Citrus Sinensis ID: 021662
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
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Close Homologs for Annotation Transfer
Close Homologs in the Non-Redundant Database Detected by BLAST 
Original result of BLAST against Nonredundant Database
GI ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Q cover ![]() |
H cover ![]() |
Identity ![]() |
E-value ![]() |
| Query | 309 | ||||||
| 449439309 | 303 | PREDICTED: uncharacterized protein LOC10 | 0.938 | 0.957 | 0.631 | 1e-104 | |
| 255542446 | 308 | conserved hypothetical protein [Ricinus | 0.860 | 0.863 | 0.625 | 5e-99 | |
| 388517393 | 283 | unknown [Lotus japonicus] | 0.854 | 0.932 | 0.715 | 1e-98 | |
| 18397089 | 300 | uncharacterized protein [Arabidopsis tha | 0.928 | 0.956 | 0.569 | 2e-98 | |
| 356533617 | 294 | PREDICTED: uncharacterized protein LOC10 | 0.906 | 0.952 | 0.612 | 3e-98 | |
| 356562617 | 294 | PREDICTED: uncharacterized protein LOC10 | 0.919 | 0.965 | 0.637 | 3e-98 | |
| 388519881 | 297 | unknown [Medicago truncatula] | 0.896 | 0.932 | 0.604 | 6e-98 | |
| 388514967 | 297 | unknown [Medicago truncatula] | 0.896 | 0.932 | 0.604 | 7e-98 | |
| 225451126 | 310 | PREDICTED: uncharacterized protein LOC10 | 0.944 | 0.941 | 0.588 | 8e-98 | |
| 356576747 | 295 | PREDICTED: uncharacterized protein LOC10 | 0.899 | 0.942 | 0.602 | 2e-96 |
| >gi|449439309|ref|XP_004137428.1| PREDICTED: uncharacterized protein LOC101222221 [Cucumis sativus] | Back alignment and taxonomy information |
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Score = 383 bits (983), Expect = e-104, Method: Compositional matrix adjust.
Identities = 187/296 (63%), Positives = 230/296 (77%), Gaps = 6/296 (2%)
Query: 18 SFSVSLPPI----AELPFPVKSIGGNESVRQCHGVLYDAALVVPTVLFVLYLVVHAKKNL 73
S S +L PI ++L V+ + S CHG+ Y A LV P+VLF +YL + A +N+
Sbjct: 10 SSSDALSPIGSFSSQLNGDVRGLTAASS--GCHGMWYSALLVAPSVLFAIYLAISAIRNI 67
Query: 74 TKLCNGRSYIMISYYALLWLACVLNLAWCSLQGWQCSAGKEVAWNLLSLFTVAAVLYLEI 133
K GRS+IMISYYALLW+ +LNLAWCSLQ W+CS GK+ WNLLSLFT++ +L+LEI
Sbjct: 68 KKFFLGRSFIMISYYALLWITTLLNLAWCSLQEWECSPGKKFLWNLLSLFTLSGMLFLEI 127
Query: 134 SLMAFLLQESYASGLETLARTFIISGIIVGVDMLLKVIYVFGFGFPLFIDVDSTHRMKWG 193
SL+AFLL+ +Y+ G+E L FI+SG +VGVD+LLKVIYVFGFG PLFI V S+H KWG
Sbjct: 128 SLVAFLLKANYSGGMEALLHNFIVSGTLVGVDVLLKVIYVFGFGIPLFIGVGSSHWSKWG 187
Query: 194 FWIIHELLLTAVYGFILFVHFSKWREKLPSRPAFYHYVVVMFVVSAVAFLVVSLAGTGAA 253
W IH+LLLTA YGFILFVHFSKWR+KLP RP+FY+Y+ VMFVVSA+AF L+ G
Sbjct: 188 VWTIHKLLLTAAYGFILFVHFSKWRDKLPPRPSFYNYIAVMFVVSALAFFASGLSAFGVR 247
Query: 254 FGIWLYNLTVICYHSLYLPLLYATFLADFFQEENFLLDNAYYSEMKDAGFFDADWE 309
FGIWLYN TVI YHS+YLP LY TFLADFFQEE+FLL+NAYYSEM+DAGFFD++W+
Sbjct: 248 FGIWLYNFTVISYHSMYLPFLYVTFLADFFQEEDFLLENAYYSEMRDAGFFDSEWD 303
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Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|255542446|ref|XP_002512286.1| conserved hypothetical protein [Ricinus communis] gi|223548247|gb|EEF49738.1| conserved hypothetical protein [Ricinus communis] | Back alignment and taxonomy information |
