Citrus Sinensis ID: 021710

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------31
Protein Sequence
MTTAALNSSHSHMSSPITHDLEITIICAKHLKNVNWRNGGDLKPYVVFYVDPAYRLATQSDDSGSTRPVWNERFTLPITHSVRESVLTLEIFHSKLSETPKPLVGSVKFPLAHLVDSDSSEPTQYVRKLEVLRPSGRPQGKIRVKLVLNGRPLPPPSQDYQSVPDFGHYYYSAPPPPFPPPSRDYSYYPSYYTPQPPAPPRPLFSRASSYSLPSGSLSVPSAPVDFSPSQDYKQPPLPPQPRASGYGVPSGSGPSAPVDYSPYDQKLQKQFGGLSLEEEVNRKGKEKRAESEFTPRENYSHSDYRYDY
Secondary Structure (PSIPRED)
ccccccccccccccccccEEEEEEEEEEcccccccccccccccEEEEEEEcccccEEcccccccccccccccEEEEEcccccccccEEEEEEEccccccccccEEEEEEEccccccccccccccEEEEEEEEcccccccEEEEEEEEEcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHcccccHHHHHcccccccccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
cccHHHccccccccccccEEEEEEEEEccccccccccccccEEEEEEEEEccccccccccccccccccccccEEEEEccccHccccEEEEEEEEcccccccccEEEEEEEHHHHccccccccccEEEEEEEEcccccccEEEEEEEEEccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHccccccHHHHHHHHcccccccccccccccc
Coil and Loop (DISEMBL)
mttaalnsshshmsspithdLEITIICAKHlknvnwrnggdlkpyvvfyvdpayrlatqsddsgstrpvwnerftlpithsvrESVLTLEIFHSklsetpkplvgsvkfplahlvdsdsseptqYVRKLEvlrpsgrpqgkIRVKLVlngrplpppsqdyqsvpdfghyyysappppfpppsrdysyypsyytpqppapprplfsrassyslpsgslsvpsapvdfspsqdykqpplppqprasgygvpsgsgpsapvdyspydqklqkqfgglsLEEEVNRKgkekraeseftprenyshsdyrydy
Flexible Loop (DISEMBL)
mttaalnsshshmsspitHDLEITIICAKHLKNVNWRNGGDLKPYVVFYVDPAYRLAtqsddsgstrpvWNERFTLPITHSVRESVLTLEIFHSKLSETPKPLVGSVKFPLAHlvdsdsseptqyvrklevlrpsgrpqgkIRVKLVLNGRPLPPPSQDYQSVPDFGHYYYSAPPPPFPPPSRDYSYYPSYYTPQPPAPPRPLFSRASSYSLPSGSLSVPSAPVDFSPSQDYKQPPLPPQPRASGYGVPSGSGPSAPVDYSPYDQKLQKQFGglsleeevnrkgkekraeseftprenyshsdyrydy
Low Complexity Region (SEG)
MTTAALNSSHSHMSSPITHDLEITIICAKHLKNVNWRNGGDLKPYVVFYVDPAYRLATQSDDSGSTRPVWNERFTLPITHSVRESVLTLEIFHSKLSETPKPLVGSVKFPLAHLVDSDSSEPTQYVRKLEVLRPSGRPQGKIRVKLVLNGRPLPPPSQDYQSVPDFGHyyysappppfpppsrdysyypsyytpqppapprplfsrassyslpsgslsvpsapvDFSPSQDYKQPPLPPQPRasgygvpsgsgpsapvDYSPYDQKLQKQFGGLSLEEEVNRKGKEKRAESEFTPRENYSHSDYRYDY
Disordered region (IsUnstruct)
****************ITHDLEITIICAKHLKNVNWRNGGDLKPYVVFYVDPAYRLAT********RPVWNERFTLPITHSVRESVLTLEIFHSKLSETPKPLVGSVKFPLAHLV****************************VKLV*****************DFGHYYY*****************************************************************************************************************************************
Disordered Region (DISOPRED)
**********************ITIICAKHLKNVNWRNGGDLKPYVVFYVDPAYRLATQSDDSGSTRPVWNERFTLPITHSVRESVLTLEIFHSKLSETPKPLVGSVKFPLAHLVDSDSSEPTQYVRKLEVLRPSGRPQGKIRVKLVLNGR************************************************************************************************************************GG*SL*****************TPRENYSH*******
Disordered Region (DISEMBL)
***************PITHDLEITIICAKHLKNVNWRNGGDLKPYVVFYVDPAYRLATQSDDSGSTRPVWNERFTLPITHSVRESVLTLEIFHSKLSETPKPLVGSVKFPLAHLVDSDSSEPTQYVRKLEVLRPSGRPQGKIRVKLVLNGRPLPPPSQDYQSVPDFGHYYYSAPPPPFPPPSRDYSYYPSYYTPQPPAPPRPLFSRASSYSLPSGSLSVPSAPV*******************************APVDYSPYDQKLQKQFGGLSLEE********************YSHSDYRYDY
Disordered Region (DISPRO)
****************ITHDLEITIICAKHLKNVNWRNGGDLKPYVVFYVDPAYRLATQSDDSGSTRPVWNERFTLPITHSVRESVLTLEIFHSKLSETPKPLVGSVKFPLAHLVDSDSSEPTQYVRKLEVLRPSGRPQGKIRVKLVLNGRPLPPPSQDYQSVPDFGHYYYSAPPPPFPPPSRDYSYYPSYYTPQPPAPPRPLFSRASSYSLPSGSLSVPSAPVDFSPSQDYKQPPLPPQPRASGYGVPSGSGPSAPVDYSPYDQKLQKQFGGLSLEEEVNRKGKEKRAESEFTPRENYSHSDYRY**
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
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Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
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TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MTTAALNSSHSHMSSPITHDLEITIICAKHLKNVNWRNGGDLKPYVVFYVDPAYRLATQSDDSGSTRPVWNERFTLPITHSVRESVLTLEIFHSKLSETPKPLVGSVKFPLAHLVDSDSSEPTQYVRKLEVLRPSGRPQGKIRVKLVLNGRPLPPPSQDYQSVPDFGHYYYSAPPPPFPPPSRDYSYYPSYYTPQPPAPPRPLFSRASSYSLPSGSLSVPSAPVDFSPSQDYKQPPLPPQPRASGYGVPSGSGPSAPVDYSPYDQKLQKQFGGLSLEEEVNRKGKEKRAESEFTPRENYSHSDYRYDY
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

No hits with e-value below 0.001 by BLAST

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	308
224106301	308	predicted protein [Populus trichocarpa]	0.918	0.918	0.579	4e-65
18390752	352	calcium-dependent lipid-binding domain [	0.918	0.803	0.473	5e-64
297849026	349	C2 domain-containing protein [Arabidopsi	0.918	0.810	0.485	7e-63
224059318	254	predicted protein [Populus trichocarpa]	0.743	0.901	0.577	9e-63
255571827	312	protein with unknown function [Ricinus c	0.847	0.836	0.459	9e-51
257831435	341	UPA18 [Capsicum annuum]	0.870	0.785	0.421	7e-46
118482030	311	unknown [Populus trichocarpa]	0.873	0.864	0.443	1e-45
224098519	311	predicted protein [Populus trichocarpa]	0.873	0.864	0.443	1e-45
225449206	267	PREDICTED: uncharacterized protein LOC10	0.847	0.977	0.440	7e-44
225434664	315	PREDICTED: uncharacterized protein LOC10	0.503	0.492	0.583	6e-43

>gi|224106301|ref|XP_002314120.1| predicted protein [Populus trichocarpa] gi|118483798|gb|ABK93791.1| unknown [Populus trichocarpa] gi|222850528|gb|EEE88075.1| predicted protein [Populus trichocarpa]

 Score =  254 bits (648), Expect = 4e-65,   Method: Compositional matrix adjust.
 Identities = 186/321 (57%), Positives = 219/321 (68%), Gaps = 38/321 (11%)

Query: 13  MSSPITHDLEITIICAKHLKNVNWRNGGDLKPYVVFYVDPA-YRLATQSDDSGSTRPVWN 71
           M+S  +HDLEITII AKHLKNVNWRNG DLKPY  FY+D +  RLAT +DDS STRPVWN
Sbjct: 1   MASSKSHDLEITIISAKHLKNVNWRNG-DLKPYATFYLDNSDRRLATHADDSLSTRPVWN 59

Query: 72  ERFTLPITHSVRESVLTLEIFHSKLSETPKPLVGSVKFPLAHLVDSDSSEPTQYVRKLEV 131
           ERFTLPIT  + +SVLTLEIFHSK SETP+PLVG+VKFPL++L+ SD S   + V  LE+
Sbjct: 60  ERFTLPITRQIYDSVLTLEIFHSKPSETPQPLVGTVKFPLSNLMVSDESLSCE-VLTLEL 118

Query: 132 LRPSGRPQGKIRVKLVLNGRPLPPPSQDYQSVPDFGHYY---YSAPPPPFPPPSRDY-SY 187
           LRPSGRPQGK+RVKL +  RPLPPP QDY + P++ HYY    + PPPP PPP+RDY  Y
Sbjct: 119 LRPSGRPQGKVRVKLEVKERPLPPPVQDYHTAPNYSHYYNPAPAPPPPPPPPPARDYREY 178

Query: 188 YPSYY----------TPQPPAPPRPLFSRASSYSLPSGSLSVPSAPVDFSPSQ-----DY 232
            PS Y             PP PPRPL++RAS+YSLP G    PSAPVD S        D+
Sbjct: 179 SPSPYGYADPYGYYPAYYPPQPPRPLYNRASNYSLPGG----PSAPVDLSAQSSPSPYDH 234

Query: 233 KQPPLPPQ--PRASGYGVPSGSGPSAPVDYS---PYDQKLQKQFGGLSLEEEVNRKGKEK 287
           K PP PP    + S YGVP  SGPSAPVDYS        +    GGLSLEE  N + KEK
Sbjct: 235 KPPPPPPGLFQKTSNYGVP--SGPSAPVDYSHGKGSGSLISGAMGGLSLEEGSNYE-KEK 291

Query: 288 RAESEFTPRENYSHSDYRYDY 308
            A    T +E++S+ DYR +Y
Sbjct: 292 VA----TDKESHSYHDYRREY 308

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|18390752|ref|NP_563785.1| calcium-dependent lipid-binding domain [Arabidopsis thaliana] gi|8778551|gb|AAF79559.1|AC022464_17 F22G5.35 [Arabidopsis thaliana] gi|15451132|gb|AAK96837.1| similar to SRC2 [Arabidopsis thaliana] gi|20148321|gb|AAM10051.1| similar to SRC2 dbj|BAA19769 [Arabidopsis thaliana] gi|332189984|gb|AEE28105.1| calcium-dependent lipid-binding domain [Arabidopsis thaliana]

 Score =  250 bits (639), Expect = 5e-64,   Method: Compositional matrix adjust.
 Identities = 170/359 (47%), Positives = 206/359 (57%), Gaps = 76/359 (21%)

Query: 13  MSSPITHDLEITIICAKHLKNVNWRNGGDLKPYVVFYVDPAYRLATQSDDSGSTRPVWNE 72
           M+S    DL +T++ AKHLKNVNWRNG DLKPYVV Y+D  + L+T+SDDS S +PVWNE
Sbjct: 1   MTSSEPLDLVVTVVSAKHLKNVNWRNG-DLKPYVVLYLDQDHPLSTRSDDSSSIKPVWNE 59

Query: 73  RFTLPITHSVRESVLTLEIFHSKLSETPKPLVGSVKFPLAHLVDSDSSEPTQYVRKLEVL 132
           R TLP+T SV ESVL +E+FHS  S+  K LVGSV+FPLA L+DSD S   + +  LE++
Sbjct: 60  RITLPLTRSVHESVLNIEVFHSNSSDLAKTLVGSVRFPLARLIDSDGSMIPELINSLELV 119

Query: 133 RPSGRPQGKIRVKLVLNGRPLPPPSQ----------DYQSVPDFGHYYYSA--------P 174
           RPSGRPQGKIR+KL +  RP+PPP            DY S P   HYY  +         
Sbjct: 120 RPSGRPQGKIRLKLAIKDRPIPPPQHPPPRPQSQPLDYYSAPQGNHYYSPSPPPPPPPQA 179

Query: 175 PPPFPPPSRDYSYYPSYYTPQPPA--------------PPRPLFSRASSYSLPSGSLSVP 220
           P   P P RDY  +    +P P A              PPR ++ RAS+Y LPSG    P
Sbjct: 180 PITAPSPQRDYREFSQSPSPSPYAFTDHYYSGYYYPPPPPRSMYDRASNYGLPSG----P 235

Query: 221 SAPVDFSPSQDYKQPPLPP--------------------------------QPRASGYGV 248
           SAPVD   S D+KQPPL P                                  R S YGV
Sbjct: 236 SAPVDAFSSIDHKQPPLAPPRFSNYGPPPSGPSAPVDAFLVTEYKPQAPPMGSRLSSYGV 295

Query: 249 PSGSGPSAPVDYSPYDQK-LQKQFGGLSLEEEVNRKGKEKRAESEFTPRENYSHS-DYR 305
           P+G  PSAPVDYSPYD + LQK  GGLSLEEE   +   +R+ES+F  R NYS+  DYR
Sbjct: 296 PNG--PSAPVDYSPYDHRQLQKTMGGLSLEEE---RAAAERSESDFGARPNYSYGRDYR 349

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297849026|ref|XP_002892394.1| C2 domain-containing protein [Arabidopsis lyrata subsp. lyrata] gi|297338236|gb|EFH68653.1| C2 domain-containing protein [Arabidopsis lyrata subsp. lyrata]

 Score =  246 bits (629), Expect = 7e-63,   Method: Compositional matrix adjust.
 Identities = 173/356 (48%), Positives = 207/356 (58%), Gaps = 73/356 (20%)

Query: 13  MSSPITHDLEITIICAKHLKNVNWRNGGDLKPYVVFYVDPAYRLATQSDDSGSTRPVWNE 72
           M+S    DL +T++ AKHLKNVNWRNG DLKPYVV Y+D  +  +T+SDDS S +PVWNE
Sbjct: 1   MASSEPLDLVVTVVSAKHLKNVNWRNG-DLKPYVVLYLDQDHPHSTRSDDSASIKPVWNE 59

Query: 73  RFTLPITHSVRESVLTLEIFHSKLSETPKPLVGSVKFPLAHLVDSDSSEPTQYVRKLEVL 132
           R TLP+T SV ESVL +EIFHS  S+  K LVGSV+FPLA L+DSD S   + +  LE++
Sbjct: 60  RITLPLTRSVHESVLNIEIFHSNSSDLAKTLVGSVRFPLARLIDSDGSMIPESINSLELV 119

Query: 133 RPSGRPQGKIRVKLVLNGRPLPPPSQ----------DYQSVPDFGHYYYSAPPPPF---- 178
           RPSGRPQGKIR+KL +  RP+PPP            DY S P   HYY   PPPP     
Sbjct: 120 RPSGRPQGKIRLKLAIKERPIPPPQHPPPRPQSQPLDYYSAPQGNHYYSPTPPPPQAPIT 179

Query: 179 -PPPSRDYSYYPSYYTPQPPA--------------PPRPLFSRASSYSLPSGSLSVPSAP 223
            P P RDY  +    +P P A              PPR ++ RAS+Y LPSG    PSAP
Sbjct: 180 SPSPQRDYREFSQSPSPSPYAFTDHYYSGYYYPPPPPRSMYDRASNYGLPSG----PSAP 235

Query: 224 VDFSPSQDYKQPPLPP--------------------------------QPRASGYGVPSG 251
           VD   S D+KQPPL P                                  R S YGVP  
Sbjct: 236 VDAFSSIDHKQPPLAPPRFSNYGPPPSGPSAPVDAFPGNEYKPQAPPIGSRLSSYGVP-- 293

Query: 252 SGPSAPVDYSPYDQK-LQKQFGGLSLEEEVNRKGKEKRAESEFTPRENYSHS-DYR 305
           +GPSAPVDYSPYD + LQK  GGLSLEEE   +   +R+ES+F  R NYS+  DYR
Sbjct: 294 NGPSAPVDYSPYDHRQLQKTMGGLSLEEE---RAAAERSESDFGARPNYSYGRDYR 346

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224059318|ref|XP_002299823.1| predicted protein [Populus trichocarpa] gi|222847081|gb|EEE84628.1| predicted protein [Populus trichocarpa]

 Score =  246 bits (628), Expect = 9e-63,   Method: Compositional matrix adjust.
 Identities = 157/272 (57%), Positives = 184/272 (67%), Gaps = 43/272 (15%)

Query: 13  MSSPITHDLEITIICAKHLKNVNWRNGGDLKPYVVFYVDPA-YRLATQSDDSGSTRPVWN 71
           M+SP    LEITII AKHLKNVNWRNG DLKPY  FY+D + +RLAT +DDS STRPVWN
Sbjct: 1   MASPKPLHLEITIISAKHLKNVNWRNG-DLKPYATFYLDNSDHRLATHADDSLSTRPVWN 59

Query: 72  ERFTLPITHSVRESVLTLEIFHSKLSETPKPLVGSVKFPLAHLVDSDSSEPTQY-VRKLE 130
           ERFT+P+     +SVLTL++FHSK SETPKPLVG+ KFPL+ L+DSD  E T Y +R LE
Sbjct: 60  ERFTIPMIR--HDSVLTLDVFHSKPSETPKPLVGTGKFPLSQLLDSD--ETTSYSLRTLE 115

Query: 131 VLRPSGRPQGKIRVKLVLNGRPLPPPSQDYQSVPDFGHYYYSAPPPPFPPPSRD------ 184
           + RPSGRPQGK+ VKL +  RPLPPP QDY + P++ HYY    P P  PP+RD      
Sbjct: 116 LSRPSGRPQGKVLVKLEVKDRPLPPPVQDYHTAPNYSHYYN---PAPVQPPARDYREYSP 172

Query: 185 --------YSYYPSYYTPQPPAPPRPLFSRASSYSLPSGSLSVPSAPVDFS--PS---QD 231
                   Y YYP+ Y  QPP P RPL++RAS+ S P G    PSAPVD S  PS    D
Sbjct: 173 SPYGYTDQYGYYPACYPSQPPVPSRPLYNRASNNSFPGG----PSAPVDLSCQPSPSPYD 228

Query: 232 YKQPPLPPQP----RASGYGVPSGSGPSAPVD 259
           +K    PPQP    + S YGVP  SGPSAPVD
Sbjct: 229 HK----PPQPVLLQKTSNYGVP--SGPSAPVD 254

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255571827|ref|XP_002526856.1| protein with unknown function [Ricinus communis] gi|223533755|gb|EEF35487.1| protein with unknown function [Ricinus communis]

 Score =  206 bits (525), Expect = 9e-51,   Method: Compositional matrix adjust.
 Identities = 147/320 (45%), Positives = 179/320 (55%), Gaps = 59/320 (18%)

Query: 24  TIICAKHLKNVNWRNGGDLKPYVVFYVDPAYRLATQSDDSGSTRPVWNERFTLPITHSVR 83
           TI+ AKHLKNVNW+NG DLK Y VF+VDP  RLAT+SDDSGSTRPVWNERFTLP++  + 
Sbjct: 17  TIVSAKHLKNVNWKNG-DLKAYAVFWVDPDRRLATKSDDSGSTRPVWNERFTLPLSLPLH 75

Query: 84  ESVLTLEIFHSKLSETPKPLVGSVKFPLAHLVDSDSSEPTQYVRKLEVLRPSGRPQGKIR 143
           +S  TLEIFHSK SETPKPLVG+++  L  L D D S     +R  E+ RPSGRPQGKIR
Sbjct: 76  DSYFTLEIFHSKPSETPKPLVGTLRVGLKDLFDPDDS---TRIRTFELTRPSGRPQGKIR 132

Query: 144 VKLVLNGRPLPPPS-----QDYQSVPDFGHYYYSAPPPPFPPPSRDYSY----------- 187
           +K+    RPLPPP      QDY   P   +YY +AP PP P   RDY Y           
Sbjct: 133 IKIGFRERPLPPPPPPPQVQDYHITPPQSYYYNTAPMPPAP---RDYRYGTASPPPPPPS 189

Query: 188 --YPSY--------------YTPQPPAPPRPLFSRASSYSLPSGSLSVPSAPVDFSPSQD 231
             Y SY              Y   PP PPRPLF R +     SG    PSAPVD+S S  
Sbjct: 190 LQYSSYHHDTYTAPSPYYSGYYSAPPMPPRPLFDRNN-----SGYSGGPSAPVDYSVS-- 242

Query: 232 YKQPPLPPQPRASGYGVPSGSGPSAPVDYSPYDQKLQKQFGGLSLEEEVNRKGKE--KRA 289
              P  P   R  G G  +G G    V        +    GG+++EE +  + ++  +R 
Sbjct: 243 --APASPYDQRQRGVGGKAGFGTGLAVG------AIAGALGGIAIEEGLKYEEEKIAERV 294

Query: 290 ESEFT-PRENYSHSDYRYDY 308
           E +    R++Y  SDYR DY
Sbjct: 295 EHDIAGSRDDY--SDYRVDY 312

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|257831435|gb|ACV71018.1| UPA18 [Capsicum annuum]

 Score =  190 bits (483), Expect = 7e-46,   Method: Compositional matrix adjust.
 Identities = 147/349 (42%), Positives = 179/349 (51%), Gaps = 81/349 (23%)

Query: 18  THDLEITIICAKHLKNVNWRNGGDLKPYVVFYVDPAYRLATQSDDSGSTRPVWNERFTLP 77
           T DLEITI+ AKHLKNVNW NG DL+PYV+F+VDP  R ATQSDDSG+TRPVWNERF L 
Sbjct: 14  TSDLEITIVSAKHLKNVNWHNG-DLRPYVIFWVDPDQRRATQSDDSGNTRPVWNERFILH 72

Query: 78  ITHSVRESVLTLEIFHSKLSETPKPLVGSVKFPLAHLVDSDSSEPTQYVRKLEVLRPSGR 137
           +  S +++VLTLEIFHSK S+TPKPLVG+++ PL  LV+ D       VR  E+ RPSGR
Sbjct: 73  LPQSRQDTVLTLEIFHSKPSDTPKPLVGTLRVPLKELVNIDDFGK---VRSFELRRPSGR 129

Query: 138 PQGKIRVKLVLNGRPLPPPSQDYQSVPDFGHYYYSAPPPPFPPPSRDYSYY--------- 188
           P GKI++KL   G        DYQ VP  G+YY +APP     P   Y  Y         
Sbjct: 130 PHGKIKLKL---GVREVSRIHDYQIVPPSGYYYSTAPPQQQQQPPPSYRTYPPASPPPST 186

Query: 189 ----PSYYTPQPPAPPRPLFS---------------------RASSYSLPSGSLSVPSAP 223
                ++  P       P  S                     R SSY    G  S PSAP
Sbjct: 187 PPSHSAHSYPYGGGYSDPYLSSSYYPGYYAQPPPPPPRPFVDRQSSY---GGLGSRPSAP 243

Query: 224 VDFSPSQDYKQPPLPPQ--PRASGYGVPSGSGPSAPVDYS--PYDQKLQKQFG------- 272
           VD++P      PP  PQ   R + YG   GS  SAPVDY+  P+DQ L  + G       
Sbjct: 244 VDYAP------PPYDPQRSERQASYGGGLGSRSSAPVDYAPPPHDQNLSGKMGVGTGLAV 297

Query: 273 --------------GLSLEEEVNRKGK-EKRAESEFTPRENYSHSDYRY 306
                         GL  EE     GK  +R E+    R++YS+    Y
Sbjct: 298 GAAAGALGGLTLAEGLKYEE-----GKIAERVENNMAARDDYSNYSVEY 341

Source: Capsicum annuum

Species: Capsicum annuum

Genus: Capsicum

Family: Solanaceae

Order: Solanales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|118482030|gb|ABK92946.1| unknown [Populus trichocarpa]

 Score =  189 bits (481), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 137/309 (44%), Positives = 170/309 (55%), Gaps = 40/309 (12%)

Query: 24  TIICAKHLKNVNWRNGGDLKPYVVFYVDPAYRLATQSDDSGSTRPVWNERFTLPITHSVR 83
           TII AKHLKNVNW+ G DLKPY VF+VDP+ RL+T+SD+SGSTRPVWNERFTLP+T ++R
Sbjct: 17  TIISAKHLKNVNWKTG-DLKPYAVFWVDPSRRLSTKSDESGSTRPVWNERFTLPLTFALR 75

Query: 84  ESVLTLEIFHSKLSETPKPLVGSVKFPLAHLVDSDSSEPTQYVRKLEVLRPSGRPQGKIR 143
           +S LTLEIFHSK SETPKPLVG+++  L  L D D S     VR LE+ RPSGRPQGKIR
Sbjct: 76  DSFLTLEIFHSKPSETPKPLVGTLRVALKDLSDPDDS---NRVRTLELTRPSGRPQGKIR 132

Query: 144 VKLVLNGRPLPPPSQDYQ--SVPDFGHYYYSAPPPPFPPPSRDYSYYPSYYTPQPPAPPR 201
           +KL +  RP  P         +     YYYS    P PP  R  S         PP P  
Sbjct: 133 IKLGVRERPFSPHPPPQPVYGITAPQSYYYSGAAVPPPPDYRRLSMALPASLSPPPPP-- 190

Query: 202 PLFSRASSYSLPSGSLSVPSAPVDFSPSQDYKQPPLPPQPRASGYGVPSGSGPSAPVDYS 261
                A  Y     +   P  P   S +      P P   R  G     GSGPSAPVDY 
Sbjct: 191 -----APHYGPYHDAYPPPYYPGYHSSAPPPPTQPRPFLDRTMG---SYGSGPSAPVDYG 242

Query: 262 PYDQKLQKQ--------------------FGGLSLEEEVNRKGKE--KRAESEFTPRENY 299
            YD + ++                      GGL+LEE +  + ++  ++ E++   R++Y
Sbjct: 243 SYDTQRERHKGGKSMGFGTGLAVGAVAGALGGLALEEGLKHEDEKIAEKVENDLATRDDY 302

Query: 300 SHSDYRYDY 308
             SDYR DY
Sbjct: 303 --SDYRADY 309

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224098519|ref|XP_002311204.1| predicted protein [Populus trichocarpa] gi|222851024|gb|EEE88571.1| predicted protein [Populus trichocarpa]

 Score =  189 bits (481), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 137/309 (44%), Positives = 170/309 (55%), Gaps = 40/309 (12%)

Query: 24  TIICAKHLKNVNWRNGGDLKPYVVFYVDPAYRLATQSDDSGSTRPVWNERFTLPITHSVR 83
           TII AKHLKNVNW+ G DLKPY VF+VDP+ RL+T+SD+SGSTRPVWNERFTLP+T ++R
Sbjct: 17  TIISAKHLKNVNWKTG-DLKPYAVFWVDPSRRLSTKSDESGSTRPVWNERFTLPLTFALR 75

Query: 84  ESVLTLEIFHSKLSETPKPLVGSVKFPLAHLVDSDSSEPTQYVRKLEVLRPSGRPQGKIR 143
           +S LTLEIFHSK SETPKPLVG+++  L  L D D S     VR LE+ RPSGRPQGKIR
Sbjct: 76  DSFLTLEIFHSKPSETPKPLVGTLRVALKDLSDPDDS---NRVRTLELTRPSGRPQGKIR 132

Query: 144 VKLVLNGRPLPPPSQDYQ--SVPDFGHYYYSAPPPPFPPPSRDYSYYPSYYTPQPPAPPR 201
           +KL +  RP  P         +     YYYS    P PP  R  S         PP P  
Sbjct: 133 IKLGVRERPFSPHPPPQPVYGITAPQSYYYSGAAIPPPPDYRRLSMALPASLSPPPPP-- 190

Query: 202 PLFSRASSYSLPSGSLSVPSAPVDFSPSQDYKQPPLPPQPRASGYGVPSGSGPSAPVDYS 261
                A  Y     +   P  P   S +      P P   R  G     GSGPSAPVDY 
Sbjct: 191 -----APHYGPYHDAYPPPYYPGYHSSAPPPPTQPRPFLDRTMG---SYGSGPSAPVDYG 242

Query: 262 PYDQKLQKQ--------------------FGGLSLEEEVNRKGKE--KRAESEFTPRENY 299
            YD + ++                      GGL+LEE +  + ++  ++ E++   R++Y
Sbjct: 243 SYDTQRERHKGGKSMGFGTGLAVGAVAGALGGLALEEGLKHEDEKIAEKVENDLATRDDY 302

Query: 300 SHSDYRYDY 308
             SDYR DY
Sbjct: 303 --SDYRADY 309

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225449206|ref|XP_002279465.1| PREDICTED: uncharacterized protein LOC100266706 [Vitis vinifera]

 Score =  183 bits (465), Expect = 7e-44,   Method: Compositional matrix adjust.
 Identities = 133/302 (44%), Positives = 172/302 (56%), Gaps = 41/302 (13%)

Query: 13  MSSPITHDLEITIICAKHLKNVNWRNGGDLKPYVVFYVDPAYRLATQSDDSGSTRPVWNE 72
           M+S    D+++T++ AKHL+NVNW++G +LKPY +F+VDP  RLAT+ D+SGST PVWNE
Sbjct: 1   MASSRPLDIDLTVVSAKHLQNVNWKHG-ELKPYAIFWVDPDRRLATKPDESGSTCPVWNE 59

Query: 73  RFTLPITHSVRESVLTLEIFHSKLSETPKPLVGSVKFPLAHLVDSDSSEPTQYVRKLEVL 132
           RFT+ +   + +SVLTLE+FHSK SETPKPLVGS++ PL  LVDSD S     ++  ++ 
Sbjct: 60  RFTVSVNLPLHDSVLTLEVFHSKPSETPKPLVGSLQVPLKDLVDSDDS---NRIKTFQLR 116

Query: 133 RPSGRPQGKIRVKLVLNGRPLPPPSQDYQSVPDFGHYYYSAPPPPFPPPSRDYSYYPSYY 192
           RPSGRPQGKIRVKL +  RP  PP+ DY   P    +YYS+ PPP  P    YS+     
Sbjct: 117 RPSGRPQGKIRVKLAIRERP-SPPAPDYYLTPPVS-FYYSSAPPPPAPNPVGYSHLSHTI 174

Query: 193 TPQPPAPPRP------LFSRASSYSLPSGSLSVPSAPVDFSPSQDYKQPPLPPQPRASGY 246
              PP P  P       F           S + P     F  S +Y              
Sbjct: 175 PLPPPVPQSPSPHPYGTFCNPYPGYYGYYSRAPPPPRPFFDWSANY-------------- 220

Query: 247 GVPSGSGPSAPVDYSPYDQKLQKQFGGLSLEEEVNRKGKEKRAESEFTPRENYSHSDYRY 306
                 GPSAPVD+SPYD   QKQ G    E ++     + RAESE   R+ Y   D+R+
Sbjct: 221 -----GGPSAPVDHSPYD---QKQMGVKYEEAKI-----KDRAESELGARDYY--KDHRF 265

Query: 307 DY 308
           DY
Sbjct: 266 DY 267

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225434664|ref|XP_002280187.1| PREDICTED: uncharacterized protein LOC100260337 [Vitis vinifera] gi|297745939|emb|CBI15995.3| unnamed protein product [Vitis vinifera]

 Score =  180 bits (457), Expect = 6e-43,   Method: Compositional matrix adjust.
 Identities = 94/161 (58%), Positives = 113/161 (70%), Gaps = 6/161 (3%)

Query: 1   MTTAALNSSHSHMSSPITHDLEITIICAKHLKNVNWRNGGDLKPYVVFYVDPAYRLATQS 60
           M T+ +        S +  DL++TI+ AKHLKNVNWRNG DLKPY +F+VDP  R AT+ 
Sbjct: 1   MATSRIQPPPPPPQSKLM-DLDVTIVSAKHLKNVNWRNG-DLKPYAIFWVDPERRFATKP 58

Query: 61  DDSGSTRPVWNERFTLPITHSVRESVLTLEIFHSKLSETPKPLVGSVKFPLAHLVDSDSS 120
           DD GSTRPVWNE F++PI     +SV TLEIFHSK SETPKPLVG ++FP+  LVDSD  
Sbjct: 59  DDCGSTRPVWNEHFSIPINTPPYDSVFTLEIFHSKPSETPKPLVGVLRFPIKDLVDSD-- 116

Query: 121 EPTQYVRKLEVLRPSGRPQGKIRVKLVLNGRPLPPPSQDYQ 161
           E    +R LE+ RPSGRP GKIR+KL L  R  PPP+ DY 
Sbjct: 117 ESANSIRTLELRRPSGRPNGKIRIKLAL--RERPPPTPDYH 155

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	308
TAIR|locus:2025002	352	AT1G07310 "AT1G07310" [Arabido	0.493	0.431	0.581	3.7e-60
TAIR|locus:2172828	219	AT5G23950 "AT5G23950" [Arabido	0.422	0.593	0.392	7e-22
TAIR|locus:2041654	401	AT2G13350 "AT2G13350" [Arabido	0.405	0.311	0.335	9.7e-09
TAIR|locus:2124933	250	AT4G01200 "AT4G01200" [Arabido	0.431	0.532	0.276	3.9e-07
TAIR|locus:2102980	391	AT3G04360 "AT3G04360" [Arabido	0.415	0.327	0.315	4.7e-06
TAIR|locus:2036004	324	SRC2 "AT1G09070" [Arabidopsis	0.392	0.373	0.293	0.00015
TAIR|locus:2100992	510	NTMC2T4 [Arabidopsis thaliana	0.389	0.235	0.265	0.00018
TAIR|locus:2184931	569	SYTD "AT5G11100" [Arabidopsis	0.396	0.214	0.263	0.00048

TAIR|locus:2025002 AT1G07310 "AT1G07310" [Arabidopsis thaliana (taxid:3702)]

 Score = 477 (173.0 bits), Expect = 3.7e-60, Sum P(3) = 3.7e-60
 Identities = 96/165 (58%), Positives = 118/165 (71%)

Query:    14 SSPITHDLEITIICAKHLKNVNWRNGGDLKPYVVFYVDPAYRLATQSDDSGSTRPVWNER 73
             S P+  DL +T++ AKHLKNVNWRNG DLKPYVV Y+D  + L+T+SDDS S +PVWNER
Sbjct:     4 SEPL--DLVVTVVSAKHLKNVNWRNG-DLKPYVVLYLDQDHPLSTRSDDSSSIKPVWNER 60

Query:    74 FTLPITHSVRESVLTLEIFHSKLSETPKPLVGSVKFPLAHLVDSDSSEPTQYVRKLEVLR 133
              TLP+T SV ESVL +E+FHS  S+  K LVGSV+FPLA L+DSD S   + +  LE++R
Sbjct:    61 ITLPLTRSVHESVLNIEVFHSNSSDLAKTLVGSVRFPLARLIDSDGSMIPELINSLELVR 120

Query:   134 PSGRPQGKIRVKLVLNGRPLPPP--------SQ--DYQSVPDFGH 168
             PSGRPQGKIR+KL +  RP+PPP        SQ  DY S P   H
Sbjct:   121 PSGRPQGKIRLKLAIKDRPIPPPQHPPPRPQSQPLDYYSAPQGNH 165

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2172828 AT5G23950 "AT5G23950" [Arabidopsis thaliana (taxid:3702)]

 Score = 255 (94.8 bits), Expect = 7.0e-22, P = 7.0e-22
 Identities = 53/135 (39%), Positives = 81/135 (60%)

Query:    20 DLEITIICAKHLKNVNWRNGGDLKPYVVFYVDPAYRLATQSDDSGSTRPVWNERFT--LP 77
             ++E+TI  AK +KNVNWRNG + KPY V ++DP ++ +T+ D+ G+T   WNE F   LP
Sbjct:     7 EVEVTISSAKDIKNVNWRNGPN-KPYAVVWIDPKFKSSTRVDEDGNTCTTWNETFVIALP 65

Query:    78 ITHSVRESVLTLEIFHSKLSETPKPLVGSVKFPLAHLVDSDSSEPTQYVRKLEVLRPSGR 137
               +   + V  + I H+   E  KPL+GS    L  ++D D      +++ L++ RPSGR
Sbjct:    66 PANDDDDKVY-INIVHAGREENTKPLIGSAHLSLRDVID-DVGFGVPFMKTLKLKRPSGR 123

Query:   138 PQGKIRVKLVLNGRP 152
             PQGK+ V + +   P
Sbjct:   124 PQGKLDVTVTVRETP 138

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2041654 AT2G13350 "AT2G13350" [Arabidopsis thaliana (taxid:3702)]

 Score = 152 (58.6 bits), Expect = 9.7e-09, P = 9.7e-09
 Identities = 47/140 (33%), Positives = 74/140 (52%)

Query:    21 LEITIICAKHLKNVNWRNGGDLKPYVVFYVDPAYRLATQSDDSGSTRPVWNERFTLPITH 80
             LE+ II A+ L  V       +K Y + ++DP  +L T+ D++G T P WN++F   +  
Sbjct:    10 LELNIISAQELAPV----ARCMKTYAIAWIDPERKLTTRVDNTGGTSPTWNDKFVFRLDE 65

Query:    81 SV---RESVLTLEIFHSKLSETPKPLVGSVKFPLAHLVDSDSSEPTQYVRKLEVLRPSGR 137
                    S++ +EI+   L       VG+V+  ++ LV   S+   ++V  LEVLR SGR
Sbjct:    66 EALYDATSIVVIEIY--ALHWFKDIHVGTVQALISDLVSPSSA--MRFVT-LEVLRASGR 120

Query:   138 PQG--KIRVKLVLN-GRPLP 154
             P G   I V L+ N G+ +P
Sbjct:   121 PHGLLNIAVGLIDNSGQSMP 140

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

GO:0006944 "cellular membrane fusion" evidence=RCA

TAIR|locus:2124933 AT4G01200 "AT4G01200" [Arabidopsis thaliana (taxid:3702)]

 Score = 135 (52.6 bits), Expect = 3.9e-07, P = 3.9e-07
 Identities = 39/141 (27%), Positives = 75/141 (53%)

Query:    18 THDLEITIICAKHLKNVNWRNGGDLKPYVVFYVDPAYRLATQSDDSGSTRPVWNERFTLP 77
             T  LEI +I A+ LK    +    L+ Y   +VD + +L T+ D  GS  P+WN++F   
Sbjct:     4 TQVLEINLISAQGLKEPTGKLRR-LQTYASVWVDSSSKLRTRIDRIGSENPIWNDKFVFQ 62

Query:    78 ITH---SVRESVLTLEIFHSKLSETPKPLVGSVKFPLAHLVDSDSSEPTQYVRKLEVLRP 134
             ++    S   S +++EI+   +      L+G+V+F +++ + + + +    V  L++ RP
Sbjct:    63 VSPEFLSSETSGVSIEIY--AVGYLRDHLIGTVRFLVSNFLPTAAVKVPSLVA-LQIRRP 119

Query:   135 SGRPQGKIRVK-LVLNGRPLP 154
             SG+  G + +  +V++   LP
Sbjct:   120 SGKFHGVLNIAAMVMDASELP 140

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2102980 AT3G04360 "AT3G04360" [Arabidopsis thaliana (taxid:3702)]

 Score = 130 (50.8 bits), Expect = 4.7e-06, P = 4.7e-06
 Identities = 48/152 (31%), Positives = 77/152 (50%)

Query:    21 LEITIICAKHLKNVNWRNGGDLKPYVVFYV--DPAYRLATQSDDSGSTRPVWNERFTLPI 78
             LEI +I A+ L  V+ RN   +K Y V ++  DP  +L T+ D S    P+WNE+F   +
Sbjct:    11 LEINLISAQDLAPVS-RN---MKTYSVAWINTDPMRKLTTRVDQSNRANPIWNEKFVFRV 66

Query:    79 THS---VRESVLTLEIFHSKLSETPKPLVGSVKFPLAHLV--------DSDSSEPTQYVR 127
                   V  S + +EI+ +  ++    LVG+V   L+ L          +D       +R
Sbjct:    67 NDKILYVDASAIVIEIYAAAWAKDA--LVGTVNVLLSDLFAPWSGFGDGNDGGGGNNNMR 124

Query:   128 --KLEVLRPSGRPQGKIRVKL-VLNG--RPLP 154
                L++ RPSGR QG +R+ + +L+G  R +P
Sbjct:   125 LVTLQIRRPSGRLQGFLRLGVALLDGGQRSMP 156

GO:0003674 "molecular_function" evidence=ND

GO:0005576 "extracellular region" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2036004 SRC2 "AT1G09070" [Arabidopsis thaliana (taxid:3702)]

 Score = 116 (45.9 bits), Expect = 0.00015, P = 0.00015
 Identities = 37/126 (29%), Positives = 60/126 (47%)

Query:    21 LEITIICAKHLKNVNWRNGGDLKPYVVFYVDPAYRLATQSDDSGSTRPVWNERFTLPITH 80
             L++TII A+ LK+V      DL   V    D   +  T+ D    T+P W  +  L +  
Sbjct:     6 LDLTIISAEDLKDVQLIGKQDLYAVVSINGDARTKQKTKVDKDCGTKPKWKHQMKLTVDD 65

Query:    81 SV-RESVLTL--EIFHSKLSETPKPLVGSVKFPLAHLVDSDSSEPTQYVRKLEVLRPSGR 137
             +  R++ LTL  EI   +     KP VG V  P+  L+D +  +  + V    V  P+G+
Sbjct:    66 AAARDNRLTLVFEIVADRPIAGDKP-VGEVSVPVKELLDQNKGDEEKTVT-YAVRLPNGK 123

Query:   138 PQGKIR 143
              +G ++
Sbjct:   124 AKGSLK 129

GO:0000326 "protein storage vacuole" evidence=IDA

GO:0005515 "protein binding" evidence=IPI

GO:0005783 "endoplasmic reticulum" evidence=IDA

GO:0006623 "protein targeting to vacuole" evidence=RCA;TAS

GO:0006612 "protein targeting to membrane" evidence=RCA

GO:0006820 "anion transport" evidence=RCA

GO:0006862 "nucleotide transport" evidence=RCA

GO:0006888 "ER to Golgi vesicle-mediated transport" evidence=RCA

GO:0006944 "cellular membrane fusion" evidence=RCA

GO:0009611 "response to wounding" evidence=RCA

GO:0009612 "response to mechanical stimulus" evidence=RCA

GO:0009646 "response to absence of light" evidence=RCA

GO:0010200 "response to chitin" evidence=RCA

GO:0010363 "regulation of plant-type hypersensitive response" evidence=RCA

GO:0015696 "ammonium transport" evidence=RCA

GO:0015802 "basic amino acid transport" evidence=RCA

GO:0043069 "negative regulation of programmed cell death" evidence=RCA

GO:0043090 "amino acid import" evidence=RCA

GO:0043269 "regulation of ion transport" evidence=RCA

GO:0005886 "plasma membrane" evidence=IDA

TAIR|locus:2100992 NTMC2T4 [Arabidopsis thaliana (taxid:3702)]

 Score = 118 (46.6 bits), Expect = 0.00018, P = 0.00018
 Identities = 34/128 (26%), Positives = 63/128 (49%)

Query:    21 LEITIICAKHLKNVNWRNGGDLKPYVVFYVDPAYRLATQSDDSGSTRPVWNERFTLPITH 80
             L +T++ A +LKN       D  PY   Y+ P ++  T++ ++ +  PVW++ F L I  
Sbjct:   265 LIVTVVKATNLKNKELIGKSD--PYATIYIRPVFKYKTKAIEN-NLNPVWDQTFEL-IAE 320

Query:    81 SVRESVLTLEIFHSKLSETPKPLVGSVKFPLAHLVDSDSSE-PTQYVRKLEVLRPSGRP- 138
                   LT+E+F   + +  +  +G VK PL+ L    + E     +  L+ L+   +  
Sbjct:   321 DKETQSLTVEVFDKDVGQDER--LGLVKLPLSSLEAGVTKELELNLLSSLDTLKVKDKKD 378

Query:   139 QGKIRVKL 146
             +G I +K+
Sbjct:   379 RGSITLKV 386

GO:0005886 "plasma membrane" evidence=ISM;IDA

GO:0008289 "lipid binding" evidence=ISS;IDA

GO:0009414 "response to water deprivation" evidence=IMP

GO:0009651 "response to salt stress" evidence=IMP

GO:0009958 "positive gravitropism" evidence=IMP

GO:0031965 "nuclear membrane" evidence=IDA

GO:0043565 "sequence-specific DNA binding" evidence=IDA;IPI

GO:0045892 "negative regulation of transcription, DNA-dependent" evidence=IMP

GO:0005783 "endoplasmic reticulum" evidence=IDA

TAIR|locus:2184931 SYTD "AT5G11100" [Arabidopsis thaliana (taxid:3702)]

 Score = 115 (45.5 bits), Expect = 0.00048, P = 0.00048
 Identities = 34/129 (26%), Positives = 62/129 (48%)

Query:    21 LEITIICAKHLKNVNWRNGGDLKPYVVFYVDPAY-RLATQSDDSGSTRPVWNERFTLPIT 79
             L++ ++ AK L N +     D  PY + ++ P   R       S S  P+WNE F   I 
Sbjct:   266 LDVKVVQAKDLANKDMIGKSD--PYAIVFIRPLPDRTKKTKTISNSLNPIWNEHFEF-IV 322

Query:    80 HSVRESVLTLEIFHSKLSETPKPLVGSVKFPLAHLVDSDSSEP-TQYVRKLEVLRPSGRP 138
               V    LT+ +F  +       L+G+ + PL  LV     +   + V+ LE+ R + + 
Sbjct:   323 EDVSTQHLTVRVFDDE-GVGSSQLIGAAQVPLNELVPGKVKDIWLKLVKDLEIQRDT-KN 380

Query:   139 QGKIRVKLV 147
             +G+++++L+
Sbjct:   381 RGQVQLELL 389


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.314   0.133   0.399    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      308       236   0.00089  113 3  11 23  0.49    33
                                                     32  0.43    36


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  8
  No. of states in DFA:  596 (63 KB)
  Total size of DFA:  188 KB (2107 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  22.65u 0.13s 22.78t   Elapsed:  00:00:01
  Total cpu time:  22.65u 0.13s 22.78t   Elapsed:  00:00:01
  Start:  Fri May 10 08:19:45 2013   End:  Fri May 10 08:19:46 2013

GO:0003674 "molecular_function" evidence=ND

GO:0005886 "plasma membrane" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0009887 "organ morphogenesis" evidence=RCA

GO:0009888 "tissue development" evidence=RCA

GO:0010638 "positive regulation of organelle organization" evidence=RCA

GO:0016126 "sterol biosynthetic process" evidence=RCA

GO:0019745 "pentacyclic triterpenoid biosynthetic process" evidence=RCA

GO:0033044 "regulation of chromosome organization" evidence=RCA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: estExt_fgenesh4_pg.C_LG_IX1143 SubName- Full=Putative uncharacterized protein; (308 aa) (Populus trichocarpa)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	308
cd04051	125	cd04051, C2_SRC2_like, C2 domain present in Soybea	3e-33
cd00030	102	cd00030, C2, C2 domain	8e-14
smart00239	101	smart00239, C2, Protein kinase C conserved region	2e-11
pfam00168	85	pfam00168, C2, C2 domain	6e-09
cd04044	124	cd04044, C2A_Tricalbin-like, C2 domain first repea	3e-08
cd04040	115	cd04040, C2D_Tricalbin-like, C2 domain fourth repe	7e-07
cd08382	123	cd08382, C2_Smurf-like, C2 domain present in Smad	1e-06
cd04021	125	cd04021, C2_E3_ubiquitin_ligase, C2 domain present	7e-06
cd04014	132	cd04014, C2_PKC_epsilon, C2 domain in Protein Kina	9e-06
COG5038	1227	COG5038, COG5038, Ca2+-dependent lipid-binding pro	1e-04
PHA03247	3151	PHA03247, PHA03247, large tegument protein UL36; P	6e-04
PHA03247	3151	PHA03247, PHA03247, large tegument protein UL36; P	9e-04
cd04015	158	cd04015, C2_plant_PLD, C2 domain present in plant	0.001
PRK10263	1355	PRK10263, PRK10263, DNA translocase FtsK; Provisio	0.001
cd08390	123	cd08390, C2A_Synaptotagmin-15-17, C2A domain first	0.001
pfam04652	315	pfam04652, DUF605, Vta1 like	0.001
cd00276	134	cd00276, C2B_Synaptotagmin, C2 domain second repea	0.004
pfam10358	142	pfam10358, NT-C2, N-terminal C2 in EEIG1 and EHBP1	0.004

>gnl|CDD|176016 cd04051, C2_SRC2_like, C2 domain present in Soybean genes Regulated by Cold 2 (SRC2)-like proteins

 Score =  118 bits (298), Expect = 3e-33
 Identities = 45/128 (35%), Positives = 66/128 (51%), Gaps = 6/128 (4%)

Query: 20  DLEITIICAKHLKNVNWRNGGDLKPYVVFYVDPAYRLATQSDDSGSTRPVWNERFTLPIT 79
            LEITII A+ LKNVN    G +K Y V ++DP+++ +T  D  G T P WNE    P+ 
Sbjct: 1   TLEITIISAEDLKNVNLF--GKMKVYAVVWIDPSHKQSTPVDRDGGTNPTWNETLRFPLD 58

Query: 80  HSV---RESVLTLEIFHSKLSETPKPLVGSVKFPLAHLVDSDSSEPTQYVRKLEVLRPSG 136
             +       LT+E++  +       L+G V+ PL  L+D  S          ++ RPSG
Sbjct: 59  ERLLQQGRLALTIEVYCER-PSLGDKLIGEVRVPLKDLLDGASPAGELRFLSYQLRRPSG 117

Query: 137 RPQGKIRV 144
           +PQG +  
Sbjct: 118 KPQGVLNF 125

SRC2 production is a response to pathogen infiltration. The initial response of increased Ca2+ concentrations are coupled to downstream signal transduction pathways via calcium binding proteins. SRC2 contains a single C2 domain which localizes to the plasma membrane and is involved in Ca2+ dependent protein binding. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Length = 125

>gnl|CDD|175973 cd00030, C2, C2 domain

 Score = 65.9 bits (161), Expect = 8e-14
 Identities = 27/105 (25%), Positives = 45/105 (42%), Gaps = 5/105 (4%)

Query: 21  LEITIICAKHLKNVNWRNGGDLKPYVVFYVDPAYRLATQSDDSGSTRPVWNERFTLPITH 80
           L +T+I A++L   +     D  PYV   +    +  T+   +    PVWNE F  P+  
Sbjct: 1   LRVTVIEARNLPAKDLNGKSD--PYVKVSLGGKQKFKTKVVKNTLN-PVWNETFEFPVLD 57

Query: 81  SVRESVLTLEIFHSKLSETPKPLVGSVKFPLAHLVDSDSSEPTQY 125
                 LT+E++      +    +G V+ PL+ L+DS        
Sbjct: 58  -PESDTLTVEVWDKDRF-SKDDFLGEVEIPLSELLDSGKEGELWL 100

The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Length = 102

>gnl|CDD|214577 smart00239, C2, Protein kinase C conserved region 2 (CalB)

 Score = 59.0 bits (143), Expect = 2e-11
 Identities = 25/103 (24%), Positives = 42/103 (40%), Gaps = 5/103 (4%)

Query: 21  LEITIICAKHLKNVNWRNGGDLKPYVVFYVDPAYRLATQSD-DSGSTRPVWNERFTLPIT 79
           L + II A++L   +   GG   PYV   +D   +   ++     +  PVWNE F   + 
Sbjct: 2   LTVKIISARNLPPKD--KGGKSDPYVKVSLDGDPKEKKKTKVVKNTLNPVWNETFEFEVP 59

Query: 80  HSVRESVLTLEIFHSKLSETPKPLVGSVKFPLAHLVDSDSSEP 122
                + L +E++           +G V  PL+ L+     E 
Sbjct: 60  PPE-LAELEIEVYDKD-RFGRDDFIGQVTIPLSDLLLGGRHEK 100

Ca2+-binding motif present in phospholipases, protein kinases C, and synaptotagmins (among others). Some do not appear to contain Ca2+-binding sites. Particular C2s appear to bind phospholipids, inositol polyphosphates, and intracellular proteins. Unusual occurrence in perforin. Synaptotagmin and PLC C2s are permuted in sequence with respect to N- and C-terminal beta strands. SMART detects C2 domains using one or both of two profiles. Length = 101

>gnl|CDD|215765 pfam00168, C2, C2 domain

 Score = 51.9 bits (125), Expect = 6e-09
 Identities = 23/81 (28%), Positives = 35/81 (43%), Gaps = 16/81 (19%)

Query: 21 LEITIICAKHLKNVNWRNGGDLKPYVVFYVDPAYRLATQSDDSGSTR-------PVWNER 73
          L +T+I AK+L   +    G   PYV   +        Q  D+  T+       PVWNE 
Sbjct: 1  LRVTVISAKNLPPKD--LNGKSDPYVKVSLGG------QKKDTKKTKVVKNTLNPVWNET 52

Query: 74 FTLPITHSVRESVLTLEIFHS 94
          FT  +T     + L +E++  
Sbjct: 53 FTFEVTLP-ELAELRIEVYDY 72

Length = 85

>gnl|CDD|176009 cd04044, C2A_Tricalbin-like, C2 domain first repeat present in Tricalbin-like proteins

 Score = 51.0 bits (123), Expect = 3e-08
 Identities = 36/124 (29%), Positives = 60/124 (48%), Gaps = 11/124 (8%)

Query: 21  LEITIICAKHLKNVNWRNGGDLKPYVVFYVDPAYRLATQSDDSGSTRPVWNERFTLPITH 80
           L +TI  A+ LK  +   GG + PYV F +     LA       ++ PVWNE   + +  
Sbjct: 4   LAVTIKSARGLKGSD-IIGGTVDPYVTFSISNRRELARTKVKKDTSNPVWNETKYILVN- 61

Query: 81  SVRESVLTLEIFHSKLSETPKP-LVGSVKFPLAHLVDSDSSEPTQYVRKLEVLRPSGRPQ 139
           S+ E  L L ++    ++  K  L+G+ +F L+ L+      P Q      +LR +G+P 
Sbjct: 62  SLTEP-LNLTVYD--FNDKRKDKLIGTAEFDLSSLLQ----NPEQENLTKNLLR-NGKPV 113

Query: 140 GKIR 143
           G++ 
Sbjct: 114 GELN 117

5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the first C2 repeat, C2A, and has a type-II topology. Length = 124

>gnl|CDD|176005 cd04040, C2D_Tricalbin-like, C2 domain fourth repeat present in Tricalbin-like proteins

 Score = 46.8 bits (112), Expect = 7e-07
 Identities = 34/114 (29%), Positives = 55/114 (48%), Gaps = 16/114 (14%)

Query: 21  LEITIICAKHLKNVNWRNG-GDLKPYVVFYVD--PAYRLATQSDDSGST-RPVWNERFTL 76
           L + +I A++L + + RNG  D  P+V FY++    ++  T       T  PVWNE F +
Sbjct: 1   LTVDVISAENLPSAD-RNGKSD--PFVKFYLNGEKVFKTKTIK----KTLNPVWNESFEV 53

Query: 77  PITHSVRESVLTLEIFHSKLSETPKPLVGSVKFPLAHLVDSDSSEPTQYVRKLE 130
           P+   VR +VL +E++          L GS    L+ L   +  E T+    L+
Sbjct: 54  PVPSRVR-AVLKVEVYDWDRGGKDDLL-GSAYIDLSDL---EPEETTELTLPLD 102

5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the fifth C2 repeat, C2E, and has a type-II topology. Length = 115

>gnl|CDD|176028 cd08382, C2_Smurf-like, C2 domain present in Smad ubiquitination-related factor (Smurf)-like proteins

 Score = 46.1 bits (110), Expect = 1e-06
 Identities = 27/135 (20%), Positives = 58/135 (42%), Gaps = 19/135 (14%)

Query: 20  DLEITIICAKHLKNVNWRNGGDL----KPYVVFYVDPAYRLATQSDDSGSTRPVWNERFT 75
            + +T++CA  L     +   DL     P+ V  VD   +  +      +  P WNE F 
Sbjct: 1   KVRLTVLCADGL----AKR--DLFRLPDPFAVITVD-GGQTHSTDVAKKTLDPKWNEHFD 53

Query: 76  LPITHSVRESVLTLEIF-HSKLSETPKPLVGSVKFPLAHLVDSDSSEPTQYVRKLEVLRP 134
           L +  S   S++T+++F   K  +  +  +G V+     ++    +      ++L++ + 
Sbjct: 54  LTVGPS---SIITIQVFDQKKFKKKDQGFLGCVRIRANAVLPLKDT----GYQRLDLRKL 106

Query: 135 SGRPQGKIRVKLVLN 149
                  +R K+V++
Sbjct: 107 KKSDNLSVRGKIVVS 121

A single C2 domain is found in Smurf proteins, C2-WW-HECT-domain E3s, which play an important role in the downregulation of the TGF-beta signaling pathway. Smurf proteins also regulate cell shape, motility, and polarity by degrading small guanosine triphosphatases (GTPases). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Members here have type-II topology. Length = 123

>gnl|CDD|175988 cd04021, C2_E3_ubiquitin_ligase, C2 domain present in E3 ubiquitin ligase

 Score = 44.2 bits (105), Expect = 7e-06
 Identities = 28/99 (28%), Positives = 43/99 (43%), Gaps = 14/99 (14%)

Query: 19  HDLEITIICAKHLKNVNWRNGGDLKPYVVFYVD--PAYRLATQSDDSGSTRPVWNERFTL 76
             L+IT+  AK LK+ +     D  PYV   VD  P  +         ++ P WNE FT+
Sbjct: 2   SQLQITVESAK-LKSNSKSFKPD--PYVEVTVDGQPPKKTEVSK---KTSNPKWNEHFTV 55

Query: 77  PITHSVRESVLTLEIF-HSKLSETPKPLVGSVKFPLAHL 114
            +T     S L  +++ H  L      L+G     L+ +
Sbjct: 56  LVTPQ---STLEFKVWSHHTLK--ADVLLGEASLDLSDI 89

E3 ubiquitin ligase is part of the ubiquitylation mechanism responsible for controlling surface expression of membrane proteins. The sequential action of several enzymes are involved: ubiquitin-activating enzyme E1, ubiquitin-conjugating enzyme E2, and ubiquitin-protein ligase E3 which is responsible for substrate recognition and promoting the transfer of ubiquitin to the target protein. E3 ubiquitin ligase is composed of an N-terminal C2 domain, 4 WW domains, and a HECTc domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Length = 125

>gnl|CDD|175981 cd04014, C2_PKC_epsilon, C2 domain in Protein Kinase C (PKC) epsilon

 Score = 44.2 bits (105), Expect = 9e-06
 Identities = 34/111 (30%), Positives = 42/111 (37%), Gaps = 15/111 (13%)

Query: 42  LKPYVVFYVDPAYRLATQSDDSGSTRPVWNERFTLPITHSVRE-SVLTLEIFHSKLSETP 100
           L PYV   VD    +   S    +  PVWNE F    T  V     L L +FH      P
Sbjct: 35  LDPYVSIDVD-DTHIGKTSTKPKTNSPVWNEEF----TTEVHNGRNLELTVFHDAAI-GP 88

Query: 101 KPLVGSVKFPLAHLVDSDSSEPTQYVRKLEVLRPSGRPQGKIRVKLVLNGR 151
              V +       L+   S     +V  LE       PQGK+ VK+ L G 
Sbjct: 89  DDFVANCTISFEDLIQRGSGSFDLWVD-LE-------PQGKLHVKIELKGS 131

A single C2 domain is found in PKC epsilon. The PKC family of serine/threonine kinases regulates apoptosis, proliferation, migration, motility, chemo-resistance, and differentiation. There are 3 groups: group 1 (alpha, betaI, beta II, gamma) which require phospholipids and calcium, group 2 (delta, epsilon, theta, eta) which do not require calcium for activation, and group 3 (xi, iota/lambda) which are atypical and can be activated in the absence of diacylglycerol and calcium. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Members here have a type-II topology. Length = 132

>gnl|CDD|227371 COG5038, COG5038, Ca2+-dependent lipid-binding protein, contains C2 domain [General function prediction only]

 Score = 43.2 bits (102), Expect = 1e-04
 Identities = 23/97 (23%), Positives = 45/97 (46%), Gaps = 9/97 (9%)

Query: 20   DLEITIICAKHLKNVNWRNGGDLKPYVVFYVD--PAYRLATQSDDSGSTRPVWNERFTLP 77
             L I +   ++L + +     D  P+V  +++    Y+         +  PVWNE FT+ 
Sbjct: 1041 YLTIMLRSGENLPSSDENGYSD--PFVKLFLNEKSVYKTKVVKK---TLNPVWNEEFTIE 1095

Query: 78   ITHSVRESVLTLEIFHSKLSETPKPLVGSVKFPLAHL 114
            + + V++ VLT+ +      E    L+G+ +  L+ L
Sbjct: 1096 VLNRVKD-VLTINVNDWDSGEKND-LLGTAEIDLSKL 1130

Length = 1227

>gnl|CDD|223021 PHA03247, PHA03247, large tegument protein UL36; Provisional

 Score = 41.1 bits (96), Expect = 6e-04
 Identities = 28/104 (26%), Positives = 32/104 (30%), Gaps = 29/104 (27%)

Query: 152  PLPPPSQDYQSVPDFGHYYYSAPPPPFPPPSRDYSYYPSYYTPQPPAPPRPLFSRASSYS 211
              P  S+  +S           PP     P            PQP APP P         
Sbjct: 2887 ARPAVSRSTESFA--------LPPDQPERP------------PQPQAPPPPQ-------- 2918

Query: 212  LPSGSLSVPSAPVDFSPSQDYKQPPLPPQPRASGYGVPSGSGPS 255
             P      P  P    P     QPPL P    +G G PSG+ P 
Sbjct: 2919 -PQPQPPPPPQPQPPPPPPPRPQPPLAPTTDPAGAGEPSGAVPQ 2961

Length = 3151

>gnl|CDD|223021 PHA03247, PHA03247, large tegument protein UL36; Provisional

 Score = 40.7 bits (95), Expect = 9e-04
 Identities = 34/134 (25%), Positives = 44/134 (32%), Gaps = 22/134 (16%)

Query: 174  PPPPFPP----PSRDYSYYPSYYTPQPP------------APPRPLFSRASSYSLPSGSL 217
            PPPP PP     + D S  P    P+P             APP+    RA       G  
Sbjct: 2551 PPPPLPPAAPPAAPDRSVPPPRPAPRPSEPAVTSRARRPDAPPQSARPRAPVD--DRGDP 2608

Query: 218  SVPSAPVDFSPSQDYKQPPLPPQPRASGYGVPSGSGPSAPVDYSPYDQKLQKQFGGLSLE 277
              P+ P    P   +   P PP P  +         P+ P    P D       G +S  
Sbjct: 2609 RGPAPPSP-LPPDTHAPDPPPPSPSPAANEPDPHPPPTVPPPERPRDDPAP---GRVSRP 2664

Query: 278  EEVNRKGKEKRAES 291
                R G+  +A S
Sbjct: 2665 RRARRLGRAAQASS 2678

Length = 3151

>gnl|CDD|175982 cd04015, C2_plant_PLD, C2 domain present in plant phospholipase D (PLD)

 Score = 38.8 bits (91), Expect = 0.001
 Identities = 32/124 (25%), Positives = 44/124 (35%), Gaps = 15/124 (12%)

Query: 27  CAKHLKNVNWRNGGDLKPYVVFYVDPAYRLATQSDDSGSTRPVWNERFTLPITHSVRESV 86
             K   +          PY    +  A R+A       S  PVWNE F +   H      
Sbjct: 43  TLKRPSSHRHVGKITSDPYATVDLAGA-RVARTRVIENSENPVWNESFHIYCAHYASHV- 100

Query: 87  LTLEIFHSKLSET-PKPLVGSVKFPLAHLVDSDSSEPTQYVRKLEVLRPSGRPQ---GKI 142
                F  K ++     L+G    P+  L+   S EP      L +L  +G+P     KI
Sbjct: 101 ----EFTVKDNDVVGAQLIGRAYIPVEDLL---SGEPV--EGWLPILDSNGKPPKPGAKI 151

Query: 143 RVKL 146
           RV L
Sbjct: 152 RVSL 155

PLD hydrolyzes terminal phosphodiester bonds in diester glycerophospholipids resulting in the degradation of phospholipids. In vitro PLD transfers phosphatidic acid to primary alcohols. In plants PLD plays a role in germination, seedling growth, phosphatidylinositol metabolism, and changes in phospholipid composition. There is a single Ca(2+)/phospholipid-binding C2 domain in PLD. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Length = 158

>gnl|CDD|236669 PRK10263, PRK10263, DNA translocase FtsK; Provisional

 Score = 40.5 bits (94), Expect = 0.001
 Identities = 31/135 (22%), Positives = 45/135 (33%), Gaps = 21/135 (15%)

Query: 110 PLAHLVDSDSSEPTQYVRKLEVLRPSGRPQGKIRVKLVLNGRPLPPPSQDYQSVPDFGHY 169
           P+  L+D    EP        V +P      + + +     +P+ P  Q           
Sbjct: 731 PMKALLDDGPHEPLFTPIVEPVQQPQQPVAPQQQYQQ--PQQPVAPQPQ----------- 777

Query: 170 YYSAPPPPFPPPSRDYSYYPSYYTPQPPAPPRPLFSRASSYSLPSGSLSVPSAPVDFSPS 229
            Y  P  P  P        P Y  PQ P  P+P + +      P      P  PV   P 
Sbjct: 778 -YQQPQQPVAPQ-------PQYQQPQQPVAPQPQYQQPQQPVAPQPQYQQPQQPVAPQPQ 829

Query: 230 QDYKQPPLPPQPRAS 244
               Q P+ PQP+ +
Sbjct: 830 YQQPQQPVAPQPQDT 844

Length = 1355

>gnl|CDD|176036 cd08390, C2A_Synaptotagmin-15-17, C2A domain first repeat present in Synaptotagmins 15 and 17

 Score = 38.0 bits (89), Expect = 0.001
 Identities = 29/120 (24%), Positives = 51/120 (42%), Gaps = 23/120 (19%)

Query: 21  LEITIICAKHL----KNVNWRNGGDLKPYVVFYVDPAYRLATQSDDSGST-RPVWNERFT 75
           L +++I A++L    K+V   +     P+V   + P  R + QS     T  P ++E F 
Sbjct: 16  LTVSLIKARNLPPRTKDVAHCD-----PFVKVCLLPDERRSLQSKVKRKTQNPNFDETFV 70

Query: 76  LPITHS-VRESVLTLEIFH----SKLSETPKPLVGSVKFPLAHLVDSDSSEPTQYVRKLE 130
             ++   ++   L L ++     S+       ++G V FPL    D D  +     R LE
Sbjct: 71  FQVSFKELQRRTLRLSVYDVDRFSRHC-----IIGHVLFPLK---DLDLVKGGVVWRDLE 122

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. It is thought to be involved in the trafficking and exocytosis of secretory vesicles in non-neuronal tissues and is Ca2+ independent. Human synaptotagmin 15 has 2 alternatively spliced forms that encode proteins with different C-termini. The larger, SYT15a, contains a N-terminal TM region, a putative fatty-acylation site, and 2 tandem C terminal C2 domains. The smaller, SYT15b, lacks the C-terminal portion of the second C2 domain. Unlike most other synaptotagmins it is nearly absent in the brain and rather is found in the heart, lungs, skeletal muscle, and testis. Synaptotagmin 17 is located in the brain, kidney, and prostate and is thought to be a peripheral membrane protein. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the first C2 repeat, C2A, and has a type-I topology. Length = 123

>gnl|CDD|218191 pfam04652, DUF605, Vta1 like

 Score = 39.3 bits (92), Expect = 0.001
 Identities = 21/100 (21%), Positives = 28/100 (28%), Gaps = 7/100 (7%)

Query: 152 PLPPPSQDYQSVPDFGHYYYSAPPPPFPPPSRDYSYYPSYYTPQPPAP-------PRPLF 204
               P +D            S+ P     PS          +  PPAP       P P  
Sbjct: 169 DNSFPGEDADPASASPSDPPSSSPGVPSFPSPPEDPSSPSDSSLPPAPSSFQSDTPPPSP 228

Query: 205 SRASSYSLPSGSLSVPSAPVDFSPSQDYKQPPLPPQPRAS 244
              ++ S P G  + P  PV   P     +P  P      
Sbjct: 229 ESPTNPSPPPGPAAPPPPPVQQVPPLSTAKPTPPSASATP 268

Vta1 (VPS20-associated protein 1) is a positive regulator of Vps4. Vps4 is an ATPase that is required in the multivesicular body (MVB) sorting pathway to dissociate the endosomal sorting complex required for transport (ESCRT). Vta1 promotes correct assembly of Vps4 and stimulates its ATPase activity through its conserved Vta1/SBP1/LIP5 region. Length = 315

>gnl|CDD|175975 cd00276, C2B_Synaptotagmin, C2 domain second repeat present in Synaptotagmin

 Score = 36.8 bits (86), Expect = 0.004
 Identities = 22/96 (22%), Positives = 41/96 (42%), Gaps = 7/96 (7%)

Query: 16  PITHDLEITIICAKHLKNVNWRNGGDLKPYV-VFYVDPAYRLATQSDDS--GSTRPVWNE 72
           P    L + ++ A++L   + +   D  PYV V  +    +L  +      G+  PV+NE
Sbjct: 11  PTAERLTVVVLKARNLPPSDGKGLSD--PYVKVSLLQGGKKLKKKKTSVKKGTLNPVFNE 68

Query: 73  RFTLPITH-SVRESVLTLEIFHSKLSETPKPLVGSV 107
            F+  +    + E  L + +   K S     ++G V
Sbjct: 69  AFSFDVPAEQLEEVSLVITVVD-KDSVGRNEVIGQV 103

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. There are several classes of Synaptotagmins. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-I topology. Length = 134

>gnl|CDD|220715 pfam10358, NT-C2, N-terminal C2 in EEIG1 and EHBP1 proteins

 Score = 36.9 bits (86), Expect = 0.004
 Identities = 18/87 (20%), Positives = 32/87 (36%), Gaps = 13/87 (14%)

Query: 69  VWNERFTLPIT-------HSVRESVLTLEIFHSKLSETPKPLVGSVKFPLAHLVDSDSSE 121
           VWNE F++P T             +LT  ++     +  K ++G     LA   +S    
Sbjct: 53  VWNEEFSIPCTLFVDKKGGKFEPKLLTFVVY-KVTKKGKKKVLGKADIDLAEYANSKEP- 110

Query: 122 PTQYVRKLEVLRPSGRPQGKIRVKLVL 148
                R L  L+   +    + + + L
Sbjct: 111 --TTRRLL--LKKCSKKNATLSITISL 133

This version of the C2 domain was initally identified in the vertebrate estrogen early-induced gene 1 (EEIG1), and its Drosophila ortholog required for uptake of dsRNA via the endocytotic machinery to induce RNAi silencing. It is also in C.elegans ortholog Sym-3 (SYnthetic lethal with Mec-3) and the mammalian protein EHBP1 (EH domain Binding Protein-1) that regulates endocytotic recycling and two plant proteins, RPG that regulates Rhizobium-directed polar growth and PMI1 (Plastid Movement Impaired 1) that is essential for intracellular movement of chloroplasts in response to blue light. Length = 142

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	308
cd04016	121	C2_Tollip C2 domain present in Toll-interacting pr	99.89
cd08681	118	C2_fungal_Inn1p-like C2 domain found in fungal Ing	99.86
cd04042	121	C2A_MCTP_PRT C2 domain first repeat found in Multi	99.86
cd08682	126	C2_Rab11-FIP_classI C2 domain found in Rab11-famil	99.85
cd04022	127	C2A_MCTP_PRT_plant C2 domain first repeat found in	99.85
cd04051	125	C2_SRC2_like C2 domain present in Soybean genes Re	99.85
cd04019	150	C2C_MCTP_PRT_plant C2 domain third repeat found in	99.84
cd04044	124	C2A_Tricalbin-like C2 domain first repeat present	99.83
cd08401	121	C2A_RasA2_RasA3 C2 domain first repeat present in	99.82
cd08379	126	C2D_MCTP_PRT_plant C2 domain fourth repeat found i	99.82
cd04015	158	C2_plant_PLD C2 domain present in plant phospholip	99.82
cd08375	136	C2_Intersectin C2 domain present in Intersectin. A	99.82
cd08378	121	C2B_MCTP_PRT_plant C2 domain second repeat found i	99.82
cd04033	133	C2_NEDD4_NEDD4L C2 domain present in the Human neu	99.81
cd08678	126	C2_C21orf25-like C2 domain found in the Human chro	99.81
cd04024	128	C2A_Synaptotagmin-like C2 domain first repeat pres	99.81
cd08400	126	C2_Ras_p21A1 C2 domain present in RAS p21 protein	99.81
cd08376	116	C2B_MCTP_PRT C2 domain second repeat found in Mult	99.81
cd04025	123	C2B_RasA1_RasA4 C2 domain second repeat present in	99.81
cd04036	119	C2_cPLA2 C2 domain present in cytosolic PhosphoLip	99.81
cd08377	119	C2C_MCTP_PRT C2 domain third repeat found in Multi	99.81
cd04054	121	C2A_Rasal1_RasA4 C2 domain first repeat present in	99.8
cd04046	126	C2_Calpain C2 domain present in Calpain proteins.	99.8
cd08382	123	C2_Smurf-like C2 domain present in Smad ubiquitina	99.8
cd08391	121	C2A_C2C_Synaptotagmin_like C2 domain first and thi	99.79
cd04014	132	C2_PKC_epsilon C2 domain in Protein Kinase C (PKC)	99.79
cd04043	126	C2_Munc13_fungal C2 domain in Munc13 (mammalian un	99.78
cd08395	120	C2C_Munc13 C2 domain third repeat in Munc13 (mamma	99.78
cd08381	122	C2B_PI3K_class_II C2 domain second repeat present	99.77
cd08690	155	C2_Freud-1 C2 domain found in 5' repressor element	99.77
cd08677	118	C2A_Synaptotagmin-13 C2 domain. Synaptotagmin is a	99.77
cd04017	135	C2D_Ferlin C2 domain fourth repeat in Ferlin. Ferl	99.77
KOG1030	168	consensus Predicted Ca2+-dependent phospholipid-bi	99.77
cd08392	128	C2A_SLP-3 C2 domain first repeat present in Synapt	99.77
cd08373	127	C2A_Ferlin C2 domain first repeat in Ferlin. Ferli	99.77
cd04028	146	C2B_RIM1alpha C2 domain second repeat contained in	99.77
cd04039	108	C2_PSD C2 domain present in Phosphatidylserine dec	99.76
cd04010	148	C2B_RasA3 C2 domain second repeat present in RAS p	99.76
cd04029	125	C2A_SLP-4_5 C2 domain first repeat present in Syna	99.76
cd04021	125	C2_E3_ubiquitin_ligase C2 domain present in E3 ubi	99.76
cd04040	115	C2D_Tricalbin-like C2 domain fourth repeat present	99.76
cd04050	105	C2B_Synaptotagmin-like C2 domain second repeat pre	99.75
cd08688	110	C2_KIAA0528-like C2 domain found in the Human KIAA	99.75
cd08685	119	C2_RGS-like C2 domain of the Regulator Of G-Protei	99.75
cd08387	124	C2A_Synaptotagmin-8 C2A domain first repeat presen	99.75
cd04011	111	C2B_Ferlin C2 domain second repeat in Ferlin. Ferl	99.75
cd04027	127	C2B_Munc13 C2 domain second repeat in Munc13 (mamm	99.74
cd08680	124	C2_Kibra C2 domain found in Human protein Kibra. K	99.74
cd08394	127	C2A_Munc13 C2 domain first repeat in Munc13 (mamma	99.74
cd08393	125	C2A_SLP-1_2 C2 domain first repeat present in Syna	99.74
cd08385	124	C2A_Synaptotagmin-1-5-6-9-10 C2A domain first repe	99.73
cd04041	111	C2A_fungal C2 domain first repeat; fungal group. C	99.73
cd04049	124	C2_putative_Elicitor-responsive_gene C2 domain pre	99.73
cd04030	127	C2C_KIAA1228 C2 domain third repeat present in unc	99.72
cd04045	120	C2C_Tricalbin-like C2 domain third repeat present	99.72
cd08691	137	C2_NEDL1-like C2 domain present in NEDL1 (NEDD4-li	99.72
cd08388	128	C2A_Synaptotagmin-4-11 C2A domain first repeat pre	99.72
cd00275	128	C2_PLC_like C2 domain present in Phosphoinositide-	99.72
cd04031	125	C2A_RIM1alpha C2 domain first repeat contained in	99.72
cd08386	125	C2A_Synaptotagmin-7 C2A domain first repeat presen	99.71
cd08521	123	C2A_SLP C2 domain first repeat present in Synaptot	99.71
cd04013	146	C2_SynGAP_like C2 domain present in Ras GTPase act	99.71
cd08390	123	C2A_Synaptotagmin-15-17 C2A domain first repeat pr	99.69
cd04052	111	C2B_Tricalbin-like C2 domain second repeat present	99.69
cd04018	151	C2C_Ferlin C2 domain third repeat in Ferlin. Ferli	99.68
cd08389	124	C2A_Synaptotagmin-14_16 C2A domain first repeat pr	99.68
cd04032	127	C2_Perforin C2 domain of Perforin. Perforin contai	99.67
PLN03008	868	Phospholipase D delta	99.67
cd04020	162	C2B_SLP_1-2-3-4 C2 domain second repeat present in	99.67
cd08383	117	C2A_RasGAP C2 domain (first repeat) of Ras GTPase	99.66
cd08675	137	C2B_RasGAP C2 domain second repeat of Ras GTPase a	99.66
cd04009	133	C2B_Munc13-like C2 domain second repeat in Munc13	99.66
cd08676	153	C2A_Munc13-like C2 domain first repeat in Munc13 (	99.66
cd08384	133	C2B_Rabphilin_Doc2 C2 domain second repeat present	99.65
cd04038	145	C2_ArfGAP C2 domain present in Arf GTPase Activati	99.65
cd04026	131	C2_PKC_alpha_gamma C2 domain in Protein Kinase C (	99.65
cd08404	136	C2B_Synaptotagmin-4 C2 domain second repeat presen	99.64
KOG0696	683	consensus Serine/threonine protein kinase [Signal	99.63
cd04037	124	C2E_Ferlin C2 domain fifth repeat in Ferlin. Ferli	99.63
cd08407	138	C2B_Synaptotagmin-13 C2 domain second repeat prese	99.62
cd08405	136	C2B_Synaptotagmin-7 C2 domain second repeat presen	99.62
cd08406	136	C2B_Synaptotagmin-12 C2 domain second repeat prese	99.61
cd08402	136	C2B_Synaptotagmin-1 C2 domain second repeat presen	99.61
cd08408	138	C2B_Synaptotagmin-14_16 C2 domain second repeat pr	99.61
cd08686	118	C2_ABR C2 domain in the Active BCR (Breakpoint clu	99.61
cd00276	134	C2B_Synaptotagmin C2 domain second repeat present	99.61
cd08403	134	C2B_Synaptotagmin-3-5-6-9-10 C2 domain second repe	99.61
cd08409	137	C2B_Synaptotagmin-15 C2 domain second repeat prese	99.6
cd04048	120	C2A_Copine C2 domain first repeat in Copine. There	99.6
cd08410	135	C2B_Synaptotagmin-17 C2 domain second repeat prese	99.6
cd08692	135	C2B_Tac2-N C2 domain second repeat found in Tac2-N	99.59
PLN03200	2102	cellulose synthase-interactive protein; Provisiona	99.58
cd04035	123	C2A_Rabphilin_Doc2 C2 domain first repeat present	99.58
KOG1028	421	consensus Ca2+-dependent phospholipid-binding prot	99.55
cd04047	110	C2B_Copine C2 domain second repeat in Copine. Ther	99.51
PF00168	85	C2: C2 domain; InterPro: IPR000008 The C2 domain i	99.48
PLN02270	808	phospholipase D alpha	99.45
KOG1011	1283	consensus Neurotransmitter release regulator, UNC-	99.43
KOG2059	800	consensus Ras GTPase-activating protein [Signal tr	99.37
smart00239	101	C2 Protein kinase C conserved region 2 (CalB). Ca2	99.37
cd00030	102	C2 C2 domain. The C2 domain was first identified i	99.37
PLN02223	537	phosphoinositide phospholipase C	99.35
PLN02952	599	phosphoinositide phospholipase C	99.31
cd08374	133	C2F_Ferlin C2 domain sixth repeat in Ferlin. Ferli	99.28
cd08689	109	C2_fungal_Pkc1p C2 domain found in protein kinase	99.25
KOG0169	746	consensus Phosphoinositide-specific phospholipase	99.24
PLN02230	598	phosphoinositide phospholipase C 4	99.22
PLN02222	581	phosphoinositide phospholipase C 2	99.22
PLN02228	567	Phosphoinositide phospholipase C	99.19
COG5038	1227	Ca2+-dependent lipid-binding protein, contains C2	99.19
COG5038	1227	Ca2+-dependent lipid-binding protein, contains C2	99.14
KOG1028	421	consensus Ca2+-dependent phospholipid-binding prot	99.09
PLN02352	758	phospholipase D epsilon	99.06
KOG1264	1267	consensus Phospholipase C [Lipid transport and met	99.0
KOG1328	1103	consensus Synaptic vesicle protein BAIAP3, involve	98.97
KOG1031	1169	consensus Predicted Ca2+-dependent phospholipid-bi	98.87
cd08683	143	C2_C2cd3 C2 domain found in C2 calcium-dependent d	98.71
KOG3837	523	consensus Uncharacterized conserved protein, conta	98.62
KOG1328	1103	consensus Synaptic vesicle protein BAIAP3, involve	98.53
KOG2059	800	consensus Ras GTPase-activating protein [Signal tr	98.49
KOG1011	1283	consensus Neurotransmitter release regulator, UNC-	98.33
KOG0905	1639	consensus Phosphoinositide 3-kinase [Signal transd	98.28
KOG1013	362	consensus Synaptic vesicle protein rabphilin-3A [I	98.14
cd08684	103	C2A_Tac2-N C2 domain first repeat found in Tac2-N	97.94
KOG1013	362	consensus Synaptic vesicle protein rabphilin-3A [I	97.85
KOG2060	405	consensus Rab3 effector RIM1 and related proteins,	97.83
KOG1265	1189	consensus Phospholipase C [Lipid transport and met	97.81
PLN02964	644	phosphatidylserine decarboxylase	97.53
KOG1326	1105	consensus Membrane-associated protein FER-1 and re	97.53
PF10358	143	NT-C2: N-terminal C2 in EEIG1 and EHBP1 proteins;	97.52
cd08687	98	C2_PKN-like C2 domain in Protein kinase C-like (PK	97.34
PF12416	340	DUF3668: Cep120 protein; InterPro: IPR022136 This	97.31
KOG1452	442	consensus Predicted Rho GTPase-activating protein	97.26
PF11618	107	DUF3250: Protein of unknown function (DUF3250); In	96.91
PF15627	156	CEP76-C2: CEP76 C2 domain	96.88
KOG1326	1105	consensus Membrane-associated protein FER-1 and re	96.76
cd08398	158	C2_PI3K_class_I_alpha C2 domain present in class I	96.73
KOG1327	529	consensus Copine [Signal transduction mechanisms]	96.53
cd08693	173	C2_PI3K_class_I_beta_delta C2 domain present in cl	96.4
cd08380	156	C2_PI3K_like C2 domain present in phosphatidylinos	96.21
cd08694	196	C2_Dock-A C2 domains found in Dedicator Of CytoKin	96.13
cd08695	189	C2_Dock-B C2 domains found in Dedicator Of CytoKin	96.05
cd08399	178	C2_PI3K_class_I_gamma C2 domain present in class I	95.76
cd08397	159	C2_PI3K_class_III C2 domain present in class III p	95.44
KOG1924	1102	consensus RhoA GTPase effector DIA/Diaphanous [Sig	95.26
cd04012	171	C2A_PI3K_class_II C2 domain first repeat present i	95.02
PF14429	184	DOCK-C2: C2 domain in Dock180 and Zizimin proteins	94.92
KOG1924	1102	consensus RhoA GTPase effector DIA/Diaphanous [Sig	94.75
PF00792	142	PI3K_C2: Phosphoinositide 3-kinase C2; InterPro: I	93.82
PF15625	168	CC2D2AN-C2: CC2D2A N-terminal C2 domain	93.14
KOG1327	529	consensus Copine [Signal transduction mechanisms]	92.37
cd08679	178	C2_DOCK180_related C2 domains found in Dedicator O	91.95
smart00142	100	PI3K_C2 Phosphoinositide 3-kinase, region postulat	91.82
KOG1329	887	consensus Phospholipase D1 [Lipid transport and me	91.73
cd08696	179	C2_Dock-C C2 domains found in Dedicator Of CytoKin	90.98
cd08697	185	C2_Dock-D C2 domains found in Dedicator Of CytoKin	90.77
PTZ00447	508	apical membrane antigen 1-like protein; Provisiona	88.93
PF14924	112	DUF4497: Protein of unknown function (DUF4497)	85.99
KOG0694	694	consensus Serine/threonine protein kinase [Signal	85.87
KOG3543	1218	consensus Ca2+-dependent activator protein [Signal	84.73
PF14186	147	Aida_C2: Cytoskeletal adhesion; PDB: 2QZQ_A 2QZ5_A	84.13
PF09849	247	DUF2076: Uncharacterized protein conserved in bact	80.59

>cd04016 C2_Tollip C2 domain present in Toll-interacting protein (Tollip)

Probab=99.89  E-value=4.7e-22  Score=162.39  Aligned_cols=118  Identities=19%  Similarity=0.315  Sum_probs=98.9

Q ss_pred             cEEEEEEEEeecCCCCCCCCCCCCCcEEEEEEcCCceEEEEeecCCCCCCccccEEEEeeeCCCCCceEEEEEEeccCCC
Q 021710           19 HDLEITIICAKHLKNVNWRNGGDLKPYVVFYVDPAYRLATQSDDSGSTRPVWNERFTLPITHSVRESVLTLEIFHSKLSE   98 (308)
Q Consensus        19 ~~L~VtIisAk~L~~~~~~~~~~~dPYv~v~l~~~~k~kT~v~k~gt~nP~WnE~f~f~l~~~~~~~~L~l~V~d~~~~~   98 (308)
                      +.|+|+|++|++|++.+ +++  +||||+++++. .+++|+++++++.||+|||+|.|.+...  ...|.|+|||++ ..
T Consensus         2 g~L~v~v~~Ak~l~~~~-~g~--sDPYv~i~lg~-~~~kT~v~~~~~~nP~WNe~F~f~v~~~--~~~l~~~V~d~d-~~   74 (121)
T cd04016           2 GRLSITVVQAKLVKNYG-LTR--MDPYCRIRVGH-AVYETPTAYNGAKNPRWNKTIQCTLPEG--VDSIYIEIFDER-AF   74 (121)
T ss_pred             cEEEEEEEEccCCCcCC-CCC--CCceEEEEECC-EEEEeEEccCCCCCCccCeEEEEEecCC--CcEEEEEEEeCC-CC
Confidence            68999999999999887 554  99999999986 7889999987689999999999999763  467999999999 46


Q ss_pred             CCCceeeeEEEeCcc-cccCCCCCCCceeEEEEEeCCCCC-CccEEEEEEEE
Q 021710           99 TPKPLVGSVKFPLAH-LVDSDSSEPTQYVRKLEVLRPSGR-PQGKIRVKLVL  148 (308)
Q Consensus        99 ~~d~lLG~~~ipL~~-L~~~~~~~~~~~~~~~~L~~~sg~-~~G~L~v~v~~  148 (308)
                      ++|++||++.|+|.+ +..+.     ....||+|...+++ ..|+|+|+++|
T Consensus        75 ~~dd~iG~~~i~l~~~~~~g~-----~~~~W~~L~~~~~~~~~g~i~l~l~y  121 (121)
T cd04016          75 TMDERIAWTHITIPESVFNGE-----TLDDWYSLSGKQGEDKEGMINLVFSY  121 (121)
T ss_pred             cCCceEEEEEEECchhccCCC-----CccccEeCcCccCCCCceEEEEEEeC
Confidence            789999999999964 55432     24699999875544 57999999975

Tollip is a part of the Interleukin-1 receptor (IL-1R) signaling pathway. Tollip is proposed to link serine/threonine kinase IRAK to IL-1Rs as well as inhibiting phosphorylation of IRAK. There is a single C2 domain present in Tollip. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice varian

>cd08681 C2_fungal_Inn1p-like C2 domain found in fungal Ingression 1 (Inn1) proteins

Probab=99.86  E-value=7.6e-21  Score=153.60  Aligned_cols=118  Identities=21%  Similarity=0.419  Sum_probs=99.9

Q ss_pred             cEEEEEEEEeecCCCCCCCCCCCCCcEEEEEEcCCceEEEEeecCCCCCCccccEEEEeeeCCCCCceEEEEEEeccCCC
Q 021710           19 HDLEITIICAKHLKNVNWRNGGDLKPYVVFYVDPAYRLATQSDDSGSTRPVWNERFTLPITHSVRESVLTLEIFHSKLSE   98 (308)
Q Consensus        19 ~~L~VtIisAk~L~~~~~~~~~~~dPYv~v~l~~~~k~kT~v~k~gt~nP~WnE~f~f~l~~~~~~~~L~l~V~d~~~~~   98 (308)
                      +.|+|+|++|++|++.+..+.  +||||++++.. .+.+|+++++++.||+|||+|.|.+... ....|.|+|||++. .
T Consensus         1 g~L~V~v~~A~~L~~~~~~~~--~dpyv~v~~~~-~~~kT~~~~~~~~nP~Wne~f~f~v~~~-~~~~l~i~v~d~~~-~   75 (118)
T cd08681           1 GTLVVVVLKARNLPNKRKLDK--QDPYCVLRIGG-VTKKTKTDFRGGQHPEWDEELRFEITED-KKPILKVAVFDDDK-R   75 (118)
T ss_pred             CEEEEEEEEccCCCCCCcCCC--CCceEEEEECC-CccccccccCCCCCCccCceEEEEecCC-CCCEEEEEEEeCCC-C
Confidence            579999999999999887764  99999999986 7889998866578999999999999864 45789999999883 3


Q ss_pred             CCCceeeeEEEeCcccccCCCCCCCceeEEEEEeCCCCCCccEEEEEEEE
Q 021710           99 TPKPLVGSVKFPLAHLVDSDSSEPTQYVRKLEVLRPSGRPQGKIRVKLVL  148 (308)
Q Consensus        99 ~~d~lLG~~~ipL~~L~~~~~~~~~~~~~~~~L~~~sg~~~G~L~v~v~~  148 (308)
                       .+++||++.|+|+++.....     ...|++|.+ +++..|+|+|+++|
T Consensus        76 -~~~~iG~~~~~l~~~~~~~~-----~~~w~~L~~-~~~~~G~i~l~l~f  118 (118)
T cd08681          76 -KPDLIGDTEVDLSPALKEGE-----FDDWYELTL-KGRYAGEVYLELTF  118 (118)
T ss_pred             -CCcceEEEEEecHHHhhcCC-----CCCcEEecc-CCcEeeEEEEEEEC
Confidence             48999999999999876432     258999975 56789999999986

Saccharomyces cerevisiae Inn1 associates with the contractile actomyosin ring at the end of mitosis and is needed for cytokinesis. The C2 domain of Inn1, located at the N-terminus, is required for ingression of the plasma membrane. The C-terminus is relatively unstructured and contains eight PXXP motifs that are thought to mediate interaction of Inn1 with other proteins with SH3 domains in the cytokinesis proteins Hof1 (an F-BAR protein) and Cyk3 (whose overexpression can restore primary septum formation in Inn1Delta cells) as well as recruiting Inn1 to the bud-neck by binding to Cyk3. Inn1 and Cyk3 appear to cooperate in activating chitin synthase Chs2 for primary septum formation, which allows coordination of actomyosin ring contraction with ingression of the cleavage furrow. It is thought that the C2 domain of Inn1 helps to preserve the link between the actomyosin ring and the plasma membrane, contr

>cd04042 C2A_MCTP_PRT C2 domain first repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP)

Probab=99.86  E-value=1.4e-20  Score=153.07  Aligned_cols=120  Identities=23%  Similarity=0.348  Sum_probs=102.8

Q ss_pred             EEEEEEEEeecCCCCCCCCCCCCCcEEEEEEcCCceEEEEeecCCCCCCccccEEEEeeeCCCCCceEEEEEEeccCCCC
Q 021710           20 DLEITIICAKHLKNVNWRNGGDLKPYVVFYVDPAYRLATQSDDSGSTRPVWNERFTLPITHSVRESVLTLEIFHSKLSET   99 (308)
Q Consensus        20 ~L~VtIisAk~L~~~~~~~~~~~dPYv~v~l~~~~k~kT~v~k~gt~nP~WnE~f~f~l~~~~~~~~L~l~V~d~~~~~~   99 (308)
                      +|+|+|++|++|+..+..+.  +||||++.+....+.+|+++++ +.||+|||+|.|.+..  ....|.|+|||++. ..
T Consensus         1 ~L~v~v~~a~~L~~~d~~g~--~Dpyv~v~~~~~~~~kT~~~~~-t~nP~Wne~f~f~v~~--~~~~l~~~v~D~d~-~~   74 (121)
T cd04042           1 QLDIHLKEGRNLAARDRGGT--SDPYVKFKYGGKTVYKSKTIYK-NLNPVWDEKFTLPIED--VTQPLYIKVFDYDR-GL   74 (121)
T ss_pred             CeEEEEEEeeCCCCcCCCCC--CCCeEEEEECCEEEEEeeeccC-CCCCccceeEEEEecC--CCCeEEEEEEeCCC-CC
Confidence            48999999999999887764  9999999998757889999998 8999999999999875  25789999999983 56


Q ss_pred             CCceeeeEEEeCcccccCCCCCCCceeEEEEEeCCCC-CCccEEEEEEEEcc
Q 021710          100 PKPLVGSVKFPLAHLVDSDSSEPTQYVRKLEVLRPSG-RPQGKIRVKLVLNG  150 (308)
Q Consensus       100 ~d~lLG~~~ipL~~L~~~~~~~~~~~~~~~~L~~~sg-~~~G~L~v~v~~~~  150 (308)
                      ++++||++.|+|.++..+.     ....|++|.+..+ +..|+|+|+++|.+
T Consensus        75 ~~~~iG~~~~~l~~l~~~~-----~~~~~~~L~~~~~~~~~G~l~l~~~~~~  121 (121)
T cd04042          75 TDDFMGSAFVDLSTLELNK-----PTEVKLKLEDPNSDEDLGYISLVVTLTP  121 (121)
T ss_pred             CCcceEEEEEEHHHcCCCC-----CeEEEEECCCCCCccCceEEEEEEEECC
Confidence            8999999999999998654     3358999986654 67899999999863

MCTPs are involved in Ca2+ signaling at the membrane. MCTP is composed of a variable N-terminal sequence, three C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular protein

>cd08682 C2_Rab11-FIP_classI C2 domain found in Rab11-family interacting proteins (FIP) class I

Probab=99.85  E-value=9.7e-21  Score=155.11  Aligned_cols=119  Identities=20%  Similarity=0.386  Sum_probs=97.6

Q ss_pred             EEEEEEEeecCCCCCCCCCCCCCcEEEEEEcCCceEEEEeecCCCCCCccccEEEEeeeCC----CCCceEEEEEEeccC
Q 021710           21 LEITIICAKHLKNVNWRNGGDLKPYVVFYVDPAYRLATQSDDSGSTRPVWNERFTLPITHS----VRESVLTLEIFHSKL   96 (308)
Q Consensus        21 L~VtIisAk~L~~~~~~~~~~~dPYv~v~l~~~~k~kT~v~k~gt~nP~WnE~f~f~l~~~----~~~~~L~l~V~d~~~   96 (308)
                      |+|+|++|+||...+..+  .+||||++.+.. .+.+|+++++ +.||+|||+|.|.+...    .....|.|+|||++ 
T Consensus         1 ~~V~V~~A~~L~~~d~~g--~~dpYv~v~l~~-~~~kT~v~~~-t~nP~Wne~f~F~v~~~~~~~~~~~~l~~~v~d~~-   75 (126)
T cd08682           1 VQVTVLQARGLLCKGKSG--TNDAYVIIQLGK-EKYSTSVKEK-TTSPVWKEECSFELPGLLSGNGNRATLQLTVMHRN-   75 (126)
T ss_pred             CEEEEEECcCCcCCCCCc--CCCceEEEEECC-eeeeeeeecC-CCCCEeCceEEEEecCcccCCCcCCEEEEEEEEcc-
Confidence            589999999999887765  499999999985 7889999998 89999999999998762    24678999999998 


Q ss_pred             CCCCCceeeeEEEeCcccccCCCCCCCceeEEEEEeCCCC---CCccEEEEEEE
Q 021710           97 SETPKPLVGSVKFPLAHLVDSDSSEPTQYVRKLEVLRPSG---RPQGKIRVKLV  147 (308)
Q Consensus        97 ~~~~d~lLG~~~ipL~~L~~~~~~~~~~~~~~~~L~~~sg---~~~G~L~v~v~  147 (308)
                      ...+|++||++.|+|+++......   ....||+|....+   +..|+|+|+|.
T Consensus        76 ~~~~d~~iG~~~i~l~~l~~~~~~---~~~~W~~L~~~~~~~~~~~Gei~l~~~  126 (126)
T cd08682          76 LLGLDKFLGQVSIPLNDLDEDKGR---RRTRWFKLESKPGKDDKERGEIEVDIQ  126 (126)
T ss_pred             ccCCCceeEEEEEEHHHhhccCCC---cccEEEECcCCCCCCccccceEEEEeC
Confidence            356799999999999999743222   3468999975433   45799999873

Rab GTPases recruit various effector proteins to organelles and vesicles. Rab11-family interacting proteins (FIPs) are involved in mediating the role of Rab11. FIPs can be divided into three classes: class I FIPs (Rip11a, Rip11b, RCP, and FIP2) which contain a C2 domain after N-terminus of the protein, class II FIPs (FIP3 and FIP4) which contain two EF-hands and a proline rich region, and class III FIPs (FIP1) which exhibits no homology to known protein domains. All FIP proteins contain a highly conserved, 20-amino acid motif at the C-terminus of the protein, known as Rab11/25 binding domain (RBD). Class I FIPs are thought to bind to endocytic membranes via their C2 domain, which interacts directly with phospholipids. Class II FIPs do not have any membrane binding domains leaving much to speculate about the mechanism involving FIP3 and FIP4 interactions with endocytic membranes. The member

>cd04022 C2A_MCTP_PRT_plant C2 domain first repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset

Probab=99.85  E-value=2.1e-20  Score=153.38  Aligned_cols=122  Identities=18%  Similarity=0.376  Sum_probs=101.3

Q ss_pred             EEEEEEEEeecCCCCCCCCCCCCCcEEEEEEcCCceEEEEeecCCCCCCccccEEEEeeeCC--CCCceEEEEEEeccCC
Q 021710           20 DLEITIICAKHLKNVNWRNGGDLKPYVVFYVDPAYRLATQSDDSGSTRPVWNERFTLPITHS--VRESVLTLEIFHSKLS   97 (308)
Q Consensus        20 ~L~VtIisAk~L~~~~~~~~~~~dPYv~v~l~~~~k~kT~v~k~gt~nP~WnE~f~f~l~~~--~~~~~L~l~V~d~~~~   97 (308)
                      .|+|+|++|++|...+..+  .+||||++.+.. .+.+|+++++ +.||+|||+|.|.+...  +.+..|.|+|||++. 
T Consensus         1 ~L~V~vi~A~~L~~~d~~g--~~dpyv~v~~~~-~~~rT~v~~~-t~nP~Wne~f~f~~~~~~~~~~~~l~~~V~d~~~-   75 (127)
T cd04022           1 KLVVEVVDAQDLMPKDGQG--SSSAYVELDFDG-QKKRTRTKPK-DLNPVWNEKLVFNVSDPSRLSNLVLEVYVYNDRR-   75 (127)
T ss_pred             CeEEEEEEeeCCCCCCCCC--CcCcEEEEEECC-EEecceeEcC-CCCCccceEEEEEccCHHHccCCeEEEEEeeCCC-
Confidence            4899999999999888765  499999999986 7889999988 89999999999998753  235689999999873 


Q ss_pred             CC-CCceeeeEEEeCcccccCCCCCCCceeEEEEEeCC--CCCCccEEEEEEEEcc
Q 021710           98 ET-PKPLVGSVKFPLAHLVDSDSSEPTQYVRKLEVLRP--SGRPQGKIRVKLVLNG  150 (308)
Q Consensus        98 ~~-~d~lLG~~~ipL~~L~~~~~~~~~~~~~~~~L~~~--sg~~~G~L~v~v~~~~  150 (308)
                      .. .++|||++.|+|+++.....    ....||+|.++  .++.+|+|+|++.+++
T Consensus        76 ~~~~d~~lG~v~i~l~~l~~~~~----~~~~w~~L~~~~~~~~~~G~l~l~~~~~~  127 (127)
T cd04022          76 SGRRRSFLGRVRISGTSFVPPSE----AVVQRYPLEKRGLFSRVRGEIGLKVYITD  127 (127)
T ss_pred             CcCCCCeeeEEEEcHHHcCCCCC----ccceEeEeeeCCCCCCccEEEEEEEEEcC
Confidence            44 78999999999999984222    34699999865  3467999999999864

MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates

>cd04051 C2_SRC2_like C2 domain present in Soybean genes Regulated by Cold 2 (SRC2)-like proteins

Probab=99.85  E-value=1.4e-20  Score=153.62  Aligned_cols=122  Identities=36%  Similarity=0.638  Sum_probs=102.9

Q ss_pred             EEEEEEEEeecCCCCCCCCCCCCCcEEEEEEcCCceEEEEeecCCCCCCccccEEEEeeeCCC---CCceEEEEEEeccC
Q 021710           20 DLEITIICAKHLKNVNWRNGGDLKPYVVFYVDPAYRLATQSDDSGSTRPVWNERFTLPITHSV---RESVLTLEIFHSKL   96 (308)
Q Consensus        20 ~L~VtIisAk~L~~~~~~~~~~~dPYv~v~l~~~~k~kT~v~k~gt~nP~WnE~f~f~l~~~~---~~~~L~l~V~d~~~   96 (308)
                      +|+|+|++|++|+..+..+.  +||||++++....+.+|+++++++.||.|||+|.|.+....   ....|.|+|||++.
T Consensus         1 ~L~V~V~sA~~L~~~~~~~~--~dpYv~v~~~~~~~~~T~~~~~~~~~P~Wne~f~f~v~~~~~~~~~~~l~~~v~d~~~   78 (125)
T cd04051           1 TLEITIISAEDLKNVNLFGK--MKVYAVVWIDPSHKQSTPVDRDGGTNPTWNETLRFPLDERLLQQGRLALTIEVYCERP   78 (125)
T ss_pred             CEEEEEEEcccCCCCCcccC--CceEEEEEECCCcccccccccCCCCCCCCCCEEEEEcChHhcccCccEEEEEEEECCC
Confidence            48999999999999887654  99999999987678899998766899999999999997641   26789999999883


Q ss_pred             CCCCCceeeeEEEeCcccccCCCCCCCceeEEEEEeCCCCCCccEEEE
Q 021710           97 SETPKPLVGSVKFPLAHLVDSDSSEPTQYVRKLEVLRPSGRPQGKIRV  144 (308)
Q Consensus        97 ~~~~d~lLG~~~ipL~~L~~~~~~~~~~~~~~~~L~~~sg~~~G~L~v  144 (308)
                       ...+++||++.|+|.++.............||+|++++|+.+|.|+|
T Consensus        79 -~~~~~~lG~~~i~l~~l~~~~~~~~~~~~~~~~l~~~~g~~~G~~~~  125 (125)
T cd04051          79 -SLGDKLIGEVRVPLKDLLDGASPAGELRFLSYQLRRPSGKPQGVLNF  125 (125)
T ss_pred             -CCCCCcEEEEEEEHHHhhcccCCCCcceeEEEEeECCCCCcCeEEeC
Confidence             46789999999999999876543222457899999999999999975

SRC2 production is a response to pathogen infiltration. The initial response of increased Ca2+ concentrations are coupled to downstream signal transduction pathways via calcium binding proteins. SRC2 contains a single C2 domain which localizes to the plasma membrane and is involved in Ca2+ dependent protein binding. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such

>cd04019 C2C_MCTP_PRT_plant C2 domain third repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset

Probab=99.84  E-value=4.4e-20  Score=156.24  Aligned_cols=126  Identities=21%  Similarity=0.287  Sum_probs=104.0

Q ss_pred             EEEEEEEEeecCCCCCCCCCCCCCcEEEEEEcCCceEEEEeecCCCCCCccccEEEEeeeCCCCCceEEEEEEeccCCCC
Q 021710           20 DLEITIICAKHLKNVNWRNGGDLKPYVVFYVDPAYRLATQSDDSGSTRPVWNERFTLPITHSVRESVLTLEIFHSKLSET   99 (308)
Q Consensus        20 ~L~VtIisAk~L~~~~~~~~~~~dPYv~v~l~~~~k~kT~v~k~gt~nP~WnE~f~f~l~~~~~~~~L~l~V~d~~~~~~   99 (308)
                      .|+|+|++|++|...+..+.  +||||++.++. .+.+|+++++++.||+|||+|.|.+... ....|.|+|||++. ..
T Consensus         1 ~L~V~Vi~A~~L~~~d~~g~--sDPYV~v~l~~-~~~kTk~~~~~t~nP~WNE~F~f~v~~~-~~~~l~v~V~d~~~-~~   75 (150)
T cd04019           1 YLRVTVIEAQDLVPSDKNRV--PEVFVKAQLGN-QVLRTRPSQTRNGNPSWNEELMFVAAEP-FEDHLILSVEDRVG-PN   75 (150)
T ss_pred             CEEEEEEEeECCCCCCCCCC--CCeEEEEEECC-EEeeeEeccCCCCCCcccCcEEEEecCc-cCCeEEEEEEEecC-CC
Confidence            38999999999999888764  99999999987 8899999977469999999999998753 34689999999883 46


Q ss_pred             CCceeeeEEEeCcccccCCCCCCCceeEEEEEeCCCC--------CCccEEEEEEEEccC
Q 021710          100 PKPLVGSVKFPLAHLVDSDSSEPTQYVRKLEVLRPSG--------RPQGKIRVKLVLNGR  151 (308)
Q Consensus       100 ~d~lLG~~~ipL~~L~~~~~~~~~~~~~~~~L~~~sg--------~~~G~L~v~v~~~~~  151 (308)
                      ++++||++.|+|+++....... .....||+|.+..+        +..|+|+|+|.|...
T Consensus        76 ~dd~lG~v~i~L~~l~~~~~~~-~~~~~W~~L~~~~~~~~~~k~~k~~g~l~l~i~~~~~  134 (150)
T cd04019          76 KDEPLGRAVIPLNDIERRVDDR-PVPSRWFSLERPGGAMEQKKKRKFASRIHLRLCLDGG  134 (150)
T ss_pred             CCCeEEEEEEEHHHCcccCCCC-ccCCceEECcCCCCcccccccCcccccEEEEEEecCc
Confidence            7899999999999987542211 13479999987654        457999999999864

MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates

>cd04044 C2A_Tricalbin-like C2 domain first repeat present in Tricalbin-like proteins

Probab=99.83  E-value=1.2e-19  Score=147.24  Aligned_cols=122  Identities=24%  Similarity=0.406  Sum_probs=101.0

Q ss_pred             cEEEEEEEEeecCCCCCCCCCCCCCcEEEEEEcC-CceEEEEeecCCCCCCccccEEEEeeeCCCCCceEEEEEEeccCC
Q 021710           19 HDLEITIICAKHLKNVNWRNGGDLKPYVVFYVDP-AYRLATQSDDSGSTRPVWNERFTLPITHSVRESVLTLEIFHSKLS   97 (308)
Q Consensus        19 ~~L~VtIisAk~L~~~~~~~~~~~dPYv~v~l~~-~~k~kT~v~k~gt~nP~WnE~f~f~l~~~~~~~~L~l~V~d~~~~   97 (308)
                      +.|+|+|++|++|+..+...+ .+||||++++.. ..+.+|+++++ +.||.|||.|.|.+..  ....|.|+|||++. 
T Consensus         2 g~l~v~v~~a~~L~~~~~~~~-~~dpyv~v~~~~~~~~~kT~~~~~-~~~P~Wne~~~~~v~~--~~~~l~~~v~d~~~-   76 (124)
T cd04044           2 GVLAVTIKSARGLKGSDIIGG-TVDPYVTFSISNRRELARTKVKKD-TSNPVWNETKYILVNS--LTEPLNLTVYDFND-   76 (124)
T ss_pred             eEEEEEEEcccCCCcccccCC-CCCCeEEEEECCCCcceEeeeecC-CCCCcceEEEEEEeCC--CCCEEEEEEEecCC-
Confidence            679999999999997665443 589999999987 57899999998 8999999999999874  46789999999983 


Q ss_pred             CCCCceeeeEEEeCcccccCCCCCCCceeEEEEEeCCCCCCccEEEEEEEEcc
Q 021710           98 ETPKPLVGSVKFPLAHLVDSDSSEPTQYVRKLEVLRPSGRPQGKIRVKLVLNG  150 (308)
Q Consensus        98 ~~~d~lLG~~~ipL~~L~~~~~~~~~~~~~~~~L~~~sg~~~G~L~v~v~~~~  150 (308)
                      ...|++||++.++|.++.......    ..+..| ..+++..|+|+|+++|.+
T Consensus        77 ~~~d~~iG~~~~~l~~l~~~~~~~----~~~~~~-~~~~k~~G~i~~~l~~~p  124 (124)
T cd04044          77 KRKDKLIGTAEFDLSSLLQNPEQE----NLTKNL-LRNGKPVGELNYDLRFFP  124 (124)
T ss_pred             CCCCceeEEEEEEHHHhccCcccc----Ccchhh-hcCCccceEEEEEEEeCC
Confidence            568899999999999998764331    234444 357888999999999864

5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain.

