Citrus Sinensis ID: 021780

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------
Protein Sequence
MLTGKNYISKEILCKTQFTMQAQRVAPPDLQCKDKFLIQGIVVPFGTSDEDITSDMFAKDSGKYVEEKKLRVILMSPPQSPVLLPRNGELKQDSSPETSLQKDRALSGVENIPPGDGVAANAEVFETAKFADELTETKDLQWLENAKERDESRAAKDVQMFGTTNVTNKLREAKDVQTFESSKDIDELISAAEDEQSRPAEDASELKPAKDILELKLAKDFEELKLKLNVMDSQLREAEHTIRKLMEARKLATREKDMLKHELEVLRRKSNLRRVQVGFPLLFVCMVALIGLVVGYLSHPQNRLSLL
Secondary Structure (PSIPRED)
ccccccEEcccccEEEEEEEccccccccccccccEEEEEEEEEccccccccccccHHcccccccEEEEEEEEEEEcccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHccccccccccHHHHHccccccccccccHHHHHHHHcccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHHccccccccc
Secondary Structure Prediction (SSPRO)
cccccccEcccccEEEEEEEccccccccccccccEEEEEEEEEcccccHHcccHHHHccccccEEEEEEEEEEEEcccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHccccHHcHHHHHcHHHccccHHHHHHccccHHHHHHHHHHHcccccHcccccccccccccccccccccHcccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHccccccccccHHHHHHHHHHHHHHHHHHHHccccccccc
Coil and Loop (DISEMBL)
mltgknyiskeilcKTQFtmqaqrvappdlqckdkfliqgivvpfgtsdeditsdmfakdsgkyveEKKLRVIlmsppqspvllprngelkqdsspetslqkdralsgvenippgdgvaanaEVFETAKFADELTETKDLQWLENAKERDESRAAKDVQMFGTTNVTNKLreakdvqtfessKDIDELISAaedeqsrpaedaselkpaKDILELKLAKDFEELKLKLNVMDSQLREAEHTIRKLMEARKLATREKDMLKHELEVLRRKSNLRRVQVGFPLLFVCMVALIGLVVGYlshpqnrlsll
Flexible Loop (DISEMBL)
mltgknyiskeilCKTQFTMQAQRVAPPDLQCKDKFLIQGIVVPfgtsdeditsdMFAKDSGKYVEEKKLRVILMsppqspvllprngelkqdsspetslqkdralSGVENIPPGDGVAANAEVFETAKFADELTETKDLQWLENAKerdesraakdvqmfgttnvtnklreakdvqtfesskDIDELISAaedeqsrpaedaselkpakDILELKLAKDFEELKLKLNVMDSQLREAEHTIRKLMEARKLATREKDMLKHElevlrrksnlrrvQVGFPLLFVCMVALIGLVVGYLSHPQNRLSLL
Low Complexity Region (SEG)
MLTGKNYISKEILCKTQFTMQAQRVAPPDLQCKDKFLIQGIVVPFGTSDEDITSDMFAKDSGKYVEEKKLRVILMSPPQSPVLLPRNGELKQDSSPETSLQKDRALSGVENIPPGDGVAANAEVFETAKFADELTETKDLQWLENAKERDESRAAKDVQMFGTTNVTNKLREAKDVQTFESSKDIDELISAAEDEQSRPAEDASELKPAKDILELKLAKDFEELKLKLNVMDSQLREAEHTIRKLMEARKLATREKDMLKHELEVLRRKSNLRRVQVGFPLLFVCMVALIGLVVGYLSHPQNRLSLL
Disordered region (IsUnstruct)
******YISKEILCKTQFTMQAQRVAPPDLQCKDKFLIQGIVVPFGTSDEDITSDMFA*****YV***KLRVI*************************************************EVFETAKFAD********************************************************************************LELKLAKDFEELKLKLNVM*****************************HELEVLRRKSNLRRVQVGFPLLFVCMVALIGLVVGYLS*********
Disordered Region (DISOPRED)
***GKNYISKEILCKTQFTMQAQRVAPPDLQCKDKFLIQGIVVPFGTSDEDITSDMFAKDSGKYVEEKKLRVI****************************************************************************************************************************************************************************************************************LFVCMVALIGLVVGYLSHPQNRL***
Disordered Region (DISEMBL)
MLTGKNYISKEILCKTQFTMQAQRVAPPDLQCKDKFLIQGIVVPFGTSDEDITSDMFAKDSGKYVEEKKLRVILMSPPQSPVLLPRNG***************RALSGVENIPPGDGVAANAEVFETAKFADELTETKDLQWLEN**********KDVQMFGTTNVTNKLREAKDVQTFESSKDIDELISA**************LKPAKDILELKLAKDFEELKLKLNVMDSQLREAEHTIRKLMEARKLATREKDMLKHELEVLRRKSNLRRVQVGFPLLFVCMVALIGLVVGYLSHPQNRLSLL
Disordered Region (DISPRO)
****KNYISKEILCKTQFTMQAQRVAPPDLQCKDKFLIQGIVVPFGTSDEDITSDMFAKDSGKYVEEKKLRVILMSPP****************************************************************************************************************************************LKLAKDFEELKLKLNVMDSQLREAEHTIRKLMEARKLATREKDMLKHELEVLRRKSNLRRVQVGFPLLFVCMVALIGLVVGYLSHPQN*****
Transmembrane Helix (TMHMM)
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Transmembrane Helix (HMMTOP)
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Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
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TM Helix, Signal Peptide (Phobius)
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Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MLTGKNYISKEILCKTQFTMQAQRVAPPDLQCKDKFLIQGIVVPFGTSDEDITSDMFAKDSGKYVEEKKLRVILMSPPQSPVLLPRNGELKQDSSPETSLQKDRALSGVENIPPGDGVAANAEVFETAKFADELTETKDLQWLENAKERDESRAAKDVQMFGTTNVTNKLREAKDVQTFESSKDIDELISAAEDEQSRPAEDASELKPAKDILELKLAKDxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxSNLRRVQVGFPLLFVCMVALIGLVVGYLSHPQNRLSLL
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	307	2.2.26 [Sep-21-2011]
B9DHD7	386	Vesicle-associated protei	yes	no	0.895	0.712	0.364	7e-41
Q9SHC8	239	Vesicle-associated protei	no	no	0.407	0.523	0.406	4e-16
Q8VZ95	256	Vesicle-associated protei	no	no	0.276	0.332	0.448	1e-15
Q84WW5	239	Vesicle-associated protei	no	no	0.273	0.351	0.436	2e-13
Q9SYC9	571	Vesicle-associated protei	no	no	0.328	0.176	0.407	6e-12
Q9LVU1	220	Vesicle-associated protei	no	no	0.149	0.209	0.5	9e-12
O82213	149	Vesicle-associated protei	no	no	0.192	0.395	0.474	6e-09
Q7V9F9	210	30S ribosomal protein S6	yes	no	0.254	0.371	0.344	3e-05

>sp|B9DHD7|VAP22_ARATH Vesicle-associated protein 2-2 OS=Arabidopsis thaliana GN=PVA22 PE=1 SV=1

 Score =  167 bits (424), Expect = 7e-41,   Method: Compositional matrix adjust.
 Identities = 120/329 (36%), Positives = 172/329 (52%), Gaps = 54/329 (16%)

Query: 14  CKTQFTMQAQRVAPPDLQCKDKFLIQGIVVPFGTSDEDITSDMFAKDSGKYVEEKKLRVI 73
           C+    MQA +  PPD+ CKDKFLIQ   V   T+DEDIT+ MF+K  GK++EE KLRV 
Sbjct: 64  CEFTVIMQAFKEPPPDMVCKDKFLIQSTAVSAETTDEDITASMFSKAEGKHIEENKLRVT 123

Query: 74  LMSPPQSPVLLPRNGELKQDSSPETSLQKDRALSGVENIPP----GDGV----------- 118
           L+ P  SP L P N   KQ +  E S+ KDR  S  E + P    G+ V           
Sbjct: 124 LVPPSDSPELSPINTP-KQGAVFEDSILKDRLYSQSETLAPPQYEGEIVKEPRMVGHDEL 182

Query: 119 --AANAEVFETAKFA-----------DELTETKD------------LQWLENAKERDESR 153
             A NA+  +T K A           ++L  TKD               + + K+ D+ R
Sbjct: 183 KAADNAKELKTPKMATVDFVEDRYTANDLKATKDSYDSSRMAKETGFDPIRSHKDADDGR 242

Query: 154 AAKDVQMFGTTNVTNKLREAKDV---QTFESSKDIDE--LISAAEDEQSRPAEDASELKP 208
           A K      TTN+   +++A D+   Q F +   +D    IS   D       D   ++ 
Sbjct: 243 AIK-----ATTNLDAPMKKAMDLPRDQGFTNGIAVDSEPKISKERDVVQLQKTDGQNVR- 296

Query: 209 AKDILELKLAKDFEELKLKLNVMDSQLREAEHTIRKLMEARKLATREKDMLKHELEVLRR 268
              + ELKL KD EE+KLK++ ++S+L++A+ TI KLME R ++++ +  L+HEL  LR 
Sbjct: 297 --GLDELKLVKDIEEMKLKVDALESKLKQADSTISKLMEERSISSQHRQSLQHELAELRT 354

Query: 269 KSNLRRVQVGFPLLFVCMVALIGLVVGYL 297
           K  ++ V  GFPLL+VC+VA I  V+G+ 
Sbjct: 355 KKIVKEVHNGFPLLYVCVVAFIAYVIGHF 383

May play a role in vesicle trafficking.
Arabidopsis thaliana (taxid: 3702)

>sp|Q9SHC8|VAP12_ARATH Vesicle-associated protein 1-2 OS=Arabidopsis thaliana GN=PVA12 PE=1 SV=1

 Score = 85.5 bits (210), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 54/133 (40%), Positives = 76/133 (57%), Gaps = 8/133 (6%)

Query: 9   SKEILCKTQFTMQAQRVAPPDLQCKDKFLIQGIVVPFGTSDEDITSDMFAKDSGKYVEEK 68
           S E+L     TMQAQ+ AP DLQCKDKFL+Q +V   G + +D+T +MF+K++G  VEE 
Sbjct: 63  SSEVL----VTMQAQKEAPADLQCKDKFLLQCVVASPGATPKDVTHEMFSKEAGHRVEET 118

Query: 69  KLRVILMSPPQSPVLLPRNGELKQDSSPETSLQKDRALSGVENIP--PGDGVAANAEVFE 126
           KLRV+ ++PP+ P  + R G  ++ SSP  S+  +   S     P    D V A     E
Sbjct: 119 KLRVVYVAPPRPPSPV-REGS-EEGSSPRASVSDNGNASDFTAAPRFSADRVDAQDNSSE 176

Query: 127 TAKFADELTETKD 139
                 +LTE K+
Sbjct: 177 ARALVTKLTEEKN 189

Vesicle-associated protein that binds the oxysterol-binding protein ORP3A and allows its targeting to the ER.

Arabidopsis thaliana (taxid: 3702)

>sp|Q8VZ95|VAP11_ARATH Vesicle-associated protein 1-1 OS=Arabidopsis thaliana GN=PVA11 PE=1 SV=1

 Score = 84.3 bits (207), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 39/87 (44%), Positives = 59/87 (67%), Gaps = 2/87 (2%)

Query: 14  CKTQFTMQAQRVAPPDLQCKDKFLIQGIVVPFGTSDEDITSDMFAKDSGKYVEEKKLRVI 73
           C+   TMQAQ+ AP D+QCKDKFL+QG++   G + +++T +MF+K++G  VEE KLRV 
Sbjct: 81  CEVLVTMQAQKEAPSDMQCKDKFLLQGVIASPGVTAKEVTPEMFSKEAGHRVEETKLRVT 140

Query: 74  LMSPPQSPVLLPRNGELKQDSSPETSL 100
            ++PP+ P  +    E  + SSP  S+
Sbjct: 141 YVAPPRPPSPVHEGSE--EGSSPRASV 165

May play a role in vesicle trafficking.

Arabidopsis thaliana (taxid: 3702)

>sp|Q84WW5|VAP13_ARATH Vesicle-associated protein 1-3 OS=Arabidopsis thaliana GN=PVA13 PE=2 SV=1

 Score = 77.0 bits (188), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 38/87 (43%), Positives = 58/87 (66%), Gaps = 3/87 (3%)

Query: 14  CKTQFTMQAQRVAPPDLQCKDKFLIQGIVVPFGTSDEDITSDMFAKDSGKYVEEKKLRVI 73
           C    TMQAQ+ AP D+QCKDKFL+Q +VV  GT+ +++ ++MF K++G+ +E+ KLRV+
Sbjct: 66  CNVTVTMQAQKEAPLDMQCKDKFLVQTVVVSDGTTSKEVLAEMFNKEAGRVIEDFKLRVV 125

Query: 74  LMSPPQSPVLLPRNGELKQDSSPETSL 100
            + P   P  +P   E  + +SP  SL
Sbjct: 126 YI-PANPPSPVPEGSE--EGNSPMASL 149

May play a role in vesicle trafficking.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9SYC9|VAP14_ARATH Vesicle-associated protein 1-4 OS=Arabidopsis thaliana GN=PVA14 PE=2 SV=1

 Score = 71.6 bits (174), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 44/108 (40%), Positives = 64/108 (59%), Gaps = 7/108 (6%)

Query: 14  CKTQFTMQAQRVAPPDLQCKDKFLIQGIVVPFGTSDEDITSDMFAKDSGKYVEEKKLRVI 73
           C+    MQA + AP D QCKDK L Q  VV  GT D+++TS+MF+K++G  VEE   ++I
Sbjct: 65  CEVLVVMQALKEAPADRQCKDKLLFQCKVVEPGTMDKEVTSEMFSKEAGHRVEETIFKII 124

Query: 74  LMSP--PQSPVLLPRNGELKQDSSPETSLQKDRALSGVENIPPGDGVA 119
            ++P  PQSPV   + G L+  SSP  S+  D+  +    + P  G+ 
Sbjct: 125 YVAPPQPQSPV---QEG-LEDGSSPSASVS-DKGNASEVFVGPSVGIV 167

May play a role in vesicle trafficking.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9LVU1|VAP21_ARATH Vesicle-associated protein 2-1 OS=Arabidopsis thaliana GN=PVA21 PE=2 SV=1

 Score = 71.2 bits (173), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 32/64 (50%), Positives = 44/64 (68%)

Query: 14  CKTQFTMQAQRVAPPDLQCKDKFLIQGIVVPFGTSDEDITSDMFAKDSGKYVEEKKLRVI 73
           C  + T+QAQR  PPD+QCKDKFL+Q  +VP  T  +++  D F KDSGK + E KL+V 
Sbjct: 68  CIIRVTLQAQREYPPDMQCKDKFLLQSTIVPPHTDVDELPQDTFTKDSGKTLTECKLKVS 127

Query: 74  LMSP 77
            ++P
Sbjct: 128 YITP 131

May play a role in vesicle trafficking.