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| >gi|388517393|gb|AFK46758.1| unknown [Lotus japonicus] | Back alignment and taxonomy information |
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| >gi|18397089|ref|NP_566244.1| uncharacterized protein [Arabidopsis thaliana] gi|15028251|gb|AAK76714.1| unknown protein [Arabidopsis thaliana] gi|332640654|gb|AEE74175.1| uncharacterized protein [Arabidopsis thaliana] | Back alignment and taxonomy information |
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| >gi|356533617|ref|XP_003535358.1| PREDICTED: uncharacterized protein LOC100783991 [Glycine max] | Back alignment and taxonomy information |
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| >gi|356562617|ref|XP_003549566.1| PREDICTED: uncharacterized protein LOC100797540 [Glycine max] | Back alignment and taxonomy information |
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| >gi|388519881|gb|AFK48002.1| unknown [Medicago truncatula] | Back alignment and taxonomy information |
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| >gi|388514967|gb|AFK45545.1| unknown [Medicago truncatula] | Back alignment and taxonomy information |
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| >gi|225451126|ref|XP_002269068.1| PREDICTED: uncharacterized protein LOC100264088 [Vitis vinifera] | Back alignment and taxonomy information |
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| >gi|356576747|ref|XP_003556491.1| PREDICTED: uncharacterized protein LOC100819854 [Glycine max] | Back alignment and taxonomy information |
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Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST 
Original result of BLAST against Gene Ontology (AMIGO)
ID ![]() |
Alignment graph ![]() |
Length ![]() |
Definition ![]() |
Q cover ![]() |
H cover ![]() |
Identity ![]() |
E-value ![]() |
| Query | 309 | ||||||
| TAIR|locus:2114835 | 300 | Cand2 "AT3G05010" [Arabidopsis | 0.928 | 0.956 | 0.558 | 6.3e-92 | |
| TAIR|locus:2181231 | 297 | Cand8 "AT5G27210" [Arabidopsis | 0.928 | 0.966 | 0.561 | 1.1e-89 | |
| MGI|MGI:1345190 | 369 | Tpra1 "transmembrane protein, | 0.805 | 0.674 | 0.223 | 4.7e-09 | |
| RGD|620858 | 369 | Tpra1 "transmembrane protein, | 0.805 | 0.674 | 0.223 | 4.7e-09 | |
| WB|WBGene00008366 | 458 | tpra-1 [Caenorhabditis elegans | 0.731 | 0.493 | 0.236 | 1.3e-08 | |
| UNIPROTKB|Q5ZII3 | 364 | TPRA1 "Transmembrane protein a | 0.896 | 0.760 | 0.222 | 1.4e-08 | |
| UNIPROTKB|Q86W33 | 373 | TPRA1 "Transmembrane protein a | 0.773 | 0.640 | 0.225 | 1.4e-08 | |
| ZFIN|ZDB-GENE-050913-64 | 378 | zgc:114103 "zgc:114103" [Danio | 0.789 | 0.645 | 0.240 | 2.5e-08 |
| TAIR|locus:2114835 Cand2 "AT3G05010" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
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Score = 916 (327.5 bits), Expect = 6.3e-92, P = 6.3e-92
Identities = 166/297 (55%), Positives = 211/297 (71%)
Query: 23 LPPIAELPFPVKSIGGNES---------VRQCHGVLYDAALVVPTVLFVLYLVVHAKKNL 73
L IAE PF + + + + V +CHG L++ LV+ ++LFV YL AKK+L
Sbjct: 4 LSEIAESPFVISRLSPDSTATGGFIGGWVGKCHGFLHNTVLVLASILFVAYLAYEAKKSL 63