>cd08401 C2A_RasA2_RasA3 C2 domain first repeat present in RasA2 and RasA3

Probab=99.82  E-value=3.1e-19  Score=145.59  Aligned_cols=118  Identities=21%  Similarity=0.209  Sum_probs=98.1

Q ss_pred             EEEEEEEeecCCCCCCCCCCCCCcEEEEEEcCCceEEEEeecCCCCCCccccEEEEeeeCCCCCceEEEEEEeccCCCCC
Q 021710           21 LEITIICAKHLKNVNWRNGGDLKPYVVFYVDPAYRLATQSDDSGSTRPVWNERFTLPITHSVRESVLTLEIFHSKLSETP  100 (308)
Q Consensus        21 L~VtIisAk~L~~~~~~~~~~~dPYv~v~l~~~~k~kT~v~k~gt~nP~WnE~f~f~l~~~~~~~~L~l~V~d~~~~~~~  100 (308)
                      |.|+|++|+||+..+...+ .+||||++.++...+.+|+++++ +.||+|||+|.|.+.+  ....|.|.|||++ ...+
T Consensus         2 l~v~v~~a~~L~~~~~~~g-~sDpYv~v~l~~~~~~kT~v~~k-t~~P~WnE~F~f~v~~--~~~~l~~~v~d~~-~~~~   76 (121)
T cd08401           2 LKIKIGEAKNLPPRSGPNK-MRDCYCTVNLDQEEVFRTKTVEK-SLCPFFGEDFYFEIPR--TFRHLSFYIYDRD-VLRR   76 (121)
T ss_pred             eEEEEEEccCCCCCCCCCC-CcCcEEEEEECCccEEEeeEEEC-CCCCccCCeEEEEcCC--CCCEEEEEEEECC-CCCC
Confidence            7899999999998643332 58999999998656789999998 9999999999999986  3478999999998 4678


Q ss_pred             CceeeeEEEeCcccccCCCCCCCceeEEEEEeCC--CCCCccEEEEEEEE
Q 021710          101 KPLVGSVKFPLAHLVDSDSSEPTQYVRKLEVLRP--SGRPQGKIRVKLVL  148 (308)
Q Consensus       101 d~lLG~~~ipL~~L~~~~~~~~~~~~~~~~L~~~--sg~~~G~L~v~v~~  148 (308)
                      +++||.+.|+|+++....     ....||+|...  .++.+|+|+++++|
T Consensus        77 ~~~iG~~~i~l~~l~~~~-----~~~~w~~L~~~~~~~~~~G~i~l~~~~  121 (121)
T cd08401          77 DSVIGKVAIKKEDLHKYY-----GKDTWFPLQPVDADSEVQGKVHLELRL  121 (121)
T ss_pred             CceEEEEEEEHHHccCCC-----CcEeeEEEEccCCCCcccEEEEEEEEC
Confidence            999999999999998643     34689999753  34568999999875

RasA2 and RasA3 are GAP1s (GTPase activating protein 1s ), Ras-specific GAP members, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. RasA2 and RasA3 are both inositol 1,3,4,5-tetrakisphosphate-binding proteins and contain an N-terminal C2 domain, a Ras-GAP domain, a pleckstrin-homology (PH) domain which localizes it to the plasma membrane, and Bruton's Tyrosine Kinase (BTK) a zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular p

>cd08379 C2D_MCTP_PRT_plant C2 domain fourth repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset

Probab=99.82  E-value=1.8e-19  Score=148.14  Aligned_cols=113  Identities=27%  Similarity=0.485  Sum_probs=94.1

Q ss_pred             EEEEEEEEeec---CCCCCCCCCCCCCcEEEEEEcCCceEEEEeecCCCCCCccccEEEEeeeCCCCCceEEEEEEeccC
Q 021710           20 DLEITIICAKH---LKNVNWRNGGDLKPYVVFYVDPAYRLATQSDDSGSTRPVWNERFTLPITHSVRESVLTLEIFHSKL   96 (308)
Q Consensus        20 ~L~VtIisAk~---L~~~~~~~~~~~dPYv~v~l~~~~k~kT~v~k~gt~nP~WnE~f~f~l~~~~~~~~L~l~V~d~~~   96 (308)
                      .|+|+|++|++   |...+..+.  +||||+++++. ++.||+++++ +.||+|||+|.|.+...  ...|.|+|||++.
T Consensus         1 ~L~v~v~~A~~~~~l~~~d~~g~--sDPYv~i~~g~-~~~rTk~~~~-~~nP~WnE~f~f~v~~~--~~~l~v~V~d~d~   74 (126)
T cd08379           1 ILEVGILGAQGLDVLRAKDGRGS--TDAYCVAKYGP-KWVRTRTVED-SSNPRWNEQYTWPVYDP--CTVLTVGVFDNSQ   74 (126)
T ss_pred             CeEEEEEEeECCccccccccCCC--CCeeEEEEECC-EEeEcCcccC-CCCCcceeEEEEEecCC--CCEEEEEEEECCC
Confidence            38999999999   787787764  99999999986 7889999998 89999999999999763  4589999999883


Q ss_pred             CC------CCCceeeeEEEeCcccccCCCCCCCceeEEEEEeCCC---CCCccEEEE
Q 021710           97 SE------TPKPLVGSVKFPLAHLVDSDSSEPTQYVRKLEVLRPS---GRPQGKIRV  144 (308)
Q Consensus        97 ~~------~~d~lLG~~~ipL~~L~~~~~~~~~~~~~~~~L~~~s---g~~~G~L~v  144 (308)
                       .      ..|++||++.|+|.++..+.     ....||+|++.+   .+..|+|++
T Consensus        75 -~~~~~~~~~dd~lG~~~i~l~~l~~~~-----~~~~~~~L~~~~~~~~~~~g~l~~  125 (126)
T cd08379          75 -SHWKEAVQPDVLIGKVRIRLSTLEDDR-----VYAHSYPLLSLNPSGVKKMGELEC  125 (126)
T ss_pred             -ccccccCCCCceEEEEEEEHHHccCCC-----EEeeEEEeEeCCCCCccCCcEEEe
Confidence             3      38999999999999988654     346899998654   345677764

MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphate

>cd04015 C2_plant_PLD C2 domain present in plant phospholipase D (PLD)

Probab=99.82  E-value=3.1e-19  Score=152.26  Aligned_cols=122  Identities=26%  Similarity=0.404  Sum_probs=100.4

Q ss_pred             ccEEEEEEEEeecCCCCCCC----------------------------CCCCCCcEEEEEEcCCceEEEEeecCCCCCCc
Q 021710           18 THDLEITIICAKHLKNVNWR----------------------------NGGDLKPYVVFYVDPAYRLATQSDDSGSTRPV   69 (308)
Q Consensus        18 ~~~L~VtIisAk~L~~~~~~----------------------------~~~~~dPYv~v~l~~~~k~kT~v~k~gt~nP~   69 (308)
                      .++|+|+|++|++|.+.+..                            ..+.+||||+|+++...+.+|+++++ +.||+
T Consensus         6 hG~L~v~I~eA~~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~sDPYv~V~l~~~~~~rT~v~~~-~~nP~   84 (158)
T cd04015           6 HGTLDVTIYEADNLPNMDMFSEKLRRFFSKLVGCSEPTLKRPSSHRHVGKITSDPYATVDLAGARVARTRVIEN-SENPV   84 (158)
T ss_pred             eeeeEEEEEEeccCCCcccccchhhHHHHHHHhhcccccccccccccCCCCCcCeEEEEEECCeEeeEEEEeCC-CCCCc
Confidence            58999999999999987631                            12258999999998756679999998 79999


Q ss_pred             cccEEEEeeeCCCCCceEEEEEEeccCCCCCCceeeeEEEeCcccccCCCCCCCceeEEEEEeCCCCCC---ccEEEEEE
Q 021710           70 WNERFTLPITHSVRESVLTLEIFHSKLSETPKPLVGSVKFPLAHLVDSDSSEPTQYVRKLEVLRPSGRP---QGKIRVKL  146 (308)
Q Consensus        70 WnE~f~f~l~~~~~~~~L~l~V~d~~~~~~~d~lLG~~~ipL~~L~~~~~~~~~~~~~~~~L~~~sg~~---~G~L~v~v  146 (308)
                      |||+|.|.+...  ...|.|+|||++. . .+++||++.|+|+++..+.     ....|++|.+.++++   .++|+|++
T Consensus        85 WnE~F~~~~~~~--~~~l~~~V~d~d~-~-~~~~IG~~~i~l~~l~~g~-----~~~~w~~L~~~~~~~~~~~~~l~v~~  155 (158)
T cd04015          85 WNESFHIYCAHY--ASHVEFTVKDNDV-V-GAQLIGRAYIPVEDLLSGE-----PVEGWLPILDSNGKPPKPGAKIRVSL  155 (158)
T ss_pred             cceEEEEEccCC--CCEEEEEEEeCCC-c-CCcEEEEEEEEhHHccCCC-----CcceEEECcCCCCCCCCCCCEEEEEE
Confidence            999999998753  4679999999983 3 5789999999999998643     346999998766553   58999999


Q ss_pred             EEc
Q 021710          147 VLN  149 (308)
Q Consensus       147 ~~~  149 (308)
                      +|.
T Consensus       156 ~f~  158 (158)
T cd04015         156 QFT  158 (158)
T ss_pred             EEC
Confidence            884

PLD hydrolyzes terminal phosphodiester bonds in diester glycerophospholipids resulting in the degradation of phospholipids. In vitro PLD transfers phosphatidic acid to primary alcohols. In plants PLD plays a role in germination, seedling growth, phosphatidylinositol metabolism, and changes in phospholipid composition. There is a single Ca(2+)/phospholipid-binding C2 domain in PLD. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins whic

>cd08375 C2_Intersectin C2 domain present in Intersectin

Probab=99.82  E-value=3.7e-19  Score=148.11  Aligned_cols=122  Identities=20%  Similarity=0.358  Sum_probs=100.5

Q ss_pred             ccEEEEEEEEeecCCCCCCCCCCCCCcEEEEEEcCCceEEEEeecCCCCCCccccEEEEeeeCCCCCceEEEEEEeccCC
Q 021710           18 THDLEITIICAKHLKNVNWRNGGDLKPYVVFYVDPAYRLATQSDDSGSTRPVWNERFTLPITHSVRESVLTLEIFHSKLS   97 (308)
Q Consensus        18 ~~~L~VtIisAk~L~~~~~~~~~~~dPYv~v~l~~~~k~kT~v~k~gt~nP~WnE~f~f~l~~~~~~~~L~l~V~d~~~~   97 (308)
                      .+.|+|+|++|++|+..+..+.  +||||++.+.. .+.+|+++++ +.||.|||+|.|.+... ....|.|+|||++ .
T Consensus        14 ~G~L~V~Vi~A~~L~~~d~~g~--~DPYv~v~~~~-~~~kT~vi~~-t~nP~Wne~f~f~v~~~-~~~~l~i~V~D~d-~   87 (136)
T cd08375          14 IGRLMVVIVEGRDLKPCNSNGK--SDPYCEVSMGS-QEHKTKVVSD-TLNPKWNSSMQFFVKDL-EQDVLCITVFDRD-F   87 (136)
T ss_pred             cEEEEEEEEEeeCCCCCCCCCC--cCcEEEEEECC-EeeeccccCC-CCCCccCceEEEEecCc-cCCEEEEEEEECC-C
Confidence            4899999999999999887764  99999999975 7899999998 89999999999999753 4578999999998 3


Q ss_pred             CCCCceeeeEEEeCcccccCCCCCCCceeEEEEEeCCCCCCccEEEEEEEE
Q 021710           98 ETPKPLVGSVKFPLAHLVDSDSSEPTQYVRKLEVLRPSGRPQGKIRVKLVL  148 (308)
Q Consensus        98 ~~~d~lLG~~~ipL~~L~~~~~~~~~~~~~~~~L~~~sg~~~G~L~v~v~~  148 (308)
                      ...|++||++.|+|.++.............|+.|   ++...|+|+|++.|
T Consensus        88 ~~~d~~lG~~~i~l~~l~~~~~~~~~~~~~~~~~---~~~~~g~i~l~~~~  135 (136)
T cd08375          88 FSPDDFLGRTEIRVADILKETKESKGPITKRLLL---HEVPTGEVVVKLDL  135 (136)
T ss_pred             CCCCCeeEEEEEEHHHhccccccCCCcEEEEecc---ccccceeEEEEEEe
Confidence            5678999999999999986332221133456666   46678999999987

A single instance of the C2 domain is located C terminally in the intersectin protein. Intersectin functions as a scaffolding protein, providing a link between the actin cytoskeleton and the components of endocytosis and plays a role in signal transduction. In addition to C2, intersectin contains several additional domains including: Eps15 homology domains, SH3 domains, a RhoGEF domain, and a PH domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking pro

>cd08378 C2B_MCTP_PRT_plant C2 domain second repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset

Probab=99.82  E-value=2.2e-19  Score=146.54  Aligned_cols=118  Identities=17%  Similarity=0.313  Sum_probs=98.0

Q ss_pred             EEEEEEEeecCCCCCCCCCCCCCcEEEEEEcCCceEEEEeecCCCCCCccccEEEEeeeCCCCCceEEEEEEeccCCCCC
Q 021710           21 LEITIICAKHLKNVNWRNGGDLKPYVVFYVDPAYRLATQSDDSGSTRPVWNERFTLPITHSVRESVLTLEIFHSKLSETP  100 (308)
Q Consensus        21 L~VtIisAk~L~~~~~~~~~~~dPYv~v~l~~~~k~kT~v~k~gt~nP~WnE~f~f~l~~~~~~~~L~l~V~d~~~~~~~  100 (308)
                      |+|+|++|++|...    .  +||||++.+.. .+.+|+++++ +.||+|||+|.|.+... ....|.|+|||++. . .
T Consensus         2 L~V~Vi~a~~L~~~----~--~Dpyv~v~l~~-~~~kT~v~~~-t~nP~Wne~F~f~~~~~-~~~~L~~~v~d~d~-~-~   70 (121)
T cd08378           2 LYVRVVKARGLPAN----S--NDPVVEVKLGN-YKGSTKAIER-TSNPEWNQVFAFSKDRL-QGSTLEVSVWDKDK-A-K   70 (121)
T ss_pred             EEEEEEEecCCCcc----c--CCCEEEEEECC-ccccccccCC-CCCCccceEEEEEcCCC-cCCEEEEEEEeCCC-C-c
Confidence            89999999999876    3  89999999986 7899999998 89999999999998653 46789999999983 3 7


Q ss_pred             CceeeeEEEeCcccccCCCCCCCceeEEEEEeCCC-CCCccEEEEEEEEc
Q 021710          101 KPLVGSVKFPLAHLVDSDSSEPTQYVRKLEVLRPS-GRPQGKIRVKLVLN  149 (308)
Q Consensus       101 d~lLG~~~ipL~~L~~~~~~~~~~~~~~~~L~~~s-g~~~G~L~v~v~~~  149 (308)
                      +++||++.|+|+++.............||.|.+.. .+..|+|+|+|+|.
T Consensus        71 ~~~lG~~~i~l~~l~~~~~~~~~~~~~W~~L~~~~~~~~~G~i~l~~~~~  120 (121)
T cd08378          71 DDFLGGVCFDLSEVPTRVPPDSPLAPQWYRLEDKKGGRVGGELMLAVWFG  120 (121)
T ss_pred             CceeeeEEEEhHhCcCCCCCCCCCCcceEEccCCCCCccceEEEEEEEec
Confidence            89999999999998764322111346899998754 36789999999984

MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphate

>cd04033 C2_NEDD4_NEDD4L C2 domain present in the Human neural precursor cell-expressed, developmentally down-regulated 4 (NEDD4) and NEDD4-like (NEDD4L/NEDD42)

Probab=99.81  E-value=4.9e-19  Score=145.94  Aligned_cols=124  Identities=20%  Similarity=0.350  Sum_probs=101.5

Q ss_pred             EEEEEEEEeecCCCCCCCCCCCCCcEEEEEEcCC------ceEEEEeecCCCCCCccccEEEEeeeCCCCCceEEEEEEe
Q 021710           20 DLEITIICAKHLKNVNWRNGGDLKPYVVFYVDPA------YRLATQSDDSGSTRPVWNERFTLPITHSVRESVLTLEIFH   93 (308)
Q Consensus        20 ~L~VtIisAk~L~~~~~~~~~~~dPYv~v~l~~~------~k~kT~v~k~gt~nP~WnE~f~f~l~~~~~~~~L~l~V~d   93 (308)
                      .|+|+|++|++|...+..+.  .||||++.+...      .+.+|+++++ +.||+|||+|.|.+..  ....|.|+|||
T Consensus         1 ~L~v~Vi~a~~L~~~d~~~~--~Dpyv~v~~~~~~~~~~~~~~kT~v~~~-t~nP~Wne~f~f~~~~--~~~~l~~~v~d   75 (133)
T cd04033           1 ILRVKVLAGIDLAKKDIFGA--SDPYVKISLYDPDGNGEIDSVQTKTIKK-TLNPKWNEEFFFRVNP--REHRLLFEVFD   75 (133)
T ss_pred             CEEEEEEEeECCCcccCCCC--cCcEEEEEEECCCCCCcccceeeeEEcC-CCCCcEeeEEEEEEcC--CCCEEEEEEEE
Confidence            38999999999999887764  999999999753      2579999988 9999999999999876  35679999999


Q ss_pred             ccCCCCCCceeeeEEEeCcccccCCCCC-CCceeEEEEEeCC--CCCCccEEEEEEEEc
Q 021710           94 SKLSETPKPLVGSVKFPLAHLVDSDSSE-PTQYVRKLEVLRP--SGRPQGKIRVKLVLN  149 (308)
Q Consensus        94 ~~~~~~~d~lLG~~~ipL~~L~~~~~~~-~~~~~~~~~L~~~--sg~~~G~L~v~v~~~  149 (308)
                      ++ ...++++||++.|+|.++....... ......||+|+..  .++..|+|+|++.|.
T Consensus        76 ~~-~~~~~~~iG~~~i~l~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~G~l~~~~~~~  133 (133)
T cd04033          76 EN-RLTRDDFLGQVEVPLNNLPTETPGNERRYTFKDYLLRPRSSKSRVKGHLRLYMAYL  133 (133)
T ss_pred             CC-CCCCCCeeEEEEEEHHHCCCcCccccccccchheeeeecCCCCcceeEEEEEEeeC
Confidence            98 3568899999999999998654321 1134689999864  456799999999873

Nedd4 and Nedd4-2 are two of the nine members of the Human Nedd4 family. All vertebrates appear to have both Nedd4 and Nedd4-2 genes. They are thought to participate in the regulation of epithelial Na+ channel (ENaC) activity. They also have identical specificity for ubiquitin conjugating enzymes (E2). Nedd4 and Nedd4-2 are composed of a C2 domain, 2-4 WW domains, and a ubiquitin ligase Hect domain. Their WW domains can bind PPxY (PY) or LPSY motifs, and in vitro studies suggest that WW3 and WW4 of both proteins bind PY motifs in the key substrates, with WW3 generally exhibiting higher affinity. Most Nedd4 family members, especially Nedd4-2, also have multiple splice variants, which might play different roles in regulating their substrates. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen

>cd08678 C2_C21orf25-like C2 domain found in the Human chromosome 21 open reading frame 25 (C21orf25) protein

Probab=99.81  E-value=7.1e-19  Score=144.11  Aligned_cols=118  Identities=18%  Similarity=0.347  Sum_probs=98.4

Q ss_pred             EEEEEEEeecCCCCCCCCCCCCCcEEEEEEcC-CceEEEEeecCCCCCCccccEEEEeeeCCCCCceEEEEEEeccCCCC
Q 021710           21 LEITIICAKHLKNVNWRNGGDLKPYVVFYVDP-AYRLATQSDDSGSTRPVWNERFTLPITHSVRESVLTLEIFHSKLSET   99 (308)
Q Consensus        21 L~VtIisAk~L~~~~~~~~~~~dPYv~v~l~~-~~k~kT~v~k~gt~nP~WnE~f~f~l~~~~~~~~L~l~V~d~~~~~~   99 (308)
                      |.|+|++|++|..  ..+  .+||||++.++. ..+.+|+++++ +.||+|||+|.|.+..  ....|.|+|||++. ..
T Consensus         1 l~v~v~~A~~L~~--~~g--~~dpyv~v~~~~~~~~~kT~v~~~-t~nP~Wne~f~f~~~~--~~~~l~~~v~d~~~-~~   72 (126)
T cd08678           1 LLVKNIKANGLSE--AAG--SSNPYCVLEMDEPPQKYQSSTQKN-TSNPFWDEHFLFELSP--NSKELLFEVYDNGK-KS   72 (126)
T ss_pred             CEEEEEEecCCCC--CCC--CcCCEEEEEECCCCcEEEeEEEec-CCCCccCceEEEEeCC--CCCEEEEEEEECCC-CC
Confidence            6799999999987  334  599999999974 35789999998 8999999999999965  35689999999983 56


Q ss_pred             CCceeeeEEEeCcccccCCCCCCCceeEEEEEeCC---CCCCccEEEEEEEEccC
Q 021710          100 PKPLVGSVKFPLAHLVDSDSSEPTQYVRKLEVLRP---SGRPQGKIRVKLVLNGR  151 (308)
Q Consensus       100 ~d~lLG~~~ipL~~L~~~~~~~~~~~~~~~~L~~~---sg~~~G~L~v~v~~~~~  151 (308)
                      ++++||++.|+|++|.....     ...||+|...   +.+..|+|.|++.|.+.
T Consensus        73 ~~~~lG~~~i~l~~l~~~~~-----~~~~~~L~~~~~~~~~~~G~l~l~~~~~~~  122 (126)
T cd08678          73 DSKFLGLAIVPFDELRKNPS-----GRQIFPLQGRPYEGDSVSGSITVEFLFMEP  122 (126)
T ss_pred             CCceEEEEEEeHHHhccCCc-----eeEEEEecCCCCCCCCcceEEEEEEEEecc
Confidence            79999999999999987543     2579999754   24569999999999875

The members in this cd are named after the Human C21orf25 which contains a single C2 domain. Several other members contain a C1 domain downstream of the C2 domain. No other information on this protein is currently known. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a

>cd04024 C2A_Synaptotagmin-like C2 domain first repeat present in Synaptotagmin-like proteins

Probab=99.81  E-value=5.6e-19  Score=144.31  Aligned_cols=122  Identities=19%  Similarity=0.331  Sum_probs=100.4

Q ss_pred             cEEEEEEEEeecCCCCCC--CCCCCCCcEEEEEEcCCceEEEEeecCCCCCCccccEEEEeeeCCCCCceEEEEEEeccC
Q 021710           19 HDLEITIICAKHLKNVNW--RNGGDLKPYVVFYVDPAYRLATQSDDSGSTRPVWNERFTLPITHSVRESVLTLEIFHSKL   96 (308)
Q Consensus        19 ~~L~VtIisAk~L~~~~~--~~~~~~dPYv~v~l~~~~k~kT~v~k~gt~nP~WnE~f~f~l~~~~~~~~L~l~V~d~~~   96 (308)
                      +.|+|+|++|++|...+.  .+  .+||||++.+.. .+.+|+++++ +.||+|||+|.|.+... ....|.|+|||++.
T Consensus         1 g~l~v~v~~a~~L~~~~~~~~~--~~dPyv~v~~~~-~~~kT~~~~~-t~~P~Wne~f~~~~~~~-~~~~l~i~v~d~~~   75 (128)
T cd04024           1 GVLRVHVVEAKDLAAKDRSGKG--KSDPYAILSVGA-QRFKTQTIPN-TLNPKWNYWCEFPIFSA-QNQLLKLILWDKDR   75 (128)
T ss_pred             CEEEEEEEEeeCCCcccCCCCC--CcCCeEEEEECC-EEEecceecC-CcCCccCCcEEEEecCC-CCCEEEEEEEECCC
Confidence            579999999999998877  55  499999999975 7899999998 99999999999999763 46789999999983


Q ss_pred             CCCCCceeeeEEEeCcccccCCCCCCCceeEEEEEeCCC----CCCccEEEEEEEE
Q 021710           97 SETPKPLVGSVKFPLAHLVDSDSSEPTQYVRKLEVLRPS----GRPQGKIRVKLVL  148 (308)
Q Consensus        97 ~~~~d~lLG~~~ipL~~L~~~~~~~~~~~~~~~~L~~~s----g~~~G~L~v~v~~  148 (308)
                       ...+++||++.|+|.++.......  ....||.|.+.+    ....|+|+|++.|
T Consensus        76 -~~~~~~lG~~~i~l~~~~~~~~~~--~~~~w~~L~~~~~~~~~~~~G~i~l~~~~  128 (128)
T cd04024          76 -FAGKDYLGEFDIALEEVFADGKTG--QSDKWITLKSTRPGKTSVVSGEIHLQFSW  128 (128)
T ss_pred             -CCCCCcceEEEEEHHHhhcccccC--ccceeEEccCcccCccccccceEEEEEEC
Confidence             568899999999999998532221  346899997552    2369999999875

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permu

>cd08400 C2_Ras_p21A1 C2 domain present in RAS p21 protein activator 1 (RasA1)

Probab=99.81  E-value=8.8e-19  Score=143.83  Aligned_cols=118  Identities=17%  Similarity=0.293  Sum_probs=96.2

Q ss_pred             cEEEEEEEEeecCCCCCCCCCCCCCcEEEEEEcCCceEEEEeecCCCCCCccccEEEEeeeCCCCCceEEEEEEeccCCC
Q 021710           19 HDLEITIICAKHLKNVNWRNGGDLKPYVVFYVDPAYRLATQSDDSGSTRPVWNERFTLPITHSVRESVLTLEIFHSKLSE   98 (308)
Q Consensus        19 ~~L~VtIisAk~L~~~~~~~~~~~dPYv~v~l~~~~k~kT~v~k~gt~nP~WnE~f~f~l~~~~~~~~L~l~V~d~~~~~   98 (308)
                      ..|+|+|++|++|+..+     .+||||+|.++...+.+|++ ++ +.||.|||+|.|.+... ....|+|.|||++ ..
T Consensus         4 ~~L~V~Vi~A~~L~~~~-----~~DPYv~v~l~~~~~~kT~v-~~-~~nP~WnE~f~f~~~~~-~~~~l~v~v~d~~-~~   74 (126)
T cd08400           4 RSLQLNVLEAHKLPVKH-----VPHPYCVISLNEVKVARTKV-RE-GPNPVWSEEFVFDDLPP-DVNSFTISLSNKA-KR   74 (126)
T ss_pred             eEEEEEEEEeeCCCCCC-----CCCeeEEEEECCEeEEEeec-CC-CCCCccCCEEEEecCCC-CcCEEEEEEEECC-CC
Confidence            57999999999998642     48999999998756678987 44 78999999999986543 2357899999988 35


Q ss_pred             CCCceeeeEEEeCcccccCCCCCCCceeEEEEEeCCC---CCCccEEEEEEEEcc
Q 021710           99 TPKPLVGSVKFPLAHLVDSDSSEPTQYVRKLEVLRPS---GRPQGKIRVKLVLNG  150 (308)
Q Consensus        99 ~~d~lLG~~~ipL~~L~~~~~~~~~~~~~~~~L~~~s---g~~~G~L~v~v~~~~  150 (308)
                      .++++||++.|+|.++..+.     ....||.|...+   .+..|+|+|+++|.+
T Consensus        75 ~~d~~iG~v~i~l~~l~~~~-----~~~~W~~L~~~~~~~~~~~G~i~l~l~~~~  124 (126)
T cd08400          75 SKDSEIAEVTVQLSKLQNGQ-----ETDEWYPLSSASPLKGGEWGSLRIRARYSH  124 (126)
T ss_pred             CCCCeEEEEEEEHhHccCCC-----cccEeEEcccCCCCCCCcCcEEEEEEEEEc
Confidence            78999999999999987743     235899998653   345799999999976

RasA1 is a GAP1 (GTPase activating protein 1), a Ras-specific GAP member, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. RasA1 contains a C2 domain, a Ras-GAP domain, a pleckstrin homology (PH)-like domain, a SH3 domain, and 2 SH2 domains. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficki

>cd08376 C2B_MCTP_PRT C2 domain second repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP)

Probab=99.81  E-value=7.1e-19  Score=141.64  Aligned_cols=115  Identities=19%  Similarity=0.354  Sum_probs=98.3

Q ss_pred             EEEEEEEEeecCCCCCCCCCCCCCcEEEEEEcCCceEEEEeecCCCCCCccccEEEEeeeCCCCCceEEEEEEeccCCCC
Q 021710           20 DLEITIICAKHLKNVNWRNGGDLKPYVVFYVDPAYRLATQSDDSGSTRPVWNERFTLPITHSVRESVLTLEIFHSKLSET   99 (308)
Q Consensus        20 ~L~VtIisAk~L~~~~~~~~~~~dPYv~v~l~~~~k~kT~v~k~gt~nP~WnE~f~f~l~~~~~~~~L~l~V~d~~~~~~   99 (308)
                      +|+|+|++|++|+..+..+  .+||||++.+.. .+.+|+++++ +.||.|||+|.|.+... ....|.|+|||++. ..
T Consensus         1 ~~~V~v~~a~~L~~~~~~~--~~dPyv~v~~~~-~~~kT~v~~~-t~nP~Wne~f~f~~~~~-~~~~l~v~v~d~~~-~~   74 (116)
T cd08376           1 VVTIVLVEGKNLPPMDDNG--LSDPYVKFRLGN-EKYKSKVCSK-TLNPQWLEQFDLHLFDD-QSQILEIEVWDKDT-GK   74 (116)
T ss_pred             CEEEEEEEEECCCCCCCCC--CCCcEEEEEECC-EeEecccccC-CCCCceeEEEEEEecCC-CCCEEEEEEEECCC-CC
Confidence            4789999999999988765  499999999975 7899999998 99999999999998764 46789999999983 56


Q ss_pred             CCceeeeEEEeCcccccCCCCCCCceeEEEEEeCCCCCCccEEEEEEEEc
Q 021710          100 PKPLVGSVKFPLAHLVDSDSSEPTQYVRKLEVLRPSGRPQGKIRVKLVLN  149 (308)
Q Consensus       100 ~d~lLG~~~ipL~~L~~~~~~~~~~~~~~~~L~~~sg~~~G~L~v~v~~~  149 (308)
                      ++++||++.++|+++..+.     ....|++|...    .|+|++.+.++
T Consensus        75 ~~~~iG~~~~~l~~l~~~~-----~~~~w~~L~~~----~G~~~~~~~~~  115 (116)
T cd08376          75 KDEFIGRCEIDLSALPREQ-----THSLELELEDG----EGSLLLLLTLT  115 (116)
T ss_pred             CCCeEEEEEEeHHHCCCCC-----ceEEEEEccCC----CcEEEEEEEec
Confidence            8999999999999987643     34689999632    59999998875

MCTPs are involved in Ca2+ signaling at the membrane. MCTP is composed of a variable N-terminal sequence, three C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular protei

>cd04025 C2B_RasA1_RasA4 C2 domain second repeat present in RasA1 and RasA4

Probab=99.81  E-value=7.8e-19  Score=143.02  Aligned_cols=117  Identities=22%  Similarity=0.378  Sum_probs=97.5

Q ss_pred             EEEEEEEEeecCCCCCCCCCCCCCcEEEEEEcCCceEEEEeecCCCCCCccccEEEEeeeCCCCCceEEEEEEeccCCCC
Q 021710           20 DLEITIICAKHLKNVNWRNGGDLKPYVVFYVDPAYRLATQSDDSGSTRPVWNERFTLPITHSVRESVLTLEIFHSKLSET   99 (308)
Q Consensus        20 ~L~VtIisAk~L~~~~~~~~~~~dPYv~v~l~~~~k~kT~v~k~gt~nP~WnE~f~f~l~~~~~~~~L~l~V~d~~~~~~   99 (308)
                      .|+|+|++|++|...+..+  .+||||++.+.. .+.+|+++++ +.||+|||+|.|.+... ....|.|+|||++ ...
T Consensus         1 ~L~v~vi~a~~L~~~d~~~--~~DPyv~v~~~~-~~~kT~v~~~-t~nP~Wne~f~f~~~~~-~~~~l~~~v~d~~-~~~   74 (123)
T cd04025           1 RLRCHVLEARDLAPKDRNG--TSDPFVRVFYNG-QTLETSVVKK-SCYPRWNEVFEFELMEG-ADSPLSVEVWDWD-LVS   74 (123)
T ss_pred             CEEEEEEEeeCCCCCCCCC--CcCceEEEEECC-EEEeceeecC-CCCCccCcEEEEEcCCC-CCCEEEEEEEECC-CCC
Confidence            3899999999999888765  499999999975 7789999998 89999999999999764 3678999999988 356


Q ss_pred             CCceeeeEEEeCcccccCCCCCCCceeEEEEEeC------CCCCCccEEEEEEE
Q 021710          100 PKPLVGSVKFPLAHLVDSDSSEPTQYVRKLEVLR------PSGRPQGKIRVKLV  147 (308)
Q Consensus       100 ~d~lLG~~~ipL~~L~~~~~~~~~~~~~~~~L~~------~sg~~~G~L~v~v~  147 (308)
                      .+++||.+.++|.++.....     ...||.|..      .+++..|.|+|.|+
T Consensus        75 ~~~~iG~~~~~l~~l~~~~~-----~~~w~~L~~~~~~~~~~~~~~G~l~~~~~  123 (123)
T cd04025          75 KNDFLGKVVFSIQTLQQAKQ-----EEGWFRLLPDPRAEEESGGNLGSLRLKVR  123 (123)
T ss_pred             CCcEeEEEEEEHHHcccCCC-----CCCEEECCCCCCCCccccCceEEEEEEeC
Confidence            78999999999999976432     257999975      24556899998873

RasA1 and RasA4 are GAP1s (GTPase activating protein 1s ), Ras-specific GAP members, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. Both proteins contain two C2 domains, a Ras-GAP domain, a plextrin homology (PH)-like domain, and a Bruton's Tyrosine Kinase (BTK) zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such a

>cd04036 C2_cPLA2 C2 domain present in cytosolic PhosphoLipase A2 (cPLA2)

Probab=99.81  E-value=7.4e-19  Score=142.45  Aligned_cols=115  Identities=19%  Similarity=0.349  Sum_probs=96.7

Q ss_pred             EEEEEEEeecCCCCCCCCCCCCCcEEEEEEcC--CceEEEEeecCCCCCCccccEEEEeeeCCCCCceEEEEEEeccCCC
Q 021710           21 LEITIICAKHLKNVNWRNGGDLKPYVVFYVDP--AYRLATQSDDSGSTRPVWNERFTLPITHSVRESVLTLEIFHSKLSE   98 (308)
Q Consensus        21 L~VtIisAk~L~~~~~~~~~~~dPYv~v~l~~--~~k~kT~v~k~gt~nP~WnE~f~f~l~~~~~~~~L~l~V~d~~~~~   98 (308)
                      |+|+|++|++|+..+..+.  +||||++.+..  ..+.+|+++++ +.||+|||+|.|.+... ....|.|+|||++. .
T Consensus         2 L~V~vi~a~~L~~~~~~~~--~Dpyv~v~~~~~~~~~~kT~vv~~-t~nP~Wne~f~f~i~~~-~~~~l~v~v~d~d~-~   76 (119)
T cd04036           2 LTVRVLRATNITKGDLLST--PDCYVELWLPTASDEKKRTKTIKN-SINPVWNETFEFRIQSQ-VKNVLELTVMDEDY-V   76 (119)
T ss_pred             eEEEEEEeeCCCccCCCCC--CCcEEEEEEcCCCCccCccceecC-CCCCccceEEEEEeCcc-cCCEEEEEEEECCC-C
Confidence            7899999999999887654  99999999964  36789999998 89999999999998764 35679999999984 4


Q ss_pred             CCCceeeeEEEeCcccccCCCCCCCceeEEEEEeCCCCCCccEEEEEEEEc
Q 021710           99 TPKPLVGSVKFPLAHLVDSDSSEPTQYVRKLEVLRPSGRPQGKIRVKLVLN  149 (308)
Q Consensus        99 ~~d~lLG~~~ipL~~L~~~~~~~~~~~~~~~~L~~~sg~~~G~L~v~v~~~  149 (308)
                       .+++||++.++|+++..+.     ....|++|..   +..|+|+|+|.+.
T Consensus        77 -~~~~iG~~~~~l~~l~~g~-----~~~~~~~L~~---~~~g~l~~~~~~~  118 (119)
T cd04036          77 -MDDHLGTVLFDVSKLKLGE-----KVRVTFSLNP---QGKEELEVEFLLE  118 (119)
T ss_pred             -CCcccEEEEEEHHHCCCCC-----cEEEEEECCC---CCCceEEEEEEee
Confidence             8899999999999987643     4568999953   3589999998763

A single copy of the C2 domain is present in cPLA2 which releases arachidonic acid from membranes initiating the biosynthesis of potent inflammatory mediators such as prostaglandins, leukotrienes, and platelet-activating factor. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants o

>cd08377 C2C_MCTP_PRT C2 domain third repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP)

Probab=99.81  E-value=1e-18  Score=141.14  Aligned_cols=116  Identities=22%  Similarity=0.377  Sum_probs=98.6

Q ss_pred             cEEEEEEEEeecCCCCCCCCCCCCCcEEEEEEcCCceEEEEeecCCCCCCccccEEEEeeeCCCCCceEEEEEEeccCCC
Q 021710           19 HDLEITIICAKHLKNVNWRNGGDLKPYVVFYVDPAYRLATQSDDSGSTRPVWNERFTLPITHSVRESVLTLEIFHSKLSE   98 (308)
Q Consensus        19 ~~L~VtIisAk~L~~~~~~~~~~~dPYv~v~l~~~~k~kT~v~k~gt~nP~WnE~f~f~l~~~~~~~~L~l~V~d~~~~~   98 (308)
                      +.|+|+|++|++|+..+..+.  +||||++.+.. .+.+|+++++ +.||.|||+|.|.+..  ....|.|+|||++. .
T Consensus         1 g~l~v~v~~a~~L~~~~~~~~--~dPyv~v~~~~-~~~~T~~~~~-t~nP~W~e~f~~~~~~--~~~~l~~~v~d~~~-~   73 (119)
T cd08377           1 GFLQVKVIRASGLAAADIGGK--SDPFCVLELVN-ARLQTHTIYK-TLNPEWNKIFTFPIKD--IHDVLEVTVYDEDK-D   73 (119)
T ss_pred             CEEEEEEEeeeCCCCCCCCCC--CCcEEEEEECC-EeeecceecC-CcCCccCcEEEEEecC--cCCEEEEEEEECCC-C
Confidence            579999999999998887764  99999999986 6789999998 8999999999999875  35789999999983 5


Q ss_pred             CCCceeeeEEEeCcccccCCCCCCCceeEEEEEeCCC--CCCccEEEEEEEE
Q 021710           99 TPKPLVGSVKFPLAHLVDSDSSEPTQYVRKLEVLRPS--GRPQGKIRVKLVL  148 (308)
Q Consensus        99 ~~d~lLG~~~ipL~~L~~~~~~~~~~~~~~~~L~~~s--g~~~G~L~v~v~~  148 (308)
                      ..+++||++.++|.++..+       ...|+.|.+..  ++.+|+|.|++.|
T Consensus        74 ~~~~~iG~~~~~l~~~~~~-------~~~~~~l~~~~~~~~~~G~i~l~~~~  118 (119)
T cd08377          74 KKPEFLGKVAIPLLSIKNG-------ERKWYALKDKKLRTRAKGSILLEMDV  118 (119)
T ss_pred             CCCceeeEEEEEHHHCCCC-------CceEEECcccCCCCceeeEEEEEEEe
Confidence            6889999999999998643       24799998653  3469999999987

MCTPs are involved in Ca2+ signaling at the membrane. The cds in this family contain multiple C2 domains as well as a C-terminal PRT domain. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal tran

>cd04054 C2A_Rasal1_RasA4 C2 domain first repeat present in RasA1 and RasA4

Probab=99.80  E-value=1.1e-18  Score=142.08  Aligned_cols=118  Identities=18%  Similarity=0.314  Sum_probs=98.2

Q ss_pred             EEEEEEEeecCCCCCCCCCCCCCcEEEEEEcCCceEEEEeecCCCCCCccccEEEEeeeCCCCCceEEEEEEeccCCCCC
Q 021710           21 LEITIICAKHLKNVNWRNGGDLKPYVVFYVDPAYRLATQSDDSGSTRPVWNERFTLPITHSVRESVLTLEIFHSKLSETP  100 (308)
Q Consensus        21 L~VtIisAk~L~~~~~~~~~~~dPYv~v~l~~~~k~kT~v~k~gt~nP~WnE~f~f~l~~~~~~~~L~l~V~d~~~~~~~  100 (308)
                      |.|+|++|++|+..+..+.  +||||++.++...+.+|+++++ +.||+|||.|.|.+..  ....|.|+|||++ ....
T Consensus         2 l~v~vi~a~~L~~~d~~g~--~DPYv~v~~~~~~~~kT~v~~~-t~nP~Wne~f~~~~~~--~~~~l~v~v~d~~-~~~~   75 (121)
T cd04054           2 LYIRIVEGKNLPAKDITGS--SDPYCIVKVDNEVIIRTATVWK-TLNPFWGEEYTVHLPP--GFHTVSFYVLDED-TLSR   75 (121)
T ss_pred             EEEEEEEeeCCcCCCCCCC--CCceEEEEECCEeeeeeeeEcC-CCCCcccceEEEeeCC--CCCEEEEEEEECC-CCCC
Confidence            7899999999999988764  9999999998655679999998 8999999999999875  3578999999998 3568


Q ss_pred             CceeeeEEEeCcccccCCCCCCCceeEEEEEeC--CCCCCccEEEEEEEE
Q 021710          101 KPLVGSVKFPLAHLVDSDSSEPTQYVRKLEVLR--PSGRPQGKIRVKLVL  148 (308)
Q Consensus       101 d~lLG~~~ipL~~L~~~~~~~~~~~~~~~~L~~--~sg~~~G~L~v~v~~  148 (308)
                      +++||++.+++.++.....    ....|+.|+.  ..++..|+|+|++++
T Consensus        76 d~~iG~~~~~~~~~~~~~~----~~~~W~~L~~~~~~~~~~G~i~l~~~~  121 (121)
T cd04054          76 DDVIGKVSLTREVISAHPR----GIDGWMNLTEVDPDEEVQGEIHLELSV  121 (121)
T ss_pred             CCEEEEEEEcHHHhccCCC----CCCcEEECeeeCCCCccccEEEEEEEC
Confidence            9999999999998865322    2358999964  345568999998763

Rasal1 and RasA4 are both members of GAP1 (GTPase activating protein 1). Rasal1 responds to repetitive Ca2+ signals by associating with the plasma membrane and deactivating Ras. RasA4 suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. Both of these proteins contains two C2 domains, a Ras-GAP domain, a plextrin homology (PH)-like domain, and a Bruton's Tyrosine Kinase (BTK) zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins.

>cd04046 C2_Calpain C2 domain present in Calpain proteins

Probab=99.80  E-value=1.5e-18  Score=142.27  Aligned_cols=119  Identities=16%  Similarity=0.278  Sum_probs=99.0

Q ss_pred             ccEEEEEEEEeecCCCCCCCCCCCCCcEEEEEEcCCceEEEEeecCCCCCCccccEEEEeeeCCCCCceEEEEEEeccCC
Q 021710           18 THDLEITIICAKHLKNVNWRNGGDLKPYVVFYVDPAYRLATQSDDSGSTRPVWNERFTLPITHSVRESVLTLEIFHSKLS   97 (308)
Q Consensus        18 ~~~L~VtIisAk~L~~~~~~~~~~~dPYv~v~l~~~~k~kT~v~k~gt~nP~WnE~f~f~l~~~~~~~~L~l~V~d~~~~   97 (308)
                      ..+|+|+|++|++|+..+..+.  +||||++++.. .+.+|+++++ +.||+|||+|.|.+..  ....|.|+|||++. 
T Consensus         2 ~~~~~V~v~~A~~L~~~d~~g~--~dPyv~v~~~~-~~~kT~v~~~-t~nP~Wne~f~f~~~~--~~~~l~i~V~d~~~-   74 (126)
T cd04046           2 QVVTQVHVHSAEGLSKQDSGGG--ADPYVIIKCEG-ESVRSPVQKD-TLSPEFDTQAIFYRKK--PRSPIKIQVWNSNL-   74 (126)
T ss_pred             cEEEEEEEEeCcCCCCCCCCCC--cCccEEEEECC-EEEEeCccCC-CCCCcccceEEEEecC--CCCEEEEEEEECCC-
Confidence            4689999999999999887764  99999999986 6899999998 8999999999998875  46789999999873 


Q ss_pred             CCCCceeeeEEEeCcccccCCCCCCCceeEEEEEeC----CCCCCccEEEEEEEEccC
Q 021710           98 ETPKPLVGSVKFPLAHLVDSDSSEPTQYVRKLEVLR----PSGRPQGKIRVKLVLNGR  151 (308)
Q Consensus        98 ~~~d~lLG~~~ipL~~L~~~~~~~~~~~~~~~~L~~----~sg~~~G~L~v~v~~~~~  151 (308)
                       ..|++||.+++++.++..       ....+|+|..    .+++..|+|.|++.+.+.
T Consensus        75 -~~d~~lG~~~~~l~~~~~-------~~~~~~~l~~~~~~~~~~~~G~i~~~~~~~~~  124 (126)
T cd04046          75 -LCDEFLGQATLSADPNDS-------QTLRTLPLRKRGRDAAGEVPGTISVKVTSSDD  124 (126)
T ss_pred             -CCCCceEEEEEecccCCC-------cCceEEEcccCCCCCCCCCCCEEEEEEEEccc
Confidence             368999999999987532       2246677742    567789999999988754

A single C2 domain is found in calpains (EC 3.4.22.52, EC 3.4.22.53), calcium-dependent, non-lysosomal cysteine proteases. Caplains are classified as belonging to Clan CA by MEROPS and include six families: C1, C2, C10, C12, C28, and C47. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of pic

>cd08382 C2_Smurf-like C2 domain present in Smad ubiquitination-related factor (Smurf)-like proteins

Probab=99.80  E-value=1.1e-18  Score=142.56  Aligned_cols=116  Identities=23%  Similarity=0.417  Sum_probs=95.6

Q ss_pred             EEEEEEEEeecCCCCCCCCCCCCCcEEEEEEcCCceEEEEeecCCCCCCccccEEEEeeeCCCCCceEEEEEEeccCCCC
Q 021710           20 DLEITIICAKHLKNVNWRNGGDLKPYVVFYVDPAYRLATQSDDSGSTRPVWNERFTLPITHSVRESVLTLEIFHSKLSET   99 (308)
Q Consensus        20 ~L~VtIisAk~L~~~~~~~~~~~dPYv~v~l~~~~k~kT~v~k~gt~nP~WnE~f~f~l~~~~~~~~L~l~V~d~~~~~~   99 (308)
                      .|+|+|++|++|...+..+.  +||||++++++..+.+|+++++ +.||.|||+|.|.+..   ...|.|+|||++. ..
T Consensus         1 ~l~v~v~~A~~L~~~~~~~~--~dpyv~v~~~~~~~~kT~v~~~-t~nP~Wne~f~~~~~~---~~~l~i~V~d~~~-~~   73 (123)
T cd08382           1 KVRLTVLCADGLAKRDLFRL--PDPFAVITVDGGQTHSTDVAKK-TLDPKWNEHFDLTVGP---SSIITIQVFDQKK-FK   73 (123)
T ss_pred             CeEEEEEEecCCCccCCCCC--CCcEEEEEECCccceEccEEcC-CCCCcccceEEEEeCC---CCEEEEEEEECCC-CC
Confidence            48999999999998887764  9999999997667899999988 8999999999999965   5789999999884 33


Q ss_pred             C--CceeeeEEEeCcccccCCCCCCCceeEEEEEeCCC----CCCccEEEEEE
Q 021710          100 P--KPLVGSVKFPLAHLVDSDSSEPTQYVRKLEVLRPS----GRPQGKIRVKL  146 (308)
Q Consensus       100 ~--d~lLG~~~ipL~~L~~~~~~~~~~~~~~~~L~~~s----g~~~G~L~v~v  146 (308)
                      .  |++||++.|+|++|......    ...|++|+...    ++..|+|.+++
T Consensus        74 ~~~d~~lG~~~i~l~~l~~~~~~----~~~~~~l~~~~~~~~~~~~G~v~~~~  122 (123)
T cd08382          74 KKDQGFLGCVRIRANAVLPLKDT----GYQRLDLRKLKKSDNLSVRGKIVVSL  122 (123)
T ss_pred             CCCCceEeEEEEEHHHccccCCC----ccceeEeecCCCCCCceEeeEEEEEe
Confidence            2  68999999999999865432    24699996543    45589998876

A single C2 domain is found in Smurf proteins, C2-WW-HECT-domain E3s, which play an important role in the downregulation of the TGF-beta signaling pathway. Smurf proteins also regulate cell shape, motility, and polarity by degrading small guanosine triphosphatases (GTPases). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are

>cd08391 C2A_C2C_Synaptotagmin_like C2 domain first and third repeat in Synaptotagmin-like proteins

Probab=99.79  E-value=2.6e-18  Score=138.88  Aligned_cols=116  Identities=20%  Similarity=0.321  Sum_probs=97.1

Q ss_pred             cEEEEEEEEeecCCCCCCC-----CCCCCCcEEEEEEcCCceEEEEeecCCCCCCccccEEEEeeeCCCCCceEEEEEEe
Q 021710           19 HDLEITIICAKHLKNVNWR-----NGGDLKPYVVFYVDPAYRLATQSDDSGSTRPVWNERFTLPITHSVRESVLTLEIFH   93 (308)
Q Consensus        19 ~~L~VtIisAk~L~~~~~~-----~~~~~dPYv~v~l~~~~k~kT~v~k~gt~nP~WnE~f~f~l~~~~~~~~L~l~V~d   93 (308)
                      +.|+|+|++|++|...+..     .+ .+||||++.+.. .+.+|+++++ +.||+|||+|.|.+... ....|.|+|||
T Consensus         1 g~l~v~v~~a~~L~~~d~~~~~~~~g-~~dPyv~v~~~~-~~~kT~~~~~-t~~P~W~e~f~~~v~~~-~~~~l~i~v~d   76 (121)
T cd08391           1 GVLRIHVIEAQDLVAKDKFVGGLVKG-KSDPYVIVRVGA-QTFKSKVIKE-NLNPKWNEVYEAVVDEV-PGQELEIELFD   76 (121)
T ss_pred             CeEEEEEEEccCCcccccccccCCCC-CcCCEEEEEECC-EeEEccccCC-CCCCcccceEEEEeCCC-CCCEEEEEEEe
Confidence            4799999999999987642     12 589999999986 8899999998 99999999999998753 46789999999


Q ss_pred             ccCCCCCCceeeeEEEeCcccccCCCCCCCceeEEEEEeCCCCCCccEEEEEEEE
Q 021710           94 SKLSETPKPLVGSVKFPLAHLVDSDSSEPTQYVRKLEVLRPSGRPQGKIRVKLVL  148 (308)
Q Consensus        94 ~~~~~~~d~lLG~~~ipL~~L~~~~~~~~~~~~~~~~L~~~sg~~~G~L~v~v~~  148 (308)
                      ++. . .+++||.+.++|+++....     ....||+|.+   ..+|+|+++++|
T Consensus        77 ~~~-~-~~~~iG~~~i~l~~l~~~~-----~~~~w~~L~~---~~~G~~~~~~~~  121 (121)
T cd08391          77 EDP-D-KDDFLGRLSIDLGSVEKKG-----FIDEWLPLED---VKSGRLHLKLEW  121 (121)
T ss_pred             cCC-C-CCCcEEEEEEEHHHhcccC-----ccceEEECcC---CCCceEEEEEeC
Confidence            984 4 8899999999999998643     2359999963   368999999875

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular

>cd04014 C2_PKC_epsilon C2 domain in Protein Kinase C (PKC) epsilon

Probab=99.79  E-value=4.3e-18  Score=140.51  Aligned_cols=119  Identities=31%  Similarity=0.516  Sum_probs=98.2

Q ss_pred             cEEEEEEEEeecCCCCCCCC--------CCCCCcEEEEEEcCCceEEEEeecCCCCCCccccEEEEeeeCCCCCceEEEE
Q 021710           19 HDLEITIICAKHLKNVNWRN--------GGDLKPYVVFYVDPAYRLATQSDDSGSTRPVWNERFTLPITHSVRESVLTLE   90 (308)
Q Consensus        19 ~~L~VtIisAk~L~~~~~~~--------~~~~dPYv~v~l~~~~k~kT~v~k~gt~nP~WnE~f~f~l~~~~~~~~L~l~   90 (308)
                      +.|+|+|++|++|+..+...        .+.+||||+++++.....+|+++++ +.||.|||+|.|.+.+   ...|.|+
T Consensus         4 g~l~V~v~~a~~L~~~d~~~~~~~~~~~~g~~dpyv~v~~~~~~~~kT~~~~~-t~~P~Wne~f~~~v~~---~~~l~~~   79 (132)
T cd04014           4 GTLKIKICEAVDLKPTDWSTRHAVPKKGSQLLDPYVSIDVDDTHIGKTSTKPK-TNSPVWNEEFTTEVHN---GRNLELT   79 (132)
T ss_pred             eEEEEEEEEecCCCCCCchhhhcccccCccCcCcEEEEEECCEEEeEEeEcCC-CCCCCcceeEEEEcCC---CCEEEEE
Confidence            67999999999999877621        0158999999998766689999888 9999999999999974   5789999


Q ss_pred             EEeccCCCCCCceeeeEEEeCcccccCCCCCCCceeEEEEEeCCCCCCccEEEEEEEEcc
Q 021710           91 IFHSKLSETPKPLVGSVKFPLAHLVDSDSSEPTQYVRKLEVLRPSGRPQGKIRVKLVLNG  150 (308)
Q Consensus        91 V~d~~~~~~~d~lLG~~~ipL~~L~~~~~~~~~~~~~~~~L~~~sg~~~G~L~v~v~~~~  150 (308)
                      |||++. ...+++||++.|+|+++......   ....|++|.     ++|+|+|++.+..
T Consensus        80 v~d~~~-~~~~~~iG~~~i~l~~l~~~~~~---~~~~w~~L~-----~~G~l~l~~~~~~  130 (132)
T cd04014          80 VFHDAA-IGPDDFVANCTISFEDLIQRGSG---SFDLWVDLE-----PQGKLHVKIELKG  130 (132)
T ss_pred             EEeCCC-CCCCceEEEEEEEhHHhcccCCC---cccEEEEcc-----CCcEEEEEEEEec
Confidence            999873 56789999999999999874111   346899994     5799999999864

A single C2 domain is found in PKC epsilon. The PKC family of serine/threonine kinases regulates apoptosis, proliferation, migration, motility, chemo-resistance, and differentiation. There are 3 groups: group 1 (alpha, betaI, beta II, gamma) which require phospholipids and calcium, group 2 (delta, epsilon, theta, eta) which do not require calcium for activation, and group 3 (xi, iota/lambda) which are atypical and can be activated in the absence of diacylglycerol and calcium. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that

>cd04043 C2_Munc13_fungal C2 domain in Munc13 (mammalian uncoordinated) proteins; fungal group

Probab=99.78  E-value=7.1e-18  Score=137.72  Aligned_cols=122  Identities=19%  Similarity=0.272  Sum_probs=99.3

Q ss_pred             cEEEEEEEEeecCCCCCCCCCCCCCcEEEEEEcCC--ceEEEEeecCCCCCCccccEEEEeeeCCCCCceEEEEEEeccC
Q 021710           19 HDLEITIICAKHLKNVNWRNGGDLKPYVVFYVDPA--YRLATQSDDSGSTRPVWNERFTLPITHSVRESVLTLEIFHSKL   96 (308)
Q Consensus        19 ~~L~VtIisAk~L~~~~~~~~~~~dPYv~v~l~~~--~k~kT~v~k~gt~nP~WnE~f~f~l~~~~~~~~L~l~V~d~~~   96 (308)
                      +.|+|+|++|++|+..+..+  .+||||++.+...  .+.+|+++++ +.||+|||+|.|.+... ....|.|+|||++.
T Consensus         1 ~~~~V~v~~a~~L~~~~~~~--~~Dpyv~v~~~~~~~~~~kT~~~~~-t~~P~Wne~f~f~i~~~-~~~~L~i~v~d~d~   76 (126)
T cd04043           1 HLFTIRIVRAENLKADSSNG--LSDPYVTLVDTNGKRRIAKTRTIYD-TLNPRWDEEFELEVPAG-EPLWISATVWDRSF   76 (126)
T ss_pred             CEEEEEEEEeECCCCCCCCC--CCCceEEEEECCCCeeeecccEecC-CCCCcccceEEEEcCCC-CCCEEEEEEEECCC
Confidence            36899999999999988765  4999999998642  4689999988 89999999999999874 46789999999984


Q ss_pred             CCCCCceeeeEEEeCcccccCCCCCCCceeEEEEEeCCCCCCccEEEEEEEEccCC
Q 021710           97 SETPKPLVGSVKFPLAHLVDSDSSEPTQYVRKLEVLRPSGRPQGKIRVKLVLNGRP  152 (308)
Q Consensus        97 ~~~~d~lLG~~~ipL~~L~~~~~~~~~~~~~~~~L~~~sg~~~G~L~v~v~~~~~~  152 (308)
                       ..++++||++.++|.++....+..  ....|+.|.     .+|+|++++.+...+
T Consensus        77 -~~~~~~iG~~~i~l~~~~~~~~~~--~~~~w~~l~-----~~g~i~l~~~~~~~~  124 (126)
T cd04043          77 -VGKHDLCGRASLKLDPKRFGDDGL--PREIWLDLD-----TQGRLLLRVSMEGER  124 (126)
T ss_pred             -CCCCceEEEEEEecCHHHcCCCCC--CceEEEEcC-----CCCeEEEEEEEeeec
Confidence             558899999999999875533111  346899994     379999999987643

C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synap

>cd08395 C2C_Munc13 C2 domain third repeat in Munc13 (mammalian uncoordinated) proteins

Probab=99.78  E-value=2.4e-18  Score=140.29  Aligned_cols=105  Identities=18%  Similarity=0.241  Sum_probs=86.1

Q ss_pred             EEEEEEEEeecCCCCCCCCCCCCCcEEEEEEcC------CceEEEEeecCCCCCCccccEEEEeeeCC--CCCceEEEEE
Q 021710           20 DLEITIICAKHLKNVNWRNGGDLKPYVVFYVDP------AYRLATQSDDSGSTRPVWNERFTLPITHS--VRESVLTLEI   91 (308)
Q Consensus        20 ~L~VtIisAk~L~~~~~~~~~~~dPYv~v~l~~------~~k~kT~v~k~gt~nP~WnE~f~f~l~~~--~~~~~L~l~V   91 (308)
                      .|+|+|++|++|+..+. +  .+||||+|++..      .++.+|+++++ +.||+|||+|.|.+...  +....|.|.|
T Consensus         1 kL~V~Vi~A~~L~~~d~-g--~~DPYVkV~l~g~~~~~k~~k~kTkv~~~-tlnPvwNE~f~F~v~~~~~~~~~~L~~~V   76 (120)
T cd08395           1 KVTVKVVAANDLKWQTT-G--MFRPFVEVNLIGPHLSDKKRKFATKSKNN-NWSPKYNETFQFILGNEDDPESYELHICV   76 (120)
T ss_pred             CEEEEEEECcCCCcccC-C--CCCCEEEEEEecCCCcccccEeeeEEecC-CCCCccCcEEEEEeeCcCCCceeEEEEEE
Confidence            48999999999988763 4  599999999831      24678999977 99999999999999753  3456799999


Q ss_pred             EeccCCCCCCceeeeEEEeCcccccCCCCCCCceeEEEEEeCC
Q 021710           92 FHSKLSETPKPLVGSVKFPLAHLVDSDSSEPTQYVRKLEVLRP  134 (308)
Q Consensus        92 ~d~~~~~~~d~lLG~~~ipL~~L~~~~~~~~~~~~~~~~L~~~  134 (308)
                      ||++ ...++++||++.|+|+++....     ....|++|.++
T Consensus        77 ~D~d-~~~~dd~IG~~~l~l~~~~~~~-----~~~~w~~L~~~  113 (120)
T cd08395          77 KDYC-FARDDRLVGVTVLQLRDIAQAG-----SCACWLPLGRR  113 (120)
T ss_pred             EEec-ccCCCCEEEEEEEEHHHCcCCC-----cEEEEEECcCc
Confidence            9988 4567899999999999998654     34689999654

C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrevi

>cd08381 C2B_PI3K_class_II C2 domain second repeat present in class II phosphatidylinositol 3-kinases (PI3Ks)

Probab=99.77  E-value=2.3e-18  Score=140.68  Aligned_cols=104  Identities=22%  Similarity=0.341  Sum_probs=87.4

Q ss_pred             ccEEEEEEEEeecCCCCCCCCCCCCCcEEEEEEcC----CceEEEEeecCCCCCCccccEEEEee-e-CCCCCceEEEEE
Q 021710           18 THDLEITIICAKHLKNVNWRNGGDLKPYVVFYVDP----AYRLATQSDDSGSTRPVWNERFTLPI-T-HSVRESVLTLEI   91 (308)
Q Consensus        18 ~~~L~VtIisAk~L~~~~~~~~~~~dPYv~v~l~~----~~k~kT~v~k~gt~nP~WnE~f~f~l-~-~~~~~~~L~l~V   91 (308)
                      .+.|+|+|++|++|...+ .+  .+||||++++.+    ..+.+|+++++ +.||+|||+|.|.+ . ..+.+..|.|+|
T Consensus        12 ~~~L~V~Vi~A~~L~~~~-~~--~~DpyVkv~l~~~~~~~~~~kT~v~~~-~~nP~wnE~F~f~~~~~~~l~~~~L~~~V   87 (122)
T cd08381          12 NGTLFVMVMHAKNLPLLD-GS--DPDPYVKTYLLPDPQKTTKRKTKVVRK-TRNPTFNEMLVYDGLPVEDLQQRVLQVSV   87 (122)
T ss_pred             CCEEEEEEEEeeCCCCCC-CC--CCCCEEEEEEeeCCccCCceeCCccCC-CCCCCcccEEEEecCChHHhCCCEEEEEE
Confidence            478999999999999888 54  599999999964    35789999998 89999999999997 3 234567899999


Q ss_pred             EeccCCCCCCceeeeEEEeCcccccCCCCCCCceeEEEEE
Q 021710           92 FHSKLSETPKPLVGSVKFPLAHLVDSDSSEPTQYVRKLEV  131 (308)
Q Consensus        92 ~d~~~~~~~d~lLG~~~ipL~~L~~~~~~~~~~~~~~~~L  131 (308)
                      ||++ ...++++||++.|+|+++....     ....||.|
T Consensus        88 ~d~d-~~~~~~~lG~~~i~l~~l~~~~-----~~~~W~~L  121 (122)
T cd08381          88 WSHD-SLVENEFLGGVCIPLKKLDLSQ-----ETEKWYPL  121 (122)
T ss_pred             EeCC-CCcCCcEEEEEEEeccccccCC-----CccceEEC
Confidence            9998 4568999999999999998643     23589987

There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a N-terminal C2 domain, a PIK domain, and a kinase catalytic domain. Unlike class I and class III, class II PI3Ks have additionally a PX domain and a C-terminal C2 domain containing a nuclear localization signal both of which bind phospholipids though in a slightly different fashion. PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permut

>cd08690 C2_Freud-1 C2 domain found in 5' repressor element under dual repression binding protein-1 (Freud-1)

Probab=99.77  E-value=9.3e-18  Score=142.43  Aligned_cols=126  Identities=22%  Similarity=0.307  Sum_probs=98.6

Q ss_pred             EEEEEEEEeecCCCCCCCCCCCCCcEEEEEE----cCCceEEEEeecCCCCCCccccEEEEeeeCC-------CCCceEE
Q 021710           20 DLEITIICAKHLKNVNWRNGGDLKPYVVFYV----DPAYRLATQSDDSGSTRPVWNERFTLPITHS-------VRESVLT   88 (308)
Q Consensus        20 ~L~VtIisAk~L~~~~~~~~~~~dPYv~v~l----~~~~k~kT~v~k~gt~nP~WnE~f~f~l~~~-------~~~~~L~   88 (308)
                      .++|+|+.|++++.......+.+||||++++    +...+.||+++++ |.||+|||+|.|.+...       +....|.
T Consensus         3 ~~el~i~~~~~~~l~~~~~~~~~DpYVk~~l~~p~~~~~k~KT~v~k~-TlnPvfNE~f~f~I~~~~~~~~R~l~~~~L~   81 (155)
T cd08690           3 SIELTIVRCIGIPLPSGWNPKDLDTYVKFEFPYPNEEPQSGKTSTIKD-TNSPEYNESFKLNINRKHRSFQRVFKRHGLK   81 (155)
T ss_pred             ceEEEEEEeeccccCCCcCCCCCCeEEEEEEecCCCCCceeecCcccC-CCCCcccceEEEEeccccchhhhhccCCcEE
Confidence            4678888888864332221126999999997    3346999999999 99999999999999653       2356799


Q ss_pred             EEEEeccCCCCCCceeeeEEEeCcccccCCCCCCCceeEEEEEeCCCCCCccEEEEEEEEccC
Q 021710           89 LEIFHSKLSETPKPLVGSVKFPLAHLVDSDSSEPTQYVRKLEVLRPSGRPQGKIRVKLVLNGR  151 (308)
Q Consensus        89 l~V~d~~~~~~~d~lLG~~~ipL~~L~~~~~~~~~~~~~~~~L~~~sg~~~G~L~v~v~~~~~  151 (308)
                      |+|||.+.....|++||++.|+|..+......     ..|++|++......|+|+|+|++++.
T Consensus        82 ~~V~d~~~f~~~D~~iG~~~i~L~~l~~~~~~-----~~~~~L~~~~k~~Gg~l~v~ir~r~p  139 (155)
T cd08690          82 FEVYHKGGFLRSDKLLGTAQVKLEPLETKCEI-----HESVDLMDGRKATGGKLEVKVRLREP  139 (155)
T ss_pred             EEEEeCCCcccCCCeeEEEEEEcccccccCcc-----eEEEEhhhCCCCcCCEEEEEEEecCC
Confidence            99999984234799999999999999765432     46999986555568999999999875

Freud-1 is a novel calcium-regulated repressor that negatively regulates basal 5-HT1A receptor expression in neurons. It may also play a role in the altered regulation of 5-HT1A receptors associated with anxiety or major depression. Freud-1 contains two DM-14 basic repeats, a helix-loop-helix DNA binding domain, and a C2 domain. The Freud-1 C2 domain is thought to be calcium insensitive and it lacks several acidic residues that mediate calcium binding of the PKC C2 domain. In addition, it contains a poly-basic insert that is not present in calcium-dependent C2 domains and may function as a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules tha

>cd08677 C2A_Synaptotagmin-13 C2 domain

Probab=99.77  E-value=3e-18  Score=138.83  Aligned_cols=96  Identities=17%  Similarity=0.258  Sum_probs=82.0

Q ss_pred             cccEEEEEEEEeecCCCCCCCCCCCCCcEEEEEEcC---CceEEEEeecCCCCCCccccEEEEeeeCC-CCCceEEEEEE
Q 021710           17 ITHDLEITIICAKHLKNVNWRNGGDLKPYVVFYVDP---AYRLATQSDDSGSTRPVWNERFTLPITHS-VRESVLTLEIF   92 (308)
Q Consensus        17 ~~~~L~VtIisAk~L~~~~~~~~~~~dPYv~v~l~~---~~k~kT~v~k~gt~nP~WnE~f~f~l~~~-~~~~~L~l~V~   92 (308)
                      ..+.|+|+|++|++|+ .  .+  .+||||++++.+   ..+++|++.++ |.||+|||+|.|.+... +.+.+|.|.||
T Consensus        12 ~~~~L~V~vikA~~L~-~--~g--~sDPYVKv~L~~~~k~~k~kT~v~rk-tlnPvfnE~f~F~v~~~~l~~~tL~~~V~   85 (118)
T cd08677          12 QKAELHVNILEAENIS-V--DA--GCECYISGCVSVSEGQKEAQTALKKL-ALHTQWEEELVFPLPEEESLDGTLTLTLR   85 (118)
T ss_pred             cCCEEEEEEEEecCCC-C--CC--CCCeEEEEEEcCCcCccEEEcceecC-CCCCccccEEEEeCCHHHhCCcEEEEEEE
Confidence            3589999999999998 2  23  499999999964   25889999999 99999999999998763 56788999999


Q ss_pred             eccCCCCCCceeeeEEEeCcccccCCC
Q 021710           93 HSKLSETPKPLVGSVKFPLAHLVDSDS  119 (308)
Q Consensus        93 d~~~~~~~d~lLG~~~ipL~~L~~~~~  119 (308)
                      |.| +.+++++||++.++|+++....+
T Consensus        86 d~D-rfs~~d~IG~v~l~l~~~~~~~~  111 (118)
T cd08677          86 CCD-RFSRHSTLGELRLKLADVSMMLG  111 (118)
T ss_pred             eCC-CCCCCceEEEEEEccccccCCcc
Confidence            999 57899999999999998755443

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 13, a member of class 6 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmins 8 and 12, does not have any consensus Ca2+ binding sites. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domain

>cd04017 C2D_Ferlin C2 domain fourth repeat in Ferlin

Probab=99.77  E-value=1.5e-17  Score=137.95  Aligned_cols=125  Identities=14%  Similarity=0.209  Sum_probs=98.2

Q ss_pred             cEEEEEEEEeecCCCCCCCCCCCCCcEEEEEEcCCceEEEEeecCCCCCCccccEEEEeeeCC------C--CCceEEEE
Q 021710           19 HDLEITIICAKHLKNVNWRNGGDLKPYVVFYVDPAYRLATQSDDSGSTRPVWNERFTLPITHS------V--RESVLTLE   90 (308)
Q Consensus        19 ~~L~VtIisAk~L~~~~~~~~~~~dPYv~v~l~~~~k~kT~v~k~gt~nP~WnE~f~f~l~~~------~--~~~~L~l~   90 (308)
                      +.|+|+|++|++|...+..+.  +||||++.+.. .+.+|+++++ +.||+|||.|.|.+...      .  ....|.|+
T Consensus         1 ~~l~v~V~~a~~L~~~d~~g~--~dpyv~v~~~~-~~~kT~v~~~-t~nP~Wne~~~f~~~~~~~~~~~~~~~~~~l~v~   76 (135)
T cd04017           1 FQLRAYIYQARDLLAADKSGL--SDPFARVSFLN-QSQETEVIKE-TLSPTWDQTLIFDEVELYGSPEEIAQNPPLVVVE   76 (135)
T ss_pred             CEEEEEEEEeecCcCCCCCCC--CCCEEEEEECC-eeeEeeeEcC-CCCCccCcEEEEeeeeccCChHHhhcCCCEEEEE
Confidence            479999999999998887764  99999999975 7889999998 99999999999985321      0  13579999


Q ss_pred             EEeccCCCCCCceeeeEEE-eCcccccCCCCCCCceeEEEEEeCCCCCCccEEEEEEEEccC
Q 021710           91 IFHSKLSETPKPLVGSVKF-PLAHLVDSDSSEPTQYVRKLEVLRPSGRPQGKIRVKLVLNGR  151 (308)
Q Consensus        91 V~d~~~~~~~d~lLG~~~i-pL~~L~~~~~~~~~~~~~~~~L~~~sg~~~G~L~v~v~~~~~  151 (308)
                      |||++. ..+|++||++.+ ++..+......  .....|+.|. ..++.+|+|.|++.+.+.
T Consensus        77 V~d~d~-~~~d~~iG~~~i~~~~~~~~~~~~--~~~~~W~~L~-~~~~~~Geil~~~~~~~~  134 (135)
T cd04017          77 LFDQDS-VGKDEFLGRSVAKPLVKLDLEEDF--PPKLQWFPIY-KGGQSAGELLAAFELIEV  134 (135)
T ss_pred             EEeCcC-CCCCccceEEEeeeeeecccCCCC--CCCceEEEee-cCCCchhheeEEeEEEEe
Confidence            999983 568899999987 54444432111  1457999997 456689999999998753

Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangeme

>KOG1030 consensus Predicted Ca2+-dependent phospholipid-binding protein [General function prediction only]

Probab=99.77  E-value=2.1e-18  Score=145.72  Aligned_cols=94  Identities=20%  Similarity=0.402  Sum_probs=85.5

Q ss_pred             ccEEEEEEEEeecCCCCCCCCCCCCCcEEEEEEcCCceEEEEeecCCCCCCccccEEEEeeeCCCCCceEEEEEEeccCC
Q 021710           18 THDLEITIICAKHLKNVNWRNGGDLKPYVVFYVDPAYRLATQSDDSGSTRPVWNERFTLPITHSVRESVLTLEIFHSKLS   97 (308)
Q Consensus        18 ~~~L~VtIisAk~L~~~~~~~~~~~dPYv~v~l~~~~k~kT~v~k~gt~nP~WnE~f~f~l~~~~~~~~L~l~V~d~~~~   97 (308)
                      .+.|+|+|+++.||..+|+.++  +||||++.+.+ ++.+|+++++ ++||+|||+|+|.+.+  ....|+++|||+|. 
T Consensus         5 vGLL~v~v~~g~~L~~rD~~~s--SDPyVVl~lg~-q~lkT~~v~~-n~NPeWNe~ltf~v~d--~~~~lkv~VyD~D~-   77 (168)
T KOG1030|consen    5 VGLLRVRVKRGKNLAIRDFLGS--SDPYVVLELGN-QKLKTRVVYK-NLNPEWNEELTFTVKD--PNTPLKVTVYDKDT-   77 (168)
T ss_pred             ceEEEEEEEeecCeeeeccccC--CCCeEEEEECC-eeeeeeeecC-CCCCcccceEEEEecC--CCceEEEEEEeCCC-
Confidence            3789999999999999998654  99999999997 8999999998 8999999999999998  47889999999994 


Q ss_pred             CCCCceeeeEEEeCcccccCC
Q 021710           98 ETPKPLVGSVKFPLAHLVDSD  118 (308)
Q Consensus        98 ~~~d~lLG~~~ipL~~L~~~~  118 (308)
                      +..|+|||.|.|+|+.++...
T Consensus        78 fs~dD~mG~A~I~l~p~~~~~   98 (168)
T KOG1030|consen   78 FSSDDFMGEATIPLKPLLEAQ   98 (168)
T ss_pred             CCcccccceeeeccHHHHHHh
Confidence            789999999999999998754

>cd08392 C2A_SLP-3 C2 domain first repeat present in Synaptotagmin-like protein 3

Probab=99.77  E-value=4.8e-18  Score=140.06  Aligned_cols=109  Identities=24%  Similarity=0.341  Sum_probs=89.6

Q ss_pred             ccEEEEEEEEeecCCCCCCCCCCCCCcEEEEEEcCC----ceEEEEeecCCCCCCccccEEEEeeeC-CCCCceEEEEEE
Q 021710           18 THDLEITIICAKHLKNVNWRNGGDLKPYVVFYVDPA----YRLATQSDDSGSTRPVWNERFTLPITH-SVRESVLTLEIF   92 (308)
Q Consensus        18 ~~~L~VtIisAk~L~~~~~~~~~~~dPYv~v~l~~~----~k~kT~v~k~gt~nP~WnE~f~f~l~~-~~~~~~L~l~V~   92 (308)
                      .+.|+|+|++|+||...+...+ .+||||++.+.+.    .+.||+++++ +.||+|||+|.|.+.. .+.+..|.|.||
T Consensus        14 ~~~L~V~V~~a~nL~~~d~~~g-~~dpYVkv~llp~~~~~~k~kT~v~~~-t~nPvfNE~F~f~v~~~~l~~~~L~v~V~   91 (128)
T cd08392          14 TSCLEITIKACRNLAYGDEKKK-KCHPYVKVCLLPDKSHNSKRKTAVKKG-TVNPVFNETLKYVVEADLLSSRQLQVSVW   91 (128)
T ss_pred             CCEEEEEEEecCCCCccCCCCC-CCCeEEEEEEEeCCcccceeecccccC-CCCCccceEEEEEcCHHHhCCcEEEEEEE
Confidence            4789999999999998876422 5999999999653    3789999998 9999999999999865 345679999999


Q ss_pred             eccCCCCCCceeeeEEEeCcccccCCCCCCCceeEEEEE
Q 021710           93 HSKLSETPKPLVGSVKFPLAHLVDSDSSEPTQYVRKLEV  131 (308)
Q Consensus        93 d~~~~~~~d~lLG~~~ipL~~L~~~~~~~~~~~~~~~~L  131 (308)
                      |.+ ...++++||++.|+|.++.......  ....||+|
T Consensus        92 ~~~-~~~~~~~lG~~~i~L~~~~~~~~~~--~~~~W~~l  127 (128)
T cd08392          92 HSR-TLKRRVFLGEVLIPLADWDFEDTDS--QRFLWYPL  127 (128)
T ss_pred             eCC-CCcCcceEEEEEEEcCCcccCCCCc--cccceEEC
Confidence            988 3568899999999999996543221  45789987

All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. SHD of Slp (except for the Slp4-SHD) function as a specific Rab27A/B-binding domain. In addition to Slp, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. Little is known about the expression or localization of Slp3. The C2A domain of Slp3 is Ca2+ dependent. It has been demonstrated that Slp3 promotes dense-core vesicle exocytosis. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids

>cd08373 C2A_Ferlin C2 domain first repeat in Ferlin

Probab=99.77  E-value=1.3e-17  Score=136.67  Aligned_cols=115  Identities=20%  Similarity=0.304  Sum_probs=97.4

Q ss_pred             EEEeecCCCCCCCCCCCCCcEEEEEEcCCceEEEEeecCCCCCCccccEEEEeeeCC-CCCceEEEEEEeccCCCCCCce
Q 021710           25 IICAKHLKNVNWRNGGDLKPYVVFYVDPAYRLATQSDDSGSTRPVWNERFTLPITHS-VRESVLTLEIFHSKLSETPKPL  103 (308)
Q Consensus        25 IisAk~L~~~~~~~~~~~dPYv~v~l~~~~k~kT~v~k~gt~nP~WnE~f~f~l~~~-~~~~~L~l~V~d~~~~~~~d~l  103 (308)
                      |++|++|+.  ..+  .+||||++.+.. .+.+|+++++ +.||+|||+|.|.+... .....|.|+|||++. ...+++
T Consensus         2 vi~a~~L~~--~~g--~~Dpyv~v~~~~-~~~kT~v~~~-~~nP~Wne~f~f~~~~~~~~~~~l~~~v~d~~~-~~~d~~   74 (127)
T cd08373           2 VVSLKNLPG--LKG--KGDRIAKVTFRG-VKKKTRVLEN-ELNPVWNETFEWPLAGSPDPDESLEIVVKDYEK-VGRNRL   74 (127)
T ss_pred             eEEeeCCcc--cCC--CCCCEEEEEECC-EeeecceeCC-CcCCcccceEEEEeCCCcCCCCEEEEEEEECCC-CCCCce
Confidence            789999998  444  499999999976 6889999998 89999999999999753 356789999999983 568899


Q ss_pred             eeeEEEeCcccccCCCCCCCceeEEEEEeCCCCCC-ccEEEEEEEEccC
Q 021710          104 VGSVKFPLAHLVDSDSSEPTQYVRKLEVLRPSGRP-QGKIRVKLVLNGR  151 (308)
Q Consensus       104 LG~~~ipL~~L~~~~~~~~~~~~~~~~L~~~sg~~-~G~L~v~v~~~~~  151 (308)
                      ||++.++|+++....     ....|++|.+.+++. .|+|++++.|.+.
T Consensus        75 iG~~~~~l~~l~~~~-----~~~~~~~L~~~~~~~~~~~l~l~~~~~~~  118 (127)
T cd08373          75 IGSATVSLQDLVSEG-----LLEVTEPLLDSNGRPTGATISLEVSYQPP  118 (127)
T ss_pred             EEEEEEEhhHcccCC-----ceEEEEeCcCCCCCcccEEEEEEEEEeCC
Confidence            999999999998643     346899998776664 7999999999875

Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen

>cd04028 C2B_RIM1alpha C2 domain second repeat contained in Rab3-interacting molecule (RIM) proteins

Probab=99.77  E-value=9e-18  Score=141.31  Aligned_cols=106  Identities=16%  Similarity=0.234  Sum_probs=87.7

Q ss_pred             ccEEEEEEEEeecCCCCC-CCCCCCCCcEEEEEEcCC----ceEEEEeecCCCCCCccccEEEEeeeCCCCCceEEEEEE
Q 021710           18 THDLEITIICAKHLKNVN-WRNGGDLKPYVVFYVDPA----YRLATQSDDSGSTRPVWNERFTLPITHSVRESVLTLEIF   92 (308)
Q Consensus        18 ~~~L~VtIisAk~L~~~~-~~~~~~~dPYv~v~l~~~----~k~kT~v~k~gt~nP~WnE~f~f~l~~~~~~~~L~l~V~   92 (308)
                      .+.|+|+|++|+||...+ ..+  .+||||++++.+.    .+.||+++++ +.||+|||+|.|.+.  +.+..|.|+||
T Consensus        28 ~~~L~V~Vi~ArnL~~~~~~~g--~sDPYVKv~Llp~~~~~~k~KT~v~kk-tlnPvfNE~F~f~v~--l~~~~L~v~V~  102 (146)
T cd04028          28 KGQLEVEVIRARGLVQKPGSKV--LPAPYVKVYLLEGKKCIAKKKTKIARK-TLDPLYQQQLVFDVS--PTGKTLQVIVW  102 (146)
T ss_pred             CCEEEEEEEEeeCCCcccCCCC--CcCCeEEEEEECCCccccceeceecCC-CCCCccCCeEEEEEc--CCCCEEEEEEE
Confidence            588999999999998764 333  4899999999653    3889999998 999999999999998  36789999999


Q ss_pred             e-ccCCCCCCceeeeEEEeCcccccCCCCCCCceeEEEEEeCC
Q 021710           93 H-SKLSETPKPLVGSVKFPLAHLVDSDSSEPTQYVRKLEVLRP  134 (308)
Q Consensus        93 d-~~~~~~~d~lLG~~~ipL~~L~~~~~~~~~~~~~~~~L~~~  134 (308)
                      + ++ ...++++||++.|+|+++....     ....||+|...
T Consensus       103 ~d~~-~~~~~~~iG~~~i~L~~l~~~~-----~~~~Wy~L~~~  139 (146)
T cd04028         103 GDYG-RMDKKVFMGVAQILLDDLDLSN-----LVIGWYKLFPT  139 (146)
T ss_pred             eCCC-CCCCCceEEEEEEEcccccCCC-----CceeEEecCCc
Confidence            5 55 4568899999999999985433     23589999754

RIMs are believed to organize specialized sites of the plasma membrane called active zones. They also play a role in controlling neurotransmitter release, plasticity processes, as well as memory and learning. RIM contains an N-terminal zinc finger domain, a PDZ domain, and two C-terminal C2 domains (C2A, C2B). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as

>cd04039 C2_PSD C2 domain present in Phosphatidylserine decarboxylase (PSD)

Probab=99.76  E-value=6.6e-18  Score=135.18  Aligned_cols=98  Identities=14%  Similarity=0.241  Sum_probs=82.8

Q ss_pred             cEEEEEEEEeecCCCCCCCC--CCCCCcEEEEEEcCCceEEEEeecCCCCCCccccEEEEeeeCCCCCceEEEEEEeccC
Q 021710           19 HDLEITIICAKHLKNVNWRN--GGDLKPYVVFYVDPAYRLATQSDDSGSTRPVWNERFTLPITHSVRESVLTLEIFHSKL   96 (308)
Q Consensus        19 ~~L~VtIisAk~L~~~~~~~--~~~~dPYv~v~l~~~~k~kT~v~k~gt~nP~WnE~f~f~l~~~~~~~~L~l~V~d~~~   96 (308)
                      ++|.|+|++|++|+..+...  +..+||||++.+.. .++||+++++ +.||+|||+|.|.+........|.|+|||++ 
T Consensus         1 g~l~v~v~~A~~L~~~~~~~~~~~~~DPYv~v~~~~-~~~kT~v~~~-t~nPvWne~f~f~v~~~~~~~~L~~~V~D~d-   77 (108)
T cd04039           1 GVVFMEIKSITDLPPLKNMTRTGFDMDPFVIISFGR-RVFRTSWRRH-TLNPVFNERLAFEVYPHEKNFDIQFKVLDKD-   77 (108)
T ss_pred             CEEEEEEEeeeCCCCccccCCCCCccCceEEEEECC-EeEeeeeecC-CCCCcccceEEEEEeCccCCCEEEEEEEECC-
Confidence            57999999999999876432  11489999999975 7889999999 8999999999999876434568999999998 


Q ss_pred             CCCCCceeeeEEEeCcccccCCC
Q 021710           97 SETPKPLVGSVKFPLAHLVDSDS  119 (308)
Q Consensus        97 ~~~~d~lLG~~~ipL~~L~~~~~  119 (308)
                      ..++|++||++.|+|++|+....
T Consensus        78 ~~~~dd~IG~~~l~L~~l~~~~~  100 (108)
T cd04039          78 KFSFNDYVATGSLSVQELLNAAP  100 (108)
T ss_pred             CCCCCcceEEEEEEHHHHHhhCC
Confidence            46789999999999999987654

PSD is involved in the biosynthesis of aminophospholipid by converting phosphatidylserine (PtdSer) to phosphatidylethanolamine (PtdEtn). There is a single C2 domain present and it is thought to confer PtdSer binding motif that is common to PKC and synaptotagmin. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM

>cd04010 C2B_RasA3 C2 domain second repeat present in RAS p21 protein activator 3 (RasA3)

Probab=99.76  E-value=5.8e-18  Score=142.92  Aligned_cols=117  Identities=17%  Similarity=0.276  Sum_probs=91.5

Q ss_pred             EEEEEEEEeecCCCCCCCCCCCCCcEEEEEEcCC----ceEEEEeecCCCCCCccccEEEEeeeC--------------C
Q 021710           20 DLEITIICAKHLKNVNWRNGGDLKPYVVFYVDPA----YRLATQSDDSGSTRPVWNERFTLPITH--------------S   81 (308)
Q Consensus        20 ~L~VtIisAk~L~~~~~~~~~~~dPYv~v~l~~~----~k~kT~v~k~gt~nP~WnE~f~f~l~~--------------~   81 (308)
                      .|+|+|++|++|..  ..+  .+||||+|.+...    .+.+|+++++ +.||+|||+|.|.+..              .
T Consensus         1 kL~V~Vi~ArnL~~--~~g--~sDPYV~V~l~~~~~k~~~~kT~v~~~-t~nP~wNE~F~F~v~~~~~~~~~~~~~~~~~   75 (148)
T cd04010           1 KLSVRVIECSDLAL--KNG--TCDPYASVTLIYSNKKQDTKRTKVKKK-TNNPQFDEAFYFDVTIDSSPEKKQFEMPEED   75 (148)
T ss_pred             CEEEEEEeCcCCCC--CCC--CCCceEEEEEeCCcccCcccCCccEeC-CCCCccceEEEEEEecccccccccccCCccc
Confidence            38999999999987  233  5999999999752    5789999998 9999999999999851              1


Q ss_pred             CCCceEEEEEEeccCCCCCCceeeeEEEeCcccccCCCCCCCceeEEEEEeCCCCC------------CccEEEEEE
Q 021710           82 VRESVLTLEIFHSKLSETPKPLVGSVKFPLAHLVDSDSSEPTQYVRKLEVLRPSGR------------PQGKIRVKL  146 (308)
Q Consensus        82 ~~~~~L~l~V~d~~~~~~~d~lLG~~~ipL~~L~~~~~~~~~~~~~~~~L~~~sg~------------~~G~L~v~v  146 (308)
                      +....|.|+|||++. ...++|||++.|+|.+|.....    ....||+|...+.+            ..|+|+++|
T Consensus        76 ~~~~~L~i~V~d~~~-~~~ddfLG~v~i~l~~l~~~~~----~~~~W~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~  147 (148)
T cd04010          76 AEKLELRVDLWHASM-GGGDVFLGEVRIPLRGLDLQAG----SHQAWYFLQPREEKSTPPGTRSSKDNSLGSLRLKI  147 (148)
T ss_pred             ccEEEEEEEEEcCCC-CCCCceeEEEEEecccccccCC----cCcceeecCCcccccCCCCCcccccCCcccEEEec
Confidence            234679999999984 4689999999999999887511    23589999754322            267888775

RasA3 are members of GTPase activating protein 1 (GAP1), a Ras-specific GAP, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. RasA3 contains an N-terminal C2 domain, a Ras-GAP domain, a plextrin homology (PH)-like domain, and a Bruton's Tyrosine Kinase (BTK) zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain

>cd04029 C2A_SLP-4_5 C2 domain first repeat present in Synaptotagmin-like proteins 4 and 5

Probab=99.76  E-value=1.2e-17  Score=137.07  Aligned_cols=108  Identities=23%  Similarity=0.346  Sum_probs=88.6

Q ss_pred             cccEEEEEEEEeecCCCCCCCCCCCCCcEEEEEEcC----CceEEEEeecCCCCCCccccEEEEeeeCC-CCCceEEEEE
Q 021710           17 ITHDLEITIICAKHLKNVNWRNGGDLKPYVVFYVDP----AYRLATQSDDSGSTRPVWNERFTLPITHS-VRESVLTLEI   91 (308)
Q Consensus        17 ~~~~L~VtIisAk~L~~~~~~~~~~~dPYv~v~l~~----~~k~kT~v~k~gt~nP~WnE~f~f~l~~~-~~~~~L~l~V   91 (308)
                      ..+.|+|+|++|+||...+...+ .+||||++.+.+    ..+.||+++++ +.||+|||+|.|.+... +.+..|.|+|
T Consensus        13 ~~~~L~V~Vi~a~~L~~~~~~~~-~~DpyVkv~l~p~~~~~~~~kT~v~~~-t~nP~wnE~f~f~i~~~~l~~~~L~~~V   90 (125)
T cd04029          13 KTQSLNVHVKECRNLAYGDEAKK-RSNPYVKTYLLPDKSRQSKRKTSIKRN-TTNPVYNETLKYSISHSQLETRTLQLSV   90 (125)
T ss_pred             CCCeEEEEEEEecCCCccCCCCC-CCCcEEEEEEEcCCccccceEeeeeeC-CCCCcccceEEEECCHHHhCCCEEEEEE
Confidence            35789999999999987764322 599999999964    24689999988 99999999999998653 4567899999


Q ss_pred             EeccCCCCCCceeeeEEEeCcccccCCCCCCCceeEEEEEe
Q 021710           92 FHSKLSETPKPLVGSVKFPLAHLVDSDSSEPTQYVRKLEVL  132 (308)
Q Consensus        92 ~d~~~~~~~d~lLG~~~ipL~~L~~~~~~~~~~~~~~~~L~  132 (308)
                      ||++ ...++++||++.|+|.++.....     ...|++|.
T Consensus        91 ~d~~-~~~~~~~lG~~~i~l~~~~~~~~-----~~~w~~l~  125 (125)
T cd04029          91 WHYD-RFGRNTFLGEVEIPLDSWNFDSQ-----HEECLPLH  125 (125)
T ss_pred             EECC-CCCCCcEEEEEEEeCCcccccCC-----cccEEECc
Confidence            9998 46788999999999999976543     35899873

All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. SHD of Slp (except for the Slp4-SHD) function as a specific Rab27A/B-binding domain. In addition to Slp, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. It has been demonstrated that Slp4/granuphilin promotes dense-core vesicle exocytosis. The C2A domain of Slp4 is Ca2+ dependent. Slp5 mRNA has been shown to be restricted to human placenta and liver suggesting a role in Rab27A-dependent membrane trafficking in specific tissues. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2

>cd04021 C2_E3_ubiquitin_ligase C2 domain present in E3 ubiquitin ligase

Probab=99.76  E-value=2.8e-17  Score=134.68  Aligned_cols=120  Identities=24%  Similarity=0.380  Sum_probs=96.3

Q ss_pred             cEEEEEEEEeecCCCCCCCCCCCCCcEEEEEEcCCceEEEEeecCCCCCCccccEEEEeeeCCCCCceEEEEEEeccCCC
Q 021710           19 HDLEITIICAKHLKNVNWRNGGDLKPYVVFYVDPAYRLATQSDDSGSTRPVWNERFTLPITHSVRESVLTLEIFHSKLSE   98 (308)
Q Consensus        19 ~~L~VtIisAk~L~~~~~~~~~~~dPYv~v~l~~~~k~kT~v~k~gt~nP~WnE~f~f~l~~~~~~~~L~l~V~d~~~~~   98 (308)
                      .+|+|+|++|+ |...+..+  .+||||+++++...+.+|+++++ +.||+|||+|.|.+..   ...|.|+|||++ ..
T Consensus         2 ~~L~V~i~~a~-l~~~~~~~--~~dPyv~v~~~~~~~~kT~v~~~-t~~P~Wne~f~~~~~~---~~~l~~~V~d~~-~~   73 (125)
T cd04021           2 SQLQITVESAK-LKSNSKSF--KPDPYVEVTVDGQPPKKTEVSKK-TSNPKWNEHFTVLVTP---QSTLEFKVWSHH-TL   73 (125)
T ss_pred             ceEEEEEEeeE-CCCCCcCC--CCCeEEEEEECCcccEEeeeeCC-CCCCccccEEEEEeCC---CCEEEEEEEeCC-CC
Confidence            47999999999 54444455  49999999998645899999987 8999999999999864   468999999998 45


Q ss_pred             CCCceeeeEEEeCcccccCCCCCCCceeEEEEEeCCC---CCCccEEEEEE
Q 021710           99 TPKPLVGSVKFPLAHLVDSDSSEPTQYVRKLEVLRPS---GRPQGKIRVKL  146 (308)
Q Consensus        99 ~~d~lLG~~~ipL~~L~~~~~~~~~~~~~~~~L~~~s---g~~~G~L~v~v  146 (308)
                      ..+++||++.++|.++.............|++|.+++   +...|+|.+++
T Consensus        74 ~~~~~iG~~~i~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~  124 (125)
T cd04021          74 KADVLLGEASLDLSDILKNHNGKLENVKLTLNLSSENKGSSVKVGELTVIL  124 (125)
T ss_pred             CCCcEEEEEEEEHHHhHhhcCCCccceEEEEEEEccCCCcceeeeeEEEEe
Confidence            6889999999999999875443322335699998654   35689999876

E3 ubiquitin ligase is part of the ubiquitylation mechanism responsible for controlling surface expression of membrane proteins. The sequential action of several enzymes are involved: ubiquitin-activating enzyme E1, ubiquitin-conjugating enzyme E2, and ubiquitin-protein ligase E3 which is responsible for substrate recognition and promoting the transfer of ubiquitin to the target protein. E3 ubiquitin ligase is composed of an N-terminal C2 domain, 4 WW domains, and a HECTc domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction e

>cd04040 C2D_Tricalbin-like C2 domain fourth repeat present in Tricalbin-like proteins

Probab=99.76  E-value=1.8e-17  Score=133.09  Aligned_cols=114  Identities=24%  Similarity=0.436  Sum_probs=96.4

Q ss_pred             EEEEEEEeecCCCCCCCCCCCCCcEEEEEEcCCceEEEEeecCCCCCCccccEEEEeeeCCCCCceEEEEEEeccCCCCC
Q 021710           21 LEITIICAKHLKNVNWRNGGDLKPYVVFYVDPAYRLATQSDDSGSTRPVWNERFTLPITHSVRESVLTLEIFHSKLSETP  100 (308)
Q Consensus        21 L~VtIisAk~L~~~~~~~~~~~dPYv~v~l~~~~k~kT~v~k~gt~nP~WnE~f~f~l~~~~~~~~L~l~V~d~~~~~~~  100 (308)
                      |+|+|++|++|...+..+  .+||||++.++.....+|+++++ +.+|+|||+|.|.+... ....|.|+|||++. ..+
T Consensus         1 l~v~vi~a~~L~~~~~~~--~~dpyv~v~~~~~~~~~T~v~~~-~~~P~Wne~f~~~~~~~-~~~~l~~~v~d~~~-~~~   75 (115)
T cd04040           1 LTVDVISAENLPSADRNG--KSDPFVKFYLNGEKVFKTKTIKK-TLNPVWNESFEVPVPSR-VRAVLKVEVYDWDR-GGK   75 (115)
T ss_pred             CEEEEEeeeCCCCCCCCC--CCCCeEEEEECCCcceeeceecC-CCCCcccccEEEEeccC-CCCEEEEEEEeCCC-CCC
Confidence            589999999999888765  49999999998766789999987 99999999999998764 46789999999983 568


Q ss_pred             CceeeeEEEeCcccccCCCCCCCceeEEEEEeCCCCCCccEEEE
Q 021710          101 KPLVGSVKFPLAHLVDSDSSEPTQYVRKLEVLRPSGRPQGKIRV  144 (308)
Q Consensus       101 d~lLG~~~ipL~~L~~~~~~~~~~~~~~~~L~~~sg~~~G~L~v  144 (308)
                      +++||++.+++.++..+.     ....|++|....+...|.|.+
T Consensus        76 ~~~iG~~~~~l~~l~~~~-----~~~~~~~L~~~g~~~~~~~~~  114 (115)
T cd04040          76 DDLLGSAYIDLSDLEPEE-----TTELTLPLDGQGGGKLGAVFL  114 (115)
T ss_pred             CCceEEEEEEHHHcCCCC-----cEEEEEECcCCCCccCceEEc
Confidence            899999999999987643     457899998777777888754

5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain.