Arabidopsis thaliana (taxid: 3702)

>sp|O82213|VAP31_ARATH Vesicle-associated protein 3-1 OS=Arabidopsis thaliana GN=PVA31 PE=3 SV=1

 Score = 62.0 bits (149), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 28/59 (47%), Positives = 41/59 (69%)

Query: 14  CKTQFTMQAQRVAPPDLQCKDKFLIQGIVVPFGTSDEDITSDMFAKDSGKYVEEKKLRV 72
           CK   TMQAQ+  P D+Q  +KF+IQ ++   G + +++T +MF+K+SG  VEE KLRV
Sbjct: 65  CKVLVTMQAQKEVPSDMQSFEKFMIQSVLASPGVTAKEVTREMFSKESGHVVEETKLRV 123

May play a role in vesicle trafficking.

Arabidopsis thaliana (taxid: 3702)

>sp|Q7V9F9|RS6_PROMA 30S ribosomal protein S6 OS=Prochlorococcus marinus (strain SARG / CCMP1375 / SS120) GN=rpsF PE=3 SV=1

 Score = 49.3 bits (116), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 30/87 (34%), Positives = 52/87 (59%)

Query: 139 DLQWLENAKERDESRAAKDVQMFGTTNVTNKLREAKDVQTFESSKDIDELISAAEDEQSR 198
           D + ++ AK+  E + AKD +       T +++EAKD +  + +KD  E+  A + ++ +
Sbjct: 121 DTKEVKEAKDTKEVKEAKDTKEVKEAKDTKEVKEAKDTKEVKEAKDTKEVKEAKDTKEVK 180

Query: 199 PAEDASELKPAKDILELKLAKDFEELK 225
            A+D  E+K AKD  E+K AKD +E+K
Sbjct: 181 EAKDTKEVKEAKDTKEVKEAKDTKEVK 207

Binds together with S18 to 16S ribosomal RNA.

Prochlorococcus marinus (strain SARG / CCMP1375 / SS120) (taxid: 167539)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	307
359806816	295	uncharacterized protein LOC100801987 [Gl	0.755	0.786	0.494	8e-66
358248386	295	uncharacterized protein LOC100794670 [Gl	0.755	0.786	0.498	6e-65
225432396	293	PREDICTED: vesicle-associated protein 2-	0.752	0.788	0.513	8e-65
449432791	340	PREDICTED: vesicle-associated protein 2-	0.899	0.811	0.494	9e-64
357478585	306	Vesicle-associated membrane protein-asso	0.752	0.754	0.458	1e-60
217072786	306	unknown [Medicago truncatula]	0.752	0.754	0.458	2e-60
255551631	304	vesicle-associated membrane protein, put	0.726	0.733	0.473	2e-60
225451130	336	PREDICTED: vesicle-associated protein 2-	0.859	0.785	0.462	2e-56
359806487	278	uncharacterized protein LOC100816526 [Gl	0.693	0.766	0.395	8e-45
449517920	394	PREDICTED: vesicle-associated protein 2-	0.921	0.718	0.354	2e-39

>gi|359806816|ref|NP_001241309.1| uncharacterized protein LOC100801987 [Glycine max] gi|255641982|gb|ACU21258.1| unknown [Glycine max]

 Score =  256 bits (655), Expect = 8e-66,   Method: Compositional matrix adjust.
 Identities = 142/287 (49%), Positives = 179/287 (62%), Gaps = 55/287 (19%)

Query: 14  CKTQFTMQAQRVAPPDLQCKDKFLIQGIVVPFGTSDEDITSDMFAKDSGKYVEEKKLRVI 73
           C    TMQAQR+APPD+ CKDKFLIQ  VVP GT+++DITSDMFAKDSGK++EEKKLRV+
Sbjct: 64  CDFTVTMQAQRMAPPDMLCKDKFLIQSTVVPVGTTEDDITSDMFAKDSGKFIEEKKLRVV 123

Query: 74  LMSPPQSPVLLPRNGELKQDSSPETSLQKDRALSGVENIPPGDGVAANAEVFETAKFADE 133
           L+SPP SPVLLP NG++K D S E ++QKDR  SGVENIPP   V               
Sbjct: 124 LISPPSSPVLLPVNGDMKHDPSNEINVQKDRLPSGVENIPPPRKV--------------- 168

Query: 134 LTETKDLQWLENAKERDESRAAKDVQMFGTTNVTNKLREAKDVQTFESSKDIDELISAAE 193
              +++++ LE A++  E RA +D+                                   
Sbjct: 169 ---SEEVKGLEPAQDMKEDRADEDI----------------------------------- 190

Query: 194 DEQSRPAEDASELKPAKDILELKLAKDFEELKLKLNVMDSQLREAEHTIRKLMEARKLAT 253
               R AE+  ++KPAKD ++  LA + EELK KL+VMDS+LREAE TI KL E R+  T
Sbjct: 191 --VPRQAENVGDMKPAKDDVQSNLANESEELKSKLSVMDSKLREAEVTITKLNEERRRNT 248

Query: 254 REKDMLKHELEVLRRKSNLRRVQVGFPLLFVCMVALIGLVVGYLSHP 300
           +EKD+LK ELEVL+R+ N +  Q GFP LFVCMVALI + VGY  HP
Sbjct: 249 QEKDLLKKELEVLKRQINTKGNQAGFPFLFVCMVALISVAVGYYIHP 295

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|358248386|ref|NP_001239873.1| uncharacterized protein LOC100794670 [Glycine max] gi|255634614|gb|ACU17669.1| unknown [Glycine max]

 Score =  253 bits (647), Expect = 6e-65,   Method: Compositional matrix adjust.
 Identities = 143/287 (49%), Positives = 178/287 (62%), Gaps = 55/287 (19%)

Query: 14  CKTQFTMQAQRVAPPDLQCKDKFLIQGIVVPFGTSDEDITSDMFAKDSGKYVEEKKLRVI 73
           C    TMQAQR+APPD+ CKDKFLIQ  VVPFGT+++DITSDMF+KDSGKY+EEKKLRV+
Sbjct: 64  CDFTVTMQAQRMAPPDMLCKDKFLIQSTVVPFGTTEDDITSDMFSKDSGKYIEEKKLRVV 123

Query: 74  LMSPPQSPVLLPRNGELKQDSSPETSLQKDRALSGVENIPPGDGVAANAEVFETAKFADE 133
           L+SPP SPVLLP NG++K D S E  +QKDR  SGVENIPP              K +DE
Sbjct: 124 LISPPSSPVLLPVNGDMKHDPSNEIYVQKDRVPSGVENIPP------------PCKVSDE 171

Query: 134 LTETKDLQWLENAKERDESRAAKDVQMFGTTNVTNKLREAKDVQTFESSKDIDELISAAE 193
                 ++ LE A++  E R  +D+            R+A++V                 
Sbjct: 172 ------VKGLEPAQDMKEDREDEDIVP----------RQAENV----------------- 198

Query: 194 DEQSRPAEDASELKPAKDILELKLAKDFEELKLKLNVMDSQLREAEHTIRKLMEARKLAT 253
                      ++KPAKD ++L L  + EELK KL+VMDS+LR AE TI KL E R   T
Sbjct: 199 ----------GDMKPAKDDMQLNLTNESEELKSKLSVMDSKLRVAEVTITKLNEERHRNT 248

Query: 254 REKDMLKHELEVLRRKSNLRRVQVGFPLLFVCMVALIGLVVGYLSHP 300
           +EKD+LK ELEVL+R+ N +  Q GFP LFVCMVALI + VGY  HP
Sbjct: 249 QEKDLLKKELEVLKRQINTKGSQAGFPFLFVCMVALISVAVGYYIHP 295

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225432396|ref|XP_002277190.1| PREDICTED: vesicle-associated protein 2-2 [Vitis vinifera] gi|297736920|emb|CBI26121.3| unnamed protein product [Vitis vinifera]

 Score =  253 bits (646), Expect = 8e-65,   Method: Compositional matrix adjust.
 Identities = 147/286 (51%), Positives = 175/286 (61%), Gaps = 55/286 (19%)

Query: 14  CKTQFTMQAQRVAPPDLQCKDKFLIQGIVVPFGTSDEDITSDMFAKDSGKYVEEKKLRVI 73
           C    TMQAQRVAPPD+QCKDKFLIQ  VVP+GT++ DI SDMFAKDSGKY+EEKKLRV+
Sbjct: 62  CDVMVTMQAQRVAPPDMQCKDKFLIQSTVVPYGTTETDIRSDMFAKDSGKYLEEKKLRVV 121

Query: 74  LMSPPQSPVLLPRNGELKQDSSPETSLQKDRALSGVENIPPGDGVAANAEVFETAKFADE 133
           L+ P  SPVLLP NG LKQD   E   QKD+ LSGVEN PP   VA + E F+TAK    
Sbjct: 122 LIGPAHSPVLLPLNGLLKQDPCHENFSQKDQLLSGVENTPPAHVVAKDVEGFKTAKVT-- 179

Query: 134 LTETKDLQWLENAKERDESRAAKDVQMFGTTNVTNKLREAKDVQTFESSKDIDELISAAE 193
                           DESRAAKDV+           R A+DV   + + DI     A E
Sbjct: 180 ----------------DESRAAKDVES----------RPAEDVDELKLTNDI-----AKE 208

Query: 194 DEQSRPAEDASELKPAKDILELKLAKDFEELKLKLNVMDSQLREAEHTIRKLMEARKLAT 253
           +              AKDI         EEL  KLNV++  L EA+  I KL E R +AT
Sbjct: 209 NL-------------AKDI---------EELNSKLNVVELNLSEAKLIITKLTEERSMAT 246

Query: 254 REKDMLKHELEVLRRKSNLRRVQVGFPLLFVCMVALIGLVVGYLSH 299
           REK+ LKHEL +LR+KS++RRV+VGFP LFV ++ALIG+  GYL H
Sbjct: 247 REKETLKHELAMLRKKSDVRRVRVGFPFLFVLIIALIGIAAGYLMH 292

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449432791|ref|XP_004134182.1| PREDICTED: vesicle-associated protein 2-2-like [Cucumis sativus] gi|449495402|ref|XP_004159830.1| PREDICTED: vesicle-associated protein 2-2-like [Cucumis sativus]

 Score =  249 bits (637), Expect = 9e-64,   Method: Compositional matrix adjust.
 Identities = 142/287 (49%), Positives = 187/287 (65%), Gaps = 11/287 (3%)

Query: 14  CKTQFTMQAQRVAPPDLQCKDKFLIQGIVVPFGTSDEDITSDMFAKDSGKYVEEKKLRVI 73
           C    TM AQR APPD+QCKDKFL+QG V+  GTS+EDITSD+FAKDSGK++EEKKL+V 
Sbjct: 64  CDFTVTMLAQRTAPPDMQCKDKFLVQGTVISPGTSEEDITSDVFAKDSGKHIEEKKLKVF 123

Query: 74  LMSPPQSPVLLPRNGELKQDSSPETSLQKDRALSGVENIPPGDGVAANAEVFETAKFADE 133
           L S   +PVLLP NGELK DS+ ETS+ +DR  +GVENIPP   VA ++   +T K  DE
Sbjct: 124 LASATPTPVLLPINGELKLDSNHETSMPRDRMQTGVENIPPPSKVAEDSNGLDTRKHIDE 183

Query: 134 LTETKDLQWLENAKERDESRAAKDVQMFGTTNVTNKLREAKDVQTFESSKDIDELISAAE 193
           L        L         + A+ V+   T    ++   A++V T  S     E+  + E
Sbjct: 184 LRPVDTPVSLSPP-----YKVAEGVEKIDTCKDADENGAAENVPTRRS-----EVAESVE 233

Query: 194 DEQSRPAEDASELKPAKDILELKLAKDFEELKLKLNVMDSQLREAEHTIRKLMEARKLAT 253
           + ++ PAE   E K +KD+ EL L KDF+ELK KL +MD++L EAE TI +L + R + T
Sbjct: 234 NIETMPAEGIEESKLSKDLPELNLTKDFQELKSKLALMDAELLEAEATIMRLKKERTVTT 293

Query: 254 REKDMLKHELEVLRRKSNLRRVQVGFPLLFVCMVALIGLVVGYLSHP 300
           +E++MLK +LE L RKS  R +QVGFPL++V MVA I L+VGY  HP
Sbjct: 294 QEREMLKRDLETL-RKSGQRSIQVGFPLMYVLMVACISLLVGYFIHP 339

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357478585|ref|XP_003609578.1| Vesicle-associated membrane protein-associated protein SCS2 [Medicago truncatula] gi|355510633|gb|AES91775.1| Vesicle-associated membrane protein-associated protein SCS2 [Medicago truncatula]

 Score =  239 bits (610), Expect = 1e-60,   Method: Compositional matrix adjust.
 Identities = 137/299 (45%), Positives = 178/299 (59%), Gaps = 68/299 (22%)

Query: 14  CKTQFTMQAQRVAPPDLQCKDKFLIQGIVVPFGTSDEDITSDMFAKDSGKYVEEKKLRVI 73
           C    TMQAQR APPD+ CKDKFLI   VVPFGT+++DITSDMFAKD+GKYVEEKKL+V+
Sbjct: 64  CDFTVTMQAQRTAPPDMHCKDKFLIISTVVPFGTTEDDITSDMFAKDTGKYVEEKKLKVV 123

Query: 74  LMSPPQSPVLLPRNGELKQDSSPETSLQKDRALSGVENIPPGDGVAANAEVFETAKFADE 133
           L+SPP SPVLLP NG++KQD S + ++ KDR  SG+ENIPP                   
Sbjct: 124 LISPPSSPVLLPVNGDIKQDPSNQINVLKDRVPSGIENIPP------------------P 165

Query: 134 LTETKDLQWLENAKERDESRAAKDVQMFGTTNVTNKLREAKDVQTFESSKDIDELISAAE 193
           L ++++++ LE A +  E +                                DE+I    
Sbjct: 166 LRDSEEVKGLEPALDTREDKT-------------------------------DEVIVP-- 192

Query: 194 DEQSRPAEDASELKPAKDILELKLAKDFEELKLKLNVMDSQLREA------------EHT 241
               R AE+  ++ P KD ++L LAK  EELK +L++MDS+LRE             E  
Sbjct: 193 ----RHAENVGDMSPEKDDVQLNLAKSCEELKSRLSMMDSKLREVRDPEFRSIIMTTEAA 248

Query: 242 IRKLMEARKLATREKDMLKHELEVLRRKSNLRRVQVGFPLLFVCMVALIGLVVGYLSHP 300
           + KL E R+   +EK++LK ELEVL+RKSN  +VQ GFPLLFVCMVAL+G+ VGY  HP
Sbjct: 249 VMKLNEERRANIKEKELLKQELEVLKRKSN-AKVQAGFPLLFVCMVALVGVAVGYYIHP 306

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|217072786|gb|ACJ84753.1| unknown [Medicago truncatula]

 Score =  239 bits (609), Expect = 2e-60,   Method: Compositional matrix adjust.
 Identities = 137/299 (45%), Positives = 178/299 (59%), Gaps = 68/299 (22%)

Query: 14  CKTQFTMQAQRVAPPDLQCKDKFLIQGIVVPFGTSDEDITSDMFAKDSGKYVEEKKLRVI 73
           C    TMQAQR APPD+ CKDKFLI   VVPFGT+++DITSDMFAKD+GKYVEEKKL+V+
Sbjct: 64  CDFTVTMQAQRTAPPDMHCKDKFLIISTVVPFGTTEDDITSDMFAKDTGKYVEEKKLKVV 123

Query: 74  LMSPPQSPVLLPRNGELKQDSSPETSLQKDRALSGVENIPPGDGVAANAEVFETAKFADE 133
           L+SPP SPVLLP NG++KQD S + ++ KDR  SG+ENIPP                   
Sbjct: 124 LISPPSSPVLLPVNGDIKQDPSNQINVLKDRVPSGIENIPP------------------P 165

Query: 134 LTETKDLQWLENAKERDESRAAKDVQMFGTTNVTNKLREAKDVQTFESSKDIDELISAAE 193
           L ++++++ LE A +  E +                                DE+I    
Sbjct: 166 LRDSEEVKGLEPALDTREDKT-------------------------------DEVIVP-- 192

Query: 194 DEQSRPAEDASELKPAKDILELKLAKDFEELKLKLNVMDSQLREA------------EHT 241
               R AE+  ++ P KD ++L LAK  EELK +L++MDS+LRE             E  
Sbjct: 193 ----RHAENVGDMSPEKDDVQLNLAKSCEELKSRLSMMDSKLREVRDPEFRSIIMTTEAA 248

Query: 242 IRKLMEARKLATREKDMLKHELEVLRRKSNLRRVQVGFPLLFVCMVALIGLVVGYLSHP 300
           + KL E R+   +EK++LK ELEVL+RKSN  +VQ GFPLLFVCMVAL+G+ VGY  HP
Sbjct: 249 VMKLNEERRANIKEKELLKQELEVLKRKSN-AKVQAGFPLLFVCMVALVGVAVGYYIHP 306

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255551631|ref|XP_002516861.1| vesicle-associated membrane protein, putative [Ricinus communis] gi|223543949|gb|EEF45475.1| vesicle-associated membrane protein, putative [Ricinus communis]

 Score =  238 bits (608), Expect = 2e-60,   Method: Compositional matrix adjust.
 Identities = 132/279 (47%), Positives = 173/279 (62%), Gaps = 56/279 (20%)

Query: 14  CKTQFTMQAQRVAPPDLQCKDKFLIQGIVVPFGTSDEDITSDMFAKDSGKYVEEKKLRVI 73
           C+   TMQAQ+VAPPD  CKDKFL+Q  +VPFGT+DEDITS MF+K+SGKY+EEKKLRV+
Sbjct: 65  CEFTVTMQAQKVAPPDFLCKDKFLVQSTIVPFGTTDEDITSGMFSKESGKYIEEKKLRVV 124

Query: 74  LMSPPQSPVLLPRNGELKQDSSPETSLQKDRALSGVENIPPGDGVAANAEVFETAKFADE 133
           L + P SPVLLP NGELK+D   +TSL KD + +G+ENIPP + +  +   F++AK  +E
Sbjct: 125 LTNAPTSPVLLPNNGELKKDPFYDTSLHKDISQNGIENIPPPERLDEDISSFQSAKVIEE 184

Query: 134 LTETKDLQWLENAKERDESRAAKDVQMFGTTNVTNKLREAKDVQTFESSKDIDELISAAE 193
           L   KD          +ESR A D +         +L  AKDV                 
Sbjct: 185 LKTVKD----------EESRPADDAE---------ELESAKDV----------------- 208

Query: 194 DEQSRPAEDASELKPAKDILELKLAKDFEELKLKLNVMDSQLREAEHTIRKLMEARKLAT 253
                              +E KL KDFEELK +L++MDS+LREA+H I KL +    A 
Sbjct: 209 -------------------VEAKLVKDFEELKTRLHLMDSKLREADHKIMKLTDESSTAI 249

Query: 254 REKDMLKHELEVLRRKSNLRRVQVGFPLLFVCMVALIGL 292
           REK+MLK E+E+LRR + ++R+Q+GFPLL+VC V+LI L
Sbjct: 250 REKNMLKQEVELLRR-NKVKRIQMGFPLLYVCTVSLISL 287

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225451130|ref|XP_002266266.1| PREDICTED: vesicle-associated protein 2-2 [Vitis vinifera] gi|298204983|emb|CBI34290.3| unnamed protein product [Vitis vinifera]

 Score =  225 bits (574), Expect = 2e-56,   Method: Compositional matrix adjust.
 Identities = 136/294 (46%), Positives = 175/294 (59%), Gaps = 30/294 (10%)

Query: 14  CKTQFTMQAQRVAPPDLQCKDKFLIQGIVVPFGTSDEDITSDMFAKDSGKYVEEKKLRVI 73
           C    TMQAQR APPD+ CKDKFL+Q  +VP GTSDEDIT  MF+KDSGKY+EE KLRVI
Sbjct: 64  CDFTVTMQAQRSAPPDMICKDKFLVQSTIVPAGTSDEDITPGMFSKDSGKYIEENKLRVI 123

Query: 74  LMSPPQSPVLLPRNGELKQDSSPETSLQKDRALSGVENIPPGDGVAANAEVFETAKFADE 133
           L+SPP SPVL P NG L Q    E SL KD  LS V+ + P   VA            DE
Sbjct: 124 LISPPNSPVLSPINGALTQVPVYEASLPKDEVLSRVKIVTPHHVVA-----------KDE 172

Query: 134 LTETKDLQWLENAKERDESRAAKDVQMFGTTNVTNKLREAKDVQTFESSKDIDELISAAE 193
            +E  D +    A+  DE                 KL + K+++      D +EL   A+
Sbjct: 173 ESEMLDEELKPAAELVDEELKP-----------AAKLVDDKELKPVAQKVDTEELKPMAQ 221

Query: 194 --DEQSRPAEDASEL------KPAKDILELKLAKDFEELKLKLNVMDSQLREAEHTIRKL 245
             DE+ + A   +++      K A+D+ ELKL KD EE+K KLN ++S+L EAE TI KL
Sbjct: 222 KVDEEFKTAAQVAQMVDDMESKQARDVEELKLVKDIEEMKSKLNQLESKLSEAEVTISKL 281

Query: 246 MEARKLATREKDMLKHELEVLRRKSNLRRVQVGFPLLFVCMVALIGLVVGYLSH 299
            E R+L  +E++ L+ EL V + K + RR Q GFPLLFVCMVAL+ +++GYL H
Sbjct: 282 TEERRLTIQERENLQQELAVFQSKRSGRRAQAGFPLLFVCMVALVSIMLGYLCH 335

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359806487|ref|NP_001240997.1| uncharacterized protein LOC100816526 [Glycine max] gi|255635548|gb|ACU18124.1| unknown [Glycine max]

 Score =  186 bits (473), Expect = 8e-45,   Method: Compositional matrix adjust.
 Identities = 114/288 (39%), Positives = 158/288 (54%), Gaps = 75/288 (26%)

Query: 14  CKTQFTMQAQRVAPPDLQCKDKFLIQGIVVPFGTSDEDITSDMFAKDSGKYVEEKKLRVI 73
           C    TMQAQR APPDL CKDKFL+Q  VVP GT++++I+SD+F KDSG+ V+EKKLRV+
Sbjct: 65  CDFTVTMQAQRTAPPDLHCKDKFLVQSAVVPKGTTEDEISSDLFVKDSGRLVDEKKLRVV 124

Query: 74  LMSPPQSPVLLPRNGELKQDSSPETSLQKDRALSGVENIPPGDGVAANAEVFETAKFADE 133
           L++ P SPV    NG+LKQD                   PP             ++    
Sbjct: 125 LINSPSSPV----NGDLKQD-------------------PP-------------SQMLPS 148

Query: 134 LTETKDLQWLENAKERDESRAAKDVQMFGTTNVTNKLREAKDVQTFESSKDIDELISAAE 193
           LT  K ++            AA+D++            +  D  TF S++ +        
Sbjct: 149 LTAEKGME------------AAQDME-----------EDGADKGTFPSTRSV-------- 177

Query: 194 DEQSRPAEDASELKPAKDILELKLA-KDFEELKLKLNVMDSQLREAEHTIRKLMEARKLA 252
                  E   ++K   D + L  A KD EELK +L++MD++LREAE TI KL E R+  
Sbjct: 178 -------EKVGDMKQVNDAVNLSFATKDSEELKSRLSIMDAKLREAEGTIMKLNEERRRN 230

Query: 253 TREKDMLKHELEVLRRKSNLRRVQVGFPLLFVCMVALIGLVVGYLSHP 300
            REKD+LK ELE+L++K  ++R Q GFPLLFVC+V+++ + VGY  HP
Sbjct: 231 IREKDLLKQELEMLKKKIKMKRAQEGFPLLFVCVVSIVSMAVGYYIHP 278

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449517920|ref|XP_004165992.1| PREDICTED: vesicle-associated protein 2-2-like [Cucumis sativus]

 Score =  168 bits (426), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 118/333 (35%), Positives = 182/333 (54%), Gaps = 50/333 (15%)

Query: 14  CKTQFTMQAQRVAPPDLQCKDKFLIQGIVVPFGTSDEDITSDMFAKDSGKYVEEKKLRVI 73
           C+    MQAQR APPD+ CKDKFLIQ  +VP G ++EDIT+ MF+KD GKY+EE KL+V 
Sbjct: 64  CEFSVIMQAQRAAPPDMLCKDKFLIQSTIVPSGITEEDITASMFSKDGGKYIEEDKLKVA 123

Query: 74  LMSPPQSPVLLPRNG----------ELKQDSSP--------ETSLQKDRALSG------V 109
           L+SP  SP+L P +G          +L +DS P        ET   KD+  +       +
Sbjct: 124 LISPLNSPILSPSDGALDARMDDVMKLNEDSGPLSDGMDTNETPKLKDQNGASDEGERTI 183

Query: 110 ENIPPGDGVAANAE---VFETAKFADELTETKDLQWLENAKERDESRAAKDVQM------ 160
           E + P D   A  E     E +K  D    +K+    E  K RD++RA K+ ++      
Sbjct: 184 EALKPSDQNGAFREEVLPHEFSKLKDPNETSKEELPREALKPRDQNRALKEEELSVESPT 243

Query: 161 ------------FGTTNVTNKLREAKDVQTFESSKDIDELISAAEDEQSRPAEDASELKP 208
                       +G++++ N + + K  +  + S +++  +S    +++   +  +EL+P
Sbjct: 244 KKVQNGALKWGAYGSSHLENPVPDTKFPEDADESLELNNSMSRL--QKTAEIKQGTELEP 301

Query: 209 --AKDILELKLAKDFEELKLKLNVMDSQLREAEHTIRKLMEARKLATREKDMLKHELEVL 266
              K   +L+L KD +E+K KL+ ++ +L EA+ TI  L EAR+L+ +E  +LK +L  L
Sbjct: 302 LKLKKAEQLQLVKDIDEMKSKLHEIELKLGEAQGTISMLSEARRLSAQEVKILKEKLLEL 361

Query: 267 RRKSNLRRVQVGFPLLFVCMVALIGLVVGYLSH 299
            R+      QVGFP LF+CMVALI +V G++ H
Sbjct: 362 SRRGRASN-QVGFPPLFICMVALICIVFGFVLH 393

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	307
TAIR|locus:2101766	256	VAP27-1 "VAMP/SYNAPTOBREVIN-AS	0.276	0.332	0.448	3.1e-26
TAIR|locus:2126921	239	AT4G00170 [Arabidopsis thalian	0.270	0.347	0.454	5.2e-25
TAIR|locus:2171594	220	AT5G47180 [Arabidopsis thalian	0.208	0.290	0.5	3.9e-24
TAIR|locus:2025585	386	VAP27-2 "vamp/synaptobrevin-as	0.684	0.544	0.320	2.7e-22
TAIR|locus:2055557	239	PVA12 "plant VAP homolog 12" [	0.387	0.497	0.414	9.5e-18
TAIR|locus:2008231	637	AT1G51270 [Arabidopsis thalian	0.325	0.156	0.411	3.5e-11
TAIR|locus:2061461	149	AT2G23830 [Arabidopsis thalian	0.218	0.449	0.449	3.8e-10
UNIPROTKB|F1MNT4	1798	LAMB1 "Uncharacterized protein	0.706	0.120	0.233	0.00047
UNIPROTKB|G4MPI2	1620	MGG_05727 "Ankyrin repeat prot	0.680	0.129	0.255	0.00054
UNIPROTKB|E1BKT9	2889	DSP "Uncharacterized protein"	0.651	0.069	0.243	0.0006

TAIR|locus:2101766 VAP27-1 "VAMP/SYNAPTOBREVIN-ASSOCIATED PROTEIN 27-1" [Arabidopsis thaliana (taxid:3702)]

 Score = 204 (76.9 bits), Expect = 3.1e-26, Sum P(2) = 3.1e-26
 Identities = 39/87 (44%), Positives = 59/87 (67%)

Query:    14 CKTQFTMQAQRVAPPDLQCKDKFLIQGIVVPFGTSDEDITSDMFAKDSGKYVEEKKLRVI 73
             C+   TMQAQ+ AP D+QCKDKFL+QG++   G + +++T +MF+K++G  VEE KLRV 
Sbjct:    81 CEVLVTMQAQKEAPSDMQCKDKFLLQGVIASPGVTAKEVTPEMFSKEAGHRVEETKLRVT 140

Query:    74 LMSPPQSPVLLPRNGELKQDSSPETSL 100
              ++PP+ P  +    E  + SSP  S+
Sbjct:   141 YVAPPRPPSPVHEGSE--EGSSPRASV 165

GO:0005198 "structural molecule activity" evidence=IEA

GO:0005634 "nucleus" evidence=ISM;IDA

GO:0005789 "endoplasmic reticulum membrane" evidence=IDA

GO:0046907 "intracellular transport" evidence=TAS

GO:0000326 "protein storage vacuole" evidence=IDA

GO:0005515 "protein binding" evidence=IPI

GO:0016021 "integral to membrane" evidence=IDA

GO:0005783 "endoplasmic reticulum" evidence=IDA

GO:0005886 "plasma membrane" evidence=IDA

GO:0005829 "cytosol" evidence=IDA

GO:0000911 "cytokinesis by cell plate formation" evidence=RCA

GO:0006499 "N-terminal protein myristoylation" evidence=RCA

GO:0006605 "protein targeting" evidence=RCA

GO:0006623 "protein targeting to vacuole" evidence=RCA

GO:0006886 "intracellular protein transport" evidence=RCA

GO:0007030 "Golgi organization" evidence=RCA

GO:0007033 "vacuole organization" evidence=RCA

GO:0010359 "regulation of anion channel activity" evidence=RCA

GO:0016192 "vesicle-mediated transport" evidence=RCA

TAIR|locus:2126921 AT4G00170 [Arabidopsis thaliana (taxid:3702)]

 Score = 192 (72.6 bits), Expect = 5.2e-25, Sum P(2) = 5.2e-25
 Identities = 40/88 (45%), Positives = 60/88 (68%)

Query:    14 CKTQFTMQAQRVAPPDLQCKDKFLIQGIVVPFGTSDEDITSDMFAKDSGKYVEEKKLRVI 73
             C    TMQAQ+ AP D+QCKDKFL+Q +VV  GT+ +++ ++MF K++G+ +E+ KLRV+
Sbjct:    66 CNVTVTMQAQKEAPLDMQCKDKFLVQTVVVSDGTTSKEVLAEMFNKEAGRVIEDFKLRVV 125

Query:    74 LM-SPPQSPVLLPRNGELKQDSSPETSL 100
              + + P SPV  P   E  + +SP  SL
Sbjct:   126 YIPANPPSPV--PEGSE--EGNSPMASL 149

GO:0005198 "structural molecule activity" evidence=IEA;ISS

GO:0008150 "biological_process" evidence=ND

GO:0006499 "N-terminal protein myristoylation" evidence=RCA

GO:0005783 "endoplasmic reticulum" evidence=IDA

TAIR|locus:2171594 AT5G47180 [Arabidopsis thaliana (taxid:3702)]

 Score = 168 (64.2 bits), Expect = 3.9e-24, Sum P(2) = 3.9e-24
 Identities = 32/64 (50%), Positives = 44/64 (68%)

Query:    14 CKTQFTMQAQRVAPPDLQCKDKFLIQGIVVPFGTSDEDITSDMFAKDSGKYVEEKKLRVI 73
             C  + T+QAQR  PPD+QCKDKFL+Q  +VP  T  +++  D F KDSGK + E KL+V 
Sbjct:    68 CIIRVTLQAQREYPPDMQCKDKFLLQSTIVPPHTDVDELPQDTFTKDSGKTLTECKLKVS 127

Query:    74 LMSP 77
              ++P
Sbjct:   128 YITP 131

GO:0005198 "structural molecule activity" evidence=IEA;ISS

GO:0005886 "plasma membrane" evidence=IDA

GO:0006612 "protein targeting to membrane" evidence=RCA

GO:0009963 "positive regulation of flavonoid biosynthetic process" evidence=RCA

GO:0010363 "regulation of plant-type hypersensitive response" evidence=RCA

GO:0005783 "endoplasmic reticulum" evidence=IDA

TAIR|locus:2025585 VAP27-2 "vamp/synaptobrevin-associated protein 27-2" [Arabidopsis thaliana (taxid:3702)]

 Score = 259 (96.2 bits), Expect = 2.7e-22, P = 2.7e-22
 Identities = 75/234 (32%), Positives = 125/234 (53%)

Query:    75 MSPPQSP---VLLPR---NGELKQ-DSSPETSLQKDRALSGVENIPPGDGVAANAEVFET 127
             ++PPQ     V  PR   + ELK  D++ E    K   +  VE+    + + A  + +++
Sbjct:   161 LAPPQYEGEIVKEPRMVGHDELKAADNAKELKTPKMATVDFVEDRYTANDLKATKDSYDS 220

Query:   128 AKFADELTETKDLQWLENAKERDESRAAKDVQMFGTTNVTNKLREAKDV---QTFESSKD 184
             ++ A E         + + K+ D+ RA K      TTN+   +++A D+   Q F +   
Sbjct:   221 SRMAKET----GFDPIRSHKDADDGRAIK-----ATTNLDAPMKKAMDLPRDQGFTNGIA 271

Query:   185 IDE--LISAAEDEQSRPAEDASELKPAKDILELKLAKDFEELKLKLNVMDSQLREAEHTI 242
             +D    IS   D       D   ++    + ELKL KD EE+KLK++ ++S+L++A+ TI
Sbjct:   272 VDSEPKISKERDVVQLQKTDGQNVR---GLDELKLVKDIEEMKLKVDALESKLKQADSTI 328

Query:   243 RKLMEARKLATREKDMLKHELEVLRRKSNLRRVQVGFPLLFVCMVALIGLVVGY 296
              KLME R ++++ +  L+HEL  LR K  ++ V  GFPLL+VC+VA I  V+G+
Sbjct:   329 SKLMEERSISSQHRQSLQHELAELRTKKIVKEVHNGFPLLYVCVVAFIAYVIGH 382

GO:0005198 "structural molecule activity" evidence=IEA

GO:0005789 "endoplasmic reticulum membrane" evidence=IDA

GO:0046907 "intracellular transport" evidence=TAS

GO:0005886 "plasma membrane" evidence=IDA

TAIR|locus:2055557 PVA12 "plant VAP homolog 12" [Arabidopsis thaliana (taxid:3702)]

 Score = 216 (81.1 bits), Expect = 9.5e-18, P = 9.5e-18
 Identities = 51/123 (41%), Positives = 72/123 (58%)

Query:    19 TMQAQRVAPPDLQCKDKFLIQGIVVPFGTSDEDITSDMFAKDSGKYVEEKKLRVILMSPP 78
             TMQAQ+ AP DLQCKDKFL+Q +V   G + +D+T +MF+K++G  VEE KLRV+ ++PP
Sbjct:    69 TMQAQKEAPADLQCKDKFLLQCVVASPGATPKDVTHEMFSKEAGHRVEETKLRVVYVAPP 128

Query:    79 QSPVLLPRNGELKQDSSPETSLQKDRALSGVENIP--PGDGVAANAEVFETAKFADELTE 136
             + P  + R G  ++ SSP  S+  +   S     P    D V A     E      +LTE
Sbjct:   129 RPPSPV-REGS-EEGSSPRASVSDNGNASDFTAAPRFSADRVDAQDNSSEARALVTKLTE 186

Query:   137 TKD 139
              K+
Sbjct:   187 EKN 189

GO:0005198 "structural molecule activity" evidence=IEA;ISS

GO:0005886 "plasma membrane" evidence=IDA

GO:0005783 "endoplasmic reticulum" evidence=IDA

GO:0005634 "nucleus" evidence=IDA

GO:0005829 "cytosol" evidence=IDA

GO:0005515 "protein binding" evidence=IPI

GO:0006605 "protein targeting" evidence=IDA

GO:0030968 "endoplasmic reticulum unfolded protein response" evidence=RCA

GO:0046482 "para-aminobenzoic acid metabolic process" evidence=RCA

GO:0046777 "protein autophosphorylation" evidence=RCA

TAIR|locus:2008231 AT1G51270 [Arabidopsis thaliana (taxid:3702)]

 Score = 181 (68.8 bits), Expect = 3.5e-11, P = 3.5e-11
 Identities = 44/107 (41%), Positives = 64/107 (59%)

Query:    14 CKTQFTMQAQRVAPPDLQCKDKFLIQGIVVPFGTSDEDITSDMFAKDSGKYVEEKKLRVI 73
             C+    MQA + AP D QCKDK L Q  VV  GT D+++TS+MF+K++G  VEE   ++I
Sbjct:    65 CEVLVVMQALKEAPADRQCKDKLLFQCKVVEPGTMDKEVTSEMFSKEAGHRVEETIFKII 124

Query:    74 LMSPPQ--SPVLLPRNGELKQDSSPETSLQKDRALSGVENIPPGDGV 118
              ++PPQ  SPV   + G L+  SSP  S+  D+  +    + P  G+
Sbjct:   125 YVAPPQPQSPV---QEG-LEDGSSPSASVS-DKGNASEVFVGPSVGI 166

GO:0005198 "structural molecule activity" evidence=IEA;ISS

GO:0005622 "intracellular" evidence=IEA

GO:0005737 "cytoplasm" evidence=ISM

GO:0007165 "signal transduction" evidence=IEA

TAIR|locus:2061461 AT2G23830 [Arabidopsis thaliana (taxid:3702)]

 Score = 149 (57.5 bits), Expect = 3.8e-10, P = 3.8e-10
 Identities = 31/69 (44%), Positives = 45/69 (65%)

Query:     6 NY--ISKEILCKTQFTMQAQRVAPPDLQCKDKFLIQGIVVPFGTSDEDITSDMFAKDSGK 63
             NY  I  +  CK   TMQAQ+  P D+Q  +KF+IQ ++   G + +++T +MF+K+SG 
Sbjct:    55 NYGLILPKSTCKVLVTMQAQKEVPSDMQSFEKFMIQSVLASPGVTAKEVTREMFSKESGH 114

Query:    64 YVEEKKLRV 72
              VEE KLRV
Sbjct:   115 VVEETKLRV 123

GO:0005198 "structural molecule activity" evidence=IEA;ISS

GO:0008150 "biological_process" evidence=ND

GO:0042991 "transcription factor import into nucleus" evidence=RCA

UNIPROTKB|F1MNT4 LAMB1 "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 123 (48.4 bits), Expect = 0.00047, P = 0.00047
 Identities = 53/227 (23%), Positives = 106/227 (46%)

Query:    52 ITSDMFAKDSGKYVEEKKLRVILMSPPQSPVLLPRN--GELKQDSSPETSLQKDRALSGV 109
             +T D    DS + V  + L++ + S PQ    L  +    ++  S  E  LQ+  A    
Sbjct:  1523 LTQDSADLDSIEAVANEVLKMEMPSTPQQLQNLTEDIRERVESLSQVEVILQQSAADIAR 1582

Query:   110 ENIPPGDGVAANAEVFETAKFADELTET-KDLQWLENAKERDESRAAKDVQMFGTTNVTN 168
               I   +   A+    +    AD + E  ++ +  + A E+   +A +D+Q  GT N+  
Sbjct:  1583 AEILLEEAQKASKSATDVKVTADMVREALEEAEKAQIAAEKAIKQADEDIQ--GTQNLLT 1640