Query: 74 TKLCNGRSYIMISYYALLWLACVLNLAWCSLQGWQCSAGKEVAWNLLSLFTVAAVLYLEI 133
+KL N RSYIMI+YY LWL +LNLAWC LQ W+C+ GKEV WNLL+LFT + +L+LE+
Sbjct: 64 SKLSNRRSYIMIAYYGFLWLVSLLNLAWCCLQAWECTPGKEVIWNLLTLFTTSGMLFLEV 123
Query: 134 SLMAFLLQESYASGLETLARTFIISGIIVGVDMLLKVIYVFGFGFPLFIDVDS-THRMKW 192
SL+AFL Q +YASG E L RTF+ISG+++G+D+LLK IY+FGFG PLFID + H+ KW
Sbjct: 124 SLVAFLFQGNYASGAEALTRTFLISGLVIGLDLLLKAIYLFGFGVPLFIDNNEHIHKFKW 183
Query: 193 GFWIIHELLLTAVYGFILFVHFSKWREKLPSRPAFYHYXXXXXXXXXXXXXXXXXAGTGA 252
G W+IH+LLL +YG I F++ SKWRE+LP+RPAFY Y GA
Sbjct: 184 GLWVIHKLLLAGIYGMIFFMYNSKWRERLPARPAFYKYITVMLALNGLSLFACALTANGA 243
Query: 253 AFGIWLYNLTVICYHSLYLPLLYATFLADFFQEENFLLDNAYYSEMKDAGFFDADWE 309
FG+WLY +T +CYH+ YLPLLY TFLADFFQEE+ L+N YYSEMKDAGFFDADWE
Sbjct: 244 HFGLWLYGITSVCYHAFYLPLLYVTFLADFFQEEDLNLENVYYSEMKDAGFFDADWE 300
|
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| TAIR|locus:2181231 Cand8 "AT5G27210" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
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| MGI|MGI:1345190 Tpra1 "transmembrane protein, adipocyte asscociated 1" [Mus musculus (taxid:10090)] | Back alignment and assigned GO terms |
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| RGD|620858 Tpra1 "transmembrane protein, adipocyte asscociated 1" [Rattus norvegicus (taxid:10116)] | Back alignment and assigned GO terms |
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| WB|WBGene00008366 tpra-1 [Caenorhabditis elegans (taxid:6239)] | Back alignment and assigned GO terms |
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| UNIPROTKB|Q5ZII3 TPRA1 "Transmembrane protein adipocyte-associated 1 homolog" [Gallus gallus (taxid:9031)] | Back alignment and assigned GO terms |
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| UNIPROTKB|Q86W33 TPRA1 "Transmembrane protein adipocyte-associated 1" [Homo sapiens (taxid:9606)] | Back alignment and assigned GO terms |
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| ZFIN|ZDB-GENE-050913-64 zgc:114103 "zgc:114103" [Danio rerio (taxid:7955)] | Back alignment and assigned GO terms |
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Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Ezypred Server 
Original result from Ezypred Server
Fail to connect to Ezypred Server
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING 
Original result from the STRING server
| AT3G05010 | transmembrane protein, putative; transmembrane protein, putative; FUNCTIONS IN- molecular_function unknown; INVOLVED IN- biological_process unknown; LOCATED IN- membrane; EXPRESSED IN- 23 plant structures; EXPRESSED DURING- 13 growth stages; CONTAINS InterPro DOMAIN/s- Protein of unknown function, transmembrane-40 (InterPro-IPR018781); BEST Arabidopsis thaliana protein match is- unknown protein (TAIR-AT5G27210.1); Has 103 Blast hits to 103 proteins in 34 species- Archae - 0; Bacteria - 4; Metazoa - 71; Fungi - 0; Plants - 27; Viruses - 0; Other Eukaryotes - 1 (source- NCBI BLink). (300 aa) | ||||||||||
(Arabidopsis thaliana) | |||||||||||
| GP_ALPHA_1 | • | • | 0.862 | ||||||||
| AT3G59090 | • | 0.746 | |||||||||
