~~yIPVpKsPHGV~vSPDGKyi~VaGKLs-------~tVSViD~~K  306 (459)
T d1fwxa2         241 KAIAAGDYQELNGVKVVDGRKEASSLFTRYIPIANNPHGCNMAPDKKHLCVAGKLS-------PTVTVLDVTR  306 (459)
T ss_dssp             HHHHHTCSEEETTEEEEECSGG--CSSEEEEEEESSCCCEEECTTSSEEEEECTTS-------SBEEEEEGGG
T ss_pred             HhhhcCCcEEeCCceeecccccCCcceeEEEecCCCCCceEECCCCCEEEEeCCcC-------CcEEEEEehh
Confidence            0000000000          000001111111112356789999999999855555       9999999984

>d1k32a2 b.68.7.1 (A:39-319) Tricorn protease N-terminal domain {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Tricorn protease N-terminal domain
family: Tricorn protease N-terminal domain
domain: Tricorn protease N-terminal domain
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=98.00  E-value=0.00013  Score=54.12  Aligned_cols=24  Identities=4%  Similarity=-0.043  Sum_probs=18.4

Q ss_pred             ccCCCCCcceEEEEECCCCCEEEEe
Q 021657            3 ILTGHQDNAEFALAMCPTEPYVLSG   27 (309)
Q Consensus         3 ~l~~H~~~~V~~~~~~~~~~~l~t~   27 (309)
                      .|..+.+ .+...+|||||+.||-.
T Consensus        35 ~Lt~~~~-~~~~p~~SPDG~~iaf~   58 (281)
T d1k32a2          35 KIVSNLG-VINNARFFPDGRKIAIR   58 (281)
T ss_dssp             EEECSSS-EEEEEEECTTSSEEEEE
T ss_pred             EEecCCC-cccCEEECCCCCEEEEE
Confidence            4555666 67899999999998844

>d1ijqa1 b.68.5.1 (A:377-642) Low density lipoprotein (LDL) receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: YWTD domain
family: YWTD domain
domain: Low density lipoprotein (LDL) receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.80  E-value=0.0029  Score=46.35  Aligned_cols=159  Identities=3%  Similarity=-0.089  Sum_probs=100.7

Q ss_pred             CCeEEEEEecCCCcEEEEEcCCCeEEEEEcCCCCcceEEEeeccCCceeEEEeccCCCCeEEEEc-CCCcEEEEecCCCC
Q 021657           92 DTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGS-ADNSVRMFDRRNLT  170 (309)
Q Consensus        92 ~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~-~dg~i~i~d~~~~~  170 (309)
                      ..+..+++.+.++++..+-...+.|.+.++....  ..............++++|..+.++.+-. ..+.|.-.++..  
T Consensus        77 ~~p~glAvD~~~~~lY~~d~~~~~I~v~~~~g~~--~~~~~~~~~~~P~~l~vd~~~g~ly~~~~~~~~~I~r~~~dG--  152 (266)
T d1ijqa1          77 QAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGVK--RKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNG--  152 (266)
T ss_dssp             SCCCEEEEETTTTEEEEEETTTTEEEEEETTSSS--EEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTS--
T ss_pred             CCcceEEEeeccceEEEEecCCCEEEeEecCCce--EEEEEcCCCCCcceEEEEcccCeEEEeccCCCcceeEeccCC--
Confidence            4567889987776777777788899999987555  33444445567889999994444444432 334566666653  


Q ss_pred             CCCCCCceeeec-cCCCCeeEEEEecCCCcEEEEecCCCcEEEEeCCcccccccCCCCCcCCCCceeeeecCCCcceeeE
Q 021657          171 SNGVGSPINKFE-GHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKVVDF  249 (309)
Q Consensus       171 ~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~l~~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~  249 (309)
                           .....+. ..-...+.+++.+.+..|+.+-...+.|...++.....             ..+...........++
T Consensus       153 -----s~~~~l~~~~~~~p~gl~iD~~~~~lYw~d~~~~~I~~~~~dG~~~-------------~~~~~~~~~~~~p~~l  214 (266)
T d1ijqa1         153 -----VDIYSLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNR-------------KTILEDEKRLAHPFSL  214 (266)
T ss_dssp             -----CCEEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSC-------------EEEEECTTTTSSEEEE
T ss_pred             -----CceecccccccceeeEEEeeccccEEEEecCCcCEEEEEECCCCCE-------------EEEEeCCCcccccEEE
Confidence                 3333332 23356789999998888888877788999888865221             1122222222344566


Q ss_pred             EEccCCCeEEEEecCCCCCCCCCCeEEEEEcc
Q 021657          250 HWNASDPWTVVSVSDDCDSTGGGGTLQIWRMS  281 (309)
Q Consensus       250 ~~~~~~~~~~~s~s~d~~s~~~dg~v~vw~~~  281 (309)
                      ++.  +.+++.+-..+       +.|...+..
T Consensus       215 av~--~~~ly~td~~~-------~~I~~~~~~  237 (266)
T d1ijqa1         215 AVF--EDKVFWTDIIN-------EAIFSANRL  237 (266)
T ss_dssp             EEE--TTEEEEEETTT-------TEEEEEETT
T ss_pred             EEE--CCEEEEEECCC-------CeEEEEECC
Confidence            666  45677654443       677666655

>d1fwxa2 b.69.3.1 (A:8-451) Nitrous oxide reductase, N-terminal domain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nitrous oxide reductase, N-terminal domain
family: Nitrous oxide reductase, N-terminal domain
domain: Nitrous oxide reductase, N-terminal domain
species: Paracoccus denitrificans [TaxId: 266]

Probab=97.74  E-value=0.0036  Score=48.42  Aligned_cols=82  Identities=9%  Similarity=0.076  Sum_probs=51.9

Q ss_pred             eeEEEEecCCCcEEEEecCCCcEEEEeCCcccccccCCCCCcCCCCceeeeecCCCcceeeEEEccCCCeEEEEecCCCC
Q 021657          188 VLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKVVDFHWNASDPWTVVSVSDDCD  267 (309)
Q Consensus       188 v~~~~~~~~~~~l~~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~s~d~~  267 (309)
                      ...+.++|||+++++++..+.++.|+|+++.........    .+...+.......-.-..-+|+..+ ....|.     
T Consensus       277 PHGV~vSPDGKyi~VaGKLs~tVSViD~~Ki~~~~~~~~----~~~~~~~~e~elglgPLht~fd~~g-~aytsl-----  346 (459)
T d1fwxa2         277 PHGCNMAPDKKHLCVAGKLSPTVTVLDVTRFDAVFYENA----DPRSAVVAEPELGLGPLHTAFDGRG-NAYTSL-----  346 (459)
T ss_dssp             CCCEEECTTSSEEEEECTTSSBEEEEEGGGHHHHHHSCC-----GGGGEEECCBCCSCEEEEEECTTS-EEEEEE-----
T ss_pred             CCceEECCCCCEEEEeCCcCCcEEEEEehhhhhhhcccC----CccccEEeecccCcCccccccCCCc-eEEEEe-----
Confidence            457899999999999999999999999987444321110    0011122222223334556777755 444433     


Q ss_pred             CCCCCCeEEEEEcc
Q 021657          268 STGGGGTLQIWRMS  281 (309)
Q Consensus       268 s~~~dg~v~vw~~~  281 (309)
                        -.|..|.-|++.
T Consensus       347 --fids~v~kw~~~  358 (459)
T d1fwxa2         347 --FLDSQVVKWNIE  358 (459)
T ss_dssp             --TTTTEEEEEEHH
T ss_pred             --eccceEEEEecc
Confidence              345999999997

>d1k32a2 b.68.7.1 (A:39-319) Tricorn protease N-terminal domain {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Tricorn protease N-terminal domain
family: Tricorn protease N-terminal domain
domain: Tricorn protease N-terminal domain
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=97.52  E-value=0.0015  Score=48.11  Aligned_cols=119  Identities=13%  Similarity=0.053  Sum_probs=68.7

Q ss_pred             EeccCC--CCeEEEEcCCCcEEEEecCCCCCCCCCCceeeeccCCCCeeEEEEecCCCcEEEEecCCC-----cEEEEeC
Q 021657          143 DWNPLD--DNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAEDG-----LLNIWDY  215 (309)
Q Consensus       143 ~~~~~~--~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~dg-----~i~iwd~  215 (309)
                      ..+| +  |+.++-.+ +|.|.+.|+..      ++. +.+..+.......+|||||++|+.+...++     .|.+++.
T Consensus         5 ~~sP-di~G~~v~f~~-~~dl~~~d~~~------g~~-~~Lt~~~~~~~~p~~SPDG~~iaf~~~~~~~~~~~~i~~~~~   75 (281)
T d1k32a2           5 LLNP-DIHGDRIIFVC-CDDLWEHDLKS------GST-RKIVSNLGVINNARFFPDGRKIAIRVMRGSSLNTADLYFYNG   75 (281)
T ss_dssp             CEEE-EEETTEEEEEE-TTEEEEEETTT------CCE-EEEECSSSEEEEEEECTTSSEEEEEEEESTTCCEEEEEEEET
T ss_pred             ccCC-CCCCCEEEEEe-CCcEEEEECCC------CCE-EEEecCCCcccCEEECCCCCEEEEEEeeCCCCCceEEEEEEe
Confidence            4567 6  77776653 56788889986      544 456666777889999999998655543332     3555555


Q ss_pred             CcccccccCCCCCcCCCCceeeeecCCCcceeeEEEccCCCeEEEEecCCCCCCCCCCeEEEEEcc
Q 021657          216 EKVGKKVEQGPRTTNYPAGLFFQHAGHRDKVVDFHWNASDPWTVVSVSDDCDSTGGGGTLQIWRMS  281 (309)
Q Consensus       216 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~s~d~~s~~~dg~v~vw~~~  281 (309)
                      ...... ...        ..-..............|+|++..++.+...+  .......+...+..
T Consensus        76 ~~g~~~-~lt--------~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~--~~~~~~~~~~~~~~  130 (281)
T d1k32a2          76 ENGEIK-RIT--------YFSGKSTGRRMFTDVAGFDPDGNLIISTDAMQ--PFSSMTCLYRVEND  130 (281)
T ss_dssp             TTTEEE-ECC--------CCCEEEETTEECSEEEEECTTCCEEEEECTTS--SSTTCCEEEEEEGG
T ss_pred             cCCceE-Eee--------ecCCCccCccccccccccCCCCCEEEEEEccC--CCccceeeeeecCC
Confidence            541111 100        00001111223456788999999877765543  33333445555544

>d1ijqa1 b.68.5.1 (A:377-642) Low density lipoprotein (LDL) receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: YWTD domain
family: YWTD domain
domain: Low density lipoprotein (LDL) receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.24  E-value=0.018  Score=41.92  Aligned_cols=163  Identities=9%  Similarity=-0.064  Sum_probs=99.8

