Citrus Sinensis ID: 021881

---

Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300------
Protein Sequence
MPDRIEDFDFYSHKLPSFSQVVEELKELWGMALPMTGMNILVFIRAVVSVLFLGRLGSLELAGGALSIGFTNITGYSVLVGLASGLEPVCSQAYGSKNWDLLSLSLQRMILILFFAIIPISLLWLNLETVMIFMGQDKDITAMAATYTLYALPDLLTNTLLQPLRVFLRSQKVTKPMMWCTLVAVMFHVPLNYCLVMKLKLGVPGVAMASVVCNLNMLKIGFSGLWFGLLSAQAACAVSILYVVLVRTDWEAEAMKAMKLTSLEISTFNAGAGDTNEEEEEEESKGLLLYGICFRLLDAFFSGWGI
Secondary Structure (PSIPRED)
cccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHcccc
Secondary Structure Prediction (SSPRO)
ccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHEEcccccccEEEEEEEEccccccccccccHHHHHHHHHHHHHHHHHccccccccHHHHHcccEEcHHHHHHHHHHHccccc
Coil and Loop (DISEMBL)
mpdriedfdfyshklpsFSQVVEELKELWGMALPMTGMNILVFIRAVVSVLFLGrlgslelaggalsigftnITGYSVLVGLAsglepvcsqaygsknwDLLSLSLQRMILILFFAIIPISLLWLNLETVMIFMGQDKDITAMAATYTLyalpdlltntlLQPLRVFLRsqkvtkpmmWCTLVAVMFHVPLNYCLVMKLKLGVPGVAMASVVCNLNMLKIGFSGLWFGLLSAQAACAVSILYVVLVRTDWEAEAMKAMKLTSLEIStfnagagdtneeeeeEESKGLLLYGICFRLLDAFFSGWGI
Flexible Loop (DISEMBL)
mpdriedfdfyshklpsfSQVVEELKELWGMALPMTGMNILVFIRAVVSVLFLGRLGSLELAGGALSIGFTNITGYSVLVGLASGLEPVCSQAYGSKNWDLLSLSLQRMILILFFAIIPISLLWLNLETVMIFMGQDKDITAMAATYTLYALPDLLTNTLLQPLRVFLRSQKVTKPMMWCTLVAVMFHVPLNYCLVMKLKLGVPGVAMASVVCNLNMLKIGFSGLWFGLLSAQAACAVSILYVVLVRTDWEAEAMKAMKLTSLEISTFnagagdtneeEEEEESKGLLLYGICFRLLDAFFSGWGI
Low Complexity Region (SEG)
MPDRIEDFDFYSHKLPSFSQVVEELKELWGMALPMTGMNILVFIRAVVSVLFlgrlgslelaggalsigFTNITGYSVLVGLASGLEPVCSQAYGSKNWDLLSLSLQRMILILFFAIIPISLLWLNLETVMIFMGQDKDItamaatytlyalPDLLTNTLLQPLRVFLRSQKVTKPMMWCTLVAVMFHVPLNYCLVMKLKLGVPGVAMASVVCNLNMLKIGFSGLWFGLLSAQAACAVSILYVVLVRTDWEAEAMKAMKLTSLEISTFNAGAGDTNeeeeeeeSKGLLLYGICFRLLDAFFSGWGI
Disordered region (IsUnstruct)
*******FDFYSHKLPSFSQVVEELKELWGMALPMTGMNILVFIRAVVSVLFLGRLGSLELAGGALSIGFTNITGYSVLVGLASGLEPVCSQAYGSKNWDLLSLSLQRMILILFFAIIPISLLWLNLETVMIFMGQDKDITAMAATYTLYALPDLLTNTLLQPLRVFLRSQKVTKPMMWCTLVAVMFHVPLNYCLVMKLKLGVPGVAMASVVCNLNMLKIGFSGLWFGLLSAQAACAVSILYVVLVRTDWEAEAMKAMKLTSLEI*****************************************
Disordered Region (DISOPRED)
****************SFSQVVEELKELWGMALPMTGMNILVFIRAVVSVLFLGRLGSLELAGGALSIGFTNITGYSVLVGLASGLEPVCSQAYGSKNWDLLSLSLQRMILILFFAIIPISLLWLNLETVMIFMGQDKDITAMAATYTLYALPDLLTNTLLQPLRVFLRSQKVTKPMMWCTLVAVMFHVPLNYCLVMKLKLGVPGVAMASVVCNLNMLKIGFSGLWFGLLSAQAACAVSILYVVLVRTDWEAEAMKAMKLTSLEISTFNAGAGDTNEEEEEEESKGLLLYGICFRLLDAFFSGWGI
Disordered Region (DISEMBL)
MPDRIEDFDFYSHKLPSFSQVVEELKELWGMALPMTGMNILVFIRAVVSVLFLGRLGSLELAGGALSIGFTNITGYSVLVGLASGLEPVCSQAYGSKNWDLLSLSLQRMILILFFAIIPISLLWLNLETVMIFMGQDKDITAMAATYTLYALPDLLTNTLLQPLRVFLRSQKVTKPMMWCTLVAVMFHVPLNYCLVMKLKLGVPGVAMASVVCNLNMLKIGFSGLWFGLLSAQAACAVSILYVVLVRTDWEAEAMKAMKLTSLEISTFN***************KGLLLYGICFRLLDAFFSGWGI
Disordered Region (DISPRO)
************HKLPSFSQVVEELKELWGMALPMTGMNILVFIRAVVSVLFLGRLGSLELAGGALSIGFTNITGYSVLVGLASGLEPVCSQAYGSKNWDLLSLSLQRMILILFFAIIPISLLWLNLETVMIFMGQDKDITAMAATYTLYALPDLLTNTLLQPLRVFLRSQKVTKPMMWCTLVAVMFHVPLNYCLVMKLKLGVPGVAMASVVCNLNMLKIGFSGLWFGLLSAQAACAVSILYVVLVRTDWEAEAMKAMKLTSLEISTFNAGAG*****EE**ESKGLLLYGICFRLLDAFFSGWGI
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHoo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHoooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHHooooHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHHiiiHHHHHHHHHHHHHHHHHHHHHHHHHoooHHHHHHHHHHHHHHHHHHHiiiHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHiiii
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHoooooooooooooooooooHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MPDRIEDFDFYSHKLPSFSQVVEELKELWGMALPMTGMNILVFIRAVVSVLFLGRLGSLELAGGALSIGFTNITGYSVLVGLASGLEPVCSQAYGSKNWDLLSLSLQRMILILFFAIIPISLLWLNLETVMIFMGQDKDITAMAATYTLYALPDLLTNTLLQPLRVFLRSQKVTKPMMWCTLVAVMFHVPLNYCLVMKLKLGVPGVAMASVVCNLNMLKIGFSGLWFGLLSAQAACAVSILYVVLVRTDWEAEAMKAMKLTSLEISTFNAGAGDTNEEEEEEESKGLLLYGICFRLLDAFFSGWGI
Positional Conservation
no confident homologs detected

---

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	306	2.2.26 [Sep-21-2011]
Q8RWF5	483	MATE efflux family protei	no	no	0.607	0.385	0.365	7e-31
Q9SIA1	477	MATE efflux family protei	no	no	0.607	0.389	0.333	1e-28
Q8GXM8	476	MATE efflux family protei	no	no	0.607	0.390	0.350	2e-28
Q9SIA4	476	MATE efflux family protei	no	no	0.620	0.399	0.373	6e-28
Q9SIA5	476	MATE efflux family protei	no	no	0.604	0.388	0.357	2e-27
Q9SIA3	476	MATE efflux family protei	no	no	0.620	0.399	0.347	2e-27
Q9LUH3	469	MATE efflux family protei	no	no	0.689	0.449	0.300	9e-23
Q9LUH2	477	MATE efflux family protei	no	no	0.624	0.400	0.308	2e-22
A4IIS8	574	Multidrug and toxin extru	yes	no	0.568	0.303	0.350	4e-21
Q8K0H1	567	Multidrug and toxin extru	yes	no	0.637	0.343	0.328	8e-21

>sp|Q8RWF5|MATE9_ARATH MATE efflux family protein 9 OS=Arabidopsis thaliana GN=DTXL5 PE=2 SV=1

 Score =  134 bits (338), Expect = 7e-31,   Method: Compositional matrix adjust.
 Identities = 68/186 (36%), Positives = 112/186 (60%)

Query: 24  ELKELWGMALPMTGMNILVFIRAVVSVLFLGRLGSLELAGGALSIGFTNITGYSVLVGLA 83
           ELK L  MALPM  + +  ++  V+SV+  G    L+L+G AL+  FTN++G+SV+ GLA
Sbjct: 30  ELKNLSRMALPMATVTVAQYLLPVISVMVAGHRSELQLSGVALATSFTNVSGFSVMFGLA 89

Query: 84  SGLEPVCSQAYGSKNWDLLSLSLQRMILILFFAIIPISLLWLNLETVMIFMGQDKDITAM 143
             LE +C QAYG+K +  +       I+     ++ IS+LW  ++ + + +GQD DI+ +
Sbjct: 90  GALETLCGQAYGAKQYAKIGTYTFSAIVSNVPIVVLISILWFYMDKLFVSLGQDPDISKV 149

Query: 144 AATYTLYALPDLLTNTLLQPLRVFLRSQKVTKPMMWCTLVAVMFHVPLNYCLVMKLKLGV 203
           A +Y +  +P LL   + QPL  FL++Q +  P+++C +  ++FH+P+   LV    LG 
Sbjct: 150 AGSYAVCLIPALLAQAVQQPLTRFLQTQGLVLPLLYCAITTLLFHIPVCLILVYAFGLGS 209

Query: 204 PGVAMA 209
            G A+A
Sbjct: 210 NGAALA 215

Arabidopsis thaliana (taxid: 3702)

>sp|Q9SIA1|MATE8_ARATH MATE efflux family protein 8 OS=Arabidopsis thaliana GN=DTXL4 PE=3 SV=2

 Score =  127 bits (319), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 62/186 (33%), Positives = 108/186 (58%)

Query: 24  ELKELWGMALPMTGMNILVFIRAVVSVLFLGRLGSLELAGGALSIGFTNITGYSVLVGLA 83
           ELK +  MA PM  + +  ++  V+SV+  G  G L+L+G  L+  F N++G+ ++ GL 
Sbjct: 30  ELKNVSSMAAPMATVTVSQYLLPVISVMVAGHCGELQLSGVTLATAFANVSGFGIMYGLV 89

Query: 84  SGLEPVCSQAYGSKNWDLLSLSLQRMILILFFAIIPISLLWLNLETVMIFMGQDKDITAM 143
             LE +C QAYG+K +  +       I+     ++ IS+LW  ++ + + +GQD DI+ +
Sbjct: 90  GALETLCGQAYGAKQYTKIGTYTFSAIVSNVPIVVLISILWFYMDKLFVSLGQDPDISKV 149

Query: 144 AATYTLYALPDLLTNTLLQPLRVFLRSQKVTKPMMWCTLVAVMFHVPLNYCLVMKLKLGV 203
           A +Y +  +P LL   + QPL  FL++Q +  P+++C +  ++FH+P+   LV    LG 
Sbjct: 150 AGSYAVCLIPALLAQAVQQPLTRFLQTQGLVLPLLYCAITTLLFHIPVCLILVYAFGLGS 209

Query: 204 PGVAMA 209
            G A+A
Sbjct: 210 NGAALA 215

Arabidopsis thaliana (taxid: 3702)

>sp|Q8GXM8|MATE7_ARATH MATE efflux family protein 7 OS=Arabidopsis thaliana GN=DTXL3 PE=2 SV=1

 Score =  126 bits (317), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 68/194 (35%), Positives = 118/194 (60%), Gaps = 8/194 (4%)

Query: 20  QVVEELKELWGMALPMTGMNILVFIRAVVSVLFLGRLGSLELAGGALSIGFTNITGYSVL 79
           QV  ELK++  +A PM  + I  ++  V+SV+  G +G LELAG AL+  FTN++G+S++
Sbjct: 23  QVTVELKKVSRLAAPMATVTIAQYLLPVISVMVAGHIGELELAGVALATSFTNVSGFSIM 82

Query: 80  VGLASGLEPVCSQAYGSKNWDLLSL----SLQRMILILFFAIIPISLLWLNLETVMIFMG 135
            GL   LE +C QAYG++ ++ +      ++   I I F     IS+LW+ +E ++I +G
Sbjct: 83  FGLVGALETLCGQAYGAEQYEKIGTYTYSAMASNIPICFI----ISILWIYIEKLLITLG 138

Query: 136 QDKDITAMAATYTLYALPDLLTNTLLQPLRVFLRSQKVTKPMMWCTLVAVMFHVPLNYCL 195
           Q+ DI+ +A +Y+L+ +P L  + +  PL  FL +Q +   +++  +  ++FH+ + + L
Sbjct: 139 QEPDISRVAGSYSLWLVPALFAHAIFLPLTRFLLAQGLVISLLYSAMTTLLFHIAVCWTL 198

Query: 196 VMKLKLGVPGVAMA 209
           V  L LG  G A+A
Sbjct: 199 VFALGLGSNGAAIA 212

Arabidopsis thaliana (taxid: 3702)

>sp|Q9SIA4|MATE5_ARATH MATE efflux family protein 5 OS=Arabidopsis thaliana GN=DTXL1 PE=3 SV=1

 Score =  125 bits (313), Expect = 6e-28,   Method: Compositional matrix adjust.
 Identities = 71/190 (37%), Positives = 114/190 (60%)

Query: 20  QVVEELKELWGMALPMTGMNILVFIRAVVSVLFLGRLGSLELAGGALSIGFTNITGYSVL 79
           QV  ELK++  +A PM  + I  ++  V+SV+  G  G L+L+G AL+  FTN++G+S+L
Sbjct: 23  QVTVELKKVSSLAAPMAAVTIAQYLLPVISVMVAGHNGELQLSGVALATSFTNVSGFSIL 82

Query: 80  VGLASGLEPVCSQAYGSKNWDLLSLSLQRMILILFFAIIPISLLWLNLETVMIFMGQDKD 139
            GLA  LE +C QAYG+K ++ +               + IS+LW+ +E ++I +GQD D
Sbjct: 83  FGLAGALETLCGQAYGAKQYEKIGTYTYSATASNIPICVLISVLWIYIEKLLISLGQDPD 142

Query: 140 ITAMAATYTLYALPDLLTNTLLQPLRVFLRSQKVTKPMMWCTLVAVMFHVPLNYCLVMKL 199
           I+ +A +Y L+ +P L  +    PL  FL +Q +  P+++CTL  ++FH+P+ +  V   
Sbjct: 143 ISRVAGSYALWLIPALFAHAFFIPLTRFLLAQGLVLPLLYCTLTTLLFHIPVCWAFVYAF 202

Query: 200 KLGVPGVAMA 209
            LG  G AMA
Sbjct: 203 GLGSNGAAMA 212

Arabidopsis thaliana (taxid: 3702)

>sp|Q9SIA5|DTX1_ARATH MATE efflux family protein DTX1 OS=Arabidopsis thaliana GN=DTX1 PE=2 SV=1

 Score =  123 bits (308), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 69/193 (35%), Positives = 114/193 (59%), Gaps = 8/193 (4%)

Query: 24  ELKELWGMALPMTGMNILVFIRAVVSVLFLGRLGSLELAGGALSIGFTNITGYSVLVGLA 83
           ELK +  +A PM  + I  ++  V+SV+  G  G L+L+G AL+  FTN+TG+S++ GL 
Sbjct: 27  ELKRVSRLAAPMATVTIAQYLLPVISVMVAGHNGELQLSGVALANSFTNVTGFSIMCGLV 86

Query: 84  SGLEPVCSQAYGSKNWDLLSL----SLQRMILILFFAIIPISLLWLNLETVMIFMGQDKD 139
             LE +C QAYG+K ++ +      ++   I I F     IS+LWL +E ++I +GQD +
Sbjct: 87  GALETLCGQAYGAKQYEKIGTYAYSAIASNIPICFL----ISILWLYIEKILISLGQDPE 142

Query: 140 ITAMAATYTLYALPDLLTNTLLQPLRVFLRSQKVTKPMMWCTLVAVMFHVPLNYCLVMKL 199
           I+ +A +Y  + +P L    ++ PL  FL +Q +  P+++  +  ++FHV + + LV   
Sbjct: 143 ISRIAGSYAFWLIPALFGQAIVIPLSRFLLTQGLVIPLLFTAVTTLLFHVLVCWTLVFLF 202

Query: 200 KLGVPGVAMASVV 212
            LG  G AMA+ V
Sbjct: 203 GLGCNGPAMATSV 215

Efflux carrier for plant-derived alkaloids, antibiotics, heavy metal and other toxic compounds. Involved in cadmium detoxification. Requires probably a proton-motive force for the efflux.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9SIA3|MATE6_ARATH MATE efflux family protein 6 OS=Arabidopsis thaliana GN=DTXL2 PE=3 SV=2

 Score =  122 bits (307), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 66/190 (34%), Positives = 114/190 (60%)

Query: 20  QVVEELKELWGMALPMTGMNILVFIRAVVSVLFLGRLGSLELAGGALSIGFTNITGYSVL 79
           Q+  ELK++  +A+PM  + I  ++  V+SV+  G  G L+L+G AL+  FTN++G+S++
Sbjct: 23  QLNVELKKVSRLAVPMATVTIAQYLLPVISVMVAGHNGELQLSGVALATSFTNVSGFSIM 82

Query: 80  VGLASGLEPVCSQAYGSKNWDLLSLSLQRMILILFFAIIPISLLWLNLETVMIFMGQDKD 139
            GL   LE +  QAYG+K ++ +       I       + IS+LW+ +E ++I +GQD D
Sbjct: 83  FGLVGSLETLSGQAYGAKQYEKMGTYTYSAISSNIPICVLISILWIYMEKLLISLGQDPD 142

Query: 140 ITAMAATYTLYALPDLLTNTLLQPLRVFLRSQKVTKPMMWCTLVAVMFHVPLNYCLVMKL 199
           I+ +A +Y L  +P L  + ++ PL  FL +Q +  P+++  L  ++FH+ + + LV  L
Sbjct: 143 ISRVAGSYALRLIPTLFAHAIVLPLTRFLLAQGLVLPLLYFALTTLLFHIAVCWTLVSAL 202

Query: 200 KLGVPGVAMA 209
            LG  G A+A
Sbjct: 203 GLGSNGAALA 212

Arabidopsis thaliana (taxid: 3702)

>sp|Q9LUH3|LAL5_ARATH MATE efflux family protein LAL5 OS=Arabidopsis thaliana GN=LAL5 PE=2 SV=1

 Score =  107 bits (268), Expect = 9e-23,   Method: Compositional matrix adjust.
 Identities = 65/216 (30%), Positives = 111/216 (51%), Gaps = 5/216 (2%)

Query: 2   PDRIEDFDFYSHKLPSFSQV-----VEELKELWGMALPMTGMNILVFIRAVVSVLFLGRL 56
           P   +D D    +  S + V     VEE K     +LPM   N+  +   + SV+F  +L
Sbjct: 4   PTSKDDHDGEGGRDKSSTFVQKLIDVEEAKTQIIYSLPMIFTNLFYYCIPLTSVMFASQL 63

Query: 57  GSLELAGGALSIGFTNITGYSVLVGLASGLEPVCSQAYGSKNWDLLSLSLQRMILILFFA 116
           G LELAG  L+  +  +TG++ + GL+  LE +C Q +G+K++ +L + LQ   ++    
Sbjct: 64  GQLELAGATLANSWATVTGFAFMTGLSGALETLCGQGFGAKSYRMLGIHLQSSCIVSLVF 123

Query: 117 IIPISLLWLNLETVMIFMGQDKDITAMAATYTLYALPDLLTNTLLQPLRVFLRSQKVTKP 176
            I I++LW   E+V + + QD  I+  AA Y  Y  P LL    LQ +  F ++Q +  P
Sbjct: 124 TILITILWFFTESVFLLLRQDPSISKQAALYMKYLAPGLLAYGFLQNILRFCQTQCIVTP 183

Query: 177 MMWCTLVAVMFHVPLNYCLVMKLKLGVPGVAMASVV 212
           ++  + + ++ ++   Y LV    LG  G  +A+ +
Sbjct: 184 LVLFSFLPLVINIGTTYALVHLAGLGFIGAPIATSI 219

Arabidopsis thaliana (taxid: 3702)

>sp|Q9LUH2|ALF5_ARATH MATE efflux family protein ALF5 OS=Arabidopsis thaliana GN=ALF5 PE=2 SV=1

 Score =  106 bits (264), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 59/191 (30%), Positives = 100/191 (52%)

Query: 22  VEELKELWGMALPMTGMNILVFIRAVVSVLFLGRLGSLELAGGALSIGFTNITGYSVLVG 81
           VEE K     +LPM   N+  +   + SV+F   LG LELAG  L+  +  ++G++ +VG
Sbjct: 37  VEEAKAQMIYSLPMILTNVFYYCIPITSVMFASHLGQLELAGATLANSWATVSGFAFMVG 96

Query: 82  LASGLEPVCSQAYGSKNWDLLSLSLQRMILILFFAIIPISLLWLNLETVMIFMGQDKDIT 141
           L+  LE +C Q +G+K + +L + LQ   ++     I I++ W   E++   + QD  I+
Sbjct: 97  LSGSLETLCGQGFGAKRYRMLGVHLQSSCIVSLVFSILITIFWFFTESIFGLLRQDPSIS 156

Query: 142 AMAATYTLYALPDLLTNTLLQPLRVFLRSQKVTKPMMWCTLVAVMFHVPLNYCLVMKLKL 201
             AA Y  Y  P LL    LQ +  F ++Q +  P++  + V ++ ++   Y LV    L
Sbjct: 157 KQAALYMKYQAPGLLAYGFLQNILRFCQTQSIIAPLVIFSFVPLVINIATAYVLVYVAGL 216

Query: 202 GVPGVAMASVV 212
           G  G  +A+ +
Sbjct: 217 GFIGAPIATSI 227

Required for protection of the roots from inhibitory compounds. When expressed in an heterologous system, confers resistance to tetramethylammonium chloride.

Arabidopsis thaliana (taxid: 3702)

>sp|A4IIS8|S47A1_XENTR Multidrug and toxin extrusion protein 1 OS=Xenopus tropicalis GN=slc47a1 PE=2 SV=1

 Score =  102 bits (254), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 61/174 (35%), Positives = 96/174 (55%)

Query: 39  NILVFIRAVVSVLFLGRLGSLELAGGALSIGFTNITGYSVLVGLASGLEPVCSQAYGSKN 98
            +++F+ ++VS +F G LG +EL   +L+I   NITG +V  GLA   + + SQ +G  N
Sbjct: 63  QLMIFLISIVSSIFCGHLGKVELDAVSLAITIINITGVAVGTGLAGACDTLISQTFGGSN 122

Query: 99  WDLLSLSLQRMILILFFAIIPISLLWLNLETVMIFMGQDKDITAMAATYTLYALPDLLTN 158
             L+ + LQR ILIL     P   L +N E++++   QD +++ +   Y L  LP L   
Sbjct: 123 LKLVGIILQRGILILLLFCFPCWALLINTESILLLFRQDPEVSKLTQIYVLIFLPALPAA 182

Query: 159 TLLQPLRVFLRSQKVTKPMMWCTLVAVMFHVPLNYCLVMKLKLGVPGVAMASVV 212
            L Q L  +L++Q +  P +    +A +F+   NY L+  L LGV G A A+ V
Sbjct: 183 FLYQLLAKYLQNQGIIYPQVLTGFIANIFNALFNYILLYVLGLGVMGSACANTV 236

Solute transporter for tetraethylammonium (TEA), cimetidine, metformin, guanidine, N-methylnicotinamide (NMN) and also the zwitterionic cephalosporin cephalexin. Responsible for the secretion of cationic drugs across the brush border membranes.

Xenopus tropicalis (taxid: 8364)

>sp|Q8K0H1|S47A1_MOUSE Multidrug and toxin extrusion protein 1 OS=Mus musculus GN=Slc47a1 PE=1 SV=2

 Score =  101 bits (251), Expect = 8e-21,   Method: Compositional matrix adjust.
 Identities = 65/198 (32%), Positives = 104/198 (52%), Gaps = 3/198 (1%)

Query: 15  LPSFSQVVEELKELWGMALPMTGMNILVFIRAVVSVLFLGRLGSLELAGGALSIGFTNIT 74
           LP F   +EEL+ L  +A P     +++F+ + +S +F G LG LEL    L+I   N+T
Sbjct: 28  LPGF---LEELRALLVLAGPAFLAQLMMFLISFISSVFCGHLGKLELDAVTLAIAVINVT 84

Query: 75  GYSVLVGLASGLEPVCSQAYGSKNWDLLSLSLQRMILILFFAIIPISLLWLNLETVMIFM 134
           G SV  GL+S  + + SQ YGS+N   + + LQR  LIL     P   L++N E +++  
Sbjct: 85  GISVGHGLSSACDTLISQTYGSQNLKHVGVILQRGTLILLLCCFPCWALFINTEQILLLF 144

Query: 135 GQDKDITAMAATYTLYALPDLLTNTLLQPLRVFLRSQKVTKPMMWCTLVAVMFHVPLNYC 194
            QD D++ +  TY +  +P L    L      +L +Q +  P +   + A + +   NY 
Sbjct: 145 RQDPDVSRLTQTYVMIFIPALPAAFLYTLQVKYLLNQGIVLPQIMTGIAANLVNALANYV 204

Query: 195 LVMKLKLGVPGVAMASVV 212
            +  L LGV G A+A+ +
Sbjct: 205 FLYHLHLGVMGSALANTI 222

Solute transporter for tetraethylammonium (TEA), 1-methyl-4-phenylpyridinium (MPP), cimetidine, N-methylnicotinamide (NMN), metformin, creatinine, guanidine, procainamide, topotecan, estrone sulfate, acyclovir, ganciclovir and also the zwitterionic cephalosporin, cephalexin and cephradin. Seems to also play a role in the uptake of oxaliplatin (a new platinum anticancer agent). Able to transport paraquat (PQ or N,N-dimethyl-4-4'-bipiridinium); a widely used herbicid. Responsible for the secretion of cationic drugs across the brush border membranes.

Mus musculus (taxid: 10090)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	306
356502315	1271	PREDICTED: uncharacterized protein LOC10	0.689	0.166	0.816	5e-97
297841939	509	mate efflux family protein [Arabidopsis	0.709	0.426	0.740	1e-91
15217599	510	protein novel ion carrier-2 [Arabidopsis	0.705	0.423	0.743	2e-91
356561367	485	PREDICTED: MATE efflux family protein 9-	0.627	0.395	0.831	3e-88
224135467	447	predicted protein [Populus trichocarpa]	0.679	0.465	0.788	1e-87
224146436	447	predicted protein [Populus trichocarpa]	0.679	0.465	0.783	2e-87
225460462	500	PREDICTED: MATE efflux family protein 9-	0.705	0.432	0.761	2e-86
449443875	493	PREDICTED: multidrug and toxin extrusion	0.712	0.442	0.713	6e-85
449517445	316	PREDICTED: MATE efflux family protein 5-	0.712	0.689	0.713	1e-84
255586819	300	multidrug resistance pump, putative [Ric	0.643	0.656	0.766	4e-81

>gi|356502315|ref|XP_003519965.1| PREDICTED: uncharacterized protein LOC100794753 [Glycine max]

 Score =  360 bits (924), Expect = 5e-97,   Method: Compositional matrix adjust.
 Identities = 174/213 (81%), Positives = 196/213 (92%)

Query: 6   EDFDFYSHKLPSFSQVVEELKELWGMALPMTGMNILVFIRAVVSVLFLGRLGSLELAGGA 65
           +D DF+SHK P+ SQV+EE+KELWGMALP+T MN+LVF+RAVVSVLFLGRLGSLELAGGA
Sbjct: 769 KDRDFFSHKFPTTSQVMEEMKELWGMALPITAMNMLVFVRAVVSVLFLGRLGSLELAGGA 828

Query: 66  LSIGFTNITGYSVLVGLASGLEPVCSQAYGSKNWDLLSLSLQRMILILFFAIIPISLLWL 125
           LSIGFTNITGYSVLVGLA+GLEPVCSQAYGSKNWDLLSLSLQRM+LIL  AI+PISLLWL
Sbjct: 829 LSIGFTNITGYSVLVGLAAGLEPVCSQAYGSKNWDLLSLSLQRMVLILLMAIVPISLLWL 888

Query: 126 NLETVMIFMGQDKDITAMAATYTLYALPDLLTNTLLQPLRVFLRSQKVTKPMMWCTLVAV 185
           NLE +M+FMGQD  IT MA+ Y  Y+LPDLLTNTLLQPLRVFLRSQKVTKPMM+C+LVAV
Sbjct: 889 NLERIMLFMGQDSAITGMASLYCFYSLPDLLTNTLLQPLRVFLRSQKVTKPMMYCSLVAV 948

Query: 186 MFHVPLNYCLVMKLKLGVPGVAMASVVCNLNML 218
           +FHVPLNY LV+ + LGVPGVAMASV+ NLNM+
Sbjct: 949 LFHVPLNYLLVVVMGLGVPGVAMASVMTNLNMV 981

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297841939|ref|XP_002888851.1| mate efflux family protein [Arabidopsis lyrata subsp. lyrata] gi|297334692|gb|EFH65110.1| mate efflux family protein [Arabidopsis lyrata subsp. lyrata]

 Score =  342 bits (878), Expect = 1e-91,   Method: Compositional matrix adjust.
 Identities = 168/227 (74%), Positives = 191/227 (84%)

Query: 1   MPDRIEDFDFYSHKLPSFSQVVEELKELWGMALPMTGMNILVFIRAVVSVLFLGRLGSLE 60
           M D+ +  DF SHK P+  QV+EELKELW M LP+T MN LV++RAVVSVLFLGRLGSLE
Sbjct: 1   MADKTQSDDFISHKNPTLPQVIEELKELWAMVLPITAMNCLVYVRAVVSVLFLGRLGSLE 60

Query: 61  LAGGALSIGFTNITGYSVLVGLASGLEPVCSQAYGSKNWDLLSLSLQRMILILFFAIIPI 120
           LAGGALSIGFTNITGYSVLVGLASGLEPVCSQAYGSKNWDLL+LSL RM++IL  A +PI
Sbjct: 61  LAGGALSIGFTNITGYSVLVGLASGLEPVCSQAYGSKNWDLLTLSLHRMVVILLIASVPI 120

Query: 121 SLLWLNLETVMIFMGQDKDITAMAATYTLYALPDLLTNTLLQPLRVFLRSQKVTKPMMWC 180
           SLLW+NL  +M+FMGQ+ +ITA AA Y LYALPDLL NTLLQPLRV+LRSQ+VTKPMMWC
Sbjct: 121 SLLWINLGPIMLFMGQNPEITATAAEYCLYALPDLLNNTLLQPLRVYLRSQRVTKPMMWC 180

Query: 181 TLVAVMFHVPLNYCLVMKLKLGVPGVAMASVVCNLNMLKIGFSGLWF 227
           TL AV FHVPLNY LVM  + GVPGVA+ASVV NL M+ +    +WF
Sbjct: 181 TLAAVAFHVPLNYWLVMVKRWGVPGVAIASVVTNLIMVVLLVGYVWF 227

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|15217599|ref|NP_177332.1| protein novel ion carrier-2 [Arabidopsis thaliana] gi|7239514|gb|AAF43240.1|AC012654_24 Contains similarity to the ZF14 mRNA from Arabidopsis thaliana gb|AB028198; It is a member of the uncharacterized membrane protein family PF|01554 [Arabidopsis thaliana] gi|12324538|gb|AAG52224.1|AC021665_7 hypothetical protein; 7233-4794 [Arabidopsis thaliana] gi|29468190|gb|AAO85439.1| NIC2 [Arabidopsis thaliana] gi|332197125|gb|AEE35246.1| protein novel ion carrier-2 [Arabidopsis thaliana]

 Score =  342 bits (876), Expect = 2e-91,   Method: Compositional matrix adjust.
 Identities = 168/226 (74%), Positives = 191/226 (84%)

Query: 1   MPDRIEDFDFYSHKLPSFSQVVEELKELWGMALPMTGMNILVFIRAVVSVLFLGRLGSLE 60
           M D+I+  DF SHK P+  QV+EELKELW M LP+T MN LV++RAVVSVLFLGRLGSLE
Sbjct: 1   MEDKIQSDDFTSHKNPTLPQVIEELKELWAMVLPITAMNCLVYVRAVVSVLFLGRLGSLE 60

Query: 61  LAGGALSIGFTNITGYSVLVGLASGLEPVCSQAYGSKNWDLLSLSLQRMILILFFAIIPI 120
           LAGGALSIGFTNITGYSV+VGLASGLEPVCSQAYGSKNWDLL+LSL RM++IL  A +PI
Sbjct: 61  LAGGALSIGFTNITGYSVMVGLASGLEPVCSQAYGSKNWDLLTLSLHRMVVILLMASLPI 120

Query: 121 SLLWLNLETVMIFMGQDKDITAMAATYTLYALPDLLTNTLLQPLRVFLRSQKVTKPMMWC 180
           SLLW+NL  +M+FMGQ+ +ITA AA Y LYALPDLLTNTLLQPLRV+LRSQ+VTKPMMWC
Sbjct: 121 SLLWINLGPIMLFMGQNPEITATAAEYCLYALPDLLTNTLLQPLRVYLRSQRVTKPMMWC 180

Query: 181 TLVAVMFHVPLNYCLVMKLKLGVPGVAMASVVCNLNMLKIGFSGLW 226
           TL AV FHVPLNY LVM    GVPGVA+ASVV NL M+ +    +W
Sbjct: 181 TLAAVAFHVPLNYWLVMVKHWGVPGVAIASVVTNLIMVVLLVGYVW 226

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356561367|ref|XP_003548954.1| PREDICTED: MATE efflux family protein 9-like [Glycine max]

 Score =  330 bits (847), Expect = 3e-88,   Method: Compositional matrix adjust.
 Identities = 163/196 (83%), Positives = 182/196 (92%)

Query: 23  EELKELWGMALPMTGMNILVFIRAVVSVLFLGRLGSLELAGGALSIGFTNITGYSVLVGL 82
           EE+KELWGMALP+T MN+LVF+RAVVSVLFLGRLGSLELAGGALSIGFTNITGYSVLVGL
Sbjct: 2   EEMKELWGMALPITAMNMLVFVRAVVSVLFLGRLGSLELAGGALSIGFTNITGYSVLVGL 61

Query: 83  ASGLEPVCSQAYGSKNWDLLSLSLQRMILILFFAIIPISLLWLNLETVMIFMGQDKDITA 142
           A+GLEPVCSQA+GSKNWDLLSLSLQRM+LIL  AI+PISLLWLNLE +M+FMGQD  IT 
Sbjct: 62  AAGLEPVCSQAFGSKNWDLLSLSLQRMVLILLMAIVPISLLWLNLERIMLFMGQDSAITG 121

Query: 143 MAATYTLYALPDLLTNTLLQPLRVFLRSQKVTKPMMWCTLVAVMFHVPLNYCLVMKLKLG 202
           MA+ Y  Y+LPDLLTNTLLQPLRVFLRSQKVTKPMM+C+LVAV+FHVPLNY LV+ + LG
Sbjct: 122 MASLYCFYSLPDLLTNTLLQPLRVFLRSQKVTKPMMYCSLVAVLFHVPLNYLLVVVMGLG 181

Query: 203 VPGVAMASVVCNLNML 218
           VPGVAMASV+ NLNM+
Sbjct: 182 VPGVAMASVMTNLNMV 197

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224135467|ref|XP_002327225.1| predicted protein [Populus trichocarpa] gi|222835595|gb|EEE74030.1| predicted protein [Populus trichocarpa]

 Score =  329 bits (843), Expect = 1e-87,   Method: Compositional matrix adjust.
 Identities = 164/208 (78%), Positives = 188/208 (90%)

Query: 20  QVVEELKELWGMALPMTGMNILVFIRAVVSVLFLGRLGSLELAGGALSIGFTNITGYSVL 79
           QVVEELKELWGMALP+T  +++ F RAVVSV+FLGRLGSLELAGGALSIGFTNITGYSVL
Sbjct: 1   QVVEELKELWGMALPITAAHLMAFFRAVVSVMFLGRLGSLELAGGALSIGFTNITGYSVL 60

Query: 80  VGLASGLEPVCSQAYGSKNWDLLSLSLQRMILILFFAIIPISLLWLNLETVMIFMGQDKD 139
           VGLASGLEPVCSQAYGSKNWDLLSLSLQRMILIL  AIIPISLLWLNLE++M FMGQD +
Sbjct: 61  VGLASGLEPVCSQAYGSKNWDLLSLSLQRMILILGIAIIPISLLWLNLESIMNFMGQDPN 120

