Citrus Sinensis ID: 021802

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------
Protein Sequence
MISEGKEQSARILATCLIAGAVMVAGFSLLTLYLAAPNDRWLQWTRKKKKPVRVYMDGCFDMMHYGHCNALRQARALGDQLVVGVVSDAEIIANKGPPVTPLHERMIMVNAVKWVDEVISDAPYAITKDFMKKLFDEYNIDYIIHGDDPCVLPDGTDAYELAKKAGRYKQIKRTEGVSSTDIVGRMLLCVRERSISDSHNHSSLQRQFSHGHNQKVEERGSGGTRVSHFLPTSRRIVQFSNGKGPGPDARIIYIDGAFDLFHAGHVEILRIARGLGDFLLVGIHNDQTVRLKNPSVSFILLDFTLIL
Secondary Structure (PSIPRED)
cccccccccHHHHHHHHHccccccccccHHHHHcccccHHHHHHHHcccccEEEEEccccccccHHHHHHHHHHHHcccEEEEEEcccHHHHHccccccccHHHHHHHHHHccccEEEEccccccccHHHHHHHHHHccccEEEEccccccccccccHHHHHHHccEEEEEcccccccHHHHHHHHHHHHcccccccccccccHHHHcccccccccccccccccccEEcccccHHEEEcccccccccccEEEEEEcccccccHHHHHHHHHHHHcccEEEEEEcccHHHHHcccccccccccccccc
Secondary Structure Prediction (SSPRO)
ccccccccccHHHHHHEHccEEEcccccEEcccccccHHHHccccccccccEEEEEcccHHHHHHHHHHHHHHHHHcccEEEEEEccHHHHHHccccccccHHHHHHHHHHHHHHHHccccccccccHHHHHHHHHHccccEEEEccccccccccccHHHHHHHcccEEEEEccccccHHHHHHHHHHHHHHHHcccHHHHHHHHcccccccccccccccccccccccccccccHEEEEccccccccccEEEEEcccccHccHHHHHHHHHHHHcccEEEEEEcccHHHHHHcccccccEEEEEEcc
Coil and Loop (DISEMBL)
MISEGKEQSARILATCLIAGAVMVAGFSLLTLYLAapndrwlqwtrkkkkpvrVYMDGCFDMMHYGHCNALRQARALGDQLVVGVVSDAeiiankgppvtplheRMIMVNAVKWVDEvisdapyaITKDFMKKLFDEYNidyiihgddpcvlpdgtdAYELAKKAGrykqikrtegvsstdIVGRMLLCVRErsisdshnhsslqrqfshghnqkveergsggtrvshflptsrrivqfsngkgpgpdariIYIDGAFDLFHAGHVEILRIARGLGDFLLVGihndqtvrlknpsvsfilldFTLIL
Flexible Loop (DISEMBL)
MISEGKEQSARILATCLIAGAVMVAGFSLLTLYLAapndrwlqwtrkkkkPVRVYMDGCFDMMHYGHCNALRQARALGDQLVVGVVSDAEIiankgppvtplheRMIMVNAVKWVDEVISDAPYAITKDFMKKLFDEYNIDYIIHGDDPCVLPDGTDAYELAKkagrykqikrtegvsstdivGRMLLCVRERSISDSHNHSSlqrqfshghnqkveergsggtrvshflptsrrivqfsngkgpgpDARIIYIDGAFDLFHAGHVEILRIARGLGDFLLVGIHNdqtvrlknpsvsfilldftlil
Low Complexity Region (SEG)
MISEGKEQSARILATCLIAGAVMVAGFSLLTLYLAAPNDRWLQWTRKKKKPVRVYMDGCFDMMHYGHCNALRQARALGDQLVVGVVSDAEIIANKGPPVTPLHERMIMVNAVKWVDEVISDAPYAITKDFMKKLFDEYNIDYIIHGDDPCVLPDGTDAYELAKKAGRYKQIKRTEGVSSTDIVGRMLLCVRERSISDSHNHSSLQRQFSHGHNQKVEERGSGGTRVSHFLPTSRRIVQFSNGKGPGPDARIIYIDGAFDLFHAGHVEILRIARGLGDFLLVGIHNDQTVRLKNPSVSFILLDFTLIL
Disordered region (IsUnstruct)
**********RILATCLIAGAVMVAGFSLLTLYLAAPNDRWLQWTRKKKKPVRVYMDGCFDMMHYGHCNALRQARALGDQLVVGVVSDAEIIANKGPPVTPLHERMIMVNAVKWVDEVISDAPYAITKDFMKKLFDEYNIDYIIHGDDPCVLPDGTDAYELAKKAGRYKQIKRTEGVSSTDIVGRMLLCVR********************************************IVQF*******PDARIIYIDGAFDLFHAGHVEILRIARGLGDFLLVGIHNDQTVRLKNPSVSFILLDFTLI*
Disordered Region (DISOPRED)
**************TCLIAGAVMVAGFSLLTLY********************VYMDGCFDMMHYGHCNALRQARALGDQLVVGVVSDAEIIANKGPPVTPLHERMIMVNAVKWVDEVISDAPYAITKDFMKKLFDEYNIDYIIHGDDPCVLPDGTDAYELAKKAGRYKQIKRTEGVSSTDIVGRMLLCVRERS***************HGHNQKVEERGSGGTRVSHFLPTSRRIVQFSNGKGPGPDARIIYIDGAFDLFHAGHVEILRIARGLGDFLLVGIHNDQTVRLKNPSVSFILLDFTLIL
Disordered Region (DISEMBL)
********SARILATCLIAGAVMVAGFSLLTLYLAAPNDRWLQWTRKKKKPVRVYMDGCFDMMHYGHCNALRQARALGDQLVVGVVSDAEIIANKGPPVTPLHERMIMVNAVKWVDEVISDAPYAITKDFMKKLFDEYNIDYIIHGDDPCVLPDGTDAYELAKKAGRYKQIKRTEGVSSTDIVGRMLLCVRERSIS***************************TRVSHFLPTSRRIVQFSNGKGPGPDARIIYIDGAFDLFHAGHVEILRIARGLGDFLLVGIHNDQTVRLKNPSVSFILLDFTLIL
Disordered Region (DISPRO)
*****KEQSARILATCLIAGAVMVAGFSLLTLYLAAPNDRWLQWTRKKKKPVRVYMDGCFDMMHYGHCNALRQARALGDQLVVGVVSDAEIIANKGPPVTPLHERMIMVNAVKWVDEVISDAPYAITKDFMKKLFDEYNIDYIIHGDDPCVLPDGTDAYELAKKAGRYKQIKRTEGVSSTDIVGRMLLCVRERSISD*HNHS******************S**T*VSHFLPTSRRIVQFSNGKGPGPDARIIYIDGAFDLFHAGHVEILRIARGLGDFLLVGIHNDQTVRLKNPSVSFILLDFTLIL
Transmembrane Helix (TMHMM)
iiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
iiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
SSSSSSSSSSSSSSSSSSSSSSSSSSSoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MISEGKEQSARILATCLIAGAVMVAGFSLLTLYLAAPNDRWLQWTRKKKKPVRVYMDGCFDMMHYGHCNALRQARALGDQLVVGVVSDAEIIANKGPPVTPLHERMIMVNAVKWVDEVISDAPYAITKDFMKKLFDEYNIDYIIHGDDPCVLPDGTDAYELAKKAGRYKQIKRTEGVSSTDIVGRMLLCVRERSISDSHNHSSLQRQFSHGHNQKVEERGSGGTRVSHFLPTSRRIVQFSNGKGPGPDARIIYIDGAFDLFHAGHVEILRIARGLGDFLLVGIHNDQTVRLKNPSVSFILLDFTLIL
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	307	2.2.26 [Sep-21-2011]
Q55BZ4	360	Ethanolamine-phosphate cy	yes	no	0.771	0.658	0.538	6e-71
Q5EA75	389	Ethanolamine-phosphate cy	yes	no	0.768	0.606	0.481	5e-60
Q99447	389	Ethanolamine-phosphate cy	yes	no	0.762	0.601	0.481	5e-59
O88637	404	Ethanolamine-phosphate cy	yes	no	0.765	0.581	0.453	8e-58
Q922E4	404	Ethanolamine-phosphate cy	yes	no	0.755	0.574	0.459	2e-57
Q8SQW6	322	Probable ethanolamine-pho	yes	no	0.687	0.655	0.399	1e-43
Q9UTI6	365	Probable ethanolamine-pho	yes	no	0.726	0.610	0.367	1e-38
P33412	323	Ethanolamine-phosphate cy	yes	no	0.671	0.637	0.340	3e-28
P49587	370	Choline-phosphate cytidyl	N/A	no	0.446	0.370	0.378	2e-23
P49583	362	Putative choline-phosphat	no	no	0.488	0.414	0.370	4e-22

>sp|Q55BZ4|PCY2_DICDI Ethanolamine-phosphate cytidylyltransferase OS=Dictyostelium discoideum GN=pctA PE=1 SV=1

 Score =  267 bits (683), Expect = 6e-71,   Method: Compositional matrix adjust.
 Identities = 132/245 (53%), Positives = 168/245 (68%), Gaps = 8/245 (3%)

Query: 45  TRKKKKPVRVYMDGCFDMMHYGHCNALRQARALGDQLVVGVVSDAEIIANKGPPVTPLHE 104
           T   KKP+RVY+DGCFD+MH+GH NALRQAR LGD LVVGV +D EI  NKGPPV    E
Sbjct: 3   TTTNKKPIRVYVDGCFDLMHFGHANALRQARELGDILVVGVHTDEEIAKNKGPPVMNEQE 62

Query: 105 RMIMVNAVKWVDEVISDAPYAITKDFMKKLFDEYNIDYIIHGDDPCVLPDGTDAYELAKK 164
           R   V A KW DEV   APY +T++++    D  N D+ +HG+D  V  DG D YE  KK
Sbjct: 63  RYKAVRACKWADEVAEGAPYTLTEEYL----DSLNCDFCVHGEDISVGADGKDVYEGIKK 118

Query: 165 AGRYKQIKRTEGVSSTDIVGRMLLCVRERSISDSHNHSSLQRQFSHGHNQKVEERGSGGT 224
           +G+++ IKRTEGVS+T++VGRMLLC ++       N S  Q     G N  V  + S  T
Sbjct: 119 SGKFRFIKRTEGVSTTELVGRMLLCTKDH----LQNVSGEQTSPLGGVNPNVLHKQSPYT 174

Query: 225 RVSHFLPTSRRIVQFSNGKGPGPDARIIYIDGAFDLFHAGHVEILRIARGLGDFLLVGIH 284
            +SHFLPT+R+IVQFS G+ P P+ +IIY+DG FDLFH GH E L+ AR LGD+L+VG+H
Sbjct: 175 SLSHFLPTTRKIVQFSEGRSPKPNDKIIYMDGGFDLFHVGHTEALKQARALGDYLIVGVH 234

Query: 285 NDQTV 289
           +D+ V
Sbjct: 235 DDRVV 239

Plays an important role in the biosynthesis of the phospholipid phosphatidylethanolamine. Catalyzes the formation of CDP-ethanolamine.
Dictyostelium discoideum (taxid: 44689)
EC: 2EC: .EC: 7EC: .EC: 7EC: .EC: 1EC: 4

>sp|Q5EA75|PCY2_BOVIN Ethanolamine-phosphate cytidylyltransferase OS=Bos taurus GN=PCYT2 PE=2 SV=1

 Score =  231 bits (589), Expect = 5e-60,   Method: Compositional matrix adjust.
 Identities = 118/245 (48%), Positives = 162/245 (66%), Gaps = 9/245 (3%)

Query: 47  KKKKPVRVYMDGCFDMMHYGHCNALRQARALGDQLVVGVVSDAEIIANKGPPVTPLHERM 106
           + ++ VRV+ DGC+DM+HYGH N LRQARA+GD L+VGV +D EI  +KGPPV    ER 
Sbjct: 18  RARRAVRVWCDGCYDMVHYGHSNQLRQARAMGDHLIVGVHTDEEIAKHKGPPVFTQEERY 77

Query: 107 IMVNAVKWVDEVISDAPYAITKDFMKKLFDEYNIDYIIHGDDPCVLPDGTDAYELAKKAG 166
            MV A+KWVDEV+  APY  T + +    D+YN D+ +HG+D  +  DG D YE  K+AG
Sbjct: 78  KMVQAIKWVDEVVPAAPYVTTLETL----DKYNCDFCVHGNDITLTVDGRDTYEEVKQAG 133

Query: 167 RYKQIKRTEGVSSTDIVGRMLLCVRERSISDSHNHSSLQRQFSHGHNQKVEERGSGGTRV 226
           RY++ KRT+GVS+TD+VGRMLL    ++   S   SS  R+++    +    R    T V
Sbjct: 134 RYRECKRTQGVSTTDLVGRMLLVT--KAHHSSQEMSSEYREYADSFGKCPGGRNP-WTGV 190

Query: 227 SHFLPTSRRIVQFSNGKGPGPDARIIYIDGAFDLFHAGHVEILRIARGLGD--FLLVGIH 284
           S FL TS++I+QF++GK P P   +IY+ GAFDLFH GHV+ L    GL +  +++ G+H
Sbjct: 191 SQFLQTSQKIIQFASGKEPQPGETVIYVAGAFDLFHIGHVDFLEKVYGLAERPYVIAGLH 250

Query: 285 NDQTV 289
            DQ V
Sbjct: 251 FDQEV 255

Plays an important role in the biosynthesis of the phospholipid phosphatidylethanolamine. Catalyzes the formation of CDP-ethanolamine.

Bos taurus (taxid: 9913)

EC: 2

EC: .

EC: 7

EC: .

EC: 7

EC: .

EC: 1

EC: 4

>sp|Q99447|PCY2_HUMAN Ethanolamine-phosphate cytidylyltransferase OS=Homo sapiens GN=PCYT2 PE=1 SV=1

 Score =  228 bits (581), Expect = 5e-59,   Method: Compositional matrix adjust.
 Identities = 117/243 (48%), Positives = 160/243 (65%), Gaps = 9/243 (3%)

Query: 49  KKPVRVYMDGCFDMMHYGHCNALRQARALGDQLVVGVVSDAEIIANKGPPVTPLHERMIM 108
           ++ VRV+ DGC+DM+HYGH N LRQARA+GD L+VGV +D EI  +KGPPV    ER  M
Sbjct: 20  RRAVRVWCDGCYDMVHYGHSNQLRQARAMGDYLIVGVHTDEEIAKHKGPPVFTQEERYKM 79

Query: 109 VNAVKWVDEVISDAPYAITKDFMKKLFDEYNIDYIIHGDDPCVLPDGTDAYELAKKAGRY 168
           V A+KWVDEV+  APY  T + +    D+YN D+ +HG+D  +  DG D YE  K+AGRY
Sbjct: 80  VQAIKWVDEVVPAAPYVTTLETL----DKYNCDFCVHGNDITLTVDGRDTYEEVKQAGRY 135

Query: 169 KQIKRTEGVSSTDIVGRMLLCVRERSISDSHNHSSLQRQFSHGHNQKVEERGSGGTRVSH 228
           ++ KRT+GVS+TD+VGRMLL    ++   S   SS  R+++    +    R    T VS 
Sbjct: 136 RECKRTQGVSTTDLVGRMLLVT--KAHHSSQEMSSEYREYADSFGKCPGGRNP-WTGVSQ 192

Query: 229 FLPTSRRIVQFSNGKGPGPDARIIYIDGAFDLFHAGHVEILRIARGLGD--FLLVGIHND 286
           FL TS++I+QF++GK P P   +IY+ GAFDLFH GHV+ L     L +  +++ G+H D
Sbjct: 193 FLQTSQKIIQFASGKEPQPGETVIYVAGAFDLFHIGHVDFLEKVHRLAERPYIIAGLHFD 252

Query: 287 QTV 289
           Q V
Sbjct: 253 QEV 255

Plays an important role in the biosynthesis of the phospholipid phosphatidylethanolamine. Catalyzes the formation of CDP-ethanolamine.

Homo sapiens (taxid: 9606)

EC: 2

EC: .

EC: 7

EC: .

EC: 7

EC: .

EC: 1

EC: 4

>sp|O88637|PCY2_RAT Ethanolamine-phosphate cytidylyltransferase OS=Rattus norvegicus GN=Pcyt2 PE=1 SV=1

 Score =  224 bits (570), Expect = 8e-58,   Method: Compositional matrix adjust.
 Identities = 118/260 (45%), Positives = 164/260 (63%), Gaps = 25/260 (9%)

Query: 49  KKPVRVYMDGCFDMMHYGHCNALRQARALGDQLVVGVVSDAEIIANKGPPVTPLHERMIM 108
           ++ VRV+ DGC+DM+HYGH N LRQARA+GD L+VGV +D EI  +KGPPV    ER  M
Sbjct: 20  QRTVRVWCDGCYDMVHYGHSNQLRQARAMGDYLIVGVHTDEEIAKHKGPPVFTQEERYKM 79

Query: 109 VNAVKWVDEVISDAPYAITKDFMKKLFDEYNIDYIIHGDDPCVLPDGTDAYELAKKAGRY 168
           V A+KWVDEV+  APY  T + +    D++N D+ +HG+D  +  DG D YE  K+AGRY
Sbjct: 80  VQAIKWVDEVVPAAPYVTTLETL----DKHNCDFCVHGNDITLTVDGRDTYEEVKQAGRY 135

Query: 169 KQIKRTEGVSSTDIVGRMLLCVRERSISDSHNHSSLQRQFSHGHNQ-------------K 215
           ++ KRT+GVS+TD+VGRMLL    ++   S   SS  R+++    +             +
Sbjct: 136 RECKRTQGVSTTDLVGRMLLVT--KAHHSSQEMSSEYREYADSFGKPPHPTPAGDTLSSE 193

Query: 216 VEERGSGG----TRVSHFLPTSRRIVQFSNGKGPGPDARIIYIDGAFDLFHAGHVEILRI 271
           V  +  GG    T VS FL TS++I+QF++GK P P   +IY+ GAFDLFH GHV+ L+ 
Sbjct: 194 VSSQCPGGQSPWTGVSQFLQTSQKIIQFASGKEPQPGETVIYVAGAFDLFHIGHVDFLQE 253

Query: 272 ARGLGD--FLLVGIHNDQTV 289
              L    +++ G+H DQ V
Sbjct: 254 VHKLAKRPYVIAGLHFDQEV 273

Plays an important role in the biosynthesis of the phospholipid phosphatidylethanolamine. Catalyzes the formation of CDP-ethanolamine.

Rattus norvegicus (taxid: 10116)

EC: 2

EC: .

EC: 7

EC: .

EC: 7

EC: .

EC: 1

EC: 4

>sp|Q922E4|PCY2_MOUSE Ethanolamine-phosphate cytidylyltransferase OS=Mus musculus GN=Pcyt2 PE=1 SV=1

 Score =  222 bits (566), Expect = 2e-57,   Method: Compositional matrix adjust.
 Identities = 118/257 (45%), Positives = 161/257 (62%), Gaps = 25/257 (9%)

Query: 52  VRVYMDGCFDMMHYGHCNALRQARALGDQLVVGVVSDAEIIANKGPPVTPLHERMIMVNA 111
           VRV+ DGC+DM+HYGH N LRQARA+GD L+VGV +D EI  +KGPPV    ER  MV A
Sbjct: 23  VRVWCDGCYDMVHYGHSNQLRQARAMGDYLIVGVHTDEEIAKHKGPPVFTQEERYKMVQA 82

Query: 112 VKWVDEVISDAPYAITKDFMKKLFDEYNIDYIIHGDDPCVLPDGTDAYELAKKAGRYKQI 171
           +KWVDEV+  APY  T + +    D++N D+ +HG+D  +  DG D YE  K+AGRY++ 
Sbjct: 83  IKWVDEVVPAAPYVTTLETL----DKHNCDFCVHGNDITLTVDGRDTYEEVKQAGRYREC 138

Query: 172 KRTEGVSSTDIVGRMLLCVRERSISDSHNHSSLQRQFSHGHNQ-------------KVEE 218
           KRT+GVS+TD+VGRMLL  +      S   SS  R+++    +             +V  
Sbjct: 139 KRTQGVSTTDLVGRMLLVTKAH--HSSQEMSSEYREYADSFGKPPHPTPAGDTLSSEVSS 196

Query: 219 RGSGG----TRVSHFLPTSRRIVQFSNGKGPGPDARIIYIDGAFDLFHAGHVEILRIARG 274
           +  GG    T VS FL TS++I+QF++GK P P   +IY+ GAFDLFH GHV+ L+    
Sbjct: 197 QCPGGQSPWTGVSQFLQTSQKIIQFASGKEPQPGETVIYVAGAFDLFHIGHVDFLQEVHK 256

Query: 275 LGD--FLLVGIHNDQTV 289
           L    +++ G+H DQ V
Sbjct: 257 LAKRPYVIAGLHFDQEV 273

Plays an important role in the biosynthesis of the phospholipid phosphatidylethanolamine. Catalyzes the formation of CDP-ethanolamine.

Mus musculus (taxid: 10090)

EC: 2

EC: .

EC: 7

EC: .

EC: 7

EC: .

EC: 1

EC: 4

>sp|Q8SQW6|ECT1_ENCCU Probable ethanolamine-phosphate cytidylyltransferase OS=Encephalitozoon cuniculi (strain GB-M1) GN=MUQ1 PE=1 SV=1

 Score =  176 bits (447), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 95/238 (39%), Positives = 136/238 (57%), Gaps = 27/238 (11%)

Query: 53  RVYMDGCFDMMHYGHCNALRQARALGDQLVVGVVSDAEIIANKGPPVTPLHERMIMVNAV 112
           +V+ DGCFDM HYGH NALRQ++ALGD L+ GV S   I   KG PV    ER  +V   
Sbjct: 8   KVWADGCFDMFHYGHANALRQSKALGDYLIAGVHSSLSINQEKGLPVMEDEERYEVVEGC 67

Query: 113 KWVDEVISDAPYAITKDFMKKLFDEYNIDYIIHGDDPCVLPDGTDAYELAKKAGRYKQIK 172
           ++VDEV+ DAP+      +K    EY +  + HG+D  +   G D+Y   ++ G +++++
Sbjct: 68  RYVDEVVRDAPFVTQTSMIK----EYGVSIVAHGNDIVLDSSGQDSYCQVRRMGIFREVE 123

Query: 173 RTEGVSSTDIVGRMLLCVRERSISDSHNHSSLQRQFSHGHNQKVEERGSGGTRVSHFLPT 232
           RT G+S+T+IVGRM+L  R  S  D  N  S +    H                      
Sbjct: 124 RTFGISTTEIVGRMMLKNRG-SWLDGENGESSKDSGYH---------------------- 160

Query: 233 SRRIVQFSNGKGPGPDARIIYIDGAFDLFHAGHVEILRIARGLGDFLLVGIHNDQTVR 290
            R +  F +  G     +++++DG FDLFHAGHV  LRIARG+GD+L+VGIH+D+T +
Sbjct: 161 DRLLSLFMSSMGREKRGKVVFMDGNFDLFHAGHVASLRIARGMGDYLIVGIHDDETTK 218

Encephalitozoon cuniculi (strain GB-M1) (taxid: 284813)

EC: 2

EC: .

EC: 7

EC: .

EC: 7

EC: .

EC: 1

EC: 4

>sp|Q9UTI6|ECT1_SCHPO Probable ethanolamine-phosphate cytidylyltransferase OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPAC15E1.05c PE=2 SV=1

 Score =  160 bits (404), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 90/245 (36%), Positives = 134/245 (54%), Gaps = 22/245 (8%)

Query: 53  RVYMDGCFDMMHYGHCNALRQARALGDQLVVGVVSDAEIIANKGPPVTPLHERMIMVNAV 112
           R+++DGC D  HYGH NA+ QA+ LG+ LV+G+ SD EI  NKGPPV  L ER +  N  
Sbjct: 10  RLWLDGCMDFFHYGHSNAILQAKQLGETLVIGIHSDEEITLNKGPPVMTLEERCLSANTC 69

Query: 113 KWVDEVISDAPYAITKDFMKKLFDEYNIDYIIHGDDPCVLPDGTDAYELAKKAGRYKQIK 172
           KWVDEV+  APY    ++M++    Y   Y++HGDD     +G D Y  AK A +Y ++K
Sbjct: 70  KWVDEVVPSAPYVFDLEWMRR----YGCQYVVHGDDISTDANGDDCYRFAKAADQYLEVK 125

Query: 173 RTEGVSSTDIVGRML----LCVRERSISDSHNHSSLQRQFSHGHNQKVEERGSGGTRVSH 228
           RTEGVS+T+++ R+L    L +    +S   +   L R+F+   +        G T  + 
Sbjct: 126 RTEGVSTTELLDRLLSSVPLEIYSTPVSVLSSQIDLLRRFATDSD--------GLTPFTD 177

Query: 229 -FLPTSRRIVQFSNGKG---PGPDARIIYIDGAFDLFHAGHVEILRIARGL--GDFLLVG 282
            F+  + +     +G       P+  IIYIDG +DLF   H+  L +   +  G  ++ G
Sbjct: 178 VFIYNTEKPETLISGTTLLRLNPEKNIIYIDGDWDLFTEKHISALELCTRMFPGIPIMAG 237

Query: 283 IHNDQ 287
           I  D+
Sbjct: 238 IFADE 242

Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)

EC: 2

EC: .

EC: 7

EC: .

EC: 7

EC: .

EC: 1

EC: 4

>sp|P33412|ECT1_YEAST Ethanolamine-phosphate cytidylyltransferase OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=ECT1 PE=1 SV=1

 Score =  125 bits (315), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 77/226 (34%), Positives = 116/226 (51%), Gaps = 20/226 (8%)

Query: 51  PVRVYMDGCFDMMHYGHCNALRQARAL----GDQLVVGVVSDAEIIANKGPPVTPLHERM 106
           P +V++DGCFD  H+GH  A+ QAR        +L  GV +D +I  NKG PV    ER 
Sbjct: 7   PDKVWIDGCFDFTHHGHAGAILQARRTVSKENGKLFCGVHTDEDIQHNKGTPVMNSSERY 66

Query: 107 IMVNAVKWVDEVISDAPYAITKDFMKKLFDEYNIDYIIHGDDPCVLPDGTDAYELAKKAG 166
               + +W  EV+  APY    ++M    D+Y   Y++HGDD  +  +G D Y+L K+ G
Sbjct: 67  EHTRSNRWCSEVVEAAPYVTDPNWM----DKYQCQYVVHGDDITIDANGEDCYKLVKEMG 122

Query: 167 RYKQIKRTEGVSSTDIVGRMLLCVRERSISDSHNHSSLQRQFSHGHNQKVEERGSGGTRV 226
           R+K +KRT GVS+T+I+ R+L    ++S+  +H          +   Q++         V
Sbjct: 123 RFKVVKRTYGVSTTEIIHRILT---KKSLPPTHPD-------YYPTTQELSFYSVAQDAV 172

Query: 227 SHFLPTSRRIVQ--FSNGKGPGPDARIIYIDGAFDLFHAGHVEILR 270
           S      +R +     NG         +Y+DG FDLFH G ++ LR
Sbjct: 173 SKHCYVFQRDLDNVLVNGGYKFDAEDCVYVDGDFDLFHMGDIDQLR 218

Ethanolamine-phosphate cytidylyltransferase which catalyzes the second step of phosphatidylethanolamine biosynthesis. Involved in the maintenance of plasma membrane and required for proper sporulation.

Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (taxid: 559292)

EC: 2

EC: .

EC: 7

EC: .

EC: 7

EC: .

EC: 1

EC: 4

>sp|P49587|PCY1_PLAFK Choline-phosphate cytidylyltransferase OS=Plasmodium falciparum (isolate K1 / Thailand) GN=CTP PE=2 SV=1

 Score =  110 bits (274), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 61/161 (37%), Positives = 86/161 (53%), Gaps = 24/161 (14%)

Query: 47  KKKKPVRVYMDGCFDMMHYGHCNALRQARALGDQ--LVVGVVSDAEIIANKGPPVTPLHE 104
           K  K V +Y DG +DM+H GH   L QA+ L +   L+VGV SD E    KG  V  L E
Sbjct: 87  KNSKNVVIYADGVYDMLHLGHMKQLEQAKKLFENTTLIVGVTSDNETKLFKGQVVQTLEE 146

Query: 105 RMIMVNAVKWVDEVISDAPYAITKDFMKKLFDEYNIDYIIHGDDPCVL------------ 152
           R   +  ++WVDE+IS  P+ +T +F++K    Y IDY+ H D P               
Sbjct: 147 RTETLKHIRWVDEIISPCPWVVTPEFLEK----YKIDYVAHDDIPYANNQKKKKKKKSKG 202

Query: 153 ------PDGTDAYELAKKAGRYKQIKRTEGVSSTDIVGRML 187
                  +  D Y   K+AG++K  +RTEGVS+TD++ R+L
Sbjct: 203 KSFSFDEENEDIYAWLKRAGKFKATQRTEGVSTTDLIVRIL 243

Controls phosphatidylcholine synthesis.

Plasmodium falciparum (isolate K1 / Thailand) (taxid: 5839)

EC: 2

EC: .

EC: 7

EC: .

EC: 7

EC: .

EC: 1

EC: 5

>sp|P49583|PCY1_CAEEL Putative choline-phosphate cytidylyltransferase OS=Caenorhabditis elegans GN=F08C6.2 PE=2 SV=2

 Score =  105 bits (262), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 60/162 (37%), Positives = 90/162 (55%), Gaps = 12/162 (7%)

Query: 50  KPVRVYMDGCFDMMHYGHCNALRQARALGDQ--LVVGVVSDAEIIANKGPPVTPLHERMI 107
           +PVR+Y DG +D+ H+GH N LRQ + +     L+VGV  D +    KG  VT   ER  
Sbjct: 79  RPVRIYADGIYDLFHHGHANQLRQVKKMFPNVYLIVGVCGDRDTHKYKGRTVTSEEERYD 138

Query: 108 MVNAVKWVDEVISDAPYAITKDFMKKLFDEYNIDYIIHGDDPCVLPDGTDAYELAKKAGR 167
            V   ++VDEV  +AP+  T +F+K L     +D+I H   P V P   D YE  ++ G 
Sbjct: 139 GVRHCRYVDEVYREAPWFCTVEFLKNL----KVDFIAHDAIPYVAPGEEDLYEKFRREGM 194

Query: 168 YKQIKRTEGVSSTDIVGRMLLCVRERSISDSHNHSSLQRQFS 209
           + + +RTEGVS++D+V R++         D +   +LQR +S
Sbjct: 195 FLETERTEGVSTSDVVCRIIRDY------DKYVRRNLQRGYS 230

Caenorhabditis elegans (taxid: 6239)

EC: 2

EC: .

EC: 7

EC: .

EC: 7

EC: .

EC: 1

EC: 5

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	307
225439047	421	PREDICTED: ethanolamine-phosphate cytidy	0.908	0.662	0.862	1e-141
449497225	351	PREDICTED: ethanolamine-phosphate cytidy	0.973	0.851	0.798	1e-136
449439781	431	PREDICTED: ethanolamine-phosphate cytidy	0.928	0.661	0.829	1e-136
224140661	429	predicted protein [Populus trichocarpa]	0.915	0.655	0.821	1e-132
239056198	424	Ethanolamine-phosphate cytidylyltransfer	0.908	0.658	0.811	1e-132
255557903	418	Ethanolamine-phosphate cytidylyltransfer	0.918	0.674	0.815	1e-131
15224925	421	ethanolamine-phosphate cytidylyltransfer	0.928	0.676	0.799	1e-130
297823753	421	hypothetical protein ARALYDRAFT_903103 [	0.928	0.676	0.799	1e-130
224069032	362	predicted protein [Populus trichocarpa]	0.771	0.654	0.928	1e-127
296085807	362	unnamed protein product [Vitis vinifera]	0.762	0.646	0.919	1e-126

>gi|225439047|ref|XP_002265169.1| PREDICTED: ethanolamine-phosphate cytidylyltransferase isoform 1 [Vitis vinifera] gi|239056178|emb|CAQ58612.1| Ethanolamine-phosphate cytidylyltransferase [Vitis vinifera]

 Score =  508 bits (1309), Expect = e-141,   Method: Compositional matrix adjust.
 Identities = 244/283 (86%), Positives = 262/283 (92%), Gaps = 4/283 (1%)

Query: 8   QSARILATCLIAGAVMVAGFSLLTLYLAAPNDRWLQWTRKKKKPVRVYMDGCFDMMHYGH 67
           QS+++LATCLI G V+  G S+L  YLA P  R L W R+KKKP+RVYMDGCFDMMHYGH
Sbjct: 15  QSSKLLATCLIGGVVL--GVSVLGFYLAFPPPRQLSW-RRKKKPIRVYMDGCFDMMHYGH 71

Query: 68  CNALRQARALGDQLVVGVVSDAEIIANKGPPVTPLHERMIMVNAVKWVDEVISDAPYAIT 127
           CNALRQARALGDQLVVGVVSDAEI ANKGPPVTPL+ERMIMV+ VKWVDEVI DAPYAIT
Sbjct: 72  CNALRQARALGDQLVVGVVSDAEITANKGPPVTPLNERMIMVSGVKWVDEVIPDAPYAIT 131

Query: 128 KDFMKKLFDEYNIDYIIHGDDPCVLPDGTDAYELAKKAGRYKQIKRTEGVSSTDIVGRML 187
           +DFMKKLFDEYNIDYIIHGDDPC+LPDGTDAY LAKKAGRYKQIKRTEGVSSTDIVGRML
Sbjct: 132 EDFMKKLFDEYNIDYIIHGDDPCILPDGTDAYALAKKAGRYKQIKRTEGVSSTDIVGRML 191

Query: 188 LCVRERSISDSHNHSSLQRQFSHGHNQKVEERGSG-GTRVSHFLPTSRRIVQFSNGKGPG 246
           LCVRERS+SDSHNHSSLQRQFSHGH+QK E+ GSG GTR+SHFLPTSRRIVQFSNGKGPG
Sbjct: 192 LCVRERSLSDSHNHSSLQRQFSHGHSQKFEDGGSGSGTRISHFLPTSRRIVQFSNGKGPG 251

Query: 247 PDARIIYIDGAFDLFHAGHVEILRIARGLGDFLLVGIHNDQTV 289
           PDARI+YIDGAFDLFHAGHVEIL++ARGLGDFLLVGIH DQTV
Sbjct: 252 PDARIVYIDGAFDLFHAGHVEILKLARGLGDFLLVGIHTDQTV 294

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449497225|ref|XP_004160346.1| PREDICTED: ethanolamine-phosphate cytidylyltransferase-like [Cucumis sativus]

 Score =  492 bits (1266), Expect = e-136,   Method: Compositional matrix adjust.
 Identities = 241/302 (79%), Positives = 265/302 (87%), Gaps = 3/302 (0%)

Query: 3   SEGKEQSARILATCLIAGAVMVAGFSLLTLYLAAPNDRWLQWTRKKKKPVRVYMDGCFDM 62
           SE  ++ AR +ATCLI G  +V G S+L L+  AP+   L+  R+KKKPVRVYMDGCFDM
Sbjct: 19  SENTQRWARFVATCLIGG--LVIGISVLGLHFGAPHQPSLRIWRRKKKPVRVYMDGCFDM 76

Query: 63  MHYGHCNALRQARALGDQLVVGVVSDAEIIANKGPPVTPLHERMIMVNAVKWVDEVISDA 122
           MHYGHCNALRQARALGDQLVVGVVSD+EIIANKGPPVTPL+ERMIMVNAVKWVDEVI +A
Sbjct: 77  MHYGHCNALRQARALGDQLVVGVVSDSEIIANKGPPVTPLNERMIMVNAVKWVDEVIPNA 136

Query: 123 PYAITKDFMKKLFDEYNIDYIIHGDDPCVLPDGTDAYELAKKAGRYKQIKRTEGVSSTDI 182
           PYAIT++FM+KLFDEY IDYIIHGDDPCVLPDGTDAY LAKKAGRYKQIKRTEGVSSTDI
Sbjct: 137 PYAITEEFMRKLFDEYKIDYIIHGDDPCVLPDGTDAYALAKKAGRYKQIKRTEGVSSTDI 196

Query: 183 VGRMLLCVRERSISDSHNHSSLQRQFSHGHNQKVEERGSG-GTRVSHFLPTSRRIVQFSN 241
           VGRMLLCVRERSISD+ NHSSLQRQFSHGH+QK+++ GSG GTRVSHFLPTSRRIVQFSN
Sbjct: 197 VGRMLLCVRERSISDNQNHSSLQRQFSHGHSQKLDDGGSGTGTRVSHFLPTSRRIVQFSN 256

Query: 242 GKGPGPDARIIYIDGAFDLFHAGHVEILRIARGLGDFLLVGIHNDQTVRLKNPSVSFILL 301
           GKGPGPDARIIYIDGAFDLFHAGHVEIL+ AR +GDFLLVGIH D TV +       + L
Sbjct: 257 GKGPGPDARIIYIDGAFDLFHAGHVEILKHARSMGDFLLVGIHTDLTVSIAGLYYVILQL 316

Query: 302 DF 303
            F
Sbjct: 317 GF 318

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449439781|ref|XP_004137664.1| PREDICTED: ethanolamine-phosphate cytidylyltransferase-like [Cucumis sativus]

 Score =  491 bits (1263), Expect = e-136,   Method: Compositional matrix adjust.
 Identities = 239/288 (82%), Positives = 261/288 (90%), Gaps = 3/288 (1%)

Query: 3   SEGKEQSARILATCLIAGAVMVAGFSLLTLYLAAPNDRWLQWTRKKKKPVRVYMDGCFDM 62
           SE  ++ AR +ATCLI G  +V G S+L L+  AP+   L+  R+KKKPVRVYMDGCFDM
Sbjct: 19  SENTQRWARFVATCLIGG--LVIGISVLGLHFGAPHQPSLRIWRRKKKPVRVYMDGCFDM 76

Query: 63  MHYGHCNALRQARALGDQLVVGVVSDAEIIANKGPPVTPLHERMIMVNAVKWVDEVISDA 122
           MHYGHCNALRQARALGDQLVVGVVSD+EIIANKGPPVTPL+ERMIMVNAVKWVDEVI +A
Sbjct: 77  MHYGHCNALRQARALGDQLVVGVVSDSEIIANKGPPVTPLNERMIMVNAVKWVDEVIPNA 136

Query: 123 PYAITKDFMKKLFDEYNIDYIIHGDDPCVLPDGTDAYELAKKAGRYKQIKRTEGVSSTDI 182
           PYAIT++FM+KLFDEY IDYIIHGDDPCVLPDGTDAY LAKKAGRYKQIKRTEGVSSTDI
Sbjct: 137 PYAITEEFMRKLFDEYKIDYIIHGDDPCVLPDGTDAYALAKKAGRYKQIKRTEGVSSTDI 196

Query: 183 VGRMLLCVRERSISDSHNHSSLQRQFSHGHNQKVEERGSG-GTRVSHFLPTSRRIVQFSN 241
           VGRMLLCVRERSISD+ NHSSLQRQFSHGH+QK+++ GSG GTRVSHFLPTSRRIVQFSN
Sbjct: 197 VGRMLLCVRERSISDNQNHSSLQRQFSHGHSQKLDDGGSGTGTRVSHFLPTSRRIVQFSN 256

Query: 242 GKGPGPDARIIYIDGAFDLFHAGHVEILRIARGLGDFLLVGIHNDQTV 289
           GKGPGPDARIIYIDGAFDLFHAGHVEIL+ AR +GDFLLVGIH D TV
Sbjct: 257 GKGPGPDARIIYIDGAFDLFHAGHVEILKHARSMGDFLLVGIHTDLTV 304

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224140661|ref|XP_002323699.1| predicted protein [Populus trichocarpa] gi|222868329|gb|EEF05460.1| predicted protein [Populus trichocarpa]

 Score =  478 bits (1229), Expect = e-132,   Method: Compositional matrix adjust.
 Identities = 239/291 (82%), Positives = 255/291 (87%), Gaps = 10/291 (3%)

Query: 8   QSARILATCLIAGAVMVAGFSLLTLYLAAPNDRWLQWT-----RKKKKPVRVYMDGCFDM 62
           +  +I+ATCL    V+  G SLL LYL +  +    W+     +KKKKP+RVYMDGCFDM
Sbjct: 19  EKVKIVATCL----VVAVGVSLLGLYLKSGAEWRSNWSLSLNKKKKKKPIRVYMDGCFDM 74

Query: 63  MHYGHCNALRQARALGDQLVVGVVSDAEIIANKGPPVTPLHERMIMVNAVKWVDEVISDA 122
           MHYGHCNALRQARALGDQLVVGVVSD EIIANKGPPVTP+HERMIMVNAVKWVDEVISDA
Sbjct: 75  MHYGHCNALRQARALGDQLVVGVVSDDEIIANKGPPVTPVHERMIMVNAVKWVDEVISDA 134

Query: 123 PYAITKDFMKKLFDEYNIDYIIHGDDPCVLPDGTDAYELAKKAGRYKQIKRTEGVSSTDI 182
           PYAIT+DFMKKLFDEYNIDYIIHGDDPCVLPDGTDAY LAKKAGRYKQIKRTEGVSSTDI
Sbjct: 135 PYAITEDFMKKLFDEYNIDYIIHGDDPCVLPDGTDAYALAKKAGRYKQIKRTEGVSSTDI 194

Query: 183 VGRMLLCVRERSISDSHNHSSLQRQFSHGHNQKVEERGSG-GTRVSHFLPTSRRIVQFSN 241
           VGRMLLC RERSISDSHN SSLQRQFSHGH+QK E+ GSG GTRVSHFLPTSRRIVQFSN
Sbjct: 195 VGRMLLCTRERSISDSHNQSSLQRQFSHGHSQKFEDGGSGSGTRVSHFLPTSRRIVQFSN 254

Query: 242 GKGPGPDARIIYIDGAFDLFHAGHVEILRIARGLGDFLLVGIHNDQTVRLK 292
            KGPG DARI+YIDGAFDLFHAGHVEIL++AR LGDFLLVGIHND  V  K
Sbjct: 255 DKGPGQDARIVYIDGAFDLFHAGHVEILKLARALGDFLLVGIHNDHIVSSK 305

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|239056198|emb|CAQ58636.1| Ethanolamine-phosphate cytidylyltransferase [Vitis vinifera]

 Score =  476 bits (1224), Expect = e-132,   Method: Compositional matrix adjust.
 Identities = 232/286 (81%), Positives = 255/286 (89%), Gaps = 7/286 (2%)

Query: 8   QSARILATCLIAGAVMVAGFSLLTLYLAAPNDRWLQWTRKKKKPVRVYMDGCFDMMHYGH 67
           QS+++LATCLI G V+  G S+L  YLA P  R L W R+KKKP+RVYMDGCFDMMHYGH
Sbjct: 15  QSSKLLATCLIGGVVL--GVSVLGFYLAFPPPRQLSW-RRKKKPIRVYMDGCFDMMHYGH 71

Query: 68  CNALRQARALGDQLVVGVVSDAEIIANKGPPVTPLHERMIMVNAVKWVDEVISDAPYAIT 127
           CNALRQARALGDQLVVGVVSDAEI ANKGPPVTPL+ERMIMV+ VKWVDEVI DAPYAIT
Sbjct: 72  CNALRQARALGDQLVVGVVSDAEITANKGPPVTPLNERMIMVSGVKWVDEVIPDAPYAIT 131

Query: 128 KDFMKKLFDEYNIDYIIHGDDPCVLPDGTDAYELAKKAGRYKQIKRTEGVSSTDIVGRML 187
           +DFMKKLFDEYNIDYIIHGDDPC+LPDGTDAY LAKKAGRYKQIKRTEGVSSTDIVGRML
Sbjct: 132 EDFMKKLFDEYNIDYIIHGDDPCILPDGTDAYALAKKAGRYKQIKRTEGVSSTDIVGRML 191

Query: 188 LCVRERSISDSHNHSSLQRQFSHGHNQKVEERGSG-GTRVSHFLPTSRRI---VQFSNGK 243
           LCVRERS+SDSHNHSSLQRQFSHGH+QK E+ GSG GTR+SHFLP+ + +   +     +
Sbjct: 192 LCVRERSLSDSHNHSSLQRQFSHGHSQKFEDGGSGSGTRISHFLPSGQFLTIHLFLFWLQ 251

Query: 244 GPGPDARIIYIDGAFDLFHAGHVEILRIARGLGDFLLVGIHNDQTV 289
           GPGPDARI+YIDGAFDLFHAGHVEIL++ARGLGDFLLVGIH DQTV
Sbjct: 252 GPGPDARIVYIDGAFDLFHAGHVEILKLARGLGDFLLVGIHTDQTV 297

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255557903|ref|XP_002519980.1| Ethanolamine-phosphate cytidylyltransferase, putative [Ricinus communis] gi|223540744|gb|EEF42304.1| Ethanolamine-phosphate cytidylyltransferase, putative [Ricinus communis]

 Score =  473 bits (1217), Expect = e-131,   Method: Compositional matrix adjust.
 Identities = 239/293 (81%), Positives = 257/293 (87%), Gaps = 11/293 (3%)

Query: 5   GKEQSARILATCLIAGAVMVA-GFSLLTLYLAAPNDRWLQWTR-------KKKKPVRVYM 56
           G + +++   T ++A  + VA G SLL LYL        QW R       KKKK +RVYM
Sbjct: 2   GLDANSQSDKTKMVATLLAVAIGVSLLGLYLKG--GELNQWRRIKQKKKKKKKKNIRVYM 59

Query: 57  DGCFDMMHYGHCNALRQARALGDQLVVGVVSDAEIIANKGPPVTPLHERMIMVNAVKWVD 116
           DGCFDMMHYGHCNALRQARALGD+LVVGVVSDAEIIANKGPPVTPLHERMIMVNAVKWVD
Sbjct: 60  DGCFDMMHYGHCNALRQARALGDELVVGVVSDAEIIANKGPPVTPLHERMIMVNAVKWVD 119

Query: 117 EVISDAPYAITKDFMKKLFDEYNIDYIIHGDDPCVLPDGTDAYELAKKAGRYKQIKRTEG 176
           EVI DAPYAIT++FMKKLF+EYNIDYIIHGDDPCVLPDGTDAY LAKKAGRYKQIKRTEG
Sbjct: 120 EVIPDAPYAITEEFMKKLFEEYNIDYIIHGDDPCVLPDGTDAYALAKKAGRYKQIKRTEG 179

Query: 177 VSSTDIVGRMLLCVRERSISDSHNHSSLQRQFSHGHNQKVEERGSGGTRVSHFLPTSRRI 236
           VSSTDIVGRMLLC RERSISDSH +SSLQRQFSHGH+QK E+ G+ GTRVSHFLPTSRRI
Sbjct: 180 VSSTDIVGRMLLCTRERSISDSHKNSSLQRQFSHGHSQKFEDGGT-GTRVSHFLPTSRRI 238

Query: 237 VQFSNGKGPGPDARIIYIDGAFDLFHAGHVEILRIARGLGDFLLVGIHNDQTV 289
           VQFSNGKGPGPDARI+YIDGAFDLFHAGHVEILR+ARGLGDFLLVGIHNDQTV
Sbjct: 239 VQFSNGKGPGPDARIVYIDGAFDLFHAGHVEILRVARGLGDFLLVGIHNDQTV 291

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|15224925|ref|NP_181401.1| ethanolamine-phosphate cytidylyltransferase [Arabidopsis thaliana] gi|3786005|gb|AAC67351.1| putative phospholipid cytidylyltransferase [Arabidopsis thaliana] gi|20260170|gb|AAM12983.1| putative phospholipid cytidylyltransferase [Arabidopsis thaliana] gi|22136258|gb|AAM91207.1| putative phospholipid cytidylyltransferase [Arabidopsis thaliana] gi|330254474|gb|AEC09568.1| ethanolamine-phosphate cytidylyltransferase [Arabidopsis thaliana]

 Score =  472 bits (1214), Expect = e-130,   Method: Compositional matrix adjust.
 Identities = 235/294 (79%), Positives = 248/294 (84%), Gaps = 9/294 (3%)

Query: 8   QSARILATCLIAGAVMVAGFSLLTLYLAAPNDRWLQ------W-TRKKKKPVRVYMDGCF 60
           +  +I+ +C++ GA    G S L L+L       L       W   +K+KPVRVYMDGCF
Sbjct: 4   EKEKIVGSCIVGGAAFAVGASFLHLFLKGELPLGLGLGLSCPWRILRKRKPVRVYMDGCF 63

Query: 61  DMMHYGHCNALRQARALGDQLVVGVVSDAEIIANKGPPVTPLHERMIMVNAVKWVDEVIS 120
           DMMHYGHCNALRQARALGDQLVVGVVSD EIIANKGPPVTPLHERM MV AVKWVDEVIS
Sbjct: 64  DMMHYGHCNALRQARALGDQLVVGVVSDEEIIANKGPPVTPLHERMTMVKAVKWVDEVIS 123

Query: 121 DAPYAITKDFMKKLFDEYNIDYIIHGDDPCVLPDGTDAYELAKKAGRYKQIKRTEGVSST 180
           DAPYAIT+DFMKKLFDEY IDYIIHGDDPCVLPDGTDAY LAKKAGRYKQIKRTEGVSST
Sbjct: 124 DAPYAITEDFMKKLFDEYQIDYIIHGDDPCVLPDGTDAYALAKKAGRYKQIKRTEGVSST 183

Query: 181 DIVGRMLLCVRERSISDSHNHSSLQRQFSHGHNQKVEERG--SGGTRVSHFLPTSRRIVQ 238
           DIVGRMLLCVRERSISD+H+ SSLQRQFSHGH+    E G  S GTRVSHFLPTSRRIVQ
Sbjct: 184 DIVGRMLLCVRERSISDTHSRSSLQRQFSHGHSSPKFEDGASSAGTRVSHFLPTSRRIVQ 243

Query: 239 FSNGKGPGPDARIIYIDGAFDLFHAGHVEILRIARGLGDFLLVGIHNDQTVRLK 292
           FSNGKGPGPDARIIYIDGAFDLFHAGHVEILR AR LGDFLLVGIHNDQTV  K
Sbjct: 244 FSNGKGPGPDARIIYIDGAFDLFHAGHVEILRRARELGDFLLVGIHNDQTVSAK 297

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297823753|ref|XP_002879759.1| hypothetical protein ARALYDRAFT_903103 [Arabidopsis lyrata subsp. lyrata] gi|297325598|gb|EFH56018.1| hypothetical protein ARALYDRAFT_903103 [Arabidopsis lyrata subsp. lyrata]

 Score =  471 bits (1213), Expect = e-130,   Method: Compositional matrix adjust.
 Identities = 235/294 (79%), Positives = 248/294 (84%), Gaps = 9/294 (3%)

Query: 8   QSARILATCLIAGAVMVAGFSLLTLYLAAPNDRWLQ------W-TRKKKKPVRVYMDGCF 60
           +  +I+ +C++ GA    G S L L+L       L       W   +K+KPVRVYMDGCF
Sbjct: 4   EKEKIVGSCIVGGAAFAVGASFLHLFLKGELPLGLGLGLSCPWRILRKRKPVRVYMDGCF 63

Query: 61  DMMHYGHCNALRQARALGDQLVVGVVSDAEIIANKGPPVTPLHERMIMVNAVKWVDEVIS 120
           DMMHYGHCNALRQARALGDQLVVGVVSD EIIANKGPPVTPLHERM MV AVKWVDEVIS
Sbjct: 64  DMMHYGHCNALRQARALGDQLVVGVVSDEEIIANKGPPVTPLHERMTMVKAVKWVDEVIS 123

Query: 121 DAPYAITKDFMKKLFDEYNIDYIIHGDDPCVLPDGTDAYELAKKAGRYKQIKRTEGVSST 180
           DAPYAIT+DFMKKLFDEY IDYIIHGDDPCVLPDGTDAY LAKKAGRYKQIKRTEGVSST
Sbjct: 124 DAPYAITEDFMKKLFDEYQIDYIIHGDDPCVLPDGTDAYALAKKAGRYKQIKRTEGVSST 183

Query: 181 DIVGRMLLCVRERSISDSHNHSSLQRQFSHGHNQKVEERG--SGGTRVSHFLPTSRRIVQ 238
           DIVGRMLLCVRERSISD+H+ SSLQRQFSHGH+    E G  S GTRVSHFLPTSRRIVQ
Sbjct: 184 DIVGRMLLCVRERSISDTHSRSSLQRQFSHGHSSPKFEDGASSAGTRVSHFLPTSRRIVQ 243

Query: 239 FSNGKGPGPDARIIYIDGAFDLFHAGHVEILRIARGLGDFLLVGIHNDQTVRLK 292
           FSNGKGPGPDARIIYIDGAFDLFHAGHVEILR AR LGDFLLVGIHNDQTV  K
Sbjct: 244 FSNGKGPGPDARIIYIDGAFDLFHAGHVEILRRARELGDFLLVGIHNDQTVSAK 297

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224069032|ref|XP_002326258.1| predicted protein [Populus trichocarpa] gi|222833451|gb|EEE71928.1| predicted protein [Populus trichocarpa]

 Score =  460 bits (1184), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 221/238 (92%), Positives = 227/238 (95%), Gaps = 1/238 (0%)

Query: 56  MDGCFDMMHYGHCNALRQARALGDQLVVGVVSDAEIIANKGPPVTPLHERMIMVNAVKWV 115
           MDGCFDMMHYGHCNALRQARALGDQLVVGVVSDAEIIANKGPPVTPLHERMIMVNAVKWV
Sbjct: 1   MDGCFDMMHYGHCNALRQARALGDQLVVGVVSDAEIIANKGPPVTPLHERMIMVNAVKWV 60

Query: 116 DEVISDAPYAITKDFMKKLFDEYNIDYIIHGDDPCVLPDGTDAYELAKKAGRYKQIKRTE 175
           DEVISDAPYAIT++FMKKLFDEYNIDYIIHGDDPCVLPDGTDAY LAKKAGRYKQIKRTE
Sbjct: 61  DEVISDAPYAITEEFMKKLFDEYNIDYIIHGDDPCVLPDGTDAYALAKKAGRYKQIKRTE 120

Query: 176 GVSSTDIVGRMLLCVRERSISDSHNHSSLQRQFSHGHNQKVEERGSG-GTRVSHFLPTSR 234
           GVSSTDIVGRMLLC RERSISDSHNHSSLQRQFSHG++QK E  GSG GTRVSHFLPTSR
Sbjct: 121 GVSSTDIVGRMLLCTRERSISDSHNHSSLQRQFSHGNSQKFEAGGSGTGTRVSHFLPTSR 180

Query: 235 RIVQFSNGKGPGPDARIIYIDGAFDLFHAGHVEILRIARGLGDFLLVGIHNDQTVRLK 292
           RIVQFSNGKGPG DARI+YIDGAFDLFHAGHVEILR+AR LGDFLLVGIHNDQ V  K
Sbjct: 181 RIVQFSNGKGPGDDARIVYIDGAFDLFHAGHVEILRLARTLGDFLLVGIHNDQIVSAK 238

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|296085807|emb|CBI31131.3| unnamed protein product [Vitis vinifera]

 Score =  457 bits (1176), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 216/235 (91%), Positives = 227/235 (96%), Gaps = 1/235 (0%)

Query: 56  MDGCFDMMHYGHCNALRQARALGDQLVVGVVSDAEIIANKGPPVTPLHERMIMVNAVKWV 115
           MDGCFDMMHYGHCNALRQARALGDQLVVGVVSDAEI ANKGPPVTPL+ERMIMV+ VKWV
Sbjct: 1   MDGCFDMMHYGHCNALRQARALGDQLVVGVVSDAEITANKGPPVTPLNERMIMVSGVKWV 60

Query: 116 DEVISDAPYAITKDFMKKLFDEYNIDYIIHGDDPCVLPDGTDAYELAKKAGRYKQIKRTE 175
           DEVI DAPYAIT+DFMKKLFDEYNIDYIIHGDDPC+LPDGTDAY LAKKAGRYKQIKRTE
Sbjct: 61  DEVIPDAPYAITEDFMKKLFDEYNIDYIIHGDDPCILPDGTDAYALAKKAGRYKQIKRTE 120

Query: 176 GVSSTDIVGRMLLCVRERSISDSHNHSSLQRQFSHGHNQKVEERGSG-GTRVSHFLPTSR 234
           GVSSTDIVGRMLLCVRERS+SDSHNHSSLQRQFSHGH+QK E+ GSG GTR+SHFLPTSR
Sbjct: 121 GVSSTDIVGRMLLCVRERSLSDSHNHSSLQRQFSHGHSQKFEDGGSGSGTRISHFLPTSR 180

Query: 235 RIVQFSNGKGPGPDARIIYIDGAFDLFHAGHVEILRIARGLGDFLLVGIHNDQTV 289
           RIVQFSNGKGPGPDARI+YIDGAFDLFHAGHVEIL++ARGLGDFLLVGIH DQTV
Sbjct: 181 RIVQFSNGKGPGPDARIVYIDGAFDLFHAGHVEILKLARGLGDFLLVGIHTDQTV 235

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	307
TAIR|locus:2064123	421	PECT1 "phosphorylethanolamine	0.928	0.676	0.802	3.6e-121
DICTYBASE|DDB_G0270298	360	pctA "cytidylyltransferase dom	0.771	0.658	0.538	7.4e-66
FB|FBgn0032482	393	Pect "Phosphoethanolamine cyti	0.788	0.615	0.480	1.2e-60
UNIPROTKB|Q5EA75	389	PCYT2 "Ethanolamine-phosphate	0.768	0.606	0.481	3.6e-57
ZFIN|ZDB-GENE-041010-132	397	pcyt2 "phosphate cytidylyltran	0.755	0.584	0.475	4.6e-57
UNIPROTKB|Q99447	389	PCYT2 "Ethanolamine-phosphate	0.762	0.601	0.481	2e-56
UNIPROTKB|I3L1R7	367	PCYT2 "Ethanolamine-phosphate	0.762	0.637	0.481	2e-56
UNIPROTKB|F1PIT0	385	PCYT2 "Uncharacterized protein	0.762	0.607	0.473	1.8e-55
UNIPROTKB|F1PIT5	372	PCYT2 "Uncharacterized protein	0.762	0.629	0.473	1.8e-55
UNIPROTKB|F5H8B1	407	PCYT2 "Ethanolamine-phosphate	0.765	0.577	0.469	3.4e-54

TAIR|locus:2064123 PECT1 "phosphorylethanolamine cytidylyltransferase 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 1192 (424.7 bits), Expect = 3.6e-121, P = 3.6e-121
 Identities = 236/294 (80%), Positives = 249/294 (84%)

Query:     8 QSARILATCLIAGAVMVAGFSLLTLYLAA--PNDRWL----QWT-RKKKKPVRVYMDGCF 60
             +  +I+ +C++ GA    G S L L+L    P    L     W   +K+KPVRVYMDGCF
Sbjct:     4 EKEKIVGSCIVGGAAFAVGASFLHLFLKGELPLGLGLGLSCPWRILRKRKPVRVYMDGCF 63

Query:    61 DMMHYGHCNALRQARALGDQLVVGVVSDAEIIANKGPPVTPLHERMIMVNAVKWVDEVIS 120
             DMMHYGHCNALRQARALGDQLVVGVVSD EIIANKGPPVTPLHERM MV AVKWVDEVIS
Sbjct:    64 DMMHYGHCNALRQARALGDQLVVGVVSDEEIIANKGPPVTPLHERMTMVKAVKWVDEVIS 123

Query:   121 DAPYAITKDFMKKLFDEYNIDYIIHGDDPCVLPDGTDAYELAKKAGRYKQIKRTEGVSST 180
             DAPYAIT+DFMKKLFDEY IDYIIHGDDPCVLPDGTDAY LAKKAGRYKQIKRTEGVSST
Sbjct:   124 DAPYAITEDFMKKLFDEYQIDYIIHGDDPCVLPDGTDAYALAKKAGRYKQIKRTEGVSST 183

Query:   181 DIVGRMLLCVRERSISDSHNHSSLQRQFSHGHNQKVEERG--SGGTRVSHFLPTSRRIVQ 238
             DIVGRMLLCVRERSISD+H+ SSLQRQFSHGH+    E G  S GTRVSHFLPTSRRIVQ
Sbjct:   184 DIVGRMLLCVRERSISDTHSRSSLQRQFSHGHSSPKFEDGASSAGTRVSHFLPTSRRIVQ 243

Query:   239 FSNGKGPGPDARIIYIDGAFDLFHAGHVEILRIARGLGDFLLVGIHNDQTVRLK 292
             FSNGKGPGPDARIIYIDGAFDLFHAGHVEILR AR LGDFLLVGIHNDQTV  K
Sbjct:   244 FSNGKGPGPDARIIYIDGAFDLFHAGHVEILRRARELGDFLLVGIHNDQTVSAK 297

GO:0003824 "catalytic activity" evidence=IEA

GO:0004306 "ethanolamine-phosphate cytidylyltransferase activity" evidence=ISS;IMP

GO:0005634 "nucleus" evidence=ISM

GO:0009058 "biosynthetic process" evidence=IEA;ISS

GO:0016779 "nucleotidyltransferase activity" evidence=IEA

GO:0005739 "mitochondrion" evidence=IDA

GO:0006646 "phosphatidylethanolamine biosynthetic process" evidence=TAS

GO:0031307 "integral to mitochondrial outer membrane" evidence=IDA

DICTYBASE|DDB_G0270298 pctA "cytidylyltransferase domain-containing protein" [Dictyostelium discoideum (taxid:44689)]

 Score = 670 (240.9 bits), Expect = 7.4e-66, P = 7.4e-66
 Identities = 132/245 (53%), Positives = 168/245 (68%)

Query:    45 TRKKKKPVRVYMDGCFDMMHYGHCNALRQARALGDQLVVGVVSDAEIIANKGPPVTPLHE 104
             T   KKP+RVY+DGCFD+MH+GH NALRQAR LGD LVVGV +D EI  NKGPPV    E
Sbjct:     3 TTTNKKPIRVYVDGCFDLMHFGHANALRQARELGDILVVGVHTDEEIAKNKGPPVMNEQE 62

Query:   105 RMIMVNAVKWVDEVISDAPYAITKDFMKKLFDEYNIDYIIHGDDPCVLPDGTDAYELAKK 164
             R   V A KW DEV   APY +T++++    D  N D+ +HG+D  V  DG D YE  KK
Sbjct:    63 RYKAVRACKWADEVAEGAPYTLTEEYL----DSLNCDFCVHGEDISVGADGKDVYEGIKK 118

Query:   165 AGRYKQIKRTEGVSSTDIVGRMLLCVRERSISDSHNHSSLQRQFSHGHNQKVEERGSGGT 224
             +G+++ IKRTEGVS+T++VGRMLLC ++       N S  Q     G N  V  + S  T
Sbjct:   119 SGKFRFIKRTEGVSTTELVGRMLLCTKDHL----QNVSGEQTSPLGGVNPNVLHKQSPYT 174

Query:   225 RVSHFLPTSRRIVQFSNGKGPGPDARIIYIDGAFDLFHAGHVEILRIARGLGDFLLVGIH 284
              +SHFLPT+R+IVQFS G+ P P+ +IIY+DG FDLFH GH E L+ AR LGD+L+VG+H
Sbjct:   175 SLSHFLPTTRKIVQFSEGRSPKPNDKIIYMDGGFDLFHVGHTEALKQARALGDYLIVGVH 234

Query:   285 NDQTV 289
             +D+ V
Sbjct:   235 DDRVV 239

GO:0045335 "phagocytic vesicle" evidence=IDA

GO:0009058 "biosynthetic process" evidence=IEA

GO:0003824 "catalytic activity" evidence=IEA

GO:0004306 "ethanolamine-phosphate cytidylyltransferase activity" evidence=IEA;ISS

GO:0006646 "phosphatidylethanolamine biosynthetic process" evidence=IEA;ISS

GO:0016779 "nucleotidyltransferase activity" evidence=IEA

GO:0016740 "transferase activity" evidence=IEA

GO:0008654 "phospholipid biosynthetic process" evidence=IEA

GO:0006629 "lipid metabolic process" evidence=IEA

GO:0044351 "macropinocytosis" evidence=RCA

FB|FBgn0032482 Pect "Phosphoethanolamine cytidylyltransferase" [Drosophila melanogaster (taxid:7227)]

 Score = 621 (223.7 bits), Expect = 1.2e-60, P = 1.2e-60
 Identities = 123/256 (48%), Positives = 171/256 (66%)

Query:    44 WTRKKKKPVRVYMDGCFDMMHYGHCNALRQARALGDQLVVGVVSDAEIIANKGPPVTPLH 103
             ++ K++K VRV+ DGC+DM+H+GH N+LRQA+ALGD+++VG+ +D EI  +KGPPV    
Sbjct:    13 YSDKQRKDVRVWCDGCYDMVHFGHANSLRQAKALGDKVIVGIHTDEEITKHKGPPVFTEE 72

Query:   104 ERMIMVNAVKWVDEVISDAPYAITKDFMKKLFDEYNIDYIIHGDDPCVLPDGTDAYELAK 163
             ER+ MV  +KWVDEV+  APY  T D +    D+ N D+ +HGDD  +  +G D Y L K
Sbjct:    73 ERVKMVKGIKWVDEVVLGAPYVTTLDVL----DQNNCDFCVHGDDITMTAEGVDTYHLVK 128

Query:   164 KAGRYKQIKRTEGVSSTDIVGRMLLCVRERSISDSHNH------SSLQRQF-SH-GHNQK 215
              A RYK++KRT GVS+TD+VGRMLL  R      S  +      S L+RQ  SH G +  
Sbjct:   129 SANRYKEVKRTAGVSTTDLVGRMLLLTRNHFRQGSAEYDIEKEVSILKRQIKSHPGSSNM 188

Query:   216 VEERG--SGGTRVSHFLPTSRRIVQFSNGKGPGPDARIIYIDGAFDLFHAGHVEILRIAR 273
              ++    S  T  S FLPT+++I+QFS+GK P P  +I+Y+ GAFDLFH GH++ L  A+
Sbjct:   189 GQDSAAKSPWTGCSQFLPTTQKIIQFSDGKSPNPGDKIVYVAGAFDLFHVGHLDFLEKAK 248

Query:   274 GLGDFLLVGIHNDQTV 289
              LGD+L+VG+H D  V
Sbjct:   249 KLGDYLIVGLHTDPVV 264

GO:0004306 "ethanolamine-phosphate cytidylyltransferase activity" evidence=ISS

GO:0042439 "ethanolamine-containing compound metabolic process" evidence=NAS

GO:0009058 "biosynthetic process" evidence=IEA

UNIPROTKB|Q5EA75 PCYT2 "Ethanolamine-phosphate cytidylyltransferase" [Bos taurus (taxid:9913)]

 Score = 588 (212.0 bits), Expect = 3.6e-57, P = 3.6e-57
 Identities = 118/245 (48%), Positives = 161/245 (65%)

Query:    47 KKKKPVRVYMDGCFDMMHYGHCNALRQARALGDQLVVGVVSDAEIIANKGPPVTPLHERM 106
             + ++ VRV+ DGC+DM+HYGH N LRQARA+GD L+VGV +D EI  +KGPPV    ER 
Sbjct:    18 RARRAVRVWCDGCYDMVHYGHSNQLRQARAMGDHLIVGVHTDEEIAKHKGPPVFTQEERY 77

Query:   107 IMVNAVKWVDEVISDAPYAITKDFMKKLFDEYNIDYIIHGDDPCVLPDGTDAYELAKKAG 166
              MV A+KWVDEV+  APY  T + +    D+YN D+ +HG+D  +  DG D YE  K+AG
Sbjct:    78 KMVQAIKWVDEVVPAAPYVTTLETL----DKYNCDFCVHGNDITLTVDGRDTYEEVKQAG 133

Query:   167 RYKQIKRTEGVSSTDIVGRMLLCVRERSISDSHNHSSLQRQFSHGHNQKVEERGSGGTRV 226
             RY++ KRT+GVS+TD+VGRMLL  +      S   SS  R+++    +    R    T V
Sbjct:   134 RYRECKRTQGVSTTDLVGRMLLVTKAHH--SSQEMSSEYREYADSFGKCPGGRNPW-TGV 190

Query:   227 SHFLPTSRRIVQFSNGKGPGPDARIIYIDGAFDLFHAGHVEILRIARGLGD--FLLVGIH 284
             S FL TS++I+QF++GK P P   +IY+ GAFDLFH GHV+ L    GL +  +++ G+H
Sbjct:   191 SQFLQTSQKIIQFASGKEPQPGETVIYVAGAFDLFHIGHVDFLEKVYGLAERPYVIAGLH 250

Query:   285 NDQTV 289
              DQ V
Sbjct:   251 FDQEV 255

GO:0006646 "phosphatidylethanolamine biosynthetic process" evidence=IEA

GO:0004306 "ethanolamine-phosphate cytidylyltransferase activity" evidence=IEA

ZFIN|ZDB-GENE-041010-132 pcyt2 "phosphate cytidylyltransferase 2, ethanolamine" [Danio rerio (taxid:7955)]

 Score = 587 (211.7 bits), Expect = 4.6e-57, P = 4.6e-57
 Identities = 118/248 (47%), Positives = 164/248 (66%)

Query:    47 KKKKPVRVYMDGCFDMMHYGHCNALRQARALGDQLVVGVVSDAEIIANKGPPVTPLHERM 106
             K+K+ +RV+ DGC+DM+HYGH N LRQA+A+GD LVVGV +D EI  +KGPPV    ER 
Sbjct:    26 KRKRVIRVWCDGCYDMVHYGHSNQLRQAKAMGDYLVVGVHTDEEIAKHKGPPVFTQAERY 85

Query:   107 IMVNAVKWVDEVISDAPYAITKDFMKKLFDEYNIDYIIHGDDPCVLPDGTDAYELAKKAG 166
              M+ A+KWVDE++  APY  T + +    D+YN D+ +HGDD  +  DG D Y+  K+ G
Sbjct:    86 KMIRAIKWVDEIVEGAPYVTTLETL----DKYNCDFCVHGDDITLTVDGKDTYDEVKRTG 141

Query:   167 RYKQIKRTEGVSSTDIVGRMLLCVRERSISDSHNHSSLQRQFSHGHNQKVEE--RG-SGG 223
             RY++ KRT+GVS+TD+VGRMLL      ++ +H HS++       H     +  +G S  
Sbjct:   142 RYRECKRTQGVSTTDLVGRMLL------LTKAH-HSNIDNAAYQVHTDNFGKGPKGHSPW 194

Query:   224 TRVSHFLPTSRRIVQFSNGKGPGPDARIIYIDGAFDLFHAGHVEILRIARGLGD--FLLV 281
             T VS FL TS++I+QF++GK P P   IIY+ GAFDLFH GHV+ L    G  +  +++V
Sbjct:   195 TGVSQFLQTSQKIIQFASGKEPQPGDTIIYVAGAFDLFHIGHVDFLETVHGQAEKPYVIV 254

Query:   282 GIHNDQTV 289
             G+H DQ V
Sbjct:   255 GLHFDQEV 262

GO:0003824 "catalytic activity" evidence=IEA

GO:0009058 "biosynthetic process" evidence=IEA

GO:0005575 "cellular_component" evidence=ND

UNIPROTKB|Q99447 PCYT2 "Ethanolamine-phosphate cytidylyltransferase" [Homo sapiens (taxid:9606)]

 Score = 581 (209.6 bits), Expect = 2.0e-56, P = 2.0e-56
 Identities = 117/243 (48%), Positives = 159/243 (65%)

Query:    49 KKPVRVYMDGCFDMMHYGHCNALRQARALGDQLVVGVVSDAEIIANKGPPVTPLHERMIM 108
             ++ VRV+ DGC+DM+HYGH N LRQARA+GD L+VGV +D EI  +KGPPV    ER  M
Sbjct:    20 RRAVRVWCDGCYDMVHYGHSNQLRQARAMGDYLIVGVHTDEEIAKHKGPPVFTQEERYKM 79

Query:   109 VNAVKWVDEVISDAPYAITKDFMKKLFDEYNIDYIIHGDDPCVLPDGTDAYELAKKAGRY 168
             V A+KWVDEV+  APY  T + +    D+YN D+ +HG+D  +  DG D YE  K+AGRY
Sbjct:    80 VQAIKWVDEVVPAAPYVTTLETL----DKYNCDFCVHGNDITLTVDGRDTYEEVKQAGRY 135

Query:   169 KQIKRTEGVSSTDIVGRMLLCVRERSISDSHNHSSLQRQFSHGHNQKVEERGSGGTRVSH 228
             ++ KRT+GVS+TD+VGRMLL  +      S   SS  R+++    +    R    T VS 
Sbjct:   136 RECKRTQGVSTTDLVGRMLLVTKAHH--SSQEMSSEYREYADSFGKCPGGRNPW-TGVSQ 192

Query:   229 FLPTSRRIVQFSNGKGPGPDARIIYIDGAFDLFHAGHVEILRIARGLGD--FLLVGIHND 286
             FL TS++I+QF++GK P P   +IY+ GAFDLFH GHV+ L     L +  +++ G+H D
Sbjct:   193 FLQTSQKIIQFASGKEPQPGETVIYVAGAFDLFHIGHVDFLEKVHRLAERPYIIAGLHFD 252

Query:   287 QTV 289
             Q V
Sbjct:   253 QEV 255

GO:0006646 "phosphatidylethanolamine biosynthetic process" evidence=IEA;TAS

GO:0008654 "phospholipid biosynthetic process" evidence=TAS

GO:0005575 "cellular_component" evidence=ND

GO:0004306 "ethanolamine-phosphate cytidylyltransferase activity" evidence=TAS

GO:0005789 "endoplasmic reticulum membrane" evidence=TAS

GO:0006644 "phospholipid metabolic process" evidence=TAS

GO:0044281 "small molecule metabolic process" evidence=TAS

GO:0046474 "glycerophospholipid biosynthetic process" evidence=TAS

UNIPROTKB|I3L1R7 PCYT2 "Ethanolamine-phosphate cytidylyltransferase" [Homo sapiens (taxid:9606)]

 Score = 581 (209.6 bits), Expect = 2.0e-56, P = 2.0e-56
 Identities = 117/243 (48%), Positives = 159/243 (65%)

Query:    49 KKPVRVYMDGCFDMMHYGHCNALRQARALGDQLVVGVVSDAEIIANKGPPVTPLHERMIM 108
             ++ VRV+ DGC+DM+HYGH N LRQARA+GD L+VGV +D EI  +KGPPV    ER  M
Sbjct:    20 RRAVRVWCDGCYDMVHYGHSNQLRQARAMGDYLIVGVHTDEEIAKHKGPPVFTQEERYKM 79

Query:   109 VNAVKWVDEVISDAPYAITKDFMKKLFDEYNIDYIIHGDDPCVLPDGTDAYELAKKAGRY 168
             V A+KWVDEV+  APY  T + +    D+YN D+ +HG+D  +  DG D YE  K+AGRY
Sbjct:    80 VQAIKWVDEVVPAAPYVTTLETL----DKYNCDFCVHGNDITLTVDGRDTYEEVKQAGRY 135

Query:   169 KQIKRTEGVSSTDIVGRMLLCVRERSISDSHNHSSLQRQFSHGHNQKVEERGSGGTRVSH 228
             ++ KRT+GVS+TD+VGRMLL  +      S   SS  R+++    +    R    T VS 
Sbjct:   136 RECKRTQGVSTTDLVGRMLLVTKAHH--SSQEMSSEYREYADSFGKCPGGRNPW-TGVSQ 192

Query:   229 FLPTSRRIVQFSNGKGPGPDARIIYIDGAFDLFHAGHVEILRIARGLGD--FLLVGIHND 286
             FL TS++I+QF++GK P P   +IY+ GAFDLFH GHV+ L     L +  +++ G+H D
Sbjct:   193 FLQTSQKIIQFASGKEPQPGETVIYVAGAFDLFHIGHVDFLEKVHRLAERPYIIAGLHFD 252

Query:   287 QTV 289
             Q V
Sbjct:   253 QEV 255

GO:0003824 "catalytic activity" evidence=IEA

GO:0009058 "biosynthetic process" evidence=IEA

UNIPROTKB|F1PIT0 PCYT2 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 572 (206.4 bits), Expect = 1.8e-55, P = 1.8e-55
 Identities = 115/243 (47%), Positives = 158/243 (65%)

Query:    49 KKPVRVYMDGCFDMMHYGHCNALRQARALGDQLVVGVVSDAEIIANKGPPVTPLHERMIM 108
             ++ VRV+ DGC+DM+HYGH N LRQARA+GD L+VGV +D EI  +KGPPV    ER  M
Sbjct:    20 RRAVRVWCDGCYDMVHYGHSNQLRQARAMGDYLIVGVHTDEEISKHKGPPVFTQEERYKM 79

Query:   109 VNAVKWVDEVISDAPYAITKDFMKKLFDEYNIDYIIHGDDPCVLPDGTDAYELAKKAGRY 168
             V A+KWVDEV+  APY  T + +    D+Y+ D+ +HG+D  +  DG D YE  K AGRY
Sbjct:    80 VRAIKWVDEVVPAAPYVTTLETL----DKYSCDFCVHGNDITLTVDGRDTYEEVKAAGRY 135

Query:   169 KQIKRTEGVSSTDIVGRMLLCVRERSISDSHNHSSLQRQFSHGHNQKVEERGSGGTRVSH 228
             ++ +RT+GVS+TD+VGRMLL  +          SS  R+++    +    R    T VS 
Sbjct:   136 RECRRTQGVSTTDLVGRMLLVTKAHH--SGQEISSEYREYADSFGKCPGGRNPW-TGVSQ 192

Query:   229 FLPTSRRIVQFSNGKGPGPDARIIYIDGAFDLFHAGHVEILRIARGLGD--FLLVGIHND 286
             FL TS++I+QF++GK P P   +IY+ GAFDLFH GHV+ L    GL +  +++ G+H D
Sbjct:   193 FLQTSQKIIQFASGKEPQPGETVIYVAGAFDLFHIGHVDFLEKVHGLAERPYVIAGLHFD 252

Query:   287 QTV 289
             Q V
Sbjct:   253 QEV 255

GO:0009058 "biosynthetic process" evidence=IEA

GO:0003824 "catalytic activity" evidence=IEA

UNIPROTKB|F1PIT5 PCYT2 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 572 (206.4 bits), Expect = 1.8e-55, P = 1.8e-55
 Identities = 115/243 (47%), Positives = 158/243 (65%)

Query:    49 KKPVRVYMDGCFDMMHYGHCNALRQARALGDQLVVGVVSDAEIIANKGPPVTPLHERMIM 108
             ++ VRV+ DGC+DM+HYGH N LRQARA+GD L+VGV +D EI  +KGPPV    ER  M
Sbjct:    20 RRAVRVWCDGCYDMVHYGHSNQLRQARAMGDYLIVGVHTDEEISKHKGPPVFTQEERYKM 79

Query:   109 VNAVKWVDEVISDAPYAITKDFMKKLFDEYNIDYIIHGDDPCVLPDGTDAYELAKKAGRY 168
             V A+KWVDEV+  APY  T + +    D+Y+ D+ +HG+D  +  DG D YE  K AGRY
Sbjct:    80 VRAIKWVDEVVPAAPYVTTLETL----DKYSCDFCVHGNDITLTVDGRDTYEEVKAAGRY 135

Query:   169 KQIKRTEGVSSTDIVGRMLLCVRERSISDSHNHSSLQRQFSHGHNQKVEERGSGGTRVSH 228
             ++ +RT+GVS+TD+VGRMLL  +          SS  R+++    +    R    T VS 
Sbjct:   136 RECRRTQGVSTTDLVGRMLLVTKAHH--SGQEISSEYREYADSFGKCPGGRNPW-TGVSQ 192

Query:   229 FLPTSRRIVQFSNGKGPGPDARIIYIDGAFDLFHAGHVEILRIARGLGD--FLLVGIHND 286
             FL TS++I+QF++GK P P   +IY+ GAFDLFH GHV+ L    GL +  +++ G+H D
Sbjct:   193 FLQTSQKIIQFASGKEPQPGETVIYVAGAFDLFHIGHVDFLEKVHGLAERPYVIAGLHFD 252

Query:   287 QTV 289
             Q V
Sbjct:   253 QEV 255

GO:0009058 "biosynthetic process" evidence=IEA

GO:0003824 "catalytic activity" evidence=IEA

UNIPROTKB|F5H8B1 PCYT2 "Ethanolamine-phosphate cytidylyltransferase" [Homo sapiens (taxid:9606)]

 Score = 560 (202.2 bits), Expect = 3.4e-54, P = 3.4e-54
 Identities = 122/260 (46%), Positives = 163/260 (62%)

Query:    49 KKPVRVYMDGCFDMMHYGHCNALRQARALGDQLVVGVVSDAEIIANKGPPVTPLHERMIM 108
             ++ VRV+ DGC+DM+HYGH N LRQARA+GD L+VGV +D EI  +KGPPV    ER  M
Sbjct:    20 RRAVRVWCDGCYDMVHYGHSNQLRQARAMGDYLIVGVHTDEEIAKHKGPPVFTQEERYKM 79

Query:   109 VNAVKWVDEVISDAPYAITKDFMKKLFDEYNIDYIIHGDDPCVLPDGTDAYELAKKAGRY 168
             V A+KWVDEV+  APY  T + +    D+YN D+ +HG+D  +  DG D YE  K+AGRY
Sbjct:    80 VQAIKWVDEVVPAAPYVTTLETL----DKYNCDFCVHGNDITLTVDGRDTYEEVKQAGRY 135

Query:   169 KQIKRTEGVSSTDIVGRMLLCVRERSISDSHNHSSLQRQF--SHG---H----NQKVEER 219
             ++ KRT+GVS+TD+VGRMLL  +      S   SS  R++  S G   H       +   
Sbjct:   136 RECKRTQGVSTTDLVGRMLLVTKAHH--SSQEMSSEYREYADSFGKPPHPIPAGDILSSE 193

Query:   220 GS----GG----TRVSHFLPTSRRIVQFSNGKGPGPDARIIYIDGAFDLFHAGHVEILRI 271
             G     GG    T VS FL TS++I+QF++GK P P   +IY+ GAFDLFH GHV+ L  
Sbjct:   194 GCSQCPGGRNPWTGVSQFLQTSQKIIQFASGKEPQPGETVIYVAGAFDLFHIGHVDFLEK 253

Query:   272 ARGLGD--FLLVGIHNDQTV 289
                L +  +++ G+H DQ V
Sbjct:   254 VHRLAERPYIIAGLHFDQEV 273

GO:0009058 "biosynthetic process" evidence=IEA

GO:0004306 "ethanolamine-phosphate cytidylyltransferase activity" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q55BZ4	PCY2_DICDI	2, ., 7, ., 7, ., 1, 4	0.5387	0.7719	0.6583	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	2.7.7	0.766
3rd Layer	2.7.7.39	LOW CONFIDENCE prediction!
4th Layer	2.7.7.14	0.824

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	307
PLN02406	418	PLN02406, PLN02406, ethanolamine-phosphate cytidyl	0.0
PTZ00308	353	PTZ00308, PTZ00308, ethanolamine-phosphate cytidyl	1e-105
cd02174	150	cd02174, CCT, CTP:phosphocholine cytidylyltransfer	1e-82
COG0615	140	COG0615, TagD, Cytidylyltransferase [Cell envelope	8e-39
cd02173	152	cd02173, ECT, CTP:phosphoethanolamine cytidylyltra	2e-37
cd02170	136	cd02170, cytidylyltransferase, cytidylyltransferas	8e-35
PLN02413	294	PLN02413, PLN02413, choline-phosphate cytidylyltra	2e-33
PTZ00308	353	PTZ00308, PTZ00308, ethanolamine-phosphate cytidyl	7e-32
PLN02406	418	PLN02406, PLN02406, ethanolamine-phosphate cytidyl	9e-23
cd02173	152	cd02173, ECT, CTP:phosphoethanolamine cytidylyltra	3e-20
TIGR02199	144	TIGR02199, rfaE_dom_II, rfaE bifunctional protein,	6e-19
TIGR00125	66	TIGR00125, cyt_tran_rel, cytidyltransferase-like d	1e-17
COG2870	467	COG2870, RfaE, ADP-heptose synthase, bifunctional	3e-16
PRK11316	473	PRK11316, PRK11316, bifunctional heptose 7-phospha	2e-15
cd02171	129	cd02171, G3P_Cytidylyltransferase, glycerol-3-phos	4e-15
pfam01467	148	pfam01467, CTP_transf_2, Cytidylyltransferase	7e-14
cd02172	144	cd02172, RfaE_N, N-terminal domain of RfaE	2e-13
TIGR01518	125	TIGR01518, g3p_cytidyltrns, glycerol-3-phosphate c	3e-13
cd02174	150	cd02174, CCT, CTP:phosphocholine cytidylyltransfer	7e-10
TIGR02199	144	TIGR02199, rfaE_dom_II, rfaE bifunctional protein,	5e-09
TIGR00125	66	TIGR00125, cyt_tran_rel, cytidyltransferase-like d	6e-09
PRK00777	153	PRK00777, PRK00777, phosphopantetheine adenylyltra	7e-09
cd02170	136	cd02170, cytidylyltransferase, cytidylyltransferas	2e-08
COG0615	140	COG0615, TagD, Cytidylyltransferase [Cell envelope	6e-08
COG2870	467	COG2870, RfaE, ADP-heptose synthase, bifunctional	1e-07
PRK11316	473	PRK11316, PRK11316, bifunctional heptose 7-phospha	1e-07
cd02171	129	cd02171, G3P_Cytidylyltransferase, glycerol-3-phos	5e-07
cd02172	144	cd02172, RfaE_N, N-terminal domain of RfaE	7e-06
TIGR01518	125	TIGR01518, g3p_cytidyltrns, glycerol-3-phosphate c	2e-05
cd02039	143	cd02039, cytidylyltransferase_like, Cytidylyltrans	9e-05
TIGR01510	155	TIGR01510, coaD_prev_kdtB, pantetheine-phosphate a	1e-04
pfam01467	148	pfam01467, CTP_transf_2, Cytidylyltransferase	4e-04
COG0669	159	COG0669, CoaD, Phosphopantetheine adenylyltransfer	6e-04
PRK01170	322	PRK01170, PRK01170, phosphopantetheine adenylyltra	0.001
PLN02413	294	PLN02413, PLN02413, choline-phosphate cytidylyltra	0.002
COG1019	158	COG1019, COG1019, Predicted nucleotidyltransferase	0.002
PRK01170	322	PRK01170, PRK01170, phosphopantetheine adenylyltra	0.003

>gnl|CDD|215227 PLN02406, PLN02406, ethanolamine-phosphate cytidylyltransferase

 Score =  513 bits (1321), Expect = 0.0
 Identities = 231/291 (79%), Positives = 251/291 (86%), Gaps = 10/291 (3%)

Query: 8   QSARILATCLIAGAVMVAGFSLLTLYLA----APNDRW----LQWTRKKKKPVRVYMDGC 59
            SA+ +A+CLI G ++  G S+L L LA    +    W    +   +KKKKPVRVYMDGC
Sbjct: 4   SSAKYVASCLIGGLML--GASVLGLSLAGFGSSLPYAWPDLGIFKKKKKKKPVRVYMDGC 61

Query: 60  FDMMHYGHCNALRQARALGDQLVVGVVSDAEIIANKGPPVTPLHERMIMVNAVKWVDEVI 119
           FDMMHYGH NALRQARALGD+LVVGVVSD EIIANKGPPVTP+HERMIMV+ VKWVDEVI
Sbjct: 62  FDMMHYGHANALRQARALGDELVVGVVSDEEIIANKGPPVTPMHERMIMVSGVKWVDEVI 121

Query: 120 SDAPYAITKDFMKKLFDEYNIDYIIHGDDPCVLPDGTDAYELAKKAGRYKQIKRTEGVSS 179
            DAPYAIT++FM KLF+EYNIDYIIHGDDPC+LPDGTDAY LAKKAGRYKQIKRTEGVSS
Sbjct: 122 PDAPYAITEEFMNKLFNEYNIDYIIHGDDPCLLPDGTDAYALAKKAGRYKQIKRTEGVSS 181

Query: 180 TDIVGRMLLCVRERSISDSHNHSSLQRQFSHGHNQKVEERGSGGTRVSHFLPTSRRIVQF 239
           TDIVGRMLLCVRERSISDSHNHSSLQRQFSHGH+Q  +     GTRVSHFLPTSRRIVQF
Sbjct: 182 TDIVGRMLLCVRERSISDSHNHSSLQRQFSHGHSQFEDGGSGSGTRVSHFLPTSRRIVQF 241

Query: 240 SNGKGPGPDARIIYIDGAFDLFHAGHVEILRIARGLGDFLLVGIHNDQTVR 290
           SNGKGPGPDARI+YIDGAFDLFHAGHVEILR+AR LGDFLLVGIH DQTV 
Sbjct: 242 SNGKGPGPDARIVYIDGAFDLFHAGHVEILRLARALGDFLLVGIHTDQTVS 292

Length = 418

>gnl|CDD|140329 PTZ00308, PTZ00308, ethanolamine-phosphate cytidylyltransferase; Provisional

 Score =  309 bits (794), Expect = e-105
 Identities = 120/245 (48%), Positives = 161/245 (65%), Gaps = 19/245 (7%)

Query: 48  KKKP--VRVYMDGCFDMMHYGHCNALRQARALGDQLVVGVVSDAEIIANKGPPVTPLHER 105
            KKP  +RV++DGCFDM+H+GH NALRQARALGD+L VG  SD EI+ NKGPPV    ER
Sbjct: 6   PKKPGTIRVWVDGCFDMLHFGHANALRQARALGDELFVGCHSDEEIMRNKGPPVMHQEER 65

Query: 106 MIMVNAVKWVDEVISDAPYAITKDFMKKLFDEYNIDYIIHGDDPCVLPDGTDAYELAKKA 165
              + A KWVDEV+   PY    + +++L      D+++HGDD  V  +G ++Y+    A
Sbjct: 66  YEALRACKWVDEVVEGYPYTTRLEDLERL----ECDFVVHGDDISVDLNGRNSYQEIIDA 121

Query: 166 GRYKQIKRTEGVSSTDIVGRMLLCVRERSISDSHNHSSLQRQFSHGHNQKVEERGSGGTR 225
           G++K +KRTEG+S+TD+VGRMLLC +      SH   S+          ++E      T 
Sbjct: 122 GKFKVVKRTEGISTTDLVGRMLLCTK------SHLLKSVD-------EVQLESSLFPYTP 168

Query: 226 VSHFLPTSRRIVQFSNGKGPGPDARIIYIDGAFDLFHAGHVEILRIARGLGDFLLVGIHN 285
            SH L TSR+IVQFSN + P P  RI+Y+DG+FDLFH GH+ +L+ AR LGD+L+VG+H 
Sbjct: 169 TSHCLTTSRKIVQFSNNRSPKPGDRIVYVDGSFDLFHIGHIRVLQKARELGDYLIVGVHE 228

Query: 286 DQTVR 290
           DQ V 
Sbjct: 229 DQVVN 233

Length = 353

>gnl|CDD|173925 cd02174, CCT, CTP:phosphocholine cytidylyltransferase

 Score =  245 bits (629), Expect = 1e-82
 Identities = 81/153 (52%), Positives = 102/153 (66%), Gaps = 6/153 (3%)

Query: 50  KPVRVYMDGCFDMMHYGHCNALRQARALG--DQLVVGVVSDAEIIANKGPPVTPLHERMI 107
           +PVRVY+DGCFD+ HYGH NALRQA+ LG  D L+VGV SD EI  +KGPPV    ER  
Sbjct: 1   RPVRVYVDGCFDLFHYGHANALRQAKKLGPNDYLIVGVHSDEEIHKHKGPPVMTEEERYE 60

Query: 108 MVNAVKWVDEVISDAPYAITKDFMKKLFDEYNIDYIIHGDDPCVLPDGTDAYELAKKAGR 167
            V   KWVDEV+  APY  T +F+ K    Y  DY+ HGDD  +  DG D Y+  K AGR
Sbjct: 61  AVRHCKWVDEVVEGAPYVTTPEFLDK----YKCDYVAHGDDIYLDADGEDCYQEVKDAGR 116

Query: 168 YKQIKRTEGVSSTDIVGRMLLCVRERSISDSHN 200
           +K++KRTEGVS+TD++GR+LL  R+    +   
Sbjct: 117 FKEVKRTEGVSTTDLIGRILLDYRDYHRRNLQR 149

CTP:phosphocholine cytidylyltransferase (CCT) catalyzes the condensation of CTP and phosphocholine to form CDP-choline as the rate-limiting and regulatory step in the CDP-choline pathway. CCT is unique in that its enzymatic activity is regulated by the extent of its association with membrane structures. A current model posts that the elastic stress of the bilayer curvature is sensed by CCT and this governs the degree of membrane association, thus providing a mechanism for both positive and negative regulation of activity. Length = 150

>gnl|CDD|223688 COG0615, TagD, Cytidylyltransferase [Cell envelope biogenesis, outer membrane / Lipid metabolism]

 Score =  133 bits (336), Expect = 8e-39
 Identities = 55/144 (38%), Positives = 84/144 (58%), Gaps = 13/144 (9%)

Query: 51  PVRVYMDGCFDMMHYGHCNALRQARALGDQLVVGVVSDAEII-ANKGPPVTPLHERMIMV 109
             RV+ DG FD++H GH   LRQA+ LGD+L+V V  D  +I   K  P+ P  +R  ++
Sbjct: 1   MKRVWADGTFDILHPGHIEFLRQAKKLGDELIVVVARDETVIKRKKRKPIMPEEQRAEVL 60

Query: 110 NAVKWVDEVISDAPYAITKDFMKKLFDEYNIDYIIHGDDPCVLPDGTDAYELAKKAGRYK 169
            ++++VDEVI  AP+ I  + ++    EY  D ++ GDD     +    YEL  K G + 
Sbjct: 61  ESLRYVDEVILGAPWDIKFEDIE----EYKPDIVVLGDDQ-KFDEDDLKYEL-VKRGLFV 114

Query: 170 QIKRTEGV------SSTDIVGRML 187
           ++KRTEGV      S++DI+ R+L
Sbjct: 115 EVKRTEGVSTCELISTSDIIKRIL 138

Length = 140

>gnl|CDD|173924 cd02173, ECT, CTP:phosphoethanolamine cytidylyltransferase (ECT)

 Score =  129 bits (327), Expect = 2e-37
 Identities = 55/138 (39%), Positives = 80/138 (57%), Gaps = 8/138 (5%)

Query: 54  VYMDGCFDMMHYGHCNALRQARALGDQLVVGVVSDAEIIANKGP--PVTPLHERMIMVNA 111
           VY+DG FD+ H GH   L +AR LGD L+VGV  D  +   KG   P+  LHER++ V A
Sbjct: 5   VYVDGAFDLFHIGHIEFLEKARELGDYLIVGVHDDQTVNEYKGSNYPIMNLHERVLSVLA 64

Query: 112 VKWVDEVISDAPYAITKDFMKKLFDEYNIDYIIHGDDP--CVLPDGTDAYELAKKAGRYK 169
            ++VDEV+  APY ITK+ ++       ID ++HG         DG D Y + K+ G +K
Sbjct: 65  CRYVDEVVIGAPYVITKELIEHF----KIDVVVHGKTEETPDSLDGEDPYAVPKEMGIFK 120

Query: 170 QIKRTEGVSSTDIVGRML 187
           +I     +++ DIV R++
Sbjct: 121 EIDSGSDLTTRDIVNRII 138

CTP:phosphoethanolamine cytidylyltransferase (ECT) catalyzes the conversion of phosphoethanolamine to CDP-ethanolamine as part of the CDP-ethanolamine biosynthesis pathway. ECT expression in hepatocytes is localized predominantly to areas of the cytoplasm that are rich in rough endoplasmic reticulum. Several ECTs, including yeast and human ECT, have large repetitive sequences located within their N- and C-termini. Length = 152

>gnl|CDD|173921 cd02170, cytidylyltransferase, cytidylyltransferase

 Score =  122 bits (309), Expect = 8e-35
 Identities = 55/139 (39%), Positives = 79/139 (56%), Gaps = 7/139 (5%)

Query: 51  PVRVYMDGCFDMMHYGHCNALRQARALGDQLVVGVVSDAEIIANKGPPVTPLHERMIMVN 110
             RVY  G FD++H GH   L +A+ LGD L+VGV  D  +   K  P+ P  +R  +V 
Sbjct: 1   MKRVYAAGTFDIIHPGHIRFLEEAKKLGDYLIVGVARDETVAKIKRRPILPEEQRAEVVE 60

Query: 111 AVKWVDEVISDAPYAITKDFMKKLFDEYNIDYIIHGDDPCVLPDGTDAYELAKKAGRYKQ 170
           A+K+VDEVI   P+     + K L +    D I+ GDD     D  + YE  KK G+  +
Sbjct: 61  ALKYVDEVILGHPW----SYFKPLEELKP-DVIVLGDDQKNGVDEEEVYEELKKRGKVIE 115

Query: 171 I--KRTEGVSSTDIVGRML 187
           +  K+TEG+SS+DI+ R+L
Sbjct: 116 VPRKKTEGISSSDIIKRIL 134

The cytidylyltransferase family includes cholinephosphate cytidylyltransferase (CCT), glycerol-3-phosphate cytidylyltransferase, RafE and phosphoethanolamine cytidylyltransferase (ECT). All enzymes catalyze the transfer of a cytidylyl group from CTP to various substrates. Length = 136

>gnl|CDD|215229 PLN02413, PLN02413, choline-phosphate cytidylyltransferase

 Score =  124 bits (312), Expect = 2e-33
 Identities = 59/142 (41%), Positives = 85/142 (59%), Gaps = 8/142 (5%)

Query: 50  KPVRVYMDGCFDMMHYGHCNALRQARAL--GDQLVVGVVSDAEIIANKGPPVTPLHERMI 107
           +PVRVY DG +D+ H+GH  +L QA+ L     L+VG  +D      KG  V    ER  
Sbjct: 26  RPVRVYADGIYDLFHFGHARSLEQAKKLFPNTYLLVGCCNDELTHKYKGKTVMTEDERYE 85

Query: 108 MVNAVKWVDEVISDAPYAITKDFMKKLFDEYNIDYIIHGDDPCVLPDGT--DAYELAKKA 165
            +   KWVDEVI DAP+ IT++F+    D++ IDY+ H   P     G   D YE  KK 
Sbjct: 86  SLRHCKWVDEVIPDAPWVITQEFL----DKHRIDYVAHDALPYADASGAGKDVYEFVKKI 141

Query: 166 GRYKQIKRTEGVSSTDIVGRML 187
           G++K+ KRT+G+S++DI+ R++
Sbjct: 142 GKFKETKRTDGISTSDIIMRIV 163

Length = 294

>gnl|CDD|140329 PTZ00308, PTZ00308, ethanolamine-phosphate cytidylyltransferase; Provisional

 Score =  121 bits (304), Expect = 7e-32
 Identities = 49/138 (35%), Positives = 81/138 (58%), Gaps = 8/138 (5%)

Query: 54  VYMDGCFDMMHYGHCNALRQARALGDQLVVGVVSDAEIIANKGP--PVTPLHERMIMVNA 111
           VY+DG FD+ H GH   L++AR LGD L+VGV  D  +   KG   P+  L+ER++ V +
Sbjct: 195 VYVDGSFDLFHIGHIRVLQKARELGDYLIVGVHEDQVVNEQKGSNYPIMNLNERVLGVLS 254

Query: 112 VKWVDEVISDAPYAITKDFMKKLFDEYNIDYIIHGD--DPCVLPDGTDAYELAKKAGRYK 169
            ++VDEV+  AP+ +TK+    + D  +I+ ++ G   D      G+D YE+ K  G +K
Sbjct: 255 CRYVDEVVIGAPFDVTKE----VIDSLHINVVVGGKFSDLVNEEGGSDPYEVPKAMGIFK 310

Query: 170 QIKRTEGVSSTDIVGRML 187
           ++     +++  IV R++
Sbjct: 311 EVDSGCDLTTDSIVDRVV 328

Length = 353

>gnl|CDD|215227 PLN02406, PLN02406, ethanolamine-phosphate cytidylyltransferase

 Score = 97.1 bits (241), Expect = 9e-23
 Identities = 50/139 (35%), Positives = 83/139 (59%), Gaps = 9/139 (6%)

Query: 54  VYMDGCFDMMHYGHCNALRQARALGDQLVVGVVSDAEIIANKGP--PVTPLHERMIMVNA 111
           VY+DG FD+ H GH   LR ARALGD L+VG+ +D  + A++G   P+  LHER + V A
Sbjct: 254 VYIDGAFDLFHAGHVEILRLARALGDFLLVGIHTDQTVSAHRGAHRPIMNLHERSLSVLA 313

Query: 112 VKWVDEVISDAPYAITKDFMKKLFDEYNIDYIIHG---DDPCVLPDGTDAYELAKKAGRY 168
            ++VDEVI  AP+ ++KD    +   +NI  ++HG   ++   L    D Y + K  G +
Sbjct: 314 CRYVDEVIIGAPWEVSKD----MITTFNISLVVHGTVAENNDFLKGEDDPYAVPKSMGIF 369

Query: 169 KQIKRTEGVSSTDIVGRML 187
           + ++    ++++ I+ R++
Sbjct: 370 QVLESPLDITTSTIIRRIV 388

Length = 418

>gnl|CDD|173924 cd02173, ECT, CTP:phosphoethanolamine cytidylyltransferase (ECT)

 Score = 85.0 bits (211), Expect = 3e-20
 Identities = 26/46 (56%), Positives = 35/46 (76%)

Query: 248 DARIIYIDGAFDLFHAGHVEILRIARGLGDFLLVGIHNDQTVRLKN 293
             +++Y+DGAFDLFH GH+E L  AR LGD+L+VG+H+DQTV    
Sbjct: 1   GDKVVYVDGAFDLFHIGHIEFLEKARELGDYLIVGVHDDQTVNEYK 46

CTP:phosphoethanolamine cytidylyltransferase (ECT) catalyzes the conversion of phosphoethanolamine to CDP-ethanolamine as part of the CDP-ethanolamine biosynthesis pathway. ECT expression in hepatocytes is localized predominantly to areas of the cytoplasm that are rich in rough endoplasmic reticulum. Several ECTs, including yeast and human ECT, have large repetitive sequences located within their N- and C-termini. Length = 152

>gnl|CDD|131254 TIGR02199, rfaE_dom_II, rfaE bifunctional protein, domain II

 Score = 81.2 bits (201), Expect = 6e-19
 Identities = 51/152 (33%), Positives = 78/152 (51%), Gaps = 25/152 (16%)

Query: 46  RKKKKPVRVYMDGCFDMMHYGHCNALRQARALGDQLVVGVVSDAEIIANKGP--PVTPLH 103
           R + K + V+ +GCFD++H GH + L+QARALGD+LVVGV SDA +   KG   P+ P  
Sbjct: 7   RARGKKI-VFTNGCFDILHAGHVSYLQQARALGDRLVVGVNSDASVKRLKGETRPINPEE 65

Query: 104 ERMIMVNAVKWVDEVISDAPYAITKDFMKKLFDEYNIDYIIHGDDPCVLPDGTD------ 157
           +R  ++ A+  VD V+              +FDE   + +I    P +L  G D      
Sbjct: 66  DRAEVLAALSSVDYVV--------------IFDEDTPEELIGELKPDILVKGGDYKVETL 111

Query: 158 --AYELAKKAGRYKQIKRTEGVSSTDIVGRML 187
             A  +    G+   +   EG S+T I+ ++L
Sbjct: 112 VGAELVESYGGQVVLLPFVEGRSTTAIIEKIL 143

RfaE is a protein involved in the biosynthesis of ADP-L-glycero-D-manno-heptose, a precursor for LPS inner core biosynthesis. RfaE is a bifunctional protein in E. coli, and separate proteins in some other genome. Domain I (TIGR02198) is suggested to act in D-glycero-D-manno-heptose 1-phosphate biosynthesis, while domain II (this family) adds ADP to yield ADP-D-glycero-D-manno-heptose [Cell envelope, Biosynthesis and degradation of surface polysaccharides and lipopolysaccharides]. Length = 144

>gnl|CDD|232837 TIGR00125, cyt_tran_rel, cytidyltransferase-like domain

 Score = 75.4 bits (186), Expect = 1e-17
 Identities = 30/66 (45%), Positives = 40/66 (60%)

Query: 53  RVYMDGCFDMMHYGHCNALRQARALGDQLVVGVVSDAEIIANKGPPVTPLHERMIMVNAV 112
            V   G FD  H GH + L +A+ L D+L+VGV SD  +   KG PV  L ER+ M+ A+
Sbjct: 1   IVIFVGTFDPFHLGHLDLLERAKELFDELIVGVGSDQFVNPLKGEPVFSLEERLEMLKAL 60