Q ss_pred             cCCeEEEEEecCCCcEEEEEcCCCeEEEEEcCCCC--cceEEEeeccCCceeEEEeccCCCCeEEEEcCCCcEEEEecCC
Q 021657           91 EDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGT--SPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRN  168 (309)
Q Consensus        91 ~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~--~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~  168 (309)
                      ...+..+.|++..+.++.+-...+.|.-.++....  .............+..+++.+..+++..+-...+.|.+.++..
T Consensus        29 ~~~~~~id~d~~~~~lYw~D~~~~~I~~~~l~~~~~~~~~~~~~~~~~~~p~glAvD~~~~~lY~~d~~~~~I~v~~~~g  108 (266)
T d1ijqa1          29 LRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKG  108 (266)
T ss_dssp             CSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTS
T ss_pred             CCceEEEEEEeCCCEEEEEECCCCEEEEEEecCCCCCcceEEEEeCCCCCcceEEEeeccceEEEEecCCCEEEeEecCC
Confidence            34567899998775666666677778777664322  1122223333455778898874566666666778999999886


Q ss_pred             CCCCCCCCceeeeccCCCCeeEEEEecCCCcEEEEec-CCCcEEEEeCCcccccccCCCCCcCCCCceeeeecCCCccee
Q 021657          169 LTSNGVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSA-EDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKVV  247 (309)
Q Consensus       169 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~  247 (309)
                            ................++++|...+++.+.. ..+.|.-.++.....             ..+  ....-....
T Consensus       109 ------~~~~~~~~~~~~~P~~l~vd~~~g~ly~~~~~~~~~I~r~~~dGs~~-------------~~l--~~~~~~~p~  167 (266)
T d1ijqa1         109 ------VKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDI-------------YSL--VTENIQWPN  167 (266)
T ss_dssp             ------SSEEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCCE-------------EEE--ECSSCSCEE
T ss_pred             ------ceEEEEEcCCCCCcceEEEEcccCeEEEeccCCCcceeEeccCCCce-------------ecc--cccccceee
Confidence                  4433444444566889999998777776643 334565555544111             111  112234567


Q ss_pred             eEEEccCCCeEEEEecCCCCCCCCCCeEEEEEcc
Q 021657          248 DFHWNASDPWTVVSVSDDCDSTGGGGTLQIWRMS  281 (309)
Q Consensus       248 ~~~~~~~~~~~~~s~s~d~~s~~~dg~v~vw~~~  281 (309)
                      ++++++.+..++.+-+..       +.|...++.
T Consensus       168 gl~iD~~~~~lYw~d~~~-------~~I~~~~~d  194 (266)
T d1ijqa1         168 GITLDLLSGRLYWVDSKL-------HSISSIDVN  194 (266)
T ss_dssp             EEEEETTTTEEEEEETTT-------TEEEEEETT
T ss_pred             EEEeeccccEEEEecCCc-------CEEEEEECC
Confidence            888888777777654443       677777765

>d1v04a_ b.68.6.2 (A:) Serum paraoxonase/arylesterase 1, PON1 {Rabit (Oryctolagus cuniculus) [TaxId: 9986]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: Serum paraoxonase/arylesterase 1, PON1
domain: Serum paraoxonase/arylesterase 1, PON1
species: Rabit (Oryctolagus cuniculus) [TaxId: 9986]

Probab=96.92  E-value=0.049  Score=41.15  Aligned_cols=111  Identities=6%  Similarity=-0.019  Sum_probs=66.2

Q ss_pred             ecCCCcEEEEEc---CCCeEEEEEcCCCCcceEE--Eee-ccCCceeEEEeccCCCCeEEEEcC---------------C
Q 021657          100 CPSSAQEFCSVG---DDSCLILWDARVGTSPVIK--VEK-AHDADLHCVDWNPLDDNLILTGSA---------------D  158 (309)
Q Consensus       100 ~~~~~~~l~s~~---~dg~i~iwd~~~~~~~~~~--~~~-~~~~~v~~~~~~~~~~~~l~~~~~---------------d  158 (309)
                      .+++..+|++..   ...+|.++++.........  ... ......+.+.+.. ++.++++-..               -
T Consensus       107 ~~dg~~~L~vvnH~~~~~~ieif~~~~~~~~l~~~~~v~~~~~~~pNDv~~~~-~g~fy~Tnd~~~~~~~~~~~e~~~~~  185 (340)
T d1v04a_         107 DDDNTVYLLVVNHPGSSSTVEVFKFQEEEKSLLHLKTIRHKLLPSVNDIVAVG-PEHFYATNDHYFIDPYLKSWEMHLGL  185 (340)
T ss_dssp             CTTCCEEEEEEECSTTCCEEEEEEEETTTTEEEEEEEECCTTCSSEEEEEEEE-TTEEEEEESCSCCSHHHHHHHHHTTC
T ss_pred             cCCCcEEEEEEeccCCCceeEEEEEeCCCCeEEEEeecCCccccCccceEEec-CCCEEEecCccCcChhhhhhhHhhcC
Confidence            345544555543   4567888888655432211  111 1123467888877 7777777311               0


Q ss_pred             CcEEEEecCCCCCCCCCCceeeeccCCCCeeEEEEecCCCcEEEEecCCCcEEEEeCCcc
Q 021657          159 NSVRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKV  218 (309)
Q Consensus       159 g~i~i~d~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~dg~i~iwd~~~~  218 (309)
                      +...+|....      .. .......-...+.|+++||+++++++-+..+.|++|++...
T Consensus       186 ~~g~v~~~~~------~~-~~~~~~~l~~pNGI~~s~d~~~lyVa~t~~~~i~~y~~~~~  238 (340)
T d1v04a_         186 AWSFVTYYSP------ND-VRVVAEGFDFANGINISPDGKYVYIAELLAHKIHVYEKHAN  238 (340)
T ss_dssp             CCEEEEEECS------SC-EEEEEEEESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTT
T ss_pred             CceeEEEEcC------Cc-eEEEcCCCCccceeEECCCCCEEEEEeCCCCeEEEEEeCCC
Confidence            1233333332      22 22222223467899999999999989999999999999763

>d1qfma1 b.69.7.1 (A:1-430) Prolyl oligopeptidase, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Peptidase/esterase 'gauge' domain
family: Prolyl oligopeptidase, N-terminal domain
domain: Prolyl oligopeptidase, N-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=96.76  E-value=0.082  Score=41.40  Aligned_cols=116  Identities=10%  Similarity=0.033  Sum_probs=66.5

Q ss_pred             ceEEEEECCCCCEEEE-ec----CCCcEEEEeCCccccccccCCccccccCCCCceeecCCCCCCCCcccCCCCCcCccc
Q 021657           11 AEFALAMCPTEPYVLS-GG----KDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRG   85 (309)
Q Consensus        11 ~V~~~~~~~~~~~l~t-~~----~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   85 (309)
                      .+..+++||+++++|- -+    .-..|++.|+.++.....                                       
T Consensus       126 ~~~~~~~Spd~~~la~s~d~~G~e~~~l~v~Dl~tg~~~~~---------------------------------------  166 (430)
T d1qfma1         126 ALRGYAFSEDGEYFAYGLSASGSDWVTIKFMKVDGAKELPD---------------------------------------  166 (430)
T ss_dssp             EEEEEEECTTSSEEEEEEEETTCSCEEEEEEETTTTEEEEE---------------------------------------
T ss_pred             eecceEecCCCCEEEEEeccccCchheeEEeccCcceeccc---------------------------------------
Confidence            4567789999999873 22    234689999986532110                                       


Q ss_pred             ccccccCCeEEEEEecCCCcEEEEEcC---------------CCeEEEEEcCCCCcceEEEeeccCC--ceeEEEeccCC
Q 021657           86 IYNGHEDTVEDVTFCPSSAQEFCSVGD---------------DSCLILWDARVGTSPVIKVEKAHDA--DLHCVDWNPLD  148 (309)
Q Consensus        86 ~~~~~~~~v~~~~~~~~~~~~l~s~~~---------------dg~i~iwd~~~~~~~~~~~~~~~~~--~v~~~~~~~~~  148 (309)
                      .+.  ......+.|.+++..++.+.-.               ...|..+.+.+........+.....  .+..+..++ +
T Consensus       167 ~i~--~~~~~~~~W~~D~~~~~Y~~~~~~~~~~~~~~~~~~~~~~v~~h~lgt~~~~d~~v~~e~d~~~~~~~~~~s~-d  243 (430)
T d1qfma1         167 VLE--RVKFSCMAWTHDGKGMFYNAYPQQDGKSDGTETSTNLHQKLYYHVLGTDQSEDILCAEFPDEPKWMGGAELSD-D  243 (430)
T ss_dssp             EEE--EECSCCEEECTTSSEEEEEECCCCSSCCSSSCCCCCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECT-T
T ss_pred             ccc--cccccceEEcCCCCEEEEEEeccccCcccccccccCCcceEEEEECCCCccccccccccccCCceEEeeeccC-C
Confidence            111  1112467899998555555421               2368888887765444444444333  355667788 8


Q ss_pred             CCeEEEEcC---CCc--EEEEecCC
Q 021657          149 DNLILTGSA---DNS--VRMFDRRN  168 (309)
Q Consensus       149 ~~~l~~~~~---dg~--i~i~d~~~  168 (309)
                      +++++....   ++.  +.+.|+..
T Consensus       244 ~~~l~i~~~~~~~~~~~~~~~d~~~  268 (430)
T d1qfma1         244 GRYVLLSIREGCDPVNRLWYCDLQQ  268 (430)
T ss_dssp             SCEEEEEEECSSSSCCEEEEEEGGG
T ss_pred             cceeeEEeeccCCccEEEEEeeCCC
Confidence            887664322   333  44455554

>d1k3ia3 b.69.1.1 (A:151-537) Galactose oxidase, central domain {Fungi (Fusarium sp.) [TaxId: 29916]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Galactose oxidase, central domain
family: Galactose oxidase, central domain
domain: Galactose oxidase, central domain
species: Fungi (Fusarium sp.) [TaxId: 29916]

Probab=96.45  E-value=0.12  Score=39.48  Aligned_cols=111  Identities=13%  Similarity=0.100  Sum_probs=68.5

