Citrus Sinensis ID: 021708

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------31
Protein Sequence
MSASDGDENGFQNTGSLEITGQIMVIAIIVLFFVVVFILFLHLYAKWFWWRIEQTPEPSPSRRHRRRRRFVFAPGQDPAVALRAGLDPAILRKIPVVAFNQQDFKDGLECAVCLSELEDGEKARLLPKCNHGFHVECIDMWFQSHSTCPLCRNPVDVERSNNGNGEPSVEIDIQNSQESLESGYSTDSPPNFPTNVLFWGNENLVSSAGVCVHEGVSSSSSSSSSSSSTSSSSSEMNNSRRGAEMLVIDIPVNSMSEHFSSLSPVEETKSPMTTRLRSLKRLLSREKRVSPCGTTGTSSSCDVEQVSRA
Secondary Structure (PSIPRED)
cccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccHHccccccHHHHHccccEEEEccccccccccEEEcccccccccccccccccccccccHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEEEcccccccccccccccccccccccHHHHHHHHHHcccccccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
ccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccHHHHHHccEEEEEccccccccEEEEEHcccccccEEEEcccccccccHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccEEEccccccccccccccccccccccccccccccccccccccccccccccEEEEEccccccccccccccccHccccccHHHHHHHHHHHcccccccccccccccccccccccccc
Coil and Loop (DISEMBL)
msasdgdengfqntgsleitGQIMVIAIIVLFFVVVFILFLHLYAKWFWWrieqtpepspsrrhrrrrrfvfapgqdpaVALRagldpailrkipvvafnqqdfkdglECAVCLseledgekarllpkcnhgfhveCIDMWfqshstcplcrnpvdversnngngepsveIDIQNsqeslesgystdsppnfptnvlfwgnenlvssAGVCvhegvsssssssssssstsssssemnnsrRGAEMLVIdipvnsmsehfsslspveetkspmtTRLRSLKRLLSrekrvspcgttgtssscdveqvsra
Flexible Loop (DISEMBL)
msasdgdengfqnTGSLEITGQIMVIAIIVLFFVVVFILFLHLYAKWFWWRIEqtpepspsrrhrRRRRFvfapgqdpavaLRAGLDPAILRKIPVVAFNQQDFKDGLECAVCLSELEDGEKARLLPKCNHGFHVECIDMWFQSHSTCPLCRNPVDVERSNNGNGEPSVEIDIQNSQESLESGYSTDSPPNFPTNVLFWGNENLVSSAGVCVHEGVsssssssssssstsssssemnnsRRGAEMLVIDIPVNSMSEHFSslspveetkspmttrlrslkrllsrekrvspcgttgtssscdveqvsra
Low Complexity Region (SEG)
MSASDGDENGFQNTGSLEITGQIMviaiivlffvvvfilflhlYAKWFWWRIEQTPEPSPSrrhrrrrrFVFAPGQDPAVALRAGLDPAILRKIPVVAFNQQDFKDGLECAVCLSELEDGEKARLLPKCNHGFHVECIDMWFQSHSTCPLCRNPVDVERSNNGNGEPSVEIDIQNSQESLESGYSTDSPPNFPTNVLFWGNENLVSSAGVCVHEGVsssssssssssstsssssEMNNSRRGAEMLVIDIPVNSMSEHFSSLSPVEETKSPMTTrlrslkrllsrekrVSPcgttgtssscDVEQVSRA
Disordered region (IsUnstruct)
***************SLEITGQIMVIAIIVLFFVVVFILFLHLYAKWFWWRIE****************FVFAPGQDPAVALRAGLDPAILRKIPVVAFNQQDFKDGLECAVCLSELEDGEKARLLPKCNHGFHVECIDMWFQSHSTCPLCRNP**************************************PTNVLFWGNENLVSSAGVCVH************************************************************************************************
Disordered Region (DISOPRED)
*******************TGQIMVIAIIVLFFVVVFILFLHLYAKWFWWR*************************************AILRKIPVVAFNQQDFKDGLECAVCLSELEDGEKARLLPKCNHGFHVECIDMWFQSHSTCPLCRNP***********************************************************************************************************************************************************
Disordered Region (DISEMBL)
**********FQNTGSLEITGQIMVIAIIVLFFVVVFILFLHLYAKWFWWRIEQTP*********RRRRFVFAPGQDPAVALRAGLDPAILRKIPVVAFNQQDFKDGLECAVCLSELEDGEKARLLPKCNHGFHVECIDMWFQSHSTCPLCRNPVDVERSNNGNGEPSVEIDIQN************SPPNFPTNVLFWGNENLVSSAGVCV***************************RRGAEMLVIDIPVNSMSEHFSSLSPVEETKSPMTTRLRSLKRLLSRE***********************
Disordered Region (DISPRO)
***************SLEITGQIMVIAIIVLFFVVVFILFLHLYAKWFWWRI******************************RAGLDPAILRKIPVVAFNQQDFKDGLECAVCLSELEDGEKARLLPKCNHGFHVECIDMWFQSHSTCPLCRNPVDVE**************************************************************************************M****************************************************************
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MSASDGDENGFQNTGSLEITGQIMVIAIIVLFFVVVFILFLHLYAKWFWWRIEQTPEPSPSRRHRRRRRFVFAPGQDPAVALRAGLDPAILRKIPVVAFNQQDFKDGLECAVCLSELEDGEKARLLPKCNHGFHVECIDMWFQSHSTCPLCRNPVDVERSNNGNGEPSVEIDIQNSQESLESGYSTDSPPNFPTNVLFWGNENLVSSAGVCVHEGVSSSSSSSSSSSSTSSSSSEMNNSRRGAEMLVIDIPVNSMSEHFSSLSPVEETKSPMTTRLRSLKRLLSREKRVSPCGTTGTSSSCDVEQVSRA
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	309	2.2.26 [Sep-21-2011]
P0C035	310	RING-H2 finger protein AT	yes	no	0.838	0.835	0.471	8e-59
Q9XF63	324	RING-H2 finger protein AT	no	no	0.844	0.805	0.429	2e-55
Q8L9T5	304	RING-H2 finger protein AT	no	no	0.805	0.819	0.359	8e-38
Q9LUL6	204	Putative RING-H2 finger p	no	no	0.372	0.563	0.495	7e-26
Q9LZJ6	257	RING-H2 finger protein AT	no	no	0.456	0.548	0.410	3e-25
Q9SL78	390	Putative RING-H2 finger p	no	no	0.488	0.387	0.393	3e-23
Q8LF65	235	RING-H2 finger protein AT	no	no	0.339	0.446	0.413	1e-22
O22255	227	RING-H2 finger protein AT	no	no	0.411	0.559	0.442	9e-22
Q9LRB7	325	E3 ubiquitin-protein liga	no	no	0.216	0.206	0.538	3e-21
Q8W571	323	RING-H2 finger protein AT	no	no	0.440	0.421	0.350	7e-20

>sp|P0C035|ATL60_ARATH RING-H2 finger protein ATL60 OS=Arabidopsis thaliana GN=ATL60 PE=2 SV=1

 Score =  227 bits (579), Expect = 8e-59,   Method: Compositional matrix adjust.
 Identities = 140/297 (47%), Positives = 183/297 (61%), Gaps = 38/297 (12%)

Query: 18  EITGQIMVIAIIVLFFVVVFILFLHLYAKWFWWRIEQ----------TPEPSPSRRHRRR 67
           E  G++++ +I+ +F  ++F+L LHLYA+ FWWR+EQ           P  +   R+ RR
Sbjct: 19  ETMGKVLLFSIVSIFTGILFLLLLHLYARLFWWRVEQHFNLNLIQSDDPGSTVIGRNPRR 78

Query: 68  RRFVFAPGQDPAVALRAGLDPAILRKIPVVAFNQQDFKDGLECAVCLSELEDGEKARLLP 127
           RRFVFA  Q+  +   AGLD  IL+ I VV F   DFKDGLECAVCLS+L DG+KAR+LP
Sbjct: 79  RRFVFAQSQEDPLH-NAGLDSKILQSIHVVVFKCTDFKDGLECAVCLSDLVDGDKARVLP 137

Query: 128 KCNHGFHVECIDMWFQSHSTCPLCRNPV-DVERSNNGNGEPSVEIDIQNSQESLESGYST 186
           +CNHGFHV+CIDMWFQSHSTCPLCRN V  VE + +G  E   +       ++ ESG+ST
Sbjct: 138 RCNHGFHVDCIDMWFQSHSTCPLCRNTVGSVEDTTHGGSEGLPQ------NQNFESGHST 191

Query: 187 DS----------------PPNFPTNVLFWGNENLVSSAGVCVHEGVSSSSSSSSSSSSTS 230
           +                 P +FPTNVL WG++N V SAG+ V E   S + ++S +    
Sbjct: 192 NQHNPSQDQSFVHEFSTEPLSFPTNVLVWGDQNQVRSAGLVVTEESPSGNFAASYNDHQQ 251

Query: 231 SSSSEMNNSRRGAEMLVIDIPVNSMSEHFSSLSPVEETKSPMTTRLRSLKRLLSREK 287
            SSS  +   +    +V+DIP NS SE+ S     EE KSPM TRLR LK +LSREK
Sbjct: 252 ESSSTRS---QEVTAVVVDIPDNS-SENLSERIDEEEPKSPMFTRLRLLKNVLSREK 304

Arabidopsis thaliana (taxid: 3702)

>sp|Q9XF63|ATL3_ARATH RING-H2 finger protein ATL3 OS=Arabidopsis thaliana GN=ATL3 PE=2 SV=1

 Score =  216 bits (550), Expect = 2e-55,   Method: Compositional matrix adjust.
 Identities = 133/310 (42%), Positives = 170/310 (54%), Gaps = 49/310 (15%)

Query: 11  FQNTGSLEITGQIMVIAIIVLFFVVVFILFLHLYAKWFWWRIEQTPEPS----------- 59
           F +  + E+T +I++ AIIVLF  V+F+L LHLYAK +WWRI+Q  +             
Sbjct: 12  FGDLSTEEVTSKIILTAIIVLFMAVLFVLILHLYAKLYWWRIDQLQQQQQQQQQEQEQEE 71

Query: 60  -------PSRRHRRRRRFVFAPGQDPAVALRAGLDPAILRKIPVVAFNQQDFKDGLECAV 112
                  P    R+RRRF+F PGQD       GL    L  +P+V F Q   KDGLEC++
Sbjct: 72  DQSSIAPPVVTRRQRRRFIFVPGQDALS--NTGLTSFELSSLPIVFFRQDSCKDGLECSI 129

Query: 113 CLSELEDGEKARLLPKCNHGFHVECIDMWFQSHSTCPLCRNPV-DVERSNNGNGEP---- 167
           CLSEL  G+KARLLPKCNH FHVECIDMWFQSHSTCP+CRN V   E++++   E     
Sbjct: 130 CLSELVKGDKARLLPKCNHSFHVECIDMWFQSHSTCPICRNTVLGPEQASSKRVEQVPDN 189

Query: 168 SVEIDIQNSQESLESGYSTDSPPNFPTNVLFWGNENLVSSAGVCVHEGVSSSSSSSSSSS 227
           +      N+     S  ST SP  FPTNVL WG ++ VS+    V               
Sbjct: 190 AENAGTTNNNHDALSQLSTSSP-EFPTNVLVWGRQDQVSTGNTNV--------------- 233

Query: 228 STSSSSSEMNNSRRGAEMLVIDIP--------VNSMSEHFSSLSPVEETKSPMTTRLRSL 279
            T    +  N + +  E +V+DI         V+S S     +   EE KSPMTTRLRSL
Sbjct: 234 GTQEDGAAGNGASQSQEAVVLDISDSSSRNHNVSSSSSSMRFIVEEEEAKSPMTTRLRSL 293

Query: 280 KRLLSREKRV 289
           +R LSR+KRV
Sbjct: 294 RRFLSRDKRV 303

Arabidopsis thaliana (taxid: 3702)

>sp|Q8L9T5|ATL2_ARATH RING-H2 finger protein ATL2 OS=Arabidopsis thaliana GN=ATL2 PE=2 SV=2

 Score =  157 bits (398), Expect = 8e-38,   Method: Compositional matrix adjust.
 Identities = 104/289 (35%), Positives = 151/289 (52%), Gaps = 40/289 (13%)

Query: 7   DENGFQNTGSLEITGQIMVIAIIVLFFVVVFILFLHLYAKWFWWRIEQTPEPSPSRRHRR 66
           ++N F  + +  ++G+IM+ AI++LFFVV+ ++FLHLYA+W+  R  +      SR  R 
Sbjct: 14  EDNNFSGSKTYAMSGKIMLSAIVILFFVVILMVFLHLYARWYLLRARRRHLRRRSRNRRA 73

Query: 67  RRRFVFAPGQDPAVALRA--GLDPAILRKIPVVAFNQQDFKDGLECAVCLSELEDGEKAR 124
              F  A     A ++ A  GLDP +++ +PV  F+ +  KD +ECAVCLSE E+ E  R
Sbjct: 74  TMVFFTADPSTAATSVVASRGLDPNVIKSLPVFTFSDETHKDPIECAVCLSEFEESETGR 133

Query: 125 LLPKCNHGFHVECIDMWFQSHSTCPLCRNPVDVERSNNGNGEPSVEIDIQNSQESLESGY 184
           +LP C H FHV+CIDMWF SHSTCPLCR+ V          E    I+   +    E   
Sbjct: 134 VLPNCQHTFHVDCIDMWFHSHSTCPLCRSLV----------ESLAGIESTAAAREREVVI 183

Query: 185 STDSPPNFPTNVLFWGNENLVSSAGVCVHEGVSSSSSSSSSSSSTSSSSSEMNNSRRGAE 244
           + DS P     VL                  +  SSSS  +     S SS+M     G +
Sbjct: 184 AVDSDP-----VLV-----------------IEPSSSSGLTDEPHGSGSSQMLREDSGRK 221

Query: 245 MLVIDIPVNSMSEHFSSL----SPVEET-KSPMTTRLRSLKRLLSREKR 288
              I++P  + SE    L    SP  ++ +SPM +R+ S  R+LSR++R
Sbjct: 222 PAAIEVPRRTFSEFEDELTRRDSPASQSFRSPM-SRMLSFTRMLSRDRR 269

May be involved in the early steps of the plant defense signaling pathway.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9LUL6|ATL61_ARATH Putative RING-H2 finger protein ATL61 OS=Arabidopsis thaliana GN=ATL61 PE=3 SV=1

 Score =  118 bits (295), Expect = 7e-26,   Method: Compositional matrix adjust.
 Identities = 58/117 (49%), Positives = 75/117 (64%), Gaps = 2/117 (1%)

Query: 83  RAGLDPAILRKIPVVAFNQQDFKDGLECAVCLSELEDGEKARLLPKCNHGFHVECIDMWF 142
           R G+ P +LR IP+V FN +DFK  LEC VCLSEL DG+KAR+LP C+H FHVECID W 
Sbjct: 61  RVGIKPYVLRSIPIVDFNTKDFKYVLECVVCLSELADGDKARVLPSCDHWFHVECIDSWL 120

Query: 143 QSHSTCPLCRNPVDVERSNNGN--GEPSVEIDIQNSQESLESGYSTDSPPNFPTNVL 197
           QS+STCP+CR  V +++S      G      +  + Q S    +STD P N  T ++
Sbjct: 121 QSNSTCPICRKRVCLKQSRTRPELGGRDKSFNQNHDQTSEHHEFSTDPPTNTDTAII 177

Arabidopsis thaliana (taxid: 3702)

>sp|Q9LZJ6|ATL5_ARATH RING-H2 finger protein ATL5 OS=Arabidopsis thaliana GN=ATL5 PE=2 SV=1

 Score =  115 bits (289), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 62/151 (41%), Positives = 89/151 (58%), Gaps = 10/151 (6%)

Query: 10  GFQNTGS--LEITGQIMVIAIIVLFFVVVFILFLHLYAKWFWWRIEQTPEPSPSRRHRRR 67
           G  N GS    + G+IM+ ++I+LF  V+ IL  H YA+W + R  +      S   R  
Sbjct: 13  GNMNHGSSRYSLNGKIMLASVIILFVAVILILCFHSYARWLFRRQNRRIRRRISAHLRS- 71

Query: 68  RRFVFAPGQDPA--VALRAGLDPAILRKIPVVAFNQQDFKDGLE-CAVCLSELEDGEKAR 124
                A  +DP    +  + LDP +L KIP+  ++ +  +  LE C+VCLSE E+ ++ R
Sbjct: 72  ----LAAARDPTQSSSSLSPLDPTVLEKIPIFVYSVKTHESPLEECSVCLSEFEEDDEGR 127

Query: 125 LLPKCNHGFHVECIDMWFQSHSTCPLCRNPV 155
           +LPKC H FHV+CID WF+S S+CPLCR PV
Sbjct: 128 VLPKCGHVFHVDCIDTWFRSRSSCPLCRAPV 158

Arabidopsis thaliana (taxid: 3702)

>sp|Q9SL78|ATL12_ARATH Putative RING-H2 finger protein ATL12 OS=Arabidopsis thaliana GN=ATL12 PE=3 SV=1

 Score =  108 bits (271), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 63/160 (39%), Positives = 86/160 (53%), Gaps = 9/160 (5%)

Query: 26  IAIIVLFFVVVFIL--FLHLYAKWFWWRIEQTPEPSPSR-RHRRRRRFVFAPGQDPAVAL 82
           +AII   F +VF L   L +YAK F   +    +    R RH R  + +F        + 
Sbjct: 41  LAIITGVFSIVFTLTFVLLVYAKCFHNDLRSETDSDGERIRHDRLWQGLFNRS-----SR 95

Query: 83  RAGLDPAILRKIPVVAFNQ-QDFKDGLECAVCLSELEDGEKARLLPKCNHGFHVECIDMW 141
            +GLD   +  +P   F+  +  K GLEC+VCLS+ ED E  RLLPKC H FH+ CID W
Sbjct: 96  FSGLDKKAIESLPFFRFSALKGLKQGLECSVCLSKFEDVEILRLLPKCRHAFHIGCIDQW 155

Query: 142 FQSHSTCPLCRNPVDVERSNNGNGEPSVEIDIQNSQESLE 181
            + H+TCPLCRN V++E   +  G  S  + I N  E+ E
Sbjct: 156 LEQHATCPLCRNRVNIEDDLSVLGNSSTSLRILNQSETRE 195

Arabidopsis thaliana (taxid: 3702)

>sp|Q8LF65|ATL17_ARATH RING-H2 finger protein ATL17 OS=Arabidopsis thaliana GN=ATL17 PE=2 SV=2

 Score =  107 bits (266), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 48/116 (41%), Positives = 66/116 (56%), Gaps = 11/116 (9%)

Query: 41  LHLYAKWFWWRIEQTPEPSPSRRHRRRRRFVFAPGQDPAVALRAGLDPAILRKIPVVAFN 100
           LHLY +W+  R       SP  R      F   P   P      GL+P+I++ +P+  F+
Sbjct: 18  LHLYYRWYLLR------SSPFNRTTAASTFFTDPSSTPG-----GLNPSIIKSLPIFTFS 66

Query: 101 QQDFKDGLECAVCLSELEDGEKARLLPKCNHGFHVECIDMWFQSHSTCPLCRNPVD 156
                  +EC+VCLSE +D E  R++P C H FHV CIDMWF SHS+CPLCR+ ++
Sbjct: 67  AVTALFAMECSVCLSEFKDNESGRVMPNCKHTFHVHCIDMWFHSHSSCPLCRSQIE 122

May be involved in the early steps of the plant defense signaling pathway.

Arabidopsis thaliana (taxid: 3702)

>sp|O22255|ATL64_ARATH RING-H2 finger protein ATL64 OS=Arabidopsis thaliana GN=ATL64 PE=2 SV=1

 Score =  104 bits (259), Expect = 9e-22,   Method: Compositional matrix adjust.
 Identities = 62/140 (44%), Positives = 84/140 (60%), Gaps = 13/140 (9%)

Query: 19  ITGQIMVIAIIVLFFVVVFILFLHLYAKWFWWRIEQTPEPSPSRRHRRRRRFVFAPGQDP 78
           + G+IM+ ++IVLF  V+ IL  H YA+W +    +       RR R   R + A  +D 
Sbjct: 24  LNGKIMLSSVIVLFVAVIMILCFHSYARWLF----RRHNRRIRRRIRSHLRTLSASPRDQ 79

Query: 79  AVALRAGLDPAILRKIPVVAF---NQQDFKDGLECAVCLSELEDGEKARLLPKCNHGFHV 135
           A      LD A+L KIP+  +   N    ++  EC+VCLSE E+ ++ RLLPKC H FHV
Sbjct: 80  A------LDQAVLDKIPIFVYSSKNPPPPEEKEECSVCLSEFEEEDEGRLLPKCGHSFHV 133

Query: 136 ECIDMWFQSHSTCPLCRNPV 155
           +CID WF+S STCPLCR PV
Sbjct: 134 DCIDTWFRSRSTCPLCRAPV 153

Arabidopsis thaliana (taxid: 3702)

>sp|Q9LRB7|EL5_ORYSJ E3 ubiquitin-protein ligase EL5 OS=Oryza sativa subsp. japonica GN=EL5.1 PE=1 SV=1

 Score =  102 bits (255), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 42/78 (53%), Positives = 53/78 (67%), Gaps = 11/78 (14%)

Query: 86  LDPAILRKIPVVAFNQQDFKD-----------GLECAVCLSELEDGEKARLLPKCNHGFH 134
           +DP +LR +PV  +++                G+ECAVCL+ELEDGE+AR LP+C HGFH
Sbjct: 99  VDPEVLRSLPVTVYSRSTAAAAAKEEEEEDDDGVECAVCLAELEDGEEARFLPRCGHGFH 158

Query: 135 VECIDMWFQSHSTCPLCR 152
            EC+DMW  SHSTCPLCR
Sbjct: 159 AECVDMWLGSHSTCPLCR 176

Functions as a E3 ubiquitin-protein ligase in cooperation with the E2 ubiquitin conjugating enzymes UBC5A and UBC5B. Involved in root development. Required for the maintenance of cell viability after the initiation of root primordial formation. May mediates the degradation of cytotoxic proteins produced in root cells after the actions of auxin, cytokinin and jasmonic acid. Mediates 'Lys-48'-linked polyubiquitination of MBP in vitro.

Oryza sativa subsp. japonica (taxid: 39947)

EC: 6

EC: .

EC: 3

EC: .

EC: 2

EC: .

EC: -

>sp|Q8W571|ATL32_ARATH RING-H2 finger protein ATL32 OS=Arabidopsis thaliana GN=ATL32 PE=2 SV=3

 Score = 98.2 bits (243), Expect = 7e-20,   Method: Compositional matrix adjust.
 Identities = 54/154 (35%), Positives = 84/154 (54%), Gaps = 18/154 (11%)

Query: 22  QIMVIAIIVLFFVVVFILFLHLYAKWFWWRIEQTPEPSPSRRHRRRRRFVFAPGQDPAVA 81
           +  V A++V  F +  +L +++       R      P  S R+ R R        +   +
Sbjct: 46  KTTVFAVLVTLFFLTGLLSVYI-------RHCARSNPDSSTRYFRNR-------ANDGSS 91

Query: 82  LRAGLDPAILRKIPVVAFNQ-QDFKDG---LECAVCLSELEDGEKARLLPKCNHGFHVEC 137
            R GLD A++   PV A++  ++ K G   LECA+CL+ELED E  RLLP CNH FH++C
Sbjct: 92  RRGGLDNAVVESFPVFAYSSVKESKIGSKDLECAICLNELEDHETVRLLPICNHLFHIDC 151

Query: 138 IDMWFQSHSTCPLCRNPVDVERSNNGNGEPSVEI 171
           ID W  SH+TCP+CR+ +  + +  G+ +  V +
Sbjct: 152 IDTWLYSHATCPVCRSNLTAKSNKPGDEDDGVPL 185

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	309
225441963	304	PREDICTED: RING-H2 finger protein ATL60-	0.886	0.901	0.603	3e-73
147855454	959	hypothetical protein VITISV_027500 [Viti	0.889	0.286	0.586	8e-73
357514357	321	RING-H2 finger protein ATL3C [Medicago t	0.961	0.925	0.528	8e-71
255586327	281	RING-H2 finger protein ATL1M, putative [	0.860	0.946	0.597	2e-70
356522452	314	PREDICTED: RING-H2 finger protein ATL3-l	0.964	0.949	0.537	1e-66
356560202	319	PREDICTED: RING-H2 finger protein ATL3-l	0.961	0.931	0.521	1e-64
224138520	276	predicted protein [Populus trichocarpa]	0.867	0.971	0.539	3e-63
297847782	320	zinc finger family protein [Arabidopsis	0.883	0.853	0.488	6e-62
12003386	256	Avr9/Cf-9 rapidly elicited protein 132 [	0.792	0.957	0.474	2e-58
449492548	267	PREDICTED: RING-H2 finger protein ATL60-	0.802	0.928	0.481	5e-58

>gi|225441963|ref|XP_002263215.1| PREDICTED: RING-H2 finger protein ATL60-like [Vitis vinifera]

 Score =  281 bits (718), Expect = 3e-73,   Method: Compositional matrix adjust.
 Identities = 183/303 (60%), Positives = 211/303 (69%), Gaps = 29/303 (9%)

Query: 15  GSLEITGQIMVIAIIVLFFVVVFILFLHLYAKWFWWRIEQTPEPSPSRRHRRRRRFVFAP 74
            ++E++G+IMV+AIIVLFFVVVF+LFLHLYAKWFWWR             RRRRRFVFAP
Sbjct: 14  AAVELSGKIMVVAIIVLFFVVVFVLFLHLYAKWFWWRTADRGSSF-GGSRRRRRRFVFAP 72

Query: 75  GQDPAV-ALRAGLDPAILRKIPVVAFNQQDFKDGLECAVCLSELEDGEKARLLPKCNHGF 133
           GQDPA+ A+R GLDP+IL  IPV+ F  ++FKDGLECAVCLSEL  GEKARLLPKCNHGF
Sbjct: 73  GQDPALPAMRRGLDPSILGSIPVLVFRPEEFKDGLECAVCLSELVTGEKARLLPKCNHGF 132

Query: 134 HVECIDMWFQSHSTCPLCRNPVDVERSNNGNGEPSVEIDIQNSQESLESG-YSTDSPPNF 192
           HVECIDMWFQSHSTCPLCRN V    S+     P     IQ S ES  +G YS +S PN+
Sbjct: 133 HVECIDMWFQSHSTCPLCRNLVATVLSDPTT--PQSPESIQLSDESSAAGDYSLES-PNY 189

Query: 193 PTNVLFWGNENLVSSAGVCVHEGVSSSSSSSSSSSSTSSSSSEMNNSRRGAEMLVIDIPV 252
           PTN+LFWGN+  V+SAG+C+ EG +SS    +S            N   G  MLVIDIP 
Sbjct: 190 PTNILFWGNQTRVTSAGLCLEEGAASSQPPCASP----------GNGPDG--MLVIDIPR 237

Query: 253 NSMSEHFSSLSPV------EETKSPMTTRLRSLKRLLSREKRVSPCGTTGTSSSCDVEQV 306
            + +E+FSSLSP       EE KSPMTTRLRSLKRLLSREKRV PC    +  S DVEQ 
Sbjct: 238 QT-AENFSSLSPSTGGTSEEELKSPMTTRLRSLKRLLSREKRVVPC----SPGSVDVEQG 292

Query: 307 SRA 309
            R 
Sbjct: 293 GRG 295

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147855454|emb|CAN79606.1| hypothetical protein VITISV_027500 [Vitis vinifera]

 Score =  280 bits (715), Expect = 8e-73,   Method: Compositional matrix adjust.
 Identities = 177/302 (58%), Positives = 206/302 (68%), Gaps = 27/302 (8%)

Query: 15  GSLEITGQIMVIAIIVLFFVVVFILFLHLYAKWFWWRIEQTPEPSPSRRHRRRRRFVFAP 74
            ++E++G+IMV+AIIVLFFVVVF+LFLHLYAKWFWWR           R RRRR  VFAP
Sbjct: 14  AAVELSGKIMVVAIIVLFFVVVFVLFLHLYAKWFWWRTADRGSSFGGSRRRRRRF-VFAP 72

Query: 75  GQDPAV-ALRAGLDPAILRKIPVVAFNQQDFKDGLECAVCLSELEDGEKARLLPKCNHGF 133
           GQDPA+ A+R GLDP+IL  IPV+ F  ++FKDGLECAVCLSEL  GEKARLLPKCNHGF
Sbjct: 73  GQDPALPAMRRGLDPSILGSIPVLVFRPEEFKDGLECAVCLSELVTGEKARLLPKCNHGF 132

Query: 134 HVECIDMWFQSHSTCPLCRNPVDVERSNNGNGEPSVEIDIQNSQESLESGYSTDSPPNFP 193
           HVECIDMWFQSHSTCPLCRN V    S+     P     IQ S ES  +G  +   PN+P
Sbjct: 133 HVECIDMWFQSHSTCPLCRNLVATVLSDPTT--PQSPESIQLSDESSAAGDYSLESPNYP 190

Query: 194 TNVLFWGNENLVSSAGVCVHEGVSSSSSSSSSSSSTSSSSSEMNNSRRGAEMLVIDIPVN 253
           TN+LFWGN+  V+SAG+C+ EG +SS    +S  +                MLVIDIP  
Sbjct: 191 TNILFWGNQTRVTSAGLCLEEGAASSQPPCASPGNGPDG------------MLVIDIPRQ 238

Query: 254 SMSEHFSSLSPV------EETKSPMTTRLRSLKRLLSREKRVSPCGTTGTSSSCDVEQVS 307
           + +E+FSSLSP       EE KSPMTTRLRSLKRLLSREKRV PC    +  S DVEQ  
Sbjct: 239 T-AENFSSLSPSTGGTSEEELKSPMTTRLRSLKRLLSREKRVVPC----SPGSVDVEQGG 293

Query: 308 RA 309
           R 
Sbjct: 294 RG 295

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357514357|ref|XP_003627467.1| RING-H2 finger protein ATL3C [Medicago truncatula] gi|355521489|gb|AET01943.1| RING-H2 finger protein ATL3C [Medicago truncatula]

 Score =  273 bits (698), Expect = 8e-71,   Method: Compositional matrix adjust.
 Identities = 168/318 (52%), Positives = 209/318 (65%), Gaps = 21/318 (6%)

Query: 2   SASDGDENGFQNTGSLEITGQIMVIAIIVLFFVVVFILFLHLYAKWFWWRIEQTPEPSPS 61
           +A++G  +   ++  +EITG+IMV+AII LF VV+F+L LHLYAKWFWWR E+   P P 
Sbjct: 8   TATNGSSDALGDSNRIEITGKIMVLAIIFLFMVVMFVLMLHLYAKWFWWRFEERTVPQPR 67

Query: 62  RRHRRRRRFVFAPGQDPAV--ALRAGLDPAILRKIPVVAFNQQDFKDGLECAVCLSELED 119
            R RRRRRFVFAPGQDP V  + + GL+  IL+ +PV+ F  +DFKDGLECAVCL ++ +
Sbjct: 68  NR-RRRRRFVFAPGQDPVVYGSHQIGLEAKILKSLPVLVFKNEDFKDGLECAVCLCDVVE 126

Query: 120 GEKARLLPKCNHGFHVECIDMWFQSHSTCPLCRNPVDVE----RSNNGNGEPSVEIDIQN 175
           GEK RLLPKCNHGFH++CIDMWFQSHSTCPLCRN V VE     S   NGE  + + + +
Sbjct: 127 GEKTRLLPKCNHGFHLDCIDMWFQSHSTCPLCRNLVSVESCKPNSTTSNGE-EMNVLVSS 185

Query: 176 SQESLESGYSTDSPPNFPTNVLFWGN--ENLVSSAGVCVHEGVSSSSSSSSSSSSTSSSS 233
             E+L      +S  NFPTNVL WGN    + SS GV + EG S     S+SSSS++  S
Sbjct: 186 EGENLSHVNGLES-SNFPTNVLVWGNSQRQVSSSFGVSLEEGSSHQQPCSTSSSSSTLGS 244

Query: 234 SEMNNSR-RGAEMLVIDIPVNSMSEHFSSLSPV-----EETKSPMTTRLRSLKRLLSREK 287
              N+ R  G  MLVIDIP+ S     S          +E KSPM +RLRS KRLLSR+K
Sbjct: 245 DNGNSGRCNGNGMLVIDIPLPSDFSSSSLSPSDNRYVEDEMKSPMASRLRSFKRLLSRDK 304

Query: 288 RVSPCGTTGTSSSCDVEQ 305
           + SP     T SS DVEQ
Sbjct: 305 KFSP----STPSSMDVEQ 318

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255586327|ref|XP_002533814.1| RING-H2 finger protein ATL1M, putative [Ricinus communis] gi|223526251|gb|EEF28567.1| RING-H2 finger protein ATL1M, putative [Ricinus communis]

 Score =  272 bits (695), Expect = 2e-70,   Method: Compositional matrix adjust.
 Identities = 168/281 (59%), Positives = 205/281 (72%), Gaps = 15/281 (5%)

Query: 11  FQNTGSLEITGQIMVIAIIVLFFVVVFILFLHLYAKWFWWRIEQTPEPSPSRRHRRRRRF 70
             ++ ++EITG+IMVIAII+LF VVVF+L LHLYAKWFWWRIE+   P  SRR+RRR  F
Sbjct: 4   LDDSPTVEITGRIMVIAIIILFMVVVFVLLLHLYAKWFWWRIEEPTSPPHSRRNRRR--F 61

Query: 71  VFAPGQDPAVALRAGLDPAILRKIPVVAFNQQDFKDGLECAVCLSELEDGEKARLLPKCN 130
           VF P QDP   +R GLD ++LR +PVV F  +DFKDGLECAVCLSE+  GEKARLLPKCN
Sbjct: 62  VFTPAQDP---VRRGLDMSVLRSLPVVIFQSEDFKDGLECAVCLSEIAQGEKARLLPKCN 118

Query: 131 HGFHVECIDMWFQSHSTCPLCRNPVDVERS-NNGNGEPSVEIDIQNSQESLESGYSTDSP 189
           HGFHV+CIDMWFQSHSTCPLCRN V  ++  ++ +     E + Q+ +E L  GYST+S 
Sbjct: 119 HGFHVDCIDMWFQSHSTCPLCRNSVAPQQECSSFDSNDFQESNTQSQEEILIPGYSTES- 177

Query: 190 PNFPTNVLFWGNENLVSSAGVCVHEGVSSSSSSSSSSSSTSSSSSEMNNSRRGAEMLVID 249
           PNFPTNVLFWG+   VS+ G     G+   SS+ ++SSS+ S  S  ++SRR  EMLVID
Sbjct: 178 PNFPTNVLFWGDLTQVSTGGG-GGGGLEEGSSTQATSSSSGSGGSRSSSSRRQEEMLVID 236

Query: 250 IPVNSMSEHFSSLSPVEETKSPM-TTRLRSLKRLLSREKRV 289
           IP+       +S    EE+KSPM T RLRSLKRLLSREKRV
Sbjct: 237 IPLQ------TSDYTEEESKSPMPTQRLRSLKRLLSREKRV 271

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356522452|ref|XP_003529860.1| PREDICTED: RING-H2 finger protein ATL3-like [Glycine max]

 Score =  259 bits (662), Expect = 1e-66,   Method: Compositional matrix adjust.
 Identities = 171/318 (53%), Positives = 204/318 (64%), Gaps = 20/318 (6%)

Query: 1   MSASDGDENGFQNTGSLEITGQIMVIAIIVLFFVVVFILFLHLYAKWFWWRIEQTPEPSP 60
           MSASD   N +  + ++EITG+IMV+AII LF VVVF+L LHLYAKWFWW +E+   P P
Sbjct: 1   MSASD---NAWGESDTIEITGKIMVVAIIFLFMVVVFVLVLHLYAKWFWWSMEENATPQP 57

Query: 61  SRRHRRRRRFVFAPGQDPAV--ALRAGLDPAILRKIPVVAFNQQDFKDGLECAVCLSELE 118
             R RRRRRFVFAPGQD  +    + GLDP++L+ +PV+ F  +DFK+GLECAVCLSE+ 
Sbjct: 58  RHRRRRRRRFVFAPGQDSVIYETHQVGLDPSVLKSLPVLVFQPEDFKEGLECAVCLSEIV 117

Query: 119 DGEKARLLPKCNHGFHVECIDMWFQSHSTCPLCRNPVDVERSN-NGNGEPSVEIDIQNSQ 177
            GEK RLLPKCNHGFHV+CIDMWF SHSTCPLCRNPV  E S    +          +S 
Sbjct: 118 QGEKLRLLPKCNHGFHVDCIDMWFHSHSTCPLCRNPVAFESSKCEESNVSGNSDSSSSSY 177

Query: 178 ESLESGYSTDSPPNFPTNVLFWGNENLVSSAGVCV-------HEGVSSSSSSSSSSSSTS 230
           E    G S   P NFPTNVL WGN+  VSS GV +        EG S S     S+  T+
Sbjct: 178 EENSGGVSGLEPSNFPTNVLVWGNQTQVSSIGVSLEEKEEEEEEGTSQSQQPPCSTPPTA 237

Query: 231 SSSSEMNNSRRGAEMLVIDIP---VNSMSEHFSSLSPVEETKSPMTTRLRSLKRLLSREK 287
           SSS+  N + R   MLVIDIP    +S      S    EE KSPM   LRS KRLLSR+K
Sbjct: 238 SSSASSNVNGRCHGMLVIDIPSECTSSSLSPSGSRCAEEEVKSPMAATLRSFKRLLSRDK 297

Query: 288 RVSPCGTTGTSSSCDVEQ 305
           ++SPC    + SS DVEQ
Sbjct: 298 KLSPC----SPSSVDVEQ 311

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356560202|ref|XP_003548383.1| PREDICTED: RING-H2 finger protein ATL3-like [Glycine max]

 Score =  253 bits (645), Expect = 1e-64,   Method: Compositional matrix adjust.
 Identities = 169/324 (52%), Positives = 207/324 (63%), Gaps = 27/324 (8%)

Query: 1   MSASDGDENGFQNTGSLEITGQIMVIAIIVLFFVVVFILFLHLYAKWFWWRIEQTPEPSP 60
           MSASD   + +  +G++EITG+IMV+AII LF VVVF+L LHLYAKWFWW +E+   P P
Sbjct: 1   MSASD---DTWGESGTIEITGKIMVVAIIFLFMVVVFVLVLHLYAKWFWWSMEENAAPQP 57

Query: 61  SRRHRRRRRFVFAPGQDPAV--ALRAGLDPAILRKIPVVAFNQQDFKDGLECAVCLSELE 118
            RR RRRRRFVFAPGQDP +    + GLDP++L+ + V+ F  ++FK+GLECAVCLSE+ 
Sbjct: 58  RRR-RRRRRFVFAPGQDPVIYETHQVGLDPSVLKSLAVLVFQPEEFKEGLECAVCLSEIV 116

Query: 119 DGEKARLLPKCNHGFHVECIDMWFQSHSTCPLCRNPVDVERSN--NGNGEPSVEIDIQNS 176
           +GEK RLLPKCNHGFHV+CIDMWF SHSTCPLCRNPV  E S     N       D  +S
Sbjct: 117 EGEKLRLLPKCNHGFHVDCIDMWFHSHSTCPLCRNPVTFESSKIEENNNVLGSSEDSSSS 176

Query: 177 QESLESGYSTDSPPNFPTNVLFWGNENLVSSAGVCVHEGVSSSSSSSS------------ 224
            E    G S   P NFPTNVL WGN+  VSS GV + + +       +            
Sbjct: 177 HEENSGGGSGLEPSNFPTNVLVWGNQTQVSSFGVSLEDSLEEKQEQGTSQCQQPPPCSPS 236

Query: 225 SSSSTSSSSSEMNNSRRGAEMLVIDIP---VNSMSEHFSSLSPVEETKSPMTTRLRSLKR 281
            + S+SSSS+  N + R   MLVIDIP    +S      S    +E KSPM   LRS KR
Sbjct: 237 PTPSSSSSSARGNVNGRCHGMLVIDIPNECTSSSLSPSGSRCAEDEVKSPMAVTLRSFKR 296

Query: 282 LLSREKRVSPCGTTGTSSSCDVEQ 305
           LLSREK++SPC    + SS DVEQ
Sbjct: 297 LLSREKKLSPC----SPSSVDVEQ 316

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224138520|ref|XP_002326623.1| predicted protein [Populus trichocarpa] gi|222833945|gb|EEE72422.1| predicted protein [Populus trichocarpa]

 Score =  248 bits (633), Expect = 3e-63,   Method: Compositional matrix adjust.
 Identities = 156/289 (53%), Positives = 208/289 (71%), Gaps = 21/289 (7%)

Query: 11  FQNTGSLEITGQIMVIAIIVLFFVVVFILFLHLYAKWFWWRIEQTPEPSPSRRHRRRRRF 70
             ++ ++EITG++MV+AI++LF VVVF++FLHLYAKWFWWRIE+   P    R R+RRR+
Sbjct: 4   LDDSATMEITGKVMVVAIVILFLVVVFVIFLHLYAKWFWWRIEEPAHPQ-QSRRRQRRRY 62

Query: 71  VFAPGQDPAVALRAGLDPAILRKIPVVAFNQQDFKDGLECAVCLSELEDGEKARLLPKCN 130
           VF PGQDP   +R GL+ +ILR +P+V F  +DF  GLECAVCLS+  +GEK RLLPKCN
Sbjct: 63  VFNPGQDP---VRRGLELSILRSLPLVIFQPKDFPGGLECAVCLSDAVEGEKVRLLPKCN 119

Query: 131 HGFHVECIDMWFQSHSTCPLCRNPV--DVERSNNGNGEPSVEIDIQNSQESLESGYSTDS 188
           HGFH++CIDMWFQS+STCPLCR+ V    + ++  N    +E++IQ+ +E L SGYS +S
Sbjct: 120 HGFHLDCIDMWFQSYSTCPLCRSSVAPQAQCASGANNNNDLEVNIQSPEEILISGYSIES 179

Query: 189 PPNFPTNVLFWGNENLVSSAGVCVHEGVSSSSSSSSSSSSTSSSSSEMNNSRRGAEMLVI 248
            P+FPTNVLFWG++ LVS+ G  + EG SSS+SS+ SSS+ +          R  EMLVI
Sbjct: 180 -PDFPTNVLFWGDQTLVSTGGGSLEEGPSSSASSAPSSSAGA----------RHDEMLVI 228

Query: 249 DIPVNSMSEHFSSLSPVEETKSPMTTRLRSLKRLLSREKRVSPCGTTGT 297
           D+PV        +L+  +E+K P  TRLRSLKRLLSREKR+ P  + G+
Sbjct: 229 DVPVQIT----DNLAEDQESKLPTPTRLRSLKRLLSREKRLPPNCSNGS 273

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297847782|ref|XP_002891772.1| zinc finger family protein [Arabidopsis lyrata subsp. lyrata] gi|297337614|gb|EFH68031.1| zinc finger family protein [Arabidopsis lyrata subsp. lyrata]

 Score =  243 bits (621), Expect = 6e-62,   Method: Compositional matrix adjust.
 Identities = 154/315 (48%), Positives = 199/315 (63%), Gaps = 42/315 (13%)

Query: 18  EITGQIMVIAIIVLFFVVVFILFLHLYAKWFWWRIEQ--------TPEPSPS--RRHRRR 67
           E  G++++ AI+ +F  ++F+L LHLYA+ FWWR+EQ        + EP  +   R+ RR
Sbjct: 14  ETMGKVLLFAIVSIFTGILFLLLLHLYARLFWWRVEQHFNLNLIQSDEPGSTVIGRNPRR 73

Query: 68  RRFVFAPGQ-DPAVALRAGLDPAILRKIPVVAFNQQDFKDGLECAVCLSELEDGEKARLL 126
           RRFVFA GQ DP     AGLD  IL+ I V+ F   DFKDGLECAVCLSEL DG+KAR+L
Sbjct: 74  RRFVFAQGQEDPP--HNAGLDSKILQSIHVIVFKSTDFKDGLECAVCLSELVDGDKARVL 131

Query: 127 PKCNHGFHVECIDMWFQSHSTCPLCRNPV-DVERSNNGNGEPSVEIDIQNSQESLESGYS 185
           P+CNHGFHV+CIDMWFQSHSTCPLCRN V  VE + +G  E   +       ++ ESG+S
Sbjct: 132 PRCNHGFHVDCIDMWFQSHSTCPLCRNTVGSVEETIHGGSEGLPQ------NQNFESGHS 185

Query: 186 TDS----------------PPNFPTNVLFWGNENLVSSAGVCVHEGVSSSSSSSSSSSST 229
           ++                 P +FPTNVL WG++N V SAG+ V E  S S + + SS+  
Sbjct: 186 SNQHNTSQDQSPVLRFSTEPLSFPTNVLVWGDQNQVRSAGLVVTEE-SPSGNFADSSNDH 244

Query: 230 SSSSSEMNNSRRGAEM--LVIDIPVNSMSEHFSSLSPVEETKSPMTTRLRSLKRLLSREK 287
              SS  N   R  E+  +V+DIP NS SE+       EE KSPM TRLRSLK+ LSREK
Sbjct: 245 QQESSSTNTHIRAQEVRAVVVDIPANS-SENLPERIDEEEPKSPMFTRLRSLKKFLSREK 303

Query: 288 R--VSPCGTTGTSSS 300
           +  VS  G++GT+S+
Sbjct: 304 KGVVSVIGSSGTNSN 318

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|12003386|gb|AAG43550.1|AF211532_1 Avr9/Cf-9 rapidly elicited protein 132 [Nicotiana tabacum]

 Score =  232 bits (592), Expect = 2e-58,   Method: Compositional matrix adjust.
 Identities = 141/297 (47%), Positives = 175/297 (58%), Gaps = 52/297 (17%)

Query: 14  TGSLEITGQIMVIAIIVLFFVVVFILFLHLYAKWFW-WRIEQTPEPSPSRRHRRRRRFVF 72
           +G +E+T +IM++ II LF VVVFI FLHLY KWFW +R E T  P+   R RRRRRF F
Sbjct: 9   SGMIELTAKIMMVVIIFLFLVVVFIFFLHLYTKWFWRYRQEDTGNPNGGTRRRRRRRFNF 68

Query: 73  APGQDPAVALRAGLDPAILRKIPVVAFNQQDFKDGLECAVCLSELEDGEKARLLPKCNHG 132
           A G      LR GLDP++L+ IPVV FN +DFKDGLEC+VCLSE+ +GE  R+LPKCNHG
Sbjct: 69  AGGYQEVNVLRRGLDPSVLKTIPVVPFNMKDFKDGLECSVCLSEVSEGENTRVLPKCNHG 128

Query: 133 FHVECIDMWFQSHSTCPLCRNPVDVERSNNGNGEPSVEIDIQNSQESLESGYSTDSPPNF 192
           FHV+CIDMWF SHSTCPLCRNPV          E S E   +    S+E G ++    N 
Sbjct: 129 FHVDCIDMWFHSHSTCPLCRNPVS---------EQSAESISETIGSSVEEGSASTETQNI 179

Query: 193 PTNVLFWGNENLVSSAGVCVHEGVSSSSSSSSSSSSTSSSSSEMNNSRRGAEMLVIDIPV 252
           PTNVLFWG+E                           +S++S  + S R   +LVIDI  
Sbjct: 180 PTNVLFWGDE---------------------------TSTTSSASTSNRPEGILVIDIAR 212

Query: 253 NSMSEHFSSLSPVEETKSPMTTRLRSLKRLLSREKRVSPCGTTGTSSSCDVEQVSRA 309
            +  +        E  K+P +TRLRSL RL S   RV+PC       + DVEQ SR+
Sbjct: 213 QNTEQE-----EEEGQKTPTSTRLRSLTRLFS---RVNPC-------NVDVEQGSRS 254

Source: Nicotiana tabacum

Species: Nicotiana tabacum

Genus: Nicotiana

Family: Solanaceae

Order: Solanales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449492548|ref|XP_004159030.1| PREDICTED: RING-H2 finger protein ATL60-like [Cucumis sativus]

 Score =  230 bits (587), Expect = 5e-58,   Method: Compositional matrix adjust.
 Identities = 143/297 (48%), Positives = 187/297 (62%), Gaps = 49/297 (16%)

Query: 11  FQNTGSLEITGQIMVIAIIVLFFVVVFILFLHLYAKWFWWRIEQTPEPSPSRRHRRRRRF 70
           F ++ ++E+TG+IM+ AI++L  V+ F+L L LY++WF  R+ Q+   S           
Sbjct: 12  FGDSIAMELTGKIMLAAILILCLVIAFVLLLQLYSRWFLSRLHQSSSDS----------- 60

Query: 71  VFAPGQDPAVA--LRAGLDPAILRKIPVVAFNQQDFKDGLECAVCLSELEDGEKARLLPK 128
             A  Q+  V+  LR GLD A+L  IPVV F+  DFK+GLECAVCLSEL +GEKARLLP+
Sbjct: 61  --ATNQESPVSTTLRKGLDSAVLHSIPVVVFSPADFKEGLECAVCLSELSEGEKARLLPR 118

Query: 129 CNHGFHVECIDMWFQSHSTCPLCRNPVDVERSNNGNGEPSVEIDIQNSQESLESGYSTDS 188
           CNHGFHV+CIDMWF+S+STCPLCRNPV +        EP       NS+++ E+G S +S
Sbjct: 119 CNHGFHVDCIDMWFKSNSTCPLCRNPVAIT-------EP-------NSEQNPETGSSMES 164

Query: 189 PPNFPTNVLFWGNENLVSSAGVCVHEGVSSSSSSSSSSSSTSSSSSEMNNSRRGAEMLVI 248
            P FPTNVLFWGN+  VSS GVC+ E           SSS+SS+SS +N       M+VI
Sbjct: 165 -PIFPTNVLFWGNQMQVSSRGVCLEE--------PQISSSSSSTSSSINT------MVVI 209

Query: 249 DIPVNSMSEHFSSLSPVEETKSPMTTRLRSLKRLLSREKRVSPCGTTGTSSSCDVEQ 305
           DIP    +    +    EE  S +T RLR+LKRLLSRE+R+   GT    S  D+EQ
Sbjct: 210 DIPNEPSTSGAGTCFADEEMGSVVTNRLRTLKRLLSRERRI---GTNPIPS--DIEQ 261

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	309
TAIR|locus:2197026	310	AT1G53820 [Arabidopsis thalian	0.721	0.719	0.450	6.4e-44
TAIR|locus:2193992	324	ATL3 [Arabidopsis thaliana (ta	0.822	0.783	0.358	4.4e-36
TAIR|locus:2090980	204	AT3G14320 [Arabidopsis thalian	0.372	0.563	0.495	1.2e-26
TAIR|locus:2089398	304	ATL2 "TOXICOS EN LEVADURA 2" [	0.485	0.493	0.375	6.6e-26
TAIR|locus:2081740	257	ATL5 "AtL5" [Arabidopsis thali	0.456	0.548	0.357	2.3e-22
UNIPROTKB|Q9LRB7	325	EL5.1 "E3 ubiquitin-protein li	0.236	0.224	0.547	9e-22
TAIR|locus:2061698	390	AT2G20030 [Arabidopsis thalian	0.317	0.251	0.464	3.6e-21
TAIR|locus:2140069	323	AT4G40070 [Arabidopsis thalian	0.288	0.275	0.462	1.2e-19
TAIR|locus:2151421	362	AT5G17600 [Arabidopsis thalian	0.352	0.301	0.407	6.1e-19
TAIR|locus:2062008	227	AT2G47560 [Arabidopsis thalian	0.226	0.308	0.547	8.3e-19

TAIR|locus:2197026 AT1G53820 [Arabidopsis thaliana (taxid:3702)]

 Score = 463 (168.0 bits), Expect = 6.4e-44, P = 6.4e-44
 Identities = 115/255 (45%), Positives = 146/255 (57%)

Query:    44 YAKWFWWRIEQ--------TPEPSPSXXXXX--XXXFVFAPGQDPAVALRAGLDPAILRK 93
             YA+ FWWR+EQ        + +P  +          FVFA  Q+  +   AGLD  IL+ 
Sbjct:    45 YARLFWWRVEQHFNLNLIQSDDPGSTVIGRNPRRRRFVFAQSQEDPLH-NAGLDSKILQS 103

Query:    94 IPVVAFNQQDFKDGLECAVCLSELEDGEKARLLPKCNHGFHVECIDMWFQSHSTCPLCRN 153
             I VV F   DFKDGLECAVCLS+L DG+KAR+LP+CNHGFHV+CIDMWFQSHSTCPLCRN
Sbjct:   104 IHVVVFKCTDFKDGLECAVCLSDLVDGDKARVLPRCNHGFHVDCIDMWFQSHSTCPLCRN 163

Query:   154 PV-DVERSNNGNGE--P---SVEIDIQNSQ------ESLESGYSTDSPPNFPTNVLFWGN 201
              V  VE + +G  E  P   + E     +Q      +S    +ST+ P +FPTNVL WG+
Sbjct:   164 TVGSVEDTTHGGSEGLPQNQNFESGHSTNQHNPSQDQSFVHEFSTE-PLSFPTNVLVWGD 222

Query:   202 ENLVSSAGVCVHEGVXXXXXXXXXXXXXXXXXXEMNNSRRGAEM--LVIDIPVNSMSEHF 259
             +N V SAG+ V E                    + ++S R  E+  +V+DIP NS SE+ 
Sbjct:   223 QNQVRSAGLVVTE-----ESPSGNFAASYNDHQQESSSTRSQEVTAVVVDIPDNS-SENL 276

Query:   260 SSLSPVEETKSPMTT 274
             S     EE KSPM T
Sbjct:   277 SERIDEEEPKSPMFT 291

GO:0005634 "nucleus" evidence=ISM

GO:0008270 "zinc ion binding" evidence=IEA;ISS

TAIR|locus:2193992 ATL3 [Arabidopsis thaliana (taxid:3702)]

 Score = 389 (142.0 bits), Expect = 4.4e-36, P = 4.4e-36
 Identities = 103/287 (35%), Positives = 133/287 (46%)

Query:    11 FQNTGSLEITGQIMXXXXXXXXXXXXXXXXXXXYAKWFWWRIEQTPEPS----------- 59
             F +  + E+T +I+                   YAK +WWRI+Q  +             
Sbjct:    12 FGDLSTEEVTSKIILTAIIVLFMAVLFVLILHLYAKLYWWRIDQLQQQQQQQQQEQEQEE 71

Query:    60 -------PSXXXXXXXXFVFAPGQDPAVALRAGLDPAILRKIPVVAFNQQDFKDGLECAV 112
                    P         F+F PGQD A++   GL    L  +P+V F Q   KDGLEC++
Sbjct:    72 DQSSIAPPVVTRRQRRRFIFVPGQD-ALS-NTGLTSFELSSLPIVFFRQDSCKDGLECSI 129

Query:   113 CLSELEDGEKARLLPKCNHGFHVECIDMWFQSHSTCPLCRNPV-DVERSNNGNGE--P-- 167
             CLSEL  G+KARLLPKCNH FHVECIDMWFQSHSTCP+CRN V   E++++   E  P  
Sbjct:   130 CLSELVKGDKARLLPKCNHSFHVECIDMWFQSHSTCPICRNTVLGPEQASSKRVEQVPDN 189

Query:   168 SVEIDIQNSQESLESGYSTDSPPNFPTNVLFWGNENLVSSAGVCVHEGVXXXXXXXXXXX 227
             +      N+     S  ST SP  FPTNVL WG ++ VS+    V               
Sbjct:   190 AENAGTTNNNHDALSQLSTSSP-EFPTNVLVWGRQDQVSTGNTNVGTQEDGAAGNGASQS 248

Query:   228 XXXXXXXEMNNSRRGAEMLVIDIPVNSMSEHFSSLSPVEETKSPMTT 274
                      ++S R          V+S S     +   EE KSPMTT
Sbjct:   249 QEAVVLDISDSSSRNHN-------VSSSSSSMRFIVEEEEAKSPMTT 288

GO:0005634 "nucleus" evidence=ISM

GO:0008270 "zinc ion binding" evidence=IEA;ISS

TAIR|locus:2090980 AT3G14320 [Arabidopsis thaliana (taxid:3702)]

 Score = 300 (110.7 bits), Expect = 1.2e-26, P = 1.2e-26
 Identities = 58/117 (49%), Positives = 75/117 (64%)

Query:    83 RAGLDPAILRKIPVVAFNQQDFKDGLECAVCLSELEDGEKARLLPKCNHGFHVECIDMWF 142
             R G+ P +LR IP+V FN +DFK  LEC VCLSEL DG+KAR+LP C+H FHVECID W 
Sbjct:    61 RVGIKPYVLRSIPIVDFNTKDFKYVLECVVCLSELADGDKARVLPSCDHWFHVECIDSWL 120

Query:   143 QSHSTCPLCRNPVDVERSNNGN--GEPSVEIDIQNSQESLESGYSTDSPPNFPTNVL 197
             QS+STCP+CR  V +++S      G      +  + Q S    +STD P N  T ++
Sbjct:   121 QSNSTCPICRKRVCLKQSRTRPELGGRDKSFNQNHDQTSEHHEFSTDPPTNTDTAII 177

GO:0008270 "zinc ion binding" evidence=IEA;ISS

TAIR|locus:2089398 ATL2 "TOXICOS EN LEVADURA 2" [Arabidopsis thaliana (taxid:3702)]

 Score = 293 (108.2 bits), Expect = 6.6e-26, P = 6.6e-26
 Identities = 57/152 (37%), Positives = 81/152 (53%)

Query:     7 DENGFQNTGSLEITGQIMXXXXXXXXXXXXXXXXXXXYAKWFWWRIEQTPEPSPSXXXXX 66
             ++N F  + +  ++G+IM                   YA+W+  R  +      S     
Sbjct:    14 EDNNFSGSKTYAMSGKIMLSAIVILFFVVILMVFLHLYARWYLLRARRRHLRRRSRNRRA 73

Query:    67 XXXFVFAPGQDPAVALRA--GLDPAILRKIPVVAFNQQDFKDGLECAVCLSELEDGEKAR 124
                F  A     A ++ A  GLDP +++ +PV  F+ +  KD +ECAVCLSE E+ E  R
Sbjct:    74 TMVFFTADPSTAATSVVASRGLDPNVIKSLPVFTFSDETHKDPIECAVCLSEFEESETGR 133

Query:   125 LLPKCNHGFHVECIDMWFQSHSTCPLCRNPVD 156
             +LP C H FHV+CIDMWF SHSTCPLCR+ V+
Sbjct:   134 VLPNCQHTFHVDCIDMWFHSHSTCPLCRSLVE 165

GO:0005634 "nucleus" evidence=ISM

GO:0008270 "zinc ion binding" evidence=IEA;ISS

GO:0006952 "defense response" evidence=IDA

GO:0010200 "response to chitin" evidence=IEP;RCA

GO:0000165 "MAPK cascade" evidence=RCA

GO:0002679 "respiratory burst involved in defense response" evidence=RCA

GO:0006612 "protein targeting to membrane" evidence=RCA

GO:0009595 "detection of biotic stimulus" evidence=RCA

GO:0009611 "response to wounding" evidence=RCA

GO:0009612 "response to mechanical stimulus" evidence=RCA

GO:0009697 "salicylic acid biosynthetic process" evidence=RCA

GO:0009814 "defense response, incompatible interaction" evidence=RCA

GO:0009862 "systemic acquired resistance, salicylic acid mediated signaling pathway" evidence=RCA

GO:0009867 "jasmonic acid mediated signaling pathway" evidence=RCA

GO:0010310 "regulation of hydrogen peroxide metabolic process" evidence=RCA

GO:0010363 "regulation of plant-type hypersensitive response" evidence=RCA

GO:0031348 "negative regulation of defense response" evidence=RCA

GO:0035556 "intracellular signal transduction" evidence=RCA

GO:0042742 "defense response to bacterium" evidence=RCA

GO:0043900 "regulation of multi-organism process" evidence=RCA

GO:0050832 "defense response to fungus" evidence=RCA

TAIR|locus:2081740 ATL5 "AtL5" [Arabidopsis thaliana (taxid:3702)]

 Score = 238 (88.8 bits), Expect = 2.3e-22, Sum P(2) = 2.3e-22
 Identities = 54/151 (35%), Positives = 76/151 (50%)

Query:    10 GFQNTGS--LEITGQIMXXXXXXXXXXXXXXXXXXXYAKWFWWRIEQTPEPSPSXXXXXX 67
             G  N GS    + G+IM                   YA+W + R  +      S      
Sbjct:    13 GNMNHGSSRYSLNGKIMLASVIILFVAVILILCFHSYARWLFRRQNRRIRRRISAHLRS- 71

Query:    68 XXFVFAPGQDPAVALRA--GLDPAILRKIPVVAFNQQDFKDGLE-CAVCLSELEDGEKAR 124
                  A  +DP  +  +   LDP +L KIP+  ++ +  +  LE C+VCLSE E+ ++ R
Sbjct:    72 ----LAAARDPTQSSSSLSPLDPTVLEKIPIFVYSVKTHESPLEECSVCLSEFEEDDEGR 127

Query:   125 LLPKCNHGFHVECIDMWFQSHSTCPLCRNPV 155
             +LPKC H FHV+CID WF+S S+CPLCR PV
Sbjct:   128 VLPKCGHVFHVDCIDTWFRSRSSCPLCRAPV 158

GO:0005634 "nucleus" evidence=ISM

GO:0008270 "zinc ion binding" evidence=IEA;ISS

GO:0006461 "protein complex assembly" evidence=TAS

GO:0016020 "membrane" evidence=ISS

UNIPROTKB|Q9LRB7 EL5.1 "E3 ubiquitin-protein ligase EL5" [Oryza sativa Japonica Group (taxid:39947)]

 Score = 254 (94.5 bits), Expect = 9.0e-22, P = 9.0e-22
 Identities = 46/84 (54%), Positives = 59/84 (70%)

Query:    85 GLDPAILRKIPVVAFN-----------QQDFKDGLECAVCLSELEDGEKARLLPKCNHGF 133
             G+DP +LR +PV  ++           +++  DG+ECAVCL+ELEDGE+AR LP+C HGF
Sbjct:    98 GVDPEVLRSLPVTVYSRSTAAAAAKEEEEEDDDGVECAVCLAELEDGEEARFLPRCGHGF 157

Query:   134 HVECIDMWFQSHSTCPLCRNPVDV 157
             H EC+DMW  SHSTCPLCR  V V
Sbjct:   158 HAECVDMWLGSHSTCPLCRLTVVV 181

GO:0004842 "ubiquitin-protein ligase activity" evidence=IDA

GO:0005886 "plasma membrane" evidence=IDA

GO:0016567 "protein ubiquitination" evidence=IDA

GO:0048364 "root development" evidence=IMP

GO:0051301 "cell division" evidence=IMP

TAIR|locus:2061698 AT2G20030 [Arabidopsis thaliana (taxid:3702)]