Query:   169 KLRE---AKDVQTFESSKDIDELISAAEDEQSRPAEDASELKPAKDILELKLAKDFEELK 225
              +     A +   F +S+ I EL    E+ + + A+++ E +  + ++   + +  E++K
Sbjct:  1641 SIESETAASEETLFNASQRISELERNVEELKRKAAQNSGEAEYIEKVV-YTVKQSAEDVK 1699

Query:   226 LKL-NVMDSQLREAEHTIRKLMEARKLATREKDMLKHELEVLRRKSN 271
               L N +D + ++ E+ I K  E    A R+ +ML++E + L  ++N
Sbjct:  1700 KTLDNELDEKYKKVENLIAKKTEESADARRKAEMLQNEAKTLLAQAN 1746

GO:0048471 "perinuclear region of cytoplasm" evidence=IEA

GO:0043259 "laminin-10 complex" evidence=IEA

GO:0043208 "glycosphingolipid binding" evidence=IEA

GO:0042476 "odontogenesis" evidence=IEA

GO:0034446 "substrate adhesion-dependent cell spreading" evidence=IEA

GO:0031175 "neuron projection development" evidence=IEA

GO:0030335 "positive regulation of cell migration" evidence=IEA

GO:0019899 "enzyme binding" evidence=IEA

GO:0016477 "cell migration" evidence=IEA

GO:0007566 "embryo implantation" evidence=IEA

GO:0007162 "negative regulation of cell adhesion" evidence=IEA

GO:0005615 "extracellular space" evidence=IEA

GO:0005606 "laminin-1 complex" evidence=IEA

GO:0005201 "extracellular matrix structural constituent" evidence=IEA

GO:0005178 "integrin binding" evidence=IEA

UNIPROTKB|G4MPI2 MGG_05727 "Ankyrin repeat protein" [Magnaporthe oryzae 70-15 (taxid:242507)]

 Score = 122 (48.0 bits), Expect = 0.00054, P = 0.00054
 Identities = 58/227 (25%), Positives = 97/227 (42%)

Query:    50 EDITSDMFAKDSGKYVEEKKLRVILMSPPQSPVLLPRNGEL--KQDSSPETSLQKDRALS 107
             + IT+D   KDSGK       R +++    + V +   G +     + PE    + +A +
Sbjct:   995 DSITADRERKDSGKNKPASLDRNVVVKNEDTDVEMRDVGSIIPAATAPPEPEKTEGKAKT 1054

Query:   108 GVENIPPGDGVAANAEVFETAKFADELTETKDLQWLENAKERDESRAAKDVQMFGTTNVT 167
               E     +  A   E  E  + A+E  + K  +  E     +E +  ++ +        
Sbjct:  1055 QAEIEAEEEAEARRLEEEEDMRIAEE-EKRKQREERERRGREEEQKRKREAEE------A 1107

Query:   168 NKLREAKDVQTFESSKDIDELISAAEDEQSRPAEDASELKPAKDILELKLAKDFEELKLK 227
              K R+A+  +     K+ +E    AE+E+ R   +A EL+  K+  E +  K+ EE K K
Sbjct:  1108 EKRRKAEQEEQERRRKEEEERKRKAEEERKRKEAEAEELRKRKEE-EDRRRKEEEEQKRK 1166

Query:   228 LNVMDSQLREAEHTIRKLMEARKLATREKDMLKHELEVLRRKSNLRR 274
                   ++REAE       EAR+ A  E++  K E E   RK  L R
Sbjct:  1167 AEEEAKRIREAE-------EARQRA-EEEERKKREEEERLRKEQLER 1205

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

UNIPROTKB|E1BKT9 DSP "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 124 (48.7 bits), Expect = 0.00060, P = 0.00060
 Identities = 54/222 (24%), Positives = 107/222 (48%)

Query:    65 VEEKKLRVILMSPPQSPVLLPRNGELKQDSSPETSLQKDRALSGVENIPPGDGVAANAEV 124
             +E ++L+ +  S  +  ++L    EL+Q       LQ+ R  S  ++    D  A  AE+
Sbjct:  1711 IEIERLQSLTESLTKEHLMLEE--ELRQLRLEYDDLQRGR--SEADH----DKNATIAEL 1762

Query:   125 FETAKFADELTETKDLQWLENAKERDESRAAKDVQMFG--TTNVTNKLREAKD--VQTFE 180
                 + ++    T +LQ L N  +R+     ++++ F       +N+++E+K+   Q  +
Sbjct:  1763 RNQLQISNN--RTLELQGLINDLQRERENLRQEIERFQKQALEASNRIQESKNQCTQVVQ 1820

Query:   181 SSKDIDELISAAEDEQSRPAEDASELKPAKDILE----LKLAKDFEELKLK--LNVMDSQ 234
               + +   I   E +++R      EL  AK  LE    LK   + E+ +++  LN   +Q
Sbjct:  1821 ERESLLVKIKVLEQDKARLQRLEEELSRAKTTLEAESRLKQRLECEKQQIQNDLNQWKTQ 1880

Query:   235 LREAEHTIRKLMEARKLATREKDMLKHELEVLRRKSNLRRVQ 276
                 E  IRK+   R+ + REK+ L+ E+E  R ++ ++R++
Sbjct:  1881 YSRKEEAIRKIESEREKSEREKNSLRSEIE--RLQAEIKRIE 1920

GO:0097110 "scaffold protein binding" evidence=IEA

GO:0086091 "regulation of heart rate by cardiac conduction" evidence=IEA

GO:0086069 "bundle of His cell to Purkinje myocyte communication" evidence=IEA

GO:0086005 "regulation of ventricular cardiac muscle cell action potential" evidence=IEA

GO:0071896 "protein localization to adherens junction" evidence=IEA

GO:0045109 "intermediate filament organization" evidence=IEA

GO:0043588 "skin development" evidence=IEA

GO:0034332 "adherens junction organization" evidence=IEA

GO:0030674 "protein binding, bridging" evidence=IEA

GO:0030216 "keratinocyte differentiation" evidence=IEA

GO:0030057 "desmosome" evidence=IEA

GO:0018149 "peptide cross-linking" evidence=IEA

GO:0016337 "cell-cell adhesion" evidence=IEA

GO:0016323 "basolateral plasma membrane" evidence=IEA

GO:0014704 "intercalated disc" evidence=IEA

GO:0005882 "intermediate filament" evidence=IEA

GO:0005739 "mitochondrion" evidence=IEA

GO:0005198 "structural molecule activity" evidence=IEA

GO:0005080 "protein kinase C binding" evidence=IEA

GO:0003223 "ventricular compact myocardium morphogenesis" evidence=IEA

GO:0002934 "desmosome organization" evidence=IEA

GO:0001533 "cornified envelope" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	307
PTZ00121	2084	PTZ00121, PTZ00121, MAEBL; Provisional	0.003

>gnl|CDD|173412 PTZ00121, PTZ00121, MAEBL; Provisional

 Score = 39.0 bits (90), Expect = 0.003
 Identities = 33/153 (21%), Positives = 76/153 (49%), Gaps = 5/153 (3%)

Query: 126  ETAKFADELTETKDLQWLENAKERDESRAAKDVQMFGTTNVTNKLREAKDVQTFESSKDI 185
            E  K ADE  + ++ +  + AK+ +E++ A + +        ++L++A++++  E  K  
Sbjct: 1507 EAKKKADEAKKAEEAKKADEAKKAEEAKKADEAKKAEEKKKADELKKAEELKKAEEKKKA 1566

Query: 186  DELISAAEDEQS--RPAEDASELKPAKDILELKLAKDFEELKLKLNVMDSQLREAEHTIR 243
            +E   A ED+    R AE+A + + A+    +KL ++ +++K +      + +     ++
Sbjct: 1567 EEAKKAEEDKNMALRKAEEAKKAEEARIEEVMKLYEEEKKMKAEEAKKAEEAKIKAEELK 1626

Query: 244  KLMEARKLATREKDMLKHELEVLRRKSNLRRVQ 276
            K  E +K   + K   K E E  ++   L++ +
Sbjct: 1627 KAEEEKKKVEQLK---KKEAEEKKKAEELKKAE 1656

Length = 2084

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	307
COG5066	242	SCS2 VAMP-associated protein involved in inositol	99.7
KOG0439	218	consensus VAMP-associated protein involved in inos	99.53
PF00635	109	Motile_Sperm: MSP (Major sperm protein) domain; In	98.61
PRK10884	206	SH3 domain-containing protein; Provisional	96.93
PF14197	69	Cep57_CLD_2: Centrosome localisation domain of PPC	90.13
PRK10884	206	SH3 domain-containing protein; Provisional	87.91
PRK04406	75	hypothetical protein; Provisional	86.25
PF04102	69	SlyX: SlyX; InterPro: IPR007236 The SlyX protein h	85.39
PRK04325	74	hypothetical protein; Provisional	84.3
PRK10132	108	hypothetical protein; Provisional	83.7
PRK10404	101	hypothetical protein; Provisional	82.62
PF05957	94	DUF883: Bacterial protein of unknown function (DUF	81.74

>COG5066 SCS2 VAMP-associated protein involved in inositol metabolism [Intracellular trafficking and secretion]

Probab=99.70  E-value=1e-17  Score=153.35  Aligned_cols=76  Identities=25%  Similarity=0.413  Sum_probs=70.5

Q ss_pred             CCccceecCCCeEEEEEEecCCCCCC-CCCCcCceeEEEEEeeCCCCCCcccchhhhcccCCCcceeeeeEEEEeCCC
Q 021780            2 LTGKNYISKEILCKTQFTMQAQRVAP-PDLQCKDKFLIQGIVVPFGTSDEDITSDMFAKDSGKYVEEKKLRVILMSPP   78 (307)
Q Consensus         2 ~PNsGVI~PgsT~~VsVtLQAqkeaP-PDmqCKDKFLVQSvvVp~g~t~~DIt~dmf~Ke~g~~V~E~KLRVVyv~P~   78 (307)
                      .||.|+|.|+++++|+|+||++++.| ||+||||||||||+..++..+-+|+ .|+|+..+++-|-++||||+|.--.
T Consensus        48 RPN~g~Iep~stv~VeVilq~l~eEpapdfKCrdKFLiqs~~~~~~l~g~d~-ad~wt~~sk~~i~~rkIrcvyse~~  124 (242)
T COG5066          48 RPNMGLIEPMSTVEVEVILQGLTEEPAPDFKCRDKFLIQSYRFDWRLSGSDF-ADHWTSSSKKPIWTRKIRCVYSEEE  124 (242)
T ss_pred             cCCCceeccCCeeEEEEEeeccccCCCCCccccceeEEEEeccChhhccchH-HHHHHhhccccchhhheeEEeeccc
Confidence            59999999999999999999999999 9999999999999999998888888 7889888888899999999998443

>KOG0439 consensus VAMP-associated protein involved in inositol metabolism [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.53  E-value=1.7e-14  Score=127.77  Aligned_cols=81  Identities=28%  Similarity=0.465  Sum_probs=67.9

Q ss_pred             CCCccceecCCCeEEEEEEecCCCCCCCCCCcCceeEEEEEeeCCCCCCcccchhhhc--ccCCCcceeeeeEEEEeCCC
Q 021780            1 MLTGKNYISKEILCKTQFTMQAQRVAPPDLQCKDKFLIQGIVVPFGTSDEDITSDMFA--KDSGKYVEEKKLRVILMSPP   78 (307)
Q Consensus         1 ~~PNsGVI~PgsT~~VsVtLQAqkeaPPDmqCKDKFLVQSvvVp~g~t~~DIt~dmf~--Ke~g~~V~E~KLRVVyv~P~   78 (307)
                      +-||.|+|.||++|+|.|++||++..|+|++|||||+||++.++.+. ..++ .+.|.  +..++.+.+.|++|+|+.|+
T Consensus        55 VrP~~G~i~p~~t~~i~v~~q~~~~~P~d~~~r~kF~v~~~~~~~~~-~~~~-~~~~~~~k~~~~~~~~~k~~~~~~~~~  132 (218)
T KOG0439|consen   55 VRPNGGVIDPGSTVEIEVTHQPFEKSPPDFKSRHKFLIQSLKAPPPT-TRDV-VDLWKFQKETPKESFETKLRVVFVAPT  132 (218)
T ss_pred             EcCCcceECCCCcEEEEEEeccCccCchhhcccceEEEEEEecCCcc-ccch-hhhccccccccccccceeeEEEeeCCC
Confidence            35999999999999999999999888999999999999999999872 2222 33443  33489999999999999998


Q ss_pred             CCCCc
Q 021780           79 QSPVL   83 (307)
Q Consensus        79 ~pP~~   83 (307)
                      .++..
T Consensus       133 ~~~~~  137 (218)
T KOG0439|consen  133 ETDSV  137 (218)
T ss_pred             CCccc
Confidence            87643

>PF00635 Motile_Sperm: MSP (Major sperm protein) domain; InterPro: IPR000535 Major sperm proteins (MSP) are central components in molecular interactions underlying sperm motility in Caenorhabditis elegans, whose sperm employ an amoebae-like crawling motion using a MSP-containing lamellipod, rather than the flagellar-based swimming motion associated with other sperm

Probab=98.61  E-value=6.3e-08  Score=76.20  Aligned_cols=57  Identities=28%  Similarity=0.360  Sum_probs=41.9

Q ss_pred             CCccceecCCCeEEEEEEecCCCCCCCCCCcCceeEEEEEeeCCCCCCc-ccchhhhcc
Q 021780            2 LTGKNYISKEILCKTQFTMQAQRVAPPDLQCKDKFLIQGIVVPFGTSDE-DITSDMFAK   59 (307)
Q Consensus         2 ~PNsGVI~PgsT~~VsVtLQAqkeaPPDmqCKDKFLVQSvvVp~g~t~~-DIt~dmf~K   59 (307)
                      .|+.|+|.||+++.|.|+++++...+.+.. +|||+||++.++++.... +....+|..
T Consensus        49 ~P~~G~i~p~~~~~i~I~~~~~~~~~~~~~-~dkf~I~~~~~~~~~~~~~~~~~~~~~~  106 (109)
T PF00635_consen   49 KPSYGIIEPGESVEITITFQPFDFEPSNKK-KDKFLIQSIVVPDNATDPKKDFKQIWKN  106 (109)
T ss_dssp             ESSEEEE-TTEEEEEEEEE-SSSTTTTSTS-SEEEEEEEEEE-TT-SSSHHHHHCCHHH
T ss_pred             cCCCEEECCCCEEEEEEEEEecccCCCCCC-CCEEEEEEEEcCCCccchhhhHHHHHhc
Confidence            499999999999999999999987765544 999999999998875443 333445544

These proteins oligomerise to form an extensive filament system that extends from sperm villipoda, along the leading edge of the pseudopod. About 30 MSP isoforms may exist in C. elegans. MSPs form a fibrous network, whereby MSP dimers form helical subfilaments that coil around one another to produce filaments, which in turn form supercoils to produce bundles. The crystal structure of MSP from C. elegans reveals an immunoglobulin (Ig)-like seven-stranded beta sandwich fold []. ; GO: 0005198 structural molecule activity; PDB: 1MSP_A 3MSP_B 2BVU_B 2MSP_C 1Z9O_F 1Z9L_A 3IKK_A 1WIC_A 2CRI_A 2RR3_A ....

>PRK10884 SH3 domain-containing protein; Provisional

Probab=96.93  E-value=0.0051  Score=56.43  Aligned_cols=71  Identities=15%  Similarity=0.206  Sum_probs=48.6

Q ss_pred             hhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccCCc-chhHHHHHHHHHHHHHHHh
Q 021780          228 LNVMDSQLREAEHTIRKLMEARKLATREKDMLKHELEVLRRKSNLRRVQVGF-PLLFVCMVALIGLVVGYLS  298 (307)
Q Consensus       228 l~~~e~kl~Ea~~~I~kL~EEr~~aiqe~~kLqqEL~lLrr~~~~~~~~~GF-pllFV~~VaLlGi~lGyll  298 (307)
                      ..+++.++.++...|..|.+|.....+|..++|+|++.|+.+......+.=+ -|++=..|+++|++||.++
T Consensus       120 ~~~l~~~~~~~~~~~~~L~~~n~~L~~~l~~~~~~~~~l~~~~~~~~~~~~~~wf~~Gg~v~~~GlllGlil  191 (206)
T PRK10884        120 TAEMQQKVAQSDSVINGLKEENQKLKNQLIVAQKKVDAANLQLDDKQRTIIMQWFMYGGGVAGIGLLLGLLL  191 (206)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHchHHHHHHHHHHHHh
Confidence            3445666677778888899999999999999999988877653322111112 2334467788888888875

>PF14197 Cep57_CLD_2: Centrosome localisation domain of PPC89

Probab=90.13  E-value=1.6  Score=34.00  Aligned_cols=49  Identities=27%  Similarity=0.348  Sum_probs=38.8

Q ss_pred             HHHHHHhhhhhhhhhHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHhh
Q 021780          221 FEELKLKLNVMDSQLREAEHTIRKLMEARKL-------ATREKDMLKHELEVLRRK  269 (307)
Q Consensus       221 ~~elk~kl~~~e~kl~Ea~~~I~kL~EEr~~-------aiqe~~kLqqEL~lLrr~  269 (307)
                      +..|..+|..+..|++--...+..|+-||+.       |.+++++|+.|++.||++
T Consensus         7 ~~~Lr~rLd~~~rk~~~~~~~~k~L~~ERd~~~~~l~~a~~e~~~Lk~E~e~L~~e   62 (69)
T PF14197_consen    7 IATLRNRLDSLTRKNSVHEIENKRLRRERDSAERQLGDAYEENNKLKEENEALRKE   62 (69)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3446667777788887778888889999965       556789999999999986

>PRK10884 SH3 domain-containing protein; Provisional

Probab=87.91  E-value=2.3  Score=39.20  Aligned_cols=69  Identities=22%  Similarity=0.226  Sum_probs=35.2

Q ss_pred             HhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccc-ccCCcchhHHHHHH-HHHHHHHHHh
Q 021780          226 LKLNVMDSQLREAEHTIRKLMEARKLATREKDMLKHELEVLRRKSNLRR-VQVGFPLLFVCMVA-LIGLVVGYLS  298 (307)
Q Consensus       226 ~kl~~~e~kl~Ea~~~I~kL~EEr~~aiqe~~kLqqEL~lLrr~~~~~~-~~~GFpllFV~~Va-LlGi~lGyll  298 (307)
                      .++...+....+.+.--.+|++|-..+-.+++.|+.|++-+++....+- -.||.    |+++| |||++|-||.
T Consensus       125 ~~~~~~~~~~~~L~~~n~~L~~~l~~~~~~~~~l~~~~~~~~~~~~~~wf~~Gg~----v~~~GlllGlilp~l~  195 (206)
T PRK10884        125 QKVAQSDSVINGLKEENQKLKNQLIVAQKKVDAANLQLDDKQRTIIMQWFMYGGG----VAGIGLLLGLLLPHLI  195 (206)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHchH----HHHHHHHHHHHhcccc
Confidence            3344444444444444455555555555555555555555554322110 12553    33333 3899999997

>PRK04406 hypothetical protein; Provisional

Probab=86.25  E-value=4.3  Score=32.05  Aligned_cols=50  Identities=22%  Similarity=0.270  Sum_probs=43.7

Q ss_pred             HHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q 021780          222 EELKLKLNVMDSQLREAEHTIRKLMEARKLATREKDMLKHELEVLRRKSN  271 (307)
Q Consensus       222 ~elk~kl~~~e~kl~Ea~~~I~kL~EEr~~aiqe~~kLqqEL~lLrr~~~  271 (307)
                      .++..++..||.++.--+.+|..|++.=-.--++.+.|+.+|..|+.+-.
T Consensus         7 ~~le~Ri~~LE~~lAfQE~tIe~LN~~v~~Qq~~I~~L~~ql~~L~~rl~   56 (75)
T PRK04406          7 EQLEERINDLECQLAFQEQTIEELNDALSQQQLLITKMQDQMKYVVGKVK   56 (75)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            35667899999999999999999999988888899999999999977543

>PF04102 SlyX: SlyX; InterPro: IPR007236 The SlyX protein has no known function

Probab=85.39  E-value=4.3  Score=31.15  Aligned_cols=48  Identities=23%  Similarity=0.333  Sum_probs=41.1

Q ss_pred             HHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcc
Q 021780          225 KLKLNVMDSQLREAEHTIRKLMEARKLATREKDMLKHELEVLRRKSNL  272 (307)
Q Consensus       225 k~kl~~~e~kl~Ea~~~I~kL~EEr~~aiqe~~kLqqEL~lLrr~~~~  272 (307)
                      ..++..||.|+.-.+.+|..|.+.=-.--++.++|+.+|..|+.+-..
T Consensus         3 e~Ri~~LE~~la~qe~~ie~Ln~~v~~Qq~~I~~L~~~l~~L~~rl~~   50 (69)
T PF04102_consen    3 EERIEELEIKLAFQEDTIEELNDVVTEQQRQIDRLQRQLRLLRERLRE   50 (69)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT---
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            456788999999999999999999999999999999999999987544

It is short, less than 80 amino acids, and its gene is found close to the slyD gene. The SlyX protein has a conserved PPH(Y/W) motif at its C terminus. The protein may be a coiled-coil structure.; PDB: 3EFG_A.

>PRK04325 hypothetical protein; Provisional

Probab=84.30  E-value=4.8  Score=31.54  Aligned_cols=50  Identities=20%  Similarity=0.278  Sum_probs=42.0

Q ss_pred             HHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q 021780          222 EELKLKLNVMDSQLREAEHTIRKLMEARKLATREKDMLKHELEVLRRKSN  271 (307)
Q Consensus       222 ~elk~kl~~~e~kl~Ea~~~I~kL~EEr~~aiqe~~kLqqEL~lLrr~~~  271 (307)
                      +.+..++..||.|+.--+.+|..|.+.=-.--++.+.|+.+|..|+.+-.
T Consensus         5 ~~~e~Ri~~LE~klAfQE~tIe~LN~vv~~Qq~~I~~L~~ql~~L~~rl~   54 (74)
T PRK04325          5 QEMEDRITELEIQLAFQEDLIDGLNATVARQQQTLDLLQAQLRLLYQQMR   54 (74)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34555678899999999999999999988888888999999999976543

>PRK10132 hypothetical protein; Provisional

Probab=83.70  E-value=16  Score=30.69  Aligned_cols=23  Identities=26%  Similarity=0.294  Sum_probs=20.8

Q ss_pred             CcchhHHHHHHHHHHHHHHHhcC
Q 021780          278 GFPLLFVCMVALIGLVVGYLSHP  300 (307)
Q Consensus       278 GFpllFV~~VaLlGi~lGyll~~  300 (307)
                      --||.-|.+.|.+|++||+|+.+
T Consensus        84 ~~Pw~svgiaagvG~llG~Ll~R  106 (108)
T PRK10132         84 ERPWCSVGTAAAVGIFIGALLSL  106 (108)
T ss_pred             hCcHHHHHHHHHHHHHHHHHHhc
Confidence            57999999999999999999864

>PRK10404 hypothetical protein; Provisional

Probab=82.62  E-value=9.3  Score=31.70  Aligned_cols=23  Identities=30%  Similarity=0.325  Sum_probs=19.9

Q ss_pred             CcchhHHHHHHHHHHHHHHHhcC
Q 021780          278 GFPLLFVCMVALIGLVVGYLSHP  300 (307)
Q Consensus       278 GFpllFV~~VaLlGi~lGyll~~  300 (307)
                      --|+--|-+.|.+|++||+|+.+
T Consensus        78 e~Pw~avGiaagvGlllG~Ll~R  100 (101)
T PRK10404         78 EKPWQGIGVGAAVGLVLGLLLAR  100 (101)
T ss_pred             hCcHHHHHHHHHHHHHHHHHHhc
Confidence            37888899999999999999863

>PF05957 DUF883: Bacterial protein of unknown function (DUF883); InterPro: IPR010279 This family consists of several bacterial proteins of unknown function that include the Escherichia coli genes for ElaB, YgaM and YqjD

Probab=81.74  E-value=16  Score=28.91  Aligned_cols=22  Identities=27%  Similarity=0.379  Sum_probs=20.0

Q ss_pred             cchhHHHHHHHHHHHHHHHhcC
Q 021780          279 FPLLFVCMVALIGLVVGYLSHP  300 (307)
Q Consensus       279 FpllFV~~VaLlGi~lGyll~~  300 (307)
                      -|+.-|.+.+.+|++||+|+.+
T Consensus        72 ~P~~svgiAagvG~llG~Ll~R   93 (94)
T PF05957_consen   72 NPWQSVGIAAGVGFLLGLLLRR   93 (94)
T ss_pred             ChHHHHHHHHHHHHHHHHHHhC
Confidence            6999999999999999999974

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	307
1wic_A	152	Hypothetical protein riken cDNA 6030424E15; beta s	5e-08
2cri_A	147	Vesicle-associated membrane protein-associated pro	1e-07
1msp_A	126	MSP, major sperm protein; cytoskeletal protein, ce	6e-07
1z9l_A	128	Vesicle-associated membrane protein-associated pro	6e-06
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	3e-04

>1wic_A Hypothetical protein riken cDNA 6030424E15; beta sandwich fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: b.1.11.2 Length = 152

 Score = 50.5 bits (120), Expect = 5e-08
 Identities = 11/73 (15%), Positives = 22/73 (30%), Gaps = 1/73 (1%)

Query: 18  FTMQAQRVAPPDLQCKDKFLIQGIVVPFGTSDEDITSDMFAKD-SGKYVEEKKLRVILMS 76
             +         +  +D+FLI    +   +         F K+     V E +LR   + 
Sbjct: 78  IDIIVSPHGGLTVSAQDRFLIMAAEMEQSSGTGPAELSQFWKEVPRNKVMEHRLRCHTVE 137

Query: 77  PPQSPVLLPRNGE 89
             +   L+     
Sbjct: 138 SSKPNSLMLSGPS 150

>2cri_A Vesicle-associated membrane protein-associated protein A; VAP-A, VAP-33, beta sandwitch fold, structural genomics, NPPSFA; NMR {Mus musculus} Length = 147

 Score = 48.9 bits (116), Expect = 1e-07
 Identities = 13/55 (23%), Positives = 26/55 (47%), Gaps = 3/55 (5%)

Query: 27  PPDLQCKDKFLIQGIVVPFGTSDEDITSDMFAKDSGKYVEEKKLRVILMSPPQSP 81
            P+ + K KF++Q I  P   SD +    ++ +     + + KLR +   P ++ 
Sbjct: 86  DPNEKSKHKFMVQTIFAPPNISDME---AVWKEAKPDELMDSKLRCVFEMPNEND 137

>1msp_A MSP, major sperm protein; cytoskeletal protein, cell motility protein; 2.50A {Ascaris suum} SCOP: b.1.11.2 PDB: 3msp_A 2bvu_A 2msp_A 1grw_A Length = 126

 Score = 46.8 bits (111), Expect = 6e-07
 Identities = 11/60 (18%), Positives = 17/60 (28%), Gaps = 4/60 (6%)