Query: 140 ITAMAATYTLYALPDLLTNTLLQPLRVFLRSQKVTKPMMWCTLVAVMFHVPLNYCLVMKL 199
           ITAMAATY +Y+LPDLLTNTLLQPLRVFLRSQ VTKP+M+C+L+AV+FHVPLNY LV+ +
Sbjct: 121 ITAMAATYCIYSLPDLLTNTLLQPLRVFLRSQGVTKPLMYCSLLAVIFHVPLNYVLVVVM 180

Query: 200 KLGVPGVAMASVVCNLNMLKIGFSGLWF 227
             GVPGVA+AS V N+NM+ +  + +W+
Sbjct: 181 GWGVPGVALASAVTNMNMVVLMVAYVWW 208

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224146436|ref|XP_002326006.1| predicted protein [Populus trichocarpa] gi|222862881|gb|EEF00388.1| predicted protein [Populus trichocarpa]

 Score =  328 bits (841), Expect = 2e-87,   Method: Compositional matrix adjust.
 Identities = 163/208 (78%), Positives = 188/208 (90%)

Query: 20  QVVEELKELWGMALPMTGMNILVFIRAVVSVLFLGRLGSLELAGGALSIGFTNITGYSVL 79
           QV EELKELWGMALP+T  +++ F RAVVSV+FLGRLGSLELAGGALSIGFTNITGYSVL
Sbjct: 1   QVFEELKELWGMALPITAAHLMAFFRAVVSVMFLGRLGSLELAGGALSIGFTNITGYSVL 60

Query: 80  VGLASGLEPVCSQAYGSKNWDLLSLSLQRMILILFFAIIPISLLWLNLETVMIFMGQDKD 139
           VGLASGLEPVCSQAYGSKNWDLLSLSLQRMI+IL  AIIPISLLWLNLE++M FMGQD +
Sbjct: 61  VGLASGLEPVCSQAYGSKNWDLLSLSLQRMIVILGIAIIPISLLWLNLESIMNFMGQDPN 120

Query: 140 ITAMAATYTLYALPDLLTNTLLQPLRVFLRSQKVTKPMMWCTLVAVMFHVPLNYCLVMKL 199
           ITAMAATY +Y+LPDLLTNTLLQPLRVFLRSQ+VTKP+M+C+L+AV+FHVPLNY LV+ +
Sbjct: 121 ITAMAATYCMYSLPDLLTNTLLQPLRVFLRSQRVTKPIMYCSLLAVIFHVPLNYALVVVM 180

Query: 200 KLGVPGVAMASVVCNLNMLKIGFSGLWF 227
             GVPGVA+ASVV N+NM+ +    +W+
Sbjct: 181 GWGVPGVALASVVTNMNMVMLMVGYVWW 208

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225460462|ref|XP_002267095.1| PREDICTED: MATE efflux family protein 9-like [Vitis vinifera]

 Score =  325 bits (832), Expect = 2e-86,   Method: Compositional matrix adjust.
 Identities = 166/218 (76%), Positives = 185/218 (84%), Gaps = 2/218 (0%)

Query: 1   MPDRIEDFDFYSHKLPSFSQVVEELKELWGMALPMTGMNILVFIRAVVSVLFLGRLGSLE 60
           M D+  D  F   KLPS +QVVEEL ELW MALP+T MN LV++RA VSVLFLGRLG LE
Sbjct: 1   MADKDPDCCF--QKLPSVTQVVEELNELWSMALPITAMNCLVYVRAAVSVLFLGRLGRLE 58

Query: 61  LAGGALSIGFTNITGYSVLVGLASGLEPVCSQAYGSKNWDLLSLSLQRMILILFFAIIPI 120
           LAGGALSIGFTNITGYSVLVGLASGLEPVCSQAYGSKNW+LLSLSL RM+LIL  AIIPI
Sbjct: 59  LAGGALSIGFTNITGYSVLVGLASGLEPVCSQAYGSKNWELLSLSLVRMVLILGVAIIPI 118

Query: 121 SLLWLNLETVMIFMGQDKDITAMAATYTLYALPDLLTNTLLQPLRVFLRSQKVTKPMMWC 180
           S LW+NL+ VM+ MGQDK+ITAMAA Y LY+LPDL TNTLLQPLRV+LRSQ+VTKPMM+C
Sbjct: 119 SFLWVNLDRVMVAMGQDKEITAMAARYCLYSLPDLATNTLLQPLRVYLRSQRVTKPMMYC 178

Query: 181 TLVAVMFHVPLNYCLVMKLKLGVPGVAMASVVCNLNML 218
           +LVAV  HVPLN  +V  + LGV GVAMASVV NLNM+
Sbjct: 179 SLVAVALHVPLNAVMVEVMGLGVEGVAMASVVTNLNMV 216

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449443875|ref|XP_004139701.1| PREDICTED: multidrug and toxin extrusion protein 2-like [Cucumis sativus]

 Score =  320 bits (819), Expect = 6e-85,   Method: Compositional matrix adjust.
 Identities = 157/220 (71%), Positives = 187/220 (85%), Gaps = 2/220 (0%)

Query: 9   DFYSHKLPSFSQVVEELKELWGMALPMTGMNILVFIRAVVSVLFLGRLGSLELAGGALSI 68
           D  S+K PS SQVVEELKELWG+  P+T MN LVF R VVSVLFLGR+GSLELAGGAL+I
Sbjct: 7   DASSNKAPSVSQVVEELKELWGITFPVTAMNFLVFFRQVVSVLFLGRIGSLELAGGALAI 66

Query: 69  GFTNITGYSVLVGLASGLEPVCSQAYGSKNWDLLSLSLQRMILILFFAIIPISLLWLNLE 128
           GFTNITGYSV+VGLA+GLEP+CSQAYGSKNWDLL LSLQRMILIL FA +PI  LWLNL+
Sbjct: 67  GFTNITGYSVMVGLAAGLEPICSQAYGSKNWDLLCLSLQRMILILLFATVPIGFLWLNLD 126

Query: 129 TVMIFMGQDKDITAMAATYTLYALPDLLTNTLLQPLRVFLRSQKVTKPMMWCTLVAVMFH 188
            +M+F+GQD  IT+MAA Y +Y++PDLLTNTLLQPL++FLRSQK TKPMM+CTLVAV  H
Sbjct: 127 NIMVFLGQDHLITSMAAIYCIYSMPDLLTNTLLQPLKIFLRSQKDTKPMMYCTLVAVGLH 186

Query: 189 VPLNYCLVMKLKLGVPGVAMASVVCNLNMLKI--GFSGLW 226
           VPLNY +V+ L +G+ GVAMASV+ NLN++ +  G+  +W
Sbjct: 187 VPLNYMMVVVLGMGMRGVAMASVLTNLNIVGLMSGYVWVW 226

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449517445|ref|XP_004165756.1| PREDICTED: MATE efflux family protein 5-like, partial [Cucumis sativus]

 Score =  319 bits (818), Expect = 1e-84,   Method: Compositional matrix adjust.
 Identities = 157/220 (71%), Positives = 187/220 (85%), Gaps = 2/220 (0%)

Query: 9   DFYSHKLPSFSQVVEELKELWGMALPMTGMNILVFIRAVVSVLFLGRLGSLELAGGALSI 68
           D  S+K PS SQVVEELKELWG+  P+T MN LVF R VVSVLFLGR+GSLELAGGAL+I
Sbjct: 7   DASSNKAPSVSQVVEELKELWGITFPVTAMNFLVFFRQVVSVLFLGRIGSLELAGGALAI 66

Query: 69  GFTNITGYSVLVGLASGLEPVCSQAYGSKNWDLLSLSLQRMILILFFAIIPISLLWLNLE 128
           GFTNITGYSV+VGLA+GLEP+CSQAYGSKNWDLL LSLQRMILIL FA +PI  LWLNL+
Sbjct: 67  GFTNITGYSVMVGLAAGLEPICSQAYGSKNWDLLCLSLQRMILILLFATVPIGFLWLNLD 126

Query: 129 TVMIFMGQDKDITAMAATYTLYALPDLLTNTLLQPLRVFLRSQKVTKPMMWCTLVAVMFH 188
            +M+F+GQD  IT+MAA Y +Y++PDLLTNTLLQPL++FLRSQK TKPMM+CTLVAV  H
Sbjct: 127 NIMVFLGQDHLITSMAAIYCIYSMPDLLTNTLLQPLKIFLRSQKDTKPMMYCTLVAVGLH 186

Query: 189 VPLNYCLVMKLKLGVPGVAMASVVCNLNMLKI--GFSGLW 226
           VPLNY +V+ L +G+ GVAMASV+ NLN++ +  G+  +W
Sbjct: 187 VPLNYMMVVVLGMGMRGVAMASVLTNLNIVGLMSGYVWVW 226

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255586819|ref|XP_002534023.1| multidrug resistance pump, putative [Ricinus communis] gi|223525974|gb|EEF28364.1| multidrug resistance pump, putative [Ricinus communis]

 Score =  307 bits (786), Expect = 4e-81,   Method: Compositional matrix adjust.
 Identities = 151/197 (76%), Positives = 178/197 (90%)

Query: 31  MALPMTGMNILVFIRAVVSVLFLGRLGSLELAGGALSIGFTNITGYSVLVGLASGLEPVC 90
           MALP+T  +++ F RAVVSV+FLGRLGSLELAGGALSIGFTNITGYSV+VGLASGLEPVC
Sbjct: 1   MALPITAAHLMAFFRAVVSVMFLGRLGSLELAGGALSIGFTNITGYSVIVGLASGLEPVC 60

Query: 91  SQAYGSKNWDLLSLSLQRMILILFFAIIPISLLWLNLETVMIFMGQDKDITAMAATYTLY 150
           SQAYG KNWDLLSLSLQRMILILF AIIPISLLW+NLE++M FMGQD +IT+MAATY +Y
Sbjct: 61  SQAYGCKNWDLLSLSLQRMILILFVAIIPISLLWINLESIMNFMGQDPNITSMAATYCIY 120

Query: 151 ALPDLLTNTLLQPLRVFLRSQKVTKPMMWCTLVAVMFHVPLNYCLVMKLKLGVPGVAMAS 210
           +LPDLLT TLLQPLRVFLRSQ+VT+P+M+C+L+AV+FHVPLNY LV+ + LGVPGVAMAS
Sbjct: 121 SLPDLLTYTLLQPLRVFLRSQRVTQPIMYCSLLAVIFHVPLNYVLVIVMGLGVPGVAMAS 180

Query: 211 VVCNLNMLKIGFSGLWF 227
           VV N+NM+ +    +W+
Sbjct: 181 VVTNMNMVALMVGYVWW 197

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	306
TAIR|locus:2013006	510	AT1G71870 "AT1G71870" [Arabido	0.767	0.460	0.610	7e-92
TAIR|locus:2016615	532	ZF14 "AT1G58340" [Arabidopsis	0.692	0.398	0.415	2.6e-55
TAIR|locus:2155179	502	AT5G49130 "AT5G49130" [Arabido	0.679	0.414	0.440	1.8e-54
TAIR|locus:2119941	532	ADS1 "AT4G29140" [Arabidopsis	0.709	0.407	0.377	1.8e-50
TAIR|locus:2183169	508	AT5G19700 "AT5G19700" [Arabido	0.699	0.421	0.381	9.8e-50
TAIR|locus:2127193	502	AT4G23030 "AT4G23030" [Arabido	0.660	0.402	0.385	1.6e-49
TAIR|locus:2064138	486	AT2G38510 "AT2G38510" [Arabido	0.647	0.407	0.363	9.8e-48
TAIR|locus:2173098	505	AT5G52050 [Arabidopsis thalian	0.683	0.413	0.320	5.2e-43
TAIR|locus:2132619	491	AT4G22790 "AT4G22790" [Arabido	0.611	0.380	0.354	4.6e-35
TAIR|locus:2156737	486	AT5G52450 "AT5G52450" [Arabido	0.630	0.397	0.338	2.3e-33

TAIR|locus:2013006 AT1G71870 "AT1G71870" [Arabidopsis thaliana (taxid:3702)]

 Score = 723 (259.6 bits), Expect = 7.0e-92, Sum P(2) = 7.0e-92
 Identities = 144/236 (61%), Positives = 170/236 (72%)

Query:     1 MPDRIEDFDFYSHKLPSFSQVVEELKELWGMALPMTGMNILVFIRAVVSVLFXXXXXXXX 60
             M D+I+  DF SHK P+  QV+EELKELW M LP+T MN LV++RAVVSVLF        
Sbjct:     1 MEDKIQSDDFTSHKNPTLPQVIEELKELWAMVLPITAMNCLVYVRAVVSVLFLGRLGSLE 60

Query:    61 XXXXXXXXXFTNITGYSVLVGLASGLEPVCSQAYGSKNWDLLSLSLQRMILILFFAIIPI 120
                      FTNITGYSV+VGLASGLEPVCSQAYGSKNWDLL+LSL RM++IL  A +PI
Sbjct:    61 LAGGALSIGFTNITGYSVMVGLASGLEPVCSQAYGSKNWDLLTLSLHRMVVILLMASLPI 120

Query:   121 SLLWLNLETVMIFMGQDKDIXXXXXXXXXXXXPDLLTNTLLQPLRVFLRSQKVTKPMMWC 180
             SLLW+NL  +M+FMGQ+ +I            PDLLTNTLLQPLRV+LRSQ+VTKPMMWC
Sbjct:   121 SLLWINLGPIMLFMGQNPEITATAAEYCLYALPDLLTNTLLQPLRVYLRSQRVTKPMMWC 180

Query:   181 TLVAVMFHVPLNYCLVMKLKLGVPGVAMASVVCNLNMLKIGFSGLWF-GLLSAQAA 235
             TL AV FHVPLNY LVM    GVPGVA+ASVV NL M+ +    +W  G+L  + +
Sbjct:   181 TLAAVAFHVPLNYWLVMVKHWGVPGVAIASVVTNLIMVVLLVGYVWVSGMLQKRVS 236

GO:0005215 "transporter activity" evidence=ISS

GO:0005886 "plasma membrane" evidence=ISM

GO:0006855 "drug transmembrane transport" evidence=IEA

GO:0015238 "drug transmembrane transporter activity" evidence=IEA

GO:0015297 "antiporter activity" evidence=IEA;ISS

GO:0016020 "membrane" evidence=IEA;ISS

GO:0055085 "transmembrane transport" evidence=IEA

GO:0009062 "fatty acid catabolic process" evidence=RCA

TAIR|locus:2016615 ZF14 "AT1G58340" [Arabidopsis thaliana (taxid:3702)]

 Score = 454 (164.9 bits), Expect = 2.6e-55, Sum P(2) = 2.6e-55
 Identities = 88/212 (41%), Positives = 135/212 (63%)

Query:    16 PSFSQVVEELKELWGMALPMTGMNILVFIRAVVSVLFXXXXXXXXXXXXXXXXXFTNITG 75
             PSF + +EE+K +  ++ P     +L++ RA++S+LF                 F NITG
Sbjct:    50 PSFLEGLEEVKAIGKISGPTAMTGLLMYSRAMISMLFLGYLGELELAGGSLSIGFANITG 109

Query:    76 YSVLVGLASGLEPVCSQAYGSKNWDLLSLSLQRMILILFFAIIPISLLWLNLETVMIFMG 135
             YSV+ GL+ G+EP+C QAYG+K   LL L+LQR +L+L    +PIS  WLN+  ++++ G
Sbjct:   110 YSVISGLSMGMEPICGQAYGAKQMKLLGLTLQRTVLLLLSCSVPISFSWLNMRRILLWCG 169

Query:   136 QDKDIXXXXXXXXXXXXPDLLTNTLLQPLRVFLRSQKVTKPMMWCTLVAVMFHVPLNYCL 195
             QD++I            PDL   +LL PLR++LR+Q +T P+ + T V+V+ HVPLNY L
Sbjct:   170 QDEEISSVAQQFLLFAIPDLFLLSLLHPLRIYLRTQNITLPVTYSTAVSVLLHVPLNYLL 229

Query:   196 VMKLKLGVPGVAMASVVCNLNMLKIGFSGLWF 227
             V+KL++GV GVA+A V+ NLN++ +  S ++F
Sbjct:   230 VVKLEMGVAGVAIAMVLTNLNLVVLLSSFVYF 261

GO:0005215 "transporter activity" evidence=ISS

GO:0005886 "plasma membrane" evidence=ISM

GO:0006855 "drug transmembrane transport" evidence=IEA

GO:0015238 "drug transmembrane transporter activity" evidence=IEA

GO:0015297 "antiporter activity" evidence=IEA

GO:0016020 "membrane" evidence=IEA;ISS

GO:0055085 "transmembrane transport" evidence=IEA

GO:0009624 "response to nematode" evidence=IEP

GO:0003156 "regulation of organ formation" evidence=IMP

GO:0043226 "organelle" evidence=IDA

GO:0006810 "transport" evidence=IGI

GO:0017119 "Golgi transport complex" evidence=IDA

GO:0022857 "transmembrane transporter activity" evidence=IGI

GO:0055072 "iron ion homeostasis" evidence=IMP

TAIR|locus:2155179 AT5G49130 "AT5G49130" [Arabidopsis thaliana (taxid:3702)]

 Score = 465 (168.7 bits), Expect = 1.8e-54, Sum P(2) = 1.8e-54
 Identities = 92/209 (44%), Positives = 128/209 (61%)

Query:    13 HKL-PSFSQVVEELKELWGMALPMTGMNILVFIRAVVSVLFXXXXXXXXXXXXXXXXXFT 71
             HK  P+  +VVEELK +W ++ P+  M+IL +++ + SV+                  FT
Sbjct:    14 HKYNPTMPEVVEELKRIWDISFPVAAMSILNYLKNMTSVVCMGRLGSLELAGGALAIGFT 73

Query:    72 NITGYSVLVGLASGLEPVCSQAYGSKNWDLLSLSLQRMILILFFAIIPISLLWLNLETVM 131
             NITGYSVL GLA+G+EP+C QA GSKN  L SL+L+R I +L  A +PISLLWLNL  +M
Sbjct:    74 NITGYSVLSGLATGMEPLCGQAIGSKNPSLASLTLKRTIFLLLLASLPISLLWLNLAPLM 133

Query:   132 IFMGQDKDIXXXXXXXXXXXXPDLLTNTLLQPLRVFLRSQKVTKPMMWCTLVAVMFHVPL 191
             + + Q  DI            PDLL N+ L PLR++LR +  T P+MWCTLV+V+ H+P+
Sbjct:   134 LMLRQQHDITRVASLYCSFSLPDLLANSFLHPLRIYLRCKGTTWPLMWCTLVSVLLHLPI 193

Query:   192 NYCLVMKLKLGVPGVAMASVVCNLNMLKI 220
                    + LGVPGVA++S + N   L +
Sbjct:   194 TAFFTFYISLGVPGVAVSSFLTNFISLSL 222

GO:0005215 "transporter activity" evidence=ISS

GO:0005886 "plasma membrane" evidence=ISM

GO:0006855 "drug transmembrane transport" evidence=IEA

GO:0015238 "drug transmembrane transporter activity" evidence=IEA

GO:0015297 "antiporter activity" evidence=IEA;ISS

GO:0016020 "membrane" evidence=IEA;ISS

GO:0055085 "transmembrane transport" evidence=IEA

TAIR|locus:2119941 ADS1 "AT4G29140" [Arabidopsis thaliana (taxid:3702)]

 Score = 412 (150.1 bits), Expect = 1.8e-50, Sum P(2) = 1.8e-50
 Identities = 82/217 (37%), Positives = 126/217 (58%)

Query:    16 PSFSQVVEELKELWGMALPMTGMNILVFIRAVVSVLFXXXXXXXXXXXXXXXXXFTNITG 75
             P  ++ V E K L+ +A P+    +++++R+ VS+ F                 F NITG
Sbjct:    48 PLMAEAVTEAKSLFTLAFPIAVTALVLYLRSAVSMFFLGQLGDLELAAGSLAIAFANITG 107

Query:    76 YSVLVGLASGLEPVCSQAYGSKNWDLLSLSLQRMILILFFAIIPISLLWLNLETVMIFMG 135
             YSVL GLA G+EP+CSQA+G+  + LLSL+L R ++ L    +PIS+LW N+  + +++ 
Sbjct:   108 YSVLSGLALGMEPLCSQAFGAHRFKLLSLTLHRTVVFLLVCCVPISVLWFNVGKISVYLH 167

Query:   136 QDKDIXXXXXXXXXXXXPDLLTNTLLQPLRVFLRSQKVTKPMMWCTLVAVMFHVPLNYCL 195
             QD DI            PDLLTNTLL P+R++LR+Q +  P+   +L   +FH+P N  L
Sbjct:   168 QDPDIAKLAQTYLIFSLPDLLTNTLLHPIRIYLRAQGIIHPVTLASLSGAVFHLPANLFL 227

Query:   196 VMKLKLGVPGVAMASVVCNLNMLKIGFSGLWFGLLSA 232
             V  L+LG+ GVA+AS + N+ ++      +W   L A
Sbjct:   228 VSYLRLGLTGVAVASSITNIFVVAFLVCYVWASGLHA 264

GO:0005215 "transporter activity" evidence=ISS

GO:0005886 "plasma membrane" evidence=ISM

GO:0006855 "drug transmembrane transport" evidence=IEA

GO:0015238 "drug transmembrane transporter activity" evidence=IEA

GO:0015297 "antiporter activity" evidence=IEA

GO:0016020 "membrane" evidence=IEA;ISS

GO:0055085 "transmembrane transport" evidence=IEA

GO:0031348 "negative regulation of defense response" evidence=IMP

GO:0046685 "response to arsenic-containing substance" evidence=RCA

TAIR|locus:2183169 AT5G19700 "AT5G19700" [Arabidopsis thaliana (taxid:3702)]

 Score = 401 (146.2 bits), Expect = 9.8e-50, Sum P(2) = 9.8e-50
 Identities = 82/215 (38%), Positives = 124/215 (57%)

Query:    16 PSFSQVVEELKELWGMALPMTGMNILVFIRAVVSVLFXXXXXXXXXXXXXXXXXFTNITG 75
             P+ +++  E + L+ +A P     ++++ R+ +S+LF                 F NITG
Sbjct:    28 PTITELKSEARSLFSLAFPTILAALILYARSAISMLFLGHIGELELAGGSLAIAFANITG 87

Query:    76 YSVLVGLASGLEPVCSQAYGSKNWDLLSLSLQRMILILFFAIIPISLLWLNLETVMIFMG 135
             YSVL GLA G++P+CSQA+G+    LLSL+LQR +L L  + + I  LWLNL  +MI++ 
Sbjct:    88 YSVLAGLALGMDPLCSQAFGAGRPKLLSLTLQRTVLFLLTSSVVIVALWLNLGKIMIYLH 147

Query:   136 QDKDIXXXXXXXXXXXXPDLLTNTLLQPLRVFLRSQKVTKPMMWCTLVAVMFHVPLNYCL 195
             QD  I            PDLLTN+ L PLR++LR+Q +T P+   TL   +FH+P+N+ L
Sbjct:   148 QDPSISSLAQTYILCSIPDLLTNSFLHPLRIYLRAQGITSPLTLATLAGTIFHIPMNFFL 207

Query:   196 VMKLKLGVPGVAMASVVCNLNMLKIGFSGLWF-GL 229
             V  L  G  GV+MA+   NL ++    + +W  GL
Sbjct:   208 VSYLGWGFMGVSMAAAASNLLVVIFLVAHVWIAGL 242

GO:0005215 "transporter activity" evidence=ISS

GO:0005886 "plasma membrane" evidence=ISM

GO:0006855 "drug transmembrane transport" evidence=IEA

GO:0015238 "drug transmembrane transporter activity" evidence=IEA

GO:0015297 "antiporter activity" evidence=IEA

GO:0016020 "membrane" evidence=IEA;ISS

GO:0055085 "transmembrane transport" evidence=IEA

TAIR|locus:2127193 AT4G23030 "AT4G23030" [Arabidopsis thaliana (taxid:3702)]

 Score = 417 (151.9 bits), Expect = 1.6e-49, Sum P(2) = 1.6e-49
 Identities = 79/205 (38%), Positives = 127/205 (61%)

Query:    19 SQVVEELKELWGMALPMTGMNILVFIRAVVSVLFXXXXXXXXXXXXXXXXX-FTNITGYS 77
             S  ++E K +  ++LP+    +L++ R+++S+LF                  F NITGYS
Sbjct:    27 SSSIQEAKSIAKISLPLILTGLLLYSRSMISMLFLGRLNDLSALSGGSLALGFANITGYS 86

Query:    78 VLVGLASGLEPVCSQAYGSKNWDLLSLSLQRMILILFFAIIPISLLWLNLETVMIFMGQD 137
             +L GL+ G+EP+C QA+G+K + LL L+LQR  L+L    +PIS+LWLN++ +++F GQD
Sbjct:    87 LLSGLSIGMEPICVQAFGAKRFKLLGLALQRTTLLLLLCSLPISILWLNIKKILLFFGQD 146

Query:   138 KDIXXXXXXXXXXXXPDLLTNTLLQPLRVFLRSQKVTKPMMWCTLVAVMFHVPLNYCLVM 197
             ++I            PDL+  + L P+R++LRSQ +T P+ +    AV+ H+P+NY LV 
Sbjct:   147 EEISNQAEIFILFSLPDLILQSFLHPIRIYLRSQSITLPLTYSAFFAVLLHIPINYLLVS 206

Query:   198 KLKLGVPGVAMASVVCNLNMLKIGF 222
              L LG+ GVA+ ++  N+N+L  GF
Sbjct:   207 SLGLGLKGVALGAIWTNVNLL--GF 229

GO:0005215 "transporter activity" evidence=ISS

GO:0005886 "plasma membrane" evidence=ISM

GO:0006855 "drug transmembrane transport" evidence=IEA

GO:0015238 "drug transmembrane transporter activity" evidence=IEA

GO:0015297 "antiporter activity" evidence=IEA

GO:0016020 "membrane" evidence=IEA;ISS

GO:0055085 "transmembrane transport" evidence=IEA

TAIR|locus:2064138 AT2G38510 "AT2G38510" [Arabidopsis thaliana (taxid:3702)]

 Score = 379 (138.5 bits), Expect = 9.8e-48, Sum P(2) = 9.8e-48
 Identities = 72/198 (36%), Positives = 115/198 (58%)

Query:    20 QVVEELKELWGMALPMTGMNILVFIRAVVSVLFXXXXXXXXXXXXXXXXXFTNITGYSVL 79
             QV EE+  L  +A P+   ++L+F R+++S+ F                 F NITG SVL
Sbjct:     2 QVGEEMASLTKIACPIVMTSLLIFSRSIISMWFLSHLGKVELAGGALAMGFGNITGVSVL 61

Query:    80 VGLASGLEPVCSQAYGSKNWDLLSLSLQRMILILFFAIIPISLLWLNLETVMIFMGQDKD 139
              GL+ G++P+C QA+G+K W +LS + Q+M  +L    +PI++ WLN+E + + +GQD D
Sbjct:    62 KGLSVGMDPICGQAFGAKRWTVLSHTFQKMFCLLIVVSVPIAVTWLNIEPIFLRLGQDPD 121

Query:   140 IXXXXXXXXXXXXPDLLTNTLLQPLRVFLRSQKVTKPMMWCTLVAVMFHVPLNYCLVMKL 199
             I            P+LL   +L PLR FLR+Q +T P+    +V+++ H   NY  V+++
Sbjct:   122 ITKVAKTYMLFFVPELLAQAMLHPLRTFLRTQGLTSPLTISAIVSILLHPLFNYVFVVRM 181

Query:   200 KLGVPGVAMASVVCNLNM 217
             +LGV GVA+A     +N+
Sbjct:   182 RLGVKGVAIAMAFNTMNI 199

GO:0005215 "transporter activity" evidence=ISS

GO:0005886 "plasma membrane" evidence=ISM

GO:0006855 "drug transmembrane transport" evidence=IEA

GO:0015238 "drug transmembrane transporter activity" evidence=IEA

GO:0015297 "antiporter activity" evidence=IEA

GO:0016020 "membrane" evidence=IEA;ISS

GO:0055085 "transmembrane transport" evidence=IEA

TAIR|locus:2173098 AT5G52050 [Arabidopsis thaliana (taxid:3702)]

 Score = 362 (132.5 bits), Expect = 5.2e-43, Sum P(2) = 5.2e-43
 Identities = 67/209 (32%), Positives = 118/209 (56%)

Query:    19 SQVVEELKELWGMALPMTGMNILVFIRAVVSVLFXXXXXXXXXXXXXXXXXFTNITGYSV 78
             S  + E   +  ++ P+    + +++R+ VS+ F                 F NITGYS+
Sbjct:    30 SVFLNEAISICKISYPLVLTGLFLYVRSFVSLSFLGGLGDATLAGGSLAAAFANITGYSL 89

Query:    79 LVGLASGLEPVCSQAYGSKNWDLLSLSLQRMILILFFAIIPISLLWLNLETVMIFMGQDK 138
               GL  G+E +CSQA+G++ ++ +  S++R I++L    +P++LLW+N+E +++ + QDK
Sbjct:    90 FSGLTMGVESICSQAFGARRYNYVCASVKRGIILLLVTSLPVTLLWMNMEKILLILKQDK 149

Query:   139 DIXXXXXXXXXXXXPDLLTNTLLQPLRVFLRSQKVTKPMMWCTLVAVMFHVPLNYCLVMK 198
              +            PDL+  + L PLRV+LR+Q  T P+  CT++A   H+P+ + LV  
Sbjct:   150 KLASEAHIFLLYSVPDLVAQSFLHPLRVYLRTQSKTLPLSICTVIASFLHLPITFFLVSY 209

Query:   199 LKLGVPGVAMASVVCNLNMLKIGFSGLWF 227
             L LG+ G+A++ VV N N++   F  + F
Sbjct:   210 LGLGIKGIALSGVVSNFNLVAFLFLYICF 238

GO:0005886 "plasma membrane" evidence=ISM

GO:0006855 "drug transmembrane transport" evidence=IEA

GO:0015238 "drug transmembrane transporter activity" evidence=IEA

GO:0015297 "antiporter activity" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0055085 "transmembrane transport" evidence=IEA

GO:0009693 "ethylene biosynthetic process" evidence=RCA

GO:0052542 "defense response by callose deposition" evidence=RCA

TAIR|locus:2132619 AT4G22790 "AT4G22790" [Arabidopsis thaliana (taxid:3702)]

 Score = 318 (117.0 bits), Expect = 4.6e-35, Sum P(2) = 4.6e-35
 Identities = 67/189 (35%), Positives = 103/189 (54%)

Query:    21 VVEELKELWGMALPMTGMNILVFIRAVVSVLFXXXXXXXXXXXXXXXXXFTNITGYSVLV 80
             +V ELK    + LP+  MN+L F +   + +F                 F N+TG+SVL 
Sbjct:    27 IVHELKLQMRIGLPLVVMNLLWFGKMTTTSVFLGRQGELNLAGGSLGFSFANVTGFSVLY 86

Query:    81 GLASGLEPVCSQAYGSKNWDLLSLSLQRMILILFFAIIPISLLWLNLETVMIFMGQDKDI 140
             G+++ +EP+C QA+G+KN+ LL  +L   +L+L    +PIS LWLN+  ++   GQ +DI
Sbjct:    87 GISAAMEPICGQAFGAKNFKLLHKTLFMAVLLLLLISVPISFLWLNVHKILTGFGQREDI 146

Query:   141 XXXXXXXXXXXXPDLLTNTLLQPLRVFLRSQKVTKPMMWCTLVAVMFHVPLNYCLVMKLK 200
                         P+L   + L PL+ +L SQ VT P+M+ T  A   H+P+N  +V+   
Sbjct:   147 SFIAKKYLLYLLPELPILSFLCPLKAYLSSQGVTLPIMFTTAAATSLHIPIN--IVLSKA 204

Query:   201 LGVPGVAMA 209
              G+ GVAMA
Sbjct:   205 RGIEGVAMA 213

GO:0005215 "transporter activity" evidence=ISS

GO:0005886 "plasma membrane" evidence=ISM

GO:0006855 "drug transmembrane transport" evidence=IEA

GO:0015238 "drug transmembrane transporter activity" evidence=IEA

GO:0015297 "antiporter activity" evidence=IEA;ISS

GO:0016020 "membrane" evidence=IEA;ISS

GO:0055085 "transmembrane transport" evidence=IEA

TAIR|locus:2156737 AT5G52450 "AT5G52450" [Arabidopsis thaliana (taxid:3702)]

 Score = 318 (117.0 bits), Expect = 2.3e-33, Sum P(2) = 2.3e-33
 Identities = 66/195 (33%), Positives = 107/195 (54%)

Query:    19 SQVVEELK-ELWGMALPMTGMNILVFIRAVVSVLFXXXXXXXXXXXXXXXXXFTNITGYS 77
             S V EE+K +LW ++ P+  +++L F   V+SV+F                 F ++TG+S
Sbjct:    21 SSVKEEVKKQLW-LSGPLIAVSLLQFCLQVISVMFVGHLGSLPLSAASIATSFASVTGFS 79

Query:    78 VLVGLASGLEPVCSQAYGSKNWDLLSLSLQRMILILFFAIIPISLLWLNLETVMIFMGQD 137
              L+G AS L+ +C QAYG+K + +L + +QR + +L  A IP+S++W N E +++F GQ+
Sbjct:    80 FLMGTASALDTLCGQAYGAKKYGMLGIQMQRAMFVLTLASIPLSIIWANTEHLLVFFGQN 139

Query:   138 KDIXXXXXXXXXXXXPDLLTNTLLQPLRVFLRSQKVTKPMMWCTLVAVMFHVPLNYCLVM 197
             K I            P +    LLQ    FL++Q    P+++C+ V    HV L + LV 
Sbjct:   140 KSIATLAGSYAKFMIPSIFAYGLLQCFNRFLQAQNNVFPVVFCSGVTTSLHVLLCWVLVF 199

Query:   198 KLKLGVPGVAMASVV 212
             K  LG  G A+A+ +
Sbjct:   200 KSGLGFQGAALANSI 214

GO:0005215 "transporter activity" evidence=ISS

GO:0005886 "plasma membrane" evidence=ISM

GO:0006855 "drug transmembrane transport" evidence=IEA

GO:0015238 "drug transmembrane transporter activity" evidence=IEA

GO:0015297 "antiporter activity" evidence=IEA

GO:0016020 "membrane" evidence=IEA;ISS

GO:0055085 "transmembrane transport" evidence=IEA

GO:0009624 "response to nematode" evidence=IEP

GO:0005774 "vacuolar membrane" evidence=IDA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	306
cd13132	436	cd13132, MATE_eukaryotic, Eukaryotic members of th	7e-66
pfam01554	161	pfam01554, MatE, MatE	1e-28
TIGR00797	342	TIGR00797, matE, putative efflux protein, MATE fam	9e-23
COG0534	455	COG0534, NorM, Na+-driven multidrug efflux pump [D	3e-22
cd13131	435	cd13131, MATE_NorM_like, Subfamily of the multidru	3e-20
cd13137	432	cd13137, MATE_NorM_like, Subfamily of the multidru	9e-17
cd13133	438	cd13133, MATE_like_7, Uncharacterized subfamily of	8e-16
COG0534	455	COG0534, NorM, Na+-driven multidrug efflux pump [D	3e-12
cd13134	438	cd13134, MATE_like_8, Uncharacterized subfamily of	1e-11
cd13136	424	cd13136, MATE_DinF_like, DinF and similar proteins	4e-11
cd13143	426	cd13143, MATE_MepA_like, Subfamily of the multidru	2e-10
PRK01766	456	PRK01766, PRK01766, multidrug efflux protein; Revi	4e-10
cd12082	420	cd12082, MATE_like, Multidrug and toxic compound e	2e-09
cd13135	429	cd13135, MATE_like_9, Uncharacterized subfamily of	7e-09
cd13138	431	cd13138, MATE_yoeA_like, Subfamily of the multidru	1e-07
cd13131	435	cd13131, MATE_NorM_like, Subfamily of the multidru	2e-07
cd13141	443	cd13141, MATE_like_13, Uncharacterized subfamily o	2e-07
cd12082	420	cd12082, MATE_like, Multidrug and toxic compound e	1e-06
cd13138	431	cd13138, MATE_yoeA_like, Subfamily of the multidru	1e-06
cd13140	435	cd13140, MATE_like_1, Uncharacterized subfamily of	3e-06
COG2244	480	COG2244, RfbX, Membrane protein involved in the ex	9e-06
cd13124	434	cd13124, MATE_SpoVB_like, Stage V sporulation prot	2e-04
cd13137	432	cd13137, MATE_NorM_like, Subfamily of the multidru	3e-04
cd13146	433	cd13146, MATE_like_6, Uncharacterized subfamily of	3e-04
PRK10367	441	PRK10367, PRK10367, DNA-damage-inducible SOS respo	3e-04
cd13132	436	cd13132, MATE_eukaryotic, Eukaryotic members of th	4e-04
cd13134	438	cd13134, MATE_like_8, Uncharacterized subfamily of	4e-04
cd13139	448	cd13139, MATE_like_14, Uncharacterized subfamily o	8e-04
PRK00187	464	PRK00187, PRK00187, multidrug efflux protein NorA;	0.001
cd13123	420	cd13123, MATE_MurJ_like, MurJ/MviN, a subfamily of	0.004

