Citrus Sinensis ID: 021784

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------
Protein Sequence
MTSCYSRLTAGSAASHSLLQSPKPSPKAPVSCYLRDHHANQRLPTTLLFRSSKRNYYHNNSNYKNNNVIYIVASAAAAERSDGHEAAVGDLVDKRKSGERTVEFNVISKSNDRRVEIVIAAAVTVLLGVGNRVLYKLALVPLKHYPFFLAQLATFGYVAVYFSILYLRYHAGIVTDEMLSMPKAPFVAVGLLEALAAATGMAAGAILSGASIPILSQTFLVWQILLSIIFLGRRYRVNQLFGCFLVGIGVIITVASGSNPGHSLKGAGIFWSLLMIVSFLLQAADTVLKEVIFLDAAQRLKVCLVEG
Secondary Structure (PSIPRED)
cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHcccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHccccHHHHHHHHHHHHHHHHHHHcccccccHHHHHcHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHEEEEEEcccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccEEEccc
Secondary Structure Prediction (SSPRO)
ccccccEEEccccccccccccccccccccEEEEEEEccccccccEEEEEEcccccccccccccHHHEEEEEEEcccccccccccccccccccccccccccccEEEcccccccccHHHHHHHHHHHHHHHHHHHHHHHHHccHHccHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHccccccHEHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHccccHHHHHEHEEEEEEEEEEEcccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcEEEEEcc
Coil and Loop (DISEMBL)
mtscysrltagsaashsllqspkpspkapvscylrdhhanqrlpttllfrsskrnyyhnnsnyknnNVIYIVASAAaaersdgheaavgdlvdkrksgertvEFNVISKSNDRRVEIVIAAAVTVLLGVGNRVLYKLALVPLKHYPFFLAQLATFGYVAVYFSILYLRYHAgivtdemlsmpkapFVAVGLLEALAAATGMAAGAilsgasipilSQTFLVWQILLSIIFLGRRYRVNQLFGCFLVGIGVIITVasgsnpghslkgaGIFWSLLMIVSFLLQAADTVLKEVIFLDAAQRLKVCLVEG
Flexible Loop (DISEMBL)
MTSCYSRltagsaashsllqspkpsPKAPVSCYLRDHHANQRLPTTLLFRSSKRNYYhnnsnyknnnVIYIVASAAAAERSDGHEAAVgdlvdkrksgertvefnvisksndrrvEIVIAAAVTVLLGVGNRVLYKLALVPLKHYPFFLAQLATFGYVAVYFSILYLRYHAGIVTDEMLSMPKAPFVAVGLLEALAAATGMAAGAILSGASIPILSQTFLVWQILLSIIFLGRRYRVNQLFGCFLVGIGVIITVASGSNPGHSLKGAGIFWSLLMIVSFLLQAADTVLKEVIFLDAAQRLKVCLVEG
Low Complexity Region (SEG)
MTSCYSRLTAGSAASHSLLQSPKPSPKAPVSCYLRDHHANQRLPTTLLFrsskrnyyhnnsnyknnnVIYIVASAAAAERSDGHEAAVGDLVDKRKSGERTVEFNVISKSNDRRVEIVIAAAVTVLLGVGNRVLYKLALVPLKHYPFFLAQLATFGYVAVYFSILYLRYHAGIVTDEMLSMPKAPFVavgllealaaatgmaagaILSGASIPILSQTFLVWQILLSIIFLGRRYRVNQLFGCFLVGIGVIITVASGSNPGHSLKGAGIFWSLLMIVSFLLQAADTVLKEVIFLDAAQRLKVCLVEG
Disordered region (IsUnstruct)
*******************************CYLRDHHANQRLPTTLLFRSSKRNYYHNNSNYKNNNVIYIVASAAA************************VEFNVISKSNDRRVEIVIAAAVTVLLGVGNRVLYKLALVPLKHYPFFLAQLATFGYVAVYFSILYLRYHAGIVTDEMLSMPKAPFVAVGLLEALAAATGMAAGAILSGASIPILSQTFLVWQILLSIIFLGRRYRVNQLFGCFLVGIGVIITVASGSNPGHSLKGAGIFWSLLMIVSFLLQAADTVLKEVIFLDAAQRLKVCLV**
Disordered Region (DISOPRED)
*********************************************************************************************************VISKSNDRRVEIVIAAAVTVLLGVGNRVLYKLALVPLKHYPFFLAQLATFGYVAVYFSILYLRYHAGIVTDEMLSMPKAPFVAVGLLEALAAATGMAAGAILSGASIPILSQTFLVWQILLSIIFLGRRYRVNQLFGCFLVGIGVIITVAS************IFWSLLMIVSFLLQAADTVLKEVIFLDAAQRLKVCLVEG
Disordered Region (DISEMBL)
****************************PVSCYLRDHHANQRLPTTLLFRSSKRNYYHNNSNYKNNNVIYIVASAA*********AAVGDLVDKRKSGERTVEFNVISKSNDRRVEIVIAAAVTVLLGVGNRVLYKLALVPLKHYPFFLAQLATFGYVAVYFSILYLRYHAGIVTDEMLSMPKAPFVAVGLLEALAAATGMAAGAILSGASIPILSQTFLVWQILLSIIFLGRRYRVNQLFGCFLVGIGVIITVASGSNPGHSLKGAGIFWSLLMIVSFLLQAADTVLKEVIFLDAAQRLKVCLVEG
Disordered Region (DISPRO)
*****SR****SAASHSLLQSPKPSPKAPVSCYLRDHHANQRLPTTLLFRSSKRN***NNSNYKNNNVIYIVASAA*************************VE*NVISKSNDRRVEIVIAAAVTVLLGVGNRVLYKLALVPLKHYPFFLAQLATFGYVAVYFSILYLRYHAGIVTDEMLSMPKAPFVAVGLLEALAAATGMAAGAILSGASIPILSQTFLVWQILLSIIFLGRRYRVNQLFGCFLVGIGVIITVASGSNP**SLKGAGIFWSLLMIVSFLLQAADTVLKEVIFLDAAQRLKVCLVEG
Transmembrane Helix (TMHMM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHoooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHoooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiHHHHHHHHHHHHHHHHHHHooooooooHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHooooooooooooooHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHooooooooooHHHHHHHHHHHHHHHHiiiiiiiiiiHHHHHHHHHHHHHHHHHHooooooooooooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHoooooooooooHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHoooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MTSCYSRLTAGSAASHSLLQSPKPSPKAPVSCYLRDHHANQRLPTTLLFRSSKRNYYHNNSNYKNNNVIYIVASAAAAERSDGHEAAVGDLVDKRKSGERTVEFNVISKSNDRRVEIVIAAAVTVLLGVGNRVLYKLALVPLKHYPFFLAQLATFGYVAVYFSILYLRYHAGIVTDEMLSMPKAPFVAVGLLEALAAATGMAAGAILSGASIPILSQTFLVWQILLSIIFLGRRYRVNQLFGCFLVGIGVIITVASGSNPGHSLKGAGIFWSLLMIVSFLLQAADTVLKEVIFLDAAQRLKVCLVEG
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	307	2.2.26 [Sep-21-2011]
Q55C66	478	Crt homolog 3 OS=Dictyost	yes	no	0.586	0.376	0.291	1e-12
Q550A6	484	Crt homolog 2 OS=Dictyost	no	no	0.602	0.382	0.284	3e-12
Q9GSB0	473	Crt homolog 1 OS=Dictyost	no	no	0.586	0.380	0.307	3e-12

>sp|Q55C66|CRTP3_DICDI Crt homolog 3 OS=Dictyostelium discoideum GN=crtp3 PE=3 SV=1

 Score = 73.9 bits (180), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 53/182 (29%), Positives = 95/182 (52%), Gaps = 2/182 (1%)

Query: 113 RRVEIVIAAAVTVLLGVGNRVLYKLALVPLKHYPFFLAQLATFGYVAVYF-SILYLRYHA 171
             + I+I   + ++ GV N VL K  ++   +Y FFL+Q+  +GY+ ++  ++ Y  Y  
Sbjct: 51  ETLPILIYVLLYIISGVINVVLLKKLMIKFVNYGFFLSQITNYGYLPIFLVAMWYKMYCT 110

Query: 172 GIVTDEMLSMPKAPFVAVGLLEALAAATGMAAGAILSGASIPILSQTFLVWQILLSIIFL 231
             V  E  + P+  FV +GLL+A+     +  G   SG    +L+Q  + + ++ S IFL
Sbjct: 111 SDVPKETRNFPQYKFVIMGLLDAINGFFVVIGGVSTSGPLQQLLNQAIIPFTMIASFIFL 170

Query: 232 GRRYRVNQLFGCFLVGIGVIITVASGSNPGHSLKGAGIFWSLLMIVSFLLQAADTVLKEV 291
             RY + QL G  ++  GVI+++   S  G S  G  +F++   ++S +  A   V K++
Sbjct: 171 RERYSLFQLGGAAVILGGVIVSLIP-SLVGGSSGGNILFYNFFYLISVIPGALSNVYKDI 229

Query: 292 IF 293
            F
Sbjct: 230 AF 231

May regulate endogenous transporter.
Dictyostelium discoideum (taxid: 44689)

>sp|Q550A6|CRTP2_DICDI Crt homolog 2 OS=Dictyostelium discoideum GN=crtp2 PE=3 SV=1

 Score = 73.2 bits (178), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 54/190 (28%), Positives = 97/190 (51%), Gaps = 5/190 (2%)

Query: 105 NVISKSNDRRVEIVIAAAVTVLLGVGNRVLYKLALVPLKHYPFFLAQLATFGYVAVYFSI 164
           N ISK   +   +++   + +L GV N +L K  +    +Y FFL QL  +GYV ++ +I
Sbjct: 51  NSISK---QTATVLVYVVLYILSGVINSLLLKKVMNVFTNYGFFLNQLTNYGYVPIFGAI 107

Query: 165 -LYLRYHAGIVTDEMLSMPKAPFVAVGLLEALAAATGMAAGAILSGASIPILSQTFLVWQ 223
            LY       +  +  S P+  FV +G L+A+     +  G   +G    +L+Q+ + + 
Sbjct: 108 VLYKILFTNDIPKDTRSFPQWKFVIMGALDAVTGYFVVIGGIKTTGPLQQLLNQSVIPFT 167

Query: 224 ILLSIIFLGRRYRVNQLFGCFLVGIGVIITVASGSNPGHSLKGAGIFWSLLMIVSFLLQA 283
           +LLS IFL  RY + QL G  ++  GV++++      G++  G  +F++   ++S +  A
Sbjct: 168 MLLSFIFLKERYSLIQLGGALIIIGGVVVSLIPSLTGGNT-SGNMLFYNFFYLISMIPYA 226

Query: 284 ADTVLKEVIF 293
              V K + F
Sbjct: 227 FSNVYKAIGF 236

May regulate endogenous transporter.

Dictyostelium discoideum (taxid: 44689)

>sp|Q9GSB0|CRTP1_DICDI Crt homolog 1 OS=Dictyostelium discoideum GN=crtp1 PE=2 SV=1

 Score = 72.8 bits (177), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 56/182 (30%), Positives = 87/182 (47%), Gaps = 2/182 (1%)

Query: 113 RRVEIVIAAAVTVLLGVGNRVLYKLALVPLKHYPFFLAQLATFGYVAVYFSIL-YLRYHA 171
             + I+I   + V  GV N VL K  +    +Y FFL+QL  FGYV ++ ++  Y  +  
Sbjct: 48  ETITILIYVVLYVTSGVINSVLLKKVMNKFTNYAFFLSQLTNFGYVPIFGAVTAYKIFFT 107

Query: 172 GIVTDEMLSMPKAPFVAVGLLEALAAATGMAAGAILSGASIPILSQTFLVWQILLSIIFL 231
             +  E    P   F  +G L+A+     +  G   SG    +L+Q  + + ++ S IFL
Sbjct: 108 KDIPQETRDFPTRKFAIMGALDAITGFFVVIGGVSTSGPLQQLLNQAIIPFTMIASFIFL 167

Query: 232 GRRYRVNQLFGCFLVGIGVIITVASGSNPGHSLKGAGIFWSLLMIVSFLLQAADTVLKEV 291
             RY + QL G  LV IG ++T    S  G S  G   FW+   ++S +  A   V K++
Sbjct: 168 KERYSLIQLGGA-LVIIGGVVTSLIPSLLGGSSGGNKPFWNFFYLLSVIPGALSNVYKDI 226

Query: 292 IF 293
            F
Sbjct: 227 GF 228

May regulate endogenous transporter.

Dictyostelium discoideum (taxid: 44689)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	307
449444865	459	PREDICTED: crt homolog 2-like [Cucumis s	0.951	0.636	0.606	2e-82
359479254	453	PREDICTED: crt homolog 1-like [Vitis vin	0.625	0.423	0.848	7e-79
224103963	451	predicted protein [Populus trichocarpa]	0.934	0.636	0.609	5e-77
296083866	344	unnamed protein product [Vitis vinifera]	0.609	0.543	0.855	2e-76
356519872	426	PREDICTED: crt homolog 1-like [Glycine m	0.628	0.453	0.808	2e-75
356553645	438	PREDICTED: crt homolog 1-like [Glycine m	0.726	0.509	0.718	6e-73
356577341	428	PREDICTED: crt homolog 1-like [Glycine m	0.739	0.530	0.730	2e-72
21553716	447	unknown [Arabidopsis thaliana]	0.918	0.630	0.550	6e-72
18419900	447	CRT (chloroquine-resistance transporter)	0.918	0.630	0.550	8e-72
357505093	432	hypothetical protein MTR_7g054190 [Medic	0.742	0.527	0.701	6e-71

>gi|449444865|ref|XP_004140194.1| PREDICTED: crt homolog 2-like [Cucumis sativus] gi|449480984|ref|XP_004156047.1| PREDICTED: crt homolog 2-like [Cucumis sativus]

 Score =  311 bits (797), Expect = 2e-82,   Method: Compositional matrix adjust.
 Identities = 188/310 (60%), Positives = 222/310 (71%), Gaps = 18/310 (5%)

Query: 1   MTSCYSRLTAGSAA---SHSLLQSPKPSPKAPVSCYLRDHHANQRLPTTLLFRSSKRNYY 57
           MTS   R +AG+A+      L Q P+  P+  VS Y  D   +      ++ R+ K    
Sbjct: 1   MTSWSHRFSAGTASFGGPFRLRQRPRSLPE--VSIYRNDDLRSGC--GCVILRAPK---- 52

Query: 58  HNNSNYKNNNVIYIVASAAAAERSDGHEAAVGDL----VDKRKSGE--RTVEFNVISKSN 111
           H        +  + ++ +   +R      AVGD     + + KSGE    +    + +S 
Sbjct: 53  HRRLEAVAPSGAWDLSDSGEEDRVKPCSYAVGDQRVEDLAEGKSGEILENIRAEKLRRS- 111

Query: 112 DRRVEIVIAAAVTVLLGVGNRVLYKLALVPLKHYPFFLAQLATFGYVAVYFSILYLRYHA 171
           DR+VEIV+AAA TV+ GV NRVLYKLALVPLKHYPFFLAQLATFGYV VYFSILYLRYHA
Sbjct: 112 DRKVEIVVAAASTVIFGVANRVLYKLALVPLKHYPFFLAQLATFGYVIVYFSILYLRYHA 171

Query: 172 GIVTDEMLSMPKAPFVAVGLLEALAAATGMAAGAILSGASIPILSQTFLVWQILLSIIFL 231
           GIVTDEMLS PKAP++  GLLEAL AATGMAA AILSGASIP+LSQTFLVWQILLS IFL
Sbjct: 172 GIVTDEMLSTPKAPYIVAGLLEALGAATGMAAAAILSGASIPVLSQTFLVWQILLSTIFL 231

Query: 232 GRRYRVNQLFGCFLVGIGVIITVASGSNPGHSLKGAGIFWSLLMIVSFLLQAADTVLKEV 291
           GRRY+ +QLFGCF V IGVIITVASGSN G+SLK AGIFWSLLMI+SFL QAADTVLKE+
Sbjct: 232 GRRYKTSQLFGCFFVTIGVIITVASGSNAGNSLKEAGIFWSLLMIISFLFQAADTVLKEI 291

Query: 292 IFLDAAQRLK 301
           IFLDA+++LK
Sbjct: 292 IFLDASRQLK 301

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359479254|ref|XP_002276436.2| PREDICTED: crt homolog 1-like [Vitis vinifera]

 Score =  300 bits (767), Expect = 7e-79,   Method: Compositional matrix adjust.
 Identities = 163/192 (84%), Positives = 176/192 (91%)

Query: 110 SNDRRVEIVIAAAVTVLLGVGNRVLYKLALVPLKHYPFFLAQLATFGYVAVYFSILYLRY 169
             DRR+++VIAAA TV+LGVGNRVLYKLALVPLKHYPFFLAQLAT GYV VYFSIL LRY
Sbjct: 105 EGDRRMKVVIAAAFTVVLGVGNRVLYKLALVPLKHYPFFLAQLATVGYVLVYFSILSLRY 164

Query: 170 HAGIVTDEMLSMPKAPFVAVGLLEALAAATGMAAGAILSGASIPILSQTFLVWQILLSII 229
           +AGIVTDEMLS+PK P+VAVGLLEAL AATGMAAGAILSGASIPILSQ+FLVWQ+LLS I
Sbjct: 165 NAGIVTDEMLSLPKTPYVAVGLLEALGAATGMAAGAILSGASIPILSQSFLVWQLLLSAI 224

Query: 230 FLGRRYRVNQLFGCFLVGIGVIITVASGSNPGHSLKGAGIFWSLLMIVSFLLQAADTVLK 289
           FLGRRY+VNQL GCFLV IGVIITVASGS+ G SLKGAGIFWSLLM+VSFL QAADTVLK
Sbjct: 225 FLGRRYKVNQLLGCFLVAIGVIITVASGSSAGASLKGAGIFWSLLMMVSFLFQAADTVLK 284

Query: 290 EVIFLDAAQRLK 301
           E IFL AA+RLK
Sbjct: 285 ERIFLKAAERLK 296

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224103963|ref|XP_002313263.1| predicted protein [Populus trichocarpa] gi|222849671|gb|EEE87218.1| predicted protein [Populus trichocarpa]

 Score =  293 bits (751), Expect = 5e-77,   Method: Compositional matrix adjust.
 Identities = 195/320 (60%), Positives = 226/320 (70%), Gaps = 33/320 (10%)

Query: 1   MTSCYSRLTAGSAASHSLLQSPKPSPKAPVSCYLRDHHANQRLPTTLLFRSSKRNYYHNN 60
           MTSC+ RLT G        QS + S    +S  L+    NQ+    +L RSS R Y  + 
Sbjct: 1   MTSCFRRLTTGPTPPSGPAQSRQRSTADILSLPLKRISINQQ--PGILLRSS-RQYSRS- 56

Query: 61  SNYKNNNVIYIVASAAAAERSDGHEAA---------VGDLV--DKRKSGERTVEFN---V 106
                    +I+ +    +RS G   A         VGD       +S +RTVE N    
Sbjct: 57  ---------FIIEAVEPGDRSGGGNEAEKAGPCACLVGDQTVGGVVESIDRTVEINGKRT 107

Query: 107 ISKSN-----DRRVEIVIAAAVTVLLGVGNRVLYKLALVPLKHYPFFLAQLATFGYVAVY 161
           IS S+     DR VE+ +AAAVTV+LGVGNRVLYKLAL+PLKHYPFFLAQLATFGYV VY
Sbjct: 108 ISGSDSRSKEDRAVEVAVAAAVTVVLGVGNRVLYKLALLPLKHYPFFLAQLATFGYVIVY 167

Query: 162 FSILYLRYHAGIVTDEMLSMPKAPFVAVGLLEALAAATGMAAGAILSGASIPILSQTFLV 221
           F+IL++R+ AGIVTDEMLSMPKAP++ VGLLEAL AATGMAAGAILSGASIPILSQTFLV
Sbjct: 168 FTILHIRHRAGIVTDEMLSMPKAPYILVGLLEALGAATGMAAGAILSGASIPILSQTFLV 227

Query: 222 WQILLSIIFLGRRYRVNQLFGCFLVGIGVIITVASGSNPGHSLKGAGIFWSLLMIVSFLL 281
           WQILLS IFLGRRY+VNQL GCFLV +GVIITVASG + G SL+ AGIFWSLLM+ SF L
Sbjct: 228 WQILLSTIFLGRRYKVNQLLGCFLVAVGVIITVASGPSAG-SLREAGIFWSLLMMFSFFL 286

Query: 282 QAADTVLKEVIFLDAAQRLK 301
           QAADTVLKEVIF DAA++LK
Sbjct: 287 QAADTVLKEVIFSDAAKQLK 306

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|296083866|emb|CBI24254.3| unnamed protein product [Vitis vinifera]

 Score =  291 bits (745), Expect = 2e-76,   Method: Compositional matrix adjust.
 Identities = 160/187 (85%), Positives = 173/187 (92%)

Query: 115 VEIVIAAAVTVLLGVGNRVLYKLALVPLKHYPFFLAQLATFGYVAVYFSILYLRYHAGIV 174
           +++VIAAA TV+LGVGNRVLYKLALVPLKHYPFFLAQLAT GYV VYFSIL LRY+AGIV
Sbjct: 1   MKVVIAAAFTVVLGVGNRVLYKLALVPLKHYPFFLAQLATVGYVLVYFSILSLRYNAGIV 60

Query: 175 TDEMLSMPKAPFVAVGLLEALAAATGMAAGAILSGASIPILSQTFLVWQILLSIIFLGRR 234
           TDEMLS+PK P+VAVGLLEAL AATGMAAGAILSGASIPILSQ+FLVWQ+LLS IFLGRR
Sbjct: 61  TDEMLSLPKTPYVAVGLLEALGAATGMAAGAILSGASIPILSQSFLVWQLLLSAIFLGRR 120

Query: 235 YRVNQLFGCFLVGIGVIITVASGSNPGHSLKGAGIFWSLLMIVSFLLQAADTVLKEVIFL 294
           Y+VNQL GCFLV IGVIITVASGS+ G SLKGAGIFWSLLM+VSFL QAADTVLKE IFL
Sbjct: 121 YKVNQLLGCFLVAIGVIITVASGSSAGASLKGAGIFWSLLMMVSFLFQAADTVLKERIFL 180

Query: 295 DAAQRLK 301
            AA+RLK
Sbjct: 181 KAAERLK 187

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356519872|ref|XP_003528593.1| PREDICTED: crt homolog 1-like [Glycine max]

 Score =  288 bits (738), Expect = 2e-75,   Method: Compositional matrix adjust.
 Identities = 156/193 (80%), Positives = 172/193 (89%)

Query: 109 KSNDRRVEIVIAAAVTVLLGVGNRVLYKLALVPLKHYPFFLAQLATFGYVAVYFSILYLR 168
           +S +R  E+++AAAVTV++G GNRVLYKLALVPL++YPFFLAQLATFGYV VYFSILY+R
Sbjct: 81  ESGNRLAEVMLAAAVTVVMGAGNRVLYKLALVPLRNYPFFLAQLATFGYVIVYFSILYIR 140

Query: 169 YHAGIVTDEMLSMPKAPFVAVGLLEALAAATGMAAGAILSGASIPILSQTFLVWQILLSI 228
           Y AGIVTDEMLS+PK PF+ VGLLEAL AATGMAAGA+LSGASIPILSQ FLVWQILLS 
Sbjct: 141 YRAGIVTDEMLSVPKTPFLVVGLLEALGAATGMAAGAMLSGASIPILSQAFLVWQILLSY 200

Query: 229 IFLGRRYRVNQLFGCFLVGIGVIITVASGSNPGHSLKGAGIFWSLLMIVSFLLQAADTVL 288
            FLGRRY+VNQL GC LV IGVI+TV SGS  GHSLK AGIFWSLLMIVSFL QAADTVL
Sbjct: 201 FFLGRRYKVNQLVGCSLVAIGVILTVVSGSGAGHSLKEAGIFWSLLMIVSFLFQAADTVL 260

Query: 289 KEVIFLDAAQRLK 301
           KEVIFLDA Q+LK
Sbjct: 261 KEVIFLDATQKLK 273

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356553645|ref|XP_003545164.1| PREDICTED: crt homolog 1-like [Glycine max]

 Score =  280 bits (716), Expect = 6e-73,   Method: Compositional matrix adjust.
 Identities = 163/227 (71%), Positives = 187/227 (82%), Gaps = 4/227 (1%)

Query: 78  AERSDGHEAAVGDL---VDKRKSGERTVEFNVISKSNDRRVEIVIAAAVTVLLGVGNRVL 134
           ++   G E  VG     V+ R+  E     + +  S +R VE+  AA  TV+LGVGNRVL
Sbjct: 55  SDDVGGREEKVGPCSYAVEDRRVAEDGGS-DAVVGSRNRVVEVAAAAVATVVLGVGNRVL 113

Query: 135 YKLALVPLKHYPFFLAQLATFGYVAVYFSILYLRYHAGIVTDEMLSMPKAPFVAVGLLEA 194
           YKLALVPLKHYPFFLAQLATFGYV VYF+ILY+R+HAGIVTDEML  PKAPF+ VGLLEA
Sbjct: 114 YKLALVPLKHYPFFLAQLATFGYVIVYFAILYIRHHAGIVTDEMLDAPKAPFIVVGLLEA 173

Query: 195 LAAATGMAAGAILSGASIPILSQTFLVWQILLSIIFLGRRYRVNQLFGCFLVGIGVIITV 254
           LAAATGMAAGAILSGASIPILSQTFLVWQILLSIIFLGRRY+VNQL GCFLV IGV++TV
Sbjct: 174 LAAATGMAAGAILSGASIPILSQTFLVWQILLSIIFLGRRYKVNQLLGCFLVTIGVVVTV 233

Query: 255 ASGSNPGHSLKGAGIFWSLLMIVSFLLQAADTVLKEVIFLDAAQRLK 301
           ASG+  G+ LK  G+FWSLLMIVSF LQAADTVLKE+IFLD++++LK
Sbjct: 234 ASGAGAGNLLKEGGMFWSLLMIVSFFLQAADTVLKEIIFLDSSRKLK 280

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356577341|ref|XP_003556785.1| PREDICTED: crt homolog 1-like [Glycine max]

 Score =  278 bits (712), Expect = 2e-72,   Method: Compositional matrix adjust.
 Identities = 168/230 (73%), Positives = 186/230 (80%), Gaps = 3/230 (1%)

Query: 72  VASAAAAERSDGHEAAVGDLVDKRKSGERTVEFNVISKSNDRRVEIVIAAAVTVLLGVGN 131
           V    A +RS   +AAV      R      +      +S +R  E+V+AAAVTV++G GN
Sbjct: 49  VKCGGAWKRSGEKKAAVAA---PRPCAVGRLAAESGRESGNRSAEVVLAAAVTVVMGAGN 105

Query: 132 RVLYKLALVPLKHYPFFLAQLATFGYVAVYFSILYLRYHAGIVTDEMLSMPKAPFVAVGL 191
           RVLYKLALVPLK+YPFFLAQLATFGYV VYFSILY+RY AGIVTDEMLS+PK PF+ VGL
Sbjct: 106 RVLYKLALVPLKNYPFFLAQLATFGYVIVYFSILYIRYRAGIVTDEMLSVPKTPFLVVGL 165

