Citrus Sinensis ID: 021828

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------
MEMNGTPALHGYLMPAEWEPHSQCWMGWPERLDNWRDDALHAQRVFAKVATAISKFEPVTVCASAAQWENARSQLPENIRVIEMSMNGSWFRDTGPTIVVNKSSASSGAQAPKVAGIDWNFNSWGGVDDGCYRDWSLDLQVARKILSTERLPRFPHSMVLEGGSIHVDGEGTCLTTEECLLNKNRNPHLTKGQIENELKAYLGVMKIIWLPRGLFGMIHDGEAKPRLAGTRLAASYVNFYIANGGIITPQFGDKKWDGEAVRVLSQAFPKYEVVGIERAREIVLGGGNIHCITQQQPAIPTNAAKLD
cccccccccccccccccccccEEEEEEcccccccHHHHHHHHHHHHHHHHHHHHccccEEEEccHHHHHHHHHHccccEEEEEEccccccccccccEEEEcccccccccccccEEEEEEEEccccccccccccccHHHHHHHHHHHHHccccEEccccccccccEEEcccccEEEEccEEccccccccccHHHHHHHHHHHHcccEEEEcccccccccccccccccccccccccccEEEEEEccccccccccccccHHHHHHHHHHHccccEEEccccHHHHHHccccccEEccccccccccccccc
cccccccHHccccccccccccccEEEEccccccccccccHHHHHHHHHHHHHHHccccEEEEEcHHHHHHHHHHccccEEEEEEcccccHEEccccEEEEcccccccccccccEEEEEEEEEccccccccccccccHHHHHHHHHHHHHccccccccEEEEccEEEEcccEEEEEcHHHcccccccccccHHHHHHHHHHHccccEEEEEcccccccccccccccccccccccEEEEEEEEcccEEEEEcccccccHHHHHHHHHHHccccEEEEcccHHHHHcccccEEEEEcccccccccccEcc
memngtpalhgylmpaewephsqcwmgwperldnwRDDALHAQRVFAKVATAIskfepvtvcASAAQWENARSQLPENIRVIEMsmngswfrdtgptivvnkssassgaqapkvagidwnfnswggvddgcyrdWSLDLQVARKILsterlprfphsmvleggsihvdgegtcltteecllnknrnphltkgQIENELKAYLGVMKIiwlprglfgmihdgeakprlagTRLAASYVNFYianggiitpqfgdkkwdGEAVRVLSQAFPKYEVVGIERAREIVLgggnihcitqqqpaiptnaakld
MEMNGTPALHGYLMPAEWEPHSQCWMGWPERLDNWRDDALHAQRVFAKVATAISKFEPVTVCASAAQWENARSQLPENIRVIEMSMNGSWFRDTGPTIVVNKSSASSGAQAPKVAGIDWNFNSWGGVDDGCYRDWSLDLQVARKILsterlprfphsmvleggsihVDGEGTCLTTEECLlnknrnphltkgQIENELKAYLGVMKIIWLPRGLFGMIHDGEAKPRLAGTRLAASYVNFYIANGGIITPQFGDKKWDGEAVRVLSqafpkyevvGIERAREIVLGGGNIHcitqqqpaiptnaakld
MEMNGTPALHGYLMPAEWEPHSQCWMGWPERLDNWRDDALHAQRVFAKVATAISKFEPVTVCASAAQWENARSQLPENIRVIEMSMNGSWFRDTGPTIVVNKSSASSGAQAPKVAGIDWNFNSWGGVDDGCYRDWSLDLQVARKILSTERLPRFPHSMVLEGGSIHVDGEGTCLTTEECLLNKNRNPHLTKGQIENELKAYLGVMKIIWLPRGLFGMIHDGEAKPRLAGTRLAASYVNFYIANGGIITPQFGDKKWDGEAVRVLSQAFPKYEVVGIERAREIVLGGGNIHCITQQQPAIPTNAAKLD
********LHGYLMPAEWEPHSQCWMGWPERLDNWRDDALHAQRVFAKVATAISKFEPVTVCASAAQWENARSQLPENIRVIEMSMNGSWFRDTGPTIVV************KVAGIDWNFNSWGGVDDGCYRDWSLDLQVARKILSTERLPRFPHSMVLEGGSIHVDGEGTCLTTEECLLNKNRNPHLTKGQIENELKAYLGVMKIIWLPRGLFGMIHDGEAKPRLAGTRLAASYVNFYIANGGIITPQFGDKKWDGEAVRVLSQAFPKYEVVGIERAREIVLGGGNIHCITQ*************
********LHGYLMPAEWEPHSQCWMGWPERLDNWRDDALHAQRVFAKVATAISKFEPVTVCASAAQWENARSQLPENIRVIEMSMNGSWFRDTGPTIVVNKSSASSGAQAPKVAGIDWNFNSWGGVDDGCYRDWSLDLQVARKILSTERLPRFPHSMVLEGGSIHVDGEGTCLTTEECLLNKNRNPHLTKGQIENELKAYLGVMKIIWLPRGLFGMIHDGEAKPRLAGTRLAASYVNFYIANGGIITPQFGDKKWDGEAVRVLSQAFPKYEVVGIERAREIVLGGGNIHCITQQQPAIP*******
MEMNGTPALHGYLMPAEWEPHSQCWMGWPERLDNWRDDALHAQRVFAKVATAISKFEPVTVCASAAQWENARSQLPENIRVIEMSMNGSWFRDTGPTIVVNK*********PKVAGIDWNFNSWGGVDDGCYRDWSLDLQVARKILSTERLPRFPHSMVLEGGSIHVDGEGTCLTTEECLLNKNRNPHLTKGQIENELKAYLGVMKIIWLPRGLFGMIHDGEAKPRLAGTRLAASYVNFYIANGGIITPQFGDKKWDGEAVRVLSQAFPKYEVVGIERAREIVLGGGNIHCITQQQPAIPTNAAKLD
****GTP**HGYLMPAEWEPHSQCWMGWPERLDNWRDDALHAQRVFAKVATAISKFEPVTVCASAAQWENARSQLPENIRVIEMSMNGSWFRDTGPTIVVNKSSASSGAQAPKVAGIDWNFNSWGGVDDGCYRDWSLDLQVARKILSTERLPRFPHSMVLEGGSIHVDGEGTCLTTEECLLNKNRNPHLTKGQIENELKAYLGVMKIIWLPRGLFGMIHDGEAKPRLAGTRLAASYVNFYIANGGIITPQFGDKKWDGEAVRVLSQAFPKYEVVGIERAREIVLGGGNIHCITQQQP**********
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MEMNGTPALHGYLMPAEWEPHSQCWMGWPERLDNWRDDALHAQRVFAKVATAISKFEPVTVCASAAQWENARSQLPENIRVIEMSMNGSWFRDTGPTIVVNKSSASSGAQAPKVAGIDWNFNSWGGVDDGCYRDWSLDLQVARKILSTERLPRFPHSMVLEGGSIHVDGEGTCLTTEECLLNKNRNPHLTKGQIENELKAYLGVMKIIWLPRGLFGMIHDGEAKPRLAGTRLAASYVNFYIANGGIITPQFGDKKWDGEAVRVLSQAFPKYEVVGIERAREIVLGGGNIHCITQQQPAIPTNAAKLD
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query307 2.2.26 [Sep-21-2011]
Q8GWW7383 Agmatine deiminase OS=Ara yes no 0.677 0.543 0.720 9e-93
A6UY93368 Agmatine deiminase OS=Pse yes no 0.677 0.565 0.573 1e-65
Q87UB2368 Agmatine deiminase OS=Pse yes no 0.687 0.573 0.561 8e-65
Q6LG16363 Putative agmatine deimina yes no 0.938 0.793 0.4 3e-64
Q4ZLL3368 Agmatine deiminase OS=Pse yes no 0.687 0.573 0.556 3e-64
Q48Q55368 Agmatine deiminase OS=Pse yes no 0.687 0.573 0.552 4e-64
A4XP44368 Agmatine deiminase OS=Pse yes no 0.687 0.573 0.547 4e-64
C3K5U8368 Agmatine deiminase OS=Pse yes no 0.687 0.573 0.561 2e-63
Q725C6364 Putative agmatine deimina yes no 0.928 0.782 0.414 6e-63
Q2SRJ6364 Putative agmatine deimina yes no 0.671 0.565 0.546 1e-62
>sp|Q8GWW7|AGUA_ARATH Agmatine deiminase OS=Arabidopsis thaliana GN=AIH PE=1 SV=2 Back     alignment and function desciption
 Score =  340 bits (872), Expect = 9e-93,   Method: Compositional matrix adjust.
 Identities = 155/215 (72%), Positives = 175/215 (81%)

Query: 2   EMNGTPALHGYLMPAEWEPHSQCWMGWPERLDNWRDDALHAQRVFAKVATAISKFEPVTV 61
           E   +PA HGY MPAEW+ H+Q W+GWPER DNWR +AL AQRVFA VA AISKFEPVTV
Sbjct: 3   ESRESPAEHGYYMPAEWDSHAQTWIGWPERQDNWRHNALPAQRVFADVAKAISKFEPVTV 62

Query: 62  CASAAQWENARSQLPENIRVIEMSMNGSWFRDTGPTIVVNKSSASSGAQAPKVAGIDWNF 121
           CAS AQWENAR QLPE+IRV+EMSMN SWFRD+GPT +V K      +    +AGIDWNF
Sbjct: 63  CASPAQWENARKQLPEDIRVVEMSMNDSWFRDSGPTFIVRKRPVKLSSLNRNIAGIDWNF 122