>gnl|CDD|240537 cd13132, MATE_eukaryotic, Eukaryotic members of the multidrug and toxic compound extrusion (MATE) family

 Score =  212 bits (542), Expect = 7e-66
 Identities = 79/195 (40%), Positives = 131/195 (67%)

Query: 24  ELKELWGMALPMTGMNILVFIRAVVSVLFLGRLGSLELAGGALSIGFTNITGYSVLVGLA 83
           E K+L  +A P+   ++L +  +VVSV+F+G LG LELA  +L+  F N+TG+S+L+GLA
Sbjct: 1   EAKKLLRLAAPLVLTSLLQYSLSVVSVVFVGHLGKLELAAASLASSFANVTGFSILLGLA 60

Query: 84  SGLEPVCSQAYGSKNWDLLSLSLQRMILILFFAIIPISLLWLNLETVMIFMGQDKDITAM 143
           S L+ +C QA+G+KN+ L+ + LQR ++IL    +PISLLWLN E +++ +GQD +I  +
Sbjct: 61  SALDTLCGQAFGAKNYKLVGVYLQRALVILLLCCVPISLLWLNTEPILLLLGQDPEIARL 120

Query: 144 AATYTLYALPDLLTNTLLQPLRVFLRSQKVTKPMMWCTLVAVMFHVPLNYCLVMKLKLGV 203
           A  Y  + +P L    L +PL+ +L++Q +  P+++ +LVA++ ++ LNY LV  L LG 
Sbjct: 121 AGEYLRWLIPGLFAYALFEPLKRYLQAQGIVLPLVYISLVALLLNILLNYLLVFVLGLGF 180

Query: 204 PGVAMASVVCNLNML 218
            G A+A+ +    ++
Sbjct: 181 IGAALATSISYWLIV 195

The integral membrane proteins from the MATE family are involved in exporting metabolites across the cell membrane and are responsible for multidrug resistance (MDR) in many bacteria and animals. MATE has also been identified as a large multigene family in plants, where the proteins are linked to disease resistance. A number of family members are involved in the synthesis of peptidoglycan components in bacteria. This subfamily, which is restricted to eukaryotes, contains vertebrate solute transporters responsible for secretion of cationic drugs across the brush border membranes, yeast proteins located in the vacuole membrane, and plant proteins involved in disease resistance and iron homeostatis under osmotic stress. Length = 436

>gnl|CDD|190033 pfam01554, MatE, MatE

 Score =  107 bits (269), Expect = 1e-28
 Identities = 42/161 (26%), Positives = 89/161 (55%), Gaps = 2/161 (1%)

Query: 34  PMTGMNILVFIRAVVSVLFLGRLGSLELAGGALSIGFTNITGYSVLVGLASGLEPVCSQA 93
           P+   N+L  + +++  LF+G LG++ LA  +++    ++  +  L+GL++ L  +  QA
Sbjct: 1   PIILENLLQSLYSLIDTLFVGHLGAVALAAVSIANSIASLI-FMFLLGLSTALTTLVGQA 59

Query: 94  YGSKNWDLLSLSLQRMILILFFAIIPISLL-WLNLETVMIFMGQDKDITAMAATYTLYAL 152
            G+ N+    ++L++ +++     +PI+LL  L  E ++    QD+++  +A+ Y     
Sbjct: 60  LGAGNFKRAGVALRQGLILSLLISLPIALLIILFREPILSLFTQDEEVLELASKYLRILA 119

Query: 153 PDLLTNTLLQPLRVFLRSQKVTKPMMWCTLVAVMFHVPLNY 193
             +   +L   L  FLR    TKP ++  L++++ ++PLNY
Sbjct: 120 LGIPFLSLQFVLSGFLRGAGDTKPPLYINLISLLLNIPLNY 160

The MatE domain. Length = 161

>gnl|CDD|233130 TIGR00797, matE, putative efflux protein, MATE family

 Score = 96.2 bits (240), Expect = 9e-23
 Identities = 53/192 (27%), Positives = 92/192 (47%), Gaps = 4/192 (2%)

Query: 34  PMTGMNILVFIRAVVSVLFLGRLGSLELAGGALSIGFTNITGYSVLVGLASGLEPVCSQA 93
           P    NIL  +  +V   F+G LG ++LA  +L      +  +S+L+GL +    + +QA
Sbjct: 1   PAILANILQPLLGLVDTAFVGHLGPVDLAAVSLG-SSVFMFLFSILMGLGTATTALVAQA 59

Query: 94  YGSKNWDLLSLSLQRMILILFFAIIPISLLWLNLET-VMIFMGQDKDITAMAATYTLYAL 152
            G+ N+  L    Q+ +L+     +P+ L+       ++  MG D ++  +A  Y    +
Sbjct: 60  VGAGNYQRLGRQAQQSLLLALLLGLPVLLVGYFFIDPLLSLMGADGEVAELAQDYLRILI 119

Query: 153 PDLLTNTLLQPLRVFLRSQKVTKPMMWCTLVAVMFHVPLNYCLVMKL--KLGVPGVAMAS 210
             +    L   LR FLR Q  TK  M+ TL+  + ++ LNY L+      LG+ G A+A+
Sbjct: 120 LGIPAYLLNFVLRGFLRGQGDTKTPMYITLIGNVINIILNYILIFGKFGFLGIVGAALAT 179

Query: 211 VVCNLNMLKIGF 222
           V+    M  +  
Sbjct: 180 VISYWLMFLLLL 191

The Multi Antimicrobial Extrusion (MATE) Family (TC 2.A.66) The MATE family consists of probable efflux proteins including a functionally characterized multi drug efflux system from Vibrio parahaemolyticus, a putative ethionine resistance protein of Saccharomyces cerevisiae, and the functionally uncharacterized DNA damage-inducible protein F (DinF) of E. coli. These proteins have 12 probable TMS [Transport and binding proteins, Other]. Length = 342

>gnl|CDD|223608 COG0534, NorM, Na+-driven multidrug efflux pump [Defense mechanisms]

 Score = 95.8 bits (239), Expect = 3e-22
 Identities = 52/208 (25%), Positives = 91/208 (43%), Gaps = 4/208 (1%)

Query: 24  ELKELWGMALPMTGMNILVFIRAVVSVLFLGRLGSLELAGGALSIGFTNITGYSVLVGLA 83
            LK L  +A+P+   N+L  +  +V    +G LG+  LA   L+     +   ++ +GL 
Sbjct: 15  ILKLLLKLAIPIILGNLLQTLYGLVDTFMVGHLGAEALAAVGLANPIFFLI-IAIFIGLG 73

Query: 84  SGLEPVCSQAYGSKNWDLLSLSLQRMILI-LFFAIIPISLLWLNLETVMIFMGQDKDITA 142
           +G   + +QA G+ +       L + +L+ L   ++   LL    E ++  +G   ++  
Sbjct: 74  TGTTVLVAQAIGAGDRKKAKRVLGQGLLLALLLGLLLAILLLFFAEPLLRLLGAPAEVLE 133

Query: 143 MAATYTLYALPDLLTNTLLQPLRVFLRSQKVTKPMMWCTLVAVMFHVPLNYCLVMKL--K 200
           +AA Y    L       L   L   LR    TK  M+  L+  + ++ LNY L+  L   
Sbjct: 134 LAAEYLRIILLGAPFALLSFVLSGILRGLGDTKTPMYILLLGNLLNIVLNYLLIFGLFGG 193

Query: 201 LGVPGVAMASVVCNLNMLKIGFSGLWFG 228
           LGV G A+A+V+       +    L   
Sbjct: 194 LGVAGAALATVIARWIGALLLLIYLLRK 221

Length = 455

>gnl|CDD|240536 cd13131, MATE_NorM_like, Subfamily of the multidrug and toxic compound extrusion (MATE)-like proteins similar to Vibrio cholerae NorM

 Score = 89.9 bits (224), Expect = 3e-20
 Identities = 53/199 (26%), Positives = 96/199 (48%), Gaps = 5/199 (2%)

Query: 24  ELKELWGMALPMTGMNILVFIRAVVSVLFLGRLGSLELAGGALSIGFTNITGYSVLVGLA 83
           EL+ L  +ALP+    +       V  +  GRLG+ +LA  AL         ++  +GL 
Sbjct: 1   ELRALLRLALPILIAQLAQMAMGFVDTVMAGRLGADDLAAVALGSSL-WFPVFTFGMGLL 59

Query: 84  SGLEPVCSQAYGSKNWDLLSLSLQRMILILFFAIIPISLLWLNLETVMIFMGQDKDITAM 143
             + P+ +QA+G+ +   +  ++++ + +     +P+ LL      ++  MGQ+ ++ A+
Sbjct: 60  LAVTPLVAQAHGAGDRRRIRRAVRQGLWLALLLSLPLMLLLWLAPPILPLMGQEPEVAAI 119

Query: 144 AATYTLYALPDLLTNTLLQPLRVFLRSQKVTKPMMWCTLVAVMFHVPLNYCLVMKL---- 199
           A  Y L     +    L Q LR FL +   T+P M  TL+A++ ++PLNY L+       
Sbjct: 120 ARGYLLALAWGIPPALLFQVLRSFLDALGRTRPAMVITLLALVLNIPLNYVLIFGKFGLP 179

Query: 200 KLGVPGVAMASVVCNLNML 218
            LG  G  +A+ +    M 
Sbjct: 180 ALGGAGAGLATAIVYWLMF 198

The integral membrane proteins from the MATE family are involved in exporting metabolites across the cell membrane and are responsible for multidrug resistance (MDR) in many bacteria and animals. This subfamily includes Vibrio cholerae NorM and functions most likely as a multidrug efflux pump, removing xenobiotics from the interior of the cell. The pump utilizes a cation gradient across the membrane to facilitate the export process. NorM appears to bind monovalent cations in an outward-facing conformation and may subsequently cycle through an inward-facing and outward-facing conformation to capture and release its substrate. Length = 435

>gnl|CDD|240542 cd13137, MATE_NorM_like, Subfamily of the multidrug and toxic compound extrusion (MATE)-like proteins similar to Thermotoga marina NorM

 Score = 79.9 bits (198), Expect = 9e-17
 Identities = 52/208 (25%), Positives = 100/208 (48%), Gaps = 6/208 (2%)

Query: 26  KELWGMALPMTGMNILVFIRAVVSVLFLGRLGSLELAGGALSIGFTNITGYSVLVGLASG 85
           + +W +A P+   N+L  +  +V V  +GRLG+  +A   L+     +    + + L +G
Sbjct: 1   RRIWSLAWPVILENLLQTLVGLVDVFMVGRLGAEAIAAVGLATQVLWLL-LVLNMALGTG 59

Query: 86  LEPVCSQAYGSKNWDLLSLSLQRMILILFFAIIPISLL-WLNLETVMIFMGQDKDITAMA 144
              + SQ+YG+ +++    +L + +L+     +P++LL  L  E ++  +G D ++ A+A
Sbjct: 60  TVALVSQSYGAGDYERARRALGQSLLLALLLSLPLALLGLLFAEPLLRLLGADPEVIALA 119

Query: 145 ATYTLYALPDLLTNTLLQPLRVFLRSQKVTKPMMWCTLVAVMFHVPLNYCLVMKL----K 200
            TY    L  +    L       LR    TK  M+  ++  + ++ L+Y L+  L     
Sbjct: 120 LTYLRIVLLGIPFFFLSLVGNAALRGAGDTKTPMYIMIIVNVLNIVLDYVLIFGLWGFPG 179

Query: 201 LGVPGVAMASVVCNLNMLKIGFSGLWFG 228
           LGV G A+A+V+  +    +    L  G
Sbjct: 180 LGVAGAALATVISRVVGALLLLFLLLRG 207

The integral membrane proteins from the MATE family are involved in exporting metabolites across the cell membrane and are responsible for multidrug resistance (MDR) in many bacteria and animals. A number of family members are involved in the synthesis of peptidoglycan components in bacteria. Length = 432

>gnl|CDD|240538 cd13133, MATE_like_7, Uncharacterized subfamily of the multidrug and toxic compound extrusion (MATE) proteins

 Score = 76.8 bits (190), Expect = 8e-16
 Identities = 44/196 (22%), Positives = 84/196 (42%), Gaps = 12/196 (6%)

Query: 25  LKELWGMALPM---TGMNILVFIRAVVSVLFLGRLGSLELAGGALSIGFTNITGYSVLVG 81
            +E+  +ALP+        ++         FLGRL  + LA    + G        +  G
Sbjct: 4   YREILKIALPLVLSMLSQTVMGF---TDRAFLGRLSEVALAASGPA-GVLYFAILMLFFG 59

Query: 82  LASGLEPVCSQAYGSKNWDLLSLSLQRMILILFFAIIPISLL-WLNLETVMIFMGQDKDI 140
           L+SG++   +Q  G+  +  +   L + +         ++LL  L    + + +G   ++
Sbjct: 60  LSSGVQVFVAQYNGAGRYSRIGRVLWQGLYFSLLLAPLLALLSALAAPLLFLLLGHSPEV 119

Query: 141 TAMAATYTLYALPDLLTNTLLQPLRVFLRSQKVTKPMMWCTLVAVMFHVPLNYCLVM-KL 199
            A+   Y    +     + L   LR F      T+ +M   LV V+ ++ L+Y L+  KL
Sbjct: 120 QALEVEYFRIRILGAPFSLLGAALRAFFSGIGRTRVVMVANLVMVVVNIVLDYALIFGKL 179

Query: 200 ---KLGVPGVAMASVV 212
               +G+ G A+A+V+
Sbjct: 180 GFPAMGIAGAAIATVI 195

The integral membrane proteins from the MATE family are involved in exporting metabolites across the cell membrane and are responsible for multidrug resistance (MDR) in many bacteria and animals. A number of family members are involved in the synthesis of peptidoglycan components in bacteria. Length = 438

>gnl|CDD|223608 COG0534, NorM, Na+-driven multidrug efflux pump [Defense mechanisms]

 Score = 66.5 bits (163), Expect = 3e-12
 Identities = 50/239 (20%), Positives = 97/239 (40%), Gaps = 24/239 (10%)

Query: 23  EELKELWGMALPMTGMNILVFIRAVVSVLFLGRLGSLELAGGALSIGFTNITGYSVLVGL 82
           + LKE+  + LP+   ++   +  ++  LF+ RLG++ LA   +++   +   +    G+
Sbjct: 238 KLLKEILRLGLPIFLESLSESLGFLLLTLFVARLGTVALAAYGIALRIASFI-FMPPFGI 296

Query: 83  ASGLEPVCSQAYGSKNWDLLSLSLQR-MILILFFAIIPISLLWLNLETVMIFMGQDKDIT 141
           A  +  +  Q  G+ N+     + +  + L L  A++   LL L  E ++     D ++ 
Sbjct: 297 AQAVTILVGQNLGAGNYKRARRAARLALKLSLLIALLIALLLLLFREPIISLFTTDPEVI 356

Query: 142 AMAATYTLYALPDLLTNTLLQPLRVFLRSQKVTKPMMWCTLVA-VMFHVPLNYCLVMKLK 200
           A+A    L A      + +   L   LR     K     +L++   F +PL Y L     
Sbjct: 357 ALAVILLLIAALFQPFDGIQFVLSGVLRGAGDAKIPFIISLLSYWGFRLPLAYLLGFFF- 415

Query: 201 LGVPGVAMASVVCNLNMLKIGFSGLWFGLLSAQAACAVSILYVVLVRTDWEAEAMKAMK 259
                              +G +G+W G   +    A+ +L + L R  W  +A+ A  
Sbjct: 416 -------------------LGLAGVWIGFPLSLILRAI-LLLLRLRRGRWRRKAVAAAS 454

Length = 455

>gnl|CDD|240539 cd13134, MATE_like_8, Uncharacterized subfamily of the multidrug and toxic compound extrusion (MATE) proteins

 Score = 64.4 bits (158), Expect = 1e-11
 Identities = 42/195 (21%), Positives = 79/195 (40%), Gaps = 6/195 (3%)

Query: 26  KELWGMALPMTGMNILVFIRAVVSVLFLGRLGSLELAGGALSIGFTNITGYSVLVGLASG 85
             L+ +A P+    +L  +   +    L R     +A   ++     +    +   +++G
Sbjct: 3   LSLFALAWPIFIELLLQMLLGTIDTFMLSRYSDNAVAAVGVANQILFL-LILIFSFISTG 61

Query: 86  LEPVCSQAYGSKNWDLLSLSLQRMILILFFAIIPISLLWLNL-ETVMIFMGQDKDITAMA 144
              + +Q  G+K+           +L      +  SLL L     ++  MG   ++ A+ 
Sbjct: 62  TSILIAQYLGAKDKKKARQIAGVALLFNLLLGLVFSLLLLFFGAELLRLMGLPPELLALG 121

Query: 145 ATYTLYALPDLLTNTLLQPLRVFLRSQKVTKPMMWCTLVAVMFHVPLNYCLVMKL----K 200
           +TY       L    L   L   LRS   TK  M+ +L+  + ++  NY L+       K
Sbjct: 122 STYLRIVGGSLFLQALSLTLSAILRSHGRTKIPMYVSLIMNILNIVGNYLLIFGWFGLPK 181

Query: 201 LGVPGVAMASVVCNL 215
           LGV GVA+++V+   
Sbjct: 182 LGVAGVAISTVISRA 196

The integral membrane proteins from the MATE family are involved in exporting metabolites across the cell membrane and are responsible for multidrug resistance (MDR) in many bacteria and animals. A number of family members are involved in the synthesis of peptidoglycan components in bacteria. Length = 438

>gnl|CDD|240541 cd13136, MATE_DinF_like, DinF and similar proteins, a subfamily of the multidrug and toxic compound extrusion (MATE)-like proteins

 Score = 63.0 bits (154), Expect = 4e-11
 Identities = 47/196 (23%), Positives = 84/196 (42%), Gaps = 17/196 (8%)

Query: 26  KELWGMALPMTGMNILVFIRAVVSVLFLGRLGSL-ELAGGALSIGFTNITGYSVLVGLAS 84
           +E+  +ALP    NI V +  +V    +G LGS   L   AL     N   + +   L  
Sbjct: 3   REILALALPAILSNITVPLLGLVDTAVVGHLGSAAYLGAVALGTTIFNTL-FWLFGFLRM 61

Query: 85  GLEPVCSQAYGSKNWDLLSLSLQRMILI-----LFFAIIPISLLWLNLETVMIFMGQDKD 139
           G   + +QA G+ + +     L R +L+     L   ++   LL L     ++ +G    
Sbjct: 62  GTTGLVAQALGAGDREEAIALLVRALLLALAIGLLLILLQSPLLAL----ALLLLGASAA 117

Query: 140 ITAMAATY---TLYALPDLLTNTLLQPLRVFLRSQKVTKPMMWCTLVAVMFHVPLNYCLV 196
           + A+A  Y    +   P +L N +      + R  + T+  +   +V  + ++ L+   V
Sbjct: 118 VAALARQYLRIRILGAPAVLLNYVATG---WFRGLQDTRTPLILQIVGNVVNIVLDPLFV 174

Query: 197 MKLKLGVPGVAMASVV 212
             L  GV G A+A+V+
Sbjct: 175 FGLGWGVAGAALATVI 190

Escherichia coli DinF is a membrane protein that has been found to protect cells against oxidative stress and bile salts. The expression of DinF is regulated as part of the SOS system. It may act by detoxifying oxidizing molecules that have the potential to damage DNA. Some member of this family have been reported to enhance the virulence of plant pathogenic bacteria by enhancing their ability to grow in the presence of toxic compounds. Proteins from the MATE family are involved in exporting metabolites across the cell membrane and are often responsible for multidrug resistance (MDR). Length = 424

>gnl|CDD|240548 cd13143, MATE_MepA_like, Subfamily of the multidrug and toxic compound extrusion (MATE)-like proteins similar to Streptococcus aureus MepA

 Score = 60.6 bits (148), Expect = 2e-10
 Identities = 41/194 (21%), Positives = 81/194 (41%), Gaps = 11/194 (5%)

Query: 28  LWGMALPMTGMNILVFIRAVVSVLFLGRL-GSLELAGGALSIGFTN-ITGYSVLVGLASG 85
               ALP     ++  +  +V  +F+G   G+L LA   L       +    +++G+   
Sbjct: 6   FLKFALPAIIGMLVNGLYNIVDGIFVGHGVGALALAAVNLVFPIIMLLMALGLMIGVGGA 65

Query: 86  LEPVCSQAYGSKNWD----LLSLSLQRMILILFFAIIPISLLWLNLETVMIFMGQDKDIT 141
              + S+  G+ + +    + S +L   +L L   ++   L  L L+ ++  +G   ++ 
Sbjct: 66  --SLISRRLGAGDREKANRIFSTAL---LLSLILGLLLTILGLLFLDPLLRLLGASGELL 120

Query: 142 AMAATYTLYALPDLLTNTLLQPLRVFLRSQKVTKPMMWCTLVAVMFHVPLNYCLVMKLKL 201
             A  Y    L       L   L   LR++   K  M   L+  + ++ L+   +  L L
Sbjct: 121 PYAVDYLRIILLGAPFTILSSVLNNLLRAEGKPKLAMLGMLIGAVLNIILDPLFIFVLGL 180

Query: 202 GVPGVAMASVVCNL 215
           G+ G A+A+V+  L
Sbjct: 181 GIAGAALATVIAQL 194

The integral membrane proteins from the MATE family are involved in exporting metabolites across the cell membrane and are responsible for multidrug resistance (MDR) in many bacteria and animals. This subfamily includes Streptococcus aureus MepA and Vibrio vulnificus VmrA and functions most likely as a multidrug efflux pump. Length = 426

>gnl|CDD|234981 PRK01766, PRK01766, multidrug efflux protein; Reviewed

 Score = 59.8 bits (146), Expect = 4e-10
 Identities = 57/215 (26%), Positives = 90/215 (41%), Gaps = 46/215 (21%)

Query: 23  EELKELWGMALPM-------TGMNILVFIRAVVSVLFLGRLGSLELAGGAL--SIGFTNI 73
            E ++L  +ALP+       T M    F+  V++    G + + +LA  A+  SI    I
Sbjct: 9   SEARQLLALALPILLAQVAQTAMG---FVDTVMA----GGVSATDLAAVAIGTSIWLPVI 61

Query: 74  TGYSVLVGLASGLEPVCSQAYGSKNWD----------LLSLSLQRMILILFFAIIPISLL 123
                  GL   L P+ +Q  G+   +           L+L L  +I+++ +  +P  L 
Sbjct: 62  LF---GHGLLLALTPIVAQLNGAGRRERIAHQVRQGLWLALFLSVLIMLVLYNAVPPILN 118

Query: 124 WLNLETVMIFMGQDKDITAMAATYTLYALPDLLTNTLLQPLRVFLRSQKVTKPMMWCTLV 183
            +NLE  +       DI        L+ +P  L   L Q LR F+     TKP M    +
Sbjct: 119 MMNLEPEV------ADIAVGYLHALLWGIPAYL---LYQVLRSFIDGLGKTKPTMVIGFL 169

Query: 184 AVMFHVPLNYCLVMKLKLGVP-------GVAMASV 211
            ++ ++PLNY  +   K G P       GVA A V
Sbjct: 170 GLLINIPLNYIFIYG-KFGFPELGGVGCGVATAIV 203

Length = 456

>gnl|CDD|240527 cd12082, MATE_like, Multidrug and toxic compound extrusion family and similar proteins

 Score = 57.7 bits (140), Expect = 2e-09
 Identities = 43/188 (22%), Positives = 90/188 (47%), Gaps = 5/188 (2%)

Query: 32  ALPMTGMNILVFIRAVVSVLFLGRLGSLELAGGALSIGFTNITGYSVLVGLASGLEPVCS 91
           A P+    +L  +  +V   FLGRL    LA   L+     +   ++ VGL+ G   + S
Sbjct: 1   AAPLLLSMLLQTLYNLVDTFFLGRLLGDALAAVGLAFPLIALL-IALGVGLSVGTSALIS 59

Query: 92  QAYGSKNWDLLSLSLQRMILILFFAIIPISLLWLNLETVMI-FMGQDKDITAMAATYTLY 150
           QA G+ + +     L + I++     + ++ L L    +++  +G ++++  +AATY   
Sbjct: 60  QAIGAGDEEKARRVLVQSIVLAILLGLLLAALLLFFSPLILSLLGAEEEVIELAATYLTI 119

Query: 151 ALPDLLTNTLLQPLRVFLRSQKVTKPMMWCTLVAVMFHVPLNYCLVM---KLKLGVPGVA 207
            +  L    L   L   L+ +  T+  M  ++++ + ++ L+  L+      +LG+ G A
Sbjct: 120 LILGLPITFLGAVLSGILQGEGDTRTAMIISVLSNLLNILLDPLLIFGLGPPELGIAGAA 179

Query: 208 MASVVCNL 215
           +A+V+  +
Sbjct: 180 LATVISYV 187

The integral membrane proteins from the MATE family are involved in exporting metabolites across the cell membrane and are responsible for multidrug resistance (MDR) in many bacteria and animals. MATE has also been identified as a large multigene family in plants, where the proteins are linked to disease resistance. A number of family members are involved in the synthesis of peptidoglycan components in bacteria. Length = 420

>gnl|CDD|240540 cd13135, MATE_like_9, Uncharacterized subfamily of the multidrug and toxic compound extrusion (MATE) proteins

 Score = 56.1 bits (136), Expect = 7e-09
 Identities = 46/196 (23%), Positives = 90/196 (45%), Gaps = 8/196 (4%)

Query: 26  KELWGMALPMTGMNILVFIRAVVSVLFLGRLGSLELAG-GALSIGFTNITGYSVLVGLAS 84
           K++  +A+P+   N++  ++ +V   FLGR+     +  G ++  F  ITG   L  ++ 
Sbjct: 1   KKINHIAIPLILQNLVSQLQMLVDRAFLGRISIRYYSAVGNVTTPFNTITG--FLGSISI 58

Query: 85  GLEPVCSQAYGSKNWDLLSLSLQRMILILFFAIIPISLLW-LNLETVMIFMGQDKDITAM 143
           G   + SQ+ G+K+   ++      I+      + + LLW      + +  G D  I   
Sbjct: 59  GFTILGSQSVGAKDIKRINDYAISSIVYNSIIGVILFLLWLFGARIIFVLFGVDGQILGY 118

Query: 144 AATYTLYALPDLLTNTLLQPLRVFLRSQKVTKPMMWCTLVAVMFHVPLNYCLVM-KL--- 199
           +  Y       LL   +L      L+    TKP+M+  ++  + +V L+Y L+       
Sbjct: 119 SINYVRIFSIYLLLLGILFTFSSILQGIGETKPIMYGGIIKNLLNVILDYVLIFGNFGFP 178

Query: 200 KLGVPGVAMASVVCNL 215
           +LG+ G A+A+ + N+
Sbjct: 179 RLGIIGAAIATTIANV 194

The integral membrane proteins from the MATE family are involved in exporting metabolites across the cell membrane and are responsible for multidrug resistance (MDR) in many bacteria and animals. A number of family members are involved in the synthesis of peptidoglycan components in bacteria. Length = 429

>gnl|CDD|240543 cd13138, MATE_yoeA_like, Subfamily of the multidrug and toxic compound extrusion (MATE)-like proteins similar to Bacillus subtilis yoeA

 Score = 52.5 bits (127), Expect = 1e-07
 Identities = 41/187 (21%), Positives = 82/187 (43%), Gaps = 9/187 (4%)

Query: 31  MALPMTGMNILVFIRAVVSVLFLGRLGSLELAGGALSIGFTNITGY-SVLVGLASGLEPV 89
            ALP+   N+L  +  +V +L +G+   +  A  A+S G   I    ++ +GL+ G   +
Sbjct: 8   FALPLLLSNLLQQLYNLVDLLIVGQFLGVA-ALAAVSNGSPIIFLLTAIGMGLSMGGTIL 66

Query: 90  CSQAYGSKNWDLLS-LSLQRMILILFFAIIPISLLWLNLETVMIFMGQDKDITAMAATY- 147
            SQ  G+K+ +         ++L L   I+   L  L    ++  M    +I  +A +Y 
Sbjct: 67  ISQYIGAKDEEKAKKAVGTLLVLFLILGIVLTILGLLFAPPILRLMNTPAEILELAVSYL 126

Query: 148 --TLYALPDLLTNTLLQPLRVFLRSQKVTKPMMWCTLVAVMFHVPLNYCLVMKLKLGVPG 205
                 +P +            LR    +K  ++  ++A + ++ L+   +    +GV G
Sbjct: 127 RICFLGIPFIFGYNAYS---AILRGLGDSKTPLYFVIIACVLNIILDLLFIAVFHMGVAG 183

Query: 206 VAMASVV 212
            A+A+V+
Sbjct: 184 AALATVI 190

The integral membrane proteins from the MATE family are involved in exporting metabolites across the cell membrane and are responsible for multidrug resistance (MDR) in many bacteria and animals. A number of family members are involved in the synthesis of peptidoglycan components in bacteria. Length = 431

>gnl|CDD|240536 cd13131, MATE_NorM_like, Subfamily of the multidrug and toxic compound extrusion (MATE)-like proteins similar to Vibrio cholerae NorM

 Score = 51.7 bits (125), Expect = 2e-07
 Identities = 55/230 (23%), Positives = 93/230 (40%), Gaps = 26/230 (11%)

Query: 23  EELKELWGMALPMTGMNIL--VFIRAVVSVLFLGRLGSLELAGGALSIGFTNITGYSVLV 80
             LKEL  + LP+ G+ I   V + A V+ L +GRLG+  LA   +++ F ++  + V +
Sbjct: 226 ARLKELLRLGLPI-GLTIFFEVSLFAAVA-LLMGRLGTTVLAAHQIALNFASLL-FMVPL 282

Query: 81  GLASGLEPVCSQAYGSKNWDLLSL-SLQRMILILFFAIIPISLLWLNLETVMIFMGQDKD 139
           G++         A G+ +        L  + L + FA +   LL L  E +      D  
Sbjct: 283 GISMAATVRVGFALGAGDPADARRAGLVGLGLGVGFAALTALLLLLFPEQIAGLYTNDPA 342

Query: 140 ITAMAATYTLYALPDLLTNTLLQPLRVFLRSQKVTKPMMWCTLVAV-MFHVPLNYCLVMK 198
           + A+AA+  ++A    L + +       LR  K T+      L++     +PL Y L   
Sbjct: 343 VIALAASLLVFAALFQLFDGIQVVAAGALRGYKDTRVPFLLALISYWGIGLPLGYLLAFT 402

Query: 199 LKLGVPGVAMASVVCNLNMLKIGFSGLWFGLLSAQAACAVSILYVVLVRT 248
             LG                     G+W GL+   A  A+ +L+      
Sbjct: 403 TGLGA-------------------FGVWIGLIIGLALAAILLLWRFRRLQ 433

The integral membrane proteins from the MATE family are involved in exporting metabolites across the cell membrane and are responsible for multidrug resistance (MDR) in many bacteria and animals. This subfamily includes Vibrio cholerae NorM and functions most likely as a multidrug efflux pump, removing xenobiotics from the interior of the cell. The pump utilizes a cation gradient across the membrane to facilitate the export process. NorM appears to bind monovalent cations in an outward-facing conformation and may subsequently cycle through an inward-facing and outward-facing conformation to capture and release its substrate. Length = 435

>gnl|CDD|240546 cd13141, MATE_like_13, Uncharacterized subfamily of the multidrug and toxic compound extrusion (MATE) proteins

 Score = 51.5 bits (124), Expect = 2e-07
 Identities = 54/199 (27%), Positives = 87/199 (43%), Gaps = 20/199 (10%)

Query: 26  KELWGMALPMTGMNILVFIRAVVSVLFLGRLGSLELAGGALS--IGFTNITGYSVL-VGL 82
           K +  MALP+    I+  +  +V + F+G+LG   LAG +L+  + F  +    VL VG 
Sbjct: 11  KHIISMALPIAIGMIIQTLYFLVDLYFVGQLGDAALAGVSLAGNVMFFVMALTQVLNVGT 70

Query: 83  ASGLEPVCSQAYGSKNWDLLSLSL-QRMILILFFAIIPISLLWLNLETVMIFMGQDKDIT 141
           A+    + S A G K+    +    Q ++L     ++ + L +L     +  +  D    
Sbjct: 71  AA----LVSHAVGRKDQGEANAVFNQSLLLAAVLGLVVLVLGYLFGRLYLETLAADAATV 126

Query: 142 AMAATYTLYALPDLLTNTLLQPLRVFLRSQKVTKPMMWCTLVAVMFHVPLNYCLVMKL-- 199
             A TY  + +P L    +L  L   LR   + KP M   ++AV+    LN  L   L  
Sbjct: 127 EAATTYLYWFIPSLALQFILTVLGAALRGTGIVKPFMVIQILAVL----LNIILAPILIT 182

Query: 200 ------KLGVPGVAMASVV 212
                  LGV G  +AS +
Sbjct: 183 GWGTGRALGVAGAGLASSI 201

The integral membrane proteins from the MATE family are involved in exporting metabolites across the cell membrane and are responsible for multidrug resistance (MDR) in many bacteria and animals. A number of family members are involved in the synthesis of peptidoglycan components in bacteria. Length = 443

>gnl|CDD|240527 cd12082, MATE_like, Multidrug and toxic compound extrusion family and similar proteins

 Score = 48.9 bits (117), Expect = 1e-06
 Identities = 48/222 (21%), Positives = 91/222 (40%), Gaps = 13/222 (5%)

Query: 12  SHKLPSFSQVVEELKELWGMALPMTGMNILVFIRAVVSVLFLGRL-GSLELAGGALSIGF 70
             KL      +E L+ L  + LP    N L+ +  ++ V  +    G+  LA   ++   
Sbjct: 205 KFKLSLLKPDLELLRRLLRIGLPSAIQNSLLSLGLLIIVAIVAAFGGAAALAAYTVAFRI 264

Query: 71  TNITGYSVLVGLASGLEPVCSQAYGSKNWD-LLSLSLQRMILILFFAIIPISLLWLNLET 129
            ++  +   +GLA    PV  Q  G+ N+D    ++   +++ L    +   L+ L  E 
Sbjct: 265 ASLA-FMPALGLAQAALPVVGQNLGAGNFDRARRITWVALLIGLLIGAVLGLLILLFPEP 323

Query: 130 VMIFMGQDKDITAMAATY----TLYALPDLLTNTLLQPLRVFLRSQKVTKPMMWCTLVAV 185
           ++     D +   +A +Y     +Y L   +   L      F  + +  K ++   L   
Sbjct: 324 ILSLFTNDPEFLELAVSYLRILAIYYLFVGIGYVLQA---GFQAAGRTLKSLIVSLLSYW 380

Query: 186 MFHVPLNYCLVMKLKLGVPGVAMASVVCNLNMLKIGFSGLWF 227
           +  +PL Y L   L LG+ G+ +A V+  +  L      L+F
Sbjct: 381 VVRLPLAYVLAY-LGLGLYGIWLALVISLI--LAALVLLLFF 419

The integral membrane proteins from the MATE family are involved in exporting metabolites across the cell membrane and are responsible for multidrug resistance (MDR) in many bacteria and animals. MATE has also been identified as a large multigene family in plants, where the proteins are linked to disease resistance. A number of family members are involved in the synthesis of peptidoglycan components in bacteria. Length = 420

>gnl|CDD|240543 cd13138, MATE_yoeA_like, Subfamily of the multidrug and toxic compound extrusion (MATE)-like proteins similar to Bacillus subtilis yoeA

 Score = 49.0 bits (118), Expect = 1e-06
 Identities = 39/202 (19%), Positives = 75/202 (37%), Gaps = 3/202 (1%)

Query: 23  EELKELWGMALPMTGMNILVFIRAVVSVLFLGRLGSLELAGGALSIGFTNITGYSVLVGL 82
           E LKE+  + LP      LV I  ++    +   G +  A   ++    +   +     +
Sbjct: 222 EILKEILKIGLPSALQQSLVSISFLIINSIVNSYGVVASAAYGIANKINSFA-FLPPSAI 280

Query: 83  ASGLEPVCSQAYGSKNWDLLSLSLQR-MILILFFAIIPISLLWLNLETVMIFMGQDKDIT 141
              +    +Q  G+   +     L+  +I+ L   +I I L++     ++     D ++ 
Sbjct: 281 GQAVSTFVAQNIGAGKIERAKKGLRTGIIISLIIGLIIILLVFFFAPQLLGLFTSDPEVI 340

Query: 142 AMAATYTLYALPDLLTNTLLQPLRVFLR-SQKVTKPMMWCTLVAVMFHVPLNYCLVMKLK 200
            + A Y      D +   +L       R   K   PM+   L   +  +PL Y L     
Sbjct: 341 EIGAEYLRIYSIDYILFGILFVFNGLFRGLGKTKFPMIISILRLWLVRIPLAYLLSRLTG 400

Query: 201 LGVPGVAMASVVCNLNMLKIGF 222
           LG+ G+ +A  + N+    I  
Sbjct: 401 LGLFGIWLAMPISNILSAIICI 422

The integral membrane proteins from the MATE family are involved in exporting metabolites across the cell membrane and are responsible for multidrug resistance (MDR) in many bacteria and animals. A number of family members are involved in the synthesis of peptidoglycan components in bacteria. Length = 431

>gnl|CDD|240545 cd13140, MATE_like_1, Uncharacterized subfamily of the multidrug and toxic compound extrusion (MATE) proteins

 Score = 47.9 bits (115), Expect = 3e-06
 Identities = 46/214 (21%), Positives = 89/214 (41%), Gaps = 17/214 (7%)

Query: 25  LKELWGMALPMTGMNILVFIRAVVSVLFLGRLGSLELAGGALSIGFTNITGYSVLVGLAS 84
           LK L  +ALP+ G + +     +  + ++GRLGS  +A    + GF     Y++ +    
Sbjct: 4   LKTLLRLALPIMGTSFIQMAYNLTDMFWVGRLGSDAVAA-VGTAGFFVWLAYALALLSKI 62

Query: 85  GLEPVCSQAYGSKNWDLLSLSLQRMILI-LFFAIIPISLLWLNLETVMIFMG-QDKDITA 142
           G +   SQ+ G+K+        +  + + L   I+   LL L  + ++ F    D ++ +
Sbjct: 63  GAQVKVSQSIGAKDEKEARKYARNALQLNLLLGILYGLLLLLFAKPLIGFFNLGDAEVIS 122

Query: 143 MAATY---TLYALPDLLTNTLLQPLRVFLRSQKVTKPMMWCTLVAVMFHVPLNYCLV--- 196
           +A TY       L     N +   +     +   +K       + ++ ++ L+  L+   
Sbjct: 123 LAITYLRIVALGLIFSFLNPVFTGI---FNALGDSKTPFIINAIGLVLNIILDPLLIFGF 179

Query: 197 -MKLKLGVPGVAMASVVCNLNMLKIGFSGLWFGL 229
                LGV G A+A+V+       I F    + L
Sbjct: 180 GPFPALGVAGAALATVLAQA----IVFLLFLYAL 209

The integral membrane proteins from the MATE family are involved in exporting metabolites across the cell membrane and are responsible for multidrug resistance (MDR) in many bacteria and animals. MATE has also been identified as a large multigene family in plants, where the proteins are linked to disease resistance. A number of family members are involved in the synthesis of peptidoglycan components in bacteria. Length = 435

>gnl|CDD|225153 COG2244, RfbX, Membrane protein involved in the export of O-antigen and teichoic acid [General function prediction only]

 Score = 46.3 bits (110), Expect = 9e-06
 Identities = 45/201 (22%), Positives = 78/201 (38%), Gaps = 5/201 (2%)

Query: 14  KLPSFSQVVEELKELWGMALPMTGMNILVFIRAVVSVLFLGRLGSLELAGGALSIGFTNI 73
           K P     +  LKEL    LP+   ++L F+   +  L LG        G   +      
Sbjct: 201 KRPILRFSLALLKELLRFGLPLLLSSLLNFLFTNIDTLLLGLFLGPAQVGIYSAAQRLVS 260

Query: 74  TGYSVLVGLASGLEPVCSQAYGSKNWDLLSLSLQRMILILFFAIIPIS--LLWLNLETVM 131
               V   L   L P  S+AY   +   L   L++ + +L    IP    LL L    + 
Sbjct: 261 LLLIVASALNRVLFPALSRAYAEGDRKALKKLLRQSLKLLLLISIPALLGLLLLAPPIIT 320

Query: 132 IFMGQDKDITAMAATYTLYALPDLLTNTLLQPLRVFLRSQKVTKPMMWCTLVAVMFHVPL 191
           +  G+     A AA          L  +L+      L++    + ++  +L++ + ++ L
Sbjct: 321 LLFGEK---YASAAPILQLLALAGLFLSLVSLTSSLLQALGKQRLLLLISLISALLNLIL 377

Query: 192 NYCLVMKLKLGVPGVAMASVV 212
           N  L+ +  L    +A ASV+
Sbjct: 378 NLLLIPRFGLIGAAIATASVI 398

Length = 480

>gnl|CDD|240529 cd13124, MATE_SpoVB_like, Stage V sporulation protein B, also known as Stage III sporulation protein F, and related proteins

 Score = 42.5 bits (101), Expect = 2e-04
 Identities = 41/200 (20%), Positives = 81/200 (40%), Gaps = 17/200 (8%)

Query: 25  LKELWGMALPMTGMN-ILVFIRAVVSVLFLGRLGSLELAGGALSIGFTNITGY------- 76
           LKEL   A+P+T  + IL  ++ + S     RL +  L+    +  +  +TG        
Sbjct: 223 LKELLSYAIPITLSSLILPLLQLIDSFTVPRRLQAAGLSESEATALYGILTGRAQPLVQL 282

Query: 77  --SVLVGLASGLEPVCSQAYGSKNWDLLSLSLQRMILILFFAIIPISL-LWLNLETVMIF 133
              +   L++ L P  S+AY   +   L   + + + +     +P ++ L +  E +   
Sbjct: 283 PTVIATALSTSLVPAISEAYAKGDKKELRRRINQALRLTLLIGLPAAVGLAVLAEPINTL 342

Query: 134 MGQDKDITAMAATYTLYALPDLLTNTLLQPLRVFLRSQKVTKPMMWCTLVAVMFHVPLNY 193
           +  D +   +        L      +L Q     L+     K  +   L+ ++  + LNY
Sbjct: 343 LFGDSEGGLILQILAPSILF----LSLQQVTAAILQGLGKVKIPVINLLIGLLVKIVLNY 398

Query: 194 CLVMKLKLGVPGVAMASVVC 213
            L+     G+ G A+A+V+ 
Sbjct: 399 VLIP--IFGIYGAAIATVIG 416

The integral membrane protein SpoVB has been implicated in the biosynthesis of the peptidoglycan component of the spore cortex in Bacillus subtilis. This model represents a subfamily of the multidrug and toxic compound extrusion (MATE)-like proteins. Proteins from the MATE family are involved in exporting metabolites across the cell membrane and are often responsible for multidrug resistance (MDR). Length = 434

>gnl|CDD|240542 cd13137, MATE_NorM_like, Subfamily of the multidrug and toxic compound extrusion (MATE)-like proteins similar to Thermotoga marina NorM

 Score = 41.7 bits (99), Expect = 3e-04
 Identities = 45/219 (20%), Positives = 79/219 (36%), Gaps = 39/219 (17%)

Query: 14  KLPSFSQVVEELKELWGMALPMTGMNILVFIRAVVSVLFLGRLGSLELAGGALSIG---- 69
               F    + +K+L  + LP     +L  +  +V +  +   G+  LA  A  IG    
Sbjct: 214 SFKGFRLDRKIIKKLLRIGLPAGLEQLLRSLGFLVLLAIVASYGTAALA--AYQIGLRIE 271

Query: 70  -FTNITGY------SVLVGLASGLEPVCSQAYGSKNWDLLSLSLQRMILILFFAIIPIS- 121
               + G+      S LVG          Q  G+ + D      +R + +    +  +  
Sbjct: 272 SLAFMPGFGFSMAASTLVG----------QNLGAGDPDEARRYGKRALRLGVLFMGLLGL 321

Query: 122 LLWLNLETVMIFMGQDKDITAMAATYTLYALPDLLTNTLLQPLRVF-------LRSQKVT 174
           LL++    +      D ++  +   Y       L    L QP           LR    T
Sbjct: 322 LLFIFAPPLASLFTPDPEVIELGVLY-------LRIVALSQPFLAISFVLSGALRGAGDT 374

Query: 175 KPMMWCTLVAVM-FHVPLNYCLVMKLKLGVPGVAMASVV 212
           +P +   L+++    +PL Y L   L LG+ G+ +A  V
Sbjct: 375 RPPLIINLISMWLVRLPLAYLLGFVLGLGLTGIWLAMFV 413

The integral membrane proteins from the MATE family are involved in exporting metabolites across the cell membrane and are responsible for multidrug resistance (MDR) in many bacteria and animals. A number of family members are involved in the synthesis of peptidoglycan components in bacteria. Length = 432

>gnl|CDD|240551 cd13146, MATE_like_6, Uncharacterized subfamily of the multidrug and toxic compound extrusion (MATE) proteins

 Score = 42.0 bits (99), Expect = 3e-04
 Identities = 33/139 (23%), Positives = 65/139 (46%), Gaps = 1/139 (0%)

Query: 81  GLASGLEPVCSQAYGSKNWDLLSLSLQR-MILILFFAIIPISLLWLNLETVMIFMGQDKD 139
           G+  G+  + ++A G++    L  +    + L L  A + + L ++  E ++  +G    
Sbjct: 65  GIQVGVSSLLARAIGAQRAKELDQAADSGLALALLAATVIVVLGYIFAEPLLQLLGAKGL 124

Query: 140 ITAMAATYTLYALPDLLTNTLLQPLRVFLRSQKVTKPMMWCTLVAVMFHVPLNYCLVMKL 199
           +   A  Y  Y+LP +    L+  L   L+ +  TK MM   L+  + ++ L+  L+   
Sbjct: 125 LLEYALEYFYYSLPGVPFIMLIGVLMGVLQGEGRTKYMMMAMLIGTVVNIVLDPILIFVF 184

Query: 200 KLGVPGVAMASVVCNLNML 218
            +GV G A+A+V+     L
Sbjct: 185 DMGVKGAALATVLAQAISL 203

The integral membrane proteins from the MATE family are involved in exporting metabolites across the cell membrane and are responsible for multidrug resistance (MDR) in many bacteria and animals. A number of family members are involved in the synthesis of peptidoglycan components in bacteria. Length = 433

>gnl|CDD|182413 PRK10367, PRK10367, DNA-damage-inducible SOS response protein; Provisional

 Score = 42.0 bits (99), Expect = 3e-04
 Identities = 57/206 (27%), Positives = 98/206 (47%), Gaps = 9/206 (4%)

Query: 26  KELWGMALPMTGMNILVFIRAVVSVLFLGRLGSLELAGGALSIGFTNITG-YSVLVGLAS 84
           K LW +ALPM   NI V +  +V    +G L S    GG +++G T  +  + +L+ L  
Sbjct: 9   KALWRLALPMIFSNITVPLLGLVDTAVIGHLDSPVYLGG-VAVGATATSFLFMLLLFLRM 67

Query: 85  GLEPVCSQAYGSKNWDLLSLSLQRMILILFFAIIPISLLWLNLETVMI-FMGQDKDITAM 143
               + +QA+G+KN   L+ +L + +L+   A   I+LL   L  + +  +G  + +   
Sbjct: 68  STTGLTAQAFGAKNPQALARALVQPLLLALGAGALIALLRTPLIDLALHIVGGSEAVLEQ 127

Query: 144 AATYT---LYALPDLLTNTLLQPLRVFLRSQKVTKPMMWCTLVAVMFHVPLNYCLVMKLK 200
           A  +      + P  L N +L  L   L  Q    P++   +V  + ++ L+  LVM L 
Sbjct: 128 ARRFLEIRWLSAPASLANLVL--LGWLLGVQYARAPVI-LLVVGNILNIVLDLWLVMGLH 184

Query: 201 LGVPGVAMASVVCNLNMLKIGFSGLW 226
           + V G A+A+V+     L IG   + 
Sbjct: 185 MNVQGAALATVIAEYATLLIGLLMVR 210

Length = 441

>gnl|CDD|240537 cd13132, MATE_eukaryotic, Eukaryotic members of the multidrug and toxic compound extrusion (MATE) family

 Score = 41.4 bits (98), Expect = 4e-04
 Identities = 17/38 (44%), Positives = 25/38 (65%), Gaps = 1/38 (2%)

Query: 217 MLKIGFSGLWFGLLSAQAACAVSILYVVLVRTDWEAEA 254
           +L +G  GLW GL++     AV +L ++L RTDW+ EA
Sbjct: 398 VLGLGLKGLWIGLIAGLILQAVILLLIIL-RTDWDKEA 434

The integral membrane proteins from the MATE family are involved in exporting metabolites across the cell membrane and are responsible for multidrug resistance (MDR) in many bacteria and animals. MATE has also been identified as a large multigene family in plants, where the proteins are linked to disease resistance. A number of family members are involved in the synthesis of peptidoglycan components in bacteria. This subfamily, which is restricted to eukaryotes, contains vertebrate solute transporters responsible for secretion of cationic drugs across the brush border membranes, yeast proteins located in the vacuole membrane, and plant proteins involved in disease resistance and iron homeostatis under osmotic stress. Length = 436

>gnl|CDD|240539 cd13134, MATE_like_8, Uncharacterized subfamily of the multidrug and toxic compound extrusion (MATE) proteins

 Score = 41.3 bits (98), Expect = 4e-04
 Identities = 49/199 (24%), Positives = 87/199 (43%), Gaps = 21/199 (10%)

Query: 23  EELKELWGMALPMTGMNILVFIRAVVSVLFLGRLGSLELAGGALSIGFTNITGYSVL--V 80
           + LK++  + LP  G  +   +   V   F+ RLG+  LA  A +   +NI+ +  L  +
Sbjct: 225 KLLKKILKIGLPSAGEELSYNLSQTVITAFIARLGTAALA--ARTY-ASNISMFVFLFSL 281

Query: 81  GLASGLEPVCSQAYGSKNWDLLSLSLQRMILI-LFFAIIPISLLWLNLETVMIFMGQDKD 139
            +    + +     G+ ++D     + + + I L  ++    LL L  E ++     D +
Sbjct: 282 AIGQATQIIVGHLVGAGDFDEAYKRVLKSLKIGLLVSLAVALLLALFREPILGLFTDDPE 341

Query: 140 ITAMAATYTLYALPDLLTNTLLQPLRVF-------LRSQKVTK-PMMWCTLVAVMFHVPL 191
           I A+  T        LL + LL+P R F       LR+    + P++   +      VPL
Sbjct: 342 IIALGKTL-------LLISILLEPGRAFNIVLIGSLRAAGDARFPVLIGIISMWGISVPL 394

Query: 192 NYCLVMKLKLGVPGVAMAS 210
            Y L + L LG+ GV +A 
Sbjct: 395 AYLLGIVLGLGLLGVWIAF 413

The integral membrane proteins from the MATE family are involved in exporting metabolites across the cell membrane and are responsible for multidrug resistance (MDR) in many bacteria and animals. A number of family members are involved in the synthesis of peptidoglycan components in bacteria. Length = 438

>gnl|CDD|240544 cd13139, MATE_like_14, Uncharacterized subfamily of the multidrug and toxic compound extrusion (MATE) proteins

 Score = 40.3 bits (95), Expect = 8e-04
 Identities = 39/175 (22%), Positives = 74/175 (42%), Gaps = 12/175 (6%)

Query: 46  AVVSVLFLGRLGSLELAGGALSIGFTNIT---GYSVLVGLASGLEPVCSQAYGSKNWDLL 102
           AVV + F+ RLG+L +A    ++G T       YS+ +GL+     + ++  G K+ +  
Sbjct: 34  AVVDLYFVSRLGALAIA----TVGLTESVLTIVYSIAIGLSMAATALVARRIGEKDPEGA 89

Query: 103 SLS-LQRMILILFFAIIPISLLWLNLETVMIFMGQDKDITAMAATYTLYALPDLLTNTLL 161
             + +Q ++L +  ++I   L +   E ++  MG    + A    YT           LL
Sbjct: 90  GFAAVQAILLGVALSLILSILGYFFAEDILSLMGASPAVIAEGYGYTRIMFGGNGFIMLL 149

Query: 162 QPLRVFLRSQKVTKPMMWCTLVAVMFHVPLNYCLVMKL----KLGVPGVAMASVV 212
             +    R        M    +A   ++ L+   +  L     +GV G A+A+ +
Sbjct: 150 FLINGIFRGAGDAAIAMRSLWLANGLNIILDPLFIFGLGPIPAMGVTGAAIATTI 204

The integral membrane proteins from the MATE family are involved in exporting metabolites across the cell membrane and are responsible for multidrug resistance (MDR) in many bacteria and animals. A number of family members are involved in the synthesis of peptidoglycan components in bacteria. Length = 448

>gnl|CDD|166843 PRK00187, PRK00187, multidrug efflux protein NorA; Provisional

 Score = 40.1 bits (94), Expect = 0.001
 Identities = 49/206 (23%), Positives = 90/206 (43%), Gaps = 21/206 (10%)

Query: 24  ELKELWGMALPMTGMNILVFIRAVVSVLFLGRLGSLELAGGALSIGFTNITGYSVL---- 79
           ELK +  +A P+    +   +      L +GRLG   LAGG L         YS +    
Sbjct: 8   ELKAILRLAGPLIASQLAHMLMVFTDTLMMGRLGPEALAGGGLG-----AASYSFVSIFC 62

Query: 80  VGLASGLEPVCSQAYGSKNWDLLSLSLQRMILI-LFFAIIPISLLWLNLETVMIFMGQDK 138
           VG+ + +  + +  +G+ + +  +   Q  + +    A++   LLW NL+ +++  GQ  
Sbjct: 63  VGVIAAVGTLVAIRHGAGDIEGATRLAQAGLWLAWLLALVAALLLW-NLKPLLLLFGQAP 121

Query: 139 DITAMAATYTL---YALPDLLTNTLLQPLRVFLRSQKVTKPMMWCTLVAVMFHVPLNYCL 195
                A  +     +ALP  L+      LR F  +     P+M  +L   + ++ LNY L
Sbjct: 122 QNVDAAMQFLHLLPFALPGYLS---FMALRGFTSALGRAGPVMVISLAGAVANLLLNYAL 178

Query: 196 VMKL----KLGVPGVAMASVVCNLNM 217
           +       KLG+ G+ + + + +  M
Sbjct: 179 IEGWFGLPKLGLMGIGLVTALVSNGM 204

Length = 464

>gnl|CDD|240528 cd13123, MATE_MurJ_like, MurJ/MviN, a subfamily of the multidrug and toxic compound extrusion (MATE)-like proteins

 Score = 38.2 bits (90), Expect = 0.004
 Identities = 49/234 (20%), Positives = 91/234 (38%), Gaps = 35/234 (14%)

Query: 13  HKLPSFSQVVEELKELWGMALPMTGMNILVFIRAVVSVLFLGRLGSLELAGGALSIGFTN 72
              P        ++ +  + LP      +  I  +V  +    L      G   ++ + +
Sbjct: 202 RFRPRLDFRDPGVRRVLKLMLPALLGVSVSQINLLVDTILASFLP----EGSISALYYAD 257

Query: 73  I---TGYSVL-VGLASGLEPVCSQAYGSKNWDLLSLSLQRMILILFFAIIPIS--LLWLN 126
                   +  V +A+ L P  S+   + + D    +L R + ++ F ++P +  L+ L 
Sbjct: 258 RLYQLPLGIFGVAIATALLPRLSRLAAAGDLDEFRRTLSRGLRLVLFLLLPAAVGLIVLA 317

Query: 127 LETVMI------FMGQDKDITAMA-ATYTL----YALPDLLTNTLLQPLRVFLRSQKVTK 175
              V +      F  +D  +TA A A Y L    +AL  LL+       R F  + K TK
Sbjct: 318 EPIVRLLFERGAFTAEDTLMTASALAAYALGLPAFALVKLLS-------RAFY-ALKDTK 369

Query: 176 PMMWCTLVAVMFHVPLNYCLVMKLKLGVPGVAMASVVCNLNMLKIGFSGLWFGL 229
             +   ++AV  ++ LN  L+    LG  G+A+A+ +       +    L   L
Sbjct: 370 TPVKIAVIAVAVNILLNLLLI--KPLGHVGLALATSLSAW----VNALLLLVLL 417

Escherichia coli MurJ (MviN) has been identified as essential for murein biosynthesis. It has been suggested that MurJ functions as the peptidoglycan lipid II flippase which is involved in translocation of lipid-anchored peptidoglycan precursors across the cytoplasmic membrane, though results obtained in Bacillus subtilis seem to indicate that its MurJ homologs are not essential for growth. Some MviN family members (e.g. in Mycobacterium tuberculosis) possess an extended C-terminal region that contains an intracellular pseudo-kinase domain and an extracellular domain resembling carbohydrate-binding proteins. Proteins from the MATE family are involved in exporting metabolites across the cell membrane and are often responsible for multidrug resistance (MDR). Length = 420

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	306
COG0534	455	NorM Na+-driven multidrug efflux pump [Defense mec	100.0
PRK10367	441	DNA-damage-inducible SOS response protein; Provisi	100.0
PRK00187	464	multidrug efflux protein NorA; Provisional	100.0
PRK10189	478	MATE family multidrug exporter; Provisional	100.0
PRK09575	453	vmrA multidrug efflux pump VmrA; Reviewed	100.0
PRK01766	456	multidrug efflux protein; Reviewed	99.97
PRK00187	464	multidrug efflux protein NorA; Provisional	99.96
COG0534	455	NorM Na+-driven multidrug efflux pump [Defense mec	99.95
PRK10189	478	MATE family multidrug exporter; Provisional	99.95
PRK01766	456	multidrug efflux protein; Reviewed	99.94
PRK09575	453	vmrA multidrug efflux pump VmrA; Reviewed	99.94
TIGR00797	342	matE putative efflux protein, MATE family. The MAT	99.94
KOG1347	473	consensus Uncharacterized membrane protein, predic	99.91
TIGR01695	502	mviN integral membrane protein MviN. This model re	99.9
PRK10367	441	DNA-damage-inducible SOS response protein; Provisi	99.89
PF01554	162	MatE: MatE; InterPro: IPR002528 Characterised memb	99.86
PF03023	451	MVIN: MviN-like protein; InterPro: IPR004268 This	99.84
TIGR02900	488	spore_V_B stage V sporulation protein B. SpoVB is	99.84
PRK15099	416	O-antigen translocase; Provisional	99.81
COG0728	518	MviN Uncharacterized membrane protein, putative vi	99.78
PRK10459	492	colanic acid exporter; Provisional	99.76
TIGR01695	502	mviN integral membrane protein MviN. This model re	99.74
PRK15099	416	O-antigen translocase; Provisional	99.73
COG2244	480	RfbX Membrane protein involved in the export of O-	99.72
TIGR02900	488	spore_V_B stage V sporulation protein B. SpoVB is	99.7
TIGR00797	342	matE putative efflux protein, MATE family. The MAT	99.63
KOG1347	473	consensus Uncharacterized membrane protein, predic	99.55
PF03023	451	MVIN: MviN-like protein; InterPro: IPR004268 This	99.31
COG0728	518	MviN Uncharacterized membrane protein, putative vi	99.14
PF01943	273	Polysacc_synt: Polysaccharide biosynthesis protein	99.06
PF13440	251	Polysacc_synt_3: Polysaccharide biosynthesis prote	98.94
PRK10459	492	colanic acid exporter; Provisional	98.92
PF04506	549	Rft-1: Rft protein; InterPro: IPR007594 Asymmetric	98.68
COG2244	480	RfbX Membrane protein involved in the export of O-	98.47
PF14667	146	Polysacc_synt_C: Polysaccharide biosynthesis C-ter	98.46
PF07260	345	ANKH: Progressive ankylosis protein (ANKH); InterP	98.14
KOG2864	530	consensus Nuclear division RFT1 protein [Cell cycl	98.02
PF01943	273	Polysacc_synt: Polysaccharide biosynthesis protein	97.91
PF13440	251	Polysacc_synt_3: Polysaccharide biosynthesis prote	97.32
COG4267	467	Predicted membrane protein [Function unknown]	81.05

>COG0534 NorM Na+-driven multidrug efflux pump [Defense mechanisms]

Probab=100.00  E-value=1.8e-35  Score=274.22  Aligned_cols=275  Identities=20%  Similarity=0.204  Sum_probs=235.3

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccChhhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhcCCChh
Q 021881           21 VVEELKELWGMALPMTGMNILVFIRAVVSVLFLGRLGSLELAGGALSIGFTNITGYSVLVGLASGLEPVCSQAYGSKNWD  100 (306)
Q Consensus        21 ~~~~~k~~l~~~~P~~~~~~~~~~~~~~~~~~i~~~g~~~~a~~~~~~~i~~l~~~~~~~gi~~a~~~~~s~~~g~~~~~  100 (306)
                      ..+..|+++++++|++++++.+.+++.+|++++||+|++++|+.++++++..+. ..+..+++.+.++++||++|+||+|
T Consensus        12 ~~~~~k~l~~la~P~i~~~l~~~l~~~vD~~~vG~~~~~alaav~la~~i~~~~-~~~~~gl~~g~~~liaq~~Ga~~~~   90 (455)
T COG0534          12 FKKILKLLLKLAIPIILGNLLQTLYGLVDTFMVGHLGAEALAAVGLANPIFFLI-IAIFIGLGTGTTVLVAQAIGAGDRK   90 (455)
T ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHH-HHHHHHHHHhHHHHHHHHHcCCchH
Confidence            566899999999999999999999999999999999999999999999999998 9999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHH-HHHHhHHHHHHHcCCCHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCCchHHHH
Q 021881          101 LLSLSLQRMILILFFAIIPIS-LLWLNLETVMIFMGQDKDITAMAATYTLYALPDLLTNTLLQPLRVFLRSQKVTKPMMW  179 (306)
Q Consensus       101 ~~~~~~~~~~~~~~~~~i~~~-~~~~~~~~il~~~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~g~~~~~~~  179 (306)
                      ++++..+++..++++++++.. +.+.+.++++.+++.++|+.+.+.+|+++..++.|+..++.++.+++|+.||+|.+++
T Consensus        91 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ll~~l~~~~~v~~~a~~Yl~i~~~~~~~~~~~~~~~~~lr~~G~~~~~m~  170 (455)
T COG0534          91 KAKRVLGQGLLLALLLGLLLAILLLFFAEPLLRLLGAPAEVLELAAEYLRIILLGAPFALLSFVLSGILRGLGDTKTPMY  170 (455)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCchhHH
Confidence            999999999999999997775 5699999999999998999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHhHHHHHhh-cC-CChhhhHHHHHHHHHHHHHHHhhhhhhhhHHhhhhhhhhhhheeeecccchHHHHHH
Q 021881          180 CTLVAVMFHVPLNYCLVMK-LK-LGVPGVAMASVVCNLNMLKIGFSGLWFGLLSAQAACAVSILYVVLVRTDWEAEAMKA  257 (306)
Q Consensus       180 ~~~i~~~~~i~l~~~li~~-~~-~G~~Ga~~a~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  257 (306)
                      +++++.++|+++|++|+++ ++ +|+.|+++||++++.+.+++....+.+.-..        ......+..+++++..++
T Consensus       171 ~~~~~~~lNivln~llI~g~~g~lGv~GAA~AT~ia~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~  242 (455)
T COG0534         171 ILLLGNLLNIVLNYLLIFGLFGGLGVAGAALATVIARWIGALLLLIYLLRKKRL--------LSLFKKKLLKPDRKLLKE  242 (455)
T ss_pred             HHHHHHHHHHHhhHHHHHhccccccchhHHHHHHHHHHHHHHHHHHHHHhcchh--------hhhhhhhccCCCHHHHHH
Confidence            9999999999999999998 47 9999999999999999998844443332100        000001111233333332


Q ss_pred             hhh-----------hHHHHHHHHhhcCCCchhhHHHHHHHHhhhhHHHHHhhhhhcCC
Q 021881          258 MKL-----------TSLEISTFNAGAGDTNEEEEEEESKGLLLYGICFRLLDAFFSGW  304 (306)
Q Consensus       258 ~~~-----------~~~~~~~~~~~~~~~~~~~~a~~~i~~~i~~~~~~~~~~~~~~~  304 (306)
                      ..+           ........+...++.|++++|++++..+++++.+|+.+|+++|+
T Consensus       243 i~~lG~p~~~~~~~~~~~~~~~~~~~~~~G~~~lAa~~i~~~i~~~~~~~~~gi~~a~  300 (455)
T COG0534         243 ILRLGLPIFLESLSESLGFLLLTLFVARLGTVALAAYGIALRIASFIFMPPFGIAQAV  300 (455)
T ss_pred             HHHhcccHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            221           22333344445578899999999999999999999999999875

>PRK10367 DNA-damage-inducible SOS response protein; Provisional

Probab=100.00  E-value=1.8e-32  Score=253.86  Aligned_cols=275  Identities=20%  Similarity=0.226  Sum_probs=226.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-ChhhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhcCCChh
Q 021881           22 VEELKELWGMALPMTGMNILVFIRAVVSVLFLGRL-GSLELAGGALSIGFTNITGYSVLVGLASGLEPVCSQAYGSKNWD  100 (306)
Q Consensus        22 ~~~~k~~l~~~~P~~~~~~~~~~~~~~~~~~i~~~-g~~~~a~~~~~~~i~~l~~~~~~~gi~~a~~~~~s~~~g~~~~~  100 (306)
                      +++.|+++++++|.+++++.+.+.+.+|+.+++++ |++++|+.+++.++.++. ..+..+++.+.++++||++|+||+|
T Consensus         5 ~~~~k~il~la~P~~~~~~~~~~~~~vd~~~vg~l~g~~alAa~~l~~~i~~~~-~~~~~~~~~g~~~lvsq~~Ga~~~~   83 (441)
T PRK10367          5 TSSDKALWRLALPMIFSNITVPLLGLVDTAVIGHLDSPVYLGGVAVGATATSFL-FMLLLFLRMSTTGLTAQAFGAKNPQ   83 (441)
T ss_pred             cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHhCCCCHH
Confidence            46789999999999999999999999999999998 677899999999999998 9999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHH-HHHhHHHHHHHcCCCHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCCchHHHH
Q 021881          101 LLSLSLQRMILILFFAIIPISL-LWLNLETVMIFMGQDKDITAMAATYTLYALPDLLTNTLLQPLRVFLRSQKVTKPMMW  179 (306)
Q Consensus       101 ~~~~~~~~~~~~~~~~~i~~~~-~~~~~~~il~~~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~g~~~~~~~  179 (306)
                      ++++..++++.++++++++..+ ...+.++++.+++.|+|+.+.+.+|+++..++.|+..+..++.+++|+.||+|.+++
T Consensus        84 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ll~~~g~~~~v~~~a~~Yl~i~~~~~~~~~~~~~~~~~lr~~G~~~~~~~  163 (441)
T PRK10367         84 ALARALVQPLLLALGAGALIALLRTPLIDLALHIVGGSEAVLEQARRFLEIRWLSAPASLANLVLLGWLLGVQYARAPVI  163 (441)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccchHHHH
Confidence            9999999999999999988865 577889999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHhHHHHHhhcCCChhhhHHHHHHHHHHHHHHHhhhhhhhhHHhhhhhhhhhhheeeecccchH---HHHH
Q 021881          180 CTLVAVMFHVPLNYCLVMKLKLGVPGVAMASVVCNLNMLKIGFSGLWFGLLSAQAACAVSILYVVLVRTDWEA---EAMK  256 (306)
Q Consensus       180 ~~~i~~~~~i~l~~~li~~~~~G~~Ga~~a~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~  256 (306)
                      .++++.++|+++++++++..++|+.|+++||++++.+.+++....+++....       ........+.+|++   +..+
T Consensus       164 ~~ii~~~vni~l~~~lI~~~~lGv~Gaa~At~is~~~~~i~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~il~  236 (441)
T PRK10367        164 LLVVGNILNIVLDLWLVMGLHMNVQGAALATVIAEYATLLIGLLMVRKVLKL-------RGISLEMLKTAWRGNFRRLLA  236 (441)
T ss_pred             HHHHHHHHHHHHHHHHHHHcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHhh-------ccccHHHhhhhhHHHHHHHHH
Confidence            9999999999999999998899999999999999999887743333221000       00000000111211   1111


Q ss_pred             Hh-----hh--hHHHHHHHHhhcCCCchhhHHHHHHHHhhhhHHHHHhhhhhcCC
Q 021881          257 AM-----KL--TSLEISTFNAGAGDTNEEEEEEESKGLLLYGICFRLLDAFFSGW  304 (306)
Q Consensus       257 ~~-----~~--~~~~~~~~~~~~~~~~~~~~a~~~i~~~i~~~~~~~~~~~~~~~  304 (306)
                      .-     +.  ........+...++.|++++|+++++.++++++||+..|+++|+
T Consensus       237 ig~P~~~~~~~~~~~~~~~~~~~~~~G~~alAa~~I~~~i~~~~~~~~~gl~~a~  291 (441)
T PRK10367        237 LNRDIMLRSLLLQLCFGAITVLGARLGSDIIAVNAVLMTLLTFTAYALDGFAYAV  291 (441)
T ss_pred             hCchHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Confidence            00     00  11122223333467899999999999999999999999999875

>PRK00187 multidrug efflux protein NorA; Provisional

Probab=100.00  E-value=3.7e-32  Score=253.65  Aligned_cols=276  Identities=17%  Similarity=0.190  Sum_probs=225.1

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccChhhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhcCCCh
Q 021881           20 QVVEELKELWGMALPMTGMNILVFIRAVVSVLFLGRLGSLELAGGALSIGFTNITGYSVLVGLASGLEPVCSQAYGSKNW   99 (306)
Q Consensus        20 ~~~~~~k~~l~~~~P~~~~~~~~~~~~~~~~~~i~~~g~~~~a~~~~~~~i~~l~~~~~~~gi~~a~~~~~s~~~g~~~~   99 (306)
                      ++++++|+++++++|.+++++.+.+...+|+.+++++|++++|+++++.++.++. ..+..|++++.++++||++|++|+
T Consensus         4 ~~~~~~k~il~~a~P~~~~~~~~~~~~~~d~~~v~~lg~~alAa~~i~~~i~~~~-~~~~~gl~~~~~~i~aq~~Ga~~~   82 (464)
T PRK00187          4 PPTTELKAILRLAGPLIASQLAHMLMVFTDTLMMGRLGPEALAGGGLGAASYSFV-SIFCVGVIAAVGTLVAIRHGAGDI   82 (464)
T ss_pred             CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHhcCCCh
Confidence            4667899999999999999999999999999999999999999999999999998 899999999999999999999999


Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHcCCCHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCCchHHHH
Q 021881          100 DLLSLSLQRMILILFFAIIPISLLWLNLETVMIFMGQDKDITAMAATYTLYALPDLLTNTLLQPLRVFLRSQKVTKPMMW  179 (306)
Q Consensus       100 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~il~~~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~g~~~~~~~  179 (306)
                      |++++.++++..+.++++++..++..+.++++.+++.|||+.+.+.+|+++..++.|+..+...+++++|+.||++.+++
T Consensus        83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~l~~~~~ev~~~~~~Yl~i~~~~~~~~~l~~~~~~~l~~~g~~~~~~~  162 (464)
T PRK00187         83 EGATRLAQAGLWLAWLLALVAALLLWNLKPLLLLFGQAPQNVDAAMQFLHLLPFALPGYLSFMALRGFTSALGRAGPVMV  162 (464)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcHHHHH
Confidence            99999999999999999988866555779999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHhHHHHHhhc----CCChhhhHHHHHHHHHHHHHHHhhhhhhhhHHhhhhhhhhhhheeee-cccchHHH
Q 021881          180 CTLVAVMFHVPLNYCLVMKL----KLGVPGVAMASVVCNLNMLKIGFSGLWFGLLSAQAACAVSILYVVLV-RTDWEAEA  254 (306)
Q Consensus       180 ~~~i~~~~~i~l~~~li~~~----~~G~~Ga~~a~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~  254 (306)
                      .++++.++|++++|+|+++.    ++|+.|+++|+++++....+.-...+++.-.        ...+..++ ..+++++.
T Consensus       163 ~~~~~~~~ni~~~~~lIfg~~g~p~~Gv~Gaalat~i~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~  234 (464)
T PRK00187        163 ISLAGAVANLLLNYALIEGWFGLPKLGLMGIGLVTALVSNGMALALALYIRRHPA--------YAAYPLRKGLSRPSRAA  234 (464)
T ss_pred             HHHHHHHHHHHHHHHHHcCCCCCccccccchHHHHHHHHHHHHHHHHHHHHhcch--------hhhhhhhccccCCCHHH
Confidence            99999999999999999864    5899999999999988776542111111000        00000000 01112222


Q ss_pred             HHHhhh-----------hHHHHHHHHhhcCCCchhhHHHHHHHHhhhhHHHHHhhhhhcCC
Q 021881          255 MKAMKL-----------TSLEISTFNAGAGDTNEEEEEEESKGLLLYGICFRLLDAFFSGW  304 (306)
Q Consensus       255 ~~~~~~-----------~~~~~~~~~~~~~~~~~~~~a~~~i~~~i~~~~~~~~~~~~~~~  304 (306)
                      .|+..+           ............++.|++++|+++++.++..+++++..+++.|.
T Consensus       235 ~k~il~lg~P~~~~~~~~~~~~~i~~~~i~~~G~~alAa~~i~~~i~~l~~~~~~gi~~a~  295 (464)
T PRK00187        235 LRELWRLGLPIGGTYAVEVGLFTFAALCMGALGSTQLAAHQIALQIVSVAFMVPVGLSYAV  295 (464)
T ss_pred             HHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            222111           01111112223356899999999999999999999999998875