Query: 192 LEALAAATGMAAGAILSGASIPILSQTFLVWQILLSIIFLGRRYRVNQLFGCFLVGIGVI 251
           LEAL AATGMAAGA+LSGASIPILSQ FLVWQILLS IFLGRRY+VNQL GCFLV IGVI
Sbjct: 166 LEALGAATGMAAGAMLSGASIPILSQAFLVWQILLSYIFLGRRYKVNQLVGCFLVAIGVI 225

Query: 252 ITVASGSNPGHSLKGAGIFWSLLMIVSFLLQAADTVLKEVIFLDAAQRLK 301
           +TVASGS  GHSLK AGIFWSLLMIVSFL QAADTVLKEVIFLDA ++LK
Sbjct: 226 LTVASGSGAGHSLKEAGIFWSLLMIVSFLFQAADTVLKEVIFLDATRKLK 275

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|21553716|gb|AAM62809.1| unknown [Arabidopsis thaliana]

 Score =  276 bits (707), Expect = 6e-72,   Method: Compositional matrix adjust.
 Identities = 168/305 (55%), Positives = 204/305 (66%), Gaps = 23/305 (7%)

Query: 2   TSCYSRLTAGSAASHSLLQSPKPSPKAPVSCYLRDHHANQRLPTTLLFRSSKRNYYHNNS 61
           T+   RL AG  AS   ++S   +P   VS   R+   N   P  L  RSS+R+      
Sbjct: 3   TTSSDRLIAGLTASIGSIESRYANPAQSVSLICRNQ-INGAPPIVL--RSSRRSR----- 54

Query: 62  NYKNNNVIYIVASAAAAERSDGHEAAVGDLVDKRKSGERTVEF-----NVISKSNDRRVE 116
                  ++++ +   A+  +G     GD  D +KS  R         + ++  +DR +E
Sbjct: 55  -------LWLIEAIPPAKSWNGSND--GD-EDIKKSDTRNYAIGGTGGHAVAGKDDRTME 104

Query: 117 IVIAAAVTVLLGVGNRVLYKLALVPLKHYPFFLAQLATFGYVAVYFSILYLRYHAGIVTD 176
           IVIAAA T  LGVGNRVLYKLAL+PLK YPFFLAQL+TFGYVAVYFSILY RY AGIVT 
Sbjct: 105 IVIAAATTAALGVGNRVLYKLALIPLKQYPFFLAQLSTFGYVAVYFSILYFRYRAGIVTK 164

Query: 177 EMLSMPKAPFVAVGLLEALAAATGMAAGAILSGASIPILSQTFLVWQILLSIIFLGRRYR 236
           EMLS+PK PF+ VG+LE+LA A GMAA + LSG S  +LSQTFLVWQIL SIIFLGRRYR
Sbjct: 165 EMLSVPKLPFLIVGVLESLALAAGMAAASNLSGPSTTVLSQTFLVWQILFSIIFLGRRYR 224

Query: 237 VNQLFGCFLVGIGVIITVASGSNPGHSLKGAGIFWSLLMIVSFLLQAADTVLKEVIFLDA 296
           +NQ+ GC LV  GVI++VASGS   HS K  GI WSLLM+ SFLLQ ADTV+KEVIFLD+
Sbjct: 225 INQILGCTLVAFGVIVSVASGSGAAHSFKDTGILWSLLMVFSFLLQGADTVMKEVIFLDS 284

Query: 297 AQRLK 301
            +RLK
Sbjct: 285 KKRLK 289

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|18419900|ref|NP_568373.1| CRT (chloroquine-resistance transporter)-like transporter 1 [Arabidopsis thaliana] gi|115646756|gb|ABJ17107.1| At5g19380 [Arabidopsis thaliana] gi|332005310|gb|AED92693.1| CRT (chloroquine-resistance transporter)-like transporter 1 [Arabidopsis thaliana]

 Score =  276 bits (706), Expect = 8e-72,   Method: Compositional matrix adjust.
 Identities = 168/305 (55%), Positives = 204/305 (66%), Gaps = 23/305 (7%)

Query: 2   TSCYSRLTAGSAASHSLLQSPKPSPKAPVSCYLRDHHANQRLPTTLLFRSSKRNYYHNNS 61
           T+   RL AG  AS   ++S   +P   VS   R+   N   P  L  RSS+R+      
Sbjct: 3   TTSSDRLIAGLTASIGSIESRYANPAQSVSLICRNQ-INGAPPIVL--RSSRRSR----- 54

Query: 62  NYKNNNVIYIVASAAAAERSDGHEAAVGDLVDKRKSGERTVEF-----NVISKSNDRRVE 116
                  ++++ +   A+  +G     GD  D +KS  R         + ++  +DR +E
Sbjct: 55  -------LWLIEAIPPAKSWNGSND--GD-EDIKKSDTRNYAIGGTGGHAVAGKDDRTME 104

Query: 117 IVIAAAVTVLLGVGNRVLYKLALVPLKHYPFFLAQLATFGYVAVYFSILYLRYHAGIVTD 176
           IVIAAA T  LGVGNRVLYKLAL+PLK YPFFLAQL+TFGYVAVYFSILY RY AGIVT 
Sbjct: 105 IVIAAATTAALGVGNRVLYKLALIPLKQYPFFLAQLSTFGYVAVYFSILYFRYRAGIVTK 164

Query: 177 EMLSMPKAPFVAVGLLEALAAATGMAAGAILSGASIPILSQTFLVWQILLSIIFLGRRYR 236
           EMLS+PK PF+ VG+LE+LA A GMAA + LSG S  +LSQTFLVWQIL SIIFLGRRYR
Sbjct: 165 EMLSVPKLPFLIVGVLESLALAAGMAAASNLSGPSTTVLSQTFLVWQILFSIIFLGRRYR 224

Query: 237 VNQLFGCFLVGIGVIITVASGSNPGHSLKGAGIFWSLLMIVSFLLQAADTVLKEVIFLDA 296
           +NQ+ GC LV  GVI++VASGS   HS K  GI WSLLM+ SFLLQ ADTV+KEVIFLD+
Sbjct: 225 INQILGCTLVAFGVIVSVASGSGAAHSFKDTGILWSLLMVFSFLLQGADTVMKEVIFLDS 284

Query: 297 AQRLK 301
            +RLK
Sbjct: 285 KKRLK 289

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357505093|ref|XP_003622835.1| hypothetical protein MTR_7g054190 [Medicago truncatula] gi|355497850|gb|AES79053.1| hypothetical protein MTR_7g054190 [Medicago truncatula]

 Score =  273 bits (698), Expect = 6e-71,   Method: Compositional matrix adjust.
 Identities = 167/238 (70%), Positives = 189/238 (79%), Gaps = 10/238 (4%)

Query: 64  KNNNVIYIVASAAAAERSDGHEAAVGDLVDKRKSGERTVEFNVISKSNDRRVEIVIAAAV 123
           +    I +V ++ A ERSD  E       D++K   R VE N   KS ++ V++V+AAA 
Sbjct: 49  RRRTWIPVVEASGARERSDVSEE------DEKK---RIVEDNC-RKSENQTVKVVVAAAA 98

Query: 124 TVLLGVGNRVLYKLALVPLKHYPFFLAQLATFGYVAVYFSILYLRYHAGIVTDEMLSMPK 183
             + GVGNRVLYKLALVPLK YPFFLAQ +TF YV VYFSILY+RY AGIVTDEML++PK
Sbjct: 99  VGVFGVGNRVLYKLALVPLKQYPFFLAQFSTFVYVIVYFSILYIRYRAGIVTDEMLAVPK 158

Query: 184 APFVAVGLLEALAAATGMAAGAILSGASIPILSQTFLVWQILLSIIFLGRRYRVNQLFGC 243
            PF+ VGLLEAL AATGMAAGA+LSGASIPILSQTFLVWQILLS IFLGRRY+VNQL GC
Sbjct: 159 TPFLIVGLLEALGAATGMAAGAMLSGASIPILSQTFLVWQILLSTIFLGRRYKVNQLLGC 218

Query: 244 FLVGIGVIITVASGSNPGHSLKGAGIFWSLLMIVSFLLQAADTVLKEVIFLDAAQRLK 301
           FLV IGVIITVASGS  G SL+ AGIFWSLLM+VSFL QAADTVLKEVIF DA Q+LK
Sbjct: 219 FLVAIGVIITVASGSGAGKSLQEAGIFWSLLMMVSFLFQAADTVLKEVIFSDATQKLK 276

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	307
TAIR|locus:2150250	507	CLT1 "CRT (chloroquine-resista	0.472	0.285	0.641	8.8e-63
TAIR|locus:2177008	452	CLT3 "CRT (chloroquine-resista	0.947	0.643	0.478	2.7e-61
TAIR|locus:2136032	431	CLT2 "CRT (chloroquine-resista	0.651	0.464	0.460	1.5e-44
DICTYBASE|DDB_G0276943	473	crtp1 "chloroquine resistance	0.602	0.391	0.278	6.7e-11
DICTYBASE|DDB_G0270204	478	crtp3 "chloroquine resistance	0.605	0.389	0.264	1.2e-10
DICTYBASE|DDB_G0277321	484	crtp2 "chloroquine resistance	0.602	0.382	0.263	1.6e-10

TAIR|locus:2150250 CLT1 "CRT (chloroquine-resistance transporter)-like transporter 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 465 (168.7 bits), Expect = 8.8e-63, Sum P(2) = 8.8e-63
 Identities = 93/145 (64%), Positives = 104/145 (71%)

Query:   157 YVAVYFSILYLRYHAGIVTDEMLSMPKAPFVXXXXXXXXXXXXXXXXXXILSGASIPILS 216
             YVAVYFSILY RY AGIVT EMLS+PK PF+                   LSG S  +LS
Sbjct:   205 YVAVYFSILYFRYRAGIVTKEMLSVPKLPFLIVGVLESLALAAGMAAASNLSGPSTTVLS 264

Query:   217 QTFLVWQILLSIIFLGRRYRVNQLFGCFLVGIGVIITVASGSNPGHSLKGAGIFWSLLMI 276
             QTFLVWQIL SIIFLGRRYR+NQ+ GC LV  GVI++VASGS   HS K  GI WSLLM+
Sbjct:   265 QTFLVWQILFSIIFLGRRYRINQILGCTLVAFGVIVSVASGSGAAHSFKDTGILWSLLMV 324

Query:   277 VSFLLQAADTVLKEVIFLDAAQRLK 301
              SFLLQ ADTV+KEVIFLD+ +RLK
Sbjct:   325 FSFLLQGADTVMKEVIFLDSKKRLK 349

GO:0009507 "chloroplast" evidence=ISM

GO:0002229 "defense response to oomycetes" evidence=IGI

GO:0009536 "plastid" evidence=IDA

GO:0034635 "glutathione transport" evidence=IDA

GO:0046686 "response to cadmium ion" evidence=IMP

TAIR|locus:2177008 CLT3 "CRT (chloroquine-resistance transporter)-like transporter 3" [Arabidopsis thaliana (taxid:3702)]

 Score = 627 (225.8 bits), Expect = 2.7e-61, P = 2.7e-61
 Identities = 144/301 (47%), Positives = 182/301 (60%)

Query:     1 MTSCYSRLTAGSAASHSLLQSPKPSPKAPVSCYLRDHHANQRLPTTLLFXXXXXXXXXXX 60
             M +   R T G  AS + ++S   +    +S  +R +H + RLP  L+            
Sbjct:     1 MATTSRRFTTGLFASITSVKSHSANRPQSISL-IRRNHIDHRLP--LIVPSSRRWIIQAA 57

Query:    61 XXXXXXXVIYIVASAAAAERSDGHEAAVGDLVDKRKSGERTVEFNVISKSNDRRVEIVIA 120
                      +   + A  ++   +  A+GD  +   S   TV  +VI   + +  EIVI 
Sbjct:    58 RSWDG----FDDGAEAEIKKPGAYGYAIGDN-EIEGSSSSTV--HVIDGEHVKTAEIVIW 110

Query:   121 AAVTVLLGVGNRVLYKLALVPLKHYPFFLAQLATFGYVAVYFSILYLRYHAGIVTDEMLS 180
             AAVT   GVGNRV+YKLALVPLK YPFFLAQL+TFGYVAVY++ILY RY AG VTD MLS
Sbjct:   111 AAVTAAFGVGNRVMYKLALVPLKEYPFFLAQLSTFGYVAVYYTILYFRYRAGTVTDAMLS 170

Query:   181 MPKAPFVXXXXXXXXXXXXXXXXXXILSGASIPILSQTFLVWQILLSIIFLGRRYRVNQL 240
             +PK+PF+                   LSG S  +LSQTFLVWQI  SIIFLGRRY VNQ+
Sbjct:   171 VPKSPFLIVGILEALAAAAGMAAAANLSGPSTTVLSQTFLVWQIFFSIIFLGRRYSVNQI 230

Query:   241 FGCFLVGIGVIITVASGSNPGHSLKGAGIFWSLLMIVSFLLQAADTVLKEVIFLDAAQRL 300
              GC LV +GVI++VASGS   HSL  AG+ W LLM++SFLLQ A TVLKEVIF+D+ +RL
Sbjct:   231 LGCTLVALGVIVSVASGSGAAHSLNEAGVLWILLMVLSFLLQGAGTVLKEVIFIDSQRRL 290

Query:   301 K 301
             K
Sbjct:   291 K 291

GO:0009507 "chloroplast" evidence=ISM

GO:0002229 "defense response to oomycetes" evidence=IGI

GO:0009536 "plastid" evidence=IDA

GO:0034635 "glutathione transport" evidence=IDA

GO:0046686 "response to cadmium ion" evidence=IMP

TAIR|locus:2136032 CLT2 "CRT (chloroquine-resistance transporter)-like transporter 2" [Arabidopsis thaliana (taxid:3702)]

 Score = 469 (170.2 bits), Expect = 1.5e-44, P = 1.5e-44
 Identities = 94/204 (46%), Positives = 128/204 (62%)

Query:    98 GERTVEFNVISKSNDRRVEIVIAAAVTVLLGVGNRVLYKLALVPLKHYPFFLAQLATFGY 157
             G  T E ++ S  N     IV  + V V L V NRVLYKLALVP+K YPFF+AQL TFGY
Sbjct:    79 GASTEESSIPSNRN----LIVANSVVIVALAVANRVLYKLALVPMKQYPFFMAQLTTFGY 134

Query:   158 VAVYFSILYLRYHAGIVTDEMLSMPKAPFVXXXXXXXXXXXXXXXXXXILSGASIPILSQ 217
             V +YF+ILY R   GIVT+EM+ +PK  F                   +L G  IPIL+Q
Sbjct:   135 VLIYFTILYTRRRLGIVTNEMMDVPKWRFAIIGFLEALGVATGMAAAAMLPGPVIPILNQ 194

Query:   218 TFLVWQILLSIIFLGRRYRVNQLFGCFLVGIGVIITVASGSNPGHSLKGAGIFWSLLMIV 277
             T+LVWQ+L +++ LGRR+ +NQ+ GC LV +GV++ V+SGS    +L G G  W  +++ 
Sbjct:   195 TYLVWQLLFALLILGRRFLLNQIAGCLLVAVGVVVAVSSGSGADTTLSGIGFLWPAVLVA 254

Query:   278 SFLLQAADTVLKEVIFLDAAQRLK 301
             S   QA  +++KE +F DAA+RL+
Sbjct:   255 SAAFQAGASIIKEFVFNDAAKRLE 278

GO:0009507 "chloroplast" evidence=IDA

GO:0002229 "defense response to oomycetes" evidence=IGI

GO:0009536 "plastid" evidence=IDA

GO:0034635 "glutathione transport" evidence=IDA

GO:0046686 "response to cadmium ion" evidence=IMP

DICTYBASE|DDB_G0276943 crtp1 "chloroquine resistance transporter-like protein" [Dictyostelium discoideum (taxid:44689)]

 Score = 174 (66.3 bits), Expect = 6.7e-11, P = 6.7e-11
 Identities = 53/190 (27%), Positives = 83/190 (43%)

Query:   105 NVISKSNDRRVEIVIAAAVTVLLGVGNRVLYKLALVPLKHYPFFLAQLATFGYVAVYFSI 164
             N +SK     + I+I   + V  GV N VL K  +    +Y FFL+QL  FGYV ++ ++
Sbjct:    43 NSMSKET---ITILIYVVLYVTSGVINSVLLKKVMNKFTNYAFFLSQLTNFGYVPIFGAV 99

Query:   165 L-YLRYHAGIVTDEMLSMPKAPFVXXXXXXXXXXXXXXXXXXILSGASIPILSQTFLVWQ 223
               Y  +    +  E    P   F                     SG    +L+Q  + + 
Sbjct:   100 TAYKIFFTKDIPQETRDFPTRKFAIMGALDAITGFFVVIGGVSTSGPLQQLLNQAIIPFT 159

Query:   224 ILLSIIFLGRRYRVNQLFGCFLVGIGVIITVASGSNPGHSLKGAGIFWSLLMIVSFLLQA 283
             ++ S IFL  RY + QL G  ++ IG ++T    S  G S  G   FW+   ++S +  A
Sbjct:   160 MIASFIFLKERYSLIQLGGALVI-IGGVVTSLIPSLLGGSSGGNKPFWNFFYLLSVIPGA 218

Query:   284 ADTVLKEVIF 293
                V K++ F
Sbjct:   219 LSNVYKDIGF 228

GO:0012506 "vesicle membrane" evidence=IDA

GO:0003674 "molecular_function" evidence=ND

GO:0031410 "cytoplasmic vesicle" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0030659 "cytoplasmic vesicle membrane" evidence=IEA

GO:0044351 "macropinocytosis" evidence=RCA

DICTYBASE|DDB_G0270204 crtp3 "chloroquine resistance transporter-like protein" [Dictyostelium discoideum (taxid:44689)]

 Score = 172 (65.6 bits), Expect = 1.2e-10, P = 1.2e-10
 Identities = 50/189 (26%), Positives = 90/189 (47%)

Query:   107 ISKSNDRR-VEIVIAAAVTVLLGVGNRVLYKLALVPLKHYPFFLAQLATFGYVAVYF-SI 164
             + KS  +  + I+I   + ++ GV N VL K  ++   +Y FFL+Q+  +GY+ ++  ++
Sbjct:    44 LKKSMTKETLPILIYVLLYIISGVINVVLLKKLMIKFVNYGFFLSQITNYGYLPIFLVAM 103

Query:   165 LYLRYHAGIVTDEMLSMPKAPFVXXXXXXXXXXXXXXXXXXILSGASIPILSQTFLVWQI 224
              Y  Y    V  E  + P+  FV                    SG    +L+Q  + + +
Sbjct:   104 WYKMYCTSDVPKETRNFPQYKFVIMGLLDAINGFFVVIGGVSTSGPLQQLLNQAIIPFTM 163

Query:   225 LLSIIFLGRRYRVNQLFGCFLVGIGVIITVASGSNPGHSLKGAGIFWSLLMIVSFLLQAA 284
             + S IFL  RY + QL G  ++  GVI+++   S  G S  G  +F++   ++S +  A 
Sbjct:   164 IASFIFLRERYSLFQLGGAAVILGGVIVSLIP-SLVGGSSGGNILFYNFFYLISVIPGAL 222

Query:   285 DTVLKEVIF 293
               V K++ F
Sbjct:   223 SNVYKDIAF 231

GO:0008150 "biological_process" evidence=ND

GO:0003674 "molecular_function" evidence=ND

GO:0031410 "cytoplasmic vesicle" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0030659 "cytoplasmic vesicle membrane" evidence=IEA

GO:0044351 "macropinocytosis" evidence=RCA

DICTYBASE|DDB_G0277321 crtp2 "chloroquine resistance transporter-like protein" [Dictyostelium discoideum (taxid:44689)]

 Score = 171 (65.3 bits), Expect = 1.6e-10, P = 1.6e-10
 Identities = 50/190 (26%), Positives = 88/190 (46%)

Query:   105 NVISKSNDRRVEIVIAAAVTVLLGVGNRVLYKLALVPLKHYPFFLAQLATFGYVAVYFSI 164
             N ISK       +++   + +L GV N +L K  +    +Y FFL QL  +GYV ++ +I
Sbjct:    51 NSISKQT---ATVLVYVVLYILSGVINSLLLKKVMNVFTNYGFFLNQLTNYGYVPIFGAI 107

Query:   165 -LYLRYHAGIVTDEMLSMPKAPFVXXXXXXXXXXXXXXXXXXILSGASIPILSQTFLVWQ 223
              LY       +  +  S P+  FV                    +G    +L+Q+ + + 
Sbjct:   108 VLYKILFTNDIPKDTRSFPQWKFVIMGALDAVTGYFVVIGGIKTTGPLQQLLNQSVIPFT 167

Query:   224 ILLSIIFLGRRYRVNQLFGCFLVGIGVIITVASGSNPGHSLKGAGIFWSLLMIVSFLLQA 283
             +LLS IFL  RY + QL G  ++  GV++++      G++  G  +F++   ++S +  A
Sbjct:   168 MLLSFIFLKERYSLIQLGGALIIIGGVVVSLIPSLTGGNT-SGNMLFYNFFYLISMIPYA 226

Query:   284 ADTVLKEVIF 293
                V K + F
Sbjct:   227 FSNVYKAIGF 236


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.326   0.139   0.406    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      307       271   0.00098  114 3  11 22  0.40    33
                                                     32  0.40    37


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  6
  No. of states in DFA:  593 (63 KB)
  Total size of DFA:  174 KB (2101 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  18.87u 0.18s 19.05t   Elapsed:  00:00:01
  Total cpu time:  18.87u 0.18s 19.05t   Elapsed:  00:00:01
  Start:  Fri May 10 12:07:35 2013   End:  Fri May 10 12:07:36 2013

GO:0008150 "biological_process" evidence=ND

GO:0003674 "molecular_function" evidence=ND

GO:0031410 "cytoplasmic vesicle" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0030659 "cytoplasmic vesicle membrane" evidence=IEA

GO:0044351 "macropinocytosis" evidence=RCA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	307
pfam08627	130	pfam08627, CRT-like, CRT-like	2e-05

>gnl|CDD|117200 pfam08627, CRT-like, CRT-like

 Score = 43.0 bits (101), Expect = 2e-05
 Identities = 26/84 (30%), Positives = 42/84 (50%), Gaps = 4/84 (4%)

Query: 105 NVISKSNDRRVEIVIAAAVTVLLGVGNRVLYKLALVPLKHYPFFLAQLATFGYVAVYFSI 164
           N +SK     + I+I   + ++ GV N VL K  +    +Y FFL+QL  +GYV ++ + 
Sbjct: 49  NSMSKET---LTILIYVVLYIISGVINSVLLKKVMNKFTNYGFFLSQLTNYGYVPIFGAA 105

Query: 165 -LYLRYHAGIVTDEMLSMPKAPFV 187
             Y  Y    +  E  + P+  FV
Sbjct: 106 MWYKIYFTSDIPKETRNFPQYKFV 129

This region is found in proteins related to Plasmodium falciparum chloroquine resistance transporter (CRT). Length = 130

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	307
PF06027	334	DUF914: Eukaryotic protein of unknown function (DU	99.96
KOG2766	336	consensus Predicted membrane protein [Function unk	99.91
KOG3912	372	consensus Predicted integral membrane protein [Gen	99.82
PF08627	130	CRT-like: CRT-like; InterPro: IPR013936 This regio	99.79
PF08449	303	UAA: UAA transporter family; InterPro: IPR013657 T	99.63
PF04142	244	Nuc_sug_transp: Nucleotide-sugar transporter; Inte	99.55
PTZ00343	350	triose or hexose phosphate/phosphate translocator;	99.18
TIGR00817	302	tpt Tpt phosphate/phosphoenolpyruvate translocator	99.06
KOG2234	345	consensus Predicted UDP-galactose transporter [Car	98.89
PLN00411	358	nodulin MtN21 family protein; Provisional	98.64
KOG1581	327	consensus UDP-galactose transporter related protei	98.54
PF13536	113	EmrE: Multidrug resistance efflux transporter	98.5
COG0697	292	RhaT Permeases of the drug/metabolite transporter	98.41
KOG1583	330	consensus UDP-N-acetylglucosamine transporter [Car	98.38
KOG1441	316	consensus Glucose-6-phosphate/phosphate and phosph	98.36
TIGR00950	260	2A78 Carboxylate/Amino Acid/Amine Transporter.	98.3
PRK11453	299	O-acetylserine/cysteine export protein; Provisiona	98.19
PRK11689	295	aromatic amino acid exporter; Provisional	98.18
TIGR03340	281	phn_DUF6 phosphonate utilization associated putati	98.11
PF00892	126	EamA: EamA-like transporter family; InterPro: IPR0	98.06
PRK15430	296	putative chloramphenical resistance permease RarD;	98.03
TIGR00688	256	rarD rarD protein. This uncharacterized protein is	98.02
PRK11272	292	putative DMT superfamily transporter inner membran	98.0
KOG2765	416	consensus Predicted membrane protein [Function unk	97.83
KOG1582	367	consensus UDP-galactose transporter related protei	97.49
COG2510	140	Predicted membrane protein [Function unknown]	97.44
PRK10532	293	threonine and homoserine efflux system; Provisiona	97.25
KOG4510	346	consensus Permease of the drug/metabolite transpor	97.22
PF05653	300	Mg_trans_NIPA: Magnesium transporter NIPA; InterPr	97.22
TIGR00950	260	2A78 Carboxylate/Amino Acid/Amine Transporter.	97.15
TIGR00776	290	RhaT RhaT L-rhamnose-proton symporter family prote	97.15
PF03151	153	TPT: Triose-phosphate Transporter family; InterPro	96.99
KOG1443	349	consensus Predicted integral membrane protein [Fun	96.73
KOG1580	337	consensus UDP-galactose transporter related protei	96.69
PF08449	303	UAA: UAA transporter family; InterPro: IPR013657 T	96.67
TIGR00803	222	nst UDP-galactose transporter. NSTs generally appe	96.56
TIGR03340	281	phn_DUF6 phosphonate utilization associated putati	96.38
KOG1442	347	consensus GDP-fucose transporter [Carbohydrate tra	95.96
PRK15051	111	4-amino-4-deoxy-L-arabinose-phosphoundecaprenol fl	95.93
KOG2922	335	consensus Uncharacterized conserved protein [Funct	95.82
KOG1444	314	consensus Nucleotide-sugar transporter VRG4/SQV-7	95.81
PRK10532	293	threonine and homoserine efflux system; Provisiona	95.75
PRK11689	295	aromatic amino acid exporter; Provisional	95.6
PLN00411	358	nodulin MtN21 family protein; Provisional	95.27
COG0697	292	RhaT Permeases of the drug/metabolite transporter	95.18
TIGR00803	222	nst UDP-galactose transporter. NSTs generally appe	94.9
PTZ00343	350	triose or hexose phosphate/phosphate translocator;	94.67
PRK02971	129	4-amino-4-deoxy-L-arabinose-phosphoundecaprenol fl	94.33
KOG4314	290	consensus Predicted carbohydrate/phosphate translo	94.3
PRK15430	296	putative chloramphenical resistance permease RarD;	94.21
TIGR00776	290	RhaT RhaT L-rhamnose-proton symporter family prote	93.73
PF10639	113	UPF0546: Uncharacterised protein family UPF0546; I	93.59
PRK11272	292	putative DMT superfamily transporter inner membran	93.32
TIGR00817	302	tpt Tpt phosphate/phosphoenolpyruvate translocator	92.67
PRK10452	120	multidrug efflux system protein MdtJ; Provisional	92.4
PRK11453	299	O-acetylserine/cysteine export protein; Provisiona	91.62
PF06800	269	Sugar_transport: Sugar transport protein; InterPro	89.49
PF04142	244	Nuc_sug_transp: Nucleotide-sugar transporter; Inte	88.99
KOG4314	290	consensus Predicted carbohydrate/phosphate translo	87.89
PRK10650	109	multidrug efflux system protein MdtI; Provisional	87.48
PF06027	334	DUF914: Eukaryotic protein of unknown function (DU	87.13
PRK09541	110	emrE multidrug efflux protein; Reviewed	87.07
KOG2765	416	consensus Predicted membrane protein [Function unk	85.74
PF12398	42	DUF3660: Receptor serine/threonine kinase ; InterP	82.85
PF15169	187	DUF4564: Domain of unknown function (DUF4564)	82.48
PRK11431	105	multidrug efflux system protein; Provisional	80.95