 Score = 250 (93.1 bits), Expect = 3.6e-21, P = 3.6e-21
 Identities = 46/99 (46%), Positives = 61/99 (61%)

Query:    84 AGLDPAILRKIPVVAFNQ-QDFKDGLECAVCLSELEDGEKARLLPKCNHGFHVECIDMWF 142
             +GLD   +  +P   F+  +  K GLEC+VCLS+ ED E  RLLPKC H FH+ CID W 
Sbjct:    97 SGLDKKAIESLPFFRFSALKGLKQGLECSVCLSKFEDVEILRLLPKCRHAFHIGCIDQWL 156

Query:   143 QSHSTCPLCRNPVDVERSNNGNGEPSVEIDIQNSQESLE 181
             + H+TCPLCRN V++E   +  G  S  + I N  E+ E
Sbjct:   157 EQHATCPLCRNRVNIEDDLSVLGNSSTSLRILNQSETRE 195

GO:0008270 "zinc ion binding" evidence=IEA;ISS

GO:0010043 "response to zinc ion" evidence=RCA

TAIR|locus:2140069 AT4G40070 [Arabidopsis thaliana (taxid:3702)]

 Score = 234 (87.4 bits), Expect = 1.2e-19, P = 1.2e-19
 Identities = 43/93 (46%), Positives = 62/93 (66%)

Query:    83 RAGLDPAILRKIPVVAFNQ-QDFKDG---LECAVCLSELEDGEKARLLPKCNHGFHVECI 138
             R GLD A++   PV A++  ++ K G   LECA+CL+ELED E  RLLP CNH FH++CI
Sbjct:    93 RGGLDNAVVESFPVFAYSSVKESKIGSKDLECAICLNELEDHETVRLLPICNHLFHIDCI 152

Query:   139 DMWFQSHSTCPLCRNPVDVERSNNGNGEPSVEI 171
             D W  SH+TCP+CR+ +  + +  G+ +  V +
Sbjct:   153 DTWLYSHATCPVCRSNLTAKSNKPGDEDDGVPL 185

GO:0005576 "extracellular region" evidence=ISM

GO:0008270 "zinc ion binding" evidence=IEA

TAIR|locus:2151421 AT5G17600 [Arabidopsis thaliana (taxid:3702)]

 Score = 229 (85.7 bits), Expect = 6.1e-19, P = 6.1e-19
 Identities = 46/113 (40%), Positives = 63/113 (55%)

Query:    85 GLDPAILRKIPVVAFNQQD-FKDGLECAVCLSELEDGEKARLLPKCNHGFHVECIDMWFQ 143
             GL+ ++++ I V  +   D F DG +C+VCLSE E+ E  RLLPKCNH FH+ CID W +
Sbjct:   116 GLNESMIKSITVYKYKSGDGFVDGSDCSVCLSEFEENESLRLLPKCNHAFHLPCIDTWLK 175

Query:   144 SHSTCPLCRNPVDVERSNNGNGEPSVEIDIQNSQESLESGYSTDSPPNFPTNV 196
             SHS CPLCR    V   NN        + +  + +S  S + T S      N+
Sbjct:   176 SHSNCPLCR--AFVTGVNNPTASVGQNVSVVVANQS-NSAHQTGSVSEINLNL 225

GO:0005634 "nucleus" evidence=ISM

GO:0008270 "zinc ion binding" evidence=IEA;ISS

TAIR|locus:2062008 AT2G47560 [Arabidopsis thaliana (taxid:3702)]

 Score = 226 (84.6 bits), Expect = 8.3e-19, P = 8.3e-19
 Identities = 40/73 (54%), Positives = 54/73 (73%)

Query:    86 LDPAILRKIPVVAFNQQDF---KDGLECAVCLSELEDGEKARLLPKCNHGFHVECIDMWF 142
             LD A+L KIP+  ++ ++    ++  EC+VCLSE E+ ++ RLLPKC H FHV+CID WF
Sbjct:    81 LDQAVLDKIPIFVYSSKNPPPPEEKEECSVCLSEFEEEDEGRLLPKCGHSFHVDCIDTWF 140

Query:   143 QSHSTCPLCRNPV 155
             +S STCPLCR PV
Sbjct:   141 RSRSTCPLCRAPV 153

GO:0005634 "nucleus" evidence=ISM

GO:0008270 "zinc ion binding" evidence=IEA;ISS

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
P0C035	ATL60_ARATH	No assigned EC number	0.4713	0.8381	0.8354	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	6.3.2	LOW CONFIDENCE prediction!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: GSVIVG00033989001 SubName- Full=Chromosome chr9 scaffold_7, whole genome shotgun sequence; (293 aa) (Vitis vinifera)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	309
pfam13639	46	pfam13639, zf-RING_2, Ring finger domain	3e-17
cd00162	45	cd00162, RING, RING-finger (Really Interesting New	6e-13
PHA02929	238	PHA02929, PHA02929, N1R/p28-like protein; Provisio	2e-11
pfam12678	73	pfam12678, zf-rbx1, RING-H2 zinc finger	4e-10
COG5540	374	COG5540, COG5540, RING-finger-containing ubiquitin	6e-10
pfam13923	45	pfam13923, zf-C3HC4_2, Zinc finger, C3HC4 type (RI	3e-08
smart00184	40	smart00184, RING, Ring finger	5e-08
COG5243	491	COG5243, HRD1, HRD ubiquitin ligase complex, ER me	3e-06
COG5194	88	COG5194, APC11, Component of SCF ubiquitin ligase	4e-06
pfam00097	40	pfam00097, zf-C3HC4, Zinc finger, C3HC4 type (RING	1e-05
COG5219	1525	COG5219, COG5219, Uncharacterized conserved protei	2e-05
pfam13920	49	pfam13920, zf-C3HC4_3, Zinc finger, C3HC4 type (RI	0.001
pfam12861	85	pfam12861, zf-Apc11, Anaphase-promoting complex su	0.002
PHA02926	242	PHA02926, PHA02926, zinc finger-like protein; Prov	0.002

>gnl|CDD|222279 pfam13639, zf-RING_2, Ring finger domain

 Score = 73.6 bits (181), Expect = 3e-17
 Identities = 26/46 (56%), Positives = 32/46 (69%), Gaps = 1/46 (2%)

Query: 109 ECAVCLSELEDGEKARLLPKCNHGFHVECIDMWFQSHSTCPLCRNP 154
           EC +CL E E GE+  +LP C H FH EC+D W +S +TCPLCR P
Sbjct: 2   ECPICLDEFEPGEEVVVLP-CGHVFHKECLDKWLRSSNTCPLCRAP 46

Length = 46

>gnl|CDD|238093 cd00162, RING, RING-finger (Really Interesting New Gene) domain, a specialized type of Zn-finger of 40 to 60 residues that binds two atoms of zinc; defined by the 'cross-brace' motif C-X2-C-X(9-39)-C-X(1-3)- H-X(2-3)-(N/C/H)-X2-C-X(4-48)C-X2-C; probably involved in mediating protein-protein interactions; identified in a proteins with a wide range of functions such as viral replication, signal transduction, and development; has two variants, the C3HC4-type and a C3H2C3-type (RING-H2 finger), which have different cysteine/histidine pattern; a subset of RINGs are associated with B-Boxes (C-X2-H-X7-C-X7-C-X2-C-H-X2-H)

 Score = 62.1 bits (151), Expect = 6e-13
 Identities = 21/48 (43%), Positives = 27/48 (56%), Gaps = 4/48 (8%)

Query: 109 ECAVCLSELEDGEKARLLPKCNHGFHVECIDMWFQS-HSTCPLCRNPV 155
           EC +CL E  +     +L  C H F   CID W +S  +TCPLCR P+
Sbjct: 1   ECPICLEEFRE---PVVLLPCGHVFCRSCIDKWLKSGKNTCPLCRTPI 45

Length = 45

>gnl|CDD|222944 PHA02929, PHA02929, N1R/p28-like protein; Provisional

 Score = 62.1 bits (151), Expect = 2e-11
 Identities = 27/71 (38%), Positives = 40/71 (56%), Gaps = 7/71 (9%)

Query: 91  LRKIPVVAFNQQDFKD---GLECAVCLSELEDGE-KAR---LLPKCNHGFHVECIDMWFQ 143
           L+ IP V    +   +     ECA+C+ ++ D E K     +L  CNH F +ECID+W +
Sbjct: 155 LKTIPSVLSEYEKLYNRSKDKECAICMEKVYDKEIKNMYFGILSNCNHVFCIECIDIWKK 214

Query: 144 SHSTCPLCRNP 154
             +TCP+CR P
Sbjct: 215 EKNTCPVCRTP 225

Length = 238

>gnl|CDD|221705 pfam12678, zf-rbx1, RING-H2 zinc finger

 Score = 54.7 bits (132), Expect = 4e-10
 Identities = 22/71 (30%), Positives = 35/71 (49%), Gaps = 10/71 (14%)

Query: 91  LRKIPVVAFNQQDFKDGLECAVCLSELED--------GEKARL-LPKCNHGFHVECIDMW 141
           ++K   VA    D +D   CA+C +  +         G+   +   +C H FH+ CI  W
Sbjct: 4   IKKWNAVALWSWDIEDD-VCAICRNHFDGTCPECKSPGDDCPVVWGECGHAFHLHCISRW 62

Query: 142 FQSHSTCPLCR 152
            ++ +TCPLCR
Sbjct: 63  LKTRNTCPLCR 73

There are 8 cysteine/ histidine residues which are proposed to be the conserved residues involved in zinc binding. The protein, of which this domain is the conserved region, participates in diverse functions relevant to chromosome metabolism and cell cycle control. Length = 73

>gnl|CDD|227827 COG5540, COG5540, RING-finger-containing ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

 Score = 59.2 bits (143), Expect = 6e-10
 Identities = 22/50 (44%), Positives = 33/50 (66%), Gaps = 2/50 (4%)

Query: 107 GLECAVCLSELEDGEKARLLPKCNHGFHVECIDMWFQSHS-TCPLCRNPV 155
           G+ECA+C+S     ++ R+LP C+H FHV C+D W   +S  CP+CR  +
Sbjct: 323 GVECAICMSNFIKNDRLRVLP-CDHRFHVGCVDKWLLGYSNKCPVCRTAI 371

Length = 374

>gnl|CDD|206094 pfam13923, zf-C3HC4_2, Zinc finger, C3HC4 type (RING finger)

 Score = 49.0 bits (117), Expect = 3e-08
 Identities = 19/47 (40%), Positives = 25/47 (53%), Gaps = 3/47 (6%)

Query: 106 DGLECAVCLSELEDGEKARLLPKCNHGFHVECIDMWFQSHSTCPLCR 152
           + LEC +CL  L D     +L  C H F  ECI  + +  S CP+CR
Sbjct: 1   EELECPICLDLLRD---PVVLTPCGHVFCRECILRYLKKKSKCPICR 44

Length = 45

>gnl|CDD|214546 smart00184, RING, Ring finger

 Score = 48.3 bits (115), Expect = 5e-08
 Identities = 17/43 (39%), Positives = 23/43 (53%), Gaps = 4/43 (9%)

Query: 110 CAVCLSELEDGEKARLLPKCNHGFHVECIDMWFQSHS-TCPLC 151
           C +CL E    +   +LP C H F   CI  W +S + TCP+C
Sbjct: 1   CPICLEEYL--KDPVILP-CGHTFCRSCIRKWLESGNNTCPIC 40

E3 ubiquitin-protein ligase activity is intrinsic to the RING domain of c-Cbl and is likely to be a general function of this domain; Various RING fingers exhibit binding activity towards E2 ubiquitin-conjugating enzymes (Ubc' s). Length = 40

>gnl|CDD|227568 COG5243, HRD1, HRD ubiquitin ligase complex, ER membrane component [Posttranslational modification, protein turnover, chaperones]

 Score = 48.0 bits (114), Expect = 3e-06
 Identities = 23/86 (26%), Positives = 35/86 (40%), Gaps = 12/86 (13%)

Query: 94  IPVVAFNQQDFKDGLECAVCLSEL----------EDGEKARLLPKCNHGFHVECIDMWFQ 143
            P     Q    D   C +C+ E+                + LP C H  H+ C+  W +
Sbjct: 275 YPTATEEQLTNSDRT-CTICMDEMFHPDHEPLPRGLDMTPKRLP-CGHILHLHCLKNWLE 332

Query: 144 SHSTCPLCRNPVDVERSNNGNGEPSV 169
              TCP+CR PV  ++S+     P+V
Sbjct: 333 RQQTCPICRRPVIFDQSSPTPASPNV 358

Length = 491

>gnl|CDD|227521 COG5194, APC11, Component of SCF ubiquitin ligase and anaphase-promoting complex [Posttranslational modification, protein turnover, chaperones / Cell division and chromosome partitioning]

 Score = 44.1 bits (104), Expect = 4e-06
 Identities = 12/35 (34%), Positives = 14/35 (40%)

Query: 128 KCNHGFHVECIDMWFQSHSTCPLCRNPVDVERSNN 162
            CNH FH  CI  W  +   CPL R    +     
Sbjct: 53  VCNHAFHDHCIYRWLDTKGVCPLDRQTWVLADGGA 87

Length = 88

>gnl|CDD|215715 pfam00097, zf-C3HC4, Zinc finger, C3HC4 type (RING finger)

 Score = 40.9 bits (96), Expect = 1e-05
 Identities = 19/43 (44%), Positives = 25/43 (58%), Gaps = 4/43 (9%)

Query: 110 CAVCLSELEDGEKARLLPKCNHGFHVECIDMWFQS-HSTCPLC 151
           C +CL E +D     +LP C H F  +CI  W +S + TCPLC
Sbjct: 1   CPICLEEPKD--PVTILP-CGHLFCSKCILSWLESGNVTCPLC 40

The C3HC4 type zinc-finger (RING finger) is a cysteine-rich domain of 40 to 60 residues that coordinates two zinc ions, and has the consensus sequence: C-X2-C-X(9-39)-C-X(1-3)-H-X(2-3)-C-X2-C-X(4-48)-C-X2-C where X is any amino acid. Many proteins containing a RING finger play a key role in the ubiquitination pathway. Length = 40

>gnl|CDD|227544 COG5219, COG5219, Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]

 Score = 46.2 bits (109), Expect = 2e-05
 Identities = 19/49 (38%), Positives = 27/49 (55%), Gaps = 5/49 (10%)

Query: 109  ECAVCLSELEDGEK---ARLLPKCNHGFHVECIDMWFQS--HSTCPLCR 152
            ECA+C S L+  ++   ++    C + FH  C+  WF S   S CPLCR
Sbjct: 1471 ECAICYSVLDMVDRSLPSKRCATCKNKFHTRCLYKWFASSARSNCPLCR 1519

Length = 1525

>gnl|CDD|222454 pfam13920, zf-C3HC4_3, Zinc finger, C3HC4 type (RING finger)

 Score = 35.8 bits (83), Expect = 0.001
 Identities = 15/52 (28%), Positives = 22/52 (42%), Gaps = 6/52 (11%)

Query: 106 DGLECAVCLSELEDGEKARLLPKCNH-GFHVECIDMWFQSHSTCPLCRNPVD 156
           +   C +CL    +      LP C H     EC     +S   CP+CR P++
Sbjct: 1   EDDLCVICLERPRN---VVFLP-CGHLCLCEECAKRL-RSKKKCPICRQPIE 47

Length = 49

>gnl|CDD|193335 pfam12861, zf-Apc11, Anaphase-promoting complex subunit 11 RING-H2 finger

 Score = 36.7 bits (85), Expect = 0.002
 Identities = 12/31 (38%), Positives = 18/31 (58%), Gaps = 3/31 (9%)

Query: 125 LLPKCNHGFHVECIDMWFQSHST---CPLCR 152
           +  KC H FH+ CI  W  + ++   CP+CR
Sbjct: 48  VWGKCKHNFHMHCILKWLATETSKGLCPMCR 78

Apc11 is one of the subunits of the anaphase-promoting complex or cyclosome. The APC subunits are cullin family proteins with ubiquitin ligase activity. Polyubiquitination marks proteins for degradation by the 26S proteasome and is carried out by a cascade of enzymes that includes ubiquitin-activating enzymes (E1s), ubiquitin-conjugating enzymes (E2s), and ubiquitin ligases (E3s). Apc11 acts as an E3 enzyme and is responsible for recruiting E2s to the APC and for mediating the subsequent transfer of ubiquitin to APC substrates in vivo. In Saccharomyces cerevisiae this RING-H2 finger protein defines the minimal ubiquitin ligase activity of the APC, and the integrity of the RING-H2 finger is essential for budding yeast cell viability. Length = 85

>gnl|CDD|165237 PHA02926, PHA02926, zinc finger-like protein; Provisional

 Score = 38.9 bits (90), Expect = 0.002
 Identities = 18/55 (32%), Positives = 26/55 (47%), Gaps = 11/55 (20%)

Query: 109 ECAVCLS-----ELEDGEKARLLPKCNHGFHVECIDMWFQSH------STCPLCR 152
           EC +C        LE+     LL  CNH F + CI++W ++         CP+CR
Sbjct: 172 ECGICYEVVYSKRLENDRYFGLLDSCNHIFCITCINIWHRTRRETGASDNCPICR 226

Length = 242

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	309
KOG4628	348	consensus Predicted E3 ubiquitin ligase [Posttrans	99.75
PF13639	44	zf-RING_2: Ring finger domain; PDB: 2KIZ_A 4EPO_C	99.5
COG5243	491	HRD1 HRD ubiquitin ligase complex, ER membrane com	99.49
PHA02929	238	N1R/p28-like protein; Provisional	99.27
PF12678	73	zf-rbx1: RING-H2 zinc finger; InterPro: IPR024766	99.26
COG5540	374	RING-finger-containing ubiquitin ligase [Posttrans	99.23
KOG0317	293	consensus Predicted E3 ubiquitin ligase, integral	99.05
PF12861	85	zf-Apc11: Anaphase-promoting complex subunit 11 RI	98.99
KOG0823	230	consensus Predicted E3 ubiquitin ligase [Posttrans	98.97
PLN03208	193	E3 ubiquitin-protein ligase RMA2; Provisional	98.94
cd00162	45	RING RING-finger (Really Interesting New Gene) dom	98.93
PF13920	50	zf-C3HC4_3: Zinc finger, C3HC4 type (RING finger);	98.91
KOG0802	543	consensus E3 ubiquitin ligase [Posttranslational m	98.84
PF13923	39	zf-C3HC4_2: Zinc finger, C3HC4 type (RING finger);	98.84
COG5194	88	APC11 Component of SCF ubiquitin ligase and anapha	98.74
PHA02926	242	zinc finger-like protein; Provisional	98.71
PF14634	44	zf-RING_5: zinc-RING finger domain	98.67
KOG0320	187	consensus Predicted E3 ubiquitin ligase [Posttrans	98.63
PF00097	41	zf-C3HC4: Zinc finger, C3HC4 type (RING finger); I	98.62
smart00184	39	RING Ring finger. E3 ubiquitin-protein ligase acti	98.61
KOG3970	299	consensus Predicted E3 ubiquitin ligase [Posttrans	98.6
KOG1493	84	consensus Anaphase-promoting complex (APC), subuni	98.59
PF15227	42	zf-C3HC4_4: zinc finger of C3HC4-type, RING; PDB:	98.55
smart00504	63	Ubox Modified RING finger domain. Modified RING fi	98.54
TIGR00599	397	rad18 DNA repair protein rad18. This family is bas	98.51
COG5574	271	PEX10 RING-finger-containing E3 ubiquitin ligase [	98.4
KOG1734	328	consensus Predicted RING-containing E3 ubiquitin l	98.39
KOG0828	636	consensus Predicted E3 ubiquitin ligase [Posttrans	98.29
PF11793	70	FANCL_C: FANCL C-terminal domain; PDB: 3K1L_A.	98.27
smart00744	49	RINGv The RING-variant domain is a C4HC3 zinc-fing	98.24
COG5219	1525	Uncharacterized conserved protein, contains RING Z	98.23
KOG2930	114	consensus SCF ubiquitin ligase, Rbx1 component [Po	98.15
KOG2164	513	consensus Predicted E3 ubiquitin ligase [Posttrans	98.14
KOG0287	442	consensus Postreplication repair protein RAD18 [Re	98.09
PF13445	43	zf-RING_UBOX: RING-type zinc-finger; PDB: 2CT2_A.	98.05
COG5432	391	RAD18 RING-finger-containing E3 ubiquitin ligase [	97.99
PF04564	73	U-box: U-box domain; InterPro: IPR003613 Quality c	97.99
KOG4265	349	consensus Predicted E3 ubiquitin ligase [Posttrans	97.94
TIGR00570	309	cdk7 CDK-activating kinase assembly factor MAT1. A	97.91
KOG0804	493	consensus Cytoplasmic Zn-finger protein BRAP2 (BRC	97.89
KOG2177	386	consensus Predicted E3 ubiquitin ligase [Posttrans	97.87
KOG4172	62	consensus Predicted E3 ubiquitin ligase [Posttrans	97.83
KOG0827	465	consensus Predicted E3 ubiquitin ligase [Posttrans	97.76
KOG0311	381	consensus Predicted E3 ubiquitin ligase [Posttrans	97.62
KOG4445	368	consensus Uncharacterized conserved protein, conta	97.58
PF14835	65	zf-RING_6: zf-RING of BARD1-type protein; PDB: 1JM	97.52
KOG0825	1134	consensus PHD Zn-finger protein [General function	97.51
KOG1645	463	consensus RING-finger-containing E3 ubiquitin liga	97.51
KOG1039	344	consensus Predicted E3 ubiquitin ligase [Posttrans	97.42
KOG0824	324	consensus Predicted E3 ubiquitin ligase [Posttrans	97.35
KOG1785	563	consensus Tyrosine kinase negative regulator CBL [	97.25
KOG1941	518	consensus Acetylcholine receptor-associated protei	97.23
KOG0978	698	consensus E3 ubiquitin ligase involved in syntaxin	97.11
PF05883	134	Baculo_RING: Baculovirus U-box/Ring-like domain; I	96.86
KOG0801	205	consensus Predicted E3 ubiquitin ligase [Posttrans	96.67
KOG2660	331	consensus Locus-specific chromosome binding protei	96.65
KOG0826	357	consensus Predicted E3 ubiquitin ligase involved i	96.62
KOG1952	950	consensus Transcription factor NF-X1, contains NFX	96.59
KOG4159	398	consensus Predicted E3 ubiquitin ligase [Posttrans	96.58
PF11789	57	zf-Nse: Zinc-finger of the MIZ type in Nse subunit	96.56
KOG0297	391	consensus TNF receptor-associated factor [Signal t	96.56
PHA02825	162	LAP/PHD finger-like protein; Provisional	96.48
PHA02862	156	5L protein; Provisional	96.43
PF12906	47	RINGv: RING-variant domain; PDB: 2D8S_A 1VYX_A.	96.35
KOG1428	3738	consensus Inhibitor of type V adenylyl cyclases/Ne	96.34
PF14570	48	zf-RING_4: RING/Ubox like zinc-binding domain; PDB	96.24
KOG2879	298	consensus Predicted E3 ubiquitin ligase [Posttrans	96.15
KOG1002	791	consensus Nucleotide excision repair protein RAD16	96.14
KOG3268	234	consensus Predicted E3 ubiquitin ligase [Posttrans	95.86
KOG1814	445	consensus Predicted E3 ubiquitin ligase [Posttrans	95.79
PF10367	109	Vps39_2: Vacuolar sorting protein 39 domain 2; Int	95.77
KOG3039	303	consensus Uncharacterized conserved protein [Funct	95.48
KOG1571	355	consensus Predicted E3 ubiquitin ligase [Posttrans	95.47
COG5222	427	Uncharacterized conserved protein, contains RING Z	95.46
COG5152	259	Uncharacterized conserved protein, contains RING a	95.32
PHA03096	284	p28-like protein; Provisional	95.26
KOG4692	489	consensus Predicted E3 ubiquitin ligase [Posttrans	94.95
COG5175	480	MOT2 Transcriptional repressor [Transcription]	94.38
KOG0827	465	consensus Predicted E3 ubiquitin ligase [Posttrans	94.29
KOG1813	313	consensus Predicted E3 ubiquitin ligase [Posttrans	94.26
PF08746	43	zf-RING-like: RING-like domain; InterPro: IPR01485	94.21
KOG4739	233	consensus Uncharacterized protein involved in syna	94.2
KOG2034	911	consensus Vacuolar sorting protein PEP3/VPS18 [Int	94.19
KOG2114	933	consensus Vacuolar assembly/sorting protein PEP5/V	94.09
PF04641	260	Rtf2: Rtf2 RING-finger	93.83
KOG4185	296	consensus Predicted E3 ubiquitin ligase [Posttrans	93.77
KOG4275	350	consensus Predicted E3 ubiquitin ligase [Posttrans	93.71
PF14446	54	Prok-RING_1: Prokaryotic RING finger family 1	93.55
KOG1940	276	consensus Zn-finger protein [General function pred	93.34
KOG0309	1081	consensus Conserved WD40 repeat-containing protein	93.03
COG5236	493	Uncharacterized conserved protein, contains RING Z	92.27
KOG2932	389	consensus E3 ubiquitin ligase involved in ubiquiti	91.64
PF14447	55	Prok-RING_4: Prokaryotic RING finger family 4	91.38
KOG1001	674	consensus Helicase-like transcription factor HLTF/	91.35
PF07800	162	DUF1644: Protein of unknown function (DUF1644); In	91.34
PF10272	358	Tmpp129: Putative transmembrane protein precursor;	91.12
KOG2817	394	consensus Predicted E3 ubiquitin ligase [Posttrans	90.8
COG5183	1175	SSM4 Protein involved in mRNA turnover and stabili	90.68
KOG1100	207	consensus Predicted E3 ubiquitin ligase [Posttrans	90.62
KOG1609	323	consensus Protein involved in mRNA turnover and st	90.3
KOG3053	293	consensus Uncharacterized conserved protein [Funct	89.7
COG5220	314	TFB3 Cdk activating kinase (CAK)/RNA polymerase II	89.33
KOG3800	300	consensus Predicted E3 ubiquitin ligase containing	89.05
KOG0298	1394	consensus DEAD box-containing helicase-like transc	88.92
KOG0802	543	consensus E3 ubiquitin ligase [Posttranslational m	88.39
KOG3002	299	consensus Zn finger protein [General function pred	86.72
KOG3161	861	consensus Predicted E3 ubiquitin ligase [Posttrans	86.0
PF02439	38	Adeno_E3_CR2: Adenovirus E3 region protein CR2; In	85.75
PF03854	50	zf-P11: P-11 zinc finger; InterPro: IPR003224 Zinc	85.08
PF15050	133	SCIMP: SCIMP protein	84.14
KOG1812	384	consensus Predicted E3 ubiquitin ligase [Posttrans	83.39
PF13901	202	DUF4206: Domain of unknown function (DUF4206)	82.38
KOG3899	381	consensus Uncharacterized conserved protein [Funct	81.48
KOG0825	1134	consensus PHD Zn-finger protein [General function	81.18
PF07975	51	C1_4: TFIIH C1-like domain; InterPro: IPR004595 Al	80.41
KOG3005	276	consensus GIY-YIG type nuclease [General function	80.26

>KOG4628 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=99.75  E-value=3e-18  Score=162.37  Aligned_cols=76  Identities=41%  Similarity=0.940  Sum_probs=65.9

Q ss_pred             cCCCHHHHhcCCceeeccCCCCCC-ceecccccccccCcceeecCCCCCccchhHHHHHHhcCCC-CcccCcccccCCC
Q 021708           84 AGLDPAILRKIPVVAFNQQDFKDG-LECAVCLSELEDGEKARLLPKCNHGFHVECIDMWFQSHST-CPLCRNPVDVERS  160 (309)
Q Consensus        84 ~g~~~~~~~~lp~~~~~~~~~~~~-~~C~ICl~~~~~~~~~~~lp~C~H~FH~~Ci~~Wl~~~~~-CP~CR~~i~~~~~  160 (309)
                      ..+.+..++++|..+|...+.++. +.|+||||+|..||++|.|| |+|.||..||++||..+.+ ||+|++++....+
T Consensus       205 ~r~~k~~l~~~p~~~f~~~~~~~~~~~CaIClEdY~~GdklRiLP-C~H~FH~~CIDpWL~~~r~~CPvCK~di~~~~~  282 (348)
T KOG4628|consen  205 NRLIKRLLKKLPVRTFTKGDDEDATDTCAICLEDYEKGDKLRILP-CSHKFHVNCIDPWLTQTRTFCPVCKRDIRTDSG  282 (348)
T ss_pred             hhhHHHHHhhCCcEEeccccccCCCceEEEeecccccCCeeeEec-CCCchhhccchhhHhhcCccCCCCCCcCCCCCC
Confidence            467788999999999998765543 58999999999999999999 9999999999999977654 9999998875543

>PF13639 zf-RING_2: Ring finger domain; PDB: 2KIZ_A 4EPO_C 1IYM_A 2EP4_A 2ECT_A 2JRJ_A 2ECN_A 2ECM_A 3NG2_A 2EA6_A

Probab=99.50  E-value=6e-15  Score=100.22  Aligned_cols=44  Identities=52%  Similarity=1.234  Sum_probs=40.1

Q ss_pred             ceecccccccccCcceeecCCCCCccchhHHHHHHhcCCCCcccC
Q 021708          108 LECAVCLSELEDGEKARLLPKCNHGFHVECIDMWFQSHSTCPLCR  152 (309)
Q Consensus       108 ~~C~ICl~~~~~~~~~~~lp~C~H~FH~~Ci~~Wl~~~~~CP~CR  152 (309)
                      ++|+||+++|..++.+..++ |+|.||.+||..|++.+.+||+||
T Consensus         1 d~C~IC~~~~~~~~~~~~l~-C~H~fh~~Ci~~~~~~~~~CP~CR   44 (44)
T PF13639_consen    1 DECPICLEEFEDGEKVVKLP-CGHVFHRSCIKEWLKRNNSCPVCR   44 (44)
T ss_dssp             -CETTTTCBHHTTSCEEEET-TSEEEEHHHHHHHHHHSSB-TTTH
T ss_pred             CCCcCCChhhcCCCeEEEcc-CCCeeCHHHHHHHHHhCCcCCccC
Confidence            36999999999889999998 999999999999999999999997

...

>COG5243 HRD1 HRD ubiquitin ligase complex, ER membrane component [Posttranslational modification, protein turnover, chaperones]

Probab=99.49  E-value=4.3e-14  Score=133.16  Aligned_cols=55  Identities=31%  Similarity=0.916  Sum_probs=44.9

Q ss_pred             CCCCceeccccccc-ccC---------cceeecCCCCCccchhHHHHHHhcCCCCcccCcccccCC
Q 021708          104 FKDGLECAVCLSEL-EDG---------EKARLLPKCNHGFHVECIDMWFQSHSTCPLCRNPVDVER  159 (309)
Q Consensus       104 ~~~~~~C~ICl~~~-~~~---------~~~~~lp~C~H~FH~~Ci~~Wl~~~~~CP~CR~~i~~~~  159 (309)
                      ..++..|.||++++ ..+         .+.+.|| |||+||-+|++.|++++++||.||.++..+.
T Consensus       284 ~n~D~~C~ICmde~~h~~~~~~~~~~~~~pKrLp-CGHilHl~CLknW~ERqQTCPICr~p~ifd~  348 (491)
T COG5243         284 TNSDRTCTICMDEMFHPDHEPLPRGLDMTPKRLP-CGHILHLHCLKNWLERQQTCPICRRPVIFDQ  348 (491)
T ss_pred             cCCCCeEEEecccccCCCCccCcccccCCccccc-ccceeeHHHHHHHHHhccCCCcccCcccccc
Confidence            34567899999995 433         2457888 9999999999999999999999999954433

>PHA02929 N1R/p28-like protein; Provisional

Probab=99.27  E-value=2.8e-12  Score=116.81  Aligned_cols=73  Identities=36%  Similarity=0.747  Sum_probs=57.1

Q ss_pred             cCCCHHHHhcCCceeeccCC---CCCCceecccccccccCcc----eeecCCCCCccchhHHHHHHhcCCCCcccCcccc
Q 021708           84 AGLDPAILRKIPVVAFNQQD---FKDGLECAVCLSELEDGEK----ARLLPKCNHGFHVECIDMWFQSHSTCPLCRNPVD  156 (309)
Q Consensus        84 ~g~~~~~~~~lp~~~~~~~~---~~~~~~C~ICl~~~~~~~~----~~~lp~C~H~FH~~Ci~~Wl~~~~~CP~CR~~i~  156 (309)
                      .+..+..+..+|.+..+-+.   ...+.+|+||++++.+++.    +.+++.|+|.||..||..|+..+.+||+||..+.
T Consensus       148 ~~~~~~~i~~lp~vl~~~e~~~~~~~~~eC~ICle~~~~~~~~~~~~~vl~~C~H~FC~~CI~~Wl~~~~tCPlCR~~~~  227 (238)
T PHA02929        148 GKNYKKFLKTIPSVLSEYEKLYNRSKDKECAICMEKVYDKEIKNMYFGILSNCNHVFCIECIDIWKKEKNTCPVCRTPFI  227 (238)
T ss_pred             cchhHHHHHhcchhhhhhhhhhcCCCCCCCccCCcccccCccccccceecCCCCCcccHHHHHHHHhcCCCCCCCCCEee
Confidence            55678889999988755433   2346789999999876542    2344459999999999999999999999999875

>PF12678 zf-rbx1: RING-H2 zinc finger; InterPro: IPR024766 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=99.26  E-value=2.2e-12  Score=97.23  Aligned_cols=45  Identities=44%  Similarity=0.998  Sum_probs=34.7

Q ss_pred             ceecccccccccC---------cceeecCCCCCccchhHHHHHHhcCCCCcccC
Q 021708          108 LECAVCLSELEDG---------EKARLLPKCNHGFHVECIDMWFQSHSTCPLCR  152 (309)
Q Consensus       108 ~~C~ICl~~~~~~---------~~~~~lp~C~H~FH~~Ci~~Wl~~~~~CP~CR  152 (309)
                      +.|+||+++|.+.         +....+..|||.||..||.+||..+.+||+||
T Consensus        20 d~C~IC~~~l~~~~~~~~~~~~~~~i~~~~C~H~FH~~Ci~~Wl~~~~~CP~CR   73 (73)
T PF12678_consen   20 DNCAICREPLEDPCPECQAPQDECPIVWGPCGHIFHFHCISQWLKQNNTCPLCR   73 (73)
T ss_dssp             SBETTTTSBTTSTTCCHHHCTTTS-EEEETTSEEEEHHHHHHHHTTSSB-TTSS
T ss_pred             CcccccChhhhChhhhhcCCccccceEecccCCCEEHHHHHHHHhcCCcCCCCC
Confidence            4599999999421         22333334999999999999999999999998

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This domain constitutes a conserved region found in proteins that participate in diverse functions relevant to chromosome metabolism and cell cycle control [].The domain contains 8 cysteine/ histidine residues which are proposed to be the conserved residues involved in zinc binding.; PDB: 4A0C_D 4A0L_I 4A0K_B 2ECL_A 1LDK_C 3RTR_F 3DQV_Y 1U6G_B 1LDJ_B 2HYE_D ....

>COG5540 RING-finger-containing ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=99.23  E-value=5.2e-12  Score=116.57  Aligned_cols=51  Identities=41%  Similarity=1.148  Sum_probs=46.1

Q ss_pred             CCceecccccccccCcceeecCCCCCccchhHHHHHHhc-CCCCcccCccccc
Q 021708          106 DGLECAVCLSELEDGEKARLLPKCNHGFHVECIDMWFQS-HSTCPLCRNPVDV  157 (309)
Q Consensus       106 ~~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~Ci~~Wl~~-~~~CP~CR~~i~~  157 (309)
                      .+.+|+|||++|..++.++.+| |+|.||..|+++|+.. +..||+||..|.+
T Consensus       322 ~GveCaICms~fiK~d~~~vlP-C~H~FH~~Cv~kW~~~y~~~CPvCrt~iPP  373 (374)
T COG5540         322 KGVECAICMSNFIKNDRLRVLP-CDHRFHVGCVDKWLLGYSNKCPVCRTAIPP  373 (374)
T ss_pred             CCceEEEEhhhhcccceEEEec-cCceechhHHHHHHhhhcccCCccCCCCCC
Confidence            3578999999999999999999 9999999999999985 5679999998864

>KOG0317 consensus Predicted E3 ubiquitin ligase, integral peroxisomal membrane protein [Posttranslational modification, protein turnover, chaperones]

Probab=99.05  E-value=2.4e-10  Score=105.26  Aligned_cols=51  Identities=29%  Similarity=0.774  Sum_probs=43.0

Q ss_pred             CCCceecccccccccCcceeecCCCCCccchhHHHHHHhcCCCCcccCcccccCC
Q 021708          105 KDGLECAVCLSELEDGEKARLLPKCNHGFHVECIDMWFQSHSTCPLCRNPVDVER  159 (309)
Q Consensus       105 ~~~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~Ci~~Wl~~~~~CP~CR~~i~~~~  159 (309)
                      +....|.+||+....   .--+| |||+|||.||..|...+..||+||....+.+
T Consensus       237 ~a~~kC~LCLe~~~~---pSaTp-CGHiFCWsCI~~w~~ek~eCPlCR~~~~psk  287 (293)
T KOG0317|consen  237 EATRKCSLCLENRSN---PSATP-CGHIFCWSCILEWCSEKAECPLCREKFQPSK  287 (293)
T ss_pred             CCCCceEEEecCCCC---CCcCc-CcchHHHHHHHHHHccccCCCcccccCCCcc
Confidence            345789999999765   45677 9999999999999999999999998876543

>PF12861 zf-Apc11: Anaphase-promoting complex subunit 11 RING-H2 finger

Probab=98.99  E-value=3e-10  Score=87.25  Aligned_cols=54  Identities=28%  Similarity=0.811  Sum_probs=41.6

Q ss_pred             CCCCceeccccccccc---------CcceeecCCCCCccchhHHHHHHhc---CCCCcccCccccc
Q 021708          104 FKDGLECAVCLSELED---------GEKARLLPKCNHGFHVECIDMWFQS---HSTCPLCRNPVDV  157 (309)
Q Consensus       104 ~~~~~~C~ICl~~~~~---------~~~~~~lp~C~H~FH~~Ci~~Wl~~---~~~CP~CR~~i~~  157 (309)
                      ..+++.|.||...|..         ++...++.+|+|.||.+||.+||..   +..||+||+....
T Consensus        18 ~~~dd~CgICr~~fdg~Cp~Ck~Pgd~Cplv~g~C~H~FH~hCI~kWl~~~~~~~~CPmCR~~w~~   83 (85)
T PF12861_consen   18 VANDDVCGICRMPFDGCCPDCKFPGDDCPLVWGKCSHNFHMHCILKWLSTQSSKGQCPMCRQPWKF   83 (85)
T ss_pred             cCCCCceeeEecccccCCCCccCCCCCCceeeccCccHHHHHHHHHHHccccCCCCCCCcCCeeee
Confidence            3447789999999872         2223455569999999999999965   5679999998754

>KOG0823 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=98.97  E-value=5.2e-10  Score=100.25  Aligned_cols=52  Identities=25%  Similarity=0.744  Sum_probs=40.8

Q ss_pred             CCCceecccccccccCcceeecCCCCCccchhHHHHHHhc---CCCCcccCcccccCCC
Q 021708          105 KDGLECAVCLSELEDGEKARLLPKCNHGFHVECIDMWFQS---HSTCPLCRNPVDVERS  160 (309)
Q Consensus       105 ~~~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~Ci~~Wl~~---~~~CP~CR~~i~~~~~  160 (309)
                      ....+|.|||+.-+  |.| +.. |||+|||.||.+||..   .+.||+|+..|..+.-
T Consensus        45 ~~~FdCNICLd~ak--dPV-vTl-CGHLFCWpClyqWl~~~~~~~~cPVCK~~Vs~~~v   99 (230)
T KOG0823|consen   45 GGFFDCNICLDLAK--DPV-VTL-CGHLFCWPCLYQWLQTRPNSKECPVCKAEVSIDTV   99 (230)
T ss_pred             CCceeeeeeccccC--CCE-Eee-cccceehHHHHHHHhhcCCCeeCCccccccccceE
Confidence            34578999999844  344 444 9999999999999965   3459999999987664

>PLN03208 E3 ubiquitin-protein ligase RMA2; Provisional

Probab=98.94  E-value=8.5e-10  Score=97.10  Aligned_cols=51  Identities=27%  Similarity=0.769  Sum_probs=40.7

Q ss_pred             CCCceecccccccccCcceeecCCCCCccchhHHHHHHhc----------------CCCCcccCcccccCC
Q 021708          105 KDGLECAVCLSELEDGEKARLLPKCNHGFHVECIDMWFQS----------------HSTCPLCRNPVDVER  159 (309)
Q Consensus       105 ~~~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~Ci~~Wl~~----------------~~~CP~CR~~i~~~~  159 (309)
                      .++.+|+||++.+.+   ..+++ |||.||+.||..|+..                ...||+||..|....
T Consensus        16 ~~~~~CpICld~~~d---PVvT~-CGH~FC~~CI~~wl~~s~~s~~~~~~~~~~k~~~~CPvCR~~Is~~~   82 (193)
T PLN03208         16 GGDFDCNICLDQVRD---PVVTL-CGHLFCWPCIHKWTYASNNSRQRVDQYDHKREPPKCPVCKSDVSEAT   82 (193)
T ss_pred             CCccCCccCCCcCCC---cEEcC-CCchhHHHHHHHHHHhccccccccccccccCCCCcCCCCCCcCChhc
Confidence            345789999999764   45566 9999999999999852                347999999997644

>cd00162 RING RING-finger (Really Interesting New Gene) domain, a specialized type of Zn-finger of 40 to 60 residues that binds two atoms of zinc; defined by the 'cross-brace' motif C-X2-C-X(9-39)-C-X(1-3)- H-X(2-3)-(N/C/H)-X2-C-X(4-48)C-X2-C; probably involved in mediating protein-protein interactions; identified in a proteins with a wide range of functions such as viral replication, signal transduction, and development; has two variants, the C3HC4-type and a C3H2C3-type (RING-H2 finger), which have different cysteine/histidine pattern; a subset of RINGs are associated with B-Boxes (C-X2-H-X7-C-X7-C-X2-C-H-X2-H)

Probab=98.93  E-value=7.9e-10  Score=73.52  Aligned_cols=44  Identities=55%  Similarity=1.265  Sum_probs=36.4

Q ss_pred             eecccccccccCcceeecCCCCCccchhHHHHHHhc-CCCCcccCccc
Q 021708          109 ECAVCLSELEDGEKARLLPKCNHGFHVECIDMWFQS-HSTCPLCRNPV  155 (309)
Q Consensus       109 ~C~ICl~~~~~~~~~~~lp~C~H~FH~~Ci~~Wl~~-~~~CP~CR~~i  155 (309)
                      +|+||++.+  .+.+...+ |+|.||..|++.|+.. +..||+||..+
T Consensus         1 ~C~iC~~~~--~~~~~~~~-C~H~~c~~C~~~~~~~~~~~Cp~C~~~~   45 (45)
T cd00162           1 ECPICLEEF--REPVVLLP-CGHVFCRSCIDKWLKSGKNTCPLCRTPI   45 (45)
T ss_pred             CCCcCchhh--hCceEecC-CCChhcHHHHHHHHHhCcCCCCCCCCcC
Confidence            499999998  33455555 9999999999999987 77899999764

>PF13920 zf-C3HC4_3: Zinc finger, C3HC4 type (RING finger); PDB: 2YHN_B 2YHO_G 3T6P_A 2CSY_A 2VJE_B 2VJF_B 2HDP_B 2EA5_A 2ECG_A 3EB5_A

Probab=98.91  E-value=7.3e-10  Score=77.15  Aligned_cols=46  Identities=37%  Similarity=0.978  Sum_probs=39.1

Q ss_pred             CceecccccccccCcceeecCCCCCc-cchhHHHHHHhcCCCCcccCcccc
Q 021708          107 GLECAVCLSELEDGEKARLLPKCNHG-FHVECIDMWFQSHSTCPLCRNPVD  156 (309)
Q Consensus       107 ~~~C~ICl~~~~~~~~~~~lp~C~H~-FH~~Ci~~Wl~~~~~CP~CR~~i~  156 (309)
                      +..|.||++....   +.++| |||. |+..|+..|+.....||+||.+|.
T Consensus         2 ~~~C~iC~~~~~~---~~~~p-CgH~~~C~~C~~~~~~~~~~CP~Cr~~i~   48 (50)
T PF13920_consen    2 DEECPICFENPRD---VVLLP-CGHLCFCEECAERLLKRKKKCPICRQPIE   48 (50)
T ss_dssp             HSB-TTTSSSBSS---EEEET-TCEEEEEHHHHHHHHHTTSBBTTTTBB-S
T ss_pred             cCCCccCCccCCc---eEEeC-CCChHHHHHHhHHhcccCCCCCcCChhhc
Confidence            4579999999654   77787 9999 999999999999999999999875

...

>KOG0802 consensus E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=98.84  E-value=2.9e-09  Score=108.37  Aligned_cols=53  Identities=38%  Similarity=0.881  Sum_probs=45.3

Q ss_pred             CCCceecccccccccCcc--eeecCCCCCccchhHHHHHHhcCCCCcccCcccccC
Q 021708          105 KDGLECAVCLSELEDGEK--ARLLPKCNHGFHVECIDMWFQSHSTCPLCRNPVDVE  158 (309)
Q Consensus       105 ~~~~~C~ICl~~~~~~~~--~~~lp~C~H~FH~~Ci~~Wl~~~~~CP~CR~~i~~~  158 (309)
                      ..+..|+||++++..+..  .+.++ |+|+||..|+..|+++..+||+||..+...
T Consensus       289 ~~~~~C~IC~e~l~~~~~~~~~rL~-C~Hifh~~CL~~W~er~qtCP~CR~~~~~~  343 (543)
T KOG0802|consen  289 LSDELCIICLEELHSGHNITPKRLP-CGHIFHDSCLRSWFERQQTCPTCRTVLYDY  343 (543)
T ss_pred             hcCCeeeeechhhccccccccceee-cccchHHHHHHHHHHHhCcCCcchhhhhcc
Confidence            346789999999988655  67787 999999999999999999999999955443

>PF13923 zf-C3HC4_2: Zinc finger, C3HC4 type (RING finger); PDB: 3HCU_A 2ECI_A 2JMD_A 3HCS_B 3HCT_A 3ZTG_A 2YUR_A 3L11_A

Probab=98.84  E-value=2e-09  Score=71.06  Aligned_cols=39  Identities=41%  Similarity=1.143  Sum_probs=32.6

Q ss_pred             ecccccccccCcceeecCCCCCccchhHHHHHHhcCCCCccc
Q 021708          110 CAVCLSELEDGEKARLLPKCNHGFHVECIDMWFQSHSTCPLC  151 (309)
Q Consensus       110 C~ICl~~~~~~~~~~~lp~C~H~FH~~Ci~~Wl~~~~~CP~C  151 (309)
                      |+||++.+.+  .+..++ |||.|+.+|+..|++.+..||+|
T Consensus         1 C~iC~~~~~~--~~~~~~-CGH~fC~~C~~~~~~~~~~CP~C   39 (39)
T PF13923_consen    1 CPICLDELRD--PVVVTP-CGHSFCKECIEKYLEKNPKCPVC   39 (39)
T ss_dssp             ETTTTSB-SS--EEEECT-TSEEEEHHHHHHHHHCTSB-TTT
T ss_pred             CCCCCCcccC--cCEECC-CCCchhHHHHHHHHHCcCCCcCC
Confidence            8999999876  345676 99999999999999888899998

>COG5194 APC11 Component of SCF ubiquitin ligase and anaphase-promoting complex [Posttranslational modification, protein turnover, chaperones / Cell division and chromosome partitioning]

Probab=98.74  E-value=4.4e-09  Score=79.13  Aligned_cols=52  Identities=31%  Similarity=0.661  Sum_probs=39.9

Q ss_pred             ceecccccccc-----------c-CcceeecCCCCCccchhHHHHHHhcCCCCcccCcccccCC
Q 021708          108 LECAVCLSELE-----------D-GEKARLLPKCNHGFHVECIDMWFQSHSTCPLCRNPVDVER  159 (309)
Q Consensus       108 ~~C~ICl~~~~-----------~-~~~~~~lp~C~H~FH~~Ci~~Wl~~~~~CP~CR~~i~~~~  159 (309)
                      +.|+||...|.           . ++....-..|+|.||.+||.+||..+..||+||+.....+
T Consensus        21 d~CaICRnhim~~C~eCq~~~~~~~eC~v~wG~CnHaFH~HCI~rWL~Tk~~CPld~q~w~~~~   84 (88)
T COG5194          21 DVCAICRNHIMGTCPECQFGMTPGDECPVVWGVCNHAFHDHCIYRWLDTKGVCPLDRQTWVLAD   84 (88)
T ss_pred             chhhhhhccccCcCcccccCCCCCCcceEEEEecchHHHHHHHHHHHhhCCCCCCCCceeEEec
Confidence            46888777663           2 3334444459999999999999999999999999876543

>PHA02926 zinc finger-like protein; Provisional

Probab=98.71  E-value=7.5e-09  Score=92.44  Aligned_cols=51  Identities=31%  Similarity=0.842  Sum_probs=39.3

Q ss_pred             CCceecccccccccCc-----ceeecCCCCCccchhHHHHHHhcC------CCCcccCcccc
Q 021708          106 DGLECAVCLSELEDGE-----KARLLPKCNHGFHVECIDMWFQSH------STCPLCRNPVD  156 (309)
Q Consensus       106 ~~~~C~ICl~~~~~~~-----~~~~lp~C~H~FH~~Ci~~Wl~~~------~~CP~CR~~i~  156 (309)
                      .+.+|.|||+.+..+.     ..-+|+.|+|.||..||..|...+      .+||+||..+.
T Consensus       169 kE~eCgICmE~I~eK~~~~eRrFGIL~~CnHsFCl~CIr~Wr~~r~~~~~~rsCPiCR~~f~  230 (242)
T PHA02926        169 KEKECGICYEVVYSKRLENDRYFGLLDSCNHIFCITCINIWHRTRRETGASDNCPICRTRFR  230 (242)
T ss_pred             CCCCCccCccccccccccccccccccCCCCchHHHHHHHHHHHhccccCcCCcCCCCcceee
Confidence            4578999999875431     234566699999999999999653      45999998765

>PF14634 zf-RING_5: zinc-RING finger domain

Probab=98.67  E-value=1.5e-08  Score=68.78  Aligned_cols=44  Identities=27%  Similarity=0.815  Sum_probs=38.2

Q ss_pred             eecccccccccCcceeecCCCCCccchhHHHHHHhcCCCCcccCc
Q 021708          109 ECAVCLSELEDGEKARLLPKCNHGFHVECIDMWFQSHSTCPLCRN  153 (309)
Q Consensus       109 ~C~ICl~~~~~~~~~~~lp~C~H~FH~~Ci~~Wl~~~~~CP~CR~  153 (309)
                      .|.||+++|......++++ |||+|+..|+..+......||+||+
T Consensus         1 ~C~~C~~~~~~~~~~~l~~-CgH~~C~~C~~~~~~~~~~CP~C~k   44 (44)
T PF14634_consen    1 HCNICFEKYSEERRPRLTS-CGHIFCEKCLKKLKGKSVKCPICRK   44 (44)
T ss_pred             CCcCcCccccCCCCeEEcc-cCCHHHHHHHHhhcCCCCCCcCCCC
Confidence            4999999996666778887 9999999999999966778999984

>KOG0320 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=98.63  E-value=1.5e-08  Score=87.54  Aligned_cols=50  Identities=26%  Similarity=0.715  Sum_probs=41.6

Q ss_pred             CceecccccccccCcceeecCCCCCccchhHHHHHHhcCCCCcccCcccccC
Q 021708          107 GLECAVCLSELEDGEKARLLPKCNHGFHVECIDMWFQSHSTCPLCRNPVDVE  158 (309)
Q Consensus       107 ~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~Ci~~Wl~~~~~CP~CR~~i~~~  158 (309)
                      ...|+|||+.+.....  +-.+|||+||..||+..+.....||+|+..|..+
T Consensus       131 ~~~CPiCl~~~sek~~--vsTkCGHvFC~~Cik~alk~~~~CP~C~kkIt~k  180 (187)
T KOG0320|consen  131 TYKCPICLDSVSEKVP--VSTKCGHVFCSQCIKDALKNTNKCPTCRKKITHK  180 (187)
T ss_pred             ccCCCceecchhhccc--cccccchhHHHHHHHHHHHhCCCCCCcccccchh
Confidence            4579999999886433  3236999999999999999999999999877654

>PF00097 zf-C3HC4: Zinc finger, C3HC4 type (RING finger); InterPro: IPR018957 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=98.62  E-value=2.1e-08  Score=66.58  Aligned_cols=39  Identities=44%  Similarity=1.188  Sum_probs=33.0

Q ss_pred             ecccccccccCcceeecCCCCCccchhHHHHHHh--cCCCCccc
Q 021708          110 CAVCLSELEDGEKARLLPKCNHGFHVECIDMWFQ--SHSTCPLC  151 (309)
Q Consensus       110 C~ICl~~~~~~~~~~~lp~C~H~FH~~Ci~~Wl~--~~~~CP~C  151 (309)
                      |+||++.+....  .+++ |+|.||..||.+|+.  ....||+|
T Consensus         1 C~iC~~~~~~~~--~~~~-C~H~fC~~C~~~~~~~~~~~~CP~C   41 (41)
T PF00097_consen    1 CPICLEPFEDPV--ILLP-CGHSFCRDCLRKWLENSGSVKCPLC   41 (41)
T ss_dssp             ETTTSSBCSSEE--EETT-TSEEEEHHHHHHHHHHTSSSBTTTT
T ss_pred             CCcCCccccCCC--EEec-CCCcchHHHHHHHHHhcCCccCCcC
Confidence            899999987643  4676 999999999999998  56679998

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The C3HC4 type zinc-finger (RING finger) is a cysteine-rich domain of 40 to 60 residues that coordinates two zinc ions, and has the consensus sequence: C-X2-C-X(9-39)-C-X(1-3)-H-X(2-3)-C-X2-C-X(4-48)-C-X2-C where X is any amino acid []. Many proteins containing a RING finger play a key role in the ubiquitination pathway []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; PDB: 1CHC_A 2ECW_A 2Y43_B 1V87_A 2DJB_A 2H0D_B 3RPG_C 3KNV_A 2CKL_B 1JM7_A ....

>smart00184 RING Ring finger

Probab=98.61  E-value=2.8e-08  Score=63.68  Aligned_cols=38  Identities=45%  Similarity=1.246  Sum_probs=32.1

Q ss_pred             ecccccccccCcceeecCCCCCccchhHHHHHHh-cCCCCccc
Q 021708          110 CAVCLSELEDGEKARLLPKCNHGFHVECIDMWFQ-SHSTCPLC  151 (309)
Q Consensus       110 C~ICl~~~~~~~~~~~lp~C~H~FH~~Ci~~Wl~-~~~~CP~C  151 (309)
                      |+||++..   .....++ |+|.||..|++.|+. .+..||+|
T Consensus         1 C~iC~~~~---~~~~~~~-C~H~~c~~C~~~~~~~~~~~CP~C   39 (39)
T smart00184        1 CPICLEEL---KDPVVLP-CGHTFCRSCIRKWLKSGNNTCPIC   39 (39)
T ss_pred             CCcCccCC---CCcEEec-CCChHHHHHHHHHHHhCcCCCCCC
Confidence            78999983   3466777 999999999999997 66779987

E3 ubiquitin-protein ligase activity is intrinsic to the RING domain of c-Cbl and is likely to be a general function of this domain; Various RING fingers exhibit binding activity towards E2 ubiquitin-conjugating enzymes (Ubc' s)

>KOG3970 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=98.60  E-value=2.5e-07  Score=82.70  Aligned_cols=56  Identities=27%  Similarity=0.602  Sum_probs=49.4

Q ss_pred             CCCCCceecccccccccCcceeecCCCCCccchhHHHHHHhc--------CCCCcccCcccccCCC
Q 021708          103 DFKDGLECAVCLSELEDGEKARLLPKCNHGFHVECIDMWFQS--------HSTCPLCRNPVDVERS  160 (309)
Q Consensus       103 ~~~~~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~Ci~~Wl~~--------~~~CP~CR~~i~~~~~  160 (309)
                      +.+++..|.+|-..+..+|.+|+.  |.|+|||+|++.|-..        ++.||.|-..|++...
T Consensus        46 DsDY~pNC~LC~t~La~gdt~RLv--CyhlfHW~ClneraA~lPanTAPaGyqCP~Cs~eiFPp~N  109 (299)
T KOG3970|consen   46 DSDYNPNCRLCNTPLASGDTTRLV--CYHLFHWKCLNERAANLPANTAPAGYQCPCCSQEIFPPIN  109 (299)
T ss_pred             hcCCCCCCceeCCccccCcceeeh--hhhhHHHHHhhHHHhhCCCcCCCCcccCCCCCCccCCCcc
Confidence            455677899999999999999987  9999999999999854        6789999999998765

>KOG1493 consensus Anaphase-promoting complex (APC), subunit 11 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=98.59  E-value=6.5e-09  Score=77.58  Aligned_cols=51  Identities=25%  Similarity=0.757  Sum_probs=39.7

Q ss_pred             Cceeccccccccc---------CcceeecCCCCCccchhHHHHHHhc---CCCCcccCccccc
Q 021708          107 GLECAVCLSELED---------GEKARLLPKCNHGFHVECIDMWFQS---HSTCPLCRNPVDV  157 (309)
Q Consensus       107 ~~~C~ICl~~~~~---------~~~~~~lp~C~H~FH~~Ci~~Wl~~---~~~CP~CR~~i~~  157 (309)
                      +..|-||...|..         ++...++..|.|.||.+||.+|+..   +..||+||+....
T Consensus        20 ~e~CGiCRm~Fdg~Cp~Ck~PgDdCPLv~G~C~h~fh~hCI~~wl~~~tsq~~CPmcRq~~~~   82 (84)
T KOG1493|consen   20 DETCGICRMPFDGCCPDCKLPGDDCPLVWGYCLHAFHAHCILKWLNTPTSQGQCPMCRQTWQF   82 (84)
T ss_pred             CCccceEecccCCcCCCCcCCCCCCccHHHHHHHHHHHHHHHHHhcCccccccCCcchheeEe
Confidence            3479999998863         3445556679999999999999954   4569999987653

>PF15227 zf-C3HC4_4: zinc finger of C3HC4-type, RING; PDB: 2EGP_A 2ECV_A 2ECJ_A 2YSL_A 2YSJ_A

Probab=98.55  E-value=5.2e-08  Score=65.55  Aligned_cols=38  Identities=34%  Similarity=0.976  Sum_probs=29.1

Q ss_pred             ecccccccccCcceeecCCCCCccchhHHHHHHhcC----CCCccc
Q 021708          110 CAVCLSELEDGEKARLLPKCNHGFHVECIDMWFQSH----STCPLC  151 (309)
Q Consensus       110 C~ICl~~~~~~~~~~~lp~C~H~FH~~Ci~~Wl~~~----~~CP~C  151 (309)
                      |+||++.|.+   .+.++ |||.|+..||..|.+..    ..||.|
T Consensus         1 CpiC~~~~~~---Pv~l~-CGH~FC~~Cl~~~~~~~~~~~~~CP~C   42 (42)
T PF15227_consen    1 CPICLDLFKD---PVSLP-CGHSFCRSCLERLWKEPSGSGFSCPEC   42 (42)
T ss_dssp             ETTTTSB-SS---EEE-S-SSSEEEHHHHHHHHCCSSSST---SSS
T ss_pred             CCccchhhCC---ccccC-CcCHHHHHHHHHHHHccCCcCCCCcCC
Confidence            8999999987   66776 99999999999999653    469988

>smart00504 Ubox Modified RING finger domain

Probab=98.54  E-value=6.3e-08  Score=69.98  Aligned_cols=46  Identities=26%  Similarity=0.629  Sum_probs=39.7

Q ss_pred             ceecccccccccCcceeecCCCCCccchhHHHHHHhcCCCCcccCccccc
Q 021708          108 LECAVCLSELEDGEKARLLPKCNHGFHVECIDMWFQSHSTCPLCRNPVDV  157 (309)
Q Consensus       108 ~~C~ICl~~~~~~~~~~~lp~C~H~FH~~Ci~~Wl~~~~~CP~CR~~i~~  157 (309)
                      ..|+||++.|.+   ...++ |||+|+..||..|+..+.+||+|+..+..
T Consensus         2 ~~Cpi~~~~~~~---Pv~~~-~G~v~~~~~i~~~~~~~~~cP~~~~~~~~   47 (63)
T smart00504        2 FLCPISLEVMKD---PVILP-SGQTYERRAIEKWLLSHGTDPVTGQPLTH   47 (63)
T ss_pred             cCCcCCCCcCCC---CEECC-CCCEEeHHHHHHHHHHCCCCCCCcCCCCh
Confidence            469999999886   35666 99999999999999888899999987743

Modified RING finger domain, without the full complement of Zn2+-binding ligands. Probable involvement in E2-dependent ubiquitination.

>TIGR00599 rad18 DNA repair protein rad18

Probab=98.51  E-value=6.4e-08  Score=94.39  Aligned_cols=52  Identities=27%  Similarity=0.647  Sum_probs=43.6

Q ss_pred             CCCCCceecccccccccCcceeecCCCCCccchhHHHHHHhcCCCCcccCcccccC
Q 021708          103 DFKDGLECAVCLSELEDGEKARLLPKCNHGFHVECIDMWFQSHSTCPLCRNPVDVE  158 (309)
Q Consensus       103 ~~~~~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~Ci~~Wl~~~~~CP~CR~~i~~~  158 (309)
                      .++....|+||++.|..   ..+++ |+|.||..||..|+.....||+||..+...
T Consensus        22 ~Le~~l~C~IC~d~~~~---Pvitp-CgH~FCs~CI~~~l~~~~~CP~Cr~~~~~~   73 (397)
T TIGR00599        22 PLDTSLRCHICKDFFDV---PVLTS-CSHTFCSLCIRRCLSNQPKCPLCRAEDQES   73 (397)
T ss_pred             ccccccCCCcCchhhhC---ccCCC-CCCchhHHHHHHHHhCCCCCCCCCCccccc
Confidence            34566789999999865   34676 999999999999998888899999988653

This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).