Query: 14  CKTQFTMQAQRVAPPDLQCKDKFLIQGIVVPFGTSDEDITSDMFAKDSGKYVEEKKLRVI 73
                +      A  D    D+  I+    P G   +    + F  D    V  K L + 
Sbjct: 68  VLMAVSCDTFNAATED-LNNDRITIEWTNTPDGA-AKQFRREWFQGD--GMVRRKNLPIE 123

>1z9l_A Vesicle-associated membrane protein-associated protein A; VAP-A, cytoplasmic domain, protein binding; HET: MSE; 1.70A {Rattus norvegicus} PDB: 1z9o_A 2rr3_A 3ikk_A Length = 128

 Score = 43.8 bits (103), Expect = 6e-06
 Identities = 12/47 (25%), Positives = 23/47 (48%), Gaps = 3/47 (6%)

Query: 27  PPDLQCKDKFLIQGIVVPFGTSDEDITSDMFAKDSGKYVEEKKLRVI 73
            P+ + K KF++Q I  P   SD +    ++ +     + + KLR +
Sbjct: 82  DPNEKSKHKFMVQTIFAPPNISDME---AVWKEAKPDELMDSKLRCV 125

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 41.4 bits (96), Expect = 3e-04
 Identities = 35/265 (13%), Positives = 83/265 (31%), Gaps = 79/265 (29%)

Query: 50  EDITSDM---FAKD-SGKYVEEKKLRVILMSPPQSPVLLPRNGELKQDSSPETSLQKDRA 105
           +DI S     F  +   K V++   + IL       ++           S +      R 
Sbjct: 19  KDILSVFEDAFVDNFDCKDVQDM-PKSILSKEEIDHII----------MSKDAVSGTLRL 67

Query: 106 LSGVENIPPGDGVAANAEVFETAKFADELTETKDLQWLENA---KERDES---------- 152
              + +           E+ +  KF +E+    + ++L +    ++R  S          
Sbjct: 68  FWTLLS--------KQEEMVQ--KFVEEVLR-INYKFLMSPIKTEQRQPSMMTRMYIEQR 116

Query: 153 -RAAKDVQMFGTTNVT-----NKLREA-------------------KDVQTFESSKDIDE 187
            R   D Q+F   NV+      KLR+A                   K     +      +
Sbjct: 117 DRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLS-YK 175

Query: 188 LISAAEDE-----QSRPAEDASELKPAKDILELKLAKDFEELKLKLNVMDSQLREAEHTI 242
           +    + +             + L+  +  L  ++  ++       + +  ++   +  +
Sbjct: 176 VQCKMDFKIFWLNLKNCNSPETVLEMLQK-LLYQIDPNWTSRSDHSSNIKLRIHSIQAEL 234

Query: 243 RKLMEARKLATREKDMLKHELEVLR 267
           R+L++++          ++ L VL 
Sbjct: 235 RRLLKSKP--------YENCLLVLL 251

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	307
1wic_A	152	Hypothetical protein riken cDNA 6030424E15; beta s	99.8
2cri_A	147	Vesicle-associated membrane protein-associated pro	99.78
1z9l_A	128	Vesicle-associated membrane protein-associated pro	99.74
1msp_A	126	MSP, major sperm protein; cytoskeletal protein, ce	99.6
1m1s_A	116	WR4; structural genomics, major sperm protein, bio	99.23
1row_A	109	SSP-19, MSP-domain protein like family member; bet	99.2
3efg_A	78	Protein SLYX homolog; xanthomonas campestris PV. c	85.23
3hnw_A	138	Uncharacterized protein; coiled-coil, structural g	81.43

>1wic_A Hypothetical protein riken cDNA 6030424E15; beta sandwich fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: b.1.11.2

Probab=99.80  E-value=5.1e-20  Score=157.13  Aligned_cols=80  Identities=14%  Similarity=0.194  Sum_probs=70.9

Q ss_pred             CCccceecCCCeEEEEEEecCCCCCCCCCCcCceeEEEEEeeC--CCCCCcccchhhhcccCCCcceeeeeEEEEeCCCC
Q 021780            2 LTGKNYISKEILCKTQFTMQAQRVAPPDLQCKDKFLIQGIVVP--FGTSDEDITSDMFAKDSGKYVEEKKLRVILMSPPQ   79 (307)
Q Consensus         2 ~PNsGVI~PgsT~~VsVtLQAqkeaPPDmqCKDKFLVQSvvVp--~g~t~~DIt~dmf~Ke~g~~V~E~KLRVVyv~P~~   79 (307)
                      -||.|+|+||++++|.|+|||++++    +||||||||++.++  ++.+..|+. ++|++..+..++++||||+|+.+++
T Consensus        66 rP~~GiI~P~~s~~V~V~lq~~~~~----~~kDKFlVqs~~v~~~~~~~~~d~~-~~wk~~~~~~i~e~kLrv~f~~~~~  140 (152)
T 1wic_A           66 KPSNSSCDPGASIDIIVSPHGGLTV----SAQDRFLIMAAEMEQSSGTGPAELS-QFWKEVPRNKVMEHRLRCHTVESSK  140 (152)
T ss_dssp             ESSEEEECTTCEEEEEEEECSSSCC----CSSCCEEEEEEECCSSCCCSHHHHH-HHHHHSCTTTCEEEEECBCCCCSCS
T ss_pred             cCCCcEECCCCeEEEEEEecCcccC----CCCCEEEEEEEEcCCcCCCChhhHH-HHHhccCCCceEEEEEEEEECCCCC
Confidence            5999999999999999999999752    89999999999999  666677884 7998888899999999999999999


Q ss_pred             CCCccCC
Q 021780           80 SPVLLPR   86 (307)
Q Consensus        80 pP~~~p~   86 (307)
                      ||+++..
T Consensus       141 p~s~~~~  147 (152)
T 1wic_A          141 PNSLMLS  147 (152)
T ss_dssp             SSSSCCC
T ss_pred             CCCcccc
Confidence            9876544

>2cri_A Vesicle-associated membrane protein-associated protein A; VAP-A, VAP-33, beta sandwitch fold, structural genomics, NPPSFA; NMR {Mus musculus}

Probab=99.78  E-value=4e-19  Score=150.09  Aligned_cols=76  Identities=20%  Similarity=0.334  Sum_probs=67.5

Q ss_pred             CCccceecCCCeEEEEEEecCCCCCCCCCCcCceeEEEEEeeCCCCCCcccchhhhcccCCCcceeeeeEEEEeCCCCCC
Q 021780            2 LTGKNYISKEILCKTQFTMQAQRVAPPDLQCKDKFLIQGIVVPFGTSDEDITSDMFAKDSGKYVEEKKLRVILMSPPQSP   81 (307)
Q Consensus         2 ~PNsGVI~PgsT~~VsVtLQAqkeaPPDmqCKDKFLVQSvvVp~g~t~~DIt~dmf~Ke~g~~V~E~KLRVVyv~P~~pP   81 (307)
                      -||.|+|+||++++|.|+|||++ .+|+++||||||||++.++++.+  |+ .++|.+..+..++++||||+|+.|++.+
T Consensus        62 rP~~GiI~P~~s~~v~V~l~~~~-~~p~~~~kDKFlVqs~~~~~~~~--d~-~~~wk~~~~~~i~e~kLrv~f~~p~~~~  137 (147)
T 2cri_A           62 RPNSGIIDPGSIVTVSVMLQPFD-YDPNEKSKHKFMVQTIFAPPNIS--DM-EAVWKEAKPDELMDSKLRCVFEMPNEND  137 (147)
T ss_dssp             ESSEEECCTTCEEEEEEEECCCC-CCTTCCSCCCEEEEEEECCTTCC--CH-HHHHHHSCTTTCEEEEEEEEEECSCCSS
T ss_pred             cCCCcEECCCCeEEEEEEECCCc-CCccccCCCEEEEEEEEcCCCcc--cH-HHHhhcCCCCceEEEEEEEEEecCCCCc
Confidence            59999999999999999999996 56778999999999999998643  44 6789888889999999999999888664

>1z9l_A Vesicle-associated membrane protein-associated protein A; VAP-A, cytoplasmic domain, protein binding; HET: MSE; 1.70A {Rattus norvegicus} PDB: 1z9o_A 2rr3_A 3ikk_A

Probab=99.74  E-value=2.8e-18  Score=141.05  Aligned_cols=71  Identities=20%  Similarity=0.315  Sum_probs=63.0

Q ss_pred             CCccceecCCCeEEEEEEecCCCCCCCCCCcCceeEEEEEeeCCCCCCcccchhhhcccCCCcceeeeeEEEEeC
Q 021780            2 LTGKNYISKEILCKTQFTMQAQRVAPPDLQCKDKFLIQGIVVPFGTSDEDITSDMFAKDSGKYVEEKKLRVILMS   76 (307)
Q Consensus         2 ~PNsGVI~PgsT~~VsVtLQAqkeaPPDmqCKDKFLVQSvvVp~g~t~~DIt~dmf~Ke~g~~V~E~KLRVVyv~   76 (307)
                      -||+|+|+||++++|.|+|||++ .+|+++|||||+||++.+++|.+  |+ .++|.+..+..++|+||||+|.+
T Consensus        58 rP~~G~i~P~~s~~v~V~~~~~~-~~p~~~~~dkF~V~s~~~~~~~~--~~-~~~w~~~~~~~i~e~kLrv~f~~  128 (128)
T 1z9l_A           58 RPNSGVIDPGSIVTVSVMLQPFD-YDPNEKSKHKFMVQTIFAPPNIS--DM-EAVWKEAKPDELMDSKLRCVFEM  128 (128)
T ss_dssp             ESCEEEECTTCEEEEEEEECCCC-CCTTCCCCCEEEEEEEECCTTCS--CH-HHHHHSCCGGGCEEEEEEEEEEC
T ss_pred             eCCCcEECCCCeEEEEEEECcCc-CCcccccCCEEEEEEEECCCCcc--hH-HHHhhcCCCCceEEEEEEEEEeC
Confidence            59999999999999999999996 46678999999999999998653  45 68999888889999999999963

>1msp_A MSP, major sperm protein; cytoskeletal protein, cell motility protein; 2.50A {Ascaris suum} SCOP: b.1.11.2 PDB: 3msp_A 2bvu_A 2msp_A 1grw_A

Probab=99.60  E-value=1.4e-15  Score=125.73  Aligned_cols=70  Identities=17%  Similarity=0.191  Sum_probs=61.7

Q ss_pred             CCccceecCCCeEEEEEEecCCCCCCCCCCcCceeEEEEEeeCCCCCCcccchhhhcccCCCcceeeeeEEEEe
Q 021780            2 LTGKNYISKEILCKTQFTMQAQRVAPPDLQCKDKFLIQGIVVPFGTSDEDITSDMFAKDSGKYVEEKKLRVILM   75 (307)
Q Consensus         2 ~PNsGVI~PgsT~~VsVtLQAqkeaPPDmqCKDKFLVQSvvVp~g~t~~DIt~dmf~Ke~g~~V~E~KLRVVyv   75 (307)
                      -||+|+|+||++|+|.|+|||+++.|++++ |||||||++.+|+|.+ +|++.+||.++  ..+..++|+|-|-
T Consensus        56 rP~~Gii~P~~s~~v~V~~q~~~~~~~~~~-kDKf~Vq~~~~p~~~~-~~~~~~wf~~d--~~~~~k~L~V~Yn  125 (126)
T 1msp_A           56 DPPCGVLDPKEKVLMAVSCDTFNAATEDLN-NDRITIEWTNTPDGAA-KQFRREWFQGD--GMVRRKNLPIEYN  125 (126)
T ss_dssp             ESCEEEECTTCEEEEEEEECCCCGGGSCCS-SCEEEEEEEECCTTCC-SSCCTHHHHSS--SCCEEEEEEEEEE
T ss_pred             ECCCeEECCCCEEEEEEEecCCCCCCCccC-CCEEEEEEEECCCCcc-hhhhHHhhcCC--CceEEEEEEEEec
Confidence            599999999999999999999998887755 9999999999999864 78988888653  4689999999995

>1m1s_A WR4; structural genomics, major sperm protein, bioinformatics, PSI, protein structure initiative; 1.80A {Caenorhabditis elegans} SCOP: b.1.11.2

Probab=99.23  E-value=1.6e-11  Score=101.76  Aligned_cols=61  Identities=20%  Similarity=0.187  Sum_probs=49.5

Q ss_pred             CCccceecCCCeEEEEEEecCCCCCCCCCCcCceeEEEEEeeCCCCCCcccchhhhcccCCCcceeeeeEEE
Q 021780            2 LTGKNYISKEILCKTQFTMQAQRVAPPDLQCKDKFLIQGIVVPFGTSDEDITSDMFAKDSGKYVEEKKLRVI   73 (307)
Q Consensus         2 ~PNsGVI~PgsT~~VsVtLQAqkeaPPDmqCKDKFLVQSvvVp~g~t~~DIt~dmf~Ke~g~~V~E~KLRVV   73 (307)
                      -||.|+|+||++++|.|+|||+   |   .|+||||||++.++++..  |. .++|++..+  ..+.+|+++
T Consensus        54 rP~~G~I~Pg~~~~I~I~~q~~---~---~k~DKflVq~~~~~~d~~--d~-~~~fk~~~~--~g~~~i~l~  114 (116)
T 1m1s_A           54 RPVYGFVDAKGKSKLDINRLPG---P---PKEDKIVIQYAEVPAEET--DP-MAPFKAGAQ--QGEIIVKLI  114 (116)
T ss_dssp             ECSEEEECTTCEEEEEEEECSC---C---SCEEEEEEEEEEECTTCC--CT-THHHHTTCC--CEEEEEEEE
T ss_pred             cCCceEECCCCeEEEEEEeCCC---C---CCCCEEEEEEEECCCCCC--CH-HHHHhcCCC--CceEEEEEE
Confidence            4999999999999999999997   2   689999999999997533  32 568887654  577777764