>PRK10189 MATE family multidrug exporter; Provisional

Probab=100.00  E-value=1e-31  Score=251.12  Aligned_cols=274  Identities=14%  Similarity=0.112  Sum_probs=225.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccChhhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhcCCChhHH
Q 021881           23 EELKELWGMALPMTGMNILVFIRAVVSVLFLGRLGSLELAGGALSIGFTNITGYSVLVGLASGLEPVCSQAYGSKNWDLL  102 (306)
Q Consensus        23 ~~~k~~l~~~~P~~~~~~~~~~~~~~~~~~i~~~g~~~~a~~~~~~~i~~l~~~~~~~gi~~a~~~~~s~~~g~~~~~~~  102 (306)
                      +.+|+++++++|.+++++.+.+...+|+.+++++|++++|+++++.++..+. ..+..|++++.++++||++|++|+|++
T Consensus        26 ~~~k~il~la~P~~~~~~~~~~~~~vd~~~vg~lG~~alAA~~i~~~i~~~~-~~~~~gl~~g~~~lvsq~~Ga~~~~~~  104 (478)
T PRK10189         26 LFWREITPLAVPIFIENLCVLLMGVLSTFLVSWLGKEAMAGVGLADSFNMVI-MAFFAAIDLGTTVVVAFSLGKRDRRRA  104 (478)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHhcCCCHHHH
Confidence            4699999999999999999999999999999999999999999999999987 999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHH-HHHhHHHHHHHcC--CCHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCCchHHHH
Q 021881          103 SLSLQRMILILFFAIIPISL-LWLNLETVMIFMG--QDKDITAMAATYTLYALPDLLTNTLLQPLRVFLRSQKVTKPMMW  179 (306)
Q Consensus       103 ~~~~~~~~~~~~~~~i~~~~-~~~~~~~il~~~~--~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~g~~~~~~~  179 (306)
                      ++..+++..+++.++++..+ .+.++++++.++.  .|+|+.+.+.+|+++..++.|+..+..++.+++|+.||++.+++
T Consensus       105 ~~~~~~~l~~~~~~~~~~~~l~~~~~~~ll~l~~~~~~~~v~~~a~~Yl~i~~~~~~~~~~~~~~~~~lr~~G~~~~~~~  184 (478)
T PRK10189        105 RAAARQSLVIMTLFAVLLAVLIHFFGEQIIDLVAGDATPEVKALALTYLELTVWSYPAAAITLIGSGALRGAGNTKIPLL  184 (478)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchHHhHH
Confidence            99999999999999998865 5788899999994  69999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHhHHHHHhhc----CCChhhhHHHHHHHHHHHHHHHhhhhhhhhHHhhhhhhhhhhheeeec--ccchHH
Q 021881          180 CTLVAVMFHVPLNYCLVMKL----KLGVPGVAMASVVCNLNMLKIGFSGLWFGLLSAQAACAVSILYVVLVR--TDWEAE  253 (306)
Q Consensus       180 ~~~i~~~~~i~l~~~li~~~----~~G~~Ga~~a~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~  253 (306)
                      +++++.++|++++++++++.    ++|+.|+++|+++++.+..++..+.+++...        ......+++  .+++.+
T Consensus       185 i~~~~~~~ni~l~~~li~g~~~~~~lGv~Gaa~At~is~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~  256 (478)
T PRK10189        185 INGGMNILNIIISSILIYGLFSWQGLGFVGAGLGLTISRYIGAVAIIWVLMIGFN--------PALRISLKSYFKPLNFA  256 (478)
T ss_pred             HHHHHHHHHHHHhHHHHhcCCCCCccchHHHHHHHHHHHHHHHHHHHHHHHhccC--------ccceeeeccccccCCHH
Confidence            99999999999999999764    7899999999999999987663222221000        000000000  011222


Q ss_pred             HHHHhhh----hHHH-----H--HHHHhhcCCCchhhHHHHHHHHhhhhHHHHHhhhhhcCCC
Q 021881          254 AMKAMKL----TSLE-----I--STFNAGAGDTNEEEEEEESKGLLLYGICFRLLDAFFSGWG  305 (306)
Q Consensus       254 ~~~~~~~----~~~~-----~--~~~~~~~~~~~~~~~a~~~i~~~i~~~~~~~~~~~~~~~~  305 (306)
                      ..++.-+    ...|     .  ...+...++.|++++|+++++.|++++.+++..|++.|+.
T Consensus       257 ~~~~il~iG~P~~~~~~~~~~~~~~~~~~~~~~G~~~~Aa~~I~~~i~~~~~~~~~gi~~A~~  319 (478)
T PRK10189        257 IIWEVMGIGIPASIESVLFNGGKLLTQMFVAGMGTSVIAGNFIAFSIAALINLPGNALGSAST  319 (478)
T ss_pred             HHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            2222111    1111     1  1122234567999999999999999999999999988753

>PRK09575 vmrA multidrug efflux pump VmrA; Reviewed

Probab=100.00  E-value=4.3e-30  Score=239.19  Aligned_cols=275  Identities=15%  Similarity=0.193  Sum_probs=226.3

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-cChhhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhcCCCh
Q 021881           21 VVEELKELWGMALPMTGMNILVFIRAVVSVLFLGR-LGSLELAGGALSIGFTNITGYSVLVGLASGLEPVCSQAYGSKNW   99 (306)
Q Consensus        21 ~~~~~k~~l~~~~P~~~~~~~~~~~~~~~~~~i~~-~g~~~~a~~~~~~~i~~l~~~~~~~gi~~a~~~~~s~~~g~~~~   99 (306)
                      +++..|++++++.|.+++++.+.+++.+|+.++++ .|+++++++++++++.++. ..+..+++.+.+++++|++|+||+
T Consensus         7 ~~~~~k~i~~l~~P~~~~~l~~~l~~~~d~~~lg~~~g~~~laa~~~~~~~~~~~-~~~~~~~~~g~~~lvsq~~Ga~~~   85 (453)
T PRK09575          7 NQSIYRTFWRYTIPSIAAMLVNGLYQIVDGIFIGHYVGAEGLAGINMAWPVIGII-LGIGLMVGMGTGSLLSIKRGEGDL   85 (453)
T ss_pred             cCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHH-HHHHHHHhccHHHHHHHHhcCCCH
Confidence            34678999999999999999999999999999999 5999999999999999987 889999999999999999999999


Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHH-HHHhHHHHHHHcCCCHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCCchHHH
Q 021881          100 DLLSLSLQRMILILFFAIIPISL-LWLNLETVMIFMGQDKDITAMAATYTLYALPDLLTNTLLQPLRVFLRSQKVTKPMM  178 (306)
Q Consensus       100 ~~~~~~~~~~~~~~~~~~i~~~~-~~~~~~~il~~~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~g~~~~~~  178 (306)
                      |++++..+++..++++++++..+ .+.+.++++.+++.|+++.+.+.+|+++..++.|+..+.....+++|+.||++.++
T Consensus        86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~l~~~~~~~~~~~~~yl~i~~~~~~~~~l~~~~~~~l~~~g~~~~~~  165 (453)
T PRK09575         86 EKAKRILTTGLLLLLLLGPIVSVILFLFADDFLRAQGAEGRTLELALQYIQVLIWGCLFTLGAIALPFLLRNDESPNLAT  165 (453)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChHHHH
Confidence            99999999999999999988865 68889999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHhHHHHHhhcCCChhhhHHHHHHHHHHHHHHHhhhhhhhhHHhhhhhhhhhhheeeecccchHHHHHHh
Q 021881          179 WCTLVAVMFHVPLNYCLVMKLKLGVPGVAMASVVCNLNMLKIGFSGLWFGLLSAQAACAVSILYVVLVRTDWEAEAMKAM  258 (306)
Q Consensus       179 ~~~~i~~~~~i~l~~~li~~~~~G~~Ga~~a~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  258 (306)
                      +.++.+.++|+++++++++..++|+.|+++|+++++.+.+++....++++-         .......++.+++++..++.
T Consensus       166 ~~~~~~~~~ni~l~~~li~~~~~Gi~Gaa~At~is~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~i  236 (453)
T PRK09575        166 GLMVIGALINIVLDYLFIGWLDWGLTGAAIATALAQLVVTVLGLGYFFSSR---------ANIRLTLKELRFNWSLAPKI  236 (453)
T ss_pred             HHHHHHHHHHHHhhHHHHHhCCchhHHHHHHHHHHHHHHHHHHHHHHHCCC---------ceeEEeeccCCcCHHHHHHH
Confidence            999999999999999999988999999999999999999876332222110         00000000111222222221


Q ss_pred             hh----h-------HHHHHHHHhhcCCCch-hhHHHHHHHHhhhhHHHHHhhhhhcCCC
Q 021881          259 KL----T-------SLEISTFNAGAGDTNE-EEEEEESKGLLLYGICFRLLDAFFSGWG  305 (306)
Q Consensus       259 ~~----~-------~~~~~~~~~~~~~~~~-~~~a~~~i~~~i~~~~~~~~~~~~~~~~  305 (306)
                      -+    .       .......+....++|+ +++|+++++.++..+++++..|++.|..
T Consensus       237 l~ig~P~~~~~~~~~~~~~~~~~~~~~~g~~~~lAa~~i~~~i~~~~~~~~~gi~~a~~  295 (453)
T PRK09575        237 VLLGSSSFFMYLYGSFVVALHNRLFMEYGSALTVGAYAIVGYLMVLYYLVAEGIAEGMQ  295 (453)
T ss_pred             HHhChhHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHHHHhhH
Confidence            11    1       1111122222345675 6899999999999999999999998763

>PRK01766 multidrug efflux protein; Reviewed

Probab=99.97  E-value=5.4e-29  Score=232.28  Aligned_cols=278  Identities=17%  Similarity=0.190  Sum_probs=225.7

Q ss_pred             chhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccChhhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhcCC
Q 021881           18 FSQVVEELKELWGMALPMTGMNILVFIRAVVSVLFLGRLGSLELAGGALSIGFTNITGYSVLVGLASGLEPVCSQAYGSK   97 (306)
Q Consensus        18 ~~~~~~~~k~~l~~~~P~~~~~~~~~~~~~~~~~~i~~~g~~~~a~~~~~~~i~~l~~~~~~~gi~~a~~~~~s~~~g~~   97 (306)
                      .++.++.+|+++++++|.+++++...+...+|+.+++++|++++++++++.++..+. ..+..|++.+..|.+||++|++
T Consensus         4 ~~~~~~~~~~il~~~~P~~~~~~~~~~~~~~d~~~i~~~g~~~laa~~~~~~~~~~~-~~~~~g~~~a~~~~vs~~~g~~   82 (456)
T PRK01766          4 TQKYKSEARQLLALALPILLAQVAQTAMGFVDTVMAGGVSATDLAAVAIGTSIWLPV-ILFGHGLLLALTPIVAQLNGAG   82 (456)
T ss_pred             cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHhcCC
Confidence            345677899999999999999999999999999999999999999999999998877 8889999999999999999999


Q ss_pred             ChhHHHHHHHHHHHHHHHHHHHHHH-HHHhHHHHHHHcCCCHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCCchH
Q 021881           98 NWDLLSLSLQRMILILFFAIIPISL-LWLNLETVMIFMGQDKDITAMAATYTLYALPDLLTNTLLQPLRVFLRSQKVTKP  176 (306)
Q Consensus        98 ~~~~~~~~~~~~~~~~~~~~i~~~~-~~~~~~~il~~~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~g~~~~  176 (306)
                      |+|++++..++++.+.+.++++..+ ++.+.++++.+++.|+++.+.+..|+++.+++.|+..+..++++++++.||++.
T Consensus        83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~yl~i~~~~~~~~~~~~~~~~~l~~~g~~~~  162 (456)
T PRK01766         83 RRERIAHQVRQGLWLALFLSVLIMLVLYNAVPPILNMMNLEPEVADIAVGYLHALLWGIPAYLLYQVLRSFIDGLGKTKP  162 (456)
T ss_pred             ChHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChH
Confidence            9999999999999999999988865 577788999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHhHHHHHhh----cCCChhhhHHHHHHHHHHHHHHHhhhhhhhhHHhhhhhhhhhhheeeec-ccch
Q 021881          177 MMWCTLVAVMFHVPLNYCLVMK----LKLGVPGVAMASVVCNLNMLKIGFSGLWFGLLSAQAACAVSILYVVLVR-TDWE  251 (306)
Q Consensus       177 ~~~~~~i~~~~~i~l~~~li~~----~~~G~~Ga~~a~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~  251 (306)
                      +++.++++.++|+++++++++.    .++|+.|+++||.+++.+..++....+++.-.        ........+ .+.+
T Consensus       163 ~~~~~~i~~ivni~l~~~li~~~~~~~~~Gv~Gaa~at~is~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~  234 (456)
T PRK01766        163 TMVIGFLGLLINIPLNYIFIYGKFGFPELGGVGCGVATAIVYWVMFLAMLIYIKRARR--------FRDFRLFKGLYKPD  234 (456)
T ss_pred             HHHHHHHHHHHHHHHHHHHHcCCCCCcccccccHHHHHHHHHHHHHHHHHHHHHhChh--------hhHHHhhccccCCC
Confidence            9999999999999999999864    25899999999999999998773332221100        000000000 0111


Q ss_pred             HHHHHHhhh-----------hHHHHHHHHhhcCCCchhhHHHHHHHHhhhhHHHHHhhhhhcCC
Q 021881          252 AEAMKAMKL-----------TSLEISTFNAGAGDTNEEEEEEESKGLLLYGICFRLLDAFFSGW  304 (306)
Q Consensus       252 ~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~a~~~i~~~i~~~~~~~~~~~~~~~  304 (306)
                      ++..|+.-.           ............+..|++++|+++++.++.++++++..|+++|.
T Consensus       235 ~~~~k~il~l~~P~~~~~~~~~~~~~~~~~~~~~~G~~~lAa~~i~~~i~~~~~~~~~gl~~a~  298 (456)
T PRK01766        235 WAVIKRLLKLGLPIGLAIFFEVSLFAVVTLLVSPLGTVTVAAHQIALNFSSLLFMLPLSLAMAL  298 (456)
T ss_pred             HHHHHHHHHccchHHHHHHHHHHHHHHHHHHHHHcChHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            222221110           01111122222345789999999999999999999999998764

>PRK00187 multidrug efflux protein NorA; Provisional

Probab=99.96  E-value=1.3e-26  Score=216.43  Aligned_cols=201  Identities=20%  Similarity=0.222  Sum_probs=189.1

Q ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccChhhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhcCCC
Q 021881           19 SQVVEELKELWGMALPMTGMNILVFIRAVVSVLFLGRLGSLELAGGALSIGFTNITGYSVLVGLASGLEPVCSQAYGSKN   98 (306)
Q Consensus        19 ~~~~~~~k~~l~~~~P~~~~~~~~~~~~~~~~~~i~~~g~~~~a~~~~~~~i~~l~~~~~~~gi~~a~~~~~s~~~g~~~   98 (306)
                      +.+++.+|+++|+++|.+++++.+.....+|+.+++++|++++|+++++.++.++. ..+..|++++.+++++|++|++|
T Consensus       229 ~~~~~~~k~il~lg~P~~~~~~~~~~~~~i~~~~i~~~G~~alAa~~i~~~i~~l~-~~~~~gi~~a~~~lvgq~~Ga~~  307 (464)
T PRK00187        229 RPSRAALRELWRLGLPIGGTYAVEVGLFTFAALCMGALGSTQLAAHQIALQIVSVA-FMVPVGLSYAVTMRVGQHYGAGR  307 (464)
T ss_pred             CCCHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHcCCC
Confidence            45678899999999999999999999999999999999999999999999999998 99999999999999999999999


Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHH-HHHhHHHHHHHcCC--CH---HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHcC
Q 021881           99 WDLLSLSLQRMILILFFAIIPISL-LWLNLETVMIFMGQ--DK---DITAMAATYTLYALPDLLTNTLLQPLRVFLRSQK  172 (306)
Q Consensus        99 ~~~~~~~~~~~~~~~~~~~i~~~~-~~~~~~~il~~~~~--~~---~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~g  172 (306)
                      +|++++..+.+..++...+++..+ ++.+++++.+++++  |+   |+.+.+..|+++.+++.++.+++.++.+++||.|
T Consensus       308 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~f~~~i~~~ft~~~~~~~~~v~~~~~~~l~i~~~~~~~~~~~~v~~~~lrg~G  387 (464)
T PRK00187        308 LLEARRAGRVGIGFGAVVMLLFAGLFWLLPEAIIGLFLDRNDPAFAEIVQLAVSLLAVAAWFELFDGTQTIAMGAIRGLK  387 (464)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhHhccC
Confidence            999999999999999999988865 68899999999963  44   7899999999999999999999999999999999


Q ss_pred             CchHHHHHHHHHH-HHHHHhHHHHHhhcCCChhhhHHHHHHHHHHHHHH
Q 021881          173 VTKPMMWCTLVAV-MFHVPLNYCLVMKLKLGVPGVAMASVVCNLNMLKI  220 (306)
Q Consensus       173 ~~~~~~~~~~i~~-~~~i~l~~~li~~~~~G~~Ga~~a~~i~~~~~~~~  220 (306)
                      |+|.++++++++. ++++|++|++.+.+++|+.|+|+++.+++.+..+.
T Consensus       388 ~~~~~~~~~~~~~~~~~ipl~~ll~~~~~~g~~Gvw~~~~i~~~~~~~~  436 (464)
T PRK00187        388 DARTTFLIGLACYWLVGAPLAWLLAFTLGWGAVGVWWGLALGLACAAVA  436 (464)
T ss_pred             ccHHHHHHHHHHHHHHHHHHHHHHHhccCCCceeeHHHHHHHHHHHHHH
Confidence            9999999999999 99999999999887899999999999999987754

>COG0534 NorM Na+-driven multidrug efflux pump [Defense mechanisms]

Probab=99.95  E-value=2.7e-26  Score=213.03  Aligned_cols=204  Identities=20%  Similarity=0.256  Sum_probs=193.7

Q ss_pred             CCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccChhhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHh
Q 021881           15 LPSFSQVVEELKELWGMALPMTGMNILVFIRAVVSVLFLGRLGSLELAGGALSIGFTNITGYSVLVGLASGLEPVCSQAY   94 (306)
Q Consensus        15 ~~~~~~~~~~~k~~l~~~~P~~~~~~~~~~~~~~~~~~i~~~g~~~~a~~~~~~~i~~l~~~~~~~gi~~a~~~~~s~~~   94 (306)
                      ++..+++++.+|+++++|+|.+++++.......+.+.+++++|++++|+++++.++.++. +.+..|++++.+++++|++
T Consensus       230 ~~~~~~~~~~~~~i~~lG~p~~~~~~~~~~~~~~~~~~~~~~G~~~lAa~~i~~~i~~~~-~~~~~gi~~a~~~lvG~~~  308 (455)
T COG0534         230 KKLLKPDRKLLKEILRLGLPIFLESLSESLGFLLLTLFVARLGTVALAAYGIALRIASFI-FMPPFGIAQAVTILVGQNL  308 (455)
T ss_pred             hhccCCCHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHh
Confidence            334467889999999999999999999999999999999999999999999999999998 9999999999999999999


Q ss_pred             cCCChhHHHHHHHHHHHHHHHHHHHHHH-HHHhHHHHHHHcCCCHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCC
Q 021881           95 GSKNWDLLSLSLQRMILILFFAIIPISL-LWLNLETVMIFMGQDKDITAMAATYTLYALPDLLTNTLLQPLRVFLRSQKV  173 (306)
Q Consensus        95 g~~~~~~~~~~~~~~~~~~~~~~i~~~~-~~~~~~~il~~~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~g~  173 (306)
                      |++|+|++++..+.+..++..+++...+ ++.+++++.++|++|+|+.+.+..++++.++..++++.+.+..+.+||.||
T Consensus       309 Ga~~~~~a~~~~~~~~~~~~~~~~~~~~i~~~f~~~i~~lF~~~~~v~~~~~~~l~i~~~~~~~~~~~~v~~g~lrg~g~  388 (455)
T COG0534         309 GAGNYKRARRAARLALKLSLLIALLIALLLLLFREPIISLFTTDPEVIALAVILLLIAALFQPFDGIQFVLSGVLRGAGD  388 (455)
T ss_pred             CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence            9999999999999999999999988854 699999999999999999999999999999999999999999999999999


Q ss_pred             chHHHHHHHHHH-HHHHHhHHHHHhhcCCChhhhHHHHHHHHHHHHHH
Q 021881          174 TKPMMWCTLVAV-MFHVPLNYCLVMKLKLGVPGVAMASVVCNLNMLKI  220 (306)
Q Consensus       174 ~~~~~~~~~i~~-~~~i~l~~~li~~~~~G~~Ga~~a~~i~~~~~~~~  220 (306)
                      +|.+++.++++. ++.+|+.|++.+.. +|..|.|++...++.+..++
T Consensus       389 ~~~~~~~~~~~~~~~~lp~~~~l~~~~-~g~~Gvw~~~~~~~~~~~~~  435 (455)
T COG0534         389 AKIPFIISLLSYWGFRLPLAYLLGFFF-LGLAGVWIGFPLSLILRAIL  435 (455)
T ss_pred             cHHHHHHHHHHHHHHHHhHHHHHhhhc-ccchHHHHHHHHHHHHHHHH
Confidence            999999999999 88999999999865 99999999999999988855

>PRK10189 MATE family multidrug exporter; Provisional

Probab=99.95  E-value=2.5e-25  Score=208.13  Aligned_cols=200  Identities=15%  Similarity=0.153  Sum_probs=189.5

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccChhhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhcCCCh
Q 021881           20 QVVEELKELWGMALPMTGMNILVFIRAVVSVLFLGRLGSLELAGGALSIGFTNITGYSVLVGLASGLEPVCSQAYGSKNW   99 (306)
Q Consensus        20 ~~~~~~k~~l~~~~P~~~~~~~~~~~~~~~~~~i~~~g~~~~a~~~~~~~i~~l~~~~~~~gi~~a~~~~~s~~~g~~~~   99 (306)
                      .+++.+|+++++|.|..+++....+...+.+.+++++|++++|+++++.++.++. +.+..|++++.+++++|++|++|+
T Consensus       253 ~~~~~~~~il~iG~P~~~~~~~~~~~~~~~~~~~~~~G~~~~Aa~~I~~~i~~~~-~~~~~gi~~A~~~lvg~~~Ga~~~  331 (478)
T PRK10189        253 LNFAIIWEVMGIGIPASIESVLFNGGKLLTQMFVAGMGTSVIAGNFIAFSIAALI-NLPGNALGSASTIITGTRLGKGQI  331 (478)
T ss_pred             CCHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHhCCCCH
Confidence            4678999999999999999999999999999999999999999999999999998 999999999999999999999999


Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHH-HHHhHHHHHHHcCCCHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCCchHHH
Q 021881          100 DLLSLSLQRMILILFFAIIPISL-LWLNLETVMIFMGQDKDITAMAATYTLYALPDLLTNTLLQPLRVFLRSQKVTKPMM  178 (306)
Q Consensus       100 ~~~~~~~~~~~~~~~~~~i~~~~-~~~~~~~il~~~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~g~~~~~~  178 (306)
                      |++|+..+.+..++.+.++...+ ++.+++++.++|++|+|+.+.+..++++.++..++++++.+..+.+||.||++.++
T Consensus       332 ~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~lFt~d~~v~~~~~~~l~~~~~~~~~~~~~~~~~g~lrg~G~t~~~~  411 (478)
T PRK10189        332 AQAERQLRHVFWLSTLGLTAIAWLSAPFAGLLASFYTQDPDVKHVVKILIWLNALFMPIWAASWVLPAGLKGARDARYAM  411 (478)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhcCCCchHHH
Confidence            99999999999999999888865 68889999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHH-HHHHHhHHHHHhhcCCChhhhHHHHHHHHHHHHHH
Q 021881          179 WCTLVAV-MFHVPLNYCLVMKLKLGVPGVAMASVVCNLNMLKI  220 (306)
Q Consensus       179 ~~~~i~~-~~~i~l~~~li~~~~~G~~Ga~~a~~i~~~~~~~~  220 (306)
                      ++++++. ++.+|+.+++....++|+.|+|++..+++.+..++
T Consensus       412 ~i~~~~~~~v~ip~~~ll~~~~~~g~~Gvw~~~~~~~~~~~~~  454 (478)
T PRK10189        412 WVSMLGMWGCRVVAGYILGIMLGFGVVGVWMGMFLDWAVRGVL  454 (478)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHH
Confidence            9999998 89999999988777899999999999999887754

>PRK01766 multidrug efflux protein; Reviewed

Probab=99.94  E-value=2.7e-25  Score=207.43  Aligned_cols=201  Identities=17%  Similarity=0.199  Sum_probs=191.4

Q ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccChhhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhcCCC
Q 021881           19 SQVVEELKELWGMALPMTGMNILVFIRAVVSVLFLGRLGSLELAGGALSIGFTNITGYSVLVGLASGLEPVCSQAYGSKN   98 (306)
Q Consensus        19 ~~~~~~~k~~l~~~~P~~~~~~~~~~~~~~~~~~i~~~g~~~~a~~~~~~~i~~l~~~~~~~gi~~a~~~~~s~~~g~~~   98 (306)
                      +++++.+|+++++++|.++++..+.....+++.+++++|++++|+++++.++.++. ..+..|++.+.++.++|++|++|
T Consensus       232 ~~~~~~~k~il~l~~P~~~~~~~~~~~~~~~~~~~~~~G~~~lAa~~i~~~i~~~~-~~~~~gl~~a~~~~v~~~~Ga~~  310 (456)
T PRK01766        232 KPDWAVIKRLLKLGLPIGLAIFFEVSLFAVVTLLVSPLGTVTVAAHQIALNFSSLL-FMLPLSLAMALTIRVGFELGAGR  310 (456)
T ss_pred             CCCHHHHHHHHHccchHHHHHHHHHHHHHHHHHHHHHcChHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHhcCCC
Confidence            35678899999999999999999999999999999999999999999999999998 99999999999999999999999


Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHH-HHHhHHHHHHHcCCCHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCCchHH
Q 021881           99 WDLLSLSLQRMILILFFAIIPISL-LWLNLETVMIFMGQDKDITAMAATYTLYALPDLLTNTLLQPLRVFLRSQKVTKPM  177 (306)
Q Consensus        99 ~~~~~~~~~~~~~~~~~~~i~~~~-~~~~~~~il~~~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~g~~~~~  177 (306)
                      +|++++..+.+..++..++++..+ ++.+.+++.++|++|+|+.+.+..++++..++.++.+++.+..+++||.||++.+
T Consensus       311 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~lf~~d~~v~~~~~~~l~~~~~~~~~~~~~~~~~~~l~g~g~~~~~  390 (456)
T PRK01766        311 TLDARQYAYIGLAVGLGMALLTAIFLVLFREQIALLYTDDPEVVALASHLLLFAALFQFSDAIQVIGSGALRGYKDTRVI  390 (456)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhccCccHHH
Confidence            999999999999999999998854 6889999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHH-HHHHHhHHHHHhhcCCChhhhHHHHHHHHHHHHHH
Q 021881          178 MWCTLVAV-MFHVPLNYCLVMKLKLGVPGVAMASVVCNLNMLKI  220 (306)
Q Consensus       178 ~~~~~i~~-~~~i~l~~~li~~~~~G~~Ga~~a~~i~~~~~~~~  220 (306)
                      +++++++. ++++|+.+++.+..++|+.|+++++.+++.+..++
T Consensus       391 ~~~~~~~~~~~~i~~~~~l~~~~~~G~~G~~~~~~~~~~~~~~~  434 (456)
T PRK01766        391 FFITFIAYWVLGLPLGYILALTDPMGPFGFWIGLIIGLTAAAIL  434 (456)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhccCCCceehHHHHHHHHHHHHHH
Confidence            99999998 89999999998877899999999999999998865

>PRK09575 vmrA multidrug efflux pump VmrA; Reviewed

Probab=99.94  E-value=1.4e-24  Score=202.25  Aligned_cols=201  Identities=17%  Similarity=0.206  Sum_probs=187.2

Q ss_pred             CchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCh-hhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhc
Q 021881           17 SFSQVVEELKELWGMALPMTGMNILVFIRAVVSVLFLGRLGS-LELAGGALSIGFTNITGYSVLVGLASGLEPVCSQAYG   95 (306)
Q Consensus        17 ~~~~~~~~~k~~l~~~~P~~~~~~~~~~~~~~~~~~i~~~g~-~~~a~~~~~~~i~~l~~~~~~~gi~~a~~~~~s~~~g   95 (306)
                      .++.+++..|+++++|.|..+++....+...+.+.+++++|+ +++|+++++.++.++. ..+..|++++.+|++||++|
T Consensus       225 ~~~~~~~~~~~il~ig~P~~~~~~~~~~~~~~~~~~~~~~g~~~~lAa~~i~~~i~~~~-~~~~~gi~~a~~~lvg~~~G  303 (453)
T PRK09575        225 ELRFNWSLAPKIVLLGSSSFFMYLYGSFVVALHNRLFMEYGSALTVGAYAIVGYLMVLY-YLVAEGIAEGMQPPVSYYFG  303 (453)
T ss_pred             cCCcCHHHHHHHHHhChhHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHH-HHHHHHHHHhhHHHHHHHhc
Confidence            345677889999999999999999999999999999999986 5899999999999998 99999999999999999999


Q ss_pred             CCChhHHHHHHHHHHHHHHHHHHHHHH-HHHhHHHHHHHcCC-CHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCC
Q 021881           96 SKNWDLLSLSLQRMILILFFAIIPISL-LWLNLETVMIFMGQ-DKDITAMAATYTLYALPDLLTNTLLQPLRVFLRSQKV  173 (306)
Q Consensus        96 ~~~~~~~~~~~~~~~~~~~~~~i~~~~-~~~~~~~il~~~~~-~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~g~  173 (306)
                      +||+|++++..+.+..+++..+++..+ ++.+++++..+|++ |||+.+.+..|+++.+++.++++++.+..+++||.||
T Consensus       304 a~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~~~i~~lf~~~~~~v~~~~~~~l~i~~~~~~~~~~~~~~~~~~~~~g~  383 (453)
T PRK09575        304 ARQYDNIKKLLKLAMKVTVLAGIAWVLLLNLFPETMIALFNSGDSELIAETIVGIRLHLFAMFLDGFLVLASAYFMAVNQ  383 (453)
T ss_pred             CCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhHcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence            999999999999999999999999865 68899999999995 7899999999999999999999999999999999999


Q ss_pred             chHHHHHHHHHHHHHHHhHHHHHhhcCCChhhhHHHHHHHHHHHHHH
Q 021881          174 TKPMMWCTLVAVMFHVPLNYCLVMKLKLGVPGVAMASVVCNLNMLKI  220 (306)
Q Consensus       174 ~~~~~~~~~i~~~~~i~l~~~li~~~~~G~~Ga~~a~~i~~~~~~~~  220 (306)
                      ++.+++.+..+.++++|+.+++..  .+|+.|+|+++.+++.+..++
T Consensus       384 ~~~~~~~~~~~~~v~ip~~~ll~~--~~G~~Gvw~a~~~~~~~~~~~  428 (453)
T PRK09575        384 GGKALFISIGNMLIQLPFLFILPK--WLGVDGVWLAMPLSNIALSLV  428 (453)
T ss_pred             cHHHHHHHHHhHHHHHHHHHHHHH--HHCcchHhhHHHHHHHHHHHH
Confidence            999999999888889999999865  479999999999999988765

>TIGR00797 matE putative efflux protein, MATE family

Probab=99.94  E-value=1.1e-23  Score=189.26  Aligned_cols=259  Identities=24%  Similarity=0.297  Sum_probs=211.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHhccChhhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhcCCChhHHHHHHHHHHHHH
Q 021881           34 PMTGMNILVFIRAVVSVLFLGRLGSLELAGGALSIGFTNITGYSVLVGLASGLEPVCSQAYGSKNWDLLSLSLQRMILIL  113 (306)
Q Consensus        34 P~~~~~~~~~~~~~~~~~~i~~~g~~~~a~~~~~~~i~~l~~~~~~~gi~~a~~~~~s~~~g~~~~~~~~~~~~~~~~~~  113 (306)
                      |.+++++...+...+|+.+++++|++++++++++.++.++. ..+..+++++..|.++|++|++|+|++++..++...+.
T Consensus         1 p~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~a~~i~~~~-~~~~~~i~~~~~~~~s~~~g~~~~~~~~~~~~~~~~~~   79 (342)
T TIGR00797         1 PAILANILQPLLGLVDTAFVGHLGPVDLAAVSLGSSVFMFL-FSILMGLGTATTALVAQAVGAGNYQRLGRQAQQSLLLA   79 (342)
T ss_pred             ChHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHhHHHHHHH-HHHHHHHHHhHHHHHHHHHCCCChHHHHHHHHHHHHHH
Confidence            78899999999999999999999999999999999998887 89999999999999999999999999999999999999


Q ss_pred             HHHHHHHHH-HHHhHHHHHHHcCCCHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHhH
Q 021881          114 FFAIIPISL-LWLNLETVMIFMGQDKDITAMAATYTLYALPDLLTNTLLQPLRVFLRSQKVTKPMMWCTLVAVMFHVPLN  192 (306)
Q Consensus       114 ~~~~i~~~~-~~~~~~~il~~~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~i~~~~~i~l~  192 (306)
                      ..++++..+ ++.+.+++..+++.|++..+++..++++++++.++.++..++.+++++.||++.+++.++++.+++++++
T Consensus        80 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~i~~~~~~i~~~  159 (342)
T TIGR00797        80 LLLGLPVLLVGYFFIDPLLSLMGADGEVAELAQDYLRILILGIPAYLLNFVLRGFLRGQGDTKTPMYITLIGNVINIILN  159 (342)
T ss_pred             HHHHHHHHHHHHHhHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHh
Confidence            999998865 6888899999998888899999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHh-hcC-CChhhhHHHHHHHHHHHHHHHhhhhhhhhHHhhhhhhhhhhheeeecccchHHHHHHhhh----------
Q 021881          193 YCLVM-KLK-LGVPGVAMASVVCNLNMLKIGFSGLWFGLLSAQAACAVSILYVVLVRTDWEAEAMKAMKL----------  260 (306)
Q Consensus       193 ~~li~-~~~-~G~~Ga~~a~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------  260 (306)
                      +++++ .++ +|+.|+++++.+++.+..++.....++..         -.......+.+++++..|+.-+          
T Consensus       160 ~~li~~~~g~~g~~g~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~k~~~~~~~P~~~~~l  230 (342)
T TIGR00797       160 YILIFGKFGFLGIVGAALATVISYWLMFLLLLYYIKKAK---------KIGLKWEGLLKPDWEVLKRLLKLGLPIAFRVI  230 (342)
T ss_pred             HHHHhcCccccccHHHHHHHHHHHHHHHHHHHHHHHhCC---------CcccccccccCCCHHHHHHHHHhCchHHHHHH
Confidence            99987 567 88999999999999998876332222100         0000000112333333332221          


Q ss_pred             ---hHHHHHHHHhhcCCCchhhHHHHHHHHhhhhHHHHHhhhhhcCC
Q 021881          261 ---TSLEISTFNAGAGDTNEEEEEEESKGLLLYGICFRLLDAFFSGW  304 (306)
Q Consensus       261 ---~~~~~~~~~~~~~~~~~~~~a~~~i~~~i~~~~~~~~~~~~~~~  304 (306)
                         .........  ....|+++++++++..++.++.+++..+++.++
T Consensus       231 ~~~~~~~~~~~i--~~~~g~~~v~~~~~a~~~~~~~~~~~~~~~~a~  275 (342)
T TIGR00797       231 LESLSFALLALL--VARLGSIALAAHQIALNVESLLFMPAFGFGIAV  275 (342)
T ss_pred             HHHHHHHHHHHH--HHHcCcHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence               011111111  224688999999999999999999998887654

The MATE family consists of probable efflux proteins including a functionally characterized multi drug efflux system from Vibrio parahaemolyticus, a putative ethionine resistance protein of Saccharomyces cerevisiae, and the functionally uncharacterized DNA damage-inducible protein F (DinF) of E. coli. These proteins have 12 probable TMS.

>KOG1347 consensus Uncharacterized membrane protein, predicted efflux pump [General function prediction only]

Probab=99.91  E-value=7.2e-22  Score=182.68  Aligned_cols=265  Identities=35%  Similarity=0.535  Sum_probs=238.7

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccChhhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhcCCChh
Q 021881           21 VVEELKELWGMALPMTGMNILVFIRAVVSVLFLGRLGSLELAGGALSIGFTNITGYSVLVGLASGLEPVCSQAYGSKNWD  100 (306)
Q Consensus        21 ~~~~~k~~l~~~~P~~~~~~~~~~~~~~~~~~i~~~g~~~~a~~~~~~~i~~l~~~~~~~gi~~a~~~~~s~~~g~~~~~  100 (306)
                      ...+.|++.+++.|..+..+.+.....+++.++||+|+.++++.+++....+..++.+..|+..+..++.+|++|+++++
T Consensus        23 ~~~e~k~l~~ia~P~i~~~~~~~~~~~is~~f~GhlG~leLaa~sla~s~~n~~~~s~~~gl~~aletlcgQa~ga~~~~  102 (473)
T KOG1347|consen   23 LVTESKELARLALPAILTFLAQPLLSLVSTAFAGHLGNLELASVSLANSFANITGVSILLGLQLALDTLCGQAFGAKKFT  102 (473)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhhccccchHHHHHHHHHHhhcccchHHhhccchhhhcchHhhhcccccc
Confidence            36889999999999999999999999999999999999999999999999999889999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHcCCCHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCCchHHHHH
Q 021881          101 LLSLSLQRMILILFFAIIPISLLWLNLETVMIFMGQDKDITAMAATYTLYALPDLLTNTLLQPLRVFLRSQKVTKPMMWC  180 (306)
Q Consensus       101 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~il~~~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~  180 (306)
                      ......+++.......++|..+++.+.++++..+++|+++...+..|.++..+..+.+.....+..++|+++++.+..++
T Consensus       103 ~lg~~lqrs~~~l~~~~~~~~~l~~~~~~il~~lgq~~~i~~~a~~y~~~~ip~~~a~~~~~~l~~~lq~Q~~~~~~~~~  182 (473)
T KOG1347|consen  103 ALGVYLQRSGIVLLVQGLPISLLILNSEPILLLLGQDPDISRDAGSYAFMLIPGLFSYAVSFPLAKFLQAQSITLPLLVI  182 (473)
T ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHccHHHHHHhCCChhHHHHHhhhHhhhcchhhhhHHHHHHHHHHHhccCchHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHhHHHHHhhcCCChhhhHHHHHHHHHHHHHHHhhhhhhhhHHhhhhhhhhhhheeee--cccch---HH--
Q 021881          181 TLVAVMFHVPLNYCLVMKLKLGVPGVAMASVVCNLNMLKIGFSGLWFGLLSAQAACAVSILYVVLV--RTDWE---AE--  253 (306)
Q Consensus       181 ~~i~~~~~i~l~~~li~~~~~G~~Ga~~a~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~---~~--  253 (306)
                      .....++|+++++++++..++|..|++++..+++.....+                  +..|....  +..|.   .+  
T Consensus       183 ~~~~~~lhi~~~~llv~~~~~g~~Gaala~~~s~w~~~~~------------------l~~yi~~~~~~~~w~~~s~~~~  244 (473)
T KOG1347|consen  183 GLVALVLHILLTWLLVSKLGLGIKGAALALVASYWLNVRI------------------LLLYAVLSGCLAAWSGFSGEFD  244 (473)
T ss_pred             HHHHHHHHHHHHHHhhhcccCCCccchHHHHHHHHHHHHH------------------HHHHheecCchhhhhhhhHhhh
Confidence            9999999999999999999999999999999999998876                  33333221  22222   11  


Q ss_pred             ----HHH---------HhhhhHHHHHHHHhhcCCCchhhHHHHHHHHhhhhHHHHHhhhhhcC
Q 021881          254 ----AMK---------AMKLTSLEISTFNAGAGDTNEEEEEEESKGLLLYGICFRLLDAFFSG  303 (306)
Q Consensus       254 ----~~~---------~~~~~~~~~~~~~~~~~~~~~~~~a~~~i~~~i~~~~~~~~~~~~~~  303 (306)
                          ..+         ..+++..|...+..|....++.++++++|+.++....||...+++-|
T Consensus       245 ~~~~~~~lai~s~~miclE~w~~eil~l~~G~l~np~~~~~~~sI~~~~~~~~~~~~~~~~~a  307 (473)
T KOG1347|consen  245 SWGPFFALAIPSAVMICLEWWAYEILVLLAGLLGNAKVSLASQSICLEIGGWHLMIPGAFSAA  307 (473)
T ss_pred             hHHHHHHHhhcchheeHHHHHHHHHHHHHHhccCCcHHHHHHHHHHHHHHHHHHHHhhhhhhh
Confidence                110         13456778888888887778899999999999999999999888765

>TIGR01695 mviN integral membrane protein MviN

Probab=99.90  E-value=2.5e-21  Score=182.73  Aligned_cols=201  Identities=19%  Similarity=0.174  Sum_probs=184.1

Q ss_pred             chhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccChhhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhcCC
Q 021881           18 FSQVVEELKELWGMALPMTGMNILVFIRAVVSVLFLGRLGSLELAGGALSIGFTNITGYSVLVGLASGLEPVCSQAYGSK   97 (306)
Q Consensus        18 ~~~~~~~~k~~l~~~~P~~~~~~~~~~~~~~~~~~i~~~g~~~~a~~~~~~~i~~l~~~~~~~gi~~a~~~~~s~~~g~~   97 (306)
                      ++.+++..|++++++.|..+++....+...+|+.+.+.+|++++++|+.+.++.+++...+..+++++..|.++|++|++
T Consensus       215 ~~~~~~~~k~~l~~~~p~~~~~~~~~~~~~id~~~~~~~~~~~v~~~~~a~~l~~~~~~~~~~~i~~~~~P~~s~~~~~~  294 (502)
T TIGR01695       215 FNFRDPGLKRFLKLFLPTTLGSSASQITLLINTALASFLEIGSVSALYYANRIYQLPLGIFGISLSTVLLPKLSRHASEG  294 (502)
T ss_pred             CCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence            34456789999999999999999999999999998666999999999999999988723467899999999999999999


Q ss_pred             ChhHHHHHHHHHHHHHHHHHHHHHH-HHHhHHHHHHHcCC----CHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHcC
Q 021881           98 NWDLLSLSLQRMILILFFAIIPISL-LWLNLETVMIFMGQ----DKDITAMAATYTLYALPDLLTNTLLQPLRVFLRSQK  172 (306)
Q Consensus        98 ~~~~~~~~~~~~~~~~~~~~i~~~~-~~~~~~~il~~~~~----~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~g  172 (306)
                      |+|++++..++.......+++|..+ ++.++++++.++.+    |+|..+.+..++++++++.++.+++.++.+.+++.|
T Consensus       295 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ii~l~~~~~~f~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~a~g  374 (502)
T TIGR01695       295 NWNELRDLLNQGIRLSLLLTIPSSFGLLILSIPIVSLLFERGAFSEEDTVMTATILAAYGLGLIFYSLQKVLLRAFYARK  374 (502)
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhcc
Confidence            9999999999999999999999865 68899999988865    567889999999999999999999999999999999


Q ss_pred             CchHHHHHHHHHHHHHHHhHHHHHhhcCCChhhhHHHHHHHHHHHHHH
Q 021881          173 VTKPMMWCTLVAVMFHVPLNYCLVMKLKLGVPGVAMASVVCNLNMLKI  220 (306)
Q Consensus       173 ~~~~~~~~~~i~~~~~i~l~~~li~~~~~G~~Ga~~a~~i~~~~~~~~  220 (306)
                      |+|.+++.+..+.++|+++++++++  .+|..|+++|+++++.+..++
T Consensus       375 ~~~~~~~~~~~~~~i~i~l~~~l~~--~~G~~G~~~a~~i~~~~~~~~  420 (502)
T TIGR01695       375 DTRTPFINSVISVVLNALLSLLLIF--PLGLVGIALATSAASMVSSVL  420 (502)
T ss_pred             CCccCHHHHHHHHHHHHHHHHHHHH--HHhhhHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999987  589999999999999998866

This model represents MviN, a family of integral membrane proteins predicted to have ten or more transmembrane regions. Although frequently listed as a virulence protein, it is not restricted to pathogens and it is an essential protein in Sinorhizobium meliloti. In a number of species its gene is adjacent to that of the uridylyltransferase GlnD, the signal-transducing enzyme that performs the key modification to the nitrogen regulatory protein PII.

>PRK10367 DNA-damage-inducible SOS response protein; Provisional

Probab=99.89  E-value=2.7e-21  Score=179.27  Aligned_cols=191  Identities=17%  Similarity=0.110  Sum_probs=164.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccChhhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhcCCChhHH
Q 021881           23 EELKELWGMALPMTGMNILVFIRAVVSVLFLGRLGSLELAGGALSIGFTNITGYSVLVGLASGLEPVCSQAYGSKNWDLL  102 (306)
Q Consensus        23 ~~~k~~l~~~~P~~~~~~~~~~~~~~~~~~i~~~g~~~~a~~~~~~~i~~l~~~~~~~gi~~a~~~~~s~~~g~~~~~~~  102 (306)
                      +.+|+++|++.|..+++........+.+.+++++|++++|+|+++.++.++. +.+..|++++.+++++|++|+||+|++
T Consensus       229 ~~~~~il~ig~P~~~~~~~~~~~~~~~~~~~~~~G~~alAa~~I~~~i~~~~-~~~~~gl~~a~~~lvg~~~Ga~~~~~a  307 (441)
T PRK10367        229 GNFRRLLALNRDIMLRSLLLQLCFGAITVLGARLGSDIIAVNAVLMTLLTFT-AYALDGFAYAVEAHSGQAYGARDGSQL  307 (441)
T ss_pred             HHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHH-HHHHHhHHHHHHHHHHHHHcCCCHHHH
Confidence            4789999999999999999999999999999999999999999999999998 999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHH-HHHhHHHHHHHcCCCHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHcC---CchHHH
Q 021881          103 SLSLQRMILILFFAIIPISL-LWLNLETVMIFMGQDKDITAMAATYTLYALPDLLTNTLLQPLRVFLRSQK---VTKPMM  178 (306)
Q Consensus       103 ~~~~~~~~~~~~~~~i~~~~-~~~~~~~il~~~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~g---~~~~~~  178 (306)
                      |+..+++..++...+.+..+ ++.+++++..+|++|+|+.+.+..++++.++..+......+..+.++|.+   |+|.++
T Consensus       308 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~lFt~d~~v~~~~~~~l~i~~~~~~~~~~~~~~~~~~~g~lrg~dt~~~~  387 (441)
T PRK10367        308 LDVWRAACRQSGIVALLFSLVYALAGEHIIALLTSLPQIQQLADRYLIWQVILPLVGVWCYLLDGMFIGATRAAEMRNSM  387 (441)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCccchHHHHHHH
Confidence            99999999999999988865 68889999999999999999999999999876443324444444455544   599999


Q ss_pred             HHHHHHHHHHHHhHHHHHhhcCCChhhhHHHHHHHHHHHHHH
Q 021881          179 WCTLVAVMFHVPLNYCLVMKLKLGVPGVAMASVVCNLNMLKI  220 (306)
Q Consensus       179 ~~~~i~~~~~i~l~~~li~~~~~G~~Ga~~a~~i~~~~~~~~  220 (306)
                      ++++++..+    .++..+  ++|+.|+|++..+++.+..++
T Consensus       388 ~~~~~~~~~----~~~~~~--~~g~~Gvw~a~~~~~~~~~i~  423 (441)
T PRK10367        388 AVAAAGFAL----TLLTLP--WLGNHGLWLALTVFLALRGLS  423 (441)
T ss_pred             HHHHHHHHH----HHHHHH--HcCchHHHHHHHHHHHHHHHH
Confidence            999988642    122223  578999999999999888755

>PF01554 MatE: MatE; InterPro: IPR002528 Characterised members of the Multi Antimicrobial Extrusion (MATE) family function as drug/sodium antiporters

Probab=99.86  E-value=2.1e-22  Score=161.56  Aligned_cols=160  Identities=23%  Similarity=0.394  Sum_probs=155.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHhccChhhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhcCCChhHHHHHHHHHHHHH
Q 021881           34 PMTGMNILVFIRAVVSVLFLGRLGSLELAGGALSIGFTNITGYSVLVGLASGLEPVCSQAYGSKNWDLLSLSLQRMILIL  113 (306)
Q Consensus        34 P~~~~~~~~~~~~~~~~~~i~~~g~~~~a~~~~~~~i~~l~~~~~~~gi~~a~~~~~s~~~g~~~~~~~~~~~~~~~~~~  113 (306)
                      |.+++++.+.+...+|+.+++++|++++++++++.++.++. ..+..|++++..+.+||++|++|+|++++..+++..+.
T Consensus         1 P~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~~i~~~~~~~~-~~~~~g~~~a~~~~~s~~~G~~~~~~~~~~~~~~~~~~   79 (162)
T PF01554_consen    1 PIALMQLLQVLGFIIDTIFVGRLGPEALAAYGIASSIFSIL-FMLIFGLATALQILISQNIGAGDYKRAKKVVRQGLLLS   79 (162)
T ss_dssp             HHHHHHHHHHHHHHHHHHCCHCCTTCCCCHCCHHHHHHHHH-HHHHHHHHHHHHHHHCCCCCSSSTTTCCCHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHH-hhhcccccccccceeecccccccccccccccccccccc
Confidence            89999999999999999999999999999999999999998 99999999999999999999999999999999999999


Q ss_pred             HHHHHHHHH-HHHhHHHHHHHcCCCHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCCchHHHHHHHHHH-HHHHHh
Q 021881          114 FFAIIPISL-LWLNLETVMIFMGQDKDITAMAATYTLYALPDLLTNTLLQPLRVFLRSQKVTKPMMWCTLVAV-MFHVPL  191 (306)
Q Consensus       114 ~~~~i~~~~-~~~~~~~il~~~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~i~~-~~~i~l  191 (306)
                      ..++++..+ .+.+.+++..++++|+|+.+.+.+|+++..++.|+..+..+..++++|.||+|.+++.++++. ++++|+
T Consensus        80 ~~~~~~~~~~~~~~~~~i~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~i~l  159 (162)
T PF01554_consen   80 LIIGLLLSLVLLLFSEFILSLFGNDPEVIEIARQYLRIMAFSIPFFALFFVFSGILQGIGRTKIAMYISIISFWIINIPL  159 (162)
T ss_dssp             HHHHHHHHHHHHHHHHCCHCTSSSTTCCHHHHHHHHCCHHHHHHHHHHHHHHCCCCGCCSTHCCCHHHHHHHHHHHHHHH
T ss_pred             hhcccchhhhhhhHHHHHHHHhhhhHHHHHHhhccchhhhhHHHHHHHHHHHHHHHHHCCcHHHHHHHHHHHHHHHHHhH
Confidence            999999976 588999999999999999999999999999999999999999999999999999999999999 999999


Q ss_pred             HHH
Q 021881          192 NYC  194 (306)
Q Consensus       192 ~~~  194 (306)
                      +|+
T Consensus       160 ~yl  162 (162)
T PF01554_consen  160 AYL  162 (162)
T ss_dssp             HHH
T ss_pred             HhC
Confidence            985

These proteins mediate resistance to a wide range of cationic dyes, fluroquinolones, aminoglycosides and other structurally diverse antibodies and drugs. MATE proteins are found in bacteria, archaea and eukaryotes. These proteins are predicted to have 12 alpha-helical transmembrane regions, some of the animal proteins may have an additional C-terminal helix. ; GO: 0015238 drug transmembrane transporter activity, 0015297 antiporter activity, 0006855 drug transmembrane transport, 0055085 transmembrane transport, 0016020 membrane; PDB: 3MKU_B 3MKT_B.

>PF03023 MVIN: MviN-like protein; InterPro: IPR004268 This entry represents MviN, a family of integral membrane proteins predicted to have ten or more transmembrane regions

Probab=99.84  E-value=2.3e-18  Score=160.05  Aligned_cols=200  Identities=17%  Similarity=0.198  Sum_probs=186.7

Q ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccChhhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhcCCC
Q 021881           19 SQVVEELKELWGMALPMTGMNILVFIRAVVSVLFLGRLGSLELAGGALSIGFTNITGYSVLVGLASGLEPVCSQAYGSKN   98 (306)
Q Consensus        19 ~~~~~~~k~~l~~~~P~~~~~~~~~~~~~~~~~~i~~~g~~~~a~~~~~~~i~~l~~~~~~~gi~~a~~~~~s~~~g~~~   98 (306)
                      ..+.+..|++++...|..++.....+...+|+.+.+.+++..+++++.+.++.+++...+..++++...|..|++..++|
T Consensus       191 ~~~~~~~~~~~~~~~p~~l~~~~~qi~~lv~~~laS~l~~G~vs~l~YA~~l~~lp~~i~~~~i~tv~~P~ls~~~~~~d  270 (451)
T PF03023_consen  191 DWRDPNLKRFLKLAIPLLLSSSISQINILVDRALASFLGEGSVSALNYAQRLYQLPLGIFAVSISTVVFPKLSRLAAEGD  270 (451)
T ss_pred             CCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence            33456799999999999999999999999999999999999999999999999998567788999999999999999999


Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHH-HHHhHHHHHHHcC----CCHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCC
Q 021881           99 WDLLSLSLQRMILILFFAIIPISL-LWLNLETVMIFMG----QDKDITAMAATYTLYALPDLLTNTLLQPLRVFLRSQKV  173 (306)
Q Consensus        99 ~~~~~~~~~~~~~~~~~~~i~~~~-~~~~~~~il~~~~----~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~g~  173 (306)
                      .++.++..++++...+.+.+|.++ ++.+++|+++++.    .|+|..+.+...+++++++.|+.++...+...+.+.+|
T Consensus       271 ~~~~~~~~~~~l~~~~~i~iP~~~~~~~~a~~iV~llf~rG~F~~~~~~~ta~~l~~y~~~l~~~~l~~ll~r~fya~~~  350 (451)
T PF03023_consen  271 WEEFRKTLRKALRLILLILIPASIGLIVLAEPIVRLLFERGAFTAEDTQLTASALRIYALGLPFYALNDLLSRVFYALGD  350 (451)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHccCCCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHccC
Confidence            999999999999999999999965 7999999997774    36777899999999999999999999999999999999


Q ss_pred             chHHHHHHHHHHHHHHHhHHHHHhhcCCChhhhHHHHHHHHHHHHHH
Q 021881          174 TKPMMWCTLVAVMFHVPLNYCLVMKLKLGVPGVAMASVVCNLNMLKI  220 (306)
Q Consensus       174 ~~~~~~~~~i~~~~~i~l~~~li~~~~~G~~Ga~~a~~i~~~~~~~~  220 (306)
                      +|.++..++++.++|+++++++.+  .+|..|.++|+.++..+.+++
T Consensus       351 ~~~~~~~~~~~~~lni~l~~~l~~--~~g~~Glala~sl~~~i~~~~  395 (451)
T PF03023_consen  351 TKTPVRISVISVVLNIILSILLVP--FFGVAGLALATSLSAIISALL  395 (451)
T ss_pred             cHhHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHH
Confidence            999999999999999999999888  789999999999999998866

Although frequently listed as a virulence protein, it is not restricted to pathogens and it is an essential protein in Sinorhizobium meliloti. In a number of species its gene is adjacent to that of the uridylyltransferase GlnD, the signal-transducing enzyme that performs the key modification to the nitrogen regulatory protein PII []. Disruption of the MviN open reading frame results in flagellar structures that contain only the basal body and hook complex that lack the flagellum; suggesting that MviN might be involved in flagellin export or assembly []. Genome comparison studies led to MviN being predicted to be a peptidoglycan lipid II flippase though currently there is no direct evidence to support this annotation [].

>TIGR02900 spore_V_B stage V sporulation protein B

Probab=99.84  E-value=9.7e-19  Score=164.55  Aligned_cols=197  Identities=15%  Similarity=0.196  Sum_probs=171.0

Q ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-cCh------hhHHHH----HHHHHHHHHHHHHHHHHHHhhHH
Q 021881           19 SQVVEELKELWGMALPMTGMNILVFIRAVVSVLFLGR-LGS------LELAGG----ALSIGFTNITGYSVLVGLASGLE   87 (306)
Q Consensus        19 ~~~~~~~k~~l~~~~P~~~~~~~~~~~~~~~~~~i~~-~g~------~~~a~~----~~~~~i~~l~~~~~~~gi~~a~~   87 (306)
                      +.+++.+|++++++.|..++++...+...+|+.++++ +++      ++.+.+    +++.++.+++ ..+..+++++..
T Consensus       218 ~~~~~~~k~l~~~~~p~~l~~~~~~~~~~~d~~ii~~~l~~~g~~~~~a~~~~g~~~~~a~~i~~~~-~~~~~~l~~~~~  296 (488)
T TIGR02900       218 SEGKALLFDLFSVSLPLTLSRFIGSLLYFLETLLVPQRLVIAGVTYREATSLYGKLSGMAMPLLTFP-AVITSSLSTALV  296 (488)
T ss_pred             cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHChHHHHHHhH-HHHHHHHHHHHH
Confidence            3456789999999999999999999999999999987 432      122222    3556677777 778899999999


Q ss_pred             HHHHHHhcCCChhHHHHHHHHHHHHHHHHHHHHHH-HHHhHHHHHHHcCCCHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Q 021881           88 PVCSQAYGSKNWDLLSLSLQRMILILFFAIIPISL-LWLNLETVMIFMGQDKDITAMAATYTLYALPDLLTNTLLQPLRV  166 (306)
Q Consensus        88 ~~~s~~~g~~~~~~~~~~~~~~~~~~~~~~i~~~~-~~~~~~~il~~~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~  166 (306)
                      |.++|++|++|+|+.++..++...+...+++|..+ +..++++++.++.++++    +..++++.+++.++..+.....+
T Consensus       297 p~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~~~~~~~~----~~~~l~i~~~~~~~~~~~~~~~~  372 (488)
T TIGR02900       297 PDISEAMAKKNYSSIEKRINQAIKISLLLGLITTVILLVIPDELGALFYGRPD----AGNFIRVLAPSFPFLYFSAPLQS  372 (488)
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCc----hHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999865 68889999988876543    46699999999999999999999


Q ss_pred             HHHHcCCchHHHHHHHHHHHHHHHhHHHHHhhcCCChhhhHHHHHHHHHHHHHH
Q 021881          167 FLRSQKVTKPMMWCTLVAVMFHVPLNYCLVMKLKLGVPGVAMASVVCNLNMLKI  220 (306)
Q Consensus       167 ~l~~~g~~~~~~~~~~i~~~~~i~l~~~li~~~~~G~~Ga~~a~~i~~~~~~~~  220 (306)
                      .+++.||+|.+++.++++.++|++++++++...++|+.|+++|+++++.+..++
T Consensus       373 ~l~~~g~~~~~~~~~~~~~i~~i~l~~~l~~~~~~G~~Gaaia~~i~~~~~~~~  426 (488)
T TIGR02900       373 ILQGLGKQKVALRNSLIGAIVKIILLFVLTSIPSINIYGYAITFIITSVLVTIL  426 (488)
T ss_pred             HHHhcCcchHHHHHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHHH
Confidence            999999999999999999999999999988323789999999999999988876

SpoVB is the stage V sporulation protein B of the bacterial endopore formation program in Bacillus subtilis and various other Firmcutes. It is nearly universal among endospore-formers. Paralogs with rather high sequence similarity to SpoVB exist, including YkvU in B. subtilis and a number of proteins in the genus Clostridium. Member sequences for the seed alignment were chosen to select those proteins, no more than one to a genome, closest to B. subtilis SpoVB in a neighbor joining tree.

>PRK15099 O-antigen translocase; Provisional

Probab=99.81  E-value=1.3e-17  Score=153.96  Aligned_cols=197  Identities=10%  Similarity=0.021  Sum_probs=174.5

Q ss_pred             CchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-ccChhhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhc
Q 021881           17 SFSQVVEELKELWGMALPMTGMNILVFIRAVVSVLFLG-RLGSLELAGGALSIGFTNITGYSVLVGLASGLEPVCSQAYG   95 (306)
Q Consensus        17 ~~~~~~~~~k~~l~~~~P~~~~~~~~~~~~~~~~~~i~-~~g~~~~a~~~~~~~i~~l~~~~~~~gi~~a~~~~~s~~~g   95 (306)
                      +++.+++.+|+++++|.|..++++...+....|+.+++ ++|++++|.|+.+.++.+.+...+..+++++..|.++|+  
T Consensus       206 ~~~~~~~~~k~ll~~g~p~~~~~~~~~i~~~~~~~~l~~~~g~~~vg~y~~a~~i~~~~~~~~~~~~~~a~~P~~s~~--  283 (416)
T PRK15099        206 KPSWDNGLAGQLGKFTLMALITSVTLPVAYVMMRNLLAAHYSWDEVGIWQGVSSISDAYLQFITASFSVYLLPTLSRL--  283 (416)
T ss_pred             hccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc--
Confidence            34557888999999999999999999999999999997 599999999999999977443788999999999999995  


Q ss_pred             CCChhHHHHHHHHHHHHHHHHHHHHHH-HHHhHHHHHHHcCCCHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCCc
Q 021881           96 SKNWDLLSLSLQRMILILFFAIIPISL-LWLNLETVMIFMGQDKDITAMAATYTLYALPDLLTNTLLQPLRVFLRSQKVT  174 (306)
Q Consensus        96 ~~~~~~~~~~~~~~~~~~~~~~i~~~~-~~~~~~~il~~~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~g~~  174 (306)
                       +|+|+.++..++.......++++..+ ++.++++++.++.+|+  ++.+.+++++.+++.++...+..+...+.+.+++
T Consensus       284 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~a~~ii~l~~g~~--~~~~~~~~~~l~~~~~l~~~~~~~g~~~~~~~~~  360 (416)
T PRK15099        284 -TEKRDITREIVKALKFVLPAVAAASFTVWLLRDFAIWLLFSNK--FTAMRDLFAWQLVGDVLKVGAYVFGYLVIAKASL  360 (416)
T ss_pred             -CChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence             67889999999999999888888865 5799999999998776  5567779999999999888888887777788888


Q ss_pred             hHHHHHHHHHHHHHHHhHHHHHhhcCCChhhhHHHHHHHHHHHHHH
Q 021881          175 KPMMWCTLVAVMFHVPLNYCLVMKLKLGVPGVAMASVVCNLNMLKI  220 (306)
Q Consensus       175 ~~~~~~~~i~~~~~i~l~~~li~~~~~G~~Ga~~a~~i~~~~~~~~  220 (306)
                      +......+...++++++++++++  .+|..|+++++++++.+..++
T Consensus       361 ~~~~~~~~~~~~l~i~l~~~li~--~~G~~G~a~a~~is~~~~~~~  404 (416)
T PRK15099        361 RFYILAEVSQFTLLTGFAHWLIP--LHGALGAAQAYMATYIVYFSL  404 (416)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHH--HhhhHHHHHHHHHHHHHHHHH
Confidence            88888888888999999999998  689999999999999999876

>COG0728 MviN Uncharacterized membrane protein, putative virulence factor [General function prediction only]

Probab=99.78  E-value=2.4e-16  Score=145.60  Aligned_cols=200  Identities=17%  Similarity=0.124  Sum_probs=185.0

Q ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccChhhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhcCCC
Q 021881           19 SQVVEELKELWGMALPMTGMNILVFIRAVVSVLFLGRLGSLELAGGALSIGFTNITGYSVLVGLASGLEPVCSQAYGSKN   98 (306)
Q Consensus        19 ~~~~~~~k~~l~~~~P~~~~~~~~~~~~~~~~~~i~~~g~~~~a~~~~~~~i~~l~~~~~~~gi~~a~~~~~s~~~g~~~   98 (306)
                      ..+.+..|++.+...|..++....++...+|+.+.+.+.+..++.+..++++.+++...+..++++...|..|++..++|
T Consensus       225 ~~~~~~lk~~~~~~~p~~l~~sisQi~lli~~~iAS~l~~Gsis~l~YA~rl~qlPlGifgvai~tvllP~lSr~~~~~~  304 (518)
T COG0728         225 GFKDPGLKRFLKLMLPALLGVSISQINLLIDTAIASFLAEGSVSWLYYADRLYQLPLGIFGVALSTVLLPSLSRHAANGD  304 (518)
T ss_pred             CCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhcCC
Confidence            34447899999999999999999999999999999999999999999999999999678999999999999999999999


Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHH-HHHhHHHHHHHcC----CCHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCC
Q 021881           99 WDLLSLSLQRMILILFFAIIPISL-LWLNLETVMIFMG----QDKDITAMAATYTLYALPDLLTNTLLQPLRVFLRSQKV  173 (306)
Q Consensus        99 ~~~~~~~~~~~~~~~~~~~i~~~~-~~~~~~~il~~~~----~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~g~  173 (306)
                      .++.++..+++.+....+.+|.+. +..+++|+++.+.    .+++...++...+..+.++.++..+..++...+.+.+|
T Consensus       305 ~~~~~~~l~~~i~l~lll~lP~~~~l~~la~piv~~Lf~rG~F~~~d~~~ta~~L~~y~~gL~~~~L~~ll~~~FYAr~d  384 (518)
T COG0728         305 WPEFLKLLDWGLRLTLLLTLPASAGLLVLAEPIVSLLFERGAFTAEDVLMTAEALAAYSLGLIPFALVKLLSRVFYARED  384 (518)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCChHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHccC
Confidence            999999999999999999999965 7999999997663    35667788999999999999999999999999999999


Q ss_pred             chHHHHHHHHHHHHHHHhHHHHHhhcCCChhhhHHHHHHHHHHHHHH
Q 021881          174 TKPMMWCTLVAVMFHVPLNYCLVMKLKLGVPGVAMASVVCNLNMLKI  220 (306)
Q Consensus       174 ~~~~~~~~~i~~~~~i~l~~~li~~~~~G~~Ga~~a~~i~~~~~~~~  220 (306)
                      +|.|+++++++.++|+.+++.+.+  .+|..|.+.++.++.++++.+
T Consensus       385 ~ktP~~i~ii~~~~n~~l~~~l~~--~~~~~giala~s~a~~~~~~l  429 (518)
T COG0728         385 TKTPMKIAIISLVVNILLNLLLIP--PLGHVGLALATSLAAWVNALL  429 (518)
T ss_pred             CCcChHHHHHHHHHHHHHHHHHHh--hccchHHHHHHHHHHHHHHHH
Confidence            999999999999999999988777  678888999999998888766

>PRK10459 colanic acid exporter; Provisional

Probab=99.76  E-value=4.7e-16  Score=146.58  Aligned_cols=196  Identities=14%  Similarity=0.152  Sum_probs=174.3

Q ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-cChhhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhcCC
Q 021881           19 SQVVEELKELWGMALPMTGMNILVFIRAVVSVLFLGR-LGSLELAGGALSIGFTNITGYSVLVGLASGLEPVCSQAYGSK   97 (306)
Q Consensus        19 ~~~~~~~k~~l~~~~P~~~~~~~~~~~~~~~~~~i~~-~g~~~~a~~~~~~~i~~l~~~~~~~gi~~a~~~~~s~~~g~~   97 (306)
                      +.+++..|++++++.|...+++...+...+|+.++++ +|+++++.|+.+.++.+++...+...+++...|..++.  ++
T Consensus       200 ~~~~~~~k~ll~~~~~~~~~~~~~~~~~~~d~~~lg~~lg~~~vG~Y~~A~~l~~~~~~~i~~~i~~v~~P~~s~~--~~  277 (492)
T PRK10459        200 HFSLASVKPNLSFGAWQTAERIINYLNTNIDTILIGRILGAEVLGGYNLAYNVATVPPMKINPIITRVAFPVFAKI--QD  277 (492)
T ss_pred             eecHHHHHHHHhhhHHHHHHHHHHHHHhcCchhhhhHhhchHhhhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHh--cC
Confidence            3456788999999999999999999999999999999 89999999999999998863555566788899999886  67


Q ss_pred             ChhHHHHHHHHHHHHHHHHHHHHHH-HHHhHHHHHHHcCCCHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCCchH
Q 021881           98 NWDLLSLSLQRMILILFFAIIPISL-LWLNLETVMIFMGQDKDITAMAATYTLYALPDLLTNTLLQPLRVFLRSQKVTKP  176 (306)
Q Consensus        98 ~~~~~~~~~~~~~~~~~~~~i~~~~-~~~~~~~il~~~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~g~~~~  176 (306)
                      |.++.++.+++.......+++|..+ +..++++++.++.+++  ++.+...+++++++..+..........+++.||+|.
T Consensus       278 ~~~~~~~~~~~~~~~~~~~~~p~~~~l~~~a~~ii~ll~g~~--~~~a~~~l~il~~~~~~~~~~~~~~~~l~a~g~~~~  355 (492)
T PRK10459        278 DTEKLRVGFLKLLSVLGIINFPLLLGLMVVSNNFVPLVFGEK--WNSAIPILQLLCIVGLLRSVGNPIGSLLLAKGRADL  355 (492)
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhcChh--HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCccch
Confidence            8899999999999999999999865 6888899998776655  677889999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHhHHHHHhhcCCChhhhHHHHHHHHHHHHHH
Q 021881          177 MMWCTLVAVMFHVPLNYCLVMKLKLGVPGVAMASVVCNLNMLKI  220 (306)
Q Consensus       177 ~~~~~~i~~~~~i~l~~~li~~~~~G~~Ga~~a~~i~~~~~~~~  220 (306)
                      ++..+++...++++..+.+..  .+|+.|+++|+.+++.+.+..
T Consensus       356 ~~~~~~~~~~~~i~~~~~~~~--~~G~~g~a~a~~i~~~~~~~~  397 (492)
T PRK10459        356 SFKWNVFKTFLFIPAIVIGGQ--LAGLIGVALGFLLVQIINTIL  397 (492)
T ss_pred             hHHHHHHHHHHHHHHHHHHHh--hccHHHHHHHHHHHHHHHHHH
Confidence            999999999999998888776  679999999999999888765

>TIGR01695 mviN integral membrane protein MviN

Probab=99.74  E-value=6.5e-15  Score=139.10  Aligned_cols=189  Identities=14%  Similarity=0.110  Sum_probs=155.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhc-cChhhH-HHHHHHHHHHHHHHHHHH--HHHHhhHHHHHHHHhcCCChhHHH
Q 021881           28 LWGMALPMTGMNILVFIRAVVSVLFLGR-LGSLEL-AGGALSIGFTNITGYSVL--VGLASGLEPVCSQAYGSKNWDLLS  103 (306)
Q Consensus        28 ~l~~~~P~~~~~~~~~~~~~~~~~~i~~-~g~~~~-a~~~~~~~i~~l~~~~~~--~gi~~a~~~~~s~~~g~~~~~~~~  103 (306)
                      +.|-+.-.+++++...+.+.+|..++++ +|+++. ++++++.++.++. ..+.  .|++++..|...++.+++  |+++
T Consensus         2 ~~k~~~i~~~~~~~~~~~~~~~~~~~a~~lG~~~~~~~~~~~~~i~~~~-~~~~~~~g~~~a~i~~~~~~~~~~--~~~~   78 (502)
T TIGR01695         2 LLKSTLIVSLGTLFSRITGFVRDAIIASAFGAGLTADAFNVAFVIPNFF-RRLFAEGAFNSAFVPVFTKAKKKE--KEAR   78 (502)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCChHhhHHHHHHHHHHHH-HHHHHhhHHHHHHHHHHHHHHhhh--hHHH
Confidence            5677888899999999999999999999 999999 8999999998776 4443  368888878777664333  6788


Q ss_pred             HHHHHHHHHHHHHHHH-HHH-HHHhHHHHHHHc--CCCHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCCchHHHH
Q 021881          104 LSLQRMILILFFAIIP-ISL-LWLNLETVMIFM--GQDKDITAMAATYTLYALPDLLTNTLLQPLRVFLRSQKVTKPMMW  179 (306)
Q Consensus       104 ~~~~~~~~~~~~~~i~-~~~-~~~~~~~il~~~--~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~g~~~~~~~  179 (306)
                      +............+.. ..+ .+.+++++..++  +.|++..+.+.+|+++..++.++..+..+.++++|+.+|++.+++
T Consensus        79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~g~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~  158 (502)
T TIGR01695        79 RAFANTVTTLLILSLLLVVLIGIFFAPFVISLLAPGFADETRSLAVSLTRIMFPYLLLISLAAVFGGILNARKRFFIPSF  158 (502)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCeeHHHHH
Confidence            7777777766555443 344 577888888888  456777899999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHhHHHHHhhcCCChhhhH--HHHHHHHHHHHHHH
Q 021881          180 CTLVAVMFHVPLNYCLVMKLKLGVPGVA--MASVVCNLNMLKIG  221 (306)
Q Consensus       180 ~~~i~~~~~i~l~~~li~~~~~G~~Ga~--~a~~i~~~~~~~~~  221 (306)
                      .+++..+++++..+++..  ++|..|++  +++++++.+..++.
T Consensus       159 ~~i~~~i~~i~~~~~~~~--~~g~~~~~~~~~~~i~~~~~~~~~  200 (502)
T TIGR01695       159 SPILFNIGVILSLLFFDW--NYGQYSLALAIGVLIGGVAQLLIQ  200 (502)
T ss_pred             HHHHHHHHHHHHHHHHHc--ccchHHHHHHHHHHHHHHHHHHHH
Confidence            999998888775544443  78999998  99999999887663

This model represents MviN, a family of integral membrane proteins predicted to have ten or more transmembrane regions. Although frequently listed as a virulence protein, it is not restricted to pathogens and it is an essential protein in Sinorhizobium meliloti. In a number of species its gene is adjacent to that of the uridylyltransferase GlnD, the signal-transducing enzyme that performs the key modification to the nitrogen regulatory protein PII.

>PRK15099 O-antigen translocase; Provisional

Probab=99.73  E-value=2e-15  Score=139.37  Aligned_cols=258  Identities=10%  Similarity=0.008  Sum_probs=187.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhc-cChhhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhcCCChhHHHHHH
Q 021881           28 LWGMALPMTGMNILVFIRAVVSVLFLGR-LGSLELAGGALSIGFTNITGYSVLVGLASGLEPVCSQAYGSKNWDLLSLSL  106 (306)
Q Consensus        28 ~l~~~~P~~~~~~~~~~~~~~~~~~i~~-~g~~~~a~~~~~~~i~~l~~~~~~~gi~~a~~~~~s~~~g~~~~~~~~~~~  106 (306)
                      +.|-+.-...+++...+.+.+...+++| +|+++.+.++....+..+.......|++++....++|+  ++|+|+.++..
T Consensus         3 ~~k~~~~~~~~~~~~~~~~~l~~~i~ar~Lg~~~~G~~~~~~~~i~~~~~~~~~G~~~a~~~~ia~~--~~~~~~~~~~~   80 (416)
T PRK15099          3 LAKASLWTAASTLVKIGAGLLVVKLLAVSFGPAGVGQAGNFRQLITVLGVLAGAGIFNGVTKYVAQY--HDQPQQLRAVV   80 (416)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcHHHHHHHHHHHHHHHHHHHHcCCccceeeeeHHhc--CCCHHHHHHHH
Confidence            4566677788888889889999999999 99999999999999888773444788888889999988  78889999999


Q ss_pred             HHHHHHHHHHHHHHHH-HHHhHHHHHHHcCCCHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCCchHHHHHHHHHH
Q 021881          107 QRMILILFFAIIPISL-LWLNLETVMIFMGQDKDITAMAATYTLYALPDLLTNTLLQPLRVFLRSQKVTKPMMWCTLVAV  185 (306)
Q Consensus       107 ~~~~~~~~~~~i~~~~-~~~~~~~il~~~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~i~~  185 (306)
                      +.++...+..+++..+ .+.+.+++...+.+|++..    .+..+..+..++..+.....+.+|+.||++.++..++++.
T Consensus        81 ~~~~~l~~~~~~i~~~~~~~~~~~i~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~lr~~~~~~~~~~~~~~~~  156 (416)
T PRK15099         81 GTSSAMVLGFSTLLALVFLLAAAPISQGLFGHTDYQ----GVVRAVALIQMGIAWANLLLAILKGFRDAAGNALSLIVGS  156 (416)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCChhHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999888765 5888899988777777532    4666777767777888899999999999999999999999


Q ss_pred             HHHHHhHHHHHhhcCCChhhhHHHHHHHHHHHHHHHhhhhhhhhHHhhhhhhhhhhheeeecccchHHHHHHhhhh----
Q 021881          186 MFHVPLNYCLVMKLKLGVPGVAMASVVCNLNMLKIGFSGLWFGLLSAQAACAVSILYVVLVRTDWEAEAMKAMKLT----  261 (306)
Q Consensus       186 ~~~i~l~~~li~~~~~G~~Ga~~a~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----  261 (306)
                      ++|+.+ +++... ..|+.|+++|+++++.+..+...+.+++.          .-....+.+.+++++..|+.-..    
T Consensus       157 ~~~i~l-~i~~~~-~~Gv~Ga~iat~i~~~i~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~k~ll~~g~p~  224 (416)
T PRK15099        157 LIGVAA-YYLCYR-LGGYEGALLGLALVPALVVLPAGIMLIRR----------GTIPLSYLKPSWDNGLAGQLGKFTLMA  224 (416)
T ss_pred             HHHHHH-HHHHHH-HhcchHHHHHHHHHHHHHHHHHHHHHHHc----------cceehHhhhccCCHHHHHHHHHHHHHH
Confidence            999887 444442 24999999999999998876532222210          00000001223333333322110    


Q ss_pred             -------HHHHHHHHhhc-CCCchhhHHHHHHHHhhhh-HHHHHhhhhhcC
Q 021881          262 -------SLEISTFNAGA-GDTNEEEEEEESKGLLLYG-ICFRLLDAFFSG  303 (306)
Q Consensus       262 -------~~~~~~~~~~~-~~~~~~~~a~~~i~~~i~~-~~~~~~~~~~~~  303 (306)
                             ........... ...|+++++.++++.++.. +..++..++..+
T Consensus       225 ~~~~~~~~i~~~~~~~~l~~~~g~~~vg~y~~a~~i~~~~~~~~~~~~~~a  275 (416)
T PRK15099        225 LITSVTLPVAYVMMRNLLAAHYSWDEVGIWQGVSSISDAYLQFITASFSVY  275 (416)
T ss_pred             HHHHHHHHHHHHHHHHHHHhcCCHHHhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence                   00011111112 3679999999999999977 557887777654

>COG2244 RfbX Membrane protein involved in the export of O-antigen and teichoic acid [General function prediction only]

Probab=99.72  E-value=2.3e-15  Score=141.44  Aligned_cols=185  Identities=23%  Similarity=0.306  Sum_probs=172.8

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-cChhhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhcCCCh
Q 021881           21 VVEELKELWGMALPMTGMNILVFIRAVVSVLFLGR-LGSLELAGGALSIGFTNITGYSVLVGLASGLEPVCSQAYGSKNW   99 (306)
Q Consensus        21 ~~~~~k~~l~~~~P~~~~~~~~~~~~~~~~~~i~~-~g~~~~a~~~~~~~i~~l~~~~~~~gi~~a~~~~~s~~~g~~~~   99 (306)
                      ..+.+|++++.+.|..++.....+.+.+|+.++++ +|+++++.|+.+.++.... ..+...++....|..++.+.++|.
T Consensus       208 ~~~~~~~~l~~~~p~~~~~~~~~l~~~~D~~~i~~~l~~~~vG~Y~~a~~i~~~~-~~~~~~l~~~l~P~~s~~~~~~~~  286 (480)
T COG2244         208 SLALLKELLRFGLPLLLSSLLNFLFTNIDTLLLGLFLGPAQVGIYSAAQRLVSLL-LIVASALNRVLFPALSRAYAEGDR  286 (480)
T ss_pred             hhHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhhhHheecccccHHHHHH-HHHHHHHHHHHHHHHHHHHHcCcH
Confidence            47899999999999999999999999999999999 8999999999999998887 999999999999999999999999


Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHH-HHHhHHHHHHHcCCCHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCCchHHH
Q 021881          100 DLLSLSLQRMILILFFAIIPISL-LWLNLETVMIFMGQDKDITAMAATYTLYALPDLLTNTLLQPLRVFLRSQKVTKPMM  178 (306)
Q Consensus       100 ~~~~~~~~~~~~~~~~~~i~~~~-~~~~~~~il~~~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~g~~~~~~  178 (306)
                      ++.++..++........++|..+ +..+++++...+.+++  ++.+...+.+++++.++..+.......+++.|+++..+
T Consensus       287 ~~~~~~~~~~~~~~~~~~~p~~~~l~~~~~~~i~~~fg~~--~~~~~~~l~il~~~~~~~~~~~~~~~~l~~~g~~~~~~  364 (480)
T COG2244         287 KALKKLLRQSLKLLLLISIPALLGLLLLAPPIITLLFGEK--YASAAPILQLLALAGLFLSLVSLTSSLLQALGKQRLLL  364 (480)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhheeecCCc--ccchhHHHHHHHHHHHHHHHHHHHHHHHHHcCcchhhH
Confidence            99999999999999999999965 6888889998776665  33478899999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHhHHHHHhhcCCChhhhHHHH
Q 021881          179 WCTLVAVMFHVPLNYCLVMKLKLGVPGVAMAS  210 (306)
Q Consensus       179 ~~~~i~~~~~i~l~~~li~~~~~G~~Ga~~a~  210 (306)
                      +.+.++.++|+++++++++  .+|..|++.++
T Consensus       365 ~~~~~~~i~~~~l~~~li~--~~g~~g~~~a~  394 (480)
T COG2244         365 LISLISALLNLILNLLLIP--RFGLIGAAIAT  394 (480)
T ss_pred             HHHHHHHHHHHHHHhHHHH--hhhhhhHHHHH
Confidence            9999999999999999998  78899999999

>TIGR02900 spore_V_B stage V sporulation protein B

Probab=99.70  E-value=4.9e-15  Score=139.41  Aligned_cols=187  Identities=14%  Similarity=0.165  Sum_probs=162.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhc-cChhhHHHHHHHHHHHHHHHHHHH-HHHHhhHHHHHHHHhcCCChhHHHHHH
Q 021881           29 WGMALPMTGMNILVFIRAVVSVLFLGR-LGSLELAGGALSIGFTNITGYSVL-VGLASGLEPVCSQAYGSKNWDLLSLSL  106 (306)
Q Consensus        29 l~~~~P~~~~~~~~~~~~~~~~~~i~~-~g~~~~a~~~~~~~i~~l~~~~~~-~gi~~a~~~~~s~~~g~~~~~~~~~~~  106 (306)
                      .|-+.|.+++++...+.+.+|+.+++| +|+++.++++.+..+..+. ..+. .|++++....++|+.|++|+|++++.+
T Consensus         2 ~~~~~~~~~~~~~~~~~~~i~~~~l~r~Lg~~~~G~~~~~~~~~~~~-~~~~~~Gl~~a~~~~is~~~~~~~~~~~~~~~   80 (488)
T TIGR02900         2 LKGTFILTIANLITRILGFIFRIVLSRILGAEGVGLYGMAMPIYFLF-ITLTTGGLPVAISKFVAEASAKNDRKNIKKIL   80 (488)
T ss_pred             hHhHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHhhHHHHHHHHHHHH-HHHHhCCcHHHHHHHHHHHHhccchhhHHHHH
Confidence            466899999999999999999999999 8999999999999998887 5554 699999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHH-HHHhHHHHHHHcCCCHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCCchHHHHHHHHHH
Q 021881          107 QRMILILFFAIIPISL-LWLNLETVMIFMGQDKDITAMAATYTLYALPDLLTNTLLQPLRVFLRSQKVTKPMMWCTLVAV  185 (306)
Q Consensus       107 ~~~~~~~~~~~i~~~~-~~~~~~~il~~~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~i~~  185 (306)
                      +.+..+.+..+++..+ ++.+.+++...+.+|++..    .++++..+..++..+.....+++|+.+|.|..+..+.++.
T Consensus        81 ~~~~~l~l~~~~~~~~l~~~~~~~i~~~~~~~~~~~----~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~  156 (488)
T TIGR02900        81 KVSLIFTLIWSLIVTAIVFLLSPFIASTLLKDERSL----YSLLVICPAMPFIALSSVLKGYFQGISNMKPPAYIQVIEQ  156 (488)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhhHHHHHHHcCChhHH----HHHHHHHHHHHHHHHHHHHHHHHhhhccchHhHHHHHHHH
Confidence            9999999999988865 5777777777777776543    4788899999999999999999999999999999999999


Q ss_pred             HHHHHhHHHHHhh-----cCCChhhhHHHHHHHHHHHHHH
Q 021881          186 MFHVPLNYCLVMK-----LKLGVPGVAMASVVCNLNMLKI  220 (306)
Q Consensus       186 ~~~i~l~~~li~~-----~~~G~~Ga~~a~~i~~~~~~~~  220 (306)
                      +++++++..++..     .+.|+.|+.+++.+++.+..++
T Consensus       157 i~~~~~~~~~~~~~~~~~~~~~v~g~~~~~~i~~~~~~~~  196 (488)
T TIGR02900       157 IVRISVVALLISAFLPYGLEYAVAGAYLSLVLGELVSLLY  196 (488)
T ss_pred             HHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHH
Confidence            9988776665542     2467888999999999888876

SpoVB is the stage V sporulation protein B of the bacterial endopore formation program in Bacillus subtilis and various other Firmcutes. It is nearly universal among endospore-formers. Paralogs with rather high sequence similarity to SpoVB exist, including YkvU in B. subtilis and a number of proteins in the genus Clostridium. Member sequences for the seed alignment were chosen to select those proteins, no more than one to a genome, closest to B. subtilis SpoVB in a neighbor joining tree.

>TIGR00797 matE putative efflux protein, MATE family

Probab=99.63  E-value=1.9e-14  Score=129.17  Aligned_cols=133  Identities=20%  Similarity=0.294  Sum_probs=124.6

Q ss_pred             chhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccChhhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhcCC
Q 021881           18 FSQVVEELKELWGMALPMTGMNILVFIRAVVSVLFLGRLGSLELAGGALSIGFTNITGYSVLVGLASGLEPVCSQAYGSK   97 (306)
Q Consensus        18 ~~~~~~~~k~~l~~~~P~~~~~~~~~~~~~~~~~~i~~~g~~~~a~~~~~~~i~~l~~~~~~~gi~~a~~~~~s~~~g~~   97 (306)
                      .+.+++..|++++++.|.+++++...+...+|+.+++++|++++++|+++.++.++. ..+..+++++..|.+++++|++
T Consensus       208 ~~~~~~~~k~~~~~~~P~~~~~l~~~~~~~~~~~i~~~~g~~~v~~~~~a~~~~~~~-~~~~~~~~~a~~~~~~~~~~~~  286 (342)
T TIGR00797       208 LKPDWEVLKRLLKLGLPIAFRVILESLSFALLALLVARLGSIALAAHQIALNVESLL-FMPAFGFGIAVSILVGQALGAG  286 (342)
T ss_pred             cCCCHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHhCCC
Confidence            456778999999999999999999999999999999999999999999999999988 8999999999999999999999


Q ss_pred             ChhHHHHHHHHHHHHHHHHHHHHHH-HHHhHHHHHHHcCCCHHHHHHHHHHHHHH
Q 021881           98 NWDLLSLSLQRMILILFFAIIPISL-LWLNLETVMIFMGQDKDITAMAATYTLYA  151 (306)
Q Consensus        98 ~~~~~~~~~~~~~~~~~~~~i~~~~-~~~~~~~il~~~~~~~~~~~~~~~~l~i~  151 (306)
                      |+|+.++..+++....+.++++..+ ++.+++++.+++++||++.+++..++++.
T Consensus       287 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~~  341 (342)
T TIGR00797       287 DPKRAKEVARVALKLSLLLGLVLAIILILFREFIARLFTNDPEVLELAAIYLIFV  341 (342)
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHh
Confidence            9999999999999999999999865 68889999999999999999999988764

The MATE family consists of probable efflux proteins including a functionally characterized multi drug efflux system from Vibrio parahaemolyticus, a putative ethionine resistance protein of Saccharomyces cerevisiae, and the functionally uncharacterized DNA damage-inducible protein F (DinF) of E. coli. These proteins have 12 probable TMS.

>KOG1347 consensus Uncharacterized membrane protein, predicted efflux pump [General function prediction only]

Probab=99.55  E-value=2.5e-14  Score=132.72  Aligned_cols=231  Identities=19%  Similarity=0.199  Sum_probs=203.1

Q ss_pred             CCCCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCh--hhHHHHHHHHHHHHHHHHHHHHHHHhhHHH
Q 021881           11 YSHKLPSFSQVVEELKELWGMALPMTGMNILVFIRAVVSVLFLGRLGS--LELAGGALSIGFTNITGYSVLVGLASGLEP   88 (306)
Q Consensus        11 ~~~~~~~~~~~~~~~k~~l~~~~P~~~~~~~~~~~~~~~~~~i~~~g~--~~~a~~~~~~~i~~l~~~~~~~gi~~a~~~   88 (306)
                      .++.|..++...+.++++++++.|..+....+.-...+.....|.+++  .++++.++..++.... +....+++.+.++
T Consensus       232 ~~~~w~~~s~~~~~~~~~~~lai~s~~miclE~w~~eil~l~~G~l~np~~~~~~~sI~~~~~~~~-~~~~~~~~~a~st  310 (473)
T KOG1347|consen  232 CLAAWSGFSGEFDSWGPFFALAIPSAVMICLEWWAYEILVLLAGLLGNAKVSLASQSICLEIGGWH-LMIPGAFSAAVST  310 (473)
T ss_pred             chhhhhhhhHhhhhHHHHHHHhhcchheeHHHHHHHHHHHHHHhccCCcHHHHHHHHHHHHHHHHH-HHHhhhhhhhHHH
Confidence            456676666568899999999999999999999999999999999875  5799999999999987 8999999999999


Q ss_pred             HHHHHhcCCChhHHHHHHHHHHHHHHHHHHHHH-HHHHhHHHHHHHcCCCHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Q 021881           89 VCSQAYGSKNWDLLSLSLQRMILILFFAIIPIS-LLWLNLETVMIFMGQDKDITAMAATYTLYALPDLLTNTLLQPLRVF  167 (306)
Q Consensus        89 ~~s~~~g~~~~~~~~~~~~~~~~~~~~~~i~~~-~~~~~~~~il~~~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~  167 (306)
                      ++++.+|++|++++|.........++..+.... .++.+.+.+...|+.|+++.+...+..+++++....++.+.++.+.
T Consensus       311 rv~neLGag~p~~ar~~~~v~~~~~~~~g~~~~~~~~~~r~~~~~ift~~~ev~~~va~~~pll~~~~~~~~~q~v~~Gv  390 (473)
T KOG1347|consen  311 RVSNELGAGKPKRARVSAKVALQTSVAIGASLGTTLLACREVLGQIFTNSKEVLDLVADLTPLLALSILLNALQAVLSGV  390 (473)
T ss_pred             HHHHHHcCCChhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHhccchhhhhhe
Confidence            999999999999999999999999988888875 4688889999999999999999999999999999999999999999


Q ss_pred             HHHcCCchHHHHHHHHHH-HHHHHhHHHHHhhcCCChhhhHHHHHHHHHHHHHHHhhhhhhhhHHhhhhhhhhhhheeee
Q 021881          168 LRSQKVTKPMMWCTLVAV-MFHVPLNYCLVMKLKLGVPGVAMASVVCNLNMLKIGFSGLWFGLLSAQAACAVSILYVVLV  246 (306)
Q Consensus       168 l~~~g~~~~~~~~~~i~~-~~~i~l~~~li~~~~~G~~Ga~~a~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  246 (306)
                      .+|.|..+...++++... ++.+|....+.+..++|..|.|++...+..+...                    .......
T Consensus       391 a~g~g~q~~ga~vnl~~yyl~G~p~g~~l~~~~~~g~~glw~G~~~~~~~~~~--------------------~l~~~~~  450 (473)
T KOG1347|consen  391 ARGSGWQQIGAVINLVAYYLVGAPVGLYLGFFTKFGVKGLWIGILLGFSVQTL--------------------VLAIVTA  450 (473)
T ss_pred             EEeeccccceEEEeeeeeeEecCcceeEEEEEEecCceEEEeehHHHHHHHHH--------------------HHHHhee
Confidence            999999999999999999 8899999998877789998888877777444432                    2233355


Q ss_pred             cccchHHHHHHhhhhH
Q 021881          247 RTDWEAEAMKAMKLTS  262 (306)
Q Consensus       247 ~~~~~~~~~~~~~~~~  262 (306)
                      +.+|+++..++.++..
T Consensus       451 ~tdW~~~~~~a~~~~~  466 (473)
T KOG1347|consen  451 RTDWKNQAEKAFARII  466 (473)
T ss_pred             eccHHHHHHHHHHHHH
Confidence            7999999988877653

>PF03023 MVIN: MviN-like protein; InterPro: IPR004268 This entry represents MviN, a family of integral membrane proteins predicted to have ten or more transmembrane regions

Probab=99.31  E-value=4.4e-09  Score=98.07  Aligned_cols=169  Identities=15%  Similarity=0.117  Sum_probs=141.2

Q ss_pred             cChh-hHHHHHHHHHHHHHHHHHHH-HHHHhhHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHHHHHHH-HHHhHHHHHH
Q 021881           56 LGSL-ELAGGALSIGFTNITGYSVL-VGLASGLEPVCSQAYGSKNWDLLSLSLQRMILILFFAIIPISL-LWLNLETVMI  132 (306)
Q Consensus        56 ~g~~-~~a~~~~~~~i~~l~~~~~~-~gi~~a~~~~~s~~~g~~~~~~~~~~~~~~~~~~~~~~i~~~~-~~~~~~~il~  132 (306)
                      +|.. +..+|.++.++-+++...+. .+++++..|..++.. +++.|+.++..+....+..+..+.+++ .++++++++.
T Consensus         5 fG~s~~~Daf~~A~~ip~~l~~l~~~gal~~~~IP~~~~~~-~~~~~~~~~f~~~~~~~~~~~~~~l~~l~~lfa~~iv~   83 (451)
T PF03023_consen    5 FGASAEADAFFVAFTIPNFLRSLLAGGALSAAFIPVFSKAR-EKGEEEARRFISTLLTILLIISLLLTLLGILFAPPIVR   83 (451)
T ss_pred             hcCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-ccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            6665 57799999999998723444 468999999999999 889999999999988888777777755 5889999998


Q ss_pred             Hc--CCCHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHhHHHHHhhcCCC---hhhhH
Q 021881          133 FM--GQDKDITAMAATYTLYALPDLLTNTLLQPLRVFLRSQKVTKPMMWCTLVAVMFHVPLNYCLVMKLKLG---VPGVA  207 (306)
Q Consensus       133 ~~--~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~i~~~~~i~l~~~li~~~~~G---~~Ga~  207 (306)
                      .+  +.|++..+.+.+.+++..+..++.++..++.+++|+.+|...+....++.++.-++..+++..  ..|   +.+.+
T Consensus        84 ~la~g~~~~~~~la~~l~~i~~~~~~~~~l~~i~~a~L~~~~~F~~~~~~~l~~N~~~I~~~~~~~~--~~~~~~i~~la  161 (451)
T PF03023_consen   84 LLAPGFSPETIELAVQLLRILAPSILFIGLSSIFSAILNAHRRFLIPALSPLLFNLSIILSLLLLSN--SWGQENIYALA  161 (451)
T ss_pred             HHCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcchHHHHHHHHHHHHHHHHHHHHHH--hcCchHHHHHH
Confidence            88  457899999999999999999999999999999999999999999888887766665444444  567   88999


Q ss_pred             HHHHHHHHHHHHHHhhhhhh
Q 021881          208 MASVVCNLNMLKIGFSGLWF  227 (306)
Q Consensus       208 ~a~~i~~~~~~~~~~~~~~~  227 (306)
                      ++.+++..+..++..+..++
T Consensus       162 ~g~~~g~~~~~l~~l~~~~~  181 (451)
T PF03023_consen  162 WGVLIGAIIQFLIQLPYLRR  181 (451)
T ss_pred             HHHHHHHHHHHHHHHHHHHH
Confidence            99999999998876555553

Although frequently listed as a virulence protein, it is not restricted to pathogens and it is an essential protein in Sinorhizobium meliloti. In a number of species its gene is adjacent to that of the uridylyltransferase GlnD, the signal-transducing enzyme that performs the key modification to the nitrogen regulatory protein PII []. Disruption of the MviN open reading frame results in flagellar structures that contain only the basal body and hook complex that lack the flagellum; suggesting that MviN might be involved in flagellin export or assembly []. Genome comparison studies led to MviN being predicted to be a peptidoglycan lipid II flippase though currently there is no direct evidence to support this annotation [].

>COG0728 MviN Uncharacterized membrane protein, putative virulence factor [General function prediction only]

Probab=99.14  E-value=1.2e-07  Score=88.33  Aligned_cols=202  Identities=14%  Similarity=0.107  Sum_probs=157.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-cChh-hHHHHHHHHHHHHHHHHHHHH-HHHhhHHHHHHHHhcCCChhHH
Q 021881           26 KELWGMALPMTGMNILVFIRAVVSVLFLGR-LGSL-ELAGGALSIGFTNITGYSVLV-GLASGLEPVCSQAYGSKNWDLL  102 (306)
Q Consensus        26 k~~l~~~~P~~~~~~~~~~~~~~~~~~i~~-~g~~-~~a~~~~~~~i~~l~~~~~~~-gi~~a~~~~~s~~~g~~~~~~~  102 (306)
                      ++++|.+.-.+..++..-+.+.+-..+++. +|.. ...++.+++++-|++--.+.. +++++..|...++..+++.|+.
T Consensus         7 ~sllks~~~vs~~Tl~SRi~G~vRd~~iA~~fGa~~~aDAF~vAf~iPN~lRrlfaegafs~aFVPv~~~~~~~~~~~~~   86 (518)
T COG0728           7 MSLLKSLIIVSSATLLSRILGFVRDVLIAAAFGAGAAADAFFVAFKLPNLLRRLFAEGAFSSAFVPVLAEAKKKEGEEAA   86 (518)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHhHHHHHHHHhchhHhhhhhHHHHHHHHcchhhHH
Confidence            345566666667777777777775555555 8885 688999999999988444444 4799999999999988888888


Q ss_pred             HHHHHHHHHHHHHHHHHHHH-HHHhHHHHH-HHcCC--CHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCCchHHH
Q 021881          103 SLSLQRMILILFFAIIPISL-LWLNLETVM-IFMGQ--DKDITAMAATYTLYALPDLLTNTLLQPLRVFLRSQKVTKPMM  178 (306)
Q Consensus       103 ~~~~~~~~~~~~~~~i~~~~-~~~~~~~il-~~~~~--~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~g~~~~~~  178 (306)
                      ++..+........+.+.+++ ..++.++++ ..+..  |++....+....++..|..++.++.....+.+++.++...+.
T Consensus        87 ~~f~~~v~~~l~~~ll~vt~L~~l~~p~iv~~~~~~g~~~~~~~~a~~l~~i~~Pyl~~isL~al~~aiLNs~~~F~~~a  166 (518)
T COG0728          87 RFFSRLVTGLLTLVLLLVTLLGILFAPWLVRLLLAPGFDETDKFLAVLLTRILFPYLLFISLSALFGAILNSRNRFFIPA  166 (518)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCeechhh
Confidence            88888887666666666654 577777888 44443  344444788899999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHhHHHHHhhcCCChhhhHHHHHHHHHHHHHHHhhhhhh
Q 021881          179 WCTLVAVMFHVPLNYCLVMKLKLGVPGVAMASVVCNLNMLKIGFSGLWF  227 (306)
Q Consensus       179 ~~~~i~~~~~i~l~~~li~~~~~G~~Ga~~a~~i~~~~~~~~~~~~~~~  227 (306)
                      +.-+.-++.-+...+.+.++.+.-..+.++++.++-+.+.++.++.+|+
T Consensus       167 ~aPvl~Nv~~I~~~l~~~~~~~~~~~~La~gvl~Gg~~Q~l~~lp~l~~  215 (518)
T COG0728         167 FAPVLLNVSVIGLALFLGPYFDPPLLALAWGVLIGGLLQLLVQLPALRK  215 (518)
T ss_pred             hhHHHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            9998888777766666666544347788999999999999998777775

>PF01943 Polysacc_synt: Polysaccharide biosynthesis protein; InterPro: IPR002797 Members of this family are integral membrane proteins [], and many are implicated in the production of polysaccharide

Probab=99.06  E-value=6.4e-07  Score=77.26  Aligned_cols=248  Identities=17%  Similarity=0.145  Sum_probs=155.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhc-cChhhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhcCCChhHHHHHHH
Q 021881           29 WGMALPMTGMNILVFIRAVVSVLFLGR-LGSLELAGGALSIGFTNITGYSVLVGLASGLEPVCSQAYGSKNWDLLSLSLQ  107 (306)
Q Consensus        29 l~~~~P~~~~~~~~~~~~~~~~~~i~~-~g~~~~a~~~~~~~i~~l~~~~~~~gi~~a~~~~~s~~~g~~~~~~~~~~~~  107 (306)
                      +|-+.-...+++...+.+.+...++.| +|+++.+.++....+.++.......|++++.....++...+  .++.++...
T Consensus         2 ~k~~~~~~~~~~~~~~~~~~~~~il~r~l~~~~~G~~~~~~~~~~~~~~~~~~G~~~~~~r~~~~~~~~--~~~~~~~~~   79 (273)
T PF01943_consen    2 LKNSLWLFLSNILSALIGFITIPILARYLGPEEYGIYSLALSIVSLLSILADLGLSQAIVRFIAEYKDK--KELRSAYFS   79 (273)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHhHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhh--HHHHHHHHH
Confidence            456677788889999999999999999 99999999999999998873444788999988888887433  344444444


Q ss_pred             HHHHHHHHHHHHHHHHHHhHHHHHHHcCCCHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHH
Q 021881          108 RMILILFFAIIPISLLWLNLETVMIFMGQDKDITAMAATYTLYALPDLLTNTLLQPLRVFLRSQKVTKPMMWCTLVAVMF  187 (306)
Q Consensus       108 ~~~~~~~~~~i~~~~~~~~~~~il~~~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~i~~~~  187 (306)
                      .......+.++...+...    +...+..++ ...   .+........+..........++++.++.+.....++...+.
T Consensus        80 ~~~~~~~~~~~i~~~~~~----~~~~~~~~~-~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  151 (273)
T PF01943_consen   80 SVLFLLLIFSLIFLLILL----IASFFGNPS-LSL---ILIILALLILILSSLSSVFSGLLQGLQRFKYIAISNIISSLL  151 (273)
T ss_pred             HHHHHHHHHHHHHHHHHH----HHHHcCCch-HHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            444444333333322222    212344333 221   122222222257888888999999999999999999999888


Q ss_pred             HHHhHHHHHhhcCCChhhhHHHHHHHHHHHHHHHhhhhhhhhHHhhhhhhhhhhheeeecccchHHHHHHhhhhHH----
Q 021881          188 HVPLNYCLVMKLKLGVPGVAMASVVCNLNMLKIGFSGLWFGLLSAQAACAVSILYVVLVRTDWEAEAMKAMKLTSL----  263 (306)
Q Consensus       188 ~i~l~~~li~~~~~G~~Ga~~a~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----  263 (306)
                      .+++...+... +.++.+..++..++..+..++......+.              .+..+.+.+++..++..+...    
T Consensus       152 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------~~~~~~~~~~~~~~~~~~~~~~~~~  216 (273)
T PF01943_consen  152 SLLLILLLLFL-GSSLWGFLLGLVISSLVSLIISLFYLRRK--------------LRPRFSFFSKKFFKEILRFGLPLFL  216 (273)
T ss_pred             HHHHHHHHHHH-hhhHHHHHHHHHHHHHHHHHHHHHHHHHH--------------HcccccccchHHHHHHHHHHHHHHH
Confidence            88777666654 34578888888888887765521111110              001111111222222111110    


Q ss_pred             ---------HHHHHHhhcCCCchhhHHHHHHHHhhhhHHHHHhhhhhc
Q 021881          264 ---------EISTFNAGAGDTNEEEEEEESKGLLLYGICFRLLDAFFS  302 (306)
Q Consensus       264 ---------~~~~~~~~~~~~~~~~~a~~~i~~~i~~~~~~~~~~~~~  302 (306)
                               ....+.. ..-.|+++++-++++.++.....++..++.+
T Consensus       217 ~~~~~~~~~~~d~~ii-~~~~g~~~vg~Y~~a~~l~~~~~~~~~~~~~  263 (273)
T PF01943_consen  217 SSLLSWLYSQIDRLII-GYFLGPEAVGIYSVAYRLASAISFLLSSIST  263 (273)
T ss_pred             HHHHHHHHHHhHHHHH-HHhCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence                     0000100 1124888999999999999988888877664

The family includes RfbX part of the O antigen biosynthesis operon [], and SpoVB from Bacillus subtilis (Q00758 from SWISSPROT), which is involved in spore cortex biosynthesis [].; GO: 0000271 polysaccharide biosynthetic process, 0016020 membrane

>PF13440 Polysacc_synt_3: Polysaccharide biosynthesis protein

Probab=98.94  E-value=2.5e-06  Score=72.80  Aligned_cols=162  Identities=18%  Similarity=0.228  Sum_probs=111.4

Q ss_pred             HHHHHHHHHhc-cChhhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHHHHHHHH
Q 021881           45 RAVVSVLFLGR-LGSLELAGGALSIGFTNITGYSVLVGLASGLEPVCSQAYGSKNWDLLSLSLQRMILILFFAIIPISLL  123 (306)
Q Consensus        45 ~~~~~~~~i~~-~g~~~~a~~~~~~~i~~l~~~~~~~gi~~a~~~~~s~~~g~~~~~~~~~~~~~~~~~~~~~~i~~~~~  123 (306)
                      .+.+...+++| +|+++.|.|+....+..+.......|+.+....     ..++|+++.++..+.......+.++...++
T Consensus         3 ~~f~~~~~lar~l~~~~~G~~~~~~s~~~~~~~~~~~g~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   77 (251)
T PF13440_consen    3 INFLFLILLARYLGPEDFGIYALIFSIVSILSIVASLGLRQSLVR-----SAARDKQDIRSLLRFSLLVSLLLAVILAIL   77 (251)
T ss_pred             HHHHHHHHHHHHCCHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH-----hhccCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            45667788888 999999999999999887723334555554433     234666777777776665554444443322


Q ss_pred             HHhHHHHHHHcCCCHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHhHHHHHhhcCCCh
Q 021881          124 WLNLETVMIFMGQDKDITAMAATYTLYALPDLLTNTLLQPLRVFLRSQKVTKPMMWCTLVAVMFHVPLNYCLVMKLKLGV  203 (306)
Q Consensus       124 ~~~~~~il~~~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~i~~~~~i~l~~~li~~~~~G~  203 (306)
                         ...+...+ ++++..    .++....+..+.........+.+++.+|.+..........++...+...+... +.+.
T Consensus        78 ---~~~~~~~~-~~~~~~----~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~  148 (251)
T PF13440_consen   78 ---AILIAYFF-GDPELF----WLLLLLALAIFFSALSQLFRSILRARGRFRAYALIDIVRSLLRLLLLVLLLYL-GLNL  148 (251)
T ss_pred             ---HHHHHHHh-CChhHH----HHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHHHHH-HhhH
Confidence               11111233 444332    36667778888899999999999999999999999999988775544444433 4478


Q ss_pred             hhhHHHHHHHHHHHHHH
Q 021881          204 PGVAMASVVCNLNMLKI  220 (306)
Q Consensus       204 ~Ga~~a~~i~~~~~~~~  220 (306)
                      .+..++..++..+..++
T Consensus       149 ~~~~~~~~~~~~~~~~~  165 (251)
T PF13440_consen  149 WSILLAFIISALLALLI  165 (251)
T ss_pred             HHHHHHHHHHHHHHHHH
Confidence            88888888888877654

>PRK10459 colanic acid exporter; Provisional

Probab=98.92  E-value=1.1e-06  Score=82.98  Aligned_cols=180  Identities=11%  Similarity=0.072  Sum_probs=130.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-cChhhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhcCCChhHHHH
Q 021881           26 KELWGMALPMTGMNILVFIRAVVSVLFLGR-LGSLELAGGALSIGFTNITGYSVLVGLASGLEPVCSQAYGSKNWDLLSL  104 (306)
Q Consensus        26 k~~l~~~~P~~~~~~~~~~~~~~~~~~i~~-~g~~~~a~~~~~~~i~~l~~~~~~~gi~~a~~~~~s~~~g~~~~~~~~~  104 (306)
                      ++..+-+....++++.....+.+....++| +|+++.+.++.+..+.++.......|++++..    |. .+++.    +
T Consensus         5 ~~~~~g~~w~~~~~~~~~~~~~i~~~ilaR~L~p~~~G~~~~~~~~~~~~~~~~~~Gl~~aii----~~-~~~~~----~   75 (492)
T PRK10459          5 EKTISGAKWTAISTVIIIGLQLVQLTVLARILDNHQFGLLTMSLVIIGFADTLSDMGIGASII----QR-QDISH----L   75 (492)
T ss_pred             HHHHccccHHHHHHHHHHHHHHHHHHHHHHhCCHHHccHHHHHHHHHHHHHHHHHcCHHHHHH----hc-ccCCH----H
Confidence            456666777888999999999999999999 99999999999999988763344456766542    22 12222    3


Q ss_pred             HHHHHHHHHHHHHHHHHH-HHHhHHHHHHHcCCCHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCCchHHHHHHHH
Q 021881          105 SLQRMILILFFAIIPISL-LWLNLETVMIFMGQDKDITAMAATYTLYALPDLLTNTLLQPLRVFLRSQKVTKPMMWCTLV  183 (306)
Q Consensus       105 ~~~~~~~~~~~~~i~~~~-~~~~~~~il~~~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~i  183 (306)
                      ............++...+ .+.+.+++...+ ++|+..    ..+++.++..++..+.....+.++...+.+.......+
T Consensus        76 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~-~~~~~~----~~~~~~~~~~~~~~~~~~~~~~l~r~~~f~~~a~~~~~  150 (492)
T PRK10459         76 QLSTLYWLNVGLGIVVFVLVFLLSPLIADFY-HNPELA----PLIKTLSLAFVIIPIGQQFRALLQKELEFNKLAKIEIS  150 (492)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-CChhhH----HHHHHHHHHHHHHHHhhHHHHHHHHHhhhHHHHHHHHH
Confidence            334445555666655544 455555555554 455433    47788888888888999999999999999998888888