>COG5574 PEX10 RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=98.40  E-value=1.3e-07  Score=86.42  Aligned_cols=50  Identities=34%  Similarity=0.812  Sum_probs=41.3

Q ss_pred             CCceecccccccccCcceeecCCCCCccchhHHHH-HHhcCCC-CcccCcccccCC
Q 021708          106 DGLECAVCLSELEDGEKARLLPKCNHGFHVECIDM-WFQSHST-CPLCRNPVDVER  159 (309)
Q Consensus       106 ~~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~Ci~~-Wl~~~~~-CP~CR~~i~~~~  159 (309)
                      .+..|.||++....   ...++ |||+||+.||.. |-.++.. ||+||+.+.+++
T Consensus       214 ~d~kC~lC~e~~~~---ps~t~-CgHlFC~~Cl~~~~t~~k~~~CplCRak~~pk~  265 (271)
T COG5574         214 ADYKCFLCLEEPEV---PSCTP-CGHLFCLSCLLISWTKKKYEFCPLCRAKVYPKK  265 (271)
T ss_pred             cccceeeeecccCC---ccccc-ccchhhHHHHHHHHHhhccccCchhhhhccchh
Confidence            35689999999664   55666 999999999999 9877766 999999887653

>KOG1734 consensus Predicted RING-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=98.39  E-value=6.3e-08  Score=88.50  Aligned_cols=53  Identities=38%  Similarity=0.805  Sum_probs=42.4

Q ss_pred             CCceecccccccccCc-------ceeecCCCCCccchhHHHHHH--hcCCCCcccCcccccCC
Q 021708          106 DGLECAVCLSELEDGE-------KARLLPKCNHGFHVECIDMWF--QSHSTCPLCRNPVDVER  159 (309)
Q Consensus       106 ~~~~C~ICl~~~~~~~-------~~~~lp~C~H~FH~~Ci~~Wl--~~~~~CP~CR~~i~~~~  159 (309)
                      ++..|+||-..+...+       ..-.|. |+|+||..||+.|.  .++++||+|+..+..+.
T Consensus       223 ~d~vCaVCg~~~~~s~~eegvienty~Ls-CnHvFHEfCIrGWcivGKkqtCPYCKekVdl~r  284 (328)
T KOG1734|consen  223 SDSVCAVCGQQIDVSVDEEGVIENTYKLS-CNHVFHEFCIRGWCIVGKKQTCPYCKEKVDLKR  284 (328)
T ss_pred             CcchhHhhcchheeecchhhhhhhheeee-cccchHHHhhhhheeecCCCCCchHHHHhhHhh
Confidence            4567999998886544       455676 99999999999998  55788999998886543

>KOG0828 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=98.29  E-value=2.4e-07  Score=90.84  Aligned_cols=50  Identities=30%  Similarity=0.849  Sum_probs=38.5

Q ss_pred             CceecccccccccCc----c----------eeecCCCCCccchhHHHHHHhc-CCCCcccCccccc
Q 021708          107 GLECAVCLSELEDGE----K----------ARLLPKCNHGFHVECIDMWFQS-HSTCPLCRNPVDV  157 (309)
Q Consensus       107 ~~~C~ICl~~~~~~~----~----------~~~lp~C~H~FH~~Ci~~Wl~~-~~~CP~CR~~i~~  157 (309)
                      ..+|+||+.++.--.    +          ..+.| |.|+||..|+..|+.. +-.||+||.++.+
T Consensus       571 t~dC~ICMt~I~l~~~~s~~~~~~~~~~~nYm~tP-C~HifH~~CL~~WMd~ykl~CPvCR~pLPp  635 (636)
T KOG0828|consen  571 TNDCVICMTPIDLRSTGSDCMVASMMVRRNYMLTP-CHHIFHRQCLLQWMDTYKLICPVCRCPLPP  635 (636)
T ss_pred             cccceEeccccceeeccCcchhhhhhhhccccccc-hHHHHHHHHHHHHHhhhcccCCccCCCCCC
Confidence            347999999875211    1          23457 9999999999999985 4589999998864

>PF11793 FANCL_C: FANCL C-terminal domain; PDB: 3K1L_A

Probab=98.27  E-value=1.6e-07  Score=70.13  Aligned_cols=50  Identities=40%  Similarity=0.968  Sum_probs=24.3

Q ss_pred             ceecccccccc-cCcc-eeecC--CCCCccchhHHHHHHhc-----------CCCCcccCccccc
Q 021708          108 LECAVCLSELE-DGEK-ARLLP--KCNHGFHVECIDMWFQS-----------HSTCPLCRNPVDV  157 (309)
Q Consensus       108 ~~C~ICl~~~~-~~~~-~~~lp--~C~H~FH~~Ci~~Wl~~-----------~~~CP~CR~~i~~  157 (309)
                      .+|.||+..+. .++. ..+.+  +|++.||..||.+||..           ...||.|+.+|..
T Consensus         3 ~~C~IC~~~~~~~~~~p~~~C~n~~C~~~fH~~CL~~wf~~~~~~~~~~~~~~G~CP~C~~~i~~   67 (70)
T PF11793_consen    3 LECGICYSYRLDDGEIPDVVCPNPSCGKKFHLLCLSEWFLSLEKSRQSFIPIFGECPYCSSPISW   67 (70)
T ss_dssp             -S-SSS--SS-TT-----B--S-TT----B-SGGGHHHHHHHHSSS-TTT--EEE-TTT-SEEEG
T ss_pred             CCCCcCCcEecCCCCcCceEcCCcccCCHHHHHHHHHHHHHcccCCeeecccccCCcCCCCeeeE
Confidence            57999999876 3332 23443  69999999999999953           1249999998754

>smart00744 RINGv The RING-variant domain is a C4HC3 zinc-finger like motif found in a number of cellular and viral proteins

Probab=98.24  E-value=6.9e-07  Score=62.12  Aligned_cols=42  Identities=31%  Similarity=0.896  Sum_probs=32.4

Q ss_pred             eecccccccccCcceeecCCCC-----CccchhHHHHHHhc--CCCCcccC
Q 021708          109 ECAVCLSELEDGEKARLLPKCN-----HGFHVECIDMWFQS--HSTCPLCR  152 (309)
Q Consensus       109 ~C~ICl~~~~~~~~~~~lp~C~-----H~FH~~Ci~~Wl~~--~~~CP~CR  152 (309)
                      .|.||++. ..++...+.| |.     |.||..||.+|+..  ..+||+|+
T Consensus         1 ~CrIC~~~-~~~~~~l~~P-C~C~G~~~~vH~~Cl~~W~~~~~~~~C~iC~   49 (49)
T smart00744        1 ICRICHDE-GDEGDPLVSP-CRCKGSLKYVHQECLERWINESGNKTCEICK   49 (49)
T ss_pred             CccCCCCC-CCCCCeeEec-cccCCchhHHHHHHHHHHHHHcCCCcCCCCC
Confidence            38999993 3445555777 85     89999999999954  44799995

Some of these proteins have been shown both in vivo and in vitro to have ubiquitin E3 ligase activity. The RING-variant domain is reminiscent of both the RING and the PHD domains and may represent an evolutionary intermediate. To describe this domain the term PHD/LAP domain has been used in the past. Extended description: The RING-variant (RINGv) domain contains a C4HC3 zinc-finger-like motif similar to the PHD domain, while some of the spacing between the Cys/His residues follow a pattern somewhat closer to that found in the RING domain. The RINGv domain, similar to the RING, PHD and LIM domains, is thought to bind two zinc ions co-ordinated by the highly conserved Cys and His residues. RING variant domain: C-x (2) -C-x(10-45)-C-x (1) -C-x (7) -H-x(2)-C-x(11-25)-C-x(2)-C As opposed to a PHD: C-x(1-2) -C-x (7-13)-C-x(2-4)-C-x(4-5)-H-x(2)-C-x(10-21)-C-x(2)-C Class

>COG5219 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]

Probab=98.23  E-value=2.8e-07  Score=95.89  Aligned_cols=53  Identities=38%  Similarity=0.903  Sum_probs=40.8

Q ss_pred             CCCCceecccccccccCc---ceeecCCCCCccchhHHHHHHhc--CCCCcccCcccc
Q 021708          104 FKDGLECAVCLSELEDGE---KARLLPKCNHGFHVECIDMWFQS--HSTCPLCRNPVD  156 (309)
Q Consensus       104 ~~~~~~C~ICl~~~~~~~---~~~~lp~C~H~FH~~Ci~~Wl~~--~~~CP~CR~~i~  156 (309)
                      +....+|+||+..+..-+   .-..++.|+|.||..|+.+|+..  +.+||+||..+.
T Consensus      1466 fsG~eECaICYsvL~~vdr~lPskrC~TCknKFH~~CLyKWf~Ss~~s~CPlCRseit 1523 (1525)
T COG5219        1466 FSGHEECAICYSVLDMVDRSLPSKRCATCKNKFHTRCLYKWFASSARSNCPLCRSEIT 1523 (1525)
T ss_pred             cCCcchhhHHHHHHHHHhccCCccccchhhhhhhHHHHHHHHHhcCCCCCCccccccc
Confidence            455678999998876322   12455669999999999999965  567999997764

>KOG2930 consensus SCF ubiquitin ligase, Rbx1 component [Posttranslational modification, protein turnover, chaperones]

Probab=98.15  E-value=9.4e-07  Score=69.79  Aligned_cols=51  Identities=29%  Similarity=0.695  Sum_probs=39.4

Q ss_pred             ceecccccccc-------------cCcceeecCCCCCccchhHHHHHHhcCCCCcccCcccccC
Q 021708          108 LECAVCLSELE-------------DGEKARLLPKCNHGFHVECIDMWFQSHSTCPLCRNPVDVE  158 (309)
Q Consensus       108 ~~C~ICl~~~~-------------~~~~~~~lp~C~H~FH~~Ci~~Wl~~~~~CP~CR~~i~~~  158 (309)
                      +.|+||..-+.             .++....-..|+|.||..||..||+.+..||+|.+.....
T Consensus        47 DnCAICRnHIMd~CieCQa~~~~~~~EC~VaWG~CNHaFH~hCisrWlktr~vCPLdn~eW~~q  110 (114)
T KOG2930|consen   47 DNCAICRNHIMDLCIECQANQSATSEECTVAWGVCNHAFHFHCISRWLKTRNVCPLDNKEWVFQ  110 (114)
T ss_pred             chhHHHHHHHHHHHHhhccCCCCCCCceEEEeeecchHHHHHHHHHHHhhcCcCCCcCcceeEe
Confidence            46999876552             2344444455999999999999999999999998876543

>KOG2164 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=98.14  E-value=1.1e-06  Score=86.77  Aligned_cols=49  Identities=24%  Similarity=0.689  Sum_probs=38.8

Q ss_pred             CceecccccccccCcceeecCCCCCccchhHHHHHHhc-----CCCCcccCcccccCC
Q 021708          107 GLECAVCLSELEDGEKARLLPKCNHGFHVECIDMWFQS-----HSTCPLCRNPVDVER  159 (309)
Q Consensus       107 ~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~Ci~~Wl~~-----~~~CP~CR~~i~~~~  159 (309)
                      +..|+|||++...   ...+. |||+||..||..++..     ...||+||..|....
T Consensus       186 ~~~CPICL~~~~~---p~~t~-CGHiFC~~CiLqy~~~s~~~~~~~CPiC~s~I~~kd  239 (513)
T KOG2164|consen  186 DMQCPICLEPPSV---PVRTN-CGHIFCGPCILQYWNYSAIKGPCSCPICRSTITLKD  239 (513)
T ss_pred             CCcCCcccCCCCc---ccccc-cCceeeHHHHHHHHhhhcccCCccCCchhhhccccc
Confidence            5689999999553   34443 9999999999999854     356999999998744

>KOG0287 consensus Postreplication repair protein RAD18 [Replication, recombination and repair]

Probab=98.09  E-value=7.9e-07  Score=83.74  Aligned_cols=51  Identities=27%  Similarity=0.669  Sum_probs=44.6

Q ss_pred             CCCceecccccccccCcceeecCCCCCccchhHHHHHHhcCCCCcccCcccccCC
Q 021708          105 KDGLECAVCLSELEDGEKARLLPKCNHGFHVECIDMWFQSHSTCPLCRNPVDVER  159 (309)
Q Consensus       105 ~~~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~Ci~~Wl~~~~~CP~CR~~i~~~~  159 (309)
                      +.-+.|.||.+.|..   ..+.| |+|.||.-||..+|..+..||.|+..+.+..
T Consensus        21 D~lLRC~IC~eyf~i---p~itp-CsHtfCSlCIR~~L~~~p~CP~C~~~~~Es~   71 (442)
T KOG0287|consen   21 DDLLRCGICFEYFNI---PMITP-CSHTFCSLCIRKFLSYKPQCPTCCVTVTESD   71 (442)
T ss_pred             HHHHHHhHHHHHhcC---ceecc-ccchHHHHHHHHHhccCCCCCceecccchhh
Confidence            345689999999986   66787 9999999999999999999999999887654

>PF13445 zf-RING_UBOX: RING-type zinc-finger; PDB: 2CT2_A

Probab=98.05  E-value=2.7e-06  Score=57.53  Aligned_cols=38  Identities=29%  Similarity=0.792  Sum_probs=22.5

Q ss_pred             ecccccccccCc-ceeecCCCCCccchhHHHHHHhcC----CCCc
Q 021708          110 CAVCLSELEDGE-KARLLPKCNHGFHVECIDMWFQSH----STCP  149 (309)
Q Consensus       110 C~ICl~~~~~~~-~~~~lp~C~H~FH~~Ci~~Wl~~~----~~CP  149 (309)
                      |+||++ |...+ ..++|+ |||.|+.+||++|+..+    ..||
T Consensus         1 CpIc~e-~~~~~n~P~~L~-CGH~~c~~cl~~l~~~~~~~~~kCP   43 (43)
T PF13445_consen    1 CPICKE-FSTEENPPMVLP-CGHVFCKDCLQKLSKKSDRNRFKCP   43 (43)
T ss_dssp             -TTT-----TTSS-EEE-S-SS-EEEHHHHHHHHHH-S-S-B--T
T ss_pred             CCcccc-ccCCCCCCEEEe-CccHHHHHHHHHHHhcCCCCeeeCc
Confidence            899999 75544 468898 99999999999999743    3476

>COG5432 RAD18 RING-finger-containing E3 ubiquitin ligase [Signal transduction mechanisms]

Probab=97.99  E-value=3e-06  Score=78.42  Aligned_cols=48  Identities=25%  Similarity=0.559  Sum_probs=40.9

Q ss_pred             CCceecccccccccCcceeecCCCCCccchhHHHHHHhcCCCCcccCccccc
Q 021708          106 DGLECAVCLSELEDGEKARLLPKCNHGFHVECIDMWFQSHSTCPLCRNPVDV  157 (309)
Q Consensus       106 ~~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~Ci~~Wl~~~~~CP~CR~~i~~  157 (309)
                      ..+.|-||-+.|..   ...++ |||.||.-||..+|..+..||+||.+-.+
T Consensus        24 s~lrC~IC~~~i~i---p~~Tt-CgHtFCslCIR~hL~~qp~CP~Cr~~~~e   71 (391)
T COG5432          24 SMLRCRICDCRISI---PCETT-CGHTFCSLCIRRHLGTQPFCPVCREDPCE   71 (391)
T ss_pred             hHHHhhhhhheeec---ceecc-cccchhHHHHHHHhcCCCCCccccccHHh
Confidence            34679999999875   44555 99999999999999999999999987654

>PF04564 U-box: U-box domain; InterPro: IPR003613 Quality control of intracellular proteins is essential for cellular homeostasis

Probab=97.99  E-value=4.1e-06  Score=62.95  Aligned_cols=49  Identities=24%  Similarity=0.577  Sum_probs=37.9

Q ss_pred             CCceecccccccccCcceeecCCCCCccchhHHHHHHhc-CCCCcccCcccccC
Q 021708          106 DGLECAVCLSELEDGEKARLLPKCNHGFHVECIDMWFQS-HSTCPLCRNPVDVE  158 (309)
Q Consensus       106 ~~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~Ci~~Wl~~-~~~CP~CR~~i~~~  158 (309)
                      +.+.|+||.+-|.+   ..+++ |||.|...||..|+.. +.+||+|+..+...
T Consensus         3 ~~f~CpIt~~lM~d---PVi~~-~G~tyer~~I~~~l~~~~~~~P~t~~~l~~~   52 (73)
T PF04564_consen    3 DEFLCPITGELMRD---PVILP-SGHTYERSAIERWLEQNGGTDPFTRQPLSES   52 (73)
T ss_dssp             GGGB-TTTSSB-SS---EEEET-TSEEEEHHHHHHHHCTTSSB-TTT-SB-SGG
T ss_pred             cccCCcCcCcHhhC---ceeCC-cCCEEcHHHHHHHHHcCCCCCCCCCCcCCcc
Confidence            34679999999987   66777 9999999999999988 88999999888753

Molecular chaperones recognise and contribute to the refolding of misfolded or unfolded proteins, whereas the ubiquitin-proteasome system mediates the degradation of such abnormal proteins. Ubiquitin-protein ligases (E3s) determine the substrate specificity for ubiquitylation and have been classified into HECT and RING-finger families. More recently, however, U-box proteins, which contain a domain (the U box) of about 70 amino acids that is conserved from yeast to humans, have been identified as a new type of E3 []. Members of the U-box family of proteins constitute a class of ubiquitin-protein ligases (E3s) distinct from the HECT-type and RING finger-containing E3 families []. Using yeast two-hybrid technology, all mammalian U-box proteins have been reported to interact with molecular chaperones or co-chaperones, including Hsp90, Hsp70, DnaJc7, EKN1, CRN, and VCP. This suggests that the function of U box-type E3s is to mediate the degradation of unfolded or misfolded proteins in conjunction with molecular chaperones as receptors that recognise such abnormal proteins [, ]. Unlike the RING finger domain, IPR001841 from INTERPRO, that is stabilised by Zn2+ ions coordinated by the cysteines and a histidine, the U-box scaffold is probably stabilised by a system of salt-bridges and hydrogen bonds. The charged and polar residues that participate in this network of bonds are more strongly conserved in the U-box proteins than in classic RING fingers, which supports their role in maintaining the stability of the U box. Thus, the U box appears to have evolved from a RING finger domain by appropriation of a new set of residues required to stabilise its structure, concomitant with the loss of the original, metal-chelating residues [].; GO: 0004842 ubiquitin-protein ligase activity, 0016567 protein ubiquitination, 0000151 ubiquitin ligase complex; PDB: 1T1H_A 2C2L_D 2C2V_V 1WGM_A 2KR4_A 3L1Z_B 3L1X_A 2KRE_A 3M63_A 2QIZ_A ....

>KOG4265 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=97.94  E-value=5.9e-06  Score=78.60  Aligned_cols=51  Identities=35%  Similarity=0.810  Sum_probs=43.4

Q ss_pred             CCCceecccccccccCcceeecCCCCCc-cchhHHHHHHhcCCCCcccCcccccCC
Q 021708          105 KDGLECAVCLSELEDGEKARLLPKCNHG-FHVECIDMWFQSHSTCPLCRNPVDVER  159 (309)
Q Consensus       105 ~~~~~C~ICl~~~~~~~~~~~lp~C~H~-FH~~Ci~~Wl~~~~~CP~CR~~i~~~~  159 (309)
                      +...+|.|||.+-.+   +.+|| |.|+ .|..|.+..-..+..||+||++|....
T Consensus       288 ~~gkeCVIClse~rd---t~vLP-CRHLCLCs~Ca~~Lr~q~n~CPICRqpi~~ll  339 (349)
T KOG4265|consen  288 ESGKECVICLSESRD---TVVLP-CRHLCLCSGCAKSLRYQTNNCPICRQPIEELL  339 (349)
T ss_pred             cCCCeeEEEecCCcc---eEEec-chhhehhHhHHHHHHHhhcCCCccccchHhhh
Confidence            346799999999654   77899 9998 999999998888889999999997543

>TIGR00570 cdk7 CDK-activating kinase assembly factor MAT1

Probab=97.91  E-value=8.1e-06  Score=77.02  Aligned_cols=52  Identities=23%  Similarity=0.616  Sum_probs=37.3

Q ss_pred             Cceecccccccc-cCc-ceeecCCCCCccchhHHHHHH-hcCCCCcccCcccccCC
Q 021708          107 GLECAVCLSELE-DGE-KARLLPKCNHGFHVECIDMWF-QSHSTCPLCRNPVDVER  159 (309)
Q Consensus       107 ~~~C~ICl~~~~-~~~-~~~~lp~C~H~FH~~Ci~~Wl-~~~~~CP~CR~~i~~~~  159 (309)
                      +..|++|..+-. ..+ .+.+.+ |||.||..|++..+ .....||.|+..+....
T Consensus         3 ~~~CP~Ck~~~y~np~~kl~i~~-CGH~~C~sCv~~l~~~~~~~CP~C~~~lrk~~   57 (309)
T TIGR00570         3 DQGCPRCKTTKYRNPSLKLMVNV-CGHTLCESCVDLLFVRGSGSCPECDTPLRKNN   57 (309)
T ss_pred             CCCCCcCCCCCccCcccccccCC-CCCcccHHHHHHHhcCCCCCCCCCCCccchhh
Confidence            357999999632 223 233334 99999999999966 44567999998876543

All proteins in this family for which functions are known are cyclin dependent protein kinases that are components of TFIIH, a complex that is involved in nucleotide excision repair and transcription initiation. Also known as MAT1 (menage a trois 1). This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).

>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]

Probab=97.89  E-value=4.9e-06  Score=81.07  Aligned_cols=49  Identities=33%  Similarity=0.876  Sum_probs=38.6

Q ss_pred             CCCceecccccccccCcc-eeecCCCCCccchhHHHHHHhcCCCCcccCcccc
Q 021708          105 KDGLECAVCLSELEDGEK-ARLLPKCNHGFHVECIDMWFQSHSTCPLCRNPVD  156 (309)
Q Consensus       105 ~~~~~C~ICl~~~~~~~~-~~~lp~C~H~FH~~Ci~~Wl~~~~~CP~CR~~i~  156 (309)
                      .+...|+|||+.|..... ++.. .|.|.||..|+..|-.  .+||+||....
T Consensus       173 tELPTCpVCLERMD~s~~gi~t~-~c~Hsfh~~cl~~w~~--~scpvcR~~q~  222 (493)
T KOG0804|consen  173 TELPTCPVCLERMDSSTTGILTI-LCNHSFHCSCLMKWWD--SSCPVCRYCQS  222 (493)
T ss_pred             ccCCCcchhHhhcCccccceeee-ecccccchHHHhhccc--CcChhhhhhcC
Confidence            345689999999986553 3333 3999999999999964  58999998665

>KOG2177 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=97.87  E-value=5.1e-06  Score=75.53  Aligned_cols=45  Identities=33%  Similarity=0.938  Sum_probs=38.9

Q ss_pred             CCCCceecccccccccCcceeecCCCCCccchhHHHHHHhcCCCCcccC
Q 021708          104 FKDGLECAVCLSELEDGEKARLLPKCNHGFHVECIDMWFQSHSTCPLCR  152 (309)
Q Consensus       104 ~~~~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~Ci~~Wl~~~~~CP~CR  152 (309)
                      ..+...|+||++.|...   .+++ |+|.||..|+..|+.....||.||
T Consensus        10 ~~~~~~C~iC~~~~~~p---~~l~-C~H~~c~~C~~~~~~~~~~Cp~cr   54 (386)
T KOG2177|consen   10 LQEELTCPICLEYFREP---VLLP-CGHNFCRACLTRSWEGPLSCPVCR   54 (386)
T ss_pred             ccccccChhhHHHhhcC---cccc-ccchHhHHHHHHhcCCCcCCcccC
Confidence            34567899999999986   6787 999999999999998556799999

>KOG4172 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=97.83  E-value=5.5e-06  Score=58.19  Aligned_cols=46  Identities=26%  Similarity=0.636  Sum_probs=35.4

Q ss_pred             CceecccccccccCcceeecCCCCCc-cchhHHHHHHh-cCCCCcccCcccc
Q 021708          107 GLECAVCLSELEDGEKARLLPKCNHG-FHVECIDMWFQ-SHSTCPLCRNPVD  156 (309)
Q Consensus       107 ~~~C~ICl~~~~~~~~~~~lp~C~H~-FH~~Ci~~Wl~-~~~~CP~CR~~i~  156 (309)
                      +++|.||++.-.  +.+..+  |||+ .+.+|-.+.++ .+..||+||++|.
T Consensus         7 ~dECTICye~pv--dsVlYt--CGHMCmCy~Cg~rl~~~~~g~CPiCRapi~   54 (62)
T KOG4172|consen    7 SDECTICYEHPV--DSVLYT--CGHMCMCYACGLRLKKALHGCCPICRAPIK   54 (62)
T ss_pred             ccceeeeccCcc--hHHHHH--cchHHhHHHHHHHHHHccCCcCcchhhHHH
Confidence            378999999833  334443  9998 89999766554 6889999999875

>KOG0827 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=97.76  E-value=1.2e-05  Score=77.20  Aligned_cols=45  Identities=29%  Similarity=0.932  Sum_probs=33.2

Q ss_pred             ceecccccccccCcceeecCCCCCccchhHHHHHHhc---CCCCcccC
Q 021708          108 LECAVCLSELEDGEKARLLPKCNHGFHVECIDMWFQS---HSTCPLCR  152 (309)
Q Consensus       108 ~~C~ICl~~~~~~~~~~~lp~C~H~FH~~Ci~~Wl~~---~~~CP~CR  152 (309)
                      .+|.||.+-+-....+--...|||+||..|+..|+..   +..||.|+
T Consensus         5 A~C~Ic~d~~p~~~~l~~i~~cGhifh~~cl~qwfe~~Ps~R~cpic~   52 (465)
T KOG0827|consen    5 AECHICIDGRPNDHELGPIGTCGHIFHTTCLTQWFEGDPSNRGCPICQ   52 (465)
T ss_pred             ceeeEeccCCccccccccccchhhHHHHHHHHHHHccCCccCCCCcee
Confidence            4799994444433344333349999999999999976   35799999

>KOG0311 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=97.62  E-value=6.6e-06  Score=78.06  Aligned_cols=59  Identities=31%  Similarity=0.604  Sum_probs=45.5

Q ss_pred             eccCCCCCCceecccccccccCcceeecCCCCCccchhHHHHHHhc-CCCCcccCcccccCCC
Q 021708           99 FNQQDFKDGLECAVCLSELEDGEKARLLPKCNHGFHVECIDMWFQS-HSTCPLCRNPVDVERS  160 (309)
Q Consensus        99 ~~~~~~~~~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~Ci~~Wl~~-~~~CP~CR~~i~~~~~  160 (309)
                      ++-..+..+..|.|||+-+..   .+..+.|.|.||.+||..-++. +..||.||..+.....
T Consensus        35 ~~l~~~~~~v~c~icl~llk~---tmttkeClhrfc~~ci~~a~r~gn~ecptcRk~l~Skrs   94 (381)
T KOG0311|consen   35 VDLAMFDIQVICPICLSLLKK---TMTTKECLHRFCFDCIWKALRSGNNECPTCRKKLVSKRS   94 (381)
T ss_pred             ecHHHhhhhhccHHHHHHHHh---hcccHHHHHHHHHHHHHHHHHhcCCCCchHHhhcccccc
Confidence            334445566789999999875   3445569999999999999955 6789999998876543

>KOG4445 consensus Uncharacterized conserved protein, contains RWD domain [Function unknown]

Probab=97.58  E-value=2e-05  Score=73.39  Aligned_cols=52  Identities=23%  Similarity=0.749  Sum_probs=43.8

Q ss_pred             CceecccccccccCcceeecCCCCCccchhHHHHHHhc-----------------------CCCCcccCcccccCC
Q 021708          107 GLECAVCLSELEDGEKARLLPKCNHGFHVECIDMWFQS-----------------------HSTCPLCRNPVDVER  159 (309)
Q Consensus       107 ~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~Ci~~Wl~~-----------------------~~~CP~CR~~i~~~~  159 (309)
                      ...|.|||.-|.+++.+.+++ |.|.||..|+..+|..                       ...||+||..|..+.
T Consensus       115 ~gqCvICLygfa~~~~ft~T~-C~Hy~H~~ClaRyl~~~~~~lrqe~q~~~~~~qh~~~~~eavcpVcre~i~~e~  189 (368)
T KOG4445|consen  115 NGQCVICLYGFASSPAFTVTA-CDHYMHFACLARYLTECLTGLRQEIQDAQKERQHMKEQVEAVCPVCRERIKIEE  189 (368)
T ss_pred             CCceEEEEEeecCCCceeeeh-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHhhhhhHhhhhccccc
Confidence            357999999999999898898 9999999999988832                       235999999886554

>PF14835 zf-RING_6: zf-RING of BARD1-type protein; PDB: 1JM7_B

Probab=97.52  E-value=2.7e-05  Score=56.70  Aligned_cols=47  Identities=32%  Similarity=0.751  Sum_probs=24.2

Q ss_pred             CceecccccccccCcceeecCCCCCccchhHHHHHHhcCCCCcccCcccccC
Q 021708          107 GLECAVCLSELEDGEKARLLPKCNHGFHVECIDMWFQSHSTCPLCRNPVDVE  158 (309)
Q Consensus       107 ~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~Ci~~Wl~~~~~CP~CR~~i~~~  158 (309)
                      ...|++|.+-|..   ...+..|.|+|+..||..-+..  .||+|+.+.-.+
T Consensus         7 lLrCs~C~~~l~~---pv~l~~CeH~fCs~Ci~~~~~~--~CPvC~~Paw~q   53 (65)
T PF14835_consen    7 LLRCSICFDILKE---PVCLGGCEHIFCSSCIRDCIGS--ECPVCHTPAWIQ   53 (65)
T ss_dssp             TTS-SSS-S--SS----B---SSS--B-TTTGGGGTTT--B-SSS--B-S-S
T ss_pred             hcCCcHHHHHhcC---CceeccCccHHHHHHhHHhcCC--CCCCcCChHHHH
Confidence            4579999999876   3334459999999999886653  499999877544

>KOG0825 consensus PHD Zn-finger protein [General function prediction only]

Probab=97.51  E-value=2e-05  Score=81.09  Aligned_cols=49  Identities=27%  Similarity=0.523  Sum_probs=40.8

Q ss_pred             ceecccccccccCcceeecCCCCCccchhHHHHHHhcCCCCcccCccccc
Q 021708          108 LECAVCLSELEDGEKARLLPKCNHGFHVECIDMWFQSHSTCPLCRNPVDV  157 (309)
Q Consensus       108 ~~C~ICl~~~~~~~~~~~lp~C~H~FH~~Ci~~Wl~~~~~CP~CR~~i~~  157 (309)
                      ..|++|+..+.+....-..+ |+|.||.+||+.|-+.-.+||+||..+..
T Consensus       124 ~~CP~Ci~s~~DqL~~~~k~-c~H~FC~~Ci~sWsR~aqTCPiDR~EF~~  172 (1134)
T KOG0825|consen  124 NQCPNCLKSCNDQLEESEKH-TAHYFCEECVGSWSRCAQTCPVDRGEFGE  172 (1134)
T ss_pred             hhhhHHHHHHHHHhhccccc-cccccHHHHhhhhhhhcccCchhhhhhhe
Confidence            35888888887766555554 99999999999999999999999986643

>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=97.51  E-value=5.9e-05  Score=72.87  Aligned_cols=49  Identities=31%  Similarity=0.832  Sum_probs=37.0

Q ss_pred             CCceeccccccccc-CcceeecCCCCCccchhHHHHHHhc--CCCCcccCcc
Q 021708          106 DGLECAVCLSELED-GEKARLLPKCNHGFHVECIDMWFQS--HSTCPLCRNP  154 (309)
Q Consensus       106 ~~~~C~ICl~~~~~-~~~~~~lp~C~H~FH~~Ci~~Wl~~--~~~CP~CR~~  154 (309)
                      .+..|+|||+.+.. ++.....+.|||.|...||+.||.+  ...||.|...
T Consensus         3 ~g~tcpiclds~~~~g~hr~vsl~cghlFgs~cie~wl~k~~~~~cp~c~~k   54 (463)
T KOG1645|consen    3 CGTTCPICLDSYTTAGNHRIVSLQCGHLFGSQCIEKWLGKKTKMQCPLCSGK   54 (463)
T ss_pred             ccccCceeeeeeeecCceEEeeecccccccHHHHHHHHhhhhhhhCcccCCh
Confidence            34679999999864 4444444459999999999999953  3459999764

>KOG1039 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=97.42  E-value=7e-05  Score=71.98  Aligned_cols=52  Identities=33%  Similarity=0.957  Sum_probs=40.2

Q ss_pred             CCceecccccccccCc----ceeecCCCCCccchhHHHHHH--hc-----CCCCcccCccccc
Q 021708          106 DGLECAVCLSELEDGE----KARLLPKCNHGFHVECIDMWF--QS-----HSTCPLCRNPVDV  157 (309)
Q Consensus       106 ~~~~C~ICl~~~~~~~----~~~~lp~C~H~FH~~Ci~~Wl--~~-----~~~CP~CR~~i~~  157 (309)
                      .+.+|.||++.+.+..    ....+|.|.|.||..||+.|-  .+     ...||.||.....
T Consensus       160 ~~k~CGICme~i~ek~~~~~rfgilpnC~H~~Cl~Cir~wr~~~q~~~~~sksCP~CRv~s~~  222 (344)
T KOG1039|consen  160 SEKECGICMETINEKAASERRFGILPNCNHSFCLNCIRKWRQATQFESKTSKSCPFCRVPSSF  222 (344)
T ss_pred             ccccceehhhhccccchhhhhcccCCCcchhhhhcHhHhhhhhhccccccccCCCcccCcccc
Confidence            3568999999976543    123567799999999999998  43     4679999987653

>KOG0824 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=97.35  E-value=8.5e-05  Score=69.32  Aligned_cols=48  Identities=31%  Similarity=0.637  Sum_probs=38.5

Q ss_pred             CceecccccccccCcceeecCCCCCccchhHHHHHHhc-CCCCcccCcccccC
Q 021708          107 GLECAVCLSELEDGEKARLLPKCNHGFHVECIDMWFQS-HSTCPLCRNPVDVE  158 (309)
Q Consensus       107 ~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~Ci~~Wl~~-~~~CP~CR~~i~~~  158 (309)
                      ..+|+||+.....   ...++ |+|.||..||+.-... ..+|++||.+|...
T Consensus         7 ~~eC~IC~nt~n~---Pv~l~-C~HkFCyiCiKGsy~ndk~~CavCR~pids~   55 (324)
T KOG0824|consen    7 KKECLICYNTGNC---PVNLY-CFHKFCYICIKGSYKNDKKTCAVCRFPIDST   55 (324)
T ss_pred             CCcceeeeccCCc---Ccccc-ccchhhhhhhcchhhcCCCCCceecCCCCcc
Confidence            3579999998554   45666 9999999999988755 55699999998654

>KOG1785 consensus Tyrosine kinase negative regulator CBL [Defense mechanisms]

Probab=97.25  E-value=0.0001  Score=71.15  Aligned_cols=45  Identities=29%  Similarity=0.844  Sum_probs=37.5

Q ss_pred             eecccccccccCcceeecCCCCCccchhHHHHHHhc--CCCCcccCccccc
Q 021708          109 ECAVCLSELEDGEKARLLPKCNHGFHVECIDMWFQS--HSTCPLCRNPVDV  157 (309)
Q Consensus       109 ~C~ICl~~~~~~~~~~~lp~C~H~FH~~Ci~~Wl~~--~~~CP~CR~~i~~  157 (309)
                      -|-||-+.   +..+++-| |||+.|..|+..|-..  ..+||.||..|..
T Consensus       371 LCKICaen---dKdvkIEP-CGHLlCt~CLa~WQ~sd~gq~CPFCRcEIKG  417 (563)
T KOG1785|consen  371 LCKICAEN---DKDVKIEP-CGHLLCTSCLAAWQDSDEGQTCPFCRCEIKG  417 (563)
T ss_pred             HHHHhhcc---CCCccccc-ccchHHHHHHHhhcccCCCCCCCceeeEecc
Confidence            39999887   44578888 9999999999999844  6789999998753

>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]

Probab=97.23  E-value=0.00019  Score=69.11  Aligned_cols=50  Identities=28%  Similarity=0.733  Sum_probs=39.7

Q ss_pred             CCceecccccccccCc-ceeecCCCCCccchhHHHHHHhcC--CCCcccCcccc
Q 021708          106 DGLECAVCLSELEDGE-KARLLPKCNHGFHVECIDMWFQSH--STCPLCRNPVD  156 (309)
Q Consensus       106 ~~~~C~ICl~~~~~~~-~~~~lp~C~H~FH~~Ci~~Wl~~~--~~CP~CR~~i~  156 (309)
                      -+..|..|-+.+..++ ...-|| |.|+||..|+...|.++  .+||.||.-+-
T Consensus       364 ~~L~Cg~CGe~~Glk~e~LqALp-CsHIfH~rCl~e~L~~n~~rsCP~CrklrS  416 (518)
T KOG1941|consen  364 TELYCGLCGESIGLKNERLQALP-CSHIFHLRCLQEILENNGTRSCPNCRKLRS  416 (518)
T ss_pred             HhhhhhhhhhhhcCCcccccccc-hhHHHHHHHHHHHHHhCCCCCCccHHHHHh
Confidence            4567999999886543 466788 99999999999999664  56999995444

>KOG0978 consensus E3 ubiquitin ligase involved in syntaxin degradation [Posttranslational modification, protein turnover, chaperones]

Probab=97.11  E-value=0.00013  Score=75.35  Aligned_cols=50  Identities=30%  Similarity=0.771  Sum_probs=38.3

Q ss_pred             CCCceecccccccccCcceeecCCCCCccchhHHHHHHh-cCCCCcccCcccccC
Q 021708          105 KDGLECAVCLSELEDGEKARLLPKCNHGFHVECIDMWFQ-SHSTCPLCRNPVDVE  158 (309)
Q Consensus       105 ~~~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~Ci~~Wl~-~~~~CP~CR~~i~~~  158 (309)
                      ..-..|++|-..+.+  .+ +. +|+|+||..|+..-+. ++..||.|.......
T Consensus       641 K~~LkCs~Cn~R~Kd--~v-I~-kC~H~FC~~Cvq~r~etRqRKCP~Cn~aFgan  691 (698)
T KOG0978|consen  641 KELLKCSVCNTRWKD--AV-IT-KCGHVFCEECVQTRYETRQRKCPKCNAAFGAN  691 (698)
T ss_pred             HhceeCCCccCchhh--HH-HH-hcchHHHHHHHHHHHHHhcCCCCCCCCCCCcc
Confidence            345689999977553  33 33 5999999999999994 577899998877643

>PF05883 Baculo_RING: Baculovirus U-box/Ring-like domain; InterPro: IPR008573 This family consists of several Baculovirus proteins of around 130 residues in length

Probab=96.86  E-value=0.00047  Score=57.51  Aligned_cols=46  Identities=20%  Similarity=0.574  Sum_probs=34.6

Q ss_pred             CceecccccccccCcceeecCCCC------CccchhHHHHHHhcCCCCcccCc
Q 021708          107 GLECAVCLSELEDGEKARLLPKCN------HGFHVECIDMWFQSHSTCPLCRN  153 (309)
Q Consensus       107 ~~~C~ICl~~~~~~~~~~~lp~C~------H~FH~~Ci~~Wl~~~~~CP~CR~  153 (309)
                      ..+|.||++.+...+.++.++ ||      |+||.+|+.+|-..+..=|.=|.
T Consensus        26 ~~EC~IC~~~I~~~~GvV~vt-~~g~lnLEkmfc~~C~~rw~~~~~rDPfnR~   77 (134)
T PF05883_consen   26 TVECQICFDRIDNNDGVVYVT-DGGTLNLEKMFCADCDKRWRRERNRDPFNRN   77 (134)
T ss_pred             CeeehhhhhhhhcCCCEEEEe-cCCeehHHHHHHHHHHHHHHhhccCCCcccc
Confidence            468999999999856666666 77      99999999999544444454443

The function of this family is unknown, but it appears to be related to the U-box and ring finger domain by profile-profile comparison.

>KOG0801 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=96.67  E-value=0.00055  Score=58.64  Aligned_cols=40  Identities=38%  Similarity=0.785  Sum_probs=31.4

Q ss_pred             CceeeccCCCC-CCceecccccccccCcceeecCCCCCccch
Q 021708           95 PVVAFNQQDFK-DGLECAVCLSELEDGEKARLLPKCNHGFHV  135 (309)
Q Consensus        95 p~~~~~~~~~~-~~~~C~ICl~~~~~~~~~~~lp~C~H~FH~  135 (309)
                      |.+.|+++... +.-||.||||++..++.+-.|| |-.+||+
T Consensus       164 PrlsYNdDVL~ddkGECvICLEdL~~GdtIARLP-CLCIYHK  204 (205)
T KOG0801|consen  164 PRLSYNDDVLKDDKGECVICLEDLEAGDTIARLP-CLCIYHK  204 (205)
T ss_pred             cccccccchhcccCCcEEEEhhhccCCCceeccc-eEEEeec
Confidence            44455554443 3358999999999999999999 9999996

>KOG2660 consensus Locus-specific chromosome binding proteins [Function unknown]

Probab=96.65  E-value=0.00042  Score=65.51  Aligned_cols=51  Identities=24%  Similarity=0.566  Sum_probs=43.0

Q ss_pred             CCCceecccccccccCcceeecCCCCCccchhHHHHHHhcCCCCcccCcccccC
Q 021708          105 KDGLECAVCLSELEDGEKARLLPKCNHGFHVECIDMWFQSHSTCPLCRNPVDVE  158 (309)
Q Consensus       105 ~~~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~Ci~~Wl~~~~~CP~CR~~i~~~  158 (309)
                      .....|.+|-..|-+...+.   .|-|.||..||..+|.....||.|...|...
T Consensus        13 n~~itC~LC~GYliDATTI~---eCLHTFCkSCivk~l~~~~~CP~C~i~ih~t   63 (331)
T KOG2660|consen   13 NPHITCRLCGGYLIDATTIT---ECLHTFCKSCIVKYLEESKYCPTCDIVIHKT   63 (331)
T ss_pred             ccceehhhccceeecchhHH---HHHHHHHHHHHHHHHHHhccCCccceeccCc
Confidence            34568999999998765554   4999999999999999999999998877654

>KOG0826 consensus Predicted E3 ubiquitin ligase involved in peroxisome organization [Posttranslational modification, protein turnover, chaperones]

Probab=96.62  E-value=0.0042  Score=58.84  Aligned_cols=47  Identities=23%  Similarity=0.448  Sum_probs=37.0

Q ss_pred             CCceecccccccccCcceeecCCCCCccchhHHHHHHhcCCCCcccCccc
Q 021708          106 DGLECAVCLSELEDGEKARLLPKCNHGFHVECIDMWFQSHSTCPLCRNPV  155 (309)
Q Consensus       106 ~~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~Ci~~Wl~~~~~CP~CR~~i  155 (309)
                      +...|+||+.....+..+ ..  -|-+||+.|+..++.++..||+=..++
T Consensus       299 ~~~~CpvClk~r~Nptvl-~v--SGyVfCY~Ci~~Yv~~~~~CPVT~~p~  345 (357)
T KOG0826|consen  299 DREVCPVCLKKRQNPTVL-EV--SGYVFCYPCIFSYVVNYGHCPVTGYPA  345 (357)
T ss_pred             ccccChhHHhccCCCceE-Ee--cceEEeHHHHHHHHHhcCCCCccCCcc
Confidence            345799999997764333 32  799999999999999999999865544

>KOG1952 consensus Transcription factor NF-X1, contains NFX-type Zn2+-binding and R3H domains [Transcription]

Probab=96.59  E-value=0.0012  Score=68.98  Aligned_cols=49  Identities=29%  Similarity=0.724  Sum_probs=40.5

Q ss_pred             CceecccccccccCcceeecCCCCCccchhHHHHHHhc-------CCCCcccCccc
Q 021708          107 GLECAVCLSELEDGEKARLLPKCNHGFHVECIDMWFQS-------HSTCPLCRNPV  155 (309)
Q Consensus       107 ~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~Ci~~Wl~~-------~~~CP~CR~~i  155 (309)
                      ..+|.||++.+.....+.-...|+|+||..||..|-.+       ...||.|....
T Consensus       191 ~yeCmIC~e~I~~t~~~WSC~sCYhVFHl~CI~~WArs~ek~~~~~WrCP~Cqsv~  246 (950)
T KOG1952|consen  191 KYECMICTERIKRTAPVWSCKSCYHVFHLNCIKKWARSSEKTGQDGWRCPACQSVS  246 (950)
T ss_pred             ceEEEEeeeeccccCCceecchhhhhhhHHHHHHHHHHhhhccCccccCCcccchh
Confidence            35899999999988877777679999999999999954       34599998443

>KOG4159 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=96.58  E-value=0.0013  Score=64.61  Aligned_cols=49  Identities=35%  Similarity=0.856  Sum_probs=41.4

Q ss_pred             CCCceecccccccccCcceeecCCCCCccchhHHHHHHhcCCCCcccCccccc
Q 021708          105 KDGLECAVCLSELEDGEKARLLPKCNHGFHVECIDMWFQSHSTCPLCRNPVDV  157 (309)
Q Consensus       105 ~~~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~Ci~~Wl~~~~~CP~CR~~i~~  157 (309)
                      ..+.+|.||+.-+..   ...+| |||.|+..||+.-+.....||.||..+..
T Consensus        82 ~sef~c~vc~~~l~~---pv~tp-cghs~c~~Cl~r~ld~~~~cp~Cr~~l~e  130 (398)
T KOG4159|consen   82 RSEFECCVCSRALYP---PVVTP-CGHSFCLECLDRSLDQETECPLCRDELVE  130 (398)
T ss_pred             cchhhhhhhHhhcCC---Ccccc-ccccccHHHHHHHhccCCCCccccccccc
Confidence            456789999888776   55667 99999999999987777779999998875

>PF11789 zf-Nse: Zinc-finger of the MIZ type in Nse subunit; PDB: 2YU4_A 3HTK_C

Probab=96.56  E-value=0.0012  Score=47.23  Aligned_cols=41  Identities=34%  Similarity=0.715  Sum_probs=26.8

Q ss_pred             CceecccccccccCcceeecCCCCCccchhHHHHHHhc--CCCCcc
Q 021708          107 GLECAVCLSELEDGEKARLLPKCNHGFHVECIDMWFQS--HSTCPL  150 (309)
Q Consensus       107 ~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~Ci~~Wl~~--~~~CP~  150 (309)
                      ...|+|.+..|.+.  ++-. +|+|.|-.+.|..||.+  ...||+
T Consensus        11 ~~~CPiT~~~~~~P--V~s~-~C~H~fek~aI~~~i~~~~~~~CPv   53 (57)
T PF11789_consen   11 SLKCPITLQPFEDP--VKSK-KCGHTFEKEAILQYIQRNGSKRCPV   53 (57)
T ss_dssp             -SB-TTTSSB-SSE--EEES-SS--EEEHHHHHHHCTTTS-EE-SC
T ss_pred             ccCCCCcCChhhCC--cCcC-CCCCeecHHHHHHHHHhcCCCCCCC
Confidence            46799999998863  4444 59999999999999943  445998

>KOG0297 consensus TNF receptor-associated factor [Signal transduction mechanisms]

Probab=96.56  E-value=0.0012  Score=64.79  Aligned_cols=53  Identities=28%  Similarity=0.736  Sum_probs=43.3

Q ss_pred             CCCCceecccccccccCcceeecCCCCCccchhHHHHHHhcCCCCcccCcccccCC
Q 021708          104 FKDGLECAVCLSELEDGEKARLLPKCNHGFHVECIDMWFQSHSTCPLCRNPVDVER  159 (309)
Q Consensus       104 ~~~~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~Ci~~Wl~~~~~CP~CR~~i~~~~  159 (309)
                      .+++..|++|...+.+.-..  . .|||.||..|+..|+..+..||.|+..+....
T Consensus        18 ~~~~l~C~~C~~vl~~p~~~--~-~cgh~fC~~C~~~~~~~~~~cp~~~~~~~~~~   70 (391)
T KOG0297|consen   18 LDENLLCPICMSVLRDPVQT--T-TCGHRFCAGCLLESLSNHQKCPVCRQELTQAE   70 (391)
T ss_pred             CcccccCccccccccCCCCC--C-CCCCcccccccchhhccCcCCcccccccchhh
Confidence            45667899999998864332  3 39999999999999999999999988776544

>PHA02825 LAP/PHD finger-like protein; Provisional

Probab=96.48  E-value=0.0027  Score=54.45  Aligned_cols=52  Identities=21%  Similarity=0.689  Sum_probs=37.0

Q ss_pred             CCCceecccccccccCcceeecCCCCC---ccchhHHHHHHhc--CCCCcccCcccccCC
Q 021708          105 KDGLECAVCLSELEDGEKARLLPKCNH---GFHVECIDMWFQS--HSTCPLCRNPVDVER  159 (309)
Q Consensus       105 ~~~~~C~ICl~~~~~~~~~~~lp~C~H---~FH~~Ci~~Wl~~--~~~CP~CR~~i~~~~  159 (309)
                      ..+..|-||.++-.  +...-+ +|..   ..|.+|+..|+..  ...|+.|+..+....
T Consensus         6 ~~~~~CRIC~~~~~--~~~~PC-~CkGs~k~VH~sCL~rWi~~s~~~~CeiC~~~Y~i~~   62 (162)
T PHA02825          6 LMDKCCWICKDEYD--VVTNYC-NCKNENKIVHKECLEEWINTSKNKSCKICNGPYNIKK   62 (162)
T ss_pred             CCCCeeEecCCCCC--CccCCc-ccCCCchHHHHHHHHHHHhcCCCCcccccCCeEEEEE
Confidence            45678999999843  223222 2555   5799999999954  456999999887553

>PHA02862 5L protein; Provisional

Probab=96.43  E-value=0.0025  Score=53.70  Aligned_cols=49  Identities=22%  Similarity=0.735  Sum_probs=35.2

Q ss_pred             CceecccccccccCcceeecCCCC---CccchhHHHHHHhc--CCCCcccCcccccC
Q 021708          107 GLECAVCLSELEDGEKARLLPKCN---HGFHVECIDMWFQS--HSTCPLCRNPVDVE  158 (309)
Q Consensus       107 ~~~C~ICl~~~~~~~~~~~lp~C~---H~FH~~Ci~~Wl~~--~~~CP~CR~~i~~~  158 (309)
                      ++.|-||+++-.  +...-+ +|.   ...|.+|+..|+..  +..|++|+..+...
T Consensus         2 ~diCWIC~~~~~--e~~~PC-~C~GS~K~VHq~CL~~WIn~S~k~~CeLCkteY~Ik   55 (156)
T PHA02862          2 SDICWICNDVCD--ERNNFC-GCNEEYKVVHIKCMQLWINYSKKKECNLCKTKYNIK   55 (156)
T ss_pred             CCEEEEecCcCC--CCcccc-cccCcchhHHHHHHHHHHhcCCCcCccCCCCeEEEE
Confidence            357999999843  333322 242   57999999999954  45699999988654

>PF12906 RINGv: RING-variant domain; PDB: 2D8S_A 1VYX_A

Probab=96.35  E-value=0.0029  Score=43.45  Aligned_cols=41  Identities=29%  Similarity=0.936  Sum_probs=26.6

Q ss_pred             ecccccccccCcceeecC-CCCC---ccchhHHHHHHh--cCCCCccc
Q 021708          110 CAVCLSELEDGEKARLLP-KCNH---GFHVECIDMWFQ--SHSTCPLC  151 (309)
Q Consensus       110 C~ICl~~~~~~~~~~~lp-~C~H---~FH~~Ci~~Wl~--~~~~CP~C  151 (309)
                      |-||++.-..++ ..+.| +|.-   ..|..||..|+.  ....|++|
T Consensus         1 CrIC~~~~~~~~-~li~pC~C~Gs~~~vH~~CL~~W~~~~~~~~C~~C   47 (47)
T PF12906_consen    1 CRICLEGEEEDE-PLISPCRCKGSMKYVHRSCLERWIRESGNRKCEIC   47 (47)
T ss_dssp             ETTTTEE-SSSS--EE-SSS-SSCCGSEECCHHHHHHHHHT-SB-TTT
T ss_pred             CeEeCCcCCCCC-ceecccccCCCcchhHHHHHHHHHHhcCCCcCCCC
Confidence            789999977655 33444 2444   789999999996  45669887

>KOG1428 consensus Inhibitor of type V adenylyl cyclases/Neuronal presynaptic protein Highwire/PAM/RPM-1 [Signal transduction mechanisms]

Probab=96.34  E-value=0.0025  Score=69.78  Aligned_cols=67  Identities=22%  Similarity=0.569  Sum_probs=48.5

Q ss_pred             HHHhcCCceeeccCC--CCCCceecccccccccCcceeecCCCCCccchhHHHHHHhcC----------CCCcccCcccc
Q 021708           89 AILRKIPVVAFNQQD--FKDGLECAVCLSELEDGEKARLLPKCNHGFHVECIDMWFQSH----------STCPLCRNPVD  156 (309)
Q Consensus        89 ~~~~~lp~~~~~~~~--~~~~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~Ci~~Wl~~~----------~~CP~CR~~i~  156 (309)
                      ..-.-||.+..+...  .+.++.|.||+.+--.....+.|. |+|+||..|...-|++.          -.||+|+..|.
T Consensus      3466 NEE~CLPCl~Cdks~tkQD~DDmCmICFTE~L~AAP~IqL~-C~HiFHlqC~R~vLE~RW~GPRItF~FisCPiC~n~In 3544 (3738)
T KOG1428|consen 3466 NEEHCLPCLHCDKSATKQDADDMCMICFTEALSAAPAIQLD-CSHIFHLQCCRRVLENRWLGPRITFGFISCPICKNKIN 3544 (3738)
T ss_pred             chhhcccccccChhhhhcccCceEEEEehhhhCCCcceecC-CccchhHHHHHHHHHhcccCCeeEEeeeecccccchhh
Confidence            344556766654433  345678999998866556667775 99999999998877552          25999999875

>PF14570 zf-RING_4: RING/Ubox like zinc-binding domain; PDB: 1E4U_A 1UR6_B

Probab=96.24  E-value=0.004  Score=42.98  Aligned_cols=45  Identities=24%  Similarity=0.593  Sum_probs=23.3

Q ss_pred             ecccccccccCc-ceeecCCCCCccchhHHHHHHh-cCCCCcccCccc
Q 021708          110 CAVCLSELEDGE-KARLLPKCNHGFHVECIDMWFQ-SHSTCPLCRNPV  155 (309)
Q Consensus       110 C~ICl~~~~~~~-~~~~lp~C~H~FH~~Ci~~Wl~-~~~~CP~CR~~i  155 (309)
                      |++|.+++...+ ...-.+ |++.++..|...-+. .+..||-||.++
T Consensus         1 cp~C~e~~d~~d~~~~PC~-Cgf~IC~~C~~~i~~~~~g~CPgCr~~Y   47 (48)
T PF14570_consen    1 CPLCDEELDETDKDFYPCE-CGFQICRFCYHDILENEGGRCPGCREPY   47 (48)
T ss_dssp             -TTTS-B--CCCTT--SST-TS----HHHHHHHTTSS-SB-TTT--B-
T ss_pred             CCCcccccccCCCccccCc-CCCcHHHHHHHHHHhccCCCCCCCCCCC
Confidence            789999994433 344454 889999999999886 478899999875

>KOG2879 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=96.15  E-value=0.0052  Score=56.94  Aligned_cols=50  Identities=30%  Similarity=0.452  Sum_probs=37.7

Q ss_pred             CCCCceecccccccccCcceeecCCCCCccchhHHHHHHhc--CCCCcccCcccc
Q 021708          104 FKDGLECAVCLSELEDGEKARLLPKCNHGFHVECIDMWFQS--HSTCPLCRNPVD  156 (309)
Q Consensus       104 ~~~~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~Ci~~Wl~~--~~~CP~CR~~i~  156 (309)
                      ...+.+|++|-+.=..  ..... +|+|+||.-||..-+..  ..+||.|-..+.
T Consensus       236 ~t~~~~C~~Cg~~Pti--P~~~~-~C~HiyCY~Ci~ts~~~~asf~Cp~Cg~~~~  287 (298)
T KOG2879|consen  236 GTSDTECPVCGEPPTI--PHVIG-KCGHIYCYYCIATSRLWDASFTCPLCGENVE  287 (298)
T ss_pred             ccCCceeeccCCCCCC--Ceeec-cccceeehhhhhhhhcchhhcccCccCCCCc
Confidence            4567799999988433  22344 49999999999998864  478999977665

>KOG1002 consensus Nucleotide excision repair protein RAD16 [Replication, recombination and repair]

Probab=96.14  E-value=0.0023  Score=63.94  Aligned_cols=50  Identities=32%  Similarity=0.729  Sum_probs=38.8

Q ss_pred             CCCceecccccccccCcceeecCCCCCccchhHHHHHHhc-----CCCCcccCcccccC
Q 021708          105 KDGLECAVCLSELEDGEKARLLPKCNHGFHVECIDMWFQS-----HSTCPLCRNPVDVE  158 (309)
Q Consensus       105 ~~~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~Ci~~Wl~~-----~~~CP~CR~~i~~~  158 (309)
                      ++..+|-+|-++-++   .+... |.|.||..||..++..     +-+||.|...+..+
T Consensus       534 k~~~~C~lc~d~aed---~i~s~-ChH~FCrlCi~eyv~~f~~~~nvtCP~C~i~LsiD  588 (791)
T KOG1002|consen  534 KGEVECGLCHDPAED---YIESS-CHHKFCRLCIKEYVESFMENNNVTCPVCHIGLSID  588 (791)
T ss_pred             cCceeecccCChhhh---hHhhh-hhHHHHHHHHHHHHHhhhcccCCCCcccccccccc
Confidence            445689999998443   44453 9999999999999843     56899998877654

>KOG3268 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=95.86  E-value=0.005  Score=53.68  Aligned_cols=30  Identities=30%  Similarity=1.058  Sum_probs=25.1

Q ss_pred             CCCccchhHHHHHHhc-----------CCCCcccCcccccC
Q 021708          129 CNHGFHVECIDMWFQS-----------HSTCPLCRNPVDVE  158 (309)
Q Consensus       129 C~H~FH~~Ci~~Wl~~-----------~~~CP~CR~~i~~~  158 (309)
                      ||.-||.-|+..||+.           -..||+|-.+|..+
T Consensus       190 CgkpFHqiCL~dWLRgilTsRQSFdiiFGeCPYCS~PialK  230 (234)
T KOG3268|consen  190 CGKPFHQICLTDWLRGILTSRQSFDIIFGECPYCSDPIALK  230 (234)
T ss_pred             cCCcHHHHHHHHHHHHHhhccceeeeeeccCCCCCCcceee
Confidence            9999999999999964           23599999888654

>KOG1814 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=95.79  E-value=0.0045  Score=60.25  Aligned_cols=47  Identities=26%  Similarity=0.626  Sum_probs=38.3

Q ss_pred             CceecccccccccCcceeecCCCCCccchhHHHHHHhc--------CCCCcccCcc
Q 021708          107 GLECAVCLSELEDGEKARLLPKCNHGFHVECIDMWFQS--------HSTCPLCRNP  154 (309)
Q Consensus       107 ~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~Ci~~Wl~~--------~~~CP~CR~~  154 (309)
                      ...|.||+++......+..+| |+|+||..|+..++..        .-.||-|...
T Consensus       184 lf~C~ICf~e~~G~~c~~~lp-C~Hv~Ck~C~kdY~~~~i~eg~v~~l~Cp~~~C~  238 (445)
T KOG1814|consen  184 LFDCCICFEEQMGQHCFKFLP-CSHVFCKSCLKDYFTIQIQEGQVSCLKCPDPKCG  238 (445)
T ss_pred             cccceeeehhhcCcceeeecc-cchHHHHHHHHHHHHHhhhcceeeeecCCCCCCc
Confidence            357999999988778899999 9999999999999943        2248776543

>PF10367 Vps39_2: Vacuolar sorting protein 39 domain 2; InterPro: IPR019453 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1

Probab=95.77  E-value=0.0037  Score=49.43  Aligned_cols=33  Identities=30%  Similarity=0.733  Sum_probs=26.7

Q ss_pred             CCCceecccccccccCcceeecCCCCCccchhHHH
Q 021708          105 KDGLECAVCLSELEDGEKARLLPKCNHGFHVECID  139 (309)
Q Consensus       105 ~~~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~Ci~  139 (309)
                      .++..|++|-..+.. ....+.| |||+||..|++
T Consensus        76 ~~~~~C~vC~k~l~~-~~f~~~p-~~~v~H~~C~~  108 (109)
T PF10367_consen   76 TESTKCSVCGKPLGN-SVFVVFP-CGHVVHYSCIK  108 (109)
T ss_pred             CCCCCccCcCCcCCC-ceEEEeC-CCeEEeccccc
Confidence            445679999999986 4556677 99999999975

Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised In Vps39 this domain is involved in localisation and in mediating the interactions with Vps11 [].