>1row_A SSP-19, MSP-domain protein like family member; beta barrel, structural genomics, PSI, protein structure initiative; 2.00A {Caenorhabditis elegans} SCOP: b.1.11.2

Probab=99.20  E-value=1.9e-11  Score=99.63  Aligned_cols=61  Identities=11%  Similarity=0.062  Sum_probs=47.4

Q ss_pred             CCccceecCCCeEEEEEEecCCCCCCCCCCcCceeEEEEEeeCCCCCCcccchhhhcccCCCcceeeeeEEE
Q 021780            2 LTGKNYISKEILCKTQFTMQAQRVAPPDLQCKDKFLIQGIVVPFGTSDEDITSDMFAKDSGKYVEEKKLRVI   73 (307)
Q Consensus         2 ~PNsGVI~PgsT~~VsVtLQAqkeaPPDmqCKDKFLVQSvvVp~g~t~~DIt~dmf~Ke~g~~V~E~KLRVV   73 (307)
                      -||+|+|+||++++|+|+|||.      ..||||||||++.++++.  .|. .++|++....  .+.+|+++
T Consensus        46 rP~~G~I~P~~~~~i~I~~q~~------~~~~dKflvq~~~~~~~~--~d~-~~~fk~~~~~--g~~~i~l~  106 (109)
T 1row_A           46 APVFGFVDPSGSKDVVITRTAG------APKEDKLVVHFASAPADA--TDA-QAAFVAVAPA--GTVTIPMS  106 (109)
T ss_dssp             ECSEEEECTTEEEEEEEEECSC------CCEEEEEEEEEEECCTTC--SCH-HHHHTTCCCC--EEEEEEEE
T ss_pred             cCCceEECCCCeEEEEEEeCCC------CCCCCEEEEEEEECCCCC--CCH-HHHhhcCCCC--ceEEEEEE
Confidence            4999999999999999999994      258999999999999763  233 6788876543  34455543

>3efg_A Protein SLYX homolog; xanthomonas campestris PV. campestris, coiled-coil, structur genomics, PSI-2, protein structure initiative; 2.00A {Xanthomonas campestris PV}

Probab=85.23  E-value=2.7  Score=32.24  Aligned_cols=50  Identities=20%  Similarity=0.140  Sum_probs=42.9

Q ss_pred             HHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcc
Q 021780          223 ELKLKLNVMDSQLREAEHTIRKLMEARKLATREKDMLKHELEVLRRKSNL  272 (307)
Q Consensus       223 elk~kl~~~e~kl~Ea~~~I~kL~EEr~~aiqe~~kLqqEL~lLrr~~~~  272 (307)
                      ++..++..||.|+.-.+.+|..|.+.=-.--++.++|+.+|..|+.+-..
T Consensus        11 ~le~Ri~~LE~klAfqE~tIeeLn~~v~~Qq~~Id~L~~ql~~L~~rl~~   60 (78)
T 3efg_A           11 ELEARLVELETRLSFQEQALTELSEALADARLTGARNAELIRHLLEDLGK   60 (78)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC--
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            35567889999999999999999999988889999999999999987543

>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}

Probab=81.43  E-value=4.5  Score=33.94  Aligned_cols=33  Identities=15%  Similarity=0.242  Sum_probs=13.5

Q ss_pred             HhhhHHHHHHhhhhhhhhhHHHHHHHHHHHHHH
Q 021780          217 LAKDFEELKLKLNVMDSQLREAEHTIRKLMEAR  249 (307)
Q Consensus       217 ~~~d~~elk~kl~~~e~kl~Ea~~~I~kL~EEr  249 (307)
                      ++.|.-.++.+...++..+.+-..-|..|++|-
T Consensus        66 iadEl~k~~~~~~~L~~~l~~~~kE~~~lK~el   98 (138)
T 3hnw_A           66 IADDYFKAKKMADSLSLDIENKDKEIYDLKHEL   98 (138)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            334444444444444444444333333333333

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	307
d1wica_	152	b.1.11.2 (A:) MSP domain containing protein 2, Mos	1e-09
d1grwa_	124	b.1.11.2 (A:) Major sperm protein, MSP {Nematode (	4e-09

>d1wica_ b.1.11.2 (A:) MSP domain containing protein 2, Mospd2 {Mouse (Mus musculus) [TaxId: 10090]} Length = 152

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: PapD-like
family: MSP-like
domain: MSP domain containing protein 2, Mospd2
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 53.8 bits (129), Expect = 1e-09
 Identities = 10/65 (15%), Positives = 20/65 (30%), Gaps = 1/65 (1%)

Query: 18  FTMQAQRVAPPDLQCKDKFLIQGIVVPFGTSDEDITSDMFAKD-SGKYVEEKKLRVILMS 76
             +         +  +D+FLI    +   +         F K+     V E +LR   + 
Sbjct: 78  IDIIVSPHGGLTVSAQDRFLIMAAEMEQSSGTGPAELSQFWKEVPRNKVMEHRLRCHTVE 137

Query: 77  PPQSP 81
             +  
Sbjct: 138 SSKPN 142

>d1grwa_ b.1.11.2 (A:) Major sperm protein, MSP {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 124

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: PapD-like
family: MSP-like
domain: Major sperm protein, MSP
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 51.8 bits (124), Expect = 4e-09
 Identities = 9/59 (15%), Positives = 17/59 (28%), Gaps = 4/59 (6%)

Query: 14  CKTQFTMQAQRVAPPDLQCKDKFLIQGIVVPFGTSDEDITSDMFAKDSGKYVEEKKLRV 72
                +  A      +    D+  ++    P G   +    + F  D    V  K L +
Sbjct: 66  VLLAVSCDAFA-FGQEDTNNDRITVEWTNTPDGA-AKQFRREWFQGDG--MVRRKNLPI 120

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	307
d1wica_	152	MSP domain containing protein 2, Mospd2 {Mouse (Mu	99.56
d1grwa_	124	Major sperm protein, MSP {Nematode (Caenorhabditis	99.54
d1rowa_	107	SSP-19 {Nematode (Caenorhabditis elegans) [TaxId:	98.63
d1m1sa_	109	WR4 {Nematode (Caenorhabditis elegans) [TaxId: 623	98.57

>d1wica_ b.1.11.2 (A:) MSP domain containing protein 2, Mospd2 {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: PapD-like
family: MSP-like
domain: MSP domain containing protein 2, Mospd2
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.56  E-value=2.3e-15  Score=126.52  Aligned_cols=77  Identities=13%  Similarity=0.179  Sum_probs=63.6

Q ss_pred             CCccceecCCCeEEEEEEecCCCCCCCCCCcCceeEEEEEeeCCCCCCc--ccchhhhcccCCCcceeeeeEEEEeCCCC
Q 021780            2 LTGKNYISKEILCKTQFTMQAQRVAPPDLQCKDKFLIQGIVVPFGTSDE--DITSDMFAKDSGKYVEEKKLRVILMSPPQ   79 (307)
Q Consensus         2 ~PNsGVI~PgsT~~VsVtLQAqkeaPPDmqCKDKFLVQSvvVp~g~t~~--DIt~dmf~Ke~g~~V~E~KLRVVyv~P~~   79 (307)
                      -||.|+|.||++++|.|+||+.    ++++|||||+||++.++++.+..  |+ .++|+...+..++++||||+|+.++.
T Consensus        66 ~P~~G~i~p~~~~~I~v~~~~~----~~~~~kdKFli~~~~v~~~~~~~~~d~-~~~wk~~~~~~i~~~kLkv~~~~~~~  140 (152)
T d1wica_          66 KPSNSSCDPGASIDIIVSPHGG----LTVSAQDRFLIMAAEMEQSSGTGPAEL-SQFWKEVPRNKVMEHRLRCHTVESSK  140 (152)
T ss_dssp             ESSEEEECTTCEEEEEEEECSS----SCCCSSCCEEEEEEECCSSCCCSHHHH-HHHHHHSCTTTCEEEEECBCCCCSCS
T ss_pred             ECCceEECCCCEEEEEEEECCC----CcccCCCcEEEEEEEeCCCCCCCccCH-HHHhhcCCcCcEEEEEEEEEEeCCCC
Confidence            4999999999999999999864    45789999999999998765443  33 35666556788999999999999998


Q ss_pred             CCCc
Q 021780           80 SPVL   83 (307)
Q Consensus        80 pP~~   83 (307)
                      |+++
T Consensus       141 p~s~  144 (152)
T d1wica_         141 PNSL  144 (152)
T ss_dssp             SSSS
T ss_pred             CCCc
Confidence            7654

>d1grwa_ b.1.11.2 (A:) Major sperm protein, MSP {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: PapD-like
family: MSP-like
domain: Major sperm protein, MSP
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=99.54  E-value=6.3e-15  Score=120.24  Aligned_cols=71  Identities=11%  Similarity=0.083  Sum_probs=59.1

Q ss_pred             CCccceecCCCeEEEEEEecCCCCCCCCCCcCceeEEEEEeeCCCCCCcccchhhhcccCCCcceeeeeEEEEeC
Q 021780            2 LTGKNYISKEILCKTQFTMQAQRVAPPDLQCKDKFLIQGIVVPFGTSDEDITSDMFAKDSGKYVEEKKLRVILMS   76 (307)
Q Consensus         2 ~PNsGVI~PgsT~~VsVtLQAqkeaPPDmqCKDKFLVQSvvVp~g~t~~DIt~dmf~Ke~g~~V~E~KLRVVyv~   76 (307)
                      -||+|+|+||++++|.|+|||+. .+++.+||||||||++.+|++. .+++..++|. .. ..+.++||||.|.+
T Consensus        54 ~P~~G~i~p~~~~~i~V~~~~~~-~~~~~~~~dkF~v~~~~~p~~~-~~~~~~~w~~-~~-~~~~~~~l~V~Y~p  124 (124)
T d1grwa_          54 DPPCGVLDPKEAVLLAVSCDAFA-FGQEDTNNDRITVEWTNTPDGA-AKQFRREWFQ-GD-GMVRRKNLPIEYNP  124 (124)
T ss_dssp             ESSEEEECTTCEEEEEEEECCCC-GGGSCCTTCEEEEEEEECCSSC-CSSCCGGGGT-SS-SCCEEEEEEEEEEC
T ss_pred             ECCCCEECCCCEEEEEEEEecCC-CCCcccCCceEEEEEEECCCcc-HHHHHHHHhc-cC-CceEEEEEEEEeCC
Confidence            49999999999999999999985 4667799999999999999764 4667555444 33 47899999999974

>d1rowa_ b.1.11.2 (A:) SSP-19 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: PapD-like
family: MSP-like
domain: SSP-19
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=98.63  E-value=2.2e-08  Score=79.52  Aligned_cols=54  Identities=13%  Similarity=0.054  Sum_probs=43.4

Q ss_pred             CCccceecCCCeEEEEEEecCCCCCCCCCCcCceeEEEEEeeCCCCCCcccchhhhcccCCCc
Q 021780            2 LTGKNYISKEILCKTQFTMQAQRVAPPDLQCKDKFLIQGIVVPFGTSDEDITSDMFAKDSGKY   64 (307)
Q Consensus         2 ~PNsGVI~PgsT~~VsVtLQAqkeaPPDmqCKDKFLVQSvvVp~g~t~~DIt~dmf~Ke~g~~   64 (307)
                      -||.|+|+||++++|.|++|+..      +++|||+||++.++.+.  .|. .++|+......
T Consensus        44 ~P~~G~i~P~~~~~I~I~~~~~~------~~~DKf~I~~~~~~~~~--~d~-~~~fk~~~~~~   97 (107)
T d1rowa_          44 APVFGFVDPSGSKDVVITRTAGA------PKEDKLVVHFASAPADA--TDA-QAAFVAVAPAG   97 (107)
T ss_dssp             ECSEEEECTTEEEEEEEEECSCC------CEEEEEEEEEEECCTTC--SCH-HHHHTTCCCCE
T ss_pred             ECCEEEECCCCEEEEEEEeCCCC------CCCCEEEEEEEECCCCC--cCH-HHHhhcCCCCC
Confidence            49999999999999999999863      56999999999998764  343 67787654333

>d1m1sa_ b.1.11.2 (A:) WR4 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: PapD-like
family: MSP-like
domain: WR4
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=98.57  E-value=5e-08  Score=77.32  Aligned_cols=53  Identities=17%  Similarity=0.114  Sum_probs=43.0

Q ss_pred             CCccceecCCCeEEEEEEecCCCCCCCCCCcCceeEEEEEeeCCCCCCcccchhhhcccCCC
Q 021780            2 LTGKNYISKEILCKTQFTMQAQRVAPPDLQCKDKFLIQGIVVPFGTSDEDITSDMFAKDSGK   63 (307)
Q Consensus         2 ~PNsGVI~PgsT~~VsVtLQAqkeaPPDmqCKDKFLVQSvvVp~g~t~~DIt~dmf~Ke~g~   63 (307)
                      -||.|+|+||++++|+|++|+..      .++|||+||++.++++.  .|. .++|+.....
T Consensus        47 ~P~~G~I~P~~~~~i~I~~~~~~------~~~DKf~I~~~~~~~~~--~d~-~~~fk~~~~~   99 (109)
T d1m1sa_          47 RPVYGFVDAKGKSKLDINRLPGP------PKEDKIVIQYAEVPAEE--TDP-MAPFKAGAQQ   99 (109)
T ss_dssp             ECSEEEECTTCEEEEEEEECSCC------SCEEEEEEEEEEECTTC--CCT-THHHHTTCCC
T ss_pred             eCCeeEECCCCeEEEEEEeCCCC------CCCCEEEEEEEECCCCC--cCH-HHHHhcCCCC
Confidence            49999999999999999999863      36999999999999864  344 4578665433