Citrus Sinensis ID: 021778

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------
Protein Sequence
MESLYKKLYDKYDKLKKKKFSELDNLNKEQELKFTTYVNAADKYIEFLRSENEKLCAQVNNLKSEVDSIRSTSNEQCLHYQKLLMEENQKNKALSEEVETLQKLLQEGTASSSKDDNNDNMQLYTPEGAQPTSGNQSKEKTRKRRRKFGSESESECMITASSRGQDDAIEGQSAKDLSKENVSWGALLNEQLAECCKRTIDTSGGGENDSGPANCLFQALIEYLLGMKLSPYHESEGRCVSALHQSTGYSFSLTWVKSKDGEEFELLYRVLSLGTLERVALGWMMDEIMFSTSMCPIFFERISGVIK
Secondary Structure (PSIPRED)
cHHHHHHHHHHHHHHHHHHHcccHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccHHHHHHHHHccccHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccHHHHHHHHHHHHHccccccccccccEEEEEEEccccccEEEEEEccccccccccEEEEccccHHHHHHHHHHHHHHHcccccHHHHHHHHHHHcc
Secondary Structure Prediction (SSPRO)
cHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccEEccHHHccccccccccccccHHccccccHHHHHHEEEcccccccccEccccccccccccccccccccccHHHHHHcccccccccccccccHHHHHHHHHHHHHccEEEEcccccEEEEEEEEcccccEEEEEEEEccccccccEEEEEccHHHHHHHHHHHHHHHccEcccccHHHHHHHHHHcc
Coil and Loop (DISEMBL)
MESLYKKLYDKYDKLKKKKFSELDNLNKEQELKFTTYVNAADKYIEFLRSENEKLCAQVNNLKSEVDSIRSTSNEQCLHYQKLLMEENQKNKALSEEVETLQKLLQEgtassskddnndnmqlytpegaqptsgnqskekTRKRRrkfgsesesECMITAssrgqddaiegqsakdlskenVSWGALLNEQLAECCKRtidtsgggendsgpaNCLFQALIEYLLgmklspyhesegrcvsalhqstgysfsltwvkskdgeEFELLYRVLSLGTLERVALGWMMDEIMFSTSMCPIFFERISGVIK
Flexible Loop (DISEMBL)
meslykklydkydklkkkkfseldnlnkeqelkfttyVNAADKYIEFLRSENEKLCAQVNNLKSevdsirstsNEQCLHYQKLLMEENQKNKALSEEVETLQKLLQEgtassskddnndNMQLytpegaqptsgnqskektrkrrrkfgsesesecmitassrgqddaIEGQSAKDLSKENVSWGALLNEQLAECCKRTIDTsgggendsgPANCLFQALIEYLLGMKLSPYHESEGRCVSALHQSTGYSFSLTWVKSKDGEEFELLYRVLSLGTLERVALGWMMDEIMFSTSMCPIFFERISGVIK
Low Complexity Region (SEG)
MESlykklydkydklkkkkFSELDNLNKEQELKFTTYVNAADKYIEFLRSENEKLCAQVNNLKSEVDSIRSTSNEQCLHYQKLLMEENQKNKALSEEVETLQKLLQEGTASSSKDDNNDNMQLYTPEGAQPTSGNQSKEKTRKRRRKFGSESESECMITASSRGQDDAIEGQSAKDLSKENVSWGALLNEQLAECCKRTIDTSGGGENDSGPANCLFQALIEYLLGMKLSPYHESEGRCVSALHQSTGYSFSLTWVKSKDGEEFELLYRVLSLGTLERVALGWMMDEIMFSTSMCPIFFERISGVIK
Disordered region (IsUnstruct)
********Y********************QELKFTTYVNAADKYIEFLRSENEKLCAQVNNL**************CLHYQ****************************************************************************************************VSWGALLNEQLAECCKRTIDT*********PANCLFQALIEYLLGMKLSPYHESEGRCVSALHQSTGYSFSLTWVKSKDGEEFELLYRVLSLGTLERVALGWMMDEIMFSTSMCPIFFERISGV**
Disordered Region (DISOPRED)
**SLYKKLYDKYDK************************N********************************************************************************************************************************************************************************LFQALIEYLLGMKLSPYHESEGRCVSALHQSTGYSFSLTWVKSKDGEEFELLYRVLSLGTLERVALGWMMDEIMFSTSMCPIFFERISGVI*
Disordered Region (DISEMBL)
MESLYKKLYDKYDKLKKKKFSELDNLNKEQELKFTTYVNAADKYIEFLRSENEKLCAQVNNLKSEVDSIRSTSNEQCLHYQKLLMEENQKNKALSEEVETLQKLL**********DNNDNMQLYTPEG**************************************************KENVSWGALLNEQLAECCKRTIDTSGGGENDSGPANCLFQALIEYLLGMKLSPYHESEGRCVSALHQSTGYSFSLTWVKSKDGEEFELLYRVLSLGTLERVALGWMMDEIMFSTSMCPIFFERISGVIK
Disordered Region (DISPRO)
MESLYKKLYDKYDKLKKKKFSELDNLNKEQELKFTTYVNAADKYIEFLRSENEKLCAQVNNLKSEVDSIRSTSNEQCLHYQKLLMEENQKNKALSEEVETLQKLLQEGTASS********MQLYTPEGAQ*********************************************************LNEQLAECCKRTIDT*******SGPANCLFQALIEYLLGMKLSPYHESEGRCVSALHQSTGYSFSLTWVKSKDGEEFELLYRVLSLGTLERVALGWMMDEIMFSTSMCPIFFERISGVIK
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MESLYKKLxxxxxxxxxxxxxxxxxxxxxQELKFTTYVNAADKYxxxxxxxxxxxxxxxxxxxxxxxxxxxxSNEQCLHYQKLxxxxxxxxxxxxxxxxxxxxxxxxxxxxSSKDDNNDNMQLYTPEGAQPTSGNQSKEKTRKRRRKFGSESESECMITASSRGQDDAIEGQSAKDLSKENVSWGALLNEQLAECCKRTIDTSGGGENDSGPANCLFQALIEYLLGMKLSPYHESEGRCVSALHQSTGYSFSLTWVKSKDGEEFELLYRVLSLGTLERVALGWMMDEIMFSTSMCPIFFERISGVIK
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

No hits with e-value below 0.001 by BLAST

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	307
297734962	314	unnamed protein product [Vitis vinifera]	0.996	0.974	0.592	3e-93
359479461	341	PREDICTED: uncharacterized protein LOC10	0.996	0.897	0.583	2e-91
224106221	310	predicted protein [Populus trichocarpa]	0.983	0.974	0.538	1e-79
255552824	366	hypothetical protein RCOM_0854030 [Ricin	0.996	0.836	0.483	1e-75
449445045	299	PREDICTED: uncharacterized protein LOC10	0.951	0.976	0.479	3e-67
357506877	292	hypothetical protein MTR_7g075050 [Medic	0.918	0.965	0.461	1e-62
357516403	294	hypothetical protein MTR_8g059560 [Medic	0.925	0.965	0.455	5e-62
357516401	292	hypothetical protein MTR_8g059560 [Medic	0.918	0.965	0.455	1e-61
22331190	282	protein titan9 [Arabidopsis thaliana] gi	0.908	0.989	0.449	5e-59
297834948	289	hypothetical protein ARALYDRAFT_318761 [	0.905	0.961	0.463	2e-56

>gi|297734962|emb|CBI17196.3| unnamed protein product [Vitis vinifera]

 Score =  347 bits (891), Expect = 3e-93,   Method: Compositional matrix adjust.
 Identities = 185/312 (59%), Positives = 227/312 (72%), Gaps = 6/312 (1%)

Query: 1   MESLYKKLYDKYDKLKKKKFSELDNLNKEQELKFTTYVNAADKYIEFLRSENEKLCAQVN 60
           ME+LYKKLY+KY KLK +K +E++ LN+EQE+KF TYV+AAD+ IE LR+EN KL  QV 
Sbjct: 1   MEALYKKLYEKYTKLKTRKETEIEQLNREQEVKFLTYVSAADELIEHLRNENGKLLEQVA 60

Query: 61  NLKSEVDSIRSTSNEQCLHYQKLLMEENQKNKALSEEVETLQKLLQEGTASSSKDDNNDN 120
            L+SEV SIRST +E+   YQ +LMEENQKNK LSEE+E L+ L + G   SSK D N+N
Sbjct: 61  ELRSEVASIRSTKDEEYSKYQNILMEENQKNKELSEEIERLRNLQRVGLCYSSKIDKNEN 120

Query: 121 MQLYTPEGAQ----PTSGNQSKEKTRKRRRKFGSESESECMITASSRGQDD-AIEGQSAK 175
            QL TP  AQ     TS   +    RKRRR+ G E E E   + S  GQ   + E +SAK
Sbjct: 121 GQLSTPGVAQVGRVDTSNASAISMARKRRRRSGPE-EKEGASSQSVSGQVVLSRERESAK 179

Query: 176 DLSKENVSWGALLNEQLAECCKRTIDTSGGGENDSGPANCLFQALIEYLLGMKLSPYHES 235
           DLSKE +S G L++ Q A CC+R ID+SG   ND+ PA+CLFQAL+E+L+GMKLS   E 
Sbjct: 180 DLSKETLSSGILVDVQQAGCCRRNIDSSGDDINDTSPASCLFQALVEFLVGMKLSAVREP 239

Query: 236 EGRCVSALHQSTGYSFSLTWVKSKDGEEFELLYRVLSLGTLERVALGWMMDEIMFSTSMC 295
           +G+C+SALHQS+GYSFSLTWV    GEE ELLYRV SLGT ERVA GWM D +MFST+MC
Sbjct: 240 DGKCISALHQSSGYSFSLTWVNKAAGEEMELLYRVQSLGTFERVAPGWMRDVLMFSTNMC 299

Query: 296 PIFFERISGVIK 307
           P+FFER+S VIK
Sbjct: 300 PVFFERVSRVIK 311

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359479461|ref|XP_003632275.1| PREDICTED: uncharacterized protein LOC100854476 [Vitis vinifera]

 Score =  341 bits (875), Expect = 2e-91,   Method: Compositional matrix adjust.
 Identities = 185/317 (58%), Positives = 227/317 (71%), Gaps = 11/317 (3%)

Query: 1   MESLYKKLYDKYDKLKKKKFSELDNLNKEQELKFTTYVNAADKYIEFLRSENEKLCAQVN 60
           ME+LYKKLY+KY KLK +K +E++ LN+EQE+KF TYV+AAD+ IE LR+EN KL  QV 
Sbjct: 23  MEALYKKLYEKYTKLKTRKETEIEQLNREQEVKFLTYVSAADELIEHLRNENGKLLEQVA 82

Query: 61  NLKSEVDSIR-----STSNEQCLHYQKLLMEENQKNKALSEEVETLQKLLQEGTASSSKD 115
            L+SEV SIR     ST +E+   YQ +LMEENQKNK LSEE+E L+ L + G   SSK 
Sbjct: 83  ELRSEVASIRHALTRSTKDEEYSKYQNILMEENQKNKELSEEIERLRNLQRVGLCYSSKI 142

Query: 116 DNNDNMQLYTPEGAQ----PTSGNQSKEKTRKRRRKFGSESESECMITASSRGQDD-AIE 170
           D N+N QL TP  AQ     TS   +    RKRRR+ G E E E   + S  GQ   + E
Sbjct: 143 DKNENGQLSTPGVAQVGRVDTSNASAISMARKRRRRSGPE-EKEGASSQSVSGQVVLSRE 201

Query: 171 GQSAKDLSKENVSWGALLNEQLAECCKRTIDTSGGGENDSGPANCLFQALIEYLLGMKLS 230
            +SAKDLSKE +S G L++ Q A CC+R ID+SG   ND+ PA+CLFQAL+E+L+GMKLS
Sbjct: 202 RESAKDLSKETLSSGILVDVQQAGCCRRNIDSSGDDINDTSPASCLFQALVEFLVGMKLS 261

Query: 231 PYHESEGRCVSALHQSTGYSFSLTWVKSKDGEEFELLYRVLSLGTLERVALGWMMDEIMF 290
              E +G+C+SALHQS+GYSFSLTWV    GEE ELLYRV SLGT ERVA GWM D +MF
Sbjct: 262 AVREPDGKCISALHQSSGYSFSLTWVNKAAGEEMELLYRVQSLGTFERVAPGWMRDVLMF 321

Query: 291 STSMCPIFFERISGVIK 307
           ST+MCP+FFER+S VIK
Sbjct: 322 STNMCPVFFERVSRVIK 338

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224106221|ref|XP_002314090.1| predicted protein [Populus trichocarpa] gi|222850498|gb|EEE88045.1| predicted protein [Populus trichocarpa]

 Score =  302 bits (774), Expect = 1e-79,   Method: Compositional matrix adjust.
 Identities = 168/312 (53%), Positives = 215/312 (68%), Gaps = 10/312 (3%)