| AT5G42090 | • | 0.746 | |||||||||
| AT5G18520 | • | 0.746 | |||||||||
| AT3G09570 | • | 0.746 | |||||||||
| AT2G36630 | • | 0.742 | |||||||||
| AT1G52780 | • | 0.742 | |||||||||
| AT5G02630 | • | 0.718 | |||||||||
| MLO13 | • | 0.679 | |||||||||
| MLO9 | • | 0.625 |
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST 
Original result of RPS-BLAST against CDD database part I
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() |
| Query | 309 | |||
| pfam10160 | 261 | pfam10160, Tmemb_40, Predicted membrane protein | 8e-78 |
| >gnl|CDD|220606 pfam10160, Tmemb_40, Predicted membrane protein | Back alignment and domain information |
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Score = 237 bits (607), Expect = 8e-78
Identities = 111/264 (42%), Positives = 163/264 (61%), Gaps = 11/264 (4%)
Query: 40 ESVRQCHGVLYDAALVVPTVLFVLYLVVHAKKNLTKLCNGRSYIMISYYALLWLACVLNL 99
V +D L+ P +LF+++L KL GRS I+I++Y LLWL ++N+
Sbjct: 2 RWVGGSRVRYWDTVLLAPNLLFLVFLAWKLGSAFAKLRTGRSPIVIAFYGLLWLVALVNI 61
Query: 100 AWCSLQGWQCSAGK-----EVAWNLLSLFTVAAVLYLEISLMAFLLQESYASGLETLART 154
A C+L + + K +V WN+L F +L+LE+S++ F LQ + S ++ R
Sbjct: 62 ARCALSMTESTPDKAATVDQVLWNILRFF----LLFLELSVIIFGLQFGHLSSKSSITRV 117
Query: 155 FIISGIIVGVDMLLKVIYVFGFG-FPLFID-VDSTHRMKWGFWIIHELLLTAVYGFILFV 212
+I+G++ +D LL+VI FGFG LFID D WGFW+ H L+LT VYGFIL +
Sbjct: 118 LLITGLVSALDTLLQVILEFGFGGVSLFIDNFDIGGHGGWGFWVAHSLVLTLVYGFILIL 177
Query: 213 HFSKWREKLPSRPAFYHYVVVMFVVSAVAFLVVSLAGTGAAFGIWLYNLTVICYHSLYLP 272
+ S+WRE+LP++P+FY+Y +M +++ + + +L GA FG+ LY +T CY +LYLP
Sbjct: 178 YHSRWRERLPAKPSFYNYCGIMALLNVLQLVGSALIANGAGFGLCLYGVTTFCYFALYLP 237
Query: 273 LLYATFLADFFQEENFLLDNAYYS 296
LLY TFLADFFQEE+ L N YYS
Sbjct: 238 LLYVTFLADFFQEEDLHLPNVYYS 261
|
This is a region of 280 amino acids from a group of proteins conserved from plants to humans. It is predicted to be a membrane protein but its function is otherwise unknown. Length = 261 |
Conserved Domains Detected by HHsearch 
Original result of HHsearch against CDD database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Probability ![]() |
| Query | 309 | |||
| PF10160 | 261 | Tmemb_40: Predicted membrane protein; InterPro: IP | 100.0 | |
| KOG4536 | 347 | consensus Predicted membrane protein [Function unk | 100.0 |
| >PF10160 Tmemb_40: Predicted membrane protein; InterPro: IPR018781 This entry represents 280 amino acid region found in a group of proteins conserved from plants to humans | Back alignment and domain information |
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Probab=100.00 E-value=1.4e-103 Score=728.82 Aligned_cols=257 Identities=42% Similarity=0.766 Sum_probs=251.0
Q ss_pred cccccccceehhhHHHhhHHHHHHHHHHhhhhhhhccccCCchHHHHHHHHHHHHHHHHHHHhHhhcccccCc-hhHHHH
Q 021662 40 ESVRQCHGVLYDAALVVPTVLFVLYLVVHAKKNLTKLCNGRSYIMISYYALLWLACVLNLAWCSLQGWQCSAG-KEVAWN 118 (309)
Q Consensus 40 ~w~~~c~g~~wDv~LlvPn~LFllFL~~~~~~s~~KL~~t~SpI~~tyY~ll~~v~llnl~rc~vsm~~~t~~-~~~~wn 118 (309)
+|+++|||++||+++++||++|++||++|+||+++|||+||||||+|||+++|+++++|++||++|||||+|+ ++++||
T Consensus 2 ~~~~~~~v~~~d~~l~vPn~lFllfL~~~~~~s~~KL~~~~SpI~~tyY~llw~v~llnl~rc~vsm~~~~~~~~~~~d~ 81 (261)