>cd04050 C2B_Synaptotagmin-like C2 domain second repeat present in Synaptotagmin-like proteins

Probab=99.75  E-value=9.9e-18  Score=133.04  Aligned_cols=102  Identities=22%  Similarity=0.347  Sum_probs=87.0

Q ss_pred             EEEEEEEEeecCCCCCCCCCCCCCcEEEEEEcCCceEEEEeecCCCCCCccccEEEEeeeCCCCCceEEEEEEeccCCCC
Q 021710           20 DLEITIICAKHLKNVNWRNGGDLKPYVVFYVDPAYRLATQSDDSGSTRPVWNERFTLPITHSVRESVLTLEIFHSKLSET   99 (308)
Q Consensus        20 ~L~VtIisAk~L~~~~~~~~~~~dPYv~v~l~~~~k~kT~v~k~gt~nP~WnE~f~f~l~~~~~~~~L~l~V~d~~~~~~   99 (308)
                      .|.|+|++|++|+..+..+  .+||||++.+.. .+.+|+++++ +.||+|||+|.|.+... ....|.|+|||++.   
T Consensus         1 ~L~V~v~~A~~L~~~~~~~--~~dpyv~v~~~~-~~~kT~v~~~-t~nP~Wne~f~f~v~~~-~~~~l~v~v~d~~~---   72 (105)
T cd04050           1 LLFVYLDSAKNLPLAKSTK--EPSPYVELTVGK-TTQKSKVKER-TNNPVWEEGFTFLVRNP-ENQELEIEVKDDKT---   72 (105)
T ss_pred             CEEEEEeeecCCCCcccCC--CCCcEEEEEECC-EEEeCccccC-CCCCcccceEEEEeCCC-CCCEEEEEEEECCC---
Confidence            3899999999999887655  599999999987 8999999988 89999999999999864 45689999999872   


Q ss_pred             CCceeeeEEEeCcccccCCCCCCCceeEEEEEeC
Q 021710          100 PKPLVGSVKFPLAHLVDSDSSEPTQYVRKLEVLR  133 (308)
Q Consensus       100 ~d~lLG~~~ipL~~L~~~~~~~~~~~~~~~~L~~  133 (308)
                       +++||++.|+|.+|......   ....||+|..
T Consensus        73 -~~~iG~~~i~l~~l~~~~~~---~~~~w~~L~~  102 (105)
T cd04050          73 -GKSLGSLTLPLSELLKEPDL---TLDQPFPLDN  102 (105)
T ss_pred             -CCccEEEEEEHHHhhccccc---eeeeeEecCC
Confidence             78999999999999875421   4579999963

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular perm

>cd08688 C2_KIAA0528-like C2 domain found in the Human KIAA0528 cDNA clone

Probab=99.75  E-value=1e-17  Score=134.08  Aligned_cols=107  Identities=18%  Similarity=0.324  Sum_probs=88.5

Q ss_pred             EEEEEEEeecCCCCCCCCCCCCCcEEEEEEcCCceEEEEeecCCCCCCcc-ccEEEEeeeCC-CCCceEEEEEEeccCCC
Q 021710           21 LEITIICAKHLKNVNWRNGGDLKPYVVFYVDPAYRLATQSDDSGSTRPVW-NERFTLPITHS-VRESVLTLEIFHSKLSE   98 (308)
Q Consensus        21 L~VtIisAk~L~~~~~~~~~~~dPYv~v~l~~~~k~kT~v~k~gt~nP~W-nE~f~f~l~~~-~~~~~L~l~V~d~~~~~   98 (308)
                      |+|+|++|++|+..+...+ .+||||++.+.. .+.||+++++ +.||+| ||+|.|.+... +.+..|.|+|||++ ..
T Consensus         1 l~V~v~~a~~L~~~d~~~~-~~Dpyv~v~~~~-~~~kT~v~~~-~~nP~W~ne~f~f~i~~~~l~~~~l~i~V~d~d-~~   76 (110)
T cd08688           1 LKVRVVAARDLPVMDRSSD-LTDAFVEVKFGS-TTYKTDVVKK-SLNPVWNSEWFRFEVDDEELQDEPLQIRVMDHD-TY   76 (110)
T ss_pred             CEEEEEEEECCCccccCCC-CCCceEEEEECC-eeEecceecC-CCCCcccCcEEEEEcChHHcCCCeEEEEEEeCC-CC
Confidence            6899999999988774333 599999999987 8999999998 899999 99999998763 34578999999998 35


Q ss_pred             CCCceeeeEEEeCcccccCCCCCCCceeEEEEEeC
Q 021710           99 TPKPLVGSVKFPLAHLVDSDSSEPTQYVRKLEVLR  133 (308)
Q Consensus        99 ~~d~lLG~~~ipL~~L~~~~~~~~~~~~~~~~L~~  133 (308)
                      .++++||++.++|.++.......  ....||+|.+
T Consensus        77 ~~~~~iG~~~~~l~~l~~~~~~~--~~~~w~~l~~  109 (110)
T cd08688          77 SANDAIGKVYIDLNPLLLKDSVS--QISGWFPIYD  109 (110)
T ss_pred             CCCCceEEEEEeHHHhcccCCcc--ccCCeEEccc
Confidence            68899999999999998743221  3468999964

The members of this CD are named after the Human KIAA0528 cDNA clone. All members here contain a single C2 repeat. No other information on this protein is currently known. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/a

>cd08685 C2_RGS-like C2 domain of the Regulator Of G-Protein Signaling (RGS) family

Probab=99.75  E-value=7.9e-18  Score=136.99  Aligned_cols=106  Identities=18%  Similarity=0.351  Sum_probs=85.4

Q ss_pred             cccEEEEEEEEeecCCCCCCCCCCCCCcEEEEEEcC----CceEEEEeecCCCCCCccccEEEEeeeCCCCCceEEEEEE
Q 021710           17 ITHDLEITIICAKHLKNVNWRNGGDLKPYVVFYVDP----AYRLATQSDDSGSTRPVWNERFTLPITHSVRESVLTLEIF   92 (308)
Q Consensus        17 ~~~~L~VtIisAk~L~~~~~~~~~~~dPYv~v~l~~----~~k~kT~v~k~gt~nP~WnE~f~f~l~~~~~~~~L~l~V~   92 (308)
                      ..+.|+|+|++|+||...+ .+  .+||||++++.+    ..+.||+++++ +.||+|||+|.|.+........|.|+||
T Consensus        10 ~~~~L~V~Vi~ar~L~~~~-~g--~~dpYVkv~l~p~~~~~~~~kT~v~~~-t~~P~~nE~F~f~v~~~~~~~~l~v~V~   85 (119)
T cd08685          10 QNRKLTLHVLEAKGLRSTN-SG--TCNSYVKISLSPDKEVRFRQKTSTVPD-SANPLFHETFSFDVNERDYQKRLLVTVW   85 (119)
T ss_pred             cCCEEEEEEEEEECCCCCC-CC--CCCeeEEEEEEeCCCCcceEeCccccC-CCCCccccEEEEEcChHHhCCEEEEEEE
Confidence            3578999999999998887 44  499999999975    24779999988 8999999999999875322357889999


Q ss_pred             eccCCCCCCceeeeEEEeCcccccCCCCCCCceeEEEEE
Q 021710           93 HSKLSETPKPLVGSVKFPLAHLVDSDSSEPTQYVRKLEV  131 (308)
Q Consensus        93 d~~~~~~~d~lLG~~~ipL~~L~~~~~~~~~~~~~~~~L  131 (308)
                      |++....++++||.+.|+|.++..+.     ....||.|
T Consensus        86 ~~~~~~~~~~~lG~~~i~l~~~~~~~-----~~~~Wy~l  119 (119)
T cd08685          86 NKLSKSRDSGLLGCMSFGVKSIVNQK-----EISGWYYL  119 (119)
T ss_pred             CCCCCcCCCEEEEEEEecHHHhccCc-----cccceEeC
Confidence            98842235789999999999997543     23589976

This CD contains members of the regulator of G-protein signaling (RGS) family. RGS is a GTPase activating protein which inhibits G-protein mediated signal transduction. The protein is largely cytosolic, but G-protein activation leads to translocation of this protein to the plasma membrane. A nuclear form of this protein has also been described, but its sequence has not been identified. There are multiple alternatively spliced transcript variants in this family with some members having additional domains (ex. PDZ and RGS) downstream of the C2 domain. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind pho

>cd08387 C2A_Synaptotagmin-8 C2A domain first repeat present in Synaptotagmin 8

Probab=99.75  E-value=2.2e-17  Score=134.70  Aligned_cols=107  Identities=16%  Similarity=0.279  Sum_probs=90.1

Q ss_pred             cccEEEEEEEEeecCCCCCCCCCCCCCcEEEEEEcC--CceEEEEeecCCCCCCccccEEEEeeeCC-CCCceEEEEEEe
Q 021710           17 ITHDLEITIICAKHLKNVNWRNGGDLKPYVVFYVDP--AYRLATQSDDSGSTRPVWNERFTLPITHS-VRESVLTLEIFH   93 (308)
Q Consensus        17 ~~~~L~VtIisAk~L~~~~~~~~~~~dPYv~v~l~~--~~k~kT~v~k~gt~nP~WnE~f~f~l~~~-~~~~~L~l~V~d   93 (308)
                      ..+.|.|+|++|++|...+..+  .+||||++.+.+  ..+.+|+++++ +.||+|||+|.|.+... +....|.|+|||
T Consensus        14 ~~~~L~V~v~~a~~L~~~d~~g--~~dpyv~v~l~~~~~~~~kT~v~~~-t~~P~wne~f~f~v~~~~l~~~~l~i~V~d   90 (124)
T cd08387          14 DMGILNVKLIQARNLQPRDFSG--TADPYCKVRLLPDRSNTKQSKIHKK-TLNPEFDESFVFEVPPQELPKRTLEVLLYD   90 (124)
T ss_pred             CCCEEEEEEEEeeCCCCCCCCC--CCCCeEEEEEecCCCCcEeCceEcC-CCCCCcccEEEEeCCHHHhCCCEEEEEEEE
Confidence            3579999999999999888765  499999999943  46789999998 99999999999998753 345789999999


Q ss_pred             ccCCCCCCceeeeEEEeCcccccCCCCCCCceeEEEEEe
Q 021710           94 SKLSETPKPLVGSVKFPLAHLVDSDSSEPTQYVRKLEVL  132 (308)
Q Consensus        94 ~~~~~~~d~lLG~~~ipL~~L~~~~~~~~~~~~~~~~L~  132 (308)
                      ++ ...++++||++.|+|+++....     ....||.|.
T Consensus        91 ~~-~~~~~~~iG~~~i~l~~~~~~~-----~~~~W~~l~  123 (124)
T cd08387          91 FD-QFSRDECIGVVELPLAEVDLSE-----KLDLWRKIQ  123 (124)
T ss_pred             CC-CCCCCceeEEEEEecccccCCC-----CcceEEECc
Confidence            98 4568999999999999998654     236899985

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involv

>cd04011 C2B_Ferlin C2 domain second repeat in Ferlin

Probab=99.75  E-value=2.9e-17  Score=131.59  Aligned_cols=106  Identities=19%  Similarity=0.342  Sum_probs=88.3

Q ss_pred             ccEEEEEEEEeecCCCCCCCCCCCCCcEEEEEEcCCceEEEEeecCCCCCCccccEEEEeeeCC---CCCceEEEEEEec
Q 021710           18 THDLEITIICAKHLKNVNWRNGGDLKPYVVFYVDPAYRLATQSDDSGSTRPVWNERFTLPITHS---VRESVLTLEIFHS   94 (308)
Q Consensus        18 ~~~L~VtIisAk~L~~~~~~~~~~~dPYv~v~l~~~~k~kT~v~k~gt~nP~WnE~f~f~l~~~---~~~~~L~l~V~d~   94 (308)
                      .+.|+|+|++|++|.    .+  .+||||++++++ .+.+|+++++ +.||+|||+|.|.+...   +.+..|.|+|||.
T Consensus         3 ~~~l~V~v~~a~~L~----~~--~~dpyv~v~~~~-~~~kT~~~~~-t~nP~wne~f~f~~~~~~~~l~~~~l~i~V~d~   74 (111)
T cd04011           3 DFQVRVRVIEARQLV----GG--NIDPVVKVEVGG-QKKYTSVKKG-TNCPFYNEYFFFNFHESPDELFDKIIKISVYDS   74 (111)
T ss_pred             cEEEEEEEEEcccCC----CC--CCCCEEEEEECC-EeeeeeEEec-cCCCccccEEEEecCCCHHHHhcCeEEEEEEcC
Confidence            478999999999998    23  499999999996 7889999988 89999999999997542   2356899999998


Q ss_pred             cCCCCCCceeeeEEEeCcccccCCCCCCCceeEEEEEeCC
Q 021710           95 KLSETPKPLVGSVKFPLAHLVDSDSSEPTQYVRKLEVLRP  134 (308)
Q Consensus        95 ~~~~~~d~lLG~~~ipL~~L~~~~~~~~~~~~~~~~L~~~  134 (308)
                      +. ..++++||++.|+|+++.......  ....|++|.++
T Consensus        75 ~~-~~~~~~iG~~~i~l~~v~~~~~~~--~~~~w~~L~~~  111 (111)
T cd04011          75 RS-LRSDTLIGSFKLDVGTVYDQPDHA--FLRKWLLLTDP  111 (111)
T ss_pred             cc-cccCCccEEEEECCccccCCCCCc--ceEEEEEeeCc
Confidence            83 567899999999999998764443  45789999764

Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangeme

>cd04027 C2B_Munc13 C2 domain second repeat in Munc13 (mammalian uncoordinated) proteins

Probab=99.74  E-value=2.9e-17  Score=134.84  Aligned_cols=114  Identities=19%  Similarity=0.373  Sum_probs=93.8

Q ss_pred             EEEEEEEEeecCCCCCCCCCCCCCcEEEEEEcCCceEEEEeecCCCCCCccccEEEEeeeCCCCCceEEEEEEeccCC--
Q 021710           20 DLEITIICAKHLKNVNWRNGGDLKPYVVFYVDPAYRLATQSDDSGSTRPVWNERFTLPITHSVRESVLTLEIFHSKLS--   97 (308)
Q Consensus        20 ~L~VtIisAk~L~~~~~~~~~~~dPYv~v~l~~~~k~kT~v~k~gt~nP~WnE~f~f~l~~~~~~~~L~l~V~d~~~~--   97 (308)
                      .|+|+|++|++|...+..+.  +||||++.+.. .+.+|+++++ +.||+|||+|.|.+...  ...|.|+|||++..  
T Consensus         2 ~L~V~vi~a~~L~~~d~~g~--~DPyv~v~~~~-~~~kT~~v~~-t~~P~Wne~f~f~~~~~--~~~l~i~v~d~d~~~~   75 (127)
T cd04027           2 KISITVVCAQGLIAKDKTGT--SDPYVTVQVGK-TKKRTKTIPQ-NLNPVWNEKFHFECHNS--SDRIKVRVWDEDDDIK   75 (127)
T ss_pred             eEEEEEEECcCCcCCCCCCC--cCcEEEEEECC-EeeecceecC-CCCCccceEEEEEecCC--CCEEEEEEEECCCCcc
Confidence            68999999999999887764  99999999975 6889999988 89999999999998653  46799999998731  


Q ss_pred             --------CCCCceeeeEEEeCcccccCCCCCCCceeEEEEEeCCCC--CCccEEEEEE
Q 021710           98 --------ETPKPLVGSVKFPLAHLVDSDSSEPTQYVRKLEVLRPSG--RPQGKIRVKL  146 (308)
Q Consensus        98 --------~~~d~lLG~~~ipL~~L~~~~~~~~~~~~~~~~L~~~sg--~~~G~L~v~v  146 (308)
                              ...+++||.+.++|.++..       ....|+.|...++  ..+|+|.+++
T Consensus        76 ~~~~~~~~~~~~~~iG~~~i~l~~~~~-------~~~~w~~L~~~~~~~~~~G~i~~~~  127 (127)
T cd04027          76 SRLKQKFTRESDDFLGQTIIEVRTLSG-------EMDVWYNLEKRTDKSAVSGAIRLHI  127 (127)
T ss_pred             cccceeccccCCCcceEEEEEhHHccC-------CCCeEEECccCCCCCcEeEEEEEEC
Confidence                    1368999999999998743       2248999986544  3689999874

C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrev

>cd08680 C2_Kibra C2 domain found in Human protein Kibra

Probab=99.74  E-value=1.5e-17  Score=136.38  Aligned_cols=106  Identities=19%  Similarity=0.355  Sum_probs=88.1

Q ss_pred             ccEEEEEEEEeecCCCCCCCCCCCCCcEEEEEEcCC-----ceEEEEeecCCCCCCccccEEEEeeeCC-CCCceEEEEE
Q 021710           18 THDLEITIICAKHLKNVNWRNGGDLKPYVVFYVDPA-----YRLATQSDDSGSTRPVWNERFTLPITHS-VRESVLTLEI   91 (308)
Q Consensus        18 ~~~L~VtIisAk~L~~~~~~~~~~~dPYv~v~l~~~-----~k~kT~v~k~gt~nP~WnE~f~f~l~~~-~~~~~L~l~V   91 (308)
                      .+.|+|+|++|+||...+..+  .+||||++++.+.     .+.+|++.++ +.||+|||+|.|++... +.+..|.|.|
T Consensus        13 ~~~L~V~V~~arnL~~~~~~~--~~dpyVKv~Llp~~~~~~~~~kT~v~~~-t~nPvfnE~F~f~v~~~~L~~~~L~~~V   89 (124)
T cd08680          13 DSSLVISVEQLRNLSALSIPE--NSKVYVRVALLPCSSSTSCLFRTKALED-QDKPVFNEVFRVPISSTKLYQKTLQVDV   89 (124)
T ss_pred             CCEEEEEEeEecCCcccccCC--CCCeEEEEEEccCCCCCCceEEcCccCC-CCCCccccEEEEECCHHHhhcCEEEEEE
Confidence            478999999999999876544  5999999999652     3789999998 99999999999998753 5678999999


Q ss_pred             EeccCCCCCCceeeeEEEeCcccccCCCCCCCceeEEEEE
Q 021710           92 FHSKLSETPKPLVGSVKFPLAHLVDSDSSEPTQYVRKLEV  131 (308)
Q Consensus        92 ~d~~~~~~~d~lLG~~~ipL~~L~~~~~~~~~~~~~~~~L  131 (308)
                      ||.+ ...++++||.+.|+|.++.....    ....||.|
T Consensus        90 ~~~~-~~~~~~~lG~~~i~L~~~~~~~~----~~~~Wy~l  124 (124)
T cd08680          90 CSVG-PDQQEECLGGAQISLADFESSEE----MSTKWYNL  124 (124)
T ss_pred             EeCC-CCCceeEEEEEEEEhhhccCCCc----cccccccC
Confidence            9998 46789999999999999954332    23578865

Kibra is thought to be a regulator of the Salvador (Sav)/Warts (Wts)/Hippo (Hpo) (SWH) signaling network, which limits tissue growth by inhibiting cell proliferation and promoting apoptosis. The core of the pathway consists of a MST and LATS family kinase cascade that ultimately phosphorylates and inactivates the YAP/Yorkie (Yki) transcription coactivator. The FERM domain proteins Merlin (Mer) and Expanded (Ex) are part of the upstream regulation controlling pathway mechanism. Kibra colocalizes and associates with Mer and Ex and is thought to transduce an extracellular signal via the SWH network. The apical scaffold machinery that contains Hpo, Wts, and Ex recruits Yki to the apical membrane facilitating its inhibitory phosphorlyation by Wts. Since Kibra associates with Ex and is apically located it is hypothesized that KIBRA is part of the scaffold, helps in the Hpo/Wts complex, and helps recruit Yki for inactivation that prom

>cd08394 C2A_Munc13 C2 domain first repeat in Munc13 (mammalian uncoordinated) proteins

Probab=99.74  E-value=3.5e-17  Score=134.01  Aligned_cols=100  Identities=21%  Similarity=0.279  Sum_probs=83.7

Q ss_pred             cEEEEEEEEeecCCCCCCCCCCCCCcEEEEEEcCCceEEEEeecCCCCCCccccEEEEeeeCCCCCceEEEEEEeccCCC
Q 021710           19 HDLEITIICAKHLKNVNWRNGGDLKPYVVFYVDPAYRLATQSDDSGSTRPVWNERFTLPITHSVRESVLTLEIFHSKLSE   98 (308)
Q Consensus        19 ~~L~VtIisAk~L~~~~~~~~~~~dPYv~v~l~~~~k~kT~v~k~gt~nP~WnE~f~f~l~~~~~~~~L~l~V~d~~~~~   98 (308)
                      +.|.|+|++|++|...+     ..||||+|.++. .+.+|+++++  .||+|||+|.|.+.+  .+..|.|+|||++  .
T Consensus         2 ~~L~V~Vv~Ar~L~~~~-----~~dPYV~Ik~g~-~k~kT~v~~~--~nP~WnE~F~F~~~~--~~~~L~v~V~dkd--~   69 (127)
T cd08394           2 SLLCVLVKKAKLDGAPD-----KFNTYVTLKVQN-VKSTTIAVRG--SQPCWEQDFMFEINR--LDLGLVIELWNKG--L   69 (127)
T ss_pred             ceEEEEEEEeeCCCCCC-----CCCCeEEEEECC-EEeEeeECCC--CCCceeeEEEEEEcC--CCCEEEEEEEeCC--C
Confidence            57999999999997654     268999999986 7889999976  499999999999976  3455999999988  3


Q ss_pred             CCCceeeeEEEeCcccccCCCCCCCceeEEEEEeC
Q 021710           99 TPKPLVGSVKFPLAHLVDSDSSEPTQYVRKLEVLR  133 (308)
Q Consensus        99 ~~d~lLG~~~ipL~~L~~~~~~~~~~~~~~~~L~~  133 (308)
                      ..|+|||++.|+|.++......   ....||+|..
T Consensus        70 ~~DD~lG~v~i~L~~v~~~~~~---~~~~Wy~L~~  101 (127)
T cd08394          70 IWDTLVGTVWIPLSTIRQSNEE---GPGEWLTLDS  101 (127)
T ss_pred             cCCCceEEEEEEhHHcccCCCC---CCCccEecCh
Confidence            4899999999999999876433   2358999973

C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrevi

>cd08393 C2A_SLP-1_2 C2 domain first repeat present in Synaptotagmin-like proteins 1 and 2

Probab=99.74  E-value=2.2e-17  Score=135.36  Aligned_cols=106  Identities=21%  Similarity=0.329  Sum_probs=87.7

Q ss_pred             ccEEEEEEEEeecCCCCCCCCCCCCCcEEEEEEcC----CceEEEEeecCCCCCCccccEEEEeeeCC-CCCceEEEEEE
Q 021710           18 THDLEITIICAKHLKNVNWRNGGDLKPYVVFYVDP----AYRLATQSDDSGSTRPVWNERFTLPITHS-VRESVLTLEIF   92 (308)
Q Consensus        18 ~~~L~VtIisAk~L~~~~~~~~~~~dPYv~v~l~~----~~k~kT~v~k~gt~nP~WnE~f~f~l~~~-~~~~~L~l~V~   92 (308)
                      ...|+|+|++|+||...+...+ .+||||++.+.+    ..+.+|+++++ +.||+|||+|.|.+... +.+..|.|+||
T Consensus        14 ~~~L~V~vi~a~~L~~~d~~~g-~~dpyVkv~l~p~~~~~~~~kT~v~~~-t~nP~~nE~f~f~v~~~~l~~~~L~~~V~   91 (125)
T cd08393          14 LRELHVHVIQCQDLAAADPKKQ-RSDPYVKTYLLPDKSNRGKRKTSVKKK-TLNPVFNETLRYKVEREELPTRVLNLSVW   91 (125)
T ss_pred             CCEEEEEEEEeCCCCCcCCCCC-CCCcEEEEEEEcCCCccccccCccCcC-CCCCccCceEEEECCHHHhCCCEEEEEEE
Confidence            4789999999999998876422 499999999954    24679999998 99999999999998752 45678999999


Q ss_pred             eccCCCCCCceeeeEEEeCcccccCCCCCCCceeEEEEE
Q 021710           93 HSKLSETPKPLVGSVKFPLAHLVDSDSSEPTQYVRKLEV  131 (308)
Q Consensus        93 d~~~~~~~d~lLG~~~ipL~~L~~~~~~~~~~~~~~~~L  131 (308)
                      |.+ ...++++||++.|+|.++....     ....||.|
T Consensus        92 d~~-~~~~~~~iG~~~i~L~~~~~~~-----~~~~W~~L  124 (125)
T cd08393          92 HRD-SLGRNSFLGEVEVDLGSWDWSN-----TQPTWYPL  124 (125)
T ss_pred             eCC-CCCCCcEeEEEEEecCccccCC-----CCcceEEC
Confidence            998 4678899999999999996543     23589987

All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. Slp1/JFC1 and Slp2/exophilin 4 promote granule docking to the plasma membrane. Additionally, their C2A domains are both Ca2+ independent, unlike Slp3 and Slp4/granuphilin which are Ca2+ dependent. It is thought that SHD (except for the Slp4-SHD) functions as a specific Rab27A/B-binding domain. In addition to Slps, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety

>cd08385 C2A_Synaptotagmin-1-5-6-9-10 C2A domain first repeat present in Synaptotagmins 1, 5, 6, 9, and 10

Probab=99.73  E-value=4e-17  Score=132.99  Aligned_cols=107  Identities=22%  Similarity=0.370  Sum_probs=89.0

Q ss_pred             cccEEEEEEEEeecCCCCCCCCCCCCCcEEEEEEcC--CceEEEEeecCCCCCCccccEEEEeeeCC-CCCceEEEEEEe
Q 021710           17 ITHDLEITIICAKHLKNVNWRNGGDLKPYVVFYVDP--AYRLATQSDDSGSTRPVWNERFTLPITHS-VRESVLTLEIFH   93 (308)
Q Consensus        17 ~~~~L~VtIisAk~L~~~~~~~~~~~dPYv~v~l~~--~~k~kT~v~k~gt~nP~WnE~f~f~l~~~-~~~~~L~l~V~d   93 (308)
                      ..+.|+|+|++|++|...+..+.  +||||++.+.+  ..+.+|+++++ +.||+|||+|.|.+... +....|.|+|||
T Consensus        14 ~~~~L~V~v~~a~~L~~~d~~~~--~dpyv~v~l~~~~~~~~kT~v~~~-t~nP~wne~f~f~i~~~~l~~~~l~~~V~d   90 (124)
T cd08385          14 QSNQLTVGIIQAADLPAMDMGGT--SDPYVKVYLLPDKKKKFETKVHRK-TLNPVFNETFTFKVPYSELGNKTLVFSVYD   90 (124)
T ss_pred             CCCEEEEEEEEeeCCCCccCCCC--CCCEEEEEEEcCCCCceecccCcC-CCCCceeeeEEEeCCHHHhCCCEEEEEEEe
Confidence            34789999999999998887664  99999999864  35789999998 89999999999998642 345689999999


Q ss_pred             ccCCCCCCceeeeEEEeCcccccCCCCCCCceeEEEEEe
Q 021710           94 SKLSETPKPLVGSVKFPLAHLVDSDSSEPTQYVRKLEVL  132 (308)
Q Consensus        94 ~~~~~~~d~lLG~~~ipL~~L~~~~~~~~~~~~~~~~L~  132 (308)
                      ++ ...++++||++.|+|+++..+.     ....|+.|.
T Consensus        91 ~d-~~~~~~~lG~~~i~l~~~~~~~-----~~~~W~~l~  123 (124)
T cd08385          91 FD-RFSKHDLIGEVRVPLLTVDLGH-----VTEEWRDLE  123 (124)
T ss_pred             CC-CCCCCceeEEEEEecCcccCCC-----CcceEEEcc
Confidence            98 3568899999999999986643     335899884

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 1, a member of class 1 synaptotagmins, is located in the brain and endocranium and localized to the synaptic vesicles and secretory granules. It functions as a Ca2+ sensor for fast exocytosis as do synaptotagmins 5, 6, and 10. It is distinguished from the other synaptotagmins by having an N-glycosylated N-terminus. Synaptotagmins 5, 6, and 10, members of class 3 synaptotagmins, are located primarily in the brain and localized to the active zone and plasma membrane. They is distinguished from the other synaptotagmins by having disulfide bonds at its N-terminus. Synaptotagmin 6 also regulates the acrosome reaction, a unique Ca2+-regulated exocytosis, in sperm. Synaptotagmin 9, a class 5 synaptotagmins, is located in the brain and

>cd04041 C2A_fungal C2 domain first repeat; fungal group

Probab=99.73  E-value=2.7e-17  Score=131.94  Aligned_cols=102  Identities=21%  Similarity=0.269  Sum_probs=84.8

Q ss_pred             cEEEEEEEEeecCCCCCCC-CCCCCCcEEEEEEcC--CceEEEEeecCCCCCCccccEEEEeeeCC--CCCceEEEEEEe
Q 021710           19 HDLEITIICAKHLKNVNWR-NGGDLKPYVVFYVDP--AYRLATQSDDSGSTRPVWNERFTLPITHS--VRESVLTLEIFH   93 (308)
Q Consensus        19 ~~L~VtIisAk~L~~~~~~-~~~~~dPYv~v~l~~--~~k~kT~v~k~gt~nP~WnE~f~f~l~~~--~~~~~L~l~V~d   93 (308)
                      ++|+|+|++|++|...+.. +.  +||||+|.+..  ..+.+|+++++ +.||+|||+|.|.+...  .....|.|+|||
T Consensus         1 G~L~V~v~~a~~L~~~d~~~~~--~Dpyv~v~~~~~~~~~~kT~v~~~-t~nP~Wne~f~f~~~~~~~~~~~~l~~~V~d   77 (111)
T cd04041           1 GVLVVTIHRATDLPKADFGTGS--SDPYVTASFAKFGKPLYSTRIIRK-DLNPVWEETWFVLVTPDEVKAGERLSCRLWD   77 (111)
T ss_pred             CEEEEEEEEeeCCCcccCCCCC--CCccEEEEEccCCCccEeeeeECC-CCCCccceeEEEEeCchhccCCCEEEEEEEe
Confidence            5799999999999988876 54  99999999854  35789999998 89999999999987642  134689999999


Q ss_pred             ccCCCCCCceeeeEEEeCcccccCCCCCCCceeEEEEEe
Q 021710           94 SKLSETPKPLVGSVKFPLAHLVDSDSSEPTQYVRKLEVL  132 (308)
Q Consensus        94 ~~~~~~~d~lLG~~~ipL~~L~~~~~~~~~~~~~~~~L~  132 (308)
                      ++ ....|++||++.|+|.+|...        ..|++++
T Consensus        78 ~d-~~~~dd~lG~~~i~l~~l~~~--------~~~~~~~  107 (111)
T cd04041          78 SD-RFTADDRLGRVEIDLKELIED--------RNWMGRR  107 (111)
T ss_pred             CC-CCCCCCcceEEEEEHHHHhcC--------CCCCccc
Confidence            98 356889999999999999843        2677764

C2 domains were first identified in Protein Kinase C (PKC). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligan

>cd04049 C2_putative_Elicitor-responsive_gene C2 domain present in the putative elicitor-responsive gene

Probab=99.73  E-value=5.5e-17  Score=132.28  Aligned_cols=106  Identities=20%  Similarity=0.388  Sum_probs=88.6

Q ss_pred             cEEEEEEEEeecCCCCCCCCCCCCCcEEEEEEcCCceEEEEeecCCCCCCccccEEEEeeeCCC--CCceEEEEEEeccC
Q 021710           19 HDLEITIICAKHLKNVNWRNGGDLKPYVVFYVDPAYRLATQSDDSGSTRPVWNERFTLPITHSV--RESVLTLEIFHSKL   96 (308)
Q Consensus        19 ~~L~VtIisAk~L~~~~~~~~~~~dPYv~v~l~~~~k~kT~v~k~gt~nP~WnE~f~f~l~~~~--~~~~L~l~V~d~~~   96 (308)
                      +.|+|+|++|++|++.++.+.  +||||++++.. .+.+|+++++++.||+|||+|.|.+....  ....|.|+|||.+.
T Consensus         1 g~L~V~V~~A~~L~~~~~~~~--~dpyv~v~~~~-~~~~T~~~~~~t~nP~Wne~f~f~v~~~~~~~~~~l~v~V~d~~~   77 (124)
T cd04049           1 GTLEVLLISAKGLQDTDFLGK--IDPYVIIQCRT-QERKSKVAKGDGRNPEWNEKFKFTVEYPGWGGDTKLILRIMDKDN   77 (124)
T ss_pred             CeEEEEEEecCCCCCCCCCCC--cCceEEEEECC-EeeeeeEcCCCCCCCcccceEEEEecCcccCCCCEEEEEEEECcc
Confidence            579999999999999887764  99999999976 67889988755899999999999998741  25689999999983


Q ss_pred             CCCCCceeeeEEEeCcccccCCCCCCCceeEEEEEeC
Q 021710           97 SETPKPLVGSVKFPLAHLVDSDSSEPTQYVRKLEVLR  133 (308)
Q Consensus        97 ~~~~d~lLG~~~ipL~~L~~~~~~~~~~~~~~~~L~~  133 (308)
                       ...+++||++.|+|.+++.....     ..|+.|+.
T Consensus        78 -~~~d~~iG~~~i~l~~l~~~~~~-----~~~~~l~p  108 (124)
T cd04049          78 -FSDDDFIGEATIHLKGLFEEGVE-----PGTAELVP  108 (124)
T ss_pred             -CCCCCeEEEEEEEhHHhhhCCCC-----cCceEeec
Confidence             56889999999999999875433     47888753

In plants elicitor-responsive proteins are triggered in response to specific elicitor molecules such as glycolproteins, peptides, carbohydrates and lipids. A host of defensive responses are also triggered resulting in localized cell death. Antimicrobial secondary metabolites, such as phytoalexins, or defense-related proteins, including pathogenesis-related (PR) proteins are also produced. There is a single C2 domain present here. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contai

>cd04030 C2C_KIAA1228 C2 domain third repeat present in uncharacterized human KIAA1228-like proteins

Probab=99.72  E-value=5.8e-17  Score=132.41  Aligned_cols=106  Identities=24%  Similarity=0.394  Sum_probs=88.2

Q ss_pred             ccEEEEEEEEeecCCCCCCCCCCCCCcEEEEEEcC----CceEEEEeecCCCCCCccccEEEEeeeCC-CCCceEEEEEE
Q 021710           18 THDLEITIICAKHLKNVNWRNGGDLKPYVVFYVDP----AYRLATQSDDSGSTRPVWNERFTLPITHS-VRESVLTLEIF   92 (308)
Q Consensus        18 ~~~L~VtIisAk~L~~~~~~~~~~~dPYv~v~l~~----~~k~kT~v~k~gt~nP~WnE~f~f~l~~~-~~~~~L~l~V~   92 (308)
                      .+.|+|+|++|+||...+..+  .+||||++.+.+    ..+.+|+++++ +.||+|||+|.|.+... +....|.|.||
T Consensus        15 ~~~L~V~vi~a~~L~~~~~~~--~~dpyv~v~l~~~~~~~~~~kT~v~~~-~~nP~wne~f~f~i~~~~l~~~~l~i~v~   91 (127)
T cd04030          15 RQKLIVTVHKCRNLPPCDSSD--IPDPYVRLYLLPDKSKSTRRKTSVKKD-NLNPVFDETFEFPVSLEELKRRTLDVAVK   91 (127)
T ss_pred             CCEEEEEEEEEECCCCccCCC--CCCceEEEEEEcCCCCCceEecccccC-CCCCEECeEEEEecCHHHhcCCEEEEEEE
Confidence            478999999999999988765  499999999964    36889999998 89999999999998652 34578999999


Q ss_pred             eccCC-CCCCceeeeEEEeCcccccCCCCCCCceeEEEEE
Q 021710           93 HSKLS-ETPKPLVGSVKFPLAHLVDSDSSEPTQYVRKLEV  131 (308)
Q Consensus        93 d~~~~-~~~d~lLG~~~ipL~~L~~~~~~~~~~~~~~~~L  131 (308)
                      |++.. ..++++||++.|+|.+|....     ....||.|
T Consensus        92 ~~~~~~~~~~~~iG~~~i~l~~l~~~~-----~~~~W~~L  126 (127)
T cd04030          92 NSKSFLSREKKLLGQVLIDLSDLDLSK-----GFTQWYDL  126 (127)
T ss_pred             ECCcccCCCCceEEEEEEecccccccC-----CccceEEC
Confidence            98732 157899999999999986543     23589987

KIAA proteins are uncharacterized human proteins. They were compiled by the Kazusa mammalian cDNA project which identified more than 2000 human genes. They are identified by 4 digit codes that precede the KIAA designation. Many KIAA genes are still functionally uncharacterized including KIAA1228. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1

>cd04045 C2C_Tricalbin-like C2 domain third repeat present in Tricalbin-like proteins

Probab=99.72  E-value=7.9e-17  Score=131.21  Aligned_cols=105  Identities=24%  Similarity=0.345  Sum_probs=89.9

Q ss_pred             cEEEEEEEEeecCCCCCCCCCCCCCcEEEEEEcCCceEEEEeecCCCCCCccccEEEEeeeCCCCCceEEEEEEeccCCC
Q 021710           19 HDLEITIICAKHLKNVNWRNGGDLKPYVVFYVDPAYRLATQSDDSGSTRPVWNERFTLPITHSVRESVLTLEIFHSKLSE   98 (308)
Q Consensus        19 ~~L~VtIisAk~L~~~~~~~~~~~dPYv~v~l~~~~k~kT~v~k~gt~nP~WnE~f~f~l~~~~~~~~L~l~V~d~~~~~   98 (308)
                      +.|+|+|++|++|+..+..+.  +||||+++++...+.+|+++++ +.||+|||+|.|.+...  ...|.|+|||++ ..
T Consensus         1 g~L~V~Vi~a~~L~~~d~~g~--~DPYv~v~~~~~~~~kT~~~~~-t~~P~Wne~f~~~v~~~--~~~L~v~v~d~~-~~   74 (120)
T cd04045           1 GVLRLHIRKANDLKNLEGVGK--IDPYVRVLVNGIVKGRTVTISN-TLNPVWDEVLYVPVTSP--NQKITLEVMDYE-KV   74 (120)
T ss_pred             CeEEEEEEeeECCCCccCCCC--cCCEEEEEECCEEeeceeEECC-CcCCccCceEEEEecCC--CCEEEEEEEECC-CC
Confidence            579999999999999887664  9999999997666889999887 89999999999998763  568999999998 35


Q ss_pred             CCCceeeeEEEeCcccccCCCCCCCceeEEEEEeCCC
Q 021710           99 TPKPLVGSVKFPLAHLVDSDSSEPTQYVRKLEVLRPS  135 (308)
Q Consensus        99 ~~d~lLG~~~ipL~~L~~~~~~~~~~~~~~~~L~~~s  135 (308)
                      ..|++||+++++|.++....      ...||.|.+.+
T Consensus        75 ~~d~~IG~~~~~l~~l~~~~------~~~~~~~~~~~  105 (120)
T cd04045          75 GKDRSLGSVEINVSDLIKKN------EDGKYVEYDDE  105 (120)
T ss_pred             CCCCeeeEEEEeHHHhhCCC------CCceEEecCCC
Confidence            68899999999999998752      25789887654

5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain.

>cd08691 C2_NEDL1-like C2 domain present in NEDL1 (NEDD4-like ubiquitin protein ligase-1)

Probab=99.72  E-value=1.5e-16  Score=132.67  Aligned_cols=118  Identities=18%  Similarity=0.332  Sum_probs=94.2

Q ss_pred             EEEEEEEEeecCCCCCCCCCCCCCcEEEEEEcCC------------ceEEEEeecCCCCCCcc-ccEEEEeeeCCCCCce
Q 021710           20 DLEITIICAKHLKNVNWRNGGDLKPYVVFYVDPA------------YRLATQSDDSGSTRPVW-NERFTLPITHSVRESV   86 (308)
Q Consensus        20 ~L~VtIisAk~L~~~~~~~~~~~dPYv~v~l~~~------------~k~kT~v~k~gt~nP~W-nE~f~f~l~~~~~~~~   86 (308)
                      +..|++++|++|+ .+++++  +||||++.+.+.            .+++|+++++ +.||+| ||+|.|.+..   ...
T Consensus         2 ~~~~~~~~A~~L~-~~~fg~--~DPyvki~~~~~~~~~~~~~~~~~~~~kT~v~~~-tlnP~W~nE~f~f~v~~---~~~   74 (137)
T cd08691           2 SFSLSGLQARNLK-KGMFFN--PDPYVKISIQPGKRHIFPALPHHGQECRTSIVEN-TINPVWHREQFVFVGLP---TDV   74 (137)
T ss_pred             EEEEEEEEeCCCC-CccCCC--CCceEEEEEECCCcccccccccccceeeeeeEcC-CCCCceEceEEEEEcCC---CCE
Confidence            4689999999998 677765  999999999642            3789999998 999999 9999999864   458


Q ss_pred             EEEEEEeccCCCC--CCceeeeEEEeCcccccCCCCCCCceeEEEEEeCCC--CCCccEEEEEE
Q 021710           87 LTLEIFHSKLSET--PKPLVGSVKFPLAHLVDSDSSEPTQYVRKLEVLRPS--GRPQGKIRVKL  146 (308)
Q Consensus        87 L~l~V~d~~~~~~--~d~lLG~~~ipL~~L~~~~~~~~~~~~~~~~L~~~s--g~~~G~L~v~v  146 (308)
                      |.|+|||++....  .+++||++.|+|.+|+......  ....|++|.+.+  ...+|+|.+++
T Consensus        75 L~v~V~D~~~~~~~~~~d~lG~~~i~l~~l~~~~~~~--~~~~~~~l~k~~~~s~v~G~~~l~~  136 (137)
T cd08691          75 LEIEVKDKFAKSRPIIRRFLGKLSIPVQRLLERHAIG--DQELSYTLGRRTPTDHVSGQLTFRF  136 (137)
T ss_pred             EEEEEEecCCCCCccCCceEEEEEEEHHHhcccccCC--ceEEEEECCcCCCCCcEEEEEEEEe
Confidence            9999999763211  2789999999999998765443  457899987643  34689998876

NEDL1 (AKA HECW1(HECT, C2 and WW domain containing E3 ubiquitin protein ligase 1)) is a newly identified HECT-type E3 ubiquitin protein ligase highly expressed in favorable neuroblastomas. In vertebrates it is found primarily in neuronal tissues, including the spinal cord. NEDL1 is thought to normally function in the quality control of cellular proteins by eliminating misfolded proteins. This is thought to be accomplished via a mechanism analogous to that of ER-associated degradation by forming tight complexes and aggregating misfolded proteins that have escaped ubiquitin-mediated degradation. NEDL1, is composed of a C2 domain, two WW domains, and a ubiquitin ligase Hect domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are C

>cd08388 C2A_Synaptotagmin-4-11 C2A domain first repeat present in Synaptotagmins 4 and 11

Probab=99.72  E-value=1.1e-16  Score=131.86  Aligned_cols=110  Identities=21%  Similarity=0.330  Sum_probs=87.5

Q ss_pred             cccEEEEEEEEeecCCCCCCCCCCCCCcEEEEEEcC--CceEEEEeecCCCCCCccccEEEEe-eeC-CCCCceEEEEEE
Q 021710           17 ITHDLEITIICAKHLKNVNWRNGGDLKPYVVFYVDP--AYRLATQSDDSGSTRPVWNERFTLP-ITH-SVRESVLTLEIF   92 (308)
Q Consensus        17 ~~~~L~VtIisAk~L~~~~~~~~~~~dPYv~v~l~~--~~k~kT~v~k~gt~nP~WnE~f~f~-l~~-~~~~~~L~l~V~   92 (308)
                      ....|+|+|++|++|+..+..++ .+||||++.+.+  ..+.||+++++ +.||+|||+|.|. +.. .+.+..|.|+||
T Consensus        14 ~~~~L~V~Vi~a~~L~~~~~~~~-~~DpyV~v~l~~~~~~~~kT~v~~~-t~nP~wnE~F~f~~~~~~~~~~~~L~~~V~   91 (128)
T cd08388          14 EKKALLVNIIECRDLPAMDEQSG-TSDPYVKLQLLPEKEHKVKTRVLRK-TRNPVYDETFTFYGIPYNQLQDLSLHFAVL   91 (128)
T ss_pred             CCCEEEEEEEEeECCCCCCCCCC-CcCCEEEEEEeCCcCceeeccEEcC-CCCCceeeEEEEcccCHHHhCCCEEEEEEE
Confidence            35799999999999998776523 599999999964  35779999998 9999999999994 543 234567999999


Q ss_pred             eccCCCCCCceeeeEEEeCcccccCCCCCCCceeEEEEEe
Q 021710           93 HSKLSETPKPLVGSVKFPLAHLVDSDSSEPTQYVRKLEVL  132 (308)
Q Consensus        93 d~~~~~~~d~lLG~~~ipL~~L~~~~~~~~~~~~~~~~L~  132 (308)
                      |++ ...++++||++.|+|+++....+.   ....|++|.
T Consensus        92 d~d-~~~~d~~lG~~~i~L~~l~~~~~~---~~~~~~~~~  127 (128)
T cd08388          92 SFD-RYSRDDVIGEVVCPLAGADLLNEG---ELLVSREIQ  127 (128)
T ss_pred             EcC-CCCCCceeEEEEEeccccCCCCCc---eEEEEEecc
Confidence            998 467899999999999998654332   346788773

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmins 4 and 11, class 4 synaptotagmins, are located in the brain. Their functions are unknown. They are distinguished from the other synaptotagmins by having and Asp to Ser substitution in their C2A domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence

>cd00275 C2_PLC_like C2 domain present in Phosphoinositide-specific phospholipases C (PLC)

Probab=99.72  E-value=3.1e-16  Score=127.89  Aligned_cols=117  Identities=21%  Similarity=0.388  Sum_probs=95.6

Q ss_pred             cEEEEEEEEeecCCCCC--CCCCCCCCcEEEEEEcC-----CceEEEEeecCCCCCCccccEEEEeeeCCCCCceEEEEE
Q 021710           19 HDLEITIICAKHLKNVN--WRNGGDLKPYVVFYVDP-----AYRLATQSDDSGSTRPVWNERFTLPITHSVRESVLTLEI   91 (308)
Q Consensus        19 ~~L~VtIisAk~L~~~~--~~~~~~~dPYv~v~l~~-----~~k~kT~v~k~gt~nP~WnE~f~f~l~~~~~~~~L~l~V   91 (308)
                      ..|+|+|++|++|+..+  ..+  ..||||++++..     ..+.+|+++++++.||+|||+|.|.+... ....|.|+|
T Consensus         2 ~~l~v~vi~a~~L~~~~~~~~~--~~dpyv~v~l~~~~~~~~~~~kT~~~~~~~~~P~w~e~f~f~~~~~-~~~~l~~~V   78 (128)
T cd00275           2 LTLTIKIISGQQLPKPKGDKGS--IVDPYVEVEIHGLPADDSAKFKTKVVKNNGFNPVWNETFEFDVTVP-ELAFLRFVV   78 (128)
T ss_pred             eEEEEEEEeeecCCCCCCCCCC--ccCCEEEEEEEeCCCCCCCcEeeeeecCCCcCCccCCcEEEEEeCC-CeEEEEEEE
Confidence            57999999999999877  344  499999999942     35789999887345999999999998753 345799999


Q ss_pred             EeccCCCCCCceeeeEEEeCcccccCCCCCCCceeEEEEEeCCCCC--CccEEEEEEEE
Q 021710           92 FHSKLSETPKPLVGSVKFPLAHLVDSDSSEPTQYVRKLEVLRPSGR--PQGKIRVKLVL  148 (308)
Q Consensus        92 ~d~~~~~~~d~lLG~~~ipL~~L~~~~~~~~~~~~~~~~L~~~sg~--~~G~L~v~v~~  148 (308)
                      ||++. . ++++||++.++|++|..+        .+|++|++..++  ..|+|.|++++
T Consensus        79 ~d~~~-~-~~~~iG~~~~~l~~l~~g--------~~~~~l~~~~~~~~~~~~l~v~~~~  127 (128)
T cd00275          79 YDEDS-G-DDDFLGQACLPLDSLRQG--------YRHVPLLDSKGEPLELSTLFVHIDI  127 (128)
T ss_pred             EeCCC-C-CCcEeEEEEEEhHHhcCc--------eEEEEecCCCCCCCcceeEEEEEEE
Confidence            99984 4 889999999999998542        378999887775  47899999886

PLCs are involved in the hydrolysis of phosphatidylinositol-4,5-bisphosphate (PIP2) to d-myo-inositol-1,4,5-trisphosphate (1,4,5-IP3) and sn-1,2-diacylglycerol (DAG). 1,4,5-IP3 and DAG are second messengers in eukaryotic signal transduction cascades. PLC is composed of a N-terminal PH domain followed by a series of EF hands, a catalytic TIM barrel and a C-terminal C2 domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking

>cd04031 C2A_RIM1alpha C2 domain first repeat contained in Rab3-interacting molecule (RIM) proteins

Probab=99.72  E-value=8.2e-17  Score=131.03  Aligned_cols=106  Identities=20%  Similarity=0.340  Sum_probs=86.2

Q ss_pred             cccEEEEEEEEeecCCCCCCCCCCCCCcEEEEEEcC----CceEEEEeecCCCCCCccccEEEEeeeC--CCCCceEEEE
Q 021710           17 ITHDLEITIICAKHLKNVNWRNGGDLKPYVVFYVDP----AYRLATQSDDSGSTRPVWNERFTLPITH--SVRESVLTLE   90 (308)
Q Consensus        17 ~~~~L~VtIisAk~L~~~~~~~~~~~dPYv~v~l~~----~~k~kT~v~k~gt~nP~WnE~f~f~l~~--~~~~~~L~l~   90 (308)
                      ..+.|+|+|++|++|...+..+  .+||||++.+.+    ..+.+|+++++ +.||+|||+|.|.+..  .+....|.|+
T Consensus        14 ~~~~L~V~vi~a~~L~~~~~~~--~~dpyv~v~l~~~~~~~~~~kT~v~~~-t~nP~wne~f~f~~~~~~~l~~~~l~~~   90 (125)
T cd04031          14 VTSQLIVTVLQARDLPPRDDGS--LRNPYVKVYLLPDRSEKSKRRTKTVKK-TLNPEWNQTFEYSNVRRETLKERTLEVT   90 (125)
T ss_pred             CCCEEEEEEEEecCCCCcCCCC--CCCCEEEEEEccCCCccccccccccCC-CCCCccccEEEEcccCHHHhCCCEEEEE
Confidence            3578999999999999888765  499999999965    35789999998 9999999999998643  2346789999


Q ss_pred             EEeccCCCCCCceeeeEEEeCcccccCCCCCCCceeEEEEEe
Q 021710           91 IFHSKLSETPKPLVGSVKFPLAHLVDSDSSEPTQYVRKLEVL  132 (308)
Q Consensus        91 V~d~~~~~~~d~lLG~~~ipL~~L~~~~~~~~~~~~~~~~L~  132 (308)
                      |||++ ....+++||++.++|++...+      ....||+|.
T Consensus        91 V~d~~-~~~~~~~iG~~~i~l~~~~~~------~~~~W~~L~  125 (125)
T cd04031          91 VWDYD-RDGENDFLGEVVIDLADALLD------DEPHWYPLQ  125 (125)
T ss_pred             EEeCC-CCCCCcEeeEEEEeccccccc------CCcceEECc
Confidence            99998 356789999999999994332      124899873

RIMs are believed to organize specialized sites of the plasma membrane called active zones. They also play a role in controlling neurotransmitter release, plasticity processes, as well as memory and learning. RIM contains an N-terminal zinc finger domain, a PDZ domain, and two C-terminal C2 domains (C2A, C2B). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as

>cd08386 C2A_Synaptotagmin-7 C2A domain first repeat present in Synaptotagmin 7

Probab=99.71  E-value=1.6e-16  Score=129.55  Aligned_cols=107  Identities=20%  Similarity=0.322  Sum_probs=88.1

Q ss_pred             cccEEEEEEEEeecCCCCCCCCCCCCCcEEEEEEc--CCceEEEEeecCCCCCCccccEEEEeeeC--CCCCceEEEEEE
Q 021710           17 ITHDLEITIICAKHLKNVNWRNGGDLKPYVVFYVD--PAYRLATQSDDSGSTRPVWNERFTLPITH--SVRESVLTLEIF   92 (308)
Q Consensus        17 ~~~~L~VtIisAk~L~~~~~~~~~~~dPYv~v~l~--~~~k~kT~v~k~gt~nP~WnE~f~f~l~~--~~~~~~L~l~V~   92 (308)
                      ....|+|+|++|++|+..+..+.  +||||++.+.  ...+.+|+++++ +.||+|||+|.|.+..  .+.+..|.|+||
T Consensus        14 ~~~~L~v~v~~a~~L~~~d~~~~--~dpyv~v~~~~~~~~~~kT~v~~~-t~~P~Wne~f~f~~~~~~~l~~~~l~~~v~   90 (125)
T cd08386          14 QESTLTLKILKAVELPAKDFSGT--SDPFVKIYLLPDKKHKLETKVKRK-NLNPHWNETFLFEGFPYEKLQQRVLYLQVL   90 (125)
T ss_pred             CCCEEEEEEEEecCCCCccCCCC--CCceEEEEECCCCCcceeeeeecC-CCCCccceeEEEcccCHHHhCCCEEEEEEE
Confidence            35789999999999998887664  9999999994  346789999998 9999999999998532  134568999999


Q ss_pred             eccCCCCCCceeeeEEEeCcccccCCCCCCCceeEEEEEe
Q 021710           93 HSKLSETPKPLVGSVKFPLAHLVDSDSSEPTQYVRKLEVL  132 (308)
Q Consensus        93 d~~~~~~~d~lLG~~~ipL~~L~~~~~~~~~~~~~~~~L~  132 (308)
                      |++ ...++++||++.|+|+++....     ....|+.|.
T Consensus        91 d~d-~~~~~~~iG~~~i~l~~l~~~~-----~~~~W~~l~  124 (125)
T cd08386          91 DYD-RFSRNDPIGEVSLPLNKVDLTE-----EQTFWKDLK  124 (125)
T ss_pred             eCC-CCcCCcEeeEEEEecccccCCC-----CcceEEecC
Confidence            998 3668899999999999987643     336899884

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 7, a member of class 2 synaptotagmins, is located in presynaptic plasma membranes in neurons, dense-core vesicles in endocrine cells, and lysosomes in fibroblasts. It has been shown to play a role in regulation of Ca2+-dependent lysosomal exocytosis in fibroblasts and may also function as a vesicular Ca2+-sensor. It is distinguished from the other synaptotagmins by having over 12 splice forms. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic ves

>cd08521 C2A_SLP C2 domain first repeat present in Synaptotagmin-like proteins

Probab=99.71  E-value=9.8e-17  Score=130.21  Aligned_cols=106  Identities=25%  Similarity=0.379  Sum_probs=86.8

Q ss_pred             cccEEEEEEEEeecCCCCC-CCCCCCCCcEEEEEEcCC----ceEEEEeecCCCCCCccccEEEEeeeCC-CCCceEEEE
Q 021710           17 ITHDLEITIICAKHLKNVN-WRNGGDLKPYVVFYVDPA----YRLATQSDDSGSTRPVWNERFTLPITHS-VRESVLTLE   90 (308)
Q Consensus        17 ~~~~L~VtIisAk~L~~~~-~~~~~~~dPYv~v~l~~~----~k~kT~v~k~gt~nP~WnE~f~f~l~~~-~~~~~L~l~   90 (308)
                      ..+.|+|+|++|+||+..+ ..+  .+||||++.+.+.    .+.+|+++++ +.||+|||+|.|.+... +....|.|+
T Consensus        12 ~~~~L~V~v~~a~~L~~~~~~~~--~~dpyv~v~l~~~~~~~~~~kT~v~~~-t~~P~wne~f~f~i~~~~l~~~~l~i~   88 (123)
T cd08521          12 KTGSLEVHIKECRNLAYADEKKK--RSNPYVKVYLLPDKSKQSKRKTSVKKN-TTNPVFNETLKYHISKSQLETRTLQLS   88 (123)
T ss_pred             CCCEEEEEEEEecCCCCcCCCCC--CCCcEEEEEEecCCCcCceeeccccCC-CCCCcccceEEEeCCHHHhCCCEEEEE
Confidence            3578999999999999887 444  5999999998542    4689999887 99999999999998753 345689999


Q ss_pred             EEeccCCCCCCceeeeEEEeCcccccCCCCCCCceeEEEEE
Q 021710           91 IFHSKLSETPKPLVGSVKFPLAHLVDSDSSEPTQYVRKLEV  131 (308)
Q Consensus        91 V~d~~~~~~~d~lLG~~~ipL~~L~~~~~~~~~~~~~~~~L  131 (308)
                      |||++ ...++++||++.++|+++....     ....||+|
T Consensus        89 v~d~~-~~~~~~~iG~~~i~l~~l~~~~-----~~~~w~~l  123 (123)
T cd08521          89 VWHHD-RFGRNTFLGEVEIPLDSWDLDS-----QQSEWYPL  123 (123)
T ss_pred             EEeCC-CCcCCceeeEEEEecccccccC-----CCccEEEC
Confidence            99988 3568899999999999996433     23689976

All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. Slp1/JFC1 and Slp2/exophilin 4 promote granule docking to the plasma membrane. Additionally, their C2A domains are both Ca2+ independent, unlike the case in Slp3 and Slp4/granuphilin in which their C2A domains are Ca2+ dependent. It is thought that SHD (except for the Slp4-SHD) functions as a specific Rab27A/B-binding domain. In addition to Slps, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. It has been demonstrated that Slp3 and Slp4/granuphilin promote dense-core vesicle exocytosis. Slp5 mRNA has been shown to be restricted to human placenta and liver suggesting a role in Rab27A-dependent membrane trafficking in specific tissues. C2 domains fold into

>cd04013 C2_SynGAP_like C2 domain present in Ras GTPase activating protein (GAP) family

Probab=99.71  E-value=2.7e-16  Score=132.18  Aligned_cols=121  Identities=21%  Similarity=0.324  Sum_probs=97.4

Q ss_pred             ccEEEEEEEEeecCCCCCCCCCCCCCcEEEEEEcCCceEEEEeecCCCCCCccccEEEEeeeCCCCCceEEEEEEeccCC
Q 021710           18 THDLEITIICAKHLKNVNWRNGGDLKPYVVFYVDPAYRLATQSDDSGSTRPVWNERFTLPITHSVRESVLTLEIFHSKLS   97 (308)
Q Consensus        18 ~~~L~VtIisAk~L~~~~~~~~~~~dPYv~v~l~~~~k~kT~v~k~gt~nP~WnE~f~f~l~~~~~~~~L~l~V~d~~~~   97 (308)
                      ...|.|.|++|++|...       .++||++.|+.....||+++.+ +.||.|+|+|.|.....  ...|+|.||+.+..
T Consensus        10 ~~sL~v~V~EAk~Lp~~-------~~~Y~~i~Ld~~~vaRT~v~~~-~~nP~W~E~F~f~~~~~--~~~l~v~v~k~~~~   79 (146)
T cd04013          10 ENSLKLWIIEAKGLPPK-------KRYYCELCLDKTLYARTTSKLK-TDTLFWGEHFEFSNLPP--VSVITVNLYRESDK   79 (146)
T ss_pred             EEEEEEEEEEccCCCCc-------CCceEEEEECCEEEEEEEEEcC-CCCCcceeeEEecCCCc--ccEEEEEEEEccCc
Confidence            36799999999999753       4799999999877789999998 89999999999986553  46799999875521


Q ss_pred             C---CCCceeeeEEEeCcccccCCCCCCCceeEEEEEeCCCCCC----------ccEEEEEEEEccCCC
Q 021710           98 E---TPKPLVGSVKFPLAHLVDSDSSEPTQYVRKLEVLRPSGRP----------QGKIRVKLVLNGRPL  153 (308)
Q Consensus        98 ~---~~d~lLG~~~ipL~~L~~~~~~~~~~~~~~~~L~~~sg~~----------~G~L~v~v~~~~~~~  153 (308)
                      .   .++.+||++.|++.+|....     ....||+|...++.+          .++|+|+++|.+...
T Consensus        80 ~~~~~~~~~IG~V~Ip~~~l~~~~-----~ve~Wfpl~~~~~~~~~~~~~~~~~~~~lrik~rf~~~~~  143 (146)
T cd04013          80 KKKKDKSQLIGTVNIPVTDVSSRQ-----FVEKWYPVSTPKGNGKSGGKEGKGESPSIRIKARYQSTRV  143 (146)
T ss_pred             cccccCCcEEEEEEEEHHHhcCCC-----cccEEEEeecCCCCCccccccccCCCCEEEEEEEEEEeee
Confidence            2   25789999999999998644     346999999876543          379999999987543

SynGAP, GAP1, RasGAP, and neurofibromin are all members of the Ras-specific GAP (GTPase-activating protein) family. SynGAP regulates the MAP kinase signaling pathway and is critical for cognition and synapse function. Mutations in this gene causes mental retardation in humans. SynGAP contains a PH-like domain, a C2 domain, and a Ras-GAP domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at leas

>cd08390 C2A_Synaptotagmin-15-17 C2A domain first repeat present in Synaptotagmins 15 and 17

Probab=99.69  E-value=4.1e-16  Score=126.67  Aligned_cols=107  Identities=19%  Similarity=0.304  Sum_probs=88.0

Q ss_pred             cccEEEEEEEEeecCCCCC-CCCCCCCCcEEEEEEcC--CceEEEEeecCCCCCCccccEEEEeeeCC-CCCceEEEEEE
Q 021710           17 ITHDLEITIICAKHLKNVN-WRNGGDLKPYVVFYVDP--AYRLATQSDDSGSTRPVWNERFTLPITHS-VRESVLTLEIF   92 (308)
Q Consensus        17 ~~~~L~VtIisAk~L~~~~-~~~~~~~dPYv~v~l~~--~~k~kT~v~k~gt~nP~WnE~f~f~l~~~-~~~~~L~l~V~   92 (308)
                      ..+.|+|+|++|++|+..+ ..+  .+||||++.+.+  ..+.+|+++++ +.||+|||+|.|.+... +....|.|+||
T Consensus        12 ~~~~L~V~v~~a~~L~~~~~~~~--~~dpyV~v~l~~~~~~~~~T~v~~~-~~~P~wne~f~f~i~~~~l~~~~l~i~v~   88 (123)
T cd08390          12 EEEQLTVSLIKARNLPPRTKDVA--HCDPFVKVCLLPDERRSLQSKVKRK-TQNPNFDETFVFQVSFKELQRRTLRLSVY   88 (123)
T ss_pred             CCCEEEEEEEEecCCCCccCCCC--CCCcEEEEEEeeCCCCceEeeeEcC-CCCCccceEEEEEcCHHHhcccEEEEEEE
Confidence            3578999999999999887 454  499999999843  35778999998 99999999999998753 23468999999


Q ss_pred             eccCCCCCCceeeeEEEeCcccccCCCCCCCceeEEEEEe
Q 021710           93 HSKLSETPKPLVGSVKFPLAHLVDSDSSEPTQYVRKLEVL  132 (308)
Q Consensus        93 d~~~~~~~d~lLG~~~ipL~~L~~~~~~~~~~~~~~~~L~  132 (308)
                      |.+. ..++++||++.|+|+++.....     ...|++|.
T Consensus        89 d~~~-~~~~~~iG~~~i~L~~l~~~~~-----~~~w~~L~  122 (123)
T cd08390          89 DVDR-FSRHCIIGHVLFPLKDLDLVKG-----GVVWRDLE  122 (123)
T ss_pred             ECCc-CCCCcEEEEEEEeccceecCCC-----ceEEEeCC
Confidence            9883 5678999999999999987542     35899884

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. It is thought to be involved in the trafficking and exocytosis of secretory vesicles in non-neuronal tissues and is Ca2+ independent. Human synaptotagmin 15 has 2 alternatively spliced forms that encode proteins with different C-termini. The larger, SYT15a, contains a N-terminal TM region, a putative fatty-acylation site, and 2 tandem C terminal C2 domains. The smaller, SYT15b, lacks the C-terminal portion of the second C2 domain. Unlike most other synaptotagmins it is nearly absent in the brain and rather is found in the heart, lungs, skeletal muscle, and testis. Synaptotagmin 17 is located in the brain, kidney, and prostate and is thought to be a peripheral membrane protein. Previously all synaptotagmins were thought to be calcium sensors in the regulat

>cd04052 C2B_Tricalbin-like C2 domain second repeat present in Tricalbin-like proteins

Probab=99.69  E-value=3.1e-16  Score=125.76  Aligned_cols=99  Identities=24%  Similarity=0.421  Sum_probs=83.4

Q ss_pred             CCCcEEEEEEcCCceEEEEeecCCCCCCccccEEEEeeeCCCCCceEEEEEEeccCCCCCCceeeeEEEeCcccccCCCC
Q 021710           41 DLKPYVVFYVDPAYRLATQSDDSGSTRPVWNERFTLPITHSVRESVLTLEIFHSKLSETPKPLVGSVKFPLAHLVDSDSS  120 (308)
Q Consensus        41 ~~dPYv~v~l~~~~k~kT~v~k~gt~nP~WnE~f~f~l~~~~~~~~L~l~V~d~~~~~~~d~lLG~~~ipL~~L~~~~~~  120 (308)
                      .+||||++.++.....+|+++++ +.||+|||.|.|.+.+. ....|.|+|||++. . ++++||++.|+|.+++.... 
T Consensus        12 ~~dPYv~v~v~~~~~~kT~v~~~-t~nP~Wne~f~f~v~~~-~~~~l~i~v~d~~~-~-~d~~iG~~~v~L~~l~~~~~-   86 (111)
T cd04052          12 LLSPYAELYLNGKLVYTTRVKKK-TNNPSWNASTEFLVTDR-RKSRVTVVVKDDRD-R-HDPVLGSVSISLNDLIDATS-   86 (111)
T ss_pred             CCCceEEEEECCEEEEEEeeecc-CCCCccCCceEEEecCc-CCCEEEEEEEECCC-C-CCCeEEEEEecHHHHHhhhh-
Confidence            59999999998756789999888 89999999999998764 46789999999984 4 89999999999999976422 


Q ss_pred             CCCceeEEEEEeCCCCCCccEEEEEEEEcc
Q 021710          121 EPTQYVRKLEVLRPSGRPQGKIRVKLVLNG  150 (308)
Q Consensus       121 ~~~~~~~~~~L~~~sg~~~G~L~v~v~~~~  150 (308)
                         ....||.|.+   ..+|+|+|++.|.+
T Consensus        87 ---~~~~w~~L~~---~~~G~i~~~~~~~p  110 (111)
T cd04052          87 ---VGQQWFPLSG---NGQGRIRISALWKP  110 (111)
T ss_pred             ---ccceeEECCC---CCCCEEEEEEEEec
Confidence               2358999963   57899999999975

5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain.

>cd04018 C2C_Ferlin C2 domain third repeat in Ferlin

Probab=99.68  E-value=3.8e-16  Score=132.21  Aligned_cols=111  Identities=17%  Similarity=0.215  Sum_probs=86.7

Q ss_pred             EEEEEEEEeecCCCCCCCC------------CCCCCcEEEEEEcCCceEEEEeecCCCCCCccccEEEEeeeCCCCCceE
Q 021710           20 DLEITIICAKHLKNVNWRN------------GGDLKPYVVFYVDPAYRLATQSDDSGSTRPVWNERFTLPITHSVRESVL   87 (308)
Q Consensus        20 ~L~VtIisAk~L~~~~~~~------------~~~~dPYv~v~l~~~~k~kT~v~k~gt~nP~WnE~f~f~l~~~~~~~~L   87 (308)
                      .|+|+|++|++|+..+...            .+.+||||+|.+.+ .+.+|+++++ +.||+|||+|.|.+.....+..|
T Consensus         1 ~~~V~V~~A~dLp~~d~~~~~~~~~~~~~~~~~~~DPYV~V~~~g-~~~kT~v~~~-t~nPvWNE~f~f~v~~p~~~~~l   78 (151)
T cd04018           1 RFIFKIYRAEDLPQMDSGIMANVKKAFLGEKKELVDPYVEVSFAG-QKVKTSVKKN-SYNPEWNEQIVFPEMFPPLCERI   78 (151)
T ss_pred             CeEEEEEEeCCCCccChhhhccceeccccCCCCCcCcEEEEEECC-EeeecceEcC-CCCCCcceEEEEEeeCCCcCCEE
Confidence            3789999999999877432            01489999999987 6789999998 89999999999997543245689


Q ss_pred             EEEEEeccCCCCCCceeeeEEEeCcccccCCCCC--CCceeEEEEEeC
Q 021710           88 TLEIFHSKLSETPKPLVGSVKFPLAHLVDSDSSE--PTQYVRKLEVLR  133 (308)
Q Consensus        88 ~l~V~d~~~~~~~d~lLG~~~ipL~~L~~~~~~~--~~~~~~~~~L~~  133 (308)
                      .|+|||++. ..+|++||++.|+|.+|.......  ......|+.|-.
T Consensus        79 ~~~v~D~d~-~~~dd~iG~~~l~l~~l~~~~~~~~lp~~~p~W~~lyg  125 (151)
T cd04018          79 KIQIRDWDR-VGNDDVIGTHFIDLSKISNSGDEGFLPTFGPSFVNLYG  125 (151)
T ss_pred             EEEEEECCC-CCCCCEEEEEEEeHHHhccCCccccCCccCceEEEeec
Confidence            999999984 568999999999999987643210  001247888854

Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen

>cd08389 C2A_Synaptotagmin-14_16 C2A domain first repeat present in Synaptotagmins 14 and 16

Probab=99.68  E-value=4.6e-16  Score=127.38  Aligned_cols=105  Identities=20%  Similarity=0.297  Sum_probs=86.3

Q ss_pred             ccEEEEEEEEeecCCCCCCCCCCCCCcEEEEEEcC--CceEEEEeecCCCCCCccccEEEEe-eeC-CCCCceEEEEEEe
Q 021710           18 THDLEITIICAKHLKNVNWRNGGDLKPYVVFYVDP--AYRLATQSDDSGSTRPVWNERFTLP-ITH-SVRESVLTLEIFH   93 (308)
Q Consensus        18 ~~~L~VtIisAk~L~~~~~~~~~~~dPYv~v~l~~--~~k~kT~v~k~gt~nP~WnE~f~f~-l~~-~~~~~~L~l~V~d   93 (308)
                      ...|+|+|++|+||...+..+  ..||||++.+.+  ..+.+|+++++  .||+|||+|.|+ +.. .+.+..|.|+|||
T Consensus        15 ~~~L~V~Vi~a~nL~~~~~~~--~~d~yVk~~llp~~~~~~kTkv~~~--~nP~fnE~F~f~~i~~~~l~~~~L~~~V~~   90 (124)
T cd08389          15 ARKLTVTVIRAQDIPTKDRGG--ASSWQVHLVLLPSKKQRAKTKVQRG--PNPVFNETFTFSRVEPEELNNMALRFRLYG   90 (124)
T ss_pred             CCEEEEEEEEecCCCchhcCC--CCCcEEEEEEccCCcceeecccccC--CCCcccCEEEECCCCHHHhccCEEEEEEEE
Confidence            478999999999999888654  489999988854  45788988764  899999999998 553 2467889999999


Q ss_pred             ccCCCCCCceeeeEEEeCcccccCCCCCCCceeEEEEEe
Q 021710           94 SKLSETPKPLVGSVKFPLAHLVDSDSSEPTQYVRKLEVL  132 (308)
Q Consensus        94 ~~~~~~~d~lLG~~~ipL~~L~~~~~~~~~~~~~~~~L~  132 (308)
                      ++ ...++++||++.|+|+++....     ....|+.|.
T Consensus        91 ~~-~~~~~~~lG~~~i~L~~l~~~~-----~~~~w~~L~  123 (124)
T cd08389          91 VE-RMRKERLIGEKVVPLSQLNLEG-----ETTVWLTLE  123 (124)
T ss_pred             CC-CcccCceEEEEEEeccccCCCC-----CceEEEeCC
Confidence            98 4678999999999999996533     346899884

Synaptotagmin 14 and 16 are membrane-trafficking proteins in specific tissues outside the brain. Both of these contain C-terminal tandem C2 repeats, but only Synaptotagmin 14 has an N-terminal transmembrane domain and a putative fatty-acylation site. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium and this is indeed the case here. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicle

>cd04032 C2_Perforin C2 domain of Perforin

Probab=99.67  E-value=4.6e-16  Score=128.08  Aligned_cols=94  Identities=17%  Similarity=0.204  Sum_probs=79.5

Q ss_pred             cccEEEEEEEEeecCCCCCCCCCCCCCcEEEEEEcCCceEEEEeecCCCCCCccccEEEEeeeCCCCCceEEEEEEeccC
Q 021710           17 ITHDLEITIICAKHLKNVNWRNGGDLKPYVVFYVDPAYRLATQSDDSGSTRPVWNERFTLPITHSVRESVLTLEIFHSKL   96 (308)
Q Consensus        17 ~~~~L~VtIisAk~L~~~~~~~~~~~dPYv~v~l~~~~k~kT~v~k~gt~nP~WnE~f~f~l~~~~~~~~L~l~V~d~~~   96 (308)
                      ..++|+|+|++|++|.. +..+  .+||||+|.+.. .+.+|+++++ +.||+|||+|.|.+........|+|+|||++.
T Consensus        26 ~~~~L~V~V~~A~~L~~-d~~g--~~DPYVkV~~~~-~~~kT~vi~~-t~nPvWNE~F~f~~~~~~~~~~L~v~V~D~d~  100 (127)
T cd04032          26 GLATLTVTVLRATGLWG-DYFT--STDGYVKVFFGG-QEKRTEVIWN-NNNPRWNATFDFGSVELSPGGKLRFEVWDRDN  100 (127)
T ss_pred             CcEEEEEEEEECCCCCc-CcCC--CCCeEEEEEECC-ccccCceecC-CCCCcCCCEEEEecccCCCCCEEEEEEEeCCC
Confidence            35899999999999984 5555  489999999986 5999999998 89999999999985432246789999999983


Q ss_pred             CCCCCceeeeEEEeCccccc
Q 021710           97 SETPKPLVGSVKFPLAHLVD  116 (308)
Q Consensus        97 ~~~~d~lLG~~~ipL~~L~~  116 (308)
                       ...|++||++.|+|.....
T Consensus       101 -~s~dd~IG~~~i~l~~~~~  119 (127)
T cd04032         101 -GWDDDLLGTCSVVPEAGVH  119 (127)
T ss_pred             -CCCCCeeEEEEEEecCCce
Confidence             5689999999999997654

Perforin contains a single copy of a C2 domain in its C-terminus and plays a role in lymphocyte-mediated cytotoxicity. Mutations in perforin leads to familial hemophagocytic lymphohistiocytosis type 2. The function of perforin is calcium dependent and the C2 domain is thought to confer this binding to target cell membranes. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few

>PLN03008 Phospholipase D delta

Probab=99.67  E-value=5.4e-16  Score=158.60  Aligned_cols=125  Identities=23%  Similarity=0.421  Sum_probs=103.4

Q ss_pred             cccEEEEEEEEeecCCCCCCC-------------------------------C---------CCCCCcEEEEEEcCCceE
Q 021710           17 ITHDLEITIICAKHLKNVNWR-------------------------------N---------GGDLKPYVVFYVDPAYRL   56 (308)
Q Consensus        17 ~~~~L~VtIisAk~L~~~~~~-------------------------------~---------~~~~dPYv~v~l~~~~k~   56 (308)
                      ..++|+|+|.+|++|++.+++                               +         ..++||||+|.+...++.
T Consensus        12 lhg~l~~~i~ea~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tSDPYV~I~Lg~~rv~   91 (868)
T PLN03008         12 LHGDLDLKIVKARRLPNMDMFSEHLRRLFTACNACARPTDTDDVDPRDKGEFGDKNIRSHRKVITSDPYVTVVVPQATLA   91 (868)
T ss_pred             eecccEEEEEEcccCCchhHHHHHHHhhcccccccccccccccccccccccccccccccccccCCCCceEEEEECCccee
Confidence            368999999999999762210                               0         124799999999876678


Q ss_pred             EEEeecCCCCCCccccEEEEeeeCCCCCceEEEEEEeccCCCCCCceeeeEEEeCcccccCCCCCCCceeEEEEEeCCCC
Q 021710           57 ATQSDDSGSTRPVWNERFTLPITHSVRESVLTLEIFHSKLSETPKPLVGSVKFPLAHLVDSDSSEPTQYVRKLEVLRPSG  136 (308)
Q Consensus        57 kT~v~k~gt~nP~WnE~f~f~l~~~~~~~~L~l~V~d~~~~~~~d~lLG~~~ipL~~L~~~~~~~~~~~~~~~~L~~~sg  136 (308)
                      ||+|+++ +.||+|||+|+|.+...  ...|+|+|||++. . .+++||++.|+|++|..+.     ....|++|.+.++
T Consensus        92 RTrVi~n-~~NPvWNE~F~f~vah~--~s~L~f~VkD~D~-~-gaD~IG~a~IPL~~L~~Ge-----~vd~Wl~Ll~~~~  161 (868)
T PLN03008         92 RTRVLKN-SQEPLWDEKFNISIAHP--FAYLEFQVKDDDV-F-GAQIIGTAKIPVRDIASGE-----RISGWFPVLGASG  161 (868)
T ss_pred             eEEeCCC-CCCCCcceeEEEEecCC--CceEEEEEEcCCc-c-CCceeEEEEEEHHHcCCCC-----ceEEEEEccccCC
Confidence            9999988 89999999999999873  5689999999883 3 5789999999999998754     3469999998877


Q ss_pred             CC---ccEEEEEEEEccC
Q 021710          137 RP---QGKIRVKLVLNGR  151 (308)
Q Consensus       137 ~~---~G~L~v~v~~~~~  151 (308)
                      ++   .++|+|++.|.+.
T Consensus       162 kp~k~~~kl~v~lqf~pv  179 (868)
T PLN03008        162 KPPKAETAIFIDMKFTPF  179 (868)
T ss_pred             CCCCCCcEEEEEEEEEEc
Confidence            65   5799999999885

>cd04020 C2B_SLP_1-2-3-4 C2 domain second repeat present in Synaptotagmin-like proteins 1-4

Probab=99.67  E-value=7.8e-16  Score=131.87  Aligned_cols=107  Identities=20%  Similarity=0.293  Sum_probs=87.1

Q ss_pred             cccEEEEEEEEeecCCCCCCCCCCCCCcEEEEEEcC----CceEEEEeecCCCCCCccccEEEEeeeC--CCCCceEEEE
Q 021710           17 ITHDLEITIICAKHLKNVNWRNGGDLKPYVVFYVDP----AYRLATQSDDSGSTRPVWNERFTLPITH--SVRESVLTLE   90 (308)
Q Consensus        17 ~~~~L~VtIisAk~L~~~~~~~~~~~dPYv~v~l~~----~~k~kT~v~k~gt~nP~WnE~f~f~l~~--~~~~~~L~l~   90 (308)
                      ..+.|+|+|++|+||...+..+  .+||||++.+.+    ..+++|+++++ +.||+|||+|.|.+..  .+.+..|.|+
T Consensus        25 ~~g~L~V~Vi~A~nL~~~d~~g--~~DPYVkv~l~~~~~~~~~~kT~vi~~-t~nP~WnE~f~f~~~~~~~l~~~~L~i~  101 (162)
T cd04020          25 STGELHVWVKEAKNLPALKSGG--TSDSFVKCYLLPDKSKKSKQKTPVVKK-SVNPVWNHTFVYDGVSPEDLSQACLELT  101 (162)
T ss_pred             CCceEEEEEEeeeCCCCCCCCC--CCCCEEEEEEEcCCCCCcceeCCccCC-CCCCCCCCEEEEecCCHHHhCCCEEEEE
Confidence            4589999999999999888765  499999999843    35889999998 8999999999998532  2345689999


Q ss_pred             EEeccCCCCCCceeeeEEEeCcccccCCCCCCCceeEEEEEe
Q 021710           91 IFHSKLSETPKPLVGSVKFPLAHLVDSDSSEPTQYVRKLEVL  132 (308)
Q Consensus        91 V~d~~~~~~~d~lLG~~~ipL~~L~~~~~~~~~~~~~~~~L~  132 (308)
                      |||++. ..++++||++.|.+.++.....     ...|+.|.
T Consensus       102 V~d~d~-~~~d~~lG~v~i~l~~~~~~~~-----~~~w~~~~  137 (162)
T cd04020         102 VWDHDK-LSSNDFLGGVRLGLGTGKSYGQ-----AVDWMDST  137 (162)
T ss_pred             EEeCCC-CCCCceEEEEEEeCCccccCCC-----ccccccCC
Confidence            999983 5679999999999999875432     24677664

All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. Slp1/JFC1 and Slp2/exophilin 4 promote granule docking to the plasma membrane. Additionally, their C2A domains are both Ca2+ independent, unlike the case in Slp3 and Slp4/granuphilin in which their C2A domains are Ca2+ dependent. It is thought that SHD (except for the Slp4-SHD) functions as a specific Rab27A/B-binding domain. In addition to Slps, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. It has been demonstrated that Slp3 and Slp4/granuphilin promote dense-core vesicle exocytosis. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involvin

>cd08383 C2A_RasGAP C2 domain (first repeat) of Ras GTPase activating proteins (GAPs)

Probab=99.66  E-value=1.9e-15  Score=121.46  Aligned_cols=113  Identities=19%  Similarity=0.264  Sum_probs=84.8

Q ss_pred             EEEEEEEeecCCCCCCCCCCCCCcEEEEEEcCCceEEEEeecCCCCCCccccEEEEeeeCC-CCCceEEEEEEeccCCCC
Q 021710           21 LEITIICAKHLKNVNWRNGGDLKPYVVFYVDPAYRLATQSDDSGSTRPVWNERFTLPITHS-VRESVLTLEIFHSKLSET   99 (308)
Q Consensus        21 L~VtIisAk~L~~~~~~~~~~~dPYv~v~l~~~~k~kT~v~k~gt~nP~WnE~f~f~l~~~-~~~~~L~l~V~d~~~~~~   99 (308)
                      |+|+|++|++|+..   +  .+||||+++++...+.+|+++++  .||+|||+|.|.+... +....|.|.|||.+. ..
T Consensus         2 L~v~vi~a~~l~~~---~--~~dpyv~v~~~~~~~~kT~~~~~--~~P~Wne~f~f~v~~~~~~~~~l~i~v~d~~~-~~   73 (117)
T cd08383           2 LRLRILEAKNLPSK---G--TRDPYCTVSLDQVEVARTKTVEK--LNPFWGEEFVFDDPPPDVTFFTLSFYNKDKRS-KD   73 (117)
T ss_pred             eEEEEEEecCCCcC---C--CCCceEEEEECCEEeEecceEEC--CCCcccceEEEecCCccccEEEEEEEEEeccc-CC
Confidence            78999999999876   3  49999999998755689999876  8999999999998763 234678888888763 33


Q ss_pred             CCceeeeEEEeCcccccCCCCCCCceeEEEEEeCCC--CCCccEEEEEEEE
Q 021710          100 PKPLVGSVKFPLAHLVDSDSSEPTQYVRKLEVLRPS--GRPQGKIRVKLVL  148 (308)
Q Consensus       100 ~d~lLG~~~ipL~~L~~~~~~~~~~~~~~~~L~~~s--g~~~G~L~v~v~~  148 (308)
                      .+.++|.+  +|..+..+.     ....||+|...+  +...|+|+|+++|
T Consensus        74 ~~~~~g~v--~l~~~~~~~-----~~~~w~~L~~~~~~~~~~G~l~l~~~~  117 (117)
T cd08383          74 RDIVIGKV--ALSKLDLGQ-----GKDEWFPLTPVDPDSEVQGSVRLRARY  117 (117)
T ss_pred             CeeEEEEE--EecCcCCCC-----cceeEEECccCCCCCCcCceEEEEEEC
Confidence            45556654  455544322     346899997543  3458999999975

RasGAPs suppress Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. The proteins here all contain either a single C2 domain or two tandem C2 domains, a Ras-GAP domain, and a pleckstrin homology (PH)-like domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2

>cd08675 C2B_RasGAP C2 domain second repeat of Ras GTPase activating proteins (GAPs)

Probab=99.66  E-value=9.6e-16  Score=127.72  Aligned_cols=104  Identities=16%  Similarity=0.293  Sum_probs=86.7

Q ss_pred             EEEEEEEeecCCCCCCCCCCCCCcEEEEEEcC---CceEEEEeecCCCCCCccccEEEEeeeCC--------------CC
Q 021710           21 LEITIICAKHLKNVNWRNGGDLKPYVVFYVDP---AYRLATQSDDSGSTRPVWNERFTLPITHS--------------VR   83 (308)
Q Consensus        21 L~VtIisAk~L~~~~~~~~~~~dPYv~v~l~~---~~k~kT~v~k~gt~nP~WnE~f~f~l~~~--------------~~   83 (308)
                      |+|+|++|++|... ..+  .+||||++++..   ..+.+|+++++ +.||+|||+|.|.+...              +.
T Consensus         1 L~V~Vi~A~~L~~~-~~g--~~dPyv~v~~~~~~~~~~~rT~vv~~-t~nP~Wne~f~f~~~~~~~~~~~~~~~~~~~~~   76 (137)
T cd08675           1 LSVRVLECRDLALK-SNG--TCDPFARVTLNYSSKTDTKRTKVKKK-TNNPRFDEAFYFELTIGFSYEKKSFKVEEEDLE   76 (137)
T ss_pred             CEEEEEEccCCCcc-cCC--CCCcEEEEEEecCCcCCeeccceeeC-CCCCCcceEEEEEcccccccccccccccccccc
Confidence            67999999999887 554  499999999984   47899999998 89999999999998753              13


Q ss_pred             CceEEEEEEeccCCCCCCceeeeEEEeCcccccCCCCCCCceeEEEEEeCC
Q 021710           84 ESVLTLEIFHSKLSETPKPLVGSVKFPLAHLVDSDSSEPTQYVRKLEVLRP  134 (308)
Q Consensus        84 ~~~L~l~V~d~~~~~~~d~lLG~~~ipL~~L~~~~~~~~~~~~~~~~L~~~  134 (308)
                      ...|.|+|||++. ...++|||++.|+|+++....     ....||.|...
T Consensus        77 ~~~l~i~V~d~~~-~~~~~~IG~~~i~l~~l~~~~-----~~~~W~~L~~~  121 (137)
T cd08675          77 KSELRVELWHASM-VSGDDFLGEVRIPLQGLQQAG-----SHQAWYFLQPR  121 (137)
T ss_pred             ccEEEEEEEcCCc-CcCCcEEEEEEEehhhccCCC-----cccceEecCCc
Confidence            5689999999983 568999999999999988543     23689999754

RasGAPs suppress Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. The proteins here all contain two tandem C2 domains, a Ras-GAP domain, and a pleckstrin homology (PH)-like domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin

>cd04009 C2B_Munc13-like C2 domain second repeat in Munc13 (mammalian uncoordinated)-like proteins

Probab=99.66  E-value=9.6e-16  Score=126.81  Aligned_cols=98  Identities=17%  Similarity=0.302  Sum_probs=83.0

Q ss_pred             ccEEEEEEEEeecCCCCCCCCCCCCCcEEEEEEcC------CceEEEEeecCCCCCCccccEEEEeeeCC---CCCceEE
Q 021710           18 THDLEITIICAKHLKNVNWRNGGDLKPYVVFYVDP------AYRLATQSDDSGSTRPVWNERFTLPITHS---VRESVLT   88 (308)
Q Consensus        18 ~~~L~VtIisAk~L~~~~~~~~~~~dPYv~v~l~~------~~k~kT~v~k~gt~nP~WnE~f~f~l~~~---~~~~~L~   88 (308)
                      ...|+|+|++|++|+..+..+.  +||||+|.+.+      ..+.+|+++++ +.||+|||+|.|.+...   ..+..|.
T Consensus        15 ~~~L~V~Vi~A~~L~~~~~~g~--~dPyv~v~l~~~~~~~~~~~~kT~v~~~-t~nP~wnE~f~f~i~~~~~~~~~~~l~   91 (133)
T cd04009          15 EQSLRVEILNARNLLPLDSNGS--SDPFVKVELLPRHLFPDVPTPKTQVKKK-TLFPLFDESFEFNVPPEQCSVEGALLL   91 (133)
T ss_pred             CCEEEEEEEEeeCCCCcCCCCC--CCCEEEEEEECCCcCccccccccccCcC-CCCCccCCEEEEEechhhcccCCCEEE
Confidence            4789999999999998877654  99999999963      35789999998 89999999999998752   2456899


Q ss_pred             EEEEeccCCCCCCceeeeEEEeCcccccCCC
Q 021710           89 LEIFHSKLSETPKPLVGSVKFPLAHLVDSDS  119 (308)
Q Consensus        89 l~V~d~~~~~~~d~lLG~~~ipL~~L~~~~~  119 (308)
                      |+|||++ ...++++||++.|+|++|..-.+
T Consensus        92 ~~V~d~d-~~~~d~~iG~~~i~l~~l~~~~~  121 (133)
T cd04009          92 FTVKDYD-LLGSNDFEGEAFLPLNDIPGVED  121 (133)
T ss_pred             EEEEecC-CCCCCcEeEEEEEeHHHCCcccc
Confidence            9999998 45679999999999999985443

C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, s

>cd08676 C2A_Munc13-like C2 domain first repeat in Munc13 (mammalian uncoordinated)-like proteins

Probab=99.66  E-value=1.1e-15  Score=129.63  Aligned_cols=103  Identities=25%  Similarity=0.415  Sum_probs=85.5

Q ss_pred             CCCcccEEEEEEEEeecCCCCCCCCCCCCCcEEEEEEcCC----------------------------ceEEEEeecCCC
Q 021710           14 SSPITHDLEITIICAKHLKNVNWRNGGDLKPYVVFYVDPA----------------------------YRLATQSDDSGS   65 (308)
Q Consensus        14 ~~~~~~~L~VtIisAk~L~~~~~~~~~~~dPYv~v~l~~~----------------------------~k~kT~v~k~gt   65 (308)
                      ..++...|+|+|++|++|...+..+.  +||||+|.+.+.                            ...+|+++++ +
T Consensus        23 ~~~~~~~L~V~vi~a~~L~~~d~~g~--~DPyv~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kT~v~~~-t   99 (153)
T cd08676          23 AEPPIFVLKVTVIEAKGLLAKDVNGF--SDPYCMLGIVPASRERNSEKSKKRKSHRKKAVLKDTVPAKSIKVTEVKPQ-T   99 (153)
T ss_pred             cCCCeEEEEEEEEeccCCcccCCCCC--CCceEEEEEcccccccccccccccccccccccccccccccccEecceecC-C
Confidence            34557999999999999999887764  999999998631                            2478999988 9


Q ss_pred             CCCccccEEEEeeeCCCCCceEEEEEEeccCCCCCCceeeeEEEeCcccccCCCCCCCceeEEEEE
Q 021710           66 TRPVWNERFTLPITHSVRESVLTLEIFHSKLSETPKPLVGSVKFPLAHLVDSDSSEPTQYVRKLEV  131 (308)
Q Consensus        66 ~nP~WnE~f~f~l~~~~~~~~L~l~V~d~~~~~~~d~lLG~~~ipL~~L~~~~~~~~~~~~~~~~L  131 (308)
                      .||+|||+|.|.+... ....|.|+|||++     +++||++.|+|++|... .     ...||.|
T Consensus       100 lnP~WnE~F~f~v~~~-~~~~L~i~V~D~d-----d~~IG~v~i~l~~l~~~-~-----~d~W~~L  153 (153)
T cd08676         100 LNPVWNETFRFEVEDV-SNDQLHLDIWDHD-----DDFLGCVNIPLKDLPSC-G-----LDSWFKL  153 (153)
T ss_pred             CCCccccEEEEEeccC-CCCEEEEEEEecC-----CCeEEEEEEEHHHhCCC-C-----CCCeEeC
Confidence            9999999999999753 4678999999986     78999999999999832 2     2589876

C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, sy

>cd08384 C2B_Rabphilin_Doc2 C2 domain second repeat present in Rabphilin and Double C2 domain

Probab=99.65  E-value=4e-16  Score=128.68  Aligned_cols=110  Identities=19%  Similarity=0.362  Sum_probs=88.3

Q ss_pred             ccEEEEEEEEeecCCCCCCCCCCCCCcEEEEEEcC----CceEEEEeecCCCCCCccccEEEEeeeCC-CCCceEEEEEE
Q 021710           18 THDLEITIICAKHLKNVNWRNGGDLKPYVVFYVDP----AYRLATQSDDSGSTRPVWNERFTLPITHS-VRESVLTLEIF   92 (308)
Q Consensus        18 ~~~L~VtIisAk~L~~~~~~~~~~~dPYv~v~l~~----~~k~kT~v~k~gt~nP~WnE~f~f~l~~~-~~~~~L~l~V~   92 (308)
                      .+.|.|+|++|++|...+..+.  +||||++.+.+    ..+.+|+++++ +.||+|||+|.|.+... +....|.|+||
T Consensus        12 ~~~L~V~Vi~a~~L~~~d~~~~--~DpyV~v~l~~~~~~~~~~kT~v~~~-t~nP~wne~f~f~~~~~~l~~~~l~~~V~   88 (133)
T cd08384          12 RRGLIVGIIRCVNLAAMDANGY--SDPFVKLYLKPDAGKKSKHKTQVKKK-TLNPEFNEEFFYDIKHSDLAKKTLEITVW   88 (133)
T ss_pred             CCEEEEEEEEEcCCCCcCCCCC--CCcEEEEEEEcCCCccCCceeeeEec-cCCCCcccEEEEECCHHHhCCCEEEEEEE
Confidence            5899999999999998887664  99999999954    24789999998 99999999999998752 34568999999


Q ss_pred             eccCCCCCCceeeeEEEeCcccccCCCCCCCceeEEEEEeCCCCCC
Q 021710           93 HSKLSETPKPLVGSVKFPLAHLVDSDSSEPTQYVRKLEVLRPSGRP  138 (308)
Q Consensus        93 d~~~~~~~d~lLG~~~ipL~~L~~~~~~~~~~~~~~~~L~~~sg~~  138 (308)
                      |++ ...++++||++.|++...-  .     ....|+++++..+++
T Consensus        89 d~d-~~~~~~~lG~~~i~l~~~~--~-----~~~~W~~~l~~~~~~  126 (133)
T cd08384          89 DKD-IGKSNDYIGGLQLGINAKG--E-----RLRHWLDCLKNPDKK  126 (133)
T ss_pred             eCC-CCCCccEEEEEEEecCCCC--c-----hHHHHHHHHhCCCCC
Confidence            988 3567899999999997521  1     335788887544443

Rabphilin is found neurons and in neuroendrocrine cells, while Doc2 is found not only in the brain but in tissues, including mast cells, chromaffin cells, and osteoblasts. Rabphilin and Doc2s share highly homologous tandem C2 domains, although their N-terminal structures are completely different: rabphilin contains an N-terminal Rab-binding domain (RBD),7 whereas Doc2 contains an N-terminal Munc13-1-interacting domain (MID). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domai

>cd04038 C2_ArfGAP C2 domain present in Arf GTPase Activating Proteins (GAP)

Probab=99.65  E-value=1.5e-15  Score=127.84  Aligned_cols=91  Identities=24%  Similarity=0.461  Sum_probs=81.1

Q ss_pred             cEEEEEEEEeecCCCCCCCCCCCCCcEEEEEEcCCceEEEEeecCCCCCCccccEEEEeeeCCCCCceEEEEEEeccCCC
Q 021710           19 HDLEITIICAKHLKNVNWRNGGDLKPYVVFYVDPAYRLATQSDDSGSTRPVWNERFTLPITHSVRESVLTLEIFHSKLSE   98 (308)
Q Consensus        19 ~~L~VtIisAk~L~~~~~~~~~~~dPYv~v~l~~~~k~kT~v~k~gt~nP~WnE~f~f~l~~~~~~~~L~l~V~d~~~~~   98 (308)
                      +.|+|+|++|++|...+. +  .+||||++.+.. .+.+|+++++ +.||+|||+|.|.+...  ...|.|+|||++ ..
T Consensus         2 G~L~V~Vi~a~nL~~~d~-~--~sDPYV~v~~g~-~~~kT~vvk~-t~nP~WnE~f~f~i~~~--~~~l~~~V~D~d-~~   73 (145)
T cd04038           2 GLLKVRVVRGTNLAVRDF-T--SSDPYVVLTLGN-QKVKTRVIKK-NLNPVWNEELTLSVPNP--MAPLKLEVFDKD-TF   73 (145)
T ss_pred             eEEEEEEEeeECCCCCCC-C--CcCcEEEEEECC-EEEEeeeEcC-CCCCeecccEEEEecCC--CCEEEEEEEECC-CC
Confidence            679999999999998876 4  499999999986 7899999998 99999999999999874  678999999998 36


Q ss_pred             CCCceeeeEEEeCcccccC
Q 021710           99 TPKPLVGSVKFPLAHLVDS  117 (308)
Q Consensus        99 ~~d~lLG~~~ipL~~L~~~  117 (308)
                      ..|++||++.++|+++...
T Consensus        74 ~~dd~iG~a~i~l~~l~~~   92 (145)
T cd04038          74 SKDDSMGEAEIDLEPLVEA   92 (145)
T ss_pred             CCCCEEEEEEEEHHHhhhh
Confidence            6889999999999998764

ArfGAP is a GTPase activating protein which regulates the ADP ribosylation factor Arf, a member of the Ras superfamily of GTP-binding proteins. The GTP-bound form of Arf is involved in Golgi morphology and is involved in recruiting coat proteins. ArfGAP is responsible for the GDP-bound form of Arf which is necessary for uncoating the membrane and allowing the Golgi to fuse with an acceptor compartment. These proteins contain an N-terminal ArfGAP domain containing the characteristic zinc finger motif (Cys-x2-Cys-x(16,17)-x2-Cys) and C-terminal C2 domain. C2 domains were first identified in Protein Kinase C (PKC). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances i

>cd04026 C2_PKC_alpha_gamma C2 domain in Protein Kinase C (PKC) alpha and gamma

Probab=99.65  E-value=1.7e-15  Score=124.59  Aligned_cols=107  Identities=22%  Similarity=0.389  Sum_probs=89.6

Q ss_pred             ccEEEEEEEEeecCCCCCCCCCCCCCcEEEEEEcC----CceEEEEeecCCCCCCccccEEEEeeeCCCCCceEEEEEEe
Q 021710           18 THDLEITIICAKHLKNVNWRNGGDLKPYVVFYVDP----AYRLATQSDDSGSTRPVWNERFTLPITHSVRESVLTLEIFH   93 (308)
Q Consensus        18 ~~~L~VtIisAk~L~~~~~~~~~~~dPYv~v~l~~----~~k~kT~v~k~gt~nP~WnE~f~f~l~~~~~~~~L~l~V~d   93 (308)
                      ...|+|+|++|++|+..+..+  ..||||++.+.+    ..+.+|+++++ +.+|.|||+|.|.+........|.|+|||
T Consensus        12 ~~~l~v~i~~a~nL~~~~~~~--~~dpyv~v~~~~~~~~~~~~rT~v~~~-~~~P~wne~f~~~~~~~~~~~~l~v~v~d   88 (131)
T cd04026          12 DNKLTVEVREAKNLIPMDPNG--LSDPYVKLKLIPDPKNETKQKTKTIKK-TLNPVWNETFTFDLKPADKDRRLSIEVWD   88 (131)
T ss_pred             CCEEEEEEEEeeCCCCcCCCC--CCCCcEEEEEEcCCCCCceecceeecC-CCCCCccceEEEeCCchhcCCEEEEEEEE
Confidence            378999999999999877665  499999999963    36899999998 89999999999998763235689999999


Q ss_pred             ccCCCCCCceeeeEEEeCcccccCCCCCCCceeEEEEEeCC
Q 021710           94 SKLSETPKPLVGSVKFPLAHLVDSDSSEPTQYVRKLEVLRP  134 (308)
Q Consensus        94 ~~~~~~~d~lLG~~~ipL~~L~~~~~~~~~~~~~~~~L~~~  134 (308)
                      ++ ....+++||++.++|+++... .     ...||+|.+.
T Consensus        89 ~~-~~~~~~~iG~~~~~l~~l~~~-~-----~~~w~~L~~~  122 (131)
T cd04026          89 WD-RTTRNDFMGSLSFGVSELIKM-P-----VDGWYKLLNQ  122 (131)
T ss_pred             CC-CCCCcceeEEEEEeHHHhCcC-c-----cCceEECcCc
Confidence            88 356889999999999999864 2     2589999764

A single C2 domain is found in PKC alpha and gamma. The PKC family of serine/threonine kinases regulates apoptosis, proliferation, migration, motility, chemo-resistance, and differentiation. There are 3 groups: group 1(alpha, betaI, beta II, gamma) which require phospholipids and calcium, group 2 (delta, epsilon, theta, eta) which do not require calcium for activation, and group 3 (xi, iota/lambda) which are atypical and can be activated in the absence of diacylglycerol and calcium. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transd

>cd08404 C2B_Synaptotagmin-4 C2 domain second repeat present in Synaptotagmin 4

Probab=99.64  E-value=5.1e-16  Score=128.79  Aligned_cols=111  Identities=20%  Similarity=0.293  Sum_probs=88.6

Q ss_pred             ccEEEEEEEEeecCCCCCCCCCCCCCcEEEEEEcCC----ceEEEEeecCCCCCCccccEEEEeeeCC-CCCceEEEEEE
Q 021710           18 THDLEITIICAKHLKNVNWRNGGDLKPYVVFYVDPA----YRLATQSDDSGSTRPVWNERFTLPITHS-VRESVLTLEIF   92 (308)
Q Consensus        18 ~~~L~VtIisAk~L~~~~~~~~~~~dPYv~v~l~~~----~k~kT~v~k~gt~nP~WnE~f~f~l~~~-~~~~~L~l~V~   92 (308)
                      ...|.|+|++|++|...+..+.  +||||++.+...    .+.+|+++++ +.||+|||+|.|.+... +....|.|+||
T Consensus        14 ~~~L~V~vi~a~~L~~~d~~g~--~Dpyv~v~l~~~~~~~~~~kT~v~k~-t~nP~w~e~F~f~v~~~~~~~~~l~~~v~   90 (136)
T cd08404          14 TNRLTVVVLKARHLPKMDVSGL--ADPYVKVNLYYGKKRISKKKTHVKKC-TLNPVFNESFVFDIPSEELEDISVEFLVL   90 (136)
T ss_pred             CCeEEEEEEEeeCCCccccCCC--CCeEEEEEEEcCCceeeeEcCccccC-CCCCccCceEEEECCHHHhCCCEEEEEEE
Confidence            4789999999999999887764  999999998542    3678999988 99999999999998642 34567999999


Q ss_pred             eccCCCCCCceeeeEEEeCcccccCCCCCCCceeEEEEEeCCCCCCc
Q 021710           93 HSKLSETPKPLVGSVKFPLAHLVDSDSSEPTQYVRKLEVLRPSGRPQ  139 (308)
Q Consensus        93 d~~~~~~~d~lLG~~~ipL~~L~~~~~~~~~~~~~~~~L~~~sg~~~  139 (308)
                      |++ ...++++||++.|++.. . ..     ....|+.|.+..+++.
T Consensus        91 d~d-~~~~~~~iG~~~~~~~~-~-~~-----~~~~w~~l~~~~~~~i  129 (136)
T cd08404          91 DSD-RVTKNEVIGRLVLGPKA-S-GS-----GGHHWKEVCNPPRRQI  129 (136)
T ss_pred             ECC-CCCCCccEEEEEECCcC-C-Cc-----hHHHHHHHHhCCCCee
Confidence            998 46789999999999988 2 21     2247888876555543

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 4, a member of class 4 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmin-11, has an Asp to Ser substitution in its C2A domain. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling s

>KOG0696 consensus Serine/threonine protein kinase [Signal transduction mechanisms]

Probab=99.63  E-value=1.1e-16  Score=151.84  Aligned_cols=108  Identities=24%  Similarity=0.371  Sum_probs=95.7

Q ss_pred             cccEEEEEEEEeecCCCCCCCCCCCCCcEEEEEEcC----CceEEEEeecCCCCCCccccEEEEeeeCCCCCceEEEEEE
Q 021710           17 ITHDLEITIICAKHLKNVNWRNGGDLKPYVVFYVDP----AYRLATQSDDSGSTRPVWNERFTLPITHSVRESVLTLEIF   92 (308)
Q Consensus        17 ~~~~L~VtIisAk~L~~~~~~~~~~~dPYv~v~l~~----~~k~kT~v~k~gt~nP~WnE~f~f~l~~~~~~~~L~l~V~   92 (308)
                      ....|+|+|.+|+||...+..+.  +||||++.+.+    ..+++|++++. ++||+|||+|+|.+.....+..|.|+||
T Consensus       178 ~~~~l~v~i~ea~NLiPMDpNGl--SDPYvk~kliPD~~~~sKqKTkTik~-~LNP~wNEtftf~Lkp~DkdrRlsiEvW  254 (683)
T KOG0696|consen  178 KRDVLTVTIKEAKNLIPMDPNGL--SDPYVKLKLIPDPKNESKQKTKTIKA-TLNPVWNETFTFKLKPSDKDRRLSIEVW  254 (683)
T ss_pred             cCceEEEEehhhccccccCCCCC--CCcceeEEeccCCcchhhhhhhhhhh-hcCccccceeEEecccccccceeEEEEe
Confidence            34679999999999999998775  99999999965    35899999999 9999999999999998778899999999


Q ss_pred             eccCCCCCCceeeeEEEeCcccccCCCCCCCceeEEEEEeCC
Q 021710           93 HSKLSETPKPLVGSVKFPLAHLVDSDSSEPTQYVRKLEVLRP  134 (308)
Q Consensus        93 d~~~~~~~d~lLG~~~ipL~~L~~~~~~~~~~~~~~~~L~~~  134 (308)
                      ||| +..+++|+|+..+.|++|....      ...||.|++.
T Consensus       255 DWD-rTsRNDFMGslSFgisEl~K~p------~~GWyKlLsq  289 (683)
T KOG0696|consen  255 DWD-RTSRNDFMGSLSFGISELQKAP------VDGWYKLLSQ  289 (683)
T ss_pred             ccc-ccccccccceecccHHHHhhcc------hhhHHHHhhh
Confidence            999 6789999999999999998854      3589999864

>cd04037 C2E_Ferlin C2 domain fifth repeat in Ferlin

Probab=99.63  E-value=2.2e-15  Score=123.31  Aligned_cols=92  Identities=15%  Similarity=0.217  Sum_probs=78.2

Q ss_pred             EEEEEEEEeecCCCCCCCCCCCCCcEEEEEEcCC-ceEEEEeecCCCCCCccccEEEEeeeCCCCCceEEEEEEeccCCC
Q 021710           20 DLEITIICAKHLKNVNWRNGGDLKPYVVFYVDPA-YRLATQSDDSGSTRPVWNERFTLPITHSVRESVLTLEIFHSKLSE   98 (308)
Q Consensus        20 ~L~VtIisAk~L~~~~~~~~~~~dPYv~v~l~~~-~k~kT~v~k~gt~nP~WnE~f~f~l~~~~~~~~L~l~V~d~~~~~   98 (308)
                      .|+|+|++|++|...+..+.  +||||++.+... .+.+|+++++ +.||+|||+|.|.+... ....|.|+|||++ ..
T Consensus         1 ~lrV~Vi~a~~L~~~d~~g~--~DPYv~v~~~~~~~~~kT~~v~~-t~nP~Wne~f~f~~~~~-~~~~L~~~V~d~d-~~   75 (124)
T cd04037           1 LVRVYVVRARNLQPKDPNGK--SDPYLKIKLGKKKINDRDNYIPN-TLNPVFGKMFELEATLP-GNSILKISVMDYD-LL   75 (124)
T ss_pred             CEEEEEEECcCCCCCCCCCC--CCcEEEEEECCeeccceeeEEEC-CCCCccceEEEEEecCC-CCCEEEEEEEECC-CC
Confidence            37999999999999887764  999999999763 2467888888 99999999999987643 4678999999998 35


Q ss_pred             CCCceeeeEEEeCccccc
Q 021710           99 TPKPLVGSVKFPLAHLVD  116 (308)
Q Consensus        99 ~~d~lLG~~~ipL~~L~~  116 (308)
                      ..|++||++.|+|++...
T Consensus        76 ~~dd~iG~~~i~l~~~~~   93 (124)
T cd04037          76 GSDDLIGETVIDLEDRFF   93 (124)
T ss_pred             CCCceeEEEEEeeccccc
Confidence            689999999999998764

Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen

>cd08407 C2B_Synaptotagmin-13 C2 domain second repeat present in Synaptotagmin 13

Probab=99.62  E-value=2.4e-15  Score=125.52  Aligned_cols=94  Identities=19%  Similarity=0.267  Sum_probs=78.7

Q ss_pred             ccEEEEEEEEeecCCCCCCCCCCCCCcEEEEEEcCC----ceEEEEeecCCCCCCccccEEEEeeeCC-CCCceEEEEEE
Q 021710           18 THDLEITIICAKHLKNVNWRNGGDLKPYVVFYVDPA----YRLATQSDDSGSTRPVWNERFTLPITHS-VRESVLTLEIF   92 (308)
Q Consensus        18 ~~~L~VtIisAk~L~~~~~~~~~~~dPYv~v~l~~~----~k~kT~v~k~gt~nP~WnE~f~f~l~~~-~~~~~L~l~V~   92 (308)
                      .+.|.|+|++|+||...+......+||||+|++.+.    .+.||++.++ +.||+|||.|.|.+... +.+..|.|+||
T Consensus        14 ~~~L~V~V~karnL~~~d~~~~~~~DpYVKv~l~~~~~k~~kkkT~v~k~-t~nPvfNE~f~F~v~~~~L~~~~L~~~V~   92 (138)
T cd08407          14 ANRLLVVVIKAKNLHSDQLKLLLGIDVSVKVTLKHQNAKLKKKQTKRAKH-KINPVWNEMIMFELPSELLAASSVELEVL   92 (138)
T ss_pred             CCeEEEEEEEecCCCccccCCCCCCCeEEEEEEEcCCcccceeccceeeC-CCCCccccEEEEECCHHHhCccEEEEEEE
Confidence            478999999999999887331113899999998652    3679999998 99999999999999863 56788999999


Q ss_pred             eccCCCCCCceeeeEEEeCcc
Q 021710           93 HSKLSETPKPLVGSVKFPLAH  113 (308)
Q Consensus        93 d~~~~~~~d~lLG~~~ipL~~  113 (308)
                      |++ ..+++++||++.|.+..
T Consensus        93 d~d-~~~~~d~iG~v~lg~~~  112 (138)
T cd08407          93 NQD-SPGQSLPLGRCSLGLHT  112 (138)
T ss_pred             eCC-CCcCcceeceEEecCcC
Confidence            998 46789999999999864