>PF06027 DUF914: Eukaryotic protein of unknown function (DUF914); InterPro: IPR009262 This family consists of several hypothetical proteins of unknown function

Probab=99.96  E-value=7.2e-29  Score=239.19  Aligned_cols=169  Identities=25%  Similarity=0.259  Sum_probs=146.3

Q ss_pred             hhhhHHHHHHHhCCCCChhHHHHHHhhhhhHHHHHHHHHHHHhcCccchhhhcCCCccchHhhHHHHHHHHHHHhhhccc
Q 021784          128 GVGNRVLYKLALVPLKHYPFFLAQLATFGYVAVYFSILYLRYHAGIVTDEMLSMPKAPFVAVGLLEALAAATGMAAGAIL  207 (307)
Q Consensus       128 Gv~N~Vl~Kl~~~~~~nYp~Fl~q~~t~~yv~vyf~Il~~r~~~~~it~eml~~Pk~kfli~GllDal~~~L~viA~~yt  207 (307)
                      ..+|.....+... -.|.|.|++.++.+....+|.+++++|+..+... ++...|+|+|+++|++|+++|++.++|++||
T Consensus        26 ~~t~~~s~~l~~~-~~~~P~~Qs~~~Y~~l~~vy~~~~~~r~~~~~~~-~~~~~~~w~y~lla~~Dv~aN~~~v~a~~yT  103 (334)
T PF06027_consen   26 TGTGTFSSLLANK-GVNIPTFQSFFNYVLLALVYTPILLYRRGFKKWL-KVLKRPWWKYFLLALLDVEANYLVVLAYQYT  103 (334)
T ss_pred             HhHHHHHHHHHhc-CccCcHHHHHHHHHHHHHHHhhhhhhccccccch-hhcchhHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence            3445555555444 7799999998888888889998888886654433 4567889999999999999999999999999


Q ss_pred             cccHHHHhccchHHHHHHHHHHHhcccccccccchhhheeeceeeEeecCCCCCC--CCCCcchHHHHHHHHHhhHHHHH
Q 021784          208 SGASIPILSQTFLVWQILLSIIFLGRRYRVNQLFGCFLVGIGVIITVASGSNPGH--SLKGAGIFWSLLMIVSFLLQAAD  285 (307)
Q Consensus       208 sgs~~~LL~q~~IP~tmllS~ifLk~RY~~~qi~G~~IVl~Glivvv~sgs~~g~--s~~~~~vlw~lL~llS~ip~AlS  285 (307)
                      +.++.|+|+|+.|||+|++|++|||+||++.|++|+++|++|+++++.+|..+++  ..+++.++||+++++|+++||++
T Consensus       104 svtS~~lL~~~~i~~~~~LS~~fL~~ry~~~~~~gv~i~i~Gv~lv~~sD~~~~~~~~~~~~~i~GDll~l~~a~lya~~  183 (334)
T PF06027_consen  104 SVTSVQLLDCTSIPFVMILSFIFLKRRYSWFHILGVLICIAGVVLVVVSDVLSGSDSSSGSNPILGDLLALLGAILYAVS  183 (334)
T ss_pred             cHhHHHhhhhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHhhhhheeeecccccccCCCCCccchhHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999999999999999998754332  24688999999999999999999


Q ss_pred             HHHHHHhhhhhhh
Q 021784          286 TVLKEVIFLDAAQ  298 (307)
Q Consensus       286 nV~kE~~fkd~~~  298 (307)
                      ||+||+.+||+.+
T Consensus       184 nV~~E~~v~~~~~  196 (334)
T PF06027_consen  184 NVLEEKLVKKAPR  196 (334)
T ss_pred             HHHHHHhcccCCH
Confidence            9999999998764

Some of the sequences in this family are annotated as putative membrane proteins.

>KOG2766 consensus Predicted membrane protein [Function unknown]

Probab=99.91  E-value=5.3e-26  Score=212.24  Aligned_cols=169  Identities=20%  Similarity=0.174  Sum_probs=147.4

Q ss_pred             HHHhhhhhHHHHHHHhCCCCChhHHHHHHhhhhhHHHHHHHHHHHHhcCccchhhhcCCCccchHhhHHHHHHHHHHHhh
Q 021784          124 TVLLGVGNRVLYKLALVPLKHYPFFLAQLATFGYVAVYFSILYLRYHAGIVTDEMLSMPKAPFVAVGLLEALAAATGMAA  203 (307)
Q Consensus       124 ~Vi~Gv~N~Vl~Kl~~~~~~nYp~Fl~q~~t~~yv~vyf~Il~~r~~~~~it~eml~~Pk~kfli~GllDal~~~L~viA  203 (307)
                      +=++.++|....-.+..+--|-|-+++.+......++|.+++.+|..       .....|++|+++|+.|+++|++++.|
T Consensus        26 LSL~~t~~a~tss~la~k~iN~Pt~QtFl~Y~LLalVY~~~~~fR~~-------~~~~~~~hYilla~~DVEaNy~vV~A   98 (336)
T KOG2766|consen   26 LSLLITSTAFTSSELARKGINAPTSQTFLNYVLLALVYGPIMLFRRK-------YIKAKWRHYILLAFVDVEANYFVVKA   98 (336)
T ss_pred             HHHHHHcchhhhHHHHhccCCCccHHHHHHHHHHHHHHhhHHHhhhH-------HHHHHHHHhhheeEEeecccEEEeee
Confidence            33445666666667777778999998888888888999999988741       23345678999999999999999999


Q ss_pred             hccccccHHHHhccchHHHHHHHHHHHhcccccccccchhhheeeceeeEeecCCCCCC-CCCCcchHHHHHHHHHhhHH
Q 021784          204 GAILSGASIPILSQTFLVWQILLSIIFLGRRYRVNQLFGCFLVGIGVIITVASGSNPGH-SLKGAGIFWSLLMIVSFLLQ  282 (307)
Q Consensus       204 ~~ytsgs~~~LL~q~~IP~tmllS~ifLk~RY~~~qi~G~~IVl~Glivvv~sgs~~g~-s~~~~~vlw~lL~llS~ip~  282 (307)
                      ++||+.++.++|+||.||+.+++||+|||.||++.|+.|+++|++|++++++||-.+|+ +.++|++.||.++++|+.+|
T Consensus        99 yQyTsmtSi~lLDcwaip~v~~lsw~fLktrYrlmki~gV~iCi~GvvmvV~sDV~agd~aggsnp~~GD~lvi~GATlY  178 (336)
T KOG2766|consen   99 YQYTSMTSIMLLDCWAIPCVLVLSWFFLKTRYRLMKISGVVICIVGVVMVVFSDVHAGDRAGGSNPVKGDFLVIAGATLY  178 (336)
T ss_pred             hhhcchHHHHHHHHhhhHHHHHHHHHHHHHHHhhheeeeEEeEecceEEEEEeeeccccccCCCCCccCcEEEEecceee
Confidence            99999999999999999999999999999999999999999999999999999765544 35789999999999999999


Q ss_pred             HHHHHHHHHhhhhhhhh
Q 021784          283 AADTVLKEVIFLDAAQR  299 (307)
Q Consensus       283 AlSnV~kE~~fkd~~~~  299 (307)
                      |+|||.||++.|+..+.
T Consensus       179 aVSNv~EEflvkn~d~~  195 (336)
T KOG2766|consen  179 AVSNVSEEFLVKNADRV  195 (336)
T ss_pred             eeccccHHHHHhcCcHH
Confidence            99999999999987653

>KOG3912 consensus Predicted integral membrane protein [General function prediction only]

Probab=99.82  E-value=7.8e-20  Score=172.90  Aligned_cols=179  Identities=20%  Similarity=0.213  Sum_probs=143.6

Q ss_pred             HHHHHHHHhhhhhHHHHHHHhC------CCCChhHHHHHHhh---hhhHHHHHHHHHHHHhcCccc-----hhhh--cCC
Q 021784          119 IAAAVTVLLGVGNRVLYKLALV------PLKHYPFFLAQLAT---FGYVAVYFSILYLRYHAGIVT-----DEML--SMP  182 (307)
Q Consensus       119 i~~i~~Vi~Gv~N~Vl~Kl~~~------~~~nYp~Fl~q~~t---~~yv~vyf~Il~~r~~~~~it-----~eml--~~P  182 (307)
                      ++.+.||+.|+.|+++.|-+.+      |.+++|+.++..+.   |.|+.+|+.+-...-+.+...     ..+.  .|.
T Consensus         6 ~ls~imvvsGs~Ntl~aKwadsi~~eg~pgfqhpvlqal~mFlGEflCl~vf~lir~~sn~~g~~s~~~~ilsq~~~pf~   85 (372)
T KOG3912|consen    6 FLSLIMVVSGSFNTLVAKWADSIQAEGSPGFQHPVLQALLMFLGEFLCLAVFKLIRLRSNGQGVSSDLDSILSQDSSPFN   85 (372)
T ss_pred             hhhhhhhhhccHHHHHHHHHHhhhhhCCCccccHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCcccccccccccccCCCC
Confidence            4568899999999999999876      66799988888665   455555543321111222222     1122  344


Q ss_pred             CccchHhhHHHHHHHHHHHhhhccccccHHHHhccchHHHHHHHHHHHhcccccccccchhhheeeceeeEeecCCC---
Q 021784          183 KAPFVAVGLLEALAAATGMAAGAILSGASIPILSQTFLVWQILLSIIFLGRRYRVNQLFGCFLVGIGVIITVASGSN---  259 (307)
Q Consensus       183 k~kfli~GllDal~~~L~viA~~ytsgs~~~LL~q~~IP~tmllS~ifLk~RY~~~qi~G~~IVl~Glivvv~sgs~---  259 (307)
                      +.-|+.+++||++|+.++..|+.+|+.+++||++++.|.|+-++|..||+++.+..||+|.+.+..|+++++.++-.   
T Consensus        86 p~lfl~Pal~Di~gsslm~vgL~lTsASsfQMlRGaviIFvglfst~~Ln~ti~~~qWl~i~fv~lGlviVg~~d~~~~~  165 (372)
T KOG3912|consen   86 PVLFLPPALCDIAGSSLMYVGLNLTSASSFQMLRGAVIIFVGLFSTMFLNRTITGRQWLGILFVSLGLVIVGSLDVHLVT  165 (372)
T ss_pred             cceecChHHHHHhhhHHHHHHHHHhhHHHHHHhhcchhhhhHHHHHHHHhcccchhhHHHHHHHHhhhheeeeeeccccc
Confidence            45678899999999999999999999999999999999999999999999999999999999999999999988432   


Q ss_pred             CCCCCCCcchHHHHHHHHHhhHHHHHHHHHHHhhhhhh
Q 021784          260 PGHSLKGAGIFWSLLMIVSFLLQAADTVLKEVIFLDAA  297 (307)
Q Consensus       260 ~g~s~~~~~vlw~lL~llS~ip~AlSnV~kE~~fkd~~  297 (307)
                      ..-.+.++.+.|++++++++++-|+|.|+|||.+++++
T Consensus       166 ~p~~d~s~iitGdllIiiaqiivaiQ~v~Eek~l~~~n  203 (372)
T KOG3912|consen  166 DPYTDYSSIITGDLLIIIAQIIVAIQMVCEEKQLKKSN  203 (372)
T ss_pred             CCccccccchhhhHHHHHHHHHHHHHHHHHHhhhhhcc
Confidence            11123477899999999999999999999999998764

>PF08627 CRT-like: CRT-like; InterPro: IPR013936 This region is found in proteins related to Plasmodium falciparum chloroquine resistance transporter (CRT)

Probab=99.79  E-value=8.1e-20  Score=154.08  Aligned_cols=82  Identities=40%  Similarity=0.725  Sum_probs=77.0

Q ss_pred             cccccccchHHHHHHHHHHHhhhhhHHHHHHHhCCCCChhHHHHHHhhhhhHHHHHHHHHH-HHhcCccchhhhcCCCcc
Q 021784          107 ISKSNDRRVEIVIAAAVTVLLGVGNRVLYKLALVPLKHYPFFLAQLATFGYVAVYFSILYL-RYHAGIVTDEMLSMPKAP  185 (307)
Q Consensus       107 ~~~~~~~~~~v~i~~i~~Vi~Gv~N~Vl~Kl~~~~~~nYp~Fl~q~~t~~yv~vyf~Il~~-r~~~~~it~eml~~Pk~k  185 (307)
                      ..+-.+++++++++++++|+.|+.|+|++|+++++|.||+||++|+++++|+++||+++++ +|+.+.||+||++||+||
T Consensus        48 k~s~~ke~~~L~v~~vv~V~s~v~N~VL~K~~~~~m~NY~fFL~QlTt~gyvpIffaV~lyk~y~t~~It~Emr~FPkyK  127 (130)
T PF08627_consen   48 KQSYSKENFKLLVYVVVYVVSGVINRVLYKKMTNPMKNYPFFLNQLTTFGYVPIFFAVVLYKMYFTGDITKEMRAFPKYK  127 (130)
T ss_pred             HHhhhhcchHHHHHHHHHHHHHHHHHHHHHHHHhhcccchHHHHHhcccceehHHHHHHHHHHHHcCCCCHHHHhCcccc
Confidence            4456689999999999999999999999999999999999999999999999999999876 599999999999999999


Q ss_pred             chH
Q 021784          186 FVA  188 (307)
Q Consensus       186 fli  188 (307)
                      |++
T Consensus       128 FaI  130 (130)
T PF08627_consen  128 FAI  130 (130)
T ss_pred             ccC
Confidence            985

>PF08449 UAA: UAA transporter family; InterPro: IPR013657 This family includes transporters with a specificity for UDP-N-acetylglucosamine []

Probab=99.63  E-value=1.9e-15  Score=142.11  Aligned_cols=172  Identities=22%  Similarity=0.255  Sum_probs=134.7

Q ss_pred             HHHHhhhhhHHHHHHHhC-CCCC-hhHHHHHHhhhhhHHHHHHHHHHHHhcCccchhhhcCCCccchHhhHHHHHHHHHH
Q 021784          123 VTVLLGVGNRVLYKLALV-PLKH-YPFFLAQLATFGYVAVYFSILYLRYHAGIVTDEMLSMPKAPFVAVGLLEALAAATG  200 (307)
Q Consensus       123 ~~Vi~Gv~N~Vl~Kl~~~-~~~n-Yp~Fl~q~~t~~yv~vyf~Il~~r~~~~~it~eml~~Pk~kfli~GllDal~~~L~  200 (307)
                      +.......|-++...... +.++ ||.|++.++...+..+.+.......     .++....|.++|++++++++.+..+.
T Consensus         7 ~i~~~~~~~g~~qE~i~~~~~~~~~~~~lt~~q~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (303)
T PF08449_consen    7 GIFGGCCSYGILQEKIMTTPYGSPFPLFLTFVQFAFNALFSFILLSLFK-----FPKSRKIPLKKYAILSFLFFLASVLS   81 (303)
T ss_pred             HHHHHHHHHHHHHHHHHcCCCCCcccHHHHHHHHHHHHHHHHHHHHhcc-----ccCCCcChHHHHHHHHHHHHHHHHHH
Confidence            333334445555544444 4445 8999999887766655544332221     23346677789999999999999999


Q ss_pred             HhhhccccccHHHHhccchHHHHHHHHHHHhcccccccccchhhheeeceeeEeecCCCCCCC---CCCcchHHHHHHHH
Q 021784          201 MAAGAILSGASIPILSQTFLVWQILLSIIFLGRRYRVNQLFGCFLVGIGVIITVASGSNPGHS---LKGAGIFWSLLMIV  277 (307)
Q Consensus       201 viA~~ytsgs~~~LL~q~~IP~tmllS~ifLk~RY~~~qi~G~~IVl~Glivvv~sgs~~g~s---~~~~~vlw~lL~ll  277 (307)
                      ..|..|+|.+.+++++.+.++++|+++++++||||+..||++++++++|+++...++..+.+.   ...+...|.+++++
T Consensus        82 ~~al~~i~~p~~~~~ks~~~i~vmi~~~l~~~k~y~~~~~~~v~li~~Gv~~~~~~~~~~~~~~~~~~~~~~~G~~ll~~  161 (303)
T PF08449_consen   82 NAALKYISYPTQIVFKSSKPIPVMILGVLILGKRYSRRQYLSVLLITIGVAIFTLSDSSSSSSSNSSSFSSALGIILLLL  161 (303)
T ss_pred             HHHHHhCChHHHHHHhhhHHHHHHHHHHHhcCccccHHHHHHHHHHHhhHheeeecccccccccccccccchhHHHHHHH
Confidence            999999999999999999999999999999999999999999999999999999876433221   22233459999999


Q ss_pred             HhhHHHHHHHHHHHhhhhhhhh
Q 021784          278 SFLLQAADTVLKEVIFLDAAQR  299 (307)
Q Consensus       278 S~ip~AlSnV~kE~~fkd~~~~  299 (307)
                      |.+++|+.+++||++++++.+.
T Consensus       162 sl~~~a~~~~~qe~~~~~~~~~  183 (303)
T PF08449_consen  162 SLLLDAFTGVYQEKLFKKYGKS  183 (303)
T ss_pred             HHHHHHHHHHHHHHHHHHhCCc
Confidence            9999999999999999988654

; GO: 0055085 transmembrane transport

>PF04142 Nuc_sug_transp: Nucleotide-sugar transporter; InterPro: IPR007271 This family of membrane proteins transport nucleotide sugars from the cytoplasm into golgi vesicles

Probab=99.55  E-value=9.8e-15  Score=135.30  Aligned_cols=115  Identities=22%  Similarity=0.284  Sum_probs=102.6

Q ss_pred             ccchHhhHHHHHHHHHHHhhhccccccHHHHhccchHHHHHHHHHHHhcccccccccchhhheeeceeeEeecCCCCC--
Q 021784          184 APFVAVGLLEALAAATGMAAGAILSGASIPILSQTFLVWQILLSIIFLGRRYRVNQLFGCFLVGIGVIITVASGSNPG--  261 (307)
Q Consensus       184 ~kfli~GllDal~~~L~viA~~ytsgs~~~LL~q~~IP~tmllS~ifLk~RY~~~qi~G~~IVl~Glivvv~sgs~~g--  261 (307)
                      +++++|+++|++.|.+.+.|+.+++++.+|+++|+-|++|.++|+++||||.+..||++.++.++|++++...+....  
T Consensus        18 ~~~~vPA~lY~~qn~L~~~al~~ld~~t~qvl~q~kIl~TAl~s~~~L~r~ls~~qW~aL~lL~~Gv~lv~~~~~~~~~~   97 (244)
T PF04142_consen   18 LKLAVPALLYAIQNNLQFVALSYLDPSTFQVLSQSKILFTALFSVLLLKRRLSRRQWLALFLLVAGVVLVQLSSSQSSDN   97 (244)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHhhHHHHHHHHHHHHHHcccchhhHHHHHHHHHHHheeecCCcccccc
Confidence            689999999999999999999999999999999999999999999999999999999999999999999888643221  


Q ss_pred             ---CC-----CCCcchHHHHHHHHHhhHHHHHHHHHHHhhhhhhh
Q 021784          262 ---HS-----LKGAGIFWSLLMIVSFLLQAADTVLKEVIFLDAAQ  298 (307)
Q Consensus       262 ---~s-----~~~~~vlw~lL~llS~ip~AlSnV~kE~~fkd~~~  298 (307)
                         ..     ...+.+.|.+++++++++.|++.||+|+++|+...
T Consensus        98 ~~~~~~~~~~~~~~~~~G~~~vl~~~~~S~~agVy~E~~lK~~~~  142 (244)
T PF04142_consen   98 SSSSSVHHDASNQNPLLGLLAVLAAAFLSGFAGVYFEKLLKRSNV  142 (244)
T ss_pred             ccccccccccccchhHhHHHHHHHHHHHHHHHHHHHHHHhcccch
Confidence               00     13456788999999999999999999999998753

P78382 from SWISSPROT transports CMP-sialic acid, P78381 from SWISSPROT transports UDP-galactose and Q9Y2D2 from SWISSPROT transports UDP-GlcNAc. This family has some but not complete overlap with the UDP-galactose transporter family IPR004689 from INTERPRO.; GO: 0005351 sugar:hydrogen symporter activity, 0008643 carbohydrate transport, 0000139 Golgi membrane, 0016021 integral to membrane

>PTZ00343 triose or hexose phosphate/phosphate translocator; Provisional

Probab=99.18  E-value=3.4e-10  Score=109.38  Aligned_cols=177  Identities=14%  Similarity=0.081  Sum_probs=135.4

Q ss_pred             cccchHHHHHHHHHHHhhhhhHHHHHHHhCCCCChhHHHHHHhhhhhHHHHHHHHHHHHhc-CccchhhhcCCCccchHh
Q 021784          111 NDRRVEIVIAAAVTVLLGVGNRVLYKLALVPLKHYPFFLAQLATFGYVAVYFSILYLRYHA-GIVTDEMLSMPKAPFVAV  189 (307)
Q Consensus       111 ~~~~~~v~i~~i~~Vi~Gv~N~Vl~Kl~~~~~~nYp~Fl~q~~t~~yv~vyf~Il~~r~~~-~~it~eml~~Pk~kfli~  189 (307)
                      ...++++.+++++.-.+...-.+..|..++. .+||++++.++...-.++.......+++. .++.  .....+++.+.+
T Consensus        44 ~~~~~~~~~~~~~wy~~s~~~~~~nK~vl~~-~~~P~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~--~~~~~~~~llp~  120 (350)
T PTZ00343         44 PNFKWKLALLFLTWYALNVLYVVDNKLALNM-LPLPWTISSLQLFVGWLFALLYWATGFRKIPRIK--SLKLFLKNFLPQ  120 (350)
T ss_pred             CcccHHHHHHHHHHHHHHHHHHHHHHHHHHh-CChhHHHHHHHHHHHHHHHHHHHHhCCCCCCCCC--CHHHHHHHHHHH
Confidence            3568999999988888888889999998887 47999999987533222111111111111 0110  011123467889


Q ss_pred             hHHHHHHHHHHHhhhccccccHHHHhccchHHHHHHHHHHHhcccccccccchhhheeeceeeEeecCCCCCCCCCCcch
Q 021784          190 GLLEALAAATGMAAGAILSGASIPILSQTFLVWQILLSIIFLGRRYRVNQLFGCFLVGIGVIITVASGSNPGHSLKGAGI  269 (307)
Q Consensus       190 GllDal~~~L~viA~~ytsgs~~~LL~q~~IP~tmllS~ifLk~RY~~~qi~G~~IVl~Glivvv~sgs~~g~s~~~~~v  269 (307)
                      |+|-.......++|..+++.+..+++.....+++++++++++|+|+++.+++|++++++|++++...+       .+..+
T Consensus       121 gl~~~~~~~~~~~sl~~~svs~~~iika~~Pvft~lls~~~l~ek~s~~~~l~l~l~v~Gv~l~~~~~-------~~~~~  193 (350)
T PTZ00343        121 GLCHLFVHFGAVISMGLGAVSFTHVVKAAEPVFTALLSILFLKQFLNLYAYLSLIPIVGGVALASVKE-------LHFTW  193 (350)
T ss_pred             HHHHHHHHHHHHHHHhhccHHHHHHHHHhhHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHheeccc-------chhHH
Confidence            99998888888899999999999999999999999999999999999999999999999999976421       12247


Q ss_pred             HHHHHHHHHhhHHHHHHHHHHHhhhhhh
Q 021784          270 FWSLLMIVSFLLQAADTVLKEVIFLDAA  297 (307)
Q Consensus       270 lw~lL~llS~ip~AlSnV~kE~~fkd~~  297 (307)
                      .|.++.++|.+..|+.+++-++..++..
T Consensus       194 ~G~~~~l~s~~~~a~~~i~~k~~~~~~~  221 (350)
T PTZ00343        194 LAFWCAMLSNLGSSLRSIFAKKTMKNKS  221 (350)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence            7999999999999999999999876543

>TIGR00817 tpt Tpt phosphate/phosphoenolpyruvate translocator

Probab=99.06  E-value=1.5e-09  Score=101.49  Aligned_cols=168  Identities=11%  Similarity=0.068  Sum_probs=125.5

Q ss_pred             HHHHHHHHHHHhhhhhHHHHHHHhCCCCChhHHHHHHhhhhhHHHHHHHHHHHHhcCccchhhhcCCCccchHhhHHHHH
Q 021784          116 EIVIAAAVTVLLGVGNRVLYKLALVPLKHYPFFLAQLATFGYVAVYFSILYLRYHAGIVTDEMLSMPKAPFVAVGLLEAL  195 (307)
Q Consensus       116 ~v~i~~i~~Vi~Gv~N~Vl~Kl~~~~~~nYp~Fl~q~~t~~yv~vyf~Il~~r~~~~~it~eml~~Pk~kfli~GllDal  195 (307)
                      +...+++..-.+...-+++.|...+. .+||.+++.++...-.++...  .++....+. ++.....+++++.+|++-+.
T Consensus         2 ~~~~~~~~w~~~~~~~~~~NK~~l~~-~~~P~~~~~~~~~~~~~~~~~--~~~~~~~~~-~~~~~~~~~~~~~~g~~~~~   77 (302)
T TIGR00817         2 QTGLLFGLWYFLNVYFNIYNKKLLNV-FPYPYFKTLISLAVGSLYCLL--SWSSGLPKR-LKISSALLKLLLPVAIVHTI   77 (302)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhh-CChhHHHHHHHHHHHHHHHHH--HHHhCCCCC-CCCCHHHHHHHHHHHHHHHH
Confidence            44566777777888888999998874 699999888764322211111  121111000 00011123457889999999


Q ss_pred             HHHHHHhhhccccccHHHHhccchHHHHHHHHHHHhcccccccccchhhheeeceeeEeecCCCCCCCCCCcchHHHHHH
Q 021784          196 AAATGMAAGAILSGASIPILSQTFLVWQILLSIIFLGRRYRVNQLFGCFLVGIGVIITVASGSNPGHSLKGAGIFWSLLM  275 (307)
Q Consensus       196 ~~~L~viA~~ytsgs~~~LL~q~~IP~tmllS~ifLk~RY~~~qi~G~~IVl~Glivvv~sgs~~g~s~~~~~vlw~lL~  275 (307)
                      ...+.+.|..|++.+..+++.....+++++++++++|+|++..+++|++++++|+++...  .+     .+....|+++.
T Consensus        78 ~~~~~~~~l~~~s~s~~~li~~~~Pv~~~ll~~~~~~e~~~~~~~~~l~l~~~Gv~l~~~--~~-----~~~~~~G~~~~  150 (302)
T TIGR00817        78 GHVTSNVSLSKVAVSFTHTIKAMEPFFSVVLSAFFLGQEFPSTLWLSLLPIVGGVALASD--TE-----LSFNWAGFLSA  150 (302)
T ss_pred             HHHHHHHHHHhccHHHHHHHHhcchHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHhhhcC--Cc-----ccccHHHHHHH
Confidence            999999999999999999999999999999999999999999999999999999976431  11     13346799999


Q ss_pred             HHHhhHHHHHHHHHHHhhh
Q 021784          276 IVSFLLQAADTVLKEVIFL  294 (307)
Q Consensus       276 llS~ip~AlSnV~kE~~fk  294 (307)
                      ++|.+..|+.+++.++..+
T Consensus       151 l~a~~~~a~~~v~~k~~~~  169 (302)
T TIGR00817       151 MISNITFVSRNIFSKKAMT  169 (302)
T ss_pred             HHHHHHHHHHHHHHHHhhc
Confidence            9999999999999887655

specificities overlap.