Query: 1   MESLYKKLYDKYDKLKKKKFSELDNLNKEQELKFTTYVNAADKYIEFLRSENEKLCAQVN 60
           ME LYKKLY KYDKLKKK+ SE D LNK+QE+KF  Y + A++ I++L+ EN++L  Q +
Sbjct: 1   MEDLYKKLYAKYDKLKKKQLSEFDELNKDQEVKFLNYASVAEEMIQYLKDENDRLRKQAS 60

Query: 61  NLKSEVDSIRSTSNEQCLHYQKLLMEENQKNKALSEEVETLQKLLQEGTASSSKDDNNDN 120
           +L+SE  SIRST +EQC  YQKLLMEENQKNK L+EEVE LQ  LQ G   +SKD NNDN
Sbjct: 61  DLRSEAASIRSTMDEQCAEYQKLLMEENQKNKILNEEVEKLQNQLQYGLPCNSKDGNNDN 120

Query: 121 MQLYTPEGAQPTSGNQSKEKTRKRRRKFGSESESECMITASSRGQDDAI-----EGQSAK 175
           +QL   E AQ T   +S   TR+  RK   E+  E M    + G +D +     E +SAK
Sbjct: 121 VQLNMLETAQVTPEERSIASTRRMVRKRNREA-REKMEEEITHGGNDIVGYNDMEEKSAK 179

Query: 176 DLSKENVSWGALLNEQLAECCKRTIDTSGGGENDSGPANCLFQALIEYLLGMKLSPYHES 235
             SK  VS G L N+Q  E C+R +  S     +SGPAN  FQAL+EYL+GMKLS  +++
Sbjct: 180 RSSKGTVSRGDLPNDQQLESCERILYRSA----ESGPANFQFQALLEYLVGMKLSAVNQN 235

Query: 236 EGRCVSALHQSTGYSFSLTWVKSKDGEEFELLYRVLSLGTLERVALGWMMDEIMFSTSMC 295
           +  C+SALHQS+G++F+LTW+K++  EE ELLYRVL+LGT ERVA  WM   +MFS  M 
Sbjct: 236 DEVCISALHQSSGFAFTLTWMKNEAVEEPELLYRVLTLGTFERVAPEWMRSVLMFSMRMW 295

Query: 296 PIFFERISGVIK 307
           PIFFER++ VIK
Sbjct: 296 PIFFERLACVIK 307

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255552824|ref|XP_002517455.1| hypothetical protein RCOM_0854030 [Ricinus communis] gi|223543466|gb|EEF44997.1| hypothetical protein RCOM_0854030 [Ricinus communis]

 Score =  289 bits (739), Expect = 1e-75,   Method: Compositional matrix adjust.
 Identities = 176/364 (48%), Positives = 215/364 (59%), Gaps = 58/364 (15%)

Query: 1   MESLYKKLYDKYDKLKKKKFSELDNLNKEQELKFTTYVNAADKYIEFLRSENEKLCAQVN 60
           ME+LY KLY+KYD LKKK+ SELD ++K+QE+ F  YV+AA++ I+ L++EN  L AQV+
Sbjct: 1   MEALYAKLYNKYDALKKKRISELDEISKDQEVNFLNYVSAAEELIQHLKNENNSLSAQVS 60

Query: 61  NLKSEVDSIR----------------STSNEQCLHYQKLLMEENQKNKALSEEVETLQKL 104
            L+S+V SIR                ST +E+C  YQK LMEE+QKNK L EEVE LQKL
Sbjct: 61  ELRSKVASIRHVYPNVVFLLVVAPLCSTKDEECARYQKQLMEESQKNKVLYEEVERLQKL 120

Query: 105 LQEGTASSSKDDNNDNMQLYTPEGAQPTSGNQSKEKTRKR--RRKFGSESESECMITASS 162
            QE  + SSK   +DN QL   + A  TSG    E TR+   +R   + +E E  IT   
Sbjct: 121 -QEQFSFSSKHGTDDNKQLKMLQIAHVTSGEVISESTRRMTIKRSREASAEKEGFITPDR 179

Query: 163 RGQDDAIEGQSAKDLS-------------------------------------KENVSWG 185
             QDD +  +SAKD S                                     +  VS G
Sbjct: 180 SNQDDLLVRESAKDPSAVRRRSGEAGVESDDFISPDQSNRDDVSLRVSANDPSRLTVSSG 239

Query: 186 ALLNEQLAECCKRTIDTSGGG--ENDSGPANCLFQALIEYLLGMKLSPYHESEGRCVSAL 243
            L NEQ   CC RT+  SGGG    D+G  NC FQALIE LLGMKLS  +++E  CVSAL
Sbjct: 240 DLGNEQEPACCGRTVGRSGGGGFVTDNGSTNCQFQALIECLLGMKLSTANQTEEICVSAL 299

Query: 244 HQSTGYSFSLTWVKSKDGEEFELLYRVLSLGTLERVALGWMMDEIMFSTSMCPIFFERIS 303
           HQS+GYSFSLTWVK   G+E ELLYR  +LGT ERVA  WM   I FSTSMCPIFFER++
Sbjct: 300 HQSSGYSFSLTWVKKAAGQEPELLYRPSTLGTFERVAPEWMRSVIKFSTSMCPIFFERVA 359

Query: 304 GVIK 307
            VIK
Sbjct: 360 SVIK 363

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449445045|ref|XP_004140284.1| PREDICTED: uncharacterized protein LOC101208218 [Cucumis sativus]

 Score =  261 bits (667), Expect = 3e-67,   Method: Compositional matrix adjust.
 Identities = 149/311 (47%), Positives = 198/311 (63%), Gaps = 19/311 (6%)

Query: 1   MESLYKKLYDKYDKLKKKKFSELDNLNKEQELKFTTYVNAADKYIEFLRSENEKLCAQVN 60
           ME+LYKKLYDKY KLK KK  + D LNK+QE KF  YV+AA++ I+ L+SEN+KL  QVN
Sbjct: 1   MEALYKKLYDKYTKLKTKKMLDFDQLNKDQEAKFLNYVSAAEELIQHLKSENDKLRLQVN 60

Query: 61  NLKSEVDSIRSTSNEQCLHYQKLLMEENQKNKALSEEVETLQKLLQEGTASSSKDDNNDN 120
            L+ E+ S RS+ + +C  YQKLLMEENQ+N  LSEEVE LQKL QEG        N  +
Sbjct: 61  ELRDEMASTRSSMDAKCADYQKLLMEENQRNSTLSEEVEKLQKLQQEGNFGGF--SNGIS 118

Query: 121 MQLYTPEGAQPTSGNQSKEK---TRKRRRKFGSESESECMITASSRGQDDAIEGQSAKDL 177
            +L+TP G+Q   G  SK     TR+R+R   +   +  +   ++  Q D  + QS  +L
Sbjct: 119 KELHTPSGSQSVFGVVSKGPSGGTRRRKRSRDATQVTNELRIVNASAQADPTQRQSTSEL 178

Query: 178 SKENVSWGALLNEQLAECCKRTIDTSGGGENDSGPANCLFQALIEYLLGMKLSPYHESEG 237
            ++  S           CC     +  G  ND    NC +Q L+E+++GM++S  + +EG
Sbjct: 179 PEKAASSEG--------CC----GSKDGRVNDCVSTNCPYQCLVEHMMGMEVSTTNRNEG 226

Query: 238 RCVSALHQSTGYSFSLTWVKSKDGEEFELLYRVLSLGTLERVALGWMMDE-IMFSTSMCP 296
            C+SA H+S+GYSFSLTWV    GE  E+LYRVLSLGT ERVA  WM +E I+FSTSMCP
Sbjct: 227 ICISAFHKSSGYSFSLTWVNKLIGET-EILYRVLSLGTFERVAPEWMKEEAIIFSTSMCP 285

Query: 297 IFFERISGVIK 307
            FFE+++ VIK
Sbjct: 286 TFFEKVTRVIK 296

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357506877|ref|XP_003623727.1| hypothetical protein MTR_7g075050 [Medicago truncatula] gi|355498742|gb|AES79945.1| hypothetical protein MTR_7g075050 [Medicago truncatula]

 Score =  246 bits (628), Expect = 1e-62,   Method: Compositional matrix adjust.
 Identities = 144/312 (46%), Positives = 197/312 (63%), Gaps = 30/312 (9%)

Query: 1   MESLYKKLYDKYDKLKKKKFSELDNLNKEQELKFTTYVNAADKYIEFLRSENEKLCAQVN 60
           ME+LYKKLY KY  LK  K SEL+++NKEQELKF  +V+AA++ I+ LR+EN+KL  Q+N
Sbjct: 1   MEALYKKLYSKYTTLKTNKLSELEDVNKEQELKFLKFVSAAEEVIDHLRTENDKLLGQIN 60

Query: 61  NLKSEVDSIRSTSNEQCLHYQKLLMEENQKNKALSEEVETLQKLLQEGTA---SSSKDDN 117
           +L +E+ S+R   + + + +Q+LL+EE +KN+AL EEVE LQKLL EGT+   S+ K  N
Sbjct: 61  DLGNELTSVRVAKDNELVEHQRLLLEEKKKNEALFEEVEKLQKLLNEGTSGDLSNRKVVN 120

Query: 118 NDNMQLYTPEGAQPTSGNQSKEKTRKRRR--KFGSESESECMITASSRGQDDAIEGQSAK 175
           N             TS N S   TRKR R  +   + E+ C+    S  + ++++ +S +
Sbjct: 121 N-------------TSNNSSIRMTRKRMRQEQDALDIEARCI---PSENEGNSVDRESTR 164

Query: 176 DLSKENVSWGALLNEQLAEC-CKRTIDTSGGGENDSGPANCLFQALIEYLLGMKLSPYHE 234
              KEN S          EC   +  D SG    +S   N L  AL EY L MKLS   +
Sbjct: 165 SFLKENASN--------KECSTSKANDQSGVDTQESDHQNWLVHALFEYTLDMKLSTDCQ 216

Query: 235 SEGRCVSALHQSTGYSFSLTWVKSKDGEEFELLYRVLSLGTLERVALGWMMDEIMFSTSM 294
           +   C+SA+HQS+GYSFS++W+    GEE ELLY VLSLGTLER+A  WM ++IMFS +M
Sbjct: 217 TGRLCLSAMHQSSGYSFSISWISRAPGEEAELLYHVLSLGTLERLAPEWMREDIMFSPTM 276

Query: 295 CPIFFERISGVI 306
           CPIFFER++ VI
Sbjct: 277 CPIFFERVTRVI 288

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357516403|ref|XP_003628490.1| hypothetical protein MTR_8g059560 [Medicago truncatula] gi|355522512|gb|AET02966.1| hypothetical protein MTR_8g059560 [Medicago truncatula]

 Score =  244 bits (622), Expect = 5e-62,   Method: Compositional matrix adjust.
 Identities = 142/312 (45%), Positives = 198/312 (63%), Gaps = 28/312 (8%)

Query: 1   MESLYKKLYDKYDKLKKKKFSELDNLNKEQELKFTTYVNAADKYIEFLRSENEKLCAQVN 60
           ME+LYKKLY KY  LK  K SEL++++KEQELKF  +V+AA+  I+ LR+EN+KL  Q+N
Sbjct: 1   MEALYKKLYSKYTTLKTNKLSELEDVHKEQELKFLKFVSAAEDVIDHLRTENDKLLGQIN 60

Query: 61  NLKSEVDSIRSTSNEQCLHYQKLLMEENQKNKALSEEVETLQKLLQEGTA---SSSKDDN 117
           +L +E+ S+R   + + + +++LL+EE +KN+AL EEVE LQKLL+EGT+   S+ K  N
Sbjct: 61  DLGNELTSVRVAKDNELVEHKRLLLEEKKKNEALFEEVEKLQKLLKEGTSGDLSNRKVVN 120

Query: 118 NDNMQLYTPEGAQPTSGNQSKEKTRKRRR--KFGSESESECMITASSRGQDDAIEGQSAK 175
           N             TS N S   TRKR R  +   + E+ C+    S  + ++++ +S +
Sbjct: 121 N-------------TSNNSSIRMTRKRMRQEQDALDIEARCI---PSENEGNSVDRESTR 164

Query: 176 DLSKENVSWGALLNEQLAEC-CKRTIDTSGGGENDSGPANCLFQALIEYLLGMKLSPYHE 234
              KEN S       +  EC   +  D SG    +S   N L  AL EY L MKLS   +
Sbjct: 165 SFLKENAS------NKRQECSSSKANDQSGVDTQESDHQNWLVHALFEYTLDMKLSTDCQ 218

Query: 235 SEGRCVSALHQSTGYSFSLTWVKSKDGEEFELLYRVLSLGTLERVALGWMMDEIMFSTSM 294
           +   C+SA+HQS+GYSFS++W+    GEE ELLY VLSLGTLER+A  WM ++IMFS +M
Sbjct: 219 TGRLCLSAMHQSSGYSFSISWISRAPGEEAELLYHVLSLGTLERLAPEWMREDIMFSPTM 278