T PF10160_consen 2 RWIGGSRVRIWDVVLLVPNLLFLLFLAWRLRKSRRKLRHTRSPIFITYYALLWVVALLNLARCFVSMWVCSPGKGGIADK 81 (261)
T ss_pred cccccCceEehHHHHHHHHHHHHHHHHHhchHHHHHHhcCCCccHHHHHHHHHHHHHHHHHHHHHHHHhccCccchhHHH
Confidence 5999999999999999999999999999999999999999999999999999999999999999999999875 589999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcccchhHHHHHHHHHHHHHHHHHHHHHHHHhhccc-cceeecCC-CCCCccchhHH
Q 021662 119 LLSLFTVAAVLYLEISLMAFLLQESYASGLETLARTFIISGIIVGVDMLLKVIYVFGFG-FPLFIDVD-STHRMKWGFWI 196 (309)
Q Consensus 119 iLwl~trf~lL~lEvSvvvFgl~g~~~~s~~sl~Rtl~iS~lia~~d~l~kaiy~f~~g-vplf~~~~-~~~hgg~~FW~ 196 (309)
++|+++||+||++|+||++||+||||+|||||||||+++|++++++|+++|++|+|++| +|++.+++ .++||||+||+
T Consensus 82 ~lW~ilrfflL~lEvSvvvFgL~fghlds~~Si~r~l~iT~~is~~~s~~Q~ilef~~~d~~l~~~~~~~~~hgg~~fW~ 161 (261)
T PF10160_consen 82 VLWNILRFFLLSLEVSVVVFGLQFGHLDSRSSIKRTLLITGLISLADSLTQAILEFGFGDVPLFIENFDLFGHGGWGFWF 161 (261)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHHHheeecCcccccCCCCCcCCcCCeehHH
Confidence 99999999999999999999999999999999999999999999999999999999999 89998765 44589999999
Q ss_pred HHHHHHHHHHHHHHHhccccccccCCCCchhHHHHHHHHHHHHHHHHHHHhhhcCCcceeEEechhhHHHHHhhhHHHHH
Q 021662 197 IHELLLTAVYGFILFVHFSKWREKLPSRPAFYHYVVVMFVVSAVAFLVVSLAGTGAAFGIWLYNLTVICYHSLYLPLLYA 276 (309)
Q Consensus 197 ~ss~~f~lVY~~I~~LP~t~~rerLPar~SFY~Yv~iL~lLN~~q~~Gs~Ll~~~~~~GlClvd~Tt~~Yfaly~PLlY~ 276 (309)
+||++|++||++|++||++|||+|||+|||||+||++|++||++|++||+|+++|+++|+|+||+|+++|||+|+|++|+
T Consensus 162 ~~s~~f~~vY~~I~~L~~~r~r~~LPar~SFY~Y~~~L~~LN~~q~~Gs~Ll~~~~~~Glc~~d~t~~~Yfa~y~PllY~ 241 (261)
T PF10160_consen 162 ISSLVFALVYGFILILTPLRWRDRLPARPSFYRYVGILFLLNLLQSIGSGLLGYGASFGLCLVDLTTFLYFALYPPLLYV 241 (261)
T ss_pred HHHHHHHHHHHHHHHHHhccccccCCCCccHHHHHHHHHHHHHHHHHHHHHHhcCCCceEEeccHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhhcccccccchhhhh
Q 021662 277 TFLADFFQEENFLLDNAYYS 296 (309)
Q Consensus 277 TFLadFF~~e~~~~~~~yYS 296 (309)
|||||||||||.|+||.|||
T Consensus 242 TFL~~fF~~~d~~L~~~Yys 261 (261)
T PF10160_consen 242 TFLADFFQEEDVHLENVYYS 261 (261)
T ss_pred HHHHHHhCccccCCCCCCCC
Confidence 99999999999999999997
|
These are predicted to be membrane proteins, but apart from that their function is unknown. |
| >KOG4536 consensus Predicted membrane protein [Function unknown] | Back alignment and domain information |
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Homologous Structure Templates
Structure Templates Detected by BLAST 
Original result of BLAST against Protein Data Bank
No homologous structure with e-value below 0.005
Structure Templates Detected by RPS-BLAST 
Original result of RPS-BLAST against PDB70 database
No hit with e-value below 0.005
Structure Templates Detected by HHsearch 
Original result of HHsearch against PDB70 database
No hit with probability above 80.00
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST 
Original result of RPS-BLAST against SCOP70(version1.75) database
No hit with e-value below 0.005
Homologous Domains Detected by HHsearch 
Original result of HHsearch against SCOP70(version1.75) database
No hit with probability above 80.00