>KOG2234 consensus Predicted UDP-galactose transporter [Carbohydrate transport and metabolism]

Probab=98.89  E-value=1.6e-08  Score=98.55  Aligned_cols=114  Identities=18%  Similarity=0.146  Sum_probs=102.4

Q ss_pred             ccchHhhHHHHHHHHHHHhhhccccccHHHHhccchHHHHHHHHHHHhcccccccccchhhheeeceeeEeec---CCCC
Q 021784          184 APFVAVGLLEALAAATGMAAGAILSGASIPILSQTFLVWQILLSIIFLGRRYRVNQLFGCFLVGIGVIITVAS---GSNP  260 (307)
Q Consensus       184 ~kfli~GllDal~~~L~viA~~ytsgs~~~LL~q~~IP~tmllS~ifLk~RY~~~qi~G~~IVl~Glivvv~s---gs~~  260 (307)
                      .|..+++++-++.|.+.++++.|.++..+|+..|.-|..|.+++.++|+||.+..||...++-++|+.++-.+   +.++
T Consensus        93 lk~~vPa~iYalqNnl~yval~~ldaatyqVt~qlKI~tTA~f~vl~L~rkLs~~Qw~Al~lL~~Gv~~vQ~~~~~~~~a  172 (345)
T KOG2234|consen   93 LKVSVPALIYALQNNLQYVALSNLDAATYQVTYQLKILTTAIFSVLILRRKLSRLQWMALVLLFAGVALVQLPSLSPTGA  172 (345)
T ss_pred             HHHHHHHHHHHHhhhHHHHHHhcCCchhhhhhhhHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHhccCCCCCCc
Confidence            5899999999999999999999999999999999999999999999999999999999999999999988844   2222


Q ss_pred             C-CCCCCcchHHHHHHHHHhhHHHHHHHHHHHhhhhhh
Q 021784          261 G-HSLKGAGIFWSLLMIVSFLLQAADTVLKEVIFLDAA  297 (307)
Q Consensus       261 g-~s~~~~~vlw~lL~llS~ip~AlSnV~kE~~fkd~~  297 (307)
                      . .....|.+.|-...+.+|...+++.||=|+++|+.+
T Consensus       173 ~~~~~~~n~~~G~~avl~~c~~SgfAgvYfEkiLK~s~  210 (345)
T KOG2234|consen  173 KSESSAQNPFLGLVAVLVACFLSGFAGVYFEKILKGSN  210 (345)
T ss_pred             cCCCcccchhhhHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence            1 234578899999999999999999999999998754

>PLN00411 nodulin MtN21 family protein; Provisional

Probab=98.64  E-value=2.1e-07  Score=90.93  Aligned_cols=182  Identities=18%  Similarity=0.207  Sum_probs=120.8

Q ss_pred             ccchHHHHHHHHHHHhhhhhHHHHHHHhCC-CCChhHHHHHHhhhhhHHHHHHHHHHHHhcCccchhhhcCCCccchHhh
Q 021784          112 DRRVEIVIAAAVTVLLGVGNRVLYKLALVP-LKHYPFFLAQLATFGYVAVYFSILYLRYHAGIVTDEMLSMPKAPFVAVG  190 (307)
Q Consensus       112 ~~~~~v~i~~i~~Vi~Gv~N~Vl~Kl~~~~-~~nYp~Fl~q~~t~~yv~vyf~Il~~r~~~~~it~eml~~Pk~kfli~G  190 (307)
                      +|..+..+.++++=+.-....++.|...+. +..++ + .-+-...=.++.+++.+.+.+....++... -.+.+++++|
T Consensus         9 ~~~~~~~~~~~~~q~~~~~~~~~~k~a~~~G~~~~~-~-~~~R~~iA~l~Ll~~~~~~~~~~~~~~~~~-~~~~~l~l~g   85 (358)
T PLN00411          9 RREAVFLTAMLATETSVVGISTLFKVATSKGLNIYP-F-LGYSYLLASLLLLPSLFFTNRSRSLPPLSV-SILSKIGLLG   85 (358)
T ss_pred             hhccchHHHHHHHHHHHHHHHHHHHHHHHCCCCccH-H-HHHHHHHHHHHHHHHHHHHHHhcccCcchH-HHHHHHHHHH
Confidence            345666677777777777788888888864 33444 2 211111101112222233221111111000 0113567788


Q ss_pred             HHHHHHHHHHHhhhccccccHHHHhccchHHHHHHHHHHH------hcccccccccchhhheeeceeeEeecCCCC----
Q 021784          191 LLEALAAATGMAAGAILSGASIPILSQTFLVWQILLSIIF------LGRRYRVNQLFGCFLVGIGVIITVASGSNP----  260 (307)
Q Consensus       191 llDal~~~L~viA~~ytsgs~~~LL~q~~IP~tmllS~if------Lk~RY~~~qi~G~~IVl~Glivvv~sgs~~----  260 (307)
                      ++-...+.+.+.|.+||+.....++......|+++++++|      +|+|.+..|++|.+++++|+.++...+...    
T Consensus        86 ~~g~~~~~~~~~gl~~tsa~~asll~~~~P~~~~lla~~~~~e~~~~~er~~~~~~~G~~l~~~Gv~ll~~~~g~~~~~~  165 (358)
T PLN00411         86 FLGSMYVITGYIGIEYSNPTLASAISNITPALTFILAIIFRMEKVSFKERSSVAKVMGTILSLIGALVVIFYHGPRVFVA  165 (358)
T ss_pred             HHHHHHHHHHHHHHhhccHHHHHHHHHhhHHHHHHHHHHHHhchhhhcccccHHHHHHHHHHHHHHHHHHHccCcccccc
Confidence            8776666788999999999999999999999999999999      699999999999999999998766432100    


Q ss_pred             --------------CCCCCCcchHHHHHHHHHhhHHHHHHHHHHHhhhhh
Q 021784          261 --------------GHSLKGAGIFWSLLMIVSFLLQAADTVLKEVIFLDA  296 (307)
Q Consensus       261 --------------g~s~~~~~vlw~lL~llS~ip~AlSnV~kE~~fkd~  296 (307)
                                    .....++.++++++.++|++..|+.+++..+..+++
T Consensus       166 ~~~~~~~~~~~~~~~~~~~~~~~lG~~l~l~aa~~wa~~~il~~~~~~~~  215 (358)
T PLN00411        166 SSPPYLNFRQLSPPLSSSNSDWLIGGALLTIQGIFVSVSFILQAHIMSEY  215 (358)
T ss_pred             cccccccccccccccCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence                          001112236689999999999999999998876665

>KOG1581 consensus UDP-galactose transporter related protein [Carbohydrate transport and metabolism]

Probab=98.54  E-value=1.3e-06  Score=84.16  Aligned_cols=182  Identities=16%  Similarity=0.184  Sum_probs=135.1

Q ss_pred             cccchHHHHHHHHHHHhhhhhHHHH-HHHhCCC------CChhHHHHHHhhhhhHHHHHHHHHHHHhcCccchhhhcCCC
Q 021784          111 NDRRVEIVIAAAVTVLLGVGNRVLY-KLALVPL------KHYPFFLAQLATFGYVAVYFSILYLRYHAGIVTDEMLSMPK  183 (307)
Q Consensus       111 ~~~~~~v~i~~i~~Vi~Gv~N~Vl~-Kl~~~~~------~nYp~Fl~q~~t~~yv~vyf~Il~~r~~~~~it~eml~~Pk  183 (307)
                      .++.+.+.+++.+.-.+=+.=-|++ |++..+-      ++.|-|+...+.++.+++-...  .+.....   -+-.-|+
T Consensus         9 ~~~~~~L~~c~~GI~~t~l~~gVlQEki~T~~y~~~~~rF~~~~fL~~~q~l~~~~~s~~~--l~~~k~~---~~~~apl   83 (327)
T KOG1581|consen    9 ANKIILLVFCFSGIYATFLTWGVLQEKIMTRPYGEDGERFEHSLFLVFCQRLVALLVSYAM--LKWWKKE---LSGVAPL   83 (327)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhcceeecccCcccccccccHHHHHHHHHHHHHHHHHH--Hhccccc---CCCCCch
Confidence            3455555555444333222222222 4554443      2677888888887777665333  2222211   1334578


Q ss_pred             ccchHhhHHHHHHHHHHHhhhccccccHHHHhccchHHHHHHHHHHHhcccccccccchhhheeeceeeEeecC-CC-CC
Q 021784          184 APFVAVGLLEALAAATGMAAGAILSGASIPILSQTFLVWQILLSIIFLGRRYRVNQLFGCFLVGIGVIITVASG-SN-PG  261 (307)
Q Consensus       184 ~kfli~GllDal~~~L~viA~~ytsgs~~~LL~q~~IP~tmllS~ifLk~RY~~~qi~G~~IVl~Glivvv~sg-s~-~g  261 (307)
                      |+|..+++...++..++.-|+.|++=+.|.+--.+-+.-+|++=.++-|+||+..+|+.+++|.+|+.+-...+ ++ .+
T Consensus        84 ~~y~~is~tn~~s~~~~yeaLKyvSyPtq~LaKscKmIPVmlmg~Lvy~~ky~~~eYl~~~LIs~GvsiF~l~~~s~s~~  163 (327)
T KOG1581|consen   84 YKYSLISFTNTLSSWCGYEALKYVSYPTQTLAKSCKMIPVMLMGTLVYGRKYSSFEYLVAFLISLGVSIFSLFPNSDSSS  163 (327)
T ss_pred             hHHhHHHHHhhcchHHHHHHHHhccchHHHHHHHhhhhHHHHHHHHHhcCccCcHHHHHHHHHHhheeeEEEecCCCCcc
Confidence            99999999999999999999999999999999999888899999999999999999999999999997766543 22 23


Q ss_pred             CCCCCcchHHHHHHHHHhhHHHHHHHHHHHhhhhhh
Q 021784          262 HSLKGAGIFWSLLMIVSFLLQAADTVLKEVIFLDAA  297 (307)
Q Consensus       262 ~s~~~~~vlw~lL~llS~ip~AlSnV~kE~~fkd~~  297 (307)
                      ++..+|.+.|.+|+...-.+.++-|..|+++|+++.
T Consensus       164 ~~g~~ns~~G~~Ll~~~L~fDgfTn~tQd~lf~~~k  199 (327)
T KOG1581|consen  164 KSGRENSPIGILLLFGYLLFDGFTNATQDSLFKKYK  199 (327)
T ss_pred             ccCCCCchHhHHHHHHHHHHHhhHHhHHHHHhccCC
Confidence            333479999999999999999999999999999653

>PF13536 EmrE: Multidrug resistance efflux transporter

Probab=98.50  E-value=7.8e-08  Score=78.41  Aligned_cols=99  Identities=20%  Similarity=0.193  Sum_probs=77.5

Q ss_pred             HHHHHHHHHHhcCccchhhhcCCCccchHhhHHHH-HHHHHHHhhhccccccHHHHhccchHHHHHHHHHHHhccccccc
Q 021784          160 VYFSILYLRYHAGIVTDEMLSMPKAPFVAVGLLEA-LAAATGMAAGAILSGASIPILSQTFLVWQILLSIIFLGRRYRVN  238 (307)
Q Consensus       160 vyf~Il~~r~~~~~it~eml~~Pk~kfli~GllDa-l~~~L~viA~~ytsgs~~~LL~q~~IP~tmllS~ifLk~RY~~~  238 (307)
                      +...+...+.+.++..++.+.-|+++..+.|++.. .+..+.+.|..|+|+ ...++.+...+|+++++.+++|+|.+..
T Consensus        11 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~a~~~~~~-~v~~i~~~~pi~~~ll~~~~~~er~~~~   89 (113)
T PF13536_consen   11 FLLIILLIRGRLRDLFRALRRKPWLWLILAGLLGFGVAYLLFFYALSYAPA-LVAAIFSLSPIFTALLSWLFFKERLSPR   89 (113)
T ss_pred             HHHHHHHHHccHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHhCcH-HHHHHHHHHHHHHHHHHHHHhcCCCCHH
Confidence            33344444433333444455555455566688886 899999999999995 7779999999999999999999999999


Q ss_pred             ccchhhheeeceeeEeecCCC
Q 021784          239 QLFGCFLVGIGVIITVASGSN  259 (307)
Q Consensus       239 qi~G~~IVl~Glivvv~sgs~  259 (307)
                      +++|+.++++|++++..++.+
T Consensus        90 ~~~a~~l~~~Gv~li~~~~~~  110 (113)
T PF13536_consen   90 RWLAILLILIGVILIAWSDLT  110 (113)
T ss_pred             HHHHHHHHHHHHHHHhhhhcc
Confidence            999999999999998887543

>COG0697 RhaT Permeases of the drug/metabolite transporter (DMT) superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / General function prediction only]

Probab=98.41  E-value=4.5e-06  Score=74.93  Aligned_cols=166  Identities=22%  Similarity=0.185  Sum_probs=113.9

Q ss_pred             HHHHHHHHhhhhhHHHHHHHhCCCCChhHHHHHHhhhhhHHHHHHHHHHHHhcCccchhhhcCCCc-cchHhhHHHHHHH
Q 021784          119 IAAAVTVLLGVGNRVLYKLALVPLKHYPFFLAQLATFGYVAVYFSILYLRYHAGIVTDEMLSMPKA-PFVAVGLLEALAA  197 (307)
Q Consensus       119 i~~i~~Vi~Gv~N~Vl~Kl~~~~~~nYp~Fl~q~~t~~yv~vyf~Il~~r~~~~~it~eml~~Pk~-kfli~GllDal~~  197 (307)
                      ++.+..-+....+....|...+.  +.|.+...+..+...... .+...+....  .......|++ ..+.-++..+...
T Consensus        10 ~~~l~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~-~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~   84 (292)
T COG0697          10 LALLLWGLLWGLSFIALKLAVES--LDPFLFAAALRFLIAALL-LLPLLLLEPR--GLRPALRPWLLLLLLALLGLALPF   84 (292)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhcc--cCChHHHHHHHHHHHHHH-HHHHHHhhcc--cccccccchHHHHHHHHHHHHHHH
Confidence            33334435566677777776665  455554444322222222 1111111110  0011112223 3444557788899


Q ss_pred             HHHHhhhccccccHHHHhccchHHHHHHHHH-HHhcccccccccchhhheeeceeeEeecCCCCCCCCCCcchHHHHHHH
Q 021784          198 ATGMAAGAILSGASIPILSQTFLVWQILLSI-IFLGRRYRVNQLFGCFLVGIGVIITVASGSNPGHSLKGAGIFWSLLMI  276 (307)
Q Consensus       198 ~L~viA~~ytsgs~~~LL~q~~IP~tmllS~-ifLk~RY~~~qi~G~~IVl~Glivvv~sgs~~g~s~~~~~vlw~lL~l  276 (307)
                      .+.+.+..|++.....++......++.+++. +++|+|.+..++.|.++..+|++++..++.....   . ...++++.+
T Consensus        85 ~~~~~~~~~~~~~~~~~l~~~~p~~~~~~~~~~~~~e~~~~~~~~~~~~~~~Gv~lv~~~~~~~~~---~-~~~g~~~~l  160 (292)
T COG0697          85 LLLFLALKYTSASVASLIIGLLPLFTALLAVLLLLGERLSLLQILGILLALAGVLLILLGGGGGGI---L-SLLGLLLAL  160 (292)
T ss_pred             HHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHccCCCcHHHHHHHHHHHHhHHheecCCCcchh---H-HHHHHHHHH
Confidence            9999999999999999999999999999996 7779999999999999999999999887543211   1 578899999


Q ss_pred             HHhhHHHHHHHHHHHhh
Q 021784          277 VSFLLQAADTVLKEVIF  293 (307)
Q Consensus       277 lS~ip~AlSnV~kE~~f  293 (307)
                      ++.+..|+.+++.++..
T Consensus       161 ~a~~~~a~~~~~~~~~~  177 (292)
T COG0697         161 AAALLWALYTALVKRLS  177 (292)
T ss_pred             HHHHHHHHHHHHHHHhc
Confidence            99999999999999765

>KOG1583 consensus UDP-N-acetylglucosamine transporter [Carbohydrate transport and metabolism]

Probab=98.38  E-value=3.4e-07  Score=87.45  Aligned_cols=177  Identities=22%  Similarity=0.236  Sum_probs=111.5

Q ss_pred             HHHHHHHHhhhh-hHHHHHHHhCCCCChhHHHHHHhhhhhHHHHHHHHHHHHhcCccchhhhcCCCccchHhhHHHHHHH
Q 021784          119 IAAAVTVLLGVG-NRVLYKLALVPLKHYPFFLAQLATFGYVAVYFSILYLRYHAGIVTDEMLSMPKAPFVAVGLLEALAA  197 (307)
Q Consensus       119 i~~i~~Vi~Gv~-N~Vl~Kl~~~~~~nYp~Fl~q~~t~~yv~vyf~Il~~r~~~~~it~eml~~Pk~kfli~GllDal~~  197 (307)
                      ++.+..|..|++ |.++.-. +.+...-..-+-.+.+|.|+...+.+..-+++.-     ...+|-+.|+++-.+=...|
T Consensus         5 ~~ai~~vf~GCcsnvv~lE~-L~~~~pgsgNLITFaqFlFia~eGlif~skf~~~-----k~kiplk~Y~i~V~mFF~vn   78 (330)
T KOG1583|consen    5 AAAISLVFGGCCSNVVFLEL-LVRNEPGSGNLITFAQFLFIATEGLIFTSKFFTV-----KPKIPLKDYAITVAMFFIVN   78 (330)
T ss_pred             HHHHHHHHHhhhchHHHHHH-HHHhCCCCeeehHHHHHHHHHHhceeeecccccc-----CCCCchhhhheehheeeeee
Confidence            344555555555 5554444 3332222233444555777776665533232221     13345444544332222222


Q ss_pred             HHHHhhhc-cccccHHHHhccchHHHHHHHHHHHhcccccccccchhhheeeceeeEeecCCCCCC---------CCCCc
Q 021784          198 ATGMAAGA-ILSGASIPILSQTFLVWQILLSIIFLGRRYRVNQLFGCFLVGIGVIITVASGSNPGH---------SLKGA  267 (307)
Q Consensus       198 ~L~viA~~-ytsgs~~~LL~q~~IP~tmllS~ifLk~RY~~~qi~G~~IVl~Glivvv~sgs~~g~---------s~~~~  267 (307)
                      ..-..|.. ..|.++-.+++......+|+++++++||||+..||..++++.+|++++-.-.+..+.         +..+.
T Consensus        79 v~NN~al~f~I~~PlHiIfRsgsll~nM~~g~il~~k~Ys~~Qy~Sv~~iTiGiiIcTl~s~~d~~~~~~~l~~~~~~~~  158 (330)
T KOG1583|consen   79 VTNNYALKFNIPMPLHIIFRSGSLLANMILGWILLGKRYSLRQYSSVLMITIGIIICTLFSSKDGRSKLSGLDSGSAQSD  158 (330)
T ss_pred             eeccceeeecccceEEEEEecCcHHHHHHHHHHhccceeehhhhhhHHhhhhhheeEEeecCcchhhhhcccccCccccc
Confidence            23233333 678888999999999999999999999999999999999999999887663221111         00111


Q ss_pred             c---hHHHHHHHHHhhHHHHHHHHHHHhhhhhhhhcc
Q 021784          268 G---IFWSLLMIVSFLLQAADTVLKEVIFLDAAQRLK  301 (307)
Q Consensus       268 ~---vlw~lL~llS~ip~AlSnV~kE~~fkd~~~~l~  301 (307)
                      -   .+|..+..++.+..|..-.|+|..+++|-|.-|
T Consensus       159 ~~~w~iGi~lL~~al~~sa~mgiyqE~~Y~kyGKh~~  195 (330)
T KOG1583|consen  159 FFWWLIGIALLVFALLLSAYMGIYQETTYQKYGKHWK  195 (330)
T ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCChH
Confidence            1   455778889999999999999999999877543

>KOG1441 consensus Glucose-6-phosphate/phosphate and phosphoenolpyruvate/phosphate antiporter [Carbohydrate transport and metabolism; Amino acid transport and metabolism]

Probab=98.36  E-value=3.9e-06  Score=81.32  Aligned_cols=174  Identities=19%  Similarity=0.265  Sum_probs=137.5

Q ss_pred             ccchHHHHHHHHHHHhhhhhHHHHHHHhCC-CCChhHHHHHHhhhhhHHHHHHHHHHHHhcCccchhh--hcCCCccchH
Q 021784          112 DRRVEIVIAAAVTVLLGVGNRVLYKLALVP-LKHYPFFLAQLATFGYVAVYFSILYLRYHAGIVTDEM--LSMPKAPFVA  188 (307)
Q Consensus       112 ~~~~~v~i~~i~~Vi~Gv~N~Vl~Kl~~~~-~~nYp~Fl~q~~t~~yv~vyf~Il~~r~~~~~it~em--l~~Pk~kfli  188 (307)
                      ++.....++...-..+.+...+..|..+++ -++||.+++.++.+.=...+.   ..+ ..+..+...  .+.+.+..+-
T Consensus        13 ~~~~~~~~~~~~w~~~~v~~~~~nK~il~~~~f~~p~~lt~~~~~~~~l~~~---v~~-~l~~~~~~~~~~~~~~~~llp   88 (316)
T KOG1441|consen   13 KKILRIGIAFAIWYVLSVGVIILNKYILSKYGFPFPITLTMLHLFCGALALL---VIK-VLKLVPPSKISSKLPLRTLLP   88 (316)
T ss_pred             chhHHHHHHHHHHhhhheeeEEeeHhhhccCCCCCccHHHHHHHHHHHHHHH---HHH-HhcCCCCCccccccchHHHHH
Confidence            466777777888888899999999999998 669999999884322111111   111 111111111  3345567888


Q ss_pred             hhHHHHHHHHHHHhhhccccccHHHHhccchHHHHHHHHHHHhcccccccccchhhheeeceeeEeecCCCCCCCCCCcc
Q 021784          189 VGLLEALAAATGMAAGAILSGASIPILSQTFLVWQILLSIIFLGRRYRVNQLFGCFLVGIGVIITVASGSNPGHSLKGAG  268 (307)
Q Consensus       189 ~GllDal~~~L~viA~~ytsgs~~~LL~q~~IP~tmllS~ifLk~RY~~~qi~G~~IVl~Glivvv~sgs~~g~s~~~~~  268 (307)
                      +|++-..+..++..++.|+|.+-.|++--.++|++.++++++.+++|+..-++-.+.++.|+.++-..+       .+-.
T Consensus        89 l~~~~~~~~v~~n~Sl~~v~VsF~q~iKa~~P~~tvl~~~~~~~~~~s~~~~lsL~piv~GV~ias~~e-------~~fn  161 (316)
T KOG1441|consen   89 LGLVFCISHVLGNVSLSYVPVSFYQTIKALMPPFTVLLSVLLLGKTYSSMTYLSLLPIVFGVAIASVTE-------LSFN  161 (316)
T ss_pred             HHHHHHHHHHhcchhhhccchhHHHHHHhhcchhHHHHHHHHhCCCCcceEEEEEEEeeeeEEEeeecc-------cccc
Confidence            999999999999999999999999999999999999999999999999999999999999998877632       2345


Q ss_pred             hHHHHHHHHHhhHHHHHHHHHHHhhhhh
Q 021784          269 IFWSLLMIVSFLLQAADTVLKEVIFLDA  296 (307)
Q Consensus       269 vlw~lL~llS~ip~AlSnV~kE~~fkd~  296 (307)
                      ++|-+..++|.+.-|++|++.|+.+++.
T Consensus       162 ~~G~i~a~~s~~~~al~~I~~~~ll~~~  189 (316)
T KOG1441|consen  162 LFGFISAMISNLAFALRNILSKKLLTSK  189 (316)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhhcc
Confidence            7888889999999999999999988643

>TIGR00950 2A78 Carboxylate/Amino Acid/Amine Transporter

Probab=98.30  E-value=4.4e-06  Score=75.40  Aligned_cols=107  Identities=19%  Similarity=0.072  Sum_probs=90.4

Q ss_pred             ccchHhhH-HHHHHHHHHHhhhccccccHHHHhccchHHHHHHHHHHHhcccccccccchhhheeeceeeEeecCCCCCC
Q 021784          184 APFVAVGL-LEALAAATGMAAGAILSGASIPILSQTFLVWQILLSIIFLGRRYRVNQLFGCFLVGIGVIITVASGSNPGH  262 (307)
Q Consensus       184 ~kfli~Gl-lDal~~~L~viA~~ytsgs~~~LL~q~~IP~tmllS~ifLk~RY~~~qi~G~~IVl~Glivvv~sgs~~g~  262 (307)
                      +++++.|. +-.+...+.+.|..|++.....++.+....++++++.+|+|+|.+..|++|+.+.++|+++...++.    
T Consensus        47 ~~~~~~~~~~~~l~~~~~~~a~~~~~~~~~~ii~~~~P~~~~~~~~l~~~e~~~~~~~~gi~i~~~Gv~li~~~~~----  122 (260)
T TIGR00950        47 LRLLLLGALQIGVFYVLYFVAVKRLPVGEAALLLYLAPLYVTLLSDLMGKERPRKLVLLAAVLGLAGAVLLLSDGN----  122 (260)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhcChhhhHHHHhhhHHHHHHHHHHHccCCCcHHHHHHHHHHHHhHHhhccCCc----
Confidence            34566664 4788889999999999999999999999999999999999999999999999999999988764431    


Q ss_pred             CCCCcchHHHHHHHHHhhHHHHHHHHHHHhhhhh
Q 021784          263 SLKGAGIFWSLLMIVSFLLQAADTVLKEVIFLDA  296 (307)
Q Consensus       263 s~~~~~vlw~lL~llS~ip~AlSnV~kE~~fkd~  296 (307)
                        .+....|+++.++|.+..|+.+++.-+..++.
T Consensus       123 --~~~~~~G~~~~l~a~~~~a~~~~~~k~~~~~~  154 (260)
T TIGR00950       123 --LSINPAGLLLGLGSGISFALGTVLYKRLVKKE  154 (260)
T ss_pred             --ccccHHHHHHHHHHHHHHHHHHHHHhHHhhcC
Confidence              12446789999999999999999977765543

>PRK11453 O-acetylserine/cysteine export protein; Provisional

Probab=98.19  E-value=2.3e-05  Score=73.60  Aligned_cols=105  Identities=18%  Similarity=0.258  Sum_probs=79.5