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 13, a member of class 6 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmins 8 and 12, does not have any consensus Ca2+ binding sites. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recy

>cd08405 C2B_Synaptotagmin-7 C2 domain second repeat present in Synaptotagmin 7

Probab=99.62  E-value=3.9e-15  Score=123.42  Aligned_cols=109  Identities=19%  Similarity=0.306  Sum_probs=85.7

Q ss_pred             ccEEEEEEEEeecCCCCCCCCCCCCCcEEEEEEcC----CceEEEEeecCCCCCCccccEEEEeeeCC-CCCceEEEEEE
Q 021710           18 THDLEITIICAKHLKNVNWRNGGDLKPYVVFYVDP----AYRLATQSDDSGSTRPVWNERFTLPITHS-VRESVLTLEIF   92 (308)
Q Consensus        18 ~~~L~VtIisAk~L~~~~~~~~~~~dPYv~v~l~~----~~k~kT~v~k~gt~nP~WnE~f~f~l~~~-~~~~~L~l~V~   92 (308)
                      .+.|+|+|++|++|...+..+.  +||||++.+..    ..+.+|+++++ +.||+|||+|.|.+... +.+..|.|+||
T Consensus        14 ~~~L~v~vi~a~~L~~~~~~g~--~dpyV~v~l~~~~~~~~~~kT~v~~~-t~~P~wne~F~f~i~~~~~~~~~l~~~v~   90 (136)
T cd08405          14 ANRITVNIIKARNLKAMDINGT--SDPYVKVWLMYKDKRVEKKKTVIKKR-TLNPVFNESFIFNIPLERLRETTLIITVM   90 (136)
T ss_pred             CCeEEEEEEEeeCCCccccCCC--CCceEEEEEEeCCCccccccCcceeC-CCCCcccceEEEeCCHHHhCCCEEEEEEE
Confidence            4789999999999998877664  99999999842    24678999998 89999999999998642 34568999999


Q ss_pred             eccCCCCCCceeeeEEEeCcccccCCCCCCCceeEEEEEeCCCCC
Q 021710           93 HSKLSETPKPLVGSVKFPLAHLVDSDSSEPTQYVRKLEVLRPSGR  137 (308)
Q Consensus        93 d~~~~~~~d~lLG~~~ipL~~L~~~~~~~~~~~~~~~~L~~~sg~  137 (308)
                      |.+ ...++++||++.|++.+.-.       ....|++++...++
T Consensus        91 d~~-~~~~~~~lG~~~i~~~~~~~-------~~~~w~~~~~~~~~  127 (136)
T cd08405          91 DKD-RLSRNDLIGKIYLGWKSGGL-------ELKHWKDMLSKPRQ  127 (136)
T ss_pred             ECC-CCCCCcEeEEEEECCccCCc-------hHHHHHHHHhCCCC
Confidence            998 45688999999999987511       22456666654443

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 7, a member of class 2 synaptotagmins, is located in presynaptic plasma membranes in neurons, dense-core vesicles in endocrine cells, and lysosomes in fibroblasts. It has been shown to play a role in regulation of Ca2+-dependent lysosomal exocytosis in fibroblasts and may also function as a vesicular Ca2+-sensor. It is distinguished from the other synaptotagmins by having over 12 splice forms. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic ves

>cd08406 C2B_Synaptotagmin-12 C2 domain second repeat present in Synaptotagmin 12

Probab=99.61  E-value=3.1e-15  Score=124.55  Aligned_cols=92  Identities=21%  Similarity=0.334  Sum_probs=77.8

Q ss_pred             ccEEEEEEEEeecCCCCCCCCCCCCCcEEEEEEcCC----ceEEEEeecCCCCCCccccEEEEeeeCC-CCCceEEEEEE
Q 021710           18 THDLEITIICAKHLKNVNWRNGGDLKPYVVFYVDPA----YRLATQSDDSGSTRPVWNERFTLPITHS-VRESVLTLEIF   92 (308)
Q Consensus        18 ~~~L~VtIisAk~L~~~~~~~~~~~dPYv~v~l~~~----~k~kT~v~k~gt~nP~WnE~f~f~l~~~-~~~~~L~l~V~   92 (308)
                      ...|+|+|++|+||...+..+  .+||||++.+.+.    .+.||+++++ +.||+|||+|.|.+... +.+..|.|+||
T Consensus        14 ~~~L~V~Vi~A~nL~~~~~~g--~~DpyVkv~l~~~~~~~~k~kT~v~k~-t~nP~~nE~f~F~v~~~~l~~~~l~~~V~   90 (136)
T cd08406          14 AERLTVVVVKARNLVWDNGKT--TADPFVKVYLLQDGRKISKKKTSVKRD-DTNPIFNEAMIFSVPAIVLQDLSLRVTVA   90 (136)
T ss_pred             CCEEEEEEEEeeCCCCccCCC--CCCeEEEEEEEeCCccccccCCccccC-CCCCeeceeEEEECCHHHhCCcEEEEEEE
Confidence            478999999999999887655  4999999999642    3678999988 89999999999998753 56788999999


Q ss_pred             eccCCCCCCceeeeEEEeCcc
Q 021710           93 HSKLSETPKPLVGSVKFPLAH  113 (308)
Q Consensus        93 d~~~~~~~d~lLG~~~ipL~~  113 (308)
                      |++ ...++++||++.|....
T Consensus        91 ~~d-~~~~~~~iG~v~lg~~~  110 (136)
T cd08406          91 EST-EDGKTPNVGHVIIGPAA  110 (136)
T ss_pred             eCC-CCCCCCeeEEEEECCCC
Confidence            998 46789999999997653

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 12, a member of class 6 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmins 8 and 13, do not have any consensus Ca2+ binding sites. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycl

>cd08402 C2B_Synaptotagmin-1 C2 domain second repeat present in Synaptotagmin 1

Probab=99.61  E-value=6.8e-15  Score=121.98  Aligned_cols=107  Identities=17%  Similarity=0.239  Sum_probs=84.1

Q ss_pred             cccEEEEEEEEeecCCCCCCCCCCCCCcEEEEEEcC----CceEEEEeecCCCCCCccccEEEEeeeCC-CCCceEEEEE
Q 021710           17 ITHDLEITIICAKHLKNVNWRNGGDLKPYVVFYVDP----AYRLATQSDDSGSTRPVWNERFTLPITHS-VRESVLTLEI   91 (308)
Q Consensus        17 ~~~~L~VtIisAk~L~~~~~~~~~~~dPYv~v~l~~----~~k~kT~v~k~gt~nP~WnE~f~f~l~~~-~~~~~L~l~V   91 (308)
                      ..+.|+|+|++|++|...+..+.  +||||+|.+..    ..+.+|+++++ +.||+|||+|.|.+... +....|.|+|
T Consensus        13 ~~~~l~V~Vi~a~~L~~~d~~g~--~dpyv~v~l~~~~~~~~~~kT~v~~~-t~nP~wne~f~f~i~~~~l~~~~l~~~v   89 (136)
T cd08402          13 TAGKLTVVILEAKNLKKMDVGGL--SDPYVKIHLMQNGKRLKKKKTTIKKR-TLNPYYNESFSFEVPFEQIQKVHLIVTV   89 (136)
T ss_pred             CCCeEEEEEEEeeCCCcccCCCC--CCCeEEEEEEECCcccceeeccceeC-CCCCcccceEEEECCHHHhCCCEEEEEE
Confidence            35789999999999998887654  99999999853    14678998888 99999999999998643 3345899999


Q ss_pred             EeccCCCCCCceeeeEEEeCcccccCCCCCCCceeEEEEEeCC
Q 021710           92 FHSKLSETPKPLVGSVKFPLAHLVDSDSSEPTQYVRKLEVLRP  134 (308)
Q Consensus        92 ~d~~~~~~~d~lLG~~~ipL~~L~~~~~~~~~~~~~~~~L~~~  134 (308)
                      ||++ ...++++||++.|++...-.       ....|+++++.
T Consensus        90 ~d~~-~~~~~~~iG~~~i~~~~~~~-------~~~~W~~~~~~  124 (136)
T cd08402          90 LDYD-RIGKNDPIGKVVLGCNATGA-------ELRHWSDMLAS  124 (136)
T ss_pred             EeCC-CCCCCceeEEEEECCccCCh-------HHHHHHHHHhC
Confidence            9998 46688999999999976321       22456666543

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 1, a member of the class 1 synaptotagmins, is located in the brain and endocranium and localized to the synaptic vesicles and secretory granules. It functions as a Ca2+ sensor for fast exocytosis. It, like synaptotagmin-2, has an N-glycosylated N-terminus. Synaptotagmin 4, a member of class 4 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmin-11, has an Asp to Ser substitution in its C2A domain. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are:

>cd08408 C2B_Synaptotagmin-14_16 C2 domain second repeat present in Synaptotagmins 14 and 16

Probab=99.61  E-value=1.2e-15  Score=127.41  Aligned_cols=109  Identities=17%  Similarity=0.262  Sum_probs=86.0

Q ss_pred             ccEEEEEEEEeecCCCCCCCCCCCCCcEEEEEEcCC-----ceEEEEeecCCCCCCccccEEEEeeeCC-CCCceEEEEE
Q 021710           18 THDLEITIICAKHLKNVNWRNGGDLKPYVVFYVDPA-----YRLATQSDDSGSTRPVWNERFTLPITHS-VRESVLTLEI   91 (308)
Q Consensus        18 ~~~L~VtIisAk~L~~~~~~~~~~~dPYv~v~l~~~-----~k~kT~v~k~gt~nP~WnE~f~f~l~~~-~~~~~L~l~V   91 (308)
                      .+.|.|+|++|+||...+..+  ..||||++.+.+.     .+.||++.++ +.||+|||+|.|.+... +.+..|.|+|
T Consensus        14 ~~~L~V~VikarnL~~~~~~~--~~dpyVkv~llp~~~~~~~~~kT~v~~~-t~nPvfnEtF~f~i~~~~l~~~~L~~~V   90 (138)
T cd08408          14 TGRLSVEVIKGSNFKNLAMNK--APDTYVKLTLLNSDGQEISKSKTSIRRG-QPDPEFKETFVFQVALFQLSEVTLMFSV   90 (138)
T ss_pred             CCeEEEEEEEecCCCccccCC--CCCeeEEEEEEeCCCcceeeccceeecC-CCCCcEeeeEEEECCHHHhCccEEEEEE
Confidence            488999999999999887665  4999999999642     2579999998 99999999999999753 4677999999


Q ss_pred             EeccCCCCCCceeeeEEEeCcccccCCCCCCCceeEEEEEeCCCC
Q 021710           92 FHSKLSETPKPLVGSVKFPLAHLVDSDSSEPTQYVRKLEVLRPSG  136 (308)
Q Consensus        92 ~d~~~~~~~d~lLG~~~ipL~~L~~~~~~~~~~~~~~~~L~~~sg  136 (308)
                      ||.+ ...++++||++.|.+...-.+      ....|+.+++..+
T Consensus        91 ~~~~-~~~~~~~iG~v~l~~~~~~~~------~~~hW~~~l~~~~  128 (138)
T cd08408          91 YNKR-KMKRKEMIGWFSLGLNSSGEE------EEEHWNEMKESKG  128 (138)
T ss_pred             EECC-CCCCCcEEEEEEECCcCCCch------HHHHHHHHHhCCC
Confidence            9998 367899999999988754321      1235666654333

Synaptotagmin 14 and 16 are membrane-trafficking proteins in specific tissues outside the brain. Both of these contain C-terminal tandem C2 repeats, but only Synaptotagmin 14 has an N-terminal transmembrane domain and a putative fatty-acylation site. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium and this is indeed the case here. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicle

>cd08686 C2_ABR C2 domain in the Active BCR (Breakpoint cluster region) Related protein

Probab=99.61  E-value=1.8e-14  Score=116.60  Aligned_cols=82  Identities=21%  Similarity=0.367  Sum_probs=68.5

Q ss_pred             EEEEEEEeecCCCCCCCCCCCCCcEEEEEEcC----CceEEEEeecCCCCCCccccEEEEeeeCCCCCceEEEEEEecc-
Q 021710           21 LEITIICAKHLKNVNWRNGGDLKPYVVFYVDP----AYRLATQSDDSGSTRPVWNERFTLPITHSVRESVLTLEIFHSK-   95 (308)
Q Consensus        21 L~VtIisAk~L~~~~~~~~~~~dPYv~v~l~~----~~k~kT~v~k~gt~nP~WnE~f~f~l~~~~~~~~L~l~V~d~~-   95 (308)
                      |+|+|++|+||+     +  .+||||++.+++    ..+.+|+++++ +.||+|||+|.|.+..   ...|.|.|||++ 
T Consensus         1 L~V~V~~A~~L~-----~--~sDPYV~l~v~~~~~~~~~~KTk~i~~-TlnPvWnE~F~i~l~~---s~~L~~~v~d~~~   69 (118)
T cd08686           1 LNVIVHSAQGFK-----Q--SANLYCTLEVDSFGYFVKKAKTRVCRD-TTEPNWNEEFEIELEG---SQTLRILCYEKCY   69 (118)
T ss_pred             CEEEEEeCCCCC-----C--CCCCEEEEEEcCccccceeeeeeeecC-CCCCccceEEEEEeCC---CCEEEEEEEEccc
Confidence            689999999996     2  389999999975    25799999998 9999999999999974   568999999983 


Q ss_pred             -----CCCCCCceeeeEEEeCcc
Q 021710           96 -----LSETPKPLVGSVKFPLAH  113 (308)
Q Consensus        96 -----~~~~~d~lLG~~~ipL~~  113 (308)
                           .....|++||++.|.|+-
T Consensus        70 ~~~~~d~~~~d~~~G~g~i~Ld~   92 (118)
T cd08686          70 SKVKLDGEGTDAIMGKGQIQLDP   92 (118)
T ss_pred             ccccccccCcccEEEEEEEEECH
Confidence                 134689999888887754

The ABR protein is similar to the breakpoint cluster region protein. It has homology to guanine nucleotide exchange proteins and GTPase-activating proteins (GAPs). ABR is expressed primarily in the brain, but also includes non-neuronal tissues such as the heart. It has been associated with human diseases such as Miller-Dieker syndrome in which mental retardation and malformations of the heart are present. ABR contains a RhoGEF domain and a PH-like domain upstream of its C2 domain and a RhoGAP domain downstream of this domain. A few members also contain a Bcr-Abl oncoprotein oligomerization domain at the very N-terminal end. Splice variants of ABR have been identified. ABR is found in a wide variety of organisms including chimpanzee, dog, mouse, rat, fruit fly, and mosquito. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arr

>cd00276 C2B_Synaptotagmin C2 domain second repeat present in Synaptotagmin

Probab=99.61  E-value=1.7e-15  Score=124.54  Aligned_cols=109  Identities=17%  Similarity=0.280  Sum_probs=88.3

Q ss_pred             ccEEEEEEEEeecCCCCCCCCCCCCCcEEEEEEcCC----ceEEEEeecCCCCCCccccEEEEeeeCC-CCCceEEEEEE
Q 021710           18 THDLEITIICAKHLKNVNWRNGGDLKPYVVFYVDPA----YRLATQSDDSGSTRPVWNERFTLPITHS-VRESVLTLEIF   92 (308)
Q Consensus        18 ~~~L~VtIisAk~L~~~~~~~~~~~dPYv~v~l~~~----~k~kT~v~k~gt~nP~WnE~f~f~l~~~-~~~~~L~l~V~   92 (308)
                      .+.|+|+|++|++|+..+..+.  +||||++.+.+.    .+.+|+++++ +.||.|||+|.|.+... +....|.|+||
T Consensus        13 ~~~L~V~v~~a~~L~~~~~~~~--~dpyv~v~l~~~~~~~~~~~T~~~~~-~~~P~wne~f~f~i~~~~l~~~~l~~~v~   89 (134)
T cd00276          13 AERLTVVVLKARNLPPSDGKGL--SDPYVKVSLLQGGKKLKKKKTSVKKG-TLNPVFNEAFSFDVPAEQLEEVSLVITVV   89 (134)
T ss_pred             CCEEEEEEEEeeCCCCccCCCC--CCcEEEEEEEcCCeEeeeecCcceec-CCCCeeeeeEEEECCHHHhCCcEEEEEEE
Confidence            4789999999999998876654  999999999653    3679999987 89999999999998763 23578999999


Q ss_pred             eccCCCCCCceeeeEEEeCcccccCCCCCCCceeEEEEEeCCCCC
Q 021710           93 HSKLSETPKPLVGSVKFPLAHLVDSDSSEPTQYVRKLEVLRPSGR  137 (308)
Q Consensus        93 d~~~~~~~d~lLG~~~ipL~~L~~~~~~~~~~~~~~~~L~~~sg~  137 (308)
                      |.+. ...+++||.+.|+|++  ...     ....|+.|++..++
T Consensus        90 d~~~-~~~~~~lG~~~i~l~~--~~~-----~~~~W~~l~~~~~~  126 (134)
T cd00276          90 DKDS-VGRNEVIGQVVLGPDS--GGE-----ELEHWNEMLASPRK  126 (134)
T ss_pred             ecCC-CCCCceeEEEEECCCC--CCc-----HHHHHHHHHhCCCC
Confidence            9983 4688999999999999  221     23589988765444

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. There are several classes of Synaptotagmins. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distin

>cd08403 C2B_Synaptotagmin-3-5-6-9-10 C2 domain second repeat present in Synaptotagmins 3, 5, 6, 9, and 10

Probab=99.61  E-value=1.7e-15  Score=125.20  Aligned_cols=110  Identities=18%  Similarity=0.205  Sum_probs=85.7

Q ss_pred             cccEEEEEEEEeecCCCCCCCCCCCCCcEEEEEEcC----CceEEEEeecCCCCCCccccEEEEeeeCC-CCCceEEEEE
Q 021710           17 ITHDLEITIICAKHLKNVNWRNGGDLKPYVVFYVDP----AYRLATQSDDSGSTRPVWNERFTLPITHS-VRESVLTLEI   91 (308)
Q Consensus        17 ~~~~L~VtIisAk~L~~~~~~~~~~~dPYv~v~l~~----~~k~kT~v~k~gt~nP~WnE~f~f~l~~~-~~~~~L~l~V   91 (308)
                      ..+.|+|+|++|++|...+..+.  +||||++.+..    ..+.+|+++++ +.||+|||+|.|.+... +.+..|.|+|
T Consensus        12 ~~~~L~V~v~~A~~L~~~d~~g~--~dpyvkv~l~~~~~~~~~~kT~v~~~-t~nP~wne~f~f~i~~~~~~~~~l~~~v   88 (134)
T cd08403          12 TAGRLTLTIIKARNLKAMDITGF--SDPYVKVSLMCEGRRLKKKKTSVKKN-TLNPTYNEALVFDVPPENVDNVSLIIAV   88 (134)
T ss_pred             CCCEEEEEEEEeeCCCccccCCC--CCceEEEEEEeCCcccceecCCcccC-CCCCcccceEEEECCHHHhCCCEEEEEE
Confidence            35889999999999999887765  99999999843    24678998877 89999999999998642 3445799999


Q ss_pred             EeccCCCCCCceeeeEEEeCcccccCCCCCCCceeEEEEEeCCCCC
Q 021710           92 FHSKLSETPKPLVGSVKFPLAHLVDSDSSEPTQYVRKLEVLRPSGR  137 (308)
Q Consensus        92 ~d~~~~~~~d~lLG~~~ipL~~L~~~~~~~~~~~~~~~~L~~~sg~  137 (308)
                      ||++ ..+++++||++.|++....  .     ....|+.+++..++
T Consensus        89 ~d~~-~~~~~~~IG~~~l~~~~~~--~-----~~~~w~~~~~~~~~  126 (134)
T cd08403          89 VDYD-RVGHNELIGVCRVGPNADG--Q-----GREHWNEMLANPRK  126 (134)
T ss_pred             EECC-CCCCCceeEEEEECCCCCC--c-----hHHHHHHHHHCCCC
Confidence            9998 4678999999999876321  1     12467777655444

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 3, a member of class 3 synaptotagmins, is located in the brain and localized to the active zone and plasma membrane. It functions as a Ca2+ sensor for fast exocytosis. It, along with synaptotagmins 5,6, and 10, has disulfide bonds at its N-terminus. Synaptotagmin 9, a class 5 synaptotagmins, is located in the brain and localized to the synaptic vesicles. It is thought to be a Ca2+-sensor for dense-core vesicle exocytosis. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind

>cd08409 C2B_Synaptotagmin-15 C2 domain second repeat present in Synaptotagmin 15

Probab=99.60  E-value=1.8e-15  Score=126.07  Aligned_cols=93  Identities=19%  Similarity=0.288  Sum_probs=78.2

Q ss_pred             ccEEEEEEEEeecCCCCCCCCCCCCCcEEEEEEcCC----ceEEEEeecCCCCCCccccEEEEeeeCC-CCCceEEEEEE
Q 021710           18 THDLEITIICAKHLKNVNWRNGGDLKPYVVFYVDPA----YRLATQSDDSGSTRPVWNERFTLPITHS-VRESVLTLEIF   92 (308)
Q Consensus        18 ~~~L~VtIisAk~L~~~~~~~~~~~dPYv~v~l~~~----~k~kT~v~k~gt~nP~WnE~f~f~l~~~-~~~~~L~l~V~   92 (308)
                      ...|+|+|++|+||...+ .+  .+||||++.+.+.    .+.+|+++++ +.||+|||+|.|.+... +.+..|.|+||
T Consensus        14 ~~~L~V~V~~a~nL~~~~-~~--~~d~yVkv~l~~~~~~~~~~kT~v~~~-~~nP~fnE~F~f~i~~~~l~~~~L~~~V~   89 (137)
T cd08409          14 LNRLTVVVLRARGLRQLD-HA--HTSVYVKVSLMIHNKVVKTKKTEVVDG-AASPSFNESFSFKVTSRQLDTASLSLSVM   89 (137)
T ss_pred             CCeEEEEEEEecCCCccc-CC--CCCeEEEEEEEECCEEeeeeecccEeC-CCCCcccceEEEECCHHHhCccEEEEEEE
Confidence            478999999999999887 55  4999999998652    3678999887 99999999999999753 45678999999


Q ss_pred             eccCCCCCCceeeeEEEeCcccc
Q 021710           93 HSKLSETPKPLVGSVKFPLAHLV  115 (308)
Q Consensus        93 d~~~~~~~d~lLG~~~ipL~~L~  115 (308)
                      |.+. ..++++||++.|......
T Consensus        90 ~~~~-~~~~~~lG~v~ig~~~~~  111 (137)
T cd08409          90 QSGG-VRKSKLLGRVVLGPFMYA  111 (137)
T ss_pred             eCCC-CCCcceEEEEEECCcccC
Confidence            9984 668999999999865544

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. It is thought to be involved in the trafficking and exocytosis of secretory vesicles in non-neuronal tissues and is Ca2+ independent. Human synaptotagmin 15 has 2 alternatively spliced forms that encode proteins with different C-termini. The larger, SYT15a, contains a N-terminal TM region, a putative fatty-acylation site, and 2 tandem C terminal C2 domains. The smaller, SYT15b, lacks the C-terminal portion of the second C2 domain. Unlike most other synaptotagmins it is nearly absent in the brain and rather is found in the heart, lungs, skeletal muscle, and testis. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 id

>cd04048 C2A_Copine C2 domain first repeat in Copine

Probab=99.60  E-value=1.1e-14  Score=118.25  Aligned_cols=99  Identities=18%  Similarity=0.246  Sum_probs=81.7

Q ss_pred             EEEeecCCCCCCCCCCCCCcEEEEEEcCCc------eEEEEeecCCCCCCccccEEEEeeeCCCCCceEEEEEEeccCC-
Q 021710           25 IICAKHLKNVNWRNGGDLKPYVVFYVDPAY------RLATQSDDSGSTRPVWNERFTLPITHSVRESVLTLEIFHSKLS-   97 (308)
Q Consensus        25 IisAk~L~~~~~~~~~~~dPYv~v~l~~~~------k~kT~v~k~gt~nP~WnE~f~f~l~~~~~~~~L~l~V~d~~~~-   97 (308)
                      .++|++|...++.+.  +||||++.+....      +.+|+++++ +.||+|||+|.|.+... ....|.|+|||++.. 
T Consensus         6 ~i~a~~L~~~d~~g~--~DPyv~v~~~~~~~~~~~~~~kT~vi~~-t~nP~wne~f~f~~~~~-~~~~l~~~V~d~d~~~   81 (120)
T cd04048           6 SISCRNLLDKDVLSK--SDPFVVVYVKTGGSGQWVEIGRTEVIKN-NLNPDFVTTFTVDYYFE-EVQKLRFEVYDVDSKS   81 (120)
T ss_pred             EEEccCCCCCCCCCC--CCcEEEEEEEcCCCCceEEeccEeEeCC-CCCCCceEEEEEEEEeE-eeeEEEEEEEEecCCc
Confidence            589999999988765  9999999997643      589999998 99999999999986532 356799999999841 


Q ss_pred             --CCCCceeeeEEEeCcccccCCCCCCCceeEEEEEe
Q 021710           98 --ETPKPLVGSVKFPLAHLVDSDSSEPTQYVRKLEVL  132 (308)
Q Consensus        98 --~~~d~lLG~~~ipL~~L~~~~~~~~~~~~~~~~L~  132 (308)
                        ...+++||++.++|++|+....     ...|+.|.
T Consensus        82 ~~~~~~d~iG~~~i~l~~l~~~~~-----~~~~~~l~  113 (120)
T cd04048          82 KDLSDHDFLGEAECTLGEIVSSPG-----QKLTLPLK  113 (120)
T ss_pred             CCCCCCcEEEEEEEEHHHHhcCCC-----cEEEEEcc
Confidence              5689999999999999986542     35788883

There are 2 copies of the C2 domain present in copine, a protein involved in membrane trafficking, protein-protein interactions, and perhaps even cell division and growth. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 doma

>cd08410 C2B_Synaptotagmin-17 C2 domain second repeat present in Synaptotagmin 17

Probab=99.60  E-value=1.7e-15  Score=125.80  Aligned_cols=110  Identities=16%  Similarity=0.268  Sum_probs=84.5

Q ss_pred             ccEEEEEEEEeecCCCCCCCCCCCCCcEEEEEEcC----CceEEEEeecCCCCCCccccEEEEeeeCC-CCCceEEEEEE
Q 021710           18 THDLEITIICAKHLKNVNWRNGGDLKPYVVFYVDP----AYRLATQSDDSGSTRPVWNERFTLPITHS-VRESVLTLEIF   92 (308)
Q Consensus        18 ~~~L~VtIisAk~L~~~~~~~~~~~dPYv~v~l~~----~~k~kT~v~k~gt~nP~WnE~f~f~l~~~-~~~~~L~l~V~   92 (308)
                      .+.|+|+|++|++|+..+..+.  +||||++.+..    ..+.+|+++++ +.||+|||+|.|.+... +.+..|.|+||
T Consensus        13 ~~~L~V~vi~a~~L~~~d~~g~--~DPyV~v~l~~~~~~~~~~kT~v~~~-t~nP~wnE~F~f~i~~~~l~~~~l~~~V~   89 (135)
T cd08410          13 AGRLNVDIIRAKQLLQTDMSQG--SDPFVKIQLVHGLKLIKTKKTSCMRG-TIDPFYNESFSFKVPQEELENVSLVFTVY   89 (135)
T ss_pred             CCeEEEEEEEecCCCcccCCCC--CCeEEEEEEEcCCcccceEcCccccC-CCCCccceeEEEeCCHHHhCCCEEEEEEE
Confidence            4789999999999999887764  99999999843    24678999988 99999999999998642 34557999999


Q ss_pred             eccCCCCCCceeeeEEEeCcccccCCCCCCCceeEEEEEeCCCCC
Q 021710           93 HSKLSETPKPLVGSVKFPLAHLVDSDSSEPTQYVRKLEVLRPSGR  137 (308)
Q Consensus        93 d~~~~~~~d~lLG~~~ipL~~L~~~~~~~~~~~~~~~~L~~~sg~  137 (308)
                      |++ ...++++||++.|....+-.  .    ....|+.|+...++
T Consensus        90 d~d-~~~~~~~iG~~~l~~~~~~~--~----~~~~W~~l~~~~~~  127 (135)
T cd08410          90 GHN-VKSSNDFIGRIVIGQYSSGP--S----ETNHWRRMLNSQRT  127 (135)
T ss_pred             eCC-CCCCCcEEEEEEEcCccCCc--h----HHHHHHHHHhCCCC
Confidence            998 46789999998865433221  1    12467777665444

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 17 is located in the brain, kidney, and prostate and is thought to be a peripheral membrane protein. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-

>cd08692 C2B_Tac2-N C2 domain second repeat found in Tac2-N (Tandem C2 protein in Nucleus)

Probab=99.59  E-value=8.8e-15  Score=121.27  Aligned_cols=93  Identities=18%  Similarity=0.261  Sum_probs=77.0

Q ss_pred             ccEEEEEEEEeecCCCCCCCCCCCCCcEEEEEEcC----CceEEEEeecCCC-CCCccccEEEEeeeCCCCCceEEEEEE
Q 021710           18 THDLEITIICAKHLKNVNWRNGGDLKPYVVFYVDP----AYRLATQSDDSGS-TRPVWNERFTLPITHSVRESVLTLEIF   92 (308)
Q Consensus        18 ~~~L~VtIisAk~L~~~~~~~~~~~dPYv~v~l~~----~~k~kT~v~k~gt-~nP~WnE~f~f~l~~~~~~~~L~l~V~   92 (308)
                      .+.|+|+|++|+||+.....+  ..||||+|++..    ..++||++.++ + .+|+|||+|.|++...+.+..|.|+||
T Consensus        13 ~~rLtV~VikarnL~~~~~~~--~~dpYVKV~L~~~~k~~~KkKT~v~k~-t~~~P~fNEsF~Fdv~~~~~~v~l~v~v~   89 (135)
T cd08692          13 NSRIQLQILEAQNLPSSSTPL--TLSFFVKVGMFSTGGLLYKKKTRLVKS-SNGQVKWGETMIFPVTQQEHGIQFLIKLY   89 (135)
T ss_pred             CCeEEEEEEEccCCCcccCCC--CCCcEEEEEEEECCCcceeecCccEEC-CCCCceecceEEEeCCchhheeEEEEEEE
Confidence            578999999999999764333  479999999853    25889999998 6 469999999999987655678999999


Q ss_pred             eccCCCCCCceeeeEEEeCccc
Q 021710           93 HSKLSETPKPLVGSVKFPLAHL  114 (308)
Q Consensus        93 d~~~~~~~d~lLG~~~ipL~~L  114 (308)
                      |++ +..++++||++.|.++..
T Consensus        90 d~~-~~~~n~~IG~v~lG~~~~  110 (135)
T cd08692          90 SRS-SVRRKHFLGQVWISSDSS  110 (135)
T ss_pred             eCC-CCcCCceEEEEEECCccC
Confidence            988 467899999999998764

Tac2-N contains two C2 domains and a short C-terminus including a WHXL motif, which are key in stabilizing transport vesicles to the plasma membrane by binding to a plasma membrane. However unlike the usual carboxyl-terminal-type (C-type) tandem C2 proteins, it lacks a transmembrane domain, a Slp-homology domain, and a Munc13-1-interacting domain. Homology search analysis indicate that no known protein motifs are located in its N-terminus, making Tac2-N a novel class of Ca2+-independent, C-type tandem C2 proteins. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polypho

>PLN03200 cellulose synthase-interactive protein; Provisional

Probab=99.58  E-value=6.6e-15  Score=162.54  Aligned_cols=121  Identities=17%  Similarity=0.259  Sum_probs=101.8

Q ss_pred             ccEEEEEEEEeecCCCCCCCCCCCCCcEEEEEEcCCceEEEEeecCCCCCCccccEEEEeeeCCCCCceEEEEEEeccCC
Q 021710           18 THDLEITIICAKHLKNVNWRNGGDLKPYVVFYVDPAYRLATQSDDSGSTRPVWNERFTLPITHSVRESVLTLEIFHSKLS   97 (308)
Q Consensus        18 ~~~L~VtIisAk~L~~~~~~~~~~~dPYv~v~l~~~~k~kT~v~k~gt~nP~WnE~f~f~l~~~~~~~~L~l~V~d~~~~   97 (308)
                      .+.|.|+|++|+||.  ..++  .+||||++.+++..+.||+++++ +.||+|||.|+|.+..+..+..|+|+|||+|. 
T Consensus      1979 ~G~L~V~V~~a~nl~--~~~~--~sdPyv~l~~g~~~~~kTkvvk~-~~nP~Wne~f~~~~~~p~~~~~l~iev~d~d~- 2052 (2102)
T PLN03200       1979 PGSLTVTIKRGNNLK--QSMG--NTNAFCKLTLGNGPPRQTKVVSH-SSSPEWKEGFTWAFDSPPKGQKLHISCKSKNT- 2052 (2102)
T ss_pred             CcceEEEEeeccccc--cccC--CCCCeEEEEECCCCcccccccCC-CCCCCcccceeeeecCCCCCCceEEEEEecCc-
Confidence            589999999999998  3344  49999999999766889999999 89999999999998876456789999999993 


Q ss_pred             CCCCceeeeEEEeCcccccCCCCCCCceeEEEEEeCCCCCCccE---EEEEEEEccC
Q 021710           98 ETPKPLVGSVKFPLAHLVDSDSSEPTQYVRKLEVLRPSGRPQGK---IRVKLVLNGR  151 (308)
Q Consensus        98 ~~~d~lLG~~~ipL~~L~~~~~~~~~~~~~~~~L~~~sg~~~G~---L~v~v~~~~~  151 (308)
                      . .++.+|.+.|+|.++..+.     ....||+|.+ +++..|+   |.|++.|.++
T Consensus      2053 f-~kd~~G~~~i~l~~vv~~~-----~~~~~~~L~~-~~~k~G~~~~~~~e~~w~~~ 2102 (2102)
T PLN03200       2053 F-GKSSLGKVTIQIDRVVMEG-----TYSGEYSLNP-ESNKDGSSRTLEIEFQWSNR 2102 (2102)
T ss_pred             c-CCCCCceEEEEHHHHhcCc-----eeeeeeecCc-ccccCCCcceEEEEEEecCC
Confidence            3 5669999999999999755     3468999974 4556787   9999999753

>cd04035 C2A_Rabphilin_Doc2 C2 domain first repeat present in Rabphilin and Double C2 domain

Probab=99.58  E-value=3.1e-14  Score=115.81  Aligned_cols=96  Identities=28%  Similarity=0.404  Sum_probs=79.9

Q ss_pred             ccEEEEEEEEeecCCCCCCCCCCCCCcEEEEEEcC----CceEEEEeecCCCCCCccccEEEEe-eeC-CCCCceEEEEE
Q 021710           18 THDLEITIICAKHLKNVNWRNGGDLKPYVVFYVDP----AYRLATQSDDSGSTRPVWNERFTLP-ITH-SVRESVLTLEI   91 (308)
Q Consensus        18 ~~~L~VtIisAk~L~~~~~~~~~~~dPYv~v~l~~----~~k~kT~v~k~gt~nP~WnE~f~f~-l~~-~~~~~~L~l~V   91 (308)
                      ...|+|+|++|++|...+..+  .+||||++.+.+    ..+.+|+++++ +.||+|||+|.|. +.. .+.+..|.|+|
T Consensus        14 ~~~L~V~v~~a~~L~~~~~~~--~~dpyv~v~~~~~~~~~~~~rT~v~~~-~~~P~Wne~f~f~~~~~~~~~~~~l~~~v   90 (123)
T cd04035          14 NSALHCTIIRAKGLKAMDANG--LSDPYVKLNLLPGASKATKLRTKTVHK-TRNPEFNETLTYYGITEEDIQRKTLRLLV   90 (123)
T ss_pred             CCEEEEEEEEeeCCCCCCCCC--CCCceEEEEEecCCCCCCceeeeeecC-CCCCCccceEEEcCCCHHHhCCCEEEEEE
Confidence            478999999999999888765  499999999853    24789999998 8999999999996 332 23456899999


Q ss_pred             EeccCCCCCCceeeeEEEeCcccccCC
Q 021710           92 FHSKLSETPKPLVGSVKFPLAHLVDSD  118 (308)
Q Consensus        92 ~d~~~~~~~d~lLG~~~ipL~~L~~~~  118 (308)
                      ||++. . .+++||++.|+|++|....
T Consensus        91 ~d~~~-~-~~~~iG~~~i~l~~l~~~~  115 (123)
T cd04035          91 LDEDR-F-GNDFLGETRIPLKKLKPNQ  115 (123)
T ss_pred             EEcCC-c-CCeeEEEEEEEcccCCCCc
Confidence            99984 4 7899999999999998643

Rabphilin is found neurons and in neuroendrocrine cells, while Doc2 is found not only in the brain but in tissues, including mast cells, chromaffin cells, and osteoblasts. Rabphilin and Doc2s share highly homologous tandem C2 domains, although their N-terminal structures are completely different: rabphilin contains an N-terminal Rab-binding domain (RBD),7 whereas Doc2 contains an N-terminal Munc13-1-interacting domain (MID). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain

>KOG1028 consensus Ca2+-dependent phospholipid-binding protein Synaptotagmin, required for synaptic vesicle and secretory granule exocytosis [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]

Probab=99.55  E-value=5e-14  Score=137.59  Aligned_cols=126  Identities=21%  Similarity=0.341  Sum_probs=104.5

Q ss_pred             cccEEEEEEEEeecCCCCCCCCCCCCCcEEEEEEcCC--ceEEEEeecCCCCCCccccEEEEeeeCC-CCCceEEEEEEe
Q 021710           17 ITHDLEITIICAKHLKNVNWRNGGDLKPYVVFYVDPA--YRLATQSDDSGSTRPVWNERFTLPITHS-VRESVLTLEIFH   93 (308)
Q Consensus        17 ~~~~L~VtIisAk~L~~~~~~~~~~~dPYv~v~l~~~--~k~kT~v~k~gt~nP~WnE~f~f~l~~~-~~~~~L~l~V~d   93 (308)
                      +...|+|+|++|++|...+ .++ .+||||++++.++  .+.+|++.++ ++||+|||+|.|.|... +...+|.|.|||
T Consensus       165 ~~~~L~V~V~qa~~Lp~~d-~~g-~sdpyVK~~llPdk~~k~kT~v~r~-tlnP~fnEtf~f~v~~~~l~~~~L~l~V~~  241 (421)
T KOG1028|consen  165 ELNLLTVRVIQAHDLPAKD-RGG-TSDPYVKVYLLPDKKGKFKTRVHRK-TLNPVFNETFRFEVPYEELSNRVLHLSVYD  241 (421)
T ss_pred             cCCEEEEEEEEecCCCccc-CCC-CCCCeeEEEEcCCCCCcceeeeeec-CcCCccccceEeecCHHHhccCEEEEEEEe
Confidence            4578999999999999988 443 6999999999773  5899999998 99999999999997643 678899999999


Q ss_pred             ccCCCCCCceeeeEEEeCcccccCCCCCCCceeEEEEEeCCC---CCCccEEEEEEEEccC
Q 021710           94 SKLSETPKPLVGSVKFPLAHLVDSDSSEPTQYVRKLEVLRPS---GRPQGKIRVKLVLNGR  151 (308)
Q Consensus        94 ~~~~~~~d~lLG~~~ipL~~L~~~~~~~~~~~~~~~~L~~~s---g~~~G~L~v~v~~~~~  151 (308)
                      .| +..++++||++.++|..+.....     ...|..|....   ....|+|.++++|.+.
T Consensus       242 ~d-rfsr~~~iGev~~~l~~~~~~~~-----~~~w~~l~~~~~~~~~~~gel~~sL~Y~p~  296 (421)
T KOG1028|consen  242 FD-RFSRHDFIGEVILPLGEVDLLST-----TLFWKDLQPSSTDSEELAGELLLSLCYLPT  296 (421)
T ss_pred             cC-CcccccEEEEEEecCcccccccc-----ceeeeccccccCCcccccceEEEEEEeecC
Confidence            99 57899999999999998876543     25799997642   2224899999999874

>cd04047 C2B_Copine C2 domain second repeat in Copine

Probab=99.51  E-value=1.7e-13  Score=109.29  Aligned_cols=89  Identities=18%  Similarity=0.361  Sum_probs=73.7

Q ss_pred             EEEEEeecCCCCCCCCCCCCCcEEEEEEcCC-----ceEEEEeecCCCCCCccccEEEEeeeCC---CCCceEEEEEEec
Q 021710           23 ITIICAKHLKNVNWRNGGDLKPYVVFYVDPA-----YRLATQSDDSGSTRPVWNERFTLPITHS---VRESVLTLEIFHS   94 (308)
Q Consensus        23 VtIisAk~L~~~~~~~~~~~dPYv~v~l~~~-----~k~kT~v~k~gt~nP~WnE~f~f~l~~~---~~~~~L~l~V~d~   94 (308)
                      +-+++|++|+..+..+.  +||||++++...     .+++|+++++ +.||+|| +|.|.+..-   .....|.|+|||+
T Consensus         4 ~~~i~a~~L~~~d~~~~--~DPyv~v~~~~~~~~~~~~~kT~vi~~-t~nP~Wn-~f~~~~~~l~~~~~~~~l~~~V~d~   79 (110)
T cd04047           4 ELQFSGKKLDKKDFFGK--SDPFLEISRQSEDGTWVLVYRTEVIKN-TLNPVWK-PFTIPLQKLCNGDYDRPIKIEVYDY   79 (110)
T ss_pred             EEEEEeCCCCCCCCCCC--CCeeEEEEEECCCCCEEEEEeeeEecc-CCCCceE-EEEEEHHHhcCCCcCCEEEEEEEEe
Confidence            44679999999998775  999999998653     3689999998 8999999 788875431   1257899999999


Q ss_pred             cCCCCCCceeeeEEEeCccccc
Q 021710           95 KLSETPKPLVGSVKFPLAHLVD  116 (308)
Q Consensus        95 ~~~~~~d~lLG~~~ipL~~L~~  116 (308)
                      + ..++|++||++.++|++|..
T Consensus        80 d-~~~~d~~iG~~~~~l~~l~~  100 (110)
T cd04047          80 D-SSGKHDLIGEFETTLDELLK  100 (110)
T ss_pred             C-CCCCCcEEEEEEEEHHHHhc
Confidence            8 46789999999999999984

There are 2 copies of the C2 domain present in copine, a protein involved in membrane trafficking, protein-protein interactions, and perhaps even cell division and growth. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 dom

>PF00168 C2: C2 domain; InterPro: IPR000008 The C2 domain is a Ca2+-dependent membrane-targeting module found in many cellular proteins involved in signal transduction or membrane trafficking

Probab=99.48  E-value=1.5e-13  Score=102.79  Aligned_cols=83  Identities=28%  Similarity=0.513  Sum_probs=69.8

Q ss_pred             EEEEEEEeecCCCCCCCCCCCCCcEEEEEEcCCc--eEEEEeecCCCCCCccccEEEEeeeCCCCCceEEEEEEeccCCC
Q 021710           21 LEITIICAKHLKNVNWRNGGDLKPYVVFYVDPAY--RLATQSDDSGSTRPVWNERFTLPITHSVRESVLTLEIFHSKLSE   98 (308)
Q Consensus        21 L~VtIisAk~L~~~~~~~~~~~dPYv~v~l~~~~--k~kT~v~k~gt~nP~WnE~f~f~l~~~~~~~~L~l~V~d~~~~~   98 (308)
                      |+|+|++|++|...+..+  ..+|||++.+....  +.+|+++++ +.+|.|||+|.|.+... ....|.|+|||++. .
T Consensus         1 L~v~I~~a~~L~~~~~~~--~~~~yv~v~~~~~~~~~~~T~~~~~-~~~P~w~e~~~~~~~~~-~~~~l~~~V~~~~~-~   75 (85)
T PF00168_consen    1 LTVTIHSARNLPSKDSNG--KPDPYVRVSVNGSESTKYKTKVKKN-TSNPVWNEEFEFPLDDP-DLDSLSFEVWDKDS-F   75 (85)
T ss_dssp             EEEEEEEEESSSSSSTTS--SBEEEEEEEEETTTCEEEEECCBSS-BSSEEEEEEEEEEESHG-CGTEEEEEEEEETS-S
T ss_pred             CEEEEEEEECCCCcccCC--cccccceeecceeeeeeeeeeeeec-cccceeeeeeeeeeecc-cccceEEEEEECCC-C
Confidence            789999999999877555  49999999998754  499999998 89999999999997654 34459999999983 5


Q ss_pred             CCCceeeeEE
Q 021710           99 TPKPLVGSVK  108 (308)
Q Consensus        99 ~~d~lLG~~~  108 (308)
                      ..+++||++.
T Consensus        76 ~~~~~iG~~~   85 (85)
T PF00168_consen   76 GKDELIGEVK   85 (85)
T ss_dssp             SSEEEEEEEE
T ss_pred             CCCCEEEEEC
Confidence            5699999874

C2 domains are unique among membrane targeting domains in that they show wide range of lipid selectivity for the major components of cell membranes, including phosphatidylserine and phosphatidylcholine. This C2 domain is about 116 amino-acid residues and is located between the two copies of the C1 domain in Protein Kinase C (that bind phorbol esters and diacylglycerol) (see PDOC00379 from PROSITEDOC) and the protein kinase catalytic domain (see PDOC00100 from PROSITEDOC). Regions with significant homology [] to the C2-domain have been found in many proteins. The C2 domain is thought to be involved in calcium-dependent phospholipid binding [] and in membrane targetting processes such as subcellular localisation. The 3D structure of the C2 domain of synaptotagmin has been reported [], the domain forms an eight-stranded beta sandwich constructed around a conserved 4-stranded motif, designated a C2 key []. Calcium binds in a cup-shaped depression formed by the N- and C-terminal loops of the C2-key motif. Structural analyses of several C2 domains have shown them to consist of similar ternary structures in which three Ca2+-binding loops are located at the end of an 8 stranded antiparallel beta sandwich. ; GO: 0005515 protein binding; PDB: 1RSY_A 1BYN_A 3NSJ_A 3QR1_D 3HN8_C 1DQV_A 3M7F_B 3KWU_A 3KWT_A 1V27_A ....

>PLN02270 phospholipase D alpha

Probab=99.45  E-value=9.1e-13  Score=134.99  Aligned_cols=126  Identities=21%  Similarity=0.310  Sum_probs=104.4

Q ss_pred             cccEEEEEEEEeecCCCCCC----------------CCCCCCCcEEEEEEcCCceEEEEeecCCCCCCccccEEEEeeeC
Q 021710           17 ITHDLEITIICAKHLKNVNW----------------RNGGDLKPYVVFYVDPAYRLATQSDDSGSTRPVWNERFTLPITH   80 (308)
Q Consensus        17 ~~~~L~VtIisAk~L~~~~~----------------~~~~~~dPYv~v~l~~~~k~kT~v~k~gt~nP~WnE~f~f~l~~   80 (308)
                      ..++|+|+|++|++|++.+.                .+++.+||||+|.+...++.||+++.+...||+|||+|.+.+..
T Consensus         6 lhg~l~~~i~ea~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~tv~~~~a~v~rtr~~~~~~~~p~w~e~f~i~~ah   85 (808)
T PLN02270          6 LHGTLHATIYEVDKLHSGGGPGFLGKLVANVEETVGVGKGESQLYATIDLEKARVGRTRKIENEPKNPRWYESFHIYCAH   85 (808)
T ss_pred             eecceEEEEEEcccCCCcchhhHHHHHHhccchhccCCCCCCCceEEEEeCCcEEEEEeecCCCCCCCccccceEEeecc
Confidence            46899999999999986310                11125799999999998999999998745699999999999987


Q ss_pred             CCCCceEEEEEEeccCCCCCCceeeeEEEeCcccccCCCCCCCceeEEEEEeCCCCCC-c--cEEEEEEEEccC
Q 021710           81 SVRESVLTLEIFHSKLSETPKPLVGSVKFPLAHLVDSDSSEPTQYVRKLEVLRPSGRP-Q--GKIRVKLVLNGR  151 (308)
Q Consensus        81 ~~~~~~L~l~V~d~~~~~~~d~lLG~~~ipL~~L~~~~~~~~~~~~~~~~L~~~sg~~-~--G~L~v~v~~~~~  151 (308)
                      .  ...|.|.|.|.+  .....+||.+.||+.+|+.+...     .+||+|.+.++++ +  -+|+|+++|.+.
T Consensus        86 ~--~~~v~f~vkd~~--~~g~~~ig~~~~p~~~~~~g~~i-----~~~~~~~~~~~~p~~~~~~~~~~~~f~~~  150 (808)
T PLN02270         86 M--ASNIIFTVKDDN--PIGATLIGRAYIPVEEILDGEEV-----DRWVEILDNDKNPIHGGSKIHVKLQYFEV  150 (808)
T ss_pred             C--cceEEEEEecCC--ccCceEEEEEEEEHHHhcCCCcc-----ccEEeccCCCCCcCCCCCEEEEEEEEEEc
Confidence            4  578999999988  34677999999999999986544     5899999998886 2  389999999875

>KOG1011 consensus Neurotransmitter release regulator, UNC-13 [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]

Probab=99.43  E-value=1.8e-13  Score=134.77  Aligned_cols=119  Identities=18%  Similarity=0.356  Sum_probs=97.2

Q ss_pred             ccEEEEEEEEeecCCCCCCCCCCCCCcEEEEEEcCCceEEEEeecCCCCCCccccEEEEeeeCCCCCceEEEEEEeccCC
Q 021710           18 THDLEITIICAKHLKNVNWRNGGDLKPYVVFYVDPAYRLATQSDDSGSTRPVWNERFTLPITHSVRESVLTLEIFHSKLS   97 (308)
Q Consensus        18 ~~~L~VtIisAk~L~~~~~~~~~~~dPYv~v~l~~~~k~kT~v~k~gt~nP~WnE~f~f~l~~~~~~~~L~l~V~d~~~~   97 (308)
                      ...+++||++|.+|..++..++  +||||++.++. .+.+|+++.. .+||+|||+|+|.++++  ...|+++|||++..
T Consensus       294 sakitltvlcaqgl~akdktg~--sdpyvt~qv~k-tkrrtrti~~-~lnpvw~ekfhfechns--tdrikvrvwded~d  367 (1283)
T KOG1011|consen  294 SAKITLTVLCAQGLIAKDKTGK--SDPYVTAQVGK-TKRRTRTIHQ-ELNPVWNEKFHFECHNS--TDRIKVRVWDEDND  367 (1283)
T ss_pred             ceeeEEeeeecccceecccCCC--CCCcEEEeecc-cchhhHhhhh-ccchhhhhheeeeecCC--CceeEEEEecCccc
Confidence            3578999999999999998875  99999999996 7899999987 89999999999999984  67899999998732


Q ss_pred             C----------CCCceeeeEEEeCcccccCCCCCCCceeEEEEEeCCCCC--CccEEEEEEEEc
Q 021710           98 E----------TPKPLVGSVKFPLAHLVDSDSSEPTQYVRKLEVLRPSGR--PQGKIRVKLVLN  149 (308)
Q Consensus        98 ~----------~~d~lLG~~~ipL~~L~~~~~~~~~~~~~~~~L~~~sg~--~~G~L~v~v~~~  149 (308)
                      .          ..|+|||+..|.+..|..       ..+.||.|.....+  ..|-|++.|.+.
T Consensus       368 lksklrqkl~resddflgqtvievrtlsg-------emdvwynlekrtdksavsgairlhisve  424 (1283)
T KOG1011|consen  368 LKSKLRQKLTRESDDFLGQTVIEVRTLSG-------EMDVWYNLEKRTDKSAVSGAIRLHISVE  424 (1283)
T ss_pred             HHHHHHHHhhhcccccccceeEEEEeccc-------chhhhcchhhccchhhccceEEEEEEEE
Confidence            1          478899999999888754       33689999765444  467666555543

>KOG2059 consensus Ras GTPase-activating protein [Signal transduction mechanisms]

Probab=99.37  E-value=1.5e-12  Score=129.66  Aligned_cols=121  Identities=19%  Similarity=0.233  Sum_probs=107.4

Q ss_pred             cEEEEEEEEeecCCCCCCCCCCCCCcEEEEEEcCCceEEEEeecCCCCCCccccEEEEeeeCCCCCceEEEEEEeccCCC
Q 021710           19 HDLEITIICAKHLKNVNWRNGGDLKPYVVFYVDPAYRLATQSDDSGSTRPVWNERFTLPITHSVRESVLTLEIFHSKLSE   98 (308)
Q Consensus        19 ~~L~VtIisAk~L~~~~~~~~~~~dPYv~v~l~~~~k~kT~v~k~gt~nP~WnE~f~f~l~~~~~~~~L~l~V~d~~~~~   98 (308)
                      ..|.|+|.+||||...+..+  ..||||+|.+|....+||.++.+ ++.|.|.|+|.|.|+..  ...|.|-|||+|  .
T Consensus         5 ~sl~vki~E~knL~~~~~~g--~~D~yC~v~lD~E~v~RT~tv~k-sL~PF~gEe~~~~iP~~--F~~l~fYv~D~d--~   77 (800)
T KOG2059|consen    5 QSLKVKIGEAKNLPSYGPSG--MRDCYCTVNLDQEEVCRTATVEK-SLCPFFGEEFYFEIPRT--FRYLSFYVWDRD--L   77 (800)
T ss_pred             cceeEEEeecccCCCCCCCC--CcCcceEEeecchhhhhhhhhhh-hcCCccccceEEecCcc--eeeEEEEEeccc--c
Confidence            56899999999999998776  49999999999989999999999 99999999999999984  567999999999  5


Q ss_pred             CCCceeeeEEEeCcccccCCCCCCCceeEEEEEeC--CCCCCccEEEEEEEEccC
Q 021710           99 TPKPLVGSVKFPLAHLVDSDSSEPTQYVRKLEVLR--PSGRPQGKIRVKLVLNGR  151 (308)
Q Consensus        99 ~~d~lLG~~~ipL~~L~~~~~~~~~~~~~~~~L~~--~sg~~~G~L~v~v~~~~~  151 (308)
                      .+|+.||.+.|.-++|....+.     ..||.|..  ++.+++|+|++++.+.+.
T Consensus        78 ~~D~~IGKvai~re~l~~~~~~-----d~W~~L~~VD~dsEVQG~v~l~l~~~e~  127 (800)
T KOG2059|consen   78 KRDDIIGKVAIKREDLHMYPGK-----DTWFSLQPVDPDSEVQGKVHLELALTEA  127 (800)
T ss_pred             ccccccceeeeeHHHHhhCCCC-----ccceeccccCCChhhceeEEEEEEeccc
Confidence            7999999999999999876543     58999974  567889999999999885

>smart00239 C2 Protein kinase C conserved region 2 (CalB)

Probab=99.37  E-value=8.7e-12  Score=95.18  Aligned_cols=94  Identities=24%  Similarity=0.444  Sum_probs=79.2

Q ss_pred             EEEEEEEEeecCCCCCCCCCCCCCcEEEEEEcCC--ceEEEEeecCCCCCCccccEEEEeeeCCCCCceEEEEEEeccCC
Q 021710           20 DLEITIICAKHLKNVNWRNGGDLKPYVVFYVDPA--YRLATQSDDSGSTRPVWNERFTLPITHSVRESVLTLEIFHSKLS   97 (308)
Q Consensus        20 ~L~VtIisAk~L~~~~~~~~~~~dPYv~v~l~~~--~k~kT~v~k~gt~nP~WnE~f~f~l~~~~~~~~L~l~V~d~~~~   97 (308)
                      .|.|+|+++++|.......  ..+|||++.+...  ...+|+++.+ +.+|.|||+|.|.+.... ...|.|+||+.+. 
T Consensus         1 ~l~i~i~~~~~l~~~~~~~--~~~~yv~v~~~~~~~~~~~T~~~~~-~~~P~w~e~~~~~~~~~~-~~~l~i~v~~~~~-   75 (101)
T smart00239        1 TLTVKIISARNLPKKDKKG--KSDPYVKVSLDGDPKEKKKTKVVKN-TLNPVWNETFEFEVPPPE-LAELEIEVYDKDR-   75 (101)
T ss_pred             CeEEEEEEeeCCCCCCCCC--CCCceEEEEEeCCccceEeeeEecC-CCCCcccceEEEEecCcc-cCEEEEEEEecCC-
Confidence            3789999999998876544  4899999999874  5899999988 779999999999998742 7889999999883 


Q ss_pred             CCCCceeeeEEEeCcccccCC
Q 021710           98 ETPKPLVGSVKFPLAHLVDSD  118 (308)
Q Consensus        98 ~~~d~lLG~~~ipL~~L~~~~  118 (308)
                      ...+.+||.+.++|.++....
T Consensus        76 ~~~~~~~G~~~~~l~~~~~~~   96 (101)
T smart00239       76 FGRDDFIGQVTIPLSDLLLGG   96 (101)
T ss_pred             ccCCceeEEEEEEHHHcccCc
Confidence            446889999999999987643

Ca2+-binding motif present in phospholipases, protein kinases C, and synaptotamins (among others). Some do not appear to contain Ca2+-binding sites. Particular C2s appear to bind phospholipids, inositol polyphosphates, and intracellular proteins. Unusual occurrence in perforin. Synaptotagmin and PLC C2s are permuted in sequence with respect to N- and C-terminal beta strands. SMART detects C2 domains using one or both of two profiles.

>cd00030 C2 C2 domain

Probab=99.37  E-value=8.6e-12  Score=94.50  Aligned_cols=90  Identities=27%  Similarity=0.536  Sum_probs=76.9

Q ss_pred             EEEEEEEeecCCCCCCCCCCCCCcEEEEEEcCCceEEEEeecCCCCCCccccEEEEeeeCCCCCceEEEEEEeccCCCCC
Q 021710           21 LEITIICAKHLKNVNWRNGGDLKPYVVFYVDPAYRLATQSDDSGSTRPVWNERFTLPITHSVRESVLTLEIFHSKLSETP  100 (308)
Q Consensus        21 L~VtIisAk~L~~~~~~~~~~~dPYv~v~l~~~~k~kT~v~k~gt~nP~WnE~f~f~l~~~~~~~~L~l~V~d~~~~~~~  100 (308)
                      |.|.|++|++|.......  ..++||++.+......+|+++.+ +.||.|||.|.|.+... ....|.|+||+.+. ...
T Consensus         1 l~v~i~~~~~l~~~~~~~--~~~~~v~v~~~~~~~~~T~~~~~-~~~P~w~~~~~~~~~~~-~~~~l~i~v~~~~~-~~~   75 (102)
T cd00030           1 LRVTVIEARNLPAKDLNG--KSDPYVKVSLGGKQKFKTKVVKN-TLNPVWNETFEFPVLDP-ESDTLTVEVWDKDR-FSK   75 (102)
T ss_pred             CEEEEEeeeCCCCcCCCC--CCCcEEEEEeccCceEecceeCC-CCCCcccceEEEEccCC-CCCEEEEEEEecCC-CCC
Confidence            579999999998765554  49999999998657889999987 89999999999999863 35789999999883 456


Q ss_pred             CceeeeEEEeCcccc
Q 021710          101 KPLVGSVKFPLAHLV  115 (308)
Q Consensus       101 d~lLG~~~ipL~~L~  115 (308)
                      +.+||++.+++.++.
T Consensus        76 ~~~ig~~~~~l~~l~   90 (102)
T cd00030          76 DDFLGEVEIPLSELL   90 (102)
T ss_pred             CceeEEEEEeHHHhh
Confidence            889999999999998

The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions.

>PLN02223 phosphoinositide phospholipase C

Probab=99.35  E-value=1.2e-11  Score=122.21  Aligned_cols=118  Identities=16%  Similarity=0.386  Sum_probs=91.1

Q ss_pred             ccEEEEEEEEeecCC-C----CCCCCCCCCCcEEEEEEcC----CceEEEEeecCCCCCCccccEEEEeeeCCCCCceEE
Q 021710           18 THDLEITIICAKHLK-N----VNWRNGGDLKPYVVFYVDP----AYRLATQSDDSGSTRPVWNERFTLPITHSVRESVLT   88 (308)
Q Consensus        18 ~~~L~VtIisAk~L~-~----~~~~~~~~~dPYv~v~l~~----~~k~kT~v~k~gt~nP~WnE~f~f~l~~~~~~~~L~   88 (308)
                      ..+|.|+|+++.++. .    .+...  ..||||+|.+.+    ..+.+|++..+ +.||+|||+|.|.|..+ +-..|.
T Consensus       408 ~~~L~V~Visgq~~~~~~~k~~~~~s--~~DpyV~VeI~Gvp~D~~~~kT~v~nN-g~nPvWne~F~F~i~~P-ELAlLr  483 (537)
T PLN02223        408 VKILKVKIYMGDGWIVDFKKRIGRLS--KPDLYVRISIAGVPHDEKIMKTTVKNN-EWKPTWGEEFTFPLTYP-DLALIS  483 (537)
T ss_pred             ceEEEEEEEEcccccCCcccccCCCC--CCCeEEEEEEeeccCCcceeEEEeCCC-CcCceecceeEEEEEcc-CceEEE
Confidence            478999999999873 1    12222  489999999964    24667765554 89999999999999765 466799


Q ss_pred             EEEEeccCCCCCCceeeeEEEeCcccccCCCCCCCceeEEEEEeCCCCCC--ccEEEEEEEE
Q 021710           89 LEIFHSKLSETPKPLVGSVKFPLAHLVDSDSSEPTQYVRKLEVLRPSGRP--QGKIRVKLVL  148 (308)
Q Consensus        89 l~V~d~~~~~~~d~lLG~~~ipL~~L~~~~~~~~~~~~~~~~L~~~sg~~--~G~L~v~v~~  148 (308)
                      |+|+|+|. ...++|||+..||++.|..+        .++++|++..|+.  .-+|.+++.|
T Consensus       484 f~V~D~D~-~~~ddfiGQ~~LPv~~Lr~G--------yR~VpL~~~~g~~l~~~~Ll~~f~~  536 (537)
T PLN02223        484 FEVYDYEV-STADAFCGQTCLPVSELIEG--------IRAVPLYDERGKACSSTMLLTRFKW  536 (537)
T ss_pred             EEEEecCC-CCCCcEEEEEecchHHhcCC--------ceeEeccCCCcCCCCCceEEEEEEe
Confidence            99999983 46789999999999999875        3778999887775  3466666655

>PLN02952 phosphoinositide phospholipase C

Probab=99.31  E-value=3.1e-11  Score=121.51  Aligned_cols=118  Identities=16%  Similarity=0.312  Sum_probs=92.5

Q ss_pred             ccEEEEEEEEeecCCCC------CCCCCCCCCcEEEEEEcC----CceEEEEeecCCCCCCccccEEEEeeeCCCCCceE
Q 021710           18 THDLEITIICAKHLKNV------NWRNGGDLKPYVVFYVDP----AYRLATQSDDSGSTRPVWNERFTLPITHSVRESVL   87 (308)
Q Consensus        18 ~~~L~VtIisAk~L~~~------~~~~~~~~dPYv~v~l~~----~~k~kT~v~k~gt~nP~WnE~f~f~l~~~~~~~~L   87 (308)
                      ...|.|+|+++.+|...      +...  ..||||+|.+.+    ..+.+|+++++ +.||+|||+|.|.+..+ +-..|
T Consensus       469 ~~~L~V~VisGq~l~lp~~~~~~~~~~--~~D~yV~V~i~G~p~D~~~~kTkvi~n-N~nPvWnE~F~F~i~~P-ELAll  544 (599)
T PLN02952        469 KKTLKVKVYLGDGWRLDFSHTHFDSYS--PPDFYTKMYIVGVPADNAKKKTKIIED-NWYPAWNEEFSFPLTVP-ELALL  544 (599)
T ss_pred             cceEEEEEEECcccCCCCccccCCccC--CCCceEEEEEeccCCCCcceeeeeccC-CCCcccCCeeEEEEEcC-CccEE
Confidence            47899999999887421      1111  358999999864    36789999998 69999999999998864 45679


Q ss_pred             EEEEEeccCCCCCCceeeeEEEeCcccccCCCCCCCceeEEEEEeCCCCCCccEEEEEEEE
Q 021710           88 TLEIFHSKLSETPKPLVGSVKFPLAHLVDSDSSEPTQYVRKLEVLRPSGRPQGKIRVKLVL  148 (308)
Q Consensus        88 ~l~V~d~~~~~~~d~lLG~~~ipL~~L~~~~~~~~~~~~~~~~L~~~sg~~~G~L~v~v~~  148 (308)
                      .|+|||++. ...++|||++.|||+.|..+        .+|++|++..|+..+.+.|-|+|
T Consensus       545 rf~V~D~D~-~~~ddfiGq~~lPv~~Lr~G--------yR~VpL~~~~G~~l~~a~Llv~f  596 (599)
T PLN02952        545 RIEVREYDM-SEKDDFGGQTCLPVSELRPG--------IRSVPLHDKKGEKLKNVRLLMRF  596 (599)
T ss_pred             EEEEEecCC-CCCCCeEEEEEcchhHhcCC--------ceeEeCcCCCCCCCCCEEEEEEE
Confidence            999999883 56789999999999999875        37899998888876655555444

>cd08374 C2F_Ferlin C2 domain sixth repeat in Ferlin

Probab=99.28  E-value=2.6e-11  Score=100.47  Aligned_cols=97  Identities=20%  Similarity=0.255  Sum_probs=78.5

Q ss_pred             EEEEEEEEeecCCCCCC--CCCCCCCcEEEEEEcC--CceEEEEeecCCCCC--CccccEEEEeeeCC------------
Q 021710           20 DLEITIICAKHLKNVNW--RNGGDLKPYVVFYVDP--AYRLATQSDDSGSTR--PVWNERFTLPITHS------------   81 (308)
Q Consensus        20 ~L~VtIisAk~L~~~~~--~~~~~~dPYv~v~l~~--~~k~kT~v~k~gt~n--P~WnE~f~f~l~~~------------   81 (308)
                      +|+|+|.+|+++...+.  .+...+|+||++|+..  ..+++|.|..+ +.|  |.||+.|.|++...            
T Consensus         1 eLRViIw~~~~v~~~~~~~~g~~~sD~yVK~~L~~~~~~kqkTDVHyr-slnG~~~FNwRfvF~~~~~~~~~~~~~~~~~   79 (133)
T cd08374           1 ELRVIVWNTRDVLNDDTNITGEKMSDIYVKGWLDGLEEDKQKTDVHYR-SLDGEGNFNWRFVFPFDYLPAEKKIVVIKKE   79 (133)
T ss_pred             CEEEEEEECcCCcccccccCCccccCeEEEEEEccCcccccccceEEe-cCCCCcEEeEEEEEeeecCCccceeEEEeec
Confidence            48999999999654332  3312499999999986  47899999998 888  99999999987641            


Q ss_pred             ----------CCCceEEEEEEeccCCCCCCceeeeEEEeCcccccCC
Q 021710           82 ----------VRESVLTLEIFHSKLSETPKPLVGSVKFPLAHLVDSD  118 (308)
Q Consensus        82 ----------~~~~~L~l~V~d~~~~~~~d~lLG~~~ipL~~L~~~~  118 (308)
                                +....|.|+|||.| ....|++||++.++|..+....
T Consensus        80 ~~~~~~~~e~~~~~~L~lqvwD~D-~~s~dd~iG~~~l~l~~l~~~~  125 (133)
T cd08374          80 HFWSLDETEYKIPPKLTLQVWDND-KFSPDDFLGSLELDLSILPRPA  125 (133)
T ss_pred             cccccCcceEecCcEEEEEEEECc-ccCCCCcceEEEEEhhhccccc
Confidence                      23468999999999 4678999999999999987654

Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen

>cd08689 C2_fungal_Pkc1p C2 domain found in protein kinase C (Pkc1p) in Saccharomyces cerevisiae

Probab=99.25  E-value=1.7e-11  Score=96.65  Aligned_cols=86  Identities=22%  Similarity=0.413  Sum_probs=73.1

Q ss_pred             EEEEEEEeecCCCCC---CCCCCCCCcEEEEEEcCCceEEEEeecCCCCCCccccEEEEeeeCCCCCceEEEEEEeccCC
Q 021710           21 LEITIICAKHLKNVN---WRNGGDLKPYVVFYVDPAYRLATQSDDSGSTRPVWNERFTLPITHSVRESVLTLEIFHSKLS   97 (308)
Q Consensus        21 L~VtIisAk~L~~~~---~~~~~~~dPYv~v~l~~~~k~kT~v~k~gt~nP~WnE~f~f~l~~~~~~~~L~l~V~d~~~~   97 (308)
                      |+|+|.++++|....   ++.  .+++||++.++...+.||++    +.||.|||+|.|++..   ..++.|.|||+.  
T Consensus         1 L~I~V~~~RdvdH~~~~~~~~--~~etyV~IKved~~kaRTr~----srnd~WnE~F~i~Vdk---~nEiel~VyDk~--   69 (109)
T cd08689           1 LTITITSARDVDHIASPRFSK--RPETYVSIKVEDVERARTKP----SRNDRWNEDFEIPVEK---NNEEEVIVYDKG--   69 (109)
T ss_pred             CEEEEEEEecCccccchhhcc--CCCcEEEEEECCEEEEeccC----CCCCcccceEEEEecC---CcEEEEEEEeCC--
Confidence            689999999999887   344  49999999999877899988    4799999999999953   678999999987  


Q ss_pred             CCCCceeeeEEEeCcccccC
Q 021710           98 ETPKPLVGSVKFPLAHLVDS  117 (308)
Q Consensus        98 ~~~d~lLG~~~ipL~~L~~~  117 (308)
                      ....-.||...|.|++|.+.
T Consensus        70 ~~~~~Pi~llW~~~sdi~Ee   89 (109)
T cd08689          70 GDQPVPVGLLWLRLSDIAEE   89 (109)
T ss_pred             CCeecceeeehhhHHHHHHH
Confidence            33556899999999998763

This family is named after the protein kinase C in Saccharomyces cerevisiae, Pkc1p. Protein kinase C is a member of a family of Ser/Thr phosphotransferases that are involved in many cellular signaling pathways. PKC has two antiparallel coiled-coiled regions (ACC finger domain) (AKA PKC homology region 1 (HR1)/ Rho binding domain) upstream of the C2 domain and two C1 domains downstream. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains, like those of PKC, are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that

>KOG0169 consensus Phosphoinositide-specific phospholipase C [Signal transduction mechanisms]

Probab=99.24  E-value=5.9e-11  Score=119.85  Aligned_cols=121  Identities=16%  Similarity=0.303  Sum_probs=97.4

Q ss_pred             cEEEEEEEEeecCCC-CCC--CCCCCCCcEEEEEEcC----CceEEEEeecCCCCCCccccEEEEeeeCCCCCceEEEEE
Q 021710           19 HDLEITIICAKHLKN-VNW--RNGGDLKPYVVFYVDP----AYRLATQSDDSGSTRPVWNERFTLPITHSVRESVLTLEI   91 (308)
Q Consensus        19 ~~L~VtIisAk~L~~-~~~--~~~~~~dPYv~v~l~~----~~k~kT~v~k~gt~nP~WnE~f~f~l~~~~~~~~L~l~V   91 (308)
                      .+|.|+|+++.++.. .+.  ++. ..||||.|.+.+    ..+.+|+++++++.||.|+|+|+|.|.-+ +-..|.|.|
T Consensus       616 ~tL~IkI~sGq~~~~~~~~~~~~~-~~dP~v~VeI~Gvp~D~~~~~Tk~v~~NgfnP~W~e~f~F~l~vP-ELAliRF~V  693 (746)
T KOG0169|consen  616 KTLKIKIISGQGWLPDFGKTKFGE-ISDPDVYVEIAGVPADCAEQKTKVVKNNGFNPIWDEEFEFQLSVP-ELALIRFEV  693 (746)
T ss_pred             ceeEEEEEecCcccCCCCCCcccc-cCCCCEEEEEcccccchhhhhceeeccCCcCcccCCeEEEEEecc-ceeEEEEEE
Confidence            389999999996532 222  223 589999999865    35889998888899999999999999875 457899999


Q ss_pred             EeccCCCCCCceeeeEEEeCcccccCCCCCCCceeEEEEEeCCCCCC--ccEEEEEEEEcc
Q 021710           92 FHSKLSETPKPLVGSVKFPLAHLVDSDSSEPTQYVRKLEVLRPSGRP--QGKIRVKLVLNG  150 (308)
Q Consensus        92 ~d~~~~~~~d~lLG~~~ipL~~L~~~~~~~~~~~~~~~~L~~~sg~~--~G~L~v~v~~~~  150 (308)
                      +|.+. ..+|+|+|+.+||+.+|..+        .+.++|.+..|..  .-+|.|+|++.+
T Consensus       694 ~d~d~-~~~ddF~GQ~tlP~~~L~~G--------yRhVpL~~~~G~~~~~asLfv~i~~~~  745 (746)
T KOG0169|consen  694 HDYDY-IGKDDFIGQTTLPVSELRQG--------YRHVPLLSREGEALSSASLFVRIAIVE  745 (746)
T ss_pred             EecCC-CCcccccceeeccHHHhhCc--------eeeeeecCCCCccccceeEEEEEEEec
Confidence            99994 67899999999999999874        3668888877764  578888888865

>PLN02230 phosphoinositide phospholipase C 4

Probab=99.22  E-value=1.2e-10  Score=117.12  Aligned_cols=120  Identities=11%  Similarity=0.280  Sum_probs=92.7

Q ss_pred             ccEEEEEEEEeecCCC----CCCCCCCCCCcEEEEEEcC----CceEEEEeecCCCCCCccccEEEEeeeCCCCCceEEE
Q 021710           18 THDLEITIICAKHLKN----VNWRNGGDLKPYVVFYVDP----AYRLATQSDDSGSTRPVWNERFTLPITHSVRESVLTL   89 (308)
Q Consensus        18 ~~~L~VtIisAk~L~~----~~~~~~~~~dPYv~v~l~~----~~k~kT~v~k~gt~nP~WnE~f~f~l~~~~~~~~L~l   89 (308)
                      ..+|.|+|+++.++..    .........||||+|.+.+    ..+.+|++..+ +.||+|||+|.|.+..+ +-..|.|
T Consensus       468 ~~~L~V~VisGq~~~l~~~k~~~~~~s~~DpyV~Vei~Gvp~D~~~~kT~v~~n-~~nP~Wneef~F~l~vP-ELAllRf  545 (598)
T PLN02230        468 KKTLKVKVCMGDGWLLDFKKTHFDSYSPPDFFVRVGIAGAPVDEVMEKTKIEYD-TWTPIWNKEFIFPLAVP-ELALLRV  545 (598)
T ss_pred             CcEEEEEEEEccCccCCCccccCCCCCCCCceEEEEEEECCCCCcccceeccCC-CCCCccCCeeEEEEEcC-ceeEEEE
Confidence            5789999999998631    1111111479999999854    34678998776 89999999999998764 5678999


Q ss_pred             EEEeccCCCCCCceeeeEEEeCcccccCCCCCCCceeEEEEEeCCCCCC--ccEEEEEEEE
Q 021710           90 EIFHSKLSETPKPLVGSVKFPLAHLVDSDSSEPTQYVRKLEVLRPSGRP--QGKIRVKLVL  148 (308)
Q Consensus        90 ~V~d~~~~~~~d~lLG~~~ipL~~L~~~~~~~~~~~~~~~~L~~~sg~~--~G~L~v~v~~  148 (308)
                      +|+|++. ...++|||+..|||..|..+        .+.++|++..|..  .-+|.+++.|
T Consensus       546 ~V~d~d~-~~~ddfiGQ~~lPv~~Lr~G--------yR~V~L~~~~G~~l~~~~Ll~~f~~  597 (598)
T PLN02230        546 EVHEHDI-NEKDDFGGQTCLPVSEIRQG--------IHAVPLFNRKGVKYSSTRLLMRFEF  597 (598)
T ss_pred             EEEECCC-CCCCCEEEEEEcchHHhhCc--------cceEeccCCCcCCCCCCeeEEEEEe
Confidence            9999883 46899999999999999875        3678998887765  4577777766

>PLN02222 phosphoinositide phospholipase C 2

Probab=99.22  E-value=2.2e-10  Score=115.08  Aligned_cols=120  Identities=18%  Similarity=0.293  Sum_probs=92.7

Q ss_pred             ccEEEEEEEEeecCC----CCCCCCCCCCCcEEEEEEcC----CceEEEEeecCCCCCCccccEEEEeeeCCCCCceEEE
Q 021710           18 THDLEITIICAKHLK----NVNWRNGGDLKPYVVFYVDP----AYRLATQSDDSGSTRPVWNERFTLPITHSVRESVLTL   89 (308)
Q Consensus        18 ~~~L~VtIisAk~L~----~~~~~~~~~~dPYv~v~l~~----~~k~kT~v~k~gt~nP~WnE~f~f~l~~~~~~~~L~l   89 (308)
                      ..+|.|+|+++.++.    ..........||||+|.+.+    ..+.+|+++++ +.||+|||+|.|.+..+ +-..|.|
T Consensus       451 ~~~L~V~Visgq~~~l~~~~~~~~~~~~~dpyV~Vei~G~p~D~~~~rTk~v~n-n~nP~W~e~f~F~i~~P-eLAllRf  528 (581)
T PLN02222        451 KTTLRVTIYMGEGWYFDFRHTHFDQYSPPDFYTRVGIAGVPGDTVMKKTKTLED-NWIPAWDEVFEFPLTVP-ELALLRL  528 (581)
T ss_pred             cceEEEEEEEcccccCCCCccccCCCCCCCeeEEEEEeccCCCcceeeeEecCC-CCCcccCCeeEEEEEcC-ceeEEEE
Confidence            468999999998742    21111111479999999963    35789999998 58999999999998764 4578999


Q ss_pred             EEEeccCCCCCCceeeeEEEeCcccccCCCCCCCceeEEEEEeCCCCCC--ccEEEEEEEE
Q 021710           90 EIFHSKLSETPKPLVGSVKFPLAHLVDSDSSEPTQYVRKLEVLRPSGRP--QGKIRVKLVL  148 (308)
Q Consensus        90 ~V~d~~~~~~~d~lLG~~~ipL~~L~~~~~~~~~~~~~~~~L~~~sg~~--~G~L~v~v~~  148 (308)
                      .|+|+|. ...++|||+..|||+.|..+        .+.++|++..|..  .-+|.|.|.|
T Consensus       529 ~V~d~D~-~~~ddfigq~~lPv~~Lr~G--------yR~V~L~~~~g~~l~~a~Lfv~~~~  580 (581)
T PLN02222        529 EVHEYDM-SEKDDFGGQTCLPVWELSQG--------IRAFPLHSRKGEKYKSVKLLVKVEF  580 (581)
T ss_pred             EEEECCC-CCCCcEEEEEEcchhhhhCc--------cceEEccCCCcCCCCCeeEEEEEEe
Confidence            9999873 46789999999999999875        3678998887765  4477777765

>PLN02228 Phosphoinositide phospholipase C

Probab=99.19  E-value=3.1e-10  Score=113.64  Aligned_cols=123  Identities=15%  Similarity=0.279  Sum_probs=96.0

Q ss_pred             ccEEEEEEEEeecCCC---CCCC-CCCCCCcEEEEEEcC----CceEEEEeecCCCCCCcc-ccEEEEeeeCCCCCceEE
Q 021710           18 THDLEITIICAKHLKN---VNWR-NGGDLKPYVVFYVDP----AYRLATQSDDSGSTRPVW-NERFTLPITHSVRESVLT   88 (308)
Q Consensus        18 ~~~L~VtIisAk~L~~---~~~~-~~~~~dPYv~v~l~~----~~k~kT~v~k~gt~nP~W-nE~f~f~l~~~~~~~~L~   88 (308)
                      ...|+|+|+++.+|..   .... .....||||+|.+.+    ..+.+|+++++ +.||+| ||+|.|.+..+ +-..|.
T Consensus       430 ~~~L~I~ViSGq~l~lp~~~~~~~~~~~~DpyV~Vei~G~p~D~~~~rTk~~~n-~~nP~W~~e~f~F~~~~p-ELA~lR  507 (567)
T PLN02228        430 KTTLKVKIYTGEGWDLDFHLTHFDQYSPPDFFVKIGIAGVPRDTVSYRTETAVD-QWFPIWGNDEFLFQLRVP-ELALLW  507 (567)
T ss_pred             CceEEEEEEECCccCCCCCCCCCCCCCCCCcEEEEEEEecCCCCCcceeeccCC-CCCceECCCeEEEEEEcC-ceeEEE
Confidence            4589999999998721   1111 001379999999864    35679999987 689999 99999998764 457899


Q ss_pred             EEEEeccCCCCCCceeeeEEEeCcccccCCCCCCCceeEEEEEeCCCCCC--ccEEEEEEEEccC
Q 021710           89 LEIFHSKLSETPKPLVGSVKFPLAHLVDSDSSEPTQYVRKLEVLRPSGRP--QGKIRVKLVLNGR  151 (308)
Q Consensus        89 l~V~d~~~~~~~d~lLG~~~ipL~~L~~~~~~~~~~~~~~~~L~~~sg~~--~G~L~v~v~~~~~  151 (308)
                      |.|+|++ ....++|||++.|||+.|..+        .+.++|.+..|+.  ..+|.|+|.+.+.
T Consensus       508 f~V~D~d-~~~~d~figq~~lPv~~Lr~G--------YR~VpL~~~~G~~l~~atLfv~~~~~~~  563 (567)
T PLN02228        508 FKVQDYD-NDTQNDFAGQTCLPLPELKSG--------VRAVRLHDRAGKAYKNTRLLVSFALDPP  563 (567)
T ss_pred             EEEEeCC-CCCCCCEEEEEEcchhHhhCC--------eeEEEccCCCCCCCCCeEEEEEEEEcCc
Confidence            9999987 355789999999999999764        4678998888775  5679999998765

>COG5038 Ca2+-dependent lipid-binding protein, contains C2 domain [General function prediction only]

Probab=99.19  E-value=1.3e-10  Score=121.47  Aligned_cols=124  Identities=24%  Similarity=0.349  Sum_probs=101.6

Q ss_pred             ccEEEEEEEEeecCCCCCC-CCCCCCCcEEEEEEcCCceEEEEeecCCCCCCccccEEEEeeeCCCCCceEEEEEEeccC
Q 021710           18 THDLEITIICAKHLKNVNW-RNGGDLKPYVVFYVDPAYRLATQSDDSGSTRPVWNERFTLPITHSVRESVLTLEIFHSKL   96 (308)
Q Consensus        18 ~~~L~VtIisAk~L~~~~~-~~~~~~dPYv~v~l~~~~k~kT~v~k~gt~nP~WnE~f~f~l~~~~~~~~L~l~V~d~~~   96 (308)
                      -++|+|+|.+|++|+..+. .++ ..|||+++.+......||++.++ +.||+|||+|.+.|..  -...|.|+|||.+ 
T Consensus       435 IGVv~vkI~sa~~lk~~d~~i~~-~vDpyit~~~~~r~~gkT~v~~n-t~nPvwNEt~Yi~lns--~~d~L~LslyD~n-  509 (1227)
T COG5038         435 IGVVEVKIKSAEGLKKSDSTING-TVDPYITVTFSDRVIGKTRVKKN-TLNPVWNETFYILLNS--FTDPLNLSLYDFN-  509 (1227)
T ss_pred             eEEEEEEEeeccCcccccccccC-CCCceEEEEeccccCCccceeec-cCCccccceEEEEecc--cCCceeEEEEecc-
Confidence            4899999999999998772 333 79999999987656779999998 9999999999999986  4778999999977 


Q ss_pred             CCCCCceeeeEEEeCcccccCCCCCCCceeEEEEEeCCCCCCccEEEEEEEEccC
Q 021710           97 SETPKPLVGSVKFPLAHLVDSDSSEPTQYVRKLEVLRPSGRPQGKIRVKLVLNGR  151 (308)
Q Consensus        97 ~~~~d~lLG~~~ipL~~L~~~~~~~~~~~~~~~~L~~~sg~~~G~L~v~v~~~~~  151 (308)
                      ....|+++|++.+.|..|.......    ...+++++ +.+..|.|...++|-+.
T Consensus       510 ~~~sd~vvG~~~l~L~~L~~~~~~~----ne~~e~~~-~~k~vGrL~yDl~ffp~  559 (1227)
T COG5038         510 SFKSDKVVGSTQLDLALLHQNPVKK----NELYEFLR-NTKNVGRLTYDLRFFPV  559 (1227)
T ss_pred             ccCCcceeeeEEechHHhhhccccc----cceeeeec-cCccceEEEEeeeeecc
Confidence            3678999999999999988765443    34566643 56678999998888664

>COG5038 Ca2+-dependent lipid-binding protein, contains C2 domain [General function prediction only]

Probab=99.14  E-value=1.6e-10  Score=120.87  Aligned_cols=124  Identities=17%  Similarity=0.305  Sum_probs=100.5

Q ss_pred             ccEEEEEEEEeecCCCCCCCCCCCCCcEEEEEEcCCceEEEEeecCCCCCCccccEEEEeeeCCCCCceEEEEEEeccCC
Q 021710           18 THDLEITIICAKHLKNVNWRNGGDLKPYVVFYVDPAYRLATQSDDSGSTRPVWNERFTLPITHSVRESVLTLEIFHSKLS   97 (308)
Q Consensus        18 ~~~L~VtIisAk~L~~~~~~~~~~~dPYv~v~l~~~~k~kT~v~k~gt~nP~WnE~f~f~l~~~~~~~~L~l~V~d~~~~   97 (308)
                      .+.|+|.++++.||+..+..+.  +||||++.+.....++|+++++ ++||+|||.|.+.|.+. ....|.|.|+||+. 
T Consensus      1039 sG~l~I~~~~~~nl~~~d~ng~--sDpfv~~~ln~k~vyktkv~Kk-tlNPvwNEe~~i~v~~r-~~D~~~i~v~Dwd~- 1113 (1227)
T COG5038        1039 SGYLTIMLRSGENLPSSDENGY--SDPFVKLFLNEKSVYKTKVVKK-TLNPVWNEEFTIEVLNR-VKDVLTINVNDWDS- 1113 (1227)
T ss_pred             cCcEEEEEeccCCCcccccCCC--CCceEEEEecceecccccchhc-cCCCCccccceEeeecc-ccceEEEEEeeccc-
Confidence            5889999999999999998875  9999999999877999999999 99999999999999864 35679999999994 


Q ss_pred             CCCCceeeeEEEeCcccccCCCCCCCceeEEEEEeCCC-CCCccEEEEEEEEccC
Q 021710           98 ETPKPLVGSVKFPLAHLVDSDSSEPTQYVRKLEVLRPS-GRPQGKIRVKLVLNGR  151 (308)
Q Consensus        98 ~~~d~lLG~~~ipL~~L~~~~~~~~~~~~~~~~L~~~s-g~~~G~L~v~v~~~~~  151 (308)
                      ..++++||.+.|+|+.|..+....     ....|..+. ....|.++..+.++.+
T Consensus      1114 ~~knd~lg~~~idL~~l~~~~~~n-----~~i~ldgk~~~~~~g~~~~~~~~r~~ 1163 (1227)
T COG5038        1114 GEKNDLLGTAEIDLSKLEPGGTTN-----SNIPLDGKTFIVLDGTLHPGFNFRSK 1163 (1227)
T ss_pred             CCCccccccccccHhhcCcCCccc-----eeeeccCcceEecccEeecceecchh
Confidence            668999999999999998764331     223332211 2346788887777765

>KOG1028 consensus Ca2+-dependent phospholipid-binding protein Synaptotagmin, required for synaptic vesicle and secretory granule exocytosis [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]

Probab=99.09  E-value=4.3e-10  Score=110.08  Aligned_cols=92  Identities=21%  Similarity=0.328  Sum_probs=78.0

Q ss_pred             ccEEEEEEEEeecCCCCCCCCCCCCCcEEEEEEcC----CceEEEEeecCCCCCCccccEEEEeeeCC-CCCceEEEEEE
Q 021710           18 THDLEITIICAKHLKNVNWRNGGDLKPYVVFYVDP----AYRLATQSDDSGSTRPVWNERFTLPITHS-VRESVLTLEIF   92 (308)
Q Consensus        18 ~~~L~VtIisAk~L~~~~~~~~~~~dPYv~v~l~~----~~k~kT~v~k~gt~nP~WnE~f~f~l~~~-~~~~~L~l~V~   92 (308)
                      .+.|+|.|++|++|+..+..+  ..|+||++++..    ..+.+|.+.++ +.||+|||+|.|.|... +....|.|+||
T Consensus       297 ~g~ltv~v~kar~L~~~~~~~--~~d~~Vk~~l~~~~~~~~kkkT~~~~~-~~npv~nesf~F~vp~~~l~~~~l~l~V~  373 (421)
T KOG1028|consen  297 AGRLTVVVIKARNLKSMDVGG--LSDPYVKVTLLDGDKRLSKKKTSVKKK-TLNPVFNETFVFDVPPEQLAEVSLELTVW  373 (421)
T ss_pred             CCeEEEEEEEecCCCcccCCC--CCCccEEEEEecCCceeeeeeeecccC-CCCCcccccEEEeCCHHHhheeEEEEEEE
Confidence            589999999999999888766  489999999854    25788998888 99999999999998753 45678999999


Q ss_pred             eccCCCCCCceeeeEEEeCcc
Q 021710           93 HSKLSETPKPLVGSVKFPLAH  113 (308)
Q Consensus        93 d~~~~~~~d~lLG~~~ipL~~  113 (308)
                      |++ ....+++||.+.+....
T Consensus       374 d~d-~~~~~~~iG~~~lG~~~  393 (421)
T KOG1028|consen  374 DHD-TLGSNDLIGRCILGSDS  393 (421)
T ss_pred             Ecc-cccccceeeEEEecCCC
Confidence            999 46778899998887664

>PLN02352 phospholipase D epsilon

Probab=99.06  E-value=1.4e-09  Score=111.50  Aligned_cols=120  Identities=19%  Similarity=0.239  Sum_probs=94.1

Q ss_pred             CcccEEEEEEEEeecCCCC----CCCCCCCCCcEEEEEEcCCceEEEEeecCCCCCCccccEEEEeeeCCCCCceEEEEE
Q 021710           16 PITHDLEITIICAKHLKNV----NWRNGGDLKPYVVFYVDPAYRLATQSDDSGSTRPVWNERFTLPITHSVRESVLTLEI   91 (308)
Q Consensus        16 ~~~~~L~VtIisAk~L~~~----~~~~~~~~dPYv~v~l~~~~k~kT~v~k~gt~nP~WnE~f~f~l~~~~~~~~L~l~V   91 (308)
                      ...++|++||.+|+.+...    ...+. ..+|||+|.++..++.||   .+ ..||+|||+|.+.+... .+..|.|.|
T Consensus         7 ~lhg~l~~~i~~~~~~~~~~~~~~~~~~-~~~~y~tv~~~~~~v~rt---~~-~~~p~w~e~f~i~~ah~-~~~~~~f~v   80 (758)
T PLN02352          7 FFHGTLEATIFDATPYTPPFPFNCIFLN-GKATYVTIKIGNKKVAKT---SH-EYDRVWNQTFQILCAHP-LDSTITITL   80 (758)
T ss_pred             ccccceEEEEEEeeehhhcccccccccC-CCCceEEEEeCCcEEecC---CC-CCCCccccceeEEeeee-cCCcEEEEE
Confidence            3468999999999854322    11122 249999999998888888   44 67999999999999874 235789999


Q ss_pred             EeccCCCCCCceeeeEEEeCcccccCCCCCCCceeEEEEEeCCCCCC-cc-EEEEEEEEccC
Q 021710           92 FHSKLSETPKPLVGSVKFPLAHLVDSDSSEPTQYVRKLEVLRPSGRP-QG-KIRVKLVLNGR  151 (308)
Q Consensus        92 ~d~~~~~~~d~lLG~~~ipL~~L~~~~~~~~~~~~~~~~L~~~sg~~-~G-~L~v~v~~~~~  151 (308)
                      .|.      ..+||.+.||+.+|+.+..    ....||+|.+.++++ .| +|+|+++|.+.
T Consensus        81 k~~------~~~ig~~~~p~~~~~~g~~----~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~  132 (758)
T PLN02352         81 KTK------CSILGRFHIQAHQIVTEAS----FINGFFPLIMENGKPNPELKLRFMLWFRPA  132 (758)
T ss_pred             ecC------CeEEEEEEEEHHHhhCCCc----ccceEEEcccCCCCCCCCCEEEEEEEEEEh
Confidence            882      4699999999999998643    246999999988886 44 99999999885

>KOG1264 consensus Phospholipase C [Lipid transport and metabolism]

Probab=99.00  E-value=3.2e-09  Score=107.46  Aligned_cols=121  Identities=15%  Similarity=0.315  Sum_probs=94.0

Q ss_pred             ccEEEEEEEEeecCCCCCCCCCCCCCcEEEEEEcC----CceEEEEeecCCCCCCccc-cEEEEeeeCCCCCceEEEEEE
Q 021710           18 THDLEITIICAKHLKNVNWRNGGDLKPYVVFYVDP----AYRLATQSDDSGSTRPVWN-ERFTLPITHSVRESVLTLEIF   92 (308)
Q Consensus        18 ~~~L~VtIisAk~L~~~~~~~~~~~dPYv~v~l~~----~~k~kT~v~k~gt~nP~Wn-E~f~f~l~~~~~~~~L~l~V~   92 (308)
                      ...|.|.|+.|++|...+..   ...|||+|.+-+    ..+++|+++.+|++||+|| |+|+|.|.++ +-..|.|.|+
T Consensus      1064 p~~lsv~vigaRHL~k~gr~---i~cPfVevEiiGa~~Dt~~~~t~~V~dNGlnPiWn~e~ftFeI~nP-e~A~lRF~V~ 1139 (1267)
T KOG1264|consen 1064 PMTLSVKVLGARHLPKLGRS---IACPFVEVEIIGAEYDTNKFKTTVVNDNGLNPIWNPEKFTFEIYNP-EFAFLRFVVY 1139 (1267)
T ss_pred             ceEEEEEEeeccccccCCCC---ccCCcEEEEEeccccCCCceEEEEeccCCCCCCCCCcceEEEeeCC-ceEEEEEEEe
Confidence            47899999999999865432   367999999854    3567777776669999999 9999999886 5778999999


Q ss_pred             eccCCCCCCceeeeEEEeCcccccCCCCCCCceeEEEEEeCCCCC--CccEEEEEEEEccC
Q 021710           93 HSKLSETPKPLVGSVKFPLAHLVDSDSSEPTQYVRKLEVLRPSGR--PQGKIRVKLVLNGR  151 (308)
Q Consensus        93 d~~~~~~~d~lLG~~~ipL~~L~~~~~~~~~~~~~~~~L~~~sg~--~~G~L~v~v~~~~~  151 (308)
                      ++|. .....||+++.+|++.|..+        .+..+|++.-.+  ...+|.|.|.+.+.
T Consensus      1140 eeDm-fs~~~FiaqA~yPv~~ik~G--------fRsVpLkN~ySEdlELaSLLv~i~m~~~ 1191 (1267)
T KOG1264|consen 1140 EEDM-FSDPNFLAQATYPVKAIKSG--------FRSVPLKNGYSEDLELASLLVFIEMRPV 1191 (1267)
T ss_pred             cccc-cCCcceeeeeecchhhhhcc--------ceeeecccCchhhhhhhhheeeeEeccc
Confidence            9994 56667999999999998764        467888754221  25677777777664

>KOG1328 consensus Synaptic vesicle protein BAIAP3, involved in vesicle priming/regulation [Intracellular trafficking, secretion, and vesicular transport; Signal transduction mechanisms]

Probab=98.97  E-value=1.1e-10  Score=116.71  Aligned_cols=126  Identities=23%  Similarity=0.397  Sum_probs=98.5

Q ss_pred             CcccEEEEEEEEeecCCCCCCCCCCCCCcEEEEEEcCC------------------------------ceEEEEeecCCC
Q 021710           16 PITHDLEITIICAKHLKNVNWRNGGDLKPYVVFYVDPA------------------------------YRLATQSDDSGS   65 (308)
Q Consensus        16 ~~~~~L~VtIisAk~L~~~~~~~~~~~dPYv~v~l~~~------------------------------~k~kT~v~k~gt   65 (308)
                      ++..-|.|.+..|++|.+++..+.  +|||+.+.+-+.                              -.+-|.|.++ |
T Consensus       111 ~P~~~l~is~~~ak~l~akd~ngf--SdP~~m~g~~p~~~~~~~pra~~eqrdgl~~~~~~~GpiPAKlIkatsvk~~-T  187 (1103)
T KOG1328|consen  111 PPSVLLNISLLEAKDLIAKDVNGF--SDPFAMMGVVPGTRKENSPRALHEQRDGLMHRFQDTGPIPAKLIKATSVKKK-T  187 (1103)
T ss_pred             CCcHHHHHHHHHhcCccccCCCCC--CChhhhhccccccccccChhhhhhhhhhhhhccccCCCCcHHHhhhcccccc-c
Confidence            345667788899999998887764  999998876321                              1234777777 9


Q ss_pred             CCCccccEEEEeeeCCCCCceEEEEEEeccCCC-----------------------------------CCCceeeeEEEe
Q 021710           66 TRPVWNERFTLPITHSVRESVLTLEIFHSKLSE-----------------------------------TPKPLVGSVKFP  110 (308)
Q Consensus        66 ~nP~WnE~f~f~l~~~~~~~~L~l~V~d~~~~~-----------------------------------~~d~lLG~~~ip  110 (308)
                      +||+|+|+|.|.|.+- ....++|.|||+|...                                   ..|+|||.+.||
T Consensus       188 LnPkW~EkF~F~IeDv-~tDqfHlDIWDHDDe~sv~dAvs~LNeV~G~kG~GRyFKqv~qSARans~d~tDDFLGciNip  266 (1103)
T KOG1328|consen  188 LNPKWSEKFQFTIEDV-QTDQFHLDIWDHDDEESVLDAVSSLNEVTGFKGIGRYFKQVTQSARANSDDCTDDFLGCINIP  266 (1103)
T ss_pred             CCcchhhheeeehhcc-ccceeeeecccCCccHHHHHHHHHHhhhhcchhHHHHHHHHHHHHhcCCCccccccccccccc
Confidence            9999999999999864 4668999999987431                                   348999999999


Q ss_pred             CcccccCCCCCCCceeEEEEEeCCCC--CCccEEEEEEEEccC
Q 021710          111 LAHLVDSDSSEPTQYVRKLEVLRPSG--RPQGKIRVKLVLNGR  151 (308)
Q Consensus       111 L~~L~~~~~~~~~~~~~~~~L~~~sg--~~~G~L~v~v~~~~~  151 (308)
                      |.+|-..+      ...||+|.-.+.  +++|.+++++++..+
T Consensus       267 l~EiP~~G------ld~WFkLepRS~~S~VqG~~~LklwLsT~  303 (1103)
T KOG1328|consen  267 LAEIPPDG------LDQWFKLEPRSDKSKVQGQVKLKLWLSTK  303 (1103)
T ss_pred             hhcCCcch------HHHHhccCcccccccccceEEEEEEEeee
Confidence            99997643      258999976544  579999999999775

>KOG1031 consensus Predicted Ca2+-dependent phospholipid-binding protein [General function prediction only]

Probab=98.87  E-value=6.7e-09  Score=102.06  Aligned_cols=128  Identities=16%  Similarity=0.247  Sum_probs=104.2

Q ss_pred             cEEEEEEEEeecCCCCCCCCCCCCCcEEEEEEcCCceEEEEeecCCCCCCcccc-EEEEeeeC-CCCCceEEEEEEeccC
Q 021710           19 HDLEITIICAKHLKNVNWRNGGDLKPYVVFYVDPAYRLATQSDDSGSTRPVWNE-RFTLPITH-SVRESVLTLEIFHSKL   96 (308)
Q Consensus        19 ~~L~VtIisAk~L~~~~~~~~~~~dPYv~v~l~~~~k~kT~v~k~gt~nP~WnE-~f~f~l~~-~~~~~~L~l~V~d~~~   96 (308)
                      +.|.|+|+.|++|+..+..+. ..|.||.+.+.. ..+||.|..+ ++||.||. .|.|.+.+ .+.+..|.|+++|++.
T Consensus         3 gkl~vki~a~r~lpvmdkasd-~tdafveik~~n-~t~ktdvf~k-slnp~wnsdwfkfevddadlqdeplqi~lld~dt   79 (1169)
T KOG1031|consen    3 GKLGVKIKAARHLPVMDKASD-LTDAFVEIKFAN-TTFKTDVFLK-SLNPQWNSDWFKFEVDDADLQDEPLQIRLLDHDT   79 (1169)
T ss_pred             CcceeEEEeccCCcccccccc-cchheeEEEecc-cceehhhhhh-hcCCcccccceEEecChhhhccCCeeEEEecccc
Confidence            678999999999998887765 689999999986 7899999999 99999995 69999986 3678899999999984


Q ss_pred             CCCCCceeeeEEEeCcccccCCCC-----CCCceeEEEEEeCCCCCCccEEEEEEEEcc
Q 021710           97 SETPKPLVGSVKFPLAHLVDSDSS-----EPTQYVRKLEVLRPSGRPQGKIRVKLVLNG  150 (308)
Q Consensus        97 ~~~~d~lLG~~~ipL~~L~~~~~~-----~~~~~~~~~~L~~~sg~~~G~L~v~v~~~~  150 (308)
                       ...++-||.+.|.|+.|.-....     .+.....||++.+.-...+|+|.|-|.+.-
T Consensus        80 -ysandaigkv~i~idpl~~e~aaqavhgkgtvisgw~pifdtihgirgeinvivkvdl  137 (1169)
T KOG1031|consen   80 -YSANDAIGKVNIDIDPLCLEEAAQAVHGKGTVISGWFPIFDTIHGIRGEINVIVKVDL  137 (1169)
T ss_pred             -cccccccceeeeccChHHHHhHHhhhcCCceEEeeeeecceecccccceeEEEEEEee
Confidence             56788999999999988653322     112346899998765556899888877643

>cd08683 C2_C2cd3 C2 domain found in C2 calcium-dependent domain containing 3 (C2cd3) proteins

Probab=98.71  E-value=2.9e-08  Score=80.95  Aligned_cols=106  Identities=21%  Similarity=0.302  Sum_probs=78.2

Q ss_pred             EEEEEEEeecCCCC---------CC--CCCCCCCcEEEEEEc---CCceEEEEeecCCCCCCccccEEEEeee-------
Q 021710           21 LEITIICAKHLKNV---------NW--RNGGDLKPYVVFYVD---PAYRLATQSDDSGSTRPVWNERFTLPIT-------   79 (308)
Q Consensus        21 L~VtIisAk~L~~~---------~~--~~~~~~dPYv~v~l~---~~~k~kT~v~k~gt~nP~WnE~f~f~l~-------   79 (308)
                      |.|.|++|.+|+..         ++  ......|+||++.+.   .....+|+++-+ +..|+|+.++.|+++       
T Consensus         1 lsv~I~RA~GLqaAA~~la~~~~~l~y~a~VGVN~yv~i~lSFl~~~e~r~TrtVAr-SFcPeF~Hh~Efpc~lv~~~~~   79 (143)
T cd08683           1 LSVQIHRASGLQAAARALAEQDPSLQYSATVGVNSYVTIHLSFLPEKELRRTRTVAR-SFCPEFNHHVEFPCNLVVQRNS   79 (143)
T ss_pred             CeEEeehhhhHHHHHHHHhhhCcccccceecccceEEEEEeccCCCCceeeccchhh-hcCCCccceEEEecccEEEcCC
Confidence            46888999998632         11  011137899999853   357889999998 999999999999876       


Q ss_pred             -C------CCCCceEEEEEEeccCCC---------CCCceeeeEEEeCcccccCCCCCCCceeEEEEE
Q 021710           80 -H------SVRESVLTLEIFHSKLSE---------TPKPLVGSVKFPLAHLVDSDSSEPTQYVRKLEV  131 (308)
Q Consensus        80 -~------~~~~~~L~l~V~d~~~~~---------~~d~lLG~~~ipL~~L~~~~~~~~~~~~~~~~L  131 (308)
                       +      .++...+.|+|||++...         .+|-+||.+.||+.+|+.....    ...||++
T Consensus        80 Ge~~sLAElLe~~eiil~vwHr~~~s~~~~~~~~~~~DilLG~v~IPl~~Ll~~rsG----itGW~pi  143 (143)
T cd08683          80 GEAISLAELLESAEIILEVWHRNPKSAGDTIKIETSGDILLGTVKIPLRDLLTKRSG----ITGWYPI  143 (143)
T ss_pred             CccccHHHHhhcceEEeeeeecCCccccceeccCcCCcEEEEEEEeeHHHHhhcccC----ccccccC
Confidence             1      135678999999987432         3566999999999999875433    1478864

C2cd3 is a novel C2 domain-containing protein specific to vertebrates. C2cd3 functions in regulator of cilia formation, Hedgehog signaling, and mouse embryonic development. Mutations in C2cd3 mice resulted in lethality in some cases and exencephaly, a twisted body axis, and pericardial edema in others. The presence of calcium-dependent lipid-binding domains in C2cd3 suggests a potential role in vesicular transport. C2cd3 is also an interesting candidate for ciliopathy because of its orthology to certain cilia-related genetic disease loci on chromosome. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances inc

>KOG3837 consensus Uncharacterized conserved protein, contains DM14 and C2 domains [General function prediction only]

Probab=98.62  E-value=2.5e-08  Score=94.82  Aligned_cols=128  Identities=20%  Similarity=0.214  Sum_probs=99.3

Q ss_pred             CcccEEEEEEEEeecCCCCCCCCCCCCCcEEEEEEc----CCceEEEEeecCCCCCCccccEEEEeeeCC----------
Q 021710           16 PITHDLEITIICAKHLKNVNWRNGGDLKPYVVFYVD----PAYRLATQSDDSGSTRPVWNERFTLPITHS----------   81 (308)
Q Consensus        16 ~~~~~L~VtIisAk~L~~~~~~~~~~~dPYv~v~l~----~~~k~kT~v~k~gt~nP~WnE~f~f~l~~~----------   81 (308)
                      .....|+++|+++.++...+-- . ..|-|+++.+-    ...+.+|.++++ +.+|.|+|.|.+++...          
T Consensus       364 l~d~elel~ivrg~~~pvp~gp-~-hld~fvr~efpl~nD~~qk~kt~vik~-t~SPdfde~fklni~rg~~~nr~fqR~  440 (523)
T KOG3837|consen  364 LKDQELELAIVRGQKNPVPGGP-M-HLDQFVRLEFPLENDSRQKLKTDVIKV-TPSPDFDEDFKLNIRRGPGLNREFQRR  440 (523)
T ss_pred             cchhHhHHHHhhcccCCCCCCc-h-hHHhhhcccccccccccccCccceeeC-CCCCCcccceeeeccCCCcccHHHHHH
Confidence            3456788999999888655432 1 47889888762    346889999998 99999999999998762          


Q ss_pred             CCCceEEEEEEeccCCCCCCceeeeEEEeCcccccCCCCCCCceeEEEEEeCCCCCCccEEEEEEEEccC
Q 021710           82 VRESVLTLEIFHSKLSETPKPLVGSVKFPLAHLVDSDSSEPTQYVRKLEVLRPSGRPQGKIRVKLVLNGR  151 (308)
Q Consensus        82 ~~~~~L~l~V~d~~~~~~~d~lLG~~~ipL~~L~~~~~~~~~~~~~~~~L~~~sg~~~G~L~v~v~~~~~  151 (308)
                      .....++|+|||+......|.|+|++.|.|..|.....+     ...++|++-..-..|+|.|+|++++.
T Consensus       441 fkr~g~kfeifhkggf~rSdkl~gt~nikle~Len~cei-----~e~~~l~DGRK~vGGkLevKvRiR~P  505 (523)
T KOG3837|consen  441 FKRLGKKFEIFHKGGFNRSDKLTGTGNIKLEILENMCEI-----CEYLPLKDGRKAVGGKLEVKVRIRQP  505 (523)
T ss_pred             HHhcCeeEEEeeccccccccceeceeeeeehhhhcccch-----hhceeccccccccCCeeEEEEEEecc
Confidence            123468999999886667899999999999998776544     36788875444458999999999874

>KOG1328 consensus Synaptic vesicle protein BAIAP3, involved in vesicle priming/regulation [Intracellular trafficking, secretion, and vesicular transport; Signal transduction mechanisms]

Probab=98.53  E-value=3.4e-08  Score=99.23  Aligned_cols=94  Identities=16%  Similarity=0.303  Sum_probs=81.0

Q ss_pred             ccEEEEEEEEeecCCCCCCCCCCCCCcEEEEEEcCC------ceEEEEeecCCCCCCccccEEEEeeeCC---CCCceEE
Q 021710           18 THDLEITIICAKHLKNVNWRNGGDLKPYVVFYVDPA------YRLATQSDDSGSTRPVWNERFTLPITHS---VRESVLT   88 (308)
Q Consensus        18 ~~~L~VtIisAk~L~~~~~~~~~~~dPYv~v~l~~~------~k~kT~v~k~gt~nP~WnE~f~f~l~~~---~~~~~L~   88 (308)
                      ...|.|.|+-|+++...+..+.  +||||+|.+.+.      ..++|+|++. |+||+|+|+|.|.|+.+   -+...|.
T Consensus       946 ~q~L~veVlhA~diipLD~NGl--SDPFVviEl~P~~~fp~v~~q~T~V~~r-tLnPVfDE~FeFsVp~e~c~te~Am~~ 1022 (1103)
T KOG1328|consen  946 AQTLVVEVLHAKDIIPLDSNGL--SDPFVVIELIPKFRFPAVPVQKTKVVSR-TLNPVFDETFEFSVPPEPCSTETAMLH 1022 (1103)
T ss_pred             ccchhhhhhccccccccCCCCC--CCCeEEEEeccccccccchhhhhhhhhc-cccchhhhheeeecCccccccccceEE
Confidence            3678889999999998887765  999999999873      4789999999 99999999999999853   2466899


Q ss_pred             EEEEeccCCCCCCceeeeEEEeCcccc
Q 021710           89 LEIFHSKLSETPKPLVGSVKFPLAHLV  115 (308)
Q Consensus        89 l~V~d~~~~~~~d~lLG~~~ipL~~L~  115 (308)
                      |+|+|+|- ...++|-|++.+.|.++-
T Consensus      1023 FTVMDHD~-L~sNDFaGEA~L~Lg~vp 1048 (1103)
T KOG1328|consen 1023 FTVMDHDY-LRSNDFAGEAFLELGDVP 1048 (1103)
T ss_pred             EEeeccce-ecccccchHHHHhhCCCC
Confidence            99999994 578899999999998874

>KOG2059 consensus Ras GTPase-activating protein [Signal transduction mechanisms]

Probab=98.49  E-value=1.9e-07  Score=93.77  Aligned_cols=111  Identities=14%  Similarity=0.233  Sum_probs=83.7

Q ss_pred             CCCcEEEEEEcCC---ceEEEEeecCCCCCCccccEEEEeeeCCC--------------CCceEEEEEEeccCCCCCCce
Q 021710           41 DLKPYVVFYVDPA---YRLATQSDDSGSTRPVWNERFTLPITHSV--------------RESVLTLEIFHSKLSETPKPL  103 (308)
Q Consensus        41 ~~dPYv~v~l~~~---~k~kT~v~k~gt~nP~WnE~f~f~l~~~~--------------~~~~L~l~V~d~~~~~~~d~l  103 (308)
                      .+|||+++.....   ...+|++.++ +.+|.|||.|.|.+....              ....|++++|++......+.|
T Consensus       150 ~~dp~~~v~~~g~~~~~~~~T~~~kk-t~~p~~~Ev~~f~~~~~~~~s~ks~~~~~~e~~~l~irv~lW~~~~~~~~~~F  228 (800)
T KOG2059|consen  150 QCDPFARVTLCGPSKLKEKKTKVKKK-TTNPQFDEVFYFEVTREESYSKKSLFMPEEEDDMLEIRVDLWNDLNLVINDVF  228 (800)
T ss_pred             CCCcceEEeecccchhhccccceeee-ccCcchhhheeeeeccccccccchhcCcccCCceeeEEEeeccchhhhhhhhh
Confidence            4999999887542   2368999999 999999999999987530              134688999995534567999


Q ss_pred             eeeEEEeCcccccCCCCCCCceeEEEEEeCC-CC------CCccEEEEEEEEccCCCCCCC
Q 021710          104 VGSVKFPLAHLVDSDSSEPTQYVRKLEVLRP-SG------RPQGKIRVKLVLNGRPLPPPS  157 (308)
Q Consensus       104 LG~~~ipL~~L~~~~~~~~~~~~~~~~L~~~-sg------~~~G~L~v~v~~~~~~~~pP~  157 (308)
                      +|++++++..+....     ....||.|... +|      ...|.|++++.+++.+..+.+
T Consensus       229 lGevrv~v~~~~~~s-----~p~~W~~Lqp~~~g~~~~~~~~lGslrl~v~y~~D~Vlps~  284 (800)
T KOG2059|consen  229 LGEVRVPVDVLRQKS-----SPAAWYYLQPRPNGEKSSDGGDLGSLRLNVTYTEDHVLPSQ  284 (800)
T ss_pred             ceeEEeehhhhhhcc-----CccceEEEecCCCcccCCCCCCccceeeeEEeeeceeccHh
Confidence            999999999987322     23589999742 22      237999999999998765444

>KOG1011 consensus Neurotransmitter release regulator, UNC-13 [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]

Probab=98.33  E-value=1.6e-06  Score=86.53  Aligned_cols=106  Identities=18%  Similarity=0.278  Sum_probs=85.3

Q ss_pred             ccEEEEEEEEeecCCCCCCCCCCCCCcEEEEEEc------CCceEEEEeecCCCCCCccccEEEEeeeCC--CCCceEEE
Q 021710           18 THDLEITIICAKHLKNVNWRNGGDLKPYVVFYVD------PAYRLATQSDDSGSTRPVWNERFTLPITHS--VRESVLTL   89 (308)
Q Consensus        18 ~~~L~VtIisAk~L~~~~~~~~~~~dPYv~v~l~------~~~k~kT~v~k~gt~nP~WnE~f~f~l~~~--~~~~~L~l   89 (308)
                      ...++|+|+.|.+|+....   +...|||.|.+-      +++++.|++..+ +..|.+||+|.|.+.++  .+.-+|.|
T Consensus      1124 ehkvtvkvvaandlkwqts---gmFrPFVEV~ivGP~lsDKKRK~~TKtKsn-nWaPKyNEtF~f~Lg~e~~Pe~YEL~~ 1199 (1283)
T KOG1011|consen 1124 EHKVTVKVVAANDLKWQTS---GMFRPFVEVHIVGPHLSDKKRKFSTKTKSN-NWAPKYNETFHFFLGNEGGPEHYELQF 1199 (1283)
T ss_pred             cceEEEEEEecccccchhc---cccccceEEEEecCcccchhhhccccccCC-CcCcccCceeEEEeccCCCCceEEEEE
Confidence            3678899999999986432   258999999984      257888888877 89999999999998764  34567899


Q ss_pred             EEEeccCCCCCCceeeeEEEeCcccccCCCCCCCceeEEEEEeC
Q 021710           90 EIFHSKLSETPKPLVGSVKFPLAHLVDSDSSEPTQYVRKLEVLR  133 (308)
Q Consensus        90 ~V~d~~~~~~~d~lLG~~~ipL~~L~~~~~~~~~~~~~~~~L~~  133 (308)
                      .|.|..+ ...|+.||.+.++|+++...++     .-.|++|.+
T Consensus      1200 ~VKDYCF-AReDRvvGl~VlqL~~va~kGS-----~a~W~pLgr 1237 (1283)
T KOG1011|consen 1200 CVKDYCF-AREDRVVGLAVLQLRSVADKGS-----CACWVPLGR 1237 (1283)
T ss_pred             eehhhee-ecccceeeeeeeehhhHhhcCc-----eeEeeeccc
Confidence            9999884 5678999999999999987643     358999965

>KOG0905 consensus Phosphoinositide 3-kinase [Signal transduction mechanisms]

Probab=98.28  E-value=6.5e-07  Score=94.10  Aligned_cols=107  Identities=20%  Similarity=0.256  Sum_probs=83.9

Q ss_pred             cccEEEEEEEEeecCCCCCCCCCCCCCcEEEEEEcC----CceEEEEeecCCCCCCccccEEEEe-eeCC-CCCceEEEE
Q 021710           17 ITHDLEITIICAKHLKNVNWRNGGDLKPYVVFYVDP----AYRLATQSDDSGSTRPVWNERFTLP-ITHS-VRESVLTLE   90 (308)
Q Consensus        17 ~~~~L~VtIisAk~L~~~~~~~~~~~dPYv~v~l~~----~~k~kT~v~k~gt~nP~WnE~f~f~-l~~~-~~~~~L~l~   90 (308)
                      ..++|.|-|.-+|+|....- +. .+||||+.++.+    ..|.||+|+++ |.||+|||.+... +... +...+|.+.
T Consensus      1522 ~~~~LtImV~H~K~L~~Lqd-g~-~P~pyVK~YLlPdp~k~sKRKTKvvrk-t~~PTfnE~LvY~g~p~~~l~qReLQ~s 1598 (1639)
T KOG0905|consen 1522 NNGTLTIMVMHAKGLALLQD-GQ-DPDPYVKTYLLPDPRKTSKRKTKVVRK-TRNPTFNEMLVYDGFPKEILQQRELQVS 1598 (1639)
T ss_pred             cCceEEEEhhhhcccccccC-CC-CCCcceeEEecCCchHhhhhhhccccc-cCCCchhhheeecCCchhhhhhheeeee
Confidence            35789999999999943321 22 699999999976    35899999999 9999999988776 3322 356789999


Q ss_pred             EEeccCCCCCCceeeeEEEeCcccccCCCCCCCceeEEEEEe
Q 021710           91 IFHSKLSETPKPLVGSVKFPLAHLVDSDSSEPTQYVRKLEVL  132 (308)
Q Consensus        91 V~d~~~~~~~d~lLG~~~ipL~~L~~~~~~~~~~~~~~~~L~  132 (308)
                      ||.... ...+.|+|.+.|+|.++....     ....||.|.
T Consensus      1599 Vls~~~-~~en~~lg~v~i~L~~~~l~k-----E~~~Wy~lg 1634 (1639)
T KOG0905|consen 1599 VLSNGG-LLENVFLGGVNIPLLKVDLLK-----ESVGWYNLG 1634 (1639)
T ss_pred             eecccc-eeeeeeeeeeecchhhcchhh-----hhcceeecc
Confidence            999873 567889999999999986543     235899985

>KOG1013 consensus Synaptic vesicle protein rabphilin-3A [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.14  E-value=3.3e-07  Score=85.19  Aligned_cols=128  Identities=22%  Similarity=0.267  Sum_probs=94.4

Q ss_pred             cccEEEEEEEEeecCCCCCCCCCCCCCcEEEEEEcC----CceEEEEeecCCCCCCccccEEEEee--eCCCCCceEEEE
Q 021710           17 ITHDLEITIICAKHLKNVNWRNGGDLKPYVVFYVDP----AYRLATQSDDSGSTRPVWNERFTLPI--THSVRESVLTLE   90 (308)
Q Consensus        17 ~~~~L~VtIisAk~L~~~~~~~~~~~dPYv~v~l~~----~~k~kT~v~k~gt~nP~WnE~f~f~l--~~~~~~~~L~l~   90 (308)
                      .+..+.++|..|++|+..+..+.  .|||+++.+.+    ..+.+|++..+ +.||+|+|+.....  ........+.+.
T Consensus        91 ~~~~~~~tl~~a~~lk~~~~~~~--~d~~~~~~llpga~kl~slr~~t~~n-~lN~~w~etev~~~i~~~~~~~K~~Rk~  167 (362)
T KOG1013|consen   91 ESRMLDTTLDRAKGLKPMDINGL--ADPYVKLHLLPGAGKLNSLRTKTTRN-TLNPEWNETEVYEGITDDDTHLKVLRKV  167 (362)
T ss_pred             hhhhcceeechhcccchhhhhhh--cchHHhhhcccchhhhhhhhHHhhcc-CcCcceeccceecccccchhhhhhhhee
Confidence            45789999999999999988765  99999999976    24678888887 99999999866543  333445678888


Q ss_pred             EEeccCCCCCCceeeeEEEeCcccccCCCCCCCceeEEEEEeCC-------CCCCccEEEEEEEEccC
Q 021710           91 IFHSKLSETPKPLVGSVKFPLAHLVDSDSSEPTQYVRKLEVLRP-------SGRPQGKIRVKLVLNGR  151 (308)
Q Consensus        91 V~d~~~~~~~d~lLG~~~ipL~~L~~~~~~~~~~~~~~~~L~~~-------sg~~~G~L~v~v~~~~~  151 (308)
                      |+|.+ ...+.+++|+.+|+|..|......   ....||.-..+       ..+.+|.|.+++.+...
T Consensus       168 vcdn~-~~~~~~sqGq~r~~lkKl~p~q~k---~f~~cl~~~lp~~rad~~~~E~rg~i~isl~~~s~  231 (362)
T KOG1013|consen  168 VCDND-KKTHNESQGQSRVSLKKLKPLQRK---SFNICLEKSLPSERADRDEDEERGAILISLAYSST  231 (362)
T ss_pred             eccCc-ccccccCcccchhhhhccChhhcc---hhhhhhhccCCcccccccchhhccceeeeeccCcC
Confidence            99987 466889999999999888654332   22233333222       22458999999888664

>cd08684 C2A_Tac2-N C2 domain first repeat found in Tac2-N (Tandem C2 protein in Nucleus)

Probab=97.94  E-value=7.5e-06  Score=62.60  Aligned_cols=91  Identities=16%  Similarity=0.225  Sum_probs=68.9

Q ss_pred             EEEEEEeecCCCCCCCCCCCCCcEEE--EEEcCCceEEEEeecCCCCCCccccEEEEeeeC-CCCCceEEEEEEeccCCC
Q 021710           22 EITIICAKHLKNVNWRNGGDLKPYVV--FYVDPAYRLATQSDDSGSTRPVWNERFTLPITH-SVRESVLTLEIFHSKLSE   98 (308)
Q Consensus        22 ~VtIisAk~L~~~~~~~~~~~dPYv~--v~l~~~~k~kT~v~k~gt~nP~WnE~f~f~l~~-~~~~~~L~l~V~d~~~~~   98 (308)
                      -|||+.+++|...+..+. ...-|++  +.+.+...+||.+.+. ..||+++|+|.|.+.. .+.+..|.|.|+..-   
T Consensus         2 witv~~c~d~s~~~~~~e-~~~i~ikg~~tl~kpv~~KsS~rrg-s~d~~f~ETFVFqi~l~qL~~V~L~fsv~~~~---   76 (103)
T cd08684           2 WITVLKCKDLSWPSSCGE-NPTIYIKGILTLPKPVHFKSSAKEG-SNDIEFMETFVFAIKLQNLQTVRLVFKIQTQT---   76 (103)
T ss_pred             EEEEEEecccccccccCc-CCeeEEEEEEecCCCccccchhhcC-CCChhHHHHHHHHHHHhhccceEEEEEeeccC---
Confidence            589999999987765553 3555665  4444445677777665 9999999999999764 356778999999843   


Q ss_pred             CCCceeeeEEEeCcccccC
Q 021710           99 TPKPLVGSVKFPLAHLVDS  117 (308)
Q Consensus        99 ~~d~lLG~~~ipL~~L~~~  117 (308)
                      .+++.||.+.+.|+++-.+
T Consensus        77 ~RKe~iG~~sL~l~s~gee   95 (103)
T cd08684          77 PRKRTIGECSLSLRTLSTQ   95 (103)
T ss_pred             CccceeeEEEeecccCCHH
Confidence            4788999999999887553

Tac2-N contains two C2 domains and a short C-terminus including a WHXL motif, which are key in stabilizing transport vesicles to the plasma membrane by binding to a plasma membrane. However unlike the usual carboxyl-terminal-type (C-type) tandem C2 proteins, it lacks a transmembrane domain, a Slp-homology domain, and a Munc13-1-interacting domain. Homology search analysis indicate that no known protein motifs are located in its N-terminus, making Tac2-N a novel class of Ca2+-independent, C-type tandem C2 proteins. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphos

>KOG1013 consensus Synaptic vesicle protein rabphilin-3A [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.85  E-value=2.3e-05  Score=73.14  Aligned_cols=88  Identities=22%  Similarity=0.327  Sum_probs=72.8

Q ss_pred             ccEEEEEEEEeecCCCCCCCCCCCCCcEEEEEEcC----CceEEEEeecCCCCCCccccEEEEeeeCC-CCCceEEEEEE
Q 021710           18 THDLEITIICAKHLKNVNWRNGGDLKPYVVFYVDP----AYRLATQSDDSGSTRPVWNERFTLPITHS-VRESVLTLEIF   92 (308)
Q Consensus        18 ~~~L~VtIisAk~L~~~~~~~~~~~dPYv~v~l~~----~~k~kT~v~k~gt~nP~WnE~f~f~l~~~-~~~~~L~l~V~   92 (308)
                      ...|.|+|+.+.+|...+..+.  +||||.+++.+    ..+++|.+.|+ +.+|+||++|.|.+... +....+.|.||
T Consensus       232 ~~~l~vt~iRc~~l~ssDsng~--sDpyvS~~l~pdv~~~fkkKt~~~K~-t~~p~fd~~~~~~i~pgdLa~~kv~lsvg  308 (362)
T KOG1013|consen  232 TPGLIVTIIRCSHLASSDSNGY--SDPYVSQRLSPDVGKKFKKKTQQKKK-TLNPEFDEEFFYDIGPGDLAYKKVALSVG  308 (362)
T ss_pred             CCceEEEEEEeeeeeccccCCC--CCccceeecCCCcchhhcccCcchhc-cCCccccccccccCCccchhcceEEEeec
Confidence            4678999999999998887765  99999999875    35889999998 99999999999999874 56678999999


Q ss_pred             eccCCCCCCceeeeEEE
Q 021710           93 HSKLSETPKPLVGSVKF  109 (308)
Q Consensus        93 d~~~~~~~d~lLG~~~i  109 (308)
                      |.+. ....+++|-+..
T Consensus       309 d~~~-G~s~d~~GG~~~  324 (362)
T KOG1013|consen  309 DYDI-GKSNDSIGGSML  324 (362)
T ss_pred             ccCC-CcCccCCCcccc
Confidence            9984 336677776544

>KOG2060 consensus Rab3 effector RIM1 and related proteins, contain PDZ and C2 domains [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.83  E-value=2.1e-05  Score=74.45  Aligned_cols=109  Identities=19%  Similarity=0.222  Sum_probs=85.0

Q ss_pred             ccEEEEEEEEeecCCCCCCCCCCCCCcEEEEEEcCC----ceEEEEeecCCCCCCccccEEEEeeeCCCCCceEEEEEEe
Q 021710           18 THDLEITIICAKHLKNVNWRNGGDLKPYVVFYVDPA----YRLATQSDDSGSTRPVWNERFTLPITHSVRESVLTLEIFH   93 (308)
Q Consensus        18 ~~~L~VtIisAk~L~~~~~~~~~~~dPYv~v~l~~~----~k~kT~v~k~gt~nP~WnE~f~f~l~~~~~~~~L~l~V~d   93 (308)
                      .+.|+|.|+.|++|..+.-... .++|||+|++...    .+.+|+...+ ++.|.+.+.+.|.-..  ....|.++||.
T Consensus       268 ~g~l~vEii~ar~l~~k~~~k~-~~apyVkVYlL~~g~c~ak~ktk~A~k-T~~plyqq~l~f~~sp--~~k~Lq~tv~g  343 (405)
T KOG2060|consen  268 KGDLEVEIIRARGLVVKPGSKS-LPAPYVKVYLLENGFCIAKKKTKSARK-TLDPLYQQQLSFDQSP--PGKYLQGTVWG  343 (405)
T ss_pred             cCceeEEEEecccccccCCccc-ccCceeEEEEcCCCceecccccccccc-cCchhhhhhhhhccCC--CccEEEEEEec
Confidence            4899999999999976654443 5899999998652    4678888888 7777666677777655  57889999998


Q ss_pred             ccCCCCCCceeeeEEEeCcccccCCCCCCCceeEEEEEeCC
Q 021710           94 SKLSETPKPLVGSVKFPLAHLVDSDSSEPTQYVRKLEVLRP  134 (308)
Q Consensus        94 ~~~~~~~d~lLG~~~ipL~~L~~~~~~~~~~~~~~~~L~~~  134 (308)
                      .-.+...+.|+|.+.|-|.+|.....    ....||+|...
T Consensus       344 dygRmd~k~fmg~aqi~l~eL~ls~~----~~igwyKlfgs  380 (405)
T KOG2060|consen  344 DYGRMDHKSFMGVAQIMLDELNLSSS----PVIGWYKLFGS  380 (405)
T ss_pred             cccccchHHHhhHHHHHhhhhccccc----cceeeeeccCC
Confidence            65566788999999999999876542    34689999754

>KOG1265 consensus Phospholipase C [Lipid transport and metabolism]

Probab=97.81  E-value=0.0001  Score=76.15  Aligned_cols=118  Identities=19%  Similarity=0.332  Sum_probs=87.4

Q ss_pred             CCCCcccEEEEEEEEeecCCCCCCCCCCCCCcEEEEEEcC------CceEEEEeecCCCCCCccccE-EEEe-eeCCCCC
Q 021710           13 MSSPITHDLEITIICAKHLKNVNWRNGGDLKPYVVFYVDP------AYRLATQSDDSGSTRPVWNER-FTLP-ITHSVRE   84 (308)
Q Consensus        13 ~~~~~~~~L~VtIisAk~L~~~~~~~~~~~dPYv~v~l~~------~~k~kT~v~k~gt~nP~WnE~-f~f~-l~~~~~~   84 (308)
                      +......+|.|+||++.-|..+.      ...||.|.+-+      ...++|+++..|+.||+|+|. |.|. |.-+ +-
T Consensus       697 VdgvIA~t~sV~VISgqFLSdrk------vgtyVEVdmfgLP~Dt~Rk~~rtrt~~~n~~npvy~eepfvF~KVvLp-eL  769 (1189)
T KOG1265|consen  697 VDGVIAATLSVTVISGQFLSDRK------VGTYVEVDMFGLPTDTIRKEFRTRTVQGNSFNPVYEEEPFVFRKVVLP-EL  769 (1189)
T ss_pred             ccceEEeeEEEEEEeeeeccccc------cCceEEEEecCCCchhhhhhhhhccccCCCCCcccccCCcccceeccc-ch
Confidence            44445689999999999887653      66899999843      257899999999999999985 7886 2211 35


Q ss_pred             ceEEEEEEeccCCCCCCceeeeEEEeCcccccCCCCCCCceeEEEEEeCCCCCCcc--EEEEEEEEcc
Q 021710           85 SVLTLEIFHSKLSETPKPLVGSVKFPLAHLVDSDSSEPTQYVRKLEVLRPSGRPQG--KIRVKLVLNG  150 (308)
Q Consensus        85 ~~L~l~V~d~~~~~~~d~lLG~~~ipL~~L~~~~~~~~~~~~~~~~L~~~sg~~~G--~L~v~v~~~~  150 (308)
                      ..|.|.|++++     ..|||.=.+||+.|..+        .+.+.|++..+.+.+  .|.|.|.+..
T Consensus       770 A~lRiavyeEg-----gK~ig~RIlpvd~l~~G--------Yrhv~LRse~Nqpl~lp~Lfv~i~~kd  824 (1189)
T KOG1265|consen  770 ASLRIAVYEEG-----GKFIGQRILPVDGLNAG--------YRHVCLRSESNQPLTLPALFVYIVLKD  824 (1189)
T ss_pred             hheeeeeeccC-----CceeeeeccchhcccCc--------ceeEEecCCCCCccccceeEEEEEeec
Confidence            67999999987     35999999999998764        255777777777644  4555555543

>PLN02964 phosphatidylserine decarboxylase

Probab=97.53  E-value=0.00016  Score=74.15  Aligned_cols=87  Identities=18%  Similarity=0.343  Sum_probs=68.3

Q ss_pred             ccEEEEEEEEeecCCCCCCCCCCCCCcE-EEEEEcCCceEEEEeecCCCCCCccccEEEEeeeCCCCCceEEEEEEeccC
Q 021710           18 THDLEITIICAKHLKNVNWRNGGDLKPY-VVFYVDPAYRLATQSDDSGSTRPVWNERFTLPITHSVRESVLTLEIFHSKL   96 (308)
Q Consensus        18 ~~~L~VtIisAk~L~~~~~~~~~~~dPY-v~v~l~~~~k~kT~v~k~gt~nP~WnE~f~f~l~~~~~~~~L~l~V~d~~~   96 (308)
                      .+.+.|+|++|+ +   +     ..|+| +.+.++ .+.+||.+.++ |.||+||+...|.|... +.....|.|||++ 
T Consensus        53 ~~~~~~~~~~~~-~---~-----~~~~~~~~~~~g-~~~f~t~~~~~-~~~p~~~~~~~~~~~~~-~~~~~~~~~~~~~-  119 (644)
T PLN02964         53 SGIALLTLVGAE-M---K-----FKDKWLACVSFG-EQTFRTETSDS-TDKPVWNSEKKLLLEKN-GPHLARISVFETN-  119 (644)
T ss_pred             cCeEEEEeehhh-h---c-----cCCcEEEEEEec-ceeeeeccccc-cCCcccchhhceEeccC-CcceEEEEEEecC-
Confidence            588999999997 2   1     13555 556665 48999999999 99999999988888764 3344699999998 


Q ss_pred             CCCCCceeeeEEEeCcccccC
Q 021710           97 SETPKPLVGSVKFPLAHLVDS  117 (308)
Q Consensus        97 ~~~~d~lLG~~~ipL~~L~~~  117 (308)
                      +...+++++.+++.|.++...
T Consensus       120 ~~s~n~lv~~~e~~~t~f~~k  140 (644)
T PLN02964        120 RLSKNTLVGYCELDLFDFVTQ  140 (644)
T ss_pred             CCCHHHhhhheeecHhhccHH
Confidence            577899999999988766543

>KOG1326 consensus Membrane-associated protein FER-1 and related ferlins, contain multiple C2 domains [Cell wall/membrane/envelope biogenesis]

Probab=97.53  E-value=0.0001  Score=77.09  Aligned_cols=91  Identities=18%  Similarity=0.246  Sum_probs=73.8

Q ss_pred             ccEEEEEEEEeecCCCCCCCCCCCCCcEEEEEEcCCc-eEEEEeecCCCCCCccccEEEEeeeCCCCCceEEEEEEeccC
Q 021710           18 THDLEITIICAKHLKNVNWRNGGDLKPYVVFYVDPAY-RLATQSDDSGSTRPVWNERFTLPITHSVRESVLTLEIFHSKL   96 (308)
Q Consensus        18 ~~~L~VtIisAk~L~~~~~~~~~~~dPYv~v~l~~~~-k~kT~v~k~gt~nP~WnE~f~f~l~~~~~~~~L~l~V~d~~~   96 (308)
                      ...++|.|++|.+|...|..+  ..|||+++.++.+. .-++.-+.+ ++||++.+-|.+.+.-. ....|+++|||+| 
T Consensus       612 ~~LvrVyvv~A~~L~p~D~ng--~adpYv~l~lGk~~~~d~~~yip~-tlnPVfgkmfel~~~lp-~ek~l~v~vyd~D-  686 (1105)
T KOG1326|consen  612 KCLVRVYVVEAFSLQPSDGNG--DADPYVKLLLGKKRTLDRAHYIPN-TLNPVFGKMFELECLLP-FEKDLIVEVYDHD-  686 (1105)
T ss_pred             eeeEEEEEEEeeeccccCCCC--CcCceeeeeeccchhhhhhhcCcC-CCCcHHHHHHHhhcccc-hhhcceeEEEEee-
Confidence            467889999999999998776  49999999998632 345666676 99999999887776543 3567999999999 


Q ss_pred             CCCCCceeeeEEEeCcc
Q 021710           97 SETPKPLVGSVKFPLAH  113 (308)
Q Consensus        97 ~~~~d~lLG~~~ipL~~  113 (308)
                      ...+|+.||+..+.|+.
T Consensus       687 ~~~~d~~iget~iDLEn  703 (1105)
T KOG1326|consen  687 LEAQDEKIGETTIDLEN  703 (1105)
T ss_pred             cccccchhhceehhhhh
Confidence            46789999999998876

>PF10358 NT-C2: N-terminal C2 in EEIG1 and EHBP1 proteins; InterPro: IPR019448 This entry represents the N-terminal 150 residues of a family of conserved proteins which are induced by oestrogen []

Probab=97.52  E-value=0.0045  Score=51.21  Aligned_cols=124  Identities=18%  Similarity=0.300  Sum_probs=82.7

Q ss_pred             cccEEEEEEEEeecCCCCCCCCCCCCCcEEEEEEcCCc--eEEEEeecCCCCCCccccEEEEeeeC-------CCCCceE
Q 021710           17 ITHDLEITIICAKHLKNVNWRNGGDLKPYVVFYVDPAY--RLATQSDDSGSTRPVWNERFTLPITH-------SVRESVL   87 (308)
Q Consensus        17 ~~~~L~VtIisAk~L~~~~~~~~~~~dPYv~v~l~~~~--k~kT~v~k~gt~nP~WnE~f~f~l~~-------~~~~~~L   87 (308)
                      ....+.|+|++..+++..      ....+|+.......  ..+|......+..-.|||.|.|.+.-       .++...|
T Consensus         5 ~kf~~~l~i~~l~~~p~~------~~~v~v~wkr~~~~~~~~~t~~~~~~~~~v~w~e~~~~~~tl~~~~k~~~~~~K~~   78 (143)
T PF10358_consen    5 VKFQFDLTIHELENLPSS------NGKVFVKWKRGDKSKGSGTTSRANVKNGKVQWNEEFSFPCTLYRDKKSKEFQPKEL   78 (143)
T ss_pred             eeEEEEEEEEEeECcCCC------CCEEEEEEEECCCCccceeeeeeeccccEEEEeeEEEEEEEEEEcCCCCcEeeEEE
Confidence            356789999999988762      13445555444432  35555555446788999999887652       1355678


Q ss_pred             EEEEEeccCCCCCCceeeeEEEeCcccccCCCCCCCceeEEEEEeCCCCCCccEEEEEEEEccC
Q 021710           88 TLEIFHSKLSETPKPLVGSVKFPLAHLVDSDSSEPTQYVRKLEVLRPSGRPQGKIRVKLVLNGR  151 (308)
Q Consensus        88 ~l~V~d~~~~~~~d~lLG~~~ipL~~L~~~~~~~~~~~~~~~~L~~~sg~~~G~L~v~v~~~~~  151 (308)
                      .|.|+.... ......||++.|.|.++......   .....+.|... ....-.|.|+|.+...
T Consensus        79 ~~~v~~~~~-~~~k~~lG~~~inLaey~~~~~~---~~~~~~~l~~~-~~~~a~L~isi~~~~~  137 (143)
T PF10358_consen   79 KFSVFEVDG-SGKKKVLGKVSINLAEYANEDEE---PITVRLLLKKC-KKSNATLSISISLSEL  137 (143)
T ss_pred             EEEEEEecC-CCccceEEEEEEEHHHhhCcCCC---cEEEEEeCccC-CCCCcEEEEEEEEEEC
Confidence            899988741 22336999999999999875321   33466666543 3457789998888765

Proteins in this entry are usually annotated as Fam102A, Fam102B, or Eeig1 (early oestrogen-responsive gene product 1).

>cd08687 C2_PKN-like C2 domain in Protein kinase C-like (PKN) proteins

Probab=97.34  E-value=0.0015  Score=50.29  Aligned_cols=84  Identities=18%  Similarity=0.277  Sum_probs=64.5

Q ss_pred             CCcEEEEEEcCCceEEEEeecCCCCCCccccEEEEeeeCCCCCceEEEEEEeccCCCCCCceeeeEEEeCcccccCCCCC
Q 021710           42 LKPYVVFYVDPAYRLATQSDDSGSTRPVWNERFTLPITHSVRESVLTLEIFHSKLSETPKPLVGSVKFPLAHLVDSDSSE  121 (308)
Q Consensus        42 ~dPYv~v~l~~~~k~kT~v~k~gt~nP~WnE~f~f~l~~~~~~~~L~l~V~d~~~~~~~d~lLG~~~ipL~~L~~~~~~~  121 (308)
                      .+..+++.+|+..+..|.-...  .+-.||++|+|.+..   ..+|+|.|+=+|.    ..++|...+.|++...+    
T Consensus         9 ~eV~avLklDn~~VgqT~Wk~~--s~q~WDQ~Fti~LdR---sRELEI~VywrD~----RslCav~~lrLEd~~~~----   75 (98)
T cd08687           9 SEVSAVLKLDNTVVGQTQWKPK--SNQAWDQSFTLELER---SRELEIAVYWRDW----RSLCAVKFLKLEDERHE----   75 (98)
T ss_pred             cceEEEEEEcCeEEeecccccc--ccccccceeEEEeec---ccEEEEEEEEecc----hhhhhheeeEhhhhccc----
Confidence            5678899999877777777654  588999999999987   5789999998773    45888888889884331    


Q ss_pred             CCceeEEEEEeCCCCCCccEEEEEEEE
Q 021710          122 PTQYVRKLEVLRPSGRPQGKIRVKLVL  148 (308)
Q Consensus       122 ~~~~~~~~~L~~~sg~~~G~L~v~v~~  148 (308)
                           ..+.|     .++|.|...|+|
T Consensus        76 -----~~~~l-----epqg~l~~ev~f   92 (98)
T cd08687          76 -----VQLDM-----EPQLCLVAELTF   92 (98)
T ss_pred             -----ceecc-----ccccEEEEEEEe
Confidence                 22333     678888888887

PKN is a lipid-activated serine/threonine kinase. It is a member of the protein kinase C (PKC) superfamily, but lacks a C1 domain. There are at least 3 different isoforms of PKN (PRK1/PKNalpha/PAK1; PKNbeta, and PRK2/PAK2/PKNgamma). The C-terminal region contains the Ser/Thr type protein kinase domain, while the N-terminal region of PKN contains three antiparallel coiled-coil (ACC) finger domains which are relatively rich in charged residues and contain a leucine zipper-like sequence. These domains binds to the small GTPase RhoA. Following these domains is a C2-like domain. Its C-terminal part functions as an auto-inhibitory region. PKNs are not activated by classical PKC activators such as diacylglycerol, phorbol ester or Ca2+, but instead are activated by phospholipids and unsaturated fatty acids. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 struct

>PF12416 DUF3668: Cep120 protein; InterPro: IPR022136 This domain family is found in eukaryotes, and is typically between 75 and 114 amino acids in length

Probab=97.31  E-value=0.0038  Score=59.56  Aligned_cols=123  Identities=13%  Similarity=0.186  Sum_probs=93.9

Q ss_pred             EEEEEEEeecCCCCCCCCCCCCCcEEEEEEcCCceEEEEeecCCCCCCccccEEEEeeeCC------CCCceEEEEEEec
Q 021710           21 LEITIICAKHLKNVNWRNGGDLKPYVVFYVDPAYRLATQSDDSGSTRPVWNERFTLPITHS------VRESVLTLEIFHS   94 (308)
Q Consensus        21 L~VtIisAk~L~~~~~~~~~~~dPYv~v~l~~~~k~kT~v~k~gt~nP~WnE~f~f~l~~~------~~~~~L~l~V~d~   94 (308)
                      +.|.|++++++....     ...-.+...+++ ....|-.+.. +..|.||..+.|.++..      .....|+|++|..
T Consensus         2 ivl~i~egr~F~~~~-----~~~~vv~a~~ng-~~l~TDpv~~-~~~p~f~teL~WE~Dr~~l~~~r~~~tPiKl~c~a~   74 (340)
T PF12416_consen    2 IVLSILEGRNFPQRP-----RHPIVVEAKFNG-ESLETDPVPH-TESPQFNTELAWECDRKALKQHRLQRTPIKLQCFAV   74 (340)
T ss_pred             EEEEEecccCCCCCC-----CccEEEEEEeCC-ceeeecCCCC-CCCceeecceeeeccHHHHHHhhccCCceEEEEEEe
Confidence            678999999998662     255678888886 7888887777 88999999999998742      3556799999988


Q ss_pred             cCCCCCCceeeeEEEeCccc---ccCCCCCCCceeEEEEEeCCCCC---CccEEEEEEEEccCCC
Q 021710           95 KLSETPKPLVGSVKFPLAHL---VDSDSSEPTQYVRKLEVLRPSGR---PQGKIRVKLVLNGRPL  153 (308)
Q Consensus        95 ~~~~~~d~lLG~~~ipL~~L---~~~~~~~~~~~~~~~~L~~~sg~---~~G~L~v~v~~~~~~~  153 (308)
                      +......+.||.+.++|..+   ......   ....||+|+.-+.+   .+=+|.|.+.+.....
T Consensus        75 ~~~~~~re~iGyv~LdLRsa~~~~~~~~~---~~~~W~~LL~~~~~y~~~KPEl~l~l~ie~~~~  136 (340)
T PF12416_consen   75 DGSTGKRESIGYVVLDLRSAVVPQEKNQK---QKPKWYKLLSSSSKYKKHKPELLLSLSIEDDSK  136 (340)
T ss_pred             cCCCCcceeccEEEEEccccccccccccc---cCCCeeEccccccccccCCccEEEEEEEecccc
Confidence            74456788999999999998   332111   45799999876333   3668999999988743

>KOG1452 consensus Predicted Rho GTPase-activating protein [Signal transduction mechanisms]

Probab=97.26  E-value=0.00079  Score=62.69  Aligned_cols=119  Identities=18%  Similarity=0.157  Sum_probs=82.2

Q ss_pred             ccEEEEEEEEeecCCCCCCCCCCCCCcEEEEEEcCCceEEEEeecCCCCCCccccEEEEeeeCCCCCceEEEEEEeccCC
Q 021710           18 THDLEITIICAKHLKNVNWRNGGDLKPYVVFYVDPAYRLATQSDDSGSTRPVWNERFTLPITHSVRESVLTLEIFHSKLS   97 (308)
Q Consensus        18 ~~~L~VtIisAk~L~~~~~~~~~~~dPYv~v~l~~~~k~kT~v~k~gt~nP~WnE~f~f~l~~~~~~~~L~l~V~d~~~~   97 (308)
                      .++|.|.+..+++|+-.....+-+.+-||++.++...+.+|++... ...-.|.|.|.+++.+   ...|.+-|+.|.. 
T Consensus        50 tGiL~~H~~~GRGLr~~p~~kglt~~~ycVle~drqh~aRt~vrs~-~~~f~w~e~F~~Dvv~---~~vl~~lvySW~p-  124 (442)
T KOG1452|consen   50 TGILYFHAYNGRGLRMTPQQKGLTVCFYCVLEPDRQHPARTRVRSS-GPGFAWAEDFKHDVVN---IEVLHYLVYSWPP-  124 (442)
T ss_pred             cceEEEEEecccccccChhccCceeeeeeeeeecccCccccccccC-CCCccchhhceeeccc---ceeeeEEEeecCc-
Confidence            5889999999999975443221157899999999877788887765 7788999999999876   4678888999884 


Q ss_pred             CCCCceeeeEEEeCcccccCCCCCCCceeEEEEEeCCCCCCccEEEEEEEEcc
Q 021710           98 ETPKPLVGSVKFPLAHLVDSDSSEPTQYVRKLEVLRPSGRPQGKIRVKLVLNG  150 (308)
Q Consensus        98 ~~~d~lLG~~~ipL~~L~~~~~~~~~~~~~~~~L~~~sg~~~G~L~v~v~~~~  150 (308)
                      ..+++++=.-.|.+..+......    +...+.|     +++|.+-|++.+.+
T Consensus       125 q~RHKLC~~g~l~~~~v~rqspd----~~~Al~l-----ePrgq~~~r~~~~D  168 (442)
T KOG1452|consen  125 QRRHKLCHLGLLEAFVVDRQSPD----RVVALYL-----EPRGQPPLRLPLAD  168 (442)
T ss_pred             hhhccccccchhhhhhhhhcCCc----ceeeeec-----ccCCCCceecccCC
Confidence            45666654444555555443222    1222333     56777777777755

>PF11618 DUF3250: Protein of unknown function (DUF3250); InterPro: IPR021656 This family of proteins represents a protein with unknown function

Probab=96.91  E-value=0.0047  Score=49.32  Aligned_cols=98  Identities=14%  Similarity=0.184  Sum_probs=57.5

Q ss_pred             EEEEEEcCCceEEEEeecCCCCCCccccEEEEeeeCC------CCCceEEEEEEeccCCCCCCceeeeEEEeCcccccCC
Q 021710           45 YVVFYVDPAYRLATQSDDSGSTRPVWNERFTLPITHS------VRESVLTLEIFHSKLSETPKPLVGSVKFPLAHLVDSD  118 (308)
Q Consensus        45 Yv~v~l~~~~k~kT~v~k~gt~nP~WnE~f~f~l~~~------~~~~~L~l~V~d~~~~~~~d~lLG~~~ipL~~L~~~~  118 (308)
                      ||++.+-.-+.+.|.++.  +.+|.+|-+-.|.|...      +....|.|+++..-  ....+.||.++|++.++++..
T Consensus         2 Fct~dFydfEtq~Tpvv~--G~~p~y~fts~y~V~~d~~fl~YLq~~~~~lELhqa~--g~d~~tla~~~i~l~~ll~~~   77 (107)
T PF11618_consen    2 FCTYDFYDFETQTTPVVR--GLNPFYDFTSQYKVTMDDLFLHYLQTGSLTLELHQAL--GSDFETLAAGQISLRPLLESN   77 (107)
T ss_dssp             EEEE-STT---EE---EE--SSS----EEEEEEE--SHHHHHHHHH--EEEEEEEE---SS-EEEEEEEEE--SHHHH--
T ss_pred             EEEEEeeceeeeccccee--CCCccceeEEEEEEEcCHHHHHHhhcCCEEEEEEeec--cCCeEEEEEEEeechhhhcCC
Confidence            566666555778899887  48999999888887643      35668999998865  234789999999999999654


Q ss_pred             CCCCCceeEEEEEeCCCCCCccEEEEEEEEc
Q 021710          119 SSEPTQYVRKLEVLRPSGRPQGKIRVKLVLN  149 (308)
Q Consensus       119 ~~~~~~~~~~~~L~~~sg~~~G~L~v~v~~~  149 (308)
                      +.   .......|...++..-|.|.+.+++.
T Consensus        78 ~~---~i~~~~~l~g~~~~~~g~l~y~~rl~  105 (107)
T PF11618_consen   78 GE---RIHGSATLVGVSGEDFGTLEYWIRLR  105 (107)
T ss_dssp             S-----EEEEEEE-BSSS-TSEEEEEEEEEE
T ss_pred             Cc---eEEEEEEEeccCCCeEEEEEEEEEec
Confidence            42   34567788888888999999999886

It may be the C2 domain from KIAA1005 however this cannot be confirmed. ; PDB: 2YRB_A.

>PF15627 CEP76-C2: CEP76 C2 domain

Probab=96.88  E-value=0.02  Score=48.70  Aligned_cols=127  Identities=13%  Similarity=0.188  Sum_probs=86.0

Q ss_pred             ccEEEEEEEEeecCCCCCC-C-CCCCCCcEEEEEEc-CCceEEEEeecCCCCCCccccEEEEeeeCCC------------
Q 021710           18 THDLEITIICAKHLKNVNW-R-NGGDLKPYVVFYVD-PAYRLATQSDDSGSTRPVWNERFTLPITHSV------------   82 (308)
Q Consensus        18 ~~~L~VtIisAk~L~~~~~-~-~~~~~dPYv~v~l~-~~~k~kT~v~k~gt~nP~WnE~f~f~l~~~~------------   82 (308)
                      ...|.|.|..+|-...--. . +  ..+.-.++.+. ..++++|+.+.. +.+|.++|.|.|.+....            
T Consensus         8 ~~yL~l~vlgGkAFld~l~~~~~--~~~s~~~l~l~f~~QRF~S~~Vp~-~~eP~f~e~Flf~l~~~~~~~~~~~~~lls   84 (156)
T PF15627_consen    8 RRYLHLRVLGGKAFLDHLQEPEG--QVCSTFTLHLHFRGQRFRSKPVPC-ACEPDFNEEFLFELPRDSFGAGSTATTLLS   84 (156)
T ss_pred             ceEEEEEEeCchhHhhhhhccCC--CCceEEEEEEEecCceEecCCccc-ccCCCCCCcEEEEecccccccccchhHhhc
Confidence            4779999999875432111 0 1  24444444442 248999999998 999999999999998641            


Q ss_pred             CCceEEEEEEeccCCCCCCceeeeEEEeCcccccCCCCCCCceeEEEEEeCCCCC---CccEEEEEEEEccC
Q 021710           83 RESVLTLEIFHSKLSETPKPLVGSVKFPLAHLVDSDSSEPTQYVRKLEVLRPSGR---PQGKIRVKLVLNGR  151 (308)
Q Consensus        83 ~~~~L~l~V~d~~~~~~~d~lLG~~~ipL~~L~~~~~~~~~~~~~~~~L~~~sg~---~~G~L~v~v~~~~~  151 (308)
                      ....|++.|...+. .....++|+-.+.=..++.....   ......+|......   +.|.|.|++.+.+.
T Consensus        85 ~~~pihivli~~d~-~~~~~Lv~s~~ldWR~vL~s~~~---~~~~~vEL~G~~~e~kv~~GiL~l~lELlP~  152 (156)
T PF15627_consen   85 ISDPIHIVLIRTDP-SGETTLVGSHFLDWRKVLCSGNG---STSFTVELCGVGPESKVPVGILDLRLELLPN  152 (156)
T ss_pred             CCCceEEEEEEecC-CCceEeeeeceehHHHHhccCCC---ccceeEEEeccCCCCccceeEEEEEEEeecC
Confidence            12346777776663 34558999988888887765543   11355666654333   68999999999865

>KOG1326 consensus Membrane-associated protein FER-1 and related ferlins, contain multiple C2 domains [Cell wall/membrane/envelope biogenesis]

Probab=96.76  E-value=0.00042  Score=72.63  Aligned_cols=121  Identities=12%  Similarity=0.140  Sum_probs=90.0

Q ss_pred             cEEEEEEEEeecCCCCCCCCCCCCCcEEEEEEcCCceEEEEeecCCCCCCccccEEEEeeeC---C----C-CCceEEEE
Q 021710           19 HDLEITIICAKHLKNVNWRNGGDLKPYVVFYVDPAYRLATQSDDSGSTRPVWNERFTLPITH---S----V-RESVLTLE   90 (308)
Q Consensus        19 ~~L~VtIisAk~L~~~~~~~~~~~dPYv~v~l~~~~k~kT~v~k~gt~nP~WnE~f~f~l~~---~----~-~~~~L~l~   90 (308)
                      ..+++.|.+|+.|...+..+.  +|||+.+.+-. +.++|-++.. ++||+||++.+|.-.+   .    + .-..+.|+
T Consensus       206 ~~lR~yiyQar~L~a~dk~~~--sdp~a~v~f~~-qs~~T~~v~~-tl~ptwdq~~~f~~~ei~ge~~~~~~~ppi~v~e  281 (1105)
T KOG1326|consen  206 SPLRSYIYQARALGAPDKDDE--SDPDAAVEFCG-QSKETEVVPG-TLNPTWDQTIIFDEVEIYGEAHLVLKNPPIRVFE  281 (1105)
T ss_pred             hhhHHHHHHHHhhcCCCcccC--CCchhhhhccc-ccceeEeecC-cCCCCccceeeccceeecCccchhhcCCCeEEEE
Confidence            456777888999988887664  99999999875 7888999988 9999999999987322   1    1 12467899


Q ss_pred             EEeccCCCCCCceeeeEEEeCcccccCCCCCCCceeEEEEEeCCCCCCccEEEEEEEEccC
Q 021710           91 IFHSKLSETPKPLVGSVKFPLAHLVDSDSSEPTQYVRKLEVLRPSGRPQGKIRVKLVLNGR  151 (308)
Q Consensus        91 V~d~~~~~~~d~lLG~~~ipL~~L~~~~~~~~~~~~~~~~L~~~sg~~~G~L~v~v~~~~~  151 (308)
                      |+|.+ +.+.++|+|+..+...-....      ....|+++.+ .+...|.+.++..+...
T Consensus       282 ~yd~d-r~g~~ef~gr~~~~p~V~~~~------p~lkw~p~~r-g~~l~gd~l~a~eliq~  334 (1105)
T KOG1326|consen  282 VYDLD-RSGINEFKGRKKQRPYVMVQC------PALKWVPTMR-GAFLDGDVLIAAELIQI  334 (1105)
T ss_pred             eehhh-hhchHHhhcccccceEEEecC------CccceEEeec-ccccccchhHHHHHHhh
Confidence            99988 578999999876654444331      3468999975 45668887777766554

>cd08398 C2_PI3K_class_I_alpha C2 domain present in class I alpha phosphatidylinositol 3-kinases (PI3Ks)

Probab=96.73  E-value=0.029  Score=47.91  Aligned_cols=88  Identities=24%  Similarity=0.218  Sum_probs=58.3

Q ss_pred             cEEEEEEEEeecCCCCCCCCCCCCCcEEEEEEcC-Cc----eEEEEeecCCCCCCccccEEEEeeeC--CCCCceEEEEE
Q 021710           19 HDLEITIICAKHLKNVNWRNGGDLKPYVVFYVDP-AY----RLATQSDDSGSTRPVWNERFTLPITH--SVRESVLTLEI   91 (308)
Q Consensus        19 ~~L~VtIisAk~L~~~~~~~~~~~dPYv~v~l~~-~~----k~kT~v~k~gt~nP~WnE~f~f~l~~--~~~~~~L~l~V   91 (308)
                      ..++|+|+++.++.-.+     ..+-||.+.+-. .+    ...|+-+.  ..++.|||.++|+|.-  -..+..|.|.|
T Consensus         8 ~~~~v~i~~~~~~~~~~-----~~~l~V~v~l~~g~~~L~~pv~T~~v~--~~~~~WnEwL~fpI~i~dLPr~ArL~iti   80 (158)
T cd08398           8 SNLRIKILCATYVNVND-----IDKIYVRTGIYHGGEPLCDNVNTQRVP--CSNPRWNEWLDYDIYIPDLPRSARLCLSI   80 (158)
T ss_pred             CCeEEEEEeeccCCCCC-----cCeEEEEEEEEECCEEccCeeEecccC--CCCCccceeEEcccchhcCChhheEEEEE
Confidence            46889999999886432     367888876522 12    12333333  3579999999998753  23577899999


Q ss_pred             EeccCCC---CCCceeeeEEEeCcc
Q 021710           92 FHSKLSE---TPKPLVGSVKFPLAH  113 (308)
Q Consensus        92 ~d~~~~~---~~d~lLG~~~ipL~~  113 (308)
                      |+.....   .....||.+.++|-+
T Consensus        81 ~~~~~~~~~k~~~~~iG~~ni~LFd  105 (158)
T cd08398          81 CSVKGRKGAKEEHCPLAWGNINLFD  105 (158)
T ss_pred             EEEecccCCCCceEEEEEEEEEEEC
Confidence            9965211   123469999888766

PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. The members here are class I, alpha isoform PI3Ks and contain both a Ras-binding domain and a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a c

>KOG1327 consensus Copine [Signal transduction mechanisms]

Probab=96.53  E-value=0.0059  Score=60.93  Aligned_cols=87  Identities=20%  Similarity=0.382  Sum_probs=67.0

Q ss_pred             EEEeecCCCCCCCCCCCCCcEEEEEEc--C---CceEEEEeecCCCCCCccccEEEEeeeC---CCCCceEEEEEEeccC
Q 021710           25 IICAKHLKNVNWRNGGDLKPYVVFYVD--P---AYRLATQSDDSGSTRPVWNERFTLPITH---SVRESVLTLEIFHSKL   96 (308)
Q Consensus        25 IisAk~L~~~~~~~~~~~dPYv~v~l~--~---~~k~kT~v~k~gt~nP~WnE~f~f~l~~---~~~~~~L~l~V~d~~~   96 (308)
                      .++|++|.+++.+++  +|||..+.-.  .   ...++|.++++ +++|.|.+ |.+.+..   ...+..+.|+|||.+ 
T Consensus       142 ~~~~~~ld~kd~f~k--sd~~l~~~~~~~d~s~~~~~~tEv~~n-~l~p~w~~-~~i~~~~l~~~~~~~~~~i~~~d~~-  216 (529)
T KOG1327|consen  142 SFRAKNLDPKDFFSK--SDPYLEFYKRVDDGSTQMLYRTEVVKN-TLNPQWAP-FSISLQSLCSKDGNRPIQIECYDYD-  216 (529)
T ss_pred             eeeeeecCccccccc--CCcceEEEEecCCCceeeccccceecc-CCCCcccc-cccchhhhcccCCCCceEEEEeccC-
Confidence            466899999999886  9999887643  1   24789999998 99999965 4444332   124578899999998 


Q ss_pred             CCCCCceeeeEEEeCccccc
Q 021710           97 SETPKPLVGSVKFPLAHLVD  116 (308)
Q Consensus        97 ~~~~d~lLG~~~ipL~~L~~  116 (308)
                      ...++++||++..++.++..
T Consensus       217 ~~~~~~~ig~~~tt~~~~~~  236 (529)
T KOG1327|consen  217 SNGKHDLIGKFQTTLSELQE  236 (529)
T ss_pred             CCCCcCceeEecccHHHhcc
Confidence            46678999999999888864

>cd08693 C2_PI3K_class_I_beta_delta C2 domain present in class I beta and delta phosphatidylinositol 3-kinases (PI3Ks)

Probab=96.40  E-value=0.02  Score=49.56  Aligned_cols=72  Identities=21%  Similarity=0.274  Sum_probs=49.3

Q ss_pred             cEEEEEEEEeecCCCCCCCCCCCCCcEEEEEE--cCC---ceEEEEeecCCCCCCccccEEEEeeeC--CCCCceEEEEE
Q 021710           19 HDLEITIICAKHLKNVNWRNGGDLKPYVVFYV--DPA---YRLATQSDDSGSTRPVWNERFTLPITH--SVRESVLTLEI   91 (308)
Q Consensus        19 ~~L~VtIisAk~L~~~~~~~~~~~dPYv~v~l--~~~---~k~kT~v~k~gt~nP~WnE~f~f~l~~--~~~~~~L~l~V   91 (308)
                      ..++|+|+++.+|.-.+   . ..+-||.+.|  +..   ....|+.... ..++.|||.++|++.-  -.....|.|.|
T Consensus         8 ~~f~i~i~~~~~~~~~~---~-~~~l~V~~~lyhG~~~L~~p~~T~~~~~-~~~~~Wnewl~F~I~i~dLPr~ArLciti   82 (173)
T cd08693           8 EKFSITLHKISNLNAAE---R-TMKVGVQAGLFHGGESLCKTVKTSEVSG-KNDPVWNETLEFDINVCDLPRMARLCFAI   82 (173)
T ss_pred             CCEEEEEEEeccCccCC---C-CceEEEEEEEEECCEEccCceEccccCC-CCccccceeEEcccchhcCChhHeEEEEE
Confidence            46899999999987522   1 3667887655  221   2334554443 4679999999998653  23577899999


Q ss_pred             Eecc
Q 021710           92 FHSK   95 (308)
Q Consensus        92 ~d~~   95 (308)
                      |+..
T Consensus        83 ~~~~   86 (173)
T cd08693          83 YEVS   86 (173)
T ss_pred             EEec
Confidence            9865

PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. The members here are class I, beta and delta isoforms of PI3Ks and contain both a Ras-binding domain and a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Ty

>cd08380 C2_PI3K_like C2 domain present in phosphatidylinositol 3-kinases (PI3Ks)

Probab=96.21  E-value=0.027  Score=47.58  Aligned_cols=91  Identities=27%  Similarity=0.311  Sum_probs=59.1

Q ss_pred             cEEEEEEEEeecCCCCCCCCCCCCCcEEEEEE--cC---CceEEEEeecCCCCCCccccEEEEeeeC--CCCCceEEEEE
Q 021710           19 HDLEITIICAKHLKNVNWRNGGDLKPYVVFYV--DP---AYRLATQSDDSGSTRPVWNERFTLPITH--SVRESVLTLEI   91 (308)
Q Consensus        19 ~~L~VtIisAk~L~~~~~~~~~~~dPYv~v~l--~~---~~k~kT~v~k~gt~nP~WnE~f~f~l~~--~~~~~~L~l~V   91 (308)
                      ..++|+|....++...+. .  ..+-||++.+  +.   .....|+.... ..++.|||.++|++.-  -..+..|.|.|
T Consensus         8 ~~~~i~i~~~~~~~~~~~-~--~~~l~V~~~l~~g~~~l~~~~~t~~~~~-~~~~~Wne~l~F~i~~~~LP~~arL~itl   83 (156)
T cd08380           8 FNLRIKIHGITNINLLDS-E--DLKLYVRVQLYHGGEPLCPPQSTKKVPF-STSVTWNEWLTFDILISDLPREARLCLSI   83 (156)
T ss_pred             CCeEEEEEeeccccccCC-C--ceeEEEEEEEEECCEEccCceeccCCcC-CCCCcccceeEccchhhcCChhheEEEEE
Confidence            457788888877764111 1  3667777765  22   12334444433 4689999999998652  22577899999


Q ss_pred             EeccCCC-CCCceeeeEEEeCcc
Q 021710           92 FHSKLSE-TPKPLVGSVKFPLAH  113 (308)
Q Consensus        92 ~d~~~~~-~~d~lLG~~~ipL~~  113 (308)
                      |+.+... ..+..||.+.++|=+
T Consensus        84 ~~~~~~~~~~~~~iG~~~~~lFd  106 (156)
T cd08380          84 YAVSEPGSKKEVPLGWVNVPLFD  106 (156)
T ss_pred             EEEecCCCCcceEEEEEeEEeEc
Confidence            9976221 145789999888766

C2 domain present in all classes of PI3Ks. PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. In addition some PI3Ks contain a Ras-binding domain and/or a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular perm

>cd08694 C2_Dock-A C2 domains found in Dedicator Of CytoKinesis (Dock) class A proteins

Probab=96.13  E-value=0.044  Score=48.24  Aligned_cols=58  Identities=17%  Similarity=0.191  Sum_probs=41.7

Q ss_pred             ceEEEEeecCCCCCCccccEEEEeeeCC-CCCceEEEEEEeccCCCCCC---ceeeeEEEeCc
Q 021710           54 YRLATQSDDSGSTRPVWNERFTLPITHS-VRESVLTLEIFHSKLSETPK---PLVGSVKFPLA  112 (308)
Q Consensus        54 ~k~kT~v~k~gt~nP~WnE~f~f~l~~~-~~~~~L~l~V~d~~~~~~~d---~lLG~~~ipL~  112 (308)
                      ...+|-|... +.+|.|+|++.+.|+.. .....|.|+++|......+|   ..+|.+.+||-
T Consensus        53 se~~S~V~Yh-~~~P~W~EtIKl~lP~~~~~~~HL~FtfrH~S~~~~kd~~e~pfg~s~lpL~  114 (196)
T cd08694          53 DEYKSVIYYQ-VDKPKWFETFKVAIPIEDFKSSHLRFTFKHRSSNEAKDKSEKPFALSFVKLM  114 (196)
T ss_pred             eeEEEEEEee-cCCCCCceeEEEecChhhCCCeEEEEEEEeeccccccCCCCCceEEEEEeee
Confidence            4677888776 78999999999998864 35678999999865222222   45777777663

Dock-A is one of 4 classes of Dock family proteins. The members here include: Dock180/Dock1, Dock2, and Dock5. Most of these members have been shown to be GEFs specific for Rac. Dock5 has not been well characterized to date, but most likely also is a GEF specific for Rac. In addition to the C2 domain (AKA Dock homology region (DHR)-1, CED-5, Dock180, MBC-zizimin homology (CZH) 1) and the DHR-2 (AKA CZH2, or Docker), which all Dock180-related proteins have, Dock-A members contain a proline-rich region and a SH3 domain upstream of the C2 domain. DHR-2 has the catalytic activity for Rac and/or Cdc42, but is structurally unrelated to the DH domain. The C2/DHR-1 domains of Dock180 and Dock4 have been shown to bind phosphatidylinositol-3, 4, 5-triphosphate (PtdIns(3,4,5)P3). The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen

>cd08695 C2_Dock-B C2 domains found in Dedicator Of CytoKinesis (Dock) class B proteins

Probab=96.05  E-value=0.097  Score=45.95  Aligned_cols=57  Identities=30%  Similarity=0.396  Sum_probs=41.3

Q ss_pred             ceEEEEeecCCCCCCccccEEEEeeeCC-CCCceEEEEEEeccCCCCC-CceeeeEEEeC
Q 021710           54 YRLATQSDDSGSTRPVWNERFTLPITHS-VRESVLTLEIFHSKLSETP-KPLVGSVKFPL  111 (308)
Q Consensus        54 ~k~kT~v~k~gt~nP~WnE~f~f~l~~~-~~~~~L~l~V~d~~~~~~~-d~lLG~~~ipL  111 (308)
                      ...+|-|... +.+|.|+|++.+.|+.. .....|.|+++|....... ...+|.+.+||
T Consensus        53 se~~S~V~yH-~~~P~W~EtiKi~lP~~~~~~~HL~FtfrH~S~~~k~~~~pfg~s~lpL  111 (189)
T cd08695          53 SEYRSFVLYH-NNSPRWNETIKLPIPIDKFRGSHLRFEFRHCSTKDKGEKKLFGFSFVPL  111 (189)
T ss_pred             ceEEEEEEEc-CCCCCCceeEEEecChhhCCCeeEEEEEEEeeeccCCCCCceEEEEEee
Confidence            3568888887 78999999999998864 3567899999996532212 24567666665

Dock-B is one of 4 classes of Dock family proteins. The members here include: Dock3/MOCA (modifier of cell adhesion) and Dock4. Most of these members have been shown to be GEFs specific for Rac, although Dock4 has also been shown to interact indirectly with the Ras family GTPase Rap1, probably through Rap regulatory proteins. In addition to the C2 domain (AKA Dock homology region (DHR)-1, CED-5, Dock180, MBC-zizimin homology (CZH) 1) and the DHR-2 (AKA CZH2, or Docker), which all Dock180-related proteins have, Dock-B members contain a SH3 domain upstream of the C2 domain and a proline-rich region downstream. DHR-2 has the catalytic activity for Rac and/or Cdc42, but is structurally unrelated to the DH domain. The C2/DHR-1 domains of Dock180 and Dock4 have been shown to bind phosphatidylinositol-3, 4, 5-triphosphate (PtdIns(3,4,5)P3). The C2 domain was first identified in PKC. C2 domains fold int

>cd08399 C2_PI3K_class_I_gamma C2 domain present in class I gamma phosphatidylinositol 3-kinases (PI3Ks)

Probab=95.76  E-value=0.13  Score=44.79  Aligned_cols=73  Identities=16%  Similarity=0.292  Sum_probs=45.8

Q ss_pred             cEEEEEEEEeecCCCCCCCCCCCCCcEEEEEE--cCC--ceEEEEeecCCCCCCccccEEEEeeeCC--CCCceEEEEEE
Q 021710           19 HDLEITIICAKHLKNVNWRNGGDLKPYVVFYV--DPA--YRLATQSDDSGSTRPVWNERFTLPITHS--VRESVLTLEIF   92 (308)
Q Consensus        19 ~~L~VtIisAk~L~~~~~~~~~~~dPYv~v~l--~~~--~k~kT~v~k~gt~nP~WnE~f~f~l~~~--~~~~~L~l~V~   92 (308)
                      ..++|+|+++..+ +.+...  ...-||++.|  +..  ...+|+.... +.++.|||.++|+|.-.  ..+..|.|.||
T Consensus        10 ~~friki~~~~~~-~~~~~~--~~~l~V~~~Ly~g~~~l~~~~T~~~~~-~~~~~WnEwL~f~I~~~dLP~~arLc~ti~   85 (178)
T cd08399          10 RKFRVKILGIDIP-VLPRNT--DLTVFVEANIQHGQQVLCQRRTSPKPF-TEEVLWNTWLEFDIKIKDLPKGALLNLQIY   85 (178)
T ss_pred             CCEEEEEEeeccc-CcCCCC--ceEEEEEEEEEECCeecccceeeccCC-CCCccccccEECccccccCChhhEEEEEEE
Confidence            4578888888633 332111  2456666654  221  1224555555 56899999999987532  35778999999


Q ss_pred             ecc
Q 021710           93 HSK   95 (308)
Q Consensus        93 d~~   95 (308)
                      +..
T Consensus        86 ~~~   88 (178)
T cd08399          86 CGK   88 (178)
T ss_pred             EEe
Confidence            964

PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. The members here are class I, gamma isoform PI3Ks and contain both a Ras-binding domain and a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a cir

>cd08397 C2_PI3K_class_III C2 domain present in class III phosphatidylinositol 3-kinases (PI3Ks)

Probab=95.44  E-value=0.051  Score=46.39  Aligned_cols=71  Identities=25%  Similarity=0.305  Sum_probs=48.4

Q ss_pred             CCCcEEEEEEcC-C----ceEEEEeecCCCCCCccccEEEEeeeCC--CCCceEEEEEEeccCCCCCCceeeeEEEeCcc
Q 021710           41 DLKPYVVFYVDP-A----YRLATQSDDSGSTRPVWNERFTLPITHS--VRESVLTLEIFHSKLSETPKPLVGSVKFPLAH  113 (308)
Q Consensus        41 ~~dPYv~v~l~~-~----~k~kT~v~k~gt~nP~WnE~f~f~l~~~--~~~~~L~l~V~d~~~~~~~d~lLG~~~ipL~~  113 (308)
                      ..+-||++.+-. .    ....|+...- +....|||.++|+|.-.  ..+..|.|.||+.+. ......||.+.++|=+
T Consensus        29 ~~~l~V~~~l~~~~~~L~~pv~T~~~~f-~~~~~WnEwl~fpI~i~dLP~~a~L~iti~~~~~-~~~~~~vg~~~~~lFd  106 (159)
T cd08397          29 NSDLFVTCQVFDDGKPLTLPVQTSYKPF-KNRRNWNEWLTLPIKYSDLPRNSQLAITIWDVSG-TGKAVPFGGTTLSLFN  106 (159)
T ss_pred             CCCEEEEEEEEECCEeccCcEEccccCC-CCCcccceeEEcccchhcCChhheEEEEEEEecC-CCCceEEEEEEEeeEC
Confidence            377888876632 1    1234544444 56789999999987632  357789999999762 3356688988887655

PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. These are the only domains identified in the class III PI3Ks present in this cd. In addition some PI3Ks contain a Ras-binding domain and/or a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Ty

>KOG1924 consensus RhoA GTPase effector DIA/Diaphanous [Signal transduction mechanisms; Cytoskeleton]

Probab=95.26  E-value=0.12  Score=53.64  Aligned_cols=15  Identities=33%  Similarity=0.550  Sum_probs=7.7

Q ss_pred             CCCCccccEEEEeee
Q 021710           65 STRPVWNERFTLPIT   79 (308)
Q Consensus        65 t~nP~WnE~f~f~l~   79 (308)
                      ..+|.|+-.|.|.|.
T Consensus       441 ~~DPdf~yr~~l~id  455 (1102)
T KOG1924|consen  441 GMDPDFKYRFRLDID  455 (1102)
T ss_pred             CCCCCcchhhcccCc
Confidence            455555555554443

>cd04012 C2A_PI3K_class_II C2 domain first repeat present in class II phosphatidylinositol 3-kinases (PI3Ks)

Probab=95.02  E-value=0.1  Score=44.96  Aligned_cols=93  Identities=22%  Similarity=0.236  Sum_probs=56.8

Q ss_pred             cEEEEEEEEeecCCCCCCCCCCCCCcEEEEEEc--CC---ceEEEEeec--C-CCCCCccccEEEEeeeCC--CCCceEE
Q 021710           19 HDLEITIICAKHLKNVNWRNGGDLKPYVVFYVD--PA---YRLATQSDD--S-GSTRPVWNERFTLPITHS--VRESVLT   88 (308)
Q Consensus        19 ~~L~VtIisAk~L~~~~~~~~~~~dPYv~v~l~--~~---~k~kT~v~k--~-gt~nP~WnE~f~f~l~~~--~~~~~L~   88 (308)
                      ..+.|+|.++.++.......  ..+-||.+.+-  ..   ....|+...  + -...+.|||.++|++.-.  ..+..|.
T Consensus         8 ~~~~i~v~~~h~~~~~~~~~--~~~~~v~~~l~~g~~~L~~~~~T~~~~~~~~f~~~~~Wnewl~F~i~i~~LPrearL~   85 (171)
T cd04012           8 DLLSVTVSSLHRIPPTWVQS--FEDFYLSCSLYHGGRLLCSPVTTKPVKITKSFFPRVVWDEWIEFPIPVCQLPRESRLV   85 (171)
T ss_pred             ccEEEEEEEeecCChHHhhc--cccEEEEEEEEECCEECcCceeccccccccCccccccccceEECccchhcCChhHEEE
Confidence            56889999999987654322  37788887662  21   122443321  1 023577999999987521  2577899


Q ss_pred             EEEEeccCCCC--------CCceeeeEEEeCcc
Q 021710           89 LEIFHSKLSET--------PKPLVGSVKFPLAH  113 (308)
Q Consensus        89 l~V~d~~~~~~--------~d~lLG~~~ipL~~  113 (308)
                      |.||+......        .+..||.+.++|=+
T Consensus        86 itl~~~~~~~~~~~~~~~~~~~~lG~~~~~LFd  118 (171)
T cd04012          86 LTLYGTTSSPDGGSNKQRMGPEELGWVSLPLFD  118 (171)
T ss_pred             EEEEEEecCCccccccccccceEEEEEeEeeEc
Confidence            99998652110        23466666665544

There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a N-terminal C2 domain, a PIK domain, and a kinase catalytic domain. Unlike class I and class III, class II PI3Ks have additionally a PX domain and a C-terminal C2 domain containing a nuclear localization signal both of which bind phospholipids though in a slightly different fashion. Class II PIK3s act downstream of receptors for growth factors, integrins, and chemokines. PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. C2 domains fold into an 8-standed beta-sandwich that c

>PF14429 DOCK-C2: C2 domain in Dock180 and Zizimin proteins; PDB: 3L4C_A

Probab=94.92  E-value=0.081  Score=46.00  Aligned_cols=59  Identities=14%  Similarity=0.264  Sum_probs=36.4

Q ss_pred             ceEEEEeecCCCCCCccccEEEEeeeCCC-CCceEEEEEEeccCCCCCC--ceeeeEEEeCcc
Q 021710           54 YRLATQSDDSGSTRPVWNERFTLPITHSV-RESVLTLEIFHSKLSETPK--PLVGSVKFPLAH  113 (308)
Q Consensus        54 ~k~kT~v~k~gt~nP~WnE~f~f~l~~~~-~~~~L~l~V~d~~~~~~~d--~lLG~~~ipL~~  113 (308)
                      ....|.|... +.+|.|+|+|.+.|+..+ ....|.|+++|.......+  ..+|.+.+||-+
T Consensus        59 ~~~~S~v~yh-~k~P~f~deiKi~LP~~l~~~~HLlFtf~h~s~~~~~~~~~~~g~a~lpL~~  120 (184)
T PF14429_consen   59 TSYYSSVYYH-NKNPQFNDEIKIQLPPDLFPKHHLLFTFYHVSCKESKEKSKPFGYAFLPLMD  120 (184)
T ss_dssp             S-EE----TT--SS-EEEEEEEEEE-CCCCTTEEEEEEEEE---SSSS-SS-EEEEEEEESB-
T ss_pred             eEEEEEEEec-CCCCCccEEEEEEcCchhcccEEEEEEEEeeccccccCccceeEEEEEEeee
Confidence            4567777777 789999999999998753 5678999999976332222  689999999987

>KOG1924 consensus RhoA GTPase effector DIA/Diaphanous [Signal transduction mechanisms; Cytoskeleton]

Probab=94.75  E-value=0.13  Score=53.52  Aligned_cols=10  Identities=30%  Similarity=0.647  Sum_probs=4.6

Q ss_pred             EEEeCccccc
Q 021710          107 VKFPLAHLVD  116 (308)
Q Consensus       107 ~~ipL~~L~~  116 (308)
                      ..|++..|++
T Consensus       452 l~id~~~liD  461 (1102)
T KOG1924|consen  452 LDIDLTELID  461 (1102)
T ss_pred             ccCcHHHHHH
Confidence            3445544443

>PF00792 PI3K_C2: Phosphoinositide 3-kinase C2; InterPro: IPR002420 Phosphatidylinositol 3-kinase (PI3-kinase) (2

Probab=93.82  E-value=0.27  Score=40.87  Aligned_cols=59  Identities=25%  Similarity=0.377  Sum_probs=39.4

Q ss_pred             eEEEEeecCCCCCCccccEEEEeeeC--CCCCceEEEEEEeccCCCCCC----ceeeeEEEeCccc
Q 021710           55 RLATQSDDSGSTRPVWNERFTLPITH--SVRESVLTLEIFHSKLSETPK----PLVGSVKFPLAHL  114 (308)
Q Consensus        55 k~kT~v~k~gt~nP~WnE~f~f~l~~--~~~~~~L~l~V~d~~~~~~~d----~lLG~~~ipL~~L  114 (308)
                      ...|+.......++.|||.+.|++.-  -..+..|.|.||..+. ....    ..||.+.++|=+.
T Consensus        21 ~~~T~~~~~~~~~~~W~e~l~F~i~i~~LPr~a~L~~~l~~~~~-~~~~~~~~~~lgw~n~~lFd~   85 (142)
T PF00792_consen   21 VQSTSYVPFSFSRPKWDEWLTFPIPISDLPREARLCFTLYGVDS-KKKSKKKKVPLGWVNLPLFDY   85 (142)
T ss_dssp             EEE-S-EESS-SSEEEEEEEEEEEEGGGS-TTEEEEEEEEEEEC-STTT--EEEEEEEEEEESB-T
T ss_pred             eeeccccccccccceEeeEEEeecChHHCChhHeEEEEEEEecC-CCccccceeEEEEEEEEeECC
Confidence            34566665512799999999998652  2367899999999763 2233    6899999987664

7.1.137 from EC) is an enzyme that phosphorylates phosphoinositides on the 3-hydroxyl group of the inositol ring. The usually N-terminal C2 domain interacts mainly with the scaffolding helical domain of the enzyme, and exhibits only minor interactions with the catalytic domain []. The domain consists of two four-stranded antiparallel beta-sheets that form a beta-sandwich. Isolated C2 domain binds multilamellar phospholipid vesicles which suggests that this domain could play a role in membrane association. Membrane attachment by C2 domains is typically mediated by the loops connecting beta-strand regions that in other C2 domain-containing proteins are calcium-binding region; GO: 0016303 1-phosphatidylinositol-3-kinase activity, 0046854 phosphatidylinositol phosphorylation, 0048015 phosphatidylinositol-mediated signaling, 0005942 phosphatidylinositol 3-kinase complex; PDB: 1E8W_A 1E8X_A 1E7V_A 1E90_A 1E7U_A 3L54_A 1E8Z_A 2CHX_A 3ML8_A 3OAW_A ....

>PF15625 CC2D2AN-C2: CC2D2A N-terminal C2 domain

Probab=93.14  E-value=0.48  Score=40.68  Aligned_cols=72  Identities=21%  Similarity=0.270  Sum_probs=56.6

Q ss_pred             CCCcEEEEEEcCCceEEEEeecC-CCCCCccccEEEEeeeCCCCCceEEEEEEeccCCCCCCceeeeEEEeCccccc
Q 021710           41 DLKPYVVFYVDPAYRLATQSDDS-GSTRPVWNERFTLPITHSVRESVLTLEIFHSKLSETPKPLVGSVKFPLAHLVD  116 (308)
Q Consensus        41 ~~dPYv~v~l~~~~k~kT~v~k~-gt~nP~WnE~f~f~l~~~~~~~~L~l~V~d~~~~~~~d~lLG~~~ipL~~L~~  116 (308)
                      ...-|+++.++.+.+.+|+...- ....-.+||.|.+.+.+  --..|.|+||....  ..+.+|+++.|||-....
T Consensus        36 ~~~~~ikl~~N~k~V~~T~~~~l~~dF~v~f~~~f~v~i~~--~Pesi~l~i~E~~~--~~~~~la~v~vpvP~~~~  108 (168)
T PF15625_consen   36 KTRYYIKLFFNDKEVSRTRSRPLWSDFRVHFNEIFNVQITR--WPESIKLEIYEKSG--LSDRLLAEVFVPVPGSTV  108 (168)
T ss_pred             heeEEEEEEECCEEEEeeeeEecCCCeEEeccCEEEEEEec--CCCEEEEEEEEccC--ccceEEEEEEeeCCCCcc
Confidence            36789999999878888877654 35556788999999877  35679999999873  588999999999866543

>KOG1327 consensus Copine [Signal transduction mechanisms]

Probab=92.37  E-value=0.35  Score=48.54  Aligned_cols=63  Identities=16%  Similarity=0.298  Sum_probs=49.2

Q ss_pred             ceEEEEeecCCCCCCccccEEEEeeeCCCCCceEEEEEEeccCC---CCCCceeeeEEEeCcccccCC
Q 021710           54 YRLATQSDDSGSTRPVWNERFTLPITHSVRESVLTLEIFHSKLS---ETPKPLVGSVKFPLAHLVDSD  118 (308)
Q Consensus        54 ~k~kT~v~k~gt~nP~WnE~f~f~l~~~~~~~~L~l~V~d~~~~---~~~d~lLG~~~ipL~~L~~~~  118 (308)
                      ...+|.++.+ .+||.|.++|.+...-+ ..+.|.|++++.+..   ....+|+|++...|.++....
T Consensus        41 e~~rte~i~~-~~~p~f~~~~~l~y~fE-~vQ~l~~~~~~~~~~~~~l~~~dflg~~~c~l~~ivs~~  106 (529)
T KOG1327|consen   41 EVGRTEVIRN-VLNPFFTKKFLLQYRFE-KVQLLRFEVYDIDSRTPDLSSADFLGTAECTLSQIVSSS  106 (529)
T ss_pred             cccceeeeec-cCCccceeeechhheee-eeeeEEEEEeecCCccCCcchhcccceeeeehhhhhhhh
Confidence            4568999998 89999999988776543 456789999986632   346789999999999987643

>cd08679 C2_DOCK180_related C2 domains found in Dedicator Of CytoKinesis 1 (DOCK 180) and related proteins

Probab=91.95  E-value=0.65  Score=40.15  Aligned_cols=57  Identities=16%  Similarity=0.271  Sum_probs=40.2

Q ss_pred             EEEEeecCCCCCCccccEEEEeeeCCC-CCceEEEEEEeccCCC----CCCceeeeEEEeCcc
Q 021710           56 LATQSDDSGSTRPVWNERFTLPITHSV-RESVLTLEIFHSKLSE----TPKPLVGSVKFPLAH  113 (308)
Q Consensus        56 ~kT~v~k~gt~nP~WnE~f~f~l~~~~-~~~~L~l~V~d~~~~~----~~d~lLG~~~ipL~~  113 (308)
                      .-|.++.. ..+|.|+|+|.+.|+..+ ....|.|+++|.....    .....+|-+.+||-+
T Consensus        54 ~~~sv~~~-~k~p~f~deiKi~LP~~l~~~~HLlFtf~hv~~~~~~~~~~~~~~g~a~lpL~~  115 (178)
T cd08679          54 EYTSVVYY-HKNPVFNDEIKIQLPADLTPQHHLLFTFYHVSSKKKQGDKEETPFGYAFLPLMD  115 (178)
T ss_pred             eEEEEEEc-CCCCCCceeEEEecCCccCCCeEEEEEEEccccccccCCCccceEEEEEEeccc
Confidence            33444444 389999999999997654 5678999999966221    235678888887765

Dock180 was first identified as an 180kd proto-oncogene product c-Crk-interacting protein involved in actin cytoskeletal changes. It is now known that it has Rac-specific GEF activity, but lacks the conventional Dbl homology (DH) domain. There are 10 additional related proteins that can be divided into four classes based on sequence similarity and domain organization: Dock-A which includes Dock180/Dock1, Dock2, and Dock5; Dock-B which includes Dock3/MOCA (modifier of cell adhesion) and Dock4; Dock-C which includes Dock6/Zir1, Dock7/Zir2, and Dock8/Zir3; and Dock-D, which includes Dock9/Zizimin1, Dock10/Zizimin3, and Dock11/Zizimin2/ACG (activated Cdc42-associated GEF). Most of members of classes Dock-A and Dock-B are the GEFs specific for Rac. Those of Dock-D are Cdc42-specific GEFs while those of Dock-C are the GEFs for both. All Dock180-related proteins have two common homolo

>smart00142 PI3K_C2 Phosphoinositide 3-kinase, region postulated to contain C2 domain

Probab=91.82  E-value=0.95  Score=35.33  Aligned_cols=72  Identities=26%  Similarity=0.258  Sum_probs=45.3

Q ss_pred             EEEEEEEeecCCCCCCCCCCCCCcEEEEEEc--CC---ceEEEEeecCCCCCCccccEEEEeeeC--CCCCceEEEEEEe
Q 021710           21 LEITIICAKHLKNVNWRNGGDLKPYVVFYVD--PA---YRLATQSDDSGSTRPVWNERFTLPITH--SVRESVLTLEIFH   93 (308)
Q Consensus        21 L~VtIisAk~L~~~~~~~~~~~dPYv~v~l~--~~---~k~kT~v~k~gt~nP~WnE~f~f~l~~--~~~~~~L~l~V~d   93 (308)
                      +.+++...+++.......  ..+-||++.+-  ..   ....|+...- ...+.|||.++|++.-  -..+..|.|.||+
T Consensus        13 ~~~~~~~~~~~~l~~~~~--~~~l~v~~~l~~g~~~l~~pv~t~~~~~-~~~~~Wnewl~f~i~i~~LPr~a~L~~~i~~   89 (100)
T smart00142       13 LVITIALIHGIPLNWSRD--YSDLYVEIQLYHGGKLLCLPVSTSYKPF-FPSVKWNEWLTFPIQISDLPREARLCITIYE   89 (100)
T ss_pred             eEEEEEEeeCCCcccccC--cceEEEEEEEEECCEEccCcEEecccCC-CCCcccceeEEccCchhcCChhhEEEEEEEE
Confidence            566777777765443222  13788887662  21   1224444433 5569999999998653  2357889999998


Q ss_pred             cc
Q 021710           94 SK   95 (308)
Q Consensus        94 ~~   95 (308)
                      ..
T Consensus        90 ~~   91 (100)
T smart00142       90 VK   91 (100)
T ss_pred             ee
Confidence            54

Outlier of C2 family.

>KOG1329 consensus Phospholipase D1 [Lipid transport and metabolism]

Probab=91.73  E-value=0.56  Score=49.60  Aligned_cols=89  Identities=15%  Similarity=0.209  Sum_probs=67.8

Q ss_pred             CCcEEEEEEcCCceEEEEeecCCCCCCccccEEEEeeeCCCCCceEEEEEEeccCCCCCCceeeeEEEeCcccccCCCCC
Q 021710           42 LKPYVVFYVDPAYRLATQSDDSGSTRPVWNERFTLPITHSVRESVLTLEIFHSKLSETPKPLVGSVKFPLAHLVDSDSSE  121 (308)
Q Consensus        42 ~dPYv~v~l~~~~k~kT~v~k~gt~nP~WnE~f~f~l~~~~~~~~L~l~V~d~~~~~~~d~lLG~~~ipL~~L~~~~~~~  121 (308)
                      ++.|+++.+......+|....+.-.+|.|.+.|.+.+..  ....++++|.+.+. .+...++|.++++...+..+..+ 
T Consensus       138 ~e~Ylt~~l~~~~~~~t~~~~~f~e~s~~~f~~~~~~~h--~~g~v~~~~~~~~~-~G~s~~w~~v~~s~~~~~~~~~~-  213 (887)
T KOG1329|consen  138 LENYLTVVLHKARYRRTHVIYEFLENSRWSFSFDIGFAH--KAGYVIFRVKGARV-PGWSKRWGRVKISFLQYCSGHRI-  213 (887)
T ss_pred             ccchheeeechhhhhchhhhhcccccchhhhhccccccc--cccEEEEeecCCcc-ccceeEEEEeccchhhhhccccc-
Confidence            478999998876777788877623789999998777665  35678888877762 34477999999999999886433 


Q ss_pred             CCceeEEEEEeCCCCCC
Q 021710          122 PTQYVRKLEVLRPSGRP  138 (308)
Q Consensus       122 ~~~~~~~~~L~~~sg~~  138 (308)
                          ..|+.+.+.++++
T Consensus       214 ----~~~~~Il~~d~~~  226 (887)
T KOG1329|consen  214 ----GGWFPILDNDGKP  226 (887)
T ss_pred             ----cceeeeeccCCcc
Confidence                4789998776664

>cd08696 C2_Dock-C C2 domains found in Dedicator Of CytoKinesis (Dock) class C proteins

Probab=90.98  E-value=0.94  Score=39.47  Aligned_cols=58  Identities=12%  Similarity=0.227  Sum_probs=40.5

Q ss_pred             ceEEEEeecCCCCCCccccEEEEeeeCCC-CCceEEEEEEeccCCCC-----CCceeeeEEEeCc
Q 021710           54 YRLATQSDDSGSTRPVWNERFTLPITHSV-RESVLTLEIFHSKLSET-----PKPLVGSVKFPLA  112 (308)
Q Consensus        54 ~k~kT~v~k~gt~nP~WnE~f~f~l~~~~-~~~~L~l~V~d~~~~~~-----~d~lLG~~~ipL~  112 (308)
                      ....|.|... +.+|.|+|+|.+.|+..+ ....|.|+++|.+-...     ....+|-+.+||-
T Consensus        54 ~~~~S~V~yH-nk~P~f~DEiKi~LP~~l~~~hHLlFtF~Hvs~~~k~~~~~~e~~~Gys~lPL~  117 (179)
T cd08696          54 TEAYTAVTYH-NKSPDFYDEIKIKLPADLTDNHHLLFTFYHISCQKKQEGGSVETPIGYTWLPLL  117 (179)
T ss_pred             eeEEEEEEEe-CCCCcccceEEEEcCCCCCCCeEEEEEEEEeeccccccCCCccceEEEEEEeee
Confidence            4677888877 789999999999988653 45679999999552111     1245666666654

Dock-C is one of 4 classes of Dock family proteins. The members here include: Dock6/Zir1, Dock7/Zir2, and Dock8/Zir3. Dock-C members are GEFs for both Rac and Cdc42. In addition to the C2 domain (AKA Dock homology region (DHR)-1, CED-5, Dock180, MBC-zizimin homology (CZH) 1) and the DHR-2 (AKA CZH2, or Docker), which all Dock180-related proteins have, Dock-C members contain a functionally uncharacterized domain upstream of the C2 domain. DHR-2 has the catalytic activity for Rac and/or Cdc42, but is structurally unrelated to the DH domain. The C2/DHR-1 domains of Dock180 and Dock4 have been shown to bind phosphatidylinositol-3, 4, 5-triphosphate (PtdIns(3,4,5)P3). The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strand

>cd08697 C2_Dock-D C2 domains found in Dedicator Of CytoKinesis (Dock) class C proteins

Probab=90.77  E-value=1.1  Score=39.26  Aligned_cols=59  Identities=12%  Similarity=0.203  Sum_probs=41.2

Q ss_pred             ceEEEEeecCCCCCCccccEEEEeeeCCC-CCceEEEEEEeccCCC--------CCCceeeeEEEeCcc
Q 021710           54 YRLATQSDDSGSTRPVWNERFTLPITHSV-RESVLTLEIFHSKLSE--------TPKPLVGSVKFPLAH  113 (308)
Q Consensus        54 ~k~kT~v~k~gt~nP~WnE~f~f~l~~~~-~~~~L~l~V~d~~~~~--------~~d~lLG~~~ipL~~  113 (308)
                      ....|.|... +.+|.|+|++.+.|+..+ ....|.|+++|.+-..        .....+|-+.+||-.
T Consensus        56 ~~~~s~V~yh-~k~P~f~dEiKI~LP~~l~~~hHLlFtFyHvsc~~~~k~~~~~~~e~~~Gys~lPLl~  123 (185)
T cd08697          56 TSAYAAVLHH-NQNPEFYDEIKIELPTQLHEKHHLLFTFYHVSCDINKKGKKKDGVETPVGYAWLPLLK  123 (185)
T ss_pred             eEEEEEEEEc-CCCCccceeEEEecCCcCCCCeeEEEEEEeeccccccccccCCCccceEEEEEEeeec
Confidence            4677888887 799999999999987643 4567999999965111        112456666666644

Dock-D is one of 4 classes of Dock family proteins. The members here include: Dock9/Zizimin1, Dock10/Zizimin3, and Dock11/Zizimin2/ACG (activated Cdc42-associated GEF). Dock-D are Cdc42-specific GEFs. In addition to the C2 domain (AKA Dock homology region (DHR)-1, CED-5, Dock180, MBC-zizimin homology (CZH) 1) and the DHR-2 (AKA CZH2, or Docker), which all Dock180-related proteins have, Dock-D members contain a functionally uncharacterized domain and a PH domain upstream of the C2 domain. DHR-2 has the catalytic activity for Rac and/or Cdc42, but is structurally unrelated to the DH domain. The C2/DHR-1 domains of Dock180 and Dock4 have been shown to bind phosphatidylinositol-3, 4, 5-triphosphate (PtdIns(3,4,5)P3). The PH domain broadly binds to phospholipids and is thought to be involved in targeting the plasma membrane. The C2 domain was first identified in PKC. C2 domains fold into an 8-stande

>PTZ00447 apical membrane antigen 1-like protein; Provisional

Probab=88.93  E-value=3.8  Score=39.19  Aligned_cols=117  Identities=18%  Similarity=0.230  Sum_probs=75.5

Q ss_pred             cEEEEEEEEeecCCCCCCCCCCCCCcEEEEEEcCCceEEEEeecCCCCCC-ccccEEEEeeeCCCCCceEEEEEEeccCC
Q 021710           19 HDLEITIICAKHLKNVNWRNGGDLKPYVVFYVDPAYRLATQSDDSGSTRP-VWNERFTLPITHSVRESVLTLEIFHSKLS   97 (308)
Q Consensus        19 ~~L~VtIisAk~L~~~~~~~~~~~dPYv~v~l~~~~k~kT~v~k~gt~nP-~WnE~f~f~l~~~~~~~~L~l~V~d~~~~   97 (308)
                      ..|.|.|.+-.++..       ....|+.+..+. ...+|..+..+-.+- .-.|...+.+..  .+.+|+|.||-..  
T Consensus        58 F~LLVeI~EI~~i~k-------~khiyIef~~Gr-~d~TT~~IpTsKK~RI~IqqRV~IkIRQ--cDnTLkI~lfKKk--  125 (508)
T PTZ00447         58 FYLLVKINEIFNINK-------YKHIYIIFSTDK-YDFTTDEIPTNKKNRIHIDQRVDIKIRQ--CDETLRVDLFTTK--  125 (508)
T ss_pred             eeEEEEehhhhcccc-------ceeEEEEEEcCc-eEEEccccccCcCceEEEeeeeeeeeee--cCceEEEEEEecc--
Confidence            456677666544421       256788888886 566665554422221 223444445554  5789999999987  


Q ss_pred             CCCCceeeeEEEeCcccccCCCCCCCceeEEEEEeCCCCCCccEEEEEEEEccC
Q 021710           98 ETPKPLVGSVKFPLAHLVDSDSSEPTQYVRKLEVLRPSGRPQGKIRVKLVLNGR  151 (308)
Q Consensus        98 ~~~d~lLG~~~ipL~~L~~~~~~~~~~~~~~~~L~~~sg~~~G~L~v~v~~~~~  151 (308)
                      ..+..-||.+.|.++.-+-....   ....||-+ ..+|...++|.+++.=..+
T Consensus       126 Lvkk~hIgdI~InIn~dIIdk~F---PKnkWy~c-~kDGq~~cRIqLSFhKL~k  175 (508)
T PTZ00447        126 LTKKVHIGQIKIDINASVISKSF---PKNEWFVC-FKDGQEICKVQMSFYKIQK  175 (508)
T ss_pred             ccceeEEEEEEecccHHHHhccC---CccceEEE-ecCCceeeeEEEEehhhhh
Confidence            55778899999998763322222   45689999 4678888888887765554

>PF14924 DUF4497: Protein of unknown function (DUF4497)

Probab=85.99  E-value=3.1  Score=33.20  Aligned_cols=68  Identities=18%  Similarity=0.277  Sum_probs=45.6

Q ss_pred             CCceEEEEEEeccCC--CCCCceeeeEEEeCcccccC----C-----CCCCCceeEEEEEeCCCCCCccEEEEEEEEcc
Q 021710           83 RESVLTLEIFHSKLS--ETPKPLVGSVKFPLAHLVDS----D-----SSEPTQYVRKLEVLRPSGRPQGKIRVKLVLNG  150 (308)
Q Consensus        83 ~~~~L~l~V~d~~~~--~~~d~lLG~~~ipL~~L~~~----~-----~~~~~~~~~~~~L~~~sg~~~G~L~v~v~~~~  150 (308)
                      ....|++.+++....  .....+||++.|++.++...    .     ..........|+|++..+...|+|.+.+++..
T Consensus        27 ~~~pl~i~~~~~~~~~~~~~~~liG~~~i~l~~~~~~i~~~~~~~~~~p~s~~~k~~f~L~~~~~~~~G~I~l~iRLsc  105 (112)
T PF14924_consen   27 SSFPLYIVVKKVPPGFPTPPPMLIGSCPISLAEAFNRILKDSAECNGQPSSKTIKGTFPLFDENGNPVGEISLYIRLSC  105 (112)
T ss_pred             hCCceEEEEEecCCCCCCCccceeeEEEecHHHHHHHHHHHHHhhccCCCchhhcceeEeecCCCceeeeEEEEEEEec
Confidence            355677766654311  23567899999999876521    0     00011335689999998899999999998865

>KOG0694 consensus Serine/threonine protein kinase [Signal transduction mechanisms]

Probab=85.87  E-value=0.22  Score=51.26  Aligned_cols=96  Identities=9%  Similarity=0.081  Sum_probs=59.5

Q ss_pred             CCCcEEEEEEcCCceEEEEeecCCCCCCccccEEEEeeeCCCCCceEEEEEEeccCCCCCCceeeeEEEeCcccccCCCC
Q 021710           41 DLKPYVVFYVDPAYRLATQSDDSGSTRPVWNERFTLPITHSVRESVLTLEIFHSKLSETPKPLVGSVKFPLAHLVDSDSS  120 (308)
Q Consensus        41 ~~dPYv~v~l~~~~k~kT~v~k~gt~nP~WnE~f~f~l~~~~~~~~L~l~V~d~~~~~~~d~lLG~~~ipL~~L~~~~~~  120 (308)
                      ..++|+.|.++-.....+.+.+. +..|.|+|+|.+.+..   ...+.|.|++... ...+.+...+++-.+++... ..
T Consensus        27 al~~y~~v~vk~~~~~~~~~~~~-~~~~~~~~~F~~~v~~---~~~~~i~v~~~~~-~~~~~~~a~~~~~~e~~k~~-~~  100 (694)
T KOG0694|consen   27 ALQPYLAVELKVKQGAENMTKVE-LRIPELRETFHVEVVA---GGAKNIIVLLKSP-DPKALSEAQLSLQEESQKLL-AL  100 (694)
T ss_pred             hhhhhheeccceeecccccCCCC-CCCchhhhheeeeeec---CCceEEEEEecCC-cchhhHHHhHHHHHHHHHHH-hh
Confidence            48899988887544444444555 8999999999999775   5678899998762 33333344444434444331 11


Q ss_pred             CCCceeEEEEEeCCCCCCccEEEEEEEEcc
Q 021710          121 EPTQYVRKLEVLRPSGRPQGKIRVKLVLNG  150 (308)
Q Consensus       121 ~~~~~~~~~~L~~~sg~~~G~L~v~v~~~~  150 (308)
                         ....|..+     ++.|++.+.+.+..
T Consensus       101 ---~~~~w~~~-----~~~g~~~~~~~~~~  122 (694)
T KOG0694|consen  101 ---EQRLWVLI-----EELGTLLKPAALTG  122 (694)
T ss_pred             ---hhhhcccc-----ccccceeeeecccC
Confidence               23456654     34566666666655

>KOG3543 consensus Ca2+-dependent activator protein [Signal transduction mechanisms]

Probab=84.73  E-value=5.3  Score=41.08  Aligned_cols=116  Identities=17%  Similarity=0.291  Sum_probs=75.5

Q ss_pred             cEEEEEEEEeecCCCCCCCCCCCCCcEEEEEEcCCceEEEEeecCCCCCCccccEEEEeeeCCCCCceEEEEEEeccCCC
Q 021710           19 HDLEITIICAKHLKNVNWRNGGDLKPYVVFYVDPAYRLATQSDDSGSTRPVWNERFTLPITHSVRESVLTLEIFHSKLSE   98 (308)
Q Consensus        19 ~~L~VtIisAk~L~~~~~~~~~~~dPYv~v~l~~~~k~kT~v~k~gt~nP~WnE~f~f~l~~~~~~~~L~l~V~d~~~~~   98 (308)
                      -.++|.|++..+|+.+...    --.||++.+++ .+..|.-..  ...|.|.-.=.|.-..+  -..+++.+|.+....
T Consensus       341 ~smevvvmevqglksvapn----rivyctmeveg-eklqtdqae--askp~wgtqgdfstthp--lpvvkvklftestgv  411 (1218)
T KOG3543|consen  341 LSMEVVVMEVQGLKSVAPN----RIVYCTMEVEG-EKLQTDQAE--ASKPKWGTQGDFSTTHP--LPVVKVKLFTESTGV  411 (1218)
T ss_pred             eeeeEEEeeeccccccCCC----eeEEEEEEecc-cccccchhh--hcCCCCCcCCCcccCCC--CceeEEEEEeeccee
Confidence            4578889999999977532    34799999987 666666655  46899998767766653  345777777765222


Q ss_pred             --CCCceeeeEEEeCcccccCCCCCCCceeEEEEEeCCCCCCccEEEEEEEEcc
Q 021710           99 --TPKPLVGSVKFPLAHLVDSDSSEPTQYVRKLEVLRPSGRPQGKIRVKLVLNG  150 (308)
Q Consensus        99 --~~d~lLG~~~ipL~~L~~~~~~~~~~~~~~~~L~~~sg~~~G~L~v~v~~~~  150 (308)
                        ..|.-||++.+.-..    +..   ....|+.+.-+.....-.|.|++.++-
T Consensus       412 laledkelgrvil~ptp----ns~---ks~ewh~mtvpknsqdqdlkiklavrm  458 (1218)
T KOG3543|consen  412 LALEDKELGRVILQPTP----NSA---KSPEWHTMTVPKNSQDQDLKIKLAVRM  458 (1218)
T ss_pred             EEeechhhCeEEEecCC----CCc---CCccceeeecCCCCcCccceEEEEEec
Confidence              356678877653211    111   235788887666555556666666654

>PF14186 Aida_C2: Cytoskeletal adhesion; PDB: 2QZQ_A 2QZ5_A

Probab=84.13  E-value=4.1  Score=34.33  Aligned_cols=94  Identities=15%  Similarity=0.108  Sum_probs=50.5

Q ss_pred             cEEEEEEEEeecCCCCCCCCCCCCCcEEEEEEcC------CceEEEEeecC-CCCCCccccEEEEeee--CCCCCceEEE
Q 021710           19 HDLEITIICAKHLKNVNWRNGGDLKPYVVFYVDP------AYRLATQSDDS-GSTRPVWNERFTLPIT--HSVRESVLTL   89 (308)
Q Consensus        19 ~~L~VtIisAk~L~~~~~~~~~~~dPYv~v~l~~------~~k~kT~v~k~-gt~nP~WnE~f~f~l~--~~~~~~~L~l   89 (308)
                      ..|.|.|.+.. |+....    -.|||++|++-.      ...+.|.+... .+..-.||....+...  +-.....+.|
T Consensus        13 t~l~v~Iekig-lkda~~----~~~P~~tVSV~D~~G~~ve~~QdTpv~~~~~~~yv~f~~~v~lqtple~lp~Gaai~f   87 (147)
T PF14186_consen   13 TYLSVFIEKIG-LKDASQ----YIDPYFTVSVKDGNGKDVEPPQDTPVGSRREDNYVHFNNTVHLQTPLEKLPKGAAIFF   87 (147)
T ss_dssp             -EEEEEEEEEE--TTGGG-----EEEEEEEEEE-TTS-BSS--EE--S-SEEETTEEEEEEEEE-SS-GGGS-TT-EEEE
T ss_pred             ceEEEEEEEEE-ECChHH----ccCCeEEEEEECCCCCCccccccCCCcccccCCEEEEcccEEEcCCHHHCCCceEEEE
Confidence            56777776655 776543    378999999842      24566666522 1233344444443322  2225678999


Q ss_pred             EEEeccCCCCCCceeeeEEEeCcccccC
Q 021710           90 EIFHSKLSETPKPLVGSVKFPLAHLVDS  117 (308)
Q Consensus        90 ~V~d~~~~~~~d~lLG~~~ipL~~L~~~  117 (308)
                      |+.|++....+....+.+-+.+++|..+
T Consensus        88 E~kH~K~kk~k~S~kcw~fme~dei~~g  115 (147)
T PF14186_consen   88 EFKHYKPKKKKTSTKCWAFMELDEIKPG  115 (147)
T ss_dssp             EEEEEETTTTCEEEEEEEEEEGGG--SE
T ss_pred             EEEeeeccceeeeeeEEEEEEhhhccCC
Confidence            9999885444445678888899888764

>PF09849 DUF2076: Uncharacterized protein conserved in bacteria (DUF2076); InterPro: IPR018648 This family of hypothetical prokaryotic proteins has no known function but includes putative perimplasmic ligand-binding sensor proteins

Probab=80.59  E-value=3.4  Score=37.88  Aligned_cols=17  Identities=24%  Similarity=0.364  Sum_probs=9.5

Q ss_pred             HHHHHHhhhhhhHHHHh
Q 021710          265 QKLQKQFGGLSLEEEVN  281 (308)
Q Consensus       265 ga~~g~lgg~~~~~~~~  281 (308)
                      ..+|||.||++|.++|.
T Consensus       143 ~TAAGVAGG~lL~n~i~  159 (247)
T PF09849_consen  143 QTAAGVAGGMLLANGIE  159 (247)
T ss_pred             HHHHHHHHHHHHHHHHH
Confidence            44555555555555554

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	308
2fk9_A	157	Protein kinase C, ETA type; ATP-binding, metal-bin	1e-15
1gmi_A	136	Protein kinase C, epsilon type; PKC, C2 domain, X-	1e-14
2nq3_A	173	Itchy homolog E3 ubiquitin protein ligase; C2 doma	3e-14
1wfj_A	136	Putative elicitor-responsive gene; C2 domain, rike	4e-14
3pyc_A	132	E3 ubiquitin-protein ligase smurf1; phospholipid b	2e-11
2ep6_A	133	MCTP2 protein; beta sandwich, Ca2+ binding, membra	1e-10
3b7y_A	153	E3 ubiquitin-protein ligase NEDD4; C2 domain, UBL-	2e-09
3m7f_B	176	E3 ubiquitin-protein ligase NEDD4; C2 domain, GRB1	4e-09
3fbk_A	153	RGS3, RGP3, regulator of G-protein signaling 3; al	1e-08
1rlw_A	126	Phospholipase A2, CALB domain; hydrolase, C2 domai	1e-08
3kwu_A	148	MUNC13-1; calcium binding protein, phospholipid bi	5e-08
2dmh_A	140	Myoferlin; beta-sandwich, FER-1-like protein 3, mu	1e-07
3rdl_A	137	Protein kinase C alpha type; protein kinase PKC, t	1e-07
2r83_A	284	Synaptotagmin-1; C2A-C2B, exocytosis, calcium, cel	6e-07
2r83_A	284	Synaptotagmin-1; C2A-C2B, exocytosis, calcium, cel	3e-04
1dqv_A	296	Synaptotagmin III; beta sandwich, calcium ION, C2	1e-06
1dqv_A	296	Synaptotagmin III; beta sandwich, calcium ION, C2	3e-05
2dmg_A	142	KIAA1228 protein; beta-sandwich, structural genomi	1e-06
1a25_A	149	CALB, protein kinase C (beta); calcium++/phospholi	1e-06
3fdw_A	148	Synaptotagmin-like protein 4; structural genomics,	3e-06
2bwq_A	129	Regulating synaptic membrane exocytosis protein 2;	4e-06
1v27_A	141	Regulating synaptic membrane exocytosis protein 2;	8e-06
2z0u_A	155	WW domain-containing protein 1; C2 domain, alterna	9e-06
1ugk_A	138	Synaptotagmin IV, KIAA1342; beta sandwich, structu	1e-05
2chd_A	142	Rabphilin-3A, exophilin-1; C2 domain, C2A, calcium	1e-05
3f04_A	143	Synaptotagmin-1; C2A, calcium, cell junction, cyto	2e-05
3h0g_A	1752	DNA-directed RNA polymerase II subunit RPB1; trans	2e-05
3h0g_A	1752	DNA-directed RNA polymerase II subunit RPB1; trans	3e-04
1m2v_B	926	SEC24, protein transport protein SEC24, SEC24P, SE	4e-05
1m2v_B	926	SEC24, protein transport protein SEC24, SEC24P, SE	5e-04
1m2v_B	926	SEC24, protein transport protein SEC24, SEC24P, SE	7e-04
1twf_A	1733	B220, DNA-directed RNA polymerase II largest subun	6e-05
1twf_A	1733	B220, DNA-directed RNA polymerase II largest subun	4e-04
1wfm_A	138	Synaptotagmin XIII; C2 domain, exocytosis, neurotr	6e-05
2enp_A	147	B/K protein; C2 type 1,beta sandwich, structural g	7e-05
1rsy_A	152	Synaptotagmin I; calcium/phospholipid binding prot	1e-04
2cjt_A	131	UNC-13 homolog A, MUNC13-1; phorbol-ester binding,	1e-04
2d8k_A	141	Synaptotagmin VII; exocytosis, calcium binding, ly	1e-04
3dzy_A	467	Retinoic acid receptor RXR-alpha; DNA-binding, HOS	2e-04
2q3x_A	171	Regulating synaptic membrane exocytosis protein 1;	4e-04
3n5a_A	138	Synaptotagmin-7; calcium/phospholipid binding prot	4e-04
1w15_A	153	Synaptotagmin IV; metal binding protein, endocytos	4e-04
2b3r_A	134	Phosphatidylinositol-4-phosphate 3-kinase C2 DOMA	4e-04
2cm5_A	166	Rabphilin-3A; protein transport, zinc-finger, Ca2+	4e-04
1tjx_A	159	Similar to synaptotagmini/P65; C2B domain, calcium	6e-04
3bxj_A	483	RAS GTPase-activating protein syngap; GTPase activ	7e-04

>2fk9_A Protein kinase C, ETA type; ATP-binding, metal-binding, nucleotide-binding, diacylglycerol binding, serine/threonine-protein kinase, transferase; 1.75A {Homo sapiens} Length = 157

 Score = 71.9 bits (176), Expect = 1e-15
 Identities = 33/152 (21%), Positives = 50/152 (32%), Gaps = 21/152 (13%)

Query: 8   SSHSHMSSPITHDLEITIICAKHLKNVNWRNGGDLK--------PYVVFYVDPAYRLATQ 59
            S S  +      L + I  A  L+   W     L         PY+   VD      T 
Sbjct: 18  GSMSSGTMKFNGYLRVRIGEAVGLQPTRWSLRHSLFKKGHQLLDPYLTVSVDQVRVGQTS 77

Query: 60  SDDSGSTRPVWNERFTLPITHSVRESVLTLEIFHSKLSETPKPLVGSVKFPLAHLVDSDS 119
           +    + +P +NE F   +T       L L +FH          V +       L+ +  
Sbjct: 78  T-KQKTNKPTYNEEFCANVT---DGGHLELAVFHETPL-GYDHFVANCTLQFQELLRTTG 132

Query: 120 SEPTQYV-RKLEVLRPSGRPQGKIRVKLVLNG 150
           +  T      LE       P+GK+ V + L G
Sbjct: 133 ASDTFEGWVDLE-------PEGKVFVVITLTG 157

>1gmi_A Protein kinase C, epsilon type; PKC, C2 domain, X-RAY, phospholipids, PKC epsilon.; 1.7A {Rattus rattus} SCOP: b.7.1.1 Length = 136

 Score = 69.1 bits (169), Expect = 1e-14
 Identities = 30/139 (21%), Positives = 49/139 (35%), Gaps = 22/139 (15%)

Query: 21  LEITIICAKHLKNVNW---------RNGGDLKPYVVFYVDPAYRLATQSDDSGSTRPVWN 71
           L+I I  A  LK   W              L PY+   VD   R+   +    +  P W+
Sbjct: 8   LKIKICEAVSLKPTAWSLRDAVGPRPQTFLLDPYIALNVDD-SRIGQTATKQKTNSPAWH 66

Query: 72  ERFTLPITHSVRESVLTLEIFHSKLSETPKPLVGSVKFPLAHLVDSDSSEPTQYVRKLEV 131
           + F   +        + L +FH          V +       L+ + S     ++  LE 
Sbjct: 67  DEFVTDVC---NGRKIELAVFHDAPI-GYDDFVANCTIQFEELLQNGSRHFEDWI-DLE- 120

Query: 132 LRPSGRPQGKIRVKLVLNG 150
                 P+GK+ V + L+G
Sbjct: 121 ------PEGKVYVIIDLSG 133

>2nq3_A Itchy homolog E3 ubiquitin protein ligase; C2 domain, UBL conjugation pathway, structural genomics consortium, SGC; 1.80A {Homo sapiens} SCOP: b.7.1.1 Length = 173

 Score = 68.4 bits (167), Expect = 3e-14
 Identities = 31/159 (19%), Positives = 60/159 (37%), Gaps = 13/159 (8%)

Query: 1   MTTAALNSSHSHMSSPITHDLEITIICAKHLKNVNWRNGGDLKPYVVFYVDPA-YRLATQ 59
           M+ +         S  +   L+IT+I AK  +N   +N     PYV   VD    +    
Sbjct: 19  MSDSGSQLGSMG-SLTMKSQLQITVISAKLKENK--KNWFGPSPYVEVTVDGQSKKTEKC 75

Query: 60  SDDSGSTRPVWNERFTLPITHSVRESVLTLEIF-HSKLSETPKPLVGSVKFPLAHLVDSD 118
           +    +  P W +  T+ +T     S L   ++ H  L      L+G+    +   + S+
Sbjct: 76  N---NTNSPKWKQPLTVIVT---PVSKLHFRVWSHQTLKS--DVLLGTAALDIYETLKSN 127

Query: 119 SSEPTQYVRKLEVLRPSGRPQGKIRVKLVLNGRPLPPPS 157
           + +  + V  L++       +    + + L+G  L    
Sbjct: 128 NMKLEEVVVTLQLGGDKEPTETIGDLSICLDGLQLESEV 166

>1wfj_A Putative elicitor-responsive gene; C2 domain, riken structural genomics/proteomics initiative, RSGI, structural genomics, plant protein; NMR {Arabidopsis thaliana} SCOP: b.7.1.2 Length = 136

 Score = 67.4 bits (165), Expect = 4e-14
 Identities = 32/127 (25%), Positives = 50/127 (39%), Gaps = 13/127 (10%)

Query: 21  LEITIICAKHLKNVNWRNGGDLKPYVVFYVDPAYRLATQSDDSGSTRPVWNERFTLPITH 80
           LE+ ++ AK L++ ++ N  D  PYV           +   +   T P WNE F   ++ 
Sbjct: 12  LEVVLVSAKGLEDADFLNNMD--PYVQLTCRTQ-DQKSNVAEGMGTTPEWNETFIFTVSE 68

Query: 81  SVRESVLTLEIF-HSKLSETPKPLVGSVKFPLAHLVDSDSSEPTQYVRKLEVLRPSGRPQ 139
               + L  +IF     +E     VG    PL  +    S  PT Y      +      +
Sbjct: 69  --GTTELKAKIFDKDVGTED--DAVGEATIPLEPVFVEGSIPPTAY-----NVVKDEEYK 119

Query: 140 GKIRVKL 146
           G+I V L
Sbjct: 120 GEIWVAL 126

>3pyc_A E3 ubiquitin-protein ligase smurf1; phospholipid binding, membrane associate, lipid binding PROT; 1.96A {Homo sapiens} PDB: 2jqz_A Length = 132

 Score = 59.7 bits (145), Expect = 2e-11
 Identities = 25/141 (17%), Positives = 50/141 (35%), Gaps = 23/141 (16%)

Query: 16  PITHDLEITIICAKHLKNVNWRNGG-DLKPYVVFYVDPAYRLATQSDDSGSTR------- 67
                + +T++CAK+L   +      D  P+    VD        S    ST        
Sbjct: 2   SEFIKIRLTVLCAKNLAKKD-FFRLPD--PFAKIVVDG-------SGQCHSTDTVKNTLD 51

Query: 68  PVWNERFTLPITHSVRESVLTLEIF-HSKLSE-TPKPLVGSVKFPLAHLVDSDSSEPTQY 125
           P WN+ + L +    +   +T+ ++ H K+ +      +G V+     +     +   + 
Sbjct: 52  PKWNQHYDLYVG---KTDSITISVWNHKKIHKKQGAGFLGCVRLLSNAISRLKDTGYQRL 108

Query: 126 VRKLEVLRPSGRPQGKIRVKL 146
                    +   +G+I V L
Sbjct: 109 DLCKLNPSDTDAVRGQIVVSL 129

>2ep6_A MCTP2 protein; beta sandwich, Ca2+ binding, membrane binding, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.7.1.1 Length = 133

 Score = 57.3 bits (139), Expect = 1e-10
 Identities = 32/149 (21%), Positives = 55/149 (36%), Gaps = 31/149 (20%)

Query: 7   NSSHSHMSSPITHDLEITIICAKHLKNVNWRNGG-DLKPYVVFYVDPAYRLATQSDDSGS 65
           +S  S     +   L++ ++ A  L   +  +G  D  P+ +  +          +D   
Sbjct: 2   SSGSSGDVKDV-GILQVKVLKAADLLAAD-FSGKSD--PFCLLELG---------NDRLQ 48

Query: 66  TR-------PVWNERFTLPITHSVRESVLTLEIF-HSKLSETPKPLVGSVKFPLAHLVDS 117
           T        P WN+ FT PI       VL + +F        P   +G V  PL  + D 
Sbjct: 49  THTVYKNLNPEWNKVFTFPIKDI--HDVLEVTVFDEDGDK--PPDFLGKVAIPLLSIRD- 103

Query: 118 DSSEPTQYVRKLEVLRPSGRPQGKIRVKL 146
              +P  YV  L+        +G I +++
Sbjct: 104 --GQPNCYV--LKNKDLEQAFKGVIYLEM 128

>3b7y_A E3 ubiquitin-protein ligase NEDD4; C2 domain, UBL-conjugation pathway, structural genomics consortium, SGC, cytoplasm; 1.80A {Homo sapiens} PDB: 2nsq_A Length = 153

 Score = 54.4 bits (131), Expect = 2e-09
 Identities = 31/140 (22%), Positives = 46/140 (32%), Gaps = 20/140 (14%)

Query: 21  LEITIICAKHLKNVNWRNGG-DLKPYVVFYVDPAYRLATQSDDSGSTR-------PVWNE 72
           + + +I    L   +   G  D  PYV   +         S     T+       P WNE
Sbjct: 22  VRVRVIAGIGLAKKD-ILGASD--PYVRVTLYDPMNGVLTS---VQTKTIKKSLNPKWNE 75

Query: 73  RFTLPITHSVRESVLTLEIFHSKLSETPKPLVGSVKFPLAHLVDSDSSEPTQYVRKLEVL 132
                +    ++  L  E+F          L G V  PL  L   +      Y  K  VL
Sbjct: 76  EILFRVHP--QQHRLLFEVFDENRLTRDDFL-GQVDVPLYPLPTENPRLERPYTFKDFVL 132

Query: 133 RPS---GRPQGKIRVKLVLN 149
            P     R +G +R+K+   
Sbjct: 133 HPRSHKSRVKGYLRLKMTYL 152

>3m7f_B E3 ubiquitin-protein ligase NEDD4; C2 domain, GRB10, SH2 domain, phosphoprotein, conjugation pathway, signaling protein-ligase complex; 2.00A {Mus musculus} Length = 176

 Score = 54.1 bits (130), Expect = 4e-09
 Identities = 31/143 (21%), Positives = 45/143 (31%), Gaps = 20/143 (13%)

Query: 18  THDLEITIICAKHLKNVNWRNGG-DLKPYVVFYVDPAYRLATQSDDSGSTR-------PV 69
           T  + + +I    L   +   G  D  PYV   +         S     T+       P 
Sbjct: 7   TRVVRVKVIAGIGLAKKD-ILGASD--PYVRVTLYDPMSGILTS---VQTKTIKKSLNPK 60

Query: 70  WNERFTLPITHSVRESVLTLEIFHSKLSETPKPLVGSVKFPLAHLVDSDSSEPTQYVRKL 129
           WNE     +        +  E+F          L G V  PL  L   +      Y  K 
Sbjct: 61  WNEEILFRVLPQ--RHRILFEVFDENRLTRDDFL-GQVDVPLYPLPTENPRMERPYTFKD 117

Query: 130 EVLRP---SGRPQGKIRVKLVLN 149
            VL P     R +G +R+K+   
Sbjct: 118 FVLHPRSHKSRVKGYLRLKMTYL 140

>3fbk_A RGS3, RGP3, regulator of G-protein signaling 3; all beta-sheet fold, structural genomics, PSI-2, protein structure initiative; 2.00A {Homo sapiens} Length = 153

 Score = 52.4 bits (126), Expect = 1e-08
 Identities = 22/115 (19%), Positives = 39/115 (33%), Gaps = 22/115 (19%)

Query: 15  SPITHDLEITIICAKHLKNVNWRNGGDLKPYVVFYVDPAYRLATQSDDSGSTR------- 67
                 L + II  K L +   +  G   PYV   + P        +DS           
Sbjct: 23  DAQDRVLLLHIIEGKGLIS---KQPGTCDPYVKISLIP--------EDSRLRHQKTQTVP 71

Query: 68  ----PVWNERFTLPITHSVRESVLTLEIFHSKLSETPKPLVGSVKFPLAHLVDSD 118
               P ++E F  P+     +  L + +++         L+G + F +  L+  D
Sbjct: 72  DCRDPAFHEHFFFPVQEEDDQKRLLVTVWNRASQSRQSGLIGCMSFGVKSLLTPD 126

>1rlw_A Phospholipase A2, CALB domain; hydrolase, C2 domain; 2.40A {Homo sapiens} SCOP: b.7.1.1 Length = 126

 Score = 51.6 bits (124), Expect = 1e-08
 Identities = 20/144 (13%), Positives = 46/144 (31%), Gaps = 35/144 (24%)

Query: 18  THDLEITIICAKHLKNVNWRN-GGDLKPYVVFYVDPAYRLATQSDDSGSTR-------PV 69
           +H   + ++ A  +    + +      PYV  ++          D    TR       PV
Sbjct: 2   SHKFTVVVLRATKVTKGAFGDMLDTPDPYVELFISTT------PDSRKRTRHFNNDINPV 55

Query: 70  WNERFTLPITHSVRESVLTLEIF------HSKLSETPKPLVGSVKFPLAHLVDSDSSEPT 123
           WNE F   +    +E+VL + +          L        G+  F ++ +      +  
Sbjct: 56  WNETFEFIL-DPNQENVLEITLMDANYVMDETL--------GTATFTVSSM------KVG 100

Query: 124 QYVRKLEVLRPSGRPQGKIRVKLV 147
           +      +         ++ +++ 
Sbjct: 101 EKKEVPFIFNQVTEMVLEMSLEVA 124

>3kwu_A MUNC13-1; calcium binding protein, phospholipid binding protein, metal binding protein; HET: GOL; 1.37A {Rattus norvegicus} PDB: 3kwt_A* Length = 148

 Score = 50.2 bits (120), Expect = 5e-08
 Identities = 27/152 (17%), Positives = 48/152 (31%), Gaps = 22/152 (14%)

Query: 8   SSHSHMSSPITHDLEITIICAKHLKNVNWRNGGDLKPYVVFYVDPAYRLATQSDDSGSTR 67
           S     S      + IT++CA+ L+  +    G   PYV   V    +  T++   G+  
Sbjct: 7   SVLDGTSKWSAK-ISITVVCAQGLQAKD--KTGSSDPYVTVQVGK-TKKRTKTIY-GNLN 61

Query: 68  PVWNERFTLPITHSVRESVLTLEIFHSKLSETPKP----------LVGSVKFPLAHLVDS 117
           PVW E F     +S     + + +         +            +G     +  L   
Sbjct: 62  PVWEENFHFECHNS--SDRIKVRVLDEDDDIKSRVKQRFKRESDDFLGQTIIEVRTLS-- 117

Query: 118 DSSEPTQYVRKLEVLRPSGRPQGKIRVKLVLN 149
                  Y   L+         G IR+ + + 
Sbjct: 118 -GEMDVWY--NLDKRTDKSAVSGAIRLHISVE 146

>2dmh_A Myoferlin; beta-sandwich, FER-1-like protein 3, muscular dystrophy, cardiomyopathy, membrane fusion, dystrophin, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 140

 Score = 48.9 bits (117), Expect = 1e-07
 Identities = 24/148 (16%), Positives = 40/148 (27%), Gaps = 31/148 (20%)

Query: 21  LEITIICAKHLKNVNWRNGGDLKPYVVFYVDPAYRLATQSDDSGSTR-------PVWNER 73
           L + +  A ++        G   P V              D+   T+       PVWNE 
Sbjct: 9   LRVIVESASNIPK---TKFGKPDPIVSVIF---------KDEKKKTKKVDNELNPVWNEI 56

Query: 74  FTLPITHSVRE--SVLTLEIFHSKLSETPKP--LVGSVKFPLAHLVDSDSSEPTQYVRKL 129
               +     +  S L + +      ET     L+G+    L  L    S          
Sbjct: 57  LEFDLRGIPLDFSSSLGIIVKD---FETIGQNKLIGTATVALKDLTGDQSRSLP-----Y 108

Query: 130 EVLRPSGRPQGKIRVKLVLNGRPLPPPS 157
           +++             + L     PP  
Sbjct: 109 KLISLLNEKGQDTGATIDLVIGYDPPSG 136

>2r83_A Synaptotagmin-1; C2A-C2B, exocytosis, calcium, cell junction, cytoplasmic vesicle, glycoprotein, lipoprotein, membrane, metal-binding palmitate; 2.70A {Homo sapiens} SCOP: b.7.1.2 Length = 284

 Score = 49.0 bits (117), Expect = 6e-07
 Identities = 26/135 (19%), Positives = 51/135 (37%), Gaps = 9/135 (6%)

Query: 15  SPITHDLEITIICAKHLKNVNWRNGGDLKPYVVFYVDPAYRLATQSD-DSGSTRPVWNER 73
               + L + II A  L       GG   PYV  ++ P  +   ++     +  PV+NE+
Sbjct: 15  DFQNNQLLVGIIQAAELPA--LDMGGTSDPYVKVFLLPDKKKKFETKVHRKTLNPVFNEQ 72

Query: 74  FTLPITHS-VRESVLTLEIFHS-KLSETPKPLVGSVKFPLAHLVDSDSSEPTQYVRKLEV 131
           FT  + +S +    L + ++   + S+    ++G  K P+  +         ++      
Sbjct: 73  FTFKVPYSELAGKTLVMAVYDFDRFSK--HDIIGEFKVPMNTV--DFGHVTEEWRDLQSA 128

Query: 132 LRPSGRPQGKIRVKL 146
            +      G I   L
Sbjct: 129 EKEEQEKLGDICFSL 143

>2r83_A Synaptotagmin-1; C2A-C2B, exocytosis, calcium, cell junction, cytoplasmic vesicle, glycoprotein, lipoprotein, membrane, metal-binding palmitate; 2.70A {Homo sapiens} SCOP: b.7.1.2 Length = 284

 Score = 40.6 bits (95), Expect = 3e-04
 Identities = 18/105 (17%), Positives = 39/105 (37%), Gaps = 7/105 (6%)

Query: 11  SHMSSPITHDLEITIICAKHLKNVNWRNGGDLKPYVVFYVDPAYRLATQSDDS---GSTR 67
           S    P    L + I+ AK+LK ++     D  PYV  ++    +   +   +    +  
Sbjct: 142 SLRYVPTAGKLTVVILEAKNLKKMDVGGLSD--PYVKIHLMQNGKRLKKKKTTIKKNTLN 199

Query: 68  PVWNERFTLPITHS-VRESVLTLEIFHSKLSETPKPLVGSVKFPL 111
           P +NE F+  +    +++  + + +            +G V    
Sbjct: 200 PYYNESFSFEVPFEQIQKVQVVVTVLDYDKI-GKNDAIGKVFVGY 243

>1dqv_A Synaptotagmin III; beta sandwich, calcium ION, C2 domain, endocytosis/exocytosis complex; 3.20A {Rattus rattus} SCOP: b.7.1.2 b.7.1.2 PDB: 3hn8_A Length = 296

 Score = 48.3 bits (115), Expect = 1e-06
 Identities = 25/156 (16%), Positives = 51/156 (32%), Gaps = 20/156 (12%)

Query: 15  SPITHDLEITIICAKHLKNVNWRNGGDLKPYVVFYVDPAYRLATQSD-DSGSTRPVWNER 73
              +  L + I+ A  L   +  + G   PYV  Y+ P  +   Q+     +  P++NE 
Sbjct: 16  LYGSDQLVVRILQALDLPAKD--SNGFSDPYVKIYLLPDRKKKFQTKVHRKTLNPIFNET 73

Query: 74  FTLPITHS-VRESVLTLEIFHS-KLSETPKPLVGSVKFPLAHLVDSDSSEPTQYVRKLEV 131
           F   +  + + +  L   ++   + S     L+G V      L  ++        R +  
Sbjct: 74  FQFSVPLAELAQRKLHFSVYDFDRFSR--HDLIGQVVLD-NLLELAEQPPDRPLWRDILE 130

Query: 132 LRPSGRPQGKIRVKL------------VLNGRPLPP 155
                   G++   L            ++    L  
Sbjct: 131 GGSEKADLGELNFSLCYLPTAGLLTVTIIKASNLKA 166

>1dqv_A Synaptotagmin III; beta sandwich, calcium ION, C2 domain, endocytosis/exocytosis complex; 3.20A {Rattus rattus} SCOP: b.7.1.2 b.7.1.2 PDB: 3hn8_A Length = 296

 Score = 44.1 bits (104), Expect = 3e-05
 Identities = 20/101 (19%), Positives = 35/101 (34%), Gaps = 7/101 (6%)

Query: 15  SPITHDLEITIICAKHLKNVNWRNGGDLKPYVVFYVDPAYRLATQ---SDDSGSTRPVWN 71
            P    L +TII A +LK ++     D  PYV   +    R   +   S    +  P +N
Sbjct: 148 LPTAGLLTVTIIKASNLKAMDLTGFSD--PYVKASLISEGRRLKKRKTSIKKNTLNPTYN 205

Query: 72  ERFTLPITHS-VRESVLTLEIFHSKLSETPKPLVGSVKFPL 111
           E     +    V    L++ +           ++G  +   
Sbjct: 206 EALVFDVAPESVENVGLSIAVVD-YDCIGHNEVIGVCRVGP 245

>2dmg_A KIAA1228 protein; beta-sandwich, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 142

 Score = 46.2 bits (110), Expect = 1e-06
 Identities = 25/120 (20%), Positives = 44/120 (36%), Gaps = 24/120 (20%)

Query: 15  SPITHDLEITIICAKHLKNVNWRNGGDLKPYVVFYVDPAYRLATQSDDSGSTR------- 67
           S   + L + +   ++L   +  +G D  PYV  Y+ P        D   S R       
Sbjct: 20  SSQRNKLIVVVHACRNLIAFS-EDGSD--PYVRMYLLP--------DKRRSGRRKTHVSK 68

Query: 68  ----PVWNERFTLPITHS-VRESVLTLEIFHS-KLSETPKPLVGSVKFPLAHLVDSDSSE 121
               PV+++ F   ++   V+   L + + +S       K L+G V   LA    +    
Sbjct: 69  KTLNPVFDQSFDFSVSLPEVQRRTLDVAVKNSGGFLSKDKGLLGKVLVALASEELAKGWT 128

>1a25_A CALB, protein kinase C (beta); calcium++/phospholipid binding protein, calcium-binding protein; HET: PSE; 2.70A {Rattus norvegicus} SCOP: b.7.1.2 Length = 149

 Score = 46.2 bits (110), Expect = 1e-06
 Identities = 24/115 (20%), Positives = 45/115 (39%), Gaps = 22/115 (19%)

Query: 18  THDLEITIICAKHLKNVNWRNGGDLKPYVVFYVDPAYRLATQSDDSGSTR---------- 67
              L + +  AK+L  ++     D  PYV   + P        D    ++          
Sbjct: 30  REVLIVVVRDAKNLVPMDPNGLSD--PYVKLKLIP--------DPKSESKQKTKTIKCSL 79

Query: 68  -PVWNERFTLPITHSVRESVLTLEIFHSKLSETPKPLVGSVKFPLAHLVDSDSSE 121
            P WNE F   +  S ++  L++EI+   L+ +    +GS+ F ++ L  +    
Sbjct: 80  NPEWNETFRFQLKESDKDRRLSVEIWDWDLT-SRNDFMGSLSFGISELQKAGVDG 133

>3fdw_A Synaptotagmin-like protein 4; structural genomics, phospholipid binding, alternative splicing, cell membrane, cytoplasmic vesicle, membrane; 2.20A {Homo sapiens} Length = 148

 Score = 45.4 bits (108), Expect = 3e-06
 Identities = 18/130 (13%), Positives = 37/130 (28%), Gaps = 29/130 (22%)

Query: 15  SPITHDLEITIICAKHLKNVNWRNGG-DLKPYVVFYVDPAYRLATQSDDSGSTR------ 67
              T  L + +     L   +      +  PYV  Y+ P        D S   +      
Sbjct: 19  EQQTQSLVVHVKECHQLAYADEAKKRSN--PYVKTYLLP--------DKSRQGKRKTSIK 68

Query: 68  -----PVWNERFTLPITHS-VRESVLTLEIFHS-KLSETPKPLVGSVKFPLAHLVDSDSS 120
                P+++E     I  S + +  L   ++H  +        +G  +  +         
Sbjct: 69  RDTVNPLYDETLRYEIPESLLAQRTLQFSVWHHGRFGR--NTFLGEAEIQMDSW---KLD 123

Query: 121 EPTQYVRKLE 130
           +   +   L 
Sbjct: 124 KKLDHCLPLH 133

>2bwq_A Regulating synaptic membrane exocytosis protein 2; C2 domain, neurotransmitter release, transport protein; 1.41A {Rattus norvegicus} SCOP: b.7.1.2 Length = 129

 Score = 44.2 bits (105), Expect = 4e-06
 Identities = 27/121 (22%), Positives = 44/121 (36%), Gaps = 24/121 (19%)

Query: 15  SPITHDLEITIICAKHLKNVNWRNGGDLKPYVVFYVDPAYRLATQSDDSGSTR------- 67
             + H L +TI+ AK L +    +G    PYV  Y  P        D S   +       
Sbjct: 14  DKVGHQLIVTILGAKDLPSRE--DGRPRNPYVKIYFLP--------DRSDKNKRRTKTVK 63

Query: 68  ----PVWNERFT-LPITHS-VRESVLTLEIFHS-KLSETPKPLVGSVKFPLAHLVDSDSS 120
               P WN+ F   P+     RE +L + ++   ++ E     +G +   L   +  D  
Sbjct: 64  KTLEPKWNQTFIYSPVHRREFRERMLEITLWDQARVREEESEFLGEILIELETALLDDEP 123

Query: 121 E 121
            
Sbjct: 124 H 124

>1v27_A Regulating synaptic membrane exocytosis protein 2; RAB3-interacting molecule, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.7.1.2 Length = 141

 Score = 43.8 bits (104), Expect = 8e-06
 Identities = 27/121 (22%), Positives = 44/121 (36%), Gaps = 24/121 (19%)

Query: 15  SPITHDLEITIICAKHLKNVNWRNGGDLKPYVVFYVDPAYRLATQSDDSGSTR------- 67
             + H L +TI+ AK L +    +G    PYV  Y  P        D S   +       
Sbjct: 17  DKVGHQLIVTILGAKDLPSRE--DGRPRNPYVKIYFLP--------DRSDKNKRRTKTVK 66

Query: 68  ----PVWNERFT-LPITHS-VRESVLTLEIFHS-KLSETPKPLVGSVKFPLAHLVDSDSS 120
               P WN+ F   P+     RE +L + ++   ++ E     +G +   L   +  D  
Sbjct: 67  KTLEPKWNQTFIYSPVHRREFRERMLEITLWDQARVREEESEFLGEILIELETALLDDEP 126

Query: 121 E 121
            
Sbjct: 127 H 127

>2z0u_A WW domain-containing protein 1; C2 domain, alternative splicing, coiled coil, cytoplasm, phosphorylation, polymorphism, lipid binding protein; 2.20A {Homo sapiens} Length = 155

 Score = 43.9 bits (104), Expect = 9e-06
 Identities = 18/118 (15%), Positives = 37/118 (31%), Gaps = 26/118 (22%)

Query: 15  SPITHDLEITIICAKHLKNVNWRNGGDLKPYVVFYVDPAYRLATQSDDSGSTR------- 67
                   I II   +L  +      D K  +   V P            +T        
Sbjct: 39  DEKNKQFAILIIQLSNLSALL--QQQDQKVNIRVAVLP--------CSESTTCLFRTRPL 88

Query: 68  -----PVWNERFTLPITHS-VRESVLTLEIFH-SKLSETPKPLVGSVKFPLAHLVDSD 118
                 V+NE F + +++  + +  L +++    +     +  +G  +  LA +  S 
Sbjct: 89  DASDTLVFNEVFWVSMSYPALHQKTLRVDVCTTDRSHL--EECLGGAQISLAEVCRSG 144

>1ugk_A Synaptotagmin IV, KIAA1342; beta sandwich, structural genomics, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Homo sapiens} SCOP: b.7.1.2 Length = 138

 Score = 43.5 bits (103), Expect = 1e-05
 Identities = 21/108 (19%), Positives = 43/108 (39%), Gaps = 7/108 (6%)

Query: 15  SPITHDLEITIICAKHLKNVNWRNGGDLKPYVVFYVDPAYRLATQSDDSGSTR-PVWNER 73
           +       + I  A+ L  ++        PY+   + P  +   ++     T  P ++E 
Sbjct: 18  NFERKAFVVNIKEARGLPAMD-EQSMTSDPYIKMTILPEKKHKVKTRVLRKTLDPAFDET 76

Query: 74  FTL-PITHS-VRESVLTLEIFHS-KLSETPKPLVGSVKFPLAHLVDSD 118
           FT   I ++ ++E  L   I    + S     ++G V  PL+ +  S+
Sbjct: 77  FTFYGIPYTQIQELALHFTILSFDRFSR--DDIIGEVLIPLSGIELSE 122

>2chd_A Rabphilin-3A, exophilin-1; C2 domain, C2A, calcium binding, synaptic EXOC metal-binding, protein transport, synapse, transport, zinc-; 1.92A {Rattus norvegicus} PDB: 2k3h_A Length = 142

 Score = 43.1 bits (102), Expect = 1e-05
 Identities = 30/130 (23%), Positives = 47/130 (36%), Gaps = 29/130 (22%)

Query: 15  SPITHDLEITIICAKHLKNVNWRNGGDLKPYVVFYVDPAYRLATQSDDSGSTR------- 67
                +L+ TII AK LK ++     D  PYV  ++ P          S S +       
Sbjct: 25  DQDNSNLQCTIIRAKGLKPMDSNGLAD--PYVKLHLLP--------GASKSNKLRTKTLR 74

Query: 68  ----PVWNERFT-LPITHS-VRESVLTLEIFHS-KLSETPKPLVGSVKFPLAHLVDSDSS 120
               PVWNE      IT   ++   L + +    K        +G  +F L  L    ++
Sbjct: 75  NTRNPVWNETLQYHGITEEDMQRKTLRISVCDEDKFGH--NEFIGETRFSLKKL---KAN 129

Query: 121 EPTQYVRKLE 130
           +   +   LE
Sbjct: 130 QRKNFNICLE 139

>3f04_A Synaptotagmin-1; C2A, calcium, cell junction, cytoplasmic vesicle, glycoprotein, lipoprotein, membrane, metal- binding, palmitate, phosphoprotein; 1.35A {Homo sapiens} PDB: 3f01_A 3f05_A 3f00_A 1byn_A 2k45_A 2k4a_A 2k8m_A 2ki6_A* Length = 143

 Score = 43.1 bits (102), Expect = 2e-05
 Identities = 27/128 (21%), Positives = 49/128 (38%), Gaps = 28/128 (21%)

Query: 15  SPITHDLEITIICAKHLKNVNWRNGGDLKPYVVFYVDPAYRLATQSDDSGSTR------- 67
               + L + II A  L  ++     D  PYV  ++ P         D            
Sbjct: 30  DFQNNQLLVGIIQAAELPALDMGGTSD--PYVKVFLLP---------DKKKKFETKVHRK 78

Query: 68  ---PVWNERFTLPITHS-VRESVLTLEIFHS-KLSETPKPLVGSVKFPLAHLVDSDSSEP 122
              PV+NE+FT  + +S +    L + ++   + S+    ++G  K P+  +   D    
Sbjct: 79  TLNPVFNEQFTFKVPYSELGGKTLVMAVYDFDRFSK--HDIIGEFKVPMNTV---DFGHV 133

Query: 123 TQYVRKLE 130
           T+  R L+
Sbjct: 134 TEEWRDLQ 141

>3h0g_A DNA-directed RNA polymerase II subunit RPB1; transcription, multi-protein complex, DNA- binding, magnesium; 3.65A {Schizosaccharomyces pombe} Length = 1752

 Score = 45.5 bits (107), Expect = 2e-05
 Identities = 29/102 (28%), Positives = 39/102 (38%), Gaps = 11/102 (10%)

Query: 171  YSAPPPPFPPPSRDYSYYPSYYTPQPPA---------PPRPLFSRASSYSLPSGSLSVPS 221
            YSA  P + P S  YS     Y+P  P+         P  P +S  S    P+     P+
Sbjct: 1606 YSATSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPT 1665

Query: 222  APVDFSPSQDYKQPPLP-PQPRASGYGVPSGSGPSAPVDYSP 262
            +P  +SP+     P  P   P +  Y   S S       YSP
Sbjct: 1666 SP-SYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSP 1706

>3h0g_A DNA-directed RNA polymerase II subunit RPB1; transcription, multi-protein complex, DNA- binding, magnesium; 3.65A {Schizosaccharomyces pombe} Length = 1752

 Score = 41.2 bits (96), Expect = 3e-04
 Identities = 30/103 (29%), Positives = 42/103 (40%), Gaps = 13/103 (12%)

Query: 171  YSAPPPPFPPPSRDYSYYPSYYTPQPPA---------PPRPLFSRASSYSLPSGSLSVPS 221
            YS   P + P S  YS     Y+P  P+         P  P +S  S    P+     P+
Sbjct: 1627 YSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPT 1686

Query: 222  APVDFSPSQDYKQPPLPP-QPRASGYGVPSGS-GPSAPVDYSP 262
            +P  +SP+     P  P   P +  Y   S S  P++P  YSP
Sbjct: 1687 SP-SYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPS-YSP 1727

>1m2v_B SEC24, protein transport protein SEC24, SEC24P, SEC24 protein, abnormal nuclear; zinc-finger, beta barrel, VWA domain, gelsolin domain,; 2.75A {Saccharomyces cerevisiae} SCOP: a.71.2.1 b.2.8.1 c.62.1.2 d.109.2.1 g.41.10.1 Length = 926

 Score = 44.0 bits (103), Expect = 4e-05
 Identities = 18/117 (15%), Positives = 30/117 (25%)

Query: 149 NGRPLPPPSQDYQSVPDFGHYYYSAPPPPFPPPSRDYSYYPSYYTPQPPAPPRPLFSRAS 208
           N  PL  P+Q                    P  +        + TP      + +    +
Sbjct: 19  NATPLQQPAQFMPPQDPAAAGMSYGQMGMPPQGAVPSMGQQQFLTPAQEQLHQQIDQATT 78

Query: 209 SYSLPSGSLSVPSAPVDFSPSQDYKQPPLPPQPRASGYGVPSGSGPSAPVDYSPYDQ 265
           S +           P  +   Q   Q   P Q +      P+   PSA +  +    
Sbjct: 79  SMNDMHLHNVPLVDPNAYMQPQVPVQMGTPLQQQQQPMAAPAYGQPSAAMGQNMRPM 135

>1m2v_B SEC24, protein transport protein SEC24, SEC24P, SEC24 protein, abnormal nuclear; zinc-finger, beta barrel, VWA domain, gelsolin domain,; 2.75A {Saccharomyces cerevisiae} SCOP: a.71.2.1 b.2.8.1 c.62.1.2 d.109.2.1 g.41.10.1 Length = 926

 Score = 40.6 bits (94), Expect = 5e-04
 Identities = 13/114 (11%), Positives = 21/114 (18%)

Query: 152 PLPPPSQDYQSVPDFGHYYYSAPPPPFPPPSRDYSYYPSYYTPQPPAPPRPLFSRASSYS 211
           P         + P      +  P  P                  P    +   + A    
Sbjct: 10  PQAQLQYGQNATPLQQPAQFMPPQDPAAAGMSYGQMGMPPQGAVPSMGQQQFLTPAQEQL 69

Query: 212 LPSGSLSVPSAPVDFSPSQDYKQPPLPPQPRASGYGVPSGSGPSAPVDYSPYDQ 265
                 +  S       +     P    QP+              P+    Y Q
Sbjct: 70  HQQIDQATTSMNDMHLHNVPLVDPNAYMQPQVPVQMGTPLQQQQQPMAAPAYGQ 123

>1m2v_B SEC24, protein transport protein SEC24, SEC24P, SEC24 protein, abnormal nuclear; zinc-finger, beta barrel, VWA domain, gelsolin domain,; 2.75A {Saccharomyces cerevisiae} SCOP: a.71.2.1 b.2.8.1 c.62.1.2 d.109.2.1 g.41.10.1 Length = 926

 Score = 40.2 bits (93), Expect = 7e-04
 Identities = 15/127 (11%), Positives = 24/127 (18%), Gaps = 4/127 (3%)

Query: 152 PLPPPSQDYQSVPDFGHYYYSAPPPPFPPPSRDYSYYPSYYTPQPPAPPRPLFSRASSYS 211
                S     +P  G            P            T                  
Sbjct: 36  AAAGMSYGQMGMPPQGAVPSMGQQQFLTPAQEQLHQQIDQATTSMNDMHLH----NVPLV 91

Query: 212 LPSGSLSVPSAPVDFSPSQDYKQPPLPPQPRASGYGVPSGSGPSAPVDYSPYDQKLQKQF 271
            P+  +         +P Q  +QP   P        +     P   +       +L    
Sbjct: 92  DPNAYMQPQVPVQMGTPLQQQQQPMAAPAYGQPSAAMGQNMRPMNQLYPIDLLTELPPPI 151

Query: 272 GGLSLEE 278
             L+L  
Sbjct: 152 TDLTLPP 158

>1twf_A B220, DNA-directed RNA polymerase II largest subunit; transcription, mRNA, multiprotein complex; HET: UTP; 2.30A {Saccharomyces cerevisiae} SCOP: e.29.1.2 PDB: 1i3q_A 1i6h_A 1k83_A* 1nik_A 1nt9_A 1pqv_A 1r5u_A 1r9s_A* 1r9t_A* 1sfo_A* 1twa_A* 1twc_A* 1i50_A* 1twg_A* 1twh_A* 1wcm_A 1y1v_A 1y1w_A 1y1y_A 1y77_A* ... Length = 1733

 Score = 43.9 bits (103), Expect = 6e-05
 Identities = 28/99 (28%), Positives = 38/99 (38%), Gaps = 4/99 (4%)

Query: 170  YYSAPPPPFPPPSRDYSYYPSYYTPQPPA--PPRPLFSRASSYSLPSGSLSVPSAPVDFS 227
             YS   P + P S  YS     Y+P  P+  P  P +S  S    P+     P++P  +S
Sbjct: 1590 SYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSP-SYS 1648

Query: 228  PSQDYKQPPLPP-QPRASGYGVPSGSGPSAPVDYSPYDQ 265
            P+     P  P   P +  Y   S S       YSP   
Sbjct: 1649 PTSPSYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSP 1687

>1twf_A B220, DNA-directed RNA polymerase II largest subunit; transcription, mRNA, multiprotein complex; HET: UTP; 2.30A {Saccharomyces cerevisiae} SCOP: e.29.1.2 PDB: 1i3q_A 1i6h_A 1k83_A* 1nik_A 1nt9_A 1pqv_A 1r5u_A 1r9s_A* 1r9t_A* 1sfo_A* 1twa_A* 1twc_A* 1i50_A* 1twg_A* 1twh_A* 1wcm_A 1y1v_A 1y1w_A 1y1y_A 1y77_A* ... Length = 1733

 Score = 41.2 bits (96), Expect = 4e-04
 Identities = 28/115 (24%), Positives = 39/115 (33%), Gaps = 2/115 (1%)

Query: 150  GRPLPPPSQDYQSVPDFGHYYYSAPPPPFPPPSRDYSYYPSYYTPQPPA--PPRPLFSRA 207
            G      +   ++   FG Y  +   P F   S  +S     Y+P  PA  P  P +S  
Sbjct: 1507 GFTAYGGADYGEATSPFGAYGEAPTSPGFGVSSPGFSPTSPTYSPTSPAYSPTSPSYSPT 1566

Query: 208  SSYSLPSGSLSVPSAPVDFSPSQDYKQPPLPPQPRASGYGVPSGSGPSAPVDYSP 262
            S    P+     P++P     S  Y        P +  Y   S S       YSP
Sbjct: 1567 SPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSP 1621

>1wfm_A Synaptotagmin XIII; C2 domain, exocytosis, neurotransmitter release, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: b.7.1.2 Length = 138

 Score = 41.2 bits (97), Expect = 6e-05
 Identities = 19/113 (16%), Positives = 32/113 (28%), Gaps = 29/113 (25%)

Query: 15  SPITHDLEITIICAKHLKNVNWRNGGDLKPYVVFYVDPAYRLATQSDDSGSTR------- 67
                +L +T + A         + G    YV   V            +GS         
Sbjct: 22  DCQKAELFVTRLEAVTS-----NHDGGCDCYVQGSVAN---------RTGSVEAQTALKK 67

Query: 68  ----PVWNERFTLPITHS-VRESVLTLEIFHS-KLSETPKPLVGSVKFPLAHL 114
                 W E   LP+    +  + LTL +    + S     + G ++  L   
Sbjct: 68  RQLHTTWEEGLVLPLAEEELPTATLTLTLRTCDRFSR--HSVAGELRLGLDGT 118

>2enp_A B/K protein; C2 type 1,beta sandwich, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 147

 Score = 41.3 bits (97), Expect = 7e-05
 Identities = 24/108 (22%), Positives = 45/108 (41%), Gaps = 10/108 (9%)

Query: 15  SPITHDLEITIICAKHL-----KNVNWRNGGDLKPYVVFYVDPAYRLATQSDDSGSTR-P 68
             + + L + +I A+ L      + + ++     PYV   + P  + + Q+     T+ P
Sbjct: 22  DLLHNHLTVRVIEARDLPPPISHDGSRQDMAHSNPYVKICLLPDQKNSKQTGVKRKTQKP 81

Query: 69  VWNERFTLPITHS-VRESVLTLEIFHS-KLSETPKPLVGSVKFPLAHL 114
           V+ ER+T  I     +   L L +    K S     ++G V  PL  +
Sbjct: 82  VFEERYTFEIPFLEAQRRTLLLTVVDFDKFSR--HCVIGKVSVPLCEV 127

>1rsy_A Synaptotagmin I; calcium/phospholipid binding protein; 1.90A {Rattus norvegicus} SCOP: b.7.1.2 Length = 152

 Score = 40.9 bits (96), Expect = 1e-04
 Identities = 27/119 (22%), Positives = 52/119 (43%), Gaps = 10/119 (8%)

Query: 15  SPITHDLEITIICAKHLKNVNWRNGGDLKPYVVFYVDPAYRLATQSDDSGSTR-PVWNER 73
               + L + II A  L  ++     D  PYV  ++ P  +   ++     T  PV+NE+
Sbjct: 38  DFQNNQLLVGIIQAAELPALDMGGTSD--PYVKVFLLPDKKKKFETKVHRKTLNPVFNEQ 95

Query: 74  FTLPITHS-VRESVLTLEIFHS-KLSETPKPLVGSVKFPLAHLVDSDSSEPTQYVRKLE 130
           FT  + +S +    L + ++   + S+    ++G  K P+  +   D    T+  R L+
Sbjct: 96  FTFKVPYSELGGKTLVMAVYDFDRFSK--HDIIGEFKVPMNTV---DFGHVTEEWRDLQ 149

>2cjt_A UNC-13 homolog A, MUNC13-1; phorbol-ester binding, neurotransmitter release, RIM, MUNC13 domains, exocytosis, metal-binding; 1.44A {Rattus norvegicus} SCOP: b.7.1.1 Length = 131

 Score = 40.3 bits (94), Expect = 1e-04
 Identities = 22/107 (20%), Positives = 41/107 (38%), Gaps = 12/107 (11%)

Query: 21  LEITIICAKHLKNVNWRNGGDLKPYVVFYVDPAYRLATQSDDSGSTRPVWNERFTLPITH 80
           L + +  AK               YV   V    +  T +     ++P W + F   I  
Sbjct: 7   LCVGVKKAKFDGAQ-----EKFNTYVTLKVQ-NVKSTTIA--VRGSQPSWEQDFMFEINR 58

Query: 81  SVRESVLTLEIFHSKLSETPKPLVGSVKFPLAHLVDSDSSEPTQYVR 127
              +  LT+E+++  L      +VG+V  PL  +  S+   P +++ 
Sbjct: 59  L--DLGLTVEVWNKGLIW--DTMVGTVWIPLRTIRQSNEEGPGEWLT 101

>2d8k_A Synaptotagmin VII; exocytosis, calcium binding, lysosome, C2 domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 141

 Score = 40.4 bits (95), Expect = 1e-04
 Identities = 24/120 (20%), Positives = 47/120 (39%), Gaps = 11/120 (9%)

Query: 15  SPITHDLEITIICAKHLKNVNWRNGGDLKPYVVFYVDPAYRLATQSDDSGSTR-PVWNER 73
           +     L + I+ A+ L   ++    D  P+V  Y+ P  +   ++        P WNE 
Sbjct: 22  NFQESTLTVKIMKAQELPAKDFSGTSD--PFVKIYLLPDKKHKLETKVKRKNLNPHWNET 79

Query: 74  FTLPITHS--VRESVLTLEIFHS-KLSETPKPLVGSVKFPLAHLVDSDSSEPTQYVRKLE 130
           F         V + +L L++    + S      +G V  PL  +   D ++   + + L+
Sbjct: 80  FLFEGFPYEKVVQRILYLQVLDYDRFSR--NDPIGEVSIPLNKV---DLTQMQTFWKDLK 134

>3dzy_A Retinoic acid receptor RXR-alpha; DNA-binding, HOST-virus interaction, metal-binding, nucleus, receptor, transcription, transcription regulation, zinc-FIN activator; HET: DNA REA BRL; 3.10A {Homo sapiens} PDB: 3dzu_A* 3e00_A* Length = 467

 Score = 42.0 bits (98), Expect = 2e-04
 Identities = 12/109 (11%), Positives = 24/109 (22%), Gaps = 2/109 (1%)

Query: 149 NGRPLPPPSQDYQSVPDFGHYYYSAPPPPFPPPSRDYSYYPSYYTPQPPAPPRPLFSRAS 208
           +   +     +       G    +AP           S  P            P+     
Sbjct: 11  DDDKMFSTQVNSSLTSPTGRGSMAAPSLHPSLGPGIGS--PGQLHSPISTLSSPINGMGP 68

Query: 209 SYSLPSGSLSVPSAPVDFSPSQDYKQPPLPPQPRASGYGVPSGSGPSAP 257
            +S+ S  +   S  V  +P+  +           +         P   
Sbjct: 69  PFSVISSPMGPHSMSVPTTPTLGFSTGSPQLSSPMNPVSSSEDIKPPLG 117

>2q3x_A Regulating synaptic membrane exocytosis protein 1; C2 domain dimer, neurotransmitter release, transport protein; HET: MSE; 1.73A {Rattus norvegicus} Length = 171

 Score = 39.8 bits (93), Expect = 4e-04
 Identities = 26/157 (16%), Positives = 48/157 (30%), Gaps = 31/157 (19%)

Query: 18  THDLEITIICAKHLKNVNWRNGG-DLKPYVVFYVDPAYRLATQSDDSGSTR--------- 67
              LE+ +I A+ L             PYV  Y+          + +   +         
Sbjct: 29  KGQLEVEVIRARSLTQKPGSKSTPA--PYVKVYLLE--------NGACIAKKKTRIARKT 78

Query: 68  --PVWNERFTLPITHSVRESVLTLEIFHSKLSETPKPLVGSVKFPLAHLVDSDSSEPTQY 125
             P++ +        S +  VL + ++        K  +G  +  L  L   D S     
Sbjct: 79  LDPLYQQSLVFDE--SPQGKVLQVIVWGDYGRMDHKCFMGVAQILLEEL---DLSSMVIG 133

Query: 126 VRKL----EVLRPSGRPQGKIRVKLVLNGRPLPPPSQ 158
             KL     ++ P+  P  +   +  L     PP  +
Sbjct: 134 WYKLFPPSSLVDPTLAPLTRRASQSSLESSSGPPCIR 170

>3n5a_A Synaptotagmin-7; calcium/phospholipid binding protein, protein transport; 1.44A {Mus musculus} Length = 138

 Score = 39.2 bits (92), Expect = 4e-04
 Identities = 18/101 (17%), Positives = 42/101 (41%), Gaps = 7/101 (6%)

Query: 15  SPITHDLEITIICAKHLKNVNWRNGGDLKPYVVFYVDPAYRLATQSDDS---GSTRPVWN 71
           +P  + + + II A++LK ++     D  PYV  ++    +   +        +  P++N
Sbjct: 12  NPSANSIIVNIIKARNLKAMDIGGTSD--PYVKVWLMYKDKRVEKKKTVTKKRNLNPIFN 69

Query: 72  ERFTLPITHS-VRESVLTLEIFHSKLSETPKPLVGSVKFPL 111
           E F   I    +RE+ + + +       +   ++G +    
Sbjct: 70  ESFAFDIPTEKLRETTIIITVMDKD-KLSRNDVIGKIYLSW 109

>1w15_A Synaptotagmin IV; metal binding protein, endocytosis/exocytosis neurotransmitter release, transmembrane; 1.93A {Rattus norvegicus} SCOP: b.7.1.2 PDB: 1w16_A Length = 153

 Score = 39.3 bits (92), Expect = 4e-04
 Identities = 18/101 (17%), Positives = 38/101 (37%), Gaps = 7/101 (6%)

Query: 15  SPITHDLEITIICAKHLKNVNWRNGGDLKPYVVFYVDPAYRLATQSDDS---GSTRPVWN 71
              T+ L + ++ A+HL   +     D  PYV   +  A +  ++        +   V+N
Sbjct: 26  QSTTNTLTVVVLKARHLPKSDVSGLSD--PYVKVNLYHAKKRISKKKTHVKKCTPNAVFN 83

Query: 72  ERFTLPITHS-VRESVLTLEIFHSKLSETPKPLVGSVKFPL 111
           E F   I    + E  +   +  S+   +   ++G +    
Sbjct: 84  ELFVFDIPCESLEEISVEFLVLDSE-RGSRNEVIGRLVLGA 123

>2b3r_A Phosphatidylinositol-4-phosphate 3-kinase C2 DOMA containing alpha polypeptide; C2 domain, lipid binding, PI3-kinase, transferase; 2.30A {Mus musculus} Length = 134

 Score = 38.8 bits (91), Expect = 4e-04
 Identities = 23/111 (20%), Positives = 38/111 (34%), Gaps = 27/111 (24%)

Query: 18  THDLEITIICAKHLKNVNWRNGGDLKPYVVFYVDPAYRLATQSDDSGSTR---------- 67
              L I ++  K L      +G D  PYV  Y+ P        D   +++          
Sbjct: 19  NGTLFIMVMHIKDLVT---EDGADPNPYVKTYLLP--------DTHKTSKRKTKISRKTR 67

Query: 68  -PVWNERFTLPITH--SVRESVLTLEIFHS-KLSETPKPLVGSVKFPLAHL 114
            P +NE          ++R+  L L +  +  L E     +G +  PL   
Sbjct: 68  NPTFNEMLVYSGYSKETLRQRELQLSVLSAESLRE--NFFLGGITLPLKDF 116

>2cm5_A Rabphilin-3A; protein transport, zinc-finger, Ca2+ binding, metal-binding, synaptic exocytosis, C2A-C2B linker fragment, C2B, zinc, synapse; 1.28A {Rattus norvegicus} SCOP: b.7.1.2 PDB: 2cm6_A 3rpb_A Length = 166

 Score = 39.3 bits (92), Expect = 4e-04
 Identities = 19/102 (18%), Positives = 37/102 (36%), Gaps = 7/102 (6%)

Query: 15  SPITHDLEITIICAKHLKNVNWRNGGDLKPYVVFYVDPAYRLATQSDDS---GSTRPVWN 71
           S     L + II   HL  ++     D  P+V  ++ P      +        +  P +N
Sbjct: 33  STQQGGLIVGIIRCVHLAAMDANGYSD--PFVKLWLKPDMGKKAKHKTQIKKKTLNPEFN 90

Query: 72  ERFTLPITHS-VRESVLTLEIFHSKLSETPKPLVGSVKFPLA 112
           E F   I HS + +  L + ++           +G  +  ++
Sbjct: 91  EEFFYDIKHSDLAKKSLDISVWDYD-IGKSNDYIGGCQLGIS 131

>1tjx_A Similar to synaptotagmini/P65; C2B domain, calcium binding, endocytosis-EX complex; HET: GOL; 1.04A {Rattus norvegicus} SCOP: b.7.1.2 PDB: 1tjm_A* 1uov_A 1uow_A 1k5w_A 2lha_A* Length = 159

 Score = 38.9 bits (91), Expect = 6e-04
 Identities = 17/101 (16%), Positives = 38/101 (37%), Gaps = 7/101 (6%)

Query: 15  SPITHDLEITIICAKHLKNVNWRNGGDLKPYVVFYVDPAYRLATQ---SDDSGSTRPVWN 71
            P    L + I+ AK+LK ++     D  PYV  ++    +   +   +    +  P +N
Sbjct: 21  VPTAGKLTVVILEAKNLKKMDVGGLSD--PYVKIHLMQNGKRLKKKKTTIKKNTLNPYYN 78

Query: 72  ERFTLPITHS-VRESVLTLEIFHSKLSETPKPLVGSVKFPL 111
           E F+  +    +++  + + +            +G V    
Sbjct: 79  ESFSFEVPFEQIQKVQVVVTVLDYD-KIGKNDAIGKVFVGY 118

>3bxj_A RAS GTPase-activating protein syngap; GTPase activation, membrane, phosphoprotein, SH3-binding, signaling protein; 3.00A {Rattus norvegicus} Length = 483

 Score = 40.0 bits (92), Expect = 7e-04
 Identities = 24/108 (22%), Positives = 38/108 (35%), Gaps = 10/108 (9%)

Query: 17  ITHDLEITIICAKHLKNVNWRNGGDLKPYVVFYVD--PAYRLATQSDDSGSTRPVWNERF 74
           + + L++ II A+ L           + Y    +D     R  ++   +      W E F
Sbjct: 9   VDNVLKLWIIEARELPPKK-------RYYCELCLDDMLYARTTSKPRSASGDTVFWGEHF 61

Query: 75  TLPITHSVRESVLTLEIFHSKLSETPKP-LVGSVKFPLAHLVDSDSSE 121
                 +VR   L L     K  +  K   VG V  P+A L     +E
Sbjct: 62  EFNNLPAVRALRLHLYRDSDKKRKKDKAGYVGLVTVPVATLAGRHFTE 109

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	308
2dmh_A	140	Myoferlin; beta-sandwich, FER-1-like protein 3, mu	99.86
1wfj_A	136	Putative elicitor-responsive gene; C2 domain, rike	99.86
2ep6_A	133	MCTP2 protein; beta sandwich, Ca2+ binding, membra	99.85
3b7y_A	153	E3 ubiquitin-protein ligase NEDD4; C2 domain, UBL-	99.85
2fk9_A	157	Protein kinase C, ETA type; ATP-binding, metal-bin	99.84
3m7f_B	176	E3 ubiquitin-protein ligase NEDD4; C2 domain, GRB1	99.84
2nq3_A	173	Itchy homolog E3 ubiquitin protein ligase; C2 doma	99.84
1gmi_A	136	Protein kinase C, epsilon type; PKC, C2 domain, X-	99.83
3kwu_A	148	MUNC13-1; calcium binding protein, phospholipid bi	99.83
3pyc_A	132	E3 ubiquitin-protein ligase smurf1; phospholipid b	99.82
1rlw_A	126	Phospholipase A2, CALB domain; hydrolase, C2 domai	99.81
1a25_A	149	CALB, protein kinase C (beta); calcium++/phospholi	99.77
2d8k_A	141	Synaptotagmin VII; exocytosis, calcium binding, ly	99.76
3rdl_A	137	Protein kinase C alpha type; protein kinase PKC, t	99.75
2b3r_A	134	Phosphatidylinositol-4-phosphate 3-kinase C2 DOMA	99.75
3f04_A	143	Synaptotagmin-1; C2A, calcium, cell junction, cyto	99.75
1rsy_A	152	Synaptotagmin I; calcium/phospholipid binding prot	99.75
2z0u_A	155	WW domain-containing protein 1; C2 domain, alterna	99.75
3fbk_A	153	RGS3, RGP3, regulator of G-protein signaling 3; al	99.74
1v27_A	141	Regulating synaptic membrane exocytosis protein 2;	99.74
2bwq_A	129	Regulating synaptic membrane exocytosis protein 2;	99.73
2cjt_A	131	UNC-13 homolog A, MUNC13-1; phorbol-ester binding,	99.73
2q3x_A	171	Regulating synaptic membrane exocytosis protein 1;	99.73
2chd_A	142	Rabphilin-3A, exophilin-1; C2 domain, C2A, calcium	99.73
1ugk_A	138	Synaptotagmin IV, KIAA1342; beta sandwich, structu	99.73
1rh8_A	142	Piccolo protein; beta-sandwich, metal binding prot	99.73
3fdw_A	148	Synaptotagmin-like protein 4; structural genomics,	99.73
1wfm_A	138	Synaptotagmin XIII; C2 domain, exocytosis, neurotr	99.73
2enp_A	147	B/K protein; C2 type 1,beta sandwich, structural g	99.72
2r83_A	284	Synaptotagmin-1; C2A-C2B, exocytosis, calcium, cel	99.72
1tjx_A	159	Similar to synaptotagmini/P65; C2B domain, calcium	99.72
2dmg_A	142	KIAA1228 protein; beta-sandwich, structural genomi	99.72
3n5a_A	138	Synaptotagmin-7; calcium/phospholipid binding prot	99.71
2cm5_A	166	Rabphilin-3A; protein transport, zinc-finger, Ca2+	99.71
1w15_A	153	Synaptotagmin IV; metal binding protein, endocytos	99.71
2cjs_A	167	UNC-13 homolog A, MUNC13-1; neurotransmitter trans	99.69
3l9b_A	144	Otoferlin; C2-domain, beta-sheets, cell membrane,	99.66
1dqv_A	296	Synaptotagmin III; beta sandwich, calcium ION, C2	99.66
3jzy_A	510	Intersectin 2; C2 domain, structural genomics cons	99.64
3nsj_A	540	Perforin-1; pore forming protein, immune system; H	99.64
1djx_A	624	PLC-D1, phosphoinositide-specific phospholipase C,	99.63
2r83_A	284	Synaptotagmin-1; C2A-C2B, exocytosis, calcium, cel	99.55
3bxj_A	483	RAS GTPase-activating protein syngap; GTPase activ	99.5
1cjy_A	749	CPLA2, protein (cytosolic phospholipase A2); lipid	99.5
3qr0_A	816	Phospholipase C-beta (PLC-beta); PH domain, EF han	99.44
3ohm_B	885	1-phosphatidylinositol-4,5-bisphosphate phosphodi	99.43
1dqv_A	296	Synaptotagmin III; beta sandwich, calcium ION, C2	99.4
2zkm_X	799	1-phosphatidylinositol-4,5-bisphosphate phosphodie	99.4
3pfq_A	674	PKC-B, PKC-beta, protein kinase C beta type; phosp	99.36
2enj_A	138	NPKC-theta, protein kinase C theta type; beta-sand	99.22
1yrk_A	126	NPKC-delta, protein kinase C, delta type; C2 domai	99.18
2yrb_A	156	Protein fantom; beta sandwich, NPPSFA, national pr	96.44
3l4c_A	220	Dedicator of cytokinesis protein 1; DOCK180, DOCK1	95.49
1dx0_A	219	Prion protein; brain, repeat; NMR {Bos taurus} SCO	93.9
2wxf_A	940	Phosphatidylinositol-4,5-bisphosphate 3-kinase Ca	91.57
3hhm_A	1091	Phosphatidylinositol-4,5-bisphosphate 3-kinase cat	89.36
1e7u_A	961	Phosphatidylinositol 3-kinase catalytic subunit; p	84.6
1tpx_A	121	Prion protein, major prion protein; antibody, unkn	82.66
3heq_A	142	Major prion protein; cell membrane, disease mutati	82.48
2qzq_A	152	Axin interactor, dorsalization associated protein;	82.06

>2dmh_A Myoferlin; beta-sandwich, FER-1-like protein 3, muscular dystrophy, cardiomyopathy, membrane fusion, dystrophin, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.86  E-value=7.5e-21  Score=156.28  Aligned_cols=124  Identities=16%  Similarity=0.239  Sum_probs=104.1

Q ss_pred             cccEEEEEEEEeecCCCCCCCCCCCCCcEEEEEEcCCceEEEEeecCCCCCCccccEEEEeeeCC--CCCceEEEEEEec
Q 021710           17 ITHDLEITIICAKHLKNVNWRNGGDLKPYVVFYVDPAYRLATQSDDSGSTRPVWNERFTLPITHS--VRESVLTLEIFHS   94 (308)
Q Consensus        17 ~~~~L~VtIisAk~L~~~~~~~~~~~dPYv~v~l~~~~k~kT~v~k~gt~nP~WnE~f~f~l~~~--~~~~~L~l~V~d~   94 (308)
                      ..+.|+|+|++|++|...+. +  .+||||++++.. .+++|+++++ +.||+|||+|.|.+...  .....|.|+|||+
T Consensus         5 ~~g~L~v~v~~a~~L~~~~~-g--~~dpyv~v~~~~-~~~kT~v~~~-t~nP~wne~f~f~v~~~~~~~~~~l~i~V~d~   79 (140)
T 2dmh_A            5 SSGMLRVIVESASNIPKTKF-G--KPDPIVSVIFKD-EKKKTKKVDN-ELNPVWNEILEFDLRGIPLDFSSSLGIIVKDF   79 (140)
T ss_dssp             BCCEEEEEEEEEESCCCCSS-S--CCCEEEEEECSS-CEEECCCCCS-CSSCEEEEEEEEECSSCCCCTTCEEEEEEEET
T ss_pred             CCcEEEEEEEEeeCCCCCCC-C--CCCeEEEEEECC-EeEEeeeecC-CCCCccCcEEEEEecccccCCCCEEEEEEEEC
Confidence            34899999999999999887 5  499999999996 6899999998 89999999999998753  2467899999999


Q ss_pred             cCCCCCCceeeeEEEeCcccccCCCCCCCceeEEEE---EeCCCC-CCccEEEEEEEEccC
Q 021710           95 KLSETPKPLVGSVKFPLAHLVDSDSSEPTQYVRKLE---VLRPSG-RPQGKIRVKLVLNGR  151 (308)
Q Consensus        95 ~~~~~~d~lLG~~~ipL~~L~~~~~~~~~~~~~~~~---L~~~sg-~~~G~L~v~v~~~~~  151 (308)
                      + ...+|++||++.|+|.+|....     ....|+.   |.+..+ +..|+|+|+|.|.+.
T Consensus        80 d-~~~~~~~lG~~~i~l~~l~~~~-----~~~~w~~l~~l~~~~~~~~~G~l~l~~~~~p~  134 (140)
T 2dmh_A           80 E-TIGQNKLIGTATVALKDLTGDQ-----SRSLPYKLISLLNEKGQDTGATIDLVIGYDPP  134 (140)
T ss_dssp             T-CSSSCCCCEEEEEEGGGTCSSS-----CEEEEEEEEEEECTTCCEEEEEEEEEEEECCC
T ss_pred             C-CCCCCceEEEEEEEHHHhccCC-----CceeEEeeeeccCCCCCCCCCEEEEEEEEECC
Confidence            8 3568899999999999997653     2357877   766554 357999999999864

>1wfj_A Putative elicitor-responsive gene; C2 domain, riken structural genomics/proteomics initiative, RSGI, structural genomics, plant protein; NMR {Arabidopsis thaliana} SCOP: b.7.1.2

Probab=99.86  E-value=2.2e-21  Score=158.69  Aligned_cols=124  Identities=23%  Similarity=0.385  Sum_probs=106.8

Q ss_pred             cccEEEEEEEEeecCCCCCCCCCCCCCcEEEEEEcCCceEEEEeecCCCCCCccccEEEEeeeCCCCCceEEEEEEeccC
Q 021710           17 ITHDLEITIICAKHLKNVNWRNGGDLKPYVVFYVDPAYRLATQSDDSGSTRPVWNERFTLPITHSVRESVLTLEIFHSKL   96 (308)
Q Consensus        17 ~~~~L~VtIisAk~L~~~~~~~~~~~dPYv~v~l~~~~k~kT~v~k~gt~nP~WnE~f~f~l~~~~~~~~L~l~V~d~~~   96 (308)
                      ..+.|+|+|++|++|+..+..+.  +||||++++.. .+.+|+++++++.||+|||+|.|.+..  ....|.|+|||++ 
T Consensus         8 ~~~~L~v~v~~a~~L~~~d~~g~--~dpyv~v~~~~-~~~kT~~~~~~~~nP~Wne~f~f~v~~--~~~~l~~~V~d~~-   81 (136)
T 1wfj_A            8 PHGTLEVVLVSAKGLEDADFLNN--MDPYVQLTCRT-QDQKSNVAEGMGTTPEWNETFIFTVSE--GTTELKAKIFDKD-   81 (136)
T ss_dssp             CEEEEEEEEEEEEECSSCCSSCS--SCCCEEEESSS-CEEECCCCTTCCSSCEEEEEEEEEEES--SCCEEEEEECCSS-
T ss_pred             CcEEEEEEEEeccCCCCcccCCC--cCceEEEEECC-ccceeEeccCCCCCCccCcEEEEEECC--CCCEEEEEEEECC-
Confidence            45899999999999999987764  99999999987 578999998339999999999999987  5678999999998 


Q ss_pred             CCCCCceeeeEEEeCcccccCCCCCCCceeEEEEEeCCCCCCccEEEEEEEEccC
Q 021710           97 SETPKPLVGSVKFPLAHLVDSDSSEPTQYVRKLEVLRPSGRPQGKIRVKLVLNGR  151 (308)
Q Consensus        97 ~~~~d~lLG~~~ipL~~L~~~~~~~~~~~~~~~~L~~~sg~~~G~L~v~v~~~~~  151 (308)
                      ...+|++||++.|+|.++.....    ....||+|. .+++..|+|+|+|.|.+.
T Consensus        82 ~~~~d~~lG~~~i~l~~l~~~~~----~~~~w~~L~-~~~~~~G~i~l~l~~~p~  131 (136)
T 1wfj_A           82 VGTEDDAVGEATIPLEPVFVEGS----IPPTAYNVV-KDEEYKGEIWVALSFKPS  131 (136)
T ss_dssp             SCTTTCCSEEEEEESHHHHHHSE----EEEEEEEEE-ETTEEEEEEEEEEEEEEC
T ss_pred             CCCCCceEEEEEEEHHHhccCCC----CCcEEEEee-cCCccCEEEEEEEEEEeC
Confidence            45689999999999999954321    356899998 566789999999999875

>2ep6_A MCTP2 protein; beta sandwich, Ca2+ binding, membrane binding, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.7.1.1

Probab=99.85  E-value=7.7e-21  Score=155.16  Aligned_cols=119  Identities=22%  Similarity=0.379  Sum_probs=102.7

Q ss_pred             cccEEEEEEEEeecCCCCCCCCCCCCCcEEEEEEcCCceEEEEeecCCCCCCccccEEEEeeeCCCCCceEEEEEEeccC
Q 021710           17 ITHDLEITIICAKHLKNVNWRNGGDLKPYVVFYVDPAYRLATQSDDSGSTRPVWNERFTLPITHSVRESVLTLEIFHSKL   96 (308)
Q Consensus        17 ~~~~L~VtIisAk~L~~~~~~~~~~~dPYv~v~l~~~~k~kT~v~k~gt~nP~WnE~f~f~l~~~~~~~~L~l~V~d~~~   96 (308)
                      ..+.|+|+|++|++|+..+..+.  +||||++++.+ .+++|+++++ +.||+|||+|.|.+..  ....|.|+|||++ 
T Consensus        11 ~~~~L~v~v~~a~~L~~~d~~g~--~dpyv~v~~~~-~~~kT~~~~~-t~nP~wne~f~f~~~~--~~~~l~i~V~d~d-   83 (133)
T 2ep6_A           11 DVGILQVKVLKAADLLAADFSGK--SDPFCLLELGN-DRLQTHTVYK-NLNPEWNKVFTFPIKD--IHDVLEVTVFDED-   83 (133)
T ss_dssp             CSEEEEEEEEEEESCCCSSSSSC--CCEEEEEEETT-EEEECCCCSS-CSSCCCCEEEEEEESC--TTCEEEEEEEEEE-
T ss_pred             CceEEEEEEEeeECCCCCCCCCC--cCeEEEEEECC-EEEEeeeecC-CCCCccccEEEEEecC--CCCEEEEEEEECC-
Confidence            45999999999999999887764  99999999987 6889999998 8999999999999986  3578999999998 


Q ss_pred             CCCCCceeeeEEEeCcccccCCCCCCCceeEEEEEeCCC--CCCccEEEEEEEEc
Q 021710           97 SETPKPLVGSVKFPLAHLVDSDSSEPTQYVRKLEVLRPS--GRPQGKIRVKLVLN  149 (308)
Q Consensus        97 ~~~~d~lLG~~~ipL~~L~~~~~~~~~~~~~~~~L~~~s--g~~~G~L~v~v~~~  149 (308)
                      ...+|++||++.|+|.++..+       ...|++|.+.+  +...|+|+|+++|.
T Consensus        84 ~~~~~~~lG~~~i~l~~l~~~-------~~~w~~L~~~~~~~~~~G~i~l~i~~~  131 (133)
T 2ep6_A           84 GDKPPDFLGKVAIPLLSIRDG-------QPNCYVLKNKDLEQAFKGVIYLEMDLI  131 (133)
T ss_dssp             TTEEEEECCBCEEEGGGCCSS-------CCEECCCBCSCTTSCCSSEEEEEEEEE
T ss_pred             CCCCCCeeEEEEEEHHHccCC-------CceEEEeecCCCCCccceEEEEEEEEE
Confidence            355789999999999998652       13899998754  34789999999885

>3b7y_A E3 ubiquitin-protein ligase NEDD4; C2 domain, UBL-conjugation pathway, structural genomics consortium, SGC, cytoplasm; 1.80A {Homo sapiens} PDB: 2nsq_A

Probab=99.85  E-value=2.3e-20  Score=155.78  Aligned_cols=129  Identities=19%  Similarity=0.296  Sum_probs=100.6

Q ss_pred             CcccEEEEEEEEeecCCCCCCCCCCCCCcEEEEEEcC-----CceEEEEeecCCCCCCccccEEEEeeeCCCCCceEEEE
Q 021710           16 PITHDLEITIICAKHLKNVNWRNGGDLKPYVVFYVDP-----AYRLATQSDDSGSTRPVWNERFTLPITHSVRESVLTLE   90 (308)
Q Consensus        16 ~~~~~L~VtIisAk~L~~~~~~~~~~~dPYv~v~l~~-----~~k~kT~v~k~gt~nP~WnE~f~f~l~~~~~~~~L~l~   90 (308)
                      ...+.|+|+|++|++|+..+..+.  +||||++++..     ..+++|+++++ +.||+|||+|.|.+..  ....|.|+
T Consensus        17 ~~~~~L~V~v~~a~~L~~~d~~g~--~dpyv~v~~~~~~~~~~~~~kT~v~~~-t~nP~wne~f~f~v~~--~~~~l~~~   91 (153)
T 3b7y_A           17 ENSRIVRVRVIAGIGLAKKDILGA--SDPYVRVTLYDPMNGVLTSVQTKTIKK-SLNPKWNEEILFRVHP--QQHRLLFE   91 (153)
T ss_dssp             TTCEEEEEEEEEEESCC---------CCEEEEEEEEETTTEEEEEEECCCCSS-CSSCCCCEEEEEEECT--TTCEEEEE
T ss_pred             CCccEEEEEEEEeeCCCCCCCCCC--CCcEEEEEEECCCCccceeeeCccccC-CCCCCCCCEEEEEecC--CCCEEEEE
Confidence            346899999999999999887764  99999999974     25889999998 8999999999999986  46789999


Q ss_pred             EEeccCCCCCCceeeeEEEeCcccccCCCCC-CCceeEEEEEeCCC--CCCccEEEEEEEEcc
Q 021710           91 IFHSKLSETPKPLVGSVKFPLAHLVDSDSSE-PTQYVRKLEVLRPS--GRPQGKIRVKLVLNG  150 (308)
Q Consensus        91 V~d~~~~~~~d~lLG~~~ipL~~L~~~~~~~-~~~~~~~~~L~~~s--g~~~G~L~v~v~~~~  150 (308)
                      |||++ ...++++||++.|+|.+|....... ......||.|...+  .+..|+|+|+++|.+
T Consensus        92 V~d~d-~~~~d~~iG~~~i~l~~l~~~~~~~~~~~~~~w~~L~~~~~~~~~~G~i~l~l~~~P  153 (153)
T 3b7y_A           92 VFDEN-RLTRDDFLGQVDVPLYPLPTENPRLERPYTFKDFVLHPRSHKSRVKGYLRLKMTYLP  153 (153)
T ss_dssp             EEECC-SSSCCEEEEEEEEECCSCCBCCTTSCCCCCCEEEECBCSSTTCCCCSEEEEEEEECC
T ss_pred             EEECC-CCcCCCeeEEEEEEHHHcccCCCcccccccccccccccccCCCCcceEEEEEEEEeC
Confidence            99998 4568999999999999998754321 11235899997543  456899999999863

>2fk9_A Protein kinase C, ETA type; ATP-binding, metal-binding, nucleotide-binding, diacylglycerol binding, serine/threonine-protein kinase, transferase; 1.75A {Homo sapiens}

Probab=99.84  E-value=6.5e-21  Score=161.25  Aligned_cols=123  Identities=22%  Similarity=0.374  Sum_probs=100.0

Q ss_pred             CcccEEEEEEEEeecCCCCCCC------C--CCCCCcEEEEEEcCCceEEEEeecCCCCCCccccEEEEeeeCCCCCceE
Q 021710           16 PITHDLEITIICAKHLKNVNWR------N--GGDLKPYVVFYVDPAYRLATQSDDSGSTRPVWNERFTLPITHSVRESVL   87 (308)
Q Consensus        16 ~~~~~L~VtIisAk~L~~~~~~------~--~~~~dPYv~v~l~~~~k~kT~v~k~gt~nP~WnE~f~f~l~~~~~~~~L   87 (308)
                      ...+.|+|+|++|++|+..++.      +  .+.+||||++.++...+.+|+++++ +.||+|||+|.|.+..   ...|
T Consensus        26 ~~~g~L~V~VieA~~L~~~D~~~~~~~f~~~~g~sDPYv~v~l~~~~~~kT~v~~k-tlnP~WNE~F~f~v~~---~~~L  101 (157)
T 2fk9_A           26 KFNGYLRVRIGEAVGLQPTRWSLRHSLFKKGHQLLDPYLTVSVDQVRVGQTSTKQK-TNKPTYNEEFCANVTD---GGHL  101 (157)
T ss_dssp             CEEEEEEEEEEEEECCCCCHHHHHTTTSSSSCCCCCEEEEEEETTEEEEECCCCSS-CSSCEEEEEEEEEEEE---ECEE
T ss_pred             cCccEEEEEEEEEECCCCccccccccccccCCCCCCeEEEEEECCEeeEEeeecCC-CCCCccCcEEEEEcCC---CCEE
Confidence            3468999999999999987632      1  0148999999998766689999988 9999999999999975   4689


Q ss_pred             EEEEEeccCCCCCCceeeeEEEeCcccccCCCCCCCceeEEEEEeCCCCCCccEEEEEEEEc
Q 021710           88 TLEIFHSKLSETPKPLVGSVKFPLAHLVDSDSSEPTQYVRKLEVLRPSGRPQGKIRVKLVLN  149 (308)
Q Consensus        88 ~l~V~d~~~~~~~d~lLG~~~ipL~~L~~~~~~~~~~~~~~~~L~~~sg~~~G~L~v~v~~~  149 (308)
                      .|+|||++ ...+|++||++.|+|.+|...... ......||+|.     ++|+|+|+++|.
T Consensus       102 ~~~V~D~d-~~~~dd~iG~~~i~l~~l~~~~~~-~~~~~~W~~L~-----~~G~i~l~l~~~  156 (157)
T 2fk9_A          102 ELAVFHET-PLGYDHFVANCTLQFQELLRTTGA-SDTFEGWVDLE-----PEGKVFVVITLT  156 (157)
T ss_dssp             EEEEEECC-SSSSCEEEEEEEEEHHHHHHHHTT-CSEEEEEEECB-----SSCEEEEEEEEC
T ss_pred             EEEEEECC-CCCCCCEEEEEEEEHHHhhcccCC-CCcccEEEECC-----CCcEEEEEEEEE
Confidence            99999998 466899999999999999864111 01457999994     389999999984

>3m7f_B E3 ubiquitin-protein ligase NEDD4; C2 domain, GRB10, SH2 domain, phosphoprotein, conjugation pathway, signaling protein-ligase complex; 2.00A {Mus musculus}

Probab=99.84  E-value=4.3e-20  Score=158.10  Aligned_cols=129  Identities=19%  Similarity=0.298  Sum_probs=99.4

Q ss_pred             cccEEEEEEEEeecCCCCCCCCCCCCCcEEEEEEcCC-----ceEEEEeecCCCCCCccccEEEEeeeCCCCCceEEEEE
Q 021710           17 ITHDLEITIICAKHLKNVNWRNGGDLKPYVVFYVDPA-----YRLATQSDDSGSTRPVWNERFTLPITHSVRESVLTLEI   91 (308)
Q Consensus        17 ~~~~L~VtIisAk~L~~~~~~~~~~~dPYv~v~l~~~-----~k~kT~v~k~gt~nP~WnE~f~f~l~~~~~~~~L~l~V   91 (308)
                      ..++|+|+|++|++|+..+..+.  +||||++++...     .+++|+++++ +.||+|||+|.|.+..  ....|.|+|
T Consensus         6 ~~g~L~V~v~~a~~L~~~d~~g~--~DPyv~v~l~~~~~~~~~~~kT~v~~~-t~nP~Wne~f~f~v~~--~~~~L~~~V   80 (176)
T 3m7f_B            6 DTRVVRVKVIAGIGLAKKDILGA--SDPYVRVTLYDPMSGILTSVQTKTIKK-SLNPKWNEEILFRVLP--QRHRILFEV   80 (176)
T ss_dssp             TCEEEEEEEEEEESCC---CCCC--CCEEEEEEEEETTTEEEEEEECCCCSS-CSSCEEEEEEEEEECT--TTCEEEEEE
T ss_pred             CcEEEEEEEEEeeCCCCcCCCCC--cCcEEEEEEECCCCCcccceeCceECC-CCCCcccceEEEEEcC--CCCEEEEEE
Confidence            45899999999999999888765  999999999742     5789999998 9999999999999986  357899999


Q ss_pred             EeccCCCCCCceeeeEEEeCcccccCCCCC-CCceeEEEEEeCC--CCCCccEEEEEEEEccC
Q 021710           92 FHSKLSETPKPLVGSVKFPLAHLVDSDSSE-PTQYVRKLEVLRP--SGRPQGKIRVKLVLNGR  151 (308)
Q Consensus        92 ~d~~~~~~~d~lLG~~~ipL~~L~~~~~~~-~~~~~~~~~L~~~--sg~~~G~L~v~v~~~~~  151 (308)
                      ||++ ...+++|||++.|+|.+|....... ......||.|...  .++..|+|+|+|.|.+.
T Consensus        81 ~d~d-~~~~d~~lG~~~i~l~~l~~~~~~~~~~~~~~w~~L~~~~~~~~~~G~l~l~l~~~p~  142 (176)
T 3m7f_B           81 FDEN-RLTRDDFLGQVDVPLYPLPTENPRMERPYTFKDFVLHPRSHKSRVKGYLRLKMTYLPK  142 (176)
T ss_dssp             EECC-----CEEEEEEEEESCSCCBC------CCCCEEEECBCSSTTCCCCSEEEEEEEECC-
T ss_pred             EECC-CCCCCcEEEEEEEEHHHccccCCcccccccccEEEccccCCCCccCEEEEEEEEEEeC
Confidence            9998 3568999999999999998754321 0122379999753  34568999999999876

>2nq3_A Itchy homolog E3 ubiquitin protein ligase; C2 domain, UBL conjugation pathway, structural genomics consortium, SGC; 1.80A {Homo sapiens} SCOP: b.7.1.1

Probab=99.84  E-value=1.8e-20  Score=160.78  Aligned_cols=127  Identities=21%  Similarity=0.288  Sum_probs=102.5

Q ss_pred             cccEEEEEEEEeecCCCCCCCCCCCCCcEEEEEEcCCceEEEEeecCCCCCCccccEEEEeeeCCCCCceEEEEEEeccC
Q 021710           17 ITHDLEITIICAKHLKNVNWRNGGDLKPYVVFYVDPAYRLATQSDDSGSTRPVWNERFTLPITHSVRESVLTLEIFHSKL   96 (308)
Q Consensus        17 ~~~~L~VtIisAk~L~~~~~~~~~~~dPYv~v~l~~~~k~kT~v~k~gt~nP~WnE~f~f~l~~~~~~~~L~l~V~d~~~   96 (308)
                      ....|+|+|++|++|...+..++  +||||+|+++. .+.+|+++++ +.||+|||+|.|.+..   ...|.|+|||++ 
T Consensus        34 ~~~~L~V~V~~A~~L~~~~~~~~--sDPYv~v~~~~-~~~kT~v~~~-tlnP~Wne~f~f~v~~---~~~L~~~V~D~d-  105 (173)
T 2nq3_A           34 MKSQLQITVISAKLKENKKNWFG--PSPYVEVTVDG-QSKKTEKCNN-TNSPKWKQPLTVIVTP---VSKLHFRVWSHQ-  105 (173)
T ss_dssp             CCEEEEEEEEEEEECCCC--CCC--CCEEEEEEETT-EEEECCCCSS-CSSCEEEEEEEEEECT---TCEEEEEEEECC-
T ss_pred             CceEEEEEEEEeECCCCcccCCC--CCeEEEEEECC-EEeEccccCC-CCCCeECCEEEEEeCC---CCEEEEEEEECC-
Confidence            45889999999999995544444  99999999987 8999999998 9999999999999853   678999999998 


Q ss_pred             CCCCCceeeeEEEeCcccccCCCCCCCceeEEEEEeCCC--CCCccEEEEEEEEccC
Q 021710           97 SETPKPLVGSVKFPLAHLVDSDSSEPTQYVRKLEVLRPS--GRPQGKIRVKLVLNGR  151 (308)
Q Consensus        97 ~~~~d~lLG~~~ipL~~L~~~~~~~~~~~~~~~~L~~~s--g~~~G~L~v~v~~~~~  151 (308)
                      ....|++||++.|+|.+|........+....|++|...+  .+..|+|.|+|.+...
T Consensus       106 ~~~~dd~lG~~~i~l~~l~~~~~~~~~~~~~~~~L~~~~~~~~~~G~L~v~l~~l~~  162 (173)
T 2nq3_A          106 TLKSDVLLGTAALDIYETLKSNNMKLEEVVVTLQLGGDKEPTETIGDLSICLDGLQL  162 (173)
T ss_dssp             SSSCCEEEEEEEEEHHHHHHHTTTEESSEEEEEEEEESSCTTSEEEEEEEEEESEEC
T ss_pred             CCCCCceEEEEEEEHHHhcccCCCCcceeEEEEECccCCCCCcccEEEEEEEeeeec
Confidence            356889999999999999764332111236799998753  3358999999988754

>1gmi_A Protein kinase C, epsilon type; PKC, C2 domain, X-RAY, phospholipids, PKC epsilon.; 1.7A {Rattus rattus} SCOP: b.7.1.1

Probab=99.83  E-value=1.5e-20  Score=154.22  Aligned_cols=120  Identities=23%  Similarity=0.417  Sum_probs=99.7

Q ss_pred             ccEEEEEEEEeecCCCCCCCCC---------CCCCcEEEEEEcCCceEEEEeecCCCCCCccccEEEEeeeCCCCCceEE
Q 021710           18 THDLEITIICAKHLKNVNWRNG---------GDLKPYVVFYVDPAYRLATQSDDSGSTRPVWNERFTLPITHSVRESVLT   88 (308)
Q Consensus        18 ~~~L~VtIisAk~L~~~~~~~~---------~~~dPYv~v~l~~~~k~kT~v~k~gt~nP~WnE~f~f~l~~~~~~~~L~   88 (308)
                      .+.|+|+|++|++|+..+..++         +.+||||+++++...+.+|+++++ +.||+|||+|.|.+...   ..|.
T Consensus         5 ~g~L~v~v~~a~~L~~~d~~~~~~~g~~~~~~~~DPyv~v~l~~~~~~~T~~~~~-t~nP~WnE~f~f~v~~~---~~L~   80 (136)
T 1gmi_A            5 NGLLKIKICEAVSLKPTAWSLRDAVGPRPQTFLLDPYIALNVDDSRIGQTATKQK-TNSPAWHDEFVTDVCNG---RKIE   80 (136)
T ss_dssp             EEEEEEEEEEEESCCCCHHHHCC-CCSSCCCCCCCEEEEEEETTEEEEECCCCSS-CSSCEEEEEEEEEEEEE---CEEE
T ss_pred             ceEEEEEEEeCcCCCCcccccccccccccCCcCcCcEEEEEECCeEeeeeeEECC-CcCCccCCEEEEEecCC---CEEE
Confidence            4899999999999998764321         138999999998766679999888 99999999999999762   7899


Q ss_pred             EEEEeccCCCCCCceeeeEEEeCcccccCCCCCCCceeEEEEEeCCCCCCccEEEEEEEEcc
Q 021710           89 LEIFHSKLSETPKPLVGSVKFPLAHLVDSDSSEPTQYVRKLEVLRPSGRPQGKIRVKLVLNG  150 (308)
Q Consensus        89 l~V~d~~~~~~~d~lLG~~~ipL~~L~~~~~~~~~~~~~~~~L~~~sg~~~G~L~v~v~~~~  150 (308)
                      |+|||++ ...+|++||++.|+|.++......   ....|+.|.     ++|+|+|+++|..
T Consensus        81 ~~V~d~d-~~~~dd~iG~~~i~l~~l~~~~~~---~~~~w~~L~-----~~G~i~l~l~~~~  133 (136)
T 1gmi_A           81 LAVFHDA-PIGYDDFVANCTIQFEELLQNGSR---HFEDWIDLE-----PEGKVYVIIDLSG  133 (136)
T ss_dssp             EEEEECC-SSSSCEEEEEEEEEHHHHTSTTCS---EEEEEEECB-----SSCEEEEEEEEEE
T ss_pred             EEEEeCC-CCCCCCEEEEEEEEHHHhcccCCC---CccEEEEcC-----CCeEEEEEEEEEe
Confidence            9999998 356899999999999999875322   346899884     4899999999864

>3kwu_A MUNC13-1; calcium binding protein, phospholipid binding protein, metal binding protein; HET: GOL; 1.37A {Rattus norvegicus} SCOP: b.7.1.0 PDB: 3kwt_A*

Probab=99.83  E-value=1.1e-19  Score=150.85  Aligned_cols=119  Identities=18%  Similarity=0.351  Sum_probs=101.3

Q ss_pred             ccEEEEEEEEeecCCCCCCCCCCCCCcEEEEEEcCCceEEEEeecCCCCCCccccEEEEeeeCCCCCceEEEEEEeccCC
Q 021710           18 THDLEITIICAKHLKNVNWRNGGDLKPYVVFYVDPAYRLATQSDDSGSTRPVWNERFTLPITHSVRESVLTLEIFHSKLS   97 (308)
Q Consensus        18 ~~~L~VtIisAk~L~~~~~~~~~~~dPYv~v~l~~~~k~kT~v~k~gt~nP~WnE~f~f~l~~~~~~~~L~l~V~d~~~~   97 (308)
                      .+.|+|+|++|++|...+..+.  +||||++.++. .+.+|+++++ +.||+|||+|.|.+...  ...|.|+|||++..
T Consensus        16 ~~~L~V~v~~a~~L~~~d~~g~--~dpyv~v~~~~-~~~kT~~~~~-t~nP~Wne~f~f~v~~~--~~~l~~~v~d~d~~   89 (148)
T 3kwu_A           16 SAKISITVVCAQGLQAKDKTGS--SDPYVTVQVGK-TKKRTKTIYG-NLNPVWEENFHFECHNS--SDRIKVRVLDEDDD   89 (148)
T ss_dssp             CEEEEEEEEEEESCCCCSTTSC--CCEEEEEEETT-EEEECCCCCS-CSSCEEEEEEEEEECST--TCEEEEEEEECCCS
T ss_pred             ccEEEEEEEeeeCCCCCCCCCC--cCeEEEEEECC-EEEECCccCC-CCCCCcccEEEEEecCC--CCEEEEEEEECCCC
Confidence            5899999999999999887764  99999999976 7899999998 89999999999999763  57899999999831


Q ss_pred             ----------CCCCceeeeEEEeCcccccCCCCCCCceeEEEEEeCCC--CCCccEEEEEEEEc
Q 021710           98 ----------ETPKPLVGSVKFPLAHLVDSDSSEPTQYVRKLEVLRPS--GRPQGKIRVKLVLN  149 (308)
Q Consensus        98 ----------~~~d~lLG~~~ipL~~L~~~~~~~~~~~~~~~~L~~~s--g~~~G~L~v~v~~~  149 (308)
                                ...+++||++.|+|.++..       ....|++|....  .+..|+|+|+|+|.
T Consensus        90 ~~~~~~~~~~~~~~~~lG~~~i~l~~l~~-------~~~~w~~L~~~~~~~~~~G~i~l~l~~e  146 (148)
T 3kwu_A           90 IKSRVKQRFKRESDDFLGQTIIEVRTLSG-------EMDVWYNLDKRTDKSAVSGAIRLHISVE  146 (148)
T ss_dssp             HHHHHHTTTSSCSSEEEEEEEEEGGGCCS-------EEEEEEECBCSSTTCCCCCEEEEEEEEE
T ss_pred             ccccccccccCCCCccEEEEEEEHHHCcC-------CCCEEEEcccCCCCCCCceEEEEEEEEE
Confidence                      1589999999999999832       346899998543  34679999999985

>3pyc_A E3 ubiquitin-protein ligase smurf1; phospholipid binding, membrane associate, lipid binding PROT; 1.96A {Homo sapiens} PDB: 2jqz_A

Probab=99.82  E-value=1.3e-19  Score=147.71  Aligned_cols=122  Identities=18%  Similarity=0.346  Sum_probs=98.8

Q ss_pred             cccEEEEEEEEeecCCCCCCCCCCCCCcEEEEEEcC-CceEEEEeecCCCCCCccccEEEEeeeCCCCCceEEEEEEecc
Q 021710           17 ITHDLEITIICAKHLKNVNWRNGGDLKPYVVFYVDP-AYRLATQSDDSGSTRPVWNERFTLPITHSVRESVLTLEIFHSK   95 (308)
Q Consensus        17 ~~~~L~VtIisAk~L~~~~~~~~~~~dPYv~v~l~~-~~k~kT~v~k~gt~nP~WnE~f~f~l~~~~~~~~L~l~V~d~~   95 (308)
                      +...|+|+|++|++|+..+..+.  +||||+++++. ..+++|+++++ +.||+|||+|.|.+...   ..|.|+|||++
T Consensus         3 ~~~~L~V~v~~a~~L~~~d~~g~--sDpyv~v~~~~~~~~~kT~v~~~-t~nP~wne~f~f~v~~~---~~l~~~v~d~d   76 (132)
T 3pyc_A            3 EFIKIRLTVLCAKNLAKKDFFRL--PDPFAKIVVDGSGQCHSTDTVKN-TLDPKWNQHYDLYVGKT---DSITISVWNHK   76 (132)
T ss_dssp             SEEEEEEEEEEEESCCCCSTTCC--CCEEEEEEETTTCCEEECCCCSS-CSSCEEEEEEEEEEETT---CCEEEEEEEGG
T ss_pred             CeEEEEEEEEEeECCCCCCCCCC--cCeEEEEEECCCCceEECCccCC-CCCCCccCEEEEEeCCC---CEEEEEEEECC
Confidence            45789999999999999888765  99999999975 47899999988 99999999999999763   35999999998


Q ss_pred             CCCCC---CceeeeEEEeCcccccCCCCCCCceeEEEEEeCCC--C--CCccEEEEEEEEc
Q 021710           96 LSETP---KPLVGSVKFPLAHLVDSDSSEPTQYVRKLEVLRPS--G--RPQGKIRVKLVLN  149 (308)
Q Consensus        96 ~~~~~---d~lLG~~~ipL~~L~~~~~~~~~~~~~~~~L~~~s--g--~~~G~L~v~v~~~  149 (308)
                      . ..+   |+|||++.|+|.+|......    ...|++|....  +  +..|+|.|+|..+
T Consensus        77 ~-~~~~~~d~~lG~~~i~l~~l~~~~~~----~~~~~~L~~~~~~~~~~~~G~i~v~l~~r  132 (132)
T 3pyc_A           77 K-IHKKQGAGFLGCVRLLSNAISRLKDT----GYQRLDLCKLNPSDTDAVRGQIVVSLQTR  132 (132)
T ss_dssp             G-TTSSTTTTEEEEEEECHHHHHHHTTS----CCEEEECBCSSTTCCCCCCSEEEEEEEEC
T ss_pred             C-CCCCCCCCceEEEEEeHHHhhccccc----CcEEEeeeecCCCCCCceeEEEEEEEEcC
Confidence            4 333   78999999999998443222    24788887542  2  3489999999864

>1rlw_A Phospholipase A2, CALB domain; hydrolase, C2 domain; 2.40A {Homo sapiens} SCOP: b.7.1.1

Probab=99.81  E-value=3.8e-19  Score=143.34  Aligned_cols=116  Identities=16%  Similarity=0.354  Sum_probs=93.0

Q ss_pred             ccEEEEEEEEeecCCCC---CCCCCCCCCcEEEEEEcC--CceEEEEeecCCCCCCccccEEEEeeeCCCCCceEEEEEE
Q 021710           18 THDLEITIICAKHLKNV---NWRNGGDLKPYVVFYVDP--AYRLATQSDDSGSTRPVWNERFTLPITHSVRESVLTLEIF   92 (308)
Q Consensus        18 ~~~L~VtIisAk~L~~~---~~~~~~~~dPYv~v~l~~--~~k~kT~v~k~gt~nP~WnE~f~f~l~~~~~~~~L~l~V~   92 (308)
                      .+.|+|+|++|++|+..   +..+  .+||||++++.+  ..+++|+++++ +.||+|||+|.|.+... ....|.|+||
T Consensus         2 ~~~L~v~v~~a~~L~~~~~~d~~g--~~dpyv~v~~~~~~~~~~kT~v~~~-t~nP~wne~f~f~v~~~-~~~~l~i~V~   77 (126)
T 1rlw_A            2 SHKFTVVVLRATKVTKGAFGDMLD--TPDPYVELFISTTPDSRKRTRHFNN-DINPVWNETFEFILDPN-QENVLEITLM   77 (126)
T ss_dssp             CEEEEEEEEEEESCCSCHHHHHHC--CCCEEEEEECTTSTTCCEECCCCTT-CSSCEEEEEEEEEECTT-SCCEEEEEEE
T ss_pred             CcEEEEEEEeeeCCCCCCccccCC--CCCCEEEEEEccCCCceEEccccCC-CCCCcccceEEEEecCC-CCCEEEEEEE
Confidence            37899999999999984   4444  499999999986  37899999998 89999999999999653 4678999999


Q ss_pred             eccCCCCCCceeeeEEEeCcccccCCCCCCCceeEEEEEeCCCCCCccEEEEEEE
Q 021710           93 HSKLSETPKPLVGSVKFPLAHLVDSDSSEPTQYVRKLEVLRPSGRPQGKIRVKLV  147 (308)
Q Consensus        93 d~~~~~~~d~lLG~~~ipL~~L~~~~~~~~~~~~~~~~L~~~sg~~~G~L~v~v~  147 (308)
                      |++. . ++++||++.|+|.+|..+.     ....|++|..   ...|.|+|++.
T Consensus        78 d~d~-~-~~~~iG~~~i~l~~l~~~~-----~~~~~~~L~~---~~~g~i~~~le  122 (126)
T 1rlw_A           78 DANY-V-MDETLGTATFTVSSMKVGE-----KKEVPFIFNQ---VTEMVLEMSLE  122 (126)
T ss_dssp             ECCS-S-CCEEEEEEEEEGGGSCTTC-----EEEEEEEETT---TEEEEEEEEEE
T ss_pred             ECCC-C-CCceeEEEEEEHHHccCCC-----cEEEEEEcCC---CceEEEEEEEE
Confidence            9983 3 5899999999999997532     4568999953   23445554443

>1a25_A CALB, protein kinase C (beta); calcium++/phospholipid binding protein, calcium-binding protein; HET: PSE; 2.70A {Rattus norvegicus} SCOP: b.7.1.2

Probab=99.77  E-value=2.2e-18  Score=143.33  Aligned_cols=106  Identities=24%  Similarity=0.364  Sum_probs=90.7

Q ss_pred             ccEEEEEEEEeecCCCCCCCCCCCCCcEEEEEEcC----CceEEEEeecCCCCCCccccEEEEeeeCCCCCceEEEEEEe
Q 021710           18 THDLEITIICAKHLKNVNWRNGGDLKPYVVFYVDP----AYRLATQSDDSGSTRPVWNERFTLPITHSVRESVLTLEIFH   93 (308)
Q Consensus        18 ~~~L~VtIisAk~L~~~~~~~~~~~dPYv~v~l~~----~~k~kT~v~k~gt~nP~WnE~f~f~l~~~~~~~~L~l~V~d   93 (308)
                      .+.|+|+|++|++|...+..+.  +||||++++.+    ..+.+|+++++ +.||+|||+|.|.+........|.|+|||
T Consensus        30 ~~~L~v~v~~a~~L~~~d~~g~--~dpyv~v~~~~~~~~~~~~kT~v~~~-t~nP~wne~f~f~v~~~~~~~~L~i~V~d  106 (149)
T 1a25_A           30 REVLIVVVRDAKNLVPMDPNGL--SDPYVKLKLIPDPKSESKQKTKTIKC-SLNPEWNETFRFQLKESDKDRRLSVEIWD  106 (149)
T ss_dssp             SSEEEEEEEEEESCCCCSTTSC--CCEEEEEEEESCTTCSSCEECCCCSS-CSSCEEEEEEEEECCSGGGGCEEEEEEEE
T ss_pred             CCEEEEEEEEeeCCCCCCCCCC--cCeEEEEEEECCCCCcceEecceeCC-CCCCcCCcEEEEEeccccCCCEEEEEEEE
Confidence            4789999999999999887764  99999999974    46899999998 99999999999998763234689999999


Q ss_pred             ccCCCCCCceeeeEEEeCcccccCCCCCCCceeEEEEEeC
Q 021710           94 SKLSETPKPLVGSVKFPLAHLVDSDSSEPTQYVRKLEVLR  133 (308)
Q Consensus        94 ~~~~~~~d~lLG~~~ipL~~L~~~~~~~~~~~~~~~~L~~  133 (308)
                      ++. ..++++||++.|+|.+|...      ....||+|..
T Consensus       107 ~d~-~~~~~~iG~~~i~l~~l~~~------~~~~W~~L~~  139 (149)
T 1a25_A          107 WDL-TSRNDFMGSLSFGISELQKA------GVDGWFKLLS  139 (149)
T ss_dssp             CCS-SSCCEEEEEEEEEHHHHTTC------CEEEEEECBC
T ss_pred             CCC-CCCCCEEEEEEEEHHHhCcC------ccCCeEEccC
Confidence            983 56899999999999999764      2468999975

>2d8k_A Synaptotagmin VII; exocytosis, calcium binding, lysosome, C2 domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.76  E-value=6.4e-18  Score=139.08  Aligned_cols=109  Identities=20%  Similarity=0.326  Sum_probs=90.8

Q ss_pred             cccEEEEEEEEeecCCCCCCCCCCCCCcEEEEEEcC--CceEEEEeecCCCCCCccccEEEEeeeC--CCCCceEEEEEE
Q 021710           17 ITHDLEITIICAKHLKNVNWRNGGDLKPYVVFYVDP--AYRLATQSDDSGSTRPVWNERFTLPITH--SVRESVLTLEIF   92 (308)
Q Consensus        17 ~~~~L~VtIisAk~L~~~~~~~~~~~dPYv~v~l~~--~~k~kT~v~k~gt~nP~WnE~f~f~l~~--~~~~~~L~l~V~   92 (308)
                      ..+.|+|+|++|++|+..+..+.  +||||++++.+  ..+++|+++++ +.||+|||+|.|.+..  .+....|.|+||
T Consensus        24 ~~~~L~v~v~~a~~L~~~d~~g~--~dpyv~v~~~~~~~~~~kT~v~~~-t~nP~wne~f~f~~~~~~~~~~~~l~i~V~  100 (141)
T 2d8k_A           24 QESTLTVKIMKAQELPAKDFSGT--SDPFVKIYLLPDKKHKLETKVKRK-NLNPHWNETFLFEGFPYEKVVQRILYLQVL  100 (141)
T ss_dssp             SSCCEEEEEEEEESCCCCSSSSC--CCEEEEEEEESCCSSEEECCCCTT-CSSCCCCEEEEECSCCHHHHTTSEEEEEEE
T ss_pred             CCCEEEEEEEEeECCCCCCCCCC--CCcEEEEEEECCCCccEeCceEcC-CCCCccccEEEECccCHHHcccCEEEEEEE
Confidence            35889999999999999887764  99999999953  46899999988 9999999999998532  123578999999


Q ss_pred             eccCCCCCCceeeeEEEeCcccccCCCCCCCceeEEEEEeCC
Q 021710           93 HSKLSETPKPLVGSVKFPLAHLVDSDSSEPTQYVRKLEVLRP  134 (308)
Q Consensus        93 d~~~~~~~d~lLG~~~ipL~~L~~~~~~~~~~~~~~~~L~~~  134 (308)
                      |++ ...++++||++.|+|.+|....     ....|++|...
T Consensus       101 d~d-~~~~~~~iG~~~i~l~~l~~~~-----~~~~W~~L~~~  136 (141)
T 2d8k_A          101 DYD-RFSRNDPIGEVSIPLNKVDLTQ-----MQTFWKDLKPS  136 (141)
T ss_dssp             ECC-SSSSCEEEEEEEEETTTSCTTS-----CEEEEECCEEC
T ss_pred             ECC-CCCCCcEEEEEEEEhhhhcCCC-----CccEEEECcCC
Confidence            998 3568899999999999997643     34689999754

>2b3r_A Phosphatidylinositol-4-phosphate 3-kinase C2 DOMA containing alpha polypeptide; C2 domain, lipid binding, PI3-kinase, transferase; 2.30A {Mus musculus}

Probab=99.75  E-value=6.3e-18  Score=138.52  Aligned_cols=107  Identities=21%  Similarity=0.334  Sum_probs=88.5

Q ss_pred             cccEEEEEEEEeecCCCCCCCCCCCCCcEEEEEEcC----CceEEEEeecCCCCCCccccEEEEe-eeCC-CCCceEEEE
Q 021710           17 ITHDLEITIICAKHLKNVNWRNGGDLKPYVVFYVDP----AYRLATQSDDSGSTRPVWNERFTLP-ITHS-VRESVLTLE   90 (308)
Q Consensus        17 ~~~~L~VtIisAk~L~~~~~~~~~~~dPYv~v~l~~----~~k~kT~v~k~gt~nP~WnE~f~f~-l~~~-~~~~~L~l~   90 (308)
                      ..+.|+|+|++|++|+. +..+  .+||||++++.+    ..+.+|+++++ +.||+|||+|.|. +... +....|.|+
T Consensus        18 ~~~~L~V~V~~a~~L~~-~~~g--~~DPyv~v~l~~~~~~~~~~kT~v~~~-t~nP~wnE~f~f~~v~~~~l~~~~L~~~   93 (134)
T 2b3r_A           18 RNGTLFIMVMHIKDLVT-EDGA--DPNPYVKTYLLPDTHKTSKRKTKISRK-TRNPTFNEMLVYSGYSKETLRQRELQLS   93 (134)
T ss_dssp             ETTEEEEEEEEEECCCC-TTSC--CCCEEEEEEEESCSSSCCCEECCCCCS-CSSCEEEEEEEEESCCHHHHTTCEEEEE
T ss_pred             cCCEEEEEEEEeeCCCC-CCCC--CCCeEEEEEEEcCCCCCceecCCcCcC-CCCCCCccEEEECCcCHHHhCcCEEEEE
Confidence            35899999999999996 5444  499999999942    36899999998 9999999999999 7642 245789999