Q ss_pred             HHHHHHHhHHHHHhhcCCChhhhHHHHHHHHHHHHHH
Q 021881          184 AVMFHVPLNYCLVMKLKLGVPGVAMASVVCNLNMLKI  220 (306)
Q Consensus       184 ~~~~~i~l~~~li~~~~~G~~Ga~~a~~i~~~~~~~~  220 (306)
                      ..+........+.. .+.|+.+..++..++..+..++
T Consensus       151 ~~i~~~~~~i~~~~-~~~g~~~l~~~~~~~~~~~~l~  186 (492)
T PRK10459        151 AVVAGFTFAVVSAF-FWPGALAAILGYLVNSSVRTLL  186 (492)
T ss_pred             HHHHHHHHHHHHHH-HCCcHHHHHHHHHHHHHHHHHH
Confidence            87777766665544 3788999999999888776543

>PF04506 Rft-1: Rft protein; InterPro: IPR007594 Asymmetric lipid distribution is a fundamental characteristic of biological lipid bilayers, one such axample is the translocation of the Man5GlcNAc2-PP-Dol intermediate from the cytosolic side of the ER membrane to the lumen before the completion of the biosynthesis of Glc3Man9GlcNAc2-PP-Dol []

Probab=98.68  E-value=2.8e-06  Score=80.51  Aligned_cols=195  Identities=12%  Similarity=0.039  Sum_probs=158.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc---cChhhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhcCCCh--
Q 021881           25 LKELWGMALPMTGMNILVFIRAVVSVLFLGR---LGSLELAGGALSIGFTNITGYSVLVGLASGLEPVCSQAYGSKNW--   99 (306)
Q Consensus        25 ~k~~l~~~~P~~~~~~~~~~~~~~~~~~i~~---~g~~~~a~~~~~~~i~~l~~~~~~~gi~~a~~~~~s~~~g~~~~--   99 (306)
                      -++.++.......+.+...+.+--|.+++..   .+.++.|.|++++++.++..-.+...+-.+.-...++....++.  
T Consensus       252 d~~~l~l~~~~~~Qsi~K~lLTEGdk~vl~~~~~~t~~~QGvY~lv~N~GSLvaR~lF~PiEEs~~~~Fsk~l~~~~~~~  331 (549)
T PF04506_consen  252 DRDLLSLTWSFFFQSILKHLLTEGDKLVLSFFNLLTFEDQGVYALVSNYGSLVARLLFQPIEESSRLYFSKLLSRDNSKK  331 (549)
T ss_pred             CHHHHHHHHHHHHHHHHHHHHhhCCeEEEEeeccCCHHHhhHHHHHhhHHHHHHHHHhCcHHHHHHHHHHHHhcccCchh
Confidence            4678889999999999999999999999998   45678999999999999987888889999999999998755433  


Q ss_pred             -------hHHHHHHHHHHHHHHHHHHHHHHH-HHhHHHHHHHcCCCHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHc
Q 021881          100 -------DLLSLSLQRMILILFFAIIPISLL-WLNLETVMIFMGQDKDITAMAATYTLYALPDLLTNTLLQPLRVFLRSQ  171 (306)
Q Consensus       100 -------~~~~~~~~~~~~~~~~~~i~~~~~-~~~~~~il~~~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~  171 (306)
                             +++.+.+...+++...+++++..+ ...++.++.++.+++=....+...+++++...|+.+++.++..+.++.
T Consensus       332 ~~~~~~~~~~~~~l~~ll~~~~~~gl~~~~fG~~~s~~lL~~~~g~~w~~~~~~~~l~~yc~yi~~la~NGi~EaF~~s~  411 (549)
T PF04506_consen  332 KQPQESLKQAANVLSNLLKFYLYLGLVIVAFGPPYSPLLLRLLGGSRWSSTSAPSLLRAYCYYIPFLAINGITEAFVFSV  411 (549)
T ss_pred             hccchhHHHHHHHHHHHHHHHHHHHHHHHHhChhhHHHHHHHHhhhcccCCCchHHHHHHHHHHHHHHHccHHHHHHHHh
Confidence                   456777888888888888777554 777788887775443233345679999999999999999999999998


Q ss_pred             CCchHHHH---HHHHHHHHHHHhHHHHHhhcCCChhhhHHHHHHHHHHHHHH
Q 021881          172 KVTKPMMW---CTLVAVMFHVPLNYCLVMKLKLGVPGVAMASVVCNLNMLKI  220 (306)
Q Consensus       172 g~~~~~~~---~~~i~~~~~i~l~~~li~~~~~G~~Ga~~a~~i~~~~~~~~  220 (306)
                      .+.+-...   .+.+..++.+..+++++.+ ++|..|..+|+++.+.+..+.
T Consensus       412 a~~~~l~~~~~~m~~~S~~f~~~~~~l~~~-~~G~~GlI~AN~iNM~lRI~y  462 (549)
T PF04506_consen  412 ASESQLDRYNYWMVVFSAIFLAASYLLTRW-GLGAVGLILANCINMSLRIIY  462 (549)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHHHHHHHhc-cCCCchHHHHHHHHHHHHHHH
Confidence            87655443   3344446778888999887 799999999999998888766

RFT1 encodes an evolutionarily conserved protein required for this translocation.; GO: 0005319 lipid transporter activity, 0006869 lipid transport, 0016021 integral to membrane

>COG2244 RfbX Membrane protein involved in the export of O-antigen and teichoic acid [General function prediction only]

Probab=98.47  E-value=4.1e-05  Score=72.06  Aligned_cols=151  Identities=17%  Similarity=0.155  Sum_probs=116.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-cChhhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhcCCChhHH
Q 021881           24 ELKELWGMALPMTGMNILVFIRAVVSVLFLGR-LGSLELAGGALSIGFTNITGYSVLVGLASGLEPVCSQAYGSKNWDLL  102 (306)
Q Consensus        24 ~~k~~l~~~~P~~~~~~~~~~~~~~~~~~i~~-~g~~~~a~~~~~~~i~~l~~~~~~~gi~~a~~~~~s~~~g~~~~~~~  102 (306)
                      ..++..|-+.-...+++...+...+....++| +|+++.+.++.+..+..++......|+..+....++++.++++++..
T Consensus         4 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~lar~lg~~~~G~~~~~~~~~~~~~~i~~~G~~~ai~r~ia~~~~~~~~~~~   83 (480)
T COG2244           4 LKKKLIKGALWLLLGTLISALLGLITIPLLARLLGPEGFGLYALALAIIGLFSILADFGLPAAITREIAEYREKGEYLLL   83 (480)
T ss_pred             HHHHHHhhchHHHHHHHHHHHHHHHHHHHHHHHhCcccceeeehHHHHHHHHHHHHHcCCcHHHHHHHHHhhcccHHHHH
Confidence            45677788888889999999999999999999 99999999999999999984444489999999999998877766666


Q ss_pred             HHH-HHHHHHHHHHHHHHHHHHHHhHHHHHHHcCCCHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCCchHHHHHH
Q 021881          103 SLS-LQRMILILFFAIIPISLLWLNLETVMIFMGQDKDITAMAATYTLYALPDLLTNTLLQPLRVFLRSQKVTKPMMWCT  181 (306)
Q Consensus       103 ~~~-~~~~~~~~~~~~i~~~~~~~~~~~il~~~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~  181 (306)
                      +.. ...........+.+.........+.      +++    ....+++..++.+.........+.+|+.++.+......
T Consensus        84 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~------~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  153 (480)
T COG2244          84 ILLSVLLLLLLALILLLLLLLIAYLLAPI------DPV----LALLLRILSLALLLLPLSSVLRGLFQGFGRFGPLALSI  153 (480)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhccc------Chh----hHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccchhHH
Confidence            666 5555555555555544333333332      333    33377889999999999999999999999999998884


Q ss_pred             HHH
Q 021881          182 LVA  184 (306)
Q Consensus       182 ~i~  184 (306)
                      ..+
T Consensus       154 ~~~  156 (480)
T COG2244         154 VSS  156 (480)
T ss_pred             HHH
Confidence            444

>PF14667 Polysacc_synt_C: Polysaccharide biosynthesis C-terminal domain

Probab=98.46  E-value=1.5e-06  Score=68.02  Aligned_cols=71  Identities=24%  Similarity=0.344  Sum_probs=67.6

Q ss_pred             HHHHHhhHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHhHHHHHhhcCCChhhhHHHHHHHHHHHHHH
Q 021881          148 TLYALPDLLTNTLLQPLRVFLRSQKVTKPMMWCTLVAVMFHVPLNYCLVMKLKLGVPGVAMASVVCNLNMLKI  220 (306)
Q Consensus       148 l~i~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~i~~~~~i~l~~~li~~~~~G~~Ga~~a~~i~~~~~~~~  220 (306)
                      +++.+++.++..+.....+.+++.||+|..++.++++.++|+++++++++  ++|..|+++|+.+++...+.+
T Consensus         2 l~il~~~~~~~~l~~~~~~il~~~~k~~~~~~~~~~~~~v~i~~~~~li~--~~G~~Gaa~a~~i~~~~~~~~   72 (146)
T PF14667_consen    2 LQILALAIIFMGLSQPLGSILQAMGKTKWPFIITLIGAIVNIILNYILIP--RFGIYGAAIATAISEIVSFIL   72 (146)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHHHHHHH--HHHHhHHHHHHHHHHHHHHHH
Confidence            57889999999999999999999999999999999999999999999988  799999999999999998866

>PF07260 ANKH: Progressive ankylosis protein (ANKH); InterPro: IPR009887 This family consists of several progressive ankylosis protein (ANK or ANKH) sequences

Probab=98.14  E-value=0.0026  Score=55.28  Aligned_cols=167  Identities=13%  Similarity=0.027  Sum_probs=120.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccChh---hHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhcCCC
Q 021881           22 VEELKELWGMALPMTGMNILVFIRAVVSVLFLGRLGSL---ELAGGALSIGFTNITGYSVLVGLASGLEPVCSQAYGSKN   98 (306)
Q Consensus        22 ~~~~k~~l~~~~P~~~~~~~~~~~~~~~~~~i~~~g~~---~~a~~~~~~~i~~l~~~~~~~gi~~a~~~~~s~~~g~~~   98 (306)
                      ...+.++.++-.|..++.+...+...+.+.-+++-.++   .+|+|+++..+.-++ ..+...+-.....++-+     +
T Consensus         7 ~~~y~~li~F~iPLa~ts~~~dl~~qiiNagLAr~~e~~vetLAsfglA~sL~lf~-~sp~~~~~~igl~~V~s-----~   80 (345)
T PF07260_consen    7 LTSYWPLIRFFIPLAITSLAMDLGEQIINAGLARVQEDPVETLASFGLAYSLMLFF-ASPLSMFHHIGLVFVNS-----K   80 (345)
T ss_pred             cchHHHHHHHHHHHHHHHHHHhccHHHHHHHHhhccchHHHHHHHHHHHHHHHHHH-hChhhhhHHHHHHHhcc-----h
Confidence            35778899999999999999999999999999884332   499999999998887 78887777666666533     2


Q ss_pred             hhHHHHHHHHHHHHHHHH-HHHHHHH-HHhH-HHHH-HHcCCCHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCCc
Q 021881           99 WDLLSLSLQRMILILFFA-IIPISLL-WLNL-ETVM-IFMGQDKDITAMAATYTLYALPDLLTNTLLQPLRVFLRSQKVT  174 (306)
Q Consensus        99 ~~~~~~~~~~~~~~~~~~-~i~~~~~-~~~~-~~il-~~~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~g~~  174 (306)
                      .+  ++....++..+... .....++ +--. ..++ +.++.+|++.+.++..+.++.+.-.++++....++++-=.+++
T Consensus        81 rs--rr~~vl~~~vag~v~avi~~LIa~TpLG~~li~~lhgVs~~va~~tr~a~l~L~llPfl~alr~~~qGILik~r~s  158 (345)
T PF07260_consen   81 RS--RRKAVLCMAVAGAVAAVIHLLIAWTPLGNYLINDLHGVSPSVAEKTRRAFLYLTLLPFLDALRWIHQGILIKHRHS  158 (345)
T ss_pred             hh--hHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhhccce
Confidence            22  22222222222222 2222222 2222 3333 6778999999999999999999999999999999999877777


Q ss_pred             hHHHHHHHHHHHHHHHhHHHHH
Q 021881          175 KPMMWCTLVAVMFHVPLNYCLV  196 (306)
Q Consensus       175 ~~~~~~~~i~~~~~i~l~~~li  196 (306)
                      ......++...+..+++..++.
T Consensus       159 ~iV~~aSI~~v~~qvV~v~~ll  180 (345)
T PF07260_consen  159 WIVGSASIADVIAQVVLVAILL  180 (345)
T ss_pred             eEeehHHHHHHHHHHHHHHHHH
Confidence            7777777766666666555555

The ANK protein spans the outer cell membrane and shuttles inorganic pyrophosphate (PPi), a major inhibitor of physiologic and pathologic calcification, bone mineralisation and bone resorption []. Mutations in ANK are thought to give rise to Craniometaphyseal dysplasia (CMD) which is a rare skeletal disorder characterised by progressive thickening and increased mineral density of craniofacial bones and abnormally developed metaphyses in long bones [].; GO: 0015114 phosphate ion transmembrane transporter activity, 0035435 phosphate ion transmembrane transport, 0016021 integral to membrane

>KOG2864 consensus Nuclear division RFT1 protein [Cell cycle control, cell division, chromosome partitioning]

Probab=98.02  E-value=0.0005  Score=62.27  Aligned_cols=192  Identities=9%  Similarity=0.042  Sum_probs=141.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhc---cChhhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhcCCChhHHH
Q 021881           27 ELWGMALPMTGMNILVFIRAVVSVLFLGR---LGSLELAGGALSIGFTNITGYSVLVGLASGLEPVCSQAYGSKNWDLLS  103 (306)
Q Consensus        27 ~~l~~~~P~~~~~~~~~~~~~~~~~~i~~---~g~~~~a~~~~~~~i~~l~~~~~~~gi~~a~~~~~s~~~g~~~~~~~~  103 (306)
                      +..+.......+.+...+.+--|.++++.   ++-++.|.|.+.+++.++.+-.+...+-.......+|....++.|+.|
T Consensus       240 d~~~~~~s~~~Qs~lKqlLTeGdkyvmt~~~~ls~~~QgvYd~v~n~GSLlaR~iF~PIEEss~~~FA~~ls~~~qe~~k  319 (530)
T KOG2864|consen  240 DLLKLTKSFTFQSFLKQLLTEGDKYVMTFTELLSFGDQGVYDLVSNYGSLLARLIFRPIEESSYIYFARLLSRDNQENVK  319 (530)
T ss_pred             HHHHHHHHHHHHHHHHHHhhcccceeEeeeccCCcchhhHHHHHHhhhhHHHHHHhChhHHHHHHHHHHHhhccchhhHH
Confidence            34445555666777777778888888873   566788999999999998878888899999999999988777776666


Q ss_pred             HHHH---HHHHHHHHHHHHHHHH-HHhHHHHHHHcCCCHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCCchHHH-
Q 021881          104 LSLQ---RMILILFFAIIPISLL-WLNLETVMIFMGQDKDITAMAATYTLYALPDLLTNTLLQPLRVFLRSQKVTKPMM-  178 (306)
Q Consensus       104 ~~~~---~~~~~~~~~~i~~~~~-~~~~~~il~~~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~g~~~~~~-  178 (306)
                      +...   ..++....+++..+.. ...+++.+.++++++=....+...+++++...|+.+++.+..++..+.++.+-.- 
T Consensus       320 ~a~~vL~~lLklv~~igli~~~FG~~YS~~vL~lygG~kwss~~~~~lL~~YclYI~~lAiNGitEaF~~A~~t~~qi~~  399 (530)
T KOG2864|consen  320 KAVDVLSNLLKLVIYIGLIFITFGPAYSYVVLLLYGGSKWSSGGGSLLLSWYCLYIPFLAINGITEAFAFAVATSRQIDK  399 (530)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhhcCccccHHHHHHHcCccccCCCchHHHHHHHHHHHHHHhccHHHHHHHHhccHHHHHh
Confidence            6554   4444455555444333 5666777787766443333444689999999999999999999999987655443 


Q ss_pred             --HHHHHHHHHHHHhHHHHHhhcCCChhhhHHHHHHHHHHHHHH
Q 021881          179 --WCTLVAVMFHVPLNYCLVMKLKLGVPGVAMASVVCNLNMLKI  220 (306)
Q Consensus       179 --~~~~i~~~~~i~l~~~li~~~~~G~~Ga~~a~~i~~~~~~~~  220 (306)
                        +..+...++.++++|+++.  .+|..|.-+|.++.+.+....
T Consensus       400 ~n~~mlafSviflilsylL~~--~~~~~GlIlANiiNm~lRIly  441 (530)
T KOG2864|consen  400 HNKFMLAFSVIFLILSYLLIR--WFGLVGLILANIINMSLRILY  441 (530)
T ss_pred             cccchhHHHHHHHHHHHHHHH--HhchhHHHHHHHHHHHHHHHH
Confidence              3445555778889999998  467788888888887766654

>PF01943 Polysacc_synt: Polysaccharide biosynthesis protein; InterPro: IPR002797 Members of this family are integral membrane proteins [], and many are implicated in the production of polysaccharide

Probab=97.91  E-value=9.9e-05  Score=63.48  Aligned_cols=73  Identities=18%  Similarity=0.266  Sum_probs=68.9

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-cChhhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHh
Q 021881           21 VVEELKELWGMALPMTGMNILVFIRAVVSVLFLGR-LGSLELAGGALSIGFTNITGYSVLVGLASGLEPVCSQAY   94 (306)
Q Consensus        21 ~~~~~k~~l~~~~P~~~~~~~~~~~~~~~~~~i~~-~g~~~~a~~~~~~~i~~l~~~~~~~gi~~a~~~~~s~~~   94 (306)
                      +++..|++++.+.|..++++...+....|+.++++ .|++++|.|+++.++.... ..+...+.+...|..++.+
T Consensus       200 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~ii~~~~g~~~vg~Y~~a~~l~~~~-~~~~~~~~~~~~P~~s~l~  273 (273)
T PF01943_consen  200 SKKFFKEILRFGLPLFLSSLLSWLYSQIDRLIIGYFLGPEAVGIYSVAYRLASAI-SFLLSSISTVLFPRLSRLW  273 (273)
T ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhCCHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHhC
Confidence            47899999999999999999999999999999999 8999999999999999998 9999999999999999863

The family includes RfbX part of the O antigen biosynthesis operon [], and SpoVB from Bacillus subtilis (Q00758 from SWISSPROT), which is involved in spore cortex biosynthesis [].; GO: 0000271 polysaccharide biosynthetic process, 0016020 membrane

>PF13440 Polysacc_synt_3: Polysaccharide biosynthesis protein

Probab=97.32  E-value=0.002  Score=54.73  Aligned_cols=65  Identities=15%  Similarity=0.257  Sum_probs=61.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhc-cChhhHHHHHHHHHHHHHHHH-HHHHHHHhhHHHHHHH
Q 021881           27 ELWGMALPMTGMNILVFIRAVVSVLFLGR-LGSLELAGGALSIGFTNITGY-SVLVGLASGLEPVCSQ   92 (306)
Q Consensus        27 ~~l~~~~P~~~~~~~~~~~~~~~~~~i~~-~g~~~~a~~~~~~~i~~l~~~-~~~~gi~~a~~~~~s~   92 (306)
                      +.++.+.|..++++........|.++++. +|++++|.|+++.++...+ . .+..++++...|..+|
T Consensus       184 ~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~~~g~y~~a~~l~~~~-~~~~~~~i~~~~~p~lar  250 (251)
T PF13440_consen  184 RLLKYGLPFSLSSLLSWLLSQIDRLLIGYFLGPEAVGIYSVAQRLASLP-ASLLSSAISSVFFPKLAR  250 (251)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHhC
Confidence            37999999999999999999999999999 9999999999999999987 6 8999999999999887

>COG4267 Predicted membrane protein [Function unknown]

Probab=81.05  E-value=44  Score=30.50  Aligned_cols=130  Identities=16%  Similarity=0.174  Sum_probs=88.3

Q ss_pred             HHHHHHHHhhHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHcCCCHHHHHHHHHHHHHHHhhH
Q 021881           76 YSVLVGLASGLEPVCSQAYGSKNWDLLSLSLQRMILILFFAIIPISLLWLNLETVMIFMGQDKDITAMAATYTLYALPDL  155 (306)
Q Consensus        76 ~~~~~gi~~a~~~~~s~~~g~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~il~~~~~~~~~~~~~~~~l~i~~~~~  155 (306)
                      ..+..|+....+-.+|...=++|++++...+.-...+....+..+..       ++-...+|+.     ..|=...+...
T Consensus        74 ~IiTgg~q~iiTRfiSD~lF~k~~~kIlpsy~Gvi~lv~~~a~~ig~-------~vf~~~~~~s-----i~yk~l~~~~F  141 (467)
T COG4267          74 QIITGGFQLIITRFISDCLFEKKQRKILPSYIGVILLVTLVAGVIGL-------IVFFVNNQYS-----IVYKILACALF  141 (467)
T ss_pred             HHHhhhHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHH-------HhhhhcCchh-----HHHHHHHHHHH
Confidence            44556777778888888777777777777666555544444433321       1111122221     11333444555


Q ss_pred             HHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHhHHHHHhhcCCChhhhHHHHHHHHHHHHHH
Q 021881          156 LTNTLLQPLRVFLRSQKVTKPMMWCTLVAVMFHVPLNYCLVMKLKLGVPGVAMASVVCNLNMLKI  220 (306)
Q Consensus       156 ~~~~~~~~~~~~l~~~g~~~~~~~~~~i~~~~~i~l~~~li~~~~~G~~Ga~~a~~i~~~~~~~~  220 (306)
                      ...+..-....++.+.+|.|.....-.++.++.+.+..++-.   .+..|.-++..++.......
T Consensus       142 V~m~~~Wi~~iFlS~lK~y~~iv~sF~iG~~~sv~La~~~~~---~~ie~lLL~~~IGi~~i~~l  203 (467)
T COG4267         142 VGMSLVWILMIFLSGLKKYKLIVLSFFIGYVVSVLLARLFLK---SPIEGLLLTLDIGIFIILFL  203 (467)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---hHHHHHHHHHHHhHHHHHHH
Confidence            666777778889999999999999999999999988887764   68999999999988877655

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	306
3mkt_A	460	Structure Of A Cation-Bound Multidrug And Toxin Com		8e-04

>pdb|3MKT|A Chain A, Structure Of A Cation-Bound Multidrug And Toxin Compound Extrusion (Mate) Transporter Length = 460

Iteration: 1
 Score = 41.2 bits (95), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 28/125 (22%), Positives = 52/125 (41%), Gaps = 1/125 (0%)
Query: 80  VGLASGLEPVCSQAYGSKNWDLLSLSLQRMILILFFAIIPISLLWLNLETVMIFMGQDKD 139
           VGL   L PV +Q  G+     +   + + +++     +PI  +    + ++ FM  ++ 
Sbjct: 65  VGLLMALVPVVAQLNGAGRQHKIPFEVHQGLILALLVSVPIIAVLFQTQFIIRFMDVEEA 124
Query: 140 IXXXXXXXXXXXXPDLLTNTLLQPLRVFLRSQKVTKPMMWCTLVAVMFHVPLNYCLVMKL 199
           +              +    L Q LR F     +TKP M    + ++ ++PLN+  V   
Sbjct: 125 MATKTVGYMHAVIFAVPAYLLFQALRSFTDGMSLTKPAMVIGFIGLLLNIPLNWIFVYG- 183
Query: 200 KLGVP 204
           K G P
Sbjct: 184 KFGAP 188

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	306
3mkt_A	460	Multi antimicrobial extrusion protein (Na(+)/drug	1e-36
3mkt_A	460	Multi antimicrobial extrusion protein (Na(+)/drug	3e-09

>3mkt_A Multi antimicrobial extrusion protein (Na(+)/drug antiporter) MATE-like MDR efflux...; multidrug transporter, cation-bound, transport protein; 3.65A {Vibrio cholerae} PDB: 3mku_A Length = 460

 Score =  135 bits (342), Expect = 1e-36
 Identities = 40/206 (19%), Positives = 84/206 (40%), Gaps = 5/206 (2%)

Query: 17  SFSQVVEELKELWGMALPMTGMNILVFIRAVVSVLFLGRLGSLELAGGALSIGFTNITGY 76
           S  +  +E   L  +A P+   ++       V  +  G + ++++A  +++         
Sbjct: 3   SVHRYKKEASNLIKLATPVLIASVAQTGMGFVDTIMAGGVSAIDMAAVSIAASIWL-PSI 61

Query: 77  SVLVGLASGLEPVCSQAYGSKNWDLLSLSLQRMILILFFAIIPISLLWLNLETVMIFMGQ 136
              VGL   L PV +Q  G+     +   + + +++     +PI  +    + ++ FM  
Sbjct: 62  LFGVGLLMALVPVVAQLNGAGRQHKIPFEVHQGLILALLVSVPIIAVLFQTQFIIRFMDV 121

Query: 137 DKDITAMAATYTLYALPDLLTNTLLQPLRVFLRSQKVTKPMMWCTLVAVMFHVPLNYCLV 196
           ++ +      Y    +  +    L Q LR F     +TKP M    + ++ ++PLN+  V
Sbjct: 122 EEAMATKTVGYMHAVIFAVPAYLLFQALRSFTDGMSLTKPAMVIGFIGLLLNIPLNWIFV 181

Query: 197 MKL----KLGVPGVAMASVVCNLNML 218
                  +LG  G  +A+ +    ML
Sbjct: 182 YGKFGAPELGGVGCGVATAIVYWIML 207

>3mkt_A Multi antimicrobial extrusion protein (Na(+)/drug antiporter) MATE-like MDR efflux...; multidrug transporter, cation-bound, transport protein; 3.65A {Vibrio cholerae} PDB: 3mku_A Length = 460

 Score = 56.9 bits (138), Expect = 3e-09
 Identities = 37/225 (16%), Positives = 83/225 (36%), Gaps = 23/225 (10%)

Query: 23  EELKELWGMALPMTGMNILVFIRAVVSVLFLGRLGSLELAGGALSIGFTNITGYSVLVGL 82
           +EL  L+ +  P+            V  L +  LGS  +A   +++ F+++  +   + +
Sbjct: 235 KELIRLFRLGFPVAAALFFEVTLFAVVALLVAPLGSTVVAAHQVALNFSSLV-FMFPMSI 293

Query: 83  ASGLEPVCSQAYGSKNWDLLSLSLQR-MILILFFAIIPISLLWLNLETVMIFMGQDKDIT 141
            + +        G ++    +++    ++  L  A I   L  L  E + +   +++ + 
Sbjct: 294 GAAVSIRVGHKLGEQDTKGAAIAANVGLMTGLATACITALLTVLFREQIALLYTENQVVV 353

Query: 142 AMAATYTLYA----LPDLLTNTLLQPLRVFLRSQKVTKPMMWCTLVAVMFHVPLNYCLVM 197
           A+A    L+A      D +           LR  K    +   T ++        Y ++ 
Sbjct: 354 ALAMQLLLFAAIYQCMDAVQVVAAG----SLRGYKDMTAIFHRTFIS--------YWVL- 400

Query: 198 KLKLGVPGVAMASVVCNLNMLKIGFSGLWFGLLSAQAACAVSILY 242
               G+P   +  +   L    +G  G W G +   +A A+ +  
Sbjct: 401 ----GLPTGYILGMTNWLTEQPLGAKGFWLGFIIGLSAAALMLGQ 441

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	306
3mkt_A	460	Multi antimicrobial extrusion protein (Na(+)/drug	99.95
3mkt_A	460	Multi antimicrobial extrusion protein (Na(+)/drug	99.93

>3mkt_A Multi antimicrobial extrusion protein (Na(+)/drug antiporter) MATE-like MDR efflux...; multidrug transporter, cation-bound, transport protein; 3.65A {Vibrio cholerae} PDB: 3mku_A

Probab=99.95  E-value=4.7e-27  Score=217.44  Aligned_cols=274  Identities=15%  Similarity=0.199  Sum_probs=225.1

Q ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccChhhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhcCCC
Q 021881           19 SQVVEELKELWGMALPMTGMNILVFIRAVVSVLFLGRLGSLELAGGALSIGFTNITGYSVLVGLASGLEPVCSQAYGSKN   98 (306)
Q Consensus        19 ~~~~~~~k~~l~~~~P~~~~~~~~~~~~~~~~~~i~~~g~~~~a~~~~~~~i~~l~~~~~~~gi~~a~~~~~s~~~g~~~   98 (306)
                      +..++..|++++.++|.+++++...+.+.+|+.+++++|++++++++++.++.++. ..+..+++.+..|.++|++|++|
T Consensus         5 ~~~~~~~k~~~~~~~p~~~~~~~~~~~~~v~~~~~~~lg~~~~~~~~~~~~i~~~~-~~~~~g~~~~~~~~is~~~g~~~   83 (460)
T 3mkt_A            5 HRYKKEASNLIKLATPVLIASVAQTGMGFVDTIMAGGVSAIDMAAVSIAASIWLPS-ILFGVGLLMALVPVVAQLNGAGR   83 (460)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHTTTTSSHHHHHHHHHHHH-HHHHHHHHHHHGGGCTTTTSSSS
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHcCCC
Confidence            34568899999999999999999999999999999999999999999999998887 88889999999999999999999


Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHcCCCHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCCchHHH
Q 021881           99 WDLLSLSLQRMILILFFAIIPISLLWLNLETVMIFMGQDKDITAMAATYTLYALPDLLTNTLLQPLRVFLRSQKVTKPMM  178 (306)
Q Consensus        99 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~il~~~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~g~~~~~~  178 (306)
                      +|+.++.++.+..+.++.+++..+++.+.++++.+++.|++..+.+..|+++.+++.++..+..++.+++++.||++.++
T Consensus        84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~  163 (460)
T 3mkt_A           84 QHKIPFEVHQGLILALLVSVPIIAVLFQTQFIIRFMDVEEAMATKTVGYMHAVIFAVPAYLLFQALRSFTDGMSLTKPAM  163 (460)
T ss_dssp             TTTHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSSCSSTTHHHHHHHHHHTTGGGHHHHHHHHHHHTTTTCTTSCCTTTH
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcHHHH
Confidence            99999999999999999999887677888999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHhHHHHHhh-c---CCChhhhHHHHHHHHHHHHHHHhhhhhhhhHHhhhhhhhhhhheeee-cc---cc
Q 021881          179 WCTLVAVMFHVPLNYCLVMK-L---KLGVPGVAMASVVCNLNMLKIGFSGLWFGLLSAQAACAVSILYVVLV-RT---DW  250 (306)
Q Consensus       179 ~~~~i~~~~~i~l~~~li~~-~---~~G~~Ga~~a~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~---~~  250 (306)
                      +.++++.++|+++++++++. +   ++|+.|+++|+.+++.+..++....+++.           ......+ ++   ++
T Consensus       164 ~~~~~~~~~~i~l~~~li~~~~~~p~~g~~g~a~a~~i~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~  232 (460)
T 3mkt_A          164 VIGFIGLLLNIPLNWIFVYGKFGAPELGGVGCGVATAIVYWIMLLLLLFYIVTS-----------KRLAHVKVFETFHKP  232 (460)
T ss_dssp             HHHHHHHHHHHHHHHHHHSCCTTCCCCHHHHHHHHHHHHHHHHHHHHHHHHHTC-----------SSCCCCCCSCCCCSS
T ss_pred             HHHHHHHHHHHHHHHHHHcCCCCCcccchhhHHHHHHHHHHHHHHHHHHHHHhC-----------cchhhhhhhhccccc
Confidence            99999999999999999975 3   69999999999999999887632222210           0000000 01   11


Q ss_pred             hHHHHHHhhh-----------hHHHHHHHHhhcCCCchhhHHHHHHHHhhhhHHHHHhhhhhcCC
Q 021881          251 EAEAMKAMKL-----------TSLEISTFNAGAGDTNEEEEEEESKGLLLYGICFRLLDAFFSGW  304 (306)
Q Consensus       251 ~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~a~~~i~~~i~~~~~~~~~~~~~~~  304 (306)
                      +++..|+..+           ............+..|+++++++++..++.++.+++..+++.++
T Consensus       233 ~~~~~~~~l~~~~p~~~~~~~~~~~~~~~~~~~~~~g~~~va~~~i~~~i~~~~~~~~~~~~~a~  297 (460)
T 3mkt_A          233 QPKELIRLFRLGFPVAAALFFEVTLFAVVALLVAPLGSTVVAAHQVALNFSSLVFMFPMSIGAAV  297 (460)
T ss_dssp             TTSSTTTSHHHHHHHHHHHHHHHHHHHHHHHHTCTTSSHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHcChHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            1111111100           11111222223455699999999999999999999999987653

>3mkt_A Multi antimicrobial extrusion protein (Na(+)/drug antiporter) MATE-like MDR efflux...; multidrug transporter, cation-bound, transport protein; 3.65A {Vibrio cholerae} PDB: 3mku_A

Probab=99.93  E-value=1.5e-24  Score=200.68  Aligned_cols=201  Identities=15%  Similarity=0.209  Sum_probs=190.9

Q ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccChhhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhcCCC
Q 021881           19 SQVVEELKELWGMALPMTGMNILVFIRAVVSVLFLGRLGSLELAGGALSIGFTNITGYSVLVGLASGLEPVCSQAYGSKN   98 (306)
Q Consensus        19 ~~~~~~~k~~l~~~~P~~~~~~~~~~~~~~~~~~i~~~g~~~~a~~~~~~~i~~l~~~~~~~gi~~a~~~~~s~~~g~~~   98 (306)
                      +.+++..|++++++.|..++++...+...+|+.+++++|++++++|+++.++.++. ..+..+++++..|.+++++|++|
T Consensus       231 ~~~~~~~~~~l~~~~p~~~~~~~~~~~~~~~~~~~~~~g~~~va~~~i~~~i~~~~-~~~~~~~~~a~~p~i~~~~g~~~  309 (460)
T 3mkt_A          231 KPQPKELIRLFRLGFPVAAALFFEVTLFAVVALLVAPLGSTVVAAHQVALNFSSLV-FMFPMSIGAAVSIRVGHKLGEQD  309 (460)
T ss_dssp             SSTTSSTTTSHHHHHHHHHHHHHHHHHHHHHHHHTCTTSSHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHSSC
T ss_pred             ccCHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHcChHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHcCCC
Confidence            45677899999999999999999999999999999999999999999999999998 89999999999999999999999


Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHH-HHHhHHHHHHHcCCCHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCCchHH
Q 021881           99 WDLLSLSLQRMILILFFAIIPISL-LWLNLETVMIFMGQDKDITAMAATYTLYALPDLLTNTLLQPLRVFLRSQKVTKPM  177 (306)
Q Consensus        99 ~~~~~~~~~~~~~~~~~~~i~~~~-~~~~~~~il~~~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~g~~~~~  177 (306)
                      +|++++..++...+...++++..+ ++.+++++..++.+|+++.+.+..++++++++.++.+++.+..+++++.||+|.+
T Consensus       310 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~g~~~~~  389 (460)
T 3mkt_A          310 TKGAAIAANVGLMTGLATACITALLTVLFREQIALLYTENQVVVALAMQLLLFAAIYQCMDAVQVVAAGSLRGYKDMTAI  389 (460)
T ss_dssp             CCTTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCSSCCSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHGGGSTHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchHHH
Confidence            999999999999999999999865 6899999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHH-HHHHHhHHHHHhh----cC-CChhhhHHHHHHHHHHHHHH
Q 021881          178 MWCTLVAV-MFHVPLNYCLVMK----LK-LGVPGVAMASVVCNLNMLKI  220 (306)
Q Consensus       178 ~~~~~i~~-~~~i~l~~~li~~----~~-~G~~Ga~~a~~i~~~~~~~~  220 (306)
                      ++.++++. ++++++++++.+.    .+ +|+.|+++|+.+++.+..++
T Consensus       390 ~~~~~~~~~~~~i~l~~~l~~~~~~~~~~~G~~G~~~a~~~~~~~~~~~  438 (460)
T 3mkt_A          390 FHRTFISYWVLGLPTGYILGMTNWLTEQPLGAKGFWLGFIIGLSAAALM  438 (460)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHTSSCCSSHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHhhhhccccccCchhHHHHHHHHHHHHHHH
Confidence            99999999 9999999999986    56 99999999999999988865

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00