Query: 122 NSWGGVDDGCYRDWSLDLQVARKILSTERLPRFPHSMVLEGGSIHVDGEGTCLTTEECLL 181
           N+WGG +DGCY DWS DL V+RKIL+ ER+PRF HSM+LEGGSIHVDGEGTCL TEECLL
Sbjct: 123 NAWGGANDGCYNDWSHDLLVSRKILALERIPRFQHSMILEGGSIHVDGEGTCLVTEECLL 182

Query: 182 NKNRNPHLTKGQIENELKAYLGVMKIIWLPRGLFG 216
           NKNRNPH++K QIE ELK YLGV   IWLPRGL+G
Sbjct: 183 NKNRNPHMSKEQIEEELKKYLGVQSFIWLPRGLYG 217
Mediates the hydrolysis of agmatine into N-carbamoylputrescine in the arginine decarboxylase (ADC) pathway of putrescine biosynthesis, a basic polyamine.
Arabidopsis thaliana (taxid: 3702)
EC: 3EC: .EC: 5EC: .EC: 3EC: .EC: 1EC: 2
>sp|A6UY93|AGUA_PSEA7 Agmatine deiminase OS=Pseudomonas aeruginosa (strain PA7) GN=aguA PE=3 SV=1 Back     alignment and function description
>sp|Q87UB2|AGUA_PSESM Agmatine deiminase OS=Pseudomonas syringae pv. tomato (strain DC3000) GN=aguA PE=3 SV=1 Back     alignment and function description
>sp|Q6LG16|AGUA_PHOPR Putative agmatine deiminase OS=Photobacterium profundum GN=aguA PE=3 SV=2 Back     alignment and function description
>sp|Q4ZLL3|AGUA_PSEU2 Agmatine deiminase OS=Pseudomonas syringae pv. syringae (strain B728a) GN=aguA PE=3 SV=1 Back     alignment and function description
>sp|Q48Q55|AGUA_PSE14 Agmatine deiminase OS=Pseudomonas syringae pv. phaseolicola (strain 1448A / Race 6) GN=aguA PE=3 SV=1 Back     alignment and function description
>sp|A4XP44|AGUA_PSEMY Agmatine deiminase OS=Pseudomonas mendocina (strain ymp) GN=aguA PE=3 SV=1 Back     alignment and function description
>sp|C3K5U8|AGUA_PSEFS Agmatine deiminase OS=Pseudomonas fluorescens (strain SBW25) GN=aguA PE=3 SV=1 Back     alignment and function description
>sp|Q725C6|AGUA1_LISMF Putative agmatine deiminase 1 OS=Listeria monocytogenes serotype 4b (strain F2365) GN=aguA1 PE=3 SV=1 Back     alignment and function description
>sp|Q2SRJ6|AGUA_MYCCT Putative agmatine deiminase OS=Mycoplasma capricolum subsp. capricolum (strain California kid / ATCC 27343 / NCTC 10154) GN=aguA PE=3 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query307
148906450367 unknown [Picea sitchensis] 0.944 0.790 0.553 1e-105
225455756374 PREDICTED: agmatine deiminase [Vitis vin 0.703 0.577 0.814 1e-102
317106658378 JHL10I11.8 [Jatropha curcas] 0.693 0.563 0.813 1e-101
255541906377 Agmatine deiminase, putative [Ricinus co 0.693 0.564 0.813 1e-101
449440870381 PREDICTED: agmatine deiminase-like [Cucu 0.703 0.566 0.777 1e-99
224130088380 predicted protein [Populus trichocarpa] 0.684 0.552 0.790 2e-98
147842216369 hypothetical protein VITISV_043040 [Viti 0.687 0.571 0.796 3e-98
356562666376 PREDICTED: agmatine deiminase-like [Glyc 0.703 0.574 0.751 8e-97
357477779322 Agmatine deiminase [Medicago truncatula] 0.703 0.670 0.717 1e-93
217072080374 unknown [Medicago truncatula] 0.703 0.577 0.712 5e-93
>gi|148906450|gb|ABR16378.1| unknown [Picea sitchensis] Back     alignment and taxonomy information
 Score =  386 bits (991), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 206/372 (55%), Positives = 241/372 (64%), Gaps = 82/372 (22%)

Query: 1   MEMNGTPALHGYLMPAEWEPHSQCWMGWPERLDNWRDDALHAQRVFAKVATAISKFEPVT 60
           M+ N +P+  GY MPAEWE HSQCWMGWPER DNWR+ A+H QRVF +VA+AISKFE VT
Sbjct: 1   MDNNASPSEFGYRMPAEWEFHSQCWMGWPERPDNWRESAMHGQRVFVEVASAISKFESVT 60

Query: 61  VCASAAQWENARSQLPENIRVIEMSMNGSWFRDTGPTIVVNKSSASSGAQAPKVAGIDWN 120
           VCASAAQW++AR+QLP+NIRV+EMSMN +WFRD GPT VV   ++S       VAGIDW+
Sbjct: 61  VCASAAQWDSARAQLPKNIRVLEMSMNDAWFRDIGPTFVVCDRTSS-------VAGIDWS 113

Query: 121 FNSWGGVDDGCYRDWSLDLQVARKILSTERLPRFPHSMVLEGGSIHVDGEGTCLTTEECL 180
           FNSWGG ++GCY+DWSLD  VARKI+  ERL RFPHSMVLEGGSIHVDGEGTC+TTEECL
Sbjct: 114 FNSWGGAENGCYKDWSLDSLVARKIIEVERLTRFPHSMVLEGGSIHVDGEGTCITTEECL 173

Query: 181 LNKNRNPHL------------------------------TKGQIEN-------------- 196
           LN NRNPHL                              T G I+N              
Sbjct: 174 LNPNRNPHLTREAIEHQLKHYLGVTTIIWLPWGLYGDDDTNGHIDNMCCFVRPGVVMLAW 233

Query: 197 -----------ELKAY-------------LGVMKIIWLPRGLFGMIHDGEA------KPR 226
                       L+AY             L ++KI  +P  LF    + +       KPR
Sbjct: 234 TDDENDPQYERSLEAYSVLSKAIDAHGRTLQIIKI-HVPEPLFMTEEEADGLQALDGKPR 292

Query: 227 LAGTRLAASYVNFYIANGGIITPQFGDKKWDGEAVRVLSQAFPKYEVVGIERAREIVLGG 286
            AGTRLAASY+NFYIAN GI+ P FGD+K D EAV VL+ AFP +EV+ +  AREIVLGG
Sbjct: 293 NAGTRLAASYINFYIANKGIVAPAFGDEKRDKEAVDVLTAAFPDHEVITVSGAREIVLGG 352

Query: 287 GNIHCITQQQPA 298
           GNIHCITQQQPA
Sbjct: 353 GNIHCITQQQPA 364

Source: Picea sitchensis

Species: Picea sitchensis

Genus: Picea

Family: Pinaceae

Order: Coniferales

Class: Coniferopsida

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|225455756|ref|XP_002269435.1| PREDICTED: agmatine deiminase [Vitis vinifera] gi|297734125|emb|CBI15372.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|317106658|dbj|BAJ53162.1| JHL10I11.8 [Jatropha curcas] Back     alignment and taxonomy information
>gi|255541906|ref|XP_002512017.1| Agmatine deiminase, putative [Ricinus communis] gi|223549197|gb|EEF50686.1| Agmatine deiminase, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|449440870|ref|XP_004138207.1| PREDICTED: agmatine deiminase-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|224130088|ref|XP_002328651.1| predicted protein [Populus trichocarpa] gi|222838827|gb|EEE77178.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|147842216|emb|CAN66917.1| hypothetical protein VITISV_043040 [Vitis vinifera] Back     alignment and taxonomy information
>gi|356562666|ref|XP_003549590.1| PREDICTED: agmatine deiminase-like [Glycine max] Back     alignment and taxonomy information
>gi|357477779|ref|XP_003609175.1| Agmatine deiminase [Medicago truncatula] gi|355510230|gb|AES91372.1| Agmatine deiminase [Medicago truncatula] Back     alignment and taxonomy information
>gi|217072080|gb|ACJ84400.1| unknown [Medicago truncatula] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query307
TAIR|locus:2181499383 EMB1873 "EMBRYO DEFECTIVE 1873 0.700 0.561 0.720 4.5e-122
UNIPROTKB|Q87UB2368 aguA "Agmatine deiminase" [Pse 0.687 0.573 0.561 3.6e-82
UNIPROTKB|Q48Q55368 aguA "Agmatine deiminase" [Pse 0.687 0.573 0.552 2.5e-81
UNIPROTKB|Q725C6364 aguA1 "Putative agmatine deimi 0.641 0.541 0.567 1.7e-78
UNIPROTKB|Q725C4369 aguA2 "Putative agmatine deimi 0.671 0.558 0.497 2e-75
UNIPROTKB|Q8EIF2370 aguA "Putative agmatine deimin 0.674 0.559 0.465 1.4e-68
TIGR_CMR|SO_0887370 SO_0887 "conserved hypothetica 0.674 0.559 0.465 1.4e-68
TIGR_CMR|GSU_1028344 GSU_1028 "peptidylarginine dei 0.612 0.546 0.356 2.8e-40
TIGR_CMR|SPO_2980338 SPO_2980 "porphyromonas-type p 0.622 0.565 0.320 3.4e-34
UNIPROTKB|Q607A0367 MCA1861 "Putative uncharacteri 0.602 0.504 0.346 3e-31
TAIR|locus:2181499 EMB1873 "EMBRYO DEFECTIVE 1873" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 873 (312.4 bits), Expect = 4.5e-122, Sum P(2) = 4.5e-122
 Identities = 155/215 (72%), Positives = 175/215 (81%)