Q ss_pred             chHhhHHHHHHH-HHHHhhhcc-ccccHHHHhccchHHHHHHHHHHHhcccccccccchhhheeeceeeEeecCCCCCCC
Q 021784          186 FVAVGLLEALAA-ATGMAAGAI-LSGASIPILSQTFLVWQILLSIIFLGRRYRVNQLFGCFLVGIGVIITVASGSNPGHS  263 (307)
Q Consensus       186 fli~GllDal~~-~L~viA~~y-tsgs~~~LL~q~~IP~tmllS~ifLk~RY~~~qi~G~~IVl~Glivvv~sgs~~g~s  263 (307)
                      .+..|++=.... .+.+.+..| +|.....++.+...+++++++++++|+|.+..|++|+++.++|+.+...++.+.   
T Consensus        61 ~~~~g~~~~~~~~~~~~~~~~~~~~a~~a~~l~~~~pi~~~ll~~~~l~e~~~~~~~~~~~l~~~Gv~ll~~~~~~~---  137 (299)
T PRK11453         61 LLGYGLTISFGQFAFLFCAINFGMPAGLASLVLQAQAFFTIVLGAFTFGERLQGKQLAGIALAIFGVLVLIEDSLNG---  137 (299)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHhHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHhHHHhccccCCC---
Confidence            333455433333 344567777 466677888899989999999999999999999999999999998877542221   


Q ss_pred             CCCcchHHHHHHHHHhhHHHHHHHHHHHhhh
Q 021784          264 LKGAGIFWSLLMIVSFLLQAADTVLKEVIFL  294 (307)
Q Consensus       264 ~~~~~vlw~lL~llS~ip~AlSnV~kE~~fk  294 (307)
                       .+....++++.+++++..|+.+++..+..+
T Consensus       138 -~~~~~~G~~l~l~aal~~a~~~v~~~~~~~  167 (299)
T PRK11453        138 -QHVAMLGFMLTLAAAFSWACGNIFNKKIMS  167 (299)
T ss_pred             -cchhHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence             122457999999999999999999887543

>PRK11689 aromatic amino acid exporter; Provisional

Probab=98.18  E-value=2.5e-05  Score=73.32  Aligned_cols=163  Identities=12%  Similarity=0.011  Sum_probs=101.8

Q ss_pred             HHHHHHhhhhhHHHHHHHhCCCCChhHHHHHHhhhhhHHHHHHHHHHHHhcCccchhhhcCCCccchHhhHHHHHHH-HH
Q 021784          121 AAVTVLLGVGNRVLYKLALVPLKHYPFFLAQLATFGYVAVYFSILYLRYHAGIVTDEMLSMPKAPFVAVGLLEALAA-AT  199 (307)
Q Consensus       121 ~i~~Vi~Gv~N~Vl~Kl~~~~~~nYp~Fl~q~~t~~yv~vyf~Il~~r~~~~~it~eml~~Pk~kfli~GllDal~~-~L  199 (307)
                      .++.+++-..|-+..|...+.+.  |+.+..+-...-.++.+++  .+  .   ++ .+ ..+|++++.+.+-.... .+
T Consensus         9 ~l~a~~~Wg~~~~~~k~~~~~~~--P~~~~~~R~~~a~l~l~~~--~~--~---~~-~~-~~~~~~~~~~~l~~~~~~~~   77 (295)
T PRK11689          9 GLIAILLWSTMVGLIRGVSESLG--PVGGAAMIYSVSGLLLLLT--VG--F---PR-LR-QFPKRYLLAGGLLFVSYEIC   77 (295)
T ss_pred             HHHHHHHHHHHHHHHHHHHccCC--hHHHHHHHHHHHHHHHHHH--cc--c---cc-cc-cccHHHHHHHhHHHHHHHHH
Confidence            33344445577889998877543  3333333221111111111  11  1   11 11 11345566666643333 33


Q ss_pred             HHhhhc----cccccHHHHhccchHHHHHHHHHHHhcccccccccchhhheeeceeeEeecCCC-CC-C--CCCCcchHH
Q 021784          200 GMAAGA----ILSGASIPILSQTFLVWQILLSIIFLGRRYRVNQLFGCFLVGIGVIITVASGSN-PG-H--SLKGAGIFW  271 (307)
Q Consensus       200 ~viA~~----ytsgs~~~LL~q~~IP~tmllS~ifLk~RY~~~qi~G~~IVl~Glivvv~sgs~-~g-~--s~~~~~vlw  271 (307)
                      .+.|..    +++.....++......++++++++++|+|.+..|++|+++.++|+.+...++.+ +. +  ...+....|
T Consensus        78 ~~~a~~~~~~~~~a~~a~~l~~~~Pi~~~ll~~~~~~e~~~~~~~~g~~l~~~Gv~li~~~~~~~~~~~~~~~~~~~~~G  157 (295)
T PRK11689         78 LALSLGYANTRRQAIEVGMVNYLWPSLTILFAVLFNGQKANWLLIPGLLLALAGVAWVLGGDNGLSLAELINNIASNPLS  157 (295)
T ss_pred             HHHHHHHhhccccchHHHHHHHHhHHHHHHHHHHHhcCCccHHHHHHHHHHHHhHhheecCCccchhhhhhhccccChHH
Confidence            344544    456566688999999999999999999999999999999999999887765321 10 0  011234568


Q ss_pred             HHHHHHHhhHHHHHHHHHHHhhh
Q 021784          272 SLLMIVSFLLQAADTVLKEVIFL  294 (307)
Q Consensus       272 ~lL~llS~ip~AlSnV~kE~~fk  294 (307)
                      +++.++|.+.+|+.+++-++.-+
T Consensus       158 ~~~~l~aa~~~A~~~v~~k~~~~  180 (295)
T PRK11689        158 YGLAFIGAFIWAAYCNVTRKYAR  180 (295)
T ss_pred             HHHHHHHHHHHHHHHHHHhhccC
Confidence            99999999999999999888543

>TIGR03340 phn_DUF6 phosphonate utilization associated putative membrane protein

Probab=98.11  E-value=1.7e-05  Score=73.67  Aligned_cols=102  Identities=10%  Similarity=-0.005  Sum_probs=82.5

Q ss_pred             ccchH-hhHHHHHHHHHHHhhhccccccHHHHhccchHHHHHHHHHHHhcccccccccchhhheeeceeeEeecCCCCCC
Q 021784          184 APFVA-VGLLEALAAATGMAAGAILSGASIPILSQTFLVWQILLSIIFLGRRYRVNQLFGCFLVGIGVIITVASGSNPGH  262 (307)
Q Consensus       184 ~kfli-~GllDal~~~L~viA~~ytsgs~~~LL~q~~IP~tmllS~ifLk~RY~~~qi~G~~IVl~Glivvv~sgs~~g~  262 (307)
                      |.+++ -|+..+....+...|+++++.....++.....+++++++++++|+|.+.+|++|+.++++|+.+...++.. . 
T Consensus        63 ~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~l~~~~p~~~~l~~~~~~~e~~~~~~~~g~~~~~~Gv~ll~~~~~~-~-  140 (281)
T TIGR03340        63 WLLLAISAVANMVYFLGLAQAYHHADVGLVYPLARSSPLLVAIWATLTLGETLSPLAWLGILIITLGLLVLGLSRFA-Q-  140 (281)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhcCChhhhhhHHhhhHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhccccc-c-
Confidence            33444 44568888999999999999999999999999999999999999999999999999999999876654321 1 


Q ss_pred             CCCCcchHHHHHHHHHhhHHHHHHHHHHH
Q 021784          263 SLKGAGIFWSLLMIVSFLLQAADTVLKEV  291 (307)
Q Consensus       263 s~~~~~vlw~lL~llS~ip~AlSnV~kE~  291 (307)
                          ....+.++.+++.+.+|+.+++..+
T Consensus       141 ----~~~~g~~~~l~aal~~a~~~i~~k~  165 (281)
T TIGR03340       141 ----HRRKAYAWALAAALGTAIYSLSDKA  165 (281)
T ss_pred             ----cchhHHHHHHHHHHHHHHhhhhccc
Confidence                1234556788888899998886554

This family of hydrophobic proteins has some homology to families of integral membrane proteins such as (pfam00892) and may be a permease. It occurs in the vicinity of various types of operons for the catabolism of phosphonates in Vibrio, Pseudomonas, Polaromonas and Thiomicrospira.

>PF00892 EamA: EamA-like transporter family; InterPro: IPR000620 This domain is found in proteins including the Erwinia chrysanthemi PecM protein, which is involved in pectinase, cellulase and blue pigment regulation; and the Salmonella typhimurium PagO protein, the function of which is unknown

Probab=98.06  E-value=6.2e-06  Score=65.17  Aligned_cols=69  Identities=32%  Similarity=0.403  Sum_probs=63.6

Q ss_pred             cchHhhHHH-HHHHHHHHhhhccccccHHHHhccchHHHHHHHHHHHhcccccccccchhhheeeceeeE
Q 021784          185 PFVAVGLLE-ALAAATGMAAGAILSGASIPILSQTFLVWQILLSIIFLGRRYRVNQLFGCFLVGIGVIIT  253 (307)
Q Consensus       185 kfli~GllD-al~~~L~viA~~ytsgs~~~LL~q~~IP~tmllS~ifLk~RY~~~qi~G~~IVl~Glivv  253 (307)
                      .++++|.+. +.+..+.+.|..+++.+...++.....+++++++++++|+|.+..|++|++++++|++++
T Consensus        55 ~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~pv~~~i~~~~~~~e~~~~~~~~g~~l~~~g~~l~  124 (126)
T PF00892_consen   55 WLLFLGLLGTALAYLLYFYALKYISASIVSILQYLSPVFAAILGWLFLGERPSWRQIIGIILIIIGVVLI  124 (126)
T ss_pred             hhhHhhccceehHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHH
Confidence            466678774 999999999999999999999999999999999999999999999999999999998754

Many members of this family are classed as drug/metabolite transporters and have no known function. They are predicted to be integral membrane proteins and many of the proteins contain two copies of this domain [].; GO: 0016020 membrane

>PRK15430 putative chloramphenical resistance permease RarD; Provisional

Probab=98.03  E-value=2.6e-05  Score=73.23  Aligned_cols=92  Identities=18%  Similarity=0.121  Sum_probs=78.2

Q ss_pred             hHHHHHHHHHHHhhhccccccHHHHhccchHHHHHHHHHHHhcccccccccchhhheeeceeeEeecCCCCCCCCCCcch
Q 021784          190 GLLEALAAATGMAAGAILSGASIPILSQTFLVWQILLSIIFLGRRYRVNQLFGCFLVGIGVIITVASGSNPGHSLKGAGI  269 (307)
Q Consensus       190 GllDal~~~L~viA~~ytsgs~~~LL~q~~IP~tmllS~ifLk~RY~~~qi~G~~IVl~Glivvv~sgs~~g~s~~~~~v  269 (307)
                      +++=+.+..+.+.|..++|.....++..+...++++++++|+|+|.+..|++|+++.++|+++...++   +    +.  
T Consensus        80 ~~~~~~~~~~~~~a~~~~~~~~a~~l~~~~Pi~v~l~~~~~l~E~~~~~~~~g~~l~~~Gv~li~~~~---~----~~--  150 (296)
T PRK15430         80 AVLIGGNWLLFIWAVNNHHMLEASLGYFINPLVNIVLGMIFLGERFRRMQWLAVILAICGVLVQLWTF---G----SL--  150 (296)
T ss_pred             HHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHc---C----Cc--
Confidence            35566678899999999999999999999999999999999999999999999999999998876442   1    11  


Q ss_pred             HHHHHHHHHhhHHHHHHHHHHHh
Q 021784          270 FWSLLMIVSFLLQAADTVLKEVI  292 (307)
Q Consensus       270 lw~lL~llS~ip~AlSnV~kE~~  292 (307)
                        +++.++|++.+|+.+++.++.
T Consensus       151 --~~~~l~aa~~~a~~~i~~r~~  171 (296)
T PRK15430        151 --PIIALGLAFSFAFYGLVRKKI  171 (296)
T ss_pred             --cHHHHHHHHHHHHHHHHHHhc
Confidence              146788899999999998874

>TIGR00688 rarD rarD protein

Probab=98.02  E-value=3.6e-05  Score=70.26  Aligned_cols=96  Identities=17%  Similarity=0.133  Sum_probs=80.5

Q ss_pred             chHhhHHHHHHHHHHHhhhccccccHHHHhccchHHHHHHHHHHHhcccccccccchhhheeeceeeEeecCCCCCCCCC
Q 021784          186 FVAVGLLEALAAATGMAAGAILSGASIPILSQTFLVWQILLSIIFLGRRYRVNQLFGCFLVGIGVIITVASGSNPGHSLK  265 (307)
Q Consensus       186 fli~GllDal~~~L~viA~~ytsgs~~~LL~q~~IP~tmllS~ifLk~RY~~~qi~G~~IVl~Glivvv~sgs~~g~s~~  265 (307)
                      ..+.|++=+.+..+.+.|.+|++.....++.++.-.|+++++.+|+|+|.+..|++|+++.++|+++...++   +    
T Consensus        73 ~~~~g~~~~~~~~~~~~a~~~~~~~~a~~l~~~~Pi~~~lla~~~l~Ek~~~~~~l~~~~~~~Gv~li~~~~---~----  145 (256)
T TIGR00688        73 LLLCGLLIGFNWWLFIWAVNNGSSLEVSLGYLINPLVMVALGRVFLKERISRFQFIAVIIATLGVISNIVLK---G----  145 (256)
T ss_pred             HHHHHHHHHHHHHHHHHHHHcchHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHc---C----
Confidence            455677778888999999999999999999999999999999999999999999999999999998765432   1    


Q ss_pred             CcchHHHHHHHHHhhHHHHHHHHHHHh
Q 021784          266 GAGIFWSLLMIVSFLLQAADTVLKEVI  292 (307)
Q Consensus       266 ~~~vlw~lL~llS~ip~AlSnV~kE~~  292 (307)
                      +.    .++.+++.+.+|+.+++.++.
T Consensus       146 ~~----~~~~l~aa~~~a~~~i~~~~~  168 (256)
T TIGR00688       146 SL----PWEALVLAFSFTAYGLIRKAL  168 (256)
T ss_pred             Cc----hHHHHHHHHHHHHHHHHHhhc
Confidence            11    135678899999988887764

This uncharacterized protein is predicted to have many membrane-spanning domains.

>PRK11272 putative DMT superfamily transporter inner membrane protein; Provisional

Probab=98.00  E-value=7.2e-05  Score=70.02  Aligned_cols=164  Identities=13%  Similarity=0.141  Sum_probs=110.0

Q ss_pred             hHHHHHHHHHHHhhhhhHHHHHHHhCCCCChhHHHHHHhhhhhHHHHHHHHHHHHhcCccchhhhcCCCccchHhhHHH-
Q 021784          115 VEIVIAAAVTVLLGVGNRVLYKLALVPLKHYPFFLAQLATFGYVAVYFSILYLRYHAGIVTDEMLSMPKAPFVAVGLLE-  193 (307)
Q Consensus       115 ~~v~i~~i~~Vi~Gv~N~Vl~Kl~~~~~~nYp~Fl~q~~t~~yv~vyf~Il~~r~~~~~it~eml~~Pk~kfli~GllD-  193 (307)
                      +.+..+.+.+.++=..|-+..|...+.+.....  ..+-...-.++.+++...+ + +..++  + .++.++++.|.+- 
T Consensus         7 ~~~~~~~~~~~~iWg~~~~~~K~~~~~~~p~~~--~~~R~~~a~l~ll~~~~~~-~-~~~~~--~-~~~~~~~~~g~~~~   79 (292)
T PRK11272          7 LPLFGALFALYIIWGSTYLVIRIGVESWPPLMM--AGVRFLIAGILLLAFLLLR-G-HPLPT--L-RQWLNAALIGLLLL   79 (292)
T ss_pred             HHHHHHHHHHHHHHhhHHHHHHHHhccCCHHHH--HHHHHHHHHHHHHHHHHHh-C-CCCCc--H-HHHHHHHHHHHHHH
Confidence            455566666677777799999988875544332  2222211111222222222 1 11110  1 0123456677664 


Q ss_pred             HHHHHHHHhhh-ccccccHHHHhccchHHHHHHHHHHHhcccccccccchhhheeeceeeEeecCCCCCCCCCCcchHHH
Q 021784          194 ALAAATGMAAG-AILSGASIPILSQTFLVWQILLSIIFLGRRYRVNQLFGCFLVGIGVIITVASGSNPGHSLKGAGIFWS  272 (307)
Q Consensus       194 al~~~L~viA~-~ytsgs~~~LL~q~~IP~tmllS~ifLk~RY~~~qi~G~~IVl~Glivvv~sgs~~g~s~~~~~vlw~  272 (307)
                      +....+...+. .+++.....++......++++++.+ +|+|.++.|++|+++.++|+++....+.  .    +....++
T Consensus        80 ~~~~~~~~~~~~~~~~a~~a~~l~~~~Pl~~~lla~~-~~e~~~~~~~~~~~la~~Gv~ll~~~~~--~----~~~~~G~  152 (292)
T PRK11272         80 AVGNGMVTVAEHQNVPSGIAAVVVATVPLFTLCFSRL-FGIRTRKLEWLGIAIGLAGIVLLNSGGN--L----SGNPWGA  152 (292)
T ss_pred             HHHHHHHHHHHHccCcHHHHHHHHHHHHHHHHHHHHH-hcccCchhHHHHHHHHHHhHHHHhcCcc--c----ccchHHH
Confidence            45677778888 8898888899999999999999985 6999999999999999999887643211  1    2235789


Q ss_pred             HHHHHHhhHHHHHHHHHHHh
Q 021784          273 LLMIVSFLLQAADTVLKEVI  292 (307)
Q Consensus       273 lL~llS~ip~AlSnV~kE~~  292 (307)
                      ++.++|.+.+|+.+++.++.
T Consensus       153 l~~l~a~~~~a~~~~~~~~~  172 (292)
T PRK11272        153 ILILIASASWAFGSVWSSRL  172 (292)
T ss_pred             HHHHHHHHHHHHHHHHHHhc
Confidence            99999999999999998774

>KOG2765 consensus Predicted membrane protein [Function unknown]

Probab=97.83  E-value=5.5e-05  Score=74.92  Aligned_cols=103  Identities=33%  Similarity=0.306  Sum_probs=90.5

Q ss_pred             HhhHHHHHHHHHHHhhhccccccHHHHhccchHHHHHHHHHHHhcccccccccchhhheeeceeeEeecCCCCCC-CCCC
Q 021784          188 AVGLLEALAAATGMAAGAILSGASIPILSQTFLVWQILLSIIFLGRRYRVNQLFGCFLVGIGVIITVASGSNPGH-SLKG  266 (307)
Q Consensus       188 i~GllDal~~~L~viA~~ytsgs~~~LL~q~~IP~tmllS~ifLk~RY~~~qi~G~~IVl~Glivvv~sgs~~g~-s~~~  266 (307)
                      ....+=.++|+....|+.||+..++.+|+-++=-||+.++.+|...|+++.+.++++++++|++++...++.+.. ..++
T Consensus       164 ~fc~lWF~anl~~naALa~TsVAS~TilSStSs~FtL~la~if~~e~ft~sKllav~~si~GViiVt~~~s~~~~~~~a~  243 (416)
T KOG2765|consen  164 FFCPLWFLANLTSNAALAFTSVASTTILSSTSSFFTLFLAAIFPVERFTLSKLLAVFVSIAGVIIVTMGDSKQNSDLPAS  243 (416)
T ss_pred             HHHHHHHHHHHHHHHHhhhhhhhhhhhhhhcchHHHHHHHHHcCcchhhHHHHHHHHHhhccEEEEEeccccccccCCcc
Confidence            345556789999999999999999999999999999999999999999999999999999999999988764422 2456


Q ss_pred             cchHHHHHHHHHhhHHHHHHHHHH
Q 021784          267 AGIFWSLLMIVSFLLQAADTVLKE  290 (307)
Q Consensus       267 ~~vlw~lL~llS~ip~AlSnV~kE  290 (307)
                      ...+|+++-++|++.||+=.|.=-
T Consensus       244 ~~llG~llaL~sA~~YavY~vllk  267 (416)
T KOG2765|consen  244 RPLLGNLLALLSALLYAVYTVLLK  267 (416)
T ss_pred             chhHHHHHHHHHHHHHHHHHHHHH
Confidence            779999999999999999877643

>KOG1582 consensus UDP-galactose transporter related protein [Carbohydrate transport and metabolism]

Probab=97.49  E-value=0.00013  Score=70.13  Aligned_cols=173  Identities=16%  Similarity=0.203  Sum_probs=127.5

Q ss_pred             hHHHHHHHHHHHhhhhhHHHHHHHhC--CCCChhHHHHHHhhhhhHHHHHHHHHHHHhcCccchhhhcCCCccchHhhHH
Q 021784          115 VEIVIAAAVTVLLGVGNRVLYKLALV--PLKHYPFFLAQLATFGYVAVYFSILYLRYHAGIVTDEMLSMPKAPFVAVGLL  192 (307)
Q Consensus       115 ~~v~i~~i~~Vi~Gv~N~Vl~Kl~~~--~~~nYp~Fl~q~~t~~yv~vyf~Il~~r~~~~~it~eml~~Pk~kfli~Gll  192 (307)
                      ..-.+++.++...=..|-++.-+..+  .++.|.|+++..+...|.......+      ..+..+.+-.||+-|.+++++
T Consensus        42 ~QFlic~~g~Ff~Yl~yGy~qElif~~~gfkp~GWylTlvQf~~Ysg~glie~------~~~~~k~r~iP~rtY~~la~~  115 (367)
T KOG1582|consen   42 TQFLICSAGVFFLYLVYGYLQELIFNVEGFKPFGWYLTLVQFLVYSGFGLIEL------QLIQTKRRVIPWRTYVILAFL  115 (367)
T ss_pred             hhHHHHHhHHHHHHHHHHHHHHHHhccccCcccchHHHHHHHHHHHhhhheEE------EeecccceecchhHhhhhHhh
Confidence            34445555555555556666665555  4668999999988887765432211      113445677899999999999


Q ss_pred             HHHHHHHHHhhhccccccHHHHhccchHHHHHHHHHHHhcccccccccchhhheeeceeeEeecCCCCCCCCCCcchHHH
Q 021784          193 EALAAATGMAAGAILSGASIPILSQTFLVWQILLSIIFLGRRYRVNQLFGCFLVGIGVIITVASGSNPGHSLKGAGIFWS  272 (307)
Q Consensus       193 Dal~~~L~viA~~ytsgs~~~LL~q~~IP~tmllS~ifLk~RY~~~qi~G~~IVl~Glivvv~sgs~~g~s~~~~~vlw~  272 (307)
                      -+-..-|..-...|++=+-|.+.-|+-+.=+|+-..++=++||.+..+..+.+..+|++.--..|+...+   .-...|.
T Consensus       116 t~gtmGLsn~SlgYLNYPtQviFKccKliPVmiggifIqGkRY~v~d~~aA~lm~lGli~FTLADs~~sP---NF~~~Gv  192 (367)
T KOG1582|consen  116 TVGTMGLSNGSLGYLNYPTQVIFKCCKLIPVMIGGIFIQGKRYGVHDYIAAMLMSLGLIWFTLADSQTSP---NFNLIGV  192 (367)
T ss_pred             hhhccccCcCccccccCcHHHHHHhhhhhhhhheeeeeccccccHHHHHHHHHHHHHHHhhhhcccccCC---CcceeeH
Confidence            8888888888888999999999999999889999999999999999999999999999887766654322   3345555


Q ss_pred             HHHHHHhhHHHHHHHHHHHhhhhh
Q 021784          273 LLMIVSFLLQAADTVLKEVIFLDA  296 (307)
Q Consensus       273 lL~llS~ip~AlSnV~kE~~fkd~  296 (307)
                      .++-.+-+..|+--=.||+.+|..
T Consensus       193 ~mIsgALl~DA~iGNvQEk~m~~~  216 (367)
T KOG1582|consen  193 MMISGALLADAVIGNVQEKAMKMN  216 (367)
T ss_pred             HHHHHHHHHHHHhhHHHHHHHhhC
Confidence            555555566676666789888754

>COG2510 Predicted membrane protein [Function unknown]

Probab=97.44  E-value=0.001  Score=57.47  Aligned_cols=132  Identities=23%  Similarity=0.284  Sum_probs=89.0

Q ss_pred             HHHHHHHHhhhhhHHHHHHHhCCCCChhHHHHHHhhhhhHHHHHHHHHHHHhcCccchhhhcCCCccchHh-hHHHHHHH
Q 021784          119 IAAAVTVLLGVGNRVLYKLALVPLKHYPFFLAQLATFGYVAVYFSILYLRYHAGIVTDEMLSMPKAPFVAV-GLLEALAA  197 (307)
Q Consensus       119 i~~i~~Vi~Gv~N~Vl~Kl~~~~~~nYp~Fl~q~~t~~yv~vyf~Il~~r~~~~~it~eml~~Pk~kfli~-GllDal~~  197 (307)
                      ++.++--.+.....|+.|+-.+.+-  |-|-+..-+.+-......+++. +..-..+.| ..-+.|-|+++ |+.-.++-
T Consensus         6 ~~ALLsA~fa~L~~iF~KIGl~~vd--p~~At~IRtiVi~~~l~~v~~~-~g~~~~~~~-~~~k~~lflilSGla~glsw   81 (140)
T COG2510           6 IYALLSALFAGLTPIFAKIGLEGVD--PDFATTIRTIVILIFLLIVLLV-TGNWQAGGE-IGPKSWLFLILSGLAGGLSW   81 (140)
T ss_pred             HHHHHHHHHHHHHHHHHHHhccccC--ccHHHHHHHHHHHHHHHHHHHh-cCceecccc-cCcceehhhhHHHHHHHHHH
Confidence            3444445567778899999887443  2333333332222222122222 111111111 12223567665 46678888


Q ss_pred             HHHHhhhccccccHHHHhccchHHHHHHHHHHHhcccccccccchhhheeeceeeEe
Q 021784          198 ATGMAAGAILSGASIPILSQTFLVWQILLSIIFLGRRYRVNQLFGCFLVGIGVIITV  254 (307)
Q Consensus       198 ~L~viA~~ytsgs~~~LL~q~~IP~tmllS~ifLk~RY~~~qi~G~~IVl~Glivvv  254 (307)
                      ++-+.|...=..+...-++-..+.++.++|++|||.|.+..+++|+.++++|.+++.
T Consensus        82 l~Yf~ALk~G~as~VvPldk~svvl~~lls~lfL~E~ls~~~~iG~~LI~~Gailvs  138 (140)
T COG2510          82 LLYFRALKKGKASRVVPLDKTSVVLAVLLSILFLGERLSLPTWIGIVLIVIGAILVS  138 (140)
T ss_pred             HHHHHHHhcCCcceEEEcccccHHHHHHHHHHHhcCCCCHHHHHHHHHHHhCeeeEe
Confidence            888999988888888999999999999999999999999999999999999998864

>PRK10532 threonine and homoserine efflux system; Provisional

Probab=97.25  E-value=0.006  Score=57.25  Aligned_cols=161  Identities=12%  Similarity=-0.008  Sum_probs=98.4