Q ss_pred             EEeccCCCCCCceeeeEEEeCcccccCCCCCCCceeEEEEEeC
Q 021710           91 IFHSKLSETPKPLVGSVKFPLAHLVDSDSSEPTQYVRKLEVLR  133 (308)
Q Consensus        91 V~d~~~~~~~d~lLG~~~ipL~~L~~~~~~~~~~~~~~~~L~~  133 (308)
                      |||++ ...++++||++.|+|.++..+.     ....||+|..
T Consensus        94 V~d~d-~~~~~~~lG~~~i~l~~l~~~~-----~~~~W~~L~~  130 (134)
T 2b3r_A           94 VLSAE-SLRENFFLGGITLPLKDFNLSK-----ETVKWYQLTA  130 (134)
T ss_dssp             EEECC-SSSCCEEEEEEEEEGGGSCTTS-----CEEEEEECBC
T ss_pred             EEECC-CCCCCcEEEEEEEEhhhccCCC-----CcceeEECCC
Confidence            99998 4567899999999999997643     3468999964

>3f04_A Synaptotagmin-1; C2A, calcium, cell junction, cytoplasmic vesicle, glycoprotein, lipoprotein, membrane, metal- binding, palmitate, phosphoprotein; 1.35A {Homo sapiens} SCOP: b.7.1.2 PDB: 3f01_A 3f05_A 3f00_A 1byn_A 2k45_A 2k4a_A 2k8m_A 2ki6_A*

Probab=99.75  E-value=4.4e-18  Score=140.27  Aligned_cols=108  Identities=19%  Similarity=0.338  Sum_probs=90.6

Q ss_pred             cccEEEEEEEEeecCCCCCCCCCCCCCcEEEEEEcC--CceEEEEeecCCCCCCccccEEEEeeeCC-CCCceEEEEEEe
Q 021710           17 ITHDLEITIICAKHLKNVNWRNGGDLKPYVVFYVDP--AYRLATQSDDSGSTRPVWNERFTLPITHS-VRESVLTLEIFH   93 (308)
Q Consensus        17 ~~~~L~VtIisAk~L~~~~~~~~~~~dPYv~v~l~~--~~k~kT~v~k~gt~nP~WnE~f~f~l~~~-~~~~~L~l~V~d   93 (308)
                      ..+.|+|+|++|++|+..+..+.  +||||++++.+  ..+++|+++++ +.||+|||+|.|.+... +....|.|+|||
T Consensus        32 ~~~~L~v~v~~a~~L~~~d~~g~--~dpyv~v~l~~~~~~~~kT~v~~~-t~nP~wne~f~f~v~~~~l~~~~L~i~V~d  108 (143)
T 3f04_A           32 QNNQLLVGIIQAAELPALDMGGT--SDPYVKVFLLPDKKKKFETKVHRK-TLNPVFNEQFTFKVPYSELGGKTLVMAVYD  108 (143)
T ss_dssp             TTTEEEEEEEEEECCCCBGGGBC--CCEEEEEEEESCCSCCEECCCCCS-CSSCEEEEEEEECCCHHHHTTCEEEEEEEE
T ss_pred             CCCEEEEEEEEecCCCCCCCCCC--cCcEEEEEEECCCCccEECccCcC-CCCCcCcCeEEEeecHhhcCCCEEEEEEEe
Confidence            45899999999999999887664  99999999943  46899999998 89999999999998742 235789999999


Q ss_pred             ccCCCCCCceeeeEEEeCcccccCCCCCCCceeEEEEEeC
Q 021710           94 SKLSETPKPLVGSVKFPLAHLVDSDSSEPTQYVRKLEVLR  133 (308)
Q Consensus        94 ~~~~~~~d~lLG~~~ipL~~L~~~~~~~~~~~~~~~~L~~  133 (308)
                      ++ ...++++||++.|+|.+|....     ....|++|..
T Consensus       109 ~d-~~~~~~~iG~~~i~l~~l~~~~-----~~~~W~~L~~  142 (143)
T 3f04_A          109 FD-RFSKHDIIGEFKVPMNTVDFGH-----VTEEWRDLQS  142 (143)
T ss_dssp             CC-SSSCCEEEEEEEEEGGGCCTTS-----CEEEEEECBC
T ss_pred             CC-CCCCCceEEEEEEEHHHccCCC-----CcceEEECcC
Confidence            98 3568999999999999997643     3468999863

>1rsy_A Synaptotagmin I; calcium/phospholipid binding protein; 1.90A {Rattus norvegicus} SCOP: b.7.1.2

Probab=99.75  E-value=6.4e-18  Score=141.05  Aligned_cols=108  Identities=19%  Similarity=0.338  Sum_probs=90.7

Q ss_pred             cccEEEEEEEEeecCCCCCCCCCCCCCcEEEEEEcC--CceEEEEeecCCCCCCccccEEEEeeeCC-CCCceEEEEEEe
Q 021710           17 ITHDLEITIICAKHLKNVNWRNGGDLKPYVVFYVDP--AYRLATQSDDSGSTRPVWNERFTLPITHS-VRESVLTLEIFH   93 (308)
Q Consensus        17 ~~~~L~VtIisAk~L~~~~~~~~~~~dPYv~v~l~~--~~k~kT~v~k~gt~nP~WnE~f~f~l~~~-~~~~~L~l~V~d   93 (308)
                      ..+.|+|+|++|++|...+..+.  +||||++++.+  ..+++|+++++ +.||+|||+|.|.+... +....|.|+|||
T Consensus        40 ~~~~L~V~v~~a~~L~~~d~~g~--~dpyv~v~~~~~~~~~~kT~v~~~-t~nP~wne~f~f~v~~~~l~~~~L~i~V~d  116 (152)
T 1rsy_A           40 QNNQLLVGIIQAAELPALDMGGT--SDPYVKVFLLPDKKKKFETKVHRK-TLNPVFNEQFTFKVPYSELGGKTLVMAVYD  116 (152)
T ss_dssp             TTTEEEEEEEEEESCCCCSTTSC--CCEEEEEEEETTCCSCEECCCCTT-CSSCEEEEEEEECCCHHHHTTCEEEEEEEE
T ss_pred             CCCEEEEEEEEeECCCCccCCCC--cCeEEEEEEEcCCCceEeccccCC-CCCCcCcccEEEeecHHHcCCCEEEEEEEE
Confidence            35799999999999999887664  99999999953  36889999998 89999999999998642 235789999999


Q ss_pred             ccCCCCCCceeeeEEEeCcccccCCCCCCCceeEEEEEeC
Q 021710           94 SKLSETPKPLVGSVKFPLAHLVDSDSSEPTQYVRKLEVLR  133 (308)
Q Consensus        94 ~~~~~~~d~lLG~~~ipL~~L~~~~~~~~~~~~~~~~L~~  133 (308)
                      ++ ...++++||++.|+|.++..+.     ....|++|..
T Consensus       117 ~d-~~~~~~~iG~~~i~l~~l~~~~-----~~~~W~~L~~  150 (152)
T 1rsy_A          117 FD-RFSKHDIIGEFKVPMNTVDFGH-----VTEEWRDLQS  150 (152)
T ss_dssp             CC-SSSCCEEEEEEEEEGGGCCCSS-----CEEEEEECBC
T ss_pred             CC-CCCCCcEEEEEEEEchhccCCC-----CcceEEECCC
Confidence            98 3568999999999999986543     3468999974

>2z0u_A WW domain-containing protein 1; C2 domain, alternative splicing, coiled coil, cytoplasm, phosphorylation, polymorphism, lipid binding protein; 2.20A {Homo sapiens}

Probab=99.75  E-value=2.2e-18  Score=145.14  Aligned_cols=108  Identities=19%  Similarity=0.267  Sum_probs=90.1

Q ss_pred             cccEEEEEEEEeecCCCCCCCCCCCCCcEEEEEEcC---C--ceEEEEeecCCCCCCccccEEEEeeeCC-CCCceEEEE
Q 021710           17 ITHDLEITIICAKHLKNVNWRNGGDLKPYVVFYVDP---A--YRLATQSDDSGSTRPVWNERFTLPITHS-VRESVLTLE   90 (308)
Q Consensus        17 ~~~~L~VtIisAk~L~~~~~~~~~~~dPYv~v~l~~---~--~k~kT~v~k~gt~nP~WnE~f~f~l~~~-~~~~~L~l~   90 (308)
                      ..+.|+|+|++|++|...+..+.  +||||++++.+   .  .++||+++++ +.||+|||+|.|.+... +....|.|+
T Consensus        41 ~~~~L~V~Vi~a~~L~~~d~~g~--sDPyVkv~l~~~~~~~~~~~kT~v~~~-tlnP~wnE~F~f~v~~~~l~~~~L~~~  117 (155)
T 2z0u_A           41 KNKQFAILIIQLSNLSALLQQQD--QKVNIRVAVLPCSESTTCLFRTRPLDA-SDTLVFNEVFWVSMSYPALHQKTLRVD  117 (155)
T ss_dssp             TTTEEEEEEEEEECGGGTCCSCC--SEEEEEEEEESCSCHHHHEEECCCEEC-CSSEEEEEEEEEECCHHHHHHCEEEEE
T ss_pred             CCCEEEEEEEEccCcCCcccCCC--CCEEEEEEEecCCCCCccceeCCcCCC-CCCCccccEEEEEcCHHHhCcCEEEEE
Confidence            35899999999999999887664  99999999965   2  3899999998 99999999999998742 235689999


Q ss_pred             EEeccCCCCCCceeeeEEEeCcccccCCCCCCCceeEEEEEe
Q 021710           91 IFHSKLSETPKPLVGSVKFPLAHLVDSDSSEPTQYVRKLEVL  132 (308)
Q Consensus        91 V~d~~~~~~~d~lLG~~~ipL~~L~~~~~~~~~~~~~~~~L~  132 (308)
                      |||++ ...++++||++.|+|.++.....    ....||.|.
T Consensus       118 V~d~d-~~~~~d~iG~~~i~l~~l~~~~~----~~~~W~~L~  154 (155)
T 2z0u_A          118 VCTTD-RSHLEECLGGAQISLAEVCRSGE----RSTRWYNLL  154 (155)
T ss_dssp             EEEEC-TTSCEEEEEEEEEECTTSCTTCC----CEEEEEEEB
T ss_pred             EEECC-CCCCCcEEEEEEEEHHHccCCCC----ccccceEcc
Confidence            99998 46789999999999999863221    346899985

>3fbk_A RGS3, RGP3, regulator of G-protein signaling 3; all beta-sheet fold, structural genomics, PSI-2, protein structure initiative; 2.00A {Homo sapiens} SCOP: b.7.1.0

Probab=99.74  E-value=3.9e-18  Score=142.63  Aligned_cols=110  Identities=20%  Similarity=0.303  Sum_probs=88.9

Q ss_pred             cccEEEEEEEEeecCCCCCCCCCCCCCcEEEEEEcC----CceEEEEeecCCCCCCccccEEEEeeeCCCCCceEEEEEE
Q 021710           17 ITHDLEITIICAKHLKNVNWRNGGDLKPYVVFYVDP----AYRLATQSDDSGSTRPVWNERFTLPITHSVRESVLTLEIF   92 (308)
Q Consensus        17 ~~~~L~VtIisAk~L~~~~~~~~~~~dPYv~v~l~~----~~k~kT~v~k~gt~nP~WnE~f~f~l~~~~~~~~L~l~V~   92 (308)
                      ..+.|+|+|++|++|...+ .+  .+||||++++.+    ..+.+|+++++ +.||+|||+|.|.+........|.|+||
T Consensus        25 ~~~~L~V~v~~a~~L~~~d-~g--~~Dpyv~v~l~~~~~~~~~~kT~v~~~-t~nP~wne~f~f~v~~~~~~~~L~i~V~  100 (153)
T 3fbk_A           25 QDRVLLLHIIEGKGLISKQ-PG--TCDPYVKISLIPEDSRLRHQKTQTVPD-CRDPAFHEHFFFPVQEEDDQKRLLVTVW  100 (153)
T ss_dssp             SSSEEEEEEEEEESCCCCS-SS--CCCEEEEEEEESCSCCTTCEECCCCTT-CSSCEEEEEEEEECCGGGTTSEEEEEEE
T ss_pred             CCCEEEEEEEEeeCCCCCC-CC--CCCEEEEEEEEcCCCCccEEeccccCC-CCCCccccEEEEecccHHhCCEEEEEEE
Confidence            4589999999999999888 44  599999999943    35899999998 9999999999999854323356999999


Q ss_pred             eccCCCCC-CceeeeEEEeCcccccCCCCCCCceeEEEEEeCCC
Q 021710           93 HSKLSETP-KPLVGSVKFPLAHLVDSDSSEPTQYVRKLEVLRPS  135 (308)
Q Consensus        93 d~~~~~~~-d~lLG~~~ipL~~L~~~~~~~~~~~~~~~~L~~~s  135 (308)
                      |++. ..+ |++||++.|+|.+|.....    ....||.|....
T Consensus       101 d~d~-~~~~d~~lG~~~i~l~~l~~~~~----~~~~W~~L~~~~  139 (153)
T 3fbk_A          101 NRAS-QSRQSGLIGCMSFGVKSLLTPDK----EISGWYYLLGEH  139 (153)
T ss_dssp             ECCS-SGGGCEEEEEEEEEHHHHTC--C----CEEEEEECBCTT
T ss_pred             eCCC-CCCCCcEEEEEEEEHHHhcCCCC----ccccEEECCChh
Confidence            9983 444 8999999999999975221    346899998654

>1v27_A Regulating synaptic membrane exocytosis protein 2; RAB3-interacting molecule, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.7.1.2

Probab=99.74  E-value=6.9e-18  Score=138.34  Aligned_cols=107  Identities=21%  Similarity=0.336  Sum_probs=89.0

Q ss_pred             ccEEEEEEEEeecCCCCCCCCCCCCCcEEEEEEcC----CceEEEEeecCCCCCCccccEEEEee-eC-CCCCceEEEEE
Q 021710           18 THDLEITIICAKHLKNVNWRNGGDLKPYVVFYVDP----AYRLATQSDDSGSTRPVWNERFTLPI-TH-SVRESVLTLEI   91 (308)
Q Consensus        18 ~~~L~VtIisAk~L~~~~~~~~~~~dPYv~v~l~~----~~k~kT~v~k~gt~nP~WnE~f~f~l-~~-~~~~~~L~l~V   91 (308)
                      .+.|+|+|++|++|...+..+.  +||||++++.+    ..+++|+++++ +.||+|||+|.|.+ .. .+....|.|+|
T Consensus        20 ~~~L~v~v~~a~~L~~~d~~g~--~dpyv~v~~~~~~~~~~~~kT~~~~~-t~nP~wne~f~f~~~~~~~~~~~~l~i~V   96 (141)
T 1v27_A           20 GHQLIVTILGAKDLPSREDGRP--RNPYVKIYFLPDRSDKNKRRTKTVKK-TLEPKWNQTFIYSPVHRREFRERMLEITL   96 (141)
T ss_dssp             TTEEEEEEEEEESCCCCSSSCC--CCEEEECCCSSCCSSSSCCBCCCCSS-CSSCCCCCCCEECSCCTTGGGTCEEEEEE
T ss_pred             CCEEEEEEEEccCCCCcCCCCC--CCCEEEEEEecCCCCCcceeCccccC-CCCCccccEEEEccCCHHHhcCCEEEEEE
Confidence            4889999999999999887764  99999999942    46889999998 99999999999995 32 23457899999


Q ss_pred             EeccCCCCC--CceeeeEEEeCcccccCCCCCCCceeEEEEEeCC
Q 021710           92 FHSKLSETP--KPLVGSVKFPLAHLVDSDSSEPTQYVRKLEVLRP  134 (308)
Q Consensus        92 ~d~~~~~~~--d~lLG~~~ipL~~L~~~~~~~~~~~~~~~~L~~~  134 (308)
                      ||++. ...  +++||++.|+|.++....      ...||+|...
T Consensus        97 ~d~d~-~~~~~~~~lG~~~i~l~~l~~~~------~~~W~~L~~~  134 (141)
T 1v27_A           97 WDQAR-VREEESEFLGEILIELETALLDD------EPHWYKLQTH  134 (141)
T ss_dssp             EEBCS-SSSCCBCCCEEEEEEGGGCCCSS------EEEEEECBCC
T ss_pred             EECCC-CcCCCCceEEEEEEEccccCCCC------CCceEECccc
Confidence            99983 444  899999999999986532      3689999864

>2bwq_A Regulating synaptic membrane exocytosis protein 2; C2 domain, neurotransmitter release, transport protein; 1.41A {Rattus norvegicus} SCOP: b.7.1.2

Probab=99.73  E-value=1.5e-17  Score=134.38  Aligned_cols=105  Identities=23%  Similarity=0.365  Sum_probs=84.7

Q ss_pred             ccEEEEEEEEeecCCCCCCCCCCCCCcEEEEEEcC----CceEEEEeecCCCCCCccccEEEEeeeC--CCCCceEEEEE
Q 021710           18 THDLEITIICAKHLKNVNWRNGGDLKPYVVFYVDP----AYRLATQSDDSGSTRPVWNERFTLPITH--SVRESVLTLEI   91 (308)
Q Consensus        18 ~~~L~VtIisAk~L~~~~~~~~~~~dPYv~v~l~~----~~k~kT~v~k~gt~nP~WnE~f~f~l~~--~~~~~~L~l~V   91 (308)
                      .+.|+|+|++|++|...+..+.  +||||++++.+    ..+.+|+++++ +.||+|||+|.|.+..  .+....|.|+|
T Consensus        17 ~~~L~v~v~~a~~L~~~d~~~~--~dpyv~v~~~~~~~~~~~~kT~v~~~-t~nP~wne~f~f~~~~~~~~~~~~l~~~V   93 (129)
T 2bwq_A           17 GHQLIVTILGAKDLPSREDGRP--RNPYVKIYFLPDRSDKNKRRTKTVKK-TLEPKWNQTFIYSPVHRREFRERMLEITL   93 (129)
T ss_dssp             TTEEEEEEEEEESCCCCTTSCC--BCEEEEEEEESSCSGGGEEECCCCSS-BSSCEEEEEEEECSCCGGGGGGCEEEEEE
T ss_pred             CCEEEEEEEEeeCCCCCCCCCC--CCCEEEEEEecCCCCCcceecccccC-CCCCccccEEEEccCCHHHhcCCeEEEEE
Confidence            4899999999999999887764  99999999932    47899999998 9999999999999532  23457899999


Q ss_pred             EeccCCCCC--CceeeeEEEeCcccccCCCCCCCceeEEEEEe
Q 021710           92 FHSKLSETP--KPLVGSVKFPLAHLVDSDSSEPTQYVRKLEVL  132 (308)
Q Consensus        92 ~d~~~~~~~--d~lLG~~~ipL~~L~~~~~~~~~~~~~~~~L~  132 (308)
                      ||++. ...  +++||++.|+|.++....      ...||+|.
T Consensus        94 ~d~d~-~~~~~~~~lG~~~i~l~~l~~~~------~~~W~~Lq  129 (129)
T 2bwq_A           94 WDQAR-VREEESEFLGEILIELETALLDD------EPHWYKLQ  129 (129)
T ss_dssp             EEC--------CEEEEEEEEEGGGCCCSS------CEEEEECC
T ss_pred             EECCc-CcCcCCceeEEEEEEccccCCCc------CCccEECc
Confidence            99983 444  899999999999987642      35899883

>2cjt_A UNC-13 homolog A, MUNC13-1; phorbol-ester binding, neurotransmitter release, RIM, MUNC13 domains, exocytosis, metal-binding; 1.44A {Rattus norvegicus} SCOP: b.7.1.1

Probab=99.73  E-value=1.3e-17  Score=136.60  Aligned_cols=118  Identities=18%  Similarity=0.263  Sum_probs=81.9

Q ss_pred             cEEEEEEEEeecCCCCCCCCCCCCCcEEEEEEcCCceEEEEeecCCCCCCccccEEEEeeeCCCCCceEEEEEEeccCCC
Q 021710           19 HDLEITIICAKHLKNVNWRNGGDLKPYVVFYVDPAYRLATQSDDSGSTRPVWNERFTLPITHSVRESVLTLEIFHSKLSE   98 (308)
Q Consensus        19 ~~L~VtIisAk~L~~~~~~~~~~~dPYv~v~l~~~~k~kT~v~k~gt~nP~WnE~f~f~l~~~~~~~~L~l~V~d~~~~~   98 (308)
                      +.|.|+|++|++|..   .+  .+||||+++.   ...+|+++++++.||+|||+|.|.+..  ....|.|+|||++  .
T Consensus         5 ~~L~V~V~~A~~l~~---~g--~~DPYv~v~~---~~~kt~~~~~~t~nP~WnE~f~f~v~~--~~~~L~~~V~D~d--~   72 (131)
T 2cjt_A            5 SLLCVGVKKAKFDGA---QE--KFNTYVTLKV---QNVKSTTIAVRGSQPSWEQDFMFEINR--LDLGLTVEVWNKG--L   72 (131)
T ss_dssp             EEEEEEEEEEECSSC---GG--GCEEEEEEEE---TTEEEECCCEESSSCEEEEEEEEEECC--CSSEEEEEEEECC--S
T ss_pred             eEEEEEEEEeECCCC---CC--CcCeEEEEEe---cCEEEeEecCCCCCceECCEEEEEEeC--CCCeEEEEEEECC--C
Confidence            689999999998852   33  4999999992   345666665448999999999999986  3567999999998  4


Q ss_pred             CCCceeeeEEEeCcccccCCCCC-CCceeEEEEEeCCCCCCccE-------EEEEEEE
Q 021710           99 TPKPLVGSVKFPLAHLVDSDSSE-PTQYVRKLEVLRPSGRPQGK-------IRVKLVL  148 (308)
Q Consensus        99 ~~d~lLG~~~ipL~~L~~~~~~~-~~~~~~~~~L~~~sg~~~G~-------L~v~v~~  148 (308)
                      ..|++||++.|+|++|....... ......|+.+..++|+.+|+       |.+.++|
T Consensus        73 ~~dd~iG~~~i~l~~l~~~~~~~~~~~~~~~~~~~~~~g~~~G~~~p~~~~~~~~~~~  130 (131)
T 2cjt_A           73 IWDTMVGTVWIPLRTIRQSNEEGPGEWLTLDSQAIMADSEICGTKDPTFHRILLDAHF  130 (131)
T ss_dssp             SCEEEEEEEEEEGGGSCBCSSCCCCEEEECBC----------CCSCCCCCEEEEEEEE
T ss_pred             CCCCeEEEEEEEHHHhhhcCCCCccccEEcccccccCCCcCcceECCCccEEEEEEEe
Confidence            58999999999999987643211 01223556666566776665       7777776

>2q3x_A Regulating synaptic membrane exocytosis protein 1; C2 domain dimer, neurotransmitter release, transport protein; HET: MSE; 1.73A {Rattus norvegicus}

Probab=99.73  E-value=1.4e-17  Score=142.00  Aligned_cols=108  Identities=19%  Similarity=0.272  Sum_probs=89.9

Q ss_pred             cccEEEEEEEEeecCCCCCC-CCCCCCCcEEEEEEcCC----ceEEEEeecCCCCCCccccEEEEeeeCCCCCceEEEEE
Q 021710           17 ITHDLEITIICAKHLKNVNW-RNGGDLKPYVVFYVDPA----YRLATQSDDSGSTRPVWNERFTLPITHSVRESVLTLEI   91 (308)
Q Consensus        17 ~~~~L~VtIisAk~L~~~~~-~~~~~~dPYv~v~l~~~----~k~kT~v~k~gt~nP~WnE~f~f~l~~~~~~~~L~l~V   91 (308)
                      ..+.|+|+|++|++|...+. .+  .+||||++++...    .+++|+++++ +.||+|||+|.|.+..  ....|.|+|
T Consensus        28 ~~~~L~V~v~~a~~L~~~d~~~g--~~DPyv~v~l~~~~~~~~~~kT~v~~~-t~nP~wne~f~f~v~~--~~~~L~~~V  102 (171)
T 2q3x_A           28 KKGQLEVEVIRARSLTQKPGSKS--TPAPYVKVYLLENGACIAKKKTRIARK-TLDPLYQQSLVFDESP--QGKVLQVIV  102 (171)
T ss_dssp             ETTEEEEEEEEEESCCCCC---C--CCEEEEEEEEEETTEEEEEEECCCCCS-CSSCEEEEEEECSSCC--TTEEEEEEE
T ss_pred             CCCEEEEEEEEeeCCCCCCcCCC--CCCceEEEEEECCCccccceeCccCCC-CCCCCCCcEEEEEecC--CCCEEEEEE
Confidence            35889999999999999885 44  4999999999753    3889999998 8999999999999865  468899999


Q ss_pred             E-eccCCCCCCceeeeEEEeCcccccCCCCCCCceeEEEEEeCCC
Q 021710           92 F-HSKLSETPKPLVGSVKFPLAHLVDSDSSEPTQYVRKLEVLRPS  135 (308)
Q Consensus        92 ~-d~~~~~~~d~lLG~~~ipL~~L~~~~~~~~~~~~~~~~L~~~s  135 (308)
                      | |++ ...++++||++.|+|.++....     ....||+|...+
T Consensus       103 ~~d~d-~~~~d~~iG~~~i~l~~l~~~~-----~~~~W~~L~~~~  141 (171)
T 2q3x_A          103 WGDYG-RMDHKCFMGVAQILLEELDLSS-----MVIGWYKLFPPS  141 (171)
T ss_dssp             EEECS-TTCSSEEEEEEEECGGGSCTTS-----CEEEEEECBCGG
T ss_pred             EEcCC-CCCCCCEEEEEEEEHHHcccCC-----CcceeEECCCcc
Confidence            9 888 4668899999999999997543     346899997643

>2chd_A Rabphilin-3A, exophilin-1; C2 domain, C2A, calcium binding, synaptic EXOC metal-binding, protein transport, synapse, transport, zinc-; 1.92A {Rattus norvegicus} PDB: 2k3h_A

Probab=99.73  E-value=1.3e-17  Score=137.34  Aligned_cols=108  Identities=25%  Similarity=0.393  Sum_probs=89.3

Q ss_pred             cccEEEEEEEEeecCCCCCCCCCCCCCcEEEEEEcC----CceEEEEeecCCCCCCccccEEEEe-eeCC-CCCceEEEE
Q 021710           17 ITHDLEITIICAKHLKNVNWRNGGDLKPYVVFYVDP----AYRLATQSDDSGSTRPVWNERFTLP-ITHS-VRESVLTLE   90 (308)
Q Consensus        17 ~~~~L~VtIisAk~L~~~~~~~~~~~dPYv~v~l~~----~~k~kT~v~k~gt~nP~WnE~f~f~-l~~~-~~~~~L~l~   90 (308)
                      ..+.|+|+|++|++|+..+..+.  +||||++++.+    ..+++|+++++ +.||+|||+|.|. +... +....|.|+
T Consensus        27 ~~~~L~V~v~~a~~L~~~d~~g~--~dpyv~v~~~~~~~~~~~~kT~v~~~-t~nP~wne~f~f~~~~~~~~~~~~l~i~  103 (142)
T 2chd_A           27 DNSNLQCTIIRAKGLKPMDSNGL--ADPYVKLHLLPGASKSNKLRTKTLRN-TRNPVWNETLQYHGITEEDMQRKTLRIS  103 (142)
T ss_dssp             GGTEEEEEEEEEESCCCCCTTSC--CCEEEEEEEESCCSGGGEEECCCCCS-CSSCEEEEEEEEESCCHHHHHHCEEEEE
T ss_pred             CCCEEEEEEEEecCCCCCCCCCC--CCCEEEEEEEcCCCCcceeeCCcCCC-CCCCcCcCEEEEcccCHHHccCCEEEEE
Confidence            45899999999999999887664  99999999975    37899999998 9999999999998 5432 123689999


Q ss_pred             EEeccCCCCCCceeeeEEEeCcccccCCCCCCCceeEEEEEeC
Q 021710           91 IFHSKLSETPKPLVGSVKFPLAHLVDSDSSEPTQYVRKLEVLR  133 (308)
Q Consensus        91 V~d~~~~~~~d~lLG~~~ipL~~L~~~~~~~~~~~~~~~~L~~  133 (308)
                      |||++ ...++++||++.|+|.+|..+.     ....|+.|.+
T Consensus       104 V~d~d-~~~~d~~iG~~~i~l~~l~~~~-----~~~~~~~L~~  140 (142)
T 2chd_A          104 VCDED-KFGHNEFIGETRFSLKKLKANQ-----RKNFNICLER  140 (142)
T ss_dssp             EEEEC-TTSCEEEEEEEEEEGGGCCTTC-----CEEEEEECBC
T ss_pred             EEECC-CCCCCcEEEEEEEEHHHcCCCC-----ccEEEEeccc
Confidence            99998 3567899999999999997643     3457787754

>1ugk_A Synaptotagmin IV, KIAA1342; beta sandwich, structural genomics, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Homo sapiens} SCOP: b.7.1.2

Probab=99.73  E-value=3.7e-17  Score=133.99  Aligned_cols=110  Identities=19%  Similarity=0.320  Sum_probs=89.8

Q ss_pred             cccEEEEEEEEeecCCCCCCCCCCCCCcEEEEEEcC--CceEEEEeecCCCCCCccccEEEEe-eeCC-CCCceEEEEEE
Q 021710           17 ITHDLEITIICAKHLKNVNWRNGGDLKPYVVFYVDP--AYRLATQSDDSGSTRPVWNERFTLP-ITHS-VRESVLTLEIF   92 (308)
Q Consensus        17 ~~~~L~VtIisAk~L~~~~~~~~~~~dPYv~v~l~~--~~k~kT~v~k~gt~nP~WnE~f~f~-l~~~-~~~~~L~l~V~   92 (308)
                      ..+.|+|+|++|++|+..+..++ .+||||++++.+  ..+++|+++++ +.||+|||+|.|. +... +....|.|+||
T Consensus        20 ~~~~L~v~v~~a~~L~~~d~~~~-~~dpyv~v~~~~~~~~~~kT~v~~~-t~nP~wne~f~f~~v~~~~~~~~~l~i~V~   97 (138)
T 1ugk_A           20 ERKAFVVNIKEARGLPAMDEQSM-TSDPYIKMTILPEKKHKVKTRVLRK-TLDPAFDETFTFYGIPYTQIQELALHFTIL   97 (138)
T ss_dssp             GGTEEEEEEEEEESCCCCBTTTT-BCEEEEEEEEETTTCSEEECCCCSS-CSSCEEEEEEEEECCCSTTGGGCEEEEEEE
T ss_pred             CCCEEEEEEEEeeCCCCCCCCCC-CCCCEEEEEEecCCCceEecCcCcC-CCCCcEeeEEEEcCcCHHHhccCEEEEEEE
Confidence            35889999999999999887522 499999999964  47999999998 9999999999996 6542 34568999999


Q ss_pred             eccCCCCCCceeeeEEEeCcccccCCCCCCCceeEEEEEeC
Q 021710           93 HSKLSETPKPLVGSVKFPLAHLVDSDSSEPTQYVRKLEVLR  133 (308)
Q Consensus        93 d~~~~~~~d~lLG~~~ipL~~L~~~~~~~~~~~~~~~~L~~  133 (308)
                      |++ ...++++||++.|+|.+|.....    ....|+.|..
T Consensus        98 d~d-~~~~~~~lG~~~i~l~~l~~~~~----~~~~~~~l~~  133 (138)
T 1ugk_A           98 SFD-RFSRDDIIGEVLIPLSGIELSEG----KMLMNREIIS  133 (138)
T ss_dssp             EEC-SSCCCCCCEEEEEECTTCCCTTC----CEEEEEECBS
T ss_pred             ECC-CCCCCcEEEEEEEehhHccCCCC----cchhhhhhhc
Confidence            998 36688999999999999976532    2356788864

>1rh8_A Piccolo protein; beta-sandwich, metal binding protein; NMR {Rattus norvegicus} SCOP: b.7.1.2

Probab=99.73  E-value=2.7e-18  Score=141.21  Aligned_cols=109  Identities=20%  Similarity=0.313  Sum_probs=90.0

Q ss_pred             ccEEEEEEEEeecCCCCCCCCCCCCCcEEEEEEcCC-------------ceEEEEeecCCCCCCccccEEEEe-eeCC-C
Q 021710           18 THDLEITIICAKHLKNVNWRNGGDLKPYVVFYVDPA-------------YRLATQSDDSGSTRPVWNERFTLP-ITHS-V   82 (308)
Q Consensus        18 ~~~L~VtIisAk~L~~~~~~~~~~~dPYv~v~l~~~-------------~k~kT~v~k~gt~nP~WnE~f~f~-l~~~-~   82 (308)
                      .+.|+|+|++|++|...+..+.  +||||++++.+.             .+.+|+++++ +.||+|||+|.|. +... +
T Consensus        17 ~~~L~V~v~~a~~L~~~d~~g~--~Dpyv~v~~~~~~~~~~~~~~~~~~~~~kT~v~~~-t~nP~wne~f~f~~v~~~~l   93 (142)
T 1rh8_A           17 LGNLIIHILQARNLVPRDNNGY--SDPFVKVYLLPGRGQVMVVQNASAEYKRRTKYVQK-SLNPEWNQTVIYKSISMEQL   93 (142)
T ss_dssp             TTEEEEEEEEEESCCCCSSSSC--SCCEEEEEETTSSCCCEECCCCCHHHHTTTTTTHH-HHSCEEEEEEEECSCCHHHH
T ss_pred             CCEEEEEEEEecCCCCCCCCCC--CCceEEEEEecCCCcccccccccccceeeccccCC-CCCCCCCCEEEECCcCHHHc
Confidence            4789999999999999887764  999999999863             3578999998 9999999999997 5431 2


Q ss_pred             CCceEEEEEEeccCCCCCCceeeeEEEeCcccccCCCCCCCceeEEEEEeCCC
Q 021710           83 RESVLTLEIFHSKLSETPKPLVGSVKFPLAHLVDSDSSEPTQYVRKLEVLRPS  135 (308)
Q Consensus        83 ~~~~L~l~V~d~~~~~~~d~lLG~~~ipL~~L~~~~~~~~~~~~~~~~L~~~s  135 (308)
                      ....|.|+|||++ ...++++||++.|+|.++.....     ...||+|...+
T Consensus        94 ~~~~l~i~V~d~d-~~~~~~~lG~~~i~l~~l~~~~~-----~~~W~~L~~~~  140 (142)
T 1rh8_A           94 MKKTLEVTVWDYD-RFSSNDFLGEVLIDLSSTSHLDN-----TPRWYPLKEQT  140 (142)
T ss_dssp             TTCEEEEEEEEEC-SSSCEEEEEEEEEETTSCGGGTT-----CCEEEECBCCC
T ss_pred             cCCEEEEEEEECC-CCCCCceEEEEEEeccccccCCC-----CCeEEECCccC
Confidence            4578999999998 35688999999999999876432     35899997543

>3fdw_A Synaptotagmin-like protein 4; structural genomics, phospholipid binding, alternative splicing, cell membrane, cytoplasmic vesicle, membrane; 2.20A {Homo sapiens}

Probab=99.73  E-value=9.6e-18  Score=139.26  Aligned_cols=109  Identities=16%  Similarity=0.260  Sum_probs=90.1

Q ss_pred             ccEEEEEEEEeecCCCCC-CCCCCCCCcEEEEEEcC----CceEEEEeecCCCCCCccccEEEEeeeCC-CCCceEEEEE
Q 021710           18 THDLEITIICAKHLKNVN-WRNGGDLKPYVVFYVDP----AYRLATQSDDSGSTRPVWNERFTLPITHS-VRESVLTLEI   91 (308)
Q Consensus        18 ~~~L~VtIisAk~L~~~~-~~~~~~~dPYv~v~l~~----~~k~kT~v~k~gt~nP~WnE~f~f~l~~~-~~~~~L~l~V   91 (308)
                      .+.|+|+|++|++|...+ ..+  .+||||++++.+    ..+.+|+++++ +.||+|||+|.|.+... +....|.|+|
T Consensus        22 ~~~L~V~v~~a~~L~~~d~~~~--~~dpyv~v~l~~~~~~~~~~kT~v~~~-t~nP~wne~f~f~v~~~~~~~~~L~~~V   98 (148)
T 3fdw_A           22 TQSLVVHVKECHQLAYADEAKK--RSNPYVKTYLLPDKSRQGKRKTSIKRD-TVNPLYDETLRYEIPESLLAQRTLQFSV   98 (148)
T ss_dssp             TTEEEEEEEEEESCCCSBTTTT--BCCEEEEEEEETCCSGGGEEECCCCSS-CSSCEEEEEEEEECCSTTGGGCEEEEEE
T ss_pred             CCEEEEEEEEecCCCCcccCCC--CCCeEEEEEEEcCCcccCccccccCCC-CCCCcEeeEEEEEeChhHhCceEEEEEE
Confidence            589999999999999877 344  599999999974    24899999998 99999999999998763 2356799999


Q ss_pred             EeccCCCCCCceeeeEEEeCcccccCCCCCCCceeEEEEEeCCC
Q 021710           92 FHSKLSETPKPLVGSVKFPLAHLVDSDSSEPTQYVRKLEVLRPS  135 (308)
Q Consensus        92 ~d~~~~~~~d~lLG~~~ipL~~L~~~~~~~~~~~~~~~~L~~~s  135 (308)
                      ||++. ..++++||++.|+|.++.....     ...||+|....
T Consensus        99 ~d~d~-~~~~~~iG~~~i~l~~l~~~~~-----~~~W~~L~~~~  136 (148)
T 3fdw_A           99 WHHGR-FGRNTFLGEAEIQMDSWKLDKK-----LDHCLPLHGKI  136 (148)
T ss_dssp             EEECG-GGCEEEEEEEEEEHHHHHHHCC-----SEEEEECBCC-
T ss_pred             EECCC-CcCCcEEEEEEEEcccccccCC-----ccceEECcCcc
Confidence            99983 5688999999999999976432     35899997543

>1wfm_A Synaptotagmin XIII; C2 domain, exocytosis, neurotransmitter release, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: b.7.1.2

Probab=99.73  E-value=4.1e-17  Score=134.18  Aligned_cols=105  Identities=17%  Similarity=0.174  Sum_probs=85.7

Q ss_pred             ccEEEEEEEEeecCCCCCCCCCCCCCcEEEEEEcC---CceEEEEeecCCCCCCccccEEEEeeeCC-CCCceEEEEEEe
Q 021710           18 THDLEITIICAKHLKNVNWRNGGDLKPYVVFYVDP---AYRLATQSDDSGSTRPVWNERFTLPITHS-VRESVLTLEIFH   93 (308)
Q Consensus        18 ~~~L~VtIisAk~L~~~~~~~~~~~dPYv~v~l~~---~~k~kT~v~k~gt~nP~WnE~f~f~l~~~-~~~~~L~l~V~d   93 (308)
                      .+.|+|+|++|++   .+..+  .+||||++++.+   ..+++|+++++ +.||+|||+|.|.+... +....|.|+|||
T Consensus        25 ~~~L~V~v~~a~~---~d~~g--~sDPyv~v~l~~~~~~~~~kT~v~~~-tlnP~wnE~f~f~v~~~~l~~~~L~~~V~d   98 (138)
T 1wfm_A           25 KAELFVTRLEAVT---SNHDG--GCDCYVQGSVANRTGSVEAQTALKKR-QLHTTWEEGLVLPLAEEELPTATLTLTLRT   98 (138)
T ss_dssp             TTEEEEEEEEEEC---CCCSS--CCCEEEEEEEEETTEEEEEECCCCCC-CSSEECSSCEEEECCTTSSTTCEEEEEEEE
T ss_pred             CCEEEEEEEEEEc---CCCCC--CcceEEEEEEEcCCCcccEecccCcC-CCCCcCCceEEEEecHHHcCCCEEEEEEEE
Confidence            5899999999994   44444  499999999943   34789999998 99999999999998753 345789999999


Q ss_pred             ccCCCCCCceeeeEEEeCcccccCCCCCCCceeEEEEEeCC
Q 021710           94 SKLSETPKPLVGSVKFPLAHLVDSDSSEPTQYVRKLEVLRP  134 (308)
Q Consensus        94 ~~~~~~~d~lLG~~~ipL~~L~~~~~~~~~~~~~~~~L~~~  134 (308)
                      ++ ...++++||++.|+|.++....     ....|+.|...
T Consensus        99 ~d-~~~~dd~lG~~~i~l~~l~~~~-----~~~~W~~L~~~  133 (138)
T 1wfm_A           99 CD-RFSRHSVAGELRLGLDGTSVPL-----GAAQWGELKTS  133 (138)
T ss_dssp             CC-SSCTTSCSEEEEEESSSSSSCT-----TCCEEEECCCC
T ss_pred             CC-CCCCCcEEEEEEEEcccccCcc-----cccceeeCcCC
Confidence            98 4678999999999999986433     23589999754

>2enp_A B/K protein; C2 type 1,beta sandwich, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.72  E-value=2.1e-17  Score=136.98  Aligned_cols=107  Identities=20%  Similarity=0.272  Sum_probs=86.0

Q ss_pred             ccEEEEEEEEeecCCCC-C------CCCCCCCCcEEEEEEcC--CceEEEEeecCCCCCCccccEEEEeeeCC-CCCceE
Q 021710           18 THDLEITIICAKHLKNV-N------WRNGGDLKPYVVFYVDP--AYRLATQSDDSGSTRPVWNERFTLPITHS-VRESVL   87 (308)
Q Consensus        18 ~~~L~VtIisAk~L~~~-~------~~~~~~~dPYv~v~l~~--~~k~kT~v~k~gt~nP~WnE~f~f~l~~~-~~~~~L   87 (308)
                      .+.|+|+|++|++|+.. +      ..+  .+||||++++.+  ..+++|+++++ +.||+|||+|.|.+... +....|
T Consensus        25 ~~~L~V~v~~a~~L~~~~d~~g~~~~~~--~~dpyv~v~l~~~~~~~~kT~v~~~-t~nP~wne~f~f~v~~~~l~~~~L  101 (147)
T 2enp_A           25 HNHLTVRVIEARDLPPPISHDGSRQDMA--HSNPYVKICLLPDQKNSKQTGVKRK-TQKPVFEERYTFEIPFLEAQRRTL  101 (147)
T ss_dssp             TTEEEEEEEEEECCCCSCSSCCSSCTTC--CCCCEEEEEEETCCSSCEECCCCCS-CSSCCCCBCCEECCCHHHHHHSEE
T ss_pred             CCEEEEEEEEEeCCCCccccccccccCC--CCCcEEEEEEEeCCCcceEeecccC-CCCCeEeeeEEEEeChHHhccCEE
Confidence            57999999999999874 2      223  499999999974  36889999998 99999999999998642 234589


Q ss_pred             EEEEEeccCCCCCCceeeeEEEeCcccccCCCCCCCceeEEEEEeC
Q 021710           88 TLEIFHSKLSETPKPLVGSVKFPLAHLVDSDSSEPTQYVRKLEVLR  133 (308)
Q Consensus        88 ~l~V~d~~~~~~~d~lLG~~~ipL~~L~~~~~~~~~~~~~~~~L~~  133 (308)
                      .|+|||++ ...++++||++.|+|.+|.....     ...|+.|..
T Consensus       102 ~~~V~d~d-~~~~~~~iG~~~i~l~~l~~~~~-----~~~w~~L~~  141 (147)
T 2enp_A          102 LLTVVDFD-KFSRHCVIGKVSVPLCEVDLVKG-----GHWWKALIP  141 (147)
T ss_dssp             EEEEECCS-TTCCSCCCEEEEEETTTSCTTTC-----CCEEECCBC
T ss_pred             EEEEEECC-CCcCCcEEEEEEEechhcCCCCC-----ccEEEEeec
Confidence            99999998 45688999999999999965432     247887763

>2r83_A Synaptotagmin-1; C2A-C2B, exocytosis, calcium, cell junction, cytoplasmic vesicle, glycoprotein, lipoprotein, membrane, metal-binding palmitate; 2.70A {Homo sapiens} SCOP: b.7.1.2

Probab=99.72  E-value=1.2e-16  Score=145.82  Aligned_cols=125  Identities=19%  Similarity=0.306  Sum_probs=103.8

Q ss_pred             cccEEEEEEEEeecCCCCCCCCCCCCCcEEEEEEcC--CceEEEEeecCCCCCCccccEEEEeeeCC-CCCceEEEEEEe
Q 021710           17 ITHDLEITIICAKHLKNVNWRNGGDLKPYVVFYVDP--AYRLATQSDDSGSTRPVWNERFTLPITHS-VRESVLTLEIFH   93 (308)
Q Consensus        17 ~~~~L~VtIisAk~L~~~~~~~~~~~dPYv~v~l~~--~~k~kT~v~k~gt~nP~WnE~f~f~l~~~-~~~~~L~l~V~d   93 (308)
                      ..+.|+|+|++|++|...+..+.  +||||++++.+  ..+.+|+++++ +.||+|||+|.|.+... +....|.|+|||
T Consensus        17 ~~~~L~v~v~~a~~L~~~d~~~~--~dpyv~v~~~~~~~~~~~T~~~~~-~~nP~wne~f~f~v~~~~~~~~~l~~~V~d   93 (284)
T 2r83_A           17 QNNQLLVGIIQAAELPALDMGGT--SDPYVKVFLLPDKKKKFETKVHRK-TLNPVFNEQFTFKVPYSELAGKTLVMAVYD   93 (284)
T ss_dssp             TTTEEEEEEEEEECCCCCSSSSS--CCEEEEEEEETCTTSCEECCCCCS-CSSCEEEEEEEECCCGGGCTTCEEEEEEEE
T ss_pred             CCCEEEEEEEEeeCCCCCCCCCC--CCeEEEEEEEcCCCceEeCCcccC-CCCCeeCceEEEEechHHhCcCEEEEEEEE
Confidence            35899999999999999887664  99999999964  35889999998 89999999999998753 345789999999


Q ss_pred             ccCCCCCCceeeeEEEeCcccccCCCCCCCceeEEEEEeCCCC---CCccEEEEEEEEcc
Q 021710           94 SKLSETPKPLVGSVKFPLAHLVDSDSSEPTQYVRKLEVLRPSG---RPQGKIRVKLVLNG  150 (308)
Q Consensus        94 ~~~~~~~d~lLG~~~ipL~~L~~~~~~~~~~~~~~~~L~~~sg---~~~G~L~v~v~~~~  150 (308)
                      ++ ....+++||++.|+|.+|....     ....|+.|....+   ...|+|.+++.+..
T Consensus        94 ~d-~~~~~~~lG~~~i~l~~l~~~~-----~~~~w~~L~~~~~~~~~~~G~i~l~l~~~p  147 (284)
T 2r83_A           94 FD-RFSKHDIIGEFKVPMNTVDFGH-----VTEEWRDLQSAEKEEQEKLGDICFSLRYVP  147 (284)
T ss_dssp             CC-SSSCCCEEEEEEEEGGGCCCSS-----CEEEEEECBCCSSCCCCCCCEEEEEEEEET
T ss_pred             CC-CCCCCceeEEEEEcchhcccCC-----cceeEEEeeccccccccccccEEEEEEecC
Confidence            98 3568999999999999997643     3468999986532   35799999988864

>1tjx_A Similar to synaptotagmini/P65; C2B domain, calcium binding, endocytosis-EX complex; HET: GOL; 1.04A {Rattus norvegicus} SCOP: b.7.1.2 PDB: 1tjm_A* 1uov_A 1uow_A 1k5w_A 2lha_A*

Probab=99.72  E-value=4.7e-17  Score=136.67  Aligned_cols=110  Identities=15%  Similarity=0.222  Sum_probs=88.9

Q ss_pred             cccEEEEEEEEeecCCCCCCCCCCCCCcEEEEEEcCC----ceEEEEeecCCCCCCccccEEEEeeeCC-CCCceEEEEE
Q 021710           17 ITHDLEITIICAKHLKNVNWRNGGDLKPYVVFYVDPA----YRLATQSDDSGSTRPVWNERFTLPITHS-VRESVLTLEI   91 (308)
Q Consensus        17 ~~~~L~VtIisAk~L~~~~~~~~~~~dPYv~v~l~~~----~k~kT~v~k~gt~nP~WnE~f~f~l~~~-~~~~~L~l~V   91 (308)
                      ..+.|+|+|++|++|...+..+.  +||||++++.+.    .+.+|+++++ +.||+|||+|.|.+... +....|.|+|
T Consensus        23 ~~~~L~V~v~~a~~L~~~d~~g~--~dpyv~v~l~~~~~~~~~~kT~v~~~-t~nP~wne~f~f~v~~~~l~~~~l~i~V   99 (159)
T 1tjx_A           23 TAGKLTVVILEAKNLKKMDVGGL--SDPYVKIHLMQNGKRLKKKKTTIKKN-TLNPYYNESFSFEVPFEQIQKVQVVVTV   99 (159)
T ss_dssp             TTTEEEEEEEEEESCCCCSTTSC--CCEEEEEEEEETTEEEEEEECCCCCS-CSSCEEEEEEEEECCGGGGGGCEEEEEE
T ss_pred             CCCEEEEEEEEeeCCCCccCCCC--CCeEEEEEEEeCCceeceeeCceecC-CCCCcccceEEEEcCHHHhCCcEEEEEE
Confidence            35799999999999999887664  999999999642    4789999998 99999999999998653 2356899999


Q ss_pred             EeccCCCCCCceeeeEEEeCccc----------ccCCCCCCCceeEEEEEeC
Q 021710           92 FHSKLSETPKPLVGSVKFPLAHL----------VDSDSSEPTQYVRKLEVLR  133 (308)
Q Consensus        92 ~d~~~~~~~d~lLG~~~ipL~~L----------~~~~~~~~~~~~~~~~L~~  133 (308)
                      ||++ ....+++||++.|+|..+          +.....   ....|+.|..
T Consensus       100 ~d~d-~~~~~~~iG~~~i~l~~~~~~~~~w~~l~~~~~~---~~~~W~~L~~  147 (159)
T 1tjx_A          100 LDYD-KIGKNDAIGKVFVGYNSTGAELRHWSDMLANPRR---PIAQWHTLQV  147 (159)
T ss_dssp             EECC-SSSCCEEEEEEEEETTCCHHHHHHHHHHHHSTTC---CEEEEEECBC
T ss_pred             EECC-CCCCCceEEEEEECCCCCCcHHHHHHHHHHCCCC---eeeeEEECcC
Confidence            9998 356899999999999853          332222   4568999964

>2dmg_A KIAA1228 protein; beta-sandwich, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.72  E-value=2e-17  Score=136.14  Aligned_cols=113  Identities=20%  Similarity=0.313  Sum_probs=89.4

Q ss_pred             ccEEEEEEEEeecCCCCCCCCCCCCCcEEEEEEcC----CceEEEEeecCCCCCCccccEEEEeeeCC-CCCceEEEEEE
Q 021710           18 THDLEITIICAKHLKNVNWRNGGDLKPYVVFYVDP----AYRLATQSDDSGSTRPVWNERFTLPITHS-VRESVLTLEIF   92 (308)
Q Consensus        18 ~~~L~VtIisAk~L~~~~~~~~~~~dPYv~v~l~~----~~k~kT~v~k~gt~nP~WnE~f~f~l~~~-~~~~~L~l~V~   92 (308)
                      .+.|+|+|++|++|...+..+   +||||++++.+    ..+++|+++++ +.||+|||+|.|.+... +....|.|+||
T Consensus        23 ~~~L~v~v~~a~~L~~~d~~g---~dpyv~v~l~~~~~~~~~~kT~v~~~-t~nP~wne~f~f~v~~~~l~~~~L~i~V~   98 (142)
T 2dmg_A           23 RNKLIVVVHACRNLIAFSEDG---SDPYVRMYLLPDKRRSGRRKTHVSKK-TLNPVFDQSFDFSVSLPEVQRRTLDVAVK   98 (142)
T ss_dssp             TTEEEEEEEEEECCCCSSTTC---CCEEEEEEEESCCCSSSCEECCCCCS-CSSCEEEEEEEECCCHHHHHHCEEEEEEE
T ss_pred             CCEEEEEEEEeECCCCCCCCC---CCeeEEEEEEcCCCCCCcccCCccCC-CCCCCcCceEEEEecHHHhCcCEEEEEEE
Confidence            578999999999999887642   89999999953    26889999998 99999999999998642 23458999999


Q ss_pred             eccCCCC-CCceeeeEEEeCcccccCCCCCCCceeEEEEEeCCCCCCc
Q 021710           93 HSKLSET-PKPLVGSVKFPLAHLVDSDSSEPTQYVRKLEVLRPSGRPQ  139 (308)
Q Consensus        93 d~~~~~~-~d~lLG~~~ipL~~L~~~~~~~~~~~~~~~~L~~~sg~~~  139 (308)
                      |++.... .+++||++.|+|.++....     ....|+.|....++..
T Consensus        99 d~d~~~~~~~~~iG~~~i~l~~~~~~~-----~~~~W~~L~~~~~~~~  141 (142)
T 2dmg_A           99 NSGGFLSKDKGLLGKVLVALASEELAK-----GWTQWYDLTEDSGPSS  141 (142)
T ss_dssp             ECCCSSCCSCCCCEEEEEECCCSTTTT-----CBCCBCCCBCSCSCCC
T ss_pred             ECCCccccCCcEEEEEEEecccccccc-----cccceeeccCCCCCCC
Confidence            9984222 3579999999999987643     2358999986554433

>3n5a_A Synaptotagmin-7; calcium/phospholipid binding protein, protein transport; 1.44A {Mus musculus}

Probab=99.71  E-value=4.9e-17  Score=132.62  Aligned_cols=95  Identities=18%  Similarity=0.355  Sum_probs=80.8

Q ss_pred             cccEEEEEEEEeecCCCCCCCCCCCCCcEEEEEEcCC----ceEEEEeecCCCCCCccccEEEEeeeCC-CCCceEEEEE
Q 021710           17 ITHDLEITIICAKHLKNVNWRNGGDLKPYVVFYVDPA----YRLATQSDDSGSTRPVWNERFTLPITHS-VRESVLTLEI   91 (308)
Q Consensus        17 ~~~~L~VtIisAk~L~~~~~~~~~~~dPYv~v~l~~~----~k~kT~v~k~gt~nP~WnE~f~f~l~~~-~~~~~L~l~V   91 (308)
                      ..+.|+|+|++|++|+..+..+.  +||||++++.+.    .+.+|+++++ +.||+|||+|.|.+... +....|.|+|
T Consensus        14 ~~~~L~v~v~~a~~L~~~d~~g~--~dpyv~v~~~~~~~~~~~~kT~~~~~-t~nP~wne~f~f~v~~~~l~~~~l~~~V   90 (138)
T 3n5a_A           14 SANSIIVNIIKARNLKAMDIGGT--SDPYVKVWLMYKDKRVEKKKTVTKKR-NLNPIFNESFAFDIPTEKLRETTIIITV   90 (138)
T ss_dssp             TTTEEEEEEEEEESCCCCBTTTB--CCEEEEEEEEETTEEEEEEECCCCSS-CSSCEEEEEEEEECCGGGGGGEEEEEEE
T ss_pred             CCCeEEEEEEEeeCCCCcCCCCC--cCeEEEEEEEeCCCccceEeCccccC-CCCCcCcceEEEECChhhcCceEEEEEE
Confidence            35899999999999999887654  999999999752    5789999998 89999999999998753 2346899999


Q ss_pred             EeccCCCCCCceeeeEEEeCcccc
Q 021710           92 FHSKLSETPKPLVGSVKFPLAHLV  115 (308)
Q Consensus        92 ~d~~~~~~~d~lLG~~~ipL~~L~  115 (308)
                      ||++ ...+|++||++.|+|+++.
T Consensus        91 ~d~~-~~~~~~~lG~~~i~l~~~~  113 (138)
T 3n5a_A           91 MDKD-KLSRNDVIGKIYLSWKSGP  113 (138)
T ss_dssp             EECC-SSSCCEEEEEEEESSSSCH
T ss_pred             EECC-CCCCCcEEEEEEEccccCC
Confidence            9998 3568999999999998643

>2cm5_A Rabphilin-3A; protein transport, zinc-finger, Ca2+ binding, metal-binding, synaptic exocytosis, C2A-C2B linker fragment, C2B, zinc, synapse; 1.28A {Rattus norvegicus} SCOP: b.7.1.2 PDB: 2cm6_A 3rpb_A

Probab=99.71  E-value=8.3e-17  Score=136.19  Aligned_cols=94  Identities=20%  Similarity=0.360  Sum_probs=81.5

Q ss_pred             cccEEEEEEEEeecCCCCCCCCCCCCCcEEEEEEcC----CceEEEEeecCCCCCCccccEEEEeeeCC-CCCceEEEEE
Q 021710           17 ITHDLEITIICAKHLKNVNWRNGGDLKPYVVFYVDP----AYRLATQSDDSGSTRPVWNERFTLPITHS-VRESVLTLEI   91 (308)
Q Consensus        17 ~~~~L~VtIisAk~L~~~~~~~~~~~dPYv~v~l~~----~~k~kT~v~k~gt~nP~WnE~f~f~l~~~-~~~~~L~l~V   91 (308)
                      ..+.|+|+|++|++|...+..+.  +||||++++.+    ..+.+|+++++ +.||+|||+|.|.+... +....|.|+|
T Consensus        35 ~~~~L~V~v~~a~~L~~~d~~g~--~DPyv~v~l~~~~~~~~~~kT~v~~~-t~nP~wne~f~f~v~~~~l~~~~L~i~V  111 (166)
T 2cm5_A           35 QQGGLIVGIIRCVHLAAMDANGY--SDPFVKLWLKPDMGKKAKHKTQIKKK-TLNPEFNEEFFYDIKHSDLAKKSLDISV  111 (166)
T ss_dssp             TTTEEEEEEEEEESCCCCSTTSC--CCEEEEEEEETC---CCEEECCCCCS-CSSCEEEEEEEEECCGGGGGGCEEEEEE
T ss_pred             CCCEEEEEEEEeECCCCccCCCC--CCcEEEEEEECCCCccceEeCCcccC-CCCCcccceEEEEcchHhcCCCEEEEEE
Confidence            35789999999999999887664  99999999975    36899999998 99999999999998752 2356899999


Q ss_pred             EeccCCCCCCceeeeEEEeCccc
Q 021710           92 FHSKLSETPKPLVGSVKFPLAHL  114 (308)
Q Consensus        92 ~d~~~~~~~d~lLG~~~ipL~~L  114 (308)
                      ||++ ...++++||++.|+|.++
T Consensus       112 ~d~d-~~~~~~~iG~~~i~l~~~  133 (166)
T 2cm5_A          112 WDYD-IGKSNDYIGGCQLGISAK  133 (166)
T ss_dssp             EECC-SSSCCEEEEEEEEETTCC
T ss_pred             EECC-CCCCCcEEEeEEEecccC
Confidence            9998 456889999999999985

>1w15_A Synaptotagmin IV; metal binding protein, endocytosis/exocytosis neurotransmitter release, transmembrane; 1.93A {Rattus norvegicus} SCOP: b.7.1.2 PDB: 1w16_A

Probab=99.71  E-value=7.5e-17  Score=134.47  Aligned_cols=93  Identities=18%  Similarity=0.308  Sum_probs=74.9

Q ss_pred             cccEEEEEEEEeecCCCCCCCCCCCCCcEEEEEEcC--C--ceEEEEeecCCCCCCccccEEEEeeeCC-CCCceEEEEE
Q 021710           17 ITHDLEITIICAKHLKNVNWRNGGDLKPYVVFYVDP--A--YRLATQSDDSGSTRPVWNERFTLPITHS-VRESVLTLEI   91 (308)
Q Consensus        17 ~~~~L~VtIisAk~L~~~~~~~~~~~dPYv~v~l~~--~--~k~kT~v~k~gt~nP~WnE~f~f~l~~~-~~~~~L~l~V   91 (308)
                      ..+.|+|+|++|++|...+..+.  +||||++++.+  .  .+++|+++++ +.||+|||+|.|.+... +....|.|+|
T Consensus        28 ~~~~L~v~v~~a~~L~~~d~~g~--~dpyv~v~~~~~~~~~~~~kT~v~~~-t~nP~wne~f~f~v~~~~l~~~~l~v~V  104 (153)
T 1w15_A           28 TTNTLTVVVLKARHLPKSDVSGL--SDPYVKVNLYHAKKRISKKKTHVKKC-TPNAVFNELFVFDIPCESLEEISVEFLV  104 (153)
T ss_dssp             TTTEEEEEEEEEESCC------C--CCEEEEEEEEETTEEEEEEECCCCCS-CSSEEEEEEEEEECCSSSSTTEEEEEEE
T ss_pred             CCCEEEEEEEEeECCCCcCCCCC--CCeEEEEEEEeCCeEeceEecCcccC-CCCCeecceEEEECCHHHhCceEEEEEE
Confidence            35799999999999999887764  99999999943  2  2779999998 99999999999998763 3357899999


Q ss_pred             EeccCCCCCCceeeeEEEeCcc
Q 021710           92 FHSKLSETPKPLVGSVKFPLAH  113 (308)
Q Consensus        92 ~d~~~~~~~d~lLG~~~ipL~~  113 (308)
                      ||++ ...++++||++.|+|.+
T Consensus       105 ~d~d-~~~~~~~lG~~~i~l~~  125 (153)
T 1w15_A          105 LDSE-RGSRNEVIGRLVLGATA  125 (153)
T ss_dssp             EECC-TTSCCEEEEEEEESTTC
T ss_pred             EeCC-CCCCCcEEEEEEECCCC
Confidence            9998 46689999999999988

>2cjs_A UNC-13 homolog A, MUNC13-1; neurotransmitter transport, zinc finger, synapto phorbol-ester binding; 1.78A {Rattus norvegicus} SCOP: b.7.1.1

Probab=99.69  E-value=2.4e-16  Score=134.34  Aligned_cols=122  Identities=16%  Similarity=0.230  Sum_probs=90.7

Q ss_pred             ccEEEEEEEEeecCCCCCCCCCCCCCcEEEEEEcCCceEEEEeecCCCCCCccccEEEEeeeCCCCCceEEEEEEeccCC
Q 021710           18 THDLEITIICAKHLKNVNWRNGGDLKPYVVFYVDPAYRLATQSDDSGSTRPVWNERFTLPITHSVRESVLTLEIFHSKLS   97 (308)
Q Consensus        18 ~~~L~VtIisAk~L~~~~~~~~~~~dPYv~v~l~~~~k~kT~v~k~gt~nP~WnE~f~f~l~~~~~~~~L~l~V~d~~~~   97 (308)
                      ...|.|+|++|++|..   .+  .+||||+++ .  ...+|+++++++.||+|||+|.|.+..  ....|.|+|||++  
T Consensus        13 ~~~L~V~V~~A~~l~~---~g--~~DPYV~v~-~--~~~kt~~~~~~t~nP~WnE~f~f~v~~--~~~~L~~~V~D~d--   80 (167)
T 2cjs_A           13 LSLLCVGVKKAKFDGA---QE--KFNTYVTLK-V--QNVESTTIAVRGSQPSWEQDFMFEINR--LDLGLTVEVWNKG--   80 (167)
T ss_dssp             CCEEEEEEEEEECSSC---GG--GCEEEEEEE-E--TTEEEECCCEESSSCEEEEEEEEECCC--TTSEEEEEEEECC--
T ss_pred             eEEEEEEEEEEECCCC---CC--CCCeEEEEE-e--cceEEEEecCCCCCCCCCCEEEEEeeC--CCCEEEEEEEECC--
Confidence            4799999999998842   33  499999999 2  346677776448999999999999986  3567999999998  


Q ss_pred             CCCCceeeeEEEeCcccccCCCCC-CCceeEEEEEeCCCCCCcc-------EEEEEEEEccC
Q 021710           98 ETPKPLVGSVKFPLAHLVDSDSSE-PTQYVRKLEVLRPSGRPQG-------KIRVKLVLNGR  151 (308)
Q Consensus        98 ~~~d~lLG~~~ipL~~L~~~~~~~-~~~~~~~~~L~~~sg~~~G-------~L~v~v~~~~~  151 (308)
                      ...|++||++.|+|++|....... ......|+.+..++++.+|       .|.+.++|...
T Consensus        81 ~~~dd~iG~~~i~L~~l~~~~~~g~~~~~~~~~~~~~~~g~~~g~~~p~~~~lll~~~~e~~  142 (167)
T 2cjs_A           81 LIWDTMVGTVWIPLRTIRQSNEEGPGEWLTLDSQAIMADSEICGTKDPTFHRILLDAHFELP  142 (167)
T ss_dssp             SSCCEEEEEEEEEGGGSCBCSSCCCCEEEEEEEEEEEETTEEEEEEEEEEEEEEEEEEEECC
T ss_pred             CCCCceEEEEEEEHHHhcccCcCCcccceeeeeeeEcCCCCCCceEccccceEEEEEEeecC
Confidence            458999999999999987644221 0123456776656666544       47777777543

>3l9b_A Otoferlin; C2-domain, beta-sheets, cell membrane, synaptic V hearing, membrane, synapse, transmembrane, membrane protein; 1.95A {Rattus norvegicus}

Probab=99.66  E-value=5.2e-16  Score=128.02  Aligned_cols=120  Identities=13%  Similarity=0.220  Sum_probs=101.5

Q ss_pred             ccEEEEEEEEeecCCCCCCCCCCCCCcEEEEEEcCCceEEEEeecCCCCCCccccEEEEeeeCC-CCCceEEEEEEeccC
Q 021710           18 THDLEITIICAKHLKNVNWRNGGDLKPYVVFYVDPAYRLATQSDDSGSTRPVWNERFTLPITHS-VRESVLTLEIFHSKL   96 (308)
Q Consensus        18 ~~~L~VtIisAk~L~~~~~~~~~~~dPYv~v~l~~~~k~kT~v~k~gt~nP~WnE~f~f~l~~~-~~~~~L~l~V~d~~~   96 (308)
                      ..-|+|+|.+|.+|+.       ..||++++.+.. .+++||++++++.||+|||.|.|++... ..+..|.|.|+|++ 
T Consensus        20 ~msL~V~l~~a~~Lpg-------~~Dp~akv~FRg-~k~kTkvi~~~~~npvfnE~F~wpl~~~ld~~e~L~v~V~d~~-   90 (144)
T 3l9b_A           20 HMALIVHLKTVSELRG-------RADRIAKVTFRG-QSFYSRVLENCEDVADFDETFRWPVASSIDRNEVLEIQIFNYS-   90 (144)
T ss_dssp             CEEEEEEEEEEESCCS-------CEEEEEEEEETT-EEEECCCEEEECSCEEEEEEEEEEESSCCCTTCEEEEEEEEEC-
T ss_pred             cEEEEEEEEEecCCCC-------CCCCeEEEEEec-cceeeEEeccCCCCceEcceEEecCCCCCCCCCEEEEEEEECc-
Confidence            3679999999999983       399999999975 8999999984489999999999998765 35778999999998 


Q ss_pred             CCCCCceeeeEEEeCcccccCCCCCCCceeEEEEEeCCCCCC-ccEEEEEEEEccC
Q 021710           97 SETPKPLVGSVKFPLAHLVDSDSSEPTQYVRKLEVLRPSGRP-QGKIRVKLVLNGR  151 (308)
Q Consensus        97 ~~~~d~lLG~~~ipL~~L~~~~~~~~~~~~~~~~L~~~sg~~-~G~L~v~v~~~~~  151 (308)
                      +.+++++||++.|+|++|....     ....+..|.+.+.++ .++|.+.|+|.+.
T Consensus        91 ~v~~nrlIG~~~i~Lq~lv~~~-----~l~l~~~LvD~n~~~~~a~I~l~l~Y~pp  141 (144)
T 3l9b_A           91 KVFSNKLIGTFRMVLQKVVEEN-----RVEVSDTLIDDNNAIIKTSLSMEVRYQAA  141 (144)
T ss_dssp             TTSCCEEEEEEEEESHHHHHHS-----EEEEEEEEECTTSCEEEEEEEEEEEEEET
T ss_pred             cccCCCEEEEEEEEhHHhccCC-----eEEEeecccCCCCCccccEEEEEEEecCC
Confidence            5789999999999999998765     234678888888776 5789999888753

>1dqv_A Synaptotagmin III; beta sandwich, calcium ION, C2 domain, endocytosis/exocytosis complex; 3.20A {Rattus rattus} SCOP: b.7.1.2 b.7.1.2 PDB: 3hn8_A

Probab=99.66  E-value=7.9e-16  Score=141.94  Aligned_cols=126  Identities=17%  Similarity=0.285  Sum_probs=99.1

Q ss_pred             cccEEEEEEEEeecCCCCCCCCCCCCCcEEEEEEc--CCceEEEEeecCCCCCCccccEEEEeeeCC-CCCceEEEEEEe
Q 021710           17 ITHDLEITIICAKHLKNVNWRNGGDLKPYVVFYVD--PAYRLATQSDDSGSTRPVWNERFTLPITHS-VRESVLTLEIFH   93 (308)
Q Consensus        17 ~~~~L~VtIisAk~L~~~~~~~~~~~dPYv~v~l~--~~~k~kT~v~k~gt~nP~WnE~f~f~l~~~-~~~~~L~l~V~d   93 (308)
                      ..+.|+|+|++|++|...+..+.  +||||++++.  ...+++|+++++ +.||+|||+|.|.+... +....|.|+|||
T Consensus        18 ~~~~L~v~v~~a~~L~~~d~~g~--~dPyv~v~l~~~~~~~~kT~v~~~-t~nP~wne~f~f~v~~~~l~~~~L~~~V~d   94 (296)
T 1dqv_A           18 GSDQLVVRILQALDLPAKDSNGF--SDPYVKIYLLPDRKKKFQTKVHRK-TLNPIFNETFQFSVPLAELAQRKLHFSVYD   94 (296)
T ss_dssp             SSCEEEEEEEEEECCCCCSTTSC--CCEEEEEECTTSTTSCEECCCCCS-CSSCEEEEEEEEECCGGGGSSCCCEEEEEE
T ss_pred             CCCEEEEEEEEeECCCCcCCCCC--cCeEEEEEEEcCCCeeEeCCccCC-CCCCcEeeEEEEEecHHHhcCCEEEEEEEE
Confidence            35899999999999999887764  9999999994  347899999998 89999999999998642 234689999999


Q ss_pred             ccCCCCCCceeeeEEEe-CcccccCCCCCCCceeEEEEEeCCCC--CCccEEEEEEEEcc
Q 021710           94 SKLSETPKPLVGSVKFP-LAHLVDSDSSEPTQYVRKLEVLRPSG--RPQGKIRVKLVLNG  150 (308)
Q Consensus        94 ~~~~~~~d~lLG~~~ip-L~~L~~~~~~~~~~~~~~~~L~~~sg--~~~G~L~v~v~~~~  150 (308)
                      ++ ...++++||++.|+ |.++.....    ....|+.|....+  ...|+|.+++.+..
T Consensus        95 ~d-~~~~~~~iG~~~i~~l~~~~~~~~----~~~~w~~L~~~~~~~~~~G~i~vsl~y~~  149 (296)
T 1dqv_A           95 FD-RFSRHDLIGQVVLDNLLELAEQPP----DRPLWRDILEGGSEKADLGELNFSLCYLP  149 (296)
T ss_dssp             CC-SSSCCCEEEEEECCCTTGGGSSCS----SCCCCEECBCCSSCCSCCCEEEEEEEEET
T ss_pred             cC-CCCCCceEEEEEeccccccccCCc----cceeeeccccccccccccceEEEEEEecc
Confidence            98 46789999999995 555543221    2347999875432  34799999888764

>3jzy_A Intersectin 2; C2 domain, structural genomics consortium (SGC), endocytosis; 1.56A {Homo sapiens} PDB: 3qbv_B* 1ki1_B

Probab=99.64  E-value=7.3e-16  Score=151.79  Aligned_cols=123  Identities=22%  Similarity=0.356  Sum_probs=101.3

Q ss_pred             cccEEEEEEEEeecCCCCCCCCCCCCCcEEEEEEcCCceEEEEeecCCCCCCccccEEEEeeeCCCCCceEEEEEEeccC
Q 021710           17 ITHDLEITIICAKHLKNVNWRNGGDLKPYVVFYVDPAYRLATQSDDSGSTRPVWNERFTLPITHSVRESVLTLEIFHSKL   96 (308)
Q Consensus        17 ~~~~L~VtIisAk~L~~~~~~~~~~~dPYv~v~l~~~~k~kT~v~k~gt~nP~WnE~f~f~l~~~~~~~~L~l~V~d~~~   96 (308)
                      ..+.|+|+|++|++|+..+..+.  +||||+++++. .+.+|+++++ +.||+|||+|.|.+... ....|.|+|||++ 
T Consensus       385 ~~~~l~v~v~~a~~L~~~d~~~~--sdpyv~v~~~~-~~~~T~~~~~-t~nP~w~e~f~f~~~~~-~~~~l~~~v~d~d-  458 (510)
T 3jzy_A          385 GIGRLMVHVIEATELKACKPNGK--SNPYCEISMGS-QSYTTRTIQD-TLNPKWNFNCQFFIKDL-YQDVLCLTLFDRD-  458 (510)
T ss_dssp             -CEEEEEEEEEEESCCCCSTTSC--CCEEEEEEETT-EEEECCCCSS-CSSCEEEEEEEEEESCT-TTCEEEEEEEECC-
T ss_pred             CCceEEEEeceeecCCCCCCCCC--CCeEEEEEECC-eeccCCccCC-CCCCccCceEEEEecCC-CCCEEEEEEEeCC-
Confidence            35789999999999999887765  99999999976 7899999998 89999999999998754 4578999999998 


Q ss_pred             CCCCCceeeeEEEeCcccccCCCCCCCceeEEEEEeCCCCCCccEEEEEEEEc
Q 021710           97 SETPKPLVGSVKFPLAHLVDSDSSEPTQYVRKLEVLRPSGRPQGKIRVKLVLN  149 (308)
Q Consensus        97 ~~~~d~lLG~~~ipL~~L~~~~~~~~~~~~~~~~L~~~sg~~~G~L~v~v~~~  149 (308)
                      ...+|++||++.++|.+|..+..... ....|+.|.   +...|+|.|++.+.
T Consensus       459 ~~~~~d~lG~~~~~l~~l~~~~~~~~-~~~~~~~l~---~~~~G~i~l~~~l~  507 (510)
T 3jzy_A          459 QFSPDDFLGRTEIPVAKIRTEQESKG-PMTRRLLLH---EVPTGEVWVRFDLQ  507 (510)
T ss_dssp             SSSSCCEEEEEEEEHHHHHHHHHHHC-SCCEEEECB---SSSSCEEEEEEEEE
T ss_pred             CCCCCCceEEEEEEHHHhccccCCCC-ceeeeecCC---CCCCceEEEEEEEE
Confidence            46689999999999999976432100 235789885   45689999998875

>3nsj_A Perforin-1; pore forming protein, immune system; HET: NAG; 2.75A {Mus musculus}

Probab=99.64  E-value=1.9e-15  Score=150.42  Aligned_cols=114  Identities=13%  Similarity=0.217  Sum_probs=95.6

Q ss_pred             ccEEEEEEEEeecCCCCCCCCCCCCCcEEEEEEcCCceEEEEeecCCCCCCccccEEEEeeeCCCCCceEEEEEEeccCC
Q 021710           18 THDLEITIICAKHLKNVNWRNGGDLKPYVVFYVDPAYRLATQSDDSGSTRPVWNERFTLPITHSVRESVLTLEIFHSKLS   97 (308)
Q Consensus        18 ~~~L~VtIisAk~L~~~~~~~~~~~dPYv~v~l~~~~k~kT~v~k~gt~nP~WnE~f~f~l~~~~~~~~L~l~V~d~~~~   97 (308)
                      .+.|+|+|++|++|+. ++++.  +||||+|++.. .+.+|+++++ ++||+|||+|.|.+........|+|+|||+|. 
T Consensus       393 ~~~L~V~V~~A~~L~~-D~~g~--sDPYV~v~l~~-~~~kTkvik~-tlNP~Wne~f~f~~~~~~~~~~L~~~V~D~D~-  466 (540)
T 3nsj_A          393 LAHLVVSNFRAEHLWG-DYTTA--TDAYLKVFFGG-QEFRTGVVWN-NNNPRWTDKMDFENVLLSTGGPLRVQVWDADY-  466 (540)
T ss_dssp             EEEEEEEEEEEESCCC-SSCSC--CCEEEEEEETT-EEEECCCBCS-CSSCBCCCCEEEEEEETTTCCCEEEEEEECCS-
T ss_pred             ccEEEEEEEEccCCCc-ccCCC--cCeEEEEEECC-EeeeeeeecC-CCCCCCCeEEEEEEecCCCCCEEEEEEEECCC-
Confidence            4789999999999998 87775  99999999986 6799999999 89999999999986532246789999999994 


Q ss_pred             CCCCceeeeEEEeCcccccCCCCCCCceeEEEEEeCCCCCCccEEEEEEEEccCC
Q 021710           98 ETPKPLVGSVKFPLAHLVDSDSSEPTQYVRKLEVLRPSGRPQGKIRVKLVLNGRP  152 (308)
Q Consensus        98 ~~~d~lLG~~~ipL~~L~~~~~~~~~~~~~~~~L~~~sg~~~G~L~v~v~~~~~~  152 (308)
                      ...|+|||++.++|..   +      ....|+.|.      .|.|++++.++..+
T Consensus       467 ~~~dD~LG~~~~~L~~---g------~~~~~~~l~------~G~l~~~~~~~c~p  506 (540)
T 3nsj_A          467 GWDDDLLGSCDRSPHS---G------FHEVTCELN------HGRVKFSYHAKCLP  506 (540)
T ss_dssp             SSCCEEEEEEEECCCS---E------EEEEEEECS------SSEEEEEEEEEECT
T ss_pred             CCCCCEEEEEEEEeeC---C------cEEEEEEcC------CeEEEEEEEEEECC
Confidence            5688999999999872   1      335788762      69999999998864

>1djx_A PLC-D1, phosphoinositide-specific phospholipase C, isozyme delta1; phosphoric diester hydrolase, hydrolase, lipid degradation, transducer; HET: I3P; 2.30A {Rattus norvegicus} SCOP: a.39.1.7 b.7.1.1 c.1.18.1 PDB: 1djg_A 1dji_A 1djh_A* 1djw_A* 1djy_A* 1djz_A* 2isd_A 1qas_A 1qat_A

Probab=99.63  E-value=2.7e-15  Score=151.97  Aligned_cols=122  Identities=18%  Similarity=0.316  Sum_probs=102.2

Q ss_pred             cccEEEEEEEEeecCCCCCC--CCCCCCCcEEEEEEcC----CceEEEEeecCCCCCCccccEEEEeeeCCCCCceEEEE
Q 021710           17 ITHDLEITIICAKHLKNVNW--RNGGDLKPYVVFYVDP----AYRLATQSDDSGSTRPVWNERFTLPITHSVRESVLTLE   90 (308)
Q Consensus        17 ~~~~L~VtIisAk~L~~~~~--~~~~~~dPYv~v~l~~----~~k~kT~v~k~gt~nP~WnE~f~f~l~~~~~~~~L~l~   90 (308)
                      ....|+|+|++|++|+..+.  .+  ..||||+|.+.+    ..+.||+++++++.||+|||+|.|.+... +...|.|+
T Consensus       495 ~~~~L~V~Vi~A~~L~~~d~~~~~--~~DPYV~V~l~g~~~d~~~~kTkvi~~ng~NP~WnE~f~F~v~~~-el~~L~~~  571 (624)
T 1djx_A          495 RPERLRVRIISGQQLPKVNKNKNS--IVDPKVIVEIHGVGRDTGSRQTAVITNNGFNPRWDMEFEFEVTVP-DLALVRFM  571 (624)
T ss_dssp             CCEEEEEEEEEEESCCCCSSCSSS--CCCEEEEEEEESSGGGCEEEECCCCTTCSSSCEEEEEEEEEESCG-GGCEEEEE
T ss_pred             cceEEEEEEEEcCCCCcccccccC--CCCcEEEEEEecCCCCcceeecccccCCCCCCccCceEEEEEecC-CCCEEEEE
Confidence            46899999999999998774  33  599999999954    26889999998459999999999998753 34689999


Q ss_pred             EEeccCCCCCCceeeeEEEeCcccccCCCCCCCceeEEEEEeCCCCCC--ccEEEEEEEEcc
Q 021710           91 IFHSKLSETPKPLVGSVKFPLAHLVDSDSSEPTQYVRKLEVLRPSGRP--QGKIRVKLVLNG  150 (308)
Q Consensus        91 V~d~~~~~~~d~lLG~~~ipL~~L~~~~~~~~~~~~~~~~L~~~sg~~--~G~L~v~v~~~~  150 (308)
                      |||++ ...++++||++.|+|.+|..+        .+|++|++..|++  .++|.|+|.+.+
T Consensus       572 V~D~D-~~~~dd~iG~~~ipl~~L~~G--------~r~v~L~d~~g~~~~~~~L~v~i~~~~  624 (624)
T 1djx_A          572 VEDYD-SSSKNDFIGQSTIPWNSLKQG--------YRHVHLLSKNGDQHPSATLFVKISIQD  624 (624)
T ss_dssp             EEECC-SSSCCEEEEEEEEEGGGBCCE--------EEEEEEECTTSCEEEEEEEEEEEEEEC
T ss_pred             EEEcC-CCCCCceeEEEEEEHHHcCCC--------cEEEeCCCCCcCCCCceEEEEEEEEEC
Confidence            99998 456899999999999998652        4799999888875  689999998863

>2r83_A Synaptotagmin-1; C2A-C2B, exocytosis, calcium, cell junction, cytoplasmic vesicle, glycoprotein, lipoprotein, membrane, metal-binding palmitate; 2.70A {Homo sapiens} SCOP: b.7.1.2

Probab=99.55  E-value=3e-14  Score=129.95  Aligned_cols=109  Identities=15%  Similarity=0.210  Sum_probs=87.6

Q ss_pred             ccEEEEEEEEeecCCCCCCCCCCCCCcEEEEEEcCC----ceEEEEeecCCCCCCccccEEEEeeeCC-CCCceEEEEEE
Q 021710           18 THDLEITIICAKHLKNVNWRNGGDLKPYVVFYVDPA----YRLATQSDDSGSTRPVWNERFTLPITHS-VRESVLTLEIF   92 (308)
Q Consensus        18 ~~~L~VtIisAk~L~~~~~~~~~~~dPYv~v~l~~~----~k~kT~v~k~gt~nP~WnE~f~f~l~~~-~~~~~L~l~V~   92 (308)
                      .+.|+|+|++|++|...+..+.  +||||++++...    .+.+|+++++ +.||+|||+|.|.+... +....|.|+||
T Consensus       149 ~~~l~v~v~~a~~L~~~d~~~~--~dpyv~v~~~~~~~~~~~~kT~v~~~-t~nP~wne~f~f~v~~~~l~~~~l~i~V~  225 (284)
T 2r83_A          149 AGKLTVVILEAKNLKKMDVGGL--SDPYVKIHLMQNGKRLKKKKTTIKKN-TLNPYYNESFSFEVPFEQIQKVQVVVTVL  225 (284)
T ss_dssp             TTEEEEEEEEEESCCCCSTTSC--CCEEEEEEEEETTEEEEEEECCCCCS-CSSCEEEEEEEEECCTTTGGGEEEEEEEE
T ss_pred             CCceEEEEEEeECCCCcCCCCC--cCeEEEEEEEeCCcEeeeeccceecC-CCCCEEceeEEEeCCHHHhCceEEEEEEE
Confidence            4789999999999999887764  999999998531    4789999998 99999999999998753 23567999999


Q ss_pred             eccCCCCCCceeeeEEEeCcccc----------cCCCCCCCceeEEEEEeC
Q 021710           93 HSKLSETPKPLVGSVKFPLAHLV----------DSDSSEPTQYVRKLEVLR  133 (308)
Q Consensus        93 d~~~~~~~d~lLG~~~ipL~~L~----------~~~~~~~~~~~~~~~L~~  133 (308)
                      |++ ..+++++||++.|+|..+.          .....   ....|+.|..
T Consensus       226 d~d-~~~~~~~iG~~~i~l~~~~~~~~~w~~~~~~~~~---~~~~W~~L~~  272 (284)
T 2r83_A          226 DYD-KIGKNDAIGKVFVGYNSTGAELRHWSDMLANPRR---PIAQWHTLQV  272 (284)
T ss_dssp             ECC-SSSCCCEEEEEEEETTCCHHHHHHHHHHHHSTTS---CEEEEEECBC
T ss_pred             eCC-CCCCCcEEEEEEECCCCCCcHHHHHHHHHHCCCC---chheeeecCC
Confidence            998 4678999999999997632          11111   3468999964

>3bxj_A RAS GTPase-activating protein syngap; GTPase activation, membrane, phosphoprotein, SH3-binding, signaling protein; 3.00A {Rattus norvegicus}

Probab=99.50  E-value=1.4e-15  Score=149.87  Aligned_cols=121  Identities=21%  Similarity=0.279  Sum_probs=20.7

Q ss_pred             ccEEEEEEEEeecCCCCCCCCCCCCCcEEEEEEcCCceEEEEeecCCC---CCCccccEEEEeeeCCCCCceEEEEEEec
Q 021710           18 THDLEITIICAKHLKNVNWRNGGDLKPYVVFYVDPAYRLATQSDDSGS---TRPVWNERFTLPITHSVRESVLTLEIFHS   94 (308)
Q Consensus        18 ~~~L~VtIisAk~L~~~~~~~~~~~dPYv~v~l~~~~k~kT~v~k~gt---~nP~WnE~f~f~l~~~~~~~~L~l~V~d~   94 (308)
                      .+.|+|+|++|++|+..+       ||||+++++...+.||+++++ +   .||+|||+|.|.+...  ...|.|+|||+
T Consensus        10 ~~~L~V~VieAk~L~~~d-------dpYv~v~l~~~~~~kT~v~~k-t~~glnP~WnE~F~f~~~~~--~~~L~v~V~d~   79 (483)
T 3bxj_A           10 DNVLKLWIIEARELPPKK-------RYYCELCLDDMLYARTTSKPR-SASGDTVFWGEHFEFNNLPA--VRALRLHLYRD   79 (483)
T ss_dssp             EECC-----------------------------------------------------CCEECC-----------------
T ss_pred             ccEEEEEEEEcCCcCCCC-------CCeEEEEECCeEEeeeeEEeC-CCCCCCCccccEEEEecCCC--ccEEEEEEEec
Confidence            467999999999997642       899999998766789999998 7   9999999999997543  47899999994


Q ss_pred             -cC--CCCCCceeeeEEEeCcccccCCCCCCCceeEEEEEeCCCC------------------------CCccEEEEEEE
Q 021710           95 -KL--SETPKPLVGSVKFPLAHLVDSDSSEPTQYVRKLEVLRPSG------------------------RPQGKIRVKLV  147 (308)
Q Consensus        95 -~~--~~~~d~lLG~~~ipL~~L~~~~~~~~~~~~~~~~L~~~sg------------------------~~~G~L~v~v~  147 (308)
                       +.  ...+|++||++.|+|.+|..+.     ....||+|..+..                        +..|+|+|+++
T Consensus        80 ~d~~~~~~~d~~lG~v~i~l~~l~~~~-----~~~~W~~L~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~G~lrL~v~  154 (483)
T 3bxj_A           80 SDKKRKKDKAGYVGLVTVPVATLAGRH-----FTEQWYPVTLPTGSGGSGGMGSGGGGGSGGGSGGKGKGGCPAVRLKAR  154 (483)
T ss_dssp             --------------------------------CCEECC--------------------------------------CEEE
T ss_pred             CCccccCCCCceEEEEEEEHHHhcCCC-----CCCeEEECCCCCCccccccccccccccccccccccCCCCCceEEEEEE
Confidence             31  2457899999999999997643     2368999965432                        23699999999


Q ss_pred             EccCCC
Q 021710          148 LNGRPL  153 (308)
Q Consensus       148 ~~~~~~  153 (308)
                      |.+...
T Consensus       155 ~~~~~v  160 (483)
T 3bxj_A          155 YQTMSI  160 (483)
T ss_dssp             EEECCB
T ss_pred             eeeeee
Confidence            987643

>1cjy_A CPLA2, protein (cytosolic phospholipase A2); lipid-binding, hydrolase; HET: MES; 2.50A {Homo sapiens} SCOP: b.7.1.1 c.19.1.2 PDB: 1bci_A

Probab=99.50  E-value=5.8e-14  Score=144.13  Aligned_cols=107  Identities=17%  Similarity=0.373  Sum_probs=90.4

Q ss_pred             CCcccEEEEEEEEeecCCC---CCCCCCCCCCcEEEEEEcC--CceEEEEeecCCCCCCccccEEEEeeeCCCCCceEEE
Q 021710           15 SPITHDLEITIICAKHLKN---VNWRNGGDLKPYVVFYVDP--AYRLATQSDDSGSTRPVWNERFTLPITHSVRESVLTL   89 (308)
Q Consensus        15 ~~~~~~L~VtIisAk~L~~---~~~~~~~~~dPYv~v~l~~--~~k~kT~v~k~gt~nP~WnE~f~f~l~~~~~~~~L~l   89 (308)
                      ..+.+.|+|+|++|++|+.   .+..+.  +||||+|++.+  ..++||+++++ +.||+|||+|.|.+... ....|+|
T Consensus        14 ~~~~g~L~V~Vi~A~nL~~~~~~D~~g~--sDPYV~V~l~~~~~~k~kTkvik~-tlNPvWNEtF~F~v~~~-~~~~L~~   89 (749)
T 1cjy_A           14 HQYSHKFTVVVLRATKVTKGAFGDMLDT--PDPYVELFISTTPDSRKRTRHFNN-DINPVWNETFEFILDPN-QENVLEI   89 (749)
T ss_dssp             CCCCEEEEEEEEEEECCCSCHHHHHHCC--CCEEEEEECTTSTTCCEECCCCTT-CSSCEEEEEEEEEECTT-SCCBCEE
T ss_pred             CCCccEEEEEEEEEECCCCccccCCCCC--cCeEEEEEEecCCCCeEecceEcC-CCCCeeeeEEEEEecCC-CCCEEEE
Confidence            3456899999999999998   666654  99999999985  36899999998 89999999999999864 4568999


Q ss_pred             EEEeccCCCCCCceeeeEEEeCcccccCCCCCCCceeEEEEEe
Q 021710           90 EIFHSKLSETPKPLVGSVKFPLAHLVDSDSSEPTQYVRKLEVL  132 (308)
Q Consensus        90 ~V~d~~~~~~~d~lLG~~~ipL~~L~~~~~~~~~~~~~~~~L~  132 (308)
                      +|||++. .. |++||++.|+|.+|..+.     ....|++|.
T Consensus        90 ~V~D~D~-~~-ddfIG~v~I~L~~L~~g~-----~~~~w~~L~  125 (749)
T 1cjy_A           90 TLMDANY-VM-DETLGTATFTVSSMKVGE-----KKEVPFIFN  125 (749)
T ss_dssp             EEEECCS-SS-CEEEEEECCBSTTSCTTC-----CCCEEEEET
T ss_pred             EEEECCC-CC-CceeEEEEEEHHHcCCCC-----ceEEEEecC
Confidence            9999984 55 999999999999996543     235899994

>3qr0_A Phospholipase C-beta (PLC-beta); PH domain, EF hand, C2 domain, TIM barrel domain, hydrolase, calcium binding, phospholipid binding; 2.00A {Sepia officinalis} PDB: 3qr1_A

Probab=99.44  E-value=1e-12  Score=136.15  Aligned_cols=115  Identities=18%  Similarity=0.338  Sum_probs=95.4

Q ss_pred             cccEEEEEEEEeecCCCCCCCCCCCCCcEEEEEEcCC------ceEEEEeecCCCCCCccccE-EEEe-eeCCCCCceEE
Q 021710           17 ITHDLEITIICAKHLKNVNWRNGGDLKPYVVFYVDPA------YRLATQSDDSGSTRPVWNER-FTLP-ITHSVRESVLT   88 (308)
Q Consensus        17 ~~~~L~VtIisAk~L~~~~~~~~~~~dPYv~v~l~~~------~k~kT~v~k~gt~nP~WnE~-f~f~-l~~~~~~~~L~   88 (308)
                      ....|+|+|++|++|...      ..||||+|.+.+.      .+++|+++++++.||+|||+ |.|. +..+ +...|.
T Consensus       648 ~~~~L~V~Visaq~L~~~------~~DPYV~V~l~g~p~d~~~~k~kTkvv~~nglNPvWNE~~F~F~~v~~p-ela~Lr  720 (816)
T 3qr0_A          648 VAGTIEIKIISAQFLSDK------QISSYVEVEMYGLPTDTVRKKFKTKIIENNGMDPYYDEKVFVFKKVVLP-DLAVVR  720 (816)
T ss_dssp             CCEEEEEEEEEEECCCSS------CCCEEEEEEEESSGGGCEEEEEECCCBCSCSSCCBCCCCCEEEEEESCG-GGCEEE
T ss_pred             cceEEEEEEEEcccCCCC------CCCCeEEEEEeCCCcccccceeeeEEecCCCCCCeEcCceeEEccccCC-CccEEE
Confidence            347899999999999742      3899999999641      47899999986799999998 9998 6543 346899


Q ss_pred             EEEEeccCCCCCCceeeeEEEeCcccccCCCCCCCceeEEEEEeCCCCCC--ccEEEEEEEEccC
Q 021710           89 LEIFHSKLSETPKPLVGSVKFPLAHLVDSDSSEPTQYVRKLEVLRPSGRP--QGKIRVKLVLNGR  151 (308)
Q Consensus        89 l~V~d~~~~~~~d~lLG~~~ipL~~L~~~~~~~~~~~~~~~~L~~~sg~~--~G~L~v~v~~~~~  151 (308)
                      |+|||++     ++|||++.|+|+.|..+        .++++|++..|+.  .++|.|.|.+.+-
T Consensus       721 f~V~D~d-----ddfiG~~~ipL~~L~~G--------yR~vpL~~~~g~~~~~atLfv~i~~~~~  772 (816)
T 3qr0_A          721 IIVSEEN-----GKFIGHRVMPLDGIKPG--------YRHVPLRNESNRPLGLASVFAHIVAKDY  772 (816)
T ss_dssp             EEEEETT-----SCEEEEEEEESTTCCCE--------EEEEEEECTTSCEEEEEEEEEEEEEEEC
T ss_pred             EEEEecC-----CCeeeEEEEEHHHcCCc--------ceEEEEeCCCCCCCCceEEEEEEEEEec
Confidence            9999975     67999999999998753        4789999988886  4799999999863

>3ohm_B 1-phosphatidylinositol-4,5-bisphosphate phosphodi beta-3; PH domain, EF hand, TIM barrel, C2 domain, GTPase, lipase, C binding, GTP binding; HET: GDP; 2.70A {Homo sapiens}

Probab=99.43  E-value=7.5e-13  Score=137.94  Aligned_cols=115  Identities=17%  Similarity=0.321  Sum_probs=94.8

Q ss_pred             cccEEEEEEEEeecCCCCCCCCCCCCCcEEEEEEcC-----CceEEEEeecCCCCCCcccc-EEEEe-eeCCCCCceEEE
Q 021710           17 ITHDLEITIICAKHLKNVNWRNGGDLKPYVVFYVDP-----AYRLATQSDDSGSTRPVWNE-RFTLP-ITHSVRESVLTL   89 (308)
Q Consensus        17 ~~~~L~VtIisAk~L~~~~~~~~~~~dPYv~v~l~~-----~~k~kT~v~k~gt~nP~WnE-~f~f~-l~~~~~~~~L~l   89 (308)
                      ....|+|+|++|++|...      ..||||+|.+.+     ..+++|+++++++.||+||| +|.|. |... +...|.|
T Consensus       723 ~~~~L~V~Visaq~L~~~------~~DPYV~V~l~g~p~D~~~k~kTkvi~~NglNPvWnEe~F~F~~V~~p-ela~Lrf  795 (885)
T 3ohm_B          723 VANALRVKVISGQFLSDR------KVGIYVEVDMFGLPVDTRRKYRTRTSQGNSFNPVWDEEPFDFPKVVLP-TLASLRI  795 (885)
T ss_dssp             CCEEEEEEEEEEESCCSS------CCCEEEEEEEESSTTTCBCCCCCCCCSSCSSSCBCCCCCEEEEEESCG-GGCEEEE
T ss_pred             cceEEEEEEEEeccCccc------CCCcEEEEEEeCCCcccccceeeEEeeCCCcCCeeccceeEEeeEEcC-CcCEEEE
Confidence            346899999999999752      389999999964     13579999987679999999 69998 6432 3457999


Q ss_pred             EEEeccCCCCCCceeeeEEEeCcccccCCCCCCCceeEEEEEeCCCCCC--ccEEEEEEEEccC
Q 021710           90 EIFHSKLSETPKPLVGSVKFPLAHLVDSDSSEPTQYVRKLEVLRPSGRP--QGKIRVKLVLNGR  151 (308)
Q Consensus        90 ~V~d~~~~~~~d~lLG~~~ipL~~L~~~~~~~~~~~~~~~~L~~~sg~~--~G~L~v~v~~~~~  151 (308)
                      +|||++     ++|||++.|+|+.|..+        .++++|++..|..  .++|.|.|.+.+-
T Consensus       796 ~V~D~d-----ddfiG~~~lpL~~L~~G--------yR~vpL~~~~g~~l~~atLfv~i~~~~~  846 (885)
T 3ohm_B          796 AAFEEG-----GKFVGHRILPVSAIRSG--------YHYVCLRNEANQPLCLPALLIYTEASDY  846 (885)
T ss_dssp             EEEETT-----TEEEEEEEEETTTCCCE--------EEEEEEECTTSCEEEEEEEEEEEEEEEC
T ss_pred             EEEcCC-----ccEEeeEEEEHHHcCCC--------ceEEEecCCCCCccCceEEEEEEEEEec
Confidence            999976     68999999999998753        4789999988875  7899999999863

>1dqv_A Synaptotagmin III; beta sandwich, calcium ION, C2 domain, endocytosis/exocytosis complex; 3.20A {Rattus rattus} SCOP: b.7.1.2 b.7.1.2 PDB: 3hn8_A

Probab=99.40  E-value=1e-13  Score=127.70  Aligned_cols=94  Identities=18%  Similarity=0.228  Sum_probs=80.6

Q ss_pred             ccEEEEEEEEeecCCCCCCCCCCCCCcEEEEEEcC----CceEEEEeecCCCCCCccccEEEEeeeCC-CCCceEEEEEE
Q 021710           18 THDLEITIICAKHLKNVNWRNGGDLKPYVVFYVDP----AYRLATQSDDSGSTRPVWNERFTLPITHS-VRESVLTLEIF   92 (308)
Q Consensus        18 ~~~L~VtIisAk~L~~~~~~~~~~~dPYv~v~l~~----~~k~kT~v~k~gt~nP~WnE~f~f~l~~~-~~~~~L~l~V~   92 (308)
                      .+.|+|+|++|++|...+..+.  +||||++++..    ..+++|+++++ +.||+|||+|.|.+... +....|.|+||
T Consensus       151 ~~~l~v~v~~a~~L~~~d~~g~--~Dpyv~v~l~~~~~~~~~~kT~v~~~-t~nP~wne~f~f~v~~~~l~~~~L~i~V~  227 (296)
T 1dqv_A          151 AGLLTVTIIKASNLKAMDLTGF--SDPYVKASLISEGRRLKKRKTSIKKN-TLNPTYNEALVFDVAPESVENVGLSIAVV  227 (296)
T ss_dssp             TTEEEEEEEEEESCCCCSSSSC--CCEEEEECCCTTCCTTSCEECCCCCS-CSSCEEEECCCCCCCSGGGGSCCCCCEEE
T ss_pred             cceeEEEEEEeecCCccCCCCC--CCcEEEEEEEeCCcCccceecceecC-CCCCeECceEEEEcCHHHccCcEEEEEEE
Confidence            4789999999999999887764  89999999962    25789999998 99999999999998753 33568999999


Q ss_pred             eccCCCCCCceeeeEEEeCcccc
Q 021710           93 HSKLSETPKPLVGSVKFPLAHLV  115 (308)
Q Consensus        93 d~~~~~~~d~lLG~~~ipL~~L~  115 (308)
                      |++ ..+++++||++.|+|.++.
T Consensus       228 d~d-~~~~~~~iG~~~i~l~~~~  249 (296)
T 1dqv_A          228 DYD-CIGHNEVIGVCRVGPEAAD  249 (296)
T ss_dssp             ECC-SSSCCEEEEECCCSSCTTC
T ss_pred             eCC-CCCCCceEEEEEECCccCC
Confidence            998 4678999999999998764

>2zkm_X 1-phosphatidylinositol-4,5-bisphosphate phosphodiesterase beta-2; phospholipase C, phosphoinositide phospholipase, PLC-beta-2, calcium, coiled coil; 1.62A {Homo sapiens} SCOP: a.39.1.7 b.7.1.1 b.55.1.1 c.1.18.1 PDB: 2fju_B

Probab=99.40  E-value=2.2e-12  Score=133.78  Aligned_cols=113  Identities=22%  Similarity=0.361  Sum_probs=92.2

Q ss_pred             cccEEEEEEEEeecCCCCCCCCCCCCCcEEEEEEcC-----CceEEEE-eecCCCCCCcccc-EEEE-eeeCCCCCceEE
Q 021710           17 ITHDLEITIICAKHLKNVNWRNGGDLKPYVVFYVDP-----AYRLATQ-SDDSGSTRPVWNE-RFTL-PITHSVRESVLT   88 (308)
Q Consensus        17 ~~~~L~VtIisAk~L~~~~~~~~~~~dPYv~v~l~~-----~~k~kT~-v~k~gt~nP~WnE-~f~f-~l~~~~~~~~L~   88 (308)
                      ..+.|+|+|++|++|...      ..||||+|.+.+     ..++||+ ++++++.||+||| +|.| .|..+ +...|.
T Consensus       676 ~~~~L~V~Visa~~L~~~------~~DPYV~V~l~g~p~d~~~k~kTk~vv~~n~~NPvWnEe~f~F~~v~~~-el~~Lr  748 (799)
T 2zkm_X          676 VATTLSITVISGQFLSER------SVRTYVEVELFGLPGDPKRRYRTKLSPSTNSINPVWKEEPFVFEKILMP-ELASLR  748 (799)
T ss_dssp             TCEEEEEEEEEEESCCSS------CCCEEEEEEEECCTTSCCCCEECCCCSSSCCSSCBCCCCCEEEEEESSG-GGCEEE
T ss_pred             eeeeEEEEEEeccccCcc------CCCcEEEEEEEecCCCcccceeecccccCCCCCCeeecceEEEEEEccC-CccEEE
Confidence            357899999999999852      389999999953     1468999 8887679999999 6999 77543 345899


Q ss_pred             EEEEeccCCCCCCceeeeEEEeCcccccCCCCCCCceeEEEEEeCCCCCC--ccEEEEEEEEc
Q 021710           89 LEIFHSKLSETPKPLVGSVKFPLAHLVDSDSSEPTQYVRKLEVLRPSGRP--QGKIRVKLVLN  149 (308)
Q Consensus        89 l~V~d~~~~~~~d~lLG~~~ipL~~L~~~~~~~~~~~~~~~~L~~~sg~~--~G~L~v~v~~~  149 (308)
                      |+|||++     +++||++.|+|+.|..+        .+|++|++..|.+  .++|.|+|.++
T Consensus       749 ~~V~D~d-----~d~iG~~~ipl~~L~~G--------~r~v~L~~~~g~~~~~~~Lfv~i~~~  798 (799)
T 2zkm_X          749 VAVMEEG-----NKFLGHRIIPINALNSG--------YHHLCLHSESNMPLTMPALFIFLEMK  798 (799)
T ss_dssp             EEEEETT-----TEEEEEEEEEGGGBCCE--------EEEEEEECTTCCEEEEEEEEEEEEEE
T ss_pred             EEEEEeC-----CCccceEeeehhhcCCC--------cEEEeccCCCCCCCCceEEEEEEEEE
Confidence            9999985     68999999999998652        4789999887774  58888988875

>3pfq_A PKC-B, PKC-beta, protein kinase C beta type; phosphorylation, transferase; HET: TPO SEP ANP; 4.00A {Rattus norvegicus} PDB: 1tbn_A 1tbo_A 2e73_A

Probab=99.36  E-value=2.1e-12  Score=131.82  Aligned_cols=107  Identities=23%  Similarity=0.351  Sum_probs=91.5

Q ss_pred             ccEEEEEEEEeecCCCCCCCCCCCCCcEEEEEEcC----CceEEEEeecCCCCCCccccEEEEeeeCCCCCceEEEEEEe
Q 021710           18 THDLEITIICAKHLKNVNWRNGGDLKPYVVFYVDP----AYRLATQSDDSGSTRPVWNERFTLPITHSVRESVLTLEIFH   93 (308)
Q Consensus        18 ~~~L~VtIisAk~L~~~~~~~~~~~dPYv~v~l~~----~~k~kT~v~k~gt~nP~WnE~f~f~l~~~~~~~~L~l~V~d   93 (308)
                      ...|+|+|++|++|...+..+.  +||||++++.+    ..+.+|+++++ ++||+|||+|.|.+........|.|+|||
T Consensus       171 ~~~L~V~v~~a~~L~~~d~~g~--sDPyvkv~l~p~~~~~~k~kT~v~~~-tlnP~wne~f~f~~~~~~~~~~L~v~v~d  247 (674)
T 3pfq_A          171 REVLIVVVRDAKNLVPMDPNGL--SDPYVKLKLIPDPKSESKQKTKTIKS-SLNPEWNETFRFQLKESDKDRRLSVEIWD  247 (674)
T ss_dssp             SSEEEEEEEEEESCCCCSTTSS--CCEEEEEEEESCSSCCSCEECCCCSS-CSSCEEEEEEEEECCSTTTTCEEEEEEEE
T ss_pred             cceeeeeeecccccCCCCcccc--cCcccccccccCcccccccccccccc-ccCCCccceeeeecccCCccceeeeEEee
Confidence            3678999999999999988765  99999999943    36889999999 89999999999998865456679999999