Query: 113 KWVDEV 118
           K+VDE 
Sbjct: 61  KYVDEN 66

Protein families that contain at least one copy of this domain include citrate lyase ligase, pantoate-beta-alanine ligase, glycerol-3-phosphate cytidyltransferase, ADP-heptose synthase, phosphocholine cytidylyltransferase, lipopolysaccharide core biosynthesis protein KdtB, the bifunctional protein NadR, and a number whose function is unknown. Many of these proteins are known to use CTP or ATP and release pyrophosphate. Length = 66

>gnl|CDD|225425 COG2870, RfaE, ADP-heptose synthase, bifunctional sugar kinase/adenylyltransferase [Cell envelope biogenesis, outer membrane]

 Score = 78.5 bits (194), Expect = 3e-16
 Identities = 50/150 (33%), Positives = 73/150 (48%), Gaps = 22/150 (14%)

Query: 46  RKKKKPVRVYMDGCFDMMHYGHCNALRQARALGDQLVVGVVSDAEIIANKGP--PVTPLH 103
           R       V+ +GCFD++H GH   L QARALGD+L+VGV SDA +   KG   P+    
Sbjct: 327 RLAAGKKVVFTNGCFDILHAGHVTYLAQARALGDRLIVGVNSDASVKRLKGESRPINSEE 386

Query: 104 ERMIMVNAVKWVDEVIS---DAPY----AITKDFMKKLFDEYNIDYIIHGDDPCVLPDGT 156
           +R  ++ A++ VD V+    D P     A+  D + K  D Y I+ I+          G 
Sbjct: 387 DRAAVLAALESVDLVVIFDEDTPEELIEAVKPDILVKGGD-YKIEKIV----------GA 435

Query: 157 DAYELAKKAGRYKQIKRTEGVSSTDIVGRM 186
           D   +    G    I   EG S+T I+ ++
Sbjct: 436 D--IVEAYGGEVLLIPFEEGKSTTKIIEKI 463

Length = 467

>gnl|CDD|183085 PRK11316, PRK11316, bifunctional heptose 7-phosphate kinase/heptose 1-phosphate adenyltransferase; Provisional

 Score = 76.0 bits (188), Expect = 2e-15
 Identities = 48/144 (33%), Positives = 73/144 (50%), Gaps = 23/144 (15%)

Query: 53  RVYM-DGCFDMMHYGHCNALRQARALGDQLVVGVVSDAEIIANKGP--PVTPLHERMIMV 109
           ++ M +GCFD++H GH + L  AR LGD+L+V V SDA +   KG   PV PL +RM ++
Sbjct: 341 KIVMTNGCFDILHAGHVSYLANARKLGDRLIVAVNSDASVKRLKGEGRPVNPLEQRMAVL 400

Query: 110 NAVKWVDEVIS---DAPY----AITKDFMKKLFDEYNIDYIIHGDDPCVLPDGTDAYELA 162
            A++ VD V+    D P      I  D + K  D Y  + I       V  +G       
Sbjct: 401 AALEAVDWVVPFEEDTPQRLIAEILPDLLVKGGD-YKPEEIAGSK--EVWANG------- 450

Query: 163 KKAGRYKQIKRTEGVSSTDIVGRM 186
              G  K +   +G S+T+I+ ++
Sbjct: 451 ---GEVKVLNFEDGCSTTNIIKKI 471

Length = 473

>gnl|CDD|173922 cd02171, G3P_Cytidylyltransferase, glycerol-3-phosphate cytidylyltransferase

 Score = 70.2 bits (172), Expect = 4e-15
 Identities = 46/134 (34%), Positives = 73/134 (54%), Gaps = 14/134 (10%)

Query: 50  KPVRVYMDGCFDMMHYGHCNALRQARALGDQLVVGVVSDAEIIANKGP-PVTPLHERMIM 108
           K V  Y  G FD++H GH N L +A+ALGD+L+V V +D E  A KG   V P  +R  +
Sbjct: 2   KVVITY--GTFDLLHIGHLNLLERAKALGDKLIVAVSTD-EFNAGKGKKAVIPYEQRAEI 58

Query: 109 VNAVKWVDEVISDAPYAITKDFMKKLFDEYNIDYIIHGDDPCVLPDGTDAYELAKKAGRY 168
           + ++++VD VI +  +    + +KK    YN+D  + GD      D    ++  K+    
Sbjct: 59  LESIRYVDLVIPETNWEQKIEDIKK----YNVDVFVMGD------DWEGKFDFLKEYCEV 108

Query: 169 KQIKRTEGVSSTDI 182
             + RT+G+SST +
Sbjct: 109 VYLPRTKGISSTQL 122

Glycerol-3-phosphate cytidylyltransferase,(CDP-glycerol pyrophosphorylase). Glycerol-3-phosphate cytidyltransferase acts in pathways of teichoic acid biosynthesis. Teichoic acids are substituted polymers, linked by phosphodiester bonds, of glycerol, ribitol, etc. An example is poly(glycerol phosphate), the major teichoic acid of the Bacillus subtilis cell wall. Most, but not all, species encoding proteins in this family are Gram-positive bacteria. A closely related protein assigned a different function experimentally is a human ethanolamine-phosphate cytidylyltransferase. Length = 129

>gnl|CDD|216517 pfam01467, CTP_transf_2, Cytidylyltransferase

 Score = 67.5 bits (165), Expect = 7e-14
 Identities = 31/148 (20%), Positives = 49/148 (33%), Gaps = 21/148 (14%)

Query: 57  DGCFDMMHYGHCNALRQARALGDQL-VVGVVSDAEIIANKGPPVTPLHERMIMVNAVKWV 115
            G FD +H GH   L QA+ L D   +VGV SD          +    ER+ M+     V
Sbjct: 3   GGTFDPIHLGHLRLLEQAKELFDLDKIVGVPSDES-PHKDTKNLFSAEERLEMLELALEV 61

Query: 116 DEVISDAPYAITKDF----------------MKKLFDEYNIDYIIHGDDPCVLPDGTDAY 159
           D  +    +     +                + +L  E+ I  +    D  +        
Sbjct: 62  DPNLEVDDFEDLDVYFIIGADALVNLRGWRGVTELLPEFQIVVVNRPLDYGLETVFLREE 121

Query: 160 ELAKKAG--RYKQIKRTEGVSSTDIVGR 185
                 G      +   + +SST+I  R
Sbjct: 122 LDKYPLGKIVIPDLPYND-ISSTEIRER 148

This family includes: Cholinephosphate cytidylyltransferase. Glycerol-3-phosphate cytidylyltransferase. Length = 148

>gnl|CDD|173923 cd02172, RfaE_N, N-terminal domain of RfaE

 Score = 65.9 bits (161), Expect = 2e-13
 Identities = 35/103 (33%), Positives = 52/103 (50%), Gaps = 3/103 (2%)

Query: 48  KKKPVRVYMDGCFDMMHYGHCNALRQARALGDQLVVGVVSDAEIIANKGPPVTPLHERMI 107
           + K V V   G FD++H GH   L+ AR+LGD LVV + SD  +    G P+ P   R  
Sbjct: 2   RGKTV-VLCHGVFDLLHPGHVRHLQAARSLGDILVVSLTSDRYVNKGPGRPIFPEDLRAE 60

Query: 108 MVNAVKWVDEV-ISDAPYAITK-DFMKKLFDEYNIDYIIHGDD 148
           ++ A+ +VD V + D P A+   D ++        DY    +D
Sbjct: 61  VLAALGFVDYVVLFDNPTALEIIDALQPNIYVKGGDYENPEND 103

RfaE is a protein involved in the biosynthesis of ADP-L-glycero-D-manno-heptose, a precursor for LPS inner core biosynthesis. RfaE is a bifunctional protein in Escherichia coli, and separate proteins in other organisms. Domain I is suggested to act in D-glycero-D-manno-heptose 1-phosphate biosynthesis, while domain II (this family) adds ADP to yield ADP-D-glycero-D-manno-heptose . Length = 144

>gnl|CDD|130581 TIGR01518, g3p_cytidyltrns, glycerol-3-phosphate cytidylyltransferase

 Score = 65.3 bits (159), Expect = 3e-13
 Identities = 37/127 (29%), Positives = 64/127 (50%), Gaps = 12/127 (9%)

Query: 58  GCFDMMHYGHCNALRQARALGDQLVVGVVSDAEIIANKGPPVTPLHERMIMVNAVKWVDE 117
           G FD++H+GH N L +A+ LGD L+V + +D   +  +         R +++  +++VD 
Sbjct: 5   GTFDLLHWGHINLLERAKQLGDYLIVALSTDEFNLQKQKKAYHSYEHRKLILETIRYVDL 64

Query: 118 VISDAPYAITKDFMKKLFDEYNIDYIIHGDDPCVLPDGTDAYELAKKAGRYK--QIKRTE 175
           VI +  +    +  K+   ++NID  + GD      D    ++  K     K   + RTE
Sbjct: 65  VIPEKSW----EQKKQDIIDFNIDVFVMGD------DWEGKFDFLKDECPLKVVYLPRTE 114

Query: 176 GVSSTDI 182
           GVS+T I
Sbjct: 115 GVSTTKI 121

This model describes glycerol-3-phosphate cytidyltransferase, also called CDP-glycerol pyrophosphorylase. A closely related protein assigned a different function experimentally is a human ethanolamine-phosphate cytidylyltransferase (EC 2.7.7.14). Glycerol-3-phosphate cytidyltransferase acts in pathways of teichoic acid biosynthesis. Teichoic acids are substituted polymers, linked by phosphodiester bonds, of glycerol, ribitol, etc. An example is poly(glycerol phosphate), the major teichoic acid of the Bacillus subtilis cell wall. Most but not all species encoding proteins in this family are Gram-positive bacteria [Cell envelope, Biosynthesis and degradation of murein sacculus and peptidoglycan]. Length = 125

>gnl|CDD|173925 cd02174, CCT, CTP:phosphocholine cytidylyltransferase

 Score = 56.0 bits (136), Expect = 7e-10
 Identities = 24/48 (50%), Positives = 33/48 (68%), Gaps = 3/48 (6%)

Query: 252 IYIDGAFDLFHAGHVEILRIARGLG--DFLLVGIHNDQ-TVRLKNPSV 296
           +Y+DG FDLFH GH   LR A+ LG  D+L+VG+H+D+   + K P V
Sbjct: 5   VYVDGCFDLFHYGHANALRQAKKLGPNDYLIVGVHSDEEIHKHKGPPV 52

CTP:phosphocholine cytidylyltransferase (CCT) catalyzes the condensation of CTP and phosphocholine to form CDP-choline as the rate-limiting and regulatory step in the CDP-choline pathway. CCT is unique in that its enzymatic activity is regulated by the extent of its association with membrane structures. A current model posts that the elastic stress of the bilayer curvature is sensed by CCT and this governs the degree of membrane association, thus providing a mechanism for both positive and negative regulation of activity. Length = 150

>gnl|CDD|131254 TIGR02199, rfaE_dom_II, rfaE bifunctional protein, domain II

 Score = 53.8 bits (130), Expect = 5e-09
 Identities = 23/47 (48%), Positives = 35/47 (74%), Gaps = 1/47 (2%)

Query: 250 RIIYIDGAFDLFHAGHVEILRIARGLGDFLLVGIHNDQTV-RLKNPS 295
           +I++ +G FD+ HAGHV  L+ AR LGD L+VG+++D +V RLK  +
Sbjct: 12  KIVFTNGCFDILHAGHVSYLQQARALGDRLVVGVNSDASVKRLKGET 58

RfaE is a protein involved in the biosynthesis of ADP-L-glycero-D-manno-heptose, a precursor for LPS inner core biosynthesis. RfaE is a bifunctional protein in E. coli, and separate proteins in some other genome. Domain I (TIGR02198) is suggested to act in D-glycero-D-manno-heptose 1-phosphate biosynthesis, while domain II (this family) adds ADP to yield ADP-D-glycero-D-manno-heptose [Cell envelope, Biosynthesis and degradation of surface polysaccharides and lipopolysaccharides]. Length = 144

>gnl|CDD|232837 TIGR00125, cyt_tran_rel, cytidyltransferase-like domain

 Score = 51.1 bits (123), Expect = 6e-09
 Identities = 21/47 (44%), Positives = 29/47 (61%), Gaps = 1/47 (2%)

Query: 251 IIYIDGAFDLFHAGHVEILRIARGLGDFLLVGIHNDQTVR-LKNPSV 296
           I+   G FD FH GH+++L  A+ L D L+VG+ +DQ V  LK   V
Sbjct: 1   IVIFVGTFDPFHLGHLDLLERAKELFDELIVGVGSDQFVNPLKGEPV 47

Protein families that contain at least one copy of this domain include citrate lyase ligase, pantoate-beta-alanine ligase, glycerol-3-phosphate cytidyltransferase, ADP-heptose synthase, phosphocholine cytidylyltransferase, lipopolysaccharide core biosynthesis protein KdtB, the bifunctional protein NadR, and a number whose function is unknown. Many of these proteins are known to use CTP or ATP and release pyrophosphate. Length = 66

>gnl|CDD|234834 PRK00777, PRK00777, phosphopantetheine adenylyltransferase; Provisional

 Score = 53.3 bits (129), Expect = 7e-09
 Identities = 29/93 (31%), Positives = 42/93 (45%), Gaps = 13/93 (13%)

Query: 58  GCFDMMHYGHCNALRQARALGDQLVVGVVSDAEIIANKGPPVTPLHERMIMVNAVKWVDE 117
           G FD +H GH   LR+A  LG ++ +G+ SD    + K   V P   R+   N  K++  
Sbjct: 8   GTFDPLHDGHRALLRKAFELGKRVTIGLTSDEFAKSYKKHKVRPYEVRLK--NLKKFLKA 65

Query: 118 VISDAPYAITKDFMKKLFDEY------NIDYII 144
           V  D  Y I      K+ D Y      + D I+
Sbjct: 66  VEYDREYEI-----VKIDDPYGPALEDDFDAIV 93

Length = 153

>gnl|CDD|173921 cd02170, cytidylyltransferase, cytidylyltransferase

 Score = 52.3 bits (126), Expect = 2e-08
 Identities = 18/41 (43%), Positives = 26/41 (63%)

Query: 252 IYIDGAFDLFHAGHVEILRIARGLGDFLLVGIHNDQTVRLK 292
           +Y  G FD+ H GH+  L  A+ LGD+L+VG+  D+TV   
Sbjct: 4   VYAAGTFDIIHPGHIRFLEEAKKLGDYLIVGVARDETVAKI 44

The cytidylyltransferase family includes cholinephosphate cytidylyltransferase (CCT), glycerol-3-phosphate cytidylyltransferase, RafE and phosphoethanolamine cytidylyltransferase (ECT). All enzymes catalyze the transfer of a cytidylyl group from CTP to various substrates. Length = 136

>gnl|CDD|223688 COG0615, TagD, Cytidylyltransferase [Cell envelope biogenesis, outer membrane / Lipid metabolism]

 Score = 50.4 bits (121), Expect = 6e-08
 Identities = 19/42 (45%), Positives = 28/42 (66%)

Query: 252 IYIDGAFDLFHAGHVEILRIARGLGDFLLVGIHNDQTVRLKN 293
           ++ DG FD+ H GH+E LR A+ LGD L+V +  D+TV  + 
Sbjct: 4   VWADGTFDILHPGHIEFLRQAKKLGDELIVVVARDETVIKRK 45

Length = 140

>gnl|CDD|225425 COG2870, RfaE, ADP-heptose synthase, bifunctional sugar kinase/adenylyltransferase [Cell envelope biogenesis, outer membrane]

 Score = 52.3 bits (126), Expect = 1e-07
 Identities = 23/47 (48%), Positives = 34/47 (72%), Gaps = 1/47 (2%)

Query: 250 RIIYIDGAFDLFHAGHVEILRIARGLGDFLLVGIHNDQTV-RLKNPS 295
           ++++ +G FD+ HAGHV  L  AR LGD L+VG+++D +V RLK  S
Sbjct: 333 KVVFTNGCFDILHAGHVTYLAQARALGDRLIVGVNSDASVKRLKGES 379

Length = 467

>gnl|CDD|183085 PRK11316, PRK11316, bifunctional heptose 7-phosphate kinase/heptose 1-phosphate adenyltransferase; Provisional

 Score = 52.5 bits (127), Expect = 1e-07
 Identities = 22/47 (46%), Positives = 31/47 (65%), Gaps = 1/47 (2%)

Query: 250 RIIYIDGAFDLFHAGHVEILRIARGLGDFLLVGIHNDQTV-RLKNPS 295
           +I+  +G FD+ HAGHV  L  AR LGD L+V +++D +V RLK   
Sbjct: 341 KIVMTNGCFDILHAGHVSYLANARKLGDRLIVAVNSDASVKRLKGEG 387

Length = 473

>gnl|CDD|173922 cd02171, G3P_Cytidylyltransferase, glycerol-3-phosphate cytidylyltransferase

 Score = 47.5 bits (113), Expect = 5e-07
 Identities = 15/39 (38%), Positives = 24/39 (61%)

Query: 249 ARIIYIDGAFDLFHAGHVEILRIARGLGDFLLVGIHNDQ 287
            +++   G FDL H GH+ +L  A+ LGD L+V +  D+
Sbjct: 1   MKVVITYGTFDLLHIGHLNLLERAKALGDKLIVAVSTDE 39

Glycerol-3-phosphate cytidylyltransferase,(CDP-glycerol pyrophosphorylase). Glycerol-3-phosphate cytidyltransferase acts in pathways of teichoic acid biosynthesis. Teichoic acids are substituted polymers, linked by phosphodiester bonds, of glycerol, ribitol, etc. An example is poly(glycerol phosphate), the major teichoic acid of the Bacillus subtilis cell wall. Most, but not all, species encoding proteins in this family are Gram-positive bacteria. A closely related protein assigned a different function experimentally is a human ethanolamine-phosphate cytidylyltransferase. Length = 129

>gnl|CDD|173923 cd02172, RfaE_N, N-terminal domain of RfaE

 Score = 44.7 bits (106), Expect = 7e-06
 Identities = 18/41 (43%), Positives = 25/41 (60%)

Query: 250 RIIYIDGAFDLFHAGHVEILRIARGLGDFLLVGIHNDQTVR 290
            ++   G FDL H GHV  L+ AR LGD L+V + +D+ V 
Sbjct: 5   TVVLCHGVFDLLHPGHVRHLQAARSLGDILVVSLTSDRYVN 45

RfaE is a protein involved in the biosynthesis of ADP-L-glycero-D-manno-heptose, a precursor for LPS inner core biosynthesis. RfaE is a bifunctional protein in Escherichia coli, and separate proteins in other organisms. Domain I is suggested to act in D-glycero-D-manno-heptose 1-phosphate biosynthesis, while domain II (this family) adds ADP to yield ADP-D-glycero-D-manno-heptose . Length = 144

>gnl|CDD|130581 TIGR01518, g3p_cytidyltrns, glycerol-3-phosphate cytidylyltransferase

 Score = 42.9 bits (101), Expect = 2e-05
 Identities = 15/32 (46%), Positives = 22/32 (68%)

Query: 256 GAFDLFHAGHVEILRIARGLGDFLLVGIHNDQ 287
           G FDL H GH+ +L  A+ LGD+L+V +  D+
Sbjct: 5   GTFDLLHWGHINLLERAKQLGDYLIVALSTDE 36

This model describes glycerol-3-phosphate cytidyltransferase, also called CDP-glycerol pyrophosphorylase. A closely related protein assigned a different function experimentally is a human ethanolamine-phosphate cytidylyltransferase (EC 2.7.7.14). Glycerol-3-phosphate cytidyltransferase acts in pathways of teichoic acid biosynthesis. Teichoic acids are substituted polymers, linked by phosphodiester bonds, of glycerol, ribitol, etc. An example is poly(glycerol phosphate), the major teichoic acid of the Bacillus subtilis cell wall. Most but not all species encoding proteins in this family are Gram-positive bacteria [Cell envelope, Biosynthesis and degradation of murein sacculus and peptidoglycan]. Length = 125

>gnl|CDD|185678 cd02039, cytidylyltransferase_like, Cytidylyltransferase-like domain

 Score = 41.7 bits (98), Expect = 9e-05
 Identities = 21/102 (20%), Positives = 40/102 (39%), Gaps = 13/102 (12%)

Query: 58  GCFDMMHYGHCNALRQARALG-DQLVVGVVSDAEIIANKGPPVTPLHERMIMVNA----- 111
           G F+  H GH   +++A     D++++ +VS+         P   LHER+ M+       
Sbjct: 6   GRFEPFHLGHLKLIKEALEEALDEVIIIIVSNPPKKKRNKDP-FSLHERVEMLKEILKDR 64

Query: 112 ---VKWVDEVISDAPYAITKDFMKKLFDEYNIDYIIHGDDPC 150
              V      +          F+ K+  +   D ++ G+D  
Sbjct: 65  LKVVPVDFPEVKILL---AVVFILKILLKVGPDKVVVGEDFA 103

Cytidylyltransferase-like domain. Many of these proteins are known to use CTP or ATP and release pyrophosphate. Protein families that contain at least one copy of this domain include citrate lyase ligase, pantoate-beta-alanine ligase, glycerol-3-phosphate cytidyltransferase, ADP-heptose synthase, phosphocholine cytidylyltransferase, lipopolysaccharide core biosynthesis protein KdtB, the bifunctional protein NadR, and a number whose function is unknown. Length = 143

>gnl|CDD|233444 TIGR01510, coaD_prev_kdtB, pantetheine-phosphate adenylyltransferase, bacterial

 Score = 41.1 bits (97), Expect = 1e-04
 Identities = 31/106 (29%), Positives = 51/106 (48%), Gaps = 16/106 (15%)

Query: 58  GCFDMMHYGHCNALRQARALGDQLVVGVVSDAEIIANKGPPVTPLHERMIMV-NAVKWVD 116
           G FD +  GH + +++A AL D+++V V        +K P  + L ER+ ++ +A K + 
Sbjct: 6   GSFDPVTNGHLDIIKRAAALFDEVIVAVA----KNPSKKPLFS-LEERVELIKDATKHLP 60

Query: 117 EVISDAPYAITKDFMKKLFDEYNIDYIIHGDDPCVLPDGTD-AYEL 161
            V  D    +  D+ K+L       +I+ G     L   TD  YEL
Sbjct: 61  NVRVDVFDGLLVDYAKEL----GATFIVRG-----LRAATDFEYEL 97

This model describes pantetheine-phosphate adenylyltransferase, the penultimate enzyme of coenzyme A (CoA) biosynthesis in bacteria. It does not show any strong homology to eukaryotic enzymes of coenzyme A biosynthesis. This protein was previously designated KdtB and postulated (because of cytidyltransferase homology and proximity to kdtA) to be an enzyme of LPS biosynthesis, a cytidyltransferase for 3-deoxy-D-manno-2-octulosonic acid. However, no activity toward that compound was found with either CTP or ATP. The phylogenetic distribution of this enzyme is more consistent with coenzyme A biosynthesis than with LPS biosynthesis [Biosynthesis of cofactors, prosthetic groups, and carriers, Pantothenate and coenzyme A]. Length = 155

>gnl|CDD|216517 pfam01467, CTP_transf_2, Cytidylyltransferase

 Score = 39.7 bits (93), Expect = 4e-04
 Identities = 13/45 (28%), Positives = 23/45 (51%), Gaps = 1/45 (2%)

Query: 253 YIDGAFDLFHAGHVEILRIARGLGDFL-LVGIHNDQTVRLKNPSV 296
              G FD  H GH+ +L  A+ L D   +VG+ +D++      ++
Sbjct: 1   LFGGTFDPIHLGHLRLLEQAKELFDLDKIVGVPSDESPHKDTKNL 45

This family includes: Cholinephosphate cytidylyltransferase. Glycerol-3-phosphate cytidylyltransferase. Length = 148

>gnl|CDD|223741 COG0669, CoaD, Phosphopantetheine adenylyltransferase [Coenzyme metabolism]

 Score = 39.5 bits (93), Expect = 6e-04
 Identities = 30/106 (28%), Positives = 49/106 (46%), Gaps = 16/106 (15%)

Query: 58  GCFDMMHYGHCNALRQARALGDQLVVGVVSDAEIIANKGPPVTPLHERMIMV-NAVKWVD 116
           G FD +  GH + +++A AL D+++V V     I  +K  P+  L ER+ ++  A K + 
Sbjct: 9   GSFDPITNGHLDIIKRASALFDEVIVAVA----INPSKK-PLFSLEERVELIREATKHLP 63

Query: 117 EVISDAPYAITKDFMKKLFDEYNIDYIIHGDDPCVLPDGTD-AYEL 161
            V       +  D+ KKL        ++ G     L   +D  YEL
Sbjct: 64  NVEVVGFSGLLVDYAKKL----GATVLVRG-----LRAVSDFEYEL 100

Length = 159

>gnl|CDD|234912 PRK01170, PRK01170, phosphopantetheine adenylyltransferase/unknown domain fusion protein; Provisional

 Score = 39.8 bits (93), Expect = 0.001
 Identities = 25/97 (25%), Positives = 42/97 (43%), Gaps = 22/97 (22%)

Query: 53  RVYMDGCFDMMHYGHCNALRQARALGDQLVVGVVSDAEIIANKGPPVTPLHERMIMVNAV 112
              + G F  +H GH   L++A   GD++V+G+ SD  +  NK  P+ P  +R       
Sbjct: 2   ITVVGGTFSKLHKGHKALLKKAIETGDEVVIGLTSDEYVRKNKVYPI-PYEDR------- 53

Query: 113 KWVDEVISDAPYAITKDFMKKLFDEYNIDYIIHGDDP 149
                          ++F+KK  +++ I  I   DD 
Sbjct: 54  -----------KRKLENFIKKFTNKFRIRPI---DDR 76

Length = 322

>gnl|CDD|215229 PLN02413, PLN02413, choline-phosphate cytidylyltransferase

 Score = 39.2 bits (91), Expect = 0.002
 Identities = 21/53 (39%), Positives = 26/53 (49%), Gaps = 4/53 (7%)

Query: 240 SNGKGPGPDARII--YIDGAFDLFHAGHVEILRIARGL--GDFLLVGIHNDQT 288
           S      P  R +  Y DG +DLFH GH   L  A+ L    +LLVG  ND+ 
Sbjct: 16  SATPSSSPSDRPVRVYADGIYDLFHFGHARSLEQAKKLFPNTYLLVGCCNDEL 68

Length = 294

>gnl|CDD|223950 COG1019, COG1019, Predicted nucleotidyltransferase [General function prediction only]

 Score = 37.7 bits (88), Expect = 0.002
 Identities = 25/104 (24%), Positives = 44/104 (42%), Gaps = 20/104 (19%)

Query: 47  KKKKPVRVYMDGCFDMMHYGHCNALRQARALGDQLVVGVVSDAEIIANKGPPVTPLHERM 106
            K K ++V + G FD +H GH   L  A  +GD++ +G+ SD      K   + P   R+
Sbjct: 1   MKIKFMKVAVGGTFDRLHDGHKKLLEVAFEIGDRVTIGLTSDELAKKKKKEKIEPYEVRL 60

Query: 107 IMVNAVKWVDEVISDAPYAITKDFMKKLFDEYNIDYIIHGDDPC 150
             +                  ++F++ +  +Y    I+  DDP 
Sbjct: 61  RNL------------------RNFLESIKADYE--EIVPIDDPY 84

Length = 158

>gnl|CDD|234912 PRK01170, PRK01170, phosphopantetheine adenylyltransferase/unknown domain fusion protein; Provisional

 Score = 38.6 bits (90), Expect = 0.003
 Identities = 14/40 (35%), Positives = 23/40 (57%)

Query: 251 IIYIDGAFDLFHAGHVEILRIARGLGDFLLVGIHNDQTVR 290
           I  + G F   H GH  +L+ A   GD +++G+ +D+ VR
Sbjct: 2   ITVVGGTFSKLHKGHKALLKKAIETGDEVVIGLTSDEYVR 41

Length = 322

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	307
KOG2803	358	consensus Choline phosphate cytidylyltransferase/P	100.0
PLN02406	418	ethanolamine-phosphate cytidylyltransferase	100.0
PTZ00308	353	ethanolamine-phosphate cytidylyltransferase; Provi	100.0
cd02174	150	CCT CTP:phosphocholine cytidylyltransferase. CTP:p	100.0
PLN02413	294	choline-phosphate cytidylyltransferase	100.0
COG0615	140	TagD Cytidylyltransferase [Cell envelope biogenesi	99.97
PLN02406	418	ethanolamine-phosphate cytidylyltransferase	99.97
cd02173	152	ECT CTP:phosphoethanolamine cytidylyltransferase (	99.97
KOG2804	348	consensus Phosphorylcholine transferase/cholinepho	99.97
PTZ00308	353	ethanolamine-phosphate cytidylyltransferase; Provi	99.96
cd02170	136	cytidylyltransferase cytidylyltransferase. The cyt	99.96
cd02172	144	RfaE_N N-terminal domain of RfaE. RfaE is a protei	99.96
TIGR02199	144	rfaE_dom_II rfaE bifunctional protein, domain II.	99.95
TIGR01518	125	g3p_cytidyltrns glycerol-3-phosphate cytidylyltran	99.94
cd02171	129	G3P_Cytidylyltransferase glycerol-3-phosphate cyti	99.93
PRK07143	279	hypothetical protein; Provisional	99.9
cd02064	180	FAD_synthetase_N FAD synthetase, N-terminal domain	99.89
PRK11316	473	bifunctional heptose 7-phosphate kinase/heptose 1-	99.89
PRK05627	305	bifunctional riboflavin kinase/FMN adenylyltransfe	99.89
KOG2803	358	consensus Choline phosphate cytidylyltransferase/P	99.87
PF06574	157	FAD_syn: FAD synthetase; InterPro: IPR015864 Ribof	99.85
TIGR00083	288	ribF riboflavin kinase/FMN adenylyltransferase. mu	99.84
COG2870	467	RfaE ADP-heptose synthase, bifunctional sugar kina	99.81
COG0196	304	RibF FAD synthase [Coenzyme metabolism]	99.81
cd02039	143	cytidylyltransferase_like Cytidylyltransferase-lik	99.78
PRK00777	153	phosphopantetheine adenylyltransferase; Provisiona	99.72
smart00764	182	Citrate_ly_lig Citrate lyase ligase C-terminal dom	99.64
cd02169	297	Citrate_lyase_ligase Citrate lyase ligase. Citrate	99.63
TIGR01527	165	arch_NMN_Atrans nicotinamide-nucleotide adenylyltr	99.62
PRK00168	159	coaD phosphopantetheine adenylyltransferase; Provi	99.61
cd02163	153	PPAT Phosphopantetheine adenylyltransferase. Phosp	99.57
PLN02388	177	phosphopantetheine adenylyltransferase	99.57
PRK01170	322	phosphopantetheine adenylyltransferase/unknown dom	99.55
PF01467	157	CTP_transf_2: Cytidylyltransferase; InterPro: IPR0	99.53
cd02166	163	NMNAT_Archaea Nicotinamide/nicotinate mononucleoti	99.52
TIGR00125	66	cyt_tran_rel cytidyltransferase-related domain. Pr	99.49
cd02173	152	ECT CTP:phosphoethanolamine cytidylyltransferase (	99.49
TIGR01510	155	coaD_prev_kdtB pantetheine-phosphate adenylyltrans	99.46
PLN02413	294	choline-phosphate cytidylyltransferase	99.44
cd02174	150	CCT CTP:phosphocholine cytidylyltransferase. CTP:p	99.44
cd02164	143	PPAT_CoAS phosphopantetheine adenylyltransferase d	99.44
PRK00071	203	nadD nicotinic acid mononucleotide adenylyltransfe	99.4
cd02165	192	NMNAT Nicotinamide/nicotinate mononucleotide adeny	99.39
COG1057	197	NadD Nicotinic acid mononucleotide adenylyltransfe	99.35
cd02168	181	NMNAT_Nudix Nicotinamide/nicotinate mononucleotide	99.33
COG2870	467	RfaE ADP-heptose synthase, bifunctional sugar kina	99.31
PRK13964	140	coaD phosphopantetheine adenylyltransferase; Provi	99.31
TIGR00482	193	nicotinate (nicotinamide) nucleotide adenylyltrans	99.31
PRK01153	174	nicotinamide-nucleotide adenylyltransferase; Provi	99.3
COG0615	140	TagD Cytidylyltransferase [Cell envelope biogenesi	99.3
PRK08887	174	nicotinic acid mononucleotide adenylyltransferase;	99.26
cd02167	158	NMNAT_NadR Nicotinamide/nicotinate mononucleotide	99.26
PRK05379	340	bifunctional nicotinamide mononucleotide adenylylt	99.26
PRK06973	243	nicotinic acid mononucleotide adenylyltransferase;	99.25
PRK07152	342	nadD putative nicotinate-nucleotide adenylyltransf	99.19
COG0669	159	CoaD Phosphopantetheine adenylyltransferase [Coenz	99.19
COG1019	158	Predicted nucleotidyltransferase [General function	99.15
PRK13670	388	hypothetical protein; Provisional	99.12
PRK08099	399	bifunctional DNA-binding transcriptional repressor	99.09
cd09286	225	NMNAT_Eukarya Nicotinamide/nicotinate mononucleoti	98.99
PRK13793	196	nicotinamide-nucleotide adenylyltransferase; Provi	98.98
PRK00777	153	phosphopantetheine adenylyltransferase; Provisiona	98.96
cd00560	277	PanC Pantoate-beta-alanine ligase. PanC Pantoate-b	98.93
TIGR02199	144	rfaE_dom_II rfaE bifunctional protein, domain II.	98.92
TIGR00125	66	cyt_tran_rel cytidyltransferase-related domain. Pr	98.92
cd02170	136	cytidylyltransferase cytidylyltransferase. The cyt	98.91
PRK11316	473	bifunctional heptose 7-phosphate kinase/heptose 1-	98.9
PRK13671	298	hypothetical protein; Provisional	98.88
PLN02945	236	nicotinamide-nucleotide adenylyltransferase/nicoti	98.85
TIGR01518	125	g3p_cytidyltrns glycerol-3-phosphate cytidylyltran	98.85
cd02156	105	nt_trans nucleotidyl transferase superfamily. nt_t	98.82
cd02172	144	RfaE_N N-terminal domain of RfaE. RfaE is a protei	98.82
PRK00380	281	panC pantoate--beta-alanine ligase; Reviewed	98.8
TIGR00124	332	cit_ly_ligase [citrate (pro-3S)-lyase] ligase. ATP	98.79
cd02171	129	G3P_Cytidylyltransferase glycerol-3-phosphate cyti	98.74
TIGR01526	325	nadR_NMN_Atrans nicotinamide-nucleotide adenylyltr	98.73
KOG2804	348	consensus Phosphorylcholine transferase/cholinepho	98.72
COG1019	158	Predicted nucleotidyltransferase [General function	98.53
PRK00168	159	coaD phosphopantetheine adenylyltransferase; Provi	98.45
cd02164	143	PPAT_CoAS phosphopantetheine adenylyltransferase d	98.41
COG1056	172	NadR Nicotinamide mononucleotide adenylyltransfera	98.39
KOG3351	293	consensus Predicted nucleotidyltransferase [Genera	98.37
TIGR01527	165	arch_NMN_Atrans nicotinamide-nucleotide adenylyltr	98.36
PRK13964	140	coaD phosphopantetheine adenylyltransferase; Provi	98.29
cd02039	143	cytidylyltransferase_like Cytidylyltransferase-lik	98.24
PF01467	157	CTP_transf_2: Cytidylyltransferase; InterPro: IPR0	98.23
cd02156	105	nt_trans nucleotidyl transferase superfamily. nt_t	98.14
cd02166	163	NMNAT_Archaea Nicotinamide/nicotinate mononucleoti	98.14
PLN02388	177	phosphopantetheine adenylyltransferase	98.13
TIGR00018	282	panC pantoate--beta-alanine ligase. This family is	98.08
TIGR01510	155	coaD_prev_kdtB pantetheine-phosphate adenylyltrans	98.06
cd02163	153	PPAT Phosphopantetheine adenylyltransferase. Phosp	98.03
cd02167	158	NMNAT_NadR Nicotinamide/nicotinate mononucleotide	98.01
PLN02660	284	pantoate--beta-alanine ligase	97.99
PF08218	182	Citrate_ly_lig: Citrate lyase ligase C-terminal do	97.92
COG0669	159	CoaD Phosphopantetheine adenylyltransferase [Coenz	97.88
PRK05379	340	bifunctional nicotinamide mononucleotide adenylylt	97.87
PF05636	388	HIGH_NTase1: HIGH Nucleotidyl Transferase; InterPr	97.83
PRK13793	196	nicotinamide-nucleotide adenylyltransferase; Provi	97.67
PRK01153	174	nicotinamide-nucleotide adenylyltransferase; Provi	97.67
COG1323	358	Predicted nucleotidyltransferase [General function	97.63
TIGR00339	383	sopT ATP sulphurylase. Members of this family also	97.47
KOG3351	293	consensus Predicted nucleotidyltransferase [Genera	97.43
TIGR00124	332	cit_ly_ligase [citrate (pro-3S)-lyase] ligase. ATP	97.38
PRK08099	399	bifunctional DNA-binding transcriptional repressor	97.37
PRK00071	203	nadD nicotinic acid mononucleotide adenylyltransfe	97.34
COG1056	172	NadR Nicotinamide mononucleotide adenylyltransfera	97.12
PRK07143	279	hypothetical protein; Provisional	97.02
PRK05627	305	bifunctional riboflavin kinase/FMN adenylyltransfe	96.78
PRK08887	174	nicotinic acid mononucleotide adenylyltransferase;	96.69
COG3053	352	CitC Citrate lyase synthetase [Energy production a	96.42
cd02169	297	Citrate_lyase_ligase Citrate lyase ligase. Citrate	96.34
PF02569	280	Pantoate_ligase: Pantoate-beta-alanine ligase; Int	95.88
PRK06973	243	nicotinic acid mononucleotide adenylyltransferase;	95.81
PF01747	215	ATP-sulfurylase: ATP-sulfurylase; InterPro: IPR002	95.59
cd00517	353	ATPS ATP-sulfurylase. ATP-sulfurylase (ATPS), also	95.41
COG1057	197	NadD Nicotinic acid mononucleotide adenylyltransfe	95.41
PRK04149	391	sat sulfate adenylyltransferase; Reviewed	95.17
PLN02945	236	nicotinamide-nucleotide adenylyltransferase/nicoti	95.01
COG0414	285	PanC Panthothenate synthetase [Coenzyme metabolism	94.76
PRK13477	512	bifunctional pantoate ligase/cytidylate kinase; Pr	94.68
PF06574	157	FAD_syn: FAD synthetase; InterPro: IPR015864 Ribof	94.58
COG2046	397	MET3 ATP sulfurylase (sulfate adenylyltransferase)	93.97
COG0414	285	PanC Panthothenate synthetase [Coenzyme metabolism	92.34
PF02569	280	Pantoate_ligase: Pantoate-beta-alanine ligase; Int	91.71
PRK05537	568	bifunctional sulfate adenylyltransferase subunit 1	91.7
KOG3042	283	consensus Panthothenate synthetase [Coenzyme trans	91.43
PRK00380	281	panC pantoate--beta-alanine ligase; Reviewed	90.53
PLN02341	470	pfkB-type carbohydrate kinase family protein	89.58
PRK13477	512	bifunctional pantoate ligase/cytidylate kinase; Pr	88.9
TIGR00018	282	panC pantoate--beta-alanine ligase. This family is	87.83
cd00560	277	PanC Pantoate-beta-alanine ligase. PanC Pantoate-b	87.6
COG0159	265	TrpA Tryptophan synthase alpha chain [Amino acid t	86.61
PLN02660	284	pantoate--beta-alanine ligase	86.34
COG0196	304	RibF FAD synthase [Coenzyme metabolism]	83.8
KOG3042	283	consensus Panthothenate synthetase [Coenzyme trans	81.64

>KOG2803 consensus Choline phosphate cytidylyltransferase/Predicted CDP-ethanolamine synthase [Lipid transport and metabolism]

Probab=100.00  E-value=1.5e-70  Score=511.48  Aligned_cols=244  Identities=57%  Similarity=0.974  Sum_probs=219.5

Q ss_pred             cCCCCeEEEEecccCcCCHHHHHHHHHHHHcCCeEEEEEeCChhhhhcCCCCCCCHHHHHHHHHHccCccEEEEcCCCcc
Q 021802           47 KKKKPVRVYMDGCFDMMHYGHCNALRQARALGDQLVVGVVSDAEIIANKGPPVTPLHERMIMVNAVKWVDEVISDAPYAI  126 (307)
Q Consensus        47 ~~~~~~~V~~~G~FD~lH~GH~~lL~qAk~~gd~LiVgV~sD~~i~~~Kg~pi~s~eER~~ll~~~k~VD~Vv~~~py~~  126 (307)
                      .+.++.|||++||||++|+||+++|+|||++|++||||||+|++|..+||+|+|++|||++++++|||||||+.++||.+
T Consensus         4 ~~~~~~rVw~DGCfDm~HyGHanaLrQAkalGdkLivGVHsDeeI~~nKGpPV~t~eERy~~v~~ikWVDEVV~~APyvt   83 (358)
T KOG2803|consen    4 KKNRPVRVWADGCFDMVHYGHANALRQAKALGDKLIVGVHSDEEITLNKGPPVFTDEERYEMVKAIKWVDEVVEGAPYVT   83 (358)
T ss_pred             cCCCceeEEeccchhhhhhhhhHHHHHHHHhCCeEEEEecchHHHHhcCCCCcccHHHHHHHHhhcchhhhhhcCCCeec
Confidence            45667899999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cHHHHHHHHHhcCccEEEEcCCCCcCCCCCchHHHHHhCCEEEEcCCCCCCCHHHHHHHHHhhhhcCCccCcCCcchhhh
Q 021802          127 TKDFMKKLFDEYNIDYIIHGDDPCVLPDGTDAYELAKKAGRYKQIKRTEGVSSTDIVGRMLLCVRERSISDSHNHSSLQR  206 (307)
Q Consensus       127 t~dfle~ll~~l~~d~VV~GdD~~fg~~g~d~y~~lk~~g~v~vv~rt~~VSST~Ir~rIl~~~~~~~~~~~~~~~~~~~  206 (307)
                      +.+++    ++|+||+||||+|++..++|.|+|++.|++|++++++||+|||||+|++||++.++.++ .+++.......
T Consensus        84 t~~~m----d~y~cd~vvHGdDit~~a~G~D~Y~~vK~agrykevKRT~GVSTTelvgRmll~~~~~~-~~~~~~~~~e~  158 (358)
T KOG2803|consen   84 TLEWM----DKYGCDYVVHGDDITLDADGLDCYRLVKAAGRYKEVKRTEGVSTTELVGRMLLKKRNHH-SDEVSSSQREL  158 (358)
T ss_pred             cHHHH----HHhCCeEEEeCCcceecCCCccHHHHHHHhcchheeeeccCcchhhhhhHhhhhccCCC-ccccchhhhhh
Confidence            99998    57999999999999999999999999999999999999999999999999999999876 33222222223


Q ss_pred             hhccCCCccccccccc-cccccccccccceehcccCCCCCCCCCeEEEEeCcccccCHHHHHHHHHHHhCCCEEEEEEeC
Q 021802          207 QFSHGHNQKVEERGSG-GTRVSHFLPTSRRIVQFSNGKGPGPDARIIYIDGAFDLFHAGHVEILRIARGLGDFLLVGIHN  285 (307)
Q Consensus       207 ~~~~~~~~~~~~~~~~-~~~~~~~~~t~~~i~~f~~~~~~~~~~~~v~~~G~FDl~H~GHi~~L~~a~~~g~~liVgv~~  285 (307)
                      .++.+.+    +...+ |+++++|+||+++|+||++|++|+|++++||++|+|||||+||+.+|++||.+||||||||++
T Consensus       159 ~~~~g~~----~~~~sp~t~~s~F~~tt~~i~~~~~G~~p~p~~kvVYvdGaFDLFH~GHl~~Le~ak~lgdyLIvGI~~  234 (358)
T KOG2803|consen  159 SFSSGTD----DDGLSPWTRVSVFLPTTQKIIQFSNGREPKPTDKVVYVDGAFDLFHAGHLDFLEKAKRLGDYLIVGIHT  234 (358)
T ss_pred             hhccccC----CcccCCccceeeeeecCccceEeecCCCCCCCCcEEEEcCchhhhccchHHHHHHHHhccCceEEEeec
Confidence            3333332    22233 999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cccccccCCCc-ccc
Q 021802          286 DQTVRLKNPSV-SFI  299 (307)
Q Consensus       286 D~~v~~~~~~~-~~~  299 (307)
                      |++++++++.+ |..
T Consensus       235 D~~vneykgs~~PiM  249 (358)
T KOG2803|consen  235 DQTVNEYKGSNYPIM  249 (358)
T ss_pred             CcchhhhccCCCccc
Confidence            99999987764 544

>PLN02406 ethanolamine-phosphate cytidylyltransferase

Probab=100.00  E-value=3.5e-65  Score=498.81  Aligned_cols=283  Identities=83%  Similarity=1.290  Sum_probs=247.6

Q ss_pred             hhhhhHHHHHhhhHHHHHHHHHHHhhccCch---------hHHhHhhhcCCCCeEEEEecccCcCCHHHHHHHHHHHHcC
Q 021802            8 QSARILATCLIAGAVMVAGFSLLTLYLAAPN---------DRWLQWTRKKKKPVRVYMDGCFDMMHYGHCNALRQARALG   78 (307)
Q Consensus         8 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~V~~~G~FD~lH~GH~~lL~qAk~~g   78 (307)
                      ++++.+++|.+|++  ++++|+|++++.+..         ..+. ..+++.++.|||++||||++|.||+++|+||+++|
T Consensus         4 ~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~rV~~~G~FDllH~GH~~~L~qAk~lG   80 (418)
T PLN02406          4 SSAKYVASCLIGGL--MLGASVLGLSLAGFGSSLPYAWPDLGIF-KKKKKKKPVRVYMDGCFDMMHYGHANALRQARALG   80 (418)
T ss_pred             cccceeeehhhHHH--HHHHHHHHHHhccccccccccchhhhhh-ccccCCCceEEEEcCeeCCCCHHHHHHHHHHHHhC
Confidence            56778899999999  899999999875321         1112 23456678899999999999999999999999999


Q ss_pred             CeEEEEEeCChhhhhcCCCCCCCHHHHHHHHHHccCccEEEEcCCCcccHHHHHHHHHhcCccEEEEcCCCCcCCCCCch
Q 021802           79 DQLVVGVVSDAEIIANKGPPVTPLHERMIMVNAVKWVDEVISDAPYAITKDFMKKLFDEYNIDYIIHGDDPCVLPDGTDA  158 (307)
Q Consensus        79 d~LiVgV~sD~~i~~~Kg~pi~s~eER~~ll~~~k~VD~Vv~~~py~~t~dfle~ll~~l~~d~VV~GdD~~fg~~g~d~  158 (307)
                      |+|+|||++|+++..+|++|++|++||++++++|+|||+|++++||.++++|+++++++++||++|||+||+..++|.|+
T Consensus        81 d~LIVGV~SDe~i~~~Kg~PV~~~eER~~~v~alk~VD~Vv~~apy~~~~d~~~~li~~~~~D~vVhGdD~~~~~~g~d~  160 (418)
T PLN02406         81 DELVVGVVSDEEIIANKGPPVTPMHERMIMVSGVKWVDEVIPDAPYAITEEFMNKLFNEYNIDYIIHGDDPCLLPDGTDA  160 (418)
T ss_pred             CEEEEEEecChhhhccCCCCcCCHHHHHHHHHhcCCCceEEeCCccccchHHHHHHHHHhCCCEEEECCCccccCCchHH
Confidence            99999999999998899999999999999999999999999999999999999888889999999999999988899999


Q ss_pred             HHHHHhCCEEEEcCCCCCCCHHHHHHHHHhhhhcCCccCcCCcchhhhhhccCCCccccccccc-cccccccccccceeh
Q 021802          159 YELAKKAGRYKQIKRTEGVSSTDIVGRMLLCVRERSISDSHNHSSLQRQFSHGHNQKVEERGSG-GTRVSHFLPTSRRIV  237 (307)
Q Consensus       159 y~~lk~~g~v~vv~rt~~VSST~Ir~rIl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~t~~~i~  237 (307)
                      |...+.+|++++++|++++|||+|++||++++++|+....++...++++|+.+... .+..+.. ++.+++|++|+++|+
T Consensus       161 y~~~k~~Gr~~~i~rt~GvSTTdIv~Ril~~~k~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~t~~~i~  239 (418)
T PLN02406        161 YALAKKAGRYKQIKRTEGVSSTDIVGRMLLCVRERSISDSHNHSSLQRQFSHGHSQ-FEDGGSGSGTRVSHFLPTSRRIV  239 (418)
T ss_pred             HHHHHhCCEEEEEecCCCCCHHHHHHHHHHhhhccccccccchhhhhhhhcccccc-ccccCCCCCCCcccccccHHHHH
Confidence            99999999999999999999999999999999998754434444555566554332 1122222 567899999999999


Q ss_pred             cccCCCCCCCCCeEEEEeCcccccCHHHHHHHHHHHhCCCEEEEEEeCcccccccCC
Q 021802          238 QFSNGKGPGPDARIIYIDGAFDLFHAGHVEILRIARGLGDFLLVGIHNDQTVRLKNP  294 (307)
Q Consensus       238 ~f~~~~~~~~~~~~v~~~G~FDl~H~GHi~~L~~a~~~g~~liVgv~~D~~v~~~~~  294 (307)
                      ||++|++|+|++++||++|+|||||+||+++|++|+++||+|||||++|+.++++|+
T Consensus       240 qf~~g~~p~~~~~iVyv~G~FDlfH~GHi~~L~~Ak~lGd~LIVGV~sD~~v~~~KG  296 (418)
T PLN02406        240 QFSNGKGPGPDARIVYIDGAFDLFHAGHVEILRLARALGDFLLVGIHTDQTVSAHRG  296 (418)
T ss_pred             HHhccCCCCCCCeEEEECCeeccCCHHHHHHHHHHHHhCCEEEEEEeccHHHHHhcC
Confidence            999999999999999999999999999999999999999999999999999988765

>PTZ00308 ethanolamine-phosphate cytidylyltransferase; Provisional

Probab=100.00  E-value=1.3e-56  Score=433.09  Aligned_cols=231  Identities=50%  Similarity=0.880  Sum_probs=205.1

Q ss_pred             cCCCCeEEEEecccCcCCHHHHHHHHHHHHcCCeEEEEEeCChhhhhcCCCCCCCHHHHHHHHHHccCccEEEEcCCCcc
Q 021802           47 KKKKPVRVYMDGCFDMMHYGHCNALRQARALGDQLVVGVVSDAEIIANKGPPVTPLHERMIMVNAVKWVDEVISDAPYAI  126 (307)
Q Consensus        47 ~~~~~~~V~~~G~FD~lH~GH~~lL~qAk~~gd~LiVgV~sD~~i~~~Kg~pi~s~eER~~ll~~~k~VD~Vv~~~py~~  126 (307)
                      ..++.++||++||||++|.||+++|+||+++|++|+||+|+|+.+.+.|++|+++.+||++++++|+|||+|+++.||+.
T Consensus         7 ~~~~~~~v~~~G~FD~vH~GH~~~L~qAk~~g~~Livgv~~d~~i~~~K~~pi~~~eeR~~~l~~~~~VD~Vv~~~p~~~   86 (353)
T PTZ00308          7 KKPGTIRVWVDGCFDMLHFGHANALRQARALGDELFVGCHSDEEIMRNKGPPVMHQEERYEALRACKWVDEVVEGYPYTT   86 (353)
T ss_pred             CCCCcEEEEEEeecccCCHHHHHHHHHHHHhCCEEEEEeCCHHHHhhcCCCCCCCHHHHHHHHHhcCCccEEEECCCCCc
Confidence            34456899999999999999999999999999999999999999988888889999999999999999999999889987


Q ss_pred             cHHHHHHHHHhcCccEEEEcCCCCcCCCCCchHHHHHhCCEEEEcCCCCCCCHHHHHHHHHhhhhcCCccCcCCcchhhh
Q 021802          127 TKDFMKKLFDEYNIDYIIHGDDPCVLPDGTDAYELAKKAGRYKQIKRTEGVSSTDIVGRMLLCVRERSISDSHNHSSLQR  206 (307)
Q Consensus       127 t~dfle~ll~~l~~d~VV~GdD~~fg~~g~d~y~~lk~~g~v~vv~rt~~VSST~Ir~rIl~~~~~~~~~~~~~~~~~~~  206 (307)
                      +.+|+    ++++||+||||+||+||.+|.++|+.++++|++++++|++++|||+|++||++++++++.... . .+   
T Consensus        87 ~~~fI----~~l~~d~vv~GdD~~~g~~g~~~~~~lk~~G~~~~v~rt~g~STt~ii~ril~~~~~~~~~~~-~-~~---  157 (353)
T PTZ00308         87 RLEDL----ERLECDFVVHGDDISVDLNGRNSYQEIIDAGKFKVVKRTEGISTTDLVGRMLLCTKSHLLKSV-D-EV---  157 (353)
T ss_pred             hHHHH----HHhCCCEEEECCCCCCCCCccchHHHHHhCCeEEEEecCCCCCHHHHHHHHHHhhhccccccc-c-cc---
Confidence            77777    568999999999999999999999999999999999999999999999999999998653211 0 00   


Q ss_pred             hhccCCCccccccccccccccccccccceehcccCCCCCCCCCeEEEEeCcccccCHHHHHHHHHHHhCCCEEEEEEeCc
Q 021802          207 QFSHGHNQKVEERGSGGTRVSHFLPTSRRIVQFSNGKGPGPDARIIYIDGAFDLFHAGHVEILRIARGLGDFLLVGIHND  286 (307)
Q Consensus       207 ~~~~~~~~~~~~~~~~~~~~~~~~~t~~~i~~f~~~~~~~~~~~~v~~~G~FDl~H~GHi~~L~~a~~~g~~liVgv~~D  286 (307)
                      ++        ......|++.++|++|+++|+||+.+..|.+++++||++|+||+||.||+++|++|+++||+|||||++|
T Consensus       158 ~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kiv~~~G~FDl~H~GHi~~L~~A~~lgd~LIVgV~sD  229 (353)
T PTZ00308        158 QL--------ESSLFPYTPTSHCLTTSRKIVQFSNNRSPKPGDRIVYVDGSFDLFHIGHIRVLQKARELGDYLIVGVHED  229 (353)
T ss_pred             cc--------ccccccCCCcceeecchhheeeccccCCCCCCCeEEEECCccCCCCHHHHHHHHHHHHhCCEEEEEEcch
Confidence            00        0111125667899999999999999999988999999999999999999999999999999999999999


Q ss_pred             ccccccCC
Q 021802          287 QTVRLKNP  294 (307)
Q Consensus       287 ~~v~~~~~  294 (307)
                      +.++++|+
T Consensus       230 ~~v~~~Kg  237 (353)
T PTZ00308        230 QVVNEQKG  237 (353)
T ss_pred             HHhHhhcC
Confidence            99988664

>cd02174 CCT CTP:phosphocholine cytidylyltransferase

Probab=100.00  E-value=2.7e-32  Score=235.35  Aligned_cols=137  Identities=59%  Similarity=1.032  Sum_probs=126.8

Q ss_pred             CeEEEEecccCcCCHHHHHHHHHHHHcC--CeEEEEEeCChhhhhcCCCCCCCHHHHHHHHHHccCccEEEEcCCCcccH
Q 021802           51 PVRVYMDGCFDMMHYGHCNALRQARALG--DQLVVGVVSDAEIIANKGPPVTPLHERMIMVNAVKWVDEVISDAPYAITK  128 (307)
Q Consensus        51 ~~~V~~~G~FD~lH~GH~~lL~qAk~~g--d~LiVgV~sD~~i~~~Kg~pi~s~eER~~ll~~~k~VD~Vv~~~py~~t~  128 (307)
                      ++|||+.|+||++|.||+++|++|+++|  |+|+|||++|+.+..+|++|+++.+||.+++++|+|||+|+++.|+..+.
T Consensus         2 ~~rV~~~G~FDl~H~GHi~~L~~A~~lg~~d~LiVgV~sD~~~~~~k~~pi~~~~eR~~~l~~~~~Vd~Vi~~~~~~~~~   81 (150)
T cd02174           2 PVRVYVDGCFDLFHYGHANALRQAKKLGPNDYLIVGVHSDEEIHKHKGPPVMTEEERYEAVRHCKWVDEVVEGAPYVTTP   81 (150)
T ss_pred             CeEEEEeCccCCCCHHHHHHHHHHHHhCCCCEEEEEEecCHHHhhcCCCCcCCHHHHHHHHHhcCCCCeEEECCCCCChH
Confidence            5689999999999999999999999999  99999999999988888889999999999999999999999988887777


Q ss_pred             HHHHHHHHhcCccEEEEcCCCCcCCCCCchHHHHHhCCEEEEcCCCCCCCHHHHHHHHHhhhh
Q 021802          129 DFMKKLFDEYNIDYIIHGDDPCVLPDGTDAYELAKKAGRYKQIKRTEGVSSTDIVGRMLLCVR  191 (307)
Q Consensus       129 dfle~ll~~l~~d~VV~GdD~~fg~~g~d~y~~lk~~g~v~vv~rt~~VSST~Ir~rIl~~~~  191 (307)
                      +|+    ++++||++++|+||..+..+.+.|+.+++.|++.++++++++|||.|++||+....
T Consensus        82 ~~i----~~~~~d~vv~G~d~~~~~~~~~~~~~~~~~g~~~~~~~~~~~Stt~ii~rI~~~~~  140 (150)
T cd02174          82 EFL----DKYKCDYVAHGDDIYLDADGEDCYQEVKDAGRFKEVKRTEGVSTTDLIGRILLDYR  140 (150)
T ss_pred             HHH----HHhCCCEEEECCCCCCCCCchhHHHHHHhCCEEEEeCCCCCCCHHHHHHHHHHhHH
Confidence            776    46899999999999887777788999999999999999999999999999987654

CTP:phosphocholine cytidylyltransferase (CCT) catalyzes the condensation of CTP and phosphocholine to form CDP-choline as the rate-limiting and regulatory step in the CDP-choline pathway. CCT is unique in that its enzymatic activity is regulated by the extent of its association with membrane structures. A current model posts that the elastic stress of the bilayer curvature is sensed by CCT and this governs the degree of membrane association, thus providing a mechanism for both positive and negative regulation of activity.

>PLN02413 choline-phosphate cytidylyltransferase

Probab=100.00  E-value=2.8e-32  Score=254.12  Aligned_cols=140  Identities=41%  Similarity=0.728  Sum_probs=127.8

Q ss_pred             hcCCCCeEEEEecccCcCCHHHHHHHHHHHHcC--CeEEEEEeCChhhhhcCCCCCCCHHHHHHHHHHccCccEEEEcCC
Q 021802           46 RKKKKPVRVYMDGCFDMMHYGHCNALRQARALG--DQLVVGVVSDAEIIANKGPPVTPLHERMIMVNAVKWVDEVISDAP  123 (307)
Q Consensus        46 ~~~~~~~~V~~~G~FD~lH~GH~~lL~qAk~~g--d~LiVgV~sD~~i~~~Kg~pi~s~eER~~ll~~~k~VD~Vv~~~p  123 (307)
                      ++..++++||++||||+||.||+++|+||++++  ++|||||++|+.+...||+|+|+++||+++|++|||||+|++++|
T Consensus        22 ~~~~r~~rVyvdG~FDLfH~GHir~L~qAK~lg~~d~LIVGV~sDe~v~~~KGrPIm~~~ER~e~V~acKyVDeVV~~aP  101 (294)
T PLN02413         22 SPSDRPVRVYADGIYDLFHFGHARSLEQAKKLFPNTYLLVGCCNDELTHKYKGKTVMTEDERYESLRHCKWVDEVIPDAP  101 (294)
T ss_pred             CCCCCceEEEEeCchhhCCHHHHHHHHHHHHhCCCCEEEEEecccHHHHhcCCCCCCCHHHHHHHHHhcccccEEeeCCC
Confidence            456788899999999999999999999999996  799999999999999999999999999999999999999999999


Q ss_pred             CcccHHHHHHHHHhcCccEEEEcCCCCcCC--CCCchHHHHHhCCEEEEcCCCCCCCHHHHHHHHHhh
Q 021802          124 YAITKDFMKKLFDEYNIDYIIHGDDPCVLP--DGTDAYELAKKAGRYKQIKRTEGVSSTDIVGRMLLC  189 (307)
Q Consensus       124 y~~t~dfle~ll~~l~~d~VV~GdD~~fg~--~g~d~y~~lk~~g~v~vv~rt~~VSST~Ir~rIl~~  189 (307)
                      |.++++|++    +++||++|||+++....  .+.|.|..++++|++..++|++++|||+|++||+..
T Consensus       102 ~~~t~efI~----~~kpDiVvhGd~~~~d~~~~g~D~Y~~vK~~G~f~~i~Rt~gvSTTdII~RIlk~  165 (294)
T PLN02413        102 WVITQEFLD----KHRIDYVAHDALPYADASGAGKDVYEFVKKIGKFKETKRTDGISTSDIIMRIVKD  165 (294)
T ss_pred             ccccHHHHH----HhCCCEEEECCCCCccccccCchhHHHHHHCCeEEEecCCCCcCHHHHHHHHHHH
Confidence            998889984    58999999998655332  456899999999999999999999999999999864

>COG0615 TagD Cytidylyltransferase [Cell envelope biogenesis, outer membrane / Lipid metabolism]

Probab=99.97  E-value=1.9e-31  Score=226.20  Aligned_cols=131  Identities=41%  Similarity=0.724  Sum_probs=116.1

Q ss_pred             eEEEEecccCcCCHHHHHHHHHHHHcCCeEEEEEeCChhhhh-cCCCCCCCHHHHHHHHHHccCccEEEEcCCCcccHHH
Q 021802           52 VRVYMDGCFDMMHYGHCNALRQARALGDQLVVGVVSDAEIIA-NKGPPVTPLHERMIMVNAVKWVDEVISDAPYAITKDF  130 (307)
Q Consensus        52 ~~V~~~G~FD~lH~GH~~lL~qAk~~gd~LiVgV~sD~~i~~-~Kg~pi~s~eER~~ll~~~k~VD~Vv~~~py~~t~df  130 (307)
                      +|||++||||++|.||+++|+||+++||+|+|.+.+|+.+.. +|++|+|+++||++++++|||||+|++++||+++.++
T Consensus         2 ~rV~~~GtFDilH~GHi~~L~~Ak~lGd~liVv~a~de~~~~~~k~~pi~~~~qR~evl~s~ryVD~vi~~~p~~~~~~~   81 (140)
T COG0615           2 KRVWADGTFDILHPGHIEFLRQAKKLGDELIVVVARDETVIKRKKRKPIMPEEQRAEVLESLRYVDEVILGAPWDIKFED   81 (140)
T ss_pred             cEEEEeeEEEEechhHHHHHHHHHHhCCeEEEEEeccHHHHHhcCCCCCCCHHHHHHHHHcCcchheeeeCCccccChHH
Confidence            469999999999999999999999999998888888776655 5669999999999999999999999999999987787


Q ss_pred             HHHHHHhcCccEEEEcCCCCcCCCCCchHHHHHhCCEEEEcCCCCC------CCHHHHHHHHHh
Q 021802          131 MKKLFDEYNIDYIIHGDDPCVLPDGTDAYELAKKAGRYKQIKRTEG------VSSTDIVGRMLL  188 (307)
Q Consensus       131 le~ll~~l~~d~VV~GdD~~fg~~g~d~y~~lk~~g~v~vv~rt~~------VSST~Ir~rIl~  188 (307)
                      +    ++++||+|++|+|+. +..+.+.|+..+ .|.+..++|+++      +||++|.+|++.
T Consensus        82 i----~~~k~Div~lG~D~~-~d~~~l~~~~~k-~G~~~~v~R~~g~~~~~~~st~~i~~~i~~  139 (140)
T COG0615          82 I----EEYKPDIVVLGDDQK-FDEDDLKYELVK-RGLFVEVKRTEGVSTCELISTSDIIKRILE  139 (140)
T ss_pred             H----HHhCCCEEEECCCCc-CChHHHHHHHHH-cCCeeEEEeccCcccCcccchHHHHHHHhc
Confidence            7    468999999999999 556667777666 899999999987      899999998863

>PLN02406 ethanolamine-phosphate cytidylyltransferase

Probab=99.97  E-value=2.1e-30  Score=254.18  Aligned_cols=145  Identities=34%  Similarity=0.645  Sum_probs=130.6

Q ss_pred             HHhHhhhcCCCCeEEEEecccCcCCHHHHHHHHHHHHcCCeEEEEEeCChhhhhcCC--CCCCCHHHHHHHHHHccCccE
Q 021802           40 RWLQWTRKKKKPVRVYMDGCFDMMHYGHCNALRQARALGDQLVVGVVSDAEIIANKG--PPVTPLHERMIMVNAVKWVDE  117 (307)
Q Consensus        40 ~~~~~~~~~~~~~~V~~~G~FD~lH~GH~~lL~qAk~~gd~LiVgV~sD~~i~~~Kg--~pi~s~eER~~ll~~~k~VD~  117 (307)
                      +..++..+.+..++||++||||+||.||+++|++|+++||+|+|||++|+.+...||  +|+|+++||.+++++|+|||+
T Consensus       240 qf~~g~~p~~~~~iVyv~G~FDlfH~GHi~~L~~Ak~lGd~LIVGV~sD~~v~~~KG~~~Pi~~~~ER~~~v~ack~VD~  319 (418)
T PLN02406        240 QFSNGKGPGPDARIVYIDGAFDLFHAGHVEILRLARALGDFLLVGIHTDQTVSAHRGAHRPIMNLHERSLSVLACRYVDE  319 (418)
T ss_pred             HHhccCCCCCCCeEEEECCeeccCCHHHHHHHHHHHHhCCEEEEEEeccHHHHHhcCCCCCCCCHHHHHHHHhccCcccE
Confidence            344444566677789999999999999999999999999999999999999988887  799999999999999999999


Q ss_pred             EEEcCCCcccHHHHHHHHHhcCccEEEEcCCCC---cCCCCCchHHHHHhCCEEEEcCCCCCCCHHHHHHHHHh
Q 021802          118 VISDAPYAITKDFMKKLFDEYNIDYIIHGDDPC---VLPDGTDAYELAKKAGRYKQIKRTEGVSSTDIVGRMLL  188 (307)
Q Consensus       118 Vv~~~py~~t~dfle~ll~~l~~d~VV~GdD~~---fg~~g~d~y~~lk~~g~v~vv~rt~~VSST~Ir~rIl~  188 (307)
                      |++++||.+++++++    +++||++|||+|+.   +..++.|.|...+++|+++++++++++|||+|++||+.
T Consensus       320 VVi~ap~~~~~~~i~----~~~~d~vvhG~~~~~~~~~~~~~D~Y~v~k~~G~~~~i~~~~~iSTt~II~RI~~  389 (418)
T PLN02406        320 VIIGAPWEVSKDMIT----TFNISLVVHGTVAENNDFLKGEDDPYAVPKSMGIFQVLESPLDITTSTIIRRIVA  389 (418)
T ss_pred             EEeCCCCCCCHHHHH----HhCCCEEEECCcCCCccccCCCCcchHHHhcCceEEEeCCCCCCcHHHHHHHHHH
Confidence            999999998888874    68999999999763   33456799999999999999999999999999999985

>cd02173 ECT CTP:phosphoethanolamine cytidylyltransferase (ECT)

Probab=99.97  E-value=5e-30  Score=221.64  Aligned_cols=134  Identities=41%  Similarity=0.741  Sum_probs=121.6

Q ss_pred             eEEEEecccCcCCHHHHHHHHHHHHcCCeEEEEEeCChhhhhcCC--CCCCCHHHHHHHHHHccCccEEEEcCCCcccHH
Q 021802           52 VRVYMDGCFDMMHYGHCNALRQARALGDQLVVGVVSDAEIIANKG--PPVTPLHERMIMVNAVKWVDEVISDAPYAITKD  129 (307)
Q Consensus        52 ~~V~~~G~FD~lH~GH~~lL~qAk~~gd~LiVgV~sD~~i~~~Kg--~pi~s~eER~~ll~~~k~VD~Vv~~~py~~t~d  129 (307)
                      +.||+.|+||++|.||+++|++|+++||+|+|||++|+.+...|+  +|++|++||++++++|+|||+|++..|+.++.+
T Consensus         3 ~iv~~~G~FD~~H~GHi~~L~~A~~lgd~liVgV~~D~~~~~~K~~~~pi~~~~eR~~~v~~~~~Vd~V~v~~~~~~~~~   82 (152)
T cd02173           3 KVVYVDGAFDLFHIGHIEFLEKARELGDYLIVGVHDDQTVNEYKGSNYPIMNLHERVLSVLACRYVDEVVIGAPYVITKE   82 (152)
T ss_pred             eEEEEcCcccCCCHHHHHHHHHHHHcCCEEEEEEeCcHHHHhhcCCCCCCCCHHHHHHHHHhcCCCCEEEECCCCcchHH
Confidence            469999999999999999999999999999999999999887786  599999999999999999999999888877777


Q ss_pred             HHHHHHHhcCccEEEEcCCCCcC--CCCCchHHHHHhCCEEEEcCCCCCCCHHHHHHHHHhh
Q 021802          130 FMKKLFDEYNIDYIIHGDDPCVL--PDGTDAYELAKKAGRYKQIKRTEGVSSTDIVGRMLLC  189 (307)
Q Consensus       130 fle~ll~~l~~d~VV~GdD~~fg--~~g~d~y~~lk~~g~v~vv~rt~~VSST~Ir~rIl~~  189 (307)
                      |+    ++++||++++|+|+...  ..+.+.|..++++|++..+++++++|||+|++||+..
T Consensus        83 ~~----~~~~~d~vv~G~d~~~~~~~~~~~~~~~~~~~G~~~~v~~~~~~Sts~Ii~rI~~~  140 (152)
T cd02173          83 LI----EHFKIDVVVHGKTEETPDSLDGEDPYAVPKEMGIFKEIDSGSDLTTRDIVNRIIKN  140 (152)
T ss_pred             HH----HHhCCCEEEECCCCccccccCchHHHHHHHhCCeEEEecCCCCCCHHHHHHHHHHh
Confidence            76    46899999999999754  2466889999999999999999999999999999743

CTP:phosphoethanolamine cytidylyltransferase (ECT) catalyzes the conversion of phosphoethanolamine to CDP-ethanolamine as part of the CDP-ethanolamine biosynthesis pathway. ECT expression in hepatocytes is localized predominantly to areas of the cytoplasm that are rich in rough endoplasmic reticulum. Several ECTs, including yeast and human ECT, have large repetitive sequences located within their N- and C-termini.

>KOG2804 consensus Phosphorylcholine transferase/cholinephosphate cytidylyltransferase [Lipid transport and metabolism]

Probab=99.97  E-value=4.4e-31  Score=245.85  Aligned_cols=139  Identities=40%  Similarity=0.672  Sum_probs=128.2

Q ss_pred             cCCCCeEEEEecccCcCCHHHHHHHHHHHHcC--CeEEEEEeCChhhhhcCCCCCCCHHHHHHHHHHccCccEEEEcCCC
Q 021802           47 KKKKPVRVYMDGCFDMMHYGHCNALRQARALG--DQLVVGVVSDAEIIANKGPPVTPLHERMIMVNAVKWVDEVISDAPY  124 (307)
Q Consensus        47 ~~~~~~~V~~~G~FD~lH~GH~~lL~qAk~~g--d~LiVgV~sD~~i~~~Kg~pi~s~eER~~ll~~~k~VD~Vv~~~py  124 (307)
                      +..+|+|||++|.||+||+||++.|+|||.++  -+|+|||.+|+..++.||..||+.+||++.|++|||||+|+.++||
T Consensus        59 p~~RPVRVYADGIyDLFH~GHarqL~QaK~~FPNvyLiVGvc~De~Thk~KG~TVm~e~ERyE~lrHCryVDEVi~~APW  138 (348)
T KOG2804|consen   59 PTDRPVRVYADGIYDLFHYGHARQLEQAKKLFPNVYLIVGVCSDELTHKFKGRTVMNENERYEALRHCRYVDEVIPNAPW  138 (348)
T ss_pred             CCCCceEEEccchHHHhhhhHHHHHHHHHHhCCCeEEEEeecCchhhhhccCceecChHHHHHHhhhhhhhhhhccCCCc
Confidence            36789999999999999999999999999997  4699999999998999999999999999999999999999999999


Q ss_pred             cccHHHHHHHHHhcCccEEEEcCCCCcCCCCCchHHHHHhCCEEEEcCCCCCCCHHHHHHHHHhh
Q 021802          125 AITKDFMKKLFDEYNIDYIIHGDDPCVLPDGTDAYELAKKAGRYKQIKRTEGVSSTDIVGRMLLC  189 (307)
Q Consensus       125 ~~t~dfle~ll~~l~~d~VV~GdD~~fg~~g~d~y~~lk~~g~v~vv~rt~~VSST~Ir~rIl~~  189 (307)
                      .+|++||+    ++++|+|.|-+-+....+..|.|..+|+.|+|...+||+||||++|+.||..-
T Consensus       139 ~lt~EFL~----~HKIDfVAHDdIPY~s~gsdDiY~~vK~~G~F~~T~RTeGvSTSDiI~rIVrD  199 (348)
T KOG2804|consen  139 TLTPEFLE----KHKIDFVAHDDIPYVSAGSDDIYKPVKEAGMFLPTQRTEGVSTSDIITRIVRD  199 (348)
T ss_pred             cccHHHHH----hcccceeeccCccccCCCchhHHHHHHHhcccccccccCCccHHHHHHHHHHh
Confidence            99999985    58999999987776655555899999999999999999999999999999753

>PTZ00308 ethanolamine-phosphate cytidylyltransferase; Provisional

Probab=99.96  E-value=1.1e-28  Score=238.81  Aligned_cols=136  Identities=35%  Similarity=0.638  Sum_probs=124.7

Q ss_pred             CCCeEEEEecccCcCCHHHHHHHHHHHHcCCeEEEEEeCChhhhhcCC--CCCCCHHHHHHHHHHccCccEEEEcCCCcc
Q 021802           49 KKPVRVYMDGCFDMMHYGHCNALRQARALGDQLVVGVVSDAEIIANKG--PPVTPLHERMIMVNAVKWVDEVISDAPYAI  126 (307)
Q Consensus        49 ~~~~~V~~~G~FD~lH~GH~~lL~qAk~~gd~LiVgV~sD~~i~~~Kg--~pi~s~eER~~ll~~~k~VD~Vv~~~py~~  126 (307)
                      ...++||+.||||++|.||+++|++|+++||+|+|||++|+.+...|+  +|+|+++||++++++|+|||+|++.+|+.+
T Consensus       190 ~~~kiv~~~G~FDl~H~GHi~~L~~A~~lgd~LIVgV~sD~~v~~~Kg~~~Pi~~~~eR~~~v~a~~~Vd~Vvi~~~~~~  269 (353)
T PTZ00308        190 PGDRIVYVDGSFDLFHIGHIRVLQKARELGDYLIVGVHEDQVVNEQKGSNYPIMNLNERVLGVLSCRYVDEVVIGAPFDV  269 (353)
T ss_pred             CCCeEEEECCccCCCCHHHHHHHHHHHHhCCEEEEEEcchHHhHhhcCCCCCCCCHHHHHHHHHhhCCCCeEEEcCCCCC
Confidence            345689999999999999999999999999999999999999988887  599999999999999999999999889887


Q ss_pred             cHHHHHHHHHhcCccEEEEcCCCCc--CCCCCchHHHHHhCCEEEEcCCCCCCCHHHHHHHHHh
Q 021802          127 TKDFMKKLFDEYNIDYIIHGDDPCV--LPDGTDAYELAKKAGRYKQIKRTEGVSSTDIVGRMLL  188 (307)
Q Consensus       127 t~dfle~ll~~l~~d~VV~GdD~~f--g~~g~d~y~~lk~~g~v~vv~rt~~VSST~Ir~rIl~  188 (307)
                      +.+|+    ++++||++|+|+|+..  ..++.|+|...+.+|++..+++++++|||+|++||+.
T Consensus       270 ~~~~i----~~~~~d~vv~G~d~~~~~~~~~~d~y~~~k~~G~~~~i~~~~~~sTt~ii~RI~~  329 (353)
T PTZ00308        270 TKEVI----DSLHINVVVGGKFSDLVNEEGGSDPYEVPKAMGIFKEVDSGCDLTTDSIVDRVVK  329 (353)
T ss_pred             hHHHH----HHhCCCEEEECCCCccccCCCcccchHHHhcCceEEEeCCCCCccHHHHHHHHHH
Confidence            88887    4689999999999974  5556899999999999999999999999999999973

>cd02170 cytidylyltransferase cytidylyltransferase

Probab=99.96  E-value=5.9e-28  Score=203.26  Aligned_cols=132  Identities=42%  Similarity=0.673  Sum_probs=117.7

Q ss_pred             eEEEEecccCcCCHHHHHHHHHHHHcCCeEEEEEeCChhhhhcCCCCCCCHHHHHHHHHHccCccEEEEcCCCcccHHHH
Q 021802           52 VRVYMDGCFDMMHYGHCNALRQARALGDQLVVGVVSDAEIIANKGPPVTPLHERMIMVNAVKWVDEVISDAPYAITKDFM  131 (307)
Q Consensus        52 ~~V~~~G~FD~lH~GH~~lL~qAk~~gd~LiVgV~sD~~i~~~Kg~pi~s~eER~~ll~~~k~VD~Vv~~~py~~t~dfl  131 (307)
                      ++++++|+||++|.||++++++|++.+++++|++++|+.+.+.|++++++.+||++++++|+|||.+++..|+    +|+
T Consensus         2 ~~v~~~G~FD~~H~GH~~ll~~a~~~~~~l~v~v~~~~~~~~~~~~~~~~~~eR~~~l~~~~~vd~v~~~~~~----~~~   77 (136)
T cd02170           2 KRVYAAGTFDIIHPGHIRFLEEAKKLGDYLIVGVARDETVAKIKRRPILPEEQRAEVVEALKYVDEVILGHPW----SYF   77 (136)
T ss_pred             eEEEEcCccCCCCHHHHHHHHHHHHhCCEEEEEECCcHHHHhcCCCCCCCHHHHHHHHHcCCCcCEEEECCCC----CHh
Confidence            4799999999999999999999999999999999999877666667999999999999999999999987665    455


Q ss_pred             HHHHHhcCccEEEEcCCCCcCCCCCchHHHHHhCCEEEEcC--CCCCCCHHHHHHHHHh
Q 021802          132 KKLFDEYNIDYIIHGDDPCVLPDGTDAYELAKKAGRYKQIK--RTEGVSSTDIVGRMLL  188 (307)
Q Consensus       132 e~ll~~l~~d~VV~GdD~~fg~~g~d~y~~lk~~g~v~vv~--rt~~VSST~Ir~rIl~  188 (307)
                      +.+ .+++++++|+|+|++||+++.+.|+.+++.|.+.++.  ++++||||+||++|+.
T Consensus        78 ~~l-~~~~~~~vv~G~d~~fg~~~~~~~~~l~~~g~~~~~~~~~~~~vSSt~Ir~~i~~  135 (136)
T cd02170          78 KPL-EELKPDVIVLGDDQKNGVDEEEVYEELKKRGKVIEVPRKKTEGISSSDIIKRILE  135 (136)
T ss_pred             HHH-HHHCCCEEEECCCCCCCCcchhHHHHHHHCCeEEEECCCCCCCCcHHHHHHHHHh
Confidence            543 4578999999999999998889999999999888888  7889999999999963

The cytidylyltransferase family includes cholinephosphate cytidylyltransferase (CCT), glycerol-3-phosphate cytidylyltransferase, RafE and phosphoethanolamine cytidylyltransferase (ECT). All enzymes catalyze the transfer of a cytidylyl group from CTP to various substrates.

>cd02172 RfaE_N N-terminal domain of RfaE

Probab=99.96  E-value=5.1e-28  Score=207.01  Aligned_cols=131  Identities=26%  Similarity=0.360  Sum_probs=114.7

Q ss_pred             eEEEEecccCcCCHHHHHHHHHHHHcCCeEEEEEeCChhhhhcCCCCCCCHHHHHHHHHHccCccEEEEcCCCcccHHHH
Q 021802           52 VRVYMDGCFDMMHYGHCNALRQARALGDQLVVGVVSDAEIIANKGPPVTPLHERMIMVNAVKWVDEVISDAPYAITKDFM  131 (307)
Q Consensus        52 ~~V~~~G~FD~lH~GH~~lL~qAk~~gd~LiVgV~sD~~i~~~Kg~pi~s~eER~~ll~~~k~VD~Vv~~~py~~t~dfl  131 (307)
                      ..|+++|+||++|.||+++|++|+++++.++|++.+|+.+...+.+|++|.+||.+++++|+|||.+++ .|+..+++|+
T Consensus         5 ~~vv~~G~FDgvH~GH~~ll~~a~~~~~~~vv~~~~d~~~~~~~~~~i~~~~eR~~~l~~lg~VD~vi~-~~~~~~~~fi   83 (144)
T cd02172           5 TVVLCHGVFDLLHPGHVRHLQAARSLGDILVVSLTSDRYVNKGPGRPIFPEDLRAEVLAALGFVDYVVL-FDNPTALEII   83 (144)
T ss_pred             EEEEEecccCCCCHHHHHHHHHHHHhCCeEEEEEeChHHhccCCCCCCCCHHHHHHHHHccCCccEEEE-CCCCCHHHHH
Confidence            469999999999999999999999999999999999987765555799999999999999988999999 6776667887


Q ss_pred             HHHHHhcCccEEEEcCCCCcCCCC-----CchHHHHHhC-CEEEEcCCCCCCCHHHHHHHHHh
Q 021802          132 KKLFDEYNIDYIIHGDDPCVLPDG-----TDAYELAKKA-GRYKQIKRTEGVSSTDIVGRMLL  188 (307)
Q Consensus       132 e~ll~~l~~d~VV~GdD~~fg~~g-----~d~y~~lk~~-g~v~vv~rt~~VSST~Ir~rIl~  188 (307)
                      +    ++++++||+|+||+||.++     .+.++.+++. +++... +++++|||+|++||+.
T Consensus        84 ~----~l~~~~vv~G~d~~fg~~~~~~~~~g~~~~l~~~g~~~~~~-~~~~~sts~li~~i~~  141 (144)
T cd02172          84 D----ALQPNIYVKGGDYENPENDVTGKIAPEAEAVKAYGGKIVFT-GEIVFSSSALINRIFD  141 (144)
T ss_pred             H----HhCCCEEEECCCcccCccccccchhhhHHHHHHhCCEEEEe-cCCCcchHHHHHHHHh
Confidence            4    5899999999999999875     5667777776 456666 9999999999999964

RfaE is a protein involved in the biosynthesis of ADP-L-glycero-D-manno-heptose, a precursor for LPS inner core biosynthesis. RfaE is a bifunctional protein in Escherichia coli, and separate proteins in other organisms. Domain I is suggested to act in D-glycero-D-manno-heptose 1-phosphate biosynthesis, while domain II (this family) adds ADP to yield ADP-D-glycero-D-manno-heptose .

>TIGR02199 rfaE_dom_II rfaE bifunctional protein, domain II

Probab=99.95  E-value=1.1e-26  Score=198.68  Aligned_cols=130  Identities=36%  Similarity=0.545  Sum_probs=109.3

Q ss_pred             CeEEEEecccCcCCHHHHHHHHHHHHcCCeEEEEEeCChhhhhcCC--CCCCCHHHHHHHHHHccCccEEEEcCCCcccH
Q 021802           51 PVRVYMDGCFDMMHYGHCNALRQARALGDQLVVGVVSDAEIIANKG--PPVTPLHERMIMVNAVKWVDEVISDAPYAITK  128 (307)
Q Consensus        51 ~~~V~~~G~FD~lH~GH~~lL~qAk~~gd~LiVgV~sD~~i~~~Kg--~pi~s~eER~~ll~~~k~VD~Vv~~~py~~t~  128 (307)
                      ..+|+++|+||++|.||+++|++|++.++.++|++++|+.....|+  +|+++.+||.+++++|+|||++++..+. .++
T Consensus        11 ~~~v~~~G~FDgvH~GH~~ll~~a~~~~~~~~v~v~~d~~~~~~k~~~~~l~~~eeR~~~l~~~~~VD~vi~f~~~-~~~   89 (144)
T TIGR02199        11 KKIVFTNGCFDILHAGHVSYLQQARALGDRLVVGVNSDASVKRLKGETRPINPEEDRAEVLAALSSVDYVVIFDED-TPE   89 (144)
T ss_pred             CCEEEEeCcccccCHHHHHHHHHHHHhCCccEEEEECCcCHHHhCCCCCCcCCHHHHHHHHHhcCCCCEEEECCCC-CHH
Confidence            3569999999999999999999999999999999999997654444  5899999999999999999999984332 346


Q ss_pred             HHHHHHHHhcCccEEEEcCCCCcCCCCCchHHHHHh-CCEEEEcCCCCCCCHHHHHHHHH
Q 021802          129 DFMKKLFDEYNIDYIIHGDDPCVLPDGTDAYELAKK-AGRYKQIKRTEGVSSTDIVGRML  187 (307)
Q Consensus       129 dfle~ll~~l~~d~VV~GdD~~fg~~g~d~y~~lk~-~g~v~vv~rt~~VSST~Ir~rIl  187 (307)
                      +|++    +++++++|+|+||+|..  ...++.+++ ++++.++++++++|||+||+||+
T Consensus        90 ~fi~----~l~~~~vv~G~d~~~~~--~~~~~~~~~~g~~v~~~~~~~~iSSs~Ir~ri~  143 (144)
T TIGR02199        90 ELIG----ELKPDILVKGGDYKVET--LVGAELVESYGGQVVLLPFVEGRSTTAIIEKIL  143 (144)
T ss_pred             HHHH----HhCCCEEEECCCCCCCc--chhHHHHHHcCCEEEEEeCCCCcCHHHHHHHHh
Confidence            7774    68999999999999832  223455555 47999999999999999999995

RfaE is a protein involved in the biosynthesis of ADP-L-glycero-D-manno-heptose, a precursor for LPS inner core biosynthesis. RfaE is a bifunctional protein in E. coli, and separate proteins in some other genome. Domain I (TIGR02198) is suggested to act in D-glycero-D-manno-heptose 1-phosphate biosynthesis, while domain II (this family) adds ADP to yield ADP-D-glycero-D-manno-heptose.

>TIGR01518 g3p_cytidyltrns glycerol-3-phosphate cytidylyltransferase

Probab=99.94  E-value=1e-26  Score=193.78  Aligned_cols=123  Identities=29%  Similarity=0.533  Sum_probs=102.6

Q ss_pred             EEEecccCcCCHHHHHHHHHHHHcCCeEEEEEeCChhhhhcCCCCCCCHHHHHHHHHHccCccEEEEcCCCcccHHHHHH
Q 021802           54 VYMDGCFDMMHYGHCNALRQARALGDQLVVGVVSDAEIIANKGPPVTPLHERMIMVNAVKWVDEVISDAPYAITKDFMKK  133 (307)
Q Consensus        54 V~~~G~FD~lH~GH~~lL~qAk~~gd~LiVgV~sD~~i~~~Kg~pi~s~eER~~ll~~~k~VD~Vv~~~py~~t~dfle~  133 (307)
                      |+++|+||++|.||+++|++|+++|++++|+|++|+.....+.+|+++.+||++++++|+|||+++...|+   ++|++.
T Consensus         1 v~~~G~FDg~H~GH~~~l~~a~~~~~~~iv~v~~d~~~~~~~~~~i~~~eeR~~~l~~~~~Vd~vi~~~~~---~~f~~~   77 (125)
T TIGR01518         1 VLTYGTFDLLHWGHINLLERAKQLGDYLIVALSTDEFNLQKQKKAYHSYEHRKLILETIRYVDLVIPEKSW---EQKKQD   77 (125)
T ss_pred             CEEcceeCCCCHHHHHHHHHHHHcCCEEEEEEechHHHhhcCCCCCCCHHHHHHHHHcCCCccEEecCCCc---cchHHH
Confidence            57899999999999999999999999999999999866544447899999999999999999999775554   356655


Q ss_pred             HHHhcCccEEEEcCCCCcCCCCCchHHHHHhC--CEEEEcCCCCCCCHHHHHHHH
Q 021802          134 LFDEYNIDYIIHGDDPCVLPDGTDAYELAKKA--GRYKQIKRTEGVSSTDIVGRM  186 (307)
Q Consensus       134 ll~~l~~d~VV~GdD~~fg~~g~d~y~~lk~~--g~v~vv~rt~~VSST~Ir~rI  186 (307)
                      + +++++|++++|+||.      ++++.+++.  +++.+++++++||||.||+.|
T Consensus        78 l-~~~~~~~vv~G~D~~------g~~~~l~~~~~~~v~~v~~~~~vSST~Ir~~~  125 (125)
T TIGR01518        78 I-IDFNIDVFVMGDDWE------GKFDFLKDECPLKVVYLPRTEGVSTTKIKKEI  125 (125)
T ss_pred             H-HHcCCCEEEECCCcc------chHHHHhhccCcEEEEeCCCCCccHHHHHhhC
Confidence            4 689999999999993      234555543  577789999999999999864

Glycerol-3-phosphate cytidyltransferase acts in pathways of teichoic acid biosynthesis. Teichoic acids are substituted polymers, linked by phosphodiester bonds, of glycerol, ribitol, etc. An example is poly(glycerol phosphate), the major teichoic acid of the Bacillus subtilis cell wall. Most but not all species encoding proteins in this family are Gram-positive bacteria.

>cd02171 G3P_Cytidylyltransferase glycerol-3-phosphate cytidylyltransferase

Probab=99.93  E-value=1.8e-25  Score=186.50  Aligned_cols=126  Identities=33%  Similarity=0.554  Sum_probs=106.8

Q ss_pred             eEEEEecccCcCCHHHHHHHHHHHHcCCeEEEEEeCChhhhhcCC-CCCCCHHHHHHHHHHccCccEEEEcCCCcccHHH
Q 021802           52 VRVYMDGCFDMMHYGHCNALRQARALGDQLVVGVVSDAEIIANKG-PPVTPLHERMIMVNAVKWVDEVISDAPYAITKDF  130 (307)
Q Consensus        52 ~~V~~~G~FD~lH~GH~~lL~qAk~~gd~LiVgV~sD~~i~~~Kg-~pi~s~eER~~ll~~~k~VD~Vv~~~py~~t~df  130 (307)
                      ++|+++|+||++|.||+.+|++|+++++++++++++|+.. ..++ ++++|.+||++++++|+|||+++...+|   ++|
T Consensus         2 ~~v~~~G~FDgvH~GH~~ll~~a~~~~~~l~v~v~~d~~~-~~~~~~~~~~~~~R~~~l~~~~~vd~v~~~~~~---~~f   77 (129)
T cd02171           2 KVVITYGTFDLLHIGHLNLLERAKALGDKLIVAVSTDEFN-AGKGKKAVIPYEQRAEILESIRYVDLVIPETNW---EQK   77 (129)
T ss_pred             cEEEEeeeeccCCHHHHHHHHHHHHhCCEEEEEEeccHhH-HhcCCCCCCCHHHHHHHHHcCCccCEEecCCCc---cCh
Confidence            4699999999999999999999999999999999988743 2333 6899999999999999899999753333   356


Q ss_pred             HHHHHHhcCccEEEEcCCCCcCCCCCchHHHHHhCCEEEEcCCCCCCCHHHHHHHHHh
Q 021802          131 MKKLFDEYNIDYIIHGDDPCVLPDGTDAYELAKKAGRYKQIKRTEGVSSTDIVGRMLL  188 (307)
Q Consensus       131 le~ll~~l~~d~VV~GdD~~fg~~g~d~y~~lk~~g~v~vv~rt~~VSST~Ir~rIl~  188 (307)
                      ++.+ ++++++++++|+||.      +.++.+++.+++.+++++.++|||.||++|..
T Consensus        78 ~~~~-~~l~~~~vv~G~d~~------g~~~~l~~~~~v~~~~~~~~iSSt~Ir~~i~~  128 (129)
T cd02171          78 IEDI-KKYNVDVFVMGDDWE------GKFDFLKEYCEVVYLPRTKGISSTQLKEMLKK  128 (129)
T ss_pred             HHHH-HHhCCCEEEECCCCc------chHHHHHhCcEEEEeCCCCCcChHHHHHHHhh
Confidence            6554 679999999999983      35678888899999999999999999999853

Glycerol-3-phosphate cytidylyltransferase,(CDP-glycerol pyrophosphorylase). Glycerol-3-phosphate cytidyltransferase acts in pathways of teichoic acid biosynthesis. Teichoic acids are substituted polymers, linked by phosphodiester bonds, of glycerol, ribitol, etc. An example is poly(glycerol phosphate), the major teichoic acid of the Bacillus subtilis cell wall. Most, but not all, species encoding proteins in this family are Gram-positive bacteria. A closely related protein assigned a different function experimentally is a human ethanolamine-phosphate cytidylyltransferase.

>PRK07143 hypothetical protein; Provisional

Probab=99.90  E-value=1.2e-22  Score=191.36  Aligned_cols=139  Identities=15%  Similarity=0.243  Sum_probs=115.9

Q ss_pred             CCCCeEEEEecccCcCCHHHHHHHHHHHHcCCeEEEEEeCChhhhhcCC-CCCCCHHHHHHHHHHccCccEEEEcCCCc-
Q 021802           48 KKKPVRVYMDGCFDMMHYGHCNALRQARALGDQLVVGVVSDAEIIANKG-PPVTPLHERMIMVNAVKWVDEVISDAPYA-  125 (307)
Q Consensus        48 ~~~~~~V~~~G~FD~lH~GH~~lL~qAk~~gd~LiVgV~sD~~i~~~Kg-~pi~s~eER~~ll~~~k~VD~Vv~~~py~-  125 (307)
                      ......++++|+|||+|.||+++|++|++.++.++|...++|.....+. ++++|.+||.++++++ ++|.+++ .||+ 
T Consensus        12 ~~~~~~vvaiG~FDGvH~GHq~Ll~~a~~~~~~~vV~tF~~P~~~~~~~~~~l~~~~er~~~l~~~-Gvd~~~~-~~F~~   89 (279)
T PRK07143         12 FKFEKPTFVLGGFESFHLGHLELFKKAKESNDEIVIVIFKNPENLPKNTNKKFSDLNSRLQTLANL-GFKNIIL-LDFNE   89 (279)
T ss_pred             CCCCCeEEEEccCCcCCHHHHHHHHHHHHCCCcEEEEEeCChHHhcccCcccCCCHHHHHHHHHHC-CCCEEEE-eCCCH
Confidence            3344569999999999999999999999998887776666665322222 5799999999999999 9999999 8886 


Q ss_pred             -----ccHHHHHHHHHhcCccEEEEcCCCCcCCCCCchHHHHHhCC-EEEEcCC----CCCCCHHHHHHHHHhh
Q 021802          126 -----ITKDFMKKLFDEYNIDYIIHGDDPCVLPDGTDAYELAKKAG-RYKQIKR----TEGVSSTDIVGRMLLC  189 (307)
Q Consensus       126 -----~t~dfle~ll~~l~~d~VV~GdD~~fg~~g~d~y~~lk~~g-~v~vv~r----t~~VSST~Ir~rIl~~  189 (307)
                           .+++|++.++. ++++.||+|+||+||+++.+.++.+++.+ .+.+++.    ...||||.||+.|.++
T Consensus        90 ~~a~ls~e~Fi~~ll~-l~~~~iVvG~Df~FG~~r~G~~~~L~~~~~~v~~v~~~~~~g~~ISST~IR~~l~~G  162 (279)
T PRK07143         90 ELQNLSGNDFIEKLTK-NQVSFFVVGKDFRFGKNASWNADDLKEYFPNVHIVEILKINQQKISTSLLKEFIEFG  162 (279)
T ss_pred             HHhCCCHHHHHHHHHh-cCCCEEEECCCcccCCCCCCCHHHHHHhCCcEEEeCCEEcCCcEEcHHHHHHHHHcC
Confidence                 24789988764 99999999999999999998899999887 6777765    3579999999999754

>cd02064 FAD_synthetase_N FAD synthetase, N-terminal domain of the bifunctional enzyme

Probab=99.89  E-value=1.2e-22  Score=179.35  Aligned_cols=134  Identities=22%  Similarity=0.314  Sum_probs=106.3

Q ss_pred             EEEecccCcCCHHHHHHHHHHHHcCCe-----EEEEEeCChhhh--hcCC-CCCCCHHHHHHHHHHccCccEEEEcCCCc
Q 021802           54 VYMDGCFDMMHYGHCNALRQARALGDQ-----LVVGVVSDAEII--ANKG-PPVTPLHERMIMVNAVKWVDEVISDAPYA  125 (307)
Q Consensus        54 V~~~G~FD~lH~GH~~lL~qAk~~gd~-----LiVgV~sD~~i~--~~Kg-~pi~s~eER~~ll~~~k~VD~Vv~~~py~  125 (307)
                      |+++|+||++|.||++++++|++++++     +++.+.+.+...  ..+. .++++.++|+++++++ +||++++ .||+
T Consensus         2 vv~iG~FDgvH~GH~~ll~~a~~~a~~~~~~~vvv~f~~~p~~~~~~~~~~~~l~~~e~R~~~l~~l-~vd~v~~-~~f~   79 (180)
T cd02064           2 VVAIGNFDGVHLGHQALIKTLKKIARERGLPSAVLTFDPHPREVFLPDKAPPRLTTLEEKLELLESL-GVDYLLV-LPFD   79 (180)
T ss_pred             EEEEecCCccCHHHHHHHHHHHHHHHHcCCCeEEEEECCCHHHHhCCCCCCCcCCCHHHHHHHHHHc-CCCEEEE-eCCC
Confidence            789999999999999999999999752     444444444322  2222 5899999999999999 6999999 7875


Q ss_pred             ------ccHHHHHHHHHhcCccEEEEcCCCCcCCCCCchHHHHHh-----CCEEEEcCCC----CCCCHHHHHHHHHhh
Q 021802          126 ------ITKDFMKKLFDEYNIDYIIHGDDPCVLPDGTDAYELAKK-----AGRYKQIKRT----EGVSSTDIVGRMLLC  189 (307)
Q Consensus       126 ------~t~dfle~ll~~l~~d~VV~GdD~~fg~~g~d~y~~lk~-----~g~v~vv~rt----~~VSST~Ir~rIl~~  189 (307)
                            ..++|+++++.+.+++++|+|+||+||+++.++.+.+++     +.++.++++.    +.||||.||+.|.+.
T Consensus        80 ~~~~~~s~~~Fi~~il~~~~~~~ivvG~Df~FG~~~~g~~~~L~~~~~~~g~~v~~v~~~~~~~~~iSST~IR~~i~~G  158 (180)
T cd02064          80 KEFASLSAEEFVEDLLVKLNAKHVVVGFDFRFGKGRSGDAELLKELGKKYGFEVTVVPPVTLDGERVSSTRIREALAEG  158 (180)
T ss_pred             HHHHcCCHHHHHHHHHhhcCCeEEEEccCCCCCCCCCCCHHHHHHhhhhcCcEEEEeCcEecCCcEEcHHHHHHHHHhC
Confidence                  246788887766699999999999999999877766654     3467777773    679999999999754

FAD synthetase_N. N-terminal domain of the bifunctional riboflavin biosynthesis protein riboflavin kinase/FAD synthetase. These enzymes have both ATP:riboflavin 5'-phosphotransferase and ATP:FMN-adenylyltransferase activities. The N-terminal domain is believed to play a role in the adenylylation reaction of FAD synthetases. The C-terminal domain is thought to have kinase activity. FAD synthetase is present among all kingdoms of life. However, the bifunctional enzyme is not found in mammals, which use separate enzymes for FMN and FAD formation.