Q ss_pred             EecCCCcEEEEEcCC-----C------eEEEEEcCCCCcceEEEe-eccCCceeEEEeccCCCCeEEEEcCC-CcEEEEe
Q 021657           99 FCPSSAQEFCSVGDD-----S------CLILWDARVGTSPVIKVE-KAHDADLHCVDWNPLDDNLILTGSAD-NSVRMFD  165 (309)
Q Consensus        99 ~~~~~~~~l~s~~~d-----g------~i~iwd~~~~~~~~~~~~-~~~~~~v~~~~~~~~~~~~l~~~~~d-g~i~i~d  165 (309)
                      ...+| ++++.|+.+     +      .+.+||..+++....... ..+.......++.+ ++.+++.|+.+ ..+.+||
T Consensus        27 ~~~~g-kv~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w~~~~~~~~~~~~~~~~~~~~~-~g~i~v~Gg~~~~~~~~yd  104 (387)
T d1k3ia3          27 EPTSG-RVLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSDRTVTVTKHDMFCPGISMDG-NGQIVVTGGNDAKKTSLYD  104 (387)
T ss_dssp             ETTTT-EEEEEEECCCTTTCSCCCSEEEEEEECTTTCCBCCCEEEECSCCCSSCEEEECT-TSCEEEECSSSTTCEEEEE
T ss_pred             EeeCC-EEEEEEeecCcccCCCCCceeEEEEEECCCCcEeecCCCCCCcccceeEEEEec-CCcEEEeecCCCcceeEec
Confidence            33455 777777642     1      367999998875433222 23333445667888 89999988765 5899999


Q ss_pred             cCCCCCCCCCCceeeeccCCCCeeEEEEecCCCcEEEEecCC------CcEEEEeCCc
Q 021657          166 RRNLTSNGVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAED------GLLNIWDYEK  217 (309)
Q Consensus       166 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~d------g~i~iwd~~~  217 (309)
                      ..+..    ......+... ..-...+..+||+. ++.|+.+      ..+.+||..+
T Consensus       105 ~~~~~----w~~~~~~~~~-r~~~~~~~~~dG~v-~v~GG~~~~~~~~~~v~~yd~~~  156 (387)
T d1k3ia3         105 SSSDS----WIPGPDMQVA-RGYQSSATMSDGRV-FTIGGSWSGGVFEKNGEVYSPSS  156 (387)
T ss_dssp             GGGTE----EEECCCCSSC-CSSCEEEECTTSCE-EEECCCCCSSSCCCCEEEEETTT
T ss_pred             CccCc----cccccccccc-ccccceeeecCCce-eeeccccccccccceeeeecCCC
Confidence            98732    2222222221 22345677888884 5566542      3588999876

>d1utca2 b.69.6.1 (A:4-330) Clathrin heavy-chain terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Clathrin heavy-chain terminal domain
family: Clathrin heavy-chain terminal domain
domain: Clathrin heavy-chain terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=95.89  E-value=0.19  Score=36.64  Aligned_cols=187  Identities=12%  Similarity=0.172  Sum_probs=103.1

Q ss_pred             CcccCCCCCcCcccccccccCCeEEEEEecCCCcEEEEEcCCCeEEEEEcCCCCcceEEEeeccC----CceeEEEeccC
Q 021657           72 NDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPVIKVEKAHD----ADLHCVDWNPL  147 (309)
Q Consensus        72 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~----~~v~~~~~~~~  147 (309)
                      .+.++++++.+.++.+.- ..+|.--.|-.+.  .|+-.+ +..|+-|+++... .+.+.+..|.    ..|.....++ 
T Consensus        84 ~LQiFnletK~klks~~~-~e~VvfWkWis~~--~L~lVT-~taVYHW~~~g~s-~P~k~fdR~~~L~~~QIInY~~d~-  157 (327)
T d1utca2          84 TLQIFNIEMKSKMKAHTM-TDDVTFWKWISLN--TVALVT-DNAVYHWSMEGES-QPVKMFDRHSSLAGCQIINYRTDA-  157 (327)
T ss_dssp             EEEEEETTTTEEEEEEEC-SSCCCEEEESSSS--EEEEEC-SSEEEEEESSSSC-CCEEEEECCGGGTTCEEEEEEECT-
T ss_pred             eEEEEehhHhhhhceEEc-CCCcEEEEecCCC--EEEEEc-CCceEEEcccCCC-CchhhhhhcccccCceEEEEEECC-
Confidence            344444445544444432 3467667776654  454443 3579999996544 3455555554    4677778888 


Q ss_pred             CCCeEEEEc-------CCCcEEEEecCCCCCCCCCCceeeeccCCCCeeEEEEec--CCCcEEEEe---cCCCcEEEEeC
Q 021657          148 DDNLILTGS-------ADNSVRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWSP--DKSSVFGSS---AEDGLLNIWDY  215 (309)
Q Consensus       148 ~~~~l~~~~-------~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~~~l~~~~---~~dg~i~iwd~  215 (309)
                      +.++++..+       -.|.+.+|..+.       +.-+.+++|......+.+..  +...+|+-+   ...+.++|-++
T Consensus       158 ~~kW~~l~GI~~~~~~i~G~mQLYS~er-------~~sQ~ieGhaa~F~~~~~~g~~~~~~lf~fa~r~~~~~kLhIiEi  230 (327)
T d1utca2         158 KQKWLLLTGISAQQNRVVGAMQLYSVDR-------KVSQPIEGHAASFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEV  230 (327)
T ss_dssp             TSCEEEEEEEEEETTEEEEEEEEEETTT-------TEEEEECCSEEEEEEECCTTCSSCEEEEEEEEEETTEEEEEEEEC
T ss_pred             CCCEEEEEeEecCCCceeEEEEEEEecc-------CcCccccceeeeeEEEEcCCCCCCceEEEEEECCCCCcEEEEEEc
Confidence            777766543       236778898874       55666777755444433321  112234333   23367889888


Q ss_pred             CcccccccCCCCCcCCCCceeeeecCCCcceeeEEEccCCCeEEEEecCCCCCCCCCCeEEEEEccc
Q 021657          216 EKVGKKVEQGPRTTNYPAGLFFQHAGHRDKVVDFHWNASDPWTVVSVSDDCDSTGGGGTLQIWRMSD  282 (309)
Q Consensus       216 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~s~d~~s~~~dg~v~vw~~~~  282 (309)
                      ..........++..   ....+.-....+-..++..++..+.+++....        |.|++||+..
T Consensus       231 g~~~~g~~~f~kk~---vdi~fppea~~DFPvamqvs~kygiiyviTK~--------G~i~lyDleT  286 (327)
T d1utca2         231 GTPPTGNQPFPKKA---VDVFFPPEAQNDFPVAMQISEKHDVVFLITKY--------GYIHLYDLET  286 (327)
T ss_dssp             SCCCTTCCCCCCEE---EECCCCTTCTTCCEEEEEEETTTTEEEEEETT--------SEEEEEETTT
T ss_pred             CCCccCCCCCccee---EEEECCccccCCcEEEEEeeccCCEEEEEecC--------cEEEEEEccc
Confidence            76322111111100   00111112234455678888877766654433        8999999993

>d2ad6a1 b.70.1.1 (A:1-571) Methanol dehydrogenase, heavy chain {Methylophilus methylotrophus, w3a1 [TaxId: 17]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Methanol dehydrogenase, heavy chain
species: Methylophilus methylotrophus, w3a1 [TaxId: 17]

Probab=95.79  E-value=0.14  Score=41.70  Aligned_cols=80  Identities=14%  Similarity=0.143  Sum_probs=50.4

Q ss_pred             CeEEEEEcCCCCcceEEEeeccCCceeEEEeccCCCCeEEEEcCCCcEEEEecCCCCCCCCCCceeeeccCCC-CeeEEE
Q 021657          114 SCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGHSA-AVLCVQ  192 (309)
Q Consensus       114 g~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~-~v~~~~  192 (309)
                      |.|.-+|+.+++.  .-.. ....+..+=...- .+.++++|+.||.++-+|.++      ++.+.+++.... .-.-+.
T Consensus       444 G~l~AiD~~TG~~--~W~~-~~~~~~~~g~l~T-agglVf~G~~dg~l~A~Da~t------Ge~lW~~~l~~~~~a~P~t  513 (571)
T d2ad6a1         444 GQIRAFDLTTGKA--KWTK-WEKFAAWGGTLYT-KGGLVWYATLDGYLKALDNKD------GKELWNFKMPSGGIGSPMT  513 (571)
T ss_dssp             EEEEEECTTTCCE--EEEE-EESSCCCSBCEEE-TTTEEEEECTTSEEEEEETTT------CCEEEEEECSSCCCSCCEE
T ss_pred             ccEEEeccCCCce--eeEc-CCCCCCCcceeEe-cCCEEEEECCCCeEEEEECCC------CcEEEEEECCCCceecceE
Confidence            5788888888882  2222 1122221111122 467788899999999999999      999988864322 122366


Q ss_pred             EecCCCcEEEE
Q 021657          193 WSPDKSSVFGS  203 (309)
Q Consensus       193 ~~~~~~~l~~~  203 (309)
                      |..+|+..+++
T Consensus       514 y~~dGkqYi~v  524 (571)
T d2ad6a1         514 YSFKGKQYIGS  524 (571)
T ss_dssp             EEETTEEEEEE
T ss_pred             EEECCEEEEEE
Confidence            77788765544

>d1kb0a2 b.70.1.1 (A:1-573) Quinoprotein alcohol dehydrogenase, N-terminal domain {Comamonas testosteroni [TaxId: 285]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Quinoprotein alcohol dehydrogenase, N-terminal domain
species: Comamonas testosteroni [TaxId: 285]

Probab=95.67  E-value=0.23  Score=40.45  Aligned_cols=80  Identities=14%  Similarity=0.198  Sum_probs=49.3

Q ss_pred             CeEEEEEcCCCCcceEEEeeccCCceeEEEeccCCCCeEEEEcCCCcEEEEecCCCCCCCCCCceeeeccCCCCe-eEEE
Q 021657          114 SCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGHSAAV-LCVQ  192 (309)
Q Consensus       114 g~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~v-~~~~  192 (309)
                      |.|.-||+.+++  ..-... ...+...=...- .+.++++|+.||.++.+|.++      ++.+.+++...... .-+.
T Consensus       457 G~l~AiD~~tGk--~~W~~~-~~~p~~gg~lst-agglVF~G~~dg~l~A~Da~T------Ge~LW~~~~~~~~~~~P~t  526 (573)
T d1kb0a2         457 GRLLAWDPVAQK--AAWSVE-HVSPWNGGTLTT-AGNVVFQGTADGRLVAYHAAT------GEKLWEAPTGTGVVAAPST  526 (573)
T ss_dssp             EEEEEEETTTTE--EEEEEE-ESSSCCCCEEEE-TTTEEEEECTTSEEEEEETTT------CCEEEEEECSSCCCSCCEE
T ss_pred             ccEEEeCCCCCc--eEeeec-CCCCCCCceEEE-cCCEEEEECCCCeEEEEECCC------CcEeEEEECCCCccccCEE
Confidence            467778888777  222222 222221111222 577888899999999999999      99998887433211 1255