Query: 295 CPIFFERISGVI 306
           CPIFFER++ VI
Sbjct: 279 CPIFFERVTHVI 290

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357516401|ref|XP_003628489.1| hypothetical protein MTR_8g059560 [Medicago truncatula] gi|355522511|gb|AET02965.1| hypothetical protein MTR_8g059560 [Medicago truncatula]

 Score =  243 bits (619), Expect = 1e-61,   Method: Compositional matrix adjust.
 Identities = 142/312 (45%), Positives = 197/312 (63%), Gaps = 30/312 (9%)

Query: 1   MESLYKKLYDKYDKLKKKKFSELDNLNKEQELKFTTYVNAADKYIEFLRSENEKLCAQVN 60
           ME+LYKKLY KY  LK  K SEL++++KEQELKF  +V+AA+  I+ LR+EN+KL  Q+N
Sbjct: 1   MEALYKKLYSKYTTLKTNKLSELEDVHKEQELKFLKFVSAAEDVIDHLRTENDKLLGQIN 60

Query: 61  NLKSEVDSIRSTSNEQCLHYQKLLMEENQKNKALSEEVETLQKLLQEGTA---SSSKDDN 117
           +L +E+ S+R   + + + +++LL+EE +KN+AL EEVE LQKLL+EGT+   S+ K  N
Sbjct: 61  DLGNELTSVRVAKDNELVEHKRLLLEEKKKNEALFEEVEKLQKLLKEGTSGDLSNRKVVN 120

Query: 118 NDNMQLYTPEGAQPTSGNQSKEKTRKRRR--KFGSESESECMITASSRGQDDAIEGQSAK 175
           N             TS N S   TRKR R  +   + E+ C+    S  + ++++ +S +
Sbjct: 121 N-------------TSNNSSIRMTRKRMRQEQDALDIEARCI---PSENEGNSVDRESTR 164

Query: 176 DLSKENVSWGALLNEQLAEC-CKRTIDTSGGGENDSGPANCLFQALIEYLLGMKLSPYHE 234
              KEN S          EC   +  D SG    +S   N L  AL EY L MKLS   +
Sbjct: 165 SFLKENASN--------KECSSSKANDQSGVDTQESDHQNWLVHALFEYTLDMKLSTDCQ 216

Query: 235 SEGRCVSALHQSTGYSFSLTWVKSKDGEEFELLYRVLSLGTLERVALGWMMDEIMFSTSM 294
           +   C+SA+HQS+GYSFS++W+    GEE ELLY VLSLGTLER+A  WM ++IMFS +M
Sbjct: 217 TGRLCLSAMHQSSGYSFSISWISRAPGEEAELLYHVLSLGTLERLAPEWMREDIMFSPTM 276

Query: 295 CPIFFERISGVI 306
           CPIFFER++ VI
Sbjct: 277 CPIFFERVTHVI 288

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|22331190|ref|NP_188642.2| protein titan9 [Arabidopsis thaliana] gi|42572493|ref|NP_974342.1| protein titan9 [Arabidopsis thaliana] gi|9293961|dbj|BAB01864.1| unnamed protein product [Arabidopsis thaliana] gi|17380796|gb|AAL36085.1| unknown protein [Arabidopsis thaliana] gi|21689809|gb|AAM67548.1| unknown protein [Arabidopsis thaliana] gi|332642806|gb|AEE76327.1| protein titan9 [Arabidopsis thaliana] gi|332642807|gb|AEE76328.1| protein titan9 [Arabidopsis thaliana]

 Score =  234 bits (596), Expect = 5e-59,   Method: Compositional matrix adjust.
 Identities = 138/307 (44%), Positives = 189/307 (61%), Gaps = 28/307 (9%)

Query: 1   MESLYKKLYDKYDKLKKKKFSELDNLNKEQELKFTTYVNAADKYIEFLRSENEKLCAQVN 60
           ME+LY KLYDKY KL+KKK+SE D +NKEQE KF T+V+A+++ +E LR EN+     V 
Sbjct: 1   MEALYAKLYDKYTKLQKKKYSEYDEINKEQEEKFLTFVSASEELMEHLRGENQSSLEMVE 60

Query: 61  NLKSEVDSIRSTSNEQCLHYQKLLMEENQKNKALSEEVETLQKLLQEGTASSSKDDNNDN 120
            L++E+ SIRS  +++ L  QKLLMEE  KNK+LSEEV  L++L+QE    + +D +   
Sbjct: 61  KLRNEIISIRSGRDDKFLECQKLLMEEELKNKSLSEEVVKLKELVQEEHPRNYEDQSGKK 120

Query: 121 MQLYTPEGAQPTSGNQSKEKTRKRRRKFGSESESECMITASSRGQDDAIEGQSAKDLSKE 180
            +  TPE A+ T+ +                     MI  S   +D       + D+SK 
Sbjct: 121 QKRKTPESARVTTRS---------------------MIKRSRLSEDLVETDMVSPDISKH 159

Query: 181 NVSWGALLNEQLAECCKRTIDTSGGGENDSGPANCLFQALIEYLLGMKLSPYHESEGRCV 240
           + +   LL  Q  +CC+ T D S      S  A+C FQAL ++LLGMKLS  ++ +  C+
Sbjct: 160 HKAKEPLLVSQ-PQCCRTTYDGS------SSSASCTFQALGKHLLGMKLSTNNKGKRACI 212

Query: 241 SALHQSTGYSFSLTWVKSKDGEEFELLYRVLSLGTLERVALGWMMDEIMFSTSMCPIFFE 300
            A H +TG SFSLT++ + +GEE ELLY+  SLGT +RVA  WM + I FSTSMCPIFFE
Sbjct: 213 VASHPTTGLSFSLTFINNPNGEESELLYKPASLGTFQRVAPEWMREVIKFSTSMCPIFFE 272

Query: 301 RISGVIK 307
           R+S VIK
Sbjct: 273 RVSRVIK 279

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297834948|ref|XP_002885356.1| hypothetical protein ARALYDRAFT_318761 [Arabidopsis lyrata subsp. lyrata] gi|297331196|gb|EFH61615.1| hypothetical protein ARALYDRAFT_318761 [Arabidopsis lyrata subsp. lyrata]

 Score =  225 bits (574), Expect = 2e-56,   Method: Compositional matrix adjust.
 Identities = 146/315 (46%), Positives = 194/315 (61%), Gaps = 37/315 (11%)

Query: 1   MESLYKKLYDKYDKLKKKKFSELDNLNKEQELKFTTYVNAADKYIEFLRSENEKLCAQVN 60
           ME+LY KLYDKY KLKKKKFSE D +N+EQE KF  +V+A+++ +E LR EN+ L   V 
Sbjct: 1   MEALYAKLYDKYSKLKKKKFSEYDEVNREQEEKFLNFVSASEELMEHLRGENQNLLEIVE 60

Query: 61  NLKSEVDSIR-------STSNEQCLHYQKLLMEENQKNKALSEEVETLQKLLQEGTASSS 113
            +++E+ SIR       S  +++CL YQKLL EE QKNKALSEEV  L++L++EG   + 
Sbjct: 61  KIRNEMTSIRHVHHILRSGRDDKCLEYQKLLREEEQKNKALSEEVVKLKELVKEGHPRNY 120

Query: 114 KDDNNDNMQLYTPEGAQPTSGNQSKEKTRKRRRKFGSESESECMITASSRGQDDAIEGQ- 172
           +D +    +  TPE A+ T        TR  R++              SR  +D +E   
Sbjct: 121 EDQSGRKQETKTPETARVT--------TRSMRKR--------------SRLSEDMVETDI 158

Query: 173 SAKDLSKENVSWGALLNEQLAECCKRTIDTSGGGENDSGPANCLFQALIEYLLGMKLSPY 232
            +  +SK + +   LL  Q  +CCK T D S      S  A+C FQAL E+LLGMKLS  
Sbjct: 159 VSPQISKHHKAKETLLVSQ-PQCCKTTYDGS------SSSASCTFQALGEHLLGMKLSTN 211

Query: 233 HESEGRCVSALHQSTGYSFSLTWVKSKDGEEFELLYRVLSLGTLERVALGWMMDEIMFST 292
           +E E  C+ A H +TG SFSLT++ +  GEE ELLY V+SLGT +RVA  WM + I FST
Sbjct: 212 NEGEHVCIVASHPTTGLSFSLTFINNPIGEESELLYEVVSLGTFQRVAPEWMREVIKFST 271

Query: 293 SMCPIFFERISGVIK 307
           SMCP+FF R+S VIK
Sbjct: 272 SMCPVFFARVSRVIK 286

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	307
TAIR|locus:2087630	282	TTN9 "AT3G20070" [Arabidopsis	0.833	0.907	0.352	9.8e-32

TAIR|locus:2087630 TTN9 "AT3G20070" [Arabidopsis thaliana (taxid:3702)]

 Score = 348 (127.6 bits), Expect = 9.8e-32, P = 9.8e-32
 Identities = 94/267 (35%), Positives = 139/267 (52%)

Query:    43 KYIEFLRSENEKLCAQVNNLKSEVDSIRSTSNEQCLHYQKLLMEENQKNKALSEEVETLQ 102
             +Y E  + + EK    V+  +  ++ +R  +       +KL  E         ++    Q
Sbjct:    22 EYDEINKEQEEKFLTFVSASEELMEHLRGENQSSLEMVEKLRNEIISIRSGRDDKFLECQ 81

Query:   103 KLL-QEGTASSSKDDNNDNMQLYTPEGAQPTSGNQSKEKTRKRRRKFGSESESECMITAS 161
             KLL +E   + S  +    ++    E   P +      K +KR+    +   +  MI  S
Sbjct:    82 KLLMEEELKNKSLSEEVVKLKELVQE-EHPRNYEDQSGKKQKRKTPESARVTTRSMIKRS 140

Query:   162 SRGQDDAIEGQSAK-DLSKENVSWGALLNEQLAECCKRTIDTSGGGENDSGPANCLFQAL 220
              R  +D +E      D+SK + +   LL  Q  +CC+ T D S      S  A+C FQAL
Sbjct:   141 -RLSEDLVETDMVSPDISKHHKAKEPLLVSQ-PQCCRTTYDGS------SSSASCTFQAL 192

Query:   221 IEYLLGMKLSPYHESEGRCVSALHQSTGYSFSLTWVKSKDGEEFELLYRVLSLGTLERVA 280
              ++LLGMKLS  ++ +  C+ A H +TG SFSLT++ + +GEE ELLY+  SLGT +RVA
Sbjct:   193 GKHLLGMKLSTNNKGKRACIVASHPTTGLSFSLTFINNPNGEESELLYKPASLGTFQRVA 252

Query:   281 LGWMMDEIMFSTSMCPIFFERISGVIK 307
               WM + I FSTSMCPIFFER+S VIK
Sbjct:   253 PEWMREVIKFSTSMCPIFFERVSRVIK 279

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0009793 "embryo development ending in seed dormancy" evidence=IMP

GO:0009960 "endosperm development" evidence=IMP

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	307
PF15272	196	BBP1_C: Spindle pole body component BBP1, C-termin	93.62
COG2433	652	Uncharacterized conserved protein [Function unknow	92.63
PRK10884	206	SH3 domain-containing protein; Provisional	91.96
PF00038	312	Filament: Intermediate filament protein; InterPro:	87.94
PF11559	151	ADIP: Afadin- and alpha -actinin-Binding; InterPro	87.89
PF07798	177	DUF1640: Protein of unknown function (DUF1640); In	87.84
PLN03188	1320	kinesin-12 family protein; Provisional	87.81
PRK10884	206	SH3 domain-containing protein; Provisional	87.06
smart00338	65	BRLZ basic region leucin zipper.	86.87
PF06548	488	Kinesin-related: Kinesin-related; InterPro: IPR010	84.83
PF00170	64	bZIP_1: bZIP transcription factor cAMP response el	82.75
PF04420	161	CHD5: CHD5-like protein; InterPro: IPR007514 Membe	82.73
PF05010	207	TACC: Transforming acidic coiled-coil-containing p	81.08

>PF15272 BBP1_C: Spindle pole body component BBP1, C-terminal

Probab=93.62  E-value=0.36  Score=44.47  Aligned_cols=14  Identities=64%  Similarity=0.992  Sum_probs=12.5

Q ss_pred             HHHHHHHHHHHhhh
Q 021778            4 LYKKLYDKYDKLKK   17 (307)
Q Consensus         4 Ly~KLydKYt~LKk   17 (307)
                      -|-|||.||..||+
T Consensus        66 nYYkL~~KY~~LK~   79 (196)
T PF15272_consen   66 NYYKLYSKYQELKK   79 (196)
T ss_pred             HHHHHHHHHHHHHH
Confidence            37899999999999

>COG2433 Uncharacterized conserved protein [Function unknown]

Probab=92.63  E-value=0.74  Score=48.81  Aligned_cols=78  Identities=21%  Similarity=0.282  Sum_probs=62.8

Q ss_pred             hhHHHHHHHHHHHHHHHHhhhHHHHHHHHhhhhhhhhhc-------------ccchHHHHHHHHHHHHHHhhhhhhHHHH
Q 021778           32 LKFTTYVNAADKYIEFLRSENEKLCAQVNNLKSEVDSIR-------------STSNEQCLHYQKLLMEENQKNKALSEEV   98 (307)
Q Consensus        32 ~kf~~~~sAaeelie~Lr~EN~~L~~qv~~Lr~ElasiR-------------s~kd~q~~~~QkLLmEE~~Knk~L~eEV   98 (307)
                      .+..+-+...++-+++|+.++++|...+.+|+++++++|             ..+|......++.|+|+..+-++|..++
T Consensus       425 ~~~~~~ve~l~~e~~~L~~~~ee~k~eie~L~~~l~~~~r~~~~~~~~~rei~~~~~~I~~L~~~L~e~~~~ve~L~~~l  504 (652)
T COG2433         425 KKLEETVERLEEENSELKRELEELKREIEKLESELERFRREVRDKVRKDREIRARDRRIERLEKELEEKKKRVEELERKL  504 (652)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            345556667777778888888888888888888888875             4578888899999999999999999999


Q ss_pred             HHHHHHHHhcC
Q 021778           99 ETLQKLLQEGT  109 (307)
Q Consensus        99 ~kLq~Ll~E~~  109 (307)
                      .+|+++..--.
T Consensus       505 ~~l~k~~~lE~  515 (652)
T COG2433         505 AELRKMRKLEL  515 (652)
T ss_pred             HHHHHHHhhhh
Confidence            99998877333

>PRK10884 SH3 domain-containing protein; Provisional

Probab=91.96  E-value=0.96  Score=41.44  Aligned_cols=63  Identities=25%  Similarity=0.334  Sum_probs=42.1

Q ss_pred             HHHHHHHHHhhhhhcCcchhhhHHHHhhHHHHHHHHHHHHHHHHhhhHHHHHHHHhhhhhhhhh
Q 021778            6 KKLYDKYDKLKKKKFSELDNLNKEQELKFTTYVNAADKYIEFLRSENEKLCAQVNNLKSEVDSI   69 (307)
Q Consensus         6 ~KLydKYt~LKkrKlsd~d~lnkeQE~kf~~~~sAaeelie~Lr~EN~~L~~qv~~Lr~Elasi   69 (307)
                      .+|=...++|+ .+|.++++-...+-....+-+.+++..|+.|+.+|++|.+++..+++|+..+
T Consensus        96 p~le~el~~l~-~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~L~~~n~~L~~~l~~~~~~~~~l  158 (206)
T PRK10884         96 PDLENQVKTLT-DKLNNIDNTWNQRTAEMQQKVAQSDSVINGLKEENQKLKNQLIVAQKKVDAA  158 (206)
T ss_pred             HHHHHHHHHHH-HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34455556665 4555555555566666667777788888888888888888877765555444

>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope

Probab=87.94  E-value=3.7  Score=37.79  Aligned_cols=56  Identities=34%  Similarity=0.483  Sum_probs=36.1

Q ss_pred             HHHhhhHHHHHHHHhhhhhhhhhcccchHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHH
Q 021778           47 FLRSENEKLCAQVNNLKSEVDSIRSTSNEQCLHYQKLLMEENQKNKALSEEVETLQKLLQ  106 (307)
Q Consensus        47 ~Lr~EN~~L~~qv~~Lr~ElasiRs~kd~q~~~~QkLLmEE~~Knk~L~eEV~kLq~Ll~  106 (307)
                      .+..+.+.+.+.|..|..|++.+|.....++.+||.|| +-   .=.|+-||-.-.+||.
T Consensus       252 ~~~~~~~~~~~~i~~le~el~~l~~~~~~~~~ey~~Ll-~~---K~~Ld~EIatYR~LLE  307 (312)
T PF00038_consen  252 RLDEEREEYQAEIAELEEELAELREEMARQLREYQELL-DV---KLALDAEIATYRKLLE  307 (312)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HH---HHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHhhhccchhHHHHHHHHHHHHHHHHHHH-HH---HHhHHHHHHHHHHHHh
Confidence            33344444444455666666777777777777777743 32   2357888888888886

They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....

>PF11559 ADIP: Afadin- and alpha -actinin-Binding; InterPro: IPR021622 This family is found in mammals where it is localised at cell-cell adherens junctions [], and in Sch

Probab=87.89  E-value=7.3  Score=32.89  Aligned_cols=64  Identities=30%  Similarity=0.330  Sum_probs=42.9

Q ss_pred             HHHHHHHHHHHhhhHHHHHHHHhhhhhhhhhcccchHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHH
Q 021778           39 NAADKYIEFLRSENEKLCAQVNNLKSEVDSIRSTSNEQCLHYQKLLMEENQKNKALSEEVETLQKLLQ  106 (307)
Q Consensus        39 sAaeelie~Lr~EN~~L~~qv~~Lr~ElasiRs~kd~q~~~~QkLLmEE~~Knk~L~eEV~kLq~Ll~  106 (307)
                      .....=+++|...+++|.+++.++..+++    ....+....++-+-....+.+...+|+.||+..++
T Consensus        62 ~~l~~d~~~l~~~~~rL~~~~~~~ere~~----~~~~~~~~l~~~~~~~~~~~k~~kee~~klk~~~~  125 (151)
T PF11559_consen   62 RRLRSDIERLQNDVERLKEQLEELERELA----SAEEKERQLQKQLKSLEAKLKQEKEELQKLKNQLQ  125 (151)
T ss_pred             HHHHhHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33334444555555555555555555554    44566777788888888889999999999997776

pombe and other fungi where it anchors spindle-pole bodies to spindle microtubules []. It is a coiled-coil structure, and in pombe, it is required for anchoring the minus end of spindle microtubules to the centrosome equivalent, the spindle-pole body. The name ADIP derives from the family being composed of Afadin- and alpha -Actinin-Binding Proteins Localised at Cell-Cell Adherens Junctions.

>PF07798 DUF1640: Protein of unknown function (DUF1640); InterPro: IPR024461 This family consists of uncharacterised proteins

Probab=87.84  E-value=7.4  Score=34.14  Aligned_cols=46  Identities=28%  Similarity=0.334  Sum_probs=33.5

Q ss_pred             CcchhhhHHHHhhHHHHHHHH----HHHHHHHHhhhHHHHHHHHhhhhhh
Q 021778           21 SELDNLNKEQELKFTTYVNAA----DKYIEFLRSENEKLCAQVNNLKSEV   66 (307)
Q Consensus        21 sd~d~lnkeQE~kf~~~~sAa----eelie~Lr~EN~~L~~qv~~Lr~El   66 (307)
                      .|++.....+.+.|-++.+.+    +.-+..|+.++++|..++..|+.+|
T Consensus        47 ~d~e~~~~~~~a~~~eLr~el~~~~k~~~~~lr~~~e~L~~eie~l~~~L   96 (177)
T PF07798_consen   47 SDLENQEYLFKAAIAELRSELQNSRKSEFAELRSENEKLQREIEKLRQEL   96 (177)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            456777778888888877766    3445678888888888877776655

>PLN03188 kinesin-12 family protein; Provisional

Probab=87.81  E-value=3.4  Score=47.08  Aligned_cols=99  Identities=27%  Similarity=0.412  Sum_probs=68.8

Q ss_pred             HHHHHHHHHHHhh--hhhcCc-chhhhHH--------HHhhHHHHHHHH--------HHHHHHHHhhhHHHHHHHHhhhh
Q 021778            4 LYKKLYDKYDKLK--KKKFSE-LDNLNKE--------QELKFTTYVNAA--------DKYIEFLRSENEKLCAQVNNLKS   64 (307)
Q Consensus         4 Ly~KLydKYt~LK--krKlsd-~d~lnke--------QE~kf~~~~sAa--------eelie~Lr~EN~~L~~qv~~Lr~   64 (307)
                      =|+-|-+||..|=  -|++-+ ++++.+-        .|.+|.+.+.|=        |.-.++||+||..|..|   ||.
T Consensus      1115 ~ya~l~ek~~~ll~~hr~i~egi~dvkkaaakag~kg~~~~f~~alaae~s~l~~ereker~~~~~enk~l~~q---lrd 1191 (1320)
T PLN03188       1115 QYADLEEKHIQLLARHRRIQEGIDDVKKAAARAGVRGAESKFINALAAEISALKVEREKERRYLRDENKSLQAQ---LRD 1191 (1320)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHH---Hhh
Confidence            3888999999884  445544 4445443        467888776542        33456899999999999   665


Q ss_pred             hhhhh--------c-ccchHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHH
Q 021778           65 EVDSI--------R-STSNEQCLHYQKLLMEENQKNKALSEEVETLQKLL  105 (307)
Q Consensus        65 Elasi--------R-s~kd~q~~~~QkLLmEE~~Knk~L~eEV~kLq~Ll  105 (307)
                      -..-|        | -.-++-+.-+|+-.|+=.|-|..+..+|+|||+=+
T Consensus      1192 taeav~aagellvrl~eaeea~~~a~~r~~~~eqe~~~~~k~~~klkrkh 1241 (1320)
T PLN03188       1192 TAEAVQAAGELLVRLKEAEEALTVAQKRAMDAEQEAAEAYKQIDKLKRKH 1241 (1320)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            44333        2 34456667788888888888888888888887655

>PRK10884 SH3 domain-containing protein; Provisional

Probab=87.06  E-value=2.7  Score=38.57  Aligned_cols=68  Identities=12%  Similarity=0.187  Sum_probs=46.1

Q ss_pred             HHHHHHHHHHHhhhHHHHHHHHhhhhhhhhhcccchHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHH
Q 021778           39 NAADKYIEFLRSENEKLCAQVNNLKSEVDSIRSTSNEQCLHYQKLLMEENQKNKALSEEVETLQKLLQ  106 (307)
Q Consensus        39 sAaeelie~Lr~EN~~L~~qv~~Lr~ElasiRs~kd~q~~~~QkLLmEE~~Knk~L~eEV~kLq~Ll~  106 (307)
                      --+.+.+..|+.|.+.|.+++++++++.....+...++++...+..-+=...|+.|.+|+..+++=++
T Consensus        89 p~~~~rlp~le~el~~l~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~L~~~n~~L~~~l~~~~~~~~  156 (206)
T PRK10884         89 PSLRTRVPDLENQVKTLTDKLNNIDNTWNQRTAEMQQKVAQSDSVINGLKEENQKLKNQLIVAQKKVD  156 (206)
T ss_pred             ccHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34556667777777777777777777766666666666666666655555667777777777766544

>smart00338 BRLZ basic region leucin zipper

Probab=86.87  E-value=1.4  Score=32.58  Aligned_cols=36  Identities=22%  Similarity=0.505  Sum_probs=30.8

Q ss_pred             HHHHHHHHHHHHHHHhhhHHHHHHHHhhhhhhhhhc
Q 021778           35 TTYVNAADKYIEFLRSENEKLCAQVNNLKSEVDSIR   70 (307)
Q Consensus        35 ~~~~sAaeelie~Lr~EN~~L~~qv~~Lr~ElasiR   70 (307)
                      ..|+...+.-+++|..+|..|..+|..|+.|++.++
T Consensus        25 k~~~~~Le~~~~~L~~en~~L~~~~~~l~~e~~~lk   60 (65)
T smart00338       25 KAEIEELERKVEQLEAENERLKKEIERLRRELEKLK   60 (65)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            467888899999999999999999999877777665

>PF06548 Kinesin-related: Kinesin-related; InterPro: IPR010544 This entry represents a domain within kinesin-related proteins from higher plants

Probab=84.83  E-value=8.4  Score=39.98  Aligned_cols=98  Identities=27%  Similarity=0.442  Sum_probs=64.8

Q ss_pred             HHHHHHHHHHhhh--hhcCc-chhhhHH--------HHhhHHHHHHH------H--HHHHHHHHhhhHHHHHHHHhhhhh
Q 021778            5 YKKLYDKYDKLKK--KKFSE-LDNLNKE--------QELKFTTYVNA------A--DKYIEFLRSENEKLCAQVNNLKSE   65 (307)
Q Consensus         5 y~KLydKYt~LKk--rKlsd-~d~lnke--------QE~kf~~~~sA------a--eelie~Lr~EN~~L~~qv~~Lr~E   65 (307)
                      |+-|-+||..|=.  |++-+ ++++.+.        -+.+|.+-..|      +  +.-...||+||..|..|   ||.-
T Consensus       346 YadLqEk~~~Ll~~Hr~i~egI~dVKkaAakAg~kG~~~rF~~slaaEiSalr~erEkEr~~l~~eNk~L~~Q---LrDT  422 (488)
T PF06548_consen  346 YADLQEKHNDLLARHRRIMEGIEDVKKAAAKAGVKGAESRFINSLAAEISALRAEREKERRFLKDENKGLQIQ---LRDT  422 (488)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH---HHhH
Confidence            8888899998844  44443 3334332        36788887655      1  23345889999999999   5554


Q ss_pred             hhhh--------c-ccchHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHH
Q 021778           66 VDSI--------R-STSNEQCLHYQKLLMEENQKNKALSEEVETLQKLL  105 (307)
Q Consensus        66 lasi--------R-s~kd~q~~~~QkLLmEE~~Knk~L~eEV~kLq~Ll  105 (307)
                      ..-|        | -.-++-..-+|+-+|.=.|.|..+.-+|+||++=+
T Consensus       423 AEAVqAagEllvrl~eaeea~~~a~~r~~~~eqe~ek~~kqiekLK~kh  471 (488)
T PF06548_consen  423 AEAVQAAGELLVRLREAEEAASVAQERAMDAEQENEKAKKQIEKLKRKH  471 (488)
T ss_pred             HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4332        2 33455566678888887788888888888877643

Many proteins containing this domain also contain the IPR001752 from INTERPRO domain. Kinesins are ATP-driven microtubule motor proteins that produce directed force []. Some family members are associated with the phragmoplast, a structure composed mainly of microtubules that executes cytokinesis in higher plants [].

>PF00170 bZIP_1: bZIP transcription factor cAMP response element binding (CREB) protein signature fos transforming protein signature jun transcription factor signature; InterPro: IPR011616 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotic are proteins that contain a basic region mediating sequence-specific DNA-binding followed by a leucine zipper region (see IPR002158 from INTERPRO) required for dimerization

Probab=82.75  E-value=3.2  Score=30.68  Aligned_cols=39  Identities=31%  Similarity=0.517  Sum_probs=32.5

Q ss_pred             hhHHHHHHHHHHHHHHHHhhhHHHHHHHHhhhhhhhhhc
Q 021778           32 LKFTTYVNAADKYIEFLRSENEKLCAQVNNLKSEVDSIR   70 (307)
Q Consensus        32 ~kf~~~~sAaeelie~Lr~EN~~L~~qv~~Lr~ElasiR   70 (307)
                      .+...++...++-+..|..+|+.|..++..|..+++.++
T Consensus        22 ~RKk~~~~~Le~~~~~L~~en~~L~~~~~~L~~~~~~L~   60 (64)
T PF00170_consen   22 QRKKQYIEELEEKVEELESENEELKKELEQLKKEIQSLK   60 (64)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            356788889999999999999999999988877776654

; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 2H7H_B 2OQQ_B 1S9K_E 1JNM_A 1JUN_A 1FOS_H 1A02_J 1T2K_C 1CI6_A 1DH3_C ....

>PF04420 CHD5: CHD5-like protein; InterPro: IPR007514 Members of this family are probably coiled-coil proteins that are similar to the CHD5 (Congenital heart disease 5) protein

Probab=82.73  E-value=3.3  Score=36.17  Aligned_cols=57  Identities=30%  Similarity=0.432  Sum_probs=43.8

Q ss_pred             HHHhhhHHHHHHHHhhhhhhhhhcccchHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHhcC
Q 021778           47 FLRSENEKLCAQVNNLKSEVDSIRSTSNEQCLHYQKLLMEENQKNKALSEEVETLQKLLQEGT  109 (307)
Q Consensus        47 ~Lr~EN~~L~~qv~~Lr~ElasiRs~kd~q~~~~QkLLmEE~~Knk~L~eEV~kLq~Ll~E~~  109 (307)
                      ..-.+..+|+.++.+|+.|+.+|  ...||.|+|=|+    +||=..+++|++++++-+....
T Consensus        37 ~~~~~~~~l~~Ei~~l~~E~~~i--S~qDeFAkwaKl----~Rk~~kl~~el~~~~~~~~~~~   93 (161)
T PF04420_consen   37 KSSKEQRQLRKEILQLKRELNAI--SAQDEFAKWAKL----NRKLDKLEEELEKLNKSLSSEK   93 (161)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHTTS---TTTSHHHHHHH----HHHHHHHHHHHHHHHHHHHHTC
T ss_pred             cccHHHHHHHHHHHHHHHHHHcC--CcHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHH
Confidence            34556667777777787888777  344699999997    8888889999999998887544

The exact molecular function of these eukaryotic proteins is unknown.; PDB: 3SJA_H 3SJC_D 3SJB_D 3ZS8_D 3VLC_E.

>PF05010 TACC: Transforming acidic coiled-coil-containing protein (TACC); InterPro: IPR007707 This family contains the proteins TACC 1, 2 and 3, found concentrated in the centrosomes of eukaryotes which may play a conserved role in organising centrosomal microtubules

Probab=81.08  E-value=22  Score=33.00  Aligned_cols=91  Identities=24%  Similarity=0.430  Sum_probs=55.8

Q ss_pred             ChhHHHHHHHHHHHhhhhhcCcchhhhHHHHhhHHHHHHHHHHHHHHHHhhhHHHH-------HHHHhhhhhhhhhcccc
Q 021778            1 MESLYKKLYDKYDKLKKKKFSELDNLNKEQELKFTTYVNAADKYIEFLRSENEKLC-------AQVNNLKSEVDSIRSTS   73 (307)
Q Consensus         1 ME~Ly~KLydKYt~LKkrKlsd~d~lnkeQE~kf~~~~sAaeelie~Lr~EN~~L~-------~qv~~Lr~ElasiRs~k   73 (307)
                      ||.-|+.||.+|.++|.-    ++++ +.-|..++   ..+++++..|+.+.++..       ++++.--.|++.+|+.-
T Consensus        88 ~E~sfsdl~~ryek~K~v----i~~~-k~NEE~Lk---k~~~ey~~~l~~~eqry~aLK~hAeekL~~ANeei~~v~~~~  159 (207)
T PF05010_consen   88 LEKSFSDLHKRYEKQKEV----IEGY-KKNEETLK---KCIEEYEERLKKEEQRYQALKAHAEEKLEKANEEIAQVRSKH  159 (207)
T ss_pred             HHhhHHHHHHHHHHHHHH----HHHH-HHhHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            578899999999999864    2222 22333333   333344444433333322       23334556788888888


Q ss_pred             hHHHHHHHHHHHHHHhhhhhhHHHHH
Q 021778           74 NEQCLHYQKLLMEENQKNKALSEEVE   99 (307)
Q Consensus        74 d~q~~~~QkLLmEE~~Knk~L~eEV~   99 (307)
                      ..+++..|-.|--+.-+...|.+.++
T Consensus       160 ~~e~~aLqa~lkk~e~~~~SLe~~Le  185 (207)
T PF05010_consen  160 QAELLALQASLKKEEMKVQSLEESLE  185 (207)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            88888888888666666666665554

The human TACC proteins have been linked to cancer and TACC2 has been identified as a possible tumour suppressor (AZU-1) [].

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	307
4emc_A	190	Monopolin complex subunit CSM1; RWD domain, kineto	96.49
2xv5_A	74	Lamin-A/C; structural protein, intermediate filame	91.8
3n4s_A	116	Monopolin complex subunit CSM1; meiosis, rDNA, rep	91.4
3a2a_A	58	Voltage-gated hydrogen channel 1; voltage-gated pr	89.01
1x8y_A	86	Lamin A/C; structural protein, intermediate filame	88.68
1jnm_A	62	Proto-oncogene C-JUN; BZIP, protein-DNA complex, t	87.9
1t2k_D	61	Cyclic-AMP-dependent transcription factor ATF-2; p	87.87
3c3g_A	33	Alpha/beta peptide with the GCN4-PLI SIDE chain S	87.32
1gk4_A	84	Vimentin; intermediate filament, dimer, parallel c	87.18
3m48_A	33	General control protein GCN4; leucine zipper, synt	86.41
3c3f_A	34	Alpha/beta peptide with the GCN4-PLI SIDE chain S	86.27
1uo4_A	34	General control protein GCN4; four helix bundle, c	85.73
2oxj_A	34	Hybrid alpha/beta peptide based on the GCN4-P1 Se	84.56
2bni_A	34	General control protein GCN4; four helix bundle, a	83.98
2ve7_A	315	Kinetochore protein HEC1, kinetochore protein SPC;	83.45
3mov_A	95	Lamin-B1; LMNB1, B-type lamins, intermediate filam	83.38
1kd8_B	36	GABH BLL, GCN4 acid base heterodimer base-D12LA16L	83.25
1ci6_A	63	Transcription factor ATF-4; BZIP; 2.60A {Homo sapi	83.09
3i00_A	120	HIP-I, huntingtin-interacting protein 1; transcrip	82.95
2wq1_A	33	General control protein GCN4; TAA, nucleus, coiled	82.86
2hy6_A	34	General control protein GCN4; protein design, para	82.4
1go4_E	100	MAD1 (mitotic arrest deficient)-like 1; mitotic sp	82.08
3ol1_A	119	Vimentin; structural genomics, PSI-2, protein stru	82.06
3qh9_A	81	Liprin-beta-2; coiled-coil, dimerization, structur	81.87
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	81.75
3vmx_A	48	Voltage-gated hydrogen channel 1; coiled-coil, ION	81.74
3tnu_A	131	Keratin, type I cytoskeletal 14; coiled-coil, stru	81.52
1gk6_A	59	Vimentin; intermediate filament, dimer, parallel c	81.06
1hjb_A	87	Ccaat/enhancer binding protein beta; transcription	80.34
1dh3_A	55	Transcription factor CREB; protein-DNA complex, tr	80.3
3tnu_B	129	Keratin, type II cytoskeletal 5; coiled-coil, stru	80.24
1kd8_A	36	GABH AIV, GCN4 acid base heterodimer acid-D12IA16V	80.22
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	80.05

>4emc_A Monopolin complex subunit CSM1; RWD domain, kinetochore-binding, kinetoch replication-replication complex; 3.05A {Saccharomyces cerevisiae} PDB: 3n7n_A 3n4x_A

Probab=96.49  E-value=0.022  Score=50.87  Aligned_cols=92  Identities=18%  Similarity=0.352  Sum_probs=69.4

Q ss_pred             hhHHHHHHHHHhcCccccccCCCceEEEEEeec--CC--------ceeEEEeeecCCCccceeeEeeecc-------hhh
Q 021778          214 NCLFQALIEYLLGMKLSPYHESEGRCVSALHQS--TG--------YSFSLTWVKSKDGEEFELLYRVLSL-------GTL  276 (307)
Q Consensus       214 ~~~fq~L~e~llgMKlS~~~~~e~~cisa~H~s--SG--------ysFsLTwv~~~~gee~EllY~~~SL-------GTl  276 (307)
                      .++.-=|++.|-|.++--..+++.=-+--+-|+  .|        .-|-|..++.. .+++|+-|.+.=.       ..|
T Consensus        71 i~i~~DL~e~LTGl~V~~~~ed~~~~~FDc~Qtg~nG~~~~~~~tl~ykL~i~k~~-~~~~e~~Y~P~l~~r~~ee~r~L  149 (190)
T 4emc_A           71 SEVIKDLYEYLCNVRVHKSYEDDSGLWFDISQGTHSGGSSDDYSIMDYKLGFVKGQ-AQVTEVIYAPVLKQRSTEELYSL  149 (190)
T ss_dssp             HHHHHHHHHHHHSEECCCCCCCSSCEEEEEEESCCC-----CCCCCCEEEEEC------CCEEEEEECCSSSCHHHHHHH
T ss_pred             hhHHHHHHHHccCcEEEEEEEcCCCeEEEEEecCCCCCcCCcceEEEEEEeeccCC-CCCceEEEeccccccchHHHHHH
Confidence            466667888888888877777777666666666  46        66888887754 3468999998764       456


Q ss_pred             hhhhhhhhhhhhcccCCcchHHHHhhhhcc
Q 021778          277 ERVALGWMMDEIMFSTSMCPIFFERISGVI  306 (307)
Q Consensus       277 eRvApeWMRe~I~FS~~McpvFFeRis~Vi  306 (307)
                      -.+-|++|.++|+|.-...+-||-||.+-+
T Consensus       150 ~~~LPdYL~d~ltFP~~~l~qFY~Kv~kaL  179 (190)
T 4emc_A          150 QSKLPEYLFETLSFPLSSLNQFYNKIAKSL  179 (190)
T ss_dssp             HHHSCGGGGSCEEEETTHHHHHHHHHHHTT
T ss_pred             HHhCcHHhhceeeecHHHHHHHHHHHHHHh
Confidence            778899999999999999999999998865

>2xv5_A Lamin-A/C; structural protein, intermediate filaments, nuclear membrane LEFT-handed coiled coil, right-handed coiled coil; HET: MSE; 2.40A {Homo sapiens}

Probab=91.80  E-value=0.15  Score=39.09  Aligned_cols=55  Identities=27%  Similarity=0.325  Sum_probs=47.4

Q ss_pred             HHhhhHHHHHHHHhhhhhhhhhcccchHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHH
Q 021778           48 LRSENEKLCAQVNNLKSEVDSIRSTSNEQCLHYQKLLMEENQKNKALSEEVETLQKLLQ  106 (307)
Q Consensus        48 Lr~EN~~L~~qv~~Lr~ElasiRs~kd~q~~~~QkLLmEE~~Knk~L~eEV~kLq~Ll~  106 (307)
                      |..|.+.+..+|.+|..+|+.+|.++..|+.+||.||=   -| -.|+-||..-.+||.
T Consensus         3 l~~e~~~~~~~i~~lE~eL~~~r~e~~~ql~EYq~Lln---iK-l~Le~EIatYRkLLE   57 (74)
T 2xv5_A            3 SARERDTSRRLLAEKEREMAEMRARMQQQLDEYQELLD---IK-LALDMEIHAYRKLLE   57 (74)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HH-HHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HH-HHHHHHHHHHHHHHh
Confidence            56788899999999999999999999999999998872   11 257899999999997

>3n4s_A Monopolin complex subunit CSM1; meiosis, rDNA, replication; HET: 1PE; 2.35A {Saccharomyces cerevisiae} PDB: 3n4r_A*

Probab=91.40  E-value=0.38  Score=40.13  Aligned_cols=91  Identities=20%  Similarity=0.368  Sum_probs=70.2

Q ss_pred             hHHHHHHHHHhcCccccccCCCceEEEEEeecC--C--------ceeEEEeeecCCCccceeeEeeecch-------hhh
Q 021778          215 CLFQALIEYLLGMKLSPYHESEGRCVSALHQST--G--------YSFSLTWVKSKDGEEFELLYRVLSLG-------TLE  277 (307)
Q Consensus       215 ~~fq~L~e~llgMKlS~~~~~e~~cisa~H~sS--G--------ysFsLTwv~~~~gee~EllY~~~SLG-------Tle  277 (307)
                      -+.-=|+|.|-|.++--..+++.=-+--+-|++  |        .-|.|...+.. .+++|.-|.+.=..       .|-
T Consensus         7 ~i~~DL~e~LtGL~V~~~~ed~~~~~FD~~Qtg~nG~~~~d~~tl~ykL~i~k~~-~~~~e~~Y~P~l~~~~~e~~r~L~   85 (116)
T 3n4s_A            7 EVIKDLYEYLCNVRVHKSYEDDSGLWFDISQGTHSGGSSDDYSIMDYKLGFVKGQ-AQVTEVIYAPVLKQRSTEELYSLQ   85 (116)
T ss_dssp             HHHHHHHHHHHSEEEEEEEEC-CCEEEEEEECC-------CCCCEEEEEEEC-------CEEEEEEECTTCCHHHHHHHH
T ss_pred             HhHHHHHHHccCcEEEEEEEcCCCeEEEEEEcCcCCCcCCcceEEEEEEEeccCC-cCCceEEEeccccccchhHHHHHH
Confidence            345568999999999888888877777777875  4        78999988855 35689999987554       567


Q ss_pred             hhhhhhhhhhhcccCCcchHHHHhhhhcc
Q 021778          278 RVALGWMMDEIMFSTSMCPIFFERISGVI  306 (307)
Q Consensus       278 RvApeWMRe~I~FS~~McpvFFeRis~Vi  306 (307)
                      .+-|++|-++|+|--...+-||-||.+-+
T Consensus        86 ~~LPdYL~d~lsFP~~~l~qFY~Kv~kaL  114 (116)
T 3n4s_A           86 SKLPEYLFETLSFPLSSLNQFYNKIAKSL  114 (116)
T ss_dssp             TTSCGGGGSCEEEEGGGHHHHHHHHHHHH
T ss_pred             HHCcHhheeeEEecHHHHHHHHHHHHHHh
Confidence            78899999999999999999999998754

>3a2a_A Voltage-gated hydrogen channel 1; voltage-gated proton channel, alternative splicing, coiled C transport, ionic channel, membrane, transmembrane; 2.00A {Homo sapiens}

Probab=89.01  E-value=0.79  Score=34.21  Aligned_cols=43  Identities=28%  Similarity=0.487  Sum_probs=33.1

Q ss_pred             HHHHHHHHHHhhhHHHHHHHHhhhhhhhhhcccchHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHh
Q 021778           40 AADKYIEFLRSENEKLCAQVNNLKSEVDSIRSTSNEQCLHYQKLLMEENQKNKALSEEVETLQKLLQE  107 (307)
Q Consensus        40 Aaeelie~Lr~EN~~L~~qv~~Lr~ElasiRs~kd~q~~~~QkLLmEE~~Knk~L~eEV~kLq~Ll~E  107 (307)
                      .++.-+..|+.-|..|.++|++|           +.+|++-              +.||+||-+||+.
T Consensus         8 Rse~q~~kLKq~n~~L~~kv~~L-----------e~~c~e~--------------eQEieRL~~LLkq   50 (58)
T 3a2a_A            8 RSERQLLRLKQMNVQLAAKIQHL-----------EFSCSEK--------------EQEIERLNKLLRQ   50 (58)
T ss_dssp             ---CHHHHHHHHHHHHHHHHHHH-----------HHHHHHH--------------HHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHH--------------HHHHHHHHHHHHH
Confidence            46667889999999999999887           4556432              6799999999984

>1x8y_A Lamin A/C; structural protein, intermediate filament protein; 2.20A {Homo sapiens} SCOP: h.1.20.1 PDB: 3v5b_A 3v4w_A 3v4q_A

Probab=88.68  E-value=0.73  Score=35.58  Aligned_cols=60  Identities=27%  Similarity=0.319  Sum_probs=46.9

Q ss_pred             HHHHHHHhhhHHHHHHHHhhhhhhhhhcccchHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHH
Q 021778           43 KYIEFLRSENEKLCAQVNNLKSEVDSIRSTSNEQCLHYQKLLMEENQKNKALSEEVETLQKLLQ  106 (307)
Q Consensus        43 elie~Lr~EN~~L~~qv~~Lr~ElasiRs~kd~q~~~~QkLLmEE~~Knk~L~eEV~kLq~Ll~  106 (307)
                      ++=..+..+.+.+..++.+|..+|+.+|.++..++.+||.||=   -| -.|+-||-.-.+||.
T Consensus        21 e~E~~~~~~l~~~q~~i~~lE~el~~~r~e~~~ql~EYq~Lln---vK-~~Le~EIatYRkLLE   80 (86)
T 1x8y_A           21 DLEDSLARERDTSRRLLAEKEREMAEMRARMQQQLDEYQELLD---IK-LALDMEIHAYRKLLE   80 (86)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HH-HHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HH-HhhHHHHHHHHHHHc
Confidence            3333556677778888888999999999999999999998871   11 157889999999886

>1jnm_A Proto-oncogene C-JUN; BZIP, protein-DNA complex, transcription/DNA complex; 2.20A {Homo sapiens} SCOP: h.1.3.1 PDB: 1fos_F 2h7h_A 1t2k_C 1a02_J* 1s9k_E 1jun_A

Probab=87.90  E-value=0.82  Score=33.11  Aligned_cols=36  Identities=17%  Similarity=0.382  Sum_probs=30.5

Q ss_pred             HHHHHHHHHHHHHHHhhhHHHHHHHHhhhhhhhhhc
Q 021778           35 TTYVNAADKYIEFLRSENEKLCAQVNNLKSEVDSIR   70 (307)
Q Consensus        35 ~~~~sAaeelie~Lr~EN~~L~~qv~~Lr~ElasiR   70 (307)
                      ..+.+..++-++.|..+|+.|..+|..|+.|++.++
T Consensus        21 k~~~~~Le~~v~~L~~~n~~L~~~v~~L~~e~~~Lk   56 (62)
T 1jnm_A           21 LERIARLEEKVKTLKAQNSELASTANMLREQVAQLK   56 (62)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            356677788889999999999999999988887776

>1t2k_D Cyclic-AMP-dependent transcription factor ATF-2; protein DNA complex, transcription/DNA complex; 3.00A {Homo sapiens} SCOP: h.1.3.1

Probab=87.87  E-value=0.75  Score=33.12  Aligned_cols=35  Identities=31%  Similarity=0.413  Sum_probs=28.5

Q ss_pred             HHHHHHHHHHHHHHhhhHHHHHHHHhhhhhhhhhc
Q 021778           36 TYVNAADKYIEFLRSENEKLCAQVNNLKSEVDSIR   70 (307)
Q Consensus        36 ~~~sAaeelie~Lr~EN~~L~~qv~~Lr~ElasiR   70 (307)
                      .+.+..++-+++|..+|..|..+|..|+.|++.++
T Consensus        22 ~~~~~Le~~~~~L~~~n~~L~~~i~~L~~e~~~Lk   56 (61)
T 1t2k_D           22 VWVQSLEKKAEDLSSLNGQLQSEVTLLRNEVAQLK   56 (61)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            56777788888999999999999998877776554

>3c3g_A Alpha/beta peptide with the GCN4-PLI SIDE chain S AN (alpha-alpha-beta) backbone; helix bundle, foldamer, unknown function protein; HET: HMR B3Q B3D B3E B3L BIL B3K BAL GOL; 1.80A {Synthetic} PDB: 3heu_A* 3het_A* 3hev_A* 3hew_A* 3hey_A* 3hex_A* 3c3h_A*

Probab=87.32  E-value=0.66  Score=31.31  Aligned_cols=20  Identities=20%  Similarity=0.300  Sum_probs=15.8

Q ss_pred             HhhhhhhHHHHHHHHHHHHh
Q 021778           88 NQKNKALSEEVETLQKLLQE  107 (307)
Q Consensus        88 ~~Knk~L~eEV~kLq~Ll~E  107 (307)
                      ..+|.+|..||.||+.|+.+
T Consensus        13 l~~~~~Le~EV~RLk~lL~~   32 (33)
T 3c3g_A           13 XSKXYHXENXLARIKXLLXE   32 (33)
T ss_dssp             HHHHHHHHHHHHHHHHHHC-
T ss_pred             HHHhhHHHHHHHHHHHHHcc
Confidence            35678889999999999874

>1gk4_A Vimentin; intermediate filament, dimer, parallel coiled coil, heptad repeat, stutter; 2.3A {Homo sapiens} SCOP: h.1.20.1

Probab=87.18  E-value=1  Score=34.44  Aligned_cols=60  Identities=27%  Similarity=0.366  Sum_probs=46.6

Q ss_pred             HHHHHHHhhhHHHHHHHHhhhhhhhhhcccchHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHH
Q 021778           43 KYIEFLRSENEKLCAQVNNLKSEVDSIRSTSNEQCLHYQKLLMEENQKNKALSEEVETLQKLLQ  106 (307)
Q Consensus        43 elie~Lr~EN~~L~~qv~~Lr~ElasiRs~kd~q~~~~QkLLmEE~~Knk~L~eEV~kLq~Ll~  106 (307)
                      +.=.+...+...+...+.+|..+|+.+|.++..++.+||.||=   -| -.|+-||-.-.+||.
T Consensus        19 e~e~~~~~~~~~~q~~i~~lE~eL~~~r~e~~~q~~EYq~Lln---vK-~~Ld~EIatYRkLLE   78 (84)
T 1gk4_A           19 EMEENFAVEAANYQDTIGRLQDEIQNMKEEMARHLREYQDLLN---VK-MALDIEIATYRKLLE   78 (84)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HH-HHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HH-HhhHHHHHHHHHHHc
Confidence            3334455566677788888999999999999999999998871   11 157889999999986

>3m48_A General control protein GCN4; leucine zipper, synthetic peptide, alpha helix, activa amino-acid biosynthesis, DNA-binding, nucleus; 1.45A {Synthetic} PDB: 3i1g_A 2ahp_A* 2o7h_A

Probab=86.41  E-value=0.67  Score=31.28  Aligned_cols=19  Identities=47%  Similarity=0.569  Sum_probs=14.2

Q ss_pred             hhhhhhHHHHHHHHHHHHh
Q 021778           89 QKNKALSEEVETLQKLLQE  107 (307)
Q Consensus        89 ~Knk~L~eEV~kLq~Ll~E  107 (307)
                      .+|.+|..||.||+.|+.+
T Consensus        14 ~~n~~Le~EV~RLk~Ll~~   32 (33)
T 3m48_A           14 SKNWNLENEVARLKKLVGE   32 (33)
T ss_dssp             HHHHHHHHHHHHHHHHTTC
T ss_pred             HHhHHHHHHHHHHHHHhhc
Confidence            3566778888888888764

>3c3f_A Alpha/beta peptide with the GCN4-PLI SIDE chain S AN (alpha-alpha-alpha-beta) backbone...; helix bundle, foldamer, unknown function, de novo protein; HET: B3K B3D B3E BIL B3L BAL; 2.00A {Synthetic} SCOP: h.1.3.1

Probab=86.27  E-value=0.81  Score=31.06  Aligned_cols=19  Identities=26%  Similarity=0.274  Sum_probs=15.1

Q ss_pred             hhhhhhHHHHHHHHHHHHh
Q 021778           89 QKNKALSEEVETLQKLLQE  107 (307)
Q Consensus        89 ~Knk~L~eEV~kLq~Ll~E  107 (307)
                      .+|.+|..||.||+.|+.+
T Consensus        15 ~~~~~Le~EV~RLk~ll~~   33 (34)
T 3c3f_A           15 SXLYHXENEXARIXKLLXE   33 (34)
T ss_dssp             HHHHHHHHHHHHHHHHHC-
T ss_pred             hhhhHHHHHHHHHHHHHhc
Confidence            4677889999999999874

>1uo4_A General control protein GCN4; four helix bundle, cavity, iodobenzene; 1.70A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 1uo3_A 1unt_A 1uo5_A 1unu_A 1unv_A 1uo1_A 2ccf_A 2cce_A 1unx_A 1unw_A 1w5j_A* 1w5k_A* 1u9f_A* 3f86_A* 3f87_A* 3hez_A* 3c3f_A*

Probab=85.73  E-value=0.82  Score=31.03  Aligned_cols=20  Identities=30%  Similarity=0.363  Sum_probs=16.3

Q ss_pred             HhhhhhhHHHHHHHHHHHHh
Q 021778           88 NQKNKALSEEVETLQKLLQE  107 (307)
Q Consensus        88 ~~Knk~L~eEV~kLq~Ll~E  107 (307)
                      ..+|.+|..||.||++||.+
T Consensus        14 l~~n~~Le~EV~RLk~LL~~   33 (34)
T 1uo4_A           14 LSKLYHIENELARIKKLLGE   33 (34)
T ss_dssp             HHHHHHHHHHHHHHHHHTTC
T ss_pred             HHhhHHHHHHHHHHHHHHcc
Confidence            35677889999999999864

>2oxj_A Hybrid alpha/beta peptide based on the GCN4-P1 Se heptad positions B and F substituted...; helix bundle, foldamer, unknown function; HET: B3K B3D B3E B3S B3Y B3X B3A BAL; 2.00A {Synthetic} PDB: 2oxk_A*

Probab=84.56  E-value=1.1  Score=30.34  Aligned_cols=19  Identities=42%  Similarity=0.557  Sum_probs=14.9

Q ss_pred             hhhhhhHHHHHHHHHHHHh
Q 021778           89 QKNKALSEEVETLQKLLQE  107 (307)
Q Consensus        89 ~Knk~L~eEV~kLq~Ll~E  107 (307)
                      .+|++|..||.||+.|+.+
T Consensus        15 ~~n~~Le~eV~rLk~ll~~   33 (34)
T 2oxj_A           15 XKNXHLEXEVXRLKXLVXE   33 (34)
T ss_dssp             HHHHHHHHHHHHHHHHHSC
T ss_pred             HhhhhHHHHHHHHHHHHhc
Confidence            4677788888888888864

>2bni_A General control protein GCN4; four helix bundle, antiparallel four helix bundle acyl transferase; HET: TYZ; 1.5A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 2ccn_A 1w5k_A* 2ccf_A 2cce_A 1w5j_A* 1uo2_A 1gcl_A 1uo1_A 1unv_A 1uo0_A 1unt_A 1uo5_A 1unz_A 1unx_A 1unu_A 1unw_A 1uo4_A 1uo3_A 1uny_A 1u9f_A* ...

Probab=83.98  E-value=1.1  Score=30.51  Aligned_cols=20  Identities=30%  Similarity=0.463  Sum_probs=14.9

Q ss_pred             HhhhhhhHHHHHHHHHHHHh
Q 021778           88 NQKNKALSEEVETLQKLLQE  107 (307)
Q Consensus        88 ~~Knk~L~eEV~kLq~Ll~E  107 (307)
                      ..+|.+|..||.||+.|+.+
T Consensus        14 l~~~~~L~~EV~RLk~lL~~   33 (34)
T 2bni_A           14 LSKGHHICNELARIKKLLGE   33 (34)
T ss_dssp             HHHHHHHHHHHHHHHHHC--
T ss_pred             HHccHHHHHHHHHHHHHhcc
Confidence            35677889999999999875

>2ve7_A Kinetochore protein HEC1, kinetochore protein SPC; mitosis, centromere, cell cycle, microtubule, C division, calponin homology; 2.88A {Homo sapiens} PDB: 3iz0_C*

Probab=83.45  E-value=1  Score=41.79  Aligned_cols=50  Identities=24%  Similarity=0.335  Sum_probs=41.1

Q ss_pred             CcchhhhHHHHhhHHHHHHHHHHHHHHHHhhhHHHHHHHHhhhhhhhhhc
Q 021778           21 SELDNLNKEQELKFTTYVNAADKYIEFLRSENEKLCAQVNNLKSEVDSIR   70 (307)
Q Consensus        21 sd~d~lnkeQE~kf~~~~sAaeelie~Lr~EN~~L~~qv~~Lr~ElasiR   70 (307)
                      .+++.+..+-..+|.....+...-|+.|+.+|++|.+++.+|+.+..+.+
T Consensus       163 d~~~~~~~e~~~~~~~~~n~~~~eie~L~~~~~~L~eEi~~Le~~~e~~~  212 (315)
T 2ve7_A          163 DSFDEMNAELQSKLKDLFNVDAFKLESLEAKNRALNEQIARLEQERSTAN  212 (315)
T ss_dssp             SCCHHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             cchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence            56788888888888888877788899999999999999999866654443

>1kd8_B GABH BLL, GCN4 acid base heterodimer base-D12LA16L; coiled coil heterodimer, de novo protein; 1.90A {Synthetic} SCOP: h.1.3.1 PDB: 1kd9_B 1kdd_B

Probab=83.25  E-value=1.6  Score=29.96  Aligned_cols=19  Identities=32%  Similarity=0.221  Sum_probs=14.4

Q ss_pred             hhhhhhHHHHHHHHHHHHh
Q 021778           89 QKNKALSEEVETLQKLLQE  107 (307)
Q Consensus        89 ~Knk~L~eEV~kLq~Ll~E  107 (307)
                      .++.+|..||.||+.|+.+
T Consensus        15 ~~~~~Le~eV~RLk~ll~~   33 (36)
T 1kd8_B           15 SKLWHLKNKVARLKKKNAE   33 (36)
T ss_dssp             HHHHHHHHHHHHHHHHHHH
T ss_pred             HHhHHHHHHHHHHHHHhcc
Confidence            4566778888888888764

>1ci6_A Transcription factor ATF-4; BZIP; 2.60A {Homo sapiens} SCOP: h.1.3.1

Probab=83.09  E-value=1.7  Score=31.79  Aligned_cols=34  Identities=21%  Similarity=0.215  Sum_probs=24.8

Q ss_pred             HHHHHHHHHHHHHHhhhHHHHHHHHhhhhhhhhh
Q 021778           36 TYVNAADKYIEFLRSENEKLCAQVNNLKSEVDSI   69 (307)
Q Consensus        36 ~~~sAaeelie~Lr~EN~~L~~qv~~Lr~Elasi   69 (307)
                      ...+..+.-++.|..+|..|..+|..|+.|++-+
T Consensus        23 ~~~~~le~~~~~L~~~N~~L~~~i~~L~~E~~~L   56 (63)
T 1ci6_A           23 AEQEALTGECKELEKKNEALKERADSLAKEIQYL   56 (63)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4556667777888999999999988875554433

>3i00_A HIP-I, huntingtin-interacting protein 1; transcription; 2.30A {Homo sapiens} PDB: 2qa7_A

Probab=82.95  E-value=5.1  Score=33.05  Aligned_cols=65  Identities=25%  Similarity=0.272  Sum_probs=40.1

Q ss_pred             HHHHHHHHhhhHHHHHHHHhhhhhhhhhcccchHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHH
Q 021778           42 DKYIEFLRSENEKLCAQVNNLKSEVDSIRSTSNEQCLHYQKLLMEENQKNKALSEEVETLQKLLQ  106 (307)
Q Consensus        42 eelie~Lr~EN~~L~~qv~~Lr~ElasiRs~kd~q~~~~QkLLmEE~~Knk~L~eEV~kLq~Ll~  106 (307)
                      +.+|+||+.|++.|+..+..+..|-+.+=.+...++...+..|-+=..-....-.|.+.|+..++
T Consensus        14 D~~Ie~Lkreie~lk~ele~l~~E~q~~v~ql~~~i~~Le~eL~e~r~~~q~a~~e~e~Lr~e~~   78 (120)
T 3i00_A           14 DHLIERLYREISGLKAQLENMKTESQRVVLQLKGHVSELEADLAEQQHLRQQAADDCEFLRAELD   78 (120)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            35899999999999999888877776665555555555555554332222222344444444444

>2wq1_A General control protein GCN4; TAA, nucleus, coiled coil, DNA-binding, protein export, ION coordination, polar core residues; 1.08A {Saccharomyces cerevisiae} PDB: 2wq0_A 2wq2_A 2wq3_A 2wpz_A 2wpy_A 1ij0_A 1ij1_A 1gcm_A 1rb5_A 1rb6_A 1rb1_A 1rb4_A 1swi_A 3k7z_A 1zii_A 1zij_A 1ij2_A 1ij3_A 1zil_A 1zim_A ...

Probab=82.86  E-value=1.4  Score=29.72  Aligned_cols=20  Identities=25%  Similarity=0.213  Sum_probs=15.9

Q ss_pred             HhhhhhhHHHHHHHHHHHHh
Q 021778           88 NQKNKALSEEVETLQKLLQE  107 (307)
Q Consensus        88 ~~Knk~L~eEV~kLq~Ll~E  107 (307)
                      +.++.+|..||.||++|+-+
T Consensus        13 l~~~~~le~EV~Rl~~ll~~   32 (33)
T 2wq1_A           13 TSKIYHNTNEIARNTKLVGE   32 (33)
T ss_dssp             HHHHHHHHHHHHHHHHHHCC
T ss_pred             HHhhHHHHHHHHHHHHHhcC
Confidence            35677789999999999864

>2hy6_A General control protein GCN4; protein design, parallel heptamer, protein structure, biosyn protein; 1.25A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 2nrn_A 3crp_A 2b1f_A 3crp_B 2ipz_A 3ck4_A 3ck4_B 2b22_A 1ce9_A

Probab=82.40  E-value=1.8  Score=29.38  Aligned_cols=19  Identities=32%  Similarity=0.354  Sum_probs=15.4

Q ss_pred             hhhhhhHHHHHHHHHHHHh
Q 021778           89 QKNKALSEEVETLQKLLQE  107 (307)
Q Consensus        89 ~Knk~L~eEV~kLq~Ll~E  107 (307)
                      .+|.+|..||.||++|+-+
T Consensus        15 ~~~~~Le~eV~RL~~ll~~   33 (34)
T 2hy6_A           15 SANYHLANAVARLAKAVGE   33 (34)
T ss_dssp             HHHHHHHHHHHHHHHHHHC
T ss_pred             HhhHHHHHHHHHHHHHhcc
Confidence            4577889999999999864

>1go4_E MAD1 (mitotic arrest deficient)-like 1; mitotic spindle checkpoint, cell cycle, mitosis, nuclear Pro; 2.05A {Homo sapiens} SCOP: h.1.22.1

Probab=82.08  E-value=6.3  Score=31.94  Aligned_cols=67  Identities=22%  Similarity=0.328  Sum_probs=44.7

Q ss_pred             HHHHHHHHHHHHHHhhhHHHHHHHHhhhhhhhh--hccc------------chHHHHHHHHHHHHHHhhhhhhHHHHHHH
Q 021778           36 TYVNAADKYIEFLRSENEKLCAQVNNLKSEVDS--IRST------------SNEQCLHYQKLLMEENQKNKALSEEVETL  101 (307)
Q Consensus        36 ~~~sAaeelie~Lr~EN~~L~~qv~~Lr~Elas--iRs~------------kd~q~~~~QkLLmEE~~Knk~L~eEV~kL  101 (307)
                      +=+.+...-|+.|+.||++|++.+..|..+|..  +|-+            +.=--..+|.. -++   -..|..||++|
T Consensus        12 e~~~~lr~ei~~Le~E~~rLr~~~~~LE~~Le~~~l~Gd~~~~~TKVlH~~~NPa~~a~~~~-~~~---~e~Lq~E~erL   87 (100)
T 1go4_E           12 EEADTLRLKVEELEGERSRLEEEKRMLEAQLERRALQGDYDQSRTKVLHMSLNPTSVARQRL-RED---HSQLQAECERL   87 (100)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCCSCCCTTTEEEEEESSCHHHHHHHHH-HHH---HHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCCccCeeeeecCChHHHHHHHH-HHH---HHHHHHHHHHH
Confidence            456778888999999999999999999888855  2211            11111222221 122   23568899999


Q ss_pred             HHHHH
Q 021778          102 QKLLQ  106 (307)
Q Consensus       102 q~Ll~  106 (307)
                      +..++
T Consensus        88 r~~v~   92 (100)
T 1go4_E           88 RGLLR   92 (100)
T ss_dssp             HHHHT
T ss_pred             HHHHH
Confidence            98876

>3qh9_A Liprin-beta-2; coiled-coil, dimerization, structural protein; 2.01A {Homo sapiens}

Probab=81.87  E-value=5.4  Score=31.48  Aligned_cols=56  Identities=23%  Similarity=0.331  Sum_probs=34.9

Q ss_pred             HHHHHHHHHHHHhhhHHHHHHHHhhhhhh----hhhcccchHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHH
Q 021778           38 VNAADKYIEFLRSENEKLCAQVNNLKSEV----DSIRSTSNEQCLHYQKLLMEENQKNKALSEEVETLQKLL  105 (307)
Q Consensus        38 ~sAaeelie~Lr~EN~~L~~qv~~Lr~El----asiRs~kd~q~~~~QkLLmEE~~Knk~L~eEV~kLq~Ll  105 (307)
                      ...+++||++++    .|+-.|.++.+|=    -.++++| ++++-.|++|-.-       +.||.+|+.-+
T Consensus        18 ~~~~E~L~qEi~----~Lr~kv~elEnErlQyEkKLKsTK-~El~~Lq~qLe~k-------d~ei~rL~~~l   77 (81)
T 3qh9_A           18 QRKAEELLQELR----HLKIKVEELENERNQYEWKLKATK-AEVAQLQEQVALK-------DAEIERLHSQL   77 (81)
T ss_dssp             HHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHH-------HHHHHHHHHHH
T ss_pred             HhhHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHhhhH-HHHHHHHHHHHhh-------HHHHHHHHHHH
Confidence            367788888765    4667776665553    2345666 5677777766432       44777776543

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=81.75  E-value=10  Score=35.99  Aligned_cols=70  Identities=10%  Similarity=0.083  Sum_probs=30.3

Q ss_pred             HHHHHHHHHHHHHHHHhhhHHHHHHHHhhhhhhhhhc---ccchHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHH
Q 021778           34 FTTYVNAADKYIEFLRSENEKLCAQVNNLKSEVDSIR---STSNEQCLHYQKLLMEENQKNKALSEEVETLQKLLQ  106 (307)
Q Consensus        34 f~~~~sAaeelie~Lr~EN~~L~~qv~~Lr~ElasiR---s~kd~q~~~~QkLLmEE~~Knk~L~eEV~kLq~Ll~  106 (307)
                      +.......++..+.+..+++++..+++++..++..++   -..+.++.+.++.+-+-.+.+..+.   .+|++|++
T Consensus       507 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~~~~~~~~~~~l~~e~~~~~---~~~~~l~~  579 (597)
T 3oja_B          507 LNKVFTHLKERQAFKLRETQARRTEADAKQKETEDLEQENIALEKQLDNKRAKQAELRQETSLKR---QKVKQLEA  579 (597)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHH
T ss_pred             HHHHHHHHHhhhhhhHHHHHHHHHhhhhhhcchhhHHhhhHHHHHHHhhhhhHHHHHHHHHHHHH---HHHHHHHH
Confidence            3334444444555555555555555544444444321   2233344444444444444443333   33444544

>3vmx_A Voltage-gated hydrogen channel 1; coiled-coil, ION channel, ION transport, membrane protein; 1.45A {Mus musculus}

Probab=81.74  E-value=5.1  Score=28.92  Aligned_cols=42  Identities=29%  Similarity=0.483  Sum_probs=32.2

Q ss_pred             HHHHHHHHHhhhHHHHHHHHhhhhhhhhhcccchHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHh
Q 021778           41 ADKYIEFLRSENEKLCAQVNNLKSEVDSIRSTSNEQCLHYQKLLMEENQKNKALSEEVETLQKLLQE  107 (307)
Q Consensus        41 aeelie~Lr~EN~~L~~qv~~Lr~ElasiRs~kd~q~~~~QkLLmEE~~Knk~L~eEV~kLq~Ll~E  107 (307)
                      |+.-|.-|+.=|+.|..+|.+|           +..|.              ++..||+||++||+.
T Consensus         2 aeq~l~kLKe~n~~L~~kv~~L-----------e~~c~--------------~~eQEieRL~~LLkq   43 (48)
T 3vmx_A            2 SERQILRLKQINIQLATKIQHL-----------EFSCS--------------EKEQEIERLNKLLKQ   43 (48)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHH-----------HHHHH--------------HHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHHHHHHHH-----------HHHcc--------------HHHHHHHHHHHHHHH
Confidence            5566888999999999998877           34442              236899999999983

>3tnu_A Keratin, type I cytoskeletal 14; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}

Probab=81.52  E-value=6.6  Score=31.88  Aligned_cols=52  Identities=19%  Similarity=0.413  Sum_probs=39.8

Q ss_pred             hhHHHHHHHHhhhhhhhhhcccchHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHH
Q 021778           51 ENEKLCAQVNNLKSEVDSIRSTSNEQCLHYQKLLMEENQKNKALSEEVETLQKLLQ  106 (307)
Q Consensus        51 EN~~L~~qv~~Lr~ElasiRs~kd~q~~~~QkLLmEE~~Knk~L~eEV~kLq~Ll~  106 (307)
                      +-..+...|.+|..+|+.+|.++..++.+||.|| +=.   =.|+-||-.-.+||.
T Consensus        78 ~l~~~q~~i~~lE~eL~~~r~em~~ql~EYq~Ll-~vK---l~Ld~EIatYRkLLE  129 (131)
T 3tnu_A           78 QLAQIQEMIGSVEEQLAQLRCEMEQQNQEYKILL-DVK---TRLEQEIATYRRLLE  129 (131)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHH---HHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHH---HHHHHHHHHHHHhHC
Confidence            4445556677888999999999999999999655 211   157889999998884

>1gk6_A Vimentin; intermediate filament, dimer, parallel coiled coil, heptad repeat, leucine zipper, fusion protein; 1.9A {Saccharomyces cerevisiae} SCOP: h.1.20.1

Probab=81.06  E-value=1.1  Score=32.50  Aligned_cols=49  Identities=29%  Similarity=0.247  Sum_probs=39.6

Q ss_pred             HHHHHHHhhhhhhhhhcccchHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHH
Q 021778           54 KLCAQVNNLKSEVDSIRSTSNEQCLHYQKLLMEENQKNKALSEEVETLQKLLQ  106 (307)
Q Consensus        54 ~L~~qv~~Lr~ElasiRs~kd~q~~~~QkLLmEE~~Knk~L~eEV~kLq~Ll~  106 (307)
                      .+...+.+|..+++.+|.++..|+.+||.||=   -| -.|+-||..-.+||.
T Consensus         4 ~~q~~i~~le~el~~~r~e~~~q~~eYq~Lln---iK-~~Le~EIatYRkLLE   52 (59)
T 1gk6_A            4 QLEDKVEELLSKNYHLENEVARLKKLVGDLLN---VK-MALDIEIATYRKLLE   52 (59)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HH-HHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HH-HHhHHHHHHHHHHHc
Confidence            45667778889999999999999999998771   11 257899999999997

>1hjb_A Ccaat/enhancer binding protein beta; transcription/DNA, protein-DNA complex; HET: DNA; 3.0A {Homo sapiens} SCOP: h.1.3.1

Probab=80.34  E-value=1.7  Score=34.22  Aligned_cols=23  Identities=30%  Similarity=0.388  Sum_probs=18.5

Q ss_pred             HHHHHHHHHHhhhHHHHHHHHhh
Q 021778           40 AADKYIEFLRSENEKLCAQVNNL   62 (307)
Q Consensus        40 Aaeelie~Lr~EN~~L~~qv~~L   62 (307)
                      .++.-++.|..||..|..+|..|
T Consensus        40 e~~~r~~~Le~EN~~Lr~~v~~L   62 (87)
T 1hjb_A           40 ETQHKVLELTAENERLQKKVEQL   62 (87)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHH
Confidence            34556778999999999998776

>1dh3_A Transcription factor CREB; protein-DNA complex, transcription/DNA complex; HET: DNA; 3.00A {Mus musculus} SCOP: h.1.3.1

Probab=80.30  E-value=2.5  Score=30.34  Aligned_cols=32  Identities=22%  Similarity=0.418  Sum_probs=27.4

Q ss_pred             HHHHHHHHHHHHHHhhhHHHHHHHHhhhhhhh
Q 021778           36 TYVNAADKYIEFLRSENEKLCAQVNNLKSEVD   67 (307)
Q Consensus        36 ~~~sAaeelie~Lr~EN~~L~~qv~~Lr~Ela   67 (307)
                      .|++-.+.-+..|..||..|..++..|..+++
T Consensus        22 ~~~~~LE~~v~~L~~eN~~L~~~~~~L~~~~~   53 (55)
T 1dh3_A           22 EYVKSLENRVAVLENQNKTLIEELKALKDLYS   53 (55)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHTTST
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            67888888899999999999999988876653

>3tnu_B Keratin, type II cytoskeletal 5; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}

Probab=80.24  E-value=6.5  Score=31.80  Aligned_cols=49  Identities=22%  Similarity=0.351  Sum_probs=37.0

Q ss_pred             HHHHHHHhhhhhhhhhcccchHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHH
Q 021778           54 KLCAQVNNLKSEVDSIRSTSNEQCLHYQKLLMEENQKNKALSEEVETLQKLLQ  106 (307)
Q Consensus        54 ~L~~qv~~Lr~ElasiRs~kd~q~~~~QkLLmEE~~Knk~L~eEV~kLq~Ll~  106 (307)
                      .+...|.+|..+|+.+|.++..++.+||.|| +=.   =.|+-||-.-.+||.
T Consensus        79 ~~q~~i~~lE~eL~~~r~e~~~ql~EYq~Ll-nvK---l~Ld~EIatYRkLLE  127 (129)
T 3tnu_B           79 DARNKLAELEEALQKAKQDMARLLREYQELM-NTK---LALDVEIATYRKLLE  127 (129)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHH---HHHHHHHHHHHHTTC
T ss_pred             HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH-HHH---HHHHHHHHHHHHhHC
Confidence            3445577788888999999999999999655 221   157888988888874

>1kd8_A GABH AIV, GCN4 acid base heterodimer acid-D12IA16V; coiled coil heterodimer, de novo protein; 1.90A {Synthetic} SCOP: h.1.3.1 PDB: 1kdd_A 1kd9_A

Probab=80.22  E-value=2.4  Score=29.09  Aligned_cols=19  Identities=32%  Similarity=0.235  Sum_probs=13.7

Q ss_pred             hhhhhhHHHHHHHHHHHHh
Q 021778           89 QKNKALSEEVETLQKLLQE  107 (307)
Q Consensus        89 ~Knk~L~eEV~kLq~Ll~E  107 (307)
                      .++.+|..||.||++|+.+
T Consensus        15 ~~~~~Le~EV~RL~~ll~~   33 (36)
T 1kd8_A           15 SEVWHLENEVARLEKENAE   33 (36)
T ss_dssp             HHHHHHHHHHHHHHHHHHH
T ss_pred             HhhHHHHHHHHHHHHHhcc
Confidence            3556678888888888764

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=80.05  E-value=6.5  Score=36.73  Aligned_cols=57  Identities=12%  Similarity=0.085  Sum_probs=39.7

Q ss_pred             HHHHHHHHHhhhhhcCcchhhhHHHHhhHHHHHHHHHHHHHHHHhhhHHHHHHHHhhhhhhhhhc
Q 021778            6 KKLYDKYDKLKKKKFSELDNLNKEQELKFTTYVNAADKYIEFLRSENEKLCAQVNNLKSEVDSIR   70 (307)
Q Consensus         6 ~KLydKYt~LKkrKlsd~d~lnkeQE~kf~~~~sAaeelie~Lr~EN~~L~~qv~~Lr~ElasiR   70 (307)
                      .++-++|..+.++       +.++++. +..+.+++.+.|++|+.||++|...+.++..+++..+
T Consensus       413 ~~~~~~~~~~~~~-------~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  469 (487)
T 3oja_A          413 RAIVKRYEEMYVE-------QQSVQNN-AIRDWDMYQHKETQLAEENARLKKLNGEADLALASAN  469 (487)
T ss_dssp             HHHHHHHHHHHHH-------HHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHH-------HHHHhhc-chhhhhhhhhHHHHHHHHhhhhhhhhhhhhhhhHhcc
Confidence            3555566666544       3333333 7778888899999999999999998888766555544

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00