Query:     2 EMNGTPALHGYLMPAEWEPHSQCWMGWPERLDNWRDDALHAQRVFAKVATAISKFEPVTV 61
             E   +PA HGY MPAEW+ H+Q W+GWPER DNWR +AL AQRVFA VA AISKFEPVTV
Sbjct:     3 ESRESPAEHGYYMPAEWDSHAQTWIGWPERQDNWRHNALPAQRVFADVAKAISKFEPVTV 62

Query:    62 CASAAQWENARSQLPENIRVIEMSMNGSWFRDTGPTIVVNKSSASSGAQAPKVAGIDWNF 121
             CAS AQWENAR QLPE+IRV+EMSMN SWFRD+GPT +V K      +    +AGIDWNF
Sbjct:    63 CASPAQWENARKQLPEDIRVVEMSMNDSWFRDSGPTFIVRKRPVKLSSLNRNIAGIDWNF 122

Query:   122 NSWGGVDDGCYRDWSLDLQVARKILSTERLPRFPHSMVLEGGSIHVDGEGTCLTTEECLL 181
             N+WGG +DGCY DWS DL V+RKIL+ ER+PRF HSM+LEGGSIHVDGEGTCL TEECLL
Sbjct:   123 NAWGGANDGCYNDWSHDLLVSRKILALERIPRFQHSMILEGGSIHVDGEGTCLVTEECLL 182

Query:   182 NKNRNPHLTKGQIENELKAYLGVMKIIWLPRGLFG 216
             NKNRNPH++K QIE ELK YLGV   IWLPRGL+G
Sbjct:   183 NKNRNPHMSKEQIEEELKKYLGVQSFIWLPRGLYG 217
GO:0005634 "nucleus" evidence=ISM
GO:0009446 "putrescine biosynthetic process" evidence=IEA
GO:0009793 "embryo development ending in seed dormancy" evidence=NAS
GO:0047632 "agmatine deiminase activity" evidence=IEA;IDA
GO:0006596 "polyamine biosynthetic process" evidence=IDA
UNIPROTKB|Q87UB2 aguA "Agmatine deiminase" [Pseudomonas syringae pv. tomato str. DC3000 (taxid:223283)] Back     alignment and assigned GO terms
UNIPROTKB|Q48Q55 aguA "Agmatine deiminase" [Pseudomonas syringae pv. phaseolicola 1448A (taxid:264730)] Back     alignment and assigned GO terms
UNIPROTKB|Q725C6 aguA1 "Putative agmatine deiminase 1" [Listeria monocytogenes serotype 4b str. F2365 (taxid:265669)] Back     alignment and assigned GO terms
UNIPROTKB|Q725C4 aguA2 "Putative agmatine deiminase 2" [Listeria monocytogenes serotype 4b str. F2365 (taxid:265669)] Back     alignment and assigned GO terms
UNIPROTKB|Q8EIF2 aguA "Putative agmatine deiminase" [Shewanella oneidensis MR-1 (taxid:211586)] Back     alignment and assigned GO terms
TIGR_CMR|SO_0887 SO_0887 "conserved hypothetical protein" [Shewanella oneidensis MR-1 (taxid:211586)] Back     alignment and assigned GO terms
TIGR_CMR|GSU_1028 GSU_1028 "peptidylarginine deiminase-related protein" [Geobacter sulfurreducens PCA (taxid:243231)] Back     alignment and assigned GO terms
TIGR_CMR|SPO_2980 SPO_2980 "porphyromonas-type peptidyl-arginine deiminase family protein" [Ruegeria pomeroyi DSS-3 (taxid:246200)] Back     alignment and assigned GO terms
UNIPROTKB|Q607A0 MCA1861 "Putative uncharacterized protein" [Methylococcus capsulatus str. Bath (taxid:243233)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q5ZZK4AGUA_LEGPH3, ., 5, ., 3, ., 1, 20.37570.92500.8160yesno
Q5X986AGUA_LEGPA3, ., 5, ., 3, ., 1, 20.3750.91850.8150yesno
Q5X0L4AGUA_LEGPL3, ., 5, ., 3, ., 1, 20.37780.91850.8126yesno
Q8GWW7AGUA_ARATH3, ., 5, ., 3, ., 1, 20.72090.67750.5430yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

Prediction LevelEC numberConfidence of Prediction
3rd Layer3.5.3.120.946

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
GSVIVG00017570001
SubName- Full=Chromosome chr17 scaffold_16, whole genome shotgun sequence; (371 aa)
(Vitis vinifera)
Predicted Functional Partners:
ADC
RecName- Full=Arginine decarboxylase; EC=4.1.1.19; (713 aa)
•    •• 0.994
GSVIVG00037337001
SubName- Full=Chromosome undetermined scaffold_87, whole genome shotgun sequence; (311 aa)
•••  •• 0.993
GSVIVG00014587001
SubName- Full=Chromosome chr18 scaffold_1, whole genome shotgun sequence; (261 aa)
•     • 0.838
GSVIVG00019724001
RecName- Full=Pseudouridylate synthase; EC=5.4.99.-; (304 aa)
•     • 0.774
GSVIVG00034896001
SubName- Full=Chromosome chr4 scaffold_73, whole genome shotgun sequence; (407 aa)
•     • 0.726
GSVIVG00032252001
SubName- Full=Chromosome chr4 scaffold_6, whole genome shotgun sequence; (307 aa)
••   •• 0.711
GSVIVG00035063001
SubName- Full=Chromosome chr1 scaffold_75, whole genome shotgun sequence; (127 aa)
•     • 0.708
GSVIVG00028846001
SubName- Full=Chromosome chr1 scaffold_46, whole genome shotgun sequence; (297 aa)
•     • 0.677
GSVIVG00015322001
SubName- Full=Chromosome chr18 scaffold_1, whole genome shotgun sequence; (167 aa)
•     • 0.614
GSVIVG00026399001
SubName- Full=Chromosome chr15 scaffold_37, whole genome shotgun sequence; (348 aa)
      • 0.607

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query307
PLN02690374 PLN02690, PLN02690, Agmatine deiminase 1e-140
TIGR03380357 TIGR03380, agmatine_aguA, agmatine deiminase 1e-124
COG2957346 COG2957, COG2957, Peptidylarginine deiminase and r 1e-114
PRK13551362 PRK13551, PRK13551, agmatine deiminase; Provisiona 1e-113
pfam04371329 pfam04371, PAD_porph, Porphyromonas-type peptidyl- 1e-98
PLN02690374 PLN02690, PLN02690, Agmatine deiminase 4e-47
TIGR03380357 TIGR03380, agmatine_aguA, agmatine deiminase 3e-35
PRK13551362 PRK13551, PRK13551, agmatine deiminase; Provisiona 8e-35
pfam04371329 pfam04371, PAD_porph, Porphyromonas-type peptidyl- 3e-33
>gnl|CDD|178293 PLN02690, PLN02690, Agmatine deiminase Back     alignment and domain information 
 Score =  399 bits (1027), Expect = e-140
 Identities = 160/216 (74%), Positives = 173/216 (80%), Gaps = 2/216 (0%)

Query: 3   MNGTPALHGYLMPAEWEPHSQCWMGWPERLDNWRDDALHAQRVFAKVATAISKFEPVTVC 62
              TP   GY MPAEWEPH+ CWMGWPER DNWRD+A  AQ+ FA VA AISKFEPVTVC
Sbjct: 1   GRATPKELGYRMPAEWEPHAGCWMGWPERPDNWRDNAKPAQQQFAAVAKAISKFEPVTVC 60

Query: 63  ASAAQWENARSQLPE--NIRVIEMSMNGSWFRDTGPTIVVNKSSASSGAQAPKVAGIDWN 120
           AS AQWENAR QLP   N+RV+EMSMN SWFRDTGPT VV      S +   +VAGIDW+
Sbjct: 61  ASPAQWENAREQLPGVSNVRVVEMSMNDSWFRDTGPTFVVRDVPVDSSSGEREVAGIDWD 120

Query: 121 FNSWGGVDDGCYRDWSLDLQVARKILSTERLPRFPHSMVLEGGSIHVDGEGTCLTTEECL 180
           FN+WGG   GCY DWSLDL VARKIL  ERLPRFPHSM+LEGGSIHVDGEGTCLTTEECL
Sbjct: 121 FNAWGGALKGCYPDWSLDLLVARKILEAERLPRFPHSMILEGGSIHVDGEGTCLTTEECL 180

Query: 181 LNKNRNPHLTKGQIENELKAYLGVMKIIWLPRGLFG 216
           LN NRNPHLTK +IE ELK YLGV K+IWLPRGL+G
Sbjct: 181 LNPNRNPHLTKEEIEEELKEYLGVEKVIWLPRGLYG 216