Q ss_pred             EecCCCcEEEE
Q 021657          193 WSPDKSSVFGS  203 (309)
Q Consensus       193 ~~~~~~~l~~~  203 (309)
                      |..+|+..++.
T Consensus       527 y~~~GkQYv~v  537 (573)
T d1kb0a2         527 YMVDGRQYVSV  537 (573)
T ss_dssp             EEETTEEEEEE
T ss_pred             EEECCEEEEEE
Confidence            66788754433

>d1utca2 b.69.6.1 (A:4-330) Clathrin heavy-chain terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Clathrin heavy-chain terminal domain
family: Clathrin heavy-chain terminal domain
domain: Clathrin heavy-chain terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=95.55  E-value=0.27  Score=35.87  Aligned_cols=151  Identities=15%  Similarity=0.303  Sum_probs=94.9

Q ss_pred             CCCeEEEEEcCCCCcceEEEeeccCCceeEEEeccCCCCeEEEEcCCCcEEEEecCCCCCCCCCCceeeeccCCCCeeEE
Q 021657          112 DDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGHSAAVLCV  191 (309)
Q Consensus       112 ~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~v~~~  191 (309)
                      ....|.|.|+.....+..+...+     .+.-.+| ..+.++.-+ ..++.+||+++      .+.+..+.- ..+|.--
T Consensus        43 ~~~~VvIidl~n~~~~~Rrpi~A-----dsAIMhP-~~~IiALra-g~~LQiFnlet------K~klks~~~-~e~VvfW  108 (327)
T d1utca2          43 EQAQVVIIDMNDPSNPIRRPISA-----DSAIMNP-ASKVIALKA-GKTLQIFNIEM------KSKMKAHTM-TDDVTFW  108 (327)
T ss_dssp             TEEEEEEEETTSTTSCEEEECCC-----SEEEECS-SSSEEEEEE-TTEEEEEETTT------TEEEEEEEC-SSCCCEE
T ss_pred             CCceEEEEECCCCCcceecccch-----hhhhcCC-CCcEEEEec-CCeEEEEehhH------hhhhceEEc-CCCcEEE
Confidence            34578899998776544444322     3445688 778887766 56899999999      777777764 4466666


Q ss_pred             EEecCCCcEEEEecCCCcEEEEeCCcccccccCCCCCcCCCCceeeeecC--CCcceeeEEEccCCCeEEEEe-cCCCCC
Q 021657          192 QWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAG--HRDKVVDFHWNASDPWTVVSV-SDDCDS  268 (309)
Q Consensus       192 ~~~~~~~~l~~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~v~~~~~~~~~~~~~~s~-s~d~~s  268 (309)
                      .|-.+..  |+.-+ +..|+-|++.....+.            .++....  ....|..-..+++..+++++| +.+  -
T Consensus       109 kWis~~~--L~lVT-~taVYHW~~~g~s~P~------------k~fdR~~~L~~~QIInY~~d~~~kW~~l~GI~~~--~  171 (327)
T d1utca2         109 KWISLNT--VALVT-DNAVYHWSMEGESQPV------------KMFDRHSSLAGCQIINYRTDAKQKWLLLTGISAQ--Q  171 (327)
T ss_dssp             EESSSSE--EEEEC-SSEEEEEESSSSCCCE------------EEEECCGGGTTCEEEEEEECTTSCEEEEEEEEEE--T
T ss_pred             EecCCCE--EEEEc-CCceEEEcccCCCCch------------hhhhhcccccCceEEEEEECCCCCEEEEEeEecC--C
Confidence            7776664  44444 5689999996532221            1221111  134677777888888877654 222  3


Q ss_pred             CCCCCeEEEEEccccccCChhhHhHhhhcccc
Q 021657          269 TGGGGTLQIWRMSDLIYRPQDEVLAELEKFKA  300 (309)
Q Consensus       269 ~~~dg~v~vw~~~~~~~~~~~~~~~~~~~h~~  300 (309)
                      ++..|.+.+|..+.       +.-+.+++|-+
T Consensus       172 ~~i~G~mQLYS~er-------~~sQ~ieGhaa  196 (327)
T d1utca2         172 NRVVGAMQLYSVDR-------KVSQPIEGHAA  196 (327)
T ss_dssp             TEEEEEEEEEETTT-------TEEEEECCSEE
T ss_pred             CceeEEEEEEEecc-------CcCccccceee
Confidence            34568999999982       33344566644

>d1flga_ b.70.1.1 (A:) Ethanol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Ethanol dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=95.55  E-value=0.45  Score=38.71  Aligned_cols=80  Identities=25%  Similarity=0.370  Sum_probs=52.4

Q ss_pred             CCeEEEEEcCCCCcceEEEeeccCCceeEEEeccCCCCeEEEEcCCCcEEEEecCCCCCCCCCCceeeeccCCCC-eeEE
Q 021657          113 DSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGHSAA-VLCV  191 (309)
Q Consensus       113 dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~-v~~~  191 (309)
                      .|.|.-+|+.+++  ..-.... ..++.+-..+- .+.++++|+.||.++-+|.++      ++.+.+++..... -.-+
T Consensus       465 ~G~l~AiD~~TG~--i~W~~~~-~~p~~~g~lst-agglVF~Gt~dg~l~A~Da~T------Ge~LW~~~~~~~~~~~P~  534 (582)
T d1flga_         465 VGSLRAMDPVSGK--VVWEHKE-HLPLWAGVLAT-AGNLVFTGTGDGYFKAFDAKS------GKELWKFQTGSGIVSPPI  534 (582)
T ss_dssp             SEEEEEECTTTCC--EEEEEEE-SSCCCSCCEEE-TTTEEEEECTTSEEEEEETTT------CCEEEEEECSSCCCSCCE
T ss_pred             CCeEEEEcCCCCc--EEeecCC-CCCCccceeEE-cCCeEEEeCCCCeEEEEECCC------CcEeEEEECCCCccccCE
Confidence            4678888998888  3333222 22232212233 567888899999999999999      9999988743221 1236


Q ss_pred             EEecCCCcEEE
Q 021657          192 QWSPDKSSVFG  202 (309)
Q Consensus       192 ~~~~~~~~l~~  202 (309)
                      .+..+|+..++
T Consensus       535 ty~~~G~qYv~  545 (582)
T d1flga_         535 TWEQDGEQYLG  545 (582)
T ss_dssp             EEEETTEEEEE
T ss_pred             EEEECCEEEEE
Confidence            77788865443

>d1h6la_ b.68.3.1 (A:) Thermostable phytase (3-phytase) {Bacillus amyloliquefaciens [TaxId: 1390]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Thermostable phytase (3-phytase)
family: Thermostable phytase (3-phytase)
domain: Thermostable phytase (3-phytase)
species: Bacillus amyloliquefaciens [TaxId: 1390]

Probab=94.92  E-value=0.51  Score=35.47  Aligned_cols=148  Identities=7%  Similarity=0.109  Sum_probs=83.7

Q ss_pred             eEEEEEcCCCCcceEEEeec-------cCCceeEEEe--ccCCCC-eEEEEcCCCcEEEEecCCCCC-CCCCCceeeecc
Q 021657          115 CLILWDARVGTSPVIKVEKA-------HDADLHCVDW--NPLDDN-LILTGSADNSVRMFDRRNLTS-NGVGSPINKFEG  183 (309)
Q Consensus       115 ~i~iwd~~~~~~~~~~~~~~-------~~~~v~~~~~--~~~~~~-~l~~~~~dg~i~i~d~~~~~~-~~~~~~~~~~~~  183 (309)
                      +|.+|.+..... ....+..       ....++.+|+  ++.++. ++++...+|.+..|.+..... ....+.++++. 
T Consensus       100 ~l~~~~id~~~~-~l~~~~~~~~p~~~~~~~vYGlc~y~~~~~g~~~afv~~k~G~v~q~~l~~~~~g~v~~~lvr~f~-  177 (353)
T d1h6la_         100 TIEIYAIDGKNG-TLQSITDPNRPIASAIDEVYGFSLYHSQKTGKYYAMVTGKEGEFEQYELNADKNGYISGKKVRAFK-  177 (353)
T ss_dssp             EEEEEEEETTTT-EEEECSCSSSCEECSSSSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSSEEEEEEEEEE-
T ss_pred             eEEEEEecCccc-ccccccccccccccccCcceEEEEEecCCCCeEEEEEEcCCceEEEEEEEcCCCCceeeEeeeccC-
Confidence            677887753321 2222211       1234777777  663454 566777789999887753211 00124555565 


Q ss_pred             CCCCeeEEEEecCCCcEEEEecCCCcEEEEeCCcccccccCCCCCcCCCCceeeeecC--CCcceeeEEEc--cC-CCeE
Q 021657          184 HSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAG--HRDKVVDFHWN--AS-DPWT  258 (309)
Q Consensus       184 ~~~~v~~~~~~~~~~~l~~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~v~~~~~~--~~-~~~~  258 (309)
                      ....+..+.+.+....|+ .+-++.-++.++.......          ....+....+  ....+-.|+.-  .+ ..+|
T Consensus       178 ~~~q~EGCVvDde~~~Ly-isEE~~Giw~~~a~~~~~~----------~~~~i~~~~g~~l~~D~EGlaiy~~~~~~Gyl  246 (353)
T d1h6la_         178 MNSQTEGMAADDEYGSLY-IAEEDEAIWKFSAEPDGGS----------NGTVIDRADGRHLTPDIEGLTIYYAADGKGYL  246 (353)
T ss_dssp             CSSCEEEEEEETTTTEEE-EEETTTEEEEEESSTTSCS----------CCEEEEECSSSSCCSCEEEEEEEECGGGCEEE
T ss_pred             CCCccceEEEeCCCCcEE-EecCccceEEEEeccCCCc----------cceeeecccCccccCCccccEEEEcCCCCeEE
Confidence            356788999999988776 6666666655555431111          1122222212  34566666653  33 3477


Q ss_pred             EEEecCCCCCCCCCCeEEEEEccc
Q 021657          259 VVSVSDDCDSTGGGGTLQIWRMSD  282 (309)
Q Consensus       259 ~~s~s~d~~s~~~dg~v~vw~~~~  282 (309)
                      ++|.-.+       ++..+||...
T Consensus       247 ivSsQG~-------n~f~vydr~~  263 (353)
T d1h6la_         247 LASSQGN-------SSYAIYERQG  263 (353)
T ss_dssp             EEEEGGG-------TEEEEEESST
T ss_pred             EEEcCCC-------CeEEEEecCC
Confidence            7755444       8999999874

>d1kv9a2 b.70.1.1 (A:1-560) Quinoprotein alcohol dehydrogenase, N-terminal domain {Pseudomonas putida, hk5 [TaxId: 303]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Quinoprotein alcohol dehydrogenase, N-terminal domain
species: Pseudomonas putida, hk5 [TaxId: 303]

Probab=94.88  E-value=0.5  Score=38.24  Aligned_cols=81  Identities=14%  Similarity=0.226  Sum_probs=51.3

Q ss_pred             CeEEEEEcCCCCcceEEEeeccCCceeEEEeccCCCCeEEEEcCCCcEEEEecCCCCCCCCCCceeeeccCCCC-eeEEE
Q 021657          114 SCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGHSAA-VLCVQ  192 (309)
Q Consensus       114 g~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~-v~~~~  192 (309)
                      |.|.-||+.+++.  .-.. ....+..+-.+.- .+.++++|+.||.++-+|.++      ++.+.+++..... -.-+.
T Consensus       438 G~l~A~D~~tGk~--~W~~-~~~~~~~gg~l~T-agglVF~G~~dg~l~A~Da~t------Ge~LW~~~l~~~~~~~P~t  507 (560)
T d1kv9a2         438 GALLAWDPVKQKA--AWKV-PYPTHWNGGTLST-AGNLVFQGTAAGQMHAYSADK------GEALWQFEAQSGIVAAPMT  507 (560)
T ss_dssp             EEEEEEETTTTEE--EEEE-EESSSCCCCEEEE-TTTEEEEECTTSEEEEEETTT------CCEEEEEECSSCCCSCCEE
T ss_pred             cceEEEeCCCCeE--eeec-cCCCCCCCceeEE-CCCEEEEECCCCcEEEEECCC------CcEeEEEECCCCccccCEE
Confidence            6788889988873  2222 2222222212222 567888899999999999999      9999888743321 12356


Q ss_pred             EecCCCcEEEEe
Q 021657          193 WSPDKSSVFGSS  204 (309)
Q Consensus       193 ~~~~~~~l~~~~  204 (309)
                      +..+|+..++..
T Consensus       508 y~~dGkqyv~v~  519 (560)
T d1kv9a2         508 FELAGRQYVAIM  519 (560)
T ss_dssp             EEETTEEEEEEE
T ss_pred             EEECCEEEEEEE
Confidence            667887544433

>d1v04a_ b.68.6.2 (A:) Serum paraoxonase/arylesterase 1, PON1 {Rabit (Oryctolagus cuniculus) [TaxId: 9986]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: Serum paraoxonase/arylesterase 1, PON1
domain: Serum paraoxonase/arylesterase 1, PON1
species: Rabit (Oryctolagus cuniculus) [TaxId: 9986]

Probab=94.84  E-value=0.53  Score=35.28  Aligned_cols=161  Identities=12%  Similarity=0.105  Sum_probs=87.6

Q ss_pred             eEEEEEecCCCcEEEEEcC------------CCeEEEEEcCCCCcceEEE-eecc-----CCceeEEEe--ccCCCC-eE
Q 021657           94 VEDVTFCPSSAQEFCSVGD------------DSCLILWDARVGTSPVIKV-EKAH-----DADLHCVDW--NPLDDN-LI  152 (309)
Q Consensus        94 v~~~~~~~~~~~~l~s~~~------------dg~i~iwd~~~~~~~~~~~-~~~~-----~~~v~~~~~--~~~~~~-~l  152 (309)
                      ..+|...|+| ..+++++.            .|.|.++|+.+.+...... ..+.     .-....+..  .+ ++. +|
T Consensus        37 ~EDi~~~~dg-~~~issg~~~~~~~~~~~~~~G~i~~~dl~~~~~~~~~l~~~~~~~~~~~f~PhGi~l~~~~-dg~~~L  114 (340)
T d1v04a_          37 SEDLEILPNG-LAFISSGLKYPGIMSFDPDKSGKILLMDLNEKEPAVSELEIIGNTLDISSFNPHGISTFIDD-DNTVYL  114 (340)
T ss_dssp             CCEEEECTTS-EEEEEECCCC--------CCCCEEEEEETTSSSCCEEECEEECSSSCGGGCCEEEEEEEECT-TCCEEE
T ss_pred             cceEEECCCC-cEEEEecCccCCCCCCCCCCCCeEEEEecCCCCCcceEEEecCCCCCCcceeccceeEEEcC-CCcEEE
Confidence            4578888988 55555432            4899999997655322111 1111     112344444  33 343 34


Q ss_pred             EEE---cCCCcEEEEecCCCCCCCCCCceeeecc-CCCCeeEEEEecCCCcEEEEec---CC------------CcEEEE
Q 021657          153 LTG---SADNSVRMFDRRNLTSNGVGSPINKFEG-HSAAVLCVQWSPDKSSVFGSSA---ED------------GLLNIW  213 (309)
Q Consensus       153 ~~~---~~dg~i~i~d~~~~~~~~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~---~d------------g~i~iw  213 (309)
                      ++.   ....+|.+|++.....  ....+..+.. .....+.+++..++.. +++-.   .+            +...+|
T Consensus       115 ~vvnH~~~~~~ieif~~~~~~~--~l~~~~~v~~~~~~~pNDv~~~~~g~f-y~Tnd~~~~~~~~~~~e~~~~~~~g~v~  191 (340)
T d1v04a_         115 LVVNHPGSSSTVEVFKFQEEEK--SLLHLKTIRHKLLPSVNDIVAVGPEHF-YATNDHYFIDPYLKSWEMHLGLAWSFVT  191 (340)
T ss_dssp             EEEECSTTCCEEEEEEEETTTT--EEEEEEEECCTTCSSEEEEEEEETTEE-EEEESCSCCSHHHHHHHHHTTCCCEEEE
T ss_pred             EEEeccCCCceeEEEEEeCCCC--eEEEEeecCCccccCccceEEecCCCE-EEecCccCcChhhhhhhHhhcCCceeEE
Confidence            443   2456788888865210  0111222221 2345789999988884 55621   11            122233


Q ss_pred             eCCcccccccCCCCCcCCCCceeeeecCCCcceeeEEEccCCCeEEEEecCCCCCCCCCCeEEEEEccc
Q 021657          214 DYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKVVDFHWNASDPWTVVSVSDDCDSTGGGGTLQIWRMSD  282 (309)
Q Consensus       214 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~s~d~~s~~~dg~v~vw~~~~  282 (309)
                      ..+. +               ........-...+.|+++|++.+++++-+..       +.|++|++..
T Consensus       192 ~~~~-~---------------~~~~~~~~l~~pNGI~~s~d~~~lyVa~t~~-------~~i~~y~~~~  237 (340)
T d1v04a_         192 YYSP-N---------------DVRVVAEGFDFANGINISPDGKYVYIAELLA-------HKIHVYEKHA  237 (340)
T ss_dssp             EECS-S---------------CEEEEEEEESSEEEEEECTTSSEEEEEEGGG-------TEEEEEEECT
T ss_pred             EEcC-C---------------ceEEEcCCCCccceeEECCCCCEEEEEeCCC-------CeEEEEEeCC
Confidence            3222 0               0111112234579999999999999877766       8999999873

>d1xipa_ b.69.14.1 (A:) Nucleoporin NUP159 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nucleoporin domain
family: Nucleoporin domain
domain: Nucleoporin NUP159
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=94.62  E-value=0.65  Score=35.30  Aligned_cols=96  Identities=15%  Similarity=0.069  Sum_probs=60.5

Q ss_pred             CeEEEEEecCCCcEEEEEcCCCeEEEEEcCCCCcceEEEeeccCCceeEEEeccCCCCeEEEEcCCCcEEEEecCCCCCC
Q 021657           93 TVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSN  172 (309)
Q Consensus        93 ~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~  172 (309)
                      .|..++|+.+  . |+.. .++.+..++..+-.  .......-..++..+.++|   ..++....++.+.++++..    
T Consensus        88 ~v~~vafs~d--~-l~v~-~~~~l~~~~~~~l~--~~~~~~~~~~~~~~~~~~p---~~~~l~~~~~~~~~~~l~~----  154 (381)
T d1xipa_          88 DVIFVCFHGD--Q-VLVS-TRNALYSLDLEELS--EFRTVTSFEKPVFQLKNVN---NTLVILNSVNDLSALDLRT----  154 (381)
T ss_dssp             TEEEEEEETT--E-EEEE-ESSEEEEEESSSTT--CEEEEEECSSCEEEEEECS---SEEEEEETTSEEEEEETTT----
T ss_pred             CeEEEEeeCC--E-EEEE-eCCCEEEEEeeccc--cccccccccccccceecCC---ceeEEEecCCCEEEEEecc----
Confidence            5888999754  2 4443 44568888876654  3344444456788888876   4566667789999999987    


Q ss_pred             CCCCceeeec-----cCCCCeeEEEEecCCCcEEEEe
Q 021657          173 GVGSPINKFE-----GHSAAVLCVQWSPDKSSVFGSS  204 (309)
Q Consensus       173 ~~~~~~~~~~-----~~~~~v~~~~~~~~~~~l~~~~  204 (309)
                        ++......     .-.+.+.+++|++.|..++ ++
T Consensus       155 --~~~~~~~~~v~~~~~~~~~~~v~ws~kgkq~v-~~  188 (381)
T d1xipa_         155 --KSTKQLAQNVTSFDVTNSQLAVLLKDRSFQSF-AW  188 (381)
T ss_dssp             --CCEEEEEESEEEEEECSSEEEEEETTSCEEEE-EE
T ss_pred             --CccccccCCcceEEecCCceEEEEeCCcEEEE-Ee
Confidence              43221110     1235577788888777654 44

>d1xipa_ b.69.14.1 (A:) Nucleoporin NUP159 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nucleoporin domain
family: Nucleoporin domain
domain: Nucleoporin NUP159
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=93.79  E-value=0.99  Score=34.25  Aligned_cols=99  Identities=10%  Similarity=0.017  Sum_probs=55.9

Q ss_pred             cCCeEEEEEecCCCcEEEEEcCCCeEEEEEcCCCCcceEEE---eeccCCceeEEEeccCCCCeEEEEcCCCcEEE-Eec
Q 021657           91 EDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPVIKV---EKAHDADLHCVDWNPLDDNLILTGSADNSVRM-FDR  166 (309)
Q Consensus        91 ~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~---~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i-~d~  166 (309)
                      ..++..+.++|..   ++....+|.+.++++...+......   -..-...+.+++|++ .+..++++..+. ..+ -++
T Consensus       125 ~~~~~~~~~~p~~---~~l~~~~~~~~~~~l~~~~~~~~~~~v~~~~~~~~~~~v~ws~-kgkq~v~~~g~~-~q~k~~i  199 (381)
T d1xipa_         125 EKPVFQLKNVNNT---LVILNSVNDLSALDLRTKSTKQLAQNVTSFDVTNSQLAVLLKD-RSFQSFAWRNGE-MEKQFEF  199 (381)
T ss_dssp             SSCEEEEEECSSE---EEEEETTSEEEEEETTTCCEEEEEESEEEEEECSSEEEEEETT-SCEEEEEEETTE-EEEEEEE
T ss_pred             cccccceecCCce---eEEEecCCCEEEEEeccCccccccCCcceEEecCCceEEEEeC-CcEEEEEeCCCc-eeeccCC
Confidence            3567788887753   5566678999999998776322210   011235678888888 777777763322 211 122


Q ss_pred             CCCCCCCCCCceeeeccCCCCeeEEEEecCCCcE
Q 021657          167 RNLTSNGVGSPINKFEGHSAAVLCVQWSPDKSSV  200 (309)
Q Consensus       167 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l  200 (309)
                      ..      ...+.........+.+|.|-.+..++
T Consensus       200 ~~------~~~~~~p~~~~~~v~sI~WL~~~~F~  227 (381)
T d1xipa_         200 SL------PSELEELPVEEYSPLSVTILSPQDFL  227 (381)
T ss_dssp             CC------CHHHHTSCTTTSEEEEEEESSSSEEE
T ss_pred             CC------ccccCCCcCCCcceeEEEEecCceEE
Confidence            21      11111111123467888888776643

>d1kb0a2 b.70.1.1 (A:1-573) Quinoprotein alcohol dehydrogenase, N-terminal domain {Comamonas testosteroni [TaxId: 285]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Quinoprotein alcohol dehydrogenase, N-terminal domain
species: Comamonas testosteroni [TaxId: 285]

Probab=93.70  E-value=1.4  Score=35.64  Aligned_cols=21  Identities=10%  Similarity=0.196  Sum_probs=18.0

Q ss_pred             cEEEEEcCCCeEEEEEcCCCC
Q 021657          105 QEFCSVGDDSCLILWDARVGT  125 (309)
Q Consensus       105 ~~l~s~~~dg~i~iwd~~~~~  125 (309)
                      ..++.++.+|.+.++|..+++
T Consensus       328 ~~v~~~~k~G~l~~lDr~tGe  348 (573)
T d1kb0a2         328 KVILHAPKNGFFFVLDRTNGK  348 (573)
T ss_dssp             EEEEECCTTSEEEEEETTTCC
T ss_pred             eeeeeccccceeEEecccccc
Confidence            357788899999999998887

>d2ad6a1 b.70.1.1 (A:1-571) Methanol dehydrogenase, heavy chain {Methylophilus methylotrophus, w3a1 [TaxId: 17]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Methanol dehydrogenase, heavy chain
species: Methylophilus methylotrophus, w3a1 [TaxId: 17]

Probab=93.37  E-value=1.6  Score=35.28  Aligned_cols=51  Identities=20%  Similarity=0.106  Sum_probs=29.4

Q ss_pred             CcEEEEecCCCCCCCCCCceeeeccCCCCeeEEEEecCCCcEEEEecCCCcEEEEeCCc
Q 021657          159 NSVRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEK  217 (309)
Q Consensus       159 g~i~i~d~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~dg~i~iwd~~~  217 (309)
                      |.|.-+|+.+      ++.+.+.......... .+.-.+. |+..|+.||.++.+|.++
T Consensus       444 G~l~AiD~~T------G~~~W~~~~~~~~~~g-~l~Tagg-lVf~G~~dg~l~A~Da~t  494 (571)
T d2ad6a1         444 GQIRAFDLTT------GKAKWTKWEKFAAWGG-TLYTKGG-LVWYATLDGYLKALDNKD  494 (571)
T ss_dssp             EEEEEECTTT------CCEEEEEEESSCCCSB-CEEETTT-EEEEECTTSEEEEEETTT
T ss_pred             ccEEEeccCC------CceeeEcCCCCCCCcc-eeEecCC-EEEEECCCCeEEEEECCC
Confidence            3455666666      6665555422111111 1222344 445799999999999998

>d1kv9a2 b.70.1.1 (A:1-560) Quinoprotein alcohol dehydrogenase, N-terminal domain {Pseudomonas putida, hk5 [TaxId: 303]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Quinoprotein alcohol dehydrogenase, N-terminal domain
species: Pseudomonas putida, hk5 [TaxId: 303]

Probab=93.34  E-value=1.3  Score=35.64  Aligned_cols=51  Identities=10%  Similarity=0.025  Sum_probs=31.2

Q ss_pred             CcEEEEecCCCCCCCCCCceeeeccCCCCeeEEEEecCCCcEEEEecCCCcEEEEeCCc
Q 021657          159 NSVRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEK  217 (309)
Q Consensus       159 g~i~i~d~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~dg~i~iwd~~~  217 (309)
                      |.|.-||+.+      ++.+.+.... .+...-.+.-.+. |+..|+.||.++.+|.++
T Consensus       438 G~l~A~D~~t------Gk~~W~~~~~-~~~~gg~l~Tagg-lVF~G~~dg~l~A~Da~t  488 (560)
T d1kv9a2         438 GALLAWDPVK------QKAAWKVPYP-THWNGGTLSTAGN-LVFQGTAAGQMHAYSADK  488 (560)
T ss_dssp             EEEEEEETTT------TEEEEEEEES-SSCCCCEEEETTT-EEEEECTTSEEEEEETTT
T ss_pred             cceEEEeCCC------CeEeeeccCC-CCCCCceeEECCC-EEEEECCCCcEEEEECCC
Confidence            4566677776      6666655422 2222212233444 445789999999999998

>d2hu7a1 b.69.7.2 (A:9-321) Acylamino-acid-releasing enzyme, N-terminal donain {Aeropyrum pernix [TaxId: 56636]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Peptidase/esterase 'gauge' domain
family: Acylamino-acid-releasing enzyme, N-terminal donain
domain: Acylamino-acid-releasing enzyme, N-terminal donain
species: Aeropyrum pernix [TaxId: 56636]

Probab=93.25  E-value=0.79  Score=31.48  Aligned_cols=224  Identities=10%  Similarity=0.040  Sum_probs=110.5

Q ss_pred             CCCEEEEecCCCcEEEEeCCcccc-ccccCCccccccCC-----CCceeecCCCCCCCCcccCCCCCcCccccccccc-C
Q 021657           20 TEPYVLSGGKDKSVVLWSIQDHIT-SSATDPATAKSAGS-----SGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHE-D   92 (309)
Q Consensus        20 ~~~~l~t~~~dg~i~vwd~~~~~~-~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~   92 (309)
                      +.++|+++...|.+.++-+..+.. .+...+........     -.....+..+.....+...+.........+.... -
T Consensus        25 ~d~ll~~~~seG~vni~~l~g~~~vkLtkePI~~~~~Pk~~ldfi~f~RDV~kGkE~Hai~~~Nlk~~GEE~~i~spk~v  104 (313)
T d2hu7a1          25 GDKLLVVGFSEGSVNAYLYDGGETVKLNREPINSVLDPHYGVGRVILVRDVSKGAEQHALFKVNTSRPGEEQRLEAVKPM  104 (313)
T ss_dssp             TTEEEEEEEETTEEEEEEESSSSCEECCSSCCSEECEECTTBSEEEEEEECSTTSCCEEEEEEETTSTTCEEECTTSCSB
T ss_pred             CCcEEEEEeccceEEEEEEeCCEEEEEecccccCcCCCccCcceEEEEeehhcCcceeeEEEEccCCCCeeeEecCCceE
Confidence            344788888899999998877633 22223322221111     1112233334444444444443323333333333 4


Q ss_pred             CeEEEEEecCCCcEEEEEcCCCeEEEEEcCCCCcceEEEeec-------cCCceeEEEeccCCCCeEEEEcC-CCcEEEE
Q 021657           93 TVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPVIKVEKA-------HDADLHCVDWNPLDDNLILTGSA-DNSVRMF  164 (309)
Q Consensus        93 ~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~-------~~~~v~~~~~~~~~~~~l~~~~~-dg~i~i~  164 (309)
                      +|.++++  ++++..++|+......+|-++.++......+.+       ...-|..+.+-..+..-|+++.. .|.++++
T Consensus       105 RI~S~~y--ddk~vvF~Gased~~~LYviegGklrkL~~vPpFsFVtDI~~d~I~G~g~~~g~~~sfF~adl~SG~lri~  182 (313)
T d2hu7a1         105 RILSGVD--TGEAVVFTGATEDRVALYALDGGGLRELARLPGFGFVSDIRGDLIAGLGFFGGGRVSLFTSNLSSGGLRVF  182 (313)
T ss_dssp             EEEEEEE--CSSCEEEEEECSSCEEEEEEETTEEEEEEEESSCEEEEEEETTEEEEEEEEETTEEEEEEEETTTEEEEEE
T ss_pred             EEEEeee--cCceEEEecccCCceEEEEEeCCceeeeccCCCcceEEeccCCeEEEEeeecCCcceEEEEecccCCEEEe
Confidence            5555555  455788888888888999888777322222211       12334444443213333444444 6667776


Q ss_pred             ecCCCCCCCCCCceeeeccCCCCeeEEEEecCCCcEEEEe----cCCCcEEEEeCCcccccccCCCCCcCCCCceeeeec
Q 021657          165 DRRNLTSNGVGSPINKFEGHSAAVLCVQWSPDKSSVFGSS----AEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHA  240 (309)
Q Consensus       165 d~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~----~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~  240 (309)
                      +...                 +.++.....+..+ + +++    ++...| -+|++......-+.+      ..-+..+.
T Consensus       183 tpke-----------------GS~~~ay~~~gnK-V-~sdyEt~gEsywi-t~D~~s~~yerve~P------~kd~~sy~  236 (313)
T d2hu7a1         183 DSGE-----------------GSFSSASISPGMK-V-TAGLETAREARLV-TVDPRDGSVEDLELP------SKDFSSYR  236 (313)
T ss_dssp             CCSS-----------------EEEEEEEECTTSC-E-EEEEEESSCEEEE-EECTTTCCEEECCCS------SCHHHHHC
T ss_pred             cCCC-----------------CcccceeEccCce-e-eeccCCCCceEEE-EEecccCceeeeecC------cccceeec
Confidence            6544                 3445555555444 2 233    222334 447665222211111      11122111


Q ss_pred             CCCcceeeEEEccCCCeEEEEecCCCCCCCCCCeEEEEEcc
Q 021657          241 GHRDKVVDFHWNASDPWTVVSVSDDCDSTGGGGTLQIWRMS  281 (309)
Q Consensus       241 ~~~~~v~~~~~~~~~~~~~~s~s~d~~s~~~dg~v~vw~~~  281 (309)
                        .-.|.-+-+.|++.. ++.+-.|       |.=++|.--
T Consensus       237 --p~~I~~~~Y~Pdd~L-~iiakrd-------G~s~lF~nG  267 (313)
T d2hu7a1         237 --PTAITWLGYLPDGRL-AVVARRE-------GRSAVFIDG  267 (313)
T ss_dssp             --CSEEEEEEECTTSCE-EEEEEET-------TEEEEEETT
T ss_pred             --ceEEEeeeeCCCCcE-EEEEecC-------Cchheeecc
Confidence              124555668997764 3444444       888888754

>d1k3ia3 b.69.1.1 (A:151-537) Galactose oxidase, central domain {Fungi (Fusarium sp.) [TaxId: 29916]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Galactose oxidase, central domain
family: Galactose oxidase, central domain
domain: Galactose oxidase, central domain
species: Fungi (Fusarium sp.) [TaxId: 29916]

Probab=93.15  E-value=1.2  Score=33.45  Aligned_cols=114  Identities=8%  Similarity=-0.101  Sum_probs=60.7

Q ss_pred             CCCeEEEEcCCC-----------cEEEEecCCCCCCCCCCceeeec-cCCCCeeEEEEecCCCcEEEEecCC-CcEEEEe
Q 021657          148 DDNLILTGSADN-----------SVRMFDRRNLTSNGVGSPINKFE-GHSAAVLCVQWSPDKSSVFGSSAED-GLLNIWD  214 (309)
Q Consensus       148 ~~~~l~~~~~dg-----------~i~i~d~~~~~~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~l~~~~~~d-g~i~iwd  214 (309)
                      +++.++.|+.+.           .+.+||..+..    ...+.... .+.......++.+++. +++.|+.+ ..+.+||
T Consensus        30 ~gkv~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~----w~~~~~~~~~~~~~~~~~~~~~~g~-i~v~Gg~~~~~~~~yd  104 (387)
T d1k3ia3          30 SGRVLMWSSYRNDAFGGSPGGITLTSSWDPSTGI----VSDRTVTVTKHDMFCPGISMDGNGQ-IVVTGGNDAKKTSLYD  104 (387)
T ss_dssp             TTEEEEEEECCCTTTCSCCCSEEEEEEECTTTCC----BCCCEEEECSCCCSSCEEEECTTSC-EEEECSSSTTCEEEEE
T ss_pred             CCEEEEEEeecCcccCCCCCceeEEEEEECCCCc----EeecCCCCCCcccceeEEEEecCCc-EEEeecCCCcceeEec
Confidence            666666666321           26789998732    22222222 2333344667889998 45566544 6899999


Q ss_pred             CCcccccccCCCCCcCCCCceeeeecCCCcceeeEEEccCCCeEEEEecCCCCCCCCCCeEEEEEccc
Q 021657          215 YEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKVVDFHWNASDPWTVVSVSDDCDSTGGGGTLQIWRMSD  282 (309)
Q Consensus       215 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~s~d~~s~~~dg~v~vw~~~~  282 (309)
                      ..+..-..             .-.+... ..-..++..+++..+++.+..+  .+..-..+.+||...
T Consensus       105 ~~~~~w~~-------------~~~~~~~-r~~~~~~~~~dG~v~v~GG~~~--~~~~~~~v~~yd~~~  156 (387)
T d1k3ia3         105 SSSDSWIP-------------GPDMQVA-RGYQSSATMSDGRVFTIGGSWS--GGVFEKNGEVYSPSS  156 (387)
T ss_dssp             GGGTEEEE-------------CCCCSSC-CSSCEEEECTTSCEEEECCCCC--SSSCCCCEEEEETTT
T ss_pred             CccCcccc-------------ccccccc-ccccceeeecCCceeeeccccc--cccccceeeeecCCC
Confidence            88722110             0011111 1123455566666544433333  333346789999875

>d1crua_ b.68.2.1 (A:) Soluble quinoprotein glucose dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Soluble quinoprotein glucose dehydrogenase
family: Soluble quinoprotein glucose dehydrogenase
domain: Soluble quinoprotein glucose dehydrogenase
species: Acinetobacter calcoaceticus [TaxId: 471]

Probab=92.58  E-value=1.8  Score=33.75  Aligned_cols=54  Identities=9%  Similarity=0.163  Sum_probs=37.8

Q ss_pred             CCeEEEEEecCCCcEEEEEcCCCeEEEEEcCCCCcceEEEee------ccCCceeEEEecc
Q 021657           92 DTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPVIKVEK------AHDADLHCVDWNP  146 (309)
Q Consensus        92 ~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~------~~~~~v~~~~~~~  146 (309)
                      ...++|+|.|++ .+|++--..|.|++++..++....+..+.      ..+.....|+++|
T Consensus        27 ~~P~~la~~pdg-~llVter~~G~i~~v~~~~g~~~~i~~~~~~~~~~~ge~GLLgia~~P   86 (450)
T d1crua_          27 NKPHALLWGPDN-QIWLTERATGKILRVNPESGSVKTVFQVPEIVNDADGQNGLLGFAFHP   86 (450)
T ss_dssp             SSEEEEEECTTS-CEEEEETTTCEEEEECTTTCCEEEEEECTTCCCCTTSSCSEEEEEECT
T ss_pred             CCceEEEEeCCC-eEEEEEecCCEEEEEECCCCcEeecccCCccccccCCCCceeeEEeCC
Confidence            467899999998 77777655799999987776632222221      1234677899998

>d1qfma1 b.69.7.1 (A:1-430) Prolyl oligopeptidase, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Peptidase/esterase 'gauge' domain
family: Prolyl oligopeptidase, N-terminal domain
domain: Prolyl oligopeptidase, N-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=92.56  E-value=1.7  Score=33.53  Aligned_cols=115  Identities=11%  Similarity=0.072  Sum_probs=66.4

Q ss_pred             CeEEEEEecCCCcEEEEEcCC----CeEEEEEcCCCCcceEEEeeccCCceeEEEeccCCCCeEEEEcCC----------
Q 021657           93 TVEDVTFCPSSAQEFCSVGDD----SCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSAD----------  158 (309)
Q Consensus        93 ~v~~~~~~~~~~~~l~s~~~d----g~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d----------  158 (309)
                      .+...+++|++..++++-+.+    ..|++.|+.+++.. ...+.  ......++|.+ ++..|+-...+          
T Consensus       126 ~~~~~~~Spd~~~la~s~d~~G~e~~~l~v~Dl~tg~~~-~~~i~--~~~~~~~~W~~-D~~~~~Y~~~~~~~~~~~~~~  201 (430)
T d1qfma1         126 ALRGYAFSEDGEYFAYGLSASGSDWVTIKFMKVDGAKEL-PDVLE--RVKFSCMAWTH-DGKGMFYNAYPQQDGKSDGTE  201 (430)
T ss_dssp             EEEEEEECTTSSEEEEEEEETTCSCEEEEEEETTTTEEE-EEEEE--EECSCCEEECT-TSSEEEEEECCCCSSCCSSSC
T ss_pred             eecceEecCCCCEEEEEeccccCchheeEEeccCcceec-ccccc--cccccceEEcC-CCCEEEEEEeccccCcccccc
Confidence            345667899995555554443    46999999988731 12222  12235789999 77766543222          


Q ss_pred             ------CcEEEEecCCCCCCCCCCceeeeccC--CCCeeEEEEecCCCcEEEEec--CCCcEEEEeC
Q 021657          159 ------NSVRMFDRRNLTSNGVGSPINKFEGH--SAAVLCVQWSPDKSSVFGSSA--EDGLLNIWDY  215 (309)
Q Consensus       159 ------g~i~i~d~~~~~~~~~~~~~~~~~~~--~~~v~~~~~~~~~~~l~~~~~--~dg~i~iwd~  215 (309)
                            ..|..+.+.+..    ......+...  ...+..+..+++++++++...  .+....+|-+
T Consensus       202 ~~~~~~~~v~~h~lgt~~----~~d~~v~~e~d~~~~~~~~~~s~d~~~l~i~~~~~~~~~~~~~~~  264 (430)
T d1qfma1         202 TSTNLHQKLYYHVLGTDQ----SEDILCAEFPDEPKWMGGAELSDDGRYVLLSIREGCDPVNRLWYC  264 (430)
T ss_dssp             CCCCCCCEEEEEETTSCG----GGCEEEECCTTCTTCEEEEEECTTSCEEEEEEECSSSSCCEEEEE
T ss_pred             cccCCcceEEEEECCCCc----cccccccccccCCceEEeeeccCCcceeeEEeeccCCccEEEEEe
Confidence                  257777777643    2222333332  334667788999998775443  2334444433

>d1flga_ b.70.1.1 (A:) Ethanol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Ethanol dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=92.26  E-value=2.3  Score=34.36  Aligned_cols=51  Identities=16%  Similarity=0.255  Sum_probs=32.6

Q ss_pred             CcEEEEecCCCCCCCCCCceeeeccCCCCeeEEEEecCCCcEEEEecCCCcEEEEeCCc
Q 021657          159 NSVRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEK  217 (309)
Q Consensus       159 g~i~i~d~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~dg~i~iwd~~~  217 (309)
                      |.|.-+|+.+      ++.+.+..... ++..-.++-.+. ++.+|+.||.++.+|.++
T Consensus       466 G~l~AiD~~T------G~i~W~~~~~~-p~~~g~lstagg-lVF~Gt~dg~l~A~Da~T  516 (582)
T d1flga_         466 GSLRAMDPVS------GKVVWEHKEHL-PLWAGVLATAGN-LVFTGTGDGYFKAFDAKS  516 (582)
T ss_dssp             EEEEEECTTT------CCEEEEEEESS-CCCSCCEEETTT-EEEEECTTSEEEEEETTT
T ss_pred             CeEEEEcCCC------CcEEeecCCCC-CCccceeEEcCC-eEEEeCCCCeEEEEECCC
Confidence            4566677777      66666665332 222222334555 444799999999999998

>d1w6sa_ b.70.1.1 (A:) Methanol dehydrogenase, heavy chain {Methylobacterium extorquens [TaxId: 408]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Methanol dehydrogenase, heavy chain
species: Methylobacterium extorquens [TaxId: 408]

Probab=90.91  E-value=0.46  Score=38.80  Aligned_cols=80  Identities=14%  Similarity=0.132  Sum_probs=51.6

Q ss_pred             CeEEEEEcCCCCcceEEEeeccCCceeEEEeccCCCCeEEEEcCCCcEEEEecCCCCCCCCCCceeeeccCCC-CeeEEE
Q 021657          114 SCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGHSA-AVLCVQ  192 (309)
Q Consensus       114 g~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~-~v~~~~  192 (309)
                      |.|.-||+.+++  ..-. ..+..+..+=.++- .+.+++.|+.||.++-+|.++      ++.+.+++.... .-.-+.
T Consensus       453 G~l~A~D~~TG~--~~W~-~~~~~~~~gg~lsT-agglVF~G~~Dg~l~A~Da~T------Ge~LW~~~~~~~~~a~P~t  522 (596)
T d1w6sa_         453 GQIKAYNAITGD--YKWE-KMERFAVWGGTMAT-AGDLVFYGTLDGYLKARDSDT------GDLLWKFKIPSGAIGYPMT  522 (596)
T ss_dssp             EEEEEECTTTCC--EEEE-EEESSCCCSBCEEE-TTTEEEEECTTSEEEEEETTT------CCEEEEEECSSCCCSCCEE
T ss_pred             ceEEEEeCCCCc--eecc-cCCCCCCccceeEe-cCCEEEEECCCCeEEEEECCC------CcEeeEEECCCCcccCCeE
Confidence            678889998888  2222 22222222222233 567888899999999999999      999988864322 112355


Q ss_pred             EecCCCcEEEE
Q 021657          193 WSPDKSSVFGS  203 (309)
Q Consensus       193 ~~~~~~~l~~~  203 (309)
                      +.-+|++.++.
T Consensus       523 Y~~dGkQYvav  533 (596)
T d1w6sa_         523 YTHKGTQYVAI  533 (596)
T ss_dssp             EEETTEEEEEE
T ss_pred             EEECCEEEEEE
Confidence            66788764443

>d2ebsa1 b.69.13.1 (A:4-430) Oligoxyloglucan reducing end-specific cellobiohydrolase {Yeast (Geotrichum sp. M128) [TaxId: 203496]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Oligoxyloglucan reducing end-specific cellobiohydrolase
family: Oligoxyloglucan reducing end-specific cellobiohydrolase
domain: Oligoxyloglucan reducing end-specific cellobiohydrolase
species: Yeast (Geotrichum sp. M128) [TaxId: 203496]

Probab=90.57  E-value=2.3  Score=32.62  Aligned_cols=113  Identities=8%  Similarity=0.040  Sum_probs=62.4

Q ss_pred             ccCCeEEEEEecCCCcEEEEEcCCCeEEEEEcCCCCcceEEEe-------eccCCceeEEEeccCCCCeEEEEcCCC---
Q 021657           90 HEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPVIKVE-------KAHDADLHCVDWNPLDDNLILTGSADN---  159 (309)
Q Consensus        90 ~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~-------~~~~~~v~~~~~~~~~~~~l~~~~~dg---  159 (309)
                      -.+.|.+|+++|.++.++.++...|-|..-+ ..++  .-..+       ......+.+|+++|.+.+.+..+..+.   
T Consensus        10 ~gg~~~~i~~~P~~~~~~ya~~~~gGv~~S~-dgG~--tW~~~~~~~~~~~~~~~~~~~iavdp~np~~vy~~tg~~~~~   86 (427)
T d2ebsa1          10 GGGYITGIVAHPKTKDLLYARTDIGGAYRWD-AGTS--KWIPLNDFIEAQDMNIMGTESIALDPNNPDRLYLAQGRYVGD   86 (427)
T ss_dssp             BCSCEEEEEECSSSTTCEEEEESSSCEEEEE-TTTT--EEEESCTTCCGGGGGGCSEEEEEEETTEEEEEEEEECSCTTS
T ss_pred             CCCcEEEEEECCCCCCEEEEEecCCCEEEEE-CCCC--ceEECCCCCCCCCcccccEeEEEECCCCCCEEEEEeccccCC
Confidence            4678999999999888888888766554322 2233  12211       112345889999996666666654321   


Q ss_pred             -cEEEEecCCCCCCCCCCceeeec---------cCCCCeeEEEEecCCCcEEEEecCCCcE
Q 021657          160 -SVRMFDRRNLTSNGVGSPINKFE---------GHSAAVLCVQWSPDKSSVFGSSAEDGLL  210 (309)
Q Consensus       160 -~i~i~d~~~~~~~~~~~~~~~~~---------~~~~~v~~~~~~~~~~~l~~~~~~dg~i  210 (309)
                       ...+|--...     ++.-..+.         ........|.++|.....+..+..++.|
T Consensus        87 ~~~gi~~S~Dg-----G~TW~~~~~~~~~~~~~~~~~~~~~i~v~P~~~~~v~~~~~~~gl  142 (427)
T d2ebsa1          87 EWAAFYVSEDR-----GQSFTIYESPFPMGANDMGRNNGERLAVNPFNSNEVWMGTRTEGI  142 (427)
T ss_dssp             SCCEEEEESST-----TSEEEEEECSSCCCTTSTTTTSCCCEEECTTCTTCEEEECSSSCE
T ss_pred             cCccEEEeCCC-----CccceeecCCcccCccccCccceeEEEECCCccCcccccccccce
Confidence             1234433321     22211111         0123356788999765545456555443

>d1crua_ b.68.2.1 (A:) Soluble quinoprotein glucose dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Soluble quinoprotein glucose dehydrogenase
family: Soluble quinoprotein glucose dehydrogenase
domain: Soluble quinoprotein glucose dehydrogenase
species: Acinetobacter calcoaceticus [TaxId: 471]

Probab=89.53  E-value=3.7  Score=31.88  Aligned_cols=30  Identities=13%  Similarity=0.092  Sum_probs=25.4

Q ss_pred             eEEEEECCCCCEEEEecCCCcEEEEeCCcc
Q 021657           12 EFALAMCPTEPYVLSGGKDKSVVLWSIQDH   41 (309)
Q Consensus        12 V~~~~~~~~~~~l~t~~~dg~i~vwd~~~~   41 (309)
                      -++|+|.|+|++|++--.+|.|++++.+++
T Consensus        29 P~~la~~pdg~llVter~~G~i~~v~~~~g   58 (450)
T d1crua_          29 PHALLWGPDNQIWLTERATGKILRVNPESG   58 (450)
T ss_dssp             EEEEEECTTSCEEEEETTTCEEEEECTTTC
T ss_pred             ceEEEEeCCCeEEEEEecCCEEEEEECCCC
Confidence            479999999998888766899999987654

>d1h6la_ b.68.3.1 (A:) Thermostable phytase (3-phytase) {Bacillus amyloliquefaciens [TaxId: 1390]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Thermostable phytase (3-phytase)
family: Thermostable phytase (3-phytase)
domain: Thermostable phytase (3-phytase)
species: Bacillus amyloliquefaciens [TaxId: 1390]

Probab=88.51  E-value=3.7  Score=30.62  Aligned_cols=122  Identities=9%  Similarity=0.137  Sum_probs=75.4

Q ss_pred             CeEEEEE--ecC-CCcEEEEEcCCCeEEEEEcCCCCc-----ceEEEeeccCCceeEEEeccCCCCeEEEEcCCCcEEEE
Q 021657           93 TVEDVTF--CPS-SAQEFCSVGDDSCLILWDARVGTS-----PVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMF  164 (309)
Q Consensus        93 ~v~~~~~--~~~-~~~~l~s~~~dg~i~iwd~~~~~~-----~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~  164 (309)
                      .+..+|+  ++. +..+++....+|.+..|.+.....     ..+..+ .-...+..+.+++ ....|+.+-.+.-|..+
T Consensus       129 ~vYGlc~y~~~~~g~~~afv~~k~G~v~q~~l~~~~~g~v~~~lvr~f-~~~~q~EGCVvDd-e~~~LyisEE~~Giw~~  206 (353)
T d1h6la_         129 EVYGFSLYHSQKTGKYYAMVTGKEGEFEQYELNADKNGYISGKKVRAF-KMNSQTEGMAADD-EYGSLYIAEEDEAIWKF  206 (353)
T ss_dssp             SCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSSEEEEEEEEE-ECSSCEEEEEEET-TTTEEEEEETTTEEEEE
T ss_pred             cceEEEEEecCCCCeEEEEEEcCCceEEEEEEEcCCCCceeeEeeecc-CCCCccceEEEeC-CCCcEEEecCccceEEE
Confidence            3566666  554 334567777899999887743221     122233 2345788999998 77888888777666666


Q ss_pred             ecCCCCCCCCCCceeeecc--CCCCeeEEEEec--CC-CcEEEEecCCCcEEEEeCCc
Q 021657          165 DRRNLTSNGVGSPINKFEG--HSAAVLCVQWSP--DK-SSVFGSSAEDGLLNIWDYEK  217 (309)
Q Consensus       165 d~~~~~~~~~~~~~~~~~~--~~~~v~~~~~~~--~~-~~l~~~~~~dg~i~iwd~~~  217 (309)
                      +....... ....+....+  ....+..|++-.  ++ .+|+++...+++..+||...
T Consensus       207 ~a~~~~~~-~~~~i~~~~g~~l~~D~EGlaiy~~~~~~GylivSsQG~n~f~vydr~~  263 (353)
T d1h6la_         207 SAEPDGGS-NGTVIDRADGRHLTPDIEGLTIYYAADGKGYLLASSQGNSSYAIYERQG  263 (353)
T ss_dssp             ESSTTSCS-CCEEEEECSSSSCCSCEEEEEEEECGGGCEEEEEEEGGGTEEEEEESST
T ss_pred             EeccCCCc-cceeeecccCccccCCccccEEEEcCCCCeEEEEEcCCCCeEEEEecCC
Confidence            65422110 0222222222  345677777653  33 37888888899999999876

>d1w6sa_ b.70.1.1 (A:) Methanol dehydrogenase, heavy chain {Methylobacterium extorquens [TaxId: 408]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Methanol dehydrogenase, heavy chain
species: Methylobacterium extorquens [TaxId: 408]

Probab=88.30  E-value=5.4  Score=32.24  Aligned_cols=51  Identities=14%  Similarity=0.086  Sum_probs=29.8

Q ss_pred             CcEEEEecCCCCCCCCCCceeeeccCCCCeeEEEEecCCCcEEEEecCCCcEEEEeCCc
Q 021657          159 NSVRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEK  217 (309)
Q Consensus       159 g~i~i~d~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~dg~i~iwd~~~  217 (309)
                      |.|.-||+.+      ++.+.+... ..+..+=.++-.+. |+..|+.||.++.+|.++
T Consensus       453 G~l~A~D~~T------G~~~W~~~~-~~~~~gg~lsTagg-lVF~G~~Dg~l~A~Da~T  503 (596)
T d1w6sa_         453 GQIKAYNAIT------GDYKWEKME-RFAVWGGTMATAGD-LVFYGTLDGYLKARDSDT  503 (596)
T ss_dssp             EEEEEECTTT------CCEEEEEEE-SSCCCSBCEEETTT-EEEEECTTSEEEEEETTT
T ss_pred             ceEEEEeCCC------CceecccCC-CCCCccceeEecCC-EEEEECCCCeEEEEECCC
Confidence            3456666666      555544432 11221112233455 444799999999999998