Q ss_pred             hHHHHHHHHHHHhhhhhHHHHHHHhCCCCChhHHHHHHhhhhhHHHHHHHHHHHHhcCccchhhhcCCCccchHhhHHHH
Q 021784          115 VEIVIAAAVTVLLGVGNRVLYKLALVPLKHYPFFLAQLATFGYVAVYFSILYLRYHAGIVTDEMLSMPKAPFVAVGLLEA  194 (307)
Q Consensus       115 ~~v~i~~i~~Vi~Gv~N~Vl~Kl~~~~~~nYp~Fl~q~~t~~yv~vyf~Il~~r~~~~~it~eml~~Pk~kfli~GllDa  194 (307)
                      .-+..+.+.+++.+ .|.++.|...+.+....  +..+-...-.++.+++ ..+.+. ..+++.    +++.++.|++-.
T Consensus        12 ~~~~~~~la~~~~~-~~~~~~K~~~~~~~~~~--~~~~R~~~a~l~l~~~-~~~~~~-~~~~~~----~~~~~~~g~~~~   82 (293)
T PRK10532         12 LPILLLLIAMASIQ-SGASLAKSLFPLVGAPG--VTALRLALGTLILIAI-FKPWRL-RFAKEQ----RLPLLFYGVSLG   82 (293)
T ss_pred             hHHHHHHHHHHHHH-hhHHHHHHHHHHcCHHH--HHHHHHHHHHHHHHHH-HhHHhc-cCCHHH----HHHHHHHHHHHH
Confidence            33555666666666 56668998887433322  2222111111111111 111111 111111    134567888888


Q ss_pred             HHHHHHHhhhccccccHHHHhccchHHHHHHHHHHHhcccccccccchhhheeeceeeEeecCCCCCCCCCCcchHHHHH
Q 021784          195 LAAATGMAAGAILSGASIPILSQTFLVWQILLSIIFLGRRYRVNQLFGCFLVGIGVIITVASGSNPGHSLKGAGIFWSLL  274 (307)
Q Consensus       195 l~~~L~viA~~ytsgs~~~LL~q~~IP~tmllS~ifLk~RY~~~qi~G~~IVl~Glivvv~sgs~~g~s~~~~~vlw~lL  274 (307)
                      ..+.+.+.|.+|+|.....++..+...++++++    ++|.+  ++.++.+.++|+.+...++.+.    ++....++++
T Consensus        83 ~~~~~~~~al~~~~~~~a~~l~~t~Pi~~~ll~----~~~~~--~~~~~~i~~~Gv~li~~~~~~~----~~~~~~G~ll  152 (293)
T PRK10532         83 GMNYLFYLSIQTVPLGIAVALEFTGPLAVALFS----SRRPV--DFVWVVLAVLGLWFLLPLGQDV----SHVDLTGAAL  152 (293)
T ss_pred             HHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHh----cCChH--HHHHHHHHHHHHheeeecCCCc----ccCChHHHHH
Confidence            888999999999999988888877777777766    35544  4556777888987766443221    1234679999


Q ss_pred             HHHHhhHHHHHHHHHHHhhh
Q 021784          275 MIVSFLLQAADTVLKEVIFL  294 (307)
Q Consensus       275 ~llS~ip~AlSnV~kE~~fk  294 (307)
                      .+++.+.+|+.+++-.+.-+
T Consensus       153 ~l~aa~~~a~~~v~~r~~~~  172 (293)
T PRK10532        153 ALGAGACWAIYILSGQRAGA  172 (293)
T ss_pred             HHHHHHHHHHHHHHHHHHhc
Confidence            99999999999998665433

>KOG4510 consensus Permease of the drug/metabolite transporter (DMT) superfamily [General function prediction only]

Probab=97.22  E-value=0.00033  Score=67.26  Aligned_cols=108  Identities=19%  Similarity=0.253  Sum_probs=82.2

Q ss_pred             Cccch-HhhHHHHHHHHHHHhhhccccccHHHHhccchHHHHHHHHHHHhcccccccccchhhheeeceeeEeec----C
Q 021784          183 KAPFV-AVGLLEALAAATGMAAGAILSGASIPILSQTFLVWQILLSIIFLGRRYRVNQLFGCFLVGIGVIITVAS----G  257 (307)
Q Consensus       183 k~kfl-i~GllDal~~~L~viA~~ytsgs~~~LL~q~~IP~tmllS~ifLk~RY~~~qi~G~~IVl~Glivvv~s----g  257 (307)
                      +++++ +=|+.-..|-.+++.|+.|.|.+=..+....+-.+|.++++++||.+|+.++-+|..+.+.|+++.+=|    |
T Consensus        96 ~R~~LiLRg~mG~tgvmlmyya~~~mslaDA~vItFssPvft~ifaw~~LkE~~t~~eaL~s~itl~GVVLIvRPpFlFG  175 (346)
T KOG4510|consen   96 KRKWLILRGFMGFTGVMLMYYALMYMSLADAVVITFSSPVFTIIFAWAFLKEPFTKFEALGSLITLLGVVLIVRPPFLFG  175 (346)
T ss_pred             cEEEEEeehhhhhhHHHHHHHHHhhcchhheEEEEecChHHHHHHHHHHHcCCCcHHHHHHHHHhhheEEEEecCCcccC
Confidence            34444 467778889999999999999999999999999999999999999999999999999999999998876    3


Q ss_pred             CCC-CC-CCC-CcchHHHHHHHHHhhHHHHHHHHHH
Q 021784          258 SNP-GH-SLK-GAGIFWSLLMIVSFLLQAADTVLKE  290 (307)
Q Consensus       258 s~~-g~-s~~-~~~vlw~lL~llS~ip~AlSnV~kE  290 (307)
                      +.. +. +.. +....+...-+.|..+.|--.++-.
T Consensus       176 ~~t~g~~~s~~~~~~~gt~aai~s~lf~asvyIilR  211 (346)
T KOG4510|consen  176 DTTEGEDSSQVEYDIPGTVAAISSVLFGASVYIILR  211 (346)
T ss_pred             CCccccccccccccCCchHHHHHhHhhhhhHHHHHH
Confidence            322 11 111 3334456666666666554444433

>PF05653 Mg_trans_NIPA: Magnesium transporter NIPA; InterPro: IPR008521 This family consists of several eukaryotic proteins of unknown function

Probab=97.22  E-value=0.00024  Score=68.17  Aligned_cols=75  Identities=24%  Similarity=0.425  Sum_probs=66.3

Q ss_pred             cchHhh-HHHHHHHHHHHhhhccccccHHHHhccchHHHHHHHHHHHhcccccccccchhhheeeceeeEeecCCC
Q 021784          185 PFVAVG-LLEALAAATGMAAGAILSGASIPILSQTFLVWQILLSIIFLGRRYRVNQLFGCFLVGIGVIITVASGSN  259 (307)
Q Consensus       185 kfli~G-llDal~~~L~viA~~ytsgs~~~LL~q~~IP~tmllS~ifLk~RY~~~qi~G~~IVl~Glivvv~sgs~  259 (307)
                      +.++.| ++++++..+.+.|+.+.|.++.+-|....++++++++.++||+|.+..+++|+.+|++|.++.+..+..
T Consensus        51 ~~W~~G~~~~~~g~~~~~~Al~~ap~slv~Plg~~~lv~~~~~a~~~l~e~~~~~~~~G~~l~i~G~~liv~~~~~  126 (300)
T PF05653_consen   51 PLWWIGLLLMVLGEILNFVALGFAPASLVAPLGALSLVFNAVLARFFLGEKLTRRDIVGCALIILGSVLIVIFAPK  126 (300)
T ss_pred             HHHHHHHHHHhcchHHHHHHHHhhhHHHHHHHHhhhhhhHHHHhHHHhcccchHhHHhhHHHHHhhheeeEEeCCC
Confidence            344455 357899999999999999999999999999999999999999999999999999999999887765443

>TIGR00950 2A78 Carboxylate/Amino Acid/Amine Transporter

Probab=97.15  E-value=0.0048  Score=55.68  Aligned_cols=65  Identities=25%  Similarity=0.311  Sum_probs=59.0

Q ss_pred             chHhhHHH-HHHHHHHHhhhccccccHHHHhccchHHHHHHHHHHHhcccccccccchhhheeece
Q 021784          186 FVAVGLLE-ALAAATGMAAGAILSGASIPILSQTFLVWQILLSIIFLGRRYRVNQLFGCFLVGIGV  250 (307)
Q Consensus       186 fli~GllD-al~~~L~viA~~ytsgs~~~LL~q~~IP~tmllS~ifLk~RY~~~qi~G~~IVl~Gl  250 (307)
                      .+.+|.+. ..+..+.+.|..+++......+.....++++++++++++++.+..|++|+.+++.|+
T Consensus       194 ~~~~~~~~~~~~~~~~~~a~~~~~~~~~s~~~~~~pv~~~ll~~~~~~E~~~~~~~~G~~li~~g~  259 (260)
T TIGR00950       194 LLYLGLIGTALAYFLWNKGLTLVDPSAASILALAEPLVALLLGLLILGETLSLPQLIGGALIIAAV  259 (260)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhc
Confidence            45577664 678888899999999999999999999999999999999999999999999999886

>TIGR00776 RhaT RhaT L-rhamnose-proton symporter family protein

Probab=97.15  E-value=0.0066  Score=57.39  Aligned_cols=103  Identities=20%  Similarity=0.129  Sum_probs=83.2

Q ss_pred             hhHHHHHHHHHHHhhhccccccHHHHhcc-chHHHHHHHHHHHhcccccccc----cchhhheeeceeeEeecCCCCCC-
Q 021784          189 VGLLEALAAATGMAAGAILSGASIPILSQ-TFLVWQILLSIIFLGRRYRVNQ----LFGCFLVGIGVIITVASGSNPGH-  262 (307)
Q Consensus       189 ~GllDal~~~L~viA~~ytsgs~~~LL~q-~~IP~tmllS~ifLk~RY~~~q----i~G~~IVl~Glivvv~sgs~~g~-  262 (307)
                      -|++-+.+|++.+.|.+++..+....+.+ ....+..+++.+++|+|.+..+    ++|++++++|++++..++.++.+ 
T Consensus        65 ~G~~w~ig~~~~~~ai~~~gva~a~~i~~~~~~v~~~l~~~~~f~e~~t~~~~~~~~~g~~l~l~G~~l~~~~~~~~~~~  144 (290)
T TIGR00776        65 SGAFWALGQINQFKSMRYMGVSKTMPISTGFQLVGGTLFGVIVFGEWSTSIQTLLGLLALILIIIGVYLTSRSKDKSAGI  144 (290)
T ss_pred             HHHHHHhhhhhHHHHHHHHhHHHHhHHHHHHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHhHheEEecccccccc
Confidence            34558899999999999999999988888 6666899999999999999999    99999999999888766422111 


Q ss_pred             CCCCcchHHHHHHHHHhhHHHHHHHHHHH
Q 021784          263 SLKGAGIFWSLLMIVSFLLQAADTVLKEV  291 (307)
Q Consensus       263 s~~~~~vlw~lL~llS~ip~AlSnV~kE~  291 (307)
                      ....+...+.++-++|.+.+|...+.-+.
T Consensus       145 ~~~~~~~~Gi~~~l~sg~~y~~~~~~~~~  173 (290)
T TIGR00776       145 KSEFNFKKGILLLLMSTIGYLVYVVVAKA  173 (290)
T ss_pred             ccccchhhHHHHHHHHHHHHHHHHHHHHH
Confidence            00033366889999999999998888774

These proteins are members of the L-Rhamnose Symporter (RhaT) Family (TC 2.A.7). This family includes two characterized members, both of which function as L-rhamnose:H+ symporters and have 10 GES predicted transmembrane domains.

>PF03151 TPT: Triose-phosphate Transporter family; InterPro: IPR004853 This family consists entirely of aligned regions from Drosophila melanogaster proteins

Probab=96.99  E-value=0.0044  Score=51.71  Aligned_cols=69  Identities=26%  Similarity=0.359  Sum_probs=62.6

Q ss_pred             ccchHhhHHHHHHHHHHHhhhccccccHHHHhccchHHHHHHHHHHHhcccccccccchhhheeeceee
Q 021784          184 APFVAVGLLEALAAATGMAAGAILSGASIPILSQTFLVWQILLSIIFLGRRYRVNQLFGCFLVGIGVII  252 (307)
Q Consensus       184 ~kfli~GllDal~~~L~viA~~ytsgs~~~LL~q~~IP~tmllS~ifLk~RY~~~qi~G~~IVl~Gliv  252 (307)
                      ..+++.|++=..-|+..+....+|++...++++..-.+.+.++|+++++...+..|++|..++++|.++
T Consensus        82 ~~~~~~~~~~~~~n~~~f~~i~~tS~lt~~v~~~~K~~~~i~~s~~~f~~~~t~~~~~G~~l~~~G~~~  150 (153)
T PF03151_consen   82 FLLILSGLLAFLYNLSSFLLIKLTSPLTYSVLGNVKRILVILLSVIFFGEPITPLQIIGIVLALVGVLL  150 (153)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhhhcChhHHHHHHHHHHHHHHHHHhhhcCCcCCHHHHHHHHHHHHHHhe
Confidence            345567777888888899999999999999999999999999999999999999999999999999864

O49724 from SWISSPROT contains three repeats of this region. In other proteins, the aligned region is located towards the C terminus. The function of the aligned region is unknown.

>KOG1443 consensus Predicted integral membrane protein [Function unknown]

Probab=96.73  E-value=0.0089  Score=58.37  Aligned_cols=171  Identities=15%  Similarity=0.205  Sum_probs=120.8

Q ss_pred             HHHHHHHHHHhhhhhHHHHHHHhCCCCChhHHHHHHhhhhhHHHHHHHHHHHHhcCccchhhhcCCC----ccchHhhHH
Q 021784          117 IVIAAAVTVLLGVGNRVLYKLALVPLKHYPFFLAQLATFGYVAVYFSILYLRYHAGIVTDEMLSMPK----APFVAVGLL  192 (307)
Q Consensus       117 v~i~~i~~Vi~Gv~N~Vl~Kl~~~~~~nYp~Fl~q~~t~~yv~vyf~Il~~r~~~~~it~eml~~Pk----~kfli~Gll  192 (307)
                      .+.+++++-.+..+=+-.+|-... -.+||-|++.++..+-.  .|+.+..+-+....++.-..+.|    ++.+.-|++
T Consensus        17 ~L~lVl~yY~~Si~Ltf~~~~~~~-~f~fPLf~ts~h~~v~f--lfa~~~~~l~~~~~~r~r~~~sw~~~Lr~~aPtala   93 (349)
T KOG1443|consen   17 TLALVLLYYFLSIGLTFYFKWLTK-NFHFPLFVTSLHLAVKF--LFAALSRRLYQCSVPRARVVLSWRDYLRRLAPTALA   93 (349)
T ss_pred             HHHHHHHHHHHHHHHHHHhhhhhc-CcCCchHHHHHHHHHHH--HHHHHHHHHHhccCCccccCCcHHHHHHHhhhhhhh
Confidence            334446666666665666666444 37999999988764322  22333333222222222233444    233456666


Q ss_pred             HHHHHHHHHhhhccccccHHHHhccchHHHHHHHHHHHhcccccccccchhhheeeceeeEeecCCCCCCCCCCcchHHH
Q 021784          193 EALAAATGMAAGAILSGASIPILSQTFLVWQILLSIIFLGRRYRVNQLFGCFLVGIGVIITVASGSNPGHSLKGAGIFWS  272 (307)
Q Consensus       193 Dal~~~L~viA~~ytsgs~~~LL~q~~IP~tmllS~ifLk~RY~~~qi~G~~IVl~Glivvv~sgs~~g~s~~~~~vlw~  272 (307)
                      -+.---+...+..|++.+.+.|-.-++|.|.+++|.+|-=.|+++.=.+=++++.+|+++...-.+       +-.+.|-
T Consensus        94 ta~DIGLSN~sl~yVtlSlYTM~KSSsi~FIllFs~if~lEk~~w~L~l~v~lI~~Glflft~KsT-------qf~i~Gf  166 (349)
T KOG1443|consen   94 TALDIGLSNWSLEYVTLSLYTMTKSSSILFILLFSLIFKLEKFRWALVLIVLLIAVGLFLFTYKST-------QFNIEGF  166 (349)
T ss_pred             hhcccccccceeeeeeeeeeeeccccHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhheeEEEeccc-------ceeehhH
Confidence            777777899999999999999999999999999999998888888777777888888888776432       2346778


Q ss_pred             HHHHHHhhHHHHHHHHHHHhhhhhh
Q 021784          273 LLMIVSFLLQAADTVLKEVIFLDAA  297 (307)
Q Consensus       273 lL~llS~ip~AlSnV~kE~~fkd~~  297 (307)
                      .+++.+....++-=++-.++.+|..
T Consensus       167 ~lv~~aS~~sGlRW~~tQ~ll~~~~  191 (349)
T KOG1443|consen  167 FLVLAASLLSGLRWAFTQMLLRNQP  191 (349)
T ss_pred             HHHHHHHHhhhhhHHHHHHHHhcCc
Confidence            8999999999999999998888765

>KOG1580 consensus UDP-galactose transporter related protein [Carbohydrate transport and metabolism]

Probab=96.69  E-value=0.0018  Score=61.42  Aligned_cols=120  Identities=14%  Similarity=0.157  Sum_probs=90.0

Q ss_pred             hhcCCCccchHhhHHHHHHHHHHHhhhccccccHHHHhccchHHHHHHHHHHHhcccccccccchhhheeeceeeEeecC
Q 021784          178 MLSMPKAPFVAVGLLEALAAATGMAAGAILSGASIPILSQTFLVWQILLSIIFLGRRYRVNQLFGCFLVGIGVIITVASG  257 (307)
Q Consensus       178 ml~~Pk~kfli~GllDal~~~L~viA~~ytsgs~~~LL~q~~IP~tmllS~ifLk~RY~~~qi~G~~IVl~Glivvv~sg  257 (307)
                      ..+.|-|-|+.-++--.++-.-..-|.+|+|-+-+.+=-..--.=+|++-.+|+||.|++.+|.+++.+++|+++-..-.
T Consensus        80 ~D~t~~~~YaAcs~sYLlAMVssN~Alq~vpYPTqVlgKScKPIPVMilGVl~~~KsY~w~kY~cVL~IV~GValFmYK~  159 (337)
T KOG1580|consen   80 IDNTPTKMYAACSASYLLAMVSSNQALQYVPYPTQVLGKSCKPIPVMILGVLFAHKSYHWRKYCCVLMIVVGVALFMYKE  159 (337)
T ss_pred             ccCCcchHHHHHHHHHHHHHHhccchhcccCCcHHHhcccCCCcceeeeehhhhcccccHHHHHHHHHHHHHHHHhhccc
Confidence            34566677877666666666677778889998877665544444478999999999999999999999999998877642


Q ss_pred             CCCCCCCCCcchHHHHHHHHHhhHHHHHHHHHHHhhhhhh
Q 021784          258 SNPGHSLKGAGIFWSLLMIVSFLLQAADTVLKEVIFLDAA  297 (307)
Q Consensus       258 s~~g~s~~~~~vlw~lL~llS~ip~AlSnV~kE~~fkd~~  297 (307)
                      ..-++.....-.+|-+|.++|....++..+.||.+=..|+
T Consensus       160 ~Kv~g~e~~t~g~GElLL~lSL~mDGlTg~~Qdrira~yq  199 (337)
T KOG1580|consen  160 NKVGGAEDKTFGFGELLLILSLAMDGLTGSIQDRIRASYQ  199 (337)
T ss_pred             cccCCCcccccchHHHHHHHHHHhcccchhHHHHHHHhhc
Confidence            1111122244568899999999999999999999544443

>PF08449 UAA: UAA transporter family; InterPro: IPR013657 This family includes transporters with a specificity for UDP-N-acetylglucosamine []

Probab=96.67  E-value=0.0059  Score=57.68  Aligned_cols=136  Identities=18%  Similarity=0.166  Sum_probs=85.7

Q ss_pred             HHHHHHHHHHHhhhhhHHHHHHHhCCCCChhHHHHHHhhhhhHHHHHHHHHHHHhcCccc---hhhhcCCC--ccchHhh
Q 021784          116 EIVIAAAVTVLLGVGNRVLYKLALVPLKHYPFFLAQLATFGYVAVYFSILYLRYHAGIVT---DEMLSMPK--APFVAVG  190 (307)
Q Consensus       116 ~v~i~~i~~Vi~Gv~N~Vl~Kl~~~~~~nYp~Fl~q~~t~~yv~vyf~Il~~r~~~~~it---~eml~~Pk--~kfli~G  190 (307)
                      .++++.+.+++ +....+..+...++.+..++-+-..+++.-++..+.....-. .+...   +-...-|.  +..++..
T Consensus       155 G~~ll~~sl~~-~a~~~~~qe~~~~~~~~~~~~~mfy~n~~~~~~~~~~~~~l~-~~~~~~~~~f~~~~p~~~~~l~~~s  232 (303)
T PF08449_consen  155 GIILLLLSLLL-DAFTGVYQEKLFKKYGKSPWELMFYTNLFSLPFLLILLFLLP-TGEFRSAIRFISAHPSVLLYLLLFS  232 (303)
T ss_pred             HHHHHHHHHHH-HHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHHHH-hhHhhHHHHHHHHhHHHHHHHHHHH
Confidence            55555555544 555556666666666655543333333221122221111100 11000   00111222  3455677


Q ss_pred             HHHHHHHHHHHhhhccccccHHHHhccchHHHHHHHHHHHhcccccccccchhhheeeceeeE
Q 021784          191 LLEALAAATGMAAGAILSGASIPILSQTFLVWQILLSIIFLGRRYRVNQLFGCFLVGIGVIIT  253 (307)
Q Consensus       191 llDal~~~L~viA~~ytsgs~~~LL~q~~IP~tmllS~ifLk~RY~~~qi~G~~IVl~Glivv  253 (307)
                      ++-++++...+.-...++.....+....--++++++|.++.+++++..||+|++++++|+.+-
T Consensus       233 ~~~~~g~~~i~~~~~~~~al~~t~v~t~Rk~~sillS~~~f~~~~~~~~~~G~~lv~~g~~~~  295 (303)
T PF08449_consen  233 LTGALGQFFIFYLIKKFSALTTTIVTTLRKFLSILLSVIIFGHPLSPLQWIGIVLVFAGIFLY  295 (303)
T ss_pred             HHHHHHHHHHHHHHHhcCchhhhhHHHHHHHHHHHHHHHhcCCcCChHHHHHHHHhHHHHHHH
Confidence            888888888888778888888999999999999999999999999999999999999998653

; GO: 0055085 transmembrane transport

>TIGR00803 nst UDP-galactose transporter

Probab=96.56  E-value=0.0047  Score=55.51  Aligned_cols=108  Identities=18%  Similarity=0.066  Sum_probs=73.9

Q ss_pred             HhhHHHHHHHHHHHhhhccccccHHHHhccchHHHHHHHHHHHhcccccccccchhhheeeceeeEeecCCCCCCCCCCc
Q 021784          188 AVGLLEALAAATGMAAGAILSGASIPILSQTFLVWQILLSIIFLGRRYRVNQLFGCFLVGIGVIITVASGSNPGHSLKGA  267 (307)
Q Consensus       188 i~GllDal~~~L~viA~~ytsgs~~~LL~q~~IP~tmllS~ifLk~RY~~~qi~G~~IVl~Glivvv~sgs~~g~s~~~~  267 (307)
                      +++..=...+.+...+..+..+.-.+.. |.-+..+++++...+++|.+..|+.+......|+.++-...........++
T Consensus         4 vPa~~~~~s~~l~~v~l~~~~~~~~~~~-~~~i~~~~l~~~g~l~~~ls~~q~~al~~l~~~~~~~~~~~~~~~~~~~g~   82 (222)
T TIGR00803         4 VPIHIIFKQNNLVLIALGNLLAAGKQVT-QLKILSTALMTLGSLVASLGDDQWFSLKLLKLGVAIVQMVQSSAKTLMFGN   82 (222)
T ss_pred             ccchHHHHhcchHHHHHhcccccceeee-hHHHHHHHHHHHHHHHhHhhHHHHHHHHHHHHhHeeeecCCCCcccccccc
Confidence            3444455566666666666666666666 777888888888888888888888777666666655433221111112345


Q ss_pred             chHHHHHHHHHhhHHHHHHHHHHHhhhhh
Q 021784          268 GIFWSLLMIVSFLLQAADTVLKEVIFLDA  296 (307)
Q Consensus       268 ~vlw~lL~llS~ip~AlSnV~kE~~fkd~  296 (307)
                      .+.+...++.+++..++..+|+|+.+|++
T Consensus        83 ~~~g~~~~l~a~~~~~~~~~y~e~~~k~~  111 (222)
T TIGR00803        83 PVVGLSAVLSALLSSGFAGVYFEKILKDG  111 (222)
T ss_pred             HHHHHHHHHHHHHHHhhhHHHHHHcccCC
Confidence            66777778888999999999999998875

NSTs generally appear to function by antiport mechanisms, exchanging a nucleotide-sugar for a nucleotide. Thus, CMP-sialic acid is exchanged for CMP; GDP-mannose is preferentially exchanged for GMP, and UDP-galactose and UDP-N-acetylglucosamine are exchanged for UMP (or possibly UDP). Other nucleotide sugars (e.g., GDP-fucose, UDP-xylose, UDP-glucose, UDP-N-acetylgalactosamine, etc.) may also be transported in exchange for various nucleotides, but their transporters have not been molecularly characterized. Each compound appears to be translocated by its own transport protein. Transport allows the compound, synthesized in the cytoplasm, to be exported to the lumen of the Golgi apparatus or the endoplasmic reticulum where it is used for the synthesis of glycoproteins and glycolipids.

>TIGR03340 phn_DUF6 phosphonate utilization associated putative membrane protein

Probab=96.38  E-value=0.0056  Score=56.93  Aligned_cols=64  Identities=28%  Similarity=0.413  Sum_probs=59.1

Q ss_pred             hhHHHHHHHHHHHhhhccccccHHHHhccchHHHHHHHHHHHhcccccccccchhhheeeceee
Q 021784          189 VGLLEALAAATGMAAGAILSGASIPILSQTFLVWQILLSIIFLGRRYRVNQLFGCFLVGIGVII  252 (307)
Q Consensus       189 ~GllDal~~~L~viA~~ytsgs~~~LL~q~~IP~tmllS~ifLk~RY~~~qi~G~~IVl~Gliv  252 (307)
                      .+++..++..+.+.+.++.+.+....+.+...++..++++++++++.+..|++|+.++++|+.+
T Consensus       217 ~~~~s~l~~~l~~~al~~~~a~~~~~~~~l~pv~a~l~g~~~lgE~~~~~~~iG~~lil~Gv~l  280 (281)
T TIGR03340       217 GGLMIGGAYALVLWAMTRLPVATVVALRNTSIVFAVVLGIWFLNERWYLTRLMGVCIIVAGLVV  280 (281)
T ss_pred             HHHHHHHHHHHHHHHHhhCCceEEEeecccHHHHHHHHHHHHhCCCccHHHHHHHHHHHHhHHh
Confidence            4466888889999999999999999999999999999999999999999999999999999865

This family of hydrophobic proteins has some homology to families of integral membrane proteins such as (pfam00892) and may be a permease. It occurs in the vicinity of various types of operons for the catabolism of phosphonates in Vibrio, Pseudomonas, Polaromonas and Thiomicrospira.

>KOG1442 consensus GDP-fucose transporter [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]

Probab=95.96  E-value=0.038  Score=53.56  Aligned_cols=84  Identities=15%  Similarity=0.159  Sum_probs=71.5

Q ss_pred             hccccccHHHHhccchHHHHHHHHHHHhcccccccccchhhheeeceeeEeecCCCCCCCCCCcchHHHHHHHHHhhHHH
Q 021784          204 GAILSGASIPILSQTFLVWQILLSIIFLGRRYRVNQLFGCFLVGIGVIITVASGSNPGHSLKGAGIFWSLLMIVSFLLQA  283 (307)
Q Consensus       204 ~~ytsgs~~~LL~q~~IP~tmllS~ifLk~RY~~~qi~G~~IVl~Glivvv~sgs~~g~s~~~~~vlw~lL~llS~ip~A  283 (307)
                      +.|.+.+-.++=+....||+.++++.+||.|=+..-+.||.++++|..+    |.+.+++.+.-.+.|.++-++|++.-|
T Consensus       123 L~yVgVaFYyvgRsLttvFtVlLtyvllkqkTs~~~~~~C~lIi~GF~l----GvdqE~~~~~ls~~GvifGVlaSl~vA  198 (347)
T KOG1442|consen  123 LKYVGVAFYYVGRSLTTVFTVLLTYVLLKQKTSFFALGCCLLIILGFGL----GVDQEGSTGTLSWIGVIFGVLASLAVA  198 (347)
T ss_pred             hhhcceEEEEeccchhhhHHHHhHHhhcccccccccceeehhheehhee----ccccccccCccchhhhHHHHHHHHHHH
Confidence            4688888889999999999999999999999999999999999999877    555544556677889999999999999


Q ss_pred             HHHHHHHH
Q 021784          284 ADTVLKEV  291 (307)
Q Consensus       284 lSnV~kE~  291 (307)
                      +-.++-.+
T Consensus       199 lnaiytkk  206 (347)
T KOG1442|consen  199 LNAIYTKK  206 (347)
T ss_pred             HHHHhhhe
Confidence            88877553

>PRK15051 4-amino-4-deoxy-L-arabinose-phosphoundecaprenol flippase subunit ArnE; Provisional

Probab=95.93  E-value=0.0086  Score=49.51  Aligned_cols=64  Identities=13%  Similarity=0.048  Sum_probs=55.1

Q ss_pred             HHHHHHHHHHHhhhccccccHHHHhccchHHHHHHHHHHHhcccccccccchhhheeeceeeEe
Q 021784          191 LLEALAAATGMAAGAILSGASIPILSQTFLVWQILLSIIFLGRRYRVNQLFGCFLVGIGVIITV  254 (307)
Q Consensus       191 llDal~~~L~viA~~ytsgs~~~LL~q~~IP~tmllS~ifLk~RY~~~qi~G~~IVl~Glivvv  254 (307)
                      ++-..+.++...+....|.+....+-+....++++++++++|.|.+..|++|..++++|+++..
T Consensus        45 ~~~~l~~~~~~~al~~iplg~Ay~~~~l~~v~~~~~~~l~f~E~ls~~~~~Gi~lii~Gv~~i~  108 (111)
T PRK15051         45 ACLGLAMVLWLLVLQNVPVGIAYPMLSLNFVWVTLAAVKLWHEPVSPRHWCGVAFIIGGIVILG  108 (111)
T ss_pred             HHHHHHHHHHHHHHhhCChHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHh
Confidence            4456677788888888888887766679999999999999999999999999999999987653

>KOG2922 consensus Uncharacterized conserved protein [Function unknown]

Probab=95.82  E-value=0.016  Score=56.66  Aligned_cols=71  Identities=20%  Similarity=0.313  Sum_probs=62.8

Q ss_pred             hHhhHH-HHHHHHHHHhhhccccccHHHHhccchHHHHHHHHHHHhcccccccccchhhheeeceeeEeecC
Q 021784          187 VAVGLL-EALAAATGMAAGAILSGASIPILSQTFLVWQILLSIIFLGRRYRVNQLFGCFLVGIGVIITVASG  257 (307)
Q Consensus       187 li~Gll-Dal~~~L~viA~~ytsgs~~~LL~q~~IP~tmllS~ifLk~RY~~~qi~G~~IVl~Glivvv~sg  257 (307)
                      .+.|++ =.+|.+.-+.||++-|.++..-|....++.+.+++.+|||+|.+..-.+||++|++|-.+.+.-.
T Consensus        67 Ww~G~ltm~vGei~NFaAYaFAPasLVtPLGAlsvi~saila~~~L~Ekl~~~g~lGc~l~v~Gst~iV~ha  138 (335)
T KOG2922|consen   67 WWAGMLTMIVGEIANFAAYAFAPASLVTPLGALSVIISAILASFFLKEKLNLLGILGCVLCVVGSTTIVIHA  138 (335)
T ss_pred             HHHHHHHHHHHhHhhHHHHhhchHhhhccchhHHHHHHHHHHHHHHHHHHHHhhhhheeEEecccEEEEEec
Confidence            334533 45688889999999999999999999999999999999999999999999999999998887743

>KOG1444 consensus Nucleotide-sugar transporter VRG4/SQV-7 [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]

Probab=95.81  E-value=0.089  Score=51.38  Aligned_cols=171  Identities=19%  Similarity=0.218  Sum_probs=115.2

Q ss_pred             cchHHHHHHHHHHHhhhhhHHHHHHHhCCCCChhHHHHH--HhhhhhHHHHHHHHHHHHhcCccchhhhcCCC-ccchHh
Q 021784          113 RRVEIVIAAAVTVLLGVGNRVLYKLALVPLKHYPFFLAQ--LATFGYVAVYFSILYLRYHAGIVTDEMLSMPK-APFVAV  189 (307)
Q Consensus       113 ~~~~v~i~~i~~Vi~Gv~N~Vl~Kl~~~~~~nYp~Fl~q--~~t~~yv~vyf~Il~~r~~~~~it~eml~~Pk-~kfli~  189 (307)
                      ...+-++..+.|.+....-++.-|.... -.+||.++.-  .|++..+++-    +.-.+.|-+.-|.++... ||++.+
T Consensus         9 ~~~~~l~sa~~Y~~sS~lm~vvNK~vls-~y~f~~~l~l~~~Q~l~s~~~v----~~lk~~~lv~~~~l~~~~~kk~~P~   83 (314)
T KOG1444|consen    9 KQSSPLLSALFYCLSSILMTVVNKIVLS-SYNFPMGLLLMLLQSLASVLVV----LVLKRLGLVNFRPLDLRTAKKWFPV   83 (314)
T ss_pred             hhhhhhHHHHHHHHHHHHHHHHHHHHHh-cCCCcHHHHHHHHHHHHHHHHH----HHHHHhceeecCCcChHHHHHHccH
Confidence            3344466778888888888999998776 2355555444  4554444322    121223333333222111 566778


Q ss_pred             hHHHHHHHHHHHhhhccccccHHHHhccchHHHHHHHHHHHhcccccccccchhhheeeceeeEeecCCCCCCCCCCcch
Q 021784          190 GLLEALAAATGMAAGAILSGASIPILSQTFLVWQILLSIIFLGRRYRVNQLFGCFLVGIGVIITVASGSNPGHSLKGAGI  269 (307)
Q Consensus       190 GllDal~~~L~viA~~ytsgs~~~LL~q~~IP~tmllS~ifLk~RY~~~qi~G~~IVl~Glivvv~sgs~~g~s~~~~~v  269 (307)
                      .++=...-+....+.+|.+.++..++...++..+++.=..|+|+|.+..-+..++..++|-.....++..    ....+.
T Consensus        84 ~~lf~~~i~t~~~slk~lnVpm~tv~kn~tii~~ai~E~lf~~~~~~~~v~~Sv~~m~~~s~~~~~~d~s----f~~~gY  159 (314)
T KOG1444|consen   84 SLLFVGMLFTGSKSLKYLNVPMFTVFKNLTIILTAIGEVLFFGKRPSNKVWASVFAMIIGSVAAAFTDLS----FNLRGY  159 (314)
T ss_pred             HHHHHHHHHHccccccccCchHHHHHhhchHHHHHHhHHhhcCcCchhhHHHHHHHHHHHHHhhccccce----ecchhH
Confidence            8888888899999999999999999999999999999999999999999888888888877766655421    222234


Q ss_pred             HHHHHHHHHhhHHHHHHHHHHHhhhh
Q 021784          270 FWSLLMIVSFLLQAADTVLKEVIFLD  295 (307)
Q Consensus       270 lw~lL~llS~ip~AlSnV~kE~~fkd  295 (307)
                      .|.+   +.++..|.-.++-++..+.
T Consensus       160 ~w~~---~n~~~~a~~~v~~kk~vd~  182 (314)
T KOG1444|consen  160 SWAL---ANCLTTAAFVVYVKKSVDS  182 (314)
T ss_pred             HHHH---HHHHHHHHHHHHHHHhhcc
Confidence            5544   4555556666666655443

>PRK10532 threonine and homoserine efflux system; Provisional

Probab=95.75  E-value=0.053  Score=50.92  Aligned_cols=70  Identities=20%  Similarity=0.157  Sum_probs=61.3

Q ss_pred             hHhhHHH-HHHHHHHHhhhccccccHHHHhccchHHHHHHHHHHHhcccccccccchhhheeeceeeEeec
Q 021784          187 VAVGLLE-ALAAATGMAAGAILSGASIPILSQTFLVWQILLSIIFLGRRYRVNQLFGCFLVGIGVIITVAS  256 (307)
Q Consensus       187 li~GllD-al~~~L~viA~~ytsgs~~~LL~q~~IP~tmllS~ifLk~RY~~~qi~G~~IVl~Glivvv~s  256 (307)
                      +.+|++- +.+..+.+.+.++++.+...++.....++.+++++++++.+.+..|++|+.++++|++.....
T Consensus       212 l~lgv~~t~~~~~l~~~~~~~~~a~~as~~~~l~Pv~a~l~~~l~lgE~~~~~~~iG~~lIl~~~~~~~~~  282 (293)
T PRK10532        212 LAVAILSTALPYSLEMIALTRLPTRTFGTLMSMEPALAAVSGMIFLGETLTLIQWLALGAIIAASMGSTLT  282 (293)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhcChhHHHHHHHhHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHHHhc
Confidence            4577664 455557799999999999999999999999999999999999999999999999988776544

>PRK11689 aromatic amino acid exporter; Provisional

Probab=95.60  E-value=0.031  Score=52.52  Aligned_cols=71  Identities=11%  Similarity=0.005  Sum_probs=63.1

Q ss_pred             chHhhHHHHHHHHHHHhhhccccccHHHHhccchHHHHHHHHHHHhcccccccccchhhheeeceeeEeec
Q 021784          186 FVAVGLLEALAAATGMAAGAILSGASIPILSQTFLVWQILLSIIFLGRRYRVNQLFGCFLVGIGVIITVAS  256 (307)
Q Consensus       186 fli~GllDal~~~L~viA~~ytsgs~~~LL~q~~IP~tmllS~ifLk~RY~~~qi~G~~IVl~Glivvv~s  256 (307)
                      .+..|+.-.++.++.+.+.++++.+...++.-...++.+++++++|+++.+..|++|++++++|+.+....
T Consensus       218 l~~~~~~t~~~~~l~~~al~~~~a~~~s~~~~l~Pv~a~i~~~~~lgE~~~~~~~iG~~lI~~gv~~~~~~  288 (295)
T PRK11689        218 LLLAAAAMGFGYAAWNVGILHGNMTLLATASYFTPVLSAALAALLLSTPLSFSFWQGVAMVTAGSLLCWLA  288 (295)
T ss_pred             HHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHhHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHhHHHHhhh
Confidence            34466667778888999999999999999999999999999999999999999999999999998776544

>PLN00411 nodulin MtN21 family protein; Provisional

Probab=95.27  E-value=0.057  Score=53.12  Aligned_cols=68  Identities=12%  Similarity=0.188  Sum_probs=58.8

Q ss_pred             hhHHHHHHHHHHHhhhccccccHHHHhccchHHHHHHHHHHHhcccccccccchhhheeeceeeEeec
Q 021784          189 VGLLEALAAATGMAAGAILSGASIPILSQTFLVWQILLSIIFLGRRYRVNQLFGCFLVGIGVIITVAS  256 (307)
Q Consensus       189 ~GllDal~~~L~viA~~ytsgs~~~LL~q~~IP~tmllS~ifLk~RY~~~qi~G~~IVl~Glivvv~s  256 (307)
                      .|+.-.++-.+.+.+..+.+++-..+......++++++++++|+.+.+..|++|++++++|+.++..+
T Consensus       262 ~~i~t~lay~lw~~~v~~~ga~~as~~~~L~PV~a~llg~l~LgE~lt~~~~iG~~LIl~Gv~l~~~~  329 (358)
T PLN00411        262 MAIITSVYYVIHSWTVRHKGPLYLAIFKPLSILIAVVMGAIFLNDSLYLGCLIGGILITLGFYAVMWG  329 (358)
T ss_pred             HHHHHHHHHHHHHHHHhccCchHHHHHHhHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHHHhh
Confidence            44444556666777888999999999999999999999999999999999999999999999887654

>COG0697 RhaT Permeases of the drug/metabolite transporter (DMT) superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / General function prediction only]

Probab=95.18  E-value=0.08  Score=47.43  Aligned_cols=70  Identities=27%  Similarity=0.385  Sum_probs=62.2

Q ss_pred             cchHhhHHHH-HHHHHHHhhhccccccHHHHhccchHHHHHHHHHHHhcccccccccchhhheeeceeeEe
Q 021784          185 PFVAVGLLEA-LAAATGMAAGAILSGASIPILSQTFLVWQILLSIIFLGRRYRVNQLFGCFLVGIGVIITV  254 (307)
Q Consensus       185 kfli~GllDa-l~~~L~viA~~ytsgs~~~LL~q~~IP~tmllS~ifLk~RY~~~qi~G~~IVl~Glivvv  254 (307)
                      .....|++-. ++.++...+....+.....++....+++.+++++++++++.+..|++|+++++.|+.+..
T Consensus       216 ~~~~~g~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~l~~~e~~~~~~~~G~~li~~g~~l~~  286 (292)
T COG0697         216 LLLYLGVFSTGLAYLLWYYALRLLGASLVALLSLLEPVFAALLGVLLLGEPLSPAQLLGAALVVLGVLLAS  286 (292)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHHh
Confidence            4566777777 699999999999999999999988899999999999999999999999999999887644

>TIGR00803 nst UDP-galactose transporter

Probab=94.90  E-value=0.13  Score=46.28  Aligned_cols=67  Identities=13%  Similarity=0.155  Sum_probs=60.7

Q ss_pred             chHhhHHHHHHHHHHHhhhccccccHHHHhccchHHHHHHHHHHHhcccccccccchhhheeeceee
Q 021784          186 FVAVGLLEALAAATGMAAGAILSGASIPILSQTFLVWQILLSIIFLGRRYRVNQLFGCFLVGIGVII  252 (307)
Q Consensus       186 fli~GllDal~~~L~viA~~ytsgs~~~LL~q~~IP~tmllS~ifLk~RY~~~qi~G~~IVl~Gliv  252 (307)
                      ...+.++-+.++.+......|.+.....+....-+.++.++|+++.+...+..|++|+.+|+.|+.+
T Consensus       155 ~~~~~~~~a~~~~~v~~vlk~~~~~~~~~~~~~~~~~s~lls~~~f~~~ls~~~~~g~~lV~~~~~l  221 (222)
T TIGR00803       155 VWIVGLLNVGGGLCIGGVVRYADNTTKSFVTALSIILSTLASVRLFDAKISSTFYLGAILVFLATFL  221 (222)
T ss_pred             HHHHHHHHHhcCceeeehhHHhHHHHHHHHHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHeeeEe
Confidence            4456677888889988888999999999999999999999999999999999999999999999865

NSTs generally appear to function by antiport mechanisms, exchanging a nucleotide-sugar for a nucleotide. Thus, CMP-sialic acid is exchanged for CMP; GDP-mannose is preferentially exchanged for GMP, and UDP-galactose and UDP-N-acetylglucosamine are exchanged for UMP (or possibly UDP). Other nucleotide sugars (e.g., GDP-fucose, UDP-xylose, UDP-glucose, UDP-N-acetylgalactosamine, etc.) may also be transported in exchange for various nucleotides, but their transporters have not been molecularly characterized. Each compound appears to be translocated by its own transport protein. Transport allows the compound, synthesized in the cytoplasm, to be exported to the lumen of the Golgi apparatus or the endoplasmic reticulum where it is used for the synthesis of glycoproteins and glycolipids.

>PTZ00343 triose or hexose phosphate/phosphate translocator; Provisional

Probab=94.67  E-value=0.12  Score=50.21  Aligned_cols=63  Identities=11%  Similarity=0.082  Sum_probs=53.1

Q ss_pred             hHHHHHHHHH----HHhhhccccccHHHHhccchHHHHHHHHHHHhcccccccccchhhheeeceee
Q 021784          190 GLLEALAAAT----GMAAGAILSGASIPILSQTFLVWQILLSIIFLGRRYRVNQLFGCFLVGIGVII  252 (307)
Q Consensus       190 GllDal~~~L----~viA~~ytsgs~~~LL~q~~IP~tmllS~ifLk~RY~~~qi~G~~IVl~Gliv  252 (307)
                      .++-.+..++    .+.+..++++....+.+..--++++++++++++...+..|++|++++++|+++
T Consensus       279 i~~s~l~~~l~n~~~f~~l~~~s~~t~sv~~~lk~V~~iv~s~l~~ge~lt~~~~iG~~lii~Gv~l  345 (350)
T PTZ00343        279 IFFSGVWYYLYNEVAFYCLGKVNQVTHAVANTLKRVVIIVSSIIIFQTQVTLLGYLGMAVAILGALL  345 (350)
T ss_pred             HHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHhhhhHHHhCCCCchHhHHHHHHHHHHHHH
Confidence            3334444444    44588899999999999999999999999999999999999999999999864

>PRK02971 4-amino-4-deoxy-L-arabinose-phosphoundecaprenol flippase subunit ArnF; Provisional

Probab=94.33  E-value=0.17  Score=43.12  Aligned_cols=116  Identities=15%  Similarity=0.115  Sum_probs=70.7

Q ss_pred             HHHHHHHHhhhhhHHHHHHHhCCCCChhHHHHHHhhhhhHHHHHHHHHHHHhcCccchhhhcCCCccchHhh-HHHHHHH
Q 021784          119 IAAAVTVLLGVGNRVLYKLALVPLKHYPFFLAQLATFGYVAVYFSILYLRYHAGIVTDEMLSMPKAPFVAVG-LLEALAA  197 (307)
Q Consensus       119 i~~i~~Vi~Gv~N~Vl~Kl~~~~~~nYp~Fl~q~~t~~yv~vyf~Il~~r~~~~~it~eml~~Pk~kfli~G-llDal~~  197 (307)
                      +++++-+++++.-.++.|.-.+++++-+.....+. ....          ..          -| ..+++.| .+-+++-
T Consensus         5 ~~i~~sv~l~~~gQl~~K~g~~~~g~~~~~~~~~~-~~~~----------~~----------~p-~~~i~lgl~~~~la~   62 (129)
T PRK02971          5 LWGLASVLLASVAQLSLKWGMSRLPLLSHAWDFIA-ALLA----------FG----------LA-LRAVLLGLAGYALSM   62 (129)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhhCCCccchhHHHH-HHHH----------Hh----------cc-HHHHHHHHHHHHHHH
Confidence            45666677788889999999887765432221100 0000          00          00 0123333 3345555


Q ss_pred             HHHHhhhccccccHHHHhccchHHHHHHHHHH--HhcccccccccchhhheeeceeeEeec
Q 021784          198 ATGMAAGAILSGASIPILSQTFLVWQILLSII--FLGRRYRVNQLFGCFLVGIGVIITVAS  256 (307)
Q Consensus       198 ~L~viA~~ytsgs~~~LL~q~~IP~tmllS~i--fLk~RY~~~qi~G~~IVl~Glivvv~s  256 (307)
                      ++-..+....|.+...-+......+++++++.  +++.+.+..|++|+.++++|++++..+
T Consensus        63 ~~w~~aL~~~~ls~Ayp~~sl~~~~v~~~~~~~~~~~E~ls~~~~iGi~lIi~GV~lv~~~  123 (129)
T PRK02971         63 LCWLKALRYLPLSRAYPLLSLSYALVYLAAMLLPWFNETFSLKKTLGVACIMLGVWLINLP  123 (129)
T ss_pred             HHHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHhccC
Confidence            56666666666665544433444566667764  899999999999999999999886543

>KOG4314 consensus Predicted carbohydrate/phosphate translocator [General function prediction only]

Probab=94.30  E-value=0.13  Score=48.12  Aligned_cols=93  Identities=17%  Similarity=0.161  Sum_probs=78.5

Q ss_pred             HHHHHHHHhhhccccccHHHHhccchHHHHHHHHHHHhcccccccccchhhheeeceeeEeecCCCCCCCCCCcchHHHH
Q 021784          194 ALAAATGMAAGAILSGASIPILSQTFLVWQILLSIIFLGRRYRVNQLFGCFLVGIGVIITVASGSNPGHSLKGAGIFWSL  273 (307)
Q Consensus       194 al~~~L~viA~~ytsgs~~~LL~q~~IP~tmllS~ifLk~RY~~~qi~G~~IVl~Glivvv~sgs~~g~s~~~~~vlw~l  273 (307)
                      ..+||+-..|+.-.+++...-+.+..-.|+-+++++.||.|+...+++.+++.+.|+++....|..     -..++++..
T Consensus        64 t~aNY~Yl~AL~~is~s~asai~~CNaAFVfiLa~IVL~D~~~~~kIlaailAI~GiVmiay~DN~-----~a~e~iGi~  138 (290)
T KOG4314|consen   64 TGANYLYLLALKKISASDASAIFACNAAFVFILAIIVLGDRFMGFKILAAILAIGGIVMIAYADNE-----HADEIIGIA  138 (290)
T ss_pred             ecCCcHHHHHHHhcChhhhHHHHHhhHHHHHHHHHHHhccchhhhhHHHHHHHhCcEEEEEeccch-----hhhhhhhHH
Confidence            348999999999999999999999999999999999999999999999999999999988766421     135788888


Q ss_pred             HHHHHhhHHHHHHHHHHH
Q 021784          274 LMIVSFLLQAADTVLKEV  291 (307)
Q Consensus       274 L~llS~ip~AlSnV~kE~  291 (307)
                      ..+.|+...|+--|.=..
T Consensus       139 ~AV~SA~~aAlYKV~FK~  156 (290)
T KOG4314|consen  139 CAVGSAFMAALYKVLFKM  156 (290)
T ss_pred             HHHHHHHHHHHHHHHHHH
Confidence            888888887776555433

>PRK15430 putative chloramphenical resistance permease RarD; Provisional

Probab=94.21  E-value=0.019  Score=54.01  Aligned_cols=72  Identities=15%  Similarity=0.233  Sum_probs=64.8

Q ss_pred             chHhhHHHHHHHHHHHhhhccccccHHHHhccchHHHHHHHHHHHhcccccccccchhhheeeceeeEeecC
Q 021784          186 FVAVGLLEALAAATGMAAGAILSGASIPILSQTFLVWQILLSIIFLGRRYRVNQLFGCFLVGIGVIITVASG  257 (307)
Q Consensus       186 fli~GllDal~~~L~viA~~ytsgs~~~LL~q~~IP~tmllS~ifLk~RY~~~qi~G~~IVl~Glivvv~sg  257 (307)
                      ++..|..-+.+..+.+.|+++.+.+...++.-...++..++++++++.+.+..|++|+.++++|+.+...++
T Consensus       216 ~~~~g~~t~i~~~~~~~a~~~~~a~~~s~~~~l~Pv~a~~~g~l~l~E~~~~~~~~G~~lI~~~~~v~~~~~  287 (296)
T PRK15430        216 LIAAGIVTTVPLLCFTAAATRLRLSTLGFFQYIGPTLMFLLAVTFYGEKPGADKMVTFAFIWVALAIFVMDA  287 (296)
T ss_pred             HHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence            334577788999999999999999999999999999999999999999999999999999998888766553

>TIGR00776 RhaT RhaT L-rhamnose-proton symporter family protein

Probab=93.73  E-value=0.046  Score=51.69  Aligned_cols=72  Identities=19%  Similarity=0.140  Sum_probs=65.2

Q ss_pred             ccchHhhHHHHHHHHHHHhhhc-cccccHHHHhccchHHHHHHHHHHHhccccccccc----chhhheeeceeeEee
Q 021784          184 APFVAVGLLEALAAATGMAAGA-ILSGASIPILSQTFLVWQILLSIIFLGRRYRVNQL----FGCFLVGIGVIITVA  255 (307)
Q Consensus       184 ~kfli~GllDal~~~L~viA~~-ytsgs~~~LL~q~~IP~tmllS~ifLk~RY~~~qi----~G~~IVl~Glivvv~  255 (307)
                      |+-++.|++-..++.+.+.+.+ +.+.+...++.|.-.+...+++++++|++.+..|+    +|+++++.|+++...
T Consensus       212 ~~~~~~Gi~~~ia~~~y~~~~~~~~~~~~~~~ls~~~pvia~~~~v~~l~E~~~~~~~~~~~iG~~lIi~~~~l~~~  288 (290)
T TIGR00776       212 LLNILPGLMWGIGNFFYLFSAQPKVGVATSFSLSQLGVIISTLGGILILGEKKTKREMIAISVGIILIIIAANILGI  288 (290)
T ss_pred             HHHHHHHHHHHHHHHHHHHHcccccchhhHHHHHHHHHHHHHHHHHHHhccCCCcceeehhHHHHHHHHHHHHHHhc
Confidence            4566689888999999999999 99999999999999999999999999999999999    999999999877643

These proteins are members of the L-Rhamnose Symporter (RhaT) Family (TC 2.A.7). This family includes two characterized members, both of which function as L-rhamnose:H+ symporters and have 10 GES predicted transmembrane domains.

>PF10639 UPF0546: Uncharacterised protein family UPF0546; InterPro: IPR018908 This family of proteins has no known function

Probab=93.59  E-value=0.079  Score=44.65  Aligned_cols=71  Identities=15%  Similarity=0.109  Sum_probs=63.2

Q ss_pred             ccchHhhHHHHHHHHHHHhhhccccccHH-HHhccchHHHHHHHHHHHhcccccccccchhhheeeceeeEe
Q 021784          184 APFVAVGLLEALAAATGMAAGAILSGASI-PILSQTFLVWQILLSIIFLGRRYRVNQLFGCFLVGIGVIITV  254 (307)
Q Consensus       184 ~kfli~GllDal~~~L~viA~~ytsgs~~-~LL~q~~IP~tmllS~ifLk~RY~~~qi~G~~IVl~Glivvv  254 (307)
                      |+|+++=++..+|.++-+.....++.++. ++-|.....+|.+..+++-++.-+...++|+.+++.|+.+++
T Consensus        42 ~~y~ipf~lNq~GSv~f~~~L~~~dlSlavPi~Nsl~fvfT~l~g~~lge~~~~~~~~~G~~Li~~Gv~Lcv  113 (113)
T PF10639_consen   42 PKYIIPFLLNQSGSVLFFLLLGSADLSLAVPIANSLAFVFTALTGWLLGEEVISRRTWLGMALILAGVALCV  113 (113)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhcCCceeeehHHhHHHHHHHHHHHHHhcCcccchhHHHHHHHHHcCeeeeC
Confidence            68999889999999999999999999986 566899999999999887777778888999999999998863

Many members are annotated as potential transmembrane proteins.

>PRK11272 putative DMT superfamily transporter inner membrane protein; Provisional

Probab=93.32  E-value=0.058  Score=50.56  Aligned_cols=68  Identities=12%  Similarity=0.026  Sum_probs=59.7

Q ss_pred             chHhhHH-HHHHHHHHHhhhccccccHHHHhccchHHHHHHHHHHHhcccccccccchhhheeeceeeE
Q 021784          186 FVAVGLL-EALAAATGMAAGAILSGASIPILSQTFLVWQILLSIIFLGRRYRVNQLFGCFLVGIGVIIT  253 (307)
Q Consensus       186 fli~Gll-Dal~~~L~viA~~ytsgs~~~LL~q~~IP~tmllS~ifLk~RY~~~qi~G~~IVl~Glivv  253 (307)
                      .+.+|++ -+.+..+.+.+.++.+.+...++.....++.+++++++++++.+..|++|+++++.|+++.
T Consensus       215 i~~l~i~~s~~~~~l~~~~~~~~~~~~~s~~~~l~Pi~a~i~~~~~l~E~~t~~~iiG~~lIi~gv~~~  283 (292)
T PRK11272        215 LGYLAVFGSIIAISAYMYLLRNVRPALATSYAYVNPVVAVLLGTGLGGETLSPIEWLALGVIVFAVVLV  283 (292)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHHHH
Confidence            3445554 5677778888999999999999999999999999999999999999999999999998764

>TIGR00817 tpt Tpt phosphate/phosphoenolpyruvate translocator

Probab=92.67  E-value=0.19  Score=47.07  Aligned_cols=57  Identities=21%  Similarity=0.227  Sum_probs=50.1

Q ss_pred             HHHHhhhccccccHHHHhccchHHHHHHHHHHHhcccccccccchhhheeeceeeEe
Q 021784          198 ATGMAAGAILSGASIPILSQTFLVWQILLSIIFLGRRYRVNQLFGCFLVGIGVIITV  254 (307)
Q Consensus       198 ~L~viA~~ytsgs~~~LL~q~~IP~tmllS~ifLk~RY~~~qi~G~~IVl~Glivvv  254 (307)
                      .+.+.+..++++....++...--++++++++++++++.+..|++|..++++|+.+.-
T Consensus       236 ~~~~~~l~~~sa~t~sv~~~l~pv~~~~~~~~~lge~lt~~~~~G~~lil~Gv~l~~  292 (302)
T TIGR00817       236 QVAFMLLGRVSPLTHSVGNCMKRVVVIVVSILFFGTKISPQQVFGTGIAIAGVFLYS  292 (302)
T ss_pred             HHHHHHHccCCchHHHHHhhhhhhheeeeehhhcCCCCchhHHHHHHHHHHHHHHHH
Confidence            455567889999999999888888888999999999999999999999999987644

specificities overlap.

>PRK10452 multidrug efflux system protein MdtJ; Provisional

Probab=92.40  E-value=0.1  Score=44.20  Aligned_cols=73  Identities=10%  Similarity=0.139  Sum_probs=59.8

Q ss_pred             ccchHhhHHHHHHHHHHHhhhccccccH-HHHhccchHHHHHHHHHHHhcccccccccchhhheeeceeeEeec
Q 021784          184 APFVAVGLLEALAAATGMAAGAILSGAS-IPILSQTFLVWQILLSIIFLGRRYRVNQLFGCFLVGIGVIITVAS  256 (307)
Q Consensus       184 ~kfli~GllDal~~~L~viA~~ytsgs~-~~LL~q~~IP~tmllS~ifLk~RY~~~qi~G~~IVl~Glivvv~s  256 (307)
                      +++++.-.+=+++-++...+..+.|.+. +.+....-+..+.+++++|++.+.+..|++|..++++|+++.-..
T Consensus        31 ~~~~~~i~~~~~sf~~ls~al~~lplsiAYavw~GiG~v~~~~ig~~~f~E~~s~~~~~gi~lIi~GVi~l~l~  104 (120)
T PRK10452         31 GGFILMLVMISLSYIFLSFAVKKIALGVAYALWEGIGILFITLFSVLLFDESLSLMKIAGLTTLVAGIVLIKSG  104 (120)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhhcC
Confidence            3455566666777777778888888776 466678889999999999999999999999999999999877554

>PRK11453 O-acetylserine/cysteine export protein; Provisional

Probab=91.62  E-value=0.9  Score=42.69  Aligned_cols=71  Identities=15%  Similarity=0.128  Sum_probs=57.6

Q ss_pred             chHhhHH-HHHHHHHHHhhhccccccHHHHhccchHHHHHHHHHHHhcccccccccchhhheeeceeeEeec
Q 021784          186 FVAVGLL-EALAAATGMAAGAILSGASIPILSQTFLVWQILLSIIFLGRRYRVNQLFGCFLVGIGVIITVAS  256 (307)
Q Consensus       186 fli~Gll-Dal~~~L~viA~~ytsgs~~~LL~q~~IP~tmllS~ifLk~RY~~~qi~G~~IVl~Glivvv~s  256 (307)
                      .+.+|++ -+.+-.+.+.+.++.++....++.....++.+++++++|+.+.+..|++|+.++++|+.+...+
T Consensus       217 l~~l~i~~t~~~~~l~~~~l~~~~a~~~s~~~~l~Pv~a~~~~~l~lgE~~~~~~~iG~~lI~~gv~l~~~~  288 (299)
T PRK11453        217 LMYLAFVATIVGYGIWGTLLGRYETWRVAPLSLLVPVVGLASAALLLDERLTGLQFLGAVLIMAGLYINVFG  288 (299)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHHHhcc
Confidence            3445543 4455566667778888888888888888999999999999999999999999999999876554

>PF06800 Sugar_transport: Sugar transport protein; InterPro: IPR010651 This is a family of bacterial sugar transporters approximately 300 residues long

Probab=89.49  E-value=0.98  Score=43.34  Aligned_cols=70  Identities=23%  Similarity=0.203  Sum_probs=59.8

Q ss_pred             CccchHhhHHHHHHHHHHHhhhccccccHHHHhccchHHHHHHHHHHHhcccccccc----cchhhheeeceee
Q 021784          183 KAPFVAVGLLEALAAATGMAAGAILSGASIPILSQTFLVWQILLSIIFLGRRYRVNQ----LFGCFLVGIGVII  252 (307)
Q Consensus       183 k~kfli~GllDal~~~L~viA~~ytsgs~~~LL~q~~IP~tmllS~ifLk~RY~~~q----i~G~~IVl~Gliv  252 (307)
                      .|+=++-|++-..+|++..++.+......---|+|..+..+.+...++||.+=+..|    ++|++++++|.++
T Consensus       195 ~~~nil~G~~w~ignl~~~is~~~~G~a~af~lSQ~~vvIStlgGI~il~E~Kt~ke~~~~~~G~~Liv~G~il  268 (269)
T PF06800_consen  195 SWKNILTGLIWGIGNLFYLISAQKNGVATAFTLSQLGVVISTLGGIFILKEKKTKKEMIYTLIGLILIVIGAIL  268 (269)
T ss_pred             hHHhhHHHHHHHHHHHHHHHhHHhccchhhhhHHhHHHHHHHhhhheEEEecCchhhHHHHHHHHHHHHHhhhc
Confidence            467788999999999999999999999999999999999999999999998755444    4677777777654

Members include glucose uptake proteins [], ribose transport proteins, and several putative and hypothetical membrane proteins probably involved in sugar transport across bacterial membranes.; GO: 0015144 carbohydrate transmembrane transporter activity, 0034219 carbohydrate transmembrane transport, 0016021 integral to membrane

>PF04142 Nuc_sug_transp: Nucleotide-sugar transporter; InterPro: IPR007271 This family of membrane proteins transport nucleotide sugars from the cytoplasm into golgi vesicles

Probab=88.99  E-value=3.4  Score=38.58  Aligned_cols=131  Identities=13%  Similarity=0.113  Sum_probs=84.2

Q ss_pred             cchHHHHHHHHHHHhhhhhHHHHHHHhCCCCChhHHHHHHhhhhhHHHHHHHHHHHHhcCccchhhhcCCC--ccchHhh
Q 021784          113 RRVEIVIAAAVTVLLGVGNRVLYKLALVPLKHYPFFLAQLATFGYVAVYFSILYLRYHAGIVTDEMLSMPK--APFVAVG  190 (307)
Q Consensus       113 ~~~~v~i~~i~~Vi~Gv~N~Vl~Kl~~~~~~nYp~Fl~q~~t~~yv~vyf~Il~~r~~~~~it~eml~~Pk--~kfli~G  190 (307)
                      .-+.+...++..++.|.+....-|++-.+-  -|.+.-.++-+.|=.++..+.........+.++. -+..  +..+++-
T Consensus       112 ~~~G~~~vl~~~~~S~~agVy~E~~lK~~~--~s~~~~N~qL~~~gi~~~~~~~~~~~~~~~~~~g-~f~G~~~~~~~~i  188 (244)
T PF04142_consen  112 PLLGLLAVLAAAFLSGFAGVYFEKLLKRSN--VSLWIQNMQLYLFGILFNLLALLLSDGSAISESG-FFHGYSWWVWIVI  188 (244)
T ss_pred             hHhHHHHHHHHHHHHHHHHHHHHHHhcccc--hhHHHHHHHHHHHHHHHHHHHHhcccccccccCC-chhhcchHHHHHH
Confidence            344555556666777888877778755433  4444433332333222222221111111222221 1222  2344566


Q ss_pred             HHHHHHHHHHHhhhccccccHHHHhccchHHHHHHHHHHHhcccccccccchhhhe
Q 021784          191 LLEALAAATGMAAGAILSGASIPILSQTFLVWQILLSIIFLGRRYRVNQLFGCFLV  246 (307)
Q Consensus       191 llDal~~~L~viA~~ytsgs~~~LL~q~~IP~tmllS~ifLk~RY~~~qi~G~~IV  246 (307)
                      ++-+.+++++.+-..|.+.-.=..-....+..+.++|+++.+.+++..-++|+.+|
T Consensus       189 ~~~a~gGllva~v~KyadnI~K~fa~a~siv~t~~~s~~lf~~~~s~~f~lg~~~V  244 (244)
T PF04142_consen  189 FLQAIGGLLVAFVLKYADNIVKGFATAVSIVLTAVLSVLLFGFPPSLSFLLGAALV  244 (244)
T ss_pred             HHHHHhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhCCCCchHHhhheecC
Confidence            78999999999999999998888899999999999999999999999999998765

P78382 from SWISSPROT transports CMP-sialic acid, P78381 from SWISSPROT transports UDP-galactose and Q9Y2D2 from SWISSPROT transports UDP-GlcNAc. This family has some but not complete overlap with the UDP-galactose transporter family IPR004689 from INTERPRO.; GO: 0005351 sugar:hydrogen symporter activity, 0008643 carbohydrate transport, 0000139 Golgi membrane, 0016021 integral to membrane

>KOG4314 consensus Predicted carbohydrate/phosphate translocator [General function prediction only]

Probab=87.89  E-value=1.9  Score=40.46  Aligned_cols=149  Identities=15%  Similarity=0.151  Sum_probs=106.1

Q ss_pred             ccccccchHHHHHHHHHHHhhhhhHHHHHHHhC--CCCChhHHHHHHhhhhhHHHHHHHHHHHHhcCccchh-hhcCCCc
Q 021784          108 SKSNDRRVEIVIAAAVTVLLGVGNRVLYKLALV--PLKHYPFFLAQLATFGYVAVYFSILYLRYHAGIVTDE-MLSMPKA  184 (307)
Q Consensus       108 ~~~~~~~~~v~i~~i~~Vi~Gv~N~Vl~Kl~~~--~~~nYp~Fl~q~~t~~yv~vyf~Il~~r~~~~~it~e-ml~~Pk~  184 (307)
                      |.+....+-=+.+.+.--.+...-+|++|+..-  .+++-..|.+.+-.+-.+..+|+-+ ..++++..+.. --..||-
T Consensus       127 DN~~a~e~iGi~~AV~SA~~aAlYKV~FK~~iGnAn~Gdaa~FmS~LGF~NL~~~~~~~l-IL~~T~VE~~qsFA~~PWG  205 (290)
T KOG4314|consen  127 DNEHADEIIGIACAVGSAFMAALYKVLFKMFIGNANFGDAAHFMSCLGFFNLCFISFPAL-ILAFTGVEHLQSFAAAPWG  205 (290)
T ss_pred             cchhhhhhhhHHHHHHHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHHhhhHH-HHHHhchHHHHHHhhCCch
Confidence            334433333333444444455566788887765  3667788887766666666666553 23344432222 1235666


Q ss_pred             cchHhhHHHHHHHHHHHhhhccccccHHHHhccchHHHHHHHHHHHhcccccccccchhhheeeceeeEeecC
Q 021784          185 PFVAVGLLEALAAATGMAAGAILSGASIPILSQTFLVWQILLSIIFLGRRYRVNQLFGCFLVGIGVIITVASG  257 (307)
Q Consensus       185 kfli~GllDal~~~L~viA~~ytsgs~~~LL~q~~IP~tmllS~ifLk~RY~~~qi~G~~IVl~Glivvv~sg  257 (307)
                      ...-++.+-..-|++..+|..-+.+-++.+=.-..||-....-.+|-..-++...+.|..++++|.++.+.|-
T Consensus       206 ~l~G~A~L~lAFN~~iN~GiaL~~PilISiG~l~~iP~NaaiDiL~q~l~~ntl~La~T~iI~i~FiLiiiP~  278 (290)
T KOG4314|consen  206 CLCGAAGLSLAFNFLINFGIALLNPILISIGMLCGIPGNAAIDILFQELEFNTLFLAATCIICIGFILIIIPE  278 (290)
T ss_pred             hhhhHHHHHHHHhhheeehhhhhchhhheehheecCcchhHHHHHHHHHHHHHHHHHHHHHHHHhHHheeccc
Confidence            6777888888899999999999999888887778899999999988888889999999999999999999983

>PRK10650 multidrug efflux system protein MdtI; Provisional

Probab=87.48  E-value=0.71  Score=38.52  Aligned_cols=69  Identities=12%  Similarity=0.006  Sum_probs=58.0

Q ss_pred             cchHhhHHHHHHHHHHHhhhccccccH-HHHhccchHHHHHHHHHHHhcccccccccchhhheeeceeeE
Q 021784          185 PFVAVGLLEALAAATGMAAGAILSGAS-IPILSQTFLVWQILLSIIFLGRRYRVNQLFGCFLVGIGVIIT  253 (307)
Q Consensus       185 kfli~GllDal~~~L~viA~~ytsgs~-~~LL~q~~IP~tmllS~ifLk~RY~~~qi~G~~IVl~Glivv  253 (307)
                      +.+++-.+=+++-++.-.|.++.|... +.+-...-+..+.+.++++.|.+.+..|++|..++++|++..
T Consensus        37 ~~~~~~~~~~~sf~~Ls~al~~lpvgvAYAvW~GiG~v~~~~ig~~~f~e~~~~~~~~gi~lIi~GVi~l  106 (109)
T PRK10650         37 YGILSLAAVLAAFSALSQAVKGIDLSVAYALWGGFGIAATLAAGWILFGQRLNRKGWIGLVLLLAGMVMI  106 (109)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhhCchHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHh
Confidence            345555666777888888888888776 578888889999999999999999999999999999998764

>PF06027 DUF914: Eukaryotic protein of unknown function (DUF914); InterPro: IPR009262 This family consists of several hypothetical proteins of unknown function

Probab=87.13  E-value=3.1  Score=41.01  Aligned_cols=58  Identities=14%  Similarity=0.177  Sum_probs=49.7

Q ss_pred             HHHhhhccccccHHHHhccchHHHHHHHHHHHhcccccccccchhhheeeceeeEeec
Q 021784          199 TGMAAGAILSGASIPILSQTFLVWQILLSIIFLGRRYRVNQLFGCFLVGIGVIITVAS  256 (307)
Q Consensus       199 L~viA~~ytsgs~~~LL~q~~IP~tmllS~ifLk~RY~~~qi~G~~IVl~Glivvv~s  256 (307)
                      ++-+...+++++..++=.-++.||.+++.+++-|.++++..++|.+++++|+++--..
T Consensus       249 l~p~~l~~ssAt~~nLsLLTsd~~ali~~i~~f~~~~~~ly~~af~lIiiG~vvy~~~  306 (334)
T PF06027_consen  249 LVPIVLRMSSATFFNLSLLTSDFYALIIDIFFFGYKFSWLYILAFALIIIGFVVYNLA  306 (334)
T ss_pred             HHHHHHHhCccceeehHHHHhhHHHHHHHHHhcCccccHHHHHHHHHHHHHhheEEcc
Confidence            4445566788887777677889999999999999999999999999999999988764

Some of the sequences in this family are annotated as putative membrane proteins.

>PRK09541 emrE multidrug efflux protein; Reviewed

Probab=87.07  E-value=0.52  Score=39.24  Aligned_cols=65  Identities=22%  Similarity=0.178  Sum_probs=49.5

Q ss_pred             HHHHHHHHHHhhhccccccH-HHHhccchHHHHHHHHHHHhcccccccccchhhheeeceeeEeec
Q 021784          192 LEALAAATGMAAGAILSGAS-IPILSQTFLVWQILLSIIFLGRRYRVNQLFGCFLVGIGVIITVAS  256 (307)
Q Consensus       192 lDal~~~L~viA~~ytsgs~-~~LL~q~~IP~tmllS~ifLk~RY~~~qi~G~~IVl~Glivvv~s  256 (307)
                      +-+.+-++...+..+.|... +.+....-+..+.++++++++.+.+..|++|..++++|++..-..
T Consensus        39 ~~~~sf~~l~~al~~ipl~iAYavw~GlG~v~~~l~g~~~f~e~~~~~~~~gi~lIi~GVi~l~l~  104 (110)
T PRK09541         39 CYCASFWLLAQTLAYIPTGIAYAIWSGVGIVLISLLSWGFFGQRLDLPAIIGMMLICAGVLVINLL  104 (110)
T ss_pred             HHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhcC
Confidence            34444444555556666655 356667778888999999999999999999999999999876543

>KOG2765 consensus Predicted membrane protein [Function unknown]

Probab=85.74  E-value=5.3  Score=40.44  Aligned_cols=82  Identities=13%  Similarity=0.195  Sum_probs=69.0

Q ss_pred             hhhhcCCCc-c---chHhhHH-HHHHHHHHHhhhccccccHHHHhccchHHHHHHHHHHHhcccccccccchhhheeece
Q 021784          176 DEMLSMPKA-P---FVAVGLL-EALAAATGMAAGAILSGASIPILSQTFLVWQILLSIIFLGRRYRVNQLFGCFLVGIGV  250 (307)
Q Consensus       176 ~eml~~Pk~-k---fli~Gll-Dal~~~L~viA~~ytsgs~~~LL~q~~IP~tmllS~ifLk~RY~~~qi~G~~IVl~Gl  250 (307)
                      +|..++|.. +   .++.|++ -+++.++=.+|.-.|++....+=....||..|+.=.++-++.|+..+++|+..+.+|.
T Consensus       306 ~e~F~lP~~~q~~~vv~~~ligtvvSDylW~~a~~lTs~Lv~TlgmSltIPLA~~aD~l~k~~~~S~~~iiGsi~Ifv~F  385 (416)
T KOG2765|consen  306 EERFELPSSTQFSLVVFNNLIGTVVSDYLWAKAVLLTSPLVVTLGMSLTIPLAMFADVLIKGKHPSALYIIGSIPIFVGF  385 (416)
T ss_pred             cCcccCCCCceeEeeeHhhHHHHHHHHHHHHHHHHhccchhheeeeeEeeeHHHHHHHHHcCCCCCHHHHHHHHHHHHHH
Confidence            355666753 2   3345554 5678899999999999999999999999999999999999999999999999999999


Q ss_pred             eeEeecC
Q 021784          251 IITVASG  257 (307)
Q Consensus       251 ivvv~sg  257 (307)
                      +++-.++
T Consensus       386 v~vn~~~  392 (416)
T KOG2765|consen  386 VIVNISS  392 (416)
T ss_pred             hheeccc
Confidence            8888774

>PF12398 DUF3660: Receptor serine/threonine kinase ; InterPro: IPR022126 This domain family is found in eukaryotes, and is approximately 40 amino acids in length

Probab=82.85  E-value=0.85  Score=32.28  Aligned_cols=30  Identities=27%  Similarity=0.226  Sum_probs=23.6

Q ss_pred             eeeecccccCCCceEEEecCCccccccCCC
Q 021784           33 YLRDHHANQRLPTTLLFRSSKRNYYHNNSN   62 (307)
Q Consensus        33 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   62 (307)
                      ||...++||-||.-=++-||||++|+|+..
T Consensus         3 ~i~~~~RnQ~llmN~~v~sskr~~s~Enk~   32 (42)
T PF12398_consen    3 PIVNRQRNQDLLMNGMVLSSKRQLSGENKT   32 (42)
T ss_pred             ccccccccccccccceEEeccccccccCcc
Confidence            345567899998777788999999998754

The family is found in association with PF00954 from PFAM, PF01453 from PFAM, PF00069 from PFAM, PF08276 from PFAM. There is a conserved ELPL sequence motif. ; GO: 0004674 protein serine/threonine kinase activity

>PF15169 DUF4564: Domain of unknown function (DUF4564)

Probab=82.48  E-value=1.3  Score=40.52  Aligned_cols=60  Identities=20%  Similarity=0.341  Sum_probs=46.0

Q ss_pred             hccccccccc-chhhheeeceeeEeecCCCCCCCCCCcchHHHHHHHHHhhHHHHHHHH--HHHhhhhhhhh
Q 021784          231 LGRRYRVNQL-FGCFLVGIGVIITVASGSNPGHSLKGAGIFWSLLMIVSFLLQAADTVL--KEVIFLDAAQR  299 (307)
Q Consensus       231 Lk~RY~~~qi-~G~~IVl~Glivvv~sgs~~g~s~~~~~vlw~lL~llS~ip~AlSnV~--kE~~fkd~~~~  299 (307)
                      |+++.....| +++.++.+|+.....++         ..++|-++++++|++.|++|+=  +|.+|.+.+.+
T Consensus        15 Lkrsp~~rsWsl~~gi~siGl~~~yys~---------d~~~wK~fyv~~c~fva~~n~edwee~iFdK~kg~   77 (187)
T PF15169_consen   15 LKRSPGIRSWSLLVGIASIGLAAAYYSS---------DSLLWKLFYVAGCLFVALQNMEDWEEAIFDKSKGK   77 (187)
T ss_pred             EEcCCCccchhhHHHHHhcccceeeecC---------CchHHHHHHHHHHHHHHHhcchhhhheeEeccCCE
Confidence            5677777666 46678888888887773         3579999999999999999996  46667665443

>PRK11431 multidrug efflux system protein; Provisional

Probab=80.95  E-value=1.3  Score=36.59  Aligned_cols=67  Identities=16%  Similarity=0.073  Sum_probs=52.8

Q ss_pred             hHhhHHHHHHHHHHHhhhccccccH-HHHhccchHHHHHHHHHHHhcccccccccchhhheeeceeeE
Q 021784          187 VAVGLLEALAAATGMAAGAILSGAS-IPILSQTFLVWQILLSIIFLGRRYRVNQLFGCFLVGIGVIIT  253 (307)
Q Consensus       187 li~GllDal~~~L~viA~~ytsgs~-~~LL~q~~IP~tmllS~ifLk~RY~~~qi~G~~IVl~Glivv  253 (307)
                      ++.-.+=+.+-++.-.|.+..|... +.+-.+.-+..+.+.++++.|.+.+..|++|..++++|++..
T Consensus        33 ~~~i~~~~~sf~~Ls~al~~ip~gvaYAvW~GiG~v~~~lig~~~f~e~~~~~~~~gi~lIi~GVv~l  100 (105)
T PRK11431         33 IITVTAMIVSMALLAWAMKSLPVGTAYAVWTGIGAVGAAITGIVLLGESASPARLLSLALIVAGIIGL  100 (105)
T ss_pred             HHHHHHHHHHHHHHHHHHhhCCcHhHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHhh
Confidence            3344445566666666777777665 467777888899999999999999999999999999998765

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	307
2i68_A	137	Protein EMRE; transmembrane protein, small-multidr	96.41
3b5d_A	110	Multidrug transporter EMRE; helical membrane prote	96.36

>2i68_A Protein EMRE; transmembrane protein, small-multidrug resistance, transporter, homodimer, dual topology, transport protein; NMR {Escherichia coli}

Probab=96.41  E-value=0.0012  Score=55.47  Aligned_cols=73  Identities=22%  Similarity=0.157  Sum_probs=51.2

Q ss_pred             ccchHhhHHHHHHHHHHHhhhccccccHHHHh-ccchHHHHHHHHHHHhcccccccccchhhheeeceeeEeec
Q 021784          184 APFVAVGLLEALAAATGMAAGAILSGASIPIL-SQTFLVWQILLSIIFLGRRYRVNQLFGCFLVGIGVIITVAS  256 (307)
Q Consensus       184 ~kfli~GllDal~~~L~viA~~ytsgs~~~LL-~q~~IP~tmllS~ifLk~RY~~~qi~G~~IVl~Glivvv~s  256 (307)
                      |++++..++-+++-++...|+.+.|.+....+ ......++++++++||+.+.+..|++|+.++++|+++....
T Consensus        31 ~~~~l~i~~~~ls~~l~~~alk~i~~s~ay~iw~~l~pv~~~l~g~l~lgE~ls~~~~~Gi~LIi~GV~ll~~~  104 (137)
T 2i68_A           31 WPSVGTIICYCASFWLLAQTLAYIPTGIAYAIWSGVGIVLISLLSWGFFGQRLDLPAIIGMMLICAGVLIINLL  104 (137)
T ss_dssp             ---CHHHHHHHHHHHHHHHHHC-----CHHHHHHHHHHHHHHHHHHHHHC------CHHHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhcC
Confidence            34555567788889999999999999976555 89999999999999999999999999999999999887654

>3b5d_A Multidrug transporter EMRE; helical membrane protein, multidrug resistance transporter, SMR, antiport, inner membrane, transmembrane; HET: P4P; 3.80A {Escherichia coli K12} PDB: 3b61_A 3b62_A*

Probab=96.36  E-value=0.0018  Score=52.06  Aligned_cols=72  Identities=22%  Similarity=0.175  Sum_probs=61.0

Q ss_pred             cchHhhHHHHHHHHHHHhhhccccccHHHHh-ccchHHHHHHHHHHHhcccccccccchhhheeeceeeEeec
Q 021784          185 PFVAVGLLEALAAATGMAAGAILSGASIPIL-SQTFLVWQILLSIIFLGRRYRVNQLFGCFLVGIGVIITVAS  256 (307)
Q Consensus       185 kfli~GllDal~~~L~viA~~ytsgs~~~LL-~q~~IP~tmllS~ifLk~RY~~~qi~G~~IVl~Glivvv~s  256 (307)
                      ++++..++-..+-++...|+.+.|.+...-+ ......++.+++++++|.+.+..|++|+.++++|+++....
T Consensus        32 ~~~~~~~~~~~~~~~~~~al~~~p~s~ay~i~~g~~~v~~~l~~~~~~~E~~s~~~~~Gi~lIi~Gv~~l~~~  104 (110)
T 3b5d_A           32 PSVGTIICYCASFWLLAQTLAYIPTGIAYAIWSGVGIVLISLLSWGFFGQRLDLPAIIGMMLICAGVLIINLL  104 (110)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhCChhhHHHHHhhHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhcC
Confidence            4444555677788888889999999887555 89999999999999999999999999999999999876554

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00