>PRK11316 bifunctional heptose 7-phosphate kinase/heptose 1-phosphate adenyltransferase; Provisional

Probab=99.89  E-value=1.4e-22  Score=201.61  Aligned_cols=131  Identities=33%  Similarity=0.495  Sum_probs=112.8

Q ss_pred             CeEEEEecccCcCCHHHHHHHHHHHHcCCeEEEEEeCChhhhhcCC--CCCCCHHHHHHHHHHccCccEEEEcCCCcccH
Q 021802           51 PVRVYMDGCFDMMHYGHCNALRQARALGDQLVVGVVSDAEIIANKG--PPVTPLHERMIMVNAVKWVDEVISDAPYAITK  128 (307)
Q Consensus        51 ~~~V~~~G~FD~lH~GH~~lL~qAk~~gd~LiVgV~sD~~i~~~Kg--~pi~s~eER~~ll~~~k~VD~Vv~~~py~~t~  128 (307)
                      .++|++.|+||++|.||+++|++|++++++++|||++|+.+...|+  +|+++.+||.+++++|+|||++++. +...++
T Consensus       340 ~~iv~~~G~fD~~H~GH~~~l~~a~~~~~~l~v~v~~d~~~~~~k~~~~pi~~~~~R~~~~~~~~~vd~v~~~-~~~~~~  418 (473)
T PRK11316        340 EKIVMTNGCFDILHAGHVSYLANARKLGDRLIVAVNSDASVKRLKGEGRPVNPLEQRMAVLAALEAVDWVVPF-EEDTPQ  418 (473)
T ss_pred             CeEEEEecccccCCHHHHHHHHHHHHhCCeeEEEEeCchhHHHhCCCCCCCCCHHHHHHHHHhcCcCCEEEeC-CCCCHH
Confidence            4679999999999999999999999999999999999998876675  6899999999999999999999873 222345


Q ss_pred             HHHHHHHHhcCccEEEEcCCCCcCCCCCchHHHHHhCCEEEEcCCCCCCCHHHHHHHHH
Q 021802          129 DFMKKLFDEYNIDYIIHGDDPCVLPDGTDAYELAKKAGRYKQIKRTEGVSSTDIVGRML  187 (307)
Q Consensus       129 dfle~ll~~l~~d~VV~GdD~~fg~~g~d~y~~lk~~g~v~vv~rt~~VSST~Ir~rIl  187 (307)
                      +|+    ++++||+|++|+||.+... .+.+...+.+|+++++++++++|||+|++||+
T Consensus       419 ~~~----~~~~~d~vv~G~d~~~~~~-~~~~~~~~~~~~~~~~~~~~~~st~~i~~ri~  472 (473)
T PRK11316        419 RLI----AEILPDLLVKGGDYKPEEI-AGSKEVWANGGEVKVLNFEDGCSTTNIIKKIR  472 (473)
T ss_pred             HHH----HHhCCCEEEECCCCCCCcc-ccHHHHHHcCCEEEEEcCCCCcCHHHHHHHHh
Confidence            565    5678999999999987532 34566677789999999999999999999996

>PRK05627 bifunctional riboflavin kinase/FMN adenylyltransferase; Reviewed

Probab=99.89  E-value=2.6e-22  Score=191.17  Aligned_cols=135  Identities=25%  Similarity=0.331  Sum_probs=109.0

Q ss_pred             EEEEecccCcCCHHHHHHHHHHHHcCCeE---EEEEeCC--hh-hh-hcCC-CCCCCHHHHHHHHHHccCccEEEEcCCC
Q 021802           53 RVYMDGCFDMMHYGHCNALRQARALGDQL---VVGVVSD--AE-II-ANKG-PPVTPLHERMIMVNAVKWVDEVISDAPY  124 (307)
Q Consensus        53 ~V~~~G~FD~lH~GH~~lL~qAk~~gd~L---iVgV~sD--~~-i~-~~Kg-~pi~s~eER~~ll~~~k~VD~Vv~~~py  124 (307)
                      +|+++|+||++|.||+++|++|+++++++   .+.++.|  |. +. ..+. +++++.+||.++++++ +||.+++ .||
T Consensus        15 ~vv~iG~FDGvH~GHq~Ll~~a~~~a~~~~~~~~vitFd~~p~~~~~~~~~~~~l~t~eeR~~~l~~~-gVD~~~~-~~F   92 (305)
T PRK05627         15 CVLTIGNFDGVHRGHQALLARAREIARERGLPSVVMTFEPHPREVFAPDKAPARLTPLRDKAELLAEL-GVDYVLV-LPF   92 (305)
T ss_pred             EEEEEeeCCcCCHHHHHHHHHHHHHHHhcCCCEEEEEecCCHHHHcCCCCCCcCCCCHHHHHHHHHHc-CCCEEEE-ecC
Confidence            79999999999999999999999998653   2234444  32 21 1223 6899999999999999 6999999 888


Q ss_pred             c------ccHHHHHH-HHHhcCccEEEEcCCCCcCCCCCchHHHHHhC-----CEEEEcCC----CCCCCHHHHHHHHHh
Q 021802          125 A------ITKDFMKK-LFDEYNIDYIIHGDDPCVLPDGTDAYELAKKA-----GRYKQIKR----TEGVSSTDIVGRMLL  188 (307)
Q Consensus       125 ~------~t~dfle~-ll~~l~~d~VV~GdD~~fg~~g~d~y~~lk~~-----g~v~vv~r----t~~VSST~Ir~rIl~  188 (307)
                      +      ..++|+++ +++++++++||+|+||+||+++.++++.+++.     .++.+++.    .+.||||.||+.|..
T Consensus        93 ~~~~~~ls~e~Fi~~~l~~~l~~~~iVvG~Df~FG~~~~G~~~~L~~~~~~~g~~v~~v~~~~~~~~~ISST~IR~~I~~  172 (305)
T PRK05627         93 DEEFAKLSAEEFIEDLLVKGLNAKHVVVGFDFRFGKKRAGDFELLKEAGKEFGFEVTIVPEVKEDGERVSSTAIRQALAE  172 (305)
T ss_pred             CHHHhcCCHHHHHHHHHHhccCCCEEEECCCCCCCCCCCCCHHHHHHHHHHcCcEEEEeccEecCCCcCchHHHHHHHHc
Confidence            5      24789987 44569999999999999999999888888764     46777766    368999999999975


Q ss_pred             h
Q 021802          189 C  189 (307)
Q Consensus       189 ~  189 (307)
                      +
T Consensus       173 G  173 (305)
T PRK05627        173 G  173 (305)
T ss_pred             C
Confidence            4

>KOG2803 consensus Choline phosphate cytidylyltransferase/Predicted CDP-ethanolamine synthase [Lipid transport and metabolism]

Probab=99.87  E-value=4.4e-22  Score=186.78  Aligned_cols=144  Identities=36%  Similarity=0.633  Sum_probs=124.4

Q ss_pred             HHhHhhhcCCCCeEEEEecccCcCCHHHHHHHHHHHHcCCeEEEEEeCChhhhhcCC--CCCCCHHHHHHHHHHccCccE
Q 021802           40 RWLQWTRKKKKPVRVYMDGCFDMMHYGHCNALRQARALGDQLVVGVVSDAEIIANKG--PPVTPLHERMIMVNAVKWVDE  117 (307)
Q Consensus        40 ~~~~~~~~~~~~~~V~~~G~FD~lH~GH~~lL~qAk~~gd~LiVgV~sD~~i~~~Kg--~pi~s~eER~~ll~~~k~VD~  117 (307)
                      ++..+..+.+..+.||++|.||+||.||+..|+.|++++|+|+||+++|+.++..|+  .|||+..||...+.+||+||+
T Consensus       187 ~~~~G~~p~p~~kvVYvdGaFDLFH~GHl~~Le~ak~lgdyLIvGI~~D~~vneykgs~~PiMnl~ER~LsvlackyVde  266 (358)
T KOG2803|consen  187 QFSNGREPKPTDKVVYVDGAFDLFHAGHLDFLEKAKRLGDYLIVGIHTDQTVNEYKGSNYPIMNLHERVLSVLACKYVDE  266 (358)
T ss_pred             EeecCCCCCCCCcEEEEcCchhhhccchHHHHHHHHhccCceEEEeecCcchhhhccCCCccchHHHHHHHHhhhcccce
Confidence            345555666667789999999999999999999999999999999999999988888  599999999999999999999


Q ss_pred             EEEcCCCcccHHHHHHHHHhcCccEEEEcCCCCcCCCCCchHHHHHhCCEEEEcCCCCCCCHHHHHHHHHh
Q 021802          118 VISDAPYAITKDFMKKLFDEYNIDYIIHGDDPCVLPDGTDAYELAKKAGRYKQIKRTEGVSSTDIVGRMLL  188 (307)
Q Consensus       118 Vv~~~py~~t~dfle~ll~~l~~d~VV~GdD~~fg~~g~d~y~~lk~~g~v~vv~rt~~VSST~Ir~rIl~  188 (307)
                      |++++||..+.+|+    +.++++.|++|.-+.+ .+..+.|...+..+.+..+......++..|++||..
T Consensus       267 VvvGaP~~v~s~~i----~~~~~~~v~~g~~~~~-~~~~~py~~~k~~~i~~~~~~~~dltte~Iv~RIis  332 (358)
T KOG2803|consen  267 VVVGAPYEVTSEFI----KLFNIDKVAHGTIPDF-RDPSDPYADPKRRGIFEEADSGSDLTTELIVERIIS  332 (358)
T ss_pred             EEEcCchhccHHHH----HhcCceEEEEeccccc-cCccCccccchhhcchhhcCCcccccHHHHHHHHHH
Confidence            99999999888887    4689999999982222 234567888888888888777767999999999974

>PF06574 FAD_syn: FAD synthetase; InterPro: IPR015864 Riboflavin is converted into catalytically active cofactors (FAD and FMN) by the actions of riboflavin kinase (2

Probab=99.85  E-value=1.5e-21  Score=169.58  Aligned_cols=130  Identities=26%  Similarity=0.403  Sum_probs=94.0

Q ss_pred             CCeEEEEecccCcCCHHHHHHHHHHHHcCC-----eEEEEEeCChhhhhc--CC-CCCCCHHHHHHHHHHccCccEEEEc
Q 021802           50 KPVRVYMDGCFDMMHYGHCNALRQARALGD-----QLVVGVVSDAEIIAN--KG-PPVTPLHERMIMVNAVKWVDEVISD  121 (307)
Q Consensus        50 ~~~~V~~~G~FD~lH~GH~~lL~qAk~~gd-----~LiVgV~sD~~i~~~--Kg-~pi~s~eER~~ll~~~k~VD~Vv~~  121 (307)
                      ....++++|.|||+|.||+.+|++|++.+.     .+++.+.++|.....  +. ..++|.+||.++++++ +||+++. 
T Consensus         4 ~~~~~v~iG~FDGvH~GHq~Li~~~~~~a~~~~~~~~v~tF~~~P~~~~~~~~~~~~l~s~~ek~~~l~~~-Gvd~~~~-   81 (157)
T PF06574_consen    4 NKKSVVAIGNFDGVHLGHQKLIKKAVEIAKEKGLKSVVLTFDPHPKEVLNPDKPPKLLTSLEEKLELLESL-GVDYVIV-   81 (157)
T ss_dssp             -S-EEEEES--TT--HHHHHHHHHHHHHHHHCT-EEEEEEESS-CHHHHSCTCCGGBSS-HHHHHHHHHHT-TESEEEE-
T ss_pred             CCCcEEEEeCCCCccHHHHHHHHHHhhhhhhcccceEEEEcccCHHHHhcCCCcccCCCCHHHHHHHHHHc-CCCEEEE-
Confidence            455799999999999999999999999872     245556556643222  22 5699999999999998 9999999 


Q ss_pred             CCCcc------cHHHHHHHHH-hcCccEEEEcCCCCcCCCCCchHHHHHhCC-----EEEEcCCC----CCCCHHH
Q 021802          122 APYAI------TKDFMKKLFD-EYNIDYIIHGDDPCVLPDGTDAYELAKKAG-----RYKQIKRT----EGVSSTD  181 (307)
Q Consensus       122 ~py~~------t~dfle~ll~-~l~~d~VV~GdD~~fg~~g~d~y~~lk~~g-----~v~vv~rt----~~VSST~  181 (307)
                      .||+.      +++|++.++. ++++..||+|+||+||+++.++.+.+++.+     .+.+++..    ..||||+
T Consensus        82 ~~F~~~~~~ls~~~Fi~~iL~~~l~~~~ivvG~DfrFG~~~~G~~~~L~~~~~~~g~~v~~v~~~~~~~~~ISStr  157 (157)
T PF06574_consen   82 IPFTEEFANLSPEDFIEKILKEKLNVKHIVVGEDFRFGKNRSGDVELLKELGKEYGFEVEVVPPVKIDGEKISSTR  157 (157)
T ss_dssp             E-CCCHHCCS-HHHHHHHHCCCHCTEEEEEEETT-EESGGGEEEHHHHHHCTTTT-SEEEEE---EETTEE-SHHH
T ss_pred             ecchHHHHcCCHHHHHHHHHHhcCCccEEEEccCccCCCCCCCCHHHHHHhcccCceEEEEECCEEcCCcEeCCCC
Confidence            88862      4799998666 899999999999999999998888888764     56777763    4699995

7.1.26 from EC), which converts it into FMN, and FAD synthetase (2.7.7.2 from EC), which adenylates FMN to FAD. Eukaryotes usually have two separate enzymes, while most prokaryotes have a single bifunctional protein that can carry out both catalyses, although exceptions occur in both cases. While eukaryotic monofunctional riboflavin kinase is orthologous to the bifunctional prokaryotic enzyme [], the monofunctional FAD synthetase differs from its prokaryotic counterpart, and is instead related to the PAPS-reductase family []. The bacterial FAD synthetase that is part of the bifunctional enzyme has remote similarity to nucleotidyl transferases and, hence, it may be involved in the adenylylation reaction of FAD synthetases []. This entry represents prokaryotic-type FAD synthetase, which occurs primarily as part of a bifunctional enzyme.; GO: 0003919 FMN adenylyltransferase activity, 0009231 riboflavin biosynthetic process; PDB: 2X0K_B 3OP1_B 1T6Z_A 2I1L_A 1T6Y_B 1T6X_B 1S4M_A 1MRZ_A.

>TIGR00083 ribF riboflavin kinase/FMN adenylyltransferase

Probab=99.84  E-value=2.1e-20  Score=176.76  Aligned_cols=134  Identities=19%  Similarity=0.268  Sum_probs=106.4

Q ss_pred             EEEecccCcCCHHHHHHHHHHHHcCC-----eEEEEEeCChhhhhc--CCCCCCCHHHHHHHHHHccCccEEEEcCCCcc
Q 021802           54 VYMDGCFDMMHYGHCNALRQARALGD-----QLVVGVVSDAEIIAN--KGPPVTPLHERMIMVNAVKWVDEVISDAPYAI  126 (307)
Q Consensus        54 V~~~G~FD~lH~GH~~lL~qAk~~gd-----~LiVgV~sD~~i~~~--Kg~pi~s~eER~~ll~~~k~VD~Vv~~~py~~  126 (307)
                      ++++|+|||+|.||+++|++|++.++     ..++.+.++|.....  +.+++++.+||.++++++ +||.+++ .||+-
T Consensus         1 ~vaiG~FDGvH~GHq~Li~~~~~~a~~~~~~~~V~tF~phP~~~~~~~~~~~l~~~~~k~~~l~~~-Gvd~~~~-~~F~~   78 (288)
T TIGR00083         1 SLAIGYFDGLHLGHQALLQELKQIAEEKGLPPAVLLFEPHPSEQFNWLTAPALTPLEDKARQLQIK-GVEQLLV-VVFDE   78 (288)
T ss_pred             CEEEEeCCccCHHHHHHHHHHHHHHHHhCCCEEEEEeCCChHHHhCccCCCCCCCHHHHHHHHHHc-CCCEEEE-eCCCH
Confidence            57999999999999999999998753     355566666543222  223499999999999998 9999999 89852


Q ss_pred             ------cHHHHHHHH-HhcCccEEEEcCCCCcCCCCCchHHHHHhCC-----EEEEcCCC---CCCCHHHHHHHHHhh
Q 021802          127 ------TKDFMKKLF-DEYNIDYIIHGDDPCVLPDGTDAYELAKKAG-----RYKQIKRT---EGVSSTDIVGRMLLC  189 (307)
Q Consensus       127 ------t~dfle~ll-~~l~~d~VV~GdD~~fg~~g~d~y~~lk~~g-----~v~vv~rt---~~VSST~Ir~rIl~~  189 (307)
                            +++|+++++ ++++++.||+|+||+||+++.++++.+++.+     .+.+++..   +.||||.||+.|...
T Consensus        79 ~~a~ls~e~Fi~~~l~~~l~~~~ivvG~Df~FG~~~~G~~~~L~~~~~~~g~~v~~~~~~~~~~~ISST~IR~~l~~G  156 (288)
T TIGR00083        79 EFANLSALQFIDQLIVKHLHVKFLVVGDDFRFGHDRQGDFLLLQLFGNTTIFCVIVKQLFCQDIRISSSAIRQALKNG  156 (288)
T ss_pred             HHHcCCHHHHHHHHHHhccCCcEEEECCCccCCCCCCCCHHHHHHhccccCcEEEEeccccCCCeECHHHHHHHHHcC
Confidence                  368998866 4599999999999999999998888888754     33444442   579999999999854

multifunctional enzyme: riboflavin kinase (EC 2.7.1.26) (flavokinase) / FMN adenylyltransferase (EC 2.7.7.2) (FAD pyrophosphorylase) (FAD synthetase).

>COG2870 RfaE ADP-heptose synthase, bifunctional sugar kinase/adenylyltransferase [Cell envelope biogenesis, outer membrane]

Probab=99.81  E-value=8.7e-20  Score=176.81  Aligned_cols=130  Identities=34%  Similarity=0.510  Sum_probs=113.5

Q ss_pred             EEEEecccCcCCHHHHHHHHHHHHcCCeEEEEEeCChhhhhcCC--CCCCCHHHHHHHHHHccCccEEEEcCCCcccHHH
Q 021802           53 RVYMDGCFDMMHYGHCNALRQARALGDQLVVGVVSDAEIIANKG--PPVTPLHERMIMVNAVKWVDEVISDAPYAITKDF  130 (307)
Q Consensus        53 ~V~~~G~FD~lH~GH~~lL~qAk~~gd~LiVgV~sD~~i~~~Kg--~pi~s~eER~~ll~~~k~VD~Vv~~~py~~t~df  130 (307)
                      .|++.||||.+|.||..+|.|||++||.||||+++|.++.+.||  +|+.+++.|+..+.++..||.|+.     |++|.
T Consensus       334 vvfTNGcFDIlH~GHvsyL~~Ar~lgd~Livg~NsDaSvkrLKG~~RPin~~~~Ra~vLa~L~~VD~vV~-----F~edT  408 (467)
T COG2870         334 VVFTNGCFDILHAGHVTYLAQARALGDRLIVGVNSDASVKRLKGESRPINSEEDRAAVLAALESVDLVVI-----FDEDT  408 (467)
T ss_pred             EEEecchhhhccccHHHHHHHHHhhCCeEEEEeccchhhhhhcCCCCCCCcHHHHHHHHhhcccceEEEE-----ecCCC
Confidence            79999999999999999999999999999999999999998898  899999999999999999999999     55666


Q ss_pred             HHHHHHhcCccEEEEcCCCCcCCCCCchHHHHHhCCEEEEcCCCCCCCHHHHHHHHHh
Q 021802          131 MKKLFDEYNIDYIIHGDDPCVLPDGTDAYELAKKAGRYKQIKRTEGVSSTDIVGRMLL  188 (307)
Q Consensus       131 le~ll~~l~~d~VV~GdD~~fg~~g~d~y~~lk~~g~v~vv~rt~~VSST~Ir~rIl~  188 (307)
                      -++|++..+||.+|.|-||....- .+.-.....+|++..++-.++.|||.|+++|..
T Consensus       409 P~~LI~~~~PdilVKGgDy~~~~i-~g~~~v~~~GG~v~~i~f~~g~STt~ii~ki~~  465 (467)
T COG2870         409 PEELIEAVKPDILVKGGDYKIEKI-VGADIVEAYGGEVLLIPFEEGKSTTKIIEKIRA  465 (467)
T ss_pred             HHHHHHHhCcceEEccCCCChhhc-cchhhhhhcCCeEEEEecccCCcHHHHHHHHhc
Confidence            667778899999999999975311 122233346789999999999999999999974

>COG0196 RibF FAD synthase [Coenzyme metabolism]

Probab=99.81  E-value=1.4e-19  Score=172.02  Aligned_cols=137  Identities=22%  Similarity=0.294  Sum_probs=109.1

Q ss_pred             CeEEEEecccCcCCHHHHHHHHHHHHcCCe-----EEEEEeCChhhhhcC-C--CCCCCHHHHHHHHHHccCccEEEEcC
Q 021802           51 PVRVYMDGCFDMMHYGHCNALRQARALGDQ-----LVVGVVSDAEIIANK-G--PPVTPLHERMIMVNAVKWVDEVISDA  122 (307)
Q Consensus        51 ~~~V~~~G~FD~lH~GH~~lL~qAk~~gd~-----LiVgV~sD~~i~~~K-g--~pi~s~eER~~ll~~~k~VD~Vv~~~  122 (307)
                      ...++++|+|||+|+||+++|++|++.+.+     +++.+.+.|.-...+ .  ..+++.++|.+.++.+ +||.++. .
T Consensus        15 ~~~~l~IG~FDGvHlGHq~ll~~a~~~a~~~~~~~~VitF~p~P~~~~~~~~~~~~Lt~~~~k~~~l~~~-gvd~~~v-~   92 (304)
T COG0196          15 RGCVLTIGNFDGVHLGHQKLLAQALEAAEKRGLPVVVITFEPHPRELLKPDKPPTRLTPLREKIRLLAGY-GVDALVV-L   92 (304)
T ss_pred             CCcEEEEEcCCccchhHHHHHHHHHHHHHHhCCceEEEEecCCCHHHcCCCCCccccCCHHHHHHHHHhc-CCcEEEE-E
Confidence            456999999999999999999999977632     344454444322222 1  2489999999999999 9999999 8


Q ss_pred             CCcc------cHHHHHHHHHhcCccEEEEcCCCCcCCCCCchHHHHHhCC----EEEEcCCC----CCCCHHHHHHHHHh
Q 021802          123 PYAI------TKDFMKKLFDEYNIDYIIHGDDPCVLPDGTDAYELAKKAG----RYKQIKRT----EGVSSTDIVGRMLL  188 (307)
Q Consensus       123 py~~------t~dfle~ll~~l~~d~VV~GdD~~fg~~g~d~y~~lk~~g----~v~vv~rt----~~VSST~Ir~rIl~  188 (307)
                      +|+.      .++|++.+++.+++++||+|+||+||+++.++.++++..+    .+.+++..    .+||||.||+.+..
T Consensus        93 ~F~~~fa~ls~~~Fv~~lv~~l~~k~ivvG~DF~FGk~~~g~~~~L~~~~~~gf~v~~v~~~~~~~~~iSSt~IR~~L~~  172 (304)
T COG0196          93 DFDLEFANLSAEEFVELLVEKLNVKHIVVGFDFRFGKGRQGNAELLRELGQKGFEVTIVPKINEEGIRISSTAIRQALRE  172 (304)
T ss_pred             eCCHhHhhCCHHHHHHHHHhccCCcEEEEecccccCCCCCCCHHHHHHhccCCceEEEeccEecCCcEEchHHHHHHHhc
Confidence            8862      4789998888999999999999999999998888888765    46666663    35999999999874


Q ss_pred             h
Q 021802          189 C  189 (307)
Q Consensus       189 ~  189 (307)
                      .
T Consensus       173 g  173 (304)
T COG0196         173 G  173 (304)
T ss_pred             C
Confidence            3

>cd02039 cytidylyltransferase_like Cytidylyltransferase-like domain

Probab=99.78  E-value=1.3e-18  Score=144.57  Aligned_cols=130  Identities=19%  Similarity=0.241  Sum_probs=98.0

Q ss_pred             EEEecccCcCCHHHHHHHHHHHHcC-CeEEEEEeCChhhhhcCCCCCCCHHHHHHHHHHccC-ccEEEEcCCCc-----c
Q 021802           54 VYMDGCFDMMHYGHCNALRQARALG-DQLVVGVVSDAEIIANKGPPVTPLHERMIMVNAVKW-VDEVISDAPYA-----I  126 (307)
Q Consensus        54 V~~~G~FD~lH~GH~~lL~qAk~~g-d~LiVgV~sD~~i~~~Kg~pi~s~eER~~ll~~~k~-VD~Vv~~~py~-----~  126 (307)
                      +++.|+||++|.||+.++++|++.+ +.++|.+.+++.... +..++++.++|+++++++.. +|.++. .++.     .
T Consensus         2 ~~~~G~Fdp~H~GH~~ll~~a~~~~~~~~~v~~~~~~~~~~-~~~~~~~~~~R~~~l~~~~~~~~~v~~-~~~~~~~~~~   79 (143)
T cd02039           2 GIIIGRFEPFHLGHLKLIKEALEEALDEVIIIIVSNPPKKK-RNKDPFSLHERVEMLKEILKDRLKVVP-VDFPEVKILL   79 (143)
T ss_pred             eEEeeccCCcCHHHHHHHHHHHHHcCCceEEEEcCCChhhc-ccccCCCHHHHHHHHHHhccCCcEEEE-EecChhhccC
Confidence            7899999999999999999999999 999999988764322 12588999999999999843 788866 4432     1


Q ss_pred             cHHHHHHHHHhcCccEEEEcCCCCcCCCCCch--HHHHHhCCEEEEcCCC---CCCCHHHHHHH
Q 021802          127 TKDFMKKLFDEYNIDYIIHGDDPCVLPDGTDA--YELAKKAGRYKQIKRT---EGVSSTDIVGR  185 (307)
Q Consensus       127 t~dfle~ll~~l~~d~VV~GdD~~fg~~g~d~--y~~lk~~g~v~vv~rt---~~VSST~Ir~r  185 (307)
                      +.+|+..++..++++++++|.|+.++.+..+.  ...+.....+.++++.   ..||||.||+|
T Consensus        80 ~~~~~~~~~~~~~~~~~v~G~d~~~~~~~~~~~~~~~~~~~~~vv~~~~~~~~~~iSSt~IR~~  143 (143)
T cd02039          80 AVVFILKILLKVGPDKVVVGEDFAFGKNASYNKDLKELFLDIEIVEVPRVRDGKKISSTLIREL  143 (143)
T ss_pred             HHHHHHHHHHHcCCcEEEECCccccCCchhhhHHHHHhCCceEEEeeEecCCCcEEehHHhhcC
Confidence            23466666677999999999999988765432  1122223456667775   57999999974

Cytidylyltransferase-like domain. Many of these proteins are known to use CTP or ATP and release pyrophosphate. Protein families that contain at least one copy of this domain include citrate lyase ligase, pantoate-beta-alanine ligase, glycerol-3-phosphate cytidyltransferase, ADP-heptose synthase, phosphocholine cytidylyltransferase, lipopolysaccharide core biosynthesis protein KdtB, the bifunctional protein NadR, and a number whose function is unknown.

>PRK00777 phosphopantetheine adenylyltransferase; Provisional

Probab=99.72  E-value=8.9e-18  Score=145.43  Aligned_cols=132  Identities=26%  Similarity=0.336  Sum_probs=92.9

Q ss_pred             eEEEEecccCcCCHHHHHHHHHHHHcCCeEEEEEeCChhhhhcCCCCCCCHHHHHHHHHHccCccEEEEcCCCcc---cH
Q 021802           52 VRVYMDGCFDMMHYGHCNALRQARALGDQLVVGVVSDAEIIANKGPPVTPLHERMIMVNAVKWVDEVISDAPYAI---TK  128 (307)
Q Consensus        52 ~~V~~~G~FD~lH~GH~~lL~qAk~~gd~LiVgV~sD~~i~~~Kg~pi~s~eER~~ll~~~k~VD~Vv~~~py~~---t~  128 (307)
                      .+|++.|+||++|.||..+|++|++++|+|+|||++|+.+...|..|+++.++|+++++.  +++.+.+...+.+   +.
T Consensus         2 ~~v~~gGtFDplH~GH~~ll~~A~~~~d~livgi~~d~~~~~~K~~~i~~~e~R~~~v~~--~~~~~~~~~~~~i~~i~d   79 (153)
T PRK00777          2 MKVAVGGTFDPLHDGHRALLRKAFELGKRVTIGLTSDEFAKSYKKHKVRPYEVRLKNLKK--FLKAVEYDREYEIVKIDD   79 (153)
T ss_pred             cEEEEecccCCCCHHHHHHHHHHHHcCCEEEEEEcCCccccccCCCCCCCHHHHHHHHHH--HHHhcCCCCcEEEEeccc
Confidence            379999999999999999999999999999999999987766666799999999999996  4544433222221   11


Q ss_pred             HHHHHHHHhcCccEEEEcCCCCcCCCCCchHHHHHhCC----EEEEcCC-----CCCCCHHHHHHHHHhh
Q 021802          129 DFMKKLFDEYNIDYIIHGDDPCVLPDGTDAYELAKKAG----RYKQIKR-----TEGVSSTDIVGRMLLC  189 (307)
Q Consensus       129 dfle~ll~~l~~d~VV~GdD~~fg~~g~d~y~~lk~~g----~v~vv~r-----t~~VSST~Ir~rIl~~  189 (307)
                      .|....  ..++|++|+|+|...+.  .-.-+..++.|    ++.+++.     ++.+|||.||+++...
T Consensus        80 ~~gp~~--~~~~d~ivvs~et~~~~--~~in~~r~~~gl~~l~i~~v~~~~~~~~~~~SSt~Ir~~~~~~  145 (153)
T PRK00777         80 PYGPAL--EDDFDAIVVSPETYPGA--LKINEIRRERGLKPLEIVVIDFVLAEDGKPISSTRIRRGEIDE  145 (153)
T ss_pred             cCCCcc--ccCCCEEEEChhhhhhH--HHHHHHHHHCCCCceEEEEEeeeecCCCCeeeHHHHHHhhhcc
Confidence            111111  23699999999965431  11112333333    4555655     5779999999988643

>smart00764 Citrate_ly_lig Citrate lyase ligase C-terminal domain

Probab=99.64  E-value=3.5e-15  Score=132.66  Aligned_cols=124  Identities=19%  Similarity=0.166  Sum_probs=94.8

Q ss_pred             cccCcCCHHHHHHHHHHHHcCCeEEEEEeCChhhhhcCCCCCCCHHHHHHHHHHc-cCccEEEEc-------CC-----C
Q 021802           58 GCFDMMHYGHCNALRQARALGDQLVVGVVSDAEIIANKGPPVTPLHERMIMVNAV-KWVDEVISD-------AP-----Y  124 (307)
Q Consensus        58 G~FD~lH~GH~~lL~qAk~~gd~LiVgV~sD~~i~~~Kg~pi~s~eER~~ll~~~-k~VD~Vv~~-------~p-----y  124 (307)
                      =.|||+|.||..++++|.+.++.+.|.+.+.      + .+.++.++|++|++.. ++.+.+..-       .|     |
T Consensus         6 ~~~DPiH~GHl~i~~~a~~~~d~~~V~v~p~------~-~~~~s~e~R~~Mi~~a~~~~~~v~v~~~~~~~v~~~~~~~~   78 (182)
T smart00764        6 MNANPFTLGHRYLVEQAAAECDWVHLFVVSE------D-ASLFSFDERFALVKKGTKDLDNVTVHSGSDYIISRATFPSY   78 (182)
T ss_pred             ECCCCCCHHHHHHHHHHHHHCCceEEEEEeC------C-CCCCCHHHHHHHHHHHhccCCCEEEEecCCceeccccChhh
Confidence            3699999999999999999998887777654      1 3567999999999883 444433220       11     1


Q ss_pred             c--------------ccHHHHHHHHHhcCccEEEEcCCCCcCCCCCchHHHHHhC----CEEEEcCC----CCCCCHHHH
Q 021802          125 A--------------ITKDFMKKLFDEYNIDYIIHGDDPCVLPDGTDAYELAKKA----GRYKQIKR----TEGVSSTDI  182 (307)
Q Consensus       125 ~--------------~t~dfle~ll~~l~~d~VV~GdD~~fg~~g~d~y~~lk~~----g~v~vv~r----t~~VSST~I  182 (307)
                      -              ..++|++.+.++++++.|++|+||+||+++.++.+.+++.    .++.+++|    .+.+|||.|
T Consensus        79 ~~~~~~~~~~~~a~lsa~~Fi~~L~~~l~~~~ivvG~df~FG~~~~G~~~~L~~~~~~g~~v~~I~r~~~~g~~iSST~I  158 (182)
T smart00764       79 FLKEQDVVIKSQTTLDLRIFRKYIAPALGITHRYVGEEPFSPVTAIYNQTMKQTLLSPAIEVVEIERKKANGQPISASTV  158 (182)
T ss_pred             hcCchhHHHHHHhcCCHHHHHHHHHHHcCceEEEEcCCCCCCCCCccCHHHHHHHhhCCCEEEEEecccCCCcEECHHHH
Confidence            0              0258887666779999999999999999999888887764    45677777    356999999


Q ss_pred             HHHHHh
Q 021802          183 VGRMLL  188 (307)
Q Consensus       183 r~rIl~  188 (307)
                      |+.|.+
T Consensus       159 R~~L~~  164 (182)
T smart00764      159 RKLLKE  164 (182)
T ss_pred             HHHHHc
Confidence            999954

Proteins of this family contain the C-terminal domain of citrate lyase ligase EC:6.2.1.22.

>cd02169 Citrate_lyase_ligase Citrate lyase ligase

Probab=99.63  E-value=8e-15  Score=139.46  Aligned_cols=131  Identities=18%  Similarity=0.168  Sum_probs=98.4

Q ss_pred             CeEEEEecccCcCCHHHHHHHHHHHHcCCeEEEEEeCChhhhhcCCCCCCCHHHHHHHHHH-ccCccEEEE---------
Q 021802           51 PVRVYMDGCFDMMHYGHCNALRQARALGDQLVVGVVSDAEIIANKGPPVTPLHERMIMVNA-VKWVDEVIS---------  120 (307)
Q Consensus        51 ~~~V~~~G~FD~lH~GH~~lL~qAk~~gd~LiVgV~sD~~i~~~Kg~pi~s~eER~~ll~~-~k~VD~Vv~---------  120 (307)
                      .+.+-+.|+|||+|.||..++++|.+.++.++|.+-+.      + .+.++.++|++|++. ++..+.+.+         
T Consensus       114 ~~~~~~~~~FDPiH~GHl~ii~~a~~~~d~~~V~i~~~------~-~~~~~~e~R~~ml~~ai~~~~~v~v~~~~~l~v~  186 (297)
T cd02169         114 KKIAAIVMNANPFTLGHRYLVEKAAAENDWVHLFVVSE------D-KSLFSFADRFKLVKKGTKHLKNVTVHSGGDYIIS  186 (297)
T ss_pred             CceEEEEecCCCCchHHHHHHHHHHhhCCeEEEEEEcC------C-CCCCCHHHHHHHHHHHhCCCCCEEEEecCCeeec
Confidence            56789999999999999999999999999887777553      2 467899999999988 333333322         


Q ss_pred             cCCC----------------c-ccHHHHHHHH-HhcCccEEEEcCCCCcCCCCCchHHHHHhC----CEEEEcCC----C
Q 021802          121 DAPY----------------A-ITKDFMKKLF-DEYNIDYIIHGDDPCVLPDGTDAYELAKKA----GRYKQIKR----T  174 (307)
Q Consensus       121 ~~py----------------~-~t~dfle~ll-~~l~~d~VV~GdD~~fg~~g~d~y~~lk~~----g~v~vv~r----t  174 (307)
                      .+.|                . .+++|++ ++ +++++..||+|+||+||+++.++..+++.+    ..+.++++    .
T Consensus       187 ~~~~~~~~~~~~~~~~~~~a~lsa~~Fi~-iL~~~l~~~~ivvG~Df~FG~~r~G~~~l~~~~~~~gf~v~~v~~~~~~g  265 (297)
T cd02169         187 SATFPSYFIKEQDVVIKAQTALDARIFRK-YIAPALNITKRYVGEEPFSRVTAIYNQTMQEELLSPAIEVIEIERKKYDG  265 (297)
T ss_pred             cccChhhhcCChhHHHHHHhcCCHHHHHH-HHHHHcCCcEEEEcCCCCCCCcchhHHHHHHhcccCCCEEEEecccccCC
Confidence            1111                0 0258988 55 569999999999999999998775555542    34666665    2


Q ss_pred             CCCCHHHHHHHHHhh
Q 021802          175 EGVSSTDIVGRMLLC  189 (307)
Q Consensus       175 ~~VSST~Ir~rIl~~  189 (307)
                      +.||||.||+.|.++
T Consensus       266 ~~ISST~IR~~l~~G  280 (297)
T cd02169         266 QPISASTVRQLLKEG  280 (297)
T ss_pred             cEEcHHHHHHHHHcC
Confidence            579999999999754

Citrate lyase ligase, also known as [Citrate (pro-3S)-lyase] ligase, is responsible for acetylation of the (2-(5''-phosphoribosyl)-3'-dephosphocoenzyme-A) prosthetic group of the gamma subunit of citrate lyase, converting the inactive thiol form of this enzyme to the active form. The acetylation of 1 molecule of deacetyl-citrate lyase to enzymatically active citrate lyase requires 6 molecules of ATP. The Adenylylyltranferase activity of the enzyme involves the formation of AMP and and pyrophosphate in the acetylation reaction.

>TIGR01527 arch_NMN_Atrans nicotinamide-nucleotide adenylyltransferase

Probab=99.62  E-value=4.6e-15  Score=130.09  Aligned_cols=126  Identities=23%  Similarity=0.250  Sum_probs=85.3

Q ss_pred             EEEEecccCcCCHHHHHHHHHHHHcCCeEEEEEeCChhhhhcCCCCCCCHHHHHHHHH-HccCcc-EEEEcCCCc---cc
Q 021802           53 RVYMDGCFDMMHYGHCNALRQARALGDQLVVGVVSDAEIIANKGPPVTPLHERMIMVN-AVKWVD-EVISDAPYA---IT  127 (307)
Q Consensus        53 ~V~~~G~FD~lH~GH~~lL~qAk~~gd~LiVgV~sD~~i~~~Kg~pi~s~eER~~ll~-~~k~VD-~Vv~~~py~---~t  127 (307)
                      |+++.|.||++|.||++++++|++.+|+|+|+|.+++.  ..|..+.++.+||++|++ +++.++ ..+...|..   ..
T Consensus         1 rgl~~G~FdP~H~GHl~ii~~a~~~~D~lii~i~s~~~--~~k~~~p~~~~eR~~mi~~al~~~~~~~~~~vP~~d~~~~   78 (165)
T TIGR01527         1 RGFYIGRFQPFHLGHLEVIKKIAEEVDELIIGIGSAQE--SHTLENPFTAGERILMITQSLKEVGDLTYYIIPIEDIERN   78 (165)
T ss_pred             CeEEEeccCCCCHHHHHHHHHHHHHCCEEEEEEcCCCC--CCCCCCCCCHHHHHHHHHHHHhcCCCceEEEEecCCccHH
Confidence            47899999999999999999999999999999888664  234445567799999994 467763 312113321   11


Q ss_pred             HHHHHHHHHh-cCccEEEEcCCCCcCCCCCchHHHHHhC-CEEEEcC---CCCCCCHHHHHHHHHhh
Q 021802          128 KDFMKKLFDE-YNIDYIIHGDDPCVLPDGTDAYELAKKA-GRYKQIK---RTEGVSSTDIVGRMLLC  189 (307)
Q Consensus       128 ~dfle~ll~~-l~~d~VV~GdD~~fg~~g~d~y~~lk~~-g~v~vv~---rt~~VSST~Ir~rIl~~  189 (307)
                      ..+...+... .++|+|+.|+...        .+++++. .++...+   |+ ++|||+||++|...
T Consensus        79 ~~w~~~v~~~~p~~D~vf~~~~~~--------~~~f~e~g~~v~~~p~~~r~-~~S~T~IR~~i~~~  136 (165)
T TIGR01527        79 SIWVSYVESMTPPFDVVYSNNPLV--------RRLFKEAGYEVKRPPMFNRK-EYSGTEIRRRMLNG  136 (165)
T ss_pred             HHHHHHHHHhCCCCCEEEECCHHH--------HHHHHHcCCEEEECCCcCCC-cccHHHHHHHHHcC
Confidence            2222211111 2789999994322        3445554 4666666   55 89999999999753

In some archaeal species, a lower-scoring paralog, uncharacterized with respect to activity, is also present. These score between trusted and noise cutoffs.

>PRK00168 coaD phosphopantetheine adenylyltransferase; Provisional

Probab=99.61  E-value=1.7e-14  Score=125.30  Aligned_cols=126  Identities=21%  Similarity=0.291  Sum_probs=89.4

Q ss_pred             eEEEEecccCcCCHHHHHHHHHHHHcCCeEEEEEeCChhhhhcCCCCCCCHHHHHHHHHH-ccCccEEEEcCCCc-ccHH
Q 021802           52 VRVYMDGCFDMMHYGHCNALRQARALGDQLVVGVVSDAEIIANKGPPVTPLHERMIMVNA-VKWVDEVISDAPYA-ITKD  129 (307)
Q Consensus        52 ~~V~~~G~FD~lH~GH~~lL~qAk~~gd~LiVgV~sD~~i~~~Kg~pi~s~eER~~ll~~-~k~VD~Vv~~~py~-~t~d  129 (307)
                      +++++.|+||++|.||+.++++|++.+|+|++++..++    .| +++.+.++|++|++. ++++|.+.+ .++. .+.+
T Consensus         2 ~igi~gGsFdP~H~GHl~~~~~a~~~~d~v~v~~~~~~----~k-~~~~~~~~R~~ml~~a~~~~~~v~v-~~~e~~t~~   75 (159)
T PRK00168          2 KIAIYPGSFDPITNGHLDIIERASRLFDEVIVAVAINP----SK-KPLFSLEERVELIREATAHLPNVEV-VSFDGLLVD   75 (159)
T ss_pred             cEEEEeeecCCCCHHHHHHHHHHHHHCCEEEEEECCCC----CC-CCCCCHHHHHHHHHHHHcCCCCEEE-ecCCccHHH
Confidence            36899999999999999999999999999999987765    34 578999999999999 889998877 4443 3445


Q ss_pred             HHHHHHHhcCccEEEEcCCCCcCCCCCchHHHH---HhC----CEEEEcCCC--CCCCHHHHHHHHHhh
Q 021802          130 FMKKLFDEYNIDYIIHGDDPCVLPDGTDAYELA---KKA----GRYKQIKRT--EGVSSTDIVGRMLLC  189 (307)
Q Consensus       130 fle~ll~~l~~d~VV~GdD~~fg~~g~d~y~~l---k~~----g~v~vv~rt--~~VSST~Ir~rIl~~  189 (307)
                      ++    +.+++++++.|-|-..  +++.-....   +..    ..+..+...  ..||||.||+++...
T Consensus        76 ~~----~~~~~~~~~~gl~~w~--d~e~~~~~~~~~r~~~~~~~~i~~~~~~~~~~ISST~IR~~i~~g  138 (159)
T PRK00168         76 FA----REVGATVIVRGLRAVS--DFEYEFQMAGMNRKLAPEIETVFLMPSPEYSFISSSLVKEVARLG  138 (159)
T ss_pred             HH----HHcCCCEEEecCcchh--hHHHHHHHHHhCCCCCCCCcEEEEeCCCCcceecHHHHHHHHHcC
Confidence            54    5678999999965332  111000011   111    123233322  369999999999743

>cd02163 PPAT Phosphopantetheine adenylyltransferase

Probab=99.57  E-value=2.3e-14  Score=123.68  Aligned_cols=124  Identities=19%  Similarity=0.273  Sum_probs=87.7

Q ss_pred             EEEecccCcCCHHHHHHHHHHHHcCCeEEEEEeCChhhhhcCCCCCCCHHHHHHHHHH-ccCccEEEEcCCCc-ccHHHH
Q 021802           54 VYMDGCFDMMHYGHCNALRQARALGDQLVVGVVSDAEIIANKGPPVTPLHERMIMVNA-VKWVDEVISDAPYA-ITKDFM  131 (307)
Q Consensus        54 V~~~G~FD~lH~GH~~lL~qAk~~gd~LiVgV~sD~~i~~~Kg~pi~s~eER~~ll~~-~k~VD~Vv~~~py~-~t~dfl  131 (307)
                      +++.|+||++|.||..++++|++.+|+++++++.++    .| .++++.++|++|++. +++++.+.+ .++. .+.+++
T Consensus         2 ~i~gGsFdP~H~GHl~l~~~a~~~~d~v~v~~~~~~----~k-~~~~~~~~R~~ml~~a~~~~~~~~v-~~~es~t~~~l   75 (153)
T cd02163           2 AVYPGSFDPITNGHLDIIERASKLFDEVIVAVAVNP----SK-KPLFSLEERVELIREATKHLPNVEV-DGFDGLLVDFA   75 (153)
T ss_pred             EEEEeccCCCCHHHHHHHHHHHHHCCEEEEEEcCCC----CC-CCCCCHHHHHHHHHHHHcCCCCEEe-cCCcchHHHHH
Confidence            689999999999999999999999999999998765    34 478999999999998 778888877 4443 344554


Q ss_pred             HHHHHhcCccEEEEcCCCCcCCCCCchHHHHH--hC-----CEEEEcCCC--CCCCHHHHHHHHHhh
Q 021802          132 KKLFDEYNIDYIIHGDDPCVLPDGTDAYELAK--KA-----GRYKQIKRT--EGVSSTDIVGRMLLC  189 (307)
Q Consensus       132 e~ll~~l~~d~VV~GdD~~fg~~g~d~y~~lk--~~-----g~v~vv~rt--~~VSST~Ir~rIl~~  189 (307)
                          +.++++++++|-|-....  +.-..+..  ..     ..+..+...  ..+|||.||+++...
T Consensus        76 ----~~l~~~~~i~G~d~~~~~--e~~~~~~~~~r~~~~~~~~i~~~~~~~~~~iSST~IR~~~~~g  136 (153)
T cd02163          76 ----RKHGANVIVRGLRAVSDF--EYEFQMAGMNRKLAPEIETVFLMASPEYSFISSSLVKEIARFG  136 (153)
T ss_pred             ----HHcCCCEEEECCcchhhH--HHHHHHHHhCCCCCCCCcEEEEeCCCccceecHHHHHHHHHcC
Confidence                567899999996633211  11001110  00     123322222  259999999999854

Phosphopantetheine adenylyltransferase (PPAT). PPAT is an essential enzyme in bacteria, responsible for catalyzing the rate-limiting step in coenzyme A (CoA) biosynthesis. The dinucleotide-binding fold of PPAT is homologous to class I aminoacyl-tRNA synthetases. CoA has been shown to inhibit PPAT and competes with ATP, PhP, and dPCoA. PPAT is a homohexamer in E. coli.

>PLN02388 phosphopantetheine adenylyltransferase

Probab=99.57  E-value=1.3e-14  Score=128.54  Aligned_cols=136  Identities=21%  Similarity=0.232  Sum_probs=93.6

Q ss_pred             cCCCCeEEEEecccCcCCHHHHHHHHHHHHcC-CeEEEEEeCChhhhhcCC-CCCCCHHHHHHHHHHc-cC------ccE
Q 021802           47 KKKKPVRVYMDGCFDMMHYGHCNALRQARALG-DQLVVGVVSDAEIIANKG-PPVTPLHERMIMVNAV-KW------VDE  117 (307)
Q Consensus        47 ~~~~~~~V~~~G~FD~lH~GH~~lL~qAk~~g-d~LiVgV~sD~~i~~~Kg-~pi~s~eER~~ll~~~-k~------VD~  117 (307)
                      +.+...+|+++|+||++|.||+.+|++|.+++ +.++||+.+|+.....+. ..++|.++|.+.+++. .-      ++.
T Consensus        15 ~~~~~~~Vv~gGtFDgLH~GHq~LL~~A~~~a~~~vvIgft~~p~l~~k~~~~~I~~~e~R~~~l~~fl~~~~p~~~~~i   94 (177)
T PLN02388         15 PPNSYGAVVLGGTFDRLHDGHRLFLKAAAELARDRIVIGVCDGPMLSKKQFAELIQPIEERMHNVEEYIKSIKPELVVQA   94 (177)
T ss_pred             CCCcCCeEEEEecCCccCHHHHHHHHHHHHhhhcCEEEecCCChhhcccCCCcccCCHHHHHHHHHHHHHHcCCCceEEE
Confidence            33345579999999999999999999999998 479999999997533222 5799999999998872 11      122


Q ss_pred             EEEcCCCcccHHHHHHHHHhcCccEEEEcCCCCcCCCCCchHHHHHhCC----EEEE---cCC---CCCCCHHHHHHHHH
Q 021802          118 VISDAPYAITKDFMKKLFDEYNIDYIIHGDDPCVLPDGTDAYELAKKAG----RYKQ---IKR---TEGVSSTDIVGRML  187 (307)
Q Consensus       118 Vv~~~py~~t~dfle~ll~~l~~d~VV~GdD~~fg~~g~d~y~~lk~~g----~v~v---v~r---t~~VSST~Ir~rIl  187 (307)
                      +-++.||..+..       ..++|++|++..-..|...-+.++.  +.|    .+.+   +..   ..+||||+||+|+.
T Consensus        95 ~~i~D~~Gpt~~-------~~~~d~LVVS~ET~~g~~~IN~~R~--e~Gl~pL~i~~v~~v~~~~~~~kiSST~iR~~~~  165 (177)
T PLN02388         95 EPIIDPYGPSIV-------DENLEAIVVSKETLPGGLSVNKKRA--ERGLSQLKIEVVDIVPEESTGNKLSSTTLRRLEA  165 (177)
T ss_pred             EEecCCCCCccc-------CCCCCEEEEcHhHhhhHHHHHHHHH--HCCCCCeEEEEEEeEecCCCCCccCHHHHHHHHH
Confidence            223466654321       1468999999987766443343332  222    2332   222   35899999999998


Q ss_pred             hhhh
Q 021802          188 LCVR  191 (307)
Q Consensus       188 ~~~~  191 (307)
                      +..+
T Consensus       166 ~~~~  169 (177)
T PLN02388        166 EKAV  169 (177)
T ss_pred             HHHH
Confidence            7665

>PRK01170 phosphopantetheine adenylyltransferase/unknown domain fusion protein; Provisional

Probab=99.55  E-value=2.4e-14  Score=137.21  Aligned_cols=127  Identities=24%  Similarity=0.327  Sum_probs=92.4

Q ss_pred             EEEEecccCcCCHHHHHHHHHHHHcCCeEEEEEeCChhhhhcCCCCCCCHHHHHHHHHHc--cCccEEEE---cCCCccc
Q 021802           53 RVYMDGCFDMMHYGHCNALRQARALGDQLVVGVVSDAEIIANKGPPVTPLHERMIMVNAV--KWVDEVIS---DAPYAIT  127 (307)
Q Consensus        53 ~V~~~G~FD~lH~GH~~lL~qAk~~gd~LiVgV~sD~~i~~~Kg~pi~s~eER~~ll~~~--k~VD~Vv~---~~py~~t  127 (307)
                      +|++.|+||.+|.||..+|++|++++|+|+|||++|+.+.+.|.+| .|.++|.+++++.  +.++.+.+   +.||..+
T Consensus         2 ~V~vgGTFD~lH~GH~~lL~~A~~~gd~LiVgvt~D~~~~~~k~~~-~~~e~R~~~v~~fl~~~~~~~~i~~i~D~~Gpt   80 (322)
T PRK01170          2 ITVVGGTFSKLHKGHKALLKKAIETGDEVVIGLTSDEYVRKNKVYP-IPYEDRKRKLENFIKKFTNKFRIRPIDDRYGNT   80 (322)
T ss_pred             EEEEccccccCChHHHHHHHHHHHcCCEEEEEEccHHHHHhcCCCC-CCHHHHHHHHHHHHHhcCCcEEEEecCCCCCCC
Confidence            5999999999999999999999999999999999999887666667 9999999999993  56665433   3455432


Q ss_pred             HHHHHHHHHhcCccEEEEcCCCCcCCCCCchHHHHHhCC----EEEEcCC-----CCCCCHHHHHHHHHhh
Q 021802          128 KDFMKKLFDEYNIDYIIHGDDPCVLPDGTDAYELAKKAG----RYKQIKR-----TEGVSSTDIVGRMLLC  189 (307)
Q Consensus       128 ~dfle~ll~~l~~d~VV~GdD~~fg~~g~d~y~~lk~~g----~v~vv~r-----t~~VSST~Ir~rIl~~  189 (307)
                      .       ...++|++|++.+-..+...-+  +..++.|    ++.+++.     ...+|||+||+.....
T Consensus        81 ~-------~~~~~d~IVVS~ET~~~~~~IN--~~R~e~Gl~pleIv~I~~v~~~d~~~iSSTrIr~~eid~  142 (322)
T PRK01170         81 L-------YEEDYEIIVVSPETYQRALKIN--EIRIKNGLPPLKIVRVPYVLAEDLFPISSTRIINGEIDG  142 (322)
T ss_pred             c-------ccCCCCEEEEeccccccHHHHH--HHHHHCCCCceEEEEEEeEEcCCCCcccHHHHhhhhccc
Confidence            1       1257999999999766432211  2233333    3334433     2458999999876543

>PF01467 CTP_transf_2: Cytidylyltransferase; InterPro: IPR004820 This family includes []: Cholinephosphate cytidyltransferase (P49585 from SWISSPROT)

Probab=99.53  E-value=1.4e-14  Score=121.01  Aligned_cols=130  Identities=28%  Similarity=0.272  Sum_probs=76.7

Q ss_pred             EEecccCcCCHHHHHHHHHHHHcCCe-EEEEEeCChhhhhcCCCCCCCHHHHHHHHHHccCccE----------------
Q 021802           55 YMDGCFDMMHYGHCNALRQARALGDQ-LVVGVVSDAEIIANKGPPVTPLHERMIMVNAVKWVDE----------------  117 (307)
Q Consensus        55 ~~~G~FD~lH~GH~~lL~qAk~~gd~-LiVgV~sD~~i~~~Kg~pi~s~eER~~ll~~~k~VD~----------------  117 (307)
                      ++.|+||++|.||+.++++|++.++. +++++.++....+. +++++|.++|++|++.+...+.                
T Consensus         1 l~~GsFdP~H~GH~~~l~~a~~~~~~~~vi~v~~~~~~~k~-~~~~~~~~~R~~ml~~~~~~~~~i~v~~~e~~~~~~~~   79 (157)
T PF01467_consen    1 LFGGSFDPPHNGHLNLLREARELFDEDLVIVVPSDNSPHKD-KKPIFSFEERLEMLRAAFKDDPNIEVDDWELEQDKKKY   79 (157)
T ss_dssp             EEEE--TT--HHHHHHHHHHHHHSSESEEEEEEEEHHCHST-TSSSSTHHHHHHHHHHHHTTCTTEEEEEEHHHSSHHHS
T ss_pred             CeeeEcCcccHHHHHHHHHHHHhcccccccccccccccccc-ccccCcHHHHHHHHHHHHhhcCCccccchhHHhHhhhc
Confidence            57899999999999999999999987 67777776644321 1489999999999999777766                


Q ss_pred             ------EEEcCCC--cc-cHHHHHHHHHhcCccEEEEcCCCCcCCCCCchHHHHHhC-CEEEEcCCCCCCCHHHHHHH
Q 021802          118 ------VISDAPY--AI-TKDFMKKLFDEYNIDYIIHGDDPCVLPDGTDAYELAKKA-GRYKQIKRTEGVSSTDIVGR  185 (307)
Q Consensus       118 ------Vv~~~py--~~-t~dfle~ll~~l~~d~VV~GdD~~fg~~g~d~y~~lk~~-g~v~vv~rt~~VSST~Ir~r  185 (307)
                            ++++...  .+ .....+++++.+++.++..+.+..........+...... ..+........||||+||+|
T Consensus        80 ~~~~~~~v~g~D~~~~~~~~~~~~~~~~~~~~~v~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iSST~IR~~  157 (157)
T PF01467_consen   80 PDVKIYFVIGADNLRNFPKWRDWQEILKEVNIIVVSRGGDDPIETISDDEILEKYPLGIIFILDPPRNEISSTEIRER  157 (157)
T ss_dssp             TSSCEEEEEECTHHEEEEESTTHHHHHHHHHEEEEEHHHTTTHEEEEHCHHHHHTTCEEEEEEEGGGTTSSHHHHHHH
T ss_pred             cccccceeccCCceeeecCCCcHHHHHHhCCEEEEEcCCCCccchhhhccccccccceeEEEecCCCCccCHHHHhcC
Confidence                  4554440  00 001122334456666666664433211111122111121 12333444566999999987

Glycerol-3-phosphate cytidyltransferase (P27623 from SWISSPROT). CTP:cholinephosphate cytidylyltransferase (CCT) is a key regulatory enzyme in phosphatidylcholine biosynthesis that catalyzes the formation of CDP-choline. A comparison of the catalytic domains of CCTs from a wide variety of organisms reveals a large number of completely conserved residues. There may be a role for the conserved HXGH sequence in catalysis. The membrane-binding domain in rat CCT has been defined, and it has been suggested that lipids may play a role in inactivating the enzyme. A phosphorylation domain has been described [].; GO: 0016779 nucleotidyltransferase activity, 0009058 biosynthetic process; PDB: 1O6B_A 1H1T_A 1B6T_A 1GN8_A 1QJC_A 3ELB_A 3NBK_A 3NBA_A 1TFU_A 3LCJ_A ....

>cd02166 NMNAT_Archaea Nicotinamide/nicotinate mononucleotide adenylyltransferase, archaeal

Probab=99.52  E-value=2.4e-13  Score=118.72  Aligned_cols=126  Identities=20%  Similarity=0.202  Sum_probs=85.2

Q ss_pred             EEEEecccCcCCHHHHHHHHHHHHcCCeEEEEEeCChhhhhcCCCCCCCHHHHHHHHHH-ccCcc----EEEE-cCC-Cc
Q 021802           53 RVYMDGCFDMMHYGHCNALRQARALGDQLVVGVVSDAEIIANKGPPVTPLHERMIMVNA-VKWVD----EVIS-DAP-YA  125 (307)
Q Consensus        53 ~V~~~G~FD~lH~GH~~lL~qAk~~gd~LiVgV~sD~~i~~~Kg~pi~s~eER~~ll~~-~k~VD----~Vv~-~~p-y~  125 (307)
                      ++++.|.||++|.||+.++++|++.+|+|+++|.++...  .+....++.+||++|++. ++.+|    .+.. ..+ +.
T Consensus         1 ~~v~~G~FdP~H~GHl~~i~~a~~~~d~l~v~v~s~~~~--~~~~~~~~~~~R~~mi~~~~~~~~~~~~~v~v~~~~d~~   78 (163)
T cd02166           1 RALFIGRFQPFHLGHLKVIKWILEEVDELIIGIGSAQES--HTLENPFTAGERVLMIRRALEEEGIDLSRYYIIPVPDIE   78 (163)
T ss_pred             CeEEeeccCCCCHHHHHHHHHHHHHCCEEEEEecCCCCC--CCCCCCCCHHHHHHHHHHHHHhcCCCcCeEEEEecCCCC
Confidence            478999999999999999999999999999998765432  222455788999999994 66665    3433 122 12


Q ss_pred             ccHHHHHHHHHhc-CccEEEEcCCCCcCCCCCchHHHHHh-CCEEEEcCCC--CCCCHHHHHHHHHh
Q 021802          126 ITKDFMKKLFDEY-NIDYIIHGDDPCVLPDGTDAYELAKK-AGRYKQIKRT--EGVSSTDIVGRMLL  188 (307)
Q Consensus       126 ~t~dfle~ll~~l-~~d~VV~GdD~~fg~~g~d~y~~lk~-~g~v~vv~rt--~~VSST~Ir~rIl~  188 (307)
                      ..+.|.+.+.... ++|+++.|+++..        ...+. +..+..+++.  +++|+|.||++|..
T Consensus        79 ~~~~w~~~v~~~vp~~div~~g~~~~~--------~~f~~~g~~v~~~p~~~~~~~s~t~iR~~~~~  137 (163)
T cd02166          79 RNSLWVSYVESLTPPFDVVYSGNPLVA--------RLFKEAGYEVRRPPMFNREEYSGTEIRRLMLG  137 (163)
T ss_pred             chHHHHHHHHHHCCCCCEEEECchHHH--------HhhhhcCCeEecCCcccCCCCCHHHHHHHHHc
Confidence            2344444332222 5789999864221        12233 3455567764  47999999999873

This family of archaeal proteins exhibits nicotinamide-nucleotide adenylyltransferase (NMNAT) activity utilizing the salvage pathway to synthesize NAD. In some cases, the enzyme was tested and found also to have the activity of nicotinate-nucleotide adenylyltransferase an enzyme of NAD de novo biosynthesis, although with a higher Km. In some archaeal species, a number of proteins which are uncharacterized with respect to activity, are also present.

>TIGR00125 cyt_tran_rel cytidyltransferase-related domain

Probab=99.49  E-value=6.7e-14  Score=103.12  Aligned_cols=65  Identities=48%  Similarity=0.700  Sum_probs=57.2

Q ss_pred             EEEEecccCcCCHHHHHHHHHHHHcCCeEEEEEeCChhhhhcCCCCCCCHHHHHHHHHHccCccE
Q 021802           53 RVYMDGCFDMMHYGHCNALRQARALGDQLVVGVVSDAEIIANKGPPVTPLHERMIMVNAVKWVDE  117 (307)
Q Consensus        53 ~V~~~G~FD~lH~GH~~lL~qAk~~gd~LiVgV~sD~~i~~~Kg~pi~s~eER~~ll~~~k~VD~  117 (307)
                      ++++.|+||++|.||+.++++|++.++.+++++.+|+.....|..++++.++|.++++.|++++.
T Consensus         1 i~~~~G~Fdp~H~GH~~~l~~a~~~~~~~vv~i~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~   65 (66)
T TIGR00125         1 RVIFVGTFDPFHLGHLDLLERAKELFDELIVGVGSDQFVNPLKGEPVFSLEERLEMLKALKYVDE   65 (66)
T ss_pred             CEEEcCccCCCCHHHHHHHHHHHHhCCEEEEEECchHhccccCCCCCCCHHHHHHHHHHhccccC
Confidence            47899999999999999999999999989999988877655554599999999999999977653

Protein families that contain at least one copy of this domain include citrate lyase ligase, pantoate-beta-alanine ligase, glycerol-3-phosphate cytidyltransferase, ADP-heptose synthase, phosphocholine cytidylyltransferase, lipopolysaccharide core biosynthesis protein KdtB, the bifunctional protein NadR, and a number whose function is unknown. Many of these proteins are known to use CTP or ATP and release pyrophosphate.

>cd02173 ECT CTP:phosphoethanolamine cytidylyltransferase (ECT)

Probab=99.49  E-value=2.3e-14  Score=123.96  Aligned_cols=47  Identities=55%  Similarity=1.038  Sum_probs=43.7

Q ss_pred             CCeEEEEeCcccccCHHHHHHHHHHHhCCCEEEEEEeCcccccccCC
Q 021802          248 DARIIYIDGAFDLFHAGHVEILRIARGLGDFLLVGIHNDQTVRLKNP  294 (307)
Q Consensus       248 ~~~~v~~~G~FDl~H~GHi~~L~~a~~~g~~liVgv~~D~~v~~~~~  294 (307)
                      ++++||++|+||+||+||+++|++|+++||+|||||++|++++.+|+
T Consensus         1 ~~~iv~~~G~FD~~H~GHi~~L~~A~~lgd~liVgV~~D~~~~~~K~   47 (152)
T cd02173           1 GDKVVYVDGAFDLFHIGHIEFLEKARELGDYLIVGVHDDQTVNEYKG   47 (152)
T ss_pred             CCeEEEEcCcccCCCHHHHHHHHHHHHcCCEEEEEEeCcHHHHhhcC
Confidence            36899999999999999999999999999999999999999987553

CTP:phosphoethanolamine cytidylyltransferase (ECT) catalyzes the conversion of phosphoethanolamine to CDP-ethanolamine as part of the CDP-ethanolamine biosynthesis pathway. ECT expression in hepatocytes is localized predominantly to areas of the cytoplasm that are rich in rough endoplasmic reticulum. Several ECTs, including yeast and human ECT, have large repetitive sequences located within their N- and C-termini.

>TIGR01510 coaD_prev_kdtB pantetheine-phosphate adenylyltransferase, bacterial

Probab=99.46  E-value=1.2e-12  Score=113.15  Aligned_cols=121  Identities=20%  Similarity=0.270  Sum_probs=80.6

Q ss_pred             EEEecccCcCCHHHHHHHHHHHHcCCeEEEEEeCChhhhhcCCCCCCCHHHHHHHHHHcc-CccEEEEcCCCc-ccHHHH
Q 021802           54 VYMDGCFDMMHYGHCNALRQARALGDQLVVGVVSDAEIIANKGPPVTPLHERMIMVNAVK-WVDEVISDAPYA-ITKDFM  131 (307)
Q Consensus        54 V~~~G~FD~lH~GH~~lL~qAk~~gd~LiVgV~sD~~i~~~Kg~pi~s~eER~~ll~~~k-~VD~Vv~~~py~-~t~dfl  131 (307)
                      +++.|+||++|.||++++++|++.+|++++++..++    .| .+..+.++|++|++.+- +-+.+.+ .++. .+.+++
T Consensus         2 ~l~gGsFdP~H~GHl~l~~~a~~~~d~v~~~~~~~p----~k-~~~~~~~~R~~m~~~a~~~~~~~~v-~~~e~yt~dt~   75 (155)
T TIGR01510         2 ALYPGSFDPVTNGHLDIIKRAAALFDEVIVAVAKNP----SK-KPLFSLEERVELIKDATKHLPNVRV-DVFDGLLVDYA   75 (155)
T ss_pred             EEEEeecCCCcHHHHHHHHHHHHhCCEEEEEEcCCC----CC-CCCcCHHHHHHHHHHHHhhCCCeEE-cCccchHHHHH
Confidence            789999999999999999999999999999987543    34 47789999999999952 2233333 2332 334444


Q ss_pred             HHHHHhcCccEEEEcCCCCcCCCCCchHHHHHh---------C-CEEEEcCC--CCCCCHHHHHHHHHhh
Q 021802          132 KKLFDEYNIDYIIHGDDPCVLPDGTDAYELAKK---------A-GRYKQIKR--TEGVSSTDIVGRMLLC  189 (307)
Q Consensus       132 e~ll~~l~~d~VV~GdD~~fg~~g~d~y~~lk~---------~-g~v~vv~r--t~~VSST~Ir~rIl~~  189 (307)
                          +.++.++++.|-|-.....     .+++.         . ..+..+.-  ...||||.||+++...
T Consensus        76 ----~~l~~~~~i~G~~~~~~~~-----~~~~~~~~~r~~~~~~~~i~~~~~~~~~~iSST~IR~~i~~g  136 (155)
T TIGR01510        76 ----KELGATFIVRGLRAATDFE-----YELQMALMNKHLAPEIETVFLMASPEYAFVSSSLVKEIASFG  136 (155)
T ss_pred             ----HHcCCCEEEecCcchhhHH-----HHHHHHhhCcccccCCcEEEEeCCcchhhccHHHHHHHHHcC
Confidence                4578899999865332111     11111         0 11222222  2279999999999754

This model describes pantetheine-phosphate adenylyltransferase, the penultimate enzyme of coenzyme A (CoA) biosynthesis in bacteria. It does not show any strong homology to eukaryotic enzymes of coenzyme A biosynthesis. This protein was previously designated KdtB and postulated (because of cytidyltransferase homology and proximity to kdtA) to be an enzyme of LPS biosynthesis, a cytidyltransferase for 3-deoxy-D-manno-2-octulosonic acid. However, no activity toward that compound was found with either CTP or ATP. The phylogenetic distribution of this enzyme is more consistent with coenzyme A biosynthesis than with LPS biosynthesis.

>PLN02413 choline-phosphate cytidylyltransferase

Probab=99.44  E-value=1e-13  Score=130.05  Aligned_cols=54  Identities=35%  Similarity=0.581  Sum_probs=46.7

Q ss_pred             CCCCCeEEEEeCcccccCHHHHHHHHHHHhCC--CEEEEEEeCcccccccCCCcccc
Q 021802          245 PGPDARIIYIDGAFDLFHAGHVEILRIARGLG--DFLLVGIHNDQTVRLKNPSVSFI  299 (307)
Q Consensus       245 ~~~~~~~v~~~G~FDl~H~GHi~~L~~a~~~g--~~liVgv~~D~~v~~~~~~~~~~  299 (307)
                      |.....+||++|+|||||+||+++|++||++|  ++|||||++|+.++++|+. |+.
T Consensus        23 ~~~r~~rVyvdG~FDLfH~GHir~L~qAK~lg~~d~LIVGV~sDe~v~~~KGr-PIm   78 (294)
T PLN02413         23 PSDRPVRVYADGIYDLFHFGHARSLEQAKKLFPNTYLLVGCCNDELTHKYKGK-TVM   78 (294)
T ss_pred             CCCCceEEEEeCchhhCCHHHHHHHHHHHHhCCCCEEEEEecccHHHHhcCCC-CCC
Confidence            34456899999999999999999999999995  7999999999999887653 443

>cd02174 CCT CTP:phosphocholine cytidylyltransferase

Probab=99.44  E-value=1e-13  Score=119.82  Aligned_cols=47  Identities=45%  Similarity=0.901  Sum_probs=43.0

Q ss_pred             CeEEEEeCcccccCHHHHHHHHHHHhCC--CEEEEEEeCcccccccCCC
Q 021802          249 ARIIYIDGAFDLFHAGHVEILRIARGLG--DFLLVGIHNDQTVRLKNPS  295 (307)
Q Consensus       249 ~~~v~~~G~FDl~H~GHi~~L~~a~~~g--~~liVgv~~D~~v~~~~~~  295 (307)
                      .+.||++|+||+||+||+++|++|+++|  |+|||||++|++++++|+.
T Consensus         2 ~~rV~~~G~FDl~H~GHi~~L~~A~~lg~~d~LiVgV~sD~~~~~~k~~   50 (150)
T cd02174           2 PVRVYVDGCFDLFHYGHANALRQAKKLGPNDYLIVGVHSDEEIHKHKGP   50 (150)
T ss_pred             CeEEEEeCccCCCCHHHHHHHHHHHHhCCCCEEEEEEecCHHHhhcCCC
Confidence            3679999999999999999999999999  9999999999999876543

CTP:phosphocholine cytidylyltransferase (CCT) catalyzes the condensation of CTP and phosphocholine to form CDP-choline as the rate-limiting and regulatory step in the CDP-choline pathway. CCT is unique in that its enzymatic activity is regulated by the extent of its association with membrane structures. A current model posts that the elastic stress of the bilayer curvature is sensed by CCT and this governs the degree of membrane association, thus providing a mechanism for both positive and negative regulation of activity.

>cd02164 PPAT_CoAS phosphopantetheine adenylyltransferase domain of eukaryotic and archaeal bifunctional enzymes

Probab=99.44  E-value=2.2e-13  Score=116.80  Aligned_cols=122  Identities=26%  Similarity=0.346  Sum_probs=81.6

Q ss_pred             EEEEecccCcCCHHHHHHHHHHHHcC-CeEEEEEeCChhhhhcCC--CCCCCHHHHHHHHHHc-cCc------cEEEEcC
Q 021802           53 RVYMDGCFDMMHYGHCNALRQARALG-DQLVVGVVSDAEIIANKG--PPVTPLHERMIMVNAV-KWV------DEVISDA  122 (307)
Q Consensus        53 ~V~~~G~FD~lH~GH~~lL~qAk~~g-d~LiVgV~sD~~i~~~Kg--~pi~s~eER~~ll~~~-k~V------D~Vv~~~  122 (307)
                      +|++.|+||++|.||+.+|++|.+++ ++++||+.+|+... .|.  .++++.++|+++++.+ ...      +.+-+..
T Consensus         1 ~v~~GGtFD~lH~GH~~Ll~~a~~~~~d~v~vgvt~d~~~~-~k~~~~~i~s~e~R~~~l~~~l~~~~~~~~~~i~~i~d   79 (143)
T cd02164           1 KVAVGGTFDRLHDGHKILLSVAFLLAGEKLIIGVTSDELLK-NKSLKELIEPYEERIANLHEFLVDLKPTLKYEIVPIDD   79 (143)
T ss_pred             CEEEcccCCCCCHHHHHHHHHHHHHhcCCcEEEEeCchhcc-cCCCCCCCCCHHHHHHHHHHHHHhcCCCceEEEEEccC
Confidence            38899999999999999999999998 78999999988432 343  3689999999999884 221      1222245


Q ss_pred             CCcccHHHHHHHHHhcCccEEEEcCCCCcCCCCCchHHHHHhCC----EEEEcC------CCCCCCHHHHHH
Q 021802          123 PYAITKDFMKKLFDEYNIDYIIHGDDPCVLPDGTDAYELAKKAG----RYKQIK------RTEGVSSTDIVG  184 (307)
Q Consensus       123 py~~t~dfle~ll~~l~~d~VV~GdD~~fg~~g~d~y~~lk~~g----~v~vv~------rt~~VSST~Ir~  184 (307)
                      ||..+..       .-..|++|+...-..+...-+.  .-++.|    .+.+++      -...||||+||+
T Consensus        80 ~~Gpt~~-------~~~~d~lVVS~ET~~~~~~iN~--~R~~~gl~pl~i~~v~~v~~~~~~~kiSST~iR~  142 (143)
T cd02164          80 PYGPTGT-------DPDLEAIVVSPETYPGALKINR--KREENGLSPLEIVVVPLVKADEDGEKISSTRIRR  142 (143)
T ss_pred             CCCCccc-------CCCCCEEEEcHHHhhhHHHHHH--HHHHCCCCceeEEEEEeeccCCCCCeecchhhhC
Confidence            5554321       1357999999875544222221  122233    233322      235799999986

The PPAT domain of the bifunctional enzyme with PPAT and DPCK functions. The final two steps of the CoA biosynthesis pathway are catalyzed by phosphopantetheine adenylyltransferase (PPAT) and dephospho-CoA (dPCoA) kinase (DPCK). The PPAT reaction involves the reversible adenylation of 4'-phosphopantetheine to form 3'-dPCoA and PPi, and DPCK catalyses phosphorylation of the 3'-hydroxy group of the ribose moiety of dPCoA. In eukaryotes the two enzymes are part of a large multienzyme complex . Studies in Corynebacterium ammoniagenes suggested that separate enzymes were present, and this was confirmed through identification of the bacterial PPAT/CoAD.

>PRK00071 nadD nicotinic acid mononucleotide adenylyltransferase; Provisional

Probab=99.40  E-value=1e-11  Score=111.55  Aligned_cols=133  Identities=23%  Similarity=0.273  Sum_probs=91.0

Q ss_pred             eEEEEecccCcCCHHHHHHHHHHHHcC--CeEEEEEeCChhhhhcCC-CCCCCHHHHHHHHHH-ccCccEEEEc------
Q 021802           52 VRVYMDGCFDMMHYGHCNALRQARALG--DQLVVGVVSDAEIIANKG-PPVTPLHERMIMVNA-VKWVDEVISD------  121 (307)
Q Consensus        52 ~~V~~~G~FD~lH~GH~~lL~qAk~~g--d~LiVgV~sD~~i~~~Kg-~pi~s~eER~~ll~~-~k~VD~Vv~~------  121 (307)
                      +++++.|+|||+|.||+.++++|++..  |++++.+++.+.   .|. +...+.++|++|++. ++..+.+.++      
T Consensus         5 ~i~i~gGsFdP~H~GH~~l~~~a~~~~~~d~v~~~p~~~~~---~k~~~~~~~~~~R~~m~~~a~~~~~~~~v~~~E~~~   81 (203)
T PRK00071          5 RIGLFGGTFDPPHYGHLAIAEEAAERLGLDEVWFLPNPGPP---HKPQKPLAPLEHRLAMLELAIADNPRFSVSDIELER   81 (203)
T ss_pred             EEEEEeeCCCccCHHHHHHHHHHHHHcCCCEEEEEeCCCCC---CCCCCCCCCHHHHHHHHHHHhcCCCceEEeHHHHhC
Confidence            468999999999999999999999876  777777766552   343 468899999999987 4566655552      


Q ss_pred             CCCcccHHHHHHHHHhcC-cc-EEEEcCCC-CcCCCCCchHHHHHhCCEEEEcCCC------------------------
Q 021802          122 APYAITKDFMKKLFDEYN-ID-YIIHGDDP-CVLPDGTDAYELAKKAGRYKQIKRT------------------------  174 (307)
Q Consensus       122 ~py~~t~dfle~ll~~l~-~d-~VV~GdD~-~fg~~g~d~y~~lk~~g~v~vv~rt------------------------  174 (307)
                      ...+.|.+.++.+.++++ .+ +.++|.|- .....|.+..++++ ...+.+++|.                        
T Consensus        82 ~~~syT~~tl~~l~~~~p~~~~~fiiG~D~l~~l~~W~~~~~i~~-~~~~iv~~R~g~~~~~~~~~~~~~~~~~~~~i~~  160 (203)
T PRK00071         82 PGPSYTIDTLRELRARYPDVELVFIIGADALAQLPRWKRWEEILD-LVHFVVVPRPGYPLEALALPALQQLLEAAGAITL  160 (203)
T ss_pred             CCCCCHHHHHHHHHHHCCCCcEEEEEcHHHhhhcccccCHHHHHH-hCcEEEEeCCCCCccccchhHHHHhhccCCCEEE
Confidence            122345677776655552 22 78889884 33456765433443 3445555441                        


Q ss_pred             -----CCCCHHHHHHHHHh
Q 021802          175 -----EGVSSTDIVGRMLL  188 (307)
Q Consensus       175 -----~~VSST~Ir~rIl~  188 (307)
                           ..||||+||+++..
T Consensus       161 ~~~~~~~ISST~IR~~l~~  179 (203)
T PRK00071        161 LDVPLLAISSTAIRERIKE  179 (203)
T ss_pred             EeCCCCccCHHHHHHHHHc
Confidence                 24899999998864

>cd02165 NMNAT Nicotinamide/nicotinate mononucleotide adenylyltransferase

Probab=99.39  E-value=7.8e-12  Score=111.17  Aligned_cols=132  Identities=23%  Similarity=0.255  Sum_probs=91.6

Q ss_pred             EEEecccCcCCHHHHHHHHHHHHcC--CeEEEEEeCChhhhhcCCCCCCCHHHHHHHHHHc-cCccEEEEc------CCC
Q 021802           54 VYMDGCFDMMHYGHCNALRQARALG--DQLVVGVVSDAEIIANKGPPVTPLHERMIMVNAV-KWVDEVISD------APY  124 (307)
Q Consensus        54 V~~~G~FD~lH~GH~~lL~qAk~~g--d~LiVgV~sD~~i~~~Kg~pi~s~eER~~ll~~~-k~VD~Vv~~------~py  124 (307)
                      +++.|+||++|.||..+++.|++.+  |++++.+..++.   .|+....+.++|++|++.+ +..+.+.+.      ..+
T Consensus         2 ~i~gGsFdP~H~GH~~~~~~a~~~~~~d~v~~~~~~~~~---~k~~~~~~~~~R~~m~~~~~~~~~~i~v~~~e~~~~~~   78 (192)
T cd02165           2 ALFGGSFDPPHLGHLAIAEEALEELGLDRVLLLPSANPP---HKPPKPASFEHRLEMLKLAIEDNPKFEVSDIEIKRDGP   78 (192)
T ss_pred             eEEeeCCCCCCHHHHHHHHHHHHHcCCCEEEEEeCCCCC---CCCCCCCCHHHHHHHHHHHHcCCCCEEEeHHHHhCCCC
Confidence            6889999999999999999999998  898887766542   3435788999999999974 344444441      122


Q ss_pred             cccHHHHHHHHHhcC-cc-EEEEcCCC-CcCCCCCchHHHHHhCCEEEEcCCC--------------------------C
Q 021802          125 AITKDFMKKLFDEYN-ID-YIIHGDDP-CVLPDGTDAYELAKKAGRYKQIKRT--------------------------E  175 (307)
Q Consensus       125 ~~t~dfle~ll~~l~-~d-~VV~GdD~-~fg~~g~d~y~~lk~~g~v~vv~rt--------------------------~  175 (307)
                      +.|.+.++.+.+.++ .+ +.++|.|- ...+.|.+..++++ ...+.+++|.                          .
T Consensus        79 ~~t~~tl~~l~~~~p~~~~~~liG~D~l~~~~~W~~~~~i~~-~~~~iv~~R~g~~~~~~~~~~~~~~~~~~~~~~~~~~  157 (192)
T cd02165          79 SYTIDTLEELRERYPNAELYFIIGSDNLIRLPKWYDWEELLS-LVHLVVAPRPGYPIEDASLEKLLLPGGRIILLDNPLL  157 (192)
T ss_pred             CCHHHHHHHHHHhccCCCEEEEEcHHHhhhcccccCHHHHHH-hCcEEEEeCCCCCcccchhhhhccCCCcEEEecCCcc
Confidence            345677777666553 34 77788884 34456765444443 3455555552                          2


Q ss_pred             CCCHHHHHHHHHhh
Q 021802          176 GVSSTDIVGRMLLC  189 (307)
Q Consensus       176 ~VSST~Ir~rIl~~  189 (307)
                      .||||+||+++...
T Consensus       158 ~iSST~IR~~~~~g  171 (192)
T cd02165         158 NISSTEIRERLKNG  171 (192)
T ss_pred             ccCHHHHHHHHHcC
Confidence            49999999998744

Nicotinamide/nicotinate mononucleotide (NMN/ NaMN)adenylyltransferase (NMNAT). NMNAT represents the primary bacterial and eukaryotic adenylyltransferases for nicotinamide-nucleotide and for the deamido form, nicotinate nucleotide. It is an indispensable enzyme in the biosynthesis of NAD(+) and NADP(+). Nicotinamide-nucleotide adenylyltransferase synthesizes NAD via the salvage pathway, while nicotinate-nucleotide adenylyltransferase synthesizes the immediate precursor of NAD via the de novo pathway. Human NMNAT displays unique dual substrate specificity toward both NMN and NaMN, and can participate in both de novo and salvage pathways of NAD synthesis.

>COG1057 NadD Nicotinic acid mononucleotide adenylyltransferase [Coenzyme metabolism]

Probab=99.35  E-value=1.7e-11  Score=110.38  Aligned_cols=135  Identities=24%  Similarity=0.267  Sum_probs=98.7

Q ss_pred             CeEEEEecccCcCCHHHHHHHHHHHHcC--CeEEEEEeCChhhhhcCC-CCCCCHHHHHHHHHH-ccCccEEEE------
Q 021802           51 PVRVYMDGCFDMMHYGHCNALRQARALG--DQLVVGVVSDAEIIANKG-PPVTPLHERMIMVNA-VKWVDEVIS------  120 (307)
Q Consensus        51 ~~~V~~~G~FD~lH~GH~~lL~qAk~~g--d~LiVgV~sD~~i~~~Kg-~pi~s~eER~~ll~~-~k~VD~Vv~------  120 (307)
                      ...+++.|+||++|.||+.+.++|.+..  |+|++.++..+   ..|. +...+.++|++|++- ++..+...+      
T Consensus         3 ~~i~lfGGsFdP~H~GHl~ia~~~~~~l~ld~vi~~ps~~~---p~k~~~~~a~~~~R~~Ml~la~~~~~~~~v~~~e~~   79 (197)
T COG1057           3 KKIALFGGSFDPPHYGHLLIAEEALDQLGLDKVIFLPSPVP---PHKKKKELASAEHRLAMLELAIEDNPRFEVSDREIK   79 (197)
T ss_pred             ceEEEeccCCCCCCHHHHHHHHHHHHhcCCCeEEEecCCCC---CCCCCccCCCHHHHHHHHHHHHhcCCCcceeHHHHH
Confidence            4568999999999999999999999875  66666665554   2454 579999999999987 555544322      


Q ss_pred             cCCCcccHHHHHHHHHhcCcc---EEEEcCCC-CcCCCCCchHHHHHhCCEEEEcCCCC---------------------
Q 021802          121 DAPYAITKDFMKKLFDEYNID---YIIHGDDP-CVLPDGTDAYELAKKAGRYKQIKRTE---------------------  175 (307)
Q Consensus       121 ~~py~~t~dfle~ll~~l~~d---~VV~GdD~-~fg~~g~d~y~~lk~~g~v~vv~rt~---------------------  175 (307)
                      ..+.+.|.+.++.+.+++++|   +.++|.|- ...+.|.+ ++.+-+.+.+.+++|..                     
T Consensus        80 r~g~sYT~dTl~~~~~~~~p~~~~~fIiGaD~l~~l~~W~~-~~ell~~~~~vv~~Rp~~~~~~~~~~~~~~~~~~~~~~  158 (197)
T COG1057          80 RGGPSYTIDTLEHLRQEYGPDVELYFIIGADNLASLPKWYD-WDELLKLVTFVVAPRPGYGELELSLLSSGGAIILLDLP  158 (197)
T ss_pred             cCCCcchHHHHHHHHHHhCCCCcEEEEEehHHhhhhhhhhh-HHHHHHhCCEEEEecCCchhhhhhhhcCCceEEEccCc
Confidence            133345778888776678888   57888874 45566774 45555666777766632                     


Q ss_pred             --CCCHHHHHHHHHhh
Q 021802          176 --GVSSTDIVGRMLLC  189 (307)
Q Consensus       176 --~VSST~Ir~rIl~~  189 (307)
                        .||||.||+++...
T Consensus       159 ~~~ISSt~IR~~~~~~  174 (197)
T COG1057         159 RLDISSTEIRERIRRG  174 (197)
T ss_pred             cccCchHHHHHHHhCC
Confidence              49999999999754

>cd02168 NMNAT_Nudix Nicotinamide/nicotinate mononucleotide adenylyltransferase of bifunctional proteins, also containing a Nudix hydrolase domain

Probab=99.33  E-value=1.7e-11  Score=109.00  Aligned_cols=127  Identities=16%  Similarity=0.122  Sum_probs=82.4

Q ss_pred             EEEecccCcCCHHHHHHHHHHHHcCCeEEEEEeCChhhhhcCCCCCCCHHHHHHHHHHc-cC--c--cEEEEcCCC--c-
Q 021802           54 VYMDGCFDMMHYGHCNALRQARALGDQLVVGVVSDAEIIANKGPPVTPLHERMIMVNAV-KW--V--DEVISDAPY--A-  125 (307)
Q Consensus        54 V~~~G~FD~lH~GH~~lL~qAk~~gd~LiVgV~sD~~i~~~Kg~pi~s~eER~~ll~~~-k~--V--D~Vv~~~py--~-  125 (307)
                      ++++|.||++|.||+.++++|.+.+++|+|++.+.+.. +.+ ++.++.+||++|++.+ ..  +  +.+.+ .|.  . 
T Consensus         2 ~l~~GrF~P~H~GHl~~i~~a~~~~~~vii~i~s~~~~-~~~-~~p~~~~eR~~mi~~~~~~~~~~~~rv~i-~pi~D~~   78 (181)
T cd02168           2 LVYIGRFQPFHNGHLAVVLIALEKAKKVIILIGSARTA-RNI-KNPWTSEEREVMIEAALSDAGADLARVHF-RPLRDHL   78 (181)
T ss_pred             eEEeeccCCCCHHHHHHHHHHHHHCCeEEEEeCCCCCC-CCC-CCCcCHHHHHHHHHHHHhccCCCcceEEE-EecCCCC
Confidence            58999999999999999999999999999999776432 122 3668999999999984 22  2  23433 221  1 


Q ss_pred             -ccHHHHHHHH---H---hcCccEEEEcCCCCcCCCCCchHH-HHHhCCEEEEcCCCCCCCHHHHHHHHHh
Q 021802          126 -ITKDFMKKLF---D---EYNIDYIIHGDDPCVLPDGTDAYE-LAKKAGRYKQIKRTEGVSSTDIVGRMLL  188 (307)
Q Consensus       126 -~t~dfle~ll---~---~l~~d~VV~GdD~~fg~~g~d~y~-~lk~~g~v~vv~rt~~VSST~Ir~rIl~  188 (307)
                       .+.-+...+.   .   ..+++++++|.|...    ..-|. +..+. .+..++..+.+|||+||++|..
T Consensus        79 ~~~~~W~~~v~~~v~~~~~~~~~i~~~g~~kd~----~~~~~~lfpe~-~~~~~p~~~~iSsT~IR~~i~~  144 (181)
T cd02168          79 YSDNLWLAEVQQQVLEIAGGSASVGLVGHRKDA----SSYYLRSFPQW-DYLEVPNYPDLNATDIRRAYFE  144 (181)
T ss_pred             CChHHHHHHHHHhChHhhCCCCcEEEeCCccCC----CccceeecCCc-CeecCccccccCHHHHHHHHHh
Confidence             1222332221   1   135688888976531    11111 11121 2445566678999999999986

N-terminal NMNAT (Nicotinamide/nicotinate mononucleotide adenylyltransferase) domain of a novel bifunctional enzyme endowed with NMN adenylyltransferase and Nudix hydrolase activities. This domain is highly homologous to the archeal NMN adenyltransferase that catalyzes NAD synthesis from NMN and ATP. NMNAT is an essential enzyme in the biosynthesis of NAD(+) and NADP(+). Nicotinamide-nucleotide adenylyltransferase synthesizes NAD via the salvage pathway, while nicotinate-nucleotide adenylyltransferase synthesizes the immediate precursor of NAD via the de novo pathway. The C-terminal domain of this enzyme shares homology with the archaeal ADP-ribose pyrophosphatase, a member of the 'Nudix' hydrolase family.

>COG2870 RfaE ADP-heptose synthase, bifunctional sugar kinase/adenylyltransferase [Cell envelope biogenesis, outer membrane]

Probab=99.31  E-value=1.1e-12  Score=127.79  Aligned_cols=50  Identities=42%  Similarity=0.785  Sum_probs=45.2

Q ss_pred             CeEEEEeCcccccCHHHHHHHHHHHhCCCEEEEEEeCcccccc----cCCCccc
Q 021802          249 ARIIYIDGAFDLFHAGHVEILRIARGLGDFLLVGIHNDQTVRL----KNPSVSF  298 (307)
Q Consensus       249 ~~~v~~~G~FDl~H~GHi~~L~~a~~~g~~liVgv~~D~~v~~----~~~~~~~  298 (307)
                      .++|+++||||++|+||+.||++||++||.||||+|+|.++++    .||++|.
T Consensus       332 ~~vvfTNGcFDIlH~GHvsyL~~Ar~lgd~Livg~NsDaSvkrLKG~~RPin~~  385 (467)
T COG2870         332 KKVVFTNGCFDILHAGHVTYLAQARALGDRLIVGVNSDASVKRLKGESRPINSE  385 (467)
T ss_pred             CeEEEecchhhhccccHHHHHHHHHhhCCeEEEEeccchhhhhhcCCCCCCCcH
Confidence            4699999999999999999999999999999999999999987    3555554

>PRK13964 coaD phosphopantetheine adenylyltransferase; Provisional

Probab=99.31  E-value=3e-11  Score=103.40  Aligned_cols=122  Identities=23%  Similarity=0.245  Sum_probs=82.7

Q ss_pred             EEEEecccCcCCHHHHHHHHHHHHcCCeEEEEEeCChhhhhcCCCCCCCHHHHHHHHHH-ccCccEEEEcCCC-cccHHH
Q 021802           53 RVYMDGCFDMMHYGHCNALRQARALGDQLVVGVVSDAEIIANKGPPVTPLHERMIMVNA-VKWVDEVISDAPY-AITKDF  130 (307)
Q Consensus        53 ~V~~~G~FD~lH~GH~~lL~qAk~~gd~LiVgV~sD~~i~~~Kg~pi~s~eER~~ll~~-~k~VD~Vv~~~py-~~t~df  130 (307)
                      ++++.|+|||+|.||+.++++|.+++|+++|++..++    .| ++.++.++|+++++. ++..+.+-+...+ ....+|
T Consensus         3 iai~~GSFDPih~GHl~ii~~A~~~~D~v~v~v~~np----~K-~~~~s~e~R~~~l~~~~~~~~~v~v~~~~~~l~v~~   77 (140)
T PRK13964          3 IAIYPGSFDPFHKGHLNILKKALKLFDKVYVVVSINP----DK-SNASDLDSRFKNVKNKLKDFKNVEVLINENKLTAEI   77 (140)
T ss_pred             EEEEeeeeCCCCHHHHHHHHHHHHhCCEEEEEeccCC----CC-CCCCCHHHHHHHHHHHHcCCCCcEEecCcCCcHHHH
Confidence            6899999999999999999999999999999998775    35 478999999999976 4555555441111 233455


Q ss_pred             HHHHHHhcCccEEEEcCCCCcCCCCCchHHHH-----HhC-C--E-EEEcCC--CCCCCHHHHHHHHH
Q 021802          131 MKKLFDEYNIDYIIHGDDPCVLPDGTDAYELA-----KKA-G--R-YKQIKR--TEGVSSTDIVGRML  187 (307)
Q Consensus       131 le~ll~~l~~d~VV~GdD~~fg~~g~d~y~~l-----k~~-g--~-v~vv~r--t~~VSST~Ir~rIl  187 (307)
                      .    ++.+++++|.|=.-..+    =.|+..     +.. .  . +.....  ..-||||.||+...
T Consensus        78 ~----~~~~a~~ivrGlR~~~D----feyE~~~a~~n~~l~~~ietvfl~~~~~~~~iSSs~vre~~~  137 (140)
T PRK13964         78 A----KKLGANFLIRSARNNID----FQYEIVLAAGNKSLNNDLETILIIPDYDKIEYSSTLLRHKKF  137 (140)
T ss_pred             H----HHCCCeEEEEecCCCcc----HHHHHHHHHHHHhhcCCCeEEEeecCCCCCEEeHHHHHHHHH
Confidence            5    56899999999643211    013221     111 1  1 222222  34699999998653

>TIGR00482 nicotinate (nicotinamide) nucleotide adenylyltransferase

Probab=99.31  E-value=3.4e-11  Score=107.42  Aligned_cols=129  Identities=26%  Similarity=0.323  Sum_probs=86.6

Q ss_pred             EecccCcCCHHHHHHHHHHHHcC--CeEEEEEeCChhhhhcCC-CCCCCHHHHHHHHHH-ccCccEEEEc------CCCc
Q 021802           56 MDGCFDMMHYGHCNALRQARALG--DQLVVGVVSDAEIIANKG-PPVTPLHERMIMVNA-VKWVDEVISD------APYA  125 (307)
Q Consensus        56 ~~G~FD~lH~GH~~lL~qAk~~g--d~LiVgV~sD~~i~~~Kg-~pi~s~eER~~ll~~-~k~VD~Vv~~------~py~  125 (307)
                      +.|+||++|.||+.++++|++..  |++++.+...+.   .|. +...+.++|++|++. ++..+.+.++      ...+
T Consensus         2 ~gGsFdP~H~GHl~l~~~a~~~~~~d~v~~~p~~~~p---~k~~~~~~~~~~R~~m~~~a~~~~~~~~v~~~E~~~~~~s   78 (193)
T TIGR00482         2 FGGSFDPIHYGHLLLAEEALDHLDLDKVIFVPTANPP---HKKTYEAASSHHRLAMLKLAIEDNPKFEVDDFEIKRGGPS   78 (193)
T ss_pred             ccccCCccCHHHHHHHHHHHHHcCCCEEEEEeCCCCC---CCCCCCCCCHHHHHHHHHHHHhcCCCEEEeHHHHhCCCCC
Confidence            57999999999999999999875  677776665542   343 455799999999985 5555555442      1123


Q ss_pred             ccHHHHHHHHHhc-Ccc-EEEEcCCC-CcCCCCCchHHHHHhCCEEEEcCCC----------------------------
Q 021802          126 ITKDFMKKLFDEY-NID-YIIHGDDP-CVLPDGTDAYELAKKAGRYKQIKRT----------------------------  174 (307)
Q Consensus       126 ~t~dfle~ll~~l-~~d-~VV~GdD~-~fg~~g~d~y~~lk~~g~v~vv~rt----------------------------  174 (307)
                      .|.+.++.+-+++ +.+ +.++|.|- .....|.+-.++++. ..+.+++|.                            
T Consensus        79 yT~~tl~~l~~~~p~~~~~~iiG~D~l~~l~~W~~~~~i~~~-~~~iv~~R~g~~~~~~~~~~~~~~~~~~~i~~~~~~~  157 (193)
T TIGR00482        79 YTIDTLKHLKKKYPDVELYFIIGADALRSFPLWKDWQELLEL-VHLVIVPRPGYTLDKALLEKAILRMHHGNLTLLHNPR  157 (193)
T ss_pred             CHHHHHHHHHHHCCCCeEEEEEcHHHhhhhccccCHHHHHHh-CcEEEEeCCCCCcchhhhHHHHhcccCCcEEEEcCCc
Confidence            4567777666655 233 78889884 334467654344443 345555552                            


Q ss_pred             CCCCHHHHHHHHHh
Q 021802          175 EGVSSTDIVGRMLL  188 (307)
Q Consensus       175 ~~VSST~Ir~rIl~  188 (307)
                      ..||||+||+++.+
T Consensus       158 ~~iSST~IR~~l~~  171 (193)
T TIGR00482       158 VPISSTEIRQRIRQ  171 (193)
T ss_pred             cccCHHHHHHHHHc
Confidence            24899999998864

This model represents the predominant bacterial/eukaryotic adenylyltransferase for nicotinamide-nucleotide, its deamido form nicotinate nucleotide, or both. The first activity, nicotinamide-nucleotide adenylyltransferase (EC 2.7.7.1), synthesizes NAD by the salvage pathway, while the second, nicotinate-nucleotide adenylyltransferase (EC 2.7.7.18) synthesizes the immediate precursor of NAD by the de novo pathway. In E. coli, NadD activity is biased toward the de novo pathway while salvage activity is channeled through the multifunctional NadR protein, but this division of labor may be exceptional. The given name of this model, nicotinate (nicotinamide) nucleotide adenylyltransferase, reflects the lack of absolute specificity with respect to substrate amidation state in most species.