Length = 374
>gnl|CDD|132423 TIGR03380, agmatine_aguA, agmatine deiminase Back     alignment and domain information
>gnl|CDD|225505 COG2957, COG2957, Peptidylarginine deiminase and related enzymes [Amino acid transport and metabolism] Back     alignment and domain information
>gnl|CDD|184135 PRK13551, PRK13551, agmatine deiminase; Provisional Back     alignment and domain information
>gnl|CDD|218048 pfam04371, PAD_porph, Porphyromonas-type peptidyl-arginine deiminase Back     alignment and domain information
>gnl|CDD|178293 PLN02690, PLN02690, Agmatine deiminase Back     alignment and domain information
>gnl|CDD|132423 TIGR03380, agmatine_aguA, agmatine deiminase Back     alignment and domain information
>gnl|CDD|184135 PRK13551, PRK13551, agmatine deiminase; Provisional Back     alignment and domain information
>gnl|CDD|218048 pfam04371, PAD_porph, Porphyromonas-type peptidyl-arginine deiminase Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 307
COG2957346 Peptidylarginine deiminase and related enzymes [Am 100.0
PLN02690374 Agmatine deiminase 100.0
PRK13551362 agmatine deiminase; Provisional 100.0
TIGR03380357 agmatine_aguA agmatine deiminase. Members of this 100.0
PF04371329 PAD_porph: Porphyromonas-type peptidyl-arginine de 100.0
PF02274281 Amidinotransf: Amidinotransferase; InterPro: IPR00 98.45
COG1834267 N-Dimethylarginine dimethylaminohydrolase [Amino a 98.37
PRK01388406 arginine deiminase; Provisional 96.58
TIGR01078405 arcA arginine deiminase. Arginine deiminase is the 96.01
COG2235409 ArcA Arginine deiminase [Amino acid transport and 92.35
>COG2957 Peptidylarginine deiminase and related enzymes [Amino acid transport and metabolism] Back     alignment and domain information 
Probab=100.00  E-value=6.8e-99  Score=696.40  Aligned_cols=284  Identities=51%  Similarity=0.902  Sum_probs=267.0

Q ss_pred             CCCCCCCCCCccCCCCCCcceeEEEecCCCCCCcchhhHHHHHHHHHHHHHHHcCccEEEEeCchhHHHHHhhCC-CCeE
Q 021828            2 EMNGTPALHGYLMPAEWEPHSQCWMGWPERLDNWRDDALHAQRVFAKVATAISKFEPVTVCASAAQWENARSQLP-ENIR   80 (307)
Q Consensus         2 ~~~~~~~~~~~r~paEwe~~~~~~lawP~~~~~w~~~l~~~~~~~~~la~~ia~~e~V~v~v~~~~~~~a~~~l~-~~v~   80 (307)
                      .+.+||+..+||||||||||+++||+|||+.++|+.++.+||++|+++|++||+||+|+|+|+.++++.++++|+ .+|+
T Consensus         5 ~~~~tpr~~gf~mpaEwep~~a~~m~wP~~~~~W~~~l~~aq~~f~~~~~aIarfe~V~l~V~~~~~~~a~a~l~~~~V~   84 (346)
T COG2957           5 PFKGTPRLLGFRMPAEWEPQEAIWMAWPHRPDDWRGHLKPAQQAFAALAKAIARFERVLLCVPDDDLEDARARLDDANVE   84 (346)
T ss_pred             CCCCCCchhcccCCcccCchhceeEeccCCccchhhhHHHHHHHHHHHHHHHhccceEEEEechHHHHHHHhhcCCCceE
Confidence            357899999999999999999999999999999999999999999999999999999999999999889999998 7999


Q ss_pred             EEEeCCCCccccccCceEEEcCCCCCCCCCCCceeEeeeeeccCCCCCCCCCCCCchhHHHHHHHHHhcC-CCcccccce
Q 021828           81 VIEMSMNGSWFRDTGPTIVVNKSSASSGAQAPKVAGIDWNFNSWGGVDDGCYRDWSLDLQVARKILSTER-LPRFPHSMV  159 (307)
Q Consensus        81 ~~~~~~~D~W~RD~gPi~v~~~~g~~~~~~~~~~~~vdf~FN~WG~k~~~~~~~~~~D~~v~~~l~~~~g-~~~~~~~lv  159 (307)
                      ++++++||+|+||+||+||++++|+        ++++||+||+|||    .|++|+.|++|+.++++..+ .++.+.++|
T Consensus        85 ~~~i~~nDtW~RDtGP~~~i~~~g~--------~~a~d~~FNaWGG----lkf~~e~Dd~Va~k~~~~~~k~~~~~~~fi  152 (346)
T COG2957          85 IVRIDTNDTWLRDTGPTIVINDKGD--------LRAVDFGFNAWGG----LKFPWELDDQVASKLAELLFKAPLKTDPFI  152 (346)
T ss_pred             EEEccCCCcHhhccCCcEEecCCCc--------EEEecceeccccc----cccccccchHHHHHHHHhhccCccccCCee
Confidence            9999999999999999999999998        9999999999997    36899999999999999876 667788999


Q ss_pred             ecCCceEECCCceEEEecceecCCCCCCCCCHHHHHHHHHHHhCCceEEEcCCCccC-----------------------
Q 021828          160 LEGGSIHVDGEGTCLTTEECLLNKNRNPHLTKGQIENELKAYLGVMKIIWLPRGLFG-----------------------  216 (307)
Q Consensus       160 lEGG~i~~dG~GtlltTe~~lln~nRNp~lsk~eie~~L~~~LGv~kvIwL~~G~~g-----------------------  216 (307)
                      ||||+|++||+||+|||++||||+||||+|||++||..|+++||++|||||++|+.|                       
T Consensus       153 LEGGsi~~dG~Gt~LTT~~CLLn~nRNPhl~~~~ie~~L~e~Lg~kkvlWL~~Gl~~D~TDgHiDtlarFv~p~~iv~~~  232 (346)
T COG2957         153 LEGGSIHSDGEGTLLTTEQCLLNDNRNPHLNQEGIENKLKEYLGAKKVLWLEYGLKNDDTDGHIDTLARFVAPGEIVLSW  232 (346)
T ss_pred             eecCceeecCceeEEeehHhhcCCCCCCCcCHHHHHHHHHHHhCccEEEEccCCCcCCcccchhhhhhhhcCCCeEEEEe
Confidence            999999999999999999999999999999999999999999999999999999877                       


Q ss_pred             -------------------------------cccCCCCccc--ccCccccccceeEEEECCeEEeccCCCchhHHHHHHH
Q 021828          217 -------------------------------MIHDGEAKPR--LAGTRLAASYVNFYIANGGIITPQFGDKKWDGEAVRV  263 (307)
Q Consensus       217 -------------------------------l~~~p~~~~~--~~g~~l~asY~Nfli~N~~VivP~fg~~~~D~~Al~~  263 (307)
                                                     |+++|-|.+.  ++|+|++|||+||||+|++||||+|+|+ +|+.|+++
T Consensus       233 ~dde~Dp~y~~~q~~~~~L~~~~d~~G~~~~l~~Lp~P~~~~~e~~~rL~aSY~NFlI~N~avIvP~y~D~-~D~~a~~~  311 (346)
T COG2957         233 CDDENDPHYAALQAMLEELKELRDAKGRPLKLHKLPIPKPVTDEDGERLPASYVNFLIINGAVIVPQYDDP-NDALALDV  311 (346)
T ss_pred             cCCCCChhHHHHHHHHHHHHhccccCCCeeEEEEcCCCcccccccCCCCcccceeEEEecCeEEeeccCCc-chHHHHHH
Confidence                                           3334433332  4589999999999999999999999999 99999999


Q ss_pred             HHHhCCCCEEEecCchhHHhhCCCceeeecCccCCC
Q 021828          264 LSQAFPKYEVVGIERAREIVLGGGNIHCITQQQPAI  299 (307)
Q Consensus       264 l~~~fP~r~Vv~I~~~~~l~~~GG~iHCiT~q~P~~  299 (307)
                      |+++||+|+||||+ |++|+.+||||||||||+|++
T Consensus       312 L~~~fP~reVVGVp-~r~il~ggGs~HCiTqQ~p~~  346 (346)
T COG2957         312 LQQAFPGREVVGVP-AREILLGGGSLHCITQQIPAG  346 (346)
T ss_pred             HHHhCCCCeEeccc-cHHheecCCceEEEeecccCC
Confidence            99999999999999 999999999999999999974

>PLN02690 Agmatine deiminase Back     alignment and domain information
>PRK13551 agmatine deiminase; Provisional Back     alignment and domain information
>TIGR03380 agmatine_aguA agmatine deiminase Back     alignment and domain information
>PF04371 PAD_porph: Porphyromonas-type peptidyl-arginine deiminase; InterPro: IPR007466 Peptidyl-arginine deiminase (PAD) enzymes catalyse the deimination of the guanidino group from carboxy-terminal arginine residues of various peptides to produce ammonia Back     alignment and domain information
>PF02274 Amidinotransf: Amidinotransferase; InterPro: IPR003198 This family contains glycine and inosamine amidinotransferases, enzymes which are involved in creatine and streptomycin biosynthesis respectively Back     alignment and domain information
>COG1834 N-Dimethylarginine dimethylaminohydrolase [Amino acid transport and metabolism] Back     alignment and domain information
>PRK01388 arginine deiminase; Provisional Back     alignment and domain information
>TIGR01078 arcA arginine deiminase Back     alignment and domain information
>COG2235 ArcA Arginine deiminase [Amino acid transport and metabolism] Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query307
3h7k_A383 Crystal Structure Of Arabidopsis Thaliana Agmatine 2e-90
3h7k_A383 Crystal Structure Of Arabidopsis Thaliana Agmatine 6e-33
3h7c_X383 Crystal Structure Of Arabidopsis Thaliana Agmatine 3e-90
3h7c_X383 Crystal Structure Of Arabidopsis Thaliana Agmatine 4e-34
1vkp_A383 X-Ray Structure Of Gene Product From Arabidopsis Th 4e-90
1vkp_A383 X-Ray Structure Of Gene Product From Arabidopsis Th 4e-34
2jer_A389 Agmatine Deiminase Of Enterococcus Faecalis Catalyz 5e-53
2jer_A389 Agmatine Deiminase Of Enterococcus Faecalis Catalyz 4e-12
2ewo_A377 X-Ray Structure Of Putative Agmatine Deiminase Q8dw 2e-51
2ewo_A377 X-Ray Structure Of Putative Agmatine Deiminase Q8dw 5e-16
1xkn_A355 Crystal Structure Of The Putative Peptidyl-Arginine 4e-26
1xkn_A355 Crystal Structure Of The Putative Peptidyl-Arginine 8e-12
1zbr_A349 Crystal Structure Of The Putative Arginine Deiminas 1e-23
3hvm_A330 Agmatine Deiminase From Helicobacter Pylori Length 5e-19
3hvm_A330 Agmatine Deiminase From Helicobacter Pylori Length 5e-06
2cmu_A342 Crystal Structure Of A Putative Peptidyl-Arginine D 4e-18
2cmu_A342 Crystal Structure Of A Putative Peptidyl-Arginine D 1e-05
>pdb|3H7K|A Chain A, Crystal Structure Of Arabidopsis Thaliana Agmatine Deiminase Complexed With A Covalently Bound Reaction Intermediate Length = 383 Back     alignment and structure 
Iteration: 1