>KOG3039 consensus Uncharacterized conserved protein [Function unknown]

Probab=95.48  E-value=0.012  Score=53.88  Aligned_cols=50  Identities=18%  Similarity=0.361  Sum_probs=44.0

Q ss_pred             eecccccccccCcceeecCCCCCccchhHHHHHHhcCCCCcccCcccccC
Q 021708          109 ECAVCLSELEDGEKARLLPKCNHGFHVECIDMWFQSHSTCPLCRNPVDVE  158 (309)
Q Consensus       109 ~C~ICl~~~~~~~~~~~lp~C~H~FH~~Ci~~Wl~~~~~CP~CR~~i~~~  158 (309)
                      .|+||.+.+.....+..|..|||+|+.+|+++.+.....||+|-.++...
T Consensus       223 iCpvtrd~LtNt~~ca~Lr~sg~Vv~~ecvEklir~D~v~pv~d~plkdr  272 (303)
T KOG3039|consen  223 ICPVTRDTLTNTTPCAVLRPSGHVVTKECVEKLIRKDMVDPVTDKPLKDR  272 (303)
T ss_pred             ecccchhhhcCccceEEeccCCcEeeHHHHHHhccccccccCCCCcCccc
Confidence            59999999998777777767999999999999999999999998877654

>KOG1571 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=95.47  E-value=0.0081  Score=57.61  Aligned_cols=43  Identities=33%  Similarity=0.688  Sum_probs=31.8

Q ss_pred             CceecccccccccCcceeecCCCCCccchhHHHHHHhcCCCCcccCcccc
Q 021708          107 GLECAVCLSELEDGEKARLLPKCNHGFHVECIDMWFQSHSTCPLCRNPVD  156 (309)
Q Consensus       107 ~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~Ci~~Wl~~~~~CP~CR~~i~  156 (309)
                      .+.|.||+++..+   ...+| |||+-+  |..--.. ...||+||..|.
T Consensus       305 p~lcVVcl~e~~~---~~fvp-cGh~cc--ct~cs~~-l~~CPvCR~rI~  347 (355)
T KOG1571|consen  305 PDLCVVCLDEPKS---AVFVP-CGHVCC--CTLCSKH-LPQCPVCRQRIR  347 (355)
T ss_pred             CCceEEecCCccc---eeeec-CCcEEE--chHHHhh-CCCCchhHHHHH
Confidence            4579999999665   77888 999965  5444332 344999998875

>COG5222 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]

Probab=95.46  E-value=0.011  Score=55.47  Aligned_cols=43  Identities=35%  Similarity=0.721  Sum_probs=34.5

Q ss_pred             ceecccccccccCcceeecCCCCCccchhHHHHHHh-cCCCCcccCc
Q 021708          108 LECAVCLSELEDGEKARLLPKCNHGFHVECIDMWFQ-SHSTCPLCRN  153 (309)
Q Consensus       108 ~~C~ICl~~~~~~~~~~~lp~C~H~FH~~Ci~~Wl~-~~~~CP~CR~  153 (309)
                      +.|+.|..-+...   ..++.|+|.||.+||..-|. ....||.|..
T Consensus       275 LkCplc~~Llrnp---~kT~cC~~~fc~eci~~al~dsDf~CpnC~r  318 (427)
T COG5222         275 LKCPLCHCLLRNP---MKTPCCGHTFCDECIGTALLDSDFKCPNCSR  318 (427)
T ss_pred             ccCcchhhhhhCc---ccCccccchHHHHHHhhhhhhccccCCCccc
Confidence            7899999887653   33455999999999998884 5677999976

>COG5152 Uncharacterized conserved protein, contains RING and CCCH-type Zn-fingers [General function prediction only]

Probab=95.32  E-value=0.0063  Score=53.90  Aligned_cols=44  Identities=23%  Similarity=0.614  Sum_probs=37.1

Q ss_pred             ceecccccccccCcceeecCCCCCccchhHHHHHHhcCCCCcccCccc
Q 021708          108 LECAVCLSELEDGEKARLLPKCNHGFHVECIDMWFQSHSTCPLCRNPV  155 (309)
Q Consensus       108 ~~C~ICl~~~~~~~~~~~lp~C~H~FH~~Ci~~Wl~~~~~CP~CR~~i  155 (309)
                      +.|.||-.+|..   .++.. |||.||..|...-+.....|-+|....
T Consensus       197 F~C~iCKkdy~s---pvvt~-CGH~FC~~Cai~~y~kg~~C~~Cgk~t  240 (259)
T COG5152         197 FLCGICKKDYES---PVVTE-CGHSFCSLCAIRKYQKGDECGVCGKAT  240 (259)
T ss_pred             eeehhchhhccc---hhhhh-cchhHHHHHHHHHhccCCcceecchhh
Confidence            479999999986   34443 999999999999999999999997644

>PHA03096 p28-like protein; Provisional

Probab=95.26  E-value=0.0084  Score=56.47  Aligned_cols=46  Identities=26%  Similarity=0.616  Sum_probs=33.5

Q ss_pred             ceecccccccccCc----ceeecCCCCCccchhHHHHHHhc---CCCCcccCc
Q 021708          108 LECAVCLSELEDGE----KARLLPKCNHGFHVECIDMWFQS---HSTCPLCRN  153 (309)
Q Consensus       108 ~~C~ICl~~~~~~~----~~~~lp~C~H~FH~~Ci~~Wl~~---~~~CP~CR~  153 (309)
                      .+|.||++......    .--.|+.|.|.|+..|+..|-..   ..+||.||.
T Consensus       179 k~c~ic~e~~~~k~~~~~~fgil~~c~h~fc~~ci~~wr~~~~~~e~~~~c~~  231 (284)
T PHA03096        179 KICGICLENIKAKYIIKKYYGILSEIKHEFNIFCIKIWMTESLYKETEPENRR  231 (284)
T ss_pred             hhcccchhhhhhhccccccccccccCCcHHHHHHHHHHHHhhhhcccCccccc
Confidence            57999999976542    23467789999999999999843   334555543

>KOG4692 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=94.95  E-value=0.014  Score=55.90  Aligned_cols=48  Identities=23%  Similarity=0.527  Sum_probs=40.4

Q ss_pred             CCceecccccccccCcceeecCCCCCccchhHHHHHHhcCCCCcccCccccc
Q 021708          106 DGLECAVCLSELEDGEKARLLPKCNHGFHVECIDMWFQSHSTCPLCRNPVDV  157 (309)
Q Consensus       106 ~~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~Ci~~Wl~~~~~CP~CR~~i~~  157 (309)
                      ++..|+||...   .......| |+|.=|..||.+.+.+.+.|=.|+..+..
T Consensus       421 Ed~lCpICyA~---pi~Avf~P-C~H~SC~~CI~qHlmN~k~CFfCktTv~~  468 (489)
T KOG4692|consen  421 EDNLCPICYAG---PINAVFAP-CSHRSCYGCITQHLMNCKRCFFCKTTVID  468 (489)
T ss_pred             ccccCcceecc---cchhhccC-CCCchHHHHHHHHHhcCCeeeEecceeee
Confidence            45679999876   23356777 99999999999999999999999988864

>COG5175 MOT2 Transcriptional repressor [Transcription]

Probab=94.38  E-value=0.025  Score=53.96  Aligned_cols=51  Identities=25%  Similarity=0.496  Sum_probs=35.3

Q ss_pred             CceecccccccccCcce-eecCCCCCccchhHHHHHHh-cCCCCcccCcccccC
Q 021708          107 GLECAVCLSELEDGEKA-RLLPKCNHGFHVECIDMWFQ-SHSTCPLCRNPVDVE  158 (309)
Q Consensus       107 ~~~C~ICl~~~~~~~~~-~~lp~C~H~FH~~Ci~~Wl~-~~~~CP~CR~~i~~~  158 (309)
                      ++-|++|+++|...|+- .-+| ||...|.-|...--. -+..||.||+.+..+
T Consensus        14 ed~cplcie~mditdknf~pc~-cgy~ic~fc~~~irq~lngrcpacrr~y~de   66 (480)
T COG5175          14 EDYCPLCIEPMDITDKNFFPCP-CGYQICQFCYNNIRQNLNGRCPACRRKYDDE   66 (480)
T ss_pred             cccCcccccccccccCCcccCC-cccHHHHHHHHHHHhhccCCChHhhhhcccc
Confidence            34599999999887764 4455 997666666444332 256799999987654

>KOG0827 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=94.29  E-value=0.0035  Score=60.56  Aligned_cols=49  Identities=20%  Similarity=0.593  Sum_probs=42.0

Q ss_pred             eecccccccccC-cceeecCCCCCccchhHHHHHHhcCCCCcccCcccccC
Q 021708          109 ECAVCLSELEDG-EKARLLPKCNHGFHVECIDMWFQSHSTCPLCRNPVDVE  158 (309)
Q Consensus       109 ~C~ICl~~~~~~-~~~~~lp~C~H~FH~~Ci~~Wl~~~~~CP~CR~~i~~~  158 (309)
                      .|+||.+.+... +.+..+. |||.+|.+||.+||.....||.||..+...
T Consensus       198 sl~I~~~slK~~y~k~~~~~-~g~~~~~~kL~k~L~~~~kl~~~~rel~~~  247 (465)
T KOG0827|consen  198 SLSICFESLKQNYDKISAIV-CGHIYHHGKLSKWLATKRKLPSCRRELPKN  247 (465)
T ss_pred             hhHhhHHHHHHHHHHHHHHh-hcccchhhHHHHHHHHHHHhHHHHhhhhhh
Confidence            599999998865 5566664 999999999999999888999999988643

>KOG1813 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=94.26  E-value=0.016  Score=54.23  Aligned_cols=45  Identities=22%  Similarity=0.494  Sum_probs=37.9

Q ss_pred             ceecccccccccCcceeecCCCCCccchhHHHHHHhcCCCCcccCcccc
Q 021708          108 LECAVCLSELEDGEKARLLPKCNHGFHVECIDMWFQSHSTCPLCRNPVD  156 (309)
Q Consensus       108 ~~C~ICl~~~~~~~~~~~lp~C~H~FH~~Ci~~Wl~~~~~CP~CR~~i~  156 (309)
                      +.|-||...|...   ++. +|+|.||..|...-+.....|.+|-+.+.
T Consensus       242 f~c~icr~~f~~p---Vvt-~c~h~fc~~ca~~~~qk~~~c~vC~~~t~  286 (313)
T KOG1813|consen  242 FKCFICRKYFYRP---VVT-KCGHYFCEVCALKPYQKGEKCYVCSQQTH  286 (313)
T ss_pred             ccccccccccccc---hhh-cCCceeehhhhccccccCCcceecccccc
Confidence            4599999999863   334 49999999999999999999999977654

>PF08746 zf-RING-like: RING-like domain; InterPro: IPR014857 This is a zinc finger domain that is related to the C3HC4 RING finger domain (IPR001841 from INTERPRO)

Probab=94.21  E-value=0.027  Score=37.91  Aligned_cols=41  Identities=29%  Similarity=0.831  Sum_probs=22.8

Q ss_pred             ecccccccccCcceeecCCCCCccchhHHHHHHhcCC--CCccc
Q 021708          110 CAVCLSELEDGEKARLLPKCNHGFHVECIDMWFQSHS--TCPLC  151 (309)
Q Consensus       110 C~ICl~~~~~~~~~~~lp~C~H~FH~~Ci~~Wl~~~~--~CP~C  151 (309)
                      |.+|.+-+..|..-... .|+=.+|..|+..++....  .||.|
T Consensus         1 C~~C~~iv~~G~~C~~~-~C~~r~H~~C~~~y~r~~~~~~CP~C   43 (43)
T PF08746_consen    1 CEACKEIVTQGQRCSNR-DCNVRLHDDCFKKYFRHRSNPKCPNC   43 (43)
T ss_dssp             -TTT-SB-SSSEE-SS---S--EE-HHHHHHHTTT-SS-B-TTT
T ss_pred             CcccchhHeeeccCCCC-ccCchHHHHHHHHHHhcCCCCCCcCC
Confidence            66777776655443222 3888999999999997655  79988

; PDB: 3NW0_A 2CT0_A.

>KOG4739 consensus Uncharacterized protein involved in synaptonemal complex formation [Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=94.20  E-value=0.017  Score=52.70  Aligned_cols=46  Identities=24%  Similarity=0.606  Sum_probs=34.2

Q ss_pred             eecccccccccCcceeecCCCCCccchhHHHHHHhcCCCCcccCcccccC
Q 021708          109 ECAVCLSELEDGEKARLLPKCNHGFHVECIDMWFQSHSTCPLCRNPVDVE  158 (309)
Q Consensus       109 ~C~ICl~~~~~~~~~~~lp~C~H~FH~~Ci~~Wl~~~~~CP~CR~~i~~~  158 (309)
                      -|..|..-=. ++...++. |.|+||..|...-..  ..||+|+..|-..
T Consensus         5 hCn~C~~~~~-~~~f~LTa-C~HvfC~~C~k~~~~--~~C~lCkk~ir~i   50 (233)
T KOG4739|consen    5 HCNKCFRFPS-QDPFFLTA-CRHVFCEPCLKASSP--DVCPLCKKSIRII   50 (233)
T ss_pred             EeccccccCC-CCceeeee-chhhhhhhhcccCCc--cccccccceeeee
Confidence            4777776544 66777776 999999999776433  2899999987543

>KOG2034 consensus Vacuolar sorting protein PEP3/VPS18 [Intracellular trafficking, secretion, and vesicular transport]

Probab=94.19  E-value=0.024  Score=59.99  Aligned_cols=38  Identities=24%  Similarity=0.461  Sum_probs=30.0

Q ss_pred             CCCCceecccccccccCcceeecCCCCCccchhHHHHHHh
Q 021708          104 FKDGLECAVCLSELEDGEKARLLPKCNHGFHVECIDMWFQ  143 (309)
Q Consensus       104 ~~~~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~Ci~~Wl~  143 (309)
                      .+.++.|.+|...+... ...+.| |||.||++||.+-..
T Consensus       814 ~ep~d~C~~C~~~ll~~-pF~vf~-CgH~FH~~Cl~~~v~  851 (911)
T KOG2034|consen  814 LEPQDSCDHCGRPLLIK-PFYVFP-CGHCFHRDCLIRHVL  851 (911)
T ss_pred             ecCccchHHhcchhhcC-cceeee-ccchHHHHHHHHHHH
Confidence            35567899999998764 445566 999999999998763

>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]

Probab=94.09  E-value=0.024  Score=59.67  Aligned_cols=40  Identities=25%  Similarity=0.746  Sum_probs=31.3

Q ss_pred             ceecccccccccCcceeecCCCCCccchhHHHHHHhcCCCCcccCc
Q 021708          108 LECAVCLSELEDGEKARLLPKCNHGFHVECIDMWFQSHSTCPLCRN  153 (309)
Q Consensus       108 ~~C~ICl~~~~~~~~~~~lp~C~H~FH~~Ci~~Wl~~~~~CP~CR~  153 (309)
                      ..|..|-..+.-.-. -.  .|||.||.+|+.   .....||.|+.
T Consensus       841 skCs~C~~~LdlP~V-hF--~CgHsyHqhC~e---~~~~~CP~C~~  880 (933)
T KOG2114|consen  841 SKCSACEGTLDLPFV-HF--LCGHSYHQHCLE---DKEDKCPKCLP  880 (933)
T ss_pred             eeecccCCcccccee-ee--ecccHHHHHhhc---cCcccCCccch
Confidence            579999998875422 22  399999999999   45667999987

>PF04641 Rtf2: Rtf2 RING-finger

Probab=93.83  E-value=0.074  Score=49.44  Aligned_cols=54  Identities=22%  Similarity=0.433  Sum_probs=42.0

Q ss_pred             CCCceecccccccccCcceeecCCCCCccchhHHHHHHhcCCCCcccCcccccCC
Q 021708          105 KDGLECAVCLSELEDGEKARLLPKCNHGFHVECIDMWFQSHSTCPLCRNPVDVER  159 (309)
Q Consensus       105 ~~~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~Ci~~Wl~~~~~CP~CR~~i~~~~  159 (309)
                      .....|+|+..+|........+-.|||+|-..+|..-- ....||+|-.++...+
T Consensus       111 ~~~~~CPvt~~~~~~~~~fv~l~~cG~V~s~~alke~k-~~~~Cp~c~~~f~~~D  164 (260)
T PF04641_consen  111 EGRFICPVTGKEFNGKHKFVYLRPCGCVFSEKALKELK-KSKKCPVCGKPFTEED  164 (260)
T ss_pred             CceeECCCCCcccCCceeEEEEcCCCCEeeHHHHHhhc-ccccccccCCccccCC
Confidence            34568999999997655555554599999999999973 3567999998887543

>KOG4185 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=93.77  E-value=0.044  Score=51.52  Aligned_cols=47  Identities=28%  Similarity=0.735  Sum_probs=38.4

Q ss_pred             ceecccccccccCc---ceeecCCCCCccchhHHHHHHhcC-CCCcccCccc
Q 021708          108 LECAVCLSELEDGE---KARLLPKCNHGFHVECIDMWFQSH-STCPLCRNPV  155 (309)
Q Consensus       108 ~~C~ICl~~~~~~~---~~~~lp~C~H~FH~~Ci~~Wl~~~-~~CP~CR~~i  155 (309)
                      .+|-||-++|...+   ..+.| +|||.|+..|+..-+... ..||.||...
T Consensus         4 ~~c~~c~~~~s~~~~~~~p~~l-~c~h~~c~~c~~~l~~~~~i~cpfcR~~~   54 (296)
T KOG4185|consen    4 PECEICNEDYSSEDGDHIPRVL-KCGHTICQNCASKLLGNSRILCPFCRETT   54 (296)
T ss_pred             CceeecCccccccCcccCCccc-ccCceehHhHHHHHhcCceeeccCCCCcc
Confidence            57999999998764   24666 499999999999888654 4599999986

>KOG4275 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=93.71  E-value=0.013  Score=54.79  Aligned_cols=42  Identities=26%  Similarity=0.651  Sum_probs=31.7

Q ss_pred             CceecccccccccCcceeecCCCCCc-cchhHHHHHHhcCCCCcccCcccc
Q 021708          107 GLECAVCLSELEDGEKARLLPKCNHG-FHVECIDMWFQSHSTCPLCRNPVD  156 (309)
Q Consensus       107 ~~~C~ICl~~~~~~~~~~~lp~C~H~-FH~~Ci~~Wl~~~~~CP~CR~~i~  156 (309)
                      ..-|.||++.-.   ...+|+ |||. -|.+|-...    ..||+||+-|.
T Consensus       300 ~~LC~ICmDaP~---DCvfLe-CGHmVtCt~CGkrm----~eCPICRqyi~  342 (350)
T KOG4275|consen  300 RRLCAICMDAPR---DCVFLE-CGHMVTCTKCGKRM----NECPICRQYIV  342 (350)
T ss_pred             HHHHHHHhcCCc---ceEEee-cCcEEeehhhcccc----ccCchHHHHHH
Confidence            346999999843   366787 9997 788896553    37999998764

>PF14446 Prok-RING_1: Prokaryotic RING finger family 1

Probab=93.55  E-value=0.083  Score=37.35  Aligned_cols=34  Identities=29%  Similarity=0.845  Sum_probs=30.7

Q ss_pred             CceecccccccccCcceeecCCCCCccchhHHHH
Q 021708          107 GLECAVCLSELEDGEKARLLPKCNHGFHVECIDM  140 (309)
Q Consensus       107 ~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~Ci~~  140 (309)
                      ...|.+|-+.|..++.+.+.|.|+-.+|..|.+.
T Consensus         5 ~~~C~~Cg~~~~~~dDiVvCp~CgapyHR~C~~~   38 (54)
T PF14446_consen    5 GCKCPVCGKKFKDGDDIVVCPECGAPYHRDCWEK   38 (54)
T ss_pred             CccChhhCCcccCCCCEEECCCCCCcccHHHHhh
Confidence            4579999999999999999999999999999655

>KOG1940 consensus Zn-finger protein [General function prediction only]

Probab=93.34  E-value=0.045  Score=51.22  Aligned_cols=44  Identities=30%  Similarity=0.668  Sum_probs=37.5

Q ss_pred             eecccccccccCcc-eeecCCCCCccchhHHHHHHhcCCCCcccCc
Q 021708          109 ECAVCLSELEDGEK-ARLLPKCNHGFHVECIDMWFQSHSTCPLCRN  153 (309)
Q Consensus       109 ~C~ICl~~~~~~~~-~~~lp~C~H~FH~~Ci~~Wl~~~~~CP~CR~  153 (309)
                      .|+||.+.+..... +..++ |||.-|..|+......+++||+|..
T Consensus       160 ncPic~e~l~~s~~~~~~~~-CgH~~h~~cf~e~~~~~y~CP~C~~  204 (276)
T KOG1940|consen  160 NCPICKEYLFLSFEDAGVLK-CGHYMHSRCFEEMICEGYTCPICSK  204 (276)
T ss_pred             CCchhHHHhccccccCCccC-cccchHHHHHHHHhccCCCCCcccc
Confidence            49999999776554 45665 9999999999999988899999988

>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=93.03  E-value=0.055  Score=56.47  Aligned_cols=23  Identities=35%  Similarity=0.941  Sum_probs=21.5

Q ss_pred             CCCCccchhHHHHHHhcCCCCcc
Q 021708          128 KCNHGFHVECIDMWFQSHSTCPL  150 (309)
Q Consensus       128 ~C~H~FH~~Ci~~Wl~~~~~CP~  150 (309)
                      .|+|+-|..|...|+..+..||.
T Consensus      1047 ~C~Hv~H~sc~~eWf~~gd~Cps 1069 (1081)
T KOG0309|consen 1047 TCGHVGHTSCMMEWFRTGDVCPS 1069 (1081)
T ss_pred             cccccccHHHHHHHHhcCCcCCC
Confidence            49999999999999999999985

>COG5236 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]

Probab=92.27  E-value=0.17  Score=48.51  Aligned_cols=47  Identities=23%  Similarity=0.663  Sum_probs=36.6

Q ss_pred             CCCceecccccccccCcceeecCCCCCccchhHHHHH--HhcCCCCcccCccc
Q 021708          105 KDGLECAVCLSELEDGEKARLLPKCNHGFHVECIDMW--FQSHSTCPLCRNPV  155 (309)
Q Consensus       105 ~~~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~Ci~~W--l~~~~~CP~CR~~i  155 (309)
                      +++..|.||-+.+.-   .-++| |+|..|-.|....  |...+.||+||...
T Consensus        59 Een~~C~ICA~~~TY---s~~~P-C~H~~CH~Ca~RlRALY~~K~C~~CrTE~  107 (493)
T COG5236          59 EENMNCQICAGSTTY---SARYP-CGHQICHACAVRLRALYMQKGCPLCRTET  107 (493)
T ss_pred             cccceeEEecCCceE---EEecc-CCchHHHHHHHHHHHHHhccCCCcccccc
Confidence            345679999988653   56788 9999999997653  46678899999865

>KOG2932 consensus E3 ubiquitin ligase involved in ubiquitination of E-cadherin complex [Posttranslational modification, protein turnover, chaperones]

Probab=91.64  E-value=0.072  Score=50.35  Aligned_cols=43  Identities=35%  Similarity=0.797  Sum_probs=30.8

Q ss_pred             eecccccccccCcceeecCCCCCccchhHHHHHHhcCCCCcccCcccc
Q 021708          109 ECAVCLSELEDGEKARLLPKCNHGFHVECIDMWFQSHSTCPLCRNPVD  156 (309)
Q Consensus       109 ~C~ICl~~~~~~~~~~~lp~C~H~FH~~Ci~~Wl~~~~~CP~CR~~i~  156 (309)
                      .|--|--.+..  .=|+.| |+|+||.+|...  ...+.||.|-..|.
T Consensus        92 fCd~Cd~PI~I--YGRmIP-CkHvFCl~CAr~--~~dK~Cp~C~d~Vq  134 (389)
T KOG2932|consen   92 FCDRCDFPIAI--YGRMIP-CKHVFCLECARS--DSDKICPLCDDRVQ  134 (389)
T ss_pred             eecccCCccee--eecccc-cchhhhhhhhhc--CccccCcCcccHHH
Confidence            57777555432  347888 999999999765  33568999987663

>PF14447 Prok-RING_4: Prokaryotic RING finger family 4

Probab=91.38  E-value=0.11  Score=36.80  Aligned_cols=45  Identities=29%  Similarity=0.691  Sum_probs=32.0

Q ss_pred             ceecccccccccCcceeecCCCCCccchhHHHHHHhcCCCCcccCcccccC
Q 021708          108 LECAVCLSELEDGEKARLLPKCNHGFHVECIDMWFQSHSTCPLCRNPVDVE  158 (309)
Q Consensus       108 ~~C~ICl~~~~~~~~~~~lp~C~H~FH~~Ci~~Wl~~~~~CP~CR~~i~~~  158 (309)
                      ..|..|...   +.+-.++| |+|+.+..|.+.+  +-.-||.|..++...
T Consensus         8 ~~~~~~~~~---~~~~~~~p-CgH~I~~~~f~~~--rYngCPfC~~~~~~~   52 (55)
T PF14447_consen    8 QPCVFCGFV---GTKGTVLP-CGHLICDNCFPGE--RYNGCPFCGTPFEFD   52 (55)
T ss_pred             eeEEEcccc---cccccccc-ccceeeccccChh--hccCCCCCCCcccCC
Confidence            346666554   33345777 9999999998775  334699999888654

>KOG1001 consensus Helicase-like transcription factor HLTF/DNA helicase RAD5, DEAD-box superfamily [Transcription; Replication, recombination and repair]

Probab=91.35  E-value=0.075  Score=55.79  Aligned_cols=48  Identities=31%  Similarity=0.710  Sum_probs=37.2

Q ss_pred             ceecccccccccCcceeecCCCCCccchhHHHHHHhc--CCCCcccCcccccCCC
Q 021708          108 LECAVCLSELEDGEKARLLPKCNHGFHVECIDMWFQS--HSTCPLCRNPVDVERS  160 (309)
Q Consensus       108 ~~C~ICl~~~~~~~~~~~lp~C~H~FH~~Ci~~Wl~~--~~~CP~CR~~i~~~~~  160 (309)
                      ..|.||++    .+.....+ |+|.||.+|+..-+..  ...||+||..+.....
T Consensus       455 ~~c~ic~~----~~~~~it~-c~h~~c~~c~~~~i~~~~~~~~~~cr~~l~~~~l  504 (674)
T KOG1001|consen  455 HWCHICCD----LDSFFITR-CGHDFCVECLKKSIQQSENAPCPLCRNVLKEKKL  504 (674)
T ss_pred             cccccccc----cccceeec-ccchHHHHHHHhccccccCCCCcHHHHHHHHHHH
Confidence            57999999    34455565 9999999999998854  2359999998876543

>PF07800 DUF1644: Protein of unknown function (DUF1644); InterPro: IPR012866 This family consists of sequences found in a number of hypothetical plant proteins of unknown function

Probab=91.34  E-value=0.19  Score=43.15  Aligned_cols=35  Identities=23%  Similarity=0.620  Sum_probs=21.5

Q ss_pred             CceecccccccccCcceeecC-----C-----CCC-ccchhHHHHHHh
Q 021708          107 GLECAVCLSELEDGEKARLLP-----K-----CNH-GFHVECIDMWFQ  143 (309)
Q Consensus       107 ~~~C~ICl~~~~~~~~~~~lp-----~-----C~H-~FH~~Ci~~Wl~  143 (309)
                      +..|+|||+-=..  .|.++-     .     |+- .-|..||+++-+
T Consensus         2 d~~CpICme~PHN--AVLLlCSS~~kgcRpymc~Ts~rhSNCLdqfkk   47 (162)
T PF07800_consen    2 DVTCPICMEHPHN--AVLLLCSSHEKGCRPYMCDTSYRHSNCLDQFKK   47 (162)
T ss_pred             CccCceeccCCCc--eEEEEeccccCCccccccCCccchhHHHHHHHH
Confidence            4679999997432  222210     0     443 358899999864

The region of interest contains nine highly conserved cysteine residues and is approximately 160 amino acids in length, which probably represent a zinc-binding domain.

>PF10272 Tmpp129: Putative transmembrane protein precursor; InterPro: IPR018801 This entry consists of proteins conserved from worms to humans

Probab=91.12  E-value=0.28  Score=47.66  Aligned_cols=29  Identities=34%  Similarity=0.973  Sum_probs=22.4

Q ss_pred             CCCccchhHHHHHHhc-------------CCCCcccCccccc
Q 021708          129 CNHGFHVECIDMWFQS-------------HSTCPLCRNPVDV  157 (309)
Q Consensus       129 C~H~FH~~Ci~~Wl~~-------------~~~CP~CR~~i~~  157 (309)
                      |.-++|.+|+-+|+..             +-.||+||+....
T Consensus       311 CRPmWC~~Cm~kwFasrQd~~~~~~Wl~~~~~CPtCRa~FCi  352 (358)
T PF10272_consen  311 CRPMWCLECMGKWFASRQDQQHPETWLSGKCPCPTCRAKFCI  352 (358)
T ss_pred             ccchHHHHHHHHHhhhcCCCCChhhhhcCCCCCCCCccccee
Confidence            5567899999999943             3469999987643

They are purported to be transmembrane protein-precursors but their function is unknown.

>KOG2817 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=90.80  E-value=0.71  Score=45.13  Aligned_cols=45  Identities=22%  Similarity=0.493  Sum_probs=38.7

Q ss_pred             CCceecccccccccCcceeecCCCCCccchhHHHHHHhcCC---CCccc
Q 021708          106 DGLECAVCLSELEDGEKARLLPKCNHGFHVECIDMWFQSHS---TCPLC  151 (309)
Q Consensus       106 ~~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~Ci~~Wl~~~~---~CP~C  151 (309)
                      ..+.|+|=.+.-.++..+..|. |||+...+-|.+...++.   .||+|
T Consensus       333 SvF~CPVlKeqtsdeNPPm~L~-CGHVISkdAlnrLS~ng~~sfKCPYC  380 (394)
T KOG2817|consen  333 SVFICPVLKEQTSDENPPMMLI-CGHVISKDALNRLSKNGSQSFKCPYC  380 (394)
T ss_pred             ceeecccchhhccCCCCCeeee-ccceecHHHHHHHhhCCCeeeeCCCC
Confidence            4568999998888888888887 999999999999987654   59999

>COG5183 SSM4 Protein involved in mRNA turnover and stability [RNA processing and modification]

Probab=90.68  E-value=0.16  Score=53.56  Aligned_cols=54  Identities=22%  Similarity=0.536  Sum_probs=38.7

Q ss_pred             CCCceecccccccccCcceeecCCCC---CccchhHHHHHHhc--CCCCcccCcccccC
Q 021708          105 KDGLECAVCLSELEDGEKARLLPKCN---HGFHVECIDMWFQS--HSTCPLCRNPVDVE  158 (309)
Q Consensus       105 ~~~~~C~ICl~~~~~~~~~~~lp~C~---H~FH~~Ci~~Wl~~--~~~CP~CR~~i~~~  158 (309)
                      +++..|-||..+=..++....-.||.   ...|.+|+.+|+.-  ...|-+|+.++..+
T Consensus        10 ~d~~~CRICr~e~~~d~pLfhPCKC~GSIkYiH~eCL~eW~~~s~~~kCdiChy~~~Fk   68 (1175)
T COG5183          10 EDKRSCRICRTEDIRDDPLFHPCKCSGSIKYIHRECLMEWMECSGTKKCDICHYEYKFK   68 (1175)
T ss_pred             ccchhceeecCCCCCCCcCcccccccchhHHHHHHHHHHHHhcCCCcceeeecceeeee
Confidence            34578999999976666554332344   45899999999964  34599999877543

>KOG1100 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=90.62  E-value=0.11  Score=46.80  Aligned_cols=39  Identities=33%  Similarity=0.761  Sum_probs=30.2

Q ss_pred             ecccccccccCcceeecCCCCCc-cchhHHHHHHhcCCCCcccCcccc
Q 021708          110 CAVCLSELEDGEKARLLPKCNHG-FHVECIDMWFQSHSTCPLCRNPVD  156 (309)
Q Consensus       110 C~ICl~~~~~~~~~~~lp~C~H~-FH~~Ci~~Wl~~~~~CP~CR~~i~  156 (309)
                      |-.|.+.   ...+.++| |.|+ +|..|-..    -..||+|+....
T Consensus       161 Cr~C~~~---~~~VlllP-CrHl~lC~~C~~~----~~~CPiC~~~~~  200 (207)
T KOG1100|consen  161 CRKCGER---EATVLLLP-CRHLCLCGICDES----LRICPICRSPKT  200 (207)
T ss_pred             ceecCcC---CceEEeec-ccceEeccccccc----CccCCCCcChhh
Confidence            8888876   44588999 9987 88899665    245999987654

>KOG1609 consensus Protein involved in mRNA turnover and stability [RNA processing and modification]

Probab=90.30  E-value=0.15  Score=47.87  Aligned_cols=51  Identities=27%  Similarity=0.686  Sum_probs=36.7

Q ss_pred             CceecccccccccCcc-eeecCCCC-----CccchhHHHHHHh--cCCCCcccCcccccC
Q 021708          107 GLECAVCLSELEDGEK-ARLLPKCN-----HGFHVECIDMWFQ--SHSTCPLCRNPVDVE  158 (309)
Q Consensus       107 ~~~C~ICl~~~~~~~~-~~~lp~C~-----H~FH~~Ci~~Wl~--~~~~CP~CR~~i~~~  158 (309)
                      +..|-||.++...... ..+.| |.     +..|..|++.|+.  ....|.+|.......
T Consensus        78 ~~~cRIc~~~~~~~~~~~l~~p-C~C~g~l~~vH~~cl~~W~~~~~~~~CeiC~~~~~~~  136 (323)
T KOG1609|consen   78 GPICRICHEEDEESNGLLLISP-CSCKGSLAYVHRSCLEKWFSIKGNITCEICKSFFINV  136 (323)
T ss_pred             CCcEEEEecccccccccccccC-ccccCcHHHHHHHHHHhhhccccCeeeecccccceec
Confidence            4679999998764432 33444 54     6689999999996  566799998766543

>KOG3053 consensus Uncharacterized conserved protein [Function unknown]

Probab=89.70  E-value=0.16  Score=46.87  Aligned_cols=55  Identities=24%  Similarity=0.557  Sum_probs=37.0

Q ss_pred             CCCCceecccccccccCcce-eecCCCC-----CccchhHHHHHHhc--------CCCCcccCcccccCC
Q 021708          104 FKDGLECAVCLSELEDGEKA-RLLPKCN-----HGFHVECIDMWFQS--------HSTCPLCRNPVDVER  159 (309)
Q Consensus       104 ~~~~~~C~ICl~~~~~~~~~-~~lp~C~-----H~FH~~Ci~~Wl~~--------~~~CP~CR~~i~~~~  159 (309)
                      .+.+..|=||+..=+++... .+-| |.     |-.|..||..|+..        .-+||-|+..+....
T Consensus        17 ~e~eR~CWiCF~TdeDn~~a~WV~P-CrCRGt~KWVHqsCL~rWiDEK~~~n~~q~V~C~QCqTEYiiv~   85 (293)
T KOG3053|consen   17 QELERCCWICFATDEDNRLAAWVHP-CRCRGTTKWVHQSCLSRWIDEKQRGNPLQTVSCPQCQTEYIIVF   85 (293)
T ss_pred             cccceeEEEEeccCcccchhhhccc-ccccCccHHHHHHHHHHHHhHHhcCCCCceeechhhcchheeec
Confidence            34456799999874443322 3344 43     78999999999932        224999999876543

>COG5220 TFB3 Cdk activating kinase (CAK)/RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, subunit TFB3 [Cell division and chromosome partitioning / Transcription / DNA replication, recombination, and repair]

Probab=89.33  E-value=0.12  Score=47.34  Aligned_cols=49  Identities=29%  Similarity=0.607  Sum_probs=36.4

Q ss_pred             Cceecccccccc--cCcceeecCCCCCccchhHHHHHHhcCC-CCc--ccCccc
Q 021708          107 GLECAVCLSELE--DGEKARLLPKCNHGFHVECIDMWFQSHS-TCP--LCRNPV  155 (309)
Q Consensus       107 ~~~C~ICl~~~~--~~~~~~~lp~C~H~FH~~Ci~~Wl~~~~-~CP--~CR~~i  155 (309)
                      +..|+||..+..  .+..+.+-|.|.|..|..|++.-|..+. .||  -|...+
T Consensus        10 d~~CPvCksDrYLnPdik~linPECyHrmCESCvdRIFs~GpAqCP~~gC~kIL   63 (314)
T COG5220          10 DRRCPVCKSDRYLNPDIKILINPECYHRMCESCVDRIFSRGPAQCPYKGCGKIL   63 (314)
T ss_pred             cccCCccccccccCCCeEEEECHHHHHHHHHHHHHHHhcCCCCCCCCccHHHHH
Confidence            457999998733  3334555667999999999999997655 599  776544

>KOG3800 consensus Predicted E3 ubiquitin ligase containing RING finger, subunit of transcription/repair factor TFIIH and CDK-activating kinase assembly factor [Posttranslational modification, protein turnover, chaperones]

Probab=89.05  E-value=0.3  Score=45.84  Aligned_cols=48  Identities=21%  Similarity=0.576  Sum_probs=34.6

Q ss_pred             eeccccccc-ccCcceeecCCCCCccchhHHHHHHhc-CCCCcccCcccc
Q 021708          109 ECAVCLSEL-EDGEKARLLPKCNHGFHVECIDMWFQS-HSTCPLCRNPVD  156 (309)
Q Consensus       109 ~C~ICl~~~-~~~~~~~~lp~C~H~FH~~Ci~~Wl~~-~~~CP~CR~~i~  156 (309)
                      .|++|-.+. ...+...+...|+|..|..|++..+.. ...||-|...+-
T Consensus         2 ~Cp~CKt~~Y~np~lk~~in~C~H~lCEsCvd~iF~~g~~~CpeC~~iLR   51 (300)
T KOG3800|consen    2 ACPKCKTDRYLNPDLKLMINECGHRLCESCVDRIFSLGPAQCPECMVILR   51 (300)
T ss_pred             CCcccccceecCccceeeeccccchHHHHHHHHHHhcCCCCCCcccchhh
Confidence            489997763 333433333349999999999999954 567999987664

>KOG0298 consensus DEAD box-containing helicase-like transcription factor/DNA repair protein [Replication, recombination and repair]

Probab=88.92  E-value=0.13  Score=56.52  Aligned_cols=45  Identities=27%  Similarity=0.777  Sum_probs=37.2

Q ss_pred             ceecccccccccCcceeecCCCCCccchhHHHHHHhcCCCCcccCccc
Q 021708          108 LECAVCLSELEDGEKARLLPKCNHGFHVECIDMWFQSHSTCPLCRNPV  155 (309)
Q Consensus       108 ~~C~ICl~~~~~~~~~~~lp~C~H~FH~~Ci~~Wl~~~~~CP~CR~~i  155 (309)
                      ..|.||++.+.....+.   .|||.++..|...|+..+..||.|+...
T Consensus      1154 ~~c~ic~dil~~~~~I~---~cgh~~c~~c~~~~l~~~s~~~~~ksi~ 1198 (1394)
T KOG0298|consen 1154 FVCEICLDILRNQGGIA---GCGHEPCCRCDELWLYASSRCPICKSIK 1198 (1394)
T ss_pred             cchHHHHHHHHhcCCee---eechhHhhhHHHHHHHHhccCcchhhhh
Confidence            47999999988533332   3999999999999999999999998443

>KOG0802 consensus E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=88.39  E-value=0.28  Score=50.37  Aligned_cols=49  Identities=31%  Similarity=0.809  Sum_probs=39.8

Q ss_pred             CCCceecccccccccCcceeecCCCCCccchhHHHHHHhcCCCCcccCcccccCCCC
Q 021708          105 KDGLECAVCLSELEDGEKARLLPKCNHGFHVECIDMWFQSHSTCPLCRNPVDVERSN  161 (309)
Q Consensus       105 ~~~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~Ci~~Wl~~~~~CP~CR~~i~~~~~~  161 (309)
                      +....|.||++++    ..+..+ |.   |..|+.+|+..+..||+|+..+..+...
T Consensus       477 ~~~~~~~~~~~~~----~~~~~~-~~---~~~~l~~~~~~~~~~pl~~~~~~~~~~~  525 (543)
T KOG0802|consen  477 EPNDVCAICYQEM----SARITP-CS---HALCLRKWLYVQEVCPLCHTYMKEDDFL  525 (543)
T ss_pred             cccCcchHHHHHH----Hhcccc-cc---chhHHHhhhhhccccCCCchhhhccccc
Confidence            3456799999998    355565 88   9999999999999999999888765543

>KOG3002 consensus Zn finger protein [General function prediction only]

Probab=86.72  E-value=0.44  Score=45.34  Aligned_cols=45  Identities=29%  Similarity=0.558  Sum_probs=33.8

Q ss_pred             CCceecccccccccCcceeecCCCCCccchhHHHHHHhcCCCCcccCcccc
Q 021708          106 DGLECAVCLSELEDGEKARLLPKCNHGFHVECIDMWFQSHSTCPLCRNPVD  156 (309)
Q Consensus       106 ~~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~Ci~~Wl~~~~~CP~CR~~i~  156 (309)
                      +-++|+||.+.+...  +.... =||+.|..|-.+   ....||.||.++.
T Consensus        47 ~lleCPvC~~~l~~P--i~QC~-nGHlaCssC~~~---~~~~CP~Cr~~~g   91 (299)
T KOG3002|consen   47 DLLDCPVCFNPLSPP--IFQCD-NGHLACSSCRTK---VSNKCPTCRLPIG   91 (299)
T ss_pred             hhccCchhhccCccc--ceecC-CCcEehhhhhhh---hcccCCccccccc
Confidence            346899999998864  33332 469999998653   4667999999887

>KOG3161 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=86.00  E-value=0.27  Score=50.66  Aligned_cols=43  Identities=23%  Similarity=0.649  Sum_probs=31.7

Q ss_pred             CceecccccccccCc-ceeecCCCCCccchhHHHHHHhcCCCCcccCc
Q 021708          107 GLECAVCLSELEDGE-KARLLPKCNHGFHVECIDMWFQSHSTCPLCRN  153 (309)
Q Consensus       107 ~~~C~ICl~~~~~~~-~~~~lp~C~H~FH~~Ci~~Wl~~~~~CP~CR~  153 (309)
                      -..|.||+..|.... ..+.+- |||..|.+|+..-..  .+|| |+.
T Consensus        11 ~l~c~ic~n~f~~~~~~Pvsl~-cghtic~~c~~~lyn--~scp-~~~   54 (861)
T KOG3161|consen   11 LLLCDICLNLFVVQRLEPVSLQ-CGHTICGHCVQLLYN--ASCP-TKR   54 (861)
T ss_pred             HhhchHHHHHHHHHhcCccccc-ccchHHHHHHHhHhh--ccCC-CCc
Confidence            457999998886544 344554 999999999998665  5788 543

>PF02439 Adeno_E3_CR2: Adenovirus E3 region protein CR2; InterPro: IPR003470 Early region 3 (E3) of human adenoviruses (Ads) codes for proteins that appear to control viral interactions with the host []

Probab=85.75  E-value=1.9  Score=28.25  Aligned_cols=23  Identities=22%  Similarity=0.459  Sum_probs=10.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHH
Q 021708           26 IAIIVLFFVVVFILFLHLYAKWF   48 (309)
Q Consensus        26 i~ii~l~~vv~~iill~~~~~~~   48 (309)
                      ++..++..++++++.+++|+++|
T Consensus         8 IIv~V~vg~~iiii~~~~YaCcy   30 (38)
T PF02439_consen    8 IIVAVVVGMAIIIICMFYYACCY   30 (38)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHH
Confidence            33334444444444455555555

This region called CR1 (conserved region 1) [] is found three times in Human adenovirus 19 (a subgroup D adenovirus) 49 kDa protein in the E3 region. CR1 is also found in the 20.1 Kd protein of subgroup B adenoviruses. The function of this 80 amino acid region is unknown. This region is probably a divergent immunoglobulin domain.

>PF03854 zf-P11: P-11 zinc finger; InterPro: IPR003224 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=85.08  E-value=0.28  Score=33.71  Aligned_cols=29  Identities=24%  Similarity=0.895  Sum_probs=21.9

Q ss_pred             CC-CccchhHHHHHHhcCCCCcccCccccc
Q 021708          129 CN-HGFHVECIDMWFQSHSTCPLCRNPVDV  157 (309)
Q Consensus       129 C~-H~FH~~Ci~~Wl~~~~~CP~CR~~i~~  157 (309)
                      |+ |..+-.|+...|.....||+|..++..
T Consensus        18 C~dHYLCl~CLt~ml~~s~~C~iC~~~LPt   47 (50)
T PF03854_consen   18 CSDHYLCLNCLTLMLSRSDRCPICGKPLPT   47 (50)
T ss_dssp             -SS-EEEHHHHHHT-SSSSEETTTTEE---
T ss_pred             ecchhHHHHHHHHHhccccCCCcccCcCcc
Confidence            76 999999999999999999999988764

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The RING-finger is a specialised type of Zn-finger of 40 to 60 residues that binds two atoms of zinc, and is probably involved in mediating protein-protein interactions [, , ]. There are two different variants, the C3HC4-type and a C3H2C3-type, which is clearly related despite the different cysteine/histidine pattern. The latter type is sometimes referred to as 'RING-H2 finger'. The RING domain is a protein interaction domain which has been implicated in a range of diverse biological processes. Several 3D-structures for RING-fingers are known [, ]. The 3D structure of the zinc ligation system is unique to the RING domain and is referred to as the 'cross-brace' motif. The spacing of the cysteines in such a domain is: C-x(2)-C-x(9 to 39)-C-x(1 to 3)-H-x(2 to 3)-C-x(2)-C-x(4 to 48)-C-x(2)-C Metal ligand pairs one and three co-ordinate to bind one zinc ion, whilst pairs two and four bind the second. This entry represents RING finger protein Z, a small polypeptide found in some negative-strand RNA viruses including Lassa fever virus, which plays a crucial role in virion assembly and budding. RING finger Z has been shown to interact with several host proteins, including promyelocytic leukemia protein and the eukaryotic translation initiation factor 4E [, ]. It is sufficient in the absence of any other viral proteins to release virus-like particles from the infected cell []. This protein is also responsible for arenavirus superinfection exclusion; expression of this protein in a host cell strongly and specifically inhibits areanavirus transcription and replication []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0003723 RNA binding, 0008270 zinc ion binding; PDB: 2KO5_A.

>PF15050 SCIMP: SCIMP protein

Probab=84.14  E-value=2.3  Score=34.93  Aligned_cols=33  Identities=18%  Similarity=0.360  Sum_probs=14.3

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccC
Q 021708           23 IMVIAIIVLFFVVVFILFLHLYAKWFWWRIEQT   55 (309)
Q Consensus        23 i~~i~ii~l~~vv~~iill~~~~~~~~~R~~~~   55 (309)
                      ++++++.++++.+++-++|++..+|.++..+++
T Consensus         9 WiiLAVaII~vS~~lglIlyCvcR~~lRqGkkw   41 (133)
T PF15050_consen    9 WIILAVAIILVSVVLGLILYCVCRWQLRQGKKW   41 (133)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHccccc
Confidence            344444444333444444444455554333333

>KOG1812 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=83.39  E-value=0.43  Score=46.93  Aligned_cols=37  Identities=24%  Similarity=0.628  Sum_probs=27.7

Q ss_pred             CceecccccccccC-cceeecCCCCCccchhHHHHHHhc
Q 021708          107 GLECAVCLSELEDG-EKARLLPKCNHGFHVECIDMWFQS  144 (309)
Q Consensus       107 ~~~C~ICl~~~~~~-~~~~~lp~C~H~FH~~Ci~~Wl~~  144 (309)
                      ..+|.||+.+.... +... ..+|+|.||.+|+...+..
T Consensus       146 ~~~C~iC~~e~~~~~~~f~-~~~C~H~fC~~C~k~~iev  183 (384)
T KOG1812|consen  146 KEECGICFVEDPEAEDMFS-VLKCGHRFCKDCVKQHIEV  183 (384)
T ss_pred             cccCccCccccccHhhhHH-HhcccchhhhHHhHHHhhh
Confidence            46899999554444 4444 4469999999999999964

>PF13901 DUF4206: Domain of unknown function (DUF4206)

Probab=82.38  E-value=0.92  Score=40.60  Aligned_cols=41  Identities=32%  Similarity=0.839  Sum_probs=30.1

Q ss_pred             Cceecccccc-----cccCcceeecCCCCCccchhHHHHHHhcCCCCcccCc
Q 021708          107 GLECAVCLSE-----LEDGEKARLLPKCNHGFHVECIDMWFQSHSTCPLCRN  153 (309)
Q Consensus       107 ~~~C~ICl~~-----~~~~~~~~~lp~C~H~FH~~Ci~~Wl~~~~~CP~CR~  153 (309)
                      +..|-||-++     |+. +.+...++|+-+||..|...     ..||-|.+
T Consensus       152 GfiCe~C~~~~~IfPF~~-~~~~~C~~C~~v~H~~C~~~-----~~CpkC~R  197 (202)
T PF13901_consen  152 GFICEICNSDDIIFPFQI-DTTVRCPKCKSVFHKSCFRK-----KSCPKCAR  197 (202)
T ss_pred             CCCCccCCCCCCCCCCCC-CCeeeCCcCccccchhhcCC-----CCCCCcHh
Confidence            4678888753     222 35667888999999999773     67999953

>KOG3899 consensus Uncharacterized conserved protein [Function unknown]

Probab=81.48  E-value=0.71  Score=43.47  Aligned_cols=30  Identities=23%  Similarity=0.652  Sum_probs=23.8

Q ss_pred             CCCccchhHHHHHHhc-------------CCCCcccCcccccC
Q 021708          129 CNHGFHVECIDMWFQS-------------HSTCPLCRNPVDVE  158 (309)
Q Consensus       129 C~H~FH~~Ci~~Wl~~-------------~~~CP~CR~~i~~~  158 (309)
                      |..++|.+|+-.|+..             +-+||+||+.....
T Consensus       325 crp~wc~~cla~~f~~rq~~v~r~~~~~~~~~cp~cr~~fci~  367 (381)
T KOG3899|consen  325 CRPLWCRSCLAQIFIGRQDNVYRYEYHRGSAQCPTCRKNFCIR  367 (381)
T ss_pred             cccHHHHHHHHHHHhhcccchhHHHHHhcCCCCcchhhceEEe
Confidence            6678999999999843             45799999977643

>KOG0825 consensus PHD Zn-finger protein [General function prediction only]

Probab=81.18  E-value=0.85  Score=48.20  Aligned_cols=50  Identities=14%  Similarity=0.184  Sum_probs=35.0

Q ss_pred             CceecccccccccCc---ceeecCCCCCccchhHHHHHHhc------CCCCcccCcccc
Q 021708          107 GLECAVCLSELEDGE---KARLLPKCNHGFHVECIDMWFQS------HSTCPLCRNPVD  156 (309)
Q Consensus       107 ~~~C~ICl~~~~~~~---~~~~lp~C~H~FH~~Ci~~Wl~~------~~~CP~CR~~i~  156 (309)
                      ...|.+|..++..++   .+..+..|+|-||..||..|+.+      +-.|+.|...|.
T Consensus        96 s~Ss~~C~~E~S~~~ds~~i~P~~~~~~~~CP~Ci~s~~DqL~~~~k~c~H~FC~~Ci~  154 (1134)
T KOG0825|consen   96 SDTSPVCEKEHSPDVDSSNICPVQTHVENQCPNCLKSCNDQLEESEKHTAHYFCEECVG  154 (1134)
T ss_pred             ccccchhheecCCcccccCcCchhhhhhhhhhHHHHHHHHHhhccccccccccHHHHhh
Confidence            346888888777632   22223359999999999999943      445888887664

>PF07975 C1_4: TFIIH C1-like domain; InterPro: IPR004595 All proteins in this domain for which functions are known are components of the TFIIH complex which is involved in the initiation of transcription and nucleotide excision repair

Probab=80.41  E-value=1.7  Score=30.45  Aligned_cols=42  Identities=31%  Similarity=0.846  Sum_probs=24.0

Q ss_pred             ecccccccccCc------ceeecCCCCCccchhHHHHHH-hcCCCCcccC
Q 021708          110 CAVCLSELEDGE------KARLLPKCNHGFHVECIDMWF-QSHSTCPLCR  152 (309)
Q Consensus       110 C~ICl~~~~~~~------~~~~lp~C~H~FH~~Ci~~Wl-~~~~~CP~CR  152 (309)
                      |--|+..|....      .....|+|++.|+.+| |.++ +.-.+||-|-
T Consensus         2 CfgC~~~~~~~~~~~~~~~~y~C~~C~~~FC~dC-D~fiHE~LH~CPGC~   50 (51)
T PF07975_consen    2 CFGCQKPFPDGPEKKADSSRYRCPKCKNHFCIDC-DVFIHETLHNCPGCE   50 (51)
T ss_dssp             ETTTTEE-TTS-------EEE--TTTT--B-HHH-HHTTTTTS-SSSTT-
T ss_pred             CccCCCCCCCcccccccCCeEECCCCCCccccCc-ChhhhccccCCcCCC
Confidence            666777777642      3567888999999999 5555 4456799884

It includes the yeast transcription factor Ssl1 (Suppressor of stem-loop protein 1) that is essential for translation initiation and affects UV resistance. The C-terminal region is essential for transcription activity. This regions binds three zinc atoms through two independent domain. The first contains a C4 zinc finger motif, whereas the second is characterised by a CX(2)CX(2-4)FCADCD motif. The solution structure of the second C-terminal domain revealed homology with the regulatory domain of protein kinase C [].; GO: 0006281 DNA repair, 0005634 nucleus; PDB: 1Z60_A.

>KOG3005 consensus GIY-YIG type nuclease [General function prediction only]

Probab=80.26  E-value=0.92  Score=42.21  Aligned_cols=48  Identities=25%  Similarity=0.648  Sum_probs=35.3

Q ss_pred             ceecccccccccCcceeec---CCCCCccchhHHHHHHhc---------CCCCcccCccc
Q 021708          108 LECAVCLSELEDGEKARLL---PKCNHGFHVECIDMWFQS---------HSTCPLCRNPV  155 (309)
Q Consensus       108 ~~C~ICl~~~~~~~~~~~l---p~C~H~FH~~Ci~~Wl~~---------~~~CP~CR~~i  155 (309)
                      .+|.+|.+++...+..+..   +.|+-++|..|+..-+..         ...||.|+..+
T Consensus       183 ~~celc~~ei~e~~~~~a~c~~~~c~~~~h~~CLa~~~~~~e~g~~~p~eg~cp~C~~~~  242 (276)
T KOG3005|consen  183 VECELCEKEILETDWSRATCPNPDCDSLNHLTCLAEELLEVEPGQLIPLEGMCPKCEKFL  242 (276)
T ss_pred             hhhHHHHHHhccccceeccCCCCCCCchhhhhhhhHHHhccCCCceeccCCCCCchhcee
Confidence            5899999999655554432   237889999999995532         45699999854

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	309
1iym_A	55	Ring-H2 Finger Domain Of El5 Length = 55		2e-20
2kiz_A	69	Solution Structure Of Arkadia Ring-H2 Finger Domain		2e-08
1x4j_A	75	Solution Structure Of Ring Finger In Ring Finger Pr		5e-08
2ect_A	78	Solution Structure Of The Zinc Finger, C3hc4 Type (		2e-07
2l0b_A	91	Solution Nmr Structure Of Zinc Finger Domain Of E3		2e-05
2ep4_A	74	Solution Structure Of Ring Finger From Human Ring F		2e-04
2ecn_A	70	Solution Structure Of The Ring Domain Of The Human		5e-04

>pdb|1IYM|A Chain A, Ring-H2 Finger Domain Of El5 Length = 55

Iteration: 1
 Score = 95.9 bits (237), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 37/47 (78%), Positives = 42/47 (89%)
Query: 106 DGLECAVCLSELEDGEKARLLPKCNHGFHVECIDMWFQSHSTCPLCR 152
           DG+ECAVCL+ELEDGE+AR LP+C HGFH EC+DMW  SHSTCPLCR
Sbjct: 4   DGVECAVCLAELEDGEEARFLPRCGHGFHAECVDMWLGSHSTCPLCR 50

>pdb|2KIZ|A Chain A, Solution Structure Of Arkadia Ring-H2 Finger Domain Length = 69

Iteration: 1
 Score = 56.2 bits (134), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 25/50 (50%), Positives = 33/50 (66%), Gaps = 3/50 (6%)
Query: 109 ECAVCLSELEDGEKARLLPKCNHGFHVECIDMWFQSHSTCPLCRNPVDVE 158
           +C +CLS LE+GE  R LP C H FH  C+D W  ++  CP+CR  VD+E
Sbjct: 16  KCTICLSILEEGEDVRRLP-CMHLFHQVCVDQWLITNKKCPICR--VDIE 62

>pdb|1X4J|A Chain A, Solution Structure Of Ring Finger In Ring Finger Protein 38 Length = 75

Iteration: 1
 Score = 55.1 bits (131), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 23/61 (37%), Positives = 38/61 (62%), Gaps = 2/61 (3%)
Query: 93  KIPVVAFNQQDFK-DGLECAVCLSELEDGEKARLLPKCNHGFHVECIDMWFQSHSTCPLC 151
           ++P   FN  + + +   C VC+ + E  +  R+LP CNH FH +C+D W +++ TCP+C
Sbjct: 8   QLPSYRFNPNNHQSEQTLCVVCMCDFESRQLLRVLP-CNHEFHAKCVDKWLKANRTCPIC 66
Query: 152 R 152
           R
Sbjct: 67  R 67

>pdb|2ECT|A Chain A, Solution Structure Of The Zinc Finger, C3hc4 Type (Ring Finger) Domain Of Ring Finger Protein 126 Length = 78

Iteration: 1
 Score = 53.1 bits (126), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 24/54 (44%), Positives = 30/54 (55%), Gaps = 1/54 (1%)
Query: 100 NQQDFKDGLECAVCLSELEDGEKARLLPKCNHGFHVECIDMWFQSHSTCPLCRN 153
            ++    GLEC VC  +   GE  R LP CNH FH  CI  W + H +CP+CR 
Sbjct: 8   TEEHVGSGLECPVCKEDYALGESVRQLP-CNHLFHDSCIVPWLEQHDSCPVCRK 60

>pdb|2L0B|A Chain A, Solution Nmr Structure Of Zinc Finger Domain Of E3 Ubiquitin-Protein Ligase Praja-1 From Homo Sapiens, Northeast Structural Genomics Consortium (Nesg) Target Hr4710b Length = 91

Iteration: 1
 Score = 46.6 bits (109), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 20/43 (46%), Positives = 26/43 (60%), Gaps = 1/43 (2%)
Query: 110 CAVCLSELEDGEKARLLPKCNHGFHVECIDMWFQSHSTCPLCR 152
           C +C SE   G+ A  LP C+H FH  C+ +W Q   TCP+CR
Sbjct: 43  CPICCSEYVKGDVATELP-CHHYFHKPCVSIWLQKSGTCPVCR 84

>pdb|2EP4|A Chain A, Solution Structure Of Ring Finger From Human Ring Finger Protein 24 Length = 74

Iteration: 1
 Score = 43.1 bits (100), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 18/46 (39%), Positives = 26/46 (56%), Gaps = 1/46 (2%)
Query: 110 CAVCLSELEDGEKARLLPKCNHGFHVECIDMWFQSHSTCPLCRNPV 155
           CAVCL + +  ++  + P C H FH +C+  W +    CPLC  PV
Sbjct: 18  CAVCLEDFKPRDELGICP-CKHAFHRKCLIKWLEVRKVCPLCNMPV 62

>pdb|2ECN|A Chain A, Solution Structure Of The Ring Domain Of The Human Ring Finger Protein 141 Length = 70

Iteration: 1
 Score = 42.0 bits (97), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 20/51 (39%), Positives = 26/51 (50%), Gaps = 5/51 (9%)
Query: 102 QDFKDGLECAVCLSELEDGEKARLLPKCNHGFHVECIDMWFQSHSTCPLCR 152
           +   D  EC +C+    DG    +LP C H F  +CID W   H  CP+CR
Sbjct: 10  KQLTDEEECCICM----DGRADLILP-CAHSFCQKCIDKWSDRHRNCPICR 55

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	309
1iym_A	55	EL5; ring-H2 finger, ubiquitin ligase, DNA binding	8e-34
1x4j_A	75	Ring finger protein 38; structural genomics, NPPSF	3e-31
2l0b_A	91	E3 ubiquitin-protein ligase praja-1; zinc finger,	8e-28
2kiz_A	69	E3 ubiquitin-protein ligase arkadia; ring-H2 finge	1e-26
2ect_A	78	Ring finger protein 126; metal binding protein, st	6e-26
2ep4_A	74	Ring finger protein 24; zinc binding, ubiquitin, E	2e-22
2ecm_A	55	Ring finger and CHY zinc finger domain- containing	2e-21
2ecl_A	81	Ring-box protein 2; RNF7, ring domian, zinc-bindin	1e-19
2ecn_A	70	Ring finger protein 141; RNF141, ring domain, zinc	2e-19
1chc_A	68	Equine herpes virus-1 ring domain; viral protein;	3e-17
3lrq_A	100	E3 ubiquitin-protein ligase TRIM37; structural gen	2e-13
2xeu_A	64	Ring finger protein 4; transcription, zinc-finger,	2e-13
2ea6_A	69	Ring finger protein 4; RNF4, RES4-26, ring domain,	3e-13
3ng2_A	71	RNF4, snurf, ring finger protein 4; ring domain, E	6e-13
3dpl_R	106	Ring-box protein 1; ubiquitin, NEDD8, cullin, HOST	1e-12
4a0k_B	117	E3 ubiquitin-protein ligase RBX1; ligase-DNA-bindi	2e-12
2ct0_A	74	Non-SMC element 1 homolog; ring domain, structural	2e-11
2djb_A	72	Polycomb group ring finger protein 6; PCGF6, ring	8e-11
3k1l_B	381	Fancl; UBC, ring, RWD, ligase; HET: MAL CIT; 3.20A	3e-10
2csy_A	81	Zinc finger protein 183-like 1; ring finger protei	3e-09
2ckl_A	108	Polycomb group ring finger protein 4; BMI1, RING1B	1e-08
2d8t_A	71	Dactylidin, ring finger protein 146; RNF146, ring	1e-08
2y43_A	99	E3 ubiquitin-protein ligase RAD18; DNA repair, met	2e-08
1v87_A	114	Deltex protein 2; ring-H2 domain, zinc-binding dom	2e-08
4ap4_A	133	E3 ubiquitin ligase RNF4; ligase-signalling protei	2e-08
4ap4_A	133	E3 ubiquitin ligase RNF4; ligase-signalling protei	1e-06
2y1n_A	389	E3 ubiquitin-protein ligase; ligase-transferase co	6e-08
3nw0_A	238	Non-structural maintenance of chromosomes element	1e-07
4epo_C	149	E3 ubiquitin-protein ligase RNF8; coiled-coil, E3	2e-07
2yur_A	74	Retinoblastoma-binding protein 6; P53-associated c	3e-07
2ct2_A	88	Tripartite motif protein 32; zinc-finger protein H	4e-07
1e4u_A	78	Transcriptional repressor NOT4; gene regulation, t	4e-07
3ztg_A	92	E3 ubiquitin-protein ligase RBBP6; PACT, U-BOX, mR	2e-06
1jm7_B	117	BARD1, BRCA1-associated ring domain protein 1; rin	2e-06
3l11_A	115	E3 ubiquitin-protein ligase RNF168; E3 ligase, rin	3e-05
1rmd_A	116	RAG1; V(D)J recombination, antibody, MAD, ring fin	3e-05
1bor_A	56	Transcription factor PML; proto-oncogene, nuclear	3e-05
3hcs_A	170	TNF receptor-associated factor 6; cross-brace, bet	4e-05
2ecy_A	66	TNF receptor-associated factor 3; metal binding pr	5e-05
3hct_A	118	TNF receptor-associated factor 6; cross-brace, bet	7e-05
3fl2_A	124	E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA	7e-05
1g25_A	65	CDK-activating kinase assembly factor MAT1; ring f	1e-04
2ckl_B	165	Ubiquitin ligase protein RING2; BMI1, RING1B, poly	2e-04
2vje_A	64	E3 ubiquitin-protein ligase MDM2; proto-oncogene,	2e-04
2vje_B	63	MDM4 protein; proto-oncogene, phosphorylation, alt	5e-04
3vk6_A	101	E3 ubiquitin-protein ligase hakai; HYB, phosphotyr	6e-04