Q ss_pred             ccCCCCCCceeeeEEEeCcccccCCCCCCCceeEEEEEeCC
Q 021710           94 SKLSETPKPLVGSVKFPLAHLVDSDSSEPTQYVRKLEVLRP  134 (308)
Q Consensus        94 ~~~~~~~d~lLG~~~ipL~~L~~~~~~~~~~~~~~~~L~~~  134 (308)
                      ++ ...+|++||++.|+|.++....      ...|+.|...
T Consensus       248 ~d-~~~~dd~iG~~~i~l~~l~~~~------~~~w~~Lls~  281 (674)
T 3pfq_A          248 WD-LTSRNDFMGSLSFGISELQKAG------VDGWFKLLSQ  281 (674)
T ss_dssp             CC-SSSCCEECCBCCCBTTHHHHCC------EEEEEECBCT
T ss_pred             cc-cccccccccccccchhhhccCC------cccceeeccc
Confidence            98 4679999999999999998642      3689999754

>2enj_A NPKC-theta, protein kinase C theta type; beta-sandwich, phosphotyrosine binding, TCR, T-cell, diacylglycerol, phorbol ester, structural genomics; NMR {Homo sapiens}

Probab=99.22  E-value=1.3e-10  Score=94.41  Aligned_cols=115  Identities=16%  Similarity=0.225  Sum_probs=88.1

Q ss_pred             ccEEEEEEEEeecCCCCCCCCCCCCCcEEEEEEcCCc---eEEE-EeecCCCCCCccccEEEEeeeCCCCCceEEEEEEe
Q 021710           18 THDLEITIICAKHLKNVNWRNGGDLKPYVVFYVDPAY---RLAT-QSDDSGSTRPVWNERFTLPITHSVRESVLTLEIFH   93 (308)
Q Consensus        18 ~~~L~VtIisAk~L~~~~~~~~~~~dPYv~v~l~~~~---k~kT-~v~k~gt~nP~WnE~f~f~l~~~~~~~~L~l~V~d   93 (308)
                      ...|+|.+.+..-......... ..||||.|.++...   +.+| .+.++ |..|+|||+|.-.|.+   ...|.|.|||
T Consensus         9 ~~flRi~l~~~~~~~~~~~~~~-~lDPY~aV~VdE~~~te~gqtl~~Kkk-T~~P~Wne~Fd~~V~~---Gr~l~i~Vfh   83 (138)
T 2enj_A            9 SPFLRIGLSNFDCGSCQSCQGE-AVNPYCAVLVKEYVESENGQMYIQKKP-TMYPPWDSTFDAHINK---GRVMQIIVKG   83 (138)
T ss_dssp             CCCEEEEEEEEECCCCCCSCCC-CCCCEEEEEEEEEEEETTEEEEEEEEE-EECCCSSSEEEECCCS---SCEEEEEEEC
T ss_pred             CcceEEEeeccccCCCCCcccc-cCCceEEEEeeeeeeccCceeecccCC-CCCccccceEeeeEEC---CeEEEEEEEc
Confidence            3568898877765443321122 49999999998632   3677 55555 8999999999999886   6889999998


Q ss_pred             ccCCCCCCceeeeEEEeCcccccC---CCCCCCceeEEEEEeCCCCCCccEEEEEEEEcc
Q 021710           94 SKLSETPKPLVGSVKFPLAHLVDS---DSSEPTQYVRKLEVLRPSGRPQGKIRVKLVLNG  150 (308)
Q Consensus        94 ~~~~~~~d~lLG~~~ipL~~L~~~---~~~~~~~~~~~~~L~~~sg~~~G~L~v~v~~~~  150 (308)
                      ...     +||..++|++.+|+..   .+.   ....|+.|     +++|+|++.+.+.-
T Consensus        84 ~a~-----~fVAn~tV~~edL~~~ck~~~g---~~e~WvdL-----eP~Gkl~v~i~~~~  130 (138)
T 2enj_A           84 KNV-----DLISETTVELYSLAERCRKNNG---KTEIWLEL-----KPQGRMLMNARYFL  130 (138)
T ss_dssp             SSC-----SCCEEEEEESHHHHHHHHHTTT---CEEEEEEC-----BSSCEEEEEEEECC
T ss_pred             CCC-----CeeeEEEEEHHHHHhhhccCCC---ceEEEEec-----ccCcEEEEEEEEEE
Confidence            762     7999999999999854   222   45799999     67999999999964

>1yrk_A NPKC-delta, protein kinase C, delta type; C2 domain, protein binding; HET: PTR; 1.70A {Homo sapiens} PDB: 1bdy_A

Probab=99.18  E-value=5e-10  Score=89.91  Aligned_cols=115  Identities=16%  Similarity=0.188  Sum_probs=84.7

Q ss_pred             cEEEEEEEEeecCCCCCCCCCCCCCcEEEEEEcCCc---eEEE-EeecCCCCCCccccEEEEeeeCCCCCceEEEEEEec
Q 021710           19 HDLEITIICAKHLKNVNWRNGGDLKPYVVFYVDPAY---RLAT-QSDDSGSTRPVWNERFTLPITHSVRESVLTLEIFHS   94 (308)
Q Consensus        19 ~~L~VtIisAk~L~~~~~~~~~~~dPYv~v~l~~~~---k~kT-~v~k~gt~nP~WnE~f~f~l~~~~~~~~L~l~V~d~   94 (308)
                      ..|+|.+.++.--.... .+. ..||||.|.++...   +.+| .+.++ |..|+|||+|.-.+.+   ...|.|.|||.
T Consensus         6 ~flRi~~~~~~~~~~~~-~~~-~lDPy~aV~vdE~~~~e~g~t~~~K~k-T~~P~Wne~Fd~~V~~---Gr~l~i~Vfh~   79 (126)
T 1yrk_A            6 PFLRIAFNSYELGSLQA-EDE-ANQPFCAVKMKEALSTERGKTLVQKKP-TMYPEWKSTFDAHIYE---GRVIQIVLMRA   79 (126)
T ss_dssp             CEEEEEEEEEECSSCCC-SSS-SCCCEEEEEEEEEEEETTEEEEECCSC-CBCCCTTCEEEEECCT---TCEEEEEEEEE
T ss_pred             ccEEeeeccccccccCC-ccc-cCCceEEEEeeeeEEcccceeecccCC-CCCcCccceEEeeeeC---CEEEEEEEEcC
Confidence            56888887766422222 112 49999999998633   2366 44455 9999999999999986   68899999987


Q ss_pred             cCCCCCCceeeeEEEeCcccccCCCCCCCceeEEEEEeCCCCCCccEEEEEEEEc
Q 021710           95 KLSETPKPLVGSVKFPLAHLVDSDSSEPTQYVRKLEVLRPSGRPQGKIRVKLVLN  149 (308)
Q Consensus        95 ~~~~~~d~lLG~~~ipL~~L~~~~~~~~~~~~~~~~L~~~sg~~~G~L~v~v~~~  149 (308)
                      ..     +||..++|++++|.......+.....|+.|     +++|+|++.+.+.
T Consensus        80 a~-----~fvAn~tV~~edL~~~c~~~~g~~e~WvdL-----eP~Gkl~~~i~~~  124 (126)
T 1yrk_A           80 AE-----EPVSEVTVGVSVLAERCKKNNGKAEFWLDL-----QPQAKVLMSVQYF  124 (126)
T ss_dssp             TT-----EEEEEEEEEHHHHHHHHHTTTTEEEEEEEC-----BSSCEEEEEEEEE
T ss_pred             CC-----CeeeEEEEEHHHHHhhhccCCCceEEEEec-----ccCcEEEEEEEEe
Confidence            62     799999999999985411101155789999     6799999999874

>2yrb_A Protein fantom; beta sandwich, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: b.7.1.1

Probab=96.44  E-value=0.011  Score=49.07  Aligned_cols=128  Identities=11%  Similarity=0.115  Sum_probs=87.8

Q ss_pred             CcccEEEEEEEEeecCCCCCC-CCCCCCCcEEEEEEcCCceEEEEeecCCCCCCccccEEEEeeeCC------CCCceEE
Q 021710           16 PITHDLEITIICAKHLKNVNW-RNGGDLKPYVVFYVDPAYRLATQSDDSGSTRPVWNERFTLPITHS------VRESVLT   88 (308)
Q Consensus        16 ~~~~~L~VtIisAk~L~~~~~-~~~~~~dPYv~v~l~~~~k~kT~v~k~gt~nP~WnE~f~f~l~~~------~~~~~L~   88 (308)
                      ..-+.++|.|.++.--+..-. .+...+..||++.+-.-+.+.|.+++  +.+|.+|.+-.|.+...      +....|.
T Consensus        15 ~gEnlfEihi~~~~~~~~~l~~~~d~~p~tF~t~dF~dfEtq~Tpv~~--G~~p~y~fts~Y~V~~d~~fl~yL~~~~l~   92 (156)
T 2yrb_A           15 RGENLFEIHINKVTFSSEVLQASGDKEPVTFCTYAFYDFELQTTPVVR--GLHPEYNFTSQYLVHVNDLFLQYIQKNTIT   92 (156)
T ss_dssp             SSCEEEEEEEEEECCCHHHHHHHCSSCCEEEEEECSTTCCCEECCCEE--SSSCCCCEEEEEEECCSHHHHHHHHHCCEE
T ss_pred             CCCcEEEEEEeEEEEcHHHHhhccccCCcEEEEEEEeceEeeeccccc--CCCCCcceEEEEEEEeCHHHHHHHhcCCEE
Confidence            345889999988763111100 11101334566555445788888887  48999999888887542      2445788


Q ss_pred             EEEEeccCCCCCCceeeeEEEeCcccccCCCCCCCceeEEEEEeCCCC--CCccEEEEEEEEccC
Q 021710           89 LEIFHSKLSETPKPLVGSVKFPLAHLVDSDSSEPTQYVRKLEVLRPSG--RPQGKIRVKLVLNGR  151 (308)
Q Consensus        89 l~V~d~~~~~~~d~lLG~~~ipL~~L~~~~~~~~~~~~~~~~L~~~sg--~~~G~L~v~v~~~~~  151 (308)
                      |++....  ....+.||.++|+|.+|+....    .......|...++  ..-|.|.+.|+++..
T Consensus        93 lELhqa~--g~~~~tla~~~I~l~~lLe~~~----~i~g~~~L~g~~g~~~~~G~LeywiRL~~P  151 (156)
T 2yrb_A           93 LEVHQAY--STEYETIAACQLKFHEILEKSG----RIFCTASLIGTKGDIPNFGTVEYWFRLRVS  151 (156)
T ss_dssp             EEEEEEC--SSCEEEEEEEEECCSHHHHCCS----CEEEEEEECBSSSCCTTSEEEEEEEEEEEC
T ss_pred             EEEEEee--CCCceEEEEEEEEhHHhhCcCC----ceEEEEEEEcCCCCcceEEEEEEEEEEecc
Confidence            8888764  3356799999999999997643    2345668887777  568999999999764

>3l4c_A Dedicator of cytokinesis protein 1; DOCK180, DOCK1, phosphoinositide specificity, guanine exchan factor, RHO GTPase, cytoskeleton, cell migration; 2.37A {Homo sapiens}

Probab=95.49  E-value=0.22  Score=43.49  Aligned_cols=57  Identities=16%  Similarity=0.196  Sum_probs=40.2

Q ss_pred             ceEEEEeecCCCCCCccccEEEEeeeCC-CCCceEEEEEEeccCCC---CCCceeeeEEEeC
Q 021710           54 YRLATQSDDSGSTRPVWNERFTLPITHS-VRESVLTLEIFHSKLSE---TPKPLVGSVKFPL  111 (308)
Q Consensus        54 ~k~kT~v~k~gt~nP~WnE~f~f~l~~~-~~~~~L~l~V~d~~~~~---~~d~lLG~~~ipL  111 (308)
                      ...+|.|... +.+|.|+|++.+.|+.. .....|.|+++|.....   ..+..+|.+.+||
T Consensus        77 se~~S~V~YH-nk~P~w~EtIKi~LP~~~~~~~HLlFtFrH~S~~~k~dk~E~pfg~a~lPL  137 (220)
T 3l4c_A           77 SEYKSVIYYQ-VKQPRWFETVKVAIPIEDVNRSHLRFTFRHRSSQDSKDKSEKIFALAFVKL  137 (220)
T ss_dssp             SCEECCCCTT-CSSCCCCEEEEEEECTTSSTTEEEEEEEEECCCCSSCCCCCCEEEEEEEES
T ss_pred             eeEEEEEEEc-CCCCCceEeEEEeeChhhcCCeEEEEEEEEecccccccccCCeeEEEEEEc
Confidence            4678888887 78999999999999865 35678999999865221   1123455555554

>1dx0_A Prion protein; brain, repeat; NMR {Bos taurus} SCOP: d.6.1.1 PDB: 1dx1_A 1qlx_A 1qlz_A

Probab=93.90  E-value=0.0042  Score=53.59  Aligned_cols=30  Identities=17%  Similarity=0.161  Sum_probs=11.0

Q ss_pred             CCCCCcCcchhhHHHHHHhhhhhhHHHHhh
Q 021710          253 GPSAPVDYSPYDQKLQKQFGGLSLEEEVNR  282 (308)
Q Consensus       253 ~~~~g~g~gl~~ga~~g~lgg~~~~~~~~~  282 (308)
                      +++++|.++.|+||++|+|+|.+|+++++.
T Consensus        96 kg~~g~a~aAa~Gag~G~LGGalLG~a~~~  125 (219)
T 1dx0_A           96 TNMKHVAGAAAAGAVVGGLGGYMLGSAMSR  125 (219)
T ss_dssp             -----------------CCCSCEECCCCCC
T ss_pred             CCcchHHHHHHHHHHhhhhhhhhhhccccc
Confidence            445678888889999999999999887654

>2wxf_A Phosphatidylinositol-4,5-bisphosphate 3-kinase Ca subunit delta isoform; transferase, phosphoprotein, isoform-specific inhibitors; HET: 039; 1.90A {Mus musculus} PDB: 2wxg_A* 2wxh_A* 2wxi_A* 2wxj_A* 2wxk_A* 2wxl_A* 2wxm_A* 2wxn_A* 2wxo_A* 2wxp_A* 2wxq_A* 2wxr_A 2x38_A*

Probab=91.57  E-value=0.67  Score=48.77  Aligned_cols=72  Identities=15%  Similarity=0.296  Sum_probs=49.1

Q ss_pred             ccEEEEEEEEeecCCCCCCCCCCCCCcEEEEEE--cC---CceEEEEeecCCCCCCccccEEEEeeeC--CCCCceEEEE
Q 021710           18 THDLEITIICAKHLKNVNWRNGGDLKPYVVFYV--DP---AYRLATQSDDSGSTRPVWNERFTLPITH--SVRESVLTLE   90 (308)
Q Consensus        18 ~~~L~VtIisAk~L~~~~~~~~~~~dPYv~v~l--~~---~~k~kT~v~k~gt~nP~WnE~f~f~l~~--~~~~~~L~l~   90 (308)
                      ...+.|+|+++.++...+     ..+-||.+.+  +.   .....|+.+.. ..++.|||.++|++.-  -.....|.|.
T Consensus       216 ~~~f~i~i~~~~~~~~~~-----~~~~~V~~~l~~g~~~l~~~~~T~~~~~-~~~~~Wne~l~f~i~i~dLPr~a~L~~t  289 (940)
T 2wxf_A          216 EQPFSIELIEGRKVNADE-----RMKLVVQAGLFHGNEMLCKTVSSSEVNV-CSEPVWKQRLEFDISVCDLPRMARLCFA  289 (940)
T ss_dssp             CSEEEEEEEEEECCCC--------CEEEEEEEEEETTEESSCCEECCCEES-CSSCEEEEEEEEEEEGGGCCTTCEEEEE
T ss_pred             CCceEEEEEEecccCCCC-----CceEEEEEEEEECCEEccCceecccccC-CCCcccceEEEcccccccCCcccEEEEE
Confidence            467999999999886431     3677887766  22   12334444443 5789999999998753  2357899999


Q ss_pred             EEecc
Q 021710           91 IFHSK   95 (308)
Q Consensus        91 V~d~~   95 (308)
                      ||+..
T Consensus       290 i~~~~  294 (940)
T 2wxf_A          290 LYAVV  294 (940)
T ss_dssp             EEEEC
T ss_pred             EEEec
Confidence            99954

>3hhm_A Phosphatidylinositol-4,5-bisphosphate 3-kinase catalytic subunit alpha isoform; PI3KCA, PI3K, PIK3R1, phosphatidilynositol 3,4,5- triphosphate, wortmannin, H1047R, ATP-binding, disease mutation, kinase; HET: KWT; 2.80A {Homo sapiens} PDB: 3hiz_A 2rd0_A 4a55_A* 2enq_A

Probab=89.36  E-value=1.6  Score=46.47  Aligned_cols=92  Identities=25%  Similarity=0.233  Sum_probs=58.5

Q ss_pred             ccEEEEEEEEeecCCCCCCCCCCCCCcEEEEEEcC--C---ceEEEEeecCCCCCCccccEEEEeeeC--CCCCceEEEE
Q 021710           18 THDLEITIICAKHLKNVNWRNGGDLKPYVVFYVDP--A---YRLATQSDDSGSTRPVWNERFTLPITH--SVRESVLTLE   90 (308)
Q Consensus        18 ~~~L~VtIisAk~L~~~~~~~~~~~dPYv~v~l~~--~---~k~kT~v~k~gt~nP~WnE~f~f~l~~--~~~~~~L~l~   90 (308)
                      ...++|+|+++.++.. ++..  ..+-||.+.+-.  .   ...+|+.+.  ..++.|||.++|++.-  -.....|.|.
T Consensus       354 ~~~f~v~i~~~~~~n~-~~~~--~~~~~V~~~l~hG~~~L~~~~~T~~~~--~~~~~Wne~l~f~i~i~dLPr~arL~~t  428 (1091)
T 3hhm_A          354 NSALRIKILCATYVNV-NIRD--IDKIYVRTGIYHGGEPLCDNVNTQRVP--CSNPRWNEWLNYDIYIPDLPRAARLCLS  428 (1091)
T ss_dssp             CSEEEEEEEEESCCCC-CCSS--CCCCCEEEEEESSSCSSCCEECCCCCC--TTSCEEEEEEEEEEEGGGCCTTCEEEEE
T ss_pred             CCCEEEEEEEecCCCC-Cccc--cceEEEEEEEEECCEEccCceeccccC--CCCCCCCeeEEecCccccCChhcEEEEE
Confidence            3678999999988753 3322  367888888732  1   233344332  4578899999998752  2367899999


Q ss_pred             EEeccCCC---CCCceeeeEEEeCccc
Q 021710           91 IFHSKLSE---TPKPLVGSVKFPLAHL  114 (308)
Q Consensus        91 V~d~~~~~---~~d~lLG~~~ipL~~L  114 (308)
                      ||+.....   ..+..||.+.++|-+.
T Consensus       429 l~~~~~~~~~~~~~~~lg~~n~~lfd~  455 (1091)
T 3hhm_A          429 ICSVKGRKGAKEEHCPLAWGNINLFDY  455 (1091)
T ss_dssp             ECCCCCCC-------CCEEEEEESBCT
T ss_pred             EEEecCccCcccccceeEEeeeeeEcc
Confidence            99865211   1234678877777654

>1tpx_A Prion protein, major prion protein; antibody, unknown function; 2.56A {Ovis aries} SCOP: d.6.1.1

Probab=82.66  E-value=0.11  Score=40.87  Aligned_cols=20  Identities=15%  Similarity=0.243  Sum_probs=10.2

Q ss_pred             chhhHHHHHHhhhhhhHHHH
Q 021710          261 SPYDQKLQKQFGGLSLEEEV  280 (308)
Q Consensus       261 gl~~ga~~g~lgg~~~~~~~  280 (308)
                      +.|+|||+|.|||-||+.++
T Consensus         5 aaaaGAvvGgl~Gy~lg~a~   24 (121)
T 1tpx_A            5 AAAAGAVVGGLGGYMLGSAM   24 (121)
T ss_dssp             ---------CCTTCEECCCC
T ss_pred             hHHHhHHhhcchhHHHHhcc
Confidence            45779999999999999986

>3heq_A Major prion protein; cell membrane, disease mutation, disulfide bond, glycoprotein, golgi apparatus, GPI-anchor, lipoprotein, membrane, polymorphism; 1.80A {Homo sapiens} PDB: 2lsb_A 2k1d_A 2lej_A 2lv1_A 2lft_A 1fkc_A 1fo7_A 3haf_A 3hj5_A 1qm0_A 1qm1_A 2kun_A 3hes_A 3her_A 1b10_A 2joh_A 2fj3_A 2jom_A 2l1h_A 2l39_A ...

Probab=82.48  E-value=0.12  Score=40.88  Aligned_cols=24  Identities=13%  Similarity=0.151  Sum_probs=8.3

Q ss_pred             CcCcchhhHHHHHHhhhhhhHHHH
Q 021710          257 PVDYSPYDQKLQKQFGGLSLEEEV  280 (308)
Q Consensus       257 g~g~gl~~ga~~g~lgg~~~~~~~  280 (308)
                      -+..+-|+|||+|.|+|-||++++
T Consensus        22 ~vAgaAaAGAVvGGlgGy~lG~am   45 (142)
T 3heq_A           22 HMAGAAAAGAVVGGLGGYMLGSAM   45 (142)
T ss_dssp             ---------------CCCEECCCC
T ss_pred             HHHHHHHhhhhhhccchHHHHhhc
Confidence            355677889999999999999986

>2qzq_A Axin interactor, dorsalization associated protein; beta sheet sandwich, coiled coil, signaling protein, lipid binding protein; 1.90A {Danio rerio} PDB: 2qz5_A

Probab=82.06  E-value=2.5  Score=34.59  Aligned_cols=93  Identities=14%  Similarity=0.073  Sum_probs=56.3

Q ss_pred             cEEEEEEEEeecCCCCCCCCCCCCCcEEEEEEcC------CceEEEEee-cCCCCCCccccEEEEeee--CCCCCceEEE
Q 021710           19 HDLEITIICAKHLKNVNWRNGGDLKPYVVFYVDP------AYRLATQSD-DSGSTRPVWNERFTLPIT--HSVRESVLTL   89 (308)
Q Consensus        19 ~~L~VtIisAk~L~~~~~~~~~~~dPYv~v~l~~------~~k~kT~v~-k~gt~nP~WnE~f~f~l~--~~~~~~~L~l   89 (308)
                      ..|.|.|.+- +|++...    -.|||++|++-.      ...+.|.+. ...+..=.|+..+.+...  +-.+...+.|
T Consensus        14 t~l~v~Ie~i-glkda~~----~~~P~~tVSV~D~~G~~ve~~QdTpv~~~~~~~yv~f~~~v~lqtple~lp~G~aivf   88 (152)
T 2qzq_A           14 TLLTLTIEKI-GLKDAGQ----CIDPYITVSVKDLNGIDLNPVQDTPVATRKEDTYIHFSVDVEIQRHLEKLPKGAAIFF   88 (152)
T ss_dssp             CEEEEEEEEE-ECTTGGG----CEEEEEEEEEECTTSCBSSCCEECCCCCEECSSEEEEEEEEECSSCGGGSCTTCEEEE
T ss_pred             eEEEEEEEEE-EeCCHHH----ccCCeEEEEEEcCCCCCccccccCCCcceecCCeEEEeeEEEeeCcHHHCCCCcEEEE
Confidence            4577776665 7876543    378999999843      245666665 221333344443333322  2125678999


Q ss_pred             EEEeccCCCCCCceeeeEEEeCccccc
Q 021710           90 EIFHSKLSETPKPLVGSVKFPLAHLVD  116 (308)
Q Consensus        90 ~V~d~~~~~~~d~lLG~~~ipL~~L~~  116 (308)
                      |+.|.+.....-...+.+.+.+++|..
T Consensus        89 ElkH~k~kkkk~S~kCw~f~~~d~i~~  115 (152)
T 2qzq_A           89 EFKHYKPKKRFTSTKCFAFMEMDEIKP  115 (152)
T ss_dssp             EEEEEETTTTEEEEEEEEEEEGGGCCS
T ss_pred             EEEEecccceeeeeeeEEEEEhhhccc
Confidence            999987433233367778888888765

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	308
d1wfja_	136	b.7.1.2 (A:) C2 domain protein At1g63220 {Thale cr	1e-11
d2nq3a1	133	b.7.1.1 (A:13-145) E3 ubiquitin-protein ligase Itc	2e-11
d2bwqa1	125	b.7.1.2 (A:729-853) Regulating synaptic membrane e	6e-11
d2ep6a1	126	b.7.1.1 (A:92-217) Multiple C2 and transmembrane d	4e-10
d1a25a_	132	b.7.1.2 (A:) C2 domain from protein kinase c (beta	9e-09
d1w15a_	138	b.7.1.2 (A:) Synaptotagmin IV {Rat (Rattus norvegi	1e-08
d1gmia_	136	b.7.1.1 (A:) Domain from protein kinase C epsilon	2e-07
d2cm5a1	137	b.7.1.2 (A:541-677) C2b-domain of rabphilin {Rat (	4e-05
d1rsya_	143	b.7.1.2 (A:) Synaptogamin I {Rat (Rattus norvegicu	7e-05
d1qasa2	131	b.7.1.1 (A:626-756) PI-specific phospholipase C is	8e-05
d1uowa_	157	b.7.1.2 (A:) Synaptogamin I {Rat (Rattus norvegicu	9e-05
d1ugka_	138	b.7.1.2 (A:) Synaptotagmin IV {Human (Homo sapiens	7e-04
d1rh8a_	142	b.7.1.2 (A:) Piccolo {Rat (Rattus norvegicus) [Tax	0.002

>d1wfja_ b.7.1.2 (A:) C2 domain protein At1g63220 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 136

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: C2 domain protein At1g63220
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

 Score = 59.0 bits (142), Expect = 1e-11
 Identities = 29/126 (23%), Positives = 48/126 (38%), Gaps = 11/126 (8%)

Query: 21  LEITIICAKHLKNVNWRNGGDLKPYVVFYVDPAYRLATQSDDSGSTRPVWNERFTLPITH 80
           LE+ ++ AK L++ ++    ++ PYV           +   +   T P WNE F   ++ 
Sbjct: 12  LEVVLVSAKGLEDADF--LNNMDPYVQLTCRT-QDQKSNVAEGMGTTPEWNETFIFTVSE 68

Query: 81  SVRESVLTLEIFHSKLSETPKPLVGSVKFPLAHLVDSDSSEPTQYVRKLEVLRPSGRPQG 140
              E     +IF   +       VG    PL  +    S  PT Y      +      +G
Sbjct: 69  GTTELK--AKIFDKDVGTEDD-AVGEATIPLEPVFVEGSIPPTAY-----NVVKDEEYKG 120

Query: 141 KIRVKL 146
           +I V L
Sbjct: 121 EIWVAL 126

>d2nq3a1 b.7.1.1 (A:13-145) E3 ubiquitin-protein ligase Itchy {Human (Homo sapiens) [TaxId: 9606]} Length = 133

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: PLC-like (P variant)
domain: E3 ubiquitin-protein ligase Itchy
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 58.2 bits (140), Expect = 2e-11
 Identities = 26/130 (20%), Positives = 51/130 (39%), Gaps = 8/130 (6%)

Query: 21  LEITIICAKHLKNVNWRNGGDLKPYVVFYVDPAYRLATQSDDSGSTRPVWNERFTLPITH 80
           L+IT+I AK  +N   +N     PYV   VD   +       + +  P W +  T+ +T 
Sbjct: 8   LQITVISAKLKENK--KNWFGPSPYVEVTVDGQSK--KTEKCNNTNSPKWKQPLTVIVTP 63

Query: 81  SVRESVLTLEIFHSKLSETPKPLVGSVKFPLAHLVDSDSSEPTQYVRKLEVLRPSGRPQG 140
             +         H  L      L+G+    +   + S++ +  + V  L++       + 
Sbjct: 64  VSKLHFRV--WSHQTLKS--DVLLGTAALDIYETLKSNNMKLEEVVVTLQLGGDKEPTET 119

Query: 141 KIRVKLVLNG 150
              + + L+G
Sbjct: 120 IGDLSICLDG 129

>d2bwqa1 b.7.1.2 (A:729-853) Regulating synaptic membrane exocytosis protein, rim2 {Human (Homo sapiens) [TaxId: 9606]} Length = 125

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: Regulating synaptic membrane exocytosis protein, rim2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 56.6 bits (136), Expect = 6e-11
 Identities = 25/113 (22%), Positives = 42/113 (37%), Gaps = 8/113 (7%)

Query: 15  SPITHDLEITIICAKHLKNVNWRNGGDLKPYVVFYVDPAYRLATQSDDS---GSTRPVWN 71
             + H L +TI+ AK L +     G    PYV  Y  P      +        +  P WN
Sbjct: 10  DKVGHQLIVTILGAKDLPSRED--GRPRNPYVKIYFLPDRSDKNKRRTKTVKKTLEPKWN 67

Query: 72  ERFTLPITH--SVRESVLTLEIF-HSKLSETPKPLVGSVKFPLAHLVDSDSSE 121
           + F     H    RE +L + ++  +++ E     +G +   L   +  D   
Sbjct: 68  QTFIYSPVHRREFRERMLEITLWDQARVREEESEFLGEILIELETALLDDEPH 120

>d2ep6a1 b.7.1.1 (A:92-217) Multiple C2 and transmembrane domain-containing protein 2, MCTP2 {Human (Homo sapiens) [TaxId: 9606]} Length = 126

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: PLC-like (P variant)
domain: Multiple C2 and transmembrane domain-containing protein 2, MCTP2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 54.4 bits (130), Expect = 4e-10
 Identities = 25/126 (19%), Positives = 46/126 (36%), Gaps = 12/126 (9%)

Query: 21  LEITIICAKHLKNVNWRNGGDLKPYVVFYVDPAYRLATQSDDSGSTRPVWNERFTLPITH 80
           L++ ++ A  L   ++    D  P+ +  +              +  P WN+ FT PI  
Sbjct: 8   LQVKVLKAADLLAADFSGKSD--PFCLLELGNDRL--QTHTVYKNLNPEWNKVFTFPIKD 63

Query: 81  SVRESVLTLEIFHSKLSETPKPLVGSVKFPLAHLVDSDSSEPTQYVRKLEVLRPSGRPQG 140
                   + +F     + P  L G V  PL  + D    +P  Y   L+        +G
Sbjct: 64  IHDVL--EVTVFDEDGDKPPDFL-GKVAIPLLSIRD---GQPNCY--VLKNKDLEQAFKG 115

Query: 141 KIRVKL 146
            I +++
Sbjct: 116 VIYLEM 121

>d1a25a_ b.7.1.2 (A:) C2 domain from protein kinase c (beta) {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 132

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: C2 domain from protein kinase c (beta)
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 50.9 bits (121), Expect = 9e-09
 Identities = 25/107 (23%), Positives = 48/107 (44%), Gaps = 7/107 (6%)

Query: 12  HMSSPITHD-LEITIICAKHLKNVNWRNGGDLKPYVVFYVDPAYR---LATQSDDSGSTR 67
           ++ + I  + L + +  AK+L  ++    G   PYV   + P  +            S  
Sbjct: 7   YIQAHIDREVLIVVVRDAKNLVPMDP--NGLSDPYVKLKLIPDPKSESKQKTKTIKCSLN 64

Query: 68  PVWNERFTLPITHSVRESVLTLEIFHSKLSETPKPLVGSVKFPLAHL 114
           P WNE F   +  S ++  L++EI+   L+ +    +GS+ F ++ L
Sbjct: 65  PEWNETFRFQLKESDKDRRLSVEIWDWDLT-SRNDFMGSLSFGISEL 110

>d1w15a_ b.7.1.2 (A:) Synaptotagmin IV {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 138

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: Synaptotagmin IV
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 50.9 bits (121), Expect = 1e-08
 Identities = 22/127 (17%), Positives = 46/127 (36%), Gaps = 14/127 (11%)

Query: 16  PITHDLEITIICAKHLKNVNWRNGGDLKPYVVFYVDPAYRLATQSDDS---GSTRPVWNE 72
             T+ L + ++ A+HL   +    G   PYV   +  A +  ++        +   V+NE
Sbjct: 12  STTNTLTVVVLKARHLPKSDV--SGLSDPYVKVNLYHAKKRISKKKTHVKKCTPNAVFNE 69

Query: 73  RFTLPITH-SVRESVLTLEIFHSKLSETPKPLVGSVKFPLAHLVDSDSSEPTQYVRKLEV 131
            F   I   S+ E  +   +  S+   +   ++G +           ++E +      E+
Sbjct: 70  LFVFDIPCESLEEISVEFLVLDSERG-SRNEVIGRLVLGA-------TAEGSGGGHWKEI 121

Query: 132 LRPSGRP 138
                R 
Sbjct: 122 CDFPRRQ 128

>d1gmia_ b.7.1.1 (A:) Domain from protein kinase C epsilon {Rat (Rattus rattus) [TaxId: 10117]} Length = 136

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: PLC-like (P variant)
domain: Domain from protein kinase C epsilon
species: Rat (Rattus rattus) [TaxId: 10117]

 Score = 47.2 bits (111), Expect = 2e-07
 Identities = 30/139 (21%), Positives = 50/139 (35%), Gaps = 22/139 (15%)

Query: 21  LEITIICAKHLKNVNW---------RNGGDLKPYVVFYVDPAYRLATQSDDSGSTRPVWN 71
           L+I I  A  LK   W              L PY+   VD   R+   +    +  P W+
Sbjct: 8   LKIKICEAVSLKPTAWSLRDAVGPRPQTFLLDPYIALNVDD-SRIGQTATKQKTNSPAWH 66

Query: 72  ERFTLPITHSVRESVLTLEIFHSKLSETPKPLVGSVKFPLAHLVDSDSSEPTQYVRKLEV 131
           + F   + +  +     L +FH          V +       L+ + S     ++  LE 
Sbjct: 67  DEFVTDVCNGRKI---ELAVFHDAPIGYDDF-VANCTIQFEELLQNGSRHFEDWI-DLE- 120

Query: 132 LRPSGRPQGKIRVKLVLNG 150
                 P+GK+ V + L+G
Sbjct: 121 ------PEGKVYVIIDLSG 133

>d2cm5a1 b.7.1.2 (A:541-677) C2b-domain of rabphilin {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 137

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: C2b-domain of rabphilin
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 40.6 bits (94), Expect = 4e-05
 Identities = 18/99 (18%), Positives = 29/99 (29%), Gaps = 5/99 (5%)

Query: 15  SPITHDLEITIICAKHLKNVNWRNGGDLKPYVVFYVDPAYRLATQSDDS---GSTRPVWN 71
           S     L + II   HL  ++     D  P+V  ++ P      +        +  P +N
Sbjct: 11  STQQGGLIVGIIRCVHLAAMDANGYSD--PFVKLWLKPDMGKKAKHKTQIKKKTLNPEFN 68

Query: 72  ERFTLPITHSVRESVLTLEIFHSKLSETPKPLVGSVKFP 110
           E F   I HS                      +G  +  
Sbjct: 69  EEFFYDIKHSDLAKKSLDISVWDYDIGKSNDYIGGCQLG 107

>d1rsya_ b.7.1.2 (A:) Synaptogamin I {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 143

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: Synaptogamin I
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 40.1 bits (93), Expect = 7e-05
 Identities = 25/117 (21%), Positives = 48/117 (41%), Gaps = 6/117 (5%)

Query: 15  SPITHDLEITIICAKHLKNVNWRNGGDLKPYVVFYVDPAYRLATQSD-DSGSTRPVWNER 73
               + L + II A  L  ++   GG   PYV  ++ P  +   ++     +  PV+NE+
Sbjct: 30  DFQNNQLLVGIIQAAELPALDM--GGTSDPYVKVFLLPDKKKKFETKVHRKTLNPVFNEQ 87

Query: 74  FTLPITHSVRESVLTLEIFHSKLSETPKPLVGSVKFPLAHLVDSDSSEPTQYVRKLE 130
           FT  + +S       +   +     +   ++G  K P+  +   D    T+  R L+
Sbjct: 88  FTFKVPYSELGGKTLVMAVYDFDRFSKHDIIGEFKVPMNTV---DFGHVTEEWRDLQ 141

>d1qasa2 b.7.1.1 (A:626-756) PI-specific phospholipase C isozyme D1 (PLC-D1), C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 131

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: PLC-like (P variant)
domain: PI-specific phospholipase C isozyme D1 (PLC-D1), C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 39.7 bits (92), Expect = 8e-05
 Identities = 16/97 (16%), Positives = 29/97 (29%), Gaps = 6/97 (6%)

Query: 21  LEITIICAKHLKNVNWRNGGDLKPYVVFYVDPA----YRLATQSDDSGSTRPVWNERFTL 76
           L + II  + L  VN      + P V+  +           T    +    P W+  F  
Sbjct: 6   LRVRIISGQQLPKVNKNKNSIVDPKVIVEIHGVGRDTGSRQTAVITNNGFNPRWDMEFEF 65

Query: 77  PITHSVRESVLTLEIFHSKLSETPKPLVGSVKFPLAH 113
            +T     +++   +     S     + G    P   
Sbjct: 66  EVTVP-DLALVRFMVEDYDSSSKNDFI-GQSTIPWNS 100

>d1uowa_ b.7.1.2 (A:) Synaptogamin I {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 157

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: Synaptogamin I
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 39.8 bits (92), Expect = 9e-05
 Identities = 23/126 (18%), Positives = 43/126 (34%), Gaps = 12/126 (9%)

Query: 16  PITHDLEITIICAKHLKNVNWRNGGDLKPYVVFYV---DPAYRLATQSDDSGSTRPVWNE 72
           P    L + I+ AK+LK ++   GG   PYV  ++       +    +    +  P +NE
Sbjct: 22  PTAGKLTVVILEAKNLKKMDV--GGLSDPYVKIHLMQNGKRLKKKKTTIKKNTLNPYYNE 79

Query: 73  RFTLPITHSVRESVLTLEIFHSKLSETPKPLVGSVKFPLAHLVDSDSSEPTQYVRKLEVL 132
            F+  +     + V  +              +G V           +S   +     ++L
Sbjct: 80  SFSFEVPFEQIQKVQVVVTVLDYDKIGKNDAIGKVFVGY-------NSTGAELRHWSDML 132

Query: 133 RPSGRP 138
               RP
Sbjct: 133 ANPRRP 138

>d1ugka_ b.7.1.2 (A:) Synaptotagmin IV {Human (Homo sapiens) [TaxId: 9606]} Length = 138

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: Synaptotagmin IV
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.0 bits (85), Expect = 7e-04
 Identities = 21/124 (16%), Positives = 45/124 (36%), Gaps = 8/124 (6%)

Query: 15  SPITHDLEITIICAKHLKNVNWRNGGDLKPYVVFYVDPAYRLATQSD-DSGSTRPVWNER 73
           +       + I  A+ L  ++        PY+   + P  +   ++     +  P ++E 
Sbjct: 18  NFERKAFVVNIKEARGLPAMD-EQSMTSDPYIKMTILPEKKHKVKTRVLRKTLDPAFDET 76

Query: 74  FTLPITH--SVRESVLTLEIFHSKLSETPKPLVGSVKFPLAHLVDSDSSEPTQYVRKLEV 131
           FT        ++E  L   I       +   ++G V  PL+ +   + SE    + +  +
Sbjct: 77  FTFYGIPYTQIQELALHFTILSFDRF-SRDDIIGEVLIPLSGI---ELSEGKMLMNREII 132

Query: 132 LRPS 135
             PS
Sbjct: 133 SGPS 136

>d1rh8a_ b.7.1.2 (A:) Piccolo {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 142

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: Piccolo
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 35.3 bits (80), Expect = 0.002
 Identities = 20/118 (16%), Positives = 39/118 (33%), Gaps = 17/118 (14%)

Query: 18  THDLEITIICAKHLKNVNWRNGGDLKPYVVFYVDPAYRLATQSDDS------------GS 65
             +L I I+ A++L   +     D  P+V  Y+ P         ++             S
Sbjct: 17  LGNLIIHILQARNLVPRDNNGYSD--PFVKVYLLPGRGQVMVVQNASAEYKRRTKYVQKS 74

Query: 66  TRPVWNERFTLPIT--HSVRESVLTLEIFHSKLSETPKPLVGSVKFPLAHLVDSDSSE 121
             P WN+           + +  L + ++      +   L G V   L+     D++ 
Sbjct: 75  LNPEWNQTVIYKSISMEQLMKKTLEVTVWDYDRFSSNDFL-GEVLIDLSSTSHLDNTP 131

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	308
d1wfja_	136	C2 domain protein At1g63220 {Thale cress (Arabidop	99.87
d2ep6a1	126	Multiple C2 and transmembrane domain-containing pr	99.86
d1gmia_	136	Domain from protein kinase C epsilon {Rat (Rattus	99.84
d1qasa2	131	PI-specific phospholipase C isozyme D1 (PLC-D1), C	99.83
d2nq3a1	133	E3 ubiquitin-protein ligase Itchy {Human (Homo sap	99.82
d1rlwa_	126	Domain from cytosolic phospholipase A2 {Human (Hom	99.82
d1a25a_	132	C2 domain from protein kinase c (beta) {Rat (Rattu	99.77
d1dqva1	130	Synaptotagmin III {Rat (Rattus norvegicus) [TaxId:	99.75
d2cjta1	128	Unc-13 homolog A {Rat (Rattus norvegicus) [TaxId:	99.75
d1rsya_	143	Synaptogamin I {Rat (Rattus norvegicus) [TaxId: 10	99.74
d1rh8a_	142	Piccolo {Rat (Rattus norvegicus) [TaxId: 10116]}	99.71
d1ugka_	138	Synaptotagmin IV {Human (Homo sapiens) [TaxId: 960	99.7
d2bwqa1	125	Regulating synaptic membrane exocytosis protein, r	99.69
d1wfma_	138	Synaptotagmin XIII {Human (Homo sapiens) [TaxId: 9	99.67
d2cm5a1	137	C2b-domain of rabphilin {Rat (Rattus norvegicus) [	99.66
d1w15a_	138	Synaptotagmin IV {Rat (Rattus norvegicus) [TaxId:	99.65
d1uowa_	157	Synaptogamin I {Rat (Rattus norvegicus) [TaxId: 10	99.64
d1bdya_	123	Domain from protein kinase C delta {Rat (Rattus no	99.64
d2zkmx2	122	Phospholipase C-beta-2 {Human (Homo sapiens) [TaxI	99.63
d1dqva2	145	Synaptotagmin III {Rat (Rattus norvegicus) [TaxId:	99.55
d2yrba1	142	Fantom {Human (Homo sapiens) [TaxId: 9606]}	96.16
d1e7ua2	174	Phoshoinositide 3-kinase (PI3K) {Pig (Sus scrofa)	94.77

>d1wfja_ b.7.1.2 (A:) C2 domain protein At1g63220 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: C2 domain protein At1g63220
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=99.87  E-value=1.4e-22  Score=164.78  Aligned_cols=124  Identities=23%  Similarity=0.401  Sum_probs=104.9

Q ss_pred             cccEEEEEEEEeecCCCCCCCCCCCCCcEEEEEEcCCceEEEEeecCCCCCCccccEEEEeeeCCCCCceEEEEEEeccC
Q 021710           17 ITHDLEITIICAKHLKNVNWRNGGDLKPYVVFYVDPAYRLATQSDDSGSTRPVWNERFTLPITHSVRESVLTLEIFHSKL   96 (308)
Q Consensus        17 ~~~~L~VtIisAk~L~~~~~~~~~~~dPYv~v~l~~~~k~kT~v~k~gt~nP~WnE~f~f~l~~~~~~~~L~l~V~d~~~   96 (308)
                      +.++|+|+|++|++|+..++.++  +||||+++++. .+.+|+++++++.||+|||+|.|.+..  ....|+|+|||++.
T Consensus         8 p~G~L~V~v~~a~~L~~~d~~g~--~Dpyv~v~~~~-~~~~t~~~~~~~~nP~Wne~f~f~v~~--~~~~L~v~V~d~d~   82 (136)
T d1wfja_           8 PHGTLEVVLVSAKGLEDADFLNN--MDPYVQLTCRT-QDQKSNVAEGMGTTPEWNETFIFTVSE--GTTELKAKIFDKDV   82 (136)
T ss_dssp             CEEEEEEEEEEEEECSSCCSSCS--SCCCEEEESSS-CEEECCCCTTCCSSCEEEEEEEEEEES--SCCEEEEEECCSSS
T ss_pred             CcEEEEEEEEEeeCCCCCCCCCC--CCccEEEEEee-eeEEEEEEecCCCcEEEeeEEEEEEcC--ccceEEEEEEEecC
Confidence            45899999999999999998775  99999999986 678899988668999999999999987  35679999999983


Q ss_pred             CCCCCceeeeEEEeCcccccCCCCCCCceeEEEEEeCCCCCCccEEEEEEEEccC
Q 021710           97 SETPKPLVGSVKFPLAHLVDSDSSEPTQYVRKLEVLRPSGRPQGKIRVKLVLNGR  151 (308)
Q Consensus        97 ~~~~d~lLG~~~ipL~~L~~~~~~~~~~~~~~~~L~~~sg~~~G~L~v~v~~~~~  151 (308)
                       ..+|++||+++|+|.++.....    ....|+.|.. +++..|+|+|++.|.+.
T Consensus        83 -~~~d~~iG~~~i~L~~l~~~~~----~~~~~~~l~~-~~~~~G~i~l~l~~~p~  131 (136)
T d1wfja_          83 -GTEDDAVGEATIPLEPVFVEGS----IPPTAYNVVK-DEEYKGEIWVALSFKPS  131 (136)
T ss_dssp             -CTTTCCSEEEEEESHHHHHHSE----EEEEEEEEEE-TTEEEEEEEEEEEEEEC
T ss_pred             -CCCCCEEEEEEEEhHHhcccCC----cCcEEEEecC-CCccCEEEEEEEEEEeC
Confidence             5688999999999999865422    3467898864 46678999999999754

>d2ep6a1 b.7.1.1 (A:92-217) Multiple C2 and transmembrane domain-containing protein 2, MCTP2 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: PLC-like (P variant)
domain: Multiple C2 and transmembrane domain-containing protein 2, MCTP2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.86  E-value=1.2e-21  Score=157.22  Aligned_cols=119  Identities=22%  Similarity=0.374  Sum_probs=100.6

Q ss_pred             cccEEEEEEEEeecCCCCCCCCCCCCCcEEEEEEcCCceEEEEeecCCCCCCccccEEEEeeeCCCCCceEEEEEEeccC
Q 021710           17 ITHDLEITIICAKHLKNVNWRNGGDLKPYVVFYVDPAYRLATQSDDSGSTRPVWNERFTLPITHSVRESVLTLEIFHSKL   96 (308)
Q Consensus        17 ~~~~L~VtIisAk~L~~~~~~~~~~~dPYv~v~l~~~~k~kT~v~k~gt~nP~WnE~f~f~l~~~~~~~~L~l~V~d~~~   96 (308)
                      +.+.|+|+|++|++|+..+..+.  +||||++++++ .+++|+++++ +.||+|||+|.|.+...  ...|.|+|||++.
T Consensus         4 ~~G~L~V~v~~A~~L~~~d~~g~--~Dpyv~v~~~~-~~~~T~~~~~-t~nP~wne~f~f~v~~~--~~~L~i~V~d~~~   77 (126)
T d2ep6a1           4 DVGILQVKVLKAADLLAADFSGK--SDPFCLLELGN-DRLQTHTVYK-NLNPEWNKVFTFPIKDI--HDVLEVTVFDEDG   77 (126)
T ss_dssp             CSEEEEEEEEEEESCCCSSSSSC--CCEEEEEEETT-EEEECCCCSS-CSSCCCCEEEEEEESCT--TCEEEEEEEEEET
T ss_pred             ccEEEEEEEEEeECCCCCCCCCC--cCeEEEEEcCC-eEEEEEeeCC-ceeEEEEEEEEEEEecc--CceeEEEEEEccC
Confidence            34899999999999999987765  99999999986 7899999998 89999999999999863  5689999999883


Q ss_pred             CCCCCceeeeEEEeCcccccCCCCCCCceeEEEEEeCC--CCCCccEEEEEEEEc
Q 021710           97 SETPKPLVGSVKFPLAHLVDSDSSEPTQYVRKLEVLRP--SGRPQGKIRVKLVLN  149 (308)
Q Consensus        97 ~~~~d~lLG~~~ipL~~L~~~~~~~~~~~~~~~~L~~~--sg~~~G~L~v~v~~~  149 (308)
                       ...|++||++.|+|+++..+.       ..|+.|...  .++.+|+|+|++.+.
T Consensus        78 -~~~d~~lG~~~i~l~~l~~~~-------~~~~~l~~~~~~~~~~G~i~l~~~~i  124 (126)
T d2ep6a1          78 -DKPPDFLGKVAIPLLSIRDGQ-------PNCYVLKNKDLEQAFKGVIYLEMDLI  124 (126)
T ss_dssp             -TEEEEECCBCEEEGGGCCSSC-------CEECCCBCSCTTSCCSSEEEEEEEEE
T ss_pred             -CcCcceEEEEEEEHHHCCCCC-------ceEEEccccCCCCceeEEEEEEEEEE
Confidence             567899999999999986532       367777543  455689999999885

>d1gmia_ b.7.1.1 (A:) Domain from protein kinase C epsilon {Rat (Rattus rattus) [TaxId: 10117]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: PLC-like (P variant)
domain: Domain from protein kinase C epsilon
species: Rat (Rattus rattus) [TaxId: 10117]

Probab=99.84  E-value=1.1e-20  Score=153.95  Aligned_cols=121  Identities=23%  Similarity=0.411  Sum_probs=99.6

Q ss_pred             ccEEEEEEEEeecCCCCCC---------CCCCCCCcEEEEEEcCCceEEEEeecCCCCCCccccEEEEeeeCCCCCceEE
Q 021710           18 THDLEITIICAKHLKNVNW---------RNGGDLKPYVVFYVDPAYRLATQSDDSGSTRPVWNERFTLPITHSVRESVLT   88 (308)
Q Consensus        18 ~~~L~VtIisAk~L~~~~~---------~~~~~~dPYv~v~l~~~~k~kT~v~k~gt~nP~WnE~f~f~l~~~~~~~~L~   88 (308)
                      ++.|+|+|++|++|+..++         ...+.+||||++.++.....+|+++++ +.||+|||+|.|.+.+   ...|+
T Consensus         5 ~G~L~v~I~~A~~L~~~~~~~~~~~~~~~~~~~~DPYv~v~l~~~~~~~T~~~~~-t~~P~Wne~f~f~v~~---~~~l~   80 (136)
T d1gmia_           5 NGLLKIKICEAVSLKPTAWSLRDAVGPRPQTFLLDPYIALNVDDSRIGQTATKQK-TNSPAWHDEFVTDVCN---GRKIE   80 (136)
T ss_dssp             EEEEEEEEEEEESCCCCHHHHCC-CCSSCCCCCCCEEEEEEETTEEEEECCCCSS-CSSCEEEEEEEEEEEE---ECEEE
T ss_pred             EEEEEEEEEEeECCCcccccccccccccCCCCCcCcEEEEEeCCCcCcEeeEEcC-CCCccCccEEEEEEec---CCceE
Confidence            5899999999999986531         011258999999999766678998887 8999999999999975   46899


Q ss_pred             EEEEeccCCCCCCceeeeEEEeCcccccCCCCCCCceeEEEEEeCCCCCCccEEEEEEEEccC
Q 021710           89 LEIFHSKLSETPKPLVGSVKFPLAHLVDSDSSEPTQYVRKLEVLRPSGRPQGKIRVKLVLNGR  151 (308)
Q Consensus        89 l~V~d~~~~~~~d~lLG~~~ipL~~L~~~~~~~~~~~~~~~~L~~~sg~~~G~L~v~v~~~~~  151 (308)
                      |+|||++. ..+|++||++.|+|++|......   ....|++|.     ++|+|+|+|.+...
T Consensus        81 i~V~d~~~-~~~d~~iG~~~i~l~~l~~~~~~---~~~~w~~L~-----p~G~v~l~v~~~~~  134 (136)
T d1gmia_          81 LAVFHDAP-IGYDDFVANCTIQFEELLQNGSR---HFEDWIDLE-----PEGKVYVIIDLSGS  134 (136)
T ss_dssp             EEEEECCS-SSSCEEEEEEEEEHHHHTSTTCS---EEEEEEECB-----SSCEEEEEEEEEEE
T ss_pred             EEEEEecC-CCCceeEEEEEEEHHHhhhcCCc---ceeEEEeCC-----CCcEEEEEEEEEeC
Confidence            99999983 56889999999999999876543   456899994     58999999998753

>d1qasa2 b.7.1.1 (A:626-756) PI-specific phospholipase C isozyme D1 (PLC-D1), C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: PLC-like (P variant)
domain: PI-specific phospholipase C isozyme D1 (PLC-D1), C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.83  E-value=5.8e-20  Score=148.45  Aligned_cols=122  Identities=18%  Similarity=0.324  Sum_probs=97.2

Q ss_pred             cEEEEEEEEeecCCCCCCCCCCCCCcEEEEEEcC----CceEEEEeecCCCCCCccccEEEEeeeCCCCCceEEEEEEec
Q 021710           19 HDLEITIICAKHLKNVNWRNGGDLKPYVVFYVDP----AYRLATQSDDSGSTRPVWNERFTLPITHSVRESVLTLEIFHS   94 (308)
Q Consensus        19 ~~L~VtIisAk~L~~~~~~~~~~~dPYv~v~l~~----~~k~kT~v~k~gt~nP~WnE~f~f~l~~~~~~~~L~l~V~d~   94 (308)
                      ..|+|+|++|++|...+....+.+||||++++.+    ..+.+|+++++++.||+|||+|.|.+... ....|.|+|||+
T Consensus         4 ~~l~V~Vi~a~~L~~~~~~~~~~~DPyV~v~l~g~~~~~~~~~T~~v~~~~~nP~wne~f~f~~~~~-~~~~L~~~V~D~   82 (131)
T d1qasa2           4 ERLRVRIISGQQLPKVNKNKNSIVDPKVIVEIHGVGRDTGSRQTAVITNNGFNPRWDMEFEFEVTVP-DLALVRFMVEDY   82 (131)
T ss_dssp             EEEEEEEEEEESCCCCC-----CCCEEEEEEEESSTTTCEEEECCCCSSCSSSCEEEEEEEEEESCG-GGCEEEEEEEEC
T ss_pred             EEEEEEEEEeeCCCCCCCCCCCCcCeEEEEEEccCCCCcEEEEEEEEecccCCceEEEEEEEEEEcc-hhceEEEEEEEe
Confidence            6799999999999654432212599999999943    46889999987578999999999988654 456799999999


Q ss_pred             cCCCCCCceeeeEEEeCcccccCCCCCCCceeEEEEEeCCCCCC--ccEEEEEEEEcc
Q 021710           95 KLSETPKPLVGSVKFPLAHLVDSDSSEPTQYVRKLEVLRPSGRP--QGKIRVKLVLNG  150 (308)
Q Consensus        95 ~~~~~~d~lLG~~~ipL~~L~~~~~~~~~~~~~~~~L~~~sg~~--~G~L~v~v~~~~  150 (308)
                      + ....|++||++.|+|+++..+        .+|++|++..|+.  .++|.|+|.+.+
T Consensus        83 d-~~~~d~~iG~~~i~l~~l~~g--------~~~~~L~~~~g~~~~~~~L~v~i~~~d  131 (131)
T d1qasa2          83 D-SSSKNDFIGQSTIPWNSLKQG--------YRHVHLLSKNGDQHPSATLFVKISIQD  131 (131)
T ss_dssp             C-TTTCCEEEEEEEEEGGGBCCE--------EEEEEEECTTSCEEEEEEEEEEEEEEC
T ss_pred             c-CCCCCcEEEEEEEEEeccCCC--------CEEEECCCCCcCCCCCCEEEEEEEEEC
Confidence            8 456889999999999998642        4799999888875  678889888763

>d2nq3a1 b.7.1.1 (A:13-145) E3 ubiquitin-protein ligase Itchy {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: PLC-like (P variant)
domain: E3 ubiquitin-protein ligase Itchy
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.82  E-value=3.8e-20  Score=150.13  Aligned_cols=124  Identities=22%  Similarity=0.294  Sum_probs=97.3

Q ss_pred             ccEEEEEEEEeecCCCCCCCCCCCCCcEEEEEEcCCceEEEEeecCCCCCCccccEEEEeeeCCCCCceEEEEEEeccCC
Q 021710           18 THDLEITIICAKHLKNVNWRNGGDLKPYVVFYVDPAYRLATQSDDSGSTRPVWNERFTLPITHSVRESVLTLEIFHSKLS   97 (308)
Q Consensus        18 ~~~L~VtIisAk~L~~~~~~~~~~~dPYv~v~l~~~~k~kT~v~k~gt~nP~WnE~f~f~l~~~~~~~~L~l~V~d~~~~   97 (308)
                      ..+|+|+|++|++|++.+...+  +||||++.++. .+.+|+++++ +.||+|||.|.|.+..   ...|+|+|||++ .
T Consensus         5 ~~~L~v~v~~A~~~~~~~~~~~--~dpyv~v~~~~-~~~kT~v~~~-t~nP~wne~f~f~~~~---~~~l~~~V~d~d-~   76 (133)
T d2nq3a1           5 KSQLQITVISAKLKENKKNWFG--PSPYVEVTVDG-QSKKTEKCNN-TNSPKWKQPLTVIVTP---VSKLHFRVWSHQ-T   76 (133)
T ss_dssp             CEEEEEEEEEEEECCCC--CCC--CCEEEEEEETT-EEEECCCCSS-CSSCEEEEEEEEEECT---TCEEEEEEEECC-S
T ss_pred             ceEEEEEEEEeECCCcCCCCCC--cCeEEEEEECC-eEEeeEEEEe-cccEEEcceEEEEEEe---cceeEEEEEEcc-C
Confidence            4789999999999998877664  99999999997 7899999887 8999999999999975   457999999998 4


Q ss_pred             CCCCceeeeEEEeCcccccCCCCCCCceeEEEEEeCCCCC--CccEEEEEEEEc
Q 021710           98 ETPKPLVGSVKFPLAHLVDSDSSEPTQYVRKLEVLRPSGR--PQGKIRVKLVLN  149 (308)
Q Consensus        98 ~~~d~lLG~~~ipL~~L~~~~~~~~~~~~~~~~L~~~sg~--~~G~L~v~v~~~  149 (308)
                      ..+|++||++.|+|.+++.......+....|+.|....+.  ..|+|.|.+...
T Consensus        77 ~~~d~~iG~~~i~L~~l~~~~~~~~~~~~~~l~l~~~~~~~~~~G~L~v~l~~~  130 (133)
T d2nq3a1          77 LKSDVLLGTAALDIYETLKSNNMKLEEVVVTLQLGGDKEPTETIGDLSICLDGL  130 (133)
T ss_dssp             SSCCEEEEEEEEEHHHHHHHTTTEESSEEEEEEEEESSCTTSEEEEEEEEEESE
T ss_pred             CCCCceEEEEEEEHHHhhhhcCCceeeEEEEEecCCCCCCceEEEEEEEEEeeE
Confidence            6789999999999999876433321133456666654433  368888887653

>d1rlwa_ b.7.1.1 (A:) Domain from cytosolic phospholipase A2 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: PLC-like (P variant)
domain: Domain from cytosolic phospholipase A2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.82  E-value=6.1e-20  Score=146.73  Aligned_cols=118  Identities=16%  Similarity=0.340  Sum_probs=96.5

Q ss_pred             cEEEEEEEEeecCCCCC---CCCCCCCCcEEEEEEcC--CceEEEEeecCCCCCCccccEEEEeeeCCCCCceEEEEEEe
Q 021710           19 HDLEITIICAKHLKNVN---WRNGGDLKPYVVFYVDP--AYRLATQSDDSGSTRPVWNERFTLPITHSVRESVLTLEIFH   93 (308)
Q Consensus        19 ~~L~VtIisAk~L~~~~---~~~~~~~dPYv~v~l~~--~~k~kT~v~k~gt~nP~WnE~f~f~l~~~~~~~~L~l~V~d   93 (308)
                      +.|+|+|++|+||+...   ..+  .+||||++++.+  ..+.+|+++++ +.||.|||+|.|.+... ....|.|+|||
T Consensus         3 ~~l~V~v~~a~~L~~~~~~d~~~--~~Dpyv~v~l~~~~~~~~~T~~~~~-t~nP~wne~f~f~i~~~-~~~~L~v~V~d   78 (126)
T d1rlwa_           3 HKFTVVVLRATKVTKGAFGDMLD--TPDPYVELFISTTPDSRKRTRHFNN-DINPVWNETFEFILDPN-QENVLEITLMD   78 (126)
T ss_dssp             EEEEEEEEEEESCCSCHHHHHHC--CCCEEEEEECTTSTTCCEECCCCTT-CSSCEEEEEEEEEECTT-SCCEEEEEEEE
T ss_pred             cEEEEEEEEccCCCCccccccCC--CCCcEEEEEECCcccceeEeeecCC-CccceeceeeeecccCc-ccCcEEEEEEE
Confidence            78999999999998753   234  489999999965  36789999988 89999999999999764 46689999999


Q ss_pred             ccCCCCCCceeeeEEEeCcccccCCCCCCCceeEEEEEeCCCCCCccEEEEEEEEcc
Q 021710           94 SKLSETPKPLVGSVKFPLAHLVDSDSSEPTQYVRKLEVLRPSGRPQGKIRVKLVLNG  150 (308)
Q Consensus        94 ~~~~~~~d~lLG~~~ipL~~L~~~~~~~~~~~~~~~~L~~~sg~~~G~L~v~v~~~~  150 (308)
                      ++.  ..|++||++.|+|++|..+.     ....||+|.   ...+|+|+|++++..
T Consensus        79 ~d~--~~d~~lG~~~i~L~~l~~~~-----~~~~~~~L~---~~~~g~i~~~l~~~~  125 (126)
T d1rlwa_          79 ANY--VMDETLGTATFTVSSMKVGE-----KKEVPFIFN---QVTEMVLEMSLEVAS  125 (126)
T ss_dssp             CCS--SCCEEEEEEEEEGGGSCTTC-----EEEEEEEET---TTEEEEEEEEEECCC
T ss_pred             CCC--CCCCeEEEEEEEHHHccCCC-----eEEEEEEcc---CCCeEEEEEEEEEEe
Confidence            983  47899999999999986532     456899994   334688888888754

>d1a25a_ b.7.1.2 (A:) C2 domain from protein kinase c (beta) {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: C2 domain from protein kinase c (beta)
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.77  E-value=1.1e-18  Score=140.80  Aligned_cols=106  Identities=24%  Similarity=0.364  Sum_probs=89.3

Q ss_pred             ccEEEEEEEEeecCCCCCCCCCCCCCcEEEEEEcC----CceEEEEeecCCCCCCccccEEEEeeeCCCCCceEEEEEEe
Q 021710           18 THDLEITIICAKHLKNVNWRNGGDLKPYVVFYVDP----AYRLATQSDDSGSTRPVWNERFTLPITHSVRESVLTLEIFH   93 (308)
Q Consensus        18 ~~~L~VtIisAk~L~~~~~~~~~~~dPYv~v~l~~----~~k~kT~v~k~gt~nP~WnE~f~f~l~~~~~~~~L~l~V~d   93 (308)
                      .+.|+|+|++|+||+..+..+.  +||||++++.+    ..+++|+++++ +.||+|||+|.|.+........|.|+|||
T Consensus        14 ~~~L~V~V~~a~~L~~~d~~g~--~DpYv~v~l~~~~~~~~~~kT~v~~~-t~nP~wne~f~f~v~~~~~~~~L~i~V~d   90 (132)
T d1a25a_          14 REVLIVVVRDAKNLVPMDPNGL--SDPYVKLKLIPDPKSESKQKTKTIKC-SLNPEWNETFRFQLKESDKDRRLSVEIWD   90 (132)
T ss_dssp             SSEEEEEEEEEESCCCCSTTSC--CCEEEEEEEESCTTCSSCEECCCCSS-CSSCEEEEEEEEECCSGGGGCEEEEEEEE
T ss_pred             CCEEEEEEEeeeCCCCCCCCCC--cCeEEEEEEccCCCCccccEEeeecC-CCCCccceEEEEEeEccccCCEEeEEEEe
Confidence            4789999999999998887664  99999999943    35889999998 89999999999998764345689999999


Q ss_pred             ccCCCCCCceeeeEEEeCcccccCCCCCCCceeEEEEEeC
Q 021710           94 SKLSETPKPLVGSVKFPLAHLVDSDSSEPTQYVRKLEVLR  133 (308)
Q Consensus        94 ~~~~~~~d~lLG~~~ipL~~L~~~~~~~~~~~~~~~~L~~  133 (308)
                      ++. ..+|++||.+.|+|.+|...      ....||+|..
T Consensus        91 ~d~-~~~d~~iG~~~i~l~~l~~~------~~~~W~~L~~  123 (132)
T d1a25a_          91 WDL-TSRNDFMGSLSFGISELQKA------GVDGWFKLLS  123 (132)
T ss_dssp             CCS-SSCCEEEEEEEEEHHHHTTC------CEEEEEECBC
T ss_pred             cCC-CCCCcEeEEEEEeHHHcCCC------CCCeEEECCC
Confidence            983 67889999999999998643      2357999975

>d1dqva1 b.7.1.2 (A:295-424) Synaptotagmin III {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: Synaptotagmin III
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.75  E-value=2.3e-18  Score=138.65  Aligned_cols=110  Identities=17%  Similarity=0.285  Sum_probs=88.2

Q ss_pred             cccEEEEEEEEeecCCCCCCCCCCCCCcEEEEEEcC--CceEEEEeecCCCCCCccccEEEEeeeCC-CCCceEEEEEEe
Q 021710           17 ITHDLEITIICAKHLKNVNWRNGGDLKPYVVFYVDP--AYRLATQSDDSGSTRPVWNERFTLPITHS-VRESVLTLEIFH   93 (308)
Q Consensus        17 ~~~~L~VtIisAk~L~~~~~~~~~~~dPYv~v~l~~--~~k~kT~v~k~gt~nP~WnE~f~f~l~~~-~~~~~L~l~V~d   93 (308)
                      ..++|+|+|++|+||+..+..+.  +||||++++.+  ..+++|+++++ +.||+|||+|.|.+... +....|.|+|||
T Consensus        16 ~~~~L~V~V~~a~~L~~~~~~g~--~dpyv~v~l~~~~~~~~kT~v~~~-t~~P~wne~f~f~v~~~~~~~~~L~v~V~d   92 (130)
T d1dqva1          16 GSDQLVVRILQALDLPAKDSNGF--SDPYVKIYLLPDRKKKFQTKVHRK-TLNPIFNETFQFSVPLAELAQRKLHFSVYD   92 (130)
T ss_dssp             SSCEEEEEEEEEECCCCCSTTSC--CCEEEEEECTTSTTSCEECCCCCS-CSSCEEEEEEEEECCGGGGSSCCCEEEEEE
T ss_pred             CCCEEEEEEEeeeCCccccCCCC--cceEEEEEEccCCCceEeceeEcC-CCCeeeeeEEEEEEchHHcCCCeEEEEEEE
Confidence            45899999999999998887664  99999999953  46799999998 89999999999998653 345679999999


Q ss_pred             ccCCCCCCceeeeEEEeCcccccCCCCCCCceeEEEEEeC
Q 021710           94 SKLSETPKPLVGSVKFPLAHLVDSDSSEPTQYVRKLEVLR  133 (308)
Q Consensus        94 ~~~~~~~d~lLG~~~ipL~~L~~~~~~~~~~~~~~~~L~~  133 (308)
                      ++ ...+|++||++.|++...+.....   ....|++|.+
T Consensus        93 ~~-~~~~d~~iG~~~i~~~~~l~~~~~---~~~~W~~L~~  128 (130)
T d1dqva1          93 FD-RFSRHDLIGQVVLDNLLELAEQPP---DRPLWRDILE  128 (130)
T ss_dssp             CC-SSSCCCEEEEEECCCTTGGGSSCS---SCCCCEECBC
T ss_pred             cC-CCCCCceEEEEEECchhhhhcCCC---CCcEEEeccc
Confidence            98 467899999999987654433222   2347999974

>d2cjta1 b.7.1.1 (A:1-128) Unc-13 homolog A {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: PLC-like (P variant)
domain: Unc-13 homolog A
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.75  E-value=2.4e-18  Score=138.72  Aligned_cols=101  Identities=22%  Similarity=0.294  Sum_probs=83.8

Q ss_pred             cEEEEEEEEeecCCCCCCCCCCCCCcEEEEEEcCCceEEEEeecCCCCCCccccEEEEeeeCCCCCceEEEEEEeccCCC
Q 021710           19 HDLEITIICAKHLKNVNWRNGGDLKPYVVFYVDPAYRLATQSDDSGSTRPVWNERFTLPITHSVRESVLTLEIFHSKLSE   98 (308)
Q Consensus        19 ~~L~VtIisAk~L~~~~~~~~~~~dPYv~v~l~~~~k~kT~v~k~gt~nP~WnE~f~f~l~~~~~~~~L~l~V~d~~~~~   98 (308)
                      ..|+|+|++|++|+..+     ..||||++.+++ .+.+|+++++  .||+|||+|.|.+...  ...|.|+|||++.  
T Consensus         2 ~~L~V~v~~a~~l~~~~-----~~dpYv~l~~~~-~k~~T~~~k~--~nP~Wne~f~f~v~~~--~~~L~v~V~d~~~--   69 (128)
T d2cjta1           2 SLLCVGVKKAKFDGAQE-----KFNTYVTLKVQN-VKSTTIAVRG--SQPSWEQDFMFEINRL--DLGLTVEVWNKGL--   69 (128)
T ss_dssp             EEEEEEEEEEECSSCGG-----GCEEEEEEEETT-EEEECCCEES--SSCEEEEEEEEEECCC--SSEEEEEEEECCS--
T ss_pred             eEEEEEEEEEECCCCCC-----CcCeEEEEEeCC-EEEEEEEecC--CCCeEEEEEEEeeccc--cceEEEEEEeCCC--
Confidence            57999999999999865     389999999986 7899998864  5999999999999874  5679999999983  


Q ss_pred             CCCceeeeEEEeCcccccCCCCCCCceeEEEEEeCC
Q 021710           99 TPKPLVGSVKFPLAHLVDSDSSEPTQYVRKLEVLRP  134 (308)
Q Consensus        99 ~~d~lLG~~~ipL~~L~~~~~~~~~~~~~~~~L~~~  134 (308)
                      ..|++||++.|+|++|......   ....||.|..+
T Consensus        70 ~~d~~lG~~~I~L~~l~~~~~~---~~~~W~~L~~~  102 (128)
T d2cjta1          70 IWDTMVGTVWIPLRTIRQSNEE---GPGEWLTLDSQ  102 (128)
T ss_dssp             SCEEEEEEEEEEGGGSCBCSSC---CCCEEEECBC-
T ss_pred             cCCcceEEEEEEehhhccCCCC---CCCeeEECCcc
Confidence            4689999999999999765432   23579999654

>d1rsya_ b.7.1.2 (A:) Synaptogamin I {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: Synaptogamin I
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.74  E-value=5.2e-18  Score=138.59  Aligned_cols=108  Identities=19%  Similarity=0.341  Sum_probs=89.3

Q ss_pred             cccEEEEEEEEeecCCCCCCCCCCCCCcEEEEEEcC--CceEEEEeecCCCCCCccccEEEEeeeCC-CCCceEEEEEEe
Q 021710           17 ITHDLEITIICAKHLKNVNWRNGGDLKPYVVFYVDP--AYRLATQSDDSGSTRPVWNERFTLPITHS-VRESVLTLEIFH   93 (308)
Q Consensus        17 ~~~~L~VtIisAk~L~~~~~~~~~~~dPYv~v~l~~--~~k~kT~v~k~gt~nP~WnE~f~f~l~~~-~~~~~L~l~V~d   93 (308)
                      ....|+|+|++|+||+..+..+  .+||||++++.+  ..+.+|+++++ +.||+|||+|.|.+... +....|.|+|||
T Consensus        32 ~~~~L~V~V~~a~~L~~~~~~g--~~dpyV~v~l~~~~~~~~kT~~~~~-t~~P~wne~f~f~i~~~~l~~~~L~i~V~d  108 (143)
T d1rsya_          32 QNNQLLVGIIQAAELPALDMGG--TSDPYVKVFLLPDKKKKFETKVHRK-TLNPVFNEQFTFKVPYSELGGKTLVMAVYD  108 (143)
T ss_dssp             TTTEEEEEEEEEESCCCCSTTS--CCCEEEEEEEETTCCSCEECCCCTT-CSSCEEEEEEEECCCHHHHTTCEEEEEEEE
T ss_pred             CCCEEEEEEEEccCCCCCCCCC--CCCeEEEEEEcCCCCeeEEEEEecc-ccCcceeeeeEEEEEeeccCCceEEEEEEE
Confidence            3578999999999999888765  499999999943  46789999988 89999999999998642 346789999999


Q ss_pred             ccCCCCCCceeeeEEEeCcccccCCCCCCCceeEEEEEeC
Q 021710           94 SKLSETPKPLVGSVKFPLAHLVDSDSSEPTQYVRKLEVLR  133 (308)
Q Consensus        94 ~~~~~~~d~lLG~~~ipL~~L~~~~~~~~~~~~~~~~L~~  133 (308)
                      ++ ...++++||++.|+|.++..+.     ....||+|..
T Consensus       109 ~d-~~~~~~~iG~~~i~L~~~~~~~-----~~~~W~~L~s  142 (143)
T d1rsya_         109 FD-RFSKHDIIGEFKVPMNTVDFGH-----VTEEWRDLQS  142 (143)
T ss_dssp             CC-SSSCCEEEEEEEEEGGGCCCSS-----CEEEEEECBC
T ss_pred             cC-CCCCCcEEEEEEEEchhccCCC-----CCccEEeCCC
Confidence            98 3568889999999999986543     3468999963

>d1rh8a_ b.7.1.2 (A:) Piccolo {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: Piccolo
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.71  E-value=1.9e-18  Score=140.54  Aligned_cols=109  Identities=19%  Similarity=0.302  Sum_probs=88.5

Q ss_pred             ccEEEEEEEEeecCCCCCCCCCCCCCcEEEEEEcCC-------------ceEEEEeecCCCCCCccccEEEEeeeC--CC
Q 021710           18 THDLEITIICAKHLKNVNWRNGGDLKPYVVFYVDPA-------------YRLATQSDDSGSTRPVWNERFTLPITH--SV   82 (308)
Q Consensus        18 ~~~L~VtIisAk~L~~~~~~~~~~~dPYv~v~l~~~-------------~k~kT~v~k~gt~nP~WnE~f~f~l~~--~~   82 (308)
                      .+.|+|+|++|+||...+..+.  +||||++++.+.             .+++|+++++ +.||+|||+|.|.+..  .+
T Consensus        17 ~~~L~V~V~~A~~L~~~d~~g~--~DpyV~v~l~~~~~~~~~~~~~~~~~~~kT~v~~~-t~nP~wne~f~f~~~~~~~~   93 (142)
T d1rh8a_          17 LGNLIIHILQARNLVPRDNNGY--SDPFVKVYLLPGRGQVMVVQNASAEYKRRTKYVQK-SLNPEWNQTVIYKSISMEQL   93 (142)
T ss_dssp             TTEEEEEEEEEESCCCCSSSSC--SCCEEEEEETTSSCCCEECCCCCHHHHTTTTTTHH-HHSCEEEEEEEECSCCHHHH
T ss_pred             CCEEEEEEEEeECCCCcCCCCC--CCcCEEEEEecCcccccccccCCCceeeeccCCcC-CCCceeEEEEEEeeeccccc
Confidence            4789999999999999887764  999999999431             2457999988 8999999999998432  23


Q ss_pred             CCceEEEEEEeccCCCCCCceeeeEEEeCcccccCCCCCCCceeEEEEEeCCC
Q 021710           83 RESVLTLEIFHSKLSETPKPLVGSVKFPLAHLVDSDSSEPTQYVRKLEVLRPS  135 (308)
Q Consensus        83 ~~~~L~l~V~d~~~~~~~d~lLG~~~ipL~~L~~~~~~~~~~~~~~~~L~~~s  135 (308)
                      ....|.|+|||++ ...++++||++.|+|.++......     ..||+|...+
T Consensus        94 ~~~~L~i~V~d~d-~~~~~~~lG~~~i~L~~l~~~~~~-----~~W~~L~~~~  140 (142)
T d1rh8a_          94 MKKTLEVTVWDYD-RFSSNDFLGEVLIDLSSTSHLDNT-----PRWYPLKEQT  140 (142)
T ss_dssp             TTCEEEEEEEEEC-SSSCEEEEEEEEEETTSCGGGTTC-----CEEEECBCCC
T ss_pred             CCCEEEEEEEEec-CCCCCeeeEEEEEEhHHcCCCCCc-----eEEEECcCcC
Confidence            4668999999998 356789999999999999765433     5899998654

>d1ugka_ b.7.1.2 (A:) Synaptotagmin IV {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: Synaptotagmin IV
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.70  E-value=8.2e-17  Score=130.74  Aligned_cols=97  Identities=20%  Similarity=0.308  Sum_probs=80.9

Q ss_pred             cccEEEEEEEEeecCCCCCCCCCCCCCcEEEEEEcC--CceEEEEeecCCCCCCccccEEEEe-eeC-CCCCceEEEEEE
Q 021710           17 ITHDLEITIICAKHLKNVNWRNGGDLKPYVVFYVDP--AYRLATQSDDSGSTRPVWNERFTLP-ITH-SVRESVLTLEIF   92 (308)
Q Consensus        17 ~~~~L~VtIisAk~L~~~~~~~~~~~dPYv~v~l~~--~~k~kT~v~k~gt~nP~WnE~f~f~-l~~-~~~~~~L~l~V~   92 (308)
                      ....|+|+|++|+||+..+..+. .+||||++++.+  ..+++|+++++ +.||+|||+|.|. +.. .+....|.|+||
T Consensus        20 ~~~~L~V~V~~a~~L~~~d~~~~-~~dpyV~v~l~~~~~~~~kT~v~~~-t~nP~wne~f~f~~~~~~~l~~~~L~~~V~   97 (138)
T d1ugka_          20 ERKAFVVNIKEARGLPAMDEQSM-TSDPYIKMTILPEKKHKVKTRVLRK-TLDPAFDETFTFYGIPYTQIQELALHFTIL   97 (138)
T ss_dssp             GGTEEEEEEEEEESCCCCBTTTT-BCEEEEEEEEETTTCSEEECCCCSS-CSSCEEEEEEEEECCCSTTGGGCEEEEEEE
T ss_pred             CCCEEEEEEEEecCCCCCCCCCC-ccceEEEEEEcCCCCEeEeCeeEeC-CCCCceeeEEEEeeeCHHHcccceEEEEEE
Confidence            35789999999999998876654 579999999943  46789999988 8999999999997 443 234568999999


Q ss_pred             eccCCCCCCceeeeEEEeCccccc
Q 021710           93 HSKLSETPKPLVGSVKFPLAHLVD  116 (308)
Q Consensus        93 d~~~~~~~d~lLG~~~ipL~~L~~  116 (308)
                      |.+ ...++++||++.|+|+++..
T Consensus        98 d~d-~~~~~~~iG~~~i~L~~~~~  120 (138)
T d1ugka_          98 SFD-RFSRDDIIGEVLIPLSGIEL  120 (138)
T ss_dssp             EEC-SSCCCCCCEEEEEECTTCCC
T ss_pred             ECC-CCCCCcEEEEEEEEcccccC
Confidence            988 46689999999999999854

>d2bwqa1 b.7.1.2 (A:729-853) Regulating synaptic membrane exocytosis protein, rim2 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: Regulating synaptic membrane exocytosis protein, rim2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.69  E-value=8.5e-17  Score=128.22  Aligned_cols=107  Identities=22%  Similarity=0.384  Sum_probs=82.6

Q ss_pred             cccEEEEEEEEeecCCCCCCCCCCCCCcEEEEEEcC----CceEEEEeecCCCCCCccccEEEEe-eeCC-CCCceEEEE
Q 021710           17 ITHDLEITIICAKHLKNVNWRNGGDLKPYVVFYVDP----AYRLATQSDDSGSTRPVWNERFTLP-ITHS-VRESVLTLE   90 (308)
Q Consensus        17 ~~~~L~VtIisAk~L~~~~~~~~~~~dPYv~v~l~~----~~k~kT~v~k~gt~nP~WnE~f~f~-l~~~-~~~~~L~l~   90 (308)
                      ....|+|+|++|+||...+..+  .+||||++++.+    ..+++|+++++ +.||+|||+|.|. +... +....|.|+
T Consensus        12 ~~~~L~V~V~~a~~L~~~~~~~--~~dpyVkv~l~~~~~~~~~~kT~~~~~-t~~P~wne~f~f~~~~~~~l~~~~L~i~   88 (125)
T d2bwqa1          12 VGHQLIVTILGAKDLPSREDGR--PRNPYVKIYFLPDRSDKNKRRTKTVKK-TLEPKWNQTFIYSPVHRREFRERMLEIT   88 (125)
T ss_dssp             TTTEEEEEEEEEESCCCCTTSC--CBCEEEEEEEESSCSGGGEEECCCCSS-BSSCEEEEEEEECSCCGGGGGGCEEEEE
T ss_pred             CCCEEEEEEEEeECCCCcCCCC--CCCEEEEEEEeCCCCCccccccCEEcC-CCCCEEccEEEEeeeChhhcCCCEEEEE
Confidence            3579999999999999877655  499999999943    35789999998 8999999999997 4432 345689999


Q ss_pred             EEeccCC-CCCCceeeeEEEeCcccccCCCCCCCceeEEEEEe
Q 021710           91 IFHSKLS-ETPKPLVGSVKFPLAHLVDSDSSEPTQYVRKLEVL  132 (308)
Q Consensus        91 V~d~~~~-~~~d~lLG~~~ipL~~L~~~~~~~~~~~~~~~~L~  132 (308)
                      |||.+.. ..++++||++.|+|+++....      ...||+|+
T Consensus        89 v~d~~~~~~~~~~~iG~~~i~l~~~~~~~------~~~Wy~L~  125 (125)
T d2bwqa1          89 LWDQARVREEESEFLGEILIELETALLDD------EPHWYKLQ  125 (125)
T ss_dssp             EEEC-------CEEEEEEEEEGGGCCCSS------CEEEEECC
T ss_pred             EEECCCCCCCCCeeEEEEEEEchhcCCCC------CCEEEeCc
Confidence            9998732 234569999999999987542      24799983

>d1wfma_ b.7.1.2 (A:) Synaptotagmin XIII {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: Synaptotagmin XIII
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.67  E-value=2.4e-16  Score=127.94  Aligned_cols=105  Identities=16%  Similarity=0.159  Sum_probs=86.0

Q ss_pred             cccEEEEEEEEeecCCCCCCCCCCCCCcEEEEEEcCC---ceEEEEeecCCCCCCccccEEEEeeeCC-CCCceEEEEEE
Q 021710           17 ITHDLEITIICAKHLKNVNWRNGGDLKPYVVFYVDPA---YRLATQSDDSGSTRPVWNERFTLPITHS-VRESVLTLEIF   92 (308)
Q Consensus        17 ~~~~L~VtIisAk~L~~~~~~~~~~~dPYv~v~l~~~---~k~kT~v~k~gt~nP~WnE~f~f~l~~~-~~~~~L~l~V~   92 (308)
                      ....|+|+|++|++|..   .+  .+||||++.+.+.   .+++|+++++ +.||+|||+|.|.+... +....|.|+||
T Consensus        24 ~~~~L~V~v~~a~~L~~---~g--~~dpyVkv~l~~~~~~~~~kT~v~~~-~~~P~wne~f~f~v~~~~l~~~~L~~~V~   97 (138)
T d1wfma_          24 QKAELFVTRLEAVTSNH---DG--GCDCYVQGSVANRTGSVEAQTALKKR-QLHTTWEEGLVLPLAEEELPTATLTLTLR   97 (138)
T ss_dssp             TTTEEEEEEEEEECCCC---SS--CCCEEEEEEEEETTEEEEEECCCCCC-CSSEECSSCEEEECCTTSSTTCEEEEEEE
T ss_pred             CCCEEEEEEEEcCCCCC---CC--CcCcEEEEEECCCCCccceeeeEECC-CCCceEeeeEEEEeeehhccceEEEEEEe
Confidence            35799999999999953   23  4899999999642   3678999988 89999999999998753 45678999999


Q ss_pred             eccCCCCCCceeeeEEEeCcccccCCCCCCCceeEEEEEeC
Q 021710           93 HSKLSETPKPLVGSVKFPLAHLVDSDSSEPTQYVRKLEVLR  133 (308)
Q Consensus        93 d~~~~~~~d~lLG~~~ipL~~L~~~~~~~~~~~~~~~~L~~  133 (308)
                      |++ ...++++||++.|+|.++.....     ...|+.|+.
T Consensus        98 d~~-~~~~~~~iG~~~i~L~~l~~~~~-----~~~W~~L~~  132 (138)
T d1wfma_          98 TCD-RFSRHSVAGELRLGLDGTSVPLG-----AAQWGELKT  132 (138)
T ss_dssp             ECC-SSCTTSCSEEEEEESSSSSSCTT-----CCEEEECCC
T ss_pred             eec-ccccceeeeEEEEEhHHccCCCC-----ceEeEeCCC
Confidence            998 46788999999999999865433     358999974

>d2cm5a1 b.7.1.2 (A:541-677) C2b-domain of rabphilin {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: C2b-domain of rabphilin
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.66  E-value=3.7e-16  Score=125.97  Aligned_cols=94  Identities=20%  Similarity=0.364  Sum_probs=79.4

Q ss_pred             cccEEEEEEEEeecCCCCCCCCCCCCCcEEEEEEcC----CceEEEEeecCCCCCCccccEEEEeeeCC-CCCceEEEEE
Q 021710           17 ITHDLEITIICAKHLKNVNWRNGGDLKPYVVFYVDP----AYRLATQSDDSGSTRPVWNERFTLPITHS-VRESVLTLEI   91 (308)
Q Consensus        17 ~~~~L~VtIisAk~L~~~~~~~~~~~dPYv~v~l~~----~~k~kT~v~k~gt~nP~WnE~f~f~l~~~-~~~~~L~l~V   91 (308)
                      ..+.|+|+|++|+||...+..+  .+||||++++.+    ..+++|+++++ +.||+|||+|.|.+... +....|.|.|
T Consensus        13 ~~~~L~V~v~~a~nL~~~~~~~--~~dpyv~v~l~~~~~~~~~~kT~v~~~-t~~P~wne~f~f~v~~~~l~~~~l~v~v   89 (137)
T d2cm5a1          13 QQGGLIVGIIRCVHLAAMDANG--YSDPFVKLWLKPDMGKKAKHKTQIKKK-TLNPEFNEEFFYDIKHSDLAKKSLDISV   89 (137)
T ss_dssp             TTTEEEEEEEEEESCCCCSTTS--CCCEEEEEEEETC---CCEEECCCCCS-CSSCEEEEEEEEECCGGGGGGCEEEEEE
T ss_pred             CCCEEEEEEEEEECCCCCCCCC--CcCeEEEEEEEcCCccceeecCEeEcC-CCCCccceEEEEEeEHHHccccEEEEEe
Confidence            4589999999999998877665  499999999843    35789999998 89999999999998753 3467899999


Q ss_pred             EeccCCCCCCceeeeEEEeCccc
Q 021710           92 FHSKLSETPKPLVGSVKFPLAHL  114 (308)
Q Consensus        92 ~d~~~~~~~d~lLG~~~ipL~~L  114 (308)
                      ||.+ ...++++||++.|+|.++
T Consensus        90 ~~~~-~~~~~~~iG~~~i~l~~~  111 (137)
T d2cm5a1          90 WDYD-IGKSNDYIGGCQLGISAK  111 (137)
T ss_dssp             EECC-SSSCCEEEEEEEEETTCC
T ss_pred             eeCC-CCCCCCEEEEEEeCcccc
Confidence            9988 467889999999999764

>d1w15a_ b.7.1.2 (A:) Synaptotagmin IV {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: Synaptotagmin IV
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.65  E-value=3.4e-16  Score=126.82  Aligned_cols=93  Identities=18%  Similarity=0.300  Sum_probs=73.5

Q ss_pred             ccEEEEEEEEeecCCCCCCCCCCCCCcEEEEEEcC----CceEEEEeecCCCCCCccccEEEEeeeCC-CCCceEEEEEE
Q 021710           18 THDLEITIICAKHLKNVNWRNGGDLKPYVVFYVDP----AYRLATQSDDSGSTRPVWNERFTLPITHS-VRESVLTLEIF   92 (308)
Q Consensus        18 ~~~L~VtIisAk~L~~~~~~~~~~~dPYv~v~l~~----~~k~kT~v~k~gt~nP~WnE~f~f~l~~~-~~~~~L~l~V~   92 (308)
                      .+.|.|+|++|+||...+..+  .+||||++.+.+    ..+.+|+++++ +.||.|||+|.|.+... +....|.|.||
T Consensus        14 ~~~L~V~v~~a~~L~~~~~~~--~~dpyvkv~l~~~~~~~~~~kT~~~~~-t~~P~wne~f~F~v~~~~~~~~~l~i~v~   90 (138)
T d1w15a_          14 TNTLTVVVLKARHLPKSDVSG--LSDPYVKVNLYHAKKRISKKKTHVKKC-TPNAVFNELFVFDIPCESLEEISVEFLVL   90 (138)
T ss_dssp             TTEEEEEEEEEESCC--------CCCEEEEEEEEETTEEEEEEECCCCCS-CSSEEEEEEEEEECCSSSSTTEEEEEEEE
T ss_pred             CCEEEEEEEEeECCCCCCCCC--CcCEEEEEEEeCCcccCccccceeECC-CCCCeECcEEEEEecHHHhCccEEEEEEE
Confidence            478999999999999887665  489999999843    24668999988 89999999999998653 45667999999


Q ss_pred             eccCCCCCCceeeeEEEeCccc
Q 021710           93 HSKLSETPKPLVGSVKFPLAHL  114 (308)
Q Consensus        93 d~~~~~~~d~lLG~~~ipL~~L  114 (308)
                      |.+ ...++++||++.|.|...
T Consensus        91 d~~-~~~~~~~iG~~~i~l~~~  111 (138)
T d1w15a_          91 DSE-RGSRNEVIGRLVLGATAE  111 (138)
T ss_dssp             ECC-TTSCCEEEEEEEESTTCC
T ss_pred             eCC-CCCCCCEEEEEEEcchhC
Confidence            988 466889999999998764

>d1uowa_ b.7.1.2 (A:) Synaptogamin I {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: Synaptogamin I
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.64  E-value=5.5e-16  Score=128.46  Aligned_cols=109  Identities=15%  Similarity=0.227  Sum_probs=86.7

Q ss_pred             ccEEEEEEEEeecCCCCCCCCCCCCCcEEEEEEcCC----ceEEEEeecCCCCCCccccEEEEeeeCC-CCCceEEEEEE
Q 021710           18 THDLEITIICAKHLKNVNWRNGGDLKPYVVFYVDPA----YRLATQSDDSGSTRPVWNERFTLPITHS-VRESVLTLEIF   92 (308)
Q Consensus        18 ~~~L~VtIisAk~L~~~~~~~~~~~dPYv~v~l~~~----~k~kT~v~k~gt~nP~WnE~f~f~l~~~-~~~~~L~l~V~   92 (308)
                      .+.|.|+|++|+||+..+..+  .+||||++.+.+.    .+.+|++.++ +.||+|||+|.|.+... +....|.|+||
T Consensus        24 ~~~L~V~V~~a~~L~~~~~~~--~~dpyV~v~l~~~~~~~~~~kT~v~~~-t~nP~wne~f~F~v~~~~l~~~~l~i~v~  100 (157)
T d1uowa_          24 AGKLTVVILEAKNLKKMDVGG--LSDPYVKIHLMQNGKRLKKKKTTIKKN-TLNPYYNESFSFEVPFEQIQKVQVVVTVL  100 (157)
T ss_dssp             TTEEEEEEEEEESCCCCSTTS--CCCEEEEEEEEETTEEEEEEECCCCCS-CSSCEEEEEEEEECCGGGGGGCEEEEEEE
T ss_pred             CCEEEEEEEEEEEcccccCCC--CCCeeEEEEEecCCccccceecccccC-CCCcccCCeEEEEecHHHcCccEEEEEEc
Confidence            479999999999999887665  4999999998542    3568999887 89999999999998753 34568999999


Q ss_pred             eccCCCCCCceeeeEEEeCccc----------ccCCCCCCCceeEEEEEeC
Q 021710           93 HSKLSETPKPLVGSVKFPLAHL----------VDSDSSEPTQYVRKLEVLR  133 (308)
Q Consensus        93 d~~~~~~~d~lLG~~~ipL~~L----------~~~~~~~~~~~~~~~~L~~  133 (308)
                      |.+ ...++++||++.|+|..+          +.....   ...+|+.|+.
T Consensus       101 d~~-~~~~~~~iG~~~i~l~~~~~~~~hW~~~~~~~~~---~v~~Wh~L~~  147 (157)
T d1uowa_         101 DYD-KIGKNDAIGKVFVGYNSTGAELRHWSDMLANPRR---PIAQWHTLQV  147 (157)
T ss_dssp             ECC-SSSCCCEEEEEEEETTCCHHHHHHHHHHHHSTTC---CEEEEEECBC
T ss_pred             ccC-CCCCCceeEEEEEecccCChhHHHHHHHHhCCCC---ceeEeEeCCC
Confidence            998 466889999999999663          222221   3468999964

>d1bdya_ b.7.1.1 (A:) Domain from protein kinase C delta {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: PLC-like (P variant)
domain: Domain from protein kinase C delta
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.64  E-value=3.4e-16  Score=124.99  Aligned_cols=111  Identities=12%  Similarity=0.185  Sum_probs=83.4

Q ss_pred             EEEEEEEeecCCCCCCCCCCCCCcEEEEEEcC----CceEEEEeecCCCCCCccccEEEEeeeCCCCCceEEEEEEeccC
Q 021710           21 LEITIICAKHLKNVNWRNGGDLKPYVVFYVDP----AYRLATQSDDSGSTRPVWNERFTLPITHSVRESVLTLEIFHSKL   96 (308)
Q Consensus        21 L~VtIisAk~L~~~~~~~~~~~dPYv~v~l~~----~~k~kT~v~k~gt~nP~WnE~f~f~l~~~~~~~~L~l~V~d~~~   96 (308)
                      +.|.++.+..++..   ++ .+||||+|.++.    ..+.+|++.++ |+||+|||+|.|.+.+   ...|.|.|||++ 
T Consensus         7 ~~~~~~~~~~~~~~---~~-~~dPY~~v~l~~~~~~~~~~~t~~~kk-T~nP~WnE~F~~~v~~---~~~l~i~V~d~d-   77 (123)
T d1bdya_           7 ISFNSYELGSLQAE---DD-ASQPFCAVKMKEALTTDRGKTLVQKKP-TMYPEWKSTFDAHIYE---GRVIQIVLMRAA-   77 (123)
T ss_dssp             EEEEEEECCTTCCC---CC-SCCCEEEEEEEEECCGGGTTBEEECSC-CBCCCTTCEEEEECCT---TCEEEEEEEEET-
T ss_pred             EEEEEeecccCCCC---CC-CCCCEEEEEEcCccccccceEEEEeCC-CCCcccceEEEEEEcc---ccEEEEEEEEcc-
Confidence            44444544444433   33 699999999964    23467888888 9999999999999975   468999999976 


Q ss_pred             CCCCCceeeeEEEeCcccccCCCCCCCceeEEEEEeCCCCCCccEEEEEEEEc
Q 021710           97 SETPKPLVGSVKFPLAHLVDSDSSEPTQYVRKLEVLRPSGRPQGKIRVKLVLN  149 (308)
Q Consensus        97 ~~~~d~lLG~~~ipL~~L~~~~~~~~~~~~~~~~L~~~sg~~~G~L~v~v~~~  149 (308)
                          ++++|.+.|.+.+|.......+.....|+.|.     ++|+|+++++|-
T Consensus        78 ----d~~~g~~~i~l~~l~~~~~~~~~~~~~W~~L~-----~~Gkl~l~v~~f  121 (123)
T d1bdya_          78 ----EDPMSEVTVGVSVLAERCKKNNGKAEFWLDLQ-----PQAKVLMCVQYF  121 (123)
T ss_dssp             ----TEEEEEEEEEHHHHHHHHHTTTTEEEEEEECB-----SSCEEEEEEEEE
T ss_pred             ----ccccCccEEehhheeeccccCCCcccEEEeCC-----CCEEEEEEEEEe
Confidence                67999999999998653222222557899983     689999999985

>d2zkmx2 b.7.1.1 (X:678-799) Phospholipase C-beta-2 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: PLC-like (P variant)
domain: Phospholipase C-beta-2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.63  E-value=2.5e-15  Score=119.70  Aligned_cols=112  Identities=21%  Similarity=0.321  Sum_probs=85.2

Q ss_pred             EEEEEEEEeecCCCCCCCCCCCCCcEEEEEEcC-----CceEEEEee-cCCCCCCccccE-EEEeeeCCCCCceEEEEEE
Q 021710           20 DLEITIICAKHLKNVNWRNGGDLKPYVVFYVDP-----AYRLATQSD-DSGSTRPVWNER-FTLPITHSVRESVLTLEIF   92 (308)
Q Consensus        20 ~L~VtIisAk~L~~~~~~~~~~~dPYv~v~l~~-----~~k~kT~v~-k~gt~nP~WnE~-f~f~l~~~~~~~~L~l~V~   92 (308)
                      +|+|+|++|++|...      ..||||+|.+.+     ..+.+|+++ ++++.||+|||+ |.|......+...|.|.||
T Consensus         2 tl~V~Visaq~L~~~------~~dPyV~V~l~g~~~D~~~~~~t~~~~~~n~~nP~wne~~~~~~~~~~~~l~~L~f~V~   75 (122)
T d2zkmx2           2 TLSITVISGQFLSER------SVRTYVEVELFGLPGDPKRRYRTKLSPSTNSINPVWKEEPFVFEKILMPELASLRVAVM   75 (122)
T ss_dssp             EEEEEEEEEESCCSS------CCCEEEEEEEECCTTSCCCCEECCCCSSSCCSSCBCCCCCEEEEEESSGGGCEEEEEEE
T ss_pred             EEEEEEEEeeCCCCC------CCCcEEEEEEECcCCCCCccEEEEEEEeCCeecceEcccEeEEEecCCCcccEEEEEEE
Confidence            689999999999753      389999999842     345555554 455899999986 4443222224468999999


Q ss_pred             eccCCCCCCceeeeEEEeCcccccCCCCCCCceeEEEEEeCCCCCC--ccEEEEEEEEcc
Q 021710           93 HSKLSETPKPLVGSVKFPLAHLVDSDSSEPTQYVRKLEVLRPSGRP--QGKIRVKLVLNG  150 (308)
Q Consensus        93 d~~~~~~~d~lLG~~~ipL~~L~~~~~~~~~~~~~~~~L~~~sg~~--~G~L~v~v~~~~  150 (308)
                      |++     +++||++.|||+.|..+        .++++|++..|++  ..+|.|+|.+++
T Consensus        76 D~d-----~~~lG~~~ipl~~l~~G--------yR~vpL~~~~g~~l~~~~L~v~i~~~~  122 (122)
T d2zkmx2          76 EEG-----NKFLGHRIIPINALNSG--------YHHLCLHSESNMPLTMPALFIFLEMKD  122 (122)
T ss_dssp             ETT-----TEEEEEEEEEGGGBCCE--------EEEEEEECTTCCEEEEEEEEEEEEEEC
T ss_pred             CCC-----CCEEEEEEEEcccCcCC--------ceEEEccCCCcCCCCCceEEEEEEEEC
Confidence            975     68999999999998653        5889999988885  678888888764

>d1dqva2 b.7.1.2 (A:425-569) Synaptotagmin III {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: Synaptotagmin III
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.55  E-value=8.9e-16  Score=125.27  Aligned_cols=95  Identities=18%  Similarity=0.224  Sum_probs=79.4

Q ss_pred             cccEEEEEEEEeecCCCCCCCCCCCCCcEEEEEEcC----CceEEEEeecCCCCCCccccEEEEeeeCC-CCCceEEEEE
Q 021710           17 ITHDLEITIICAKHLKNVNWRNGGDLKPYVVFYVDP----AYRLATQSDDSGSTRPVWNERFTLPITHS-VRESVLTLEI   91 (308)
Q Consensus        17 ~~~~L~VtIisAk~L~~~~~~~~~~~dPYv~v~l~~----~~k~kT~v~k~gt~nP~WnE~f~f~l~~~-~~~~~L~l~V   91 (308)
                      ..+.|+|+|++|+||...+..+.  +||||++.+.+    ..+.+|+++++ +.||+|||+|.|.+... +....|.|.|
T Consensus        18 ~~~~L~V~V~~a~nL~~~~~~~~--~dpyv~v~l~~~~~~~~~~kT~~~~~-t~~P~wne~f~F~v~~~~~~~~~l~v~v   94 (145)
T d1dqva2          18 TAGLLTVTIIKASNLKAMDLTGF--SDPYVKASLISEGRRLKKRKTSIKKN-TLNPTYNEALVFDVAPESVENVGLSIAV   94 (145)
T ss_dssp             TTTEEEEEEEEEESCCCCSSSSC--CCEEEEECCCTTCCTTSCEECCCCCS-CSSCEEEECCCCCCCSGGGGSCCCCCEE
T ss_pred             CCCEEEEEEEEEeCCCCcCCCCC--cCceEEEEEccCCccceeecCEEEeC-CCCceecceEEEEEehhhcCCCEEEEEE
Confidence            35899999999999988776654  89999999864    23678999998 89999999999998753 3456799999


Q ss_pred             EeccCCCCCCceeeeEEEeCcccc
Q 021710           92 FHSKLSETPKPLVGSVKFPLAHLV  115 (308)
Q Consensus        92 ~d~~~~~~~d~lLG~~~ipL~~L~  115 (308)
                      ||.+ ...++++||++.|+|..+.
T Consensus        95 ~d~~-~~~~~~~iG~~~i~l~~~~  117 (145)
T d1dqva2          95 VDYD-CIGHNEVIGVCRVGPEAAD  117 (145)
T ss_dssp             EECC-SSSCCEEEEECCCSSCTTC
T ss_pred             EecC-CCCCCcEEEEEEECchHcC
Confidence            9988 4678899999999997753

>d2yrba1 b.7.1.1 (A:596-737) Fantom {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: PLC-like (P variant)
domain: Fantom
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.16  E-value=0.013  Score=45.83  Aligned_cols=124  Identities=11%  Similarity=0.151  Sum_probs=85.4

Q ss_pred             ccEEEEEEEEeecCCCC-CCCCCCCCCcEEEEEEcCCceEEEEeecCCCCCCccccEEEEeeeCC------CCCceEEEE
Q 021710           18 THDLEITIICAKHLKNV-NWRNGGDLKPYVVFYVDPAYRLATQSDDSGSTRPVWNERFTLPITHS------VRESVLTLE   90 (308)
Q Consensus        18 ~~~L~VtIisAk~L~~~-~~~~~~~~dPYv~v~l~~~~k~kT~v~k~gt~nP~WnE~f~f~l~~~------~~~~~L~l~   90 (308)
                      .+.++|.|.++.--+.. ...+...+..||++.+-....+.|.+++.  .+|.+|-+..|.+..+      +....|.|+
T Consensus         9 EnlfEihi~~~~~s~e~l~~~~d~~p~tF~T~~Fyd~Etq~TPv~~g--~~p~ynfts~Y~V~~d~~fl~YL~~~~~~le   86 (142)
T d2yrba1           9 ENLFEIHINKVTFSSEVLQASGDKEPVTFCTYAFYDFELQTTPVVRG--LHPEYNFTSQYLVHVNDLFLQYIQKNTITLE   86 (142)
T ss_dssp             CEEEEEEEEEECCCHHHHHHHCSSCCEEEEEECSTTCCCEECCCEES--SSCCCCEEEEEEECCSHHHHHHHHHCCEEEE
T ss_pred             CcEEEEEEeeEEEcHHHHhhccCCCCcEEEEEEEEeeeeecCceecC--CCCcceeEEEEEEccCHHHHHHHhhCCEEEE
Confidence            46788888777311100 00011025568888776657788888874  8999999888887643      345678999


Q ss_pred             EEeccCCCCCCceeeeEEEeCcccccCCCCCCCceeEEEEEeCCCCC--CccEEEEEEEEc
Q 021710           91 IFHSKLSETPKPLVGSVKFPLAHLVDSDSSEPTQYVRKLEVLRPSGR--PQGKIRVKLVLN  149 (308)
Q Consensus        91 V~d~~~~~~~d~lLG~~~ipL~~L~~~~~~~~~~~~~~~~L~~~sg~--~~G~L~v~v~~~  149 (308)
                      |+...  ...-..|+.++|.+++|++...    .....-.|...++.  .-|.|...++++
T Consensus        87 lhqa~--g~~~~tvA~g~i~l~~lLd~~~----r~~~s~~l~g~~~~~~~~G~leyw~rlr  141 (142)
T d2yrba1          87 VHQAY--STEYETIAACQLKFHEILEKSG----RIFCTASLIGTKGDIPNFGTVEYWFRLR  141 (142)
T ss_dssp             EEEEC--SSCEEEEEEEEECCSHHHHCCS----CEEEEEEECBSSSCCTTSEEEEEEEEEE
T ss_pred             EEeec--CCCcceeEEEEEEhhHhhCccc----cccceeEEEccCCCcceEEEEEEEEEEE
Confidence            99875  2345689999999999998643    33566777777665  479998888875