 Score =  328 bits (841), Expect = 2e-90,   Method: Compositional matrix adjust.
 Identities = 151/215 (70%), Positives = 170/215 (79%)
Query: 2   EMNGTPALHGYLMPAEWEPHSQCWMGWPERLDNWRDDALHAQRVFAKVATAISKFEPVTV 61
           E   +PA HGY  PAEW+ H+Q W+GWPER DNWR +AL AQRVFA VA AISKFEPVTV
Sbjct: 3   ESRESPAEHGYYXPAEWDSHAQTWIGWPERQDNWRHNALPAQRVFAGVAKAISKFEPVTV 62
Query: 62  CASAAQWENARSQLPENIRVIEMSMNGSWFRDTGPTIVVNKSSASSGAQAPKVAGIDWNF 121
           CAS AQWENAR QLPE+IRV+E S N SWFRD+GPT +V K      +    +AGIDWNF
Sbjct: 63  CASPAQWENARKQLPEDIRVVEXSXNDSWFRDSGPTFIVRKRPVKLSSLNRNIAGIDWNF 122
Query: 122 NSWGGVDDGCYRDWSLDLQVARKILSTERLPRFPHSMVLEGGSIHVDGEGTCLTTEECLL 181
           N+WGG +DGCY DWS DL V+RKIL+ ER+PRF HS +LEGGSIHVDGEGTCL TEECLL
Sbjct: 123 NAWGGANDGCYNDWSHDLLVSRKILALERIPRFQHSXILEGGSIHVDGEGTCLVTEECLL 182
Query: 182 NKNRNPHLTKGQIENELKAYLGVMKIIWLPRGLFG 216
           NKNRNPH +K QIE ELK YLGV   IWLPRGL+G
Sbjct: 183 NKNRNPHXSKEQIEEELKKYLGVQSFIWLPRGLYG 217
>pdb|3H7K|A Chain A, Crystal Structure Of Arabidopsis Thaliana Agmatine Deiminase Complexed With A Covalently Bound Reaction Intermediate Length = 383 Back     alignment and structure
>pdb|3H7C|X Chain X, Crystal Structure Of Arabidopsis Thaliana Agmatine Deiminase From Cell Free Expression Length = 383 Back     alignment and structure
>pdb|3H7C|X Chain X, Crystal Structure Of Arabidopsis Thaliana Agmatine Deiminase From Cell Free Expression Length = 383 Back     alignment and structure
>pdb|1VKP|A Chain A, X-Ray Structure Of Gene Product From Arabidopsis Thaliana At5g08170, Agmatine Iminohydrolase Length = 383 Back     alignment and structure
>pdb|1VKP|A Chain A, X-Ray Structure Of Gene Product From Arabidopsis Thaliana At5g08170, Agmatine Iminohydrolase Length = 383 Back     alignment and structure
>pdb|2JER|A Chain A, Agmatine Deiminase Of Enterococcus Faecalis Catalyzing Its Reaction. Length = 389 Back     alignment and structure
>pdb|2JER|A Chain A, Agmatine Deiminase Of Enterococcus Faecalis Catalyzing Its Reaction. Length = 389 Back     alignment and structure
>pdb|2EWO|A Chain A, X-Ray Structure Of Putative Agmatine Deiminase Q8dw17, Northeast Structural Genomics Target Smr6. Length = 377 Back     alignment and structure
>pdb|2EWO|A Chain A, X-Ray Structure Of Putative Agmatine Deiminase Q8dw17, Northeast Structural Genomics Target Smr6. Length = 377 Back     alignment and structure
>pdb|1XKN|A Chain A, Crystal Structure Of The Putative Peptidyl-Arginine Deiminase From Chlorobium Tepidum, Nesg Target Ctr21 Length = 355 Back     alignment and structure
>pdb|1XKN|A Chain A, Crystal Structure Of The Putative Peptidyl-Arginine Deiminase From Chlorobium Tepidum, Nesg Target Ctr21 Length = 355 Back     alignment and structure
>pdb|1ZBR|A Chain A, Crystal Structure Of The Putative Arginine Deiminase From Porphyromonas Gingivalis, Northeast Structural Genomics Target Pgr3 Length = 349 Back     alignment and structure
>pdb|3HVM|A Chain A, Agmatine Deiminase From Helicobacter Pylori Length = 330 Back     alignment and structure
>pdb|3HVM|A Chain A, Agmatine Deiminase From Helicobacter Pylori Length = 330 Back     alignment and structure
>pdb|2CMU|A Chain A, Crystal Structure Of A Putative Peptidyl-Arginine Deiminase Length = 342 Back     alignment and structure
>pdb|2CMU|A Chain A, Crystal Structure Of A Putative Peptidyl-Arginine Deiminase Length = 342 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query307
1zbr_A349 AAQ65385, conserved hypothetical protein; alpha-be 9e-84
3h7c_X383 Agmatine deiminase; structural genomics, protein s 2e-81
3h7c_X383 Agmatine deiminase; structural genomics, protein s 8e-37
2jer_A389 Agmatine deiminase; hydrolase, tetramer, AGDI, 5- 1e-79
1xkn_A355 Putative peptidyl-arginine deiminase; alpha-beta p 8e-76
2ewo_A377 Putative agmatine deiminase; Q8DW17, SMR6, X-RAY, 1e-71
3hvm_A330 Agmatine deiminase; hydrolase; 2.10A {Helicobacter 5e-71
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 7e-04
>1zbr_A AAQ65385, conserved hypothetical protein; alpha-beta protein., structural genomics, PSI, protein struc initiative; 2.60A {Porphyromonas gingivalis} SCOP: d.126.1.6 Length = 349 Back     alignment and structure
 Score =  255 bits (652), Expect = 9e-84
 Identities = 75/344 (21%), Positives = 119/344 (34%), Gaps = 67/344 (19%)

Query: 12  YLMPAEWEPHSQCWMGWPERLDNWRDDALHAQRVFAKVATAISKFEPVTVCASAAQ--WE 69
            L   EW P     + WP    +W       +  F ++ATAI + E + V     +  + 
Sbjct: 4   RLFLPEWAPQEAVQLTWPHDRTDWAYMLDEVETCFVRIATAILRHERLIVVCPDRKRVFG 63

Query: 70  NARSQLPENIRVIEMSMNGSWFRDTGPTIVVNKSSASSGAQAPKVAGIDWNFNSWGGVDD 129
               +L   +   E+  N +W RD G   ++            +    D+ FN WG    
Sbjct: 64  LLPPELHHRLYCFELPSNDTWARDHGGISLLADG---------RPMIADFAFNGWGMKFA 114

Query: 130 GCYRDWSLDLQVARKILSTERLPRFPHSMVLEGGSIHVDGEGTCLTTEECLLNKNRNPHL 189
             + +       A  + +         + VLEGG++  DGEGT LTT+ CL   NRN  L
Sbjct: 115 AHHDNLITRRLHALGLFAEGVTLDNRLAFVLEGGALETDGEGTLLTTDSCLFEPNRNAGL 174

Query: 190 TKGQIENELKAYLGVMKIIWLPRGLFGMIH-----DGEAKPRLAGTRLAASYVN------ 238
           ++  I + LK  LGV +++ L  G           D  A+     T +     +      
Sbjct: 175 SRTAIIDTLKESLGVSRVLSLRHGALAGDDTDGHIDTLARFVDTRTIVYVRSEDPSDEHY 234

Query: 239 ------------FYIANGGIIT----PQFGDKKWDGE----------------------- 259
                           +G        P         +                       
Sbjct: 235 SDLTAMEQELKELRRPDGQPYRLVPLPMAEALYDGADRLPATYANFLIINGAVLVPTYDS 294