>1iym_A EL5; ring-H2 finger, ubiquitin ligase, DNA binding protein; NMR {Oryza sativa} SCOP: g.44.1.1 Length = 55

 Score =  116 bits (294), Expect = 8e-34
 Identities = 39/53 (73%), Positives = 44/53 (83%)

Query: 105 KDGLECAVCLSELEDGEKARLLPKCNHGFHVECIDMWFQSHSTCPLCRNPVDV 157
            DG+ECAVCL+ELEDGE+AR LP+C HGFH EC+DMW  SHSTCPLCR  V V
Sbjct: 3   DDGVECAVCLAELEDGEEARFLPRCGHGFHAECVDMWLGSHSTCPLCRLTVVV 55

>1x4j_A Ring finger protein 38; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 75

 Score =  110 bits (278), Expect = 3e-31
 Identities = 23/69 (33%), Positives = 37/69 (53%), Gaps = 2/69 (2%)

Query: 89  AILRKIPVVAFNQQDF-KDGLECAVCLSELEDGEKARLLPKCNHGFHVECIDMWFQSHST 147
               ++P   FN  +   +   C VC+ + E  +  R+LP CNH FH +C+D W +++ T
Sbjct: 4   GSSGQLPSYRFNPNNHQSEQTLCVVCMCDFESRQLLRVLP-CNHEFHAKCVDKWLKANRT 62

Query: 148 CPLCRNPVD 156
           CP+CR    
Sbjct: 63  CPICRADSG 71

>2l0b_A E3 ubiquitin-protein ligase praja-1; zinc finger, NESG, structural genomics, PSI-2, protein struc initiative; NMR {Homo sapiens} Length = 91

 Score =  102 bits (256), Expect = 8e-28
 Identities = 21/82 (25%), Positives = 33/82 (40%), Gaps = 3/82 (3%)

Query: 76  QDPAVALRAGLDPAILRKIPVVAFNQQDF--KDGLECAVCLSELEDGEKARLLPKCNHGF 133
               +          +  +P +   +        + C +C SE   G+ A  LP C+H F
Sbjct: 7   HHSHMVANPPASKESIDALPEILVTEDHGAVGQEMCCPICCSEYVKGDVATELP-CHHYF 65

Query: 134 HVECIDMWFQSHSTCPLCRNPV 155
           H  C+ +W Q   TCP+CR   
Sbjct: 66  HKPCVSIWLQKSGTCPVCRCMF 87

>2kiz_A E3 ubiquitin-protein ligase arkadia; ring-H2 finger, E3 ligase, Zn binding domain, metal zinc, zinc-finger, metal binding protein; NMR {Homo sapiens} Length = 69

 Score = 98.6 bits (246), Expect = 1e-26
 Identities = 22/59 (37%), Positives = 34/59 (57%), Gaps = 1/59 (1%)

Query: 103 DFKDGLECAVCLSELEDGEKARLLPKCNHGFHVECIDMWFQSHSTCPLCRNPVDVERSN 161
           +     +C +CLS LE+GE  R LP C H FH  C+D W  ++  CP+CR  ++ +  +
Sbjct: 10  EEDTEEKCTICLSILEEGEDVRRLP-CMHLFHQVCVDQWLITNKKCPICRVDIEAQLPS 67

>2ect_A Ring finger protein 126; metal binding protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} Length = 78

 Score = 97.1 bits (242), Expect = 6e-26
 Identities = 24/68 (35%), Positives = 34/68 (50%), Gaps = 1/68 (1%)

Query: 101 QQDFKDGLECAVCLSELEDGEKARLLPKCNHGFHVECIDMWFQSHSTCPLCRNPVDVERS 160
           ++    GLEC VC  +   GE  R LP CNH FH  CI  W + H +CP+CR  +  + +
Sbjct: 9   EEHVGSGLECPVCKEDYALGESVRQLP-CNHLFHDSCIVPWLEQHDSCPVCRKSLTGQNT 67

Query: 161 NNGNGEPS 168
                  +
Sbjct: 68  ATNPPGLT 75

>2ep4_A Ring finger protein 24; zinc binding, ubiquitin, E3 enzyme, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 74

 Score = 87.5 bits (217), Expect = 2e-22
 Identities = 20/67 (29%), Positives = 32/67 (47%), Gaps = 3/67 (4%)

Query: 101 QQDFKDGLECAVCLSELEDGEKARLLPKCNHGFHVECIDMWFQSHSTCPLCRNPV--DVE 158
            ++      CAVCL + +  ++  + P C H FH +C+  W +    CPLC  PV    +
Sbjct: 9   VKELNLHELCAVCLEDFKPRDELGICP-CKHAFHRKCLIKWLEVRKVCPLCNMPVLQLAQ 67

Query: 159 RSNNGNG 165
            S   +G
Sbjct: 68  LSGPSSG 74

>2ecm_A Ring finger and CHY zinc finger domain- containing protein 1; RCHY1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2jrj_A Length = 55

 Score = 84.6 bits (210), Expect = 2e-21
 Identities = 12/47 (25%), Positives = 18/47 (38%)

Query: 109 ECAVCLSELEDGEKARLLPKCNHGFHVECIDMWFQSHSTCPLCRNPV 155
            C +CL ++        +  C H  H  C +   +    CPLC  P 
Sbjct: 7   GCPICLEDIHTSRVVAHVLPCGHLLHRTCYEEMLKEGYRCPLCSGPS 53

>2ecl_A Ring-box protein 2; RNF7, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 81

 Score = 80.7 bits (199), Expect = 1e-19
 Identities = 16/50 (32%), Positives = 28/50 (56%)

Query: 110 CAVCLSELEDGEKARLLPKCNHGFHVECIDMWFQSHSTCPLCRNPVDVER 159
           C  C +E +  +   +  +CNH FH  C+ +W + ++ CPLC+    V+R
Sbjct: 29  CLRCQAENKQEDCVVVWGECNHSFHNCCMSLWVKQNNRCPLCQQDWVVQR 78

>2ecn_A Ring finger protein 141; RNF141, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 70

 Score = 79.7 bits (197), Expect = 2e-19
 Identities = 23/68 (33%), Positives = 31/68 (45%), Gaps = 7/68 (10%)

Query: 100 NQQDFKDGLECAVCLSELEDGEKARLLPKCNHGFHVECIDMWFQSHSTCPLCRNPVDV-- 157
             +   D  EC +C+    DG    +LP C H F  +CID W   H  CP+CR  +    
Sbjct: 8   RVKQLTDEEECCICM----DGRADLILP-CAHSFCQKCIDKWSDRHRNCPICRLQMTGAN 62

Query: 158 ERSNNGNG 165
           E S   +G
Sbjct: 63  ESSGPSSG 70

>1chc_A Equine herpes virus-1 ring domain; viral protein; NMR {Equid herpesvirus 1} SCOP: g.44.1.1 Length = 68

 Score = 73.6 bits (181), Expect = 3e-17
 Identities = 18/48 (37%), Positives = 26/48 (54%), Gaps = 3/48 (6%)

Query: 109 ECAVCLSELEDGEKARLLPKCNHGFHVECIDMWFQSHSTCPLCRNPVD 156
            C +CL +  +   +  LP C H F   CI  W + + TCPLC+ PV+
Sbjct: 7   RCPICLEDPSN--YSMALP-CLHAFCYVCITRWIRQNPTCPLCKVPVE 51

>3lrq_A E3 ubiquitin-protein ligase TRIM37; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: MSE; 2.29A {Homo sapiens} Length = 100

 Score = 64.1 bits (156), Expect = 2e-13
 Identities = 17/58 (29%), Positives = 26/58 (44%), Gaps = 4/58 (6%)

Query: 102 QDFKDGLECAVCLSELEDGEKARLLPKCNHGFHVECIDMWFQ-SHSTCPLCRNPVDVE 158
           +   +   C +C+ +L D   ARL P C+      CI  W     + CP CR P+ + 
Sbjct: 17  ESIAEVFRCFICMEKLRD---ARLCPHCSKLCCFSCIRRWLTEQRAQCPHCRAPLQLR 71

>2xeu_A Ring finger protein 4; transcription, zinc-finger, metal-binding; HET: SUC; 1.50A {Homo sapiens} Length = 64

 Score = 62.9 bits (153), Expect = 2e-13
 Identities = 13/55 (23%), Positives = 27/55 (49%), Gaps = 3/55 (5%)

Query: 108 LECAVCLSELEDGEKARLLP---KCNHGFHVECIDMWFQSHSTCPLCRNPVDVER 159
           + C +C+    +  +   L    +C H F  +C+    ++ +TCP CR  ++ +R
Sbjct: 4   VSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKINHKR 58

>2ea6_A Ring finger protein 4; RNF4, RES4-26, ring domain, zinc- binding domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 69

 Score = 62.6 bits (152), Expect = 3e-13
 Identities = 12/52 (23%), Positives = 25/52 (48%), Gaps = 3/52 (5%)

Query: 108 LECAVCLSELEDGEKARLLP---KCNHGFHVECIDMWFQSHSTCPLCRNPVD 156
           + C +C+    +  +   L    +C H F  +C+    ++ +TCP CR  ++
Sbjct: 16  VSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKIN 67

>3ng2_A RNF4, snurf, ring finger protein 4; ring domain, E3 ligase, ubiquitylation, sumoylation, zinc-FI metal binding protein; 1.80A {Rattus norvegicus} Length = 71

 Score = 62.2 bits (151), Expect = 6e-13
 Identities = 13/55 (23%), Positives = 27/55 (49%), Gaps = 3/55 (5%)

Query: 108 LECAVCLSELEDGEKARLLP---KCNHGFHVECIDMWFQSHSTCPLCRNPVDVER 159
           + C +C+    +  +   L    +C H F  +C+    ++ +TCP CR  ++ +R
Sbjct: 11  VSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKINHKR 65

>3dpl_R Ring-box protein 1; ubiquitin, NEDD8, cullin, HOST-virus interaction, receptor, UBL conjugation, UBL conjugation pathway, acetylation, cytoplasm; 2.60A {Homo sapiens} SCOP: g.44.1.1 PDB: 3dqv_R 3rtr_B 1u6g_B 2hye_D* 4a0c_D 4a0l_F* 1ldj_B 1ldk_C 2lgv_A Length = 106

 Score = 62.2 bits (150), Expect = 1e-12
 Identities = 14/58 (24%), Positives = 21/58 (36%)

Query: 102 QDFKDGLECAVCLSELEDGEKARLLPKCNHGFHVECIDMWFQSHSTCPLCRNPVDVER 159
                 +EC    +     E       CNH FH  CI  W ++   CPL     + ++
Sbjct: 46  HIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDNREWEFQK 103

>4a0k_B E3 ubiquitin-protein ligase RBX1; ligase-DNA-binding protein-DNA complex, DNA-binding protein- complex; HET: DNA 3DR; 5.93A {Mus musculus} Length = 117

 Score = 62.2 bits (150), Expect = 2e-12
 Identities = 14/58 (24%), Positives = 21/58 (36%)

Query: 102 QDFKDGLECAVCLSELEDGEKARLLPKCNHGFHVECIDMWFQSHSTCPLCRNPVDVER 159
                 +EC    +     E       CNH FH  CI  W ++   CPL     + ++
Sbjct: 57  HIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDNREWEFQK 114

>2ct0_A Non-SMC element 1 homolog; ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 74

 Score = 58.0 bits (140), Expect = 2e-11
 Identities = 17/63 (26%), Positives = 27/63 (42%), Gaps = 6/63 (9%)

Query: 104 FKDGL-ECAVCLSELEDGEKARLLPKCNHGFHVECIDMWFQSH--STCPLCRNPVDVERS 160
           + D +  C +C S L  G+       C    H+ C+  +FQS+    CP C +    E  
Sbjct: 11  YPDAVKICNICHSLLIQGQS---CETCGIRMHLPCVAKYFQSNAEPRCPHCNDYWPHEIP 67

Query: 161 NNG 163
            +G
Sbjct: 68  KSG 70

>2djb_A Polycomb group ring finger protein 6; PCGF6, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 72

 Score = 56.3 bits (136), Expect = 8e-11
 Identities = 16/62 (25%), Positives = 25/62 (40%), Gaps = 3/62 (4%)

Query: 102 QDFKDGLECAVCLSELEDGEKARLLPKCNHGFHVECIDMWFQSHSTCPLCRNPVDVERSN 161
            +    + C++C   L D   A  + +C H F   CI   F   + CP C   V   +  
Sbjct: 10  SELTPYILCSICKGYLID---ATTITECLHTFCKSCIVRHFYYSNRCPKCNIVVHQTQPL 66

Query: 162 NG 163
           +G
Sbjct: 67  SG 68

>3k1l_B Fancl; UBC, ring, RWD, ligase; HET: MAL CIT; 3.20A {Drosophila melanogaster} Length = 381

 Score = 59.9 bits (144), Expect = 3e-10
 Identities = 15/72 (20%), Positives = 28/72 (38%), Gaps = 15/72 (20%)

Query: 101 QQDFKDGLECAVCLSELEDGEKARLL----PKCNHGFHVECIDMWFQS-----------H 145
            ++  + L C +C +   DG +  L+     KC    H  C++ WF++            
Sbjct: 302 DEEDNEELRCNICFAYRLDGGEVPLVSCDNAKCVLKCHAVCLEEWFKTLMDGKTFLEVSF 361

Query: 146 STCPLCRNPVDV 157
             CP C+  +  
Sbjct: 362 GQCPFCKAKLST 373

>2csy_A Zinc finger protein 183-like 1; ring finger protein 161, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 81

 Score = 52.1 bits (125), Expect = 3e-09
 Identities = 11/57 (19%), Positives = 22/57 (38%), Gaps = 4/57 (7%)

Query: 100 NQQDFKDGLECAVCLSELEDGEKARLLPKCNHGFHVECIDMWFQSHSTCPLCRNPVD 156
             ++ +    C +C    ++     ++ KC H F   C    F++   C +C  P  
Sbjct: 8   GSEEEEIPFRCFICRQAFQNP----VVTKCRHYFCESCALEHFRATPRCYICDQPTG 60

>2ckl_A Polycomb group ring finger protein 4; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_B 2h0d_A Length = 108

 Score = 51.4 bits (123), Expect = 1e-08
 Identities = 15/59 (25%), Positives = 23/59 (38%), Gaps = 3/59 (5%)

Query: 102 QDFKDGLECAVCLSELEDGEKARLLPKCNHGFHVECIDMWFQSHSTCPLCRNPVDVERS 160
            +    L C +C     D   A  + +C H F   CI  + ++   CP+C   V   R 
Sbjct: 10  TELNPHLMCVLCGGYFID---ATTIIECLHSFCKTCIVRYLETSKYCPICDVQVHKTRP 65

>2d8t_A Dactylidin, ring finger protein 146; RNF146, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 71

 Score = 49.8 bits (119), Expect = 1e-08
 Identities = 15/48 (31%), Positives = 18/48 (37%), Gaps = 4/48 (8%)

Query: 108 LECAVCLSELEDGEKARLLPKCNHGFHVECIDMWFQSHSTCPLCRNPV 155
            ECA+CL           LP C H F   C+         C LCR  +
Sbjct: 16  PECAICLQTCVH---PVSLP-CKHVFCYLCVKGASWLGKRCALCRQEI 59

>2y43_A E3 ubiquitin-protein ligase RAD18; DNA repair, metal-binding, translesion synthesis, UB conjugation pathway; 1.80A {Homo sapiens} Length = 99

 Score = 50.5 bits (121), Expect = 2e-08
 Identities = 14/54 (25%), Positives = 23/54 (42%), Gaps = 3/54 (5%)

Query: 102 QDFKDGLECAVCLSELEDGEKARLLPKCNHGFHVECIDMWFQSHSTCPLCRNPV 155
           +   D L C +C         A ++P+C+H +   CI  +    + CP C   V
Sbjct: 17  KTIDDLLRCGICFEYFNI---AMIIPQCSHNYCSLCIRKFLSYKTQCPTCCVTV 67

>1v87_A Deltex protein 2; ring-H2 domain, zinc-binding domain, notch signaling, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.44.1.1 Length = 114

 Score = 51.0 bits (121), Expect = 2e-08
 Identities = 13/72 (18%), Positives = 25/72 (34%), Gaps = 19/72 (26%)

Query: 109 ECAVCLSELEDG--------------EKARLLPKCNHGFHVECIDMWFQSHS-----TCP 149
           +C +C+ +L                      L KC+H FH+ C+   + + +      CP
Sbjct: 27  DCIICMEKLAVASGYSDMTDSKALGPMVVGRLTKCSHAFHLLCLLAMYCNGNKDGSLQCP 86

Query: 150 LCRNPVDVERSN 161
            C+     +   
Sbjct: 87  SCKTIYGEKTGT 98

>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus} Length = 133

 Score = 50.9 bits (121), Expect = 2e-08
 Identities = 13/89 (14%), Positives = 30/89 (33%), Gaps = 4/89 (4%)

Query: 105 KDGLECAVCLSELEDGEKARLLP---KCNHGFHVECIDMWFQSHSTCPLCRNPVDVERSN 161
              + C +C+    +  +   L    +C H F  +C+    ++ +TCP CR  ++  +  
Sbjct: 5   SGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKIN-HKRY 63

Query: 162 NGNGEPSVEIDIQNSQESLESGYSTDSPP 190
           +     S  +      +            
Sbjct: 64  HPIYIGSGTVSCPICMDGYSEIVQNGRLI 92

>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus} Length = 133

 Score = 45.9 bits (108), Expect = 1e-06
 Identities = 13/64 (20%), Positives = 27/64 (42%), Gaps = 3/64 (4%)

Query: 99  FNQQDFKDGLECAVCLSELEDGEKARLLP---KCNHGFHVECIDMWFQSHSTCPLCRNPV 155
                    + C +C+    +  +   L    +C H F  +C+    ++ +TCP CR  +
Sbjct: 64  HPIYIGSGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKI 123

Query: 156 DVER 159
           + +R
Sbjct: 124 NHKR 127

>2y1n_A E3 ubiquitin-protein ligase; ligase-transferase complex, ubiquitin ring E3 ligase; HET: PTR; 2.00A {Homo sapiens} PDB: 2y1m_A* 4a4c_A* 4a4b_A* 1fbv_A* 3vgo_A 4a49_A* 2k4d_A 2ldr_A* Length = 389

 Score = 52.5 bits (125), Expect = 6e-08
 Identities = 13/62 (20%), Positives = 21/62 (33%), Gaps = 5/62 (8%)

Query: 100 NQQDFKDGLECAVCLSELEDGEKARLLPKCNHGFHVECIDMWFQSHS-TCPLCRNPVDVE 158
             +       C +C    +D    ++ P C H     C+  W +S    CP CR  +   
Sbjct: 325 YCEMGSTFQLCKICAENDKD---VKIEP-CGHLMCTSCLTSWQESEGQGCPFCRCEIKGT 380

Query: 159 RS 160
             
Sbjct: 381 EP 382

>3nw0_A Non-structural maintenance of chromosomes element homolog; E3 ligase, Zn, metal binding protein; 2.92A {Homo sapiens} Length = 238

 Score = 50.5 bits (120), Expect = 1e-07
 Identities = 14/53 (26%), Positives = 21/53 (39%), Gaps = 5/53 (9%)

Query: 104 FKDGLECAVCLSELEDGEKARLLPKCNHGFHVECIDMWFQSH--STCPLCRNP 154
                 C +C S L  G+       C    H+ C+  +FQS+    CP C + 
Sbjct: 177 PDAVKICNICHSLLIQGQS---CETCGIRMHLPCVAKYFQSNAEPRCPHCNDY 226

>4epo_C E3 ubiquitin-protein ligase RNF8; coiled-coil, E3 ubiquitin ligase, protein binding complex; 4.80A {Homo sapiens} Length = 149

 Score = 48.9 bits (116), Expect = 2e-07
 Identities = 15/64 (23%), Positives = 28/64 (43%), Gaps = 4/64 (6%)

Query: 92  RKIPVVAFNQQDFKDGLECAVCLSELEDGEKARLLPKCNHGFHVECIDMWFQSHSTCPLC 151
           +K  V++      ++ L+C +C     +     +   C H F   CI+ W +    CP+C
Sbjct: 49  QKEEVLSHMNDVLENELQCIICSEYFIEA----VTLNCAHSFCSYCINEWMKRKIECPIC 104

Query: 152 RNPV 155
           R  +
Sbjct: 105 RKDI 108

>2yur_A Retinoblastoma-binding protein 6; P53-associated cellular protein of testis, proliferation potential-related protein, protein P2P-R; NMR {Homo sapiens} Length = 74

 Score = 46.3 bits (110), Expect = 3e-07
 Identities = 17/72 (23%), Positives = 25/72 (34%), Gaps = 7/72 (9%)

Query: 98  AFNQQDFKDGLECAVCLSELEDGEKARLLPKCNHGFHVECIDMWF--QSHSTCPLCRNPV 155
           +       D L C +C   + D   A ++P C + +  ECI          TCP C    
Sbjct: 6   SGEDDPIPDELLCLICKDIMTD---AVVIPCCGNSYCDECIRTALLESDEHTCPTCHQND 62

Query: 156 DVER--SNNGNG 165
                 S   +G
Sbjct: 63  VSPDALSGPSSG 74

>2ct2_A Tripartite motif protein 32; zinc-finger protein HT2A, TAT- interacting protein, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 88

 Score = 46.2 bits (110), Expect = 4e-07
 Identities = 14/62 (22%), Positives = 25/62 (40%), Gaps = 5/62 (8%)

Query: 100 NQQDFKDGLECAVCLSELEDGEKA-RLLPKCNHGFHVECIDMWFQSHS---TCPLCRNPV 155
           N    ++ LEC +C+    + +   +LL  C H    +C++    S      CP C    
Sbjct: 8   NLDALREVLECPICMESFTEEQLRPKLLH-CGHTICRQCLEKLLASSINGVRCPFCSKIT 66

Query: 156 DV 157
            +
Sbjct: 67  RI 68

>1e4u_A Transcriptional repressor NOT4; gene regulation, transcriptional control; NMR {Homo sapiens} SCOP: g.44.1.1 PDB: 1ur6_B Length = 78

 Score = 45.9 bits (108), Expect = 4e-07
 Identities = 13/61 (21%), Positives = 24/61 (39%), Gaps = 1/61 (1%)

Query: 97  VAFNQQDFKDGLECAVCLSELEDGEKARLLPKCNHGFHVECI-DMWFQSHSTCPLCRNPV 155
           ++ +    +D +EC +C+  LE  +       C +     C   +    +  CP CR P 
Sbjct: 1   MSRSPDAKEDPVECPLCMEPLEIDDINFFPCTCGYQICRFCWHRIRTDENGLCPACRKPY 60

Query: 156 D 156
            
Sbjct: 61  P 61

>3ztg_A E3 ubiquitin-protein ligase RBBP6; PACT, U-BOX, mRNA processing, mRNA splicing; NMR {Homo sapiens} Length = 92

 Score = 44.4 bits (105), Expect = 2e-06
 Identities = 15/58 (25%), Positives = 22/58 (37%), Gaps = 5/58 (8%)

Query: 97  VAFNQQDFKDGLECAVCLSELEDGEKARLLPKCNHGFHVECIDMWF--QSHSTCPLCR 152
           +        D L C +C   + D   A ++P C + +  ECI          TCP C 
Sbjct: 3   LGSEDDPIPDELLCLICKDIMTD---AVVIPCCGNSYCDECIRTALLESDEHTCPTCH 57

>1jm7_B BARD1, BRCA1-associated ring domain protein 1; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1 Length = 117

 Score = 44.9 bits (106), Expect = 2e-06
 Identities = 15/78 (19%), Positives = 27/78 (34%), Gaps = 7/78 (8%)

Query: 86  LDPAILRKIPVVAFNQQDFKDGLECAVCLSELEDGEKARLLPKCNHGFHVECIDMWFQSH 145
           ++P                +  L C+ C + L +      L  C H F   C+       
Sbjct: 1   MEPDGRGAWAHSRAALDRLEKLLRCSRCTNILRE---PVCLGGCEHIFCSNCVSDCIG-- 55

Query: 146 STCPLCRNPVDVE--RSN 161
           + CP+C  P  ++  + N
Sbjct: 56  TGCPVCYTPAWIQDLKIN 73

>3l11_A E3 ubiquitin-protein ligase RNF168; E3 ligase, ring domain, DNA damage, chromatin regulator, chromosomal protein, DNA repair, metal-binding; 2.12A {Homo sapiens} Length = 115

 Score = 41.8 bits (98), Expect = 3e-05
 Identities = 15/69 (21%), Positives = 25/69 (36%), Gaps = 5/69 (7%)

Query: 108 LECAVCLSELEDGEKARLLPKCNHGFHVECI-DMWFQSHSTCPLCRNPVDVERSNNGNGE 166
            +C +C+  L +      LP CNH     C      ++   CP CR  V      +    
Sbjct: 16  CQCGICMEILVE---PVTLP-CNHTLCKPCFQSTVEKASLCCPFCRRRVSSWTRYHTRRN 71

Query: 167 PSVEIDIQN 175
             V +++  
Sbjct: 72  SLVNVELWT 80

>1rmd_A RAG1; V(D)J recombination, antibody, MAD, ring finger, zinc binuclear cluster, zinc finger, DNA-binding protein; 2.10A {Mus musculus} SCOP: g.37.1.1 g.44.1.1 Length = 116

 Score = 41.8 bits (98), Expect = 3e-05
 Identities = 17/58 (29%), Positives = 20/58 (34%), Gaps = 11/58 (18%)

Query: 102 QDFKDGLECAVCLSELEDGEKARLLP---KCNHGFHVECIDMWFQSH-STCPLCRNPV 155
             F   + C +C   L D       P    C H F   CI    +   S CP CR P 
Sbjct: 18  AHFVKSISCQICEHILAD-------PVETSCKHLFCRICILRCLKVMGSYCPSCRYPC 68

>1bor_A Transcription factor PML; proto-oncogene, nuclear bodies (PODS), leukemia, transcription regulation; NMR {Homo sapiens} SCOP: g.44.1.1 Length = 56

 Score = 40.0 bits (94), Expect = 3e-05
 Identities = 15/48 (31%), Positives = 22/48 (45%), Gaps = 7/48 (14%)

Query: 108 LECAVCLSELEDGEKARLLPKCNHGFHVECIDMWFQSHSTCPLCRNPV 155
           L C  C +E +     +LLP C H     C++    S   CP+C+ P 
Sbjct: 7   LRCQQCQAEAKC---PKLLP-CLHTLCSGCLE---ASGMQCPICQAPW 47

>3hcs_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.20A {Homo sapiens} Length = 170

 Score = 42.8 bits (100), Expect = 4e-05
 Identities = 12/59 (20%), Positives = 19/59 (32%), Gaps = 5/59 (8%)

Query: 101 QQDFKDGLECAVCLSELEDGEKARLLPKCNHGFHVECIDMWFQSH-STCPLCRNPVDVE 158
               +   EC +CL  L +     +   C H F   CI    +     CP+    +   
Sbjct: 12  DPPLESKYECPICLMALREA----VQTPCGHRFCKACIIKSIRDAGHKCPVDNEILLEN 66

>2ecy_A TNF receptor-associated factor 3; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 66

 Score = 39.8 bits (93), Expect = 5e-05
 Identities = 12/56 (21%), Positives = 19/56 (33%), Gaps = 5/56 (8%)

Query: 102 QDFKDGLECAVCLSELEDGEKARLLPKCNHGFHVECIDMWFQSHS-TCPLCRNPVD 156
           +  +D  +C  C   L          +C H F   C+     S S  C  C+  + 
Sbjct: 10  KTVEDKYKCEKCHLVLCS----PKQTECGHRFCESCMAALLSSSSPKCTACQESIV 61

>3hct_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 3hcu_A 2eci_A 2jmd_A Length = 118

 Score = 40.6 bits (95), Expect = 7e-05
 Identities = 14/59 (23%), Positives = 20/59 (33%), Gaps = 5/59 (8%)

Query: 101 QQDFKDGLECAVCLSELEDGEKARLLPKCNHGFHVECIDMWFQSH-STCPLCRNPVDVE 158
               +   EC +CL  L +   A   P C H F   CI    +     CP+    +   
Sbjct: 12  DPPLESKYECPICLMALRE---AVQTP-CGHRFCKACIIKSIRDAGHKCPVDNEILLEN 66

>3fl2_A E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA damage, DNA repair, ring finger domain, metal binding, DNA replication; 1.75A {Homo sapiens} Length = 124

 Score = 40.7 bits (95), Expect = 7e-05
 Identities = 11/55 (20%), Positives = 21/55 (38%), Gaps = 5/55 (9%)

Query: 102 QDFKDGLECAVCLSELEDGEKARLLPKCNHGFHVECIDMWFQSHS-TCPLCRNPV 155
              ++  +C  C   +           C H    +C+D  F++   +CP CR  +
Sbjct: 47  SKVEETFQCICCQELVFR---PITTV-CQHNVCKDCLDRSFRAQVFSCPACRYDL 97

>1g25_A CDK-activating kinase assembly factor MAT1; ring finger (C3HC4), metal binding protein; NMR {Homo sapiens} SCOP: g.44.1.1 Length = 65

 Score = 38.8 bits (90), Expect = 1e-04
 Identities = 13/52 (25%), Positives = 20/52 (38%), Gaps = 2/52 (3%)

Query: 106 DGLECAVCLSELEDGEKARLL-PKCNHGFHVECIDMWFQSHS-TCPLCRNPV 155
           D   C  C +        +L+   C H     C+D+ F   +  CP C  P+
Sbjct: 2   DDQGCPRCKTTKYRNPSLKLMVNVCGHTLCESCVDLLFVRGAGNCPECGTPL 53

>2ckl_B Ubiquitin ligase protein RING2; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_C 2h0d_B Length = 165

 Score = 40.3 bits (94), Expect = 2e-04
 Identities = 17/65 (26%), Positives = 28/65 (43%), Gaps = 4/65 (6%)

Query: 97  VAFNQQDFKDGLECAVCLSELEDGEKARLLPKCNHGFHVECIDMWFQSH-STCPLCRNPV 155
           +  + +     L C +CL  L++        +C H F  +CI    +S    CP CR  +
Sbjct: 44  IVVSPRSLHSELMCPICLDMLKN---TMTTKECLHRFCADCIITALRSGNKECPTCRKKL 100

Query: 156 DVERS 160
             +RS
Sbjct: 101 VSKRS 105

>2vje_A E3 ubiquitin-protein ligase MDM2; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_A* 2hdp_A Length = 64

 Score = 37.9 bits (88), Expect = 2e-04
 Identities = 10/57 (17%), Positives = 19/57 (33%), Gaps = 5/57 (8%)

Query: 102 QDFKDGLECAVCLSELEDGEKARLLP-KCNHGFH-VECIDMWFQSHSTCPLCRNPVD 156
                   C +C    ++     ++  K  H      C     + +  CP+CR P+ 
Sbjct: 3   LPLNAIEPCVICQGRPKN---GCIVHGKTGHLMACFTCAKKLKKRNKPCPVCRQPIQ 56

>2vje_B MDM4 protein; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_B* Length = 63

 Score = 36.7 bits (85), Expect = 5e-04
 Identities = 9/49 (18%), Positives = 20/49 (40%), Gaps = 3/49 (6%)

Query: 109 ECAVCLSELEDGEKARLLPKCNHGFH-VECIDMWFQSHSTCPLCRNPVD 156
            C++C     DG    +  +  H      C     ++ ++CP+C+  + 
Sbjct: 9   PCSLCEKRPRDG--NIIHGRTGHLVTCFHCARRLKKAGASCPICKKEIQ 55

>3vk6_A E3 ubiquitin-protein ligase hakai; HYB, phosphotyrosine binding domain; 1.90A {Mus musculus} Length = 101

 Score = 37.9 bits (87), Expect = 6e-04
 Identities = 16/58 (27%), Positives = 25/58 (43%), Gaps = 5/58 (8%)

Query: 110 CAVCLSELEDGEKARLLPKCNHGFHVECIDMWF-QSHSTCPLCRNPV-DVERSNNGNG 165
           C  C   L      R++P C H F  +C  +   +    CP C +PV  +E+   G+ 
Sbjct: 4   CDKC--GLPIKVYGRMIP-CKHVFCYDCAILHEKKGDKMCPGCSDPVQRIEQCTRGSL 58

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	309
2l0b_A	91	E3 ubiquitin-protein ligase praja-1; zinc finger,	99.66
1x4j_A	75	Ring finger protein 38; structural genomics, NPPSF	99.6
1iym_A	55	EL5; ring-H2 finger, ubiquitin ligase, DNA binding	99.54
2ep4_A	74	Ring finger protein 24; zinc binding, ubiquitin, E	99.51
2kiz_A	69	E3 ubiquitin-protein ligase arkadia; ring-H2 finge	99.51
2ect_A	78	Ring finger protein 126; metal binding protein, st	99.5
1v87_A	114	Deltex protein 2; ring-H2 domain, zinc-binding dom	99.49
2ecl_A	81	Ring-box protein 2; RNF7, ring domian, zinc-bindin	99.46
2ea6_A	69	Ring finger protein 4; RNF4, RES4-26, ring domain,	99.36
2ecm_A	55	Ring finger and CHY zinc finger domain- containing	99.36
3ng2_A	71	RNF4, snurf, ring finger protein 4; ring domain, E	99.36
3dpl_R	106	Ring-box protein 1; ubiquitin, NEDD8, cullin, HOST	99.33
2xeu_A	64	Ring finger protein 4; transcription, zinc-finger,	99.32
2ecn_A	70	Ring finger protein 141; RNF141, ring domain, zinc	99.29
2d8s_A	80	Cellular modulator of immune recognition; C-MIR, m	99.29
2d8t_A	71	Dactylidin, ring finger protein 146; RNF146, ring	99.28
2djb_A	72	Polycomb group ring finger protein 6; PCGF6, ring	99.27
2ct2_A	88	Tripartite motif protein 32; zinc-finger protein H	99.27
1chc_A	68	Equine herpes virus-1 ring domain; viral protein;	99.25
4a0k_B	117	E3 ubiquitin-protein ligase RBX1; ligase-DNA-bindi	99.24
2ysl_A	73	Tripartite motif-containing protein 31; ring-type	99.22
2csy_A	81	Zinc finger protein 183-like 1; ring finger protei	99.21
2ecy_A	66	TNF receptor-associated factor 3; metal binding pr	99.2
2ct0_A	74	Non-SMC element 1 homolog; ring domain, structural	99.19
2yur_A	74	Retinoblastoma-binding protein 6; P53-associated c	99.18
4ayc_A	138	E3 ubiquitin-protein ligase RNF8; DNA damage, K63	99.16
2ecv_A	85	Tripartite motif-containing protein 5; metal bindi	99.14
2ecw_A	85	Tripartite motif-containing protein 30; metal bind	99.13
2egp_A	79	Tripartite motif-containing protein 34; ZF-C3HC4 d	99.13
1t1h_A	78	Gspef-atpub14, armadillo repeat containing protein	99.12
2ysj_A	63	Tripartite motif-containing protein 31; ring-type	99.1
4ap4_A	133	E3 ubiquitin ligase RNF4; ligase-signalling protei	99.09
3lrq_A	100	E3 ubiquitin-protein ligase TRIM37; structural gen	99.09
2ecj_A	58	Tripartite motif-containing protein 39; TRIM39, ri	99.07
2y43_A	99	E3 ubiquitin-protein ligase RAD18; DNA repair, met	99.05
3ztg_A	92	E3 ubiquitin-protein ligase RBBP6; PACT, U-BOX, mR	99.05
1g25_A	65	CDK-activating kinase assembly factor MAT1; ring f	99.04
2ckl_A	108	Polycomb group ring finger protein 4; BMI1, RING1B	99.04
4ap4_A	133	E3 ubiquitin ligase RNF4; ligase-signalling protei	99.03
2ckl_B	165	Ubiquitin ligase protein RING2; BMI1, RING1B, poly	99.02
3fl2_A	124	E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA	98.99
1jm7_A	112	BRCA1, breast cancer type 1 susceptibility protein	98.95
3hct_A	118	TNF receptor-associated factor 6; cross-brace, bet	98.92
1z6u_A	150	NP95-like ring finger protein isoform B; structura	98.9
3l11_A	115	E3 ubiquitin-protein ligase RNF168; E3 ligase, rin	98.9
1bor_A	56	Transcription factor PML; proto-oncogene, nuclear	98.89
1e4u_A	78	Transcriptional repressor NOT4; gene regulation, t	98.88
2vje_A	64	E3 ubiquitin-protein ligase MDM2; proto-oncogene,	98.85
1rmd_A	116	RAG1; V(D)J recombination, antibody, MAD, ring fin	98.85
2kr4_A	85	Ubiquitin conjugation factor E4 B; U-BOX, UFD2, ri	98.82
2y1n_A	389	E3 ubiquitin-protein ligase; ligase-transferase co	98.82
2kre_A	100	Ubiquitin conjugation factor E4 B; U-box domain, E	98.81
2vje_B	63	MDM4 protein; proto-oncogene, phosphorylation, alt	98.79
1wgm_A	98	Ubiquitin conjugation factor E4A; ubiquitinating e	98.79
3k1l_B	381	Fancl; UBC, ring, RWD, ligase; HET: MAL CIT; 3.20A	98.79
3knv_A	141	TNF receptor-associated factor 2; cross-brace, alt	98.77
1jm7_B	117	BARD1, BRCA1-associated ring domain protein 1; rin	98.71
4ic3_A	74	E3 ubiquitin-protein ligase XIAP; ring domain, zin	98.71
1vyx_A	60	ORF K3, K3RING; zinc-binding protein, ring domain,	98.61
3hcs_A	170	TNF receptor-associated factor 6; cross-brace, bet	98.59
2yu4_A	94	E3 SUMO-protein ligase NSE2; SP-ring domain, struc	98.59
2ea5_A	68	Cell growth regulator with ring finger domain prot	98.56
2c2l_A	281	CHIP, carboxy terminus of HSP70-interacting protei	98.55
2ecg_A	75	Baculoviral IAP repeat-containing protein 4; BIRC4	98.5
1wim_A	94	KIAA0161 protein; ring finger domain, UBCM4-intera	98.45
2f42_A	179	STIP1 homology and U-box containing protein 1; cha	98.41
2yho_A	79	E3 ubiquitin-protein ligase mylip; ligase, E2 liga	98.38
3t6p_A	345	Baculoviral IAP repeat-containing protein 2; ring,	98.23
2bay_A	61	PRE-mRNA splicing factor PRP19; U-BOX, ubiquitin l	98.18
3htk_C	267	E3 SUMO-protein ligase MMS21; SUMO E3 ligase, SPL-	98.09
3nw0_A	238	Non-structural maintenance of chromosomes element	98.03
3vk6_A	101	E3 ubiquitin-protein ligase hakai; HYB, phosphotyr	97.87
2lri_C	66	Autoimmune regulator; Zn binding protein domain, a	95.09
2ko5_A	99	Ring finger protein Z; lassa fever virus-Z, negati	93.85
1we9_A	64	PHD finger family protein; structural genomics, PH	92.69
2l5u_A	61	Chromodomain-helicase-DNA-binding protein 4; CHD4,	92.27
2k16_A	75	Transcription initiation factor TFIID subunit 3; p	91.66
3lqh_A	183	Histone-lysine N-methyltransferase MLL; PHD finger	91.35
2jun_A	101	Midline-1; B-BOX, TRIM, ring finger, alternative s	91.24
1wil_A	89	KIAA1045 protein; ring finger domain, structural g	90.46
3u5n_A	207	E3 ubiquitin-protein ligase TRIM33; TRIM33, PHD, b	89.45
1mm2_A	61	MI2-beta; PHD, zinc finger, protein scaffold, DNA	88.75
3o36_A	184	Transcription intermediary factor 1-alpha; TRIM24,	88.26
1wep_A	79	PHF8; structural genomics, PHD domain, riken struc	88.22
2xb1_A	105	Pygopus homolog 2, B-cell CLL/lymphoma 9-like Pro;	86.97
2yt5_A	66	Metal-response element-binding transcription facto	86.81
2l43_A	88	N-teminal domain from histone H3.3, linker, PHD1 f	86.72
2kgg_A	52	Histone demethylase jarid1A; PHD finger, histone m	86.61
1wee_A	72	PHD finger family protein; structural genomics, PH	86.54
2yql_A	56	PHD finger protein 21A; PHD domain, structural gen	86.48
1wev_A	88	Riken cDNA 1110020M19; structural genomics, PHD do	85.44
2ri7_A	174	Nucleosome-remodeling factor subunit BPTF; zinc fi	85.03
2ku3_A	71	Bromodomain-containing protein 1; PHD finger, chro	84.08
2vpb_A	65	Hpygo1, pygopus homolog 1; gene regulation, WNT si	83.56
2lbm_A	142	Transcriptional regulator ATRX; metal binding prot	83.03
1xwh_A	66	Autoimmune regulator; PHD domain, Zn binding domai	82.93
1wem_A	76	Death associated transcription factor 1; structura	82.56
1fp0_A	88	KAP-1 corepressor; PHD domain, C3HC4 type zinc bin	82.39
1weu_A	91	Inhibitor of growth family, member 4; structural g	81.49
1f62_A	51	Transcription factor WSTF; Zn-finger; NMR {Homo sa	81.04
2puy_A	60	PHD finger protein 21A; PHD finger, histone CODE,	81.01
3ql9_A	129	Transcriptional regulator ATRX; zinc finger, trans	80.58
3v43_A	112	Histone acetyltransferase KAT6A; MOZ, PHD finger,	80.37

>2l0b_A E3 ubiquitin-protein ligase praja-1; zinc finger, NESG, structural genomics, PSI-2, protein struc initiative; NMR {Homo sapiens}

Probab=99.66  E-value=6.2e-17  Score=125.44  Aligned_cols=75  Identities=28%  Similarity=0.680  Sum_probs=66.5

Q ss_pred             hhcCCCHHHHhcCCceeeccCC--CCCCceecccccccccCcceeecCCCCCccchhHHHHHHhcCCCCcccCccccc
Q 021708           82 LRAGLDPAILRKIPVVAFNQQD--FKDGLECAVCLSELEDGEKARLLPKCNHGFHVECIDMWFQSHSTCPLCRNPVDV  157 (309)
Q Consensus        82 ~~~g~~~~~~~~lp~~~~~~~~--~~~~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~Ci~~Wl~~~~~CP~CR~~i~~  157 (309)
                      ...+++++.+..||.+.+....  ..++..|+||+++|..++.++.++ |+|.||..||..|+..+.+||+||..+..
T Consensus        13 ~~~~~s~~~i~~lp~~~~~~~~~~~~~~~~C~IC~~~~~~~~~~~~l~-C~H~Fh~~Ci~~wl~~~~~CP~Cr~~~~~   89 (91)
T 2l0b_A           13 ANPPASKESIDALPEILVTEDHGAVGQEMCCPICCSEYVKGDVATELP-CHHYFHKPCVSIWLQKSGTCPVCRCMFPP   89 (91)
T ss_dssp             CCCCCCHHHHHTSCEEECCTTCSSSSSCSEETTTTEECCTTCEEEEET-TTEEEEHHHHHHHHTTTCBCTTTCCBSSC
T ss_pred             CCCCCCHHHHHhCCCeeecccccccCCCCCCcccChhhcCCCcEEecC-CCChHHHHHHHHHHHcCCcCcCcCccCCC
Confidence            3478999999999999987654  445678999999999999899998 99999999999999999999999998864

>1x4j_A Ring finger protein 38; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.60  E-value=4.1e-16  Score=116.15  Aligned_cols=67  Identities=34%  Similarity=0.885  Sum_probs=57.7

Q ss_pred             HhcCCceeeccCC-CCCCceecccccccccCcceeecCCCCCccchhHHHHHHhcCCCCcccCcccccC
Q 021708           91 LRKIPVVAFNQQD-FKDGLECAVCLSELEDGEKARLLPKCNHGFHVECIDMWFQSHSTCPLCRNPVDVE  158 (309)
Q Consensus        91 ~~~lp~~~~~~~~-~~~~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~Ci~~Wl~~~~~CP~CR~~i~~~  158 (309)
                      +..||.+.++... ..++.+|+||+++|..++.++.++ |+|.||..||..|+..+.+||+||..+...
T Consensus         6 i~~lp~~~~~~~~~~~~~~~C~IC~~~~~~~~~~~~l~-C~H~fh~~Ci~~w~~~~~~CP~Cr~~~~~~   73 (75)
T 1x4j_A            6 SGQLPSYRFNPNNHQSEQTLCVVCMCDFESRQLLRVLP-CNHEFHAKCVDKWLKANRTCPICRADSGPS   73 (75)
T ss_dssp             CSSCCCEEBCSSSCSSSCCEETTTTEECCBTCEEEEET-TTEEEETTHHHHHHHHCSSCTTTCCCCCCC
T ss_pred             HhhCCcEEecCccccCCCCCCeECCcccCCCCeEEEEC-CCCHhHHHHHHHHHHcCCcCcCcCCcCCCC
Confidence            4568888887654 345678999999999988889998 999999999999999999999999988754

>1iym_A EL5; ring-H2 finger, ubiquitin ligase, DNA binding protein; NMR {Oryza sativa} SCOP: g.44.1.1

Probab=99.54  E-value=3.1e-15  Score=104.46  Aligned_cols=52  Identities=73%  Similarity=1.482  Sum_probs=47.0

Q ss_pred             CCCceecccccccccCcceeecCCCCCccchhHHHHHHhcCCCCcccCcccc
Q 021708          105 KDGLECAVCLSELEDGEKARLLPKCNHGFHVECIDMWFQSHSTCPLCRNPVD  156 (309)
Q Consensus       105 ~~~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~Ci~~Wl~~~~~CP~CR~~i~  156 (309)
                      +++.+|+||+++|..++.+..++.|+|.||..||..|+..+.+||+||..+.
T Consensus         3 ~~~~~C~IC~~~~~~~~~~~~~~~C~H~f~~~Ci~~w~~~~~~CP~Cr~~~~   54 (55)
T 1iym_A            3 DDGVECAVCLAELEDGEEARFLPRCGHGFHAECVDMWLGSHSTCPLCRLTVV   54 (55)
T ss_dssp             CCSCCCTTTCCCCCTTSCCEECSSSCCEECTTHHHHTTTTCCSCSSSCCCSC
T ss_pred             CCCCcCccCCccccCCCceEECCCCCCcccHHHHHHHHHcCCcCcCCCCEeE
Confidence            4567899999999998888888779999999999999999999999998874

>2ep4_A Ring finger protein 24; zinc binding, ubiquitin, E3 enzyme, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.51  E-value=1.4e-14  Score=107.35  Aligned_cols=55  Identities=33%  Similarity=0.800  Sum_probs=48.7

Q ss_pred             CCCCceecccccccccCcceeecCCCCCccchhHHHHHHhcCCCCcccCcccccCC
Q 021708          104 FKDGLECAVCLSELEDGEKARLLPKCNHGFHVECIDMWFQSHSTCPLCRNPVDVER  159 (309)
Q Consensus       104 ~~~~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~Ci~~Wl~~~~~CP~CR~~i~~~~  159 (309)
                      ...+..|+||+++|..++.++.++ |+|.||..||..|+..+.+||+||..+....
T Consensus        12 ~~~~~~C~IC~~~~~~~~~~~~~~-C~H~f~~~Ci~~~~~~~~~CP~Cr~~~~~~~   66 (74)
T 2ep4_A           12 LNLHELCAVCLEDFKPRDELGICP-CKHAFHRKCLIKWLEVRKVCPLCNMPVLQLA   66 (74)
T ss_dssp             CCCSCBCSSSCCBCCSSSCEEEET-TTEEEEHHHHHHHHHHCSBCTTTCCBCSSCC
T ss_pred             CCCCCCCcCCCcccCCCCcEEEcC-CCCEecHHHHHHHHHcCCcCCCcCccccccc
Confidence            345678999999999888888888 9999999999999998899999999987543

>2kiz_A E3 ubiquitin-protein ligase arkadia; ring-H2 finger, E3 ligase, Zn binding domain, metal zinc, zinc-finger, metal binding protein; NMR {Homo sapiens}

Probab=99.51  E-value=1.6e-14  Score=105.56  Aligned_cols=55  Identities=40%  Similarity=0.946  Sum_probs=48.7

Q ss_pred             CCCCceecccccccccCcceeecCCCCCccchhHHHHHHhcCCCCcccCcccccCC
Q 021708          104 FKDGLECAVCLSELEDGEKARLLPKCNHGFHVECIDMWFQSHSTCPLCRNPVDVER  159 (309)
Q Consensus       104 ~~~~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~Ci~~Wl~~~~~CP~CR~~i~~~~  159 (309)
                      ......|+||++.|..++.++.++ |+|.||..||..|+..+.+||+||..+....
T Consensus        11 ~~~~~~C~IC~~~~~~~~~~~~~~-C~H~fc~~Ci~~~~~~~~~CP~Cr~~~~~~~   65 (69)
T 2kiz_A           11 EDTEEKCTICLSILEEGEDVRRLP-CMHLFHQVCVDQWLITNKKCPICRVDIEAQL   65 (69)
T ss_dssp             TTCCCSBTTTTBCCCSSSCEEECT-TSCEEEHHHHHHHHHHCSBCTTTCSBSCSCC
T ss_pred             CCCCCCCeeCCccccCCCcEEEeC-CCCHHHHHHHHHHHHcCCCCcCcCccccCcC
Confidence            345678999999998888888898 9999999999999999999999999987643

>2ect_A Ring finger protein 126; metal binding protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}

Probab=99.50  E-value=1.5e-14  Score=108.21  Aligned_cols=56  Identities=43%  Similarity=0.981  Sum_probs=49.4

Q ss_pred             CCCCCceecccccccccCcceeecCCCCCccchhHHHHHHhcCCCCcccCcccccCC
Q 021708          103 DFKDGLECAVCLSELEDGEKARLLPKCNHGFHVECIDMWFQSHSTCPLCRNPVDVER  159 (309)
Q Consensus       103 ~~~~~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~Ci~~Wl~~~~~CP~CR~~i~~~~  159 (309)
                      ...++.+|+||++.|...+.++.++ |+|.||..||..|+..+.+||+||..+....
T Consensus        11 ~~~~~~~C~IC~~~~~~~~~~~~~~-C~H~fc~~Ci~~~~~~~~~CP~Cr~~~~~~~   66 (78)
T 2ect_A           11 HVGSGLECPVCKEDYALGESVRQLP-CNHLFHDSCIVPWLEQHDSCPVCRKSLTGQN   66 (78)
T ss_dssp             TSSSSCCCTTTTSCCCTTSCEEECT-TSCEEETTTTHHHHTTTCSCTTTCCCCCCSC
T ss_pred             cCCCCCCCeeCCccccCCCCEEEeC-CCCeecHHHHHHHHHcCCcCcCcCCccCCcc
Confidence            3445678999999999888888888 9999999999999999999999999987643

>1v87_A Deltex protein 2; ring-H2 domain, zinc-binding domain, notch signaling, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.44.1.1

Probab=99.49  E-value=3.5e-14  Score=113.72  Aligned_cols=63  Identities=24%  Similarity=0.590  Sum_probs=50.3

Q ss_pred             CCceecccccccccCc---------------ceeecCCCCCccchhHHHHHH-----hcCCCCcccCcccccCCCCCCCC
Q 021708          106 DGLECAVCLSELEDGE---------------KARLLPKCNHGFHVECIDMWF-----QSHSTCPLCRNPVDVERSNNGNG  165 (309)
Q Consensus       106 ~~~~C~ICl~~~~~~~---------------~~~~lp~C~H~FH~~Ci~~Wl-----~~~~~CP~CR~~i~~~~~~~~~~  165 (309)
                      .+.+|+||+++|....               .+++++ |+|.||..||..|+     ..+.+||+||..+....+++..+
T Consensus        24 ~~~~C~ICl~~~~~~~~~~~~~~~~~~~~~~~~~~~~-C~H~Fh~~Ci~~wl~~~~~~~~~~CP~CR~~~~~~~g~qp~g  102 (114)
T 1v87_A           24 PEEDCIICMEKLAVASGYSDMTDSKALGPMVVGRLTK-CSHAFHLLCLLAMYCNGNKDGSLQCPSCKTIYGEKTGTQPWG  102 (114)
T ss_dssp             CSCEETTTTEETTSCCSTTTTCCCSSSCSSCCEEESS-SCCEECHHHHHHHHHHTCCSSCCBCTTTCCBSSSCSSSCTTS
T ss_pred             CCCcCccCChhhcCcccccccccccccCcccceecCC-CCCcccHHHHHHHHHcccCCCCCcCCCCCCccCCCCCCCCCC
Confidence            3468999999997643               334676 99999999999999     45778999999998887777666


Q ss_pred             CCCc
Q 021708          166 EPSV  169 (309)
Q Consensus       166 ~~~~  169 (309)
                      ....
T Consensus       103 ~m~~  106 (114)
T 1v87_A          103 KMEV  106 (114)
T ss_dssp             SCCC
T ss_pred             eEEE
Confidence            6543

>2ecl_A Ring-box protein 2; RNF7, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.46  E-value=2.1e-14  Score=108.91  Aligned_cols=53  Identities=30%  Similarity=0.795  Sum_probs=42.9

Q ss_pred             CCceeccccccccc-----------CcceeecCCCCCccchhHHHHHHhcCCCCcccCcccccC
Q 021708          106 DGLECAVCLSELED-----------GEKARLLPKCNHGFHVECIDMWFQSHSTCPLCRNPVDVE  158 (309)
Q Consensus       106 ~~~~C~ICl~~~~~-----------~~~~~~lp~C~H~FH~~Ci~~Wl~~~~~CP~CR~~i~~~  158 (309)
                      ++..|+||+++|..           ++.++.++.|+|.||.+||++||..+.+||+||..+...
T Consensus        14 ~~~~C~IC~~~~~~~C~iC~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl~~~~~CP~CR~~~~~~   77 (81)
T 2ecl_A           14 ECDTCAICRVQVMDACLRCQAENKQEDCVVVWGECNHSFHNCCMSLWVKQNNRCPLCQQDWVVQ   77 (81)
T ss_dssp             CCSCBTTTTBCTTSCCTTHHHHTCTTTCCEEEETTSCEEEHHHHHHHTTTCCBCTTTCCBCCEE
T ss_pred             CCCCCcccChhhhccCcccccccCCCceEEEeCCCCCccChHHHHHHHHhCCCCCCcCCCcchh
Confidence            34568888888854           455666666999999999999999999999999988643

>2ea6_A Ring finger protein 4; RNF4, RES4-26, ring domain, zinc- binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.36  E-value=3.2e-13  Score=98.00  Aligned_cols=52  Identities=21%  Similarity=0.586  Sum_probs=44.0

Q ss_pred             CCCCceecccccccccC----cceeecCCCCCccchhHHHHHHhcCCCCcccCcccc
Q 021708          104 FKDGLECAVCLSELEDG----EKARLLPKCNHGFHVECIDMWFQSHSTCPLCRNPVD  156 (309)
Q Consensus       104 ~~~~~~C~ICl~~~~~~----~~~~~lp~C~H~FH~~Ci~~Wl~~~~~CP~CR~~i~  156 (309)
                      ..+...|+||++.|...    ..+..++ |+|.||..||..|+..+.+||+||..+.
T Consensus        12 ~~~~~~C~IC~~~~~~~~~~~~~~~~~~-CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~   67 (69)
T 2ea6_A           12 PSGTVSCPICMDGYSEIVQNGRLIVSTE-CGHVFCSQCLRDSLKNANTCPTCRKKIN   67 (69)
T ss_dssp             TTCCCCCTTTCCCHHHHTTTTCCEEECS-SSCEEEHHHHHHHHHHCSSCTTTCCCCC
T ss_pred             CCCCCCCcccCccccccccccCCeEeCC-CCChhcHHHHHHHHHcCCCCCCCCCccC
Confidence            34567899999999763    3346776 9999999999999999999999999875

>2ecm_A Ring finger and CHY zinc finger domain- containing protein 1; RCHY1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2jrj_A

Probab=99.36  E-value=2.8e-13  Score=94.26  Aligned_cols=50  Identities=30%  Similarity=0.810  Sum_probs=42.7

Q ss_pred             CCceecccccccccCc-ceeecCCCCCccchhHHHHHHhcCCCCcccCcccc
Q 021708          106 DGLECAVCLSELEDGE-KARLLPKCNHGFHVECIDMWFQSHSTCPLCRNPVD  156 (309)
Q Consensus       106 ~~~~C~ICl~~~~~~~-~~~~lp~C~H~FH~~Ci~~Wl~~~~~CP~CR~~i~  156 (309)
                      ++.+|+||+++|..++ .++.++ |+|.||..||..|+..+.+||+||..+.
T Consensus         4 ~~~~C~IC~~~~~~~~~~~~~~~-CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~   54 (55)
T 2ecm_A            4 GSSGCPICLEDIHTSRVVAHVLP-CGHLLHRTCYEEMLKEGYRCPLCSGPSS   54 (55)
T ss_dssp             CCCSCTTTCCCCCTTTSCEEECT-TSCEEETTHHHHHHHHTCCCTTSCCSSC
T ss_pred             CCCcCcccChhhcCCCcCeEecC-CCCcccHHHHHHHHHcCCcCCCCCCcCC
Confidence            4567999999996544 466776 9999999999999998899999998774

>3ng2_A RNF4, snurf, ring finger protein 4; ring domain, E3 ligase, ubiquitylation, sumoylation, zinc-FI metal binding protein; 1.80A {Rattus norvegicus}

Probab=99.36  E-value=2.8e-13  Score=99.13  Aligned_cols=53  Identities=21%  Similarity=0.594  Sum_probs=44.9

Q ss_pred             CCCceecccccccccC----cceeecCCCCCccchhHHHHHHhcCCCCcccCcccccC
Q 021708          105 KDGLECAVCLSELEDG----EKARLLPKCNHGFHVECIDMWFQSHSTCPLCRNPVDVE  158 (309)
Q Consensus       105 ~~~~~C~ICl~~~~~~----~~~~~lp~C~H~FH~~Ci~~Wl~~~~~CP~CR~~i~~~  158 (309)
                      .++.+|+||++.|...    +.+..++ |||.||..||..|+..+.+||+||..+...
T Consensus         8 ~~~~~C~IC~~~~~~~~~~~~~~~~~~-CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~   64 (71)
T 3ng2_A            8 SGTVSCPICMDGYSEIVQNGRLIVSTE-CGHVFCSQCLRDSLKNANTCPTCRKKINHK   64 (71)
T ss_dssp             TTCCBCTTTCCBHHHHHTTTCCEEECT-TSCEEEHHHHHHHHHHCSBCTTTCCBCCCC
T ss_pred             CCCCCCcccChhhhccccccCCeEeCC-CCChHhHHHHHHHHHcCCCCCCCCCccChh
Confidence            4567899999998763    4456776 999999999999999999999999988744

>3dpl_R Ring-box protein 1; ubiquitin, NEDD8, cullin, HOST-virus interaction, receptor, UBL conjugation, UBL conjugation pathway, acetylation, cytoplasm; 2.60A {Homo sapiens} SCOP: g.44.1.1 PDB: 3dqv_R 3rtr_B 4f52_B 1u6g_B 2hye_D* 4a0c_D 4a0l_F* 1ldj_B 1ldk_C 2lgv_A

Probab=99.33  E-value=6.4e-13  Score=106.01  Aligned_cols=51  Identities=31%  Similarity=0.690  Sum_probs=42.3

Q ss_pred             CCceecccccccccC--------------c-ceeecCCCCCccchhHHHHHHhcCCCCcccCccccc
Q 021708          106 DGLECAVCLSELEDG--------------E-KARLLPKCNHGFHVECIDMWFQSHSTCPLCRNPVDV  157 (309)
Q Consensus       106 ~~~~C~ICl~~~~~~--------------~-~~~~lp~C~H~FH~~Ci~~Wl~~~~~CP~CR~~i~~  157 (309)
                      +++.|+||++.|...              + .++.++ |+|.||..||+.||..+.+||+||..+..
T Consensus        36 ~~d~CaIC~~~~~~~c~~C~~~~~~~~~~~~~~~~~~-C~H~FH~~Ci~~Wl~~~~~CP~Cr~~~~~  101 (106)
T 3dpl_R           36 VVDNCAICRNHIMDLCIECQANQASATSEECTVAWGV-CNHAFHFHCISRWLKTRQVCPLDNREWEF  101 (106)
T ss_dssp             CSCCCSSSCSCTTSCCTTHHHHTTCC---CCCEEEET-TSCEEEHHHHHHHHTTCSBCSSSCSBCCE
T ss_pred             CCCCCccCChhHhCcCchhhccccccCCccceEeecc-cCcEECHHHHHHHHHcCCcCcCCCCccee
Confidence            456799999999854              1 245566 99999999999999999999999998643

>2xeu_A Ring finger protein 4; transcription, zinc-finger, metal-binding; HET: SUC; 1.50A {Homo sapiens}

Probab=99.32  E-value=5e-13  Score=95.54  Aligned_cols=52  Identities=21%  Similarity=0.587  Sum_probs=43.9

Q ss_pred             CCceecccccccccC----cceeecCCCCCccchhHHHHHHhcCCCCcccCcccccC
Q 021708          106 DGLECAVCLSELEDG----EKARLLPKCNHGFHVECIDMWFQSHSTCPLCRNPVDVE  158 (309)
Q Consensus       106 ~~~~C~ICl~~~~~~----~~~~~lp~C~H~FH~~Ci~~Wl~~~~~CP~CR~~i~~~  158 (309)
                      ++.+|+||++.+...    +.+..++ |||.||..||..|+..+.+||+||..+...
T Consensus         2 ~~~~C~IC~~~~~~~~~~~~~~~~~~-CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~   57 (64)
T 2xeu_A            2 AMVSCPICMDGYSEIVQNGRLIVSTE-CGHVFCSQCLRDSLKNANTCPTCRKKINHK   57 (64)
T ss_dssp             CCCBCTTTCCBHHHHHHTTCCEEEET-TSCEEEHHHHHHHHHHCSBCTTTCCBCTTT
T ss_pred             CCCCCCccChhhhCccccCCCEEeCC-CCCchhHHHHHHHHHcCCCCCCCCccCCcc
Confidence            356899999999753    3456776 999999999999999999999999988753

>2ecn_A Ring finger protein 141; RNF141, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.29  E-value=9.4e-13  Score=96.30  Aligned_cols=50  Identities=38%  Similarity=0.959  Sum_probs=43.4

Q ss_pred             CCCCceecccccccccCcceeecCCCCCccchhHHHHHHhcCCCCcccCcccccC
Q 021708          104 FKDGLECAVCLSELEDGEKARLLPKCNHGFHVECIDMWFQSHSTCPLCRNPVDVE  158 (309)
Q Consensus       104 ~~~~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~Ci~~Wl~~~~~CP~CR~~i~~~  158 (309)
                      ..+...|+||++.+..    ..++ |+|.||..||..|+..+..||+||..+...
T Consensus        12 ~~~~~~C~IC~~~~~~----~~~~-CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~   61 (70)
T 2ecn_A           12 LTDEEECCICMDGRAD----LILP-CAHSFCQKCIDKWSDRHRNCPICRLQMTGA   61 (70)
T ss_dssp             CCCCCCCSSSCCSCCS----EEET-TTEEECHHHHHHSSCCCSSCHHHHHCTTCC
T ss_pred             CCCCCCCeeCCcCccC----cccC-CCCcccHHHHHHHHHCcCcCCCcCCcccCC
Confidence            3456789999999876    5676 999999999999999999999999988754

>2d8s_A Cellular modulator of immune recognition; C-MIR, march8, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.29  E-value=2.1e-12  Score=97.89  Aligned_cols=53  Identities=28%  Similarity=0.684  Sum_probs=43.9

Q ss_pred             CCCceecccccccccCcceeecCCCC-----CccchhHHHHHHhcC--CCCcccCcccccCC
Q 021708          105 KDGLECAVCLSELEDGEKARLLPKCN-----HGFHVECIDMWFQSH--STCPLCRNPVDVER  159 (309)
Q Consensus       105 ~~~~~C~ICl~~~~~~~~~~~lp~C~-----H~FH~~Ci~~Wl~~~--~~CP~CR~~i~~~~  159 (309)
                      .++..|.||++++..++.+ ++| |+     |.||.+||++||..+  .+||+||..+....
T Consensus        13 ~~~~~C~IC~~~~~~~~~l-~~p-C~C~Gs~h~fH~~Cl~~Wl~~~~~~~CplCr~~~~~~~   72 (80)
T 2d8s_A           13 SSQDICRICHCEGDDESPL-ITP-CHCTGSLHFVHQACLQQWIKSSDTRCCELCKYEFIMET   72 (80)
T ss_dssp             TTSCCCSSSCCCCCSSSCE-ECS-SSCCSSSCCEETTHHHHHHHHHCCSBCSSSCCBCCCCC
T ss_pred             CCCCCCeEcCccccCCCee-Eec-cccCCcCCeeCHHHHHHHHhhCCCCCCCCCCCeeecCc
Confidence            3456899999999877665 577 86     999999999999765  48999999987554

>2d8t_A Dactylidin, ring finger protein 146; RNF146, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.28  E-value=1.4e-12  Score=95.82  Aligned_cols=50  Identities=30%  Similarity=0.563  Sum_probs=42.9

Q ss_pred             CCCceecccccccccCcceeecCCCCCccchhHHHHHHhcCCCCcccCcccccC
Q 021708          105 KDGLECAVCLSELEDGEKARLLPKCNHGFHVECIDMWFQSHSTCPLCRNPVDVE  158 (309)
Q Consensus       105 ~~~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~Ci~~Wl~~~~~CP~CR~~i~~~  158 (309)
                      .++..|+||++.+.+   ...++ |+|.||..||..|+..+..||+||..+...
T Consensus        13 ~~~~~C~IC~~~~~~---~~~~~-CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~~   62 (71)
T 2d8t_A           13 LTVPECAICLQTCVH---PVSLP-CKHVFCYLCVKGASWLGKRCALCRQEIPED   62 (71)
T ss_dssp             SSCCBCSSSSSBCSS---EEEET-TTEEEEHHHHHHCTTCSSBCSSSCCBCCHH
T ss_pred             CCCCCCccCCcccCC---CEEcc-CCCHHHHHHHHHHHHCCCcCcCcCchhCHh
Confidence            455789999999865   45667 999999999999999999999999988643

>2djb_A Polycomb group ring finger protein 6; PCGF6, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.27  E-value=3.3e-12  Score=94.09  Aligned_cols=54  Identities=26%  Similarity=0.552  Sum_probs=44.1

Q ss_pred             CCCCCceecccccccccCcceeecCCCCCccchhHHHHHHhcCCCCcccCcccccCC
Q 021708          103 DFKDGLECAVCLSELEDGEKARLLPKCNHGFHVECIDMWFQSHSTCPLCRNPVDVER  159 (309)
Q Consensus       103 ~~~~~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~Ci~~Wl~~~~~CP~CR~~i~~~~  159 (309)
                      +.++...|+||++.|.+  .+.+++ |+|.||..||..|+..+..||+||..+....
T Consensus        11 ~~~~~~~C~IC~~~~~~--p~~~~~-CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~~~   64 (72)
T 2djb_A           11 ELTPYILCSICKGYLID--ATTITE-CLHTFCKSCIVRHFYYSNRCPKCNIVVHQTQ   64 (72)
T ss_dssp             CCCGGGSCTTTSSCCSS--CEECSS-SCCEECHHHHHHHHHHCSSCTTTCCCCCSSC
T ss_pred             hcCCCCCCCCCChHHHC--cCEECC-CCCHHHHHHHHHHHHcCCcCCCcCcccCccc
Confidence            34456789999999875  233346 9999999999999998899999999987543

>2ct2_A Tripartite motif protein 32; zinc-finger protein HT2A, TAT- interacting protein, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.27  E-value=3e-12  Score=97.35  Aligned_cols=56  Identities=23%  Similarity=0.727  Sum_probs=46.6

Q ss_pred             CCCCCCceecccccccccCcc-eeecCCCCCccchhHHHHHHhcC---CCCcccCcccccC
Q 021708          102 QDFKDGLECAVCLSELEDGEK-ARLLPKCNHGFHVECIDMWFQSH---STCPLCRNPVDVE  158 (309)
Q Consensus       102 ~~~~~~~~C~ICl~~~~~~~~-~~~lp~C~H~FH~~Ci~~Wl~~~---~~CP~CR~~i~~~  158 (309)
                      +...+..+|+||++.|...+. .+.++ |||.||..||..|+..+   ..||+||..+...
T Consensus        10 ~~~~~~~~C~IC~~~~~~~~~~~~~~~-CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~~   69 (88)
T 2ct2_A           10 DALREVLECPICMESFTEEQLRPKLLH-CGHTICRQCLEKLLASSINGVRCPFCSKITRIT   69 (88)
T ss_dssp             CCCCSCCBCTTTCCBCCTTSSCEEECS-SSCEEEHHHHHHHHHHCSSCBCCTTTCCCBCCS
T ss_pred             hhccCCCCCccCCccccccCCCeEECC-CCChhhHHHHHHHHHcCCCCcCCCCCCCcccch
Confidence            344566789999999987664 67787 99999999999999775   7899999987653

>1chc_A Equine herpes virus-1 ring domain; viral protein; NMR {Equid herpesvirus 1} SCOP: g.44.1.1

Probab=99.25  E-value=4e-12  Score=92.27  Aligned_cols=49  Identities=37%  Similarity=0.929  Sum_probs=42.4

Q ss_pred             CCceecccccccccCcceeecCCCCCccchhHHHHHHhcCCCCcccCccccc
Q 021708          106 DGLECAVCLSELEDGEKARLLPKCNHGFHVECIDMWFQSHSTCPLCRNPVDV  157 (309)
Q Consensus       106 ~~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~Ci~~Wl~~~~~CP~CR~~i~~  157 (309)
                      .+..|+||++.+..  .+..++ |||.||..|+..|+..+.+||+||..+..
T Consensus         4 ~~~~C~IC~~~~~~--~~~~~~-C~H~fc~~Ci~~~~~~~~~CP~Cr~~~~~   52 (68)
T 1chc_A            4 VAERCPICLEDPSN--YSMALP-CLHAFCYVCITRWIRQNPTCPLCKVPVES   52 (68)
T ss_dssp             CCCCCSSCCSCCCS--CEEETT-TTEEESTTHHHHHHHHSCSTTTTCCCCCC
T ss_pred             CCCCCeeCCccccC--CcEecC-CCCeeHHHHHHHHHhCcCcCcCCChhhHh
Confidence            45689999999864  346777 99999999999999999999999998864

>4a0k_B E3 ubiquitin-protein ligase RBX1; ligase-DNA-binding protein-DNA complex, DNA-binding protein- complex; HET: DNA 3DR; 5.93A {Mus musculus}

Probab=99.24  E-value=7.4e-13  Score=107.39  Aligned_cols=52  Identities=31%  Similarity=0.663  Sum_probs=0.8

Q ss_pred             CCceecccccccccC--------------cceeecCCCCCccchhHHHHHHhcCCCCcccCccccc
Q 021708          106 DGLECAVCLSELEDG--------------EKARLLPKCNHGFHVECIDMWFQSHSTCPLCRNPVDV  157 (309)
Q Consensus       106 ~~~~C~ICl~~~~~~--------------~~~~~lp~C~H~FH~~Ci~~Wl~~~~~CP~CR~~i~~  157 (309)
                      +++.|+||+++|...              +..+++..|+|.||..||+.||..+.+||+||..+..
T Consensus        47 ~~d~CaICl~~~~~~c~~C~~~~~~~~~~~~~v~~~~C~H~FH~~CI~~Wl~~~~~CP~Cr~~~~~  112 (117)
T 4a0k_B           47 VVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDNREWEF  112 (117)
T ss_dssp             CC----------------------------------------------------------------
T ss_pred             CCCcCeECChhhcCcChhhhcccccccccccccccCCcCceEcHHHHHHHHHcCCcCCCCCCeeee
Confidence            346899999999752              2223323499999999999999999999999998653

>2ysl_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.22  E-value=8.8e-12  Score=91.59  Aligned_cols=51  Identities=27%  Similarity=0.734  Sum_probs=42.2

Q ss_pred             CCCCceecccccccccCcceeecCCCCCccchhHHHHHHh---cCCCCcccCcccccC
Q 021708          104 FKDGLECAVCLSELEDGEKARLLPKCNHGFHVECIDMWFQ---SHSTCPLCRNPVDVE  158 (309)
Q Consensus       104 ~~~~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~Ci~~Wl~---~~~~CP~CR~~i~~~  158 (309)
                      ..+...|+||++.|.+   ...++ |||.||..||..|+.   .+..||+||..+...
T Consensus        17 ~~~~~~C~IC~~~~~~---~~~~~-CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~~   70 (73)
T 2ysl_A           17 LQEEVICPICLDILQK---PVTID-CGHNFCLKCITQIGETSCGFFKCPLCKTSVRKN   70 (73)
T ss_dssp             CCCCCBCTTTCSBCSS---EEECT-TCCEEEHHHHHHHCSSSCSCCCCSSSCCCCCCC
T ss_pred             CccCCEeccCCcccCC---eEEcC-CCChhhHHHHHHHHHcCCCCCCCCCCCCcCCcc
Confidence            4456789999999875   55666 999999999999996   456899999988653

>2csy_A Zinc finger protein 183-like 1; ring finger protein 161, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.21  E-value=7.3e-12  Score=94.27  Aligned_cols=49  Identities=20%  Similarity=0.560  Sum_probs=42.5

Q ss_pred             CCCCceecccccccccCcceeecCCCCCccchhHHHHHHhcCCCCcccCcccc
Q 021708          104 FKDGLECAVCLSELEDGEKARLLPKCNHGFHVECIDMWFQSHSTCPLCRNPVD  156 (309)
Q Consensus       104 ~~~~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~Ci~~Wl~~~~~CP~CR~~i~  156 (309)
                      ..+...|+||++.|..   ...++ |+|.||..||..|+.....||+||..+.
T Consensus        12 ~~~~~~C~IC~~~~~~---p~~~~-CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~   60 (81)
T 2csy_A           12 EEIPFRCFICRQAFQN---PVVTK-CRHYFCESCALEHFRATPRCYICDQPTG   60 (81)
T ss_dssp             CCCCSBCSSSCSBCCS---EEECT-TSCEEEHHHHHHHHHHCSBCSSSCCBCC
T ss_pred             CCCCCCCcCCCchhcC---eeEcc-CCCHhHHHHHHHHHHCCCcCCCcCcccc
Confidence            3456789999999865   45677 9999999999999998899999999985

>2ecy_A TNF receptor-associated factor 3; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.20  E-value=1.1e-11  Score=89.64  Aligned_cols=51  Identities=22%  Similarity=0.553  Sum_probs=41.6

Q ss_pred             CCCCceecccccccccCcceeecCCCCCccchhHHHHHH-hcCCCCcccCcccccC
Q 021708          104 FKDGLECAVCLSELEDGEKARLLPKCNHGFHVECIDMWF-QSHSTCPLCRNPVDVE  158 (309)
Q Consensus       104 ~~~~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~Ci~~Wl-~~~~~CP~CR~~i~~~  158 (309)
                      ..+...|+||++.+.+.   ..++ |||.||..||..|+ ..+..||+||..+...
T Consensus        12 ~~~~~~C~IC~~~~~~p---~~~~-CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~   63 (66)
T 2ecy_A           12 VEDKYKCEKCHLVLCSP---KQTE-CGHRFCESCMAALLSSSSPKCTACQESIVKD   63 (66)
T ss_dssp             CCCCEECTTTCCEESSC---CCCS-SSCCCCHHHHHHHHTTSSCCCTTTCCCCCTT
T ss_pred             CCcCCCCCCCChHhcCe---eECC-CCCHHHHHHHHHHHHhCcCCCCCCCcCCChh
Confidence            34567899999998753   3366 99999999999999 4567899999988653

>2ct0_A Non-SMC element 1 homolog; ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.19  E-value=1.7e-11  Score=91.45  Aligned_cols=51  Identities=29%  Similarity=0.643  Sum_probs=42.3

Q ss_pred             CCceecccccccccCcceeecCCCCCccchhHHHHHHhcC--CCCcccCcccccCC
Q 021708          106 DGLECAVCLSELEDGEKARLLPKCNHGFHVECIDMWFQSH--STCPLCRNPVDVER  159 (309)
Q Consensus       106 ~~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~Ci~~Wl~~~--~~CP~CR~~i~~~~  159 (309)
                      ...+|+||++.|..++...   .|+|.||..||.+||+.+  .+||+||..+..+.
T Consensus        14 ~i~~C~IC~~~i~~g~~C~---~C~h~fH~~Ci~kWl~~~~~~~CP~Cr~~w~~~~   66 (74)
T 2ct0_A           14 AVKICNICHSLLIQGQSCE---TCGIRMHLPCVAKYFQSNAEPRCPHCNDYWPHEI   66 (74)
T ss_dssp             SSCBCSSSCCBCSSSEECS---SSCCEECHHHHHHHSTTCSSCCCTTTCSCCCSCC
T ss_pred             CCCcCcchhhHcccCCccC---CCCchhhHHHHHHHHHhcCCCCCCCCcCcCCCCC
Confidence            4568999999998765433   599999999999999887  88999998887543

>2yur_A Retinoblastoma-binding protein 6; P53-associated cellular protein of testis, proliferation potential-related protein, protein P2P-R; NMR {Homo sapiens}

Probab=99.18  E-value=1.4e-11  Score=91.27  Aligned_cols=52  Identities=29%  Similarity=0.623  Sum_probs=41.9

Q ss_pred             CCCCCceecccccccccCcceeecCCCCCccchhHHHHHHhcC--CCCcccCccccc
Q 021708          103 DFKDGLECAVCLSELEDGEKARLLPKCNHGFHVECIDMWFQSH--STCPLCRNPVDV  157 (309)
Q Consensus       103 ~~~~~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~Ci~~Wl~~~--~~CP~CR~~i~~  157 (309)
                      ...+...|+||++.|.+   ...++.|||.||..||..|+..+  ..||+||..+..
T Consensus        11 ~~~~~~~C~IC~~~~~~---p~~~~~CgH~fC~~Ci~~~~~~~~~~~CP~Cr~~~~~   64 (74)
T 2yur_A           11 PIPDELLCLICKDIMTD---AVVIPCCGNSYCDECIRTALLESDEHTCPTCHQNDVS   64 (74)
T ss_dssp             CSCGGGSCSSSCCCCTT---CEECSSSCCEECTTHHHHHHHHSSSSCCSSSCCSSCC
T ss_pred             cCCCCCCCcCCChHHhC---CeEcCCCCCHHHHHHHHHHHHhcCCCcCCCCCCcCCC
Confidence            34456789999999875   44565599999999999999765  689999997543

>4ayc_A E3 ubiquitin-protein ligase RNF8; DNA damage, K63 chains; HET: CPQ; 1.90A {Homo sapiens} PDB: 4epo_C

Probab=99.16  E-value=9.5e-12  Score=103.20  Aligned_cols=48  Identities=31%  Similarity=0.860  Sum_probs=42.0

Q ss_pred             CCceecccccccccCcceeecCCCCCccchhHHHHHHhcCCCCcccCccccc
Q 021708          106 DGLECAVCLSELEDGEKARLLPKCNHGFHVECIDMWFQSHSTCPLCRNPVDV  157 (309)
Q Consensus       106 ~~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~Ci~~Wl~~~~~CP~CR~~i~~  157 (309)
                      ++..|+||++.|.+   ++.++ |||.||..||..|+..+.+||+||.++..
T Consensus        52 ~~~~C~iC~~~~~~---~~~~~-CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~   99 (138)
T 4ayc_A           52 NELQCIICSEYFIE---AVTLN-CAHSFCSYCINEWMKRKIECPICRKDIKS   99 (138)
T ss_dssp             HHSBCTTTCSBCSS---EEEET-TSCEEEHHHHHHHTTTCSBCTTTCCBCCC
T ss_pred             ccCCCcccCcccCC---ceECC-CCCCccHHHHHHHHHcCCcCCCCCCcCCC
Confidence            34679999999875   56677 99999999999999999999999998854

>2ecv_A Tripartite motif-containing protein 5; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.14  E-value=4.8e-11  Score=89.64  Aligned_cols=51  Identities=31%  Similarity=0.740  Sum_probs=42.8

Q ss_pred             CCCCceecccccccccCcceeecCCCCCccchhHHHHHHhc------CCCCcccCcccccC
Q 021708          104 FKDGLECAVCLSELEDGEKARLLPKCNHGFHVECIDMWFQS------HSTCPLCRNPVDVE  158 (309)
Q Consensus       104 ~~~~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~Ci~~Wl~~------~~~CP~CR~~i~~~  158 (309)
                      ..+...|+||++.|..   ...++ |+|.||..|+..|+..      ...||+||..+...
T Consensus        16 ~~~~~~C~IC~~~~~~---p~~~~-CgH~fC~~Ci~~~~~~~~~~~~~~~CP~Cr~~~~~~   72 (85)
T 2ecv_A           16 VKEEVTCPICLELLTQ---PLSLD-CGHSFCQACLTANHKKSMLDKGESSCPVCRISYQPE   72 (85)
T ss_dssp             CCCCCCCTTTCSCCSS---CBCCS-SSCCBCTTHHHHHHHHHHHTTSCCCCTTTCCSSCSS
T ss_pred             ccCCCCCCCCCcccCC---ceeCC-CCCHHHHHHHHHHHHHhhcCCCCCcCCCCCCccCHH
Confidence            4456789999999875   44566 9999999999999976      78899999998753

>2ecw_A Tripartite motif-containing protein 30; metal binding protein, structural genomics, NPPSFA; NMR {Mus musculus}

Probab=99.13  E-value=3.6e-11  Score=90.35  Aligned_cols=51  Identities=33%  Similarity=0.839  Sum_probs=42.6

Q ss_pred             CCCCceecccccccccCcceeecCCCCCccchhHHHHHHhc------CCCCcccCcccccC
Q 021708          104 FKDGLECAVCLSELEDGEKARLLPKCNHGFHVECIDMWFQS------HSTCPLCRNPVDVE  158 (309)
Q Consensus       104 ~~~~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~Ci~~Wl~~------~~~CP~CR~~i~~~  158 (309)
                      ..++..|+||++.|..   ...++ |+|.||..||..|+..      ...||+||..+...
T Consensus        16 ~~~~~~C~IC~~~~~~---p~~~~-CgH~fC~~Ci~~~~~~~~~~~~~~~CP~Cr~~~~~~   72 (85)
T 2ecw_A           16 IKEEVTCPICLELLKE---PVSAD-CNHSFCRACITLNYESNRNTDGKGNCPVCRVPYPFG   72 (85)
T ss_dssp             CCTTTSCTTTCSCCSS---CEECT-TSCCBCHHHHHHHHHHSBCTTSCBCCTTTCCCCCTT
T ss_pred             CccCCCCcCCChhhCc---ceeCC-CCCHHHHHHHHHHHHhccCCCCCCCCCCCCCcCCHH
Confidence            4456789999999875   34677 9999999999999977      67899999988743

>2egp_A Tripartite motif-containing protein 34; ZF-C3HC4 domain, tripartite motif protein 34, interferon- responsive finger protein 1; NMR {Homo sapiens}

Probab=99.13  E-value=2.1e-11  Score=90.85  Aligned_cols=51  Identities=25%  Similarity=0.675  Sum_probs=42.6

Q ss_pred             CCCCCceecccccccccCcceeecCCCCCccchhHHHHHHhc-------CCCCcccCccccc
Q 021708          103 DFKDGLECAVCLSELEDGEKARLLPKCNHGFHVECIDMWFQS-------HSTCPLCRNPVDV  157 (309)
Q Consensus       103 ~~~~~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~Ci~~Wl~~-------~~~CP~CR~~i~~  157 (309)
                      ...+...|+||++.|.+   .+.++ |||.||..||..|+..       ...||+||..+..
T Consensus         8 ~~~~~~~C~IC~~~~~~---p~~l~-CgH~fC~~Ci~~~~~~~~~~~~~~~~CP~Cr~~~~~   65 (79)
T 2egp_A            8 NVQEEVTCPICLELLTE---PLSLD-CGHSLCRACITVSNKEAVTSMGGKSSCPVCGISYSF   65 (79)
T ss_dssp             CCCCCCEETTTTEECSS---CCCCS-SSCCCCHHHHSCCCCCCSSSCCCCCCCSSSCCCCCS
T ss_pred             hcccCCCCcCCCcccCC---eeECC-CCCHHHHHHHHHHHHhcccCCCCCCcCCCCCCcCCH
Confidence            34566889999999875   44567 9999999999999976       6689999998875

>1t1h_A Gspef-atpub14, armadillo repeat containing protein; ubiquitin ligase, E3 ligase, U-BOX,; NMR {Arabidopsis thaliana} SCOP: g.44.1.2

Probab=99.12  E-value=4.2e-11  Score=89.24  Aligned_cols=51  Identities=20%  Similarity=0.559  Sum_probs=43.1

Q ss_pred             CCCCceecccccccccCcceeecCCCCCccchhHHHHHHhc-CCCCcccCcccccC
Q 021708          104 FKDGLECAVCLSELEDGEKARLLPKCNHGFHVECIDMWFQS-HSTCPLCRNPVDVE  158 (309)
Q Consensus       104 ~~~~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~Ci~~Wl~~-~~~CP~CR~~i~~~  158 (309)
                      ..+...|+||++.|.+   ...++ |||.||..||..|+.. +.+||+||..+...
T Consensus         5 ~~~~~~C~IC~~~~~~---Pv~~~-CgH~fc~~Ci~~~~~~~~~~CP~C~~~~~~~   56 (78)
T 1t1h_A            5 FPEYFRCPISLELMKD---PVIVS-TGQTYERSSIQKWLDAGHKTCPKSQETLLHA   56 (78)
T ss_dssp             CSSSSSCTTTSCCCSS---EEEET-TTEEEEHHHHHHHHTTTCCBCTTTCCBCSSC
T ss_pred             CcccCCCCCccccccC---CEEcC-CCCeecHHHHHHHHHHCcCCCCCCcCCCChh
Confidence            4556789999999875   45567 9999999999999986 78899999988643

>2ysj_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.10  E-value=5.4e-11  Score=85.08  Aligned_cols=45  Identities=29%  Similarity=0.792  Sum_probs=37.3

Q ss_pred             CCCCCceecccccccccCcceeecCCCCCccchhHHHHHHh---cCCCCccc
Q 021708          103 DFKDGLECAVCLSELEDGEKARLLPKCNHGFHVECIDMWFQ---SHSTCPLC  151 (309)
Q Consensus       103 ~~~~~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~Ci~~Wl~---~~~~CP~C  151 (309)
                      ..+++..|+||++.|.+   .+.++ |||.||..||..|+.   ....||+|
T Consensus        16 ~~~~~~~C~IC~~~~~~---p~~~~-CgH~fC~~Ci~~~~~~~~~~~~CP~C   63 (63)
T 2ysj_A           16 KLQEEVICPICLDILQK---PVTID-CGHNFCLKCITQIGETSCGFFKCPLC   63 (63)
T ss_dssp             CCCCCCBCTTTCSBCSS---CEECT-TSSEECHHHHHHHHHHCSSCCCCSCC
T ss_pred             hCccCCCCCcCCchhCC---eEEeC-CCCcchHHHHHHHHHcCCCCCcCcCC
Confidence            34566789999999875   45566 999999999999997   45689998

>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}

Probab=99.09  E-value=3.7e-11  Score=97.58  Aligned_cols=52  Identities=21%  Similarity=0.605  Sum_probs=44.3

Q ss_pred             CCceecccccccccC----cceeecCCCCCccchhHHHHHHhcCCCCcccCcccccC
Q 021708          106 DGLECAVCLSELEDG----EKARLLPKCNHGFHVECIDMWFQSHSTCPLCRNPVDVE  158 (309)
Q Consensus       106 ~~~~C~ICl~~~~~~----~~~~~lp~C~H~FH~~Ci~~Wl~~~~~CP~CR~~i~~~  158 (309)
                      +...|+||++.|.+.    +.++.++ |||.||..||..|+..+.+||+||..+...
T Consensus         6 ~~~~C~IC~~~~~~~~~~~~~~~~~~-CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~   61 (133)
T 4ap4_A            6 GTVSCPICMDGYSEIVQNGRLIVSTE-CGHVFCSQCLRDSLKNANTCPTCRKKINHK   61 (133)
T ss_dssp             CSCBCTTTCCBHHHHHHTTCCEEEET-TCCEEEHHHHHHHHTTCSBCTTTCCBCTTT
T ss_pred             CCCCCcccChhhhCccccccCeEecC-CCChhhHHHHHHHHHhCCCCCCCCCcCccc
Confidence            457899999999763    4446776 999999999999999999999999988643

>3lrq_A E3 ubiquitin-protein ligase TRIM37; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: MSE; 2.29A {Homo sapiens}

Probab=99.09  E-value=4.2e-11  Score=93.97  Aligned_cols=49  Identities=33%  Similarity=0.892  Sum_probs=41.6

Q ss_pred             CCceecccccccccCcceee-cCCCCCccchhHHHHHHhcC-CCCcccCcccccC
Q 021708          106 DGLECAVCLSELEDGEKARL-LPKCNHGFHVECIDMWFQSH-STCPLCRNPVDVE  158 (309)
Q Consensus       106 ~~~~C~ICl~~~~~~~~~~~-lp~C~H~FH~~Ci~~Wl~~~-~~CP~CR~~i~~~  158 (309)
                      +...|+||++.|..   .+. ++ |||.||..||..|+..+ ..||+||..+...
T Consensus        21 ~~~~C~IC~~~~~~---p~~~~~-CgH~FC~~Ci~~~~~~~~~~CP~Cr~~~~~~   71 (100)
T 3lrq_A           21 EVFRCFICMEKLRD---ARLCPH-CSKLCCFSCIRRWLTEQRAQCPHCRAPLQLR   71 (100)
T ss_dssp             HHTBCTTTCSBCSS---EEECTT-TCCEEEHHHHHHHHHHTCSBCTTTCCBCCGG
T ss_pred             CCCCCccCCccccC---ccccCC-CCChhhHHHHHHHHHHCcCCCCCCCCcCCHH
Confidence            45689999999975   445 66 99999999999999877 6899999998653

>2ecj_A Tripartite motif-containing protein 39; TRIM39, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.07  E-value=8.3e-11  Score=82.35  Aligned_cols=44  Identities=32%  Similarity=0.929  Sum_probs=36.2

Q ss_pred             CCCCceecccccccccCcceeecCCCCCccchhHHHHHH---hcCCCCccc
Q 021708          104 FKDGLECAVCLSELEDGEKARLLPKCNHGFHVECIDMWF---QSHSTCPLC  151 (309)
Q Consensus       104 ~~~~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~Ci~~Wl---~~~~~CP~C  151 (309)
                      ..+...|+||++.+.+.   +.++ |+|.||..||..|+   ..+..||+|
T Consensus        12 ~~~~~~C~IC~~~~~~p---~~~~-CgH~fC~~Ci~~~~~~~~~~~~CP~C   58 (58)
T 2ecj_A           12 LQVEASCSVCLEYLKEP---VIIE-CGHNFCKACITRWWEDLERDFPCPVC   58 (58)
T ss_dssp             SCCCCBCSSSCCBCSSC---CCCS-SCCCCCHHHHHHHTTSSCCSCCCSCC
T ss_pred             cccCCCCccCCcccCcc---EeCC-CCCccCHHHHHHHHHhcCCCCCCCCC
Confidence            34567899999998763   4566 99999999999995   456789998

>2y43_A E3 ubiquitin-protein ligase RAD18; DNA repair, metal-binding, translesion synthesis, UB conjugation pathway; 1.80A {Homo sapiens}

Probab=99.05  E-value=9.1e-11  Score=91.51  Aligned_cols=48  Identities=27%  Similarity=0.702  Sum_probs=41.3

Q ss_pred             CCceecccccccccCcceeec-CCCCCccchhHHHHHHhcCCCCcccCccccc
Q 021708          106 DGLECAVCLSELEDGEKARLL-PKCNHGFHVECIDMWFQSHSTCPLCRNPVDV  157 (309)
Q Consensus       106 ~~~~C~ICl~~~~~~~~~~~l-p~C~H~FH~~Ci~~Wl~~~~~CP~CR~~i~~  157 (309)
                      +...|+||++.|.+   ...+ + |||.||..||..|+..+..||+||..+..
T Consensus        21 ~~~~C~IC~~~~~~---p~~~~~-CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~   69 (99)
T 2y43_A           21 DLLRCGICFEYFNI---AMIIPQ-CSHNYCSLCIRKFLSYKTQCPTCCVTVTE   69 (99)
T ss_dssp             HHTBCTTTCSBCSS---EEECTT-TCCEEEHHHHHHHHTTCCBCTTTCCBCCG
T ss_pred             CCCCcccCChhhCC---cCEECC-CCCHhhHHHHHHHHHCCCCCCCCCCcCCh
Confidence            34689999999875   4444 5 99999999999999988999999998875

>3ztg_A E3 ubiquitin-protein ligase RBBP6; PACT, U-BOX, mRNA processing, mRNA splicing; NMR {Homo sapiens}

Probab=99.05  E-value=1.3e-10  Score=89.30  Aligned_cols=51  Identities=29%  Similarity=0.646  Sum_probs=41.7

Q ss_pred             CCCCCceecccccccccCcceeecCCCCCccchhHHHHHHhc--CCCCcccCcccc
Q 021708          103 DFKDGLECAVCLSELEDGEKARLLPKCNHGFHVECIDMWFQS--HSTCPLCRNPVD  156 (309)
Q Consensus       103 ~~~~~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~Ci~~Wl~~--~~~CP~CR~~i~  156 (309)
                      ...+...|+||++.|.+   .+.++.|||.||..||..|+..  +..||+||..+.
T Consensus         9 ~~~~~~~C~IC~~~~~~---p~~~~~CgH~fC~~Ci~~~~~~~~~~~CP~Cr~~~~   61 (92)
T 3ztg_A            9 PIPDELLCLICKDIMTD---AVVIPCCGNSYCDECIRTALLESDEHTCPTCHQNDV   61 (92)
T ss_dssp             CCCTTTEETTTTEECSS---CEECTTTCCEECHHHHHHHHHHCTTCCCTTTCCSSC
T ss_pred             cCCcCCCCCCCChhhcC---ceECCCCCCHHHHHHHHHHHHhcCCCcCcCCCCcCC
Confidence            44567899999999875   4456559999999999999964  358999999874

>1g25_A CDK-activating kinase assembly factor MAT1; ring finger (C3HC4), metal binding protein; NMR {Homo sapiens} SCOP: g.44.1.1

Probab=99.04  E-value=1.2e-10  Score=83.85  Aligned_cols=50  Identities=22%  Similarity=0.606  Sum_probs=40.0

Q ss_pred             Cceeccccc-ccccCcce-eecCCCCCccchhHHHHHHhc-CCCCcccCccccc
Q 021708          107 GLECAVCLS-ELEDGEKA-RLLPKCNHGFHVECIDMWFQS-HSTCPLCRNPVDV  157 (309)
Q Consensus       107 ~~~C~ICl~-~~~~~~~~-~~lp~C~H~FH~~Ci~~Wl~~-~~~CP~CR~~i~~  157 (309)
                      +..|+||++ .+...... ..++ |||.||..||..|+.. ...||+||..+..
T Consensus         3 ~~~C~IC~~~~~~~~~~~~~~~~-CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~   55 (65)
T 1g25_A            3 DQGCPRCKTTKYRNPSLKLMVNV-CGHTLCESCVDLLFVRGAGNCPECGTPLRK   55 (65)
T ss_dssp             TTCCSTTTTHHHHCSSCCEEECT-TCCCEEHHHHHHHHHTTSSSCTTTCCCCSS
T ss_pred             CCcCCcCCCCccCCCccCeecCC-CCCHhHHHHHHHHHHcCCCcCCCCCCcccc
Confidence            467999999 77665443 3466 9999999999999754 4679999998864

>2ckl_A Polycomb group ring finger protein 4; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_B 2h0d_A

Probab=99.04  E-value=8.4e-11  Score=93.23  Aligned_cols=51  Identities=25%  Similarity=0.639  Sum_probs=42.6

Q ss_pred             CCCceecccccccccCcceeecCCCCCccchhHHHHHHhcCCCCcccCcccccC
Q 021708          105 KDGLECAVCLSELEDGEKARLLPKCNHGFHVECIDMWFQSHSTCPLCRNPVDVE  158 (309)
Q Consensus       105 ~~~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~Ci~~Wl~~~~~CP~CR~~i~~~  158 (309)
                      .+...|+||++.|.+  .+..++ |||.||..||..|+..+..||+||..+...
T Consensus        13 ~~~~~C~IC~~~~~~--p~~~~~-CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~~   63 (108)
T 2ckl_A           13 NPHLMCVLCGGYFID--ATTIIE-CLHSFCKTCIVRYLETSKYCPICDVQVHKT   63 (108)
T ss_dssp             GGGTBCTTTSSBCSS--EEEETT-TCCEEEHHHHHHHHTSCSBCTTTCCBSCSS
T ss_pred             CCcCCCccCChHHhC--cCEeCC-CCChhhHHHHHHHHHhCCcCcCCCcccccc
Confidence            456789999999875  333346 999999999999999999999999988753

>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}

Probab=99.03  E-value=8.4e-11  Score=95.42  Aligned_cols=53  Identities=21%  Similarity=0.594  Sum_probs=44.1

Q ss_pred             CCCceecccccccccC----cceeecCCCCCccchhHHHHHHhcCCCCcccCcccccC
Q 021708          105 KDGLECAVCLSELEDG----EKARLLPKCNHGFHVECIDMWFQSHSTCPLCRNPVDVE  158 (309)
Q Consensus       105 ~~~~~C~ICl~~~~~~----~~~~~lp~C~H~FH~~Ci~~Wl~~~~~CP~CR~~i~~~  158 (309)
                      ++...|+||++.|...    ..+..++ |||.||..||+.|+..+.+||+||..+...
T Consensus        70 ~~~~~C~iC~~~~~~~~~~~~~~~~~~-CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~  126 (133)
T 4ap4_A           70 SGTVSCPICMDGYSEIVQNGRLIVSTE-CGHVFCSQCLRDSLKNANTCPTCRKKINHK  126 (133)
T ss_dssp             SSSCBCTTTCCBHHHHHHTTCCEEEET-TSBEEEHHHHHHHHHHCSBCTTTCCBCCGG
T ss_pred             CCCCCCCCCCCccccccccCcceEeCC-CCChhhHHHHHHHHHcCCCCCCCCCcCChh
Confidence            3457899999998753    3345666 999999999999999999999999998754

>2ckl_B Ubiquitin ligase protein RING2; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_C 2h0d_B

Probab=99.02  E-value=1.1e-10  Score=99.31  Aligned_cols=49  Identities=31%  Similarity=0.693  Sum_probs=40.8

Q ss_pred             CCceecccccccccCcceeecCCCCCccchhHHHHHHhc-CCCCcccCccccc
Q 021708          106 DGLECAVCLSELEDGEKARLLPKCNHGFHVECIDMWFQS-HSTCPLCRNPVDV  157 (309)
Q Consensus       106 ~~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~Ci~~Wl~~-~~~CP~CR~~i~~  157 (309)
                      +...|+||++.|.+  .+..++ |||.||..||..|+.. +..||+||..+..
T Consensus        53 ~~~~C~IC~~~~~~--p~~~~~-CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~  102 (165)
T 2ckl_B           53 SELMCPICLDMLKN--TMTTKE-CLHRFCADCIITALRSGNKECPTCRKKLVS  102 (165)
T ss_dssp             HHHBCTTTSSBCSS--EEEETT-TCCEEEHHHHHHHHHTTCCBCTTTCCBCCS
T ss_pred             CCCCCcccChHhhC--cCEeCC-CCChhHHHHHHHHHHhCcCCCCCCCCcCCC
Confidence            45689999999875  344446 9999999999999987 7789999999854

>3fl2_A E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA damage, DNA repair, ring finger domain, metal binding, DNA replication; 1.75A {Homo sapiens}

Probab=98.99  E-value=3.2e-10  Score=92.05  Aligned_cols=48  Identities=23%  Similarity=0.613  Sum_probs=40.6

Q ss_pred             CCceecccccccccCcceeecCCCCCccchhHHHHHHhcC-CCCcccCccccc
Q 021708          106 DGLECAVCLSELEDGEKARLLPKCNHGFHVECIDMWFQSH-STCPLCRNPVDV  157 (309)
Q Consensus       106 ~~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~Ci~~Wl~~~-~~CP~CR~~i~~  157 (309)
                      +...|+||++.|..   ...++ |||.||..||..|+..+ ..||+||..+..
T Consensus        51 ~~~~C~IC~~~~~~---p~~~~-CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~   99 (124)
T 3fl2_A           51 ETFQCICCQELVFR---PITTV-CQHNVCKDCLDRSFRAQVFSCPACRYDLGR   99 (124)
T ss_dssp             HHTBCTTTSSBCSS---EEECT-TSCEEEHHHHHHHHHTTCCBCTTTCCBCCT
T ss_pred             cCCCCCcCChHHcC---cEEee-CCCcccHHHHHHHHhHCcCCCCCCCccCCC
Confidence            45689999999885   55677 99999999999999754 489999999865

>1jm7_A BRCA1, breast cancer type 1 susceptibility protein; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1

Probab=98.95  E-value=3.7e-10  Score=89.57  Aligned_cols=48  Identities=31%  Similarity=0.715  Sum_probs=40.0

Q ss_pred             CceecccccccccCcceeecCCCCCccchhHHHHHHhcC---CCCcccCcccccC
Q 021708          107 GLECAVCLSELEDGEKARLLPKCNHGFHVECIDMWFQSH---STCPLCRNPVDVE  158 (309)
Q Consensus       107 ~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~Ci~~Wl~~~---~~CP~CR~~i~~~  158 (309)
                      ...|+||++.|..   ...++ |||.||..||..|+..+   ..||+||..+...
T Consensus        21 ~~~C~IC~~~~~~---p~~~~-CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~~   71 (112)
T 1jm7_A           21 ILECPICLELIKE---PVSTK-CDHIFCKFCMLKLLNQKKGPSQCPLCKNDITKR   71 (112)
T ss_dssp             HTSCSSSCCCCSS---CCBCT-TSCCCCSHHHHHHHHSSSSSCCCTTTSCCCCTT
T ss_pred             CCCCcccChhhcC---eEECC-CCCHHHHHHHHHHHHhCCCCCCCcCCCCcCCHh
Confidence            4579999999865   34466 99999999999999765   3899999988754

>3hct_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 3hcu_A 2eci_A 2jmd_A

Probab=98.92  E-value=3.9e-10  Score=90.88  Aligned_cols=52  Identities=27%  Similarity=0.580  Sum_probs=42.7

Q ss_pred             CCCCCceecccccccccCcceeecCCCCCccchhHHHHHHhcCC-CCcccCcccccC
Q 021708          103 DFKDGLECAVCLSELEDGEKARLLPKCNHGFHVECIDMWFQSHS-TCPLCRNPVDVE  158 (309)
Q Consensus       103 ~~~~~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~Ci~~Wl~~~~-~CP~CR~~i~~~  158 (309)
                      ...+...|+||++.|..   ...++ |||.||..||..|+..+. .||+||..+...
T Consensus        14 ~~~~~~~C~IC~~~~~~---p~~~~-CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~   66 (118)
T 3hct_A           14 PLESKYECPICLMALRE---AVQTP-CGHRFCKACIIKSIRDAGHKCPVDNEILLEN   66 (118)
T ss_dssp             CCCGGGBCTTTCSBCSS---EEECT-TSCEEEHHHHHHHHHHHCSBCTTTCCBCCGG
T ss_pred             CCCCCCCCCcCChhhcC---eEECC-cCChhhHHHHHHHHhhCCCCCCCCCCCcCHH
Confidence            34456789999999875   45576 999999999999997654 899999988753

>1z6u_A NP95-like ring finger protein isoform B; structural genomics consortium, ligase, ubiquitin-protein ligase, cell cycle regulation, SGC; 2.10A {Homo sapiens}

Probab=98.90  E-value=7.2e-10  Score=93.41  Aligned_cols=49  Identities=20%  Similarity=0.595  Sum_probs=41.3

Q ss_pred             CCceecccccccccCcceeecCCCCCccchhHHHHHHhcCC-CCcccCcccccC
Q 021708          106 DGLECAVCLSELEDGEKARLLPKCNHGFHVECIDMWFQSHS-TCPLCRNPVDVE  158 (309)
Q Consensus       106 ~~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~Ci~~Wl~~~~-~CP~CR~~i~~~  158 (309)
                      +...|+||++.|.+   ...++ |||.||..||..|+.... .||+||..+...
T Consensus        77 ~~~~C~IC~~~~~~---pv~~~-CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~  126 (150)
T 1z6u_A           77 QSFMCVCCQELVYQ---PVTTE-CFHNVCKDCLQRSFKAQVFSCPACRHDLGQN  126 (150)
T ss_dssp             HHTBCTTTSSBCSS---EEECT-TSCEEEHHHHHHHHHTTCCBCTTTCCBCCTT
T ss_pred             cCCEeecCChhhcC---CEEcC-CCCchhHHHHHHHHHhCCCcCCCCCccCCCC
Confidence            45689999999875   45577 999999999999998654 899999998754

>3l11_A E3 ubiquitin-protein ligase RNF168; E3 ligase, ring domain, DNA damage, chromatin regulator, CHR protein, DNA repair, metal-binding, nucleus; 2.12A {Homo sapiens}

Probab=98.90  E-value=1.5e-10  Score=92.79  Aligned_cols=48  Identities=29%  Similarity=0.737  Sum_probs=40.7

Q ss_pred             CCceecccccccccCcceeecCCCCCccchhHHHHHHhc-CCCCcccCccccc
Q 021708          106 DGLECAVCLSELEDGEKARLLPKCNHGFHVECIDMWFQS-HSTCPLCRNPVDV  157 (309)
Q Consensus       106 ~~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~Ci~~Wl~~-~~~CP~CR~~i~~  157 (309)
                      ++..|+||++.|..   .+.++ |||.||..||..|+.. +..||+||..+..
T Consensus        14 ~~~~C~iC~~~~~~---p~~~~-CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~   62 (115)
T 3l11_A           14 SECQCGICMEILVE---PVTLP-CNHTLCKPCFQSTVEKASLCCPFCRRRVSS   62 (115)
T ss_dssp             HHHBCTTTCSBCSS---CEECT-TSCEECHHHHCCCCCTTTSBCTTTCCBCHH
T ss_pred             CCCCCccCCcccCc---eeEcC-CCCHHhHHHHHHHHhHCcCCCCCCCcccCc
Confidence            45689999999875   45666 9999999999999976 6789999999864

>1bor_A Transcription factor PML; proto-oncogene, nuclear bodies (PODS), leukemia, transcription regulation; NMR {Homo sapiens} SCOP: g.44.1.1

Probab=98.89  E-value=3.9e-10  Score=79.20  Aligned_cols=47  Identities=30%  Similarity=0.702  Sum_probs=39.2

Q ss_pred             CCCceecccccccccCcceeecCCCCCccchhHHHHHHhcCCCCcccCcccccC
Q 021708          105 KDGLECAVCLSELEDGEKARLLPKCNHGFHVECIDMWFQSHSTCPLCRNPVDVE  158 (309)
Q Consensus       105 ~~~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~Ci~~Wl~~~~~CP~CR~~i~~~  158 (309)
                      .+...|+||++.|.+   .+.++ |||.||..||..|   ...||+||..+...
T Consensus         4 ~~~~~C~IC~~~~~~---p~~l~-CgH~fC~~Ci~~~---~~~CP~Cr~~~~~~   50 (56)
T 1bor_A            4 FQFLRCQQCQAEAKC---PKLLP-CLHTLCSGCLEAS---GMQCPICQAPWPLG   50 (56)
T ss_dssp             CCCSSCSSSCSSCBC---CSCST-TSCCSBTTTCSSS---SSSCSSCCSSSSCC
T ss_pred             ccCCCceEeCCccCC---eEEcC-CCCcccHHHHccC---CCCCCcCCcEeecC
Confidence            456789999999886   46677 9999999999885   56899999988754

>1e4u_A Transcriptional repressor NOT4; gene regulation, transcriptional control; NMR {Homo sapiens} SCOP: g.44.1.1 PDB: 1ur6_B

Probab=98.88  E-value=2.7e-09  Score=80.27  Aligned_cols=55  Identities=24%  Similarity=0.475  Sum_probs=42.5

Q ss_pred             CCCCceecccccccccCcce-eecCCCCCccchhHHHHHHh-cCCCCcccCcccccCC
Q 021708          104 FKDGLECAVCLSELEDGEKA-RLLPKCNHGFHVECIDMWFQ-SHSTCPLCRNPVDVER  159 (309)
Q Consensus       104 ~~~~~~C~ICl~~~~~~~~~-~~lp~C~H~FH~~Ci~~Wl~-~~~~CP~CR~~i~~~~  159 (309)
                      .+++..|+||++.+...+.. ..++ |||.||..|+..|+. ....||+||..+....
T Consensus         8 ~~~~~~CpICle~~~~~d~~~~p~~-CGH~fC~~Cl~~~~~~~~~~CP~CR~~~~~~~   64 (78)
T 1e4u_A            8 KEDPVECPLCMEPLEIDDINFFPCT-CGYQICRFCWHRIRTDENGLCPACRKPYPEDP   64 (78)
T ss_dssp             CCCCCBCTTTCCBCCTTTTTCCSST-TSCCCCHHHHHHHTTSSCSBCTTTCCBCSSCS
T ss_pred             cccCCcCCccCccCccccccccccC-CCCCcCHHHHHHHHhcCCCCCCCCCCccCCCc
Confidence            45667899999998654433 2344 999999999999984 4577999999987543

>2vje_A E3 ubiquitin-protein ligase MDM2; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_A* 2hdp_A

Probab=98.85  E-value=8.2e-10  Score=79.78  Aligned_cols=47  Identities=19%  Similarity=0.543  Sum_probs=39.5

Q ss_pred             CCceecccccccccCcceeec--CCCCCc-cchhHHHHHHhcCCCCcccCcccc
Q 021708          106 DGLECAVCLSELEDGEKARLL--PKCNHG-FHVECIDMWFQSHSTCPLCRNPVD  156 (309)
Q Consensus       106 ~~~~C~ICl~~~~~~~~~~~l--p~C~H~-FH~~Ci~~Wl~~~~~CP~CR~~i~  156 (309)
                      ++.+|.||++.+.+   ..++  | |||. |+..|+..|...+..||+||..+.
T Consensus         7 ~~~~C~IC~~~~~~---~~~~~~p-CgH~~~C~~C~~~~~~~~~~CPiCR~~i~   56 (64)
T 2vje_A            7 AIEPCVICQGRPKN---GCIVHGK-TGHLMACFTCAKKLKKRNKPCPVCRQPIQ   56 (64)
T ss_dssp             GGSCCTTTSSSCSC---EEEEETT-EEEEEECHHHHHHHHHTTCCCTTTCCCCC
T ss_pred             CcCCCCcCCCCCCC---EEEECCC-CCChhhHHHHHHHHHHcCCcCCCcCcchh
Confidence            44679999998654   3333  8 9999 899999999998899999999885

>1rmd_A RAG1; V(D)J recombination, antibody, MAD, ring finger, zinc binuclear cluster, zinc finger, DNA-binding protein; 2.10A {Mus musculus} SCOP: g.37.1.1 g.44.1.1

Probab=98.85  E-value=1.2e-09  Score=87.53  Aligned_cols=48  Identities=31%  Similarity=0.591  Sum_probs=41.1

Q ss_pred             CceecccccccccCcceeecCCCCCccchhHHHHHHhc-CCCCcccCcccccC
Q 021708          107 GLECAVCLSELEDGEKARLLPKCNHGFHVECIDMWFQS-HSTCPLCRNPVDVE  158 (309)
Q Consensus       107 ~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~Ci~~Wl~~-~~~CP~CR~~i~~~  158 (309)
                      ...|+||++.|.+   ...++ |||.||..||..|+.. +..||+||..+...
T Consensus        23 ~~~C~IC~~~~~~---p~~~~-CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~   71 (116)
T 1rmd_A           23 SISCQICEHILAD---PVETS-CKHLFCRICILRCLKVMGSYCPSCRYPCFPT   71 (116)
T ss_dssp             HTBCTTTCSBCSS---EEECT-TSCEEEHHHHHHHHHHTCSBCTTTCCBCCGG
T ss_pred             CCCCCCCCcHhcC---cEEcC-CCCcccHHHHHHHHhHCcCcCCCCCCCCCHh
Confidence            4679999999875   44576 9999999999999976 77899999998754

>2kr4_A Ubiquitin conjugation factor E4 B; U-BOX, UFD2, ring, E3 ligase, UBL conjugation pathway; NMR {Mus musculus}

Probab=98.82  E-value=2.4e-09  Score=81.67  Aligned_cols=49  Identities=16%  Similarity=0.128  Sum_probs=43.3

Q ss_pred             CCCceecccccccccCcceeecCCCCCccchhHHHHHHhcCCCCcccCccccc
Q 021708          105 KDGLECAVCLSELEDGEKARLLPKCNHGFHVECIDMWFQSHSTCPLCRNPVDV  157 (309)
Q Consensus       105 ~~~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~Ci~~Wl~~~~~CP~CR~~i~~  157 (309)
                      .+.+.|+||++.|.+   .+.++ |||.|+..||..|+..+.+||+||..+..
T Consensus        12 p~~~~CpI~~~~m~d---PV~~~-cGhtf~r~~I~~~l~~~~~cP~~~~~l~~   60 (85)
T 2kr4_A           12 PDEFRDPLMDTLMTD---PVRLP-SGTVMDRSIILRHLLNSPTDPFNRQMLTE   60 (85)
T ss_dssp             CTTTBCTTTCSBCSS---EEECT-TSCEEEHHHHHHHHHHCSBCTTTCCBCCG
T ss_pred             chheECcccCchhcC---CeECC-CCCEECHHHHHHHHhcCCCCCCCcCCCCh
Confidence            456789999999987   66787 99999999999999988999999988764

>2y1n_A E3 ubiquitin-protein ligase; ligase-transferase complex, ubiquitin ring E3 ligase; HET: PTR; 2.00A {Homo sapiens} PDB: 2y1m_A* 4a4c_A* 4a4b_A* 1fbv_A* 3vgo_A 4a49_A* 2k4d_A 2ldr_A*

Probab=98.82  E-value=1.7e-09  Score=103.88  Aligned_cols=48  Identities=25%  Similarity=0.706  Sum_probs=41.5

Q ss_pred             CceecccccccccCcceeecCCCCCccchhHHHHHHh-cCCCCcccCcccccC
Q 021708          107 GLECAVCLSELEDGEKARLLPKCNHGFHVECIDMWFQ-SHSTCPLCRNPVDVE  158 (309)
Q Consensus       107 ~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~Ci~~Wl~-~~~~CP~CR~~i~~~  158 (309)
                      ..+|+||++.+..   +..+| |||.||..|+..|+. .+..||+||..+...
T Consensus       332 ~~~C~ICle~~~~---pv~lp-CGH~FC~~Ci~~wl~~~~~~CP~CR~~i~~~  380 (389)
T 2y1n_A          332 FQLCKICAENDKD---VKIEP-CGHLMCTSCLTSWQESEGQGCPFCRCEIKGT  380 (389)
T ss_dssp             SSBCTTTSSSBCC---EEEET-TCCEECHHHHHHHHHHTCSBCTTTCCBCCEE
T ss_pred             CCCCCccCcCCCC---eEEeC-CCChhhHHHHHHHHhcCCCCCCCCCCccCCc
Confidence            3689999999854   66787 999999999999998 688999999988753

>2kre_A Ubiquitin conjugation factor E4 B; U-box domain, E3 ubiquitin ligase, E4 polyubiquitin chain EL factor, phosphoprotein, UBL conjugation pathway; NMR {Homo sapiens} PDB: 3l1x_A 3l1z_B

Probab=98.81  E-value=3.1e-09  Score=83.57  Aligned_cols=50  Identities=16%  Similarity=0.119  Sum_probs=43.7

Q ss_pred             CCCCceecccccccccCcceeecCCCCCccchhHHHHHHhcCCCCcccCccccc
Q 021708          104 FKDGLECAVCLSELEDGEKARLLPKCNHGFHVECIDMWFQSHSTCPLCRNPVDV  157 (309)
Q Consensus       104 ~~~~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~Ci~~Wl~~~~~CP~CR~~i~~  157 (309)
                      ..+...|+||++.|.+   .+.++ |||.|+..||..|+..+.+||+||..+..
T Consensus        26 ~p~~~~CpI~~~~m~d---PV~~~-cGhtf~r~~I~~~l~~~~~cP~~~~~l~~   75 (100)
T 2kre_A           26 APDEFRDPLMDTLMTD---PVRLP-SGTIMDRSIILRHLLNSPTDPFNRQTLTE   75 (100)
T ss_dssp             CSTTTBCTTTCSBCSS---EEEET-TTEEEEHHHHHHHTTSCSBCSSSCCBCCT
T ss_pred             CcHhhCCcCccCcccC---CeECC-CCCEEchHHHHHHHHcCCCCCCCCCCCCh
Confidence            3456789999999987   66777 99999999999999988999999998864

>2vje_B MDM4 protein; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_B*

Probab=98.79  E-value=1.7e-09  Score=77.86  Aligned_cols=49  Identities=18%  Similarity=0.408  Sum_probs=39.4

Q ss_pred             CCceecccccccccCcceeecCCCCCc-cchhHHHHHHhcCCCCcccCcccc
Q 021708          106 DGLECAVCLSELEDGEKARLLPKCNHG-FHVECIDMWFQSHSTCPLCRNPVD  156 (309)
Q Consensus       106 ~~~~C~ICl~~~~~~~~~~~lp~C~H~-FH~~Ci~~Wl~~~~~CP~CR~~i~  156 (309)
                      ....|.||++...+. .+..+| |||+ |+..|+..|...+..||+||..|.
T Consensus         6 ~~~~C~IC~~~~~~~-~~~~~p-CgH~~~C~~C~~~~~~~~~~CPiCR~~i~   55 (63)
T 2vje_B            6 LLKPCSLCEKRPRDG-NIIHGR-TGHLVTCFHCARRLKKAGASCPICKKEIQ   55 (63)
T ss_dssp             GGSBCTTTSSSBSCE-EEEETT-EEEEEECHHHHHHHHHTTCBCTTTCCBCC
T ss_pred             cCCCCcccCCcCCCe-EEEecC-CCCHhHHHHHHHHHHHhCCcCCCcCchhh
Confidence            346799999986541 122347 9998 999999999988889999999885

>1wgm_A Ubiquitin conjugation factor E4A; ubiquitinating enzyme, KIAA0126, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.2

Probab=98.79  E-value=4.2e-09  Score=82.51  Aligned_cols=49  Identities=20%  Similarity=0.251  Sum_probs=43.1

Q ss_pred             CCCceecccccccccCcceeecCCCC-CccchhHHHHHHhcCCCCcccCccccc
Q 021708          105 KDGLECAVCLSELEDGEKARLLPKCN-HGFHVECIDMWFQSHSTCPLCRNPVDV  157 (309)
Q Consensus       105 ~~~~~C~ICl~~~~~~~~~~~lp~C~-H~FH~~Ci~~Wl~~~~~CP~CR~~i~~  157 (309)
                      .+.+.|+||++.|.+   .+.++ || |.|+..||..|+..+.+||+||..+..
T Consensus        20 p~~~~CpI~~~~m~d---PV~~~-cG~htf~r~cI~~~l~~~~~cP~~~~~l~~   69 (98)
T 1wgm_A           20 CDEFLDPIMSTLMCD---PVVLP-SSRVTVDRSTIARHLLSDQTDPFNRSPLTM   69 (98)
T ss_dssp             CTTTBCTTTCSBCSS---EEECT-TTCCEEEHHHHHHHTTTSCBCTTTCSBCCT
T ss_pred             cHhcCCcCccccccC---CeECC-CCCeEECHHHHHHHHHhCCCCCCCCCCCCh
Confidence            456789999999987   56677 99 999999999999988999999998864

>3k1l_B Fancl; UBC, ring, RWD, ligase; HET: MAL CIT; 3.20A {Drosophila melanogaster}

Probab=98.79  E-value=1.3e-09  Score=102.54  Aligned_cols=53  Identities=26%  Similarity=0.745  Sum_probs=40.6

Q ss_pred             CCCceecccccccccCcce-e---ecCCCCCccchhHHHHHHhcC-----------CCCcccCccccc
Q 021708          105 KDGLECAVCLSELEDGEKA-R---LLPKCNHGFHVECIDMWFQSH-----------STCPLCRNPVDV  157 (309)
Q Consensus       105 ~~~~~C~ICl~~~~~~~~~-~---~lp~C~H~FH~~Ci~~Wl~~~-----------~~CP~CR~~i~~  157 (309)
                      +...+|+||++.+.++..+ .   ..++|+|.||..||.+||+..           .+||+||.+|..
T Consensus       306 e~~~ECaICys~~l~~g~lPdk~C~n~~C~h~FH~~CL~kWLrs~~~sRqSFnvi~G~CPyCr~pIs~  373 (381)
T 3k1l_B          306 NEELRCNICFAYRLDGGEVPLVSCDNAKCVLKCHAVCLEEWFKTLMDGKTFLEVSFGQCPFCKAKLST  373 (381)
T ss_dssp             CSCCSCSSSCCSSCTTCCCCCBCCSCTTCCCCBCSGGGHHHHHHHHSSSCTTTCCEEECTTTCCEEEG
T ss_pred             cCCccCcccceeecCCCCCccccccCCccCCccchHHHHHHHHhCCCccccccccCCCCCCCCCcCCc
Confidence            3456899999999873322 1   123599999999999999652           469999998864

>3knv_A TNF receptor-associated factor 2; cross-brace, alternative splicing, apoptosis, cytoplasm, metal-binding, UBL conjugation, zinc, zinc-finger; 1.90A {Homo sapiens}

Probab=98.77  E-value=1.7e-09  Score=90.26  Aligned_cols=50  Identities=18%  Similarity=0.410  Sum_probs=41.5

Q ss_pred             CCCCceecccccccccCcceeecCCCCCccchhHHHHHHhcCC-CCcccCccccc
Q 021708          104 FKDGLECAVCLSELEDGEKARLLPKCNHGFHVECIDMWFQSHS-TCPLCRNPVDV  157 (309)
Q Consensus       104 ~~~~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~Ci~~Wl~~~~-~CP~CR~~i~~  157 (309)
                      .++...|+||++.|.+   ...++ |||.||..||..|+.... .||+||.++..
T Consensus        28 l~~~~~C~IC~~~~~~---pv~~~-CgH~FC~~Ci~~~~~~~~~~CP~Cr~~~~~   78 (141)
T 3knv_A           28 LEAKYLCSACRNVLRR---PFQAQ-CGHRYCSFCLASILSSGPQNCAACVHEGIY   78 (141)
T ss_dssp             CCGGGBCTTTCSBCSS---EEECT-TSCEEEHHHHHHHGGGSCEECHHHHHTTCC
T ss_pred             CCcCcCCCCCChhhcC---cEECC-CCCccCHHHHHHHHhcCCCCCCCCCCcccc
Confidence            3456789999999876   34566 999999999999997654 89999998754

>1jm7_B BARD1, BRCA1-associated ring domain protein 1; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1

Probab=98.71  E-value=4.3e-09  Score=84.61  Aligned_cols=46  Identities=28%  Similarity=0.678  Sum_probs=39.0

Q ss_pred             CCceecccccccccCcceeec-CCCCCccchhHHHHHHhcCCCCcccCccccc
Q 021708          106 DGLECAVCLSELEDGEKARLL-PKCNHGFHVECIDMWFQSHSTCPLCRNPVDV  157 (309)
Q Consensus       106 ~~~~C~ICl~~~~~~~~~~~l-p~C~H~FH~~Ci~~Wl~~~~~CP~CR~~i~~  157 (309)
                      +...|+||++.|..   ...+ + |||.||..||..|+.  ..||+||..+..
T Consensus        21 ~~~~C~IC~~~~~~---pv~~~~-CgH~fC~~Ci~~~~~--~~CP~Cr~~~~~   67 (117)
T 1jm7_B           21 KLLRCSRCTNILRE---PVCLGG-CEHIFCSNCVSDCIG--TGCPVCYTPAWI   67 (117)
T ss_dssp             HTTSCSSSCSCCSS---CBCCCS-SSCCBCTTTGGGGTT--TBCSSSCCBCSC
T ss_pred             hCCCCCCCChHhhC---ccEeCC-CCCHHHHHHHHHHhc--CCCcCCCCcCcc
Confidence            45689999999875   4455 6 999999999999998  789999999853

>4ic3_A E3 ubiquitin-protein ligase XIAP; ring domain, zinc-finger, E3 ligase; 1.78A {Homo sapiens} PDB: 4ic2_A

Probab=98.71  E-value=2.7e-09  Score=79.09  Aligned_cols=44  Identities=20%  Similarity=0.631  Sum_probs=37.5

Q ss_pred             CCceecccccccccCcceeecCCCCCc-cchhHHHHHHhcCCCCcccCccccc
Q 021708          106 DGLECAVCLSELEDGEKARLLPKCNHG-FHVECIDMWFQSHSTCPLCRNPVDV  157 (309)
Q Consensus       106 ~~~~C~ICl~~~~~~~~~~~lp~C~H~-FH~~Ci~~Wl~~~~~CP~CR~~i~~  157 (309)
                      ++..|.||++.+.+   +..+| |||. ||..|+..|    ..||+||..+..
T Consensus        23 ~~~~C~iC~~~~~~---~~~~p-CgH~~~C~~C~~~~----~~CP~Cr~~i~~   67 (74)
T 4ic3_A           23 EEKLCKICMDRNIA---IVFVP-CGHLVTCKQCAEAV----DKCPMCYTVITF   67 (74)
T ss_dssp             HHTBCTTTSSSBCC---EEEET-TCCBCCCHHHHTTC----SBCTTTCCBCSE
T ss_pred             cCCCCCCCCCCCCC---EEEcC-CCChhHHHHhhhcC----ccCCCcCcCccC
Confidence            34679999999765   66777 9999 999999999    789999998764

>1vyx_A ORF K3, K3RING; zinc-binding protein, ring domain, cross-brace motif; NMR {Human herpesvirus 8} SCOP: g.44.1.3

Probab=98.61  E-value=3.5e-08  Score=70.45  Aligned_cols=48  Identities=25%  Similarity=0.713  Sum_probs=36.9

Q ss_pred             CCCceecccccccccCcceeecCCCC--C---ccchhHHHHHHhc--CCCCcccCcccc
Q 021708          105 KDGLECAVCLSELEDGEKARLLPKCN--H---GFHVECIDMWFQS--HSTCPLCRNPVD  156 (309)
Q Consensus       105 ~~~~~C~ICl~~~~~~~~~~~lp~C~--H---~FH~~Ci~~Wl~~--~~~CP~CR~~i~  156 (309)
                      ++...|.||+++.  ++.+ ++| |.  |   .||..||+.|+..  +.+||+|+..+.
T Consensus         4 ~~~~~CrIC~~~~--~~~l-~~P-C~C~gs~~~~H~~Cl~~W~~~~~~~~C~~C~~~~~   58 (60)
T 1vyx_A            4 EDVPVCWICNEEL--GNER-FRA-CGCTGELENVHRSCLSTWLTISRNTACQICGVVYN   58 (60)
T ss_dssp             CSCCEETTTTEEC--SCCC-CCS-CCCSSGGGSCCHHHHHHHHHHHTCSBCTTTCCBCC
T ss_pred             CCCCEeEEeecCC--CCce-ecC-cCCCCchhhhHHHHHHHHHHhCCCCccCCCCCeee
Confidence            3456899999983  3333 566 65  4   8999999999954  678999998775

>3hcs_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.20A {Homo sapiens}

Probab=98.59  E-value=1.7e-08  Score=86.02  Aligned_cols=52  Identities=27%  Similarity=0.576  Sum_probs=42.7

Q ss_pred             CCCCCceecccccccccCcceeecCCCCCccchhHHHHHHhcC-CCCcccCcccccC
Q 021708          103 DFKDGLECAVCLSELEDGEKARLLPKCNHGFHVECIDMWFQSH-STCPLCRNPVDVE  158 (309)
Q Consensus       103 ~~~~~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~Ci~~Wl~~~-~~CP~CR~~i~~~  158 (309)
                      ...+...|+||++.|.+   .+.++ |||.||..||..|+... ..||+||..+...
T Consensus        14 ~~~~~~~C~IC~~~~~~---pv~~~-CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~   66 (170)
T 3hcs_A           14 PLESKYECPICLMALRE---AVQTP-CGHRFCKACIIKSIRDAGHKCPVDNEILLEN   66 (170)
T ss_dssp             CCCGGGBCTTTCSBCSS---EEECT-TSCEEEHHHHHHHHHHHCSBCTTTCCBCCGG
T ss_pred             CCCCCCCCCCCChhhcC---cEECC-CCCHHHHHHHHHHHHhCCCCCCCCccCcchh
Confidence            34566789999999876   45576 99999999999999664 4899999988653

>2yu4_A E3 SUMO-protein ligase NSE2; SP-ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.59  E-value=2.4e-08  Score=77.32  Aligned_cols=49  Identities=20%  Similarity=0.546  Sum_probs=39.4

Q ss_pred             CCCceecccccccccCcceeecCCCCCccchhHHHHHHhcC------CCCcc--cCcc-cc
Q 021708          105 KDGLECAVCLSELEDGEKARLLPKCNHGFHVECIDMWFQSH------STCPL--CRNP-VD  156 (309)
Q Consensus       105 ~~~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~Ci~~Wl~~~------~~CP~--CR~~-i~  156 (309)
                      ...+.|+||++.|.+   .+.++.|||.|+..||..|+..+      .+||+  |+.. +.
T Consensus         5 ~~~~~CPI~~~~~~d---PV~~~~cGh~f~r~cI~~~l~~~~~~~~~~~CP~tgc~~~~l~   62 (94)
T 2yu4_A            5 SSGFTCPITKEEMKK---PVKNKVCGHTYEEDAIVRMIESRQKRKKKAYCPQIGCSHTDIR   62 (94)
T ss_dssp             SSCCBCTTTCSBCSS---EEEESSSCCEEEHHHHHHHHHHHHTTTCCBCCCSTTCCCCCBC
T ss_pred             CcEeECcCcCchhcC---CEEcCCCCCeecHHHHHHHHHHccCcCCCCCCCcCcCcccccC
Confidence            456789999999986   55564599999999999999653      58999  9866 44

>2ea5_A Cell growth regulator with ring finger domain protein 1; CGRRF1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.56  E-value=4.7e-08  Score=71.35  Aligned_cols=45  Identities=31%  Similarity=0.767  Sum_probs=37.6

Q ss_pred             CCceecccccccccCcceeecCCCCCc-cchhHHHHHHhcCCCCcccCcccccC
Q 021708          106 DGLECAVCLSELEDGEKARLLPKCNHG-FHVECIDMWFQSHSTCPLCRNPVDVE  158 (309)
Q Consensus       106 ~~~~C~ICl~~~~~~~~~~~lp~C~H~-FH~~Ci~~Wl~~~~~CP~CR~~i~~~  158 (309)
                      +...|.||++...+   +.++| |+|+ |+..|+..    ...||+||..|...
T Consensus        14 ~~~~C~IC~~~~~~---~v~~p-CgH~~~C~~C~~~----~~~CP~CR~~i~~~   59 (68)
T 2ea5_A           14 NSKDCVVCQNGTVN---WVLLP-CRHTCLCDGCVKY----FQQCPMCRQFVQES   59 (68)
T ss_dssp             CSSCCSSSSSSCCC---CEETT-TTBCCSCTTHHHH----CSSCTTTCCCCCCE
T ss_pred             CCCCCCCcCcCCCC---EEEEC-CCChhhhHHHHhc----CCCCCCCCcchhce
Confidence            45689999998654   77888 9999 99999984    47899999988753

>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2

Probab=98.55  E-value=3.5e-08  Score=89.50  Aligned_cols=50  Identities=16%  Similarity=0.264  Sum_probs=42.0

Q ss_pred             CCCCceecccccccccCcceeecCCCCCccchhHHHHHHhc-CCCCcccCccccc
Q 021708          104 FKDGLECAVCLSELEDGEKARLLPKCNHGFHVECIDMWFQS-HSTCPLCRNPVDV  157 (309)
Q Consensus       104 ~~~~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~Ci~~Wl~~-~~~CP~CR~~i~~  157 (309)
                      ..+...|+||++.|.+   .+.++ |||.||..||..|+.. +.+||+||.++..
T Consensus       205 ~~~~~~c~i~~~~~~d---Pv~~~-~gh~f~~~~i~~~~~~~~~~cP~~~~~~~~  255 (281)
T 2c2l_A          205 IPDYLCGKISFELMRE---PCITP-SGITYDRKDIEEHLQRVGHFNPVTRSPLTQ  255 (281)
T ss_dssp             CCSTTBCTTTCSBCSS---EEECS-SCCEEETTHHHHHHHHTCSSCTTTCCCCCG
T ss_pred             CCcccCCcCcCCHhcC---CeECC-CCCEECHHHHHHHHHHCCCCCcCCCCCCch
Confidence            3456789999999986   66787 9999999999999975 4559999998864

>2ecg_A Baculoviral IAP repeat-containing protein 4; BIRC4, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.50  E-value=4.9e-08  Score=72.30  Aligned_cols=43  Identities=21%  Similarity=0.629  Sum_probs=35.7

Q ss_pred             CceecccccccccCcceeecCCCCCc-cchhHHHHHHhcCCCCcccCccccc
Q 021708          107 GLECAVCLSELEDGEKARLLPKCNHG-FHVECIDMWFQSHSTCPLCRNPVDV  157 (309)
Q Consensus       107 ~~~C~ICl~~~~~~~~~~~lp~C~H~-FH~~Ci~~Wl~~~~~CP~CR~~i~~  157 (309)
                      ...|.||++.+.+   +..+| |||. ||..|+..    ...||+||..+..
T Consensus        25 ~~~C~IC~~~~~~---~~~~p-CgH~~~C~~C~~~----~~~CP~Cr~~i~~   68 (75)
T 2ecg_A           25 EKLCKICMDRNIA---IVFVP-CGHLVTCKQCAEA----VDKCPMCYTVITF   68 (75)
T ss_dssp             HHSCSSSCSSCCC---BCCSS-SCCCCBCHHHHHH----CSBCTTTCCBCCC
T ss_pred             CCCCCcCCCCCCC---EEEec-CCCHHHHHHHhhC----CCCCccCCceecC
Confidence            4579999999765   56677 9999 99999965    3789999998864

>1wim_A KIAA0161 protein; ring finger domain, UBCM4-interacting protein 4, UIP4, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.1

Probab=98.45  E-value=6.2e-08  Score=74.72  Aligned_cols=48  Identities=21%  Similarity=0.556  Sum_probs=39.6

Q ss_pred             CCceecccccccccCcceeecCCCCCccchhHHHHHHhc--------CCCCcc--cCcc
Q 021708          106 DGLECAVCLSELEDGEKARLLPKCNHGFHVECIDMWFQS--------HSTCPL--CRNP  154 (309)
Q Consensus       106 ~~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~Ci~~Wl~~--------~~~CP~--CR~~  154 (309)
                      +..+|.||++++...+.+.+.+ |+|.||..|+..|+..        ...||.  |+..
T Consensus         4 ~~~~C~IC~~~~~~~~~~~l~~-CgH~FC~~Cl~~~~~~~i~~g~~~~i~CP~~~C~~~   61 (94)
T 1wim_A            4 GSSGCKLCLGEYPVEQMTTIAQ-CQCIFCTLCLKQYVELLIKEGLETAISCPDAACPKQ   61 (94)
T ss_dssp             SBCCCSSSCCCCBGGGEEEETT-TTEEEEHHHHHHHHHHHHHHCSCCCEECSCTTCSSC
T ss_pred             CCcCCcccCcccccccceEcCC-CCCcccHHHHHHHHHHHhhcCCcccccCccccCCCC
Confidence            3467999999998776666666 9999999999999953        236999  9987

>2f42_A STIP1 homology and U-box containing protein 1; chaperone; 2.50A {Danio rerio} PDB: 2c2v_S 2oxq_C

Probab=98.41  E-value=1.3e-07  Score=81.84  Aligned_cols=51  Identities=16%  Similarity=0.267  Sum_probs=42.6

Q ss_pred             CCCCCceecccccccccCcceeecCCCCCccchhHHHHHHhc-CCCCcccCccccc
Q 021708          103 DFKDGLECAVCLSELEDGEKARLLPKCNHGFHVECIDMWFQS-HSTCPLCRNPVDV  157 (309)
Q Consensus       103 ~~~~~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~Ci~~Wl~~-~~~CP~CR~~i~~  157 (309)
                      ...+.+.|+||++.|.+   ++.++ |||.|+..||..|+.. +.+||+|+.++..
T Consensus       102 ~ip~~f~CPI~~elm~D---PV~~~-~Ghtfer~~I~~~l~~~~~tcP~t~~~l~~  153 (179)
T 2f42_A          102 EIPDYLCGKISFELMRE---PCITP-SGITYDRKDIEEHLQRVGHFDPVTRSPLTQ  153 (179)
T ss_dssp             CCCGGGBCTTTCSBCSS---EEECT-TSCEEEHHHHHHHHHHTCSBCTTTCCBCCG
T ss_pred             CCcHhhcccCccccCCC---CeECC-CCCEECHHHHHHHHHhCCCCCCCCcCCCCh
Confidence            44566789999999986   66677 9999999999999976 3579999988764

>2yho_A E3 ubiquitin-protein ligase mylip; ligase, E2 ligase-E3 ligase complex, ring zinc-finger, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 2yhn_A

Probab=98.38  E-value=9.4e-08  Score=71.77  Aligned_cols=44  Identities=30%  Similarity=0.734  Sum_probs=37.1

Q ss_pred             CceecccccccccCcceeecCCCCCc-cchhHHHHHHhcCCCCcccCcccccC
Q 021708          107 GLECAVCLSELEDGEKARLLPKCNHG-FHVECIDMWFQSHSTCPLCRNPVDVE  158 (309)
Q Consensus       107 ~~~C~ICl~~~~~~~~~~~lp~C~H~-FH~~Ci~~Wl~~~~~CP~CR~~i~~~  158 (309)
                      +..|.||++.+.+   +..+| |||. |+..|+..|    ..||+||..+...
T Consensus        18 ~~~C~IC~~~~~~---~v~~p-CgH~~~C~~C~~~~----~~CP~Cr~~i~~~   62 (79)
T 2yho_A           18 AMLCMVCCEEEIN---STFCP-CGHTVCCESCAAQL----QSCPVCRSRVEHV   62 (79)
T ss_dssp             HTBCTTTSSSBCC---EEEET-TCBCCBCHHHHTTC----SBCTTTCCBCCEE
T ss_pred             CCEeEEeCcccCc---EEEEC-CCCHHHHHHHHHhc----CcCCCCCchhhCe
Confidence            4579999998764   67788 9999 999999987    3899999988753

>3t6p_A Baculoviral IAP repeat-containing protein 2; ring, BIR, CARD, UBA, apoptosis, ubiquitin ligase, SMAC/ ubiquitin, caspase, IAP family, SMAC mimetic; 1.90A {Homo sapiens} PDB: 1qbh_A 2l9m_A 3eb5_A 3eb6_A 4auq_B

Probab=98.23  E-value=2e-07  Score=88.47  Aligned_cols=44  Identities=27%  Similarity=0.718  Sum_probs=37.9

Q ss_pred             CCceecccccccccCcceeecCCCCCc-cchhHHHHHHhcCCCCcccCccccc
Q 021708          106 DGLECAVCLSELEDGEKARLLPKCNHG-FHVECIDMWFQSHSTCPLCRNPVDV  157 (309)
Q Consensus       106 ~~~~C~ICl~~~~~~~~~~~lp~C~H~-FH~~Ci~~Wl~~~~~CP~CR~~i~~  157 (309)
                      ++..|+||++.+..   +..+| |||. ||..|+..|    ..||+||..+..
T Consensus       294 ~~~~C~IC~~~~~~---~v~lp-CgH~~fC~~C~~~~----~~CP~CR~~i~~  338 (345)
T 3t6p_A          294 EERTCKVCMDKEVS---VVFIP-CGHLVVCQECAPSL----RKCPICRGIIKG  338 (345)
T ss_dssp             TTCBCTTTSSSBCC---EEEET-TCCEEECTTTGGGC----SBCTTTCCBCCE
T ss_pred             CCCCCCccCCcCCc---eEEcC-CCChhHhHHHHhcC----CcCCCCCCCccC
Confidence            45689999999865   66778 9999 999999998    689999998864

>2bay_A PRE-mRNA splicing factor PRP19; U-BOX, ubiquitin ligase, E3 ligase; 1.50A {Saccharomyces cerevisiae} SCOP: g.44.1.2 PDB: 1n87_A

Probab=98.18  E-value=5.8e-07  Score=64.22  Aligned_cols=48  Identities=19%  Similarity=0.387  Sum_probs=40.6

Q ss_pred             ceecccccccccCcceeecCCCCCccchhHHHHHHhcCCCCcccCcccccC
Q 021708          108 LECAVCLSELEDGEKARLLPKCNHGFHVECIDMWFQSHSTCPLCRNPVDVE  158 (309)
Q Consensus       108 ~~C~ICl~~~~~~~~~~~lp~C~H~FH~~Ci~~Wl~~~~~CP~CR~~i~~~  158 (309)
                      ..|+||++.|.+   ...++.|||.|...||.+||..+.+||+++.++...
T Consensus         4 ~~CpIs~~~m~d---PV~~~~sG~~yer~~I~~~l~~~~~cP~t~~~L~~~   51 (61)
T 2bay_A            4 MLCAISGKVPRR---PVLSPKSRTIFEKSLLEQYVKDTGNDPITNEPLSIE   51 (61)
T ss_dssp             CCCTTTCSCCSS---EEEETTTTEEEEHHHHHHHHHHHSBCTTTCCBCCGG
T ss_pred             EEecCCCCCCCC---CEEeCCCCcEEcHHHHHHHHHhCCCCcCCcCCCChh
Confidence            579999999985   445523999999999999998888999999888654

>3htk_C E3 SUMO-protein ligase MMS21; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae}

Probab=98.09  E-value=1.3e-06  Score=79.52  Aligned_cols=49  Identities=27%  Similarity=0.496  Sum_probs=39.1

Q ss_pred             CCceecccccccccCcceeecCCCCCccchhHHHHHHhcC--CCCcc--cCccccc
Q 021708          106 DGLECAVCLSELEDGEKARLLPKCNHGFHVECIDMWFQSH--STCPL--CRNPVDV  157 (309)
Q Consensus       106 ~~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~Ci~~Wl~~~--~~CP~--CR~~i~~  157 (309)
                      ....|+||++.|.+  .++... |||.|+..||..|+..+  ..||+  |+..+..
T Consensus       180 ~el~CPIcl~~f~D--PVts~~-CGHsFcR~cI~~~~~~~~~~~CPvtGCr~~l~~  232 (267)
T 3htk_C          180 IELTCPITCKPYEA--PLISRK-CNHVFDRDGIQNYLQGYTTRDCPQAACSQVVSM  232 (267)
T ss_dssp             CCSBCTTTSSBCSS--EEEESS-SCCEEEHHHHHHHSTTCSCEECSGGGCSCEECG
T ss_pred             eeeECcCccCcccC--CeeeCC-CCCcccHHHHHHHHHhCCCCCCCcccccCcCch
Confidence            34579999999975  344444 99999999999999764  46999  9997754

>3nw0_A Non-structural maintenance of chromosomes element homolog; E3 ligase, Zn, metal binding protein; 2.92A {Homo sapiens}

Probab=98.03  E-value=5.1e-06  Score=74.94  Aligned_cols=50  Identities=30%  Similarity=0.628  Sum_probs=40.9

Q ss_pred             CceecccccccccCcceeecCCCCCccchhHHHHHHhcCC--CCcccCcccccCC
Q 021708          107 GLECAVCLSELEDGEKARLLPKCNHGFHVECIDMWFQSHS--TCPLCRNPVDVER  159 (309)
Q Consensus       107 ~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~Ci~~Wl~~~~--~CP~CR~~i~~~~  159 (309)
                      ..+|.||.+-+..+   ..++.|+|.||..|+..|++.+.  .||.|+..+....
T Consensus       180 i~~C~iC~~iv~~g---~~C~~C~~~~H~~C~~~~~~~~~~~~CP~C~~~W~~~~  231 (238)
T 3nw0_A          180 VKICNICHSLLIQG---QSCETCGIRMHLPCVAKYFQSNAEPRCPHCNDYWPHEI  231 (238)
T ss_dssp             CCBCTTTCSBCSSC---EECSSSCCEECHHHHHHHTTTCSSCBCTTTCCBCCSCC
T ss_pred             CCcCcchhhHHhCC---cccCccChHHHHHHHHHHHHhCCCCCCCCCCCCCCCCC
Confidence            56899999998865   34556999999999999997654  8999999876543

>3vk6_A E3 ubiquitin-protein ligase hakai; HYB, phosphotyrosine binding domain; 1.90A {Mus musculus}

Probab=97.87  E-value=7.5e-06  Score=63.78  Aligned_cols=46  Identities=28%  Similarity=0.694  Sum_probs=38.1

Q ss_pred             eecccccccccCcceeecCCCCCccchhHHHHHHh-cCCCCcccCccccc
Q 021708          109 ECAVCLSELEDGEKARLLPKCNHGFHVECIDMWFQ-SHSTCPLCRNPVDV  157 (309)
Q Consensus       109 ~C~ICl~~~~~~~~~~~lp~C~H~FH~~Ci~~Wl~-~~~~CP~CR~~i~~  157 (309)
                      .|.+|--.+.  ...|+.| |+|+|+.+|+..|.+ ..++||.|+..|..
T Consensus         3 fC~~C~~Pi~--iygRmIP-CkHvFCydCa~~~~~~~~k~Cp~C~~~V~r   49 (101)
T 3vk6_A            3 FCDKCGLPIK--VYGRMIP-CKHVFCYDCAILHEKKGDKMCPGCSDPVQR   49 (101)
T ss_dssp             BCTTTCSBCS--EEEEEET-TCCEEEHHHHHHHHHTTCCBCTTTCCBCSE
T ss_pred             ecCccCCCeE--EEeeecc-ccccHHHHHHHHHHhccCCCCcCcCCeeee
Confidence            4888877765  3568898 999999999999985 46789999998864

>2lri_C Autoimmune regulator; Zn binding protein domain, apeced, transcription; NMR {Homo sapiens}

Probab=95.09  E-value=0.018  Score=41.30  Aligned_cols=46  Identities=26%  Similarity=0.431  Sum_probs=34.6

Q ss_pred             CCceecccccccccCcceeecCCCCCccchhHHHHHHhc----CCCCcccCccc
Q 021708          106 DGLECAVCLSELEDGEKARLLPKCNHGFHVECIDMWFQS----HSTCPLCRNPV  155 (309)
Q Consensus       106 ~~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~Ci~~Wl~~----~~~CP~CR~~i  155 (309)
                      .+..|.||.+.    ..+...-.|...||..|++..|..    .-.||.|....
T Consensus        11 ~~~~C~vC~~~----~~ll~Cd~C~~~~H~~Cl~P~l~~~P~g~W~C~~C~~~~   60 (66)
T 2lri_C           11 PGARCGVCGDG----TDVLRCTHCAAAFHWRCHFPAGTSRPGTGLRCRSCSGDV   60 (66)
T ss_dssp             TTCCCTTTSCC----TTCEECSSSCCEECHHHHCTTTCCCCSSSCCCTTTTTCC
T ss_pred             CCCCcCCCCCC----CeEEECCCCCCceecccCCCccCcCCCCCEECccccCCC
Confidence            45679999753    345566679999999999998854    34699997543

>1we9_A PHD finger family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2

Probab=92.69  E-value=0.034  Score=39.23  Aligned_cols=49  Identities=22%  Similarity=0.441  Sum_probs=36.4

Q ss_pred             CCCceecccccccccCcceeecCCCCCccchhHHHHHHh-----cCCCCcccCc
Q 021708          105 KDGLECAVCLSELEDGEKARLLPKCNHGFHVECIDMWFQ-----SHSTCPLCRN  153 (309)
Q Consensus       105 ~~~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~Ci~~Wl~-----~~~~CP~CR~  153 (309)
                      ++...|.||...+.++...+..-.|..-||..|+..-..     ....||.|+.
T Consensus         4 ~e~~~C~~C~~~~~~~~~mI~Cd~C~~WfH~~Cvgl~~~~~~~~~~~~C~~C~~   57 (64)
T 1we9_A            4 GSSGQCGACGESYAADEFWICCDLCEMWFHGKCVKITPARAEHIKQYKCPSCSN   57 (64)
T ss_dssp             SSCCCCSSSCCCCCSSSCEEECSSSCCEEETTTTTCCTTGGGGCSSCCCHHHHT
T ss_pred             CCCCCCCCCCCccCCCCCEEEccCCCCCCCccccCcChhHhcCCCcEECCCCcC
Confidence            345679999998865555556656888999999875432     4577999975

>2l5u_A Chromodomain-helicase-DNA-binding protein 4; CHD4, MI2B, MI2-beta, PHD, protein binding, peptide binding metal binding protein; NMR {Homo sapiens}

Probab=92.27  E-value=0.079  Score=37.20  Aligned_cols=47  Identities=23%  Similarity=0.589  Sum_probs=34.1

Q ss_pred             CCCCCceecccccccccCcceeecCCCCCccchhHHHHHHhc----CCCCcccCc
Q 021708          103 DFKDGLECAVCLSELEDGEKARLLPKCNHGFHVECIDMWFQS----HSTCPLCRN  153 (309)
Q Consensus       103 ~~~~~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~Ci~~Wl~~----~~~CP~CR~  153 (309)
                      +..++..|.||...    ..+...-.|...||..|+..-+..    .-.||.|+.
T Consensus         7 ~~~~~~~C~vC~~~----g~ll~CD~C~~~fH~~Cl~p~l~~~p~g~W~C~~C~~   57 (61)
T 2l5u_A            7 ETDHQDYCEVCQQG----GEIILCDTCPRAYHMVCLDPDMEKAPEGKWSCPHCEK   57 (61)
T ss_dssp             SSCCCSSCTTTSCC----SSEEECSSSSCEEEHHHHCTTCCSCCCSSCCCTTGGG
T ss_pred             cCCCCCCCccCCCC----CcEEECCCCChhhhhhccCCCCCCCCCCceECccccc
Confidence            34456789999873    345566568899999999986532    456999964

>2k16_A Transcription initiation factor TFIID subunit 3; protein, alternative splicing, metal-binding, nucleus, phosphoprotein, transcription regulation; NMR {Mus musculus} PDB: 2k17_A*

Probab=91.66  E-value=0.071  Score=38.79  Aligned_cols=52  Identities=19%  Similarity=0.419  Sum_probs=37.2

Q ss_pred             CCCceecccccccccCcceeecCCCCCccchhHHHHHHh----cCCCCcccCccccc
Q 021708          105 KDGLECAVCLSELEDGEKARLLPKCNHGFHVECIDMWFQ----SHSTCPLCRNPVDV  157 (309)
Q Consensus       105 ~~~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~Ci~~Wl~----~~~~CP~CR~~i~~  157 (309)
                      .+...|.||..... ++.++..-.|...||..|+..-+.    ....||.|+..+..
T Consensus        16 ~~~~~C~~C~~~~~-~~~mi~CD~C~~wfH~~Cv~~~~~~~~~~~w~C~~C~~~~~k   71 (75)
T 2k16_A           16 NQIWICPGCNKPDD-GSPMIGCDDCDDWYHWPCVGIMAAPPEEMQWFCPKCANKIKK   71 (75)
T ss_dssp             CEEECBTTTTBCCS-SCCEEECSSSSSEEEHHHHTCSSCCCSSSCCCCTTTHHHHCS
T ss_pred             CCCcCCCCCCCCCC-CCCEEEcCCCCcccccccCCCCccCCCCCCEEChhccCchhh
Confidence            34456999987753 445556666889999999987653    25679999876543

>3lqh_A Histone-lysine N-methyltransferase MLL; PHD finger, bromodomain, leukemia, apoptosis, chromati regulator, DNA-binding, isopeptide bond; 1.72A {Homo sapiens} PDB: 3lqi_A* 3lqj_A* 2kyu_A

Probab=91.35  E-value=0.071  Score=45.85  Aligned_cols=48  Identities=21%  Similarity=0.415  Sum_probs=36.2

Q ss_pred             ceecccccccccCcc---eeecCCCCCccchhHHHHH------Hh-----cCCCCcccCccc
Q 021708          108 LECAVCLSELEDGEK---ARLLPKCNHGFHVECIDMW------FQ-----SHSTCPLCRNPV  155 (309)
Q Consensus       108 ~~C~ICl~~~~~~~~---~~~lp~C~H~FH~~Ci~~W------l~-----~~~~CP~CR~~i  155 (309)
                      ..|+||...+.+++.   .+.+-.|..-||..|+..-      +.     ....||.|+..-
T Consensus         3 ~~CpiC~k~Y~~~~~~~~MIqCd~C~~W~H~~Cvgi~~~~~e~~~~~pe~~~y~Cp~C~~~~   64 (183)
T 3lqh_A            3 NFCPLCDKCYDDDDYESKMMQCGKCDRWVHSKCENLSDEMYEILSNLPESVAYTCVNCTERH   64 (183)
T ss_dssp             CBCTTTCCBCTTCCTTCCEEECTTTCCEEEGGGSSCCHHHHHHHHHSHHHHCCCCTTTCCSS
T ss_pred             CcCCCCcCccCCcccCCCeEECCCCCcccchhccccCHHHHHHhhcCCCCCeeECcCCCCCC
Confidence            469999999988763   6666679999999998532      11     268999998653

>2jun_A Midline-1; B-BOX, TRIM, ring finger, alternative splicing, coiled coil, cytoplasm, cytoskeleton, disease mutation, ligase, metal-binding; NMR {Homo sapiens}

Probab=91.24  E-value=0.1  Score=39.71  Aligned_cols=34  Identities=15%  Similarity=0.417  Sum_probs=24.3

Q ss_pred             CceecccccccccCcceeecCCCCCccchhHHHHH
Q 021708          107 GLECAVCLSELEDGEKARLLPKCNHGFHVECIDMW  141 (309)
Q Consensus       107 ~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~Ci~~W  141 (309)
                      +..|.||++++.......=+. |+|.|+..|+..|
T Consensus         3 e~~C~~C~~~~~~~av~~C~~-C~~~~C~~Cl~~~   36 (101)
T 2jun_A            3 KVLCQFCDQDPAQDAVKTCVT-CEVSYCDECLKAT   36 (101)
T ss_dssp             CCBCTTCCSSSCCBCCEEETT-TTEEECHHHHHHH
T ss_pred             CCCCcCCCCCCCCCceEECCc-CChHHhHHHCHHH
Confidence            467999998753322222254 9999999999983

>1wil_A KIAA1045 protein; ring finger domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: g.50.1.3

Probab=90.46  E-value=0.33  Score=36.42  Aligned_cols=36  Identities=22%  Similarity=0.345  Sum_probs=24.2

Q ss_pred             CCCCceecccccccccCcceeecCCCCCccchhHHHHH
Q 021708          104 FKDGLECAVCLSELEDGEKARLLPKCNHGFHVECIDMW  141 (309)
Q Consensus       104 ~~~~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~Ci~~W  141 (309)
                      ...+..|.||-.- . .+.+.-..-|+-+||..|+.+-
T Consensus        12 ~~~D~~C~VC~~~-t-~~~l~pCRvC~RvfH~~CL~r~   47 (89)
T 1wil_A           12 VVNDEMCDVCEVW-T-AESLFPCRVCTRVFHDGCLRRM   47 (89)
T ss_dssp             CCCSCCCTTTCCC-C-SSCCSSCSSSSSCCCHHHHHHH
T ss_pred             CCCCcccCccccc-c-ccceeccccccccccHhhcccc
Confidence            3466789999743 1 2222223339999999999996

>3u5n_A E3 ubiquitin-protein ligase TRIM33; TRIM33, PHD, bromodomain, TGF-beta, epigenetics, methylation, K9ME3, K14AC, transcription; HET: M3L ALY; 1.95A {Homo sapiens} PDB: 3u5m_A* 3u5o_A* 3u5p_A*

Probab=89.45  E-value=0.091  Score=45.72  Aligned_cols=46  Identities=28%  Similarity=0.489  Sum_probs=34.3

Q ss_pred             CCCceecccccccccCcceeecCCCCCccchhHHHHHHhc----CCCCcccCcc
Q 021708          105 KDGLECAVCLSELEDGEKARLLPKCNHGFHVECIDMWFQS----HSTCPLCRNP  154 (309)
Q Consensus       105 ~~~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~Ci~~Wl~~----~~~CP~CR~~  154 (309)
                      .++..|.+|...    ..+..+-.|...||..|+.+.+..    ...||.|+..
T Consensus         5 ~~~~~C~~C~~~----g~ll~Cd~C~~~~H~~Cl~p~l~~~p~~~W~C~~C~~~   54 (207)
T 3u5n_A            5 PNEDWCAVCQNG----GDLLCCEKCPKVFHLTCHVPTLLSFPSGDWICTFCRDI   54 (207)
T ss_dssp             SSCSSBTTTCCC----EEEEECSSSSCEECTTTSSSCCSSCCSSCCCCTTTSCS
T ss_pred             CCCCCCCCCCCC----CceEEcCCCCCccCCccCCCCCCCCCCCCEEeCceeCc
Confidence            345679999854    336666679999999999887743    3569999854

>1mm2_A MI2-beta; PHD, zinc finger, protein scaffold, DNA binding protein; NMR {Homo sapiens} SCOP: g.50.1.2 PDB: 2l75_A* 1mm3_A

Probab=88.75  E-value=0.15  Score=35.72  Aligned_cols=47  Identities=21%  Similarity=0.525  Sum_probs=32.8

Q ss_pred             CCCceecccccccccCcceeecCCCCCccchhHHHHHHhc----CCCCcccCccc
Q 021708          105 KDGLECAVCLSELEDGEKARLLPKCNHGFHVECIDMWFQS----HSTCPLCRNPV  155 (309)
Q Consensus       105 ~~~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~Ci~~Wl~~----~~~CP~CR~~i  155 (309)
                      .++..|.||.+.    ..+...-.|...||..|+..-|..    .-.||.|+...
T Consensus         7 ~~~~~C~vC~~~----g~ll~Cd~C~~~fH~~Cl~ppl~~~p~g~W~C~~C~~~~   57 (61)
T 1mm2_A            7 HHMEFCRVCKDG----GELLCCDTCPSSYHIHCLNPPLPEIPNGEWLCPRCTCPA   57 (61)
T ss_dssp             SSCSSCTTTCCC----SSCBCCSSSCCCBCSSSSSSCCSSCCSSCCCCTTTTTTC
T ss_pred             CCCCcCCCCCCC----CCEEEcCCCCHHHcccccCCCcCcCCCCccCChhhcCch
Confidence            345679999863    334455568899999999965533    34699997543

>3o36_A Transcription intermediary factor 1-alpha; TRIM24, PHD finger, bromodomain, H4K16 acetylation, breast C transcription-protein binding complex; HET: ALY; 1.70A {Homo sapiens} PDB: 3o33_A* 3o34_A* 3o35_A* 3o37_A

Probab=88.26  E-value=0.12  Score=44.06  Aligned_cols=46  Identities=30%  Similarity=0.569  Sum_probs=33.8

Q ss_pred             CCceecccccccccCcceeecCCCCCccchhHHHHHHhc----CCCCcccCccc
Q 021708          106 DGLECAVCLSELEDGEKARLLPKCNHGFHVECIDMWFQS----HSTCPLCRNPV  155 (309)
Q Consensus       106 ~~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~Ci~~Wl~~----~~~CP~CR~~i  155 (309)
                      ++..|.+|.+.   ++ +..+-.|...||..|+.+-+..    ...||.|+..-
T Consensus         3 ~~~~C~~C~~~---g~-ll~Cd~C~~~~H~~C~~p~l~~~p~~~W~C~~C~~~~   52 (184)
T 3o36_A            3 NEDWCAVCQNG---GE-LLCCEKCPKVFHLSCHVPTLTNFPSGEWICTFCRDLS   52 (184)
T ss_dssp             SCSSCTTTCCC---SS-CEECSSSSCEECTTTSSSCCSSCCSSCCCCTTTSCSS
T ss_pred             CCCccccCCCC---Ce-eeecCCCCcccCccccCCCCCCCCCCCEECccccCcc
Confidence            45679999854   33 5566668899999999887744    35699998543

>1wep_A PHF8; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Mus musculus} SCOP: g.50.1.2

Probab=88.22  E-value=0.58  Score=34.30  Aligned_cols=48  Identities=19%  Similarity=0.355  Sum_probs=33.9

Q ss_pred             CceecccccccccCcceeecCCCCCccchhHHHHHH-----hcCCCCcccCccc
Q 021708          107 GLECAVCLSELEDGEKARLLPKCNHGFHVECIDMWF-----QSHSTCPLCRNPV  155 (309)
Q Consensus       107 ~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~Ci~~Wl-----~~~~~CP~CR~~i  155 (309)
                      ...| ||...+..+...+..-.|..-||..|+.--.     .....||.|+...
T Consensus        12 ~~~C-~C~~~~d~~~~MIqCd~C~~WfH~~Cvgl~~~~~~~~~~~~C~~C~~~~   64 (79)
T 1wep_A           12 PVYC-LCRQPYNVNHFMIECGLCQDWFHGSCVGIEEENAVDIDIYHCPDCEAVF   64 (79)
T ss_dssp             CCCS-TTSCSCCSSSCEEEBTTTCCEEEHHHHTCCHHHHTTCSBBCCTTTTTTS
T ss_pred             ccEE-EcCCccCCCCceEEcCCCCCcEEeeecCcccccccCCCeEECCCccccc
Confidence            3456 9998876455555666699899999996432     1356799998654

>2xb1_A Pygopus homolog 2, B-cell CLL/lymphoma 9-like Pro; fusion protein, signal transduction, transcription, metal BI WNT proteins; 1.90A {Homo sapiens}

Probab=86.97  E-value=0.08  Score=41.37  Aligned_cols=48  Identities=33%  Similarity=0.623  Sum_probs=35.3

Q ss_pred             ceecccccccccCcceeecC-CCCCccchhHHHHHH----------hcCCCCcccCccc
Q 021708          108 LECAVCLSELEDGEKARLLP-KCNHGFHVECIDMWF----------QSHSTCPLCRNPV  155 (309)
Q Consensus       108 ~~C~ICl~~~~~~~~~~~lp-~C~H~FH~~Ci~~Wl----------~~~~~CP~CR~~i  155 (309)
                      ..|.||...+.++...+..- .|..-||..|+.-=-          .....||.|+..-
T Consensus         4 ~~C~iC~~p~~~~~~mi~Cdd~C~~WfH~~CVglt~~~~~~i~~~~~~~~~Cp~C~~~~   62 (105)
T 2xb1_A            4 YPCGACRSEVNDDQDAILCEASCQKWFHRECTGMTESAYGLLTTEASAVWACDLCLKTK   62 (105)
T ss_dssp             CBCTTTCSBCCTTSCEEECTTTTCCEEEGGGTTCCHHHHHHHHHCTTEEECCHHHHHTT
T ss_pred             CCCCCCCCccCCCCCEEEecCCcccccccccCCcCHHHHHhhccCCCCCEECccccCcC
Confidence            46999999987666666664 588899999986332          1456799998653

>2yt5_A Metal-response element-binding transcription factor 2; zinc-regulated factor 1, ZIRF1, metal-response element DNA-binding protein M96; NMR {Mus musculus}

Probab=86.81  E-value=0.14  Score=36.19  Aligned_cols=51  Identities=20%  Similarity=0.460  Sum_probs=35.9

Q ss_pred             CCCceecccccccc-cCcceeecCCCCCccchhHHHHHHh-------cCCCCcccCccc
Q 021708          105 KDGLECAVCLSELE-DGEKARLLPKCNHGFHVECIDMWFQ-------SHSTCPLCRNPV  155 (309)
Q Consensus       105 ~~~~~C~ICl~~~~-~~~~~~~lp~C~H~FH~~Ci~~Wl~-------~~~~CP~CR~~i  155 (309)
                      .++..|.||..... .+..+.....|...||..|+..-+.       ..-.|+.|....
T Consensus         4 ~~~~~C~vC~~~~~~~~~~ll~Cd~C~~~~H~~C~~p~l~~~~~~p~~~W~C~~C~~~~   62 (66)
T 2yt5_A            4 GSSGVCTICQEEYSEAPNEMVICDKCGQGYHQLCHTPHIDSSVIDSDEKWLCRQCVFAT   62 (66)
T ss_dssp             CCCCCBSSSCCCCCBTTBCEEECSSSCCEEETTTSSSCCCHHHHHSSCCCCCHHHHHTT
T ss_pred             CCCCCCCCCCCCCCCCCCCEEECCCCChHHHhhhCCCcccccccCCCCCEECCCCcCcc
Confidence            34567999998643 3345666667999999999986442       345699996543

>2l43_A N-teminal domain from histone H3.3, linker, PHD1 from bromodomain-containing protein...; PHD finger, histone CODE, transcription; NMR {Homo sapiens}

Probab=86.72  E-value=0.21  Score=37.64  Aligned_cols=52  Identities=17%  Similarity=0.489  Sum_probs=36.4

Q ss_pred             CCCceeccccccc-ccCcceeecCCCCCccchhHHHHHH--hcCCCCcccCcccc
Q 021708          105 KDGLECAVCLSEL-EDGEKARLLPKCNHGFHVECIDMWF--QSHSTCPLCRNPVD  156 (309)
Q Consensus       105 ~~~~~C~ICl~~~-~~~~~~~~lp~C~H~FH~~Ci~~Wl--~~~~~CP~CR~~i~  156 (309)
                      +++..|.||...- ...+.+...-.|.-.||..|+..-+  .....||.|.....
T Consensus        23 ~~~~~C~vC~~~~s~~~~~ll~CD~C~~~fH~~Cl~p~~vP~g~W~C~~C~~~~~   77 (88)
T 2l43_A           23 DEDAVCSICMDGESQNSNVILFCDMCNLAVHQECYGVPYIPEGQWLCRHCLQSRA   77 (88)
T ss_dssp             CCCCCCSSCCSSSSCSEEEEEECSSSCCCCCHHHHTCSSCCSSCCCCHHHHHHTT
T ss_pred             CCCCcCCcCCCCCCCCCCCEEECCCCCchhhcccCCCCccCCCceECccccCccc
Confidence            4567899999753 2334566666788999999998644  22456999976543

>2kgg_A Histone demethylase jarid1A; PHD finger, histone modification, leukemia, alternative splicing, chromatin regulator, developmental protein; NMR {Homo sapiens} PDB: 2kgi_A* 3gl6_A*

Probab=86.61  E-value=0.22  Score=33.67  Aligned_cols=43  Identities=19%  Similarity=0.336  Sum_probs=31.1

Q ss_pred             ecccccccccCcceeecC-CCCCccchhHHHHHH----hcCCCCcccC
Q 021708          110 CAVCLSELEDGEKARLLP-KCNHGFHVECIDMWF----QSHSTCPLCR  152 (309)
Q Consensus       110 C~ICl~~~~~~~~~~~lp-~C~H~FH~~Ci~~Wl----~~~~~CP~CR  152 (309)
                      |.+|...+.+++..+..- .|..-||..|+..-.    .....||.|+
T Consensus         5 cc~C~~p~~~~~~mI~Cd~~C~~WfH~~Cvgl~~~~~~~~~~~C~~C~   52 (52)
T 2kgg_A            5 AQNCQRPCKDKVDWVQCDGGCDEWFHQVCVGVSPEMAENEDYICINCA   52 (52)
T ss_dssp             CTTCCCCCCTTCCEEECTTTTCCEEETTTTTCCHHHHHHSCCCCSCC-
T ss_pred             CCCCcCccCCCCcEEEeCCCCCccCcccccCCCccccCCCCEECCCCC
Confidence            778988886666566655 588889999986432    3567899985

>1wee_A PHD finger family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2

Probab=86.54  E-value=0.11  Score=37.63  Aligned_cols=48  Identities=25%  Similarity=0.432  Sum_probs=34.1

Q ss_pred             CCceecccccccccCcceeecCCCCCccchhHHHHHH----hcCCCCcccCcc
Q 021708          106 DGLECAVCLSELEDGEKARLLPKCNHGFHVECIDMWF----QSHSTCPLCRNP  154 (309)
Q Consensus       106 ~~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~Ci~~Wl----~~~~~CP~CR~~  154 (309)
                      ....| ||......++..+..-.|..-||..|+..--    .....||.|+..
T Consensus        15 ~~~~C-~C~~~~~~g~~mI~Cd~C~~W~H~~Cvg~~~~~~~~~~~~C~~C~~~   66 (72)
T 1wee_A           15 WKVDC-KCGTKDDDGERMLACDGCGVWHHTRCIGINNADALPSKFLCFRCIEL   66 (72)
T ss_dssp             SEECC-TTCCCSCCSSCEEECSSSCEEEETTTTTCCTTSCCCSCCCCHHHHHH
T ss_pred             cceEe-eCCCccCCCCcEEECCCCCCccCCeeeccCccccCCCcEECCCccCC
Confidence            34568 7988766565566666798899999987542    335679999753

>2yql_A PHD finger protein 21A; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=86.48  E-value=0.094  Score=36.03  Aligned_cols=46  Identities=24%  Similarity=0.635  Sum_probs=32.1

Q ss_pred             CCCCceecccccccccCcceeecCCCCCccchhHHHHHHhc----CCCCcccCc
Q 021708          104 FKDGLECAVCLSELEDGEKARLLPKCNHGFHVECIDMWFQS----HSTCPLCRN  153 (309)
Q Consensus       104 ~~~~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~Ci~~Wl~~----~~~CP~CR~  153 (309)
                      ..++..|.||...   + .+...-.|...||..|+..-|..    .-.||.|..
T Consensus         6 ~~~~~~C~vC~~~---g-~ll~Cd~C~~~~H~~Cl~ppl~~~p~g~W~C~~C~~   55 (56)
T 2yql_A            6 SGHEDFCSVCRKS---G-QLLMCDTCSRVYHLDCLDPPLKTIPKGMWICPRCQD   55 (56)
T ss_dssp             CSSCCSCSSSCCS---S-CCEECSSSSCEECSSSSSSCCCSCCCSSCCCHHHHC
T ss_pred             CCCCCCCccCCCC---C-eEEEcCCCCcceECccCCCCcCCCCCCceEChhhhC
Confidence            3455679999974   3 35555568999999999865533    335888853

>1wev_A Riken cDNA 1110020M19; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, gene regulation; NMR {Mus musculus} SCOP: g.50.1.2

Probab=85.44  E-value=0.17  Score=38.13  Aligned_cols=50  Identities=22%  Similarity=0.484  Sum_probs=36.6

Q ss_pred             Cceeccccccccc-CcceeecCCCCCccchhHHHHHHh--------cCCCCcccCcccc
Q 021708          107 GLECAVCLSELED-GEKARLLPKCNHGFHVECIDMWFQ--------SHSTCPLCRNPVD  156 (309)
Q Consensus       107 ~~~C~ICl~~~~~-~~~~~~lp~C~H~FH~~Ci~~Wl~--------~~~~CP~CR~~i~  156 (309)
                      +..|.||...-.. +..+.+.-.|...||..|+..-|.        ....|+.|+....
T Consensus        16 ~~~C~vC~~~~~~~~~~ll~CD~C~~~yH~~Cl~Ppl~~~~~~~p~g~W~C~~C~~~~~   74 (88)
T 1wev_A           16 GLACVVCRQMTVASGNQLVECQECHNLYHQDCHKPQVTDKEVNDPRLVWYCARCTRQMK   74 (88)
T ss_dssp             CCSCSSSCCCCCCTTCCEEECSSSCCEEETTTSSSCCCHHHHHCTTCCCCCHHHHHHHC
T ss_pred             CCcCCCCCCCCCCCCCceEECCCCCCeEcCccCCCcccccccCCCCCCeeCccccchhh
Confidence            4579999976332 345667777999999999987653        2456999976554

>2ri7_A Nucleosome-remodeling factor subunit BPTF; zinc finger, alpha-helical bundle, dimethyl-lysine, bromodom chromatin regulator, metal-binding, nucleus; HET: MLY; 1.45A {Homo sapiens} PDB: 2fsa_A* 2f6n_A 2f6j_A* 3qzv_A* 3uv2_A* 3qzt_A* 3qzs_A* 2fui_A 2fuu_A*

Probab=85.03  E-value=0.19  Score=42.27  Aligned_cols=48  Identities=19%  Similarity=0.540  Sum_probs=34.8

Q ss_pred             CCceecccccccccCcceeecCCCCCccchhHHHHHH-----hcCCCCcccCcc
Q 021708          106 DGLECAVCLSELEDGEKARLLPKCNHGFHVECIDMWF-----QSHSTCPLCRNP  154 (309)
Q Consensus       106 ~~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~Ci~~Wl-----~~~~~CP~CR~~  154 (309)
                      +...| +|......+...+.+-.|...||..|+..-.     .....||.|+..
T Consensus         7 ~~~~C-~C~~~~~~~~~mi~Cd~C~~WfH~~Cv~~~~~~~~~~~~~~C~~C~~~   59 (174)
T 2ri7_A            7 TKLYC-ICKTPEDESKFYIGCDRCQNWYHGRCVGILQSEAELIDEYVCPQCQST   59 (174)
T ss_dssp             CCEET-TTTEECCTTSCEEECTTTCCEEEHHHHTCCHHHHTTCSSCCCHHHHHH
T ss_pred             CCcEe-eCCCCCCCCCCEeECCCCCchhChhhcCCchhhccCccCeecCCCcch
Confidence            45678 9998876555566666799999999996322     236679999864

>2ku3_A Bromodomain-containing protein 1; PHD finger, chromatin regulator, metal-binding, finger, signaling protein; NMR {Homo sapiens}

Probab=84.08  E-value=0.35  Score=35.03  Aligned_cols=49  Identities=18%  Similarity=0.532  Sum_probs=34.4

Q ss_pred             CCCceeccccccc-ccCcceeecCCCCCccchhHHHHHH--hcCCCCcccCc
Q 021708          105 KDGLECAVCLSEL-EDGEKARLLPKCNHGFHVECIDMWF--QSHSTCPLCRN  153 (309)
Q Consensus       105 ~~~~~C~ICl~~~-~~~~~~~~lp~C~H~FH~~Ci~~Wl--~~~~~CP~CR~  153 (309)
                      .++..|.||...- .+++.+...-.|.-.||..|+..-.  ...-.||.|+.
T Consensus        14 ~~~~~C~vC~~~~s~~~~~ll~CD~C~~~~H~~Cl~~~~vP~g~W~C~~C~~   65 (71)
T 2ku3_A           14 DEDAVCSICMDGESQNSNVILFCDMCNLAVHQECYGVPYIPEGQWLCRHCLQ   65 (71)
T ss_dssp             CSSCSCSSSCCCCCCSSSCEEECSSSCCEEEHHHHTCSSCCSSCCCCHHHHH
T ss_pred             CCCCCCCCCCCCCCCCCCCEEECCCCCCccccccCCCCcCCCCCcCCccCcC
Confidence            3456799998763 3445666666799999999998643  22446888864

>2vpb_A Hpygo1, pygopus homolog 1; gene regulation, WNT signaling pathway, WNT signaling complex, chromosomal rearrangement, signaling protein; 1.59A {Homo sapiens} PDB: 2vpd_A 2yyr_A* 2dx8_A* 2vp7_A 2vpg_A* 2vpe_A*

Probab=83.56  E-value=0.68  Score=32.85  Aligned_cols=47  Identities=28%  Similarity=0.540  Sum_probs=33.7

Q ss_pred             CCceecccccccccCcceeecC-CCCCccchhHHHHHHh----------cCCCCcccC
Q 021708          106 DGLECAVCLSELEDGEKARLLP-KCNHGFHVECIDMWFQ----------SHSTCPLCR  152 (309)
Q Consensus       106 ~~~~C~ICl~~~~~~~~~~~lp-~C~H~FH~~Ci~~Wl~----------~~~~CP~CR  152 (309)
                      ....|.+|...+..++..+..- .|.--||..|+.-=-.          ....||.|.
T Consensus         7 ~~~~C~~C~~p~~~~~~mI~CD~~C~~WfH~~Cvglt~~~~~~l~~e~~~~w~C~~C~   64 (65)
T 2vpb_A            7 PVYPCGICTNEVNDDQDAILCEASCQKWFHRICTGMTETAYGLLTAEASAVWGCDTCM   64 (65)
T ss_dssp             --CBCTTTCSBCCTTSCEEEBTTTTCCEEEHHHHTCCHHHHHHHHHCTTEEECCHHHH
T ss_pred             CcCcCccCCCccCCCCCeEecccCccccCchhccCCCHHHHHHhhccCCCcEECcCcc
Confidence            3457999999988777777776 6999999999853321          145688875

>2lbm_A Transcriptional regulator ATRX; metal binding protein-structural protein compl; HET: M3L; NMR {Homo sapiens} PDB: 2ld1_A

Probab=83.03  E-value=1.3  Score=36.48  Aligned_cols=46  Identities=20%  Similarity=0.374  Sum_probs=33.1

Q ss_pred             CCCCceecccccccccCcceeecCCCCCccchhHHHHHHh-----------cCCCCcccCc
Q 021708          104 FKDGLECAVCLSELEDGEKARLLPKCNHGFHVECIDMWFQ-----------SHSTCPLCRN  153 (309)
Q Consensus       104 ~~~~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~Ci~~Wl~-----------~~~~CP~CR~  153 (309)
                      ..++..|.+|.+-   ++ +...-.|-..||..||..-+.           ....||+|+.
T Consensus        60 Dg~~d~C~vC~~G---G~-LlcCD~Cpr~Fh~~Cl~p~l~~~~l~~i~~p~~~W~C~~C~~  116 (142)
T 2lbm_A           60 DGMDEQCRWCAEG---GN-LICCDFCHNAFCKKCILRNLGRKELSTIMDENNQWYCYICHP  116 (142)
T ss_dssp             TSCBCSCSSSCCC---SS-EEECSSSCCEEEHHHHHHHTCHHHHHHHHTSTTCCCCTTTCC
T ss_pred             CCCCCeecccCCC---Cc-EEeCCCCCCeeeHhhcCCCCChhhhhhcccCCCCCEeecccC
Confidence            3456789999965   33 445556889999999997652           2456999973

>1xwh_A Autoimmune regulator; PHD domain, Zn binding domain, apeced, nucleosome, E3 ligase, transcription; NMR {Homo sapiens} PDB: 2ke1_A 2kft_A

Probab=82.93  E-value=0.37  Score=34.15  Aligned_cols=45  Identities=29%  Similarity=0.619  Sum_probs=32.5

Q ss_pred             CCCceecccccccccCcceeecCCCCCccchhHHHHHHhc----CCCCcccCc
Q 021708          105 KDGLECAVCLSELEDGEKARLLPKCNHGFHVECIDMWFQS----HSTCPLCRN  153 (309)
Q Consensus       105 ~~~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~Ci~~Wl~~----~~~CP~CR~  153 (309)
                      .++..|.||.+.   + .+...-.|...||..|+..-|..    .-.||.|..
T Consensus         6 ~~~~~C~vC~~~---g-~ll~CD~C~~~fH~~Cl~ppl~~~P~g~W~C~~C~~   54 (66)
T 1xwh_A            6 KNEDECAVCRDG---G-ELICCDGCPRAFHLACLSPPLREIPSGTWRCSSCLQ   54 (66)
T ss_dssp             SCCCSBSSSSCC---S-SCEECSSCCCEECTTTSSSCCSSCCSSCCCCHHHHH
T ss_pred             CCCCCCccCCCC---C-CEEEcCCCChhhcccccCCCcCcCCCCCeECccccC
Confidence            355679999864   3 35555568899999999865533    445999964

>1wem_A Death associated transcription factor 1; structural genomics, PHD domain, death inducer- obliterator 1(DIO-1); NMR {Mus musculus} SCOP: g.50.1.2

Probab=82.56  E-value=0.5  Score=34.31  Aligned_cols=46  Identities=22%  Similarity=0.498  Sum_probs=32.0

Q ss_pred             ceecccccccccCcceeecCCCCCccchhHHHHHH---------hcCCCCcccCccc
Q 021708          108 LECAVCLSELEDGEKARLLPKCNHGFHVECIDMWF---------QSHSTCPLCRNPV  155 (309)
Q Consensus       108 ~~C~ICl~~~~~~~~~~~lp~C~H~FH~~Ci~~Wl---------~~~~~CP~CR~~i  155 (309)
                      ..| ||...... ...+..-.|..-||..|+..-.         .....||.|+..-
T Consensus        17 ~~C-~C~~~~~~-~~MI~Cd~C~~WfH~~Cvgl~~~~~~~l~~~~~~~~C~~C~~~~   71 (76)
T 1wem_A           17 LYC-ICRQPHNN-RFMICCDRCEEWFHGDCVGISEARGRLLERNGEDYICPNCTILS   71 (76)
T ss_dssp             CCS-TTCCCCCS-SCEEECSSSCCEEEHHHHSCCHHHHHHHHHHTCCCCCHHHHHHS
T ss_pred             CEE-ECCCccCC-CCEEEeCCCCCcEeCeEEccchhhhhhccCCCCeEECcCCcCcc
Confidence            457 89888653 3445555699999999985322         2478899997543

>1fp0_A KAP-1 corepressor; PHD domain, C3HC4 type zinc binding domain, -structure, transcription; NMR {Homo sapiens} SCOP: g.50.1.2

Probab=82.39  E-value=1  Score=34.02  Aligned_cols=46  Identities=26%  Similarity=0.591  Sum_probs=33.5

Q ss_pred             CCCceecccccccccCcceeecCCCCCccchhHHHHHHhc----CCCCcccCcc
Q 021708          105 KDGLECAVCLSELEDGEKARLLPKCNHGFHVECIDMWFQS----HSTCPLCRNP  154 (309)
Q Consensus       105 ~~~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~Ci~~Wl~~----~~~CP~CR~~  154 (309)
                      .++..|.+|...   + .+.....|.-.||..|+++=|..    ...||.|+..
T Consensus        23 ~n~~~C~vC~~~---g-~LL~CD~C~~~fH~~Cl~PpL~~~P~g~W~C~~C~~~   72 (88)
T 1fp0_A           23 DSATICRVCQKP---G-DLVMCNQCEFCFHLDCHLPALQDVPGEEWSCSLCHVL   72 (88)
T ss_dssp             SSSSCCSSSCSS---S-CCEECTTSSCEECTTSSSTTCCCCCSSSCCCCSCCCC
T ss_pred             CCCCcCcCcCCC---C-CEEECCCCCCceecccCCCCCCCCcCCCcCCccccCC
Confidence            445689999964   3 35556568889999999876643    4469999753

>1weu_A Inhibitor of growth family, member 4; structural genomics, PHD domain, ING1-like protein, DNA binding protein, NPPSFA; NMR {Mus musculus} SCOP: g.50.1.2

Probab=81.49  E-value=1.1  Score=33.97  Aligned_cols=47  Identities=23%  Similarity=0.518  Sum_probs=29.1

Q ss_pred             CCceecccccccccCcceeecCC--CC-CccchhHHHHHH--hcCCCCcccCccc
Q 021708          106 DGLECAVCLSELEDGEKARLLPK--CN-HGFHVECIDMWF--QSHSTCPLCRNPV  155 (309)
Q Consensus       106 ~~~~C~ICl~~~~~~~~~~~lp~--C~-H~FH~~Ci~~Wl--~~~~~CP~CR~~i  155 (309)
                      +...| ||..... ++ ++..-.  |. ..||..|+..--  ..+..||.|+..-
T Consensus        35 e~~yC-iC~~~~~-g~-MI~CD~~dC~~~WfH~~CVgl~~~p~g~W~Cp~C~~~~   86 (91)
T 1weu_A           35 EPTYC-LCHQVSY-GE-MIGCDNPDCSIEWFHFACVGLTTKPRGKWFCPRCSQES   86 (91)
T ss_dssp             CCBCS-TTCCBCC-SC-CCCCSCSSCSCCCCCSTTTTCSSCCCSSCCCTTTCCCC
T ss_pred             CCcEE-ECCCCCC-CC-EeEecCCCCCCCCEecccCCcCcCCCCCEECcCccCcC
Confidence            34557 9988643 33 334444  55 579999998211  1256799997543

>1f62_A Transcription factor WSTF; Zn-finger; NMR {Homo sapiens} SCOP: g.50.1.2

Probab=81.04  E-value=0.77  Score=30.53  Aligned_cols=44  Identities=32%  Similarity=0.705  Sum_probs=30.4

Q ss_pred             eecccccccccCcceeecCCCCCccchhHHHHHHhc----CCCCcccCc
Q 021708          109 ECAVCLSELEDGEKARLLPKCNHGFHVECIDMWFQS----HSTCPLCRN  153 (309)
Q Consensus       109 ~C~ICl~~~~~~~~~~~lp~C~H~FH~~Ci~~Wl~~----~~~CP~CR~  153 (309)
                      .|.||...-. ++.+...-.|...||..|++.=+..    .-.||.|+.
T Consensus         2 ~C~vC~~~~~-~~~ll~Cd~C~~~~H~~Cl~p~l~~~P~g~W~C~~C~~   49 (51)
T 1f62_A            2 RCKVCRKKGE-DDKLILCDECNKAFHLFCLRPALYEVPDGEWQCPACQP   49 (51)
T ss_dssp             CCTTTCCSSC-CSCCEECTTTCCEECHHHHCTTCCSCCSSCCSCTTTSC
T ss_pred             CCCCCCCCCC-CCCEEECCCCChhhCcccCCCCcCCCCCCcEECcCccc
Confidence            4889987633 3345556569999999999765533    345999964

>2puy_A PHD finger protein 21A; PHD finger, histone CODE, BRAF-HDAC complex, transcription; 1.43A {Homo sapiens}

Probab=81.01  E-value=0.18  Score=35.06  Aligned_cols=47  Identities=23%  Similarity=0.631  Sum_probs=33.3

Q ss_pred             CCceecccccccccCcceeecCCCCCccchhHHHHHHhc----CCCCcccCcccc
Q 021708          106 DGLECAVCLSELEDGEKARLLPKCNHGFHVECIDMWFQS----HSTCPLCRNPVD  156 (309)
Q Consensus       106 ~~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~Ci~~Wl~~----~~~CP~CR~~i~  156 (309)
                      ++..|.||...   + .+...-.|...||..|+..-+..    .-.||.|.....
T Consensus         4 ~~~~C~vC~~~---g-~ll~Cd~C~~~fH~~Cl~ppl~~~p~g~W~C~~C~~~~~   54 (60)
T 2puy_A            4 HEDFCSVCRKS---G-QLLMCDTCSRVYHLDCLDPPLKTIPKGMWICPRCQDQML   54 (60)
T ss_dssp             CCSSCTTTCCC---S-SCEECSSSSCEECGGGSSSCCSSCCCSCCCCHHHHHHHH
T ss_pred             CCCCCcCCCCC---C-cEEEcCCCCcCEECCcCCCCcCCCCCCceEChhccChhh
Confidence            35679999874   3 45555569999999999965533    345999976543

>3ql9_A Transcriptional regulator ATRX; zinc finger, transcription, lysine trimethylation, protein, histone-binding protein, transcription-structural complex; HET: M3L; 0.93A {Homo sapiens} PDB: 3qla_A* 3qlc_A 3qln_A 2jm1_A

Probab=80.58  E-value=1.7  Score=35.09  Aligned_cols=47  Identities=17%  Similarity=0.328  Sum_probs=32.6