>PRK01153 nicotinamide-nucleotide adenylyltransferase; Provisional

Probab=99.30  E-value=5.4e-11  Score=105.15  Aligned_cols=125  Identities=21%  Similarity=0.255  Sum_probs=82.4

Q ss_pred             EEEEecccCcCCHHHHHHHHHHHHcCCeEEEEEeCChhhhhcCCCCCCCHHHHHHHHHHc-c--Cc--cEEEEcCCC---
Q 021802           53 RVYMDGCFDMMHYGHCNALRQARALGDQLVVGVVSDAEIIANKGPPVTPLHERMIMVNAV-K--WV--DEVISDAPY---  124 (307)
Q Consensus        53 ~V~~~G~FD~lH~GH~~lL~qAk~~gd~LiVgV~sD~~i~~~Kg~pi~s~eER~~ll~~~-k--~V--D~Vv~~~py---  124 (307)
                      ++++.|.||++|.||+.++++|.+.+|+|++++.+...-  .+..+.++.+||++|++.. .  .+  +.+.. .|.   
T Consensus         2 ~gl~~G~F~P~H~GHl~~i~~a~~~~d~v~v~i~s~~~~--~~~~~p~~~~~R~~mi~~a~~~~~~~~~~~~~-~pi~D~   78 (174)
T PRK01153          2 RALFIGRFQPFHKGHLEVIKWILEEVDELIIGIGSAQES--HTLKNPFTAGERILMIRKALEEEGIDLSRYYI-IPIPDI   78 (174)
T ss_pred             EEEEeeccCCCCHHHHHHHHHHHHhCCEEEEEecCCCCC--CCCCCCCCHHHHHHHHHHHHhcCCCCcceeeE-ecCCCc
Confidence            689999999999999999999999999999988653211  2224457899999999863 2  22  23433 332   


Q ss_pred             cccHHHHHHHHHh-cCccEEEEcCCCCcCCCCCchHHHHHhC-CEEEEcC--CCCCCCHHHHHHHHHh
Q 021802          125 AITKDFMKKLFDE-YNIDYIIHGDDPCVLPDGTDAYELAKKA-GRYKQIK--RTEGVSSTDIVGRMLL  188 (307)
Q Consensus       125 ~~t~dfle~ll~~-l~~d~VV~GdD~~fg~~g~d~y~~lk~~-g~v~vv~--rt~~VSST~Ir~rIl~  188 (307)
                      ..+..|...+... .++|.++.|+.+.        ..+.+.. ..+...+  +...+|+|+||++|..
T Consensus        79 ~~~~~w~~~v~~~~~~~d~v~~~~~y~--------~~~f~~~g~~v~~~p~~~~~~iSsT~IR~~i~~  138 (174)
T PRK01153         79 EFNSIWVSHVESYTPPFDVVYTGNPLV--------ARLFREAGYEVRQPPMFNREEYSGTEIRRRMIE  138 (174)
T ss_pred             chHHHHHHHHHHhCCCCCEEEECChHH--------HHhchhhCCeEecCCccccCCCCHHHHHHHHHc
Confidence            1234454443222 3678898886321        1222333 3445555  4468999999999974

>COG0615 TagD Cytidylyltransferase [Cell envelope biogenesis, outer membrane / Lipid metabolism]

Probab=99.30  E-value=2.2e-12  Score=109.96  Aligned_cols=49  Identities=41%  Similarity=0.702  Sum_probs=42.1

Q ss_pred             EEEEeCcccccCHHHHHHHHHHHhCCCEEEEEEeCcccccc---cCCCcccc
Q 021802          251 IIYIDGAFDLFHAGHVEILRIARGLGDFLLVGIHNDQTVRL---KNPSVSFI  299 (307)
Q Consensus       251 ~v~~~G~FDl~H~GHi~~L~~a~~~g~~liVgv~~D~~v~~---~~~~~~~~  299 (307)
                      .|+++|+||+||+||+++|++||++||+|+|.+.+|+++.+   .+|++|++
T Consensus         3 rV~~~GtFDilH~GHi~~L~~Ak~lGd~liVv~a~de~~~~~~k~~pi~~~~   54 (140)
T COG0615           3 RVWADGTFDILHPGHIEFLRQAKKLGDELIVVVARDETVIKRKKRKPIMPEE   54 (140)
T ss_pred             EEEEeeEEEEechhHHHHHHHHHHhCCeEEEEEeccHHHHHhcCCCCCCCHH
Confidence            49999999999999999999999999999999999988765   34555543

>PRK08887 nicotinic acid mononucleotide adenylyltransferase; Provisional

Probab=99.26  E-value=1.1e-10  Score=102.98  Aligned_cols=130  Identities=15%  Similarity=0.104  Sum_probs=86.7

Q ss_pred             EEEEecccCcCCHHHHHHHHHHHHcCCeEEEEEeCChhhhhcCCCCCCCHHHHHHHHHHc-cCc--cEEEEc--------
Q 021802           53 RVYMDGCFDMMHYGHCNALRQARALGDQLVVGVVSDAEIIANKGPPVTPLHERMIMVNAV-KWV--DEVISD--------  121 (307)
Q Consensus        53 ~V~~~G~FD~lH~GH~~lL~qAk~~gd~LiVgV~sD~~i~~~Kg~pi~s~eER~~ll~~~-k~V--D~Vv~~--------  121 (307)
                      ++++.|+||++|.||+.+++++ +..|++++.+....   ..+ ++..+.++|++|++.+ +..  +.+.++        
T Consensus         4 i~ifGGSFDP~H~GHl~ia~~~-~~~d~v~~vP~~~~---~~~-k~~~~~~~R~~M~~~ai~~~~~~~~~v~~~E~~~~~   78 (174)
T PRK08887          4 IAVFGSAFNPPSLGHKSVIESL-SHFDLVLLVPSIAH---AWG-KTMLDYETRCQLVDAFIQDLGLSNVQRSDIEQELYA   78 (174)
T ss_pred             EEEeCCCCCCCCHHHHHHHHHh-hcCCEEEEEECCCC---ccc-CCCCCHHHHHHHHHHHHhccCCCceEEehHHhhhcc
Confidence            5799999999999999999996 45688887765421   112 3667999999999873 222  234331        


Q ss_pred             -CCCcccHHHHHHHHHhcC-cc-EEEEcCCCC-cCCCCCchHHHHHhCCEEEEcCCCCCCCHHHHHHHHHh
Q 021802          122 -APYAITKDFMKKLFDEYN-ID-YIIHGDDPC-VLPDGTDAYELAKKAGRYKQIKRTEGVSSTDIVGRMLL  188 (307)
Q Consensus       122 -~py~~t~dfle~ll~~l~-~d-~VV~GdD~~-fg~~g~d~y~~lk~~g~v~vv~rt~~VSST~Ir~rIl~  188 (307)
                       .+...|.+.++.+.++++ .+ ++++|.|-. ..+.|.+ ++.+.+...+.+.++...||||+||+++..
T Consensus        79 ~~~~~yT~~tl~~l~~~~p~~~~~~iiG~D~l~~l~~W~~-~~~i~~~~~l~~~~~~~~ISST~IR~~l~~  148 (174)
T PRK08887         79 PDESVTTYALLTRLQELYPEADLTFVIGPDNFLKFAKFYK-ADEITQRWTVMACPEKVPIRSTDIRNALQN  148 (174)
T ss_pred             CCCCcchHHHHHHHHHHCCCCeEEEEEccchHHHHHHhCC-HHHHHhhCeEEEeCCCCCcCHHHHHHHHHc
Confidence             111234566766655552 23 566688743 3345554 444444556777777778999999999974

>cd02167 NMNAT_NadR Nicotinamide/nicotinate mononucleotide adenylyltransferase of bifunctional NadR-like proteins

Probab=99.26  E-value=5e-11  Score=103.71  Aligned_cols=126  Identities=20%  Similarity=0.198  Sum_probs=81.6

Q ss_pred             EEEecccCcCCHHHHHHHHHHHHcCCeEEEEEeCChhhhhcCC-CCCCCHHHHHHHHHHc-cCccEEEE------cCCCc
Q 021802           54 VYMDGCFDMMHYGHCNALRQARALGDQLVVGVVSDAEIIANKG-PPVTPLHERMIMVNAV-KWVDEVIS------DAPYA  125 (307)
Q Consensus        54 V~~~G~FD~lH~GH~~lL~qAk~~gd~LiVgV~sD~~i~~~Kg-~pi~s~eER~~ll~~~-k~VD~Vv~------~~py~  125 (307)
                      ++++|.||++|.||+.++++|.+.+|+|+|++.+.+.   .|. +..+|.++|++|++.. +.-+.+.+      +.|+.
T Consensus         2 gl~~G~F~P~H~GHl~li~~a~~~~d~v~vi~~~~~~---~~~~~~~~~~~~R~~mi~~a~~~~~~~~v~~~~~~d~~~~   78 (158)
T cd02167           2 GIVFGKFAPLHTGHVYLIYKALSQVDELLIIVGSDDT---RDDARTGLPLEKRLRWLREIFPDQENIVVHTLNEPDIPEY   78 (158)
T ss_pred             EEEeeccCCCCHHHHHHHHHHHHHCCEEEEEECCCCc---ccccCCCCCHHHHHHHHHHHhcCCCCEEEEeCCCCCCCCC
Confidence            5789999999999999999999999999999988763   232 5678999999999984 43233322      23321


Q ss_pred             c--cHHHH---HHHHHhc---CccEEEEcCCCCcCCCCCchHHHHHh-CCEEEEcC--C-CCCCCHHHHHHHHH
Q 021802          126 I--TKDFM---KKLFDEY---NIDYIIHGDDPCVLPDGTDAYELAKK-AGRYKQIK--R-TEGVSSTDIVGRML  187 (307)
Q Consensus       126 ~--t~dfl---e~ll~~l---~~d~VV~GdD~~fg~~g~d~y~~lk~-~g~v~vv~--r-t~~VSST~Ir~rIl  187 (307)
                      .  -..+.   ...+.+.   ++|.++.|+++..     ..|..... +..+..++  | ...+|+|.||+-..
T Consensus        79 ~~~w~~w~~~v~~~v~~~~~~~~~~vf~~~~~~~-----~~~~~~~~~~~~~~~v~~~r~~~~iSaT~IR~~p~  147 (158)
T cd02167          79 PNGWDIWSNRVKTLIAENTRCRPDIVFTAEEYEA-----AFELVLAYLGAQVVLVDPDRTDISVSATQIRENPF  147 (158)
T ss_pred             chhHHHHHHHHHHHHhhhcCCCCCEEEEccCcch-----hhhhHhhcCCCeEEEeccccccCCcCHHHHHhCHH
Confidence            1  11223   3333321   6789999977532     11111112 22444433  2 35799999998654

NMNAT domain of NadR protein. The NadR protein (NadR) is a bifunctional enzyme possessing both NMN adenylytransferase (NMNAT) and ribosylnicotinamide kinase (RNK) activities. Its function is essential for the growth and survival of H. influenzae and thus may present a new highly specific anti-infectious drug target. The N-terminal domain that hosts the NMNAT activity is closely related to archaeal NMNAT. The bound NAD at the active site of the NMNAT domain reveals several critical interactions between NAD and the protein.The NMNAT domain of hiNadR defines yet another member of the pyridine nucleotide adenylyltransferase

>PRK05379 bifunctional nicotinamide mononucleotide adenylyltransferase/ADP-ribose pyrophosphatase; Provisional

Probab=99.26  E-value=9.3e-11  Score=113.47  Aligned_cols=132  Identities=17%  Similarity=0.179  Sum_probs=87.6

Q ss_pred             CCeEEEEecccCcCCHHHHHHHHHHHHcCCeEEEEEeCChhhhhcCCCCCCCHHHHHHHHHHc-cCcc--EEEEcCCC--
Q 021802           50 KPVRVYMDGCFDMMHYGHCNALRQARALGDQLVVGVVSDAEIIANKGPPVTPLHERMIMVNAV-KWVD--EVISDAPY--  124 (307)
Q Consensus        50 ~~~~V~~~G~FD~lH~GH~~lL~qAk~~gd~LiVgV~sD~~i~~~Kg~pi~s~eER~~ll~~~-k~VD--~Vv~~~py--  124 (307)
                      +..+++++|.||++|.||+.++++|++.+|+|+|++.+...-. .+ +..++.+||++|++.+ +.+|  .+.+ .|.  
T Consensus         5 ~~~~~~~~G~F~P~H~GHl~~i~~a~~~~d~l~v~i~s~~~~~-~~-~~~~~~~~R~~mi~~~~~~~~~~r~~~-~pi~d   81 (340)
T PRK05379          5 RYDYLVFIGRFQPFHNGHLAVIREALSRAKKVIVLIGSADLAR-SI-KNPFSFEERAQMIRAALAGIDLARVTI-RPLRD   81 (340)
T ss_pred             cceEEEEeeccCCCCHHHHHHHHHHHHHCCEEEEEEccCCCCC-cC-CCCCCHHHHHHHHHHHhhcCCCceEEE-EECCC
Confidence            3457899999999999999999999999999999998653211 12 3458999999999984 4443  3433 231  


Q ss_pred             c-c-cHHHHHH---HHH---hcCccEEEEcCCCCcCCCCCchHH-HHHhCCEEEEcCCCCCCCHHHHHHHHHhh
Q 021802          125 A-I-TKDFMKK---LFD---EYNIDYIIHGDDPCVLPDGTDAYE-LAKKAGRYKQIKRTEGVSSTDIVGRMLLC  189 (307)
Q Consensus       125 ~-~-t~dfle~---ll~---~l~~d~VV~GdD~~fg~~g~d~y~-~lk~~g~v~vv~rt~~VSST~Ir~rIl~~  189 (307)
                      . . +.-+...   ...   ..++|++++|.|...    ..-|. +..+.+ +..++..+++|+|+||++|...
T Consensus        82 ~~~~~~~W~~~v~~~v~~~~~~~~~~~~~g~~~~~----~~~~~~~f~~~~-~~~~~~~~~~s~T~iR~~~~~~  150 (340)
T PRK05379         82 SLYNDSLWLAEVQAAVAEHAGADARIGLIGHEKDA----SSYYLRSFPQWE-LVDVPNTEDLSATEIRDAYFEG  150 (340)
T ss_pred             CCcChHHHHHHHHHHHHhccCCCCcEEEECCcCCC----ChHHHHhccccc-cccCCcccccCccHHHHHHHcC
Confidence            1 1 2223222   221   257899999977521    11221 112222 3456667899999999999864

>PRK06973 nicotinic acid mononucleotide adenylyltransferase; Provisional

Probab=99.25  E-value=8.3e-11  Score=109.14  Aligned_cols=117  Identities=21%  Similarity=0.181  Sum_probs=76.8

Q ss_pred             eEEEEecccCcCCHHHHHHHHHHHHcC--CeEEEEEeCChhhhhcCCCCCCCHHHHHHHHHH-ccCcc----EEEE----
Q 021802           52 VRVYMDGCFDMMHYGHCNALRQARALG--DQLVVGVVSDAEIIANKGPPVTPLHERMIMVNA-VKWVD----EVIS----  120 (307)
Q Consensus        52 ~~V~~~G~FD~lH~GH~~lL~qAk~~g--d~LiVgV~sD~~i~~~Kg~pi~s~eER~~ll~~-~k~VD----~Vv~----  120 (307)
                      +++++.|+||++|.||+.++++|.+..  |++++.+..++   ..| ....+.++|++|++. ++..+    .+.+    
T Consensus        23 ~IgifGGSFdPiH~GHl~ia~~~~~~l~ld~v~~iP~~~p---p~K-~~~~~~~~Rl~M~~lAi~~~~~~~~~~~v~~~E   98 (243)
T PRK06973         23 RIGILGGTFDPIHDGHLALARRFADVLDLTELVLIPAGQP---WQK-ADVSAAEHRLAMTRAAAASLVLPGVTVRVATDE   98 (243)
T ss_pred             eEEEECCCCCCCcHHHHHHHHHHHHHcCCCEEEEEECCcC---CCC-CCCCCHHHHHHHHHHHHHhccCCCceEEEeHhh
Confidence            357999999999999999999999874  78877776654   234 567799999999986 33221    2222    


Q ss_pred             --cCCCcccHHHHHHHHHhcCcc---EEEEcCCC-CcCCCCCchHHHHHhCCEEEEcCC
Q 021802          121 --DAPYAITKDFMKKLFDEYNID---YIIHGDDP-CVLPDGTDAYELAKKAGRYKQIKR  173 (307)
Q Consensus       121 --~~py~~t~dfle~ll~~l~~d---~VV~GdD~-~fg~~g~d~y~~lk~~g~v~vv~r  173 (307)
                        ....++|.+.++.+-+++.++   ++++|.|- .....|.+-.++++. ..+.+++|
T Consensus        99 i~~~g~syTidTL~~l~~~~~p~~~~~fiiG~D~l~~l~~W~~~~~L~~~-~~lvV~~R  156 (243)
T PRK06973         99 IEHAGPTYTVDTLARWRERIGPDASLALLIGADQLVRLDTWRDWRRLFDY-AHLCAATR  156 (243)
T ss_pred             hhCCCCCcHHHHHHHHHHHcCCCCCEEEEEchhhHhhcCCcccHHHHHHh-CCEEEEEC
Confidence              112234567777776667444   78889885 344567654334333 34444444

>PRK07152 nadD putative nicotinate-nucleotide adenylyltransferase; Validated

Probab=99.19  E-value=3.6e-10  Score=109.27  Aligned_cols=133  Identities=24%  Similarity=0.208  Sum_probs=90.8

Q ss_pred             EEEEecccCcCCHHHHHHHHHHHHc--CCeEEEEEeCChhhhhcCC-CCCCCHHHHHHHHHH-ccCccEEEEc------C
Q 021802           53 RVYMDGCFDMMHYGHCNALRQARAL--GDQLVVGVVSDAEIIANKG-PPVTPLHERMIMVNA-VKWVDEVISD------A  122 (307)
Q Consensus        53 ~V~~~G~FD~lH~GH~~lL~qAk~~--gd~LiVgV~sD~~i~~~Kg-~pi~s~eER~~ll~~-~k~VD~Vv~~------~  122 (307)
                      ++++.|+|||+|.||+.++++|.+.  .|++++.+...+   ..|. .+..+.++|++|++. ++..+.+.++      .
T Consensus         3 i~i~gGsFdP~H~GHl~la~~a~~~~~~d~v~~~p~~~~---p~K~~~~~~~~~~R~~m~~~a~~~~~~~~v~~~E~~~~   79 (342)
T PRK07152          3 IAIFGGSFDPIHKGHINIAKKAIKKLKLDKLFFVPTYIN---PFKKKQKASNGEHRLNMLKLALKNLPKMEVSDFEIKRQ   79 (342)
T ss_pred             EEEEeeCCCCcCHHHHHHHHHHHHHhCCCEEEEEeCCCC---CCCCCCCCCCHHHHHHHHHHHHhhCCCeEEeHHHHhCC
Confidence            5799999999999999999999986  378887775544   2454 345556999999975 4444555441      1


Q ss_pred             CCcccHHHHHHHHHhcC-cc-EEEEcCCC-CcCCCCCchHHHHHhCCEEEEcCCC--------------------CCCCH
Q 021802          123 PYAITKDFMKKLFDEYN-ID-YIIHGDDP-CVLPDGTDAYELAKKAGRYKQIKRT--------------------EGVSS  179 (307)
Q Consensus       123 py~~t~dfle~ll~~l~-~d-~VV~GdD~-~fg~~g~d~y~~lk~~g~v~vv~rt--------------------~~VSS  179 (307)
                      ..+.|.+.++.+.++++ .+ +.++|.|. ....+|.+ ++.+-+...+.+++|.                    ..|||
T Consensus        80 ~~syt~~tl~~l~~~~p~~~~~~iiG~D~~~~l~~W~~-~~~l~~~~~~iv~~R~g~~~~~~~~~~~i~~~~~~~~~iSS  158 (342)
T PRK07152         80 NVSYTIDTIKYFKKKYPNDEIYFIIGSDNLEKFKKWKN-IEEILKKVQIVVFKRKKNINKKNLKKYNVLLLKNKNLNISS  158 (342)
T ss_pred             CCCcHHHHHHHHHHhCCCCcEEEEecHHHhhhcccccC-HHHHHHhCCEEEEECCCCCcccccccCcEEEecCCccccCH
Confidence            12335566766655552 22 78889885 34557875 4445555567777662                    24999


Q ss_pred             HHHHHHHHhh
Q 021802          180 TDIVGRMLLC  189 (307)
Q Consensus       180 T~Ir~rIl~~  189 (307)
                      |+||+++...
T Consensus       159 T~IR~~~~~~  168 (342)
T PRK07152        159 TKIRKGNLLG  168 (342)
T ss_pred             HHHHHHHHcC
Confidence            9999998753

>COG0669 CoaD Phosphopantetheine adenylyltransferase [Coenzyme metabolism]

Probab=99.19  E-value=1.1e-10  Score=101.04  Aligned_cols=87  Identities=22%  Similarity=0.390  Sum_probs=70.5

Q ss_pred             eEEEEecccCcCCHHHHHHHHHHHHcCCeEEEEEeCChhhhhcCCCCCCCHHHHHHHHHH-ccCccEEEEcCCCcccHHH
Q 021802           52 VRVYMDGCFDMMHYGHCNALRQARALGDQLVVGVVSDAEIIANKGPPVTPLHERMIMVNA-VKWVDEVISDAPYAITKDF  130 (307)
Q Consensus        52 ~~V~~~G~FD~lH~GH~~lL~qAk~~gd~LiVgV~sD~~i~~~Kg~pi~s~eER~~ll~~-~k~VD~Vv~~~py~~t~df  130 (307)
                      +++++.|+||+++.||+.++++|.++.|+++|+|..+|    .| +|.+|.+||.++++. .+..+.|-. ..|+   ..
T Consensus         3 ~iavypGSFDPiTnGHlDii~RA~~~Fd~viVaV~~np----~K-~plFsleER~~l~~~~~~~l~nV~V-~~f~---~L   73 (159)
T COG0669           3 KIAVYPGSFDPITNGHLDIIKRASALFDEVIVAVAINP----SK-KPLFSLEERVELIREATKHLPNVEV-VGFS---GL   73 (159)
T ss_pred             eeEEeCCCCCCCccchHHHHHHHHHhccEEEEEEEeCC----Cc-CCCcCHHHHHHHHHHHhcCCCceEE-Eecc---cH
Confidence            57899999999999999999999999999999998886    35 699999999999988 345566644 3343   23


Q ss_pred             HHHHHHhcCccEEEEcC
Q 021802          131 MKKLFDEYNIDYIIHGD  147 (307)
Q Consensus       131 le~ll~~l~~d~VV~Gd  147 (307)
                      +-+..++.++.++|-|-
T Consensus        74 lvd~ak~~~a~~ivRGL   90 (159)
T COG0669          74 LVDYAKKLGATVLVRGL   90 (159)
T ss_pred             HHHHHHHcCCCEEEEec
Confidence            33344678999999994

>COG1019 Predicted nucleotidyltransferase [General function prediction only]

Probab=99.15  E-value=1.9e-10  Score=98.93  Aligned_cols=127  Identities=26%  Similarity=0.348  Sum_probs=87.9

Q ss_pred             CCeEEEEecccCcCCHHHHHHHHHHHHcCCeEEEEEeCChhhhhcCCCCCCCHHHHHHHHHH----ccC-cc-EEEEcCC
Q 021802           50 KPVRVYMDGCFDMMHYGHCNALRQARALGDQLVVGVVSDAEIIANKGPPVTPLHERMIMVNA----VKW-VD-EVISDAP  123 (307)
Q Consensus        50 ~~~~V~~~G~FD~lH~GH~~lL~qAk~~gd~LiVgV~sD~~i~~~Kg~pi~s~eER~~ll~~----~k~-VD-~Vv~~~p  123 (307)
                      +-..|.+.|+||.+|.||..||+.|...|+.+++|+++|+.+...|...+-|.+.|++-+..    ++. -+ .+-++.|
T Consensus         4 kfm~vavGGTFd~LH~GHk~LL~~A~~~G~~v~IGlTsDe~~k~~k~~~i~p~~~R~~~l~~fl~~~~~~~~~iv~i~Dp   83 (158)
T COG1019           4 KFMKVAVGGTFDRLHDGHKKLLEVAFEIGDRVTIGLTSDELAKKKKKEKIEPYEVRLRNLRNFLESIKADYEEIVPIDDP   83 (158)
T ss_pred             cceEEEecccchhhhhhHHHHHHHHHHhCCeEEEEEccHHHHHHhccccCCcHHHHHHHHHHHHHHhcCCcceEEEecCC
Confidence            44569999999999999999999999999999999999998776566899999999997766    211 12 3344678


Q ss_pred             CcccHHHHHHHHHhcCccEEEEcCCCCcCCCCCchHHHHHhCC----EEEEcCC-----CCCCCHHHHHHH
Q 021802          124 YAITKDFMKKLFDEYNIDYIIHGDDPCVLPDGTDAYELAKKAG----RYKQIKR-----TEGVSSTDIVGR  185 (307)
Q Consensus       124 y~~t~dfle~ll~~l~~d~VV~GdD~~fg~~g~d~y~~lk~~g----~v~vv~r-----t~~VSST~Ir~r  185 (307)
                      |.++.+       .-..+++|+...-.-++  ...-+.-.+.|    .+.+++.     ...+|||+||.-
T Consensus        84 ~G~t~~-------~~~~e~iVVS~ET~~~A--l~IN~~R~~~Gl~pL~I~~i~~v~aedg~~iSSTrIrrg  145 (158)
T COG1019          84 YGPTVE-------DPDFEAIVVSPETYPGA--LKINEIREKRGLPPLEIIVIDYVLAEDGKPISSTRIRRG  145 (158)
T ss_pred             CCCCCC-------cCceeEEEEccccchhH--HHHHHHHHHCCCCCeEEEEEehhhhhcCCccchhhhhhh
Confidence            765432       12468999886533221  11111222233    3555554     246999999843

>PRK13670 hypothetical protein; Provisional

Probab=99.12  E-value=2.9e-10  Score=112.00  Aligned_cols=92  Identities=22%  Similarity=0.341  Sum_probs=72.9

Q ss_pred             EEEecccCcCCHHHHHHHHHHHHcCC-eEEEEEeCChhhhhcCCCCCCCHHHHHHHHHHccCccEEEEcCCCcc----cH
Q 021802           54 VYMDGCFDMMHYGHCNALRQARALGD-QLVVGVVSDAEIIANKGPPVTPLHERMIMVNAVKWVDEVISDAPYAI----TK  128 (307)
Q Consensus        54 V~~~G~FD~lH~GH~~lL~qAk~~gd-~LiVgV~sD~~i~~~Kg~pi~s~eER~~ll~~~k~VD~Vv~~~py~~----t~  128 (307)
                      +=++==|||+|.||+.+|++|++.+. .++++|-|...+.+ ..+.+++.++|.+++..+ |||.|++ .||++    .+
T Consensus         4 ~GIIaEfdg~H~GH~~~i~~a~~~a~~~~~~~Vmp~~f~qr-g~p~i~~~~~R~~~a~~~-GvD~vie-lpf~~a~~sae   80 (388)
T PRK13670          4 TGIIVEYNPFHNGHLYHLNQAKKLTNADVTIAVMSGNFVQR-GEPAIVDKWTRAKMALEN-GVDLVVE-LPFLYSVQSAD   80 (388)
T ss_pred             eEEEeeeCCcCHHHHHHHHHHHHHHhCCCcEEEecHHHhCC-CCCCCCCHHHHHHHHHHc-CCCEEEE-eCCchHhCCHH
Confidence            34455699999999999999998753 34444445444433 226799999999999998 9999999 89874    36


Q ss_pred             HHHHH---HHHhcCccEEEEcCC
Q 021802          129 DFMKK---LFDEYNIDYIIHGDD  148 (307)
Q Consensus       129 dfle~---ll~~l~~d~VV~GdD  148 (307)
                      +|++.   ++++++++.||+|.|
T Consensus        81 ~F~~~aV~iL~~l~v~~lv~G~e  103 (388)
T PRK13670         81 FFAEGAVSILDALGVDSLVFGSE  103 (388)
T ss_pred             HHHHhHHHHHHHcCCCEEEEcCC
Confidence            79886   778899999999999

>PRK08099 bifunctional DNA-binding transcriptional repressor/ NMN adenylyltransferase; Provisional

Probab=99.09  E-value=1.2e-09  Score=108.05  Aligned_cols=132  Identities=16%  Similarity=0.149  Sum_probs=86.1

Q ss_pred             CCeEEEEecccCcCCHHHHHHHHHHHHcCCeEEEEEeCChh-----hhhcCCCCCCCHHHHHHHHHHc-cCccEEEE---
Q 021802           50 KPVRVYMDGCFDMMHYGHCNALRQARALGDQLVVGVVSDAE-----IIANKGPPVTPLHERMIMVNAV-KWVDEVIS---  120 (307)
Q Consensus        50 ~~~~V~~~G~FD~lH~GH~~lL~qAk~~gd~LiVgV~sD~~-----i~~~Kg~pi~s~eER~~ll~~~-k~VD~Vv~---  120 (307)
                      +..+++++|.|||+|.||+.+|++|.+++|+|+|+|.+++.     +...|....+|.++|.++++.. +..+.|.+   
T Consensus        51 ~~~~~v~~G~FdP~H~GH~~lI~~A~~~~d~l~v~v~~~~~~~~~~~~~~~~~~~~s~~~R~~~l~~~~~~~~~v~v~~~  130 (399)
T PRK08099         51 MKKIGVVFGKFYPLHTGHIYLIQRACSQVDELHIIICYDDERDRKLFEDSAMSQQPTVSDRLRWLLQTFKYQKNIKIHAF  130 (399)
T ss_pred             cCcEEEEEEecCCCCHHHHHHHHHHHHHCCeeEEEEEccCCcchhhcccccccCCCCHHHHHHHHHHHhCCCCCEEEEec
Confidence            34479999999999999999999999999999988877642     1111225688999999999984 44333422   


Q ss_pred             ---cCC-Ccc-cHHHH---HHHHHh--cCccEEEEcCCCCcCCCCCchHHHHHh-CCEEEEcCC---CCCCCHHHHHHHH
Q 021802          121 ---DAP-YAI-TKDFM---KKLFDE--YNIDYIIHGDDPCVLPDGTDAYELAKK-AGRYKQIKR---TEGVSSTDIVGRM  186 (307)
Q Consensus       121 ---~~p-y~~-t~dfl---e~ll~~--l~~d~VV~GdD~~fg~~g~d~y~~lk~-~g~v~vv~r---t~~VSST~Ir~rI  186 (307)
                         +.| |.. ...|.   ...+..  .++++++.|+++.     .+.|  ++. +.++..++.   ...||+|.||+.-
T Consensus       131 ~~~~~~~~~~~~~~w~~~v~~~v~~~~~~~~~vf~~~~~d-----~~~~--~~~~~~~~~~vd~~r~~~~iSaT~IR~~p  203 (399)
T PRK08099        131 NEEGMEPYPHGWDVWSNGIKAFMAEKGIQPDVIYTSEEQD-----APQY--EEHLGIETVLVDPKRTFMNISGTQIRENP  203 (399)
T ss_pred             CCCCCCCCCccHHHHHHHHHHHHHhcCCCCCEEEEeCCCC-----hHHH--HHhcCCceeeeccccccCCcCHHHHhhCH
Confidence               112 111 12233   333332  2688999997642     2344  333 334555554   3579999999876


Q ss_pred             Hh
Q 021802          187 LL  188 (307)
Q Consensus       187 l~  188 (307)
                      ..
T Consensus       204 ~~  205 (399)
T PRK08099        204 FR  205 (399)
T ss_pred             HH
Confidence            54

>cd09286 NMNAT_Eukarya Nicotinamide/nicotinate mononucleotide adenylyltransferase, Eukaryotic

Probab=98.99  E-value=3.4e-09  Score=97.19  Aligned_cols=81  Identities=23%  Similarity=0.251  Sum_probs=52.7

Q ss_pred             EEEecccCcCCHHHHHHHHHHHHcC--Ce-E-EE-E---EeCChhhhhcCCCCCCCHHHHHHHHHH-ccCccEEEEcCCC
Q 021802           54 VYMDGCFDMMHYGHCNALRQARALG--DQ-L-VV-G---VVSDAEIIANKGPPVTPLHERMIMVNA-VKWVDEVISDAPY  124 (307)
Q Consensus        54 V~~~G~FD~lH~GH~~lL~qAk~~g--d~-L-iV-g---V~sD~~i~~~Kg~pi~s~eER~~ll~~-~k~VD~Vv~~~py  124 (307)
                      .++.|+||++|.||+.++++|.+..  +. + ++ +   ...++   ..| ....+.++|++|++- +...+.+.+ .+|
T Consensus         3 ~~~gGSFdPiH~gHl~ia~~a~~~l~~~~~~~~v~~~~~P~~~~---~~k-~~~~~~~~Rl~Ml~lai~~~~~~~v-~~~   77 (225)
T cd09286           3 LLACGSFNPITNMHLRMFELARDHLHETGRYEVVGGIISPVNDA---YGK-KGLASAKHRVAMCRLAVQSSDWIRV-DDW   77 (225)
T ss_pred             EEeCcCcCCCcHHHHHHHHHHHHHHHhhcCceeEEEEEEeeccC---CCC-CCCCCHHHHHHHHHHHHccCCCEEE-Eeh
Confidence            6788999999999999999998765  32 1 22 1   12222   123 567799999999984 555554444 222


Q ss_pred             -------cccHHHHHHHHHhcC
Q 021802          125 -------AITKDFMKKLFDEYN  139 (307)
Q Consensus       125 -------~~t~dfle~ll~~l~  139 (307)
                             ..|-+.++.+.+++.
T Consensus        78 E~~~~~~syT~~TL~~l~~~~p   99 (225)
T cd09286          78 ESLQPEWMRTAKVLRHHREEIN   99 (225)
T ss_pred             hccCCccccHHHHHHHHHHHhc
Confidence                   235567766655553

Nicotinamide/nicotinate mononucleotide (NMN/ NaMN)adenylyltransferase (NMNAT). NMNAT represents the primary bacterial and eukaryotic adenylyltransferases for nicotinamide-nucleotide and for the deamido form, nicotinate nucleotide. It is an indispensable enzyme in the biosynthesis of NAD(+) and NADP(+). Nicotinamide-nucleotide adenylyltransferase synthesizes NAD via the salvage pathway, while nicotinate-nucleotide adenylyltransferase synthesizes the immediate precursor of NAD via the de novo pathway. Human NMNAT displays unique dual substrate specificity toward both NMN and NaMN, and can participate in both de novo and salvage pathways of NAD synthesis. This subfamily consists strictly of eukaryotic members and includes secondary structural elements not found in all NMNATs.

>PRK13793 nicotinamide-nucleotide adenylyltransferase; Provisional

Probab=98.98  E-value=3e-09  Score=95.77  Aligned_cols=58  Identities=16%  Similarity=0.076  Sum_probs=49.8

Q ss_pred             EEEEecccCcCCHHHHHHHHHHHHcCCeEEEEEeCChhhhhcCCCCCCCHHHHHHHHHHc
Q 021802           53 RVYMDGCFDMMHYGHCNALRQARALGDQLVVGVVSDAEIIANKGPPVTPLHERMIMVNAV  112 (307)
Q Consensus        53 ~V~~~G~FD~lH~GH~~lL~qAk~~gd~LiVgV~sD~~i~~~Kg~pi~s~eER~~ll~~~  112 (307)
                      ..+++|.|.++|.||+++|++|.+.+|+|||++.|.......  +..+|..||.+|++..
T Consensus         6 ~~v~iGRFQPfH~GHl~~I~~al~~~devII~IGSA~~s~t~--~NPFTa~ER~~MI~~a   63 (196)
T PRK13793          6 YLVFIGRFQPFHLAHMQTIEIALQQSRYVILALGSAQMERNI--KNPFLAIEREQMILSN   63 (196)
T ss_pred             EEEEEecCCCCcHHHHHHHHHHHHhCCEEEEEEccCCCCCCC--CCCCCHHHHHHHHHHh
Confidence            589999999999999999999999999999999995432211  4678999999999984

>PRK00777 phosphopantetheine adenylyltransferase; Provisional

Probab=98.96  E-value=7.7e-10  Score=95.92  Aligned_cols=44  Identities=30%  Similarity=0.517  Sum_probs=40.2

Q ss_pred             eEEEEeCcccccCHHHHHHHHHHHhCCCEEEEEEeCcccccccC
Q 021802          250 RIIYIDGAFDLFHAGHVEILRIARGLGDFLLVGIHNDQTVRLKN  293 (307)
Q Consensus       250 ~~v~~~G~FDl~H~GHi~~L~~a~~~g~~liVgv~~D~~v~~~~  293 (307)
                      +.|++.|+||++|.||+.+|++|+++||+|+|||++|+.++.+|
T Consensus         2 ~~v~~gGtFDplH~GH~~ll~~A~~~~d~livgi~~d~~~~~~K   45 (153)
T PRK00777          2 MKVAVGGTFDPLHDGHRALLRKAFELGKRVTIGLTSDEFAKSYK   45 (153)
T ss_pred             cEEEEecccCCCCHHHHHHHHHHHHcCCEEEEEEcCCccccccC
Confidence            46899999999999999999999999999999999998886544

>cd00560 PanC Pantoate-beta-alanine ligase

Probab=98.93  E-value=3.3e-09  Score=100.23  Aligned_cols=116  Identities=17%  Similarity=0.234  Sum_probs=86.6

Q ss_pred             hhcCCC-CeEEEEecccCcCCHHHHHHHHHHHHcCCeEEEEEeCChhhhhc-CC--CCCCCHHHHHHHHHHccCccEEEE
Q 021802           45 TRKKKK-PVRVYMDGCFDMMHYGHCNALRQARALGDQLVVGVVSDAEIIAN-KG--PPVTPLHERMIMVNAVKWVDEVIS  120 (307)
Q Consensus        45 ~~~~~~-~~~V~~~G~FD~lH~GH~~lL~qAk~~gd~LiVgV~sD~~i~~~-Kg--~pi~s~eER~~ll~~~k~VD~Vv~  120 (307)
                      ++..++ -..|.++|+   +|.||+.++++|++.++.++|.+..+|.-... ..  ..+.+.++|.++++++ +||.++.
T Consensus        17 ~~~~~~~ig~V~TmG~---LH~GH~~LI~~a~~~a~~vVvtf~~nP~qf~~~ed~~~y~~t~e~d~~ll~~~-GvD~vF~   92 (277)
T cd00560          17 WRAQGKTIGFVPTMGA---LHEGHLSLVRRARAENDVVVVSIFVNPLQFGPNEDLDRYPRTLEADLALLEEA-GVDLLFA   92 (277)
T ss_pred             HHHcCCeEEEEECCCc---ccHHHHHHHHHHHHhCCEEEEEecCChhhcCCcccccccCCCHHHHHHHHHHC-CCCEEEC
Confidence            333343 335789999   99999999999999999899999888753221 22  4588899999999998 9999854


Q ss_pred             cCCCc--ccHHHHHHHHHhcCccEEEEcC----------------------C-CCcCCCCCchHHHHHhC
Q 021802          121 DAPYA--ITKDFMKKLFDEYNIDYIIHGD----------------------D-PCVLPDGTDAYELAKKA  165 (307)
Q Consensus       121 ~~py~--~t~dfle~ll~~l~~d~VV~Gd----------------------D-~~fg~~g~d~y~~lk~~  165 (307)
                       ..+.  .+++|++.+.+..++..+++|.                      | ++||.++.+....+++.
T Consensus        93 -p~~~~m~p~~f~~~~v~~~~~~~il~G~~RpghF~GV~tvv~kLf~iv~Pd~~~FG~kd~gq~~~Lk~~  161 (277)
T cd00560          93 -PSVEEMYPEGLFSTFVDVGPLSEVLEGASRPGHFRGVATVVAKLFNLVQPDRAYFGEKDAQQLAVIRRM  161 (277)
T ss_pred             -CCHHHcCCCCCceEEEecCCCceEEecCCCCccccceeeeehhhhcccCCCeEEECCCccccHHHHHHH
Confidence             2221  2345554344557899999999                      9 89999888777777764

PanC Pantoate-beta-alanine ligase, also known as pantothenate synthase, catalyzes the formation of pantothenate from pantoate and alanine. PanC belongs to a large superfamily of nucleotidyltransferases that includes , ATP sulfurylase (ATPS), phosphopantetheine adenylyltransferase (PPAT), and the amino-acyl tRNA synthetases. The enzymes of this family are structurally similar and share a dinucleotide-binding domain.

>TIGR02199 rfaE_dom_II rfaE bifunctional protein, domain II

Probab=98.92  E-value=1.1e-09  Score=93.68  Aligned_cols=47  Identities=43%  Similarity=0.815  Sum_probs=42.5

Q ss_pred             CCeEEEEeCcccccCHHHHHHHHHHHhCCCEEEEEEeCcccccccCC
Q 021802          248 DARIIYIDGAFDLFHAGHVEILRIARGLGDFLLVGIHNDQTVRLKNP  294 (307)
Q Consensus       248 ~~~~v~~~G~FDl~H~GHi~~L~~a~~~g~~liVgv~~D~~v~~~~~  294 (307)
                      ++++|++.|+||.+|.||+++|++|++.|++++||++.|+...+.++
T Consensus        10 ~~~~v~~~G~FDgvH~GH~~ll~~a~~~~~~~~v~v~~d~~~~~~k~   56 (144)
T TIGR02199        10 GKKIVFTNGCFDILHAGHVSYLQQARALGDRLVVGVNSDASVKRLKG   56 (144)
T ss_pred             CCCEEEEeCcccccCHHHHHHHHHHHHhCCccEEEEECCcCHHHhCC
Confidence            46899999999999999999999999999999999999998765443

RfaE is a protein involved in the biosynthesis of ADP-L-glycero-D-manno-heptose, a precursor for LPS inner core biosynthesis. RfaE is a bifunctional protein in E. coli, and separate proteins in some other genome. Domain I (TIGR02198) is suggested to act in D-glycero-D-manno-heptose 1-phosphate biosynthesis, while domain II (this family) adds ADP to yield ADP-D-glycero-D-manno-heptose.

>TIGR00125 cyt_tran_rel cytidyltransferase-related domain

Probab=98.92  E-value=1.3e-09  Score=80.12  Aligned_cols=44  Identities=39%  Similarity=0.572  Sum_probs=40.0

Q ss_pred             EEEEeCcccccCHHHHHHHHHHHhCCCEEEEEEeCcccccccCC
Q 021802          251 IIYIDGAFDLFHAGHVEILRIARGLGDFLLVGIHNDQTVRLKNP  294 (307)
Q Consensus       251 ~v~~~G~FDl~H~GHi~~L~~a~~~g~~liVgv~~D~~v~~~~~  294 (307)
                      ++++.|+||++|.||+.++++|++.++.++|++.+|+..+..++
T Consensus         1 i~~~~G~Fdp~H~GH~~~l~~a~~~~~~~vv~i~~~~~~~~~~~   44 (66)
T TIGR00125         1 RVIFVGTFDPFHLGHLDLLERAKELFDELIVGVGSDQFVNPLKG   44 (66)
T ss_pred             CEEEcCccCCCCHHHHHHHHHHHHhCCEEEEEECchHhccccCC
Confidence            57899999999999999999999999999999999988776554

Protein families that contain at least one copy of this domain include citrate lyase ligase, pantoate-beta-alanine ligase, glycerol-3-phosphate cytidyltransferase, ADP-heptose synthase, phosphocholine cytidylyltransferase, lipopolysaccharide core biosynthesis protein KdtB, the bifunctional protein NadR, and a number whose function is unknown. Many of these proteins are known to use CTP or ATP and release pyrophosphate.

>cd02170 cytidylyltransferase cytidylyltransferase

Probab=98.91  E-value=1.4e-09  Score=91.41  Aligned_cols=45  Identities=40%  Similarity=0.809  Sum_probs=40.8

Q ss_pred             CeEEEEeCcccccCHHHHHHHHHHHhCCCEEEEEEeCcccccccC
Q 021802          249 ARIIYIDGAFDLFHAGHVEILRIARGLGDFLLVGIHNDQTVRLKN  293 (307)
Q Consensus       249 ~~~v~~~G~FDl~H~GHi~~L~~a~~~g~~liVgv~~D~~v~~~~  293 (307)
                      .+++++.|+||+||.||+.+|++|++.+++++||++.|+.++..+
T Consensus         1 ~~~v~~~G~FD~~H~GH~~ll~~a~~~~~~l~v~v~~~~~~~~~~   45 (136)
T cd02170           1 MKRVYAAGTFDIIHPGHIRFLEEAKKLGDYLIVGVARDETVAKIK   45 (136)
T ss_pred             CeEEEEcCccCCCCHHHHHHHHHHHHhCCEEEEEECCcHHHHhcC
Confidence            378999999999999999999999999999999999998775543

The cytidylyltransferase family includes cholinephosphate cytidylyltransferase (CCT), glycerol-3-phosphate cytidylyltransferase, RafE and phosphoethanolamine cytidylyltransferase (ECT). All enzymes catalyze the transfer of a cytidylyl group from CTP to various substrates.

>PRK11316 bifunctional heptose 7-phosphate kinase/heptose 1-phosphate adenyltransferase; Provisional

Probab=98.90  E-value=1.2e-09  Score=109.12  Aligned_cols=49  Identities=39%  Similarity=0.678  Sum_probs=44.6

Q ss_pred             CCCeEEEEeCcccccCHHHHHHHHHHHhCCCEEEEEEeCcccccccCCC
Q 021802          247 PDARIIYIDGAFDLFHAGHVEILRIARGLGDFLLVGIHNDQTVRLKNPS  295 (307)
Q Consensus       247 ~~~~~v~~~G~FDl~H~GHi~~L~~a~~~g~~liVgv~~D~~v~~~~~~  295 (307)
                      .++++||+.|+||++|.||+++|++|+++|++|+|||++|+.++++|+.
T Consensus       338 ~~~~iv~~~G~fD~~H~GH~~~l~~a~~~~~~l~v~v~~d~~~~~~k~~  386 (473)
T PRK11316        338 RGEKIVMTNGCFDILHAGHVSYLANARKLGDRLIVAVNSDASVKRLKGE  386 (473)
T ss_pred             cCCeEEEEecccccCCHHHHHHHHHHHHhCCeeEEEEeCchhHHHhCCC
Confidence            4579999999999999999999999999999999999999998765553

>PRK13671 hypothetical protein; Provisional

Probab=98.88  E-value=9.9e-09  Score=97.87  Aligned_cols=90  Identities=21%  Similarity=0.361  Sum_probs=72.5

Q ss_pred             EEecccCcCCHHHHHHHHHHHHc--CCeEEEEEeCChhhhhcCC-CCCCCHHHHHHHHHHccCccEEEEcCCCcc----c
Q 021802           55 YMDGCFDMMHYGHCNALRQARAL--GDQLVVGVVSDAEIIANKG-PPVTPLHERMIMVNAVKWVDEVISDAPYAI----T  127 (307)
Q Consensus        55 ~~~G~FD~lH~GH~~lL~qAk~~--gd~LiVgV~sD~~i~~~Kg-~pi~s~eER~~ll~~~k~VD~Vv~~~py~~----t  127 (307)
                      =++=.|||+|.||..++++|++.  +|.+++.+..++   ..|+ +.+++.++|++|++.+ |||-|++ .|+.+    .
T Consensus         4 GIIaeFNP~H~GHl~~~~~a~~~~~~d~vi~vpSg~~---~qrg~pa~~~~~~R~~ma~~~-G~DLViE-LP~~~a~~sA   78 (298)
T PRK13671          4 GIIAEYNPFHNGHIYQINYIKNKFPNEKIIVILSGKY---TQRGEIAVASFEKRKKIALKY-GVDKVIK-LPFEYATQAA   78 (298)
T ss_pred             eEEeeeCCccHHHHHHHHHHHHhcCCCEEEEEECcCC---CCCCCCCCCCHHHHHHHHHHc-CCCEEEe-ccHHHHhhch
Confidence            34567999999999999999997  488888777676   3566 6777999999999999 9999999 88643    2


Q ss_pred             HHHHH---HHHHhcCccEEEEcCCC
Q 021802          128 KDFMK---KLFDEYNIDYIIHGDDP  149 (307)
Q Consensus       128 ~dfle---~ll~~l~~d~VV~GdD~  149 (307)
                      +.|..   .+++.+++|.++.|.+.
T Consensus        79 e~FA~gaV~lL~~lgvd~l~FGsE~  103 (298)
T PRK13671         79 HIFAKGAIKKLNKEKIDKLIFGSES  103 (298)
T ss_pred             HHHHHHHHHHHHHcCCCEEEECCCC
Confidence            44542   37788999999988763

>PLN02945 nicotinamide-nucleotide adenylyltransferase/nicotinate-nucleotide adenylyltransferase

Probab=98.85  E-value=4.8e-08  Score=90.15  Aligned_cols=97  Identities=19%  Similarity=0.233  Sum_probs=59.3

Q ss_pred             eEEEEecccCcCCHHHHHHHHHHHHcC--CeE-EEEEeCChh-hhhcCCCCCCCHHHHHHHHHH-ccCccEEEE------
Q 021802           52 VRVYMDGCFDMMHYGHCNALRQARALG--DQL-VVGVVSDAE-IIANKGPPVTPLHERMIMVNA-VKWVDEVIS------  120 (307)
Q Consensus        52 ~~V~~~G~FD~lH~GH~~lL~qAk~~g--d~L-iVgV~sD~~-i~~~Kg~pi~s~eER~~ll~~-~k~VD~Vv~------  120 (307)
                      ...+..|+||++|.||+.+++.|++..  +.+ +|++...|. ....| +...+.++|++|++. +..-+.+.+      
T Consensus        23 ~v~i~GGSFdP~H~gHl~ia~~a~~~l~~d~~~~v~~~~~P~~~~~~k-~~~~~~~~Rl~Ml~lai~~~~~~~V~~~E~~  101 (236)
T PLN02945         23 VVLVATGSFNPPTYMHLRMFELARDALMSEGYHVLGGYMSPVNDAYKK-KGLASAEHRIQMCQLACEDSDFIMVDPWEAR  101 (236)
T ss_pred             EEEEEcCCCCCCcHHHHHHHHHHHHHHhhcCcEEEEEEECCCCccccc-CCCCCHHHHHHHHHHHhcCCCCeEecHHHhC
Confidence            345777899999999999999988763  432 332222221 11122 356799999999974 544443333      


Q ss_pred             cCCCcccHHHHHHHHHhcC---------cc-EEEEcCCC
Q 021802          121 DAPYAITKDFMKKLFDEYN---------ID-YIIHGDDP  149 (307)
Q Consensus       121 ~~py~~t~dfle~ll~~l~---------~d-~VV~GdD~  149 (307)
                      ...++.|.+.++.+.++++         ++ +.++|.|-
T Consensus       102 ~~~~syT~dtL~~l~~~~~~~~~~~~~~~~~~fiiG~D~  140 (236)
T PLN02945        102 QSTYQRTLTVLARVETSLNNNGLASEESVRVMLLCGSDL  140 (236)
T ss_pred             CCCCccHHHHHHHHHHHhccccccCCCCceEEEEechhH
Confidence            1112335667766655552         23 78889984

>TIGR01518 g3p_cytidyltrns glycerol-3-phosphate cytidylyltransferase

Probab=98.85  E-value=2.5e-09  Score=88.99  Aligned_cols=40  Identities=38%  Similarity=0.708  Sum_probs=36.9

Q ss_pred             EEEeCcccccCHHHHHHHHHHHhCCCEEEEEEeCcccccc
Q 021802          252 IYIDGAFDLFHAGHVEILRIARGLGDFLLVGIHNDQTVRL  291 (307)
Q Consensus       252 v~~~G~FDl~H~GHi~~L~~a~~~g~~liVgv~~D~~v~~  291 (307)
                      |++.|+||++|.||+++|++|+++|++++||+++|+....
T Consensus         1 v~~~G~FDg~H~GH~~~l~~a~~~~~~~iv~v~~d~~~~~   40 (125)
T TIGR01518         1 VLTYGTFDLLHWGHINLLERAKQLGDYLIVALSTDEFNLQ   40 (125)
T ss_pred             CEEcceeCCCCHHHHHHHHHHHHcCCEEEEEEechHHHhh
Confidence            5789999999999999999999999999999999986643

Glycerol-3-phosphate cytidyltransferase acts in pathways of teichoic acid biosynthesis. Teichoic acids are substituted polymers, linked by phosphodiester bonds, of glycerol, ribitol, etc. An example is poly(glycerol phosphate), the major teichoic acid of the Bacillus subtilis cell wall. Most but not all species encoding proteins in this family are Gram-positive bacteria.

>cd02156 nt_trans nucleotidyl transferase superfamily

Probab=98.82  E-value=6e-09  Score=84.00  Aligned_cols=57  Identities=21%  Similarity=0.279  Sum_probs=49.7

Q ss_pred             EEEecccCcCCHHHHHHHHHHHHcCCeEEEEEeCChhhhhcCCCCCCCHHHHHHHHHHc
Q 021802           54 VYMDGCFDMMHYGHCNALRQARALGDQLVVGVVSDAEIIANKGPPVTPLHERMIMVNAV  112 (307)
Q Consensus        54 V~~~G~FD~lH~GH~~lL~qAk~~gd~LiVgV~sD~~i~~~Kg~pi~s~eER~~ll~~~  112 (307)
                      +++.|.||++|.||+.++++|+++++.+++++..++.... + .++.+.++|.++++++
T Consensus         2 ~~~~G~Fdp~H~GH~~l~~~a~~~~d~~i~~i~~~~~~~~-~-~~~~~~~~R~~~l~~~   58 (105)
T cd02156           2 ARFPGEPGYLHIGHAKLICRAKGIADQCVVRIDDNPPVKV-W-QDPHELEERKESIEED   58 (105)
T ss_pred             EEeCCCCCCCCHHHHHHHHHHHHhCCcEEEEEcCCCcccc-c-CChHHHHHHHHHHHHH
Confidence            7899999999999999999999999999999988775422 1 3689999999999986

nt_trans (nucleotidyl transferase) This superfamily includes the class I amino-acyl tRNA synthetases, pantothenate synthetase (PanC), ATP sulfurylase, and the cytidylyltransferases, all of which have a conserved dinucleotide-binding domain.

>cd02172 RfaE_N N-terminal domain of RfaE

Probab=98.82  E-value=6.1e-09  Score=89.20  Aligned_cols=45  Identities=40%  Similarity=0.713  Sum_probs=41.3

Q ss_pred             CCeEEEEeCcccccCHHHHHHHHHHHhCCCEEEEEEeCccccccc
Q 021802          248 DARIIYIDGAFDLFHAGHVEILRIARGLGDFLLVGIHNDQTVRLK  292 (307)
Q Consensus       248 ~~~~v~~~G~FDl~H~GHi~~L~~a~~~g~~liVgv~~D~~v~~~  292 (307)
                      ++++|++.|+||++|.||.++|++|++.++.++|++++|+.++..
T Consensus         3 ~~~~vv~~G~FDgvH~GH~~ll~~a~~~~~~~vv~~~~d~~~~~~   47 (144)
T cd02172           3 GKTVVLCHGVFDLLHPGHVRHLQAARSLGDILVVSLTSDRYVNKG   47 (144)
T ss_pred             CCEEEEEecccCCCCHHHHHHHHHHHHhCCeEEEEEeChHHhccC
Confidence            468899999999999999999999999999999999999877653

RfaE is a protein involved in the biosynthesis of ADP-L-glycero-D-manno-heptose, a precursor for LPS inner core biosynthesis. RfaE is a bifunctional protein in Escherichia coli, and separate proteins in other organisms. Domain I is suggested to act in D-glycero-D-manno-heptose 1-phosphate biosynthesis, while domain II (this family) adds ADP to yield ADP-D-glycero-D-manno-heptose .

>PRK00380 panC pantoate--beta-alanine ligase; Reviewed

Probab=98.80  E-value=8.6e-09  Score=97.62  Aligned_cols=107  Identities=18%  Similarity=0.224  Sum_probs=79.3

Q ss_pred             EEEEecccCcCCHHHHHHHHHHHHcCCeEEEEEeCChhhhhc-CC--CCCCCHHHHHHHHHHccCccEEEEcCCCc--cc
Q 021802           53 RVYMDGCFDMMHYGHCNALRQARALGDQLVVGVVSDAEIIAN-KG--PPVTPLHERMIMVNAVKWVDEVISDAPYA--IT  127 (307)
Q Consensus        53 ~V~~~G~FD~lH~GH~~lL~qAk~~gd~LiVgV~sD~~i~~~-Kg--~pi~s~eER~~ll~~~k~VD~Vv~~~py~--~t  127 (307)
                      -|.++|+   +|.||+.+|++|++.++.+++.+.++|.-... ..  +.++|.++|.++++++ +||.++. ..+.  .+
T Consensus        26 ~v~tmG~---lH~GH~~Li~~a~~~a~~vVvTf~~~P~qf~~~~~~~~~~~t~e~~~~ll~~~-GvD~v~~-p~~~~myp  100 (281)
T PRK00380         26 LVPTMGA---LHEGHLSLVREARAEADIVVVSIFVNPLQFGPNEDLDRYPRTLEADLALLEAA-GVDLVFA-PSVEEMYP  100 (281)
T ss_pred             EEEccCc---eeHHHHHHHHHHHHhCCEEEEeCCCCHHHhCCCccccccCCCHHHHHHHHHHc-CCCEEEe-CCHHHCCC
Confidence            3567787   99999999999999998888888888753222 22  4688999999999998 9999987 2221  13


Q ss_pred             HHHHHHHHHhcCccEEEEcC----------------------CC-CcCCCCCchHHHHHhC
Q 021802          128 KDFMKKLFDEYNIDYIIHGD----------------------DP-CVLPDGTDAYELAKKA  165 (307)
Q Consensus       128 ~dfle~ll~~l~~d~VV~Gd----------------------D~-~fg~~g~d~y~~lk~~  165 (307)
                      ++|...+.. -++..+++|.                      |+ .||.+.......+++.
T Consensus       101 ~~f~~~i~~-~~~~~vl~G~~RpghF~Gv~tvv~kLf~iv~Pd~a~FG~kd~qq~~~l~~~  160 (281)
T PRK00380        101 QGLQTYVSV-PGLSDVLEGASRPGHFRGVATVVTKLFNIVQPDVAYFGEKDYQQLAVIRRM  160 (281)
T ss_pred             ccceeEEEc-ccccccccCCCCCccccchhhHHHHHhhccCCCeeEECCCcchhHHHHHHH
Confidence            456544322 1378999999                      99 8998877666677654

>TIGR00124 cit_ly_ligase [citrate (pro-3S)-lyase] ligase

Probab=98.79  E-value=8.3e-08  Score=92.92  Aligned_cols=128  Identities=19%  Similarity=0.188  Sum_probs=89.2

Q ss_pred             CeEEEEecccCcCCHHHHHHHHHHHHcCCeEEEEEeCChhhhhcCCCCCCCHHHHHHHHHH-ccCccEEEE--cCCCc--
Q 021802           51 PVRVYMDGCFDMMHYGHCNALRQARALGDQLVVGVVSDAEIIANKGPPVTPLHERMIMVNA-VKWVDEVIS--DAPYA--  125 (307)
Q Consensus        51 ~~~V~~~G~FD~lH~GH~~lL~qAk~~gd~LiVgV~sD~~i~~~Kg~pi~s~eER~~ll~~-~k~VD~Vv~--~~py~--  125 (307)
                      .+++.+.|+|||+|.||+.++++|.+++|.++|.|..+      + +..+|.++|++|++. ++..+.|.+  ..+|-  
T Consensus       139 ~~i~~~~g~fdP~t~GH~~li~~A~~~~d~~~v~v~~~------~-~~~f~~~~R~~~v~~~~~~~~nv~v~~~~~~~is  211 (332)
T TIGR00124       139 NKIGSIVMNANPFTNGHRYLIEQAARQCDWLHLFVVKE------D-ASLFSYDERFALVKQGIQDLSNVTVHNGSAYIIS  211 (332)
T ss_pred             CcEEEEEeCcCCCchHHHHHHHHHHHHCCEEEEEEEeC------C-CCCCCHHHHHHHHHHHhcCCCCEEEEecCCceec
Confidence            45699999999999999999999999999998888532      2 479999999999988 555554433  22221  


Q ss_pred             ---cc------H------------H-HHHHHHHhcCccEEEEcCCCCcCCCCCchHH-HHH---------hCCEEEEcCC
Q 021802          126 ---IT------K------------D-FMKKLFDEYNIDYIIHGDDPCVLPDGTDAYE-LAK---------KAGRYKQIKR  173 (307)
Q Consensus       126 ---~t------~------------d-fle~ll~~l~~d~VV~GdD~~fg~~g~d~y~-~lk---------~~g~v~vv~r  173 (307)
                         ++      +            . |-+.+...+++..-.+|+.|.--  -...|. .++         ...++..++|
T Consensus       212 ~atfp~yflk~~~~~~~~~~~ld~~~f~~~ia~~l~i~~r~vg~ep~~~--~t~~yn~~m~~~~~~~~~~~~I~~~~I~R  289 (332)
T TIGR00124       212 RATFPAYFLKEQDVADDCYTEIDLKLFRYKIAPALGITHRFVGTEPLCP--VTALYNQKMKYWLEEPNDAPPIEVVEIQR  289 (332)
T ss_pred             cccchhhhcCChhHHHHHHHHHHHHHHHHhchHhhCCccceeCCCCCCH--hHHHHHHHHHHhhhccCCCCCcEEEEEee
Confidence               11      0            1 22234445788888999987531  123453 222         1246788888


Q ss_pred             C----CCCCHHHHHHHHH
Q 021802          174 T----EGVSSTDIVGRML  187 (307)
Q Consensus       174 t----~~VSST~Ir~rIl  187 (307)
                      .    +-+|.|.||+.|.
T Consensus       290 ~~~~~~~~SASaIR~~L~  307 (332)
T TIGR00124       290 KLAAGGPISASTVRELLA  307 (332)
T ss_pred             ecCCCCeeCHHHHHHHHH
Confidence            3    3589999999984

ATP is cleaved to AMP and pyrophosphate during the reaction. The carboxyl end is homologous to a number of cytidyltransferases that also release pyrophosphate.

>cd02171 G3P_Cytidylyltransferase glycerol-3-phosphate cytidylyltransferase

Probab=98.74  E-value=1.3e-08  Score=84.84  Aligned_cols=40  Identities=38%  Similarity=0.739  Sum_probs=37.4

Q ss_pred             eEEEEeCcccccCHHHHHHHHHHHhCCCEEEEEEeCcccc
Q 021802          250 RIIYIDGAFDLFHAGHVEILRIARGLGDFLLVGIHNDQTV  289 (307)
Q Consensus       250 ~~v~~~G~FDl~H~GHi~~L~~a~~~g~~liVgv~~D~~v  289 (307)
                      ++|++.|+||.+|.||+.+|++|++.++.++|+|++|+..
T Consensus         2 ~~v~~~G~FDgvH~GH~~ll~~a~~~~~~l~v~v~~d~~~   41 (129)
T cd02171           2 KVVITYGTFDLLHIGHLNLLERAKALGDKLIVAVSTDEFN   41 (129)
T ss_pred             cEEEEeeeeccCCHHHHHHHHHHHHhCCEEEEEEeccHhH
Confidence            6799999999999999999999999999999999999743

Glycerol-3-phosphate cytidylyltransferase,(CDP-glycerol pyrophosphorylase). Glycerol-3-phosphate cytidyltransferase acts in pathways of teichoic acid biosynthesis. Teichoic acids are substituted polymers, linked by phosphodiester bonds, of glycerol, ribitol, etc. An example is poly(glycerol phosphate), the major teichoic acid of the Bacillus subtilis cell wall. Most, but not all, species encoding proteins in this family are Gram-positive bacteria. A closely related protein assigned a different function experimentally is a human ethanolamine-phosphate cytidylyltransferase.

>TIGR01526 nadR_NMN_Atrans nicotinamide-nucleotide adenylyltransferase, NadR type

Probab=98.73  E-value=9.4e-08  Score=92.09  Aligned_cols=63  Identities=22%  Similarity=0.207  Sum_probs=51.5

Q ss_pred             EEEEecccCcCCHHHHHHHHHHHHcCCeEEEEEeCChhhhhcCCCCCCCHHHHHHHHHH-ccCccE
Q 021802           53 RVYMDGCFDMMHYGHCNALRQARALGDQLVVGVVSDAEIIANKGPPVTPLHERMIMVNA-VKWVDE  117 (307)
Q Consensus        53 ~V~~~G~FD~lH~GH~~lL~qAk~~gd~LiVgV~sD~~i~~~Kg~pi~s~eER~~ll~~-~k~VD~  117 (307)
                      ++++.|+||++|.||+.++++|.+++|+|+|.+...+.  ..|..+..+.++|++|++. ++....
T Consensus         3 i~i~~GsFdP~H~GHl~ii~~a~~~~d~v~v~~~~~~~--~~~~~~~~~~~~R~~~l~~~~~~~~~   66 (325)
T TIGR01526         3 IGVVFGKFYPLHTGHIYLIYEAFSKVDELHIVVGSLFY--DSKAKRPPPVQDRLRWLREIFKYQKN   66 (325)
T ss_pred             EEEEeeccCCCCHHHHHHHHHHHHHCCEEEEEECCCCc--CccCCCCCCHHHHHHHHHHHhccCCC
Confidence            68999999999999999999999999999998876331  1133678899999999987 455554

E. coli NadR has also been found to regulate the import of its substrate, nicotinamide ribonucleotide, but it is not known if the other members of this model share that activity.

>KOG2804 consensus Phosphorylcholine transferase/cholinephosphate cytidylyltransferase [Lipid transport and metabolism]

Probab=98.72  E-value=9.4e-09  Score=97.05  Aligned_cols=45  Identities=36%  Similarity=0.623  Sum_probs=41.1

Q ss_pred             eEEEEeCcccccCHHHHHHHHHHHhC--CCEEEEEEeCcccccccCC
Q 021802          250 RIIYIDGAFDLFHAGHVEILRIARGL--GDFLLVGIHNDQTVRLKNP  294 (307)
Q Consensus       250 ~~v~~~G~FDl~H~GHi~~L~~a~~~--g~~liVgv~~D~~v~~~~~  294 (307)
                      -.||.+|.|||||.||.++|+|||+.  .-||||||++|+...+.||
T Consensus        64 VRVYADGIyDLFH~GHarqL~QaK~~FPNvyLiVGvc~De~Thk~KG  110 (348)
T KOG2804|consen   64 VRVYADGIYDLFHYGHARQLEQAKKLFPNVYLIVGVCSDELTHKFKG  110 (348)
T ss_pred             eEEEccchHHHhhhhHHHHHHHHHHhCCCeEEEEeecCchhhhhccC
Confidence            56999999999999999999999986  3699999999998888776

>COG1019 Predicted nucleotidyltransferase [General function prediction only]

Probab=98.53  E-value=8.5e-08  Score=82.75  Aligned_cols=51  Identities=25%  Similarity=0.498  Sum_probs=45.5

Q ss_pred             CeEEEEeCcccccCHHHHHHHHHHHhCCCEEEEEEeCcccccc--cCCCcccc
Q 021802          249 ARIIYIDGAFDLFHAGHVEILRIARGLGDFLLVGIHNDQTVRL--KNPSVSFI  299 (307)
Q Consensus       249 ~~~v~~~G~FDl~H~GHi~~L~~a~~~g~~liVgv~~D~~v~~--~~~~~~~~  299 (307)
                      -.+|.+.|+||-+|.||-.+|+.|...|+.+++||++|+.+++  .+++.|+.
T Consensus         5 fm~vavGGTFd~LH~GHk~LL~~A~~~G~~v~IGlTsDe~~k~~k~~~i~p~~   57 (158)
T COG1019           5 FMKVAVGGTFDRLHDGHKKLLEVAFEIGDRVTIGLTSDELAKKKKKEKIEPYE   57 (158)
T ss_pred             ceEEEecccchhhhhhHHHHHHHHHHhCCeEEEEEccHHHHHHhccccCCcHH
Confidence            4679999999999999999999999999999999999999975  45677764

>PRK00168 coaD phosphopantetheine adenylyltransferase; Provisional

Probab=98.45  E-value=2.4e-07  Score=80.48  Aligned_cols=38  Identities=29%  Similarity=0.475  Sum_probs=35.6

Q ss_pred             eEEEEeCcccccCHHHHHHHHHHHhCCCEEEEEEeCcc
Q 021802          250 RIIYIDGAFDLFHAGHVEILRIARGLGDFLLVGIHNDQ  287 (307)
Q Consensus       250 ~~v~~~G~FDl~H~GHi~~L~~a~~~g~~liVgv~~D~  287 (307)
                      +++++.|+||++|.||+.++++|++.+|.|+|++.++.
T Consensus         2 ~igi~gGsFdP~H~GHl~~~~~a~~~~d~v~v~~~~~~   39 (159)
T PRK00168          2 KIAIYPGSFDPITNGHLDIIERASRLFDEVIVAVAINP   39 (159)
T ss_pred             cEEEEeeecCCCCHHHHHHHHHHHHHCCEEEEEECCCC
Confidence            68999999999999999999999999999999998764

>cd02164 PPAT_CoAS phosphopantetheine adenylyltransferase domain of eukaryotic and archaeal bifunctional enzymes

Probab=98.41  E-value=2.3e-07  Score=79.67  Aligned_cols=40  Identities=30%  Similarity=0.600  Sum_probs=36.2

Q ss_pred             EEEeCcccccCHHHHHHHHHHHhCC-CEEEEEEeCcccccc
Q 021802          252 IYIDGAFDLFHAGHVEILRIARGLG-DFLLVGIHNDQTVRL  291 (307)
Q Consensus       252 v~~~G~FDl~H~GHi~~L~~a~~~g-~~liVgv~~D~~v~~  291 (307)
                      |++.|+||.+|.||..+|++|.+++ +.++||++.|+....
T Consensus         2 v~~GGtFD~lH~GH~~Ll~~a~~~~~d~v~vgvt~d~~~~~   42 (143)
T cd02164           2 VAVGGTFDRLHDGHKILLSVAFLLAGEKLIIGVTSDELLKN   42 (143)
T ss_pred             EEEcccCCCCCHHHHHHHHHHHHHhcCCcEEEEeCchhccc
Confidence            7889999999999999999999987 899999999985543

The PPAT domain of the bifunctional enzyme with PPAT and DPCK functions. The final two steps of the CoA biosynthesis pathway are catalyzed by phosphopantetheine adenylyltransferase (PPAT) and dephospho-CoA (dPCoA) kinase (DPCK). The PPAT reaction involves the reversible adenylation of 4'-phosphopantetheine to form 3'-dPCoA and PPi, and DPCK catalyses phosphorylation of the 3'-hydroxy group of the ribose moiety of dPCoA. In eukaryotes the two enzymes are part of a large multienzyme complex . Studies in Corynebacterium ammoniagenes suggested that separate enzymes were present, and this was confirmed through identification of the bacterial PPAT/CoAD.

>COG1056 NadR Nicotinamide mononucleotide adenylyltransferase [Coenzyme metabolism]

Probab=98.39  E-value=6.1e-07  Score=79.29  Aligned_cols=60  Identities=23%  Similarity=0.242  Sum_probs=51.1

Q ss_pred             CCeEEEEecccCcCCHHHHHHHHHHHHcCCeEEEEEeCChhhhhcCCCCCCCHHHHHHHHHH
Q 021802           50 KPVRVYMDGCFDMMHYGHCNALRQARALGDQLVVGVVSDAEIIANKGPPVTPLHERMIMVNA  111 (307)
Q Consensus        50 ~~~~V~~~G~FD~lH~GH~~lL~qAk~~gd~LiVgV~sD~~i~~~Kg~pi~s~eER~~ll~~  111 (307)
                      +..+.+++|.|.++|.||+.+++.|.+..|+|+|+|.++......  ...+|..||..|++.
T Consensus         2 ~~~rgv~~GRFqP~H~GHl~vi~~al~~vDeliI~iGSa~~~~t~--~nPfTagER~~mi~~   61 (172)
T COG1056           2 RMKRGVYFGRFQPLHTGHLYVIKRALSKVDELIIVIGSAQESHTL--KNPFTAGERIPMIRD   61 (172)
T ss_pred             CceEEEEEeccCCccHhHHHHHHHHHHhCCEEEEEEccCcccccc--cCCCCccchhHHHHH
Confidence            456799999999999999999999999999999999998743222  356888999999885

>KOG3351 consensus Predicted nucleotidyltransferase [General function prediction only]

Probab=98.37  E-value=8.4e-07  Score=82.10  Aligned_cols=134  Identities=22%  Similarity=0.271  Sum_probs=87.9

Q ss_pred             cCCCCeEEEEecccCcCCHHHHHHHHHHHHcC-CeEEEEEeCChhhhhcCC-CCCCCHHHHHHHHHH----cc---CccE
Q 021802           47 KKKKPVRVYMDGCFDMMHYGHCNALRQARALG-DQLVVGVVSDAEIIANKG-PPVTPLHERMIMVNA----VK---WVDE  117 (307)
Q Consensus        47 ~~~~~~~V~~~G~FD~lH~GH~~lL~qAk~~g-d~LiVgV~sD~~i~~~Kg-~pi~s~eER~~ll~~----~k---~VD~  117 (307)
                      +.++-.++...|+||-+|.||.-+|..|..++ ++++|||..|+.+.+.+- ..+.|.++|.+.+..    +|   .|+.
T Consensus       138 ~a~~~~~~alGGTFDrLH~gHKvLLs~aa~la~~~lVvGV~d~elL~kK~~~Eliepie~R~~~V~~Fl~~IKp~l~~~~  217 (293)
T KOG3351|consen  138 PANKFMVVALGGTFDRLHDGHKVLLSVAAELASDRLVVGVTDDELLKKKVLKELIEPIEERKEHVSNFLKSIKPDLNVRV  217 (293)
T ss_pred             chhcceeEEeccchhhhccchHHHHHHHHHHhhceEEEEecChHHHHHhHHHHHhhhHHHHHHHHHHHHHhcCCCceEEE
Confidence            33445579999999999999999999999997 789999998886643222 478999999998765    33   2344


Q ss_pred             EEEcCCCcccHHHHHHHHHhcCccEEEEcCCCCcCCCCCchHHHHHhCC--EEEEcCC---CCCCCHHHHHHHHH
Q 021802          118 VISDAPYAITKDFMKKLFDEYNIDYIIHGDDPCVLPDGTDAYELAKKAG--RYKQIKR---TEGVSSTDIVGRML  187 (307)
Q Consensus       118 Vv~~~py~~t~dfle~ll~~l~~d~VV~GdD~~fg~~g~d~y~~lk~~g--~v~vv~r---t~~VSST~Ir~rIl  187 (307)
                      +=+-.||.++..       .-..+++|+...-..|+..-+..+.-+-..  .+.+++-   .+.+|+|++++.-.
T Consensus       218 vpi~Dp~GPt~~-------d~elE~lVVS~ET~~Ga~aVNr~R~E~glseLai~vVell~~~~kls~t~~~~~kv  285 (293)
T KOG3351|consen  218 VPIHDPFGPTIT-------DPELEALVVSEETKTGATAVNRKRVERGLSELAIYVVELLYDAQKLSSTENRELKV  285 (293)
T ss_pred             EecccCCCCCcc-------CCcceEEEEeeccccchhhhhHHHHHcCCchheEEEEeeccChhhcchhHHHHhhh
Confidence            433367764421       135688898887655544332222211111  2444444   35699999986543

>TIGR01527 arch_NMN_Atrans nicotinamide-nucleotide adenylyltransferase

Probab=98.36  E-value=5.5e-07  Score=79.16  Aligned_cols=37  Identities=32%  Similarity=0.530  Sum_probs=34.7

Q ss_pred             EEEeCcccccCHHHHHHHHHHHhCCCEEEEEEeCccc
Q 021802          252 IYIDGAFDLFHAGHVEILRIARGLGDFLLVGIHNDQT  288 (307)
Q Consensus       252 v~~~G~FDl~H~GHi~~L~~a~~~g~~liVgv~~D~~  288 (307)
                      +++.|+||+||.||+.++++|++.+|.|+|+|.+++.
T Consensus         2 gl~~G~FdP~H~GHl~ii~~a~~~~D~lii~i~s~~~   38 (165)
T TIGR01527         2 GFYIGRFQPFHLGHLEVIKKIAEEVDELIIGIGSAQE   38 (165)
T ss_pred             eEEEeccCCCCHHHHHHHHHHHHHCCEEEEEEcCCCC
Confidence            5789999999999999999999999999999988874

In some archaeal species, a lower-scoring paralog, uncharacterized with respect to activity, is also present. These score between trusted and noise cutoffs.

>PRK13964 coaD phosphopantetheine adenylyltransferase; Provisional

Probab=98.29  E-value=1.1e-06  Score=75.41  Aligned_cols=38  Identities=37%  Similarity=0.533  Sum_probs=35.2

Q ss_pred             eEEEEeCcccccCHHHHHHHHHHHhCCCEEEEEEeCcc
Q 021802          250 RIIYIDGAFDLFHAGHVEILRIARGLGDFLLVGIHNDQ  287 (307)
Q Consensus       250 ~~v~~~G~FDl~H~GHi~~L~~a~~~g~~liVgv~~D~  287 (307)
                      ++++.+|+||++|.||+.++++|.+.+|.|+|++..+.
T Consensus         2 kiai~~GSFDPih~GHl~ii~~A~~~~D~v~v~v~~np   39 (140)
T PRK13964          2 KIAIYPGSFDPFHKGHLNILKKALKLFDKVYVVVSINP   39 (140)
T ss_pred             eEEEEeeeeCCCCHHHHHHHHHHHHhCCEEEEEeccCC
Confidence            58899999999999999999999999999999998763

>cd02039 cytidylyltransferase_like Cytidylyltransferase-like domain

Probab=98.24  E-value=1e-06  Score=72.90  Aligned_cols=40  Identities=25%  Similarity=0.431  Sum_probs=36.3

Q ss_pred             EEEEeCcccccCHHHHHHHHHHHhCC-CEEEEEEeCccccc
Q 021802          251 IIYIDGAFDLFHAGHVEILRIARGLG-DFLLVGIHNDQTVR  290 (307)
Q Consensus       251 ~v~~~G~FDl~H~GHi~~L~~a~~~g-~~liVgv~~D~~v~  290 (307)
                      ++++.|+||++|.||+.++++|++.+ |.++|++.++....
T Consensus         1 ~~~~~G~Fdp~H~GH~~ll~~a~~~~~~~~~v~~~~~~~~~   41 (143)
T cd02039           1 VGIIIGRFEPFHLGHLKLIKEALEEALDEVIIIIVSNPPKK   41 (143)
T ss_pred             CeEEeeccCCcCHHHHHHHHHHHHHcCCceEEEEcCCChhh
Confidence            47899999999999999999999998 99999999986543

Cytidylyltransferase-like domain. Many of these proteins are known to use CTP or ATP and release pyrophosphate. Protein families that contain at least one copy of this domain include citrate lyase ligase, pantoate-beta-alanine ligase, glycerol-3-phosphate cytidyltransferase, ADP-heptose synthase, phosphocholine cytidylyltransferase, lipopolysaccharide core biosynthesis protein KdtB, the bifunctional protein NadR, and a number whose function is unknown.

>PF01467 CTP_transf_2: Cytidylyltransferase; InterPro: IPR004820 This family includes []: Cholinephosphate cytidyltransferase (P49585 from SWISSPROT)

Probab=98.23  E-value=8.6e-07  Score=73.80  Aligned_cols=39  Identities=36%  Similarity=0.532  Sum_probs=30.6

Q ss_pred             EEeCcccccCHHHHHHHHHHHhCCCE-EEEEEeCcccccc
Q 021802          253 YIDGAFDLFHAGHVEILRIARGLGDF-LLVGIHNDQTVRL  291 (307)
Q Consensus       253 ~~~G~FDl~H~GHi~~L~~a~~~g~~-liVgv~~D~~v~~  291 (307)
                      ++.|+||++|.||+.+|++|++.++. +|+++.+|....+
T Consensus         1 l~~GsFdP~H~GH~~~l~~a~~~~~~~~vi~v~~~~~~~k   40 (157)
T PF01467_consen    1 LFGGSFDPPHNGHLNLLREARELFDEDLVIVVPSDNSPHK   40 (157)
T ss_dssp             EEEE--TT--HHHHHHHHHHHHHSSESEEEEEEEEHHCHS
T ss_pred             CeeeEcCcccHHHHHHHHHHHHhccccccccccccccccc
Confidence            57899999999999999999999987 7888888876654

Glycerol-3-phosphate cytidyltransferase (P27623 from SWISSPROT). CTP:cholinephosphate cytidylyltransferase (CCT) is a key regulatory enzyme in phosphatidylcholine biosynthesis that catalyzes the formation of CDP-choline. A comparison of the catalytic domains of CCTs from a wide variety of organisms reveals a large number of completely conserved residues. There may be a role for the conserved HXGH sequence in catalysis. The membrane-binding domain in rat CCT has been defined, and it has been suggested that lipids may play a role in inactivating the enzyme. A phosphorylation domain has been described [].; GO: 0016779 nucleotidyltransferase activity, 0009058 biosynthetic process; PDB: 1O6B_A 1H1T_A 1B6T_A 1GN8_A 1QJC_A 3ELB_A 3NBK_A 3NBA_A 1TFU_A 3LCJ_A ....

>cd02156 nt_trans nucleotidyl transferase superfamily

Probab=98.14  E-value=2.3e-06  Score=68.90  Aligned_cols=39  Identities=26%  Similarity=0.491  Sum_probs=35.9

Q ss_pred             EEEeCcccccCHHHHHHHHHHHhCCCEEEEEEeCccccc
Q 021802          252 IYIDGAFDLFHAGHVEILRIARGLGDFLLVGIHNDQTVR  290 (307)
Q Consensus       252 v~~~G~FDl~H~GHi~~L~~a~~~g~~liVgv~~D~~v~  290 (307)
                      +++.|+||++|.||+.++++|++.+|.+++++.++....
T Consensus         2 ~~~~G~Fdp~H~GH~~l~~~a~~~~d~~i~~i~~~~~~~   40 (105)
T cd02156           2 ARFPGEPGYLHIGHAKLICRAKGIADQCVVRIDDNPPVK   40 (105)
T ss_pred             EEeCCCCCCCCHHHHHHHHHHHHhCCcEEEEEcCCCccc
Confidence            678999999999999999999999999999999887654

nt_trans (nucleotidyl transferase) This superfamily includes the class I amino-acyl tRNA synthetases, pantothenate synthetase (PanC), ATP sulfurylase, and the cytidylyltransferases, all of which have a conserved dinucleotide-binding domain.

>cd02166 NMNAT_Archaea Nicotinamide/nicotinate mononucleotide adenylyltransferase, archaeal

Probab=98.14  E-value=2.8e-06  Score=74.20  Aligned_cols=38  Identities=29%  Similarity=0.478  Sum_probs=34.5

Q ss_pred             EEEeCcccccCHHHHHHHHHHHhCCCEEEEEEeCcccc
Q 021802          252 IYIDGAFDLFHAGHVEILRIARGLGDFLLVGIHNDQTV  289 (307)
Q Consensus       252 v~~~G~FDl~H~GHi~~L~~a~~~g~~liVgv~~D~~v  289 (307)
                      +++.|+||+||.||+.++++|.+.+|.|+|+|.++...
T Consensus         2 ~v~~G~FdP~H~GHl~~i~~a~~~~d~l~v~v~s~~~~   39 (163)
T cd02166           2 ALFIGRFQPFHLGHLKVIKWILEEVDELIIGIGSAQES   39 (163)
T ss_pred             eEEeeccCCCCHHHHHHHHHHHHHCCEEEEEecCCCCC
Confidence            57899999999999999999999999999999777544

This family of archaeal proteins exhibits nicotinamide-nucleotide adenylyltransferase (NMNAT) activity utilizing the salvage pathway to synthesize NAD. In some cases, the enzyme was tested and found also to have the activity of nicotinate-nucleotide adenylyltransferase an enzyme of NAD de novo biosynthesis, although with a higher Km. In some archaeal species, a number of proteins which are uncharacterized with respect to activity, are also present.

>PLN02388 phosphopantetheine adenylyltransferase

Probab=98.13  E-value=3e-06  Score=75.35  Aligned_cols=46  Identities=26%  Similarity=0.521  Sum_probs=39.8

Q ss_pred             CCCCCeEEEEeCcccccCHHHHHHHHHHHhCC-CEEEEEEeCccccc
Q 021802          245 PGPDARIIYIDGAFDLFHAGHVEILRIARGLG-DFLLVGIHNDQTVR  290 (307)
Q Consensus       245 ~~~~~~~v~~~G~FDl~H~GHi~~L~~a~~~g-~~liVgv~~D~~v~  290 (307)
                      +......|++.|+||.+|.||..+|++|.+.+ +.++||+++|....
T Consensus        15 ~~~~~~~Vv~gGtFDgLH~GHq~LL~~A~~~a~~~vvIgft~~p~l~   61 (177)
T PLN02388         15 PPNSYGAVVLGGTFDRLHDGHRLFLKAAAELARDRIVIGVCDGPMLS   61 (177)
T ss_pred             CCCcCCeEEEEecCCccCHHHHHHHHHHHHhhhcCEEEecCCChhhc
Confidence            33346789999999999999999999999987 48999999998764

>TIGR00018 panC pantoate--beta-alanine ligase

Probab=98.08  E-value=1.7e-05  Score=75.40  Aligned_cols=72  Identities=25%  Similarity=0.278  Sum_probs=56.7

Q ss_pred             hhcCCCCe-EEEEecccCcCCHHHHHHHHHHHHcCCeEEEEEeCChhhhhc-CC--CCCCCHHHHHHHHHHccCccEEEE
Q 021802           45 TRKKKKPV-RVYMDGCFDMMHYGHCNALRQARALGDQLVVGVVSDAEIIAN-KG--PPVTPLHERMIMVNAVKWVDEVIS  120 (307)
Q Consensus        45 ~~~~~~~~-~V~~~G~FD~lH~GH~~lL~qAk~~gd~LiVgV~sD~~i~~~-Kg--~pi~s~eER~~ll~~~k~VD~Vv~  120 (307)
                      ++..++++ -|.++|+   +|.||+.++++|++.++.++|.+..+|.-... ..  +.+++.++|.++++++ +||.++.
T Consensus        17 ~~~~g~~ig~VpTmG~---LH~GH~~LI~~a~~~a~~vVvTffvnP~qf~~~ed~~~yp~tle~d~~ll~~~-GVD~vf~   92 (282)
T TIGR00018        17 LRMEGKTVGFVPTMGN---LHDGHMSLIDRAVAENDVVVVSIFVNPMQFGPNEDLEAYPRTLEEDCALLEKL-GVDVVFA   92 (282)
T ss_pred             HHHcCCeEEEEECCCc---ccHHHHHHHHHHHHhCCeEEEEecCChHHhCCccccccCCCCHHHHHHHHHHc-CCCEEEC
Confidence            34444432 3679999   99999999999999999889888888753222 22  4688999999999998 9998876

This family is pantoate--beta-alanine ligase, the last enzyme of pantothenate biosynthesis.

>TIGR01510 coaD_prev_kdtB pantetheine-phosphate adenylyltransferase, bacterial

Probab=98.06  E-value=3.9e-06  Score=72.54  Aligned_cols=36  Identities=31%  Similarity=0.540  Sum_probs=33.4

Q ss_pred             EEEEeCcccccCHHHHHHHHHHHhCCCEEEEEEeCc
Q 021802          251 IIYIDGAFDLFHAGHVEILRIARGLGDFLLVGIHND  286 (307)
Q Consensus       251 ~v~~~G~FDl~H~GHi~~L~~a~~~g~~liVgv~~D  286 (307)
                      +++..|+||++|.||+.++++|++.+|.|+++++.+
T Consensus         1 i~l~gGsFdP~H~GHl~l~~~a~~~~d~v~~~~~~~   36 (155)
T TIGR01510         1 IALYPGSFDPVTNGHLDIIKRAAALFDEVIVAVAKN   36 (155)
T ss_pred             CEEEEeecCCCcHHHHHHHHHHHHhCCEEEEEEcCC
Confidence            478899999999999999999999999999999854

This model describes pantetheine-phosphate adenylyltransferase, the penultimate enzyme of coenzyme A (CoA) biosynthesis in bacteria. It does not show any strong homology to eukaryotic enzymes of coenzyme A biosynthesis. This protein was previously designated KdtB and postulated (because of cytidyltransferase homology and proximity to kdtA) to be an enzyme of LPS biosynthesis, a cytidyltransferase for 3-deoxy-D-manno-2-octulosonic acid. However, no activity toward that compound was found with either CTP or ATP. The phylogenetic distribution of this enzyme is more consistent with coenzyme A biosynthesis than with LPS biosynthesis.

>cd02163 PPAT Phosphopantetheine adenylyltransferase

Probab=98.03  E-value=5.1e-06  Score=71.76  Aligned_cols=37  Identities=30%  Similarity=0.464  Sum_probs=34.1

Q ss_pred             EEEEeCcccccCHHHHHHHHHHHhCCCEEEEEEeCcc
Q 021802          251 IIYIDGAFDLFHAGHVEILRIARGLGDFLLVGIHNDQ  287 (307)
Q Consensus       251 ~v~~~G~FDl~H~GHi~~L~~a~~~g~~liVgv~~D~  287 (307)
                      +++..|+||++|.||+.++++|++.+|.|+++++++.
T Consensus         1 i~i~gGsFdP~H~GHl~l~~~a~~~~d~v~v~~~~~~   37 (153)
T cd02163           1 IAVYPGSFDPITNGHLDIIERASKLFDEVIVAVAVNP   37 (153)
T ss_pred             CEEEEeccCCCCHHHHHHHHHHHHHCCEEEEEEcCCC
Confidence            4688999999999999999999999999999998764

Phosphopantetheine adenylyltransferase (PPAT). PPAT is an essential enzyme in bacteria, responsible for catalyzing the rate-limiting step in coenzyme A (CoA) biosynthesis. The dinucleotide-binding fold of PPAT is homologous to class I aminoacyl-tRNA synthetases. CoA has been shown to inhibit PPAT and competes with ATP, PhP, and dPCoA. PPAT is a homohexamer in E. coli.

>cd02167 NMNAT_NadR Nicotinamide/nicotinate mononucleotide adenylyltransferase of bifunctional NadR-like proteins

Probab=98.01  E-value=6.9e-06  Score=71.50  Aligned_cols=39  Identities=33%  Similarity=0.372  Sum_probs=35.1

Q ss_pred             EEEEeCcccccCHHHHHHHHHHHhCCCEEEEEEeCcccc
Q 021802          251 IIYIDGAFDLFHAGHVEILRIARGLGDFLLVGIHNDQTV  289 (307)
Q Consensus       251 ~v~~~G~FDl~H~GHi~~L~~a~~~g~~liVgv~~D~~v  289 (307)
                      ++++.|+||++|.||+.++++|.+.+|.|+|++.++..-
T Consensus         1 igl~~G~F~P~H~GHl~li~~a~~~~d~v~vi~~~~~~~   39 (158)
T cd02167           1 IGIVFGKFAPLHTGHVYLIYKALSQVDELLIIVGSDDTR   39 (158)
T ss_pred             CEEEeeccCCCCHHHHHHHHHHHHHCCEEEEEECCCCcc
Confidence            357899999999999999999999999999999988643

NMNAT domain of NadR protein. The NadR protein (NadR) is a bifunctional enzyme possessing both NMN adenylytransferase (NMNAT) and ribosylnicotinamide kinase (RNK) activities. Its function is essential for the growth and survival of H. influenzae and thus may present a new highly specific anti-infectious drug target. The N-terminal domain that hosts the NMNAT activity is closely related to archaeal NMNAT. The bound NAD at the active site of the NMNAT domain reveals several critical interactions between NAD and the protein.The NMNAT domain of hiNadR defines yet another member of the pyridine nucleotide adenylyltransferase

>PLN02660 pantoate--beta-alanine ligase

Probab=97.99  E-value=3.1e-05  Score=73.63  Aligned_cols=74  Identities=26%  Similarity=0.286  Sum_probs=57.8

Q ss_pred             HhhhcCCCC-eEEEEecccCcCCHHHHHHHHHHHHcCCeEEEEEeCChhhhhc-CC--CCCCCHHHHHHHHHHccCccEE
Q 021802           43 QWTRKKKKP-VRVYMDGCFDMMHYGHCNALRQARALGDQLVVGVVSDAEIIAN-KG--PPVTPLHERMIMVNAVKWVDEV  118 (307)
Q Consensus        43 ~~~~~~~~~-~~V~~~G~FD~lH~GH~~lL~qAk~~gd~LiVgV~sD~~i~~~-Kg--~pi~s~eER~~ll~~~k~VD~V  118 (307)
                      +.++..+++ .-|.++|.   +|.||+.++++|++.++.+++.+..+|.-... ..  +.++|.++|.++++++ +||.+
T Consensus        14 ~~~~~~g~~igfVpTmG~---LH~GH~~LI~~a~~~a~~vVvTffvnP~qf~~~ed~~~yp~tle~d~~ll~~~-GVD~v   89 (284)
T PLN02660         14 RAQRAQGKRIALVPTMGY---LHEGHLSLVRAARARADVVVVSIYVNPGQFAPGEDLDTYPRDFDGDLRKLAAL-GVDAV   89 (284)
T ss_pred             HHHHHcCCeEEEEEcCch---hhHHHHHHHHHHHHhCCEEEEEEeCChHHcCCccccccCCCCHHHHHHHHHHc-CCCEE
Confidence            334444443 24789999   99999999999999999888888888754221 22  4688999999999998 99988


Q ss_pred             EE
Q 021802          119 IS  120 (307)
Q Consensus       119 v~  120 (307)
                      +.
T Consensus        90 f~   91 (284)
T PLN02660         90 FN   91 (284)
T ss_pred             EC
Confidence            66

>PF08218 Citrate_ly_lig: Citrate lyase ligase C-terminal domain; InterPro: IPR013166 [Citrate (pro-3S)-lyase] ligase (6

Probab=97.92  E-value=4.4e-05  Score=67.82  Aligned_cols=121  Identities=22%  Similarity=0.231  Sum_probs=83.3

Q ss_pred             cCcCCHHHHHHHHHHHHcCCeEEEEEeCChhhhhcCCCCCCCHHHHHHHHHH-ccCccEEEE--cCCCc-----cc----
Q 021802           60 FDMMHYGHCNALRQARALGDQLVVGVVSDAEIIANKGPPVTPLHERMIMVNA-VKWVDEVIS--DAPYA-----IT----  127 (307)
Q Consensus        60 FD~lH~GH~~lL~qAk~~gd~LiVgV~sD~~i~~~Kg~pi~s~eER~~ll~~-~k~VD~Vv~--~~py~-----~t----  127 (307)
                      =++|+.||+-|+++|.+.+|.|.|-|.+..       +-.+|.++|++|+++ ++..+.|.+  +-+|-     ++    
T Consensus         8 aNPFT~GH~yLiE~Aa~~~d~l~vFVV~eD-------~S~Fpf~~R~~LVk~G~~~L~NV~V~~~g~YiIS~aTFPsYFl   80 (182)
T PF08218_consen    8 ANPFTLGHRYLIEQAAKECDWLHVFVVSED-------RSLFPFADRYELVKEGTADLPNVTVHPGGDYIISSATFPSYFL   80 (182)
T ss_pred             CCCCccHHHHHHHHHHHhCCEEEEEEEccc-------cCcCCHHHHHHHHHHHhCcCCCEEEEcCCCeeeecccChhhhc
Confidence            479999999999999999999877665543       367999999999988 544555544  22231     10    


Q ss_pred             --------------HH-HHHHHHHhcCccEEEEcCCCCcCCCCCchHH-HHH----h-CCEEEEcCCC----CCCCHHHH
Q 021802          128 --------------KD-FMKKLFDEYNIDYIIHGDDPCVLPDGTDAYE-LAK----K-AGRYKQIKRT----EGVSSTDI  182 (307)
Q Consensus       128 --------------~d-fle~ll~~l~~d~VV~GdD~~fg~~g~d~y~-~lk----~-~g~v~vv~rt----~~VSST~I  182 (307)
                                    .. |.+.+...+++..-.+|+.+.--  -...|. .++    . +..+.+++|.    +.||-|..
T Consensus        81 K~~~~~~~~~~~lD~~iF~~~IAp~L~It~RfVG~EP~~~--vT~~YN~~M~~~Lp~~gi~v~ei~R~~~~g~~ISAS~V  158 (182)
T PF08218_consen   81 KDEDDVIKAQAELDATIFKKYIAPALGITKRFVGEEPFSP--VTRIYNEAMKEILPPYGIEVVEIPRKEINGEPISASRV  158 (182)
T ss_pred             cchhHHHHHHHHHHHHHHHHHhhHhcCcccceeCCCCCCH--HHHHHHHHHHHhccccCCEEEEEecccCCCcEEcHHHH
Confidence                          01 33335556899999999987531  123443 222    2 3578999995    45999999


Q ss_pred             HHHHHhh
Q 021802          183 VGRMLLC  189 (307)
Q Consensus       183 r~rIl~~  189 (307)
                      |+.|.+.
T Consensus       159 R~~l~~~  165 (182)
T PF08218_consen  159 RKLLKEG  165 (182)
T ss_pred             HHHHHcC
Confidence            9998744

2.1.22 from EC), also known as citrate lyase ligase, is responsible for acetylation of the prosthetic group (2-(5''-phosphoribosyl)-3'-dephosphocoenzyme-A) of the gamma subunit of citrate lyase. It converts the inactive thiol form of the enzyme to the active form. In Clostridium sphenoides, citrate lyase ligase actively degrades citrate. In Clostridium sporosphaeroides and Lactococcus lactis, however, the enzyme is under stringent regulatory control. The enzyme's activity in anaerobic bacteria is modulated by phosphorylation and dephosphorylation []. The proteins in this entry represent the C-terminal domain of citrate lyase ligase.; GO: 0008771 [citrate (pro-3S)-lyase] ligase activity

>COG0669 CoaD Phosphopantetheine adenylyltransferase [Coenzyme metabolism]

Probab=97.88  E-value=1.6e-05  Score=69.20  Aligned_cols=47  Identities=30%  Similarity=0.486  Sum_probs=40.0

Q ss_pred             CeEEEEeCcccccCHHHHHHHHHHHhCCCEEEEEEeCcccccccCCCccc
Q 021802          249 ARIIYIDGAFDLFHAGHVEILRIARGLGDFLLVGIHNDQTVRLKNPSVSF  298 (307)
Q Consensus       249 ~~~v~~~G~FDl~H~GHi~~L~~a~~~g~~liVgv~~D~~v~~~~~~~~~  298 (307)
                      +++++.+|+||+++.||+.++++|.+.-|.|||+|....   .++|..++
T Consensus         2 ~~iavypGSFDPiTnGHlDii~RA~~~Fd~viVaV~~np---~K~plFsl   48 (159)
T COG0669           2 MKIAVYPGSFDPITNGHLDIIKRASALFDEVIVAVAINP---SKKPLFSL   48 (159)
T ss_pred             CeeEEeCCCCCCCccchHHHHHHHHHhccEEEEEEEeCC---CcCCCcCH
Confidence            578999999999999999999999999999999998664   34555443

>PRK05379 bifunctional nicotinamide mononucleotide adenylyltransferase/ADP-ribose pyrophosphatase; Provisional

Probab=97.87  E-value=2.2e-05  Score=76.21  Aligned_cols=40  Identities=25%  Similarity=0.383  Sum_probs=37.0

Q ss_pred             CCeEEEEeCcccccCHHHHHHHHHHHhCCCEEEEEEeCcc
Q 021802          248 DARIIYIDGAFDLFHAGHVEILRIARGLGDFLLVGIHNDQ  287 (307)
Q Consensus       248 ~~~~v~~~G~FDl~H~GHi~~L~~a~~~g~~liVgv~~D~  287 (307)
                      ..+++++.|+||+||.||+.++++|.+.+|.|+|++.+..
T Consensus         5 ~~~~~~~~G~F~P~H~GHl~~i~~a~~~~d~l~v~i~s~~   44 (340)
T PRK05379          5 RYDYLVFIGRFQPFHNGHLAVIREALSRAKKVIVLIGSAD   44 (340)
T ss_pred             cceEEEEeeccCCCCHHHHHHHHHHHHHCCEEEEEEccCC
Confidence            4679999999999999999999999999999999998654

>PF05636 HIGH_NTase1: HIGH Nucleotidyl Transferase; InterPro: IPR008513 This family consists of several bacterial proteins of unknown function

Probab=97.83  E-value=3.3e-05  Score=76.47  Aligned_cols=89  Identities=24%  Similarity=0.434  Sum_probs=39.1

Q ss_pred             EecccCcCCHHHHHHHHHHHHcC--CeEEEEEeCChhhhhcCC-CCCCCHHHHHHHHHHccCccEEEEcCCCcc----cH
Q 021802           56 MDGCFDMMHYGHCNALRQARALG--DQLVVGVVSDAEIIANKG-PPVTPLHERMIMVNAVKWVDEVISDAPYAI----TK  128 (307)
Q Consensus        56 ~~G~FD~lH~GH~~lL~qAk~~g--d~LiVgV~sD~~i~~~Kg-~pi~s~eER~~ll~~~k~VD~Vv~~~py~~----t~  128 (307)
                      ++==|+|||.||+-.|+++|+..  |. +|+|-|-..+  ..| |-+++--.|.++.-.+ |||-|++ .|+.+    .+
T Consensus         6 IIaEYNPFHnGH~y~i~~~k~~~~ad~-ii~vMSGnFv--QRGEPAi~dKw~RA~~AL~~-GaDLViE-LP~~~a~qsA~   80 (388)
T PF05636_consen    6 IIAEYNPFHNGHLYQIEQAKKITGADV-IIAVMSGNFV--QRGEPAIIDKWTRAEMALKN-GADLVIE-LPVVYALQSAE   80 (388)
T ss_dssp             -E---TT--HHHHHHHHHHH---TSSE-EEEEE--TTS--BTSSB-SS-HHHHHHHHHHH-T-SEEEE----G-------
T ss_pred             eEEeECCccHHHHHHHHHHhccCCCCE-EEEEECCCcc--cCCCeeeCCHHHHHHHHHHc-CCCEEEE-CCCcccccccc
Confidence            34459999999999999999873  54 5556565544  345 7799999999998887 9999999 88754    24


Q ss_pred             HHHH---HHHHhcCccEEEEcCCC
Q 021802          129 DFMK---KLFDEYNIDYIIHGDDP  149 (307)
Q Consensus       129 dfle---~ll~~l~~d~VV~GdD~  149 (307)
                      .|..   .+++.++||+++-|...
T Consensus        81 ~FA~gaV~lL~~lgvd~l~FGsE~  104 (388)
T PF05636_consen   81 YFARGAVSLLNALGVDYLSFGSES  104 (388)
T ss_dssp             ------------------------
T ss_pred             cccccccccccccccccccccccc
Confidence            4543   27788899999988653

; PDB: 3GMI_A.

>PRK13793 nicotinamide-nucleotide adenylyltransferase; Provisional

Probab=97.67  E-value=6.9e-05  Score=67.73  Aligned_cols=39  Identities=21%  Similarity=0.441  Sum_probs=36.1

Q ss_pred             eEEEEeCcccccCHHHHHHHHHHHhCCCEEEEEEeCccc
Q 021802          250 RIIYIDGAFDLFHAGHVEILRIARGLGDFLLVGIHNDQT  288 (307)
Q Consensus       250 ~~v~~~G~FDl~H~GHi~~L~~a~~~g~~liVgv~~D~~  288 (307)
                      ...++.|.|.+||.||++.+++|.+.+|.|||||.+.+.
T Consensus         5 d~~v~iGRFQPfH~GHl~~I~~al~~~devII~IGSA~~   43 (196)
T PRK13793          5 DYLVFIGRFQPFHLAHMQTIEIALQQSRYVILALGSAQM   43 (196)
T ss_pred             eEEEEEecCCCCcHHHHHHHHHHHHhCCEEEEEEccCCC
Confidence            578889999999999999999999999999999998653

>PRK01153 nicotinamide-nucleotide adenylyltransferase; Provisional

Probab=97.67  E-value=6.8e-05  Score=66.37  Aligned_cols=36  Identities=31%  Similarity=0.497  Sum_probs=32.8

Q ss_pred             EEEEeCcccccCHHHHHHHHHHHhCCCEEEEEEeCc
Q 021802          251 IIYIDGAFDLFHAGHVEILRIARGLGDFLLVGIHND  286 (307)
Q Consensus       251 ~v~~~G~FDl~H~GHi~~L~~a~~~g~~liVgv~~D  286 (307)
                      .+++.|.||+||.||+.++++|.+.+|.|+|++.+.
T Consensus         2 ~gl~~G~F~P~H~GHl~~i~~a~~~~d~v~v~i~s~   37 (174)
T PRK01153          2 RALFIGRFQPFHKGHLEVIKWILEEVDELIIGIGSA   37 (174)
T ss_pred             EEEEeeccCCCCHHHHHHHHHHHHhCCEEEEEecCC
Confidence            467899999999999999999999999999999643

>COG1323 Predicted nucleotidyltransferase [General function prediction only]

Probab=97.63  E-value=0.00014  Score=71.22  Aligned_cols=87  Identities=24%  Similarity=0.392  Sum_probs=64.1

Q ss_pred             cccCcCCHHHHHHHHHHHHc--CCeEEEEEeCChhhhhcCC-CCCCCHHHHHHHHHHccCccEEEEcCCCccc---HHHH
Q 021802           58 GCFDMMHYGHCNALRQARAL--GDQLVVGVVSDAEIIANKG-PPVTPLHERMIMVNAVKWVDEVISDAPYAIT---KDFM  131 (307)
Q Consensus        58 G~FD~lH~GH~~lL~qAk~~--gd~LiVgV~sD~~i~~~Kg-~pi~s~eER~~ll~~~k~VD~Vv~~~py~~t---~dfl  131 (307)
                      =-||++|.||+-+|++|+++  +|..++++.-| ..  ..| +.+.+-.+|.++..+. ++|.|++ .|+..+   .++.
T Consensus         8 ~eyNPfHnGH~y~i~~Ar~~~~~d~~i~~msgd-f~--qRgepai~~k~~r~~~aL~~-g~D~VIe-lP~~~s~q~a~~f   82 (358)
T COG1323           8 AEYNPFHNGHQYHINKAREEFKGDEIIAVMSGD-FT--QRGEPAIGHKWERKKMALEG-GADLVIE-LPLERSGQGAPYF   82 (358)
T ss_pred             eecCcccccHHHHHHHHHHhccCCceEEeeecc-hh--hcCCCccccHHHHHhhhhhc-CceEEEE-cceEEecCCCchh
Confidence            35999999999999999984  35555555444 22  234 7899999999999997 9999999 887532   2332


Q ss_pred             H----HHHHhcCccEEEEcCCC
Q 021802          132 K----KLFDEYNIDYIIHGDDP  149 (307)
Q Consensus       132 e----~ll~~l~~d~VV~GdD~  149 (307)
                      .    .++..+++|.|+.|-..
T Consensus        83 a~~av~il~~l~~~~i~fgse~  104 (358)
T COG1323          83 ATRAVRILNALGGDDIAFGSPP  104 (358)
T ss_pred             hHHHHHHHHhcCCCeEEEeCCC
Confidence            1    25677889888887654

>TIGR00339 sopT ATP sulphurylase

Probab=97.47  E-value=0.0054  Score=60.76  Aligned_cols=94  Identities=20%  Similarity=0.209  Sum_probs=64.9

Q ss_pred             eEEEEecccCcCCHHHHHHHHHHHHc--CCeEEEEEeCChhhhhcCCCCCCCHHHHHHHHHHcc-Cc---cEEEE-cCCC
Q 021802           52 VRVYMDGCFDMMHYGHCNALRQARAL--GDQLVVGVVSDAEIIANKGPPVTPLHERMIMVNAVK-WV---DEVIS-DAPY  124 (307)
Q Consensus        52 ~~V~~~G~FD~lH~GH~~lL~qAk~~--gd~LiVgV~sD~~i~~~Kg~pi~s~eER~~ll~~~k-~V---D~Vv~-~~py  124 (307)
                      .+|+..=+||++|.||..++++|.+.  .|.|++-+.--+    .| +-..+.+-|+++++.+. +.   +.+++ -.|+
T Consensus       184 ~~Vvafqt~nPiHr~H~~l~~~a~e~l~~d~lll~P~~g~----~k-~~~~~~~~R~~~~~~~~~~~~~~~~~~l~~~~~  258 (383)
T TIGR00339       184 DTVVAFQTRNPMHRAHEELTKRAARSLPNAGVLVHPLVGL----TK-PGDIPAEVRMRAYEVLKEGYPNPERVMLTFLPL  258 (383)
T ss_pred             CeEEEeccCCCCchHHHHHHHHHHHHcCCCeEEEEeCCCC----CC-CCCCCHHHHHHHHHHHHhhCCCCCceEEEecch
Confidence            35888999999999999999999997  677765443332    23 36788999999988742 22   23322 1333


Q ss_pred             cc----cHHHHHH--HHHhcCccEEEEcCCCC
Q 021802          125 AI----TKDFMKK--LFDEYNIDYIIHGDDPC  150 (307)
Q Consensus       125 ~~----t~dfle~--ll~~l~~d~VV~GdD~~  150 (307)
                      ..    +.+.+..  +.+.|+|.++++|.|..
T Consensus       259 em~~agpreall~Aiir~nyG~th~IiG~Dha  290 (383)
T TIGR00339       259 AMRYAGPREAIWHAIIRKNYGATHFIVGRDHA  290 (383)
T ss_pred             HhhcCCcHHHHHHHHHHHHCCCCEEEECCCCC
Confidence            21    2345544  45669999999999975

Members of this family also include the dissimilatory sulfate adenylyltransferase (sat) of the sulfate reducer Archaeoglobus fulgidus.

>KOG3351 consensus Predicted nucleotidyltransferase [General function prediction only]

Probab=97.43  E-value=0.00011  Score=68.24  Aligned_cols=49  Identities=33%  Similarity=0.651  Sum_probs=41.5

Q ss_pred             CCCCCCCeEEEEeCcccccCHHHHHHHHHHHhCC-CEEEEEEeCcccccc
Q 021802          243 KGPGPDARIIYIDGAFDLFHAGHVEILRIARGLG-DFLLVGIHNDQTVRL  291 (307)
Q Consensus       243 ~~~~~~~~~v~~~G~FDl~H~GHi~~L~~a~~~g-~~liVgv~~D~~v~~  291 (307)
                      .+|..+-.++.+.|+||-+|.||--+|..|..++ |.|||||++|+-..+
T Consensus       136 ~~~a~~~~~~alGGTFDrLH~gHKvLLs~aa~la~~~lVvGV~d~elL~k  185 (293)
T KOG3351|consen  136 SGPANKFMVVALGGTFDRLHDGHKVLLSVAAELASDRLVVGVTDDELLKK  185 (293)
T ss_pred             ccchhcceeEEeccchhhhccchHHHHHHHHHHhhceEEEEecChHHHHH
Confidence            4444445789999999999999999999999886 899999999987754

>TIGR00124 cit_ly_ligase [citrate (pro-3S)-lyase] ligase

Probab=97.38  E-value=0.00023  Score=69.14  Aligned_cols=39  Identities=23%  Similarity=0.233  Sum_probs=35.9

Q ss_pred             CCCeEEEEeCcccccCHHHHHHHHHHHhCCCEEEEEEeC
Q 021802          247 PDARIIYIDGAFDLFHAGHVEILRIARGLGDFLLVGIHN  285 (307)
Q Consensus       247 ~~~~~v~~~G~FDl~H~GHi~~L~~a~~~g~~liVgv~~  285 (307)
                      ++++++.+.|+||+||.||+.+.++|.+++|.++|+|-.
T Consensus       137 ~~~~i~~~~g~fdP~t~GH~~li~~A~~~~d~~~v~v~~  175 (332)
T TIGR00124       137 PGNKIGSIVMNANPFTNGHRYLIEQAARQCDWLHLFVVK  175 (332)
T ss_pred             CCCcEEEEEeCcCCCchHHHHHHHHHHHHCCEEEEEEEe
Confidence            346999999999999999999999999999999999864

ATP is cleaved to AMP and pyrophosphate during the reaction. The carboxyl end is homologous to a number of cytidyltransferases that also release pyrophosphate.

>PRK08099 bifunctional DNA-binding transcriptional repressor/ NMN adenylyltransferase; Provisional

Probab=97.37  E-value=0.0002  Score=71.14  Aligned_cols=40  Identities=28%  Similarity=0.291  Sum_probs=36.8

Q ss_pred             CCeEEEEeCcccccCHHHHHHHHHHHhCCCEEEEEEeCcc
Q 021802          248 DARIIYIDGAFDLFHAGHVEILRIARGLGDFLLVGIHNDQ  287 (307)
Q Consensus       248 ~~~~v~~~G~FDl~H~GHi~~L~~a~~~g~~liVgv~~D~  287 (307)
                      ..+++++.|.||++|.||+.++++|.+.+|.|+|+|.++.
T Consensus        51 ~~~~~v~~G~FdP~H~GH~~lI~~A~~~~d~l~v~v~~~~   90 (399)
T PRK08099         51 MKKIGVVFGKFYPLHTGHIYLIQRACSQVDELHIIICYDD   90 (399)
T ss_pred             cCcEEEEEEecCCCCHHHHHHHHHHHHHCCeeEEEEEccC
Confidence            3578999999999999999999999999999999998875

>PRK00071 nadD nicotinic acid mononucleotide adenylyltransferase; Provisional

Probab=97.34  E-value=0.00033  Score=62.89  Aligned_cols=39  Identities=28%  Similarity=0.224  Sum_probs=33.5

Q ss_pred             CeEEEEeCcccccCHHHHHHHHHHHhCC--CEEEEEEeCcc
Q 021802          249 ARIIYIDGAFDLFHAGHVEILRIARGLG--DFLLVGIHNDQ  287 (307)
Q Consensus       249 ~~~v~~~G~FDl~H~GHi~~L~~a~~~g--~~liVgv~~D~  287 (307)
                      +++++..|+||.+|.||+.++++|++..  |.+++..+...
T Consensus         4 ~~i~i~gGsFdP~H~GH~~l~~~a~~~~~~d~v~~~p~~~~   44 (203)
T PRK00071          4 KRIGLFGGTFDPPHYGHLAIAEEAAERLGLDEVWFLPNPGP   44 (203)
T ss_pred             cEEEEEeeCCCccCHHHHHHHHHHHHHcCCCEEEEEeCCCC
Confidence            5799999999999999999999999765  77877777554

>COG1056 NadR Nicotinamide mononucleotide adenylyltransferase [Coenzyme metabolism]

Probab=97.12  E-value=0.00076  Score=59.82  Aligned_cols=42  Identities=24%  Similarity=0.271  Sum_probs=38.5

Q ss_pred             CCeEEEEeCcccccCHHHHHHHHHHHhCCCEEEEEEeCcccc
Q 021802          248 DARIIYIDGAFDLFHAGHVEILRIARGLGDFLLVGIHNDQTV  289 (307)
Q Consensus       248 ~~~~v~~~G~FDl~H~GHi~~L~~a~~~g~~liVgv~~D~~v  289 (307)
                      +++..++-|.|-+||.||++.+++|.+.-|.|||+|-+|+.-
T Consensus         2 ~~~rgv~~GRFqP~H~GHl~vi~~al~~vDeliI~iGSa~~~   43 (172)
T COG1056           2 RMKRGVYFGRFQPLHTGHLYVIKRALSKVDELIIVIGSAQES   43 (172)
T ss_pred             CceEEEEEeccCCccHhHHHHHHHHHHhCCEEEEEEccCccc
Confidence            367889999999999999999999999999999999998644

>PRK07143 hypothetical protein; Provisional

Probab=97.02  E-value=0.0011  Score=62.97  Aligned_cols=39  Identities=26%  Similarity=0.583  Sum_probs=35.6

Q ss_pred             CeEEEEeCcccccCHHHHHHHHHHHhCCCEEEEEEeCcc
Q 021802          249 ARIIYIDGAFDLFHAGHVEILRIARGLGDFLLVGIHNDQ  287 (307)
Q Consensus       249 ~~~v~~~G~FDl~H~GHi~~L~~a~~~g~~liVgv~~D~  287 (307)
                      .+.+++-|.||-+|.||..+|++|++.++.++|...++.
T Consensus        15 ~~~vvaiG~FDGvH~GHq~Ll~~a~~~~~~~vV~tF~~P   53 (279)
T PRK07143         15 EKPTFVLGGFESFHLGHLELFKKAKESNDEIVIVIFKNP   53 (279)
T ss_pred             CCeEEEEccCCcCCHHHHHHHHHHHHCCCcEEEEEeCCh
Confidence            567999999999999999999999999999999888763

>PRK05627 bifunctional riboflavin kinase/FMN adenylyltransferase; Reviewed

Probab=96.78  E-value=0.0011  Score=63.72  Aligned_cols=38  Identities=26%  Similarity=0.301  Sum_probs=31.2

Q ss_pred             EEEEeCcccccCHHHHHHHHHHHhCCCEE---EEEEeCccc
Q 021802          251 IIYIDGAFDLFHAGHVEILRIARGLGDFL---LVGIHNDQT  288 (307)
Q Consensus       251 ~v~~~G~FDl~H~GHi~~L~~a~~~g~~l---iVgv~~D~~  288 (307)
                      .|++.|+||.+|.||.++|++|++.++.+   .+.++-|..
T Consensus        15 ~vv~iG~FDGvH~GHq~Ll~~a~~~a~~~~~~~~vitFd~~   55 (305)
T PRK05627         15 CVLTIGNFDGVHRGHQALLARAREIARERGLPSVVMTFEPH   55 (305)
T ss_pred             EEEEEeeCCcCCHHHHHHHHHHHHHHHhcCCCEEEEEecCC
Confidence            79999999999999999999999988654   345555543

>PRK08887 nicotinic acid mononucleotide adenylyltransferase; Provisional

Probab=96.69  E-value=0.0025  Score=56.33  Aligned_cols=36  Identities=19%  Similarity=0.210  Sum_probs=29.8

Q ss_pred             CeEEEEeCcccccCHHHHHHHHHHHhCCCEEEEEEeC
Q 021802          249 ARIIYIDGAFDLFHAGHVEILRIARGLGDFLLVGIHN  285 (307)
Q Consensus       249 ~~~v~~~G~FDl~H~GHi~~L~~a~~~g~~liVgv~~  285 (307)
                      +++++.+|+||++|.||+.+.++++ .-|.|++..+.
T Consensus         2 ~~i~ifGGSFDP~H~GHl~ia~~~~-~~d~v~~vP~~   37 (174)
T PRK08887          2 KKIAVFGSAFNPPSLGHKSVIESLS-HFDLVLLVPSI   37 (174)
T ss_pred             CeEEEeCCCCCCCCHHHHHHHHHhh-cCCEEEEEECC
Confidence            3688999999999999999999964 56888877543

>COG3053 CitC Citrate lyase synthetase [Energy production and conversion]

Probab=96.42  E-value=0.039  Score=52.93  Aligned_cols=127  Identities=21%  Similarity=0.201  Sum_probs=82.6

Q ss_pred             EEEEecccCcCCHHHHHHHHHHHHcCCeEEEEEeCChhhhhcCCCCCCCHHHHHHHHHH-ccCccEE---------EEcC
Q 021802           53 RVYMDGCFDMMHYGHCNALRQARALGDQLVVGVVSDAEIIANKGPPVTPLHERMIMVNA-VKWVDEV---------ISDA  122 (307)
Q Consensus        53 ~V~~~G~FD~lH~GH~~lL~qAk~~gd~LiVgV~sD~~i~~~Kg~pi~s~eER~~ll~~-~k~VD~V---------v~~~  122 (307)
                      +.-+.=+=+++.+||+-|++||.+.||.|.+=|.++.       .-.+|.++|.++++. .+..+.+         +-.+
T Consensus       147 IgaIVMNANPFTLGH~YLVEqAaaqcDwlHLFvV~eD-------~S~f~y~~R~~Lv~~G~~~l~Nvt~HsgsdYiISrA  219 (352)
T COG3053         147 IGAIVMNANPFTLGHRYLVEQAAAQCDWLHLFVVKED-------SSLFPYEDRLDLVKKGTADLPNVTVHSGSDYIISRA  219 (352)
T ss_pred             eEEEEEeCCCccchhHHHHHHHHhhCCEEEEEEEecc-------cccCCHHHHHHHHHHhhccCCceEEecCCCeEEEec
Confidence            4555557899999999999999999999755444432       256899999999877 5555544         3333


Q ss_pred             CCc---c-------------cHH-HHHHHHHhcCccEEEEcCCCCcCCCCCchH-----HHHHhC------CEEEEcCCC
Q 021802          123 PYA---I-------------TKD-FMKKLFDEYNIDYIIHGDDPCVLPDGTDAY-----ELAKKA------GRYKQIKRT  174 (307)
Q Consensus       123 py~---~-------------t~d-fle~ll~~l~~d~VV~GdD~~fg~~g~d~y-----~~lk~~------g~v~vv~rt  174 (307)
                      -|-   +             +.. |-+.+...+++..-.+|..+.---  ...|     .++...      ..+++++|.
T Consensus       220 TFP~YFiKeq~vv~~s~t~iDl~iFr~~iA~aLgIThRfVG~EP~c~v--T~~YNq~M~~~L~~~~~~~p~I~vvei~Rk  297 (352)
T COG3053         220 TFPAYFIKEQSVVNDSQTEIDLKIFRKYIAPALGITHRFVGTEPFCRV--TAIYNQQMRYWLEDPTISAPPIEVVEIERK  297 (352)
T ss_pred             ccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHhCcceeeecCCCCcHH--HHHHHHHHHHHHhccCCCCCceEEEEeehh
Confidence            320   0             011 222244557888888998864210  1223     234432      357788885


Q ss_pred             ----CCCCHHHHHHHHHh
Q 021802          175 ----EGVSSTDIVGRMLL  188 (307)
Q Consensus       175 ----~~VSST~Ir~rIl~  188 (307)
                          ..||.|..|+.+..
T Consensus       298 ~~~~~~ISAS~VR~~l~~  315 (352)
T COG3053         298 KYQEMPISASRVRQLLAK  315 (352)
T ss_pred             hhcCCcccHHHHHHHHHh
Confidence                47999999998863

>cd02169 Citrate_lyase_ligase Citrate lyase ligase

Probab=96.34  E-value=0.0051  Score=58.93  Aligned_cols=38  Identities=18%  Similarity=0.189  Sum_probs=34.7

Q ss_pred             CCeEEEEeCcccccCHHHHHHHHHHHhCCCEEEEEEeC
Q 021802          248 DARIIYIDGAFDLFHAGHVEILRIARGLGDFLLVGIHN  285 (307)
Q Consensus       248 ~~~~v~~~G~FDl~H~GHi~~L~~a~~~g~~liVgv~~  285 (307)
                      .++++-+-|+||++|.||+.++++|.+..|.++|.+-+
T Consensus       113 ~~~~~~~~~~FDPiH~GHl~ii~~a~~~~d~~~V~i~~  150 (297)
T cd02169         113 GKKIAAIVMNANPFTLGHRYLVEKAAAENDWVHLFVVS  150 (297)
T ss_pred             CCceEEEEecCCCCchHHHHHHHHHHhhCCeEEEEEEc
Confidence            46899999999999999999999999999988888865

Citrate lyase ligase, also known as [Citrate (pro-3S)-lyase] ligase, is responsible for acetylation of the (2-(5''-phosphoribosyl)-3'-dephosphocoenzyme-A) prosthetic group of the gamma subunit of citrate lyase, converting the inactive thiol form of this enzyme to the active form. The acetylation of 1 molecule of deacetyl-citrate lyase to enzymatically active citrate lyase requires 6 molecules of ATP. The Adenylylyltranferase activity of the enzyme involves the formation of AMP and and pyrophosphate in the acetylation reaction.

>PF02569 Pantoate_ligase: Pantoate-beta-alanine ligase; InterPro: IPR003721 D-Pantothenate is synthesized via four enzymes from ketoisovalerate, which is an intermediate of branched-chain amino acid synthesis []

Probab=95.88  E-value=0.024  Score=53.98  Aligned_cols=76  Identities=22%  Similarity=0.291  Sum_probs=44.5

Q ss_pred             hHhhhcCCCCeEEEEecccCcCCHHHHHHHHHHHHcCCeEEEEEeCChhhhhcCC---CCCCCHHHHHHHHHHccCccEE
Q 021802           42 LQWTRKKKKPVRVYMDGCFDMMHYGHCNALRQARALGDQLVVGVVSDAEIIANKG---PPVTPLHERMIMVNAVKWVDEV  118 (307)
Q Consensus        42 ~~~~~~~~~~~~V~~~G~FD~lH~GH~~lL~qAk~~gd~LiVgV~sD~~i~~~Kg---~pi~s~eER~~ll~~~k~VD~V  118 (307)
                      .+.++..+++  +-..-+-=-+|-||+.|+++|++.+|.++|.+.-+|.=...+.   ...-+.+.=.+++++. +||.+
T Consensus        14 ~~~~~~~~~~--igfVPTMGaLHeGHlsLi~~A~~~~d~vVVSIFVNP~QF~~~eD~~~YPR~~e~D~~ll~~~-gvD~v   90 (280)
T PF02569_consen   14 IRAWRKAGKT--IGFVPTMGALHEGHLSLIRRARAENDVVVVSIFVNPTQFGPNEDFDKYPRTLERDLELLEKA-GVDAV   90 (280)
T ss_dssp             HHHHHHTTSS--EEEEEE-SS--HHHHHHHHHHHHHSSEEEEEE---GGGSSTTSHTTTS---HHHHHHHHHHT-T-SEE
T ss_pred             HHHHHHcCCe--EEEECCCchhhHHHHHHHHHHHhCCCEEEEEECcCcccCCCcchhhhCCCChHHHHHHHhcc-CCCEE
Confidence            3344444443  3333344457999999999999999999999877763211121   3445677888889997 99988


Q ss_pred             EE
Q 021802          119 IS  120 (307)
Q Consensus       119 v~  120 (307)
                      +.
T Consensus        91 F~   92 (280)
T PF02569_consen   91 FA   92 (280)
T ss_dssp             E-
T ss_pred             Ec
Confidence            76

Pantoate-beta-alanine ligase, also know as pantothenate synthase, (6.3.2.1 from EC) catalyzes the formation of pantothenate from pantoate and alanine in the pantothenate biosynthesis pathway [].; GO: 0004592 pantoate-beta-alanine ligase activity, 0015940 pantothenate biosynthetic process; PDB: 3MUE_C 1V8F_B 1UFV_A 2X3F_B 1MOP_A 3COY_B 3IOC_A 1N2E_A 3IVX_A 1N2H_A ....

>PRK06973 nicotinic acid mononucleotide adenylyltransferase; Provisional

Probab=95.81  E-value=0.013  Score=54.54  Aligned_cols=38  Identities=26%  Similarity=0.344  Sum_probs=31.8

Q ss_pred             CeEEEEeCcccccCHHHHHHHHHHHhCC--CEEEEEEeCc
Q 021802          249 ARIIYIDGAFDLFHAGHVEILRIARGLG--DFLLVGIHND  286 (307)
Q Consensus       249 ~~~v~~~G~FDl~H~GHi~~L~~a~~~g--~~liVgv~~D  286 (307)
                      ++|++..|+||..|.||+.+.++|.+..  |.+++.-+.+
T Consensus        22 ~~IgifGGSFdPiH~GHl~ia~~~~~~l~ld~v~~iP~~~   61 (243)
T PRK06973         22 RRIGILGGTFDPIHDGHLALARRFADVLDLTELVLIPAGQ   61 (243)
T ss_pred             ceEEEECCCCCCCcHHHHHHHHHHHHHcCCCEEEEEECCc
Confidence            5799999999999999999999998753  7777766554

>PF01747 ATP-sulfurylase: ATP-sulfurylase; InterPro: IPR002650 This entry consists of sulphate adenylyltransferase or ATP-sulfurylase (2

Probab=95.59  E-value=0.29  Score=44.96  Aligned_cols=105  Identities=18%  Similarity=0.208  Sum_probs=60.6

Q ss_pred             HHhHhhhcCCCCeEEEEecccCcCCHHHHHHHHHHHHcC-CeEEEEEeCChhhhhcCCCCCCCHHHHHHHHHHcc----C
Q 021802           40 RWLQWTRKKKKPVRVYMDGCFDMMHYGHCNALRQARALG-DQLVVGVVSDAEIIANKGPPVTPLHERMIMVNAVK----W  114 (307)
Q Consensus        40 ~~~~~~~~~~~~~~V~~~G~FD~lH~GH~~lL~qAk~~g-d~LiVgV~sD~~i~~~Kg~pi~s~eER~~ll~~~k----~  114 (307)
                      ++...+++.+.+. |++.=+=+++|.+|..++++|.+.+ +.|++-..-.+    .| +--++.+-|++..+.+.    -
T Consensus        10 e~r~~~~~~gw~~-VvafqtrnPlHraHe~l~~~a~e~~~~~lll~plvG~----~k-~~d~~~~~r~~~~~~~~~~y~p   83 (215)
T PF01747_consen   10 ETRELFKEKGWRR-VVAFQTRNPLHRAHEYLMRRALEKAGDGLLLHPLVGP----TK-PGDIPYEVRVRCYEALIDNYFP   83 (215)
T ss_dssp             HHHHHHHHTT-SS-EEEEEESS---HHHHHHHHHHHHHHTSEEEEEEBESB-----S-TTSCCHHHHHHHHHHHHHHCSS
T ss_pred             HHHHHHHhcCCCe-EEEEEeCCCCCHHHHHHHHHHHHHhcCcEEEEeccCC----CC-cCCCCHHHHHHHHHHHHHHhCC
Confidence            4444555555443 6666669999999999999999986 76654321111    12 34577888888766632    1


Q ss_pred             ccEEEEcCCCcc-------cHHHHHHHH-HhcCccEEEEcCCCCc
Q 021802          115 VDEVISDAPYAI-------TKDFMKKLF-DEYNIDYIIHGDDPCV  151 (307)
Q Consensus       115 VD~Vv~~~py~~-------t~dfle~ll-~~l~~d~VV~GdD~~f  151 (307)
                      -+.+++ .++..       .+.-+..++ +.++|..+++|.|+.-
T Consensus        84 ~~~v~l-~~lp~~mr~aGPrEallhAiirkN~GcTh~IvGrdhAg  127 (215)
T PF01747_consen   84 KNRVLL-SPLPLPMRYAGPREALLHAIIRKNYGCTHFIVGRDHAG  127 (215)
T ss_dssp             TTGEEE-EBBESB---SHHHHHHHHHHHHHHTT-SEEEE-TTTT-
T ss_pred             CCcEEE-eccCchhcccCcHHHHHHHHHHHHCCCceEEeCCcCCC
Confidence            355655 33321       234445544 4599999999999863

7.7.4 from EC) some of which are part of a bifunctional polypeptide chain associated with adenosyl phosphosulphate (APS) kinase, IPR002891 from INTERPRO. Both enzymes are required for PAPS (phosphoadenosine-phosphosulphate) synthesis from inorganic sulphate []. ATP sulfurylase catalyses the synthesis of adenosine-phosphosulphate APS from ATP and inorganic sulphate [].; GO: 0004781 sulfate adenylyltransferase (ATP) activity, 0000103 sulfate assimilation; PDB: 3CR8_B 1M8P_C 1I2D_B 1JHD_A 1V47_B 1X6V_B 1XNJ_A 1XJQ_B 2QJF_A 2GKS_B ....

>cd00517 ATPS ATP-sulfurylase

Probab=95.41  E-value=0.72  Score=45.40  Aligned_cols=94  Identities=19%  Similarity=0.200  Sum_probs=61.8

Q ss_pred             eEEEEecccCcCCHHHHHHHHHHHHcC--CeEEEEEeCChhhhhcCCCCCCCHHHHHHHHHHcc--Cc--cEEEE-cCCC
Q 021802           52 VRVYMDGCFDMMHYGHCNALRQARALG--DQLVVGVVSDAEIIANKGPPVTPLHERMIMVNAVK--WV--DEVIS-DAPY  124 (307)
Q Consensus        52 ~~V~~~G~FD~lH~GH~~lL~qAk~~g--d~LiVgV~sD~~i~~~Kg~pi~s~eER~~ll~~~k--~V--D~Vv~-~~py  124 (307)
                      ++|++.=+-+++|.||..+++.|.+.+  +.|++  ++  .+- .+.+-=++.+-|++..+.+.  +.  |.+++ ..|+
T Consensus       157 ~~VvafqtrnP~HraHe~l~~~a~~~~~~~~lll--~p--lvG-~~k~~d~~~~~r~~~~~~l~~~y~~~~~~~l~~lp~  231 (353)
T cd00517         157 RRVVAFQTRNPMHRAHEELMKRAAEKLLNDGLLL--HP--LVG-WTKPGDVPDEVRMRAYEALLEEYYLPERTVLAILPL  231 (353)
T ss_pred             CeEEEeecCCCCchhhHHHHHHHHHHcCCCcEEE--Ee--ccC-CCCCCCCCHHHHHHHHHHHHHhCCCCCcEEEEeccc
Confidence            358888999999999999999999977  44443  22  111 11134577888888776642  33  66655 1232


Q ss_pred             c-----ccHHHHHHHH-HhcCccEEEEcCCCC
Q 021802          125 A-----ITKDFMKKLF-DEYNIDYIIHGDDPC  150 (307)
Q Consensus       125 ~-----~t~dfle~ll-~~l~~d~VV~GdD~~  150 (307)
                      .     ..+.-+..++ +.++|..+++|-|+.
T Consensus       232 ~mryAGPrEallhAiirkN~GcThfIvGrDHA  263 (353)
T cd00517         232 PMRYAGPREALWHAIIRKNYGATHFIVGRDHA  263 (353)
T ss_pred             hhcccCcHHHHHHHHHHHhCCCCeEEECCCCC
Confidence            2     1244455544 459999999999975

ATP-sulfurylase (ATPS), also known as sulfate adenylate transferase, catalyzes the transfer of an adenylyl group from ATP to sulfate, forming adenosine 5'-phosphosulfate (APS). This reaction is generally accompanied by a further reaction, catalyzed by APS kinase, in which APS is phosphorylated to yield 3'-phospho-APS (PAPS). In some organisms the APS kinase is a separate protein, while in others it is incorporated with ATP sulfurylase in a bifunctional enzyme that catalyzes both reactions. In bifunctional proteins, the domain that performs the kinase activity can be attached at the N-terminal end of the sulfurylase unit or at the C-terminal end, depending on the organism. While the reaction is ubiquitous among organisms, the physiological role of the reaction varies. In some organisms it is used to generate APS from sulfate and ATP, while in others it proceeds in the opposite direction to generate ATP from APS and pyrophosphate. ATP sulfurylase can be

>COG1057 NadD Nicotinic acid mononucleotide adenylyltransferase [Coenzyme metabolism]

Probab=95.41  E-value=0.028  Score=50.92  Aligned_cols=39  Identities=26%  Similarity=0.192  Sum_probs=30.9

Q ss_pred             CCeEEEEeCcccccCHHHHHHHHHHHhCC--CEEEEEEeCc
Q 021802          248 DARIIYIDGAFDLFHAGHVEILRIARGLG--DFLLVGIHND  286 (307)
Q Consensus       248 ~~~~v~~~G~FDl~H~GHi~~L~~a~~~g--~~liVgv~~D  286 (307)
                      .+++++..|+||+.|.||+.+.++|.+.-  |.|+.-.+..
T Consensus         2 ~~~i~lfGGsFdP~H~GHl~ia~~~~~~l~ld~vi~~ps~~   42 (197)
T COG1057           2 MKKIALFGGSFDPPHYGHLLIAEEALDQLGLDKVIFLPSPV   42 (197)
T ss_pred             CceEEEeccCCCCCCHHHHHHHHHHHHhcCCCeEEEecCCC
Confidence            46899999999999999999999988653  5655544433

>PRK04149 sat sulfate adenylyltransferase; Reviewed

Probab=95.17  E-value=0.99  Score=45.06  Aligned_cols=93  Identities=18%  Similarity=0.116  Sum_probs=62.4

Q ss_pred             eEEEEecccCcCCHHHHHHHHHHHHcCCeEEEEEeCChhhhhcCCCCCCCHHHHHHHHHHcc----CccEEEEcCCCc--
Q 021802           52 VRVYMDGCFDMMHYGHCNALRQARALGDQLVVGVVSDAEIIANKGPPVTPLHERMIMVNAVK----WVDEVISDAPYA--  125 (307)
Q Consensus        52 ~~V~~~G~FD~lH~GH~~lL~qAk~~gd~LiVgV~sD~~i~~~Kg~pi~s~eER~~ll~~~k----~VD~Vv~~~py~--  125 (307)
                      .+|++.=+-+++|.||..+++.|.+.+|-|++  |+  .+-..| +-=++.+-|++..+.+.    --+.+++ .++-  
T Consensus       187 ~~VvafqTrnP~HraHe~l~~~a~e~~d~lll--~p--lvG~~k-~~di~~~~r~~~~~~~~~~y~p~~~v~l-~~lp~~  260 (391)
T PRK04149        187 KTVVAFQTRNPPHRAHEYLQKCALEIVDGLLL--NP--LVGETK-SGDIPAEVRMEAYEALLKNYYPKDRVLL-SVTPAA  260 (391)
T ss_pred             CeEEEeecCCCCchHHHHHHHHHHHhcCeEEE--ec--CcCCCC-CCCCCHHHHHHHHHHHHHhcCCCCcEEE-Eeccch
Confidence            46888889999999999999999999985554  22  111111 34577888988877742    1245544 3331  


Q ss_pred             -----ccHHHHHHHH-HhcCccEEEEcCCCC
Q 021802          126 -----ITKDFMKKLF-DEYNIDYIIHGDDPC  150 (307)
Q Consensus       126 -----~t~dfle~ll-~~l~~d~VV~GdD~~  150 (307)
                           ..+.-+..++ +.++|..+++|-|+.
T Consensus       261 mryAGPrEa~lhAivrkN~GcTh~IvGrDHA  291 (391)
T PRK04149        261 MRYAGPREAIFHAIVRKNYGCTHFIVGRDHA  291 (391)
T ss_pred             hcccCcHHHHHHHHHHHhCCCCeEEECCCCC
Confidence                 1244455544 459999999999975

>PLN02945 nicotinamide-nucleotide adenylyltransferase/nicotinate-nucleotide adenylyltransferase

Probab=95.01  E-value=0.024  Score=52.32  Aligned_cols=29  Identities=17%  Similarity=0.314  Sum_probs=23.3

Q ss_pred             CCCeEEEEeCcccccCHHHHHHHHHHHhC
Q 021802          247 PDARIIYIDGAFDLFHAGHVEILRIARGL  275 (307)
Q Consensus       247 ~~~~~v~~~G~FDl~H~GHi~~L~~a~~~  275 (307)
                      +...+.+..|+||+.|.||+.+.+.|++.
T Consensus        20 ~~~~v~i~GGSFdP~H~gHl~ia~~a~~~   48 (236)
T PLN02945         20 RTRVVLVATGSFNPPTYMHLRMFELARDA   48 (236)
T ss_pred             CceEEEEEcCCCCCCcHHHHHHHHHHHHH
Confidence            33456667889999999999999888754

>COG0414 PanC Panthothenate synthetase [Coenzyme metabolism]

Probab=94.76  E-value=0.19  Score=47.72  Aligned_cols=74  Identities=23%  Similarity=0.257  Sum_probs=51.0

Q ss_pred             hhhcCCCCeEEEEecccCcCCHHHHHHHHHHHHcCCeEEEEEeCChhhh-hcCC--CCCCCHHHHHHHHHHccCccEEEE
Q 021802           44 WTRKKKKPVRVYMDGCFDMMHYGHCNALRQARALGDQLVVGVVSDAEII-ANKG--PPVTPLHERMIMVNAVKWVDEVIS  120 (307)
Q Consensus        44 ~~~~~~~~~~V~~~G~FD~lH~GH~~lL~qAk~~gd~LiVgV~sD~~i~-~~Kg--~pi~s~eER~~ll~~~k~VD~Vv~  120 (307)
                      .+++.+++  |-..=+--.+|-||+.|+++|++.+|.++|.+.-+|.=. .+-.  ...-+.++=.++++.. +||.++.
T Consensus        16 ~~r~~gk~--Vg~VPTMG~LH~GHlsLVr~A~~~~d~VVVSIFVNP~QFg~~EDl~~YPR~l~~D~~~le~~-gvd~vF~   92 (285)
T COG0414          16 ALRKEGKR--VGLVPTMGNLHEGHLSLVRRAKKENDVVVVSIFVNPLQFGPNEDLDRYPRTLERDLELLEKE-GVDIVFA   92 (285)
T ss_pred             HHHHcCCE--EEEEcCCcccchHHHHHHHHHhhcCCeEEEEEEeChhhcCCchhhhhCCCCHHHHHHHHHhc-CCcEEeC
Confidence            44555553  555556667999999999999999999999886666311 1111  2334566666777886 9988876

>PRK13477 bifunctional pantoate ligase/cytidylate kinase; Provisional

Probab=94.68  E-value=0.14  Score=52.70  Aligned_cols=67  Identities=18%  Similarity=0.252  Sum_probs=50.9

Q ss_pred             EEEEecccCcCCHHHHHHHHHHHHcCCeEEEEEeCChh-hhhcCC--CCCCCHHHHHHHHHHccCccEEEE
Q 021802           53 RVYMDGCFDMMHYGHCNALRQARALGDQLVVGVVSDAE-IIANKG--PPVTPLHERMIMVNAVKWVDEVIS  120 (307)
Q Consensus        53 ~V~~~G~FD~lH~GH~~lL~qAk~~gd~LiVgV~sD~~-i~~~Kg--~pi~s~eER~~ll~~~k~VD~Vv~  120 (307)
                      ++-..-+-=.+|-||+.|+++|++.+|.++|.+.-+|. ...+..  ...-+.++=.+++++. +||.|+.
T Consensus        21 ~ig~VPTMG~LH~GHlsLi~~A~~~~d~vVvSIFVNP~QF~~~eD~~~YPr~~~~D~~~l~~~-gvd~vf~   90 (512)
T PRK13477         21 TIGFVPTMGALHQGHLSLIRRARQENDVVLVSIFVNPLQFGPNEDLERYPRTLEADRELCESA-GVDAIFA   90 (512)
T ss_pred             cEEEECCCcchhHHHHHHHHHHHHhCCEEEEEEccCcccCCCchhhhhCCCCHHHHHHHHHhc-CCCEEEC
Confidence            56667777789999999999999999999998866652 111111  3445678888889997 9998866

>PF06574 FAD_syn: FAD synthetase; InterPro: IPR015864 Riboflavin is converted into catalytically active cofactors (FAD and FMN) by the actions of riboflavin kinase (2

Probab=94.58  E-value=0.042  Score=47.81  Aligned_cols=29  Identities=24%  Similarity=0.461  Sum_probs=20.3

Q ss_pred             CCeEEEEeCcccccCHHHHHHHHHHHhCC
Q 021802          248 DARIIYIDGAFDLFHAGHVEILRIARGLG  276 (307)
Q Consensus       248 ~~~~v~~~G~FDl~H~GHi~~L~~a~~~g  276 (307)
                      .++.+++-|.||-+|.||-.++++|.+.+
T Consensus         4 ~~~~~v~iG~FDGvH~GHq~Li~~~~~~a   32 (157)
T PF06574_consen    4 NKKSVVAIGNFDGVHLGHQKLIKKAVEIA   32 (157)
T ss_dssp             -S-EEEEES--TT--HHHHHHHHHHHHHH
T ss_pred             CCCcEEEEeCCCCccHHHHHHHHHHhhhh
Confidence            46889999999999999999999887553

7.1.26 from EC), which converts it into FMN, and FAD synthetase (2.7.7.2 from EC), which adenylates FMN to FAD. Eukaryotes usually have two separate enzymes, while most prokaryotes have a single bifunctional protein that can carry out both catalyses, although exceptions occur in both cases. While eukaryotic monofunctional riboflavin kinase is orthologous to the bifunctional prokaryotic enzyme [], the monofunctional FAD synthetase differs from its prokaryotic counterpart, and is instead related to the PAPS-reductase family []. The bacterial FAD synthetase that is part of the bifunctional enzyme has remote similarity to nucleotidyl transferases and, hence, it may be involved in the adenylylation reaction of FAD synthetases []. This entry represents prokaryotic-type FAD synthetase, which occurs primarily as part of a bifunctional enzyme.; GO: 0003919 FMN adenylyltransferase activity, 0009231 riboflavin biosynthetic process; PDB: 2X0K_B 3OP1_B 1T6Z_A 2I1L_A 1T6Y_B 1T6X_B 1S4M_A 1MRZ_A.

>COG2046 MET3 ATP sulfurylase (sulfate adenylyltransferase) [Inorganic ion transport and metabolism]

Probab=93.97  E-value=1.3  Score=43.79  Aligned_cols=137  Identities=20%  Similarity=0.194  Sum_probs=81.4

Q ss_pred             CCeEEEEecccCcCCHHHHHHHHHHHHcCCeEEEEEeCChhhhhcCCCCCCCHHHHHHHHHHc---cC-ccEEEEc-CCC
Q 021802           50 KPVRVYMDGCFDMMHYGHCNALRQARALGDQLVVGVVSDAEIIANKGPPVTPLHERMIMVNAV---KW-VDEVISD-APY  124 (307)
Q Consensus        50 ~~~~V~~~G~FD~lH~GH~~lL~qAk~~gd~LiVgV~sD~~i~~~Kg~pi~s~eER~~ll~~~---k~-VD~Vv~~-~py  124 (307)
                      +-++|++.=++|++|.||-.+.+.|.+.+|.|+|  |+  .+-..| +-=.+.+-|++..+.+   .+ =|.+++. .|+
T Consensus       182 gwk~vvafQTRNp~HraHEyl~K~Al~~vdgllv--~p--lVG~tk-~gD~~~e~rm~~ye~l~~~Yyp~dr~~Ls~~~~  256 (397)
T COG2046         182 GWKTVVAFQTRNPPHRAHEYLQKRALEKVDGLLV--HP--LVGATK-PGDIPDEVRMEYYEALLKHYYPPDRVFLSVLPA  256 (397)
T ss_pred             CCeEEEEEecCCCchHHHHHHHHHHHHhcCcEEE--Ee--eecccc-CCCchHHHHHHHHHHHHHhCCCCCcEEEEecHH
Confidence            3457999999999999999999999999987554  11  111111 2224566666654442   13 3666662 222


Q ss_pred             cc----c-HHHHHHHHH-hcCccEEEEcCCCCcCCCCCchHH---HHHh----CC-------EEEEcCC-----------
Q 021802          125 AI----T-KDFMKKLFD-EYNIDYIIHGDDPCVLPDGTDAYE---LAKK----AG-------RYKQIKR-----------  173 (307)
Q Consensus       125 ~~----t-~dfle~ll~-~l~~d~VV~GdD~~fg~~g~d~y~---~lk~----~g-------~v~vv~r-----------  173 (307)
                      ..    + +.-+..++. .|+|...++|-|..--.+=-|.|+   +..+    .|       .+..+++           
T Consensus       257 aMRyagPrEa~~HaIIRkNyGcTHfIVGRDHAGvG~yYg~Y~aq~if~~f~~eLgI~p~~f~e~~YC~~c~~~~~~~~cp  336 (397)
T COG2046         257 AMRYAGPREALLHAIIRKNYGCTHFIVGRDHAGVGDYYGPYDAQEIFDEFSPELGITPVFFEEFFYCPKCGQMVSTKTCP  336 (397)
T ss_pred             HhhhcCcHHHHHHHHHHhhcCCeeeeecCCCCCccccCCcccHHHHHHhcccccCcEEEeccceeecccccCCcccccCC
Confidence            11    2 344455554 499999999999873212224443   3322    11       1222222           


Q ss_pred             -C----CCCCHHHHHHHHHhhhh
Q 021802          174 -T----EGVSSTDIVGRMLLCVR  191 (307)
Q Consensus       174 -t----~~VSST~Ir~rIl~~~~  191 (307)
                       +    ..+|.|.+|++|....+
T Consensus       337 h~~~~~~~~SGt~lR~~Lr~G~~  359 (397)
T COG2046         337 HGDEHHLHISGTKLREMLRAGVK  359 (397)
T ss_pred             CCCcceEEEccHHHHHHHHcCCC
Confidence             1    25899999998877765

>COG0414 PanC Panthothenate synthetase [Coenzyme metabolism]

Probab=92.34  E-value=0.092  Score=49.86  Aligned_cols=39  Identities=23%  Similarity=0.440  Sum_probs=32.9

Q ss_pred             CCCeEEEEeCcccccCHHHHHHHHHHHhCCCEEEEEEeCc
Q 021802          247 PDARIIYIDGAFDLFHAGHVEILRIARGLGDFLLVGIHND  286 (307)
Q Consensus       247 ~~~~~v~~~G~FDl~H~GHi~~L~~a~~~g~~liVgv~~D  286 (307)
                      .+++|++|+ +---+|.||+.+.++||+.+|.+||.|.-+
T Consensus        20 ~gk~Vg~VP-TMG~LH~GHlsLVr~A~~~~d~VVVSIFVN   58 (285)
T COG0414          20 EGKRVGLVP-TMGNLHEGHLSLVRRAKKENDVVVVSIFVN   58 (285)
T ss_pred             cCCEEEEEc-CCcccchHHHHHHHHHhhcCCeEEEEEEeC
Confidence            456788885 445689999999999999999999999755

>PF02569 Pantoate_ligase: Pantoate-beta-alanine ligase; InterPro: IPR003721 D-Pantothenate is synthesized via four enzymes from ketoisovalerate, which is an intermediate of branched-chain amino acid synthesis []

Probab=91.71  E-value=0.14  Score=48.86  Aligned_cols=38  Identities=26%  Similarity=0.507  Sum_probs=26.7

Q ss_pred             CCeEEEEeCcccccCHHHHHHHHHHHhCCCEEEEEEeCc
Q 021802          248 DARIIYIDGAFDLFHAGHVEILRIARGLGDFLLVGIHND  286 (307)
Q Consensus       248 ~~~~v~~~G~FDl~H~GHi~~L~~a~~~g~~liVgv~~D  286 (307)
                      +++|++|+= =--+|.||+.++++|++.+|.+||.|.-+
T Consensus        21 ~~~igfVPT-MGaLHeGHlsLi~~A~~~~d~vVVSIFVN   58 (280)
T PF02569_consen   21 GKTIGFVPT-MGALHEGHLSLIRRARAENDVVVVSIFVN   58 (280)
T ss_dssp             TSSEEEEEE--SS--HHHHHHHHHHHHHSSEEEEEE---
T ss_pred             CCeEEEECC-CchhhHHHHHHHHHHHhCCCEEEEEECcC
Confidence            467777741 22259999999999999999999999744

Pantoate-beta-alanine ligase, also know as pantothenate synthase, (6.3.2.1 from EC) catalyzes the formation of pantothenate from pantoate and alanine in the pantothenate biosynthesis pathway [].; GO: 0004592 pantoate-beta-alanine ligase activity, 0015940 pantothenate biosynthetic process; PDB: 3MUE_C 1V8F_B 1UFV_A 2X3F_B 1MOP_A 3COY_B 3IOC_A 1N2E_A 3IVX_A 1N2H_A ....

>PRK05537 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Validated

Probab=91.70  E-value=5.5  Score=41.61  Aligned_cols=94  Identities=14%  Similarity=0.065  Sum_probs=61.4

Q ss_pred             eEEEEecccCcCCHHHHHHHHHHHHcCCeEEEEEeCChhhhhcCCCCCCCHHHHHHHHHHcc---CccEEEEcCCCc---
Q 021802           52 VRVYMDGCFDMMHYGHCNALRQARALGDQLVVGVVSDAEIIANKGPPVTPLHERMIMVNAVK---WVDEVISDAPYA---  125 (307)
Q Consensus        52 ~~V~~~G~FD~lH~GH~~lL~qAk~~gd~LiVgV~sD~~i~~~Kg~pi~s~eER~~ll~~~k---~VD~Vv~~~py~---  125 (307)
                      .+|+..=+-+++|.+|..+++.|.+.+|..+ -+++  .+-..| +--++.+-|++..+.+.   --|.+++ .+|-   
T Consensus       187 ~~v~afqtrnP~Hr~He~l~~~a~~~~d~~l-ll~p--~~G~~k-~~d~~~~~r~~~~~~~~~~~p~~~~~l-~~~p~~m  261 (568)
T PRK05537        187 RRVVAFQTRNPLHRAHEELTKRAAREVGANL-LIHP--VVGMTK-PGDIDHFTRVRCYEALLDKYPPATTLL-SLLPLAM  261 (568)
T ss_pred             CcEEEEecCCCCcHHHHHHHHHHHHhcCCeE-EEec--CCCCCC-CCCCCHHHHHHHHHHHHHhCCCCcEEE-Eeccchh
Confidence            4588888999999999999999999887322 2333  111111 34577888888766632   2355544 3321   


Q ss_pred             ----ccHHHHHHHH-HhcCccEEEEcCCCC
Q 021802          126 ----ITKDFMKKLF-DEYNIDYIIHGDDPC  150 (307)
Q Consensus       126 ----~t~dfle~ll-~~l~~d~VV~GdD~~  150 (307)
                          ..+.-+..++ +.++|.+.++|-|+.
T Consensus       262 ryaGpreai~hAi~r~N~Gcth~ivGrdhA  291 (568)
T PRK05537        262 RMAGPREALWHAIIRRNYGCTHFIVGRDHA  291 (568)
T ss_pred             cccCcHHHHHHHHHHHhCCCCeEEECCCCC
Confidence                1244455544 459999999999976

>KOG3042 consensus Panthothenate synthetase [Coenzyme transport and metabolism]

Probab=91.43  E-value=0.72  Score=42.67  Aligned_cols=61  Identities=20%  Similarity=0.273  Sum_probs=41.4

Q ss_pred             ccCcCCHHHHHHHHHHHHcCCeEEEEEeCChhhhhcCC---CCCCCHHHHHHHHHHccCccEEEE
Q 021802           59 CFDMMHYGHCNALRQARALGDQLVVGVVSDAEIIANKG---PPVTPLHERMIMVNAVKWVDEVIS  120 (307)
Q Consensus        59 ~FD~lH~GH~~lL~qAk~~gd~LiVgV~sD~~i~~~Kg---~pi~s~eER~~ll~~~k~VD~Vv~  120 (307)
                      +.--+|-||+.+++|+++..++.+|.+.-+|.-.....   ...-+..+-...++++ +||-++.
T Consensus        31 TMG~LHeGH~SLvrqs~~~~~~tVVSIfVNP~QF~pteDL~~YPrt~~~D~~~L~~L-gvdvvfa   94 (283)
T KOG3042|consen   31 TMGCLHEGHASLVRQSVKENTYTVVSIFVNPSQFAPTEDLDNYPRTLPDDIKLLESL-GVDVVFA   94 (283)
T ss_pred             ccccccccHHHHHHHHHhhCceEEEEEEechhhcCChhHhhcCCccCccHHHHHHhc-CceEEEc
Confidence            33448999999999999999998888766663211111   1122334556778898 8887764

>PRK00380 panC pantoate--beta-alanine ligase; Reviewed

Probab=90.53  E-value=0.38  Score=45.91  Aligned_cols=39  Identities=28%  Similarity=0.503  Sum_probs=32.2

Q ss_pred             CCeEEEEeCcccccCHHHHHHHHHHHhCCCEEEEEEeCcc
Q 021802          248 DARIIYIDGAFDLFHAGHVEILRIARGLGDFLLVGIHNDQ  287 (307)
Q Consensus       248 ~~~~v~~~G~FDl~H~GHi~~L~~a~~~g~~liVgv~~D~  287 (307)
                      +++++++. +..-+|.||..++++|++.++.+||.+....
T Consensus        21 ~~~i~~v~-tmG~lH~GH~~Li~~a~~~a~~vVvTf~~~P   59 (281)
T PRK00380         21 GKRIGLVP-TMGALHEGHLSLVREARAEADIVVVSIFVNP   59 (281)
T ss_pred             CCeEEEEE-ccCceeHHHHHHHHHHHHhCCEEEEeCCCCH
Confidence            56777775 5555999999999999999998999887663

>PLN02341 pfkB-type carbohydrate kinase family protein

Probab=89.58  E-value=0.074  Score=53.86  Aligned_cols=44  Identities=7%  Similarity=0.078  Sum_probs=32.7

Q ss_pred             cccceehcccCCCCCCCCCeEEEEeCcccccCHHHHHHHHHHHhCC
Q 021802          231 PTSRRIVQFSNGKGPGPDARIIYIDGAFDLFHAGHVEILRIARGLG  276 (307)
Q Consensus       231 ~t~~~i~~f~~~~~~~~~~~~v~~~G~FDl~H~GHi~~L~~a~~~g  276 (307)
                      |+...+.+|-....  .++++++.+|+||.+|.|||.+|.++...|
T Consensus       398 p~~~ev~~~l~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  441 (470)
T PLN02341        398 ATLEKVLELLRASN--LNEDDTFWAELLKNSDCSEISFLSKMAING  441 (470)
T ss_pred             CCHHHHHHHHHhcC--CCcchhHHHHhhcccccchhhhhhhhhhcc
Confidence            33334444544333  357899999999999999999999988665

>PRK13477 bifunctional pantoate ligase/cytidylate kinase; Provisional

Probab=88.90  E-value=0.35  Score=49.82  Aligned_cols=36  Identities=31%  Similarity=0.558  Sum_probs=29.4

Q ss_pred             eEEEEeCcccccCHHHHHHHHHHHhCCCEEEEEEeCc
Q 021802          250 RIIYIDGAFDLFHAGHVEILRIARGLGDFLLVGIHND  286 (307)
Q Consensus       250 ~~v~~~G~FDl~H~GHi~~L~~a~~~g~~liVgv~~D  286 (307)
                      +|++|+ +==-+|.||+.++++|++.+|.+||.|.-+
T Consensus        21 ~ig~VP-TMG~LH~GHlsLi~~A~~~~d~vVvSIFVN   56 (512)
T PRK13477         21 TIGFVP-TMGALHQGHLSLIRRARQENDVVLVSIFVN   56 (512)
T ss_pred             cEEEEC-CCcchhHHHHHHHHHHHHhCCEEEEEEccC
Confidence            667664 334589999999999999999999999543

>TIGR00018 panC pantoate--beta-alanine ligase

Probab=87.83  E-value=0.67  Score=44.32  Aligned_cols=37  Identities=22%  Similarity=0.409  Sum_probs=30.7

Q ss_pred             CCeEEE--EeCcccccCHHHHHHHHHHHhCCCEEEEEEeCcc
Q 021802          248 DARIIY--IDGAFDLFHAGHVEILRIARGLGDFLLVGIHNDQ  287 (307)
Q Consensus       248 ~~~~v~--~~G~FDl~H~GHi~~L~~a~~~g~~liVgv~~D~  287 (307)
                      +++|++  +-|.   +|.||..++++|++.++.+||.+....
T Consensus        21 g~~ig~VpTmG~---LH~GH~~LI~~a~~~a~~vVvTffvnP   59 (282)
T TIGR00018        21 GKTVGFVPTMGN---LHDGHMSLIDRAVAENDVVVVSIFVNP   59 (282)
T ss_pred             CCeEEEEECCCc---ccHHHHHHHHHHHHhCCeEEEEecCCh
Confidence            456655  4677   999999999999999999999997663

This family is pantoate--beta-alanine ligase, the last enzyme of pantothenate biosynthesis.

>cd00560 PanC Pantoate-beta-alanine ligase

Probab=87.60  E-value=0.69  Score=44.05  Aligned_cols=37  Identities=32%  Similarity=0.542  Sum_probs=30.7

Q ss_pred             CCeEEE--EeCcccccCHHHHHHHHHHHhCCCEEEEEEeCcc
Q 021802          248 DARIIY--IDGAFDLFHAGHVEILRIARGLGDFLLVGIHNDQ  287 (307)
Q Consensus       248 ~~~~v~--~~G~FDl~H~GHi~~L~~a~~~g~~liVgv~~D~  287 (307)
                      +++|++  +-|.   +|.||..++++|++.++.+||.+....
T Consensus        21 ~~~ig~V~TmG~---LH~GH~~LI~~a~~~a~~vVvtf~~nP   59 (277)
T cd00560          21 GKTIGFVPTMGA---LHEGHLSLVRRARAENDVVVVSIFVNP   59 (277)
T ss_pred             CCeEEEEECCCc---ccHHHHHHHHHHHHhCCEEEEEecCCh
Confidence            455655  4566   999999999999999999999997764

PanC Pantoate-beta-alanine ligase, also known as pantothenate synthase, catalyzes the formation of pantothenate from pantoate and alanine. PanC belongs to a large superfamily of nucleotidyltransferases that includes , ATP sulfurylase (ATPS), phosphopantetheine adenylyltransferase (PPAT), and the amino-acyl tRNA synthetases. The enzymes of this family are structurally similar and share a dinucleotide-binding domain.

>COG0159 TrpA Tryptophan synthase alpha chain [Amino acid transport and metabolism]

Probab=86.61  E-value=8.2  Score=36.68  Aligned_cols=103  Identities=18%  Similarity=0.192  Sum_probs=65.1

Q ss_pred             hHHhHhhhcCCCCeEEEEecccCc-CCHHHHHHHHHHHHcC-CeEEEEEeCChhhhhcCCCCCCCHHHHHHHHHHcc--C
Q 021802           39 DRWLQWTRKKKKPVRVYMDGCFDM-MHYGHCNALRQARALG-DQLVVGVVSDAEIIANKGPPVTPLHERMIMVNAVK--W  114 (307)
Q Consensus        39 ~~~~~~~~~~~~~~~V~~~G~FD~-lH~GH~~lL~qAk~~g-d~LiVgV~sD~~i~~~Kg~pi~s~eER~~ll~~~k--~  114 (307)
                      .++.+..+......-++..+++.+ +|+|=.+.+++|++.| |-++|   +|           +|.||..++...|+  +
T Consensus        82 lel~~~~r~~~~~~Pivlm~Y~Npi~~~Gie~F~~~~~~~GvdGliv---pD-----------LP~ee~~~~~~~~~~~g  147 (265)
T COG0159          82 LELVEEIRAKGVKVPIVLMTYYNPIFNYGIEKFLRRAKEAGVDGLLV---PD-----------LPPEESDELLKAAEKHG  147 (265)
T ss_pred             HHHHHHHHhcCCCCCEEEEEeccHHHHhhHHHHHHHHHHcCCCEEEe---CC-----------CChHHHHHHHHHHHHcC
Confidence            456666665545444888999999 8899999999999987 65553   34           44455554444433  8


Q ss_pred             ccEEEEcCCCcccHHHHHHHHHhcCccEEEEcCCCCcCCCCC
Q 021802          115 VDEVISDAPYAITKDFMKKLFDEYNIDYIIHGDDPCVLPDGT  156 (307)
Q Consensus       115 VD~Vv~~~py~~t~dfle~ll~~l~~d~VV~GdD~~fg~~g~  156 (307)
                      +|.+.+ ++.+++.+.++.+.+.-.--..+++-.-..|....
T Consensus       148 i~~I~l-vaPtt~~~rl~~i~~~a~GFiY~vs~~GvTG~~~~  188 (265)
T COG0159         148 IDPIFL-VAPTTPDERLKKIAEAASGFIYYVSRMGVTGARNP  188 (265)
T ss_pred             CcEEEE-eCCCCCHHHHHHHHHhCCCcEEEEecccccCCCcc
Confidence            888888 55566677777765433222333444445554443

>PLN02660 pantoate--beta-alanine ligase

Probab=86.34  E-value=0.9  Score=43.49  Aligned_cols=37  Identities=32%  Similarity=0.567  Sum_probs=30.3

Q ss_pred             CCeEEEE--eCcccccCHHHHHHHHHHHhCCCEEEEEEeCcc
Q 021802          248 DARIIYI--DGAFDLFHAGHVEILRIARGLGDFLLVGIHNDQ  287 (307)
Q Consensus       248 ~~~~v~~--~G~FDl~H~GHi~~L~~a~~~g~~liVgv~~D~  287 (307)
                      +++|+++  -|.   +|.||..++++|++.++.+||.+..+.
T Consensus        20 g~~igfVpTmG~---LH~GH~~LI~~a~~~a~~vVvTffvnP   58 (284)
T PLN02660         20 GKRIALVPTMGY---LHEGHLSLVRAARARADVVVVSIYVNP   58 (284)
T ss_pred             CCeEEEEEcCch---hhHHHHHHHHHHHHhCCEEEEEEeCCh
Confidence            4456554  566   999999999999999999999988664

>COG0196 RibF FAD synthase [Coenzyme metabolism]

Probab=83.80  E-value=0.87  Score=43.99  Aligned_cols=27  Identities=30%  Similarity=0.363  Sum_probs=23.9

Q ss_pred             CeEEEEeCcccccCHHHHHHHHHHHhC
Q 021802          249 ARIIYIDGAFDLFHAGHVEILRIARGL  275 (307)
Q Consensus       249 ~~~v~~~G~FDl~H~GHi~~L~~a~~~  275 (307)
                      ...+++-|.||=+|.||-.+|++|++.
T Consensus        15 ~~~~l~IG~FDGvHlGHq~ll~~a~~~   41 (304)
T COG0196          15 RGCVLTIGNFDGVHLGHQKLLAQALEA   41 (304)
T ss_pred             CCcEEEEEcCCccchhHHHHHHHHHHH
Confidence            467899999999999999999988844

>KOG3042 consensus Panthothenate synthetase [Coenzyme transport and metabolism]

Probab=81.64  E-value=2.4  Score=39.34  Aligned_cols=39  Identities=18%  Similarity=0.383  Sum_probs=33.4

Q ss_pred             CCeEEEEeCcccccCHHHHHHHHHHHhCCCEEEEEEeCcc
Q 021802          248 DARIIYIDGAFDLFHAGHVEILRIARGLGDFLLVGIHNDQ  287 (307)
Q Consensus       248 ~~~~v~~~G~FDl~H~GHi~~L~~a~~~g~~liVgv~~D~  287 (307)
                      +++|.+++ +--.+|-||..+.++++++.++.+|.|.-+.
T Consensus        23 g~tIgfVP-TMG~LHeGH~SLvrqs~~~~~~tVVSIfVNP   61 (283)
T KOG3042|consen   23 GETIGFVP-TMGCLHEGHASLVRQSVKENTYTVVSIFVNP   61 (283)
T ss_pred             CCeEEEec-ccccccccHHHHHHHHHhhCceEEEEEEech
Confidence            57888886 4567899999999999999999999997653

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	307
3elb_A	341	Human Ctp: Phosphoethanolamine Cytidylyltransferase		1e-57
3hl4_A	236	Crystal Structure Of A Mammalian Ctp:phosphocholine		3e-22
1coz_A	129	Ctp:glycerol-3-Phosphate Cytidylyltransferase From		2e-10
1coz_A	129	Ctp:glycerol-3-Phosphate Cytidylyltransferase From		8e-04
2b7l_A	132	Crystal Structure Of Ctp:glycerol-3-Phosphate Cytid		2e-10
2b7l_A	132	Crystal Structure Of Ctp:glycerol-3-Phosphate Cytid		5e-05
3glv_A	143	Crystal Structure Of The Lipopolysaccharide Core Bi		3e-07

>pdb|3ELB|A Chain A, Human Ctp: Phosphoethanolamine Cytidylyltransferase In Complex With Cmp Length = 341

Iteration: 1
 Score =  219 bits (558), Expect = 1e-57,   Method: Compositional matrix adjust.
 Identities = 114/243 (46%), Positives = 155/243 (63%), Gaps = 9/243 (3%)
Query: 49  KKPVRVYMDGCFDMMHYGHCNALRQARALGDQLVVGVVSDAEIIANKGPPVTPLHERMIM 108
           ++ VRV+ DGC+D +HYGH N LRQARA GD L+VGV +D EI  +KGPPV    ER   
Sbjct: 5   RRAVRVWCDGCYDXVHYGHSNQLRQARAXGDYLIVGVHTDEEIAKHKGPPVFTQEERYKX 64
Query: 109 VNAVKWVDEVISDAPYAITKDFMKKLFDEYNIDYIIHGDDPCVLPDGTDAYELAKKAGRY 168
           V A+KWVDEV+  APY  T + +    D+YN D+ +HG+D  +  DG D YE  K+AGRY
Sbjct: 65  VQAIKWVDEVVPAAPYVTTLETL----DKYNCDFCVHGNDITLTVDGRDTYEEVKQAGRY 120
Query: 169 KQIKRTEGVSSTDIVGRMLLCVRERSISDSHNHSSLQRQFSHGHNQKVEERGSGGTRVSH 228
           ++ KRT+GVS+TD+VGR LL  +      S   SS  R+++    +    R    T VS 
Sbjct: 121 RECKRTQGVSTTDLVGRXLLVTKAH--HSSQEXSSEYREYADSFGKCPGGRNP-WTGVSQ 177
Query: 229 FLPTSRRIVQFSNGKGPGPDARIIYIDGAFDLFHAGHVEILRIARGLGD--FLLVGIHND 286
           FL TS++I+QF++GK P P   +IY+ GAFDLFH GHV+ L     L +  +++ G+H D
Sbjct: 178 FLQTSQKIIQFASGKEPQPGETVIYVAGAFDLFHIGHVDFLEKVHRLAERPYIIAGLHFD 237
Query: 287 QTV 289
           Q V
Sbjct: 238 QEV 240

>pdb|3HL4|A Chain A, Crystal Structure Of A Mammalian Ctp:phosphocholine Cytidylyltransferase With Cdp-Choline Length = 236

Iteration: 1
 Score =  102 bits (253), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 62/163 (38%), Positives = 93/163 (57%), Gaps = 12/163 (7%)
Query: 49  KKPVRVYMDGCFDMMHYGHCNALRQARAL--GDQLVVGVVSDAEIIANKGPPVTPLHERM 106
           ++PVRVY DG FD+ H GH  AL QA+ L     L+VGV SD      KG  V   +ER 
Sbjct: 74  ERPVRVYADGIFDLFHSGHARALMQAKNLFPNTYLIVGVCSDELTHNFKGFTVMNENERY 133
Query: 107 IMVNAVKWVDEVISDAPYAITKDFMKKLFDEYNIDYIIHGDDPCVLPDGTDAYELAKKAG 166
             V   ++VDEV+ +AP+ +T +F+     E+ ID++ H D P       D Y+  K+AG
Sbjct: 134 DAVQHCRYVDEVVRNAPWTLTPEFLA----EHRIDFVAHDDIPYSSAGSDDVYKHIKEAG 189
Query: 167 RYKQIKRTEGVSSTDIVGRMLLCVRERSISDSHNHSSLQRQFS 209
            +   +RTEG+S++DI+ R+   VR+    D +   +LQR ++
Sbjct: 190 MFAPTQRTEGISTSDIITRI---VRD---YDVYARRNLQRGYT 226

>pdb|1COZ|A Chain A, Ctp:glycerol-3-Phosphate Cytidylyltransferase From Bacillus Subtilis Length = 129

Iteration: 1
 Score = 62.8 bits (151), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 38/130 (29%), Positives = 65/130 (50%), Gaps = 10/130 (7%)
Query: 53  RVYMDGCFDMMHYGHCNALRQARALGDQLVVGVVSDAEIIANKGPPVTPLHERMIMVNAV 112
           +V   G FD++H+GH   L +A+ LGD LVV + +D   +  +         R +++  +
Sbjct: 3   KVITYGTFDLLHWGHIKLLERAKQLGDYLVVAISTDEFNLQKQKKAYHSYEHRKLILETI 62
Query: 113 KWVDEVISDAPYAITKDFMKKLFDEYNIDYIIHGDDPCVLPDGTDAYELAKKAGRYKQIK 172
           ++VDEVI +  +   K   + + D +NID  + GD      D    ++  K       + 
Sbjct: 63  RYVDEVIPEKNWEQKK---QDIID-HNIDVFVMGD------DWEGKFDFLKDQCEVVYLP 112
Query: 173 RTEGVSSTDI 182
           RTEG+S+T I
Sbjct: 113 RTEGISTTKI 122

>pdb|1COZ|A Chain A, Ctp:glycerol-3-Phosphate Cytidylyltransferase From Bacillus Subtilis Length = 129

Iteration: 1
 Score = 41.2 bits (95), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 16/32 (50%), Positives = 23/32 (71%)
Query: 256 GAFDLFHAGHVEILRIARGLGDFLLVGIHNDQ 287
           G FDL H GH+++L  A+ LGD+L+V I  D+
Sbjct: 8   GTFDLLHWGHIKLLERAKQLGDYLVVAISTDE 39

>pdb|2B7L|A Chain A, Crystal Structure Of Ctp:glycerol-3-Phosphate Cytidylyltransferase From Staphylococcus Aureus Length = 132

Iteration: 1
 Score = 62.8 bits (151), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 37/130 (28%), Positives = 66/130 (50%), Gaps = 10/130 (7%)
Query: 53  RVYMDGCFDMMHYGHCNALRQARALGDQLVVGVVSDAEIIANKGPPVTPLHERMIMVNAV 112
           RV   G +D++HYGH   LR+AR +GD L+V + +D               +R +M+ ++
Sbjct: 3   RVITYGTYDLLHYGHIELLRRAREMGDYLIVALSTDEFNQIKHKKSYYDYEQRKMMLESI 62
Query: 113 KWVDEVISDAPYAITKDFMKKLFDEYNIDYIIHGDDPCVLPDGTDAYELAKKAGRYKQIK 172
           ++VD VI +  +   +D ++K    +++D  + G       D    ++  K       +K
Sbjct: 63  RYVDLVIPEKGWGQKEDDVEK----FDVDVFVMG------HDWEGEFDFLKDKCEVIYLK 112
Query: 173 RTEGVSSTDI 182
           RTEG+S+T I
Sbjct: 113 RTEGISTTKI 122

>pdb|2B7L|A Chain A, Crystal Structure Of Ctp:glycerol-3-Phosphate Cytidylyltransferase From Staphylococcus Aureus Length = 132

Iteration: 1
 Score = 45.1 bits (105), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 17/43 (39%), Positives = 29/43 (67%)
Query: 256 GAFDLFHAGHVEILRIARGLGDFLLVGIHNDQTVRLKNPSVSF 298
           G +DL H GH+E+LR AR +GD+L+V +  D+  ++K+    +
Sbjct: 8   GTYDLLHYGHIELLRRAREMGDYLIVALSTDEFNQIKHKKSYY 50

>pdb|3GLV|A Chain A, Crystal Structure Of The Lipopolysaccharide Core Biosynthesis Protein From Thermoplasma Volcanium Gss1 Length = 143

Iteration: 1
 Score = 52.8 bits (125), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 24/68 (35%), Positives = 41/68 (60%)
Query: 52  VRVYMDGCFDMMHYGHCNALRQARALGDQLVVGVVSDAEIIANKGPPVTPLHERMIMVNA 111
           +RV   G FD++H GH + L++++ LGD+LVV V  D+    N   P+   + R+ +++ 
Sbjct: 3   IRVMATGVFDILHLGHIHYLKESKKLGDELVVVVARDSTARNNGKIPIFDENSRLALISE 62
Query: 112 VKWVDEVI 119
           +K VD  I
Sbjct: 63  LKVVDRAI 70

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	307
3elb_A	341	Ethanolamine-phosphate cytidylyltransferase; kenne	1e-101
3elb_A	341	Ethanolamine-phosphate cytidylyltransferase; kenne	6e-48
3hl4_A	236	Choline-phosphate cytidylyltransferase A; rossmann	1e-60
3hl4_A	236	Choline-phosphate cytidylyltransferase A; rossmann	2e-18
2b7l_A	132	Glycerol-3-phosphate cytidylyltransferase; rossman	8e-54
2b7l_A	132	Glycerol-3-phosphate cytidylyltransferase; rossman	1e-15
1coz_A	129	Protein (glycerol-3-phosphate cytidylyltransferase	8e-54
1coz_A	129	Protein (glycerol-3-phosphate cytidylyltransferase	4e-15
3glv_A	143	Lipopolysaccharide core biosynthesis protein; stru	6e-20
3glv_A	143	Lipopolysaccharide core biosynthesis protein; stru	1e-09
3do8_A	148	Phosphopantetheine adenylyltransferase; protein wi	2e-09
3do8_A	148	Phosphopantetheine adenylyltransferase; protein wi	5e-05
1lw7_A	365	Transcriptional regulator NADR; NMN, NMN adenylyl	2e-04
1lw7_A	365	Transcriptional regulator NADR; NMN, NMN adenylyl	8e-04
1f9a_A	168	Hypothetical protein MJ0541; alpha/beta, transfera	3e-04
1f9a_A	168	Hypothetical protein MJ0541; alpha/beta, transfera	4e-04
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	5e-04

>3elb_A Ethanolamine-phosphate cytidylyltransferase; kennedy pathway, CMP, CTP, phosphoethanolamine, cytidylyltra SGC, structural genomics consortium; HET: C5P; 2.00A {Homo sapiens} Length = 341

 Score =  298 bits (765), Expect = e-101
 Identities = 116/252 (46%), Positives = 156/252 (61%), Gaps = 10/252 (3%)

Query: 47  KKKKPVRVYMDGCFDMMHYGHCNALRQARALGDQLVVGVVSDAEIIANKGPPVTPLHERM 106
             ++ VRV+ DGC+DM+HYGH N LRQARA+GD L+VGV +D EI  +KGPPV    ER 
Sbjct: 3   GGRRAVRVWCDGCYDMVHYGHSNQLRQARAMGDYLIVGVHTDEEIAKHKGPPVFTQEERY 62

Query: 107 IMVNAVKWVDEVISDAPYAITKDFMKKLFDEYNIDYIIHGDDPCVLPDGTDAYELAKKAG 166
            MV A+KWVDEV+  APY  T + + K    YN D+ +HG+D  +  DG D YE  K+AG
Sbjct: 63  KMVQAIKWVDEVVPAAPYVTTLETLDK----YNCDFCVHGNDITLTVDGRDTYEEVKQAG 118

Query: 167 RYKQIKRTEGVSSTDIVGRMLLCVRERSISDSHNHSSLQRQFSHGHNQKVEERGSGGTRV 226
           RY++ KRT+GVS+TD+VGRMLL  +    S   +    +   S G            T V
Sbjct: 119 RYRECKRTQGVSTTDLVGRMLLVTKAHHSSQEMSSEYREYADSFGKCPGGRNP---WTGV 175

Query: 227 SHFLPTSRRIVQFSNGKGPGPDARIIYIDGAFDLFHAGHVEILRIARGLGD--FLLVGIH 284
           S FL TS++I+QF++GK P P   +IY+ GAFDLFH GHV+ L     L +  +++ G+H
Sbjct: 176 SQFLQTSQKIIQFASGKEPQPGETVIYVAGAFDLFHIGHVDFLEKVHRLAERPYIIAGLH 235

Query: 285 NDQTV-RLKNPS 295
            DQ V   K  +
Sbjct: 236 FDQEVNHYKGKN 247

>3elb_A Ethanolamine-phosphate cytidylyltransferase; kennedy pathway, CMP, CTP, phosphoethanolamine, cytidylyltra SGC, structural genomics consortium; HET: C5P; 2.00A {Homo sapiens} Length = 341

 Score =  162 bits (412), Expect = 6e-48
 Identities = 43/153 (28%), Positives = 79/153 (51%), Gaps = 9/153 (5%)

Query: 40  RWLQWTRKKKKPVRVYMDGCFDMMHYGHCNALRQARALGDQ--LVVGVVSDAEIIANKGP 97
           ++      +     +Y+ G FD+ H GH + L +   L ++  ++ G+  D E+   KG 
Sbjct: 187 QFASGKEPQPGETVIYVAGAFDLFHIGHVDFLEKVHRLAERPYIIAGLHFDQEVNHYKGK 246

Query: 98  --PVTPLHERMIMVNAVKWVDEVISDAPYAITKDFMKKLFDEYNIDYIIHGDDPCV-LPD 154
             P+  LHER + V A ++V EV+  APYA+T + +      + +D + HG    +   D
Sbjct: 247 NYPIMNLHERTLSVLACRYVSEVVIGAPYAVTAELLSH----FKVDLVCHGKTEIIPDRD 302

Query: 155 GTDAYELAKKAGRYKQIKRTEGVSSTDIVGRML 187
           G+D Y+  K+ G ++QI     +++  IV R++
Sbjct: 303 GSDPYQEPKRRGIFRQIDSGSNLTTDLIVQRII 335

>3hl4_A Choline-phosphate cytidylyltransferase A; rossmann fold, phospholipid synthesis, phosphatidylcholine, phosphocholine, CTP, CDP-choline; HET: CDC; 2.20A {Rattus norvegicus} Length = 236

 Score =  192 bits (488), Expect = 1e-60
 Identities = 55/144 (38%), Positives = 83/144 (57%), Gaps = 6/144 (4%)

Query: 46  RKKKKPVRVYMDGCFDMMHYGHCNALRQARAL--GDQLVVGVVSDAEIIANKGPPVTPLH 103
              ++PVRVY DG FD+ H GH  AL QA+ L     L+VGV SD      KG  V   +
Sbjct: 71  TPCERPVRVYADGIFDLFHSGHARALMQAKNLFPNTYLIVGVCSDELTHNFKGFTVMNEN 130

Query: 104 ERMIMVNAVKWVDEVISDAPYAITKDFMKKLFDEYNIDYIIHGDDPCVLPDGTDAYELAK 163
           ER   V   ++VDEV+ +AP+ +T +F+ +    + ID++ H D P       D Y+  K
Sbjct: 131 ERYDAVQHCRYVDEVVRNAPWTLTPEFLAE----HRIDFVAHDDIPYSSAGSDDVYKHIK 186

Query: 164 KAGRYKQIKRTEGVSSTDIVGRML 187
           +AG +   +RTEG+S++DI+ R++
Sbjct: 187 EAGMFAPTQRTEGISTSDIITRIV 210

>3hl4_A Choline-phosphate cytidylyltransferase A; rossmann fold, phospholipid synthesis, phosphatidylcholine, phosphocholine, CTP, CDP-choline; HET: CDC; 2.20A {Rattus norvegicus} Length = 236

 Score = 82.0 bits (202), Expect = 2e-18
 Identities = 27/125 (21%), Positives = 44/125 (35%), Gaps = 3/125 (2%)

Query: 175 EGVSSTDIVGRMLLCVRERSISDSHNHSSLQRQFSHGHNQKVEERGSGGTRVSHFLPTSR 234
           +  SS  +  R            +       +        +     S    V    P  R
Sbjct: 2   DAQSSAKVNSRKRRKEVPGPNGATEEDGIPSKVQRCAVGLRQPAPFSDEIEVDFSKPYVR 61

Query: 235 RIVQFSNGKGPGPDARIIYIDGAFDLFHAGHVEILRIARGL--GDFLLVGIHNDQTV-RL 291
             ++ +    P      +Y DG FDLFH+GH   L  A+ L    +L+VG+ +D+     
Sbjct: 62  VTMEEACRGTPCERPVRVYADGIFDLFHSGHARALMQAKNLFPNTYLIVGVCSDELTHNF 121

Query: 292 KNPSV 296
           K  +V
Sbjct: 122 KGFTV 126

>2b7l_A Glycerol-3-phosphate cytidylyltransferase; rossmann fold; 3.00A {Staphylococcus aureus} Length = 132

 Score =  171 bits (435), Expect = 8e-54
 Identities = 37/135 (27%), Positives = 67/135 (49%), Gaps = 10/135 (7%)

Query: 53  RVYMDGCFDMMHYGHCNALRQARALGDQLVVGVVSDAEIIANKGPPVTPLHERMIMVNAV 112
           RV   G +D++HYGH   LR+AR +GD L+V + +D               +R +M+ ++
Sbjct: 3   RVITYGTYDLLHYGHIELLRRAREMGDYLIVALSTDEFNQIKHKKSYYDYEQRKMMLESI 62

Query: 113 KWVDEVISDAPYAITKDFMKKLFDEYNIDYIIHGDDPCVLPDGTDAYELAKKAGRYKQIK 172
           ++VD VI +  +   +D ++K    +++D  + G       D    ++  K       +K
Sbjct: 63  RYVDLVIPEKGWGQKEDDVEK----FDVDVFVMGH------DWEGEFDFLKDKCEVIYLK 112

Query: 173 RTEGVSSTDIVGRML 187
           RTEG+S+T I   + 
Sbjct: 113 RTEGISTTKIKQELY 127

>2b7l_A Glycerol-3-phosphate cytidylyltransferase; rossmann fold; 3.00A {Staphylococcus aureus} Length = 132

 Score = 71.4 bits (176), Expect = 1e-15
 Identities = 17/48 (35%), Positives = 27/48 (56%), Gaps = 1/48 (2%)

Query: 250 RIIYIDGAFDLFHAGHVEILRIARGLGDFLLVGIHNDQTV-RLKNPSV 296
           + +   G +DL H GH+E+LR AR +GD+L+V +  D+        S 
Sbjct: 2   KRVITYGTYDLLHYGHIELLRRAREMGDYLIVALSTDEFNQIKHKKSY 49

>1coz_A Protein (glycerol-3-phosphate cytidylyltransferase); HET: CTP; 2.00A {Bacillus subtilis} SCOP: c.26.1.2 PDB: 1n1d_A* Length = 129

 Score =  170 bits (434), Expect = 8e-54
 Identities = 37/134 (27%), Positives = 64/134 (47%), Gaps = 10/134 (7%)

Query: 53  RVYMDGCFDMMHYGHCNALRQARALGDQLVVGVVSDAEIIANKGPPVTPLHERMIMVNAV 112
           +V   G FD++H+GH   L +A+ LGD LVV + +D   +  +         R +++  +
Sbjct: 3   KVITYGTFDLLHWGHIKLLERAKQLGDYLVVAISTDEFNLQKQKKAYHSYEHRKLILETI 62

Query: 113 KWVDEVISDAPYAITKDFMKKLFDEYNIDYIIHGDDPCVLPDGTDAYELAKKAGRYKQIK 172
           ++VDEVI +  +   K  +      +NID  + GD      D    ++  K       + 
Sbjct: 63  RYVDEVIPEKNWEQKKQDIID----HNIDVFVMGD------DWEGKFDFLKDQCEVVYLP 112

Query: 173 RTEGVSSTDIVGRM 186
           RTEG+S+T I   +
Sbjct: 113 RTEGISTTKIKEEI 126

>1coz_A Protein (glycerol-3-phosphate cytidylyltransferase); HET: CTP; 2.00A {Bacillus subtilis} SCOP: c.26.1.2 PDB: 1n1d_A* Length = 129

 Score = 69.8 bits (172), Expect = 4e-15
 Identities = 16/48 (33%), Positives = 28/48 (58%), Gaps = 1/48 (2%)

Query: 250 RIIYIDGAFDLFHAGHVEILRIARGLGDFLLVGIHNDQTV-RLKNPSV 296
           + +   G FDL H GH+++L  A+ LGD+L+V I  D+   + +  + 
Sbjct: 2   KKVITYGTFDLLHWGHIKLLERAKQLGDYLVVAISTDEFNLQKQKKAY 49

>3glv_A Lipopolysaccharide core biosynthesis protein; structural GEN PSI, MCSG, protein structure initiative; HET: AMP; 1.99A {Thermoplasma volcanium GSS1} Length = 143

 Score = 83.4 bits (207), Expect = 6e-20
 Identities = 30/144 (20%), Positives = 61/144 (42%), Gaps = 30/144 (20%)

Query: 58  GCFDMMHYGHCNALRQARALGDQLVVGVVSDAEIIANKGP--PVTPLHERMIMVNAVKWV 115
           G FD++H GH + L++++ LGD+LVV V  D+          P+   + R+ +++ +K V
Sbjct: 9   GVFDILHLGHIHYLKESKKLGDELVVVVARDSTA--RNNGKIPIFDENSRLALISELKVV 66

Query: 116 DEVISDAPYAITKDFMKKLFDEYNIDYIIHGDDPCVLPDGTD--------AYELAKKAGR 167
           D  I              L  E ++   +    P ++  G D          ++ K    
Sbjct: 67  DRAI--------------LGHEGDMMKTVIEVKPDIITLGYDQKFDEAELQSKINKLGIT 112

Query: 168 YKQIK----RTEGVSSTDIVGRML 187
            K ++      +  SS+ +  +++
Sbjct: 113 VKIVRISKYDGQLNSSSSVRKKIM 136

>3glv_A Lipopolysaccharide core biosynthesis protein; structural GEN PSI, MCSG, protein structure initiative; HET: AMP; 1.99A {Thermoplasma volcanium GSS1} Length = 143

 Score = 54.9 bits (133), Expect = 1e-09
 Identities = 15/43 (34%), Positives = 23/43 (53%)

Query: 250 RIIYIDGAFDLFHAGHVEILRIARGLGDFLLVGIHNDQTVRLK 292
             +   G FD+ H GH+  L+ ++ LGD L+V +  D T R  
Sbjct: 3   IRVMATGVFDILHLGHIHYLKESKKLGDELVVVVARDSTARNN 45

>3do8_A Phosphopantetheine adenylyltransferase; protein with unknown function, structural genomics, MCSG, PSI-2, protein structure initiative; 1.60A {Archaeoglobus fulgidus} Length = 148

 Score = 54.3 bits (130), Expect = 2e-09
 Identities = 23/144 (15%), Positives = 47/144 (32%), Gaps = 13/144 (9%)

Query: 53  RVYMDGCFDMMHYGHCNALRQARALGDQLVVGVVSDAEIIANKGPPVTPLHERMIMVNAV 112
           +V + G F+ +H GH   +  A  LG + +   V+   +   +   V P   R   V   
Sbjct: 2   KVALGGTFEPLHEGHKKLIDVAIKLGGRDITIGVTSDRMARARIRSVLPFAIRAENVKRY 61

Query: 113 KWVDEVISDAPYAITKDFMKKLFDEYNIDYIIHGDDPCVLPDGTDAYELAKKAG------ 166
                        IT  + K L  ++    ++   +           +  ++ G      
Sbjct: 62  VMRKYGFEPEIVKITNPYGKTLDVDFEY--LVVSPE--TYEMALKINQKREELGKRKITI 117

Query: 167 ---RYKQIKRTEGVSSTDIVGRML 187
               +   +  + +SST I    +
Sbjct: 118 VKVDWMMAEDGKPISSTRIKRGEI 141

>3do8_A Phosphopantetheine adenylyltransferase; protein with unknown function, structural genomics, MCSG, PSI-2, protein structure initiative; 1.60A {Archaeoglobus fulgidus} Length = 148

 Score = 41.9 bits (98), Expect = 5e-05
 Identities = 11/45 (24%), Positives = 24/45 (53%), Gaps = 1/45 (2%)

Query: 251 IIYIDGAFDLFHAGHVEILRIARGLG-DFLLVGIHNDQTVRLKNP 294
            + + G F+  H GH +++ +A  LG   + +G+ +D+  R +  
Sbjct: 2   KVALGGTFEPLHEGHKKLIDVAIKLGGRDITIGVTSDRMARARIR 46

>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1 Length = 365

 Score = 41.8 bits (97), Expect = 2e-04
 Identities = 21/95 (22%), Positives = 37/95 (38%), Gaps = 4/95 (4%)

Query: 49  KKPVRVYMDGCFDMMHYGHCNALRQARALGDQLVVGVVSDAEIIANKGPPVTPLHERMIM 108
           +K V V   G F  +H GH N + +A +  D+L V V SD     +         +RM  
Sbjct: 1   EKKVGVIF-GKFYPVHTGHINMIYEAFSKVDELHVIVCSDTV--RDLKLFYDSKMKRMPT 57

Query: 109 VNA-VKWVDEVISDAPYAITKDFMKKLFDEYNIDY 142
           V   ++W+ ++       I    + +       + 
Sbjct: 58  VQDRLRWMQQIFKYQKNQIFIHHLVEDGIPSYPNG 92

>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1 Length = 365

 Score = 39.5 bits (91), Expect = 8e-04
 Identities = 15/56 (26%), Positives = 24/56 (42%)

Query: 250 RIIYIDGAFDLFHAGHVEILRIARGLGDFLLVGIHNDQTVRLKNPSVSFILLDFTL 305
           ++  I G F   H GH+ ++  A    D L V + +D    LK    S +    T+
Sbjct: 3   KVGVIFGKFYPVHTGHINMIYEAFSKVDELHVIVCSDTVRDLKLFYDSKMKRMPTV 58

>1f9a_A Hypothetical protein MJ0541; alpha/beta, transferase, structural genomics; HET: ATP; 2.00A {Methanocaldococcus jannaschii} SCOP: c.26.1.3 Length = 168

 Score = 39.8 bits (93), Expect = 3e-04
 Identities = 15/61 (24%), Positives = 30/61 (49%), Gaps = 2/61 (3%)

Query: 52  VRVYMDGCFDMMHYGHCNALRQARALGDQLVVGVVSDAEIIANKGPPVTPLHERMIMVNA 111
           +R ++ G F   H GH   +++     D++++G+ S A+       P T   ER++M+  
Sbjct: 1   LRGFIIGRFQPFHKGHLEVIKKIAEEVDEIIIGIGS-AQKSHTLENPFT-AGERILMITQ 58

Query: 112 V 112
            
Sbjct: 59  S 59

>1f9a_A Hypothetical protein MJ0541; alpha/beta, transferase, structural genomics; HET: ATP; 2.00A {Methanocaldococcus jannaschii} SCOP: c.26.1.3 Length = 168

 Score = 39.4 bits (92), Expect = 4e-04
 Identities = 13/49 (26%), Positives = 22/49 (44%), Gaps = 1/49 (2%)

Query: 250 RIIYIDGAFDLFHAGHVEILRIARGLGDFLLVGIHNDQTVRLKNPSVSF 298
           R   I G F  FH GH+E+++      D +++GI + Q         + 
Sbjct: 2   RGFII-GRFQPFHKGHLEVIKKIAEEVDEIIIGIGSAQKSHTLENPFTA 49

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 40.6 bits (94), Expect = 5e-04
 Identities = 52/325 (16%), Positives = 91/325 (28%), Gaps = 111/325 (34%)

Query: 6   KEQSARILATCLIAGA-----VMVAGFSLLTLYLAA----PNDRWLQWTRKKKKPVRVYM 56
            ++   +L   L          ++         +A         W  W       +   +
Sbjct: 300 PDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTII 359

Query: 57  DGCFDMMHYGHCNALRQA--RALGDQLVV------------------GVVSDAEIIANKG 96
           +           N L  A  R + D+L V                   + SD  ++ NK 
Sbjct: 360 ESSL--------NVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNK- 410

Query: 97  PPVTPLHERMIMVNAVKWVDE-VISDAPYAITKDFM----------KKLFDEYNIDYIIH 145
                LH+   +V   K   E  IS    +I  +            + + D YNI     
Sbjct: 411 -----LHKYS-LVE--KQPKESTISI--PSIYLELKVKLENEYALHRSIVDHYNIPKTFD 460

Query: 146 GDDPCVLPDGTDAY---ELAKKAGRY--KQIKRTEGVSSTDIVGRMLLCVRERSISDSHN 200
            DD   +P   D Y    +      +  K I+  E      +   + L           +
Sbjct: 461 SDDL--IPPYLDQYFYSHIG-----HHLKNIEHPE---RMTLFRMVFL-----------D 499

Query: 201 HSSLQRQFSHGHNQKVEERGSGGTRVSHFLPTSRRIVQFSNGKG------PGPDARII-Y 253
              L+        QK+    +        L T   + Q    K       P  +  +   
Sbjct: 500 FRFLE--------QKIRHDSTAWNASGSILNT---LQQLKFYKPYICDNDPKYERLVNAI 548

Query: 254 IDGAF------DLFHAGHVEILRIA 272
           +D  F      +L  + + ++LRIA
Sbjct: 549 LD--FLPKIEENLICSKYTDLLRIA 571

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	307
3elb_A	341	Ethanolamine-phosphate cytidylyltransferase; kenne	100.0
3hl4_A	236	Choline-phosphate cytidylyltransferase A; rossmann	99.98
3elb_A	341	Ethanolamine-phosphate cytidylyltransferase; kenne	99.95
2b7l_A	132	Glycerol-3-phosphate cytidylyltransferase; rossman	99.91
1coz_A	129	Protein (glycerol-3-phosphate cytidylyltransferase	99.9
3glv_A	143	Lipopolysaccharide core biosynthesis protein; stru	99.89
3op1_A	308	Macrolide-efflux protein; structural genomics, PSI	99.87
2x0k_A	338	Riboflavin biosynthesis protein RIBF; riboflavin k	99.84
1mrz_A	293	Riboflavin kinase/FMN adenylyltransferase; rossman	99.83
3k9w_A	187	Phosphopantetheine adenylyltransferase; niaid, ssg	99.77
1qjc_A	158	Phosphopantetheine adenylyltransferase; coenzyme A	99.75
1o6b_A	169	Phosphopantetheine adenylyltransferase; structural	99.74
3nv7_A	157	Phosphopantetheine adenylyltransferase; helicobact	99.72
2qtr_A	189	Nicotinate (nicotinamide) nucleotide adenylyltran;	99.72
4f3r_A	162	Phosphopantetheine adenylyltransferase; phosphopan	99.7
1kam_A	194	Deamido-NAD(+), nicotinate-nucleotide adenylyltran	99.69
1od6_A	160	PPAT, phosphopantetheine adenylyltransferase; coen	99.67
3f3m_A	168	Phosphopantetheine adenylyltransferase; PPAT, coen	99.65
1k4m_A	213	NAMN adenylyltransferase; nucleotidyltransferase;	99.63
3nbk_A	177	Phosphopantetheine adenylyltransferase; PPAT, PHP;	99.62
3nd5_A	171	Phosphopantetheine adenylyltransferase; PPAT, coen	99.6
1vlh_A	173	Phosphopantetheine adenylyltransferase; TM0741, st	99.59
1yum_A	242	'probable nicotinate-nucleotide adenylyltransferas	99.56
2h29_A	189	Probable nicotinate-nucleotide adenylyltransferase	99.51
1ej2_A	181	Nicotinamide mononucleotide adenylyltransferase; d	99.48
3gmi_A	357	UPF0348 protein MJ0951; protein with unknown funct	99.48
2qjo_A	341	Bifunctional NMN adenylyltransferase/nudix hydrol;	99.48
3do8_A	148	Phosphopantetheine adenylyltransferase; protein wi	99.46
3h05_A	177	Uncharacterized protein VPA0413; nucleotidylyl, tr	99.43
1f9a_A	168	Hypothetical protein MJ0541; alpha/beta, transfera	99.38
1kqn_A	279	Nmnat, nicotinamide mononucleotide adenylyl transf	99.33
2ejc_A	280	Pantoate--beta-alanine ligase; X-RAY diffraction,	99.31
1nup_A	252	FKSG76; NAD biosynthesis, mitochondria, pyridine a	99.22
1lw7_A	365	Transcriptional regulator NADR; NMN, NMN adenylyl	99.2
3hl4_A	236	Choline-phosphate cytidylyltransferase A; rossmann	99.2
2qjt_B	352	Nicotinamide-nucleotide adenylyltransferase; two i	99.07
1v8f_A	276	Pantoate-beta-alanine ligase; rossmann fold, dimer	99.01
3ag6_A	283	Pantothenate synthetase; ATP-dependent enzyme, ATP	98.92
3nv7_A	157	Phosphopantetheine adenylyltransferase; helicobact	98.72
3glv_A	143	Lipopolysaccharide core biosynthesis protein; stru	98.69
4f3r_A	162	Phosphopantetheine adenylyltransferase; phosphopan	98.65
3cov_A	301	Pantothenate synthetase; pantothenate biosynthesis	98.61
2b7l_A	132	Glycerol-3-phosphate cytidylyltransferase; rossman	98.6
1coz_A	129	Protein (glycerol-3-phosphate cytidylyltransferase	98.59
1jhd_A	396	Sulfate adenylyltransferase; sulfurylase, APS, che	98.51
1v47_A	349	ATP sulfurylase; product binding complex, zinc, ri	98.49
3nbk_A	177	Phosphopantetheine adenylyltransferase; PPAT, PHP;	98.49
3do8_A	148	Phosphopantetheine adenylyltransferase; protein wi	98.46
1vlh_A	173	Phosphopantetheine adenylyltransferase; TM0741, st	98.44
3nd5_A	171	Phosphopantetheine adenylyltransferase; PPAT, coen	98.42
3k9w_A	187	Phosphopantetheine adenylyltransferase; niaid, ssg	98.4
3f3m_A	168	Phosphopantetheine adenylyltransferase; PPAT, coen	98.38
1qjc_A	158	Phosphopantetheine adenylyltransferase; coenzyme A	98.2
1lw7_A	365	Transcriptional regulator NADR; NMN, NMN adenylyl	98.12
2qjt_B	352	Nicotinamide-nucleotide adenylyltransferase; two i	98.09
1ej2_A	181	Nicotinamide mononucleotide adenylyltransferase; d	97.99
1o6b_A	169	Phosphopantetheine adenylyltransferase; structural	97.96
1f9a_A	168	Hypothetical protein MJ0541; alpha/beta, transfera	97.94
2qtr_A	189	Nicotinate (nicotinamide) nucleotide adenylyltran;	97.87
1od6_A	160	PPAT, phosphopantetheine adenylyltransferase; coen	97.87
1kam_A	194	Deamido-NAD(+), nicotinate-nucleotide adenylyltran	97.81
2ejc_A	280	Pantoate--beta-alanine ligase; X-RAY diffraction,	97.78
1yum_A	242	'probable nicotinate-nucleotide adenylyltransferas	97.77
2qjo_A	341	Bifunctional NMN adenylyltransferase/nudix hydrol;	97.76
2h29_A	189	Probable nicotinate-nucleotide adenylyltransferase	97.75
3uk2_A	283	Pantothenate synthetase; AMP, structural genomics,	97.69
3h05_A	177	Uncharacterized protein VPA0413; nucleotidylyl, tr	97.51
3inn_A	314	Pantothenate synthetase; ssgcid, SBRI, UW, decode,	97.45
1k4m_A	213	NAMN adenylyltransferase; nucleotidyltransferase;	97.43
3q12_A	287	Pantoate--beta-alanine ligase; structural genomics	97.22
1nup_A	252	FKSG76; NAD biosynthesis, mitochondria, pyridine a	96.82
1kqn_A	279	Nmnat, nicotinamide mononucleotide adenylyl transf	96.7
3mxt_A	285	Pantothenate synthetase; alpha-beta-alpha, structu	96.69
1r6x_A	395	ATP:sulfate adenylyltransferase; APS kinase-like d	96.59
2x0k_A	338	Riboflavin biosynthesis protein RIBF; riboflavin k	96.52
3q12_A	287	Pantoate--beta-alanine ligase; structural genomics	96.31
1g8f_A	511	Sulfate adenylyltransferase; alpha-beta protein, b	96.13
3op1_A	308	Macrolide-efflux protein; structural genomics, PSI	96.09
3gmi_A	357	UPF0348 protein MJ0951; protein with unknown funct	95.4
3n8h_A	264	Pantothenate synthetase; alpha-beta sandwich, liga	95.37
3mxt_A	285	Pantothenate synthetase; alpha-beta-alpha, structu	94.46
3inn_A	314	Pantothenate synthetase; ssgcid, SBRI, UW, decode,	94.22
2gks_A	546	Bifunctional SAT/APS kinase; transferase, sulfuryl	93.22
3ag6_A	283	Pantothenate synthetase; ATP-dependent enzyme, ATP	92.77
3n8h_A	264	Pantothenate synthetase; alpha-beta sandwich, liga	92.16
1v8f_A	276	Pantoate-beta-alanine ligase; rossmann fold, dimer	92.01
3cr8_A	552	Sulfate adenylyltranferase, adenylylsulfate kinase	91.4
1x6v_B	630	Bifunctional 3'-phosphoadenosine 5'- phosphosulfat	90.95
3cov_A	301	Pantothenate synthetase; pantothenate biosynthesis	90.83
1m8p_A	573	Sulfate adenylyltransferase; rossmann fold, phosph	90.13
3uk2_A	283	Pantothenate synthetase; AMP, structural genomics,	89.22
1v47_A	349	ATP sulfurylase; product binding complex, zinc, ri	81.6

>3elb_A Ethanolamine-phosphate cytidylyltransferase; kennedy pathway, CMP, CTP, phosphoethanolamine, cytidylyltra SGC, structural genomics consortium; HET: C5P; 2.00A {Homo sapiens}

Probab=100.00  E-value=7.7e-55  Score=417.90  Aligned_cols=237  Identities=49%  Similarity=0.856  Sum_probs=196.4

Q ss_pred             cCCCCeEEEEecccCcCCHHHHHHHHHHHHcCCeEEEEEeCChhhhhcCCCCCCCHHHHHHHHHHccCccEEEEcCCCcc
Q 021802           47 KKKKPVRVYMDGCFDMMHYGHCNALRQARALGDQLVVGVVSDAEIIANKGPPVTPLHERMIMVNAVKWVDEVISDAPYAI  126 (307)
Q Consensus        47 ~~~~~~~V~~~G~FD~lH~GH~~lL~qAk~~gd~LiVgV~sD~~i~~~Kg~pi~s~eER~~ll~~~k~VD~Vv~~~py~~  126 (307)
                      ..+++++||+.||||++|.||+++|++|++++|+|+|||++|+.+...|++|++|.+||++++++|+|||+|++..||..
T Consensus         3 ~~~~~~~v~~~G~FD~lH~GH~~lL~~A~~l~d~LiVgV~~d~~v~~~K~~pi~s~eER~~~l~~l~~VD~Vv~f~~~~~   82 (341)
T 3elb_A            3 GGRRAVRVWCDGCYDMVHYGHSNQLRQARAMGDYLIVGVHTDEEIAKHKGPPVFTQEERYKMVQAIKWVDEVVPAAPYVT   82 (341)
T ss_dssp             -CCCCCEEEEEECCCSCCHHHHHHHHHHHHTSSEEEEEECCHHHHHHHSSCCSSCHHHHHHHHHHBTTCCEEEETCCSSC
T ss_pred             CCCCceEEEEEeeCCCCCHHHHHHHHHHHHhCCcCEEEeecCHHHhccCCCCCCCHHHHHHHHHHcCCCCEEEecCCCCC
Confidence            34667789999999999999999999999999999999999998776777899999999999999999999999778777


Q ss_pred             cHHHHHHHHHhcCccEEEEcCCCCcCCCCCchHHHHHhCCEEEEcCCCCCCCHHHHHHHHHhhhhcCCccCcC--Ccchh
Q 021802          127 TKDFMKKLFDEYNIDYIIHGDDPCVLPDGTDAYELAKKAGRYKQIKRTEGVSSTDIVGRMLLCVRERSISDSH--NHSSL  204 (307)
Q Consensus       127 t~dfle~ll~~l~~d~VV~GdD~~fg~~g~d~y~~lk~~g~v~vv~rt~~VSST~Ir~rIl~~~~~~~~~~~~--~~~~~  204 (307)
                      +++|+    ++++||++|+|+||++|.++.+.|+.++++|+++.+++++++|||+|++||++++++|+.....  ...+.
T Consensus        83 ~~efi----~~~~~d~vV~G~D~~~g~~~~~~~~~~k~~G~~~~~~~t~g~STT~ii~ri~~~~~~~~~~~~~~~~~~~~  158 (341)
T 3elb_A           83 TLETL----DKYNCDFCVHGNDITLTVDGRDTYEEVKQAGRYRECKRTQGVSTTDLVGRMLLVTKAHHSSQEMSSEYREY  158 (341)
T ss_dssp             CHHHH----HHTTCSEEEECSCCCBCTTSCBTTHHHHHTTCEEECCCCTTCCHHHHHHHHHC------------------
T ss_pred             HHHHH----HHhCCCEEEECCCCCCCCCCcchHHHHHhCCEEEEeCCCCCCCHHHHHHHHHHhccccccccccchhhHHH
Confidence            78887    4689999999999999999999999999999999999999999999999999999987653211  11122


Q ss_pred             hhhhccCCCccccccccc-cccccccccccceehcccCCCCCCCCCeEEEEeCcccccCHHHHHHHHHHHhCCC--EEEE
Q 021802          205 QRQFSHGHNQKVEERGSG-GTRVSHFLPTSRRIVQFSNGKGPGPDARIIYIDGAFDLFHAGHVEILRIARGLGD--FLLV  281 (307)
Q Consensus       205 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~t~~~i~~f~~~~~~~~~~~~v~~~G~FDl~H~GHi~~L~~a~~~g~--~liV  281 (307)
                      ...++++..      +.+ |+.+++|++|+++|.||++|+.|.+++++||++|+||+||.||+++|++|+++||  +|||
T Consensus       159 ~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~f~~g~~~~~~~~iv~~~GsFD~~h~GHl~~L~rA~~l~D~~~LiV  232 (341)
T 3elb_A          159 ADSFGKCPG------GRNPWTGVSQFLQTSQKIIQFASGKEPQPGETVIYVAGAFDLFHIGHVDFLEKVHRLAERPYIIA  232 (341)
T ss_dssp             -------------------CCCCCCCCCCHHHHHHHCCCCCCCTTCEEEEEEECCTTCCHHHHHHHHHHHTTSSSEEEEE
T ss_pred             HHhhccCcc------ccCCCcceecccCCcceeeeeccCCCCCCCCEEEEEecccCCCCHHHHHHHHHHHHhCCCCEEEE
Confidence            233443322      223 7888999999999999999999999999999999999999999999999999999  9999


Q ss_pred             EEeCcccccccC
Q 021802          282 GIHNDQTVRLKN  293 (307)
Q Consensus       282 gv~~D~~v~~~~  293 (307)
                      ||++|+++++.|
T Consensus       233 gV~~d~~v~~~K  244 (341)
T 3elb_A          233 GLHFDQEVNHYK  244 (341)
T ss_dssp             EEECHHHHHHHH
T ss_pred             EEccCHhhHhhc
Confidence            999999988654

>3hl4_A Choline-phosphate cytidylyltransferase A; rossmann fold, phospholipid synthesis, phosphatidylcholine, phosphocholine, CTP, CDP-choline; HET: CDC; 2.20A {Rattus norvegicus}

Probab=99.98  E-value=4.3e-32  Score=247.62  Aligned_cols=144  Identities=39%  Similarity=0.619  Sum_probs=131.4

Q ss_pred             HhhhcCCCCeEEEEecccCcCCHHHHHHHHHHHHc--CCeEEEEEeCChhhhhcCCCCCCCHHHHHHHHHHccCccEEEE
Q 021802           43 QWTRKKKKPVRVYMDGCFDMMHYGHCNALRQARAL--GDQLVVGVVSDAEIIANKGPPVTPLHERMIMVNAVKWVDEVIS  120 (307)
Q Consensus        43 ~~~~~~~~~~~V~~~G~FD~lH~GH~~lL~qAk~~--gd~LiVgV~sD~~i~~~Kg~pi~s~eER~~ll~~~k~VD~Vv~  120 (307)
                      ....+.+++++||+.|+||++|.||+++|++|+++  +|+|+|||++|+.+...|++|+|+.+||++++++|+|||+|++
T Consensus        68 ~~~~~~~~~~~V~~~GtFD~~H~GHl~iL~rAk~lf~gD~LIVgV~~D~~v~~~Kg~pi~s~eER~e~v~~~k~VD~Vvv  147 (236)
T 3hl4_A           68 CRGTPCERPVRVYADGIFDLFHSGHARALMQAKNLFPNTYLIVGVCSDELTHNFKGFTVMNENERYDAVQHCRYVDEVVR  147 (236)
T ss_dssp             HHCCCTTSCEEEEEEECCTTCCHHHHHHHHHHHTSSSSEEEEEEECCHHHHHHHTCCCSSCHHHHHHHHHTBTTCSEEES
T ss_pred             hcCCCCCCCeEEEEeccCCCCCHHHHHHHHHHHHhcCCCeEEEEEcccHHHhhcCCCCCCCHHHHHHHHHHhCCCCeEEE
Confidence            33345567889999999999999999999999999  5899999999998877788899999999999999999999999


Q ss_pred             cCCCcccHHHHHHHHHhcCccEEEEcCCCCcCCCCCchHHHHHhCCEEEEcCCCCCCCHHHHHHHHHhhh
Q 021802          121 DAPYAITKDFMKKLFDEYNIDYIIHGDDPCVLPDGTDAYELAKKAGRYKQIKRTEGVSSTDIVGRMLLCV  190 (307)
Q Consensus       121 ~~py~~t~dfle~ll~~l~~d~VV~GdD~~fg~~g~d~y~~lk~~g~v~vv~rt~~VSST~Ir~rIl~~~  190 (307)
                      ++||.++.+|++    +++||+||+|+|+.++.++.|.|+.+++.|++..++|++++|||+|++||+...
T Consensus       148 ~~p~~l~~d~i~----~~~~d~Vv~GDd~~~~~~~~d~y~~lk~~G~~~~v~rt~giSTT~Ii~RI~~~~  213 (236)
T 3hl4_A          148 NAPWTLTPEFLA----EHRIDFVAHDDIPYSSAGSDDVYKHIKEAGMFAPTQRTEGISTSDIITRIVRDY  213 (236)
T ss_dssp             SCCSSCCHHHHH----HTTCCEEEEESSCCCCSSCSCTTHHHHHTTCEEEECCCTTCCHHHHHHHHHHHH
T ss_pred             CCcCcCcHHHHH----HcCCCEEEECCccccCCCchhHHHHHHhCCeEEEeccCCCCCHHHHHHHHHHhH
Confidence            999998888874    689999999999988888889999999999999999999999999999998653

>3elb_A Ethanolamine-phosphate cytidylyltransferase; kennedy pathway, CMP, CTP, phosphoethanolamine, cytidylyltra SGC, structural genomics consortium; HET: C5P; 2.00A {Homo sapiens}

Probab=99.95  E-value=7.8e-28  Score=230.68  Aligned_cols=139  Identities=31%  Similarity=0.619  Sum_probs=126.0

Q ss_pred             hcCCCCeEEEEecccCcCCHHHHHHHHHHHHcCC--eEEEEEeCChhhhhcCC--CCCCCHHHHHHHHHHccCccEEEEc
Q 021802           46 RKKKKPVRVYMDGCFDMMHYGHCNALRQARALGD--QLVVGVVSDAEIIANKG--PPVTPLHERMIMVNAVKWVDEVISD  121 (307)
Q Consensus        46 ~~~~~~~~V~~~G~FD~lH~GH~~lL~qAk~~gd--~LiVgV~sD~~i~~~Kg--~pi~s~eER~~ll~~~k~VD~Vv~~  121 (307)
                      .+.+..++|++.||||++|.||+++|++|++++|  +|+|||++|+.+...|+  +|+||.+||++++++|++||+|+++
T Consensus       193 ~~~~~~~iv~~~GsFD~~h~GHl~~L~rA~~l~D~~~LiVgV~~d~~v~~~Kg~~~pi~~~~ER~~~v~~~~~vd~V~v~  272 (341)
T 3elb_A          193 EPQPGETVIYVAGAFDLFHIGHVDFLEKVHRLAERPYIIAGLHFDQEVNHYKGKNYPIMNLHERTLSVLACRYVSEVVIG  272 (341)
T ss_dssp             CCCTTCEEEEEEECCTTCCHHHHHHHHHHHTTSSSEEEEEEEECHHHHHHHHCTTCCSSCHHHHHHHHHTBTTCCEEEEE
T ss_pred             CCCCCCEEEEEecccCCCCHHHHHHHHHHHHhCCCCEEEEEEccCHhhHhhcCCCCCCCCHHHHHHHHHHcCCCCCEEEC
Confidence            3444567899999999999999999999999999  99999999998887787  5999999999999999999999999


Q ss_pred             CCCcccHHHHHHHHHhcCccEEEEcCCCCc-CCCCCchHHHHHhCCEEEEcCCCCCCCHHHHHHHHHh
Q 021802          122 APYAITKDFMKKLFDEYNIDYIIHGDDPCV-LPDGTDAYELAKKAGRYKQIKRTEGVSSTDIVGRMLL  188 (307)
Q Consensus       122 ~py~~t~dfle~ll~~l~~d~VV~GdD~~f-g~~g~d~y~~lk~~g~v~vv~rt~~VSST~Ir~rIl~  188 (307)
                      +||.++.+|++    +++++++|+|+|+.. ...|.|.|...+.+|+++.+++++++|||+|++||+.
T Consensus       273 ~~~~l~~~~~~----~~~~~~iv~G~d~~~~~~~g~d~y~~~k~~G~~~~i~~~~~~STt~ii~RI~~  336 (341)
T 3elb_A          273 APYAVTAELLS----HFKVDLVCHGKTEIIPDRDGSDPYQEPKRRGIFRQIDSGSNLTTDLIVQRIIT  336 (341)
T ss_dssp             ECSSCCHHHHH----HTTCSEEEECSSCCCCCTTSCCTTHHHHHHTCEEECCCSCCCCHHHHHHHHHC
T ss_pred             CCCcchHHHHH----hcCCcEEEECCCCccccCCccchHHHHHhCCEEEEcCCCCCCCHHHHHHHHHH
Confidence            99988888874    689999999999874 3556789999999999999999999999999999974

>2b7l_A Glycerol-3-phosphate cytidylyltransferase; rossmann fold; 3.00A {Staphylococcus aureus}

Probab=99.91  E-value=5.4e-24  Score=176.33  Aligned_cols=127  Identities=28%  Similarity=0.481  Sum_probs=94.1

Q ss_pred             eEEEEecccCcCCHHHHHHHHHHHHcCCeEEEEEeCChhhhhcCC-CCCCCHHHHHHHHHHccCccEEEEcCCCcccHHH
Q 021802           52 VRVYMDGCFDMMHYGHCNALRQARALGDQLVVGVVSDAEIIANKG-PPVTPLHERMIMVNAVKWVDEVISDAPYAITKDF  130 (307)
Q Consensus        52 ~~V~~~G~FD~lH~GH~~lL~qAk~~gd~LiVgV~sD~~i~~~Kg-~pi~s~eER~~ll~~~k~VD~Vv~~~py~~t~df  130 (307)
                      ++++++|+||++|.||+.++++|++.+++++|++++|+.... ++ +|++|.+||++++++++++|.++++.+|.   +|
T Consensus         2 ~~~~~~G~FDp~H~GH~~li~~a~~~~~~~~v~v~~~~~~~~-~~~~~l~~~~eR~~~l~~~~~~d~v~~~~~~~---~~   77 (132)
T 2b7l_A            2 KRVITYGTYDLLHYGHIELLRRAREMGDYLIVALSTDEFNQI-KHKKSYYDYEQRKMMLESIRYVDLVIPEKGWG---QK   77 (132)
T ss_dssp             CEEEEEECCCSCCHHHHHHHHHHHHTSSEEEEEEECHHHHHH-TTCCCSSCHHHHHHHHHTBTTCCEEEEECCGG---GH
T ss_pred             eEEEEeeecCcCCHHHHHHHHHHHHhCCcEEEEEECCHHHhc-cCCCCCCCHHHHHHHHHhcCCCCEEEECCChH---HH
Confidence            368999999999999999999999999999999999884322 33 68999999999999997799998855543   67


Q ss_pred             HHHHHHhcCccEEEEcCCCCcCCCCCchHHHHHhCCEEEEcCCCCCCCHHHHHHHHHhh
Q 021802          131 MKKLFDEYNIDYIIHGDDPCVLPDGTDAYELAKKAGRYKQIKRTEGVSSTDIVGRMLLC  189 (307)
Q Consensus       131 le~ll~~l~~d~VV~GdD~~fg~~g~d~y~~lk~~g~v~vv~rt~~VSST~Ir~rIl~~  189 (307)
                      ++. +++++++++|+|+|+..      .++.++..+++.++++.+.||||.||++|.+.
T Consensus        78 ~~~-~~~~~~~~iv~G~D~~~------~~~~L~~~~~v~~i~~~~~iSST~IR~~i~~g  129 (132)
T 2b7l_A           78 EDD-VEKFDVDVFVMGHDWEG------EFDFLKDKCEVIYLKRTEGISTTKIKQELYGK  129 (132)
T ss_dssp             HHH-HHHTTCCEEEECGGGTT------TTGGGTTTSEEEECSSCC--------------
T ss_pred             HHH-HHHcCCCEEEECCCCcC------cHHHHHhCCEEEEECCCCCcCHHHHHHHHHhc
Confidence            765 57799999999999842      23456677899999999999999999998754

>1coz_A Protein (glycerol-3-phosphate cytidylyltransferase); HET: CTP; 2.00A {Bacillus subtilis} SCOP: c.26.1.2 PDB: 1n1d_A*

Probab=99.90  E-value=6.9e-24  Score=174.82  Aligned_cols=126  Identities=29%  Similarity=0.493  Sum_probs=104.1

Q ss_pred             eEEEEecccCcCCHHHHHHHHHHHHcCCeEEEEEeCChhhhhcCC-CCCCCHHHHHHHHHHccCccEEEEcCCCcccHHH
Q 021802           52 VRVYMDGCFDMMHYGHCNALRQARALGDQLVVGVVSDAEIIANKG-PPVTPLHERMIMVNAVKWVDEVISDAPYAITKDF  130 (307)
Q Consensus        52 ~~V~~~G~FD~lH~GH~~lL~qAk~~gd~LiVgV~sD~~i~~~Kg-~pi~s~eER~~ll~~~k~VD~Vv~~~py~~t~df  130 (307)
                      ++++++|+|||+|.||+.++++|++.+|+++|++++|+... .|+ ++++|.+||++++++++++|.++...+|.   +|
T Consensus         2 ~~~~~~G~FDp~H~GH~~li~~a~~~~d~~~v~v~~~~~~~-~~~~~~l~~~~eR~~~l~~~~~~d~v~~~~~~~---~~   77 (129)
T 1coz_A            2 KKVITYGTFDLLHWGHIKLLERAKQLGDYLVVAISTDEFNL-QKQKKAYHSYEHRKLILETIRYVDEVIPEKNWE---QK   77 (129)
T ss_dssp             CEEEEEECCCSCCHHHHHHHHHHHTTSSEEEEEEECHHHHH-HHTCCCSSCHHHHHHHHTTBTTCCEEEEECCST---TH
T ss_pred             cEEEEEEeCCCCCHHHHHHHHHHHHhCCCeEEEEECCHHHh-cCCCCCCCCHHHHHHHHHhcCCCCEEEeCCCHH---HH
Confidence            36899999999999999999999999999999999987322 233 68999999999999998899998766654   56


Q ss_pred             HHHHHHhcCccEEEEcCCCCcCCCCCchHHHHHhCCEEEEcCCCCCCCHHHHHHHHHh
Q 021802          131 MKKLFDEYNIDYIIHGDDPCVLPDGTDAYELAKKAGRYKQIKRTEGVSSTDIVGRMLL  188 (307)
Q Consensus       131 le~ll~~l~~d~VV~GdD~~fg~~g~d~y~~lk~~g~v~vv~rt~~VSST~Ir~rIl~  188 (307)
                      ++. +++++++++++|+||.      +.++.+++.+++.++++...||||.||+++.+
T Consensus        78 ~~~-l~~~~~~~iv~G~D~~------~~~~~L~~~~~v~~~~~~~~iSST~IR~~i~~  128 (129)
T 1coz_A           78 KQD-IIDHNIDVFVMGDDWE------GKFDFLKDQCEVVYLPRTEGISTTKIKEEIAG  128 (129)
T ss_dssp             HHH-HHHTTCSEEEEEGGGT------TTTGGGTTTSEEEEECCCTTCCHHHHHHTC--
T ss_pred             HHH-HHHhCCcEEEECCCCC------CcHHHHHhCCeEEEcCCCCCcCHHHHHHHHHh
Confidence            655 4678999999999984      12345677789999999999999999998753

>3glv_A Lipopolysaccharide core biosynthesis protein; structural GEN PSI, MCSG, protein structure initiative; HET: AMP; 1.99A {Thermoplasma volcanium GSS1}

Probab=99.89  E-value=1e-23  Score=178.17  Aligned_cols=132  Identities=27%  Similarity=0.363  Sum_probs=89.2

Q ss_pred             CeEEEEecccCcCCHHHHHHHHHHHHcCCeEEEEEeCChhhhhcCC-CCCCCHHHHHHHHHHccCccEEEEcCCCcccHH
Q 021802           51 PVRVYMDGCFDMMHYGHCNALRQARALGDQLVVGVVSDAEIIANKG-PPVTPLHERMIMVNAVKWVDEVISDAPYAITKD  129 (307)
Q Consensus        51 ~~~V~~~G~FD~lH~GH~~lL~qAk~~gd~LiVgV~sD~~i~~~Kg-~pi~s~eER~~ll~~~k~VD~Vv~~~py~~t~d  129 (307)
                      +++++++|+||++|.||+.+|++|++++++++|++++|+.... |+ ++++|.+||+++++++++||.+++..|    ++
T Consensus         2 m~~v~~~G~FD~vH~GH~~li~~a~~~~~~~~v~v~~~~~~~~-~~~~~l~~~~eR~~~l~~~~~vd~v~~~~~----~~   76 (143)
T 3glv_A            2 MIRVMATGVFDILHLGHIHYLKESKKLGDELVVVVARDSTARN-NGKIPIFDENSRLALISELKVVDRAILGHE----GD   76 (143)
T ss_dssp             CCEEEEEECCSSCCHHHHHHHHHHHTTSSEEEEEECCHHHHHH-TTCCCSSCHHHHHHHHTTBTTCSEEEECCT----TC
T ss_pred             ceEEEEEeecCCCCHHHHHHHHHHHHhCCCcEEEEECCcchhh-cCCCCCCCHHHHHHHHHhcCCCCEEEEcCc----hh
Confidence            3579999999999999999999999999999999999886554 43 789999999999999977999998544    34


Q ss_pred             HHHHHHHhcCccEEEEcCCCCcCCCCCchHHHHH-hCCEEEEcCC----CCCCCHHHHHHHHHhhh
Q 021802          130 FMKKLFDEYNIDYIIHGDDPCVLPDGTDAYELAK-KAGRYKQIKR----TEGVSSTDIVGRMLLCV  190 (307)
Q Consensus       130 fle~ll~~l~~d~VV~GdD~~fg~~g~d~y~~lk-~~g~v~vv~r----t~~VSST~Ir~rIl~~~  190 (307)
                      |++ +++++++++||+|+|++|+..  +..+..+ .+..+.+++.    .+.||||.||++|....
T Consensus        77 f~~-~~~~l~~~~iv~G~d~~f~~~--~l~~~~~~~g~~v~vv~~~~~~~~~iSST~IR~~i~~~~  139 (143)
T 3glv_A           77 MMK-TVIEVKPDIITLGYDQKFDEA--ELQSKINKLGITVKIVRISKYDGQLNSSSSVRKKIMELI  139 (143)
T ss_dssp             HHH-HHHHHCCSEEEECTTCHHHHH--HHHHHHHHHTCCCEEEECCCCC-----------------
T ss_pred             HHH-HHHhcCCCEEEECCCCCCCHH--HHHHHHHHcCCeEEEEEeeccCCCcCCHHHHHHHHHHHh
Confidence            765 567899999999999998421  1122222 2334444433    35799999999997654

>3op1_A Macrolide-efflux protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: PEG; 2.49A {Streptococcus pneumoniae}

Probab=99.87  E-value=5.2e-22  Score=187.92  Aligned_cols=136  Identities=19%  Similarity=0.163  Sum_probs=110.3

Q ss_pred             CeEEEEecccCcCCHHHHHHHHHHHHcCCe-----EEEEEeCChh-hhhc---CC-CCCCCHHHHHHHHHHccCccEEEE
Q 021802           51 PVRVYMDGCFDMMHYGHCNALRQARALGDQ-----LVVGVVSDAE-IIAN---KG-PPVTPLHERMIMVNAVKWVDEVIS  120 (307)
Q Consensus        51 ~~~V~~~G~FD~lH~GH~~lL~qAk~~gd~-----LiVgV~sD~~-i~~~---Kg-~pi~s~eER~~ll~~~k~VD~Vv~  120 (307)
                      ...|+++|+|||+|.||+++|++|++.+++     +++.+.++|. +...   +. ++++|.+||.++++++ +||.+++
T Consensus        20 ~~~vvtiG~FDGvH~GHq~li~~a~~~a~~~~~~~vV~TFdphP~~v~~~~~~~~~~~Lt~~~eK~~ll~~l-GVD~v~~   98 (308)
T 3op1_A           20 SDSVVVLGYFDGIHKGHQELFRVANKAARKDLLPIVVMTFNESPKIALEPYHPDLFLHILNPAERERKLKRE-GVEELYL   98 (308)
T ss_dssp             SCEEEEESCCSSCCHHHHHHHHHHHHHSSTTCCCEEEEEESSCTHHHHSCCCGGGGCBSSCHHHHHHHHHHH-TCCEEEE
T ss_pred             CCeEEEEecCCcccHHHHHHHHHHHHHHHhcCCceEEEEecCCHHHHhCccccCCcccCCCHHHHHHHHHHc-CCCEEEE
Confidence            346999999999999999999999999854     3334444443 2221   22 5799999999999999 8999999


Q ss_pred             cCCCcc------cHHHHHHHHHhcCccEEEEcCCCCcCCCCCchHHHHHhCC--EEEEcCC----CCCCCHHHHHHHHHh
Q 021802          121 DAPYAI------TKDFMKKLFDEYNIDYIIHGDDPCVLPDGTDAYELAKKAG--RYKQIKR----TEGVSSTDIVGRMLL  188 (307)
Q Consensus       121 ~~py~~------t~dfle~ll~~l~~d~VV~GdD~~fg~~g~d~y~~lk~~g--~v~vv~r----t~~VSST~Ir~rIl~  188 (307)
                       .||+-      +++|+++++++++++.+|+|+||+||+ +.++.+.+++.+  ++.++++    .+.||||.||+.|..
T Consensus        99 -~~F~~~~a~ls~e~Fv~~ll~~l~~~~ivvG~DfrFG~-r~G~~~~L~~~~~~~V~~v~~~~~~~~~ISST~IR~~L~~  176 (308)
T 3op1_A           99 -LDFSSQFASLTAQEFFATYIKAMNAKIIVAGFDYTFGS-DKKTAEDLKNYFDGEVIIVPPVEDEKGKISSTRIRQAILD  176 (308)
T ss_dssp             -ECCCHHHHTCCHHHHHHHHHHHHTEEEEEEETTCCBTT-TTBCSTTHHHHCSSEEEEECCCBCSSCBCCHHHHHHHHHH
T ss_pred             -ecCCHHHHcCCHHHHHHHHHHHcCCCEEEECcCCCCCC-cCCCHHHHHHhCCCCEEEeCCEecCCceEeHHHHHHHHHc
Confidence             89862      478998888899999999999999999 887777887765  4778877    357999999999975


Q ss_pred             h
Q 021802          189 C  189 (307)
Q Consensus       189 ~  189 (307)
                      +
T Consensus       177 G  177 (308)
T 3op1_A          177 G  177 (308)
T ss_dssp             T
T ss_pred             C
Confidence            4

>2x0k_A Riboflavin biosynthesis protein RIBF; riboflavin kinase, nucleotide-binding, transferase, ATP-BIND multifunctional enzyme; 1.95A {Corynebacterium ammoniagenes}

Probab=99.84  E-value=5.2e-21  Score=183.20  Aligned_cols=136  Identities=15%  Similarity=0.190  Sum_probs=108.7

Q ss_pred             eEEEEecccCcCCHHHHHHHHHHHHcCCe---EEEEEeCCh--h-hh-hcCC-CCCCCHHHHHHHHHHccCccEEEEcCC
Q 021802           52 VRVYMDGCFDMMHYGHCNALRQARALGDQ---LVVGVVSDA--E-II-ANKG-PPVTPLHERMIMVNAVKWVDEVISDAP  123 (307)
Q Consensus        52 ~~V~~~G~FD~lH~GH~~lL~qAk~~gd~---LiVgV~sD~--~-i~-~~Kg-~pi~s~eER~~ll~~~k~VD~Vv~~~p  123 (307)
                      ..|+++|+||++|.||+.+|++|++.+++   ..++++.|+  . +. ..+. +++++.+||+++++++ +||.+++ .|
T Consensus        16 ~~vvtiG~FDGvH~GHq~Li~~a~~~a~~~~~~~vvvtFdphP~~v~~~~~~~~~L~~~~eR~~ll~~~-gVD~v~v-~~   93 (338)
T 2x0k_A           16 NSAVTIGVFDGVHRGHQKLINATVEKAREVGAKAIMVTFDPHPVSVFLPRRAPLGITTLAERFALAESF-GIDGVLV-ID   93 (338)
T ss_dssp             CEEEEESCCTTCCHHHHHHHHHHHHHHHHHTCEEEEEEESSCHHHHHSTTCSCCBSSCHHHHHHHHHHT-TCSEEEE-EC
T ss_pred             CeEEEEEeCCcccHHHHHHHHHHHHHHHHcCCcEEEEEecCCHHHHcCCccCCCCCCCHHHHHHHHHhc-CCCEEEE-cc
Confidence            46999999999999999999999998754   345555554  2 22 1222 5699999999999998 8999998 78


Q ss_pred             Cc-----c-cHHHHHH-HHHhcCccEEEEcCCCCcCCCCCchHHHHHhC----CEEEEcCC----CCCCCHHHHHHHHHh
Q 021802          124 YA-----I-TKDFMKK-LFDEYNIDYIIHGDDPCVLPDGTDAYELAKKA----GRYKQIKR----TEGVSSTDIVGRMLL  188 (307)
Q Consensus       124 y~-----~-t~dfle~-ll~~l~~d~VV~GdD~~fg~~g~d~y~~lk~~----g~v~vv~r----t~~VSST~Ir~rIl~  188 (307)
                      |+     . .++|++. +.++++++++|+|+||+||.++.+..+.+++.    .++.++++    ...||||.||+.|..
T Consensus        94 F~~~~a~ls~e~Fi~~il~~~l~~~~ivvG~Df~FG~~r~g~~~~L~~~~~~g~~V~~v~~~~~~~~~ISST~IR~~L~~  173 (338)
T 2x0k_A           94 FTRELSGTSPEKYVEFLLEDTLHASHVVVGANFTFGENAAGTADSLRQICQSRLTVDVIDLLDDEGVRISSTTVREFLSE  173 (338)
T ss_dssp             TTTSSSSCCHHHHHHHCCCCCTCEEEEEEETTCEESGGGCEEHHHHHHHTTTTSEEEEECCCEETTEECSHHHHHHHHHT
T ss_pred             ccHHHHhCCHHHHHHHHHHhhcCCCEEEEeecCCCCCCCCCCHHHHHHHhcCCeEEEEECcEecCCcccccchHHHHHhc
Confidence            74     2 3689987 55678999999999999999988777777653    47778887    357999999999875


Q ss_pred             h
Q 021802          189 C  189 (307)
Q Consensus       189 ~  189 (307)
                      .
T Consensus       174 G  174 (338)
T 2x0k_A          174 G  174 (338)
T ss_dssp             T
T ss_pred             C
Confidence            4

>1mrz_A Riboflavin kinase/FMN adenylyltransferase; rossmann fold, flavin binding domain, 6-stranded beta barrel nucleotide binding domain; HET: CIT; 1.90A {Thermotoga maritima} SCOP: b.43.5.1 c.26.1.3 PDB: 1s4m_A* 1t6x_A* 1t6y_A* 1t6z_A* 2i1l_A

Probab=99.83  E-value=1.7e-20  Score=176.51  Aligned_cols=130  Identities=17%  Similarity=0.220  Sum_probs=102.0

Q ss_pred             EEEecccCcCCHHHHHHHHHHHHcCCe-----EEEEEeCChhhhhcC-CCCCCCHHHHHHHHHHccCccEEEEcCCC---
Q 021802           54 VYMDGCFDMMHYGHCNALRQARALGDQ-----LVVGVVSDAEIIANK-GPPVTPLHERMIMVNAVKWVDEVISDAPY---  124 (307)
Q Consensus        54 V~~~G~FD~lH~GH~~lL~qAk~~gd~-----LiVgV~sD~~i~~~K-g~pi~s~eER~~ll~~~k~VD~Vv~~~py---  124 (307)
                      |+++|+||++|.||+++|++|++.+++     +++.+.++|.+...+ .++++|.+||+++++++.   .+++ .||   
T Consensus         2 vvtiG~FDgvH~GH~~ll~~a~~~a~~~~~~~vVvtFdphP~~l~~~~~~~l~~~~eR~~ll~~lg---~~~v-~~F~~~   77 (293)
T 1mrz_A            2 VVSIGVFDGVHIGHQKVLRTMKEIAFFRKDDSLIYTISYPPEYFLPDFPGLLMTVESRVEMLSRYA---RTVV-LDFFRI   77 (293)
T ss_dssp             CEEEECCTTCCHHHHHHHHHHHHHHHHHTCCCEEEEESSCGGGGSTTCCCBSSCHHHHHHHHTTTS---CEEE-ECHHHH
T ss_pred             EEEEeeCccccHHHHHHHHHHHHHHHHcCCeEEEEEecCCHHHhCCCCCCCCCCHHHHHHHHHhCC---CEEE-EEhHHh
Confidence            789999999999999999999998865     344444445333222 257999999999999984   3333 455   


Q ss_pred             --cccHHHHHHHHHhcCccEEEEcCCCCcCCCCCchHHHHHh-CCEEEEcCCC----CCCCHHHHHHHHHhh
Q 021802          125 --AITKDFMKKLFDEYNIDYIIHGDDPCVLPDGTDAYELAKK-AGRYKQIKRT----EGVSSTDIVGRMLLC  189 (307)
Q Consensus       125 --~~t~dfle~ll~~l~~d~VV~GdD~~fg~~g~d~y~~lk~-~g~v~vv~rt----~~VSST~Ir~rIl~~  189 (307)
                        ..+++|++.++  ++++++|+|+||+||+++.+.++.+++ ++++.+++..    ..||||.||+.|...
T Consensus        78 a~ls~~~Fi~~il--l~~~~iVvG~Df~fG~~~~g~~~~L~~~G~~V~~v~~~~~~~~~iSST~IR~~L~~G  147 (293)
T 1mrz_A           78 KDLTPEGFVERYL--SGVSAVVVGRDFRFGKNASGNASFLRKKGVEVYEIEDVVVQGKRVSSSLIRNLVQEG  147 (293)
T ss_dssp             TTCCHHHHHHHHC--TTCCEEEEETTCCBSGGGCBCHHHHHHTTCEEEEECCCEETTEECCHHHHHHHHHTT
T ss_pred             hcCCHHHHHHHHh--cCCCEEEECCCCCCCCCCCCCHHHHHhCCCEEEEECCEEeCCccccHhHHHHHHhcC
Confidence              23478988766  899999999999999988877777776 4688888863    579999999999765

>3k9w_A Phosphopantetheine adenylyltransferase; niaid, ssgcid, seattle structural genomics center for infect disease, coenzyme A, COA; HET: 4PS ADE PG4; 1.60A {Burkholderia pseudomallei} PDB: 3ikz_A* 3pxu_A*

Probab=99.77  E-value=8.7e-19  Score=155.05  Aligned_cols=129  Identities=23%  Similarity=0.249  Sum_probs=94.9

Q ss_pred             CeEEEEecccCcCCHHHHHHHHHHHHcCCeEEEEEeCChhhhhcCCCCCCCHHHHHHHHHH-ccCccEEEEcCCCc-ccH
Q 021802           51 PVRVYMDGCFDMMHYGHCNALRQARALGDQLVVGVVSDAEIIANKGPPVTPLHERMIMVNA-VKWVDEVISDAPYA-ITK  128 (307)
Q Consensus        51 ~~~V~~~G~FD~lH~GH~~lL~qAk~~gd~LiVgV~sD~~i~~~Kg~pi~s~eER~~ll~~-~k~VD~Vv~~~py~-~t~  128 (307)
                      .+++++.|+||++|.||+.++++|++++|+++++|.+++    .| +|+++.+||+++++. ++++|.+.+ .+|+ ++.
T Consensus        22 mki~v~~GsFDpiH~GHl~li~~A~~~~d~viv~v~~~p----~K-~~l~s~eeR~~ml~~~~~~v~~v~v-~~f~~~~~   95 (187)
T 3k9w_A           22 MVVAVYPGTFDPLTRGHEDLVRRASSIFDTLVVGVADSR----AK-KPFFSLEERLKIANEVLGHYPNVKV-MGFTGLLK   95 (187)
T ss_dssp             CCEEEEEECCTTCCHHHHHHHHHHHHHSSEEEEEEECCG----GG-CCSSCHHHHHHHHHHHHTTCTTEEE-EEESSCHH
T ss_pred             cEEEEEEEeCCcCcHHHHHHHHHHHHHCCcEEEEEecCC----cc-CCCCCHHHHHHHHHHHhccCCcEEE-EechhhHH
Confidence            467999999999999999999999999999999999875    34 589999999999999 689999987 5664 344


Q ss_pred             HHHHHHHHhcCccEEEEc----CCCCcCCCCCchHHHHHhCCEEEEcCCC---CCCCHHHHHHHHHhh
Q 021802          129 DFMKKLFDEYNIDYIIHG----DDPCVLPDGTDAYELAKKAGRYKQIKRT---EGVSSTDIVGRMLLC  189 (307)
Q Consensus       129 dfle~ll~~l~~d~VV~G----dD~~fg~~g~d~y~~lk~~g~v~vv~rt---~~VSST~Ir~rIl~~  189 (307)
                      +++    ++++++++|+|    .||.+...-....+.+....+...+.+.   ..||||.||+++...
T Consensus        96 d~l----~~l~~~~iv~G~r~~~Df~~E~~la~~nr~l~~~ietv~l~~~~~~~~ISST~IRe~~~~g  159 (187)
T 3k9w_A           96 DFV----RANDARVIVRGLRAVSDFEYEFQMAGMNRYLLPDVETMFMTPSDQYQFISGTIVREIAQLG  159 (187)
T ss_dssp             HHH----HHTTCSEEEEECCTTSCHHHHHHHHHHHHHHCTTCEEEEECCCGGGTTCCHHHHHHHHHTT
T ss_pred             HHH----HHcCCCEEEECCCcccccchHHHHHHHHHHhCCCCcEEEEecccccccccHHHHHHHHHcC
Confidence            444    56899999999    5554311000000111112344445444   479999999998754

>1qjc_A Phosphopantetheine adenylyltransferase; coenzyme A biosynthesis, nucleotidyltransferase; HET: PNS; 1.64A {Escherichia coli} SCOP: c.26.1.3 PDB: 1h1t_A* 1gn8_A* 1b6t_A* 3l92_A* 3l93_A

Probab=99.75  E-value=3e-18  Score=145.02  Aligned_cols=128  Identities=14%  Similarity=0.176  Sum_probs=93.9

Q ss_pred             eEEEEecccCcCCHHHHHHHHHHHHcCCeEEEEEeCChhhhhcCCCCCCCHHHHHHHHHH-ccCccEEEEcCCCc-ccHH
Q 021802           52 VRVYMDGCFDMMHYGHCNALRQARALGDQLVVGVVSDAEIIANKGPPVTPLHERMIMVNA-VKWVDEVISDAPYA-ITKD  129 (307)
Q Consensus        52 ~~V~~~G~FD~lH~GH~~lL~qAk~~gd~LiVgV~sD~~i~~~Kg~pi~s~eER~~ll~~-~k~VD~Vv~~~py~-~t~d  129 (307)
                      +++++.|+|||+|.||+.++++|++.+|+++++++.+|    .| +++++.+||++|++. ++++|.+.+ .+|+ ++.+
T Consensus         2 ~i~i~~GsFDpvH~GH~~l~~~a~~~~d~v~v~~~~~p----~k-~~~~~~~~R~~ml~~a~~~~~~v~v-~~~~~~~~~   75 (158)
T 1qjc_A            2 KRAIYPGTFDPITNGHIDIVTRATQMFDHVILAIAASP----SK-KPMFTLEERVALAQQATAHLGNVEV-VGFSDLMAN   75 (158)
T ss_dssp             CEEEEEECCTTCCHHHHHHHHHHHTTSSEEEEEEESCC----SS-CCSSCHHHHHHHHHHHTTTCTTEEE-EEECSCHHH
T ss_pred             CEEEEEecCCCCCHHHHHHHHHHHHhCCEEEEEECCCC----CC-CCCCCHHHHHHHHHHHHhcCCCeEE-cccchHHHH
Confidence            36899999999999999999999999999999888875    34 478999999999996 779998877 4553 2333


Q ss_pred             HHHHHHHhcCccEEEEcCCCCcCCCCCchHHHH-HhC---C-EEEEcCCC--CCCCHHHHHHHHHhh
Q 021802          130 FMKKLFDEYNIDYIIHGDDPCVLPDGTDAYELA-KKA---G-RYKQIKRT--EGVSSTDIVGRMLLC  189 (307)
Q Consensus       130 fle~ll~~l~~d~VV~GdD~~fg~~g~d~y~~l-k~~---g-~v~vv~rt--~~VSST~Ir~rIl~~  189 (307)
                          .+++++++++++|.|..++.......... +..   . .+..++..  ..||||.||+++...
T Consensus        76 ----~l~~l~~~~~v~G~d~~~~~~~~~~~~~~~r~~~~~~~~i~~~~~~~~~~iSST~IR~~i~~g  138 (158)
T 1qjc_A           76 ----FARNQHATVLIRGLRAVADFEYEMQLAHMNRHLMPELESVFLMPSKEWSFISSSLVKEVARHQ  138 (158)
T ss_dssp             ----HHHHTTCCEEEEECCTTCCHHHHHHHHHHHHHHCTTSEEEEECCCGGGTTCCHHHHHHHHHTT
T ss_pred             ----HHHHcCCCEEEEeccchhhhHHHHHHHHhCccCCCCCCEEEEECCCCCCccCHHHHHHHHHcC
Confidence                34668999999999977643221111111 221   1 33344333  469999999999755

>1o6b_A Phosphopantetheine adenylyltransferase; structural genomics; HET: ADP; 2.20A {Bacillus subtilis} SCOP: c.26.1.3

Probab=99.74  E-value=6.2e-18  Score=145.31  Aligned_cols=129  Identities=15%  Similarity=0.135  Sum_probs=93.7

Q ss_pred             eEEEEecccCcCCHHHHHHHHHHHHcCCeEEEEEeCChhhhhcCCCCCCCHHHHHHHHHH-ccCccEEEEcCCCcccHHH
Q 021802           52 VRVYMDGCFDMMHYGHCNALRQARALGDQLVVGVVSDAEIIANKGPPVTPLHERMIMVNA-VKWVDEVISDAPYAITKDF  130 (307)
Q Consensus        52 ~~V~~~G~FD~lH~GH~~lL~qAk~~gd~LiVgV~sD~~i~~~Kg~pi~s~eER~~ll~~-~k~VD~Vv~~~py~~t~df  130 (307)
                      ++++++|+|||+|.||+.++++|++.+|+++|.+..+|    .| ++++|.+||++|++. ++++|.+.+ .+|+   +|
T Consensus         3 ~i~i~~GsFDpvH~GH~~li~~a~~~~d~v~v~~~~~p----~k-~~l~~~~~R~~ml~~a~~~~~~v~v-~~~e---~~   73 (169)
T 1o6b_A            3 SIAVCPGSFDPVTYGHLDIIKRGAHIFEQVYVCVLNNS----SK-KPLFSVEERCELLREVTKDIPNITV-ETSQ---GL   73 (169)
T ss_dssp             CEEEEEECCTTCCHHHHHHHHHHHHHSSEEEEEECCCC----SS-CCSSCHHHHHHHHHHHHTTCTTEEE-EECS---SC
T ss_pred             cEEEEEEeeCCCCHHHHHHHHHHHHhCCEEEEEECCCC----cc-CCCCCHHHHHHHHHHHHhcCCCEEE-cccc---hH
Confidence            36899999999999999999999999999888777554    34 578999999999996 578998877 5654   23


Q ss_pred             HHHHHHhcCccEEEEcCCCCcCCCCCchHHHHHh----CCEEEE-cCC--CCCCCHHHHHHHHHhh
Q 021802          131 MKKLFDEYNIDYIIHGDDPCVLPDGTDAYELAKK----AGRYKQ-IKR--TEGVSSTDIVGRMLLC  189 (307)
Q Consensus       131 le~ll~~l~~d~VV~GdD~~fg~~g~d~y~~lk~----~g~v~v-v~r--t~~VSST~Ir~rIl~~  189 (307)
                      ..+.+++++++++++|.|+.++.+.........+    ...... ++.  ...||||.||+++...
T Consensus        74 ~~~~l~~l~~~~~i~G~d~~~~~~~~~~~~~~~r~~~~~~~~i~~~~~~~~~~ISST~IR~~l~~G  139 (169)
T 1o6b_A           74 LIDYARRKNAKAILRGLRAVSDFEYEMQGTSVNRVLDESIETFFMMANNQYSFLSSSIVKEVARYD  139 (169)
T ss_dssp             HHHHHHHTTCSEEEEEECSGGGHHHHHHHHHHHHHHCTTSEEEEEECCSTTTTCCHHHHHHHHHTT
T ss_pred             HHHHHHHcCCCEEEEcCccccchHHHHHHHHHhccccCCCCEEEEECCCCCCcCcHHHHHHHHHcC
Confidence            3333467889999999998876432221211121    223333 332  2369999999999865

>3nv7_A Phosphopantetheine adenylyltransferase; helicobacter pylori 26695 strain, mutant I4V/N76Y, phosphopa adenylyltransferase; 1.75A {Helicobacter pylori} PDB: 3otw_A*

Probab=99.72  E-value=1.5e-18  Score=149.58  Aligned_cols=125  Identities=20%  Similarity=0.206  Sum_probs=92.1

Q ss_pred             eEEEEecccCcCCHHHHHHHHHHHHcCCeEEEEEeCChhhhhcCCCCCCCHHHHHHHHHH-ccCccEEEEcCCCc-ccHH
Q 021802           52 VRVYMDGCFDMMHYGHCNALRQARALGDQLVVGVVSDAEIIANKGPPVTPLHERMIMVNA-VKWVDEVISDAPYA-ITKD  129 (307)
Q Consensus        52 ~~V~~~G~FD~lH~GH~~lL~qAk~~gd~LiVgV~sD~~i~~~Kg~pi~s~eER~~ll~~-~k~VD~Vv~~~py~-~t~d  129 (307)
                      +++++.|+||++|.||+.++++|++++|+|+|++.+++    .| +|+++.+||+++++. ++++|.+.+ .+|+ .+.+
T Consensus         3 ~i~i~~GsFDPiH~GHl~ii~~A~~~~D~viv~v~~~~----~K-~~~~~~~eR~~ml~~a~~~~~~v~v-~~~~~l~~~   76 (157)
T 3nv7_A            3 KVGIYPGTFDPVTNGHIDIIHRSSELFEKLIVAVAHSS----AK-NPMFSLDERLKMIQLATKSFKNVEC-VAFEGLLAY   76 (157)
T ss_dssp             CEEEEEECCTTCCHHHHHHHHHHHTTSSEEEEEEECCG----GG-CCSSCHHHHHHHHHHHHTTSTTEEE-EEECSCHHH
T ss_pred             EEEEEEEEcCCCCHHHHHHHHHHHHhCCceEEEEccCC----CC-CCCCCHHHHHHHHHHHhcCCCcEEE-EecCchHHH
Confidence            46999999999999999999999999999999998886    34 589999999999998 778898866 4553 3345


Q ss_pred             HHHHHHHhcCccEEEEc----CCCCcCCCCCchHHHHHhC---CEEEEcCCCC---CCCHHHHHHHHHhh
Q 021802          130 FMKKLFDEYNIDYIIHG----DDPCVLPDGTDAYELAKKA---GRYKQIKRTE---GVSSTDIVGRMLLC  189 (307)
Q Consensus       130 fle~ll~~l~~d~VV~G----dD~~fg~~g~d~y~~lk~~---g~v~vv~rt~---~VSST~Ir~rIl~~  189 (307)
                      ++    ++++++++|.|    .||.+..   +....-+..   .+...+.+++   .+|||.||+.+...
T Consensus        77 ~~----~~~~~~~ivrG~r~~~D~~ye~---~~a~~n~~l~~~ietv~l~~~~~~~~iSSt~vRe~~~~g  139 (157)
T 3nv7_A           77 LA----KEYHCKVLVRGLRVVSDFEYEL---QMGYANKSLNHELETLYFMPTLQNAFISSSIVRSIIAHK  139 (157)
T ss_dssp             HH----HHTTCCCBCCCCSCCCCHHHHH---HHHHHHHHSSCCCCCCCCCCCHHHHTCCHHHHHHHHHTT
T ss_pred             HH----HHcCCCEEEECCcccchhhhhH---HHHHHHHHhCCCceEEEEcCCcccceeeHHHHHHHHHcC
Confidence            54    56899999999    5544210   100011122   2333344543   79999999988644

>2qtr_A Nicotinate (nicotinamide) nucleotide adenylyltran; NAD, nucleotidyltransferase, pyridine nucleotide biosynthesi transferase; HET: NXX; 1.70A {Bacillus anthracis} PDB: 3dv2_A 3mla_A* 3hfj_A* 3mlb_A* 3mmx_A* 3e27_A* 2qtn_A* 2qtm_A*

Probab=99.72  E-value=1.9e-17  Score=144.12  Aligned_cols=133  Identities=20%  Similarity=0.113  Sum_probs=100.2

Q ss_pred             eEEEEecccCcCCHHHHHHHHHHHHcC--CeEEEEEeCChhhhhcCC-CCCCCHHHHHHHHHH-ccCccEEEEcCCCc--
Q 021802           52 VRVYMDGCFDMMHYGHCNALRQARALG--DQLVVGVVSDAEIIANKG-PPVTPLHERMIMVNA-VKWVDEVISDAPYA--  125 (307)
Q Consensus        52 ~~V~~~G~FD~lH~GH~~lL~qAk~~g--d~LiVgV~sD~~i~~~Kg-~pi~s~eER~~ll~~-~k~VD~Vv~~~py~--  125 (307)
                      +++++.|+|||+|.||+.++++|++.+  |++++.+++++.   .|. +++++.+||++|++. ++++|.+.+ .+|+  
T Consensus         3 ~i~i~~GsFDPvH~GH~~li~~a~~~~~~d~v~~~~~~~~~---~k~~~~~~~~~~R~~ml~~~~~~~~~v~v-~~~e~~   78 (189)
T 2qtr_A            3 KIGIIGGTFDPPHYGHLLIANEVYHALNLEEVWFLPNQIPP---HKQGRNITSVESRLQMLELATEAEEHFSI-CLEELS   78 (189)
T ss_dssp             EEEEEEECCSSCCHHHHC-CHHHHHHTTCSEEEEEECSSCT---TCTTSCCCCHHHHHHHHHHHHTTCTTEEE-CCTGGG
T ss_pred             eEEEEecCcccccHHHHHHHHHHHHHcCCCEEEEEECCCCC---CccCCCCCCHHHHHHHHHHHhCCCCCEEE-ehHHhc
Confidence            468999999999999999999999998  899999987763   343 579999999999996 789998888 6664  


Q ss_pred             -----ccHHHHHHHHHhcCcc---EEEEcCCCCcCCCCCchHHHHHhCCEEEEcCCC-----------------CCCCHH
Q 021802          126 -----ITKDFMKKLFDEYNID---YIIHGDDPCVLPDGTDAYELAKKAGRYKQIKRT-----------------EGVSST  180 (307)
Q Consensus       126 -----~t~dfle~ll~~l~~d---~VV~GdD~~fg~~g~d~y~~lk~~g~v~vv~rt-----------------~~VSST  180 (307)
                           ++.++++.+-.++ ++   ++|+|.|+.++..+-..++.+.+.+.+.+++|.                 ..||||
T Consensus        79 ~~~~~~~~~~l~~l~~~~-p~~~~~~v~G~D~~~~~~~w~~~~~l~~~~~~~v~~r~~~~~~~~~~v~~~~~~~~~iSST  157 (189)
T 2qtr_A           79 RKGPSYTYDTMLQLTKKY-PDVQFHFIIGGDMVEYLPKWYNIEALLDLVTFVGVARPGYKLRTPYPITTVEIPEFAVSSS  157 (189)
T ss_dssp             SCSCCCHHHHHHHHHHHC-TTCEEEEEEEHHHHHHGGGSTTHHHHTTTCEEEEECCTTCCCCCSSCCEEECCCCCCCCHH
T ss_pred             CCCCCCHHHHHHHHHHHC-CCCCEEEEEehhhhhhhhccCCHHHHHHhCCEEEEECCCCCccCCceEEEEcCCCCccCHH
Confidence                 3445554443333 33   399999988765544456667666666666542                 369999


Q ss_pred             HHHHHHHhh
Q 021802          181 DIVGRMLLC  189 (307)
Q Consensus       181 ~Ir~rIl~~  189 (307)
                      .||+++...
T Consensus       158 ~IR~~l~~g  166 (189)
T 2qtr_A          158 LLRERYKEK  166 (189)
T ss_dssp             HHHHHHHTT
T ss_pred             HHHHHHHcC
Confidence            999999754

>4f3r_A Phosphopantetheine adenylyltransferase; phosphopantetheine adenylyltranferase; 2.25A {Coxiella burnetii}

Probab=99.70  E-value=2e-17  Score=143.05  Aligned_cols=128  Identities=20%  Similarity=0.184  Sum_probs=86.6

Q ss_pred             eEEEEecccCcCCHHHHHHHHHHHHcCCeEEEEEeCChhhhhcCCCCCCCHHHHHHHHHHccCccEEEEcCCCc-ccHHH
Q 021802           52 VRVYMDGCFDMMHYGHCNALRQARALGDQLVVGVVSDAEIIANKGPPVTPLHERMIMVNAVKWVDEVISDAPYA-ITKDF  130 (307)
Q Consensus        52 ~~V~~~G~FD~lH~GH~~lL~qAk~~gd~LiVgV~sD~~i~~~Kg~pi~s~eER~~ll~~~k~VD~Vv~~~py~-~t~df  130 (307)
                      +++++.|+||++|.||+.++++|++++|+++|++..++    .| +|+++.+||+++++.+...|.+.+ .+|+ .+.++
T Consensus         6 ~i~i~~GsFDPiH~GHl~li~~A~~~~d~viv~v~~~~----~K-~~~~~~~~R~~m~~~~~~~~~v~V-~~~~~l~~~~   79 (162)
T 4f3r_A            6 PIAIYPGTFDPLTNGHVDIIERALPLFNKIIVACAPTS----RK-DPHLKLEERVNLIADVLTDERVEV-LPLTGLLVDF   79 (162)
T ss_dssp             CEEEEEECCTTCCHHHHHHHHHHGGGCSEEEEEECCC-----------CCHHHHHHHHHHHCCCTTEEE-EECCSCHHHH
T ss_pred             EEEEEEEEcCCCCHHHHHHHHHHHHHCCcEEEEEecCC----cc-CCCCCHHHHHHHHHHhhCCCCEEE-EeccchHHHH
Confidence            46999999999999999999999999999999999876    34 689999999999998544477755 3443 34555


Q ss_pred             HHHHHHhcCccEEEEcC----CCCcCCCCCchHHHHHhCCEEEEcCCC---CCCCHHHHHHHHHhh
Q 021802          131 MKKLFDEYNIDYIIHGD----DPCVLPDGTDAYELAKKAGRYKQIKRT---EGVSSTDIVGRMLLC  189 (307)
Q Consensus       131 le~ll~~l~~d~VV~Gd----D~~fg~~g~d~y~~lk~~g~v~vv~rt---~~VSST~Ir~rIl~~  189 (307)
                      +    ++++++++|.|-    ||....+-....+.+....+...+.+.   ..||||.||+++...
T Consensus        80 ~----~~~~~~~~v~G~r~~~Df~~e~~~a~~nr~l~~~ietv~l~~~~~~~~ISST~IRe~~~~g  141 (162)
T 4f3r_A           80 A----KTHQANFILRGLRAVSDFDYEFQLAHMNYQLSPEIETIFLPAREGYSYVSGTMVREIVTLG  141 (162)
T ss_dssp             H----HHTTCCEEEEEECSHHHHHHHHHHHHHHHHHCTTCEEEEEECCGGGSSCCHHHHHHHHHTT
T ss_pred             H----HHcCCCEEEECCCchhhhhhHHHHHHHHHHhCCCccEEEEECCcccccccHHHHHHHHHcC
Confidence            5    568999999994    432100000000011112344444444   379999999998754

>1kam_A Deamido-NAD(+), nicotinate-nucleotide adenylyltransferase; rossman fold; 2.10A {Bacillus subtilis} SCOP: c.26.1.3 PDB: 1kaq_A*

Probab=99.69  E-value=5.8e-16  Score=136.08  Aligned_cols=132  Identities=20%  Similarity=0.117  Sum_probs=93.7

Q ss_pred             eEEEEecccCcCCHHHHHHHHHHHHcC--CeEEEEEeCChhhhhcCC-CCCCCHHHHHHHHHH-ccCccEEEEcCCCc--
Q 021802           52 VRVYMDGCFDMMHYGHCNALRQARALG--DQLVVGVVSDAEIIANKG-PPVTPLHERMIMVNA-VKWVDEVISDAPYA--  125 (307)
Q Consensus        52 ~~V~~~G~FD~lH~GH~~lL~qAk~~g--d~LiVgV~sD~~i~~~Kg-~pi~s~eER~~ll~~-~k~VD~Vv~~~py~--  125 (307)
                      +++++.|+|||+|.||+.++++|++.+  |++++.+++++.   .|. +++++.+||++|++. ++++|.+.+ .+|.  
T Consensus         8 ~~~v~~GsFdp~H~GH~~l~~~a~~~~~~d~v~~~~~~~~~---~k~~~~~~~~~~R~~ml~~a~~~~~~v~v-~~~e~~   83 (194)
T 1kam_A            8 KIGIFGGTFDPPHNGHLLMANEVLYQAGLDEIWFMPNQIPP---HKQNEDYTDSFHRVEMLKLAIQSNPSFKL-ELVEME   83 (194)
T ss_dssp             EEEEEEECCSSCCHHHHHHHHHHHHHTTCSEEEEEECCCC------------CHHHHHHHHHHHHTTCTTEEE-CCGGGS
T ss_pred             EEEEEEeccccccHHHHHHHHHHHHHhCCCEEEEEECCCCC---CcCCcCCCCHHHHHHHHHHHHcCCCCeEE-eHHHhc
Confidence            468999999999999999999999998  889888887652   343 578999999999995 889998877 5553  


Q ss_pred             -----ccHHHHHHHHHhcCcc---EEEEcCCCCcC-CCCCchHHHHHhCCEEEEcCCC-----------------CCCCH
Q 021802          126 -----ITKDFMKKLFDEYNID---YIIHGDDPCVL-PDGTDAYELAKKAGRYKQIKRT-----------------EGVSS  179 (307)
Q Consensus       126 -----~t~dfle~ll~~l~~d---~VV~GdD~~fg-~~g~d~y~~lk~~g~v~vv~rt-----------------~~VSS  179 (307)
                           ++.++++.+..++ ++   ++|+|.|..++ ..|. .|+.+.+...+.+++|.                 ..|||
T Consensus        84 ~~~~~~t~~~l~~l~~~~-p~~~~~~v~G~D~~~~~~~W~-~~e~i~~~~~~~v~~R~g~~~~l~~~i~~~~~~~~~ISS  161 (194)
T 1kam_A           84 REGPSYTFDTVSLLKQRY-PNDQLFFIIGADMIEYLPKWY-KLDELLNLIQFIGVKRPGFHVETPYPLLFADVPEFEVSS  161 (194)
T ss_dssp             TTCCCSHHHHHHHHHHHS-TTSEEEEEEETTTTTTCCCCH-HHHHHHHHSEEEEEECSSCCCCCSSCCEEEECCCBCCCH
T ss_pred             CCCCCChHHHHHHHHHHC-CCCcEEEEEecchhhhhcccc-CHHHHHHhCcEEEEECCCcchhcCCCEEEeCCCCCCcCH
Confidence                 4556666654455 44   99999998765 3344 34433334445544442                 26999


Q ss_pred             HHHHHHHHhh
Q 021802          180 TDIVGRMLLC  189 (307)
Q Consensus       180 T~Ir~rIl~~  189 (307)
                      |.||+++...
T Consensus       162 T~IR~~i~~g  171 (194)
T 1kam_A          162 TMIRERFKSK  171 (194)
T ss_dssp             HHHHHHHHHT
T ss_pred             HHHHHHHHcC
Confidence            9999999755

>1od6_A PPAT, phosphopantetheine adenylyltransferase; coenzyme A biosynthesis, nucleotidyltransferase; HET: PNS; 1.5A {Thermus thermophilus} SCOP: c.26.1.3

Probab=99.67  E-value=5.7e-16  Score=131.39  Aligned_cols=122  Identities=20%  Similarity=0.281  Sum_probs=87.8

Q ss_pred             EEEecccCcCCHHHHHHHHHHHHcCCeEEEEEeCChhhhhcCC-CCCCCHHHHHHHHHH-ccCccEEEEcCCCcccHHHH
Q 021802           54 VYMDGCFDMMHYGHCNALRQARALGDQLVVGVVSDAEIIANKG-PPVTPLHERMIMVNA-VKWVDEVISDAPYAITKDFM  131 (307)
Q Consensus        54 V~~~G~FD~lH~GH~~lL~qAk~~gd~LiVgV~sD~~i~~~Kg-~pi~s~eER~~ll~~-~k~VD~Vv~~~py~~t~dfl  131 (307)
                      +++.|+|||+|.||+.++++|++.+|+++++++.++    .|. +++++.++|++|++. ++++|.+.+ .+|+   +|.
T Consensus         3 ~v~~GsFdp~H~GH~~l~~~a~~~~d~v~v~~~~~p----~k~~~~~~~~~~R~~ml~~a~~~~~~v~v-~~~e---~~~   74 (160)
T 1od6_A            3 VVYPGSFDPLTNGHLDVIQRASRLFEKVTVAVLENP----SKRGQYLFSAEERLAIIREATAHLANVEA-ATFS---GLL   74 (160)
T ss_dssp             EEEEECCTTCCHHHHHHHHHHHHHSSEEEEEEECC---------CCSSCHHHHHHHHHHHTTTCTTEEE-EEEC---SCH
T ss_pred             EEEEeeeCCCCHHHHHHHHHHHHHCCEEEEEEcCCC----CCCCCCCCCHHHHHHHHHHHhcCCCCEEE-EecC---chH
Confidence            899999999999999999999999999988888665    243 478999999999996 678898877 5554   133


Q ss_pred             HHHHHhcCccEEEEcCCCCcCCCCCchHHHHH-------hC---C-EEEEcCCC--CCCCHHHHHHHHHhh
Q 021802          132 KKLFDEYNIDYIIHGDDPCVLPDGTDAYELAK-------KA---G-RYKQIKRT--EGVSSTDIVGRMLLC  189 (307)
Q Consensus       132 e~ll~~l~~d~VV~GdD~~fg~~g~d~y~~lk-------~~---g-~v~vv~rt--~~VSST~Ir~rIl~~  189 (307)
                      .+.+++++++++++|.|..     .+ ++.++       ..   . .+..++..  ..||||.||+++...
T Consensus        75 ~~~l~~l~~~~~v~G~d~~-----~~-~~~~~~~~~~~r~~~~~~~~i~~~~~~~~~~ISST~IR~~l~~G  139 (160)
T 1od6_A           75 VDFVRRVGAQAIVKGLRAV-----SD-YEYELQMAHLNRQLYPGLETLFILAATRYSFVSSTMVKEIARYG  139 (160)
T ss_dssp             HHHHHHTTCSEEEEEECTT-----SC-HHHHHHHHHHHHHHTTTCEEEEEECCGGGTTCCHHHHHHHHHTT
T ss_pred             HHHHHHcCCCEEEEeCCcc-----cc-hHHHHHHHHhCcCCCCCCCEEEEeCCCCCCcccHHHHHHHHHcC
Confidence            3345678999999998732     21 11111       11   1 23334322  479999999999765

>3f3m_A Phosphopantetheine adenylyltransferase; PPAT, coenzyme A BIO pathway, coenzyme A biosynthesis, nucleotidyltransferase; HET: PPS; 2.40A {Staphylococcus aureus} SCOP: c.26.1.0

Probab=99.65  E-value=2.9e-16  Score=136.63  Aligned_cols=124  Identities=23%  Similarity=0.287  Sum_probs=87.0

Q ss_pred             eEEEEecccCcCCHHHHHHHHHHHHcCCeEEEEEeCChhhhhcCCCCCCCHHHHHHHHHH-ccCccEEEEcCCCc-ccHH
Q 021802           52 VRVYMDGCFDMMHYGHCNALRQARALGDQLVVGVVSDAEIIANKGPPVTPLHERMIMVNA-VKWVDEVISDAPYA-ITKD  129 (307)
Q Consensus        52 ~~V~~~G~FD~lH~GH~~lL~qAk~~gd~LiVgV~sD~~i~~~Kg~pi~s~eER~~ll~~-~k~VD~Vv~~~py~-~t~d  129 (307)
                      +++++.|+||++|.||+.++++|++.+|+++|++..++    .| +++++.+||++|++. +++.+.+.+ .+|. ++.+
T Consensus         4 ki~i~~GsFDPiH~GHl~i~~~a~~~~d~viv~v~~~p----~K-~~~~~~~~R~~ml~~a~~~~~~v~v-~~~e~~tvd   77 (168)
T 3f3m_A            4 TIAVIPGSFDPITYGHLDIIERSTDRFDEIHVCVLKNS----KK-EGTFSLEERMDLIEQSVKHLPNVKV-HQFSGLLVD   77 (168)
T ss_dssp             CEEEEEECCTTCCHHHHHHHHHHGGGSSEEEEEECC----------CCSCHHHHHHHHHHHTTTCTTEEE-EECCSCHHH
T ss_pred             eEEEEEEEcCcCCHHHHHHHHHHHHhCCEEEEEEcCCC----CC-CCCCCHHHHHHhHHHHhcCCCCEEE-EEcCCCHHH
Confidence            46999999999999999999999999999999998765    34 589999999999997 567787765 4443 4556


Q ss_pred             HHHHHHHhcCccEEEEcCCCCcCCCCCchHHH--H---Hh---CC-EEEEcCC--CCCCCHHHHHHHHHhh
Q 021802          130 FMKKLFDEYNIDYIIHGDDPCVLPDGTDAYEL--A---KK---AG-RYKQIKR--TEGVSSTDIVGRMLLC  189 (307)
Q Consensus       130 fle~ll~~l~~d~VV~GdD~~fg~~g~d~y~~--l---k~---~g-~v~vv~r--t~~VSST~Ir~rIl~~  189 (307)
                      ++    +++++++++.|-|-..+  +  .|+.  .   +.   .. .+...+.  ...||||.||+++...
T Consensus        78 ~~----~~l~~~~~I~G~d~~~d--~--~~e~~~a~~~r~l~~~~e~v~l~~~p~~~~ISST~IRe~~~~g  140 (168)
T 3f3m_A           78 YC----EQVGAKTIIRGLRAVSD--F--EYELRLTSMNKKLNNEIETLYMMSSTNYSFISSSIVKEVAAYR  140 (168)
T ss_dssp             HH----HHHTCCEEEEEECTTCC--H--HHHHHHHHHHHHHCTTSEEEEEECCTTTTTCCHHHHHHHHHTT
T ss_pred             HH----HHcCCCEEEEcCCchhh--h--hHHHHHhHHhHhhCCCCcEEEEeCCcccccccHHHHHHHHHcC
Confidence            65    45789999999653322  1  1211  0   11   12 2333322  2349999999998754

>1k4m_A NAMN adenylyltransferase; nucleotidyltransferase; HET: NAD CIT; 1.90A {Escherichia coli} SCOP: c.26.1.3 PDB: 1k4k_A*

Probab=99.63  E-value=9.7e-16  Score=136.64  Aligned_cols=92  Identities=21%  Similarity=0.236  Sum_probs=77.0

Q ss_pred             EEEecccCcCCHHHHHHHHHHHHcC--CeEEEEEeCChhhhhcCCCCCCCHHHHHHHHH-HccCccEEEEcCCCc-----
Q 021802           54 VYMDGCFDMMHYGHCNALRQARALG--DQLVVGVVSDAEIIANKGPPVTPLHERMIMVN-AVKWVDEVISDAPYA-----  125 (307)
Q Consensus        54 V~~~G~FD~lH~GH~~lL~qAk~~g--d~LiVgV~sD~~i~~~Kg~pi~s~eER~~ll~-~~k~VD~Vv~~~py~-----  125 (307)
                      +++.|+|||+|.||+.++++|++.+  |++++.+++++.   .|..++++.+||++|++ +++++|.+.+ .+|+     
T Consensus         6 ~i~~GsFdPiH~GH~~l~~~a~~~~~~d~v~~~~~~~~~---~k~~~~~~~~~R~~ml~~a~~~~~~v~v-~~~e~~~~~   81 (213)
T 1k4m_A            6 ALFGGTFDPVHYGHLKPVETLANLIGLTRVTIIPNNVPP---HRPQPEANSVQRKHMLELAIADKPLFTL-DERELKRNA   81 (213)
T ss_dssp             EEEEECCTTCCHHHHHHHHHHHHHHTCSCEEEEECSSCT---TSCCCSSCHHHHHHHHHHHHTTCTTEEE-CCHHHHCSS
T ss_pred             EEEEeCcCCCCHHHHHHHHHHHHHcCCCEEEEEECCCCC---CCCCCCCCHHHHHHHHHHHhccCCCEEE-eHHHhcCCC
Confidence            8999999999999999999999987  889888887752   34346899999999999 5789998887 5553     


Q ss_pred             --ccHHHHHHHHHhcCcc---EEEEcCCC
Q 021802          126 --ITKDFMKKLFDEYNID---YIIHGDDP  149 (307)
Q Consensus       126 --~t~dfle~ll~~l~~d---~VV~GdD~  149 (307)
                        .+.+|++.+.++++++   ++++|.|.
T Consensus        82 ~s~t~~~l~~l~~~~~~~~~~~~i~G~D~  110 (213)
T 1k4m_A           82 PSYTAQTLKEWRQEQGPDVPLAFIIGQDS  110 (213)
T ss_dssp             CCCHHHHHHHHHHHHCTTSCEEEEEEHHH
T ss_pred             CCcHHHHHHHHHHHhCCCCcEEEEEehhh
Confidence              4578988876777899   99999975

>3nbk_A Phosphopantetheine adenylyltransferase; PPAT, PHP; HET: PNS; 1.58A {Mycobacterium tuberculosis} PDB: 3nba_A* 3pnb_A* 4e1a_A 3lcj_A 3rba_A* 1tfu_A* 3rff_A 3rhs_A* 3uc5_A*

Probab=99.62  E-value=1.1e-15  Score=134.04  Aligned_cols=131  Identities=18%  Similarity=0.163  Sum_probs=92.5

Q ss_pred             CCCCeEEEEecccCcCCHHHHHHHHHHHHcCCeEEEEEeCChhhhhcCCCCCCCHHHHHHHHHH-ccCccEEEEcCCCc-
Q 021802           48 KKKPVRVYMDGCFDMMHYGHCNALRQARALGDQLVVGVVSDAEIIANKGPPVTPLHERMIMVNA-VKWVDEVISDAPYA-  125 (307)
Q Consensus        48 ~~~~~~V~~~G~FD~lH~GH~~lL~qAk~~gd~LiVgV~sD~~i~~~Kg~pi~s~eER~~ll~~-~k~VD~Vv~~~py~-  125 (307)
                      ..+.+++++.|+||++|.||+.++++|++++|+|+|++..++    .| +++++.+||++|++. ++..+.+.+ .+|+ 
T Consensus        18 ~~~mki~i~~GsFDPiH~GHl~ii~~A~~~~D~Viv~v~~np----~K-~~~~s~eeR~~mv~~a~~~~~~v~V-~~~e~   91 (177)
T 3nbk_A           18 GSHMTGAVCPGSFDPVTLGHVDIFERAAAQFDEVVVAILVNP----AK-TGMFDLDERIAMVKESTTHLPNLRV-QVGHG   91 (177)
T ss_dssp             --CCCEEEEEECCTTCCHHHHHHHHHHHHHSSEEEEEECCCT----TS-CCSSCHHHHHHHHHHHCTTCTTEEE-EECCS
T ss_pred             CCCCEEEEEEEeeCCCCHHHHHHHHHHHHHCCEEEEEEcCCC----CC-CCCCCHHHHHHHHHHHhCCCCCEEE-EecCc
Confidence            445567999999999999999999999999999999998775    45 489999999999997 777787766 3443 


Q ss_pred             ccHHHHHHHHHhcCccEEEEcCCCCcCCCCC-c---hHHHHHhCCEEEEcCC---CCCCCHHHHHHHHHhh
Q 021802          126 ITKDFMKKLFDEYNIDYIIHGDDPCVLPDGT-D---AYELAKKAGRYKQIKR---TEGVSSTDIVGRMLLC  189 (307)
Q Consensus       126 ~t~dfle~ll~~l~~d~VV~GdD~~fg~~g~-d---~y~~lk~~g~v~vv~r---t~~VSST~Ir~rIl~~  189 (307)
                      .+.+|+    +++++++++.|-+...+-+.+ +   ..+.+ ...+...+..   ...||||.||+++...
T Consensus        92 l~vd~~----~~~~a~~ivrGlr~~~Dfeye~~~a~~nr~l-~~ietvfl~~~~~~~~ISST~IRe~~~~g  157 (177)
T 3nbk_A           92 LVVDFV----RSCGMTAIVKGLRTGTDFEYELQMAQMNKHI-AGVDTFFVATAPRYSFVSSSLAKEVAMLG  157 (177)
T ss_dssp             CHHHHH----HHTTCCEEEEEECTTCCHHHHHHHHHHHHHH-HCCEEEEEECCGGGSSCCHHHHHHHHHTT
T ss_pred             hHHHHH----HHcCCCEEEECCCchhHHHHHHHHHHHHHhc-CCCceEEEeCCCcccccchHHHHHHHHcC
Confidence            456666    458999999994432110000 0   00112 3334333332   3479999999987643

>3nd5_A Phosphopantetheine adenylyltransferase; PPAT, coenzyme A BIO pathway; 2.30A {Enterococcus faecalis} SCOP: c.26.1.0 PDB: 3nd6_A* 3nd7_A*

Probab=99.60  E-value=9.8e-16  Score=133.60  Aligned_cols=125  Identities=18%  Similarity=0.208  Sum_probs=85.6

Q ss_pred             eEEEEecccCcCCHHHHHHHHHHHHcCCeEEEEEeCChhhhhcCCCCCCCHHHHHHHHHH-ccCccEEEEcCCC-cccHH
Q 021802           52 VRVYMDGCFDMMHYGHCNALRQARALGDQLVVGVVSDAEIIANKGPPVTPLHERMIMVNA-VKWVDEVISDAPY-AITKD  129 (307)
Q Consensus        52 ~~V~~~G~FD~lH~GH~~lL~qAk~~gd~LiVgV~sD~~i~~~Kg~pi~s~eER~~ll~~-~k~VD~Vv~~~py-~~t~d  129 (307)
                      +++++.|+||++|.||+.++++|++.+|+|+|++..++    .| +|+++.+||++|++. ++.++.+.+..+| ..+.+
T Consensus         3 ~i~i~~GsFDPiH~GHl~i~~~a~~~~D~viv~v~~~~----~K-~~~~~~~~R~~ml~~a~~~~~~v~v~~~~e~~tvd   77 (171)
T 3nd5_A            3 KIALFPGSFDPMTNGHLNLIERSAKLFDEVIIGVFINT----SK-QTLFTPEEKKYLIEEATKEMPNVRVIMQETQLTVE   77 (171)
T ss_dssp             CEEEEEECCTTCCHHHHHHHHHHHTTCSEEEEEEEC-----------CCCHHHHHHHHHHHHTTCTTEEEEEECSSCHHH
T ss_pred             eEEEEEEEccccCHHHHHHHHHHHHHCCCeEEEEecCC----CC-CCCCCHHHHHHHHHHHHccCCCEEEeeCCCCcHHH
Confidence            46899999999999999999999999999999997765    34 489999999999996 6888887541123 34566


Q ss_pred             HHHHHHHhcCccEEEEcCCCCcCCCCCchHHH----H-Hh---CC-EEEEcCC--CCCCCHHHHHHHHHhh
Q 021802          130 FMKKLFDEYNIDYIIHGDDPCVLPDGTDAYEL----A-KK---AG-RYKQIKR--TEGVSSTDIVGRMLLC  189 (307)
Q Consensus       130 fle~ll~~l~~d~VV~GdD~~fg~~g~d~y~~----l-k~---~g-~v~vv~r--t~~VSST~Ir~rIl~~  189 (307)
                      ++    +++++++++.|.|-..+  .+  |+.    + +.   .. .+...+.  ...||||.||+++...
T Consensus        78 ~~----~~l~~~~~i~G~~~~~d--~~--~e~~la~~nr~l~~~~etv~l~~~~~~~~ISST~IRe~~~~g  140 (171)
T 3nd5_A           78 SA----KSLGANFLIRGIRNVKD--YE--YEKDIAKMNQHLAPEIETVFLLAEEPYAHVSSSLLKEVLRFG  140 (171)
T ss_dssp             HH----HHHTCCEEEEEECSHHH--HH--HHHHHHHHHHHHCTTSEEEEEECCGGGTTCCHHHHHHHHHTT
T ss_pred             HH----HHCCCCEEEECCCchhh--hH--HHHHHHHHhhhhcCCccEEEEeCCccccccchHHHHHHHHcC
Confidence            66    45689999999553211  11  111    0 11   12 3333332  2479999999998754

>1vlh_A Phosphopantetheine adenylyltransferase; TM0741, structural G JCSG, protein structure initiative, PSI, joint center for S genomics; HET: PNS; 2.20A {Thermotoga maritima} SCOP: c.26.1.3

Probab=99.59  E-value=3.1e-15  Score=130.02  Aligned_cols=123  Identities=23%  Similarity=0.235  Sum_probs=88.2

Q ss_pred             eEEEEecccCcCCHHHHHHHHHHHHcCCeEEEEEeCChhhhhcCCCCCCCHHHHHHHHH-HccCccEEEEcCCCc-ccHH
Q 021802           52 VRVYMDGCFDMMHYGHCNALRQARALGDQLVVGVVSDAEIIANKGPPVTPLHERMIMVN-AVKWVDEVISDAPYA-ITKD  129 (307)
Q Consensus        52 ~~V~~~G~FD~lH~GH~~lL~qAk~~gd~LiVgV~sD~~i~~~Kg~pi~s~eER~~ll~-~~k~VD~Vv~~~py~-~t~d  129 (307)
                      .++++.|+||++|.||+.++++|++.+|+|+|++.+++    .| ++++|.+||++|++ ++++++.+.+ .+|. .+.+
T Consensus        13 ~i~i~~GsFdP~H~GHl~l~~~A~~~~D~viv~v~~~~----~k-k~~~~~~~R~~ml~~a~~~~~~v~v-~~~e~~tvd   86 (173)
T 1vlh_A           13 MKAVYPGSFDPITLGHVDIIKRALSIFDELVVLVTENP----RK-KCMFTLEERKKLIEEVLSDLDGVKV-DVHHGLLVD   86 (173)
T ss_dssp             CEEEEEECCTTCCHHHHHHHHHHHTTCSEEEEEEECCT----TC-CCSSCHHHHHHHHHHHTTTCTTEEE-EEECSCHHH
T ss_pred             eEEEEEEEECcCcHHHHHHHHHHHHHCCEEEEEEeCCC----CC-CCCCCHHHHHHHHHHHhcCCCCEEE-ecCcchHHH
Confidence            35999999999999999999999999999999999975    33 48899999999999 6888888766 3443 3455


Q ss_pred             HHHHHHHhcCccEEEEcCCCCcCCCCCchHHHH------Hh---CCE-EEEcCC--CCCCCHHHHHHHHHhh
Q 021802          130 FMKKLFDEYNIDYIIHGDDPCVLPDGTDAYELA------KK---AGR-YKQIKR--TEGVSSTDIVGRMLLC  189 (307)
Q Consensus       130 fle~ll~~l~~d~VV~GdD~~fg~~g~d~y~~l------k~---~g~-v~vv~r--t~~VSST~Ir~rIl~~  189 (307)
                      ++    +++++++++.|-.     .|.|-....      +.   ... +..+..  ...||||.||+++...
T Consensus        87 ~l----~~l~~~~~i~gl~-----~w~d~~~~~~~~~~~r~~~~~~~~i~l~~~~~~~~iSST~IR~~i~~g  149 (173)
T 1vlh_A           87 YL----KKHGIKVLVRGLR-----AVTDYEYELQMALANKKLYSDLETVFLIASEKFSFISSSLVKEVALYG  149 (173)
T ss_dssp             HH----HHHTCCEEEEEEC-----TTSCHHHHHHHHHHHHHHSTTCEEEEEECCGGGTTCCHHHHHHHHHTT
T ss_pred             HH----HHhCCCeEEeCCC-----cccchhhccchhhcCCCCCCCCcEEEEeCCCCCCceeHHHHHHHHHcC
Confidence            55    4578999998832     222210111      11   122 222222  2469999999999754

>1yum_A 'probable nicotinate-nucleotide adenylyltransferase; alpha/beta domain; HET: CIT NCN; 1.70A {Pseudomonas aeruginosa} PDB: 1yul_A* 1yun_A*

Probab=99.56  E-value=1.2e-14  Score=132.78  Aligned_cols=94  Identities=22%  Similarity=0.296  Sum_probs=76.8

Q ss_pred             CeEEEEecccCcCCHHHHHHHHHHHHcC--CeEEEEEeCChhhhhcCCCCCCCHHHHHHHHHH-ccCccEEEEcCCCc--
Q 021802           51 PVRVYMDGCFDMMHYGHCNALRQARALG--DQLVVGVVSDAEIIANKGPPVTPLHERMIMVNA-VKWVDEVISDAPYA--  125 (307)
Q Consensus        51 ~~~V~~~G~FD~lH~GH~~lL~qAk~~g--d~LiVgV~sD~~i~~~Kg~pi~s~eER~~ll~~-~k~VD~Vv~~~py~--  125 (307)
                      .+++++.|+||++|.||+.++++|++.+  |++++++..++.   .|..++++.++|++|++. +++++.+.+ .+|.  
T Consensus        23 ~~i~i~~GsFdPiH~GHl~li~~a~~~~~ld~v~v~~~~~~p---~K~~~~~~~~~R~~ml~~a~~~~~~v~v-~~~e~~   98 (242)
T 1yum_A           23 KRIGLFGGTFDPVHIGHMRSAVEMAEQFALDELRLLPNARPP---HRETPQVSAAQRLAMVERAVAGVERLTV-DPRELQ   98 (242)
T ss_dssp             CEEEEEEECCTTCCHHHHHHHHHHHHHHTCSEEEEEECCCCG---GGSCTTCCHHHHHHHHHHHHTTCTTEEE-CCGGGG
T ss_pred             ceEEEEEeeCcHhhHHHHHHHHHHHHHcCCCEEEEEEcCCCC---CCCCCCCCHHHHHHHHHHHhcCCCeEEE-eeeeec
Confidence            3468999999999999999999999987  999999988752   344578999999999995 789998877 5553  


Q ss_pred             -----ccHHHHHHHHHhcCcc---EEEEcCC
Q 021802          126 -----ITKDFMKKLFDEYNID---YIIHGDD  148 (307)
Q Consensus       126 -----~t~dfle~ll~~l~~d---~VV~GdD  148 (307)
                           .+.++++.+-.+++++   ++++|.|
T Consensus        99 ~~~~sytvdtl~~l~~~~~p~~~~~fI~G~D  129 (242)
T 1yum_A           99 RDKPSYTIDTLESVRAELAADDQLFMLIGWD  129 (242)
T ss_dssp             SSSSCCHHHHHHHHHHHSCTTCEEEEEEEHH
T ss_pred             CCCCCCHHHHHHHHHHHhCCCCcEEEEEehh
Confidence                 5678887765667677   8889986

>2h29_A Probable nicotinate-nucleotide adenylyltransferase; NADD, namnat, nmnat; HET: DND; 2.00A {Staphylococcus aureus} PDB: 2h2a_A*

Probab=99.51  E-value=3.8e-14  Score=123.94  Aligned_cols=132  Identities=19%  Similarity=0.131  Sum_probs=94.0

Q ss_pred             eEEEEecccCcCCHHHHHHHHHHHHcC--CeEEEEEeCChhhhhcCC-CCCCCHHHHHHHHHH-ccCccEEEEcCCC---
Q 021802           52 VRVYMDGCFDMMHYGHCNALRQARALG--DQLVVGVVSDAEIIANKG-PPVTPLHERMIMVNA-VKWVDEVISDAPY---  124 (307)
Q Consensus        52 ~~V~~~G~FD~lH~GH~~lL~qAk~~g--d~LiVgV~sD~~i~~~Kg-~pi~s~eER~~ll~~-~k~VD~Vv~~~py---  124 (307)
                      +++++.|+|||+|.||+.++++|++.+  |++++.+++++.   .|+ +++++.++|++|++. ++..+.+.+ .+|   
T Consensus         3 ~~~v~~GsFdp~H~GH~~l~~~a~~~~~~d~v~~~~~~~~~---~k~~~~~~~~~~R~~m~~~a~~~~~~v~v-~~~e~~   78 (189)
T 2h29_A            3 KIVLYGGQFNPIHTAHMIVASEVFHELQPDEFYFLPSFMSP---LKKHHDFIDVQHRLTMIQMIIDELGFGDI-CDDEIK   78 (189)
T ss_dssp             EEEEEEECCTTCCHHHHHHHHHHHHHHCCSEEEEEECSBCT---TSCCCSSCCCHHHHHHHHHHHHHHTCCEE-CCHHHH
T ss_pred             eEEEEEecCCcccHHHHHHHHHHHHHcCCCEEEEEECCCCC---CCcCCCCCCHHHHHHHHHHHHcCCCCEEE-ehHHhc
Confidence            358999999999999999999999986  888877777653   343 578999999999995 666666655 332   


Q ss_pred             ----cccHHHHHHHHHhcCcc---EEEEcCCCC-cCCCCCchHHHHHhCCEEEEcCCC-----------------CCCCH
Q 021802          125 ----AITKDFMKKLFDEYNID---YIIHGDDPC-VLPDGTDAYELAKKAGRYKQIKRT-----------------EGVSS  179 (307)
Q Consensus       125 ----~~t~dfle~ll~~l~~d---~VV~GdD~~-fg~~g~d~y~~lk~~g~v~vv~rt-----------------~~VSS  179 (307)
                          +++.++++.+.+.+ ++   ++++|.|.. -...|.+. +.+-....+.+++|.                 ..|||
T Consensus        79 ~~~~syt~dtl~~l~~~~-p~~~~~~i~G~D~~~~~~~W~~~-~~i~~~~~~~v~~R~~~~~~~~~~i~~~~~~~~~ISS  156 (189)
T 2h29_A           79 RGGQSYTYDTIKAFKEQH-KDSELYFVIGTDQYNQLEKWYQI-EYLKEMVTFVVVNRDKNSQNVENAMIAIQIPRVDISS  156 (189)
T ss_dssp             HCSBCCHHHHHHHHHHHS-TTEEEEEEEEHHHHTTGGGSTTH-HHHHHHCEEEEECCSSSCCCCCTTSEEECCCCBCCCH
T ss_pred             CCCCCCHHHHHHHHHHHC-CCCcEEEEEecchhhhhccccCH-HHHHhhCcEEEEECCCCccccCCcEEEEcCCCCccCH
Confidence                24667777665545 55   899998842 12345543 333334566666653                 36999


Q ss_pred             HHHHHHHHhh
Q 021802          180 TDIVGRMLLC  189 (307)
Q Consensus       180 T~Ir~rIl~~  189 (307)
                      |.||+++...
T Consensus       157 T~IR~~i~~g  166 (189)
T 2h29_A          157 TMIRQRVSEG  166 (189)
T ss_dssp             HHHHHHHHTT
T ss_pred             HHHHHHHHcC
Confidence            9999998754

>1ej2_A Nicotinamide mononucleotide adenylyltransferase; dinucleotide binding fold, structural genomics, PSI; HET: NAD; 1.90A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: c.26.1.3 PDB: 1m8g_A* 1hyb_A* 1m8j_A* 1m8f_A* 1m8k_A*

Probab=99.48  E-value=9e-14  Score=121.01  Aligned_cols=123  Identities=17%  Similarity=0.145  Sum_probs=84.3

Q ss_pred             EEEEecccCcCCHHHHHHHHHHHHcCCeEEEEE-eCChhhhhcCCCCCCCHHHHHHHHHHc-cCc----cEEEEcCCCc-
Q 021802           53 RVYMDGCFDMMHYGHCNALRQARALGDQLVVGV-VSDAEIIANKGPPVTPLHERMIMVNAV-KWV----DEVISDAPYA-  125 (307)
Q Consensus        53 ~V~~~G~FD~lH~GH~~lL~qAk~~gd~LiVgV-~sD~~i~~~Kg~pi~s~eER~~ll~~~-k~V----D~Vv~~~py~-  125 (307)
                      ++++.|+|||+|.||+.++++|++.+|+++|++ +.++   ..|.++++|.+||+++++.. ...    |.+.+ .+++ 
T Consensus         5 ~~i~~G~Fdp~H~GH~~l~~~a~~~~d~v~v~v~~~~~---p~~~~~~~~~~~R~~~~~~a~~~~~~~~~~v~v-~~~d~   80 (181)
T 1ej2_A            5 RGLLVGRMQPFHRGHLQVIKSILEEVDELIICIGSAQL---SHSIRDPFTAGERVMMLTKALSENGIPASRYYI-IPVQD   80 (181)
T ss_dssp             EEEEEECCTTCCHHHHHHHHHHTTTCSEEEEEECSTTC---CSSSSSCSCHHHHHHHHHHHHHHTTCCGGGEEE-EECCC
T ss_pred             EEEEEEEcCCcCHHHHHHHHHHHHhCCeeEEEECCCCC---CcCCCCCCCHHHHHHHHHHHHhhCCCCCCcEEE-EecCc
Confidence            689999999999999999999999999998888 4443   22334578999999999873 333    45544 3332 


Q ss_pred             --cc---HHHHHHHHHhcCccEEEEcCCCCcCCCCCchHHHHHh-CCEEEEcCCCC--CCCHHHHHHHHHhh
Q 021802          126 --IT---KDFMKKLFDEYNIDYIIHGDDPCVLPDGTDAYELAKK-AGRYKQIKRTE--GVSSTDIVGRMLLC  189 (307)
Q Consensus       126 --~t---~dfle~ll~~l~~d~VV~GdD~~fg~~g~d~y~~lk~-~g~v~vv~rt~--~VSST~Ir~rIl~~  189 (307)
                        ..   .+|++++.  .+++.+++|.|+.        ..+.+. ...+..++...  .||||.||+++...
T Consensus        81 ~~~~~~w~~~~~~l~--~~~~~~v~gr~~~--------~~~~~~~~i~~~~~~~~~~~~ISST~IR~~l~~G  142 (181)
T 1ej2_A           81 IECNALWVGHIKMLT--PPFDRVYSGNPLV--------QRLFSEDGYEVTAPPLFYRDRYSGTEVRRRMLDD  142 (181)
T ss_dssp             CSCHHHHHHHHHHHS--CCCSEEECCCHHH--------HHHHHHTTCCEECCCCSSTTTSSHHHHHHHHHHT
T ss_pred             cCCHHHHHHHHHHHC--CCCCEEEECCHHH--------HHHHHhCCeEEEecCCCccCcCcHHHHHHHHHcC
Confidence              11   23444332  4788899886641        122332 34555565543  59999999999754

>3gmi_A UPF0348 protein MJ0951; protein with unknown function, structural genomics, PSI, MCS protein structure initiative; 1.91A {Methanocaldococcus jannaschii}

Probab=99.48  E-value=2.5e-13  Score=130.85  Aligned_cols=93  Identities=20%  Similarity=0.220  Sum_probs=76.3

Q ss_pred             CCCeEEEEecccCcCCHHHHHHHHHHHHcCCeEEEEEeCChh--hhhcCC-CCCCCHHHHHHHHHHccCccEEEEcCCCc
Q 021802           49 KKPVRVYMDGCFDMMHYGHCNALRQARALGDQLVVGVVSDAE--IIANKG-PPVTPLHERMIMVNAVKWVDEVISDAPYA  125 (307)
Q Consensus        49 ~~~~~V~~~G~FD~lH~GH~~lL~qAk~~gd~LiVgV~sD~~--i~~~Kg-~pi~s~eER~~ll~~~k~VD~Vv~~~py~  125 (307)
                      .....|+++|.|||+|.||+.+|++|++ .+ ++++|-+.+.  +.  ++ +.++|.++|.++++.+ |||.|++ .||.
T Consensus        50 ~~~~~v~~lG~FDg~H~GHq~lI~~a~~-~~-~~~~Vms~~~~~vq--rg~~~l~~~~~R~~~~~~~-GvD~vie-lpF~  123 (357)
T 3gmi_A           50 NKDKIVCDFTEYNPLHKGHKYALEKGKE-HG-IFISVLPGPLERSG--RGIPYFLNRYIRAEMAIRA-GADIVVE-GPPM  123 (357)
T ss_dssp             TCCCEEEEECCCTTCCHHHHHHHHHHHT-SS-EEEEEECCTTSBCT--TSSBCSSCHHHHHHHHHHH-TCSEEEE-CCCG
T ss_pred             CCCCEEEEEEecCccCHHHHHHHHHHHH-cC-CeEEEEcCchHHhc--CCCCcCCCHHHHHHHHHHC-CCCEEEE-cCch
Confidence            3345799999999999999999999999 44 5555555432  32  34 6799999999999998 9999999 8985


Q ss_pred             c---cHHHHHH---HHHhcCccEEEEcC
Q 021802          126 I---TKDFMKK---LFDEYNIDYIIHGD  147 (307)
Q Consensus       126 ~---t~dfle~---ll~~l~~d~VV~Gd  147 (307)
                      .   +++|++.   ++.++++++||+|.
T Consensus       124 ~~~s~~~Fv~~~v~ll~~l~~~~iv~G~  151 (357)
T 3gmi_A          124 GIMGSGQYMRCLIKMFYSLGAEIIPRGY  151 (357)
T ss_dssp             GGSCHHHHHHHHHHHHHHHTCCEEEEEE
T ss_pred             hhCCHHHHHHHHHHHHHHcCCCEEEECC
Confidence            3   4789876   88889999999998

>2qjo_A Bifunctional NMN adenylyltransferase/nudix hydrol; two individual domains, hydrolase; HET: APR NAD; 2.60A {Synechocystis SP}

Probab=99.48  E-value=8.5e-14  Score=130.25  Aligned_cols=130  Identities=17%  Similarity=0.063  Sum_probs=89.9

Q ss_pred             CeEEEEecccCcCCHHHHHHHHHHHHcCCeEEEEEeCChhhhhcCCCCCCCHHHHHHHHHHccCccE----EEEcCCCcc
Q 021802           51 PVRVYMDGCFDMMHYGHCNALRQARALGDQLVVGVVSDAEIIANKGPPVTPLHERMIMVNAVKWVDE----VISDAPYAI  126 (307)
Q Consensus        51 ~~~V~~~G~FD~lH~GH~~lL~qAk~~gd~LiVgV~sD~~i~~~Kg~pi~s~eER~~ll~~~k~VD~----Vv~~~py~~  126 (307)
                      .++++++|+|||+|.||+.++++|++.+|+++|+|.+++.-  .+....++.++|++|++.. ..|.    ++. .++.-
T Consensus         7 ~~~~i~~G~FdP~H~GH~~li~~a~~~~d~v~v~v~~~~~p--~~~~~~~~~~~R~~m~~~~-~~~~~~~~~~~-i~~~d   82 (341)
T 2qjo_A            7 YQYGIYIGRFQPFHLGHLRTLNLALEKAEQVIIILGSHRVA--ADTRNPWRSPERMAMIEAC-LSPQILKRVHF-LTVRD   82 (341)
T ss_dssp             EEEEEEEECCTTCCHHHHHHHHHHHHHEEEEEEEEEEETCC--CCSSSCSCHHHHHHHHHTT-SCHHHHTTEEE-EEEEC
T ss_pred             eeEEEEEEEeCCCCHHHHHHHHHHHHhCCeEEEEECCcccC--CCCCCCCCHHHHHHHHHHH-hhhccCCeEEE-EECCC
Confidence            35799999999999999999999999999988877775421  2223458999999999985 4443    433 23321


Q ss_pred             -------cHHHHHHHHHhcC---ccEEEEcCCCCcCCCCCchHHHHHh--CCEEEEcCCCCCCCHHHHHHHHHhhh
Q 021802          127 -------TKDFMKKLFDEYN---IDYIIHGDDPCVLPDGTDAYELAKK--AGRYKQIKRTEGVSSTDIVGRMLLCV  190 (307)
Q Consensus       127 -------t~dfle~ll~~l~---~d~VV~GdD~~fg~~g~d~y~~lk~--~g~v~vv~rt~~VSST~Ir~rIl~~~  190 (307)
                             ..+|++++++.+.   ++++++|.++....    .  ..+.  ...+..++....||||.||+++....
T Consensus        83 ~~~~~~~w~~~~~~l~~~l~r~~~~~~~~g~~~~~~~----~--~~~~~~~~~~~~~~~~~~iSST~IR~~l~~g~  152 (341)
T 2qjo_A           83 WLYSDNLWLAAVQQQVLKITGGSNSVVVLGHRKDASS----Y--YLNLFPQWDYLETGHYPDFSSTAIRGAYFEGK  152 (341)
T ss_dssp             CTTCHHHHHHHHHHHHHHHHTTCSCEEEEECCCSGGG----G--GGGSCTTSEEEECCCCTTCCHHHHHHHHHHTC
T ss_pred             CcCChHHHHHHHHHHhHHhcCCCceEEEEcCCCCCCh----H--HHHhccccceeecccCCCCCcHHHHHHHHcCC
Confidence                   1466655555443   78999998864211    1  1111  34566666567899999999998553

>3do8_A Phosphopantetheine adenylyltransferase; protein with unknown function, structural genomics, MCSG, PSI-2, protein structure initiative; 1.60A {Archaeoglobus fulgidus}

Probab=99.46  E-value=1.5e-14  Score=123.21  Aligned_cols=125  Identities=22%  Similarity=0.304  Sum_probs=85.3

Q ss_pred             EEEEecccCcCCHHHHHHHHHHHHcC-CeEEEEEeCChhhhhcCCCCCCCHHHHHHHHHH-c-cC----ccEEEEcCCCc
Q 021802           53 RVYMDGCFDMMHYGHCNALRQARALG-DQLVVGVVSDAEIIANKGPPVTPLHERMIMVNA-V-KW----VDEVISDAPYA  125 (307)
Q Consensus        53 ~V~~~G~FD~lH~GH~~lL~qAk~~g-d~LiVgV~sD~~i~~~Kg~pi~s~eER~~ll~~-~-k~----VD~Vv~~~py~  125 (307)
                      ++++.|+||++|.||+.++++|++++ |+++|++++++...+ +..++++.+||++|++. + +.    +.-+-+..+|.
T Consensus         2 ~~i~gGtFDPiH~GHl~l~~~a~~~~~d~viv~v~~~~~~~k-~~~~~~~~~~R~~ml~~a~~~~~~~~~~i~~i~D~~g   80 (148)
T 3do8_A            2 KVALGGTFEPLHEGHKKLIDVAIKLGGRDITIGVTSDRMARA-RIRSVLPFAIRAENVKRYVMRKYGFEPEIVKITNPYG   80 (148)
T ss_dssp             CEEEEECCSSCCHHHHHHHHHHHHHHTTCEEEEEECHHHHHH-HSCCCSCHHHHHHHHHHHHHHHHSSCCEEEEECSTTT
T ss_pred             EEEEEeeCCCCCHHHHHHHHHHHHhCCCEEEEEECCCccccc-cCCCCCCHHHHHHHHHHHHhcccCCcEEEEeecCCCC
Confidence            58999999999999999999999986 899999999986522 13689999999999887 3 22    22222234454


Q ss_pred             ccHHHHHHHHHhcCccEEEEcCCCCcCCCCCchHHHHH-hCC---EEEEcCCC-----CCCCHHHHHHHHHh
Q 021802          126 ITKDFMKKLFDEYNIDYIIHGDDPCVLPDGTDAYELAK-KAG---RYKQIKRT-----EGVSSTDIVGRMLL  188 (307)
Q Consensus       126 ~t~dfle~ll~~l~~d~VV~GdD~~fg~~g~d~y~~lk-~~g---~v~vv~rt-----~~VSST~Ir~rIl~  188 (307)
                      .+.        ..++|++|++.+-..+  +..-.++.+ .+.   .+.+++..     +.||||.||++++.
T Consensus        81 ~~~--------~~~~d~ivvs~Et~~~--~~~l~~~~~~~G~~~l~V~~v~~~~~~~~~~iSST~IR~~~id  142 (148)
T 3do8_A           81 KTL--------DVDFEYLVVSPETYEM--ALKINQKREELGKRKITIVKVDWMMAEDGKPISSTRIKRGEID  142 (148)
T ss_dssp             TTT--------TSCCSEEEECTTTHHH--HHHHHHHHHHHTCCCCEEEEEECCC-------CCCCCCCSCCC
T ss_pred             CCC--------CCCCCEEEEChhhccc--HHHHHHHHHHcCCCeeEEEEeccEEcCCCCEEEHHHHHHHHHh
Confidence            332        2578999999885432  111111222 245   56666553     46999999998764

>3h05_A Uncharacterized protein VPA0413; nucleotidylyl, transferase, MCSG, midwest center for structu genomics, PSI; 1.65A {Vibrio parahaemolyticus}

Probab=99.43  E-value=3.4e-13  Score=117.97  Aligned_cols=132  Identities=16%  Similarity=0.112  Sum_probs=91.7

Q ss_pred             eEEEEecccCcCCHHHHHHHHHHHHcCCeEEEEEeCChhhhhcCCCCCCCHHHHHHHHHH-ccCcc--EEEEc-------
Q 021802           52 VRVYMDGCFDMMHYGHCNALRQARALGDQLVVGVVSDAEIIANKGPPVTPLHERMIMVNA-VKWVD--EVISD-------  121 (307)
Q Consensus        52 ~~V~~~G~FD~lH~GH~~lL~qAk~~gd~LiVgV~sD~~i~~~Kg~pi~s~eER~~ll~~-~k~VD--~Vv~~-------  121 (307)
                      +++++.|+||++|.||+.+++ |.+..|++++++..+.   ..| +++.+.++|++|++. ++..+  .+.+.       
T Consensus         3 ~igi~gGsFdPih~GHl~i~~-a~~~~d~v~~~p~~~~---~~k-~~~~~~~~R~~m~~~a~~~~~~~~~~v~~~E~~l~   77 (177)
T 3h05_A            3 KIAIFGSAFNPPSLGHKSVIE-SLSHFDLVLLEPSIAH---AWG-KNMLDYPIRCKLVDAFIKDMGLSNVQRSDLEQALY   77 (177)
T ss_dssp             EEEEEEECCSSCCHHHHHHHT-TCTTSSEEEEEECC-----------CCCHHHHHHHHHHHHHHHCCTTEEECCHHHHHC
T ss_pred             EEEEEEeccchhhHHHHHHHH-HHHHCCEEEEEECCCC---CCC-CCCCCHHHHHHHHHHHHhcCCCCcEEEEehhhhcc
Confidence            468999999999999999998 7777799999988752   123 478999999999987 33221  23221       


Q ss_pred             -CC-CcccHHHHHHHHHhcC-cc-EEEEcCCCC-cCCCCCchHHHHHhCCEEEEcCCCCCCCHHHHHHHHHhh
Q 021802          122 -AP-YAITKDFMKKLFDEYN-ID-YIIHGDDPC-VLPDGTDAYELAKKAGRYKQIKRTEGVSSTDIVGRMLLC  189 (307)
Q Consensus       122 -~p-y~~t~dfle~ll~~l~-~d-~VV~GdD~~-fg~~g~d~y~~lk~~g~v~vv~rt~~VSST~Ir~rIl~~  189 (307)
                       .. .+.|.+.++.+.+.+. .+ ++++|.|.. ..+.|.+ ++.+-+...+.+++|...||||+||+++...
T Consensus        78 ~~~~~syT~dTl~~l~~~~p~~~~~~iiG~D~l~~l~~W~~-~~~l~~~~~~vv~~r~~~iSST~IR~~i~~g  149 (177)
T 3h05_A           78 QPGQSVTTYALLEKIQEIYPTADITFVIGPDNFFKFAKFYK-AEEITERWTVMACPEKVKIRSTDIRNALIEG  149 (177)
T ss_dssp             ----CCCHHHHHHHHHHHSTTSEEEEEECHHHHHTGGGSTT-HHHHHHHSEEEECCCSSCCCHHHHHHHHHHT
T ss_pred             cCCCCcchHHHHHHHHHHhcCCCeEEEEecchhhhcccchh-HHHHHHhCCEEEEcCCCCCcHHHHHHHHHcC
Confidence             11 3356677776655552 34 688898843 3356765 4444445689999998899999999999865

>1f9a_A Hypothetical protein MJ0541; alpha/beta, transferase, structural genomics; HET: ATP; 2.00A {Methanocaldococcus jannaschii} SCOP: c.26.1.3

Probab=99.38  E-value=7.5e-12  Score=107.59  Aligned_cols=125  Identities=19%  Similarity=0.260  Sum_probs=80.1

Q ss_pred             EEEEecccCcCCHHHHHHHHHHHHcCCeEEEEE-eCChhhhhcCCCCCCCHHHHHHHHHH-ccCcc-EEEEcCCCc---c
Q 021802           53 RVYMDGCFDMMHYGHCNALRQARALGDQLVVGV-VSDAEIIANKGPPVTPLHERMIMVNA-VKWVD-EVISDAPYA---I  126 (307)
Q Consensus        53 ~V~~~G~FD~lH~GH~~lL~qAk~~gd~LiVgV-~sD~~i~~~Kg~pi~s~eER~~ll~~-~k~VD-~Vv~~~py~---~  126 (307)
                      ++++.|+||++|.||+.++++|++.+|+++|++ +.++   ..|..+.++.++|++|++. ++..+ .+.. .+++   .
T Consensus         2 i~i~~GsFdp~H~GH~~l~~~a~~~~d~v~v~v~~~~~---p~~~~~~~~~~~R~~m~~~~~~~~~~~v~v-~~~d~l~~   77 (168)
T 1f9a_A            2 RGFIIGRFQPFHKGHLEVIKKIAEEVDEIIIGIGSAQK---SHTLENPFTAGERILMITQSLKDYDLTYYP-IPIKDIEF   77 (168)
T ss_dssp             EEEEEECCTTCCHHHHHHHHHHTTTCSEEEEEECSTTC---CSSSSCCSCHHHHHHHHHHHHTTSSCEEEE-EECCCCSC
T ss_pred             EEEEEEecCCcCHHHHHHHHHHHHhCCeEEEEEcCCCC---CCCCCCCCCHHHHHHHHHHHHhcCCCceEE-EeeCCccc
Confidence            589999999999999999999999999998888 4454   2233345799999999996 66665 4433 1221   1


Q ss_pred             cHHHHHHHHH-hcCccEEEEcCCCCcCCCCCchHHHHHh-CCEEEEcCCCC--CCCHHHHHHHHHhh
Q 021802          127 TKDFMKKLFD-EYNIDYIIHGDDPCVLPDGTDAYELAKK-AGRYKQIKRTE--GVSSTDIVGRMLLC  189 (307)
Q Consensus       127 t~dfle~ll~-~l~~d~VV~GdD~~fg~~g~d~y~~lk~-~g~v~vv~rt~--~VSST~Ir~rIl~~  189 (307)
                      ...+.+.+.+ .+.++.++.|.+.        ...+... ...+...+..+  .||||.||+++...
T Consensus        78 ~~~w~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~i~~~~~~~~~~~~ISST~IR~~~~~g  136 (168)
T 1f9a_A           78 NSIWVSYVESLTPPFDIVYSGNPL--------VRVLFEERGYEVKRPEMFNRKEYSGTEIRRRMLNG  136 (168)
T ss_dssp             GGGHHHHHHHHSCCCSEEECCCHH--------HHHHHHHTTCEEECCCCCSTTTSSHHHHHHHHHHT
T ss_pred             HHHHHHHHHHhccCCCEEEECcHH--------HHHhhhhcCcEEEeCCccccCcccHHHHHHHHHcC
Confidence            1223322111 1456777766432        1122222 23444444433  59999999999754

>1kqn_A Nmnat, nicotinamide mononucleotide adenylyl transferase; nucleotidyltransferase superfamily; HET: NAD; 2.20A {Homo sapiens} SCOP: c.26.1.3 PDB: 1kqo_A* 1kr2_A* 1kku_A 1gzu_A*

Probab=99.33  E-value=5.4e-12  Score=117.64  Aligned_cols=84  Identities=21%  Similarity=0.244  Sum_probs=60.4

Q ss_pred             CCeEEEEecccCcCCHHHHHHHHHHHHcC--C---eEEEEE---eCChhhhhcCCCCCCCHHHHHHHHHH-ccCccEEEE
Q 021802           50 KPVRVYMDGCFDMMHYGHCNALRQARALG--D---QLVVGV---VSDAEIIANKGPPVTPLHERMIMVNA-VKWVDEVIS  120 (307)
Q Consensus        50 ~~~~V~~~G~FD~lH~GH~~lL~qAk~~g--d---~LiVgV---~sD~~i~~~Kg~pi~s~eER~~ll~~-~k~VD~Vv~  120 (307)
                      .++++++.|+||++|.||+.++++|++.+  +   +++|++   ++++   ..| +++++.++|++|++. +.+.+.+.+
T Consensus         7 ~~~i~i~gGsFDPiH~GHl~l~~~a~~~~~~d~~~~vvv~~f~P~~~~---~~K-~~l~s~~~R~~ml~~ai~~~~~~~v   82 (279)
T 1kqn_A            7 TEVVLLACGSFNPITNMHLRLFELAKDYMNGTGRYTVVKGIISPVGDA---YKK-KGLIPAYHRVIMAELATKNSKWVEV   82 (279)
T ss_dssp             EEEEEEEEECCTTCCHHHHHHHHHHHHHHHHTSSEEEEEEEEEECCGG---GCC-TTCCCHHHHHHHHHHHTTTCSSEEE
T ss_pred             CceEEEEEeeecHhhHHHHHHHHHHHHHhcccCCceEEEEEEcCCCCC---ccc-cCCCCHHHHHHHHHHHhcCCCcEEE
Confidence            34568999999999999999999999876  3   254432   3322   233 468999999999997 568888877


Q ss_pred             cCCC-------cccHHHHHHHHHhc
Q 021802          121 DAPY-------AITKDFMKKLFDEY  138 (307)
Q Consensus       121 ~~py-------~~t~dfle~ll~~l  138 (307)
                       .+|       +.|.+.++.+-+++
T Consensus        83 -~~~E~~~~~~syTidtL~~l~~~~  106 (279)
T 1kqn_A           83 -DTWESLQKEWKETLKVLRHHQEKL  106 (279)
T ss_dssp             -CCTGGGCSSCCCHHHHHHHHHHHH
T ss_pred             -eccccccCCCCcHHHHHHHHHHHH
Confidence             444       34566676655555

>2ejc_A Pantoate--beta-alanine ligase; X-RAY diffraction, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.40A {Thermotoga maritima}

Probab=99.31  E-value=2.2e-13  Score=127.26  Aligned_cols=136  Identities=17%  Similarity=0.174  Sum_probs=87.8

Q ss_pred             hhhcCCCCeEEEEecccCcCCHHHHHHHHHHHHcCCeEEEEEeCChhhhhcCC---CCCCCHHHHHHHHHHccCccEEEE
Q 021802           44 WTRKKKKPVRVYMDGCFDMMHYGHCNALRQARALGDQLVVGVVSDAEIIANKG---PPVTPLHERMIMVNAVKWVDEVIS  120 (307)
Q Consensus        44 ~~~~~~~~~~V~~~G~FD~lH~GH~~lL~qAk~~gd~LiVgV~sD~~i~~~Kg---~pi~s~eER~~ll~~~k~VD~Vv~  120 (307)
                      .++..++  +|.+.|+||++|.||+.+|++|++.+|.++|++..+|.-...+.   +.+.+.++|.++++++ +||.++.
T Consensus        16 ~~r~~g~--~V~~vgtfdgLH~GH~sLI~~A~~~ad~vVVSffvnP~qf~~~ed~~~yp~tle~d~~lL~~~-GVD~vf~   92 (280)
T 2ejc_A           16 EMREKKK--TIGFVPTMGYLHEGHLSLVRRARAENDVVVVSIFVNPTQFGPNEDYERYPRDFERDRKLLEKE-NVDCIFH   92 (280)
T ss_dssp             HHHHTTC--CEEEEEECSCCCHHHHHHHHHHHHHSSEEEEEECCCGGGCCTTSCGGGSCCCHHHHHHHHHTT-TCSEEEC
T ss_pred             HHHhcCC--EEEEEcCCccccHHHHHHHHHHHHhCCEEEEEEeCChHHhcCCcccccCCCCHHHHHHHHHHC-CCCEEEe
Confidence            3444443  35666999999999999999999999999999977764221111   3467899999999998 7999988


Q ss_pred             cCCCc--ccHHHH--------HH-HHHhcCccE------------EEEc-CCCCcCCCCCchHHHHHhC-----CEEEE-
Q 021802          121 DAPYA--ITKDFM--------KK-LFDEYNIDY------------IIHG-DDPCVLPDGTDAYELAKKA-----GRYKQ-  170 (307)
Q Consensus       121 ~~py~--~t~dfl--------e~-ll~~l~~d~------------VV~G-dD~~fg~~g~d~y~~lk~~-----g~v~v-  170 (307)
                       .++.  .+++|.        .. +..+.+|.+            .++| +|++||.+.......++++     ..+.+ 
T Consensus        93 -p~~~~m~p~~f~~~v~~~~~~~~l~G~~rp~hF~Gv~tvv~kLf~iv~p~~~~FG~kd~qq~~~l~~~~~dl~~~v~iv  171 (280)
T 2ejc_A           93 -PSVEEMYPPDFSTYVEETKLSKHLCGRSRPGHFRGVCTVVTKLFNIVKPHRAYFGQKDAQQFRVLRRMVRDLNMDVEMI  171 (280)
T ss_dssp             -CCHHHHSCTTCCCCCCCCSGGGTTTGGGSTTHHHHHHHHHHHHHHHHCCSEEEEEGGGHHHHHHHHHHHHHTTCCCEEE
T ss_pred             -CCHHHCCCcCceEEEEcCCcceEEecCCCCCeecceEEEEeeeceeccCceEEeCCCCCcCHHHHHHHHHHcCCeEEEE
Confidence             4431  112232        11 112223333            3334 5899997766666666653     23432 


Q ss_pred             -cCCC-----CCCCHHHHH
Q 021802          171 -IKRT-----EGVSSTDIV  183 (307)
Q Consensus       171 -v~rt-----~~VSST~Ir  183 (307)
                       ++..     ..+|||.+.
T Consensus       172 ~vp~vr~~dGlaiSSrn~y  190 (280)
T 2ejc_A          172 ECPIVREPDGLAMSSRNVY  190 (280)
T ss_dssp             EECCCBCTTSCBCCGGGGG
T ss_pred             eeCcEEcCCCCEeccCccc
Confidence             4442     358998753

>1nup_A FKSG76; NAD biosynthesis, mitochondria, pyridine adenylyltransferase catalysis, transferase; HET: NMN; 1.90A {Homo sapiens} SCOP: c.26.1.3 PDB: 1nuq_A* 1nur_A 1nus_A* 1nut_A* 1nuu_A*

Probab=99.22  E-value=2.8e-11  Score=110.81  Aligned_cols=88  Identities=18%  Similarity=0.176  Sum_probs=58.5

Q ss_pred             CeEEEEecccCcCCHHHHHHHHHHHHcCCe----EEEEEeCChhhhhcCCCCCCCHHHHHHHHHH-ccCccEEEEc----
Q 021802           51 PVRVYMDGCFDMMHYGHCNALRQARALGDQ----LVVGVVSDAEIIANKGPPVTPLHERMIMVNA-VKWVDEVISD----  121 (307)
Q Consensus        51 ~~~V~~~G~FD~lH~GH~~lL~qAk~~gd~----LiVgV~sD~~i~~~Kg~pi~s~eER~~ll~~-~k~VD~Vv~~----  121 (307)
                      .+++++.|+||++|.||+.++++|++.++.    .+|++...|.-...+.+++++.++|++|++. ++..+.+.++    
T Consensus         6 ~~i~i~~GsFdPiH~GHl~l~~~a~~~~~~~~~~~vv~~~~~p~~~~~~k~~~~~~~~R~~m~~~ai~~~~~~~v~~~E~   85 (252)
T 1nup_A            6 PVVLLACGSFNPITNMHLRMFEVARDHLHQTGMYQVIQGIISPVNDTYGKKDLAASHHRVAMARLALQTSDWIRVDPWES   85 (252)
T ss_dssp             EEEEEEEECCTTCCHHHHHHHHHHHHHHHHTTSEEEEEEEEEECCTTCSSSCCCCHHHHHHHHHHHGGGCSSEEECCHHH
T ss_pred             ceEEEEEecCcHhhHHHHHHHHHHHHHhcccCCceEEEEEEeCCCCcccCCCCCCHHHHHHHHHHHhcCCCceEeehHHh
Confidence            456899999999999999999999988632    4544333222111122468999999999986 5555555541    


Q ss_pred             --CCCcccHHHHHHHHHhc
Q 021802          122 --APYAITKDFMKKLFDEY  138 (307)
Q Consensus       122 --~py~~t~dfle~ll~~l  138 (307)
                        ..+..|.+.++.+.+++
T Consensus        86 ~~~~~syTidtL~~l~~~~  104 (252)
T 1nup_A           86 EQAQWMETVKVLRHHHSKL  104 (252)
T ss_dssp             HSSSCCCHHHHHHHHHHHH
T ss_pred             cCCCCCCHHHHHHHHHHHH
Confidence              22344566776654555

>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1

Probab=99.20  E-value=1.1e-10  Score=111.19  Aligned_cols=128  Identities=20%  Similarity=0.190  Sum_probs=83.1

Q ss_pred             eEEEEecccCcCCHHHHHHHHHHHHcCCeEEEEEeCChhh-----hhcCCCCCCCHHHHHHHHHH-ccCccE-EEE----
Q 021802           52 VRVYMDGCFDMMHYGHCNALRQARALGDQLVVGVVSDAEI-----IANKGPPVTPLHERMIMVNA-VKWVDE-VIS----  120 (307)
Q Consensus        52 ~~V~~~G~FD~lH~GH~~lL~qAk~~gd~LiVgV~sD~~i-----~~~Kg~pi~s~eER~~ll~~-~k~VD~-Vv~----  120 (307)
                      +++++.|+||++|.||+.++++|++.+|+|+|+|.+++..     ...+.+..+|.+||++|++. ++..+. +.+    
T Consensus         3 ~~~i~~GtFdP~h~GHl~~~~~a~~~~d~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~R~~m~~~~~~~~~~~~~v~~~~   82 (365)
T 1lw7_A            3 KVGVIFGKFYPVHTGHINMIYEAFSKVDELHVIVCSDTVRDLKLFYDSKMKRMPTVQDRLRWMQQIFKYQKNQIFIHHLV   82 (365)
T ss_dssp             CEEEEEECCSSCCHHHHHHHHHHHTTCSEEEEEEEECHHHHHHHHHHTTCSSCCCHHHHHHHHHHHTSTTTTTEEEEEEE
T ss_pred             cEEEEEEeeCCCCHHHHHHHHHHHHHCCEEEEEECCCCccccccccccccCCCCCHHHHHHHHHHHhhcCCCcEEEEEec
Confidence            3589999999999999999999999999999999998742     11111234999999999986 555443 322    


Q ss_pred             c--CCC--ccc---HHHHHHHHH--hcCccEEEEcCCCCcCCCCCchHHHHHhC-CEEEEcC--C-CCCCCHHHHHHHH
Q 021802          121 D--APY--AIT---KDFMKKLFD--EYNIDYIIHGDDPCVLPDGTDAYELAKKA-GRYKQIK--R-TEGVSSTDIVGRM  186 (307)
Q Consensus       121 ~--~py--~~t---~dfle~ll~--~l~~d~VV~GdD~~fg~~g~d~y~~lk~~-g~v~vv~--r-t~~VSST~Ir~rI  186 (307)
                      +  .|+  ...   .+.+..++.  .++++.++.++++.       .....+.. .++..++  + ...||||.||+..
T Consensus        83 ~~~~~~y~~~~~~~~~~~~~~i~~~~~~~~~~~~~e~~~-------~~~~~~~~~~e~v~l~~~~~~~~iSsT~IRe~~  154 (365)
T 1lw7_A           83 EDGIPSYPNGWQSWSEAVKTLFHEKHFEPSIVFSSEPQD-------KAPYEKYLGLEVSLVDPDRTFFNVSATKIRTTP  154 (365)
T ss_dssp             CSSSCCTTSCHHHHHHHHHHHHHHTTCCCSEEECSCGGG-------HHHHHHHTCCEEECCCSSCCSSCCCHHHHHHCG
T ss_pred             cCCCCCCchHHHHHHHHHHHHhhccCCCCcEEEECCCCC-------HHHHHHHcCCceEEeCCcccCCCCCHHHHHhCh
Confidence            1  121  000   122333444  36788777554432       11222333 4566665  3 3579999999865

>3hl4_A Choline-phosphate cytidylyltransferase A; rossmann fold, phospholipid synthesis, phosphatidylcholine, phosphocholine, CTP, CDP-choline; HET: CDC; 2.20A {Rattus norvegicus}

Probab=99.20  E-value=9.5e-12  Score=113.44  Aligned_cols=51  Identities=35%  Similarity=0.630  Sum_probs=44.9

Q ss_pred             CCCCCCCeEEEEeCcccccCHHHHHHHHHHHhC--CCEEEEEEeCcccccccC
Q 021802          243 KGPGPDARIIYIDGAFDLFHAGHVEILRIARGL--GDFLLVGIHNDQTVRLKN  293 (307)
Q Consensus       243 ~~~~~~~~~v~~~G~FDl~H~GHi~~L~~a~~~--g~~liVgv~~D~~v~~~~  293 (307)
                      ..|.++.++||++|+||+||.||+++|++|+++  ||+|||||++|+.+.++|
T Consensus        70 ~~~~~~~~~V~~~GtFD~~H~GHl~iL~rAk~lf~gD~LIVgV~~D~~v~~~K  122 (236)
T 3hl4_A           70 GTPCERPVRVYADGIFDLFHSGHARALMQAKNLFPNTYLIVGVCSDELTHNFK  122 (236)
T ss_dssp             CCCTTSCEEEEEEECCTTCCHHHHHHHHHHHTSSSSEEEEEEECCHHHHHHHT
T ss_pred             CCCCCCCeEEEEeccCCCCCHHHHHHHHHHHHhcCCCeEEEEEcccHHHhhcC
Confidence            345566789999999999999999999999999  699999999999887654

>2qjt_B Nicotinamide-nucleotide adenylyltransferase; two individual domains, hydrolase; HET: AMP; 2.30A {Francisella tularensis} PDB: 2r5w_B

Probab=99.07  E-value=1e-09  Score=103.26  Aligned_cols=129  Identities=16%  Similarity=0.166  Sum_probs=80.0

Q ss_pred             eEEEEecccCcCCHHHHHHHHHHHHcCCeEEEEEeCChhhhhcCCCCCCCHHHHHHHHHHc-cCc----cEEEE--cCC-
Q 021802           52 VRVYMDGCFDMMHYGHCNALRQARALGDQLVVGVVSDAEIIANKGPPVTPLHERMIMVNAV-KWV----DEVIS--DAP-  123 (307)
Q Consensus        52 ~~V~~~G~FD~lH~GH~~lL~qAk~~gd~LiVgV~sD~~i~~~Kg~pi~s~eER~~ll~~~-k~V----D~Vv~--~~p-  123 (307)
                      +++++.|+||++|.||+.++++|++.+|+++|+|.+++.-  .+..+.+|.++|++|++.. +..    +.+..  ... 
T Consensus         8 ~~~i~~GtFdP~h~GHl~~~~~a~~~~d~~~~~v~~~~~~--~~~~~~~~~~~R~~m~~~~~~~~~~~~~~~~~~~~~d~   85 (352)
T 2qjt_B            8 DISVFIGRFQPFHKGHLHNIIIALQNSKKVIINIGSCFNT--PNIKNPFSFEQRKQMIESDLQVAGIDLDTVVIEPLADY   85 (352)
T ss_dssp             EEEEEEECCTTCCHHHHHHHHHHHHSEEEEEEEEEEESCC--CCSSSCSCHHHHHHHHHHHHHHTTCCGGGEEEEEEECC
T ss_pred             cEEEEEEecCCCChHHHHHHHHHHHhCCcEEEEECCCCCC--cccCCCCCHHHHHHHHHHHhccccCccceEEEEEcCCC
Confidence            4689999999999999999999999999999999885421  1224668999999999873 111    23322  111 


Q ss_pred             -Cc--ccHHHHHHHHHh---cCccEEEEcCCCCcCCCCCchHHHHHhC--CEEEEcCCCCCCCHHHHHHHHHh
Q 021802          124 -YA--ITKDFMKKLFDE---YNIDYIIHGDDPCVLPDGTDAYELAKKA--GRYKQIKRTEGVSSTDIVGRMLL  188 (307)
Q Consensus       124 -y~--~t~dfle~ll~~---l~~d~VV~GdD~~fg~~g~d~y~~lk~~--g~v~vv~rt~~VSST~Ir~rIl~  188 (307)
                       +.  ...+++.+.+.+   +.++.+++|..     .+.+.+ .+...  .....++....+|||.||+++..
T Consensus        86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~~-----~~~~~~-~~~~~~~~~~~~~~~~~~iSST~IR~~~~~  152 (352)
T 2qjt_B           86 FYQEQKWQDELRKNVYKHAKNNNSIAIVGHI-----KDSSSY-YIRSFPEWDYIGVDNYKNFNATEFRQKFYN  152 (352)
T ss_dssp             TTCHHHHHHHHHHHHTTTSCSSCCEEECCBS-----SSSHHH-HHHHCTTSEECCBCCTTCCCHHHHHHHHHT
T ss_pred             cCChHHHHHHHHHHHHHhcccCCeEEEEcCC-----CCcchh-hhhcCCccceeccCCCCCCCchHHHHHHhc
Confidence             11  112333332211   23567777743     122233 22221  22333344567999999999985

>1v8f_A Pantoate-beta-alanine ligase; rossmann fold, dimer, structural genomics, riken STR genomics/proteomics initiative, RSGI; HET: P6G; 1.90A {Thermus thermophilus} SCOP: c.26.1.4 PDB: 1ufv_A

Probab=99.01  E-value=1.8e-11  Score=114.17  Aligned_cols=127  Identities=14%  Similarity=0.114  Sum_probs=89.6

Q ss_pred             eEEEEecccCcCCHHHHHHHHHHHHcCCeEEEEEeCChhhhhcCC---CCCCCHHHHHHHHHHccCccEEEEcCCCc--c
Q 021802           52 VRVYMDGCFDMMHYGHCNALRQARALGDQLVVGVVSDAEIIANKG---PPVTPLHERMIMVNAVKWVDEVISDAPYA--I  126 (307)
Q Consensus        52 ~~V~~~G~FD~lH~GH~~lL~qAk~~gd~LiVgV~sD~~i~~~Kg---~pi~s~eER~~ll~~~k~VD~Vv~~~py~--~  126 (307)
                      ..|.++|+   +|.||+.++++|++.++.++|.+..+|.-...+.   +.+.+.++|.++++++ +||.++. .+|+  .
T Consensus        20 ~~VpTmG~---lH~GH~~Li~~A~~~a~~vVvsff~nP~qf~~~ed~~~yp~tle~d~~ll~~~-GvD~vf~-p~f~~m~   94 (276)
T 1v8f_A           20 GFVPTMGY---LHRGHLALVERARRENPFVVVSVFVNPLQFGPGEDYHRYPRDLERDRALLQEA-GVDLLFA-PGVEEMY   94 (276)
T ss_dssp             EEEEECSS---CCHHHHHHHHHHHHHCSEEEEEECCCGGGCCTTSSTTTSCCCHHHHHHHHHHT-TCSEEEC-CCHHHHS
T ss_pred             eEEEeCCC---ccHHHHHHHHHHHHhCCEEEEEEECCHHHhCCCcccCCCCcCHHHHHHHHHhC-CCCEEEe-CChHhCC
Confidence            45789999   9999999999999999999999999885322221   4689999999999998 8999987 5543  1


Q ss_pred             cHHHHHHHHHhcCccEEEEcC----------------------C-CCcCCCCCchHHHHHhC-----CEEEEc--CC---
Q 021802          127 TKDFMKKLFDEYNIDYIIHGD----------------------D-PCVLPDGTDAYELAKKA-----GRYKQI--KR---  173 (307)
Q Consensus       127 t~dfle~ll~~l~~d~VV~Gd----------------------D-~~fg~~g~d~y~~lk~~-----g~v~vv--~r---  173 (307)
                      +++|...+....+++.+++|.                      | ++||.+.......+++.     ..+.++  +.   
T Consensus        95 p~~f~~~v~~~~~~~~vl~G~~RpghF~GV~TVv~kLf~iv~Pd~~~FG~kd~qq~~~l~~~~~dl~~~v~iv~~p~vr~  174 (276)
T 1v8f_A           95 PEGFATRVQVEGPLTALWEGAVRPGHFQGVATVVARLFLLVQPQRAYFGEKDYQQLLVVRRMVRDLGFPVEVVGVPTVRE  174 (276)
T ss_dssp             CTTCCEEEEECSHHHHSTHHHHSTTHHHHHHHHHHHHHHHHCCSEEEEEGGGHHHHHHHHHHHHHHTCCCEEEEECCCBC
T ss_pred             CcCCeEEEEecCCcceEEecCCCCCeecceeehhhHhhcccCCCEEEECCCCCcCHHHHHHHHHHcCCeEEEEecCcEEc
Confidence            233432211013455666676                      8 88987766666666653     344544  43   


Q ss_pred             --CCCCCHHHHH
Q 021802          174 --TEGVSSTDIV  183 (307)
Q Consensus       174 --t~~VSST~Ir  183 (307)
                        ...+|||.|+
T Consensus       175 ~dGlaiSSrnir  186 (276)
T 1v8f_A          175 EDGLALSSRNVY  186 (276)
T ss_dssp             TTSCBCCGGGGG
T ss_pred             CCCCEeEEeEEE
Confidence              2358999986

>3ag6_A Pantothenate synthetase; ATP-dependent enzyme, ATP-binding, nucleotide-binding, pantothenate biosynthesis; HET: PAJ PG4; 1.85A {Staphylococcus aureus} PDB: 3ag5_A* 2x3f_A*

Probab=98.92  E-value=4.1e-10  Score=105.26  Aligned_cols=135  Identities=13%  Similarity=0.153  Sum_probs=93.3

Q ss_pred             hhhcCCCCe-EEEEecccCcCCHHHHHHHHHHHHcCCeEEEEEeCChhhhhcCC---CCCCCHHHHHHHHHHccCccEEE
Q 021802           44 WTRKKKKPV-RVYMDGCFDMMHYGHCNALRQARALGDQLVVGVVSDAEIIANKG---PPVTPLHERMIMVNAVKWVDEVI  119 (307)
Q Consensus        44 ~~~~~~~~~-~V~~~G~FD~lH~GH~~lL~qAk~~gd~LiVgV~sD~~i~~~Kg---~pi~s~eER~~ll~~~k~VD~Vv  119 (307)
                      .++..++.+ -|.++|.   +|.||+.++++|++.++.++|.+..+|.-...+.   +.+.+.+++.++++++ +||.++
T Consensus        17 ~~r~~g~~I~fVpTmG~---lH~GH~~LI~~a~~~a~~vVvsffvnP~qf~~~ed~~~yprtle~d~~ll~~~-GvD~vf   92 (283)
T 3ag6_A           17 AAKRSGTTIGFIPTMGA---LHDGHLTMVRESVSTNDITIVSVFVNPLQFGPNEDFDAYPRQIDKDLELVSEV-GADIVF   92 (283)
T ss_dssp             HHHHTTCCEEEEEECSS---CCHHHHHHHHHHHTTSSEEEEEECCCGGGCCTTSSTTTSCCCHHHHHHHHHHH-TCSEEE
T ss_pred             HHHhcCCcEEEEECCcc---ccHHHHHHHHHHHHhCCEEEEEEeCChhhcCCccccccCCCCHHHHHHHHHhC-CCCEEE
Confidence            444444433 2459997   9999999999999999999999988884322221   4588999999999998 999998


Q ss_pred             EcCCCc--ccHHH--------HHH-HHHhcCcc-------------EEEEcCCCCcCCCCCchHHHHHhC-----CEEEE
Q 021802          120 SDAPYA--ITKDF--------MKK-LFDEYNID-------------YIIHGDDPCVLPDGTDAYELAKKA-----GRYKQ  170 (307)
Q Consensus       120 ~~~py~--~t~df--------le~-ll~~l~~d-------------~VV~GdD~~fg~~g~d~y~~lk~~-----g~v~v  170 (307)
                      . .+|.  .+++|        +.+ +...+++.             .+|.|+|++||.+.......+++.     ..+.+
T Consensus        93 ~-p~~~~myp~~f~~~v~~~~l~~~L~G~~rp~hF~GV~TVV~KLf~iV~p~~~~FG~Kd~qql~~l~~m~~dl~~~V~i  171 (283)
T 3ag6_A           93 H-PAVEDMYPGELGIDVKVGPLADVLEGAKRPGHFDGVVTVVNKLFNIVMPDYAYFGKKDAQQLAIVEQMVKDFNHAVEI  171 (283)
T ss_dssp             C-CCHHHHSCSSCSEEEEECGGGSSTHHHHSTTHHHHHHHHHHHHHHHHCCSEEEEEGGGHHHHHHHHHHHHHTTCCCEE
T ss_pred             e-CCHHHCCCCCceEEEeccccchhhccCCCCCeecchhhHhhhhcEEecCceEEECCCCccCHHHHHHHHHHcCCeEEE
Confidence            8 4431  11223        211 22347888             899999999997766666666653     34443


Q ss_pred             --cCCC-----CCCCHHHHH
Q 021802          171 --IKRT-----EGVSSTDIV  183 (307)
Q Consensus       171 --v~rt-----~~VSST~Ir  183 (307)
                        ++..     ..+|||.+.
T Consensus       172 v~vp~vr~~dGlaiSSrn~y  191 (283)
T 3ag6_A          172 IGIDIVREADGLAKSSRNVY  191 (283)
T ss_dssp             EEECCCBCTTSCBCCGGGGG
T ss_pred             EecCcEEeCCCCEecCCccc
Confidence              4442     358998763

>3nv7_A Phosphopantetheine adenylyltransferase; helicobacter pylori 26695 strain, mutant I4V/N76Y, phosphopa adenylyltransferase; 1.75A {Helicobacter pylori} PDB: 3otw_A*

Probab=98.72  E-value=1.3e-08  Score=87.43  Aligned_cols=39  Identities=23%  Similarity=0.443  Sum_probs=36.5

Q ss_pred             CeEEEEeCcccccCHHHHHHHHHHHhCCCEEEEEEeCcc
Q 021802          249 ARIIYIDGAFDLFHAGHVEILRIARGLGDFLLVGIHNDQ  287 (307)
Q Consensus       249 ~~~v~~~G~FDl~H~GHi~~L~~a~~~g~~liVgv~~D~  287 (307)
                      ++++++.|+||++|.||+.++++|++++|+|+|++.+|.
T Consensus         2 m~i~i~~GsFDPiH~GHl~ii~~A~~~~D~viv~v~~~~   40 (157)
T 3nv7_A            2 QKVGIYPGTFDPVTNGHIDIIHRSSELFEKLIVAVAHSS   40 (157)
T ss_dssp             -CEEEEEECCTTCCHHHHHHHHHHHTTSSEEEEEEECCG
T ss_pred             CEEEEEEEEcCCCCHHHHHHHHHHHHhCCceEEEEccCC
Confidence            368999999999999999999999999999999999885

>3glv_A Lipopolysaccharide core biosynthesis protein; structural GEN PSI, MCSG, protein structure initiative; HET: AMP; 1.99A {Thermoplasma volcanium GSS1}

Probab=98.69  E-value=1.2e-08  Score=85.55  Aligned_cols=42  Identities=36%  Similarity=0.626  Sum_probs=39.4

Q ss_pred             CeEEEEeCcccccCHHHHHHHHHHHhCCCEEEEEEeCccccc
Q 021802          249 ARIIYIDGAFDLFHAGHVEILRIARGLGDFLLVGIHNDQTVR  290 (307)
Q Consensus       249 ~~~v~~~G~FDl~H~GHi~~L~~a~~~g~~liVgv~~D~~v~  290 (307)
                      ++++++.|+||.+|.||+.+|++|++.++.++|+++.|....
T Consensus         2 m~~v~~~G~FD~vH~GH~~li~~a~~~~~~~~v~v~~~~~~~   43 (143)
T 3glv_A            2 MIRVMATGVFDILHLGHIHYLKESKKLGDELVVVVARDSTAR   43 (143)
T ss_dssp             CCEEEEEECCSSCCHHHHHHHHHHHTTSSEEEEEECCHHHHH
T ss_pred             ceEEEEEeecCCCCHHHHHHHHHHHHhCCCcEEEEECCcchh
Confidence            578999999999999999999999999999999999997665

>4f3r_A Phosphopantetheine adenylyltransferase; phosphopantetheine adenylyltranferase; 2.25A {Coxiella burnetii}

Probab=98.65  E-value=1.6e-08  Score=87.05  Aligned_cols=39  Identities=28%  Similarity=0.381  Sum_probs=36.4

Q ss_pred             CeEEEEeCcccccCHHHHHHHHHHHhCCCEEEEEEeCcc
Q 021802          249 ARIIYIDGAFDLFHAGHVEILRIARGLGDFLLVGIHNDQ  287 (307)
Q Consensus       249 ~~~v~~~G~FDl~H~GHi~~L~~a~~~g~~liVgv~~D~  287 (307)
                      +++++++|+||++|.||+.++++|++++|+|+|+++.|.
T Consensus         5 m~i~i~~GsFDPiH~GHl~li~~A~~~~d~viv~v~~~~   43 (162)
T 4f3r_A            5 KPIAIYPGTFDPLTNGHVDIIERALPLFNKIIVACAPTS   43 (162)
T ss_dssp             CCEEEEEECCTTCCHHHHHHHHHHGGGCSEEEEEECCC-
T ss_pred             eEEEEEEEEcCCCCHHHHHHHHHHHHHCCcEEEEEecCC
Confidence            478999999999999999999999999999999999875

>3cov_A Pantothenate synthetase; pantothenate biosynthesis, enzym ligase, drug design, ATP-binding, magnesium, metal-binding; 1.50A {Mycobacterium tuberculosis} SCOP: c.26.1.4 PDB: 3cow_A* 3coy_A* 3coz_A* 3imc_A* 3ime_A* 3img_A* 3iob_A* 3ioc_A* 3iod_A* 3ioe_A* 3iub_A* 3iue_A* 3ivc_A* 3ivg_A* 3ivx_A* 2a84_A* 1n2b_A* 1n2e_A* 1n2g_A* 1n2h_A* ...

Probab=98.61  E-value=5.3e-09  Score=98.49  Aligned_cols=126  Identities=13%  Similarity=0.124  Sum_probs=83.6

Q ss_pred             EEEecccCcCCHHHHHHHHHHHH-cCCeEEEEEeCChhhhhcCC---CCCCCHHHHHHHHHHccCccEEEEcCCCc--cc
Q 021802           54 VYMDGCFDMMHYGHCNALRQARA-LGDQLVVGVVSDAEIIANKG---PPVTPLHERMIMVNAVKWVDEVISDAPYA--IT  127 (307)
Q Consensus        54 V~~~G~FD~lH~GH~~lL~qAk~-~gd~LiVgV~sD~~i~~~Kg---~pi~s~eER~~ll~~~k~VD~Vv~~~py~--~t  127 (307)
                      |.+..++..+|.||+.|+++|++ .++.++|.+..+|.-...+.   +.+.+.+++.++++++ +||.++. .+|+  .+
T Consensus        35 vg~VpTmG~LH~GH~sLI~~A~~~~a~~vVvSffvnP~qF~~~ed~~~yprtle~d~~lL~~~-GVD~vf~-p~~~~myP  112 (301)
T 3cov_A           35 VMLVPTMGALHEGHLALVRAAKRVPGSVVVVSIFVNPMQFGAGGDLDAYPRTPDDDLAQLRAE-GVEIAFT-PTTAAMYP  112 (301)
T ss_dssp             EEEEEECSCCCHHHHHHHHHHHTSTTEEEEEEECCCGGGCCSSSHHHHSCCCHHHHHHHHHHT-TCCEEEC-CCHHHHCT
T ss_pred             EEEEecCCcccHHHHHHHHHHHHhcCCEEEEEEcCChhhcCCccccccCCCCHHHHHHHHHhC-CCCEEEe-CCHHHCCC
Confidence            44444444499999999999999 89989999988874322222   3588999999999998 9999988 4442  12


Q ss_pred             HHHHHHHHHhcCccEEEEcC-----------------------CCCcCCCCCchHHHHHhC-----CEEEE--cCCC---
Q 021802          128 KDFMKKLFDEYNIDYIIHGD-----------------------DPCVLPDGTDAYELAKKA-----GRYKQ--IKRT---  174 (307)
Q Consensus       128 ~dfle~ll~~l~~d~VV~Gd-----------------------D~~fg~~g~d~y~~lk~~-----g~v~v--v~rt---  174 (307)
                      ++|...+.- -++..+++|.                       |+.||.+.......+++.     ..+.+  ++..   
T Consensus       113 ~~f~~~v~~-~~~~~vl~G~~RPghF~GV~TVV~KLfniv~P~~a~FG~Kd~qql~~lr~mv~dl~~~V~iv~vp~vRe~  191 (301)
T 3cov_A          113 DGLRTTVQP-GPLAAELEGGPRPTHFAGVLTVVLKLLQIVRPDRVFFGEKDYQQLVLIRQLVADFNLDVAVVGVPTVREA  191 (301)
T ss_dssp             TCSCSEEEC-CGGGGSGGGSSCTTHHHHHHHHHHHHHHHHCCSEEEEETTSHHHHHHHHHHHHHTTCCCEEEEECCCBCT
T ss_pred             CCceEEEec-CCcceeeecCCCCChhhhhhHHHHHHhhccCCCeEEECCCcccCHHHHHHHHHHcCCeEEEEeeCcEEeC
Confidence            233321111 1345667777                       899997766666666653     23443  4432   


Q ss_pred             --CCCCHHHH
Q 021802          175 --EGVSSTDI  182 (307)
Q Consensus       175 --~~VSST~I  182 (307)
                        ..+|||..
T Consensus       192 dGlaiSSrN~  201 (301)
T 3cov_A          192 DGLAMSSRNR  201 (301)
T ss_dssp             TSCBCCTTGG
T ss_pred             CCCEEEeccc
Confidence              24888764

>2b7l_A Glycerol-3-phosphate cytidylyltransferase; rossmann fold; 3.00A {Staphylococcus aureus}

Probab=98.60  E-value=4.2e-08  Score=80.39  Aligned_cols=39  Identities=41%  Similarity=0.837  Sum_probs=36.9

Q ss_pred             eEEEEeCcccccCHHHHHHHHHHHhCCCEEEEEEeCccc
Q 021802          250 RIIYIDGAFDLFHAGHVEILRIARGLGDFLLVGIHNDQT  288 (307)
Q Consensus       250 ~~v~~~G~FDl~H~GHi~~L~~a~~~g~~liVgv~~D~~  288 (307)
                      +++++.|+||.+|.||+.++++|++.++.++|+++.|..
T Consensus         2 ~~~~~~G~FDp~H~GH~~li~~a~~~~~~~~v~v~~~~~   40 (132)
T 2b7l_A            2 KRVITYGTYDLLHYGHIELLRRAREMGDYLIVALSTDEF   40 (132)
T ss_dssp             CEEEEEECCCSCCHHHHHHHHHHHHTSSEEEEEEECHHH
T ss_pred             eEEEEeeecCcCCHHHHHHHHHHHHhCCcEEEEEECCHH
Confidence            679999999999999999999999999999999999974

>1coz_A Protein (glycerol-3-phosphate cytidylyltransferase); HET: CTP; 2.00A {Bacillus subtilis} SCOP: c.26.1.2 PDB: 1n1d_A*

Probab=98.59  E-value=4.5e-08  Score=79.81  Aligned_cols=38  Identities=42%  Similarity=0.820  Sum_probs=36.4

Q ss_pred             eEEEEeCcccccCHHHHHHHHHHHhCCCEEEEEEeCcc
Q 021802          250 RIIYIDGAFDLFHAGHVEILRIARGLGDFLLVGIHNDQ  287 (307)
Q Consensus       250 ~~v~~~G~FDl~H~GHi~~L~~a~~~g~~liVgv~~D~  287 (307)
                      +++++.|+||++|.||+.++++|++.+|.++|+++.|.
T Consensus         2 ~~~~~~G~FDp~H~GH~~li~~a~~~~d~~~v~v~~~~   39 (129)
T 1coz_A            2 KKVITYGTFDLLHWGHIKLLERAKQLGDYLVVAISTDE   39 (129)
T ss_dssp             CEEEEEECCCSCCHHHHHHHHHHHTTSSEEEEEEECHH
T ss_pred             cEEEEEEeCCCCCHHHHHHHHHHHHhCCCeEEEEECCH
Confidence            67999999999999999999999999999999999986

>1jhd_A Sulfate adenylyltransferase; sulfurylase, APS, chemoautotroph, bromide; 1.70A {Sulfur-oxidizing endosymbiont ofriftia pachyptila} SCOP: b.122.1.3 c.26.1.5

Probab=98.51  E-value=1.2e-06  Score=85.42  Aligned_cols=133  Identities=17%  Similarity=0.096  Sum_probs=86.3

Q ss_pred             EEEEecccCcCCHHHHHHHHHHHHcC--CeEEEEEeCChhhhhcCCCCCCCHHHHHHHHHHc-cCc---cEEEE-cCCCc
Q 021802           53 RVYMDGCFDMMHYGHCNALRQARALG--DQLVVGVVSDAEIIANKGPPVTPLHERMIMVNAV-KWV---DEVIS-DAPYA  125 (307)
Q Consensus        53 ~V~~~G~FD~lH~GH~~lL~qAk~~g--d~LiVgV~sD~~i~~~Kg~pi~s~eER~~ll~~~-k~V---D~Vv~-~~py~  125 (307)
                      +|++.|+||++|.||..++++|.+..  |.|++-..-.+    .| +--.+.+.|+++++.+ +..   +.+++ ..|+.
T Consensus       194 ~VvafqTrNPiHrgH~~l~~~Ale~~~~D~vll~P~~g~----~K-~~di~~~~R~~~~~~~~~~~~p~~~v~l~~~p~~  268 (396)
T 1jhd_A          194 KVVAFQTRNPMHRAHEELCRMAMESLDADGVVVHMLLGK----LK-KGDIPAPVRDAAIRTMAEVYFPPNTVMVTGYGFD  268 (396)
T ss_dssp             SEEEEEESSCCCHHHHHHHHHHHHHHTCSEEEEEEEECC----CC-TTCCCHHHHHHHHHHHHHHHSCTTCEEEEEEECC
T ss_pred             eEEEeccCCCCchHHHHHHHHHHHHcCCCeEEEEECCCC----CC-CCCCCHHHHHHHHHHHHHhcCCCcceEEEechHH
Confidence            48889999999999999999999986  77664333222    23 4568899999998873 221   22222 12222


Q ss_pred             -----ccHHHHHHHH-HhcCccEEEEcCCCC---cCCCCCchHHHHHhC-------CEEEEcCCC---------------
Q 021802          126 -----ITKDFMKKLF-DEYNIDYIIHGDDPC---VLPDGTDAYELAKKA-------GRYKQIKRT---------------  174 (307)
Q Consensus       126 -----~t~dfle~ll-~~l~~d~VV~GdD~~---fg~~g~d~y~~lk~~-------g~v~vv~rt---------------  174 (307)
                           .++..+..++ +.++|.+.++|.|..   -.+++.+..++++..       .++..+++.               
T Consensus       269 m~~aGPreailhaiirkn~G~t~fIVGrDhag~~~~y~~~~aq~il~~~~~~~~l~i~iv~~~~~~Y~~~~~~~~~~~~~  348 (396)
T 1jhd_A          269 MLYAGPREAVLHAYFRQNMGATHFIIGRDHAGVGDYYGAFDAQTIFDDEVPEGAMEIEIFRADHTAYSKKLNKIVMMRDV  348 (396)
T ss_dssp             CCCCTHHHHHHHHHHHHHTTCSEEEECTTTTCCTTCSCTTHHHHHHHHTSCTTSCSCEEEECCCEEEETTTTEEEEGGGC
T ss_pred             hhcCCchHHHHHHHHHHcCCCcEEEECCCCCCccccCCcchHHHHHHhcccccccceeEEecccceecCCCCeEEEcccc
Confidence                 1233344433 458999999999984   234555555666641       344444430               


Q ss_pred             --------CCCCHHHHHHHHHhhh
Q 021802          175 --------EGVSSTDIVGRMLLCV  190 (307)
Q Consensus       175 --------~~VSST~Ir~rIl~~~  190 (307)
                              -.||||+||+++.+..
T Consensus       349 p~~~~~~~~~ISgT~IR~~L~~G~  372 (396)
T 1jhd_A          349 PDHTKEDFVLLSGTKVREMLGQGI  372 (396)
T ss_dssp             TTCCGGGEECCCHHHHHHHHHTTC
T ss_pred             CcccCCCccccCHHHHHHHHHCCC
Confidence                    1489999999987663

>1v47_A ATP sulfurylase; product binding complex, zinc, riken structural genomics/proteomics initiative, RSGI, structural genomics, transferase; HET: ADX; 2.49A {Thermus thermophilus} SCOP: b.122.1.3 c.26.1.5

Probab=98.49  E-value=2.3e-06  Score=82.14  Aligned_cols=146  Identities=14%  Similarity=0.123  Sum_probs=91.7

Q ss_pred             hHHhHhhhcCCCCeEEEEecccCcCCHHHHHHHHHHHHcCCeEEEEEeCChhhhhcCCCCCCCHHHHHHHHHHc-cCc--
Q 021802           39 DRWLQWTRKKKKPVRVYMDGCFDMMHYGHCNALRQARALGDQLVVGVVSDAEIIANKGPPVTPLHERMIMVNAV-KWV--  115 (307)
Q Consensus        39 ~~~~~~~~~~~~~~~V~~~G~FD~lH~GH~~lL~qAk~~gd~LiVgV~sD~~i~~~Kg~pi~s~eER~~ll~~~-k~V--  115 (307)
                      .++...+++.+-. +|++.|+||++|.||..+.++|.+..|.+++-..-.+    .| +--.+.+.|+++++.+ +..  
T Consensus       144 ~e~r~~f~~~gw~-~VvafqTrNPiHrgH~~l~~~ale~~d~vll~P~~g~----~K-~~d~~~~~R~~~~~~~i~~~~p  217 (349)
T 1v47_A          144 EEVRAFFRQRGWR-KVVAFQTRNAPHRAHEYLIRLGLELADGVLVHPILGA----KK-PDDFPTEVIVEAYQALIRDFLP  217 (349)
T ss_dssp             HHHHHHHHHTTCC-SEEEEEESSCCCHHHHHHHHHHHHHSSEEEEEEBCSC----CC-TTSCCHHHHHHHHHHHHHHHSC
T ss_pred             HHHHHHHHhcCCC-eEEEeecCCCCchHHHHHHHHHHHhCCcEEEEECCCC----CC-CCCCCHHHHHHHHHHHHhhcCC
Confidence            3344444444444 4888999999999999999999999888776444332    23 4568899999998873 222  


Q ss_pred             -cEEEE-cCCCcc-----cHHHHHHHH-HhcCccEEEEcCCCC---cCCCCCchHHHHHhC----CEEEEcCC-------
Q 021802          116 -DEVIS-DAPYAI-----TKDFMKKLF-DEYNIDYIIHGDDPC---VLPDGTDAYELAKKA----GRYKQIKR-------  173 (307)
Q Consensus       116 -D~Vv~-~~py~~-----t~dfle~ll-~~l~~d~VV~GdD~~---fg~~g~d~y~~lk~~----g~v~vv~r-------  173 (307)
                       +.+++ ..|+..     ++..+..++ +.++|.+.++|.|..   -.+++.+..++++..    .++..+++       
T Consensus       218 ~~~~~l~~~p~~m~~aGPreailhaiirkn~G~t~fIVGrDhag~~~~y~~~~aq~i~~~~~~l~i~~v~~~~~~Y~~~~  297 (349)
T 1v47_A          218 QERVAFFGLATPMRYAGPKEAVFHALVRKNFGATHFLVGRDHAGVGDFYDPYAAHRIFDRLPPLGIEIVKVGAVFHCPLC  297 (349)
T ss_dssp             GGGEEECCBCSCCCCCTHHHHHHHHHHHHHTTCSEEEECTTTTCSTTCSCTTHHHHGGGGSCCCSSEEEECCCEEEETTT
T ss_pred             CcceEEEechHHhhcCCcHHHHHHHHHHHcCCCcEEEECcCCCCcccccCcccHHHHHHhhhhcCceEEeccccEEcccC
Confidence             33433 133322     234455544 448999999999975   223444444444443    13333222       


Q ss_pred             ----------------CCCCCHHHHHHHHHhhh
Q 021802          174 ----------------TEGVSSTDIVGRMLLCV  190 (307)
Q Consensus       174 ----------------t~~VSST~Ir~rIl~~~  190 (307)
                                      .-.||+|+||+++.+..
T Consensus       298 ~~~~~~~~~p~~~~~~~~~ISgT~iR~~L~~G~  330 (349)
T 1v47_A          298 GGIASERTCPEGHREKRTAISMTKVRALLREGK  330 (349)
T ss_dssp             TEEEETTTSCGGGGGGCEECCHHHHHHHHHTTC
T ss_pred             CceEEccccCccCCCcccccCHHHHHHHHHCcC
Confidence                            01489999999987653

>3nbk_A Phosphopantetheine adenylyltransferase; PPAT, PHP; HET: PNS; 1.58A {Mycobacterium tuberculosis} PDB: 3nba_A* 3pnb_A* 4e1a_A 3lcj_A 3rba_A* 1tfu_A* 3rff_A 3rhs_A* 3uc5_A*

Probab=98.49  E-value=1e-07  Score=83.46  Aligned_cols=42  Identities=29%  Similarity=0.338  Sum_probs=37.6

Q ss_pred             CCCCeEEEEeCcccccCHHHHHHHHHHHhCCCEEEEEEeCcc
Q 021802          246 GPDARIIYIDGAFDLFHAGHVEILRIARGLGDFLLVGIHNDQ  287 (307)
Q Consensus       246 ~~~~~~v~~~G~FDl~H~GHi~~L~~a~~~g~~liVgv~~D~  287 (307)
                      .+++++++..|+||++|.||+.++++|++++|+|+|++..+.
T Consensus        18 ~~~mki~i~~GsFDPiH~GHl~ii~~A~~~~D~Viv~v~~np   59 (177)
T 3nbk_A           18 GSHMTGAVCPGSFDPVTLGHVDIFERAAAQFDEVVVAILVNP   59 (177)
T ss_dssp             --CCCEEEEEECCTTCCHHHHHHHHHHHHHSSEEEEEECCCT
T ss_pred             CCCCEEEEEEEeeCCCCHHHHHHHHHHHHHCCEEEEEEcCCC
Confidence            345689999999999999999999999999999999999774

>3do8_A Phosphopantetheine adenylyltransferase; protein with unknown function, structural genomics, MCSG, PSI-2, protein structure initiative; 1.60A {Archaeoglobus fulgidus}

Probab=98.46  E-value=6.3e-08  Score=82.12  Aligned_cols=48  Identities=25%  Similarity=0.559  Sum_probs=40.2

Q ss_pred             EEEEeCcccccCHHHHHHHHHHHhCC-CEEEEEEeCcccccc-cCCCccc
Q 021802          251 IIYIDGAFDLFHAGHVEILRIARGLG-DFLLVGIHNDQTVRL-KNPSVSF  298 (307)
Q Consensus       251 ~v~~~G~FDl~H~GHi~~L~~a~~~g-~~liVgv~~D~~v~~-~~~~~~~  298 (307)
                      .+++.|+||++|.||+.++++|++++ |.|+|++++|...++ .++..|+
T Consensus         2 ~~i~gGtFDPiH~GHl~l~~~a~~~~~d~viv~v~~~~~~~k~~~~~~~~   51 (148)
T 3do8_A            2 KVALGGTFEPLHEGHKKLIDVAIKLGGRDITIGVTSDRMARARIRSVLPF   51 (148)
T ss_dssp             CEEEEECCSSCCHHHHHHHHHHHHHHTTCEEEEEECHHHHHHHSCCCSCH
T ss_pred             EEEEEeeCCCCCHHHHHHHHHHHHhCCCEEEEEECCCccccccCCCCCCH
Confidence            37899999999999999999999987 899999999987633 2455553

>1vlh_A Phosphopantetheine adenylyltransferase; TM0741, structural G JCSG, protein structure initiative, PSI, joint center for S genomics; HET: PNS; 2.20A {Thermotoga maritima} SCOP: c.26.1.3

Probab=98.44  E-value=2.1e-07  Score=80.45  Aligned_cols=39  Identities=28%  Similarity=0.377  Sum_probs=36.1

Q ss_pred             CeEEEEeCcccccCHHHHHHHHHHHhCCCEEEEEEeCcc
Q 021802          249 ARIIYIDGAFDLFHAGHVEILRIARGLGDFLLVGIHNDQ  287 (307)
Q Consensus       249 ~~~v~~~G~FDl~H~GHi~~L~~a~~~g~~liVgv~~D~  287 (307)
                      .-++++.|+||++|.||+.++++|++++|+|+|+++++.
T Consensus        12 ~~i~i~~GsFdP~H~GHl~l~~~A~~~~D~viv~v~~~~   50 (173)
T 1vlh_A           12 HMKAVYPGSFDPITLGHVDIIKRALSIFDELVVLVTENP   50 (173)
T ss_dssp             -CEEEEEECCTTCCHHHHHHHHHHHTTCSEEEEEEECCT
T ss_pred             ceEEEEEEEECcCcHHHHHHHHHHHHHCCEEEEEEeCCC
Confidence            357999999999999999999999999999999999974

>3nd5_A Phosphopantetheine adenylyltransferase; PPAT, coenzyme A BIO pathway; 2.30A {Enterococcus faecalis} SCOP: c.26.1.0 PDB: 3nd6_A* 3nd7_A*

Probab=98.42  E-value=2.1e-07  Score=80.82  Aligned_cols=39  Identities=23%  Similarity=0.499  Sum_probs=35.2

Q ss_pred             CeEEEEeCcccccCHHHHHHHHHHHhCCCEEEEEEeCcc
Q 021802          249 ARIIYIDGAFDLFHAGHVEILRIARGLGDFLLVGIHNDQ  287 (307)
Q Consensus       249 ~~~v~~~G~FDl~H~GHi~~L~~a~~~g~~liVgv~~D~  287 (307)
                      +++++++|+||++|.||+.++++|++.+|+|+|++..+.
T Consensus         2 m~i~i~~GsFDPiH~GHl~i~~~a~~~~D~viv~v~~~~   40 (171)
T 3nd5_A            2 RKIALFPGSFDPMTNGHLNLIERSAKLFDEVIIGVFINT   40 (171)
T ss_dssp             CCEEEEEECCTTCCHHHHHHHHHHHTTCSEEEEEEEC--
T ss_pred             CeEEEEEEEccccCHHHHHHHHHHHHHCCCeEEEEecCC
Confidence            378999999999999999999999999999999998764

>3k9w_A Phosphopantetheine adenylyltransferase; niaid, ssgcid, seattle structural genomics center for infect disease, coenzyme A, COA; HET: 4PS ADE PG4; 1.60A {Burkholderia pseudomallei} PDB: 3ikz_A* 3pxu_A*

Probab=98.40  E-value=2.4e-07  Score=81.54  Aligned_cols=39  Identities=28%  Similarity=0.514  Sum_probs=37.0

Q ss_pred             CeEEEEeCcccccCHHHHHHHHHHHhCCCEEEEEEeCcc
Q 021802          249 ARIIYIDGAFDLFHAGHVEILRIARGLGDFLLVGIHNDQ  287 (307)
Q Consensus       249 ~~~v~~~G~FDl~H~GHi~~L~~a~~~g~~liVgv~~D~  287 (307)
                      ++++++.|+||++|.||+.++++|++.+|+|+|++.+|.
T Consensus        22 mki~v~~GsFDpiH~GHl~li~~A~~~~d~viv~v~~~p   60 (187)
T 3k9w_A           22 MVVAVYPGTFDPLTRGHEDLVRRASSIFDTLVVGVADSR   60 (187)
T ss_dssp             CCEEEEEECCTTCCHHHHHHHHHHHHHSSEEEEEEECCG
T ss_pred             cEEEEEEEeCCcCcHHHHHHHHHHHHHCCcEEEEEecCC
Confidence            589999999999999999999999999999999999874

>3f3m_A Phosphopantetheine adenylyltransferase; PPAT, coenzyme A BIO pathway, coenzyme A biosynthesis, nucleotidyltransferase; HET: PPS; 2.40A {Staphylococcus aureus} SCOP: c.26.1.0

Probab=98.38  E-value=2.4e-07  Score=80.18  Aligned_cols=39  Identities=26%  Similarity=0.369  Sum_probs=35.6

Q ss_pred             CeEEEEeCcccccCHHHHHHHHHHHhCCCEEEEEEeCcc
Q 021802          249 ARIIYIDGAFDLFHAGHVEILRIARGLGDFLLVGIHNDQ  287 (307)
Q Consensus       249 ~~~v~~~G~FDl~H~GHi~~L~~a~~~g~~liVgv~~D~  287 (307)
                      ++++++.|+||++|.||+.++++|++.+|.|+|+++.+.
T Consensus         3 ~ki~i~~GsFDPiH~GHl~i~~~a~~~~d~viv~v~~~p   41 (168)
T 3f3m_A            3 HTIAVIPGSFDPITYGHLDIIERSTDRFDEIHVCVLKNS   41 (168)
T ss_dssp             CCEEEEEECCTTCCHHHHHHHHHHGGGSSEEEEEECC--
T ss_pred             ceEEEEEEEcCcCCHHHHHHHHHHHHhCCEEEEEEcCCC
Confidence            579999999999999999999999999999999999764

>1qjc_A Phosphopantetheine adenylyltransferase; coenzyme A biosynthesis, nucleotidyltransferase; HET: PNS; 1.64A {Escherichia coli} SCOP: c.26.1.3 PDB: 1h1t_A* 1gn8_A* 1b6t_A* 3l92_A* 3l93_A

Probab=98.20  E-value=1.4e-06  Score=73.04  Aligned_cols=39  Identities=23%  Similarity=0.422  Sum_probs=35.9

Q ss_pred             CeEEEEeCcccccCHHHHHHHHHHHhCCCEEEEEEeCcc
Q 021802          249 ARIIYIDGAFDLFHAGHVEILRIARGLGDFLLVGIHNDQ  287 (307)
Q Consensus       249 ~~~v~~~G~FDl~H~GHi~~L~~a~~~g~~liVgv~~D~  287 (307)
                      ++++++.|+||++|.||+.++++|++.+|.+++.++.|.
T Consensus         1 ~~i~i~~GsFDpvH~GH~~l~~~a~~~~d~v~v~~~~~p   39 (158)
T 1qjc_A            1 QKRAIYPGTFDPITNGHIDIVTRATQMFDHVILAIAASP   39 (158)
T ss_dssp             -CEEEEEECCTTCCHHHHHHHHHHHTTSSEEEEEEESCC
T ss_pred             CCEEEEEecCCCCCHHHHHHHHHHHHhCCEEEEEECCCC
Confidence            468999999999999999999999999999999999874

>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1

Probab=98.12  E-value=2e-06  Score=81.70  Aligned_cols=41  Identities=27%  Similarity=0.269  Sum_probs=38.4

Q ss_pred             CeEEEEeCcccccCHHHHHHHHHHHhCCCEEEEEEeCcccc
Q 021802          249 ARIIYIDGAFDLFHAGHVEILRIARGLGDFLLVGIHNDQTV  289 (307)
Q Consensus       249 ~~~v~~~G~FDl~H~GHi~~L~~a~~~g~~liVgv~~D~~v  289 (307)
                      ++++++.|+||++|.||+.++++|++.+|+|+|++.++..-
T Consensus         2 ~~~~i~~GtFdP~h~GHl~~~~~a~~~~d~v~v~~~~~~~~   42 (365)
T 1lw7_A            2 KKVGVIFGKFYPVHTGHINMIYEAFSKVDELHVIVCSDTVR   42 (365)
T ss_dssp             CCEEEEEECCSSCCHHHHHHHHHHHTTCSEEEEEEEECHHH
T ss_pred             CcEEEEEEeeCCCCHHHHHHHHHHHHHCCEEEEEECCCCcc
Confidence            57899999999999999999999999999999999999764

>2qjt_B Nicotinamide-nucleotide adenylyltransferase; two individual domains, hydrolase; HET: AMP; 2.30A {Francisella tularensis} PDB: 2r5w_B

Probab=98.09  E-value=1.9e-06  Score=80.69  Aligned_cols=41  Identities=24%  Similarity=0.298  Sum_probs=37.6

Q ss_pred             CeEEEEeCcccccCHHHHHHHHHHHhCCCEEEEEEeCcccc
Q 021802          249 ARIIYIDGAFDLFHAGHVEILRIARGLGDFLLVGIHNDQTV  289 (307)
Q Consensus       249 ~~~v~~~G~FDl~H~GHi~~L~~a~~~g~~liVgv~~D~~v  289 (307)
                      ++++++.|+||++|.||+.++++|++.+|.|+|+|.++..-
T Consensus         7 ~~~~i~~GtFdP~h~GHl~~~~~a~~~~d~~~~~v~~~~~~   47 (352)
T 2qjt_B            7 YDISVFIGRFQPFHKGHLHNIIIALQNSKKVIINIGSCFNT   47 (352)
T ss_dssp             EEEEEEEECCTTCCHHHHHHHHHHHHSEEEEEEEEEEESCC
T ss_pred             ccEEEEEEecCCCChHHHHHHHHHHHhCCcEEEEECCCCCC
Confidence            47899999999999999999999999999999999987643

>1ej2_A Nicotinamide mononucleotide adenylyltransferase; dinucleotide binding fold, structural genomics, PSI; HET: NAD; 1.90A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: c.26.1.3 PDB: 1m8g_A* 1hyb_A* 1m8j_A* 1m8f_A* 1m8k_A*

Probab=97.99  E-value=5.5e-06  Score=71.54  Aligned_cols=37  Identities=22%  Similarity=0.315  Sum_probs=33.9

Q ss_pred             eEEEEeCcccccCHHHHHHHHHHHhCCCEEEEEEeCc
Q 021802          250 RIIYIDGAFDLFHAGHVEILRIARGLGDFLLVGIHND  286 (307)
Q Consensus       250 ~~v~~~G~FDl~H~GHi~~L~~a~~~g~~liVgv~~D  286 (307)
                      +++++.|+||.+|.||+.++++|++.+|.++|++.++
T Consensus         4 ~~~i~~G~Fdp~H~GH~~l~~~a~~~~d~v~v~v~~~   40 (181)
T 1ej2_A            4 MRGLLVGRMQPFHRGHLQVIKSILEEVDELIICIGSA   40 (181)
T ss_dssp             CEEEEEECCTTCCHHHHHHHHHHTTTCSEEEEEECST
T ss_pred             eEEEEEEEcCCcCHHHHHHHHHHHHhCCeeEEEECCC
Confidence            5789999999999999999999999999999999444

>1o6b_A Phosphopantetheine adenylyltransferase; structural genomics; HET: ADP; 2.20A {Bacillus subtilis} SCOP: c.26.1.3

Probab=97.96  E-value=5.7e-06  Score=70.36  Aligned_cols=38  Identities=26%  Similarity=0.422  Sum_probs=34.8

Q ss_pred             CeEEEEeCcccccCHHHHHHHHHHHhCCCEEEEEEeCc
Q 021802          249 ARIIYIDGAFDLFHAGHVEILRIARGLGDFLLVGIHND  286 (307)
Q Consensus       249 ~~~v~~~G~FDl~H~GHi~~L~~a~~~g~~liVgv~~D  286 (307)
                      ++++++.|+||.+|.||+.++++|++.+|.++|.+..+
T Consensus         2 ~~i~i~~GsFDpvH~GH~~li~~a~~~~d~v~v~~~~~   39 (169)
T 1o6b_A            2 ASIAVCPGSFDPVTYGHLDIIKRGAHIFEQVYVCVLNN   39 (169)
T ss_dssp             CCEEEEEECCTTCCHHHHHHHHHHHHHSSEEEEEECCC
T ss_pred             CcEEEEEEeeCCCCHHHHHHHHHHHHhCCEEEEEECCC
Confidence            36899999999999999999999999999999988865

>1f9a_A Hypothetical protein MJ0541; alpha/beta, transferase, structural genomics; HET: ATP; 2.00A {Methanocaldococcus jannaschii} SCOP: c.26.1.3

Probab=97.94  E-value=7.8e-06  Score=69.77  Aligned_cols=36  Identities=31%  Similarity=0.550  Sum_probs=33.1

Q ss_pred             EEEEeCcccccCHHHHHHHHHHHhCCCEEEEEE-eCc
Q 021802          251 IIYIDGAFDLFHAGHVEILRIARGLGDFLLVGI-HND  286 (307)
Q Consensus       251 ~v~~~G~FDl~H~GHi~~L~~a~~~g~~liVgv-~~D  286 (307)
                      ++++.|+||.+|.||+.++++|++.+|.++|++ +.+
T Consensus         2 i~i~~GsFdp~H~GH~~l~~~a~~~~d~v~v~v~~~~   38 (168)
T 1f9a_A            2 RGFIIGRFQPFHKGHLEVIKKIAEEVDEIIIGIGSAQ   38 (168)
T ss_dssp             EEEEEECCTTCCHHHHHHHHHHTTTCSEEEEEECSTT
T ss_pred             EEEEEEecCCcCHHHHHHHHHHHHhCCeEEEEEcCCC
Confidence            588999999999999999999999999999999 544

>2qtr_A Nicotinate (nicotinamide) nucleotide adenylyltran; NAD, nucleotidyltransferase, pyridine nucleotide biosynthesi transferase; HET: NXX; 1.70A {Bacillus anthracis} PDB: 3dv2_A 3mla_A* 3hfj_A* 3mlb_A* 3mmx_A* 3e27_A* 2qtn_A* 2qtm_A*

Probab=97.87  E-value=7e-06  Score=70.72  Aligned_cols=41  Identities=22%  Similarity=0.115  Sum_probs=35.5

Q ss_pred             CeEEEEeCcccccCHHHHHHHHHHHhCC--CEEEEEEeCcccc
Q 021802          249 ARIIYIDGAFDLFHAGHVEILRIARGLG--DFLLVGIHNDQTV  289 (307)
Q Consensus       249 ~~~v~~~G~FDl~H~GHi~~L~~a~~~g--~~liVgv~~D~~v  289 (307)
                      ++++++.|+||.+|.||+.++++|++.+  |.+++.++.+...
T Consensus         2 ~~i~i~~GsFDPvH~GH~~li~~a~~~~~~d~v~~~~~~~~~~   44 (189)
T 2qtr_A            2 RKIGIIGGTFDPPHYGHLLIANEVYHALNLEEVWFLPNQIPPH   44 (189)
T ss_dssp             CEEEEEEECCSSCCHHHHC-CHHHHHHTTCSEEEEEECSSCTT
T ss_pred             CeEEEEecCcccccHHHHHHHHHHHHHcCCCEEEEEECCCCCC
Confidence            3789999999999999999999999887  9999999977633

>1od6_A PPAT, phosphopantetheine adenylyltransferase; coenzyme A biosynthesis, nucleotidyltransferase; HET: PNS; 1.5A {Thermus thermophilus} SCOP: c.26.1.3

Probab=97.87  E-value=1.1e-05  Score=67.61  Aligned_cols=36  Identities=22%  Similarity=0.456  Sum_probs=33.0

Q ss_pred             EEEeCcccccCHHHHHHHHHHHhCCCEEEEEEeCcc
Q 021802          252 IYIDGAFDLFHAGHVEILRIARGLGDFLLVGIHNDQ  287 (307)
Q Consensus       252 v~~~G~FDl~H~GHi~~L~~a~~~g~~liVgv~~D~  287 (307)
                      +++.|+||.+|.||+.++++|++.+|.++|.++.+.
T Consensus         3 ~v~~GsFdp~H~GH~~l~~~a~~~~d~v~v~~~~~p   38 (160)
T 1od6_A            3 VVYPGSFDPLTNGHLDVIQRASRLFEKVTVAVLENP   38 (160)
T ss_dssp             EEEEECCTTCCHHHHHHHHHHHHHSSEEEEEEECC-
T ss_pred             EEEEeeeCCCCHHHHHHHHHHHHHCCEEEEEEcCCC
Confidence            788999999999999999999999999999998664

>1kam_A Deamido-NAD(+), nicotinate-nucleotide adenylyltransferase; rossman fold; 2.10A {Bacillus subtilis} SCOP: c.26.1.3 PDB: 1kaq_A*

Probab=97.81  E-value=1.5e-05  Score=69.33  Aligned_cols=39  Identities=21%  Similarity=0.163  Sum_probs=35.3

Q ss_pred             CeEEEEeCcccccCHHHHHHHHHHHhCC--CEEEEEEeCcc
Q 021802          249 ARIIYIDGAFDLFHAGHVEILRIARGLG--DFLLVGIHNDQ  287 (307)
Q Consensus       249 ~~~v~~~G~FDl~H~GHi~~L~~a~~~g--~~liVgv~~D~  287 (307)
                      ++++++.|+||.+|.||+.++++|++.+  |.++++++.+.
T Consensus         7 ~~~~v~~GsFdp~H~GH~~l~~~a~~~~~~d~v~~~~~~~~   47 (194)
T 1kam_A            7 KKIGIFGGTFDPPHNGHLLMANEVLYQAGLDEIWFMPNQIP   47 (194)
T ss_dssp             CEEEEEEECCSSCCHHHHHHHHHHHHHTTCSEEEEEECCCC
T ss_pred             cEEEEEEeccccccHHHHHHHHHHHHHhCCCEEEEEECCCC
Confidence            3789999999999999999999999887  89999998775

>2ejc_A Pantoate--beta-alanine ligase; X-RAY diffraction, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.40A {Thermotoga maritima}

Probab=97.78  E-value=1.5e-05  Score=74.30  Aligned_cols=42  Identities=26%  Similarity=0.444  Sum_probs=36.7

Q ss_pred             CCeEEEEeCcccccCHHHHHHHHHHHhCCCEEEEEE--eCccccc
Q 021802          248 DARIIYIDGAFDLFHAGHVEILRIARGLGDFLLVGI--HNDQTVR  290 (307)
Q Consensus       248 ~~~~v~~~G~FDl~H~GHi~~L~~a~~~g~~liVgv--~~D~~v~  290 (307)
                      +++++++ |+||.+|.||+.++++|++.+|.+||++  |+++...
T Consensus        21 g~~V~~v-gtfdgLH~GH~sLI~~A~~~ad~vVVSffvnP~qf~~   64 (280)
T 2ejc_A           21 KKTIGFV-PTMGYLHEGHLSLVRRARAENDVVVVSIFVNPTQFGP   64 (280)
T ss_dssp             TCCEEEE-EECSCCCHHHHHHHHHHHHHSSEEEEEECCCGGGCCT
T ss_pred             CCEEEEE-cCCccccHHHHHHHHHHHHhCCEEEEEEeCChHHhcC
Confidence            4678888 8999999999999999999999999999  5555543

>1yum_A 'probable nicotinate-nucleotide adenylyltransferase; alpha/beta domain; HET: CIT NCN; 1.70A {Pseudomonas aeruginosa} PDB: 1yul_A* 1yun_A*

Probab=97.77  E-value=2e-05  Score=71.57  Aligned_cols=39  Identities=26%  Similarity=0.195  Sum_probs=36.3

Q ss_pred             CeEEEEeCcccccCHHHHHHHHHHHhCC--CEEEEEEeCcc
Q 021802          249 ARIIYIDGAFDLFHAGHVEILRIARGLG--DFLLVGIHNDQ  287 (307)
Q Consensus       249 ~~~v~~~G~FDl~H~GHi~~L~~a~~~g--~~liVgv~~D~  287 (307)
                      ++++++.|+||++|.||+.++++|++.+  |.++|+++.|.
T Consensus        23 ~~i~i~~GsFdPiH~GHl~li~~a~~~~~ld~v~v~~~~~~   63 (242)
T 1yum_A           23 KRIGLFGGTFDPVHIGHMRSAVEMAEQFALDELRLLPNARP   63 (242)
T ss_dssp             CEEEEEEECCTTCCHHHHHHHHHHHHHHTCSEEEEEECCCC
T ss_pred             ceEEEEEeeCcHhhHHHHHHHHHHHHHcCCCEEEEEEcCCC
Confidence            6789999999999999999999999887  99999999885

>2qjo_A Bifunctional NMN adenylyltransferase/nudix hydrol; two individual domains, hydrolase; HET: APR NAD; 2.60A {Synechocystis SP}

Probab=97.76  E-value=1.3e-05  Score=74.37  Aligned_cols=40  Identities=20%  Similarity=0.326  Sum_probs=36.8

Q ss_pred             CeEEEEeCcccccCHHHHHHHHHHHhCCCEEEEEEeCccc
Q 021802          249 ARIIYIDGAFDLFHAGHVEILRIARGLGDFLLVGIHNDQT  288 (307)
Q Consensus       249 ~~~v~~~G~FDl~H~GHi~~L~~a~~~g~~liVgv~~D~~  288 (307)
                      ++++++.|+||.+|.||+.++++|++.+|.++|+|.++..
T Consensus         7 ~~~~i~~G~FdP~H~GH~~li~~a~~~~d~v~v~v~~~~~   46 (341)
T 2qjo_A            7 YQYGIYIGRFQPFHLGHLRTLNLALEKAEQVIIILGSHRV   46 (341)
T ss_dssp             EEEEEEEECCTTCCHHHHHHHHHHHHHEEEEEEEEEEETC
T ss_pred             eeEEEEEEEeCCCCHHHHHHHHHHHHhCCeEEEEECCccc
Confidence            4789999999999999999999999999999999998853

>2h29_A Probable nicotinate-nucleotide adenylyltransferase; NADD, namnat, nmnat; HET: DND; 2.00A {Staphylococcus aureus} PDB: 2h2a_A*

Probab=97.75  E-value=2.1e-05  Score=68.22  Aligned_cols=40  Identities=15%  Similarity=0.123  Sum_probs=34.7

Q ss_pred             eEEEEeCcccccCHHHHHHHHHHHhCC--CEEEEEEeCcccc
Q 021802          250 RIIYIDGAFDLFHAGHVEILRIARGLG--DFLLVGIHNDQTV  289 (307)
Q Consensus       250 ~~v~~~G~FDl~H~GHi~~L~~a~~~g--~~liVgv~~D~~v  289 (307)
                      +++++.|+||.+|.||+.++++|++..  |.+++..+.+...
T Consensus         3 ~~~v~~GsFdp~H~GH~~l~~~a~~~~~~d~v~~~~~~~~~~   44 (189)
T 2h29_A            3 KIVLYGGQFNPIHTAHMIVASEVFHELQPDEFYFLPSFMSPL   44 (189)
T ss_dssp             EEEEEEECCTTCCHHHHHHHHHHHHHHCCSEEEEEECSBCTT
T ss_pred             eEEEEEecCCcccHHHHHHHHHHHHHcCCCEEEEEECCCCCC
Confidence            688999999999999999999999875  8888877777543

>3uk2_A Pantothenate synthetase; AMP, structural genomics, seattle S genomics center for infectious disease, ssgcid, ligase; HET: AMP; 2.25A {Burkholderia thailandensis} SCOP: c.26.1.0

Probab=97.69  E-value=9.6e-05  Score=68.89  Aligned_cols=67  Identities=21%  Similarity=0.248  Sum_probs=56.2

Q ss_pred             EEEEecccCcCCHHHHHHHHHHHHcCCeEEEEEeCChhhhh-cCC--CCCCCHHHHHHHHHHccCccEEEE
Q 021802           53 RVYMDGCFDMMHYGHCNALRQARALGDQLVVGVVSDAEIIA-NKG--PPVTPLHERMIMVNAVKWVDEVIS  120 (307)
Q Consensus        53 ~V~~~G~FD~lH~GH~~lL~qAk~~gd~LiVgV~sD~~i~~-~Kg--~pi~s~eER~~ll~~~k~VD~Vv~  120 (307)
                      ++-...+..++|.||+.|+++|++.+|.++|.+..+|.-.. ...  +...+.+++.++++++ +||.++.
T Consensus        23 ~ig~VPTMG~LH~GH~sLi~~A~~~~d~vVvSifvnP~qf~~~ed~~~yprt~e~d~~ll~~~-GvD~vF~   92 (283)
T 3uk2_A           23 RTAFVPTMGNLHEGHLSLMRLARQHGDPVVASIFVNRLQFGPNEDFDKYPRTLQEDIEKLQKE-NVYVLFA   92 (283)
T ss_dssp             SCEEEEECSSCCHHHHHHHHHHHTTCSSEEEEECCCGGGSCTTSCTTTSCCCHHHHHHHHHTT-TCSEEEC
T ss_pred             eEEEECCCCcccHHHHHHHHHHHHhCCEEEEEEcCCHHHcCCcccccccCCCHHHHHHHHHHc-CCCEEEe
Confidence            47788899999999999999999999999999988875321 112  5788999999999998 9998876

>3h05_A Uncharacterized protein VPA0413; nucleotidylyl, transferase, MCSG, midwest center for structu genomics, PSI; 1.65A {Vibrio parahaemolyticus}

Probab=97.51  E-value=4.9e-05  Score=65.99  Aligned_cols=37  Identities=19%  Similarity=0.250  Sum_probs=32.7

Q ss_pred             CeEEEEeCcccccCHHHHHHHHHHHhCCCEEEEEEeCc
Q 021802          249 ARIIYIDGAFDLFHAGHVEILRIARGLGDFLLVGIHND  286 (307)
Q Consensus       249 ~~~v~~~G~FDl~H~GHi~~L~~a~~~g~~liVgv~~D  286 (307)
                      +++++..|+||++|.||+.+++ |.+..|.|++++..+
T Consensus         2 ~~igi~gGsFdPih~GHl~i~~-a~~~~d~v~~~p~~~   38 (177)
T 3h05_A            2 KKIAIFGSAFNPPSLGHKSVIE-SLSHFDLVLLEPSIA   38 (177)
T ss_dssp             CEEEEEEECCSSCCHHHHHHHT-TCTTSSEEEEEECC-
T ss_pred             cEEEEEEeccchhhHHHHHHHH-HHHHCCEEEEEECCC
Confidence            4789999999999999999998 776679999999875

>3inn_A Pantothenate synthetase; ssgcid, SBRI, UW, decode, NIH, niaid, pantoate beta alanine ligase, ATP-binding, cytoplasm, ligase; HET: ATP; 2.10A {Brucella melitensis}

Probab=97.45  E-value=0.00064  Score=64.11  Aligned_cols=75  Identities=23%  Similarity=0.261  Sum_probs=56.8

Q ss_pred             HhHhhhcCCCCeEEE--EecccCcCCHHHHHHHHHHHHcCCeEEEEEeCChhh-hhcCC--CCCCCHHHHHHHHHHccCc
Q 021802           41 WLQWTRKKKKPVRVY--MDGCFDMMHYGHCNALRQARALGDQLVVGVVSDAEI-IANKG--PPVTPLHERMIMVNAVKWV  115 (307)
Q Consensus        41 ~~~~~~~~~~~~~V~--~~G~FD~lH~GH~~lL~qAk~~gd~LiVgV~sD~~i-~~~Kg--~pi~s~eER~~ll~~~k~V  115 (307)
                      +.+.++..++++ ++  +.|   .+|.||+.|+++|++.+|.++|.|.-+|.= ..+..  ...-+.++..+++++. +|
T Consensus        34 ~~~~~r~~g~~I-gfVPTMG---~LH~GHlsLi~~A~~~~d~vVVSIFVNP~QF~~~EDl~~YPRtle~D~~ll~~~-Gv  108 (314)
T 3inn_A           34 ALAPARQQGKKI-GFVPTMG---YLHKGHLELVRRARVENDVTLVSIFVNPLQFGANEDLGRYPRDLERDAGLLHDA-QV  108 (314)
T ss_dssp             HHHHHHHTTCCE-EEEEECS---SCCHHHHHHHHHHHHHCSEEEEEECCCGGGSCTTSSTTTCCCCHHHHHHHHHHT-TC
T ss_pred             HHHHHHHcCCeE-EEEcCCC---ccCHHHHHHHHHHHHhCCEEEEEECCChhhcCCCccccccCCCHHHHHHHHHhC-CC
Confidence            333455555543 66  888   599999999999999999999999887742 11122  4567899999999998 99


Q ss_pred             cEEEE
Q 021802          116 DEVIS  120 (307)
Q Consensus       116 D~Vv~  120 (307)
                      |.++.
T Consensus       109 D~vF~  113 (314)
T 3inn_A          109 DYLFA  113 (314)
T ss_dssp             SEEEC
T ss_pred             CEEEC
Confidence            98765

>1k4m_A NAMN adenylyltransferase; nucleotidyltransferase; HET: NAD CIT; 1.90A {Escherichia coli} SCOP: c.26.1.3 PDB: 1k4k_A*

Probab=97.43  E-value=5.7e-05  Score=66.69  Aligned_cols=40  Identities=20%  Similarity=0.247  Sum_probs=34.8

Q ss_pred             eE-EEEeCcccccCHHHHHHHHHHHhCC--CEEEEEEeCcccc
Q 021802          250 RI-IYIDGAFDLFHAGHVEILRIARGLG--DFLLVGIHNDQTV  289 (307)
Q Consensus       250 ~~-v~~~G~FDl~H~GHi~~L~~a~~~g--~~liVgv~~D~~v  289 (307)
                      ++ ++..|+||.+|.||+.++++|++.+  |.+++.++.+...
T Consensus         3 ~i~~i~~GsFdPiH~GH~~l~~~a~~~~~~d~v~~~~~~~~~~   45 (213)
T 1k4m_A            3 SLQALFGGTFDPVHYGHLKPVETLANLIGLTRVTIIPNNVPPH   45 (213)
T ss_dssp             CCEEEEEECCTTCCHHHHHHHHHHHHHHTCSCEEEEECSSCTT
T ss_pred             eEEEEEEeCcCCCCHHHHHHHHHHHHHcCCCEEEEEECCCCCC
Confidence            45 8899999999999999999999876  8899999877543

>3q12_A Pantoate--beta-alanine ligase; structural genomics, center for structural genomics of infec diseases, csgid; HET: PAF; 1.58A {Yersinia pestis} SCOP: c.26.1.4 PDB: 3q10_A* 3mue_A 1iho_A 3guz_A*

Probab=97.22  E-value=0.00078  Score=62.85  Aligned_cols=75  Identities=19%  Similarity=0.203  Sum_probs=53.9

Q ss_pred             HhHhhhcCCCCeEEE--EecccCcCCHHHHHHHHHHHHcCCeEEEEEeCChhhh-hcCC--CCCCCHHHHHHHHHHccCc
Q 021802           41 WLQWTRKKKKPVRVY--MDGCFDMMHYGHCNALRQARALGDQLVVGVVSDAEII-ANKG--PPVTPLHERMIMVNAVKWV  115 (307)
Q Consensus        41 ~~~~~~~~~~~~~V~--~~G~FD~lH~GH~~lL~qAk~~gd~LiVgV~sD~~i~-~~Kg--~pi~s~eER~~ll~~~k~V  115 (307)
                      +.+.++..++++ ++  +.|+   +|-||+.|+++|++.+|.++|+|.-+|.=. .+..  ...-+.++=.+++++. +|
T Consensus        16 ~~~~~r~~g~~I-gfVPTMG~---LH~GHlsLv~~Ar~~~d~vVVSIFVNP~QF~~~EDl~~YPRtle~D~~~l~~~-gv   90 (287)
T 3q12_A           16 QIRRWRQEGKRI-ALVPTMGN---LHEGHMTLVDEAKTRADVVVVTIFVNPLQFERPDDLAHYPRTLQEDCEKLTRH-GA   90 (287)
T ss_dssp             HHHHHHHTTCCE-EEEEECSS---CCHHHHHHHHHHHTTSSEEEEEECCCGGGCSSHHHHHHSCCCHHHHHHHHHHH-TC
T ss_pred             HHHHHHHcCCeE-EEEcCCCc---ccHHHHHHHHHHHHhCCEEEEEeccCcccCCCcchhhcCCCCHHHHHHHHHHC-CC
Confidence            334455555554 66  8897   999999999999999999999987776311 0000  2345677778888887 99


Q ss_pred             cEEEE
Q 021802          116 DEVIS  120 (307)
Q Consensus       116 D~Vv~  120 (307)
                      |.++.
T Consensus        91 d~vF~   95 (287)
T 3q12_A           91 DLVFA   95 (287)
T ss_dssp             SEEEC
T ss_pred             CEEEC
Confidence            97765

>1nup_A FKSG76; NAD biosynthesis, mitochondria, pyridine adenylyltransferase catalysis, transferase; HET: NMN; 1.90A {Homo sapiens} SCOP: c.26.1.3 PDB: 1nuq_A* 1nur_A 1nus_A* 1nut_A* 1nuu_A*

Probab=96.82  E-value=0.00041  Score=63.04  Aligned_cols=36  Identities=14%  Similarity=0.278  Sum_probs=29.5

Q ss_pred             CeEEEEeCcccccCHHHHHHHHHHHhCCC----EEEEEEe
Q 021802          249 ARIIYIDGAFDLFHAGHVEILRIARGLGD----FLLVGIH  284 (307)
Q Consensus       249 ~~~v~~~G~FDl~H~GHi~~L~~a~~~g~----~liVgv~  284 (307)
                      .++++..|+||.+|.||+.++++|++..+    +.+||+.
T Consensus         6 ~~i~i~~GsFdPiH~GHl~l~~~a~~~~~~~~~~~vv~~~   45 (252)
T 1nup_A            6 PVVLLACGSFNPITNMHLRMFEVARDHLHQTGMYQVIQGI   45 (252)
T ss_dssp             EEEEEEEECCTTCCHHHHHHHHHHHHHHHHTTSEEEEEEE
T ss_pred             ceEEEEEecCcHhhHHHHHHHHHHHHHhcccCCceEEEEE
Confidence            57889999999999999999999986643    3676544

>1kqn_A Nmnat, nicotinamide mononucleotide adenylyl transferase; nucleotidyltransferase superfamily; HET: NAD; 2.20A {Homo sapiens} SCOP: c.26.1.3 PDB: 1kqo_A* 1kr2_A* 1kku_A 1gzu_A*

Probab=96.70  E-value=0.00051  Score=63.61  Aligned_cols=37  Identities=16%  Similarity=0.372  Sum_probs=30.0

Q ss_pred             CCCeEEEEeCcccccCHHHHHHHHHHHhCCC-----EEEEEE
Q 021802          247 PDARIIYIDGAFDLFHAGHVEILRIARGLGD-----FLLVGI  283 (307)
Q Consensus       247 ~~~~~v~~~G~FDl~H~GHi~~L~~a~~~g~-----~liVgv  283 (307)
                      +..++++..|+||.+|.||+.++++|++..+     .++|++
T Consensus         6 ~~~~i~i~gGsFDPiH~GHl~l~~~a~~~~~~d~~~~vvv~~   47 (279)
T 1kqn_A            6 KTEVVLLACGSFNPITNMHLRLFELAKDYMNGTGRYTVVKGI   47 (279)
T ss_dssp             CEEEEEEEEECCTTCCHHHHHHHHHHHHHHHHTSSEEEEEEE
T ss_pred             CCceEEEEEeeecHhhHHHHHHHHHHHHHhcccCCceEEEEE
Confidence            3468899999999999999999999986642     366654

>3mxt_A Pantothenate synthetase; alpha-beta-alpha, structural genomics, center for structural of infectious diseases, csgid, ligase; HET: MSE; 1.85A {Campylobacter jejuni subsp} SCOP: c.26.1.0 PDB: 3uy4_A*

Probab=96.69  E-value=0.0075  Score=56.16  Aligned_cols=74  Identities=19%  Similarity=0.236  Sum_probs=52.1

Q ss_pred             hHhhhcCCCCe-EEEEecccCcCCHHHHHHHHHHHHcCCeEEEEEeCChhh-hhcCC--CCCCCHHHHHHHHHHccCccE
Q 021802           42 LQWTRKKKKPV-RVYMDGCFDMMHYGHCNALRQARALGDQLVVGVVSDAEI-IANKG--PPVTPLHERMIMVNAVKWVDE  117 (307)
Q Consensus        42 ~~~~~~~~~~~-~V~~~G~FD~lH~GH~~lL~qAk~~gd~LiVgV~sD~~i-~~~Kg--~pi~s~eER~~ll~~~k~VD~  117 (307)
                      .+.++..++.+ -|=+.|+   +|-||+.|+++|++ +|.++|.|.-+|.= ..+..  ...-+.++=.+++++. +||.
T Consensus        17 ~~~~~~~g~~Ig~VPTMGa---LH~GHlsLv~~Ar~-~d~VVVSIFVNP~QF~~~EDl~~YPRtle~D~~ll~~~-gvD~   91 (285)
T 3mxt_A           17 VKDWKSHQLSIGYVPTMGF---LHDGHLSLVKHAKT-QDKVIVSIFVNPMQFGPNEDFSSYPRDLERDIKMCQDN-GVDM   91 (285)
T ss_dssp             HHHHHHTTCCEEEEEECSS---CCHHHHHHHHHHTT-SSEEEEEECCCGGGCCTTSCTTTSCCCHHHHHHHHHHT-TCSE
T ss_pred             HHHHHHcCCeEEEEcCCCc---ccHHHHHHHHHHHh-CCEEEEEeccCccccCCchhhhcCCCCHHHHHHHHHHC-CCCE
Confidence            33444555543 2337775   99999999999999 99999998777631 11111  3456678888889997 9997


Q ss_pred             EEE
Q 021802          118 VIS  120 (307)
Q Consensus       118 Vv~  120 (307)
                      ++.
T Consensus        92 vF~   94 (285)
T 3mxt_A           92 VFI   94 (285)
T ss_dssp             EEC
T ss_pred             EEC
Confidence            765

>1r6x_A ATP:sulfate adenylyltransferase; APS kinase-like domain; 1.40A {Saccharomyces cerevisiae} SCOP: b.122.1.3 c.26.1.5

Probab=96.59  E-value=0.11  Score=50.49  Aligned_cols=105  Identities=14%  Similarity=0.119  Sum_probs=64.0

Q ss_pred             hHHhHhhhcCCCCeEEEEecccCcCCHHHHHHHH-HHHHcCCeEEEEEeCChhhhhcCCCCCCCHHHHHHHHHHcc---C
Q 021802           39 DRWLQWTRKKKKPVRVYMDGCFDMMHYGHCNALR-QARALGDQLVVGVVSDAEIIANKGPPVTPLHERMIMVNAVK---W  114 (307)
Q Consensus        39 ~~~~~~~~~~~~~~~V~~~G~FD~lH~GH~~lL~-qAk~~gd~LiVgV~sD~~i~~~Kg~pi~s~eER~~ll~~~k---~  114 (307)
                      .++...+++.+.. +|++..+.+++|.||..++. .|.+.++.|++  |+  .+-..| +-=.+.+-|++..+.+.   -
T Consensus       176 ~e~R~~f~~~gw~-~VvafqtrNP~HraH~e~~~r~a~e~~~~lll--hP--lvG~tK-~~Dip~~vR~~~~~~~l~~yp  249 (395)
T 1r6x_A          176 AQLRLEFQSRQWD-RVVAFQTRNPMHRAHRELTVRAAREANAKVLI--HP--VVGLTK-PGDIDHHTRVRVYQEIIKRYP  249 (395)
T ss_dssp             HHHHHHHHHTTCC-CEEEECCSSCCCHHHHHHHHHHHHHTTCEEEE--CC--BCSBCC-TTCCCHHHHHHHHHHHGGGSS
T ss_pred             HHHHHHHHhcCCC-cEEEeccCCCcchhhHHHHHHHHHHcCCcEEE--EE--CCCCCC-CCCCCHHHHHHHHHHHHHhCC
Confidence            3344444444444 48899999999999966654 55555665553  33  121122 33478899999887743   1


Q ss_pred             ccEEEEcCCCcc-------cHHHHHHHH-HhcCccEEEEcCCCC
Q 021802          115 VDEVISDAPYAI-------TKDFMKKLF-DEYNIDYIIHGDDPC  150 (307)
Q Consensus       115 VD~Vv~~~py~~-------t~dfle~ll-~~l~~d~VV~GdD~~  150 (307)
                      -+.+++ .+|..       .+.-+..++ +.|+|.+.++|-|+.
T Consensus       250 ~~~v~l-~~~p~~mryAGPrEai~HAiiRkN~GcthfIVGRDhA  292 (395)
T 1r6x_A          250 NGIAFL-SLLPLAMRMSGDREAVWHAIIRKNYGASHFIVGRDHA  292 (395)
T ss_dssp             TTCEEE-CCBCCBCCCCHHHHHHHHHHHHHHTTCSEEEECTTTT
T ss_pred             CccEEE-EecchhhhhcCcHHHHHHHHHHHHcCCceEEECCCCC
Confidence            244554 33321       234445544 459999999999986

>2x0k_A Riboflavin biosynthesis protein RIBF; riboflavin kinase, nucleotide-binding, transferase, ATP-BIND multifunctional enzyme; 1.95A {Corynebacterium ammoniagenes}

Probab=96.52  E-value=0.0012  Score=62.83  Aligned_cols=40  Identities=18%  Similarity=0.177  Sum_probs=33.4

Q ss_pred             CeEEEEeCcccccCHHHHHHHHHHHhCCCE---EEEEEeCccc
Q 021802          249 ARIIYIDGAFDLFHAGHVEILRIARGLGDF---LLVGIHNDQT  288 (307)
Q Consensus       249 ~~~v~~~G~FDl~H~GHi~~L~~a~~~g~~---liVgv~~D~~  288 (307)
                      ...|++-|+||.+|.||..+|++|++.++.   ..|.++-|..
T Consensus        15 ~~~vvtiG~FDGvH~GHq~Li~~a~~~a~~~~~~~vvvtFdph   57 (338)
T 2x0k_A           15 DNSAVTIGVFDGVHRGHQKLINATVEKAREVGAKAIMVTFDPH   57 (338)
T ss_dssp             CCEEEEESCCTTCCHHHHHHHHHHHHHHHHHTCEEEEEEESSC
T ss_pred             CCeEEEEEeCCcccHHHHHHHHHHHHHHHHcCCcEEEEEecCC
Confidence            357899999999999999999999987654   5777877763

>3q12_A Pantoate--beta-alanine ligase; structural genomics, center for structural genomics of infec diseases, csgid; HET: PAF; 1.58A {Yersinia pestis} SCOP: c.26.1.4 PDB: 3q10_A* 3mue_A 1iho_A 3guz_A*

Probab=96.31  E-value=0.0043  Score=57.85  Aligned_cols=36  Identities=28%  Similarity=0.472  Sum_probs=31.9

Q ss_pred             CCeEEE--EeCcccccCHHHHHHHHHHHhCCCEEEEEEeCc
Q 021802          248 DARIIY--IDGAFDLFHAGHVEILRIARGLGDFLLVGIHND  286 (307)
Q Consensus       248 ~~~~v~--~~G~FDl~H~GHi~~L~~a~~~g~~liVgv~~D  286 (307)
                      +++|++  +-|+   +|.||+.++++||+.||.+||+|.-+
T Consensus        24 g~~IgfVPTMG~---LH~GHlsLv~~Ar~~~d~vVVSIFVN   61 (287)
T 3q12_A           24 GKRIALVPTMGN---LHEGHMTLVDEAKTRADVVVVTIFVN   61 (287)
T ss_dssp             TCCEEEEEECSS---CCHHHHHHHHHHHTTSSEEEEEECCC
T ss_pred             CCeEEEEcCCCc---ccHHHHHHHHHHHHhCCEEEEEeccC
Confidence            568888  6686   99999999999999999999998755

>1g8f_A Sulfate adenylyltransferase; alpha-beta protein, beta-barrel, rossmann-fold, kinase fold; 1.95A {Saccharomyces cerevisiae} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1g8g_A* 1g8h_A* 1j70_A 1jec_A 1jed_A* 1jee_A*

Probab=96.13  E-value=0.25  Score=49.33  Aligned_cols=106  Identities=18%  Similarity=0.197  Sum_probs=64.6

Q ss_pred             hHHhHhhhcCCCCeEEEEecccCcCCHHHHHHH-HHHHHcCCeEEEEEeCChhhhhcCCCCCCCHHHHHHHHHHcc--C-
Q 021802           39 DRWLQWTRKKKKPVRVYMDGCFDMMHYGHCNAL-RQARALGDQLVVGVVSDAEIIANKGPPVTPLHERMIMVNAVK--W-  114 (307)
Q Consensus        39 ~~~~~~~~~~~~~~~V~~~G~FD~lH~GH~~lL-~qAk~~gd~LiVgV~sD~~i~~~Kg~pi~s~eER~~ll~~~k--~-  114 (307)
                      .++...+++.+.. +|++..+++++|.||..++ +.|.+.++.|++-..--+    .| +-=.+.+-|++..+.+.  + 
T Consensus       177 ~e~r~~f~~~gw~-~v~afqtrnP~HraH~e~~~~~a~e~~~~lll~pl~g~----~k-~~di~~~~r~~~~~~~~~~yp  250 (511)
T 1g8f_A          177 AQLRLEFQSRQWD-RVVAFQTRNPMHRAHRELTVRAAREANAKVLIHPVVGL----TK-PGDIDHHTRVRVYQEIIKRYP  250 (511)
T ss_dssp             HHHHHHHHHTTCC-CEEEEEESSCCCHHHHHHHHHHHHHHTCEEEEEEBCSB----CS-TTCCCHHHHHHHHHHHGGGSC
T ss_pred             HHHHHHHHHcCCC-cEEEEecCCCCchHHHHHHHHHHHHcCCcEEEEECCCC----CC-CCCCCHHHHHHHHHHHHHhCC
Confidence            3344444444444 4888999999999996555 555565776654222111    22 23478899999888753  1 


Q ss_pred             ccEEEE-cCCCcc-----cHHHHHHHH-HhcCccEEEEcCCCC
Q 021802          115 VDEVIS-DAPYAI-----TKDFMKKLF-DEYNIDYIIHGDDPC  150 (307)
Q Consensus       115 VD~Vv~-~~py~~-----t~dfle~ll-~~l~~d~VV~GdD~~  150 (307)
                      -+.+++ ..|+..     .+.-+..++ +.|+|.+.++|-|+.
T Consensus       251 ~~~~~l~~~p~~m~yaGprea~~hai~r~n~G~th~IvGrdhA  293 (511)
T 1g8f_A          251 NGIAFLSLLPLAMRMSGDREAVWHAIIRKNYGASHFIVGRDHA  293 (511)
T ss_dssp             TTSEEECCBCCBCCCCHHHHHHHHHHHHHHTTCSEEECCTTTT
T ss_pred             cccEEEEecchhhhccCcHHHHHHHHHHHhCCCceEEeCCCCC
Confidence            234443 233321     234445544 459999999999986

>3op1_A Macrolide-efflux protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: PEG; 2.49A {Streptococcus pneumoniae}

Probab=96.09  E-value=0.0032  Score=59.30  Aligned_cols=39  Identities=26%  Similarity=0.385  Sum_probs=31.2

Q ss_pred             CeEEEEeCcccccCHHHHHHHHHHHhCCCEE---EEEEeCcc
Q 021802          249 ARIIYIDGAFDLFHAGHVEILRIARGLGDFL---LVGIHNDQ  287 (307)
Q Consensus       249 ~~~v~~~G~FDl~H~GHi~~L~~a~~~g~~l---iVgv~~D~  287 (307)
                      ...|++-|.||-+|.||..+|++|++.++.+   .|.++-|.
T Consensus        20 ~~~vvtiG~FDGvH~GHq~li~~a~~~a~~~~~~~vV~TFdp   61 (308)
T 3op1_A           20 SDSVVVLGYFDGIHKGHQELFRVANKAARKDLLPIVVMTFNE   61 (308)
T ss_dssp             SCEEEEESCCSSCCHHHHHHHHHHHHHSSTTCCCEEEEEESS
T ss_pred             CCeEEEEecCCcccHHHHHHHHHHHHHHHhcCCceEEEEecC
Confidence            4679999999999999999999999876542   45555554

>3gmi_A UPF0348 protein MJ0951; protein with unknown function, structural genomics, PSI, MCS protein structure initiative; 1.91A {Methanocaldococcus jannaschii}

Probab=95.40  E-value=0.018  Score=55.31  Aligned_cols=36  Identities=14%  Similarity=0.299  Sum_probs=29.6

Q ss_pred             CCeEEEEeCcccccCHHHHHHHHHHHhCCCEEEEEEeC
Q 021802          248 DARIIYIDGAFDLFHAGHVEILRIARGLGDFLLVGIHN  285 (307)
Q Consensus       248 ~~~~v~~~G~FDl~H~GHi~~L~~a~~~g~~liVgv~~  285 (307)
                      ++++|.+-|.||.||.||..++++|++ .+ +++.|-+
T Consensus        51 ~~~~v~~lG~FDg~H~GHq~lI~~a~~-~~-~~~~Vms   86 (357)
T 3gmi_A           51 KDKIVCDFTEYNPLHKGHKYALEKGKE-HG-IFISVLP   86 (357)
T ss_dssp             CCCEEEEECCCTTCCHHHHHHHHHHHT-SS-EEEEEEC
T ss_pred             CCCEEEEEEecCccCHHHHHHHHHHHH-cC-CeEEEEc
Confidence            357899999999999999999999999 55 4444444

>3n8h_A Pantothenate synthetase; alpha-beta sandwich, ligase, structural genomics, structural of infectious diseases; HET: MSE AMP GOL; 2.00A {Francisella tularensis subsp} PDB: 3qtt_A*

Probab=95.37  E-value=0.05  Score=50.07  Aligned_cols=66  Identities=14%  Similarity=0.283  Sum_probs=47.2

Q ss_pred             EEEecccCcCCHHHHHHHHHHHHcCCeEEEEEeCChhhhh-cCC--CCCCCHHHHHHHHHHccCccEEEE
Q 021802           54 VYMDGCFDMMHYGHCNALRQARALGDQLVVGVVSDAEIIA-NKG--PPVTPLHERMIMVNAVKWVDEVIS  120 (307)
Q Consensus        54 V~~~G~FD~lH~GH~~lL~qAk~~gd~LiVgV~sD~~i~~-~Kg--~pi~s~eER~~ll~~~k~VD~Vv~  120 (307)
                      +-..-+-=.+|-||+.|+++|++.+|.++|.|.-+|.=.. +..  ...-+.++=.+++++. +||.++.
T Consensus        26 ig~VPTMGaLH~GHlsLv~~Ar~~~d~vVVSIFVNP~QF~~~EDl~~YPRtle~D~~ll~~~-gvD~vF~   94 (264)
T 3n8h_A           26 IGFVPTMGALHNGHISLIKKAKSENDVVIVSIFVNPTQFNNPNDYQTYPNQLQQDIQILASL-DVDVLFN   94 (264)
T ss_dssp             EEEEEECSSCCHHHHHHHHHHHHHCSEEEEEECCCGGGCSCHHHHHHSCCCHHHHHHHHHHT-TCSEEEC
T ss_pred             EEEECCCcchhHHHHHHHHHHHHhCCEEEEEEccCcccCCCcchhhcCCCCHHHHHHHHHHC-CCCEEEC
Confidence            4444444579999999999999999999999877763110 000  2345677778888987 9997765

>3mxt_A Pantothenate synthetase; alpha-beta-alpha, structural genomics, center for structural of infectious diseases, csgid, ligase; HET: MSE; 1.85A {Campylobacter jejuni subsp} SCOP: c.26.1.0 PDB: 3uy4_A*

Probab=94.46  E-value=0.039  Score=51.34  Aligned_cols=35  Identities=29%  Similarity=0.549  Sum_probs=29.9

Q ss_pred             CCeEEEEe--CcccccCHHHHHHHHHHHhCCCEEEEEEeCc
Q 021802          248 DARIIYID--GAFDLFHAGHVEILRIARGLGDFLLVGIHND  286 (307)
Q Consensus       248 ~~~~v~~~--G~FDl~H~GHi~~L~~a~~~g~~liVgv~~D  286 (307)
                      +++|++|+  |+   +|.||+.++++|++ +|.+||.|.-+
T Consensus        24 g~~Ig~VPTMGa---LH~GHlsLv~~Ar~-~d~VVVSIFVN   60 (285)
T 3mxt_A           24 QLSIGYVPTMGF---LHDGHLSLVKHAKT-QDKVIVSIFVN   60 (285)
T ss_dssp             TCCEEEEEECSS---CCHHHHHHHHHHTT-SSEEEEEECCC
T ss_pred             CCeEEEEcCCCc---ccHHHHHHHHHHHh-CCEEEEEeccC
Confidence            46777764  65   99999999999999 99999998754

>3inn_A Pantothenate synthetase; ssgcid, SBRI, UW, decode, NIH, niaid, pantoate beta alanine ligase, ATP-binding, cytoplasm, ligase; HET: ATP; 2.10A {Brucella melitensis}

Probab=94.22  E-value=0.045  Score=51.59  Aligned_cols=37  Identities=35%  Similarity=0.512  Sum_probs=32.2

Q ss_pred             CCeEEE--EeCcccccCHHHHHHHHHHHhCCCEEEEEEeCcc
Q 021802          248 DARIIY--IDGAFDLFHAGHVEILRIARGLGDFLLVGIHNDQ  287 (307)
Q Consensus       248 ~~~~v~--~~G~FDl~H~GHi~~L~~a~~~g~~liVgv~~D~  287 (307)
                      +++|++  +-|.   +|.||+.++++|++.+|.+||.|.-+.
T Consensus        42 g~~IgfVPTMG~---LH~GHlsLi~~A~~~~d~vVVSIFVNP   80 (314)
T 3inn_A           42 GKKIGFVPTMGY---LHKGHLELVRRARVENDVTLVSIFVNP   80 (314)
T ss_dssp             TCCEEEEEECSS---CCHHHHHHHHHHHHHCSEEEEEECCCG
T ss_pred             CCeEEEEcCCCc---cCHHHHHHHHHHHHhCCEEEEEECCCh
Confidence            568888  5685   999999999999999999999997653

>2gks_A Bifunctional SAT/APS kinase; transferase, sulfurylase; HET: ADP; 2.31A {Aquifex aeolicus}

Probab=93.22  E-value=0.69  Score=46.34  Aligned_cols=104  Identities=16%  Similarity=0.132  Sum_probs=64.7

Q ss_pred             HhHhhhcCCCCeEEEEecccCcCCHHHHHHHHHHHH-cCCeEEEEEeCChhhhhcCCCCCCCHHHHHHHHHHc----cCc
Q 021802           41 WLQWTRKKKKPVRVYMDGCFDMMHYGHCNALRQARA-LGDQLVVGVVSDAEIIANKGPPVTPLHERMIMVNAV----KWV  115 (307)
Q Consensus        41 ~~~~~~~~~~~~~V~~~G~FD~lH~GH~~lL~qAk~-~gd~LiVgV~sD~~i~~~Kg~pi~s~eER~~ll~~~----k~V  115 (307)
                      +...+++.+.. +|++.=+++++|.||..++++|.+ .++.|+|  ++-  +-..| +.=.+.+-|++.++.+    ---
T Consensus       154 ~r~~~~~~gw~-~v~afqtrnP~Hr~H~~l~~~a~~~~~~~llv--~p~--~g~~k-~~di~~~~R~~~~~~~~~~~~p~  227 (546)
T 2gks_A          154 VREEIKSLGLD-KIVAFQTRNPMHRVHEELTKRAMEKVGGGLLL--HPV--VGLTK-PGDVDVYTRMRIYKVLYEKYYDK  227 (546)
T ss_dssp             HHHHHHHHTCS-CEEEECCSSCCCHHHHHHHHHHHHHHTSEEEE--CCB--CSBCC-TTSCCHHHHHHHHHHHHHHHSCT
T ss_pred             HHHHHHHcCCC-cEEEEecCCCCcHHHHHHHHHHHHhcCCcEEE--EeC--cCCCC-CCCCCHHHHHHHHHHHHHhcCCC
Confidence            33334433334 488899999999999999999996 6787664  322  11112 2346889999988875    112


Q ss_pred             cEEEE-cCCCc--c---cHHHHHHH-HHhcCccEEEEcCCCC
Q 021802          116 DEVIS-DAPYA--I---TKDFMKKL-FDEYNIDYIIHGDDPC  150 (307)
Q Consensus       116 D~Vv~-~~py~--~---t~dfle~l-l~~l~~d~VV~GdD~~  150 (307)
                      +.+++ ..|+.  +   .+.-+..+ -+.++|...++|-|+.
T Consensus       228 ~~v~~~~~p~~m~~agprea~~ha~ir~n~G~th~ivgrdha  269 (546)
T 2gks_A          228 KKTILAFLPLAMRMAGPREALWHGIIRRNYGATHFIVGRDHA  269 (546)
T ss_dssp             TTEEECBBCCBCCCCTHHHHHHHHHHHHHTTCSEEEECTTTT
T ss_pred             CcEEEeecCchhhccCchHHHHHHHHHHhCCCCeEEECCCCC
Confidence            44444 12221  1   23333343 3569999999998875

>3ag6_A Pantothenate synthetase; ATP-dependent enzyme, ATP-binding, nucleotide-binding, pantothenate biosynthesis; HET: PAJ PG4; 1.85A {Staphylococcus aureus} PDB: 3ag5_A* 2x3f_A*

Probab=92.77  E-value=0.14  Score=47.67  Aligned_cols=37  Identities=24%  Similarity=0.462  Sum_probs=31.5

Q ss_pred             CCeEEE--EeCcccccCHHHHHHHHHHHhCCCEEEEEEeCcc
Q 021802          248 DARIIY--IDGAFDLFHAGHVEILRIARGLGDFLLVGIHNDQ  287 (307)
Q Consensus       248 ~~~~v~--~~G~FDl~H~GHi~~L~~a~~~g~~liVgv~~D~  287 (307)
                      +++|++  +-|.   +|.||..++++|++.+|.+||.+....
T Consensus        22 g~~I~fVpTmG~---lH~GH~~LI~~a~~~a~~vVvsffvnP   60 (283)
T 3ag6_A           22 GTTIGFIPTMGA---LHDGHLTMVRESVSTNDITIVSVFVNP   60 (283)
T ss_dssp             TCCEEEEEECSS---CCHHHHHHHHHHHTTSSEEEEEECCCG
T ss_pred             CCcEEEEECCcc---ccHHHHHHHHHHHHhCCEEEEEEeCCh
Confidence            456766  6776   999999999999999999999998764

>3n8h_A Pantothenate synthetase; alpha-beta sandwich, ligase, structural genomics, structural of infectious diseases; HET: MSE AMP GOL; 2.00A {Francisella tularensis subsp} PDB: 3qtt_A*

Probab=92.16  E-value=0.081  Score=48.68  Aligned_cols=39  Identities=21%  Similarity=0.521  Sum_probs=32.2

Q ss_pred             CCCeEEEEeCcccccCHHHHHHHHHHHhCCCEEEEEEeCc
Q 021802          247 PDARIIYIDGAFDLFHAGHVEILRIARGLGDFLLVGIHND  286 (307)
Q Consensus       247 ~~~~~v~~~G~FDl~H~GHi~~L~~a~~~g~~liVgv~~D  286 (307)
                      .+++|++|+ +---+|.||+.++++|++.+|.+||.|.-+
T Consensus        22 ~g~~ig~VP-TMGaLH~GHlsLv~~Ar~~~d~vVVSIFVN   60 (264)
T 3n8h_A           22 KQQKIGFVP-TMGALHNGHISLIKKAKSENDVVIVSIFVN   60 (264)
T ss_dssp             TTSCEEEEE-ECSSCCHHHHHHHHHHHHHCSEEEEEECCC
T ss_pred             CCCcEEEEC-CCcchhHHHHHHHHHHHHhCCEEEEEEccC
Confidence            456788875 222589999999999999999999999754

>1v8f_A Pantoate-beta-alanine ligase; rossmann fold, dimer, structural genomics, riken STR genomics/proteomics initiative, RSGI; HET: P6G; 1.90A {Thermus thermophilus} SCOP: c.26.1.4 PDB: 1ufv_A

Probab=92.01  E-value=0.15  Score=47.28  Aligned_cols=34  Identities=24%  Similarity=0.456  Sum_probs=30.2

Q ss_pred             EEEEeCcccccCHHHHHHHHHHHhCCCEEEEEEeCcc
Q 021802          251 IIYIDGAFDLFHAGHVEILRIARGLGDFLLVGIHNDQ  287 (307)
Q Consensus       251 ~v~~~G~FDl~H~GHi~~L~~a~~~g~~liVgv~~D~  287 (307)
                      .|.+-|.   +|.||..++++|++.++.+||.+..+.
T Consensus        21 ~VpTmG~---lH~GH~~Li~~A~~~a~~vVvsff~nP   54 (276)
T 1v8f_A           21 FVPTMGY---LHRGHLALVERARRENPFVVVSVFVNP   54 (276)
T ss_dssp             EEEECSS---CCHHHHHHHHHHHHHCSEEEEEECCCG
T ss_pred             EEEeCCC---ccHHHHHHHHHHHHhCCEEEEEEECCH
Confidence            4556777   999999999999999999999999885

>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}

Probab=91.40  E-value=2.5  Score=42.45  Aligned_cols=106  Identities=8%  Similarity=0.054  Sum_probs=62.5

Q ss_pred             hHHhHhhhcCCCCeEEEEecccCcCCHHHHHHHHHHH-HcCCeEEEEEeCChhhhhcCCCCCCCHHHHHHHHHHcc--C-
Q 021802           39 DRWLQWTRKKKKPVRVYMDGCFDMMHYGHCNALRQAR-ALGDQLVVGVVSDAEIIANKGPPVTPLHERMIMVNAVK--W-  114 (307)
Q Consensus        39 ~~~~~~~~~~~~~~~V~~~G~FD~lH~GH~~lL~qAk-~~gd~LiVgV~sD~~i~~~Kg~pi~s~eER~~ll~~~k--~-  114 (307)
                      .++...+++.+.. +|++.=+-+++|.+|..++++|. +.++.|++  |+  .+-..| +-=.+.+-|++..+.+.  + 
T Consensus       152 ~e~r~~~~~~gw~-~v~afqtrnp~Hrah~~~~~~~~~~~~~~lll--~p--l~g~~k-~~d~~~~~r~~~~~~~~~~~p  225 (552)
T 3cr8_A          152 AELRALFVRRGWR-RIIAWQARQPMHRAQYEFCLKSAIENEANLLL--HP--QVGGDI-TEAPAYFGLVRSFLAIRDRFP  225 (552)
T ss_dssp             HHHHHHHHHTTCC-SEEEECCSSCCCHHHHHHHHHHHHHTTCEEEE--CC--BCCCCT-TTCTTHHHHHHHHHHHGGGSC
T ss_pred             HHHHHHHHhcCCC-ceEEEecCCCCchHHHHHHHHHHHhcCCeEEE--Ee--ccCCCC-CCCCCHHHHHHHHHHHHHhCC
Confidence            3444445444444 38888999999999999999998 66775553  33  221112 34577889998877742  2 


Q ss_pred             ccEEEE-cCCCc-----ccHHHHHHHH-HhcCccEEEEcCCCC
Q 021802          115 VDEVIS-DAPYA-----ITKDFMKKLF-DEYNIDYIIHGDDPC  150 (307)
Q Consensus       115 VD~Vv~-~~py~-----~t~dfle~ll-~~l~~d~VV~GdD~~  150 (307)
                      -+.+++ ..|+.     ..+.-+..++ +.|+|...++|-|+.
T Consensus       226 ~~~~~l~~~p~~m~~agprea~~ha~~r~n~G~th~ivGrdha  268 (552)
T 3cr8_A          226 AATTQLSLLPAPPPEASGRALLLRAIVARNFGCSLLIAGGEHQ  268 (552)
T ss_dssp             GGGEEECBBCSCCCCSCSHHHHHHHHHHHHHTCSEEEC-----
T ss_pred             CccEEEeecchhhcccCcHHHHHHHHHHHhCCCCeeeeCCCCC
Confidence            244443 13332     1244444444 459999999999875

>1x6v_B Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthethase 1; transferase, ATP sulfurylase, APS kinase, PAPS; HET: ADP; 1.75A {Homo sapiens} SCOP: b.122.1.3 c.26.1.5 c.37.1.4 PDB: 1xjq_B* 1xnj_B* 2qjf_A* 2ofx_A* 2ofw_A*

Probab=90.95  E-value=5.6  Score=40.63  Aligned_cols=104  Identities=19%  Similarity=0.095  Sum_probs=64.9

Q ss_pred             HHhHhhhcCCCCeEEEEecccCcCCHHHHHHHHHHHH-cCC------eEEEEEeCChhhhhcCCCCCCCHHHHHHHHHHc
Q 021802           40 RWLQWTRKKKKPVRVYMDGCFDMMHYGHCNALRQARA-LGD------QLVVGVVSDAEIIANKGPPVTPLHERMIMVNAV  112 (307)
Q Consensus        40 ~~~~~~~~~~~~~~V~~~G~FD~lH~GH~~lL~qAk~-~gd------~LiVgV~sD~~i~~~Kg~pi~s~eER~~ll~~~  112 (307)
                      ++...+++.+.. +|++.=+-+++|.||..+++.|.+ .+|      -|+  +|+  .+-..| +-=.+.+-|++..+.+
T Consensus       402 e~r~~f~~~gw~-~VvafqtrNP~HraHe~l~~~a~~~~~d~g~~~~~ll--l~p--l~G~tk-~~di~~~~r~~~~~~~  475 (630)
T 1x6v_B          402 ELKQKFKDMNAD-AVSAFQLRNPVHNGHALLMQDTHKQLLERGYRRPVLL--LHP--LGGWTK-DDDVPLMWRMKQHAAV  475 (630)
T ss_dssp             HHHHHHHHTTCS-EEEEEEESSCCCHHHHHHHHHHHHHHHHHTCSSEEEE--EEE--BCSCCC-TTSCCHHHHHHHHHHH
T ss_pred             HHHHHHHHcCCC-eEEEEecCCCccHHHHHHHHHHHHHHHhhccCCCcEE--EEe--CcCCCC-CCCCCHHHHHHHHHHH
Confidence            333334444444 588888999999999999999986 344      243  332  111112 3456888998877763


Q ss_pred             c---Cc--cEEEEcCCCcc-------cHHHHHHHH-HhcCccEEEEcCCCC
Q 021802          113 K---WV--DEVISDAPYAI-------TKDFMKKLF-DEYNIDYIIHGDDPC  150 (307)
Q Consensus       113 k---~V--D~Vv~~~py~~-------t~dfle~ll-~~l~~d~VV~GdD~~  150 (307)
                      -   +.  +.+++ .+|..       .+.-+..++ +.++|...++|-|+.
T Consensus       476 ~~~~y~p~~~~~l-~~~p~~mryaGPrEa~~hai~rkN~Gcth~IVGrdhA  525 (630)
T 1x6v_B          476 LEEGVLNPETTVV-AIFPSPMMYAGPTEVQWHCRARMVAGANFYIVGRDPA  525 (630)
T ss_dssp             HHTTSSCGGGEEE-CCBCCCCCCCHHHHHHHHHHHHHHTTCSEEEECSSTT
T ss_pred             HHcCCCCCcceEE-eeccchhhhcCcHHHHHHHHHHHhCCCCeEEECCCCC
Confidence            2   12  55665 44321       234445544 459999999999986

>3cov_A Pantothenate synthetase; pantothenate biosynthesis, enzym ligase, drug design, ATP-binding, magnesium, metal-binding; 1.50A {Mycobacterium tuberculosis} SCOP: c.26.1.4 PDB: 3cow_A* 3coy_A* 3coz_A* 3imc_A* 3ime_A* 3img_A* 3iob_A* 3ioc_A* 3iod_A* 3ioe_A* 3iub_A* 3iue_A* 3ivc_A* 3ivg_A* 3ivx_A* 2a84_A* 1n2b_A* 1n2e_A* 1n2g_A* 1n2h_A* ...

Probab=90.83  E-value=0.25  Score=46.21  Aligned_cols=38  Identities=24%  Similarity=0.556  Sum_probs=29.5

Q ss_pred             CeEEEEeCcccccCHHHHHHHHHHHh-CCCEEEEEEeCcc
Q 021802          249 ARIIYIDGAFDLFHAGHVEILRIARG-LGDFLLVGIHNDQ  287 (307)
Q Consensus       249 ~~~v~~~G~FDl~H~GHi~~L~~a~~-~g~~liVgv~~D~  287 (307)
                      ++++++ .++.-+|.||..++++|++ .++.+||.+....
T Consensus        33 ~~vg~V-pTmG~LH~GH~sLI~~A~~~~a~~vVvSffvnP   71 (301)
T 3cov_A           33 RRVMLV-PTMGALHEGHLALVRAAKRVPGSVVVVSIFVNP   71 (301)
T ss_dssp             CEEEEE-EECSCCCHHHHHHHHHHHTSTTEEEEEEECCCG
T ss_pred             CcEEEE-ecCCcccHHHHHHHHHHHHhcCCEEEEEEcCCh
Confidence            354443 3444499999999999999 9999999998763

>1m8p_A Sulfate adenylyltransferase; rossmann fold, phosphosulfate binding, T-state; HET: PPS; 2.60A {Penicillium chrysogenum} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1i2d_A*

Probab=90.13  E-value=1.6  Score=43.89  Aligned_cols=106  Identities=14%  Similarity=0.059  Sum_probs=65.2

Q ss_pred             hHHhHhhhcCCCCeEEEEecccCcCCHHHHHHHHHHHHc-CCeEEEEEeCChhhhhcCCCCCCCHHHHHHHHHHcc--C-
Q 021802           39 DRWLQWTRKKKKPVRVYMDGCFDMMHYGHCNALRQARAL-GDQLVVGVVSDAEIIANKGPPVTPLHERMIMVNAVK--W-  114 (307)
Q Consensus        39 ~~~~~~~~~~~~~~~V~~~G~FD~lH~GH~~lL~qAk~~-gd~LiVgV~sD~~i~~~Kg~pi~s~eER~~ll~~~k--~-  114 (307)
                      .++...++..+.. +|++.=+++++|.||..++++|.+. ++.|+|  ++  .+-..| +-=.+.+-|++.++.+.  + 
T Consensus       179 ~e~r~~~~~~gw~-~v~afqtrnP~Hr~H~~l~~~a~~~~~~~llv--~p--l~g~~k-~~di~~~~R~~~~~~~~~~~p  252 (573)
T 1m8p_A          179 AELRVHFDKLGWS-RVVAFQTRNPMHRAHRELTVRAARSRQANVLI--HP--VVGLTK-PGDIDHFTRVRAYQALLPRYP  252 (573)
T ss_dssp             HHHHHHHHHTTCC-SEEEECCSSCCCHHHHHHHHHHHHHTTCEEEE--CC--BCCCCC-TTCHHHHHHHHHHHHHGGGSS
T ss_pred             HHHHHHHHHcCCC-eEEEEeeCCCcchhhHHHHHHHHHhcCCcEEE--Ee--CCCCCC-CCCCCHHHHHHHHHHHHHhCC
Confidence            3344444444444 4788999999999999999999865 776664  32  111112 23367899999888852  1 


Q ss_pred             ccEEEEc-CCCc--c---cHHHHHH-HHHhcCccEEEEcCCCC
Q 021802          115 VDEVISD-APYA--I---TKDFMKK-LFDEYNIDYIIHGDDPC  150 (307)
Q Consensus       115 VD~Vv~~-~py~--~---t~dfle~-ll~~l~~d~VV~GdD~~  150 (307)
                      -+.+++. .|+.  +   .+.-+.. +.+.++|..+++|-|+.
T Consensus       253 ~~~v~l~~~p~~m~~agprea~~ha~ir~n~G~th~ivgrdha  295 (573)
T 1m8p_A          253 NGMAVLGLLGLAMRMGGPREAIWHAIIRKNHGATHFIVGRDHA  295 (573)
T ss_dssp             TTSEEECBBCCCCCCCHHHHHHHHHHHHHHHTCSEEEECTTTT
T ss_pred             CCcEEEEecCchhhccCchHHHHHHHHHHHCCCCeEEECCCCC
Confidence            2444441 2221  1   1223333 44569999999998875

>3uk2_A Pantothenate synthetase; AMP, structural genomics, seattle S genomics center for infectious disease, ssgcid, ligase; HET: AMP; 2.25A {Burkholderia thailandensis} SCOP: c.26.1.0

Probab=89.22  E-value=0.34  Score=44.95  Aligned_cols=39  Identities=26%  Similarity=0.578  Sum_probs=33.1

Q ss_pred             CCeEEEEeCcccccCHHHHHHHHHHHhCCCEEEEEEeCcc
Q 021802          248 DARIIYIDGAFDLFHAGHVEILRIARGLGDFLLVGIHNDQ  287 (307)
Q Consensus       248 ~~~~v~~~G~FDl~H~GHi~~L~~a~~~g~~liVgv~~D~  287 (307)
                      +++|++|+ +..-+|.||..++++|++.+|.+||.+.-+.
T Consensus        21 g~~ig~VP-TMG~LH~GH~sLi~~A~~~~d~vVvSifvnP   59 (283)
T 3uk2_A           21 QNRTAFVP-TMGNLHEGHLSLMRLARQHGDPVVASIFVNR   59 (283)
T ss_dssp             CSSCEEEE-ECSSCCHHHHHHHHHHHTTCSSEEEEECCCG
T ss_pred             CCeEEEEC-CCCcccHHHHHHHHHHHHhCCEEEEEEcCCH
Confidence            45677764 7778999999999999999999999997664

>1v47_A ATP sulfurylase; product binding complex, zinc, riken structural genomics/proteomics initiative, RSGI, structural genomics, transferase; HET: ADX; 2.49A {Thermus thermophilus} SCOP: b.122.1.3 c.26.1.5

Probab=81.60  E-value=0.83  Score=43.46  Aligned_cols=31  Identities=23%  Similarity=0.217  Sum_probs=26.7

Q ss_pred             EEEeCcccccCHHHHHHHHHHHhCCCEEEEE
Q 021802          252 IYIDGAFDLFHAGHVEILRIARGLGDFLLVG  282 (307)
Q Consensus       252 v~~~G~FDl~H~GHi~~L~~a~~~g~~liVg  282 (307)
                      |+.-|+||++|.||..+.++|.+.+|.|++-
T Consensus       158 VvafqTrNPiHrgH~~l~~~ale~~d~vll~  188 (349)
T 1v47_A          158 VVAFQTRNAPHRAHEYLIRLGLELADGVLVH  188 (349)
T ss_dssp             EEEEEESSCCCHHHHHHHHHHHHHSSEEEEE
T ss_pred             EEEeecCCCCchHHHHHHHHHHHhCCcEEEE
Confidence            4558999999999999999999888877663

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	307
d1coza_	126	c.26.1.2 (A:) CTP:glycerol-3-phosphate cytidylyltr	2e-21
d1coza_	126	c.26.1.2 (A:) CTP:glycerol-3-phosphate cytidylyltr	9e-07
d1lw7a1	163	c.26.1.3 (A:57-219) Transcriptional regulator NadR	9e-12
d1lw7a1	163	c.26.1.3 (A:57-219) Transcriptional regulator NadR	1e-04
d1f9aa_	164	c.26.1.3 (A:) Nicotinamide mononucleotide (NMN) ad	7e-05
d1ej2a_	167	c.26.1.3 (A:) Nicotinamide mononucleotide (NMN) ad	5e-04
d1kr2a_	271	c.26.1.3 (A:) Nicotinamide mononucleotide (NMN) ad	0.001

>d1coza_ c.26.1.2 (A:) CTP:glycerol-3-phosphate cytidylyltransferase {Bacillus subtilis [TaxId: 1423]} Length = 126

class: Alpha and beta proteins (a/b)
fold: Adenine nucleotide alpha hydrolase-like
superfamily: Nucleotidylyl transferase
family: Cytidylyltransferase
domain: CTP:glycerol-3-phosphate cytidylyltransferase
species: Bacillus subtilis [TaxId: 1423]

 Score = 85.7 bits (211), Expect = 2e-21
 Identities = 35/134 (26%), Positives = 62/134 (46%), Gaps = 10/134 (7%)

Query: 53  RVYMDGCFDMMHYGHCNALRQARALGDQLVVGVVSDAEIIANKGPPVTPLHERMIMVNAV 112
           +V   G FD++H+GH   L +A+ LGD LVV + +D   +  +         R +++  +
Sbjct: 3   KVITYGTFDLLHWGHIKLLERAKQLGDYLVVAISTDEFNLQKQKKAYHSYEHRKLILETI 62

Query: 113 KWVDEVISDAPYAITKDFMKKLFDEYNIDYIIHGDDPCVLPDGTDAYELAKKAGRYKQIK 172
           ++VDEV          +  K+   ++NID  + G       D    ++  K       + 
Sbjct: 63  RYVDEV----IPEKNWEQKKQDIIDHNIDVFVMG------DDWEGKFDFLKDQCEVVYLP 112

Query: 173 RTEGVSSTDIVGRM 186
           RTEG+S+T I   +
Sbjct: 113 RTEGISTTKIKEEI 126

>d1coza_ c.26.1.2 (A:) CTP:glycerol-3-phosphate cytidylyltransferase {Bacillus subtilis [TaxId: 1423]} Length = 126

class: Alpha and beta proteins (a/b)
fold: Adenine nucleotide alpha hydrolase-like
superfamily: Nucleotidylyl transferase
family: Cytidylyltransferase
domain: CTP:glycerol-3-phosphate cytidylyltransferase
species: Bacillus subtilis [TaxId: 1423]

 Score = 44.9 bits (105), Expect = 9e-07
 Identities = 16/37 (43%), Positives = 24/37 (64%)

Query: 250 RIIYIDGAFDLFHAGHVEILRIARGLGDFLLVGIHND 286
           + +   G FDL H GH+++L  A+ LGD+L+V I  D
Sbjct: 2   KKVITYGTFDLLHWGHIKLLERAKQLGDYLVVAISTD 38

>d1lw7a1 c.26.1.3 (A:57-219) Transcriptional regulator NadR, NMN-adenylyltransferase domain {Haemophilus influenzae [TaxId: 727]} Length = 163

class: Alpha and beta proteins (a/b)
fold: Adenine nucleotide alpha hydrolase-like
superfamily: Nucleotidylyl transferase
family: Adenylyltransferase
domain: Transcriptional regulator NadR, NMN-adenylyltransferase domain
species: Haemophilus influenzae [TaxId: 727]

 Score = 60.2 bits (145), Expect = 9e-12
 Identities = 25/151 (16%), Positives = 43/151 (28%), Gaps = 18/151 (11%)

Query: 49  KKPVRVYMDGCFDMMHYGHCNALRQARALGDQLVVGVVSDAEIIANKGP-----PVTPLH 103
           +K V V   G F  +H GH N + +A +  D+L V V SD               +  + 
Sbjct: 1   EKKVGVIF-GKFYPVHTGHINMIYEAFSKVDELHVIVCSDTVRDLKLFYDSKMKRMPTVQ 59

Query: 104 ERMIMVNAVKWVDEVI--------SDAPYAITKDFMKKLFDEYNIDYIIHGDDPCVLPDG 155
           +R+  +  +    +             P             +                + 
Sbjct: 60  DRLRWMQQIFKYQKNQIFIHHLVEDGIPSYPNGWQSWSEAVKTLFHEKHFEPSIVFSSEP 119

Query: 156 TDAYELAKKAGRYKQI----KRTEGVSSTDI 182
            D     K  G    +    +    VS+T I
Sbjct: 120 QDKAPYEKYLGLEVSLVDPDRTFFNVSATKI 150

>d1lw7a1 c.26.1.3 (A:57-219) Transcriptional regulator NadR, NMN-adenylyltransferase domain {Haemophilus influenzae [TaxId: 727]} Length = 163

class: Alpha and beta proteins (a/b)
fold: Adenine nucleotide alpha hydrolase-like
superfamily: Nucleotidylyl transferase
family: Adenylyltransferase
domain: Transcriptional regulator NadR, NMN-adenylyltransferase domain
species: Haemophilus influenzae [TaxId: 727]

 Score = 39.4 bits (91), Expect = 1e-04
 Identities = 15/56 (26%), Positives = 24/56 (42%)

Query: 250 RIIYIDGAFDLFHAGHVEILRIARGLGDFLLVGIHNDQTVRLKNPSVSFILLDFTL 305
           ++  I G F   H GH+ ++  A    D L V + +D    LK    S +    T+
Sbjct: 3   KVGVIFGKFYPVHTGHINMIYEAFSKVDELHVIVCSDTVRDLKLFYDSKMKRMPTV 58

>d1f9aa_ c.26.1.3 (A:) Nicotinamide mononucleotide (NMN) adenylyltransferase {Archaeon Methanococcus jannaschii [TaxId: 2190]} Length = 164

class: Alpha and beta proteins (a/b)
fold: Adenine nucleotide alpha hydrolase-like
superfamily: Nucleotidylyl transferase
family: Adenylyltransferase
domain: Nicotinamide mononucleotide (NMN) adenylyltransferase
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

 Score = 40.2 bits (93), Expect = 7e-05
 Identities = 21/142 (14%), Positives = 45/142 (31%), Gaps = 14/142 (9%)

Query: 53  RVYMDGCFDMMHYGHCNALRQARALGDQLVVGVVSDAEIIANKGPPVTPLHERMIMVNAV 112
           R ++ G F   H GH   +++     D++++G+ S              L         +
Sbjct: 2   RGFIIGRFQPFHKGHLEVIKKIAEEVDEIIIGIGSA--------QKSHTLENPFTAGERI 53

Query: 113 KWVDEVISDAPYAITKDFMKKLFDEYNIDYIIHGDDP--CVLPDGTDAYELAKKAGRYKQ 170
             + + + D         +K +         +    P   ++  G     +  +   Y+ 
Sbjct: 54  LMITQSLKDYDLTYYPIPIKDIEFNSIWVSYVESLTPPFDIVYSGNPLVRVLFEERGYEV 113

Query: 171 I----KRTEGVSSTDIVGRMLL 188
                   +  S T+I  RML 
Sbjct: 114 KRPEMFNRKEYSGTEIRRRMLN 135

>d1ej2a_ c.26.1.3 (A:) Nicotinamide mononucleotide (NMN) adenylyltransferase {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} Length = 167

class: Alpha and beta proteins (a/b)
fold: Adenine nucleotide alpha hydrolase-like
superfamily: Nucleotidylyl transferase
family: Adenylyltransferase
domain: Nicotinamide mononucleotide (NMN) adenylyltransferase
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

 Score = 37.9 bits (87), Expect = 5e-04
 Identities = 23/135 (17%), Positives = 43/135 (31%), Gaps = 7/135 (5%)

Query: 58  GCFDMMHYGHCNALRQARALGDQLVVGVVSDAEIIANKGPPVTPLHERMIMVNAVKWVDE 117
           G     H GH   ++      D+L++ + S A++  +   P T     M++  A+     
Sbjct: 7   GRMQPFHRGHLQVIKSILEEVDELIICIGS-AQLSHSIRDPFTAGERVMMLTKALSENGI 65

Query: 118 VISDAPYAITKDFMKKLFDEYNIDYIIHGDDPCVLPDGTDAYELAKKAGRYKQIKRT--- 174
             S       +D         +I  +    D      G    +       Y+        
Sbjct: 66  PASRYYIIPVQDIECNALWVGHIKMLTPPFDRVY--SGNPLVQRLFSEDGYEVTAPPLFY 123

Query: 175 -EGVSSTDIVGRMLL 188
            +  S T++  RML 
Sbjct: 124 RDRYSGTEVRRRMLD 138

>d1kr2a_ c.26.1.3 (A:) Nicotinamide mononucleotide (NMN) adenylyltransferase {Human (Homo sapiens) [TaxId: 9606]} Length = 271

class: Alpha and beta proteins (a/b)
fold: Adenine nucleotide alpha hydrolase-like
superfamily: Nucleotidylyl transferase
family: Adenylyltransferase
domain: Nicotinamide mononucleotide (NMN) adenylyltransferase
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.5 bits (86), Expect = 0.001
 Identities = 17/109 (15%), Positives = 32/109 (29%), Gaps = 11/109 (10%)

Query: 48  KKKPVRVYMDGCFDMMHYGHCNALRQARALGDQLVVGVVSDAEIIANKGPP----VTPLH 103
           +K  V +   G F+ +   H      A+   +      V    I           + P +
Sbjct: 1   EKTEVVLLACGSFNPITNMHLRLFELAKDYMNGTGRYTVVKGIISPVGDAYKKKGLIPAY 60

Query: 104 ERMIMVN-AVKWVDEV-ISD-----APYAITKDFMKKLFDEYNIDYIIH 145
            R+IM   A K    V +         +  T   ++   ++       H
Sbjct: 61  HRVIMAELATKNSKWVEVDTWESLQKEWKETLKVLRHHQEKLEASDCDH 109

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	307
d1coza_	126	CTP:glycerol-3-phosphate cytidylyltransferase {Bac	99.97
d1mrza2	157	FMN adenylyltransferase domain of bifunctional FAD	99.85
d1coza_	126	CTP:glycerol-3-phosphate cytidylyltransferase {Bac	99.47
d1f9aa_	164	Nicotinamide mononucleotide (NMN) adenylyltransfer	99.44
d1lw7a1	163	Transcriptional regulator NadR, NMN-adenylyltransf	99.43
d1ej2a_	167	Nicotinamide mononucleotide (NMN) adenylyltransfer	99.35
d1kr2a_	271	Nicotinamide mononucleotide (NMN) adenylyltransfer	99.22
d1qjca_	157	Phosphopantetheine adenylyltransferase {Escherichi	99.21
d1od6a_	160	Phosphopantetheine adenylyltransferase {Thermus th	99.19
d1tfua_	157	Phosphopantetheine adenylyltransferase {Mycobacter	99.15
d1o6ba_	163	Phosphopantetheine adenylyltransferase {Bacillus s	99.11
d1nuua_	233	Cytosolic NMN/NAMN adenylyltransferase {Human (Hom	99.09
d1jhda2	223	ATP sulfurylase catalytic domain {Sulfur-oxidizing	99.06
d1k4ma_	213	Nicotinamide mononucleotide (NMN) adenylyltransfer	99.04
d1kama_	189	Nicotinamide mononucleotide (NMN) adenylyltransfer	99.03
d1vlha_	157	Phosphopantetheine adenylyltransferase {Thermotoga	99.01
d1lw7a1	163	Transcriptional regulator NadR, NMN-adenylyltransf	98.56
d1f9aa_	164	Nicotinamide mononucleotide (NMN) adenylyltransfer	98.29
d1ej2a_	167	Nicotinamide mononucleotide (NMN) adenylyltransfer	98.2
d1tfua_	157	Phosphopantetheine adenylyltransferase {Mycobacter	98.14
d1qjca_	157	Phosphopantetheine adenylyltransferase {Escherichi	98.11
d1od6a_	160	Phosphopantetheine adenylyltransferase {Thermus th	98.06
d1vlha_	157	Phosphopantetheine adenylyltransferase {Thermotoga	97.95
d1o6ba_	163	Phosphopantetheine adenylyltransferase {Bacillus s	97.93
d1kama_	189	Nicotinamide mononucleotide (NMN) adenylyltransfer	97.77
d1k4ma_	213	Nicotinamide mononucleotide (NMN) adenylyltransfer	97.04
d1v47a2	214	ATP sulfurylase catalytic domain {Thermus thermoph	96.9
d1g8fa2	221	ATP sulfurylase catalytic domain {Baker's yeast (S	96.54
d1x6va2	235	ATP sulfurylase catalytic domain {Human (Homo sapi	96.17
d1v8fa_	276	Pantothenate synthetase (Pantoate-beta-alanine lig	95.96
d1nuua_	233	Cytosolic NMN/NAMN adenylyltransferase {Human (Hom	95.62
d1ihoa_	282	Pantothenate synthetase (Pantoate-beta-alanine lig	95.14
d1kr2a_	271	Nicotinamide mononucleotide (NMN) adenylyltransfer	95.01
d1jhda2	223	ATP sulfurylase catalytic domain {Sulfur-oxidizing	94.06
d1mrza2	157	FMN adenylyltransferase domain of bifunctional FAD	94.05
d2a84a1	286	Pantothenate synthetase (Pantoate-beta-alanine lig	93.89
d1v8fa_	276	Pantothenate synthetase (Pantoate-beta-alanine lig	91.68
d1ihoa_	282	Pantothenate synthetase (Pantoate-beta-alanine lig	91.33
d2a84a1	286	Pantothenate synthetase (Pantoate-beta-alanine lig	89.53

>d1coza_ c.26.1.2 (A:) CTP:glycerol-3-phosphate cytidylyltransferase {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: Adenine nucleotide alpha hydrolase-like
superfamily: Nucleotidylyl transferase
family: Cytidylyltransferase
domain: CTP:glycerol-3-phosphate cytidylyltransferase
species: Bacillus subtilis [TaxId: 1423]

Probab=99.97  E-value=8.7e-31  Score=215.36  Aligned_cols=125  Identities=30%  Similarity=0.501  Sum_probs=109.8

Q ss_pred             eEEEEecccCcCCHHHHHHHHHHHHcCCeEEEEEeCChhhhhcCCCCCCCHHHHHHHHHHccCccEEEEcCCCcccHHHH
Q 021802           52 VRVYMDGCFDMMHYGHCNALRQARALGDQLVVGVVSDAEIIANKGPPVTPLHERMIMVNAVKWVDEVISDAPYAITKDFM  131 (307)
Q Consensus        52 ~~V~~~G~FD~lH~GH~~lL~qAk~~gd~LiVgV~sD~~i~~~Kg~pi~s~eER~~ll~~~k~VD~Vv~~~py~~t~dfl  131 (307)
                      ++|++.|+||++|.||+++|++|+++||+|+||+++|+.+...|++|++|.+||++++++|+|||+|++..|+..+.+++
T Consensus         2 k~V~~~G~FD~lH~GH~~~l~~Ak~~gd~liV~v~sD~~~~~~k~~pi~~~~eR~~~l~~~~~Vd~v~~~~~~~~~~~~i   81 (126)
T d1coza_           2 KKVITYGTFDLLHWGHIKLLERAKQLGDYLVVAISTDEFNLQKQKKAYHSYEHRKLILETIRYVDEVIPEKNWEQKKQDI   81 (126)
T ss_dssp             CEEEEEECCCSCCHHHHHHHHHHHTTSSEEEEEEECHHHHHHHTCCCSSCHHHHHHHHTTBTTCCEEEEECCSTTHHHHH
T ss_pred             cEEEEeeEeCCCCHHHHHHHHHHHhhCceeeeeeeccchhhhccCcccCCHHHHHHHhhhhcccceeeecccccccHhhh
Confidence            57999999999999999999999999999999999999887777799999999999999999999999977765444444


Q ss_pred             HHHHHhcCccEEEEcCCCCcCCCCCchHHHHHhCCEEEEcCCCCCCCHHHHHHHH
Q 021802          132 KKLFDEYNIDYIIHGDDPCVLPDGTDAYELAKKAGRYKQIKRTEGVSSTDIVGRM  186 (307)
Q Consensus       132 e~ll~~l~~d~VV~GdD~~fg~~g~d~y~~lk~~g~v~vv~rt~~VSST~Ir~rI  186 (307)
                          .+++||++++|+||..      .+...+..+++..+++++++|||.||+||
T Consensus        82 ----~~~~~d~~v~G~D~~~------~~~~~~~~~~~i~~~~~~~iSST~i~~~I  126 (126)
T d1coza_          82 ----IDHNIDVFVMGDDWEG------KFDFLKDQCEVVYLPRTEGISTTKIKEEI  126 (126)
T ss_dssp             ----HHTTCSEEEEEGGGTT------TTGGGTTTSEEEEECCCTTCCHHHHHHTC
T ss_pred             ----hccCCCEeeecccccc------chHHHHcCCEEEEECCCCCccHHHHHHhC
Confidence                5689999999999752      23445678899999999999999999975

>d1mrza2 c.26.1.3 (A:2-158) FMN adenylyltransferase domain of bifunctional FAD synthetase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: Adenine nucleotide alpha hydrolase-like
superfamily: Nucleotidylyl transferase
family: Adenylyltransferase
domain: FMN adenylyltransferase domain of bifunctional FAD synthetase
species: Thermotoga maritima [TaxId: 2336]

Probab=99.85  E-value=1.6e-21  Score=166.01  Aligned_cols=130  Identities=19%  Similarity=0.259  Sum_probs=102.9

Q ss_pred             EEEecccCcCCHHHHHHHHHHHHcC-----CeEEEEEeCChhhhhcCC-CCCCCHHHHHHHHHHccCccEEEEcCCCc--
Q 021802           54 VYMDGCFDMMHYGHCNALRQARALG-----DQLVVGVVSDAEIIANKG-PPVTPLHERMIMVNAVKWVDEVISDAPYA--  125 (307)
Q Consensus        54 V~~~G~FD~lH~GH~~lL~qAk~~g-----d~LiVgV~sD~~i~~~Kg-~pi~s~eER~~ll~~~k~VD~Vv~~~py~--  125 (307)
                      |+++|+|||+|.||+++|++|++.+     ..+++.+.++|.....+. +++++.++|.++++.+ ++|.++.   |.  
T Consensus         1 VvtiG~FDGvH~GHq~li~~~~~~a~~~~~~~~v~tf~~~p~~~~~~~~~~l~~~~~k~~~l~~~-g~~~~l~---f~~~   76 (157)
T d1mrza2           1 VVSIGVFDGVHIGHQKVLRTMKEIAFFRKDDSLIYTISYPPEYFLPDFPGLLMTVESRVEMLSRY-ARTVVLD---FFRI   76 (157)
T ss_dssp             CEEEECCTTCCHHHHHHHHHHHHHHHHHTCCCEEEEESSCGGGGSTTCCCBSSCHHHHHHHHTTT-SCEEEEC---HHHH
T ss_pred             CEEEEcccchhHHHHHHHHHHHHHHHHcCCCceEeecCCCchheEeccccccccHHHhhhhhhcc-cceeeeh---hhhH
Confidence            6899999999999999999998864     346667766776543333 5799999999999998 6776553   32  


Q ss_pred             ---ccHHHHHHHHHhcCccEEEEcCCCCcCCCCCchHHHHHhCC-EEEEcCCC----CCCCHHHHHHHHHhh
Q 021802          126 ---ITKDFMKKLFDEYNIDYIIHGDDPCVLPDGTDAYELAKKAG-RYKQIKRT----EGVSSTDIVGRMLLC  189 (307)
Q Consensus       126 ---~t~dfle~ll~~l~~d~VV~GdD~~fg~~g~d~y~~lk~~g-~v~vv~rt----~~VSST~Ir~rIl~~  189 (307)
                         .+++|+++++  .+++.||+|+||+||++++++.+.+++.| ++.+++..    +.||||.||+.|...
T Consensus        77 ~~ls~~~Fi~~~l--~~~~~ivvG~Df~FG~~r~G~~~~Lk~~g~~v~~i~~~~~~~~~ISST~IR~~l~~G  146 (157)
T d1mrza2          77 KDLTPEGFVERYL--SGVSAVVVGRDFRFGKNASGNASFLRKKGVEVYEIEDVVVQGKRVSSSLIRNLVQEG  146 (157)
T ss_dssp             TTCCHHHHHHHHC--TTCCEEEEETTCCBSGGGCBCHHHHHHTTCEEEEECCCEETTEECCHHHHHHHHHTT
T ss_pred             hhhhhhHHHHHHh--hcCcEEEEecCcccccccccchhhhccceeEEEeeccEeeCCcEEcHHHHHHHHHcC
Confidence               2478998765  47899999999999999998888888764 67766653    569999999998754

>d1coza_ c.26.1.2 (A:) CTP:glycerol-3-phosphate cytidylyltransferase {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: Adenine nucleotide alpha hydrolase-like
superfamily: Nucleotidylyl transferase
family: Cytidylyltransferase
domain: CTP:glycerol-3-phosphate cytidylyltransferase
species: Bacillus subtilis [TaxId: 1423]

Probab=99.47  E-value=1.3e-14  Score=117.80  Aligned_cols=50  Identities=36%  Similarity=0.616  Sum_probs=44.2

Q ss_pred             CeEEEEeCcccccCHHHHHHHHHHHhCCCEEEEEEeCcccccc--cCCCccc
Q 021802          249 ARIIYIDGAFDLFHAGHVEILRIARGLGDFLLVGIHNDQTVRL--KNPSVSF  298 (307)
Q Consensus       249 ~~~v~~~G~FDl~H~GHi~~L~~a~~~g~~liVgv~~D~~v~~--~~~~~~~  298 (307)
                      +|+|++.|+||+||.||+++|++|+++||+|||||++|+.+.+  .+|..|+
T Consensus         1 Mk~V~~~G~FD~lH~GH~~~l~~Ak~~gd~liV~v~sD~~~~~~k~~pi~~~   52 (126)
T d1coza_           1 MKKVITYGTFDLLHWGHIKLLERAKQLGDYLVVAISTDEFNLQKQKKAYHSY   52 (126)
T ss_dssp             CCEEEEEECCCSCCHHHHHHHHHHHTTSSEEEEEEECHHHHHHHTCCCSSCH
T ss_pred             CcEEEEeeEeCCCCHHHHHHHHHHHhhCceeeeeeeccchhhhccCcccCCH
Confidence            4789999999999999999999999999999999999998864  4555554

>d1f9aa_ c.26.1.3 (A:) Nicotinamide mononucleotide (NMN) adenylyltransferase {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: Adenine nucleotide alpha hydrolase-like
superfamily: Nucleotidylyl transferase
family: Adenylyltransferase
domain: Nicotinamide mononucleotide (NMN) adenylyltransferase
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=99.44  E-value=7.8e-13  Score=108.81  Aligned_cols=128  Identities=19%  Similarity=0.203  Sum_probs=77.4

Q ss_pred             EEEEecccCcCCHHHHHHHHHHHHcCCeEEEEEeCChhhhhcCCCCCCCHHHHHHHHHH-ccCccEE---EEcCCCcccH
Q 021802           53 RVYMDGCFDMMHYGHCNALRQARALGDQLVVGVVSDAEIIANKGPPVTPLHERMIMVNA-VKWVDEV---ISDAPYAITK  128 (307)
Q Consensus        53 ~V~~~G~FD~lH~GH~~lL~qAk~~gd~LiVgV~sD~~i~~~Kg~pi~s~eER~~ll~~-~k~VD~V---v~~~py~~t~  128 (307)
                      ++++.|+||++|.||+.++++|++.+|+++|.+.+....  .+..+.++.+||.++++. +...+..   .....+..+.
T Consensus         2 kgl~~G~FdP~H~GH~~li~~a~~~~d~v~v~i~~~~~~--~~~~~~~s~~~R~~~i~~~~~~~~~~~~~~~~~~~~~~~   79 (164)
T d1f9aa_           2 RGFIIGRFQPFHKGHLEVIKKIAEEVDEIIIGIGSAQKS--HTLENPFTAGERILMITQSLKDYDLTYYPIPIKDIEFNS   79 (164)
T ss_dssp             EEEEEECCTTCCHHHHHHHHHHTTTCSEEEEEECSTTCC--SSSSCCSCHHHHHHHHHHHHTTSSCEEEEEECCCCSCGG
T ss_pred             EEEEecccCCCCHHHHHHHHHHHHhCCCeEEEecCCccc--cCcCCCCCHHHHHHHHHHHhhhcCcceeeccccccchHH
Confidence            388999999999999999999999999999998765421  122567899999999987 3332222   1112222233


Q ss_pred             HHHHHHHHhcCccEEEEcCCCCcCCCCCchHHHHHhC-CEEEEcCC--CCCCCHHHHHHHHHhh
Q 021802          129 DFMKKLFDEYNIDYIIHGDDPCVLPDGTDAYELAKKA-GRYKQIKR--TEGVSSTDIVGRMLLC  189 (307)
Q Consensus       129 dfle~ll~~l~~d~VV~GdD~~fg~~g~d~y~~lk~~-g~v~vv~r--t~~VSST~Ir~rIl~~  189 (307)
                      .+.+.+ +.+.+++.+.     ++ ++.......+.. ..+..++.  ..+||||+||++|...
T Consensus        80 ~~~~~~-~~~~~~~~~~-----~~-~~~~~~~~~~~~~~~v~~~~~~~~~~ISST~IR~~i~~g  136 (164)
T d1f9aa_          80 IWVSYV-ESLTPPFDIV-----YS-GNPLVRVLFEERGYEVKRPEMFNRKEYSGTEIRRRMLNG  136 (164)
T ss_dssp             GHHHHH-HHHSCCCSEE-----EC-CCHHHHHHHHHTTCEEECCCCCSTTTSSHHHHHHHHHHT
T ss_pred             HHHHHH-HhhcCceEEE-----Ec-ChHHHHHHHHhcCCeEEEecCcCCCCcCHHHHHHHHHcC
Confidence            333322 2233332221     11 111222233333 35554443  3579999999998754

>d1lw7a1 c.26.1.3 (A:57-219) Transcriptional regulator NadR, NMN-adenylyltransferase domain {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: Adenine nucleotide alpha hydrolase-like
superfamily: Nucleotidylyl transferase
family: Adenylyltransferase
domain: Transcriptional regulator NadR, NMN-adenylyltransferase domain
species: Haemophilus influenzae [TaxId: 727]

Probab=99.43  E-value=1e-13  Score=112.61  Aligned_cols=64  Identities=22%  Similarity=0.185  Sum_probs=53.1

Q ss_pred             CeEEEEecccCcCCHHHHHHHHHHHHcCCeEEEEEeCChhh----hhcCC-CCCCCHHHHHHHHHHccC
Q 021802           51 PVRVYMDGCFDMMHYGHCNALRQARALGDQLVVGVVSDAEI----IANKG-PPVTPLHERMIMVNAVKW  114 (307)
Q Consensus        51 ~~~V~~~G~FD~lH~GH~~lL~qAk~~gd~LiVgV~sD~~i----~~~Kg-~pi~s~eER~~ll~~~k~  114 (307)
                      ++++++.|+||++|.||+.++++|++.+|+++|++.+++..    ...+. .++.+.++|.++++.+..
T Consensus         2 kkigl~~G~FdP~H~GH~~l~~~a~~~~d~v~v~i~~~~~~~~~~~~~~~~~~~~~~~~R~~~l~~~~~   70 (163)
T d1lw7a1           2 KKVGVIFGKFYPVHTGHINMIYEAFSKVDELHVIVCSDTVRDLKLFYDSKMKRMPTVQDRLRWMQQIFK   70 (163)
T ss_dssp             CCEEEEEECCSSCCHHHHHHHHHHHTTCSEEEEEEEECHHHHHHHHHHTTCSSCCCHHHHHHHHHHHTS
T ss_pred             CeEEEEeeeCCCCCHHHHHHHHHHHHhCCccEEEEECCCCccccccccccccCCCCHHHHHHHHHHhCc
Confidence            45689999999999999999999999999999999887632    11222 688999999999988653

>d1ej2a_ c.26.1.3 (A:) Nicotinamide mononucleotide (NMN) adenylyltransferase {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: Alpha and beta proteins (a/b)
fold: Adenine nucleotide alpha hydrolase-like
superfamily: Nucleotidylyl transferase
family: Adenylyltransferase
domain: Nicotinamide mononucleotide (NMN) adenylyltransferase
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=99.35  E-value=2.9e-12  Score=106.00  Aligned_cols=127  Identities=16%  Similarity=0.098  Sum_probs=77.1

Q ss_pred             EEEEecccCcCCHHHHHHHHHHHHcCCeEEEEEeCChhhhhcCCCCCCCHHHHHHHHHHc-c--C---ccEEEEcCC-Cc
Q 021802           53 RVYMDGCFDMMHYGHCNALRQARALGDQLVVGVVSDAEIIANKGPPVTPLHERMIMVNAV-K--W---VDEVISDAP-YA  125 (307)
Q Consensus        53 ~V~~~G~FD~lH~GH~~lL~qAk~~gd~LiVgV~sD~~i~~~Kg~pi~s~eER~~ll~~~-k--~---VD~Vv~~~p-y~  125 (307)
                      ++++.|+||++|.||+.++++|.+.+|+++|.|.+....  .+.+..++.+||++|++.. +  +   +.......+ +.
T Consensus         2 kgi~~G~FdP~H~GH~~ii~~a~~~~d~v~v~i~~~~~~--~~~~~~~~~~~R~~mi~~~~~~~~~~~~~~~~~~~~~~~   79 (167)
T d1ej2a_           2 RGLLVGRMQPFHRGHLQVIKSILEEVDELIICIGSAQLS--HSIRDPFTAGERVMMLTKALSENGIPASRYYIIPVQDIE   79 (167)
T ss_dssp             EEEEEECCTTCCHHHHHHHHHHTTTCSEEEEEECSTTCC--SSSSSCSCHHHHHHHHHHHHHHTTCCGGGEEEEECCCCS
T ss_pred             EEEEeeccCCCCHHHHHHHHHHHHHCCceEEEEecCCCC--CCccccccHHHHHHHHHHHHHHcCCCceeEEeccchhhh
Confidence            489999999999999999999999999999999775421  1225778999999999862 1  1   122222122 11


Q ss_pred             ccHHHHHHHHHh-cCccEEEEcCCCCcCCCCCchHHHHHhC-CEEEEcCC--CCCCCHHHHHHHHHhh
Q 021802          126 ITKDFMKKLFDE-YNIDYIIHGDDPCVLPDGTDAYELAKKA-GRYKQIKR--TEGVSSTDIVGRMLLC  189 (307)
Q Consensus       126 ~t~dfle~ll~~-l~~d~VV~GdD~~fg~~g~d~y~~lk~~-g~v~vv~r--t~~VSST~Ir~rIl~~  189 (307)
                      ....+......- .+.+.++.++        .....+.+.. ..+..++.  ...||||+||++|...
T Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~v~~~~~~~~~~ISST~IR~~i~~g  139 (167)
T d1ej2a_          80 CNALWVGHIKMLTPPFDRVYSGN--------PLVQRLFSEDGYEVTAPPLFYRDRYSGTEVRRRMLDD  139 (167)
T ss_dssp             CHHHHHHHHHHHSCCCSEEECCC--------HHHHHHHHHTTCCEECCCCSSTTTSSHHHHHHHHHHT
T ss_pred             hHHHHHHHHheeeeceeEEEcch--------HHHHHHHHcCCCeEEeccccccccccHHHHHHHHHcC
Confidence            222222221111 3344443211        1122333443 34555553  2579999999999754

>d1kr2a_ c.26.1.3 (A:) Nicotinamide mononucleotide (NMN) adenylyltransferase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Adenine nucleotide alpha hydrolase-like
superfamily: Nucleotidylyl transferase
family: Adenylyltransferase
domain: Nicotinamide mononucleotide (NMN) adenylyltransferase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.22  E-value=3e-11  Score=109.24  Aligned_cols=84  Identities=20%  Similarity=0.199  Sum_probs=56.9

Q ss_pred             CeEEEEecccCcCCHHHHHHHHHHHHcC--------CeEEEEEeCChhhhhcCCCCCCCHHHHHHHHHH-ccCccEEEEc
Q 021802           51 PVRVYMDGCFDMMHYGHCNALRQARALG--------DQLVVGVVSDAEIIANKGPPVTPLHERMIMVNA-VKWVDEVISD  121 (307)
Q Consensus        51 ~~~V~~~G~FD~lH~GH~~lL~qAk~~g--------d~LiVgV~sD~~i~~~Kg~pi~s~eER~~ll~~-~k~VD~Vv~~  121 (307)
                      ++.+++.|+||++|.||+.+++.|++..        +.+++..+.++    .+.+.+.+.++|++|++- ++..+.+.++
T Consensus         4 ~~v~l~~GSFdP~H~GHl~ia~~a~~~l~~~~~~~~~~~~~~P~~~~----~~k~~~~s~~~Rl~Ml~la~~~~~~~~vs   79 (271)
T d1kr2a_           4 EVVLLACGSFNPITNMHLRLFELAKDYMNGTGRYTVVKGIISPVGDA----YKKKGLIPAYHRVIMAELATKNSKWVEVD   79 (271)
T ss_dssp             EEEEEEEECCTTCCHHHHHHHHHHHHHHHHTSSEEEEEEEEEECCGG----GCCTTCCCHHHHHHHHHHHTTTCSSEEEC
T ss_pred             cEEEEEccccCcchHHHHHHHHHHHHHHhhccccceeEEEEecCCCC----CcCCCCCCHHHHHHHHHHHHhcCCCEEEe
Confidence            3445889999999999999999988642        34555555544    233578899999999987 5566666652


Q ss_pred             ------CCCcccHHHHHHHHHhc
Q 021802          122 ------APYAITKDFMKKLFDEY  138 (307)
Q Consensus       122 ------~py~~t~dfle~ll~~l  138 (307)
                            ..++.|.+.++.+-+++
T Consensus        80 ~~E~~~~~~syTidTl~~l~~~~  102 (271)
T d1kr2a_          80 TWESLQKEWKETLKVLRHHQEKL  102 (271)
T ss_dssp             CHHHHCSSCCCHHHHHHHHHHHH
T ss_pred             ehhhhcCCCccHHHHHHHHHHHh
Confidence                  22234556665554444

>d1qjca_ c.26.1.3 (A:) Phosphopantetheine adenylyltransferase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Adenine nucleotide alpha hydrolase-like
superfamily: Nucleotidylyl transferase
family: Adenylyltransferase
domain: Phosphopantetheine adenylyltransferase
species: Escherichia coli [TaxId: 562]

Probab=99.21  E-value=5.4e-12  Score=101.97  Aligned_cols=64  Identities=20%  Similarity=0.403  Sum_probs=47.5

Q ss_pred             eEEEEecccCcCCHHHHHHHHHHHHcCCeEEEEEeCChhhhhcCCCCCCCHHHHHHHHHH-ccCccEEEE
Q 021802           52 VRVYMDGCFDMMHYGHCNALRQARALGDQLVVGVVSDAEIIANKGPPVTPLHERMIMVNA-VKWVDEVIS  120 (307)
Q Consensus        52 ~~V~~~G~FD~lH~GH~~lL~qAk~~gd~LiVgV~sD~~i~~~Kg~pi~s~eER~~ll~~-~k~VD~Vv~  120 (307)
                      +++++.|+||++|.||+.++++|.+.+|+++|.+.+.+.   .  ++..+.++|.+++.. ......+..
T Consensus         1 k~AifgGsFdP~H~GHl~li~~a~~~~D~v~v~~~~~~~---~--k~~~~~~~~~~~~~~~~~~~~~~~~   65 (157)
T d1qjca_           1 KRAIYPGTFDPITNGHIDIVTRATQMFDHVILAIAASPS---K--KPMFTLEERVALAQQATAHLGNVEV   65 (157)
T ss_dssp             CEEEEEECCTTCCHHHHHHHHHHHTTSSEEEEEEESCCS---S--CCSSCHHHHHHHHHHHTTTCTTEEE
T ss_pred             CEEEEeeccCCCCHHHHHHHHHHHHhCCEeeecccCccc---c--ccccCHHHHHHHHHHHHHHhhcccc
Confidence            368999999999999999999999999999999987751   2  344555666665544 444444433

>d1od6a_ c.26.1.3 (A:) Phosphopantetheine adenylyltransferase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: Adenine nucleotide alpha hydrolase-like
superfamily: Nucleotidylyl transferase
family: Adenylyltransferase
domain: Phosphopantetheine adenylyltransferase
species: Thermus thermophilus [TaxId: 274]

Probab=99.19  E-value=1.8e-11  Score=99.27  Aligned_cols=55  Identities=24%  Similarity=0.431  Sum_probs=41.6

Q ss_pred             EEEEecccCcCCHHHHHHHHHHHHcCCeEEEEEeCChhhhhcCC-CCCCCHHHHHHHHHH
Q 021802           53 RVYMDGCFDMMHYGHCNALRQARALGDQLVVGVVSDAEIIANKG-PPVTPLHERMIMVNA  111 (307)
Q Consensus        53 ~V~~~G~FD~lH~GH~~lL~qAk~~gd~LiVgV~sD~~i~~~Kg-~pi~s~eER~~ll~~  111 (307)
                      ++++.|+||++|.||++++++|.+.+|+|++++..++.    |. ....+..+|..+...
T Consensus         2 k~ifgGsFdP~H~GHl~ii~~a~~~~D~v~i~~~~~~~----kk~~~~~~~~~~~~~~~~   57 (160)
T d1od6a_           2 HVVYPGSFDPLTNGHLDVIQRASRLFEKVTVAVLENPS----KRGQYLFSAEERLAIIRE   57 (160)
T ss_dssp             EEEEEECCTTCCHHHHHHHHHHHHHSSEEEEEEECC---------CCSSCHHHHHHHHHH
T ss_pred             eEEeeeccCCcCHHHHHHHHHHHHhCCEEEEeccCCCC----ccccccCCHHHHHHHHHh
Confidence            46899999999999999999999999999999888763    33 444555666555444

>d1tfua_ c.26.1.3 (A:) Phosphopantetheine adenylyltransferase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: Adenine nucleotide alpha hydrolase-like
superfamily: Nucleotidylyl transferase
family: Adenylyltransferase
domain: Phosphopantetheine adenylyltransferase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.15  E-value=1.6e-11  Score=99.42  Aligned_cols=38  Identities=26%  Similarity=0.447  Sum_probs=34.8

Q ss_pred             eEEEEecccCcCCHHHHHHHHHHHHcCCeEEEEEeCCh
Q 021802           52 VRVYMDGCFDMMHYGHCNALRQARALGDQLVVGVVSDA   89 (307)
Q Consensus        52 ~~V~~~G~FD~lH~GH~~lL~qAk~~gd~LiVgV~sD~   89 (307)
                      +++++.|+||++|.||++++++|.+.+|.++|.+.+.+
T Consensus         2 ~~Av~~GsFdPiH~GHl~i~~~a~~~~d~~~v~~~~~~   39 (157)
T d1tfua_           2 TGAVCPGSFDPVTLGHVDIFERAAAQFDEVVVAILVNP   39 (157)
T ss_dssp             CEEEEEECCTTCCHHHHHHHHHHHHHSSEEEEEEECCS
T ss_pred             CEeEeCcCCCCCCHHHHHHHHHHHHhcChHHhhccccC
Confidence            47899999999999999999999999999888887765

>d1o6ba_ c.26.1.3 (A:) Phosphopantetheine adenylyltransferase {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: Adenine nucleotide alpha hydrolase-like
superfamily: Nucleotidylyl transferase
family: Adenylyltransferase
domain: Phosphopantetheine adenylyltransferase
species: Bacillus subtilis [TaxId: 1423]

Probab=99.11  E-value=3.8e-11  Score=98.15  Aligned_cols=55  Identities=24%  Similarity=0.452  Sum_probs=47.8

Q ss_pred             EEEEecccCcCCHHHHHHHHHHHHcCCeEEEEEeCChhhhhcCCCCCCCHHHHHHHHHHc
Q 021802           53 RVYMDGCFDMMHYGHCNALRQARALGDQLVVGVVSDAEIIANKGPPVTPLHERMIMVNAV  112 (307)
Q Consensus        53 ~V~~~G~FD~lH~GH~~lL~qAk~~gd~LiVgV~sD~~i~~~Kg~pi~s~eER~~ll~~~  112 (307)
                      ++++.|+|||+|.||+.++++|.+.+|+++|.+...+     +.++.++.++|.+++...
T Consensus         3 IaifgGsFdPiH~GHl~i~~~a~~~~D~v~v~~~~~~-----~~~~~~~~~~r~~~~~~~   57 (163)
T d1o6ba_           3 IAVCPGSFDPVTYGHLDIIKRGAHIFEQVYVCVLNNS-----SKKPLFSVEERCELLREV   57 (163)
T ss_dssp             EEEEEECCTTCCHHHHHHHHHHHHHSSEEEEEECCCC-----SSCCSSCHHHHHHHHHHH
T ss_pred             EEEeccccCCCCHHHHHHHHHHHHhCCEEEEcccccc-----cccccCCHHHHHHHHhhh
Confidence            5899999999999999999999999999998877654     225889999999998774

>d1nuua_ c.26.1.3 (A:) Cytosolic NMN/NAMN adenylyltransferase {Human (Homo sapiens), FKSG76 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Adenine nucleotide alpha hydrolase-like
superfamily: Nucleotidylyl transferase
family: Adenylyltransferase
domain: Cytosolic NMN/NAMN adenylyltransferase
species: Human (Homo sapiens), FKSG76 [TaxId: 9606]

Probab=99.09  E-value=6e-10  Score=97.45  Aligned_cols=134  Identities=16%  Similarity=0.132  Sum_probs=82.1

Q ss_pred             eEEEEecccCcCCHHHHHHHHHHHHcC--Ce---EE---EEEeCChhhhhcCCCCCCCHHHHHHHHHH-ccCccEEEEc-
Q 021802           52 VRVYMDGCFDMMHYGHCNALRQARALG--DQ---LV---VGVVSDAEIIANKGPPVTPLHERMIMVNA-VKWVDEVISD-  121 (307)
Q Consensus        52 ~~V~~~G~FD~lH~GH~~lL~qAk~~g--d~---Li---VgV~sD~~i~~~Kg~pi~s~eER~~ll~~-~k~VD~Vv~~-  121 (307)
                      ..+++.|+||++|.||+.++++|++..  ++   ++   +..+.++    .+.++..+.++|++|++. ++..+.+.++ 
T Consensus         5 ~vl~~~GSFdP~H~GHl~i~~~a~~~~~~~~~~~~~~~~~~p~~~~----~~~~~~~~~~~R~~M~~la~~~~~~~~v~~   80 (233)
T d1nuua_           5 VVLLACGSFNPITNMHLRMFEVARDHLHQTGMYQVIQGIISPVNDT----YGKKDLAASHHRVAMARLALQTSDWIRVDP   80 (233)
T ss_dssp             EEEEEEECCTTCCHHHHHHHHHHHHHHHHHSSEEEEEEEEEECCTT----CSSSCCCCHHHHHHHHHHHGGGCSSEEECC
T ss_pred             EEEEEeeeeCccHHHHHHHHHHHHHHhCcccceeeeeEEEccCCCC----cccCccCCHHHHHHHHHHHHhccCCEEEeh
Confidence            446788999999999999999998863  22   21   2222222    233688999999999976 4444455442 


Q ss_pred             -----CCCcccHHHHHHHHHhcC--------------------cc---EEEEcCCCC-cCCCC---C-chHHHHHhCCEE
Q 021802          122 -----APYAITKDFMKKLFDEYN--------------------ID---YIIHGDDPC-VLPDG---T-DAYELAKKAGRY  168 (307)
Q Consensus       122 -----~py~~t~dfle~ll~~l~--------------------~d---~VV~GdD~~-fg~~g---~-d~y~~lk~~g~v  168 (307)
                           ..++.|.+.++.+.+++.                    ++   ++|+|.|.- ...+|   . ..++.+-+...+
T Consensus        81 ~e~~~~~~s~ti~tl~~l~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~fiiG~D~l~~~~~wk~~~~~~~~~il~~~~~  160 (233)
T d1nuua_          81 WESEQAQWMETVKVLRHHHSKLLRSPPQMEGPDHGKALFSTPAAVPELKLLCGADVLKTFQTPNLWKDAHIQEIVEKFGL  160 (233)
T ss_dssp             HHHHSSSCCCHHHHHHHHHHHHC--------------------CCCEEEEEEEHHHHHHTTSTTTSCHHHHHHHHHHTCE
T ss_pred             HHHhCCCCccHHHHHHHHHHHhcccccccccccccchhccccCCCccEEEEEccchhhhcchhhhhcchhHHHHHhhCcE
Confidence                 223345566655544442                    22   577898832 22233   2 123333344566


Q ss_pred             EEcCCC-----------------------------CCCCHHHHHHHHHhh
Q 021802          169 KQIKRT-----------------------------EGVSSTDIVGRMLLC  189 (307)
Q Consensus       169 ~vv~rt-----------------------------~~VSST~Ir~rIl~~  189 (307)
                      .+++|.                             ..||||+||+++...
T Consensus       161 iv~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ISST~IR~~l~~g  210 (233)
T d1nuua_         161 VCVGRVSHDPKGYIAESPILRMHQHNIHLAKEPVQNEISATYIRRALGQG  210 (233)
T ss_dssp             EEECCTTCCHHHHHHHCHHHHHTGGGEEEECCSCCCCCCHHHHHHHHHTT
T ss_pred             EEEeCCCCchhhhhhhHHHHhhccCCEEEecCCccccCCHHHHHHHHHcC
Confidence            676662                             148999999999654

>d1jhda2 c.26.1.5 (A:174-396) ATP sulfurylase catalytic domain {Sulfur-oxidizing endosymbiont of Riftia pachyptila [TaxId: 35843]}

class: Alpha and beta proteins (a/b)
fold: Adenine nucleotide alpha hydrolase-like
superfamily: Nucleotidylyl transferase
family: ATP sulfurylase catalytic domain
domain: ATP sulfurylase catalytic domain
species: Sulfur-oxidizing endosymbiont of Riftia pachyptila [TaxId: 35843]

Probab=99.06  E-value=1.7e-10  Score=100.71  Aligned_cols=113  Identities=18%  Similarity=0.119  Sum_probs=72.0

Q ss_pred             HHhHhhhcCCCCeEEEEecccCcCCHHHHHHHHHHHHc--CCeEEEEEeCChhhhhcCC-CCCCCHHHHHHHHHH-ccCc
Q 021802           40 RWLQWTRKKKKPVRVYMDGCFDMMHYGHCNALRQARAL--GDQLVVGVVSDAEIIANKG-PPVTPLHERMIMVNA-VKWV  115 (307)
Q Consensus        40 ~~~~~~~~~~~~~~V~~~G~FD~lH~GH~~lL~qAk~~--gd~LiVgV~sD~~i~~~Kg-~pi~s~eER~~ll~~-~k~V  115 (307)
                      ++...+.+.+-. +|+..|+||++|.||+.+.+.|.+.  .|++++.+...+   ..|+ .+..+.++|++|+.. +..-
T Consensus         9 ~~~~~~~~~~~~-~v~~f~TfnP~H~GHl~ia~~a~~~~~ld~v~~iP~~~~---p~K~~~~~~~~~~r~~m~~~a~~~~   84 (223)
T d1jhda2           9 EIRNEIKEHGWS-KVVAFQTRNPMHRAHEELCRMAMESLDADGVVVHMLLGK---LKKGDIPAPVRDAAIRTMAEVYFPP   84 (223)
T ss_dssp             HHHHHHHHHTCS-SEEEEEESSCCCHHHHHHHHHHHHHHTCSEEEEEEEECC---CCTTCCCHHHHHHHHHHHHHHHSCT
T ss_pred             HHHHHHHHCCCC-EEEEeeCCCCCCHHHHHHHHHHHHHhCcCceEEecccCC---CCcCCCccccHHHHHHHHHHhhcCC
Confidence            444445544444 4777899999999999999999986  477777666554   2454 456678899888875 4444


Q ss_pred             cEEEE-----cCCC-cccHHHHHHHHHh-cCccEEEEcCCCC-cCCCCC
Q 021802          116 DEVIS-----DAPY-AITKDFMKKLFDE-YNIDYIIHGDDPC-VLPDGT  156 (307)
Q Consensus       116 D~Vv~-----~~py-~~t~dfle~ll~~-l~~d~VV~GdD~~-fg~~g~  156 (307)
                      +.+.+     ..+. +.+.+.++.+.++ .++.++++|.|.. .+..+.
T Consensus        85 ~~~~is~~E~~~~~~syt~~tl~~l~~~~~~~~~~iiG~D~~~~~~~w~  133 (223)
T d1jhda2          85 NTVMVTGYGFDMLYAGPREAVLHAYFRQNMGATHFIIGRDHAGVGDYYG  133 (223)
T ss_dssp             TCEEEEEEECCCCCCTHHHHHHHHHHHHHTTCSEEEECTTTTCCTTCSC
T ss_pred             CceeeccccccccCCCcHHHHHHHHHHhCCcceEEEEeecccccccCcC
Confidence            44433     1221 2356666665444 4567777777643 444444

>d1k4ma_ c.26.1.3 (A:) Nicotinamide mononucleotide (NMN) adenylyltransferase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Adenine nucleotide alpha hydrolase-like
superfamily: Nucleotidylyl transferase
family: Adenylyltransferase
domain: Nicotinamide mononucleotide (NMN) adenylyltransferase
species: Escherichia coli [TaxId: 562]

Probab=99.04  E-value=6.6e-10  Score=92.54  Aligned_cols=68  Identities=18%  Similarity=0.240  Sum_probs=47.0

Q ss_pred             CCeEEEEecccCcCCHHHHHHHHHHHHcC--CeEEEEEeCChhhhhcCCCCCCCHHHHHHHHHH-ccCccEEEE
Q 021802           50 KPVRVYMDGCFDMMHYGHCNALRQARALG--DQLVVGVVSDAEIIANKGPPVTPLHERMIMVNA-VKWVDEVIS  120 (307)
Q Consensus        50 ~~~~V~~~G~FD~lH~GH~~lL~qAk~~g--d~LiVgV~sD~~i~~~Kg~pi~s~eER~~ll~~-~k~VD~Vv~  120 (307)
                      ++.+++..|+|||+|.||+.++++|++..  |++++.+..++.   .|........+|.+++.. +...+.+..
T Consensus         2 ~~~~AlfgGSFnP~h~GHl~~~~~a~~~~~~d~v~~~p~~~~~---~k~~~~~~~~~~~~~~~~~~~~~~~~~~   72 (213)
T d1k4ma_           2 KSLQALFGGTFDPVHYGHLKPVETLANLIGLTRVTIIPNNVPP---HRPQPEANSVQRKHMLELAIADKPLFTL   72 (213)
T ss_dssp             CCCEEEEEECCTTCCHHHHHHHHHHHHHHTCSCEEEEECSSCT---TSCCCSSCHHHHHHHHHHHHTTCTTEEE
T ss_pred             CccEEEEecCcCcCcHHHHHHHHHHHHHcCCCEEEEEEeCCCc---hhcccccchHHHHHHHHHHhhcccceee
Confidence            45689999999999999999999999874  788888877652   333334444555555444 433344433

>d1kama_ c.26.1.3 (A:) Nicotinamide mononucleotide (NMN) adenylyltransferase {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: Adenine nucleotide alpha hydrolase-like
superfamily: Nucleotidylyl transferase
family: Adenylyltransferase
domain: Nicotinamide mononucleotide (NMN) adenylyltransferase
species: Bacillus subtilis [TaxId: 1423]

Probab=99.03  E-value=9.2e-10  Score=89.95  Aligned_cols=134  Identities=22%  Similarity=0.107  Sum_probs=70.2

Q ss_pred             eEEEEecccCcCCHHHHHHHHHHHHcCCe--EEEEEeCChhhhhcCC-CCCCCHHHHHHHHHHc-cCccEEEEcC-----
Q 021802           52 VRVYMDGCFDMMHYGHCNALRQARALGDQ--LVVGVVSDAEIIANKG-PPVTPLHERMIMVNAV-KWVDEVISDA-----  122 (307)
Q Consensus        52 ~~V~~~G~FD~lH~GH~~lL~qAk~~gd~--LiVgV~sD~~i~~~Kg-~pi~s~eER~~ll~~~-k~VD~Vv~~~-----  122 (307)
                      +++++.|+|||+|.||+.++++|.+.++.  +++.+.+.+.   .+. .+.....+|..+...+ +....+....     
T Consensus         3 kIalfgGSFdP~H~GH~~ii~~a~~~~~~~~V~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~   79 (189)
T d1kama_           3 KIGIFGGTFDPPHNGHLLMANEVLYQAGLDEIWFMPNQIPP---HKQNEDYTDSFHRVEMLKLAIQSNPSFKLELVEMER   79 (189)
T ss_dssp             EEEEEEECCSSCCHHHHHHHHHHHHHTTCSEEEEEECCCC------------CHHHHHHHHHHHHTTCTTEEECCGGGST
T ss_pred             EEEEeccCcCCCCHHHHHHHHHHHHHcCCCEEEEEeccCCc---ccccchhhHHHHHHHHHHhhhccCcceeechhhhcc
Confidence            34799999999999999999999999854  4444433321   122 3455566666665552 2222222210     


Q ss_pred             -CCcccHHHHHHHHHhc--CccEEEEcCCCCc-CCCCCchHHHHHhCCEEEEcCC-----------------CCCCCHHH
Q 021802          123 -PYAITKDFMKKLFDEY--NIDYIIHGDDPCV-LPDGTDAYELAKKAGRYKQIKR-----------------TEGVSSTD  181 (307)
Q Consensus       123 -py~~t~dfle~ll~~l--~~d~VV~GdD~~f-g~~g~d~y~~lk~~g~v~vv~r-----------------t~~VSST~  181 (307)
                       ...++.+.+..+...+  ...+.+.|.|... ...+......+.. ....+.++                 ...||||.
T Consensus        80 ~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ISST~  158 (189)
T d1kama_          80 EGPSYTFDTVSLLKQRYPNDQLFFIIGADMIEYLPKWYKLDELLNL-IQFIGVKRPGFHVETPYPLLFADVPEFEVSSTM  158 (189)
T ss_dssp             TCCCSHHHHHHHHHHHSTTSEEEEEEETTTTTTCCCCHHHHHHHHH-SEEEEEECSSCCCCCSSCCEEEECCCBCCCHHH
T ss_pred             CCcceehhhhhHHhhcCCcchhhhhhhcccccccccchhhhhhhhh-cceeeccccccccccchhhhccccccCcCChHH
Confidence             0112334444333333  2346677777543 3333332233332 22222222                 13599999


Q ss_pred             HHHHHHhh
Q 021802          182 IVGRMLLC  189 (307)
Q Consensus       182 Ir~rIl~~  189 (307)
                      ||+++...
T Consensus       159 IR~~i~~~  166 (189)
T d1kama_         159 IRERFKSK  166 (189)
T ss_dssp             HHHHHHHT
T ss_pred             HHHHHHcC
Confidence            99999754

>d1vlha_ c.26.1.3 (A:) Phosphopantetheine adenylyltransferase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: Adenine nucleotide alpha hydrolase-like
superfamily: Nucleotidylyl transferase
family: Adenylyltransferase
domain: Phosphopantetheine adenylyltransferase
species: Thermotoga maritima [TaxId: 2336]

Probab=99.01  E-value=3.3e-10  Score=91.53  Aligned_cols=53  Identities=28%  Similarity=0.444  Sum_probs=41.6

Q ss_pred             EEEecccCcCCHHHHHHHHHHHHcCCeEEEEEeCChhhhhcCCCCCCCHHHHHHHHHH
Q 021802           54 VYMDGCFDMMHYGHCNALRQARALGDQLVVGVVSDAEIIANKGPPVTPLHERMIMVNA  111 (307)
Q Consensus        54 V~~~G~FD~lH~GH~~lL~qAk~~gd~LiVgV~sD~~i~~~Kg~pi~s~eER~~ll~~  111 (307)
                      +++.|+||++|.||+.++++|++.+|++++++...+.    . +...+.+++.++.+.
T Consensus         3 aifgGsFdPiH~GHl~i~~~a~~~~D~v~v~~~~~~~----~-~~~~~~~~~~~~~~~   55 (157)
T d1vlha_           3 AVYPGSFDPITLGHVDIIKRALSIFDELVVLVTENPR----K-KCMFTLEERKKLIEE   55 (157)
T ss_dssp             EEEEECCTTCCHHHHHHHHHHHTTCSEEEEEEECCTT----C-CCSSCHHHHHHHHHH
T ss_pred             EEEeecCCCCcHHHHHHHHHHHHhcCccccccccccc----c-cccCCHHHHHHHHHH
Confidence            8999999999999999999999999999998877642    1 344555555555544

>d1lw7a1 c.26.1.3 (A:57-219) Transcriptional regulator NadR, NMN-adenylyltransferase domain {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: Adenine nucleotide alpha hydrolase-like
superfamily: Nucleotidylyl transferase
family: Adenylyltransferase
domain: Transcriptional regulator NadR, NMN-adenylyltransferase domain
species: Haemophilus influenzae [TaxId: 727]

Probab=98.56  E-value=2.7e-08  Score=79.75  Aligned_cols=42  Identities=26%  Similarity=0.284  Sum_probs=38.6

Q ss_pred             CCeEEEEeCcccccCHHHHHHHHHHHhCCCEEEEEEeCcccc
Q 021802          248 DARIIYIDGAFDLFHAGHVEILRIARGLGDFLLVGIHNDQTV  289 (307)
Q Consensus       248 ~~~~v~~~G~FDl~H~GHi~~L~~a~~~g~~liVgv~~D~~v  289 (307)
                      +++++++.|+||++|.||+.++++|++.+|.|+|++.++...
T Consensus         1 ~kkigl~~G~FdP~H~GH~~l~~~a~~~~d~v~v~i~~~~~~   42 (163)
T d1lw7a1           1 EKKVGVIFGKFYPVHTGHINMIYEAFSKVDELHVIVCSDTVR   42 (163)
T ss_dssp             CCCEEEEEECCSSCCHHHHHHHHHHHTTCSEEEEEEEECHHH
T ss_pred             CCeEEEEeeeCCCCCHHHHHHHHHHHHhCCccEEEEECCCCc
Confidence            368999999999999999999999999999999999998643

>d1f9aa_ c.26.1.3 (A:) Nicotinamide mononucleotide (NMN) adenylyltransferase {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: Adenine nucleotide alpha hydrolase-like
superfamily: Nucleotidylyl transferase
family: Adenylyltransferase
domain: Nicotinamide mononucleotide (NMN) adenylyltransferase
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=98.29  E-value=2.9e-07  Score=74.54  Aligned_cols=38  Identities=32%  Similarity=0.547  Sum_probs=34.8

Q ss_pred             EEEeCcccccCHHHHHHHHHHHhCCCEEEEEEeCcccc
Q 021802          252 IYIDGAFDLFHAGHVEILRIARGLGDFLLVGIHNDQTV  289 (307)
Q Consensus       252 v~~~G~FDl~H~GHi~~L~~a~~~g~~liVgv~~D~~v  289 (307)
                      +++.|+||++|.||+.++++|++.+|.++|++.++...
T Consensus         3 gl~~G~FdP~H~GH~~li~~a~~~~d~v~v~i~~~~~~   40 (164)
T d1f9aa_           3 GFIIGRFQPFHKGHLEVIKKIAEEVDEIIIGIGSAQKS   40 (164)
T ss_dssp             EEEEECCTTCCHHHHHHHHHHTTTCSEEEEEECSTTCC
T ss_pred             EEEecccCCCCHHHHHHHHHHHHhCCCeEEEecCCccc
Confidence            78899999999999999999999999999999877543

>d1ej2a_ c.26.1.3 (A:) Nicotinamide mononucleotide (NMN) adenylyltransferase {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: Alpha and beta proteins (a/b)
fold: Adenine nucleotide alpha hydrolase-like
superfamily: Nucleotidylyl transferase
family: Adenylyltransferase
domain: Nicotinamide mononucleotide (NMN) adenylyltransferase
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=98.20  E-value=6.2e-07  Score=73.05  Aligned_cols=38  Identities=24%  Similarity=0.346  Sum_probs=34.7

Q ss_pred             EEEeCcccccCHHHHHHHHHHHhCCCEEEEEEeCcccc
Q 021802          252 IYIDGAFDLFHAGHVEILRIARGLGDFLLVGIHNDQTV  289 (307)
Q Consensus       252 v~~~G~FDl~H~GHi~~L~~a~~~g~~liVgv~~D~~v  289 (307)
                      +++.|+||++|.||+.++++|.+.+|.++|+|.++..-
T Consensus         3 gi~~G~FdP~H~GH~~ii~~a~~~~d~v~v~i~~~~~~   40 (167)
T d1ej2a_           3 GLLVGRMQPFHRGHLQVIKSILEEVDELIICIGSAQLS   40 (167)
T ss_dssp             EEEEECCTTCCHHHHHHHHHHTTTCSEEEEEECSTTCC
T ss_pred             EEEeeccCCCCHHHHHHHHHHHHHCCceEEEEecCCCC
Confidence            78899999999999999999999999999999876543

>d1tfua_ c.26.1.3 (A:) Phosphopantetheine adenylyltransferase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: Adenine nucleotide alpha hydrolase-like
superfamily: Nucleotidylyl transferase
family: Adenylyltransferase
domain: Phosphopantetheine adenylyltransferase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=98.14  E-value=8.4e-07  Score=70.81  Aligned_cols=39  Identities=28%  Similarity=0.301  Sum_probs=35.5

Q ss_pred             CeEEEEeCcccccCHHHHHHHHHHHhCCCEEEEEEeCcc
Q 021802          249 ARIIYIDGAFDLFHAGHVEILRIARGLGDFLLVGIHNDQ  287 (307)
Q Consensus       249 ~~~v~~~G~FDl~H~GHi~~L~~a~~~g~~liVgv~~D~  287 (307)
                      +++.+++|+||++|.||+++.++|.+.+|.++|.+....
T Consensus         1 m~~Av~~GsFdPiH~GHl~i~~~a~~~~d~~~v~~~~~~   39 (157)
T d1tfua_           1 MTGAVCPGSFDPVTLGHVDIFERAAAQFDEVVVAILVNP   39 (157)
T ss_dssp             CCEEEEEECCTTCCHHHHHHHHHHHHHSSEEEEEEECCS
T ss_pred             CCEeEeCcCCCCCCHHHHHHHHHHHHhcChHHhhccccC
Confidence            478899999999999999999999999999999987664

>d1qjca_ c.26.1.3 (A:) Phosphopantetheine adenylyltransferase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Adenine nucleotide alpha hydrolase-like
superfamily: Nucleotidylyl transferase
family: Adenylyltransferase
domain: Phosphopantetheine adenylyltransferase
species: Escherichia coli [TaxId: 562]

Probab=98.11  E-value=1.3e-06  Score=69.34  Aligned_cols=38  Identities=24%  Similarity=0.435  Sum_probs=34.5

Q ss_pred             eEEEEeCcccccCHHHHHHHHHHHhCCCEEEEEEeCcc
Q 021802          250 RIIYIDGAFDLFHAGHVEILRIARGLGDFLLVGIHNDQ  287 (307)
Q Consensus       250 ~~v~~~G~FDl~H~GHi~~L~~a~~~g~~liVgv~~D~  287 (307)
                      |+.+..|+||++|.||+.++++|.+.+|.|+|.+++..
T Consensus         1 k~AifgGsFdP~H~GHl~li~~a~~~~D~v~v~~~~~~   38 (157)
T d1qjca_           1 KRAIYPGTFDPITNGHIDIVTRATQMFDHVILAIAASP   38 (157)
T ss_dssp             CEEEEEECCTTCCHHHHHHHHHHHTTSSEEEEEEESCC
T ss_pred             CEEEEeeccCCCCHHHHHHHHHHHHhCCEeeecccCcc
Confidence            45667999999999999999999999999999998764

>d1od6a_ c.26.1.3 (A:) Phosphopantetheine adenylyltransferase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: Adenine nucleotide alpha hydrolase-like
superfamily: Nucleotidylyl transferase
family: Adenylyltransferase
domain: Phosphopantetheine adenylyltransferase
species: Thermus thermophilus [TaxId: 274]

Probab=98.06  E-value=1.5e-06  Score=69.29  Aligned_cols=38  Identities=21%  Similarity=0.450  Sum_probs=33.4

Q ss_pred             eEEEEeCcccccCHHHHHHHHHHHhCCCEEEEEEeCccc
Q 021802          250 RIIYIDGAFDLFHAGHVEILRIARGLGDFLLVGIHNDQT  288 (307)
Q Consensus       250 ~~v~~~G~FDl~H~GHi~~L~~a~~~g~~liVgv~~D~~  288 (307)
                      ++ +..|+||++|.||++++++|.+.+|.|++++..+..
T Consensus         2 k~-ifgGsFdP~H~GHl~ii~~a~~~~D~v~i~~~~~~~   39 (160)
T d1od6a_           2 HV-VYPGSFDPLTNGHLDVIQRASRLFEKVTVAVLENPS   39 (160)
T ss_dssp             EE-EEEECCTTCCHHHHHHHHHHHHHSSEEEEEEECC--
T ss_pred             eE-EeeeccCCcCHHHHHHHHHHHHhCCEEEEeccCCCC
Confidence            44 778999999999999999999999999999998753

>d1vlha_ c.26.1.3 (A:) Phosphopantetheine adenylyltransferase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: Adenine nucleotide alpha hydrolase-like
superfamily: Nucleotidylyl transferase
family: Adenylyltransferase
domain: Phosphopantetheine adenylyltransferase
species: Thermotoga maritima [TaxId: 2336]

Probab=97.95  E-value=4.4e-06  Score=66.45  Aligned_cols=36  Identities=31%  Similarity=0.451  Sum_probs=33.5

Q ss_pred             EEEeCcccccCHHHHHHHHHHHhCCCEEEEEEeCcc
Q 021802          252 IYIDGAFDLFHAGHVEILRIARGLGDFLLVGIHNDQ  287 (307)
Q Consensus       252 v~~~G~FDl~H~GHi~~L~~a~~~g~~liVgv~~D~  287 (307)
                      ++..|+||++|.||+++.++|.+.+|.++|++....
T Consensus         3 aifgGsFdPiH~GHl~i~~~a~~~~D~v~v~~~~~~   38 (157)
T d1vlha_           3 AVYPGSFDPITLGHVDIIKRALSIFDELVVLVTENP   38 (157)
T ss_dssp             EEEEECCTTCCHHHHHHHHHHHTTCSEEEEEEECCT
T ss_pred             EEEeecCCCCcHHHHHHHHHHHHhcCcccccccccc
Confidence            678999999999999999999999999999998764

>d1o6ba_ c.26.1.3 (A:) Phosphopantetheine adenylyltransferase {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: Adenine nucleotide alpha hydrolase-like
superfamily: Nucleotidylyl transferase
family: Adenylyltransferase
domain: Phosphopantetheine adenylyltransferase
species: Bacillus subtilis [TaxId: 1423]

Probab=97.93  E-value=3.9e-06  Score=67.45  Aligned_cols=38  Identities=24%  Similarity=0.403  Sum_probs=35.0

Q ss_pred             eEEEEeCcccccCHHHHHHHHHHHhCCCEEEEEEeCcc
Q 021802          250 RIIYIDGAFDLFHAGHVEILRIARGLGDFLLVGIHNDQ  287 (307)
Q Consensus       250 ~~v~~~G~FDl~H~GHi~~L~~a~~~g~~liVgv~~D~  287 (307)
                      +|++..|+||++|.||+.++++|.+..|.|+|....+.
T Consensus         2 ~IaifgGsFdPiH~GHl~i~~~a~~~~D~v~v~~~~~~   39 (163)
T d1o6ba_           2 SIAVCPGSFDPVTYGHLDIIKRGAHIFEQVYVCVLNNS   39 (163)
T ss_dssp             CEEEEEECCTTCCHHHHHHHHHHHHHSSEEEEEECCCC
T ss_pred             eEEEeccccCCCCHHHHHHHHHHHHhCCEEEEcccccc
Confidence            68999999999999999999999999999999888663

>d1kama_ c.26.1.3 (A:) Nicotinamide mononucleotide (NMN) adenylyltransferase {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: Adenine nucleotide alpha hydrolase-like
superfamily: Nucleotidylyl transferase
family: Adenylyltransferase
domain: Nicotinamide mononucleotide (NMN) adenylyltransferase
species: Bacillus subtilis [TaxId: 1423]

Probab=97.77  E-value=6.2e-06  Score=66.40  Aligned_cols=38  Identities=18%  Similarity=0.166  Sum_probs=31.8

Q ss_pred             CCeEEEEeCcccccCHHHHHHHHHHHhCCC--EEEEEEeC
Q 021802          248 DARIIYIDGAFDLFHAGHVEILRIARGLGD--FLLVGIHN  285 (307)
Q Consensus       248 ~~~~v~~~G~FDl~H~GHi~~L~~a~~~g~--~liVgv~~  285 (307)
                      ++||++.+|+||++|.||+.++++|.+.++  .+++..+.
T Consensus         1 ~kkIalfgGSFdP~H~GH~~ii~~a~~~~~~~~V~~~~~~   40 (189)
T d1kama_           1 SKKIGIFGGTFDPPHNGHLLMANEVLYQAGLDEIWFMPNQ   40 (189)
T ss_dssp             CCEEEEEEECCSSCCHHHHHHHHHHHHHTTCSEEEEEECC
T ss_pred             CCEEEEeccCcCCCCHHHHHHHHHHHHHcCCCEEEEEecc
Confidence            368989999999999999999999999874  56655544

>d1k4ma_ c.26.1.3 (A:) Nicotinamide mononucleotide (NMN) adenylyltransferase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Adenine nucleotide alpha hydrolase-like
superfamily: Nucleotidylyl transferase
family: Adenylyltransferase
domain: Nicotinamide mononucleotide (NMN) adenylyltransferase
species: Escherichia coli [TaxId: 562]

Probab=97.04  E-value=0.0002  Score=58.29  Aligned_cols=40  Identities=20%  Similarity=0.217  Sum_probs=33.7

Q ss_pred             CeEEEEeCcccccCHHHHHHHHHHHhCC--CEEEEEEeCccc
Q 021802          249 ARIIYIDGAFDLFHAGHVEILRIARGLG--DFLLVGIHNDQT  288 (307)
Q Consensus       249 ~~~v~~~G~FDl~H~GHi~~L~~a~~~g--~~liVgv~~D~~  288 (307)
                      ..+.+.+|+||++|.||+.+++.|++..  |.|++..+.+..
T Consensus         3 ~~~AlfgGSFnP~h~GHl~~~~~a~~~~~~d~v~~~p~~~~~   44 (213)
T d1k4ma_           3 SLQALFGGTFDPVHYGHLKPVETLANLIGLTRVTIIPNNVPP   44 (213)
T ss_dssp             CCEEEEEECCTTCCHHHHHHHHHHHHHHTCSCEEEEECSSCT
T ss_pred             ccEEEEecCcCcCcHHHHHHHHHHHHHcCCCEEEEEEeCCCc
Confidence            3567889999999999999999999753  788888887753

>d1v47a2 c.26.1.5 (A:136-349) ATP sulfurylase catalytic domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: Adenine nucleotide alpha hydrolase-like
superfamily: Nucleotidylyl transferase
family: ATP sulfurylase catalytic domain
domain: ATP sulfurylase catalytic domain
species: Thermus thermophilus [TaxId: 274]

Probab=96.90  E-value=0.03  Score=47.83  Aligned_cols=106  Identities=17%  Similarity=0.121  Sum_probs=69.6

Q ss_pred             hHHhHhhhcCCCCeEEEEecccCcCCHHHHHHHHHHHHcCCeEEEEEeCChhhhhcCCCCCCCHHHHHHHHHHcc----C
Q 021802           39 DRWLQWTRKKKKPVRVYMDGCFDMMHYGHCNALRQARALGDQLVVGVVSDAEIIANKGPPVTPLHERMIMVNAVK----W  114 (307)
Q Consensus        39 ~~~~~~~~~~~~~~~V~~~G~FD~lH~GH~~lL~qAk~~gd~LiVgV~sD~~i~~~Kg~pi~s~eER~~ll~~~k----~  114 (307)
                      .++...+++.+-.. |++.=+=+++|.||..+++.|.+.+|.|+|-..--+     +.+-=++.+-|.+..+.+.    .
T Consensus         9 ~e~r~~f~~~gw~~-v~aFqTrnp~Hr~He~i~~~a~~~~~~lli~p~vG~-----~k~gd~~~~~r~~~y~~~~~~~~~   82 (214)
T d1v47a2           9 EEVRAFFRQRGWRK-VVAFQTRNAPHRAHEYLIRLGLELADGVLVHPILGA-----KKPDDFPTEVIVEAYQALIRDFLP   82 (214)
T ss_dssp             HHHHHHHHHTTCCS-EEEEEESSCCCHHHHHHHHHHHHHSSEEEEEEBCSC-----CCTTSCCHHHHHHHHHHHHHHHSC
T ss_pred             HHHHHHHHHCCCCE-EEEEecCCCCCHHHHHHHHHHHHhcCCEEEeeeecc-----CCccccCHHHHHHHHHHHHhhcCC
Confidence            45555566555444 666445599999999999999999998765332221     2234577788887666521    2


Q ss_pred             ccEEEEcCCCcc-------cHHHHHHHH-HhcCccEEEEcCCCCc
Q 021802          115 VDEVISDAPYAI-------TKDFMKKLF-DEYNIDYIIHGDDPCV  151 (307)
Q Consensus       115 VD~Vv~~~py~~-------t~dfle~ll-~~l~~d~VV~GdD~~f  151 (307)
                      =+.+++ .|+..       .|..+..++ +.++|+..++|.|+.-
T Consensus        83 ~~~v~l-~~~~~~m~yaGPrEA~lhAiirkN~GcthfiVGRDHAG  126 (214)
T d1v47a2          83 QERVAF-FGLATPMRYAGPKEAVFHALVRKNFGATHFLVGRDHAG  126 (214)
T ss_dssp             GGGEEE-CCBCSCCCCCTHHHHHHHHHHHHHTTCSEEEECTTTTC
T ss_pred             CCeEEE-EecCcccccccchHHHHHHHHHHhcCCCeEEEcCcCCc
Confidence            356666 44422       255566654 4599999999999873

>d1g8fa2 c.26.1.5 (A:169-389) ATP sulfurylase catalytic domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: Adenine nucleotide alpha hydrolase-like
superfamily: Nucleotidylyl transferase
family: ATP sulfurylase catalytic domain
domain: ATP sulfurylase catalytic domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.54  E-value=0.1  Score=44.56  Aligned_cols=106  Identities=13%  Similarity=0.091  Sum_probs=67.7

Q ss_pred             hHHhHhhhcCCCCeEEEEecccCcCCHHHHHHHHHHHHc-CCeEEEEEeCChhhhhcCCCCCCCHHHHHHHHHHcc---C
Q 021802           39 DRWLQWTRKKKKPVRVYMDGCFDMMHYGHCNALRQARAL-GDQLVVGVVSDAEIIANKGPPVTPLHERMIMVNAVK---W  114 (307)
Q Consensus        39 ~~~~~~~~~~~~~~~V~~~G~FD~lH~GH~~lL~qAk~~-gd~LiVgV~sD~~i~~~Kg~pi~s~eER~~ll~~~k---~  114 (307)
                      .++...+++.+-. +|++.=+=+++|.||..++++|.+. ++.|+|-    +.+-..| +-=++.+-|++..+.+.   .
T Consensus         9 ~e~r~~~~~~g~~-~v~afqTrnp~Hr~He~i~~~a~~~~~~~lli~----p~vg~~k-~gd~~~~~~~~~~~~~~~~~~   82 (221)
T d1g8fa2           9 AQLRLEFQSRQWD-RVVAFQTRNPMHRAHRELTVRAAREANAKVLIH----PVVGLTK-PGDIDHHTRVRVYQEIIKRYP   82 (221)
T ss_dssp             HHHHHHHHHTTCC-CEEEEEESSCCCHHHHHHHHHHHHHHTCEEEEE----EBCSBCS-TTCCCHHHHHHHHHHHGGGSC
T ss_pred             HHHHHHHHHcCCC-eEEEEecCCCCCHHHHHHHHHHHHhcCCCEEEe----ecccCCc-cccCCHHHHHHHHHHHHHhcC
Confidence            3455555555544 3777778899999999999998765 4455542    2221112 33467788888776632   2


Q ss_pred             ccEEEEcCCCcc-------cHHHHHHHH-HhcCccEEEEcCCCCc
Q 021802          115 VDEVISDAPYAI-------TKDFMKKLF-DEYNIDYIIHGDDPCV  151 (307)
Q Consensus       115 VD~Vv~~~py~~-------t~dfle~ll-~~l~~d~VV~GdD~~f  151 (307)
                      =+.+++ .++..       .|..+..++ +.++|..+++|-|+.-
T Consensus        83 ~~~~~l-~~~~~~m~yaGPrEA~lhAiirkN~GcthfiVGRDHAG  126 (221)
T d1g8fa2          83 NGIAFL-SLLPLAMRMSGDREAVWHAIIRKNYGASHFIVGRDHAG  126 (221)
T ss_dssp             TTSEEE-CCBCCBCCCCHHHHHHHHHHHHHHTTCSEEECCTTTTC
T ss_pred             CCeEEE-EeccccccccchHHHHHHHHHHHhcCCCeeEecccccC
Confidence            245666 45432       255566544 4599999999999873

>d1x6va2 c.26.1.5 (A:390-624) ATP sulfurylase catalytic domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Adenine nucleotide alpha hydrolase-like
superfamily: Nucleotidylyl transferase
family: ATP sulfurylase catalytic domain
domain: ATP sulfurylase catalytic domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.17  E-value=0.19  Score=43.15  Aligned_cols=108  Identities=17%  Similarity=0.012  Sum_probs=64.9

Q ss_pred             hHHhHhhhcCCCCeEEEEecccCcCCHHHHHHHHHHHHcC----C-eEEEEEeCChhhhhcCCCCCCCHHHHHHHHHHc-
Q 021802           39 DRWLQWTRKKKKPVRVYMDGCFDMMHYGHCNALRQARALG----D-QLVVGVVSDAEIIANKGPPVTPLHERMIMVNAV-  112 (307)
Q Consensus        39 ~~~~~~~~~~~~~~~V~~~G~FD~lH~GH~~lL~qAk~~g----d-~LiVgV~sD~~i~~~Kg~pi~s~eER~~ll~~~-  112 (307)
                      .++...+.+.+-. +|++.=+=+++|.||..+++.|.+.+    + .-.+.+++  .+- .+.+-=++.+-|++..+.+ 
T Consensus        12 ~e~r~~f~~~gw~-~VvaFqTRNp~HraHe~i~~~a~~~~~~~~~~~~~lli~P--vvG-~~k~gD~~~~~~~~~y~~l~   87 (235)
T d1x6va2          12 TELKQKFKDMNAD-AVSAFQLRNPVHNGHALLMQDTHKQLLERGYRRPVLLLHP--LGG-WTKDDDVPLMWRMKQHAAVL   87 (235)
T ss_dssp             HHHHHHHHHTTCS-EEEEEEESSCCCHHHHHHHHHHHHHHHHTTCSSEEEEEEE--BCS-CCCTTSCCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHCCCC-eEEEeecCCCCcHHHHHHHHHHHHHHHhccccCCeEEEee--ccc-cCCCCccChHHHHHHHHHHH
Confidence            3444445555544 47776678999999999999987642    1 11222332  111 1223447778887644432 


Q ss_pred             ----cCccEEEEcCCCc-------ccHHHHHHHHH-hcCccEEEEcCCCCc
Q 021802          113 ----KWVDEVISDAPYA-------ITKDFMKKLFD-EYNIDYIIHGDDPCV  151 (307)
Q Consensus       113 ----k~VD~Vv~~~py~-------~t~dfle~ll~-~l~~d~VV~GdD~~f  151 (307)
                          ..-+.+++ .++.       +.|..+..++. .++|...++|.|+.-
T Consensus        88 ~~~~~~~~~~~l-~~l~~~mryAGPrEAllhAiiRkN~GcThfiVGRDHAG  137 (235)
T d1x6va2          88 EEGVLNPETTVV-AIFPSPMMYAGPTEVQWHCRARMVAGANFYIVGRDPAG  137 (235)
T ss_dssp             HTTSSCGGGEEE-CCBCCCCCCCHHHHHHHHHHHHHHTTCSEEEECSSTTC
T ss_pred             HhccCCCCcEEE-EeccccccccccHHHHHHHHHHHhcCCCeEEEcCcccC
Confidence                12366666 4432       13566666554 599999999999873

>d1v8fa_ c.26.1.4 (A:) Pantothenate synthetase (Pantoate-beta-alanine ligase, PanC) {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: Adenine nucleotide alpha hydrolase-like
superfamily: Nucleotidylyl transferase
family: Pantothenate synthetase (Pantoate-beta-alanine ligase, PanC)
domain: Pantothenate synthetase (Pantoate-beta-alanine ligase, PanC)
species: Thermus thermophilus [TaxId: 274]

Probab=95.96  E-value=0.012  Score=52.33  Aligned_cols=66  Identities=18%  Similarity=0.160  Sum_probs=50.9

Q ss_pred             EEEecccCcCCHHHHHHHHHHHHcCCeEEEEEeCChhh-hhcCC--CCCCCHHHHHHHHHHccCccEEEE
Q 021802           54 VYMDGCFDMMHYGHCNALRQARALGDQLVVGVVSDAEI-IANKG--PPVTPLHERMIMVNAVKWVDEVIS  120 (307)
Q Consensus        54 V~~~G~FD~lH~GH~~lL~qAk~~gd~LiVgV~sD~~i-~~~Kg--~pi~s~eER~~ll~~~k~VD~Vv~  120 (307)
                      +-...+-=.+|-||+.|+++|++.+|.++|.+--+|.= .....  ...-+.++=++++++. +||.++.
T Consensus        19 i~~VPTMGaLH~GHlsLi~~a~~~~~~vvvSIFVNP~QF~~~eD~~~YPr~~~~D~~~l~~~-~vd~vf~   87 (276)
T d1v8fa_          19 VGFVPTMGYLHRGHLALVERARRENPFVVVSVFVNPLQFGPGEDYHRYPRDLERDRALLQEA-GVDLLFA   87 (276)
T ss_dssp             EEEEEECSSCCHHHHHHHHHHHHHCSEEEEEECCCGGGCCTTSSTTTSCCCHHHHHHHHHHT-TCSEEEC
T ss_pred             EEEEcCCccHhHHHHHHHHHHHHhCCCEEEEEEecCccCCCcchhhccccchhhhHHHHHhC-CCCEEEe
Confidence            55566666799999999999999999999998777632 11122  3445678889999997 9999876

>d1nuua_ c.26.1.3 (A:) Cytosolic NMN/NAMN adenylyltransferase {Human (Homo sapiens), FKSG76 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Adenine nucleotide alpha hydrolase-like
superfamily: Nucleotidylyl transferase
family: Adenylyltransferase
domain: Cytosolic NMN/NAMN adenylyltransferase
species: Human (Homo sapiens), FKSG76 [TaxId: 9606]

Probab=95.62  E-value=0.003  Score=53.63  Aligned_cols=26  Identities=19%  Similarity=0.423  Sum_probs=22.4

Q ss_pred             eEEEEeCcccccCHHHHHHHHHHHhC
Q 021802          250 RIIYIDGAFDLFHAGHVEILRIARGL  275 (307)
Q Consensus       250 ~~v~~~G~FDl~H~GHi~~L~~a~~~  275 (307)
                      .+.+.+|+||++|.||+.+++.|++.
T Consensus         5 ~vl~~~GSFdP~H~GHl~i~~~a~~~   30 (233)
T d1nuua_           5 VVLLACGSFNPITNMHLRMFEVARDH   30 (233)
T ss_dssp             EEEEEEECCTTCCHHHHHHHHHHHHH
T ss_pred             EEEEEeeeeCccHHHHHHHHHHHHHH
Confidence            34567999999999999999998864

>d1ihoa_ c.26.1.4 (A:) Pantothenate synthetase (Pantoate-beta-alanine ligase, PanC) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Adenine nucleotide alpha hydrolase-like
superfamily: Nucleotidylyl transferase
family: Pantothenate synthetase (Pantoate-beta-alanine ligase, PanC)
domain: Pantothenate synthetase (Pantoate-beta-alanine ligase, PanC)
species: Escherichia coli [TaxId: 562]

Probab=95.14  E-value=0.029  Score=49.96  Aligned_cols=76  Identities=22%  Similarity=0.217  Sum_probs=53.2

Q ss_pred             hHhhhcCCCCeEEEEecccCcCCHHHHHHHHHHHHcCCeEEEEEeCChhh-hhcCC--CCCCCHHHHHHHHHHccCccEE
Q 021802           42 LQWTRKKKKPVRVYMDGCFDMMHYGHCNALRQARALGDQLVVGVVSDAEI-IANKG--PPVTPLHERMIMVNAVKWVDEV  118 (307)
Q Consensus        42 ~~~~~~~~~~~~V~~~G~FD~lH~GH~~lL~qAk~~gd~LiVgV~sD~~i-~~~Kg--~pi~s~eER~~ll~~~k~VD~V  118 (307)
                      .+.++..+++  +-...+-=.+|-||+.|+++|++.+|.++|.+--+|.= .....  ...-+.++=.+++++. +||.+
T Consensus        14 ~~~~r~~g~~--ig~VPTMGaLH~GHlsLi~~A~~~~~~vvvSIFVNP~QF~~~eD~~~YPr~l~~D~~~l~~~-~vd~v   90 (282)
T d1ihoa_          14 IRRLRMEGKR--VALVPTMGNLHDGHMKLVDEAKARADVVVVSIFVNPMQFDRPEDLARYPRTLQEDCEKLNKR-KVDLV   90 (282)
T ss_dssp             HHHHHHTTCC--EEEEEECSCCCHHHHHHHHHHHHHCSEEEEEECCCGGGCSSHHHHHHSCCCHHHHHHHHHHT-TCSEE
T ss_pred             HHHHHHcCCc--EEEEcCCcchhHHHHHHHHHHHHhCCcEEEEEEecCccCcccchhhccCccHHHHHHHHHhc-CCcEE
Confidence            3344444443  45555566799999999999999999999988766621 11111  2345678888999997 99988


Q ss_pred             EE
Q 021802          119 IS  120 (307)
Q Consensus       119 v~  120 (307)
                      +.
T Consensus        91 f~   92 (282)
T d1ihoa_          91 FA   92 (282)
T ss_dssp             EC
T ss_pred             Ee
Confidence            76

>d1kr2a_ c.26.1.3 (A:) Nicotinamide mononucleotide (NMN) adenylyltransferase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Adenine nucleotide alpha hydrolase-like
superfamily: Nucleotidylyl transferase
family: Adenylyltransferase
domain: Nicotinamide mononucleotide (NMN) adenylyltransferase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.01  E-value=0.0059  Score=53.47  Aligned_cols=25  Identities=16%  Similarity=0.438  Sum_probs=21.6

Q ss_pred             eEEEEeCcccccCHHHHHHHHHHHh
Q 021802          250 RIIYIDGAFDLFHAGHVEILRIARG  274 (307)
Q Consensus       250 ~~v~~~G~FDl~H~GHi~~L~~a~~  274 (307)
                      .|++.+|+||+.|.||+.+.+.|++
T Consensus         5 ~v~l~~GSFdP~H~GHl~ia~~a~~   29 (271)
T d1kr2a_           5 VVLLACGSFNPITNMHLRLFELAKD   29 (271)
T ss_dssp             EEEEEEECCTTCCHHHHHHHHHHHH
T ss_pred             EEEEEccccCcchHHHHHHHHHHHH
Confidence            4557799999999999999988874

>d1jhda2 c.26.1.5 (A:174-396) ATP sulfurylase catalytic domain {Sulfur-oxidizing endosymbiont of Riftia pachyptila [TaxId: 35843]}

class: Alpha and beta proteins (a/b)
fold: Adenine nucleotide alpha hydrolase-like
superfamily: Nucleotidylyl transferase
family: ATP sulfurylase catalytic domain
domain: ATP sulfurylase catalytic domain
species: Sulfur-oxidizing endosymbiont of Riftia pachyptila [TaxId: 35843]

Probab=94.06  E-value=0.02  Score=48.12  Aligned_cols=37  Identities=19%  Similarity=0.222  Sum_probs=28.8

Q ss_pred             CeEEEEeCcccccCHHHHHHHHHHHhC--CCEEEEEEeCc
Q 021802          249 ARIIYIDGAFDLFHAGHVEILRIARGL--GDFLLVGIHND  286 (307)
Q Consensus       249 ~~~v~~~G~FDl~H~GHi~~L~~a~~~--g~~liVgv~~D  286 (307)
                      ++++. -|+||++|.||+.+.+.|.+.  .|.+++-.+..
T Consensus        20 ~~v~~-f~TfnP~H~GHl~ia~~a~~~~~ld~v~~iP~~~   58 (223)
T d1jhda2          20 SKVVA-FQTRNPMHRAHEELCRMAMESLDADGVVVHMLLG   58 (223)
T ss_dssp             SSEEE-EEESSCCCHHHHHHHHHHHHHHTCSEEEEEEEEC
T ss_pred             CEEEE-eeCCCCCCHHHHHHHHHHHHHhCcCceEEecccC
Confidence            34444 499999999999999999965  57777766544

>d1mrza2 c.26.1.3 (A:2-158) FMN adenylyltransferase domain of bifunctional FAD synthetase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: Adenine nucleotide alpha hydrolase-like
superfamily: Nucleotidylyl transferase
family: Adenylyltransferase
domain: FMN adenylyltransferase domain of bifunctional FAD synthetase
species: Thermotoga maritima [TaxId: 2336]

Probab=94.05  E-value=0.026  Score=45.72  Aligned_cols=36  Identities=31%  Similarity=0.465  Sum_probs=26.7

Q ss_pred             EEEeCcccccCHHHHHHHHHHHhC----C-CEEEEEEeCcc
Q 021802          252 IYIDGAFDLFHAGHVEILRIARGL----G-DFLLVGIHNDQ  287 (307)
Q Consensus       252 v~~~G~FDl~H~GHi~~L~~a~~~----g-~~liVgv~~D~  287 (307)
                      |++-|.||-+|.||..+|++|++.    + .-+++....+.
T Consensus         1 VvtiG~FDGvH~GHq~li~~~~~~a~~~~~~~~v~tf~~~p   41 (157)
T d1mrza2           1 VVSIGVFDGVHIGHQKVLRTMKEIAFFRKDDSLIYTISYPP   41 (157)
T ss_dssp             CEEEECCTTCCHHHHHHHHHHHHHHHHHTCCCEEEEESSCG
T ss_pred             CEEEEcccchhHHHHHHHHHHHHHHHHcCCCceEeecCCCc
Confidence            467799999999999999988653    2 34566555444

>d2a84a1 c.26.1.4 (A:3-288) Pantothenate synthetase (Pantoate-beta-alanine ligase, PanC) {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: Adenine nucleotide alpha hydrolase-like
superfamily: Nucleotidylyl transferase
family: Pantothenate synthetase (Pantoate-beta-alanine ligase, PanC)
domain: Pantothenate synthetase (Pantoate-beta-alanine ligase, PanC)
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=93.89  E-value=0.045  Score=48.67  Aligned_cols=77  Identities=17%  Similarity=0.169  Sum_probs=49.4

Q ss_pred             HhHhhhcCCCCeEEEEecccCcCCHHHHHHHHHHHH-cCCeEEEEEeCChh-hhhcCC--CCCCCHHHHHHHHHHccCcc
Q 021802           41 WLQWTRKKKKPVRVYMDGCFDMMHYGHCNALRQARA-LGDQLVVGVVSDAE-IIANKG--PPVTPLHERMIMVNAVKWVD  116 (307)
Q Consensus        41 ~~~~~~~~~~~~~V~~~G~FD~lH~GH~~lL~qAk~-~gd~LiVgV~sD~~-i~~~Kg--~pi~s~eER~~ll~~~k~VD  116 (307)
                      +.+.++..+++  +-..-+---+|-||+.|+++|++ .++.++|.+.-+|. ......  ...-+.++=.++++.. +||
T Consensus        21 ~~~~~~~~g~~--i~~VPTMGaLH~GHlsLi~~a~~~~~~~vvvSIFVNP~QF~~~eD~~~YPr~~~~D~~~l~~~-~vd   97 (286)
T d2a84a1          21 VSRALRLTGRR--VMLVPTMGALHEGHLALVRAAKRVPGSVVVVSIFVNPMQFGAGGDLDAYPRTPDDDLAQLRAE-GVE   97 (286)
T ss_dssp             HHHHHHHTTCC--EEEEEECSSCCHHHHHHHHHHHTSTTCEEEEEECCCCCCTTC----------CCSHHHHHHHT-TCC
T ss_pred             HHHHHHHhCCe--EEEEeCCcchhHHHHHHHHHHhhcCCCEEEEEEeecccccCccccCccCCcchhhhhHHHhcc-CCc
Confidence            33444555543  55667778899999999999997 68888988866652 111111  1223345557778886 999


Q ss_pred             EEEE
Q 021802          117 EVIS  120 (307)
Q Consensus       117 ~Vv~  120 (307)
                      .++.
T Consensus        98 ~vf~  101 (286)
T d2a84a1          98 IAFT  101 (286)
T ss_dssp             EEEC
T ss_pred             eeec
Confidence            8876

>d1v8fa_ c.26.1.4 (A:) Pantothenate synthetase (Pantoate-beta-alanine ligase, PanC) {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: Adenine nucleotide alpha hydrolase-like
superfamily: Nucleotidylyl transferase
family: Pantothenate synthetase (Pantoate-beta-alanine ligase, PanC)
domain: Pantothenate synthetase (Pantoate-beta-alanine ligase, PanC)
species: Thermus thermophilus [TaxId: 274]

Probab=91.68  E-value=0.045  Score=48.44  Aligned_cols=36  Identities=19%  Similarity=0.484  Sum_probs=29.2

Q ss_pred             eEEEEeCcccccCHHHHHHHHHHHhCCCEEEEEEeCc
Q 021802          250 RIIYIDGAFDLFHAGHVEILRIARGLGDFLLVGIHND  286 (307)
Q Consensus       250 ~~v~~~G~FDl~H~GHi~~L~~a~~~g~~liVgv~~D  286 (307)
                      +|++|+ +==-+|.||+.++++|++.+|.+||.|.-+
T Consensus        18 ~i~~VP-TMGaLH~GHlsLi~~a~~~~~~vvvSIFVN   53 (276)
T d1v8fa_          18 GVGFVP-TMGYLHRGHLALVERARRENPFVVVSVFVN   53 (276)
T ss_dssp             CEEEEE-ECSSCCHHHHHHHHHHHHHCSEEEEEECCC
T ss_pred             CEEEEc-CCccHhHHHHHHHHHHHHhCCCEEEEEEec
Confidence            466653 333589999999999999999999999654

>d1ihoa_ c.26.1.4 (A:) Pantothenate synthetase (Pantoate-beta-alanine ligase, PanC) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Adenine nucleotide alpha hydrolase-like
superfamily: Nucleotidylyl transferase
family: Pantothenate synthetase (Pantoate-beta-alanine ligase, PanC)
domain: Pantothenate synthetase (Pantoate-beta-alanine ligase, PanC)
species: Escherichia coli [TaxId: 562]

Probab=91.33  E-value=0.052  Score=48.21  Aligned_cols=38  Identities=21%  Similarity=0.467  Sum_probs=30.3

Q ss_pred             CCeEEEEeCcccccCHHHHHHHHHHHhCCCEEEEEEeCc
Q 021802          248 DARIIYIDGAFDLFHAGHVEILRIARGLGDFLLVGIHND  286 (307)
Q Consensus       248 ~~~~v~~~G~FDl~H~GHi~~L~~a~~~g~~liVgv~~D  286 (307)
                      +++|++|+ +==-+|.||+.++++|++.+|.+||.|.-.
T Consensus        21 g~~ig~VP-TMGaLH~GHlsLi~~A~~~~~~vvvSIFVN   58 (282)
T d1ihoa_          21 GKRVALVP-TMGNLHDGHMKLVDEAKARADVVVVSIFVN   58 (282)
T ss_dssp             TCCEEEEE-ECSCCCHHHHHHHHHHHHHCSEEEEEECCC
T ss_pred             CCcEEEEc-CCcchhHHHHHHHHHHHHhCCcEEEEEEec
Confidence            45666664 333479999999999999999999999743

>d2a84a1 c.26.1.4 (A:3-288) Pantothenate synthetase (Pantoate-beta-alanine ligase, PanC) {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: Adenine nucleotide alpha hydrolase-like
superfamily: Nucleotidylyl transferase
family: Pantothenate synthetase (Pantoate-beta-alanine ligase, PanC)
domain: Pantothenate synthetase (Pantoate-beta-alanine ligase, PanC)
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=89.53  E-value=0.12  Score=45.87  Aligned_cols=38  Identities=24%  Similarity=0.566  Sum_probs=30.5

Q ss_pred             CCeEEEEeCcccccCHHHHHHHHHHHh-CCCEEEEEEeCc
Q 021802          248 DARIIYIDGAFDLFHAGHVEILRIARG-LGDFLLVGIHND  286 (307)
Q Consensus       248 ~~~~v~~~G~FDl~H~GHi~~L~~a~~-~g~~liVgv~~D  286 (307)
                      +++|++|+ +=.-+|.||+.++++|++ .+|.+||.|.=.
T Consensus        29 g~~i~~VP-TMGaLH~GHlsLi~~a~~~~~~~vvvSIFVN   67 (286)
T d2a84a1          29 GRRVMLVP-TMGALHEGHLALVRAAKRVPGSVVVVSIFVN   67 (286)
T ss_dssp             TCCEEEEE-ECSSCCHHHHHHHHHHHTSTTCEEEEEECCC
T ss_pred             CCeEEEEe-CCcchhHHHHHHHHHHhhcCCCEEEEEEeec
Confidence            46777764 445689999999999997 799999999533