Query: 260 -----AVRVLSQAFPKYEVVGIERAREIVLGGGNIHCITQQQPA 298
                A+ V+   FP  EV+GI+  R +V   G++HC+T Q P 
Sbjct: 295 HLDAVALSVMQGLFPDREVIGID-CRPLVKQHGSLHCVTMQYPQ 337
>3h7c_X Agmatine deiminase; structural genomics, protein structure initiative, center for eukaryotic structural genomics, CESG; HET: MSE 211 1PE; 1.50A {Arabidopsis thaliana} PDB: 1vkp_A* 2q3u_A* 3h7k_A* Length = 383 Back     alignment and structure
>3h7c_X Agmatine deiminase; structural genomics, protein structure initiative, center for eukaryotic structural genomics, CESG; HET: MSE 211 1PE; 1.50A {Arabidopsis thaliana} PDB: 1vkp_A* 2q3u_A* 3h7k_A* Length = 383 Back     alignment and structure
>2jer_A Agmatine deiminase; hydrolase, tetramer, AGDI, 5- fold pseudosymmetric structure, agmatine degradation pathway, covalent amidino adduct; HET: AGT; 1.65A {Enterococcus faecalis} SCOP: d.126.1.6 Length = 389 Back     alignment and structure
>1xkn_A Putative peptidyl-arginine deiminase; alpha-beta protein, NESG, structural genomics, protein struc initiative, PSI; 1.60A {Chlorobium tepidum} SCOP: d.126.1.6 Length = 355 Back     alignment and structure
>2ewo_A Putative agmatine deiminase; Q8DW17, SMR6, X-RAY, structural genomics, PSI, protein structure initiative; 2.90A {Streptococcus mutans} SCOP: d.126.1.6 Length = 377 Back     alignment and structure
>3hvm_A Agmatine deiminase; hydrolase; 2.10A {Helicobacter pylori} PDB: 2cmu_A Length = 330 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query307
3h7c_X383 Agmatine deiminase; structural genomics, protein s 100.0
3hvm_A330 Agmatine deiminase; hydrolase; 2.10A {Helicobacter 100.0
2jer_A389 Agmatine deiminase; hydrolase, tetramer, AGDI, 5- 100.0
2ewo_A377 Putative agmatine deiminase; Q8DW17, SMR6, X-RAY, 100.0
1xkn_A355 Putative peptidyl-arginine deiminase; alpha-beta p 100.0
1zbr_A349 AAQ65385, conserved hypothetical protein; alpha-be 100.0
2ci1_A275 NG, NG-dimethylarginine dimethylaminohydrolase 1; 99.88
1h70_A255 NG, NG-dimethylarginine dimethylaminohydrolase; DD 99.87
1jdw_A423 L-arginine\:glycine amidinotransferase; creatine b 99.72
1bwd_A348 ADT, protein (inosamine-phosphate amidinotransfera 99.61
2a9g_A418 Arginine deiminase; arginine degradation pathway, 99.35
3i4a_A308 N(G),N(G)-dimethylarginine dimethylaminohydrolase 99.33
4e4j_A433 Arginine deiminase; L-arginine, L-citrulline, NH3, 97.59
1s9r_A410 Arginine deiminase; hydrolase, 5-fold pseudo-symme 96.36
>3h7c_X Agmatine deiminase; structural genomics, protein structure initiative, center for eukaryotic structural genomics, CESG; HET: MSE 211 1PE; 1.50A {Arabidopsis thaliana} SCOP: d.126.1.6 PDB: 1vkp_A* 2q3u_A* 3h7k_A* Back     alignment and structure
Probab=100.00  E-value=1.6e-100  Score=739.53  Aligned_cols=299  Identities=73%  Similarity=1.247  Sum_probs=270.2

Q ss_pred             CCCCCCCCCccCCCCCCcceeEEEecCCCCCCcchhhHHHHHHHHHHHHHHHcCccEEEEeCchhHHHHHhhCCCCeEEE
Q 021828            3 MNGTPALHGYLMPAEWEPHSQCWMGWPERLDNWRDDALHAQRVFAKVATAISKFEPVTVCASAAQWENARSQLPENIRVI   82 (307)
Q Consensus         3 ~~~~~~~~~~r~paEwe~~~~~~lawP~~~~~w~~~l~~~~~~~~~la~~ia~~e~V~v~v~~~~~~~a~~~l~~~v~~~   82 (307)
                      ..++|++.+||||||||||++|||+|||+.++|+..++++|++|++||++||+||||+|+|++++.+.|+++|+++|+++
T Consensus         4 ~~~~p~~~~~rmPaEweph~~~wm~WP~~~~~W~~~l~~a~~~~~~ia~aIa~~EpV~i~v~~~~~~~a~~~l~~~v~~~   83 (383)
T 3h7c_X            4 SRESPAEHGYYMPAEWDSHAQTWIGWPERQDNWRHNALPAQRVFAGVAKAISKFEPVTVCASPAQWENARKQLPEDIRVV   83 (383)
T ss_dssp             CSSCTGGGTCBCCCTTSCEEEEEECCCCCTTTSTGGGHHHHHHHHHHHHHHHTTSCEEEEECGGGHHHHHHHSCTTSEEE
T ss_pred             CCCCcccCCcccCCCcChhhcEEEEeCCCCcchhHHHHHHHHHHHHHHHHHhcCCcEEEEECHHHHHHHHHhccCCcEEE
Confidence            46789999999999999999999999999999999999999999999999999999999999998889999999999999


Q ss_pred             EeCCCCccccccCceEEEcCCCCCCCCCCCceeEeeeeeccCCCCCCCCCCCCchhHHHHHHHHHhcCCCcccccceecC
Q 021828           83 EMSMNGSWFRDTGPTIVVNKSSASSGAQAPKVAGIDWNFNSWGGVDDGCYRDWSLDLQVARKILSTERLPRFPHSMVLEG  162 (307)
Q Consensus        83 ~~~~~D~W~RD~gPi~v~~~~g~~~~~~~~~~~~vdf~FN~WG~k~~~~~~~~~~D~~v~~~l~~~~g~~~~~~~lvlEG  162 (307)
                      ++++||+|+||+||+||++++|..++...+++++|||+||+||+|++++|++|++|++++++|++..|+++++++|||||
T Consensus        84 ~~~~nD~W~RD~GP~fv~~~~g~~~~~~~~~~~~vdf~FNgWGgk~~~~y~~~~~D~~va~~v~~~~g~~~~~~~lVlEG  163 (383)
T 3h7c_X           84 EMSMNDSWFRDSGPTFIVRKRPVKLSSLNRNIAGIDWNFNAWGGANDGCYNDWSHDLLVSRKILALERIPRFQHSMILEG  163 (383)
T ss_dssp             ECCCSSCCHHHHSCEEEECCC-------CCSEEEEEEECCTTTHHHHCSBSCCTTHHHHHHHHHHHHTCCEEEEEEECCG
T ss_pred             EcCCCCchhhccCceEEEeCCCccccccccceEEEcceeecCcCcccccCCCCccHHHHHHHHHHHhCCCcccCCeeecC
Confidence            99999999999999999987651100111238999999999999877778899999999999999999999999999999


Q ss_pred             CceEECCCceEEEecceecCCCCCCCCCHHHHHHHHHHHhCCceEEEcCCCccC--------------------------
Q 021828          163 GSIHVDGEGTCLTTEECLLNKNRNPHLTKGQIENELKAYLGVMKIIWLPRGLFG--------------------------  216 (307)
Q Consensus       163 G~i~~dG~GtlltTe~~lln~nRNp~lsk~eie~~L~~~LGv~kvIwL~~G~~g--------------------------  216 (307)
                      |||++||+||+||||+||||+||||+|||+|||++|+++||++||||||+|+.|                          
T Consensus       164 GsIe~DG~GTlltTe~cLLn~nRNP~lsk~eIE~~L~~~LGv~kvIWL~~Gl~gDddTdgHID~larFv~pg~Vl~~~~~  243 (383)
T 3h7c_X          164 GSIHVDGEGTCLVTEECLLNKNRNPHMSKEQIEEELKKYLGVQSFIWLPRGLYGDEDTNGHIDNMCCFARPGVVLLSWTD  243 (383)
T ss_dssp             GGEEECSSSEEEEEHHHHTCTTTCTTSCHHHHHHHHHHHHCCCEEEEESCCCTTCGGGTCCGGGTEEEEETTEEEEEECC
T ss_pred             CcEEECCCceEEEEhhhccCCCCCCCCCHHHHHHHHHHHhCCcEEEEeCCCcCCCCCcCcceeeeEEecCCCEEEEEccC
Confidence            999999999999999999999999999999999999999999999999998755                          


Q ss_pred             -----------------------------cccCCCCcc-------------------cccCccccccceeEEEECCeEEe
Q 021828          217 -----------------------------MIHDGEAKP-------------------RLAGTRLAASYVNFYIANGGIIT  248 (307)
Q Consensus       217 -----------------------------l~~~p~~~~-------------------~~~g~~l~asY~Nfli~N~~Viv  248 (307)
                                                   |+++|.|.+                   |.+|+|++|||+||||+|++|||
T Consensus       244 d~~dp~y~~~~~~~~~L~~~tda~Gr~~~i~~lp~P~~~~~~~~e~~g~~~~~~~~~r~~g~rl~aSY~Nfli~Ng~Viv  323 (383)
T 3h7c_X          244 DETDPQYERSVEALSVLSNSIDARGRKIQVIKLYIPEPLYMTEEESSGITQDGEAIPRLAGTRLAASYVNFYIANGGIIA  323 (383)
T ss_dssp             CTTSHHHHHHHHHHHHHHTCBCTTSCBCEEEEEECCSCCBCCHHHHHTSCCCSSBCCCCTTCBCCCCTTCCEEETTEEEE
T ss_pred             CCCCcCHHHHHHHHHHHHhhhhccCCceEEEEecCCCccccchhhccccccccccccccCCCcccccccceeeECCEEEE
Confidence                                         222333222                   23588999999999999999999