Q ss_pred             CCCCCceecccccccccCcceeecCCCCCccchhHHHHHH-----------hcCCCCcccCc
Q 021708          103 DFKDGLECAVCLSELEDGEKARLLPKCNHGFHVECIDMWF-----------QSHSTCPLCRN  153 (309)
Q Consensus       103 ~~~~~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~Ci~~Wl-----------~~~~~CP~CR~  153 (309)
                      +..++..|.||.+-    -.+...-.|-..||..||..-+           ...-.|++|+.
T Consensus        53 ~Dg~~~~C~vC~dG----G~LlcCd~Cpr~Fc~~Cl~~~lg~~~l~~i~~~~~~W~C~~C~~  110 (129)
T 3ql9_A           53 SDGMDEQCRWCAEG----GNLICCDFCHNAFCKKCILRNLGRRELSTIMDENNQWYCYICHP  110 (129)
T ss_dssp             TTSCBSSCTTTCCC----SEEEECSSSSCEEEHHHHHHHTCHHHHHHHTCTTSCCCCTTTCC
T ss_pred             CCCCCCcCeecCCC----CeeEecCCCchhhhHHHhCCCcchhHHHHhccCCCCeEcCCcCC
Confidence            34455679999964    3344555688999999999753           12356999964

>3v43_A Histone acetyltransferase KAT6A; MOZ, PHD finger, transferase-structural protein; 1.47A {Homo sapiens} PDB: 2ln0_A

Probab=80.37  E-value=0.5  Score=37.01  Aligned_cols=45  Identities=27%  Similarity=0.710  Sum_probs=32.2

Q ss_pred             eecccccccccCcceeecCCCCCccchhHHHHHHhc----CCCCcccCc
Q 021708          109 ECAVCLSELEDGEKARLLPKCNHGFHVECIDMWFQS----HSTCPLCRN  153 (309)
Q Consensus       109 ~C~ICl~~~~~~~~~~~lp~C~H~FH~~Ci~~Wl~~----~~~CP~CR~  153 (309)
                      .|.||...-.+.+.+...-.|...||..|+++-|..    .-.||.|+.
T Consensus        63 ~C~vC~~~~~~~~~ll~Cd~C~~~yH~~Cl~p~l~~~P~~~W~C~~C~~  111 (112)
T 3v43_A           63 TCSSCRDQGKNADNMLFCDSCDRGFHMECCDPPLTRMPKGMWICQICRP  111 (112)
T ss_dssp             CBTTTCCCCCTTCCCEECTTTCCEECGGGCSSCCSSCCSSCCCCTTTSC
T ss_pred             ccccccCcCCCccceEEcCCCCCeeecccCCCCCCCCCCCCeECCCCCC
Confidence            588888653333456666669999999999876643    346999974

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	309
d1iyma_	55	g.44.1.1 (A:) EL5 RING-H2 domain {Rice (Oryza sati	2e-23
d1chca_	68	g.44.1.1 (A:) Immediate early protein, IEEHV {Equi	1e-14
d1ur6b_	52	g.44.1.1 (B:) Not-4 N-terminal RING finger domain	4e-13
d3dplr1	88	g.44.1.1 (R:19-106) RIGG-box protein 1 (RBX1) of S	9e-13
d1g25a_	65	g.44.1.1 (A:) TFIIH Mat1 subunit {Human (Homo sapi	6e-12
d1fbva4	79	g.44.1.1 (A:356-434) CBL {Human (Homo sapiens) [Ta	5e-11
d1bora_	56	g.44.1.1 (A:) Acute promyelocytic leukaemia proto-	7e-11
d1vyxa_	60	g.44.1.3 (A:) IE1B protein (ORF K3), N-terminal do	2e-09
d1v87a_	114	g.44.1.1 (A:) Deltex protein 2 RING-H2 domain {Mou	8e-09
d1jm7a_	103	g.44.1.1 (A:) brca1 RING domain {Human (Homo sapie	1e-08
d1rmda2	86	g.44.1.1 (A:1-86) V(D)J recombination activating p	6e-08
d1jm7b_	97	g.44.1.1 (B:) bard1 RING domain {Human (Homo sapie	2e-06
d1wima_	94	g.44.1.1 (A:) UbcM4-interacting protein 4 (KIAA016	2e-05
d2baya1	56	g.44.1.2 (A:1-56) Pre-mRNA splicing factor Prp19 {	3e-05

>d1iyma_ g.44.1.1 (A:) EL5 RING-H2 domain {Rice (Oryza sativa) [TaxId: 4530]} Length = 55

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: EL5 RING-H2 domain
species: Rice (Oryza sativa) [TaxId: 4530]

 Score = 88.8 bits (220), Expect = 2e-23
 Identities = 39/53 (73%), Positives = 44/53 (83%)

Query: 105 KDGLECAVCLSELEDGEKARLLPKCNHGFHVECIDMWFQSHSTCPLCRNPVDV 157
            DG+ECAVCL+ELEDGE+AR LP+C HGFH EC+DMW  SHSTCPLCR  V V
Sbjct: 3   DDGVECAVCLAELEDGEEARFLPRCGHGFHAECVDMWLGSHSTCPLCRLTVVV 55

>d1chca_ g.44.1.1 (A:) Immediate early protein, IEEHV {Equine herpesvirus 1 [TaxId: 10326]} Length = 68

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: Immediate early protein, IEEHV
species: Equine herpesvirus 1 [TaxId: 10326]

 Score = 65.4 bits (159), Expect = 1e-14
 Identities = 16/48 (33%), Positives = 23/48 (47%), Gaps = 3/48 (6%)

Query: 109 ECAVCLSELEDGEKARLLPKCNHGFHVECIDMWFQSHSTCPLCRNPVD 156
            C +CL +  +         C H F   CI  W + + TCPLC+ PV+
Sbjct: 7   RCPICLEDPSNYSM---ALPCLHAFCYVCITRWIRQNPTCPLCKVPVE 51

>d1ur6b_ g.44.1.1 (B:) Not-4 N-terminal RING finger domain {Human (Homo sapiens) [TaxId: 9606]} Length = 52

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: Not-4 N-terminal RING finger domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 60.9 bits (147), Expect = 4e-13
 Identities = 12/52 (23%), Positives = 19/52 (36%), Gaps = 1/52 (1%)

Query: 108 LECAVCLSELEDGEKARLLPKCNHGFHVECIDMWFQSHST-CPLCRNPVDVE 158
           +EC +C+  LE  +       C +     C        +  CP CR P   +
Sbjct: 1   VECPLCMEPLEIDDINFFPCTCGYQICRFCWHRIRTDENGLCPACRKPYPED 52

>d3dplr1 g.44.1.1 (R:19-106) RIGG-box protein 1 (RBX1) of SCF ubiquitin ligase complex {Human (Homo sapiens) [TaxId: 9606]} Length = 88

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: RIGG-box protein 1 (RBX1) of SCF ubiquitin ligase complex
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 60.9 bits (147), Expect = 9e-13
 Identities = 15/65 (23%), Positives = 23/65 (35%), Gaps = 14/65 (21%)

Query: 109 ECAVCLSELEDGEKARLLP--------------KCNHGFHVECIDMWFQSHSTCPLCRNP 154
            CA+C + + D                       CNH FH  CI  W ++   CPL    
Sbjct: 23  NCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDNRE 82

Query: 155 VDVER 159
            + ++
Sbjct: 83  WEFQK 87

>d1g25a_ g.44.1.1 (A:) TFIIH Mat1 subunit {Human (Homo sapiens) [TaxId: 9606]} Length = 65

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: TFIIH Mat1 subunit
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 57.9 bits (139), Expect = 6e-12
 Identities = 13/53 (24%), Positives = 19/53 (35%), Gaps = 2/53 (3%)

Query: 106 DGLECAVCLSELEDGEKARLLP-KCNHGFHVECIDMWFQ-SHSTCPLCRNPVD 156
           D   C  C +        +L+   C H     C+D+ F      CP C  P+ 
Sbjct: 2   DDQGCPRCKTTKYRNPSLKLMVNVCGHTLCESCVDLLFVRGAGNCPECGTPLR 54

>d1fbva4 g.44.1.1 (A:356-434) CBL {Human (Homo sapiens) [TaxId: 9606]} Length = 79

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: CBL
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 55.8 bits (134), Expect = 5e-11
 Identities = 13/48 (27%), Positives = 20/48 (41%), Gaps = 5/48 (10%)

Query: 110 CAVCLSELEDGEKARLLPKCNHGFHVECIDMWFQS-HSTCPLCRNPVD 156
           C +C    +D    ++ P C H     C+  W +S    CP CR  + 
Sbjct: 26  CKICAENDKD---VKIEP-CGHLMCTSCLTSWQESEGQGCPFCRCEIK 69

>d1bora_ g.44.1.1 (A:) Acute promyelocytic leukaemia proto-oncoprotein PML {Human (Homo sapiens) [TaxId: 9606]} Length = 56

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: Acute promyelocytic leukaemia proto-oncoprotein PML
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 54.9 bits (132), Expect = 7e-11
 Identities = 15/55 (27%), Positives = 26/55 (47%), Gaps = 8/55 (14%)

Query: 101 QQDFKDGLECAVCLSELEDGEKARLLPKCNHGFHVECIDMWFQSHSTCPLCRNPV 155
           +++F+  L C  C +E +     +LLP C H     C++        CP+C+ P 
Sbjct: 1   EEEFQF-LRCQQCQAEAKC---PKLLP-CLHTLCSGCLEAS---GMQCPICQAPW 47

>d1vyxa_ g.44.1.3 (A:) IE1B protein (ORF K3), N-terminal domain {Kaposi's sarcoma-associated herpesvirus, KSHV, HHV8 [TaxId: 37296]} Length = 60

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: Variant RING domain
domain: IE1B protein (ORF K3), N-terminal domain
species: Kaposi's sarcoma-associated herpesvirus, KSHV, HHV8 [TaxId: 37296]

 Score = 50.6 bits (120), Expect = 2e-09
 Identities = 10/58 (17%), Positives = 18/58 (31%), Gaps = 3/58 (5%)

Query: 103 DFKDGLECAVCLSELEDGEKARLLPK-CNHGFHVECIDMWFQSH--STCPLCRNPVDV 157
           + +D   C +C  EL +               H  C+  W      + C +C    + 
Sbjct: 2   EDEDVPVCWICNEELGNERFRACGCTGELENVHRSCLSTWLTISRNTACQICGVVYNT 59

>d1v87a_ g.44.1.1 (A:) Deltex protein 2 RING-H2 domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 114

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: Deltex protein 2 RING-H2 domain
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 50.8 bits (120), Expect = 8e-09
 Identities = 13/67 (19%), Positives = 23/67 (34%), Gaps = 5/67 (7%)

Query: 109 ECAVCLSELEDGEKARLLPKCNHGFHVECIDMWFQS-----HSTCPLCRNPVDVERSNNG 163
              +  S+         L KC+H FH+ C+   + +        CP C+     +     
Sbjct: 41  YSDMTDSKALGPMVVGRLTKCSHAFHLLCLLAMYCNGNKDGSLQCPSCKTIYGEKTGTQP 100

Query: 164 NGEPSVE 170
            G+  V 
Sbjct: 101 WGKMEVF 107

>d1jm7a_ g.44.1.1 (A:) brca1 RING domain {Human (Homo sapiens) [TaxId: 9606]} Length = 103

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: brca1 RING domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 49.7 bits (118), Expect = 1e-08
 Identities = 14/60 (23%), Positives = 23/60 (38%), Gaps = 7/60 (11%)

Query: 102 QDFKDGLECAVCLSELEDGEKARLLPKCNHGFHVECIDMWFQSHS---TCPLCRNPVDVE 158
              +  LEC +CL  +++         C+H F   C+            CPLC+N +   
Sbjct: 16  NAMQKILECPICLELIKE---PVSTK-CDHIFCKFCMLKLLNQKKGPSQCPLCKNDITKR 71

>d1rmda2 g.44.1.1 (A:1-86) V(D)J recombination activating protein 1 (RAG1), dimerization domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 86

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: V(D)J recombination activating protein 1 (RAG1), dimerization domain
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 47.6 bits (113), Expect = 6e-08
 Identities = 16/56 (28%), Positives = 20/56 (35%), Gaps = 5/56 (8%)

Query: 102 QDFKDGLECAVCLSELEDGEKARLLPKCNHGFHVECIDMWFQSH-STCPLCRNPVD 156
             F   + C +C   L D     +   C H F   CI    +   S CP CR P  
Sbjct: 18  AHFVKSISCQICEHILAD----PVETSCKHLFCRICILRCLKVMGSYCPSCRYPCF 69

>d1jm7b_ g.44.1.1 (B:) bard1 RING domain {Human (Homo sapiens) [TaxId: 9606]} Length = 97

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: bard1 RING domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.6 bits (102), Expect = 2e-06
 Identities = 13/57 (22%), Positives = 22/57 (38%), Gaps = 5/57 (8%)

Query: 102 QDFKDGLECAVCLSELEDGEKARLLPKCNHGFHVECIDMWFQSHSTCPLCRNPVDVE 158
              +  L C+ C + L +      L  C H F   C+     +   CP+C  P  ++
Sbjct: 17  DRLEKLLRCSRCTNILREPVC---LGGCEHIFCSNCVSDCIGTG--CPVCYTPAWIQ 68

>d1wima_ g.44.1.1 (A:) UbcM4-interacting protein 4 (KIAA0161) {Human (Homo sapiens) [TaxId: 9606]} Length = 94

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: UbcM4-interacting protein 4 (KIAA0161)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.8 bits (95), Expect = 2e-05
 Identities = 10/57 (17%), Positives = 17/57 (29%), Gaps = 9/57 (15%)

Query: 109 ECAVCLSELEDGEKARLLPKCNHGFHVECIDMWFQSHS--------TCPLCRNPVDV 157
            C +CL E    +   +   C   F   C+  + +           +CP    P   
Sbjct: 7   GCKLCLGEYPVEQMTTIAQ-CQCIFCTLCLKQYVELLIKEGLETAISCPDAACPKQG 62

>d2baya1 g.44.1.2 (A:1-56) Pre-mRNA splicing factor Prp19 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 56

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: U-box
domain: Pre-mRNA splicing factor Prp19
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 38.6 bits (89), Expect = 3e-05
 Identities = 8/51 (15%), Positives = 18/51 (35%), Gaps = 3/51 (5%)

Query: 108 LECAVCLSELEDGEKARLLPKCNHGFHVECIDMWFQSHSTCPLCRNPVDVE 158
           + CA+          +   PK    F    ++ + +     P+   P+ +E
Sbjct: 1   MLCAISGKVPRRPVLS---PKSRTIFEKSLLEQYVKDTGNDPITNEPLSIE 48

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	309
d1iyma_	55	EL5 RING-H2 domain {Rice (Oryza sativa) [TaxId: 45	99.68
d1v87a_	114	Deltex protein 2 RING-H2 domain {Mouse (Mus muscul	99.49
d1ur6b_	52	Not-4 N-terminal RING finger domain {Human (Homo s	99.44
d1chca_	68	Immediate early protein, IEEHV {Equine herpesvirus	99.42
d3dplr1	88	RIGG-box protein 1 (RBX1) of SCF ubiquitin ligase	99.37
d1g25a_	65	TFIIH Mat1 subunit {Human (Homo sapiens) [TaxId: 9	99.31
d1fbva4	79	CBL {Human (Homo sapiens) [TaxId: 9606]}	99.3
d2baya1	56	Pre-mRNA splicing factor Prp19 {Baker's yeast (Sac	99.2
d1bora_	56	Acute promyelocytic leukaemia proto-oncoprotein PM	99.15
d1rmda2	86	V(D)J recombination activating protein 1 (RAG1), d	99.09
d1jm7a_	103	brca1 RING domain {Human (Homo sapiens) [TaxId: 96	99.03
d1vyxa_	60	IE1B protein (ORF K3), N-terminal domain {Kaposi's	99.0
d1jm7b_	97	bard1 RING domain {Human (Homo sapiens) [TaxId: 96	98.88
d2c2la2	80	STIP1 homology and U box-containing protein 1, STU	98.85
d1t1ha_	78	E3 ubiquitin ligase PUB14 {Thale-cress (Arabidopsi	98.81
d1wgma_	98	Ubiquitin conjugation factor E4A {Human (Homo sapi	98.68
d1wima_	94	UbcM4-interacting protein 4 (KIAA0161) {Human (Hom	98.44
d1we9a_	64	PHD finger protein At5g26210 {Thale cress (Arabido	94.39
d1wila_	89	Hypothetical protein KIAA1045 {Human (Homo sapiens	93.22
d1weva_	88	PHD finger protein 22 {Mouse (Mus musculus) [TaxId	91.98
d1wepa_	79	PHD finger protein 8 {Mouse (Mus musculus) [TaxId:	91.35
d1mm2a_	61	Mi2-beta (CHD4) {Human (Homo sapiens) [TaxId: 9606	91.11
d1f62a_	51	Williams-Beuren syndrome transcription factor, WST	90.79
d1fp0a1	70	Nuclear corepressor KAP-1 (TIF-1beta) {Human (Homo	87.54
d1wewa_	78	Sumoylation ligase E3, SIZ1 {Thale cress (Arabidop	87.01
d1wesa_	71	PHD Inhibitor of growth protein 2, Ing2 {Mouse (Mu	85.68
d1weea_	72	PHD finger protein At1g33420 {Thale cress (Arabido	84.65
d1wema_	76	Death associated transcription factor 1, Datf1 (DI	83.81
d1weoa_	93	Cellulose synthase A catalytic subunit 7, IRX3 {Th	83.76
d1z60a1	59	TFIIH p44 subunit cysteine-rich domain {Human (Hom	83.68

>d1iyma_ g.44.1.1 (A:) EL5 RING-H2 domain {Rice (Oryza sativa) [TaxId: 4530]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: EL5 RING-H2 domain
species: Rice (Oryza sativa) [TaxId: 4530]

Probab=99.68  E-value=7.5e-18  Score=117.45  Aligned_cols=52  Identities=73%  Similarity=1.482  Sum_probs=47.6

Q ss_pred             CCCceecccccccccCcceeecCCCCCccchhHHHHHHhcCCCCcccCcccc
Q 021708          105 KDGLECAVCLSELEDGEKARLLPKCNHGFHVECIDMWFQSHSTCPLCRNPVD  156 (309)
Q Consensus       105 ~~~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~Ci~~Wl~~~~~CP~CR~~i~  156 (309)
                      +++.+|+||+++|..++.++.++.|+|.||..||.+||..+.+||+||.+|.
T Consensus         3 ed~~~C~ICl~~~~~~~~~~~l~~C~H~Fh~~Ci~~Wl~~~~~CP~CR~~i~   54 (55)
T d1iyma_           3 DDGVECAVCLAELEDGEEARFLPRCGHGFHAECVDMWLGSHSTCPLCRLTVV   54 (55)
T ss_dssp             CCSCCCTTTCCCCCTTSCCEECSSSCCEECTTHHHHTTTTCCSCSSSCCCSC
T ss_pred             CCCCCCeEECccccCCCEEEEeCCCCCcccHHHHHHHHHhCCcCCCCCCEeE
Confidence            4567899999999999999888779999999999999999999999999875

>d1v87a_ g.44.1.1 (A:) Deltex protein 2 RING-H2 domain {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: Deltex protein 2 RING-H2 domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.49  E-value=1.2e-14  Score=115.17  Aligned_cols=61  Identities=23%  Similarity=0.563  Sum_probs=46.6

Q ss_pred             CCceecccccccccC---------------cceeecCCCCCccchhHHHHHHhc-----CCCCcccCcccccCCCCCCCC
Q 021708          106 DGLECAVCLSELEDG---------------EKARLLPKCNHGFHVECIDMWFQS-----HSTCPLCRNPVDVERSNNGNG  165 (309)
Q Consensus       106 ~~~~C~ICl~~~~~~---------------~~~~~lp~C~H~FH~~Ci~~Wl~~-----~~~CP~CR~~i~~~~~~~~~~  165 (309)
                      .+.+|+||+++|...               ..+.+++ |+|+||..||..||..     +.+||+||..+..+.+++.++
T Consensus        24 ~~~~C~IC~e~l~~~~~~~~~~~~~~~~~~~~~~~~~-CgH~FH~~Ci~~Wl~~~~~~~~~~CP~CR~~~~~~~~~qP~~  102 (114)
T d1v87a_          24 PEEDCIICMEKLAVASGYSDMTDSKALGPMVVGRLTK-CSHAFHLLCLLAMYCNGNKDGSLQCPSCKTIYGEKTGTQPWG  102 (114)
T ss_dssp             CSCEETTTTEETTSCCSTTTTCCCSSSCSSCCEEESS-SCCEECHHHHHHHHHHTCCSSCCBCTTTCCBSSSCSSSCTTS
T ss_pred             ccccccchhheecccccccccccccccccccceEECC-CCChhhHHHHHHHHHhcCcCCCCccccccchhccCcCCCCCC
Confidence            356799999998542               2345666 9999999999999964     347999999998776665554


Q ss_pred             CC
Q 021708          166 EP  167 (309)
Q Consensus       166 ~~  167 (309)
                      ..
T Consensus       103 ~~  104 (114)
T d1v87a_         103 KM  104 (114)
T ss_dssp             SC
T ss_pred             ce
Confidence            43

>d1ur6b_ g.44.1.1 (B:) Not-4 N-terminal RING finger domain {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: Not-4 N-terminal RING finger domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.44  E-value=2.1e-14  Score=98.43  Aligned_cols=49  Identities=24%  Similarity=0.516  Sum_probs=40.9

Q ss_pred             ceecccccccccCcce-eecCCCCCccchhHHHHHHhc-CCCCcccCccccc
Q 021708          108 LECAVCLSELEDGEKA-RLLPKCNHGFHVECIDMWFQS-HSTCPLCRNPVDV  157 (309)
Q Consensus       108 ~~C~ICl~~~~~~~~~-~~lp~C~H~FH~~Ci~~Wl~~-~~~CP~CR~~i~~  157 (309)
                      .+|+||+++|..++.. +.++ |||.||..||+.|+.. +..||+||.++..
T Consensus         1 leCpICl~~~~~~~~~~~~~~-CgH~~c~~C~~~w~~~~~~~CP~CR~~~~~   51 (52)
T d1ur6b_           1 VECPLCMEPLEIDDINFFPCT-CGYQICRFCWHRIRTDENGLCPACRKPYPE   51 (52)
T ss_dssp             CEETTTTEECCGGGTTCCSSS-SSCCCCHHHHHHHTTTSCCBCTTTCCBCSC
T ss_pred             CCCcCCChhhhCCCceEEecC-CCCccchHHHHHHHhhcCCCCCccCCcCCC
Confidence            4799999999876654 4455 9999999999999976 4569999998864

>d1chca_ g.44.1.1 (A:) Immediate early protein, IEEHV {Equine herpesvirus 1 [TaxId: 10326]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: Immediate early protein, IEEHV
species: Equine herpesvirus 1 [TaxId: 10326]

Probab=99.42  E-value=3.3e-14  Score=102.70  Aligned_cols=49  Identities=37%  Similarity=0.929  Sum_probs=42.2

Q ss_pred             CCceecccccccccCcceeecCCCCCccchhHHHHHHhcCCCCcccCccccc
Q 021708          106 DGLECAVCLSELEDGEKARLLPKCNHGFHVECIDMWFQSHSTCPLCRNPVDV  157 (309)
Q Consensus       106 ~~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~Ci~~Wl~~~~~CP~CR~~i~~  157 (309)
                      ..++|+||++.|.+  .++.++ |||.||..||..|+..+.+||+||.++..
T Consensus         4 ~~d~C~IC~~~~~~--~~~~~~-C~H~Fc~~Ci~~w~~~~~~CP~CR~~i~~   52 (68)
T d1chca_           4 VAERCPICLEDPSN--YSMALP-CLHAFCYVCITRWIRQNPTCPLCKVPVES   52 (68)
T ss_dssp             CCCCCSSCCSCCCS--CEEETT-TTEEESTTHHHHHHHHSCSTTTTCCCCCC
T ss_pred             CCCCCccCCcCccC--CcEEeC-CCCcCcHHHHHHHHHhCCcCCCCCcchHh
Confidence            35679999999864  456677 99999999999999999999999998753

>d3dplr1 g.44.1.1 (R:19-106) RIGG-box protein 1 (RBX1) of SCF ubiquitin ligase complex {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: RIGG-box protein 1 (RBX1) of SCF ubiquitin ligase complex
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.37  E-value=9.7e-14  Score=105.18  Aligned_cols=50  Identities=30%  Similarity=0.679  Sum_probs=41.3

Q ss_pred             CceecccccccccCc---------------ceeecCCCCCccchhHHHHHHhcCCCCcccCccccc
Q 021708          107 GLECAVCLSELEDGE---------------KARLLPKCNHGFHVECIDMWFQSHSTCPLCRNPVDV  157 (309)
Q Consensus       107 ~~~C~ICl~~~~~~~---------------~~~~lp~C~H~FH~~Ci~~Wl~~~~~CP~CR~~i~~  157 (309)
                      +++|+||++++....               .+..++ |+|.||.+||..||..+.+||+||+.+..
T Consensus        21 ~d~C~IC~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-C~H~FH~~Ci~~Wl~~~~~CP~CR~~~~~   85 (88)
T d3dplr1          21 VDNCAICRNHIMDLCIECQANQASATSEECTVAWGV-CNHAFHFHCISRWLKTRQVCPLDNREWEF   85 (88)
T ss_dssp             SCCCSSSCSCTTSCCTTHHHHTTCC---CCCEEEET-TSCEEEHHHHHHHHTTCSBCSSSCSBCCE
T ss_pred             CCcCEEccchhhCccccccccccccccccCCeEEcc-ccCcccHHHHHHHHHHCCcCCCCCCcccc
Confidence            456999999886532               245566 99999999999999999999999998764

>d1g25a_ g.44.1.1 (A:) TFIIH Mat1 subunit {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: TFIIH Mat1 subunit
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.31  E-value=6.1e-13  Score=95.11  Aligned_cols=51  Identities=25%  Similarity=0.604  Sum_probs=39.9

Q ss_pred             CCceecccccccccCc--ceeecCCCCCccchhHHHHHHhc-CCCCcccCccccc
Q 021708          106 DGLECAVCLSELEDGE--KARLLPKCNHGFHVECIDMWFQS-HSTCPLCRNPVDV  157 (309)
Q Consensus       106 ~~~~C~ICl~~~~~~~--~~~~lp~C~H~FH~~Ci~~Wl~~-~~~CP~CR~~i~~  157 (309)
                      ++..|+||++++..+.  .+.+++ |||.||..||..|+.. +..||+||..+..
T Consensus         2 dd~~CpIC~~~~~~~~~~~~~~~~-C~H~fc~~Ci~~~~~~~~~~CP~CR~~i~~   55 (65)
T d1g25a_           2 DDQGCPRCKTTKYRNPSLKLMVNV-CGHTLCESCVDLLFVRGAGNCPECGTPLRK   55 (65)
T ss_dssp             CTTCCSTTTTHHHHCSSCCEEECT-TCCCEEHHHHHHHHHTTSSSCTTTCCCCSS
T ss_pred             CCCCCCcCCceeecCCceEEEeCc-cChHhhHHHHHHHhCcCcCCCCCCCcCccc
Confidence            4568999999865432  345555 9999999999999955 5679999998753

>d1fbva4 g.44.1.1 (A:356-434) CBL {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: CBL
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.30  E-value=9.9e-13  Score=97.60  Aligned_cols=47  Identities=28%  Similarity=0.772  Sum_probs=40.4

Q ss_pred             ceecccccccccCcceeecCCCCCccchhHHHHHHhc-CCCCcccCcccccC
Q 021708          108 LECAVCLSELEDGEKARLLPKCNHGFHVECIDMWFQS-HSTCPLCRNPVDVE  158 (309)
Q Consensus       108 ~~C~ICl~~~~~~~~~~~lp~C~H~FH~~Ci~~Wl~~-~~~CP~CR~~i~~~  158 (309)
                      ..|+||++.+.+   +++++ |||.||..||..||.. +.+||+||..|...
T Consensus        24 ~~C~IC~~~~~~---~~~~~-CgH~fC~~Ci~~wl~~~~~~CP~Cr~~i~~~   71 (79)
T d1fbva4          24 QLCKICAENDKD---VKIEP-CGHLMCTSCLTSWQESEGQGCPFCRCEIKGT   71 (79)
T ss_dssp             TBCTTTSSSBCC---EECSS-SCCEECHHHHHHHHHTTCCSCTTTCCCCCCC
T ss_pred             CCCccCCCcCCC---eEEeC-CCCeeeHHHHHHHHHHCcCcCCCCCcCccCC
Confidence            469999999765   67888 9999999999999974 56799999999743

>d2baya1 g.44.1.2 (A:1-56) Pre-mRNA splicing factor Prp19 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: U-box
domain: Pre-mRNA splicing factor Prp19
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.20  E-value=1.8e-12  Score=89.88  Aligned_cols=47  Identities=19%  Similarity=0.375  Sum_probs=40.9

Q ss_pred             eecccccccccCcceeecCCCCCccchhHHHHHHhcCCCCcccCcccccC
Q 021708          109 ECAVCLSELEDGEKARLLPKCNHGFHVECIDMWFQSHSTCPLCRNPVDVE  158 (309)
Q Consensus       109 ~C~ICl~~~~~~~~~~~lp~C~H~FH~~Ci~~Wl~~~~~CP~CR~~i~~~  158 (309)
                      .|+||++.|.+   ...+++|||.||++||.+||..+.+||+||.++...
T Consensus         2 ~C~Ic~~~~~~---Pv~~~~cGh~fc~~cI~~~l~~~~~CP~c~~~l~~~   48 (56)
T d2baya1           2 LCAISGKVPRR---PVLSPKSRTIFEKSLLEQYVKDTGNDPITNEPLSIE   48 (56)
T ss_dssp             CCTTTCSCCSS---EEEETTTTEEEEHHHHHHHHHHHSBCTTTCCBCCGG
T ss_pred             CCccCCchHHh---cCccCCCCCcccHHHHHHHHhhccCCCccCCcCCHH
Confidence            59999999875   445556999999999999999999999999988754

>d1bora_ g.44.1.1 (A:) Acute promyelocytic leukaemia proto-oncoprotein PML {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: Acute promyelocytic leukaemia proto-oncoprotein PML
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.15  E-value=4.1e-12  Score=88.16  Aligned_cols=47  Identities=30%  Similarity=0.721  Sum_probs=39.1

Q ss_pred             CCceecccccccccCcceeecCCCCCccchhHHHHHHhcCCCCcccCcccccCC
Q 021708          106 DGLECAVCLSELEDGEKARLLPKCNHGFHVECIDMWFQSHSTCPLCRNPVDVER  159 (309)
Q Consensus       106 ~~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~Ci~~Wl~~~~~CP~CR~~i~~~~  159 (309)
                      +.++|+||++.|.+   .+++| |||.||..||+.|   +.+||+||..+....
T Consensus         5 ~~l~C~IC~~~~~~---p~~lp-CgH~fC~~Ci~~~---~~~CP~Cr~~~~~~~   51 (56)
T d1bora_           5 QFLRCQQCQAEAKC---PKLLP-CLHTLCSGCLEAS---GMQCPICQAPWPLGA   51 (56)
T ss_dssp             CCSSCSSSCSSCBC---CSCST-TSCCSBTTTCSSS---SSSCSSCCSSSSCCS
T ss_pred             CCCCCcccCcccCC---CEEec-CCCHHhHHHHHcC---CCcCcCCCCcccCCC
Confidence            34689999999875   56787 9999999999876   568999999987543

>d1rmda2 g.44.1.1 (A:1-86) V(D)J recombination activating protein 1 (RAG1), dimerization domain {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: V(D)J recombination activating protein 1 (RAG1), dimerization domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.09  E-value=2.9e-11  Score=90.95  Aligned_cols=48  Identities=31%  Similarity=0.591  Sum_probs=40.6

Q ss_pred             CceecccccccccCcceeecCCCCCccchhHHHHHHhc-CCCCcccCcccccC
Q 021708          107 GLECAVCLSELEDGEKARLLPKCNHGFHVECIDMWFQS-HSTCPLCRNPVDVE  158 (309)
Q Consensus       107 ~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~Ci~~Wl~~-~~~CP~CR~~i~~~  158 (309)
                      ...|+||++.|.+   ...++ |||.||+.||..|++. +..||+||.++...
T Consensus        23 ~l~C~IC~~~~~~---pv~~~-CgH~FC~~Ci~~~~~~~~~~CP~Cr~p~~~~   71 (86)
T d1rmda2          23 SISCQICEHILAD---PVETS-CKHLFCRICILRCLKVMGSYCPSCRYPCFPT   71 (86)
T ss_dssp             HTBCTTTCSBCSS---EEECT-TSCEEEHHHHHHHHHHTCSBCTTTCCBCCGG
T ss_pred             CcCCccCCcchhc---ceecC-CCChhhHHHHHHHHhhCCCcCcccCCCCChh
Confidence            3579999999875   66787 9999999999999965 46799999988654

>d1jm7a_ g.44.1.1 (A:) brca1 RING domain {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: brca1 RING domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.03  E-value=5.5e-11  Score=92.06  Aligned_cols=48  Identities=31%  Similarity=0.715  Sum_probs=39.5

Q ss_pred             CceecccccccccCcceeecCCCCCccchhHHHHHHhcC---CCCcccCcccccC
Q 021708          107 GLECAVCLSELEDGEKARLLPKCNHGFHVECIDMWFQSH---STCPLCRNPVDVE  158 (309)
Q Consensus       107 ~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~Ci~~Wl~~~---~~CP~CR~~i~~~  158 (309)
                      .+.|+||++.|.+   .+.++ |||.||..||..|+...   ..||+||..+...
T Consensus        21 ~l~CpIC~~~~~~---pv~~~-CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~~   71 (103)
T d1jm7a_          21 ILECPICLELIKE---PVSTK-CDHIFCKFCMLKLLNQKKGPSQCPLCKNDITKR   71 (103)
T ss_dssp             HTSCSSSCCCCSS---CCBCT-TSCCCCSHHHHHHHHSSSSSCCCTTTSCCCCTT
T ss_pred             CcCCCccCchhCC---eEEcC-CCCchhhHHHHHHHHHCCCCCcCcCCCCcCChh
Confidence            4579999999875   44576 99999999999999664   3799999988643

>d1vyxa_ g.44.1.3 (A:) IE1B protein (ORF K3), N-terminal domain {Kaposi's sarcoma-associated herpesvirus, KSHV, HHV8 [TaxId: 37296]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: Variant RING domain
domain: IE1B protein (ORF K3), N-terminal domain
species: Kaposi's sarcoma-associated herpesvirus, KSHV, HHV8 [TaxId: 37296]

Probab=99.00  E-value=1.3e-10  Score=81.29  Aligned_cols=52  Identities=19%  Similarity=0.447  Sum_probs=37.6

Q ss_pred             CCCceecccccccccCccee-ecCCCCCccchhHHHHHHh--cCCCCcccCcccc
Q 021708          105 KDGLECAVCLSELEDGEKAR-LLPKCNHGFHVECIDMWFQ--SHSTCPLCRNPVD  156 (309)
Q Consensus       105 ~~~~~C~ICl~~~~~~~~~~-~lp~C~H~FH~~Ci~~Wl~--~~~~CP~CR~~i~  156 (309)
                      ++...|.||++++....... ....|+|.||..||..|+.  .+.+||+||+.+.
T Consensus         4 ed~~~C~IC~~~~~~~~~~~c~c~~c~h~~H~~Cl~~W~~~~~~~~CP~Cr~~~~   58 (60)
T d1vyxa_           4 EDVPVCWICNEELGNERFRACGCTGELENVHRSCLSTWLTISRNTACQICGVVYN   58 (60)
T ss_dssp             CSCCEETTTTEECSCCCCCSCCCSSGGGSCCHHHHHHHHHHHTCSBCTTTCCBCC
T ss_pred             CCCCCCccCCccCCCceeEecccCCCCCEEcHHHHHHHHhhCCCCCCcccCCeee
Confidence            45578999999986432211 1112459999999999994  4568999998875

>d1jm7b_ g.44.1.1 (B:) bard1 RING domain {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: bard1 RING domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.88  E-value=2.2e-10  Score=87.62  Aligned_cols=47  Identities=28%  Similarity=0.629  Sum_probs=37.7

Q ss_pred             CCceecccccccccCcceeecCCCCCccchhHHHHHHhcCCCCcccCccccc
Q 021708          106 DGLECAVCLSELEDGEKARLLPKCNHGFHVECIDMWFQSHSTCPLCRNPVDV  157 (309)
Q Consensus       106 ~~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~Ci~~Wl~~~~~CP~CR~~i~~  157 (309)
                      +...|+||++.|.+.  +...+ |||.||..||..|+.  ..||.||..+..
T Consensus        21 ~~l~C~IC~~~~~~p--v~~~~-CgH~fC~~Ci~~~~~--~~CP~Cr~~~~~   67 (97)
T d1jm7b_          21 KLLRCSRCTNILREP--VCLGG-CEHIFCSNCVSDCIG--TGCPVCYTPAWI   67 (97)
T ss_dssp             HTTSCSSSCSCCSSC--BCCCS-SSCCBCTTTGGGGTT--TBCSSSCCBCSC
T ss_pred             hcCCCccCCchhhcC--ceeCC-CCCchhHHHHHHHHh--ccccccCCcCch
Confidence            346799999999753  33345 999999999999985  459999988764

>d2c2la2 g.44.1.2 (A:225-304) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: U-box
domain: STIP1 homology and U box-containing protein 1, STUB1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.85  E-value=8.9e-10  Score=81.23  Aligned_cols=51  Identities=18%  Similarity=0.282  Sum_probs=42.4

Q ss_pred             CCCCceecccccccccCcceeecCCCCCccchhHHHHHHhc-CCCCcccCcccccC
Q 021708          104 FKDGLECAVCLSELEDGEKARLLPKCNHGFHVECIDMWFQS-HSTCPLCRNPVDVE  158 (309)
Q Consensus       104 ~~~~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~Ci~~Wl~~-~~~CP~CR~~i~~~  158 (309)
                      ..+++.|+||++.|.+   ...++ |||.|+..||..|+.. +.+||.||..+...
T Consensus         4 iP~~l~CpIc~~l~~d---Pv~~~-cGhtfc~~ci~~~l~~~~~~cP~c~~~l~~~   55 (80)
T d2c2la2           4 IPDYLCGKISFELMRE---PCITP-SGITYDRKDIEEHLQRVGHFNPVTRSPLTQE   55 (80)
T ss_dssp             CCSTTBCTTTCSBCSS---EEECS-SCCEEETTHHHHHHHHTCSSCTTTCCCCCGG
T ss_pred             CCccccCcCcCchhhh---hcccC-CcCeecHHHHHHHHhcCCccCCCcccccccc
Confidence            3467889999999986   45677 9999999999999964 56799999987643

>d1t1ha_ g.44.1.2 (A:) E3 ubiquitin ligase PUB14 {Thale-cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: U-box
domain: E3 ubiquitin ligase PUB14
species: Thale-cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=98.81  E-value=1.3e-09  Score=79.79  Aligned_cols=51  Identities=20%  Similarity=0.559  Sum_probs=42.7

Q ss_pred             CCCCceecccccccccCcceeecCCCCCccchhHHHHHHhc-CCCCcccCcccccC
Q 021708          104 FKDGLECAVCLSELEDGEKARLLPKCNHGFHVECIDMWFQS-HSTCPLCRNPVDVE  158 (309)
Q Consensus       104 ~~~~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~Ci~~Wl~~-~~~CP~CR~~i~~~  158 (309)
                      ..+++.|+||++.|.+   .+.++ |||.|+..||..|+.. +..||.|+..+...
T Consensus         5 iP~~l~CpIc~~~m~d---PV~~~-cgh~fc~~ci~~~~~~~~~~cP~~~~~l~~~   56 (78)
T d1t1ha_           5 FPEYFRCPISLELMKD---PVIVS-TGQTYERSSIQKWLDAGHKTCPKSQETLLHA   56 (78)
T ss_dssp             CSSSSSCTTTSCCCSS---EEEET-TTEEEEHHHHHHHHTTTCCBCTTTCCBCSSC
T ss_pred             CCccCCCcCcCchhhC---ceEcc-CCCcchHHHHHHHHHHCCCCCCcccccCCcc
Confidence            4467889999999986   45677 9999999999999976 46799999987643

>d1wgma_ g.44.1.2 (A:) Ubiquitin conjugation factor E4A {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: U-box
domain: Ubiquitin conjugation factor E4A
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.68  E-value=7.4e-09  Score=79.27  Aligned_cols=51  Identities=20%  Similarity=0.255  Sum_probs=43.1

Q ss_pred             CCCceecccccccccCcceeecCCCCCccchhHHHHHHhcCCCCcccCcccccC
Q 021708          105 KDGLECAVCLSELEDGEKARLLPKCNHGFHVECIDMWFQSHSTCPLCRNPVDVE  158 (309)
Q Consensus       105 ~~~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~Ci~~Wl~~~~~CP~CR~~i~~~  158 (309)
                      -+++.|+||++.|.+   .++++.|+|.|++.||..||..+.+||+||.++...
T Consensus        20 P~~f~CPI~~~lm~d---PV~~~~~~~ty~r~~I~~~l~~~~~~P~~~~~l~~~   70 (98)
T d1wgma_          20 CDEFLDPIMSTLMCD---PVVLPSSRVTVDRSTIARHLLSDQTDPFNRSPLTMD   70 (98)
T ss_dssp             CTTTBCTTTCSBCSS---EEECTTTCCEEEHHHHHHHTTTSCBCTTTCSBCCTT
T ss_pred             cHHhCCcCchhHHHH---HHhcccccchhhHHHHHHHHHhcCCcccccccccch
Confidence            356889999999987   667774556899999999999999999999988653

>d1wima_ g.44.1.1 (A:) UbcM4-interacting protein 4 (KIAA0161) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: UbcM4-interacting protein 4 (KIAA0161)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.44  E-value=2.8e-08  Score=74.88  Aligned_cols=46  Identities=20%  Similarity=0.485  Sum_probs=37.1

Q ss_pred             CceecccccccccCcceeecCCCCCccchhHHHHHHhc--------CCCCcccCc
Q 021708          107 GLECAVCLSELEDGEKARLLPKCNHGFHVECIDMWFQS--------HSTCPLCRN  153 (309)
Q Consensus       107 ~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~Ci~~Wl~~--------~~~CP~CR~  153 (309)
                      ..+|+||++++...+.+.+++ |+|.||.+|+..|+..        .-.||.|+.
T Consensus         5 ~~~C~IC~~~~~~~~~~~~~~-C~H~fC~~Cl~~~~~~~i~~~~~~~i~CP~~~C   58 (94)
T d1wima_           5 SSGCKLCLGEYPVEQMTTIAQ-CQCIFCTLCLKQYVELLIKEGLETAISCPDAAC   58 (94)
T ss_dssp             BCCCSSSCCCCBGGGEEEETT-TTEEEEHHHHHHHHHHHHHHCSCCCEECSCTTC
T ss_pred             CCcCccCCCcccCCceEEECC-CCCEeCCcCHHHHHHHHHhcCCccccCCcCCCC
Confidence            457999999998777777776 9999999999999953        125998654

>d1we9a_ g.50.1.2 (A:) PHD finger protein At5g26210 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Small proteins
fold: FYVE/PHD zinc finger
superfamily: FYVE/PHD zinc finger
family: PHD domain
domain: PHD finger protein At5g26210
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=94.39  E-value=0.0046  Score=42.16  Aligned_cols=49  Identities=22%  Similarity=0.433  Sum_probs=37.0

Q ss_pred             CCceecccccccccCcceeecCCCCCccchhHHHHHH-----hcCCCCcccCcc
Q 021708          106 DGLECAVCLSELEDGEKARLLPKCNHGFHVECIDMWF-----QSHSTCPLCRNP  154 (309)
Q Consensus       106 ~~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~Ci~~Wl-----~~~~~CP~CR~~  154 (309)
                      ....|.||......++.++..-.|+..||..|+..-.     ..+..||.|+..
T Consensus         5 ~~~~C~~C~~~~~~~~~~I~Cd~C~~w~H~~C~~~~~~~~~~~~~w~C~~C~~~   58 (64)
T d1we9a_           5 SSGQCGACGESYAADEFWICCDLCEMWFHGKCVKITPARAEHIKQYKCPSCSNK   58 (64)
T ss_dssp             SCCCCSSSCCCCCSSSCEEECSSSCCEEETTTTTCCTTGGGGCSSCCCHHHHTT
T ss_pred             CCCcCcCcCCCCCCCCCEEEcCCCCccCCcccCCcChHHCCCCCeEECcCCcCc
Confidence            3457999999887776666777799999999996422     135679999753

>d1wila_ g.50.1.3 (A:) Hypothetical protein KIAA1045 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: FYVE/PHD zinc finger
superfamily: FYVE/PHD zinc finger
family: variant PHD-like domain
domain: Hypothetical protein KIAA1045
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.22  E-value=0.041  Score=39.31  Aligned_cols=37  Identities=22%  Similarity=0.373  Sum_probs=26.3

Q ss_pred             CCCCCceecccccccccCcceeecCCCCCccchhHHHHH
Q 021708          103 DFKDGLECAVCLSELEDGEKARLLPKCNHGFHVECIDMW  141 (309)
Q Consensus       103 ~~~~~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~Ci~~W  141 (309)
                      ....+.-|.|| +.+.. +.+.-..-|+-+||..|+.+-
T Consensus        11 ~v~~D~mC~vC-~v~t~-~~l~pCRvCtRv~H~~CL~r~   47 (89)
T d1wila_          11 PVVNDEMCDVC-EVWTA-ESLFPCRVCTRVFHDGCLRRM   47 (89)
T ss_dssp             CCCCSCCCTTT-CCCCS-SCCSSCSSSSSCCCHHHHHHH
T ss_pred             CCCcCcccccc-Ccccc-cceecceeecchhhHHHHHHh
Confidence            44567789999 55554 333344448999999999997

>d1weva_ g.50.1.2 (A:) PHD finger protein 22 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: FYVE/PHD zinc finger
superfamily: FYVE/PHD zinc finger
family: PHD domain
domain: PHD finger protein 22
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=91.98  E-value=0.012  Score=42.44  Aligned_cols=50  Identities=22%  Similarity=0.484  Sum_probs=34.9

Q ss_pred             Cceeccccccccc-CcceeecCCCCCccchhHHHHHHh--------cCCCCcccCcccc
Q 021708          107 GLECAVCLSELED-GEKARLLPKCNHGFHVECIDMWFQ--------SHSTCPLCRNPVD  156 (309)
Q Consensus       107 ~~~C~ICl~~~~~-~~~~~~lp~C~H~FH~~Ci~~Wl~--------~~~~CP~CR~~i~  156 (309)
                      ...|.||...... ...++..-.|...||..|+...+.        ....||.|.....
T Consensus        16 ~~~C~iC~~~~~~~~~~~v~Cd~C~~~~H~~C~~p~~~~~~~~~~~~~W~C~~C~~~~~   74 (88)
T d1weva_          16 GLACVVCRQMTVASGNQLVECQECHNLYHQDCHKPQVTDKEVNDPRLVWYCARCTRQMK   74 (88)
T ss_dssp             CCSCSSSCCCCCCTTCCEEECSSSCCEEETTTSSSCCCHHHHHCTTCCCCCHHHHHHHC
T ss_pred             cCCccCCCCccCCCCCeEEEcCCCCCccccccCCCcccccccccCCCeEECcccCchHh
Confidence            4569999875443 345666767999999999875431        1457999976543

>d1wepa_ g.50.1.2 (A:) PHD finger protein 8 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: FYVE/PHD zinc finger
superfamily: FYVE/PHD zinc finger
family: PHD domain
domain: PHD finger protein 8
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=91.35  E-value=0.17  Score=35.44  Aligned_cols=47  Identities=17%  Similarity=0.299  Sum_probs=33.5

Q ss_pred             eecccccccccCcceeecCCCCCccchhHHHH--H-Hh--cCCCCcccCccc
Q 021708          109 ECAVCLSELEDGEKARLLPKCNHGFHVECIDM--W-FQ--SHSTCPLCRNPV  155 (309)
Q Consensus       109 ~C~ICl~~~~~~~~~~~lp~C~H~FH~~Ci~~--W-l~--~~~~CP~CR~~i  155 (309)
                      .|.||...+..++..+..-.|.--||..|+..  . +.  .+..||.|+...
T Consensus        13 v~CiC~~~~~~~~~mI~Cd~C~~W~H~~C~g~~~~~~~~~~~~~C~~C~~~~   64 (79)
T d1wepa_          13 VYCLCRQPYNVNHFMIECGLCQDWFHGSCVGIEEENAVDIDIYHCPDCEAVF   64 (79)
T ss_dssp             CCSTTSCSCCSSSCEEEBTTTCCEEEHHHHTCCHHHHTTCSBBCCTTTTTTS
T ss_pred             eEeECCCccCCCCcEEECCCCCCcEeccccCcchhcCCCCCEEECccCcCCc
Confidence            34499987766666667777999999999952  2 11  247899998644

>d1mm2a_ g.50.1.2 (A:) Mi2-beta (CHD4) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: FYVE/PHD zinc finger
superfamily: FYVE/PHD zinc finger
family: PHD domain
domain: Mi2-beta (CHD4)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.11  E-value=0.027  Score=37.80  Aligned_cols=46  Identities=22%  Similarity=0.532  Sum_probs=32.8

Q ss_pred             CCceecccccccccCcceeecCCCCCccchhHHHHHHhc----CCCCcccCccc
Q 021708          106 DGLECAVCLSELEDGEKARLLPKCNHGFHVECIDMWFQS----HSTCPLCRNPV  155 (309)
Q Consensus       106 ~~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~Ci~~Wl~~----~~~CP~CR~~i  155 (309)
                      +...|.+|.+.    ..++..-.|.-.||..|+...+..    ...||.|+...
T Consensus         8 ~~~~C~~C~~~----g~lv~Cd~C~~~~H~~C~~~~~~~~~~~~W~C~~C~~~~   57 (61)
T d1mm2a_           8 HMEFCRVCKDG----GELLCCDTCPSSYHIHCLNPPLPEIPNGEWLCPRCTCPA   57 (61)
T ss_dssp             SCSSCTTTCCC----SSCBCCSSSCCCBCSSSSSSCCSSCCSSCCCCTTTTTTC
T ss_pred             CcCCCcCCCCC----CeEEEeCCCCccCchhhcCCCcCcCCCCcEECCCCcCcc
Confidence            34569999853    335555568899999999876643    45699997543

>d1f62a_ g.50.1.2 (A:) Williams-Beuren syndrome transcription factor, WSTF {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: FYVE/PHD zinc finger
superfamily: FYVE/PHD zinc finger
family: PHD domain
domain: Williams-Beuren syndrome transcription factor, WSTF
species: Human (Homo sapiens) [TaxId: 9606]

Probab=90.79  E-value=0.051  Score=34.91  Aligned_cols=44  Identities=32%  Similarity=0.705  Sum_probs=32.5

Q ss_pred             eecccccccccCcceeecCCCCCccchhHHHHHHhc----CCCCcccCc
Q 021708          109 ECAVCLSELEDGEKARLLPKCNHGFHVECIDMWFQS----HSTCPLCRN  153 (309)
Q Consensus       109 ~C~ICl~~~~~~~~~~~lp~C~H~FH~~Ci~~Wl~~----~~~CP~CR~  153 (309)
                      .|.||...-. ++.++..-.|...||..|++.-+..    ...||.|+.
T Consensus         2 ~C~vC~~~~~-~~~~i~Cd~C~~~~H~~C~~p~~~~~p~~~W~C~~C~~   49 (51)
T d1f62a_           2 RCKVCRKKGE-DDKLILCDECNKAFHLFCLRPALYEVPDGEWQCPACQP   49 (51)
T ss_dssp             CCTTTCCSSC-CSCCEECTTTCCEECHHHHCTTCCSCCSSCCSCTTTSC
T ss_pred             CCcCcCCCCC-CCCEEEcCCCCCCCCCCCCCCCCCcCCCCCEECcCCcC
Confidence            4889976643 3445566679999999999987743    446999974

>d1fp0a1 g.50.1.2 (A:19-88) Nuclear corepressor KAP-1 (TIF-1beta) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: FYVE/PHD zinc finger
superfamily: FYVE/PHD zinc finger
family: PHD domain
domain: Nuclear corepressor KAP-1 (TIF-1beta)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=87.54  E-value=0.18  Score=34.51  Aligned_cols=43  Identities=28%  Similarity=0.620  Sum_probs=30.7

Q ss_pred             ceecccccccccCcceeecCCCCCccchhHHHHHHhc----CCCCcccCcc
Q 021708          108 LECAVCLSELEDGEKARLLPKCNHGFHVECIDMWFQS----HSTCPLCRNP  154 (309)
Q Consensus       108 ~~C~ICl~~~~~~~~~~~lp~C~H~FH~~Ci~~Wl~~----~~~CP~CR~~  154 (309)
                      ..|.+|.+.   + .+...-.|...||..|+...+..    ...||.|+..
T Consensus         8 ~~C~~C~~~---~-~ll~Cd~C~~~~H~~C~~p~l~~~p~~~W~C~~C~~~   54 (70)
T d1fp0a1           8 TICRVCQKP---G-DLVMCNQCEFCFHLDCHLPALQDVPGEEWSCSLCHVL   54 (70)
T ss_dssp             SCCSSSCSS---S-CCEECTTSSCEECTTSSSTTCCCCCSSSCCCCSCCCC
T ss_pred             CCCCCCCCc---C-EEEECCCCChhhccccCCCCcCcCCCCCEECcCCcCc
Confidence            457777643   3 35566679999999999988743    4459999643

>d1wewa_ g.50.1.2 (A:) Sumoylation ligase E3, SIZ1 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Small proteins
fold: FYVE/PHD zinc finger
superfamily: FYVE/PHD zinc finger
family: PHD domain
domain: Sumoylation ligase E3, SIZ1
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=87.01  E-value=0.09  Score=36.86  Aligned_cols=49  Identities=27%  Similarity=0.541  Sum_probs=31.5

Q ss_pred             CceecccccccccCcceeec-CCCCCccchhHHHH----HH-----hcCCCCcccCcccc
Q 021708          107 GLECAVCLSELEDGEKARLL-PKCNHGFHVECIDM----WF-----QSHSTCPLCRNPVD  156 (309)
Q Consensus       107 ~~~C~ICl~~~~~~~~~~~l-p~C~H~FH~~Ci~~----Wl-----~~~~~CP~CR~~i~  156 (309)
                      ...| ||......+..+..- .+|..-||..|+.-    +.     .....||.|+..-.
T Consensus        16 ~~~C-~C~~~~~~~~~i~c~c~~C~~W~H~~Cvgi~~~~~~~~~~~~~~~~C~~C~~~~~   74 (78)
T d1wewa_          16 KVRC-VCGNSLETDSMIQCEDPRCHVWQHVGCVILPDKPMDGNPPLPESFYCEICRLTSG   74 (78)
T ss_dssp             CCCC-SSCCCCCCSCEEECSSTTTCCEEEHHHHSCCCTTTCSCSCSCSSCCCHHHHHCCS
T ss_pred             ccEe-ECCCccCCCcEEEEeCCCCCcCCCccccCccccccccccCCCCEEECCCCcCcCC
Confidence            3568 999887655444322 24889999999842    11     12478999975543

>d1wesa_ g.50.1.2 (A:) PHD Inhibitor of growth protein 2, Ing2 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: FYVE/PHD zinc finger
superfamily: FYVE/PHD zinc finger
family: PHD domain
domain: PHD Inhibitor of growth protein 2, Ing2
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=85.68  E-value=0.17  Score=34.90  Aligned_cols=45  Identities=27%  Similarity=0.621  Sum_probs=25.5

Q ss_pred             ceecccccccccCcceeec-CCCC-CccchhHHHHHH--hcCCCCcccCcc
Q 021708          108 LECAVCLSELEDGEKARLL-PKCN-HGFHVECIDMWF--QSHSTCPLCRNP  154 (309)
Q Consensus       108 ~~C~ICl~~~~~~~~~~~l-p~C~-H~FH~~Ci~~Wl--~~~~~CP~CR~~  154 (309)
                      ..| ||..... ++.+... ..|. .-||..|+..--  .....||.|+..
T Consensus        17 ~~C-iC~~~~~-~~~i~c~~~~C~~~wfH~~Cvgl~~~p~~~w~C~~C~~~   65 (71)
T d1wesa_          17 TYC-LCNQVSY-GEMIGCDNEQCPIEWFHFSCVSLTYKPKGKWYCPKCRGD   65 (71)
T ss_dssp             CCS-TTCCCCC-SSEECCSCTTCSCCCEETTTTTCSSCCSSCCCCTTTSSC
T ss_pred             CEE-EeCCCCC-CCEEEEECCCCCCcCccCccCCCCcCCCCcEECcCCccc
Confidence            446 9997643 3333221 1244 469999985211  125569999753

>d1weea_ g.50.1.2 (A:) PHD finger protein At1g33420 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Small proteins
fold: FYVE/PHD zinc finger
superfamily: FYVE/PHD zinc finger
family: PHD domain
domain: PHD finger protein At1g33420
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=84.65  E-value=0.073  Score=36.65  Aligned_cols=46  Identities=26%  Similarity=0.496  Sum_probs=33.4

Q ss_pred             ceecccccccccCcceeecCCCCCccchhHHHHHH----hcCCCCcccCcc
Q 021708          108 LECAVCLSELEDGEKARLLPKCNHGFHVECIDMWF----QSHSTCPLCRNP  154 (309)
Q Consensus       108 ~~C~ICl~~~~~~~~~~~lp~C~H~FH~~Ci~~Wl----~~~~~CP~CR~~  154 (309)
                      ..| ||......++.++..-.|..-||..|+..-.    .....||.|+..
T Consensus        17 ~~C-~C~~~~~~~~~mv~Cd~C~~w~H~~C~g~~~~~~~~~~~~C~~C~~~   66 (72)
T d1weea_          17 VDC-KCGTKDDDGERMLACDGCGVWHHTRCIGINNADALPSKFLCFRCIEL   66 (72)
T ss_dssp             ECC-TTCCCSCCSSCEEECSSSCEEEETTTTTCCTTSCCCSCCCCHHHHHH
T ss_pred             EEe-eCCCCcCCCCeEEEeCCCCCcCchhhcCCccccCCCCcEECcCCcCc
Confidence            457 7887766666677777799999999986532    235679999754

>d1wema_ g.50.1.2 (A:) Death associated transcription factor 1, Datf1 (DIO-1) {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: FYVE/PHD zinc finger
superfamily: FYVE/PHD zinc finger
family: PHD domain
domain: Death associated transcription factor 1, Datf1 (DIO-1)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=83.81  E-value=0.45  Score=32.54  Aligned_cols=46  Identities=22%  Similarity=0.480  Sum_probs=31.0

Q ss_pred             ceecccccccccCcceeecCCCCCccchhHHH----H--H---HhcCCCCcccCccc
Q 021708          108 LECAVCLSELEDGEKARLLPKCNHGFHVECID----M--W---FQSHSTCPLCRNPV  155 (309)
Q Consensus       108 ~~C~ICl~~~~~~~~~~~lp~C~H~FH~~Ci~----~--W---l~~~~~CP~CR~~i  155 (309)
                      ..| ||..... ++.++..-+|.--||..|+.    .  .   ......||.|+...
T Consensus        17 ~~C-iC~~~~~-~~~mi~Cd~C~~w~H~~Cvg~~~~~~~~~~~~~~~w~C~~C~~~~   71 (76)
T d1wema_          17 LYC-ICRQPHN-NRFMICCDRCEEWFHGDCVGISEARGRLLERNGEDYICPNCTILS   71 (76)
T ss_dssp             CCS-TTCCCCC-SSCEEECSSSCCEEEHHHHSCCHHHHHHHHHHTCCCCCHHHHHHS
T ss_pred             CEE-ECCCccC-CCeEEEECCCCCcCCccccCCCcccccccCCCCCcEECCCCcCcC
Confidence            457 8987654 34466666798999999983    1  1   12357899996543

>d1weoa_ g.44.1.1 (A:) Cellulose synthase A catalytic subunit 7, IRX3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: Cellulose synthase A catalytic subunit 7, IRX3
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=83.76  E-value=1.9  Score=30.54  Aligned_cols=54  Identities=19%  Similarity=0.414  Sum_probs=38.8

Q ss_pred             Cceeccccccccc---CcceeecCCCCCccchhHHHHHH-hcCCCCcccCcccccCCC
Q 021708          107 GLECAVCLSELED---GEKARLLPKCNHGFHVECIDMWF-QSHSTCPLCRNPVDVERS  160 (309)
Q Consensus       107 ~~~C~ICl~~~~~---~~~~~~lp~C~H~FH~~Ci~~Wl-~~~~~CP~CR~~i~~~~~  160 (309)
                      ...|.||-+++..   ++..+-+-.|+--.|..|++-=. ..++.||-|+..+...++
T Consensus        16 ~q~CqiCGd~VG~~~~Ge~FVAC~eC~FPvCrpCyEYErkeG~q~CpqCkt~Ykr~kg   73 (93)
T d1weoa_          16 GQFCEICGDQIGLTVEGDLFVACNECGFPACRPCYEYERREGTQNCPQCKTRYKRLRG   73 (93)
T ss_dssp             SCBCSSSCCBCCBCSSSSBCCSCSSSCCCCCHHHHHHHHHTSCSSCTTTCCCCCCCTT
T ss_pred             cchhhhcccccccCCCCCEEEEecccCCccchHHHHHHHhccCccCcccCChhhhhcC
Confidence            4579999999753   33333344466778999987655 457789999999876554

>d1z60a1 g.49.1.2 (A:328-386) TFIIH p44 subunit cysteine-rich domain {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Cysteine-rich domain
superfamily: Cysteine-rich domain
family: TFIIH p44 subunit cysteine-rich domain
domain: TFIIH p44 subunit cysteine-rich domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=83.68  E-value=0.5  Score=31.31  Aligned_cols=43  Identities=33%  Similarity=0.733  Sum_probs=32.7

Q ss_pred             CceecccccccccCcceeecCCCCCccchhHHHHHH-hcCCCCccc
Q 021708          107 GLECAVCLSELEDGEKARLLPKCNHGFHVECIDMWF-QSHSTCPLC  151 (309)
Q Consensus       107 ~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~Ci~~Wl-~~~~~CP~C  151 (309)
                      ...|--|...+.+ ......++|++.|+.+| +.++ +.-.+||-|
T Consensus        15 ~~~C~gC~~~l~~-~~~y~C~~C~~~FC~dC-D~fiHe~lh~CpgC   58 (59)
T d1z60a1          15 ERFCYGCQGELKD-QHVYVCAVCQNVFCVDC-DVFVHDSLHSCPGC   58 (59)
T ss_dssp             CCEETTTTEECTT-SEEECCTTTTCCBCHHH-HHTTTTTSCSSSTT
T ss_pred             CCCccCCCCcCCC-CceEECcCCCCcccccc-chhhhhhhcCCCCC
Confidence            4679999999864 34566888999999999 4455 445679988