Q ss_pred             ccCCCchhHHHHHHHHHHhCCCCEEEecCchhHHhhCCCceeeecCccCCCCc
Q 021828          249 PQFGDKKWDGEAVRVLSQAFPKYEVVGIERAREIVLGGGNIHCITQQQPAIPT  301 (307)
Q Consensus       249 P~fg~~~~D~~Al~~l~~~fP~r~Vv~I~~~~~l~~~GG~iHCiT~q~P~~~~  301 (307)
                      |+||++++|++|+++||++||+|+||+|++|++|+.+||||||+|||+|+...
T Consensus       324 P~fgd~~~D~~A~~~l~~~fP~R~Vv~I~~~~~i~~ggG~iHCiTqQ~P~~~~  376 (383)
T 3h7c_X          324 PQFGDPIRDKEAIRVLSDTFPHHSVVGIENAREIVLAGGNIHCITQQQPAEPT  376 (383)
T ss_dssp             ECCCCTTHHHHHHHHHHHHCTTSEEEEETTTHHHHTTTCCHHHHEEEEECCCC
T ss_pred             ecCCCcccHHHHHHHHHHHCCCCEEEeCccHHHHHhcCCcceEcCCccccCcc
Confidence            99999758999999999999999999997799999999999999999998543
>3hvm_A Agmatine deiminase; hydrolase; 2.10A {Helicobacter pylori} SCOP: d.126.1.6 PDB: 2cmu_A Back     alignment and structure
>2jer_A Agmatine deiminase; hydrolase, tetramer, AGDI, 5- fold pseudosymmetric structure, agmatine degradation pathway, covalent amidino adduct; HET: AGT; 1.65A {Enterococcus faecalis} SCOP: d.126.1.6 Back     alignment and structure
>2ewo_A Putative agmatine deiminase; Q8DW17, SMR6, X-RAY, structural genomics, PSI, protein structure initiative; 2.90A {Streptococcus mutans} SCOP: d.126.1.6 Back     alignment and structure
>1xkn_A Putative peptidyl-arginine deiminase; alpha-beta protein, NESG, structural genomics, protein struc initiative, PSI; 1.60A {Chlorobium tepidum} SCOP: d.126.1.6 Back     alignment and structure
>1zbr_A AAQ65385, conserved hypothetical protein; alpha-beta protein., structural genomics, PSI, protein struc initiative; 2.60A {Porphyromonas gingivalis} SCOP: d.126.1.6 Back     alignment and structure
>2ci1_A NG, NG-dimethylarginine dimethylaminohydrolase 1; NOS regulation, S-nitrosylation, zinc, MMA, ADMA, acetylation, metal-binding; HET: KOR K1R CIT; 1.08A {Bos taurus} PDB: 2c6z_A* 2ci3_A 2ci4_A 2ci5_A* 2ci6_A 2ci7_A 2jaj_A* 2jai_A* Back     alignment and structure
>1h70_A NG, NG-dimethylarginine dimethylaminohydrolase; DDAH, nitric oxide synthase inhibitor; HET: CIR; 1.8A {Pseudomonas aeruginosa} SCOP: d.126.1.3 PDB: 3rhy_A 3bpb_A* Back     alignment and structure
>1jdw_A L-arginine\:glycine amidinotransferase; creatine biosynthesis, catalytic triad, reaction mechanism, novel fold, fivefold pseudosymmetry; 1.90A {Homo sapiens} SCOP: d.126.1.2 PDB: 2jdw_A 3jdw_A* 4jdw_A* 8jdw_A 5jdw_A 6jdw_A* 1jdx_A* 7jdw_A 9jdw_A* 2jdx_A Back     alignment and structure
>1bwd_A ADT, protein (inosamine-phosphate amidinotransferase); streptomycin; 3.10A {Streptomyces griseus} SCOP: d.126.1.2 Back     alignment and structure
>2a9g_A Arginine deiminase; arginine degradation pathway, catalyti mechanism, hydrolase; HET: ARG; 2.30A {Pseudomonas aeruginosa} SCOP: d.126.1.4 PDB: 1rxx_A 2abr_A* 2aci_A 2aaf_A* Back     alignment and structure
>3i4a_A N(G),N(G)-dimethylarginine dimethylaminohydrolase 1; DDAH, nitric oxide synthase regulation, acetylation, metal-binding, zinc; HET: LN5; 1.90A {Homo sapiens} PDB: 3i2e_A* 3p8e_A* 3p8p_A* Back     alignment and structure
>4e4j_A Arginine deiminase; L-arginine, L-citrulline, NH3, hydrolase; 2.30A {Mycoplasma penetrans} Back     alignment and structure
>1s9r_A Arginine deiminase; hydrolase, 5-fold pseudo-symmetric domain, 5- helix bundle domain, raction intermediate; HET: ARG; 1.60A {Mycoplasma arginini} SCOP: d.126.1.4 PDB: 1lxy_A* Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 307
d1vkpa_372 d.126.1.6 (A:) Agmatine iminohydrolase {Thale-cres 5e-80
d1vkpa_372 d.126.1.6 (A:) Agmatine iminohydrolase {Thale-cres 4e-37
d1xkna_353 d.126.1.6 (A:) Putative peptidyl-arginine deiminas 1e-71
d2jera1364 d.126.1.6 (A:2-365) Agmatine iminohydrolase {Enter 1e-71
d1zbra1339 d.126.1.6 (A:3-341) Putative peptidyl-arginine dei 2e-71
d2ewoa1369 d.126.1.6 (A:2-370) Agmatine iminohydrolase {Strep 7e-66
d2ewoa1369 d.126.1.6 (A:2-370) Agmatine iminohydrolase {Strep 3e-31
d2cmua1330 d.126.1.6 (A:3-332) Putative peptidyl-arginine dei 3e-63
>d1vkpa_ d.126.1.6 (A:) Agmatine iminohydrolase {Thale-cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 372 Back     information, alignment and structure

class: Alpha and beta proteins (a+b)
fold: Pentein, beta/alpha-propeller
superfamily: Pentein
family: Porphyromonas-type peptidylarginine deiminase
domain: Agmatine iminohydrolase
species: Thale-cress (Arabidopsis thaliana) [TaxId: 3702]

 Score =  245 bits (626), Expect = 5e-80
 Identities = 154/211 (72%), Positives = 174/211 (82%)

Query: 6   TPALHGYLMPAEWEPHSQCWMGWPERLDNWRDDALHAQRVFAKVATAISKFEPVTVCASA 65
           +PA HGY MPAEW+ H+Q W+GWPER DNWR +AL AQRVFA VA AISKFEPVTVCAS 
Sbjct: 3   SPAEHGYYMPAEWDSHAQTWIGWPERQDNWRHNALPAQRVFAGVAKAISKFEPVTVCASP 62

Query: 66  AQWENARSQLPENIRVIEMSMNGSWFRDTGPTIVVNKSSASSGAQAPKVAGIDWNFNSWG 125
           AQWENAR QLPE+IRV+EMSMN SWFRD+GPT +V K      +    +AGIDWNFN+WG
Sbjct: 63  AQWENARKQLPEDIRVVEMSMNDSWFRDSGPTFIVRKRPVKLSSLNRNIAGIDWNFNAWG 122

Query: 126 GVDDGCYRDWSLDLQVARKILSTERLPRFPHSMVLEGGSIHVDGEGTCLTTEECLLNKNR 185
           G +DGCY DWS DL V+RKIL+ ER+PRF HSM+LEGGSIHVDGEGTCL TEECLLNKNR
Sbjct: 123 GANDGCYNDWSHDLLVSRKILALERIPRFQHSMILEGGSIHVDGEGTCLVTEECLLNKNR 182

Query: 186 NPHLTKGQIENELKAYLGVMKIIWLPRGLFG 216
           NPH++K QIE ELK YLGV   IWLPRGL+G
Sbjct: 183 NPHMSKEQIEEELKKYLGVQSFIWLPRGLYG 213
>d1vkpa_ d.126.1.6 (A:) Agmatine iminohydrolase {Thale-cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 372 Back     information, alignment and structure
>d1xkna_ d.126.1.6 (A:) Putative peptidyl-arginine deiminase {Chlorobium tepidum [TaxId: 1097]} Length = 353 Back     information, alignment and structure
>d2jera1 d.126.1.6 (A:2-365) Agmatine iminohydrolase {Enterococcus faecalis [TaxId: 1351]} Length = 364 Back     information, alignment and structure
>d1zbra1 d.126.1.6 (A:3-341) Putative peptidyl-arginine deiminase {Porphyromonas gingivalis [TaxId: 837]} Length = 339 Back     information, alignment and structure
>d2ewoa1 d.126.1.6 (A:2-370) Agmatine iminohydrolase {Streptococcus mutans [TaxId: 1309]} Length = 369 Back     information, alignment and structure
>d2ewoa1 d.126.1.6 (A:2-370) Agmatine iminohydrolase {Streptococcus mutans [TaxId: 1309]} Length = 369 Back     information, alignment and structure
>d2cmua1 d.126.1.6 (A:3-332) Putative peptidyl-arginine deiminase {Helicobacter pylori J99 [TaxId: 85963]} Length = 330 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query307
d2jera1364 Agmatine iminohydrolase {Enterococcus faecalis [Ta 100.0
d1vkpa_372 Agmatine iminohydrolase {Thale-cress (Arabidopsis 100.0
d2ewoa1369 Agmatine iminohydrolase {Streptococcus mutans [Tax 100.0
d1xkna_353 Putative peptidyl-arginine deiminase {Chlorobium t 100.0
d2cmua1330 Putative peptidyl-arginine deiminase {Helicobacter 100.0
d1zbra1339 Putative peptidyl-arginine deiminase {Porphyromona 100.0
d1h70a_255 Dimethylarginine dimethylaminohydrolase DDAH {Pseu 98.13
d1s9ra_409 Arginine deiminase {Mycoplasma arginini [TaxId: 20 98.08
d1rxxa_412 Arginine deiminase {Pseudomonas aeruginosa [TaxId: 97.62
d1bwda_348 L-arginine: inosamine-phosphate amidinotransferase 97.58
d1jdwa_360 L-arginine: glycine amidinotransferase {Human (Hom 97.08
>d2jera1 d.126.1.6 (A:2-365) Agmatine iminohydrolase {Enterococcus faecalis [TaxId: 1351]} Back     information, alignment and structure
class: Alpha and beta proteins (a+b)
fold: Pentein, beta/alpha-propeller
superfamily: Pentein
family: Porphyromonas-type peptidylarginine deiminase
domain: Agmatine iminohydrolase
species: Enterococcus faecalis [TaxId: 1351]

Probab=100.00  E-value=1.4e-95  Score=702.14  Aligned_cols=288  Identities=47%  Similarity=0.849  Sum_probs=269.1

Q ss_pred             CCCCCCCCCCCccCCCCCCcceeEEEecCCCCCCcchhhHHHHHHHHHHHHHHHcCccEEEEeCchhHHHHHhhCCCCeE
Q 021828            1 MEMNGTPALHGYLMPAEWEPHSQCWMGWPERLDNWRDDALHAQRVFAKVATAISKFEPVTVCASAAQWENARSQLPENIR   80 (307)
Q Consensus         1 ~~~~~~~~~~~~r~paEwe~~~~~~lawP~~~~~w~~~l~~~~~~~~~la~~ia~~e~V~v~v~~~~~~~a~~~l~~~v~   80 (307)
                      +++++||++.|||||||||||+++||+|||+.++|+..+.+++++|++||++||++|||+|+|++++.+.+++.+.++|+
T Consensus         3 ~~~~~tP~~~g~rmPaEwep~~~~~l~wP~~~~~w~~~~~~~~~~~~~i~~~ia~~e~V~v~~~~~~~~~~~~~~~~~v~   82 (364)
T d2jera1           3 RIVGSTPKQDGFRMPGEFEPQEKVWMIWPERPDNWRDGGKPVQEAFTNVAKAISQFTPMNVVVSQQQFQNCRRQLPPEIT   82 (364)
T ss_dssp             BCCSCCHHHHTCBCCCTTSCEEEEEEECCCCTTTSGGGGHHHHHHHHHHHHHHHTTSCEEEEECTTTHHHHHHHSCTTSE
T ss_pred             cccCCCccccCCCcCCCcchhheEEEEcCCCCcchhhHHHHHHHHHHHHHHHHhCCCeEEEEECcHHHHHHHHhCccceE
Confidence            46799999999999999999999999999999999999999999999999999999999999999998899999999999


Q ss_pred             EEEeCCCCccccccCceEEEcCCCCCCCCCCCceeEeeeeeccCCCCCCCCCCCCchhHHHHHHHHHhcCCCccc-ccce
Q 021828           81 VIEMSMNGSWFRDTGPTIVVNKSSASSGAQAPKVAGIDWNFNSWGGVDDGCYRDWSLDLQVARKILSTERLPRFP-HSMV  159 (307)
Q Consensus        81 ~~~~~~~D~W~RD~gPi~v~~~~g~~~~~~~~~~~~vdf~FN~WG~k~~~~~~~~~~D~~v~~~l~~~~g~~~~~-~~lv  159 (307)
                      ++++++||+|+||+||+||.+++|+        +++|||+||+||+|.+++|++|..|++++.++++.++++.+. ++||
T Consensus        83 ~~~~~~dD~W~RD~GPi~v~~~~g~--------~~~vdf~FN~wG~k~~~~~~~~~~D~~~~~~ia~~~~~~~~~~~~lv  154 (364)
T d2jera1          83 VYEMSNNDAWVRDCGPSFVINDHGE--------IRGVDWTFNAWGGLVDGLYFPWDQDDLVAQKICEIEHVDSYRTDDFV  154 (364)
T ss_dssp             EEECCCSSSCHHHHSCEEEECTTSC--------EEEEEEECCTTTHHHHCSSSCCTTGGGHHHHHHHHHTCCEEEEEEEE
T ss_pred             EEEccCCChHhhcceeEEEEecCCc--------eEeecccccCCcccccccccccccHHHHHHHHHHHhccccccccCeE
Confidence            9999999999999999999988887        999999999999887777899999999999999999999765 4899


Q ss_pred             ecCCceEECCCceEEEecceecCCCCCCCCCHHHHHHHHHHHhCCceEEEcCCCccC-----------------------
Q 021828          160 LEGGSIHVDGEGTCLTTEECLLNKNRNPHLTKGQIENELKAYLGVMKIIWLPRGLFG-----------------------  216 (307)
Q Consensus       160 lEGG~i~~dG~GtlltTe~~lln~nRNp~lsk~eie~~L~~~LGv~kvIwL~~G~~g-----------------------  216 (307)
                      +|||||++||+||+|||++||+|+||||++||+|||++||++||++||||||+|+.|                       
T Consensus       155 lEGG~i~~dG~GtlltTe~~ll~~nRNp~ls~~~ie~~Lk~~LGv~~viwl~~gl~~DdTdGHID~~arFi~~~~il~~~  234 (364)
T d2jera1         155 LEGGSFHVDGQGTVLTTEMCLLSEGRNPQLSKEAIEQKLCDYLNVEKVLWLGDGIDPEETNGHVDDVACFIAPGEVACIY  234 (364)
T ss_dssp             CCGGGEEECSSSEEEEEHHHHTSTTTCTTSCHHHHHHHHHHHHTCSEEEEECCCSCTTTTSSCGGGTEEEEETTEEEEEC
T ss_pred             EcCCceEECCCceEEEehhhhhccCCCCCCCHHHHHHHHHHHhCCceeEEecCCcccCCCCCCccceEEEeCCCceEEEe
Confidence            999999999999999999999999999999999999999999999999999988765                       


Q ss_pred             -------------------------------cccCCCC------------------cccccCccccccceeEEEECCeEE
Q 021828          217 -------------------------------MIHDGEA------------------KPRLAGTRLAASYVNFYIANGGII  247 (307)
Q Consensus       217 -------------------------------l~~~p~~------------------~~~~~g~~l~asY~Nfli~N~~Vi  247 (307)
                                                     |+++|.|                  .++.+|.+++|||+|||++|++||
T Consensus       235 ~~d~~~~~~~~~~~~~~~L~~~~da~G~~~~i~~lp~P~~~~~~~~~~~~~~~~~~~~~~~g~~l~aSY~Nfli~N~~Vi  314 (364)
T d2jera1         235 TEDQNSPFYEAAQDAYQRLLKMTDAKGRQLKVHKLCCPVKNVTIKGSFKIDFVEGTMPREDGDICIASYMNFLITNDGVI  314 (364)
T ss_dssp             CCCTTSTTHHHHHHHHHHHHTCBCTTCCBCEEEEECCCSSCEECCTTSCCCCCTTSCCCCTTCEECCCTTCCEEETTEEE
T ss_pred             cCCCCCccHHHHHHHHHHHHhhhhhcCCCceEEeccCCCcccccccccccccccCcccccCCCCcceeeEEEEEECCEEE
Confidence                                           1122222                  112457899999999999999999


Q ss_pred             eccCCCchhHHHHHHHHHHhCCCCEEEecCchhHHhhCCCceeeecCccCC
Q 021828          248 TPQFGDKKWDGEAVRVLSQAFPKYEVVGIERAREIVLGGGNIHCITQQQPA  298 (307)
Q Consensus       248 vP~fg~~~~D~~Al~~l~~~fP~r~Vv~I~~~~~l~~~GG~iHCiT~q~P~  298 (307)
                      ||+||++ +|++|+++||++||+|+||+|+ |++|+.+||||||+|||+|+
T Consensus       315 vP~fg~~-~D~~Al~~l~~~fP~r~Vv~I~-~~~i~~~gG~iHCiT~q~P~  363 (364)
T d2jera1         315 VPQYGDE-NDRLALEQVQTMFPDKKIVGVN-TVEVVYGGGNIHXITQQEPK  363 (364)
T ss_dssp             EEECSCT-THHHHHHHHHHHSTTSEEEEEE-CHHHHTTTCCTGGGCEEEEC
T ss_pred             EecCCCH-HHHHHHHHHHHHCCCCEEEEEe-cHHHHhcCCccchhhhcCCC
Confidence            9999999 9999999999999999999999 99999999999999999996
>d1vkpa_ d.126.1.6 (A:) Agmatine iminohydrolase {Thale-cress (Arabidopsis thaliana) [TaxId: 3702]} Back     information, alignment and structure
>d2ewoa1 d.126.1.6 (A:2-370) Agmatine iminohydrolase {Streptococcus mutans [TaxId: 1309]} Back     information, alignment and structure
>d1xkna_ d.126.1.6 (A:) Putative peptidyl-arginine deiminase {Chlorobium tepidum [TaxId: 1097]} Back     information, alignment and structure
>d2cmua1 d.126.1.6 (A:3-332) Putative peptidyl-arginine deiminase {Helicobacter pylori J99 [TaxId: 85963]} Back     information, alignment and structure
>d1zbra1 d.126.1.6 (A:3-341) Putative peptidyl-arginine deiminase {Porphyromonas gingivalis [TaxId: 837]} Back     information, alignment and structure
>d1h70a_ d.126.1.3 (A:) Dimethylarginine dimethylaminohydrolase DDAH {Pseudomonas aeruginosa [TaxId: 287]} Back     information, alignment and structure
>d1s9ra_ d.126.1.4 (A:) Arginine deiminase {Mycoplasma arginini [TaxId: 2094]} Back     information, alignment and structure
>d1rxxa_ d.126.1.4 (A:) Arginine deiminase {Pseudomonas aeruginosa [TaxId: 287]} Back     information, alignment and structure
>d1bwda_ d.126.1.2 (A:) L-arginine: inosamine-phosphate amidinotransferase {Streptomyces griseus [TaxId: 1911]} Back     information, alignment and structure
>d1jdwa_ d.126.1.2 (A:) L-arginine: glycine amidinotransferase {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure