Citrus Sinensis ID: 021895

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300------
Protein Sequence
MPLLRRLSSSLQQVVKFTNRSFKSLKFPGEPIESSVSPTLTHGIHVFHCPDEVGIVAKLSECIASRGGNILAADVFVPEKKNVFYSRSEFIFDPIKWPREQMDEDFFKLSKMFNAMRSVVRVPDIDPKYKVAVLASKQEHCLVDFLYGWQEGKLPVEITCVISNHDRGPNSHVIRFLERHGIPYHYLCAKENEREEELLELVQNTDFLVLARYMQPVPLQKEAYLGYKLLESLSSKGSLTSYFNMILSGKFLRSYGKDVINIHHGLLPSFKGGKPAKQVGCFTFCLGNLITILSSSFFPSLTSHTH
Secondary Structure (PSIPRED)
cccHHHHHHHHHHHccccccccccccccccccccccccccccEEEEEEccccccHHHHHHHHHHHcccccccccccccccccEEEEEEEEEEccccccHHHHHHHHHHHHHHHcccccEEEccccccccEEEEEEEcccHHHHHHHHHHHccccccEEEEEEccccccccccHHHHHHHccccEEEEccccHHHHHHHHHHHHcccEEEEEcccccccccHHHHHHHHHHHHccccccccccccccccHHHHHHHcccEEEEcccccccccccccHHHcccccccccccccEEEcccEEccccccc
Secondary Structure Prediction (SSPRO)
ccHHHHccccccHHHcccccccccccccccccccccccccccEEEEEEccccccHHHHHHHHHHHccccEEEccccccccccEEEEEEEEEcccccccHHHHHHHHHHHHHHccccEEEEEEcccccccEEEEEEEccccHHHHHHHHHHccccccEEEEEEEcccccccHHHHHHHHHccccEEEEEcccccHHHHHHHHHHcccEEEEEHccccccHHHHHHHHHHHHHHccccccccHHHHHHccHHHHHHccccEEEEcccccccccccccHHHHHHHHHHcccEEEEEEEEEccHHHcccc
Coil and Loop (DISEMBL)
MPLLRRLSSSLQQVVKFTNRsfkslkfpgepiessvsptlthgihvfhcpdeVGIVAKLSECIAsrggnilaadvfvpekknvfysrsefifdpikwpreqmdEDFFKLSKMFNAMRsvvrvpdidpkYKVAVLASKQEHCLVDFLygwqegklpvEITCVisnhdrgpnshVIRFLErhgipyhylcaKENEREEELLELVQNTDFLVLARYmqpvplqkeAYLGYKLLESlsskgsltSYFNMILSGKFLRSYGkdvinihhgllpsfkggkpakqvgCFTFCLGNLITIlsssffpsltshth
Flexible Loop (DISEMBL)
mpllrrlsssLQQVVKFTnrsfkslkfpgePIESSVSPTLTHGIHVFHCPDEVGIVAKLSECIASRGGNILAADVFVPEKKNVFYSRSefifdpikwprEQMDEDFFKLSKMFNAMRSVVRVPDIDPKYKVAVLASKQEHCLVDFLYGWQEGKLPVEITCVISNHDRGPNSHVIRFLERHGIPYHYLCAKENEREEELLELVQNTDFLVLARYMQPVPLQKEAYLGYKLLESLSSKGSLTSYFNMILSGKFLRSYGKDVINIHHGLLPSFKGGKPAKQVGCFTFCLGNLITILsssffpsltshth
Low Complexity Region (SEG)
MPllrrlssslQQVVKFTNRSFKSLKFPGEPIESSVSPTLTHGIHVFHCPDEVGIVAKLSECIASRGGNILAADVFVPEKKNVFYSRSEFIFDPIKWPREQMDEDFFKLSKMFNAMRSVVRVPDIDPKYKVAVLASKQEHCLVDFLYGWQEGKLPVEITCVISNHDRGPNSHVIRFLERHGIPYHYLCAKenereeellelVQNTDFLVLARYMQPVPLQKEAylgyklleslsskgsltsyFNMILSGKFLRSYGKDVINIHHGLLPSFKGGKPAKQVGCFTFCLGNLITILSSSFFPSLTSHTH
Disordered region (IsUnstruct)
***************************************LTHGIHVFHCPDEVGIVAKLSECIASRGGNILAADVFVPEKKNVFYSRSEFIFDPIKWPREQMDEDFFKLSKMFNAMRSVVRVPDIDPKYKVAVLASKQEHCLVDFLYGWQEGKLPVEITCVISNHDRGPNSHVIRFLERHGIPYHYLCAKENEREEELLELVQNTDFLVLARYMQPVPLQKEAYLGYKLLESLSSKGSLTSYFNMILSGKFLRSYGKDVINIHHGLLPSFKGGKPAKQVGCFTFCLGNLITILSSSFF********
Disordered Region (DISOPRED)
*******************************************IHVFHCPDEVGIVAKLSECIASRGGNILAADVFVPEKKNVFYSRSEFIFDPIKWPREQMDEDFFKLSKMFNAMRSVVRVPDIDPKYKVAVLASKQEHCLVDFLYGWQEGKLPVEITCVISNHDRGPNSHVIRFLERHGIPYHYLCAKENEREEELLELVQNTDFLVLARYMQPVPLQKEAYLGYKLLESLSSKGSLTSYFNMILSGKFLRSYGKDVINIHHGLLPSFKGGKPAKQVGCFTFCLGNLITILSSSFF*S******
Disordered Region (DISEMBL)
MPLLRRLSSSLQQVVKFTNRSFKSLKFPGEPIESSVSPTLTHGIHVFHCPDEVGIVAKLSECIASRGGNILAADVFVPEKKNVFYSRSEFIFDPIKWPREQMDEDFFKLSKMFNAMRSVVRVPDIDPKYKVAVLASKQEHCLVDFLYGWQEGKLPVEITCVISNHDRGPNSHVIRFLERHGIPYHYLCAKENEREEELLELVQNTDFLVLARYMQPVPLQKEAYLGYKLLESLSSKGSLTSYFNMILSGKFLRSYGKDVINIHHGLLPSFKGGKPAKQVGCFTFCLGNLITILSSSFFPSLTSHTH
Disordered Region (DISPRO)
****************************************THGIHVFHCPDEVGIVAKLSECIASRGGNILAADVFVPEKKNVFYSRSEFIFDPIKWPREQMDEDFFKLSKMFNAMRSVVRVPDIDPKYKVAVLASKQEHCLVDFLYGWQEGKLPVEITCVISNHDRGPNSHVIRFLERHGIPYHYLCAKENEREEELLELVQNTDFLVLARYMQPVPLQKEAYLGYKLLESLSSKGSLTSYFNMILSGKFLRSYGKDVINIHHGLLPSFKGGKPAKQVGCFTFCLGNLITILSSSFFPSL*****
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooo
TM Helix, Signal Peptide (Phobius)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MPLLRRLSSSLQQVVKFTNRSFKSLKFPGEPIESSVSPTLTHGIHVFHCPDEVGIVAKLSECIASRGGNILAADVFVPEKKNVFYSRSEFIFDPIKWPREQMDEDFFKLSKMFNAMRSVVRVPDIDPKYKVAVLASKQEHCLVDFLYGWQEGKLPVEITCVISNHDRGPNSHVIRFLERHGIPYHYLCAKENEREEELLELVQNTDFLVLARYMQPVPLQKEAYLGYKLLESLSSKGSLTSYFNMILSGKFLRSYGKDVINIHHGLLPSFKGGKPAKQVGCFTFCLGNLITILSSSFFPSLTSHTH
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	306	2.2.26 [Sep-21-2011]
O34990	300	Formyltetrahydrofolate de	yes	no	0.630	0.643	0.295	2e-22
Q55135	284	Formyltetrahydrofolate de	N/A	no	0.614	0.661	0.306	3e-20
P0A5T6	310	Formyltetrahydrofolate de	yes	no	0.630	0.622	0.294	1e-17
P0A5T7	310	Formyltetrahydrofolate de	yes	no	0.630	0.622	0.294	1e-17
Q46339	286	Formyltetrahydrofolate de	N/A	no	0.637	0.681	0.285	2e-15
P37051	280	Formyltetrahydrofolate de	N/A	no	0.594	0.65	0.25	2e-15
P0A441	280	Formyltetrahydrofolate de	yes	no	0.594	0.65	0.25	2e-15
P0A440	280	Formyltetrahydrofolate de	yes	no	0.594	0.65	0.25	2e-15
Q03432	278	Formyltetrahydrofolate de	yes	no	0.601	0.661	0.294	3e-15

>sp|O34990|PURU_BACSU Formyltetrahydrofolate deformylase OS=Bacillus subtilis (strain 168) GN=purU PE=3 SV=2

 Score =  106 bits (265), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 70/237 (29%), Positives = 116/237 (48%), Gaps = 44/237 (18%)

Query: 49  CPDEVGIVAKLSECIASRGGNILAADVFVPE-KKNVFYSRSEFIFDPIKWPREQMDEDFF 107
           CPD+ GIV+ +S  +   G NI+ ++ +  + +   F+ R EF    I+  +  +   F 
Sbjct: 26  CPDQPGIVSAVSAFLFEHGANIIESNQYTTDPEGGRFFLRIEFDCAGIREKKSSLQAAFA 85

Query: 108 KLSKMFNAMRSVVRVPDIDPKYKVAVLASKQEHCLVDFLYGWQEGKLPVEITCVISNHDR 167
            +++ F+   S+    ++    +VA+  SK+ HCL + ++ WQ G L  EI  VISNH+ 
Sbjct: 86  SVAEKFDMTWSLTLASELK---RVAIFVSKELHCLHELIWEWQTGNLMAEIAVVISNHEE 142

Query: 168 GPNSHVIRFLERHGIPYHYLCAKEN---EREEELLELVQ--NTDFLVLARYMQPVPLQKE 222
                    +ER  IP+HY+ A ++   E E++ LEL++  + D +VLARYMQ       
Sbjct: 143 AR-----ELVERLNIPFHYMKANKDIRAEVEKKQLELLEQYDVDVIVLARYMQ------- 190

Query: 223 AYLGYKLLESLSSKGSLTSYFNMILSGKFLRSYGKDVINIHHGLLPSFKGGKPAKQV 279
                                  IL+  F+ ++   +INIHH  LP+F G  P K+ 
Sbjct: 191 -----------------------ILTPDFVSAHPNRIINIHHSFLPAFIGANPYKRA 224

Bacillus subtilis (strain 168) (taxid: 224308)
EC: 3EC: .EC: 5EC: .EC: 1EC: .EC: 1EC: 0

>sp|Q55135|PURU_SYNY3 Formyltetrahydrofolate deformylase OS=Synechocystis sp. (strain PCC 6803 / Kazusa) GN=purU PE=3 SV=1

 Score = 99.4 bits (246), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 71/232 (30%), Positives = 112/232 (48%), Gaps = 44/232 (18%)

Query: 49  CPDEVGIVAKLSECIASRGGNILAADVFVPEKKNVFYSRSEFIFDPIKWPREQMDEDFFK 108
           CPD+ GIVA++++ I    GNI+ AD        +F +R E+  D  +  R ++   + +
Sbjct: 12  CPDQPGIVAQIAQFIYQNQGNIIHADQHTDFSSGLFLNRVEWQLDNFRLSRPELLSAWSQ 71

Query: 109 LSKMFNAMRSVVRVPDIDPKYKVAVLASKQEHCLVDFLYGWQEGKLPVEITCVISNHDRG 168
           L++   A   +    D  P+  +A+  SKQ+HCL+D L+ W+ G+L  EI  +ISNH   
Sbjct: 72  LAEQLQATWQI-HFSDQLPR--LALWVSKQDHCLLDILWRWRSGELRCEIPLIISNH--- 125

Query: 169 PNSHVIRFLERHGIPYHYL-CAKENEREEELLELV----QNTDFLVLARYMQPVPLQKEA 223
           P+   I   ++ GI +H L   KEN+  +E  EL        D +VLA+Y+Q        
Sbjct: 126 PDLKSIA--DQFGIDFHCLPITKENKLAQETAELALLKQYQIDLVVLAKYLQ-------- 175

Query: 224 YLGYKLLESLSSKGSLTSYFNMILSGKFLRSYGKDVINIHHGLLPSFKGGKP 275
                                 IL+  F+  +  ++INIHH  LP+F G  P
Sbjct: 176 ----------------------ILTTDFVVQF-PNIINIHHSFLPAFPGANP 204

Synechocystis sp. (strain PCC 6803 / Kazusa) (taxid: 1111708)

EC: 3

EC: .

EC: 5

EC: .

EC: 1

EC: .

EC: 1

EC: 0

>sp|P0A5T6|PURU_MYCTU Formyltetrahydrofolate deformylase OS=Mycobacterium tuberculosis GN=purU PE=3 SV=1

 Score = 90.5 bits (223), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 71/241 (29%), Positives = 111/241 (46%), Gaps = 48/241 (19%)

Query: 46  VFHCPDEVGIVAKLSECIASRGGNILAADVF--VPEKKNVFYSRSEFIFDPIKWPREQMD 103
           +  C D  GI+A +S  +A  G NI++ D     PE    F  R+ F    +    +++ 
Sbjct: 34  LLRCHDRPGIIAAVSTFLARAGANIISLDQHSTAPEG-GTFLQRAIFHLPGLTAAVDELQ 92

Query: 104 EDFFKLSKMFNAMRSVVRVPDIDPKYKVAVLASKQEHCLVDFLYGWQEGKLPVEITCVIS 163
            DF   S + +      R  +     +VA++AS ++HCL+D L+  + G+L + +  VI+
Sbjct: 93  RDFG--STVADKFGIDYRFAEAAKPKRVAIMASTEDHCLLDLLWRNRRGELEMSVVMVIA 150

Query: 164 NHDRGPN--SHVIRFLERHGIPYHYLCAKENEREE----ELLELVQNTDFLVLARYMQPV 217
           NH   P+  +HV  F    G+P+ ++ A  + R E    +L  L  N D +VLARYMQ  
Sbjct: 151 NH---PDLAAHVRPF----GVPFIHIPATRDTRTEAEQRQLQLLSGNVDLVVLARYMQ-- 201

Query: 218 PLQKEAYLGYKLLESLSSKGSLTSYFNMILSGKFLRSYGKDVINIHHGLLPSFKGGKPAK 277
                                       ILS  FL + G  +INIHH  LP+F G  P +
Sbjct: 202 ----------------------------ILSPGFLEAIGCPLINIHHSFLPAFTGAAPYQ 233

Query: 278 Q 278
           +
Sbjct: 234 R 234

Mycobacterium tuberculosis (taxid: 1773)

EC: 3

EC: .

EC: 5

EC: .

EC: 1

EC: .

EC: 1

EC: 0

>sp|P0A5T7|PURU_MYCBO Formyltetrahydrofolate deformylase OS=Mycobacterium bovis (strain ATCC BAA-935 / AF2122/97) GN=purU PE=3 SV=1

 Score = 90.5 bits (223), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 71/241 (29%), Positives = 111/241 (46%), Gaps = 48/241 (19%)

Query: 46  VFHCPDEVGIVAKLSECIASRGGNILAADVF--VPEKKNVFYSRSEFIFDPIKWPREQMD 103
           +  C D  GI+A +S  +A  G NI++ D     PE    F  R+ F    +    +++ 
Sbjct: 34  LLRCHDRPGIIAAVSTFLARAGANIISLDQHSTAPEG-GTFLQRAIFHLPGLTAAVDELQ 92

Query: 104 EDFFKLSKMFNAMRSVVRVPDIDPKYKVAVLASKQEHCLVDFLYGWQEGKLPVEITCVIS 163
            DF   S + +      R  +     +VA++AS ++HCL+D L+  + G+L + +  VI+
Sbjct: 93  RDFG--STVADKFGIDYRFAEAAKPKRVAIMASTEDHCLLDLLWRNRRGELEMSVVMVIA 150

Query: 164 NHDRGPN--SHVIRFLERHGIPYHYLCAKENEREE----ELLELVQNTDFLVLARYMQPV 217
           NH   P+  +HV  F    G+P+ ++ A  + R E    +L  L  N D +VLARYMQ  
Sbjct: 151 NH---PDLAAHVRPF----GVPFIHIPATRDTRTEAEQRQLQLLSGNVDLVVLARYMQ-- 201

Query: 218 PLQKEAYLGYKLLESLSSKGSLTSYFNMILSGKFLRSYGKDVINIHHGLLPSFKGGKPAK 277
                                       ILS  FL + G  +INIHH  LP+F G  P +
Sbjct: 202 ----------------------------ILSPGFLEAIGCPLINIHHSFLPAFTGAAPYQ 233

Query: 278 Q 278
           +
Sbjct: 234 R 234

Mycobacterium bovis (taxid: 1765)

EC: 3

EC: .

EC: 5

EC: .

EC: 1

EC: .

EC: 1

EC: 0

>sp|Q46339|PURU_CORS1 Formyltetrahydrofolate deformylase OS=Corynebacterium sp. (strain P-1) GN=purU PE=3 SV=1

 Score = 83.2 bits (204), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 68/238 (28%), Positives = 107/238 (44%), Gaps = 43/238 (18%)

Query: 47  FHCPDEVGIVAKLSECIASRGGNILAADVFVPEKKNVFYSRSEFIFDPIKWPREQMDEDF 106
             CP+ +GIV  ++  +      I+    +        + R +F  D      + +  +F
Sbjct: 11  LQCPEGIGIVHAVTGFLVRHQRTIVELKQYDDMSAGRLFLRVDFAGDSAPDLLDALRSEF 70

Query: 107 FKLSKMFNAMRSVVRVPDIDPKYKVAVLASKQEHCLVDFLYGWQEGKLPVEITCVISNHD 166
            +++  F+ M   +R  +   K KV ++ SK EHCL D L+    G LP+E+  V SNH 
Sbjct: 71  SEVAAKFD-MDWQLR--ERGQKTKVLIMVSKFEHCLQDLLFRMHSGDLPIEVVGVASNH- 126

Query: 167 RGPNSHVIRFLERHGIPYHYLCAKENER---EEELLELVQNT--DFLVLARYMQPVPLQK 221
             P+   +  +E +GI +H++   ++ +   E  LLEL+  T  + +VLARYMQ      
Sbjct: 127 --PDHRSL--VEWYGIGFHHIPISKDTKPRAEAALLELIDQTGAELVVLARYMQ------ 176

Query: 222 EAYLGYKLLESLSSKGSLTSYFNMILSGKFLRSYGKDVINIHHGLLPSFKGGKPAKQV 279
                            L+ +    L+GK         INIHH  LPSFKG KP  Q 
Sbjct: 177 ----------------VLSDHLASELTGK--------TINIHHSFLPSFKGAKPYHQA 210

Corynebacterium sp. (strain P-1) (taxid: 69006)

EC: 3

EC: .

EC: 5

EC: .

EC: 1

EC: .

EC: 1

EC: 0

>sp|P37051|PURU_ECOLI Formyltetrahydrofolate deformylase OS=Escherichia coli (strain K12) GN=purU PE=1 SV=1

 Score = 83.2 bits (204), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 60/240 (25%), Positives = 106/240 (44%), Gaps = 58/240 (24%)

Query: 49  CPDEVGIVAKLSECIASRGGNILAADVFVPEKKNVFYSRSEFIFDPIKWPREQMDEDFFK 108
           CPD+ G++A+++        NI+  + FV  +   F+ R+E              E  F 
Sbjct: 13  CPDQKGLIARITNICYKHELNIVQNNEFVDHRTGRFFMRTEL-------------EGIFN 59

Query: 109 LSKMFNAMRSVV---RVPDIDP--KYKVAVLASKQEHCLVDFLYGWQEGKLPVEITCVIS 163
            S +   + S +    V +++P  + ++ +L +K+ HCL D L     G L VEI  VI 
Sbjct: 60  DSTLLADLDSALPEGSVRELNPAGRRRIVILVTKEAHCLGDLLMKANYGGLDVEIAAVIG 119

Query: 164 NHDRGPNSHVIRFLERHGIPYHYLCAK---ENEREEELLELVQ--NTDFLVLARYMQPVP 218
           NHD      +   +ER  IP+  +  +    NE ++++ + +     D++VLA+YM+   
Sbjct: 120 NHDT-----LRSLVERFDIPFELVSHEGLTRNEHDQKMADAIDAYQPDYVVLAKYMR--- 171

Query: 219 LQKEAYLGYKLLESLSSKGSLTSYFNMILSGKFLRSYGKDVINIHHGLLPSFKGGKPAKQ 278
                                      +L+ +F+  +   +INIHH  LP+F G +P  Q
Sbjct: 172 ---------------------------VLTPEFVARFPNKIINIHHSFLPAFIGARPYHQ 204

Produces formate from formyl-tetrahydrofolate. Provides the major source of formate for the purT-dependent synthesis of 5'-phosphoribosyl-N-formylglycinamide (FGAR) during aerobic growth. Has a role in regulating the one-carbon pool.

Escherichia coli (strain K12) (taxid: 83333)

EC: 3

EC: .

EC: 5

EC: .

EC: 1

EC: .

EC: 1

EC: 0

>sp|P0A441|PURU_SHIFL Formyltetrahydrofolate deformylase OS=Shigella flexneri GN=purU PE=3 SV=1

 Score = 83.2 bits (204), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 60/240 (25%), Positives = 106/240 (44%), Gaps = 58/240 (24%)

Query: 49  CPDEVGIVAKLSECIASRGGNILAADVFVPEKKNVFYSRSEFIFDPIKWPREQMDEDFFK 108
           CPD+ G++A+++        NI+  + FV  +   F+ R+E              E  F 
Sbjct: 13  CPDQKGLIARITNICYKHELNIVQNNEFVDHRTGRFFMRTEL-------------EGIFN 59

Query: 109 LSKMFNAMRSVV---RVPDIDP--KYKVAVLASKQEHCLVDFLYGWQEGKLPVEITCVIS 163
            S +   + S +    V +++P  + ++ +L +K+ HCL D L     G L VEI  VI 
Sbjct: 60  DSTLLADLDSALPEGSVRELNPAGRRRIVILVTKEAHCLGDLLMKANYGGLDVEIAAVIG 119

Query: 164 NHDRGPNSHVIRFLERHGIPYHYLCAK---ENEREEELLELVQ--NTDFLVLARYMQPVP 218
           NHD      +   +ER  IP+  +  +    NE ++++ + +     D++VLA+YM+   
Sbjct: 120 NHDT-----LRSLVERFDIPFELVSHEGLSRNEHDQKMADAIDAYQPDYVVLAKYMR--- 171

Query: 219 LQKEAYLGYKLLESLSSKGSLTSYFNMILSGKFLRSYGKDVINIHHGLLPSFKGGKPAKQ 278
                                      +L+ +F+  +   +INIHH  LP+F G +P  Q
Sbjct: 172 ---------------------------VLTPEFVARFPNKIINIHHSFLPAFIGARPYHQ 204

Produces formate from formyl-tetrahydrofolate. Provides the major source of formate for the purT-dependent synthesis of 5'-phosphoribosyl-N-formylglycinamide (FGAR) during aerobic growth. Has a role in regulating the one-carbon pool.

Shigella flexneri (taxid: 623)

EC: 3

EC: .

EC: 5

EC: .

EC: 1

EC: .

EC: 1

EC: 0

>sp|P0A440|PURU_ECOL6 Formyltetrahydrofolate deformylase OS=Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC) GN=purU PE=3 SV=1

 Score = 83.2 bits (204), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 60/240 (25%), Positives = 106/240 (44%), Gaps = 58/240 (24%)

Query: 49  CPDEVGIVAKLSECIASRGGNILAADVFVPEKKNVFYSRSEFIFDPIKWPREQMDEDFFK 108
           CPD+ G++A+++        NI+  + FV  +   F+ R+E              E  F 
Sbjct: 13  CPDQKGLIARITNICYKHELNIVQNNEFVDHRTGRFFMRTEL-------------EGIFN 59

Query: 109 LSKMFNAMRSVV---RVPDIDP--KYKVAVLASKQEHCLVDFLYGWQEGKLPVEITCVIS 163
            S +   + S +    V +++P  + ++ +L +K+ HCL D L     G L VEI  VI 
Sbjct: 60  DSTLLADLDSALPEGSVRELNPAGRRRIVILVTKEAHCLGDLLMKANYGGLDVEIAAVIG 119

Query: 164 NHDRGPNSHVIRFLERHGIPYHYLCAK---ENEREEELLELVQ--NTDFLVLARYMQPVP 218
           NHD      +   +ER  IP+  +  +    NE ++++ + +     D++VLA+YM+   
Sbjct: 120 NHDT-----LRSLVERFDIPFELVSHEGLSRNEHDQKMADAIDAYQPDYVVLAKYMR--- 171

Query: 219 LQKEAYLGYKLLESLSSKGSLTSYFNMILSGKFLRSYGKDVINIHHGLLPSFKGGKPAKQ 278
                                      +L+ +F+  +   +INIHH  LP+F G +P  Q
Sbjct: 172 ---------------------------VLTPEFVARFPNKIINIHHSFLPAFIGARPYHQ 204

Produces formate from formyl-tetrahydrofolate. Provides the major source of formate for the purT-dependent synthesis of 5'-phosphoribosyl-N-formylglycinamide (FGAR) during aerobic growth. Has a role in regulating the one-carbon pool.

Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC) (taxid: 199310)

EC: 3

EC: .

EC: 5

EC: .

EC: 1

EC: .

EC: 1

EC: 0

>sp|Q03432|PURU_HAEIN Formyltetrahydrofolate deformylase OS=Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd) GN=purU PE=3 SV=2

 Score = 82.8 bits (203), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 70/238 (29%), Positives = 109/238 (45%), Gaps = 54/238 (22%)

Query: 49  CPDEVGIVAKLSECIASRGGNILAADVFVPEKKNVFYSRSEF--IFDPIKWPREQMDEDF 106
           CPD+ G++AK++        NIL  + FV  +   F+ R+E   IF+        +++  
Sbjct: 11  CPDDKGLIAKITNICYKHQLNILHNNEFVDFETKHFFMRTELEGIFNEATL----LEDLK 66

Query: 107 FKLSKMFNAMRSVVRVPDIDPKYKVAVLASKQEHCLVDFLYGWQEGKLPVEITCVISNHD 166
           + L +  N      R+     K ++ +L +K+ HCL D L     G L VEI  VI NHD
Sbjct: 67  YSLPEETNC-----RLIGTQRK-RIVILVTKEAHCLGDILMKNYYGALDVEIAAVIGNHD 120

Query: 167 RGPNSHVIRFLERHGIPYHYLCAKEN----EREEELLELVQ--NTDFLVLARYMQPVPLQ 220
                ++   +ER  IP+H L + EN    E ++ L E +     D++VLA+YM+     
Sbjct: 121 -----NLRELVERFNIPFH-LVSHENLTRVEHDKLLAEKIDEYTPDYIVLAKYMR----- 169

Query: 221 KEAYLGYKLLESLSSKGSLTSYFNMILSGKFLRSYGKDVINIHHGLLPSFKGGKPAKQ 278
                                    +L+ +F+  Y   VINIHH  LP+F G KP +Q
Sbjct: 170 -------------------------VLNPEFVARYPNRVINIHHSFLPAFIGAKPYQQ 202

Produces formate from formyl-tetrahydrofolate. Provides the major source of formate for the purT-dependent synthesis of 5'-phosphoribosyl-N-formylglycinamide (FGAR) during aerobic growth. Has a role in regulating the one-carbon pool.

Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd) (taxid: 71421)

EC: 3

EC: .

EC: 5

EC: .

EC: 1

EC: .

EC: 1

EC: 0

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	306
359495984	329	PREDICTED: formyltetrahydrofolate deform	0.813	0.756	0.692	1e-109
255579631	341	phosphoribosylamine-glycine ligase, puta	0.797	0.715	0.699	1e-108
449458970	326	PREDICTED: formyltetrahydrofolate deform	0.813	0.763	0.653	1e-102
358248700	316	uncharacterized protein LOC100780134 [Gl	0.777	0.753	0.659	1e-100
224074167	317	formyltetrahydrofolate deformylase [Popu	0.764	0.738	0.664	1e-100
356563338	316	PREDICTED: formyltetrahydrofolate deform	0.781	0.756	0.653	4e-99
357502477	324	Formyltetrahydrofolate deformylase [Medi	0.790	0.746	0.647	1e-95
217071818	324	unknown [Medicago truncatula]	0.790	0.746	0.647	2e-95
388513597	322	unknown [Medicago truncatula]	0.790	0.751	0.647	2e-95
224138620	317	formyltetrahydrofolate deformylase [Popu	0.718	0.694	0.659	1e-94

>gi|359495984|ref|XP_003635126.1| PREDICTED: formyltetrahydrofolate deformylase-like [Vitis vinifera] gi|297744389|emb|CBI37363.3| unnamed protein product [Vitis vinifera]

 Score =  399 bits (1026), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 196/283 (69%), Positives = 221/283 (78%), Gaps = 34/283 (12%)

Query: 1   MPLLRRLSSSLQQVVKFTNRSFKSLKFPGEPI---ESSVSPTLTHGIHVFHCPDEVGIVA 57
           M L RRLS+SL Q++ FTNRSFKSLKFP + +    SS   +L HGIHVFHCPD VGIVA
Sbjct: 1   MSLRRRLSTSLPQLLGFTNRSFKSLKFPQQSLHCFNSSSESSLAHGIHVFHCPDGVGIVA 60

Query: 58  KLSECIASRGGNILAADVFVPEKKNVFYSRSEFIFDPIKWPREQMDEDFFKLSKMFNAMR 117
           KLS+CIASRGGNIL AD+FVPE K VFYSRSEFIFDP KWPR QMDEDF KLS MFNAM+
Sbjct: 61  KLSDCIASRGGNILGADIFVPENKKVFYSRSEFIFDPAKWPRAQMDEDFLKLSNMFNAMK 120

Query: 118 SVVRVPDIDPKYKVAVLASKQEHCLVDFLYGWQEGKLPVEITCVISNHDRGPNSHVIRFL 177
           SVVRVP +DPKYK++VLASKQ+HCLVD L+GWQ+G+LPV+ITCVISNHDRGPN+HV RFL
Sbjct: 121 SVVRVPILDPKYKISVLASKQDHCLVDLLHGWQDGRLPVDITCVISNHDRGPNTHVFRFL 180

Query: 178 ERHGIPYHYL-CAKENEREEELLELVQNTDFLVLARYMQPVPLQKEAYLGYKLLESLSSK 236
           ERHGIPYHYL   KEN+RE E+L+LVQ+TDFLVLARYMQ                     
Sbjct: 181 ERHGIPYHYLHTTKENKREGEILDLVQDTDFLVLARYMQ--------------------- 219

Query: 237 GSLTSYFNMILSGKFLRSYGKDVINIHHGLLPSFKGGKPAKQV 279
                    ILSG FL+SYGKD+INIHHGLLPSFKGG P+KQ 
Sbjct: 220 ---------ILSGNFLKSYGKDIINIHHGLLPSFKGGNPSKQA 253

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255579631|ref|XP_002530656.1| phosphoribosylamine-glycine ligase, putative [Ricinus communis] gi|223529789|gb|EEF31725.1| phosphoribosylamine-glycine ligase, putative [Ricinus communis]

 Score =  396 bits (1018), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 193/276 (69%), Positives = 221/276 (80%), Gaps = 32/276 (11%)

Query: 5   RRLSSSLQQVVKFTNRSFKSLKFPGEPIESSVSPTLTHGIHVFHCPDEVGIVAKLSECIA 64
           RR+SS + QV  F NRSFKSLK PGE ++SS SP LTHGIHVFHCPD VGIVAKLS+CIA
Sbjct: 6   RRISSVIPQVFGFANRSFKSLKTPGEFLDSS-SPCLTHGIHVFHCPDAVGIVAKLSDCIA 64

Query: 65  SRGGNILAADVFVPEKKNVFYSRSEFIFDPIKWPREQMDEDFFKLSKMFNAMRSVVRVPD 124
           SRGGNIL ADVFVPE KNVFYSRSEF+ D IKWPR Q+DEDF KLSKMF+AM+SVVRVPD
Sbjct: 65  SRGGNILGADVFVPENKNVFYSRSEFVCDRIKWPRAQIDEDFLKLSKMFHAMKSVVRVPD 124

Query: 125 IDPKYKVAVLASKQEHCLVDFLYGWQEGKLPVEITCVISNHDRGPNSHVIRFLERHGIPY 184
           +DPK+K+AVLASKQEHCL+D L+ WQ+G+ P+EITCVISNH+RGPN+H+IRFLER+GIPY
Sbjct: 125 LDPKFKIAVLASKQEHCLIDLLHRWQDGRFPIEITCVISNHERGPNTHLIRFLERNGIPY 184

Query: 185 HYLC-AKENEREEELLELVQNTDFLVLARYMQPVPLQKEAYLGYKLLESLSSKGSLTSYF 243
           HYLC  KEN+RE E+L+LV++TDFLVLARYMQ                            
Sbjct: 185 HYLCTTKENKREMEILDLVKDTDFLVLARYMQ---------------------------- 216

Query: 244 NMILSGKFLRSYGKDVINIHHGLLPSFKGGKPAKQV 279
             ILSG FLRSYGKD+INIHHGLLPSFKGG P+KQ 
Sbjct: 217 --ILSGNFLRSYGKDIINIHHGLLPSFKGGHPSKQA 250

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449458970|ref|XP_004147219.1| PREDICTED: formyltetrahydrofolate deformylase-like [Cucumis sativus] gi|449504944|ref|XP_004162337.1| PREDICTED: formyltetrahydrofolate deformylase-like [Cucumis sativus]

 Score =  377 bits (967), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 183/280 (65%), Positives = 207/280 (73%), Gaps = 31/280 (11%)

Query: 1   MPLLRRLSSSLQQVVKFTNRSFKSLKFPGEPIESSVSPTLTHGIHVFHCPDEVGIVAKLS 60
           M L+RR+SSS  +V  F NRS  SL  PGE ++   S +  HGIHVFHCPD VGIVAKLS
Sbjct: 1   MALIRRVSSSFPRVFGFANRSLSSLNSPGEALDLPTSSSFAHGIHVFHCPDAVGIVAKLS 60

Query: 61  ECIASRGGNILAADVFVPEKKNVFYSRSEFIFDPIKWPREQMDEDFFKLSKMFNAMRSVV 120
           ECIAS+GGNIL AD+FVPE KNVFYSRS+F+FDP KWPR QMDEDF K+SK FNA +SVV
Sbjct: 61  ECIASKGGNILNADIFVPENKNVFYSRSQFLFDPCKWPRMQMDEDFLKISKTFNAWKSVV 120

Query: 121 RVPDIDPKYKVAVLASKQEHCLVDFLYGWQEGKLPVEITCVISNHDRGPNSHVIRFLERH 180
           RVPD DPKYK+A+ ASKQ+HCLVD L+ WQ GKLPVEITCVISNHDR PN+HV+RFLERH
Sbjct: 121 RVPDQDPKYKIAIFASKQDHCLVDLLHQWQGGKLPVEITCVISNHDRAPNTHVMRFLERH 180

Query: 181 GIPYHYL-CAKENEREEELLELVQNTDFLVLARYMQPVPLQKEAYLGYKLLESLSSKGSL 239
            I YHYL    +N+RE E+LELV+NTDFLVLARYMQ                        
Sbjct: 181 DIAYHYLHTYNDNKREGEILELVKNTDFLVLARYMQ------------------------ 216

Query: 240 TSYFNMILSGKFLRSYGKDVINIHHGLLPSFKGGKPAKQV 279
                 +LSG FLRSYG DVINIHHGLLPSFKG  P+KQ 
Sbjct: 217 ------VLSGNFLRSYGNDVINIHHGLLPSFKGSNPSKQA 250

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|358248700|ref|NP_001240181.1| uncharacterized protein LOC100780134 [Glycine max] gi|255636588|gb|ACU18632.1| unknown [Glycine max]

 Score =  369 bits (948), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 184/279 (65%), Positives = 211/279 (75%), Gaps = 41/279 (14%)

Query: 1   MPLLRRLSSSLQQVVKFTNRSFKSLKFPGEPIESSVSPTLTHGIHVFHCPDEVGIVAKLS 60
           M + RR+  ++  +VK  N SFKSL  P          +LTHGIHVFHCPD VGIVAKLS
Sbjct: 1   MAMARRVPRNVLGLVK-RNMSFKSLDPPS---------SLTHGIHVFHCPDAVGIVAKLS 50

Query: 61  ECIASRGGNILAADVFVPEKKNVFYSRSEFIFDPIKWPREQMDEDFFKLSKMFNAMRSVV 120
           +CIASRGGNILAADVFVPE K+VFYSRS+F+FDP+KWPR QM+EDF KLS+ F A+RSVV
Sbjct: 51  DCIASRGGNILAADVFVPENKHVFYSRSDFVFDPVKWPRVQMEEDFLKLSQTFKAIRSVV 110

Query: 121 RVPDIDPKYKVAVLASKQEHCLVDFLYGWQEGKLPVEITCVISNHDRGPNSHVIRFLERH 180
           RVP +DPKYK+AVLASKQ+HCLVD L+GWQ+G+LPV+ITCVISNH RG N+HVIRFLERH
Sbjct: 111 RVPALDPKYKIAVLASKQDHCLVDLLHGWQDGRLPVDITCVISNHHRGSNTHVIRFLERH 170

Query: 181 GIPYHYLC-AKENEREEELLELVQNTDFLVLARYMQPVPLQKEAYLGYKLLESLSSKGSL 239
           GIPYHYLC  KEN+RE E+L+LVQNTD LVLARYMQ                        
Sbjct: 171 GIPYHYLCTTKENKREGEILQLVQNTDILVLARYMQ------------------------ 206

Query: 240 TSYFNMILSGKFLRSYGKDVINIHHGLLPSFKGGKPAKQ 278
                 ILSG FLRSYG D+INIHHGLLPSFKGG P+KQ
Sbjct: 207 ------ILSGNFLRSYGNDIINIHHGLLPSFKGGNPSKQ 239

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224074167|ref|XP_002304283.1| formyltetrahydrofolate deformylase [Populus trichocarpa] gi|222841715|gb|EEE79262.1| formyltetrahydrofolate deformylase [Populus trichocarpa]

 Score =  369 bits (948), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 184/277 (66%), Positives = 213/277 (76%), Gaps = 43/277 (15%)

Query: 5   RRLSSSLQQVVKFTNRSFKSLKFPGEPIESSVSPT-LTHGIHVFHCPDEVGIVAKLSECI 63
           RR+SS + QV  F  RSFKS          S+ P+ +THGIHVF CPD VGIVAKLSECI
Sbjct: 6   RRVSSRIPQVFGF-GRSFKS----------SLDPSSITHGIHVFQCPDAVGIVAKLSECI 54

Query: 64  ASRGGNILAADVFVPEKKNVFYSRSEFIFDPIKWPREQMDEDFFKLSKMFNAMRSVVRVP 123
           ASRGGNIL AD+FVP+ KNVFYSRSEFIFDP+KWPR QMDEDF ++SKMF+A RSVVRVP
Sbjct: 55  ASRGGNILGADIFVPQNKNVFYSRSEFIFDPVKWPRVQMDEDFLRISKMFDATRSVVRVP 114

Query: 124 DIDPKYKVAVLASKQEHCLVDFLYGWQEGKLPVEITCVISNHDRGPNSHVIRFLERHGIP 183
            +DPK+K+AV+ASKQEHCL+D L+ WQ+G+LPV+IT VISNHDRGP++HVIRFLER+GIP
Sbjct: 115 KLDPKFKIAVIASKQEHCLIDLLHSWQDGRLPVDITRVISNHDRGPDTHVIRFLERNGIP 174

Query: 184 YHYL-CAKENEREEELLELVQNTDFLVLARYMQPVPLQKEAYLGYKLLESLSSKGSLTSY 242
           YHYL   KEN+REEE+L+LVQNTDFLVLARYMQ                           
Sbjct: 175 YHYLHTTKENKREEEILDLVQNTDFLVLARYMQ--------------------------- 207

Query: 243 FNMILSGKFLRSYGKDVINIHHGLLPSFKGGKPAKQV 279
              ILSGKFL+SYGKD+INIHHGLLPSFKGG P+KQ 
Sbjct: 208 ---ILSGKFLQSYGKDIINIHHGLLPSFKGGNPSKQA 241

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356563338|ref|XP_003549921.1| PREDICTED: formyltetrahydrofolate deformylase-like [Glycine max]

 Score =  367 bits (941), Expect = 4e-99,   Method: Compositional matrix adjust.
 Identities = 183/280 (65%), Positives = 209/280 (74%), Gaps = 41/280 (14%)

Query: 1   MPLLRRLSSSLQQVVKFTNRSFKSLKFPGEPIESSVSPTLTHGIHVFHCPDEVGIVAKLS 60
           M + RR+   +   V+  N SFKSL  P          +LTHGIHVFHCPD VGIVAKLS
Sbjct: 1   MAMARRVPRYVLGSVQ-RNMSFKSLDPPS---------SLTHGIHVFHCPDAVGIVAKLS 50

Query: 61  ECIASRGGNILAADVFVPEKKNVFYSRSEFIFDPIKWPREQMDEDFFKLSKMFNAMRSVV 120
           +CIASRGGNILAADVFVPE K VFYSRS+F+FDP+KWPR QM+EDF KLS+ FNA+RSVV
Sbjct: 51  DCIASRGGNILAADVFVPENKQVFYSRSDFVFDPVKWPRVQMEEDFLKLSQTFNAIRSVV 110

Query: 121 RVPDIDPKYKVAVLASKQEHCLVDFLYGWQEGKLPVEITCVISNHDRGPNSHVIRFLERH 180
           RVP +DPKYK+AVLASKQ+HCLVD L+GWQ+G+LPV+ITCVISNH RG N+HVIRFLERH
Sbjct: 111 RVPALDPKYKIAVLASKQDHCLVDLLHGWQDGRLPVDITCVISNHHRGSNTHVIRFLERH 170

Query: 181 GIPYHYLC-AKENEREEELLELVQNTDFLVLARYMQPVPLQKEAYLGYKLLESLSSKGSL 239
           GIPYH LC  KEN+RE E+L+L+QNTDFLVLARYMQ                        
Sbjct: 171 GIPYHCLCTTKENKREGEILQLIQNTDFLVLARYMQ------------------------ 206

Query: 240 TSYFNMILSGKFLRSYGKDVINIHHGLLPSFKGGKPAKQV 279
                 ILSG FLRSYG D+INIHHGLLPSFKGG P+KQ 
Sbjct: 207 ------ILSGNFLRSYGNDIINIHHGLLPSFKGGNPSKQA 240

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357502477|ref|XP_003621527.1| Formyltetrahydrofolate deformylase [Medicago truncatula] gi|355496542|gb|AES77745.1| Formyltetrahydrofolate deformylase [Medicago truncatula]

 Score =  355 bits (911), Expect = 1e-95,   Method: Compositional matrix adjust.
 Identities = 180/278 (64%), Positives = 210/278 (75%), Gaps = 36/278 (12%)

Query: 3   LLRRLSSSLQQVVKFTNRS-FKSLKFPGEPIESSVSPTLTHGIHVFHCPDEVGIVAKLSE 61
           ++RR+S    QV+  TN +  ++  F    +    SP+L+HGIHVFHCPD VGIVAKLSE
Sbjct: 4   VVRRVS----QVLGLTNSNKIRNFSFKSLDLPPLPSPSLSHGIHVFHCPDAVGIVAKLSE 59

Query: 62  CIASRGGNILAADVFVPEKKNVFYSRSEFIFDPIKWPREQMDEDFFKLSKMFNAMRSVVR 121
           CIASRGGNILAADVFVP+ K+VFYSRS+F+FDP+KWPR+QM+EDF KLS+ FNA RSVVR
Sbjct: 60  CIASRGGNILAADVFVPQNKHVFYSRSDFVFDPVKWPRKQMEEDFLKLSQAFNATRSVVR 119

Query: 122 VPDIDPKYKVAVLASKQEHCLVDFLYGWQEGKLPVEITCVISNHDRGPNSHVIRFLERHG 181
           VP +DPKYK+AVLASKQ+HCLVD L+GWQ+GKLPV+ITCVISNH R  N+HVIRFLERHG
Sbjct: 120 VPALDPKYKIAVLASKQDHCLVDLLHGWQDGKLPVDITCVISNHHRDSNTHVIRFLERHG 179

Query: 182 IPYHYL-CAKENEREEELLELVQNTDFLVLARYMQPVPLQKEAYLGYKLLESLSSKGSLT 240
           IPYH L    EN+RE E+LELVQNTDFLVLARYMQ                         
Sbjct: 180 IPYHCLSTTNENKREGEILELVQNTDFLVLARYMQ------------------------- 214

Query: 241 SYFNMILSGKFLRSYGKDVINIHHGLLPSFKGGKPAKQ 278
                ILSG F+RSYG D+INIHHGLLPSFKGG P+KQ
Sbjct: 215 -----ILSGNFIRSYGNDIINIHHGLLPSFKGGHPSKQ 247

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|217071818|gb|ACJ84269.1| unknown [Medicago truncatula]

 Score =  355 bits (911), Expect = 2e-95,   Method: Compositional matrix adjust.
 Identities = 180/278 (64%), Positives = 210/278 (75%), Gaps = 36/278 (12%)

Query: 3   LLRRLSSSLQQVVKFTNRS-FKSLKFPGEPIESSVSPTLTHGIHVFHCPDEVGIVAKLSE 61
           ++RR+S    QV+  TN +  ++  F    +    SP+L+HGIHVFHCPD VGIVAKLSE
Sbjct: 4   VVRRVS----QVLGLTNSNKIRNFSFKSLDLPPLPSPSLSHGIHVFHCPDAVGIVAKLSE 59

Query: 62  CIASRGGNILAADVFVPEKKNVFYSRSEFIFDPIKWPREQMDEDFFKLSKMFNAMRSVVR 121
           CIASRGGNILAADVFVP+ K+VFYSRS+F+FDP+KWPR+QM+EDF KLS+ FNA RSVVR
Sbjct: 60  CIASRGGNILAADVFVPQNKHVFYSRSDFVFDPVKWPRKQMEEDFLKLSQAFNATRSVVR 119

Query: 122 VPDIDPKYKVAVLASKQEHCLVDFLYGWQEGKLPVEITCVISNHDRGPNSHVIRFLERHG 181
           VP +DPKYK+AVLASKQ+HCLVD L+GWQ+GKLPV+ITCVISNH R  N+HVIRFLERHG
Sbjct: 120 VPALDPKYKIAVLASKQDHCLVDLLHGWQDGKLPVDITCVISNHHRDSNTHVIRFLERHG 179

Query: 182 IPYHYL-CAKENEREEELLELVQNTDFLVLARYMQPVPLQKEAYLGYKLLESLSSKGSLT 240
           IPYH L    EN+RE E+LELVQNTDFLVLARYMQ                         
Sbjct: 180 IPYHCLSTTNENKREGEILELVQNTDFLVLARYMQ------------------------- 214

Query: 241 SYFNMILSGKFLRSYGKDVINIHHGLLPSFKGGKPAKQ 278
                ILSG F+RSYG D+INIHHGLLPSFKGG P+KQ
Sbjct: 215 -----ILSGNFIRSYGNDIINIHHGLLPSFKGGHPSKQ 247

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388513597|gb|AFK44860.1| unknown [Medicago truncatula]

 Score =  355 bits (911), Expect = 2e-95,   Method: Compositional matrix adjust.
 Identities = 180/278 (64%), Positives = 210/278 (75%), Gaps = 36/278 (12%)

Query: 3   LLRRLSSSLQQVVKFTNRS-FKSLKFPGEPIESSVSPTLTHGIHVFHCPDEVGIVAKLSE 61
           ++RR+S    QV+  TN +  ++  F    +    SP+L+HGIHVFHCPD VGIVAKLSE
Sbjct: 2   VVRRVS----QVLGLTNSNKIRNFSFKSLDLPPLPSPSLSHGIHVFHCPDAVGIVAKLSE 57

Query: 62  CIASRGGNILAADVFVPEKKNVFYSRSEFIFDPIKWPREQMDEDFFKLSKMFNAMRSVVR 121
           CIASRGGNILAADVFVP+ K+VFYSRS+F+FDP+KWPR+QM+EDF KLS+ FNA RSVVR
Sbjct: 58  CIASRGGNILAADVFVPQNKHVFYSRSDFVFDPVKWPRKQMEEDFLKLSQAFNATRSVVR 117

Query: 122 VPDIDPKYKVAVLASKQEHCLVDFLYGWQEGKLPVEITCVISNHDRGPNSHVIRFLERHG 181
           VP +DPKYK+AVLASKQ+HCLVD L+GWQ+GKLPV+ITCVISNH R  N+HVIRFLERHG
Sbjct: 118 VPALDPKYKIAVLASKQDHCLVDLLHGWQDGKLPVDITCVISNHHRDSNTHVIRFLERHG 177

Query: 182 IPYHYL-CAKENEREEELLELVQNTDFLVLARYMQPVPLQKEAYLGYKLLESLSSKGSLT 240
           IPYH L    EN+RE E+LELVQNTDFLVLARYMQ                         
Sbjct: 178 IPYHCLSTTNENKREGEILELVQNTDFLVLARYMQ------------------------- 212

Query: 241 SYFNMILSGKFLRSYGKDVINIHHGLLPSFKGGKPAKQ 278
                ILSG F+RSYG D+INIHHGLLPSFKGG P+KQ
Sbjct: 213 -----ILSGNFIRSYGNDIINIHHGLLPSFKGGHPSKQ 245

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224138620|ref|XP_002326648.1| formyltetrahydrofolate deformylase [Populus trichocarpa] gi|222833970|gb|EEE72447.1| formyltetrahydrofolate deformylase [Populus trichocarpa]

 Score =  352 bits (902), Expect = 1e-94,   Method: Compositional matrix adjust.
 Identities = 172/261 (65%), Positives = 198/261 (75%), Gaps = 41/261 (15%)

Query: 20  RSFKSLKFPGEPIESSVSPTLTHGIHVFHCPDEVGIVAKLSECIASRGGNILAADVFVPE 79
           RSFKS+           S ++THGIHVF CPD VGIVAKLS+CIASRGGNIL ADVFVPE
Sbjct: 21  RSFKSID----------SSSITHGIHVFQCPDAVGIVAKLSDCIASRGGNILGADVFVPE 70

Query: 80  KKNVFYSRSEFIFDPIKWPREQMDEDFFKLSKMFNAMRSVVRVPDIDPKYKVAVLASKQE 139
            KNVFYSRSEFIFDP+KWPR QMDEDF ++SKMF+A RSVVRVP +DPK+K AVLASKQE
Sbjct: 71  NKNVFYSRSEFIFDPVKWPRLQMDEDFLRISKMFDATRSVVRVPKLDPKFKTAVLASKQE 130

Query: 140 HCLVDFLYGWQEGKLPVEITCVISNHDRGPNSHVIRFLERHGIPYHYL-CAKENEREEEL 198
           HCL+D L+ WQ+G+LPV+IT VISNHDR PN+HV+RFLER+ IPYHYL  +KEN RE+E+
Sbjct: 131 HCLIDLLHSWQDGRLPVDITRVISNHDRFPNTHVVRFLERNSIPYHYLGTSKENNREDEI 190

Query: 199 LELVQNTDFLVLARYMQPVPLQKEAYLGYKLLESLSSKGSLTSYFNMILSGKFLRSYGKD 258
           L+LVQNTDFLVLARYMQ                              +LSGKFL+ Y KD
Sbjct: 191 LDLVQNTDFLVLARYMQ------------------------------LLSGKFLQRYRKD 220

Query: 259 VINIHHGLLPSFKGGKPAKQV 279
           +INIHHGLLPSFKGG P+KQ 
Sbjct: 221 IINIHHGLLPSFKGGHPSKQA 241

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

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Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	306
TAIR|locus:2130893	328	AT4G17360 [Arabidopsis thalian	0.650	0.606	0.675	4e-85
TAIR|locus:505006677	323	AT5G47435 [Arabidopsis thalian	0.630	0.597	0.664	5.7e-84
TIGR_CMR|DET_1237	284	DET_1237 "formyltetrahydrofola	0.529	0.570	0.300	2.3e-21
TIGR_CMR|CPS_4357	286	CPS_4357 "formyltetrahydrofola	0.545	0.583	0.3	7.5e-21
UNIPROTKB|G4MX54	284	MGG_08008 "Formyltetrahydrofol	0.519	0.559	0.317	4.6e-18
TIGR_CMR|CPS_2482	292	CPS_2482 "formyltetrahydrofola	0.565	0.592	0.301	6.1e-16
TIGR_CMR|CPS_4036	292	CPS_4036 "formyltetrahydrofola	0.565	0.592	0.301	6.1e-16
TIGR_CMR|CPS_3620	292	CPS_3620 "formyltetrahydrofola	0.565	0.592	0.296	3.2e-15
UNIPROTKB|Q9KQK6	277	VC_1992 "Formyltetrahydrofolat	0.503	0.555	0.275	1.4e-13
TIGR_CMR|VC_1992	277	VC_1992 "formyltetrahydrofolat	0.503	0.555	0.275	1.4e-13

TAIR|locus:2130893 AT4G17360 [Arabidopsis thaliana (taxid:3702)]

 Score = 727 (261.0 bits), Expect = 4.0e-85, Sum P(2) = 4.0e-85
 Identities = 135/200 (67%), Positives = 160/200 (80%)

Query:    17 FTNRSFKSLKFPGEPIESSVSPTLTHGIHVFHCPDEVGIVAKLSECIASRGGNILAADVF 76
             FT  SFKS +F GE ++SSVSP L  G HVFHCPD VGIVAKLS+CIA++GGNIL  DVF
Sbjct:    19 FTKWSFKSSQFHGESLDSSVSPLLIPGFHVFHCPDVVGIVAKLSDCIAAKGGNILGYDVF 78

Query:    77 VPEKKNVFYSRSEFIFDPIKWPREQMDEDFFKLSKMFNAMRSVVRVPDIDPKYKVAVLAS 136
             VPE KNVFYSRSEFIFDP+KWPR QMDEDF  +++ F+A+ SVVRVP +DPKYK+A+L S
Sbjct:    79 VPENKNVFYSRSEFIFDPVKWPRRQMDEDFQTIAQKFSALSSVVRVPSLDPKYKIALLLS 138

Query:   137 KQEHCLVDFLYGWQEGKLPVEITCVISNHDRGPNSHVIRFLERHGIPYHYL-CAKXXXXX 195
             KQ+HCLV+ L+ WQ+GKLPV+ITCVISNH+R PN+HV+RFL+RHGI YHYL         
Sbjct:   139 KQDHCLVEMLHKWQDGKLPVDITCVISNHERAPNTHVMRFLQRHGISYHYLPTTDQNKIE 198

Query:   196 XXXXXXVQNTDFLVLARYMQ 215
                   V+ TDFLVLARYMQ
Sbjct:   199 EEILELVKGTDFLVLARYMQ 218

GO:0005739 "mitochondrion" evidence=ISM;IDA

GO:0006189 "'de novo' IMP biosynthetic process" evidence=IEA

GO:0008168 "methyltransferase activity" evidence=IEA

GO:0008864 "formyltetrahydrofolate deformylase activity" evidence=IEA;ISS

GO:0009058 "biosynthetic process" evidence=IEA;ISS

GO:0009152 "purine ribonucleotide biosynthetic process" evidence=ISS

GO:0016742 "hydroxymethyl-, formyl- and related transferase activity" evidence=IEA;ISS

GO:0009853 "photorespiration" evidence=IMP

GO:0046653 "tetrahydrofolate metabolic process" evidence=IMP

GO:0000023 "maltose metabolic process" evidence=RCA

GO:0019252 "starch biosynthetic process" evidence=RCA

GO:0043085 "positive regulation of catalytic activity" evidence=RCA

TAIR|locus:505006677 AT5G47435 [Arabidopsis thaliana (taxid:3702)]

 Score = 704 (252.9 bits), Expect = 5.7e-84, Sum P(2) = 5.7e-84
 Identities = 129/194 (66%), Positives = 156/194 (80%)

Query:    23 KSLKFPGEPIESSVSPTLTHGIHVFHCPDEVGIVAKLSECIASRGGNILAADVFVPEKKN 82
             KS +F GE ++SSVSP L  G+HVFHC D VGIVAKLS+CIA++GGNIL  DVFVPE  N
Sbjct:    20 KSSRFHGESLDSSVSPVLIPGVHVFHCQDAVGIVAKLSDCIAAKGGNILGYDVFVPENNN 79

Query:    83 VFYSRSEFIFDPIKWPREQMDEDFFKLSKMFNAMRSVVRVPDIDPKYKVAVLASKQEHCL 142
             VFYSRSEFIFDP+KWPR Q+DEDF  +++ + A+ SVVRVP IDPKYK+A+L SKQ+HCL
Sbjct:    80 VFYSRSEFIFDPVKWPRSQVDEDFQTIAQRYGALNSVVRVPSIDPKYKIALLLSKQDHCL 139

Query:   143 VDFLYGWQEGKLPVEITCVISNHDRGPNSHVIRFLERHGIPYHYLCA-KXXXXXXXXXXX 201
             V+ L+ WQ+GKLPV+ITCVISNH+R  N+HV+RFLERHGIPYHY+   K           
Sbjct:   140 VEMLHKWQDGKLPVDITCVISNHERASNTHVMRFLERHGIPYHYVSTTKENKREDDILEL 199

Query:   202 VQNTDFLVLARYMQ 215
             V++TDFLVLARYMQ
Sbjct:   200 VKDTDFLVLARYMQ 213

GO:0005739 "mitochondrion" evidence=ISM;IDA

GO:0006189 "'de novo' IMP biosynthetic process" evidence=IEA

GO:0008864 "formyltetrahydrofolate deformylase activity" evidence=IEA;ISS

GO:0009058 "biosynthetic process" evidence=IEA;ISS

GO:0009152 "purine ribonucleotide biosynthetic process" evidence=ISS

GO:0016742 "hydroxymethyl-, formyl- and related transferase activity" evidence=IEA;ISS

GO:0009853 "photorespiration" evidence=IMP

GO:0046653 "tetrahydrofolate metabolic process" evidence=IMP

TIGR_CMR|DET_1237 DET_1237 "formyltetrahydrofolate deformylase" [Dehalococcoides ethenogenes 195 (taxid:243164)]

 Score = 192 (72.6 bits), Expect = 2.3e-21, Sum P(2) = 2.3e-21
 Identities = 52/173 (30%), Positives = 80/173 (46%)

Query:    48 HCPDEVGIVAKLSECIASRGGNILAADVFVPEKKNVFYSRSEFIFDPIKWPREQMDEDFF 107
             HC D+ GI++ +S  I    GNI+  D FV    N F+ R E+        REQM+ +  
Sbjct:     9 HCTDKKGIISSISSFICRNNGNIITLDEFVDHPSNTFFMRLEWDISAFALSREQMEAEIA 68

Query:   108 KLSKMFNAMRSVVRVPDIDPKYKVAVLASKQEHCLVDFLYGWQEGKLPVEITCVISNHDR 167
              + + +       ++   D K ++AV  SK +HCL D +  ++ G+L  +I  +ISNH  
Sbjct:    69 LMGQEY-CYADNWQIFYSDRKPRLAVFVSKYDHCLWDIMLRYKAGELKCDIPLIISNH-- 125

Query:   168 GPNSHVIRFLERHGIPYHYLCAKXXXXXXXXXXXV-----QNTDFLVLARYMQ 215
              PN   +  L   GI Y  +                     + DF++LARYMQ
Sbjct:   126 -PNLKPVADL--FGIDYKVVKVTPDNKLEAENEQTCLINEYSIDFMILARYMQ 175

GO:0008864 "formyltetrahydrofolate deformylase activity" evidence=ISS

GO:0009152 "purine ribonucleotide biosynthetic process" evidence=ISS

TIGR_CMR|CPS_4357 CPS_4357 "formyltetrahydrofolate deformylase" [Colwellia psychrerythraea 34H (taxid:167879)]

 Score = 193 (73.0 bits), Expect = 7.5e-21, Sum P(2) = 7.5e-21
 Identities = 54/180 (30%), Positives = 79/180 (43%)

Query:    41 THGIHVFHCPDEVGIVAKLSECIASRGGNILAADVFVPEKKNVFYSRSEFIFDPIKWPRE 100
             TH I  + CPD  G++AK+S+ + S G  I     +       F+SR  F    +     
Sbjct:     5 THYILTWQCPDNTGVLAKVSQSLFSHGAFITETSQYSDPYSETFFSRIAFDDRNLTVSSS 64

Query:   101 QMDEDFFKLSKMFNAMRSVVRVPDIDPKYKVAVLASKQEHCLVDFLYGWQEGKLPVEITC 160
             +  +   +L+K       + +  D+ P   +AV  SK +HCLV  L  W+ G LP+ I  
Sbjct:    65 EFVKALNELAKPLAMQYQLRKRADV-PNVLIAV--SKDDHCLVSLLTKWRSGALPINIVG 121

Query:   161 VISNHDRGPNSHVIRFLERHGIPYHYLCAKXXXXXXXXXXXVQ-----NTDFLVLARYMQ 215
             VISNH      +     E H +P+++L                     N D LVLARYMQ
Sbjct:   122 VISNHQ-----YCQALSEWHNVPFYHLPVNAETKLEQEAQITDLMEELNIDLLVLARYMQ 176

GO:0008864 "formyltetrahydrofolate deformylase activity" evidence=ISS

GO:0009152 "purine ribonucleotide biosynthetic process" evidence=ISS

UNIPROTKB|G4MX54 MGG_08008 "Formyltetrahydrofolate deformylase" [Magnaporthe oryzae 70-15 (taxid:242507)]

 Score = 178 (67.7 bits), Expect = 4.6e-18, Sum P(2) = 4.6e-18
 Identities = 54/170 (31%), Positives = 81/170 (47%)

Query:    49 CPDEVGIVAKLSECIASRGGNILAADVFVPEKKNVFYSRSEFIFDPIKWPREQMDEDFFK 108
             CPD+ GIV  ++   ASR  NIL    F       F+ R  F   P+    + +  DF  
Sbjct:    13 CPDKPGIVHAVTGIFASRSVNILDLKQFSDTGSQKFFMRVHF--GPVAETAD-LSADFSA 69

Query:   109 LSKMFNAMRSVVRVPDIDPKYKVAVLASKQEHCLVDFLYGWQEGKLPVEITCVISNH-DR 167
             L+  ++ M   +R P +  K +V ++ SK  HCL D L+  Q G+L V++  ++SNH D 
Sbjct:    70 LASQYDPMTWDIR-P-VAQKTRVLIMVSKIGHCLNDLLFRAQSGRLAVDVALIVSNHPDF 127

Query:   168 GP--NSHVIRFLERHGIPYHYLCAKXXXXXXXXXXXVQNTDFLVLARYMQ 215
              P   SH + F  RH +P                   ++ + +VLARYMQ
Sbjct:   128 APLAASHGVEF--RH-LPVTKETKTQQEEEILKLAKERDVELIVLARYMQ 174

GO:0005575 "cellular_component" evidence=ND

GO:0043581 "mycelium development" evidence=IEP

TIGR_CMR|CPS_2482 CPS_2482 "formyltetrahydrofolate deformylase" [Colwellia psychrerythraea 34H (taxid:167879)]

 Score = 169 (64.5 bits), Expect = 6.1e-16, Sum P(2) = 6.1e-16
 Identities = 57/189 (30%), Positives = 85/189 (44%)

Query:    34 SSVSP-TLTHGIHVFHCPDEVGIVAKLSECIASRGGNILAADVFVPEKKNVFYSRSEFIF 92
             S + P + TH I    CP   G V  ++  +  +G  I     F     N F+ R EF  
Sbjct:     2 SDIKPVSQTH-IITADCPSRPGTVDVVTRFLCEKGFYINEIHSFDDTAVNRFFIRIEFRA 60

Query:    93 DPIK-WPREQMDEDFFKLSKMFNAMRSVVRVPDIDPKYKVAVLASKQEHCLVDFLYGWQE 151
                  +  E   ++F + +  F     +   P    K KV ++ SK +HCL D LY ++ 
Sbjct:    61 QTATDFSAETFSQEFEQRASEFEMQWQLASSPY---KSKVVIMVSKHDHCLNDLLYRYRT 117

Query:   152 GKLPVEITCVISNHDRGPNSHVIRFLERHGIPYHYL-CAKXXXXXXXXXX--XVQNTD-- 206
             G L +EI  +ISNH   P+   +   + HGIPY++L   K             +Q +D  
Sbjct:   118 GDLDIEIPAIISNH---PDLEELA--KWHGIPYYHLPITKDTKPEQEAKVWQIIQESDAD 172

Query:   207 FLVLARYMQ 215
              +VLARYMQ
Sbjct:   173 LVVLARYMQ 181

GO:0008864 "formyltetrahydrofolate deformylase activity" evidence=ISS

GO:0009152 "purine ribonucleotide biosynthetic process" evidence=ISS

TIGR_CMR|CPS_4036 CPS_4036 "formyltetrahydrofolate deformylase" [Colwellia psychrerythraea 34H (taxid:167879)]

 Score = 169 (64.5 bits), Expect = 6.1e-16, Sum P(2) = 6.1e-16
 Identities = 57/189 (30%), Positives = 85/189 (44%)

Query:    34 SSVSP-TLTHGIHVFHCPDEVGIVAKLSECIASRGGNILAADVFVPEKKNVFYSRSEFIF 92
             S + P + TH I    CP   G V  ++  +  +G  I     F     N F+ R EF  
Sbjct:     2 SDIKPVSQTH-IITADCPSRPGTVDVVTRFLCEKGFYINEIHSFDDTAVNRFFIRIEFRA 60

Query:    93 DPIK-WPREQMDEDFFKLSKMFNAMRSVVRVPDIDPKYKVAVLASKQEHCLVDFLYGWQE 151
                  +  E   ++F + +  F     +   P    K KV ++ SK +HCL D LY ++ 
Sbjct:    61 QTATDFSAETFSQEFEQRASEFEMQWQLASSPY---KSKVVIMVSKHDHCLNDLLYRYRT 117

Query:   152 GKLPVEITCVISNHDRGPNSHVIRFLERHGIPYHYL-CAKXXXXXXXXXX--XVQNTD-- 206
             G L +EI  +ISNH   P+   +   + HGIPY++L   K             +Q +D  
Sbjct:   118 GDLDIEIPAIISNH---PDLEELA--KWHGIPYYHLPITKDTKPEQEAKVWQIIQESDAD 172

Query:   207 FLVLARYMQ 215
              +VLARYMQ
Sbjct:   173 LVVLARYMQ 181

GO:0008864 "formyltetrahydrofolate deformylase activity" evidence=ISS

GO:0009152 "purine ribonucleotide biosynthetic process" evidence=ISS

TIGR_CMR|CPS_3620 CPS_3620 "formyltetrahydrofolate deformylase" [Colwellia psychrerythraea 34H (taxid:167879)]

 Score = 163 (62.4 bits), Expect = 3.2e-15, Sum P(2) = 3.2e-15
 Identities = 56/189 (29%), Positives = 88/189 (46%)

Query:    34 SSVSP-TLTHGIHVFHCPDEVGIVAKLSECIASRGGNILAADVFVPEKKNVFYSRSEFIF 92
             S + P + TH I    CP + G V  ++  +  +G  I     F    ++ F+ R EF  
Sbjct:     2 SDIKPVSQTHVITA-SCPSQPGTVDVVTRFLFEQGFYINEIHSFDDTDQDRFFIRIEFRA 60

Query:    93 DPI-KWPREQMDEDFFKLSKMFNAMRSVVRVPDIDPKYKVAVLASKQEHCLVDFLYGWQE 151
             D    + R+   + F + +  F     +   P    K KV ++ SK +HCL D LY ++ 
Sbjct:    61 DTATNFNRDDFCQQFGERASEFEMKWELASSPY---KSKVVIMVSKHDHCLNDLLYRYRT 117

Query:   152 GKLPVEITCVISNHDRGPNSHVIRFLERHGIPYHYL-CAKXXX--XXXXXXXXVQNT--D 206
             G L +EI  +ISNH   P+   +   + H IPY++L   K             +Q++  D
Sbjct:   118 GDLNIEIPAIISNH---PDLEDLA--KWHDIPYYHLPITKETKPEQEAKVFQIIQDSEAD 172

Query:   207 FLVLARYMQ 215
              +VLARYMQ
Sbjct:   173 LVVLARYMQ 181

GO:0008864 "formyltetrahydrofolate deformylase activity" evidence=ISS

GO:0009152 "purine ribonucleotide biosynthetic process" evidence=ISS

UNIPROTKB|Q9KQK6 VC_1992 "Formyltetrahydrofolate deformylase" [Vibrio cholerae O1 biovar El Tor str. N16961 (taxid:243277)]

 Score = 150 (57.9 bits), Expect = 1.4e-13, Sum P(2) = 1.4e-13
 Identities = 48/174 (27%), Positives = 76/174 (43%)

Query:    48 HCPDEVGIVAKLSECIASRGGNILAADVFVPEKKNVFYSRSEFIFDPIKWPREQMDEDFF 107
             HCPD  G+++K++        NI+  + FV      F+ R+E          E    D  
Sbjct:     9 HCPDAPGLISKITNICYKHQLNIIHNNEFVDNASGHFFMRTEL---------EGYFNDAT 59

Query:   108 KLSKMFNAMRSVVRVPDIDPKYK-VAVLASKQEHCLVDFLYGWQEGKLPVEITCVISNHD 166
              L+ + +A+    R   I    K + +L +K+ HCL D L    +G L V+I  V+ N+D
Sbjct:    60 LLADLDHALPQGTRRKLISSSRKRIVILVTKEAHCLGDILMKNYDGSLDVDIAAVVGNYD 119

Query:   167 RGPNSHVIRFLERHGIPYHYLCAKXXXXXXXXXXXVQ-----NTDFLVLARYMQ 215
                   + R  ER  IPYH +  +           +        D+LVLA+YM+
Sbjct:   120 T-----LQRLTERFDIPYHCVSHEGLSREAHEQALLDVIDQYQPDYLVLAKYMR 168

GO:0008864 "formyltetrahydrofolate deformylase activity" evidence=ISS

GO:0009152 "purine ribonucleotide biosynthetic process" evidence=ISS

TIGR_CMR|VC_1992 VC_1992 "formyltetrahydrofolate deformylase" [Vibrio cholerae O1 biovar El Tor (taxid:686)]

 Score = 150 (57.9 bits), Expect = 1.4e-13, Sum P(2) = 1.4e-13
 Identities = 48/174 (27%), Positives = 76/174 (43%)

Query:    48 HCPDEVGIVAKLSECIASRGGNILAADVFVPEKKNVFYSRSEFIFDPIKWPREQMDEDFF 107
             HCPD  G+++K++        NI+  + FV      F+ R+E          E    D  
Sbjct:     9 HCPDAPGLISKITNICYKHQLNIIHNNEFVDNASGHFFMRTEL---------EGYFNDAT 59

Query:   108 KLSKMFNAMRSVVRVPDIDPKYK-VAVLASKQEHCLVDFLYGWQEGKLPVEITCVISNHD 166
              L+ + +A+    R   I    K + +L +K+ HCL D L    +G L V+I  V+ N+D
Sbjct:    60 LLADLDHALPQGTRRKLISSSRKRIVILVTKEAHCLGDILMKNYDGSLDVDIAAVVGNYD 119

Query:   167 RGPNSHVIRFLERHGIPYHYLCAKXXXXXXXXXXXVQ-----NTDFLVLARYMQ 215
                   + R  ER  IPYH +  +           +        D+LVLA+YM+
Sbjct:   120 T-----LQRLTERFDIPYHCVSHEGLSREAHEQALLDVIDQYQPDYLVLAKYMR 168

GO:0008864 "formyltetrahydrofolate deformylase activity" evidence=ISS

GO:0009152 "purine ribonucleotide biosynthetic process" evidence=ISS

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Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

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Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	gw1.III.1082.1	formyltetrahydrofolate deformylase (EC-2.1.2.2 3.5.1.10) (299 aa)
		(Populus trichocarpa)
Predicted Functional Partners:
	gdcT1	precursor of carboxylase t-protein 1, glycine decarboxylase complex (EC-2.1.2.10); The glycine [...] (409 aa)						•	•		0.932
	gdcT2	RecName- Full=Aminomethyltransferase; EC=2.1.2.10;; The glycine cleavage system catalyzes the d [...] (409 aa)						•	•		0.932
	SHMT6	RecName- Full=Serine hydroxymethyltransferase; EC=2.1.2.1;; Interconversion of serine and glyci [...] (472 aa)						•	•		0.913
	SHMT1	RecName- Full=Serine hydroxymethyltransferase; EC=2.1.2.1;; Interconversion of serine and glyci [...] (472 aa)						•	•		0.913
	SHMT8	serine hydroxymethyltransferase 8 (EC-2.1.2.1); Interconversion of serine and glycine (By simil [...] (530 aa)						•	•		0.913
	GART	hypothetical protein (215 aa)			•			•	•	•	0.913
	SHMT3	precursor of transferase serine hydroxymethyltransferase 3 (EC-2.1.2.1); Interconversion of ser [...] (516 aa)						•	•		0.912
	SHMT2	precursor of transferase serine hydroxymethyltransferase 2 (EC-2.1.2.1); Interconversion of ser [...] (518 aa)						•	•		0.911
	SHMT7	precursor of transferase serine hydroxymethyltransferase 7 (EC-2.1.2.1); Interconversion of ser [...] (521 aa)						•	•		0.911
	FDH1	SubName- Full=Putative uncharacterized protein; (387 aa)						•	•		0.904

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Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	306
PLN02828	268	PLN02828, PLN02828, formyltetrahydrofolate deformy	1e-131
PRK06027	286	PRK06027, purU, formyltetrahydrofolate deformylase	6e-59
COG0788	287	COG0788, PurU, Formyltetrahydrofolate hydrolase [N	3e-56
cd08648	196	cd08648, FMT_core_Formyl-FH4-Hydrolase_C, Formylte	4e-49
TIGR00655	280	TIGR00655, PurU, formyltetrahydrofolate deformylas	2e-44
PRK13011	286	PRK13011, PRK13011, formyltetrahydrofolate deformy	4e-38
PRK13010	289	PRK13010, purU, formyltetrahydrofolate deformylase	2e-33
cd08645	183	cd08645, FMT_core_GART, Phosphoribosylglycinamide	5e-18
cd04875	74	cd04875, ACT_F4HF-DF, N-terminal ACT domain of for	1e-17
COG0299	200	COG0299, PurN, Folate-dependent phosphoribosylglyc	6e-15
pfam00551	181	pfam00551, Formyl_trans_N, Formyl transferase	1e-14
PRK05647	200	PRK05647, purN, phosphoribosylglycinamide formyltr	4e-13
cd08369	173	cd08369, FMT_core, Formyltransferase, catalytic co	1e-10
TIGR00639	190	TIGR00639, PurN, phosphoribosylglycinamide formylt	8e-09
cd02116	60	cd02116, ACT, ACT domains are commonly involved in	0.002

>gnl|CDD|178422 PLN02828, PLN02828, formyltetrahydrofolate deformylase

 Score =  373 bits (960), Expect = e-131
 Identities = 150/221 (67%), Positives = 174/221 (78%), Gaps = 31/221 (14%)

Query: 59  LSECIASRGGNILAADVFVPEKKNVFYSRSEFIFDPIKWPREQMDEDFFKLSKMFNAMRS 118
           LS+CIASRGGNIL  DVFVPE KNVFYSRSEFIFDP+KWPR QMDEDF ++SK F A++S
Sbjct: 1   LSDCIASRGGNILGVDVFVPENKNVFYSRSEFIFDPVKWPRAQMDEDFQEISKHFKALKS 60

Query: 119 VVRVPDIDPKYKVAVLASKQEHCLVDFLYGWQEGKLPVEITCVISNHDRGPNSHVIRFLE 178
           VVRVP +DPKYK+AVLASKQ+HCL+D L+ WQ+G+LPV+ITCVISNH+RGPN+HV+RFLE
Sbjct: 61  VVRVPGLDPKYKIAVLASKQDHCLIDLLHRWQDGRLPVDITCVISNHERGPNTHVMRFLE 120

Query: 179 RHGIPYHYLC-AKENEREEELLELVQNTDFLVLARYMQPVPLQKEAYLGYKLLESLSSKG 237
           RHGIPYHYL   KEN+RE+E+LELV+ TDFLVLARYMQ                      
Sbjct: 121 RHGIPYHYLPTTKENKREDEILELVKGTDFLVLARYMQ---------------------- 158

Query: 238 SLTSYFNMILSGKFLRSYGKDVINIHHGLLPSFKGGKPAKQ 278
                   ILSG FL+ YGKD+INIHHGLLPSFKGG P+KQ
Sbjct: 159 --------ILSGNFLKGYGKDIINIHHGLLPSFKGGNPSKQ 191

Length = 268

>gnl|CDD|235676 PRK06027, purU, formyltetrahydrofolate deformylase; Reviewed

 Score =  189 bits (484), Expect = 6e-59
 Identities = 89/235 (37%), Positives = 119/235 (50%), Gaps = 43/235 (18%)

Query: 49  CPDEVGIVAKLSECIASRGGNILAADVFVPEKKNVFYSRSEFIFDPIKWPREQMDEDFFK 108
           CPD  GIVA +S  +   GGNI+ AD FV  +   F+ R EF  D + +  E +  DF  
Sbjct: 13  CPDRPGIVAAVSNFLYEHGGNIVDADQFVDPETGRFFMRVEFEGDGLIFNLETLRADFAA 72

Query: 109 LSKMFNAMRSVVRVPDIDPKYKVAVLASKQEHCLVDFLYGWQEGKLPVEITCVISNHDRG 168
           L++ F       R+ D   + +V +L SK++HCL D L+ W+ G+LPVEI  VISNHD  
Sbjct: 73  LAEEFEM---DWRLLDSAERKRVVILVSKEDHCLGDLLWRWRSGELPVEIAAVISNHD-- 127

Query: 169 PNSHVIRFLERHGIPYHYLCA-KEN--EREEELLELVQ--NTDFLVLARYMQPVPLQKEA 223
               +   +ER GIP+H++   KE   E E  LLEL+     D +VLARYMQ        
Sbjct: 128 ---DLRSLVERFGIPFHHVPVTKETKAEAEARLLELIDEYQPDLVVLARYMQ-------- 176

Query: 224 YLGYKLLESLSSKGSLTSYFNMILSGKFLRSYGKDVINIHHGLLPSFKGGKPAKQ 278
                                 ILS  F+  +   +INIHH  LP+FKG KP  Q
Sbjct: 177 ----------------------ILSPDFVARFPGRIINIHHSFLPAFKGAKPYHQ 209

Length = 286

>gnl|CDD|223859 COG0788, PurU, Formyltetrahydrofolate hydrolase [Nucleotide transport and metabolism]

 Score =  183 bits (466), Expect = 3e-56
 Identities = 86/247 (34%), Positives = 118/247 (47%), Gaps = 43/247 (17%)

Query: 37  SPTLTHGIHVFHCPDEVGIVAKLSECIASRGGNILAADVFVPEKKNVFYSRSEFIFDPIK 96
           S      I    CPD+ GIVA +S  +A  G NI+ +D F   +   F+ R EF  +   
Sbjct: 2   SNEPDTFILTVSCPDQPGIVAAISGFLAEHGCNIVDSDQFDDPETGRFFMRVEFEGEGGP 61

Query: 97  WPREQMDEDFFKLSKMFNAMRSVVRVPDIDPKYKVAVLASKQEHCLVDFLYGWQEGKLPV 156
             RE +   F  L++ F       R+ D   + ++A+L SK++HCL D LY W+ G+LP 
Sbjct: 62  LDREALRAAFAPLAEEFGMD---WRLHDAAQRKRIAILVSKEDHCLGDLLYRWRIGELPA 118

Query: 157 EITCVISNHDRGPNSHVIRFLERHGIPYHYL-CAKEN--EREEELLELVQ--NTDFLVLA 211
           EI  VISNHD      +   +ER  IP+H++   KEN  E E  LLEL++    D +VLA
Sbjct: 119 EIVAVISNHD-----DLRPLVERFDIPFHHIPVTKENKAEAEARLLELLEEYGADLVVLA 173

Query: 212 RYMQPVPLQKEAYLGYKLLESLSSKGSLTSYFNMILSGKFLRSYGKDVINIHHGLLPSFK 271
           RYMQ                              ILS  F+  +   +INIHH  LP+F 
Sbjct: 174 RYMQ------------------------------ILSPDFVERFPGKIINIHHSFLPAFI 203

Query: 272 GGKPAKQ 278
           G  P  Q
Sbjct: 204 GANPYHQ 210

Length = 287

>gnl|CDD|187717 cd08648, FMT_core_Formyl-FH4-Hydrolase_C, Formyltetrahydrofolate deformylase (Formyl-FH4 hydrolase), C-terminal hydrolase domain

 Score =  161 bits (410), Expect = 4e-49
 Identities = 57/155 (36%), Positives = 72/155 (46%), Gaps = 40/155 (25%)

Query: 129 YKVAVLASKQEHCLVDFLYGWQEGKLPVEITCVISNHDRGPNSHVIRFLERHGIPYHYL- 187
            +VA+  SK++HCL D L+ W+EG+LP EI  VISNH            ER GIP+H++ 
Sbjct: 1   KRVAIFVSKEDHCLYDLLHRWREGELPCEIPLVISNHPDL-----RPLAERFGIPFHHIP 55

Query: 188 ----CAKENEREEELLELVQNTDFLVLARYMQPVPLQKEAYLGYKLLESLSSKGSLTSYF 243
                  E E E+  L      D +VLARYMQ                            
Sbjct: 56  VTKDTKAEAEAEQLELLEEYGVDLVVLARYMQ---------------------------- 87

Query: 244 NMILSGKFLRSYGKDVINIHHGLLPSFKGGKPAKQ 278
             ILS  F+  Y   +INIHH  LP+FKG KP  Q
Sbjct: 88  --ILSPDFVERYPNRIINIHHSFLPAFKGAKPYHQ 120

Formyl-FH4 Hydrolase catalyzes the hydrolysis of 10-formyltetrahydrofolate (formyl-FH4) to FH4 and formate. Formate is the substrate of phosphoribosylglycinamide transformylase for step three of de novo purine nucleotide synthesis. Formyl-FH4 hydrolase has been proposed to regulate the balance of FH4 and C1-FH4 in the cell. The enzyme uses methionine and glycine to sense the pools of C1-FH4 and FH4, respectively. This domain belongs to the formyltransferase (FMT) domain superfamily. Members of this family have an N-terminal ACT domain, which is commonly involved in specifically bind an amino acid or other small ligand leading to regulation of the enzyme. The N-terminal of this protein family may be responsible for the binding of the regulators methionine and glycine. Length = 196

>gnl|CDD|233074 TIGR00655, PurU, formyltetrahydrofolate deformylase

 Score =  152 bits (385), Expect = 2e-44
 Identities = 78/235 (33%), Positives = 110/235 (46%), Gaps = 42/235 (17%)

Query: 49  CPDEVGIVAKLSECIASRGGNILAADVFVPEKKNVFYSRSEFIFDPIKWPREQMDEDFFK 108
           CPD+ G+VA +S  IA  G NI++ D     +   F+ R EF  +  +     +   F  
Sbjct: 7   CPDQKGLVAAISTFIAKHGANIISNDQHTDPETGRFFMRVEFQLEGFRLEESSLLAAFKS 66

Query: 109 LSKMFNAMRSVVRVPDIDPKYKVAVLASKQEHCLVDFLYGWQEGKLPVEITCVISNHDRG 168
                  M     +   D   +VA+L SK++HCL D L+ W  G+L  EI  VISNH+  
Sbjct: 67  ALAEKFEM--TWELILADKLKRVAILVSKEDHCLGDLLWRWYSGELDAEIALVISNHEDL 124

Query: 169 PNSHVIRFLERHGIPYHYL-CAKEN--EREEELLELVQ--NTDFLVLARYMQPVPLQKEA 223
             S V RF    GIP+HY+   K+N  E E+  LEL++    D +VLA+YMQ        
Sbjct: 125 -RSLVERF----GIPFHYIPATKDNRVEHEKRQLELLKQYQVDLVVLAKYMQ-------- 171

Query: 224 YLGYKLLESLSSKGSLTSYFNMILSGKFLRSYGKDVINIHHGLLPSFKGGKPAKQ 278
                                 ILS  F++ Y   +INIHH  LP+F G  P ++
Sbjct: 172 ----------------------ILSPDFVKRYPNKIINIHHSFLPAFIGANPYQR 204

This model describes formyltetrahydrofolate deformylases. The enzyme is a homohexamer. Sequences from a related enzyme formyl tetrahydrofolate-specific enzyme, phosphoribosylglycinamide formyltransferase, serve as an outgroup for phylogenetic analysis. Putative members of this family, scoring below the trusted cutoff, include a sequence from Rhodobacter capsulatus that lacks an otherwise conserved C-terminal region [Purines, pyrimidines, nucleosides, and nucleotides, Purine ribonucleotide biosynthesis]. Length = 280

>gnl|CDD|237266 PRK13011, PRK13011, formyltetrahydrofolate deformylase; Reviewed

 Score =  135 bits (343), Expect = 4e-38
 Identities = 71/239 (29%), Positives = 104/239 (43%), Gaps = 50/239 (20%)

Query: 48  HCPDEVGIVAKLSECIASRGGNILAADVFVPEKKNVFYSRSEFIFDPIKWPREQMDEDFF 107
            CP   GIVA ++  +A  G  I     F       F+ R EF  +      E +DED  
Sbjct: 13  SCPSAAGIVAAVTGFLAEHGCYITELHSFDDRLSGRFFMRVEFHSE------EGLDEDAL 66

Query: 108 K--LSKMFNAMRSVVRVPDIDPKYKVAVLASKQEHCLVDFLYGWQEGKLPVEITCVISNH 165
           +   + +         + D   + KV ++ SK +HCL D LY W+ G+LP++I  V+SNH
Sbjct: 67  RAGFAPIAARFGMQWELHDPAARPKVLIMVSKFDHCLNDLLYRWRIGELPMDIVGVVSNH 126

Query: 166 -DRGPNSHVIRFLERHGIPYHYL-CAKEN--EREEELLELVQ--NTDFLVLARYMQPVPL 219
            D  P          HGIP+H+     +   ++E ++L++V+    + +VLARYMQ    
Sbjct: 127 PDLEP------LAAWHGIPFHHFPITPDTKPQQEAQVLDVVEESGAELVVLARYMQ---- 176

Query: 220 QKEAYLGYKLLESLSSKGSLTSYFNMILSGKFLRSYGKDVINIHHGLLPSFKGGKPAKQ 278
                                     +LS +  R      INIHH  LP FKG KP  Q
Sbjct: 177 --------------------------VLSPELCRKLAGRAINIHHSFLPGFKGAKPYHQ 209

Length = 286

>gnl|CDD|139334 PRK13010, purU, formyltetrahydrofolate deformylase; Reviewed

 Score =  124 bits (312), Expect = 2e-33
 Identities = 70/237 (29%), Positives = 112/237 (47%), Gaps = 46/237 (19%)

Query: 49  CPDEVGIVAKLSECIASRGGNILAADVFVPEKKNVFYSRSEFIFDPIK-WPREQMDEDFF 107
           CP   GIVA +S  +A +G  I+    F  ++   F+ R  F     +    +   ++F 
Sbjct: 16  CPSAPGIVAAVSGFLAEKGCYIVELTQFDDDESGRFFMRVSFHAQSAEAASVDTFRQEFQ 75

Query: 108 KLSKMFNAMRSVVRVPDIDPKYKVAVLASKQEHCLVDFLYGWQEGKLPVEITCVISNH-D 166
            +++ F+   ++        + KV ++ SK +HCL D LY W+ G+L ++I  +ISNH D
Sbjct: 76  PVAEKFDMQWAIHPDGQ---RPKVVIMVSKFDHCLNDLLYRWRMGELDMDIVGIISNHPD 132

Query: 167 RGPNSHVIRFLERHGIPYHYL-CAKEN--EREEELLELVQ--NTDFLVLARYMQPVPLQK 221
             P +        H IP+H+L    +   ++E ++L+L++    + +VLARYMQ      
Sbjct: 133 LQPLAVQ------HDIPFHHLPVTPDTKAQQEAQILDLIETSGAELVVLARYMQ------ 180

Query: 222 EAYLGYKLLESLSSKGSLTSYFNMILSGKFLRSYGKDVINIHHGLLPSFKGGKPAKQ 278
                  L + LS K          LSG+         INIHH  LP FKG +P  Q
Sbjct: 181 ------VLSDDLSRK----------LSGR--------AINIHHSFLPGFKGARPYHQ 213

Length = 289

>gnl|CDD|187714 cd08645, FMT_core_GART, Phosphoribosylglycinamide formyltransferase (GAR transformylase, GART)

 Score = 79.7 bits (198), Expect = 5e-18
 Identities = 46/161 (28%), Positives = 70/161 (43%), Gaps = 49/161 (30%)

Query: 130 KVAVLASK-----QEHCLVDFLYGWQEGKLPVEITCVISNHDRGPNSHVIRFLERHGIPY 184
           ++AVLAS      Q   L+D +   + GKL  EI  VISN+   P+++ +   ++ GIP 
Sbjct: 1   RIAVLASGSGSNLQA--LIDAI---KSGKLNAEIVLVISNN---PDAYGLERAKKAGIPT 52

Query: 185 HYL----CAKENEREEELLELVQ--NTDFLVLARYMQPVPLQKEAYLGYKLLESLSSKGS 238
             +         E +E LLEL++    D +VLA +M+                       
Sbjct: 53  FVINRKDFPSREEFDEALLELLKEYKVDLIVLAGFMR----------------------- 89

Query: 239 LTSYFNMILSGKFLRSYGKDVINIHHGLLPSFKGGKPAKQV 279
                  ILS +FL ++   +INIH  LLP F G    +  
Sbjct: 90  -------ILSPEFLEAFPGRIINIHPSLLPKFYGLHAHEAA 123

Phosphoribosylglycinamide formyltransferase, also known as GAR transformylase or GART, is an essential enzyme that catalyzes the third step in de novo purine biosynthesis. This enzyme uses formyl tetrahydrofolate as a formyl group donor to produce 5'-phosphoribosyl-N-formylglycinamide. In prokaryotes, GART is a single domain protein but in most eukaryotes it is the C-terminal portion of a large multifunctional protein which also contains GAR synthetase and aminoimidazole ribonucleotide synthetase activities. Length = 183

>gnl|CDD|153147 cd04875, ACT_F4HF-DF, N-terminal ACT domain of formyltetrahydrofolate deformylase (F4HF-DF; formyltetrahydrofolate hydrolase)

 Score = 75.7 bits (187), Expect = 1e-17
 Identities = 25/72 (34%), Positives = 36/72 (50%)

Query: 44  IHVFHCPDEVGIVAKLSECIASRGGNILAADVFVPEKKNVFYSRSEFIFDPIKWPREQMD 103
           I    CPD  GIVA +S  +A  GGNI+ +D FV      F+ R EF  +     RE ++
Sbjct: 1   ILTLSCPDRPGIVAAVSGFLAEHGGNIVESDQFVDPDSGRFFMRVEFELEGFDLSREALE 60

Query: 104 EDFFKLSKMFNA 115
             F  ++  F+ 
Sbjct: 61  AAFAPVAAEFDM 72

This CD includes the N-terminal ACT domain of formyltetrahydrofolate deformylase (F4HF-DF; formyltetrahydrofolate hydrolase) which catalyzes the hydrolysis of 10-formyltetrahydrofolate (formyl-FH4) to FH4 and formate. Formyl-FH4 hydrolase generates the formate that is used by purT-encoded 5'-phosphoribosylglycinamide transformylase for step three of de novo purine nucleotide synthesis. Formyl-FH4 hydrolase, a hexamer which is activated by methionine and inhibited by glycine, is proposed to regulate the balance FH4 and C1-FH4 in response to changing growth conditions. Members of this CD belong to the superfamily of ACT regulatory domains. Length = 74

>gnl|CDD|223376 COG0299, PurN, Folate-dependent phosphoribosylglycinamide formyltransferase PurN [Nucleotide transport and metabolism]

 Score = 71.5 bits (176), Expect = 6e-15
 Identities = 40/157 (25%), Positives = 59/157 (37%), Gaps = 55/157 (35%)

Query: 130 KVAVLASKQ--------EHCLVDFLYGWQEGKLPVEITCVISNHDRGPNSHVIRFLERHG 181
           K+AVLAS          +          + GKL  EI  VIS+     +++ +    + G
Sbjct: 2   KIAVLASGNGSNLQAIIDAI--------KGGKLDAEIVAVISDK---ADAYALERAAKAG 50

Query: 182 IPYHYLCAKENE----REEELLELVQN--TDFLVLARYMQPVPLQKEAYLGYKLLESLSS 235
           IP   L  KE       +  L+E +     D +VLA YM+                    
Sbjct: 51  IPTVVLDRKEFPSREAFDRALVEALDEYGPDLVVLAGYMR-------------------- 90

Query: 236 KGSLTSYFNMILSGKFLRSYGKDVINIHHGLLPSFKG 272
                     IL  +FL  +   ++NIH  LLP+F G
Sbjct: 91  ----------ILGPEFLSRFEGRILNIHPSLLPAFPG 117

Length = 200

>gnl|CDD|144222 pfam00551, Formyl_trans_N, Formyl transferase

 Score = 70.1 bits (172), Expect = 1e-14
 Identities = 40/157 (25%), Positives = 65/157 (41%), Gaps = 41/157 (26%)

Query: 130 KVAVLASKQEHCLVDFLYGWQEGKLPVEITCVISNHDRGPNSHVIRFLERHGIPYHYLCA 189
           K+AVL S     L   L   ++G   VEI  V++N D+      +   E+ GIP   +  
Sbjct: 2   KIAVLISGTGSNLQALLDALRKGGHEVEIVAVVTNKDKA---AGLERAEQAGIPVE-VFE 57

Query: 190 KEN-----EREEELLELVQ--NTDFLVLARYMQPVPLQKEAYLGYKLLESLSSKGSLTSY 242
            +N     + + EL + +     D +VLA YM+                           
Sbjct: 58  HKNFTPRSQFDSELADSLAALAPDLIVLAGYMR--------------------------- 90

Query: 243 FNMILSGKFLRSYGKDVINIHHGLLPSFKGGKPAKQV 279
              IL  +FL+++   ++NIH  LLP F+G  P ++ 
Sbjct: 91  ---ILPPEFLQAFPGKILNIHPSLLPRFRGAAPIQRA 124

This family includes the following members. Glycinamide ribonucleotide transformylase catalyzes the third step in de novo purine biosynthesis, the transfer of a formyl group to 5'-phosphoribosylglycinamide. Formyltetrahydrofolate deformylase produces formate from formyl- tetrahydrofolate. Methionyl-tRNA formyltransferase transfers a formyl group onto the amino terminus of the acyl moiety of the methionyl aminoacyl-tRNA. Inclusion of the following members is supported by PSI-blast. HOXX_BRAJA contains a related domain of unknown function. PRTH_PORGI contains a related domain of unknown function. Y09P_MYCTU (Q50721) contains a related domain of unknown function. Length = 181

>gnl|CDD|235544 PRK05647, purN, phosphoribosylglycinamide formyltransferase; Reviewed

 Score = 66.7 bits (164), Expect = 4e-13
 Identities = 44/154 (28%), Positives = 63/154 (40%), Gaps = 49/154 (31%)

Query: 130 KVAVLASK-----QEHCLVDFLYGWQEGKLPVEITCVISNHDRGPNSHVIRFLERHGIPY 184
           ++ VLAS      Q   ++D       G+LP EI  VIS+    P+++ +   E  GIP 
Sbjct: 3   RIVVLASGNGSNLQ--AIID---ACAAGQLPAEIVAVISDR---PDAYGLERAEAAGIPT 54

Query: 185 HYLCAKENE-REE---ELLELVQ--NTDFLVLARYMQPVPLQKEAYLGYKLLESLSSKGS 238
             L  K+   RE     L+E +     D +VLA +M+                       
Sbjct: 55  FVLDHKDFPSREAFDAALVEALDAYQPDLVVLAGFMR----------------------- 91

Query: 239 LTSYFNMILSGKFLRSYGKDVINIHHGLLPSFKG 272
                  IL   F+ +Y   +INIH  LLPSF G
Sbjct: 92  -------ILGPTFVSAYEGRIINIHPSLLPSFPG 118

Length = 200

>gnl|CDD|187712 cd08369, FMT_core, Formyltransferase, catalytic core domain

 Score = 58.8 bits (143), Expect = 1e-10
 Identities = 27/145 (18%), Positives = 43/145 (29%), Gaps = 35/145 (24%)

Query: 131 VAVLASKQEHCLVDFLYGWQEGKLPVEITCVISNHDRGPNSHVIRFLERHGIPYHYLCAK 190
           + +L S   +     L      +   EI  V+++ D    +  +      G  Y      
Sbjct: 1   IVILGSG--NIGQRVLKALLSKEG-HEIVGVVTHPDSPRGTAQLSLELVGGKVYLDSNIN 57

Query: 191 ENEREEELLELVQNTDFLVLARYMQPVPLQKEAYLGYKLLESLSSKGSLTSYFNMILSGK 250
             E  E L E     D +V   + Q                              I+  +
Sbjct: 58  TPELLELLKEF--APDLIVSINFRQ------------------------------IIPPE 85

Query: 251 FLRSYGKDVINIHHGLLPSFKGGKP 275
            L+      INIH  LLP ++G  P
Sbjct: 86  ILKLPPGGAINIHPSLLPRYRGVNP 110

Formyltransferase, catalytic core domain. The proteins of this superfamily contain a formyltransferase domain that hydrolyzes the removal of a formyl group from its substrate as part of a multistep transfer mechanism, and this alignment model represents the catalytic core of the formyltransferase domain. This family includes the following known members; Glycinamide Ribonucleotide Transformylase (GART), Formyl-FH4 Hydrolase, Methionyl-tRNA Formyltransferase, ArnA, and 10-Formyltetrahydrofolate Dehydrogenase (FDH). Glycinamide Ribonucleotide Transformylase (GART) catalyzes the third step in de novo purine biosynthesis, the transfer of a formyl group to 5'-phosphoribosylglycinamide. Formyl-FH4 Hydrolase catalyzes the hydrolysis of 10-formyltetrahydrofolate (formyl-FH4) to FH4 and formate. Methionyl-tRNA Formyltransferase transfers a formyl group onto the amino terminus of the acyl moiety of the methionyl aminoacyl-tRNA, which plays important role in translation initiation. ArnA is required for the modification of lipid A with 4-amino-4-deoxy-l-arabinose (Ara4N) that leads to resistance to cationic antimicrobial peptides (CAMPs) and clinical antimicrobials such as polymyxin. 10-formyltetrahydrofolate dehydrogenase (FDH) catalyzes the conversion of 10-formyltetrahydrofolate, a precursor for nucleotide biosynthesis, to tetrahydrofolate. Members of this family are multidomain proteins. The formyltransferase domain is located at the N-terminus of FDH, Methionyl-tRNA Formyltransferase and ArnA, and at the C-terminus of Formyl-FH4 Hydrolase. Prokaryotic Glycinamide Ribonucleotide Transformylase (GART) is a single domain protein while eukaryotic GART is a trifunctional protein that catalyzes the second, third and fifth steps in de novo purine biosynthesis. Length = 173

>gnl|CDD|161973 TIGR00639, PurN, phosphoribosylglycinamide formyltransferase, formyltetrahydrofolate-dependent

 Score = 54.3 bits (131), Expect = 8e-09
 Identities = 36/149 (24%), Positives = 61/149 (40%), Gaps = 39/149 (26%)

Query: 130 KVAVLASKQEHCLVDFLYGWQEGKLPVEITCVISNHDRGPNSHVIRFLERHGIPYHYLCA 189
           ++ VL S     L   +   +EGK+P  +  VISN    P+++ +    + GIP   L  
Sbjct: 2   RIVVLISGNGSNLQAIIDACKEGKIPASVVLVISNK---PDAYGLERAAQAGIPTFVLSL 58

Query: 190 KE----NEREEELLELVQ--NTDFLVLARYMQPVPLQKEAYLGYKLLESLSSKGSLTSYF 243
           K+       ++ ++E ++    D +VLA +M+                            
Sbjct: 59  KDFPSREAFDQAIIEELRAHEVDLVVLAGFMR---------------------------- 90

Query: 244 NMILSGKFLRSYGKDVINIHHGLLPSFKG 272
             IL   FL  +   ++NIH  LLP+F G
Sbjct: 91  --ILGPTFLSRFAGRILNIHPSLLPAFPG 117

This model describes phosphoribosylglycinamide formyltransferase (GAR transformylase), one of several proteins in formyl_transf (Pfam family pfam00551). This enzyme uses formyl tetrahydrofolate as a formyl group donor to produce 5'-phosphoribosyl-N-formylglycinamide. PurT, a different GAR transformylase, uses ATP and formate rather than formyl tetrahydrofolate. Experimental proof includes complementation of E. coli purN mutants by orthologs from vertebrates (where it is a domain of a multifunctional protein), Bacillus subtilis, and Arabidopsis. No archaeal example was detected. In phylogenetic analyses, the member from Saccharomyces cerevisiae shows a long branch length but membership in the family, while the formyltetrahydrofolate deformylases form a closely related outgroup [Purines, pyrimidines, nucleosides, and nucleotides, Purine ribonucleotide biosynthesis]. Length = 190

>gnl|CDD|153139 cd02116, ACT, ACT domains are commonly involved in specifically binding an amino acid or other small ligand leading to regulation of the enzyme

 Score = 35.7 bits (83), Expect = 0.002
 Identities = 9/40 (22%), Positives = 15/40 (37%)

Query: 46 VFHCPDEVGIVAKLSECIASRGGNILAADVFVPEKKNVFY 85
              PD  G++AK+   +A  G NI + +           
Sbjct: 2  TVSGPDRPGLLAKVLSVLAEAGINITSIEQRTSGDGGEAD 41

Members of this CD belong to the superfamily of ACT regulatory domains. Pairs of ACT domains are commonly involved in specifically binding an amino acid or other small ligand leading to regulation of the enzyme. The ACT domain has been detected in a number of diverse proteins; some of these proteins are involved in amino acid and purine biosynthesis, phenylalanine hydroxylation, regulation of bacterial metabolism and transcription, and many remain to be characterized. ACT domain-containing enzymes involved in amino acid and purine synthesis are in many cases allosteric enzymes with complex regulation enforced by the binding of ligands. The ACT domain is commonly involved in the binding of a small regulatory molecule, such as the amino acids L-Ser and L-Phe in the case of D-3-phosphoglycerate dehydrogenase and the bifunctional chorismate mutase-prephenate dehydratase enzyme (P-protein), respectively. Aspartokinases typically consist of two C-terminal ACT domains in a tandem repeat, but the second ACT domain is inserted within the first, resulting in, what is normally the terminal beta strand of ACT2, formed from a region N-terminal of ACT1. ACT domain repeats have been shown to have nonequivalent ligand-binding sites with complex regulatory patterns such as those seen in the bifunctional enzyme, aspartokinase-homoserine dehydrogenase (ThrA). In other enzymes, such as phenylalanine hydroxylases, the ACT domain appears to function as a flexible small module providing allosteric regulation via transmission of conformational changes, these conformational changes are not necessarily initiated by regulatory ligand binding at the ACT domain itself. ACT domains are present either singularly, N- or C-terminal, or in pairs present C-terminal or between two catalytic domains. Unique to cyanobacteria are four ACT domains C-terminal to an aspartokinase domain. A few proteins are composed almost entirely of ACT domain repeats as seen in the four ACT domain protein, the ACR protein, found in higher plants; and the two ACT domain protein, the glycine cleavage system transcriptional repressor (GcvR) protein, found in some bacteria. Also seen are single ACT domain proteins similar to the Streptococcus pneumoniae ACT domain protein (uncharacterized pdb structure 1ZPV) found in both bacteria and archaea. Purportedly, the ACT domain is an evolutionarily mobile ligand binding regulatory module that has been fused to different enzymes at various times. Length = 60

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	306
COG0788	287	PurU Formyltetrahydrofolate hydrolase [Nucleotide	100.0
TIGR00655	280	PurU formyltetrahydrofolate deformylase. This mode	100.0
PRK13010	289	purU formyltetrahydrofolate deformylase; Reviewed	100.0
PLN02828	268	formyltetrahydrofolate deformylase	100.0
PRK13011	286	formyltetrahydrofolate deformylase; Reviewed	100.0
PRK06027	286	purU formyltetrahydrofolate deformylase; Reviewed	100.0
COG0299	200	PurN Folate-dependent phosphoribosylglycinamide fo	100.0
KOG3076	206	consensus 5'-phosphoribosylglycinamide formyltrans	99.96
PLN02331	207	phosphoribosylglycinamide formyltransferase	99.95
TIGR00639	190	PurN phosphoribosylglycinamide formyltransferase,	99.95
PRK05647	200	purN phosphoribosylglycinamide formyltransferase;	99.94
PLN02285	334	methionyl-tRNA formyltransferase	99.92
PF00551	181	Formyl_trans_N: Formyl transferase; InterPro: IPR0	99.9
COG0223	307	Fmt Methionyl-tRNA formyltransferase [Translation,	99.86
PRK06988	312	putative formyltransferase; Provisional	99.82
TIGR00460	313	fmt methionyl-tRNA formyltransferase. The top-scor	99.81
PRK00005	309	fmt methionyl-tRNA formyltransferase; Reviewed	99.8
cd04893	77	ACT_GcvR_1 ACT domains that comprise the Glycine C	99.77
PRK08125	660	bifunctional UDP-glucuronic acid decarboxylase/UDP	99.75
COG3830	90	ACT domain-containing protein [Signal transduction	99.72
cd04875	74	ACT_F4HF-DF N-terminal ACT domain of formyltetrahy	99.69
cd04872	88	ACT_1ZPV ACT domain proteins similar to the yet un	99.65
PRK07579	245	hypothetical protein; Provisional	99.64
PRK00194	90	hypothetical protein; Validated	99.62
cd04870	75	ACT_PSP_1 CT domains found N-terminal of phosphose	99.6
PF13740	76	ACT_6: ACT domain; PDB: 1ZPV_A 3P96_A 1U8S_A.	99.6
cd04869	81	ACT_GcvR_2 ACT domains that comprise the Glycine C	99.57
PRK11589	190	gcvR glycine cleavage system transcriptional repre	99.51
PRK11589	190	gcvR glycine cleavage system transcriptional repre	99.19
cd04871	84	ACT_PSP_2 ACT domains found N-terminal of phosphos	99.08
KOG3082	338	consensus Methionyl-tRNA formyltransferase [Transl	98.92
PF01842	66	ACT: ACT domain; InterPro: IPR002912 The ACT domai	98.77
COG2716	176	GcvR Glycine cleavage system regulatory protein [A	98.65
cd04925	74	ACT_ACR_2 ACT domain-containing protein which is c	98.46
COG2716	176	GcvR Glycine cleavage system regulatory protein [A	98.27
PF13291	80	ACT_4: ACT domain; PDB: 2KO1_B 3IBW_A.	98.2
cd04873	70	ACT_UUR-ACR-like ACT domains of the bacterial sign	98.1
CHL00100	174	ilvH acetohydroxyacid synthase small subunit	98.06
PRK08577	136	hypothetical protein; Provisional	98.06
cd04886	73	ACT_ThrD-II-like C-terminal ACT domain of biodegra	97.97
cd04888	76	ACT_PheB-BS C-terminal ACT domain of a small (~147	97.94
cd04899	70	ACT_ACR-UUR-like_2 C-terminal ACT domains of the b	97.9
cd04928	68	ACT_TyrKc Uncharacterized, N-terminal ACT domain o	97.82
cd04874	72	ACT_Af1403 N-terminal ACT domain of the yet unchar	97.81
PRK03381	774	PII uridylyl-transferase; Provisional	97.81
cd04881	79	ACT_HSDH-Hom ACT_HSDH_Hom CD includes the C-termin	97.8
cd04887	74	ACT_MalLac-Enz ACT_MalLac-Enz CD includes the N-te	97.8
cd04909	69	ACT_PDH-BS C-terminal ACT domain of the monofuncti	97.79
cd04902	73	ACT_3PGDH-xct C-terminal ACT (regulatory) domain o	97.79
cd04878	72	ACT_AHAS N-terminal ACT domain of the Escherichia	97.72
cd04927	76	ACT_ACR-like_2 Second ACT domain, of a novel type	97.7
cd04900	73	ACT_UUR-like_1 ACT domain family, ACT_UUR-like_1,	97.68
cd04876	71	ACT_RelA-SpoT ACT domain found C-terminal of the R	97.65
PRK04435	147	hypothetical protein; Provisional	97.64
cd04879	71	ACT_3PGDH-like ACT_3PGDH-like CD includes the C-te	97.62
KOG2452	881	consensus Formyltetrahydrofolate dehydrogenase [Nu	97.58
COG1707	218	ACT domain-containing protein [General function pr	97.49
cd04903	71	ACT_LSD C-terminal ACT domain of the L-serine dehy	97.47
PRK06737	76	acetolactate synthase 1 regulatory subunit; Valida	97.46
cd04883	72	ACT_AcuB C-terminal ACT domain of the Bacillus sub	97.42
cd04926	72	ACT_ACR_4 C-terminal ACT domain, of a novel type o	97.38
cd04889	56	ACT_PDH-BS-like C-terminal ACT domain of the monof	97.33
cd04877	74	ACT_TyrR N-terminal ACT domain of the TyrR protein	97.33
PRK11152	76	ilvM acetolactate synthase 2 regulatory subunit; P	97.3
PRK11895	161	ilvH acetolactate synthase 3 regulatory subunit; R	97.27
cd02116	60	ACT ACT domains are commonly involved in specifica	97.27
cd04901	69	ACT_3PGDH C-terminal ACT (regulatory) domain of D-	97.26
cd04882	65	ACT_Bt0572_2 C-terminal ACT domain of a novel prot	97.2
cd04897	75	ACT_ACR_3 ACT domain-containing protein which is c	97.2
cd04884	72	ACT_CBS C-terminal ACT domain of the cystathionine	97.16
PRK13562	84	acetolactate synthase 1 regulatory subunit; Provis	97.12
cd04908	66	ACT_Bt0572_1 N-terminal ACT domain of a novel prot	97.11
cd04895	72	ACT_ACR_1 ACT domain-containing protein which is c	97.09
TIGR00119	157	acolac_sm acetolactate synthase, small subunit. ac	97.05
cd04905	80	ACT_CM-PDT C-terminal ACT domain of the bifunction	97.03
cd04880	75	ACT_AAAH-PDT-like ACT domain of the nonheme iron-d	96.97
TIGR01693	850	UTase_glnD [Protein-PII] uridylyltransferase. This	96.91
PRK08178	96	acetolactate synthase 1 regulatory subunit; Review	96.86
TIGR00719	208	sda_beta L-serine dehydratase, iron-sulfur-depende	96.77
cd04896	75	ACT_ACR-like_3 ACT domain-containing protein which	96.56
PF13710	63	ACT_5: ACT domain; PDB: 2FGC_A 2PC6_A 2F1F_B.	96.35
cd04894	69	ACT_ACR-like_1 ACT domain-containing protein which	96.31
PRK05092	931	PII uridylyl-transferase; Provisional	96.19
PRK07334	403	threonine dehydratase; Provisional	96.18
PRK03381	774	PII uridylyl-transferase; Provisional	96.12
PRK10872	743	relA (p)ppGpp synthetase I/GTP pyrophosphokinase;	95.86
PRK11790	409	D-3-phosphoglycerate dehydrogenase; Provisional	95.86
cd04885	68	ACT_ThrD-I Tandem C-terminal ACT domains of threon	95.84
PF13840	65	ACT_7: ACT domain ; PDB: 3S1T_A 1ZHV_A 3AB4_K 3AB2	95.52
TIGR00691	683	spoT_relA (p)ppGpp synthetase, RelA/SpoT family. (	95.44
PRK11092	702	bifunctional (p)ppGpp synthetase II/ guanosine-3',	95.39
cd04913	75	ACT_AKii-LysC-BS-like_1 ACT domains of the lysine-	95.36
COG4492	150	PheB ACT domain-containing protein [General functi	95.32
PRK05092	931	PII uridylyl-transferase; Provisional	94.95
PRK03059	856	PII uridylyl-transferase; Provisional	94.92
TIGR01127	380	ilvA_1Cterm threonine dehydratase, medium form. A	94.74
PRK13581	526	D-3-phosphoglycerate dehydrogenase; Provisional	94.72
PRK05007	884	PII uridylyl-transferase; Provisional	94.62
PRK01759	854	glnD PII uridylyl-transferase; Provisional	94.61
PRK04374	869	PII uridylyl-transferase; Provisional	94.56
cd04904	74	ACT_AAAH ACT domain of the nonheme iron-dependent,	94.51
TIGR01327	525	PGDH D-3-phosphoglycerate dehydrogenase. This mode	94.46
cd04931	90	ACT_PAH ACT domain of the nonheme iron-dependent a	94.43
PRK08198	404	threonine dehydratase; Provisional	94.19
COG4747	142	ACT domain-containing protein [General function pr	94.02
TIGR01693	850	UTase_glnD [Protein-PII] uridylyltransferase. This	93.78
PRK03059	856	PII uridylyl-transferase; Provisional	93.76
PRK05007	884	PII uridylyl-transferase; Provisional	93.55
PRK00275	895	glnD PII uridylyl-transferase; Provisional	93.53
PRK04374	869	PII uridylyl-transferase; Provisional	93.52
cd04892	65	ACT_AK-like_2 ACT domains C-terminal to the cataly	93.47
PRK00275	895	glnD PII uridylyl-transferase; Provisional	93.46
COG0440	163	IlvH Acetolactate synthase, small (regulatory) sub	93.46
PRK08818	370	prephenate dehydrogenase; Provisional	93.1
COG0317	701	SpoT Guanosine polyphosphate pyrophosphohydrolases	92.82
COG2102	223	Predicted ATPases of PP-loop superfamily [General	92.71
PRK06382	406	threonine dehydratase; Provisional	92.6
PRK01759	854	glnD PII uridylyl-transferase; Provisional	92.58
cd04922	66	ACT_AKi-HSDH-ThrA_2 ACT domains of the bifunctiona	92.5
COG2150	167	Predicted regulator of amino acid metabolism, cont	92.48
PRK06545	359	prephenate dehydrogenase; Validated	92.42
KOG2663	309	consensus Acetolactate synthase, small subunit [Am	92.19
cd04906	85	ACT_ThrD-I_1 First of two tandem C-terminal ACT do	91.59
cd04929	74	ACT_TPH ACT domain of the nonheme iron-dependent a	91.55
cd04919	66	ACT_AK-Hom3_2 ACT domains located C-terminal to th	91.41
PRK06349	426	homoserine dehydrogenase; Provisional	91.23
PRK09436	819	thrA bifunctional aspartokinase I/homoserine dehyd	91.22
cd04924	66	ACT_AK-Arch_2 ACT domains of a monofunctional aspa	91.22
PRK08300	302	acetaldehyde dehydrogenase; Validated	91.14
PRK10696	258	tRNA 2-thiocytidine biosynthesis protein TtcA; Pro	90.65
cd04932	75	ACT_AKiii-LysC-EC_1 ACT domains located C-terminal	90.22
cd04937	64	ACT_AKi-DapG-BS_2 ACT domains of the diaminopimela	89.93
PRK11899	279	prephenate dehydratase; Provisional	89.61
PRK08526	403	threonine dehydratase; Provisional	89.42
TIGR01761	343	thiaz-red thiazolinyl imide reductase. This reduct	89.29
cd04912	75	ACT_AKiii-LysC-EC-like_1 ACT domains located C-ter	89.21
cd04918	65	ACT_AK1-AT_2 ACT domains located C-terminal to the	88.99
COG2844	867	GlnD UTP:GlnB (protein PII) uridylyltransferase [P	88.73
cd01994	194	Alpha_ANH_like_IV This is a subfamily of Adenine n	88.62
cd04916	66	ACT_AKiii-YclM-BS_2 ACT domains located C-terminal	88.58
PRK10820	520	DNA-binding transcriptional regulator TyrR; Provis	88.0
COG3978	86	Acetolactate synthase (isozyme II), small (regulat	87.65
cd04930	115	ACT_TH ACT domain of the nonheme iron-dependent ar	87.58
cd04891	61	ACT_AK-LysC-DapG-like_1 ACT domains of the lysine-	87.24
cd04868	60	ACT_AK-like ACT domains C-terminal to the catalyti	86.98
TIGR00289	222	conserved hypothetical protein TIGR00289. Homologo	86.85
PRK09466	810	metL bifunctional aspartate kinase II/homoserine d	86.54
COG1570	440	XseA Exonuclease VII, large subunit [DNA replicati	85.59
COG2844	867	GlnD UTP:GlnB (protein PII) uridylyltransferase [P	85.52
TIGR02079	409	THD1 threonine dehydratase. This model represents	85.37
PRK06291	465	aspartate kinase; Provisional	84.8
TIGR00290	223	MJ0570_dom MJ0570-related uncharacterized domain.	84.32
PRK08639	420	threonine dehydratase; Validated	83.97
PRK10622	386	pheA bifunctional chorismate mutase/prephenate deh	83.79
cd04935	75	ACT_AKiii-DAPDC_1 ACT domains of a bifunctional AK	83.17
cd04921	80	ACT_AKi-HSDH-ThrA-like_1 ACT domains of the bifunc	83.01
PF01902	218	ATP_bind_4: ATP-binding region; InterPro: IPR00276	82.5
cd04936	63	ACT_AKii-LysC-BS-like_2 ACT domains of the lysine-	82.19
PF01171	182	ATP_bind_3: PP-loop family; InterPro: IPR011063 Th	82.1
cd04923	63	ACT_AK-LysC-DapG-like_2 ACT domains of the lysine-	81.71
cd04933	78	ACT_AK1-AT_1 ACT domains located C-terminal to the	81.51
COG2061	170	ACT-domain-containing protein, predicted allosteri	81.24
TIGR03215	285	ac_ald_DH_ac acetaldehyde dehydrogenase (acetylati	80.13

>COG0788 PurU Formyltetrahydrofolate hydrolase [Nucleotide transport and metabolism]

Probab=100.00  E-value=4.1e-61  Score=447.83  Aligned_cols=215  Identities=40%  Similarity=0.633  Sum_probs=200.5

Q ss_pred             CCCCcccEEEEEEcCCccchHHHHHHHHHhcCCeEeEeeeeccCCCCeEEEEEEEEeCCCCCCHHHHHHHHHHHHhhhhc
Q 021895           36 VSPTLTHGIHVFHCPDEVGIVAKLSECIASRGGNILAADVFVPEKKNVFYSRSEFIFDPIKWPREQMDEDFFKLSKMFNA  115 (306)
Q Consensus        36 ~~p~~~k~ILTViGpDRpGIVAaVS~~LAe~G~NIlD~sQ~id~l~G~FfMrmeVdv~~~~~~~eeLreaL~~la~elgl  115 (306)
                      |++++++++||+.|||++||||+||++|+++||||++++||.|..+|+||||++|+....+.+.++|+++|+.++++|+|
T Consensus         1 m~~~~~~~~LtvsCpd~~GiVaais~~l~~~g~NI~~~~qf~D~~~g~FFmR~~f~~~~~~~~~~~l~~~f~~~a~~f~m   80 (287)
T COG0788           1 MSNEPDTFILTVSCPDQPGIVAAISGFLAEHGCNIVDSDQFDDPETGRFFMRVEFEGEGGPLDREALRAAFAPLAEEFGM   80 (287)
T ss_pred             CCCCccceEEEEecCCCCCcHHHHHHHHHHcCCceeecccccccccCeEEEEEEEecCCCcccHHHHHHHHHHHHHhhCc
Confidence            35667899999999999999999999999999999999999988899999999999887768899999999999999996


Q ss_pred             ccceeeecCCCCCceEEEEEeCCcchHHHHHHhhhcCCCCeEEEEEeeCCCCCCChhHHHHHHhCCCCEEEeC-CCCCCh
Q 021895          116 MRSVVRVPDIDPKYKVAVLASKQEHCLVDFLYGWQEGKLPVEITCVISNHDRGPNSHVIRFLERHGIPYHYLC-AKENER  194 (306)
Q Consensus       116 ~~~~~rl~~~~~~~riavl~S~~g~~L~~ll~~~~~g~l~~~I~~Visn~~~~~~~~~~~~A~~~gIp~~~~~-~k~~~~  194 (306)
                         .|++.+.+.++||++|+|+++|||.+||++|+.|+|+++|++|||||++     ....|++||||||+++ .|+++.
T Consensus        81 ---~~~~~~~~~~~ri~i~VSK~~HCL~DLL~r~~~g~L~~eI~~VIsNH~d-----l~~~v~~~~IPfhhip~~~~~k~  152 (287)
T COG0788          81 ---DWRLHDAAQRKRIAILVSKEDHCLGDLLYRWRIGELPAEIVAVISNHDD-----LRPLVERFDIPFHHIPVTKENKA  152 (287)
T ss_pred             ---eeEEeccccCceEEEEEechHHHHHHHHHHHhcCCcCCceEEEEcCCHH-----HHHHHHHcCCCeeeccCCCCcch
Confidence               4788999999999999999999999999999999999999999999975     6889999999999999 666544


Q ss_pred             --HHHHHHHhc--CCcEEEEeccCCCCcCchhhhhhhhhhhhhccCCCccccccccCCHhHHhhcCCCeeEeCCCCCCCC
Q 021895          195 --EEELLELVQ--NTDFLVLARYMQPVPLQKEAYLGYKLLESLSSKGSLTSYFNMILSGKFLRSYGKDVINIHHGLLPSF  270 (306)
Q Consensus       195 --e~e~~~~v~--~~D~vVlA~ym~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~~~l~~~~~~iINiHpsLLP~f  270 (306)
                        |++++++++  ++|+||||+|||                              |||++|+++|+++||||||||||+|
T Consensus       153 e~E~~~~~ll~~~~~DlvVLARYMq------------------------------ILS~d~~~~~~g~iINIHHSFLPaF  202 (287)
T COG0788         153 EAEARLLELLEEYGADLVVLARYMQ------------------------------ILSPDFVERFPGKIINIHHSFLPAF  202 (287)
T ss_pred             HHHHHHHHHHHHhCCCEEeehhhHh------------------------------hCCHHHHHhccCcEEEecccccccC
Confidence              577899997  899999999999                              9999999999999999999999999


Q ss_pred             CCCcHHHHHHHHHhhcCc
Q 021895          271 KGGKPAKQVGCFTFCLGN  288 (306)
Q Consensus       271 ~Ga~p~~~A~~~~~~l~~  288 (306)
                      +||+||+||.+...+|=|
T Consensus       203 ~GA~PY~QA~eRGVKlIG  220 (287)
T COG0788         203 IGANPYHQAYERGVKLIG  220 (287)
T ss_pred             CCCChHHHHHhcCCeEee
Confidence            999999999998887754

>TIGR00655 PurU formyltetrahydrofolate deformylase

Probab=100.00  E-value=1e-54  Score=407.76  Aligned_cols=209  Identities=37%  Similarity=0.653  Sum_probs=188.5

Q ss_pred             EEEEEEcCCccchHHHHHHHHHhcCCeEeEeeeeccCCCCeEEEEEEEEeCCCCCCHHHHHHHHHH-HHhhhhcccceee
Q 021895           43 GIHVFHCPDEVGIVAKLSECIASRGGNILAADVFVPEKKNVFYSRSEFIFDPIKWPREQMDEDFFK-LSKMFNAMRSVVR  121 (306)
Q Consensus        43 ~ILTViGpDRpGIVAaVS~~LAe~G~NIlD~sQ~id~l~G~FfMrmeVdv~~~~~~~eeLreaL~~-la~elgl~~~~~r  121 (306)
                      +|||++||||+||||+||++|+++||||+|++|+++.++|+||||++|+.++...+.++|+++|++ +++++||.   |+
T Consensus         1 ~~itv~g~D~~GIVA~Vt~~La~~g~NI~d~sq~~~~~~~~F~mr~~v~~~~~~~~~~~l~~~l~~~~~~~~~l~---i~   77 (280)
T TIGR00655         1 GILLVSCPDQKGLVAAISTFIAKHGANIISNDQHTDPETGRFFMRVEFQLEGFRLEESSLLAAFKSALAEKFEMT---WE   77 (280)
T ss_pred             CEEEEECCCCCChHHHHHHHHHHCCCCEEeeeEEEcCCCCeEEEEEEEEeCCCCCCHHHHHHHHHHHHHHHhCCE---EE
Confidence            489999999999999999999999999999999998788999999999998655789999999999 99999973   67


Q ss_pred             ecCCCCCceEEEEEeCCcchHHHHHHhhhcCCCCeEEEEEeeCCCCCCChhHHHHHHhCCCCEEEeCCCCCC---hHHHH
Q 021895          122 VPDIDPKYKVAVLASKQEHCLVDFLYGWQEGKLPVEITCVISNHDRGPNSHVIRFLERHGIPYHYLCAKENE---REEEL  198 (306)
Q Consensus       122 l~~~~~~~riavl~S~~g~~L~~ll~~~~~g~l~~~I~~Visn~~~~~~~~~~~~A~~~gIp~~~~~~k~~~---~e~e~  198 (306)
                      +.+.++++|||||+||+||||++|+++++.|+++++|++|||||+   ++  ..+|+++|||+++++.+...   .|+++
T Consensus        78 l~~~~~~~ki~vl~Sg~g~nl~~l~~~~~~g~l~~~i~~visn~~---~~--~~~A~~~gIp~~~~~~~~~~~~~~e~~~  152 (280)
T TIGR00655        78 LILADKLKRVAILVSKEDHCLGDLLWRWYSGELDAEIALVISNHE---DL--RSLVERFGIPFHYIPATKDNRVEHEKRQ  152 (280)
T ss_pred             EecCCCCcEEEEEEcCCChhHHHHHHHHHcCCCCcEEEEEEEcCh---hH--HHHHHHhCCCEEEcCCCCcchhhhHHHH
Confidence            888889999999999999999999999999999999999999994   44  44799999999998853222   24678


Q ss_pred             HHHhc--CCcEEEEeccCCCCcCchhhhhhhhhhhhhccCCCccccccccCCHhHHhhcCCCeeEeCCCCCCCCCCCcHH
Q 021895          199 LELVQ--NTDFLVLARYMQPVPLQKEAYLGYKLLESLSSKGSLTSYFNMILSGKFLRSYGKDVINIHHGLLPSFKGGKPA  276 (306)
Q Consensus       199 ~~~v~--~~D~vVlA~ym~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~~~l~~~~~~iINiHpsLLP~f~Ga~p~  276 (306)
                      +++++  ++|++|||||||                              ||+++|++.|++++|||||||||+|+|++|+
T Consensus       153 ~~~l~~~~~Dlivlagym~------------------------------il~~~~l~~~~~~iINiHpSLLP~f~G~~p~  202 (280)
T TIGR00655       153 LELLKQYQVDLVVLAKYMQ------------------------------ILSPDFVKRYPNKIINIHHSFLPAFIGANPY  202 (280)
T ss_pred             HHHHHHhCCCEEEEeCchh------------------------------hCCHHHHhhccCCEEEecCCcCCCCCCcCHH
Confidence            88886  899999999999                              9999999999999999999999999999999


Q ss_pred             HHHHHHHhhcCce
Q 021895          277 KQVGCFTFCLGNL  289 (306)
Q Consensus       277 ~~A~~~~~~l~~~  289 (306)
                      +||+......-|+
T Consensus       203 ~~ai~~G~k~tG~  215 (280)
T TIGR00655       203 QRAYERGVKIIGA  215 (280)
T ss_pred             HHHHHcCCCeEEE
Confidence            9998776555443

This model describes formyltetrahydrofolate deformylases. The enzyme is a homohexamer. Sequences from a related enzyme formyl tetrahydrofolate-specific enzyme, phosphoribosylglycinamide formyltransferase, serve as an outgroup for phylogenetic analysis. Putative members of this family, scoring below the trusted cutoff, include a sequence from Rhodobacter capsulatus that lacks an otherwise conserved C-terminal region.

>PRK13010 purU formyltetrahydrofolate deformylase; Reviewed

Probab=100.00  E-value=5.4e-54  Score=404.56  Aligned_cols=214  Identities=31%  Similarity=0.556  Sum_probs=190.0

Q ss_pred             CCcccEEEEEEcCCccchHHHHHHHHHhcCCeEeEeeeeccCCCCeEEEEEEEEeC-CCCCCHHHHHHHHHHHHhhhhcc
Q 021895           38 PTLTHGIHVFHCPDEVGIVAKLSECIASRGGNILAADVFVPEKKNVFYSRSEFIFD-PIKWPREQMDEDFFKLSKMFNAM  116 (306)
Q Consensus        38 p~~~k~ILTViGpDRpGIVAaVS~~LAe~G~NIlD~sQ~id~l~G~FfMrmeVdv~-~~~~~~eeLreaL~~la~elgl~  116 (306)
                      |+|.++||||+||||+||||+||++|+++|+||+|++|+.+...|.||||+++... +...+.++|+++|+++++++|+.
T Consensus         5 ~~m~~~iitv~G~Dr~GIVA~Vs~~Lae~g~NI~disq~~d~~~~~ffm~i~~~~~~~~~~~~~~l~~~l~~l~~~l~l~   84 (289)
T PRK13010          5 PRSPSYVLTLACPSAPGIVAAVSGFLAEKGCYIVELTQFDDDESGRFFMRVSFHAQSAEAASVDTFRQEFQPVAEKFDMQ   84 (289)
T ss_pred             ccccCEEEEEECCCCCCcHHHHHHHHHHCCCCEEecccccccccCcEEEEEEEEcCCCCCCCHHHHHHHHHHHHHHhCCe
Confidence            55678999999999999999999999999999999999877778999999998833 23578999999999999999974


Q ss_pred             cceeeecCCCCCceEEEEEeCCcchHHHHHHhhhcCCCCeEEEEEeeCCCCCCChhHHHHHHhCCCCEEEeCCCCC---C
Q 021895          117 RSVVRVPDIDPKYKVAVLASKQEHCLVDFLYGWQEGKLPVEITCVISNHDRGPNSHVIRFLERHGIPYHYLCAKEN---E  193 (306)
Q Consensus       117 ~~~~rl~~~~~~~riavl~S~~g~~L~~ll~~~~~g~l~~~I~~Visn~~~~~~~~~~~~A~~~gIp~~~~~~k~~---~  193 (306)
                         |++...++++|||||+||+||||++|++++++|+++++|++||||++   +  +.++|+++|||+++++.+..   +
T Consensus        85 ---~~i~~~~~~~kiavl~Sg~g~nl~al~~~~~~~~l~~~i~~visn~~---~--~~~~A~~~gIp~~~~~~~~~~~~~  156 (289)
T PRK13010         85 ---WAIHPDGQRPKVVIMVSKFDHCLNDLLYRWRMGELDMDIVGIISNHP---D--LQPLAVQHDIPFHHLPVTPDTKAQ  156 (289)
T ss_pred             ---EEEecCCCCeEEEEEEeCCCccHHHHHHHHHCCCCCcEEEEEEECCh---h--HHHHHHHcCCCEEEeCCCcccccc
Confidence               56777788899999999999999999999999999999999999994   3  46999999999999885432   2


Q ss_pred             hHHHHHHHhc--CCcEEEEeccCCCCcCchhhhhhhhhhhhhccCCCccccccccCCHhHHhhcCCCeeEeCCCCCCCCC
Q 021895          194 REEELLELVQ--NTDFLVLARYMQPVPLQKEAYLGYKLLESLSSKGSLTSYFNMILSGKFLRSYGKDVINIHHGLLPSFK  271 (306)
Q Consensus       194 ~e~e~~~~v~--~~D~vVlA~ym~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~~~l~~~~~~iINiHpsLLP~f~  271 (306)
                      .|++++++++  ++|++|||||||                              ||+++|++.|++++|||||||||+|+
T Consensus       157 ~~~~~~~~l~~~~~Dlivlagym~------------------------------il~~~~l~~~~~~iiNiHpSlLP~f~  206 (289)
T PRK13010        157 QEAQILDLIETSGAELVVLARYMQ------------------------------VLSDDLSRKLSGRAINIHHSFLPGFK  206 (289)
T ss_pred             hHHHHHHHHHHhCCCEEEEehhhh------------------------------hCCHHHHhhccCCceeeCcccCCCCC
Confidence            3467888887  899999999999                              99999999999999999999999999


Q ss_pred             CCcHHHHHHHHHhhcCce
Q 021895          272 GGKPAKQVGCFTFCLGNL  289 (306)
Q Consensus       272 Ga~p~~~A~~~~~~l~~~  289 (306)
                      |++|++||+....+.-|+
T Consensus       207 G~~~~~~ai~~G~k~tG~  224 (289)
T PRK13010        207 GARPYHQAHARGVKLIGA  224 (289)
T ss_pred             CCCHHHHHHHcCCCeEEE
Confidence            999999998776655443

>PLN02828 formyltetrahydrofolate deformylase

Probab=100.00  E-value=2.2e-51  Score=383.96  Aligned_cols=201  Identities=75%  Similarity=1.271  Sum_probs=184.5

Q ss_pred             HHHHHHhcCCeEeEeeeeccCCCCeEEEEEEEEeCCCCCCHHHHHHHHHHHHhhhhcccceeeecCCCCCceEEEEEeCC
Q 021895           59 LSECIASRGGNILAADVFVPEKKNVFYSRSEFIFDPIKWPREQMDEDFFKLSKMFNAMRSVVRVPDIDPKYKVAVLASKQ  138 (306)
Q Consensus        59 VS~~LAe~G~NIlD~sQ~id~l~G~FfMrmeVdv~~~~~~~eeLreaL~~la~elgl~~~~~rl~~~~~~~riavl~S~~  138 (306)
                      ||++|+++||||++++||+|..+|+||||++++.++...+.++|+++|++++++|+|.|+.|++.+.++++|||||+||+
T Consensus         1 ~~~~~~~~~~ni~~~~~~~d~~~~~ff~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~riavlvSg~   80 (268)
T PLN02828          1 LSDCIASRGGNILGVDVFVPENKNVFYSRSEFIFDPVKWPRAQMDEDFQEISKHFKALKSVVRVPGLDPKYKIAVLASKQ   80 (268)
T ss_pred             CcHHHHhCCCCEeEcccccCCCCCeeEEEEEEEeCCCCCCHHHHHHHHHHHHHhcCCcceEEEEccCCCCcEEEEEEcCC
Confidence            58899999999999999999999999999999977444578999999999999999767689999999999999999999


Q ss_pred             cchHHHHHHhhhcCCCCeEEEEEeeCCCCCCChhHHHHHHhCCCCEEEeCC-CCCChHHHHHHHhcCCcEEEEeccCCCC
Q 021895          139 EHCLVDFLYGWQEGKLPVEITCVISNHDRGPNSHVIRFLERHGIPYHYLCA-KENEREEELLELVQNTDFLVLARYMQPV  217 (306)
Q Consensus       139 g~~L~~ll~~~~~g~l~~~I~~Visn~~~~~~~~~~~~A~~~gIp~~~~~~-k~~~~e~e~~~~v~~~D~vVlA~ym~~~  217 (306)
                      ||||++|++++++|+|+++|++|||||+++++++++++|+++|||+++++. +.+.+|++++++++++|++|||||||  
T Consensus        81 g~nl~~ll~~~~~g~l~~eI~~ViSn~~~~~~a~~~~~A~~~gIP~~~~~~~~~~~~e~~~~~~l~~~DliVLAgym~--  158 (268)
T PLN02828         81 DHCLIDLLHRWQDGRLPVDITCVISNHERGPNTHVMRFLERHGIPYHYLPTTKENKREDEILELVKGTDFLVLARYMQ--  158 (268)
T ss_pred             ChhHHHHHHhhhcCCCCceEEEEEeCCCCCCCchHHHHHHHcCCCEEEeCCCCCCCHHHHHHHHHhcCCEEEEeeehH--
Confidence            999999999999999999999999999877778999999999999998884 34556778888888999999999999  


Q ss_pred             cCchhhhhhhhhhhhhccCCCccccccccCCHhHHhhcCCCeeEeCCCCCCCCCCCcHHHHHHHHHhhcCce
Q 021895          218 PLQKEAYLGYKLLESLSSKGSLTSYFNMILSGKFLRSYGKDVINIHHGLLPSFKGGKPAKQVGCFTFCLGNL  289 (306)
Q Consensus       218 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~~~l~~~~~~iINiHpsLLP~f~Ga~p~~~A~~~~~~l~~~  289 (306)
                                                  ||+++|++.|+++||||||||||+|+|++||+||+....+.-|+
T Consensus       159 ----------------------------IL~~~~l~~~~~riINIHpSlLP~f~Ga~p~~~Ai~~Gvk~tG~  202 (268)
T PLN02828        159 ----------------------------ILSGNFLKGYGKDIINIHHGLLPSFKGGNPSKQAFDAGVKLIGA  202 (268)
T ss_pred             ----------------------------hCCHHHHhhccCCEEEecCccCCCCCCCcHHHHHHHcCCCeEEE
Confidence                                        99999999999999999999999999999999998876665443

>PRK13011 formyltetrahydrofolate deformylase; Reviewed

Probab=100.00  E-value=3.7e-50  Score=377.74  Aligned_cols=212  Identities=33%  Similarity=0.553  Sum_probs=188.3

Q ss_pred             CCCCcccEEEEEEcCCccchHHHHHHHHHhcCCeEeEeeeeccCCCCeEEEEEEEEeCCCCCCHHHHHHHHHHHHhhhhc
Q 021895           36 VSPTLTHGIHVFHCPDEVGIVAKLSECIASRGGNILAADVFVPEKKNVFYSRSEFIFDPIKWPREQMDEDFFKLSKMFNA  115 (306)
Q Consensus        36 ~~p~~~k~ILTViGpDRpGIVAaVS~~LAe~G~NIlD~sQ~id~l~G~FfMrmeVdv~~~~~~~eeLreaL~~la~elgl  115 (306)
                      |+.-|.++++||+|+|||||||+||++|+++|+||+|++|+++.+++.|+|+++++.|+ ..+.++|+++|+++++++++
T Consensus         1 ~~~~m~~~vitv~G~DrpGIVa~VT~~La~~~vNI~dls~~~~~~~~~F~m~~~~~~p~-~~~~~~L~~~L~~l~~~l~l   79 (286)
T PRK13011          1 MSRRPDTFVLTLSCPSAAGIVAAVTGFLAEHGCYITELHSFDDRLSGRFFMRVEFHSEE-GLDEDALRAGFAPIAARFGM   79 (286)
T ss_pred             CCCCCceEEEEEEeCCCCCHHHHHHHHHHhCCCCEEEeeeeecCCCCeEEEEEEEecCC-CCCHHHHHHHHHHHHHHhCc
Confidence            35567789999999999999999999999999999999999777899999999999885 56899999999999999997


Q ss_pred             ccceeeecCCCCCceEEEEEeCCcchHHHHHHhhhcCCCCeEEEEEeeCCCCCCChhHHHHHHhCCCCEEEeCCCCCC--
Q 021895          116 MRSVVRVPDIDPKYKVAVLASKQEHCLVDFLYGWQEGKLPVEITCVISNHDRGPNSHVIRFLERHGIPYHYLCAKENE--  193 (306)
Q Consensus       116 ~~~~~rl~~~~~~~riavl~S~~g~~L~~ll~~~~~g~l~~~I~~Visn~~~~~~~~~~~~A~~~gIp~~~~~~k~~~--  193 (306)
                      .   +++...++++|||||+||+|+||++|+++++.|+++++|++||||++   ++  ..+|+++|||+++++.+...  
T Consensus        80 ~---i~i~~~~~~~ri~vl~Sg~g~nl~al~~~~~~~~~~~~i~~visn~~---~~--~~lA~~~gIp~~~~~~~~~~~~  151 (286)
T PRK13011         80 Q---WELHDPAARPKVLIMVSKFDHCLNDLLYRWRIGELPMDIVGVVSNHP---DL--EPLAAWHGIPFHHFPITPDTKP  151 (286)
T ss_pred             E---EEEeecccCceEEEEEcCCcccHHHHHHHHHcCCCCcEEEEEEECCc---cH--HHHHHHhCCCEEEeCCCcCchh
Confidence            4   55677778899999999999999999999999999999999999984   33  45599999999998743322  


Q ss_pred             -hHHHHHHHhc--CCcEEEEeccCCCCcCchhhhhhhhhhhhhccCCCccccccccCCHhHHhhcCCCeeEeCCCCCCCC
Q 021895          194 -REEELLELVQ--NTDFLVLARYMQPVPLQKEAYLGYKLLESLSSKGSLTSYFNMILSGKFLRSYGKDVINIHHGLLPSF  270 (306)
Q Consensus       194 -~e~e~~~~v~--~~D~vVlA~ym~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~~~l~~~~~~iINiHpsLLP~f  270 (306)
                       .|+++++.++  ++|++|+||||+                              ||+++|++.|++++|||||||||+|
T Consensus       152 ~~~~~~~~~l~~~~~Dlivlagy~~------------------------------il~~~~l~~~~~~iiNiHpSLLP~~  201 (286)
T PRK13011        152 QQEAQVLDVVEESGAELVVLARYMQ------------------------------VLSPELCRKLAGRAINIHHSFLPGF  201 (286)
T ss_pred             hhHHHHHHHHHHhCcCEEEEeChhh------------------------------hCCHHHHhhccCCeEEeccccCCCC
Confidence             2456778776  899999999999                              9999999999999999999999999


Q ss_pred             CCCcHHHHHHHHHhhc
Q 021895          271 KGGKPAKQVGCFTFCL  286 (306)
Q Consensus       271 ~Ga~p~~~A~~~~~~l  286 (306)
                      +|++|++||+......
T Consensus       202 rG~~~~~~ai~~G~~~  217 (286)
T PRK13011        202 KGAKPYHQAYERGVKL  217 (286)
T ss_pred             CCCcHHHHHHHCCCCe
Confidence            9999999997665443

>PRK06027 purU formyltetrahydrofolate deformylase; Reviewed

Probab=100.00  E-value=4.5e-50  Score=376.73  Aligned_cols=211  Identities=42%  Similarity=0.699  Sum_probs=187.7

Q ss_pred             cccEEEEEEcCCccchHHHHHHHHHhcCCeEeEeeeeccCCCCeEEEEEEEEeCCCCCCHHHHHHHHHHHHhhhhcccce
Q 021895           40 LTHGIHVFHCPDEVGIVAKLSECIASRGGNILAADVFVPEKKNVFYSRSEFIFDPIKWPREQMDEDFFKLSKMFNAMRSV  119 (306)
Q Consensus        40 ~~k~ILTViGpDRpGIVAaVS~~LAe~G~NIlD~sQ~id~l~G~FfMrmeVdv~~~~~~~eeLreaL~~la~elgl~~~~  119 (306)
                      ++++++|++|+||||||++||++|+++||||+|++|+....+|.|+|++++++++.+.+.++|+++|+++++++++.   
T Consensus         4 ~~~~vitv~G~DrpGIVa~Vt~~La~~g~NI~d~s~~~~~~~g~F~m~i~v~~~~~~~~~~~L~~~L~~l~~~l~l~---   80 (286)
T PRK06027          4 MQRYVLTLSCPDRPGIVAAVSNFLYEHGGNIVDADQFVDPETGRFFMRVEFEGDGLIFNLETLRADFAALAEEFEMD---   80 (286)
T ss_pred             CceEEEEEECCCCCcHHHHHHHHHHHCCCCEEEceeEEcCCCCeEEEEEEEEeCCCCCCHHHHHHHHHHHHHHhCCE---
Confidence            46799999999999999999999999999999999998556889999999999444567999999999999999974   


Q ss_pred             eeecCCCCCceEEEEEeCCcchHHHHHHhhhcCCCCeEEEEEeeCCCCCCChhHHHHHHhCCCCEEEeCCCCC---ChHH
Q 021895          120 VRVPDIDPKYKVAVLASKQEHCLVDFLYGWQEGKLPVEITCVISNHDRGPNSHVIRFLERHGIPYHYLCAKEN---EREE  196 (306)
Q Consensus       120 ~rl~~~~~~~riavl~S~~g~~L~~ll~~~~~g~l~~~I~~Visn~~~~~~~~~~~~A~~~gIp~~~~~~k~~---~~e~  196 (306)
                      +.+.+..+++|||||+||+|+||++|+++++.|+++++|++||||++   +  +..+|+++|||+++++.+..   +.|+
T Consensus        81 i~l~~~~~~~ri~vl~Sg~gsnl~al~~~~~~~~~~~~i~~visn~~---~--~~~lA~~~gIp~~~~~~~~~~~~~~~~  155 (286)
T PRK06027         81 WRLLDSAERKRVVILVSKEDHCLGDLLWRWRSGELPVEIAAVISNHD---D--LRSLVERFGIPFHHVPVTKETKAEAEA  155 (286)
T ss_pred             EEEcccccCcEEEEEEcCCCCCHHHHHHHHHcCCCCcEEEEEEEcCh---h--HHHHHHHhCCCEEEeccCccccchhHH
Confidence            56788889999999999999999999999999999999999999994   3  34569999999999885422   2356


Q ss_pred             HHHHHhc--CCcEEEEeccCCCCcCchhhhhhhhhhhhhccCCCccccccccCCHhHHhhcCCCeeEeCCCCCCCCCCCc
Q 021895          197 ELLELVQ--NTDFLVLARYMQPVPLQKEAYLGYKLLESLSSKGSLTSYFNMILSGKFLRSYGKDVINIHHGLLPSFKGGK  274 (306)
Q Consensus       197 e~~~~v~--~~D~vVlA~ym~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~~~l~~~~~~iINiHpsLLP~f~Ga~  274 (306)
                      ++.++++  ++|++||||||+                              ||+++|++.|++++|||||||||+|+|++
T Consensus       156 ~~~~~l~~~~~Dlivlagy~~------------------------------il~~~~l~~~~~~iiNiHpSLLP~yrG~~  205 (286)
T PRK06027        156 RLLELIDEYQPDLVVLARYMQ------------------------------ILSPDFVARFPGRIINIHHSFLPAFKGAK  205 (286)
T ss_pred             HHHHHHHHhCCCEEEEecchh------------------------------hcCHHHHhhccCCceecCcccCCCCCCCC
Confidence            7788887  899999999999                              99999999999999999999999999999


Q ss_pred             HHHHHHHHHhhcCc
Q 021895          275 PAKQVGCFTFCLGN  288 (306)
Q Consensus       275 p~~~A~~~~~~l~~  288 (306)
                      |++||+......-|
T Consensus       206 ~~~~ai~~G~~~tG  219 (286)
T PRK06027        206 PYHQAYERGVKLIG  219 (286)
T ss_pred             HHHHHHHCCCCeEE
Confidence            99999776555433

>COG0299 PurN Folate-dependent phosphoribosylglycinamide formyltransferase PurN [Nucleotide transport and metabolism]

Probab=100.00  E-value=3.3e-33  Score=251.53  Aligned_cols=126  Identities=33%  Similarity=0.456  Sum_probs=116.1

Q ss_pred             ceEEEEEeCCcchHHHHHHhhhcCCCCeEEEEEeeCCCCCCChhHHHHHHhCCCCEEEeCCCCC-C---hHHHHHHHhc-
Q 021895          129 YKVAVLASKQEHCLVDFLYGWQEGKLPVEITCVISNHDRGPNSHVIRFLERHGIPYHYLCAKEN-E---REEELLELVQ-  203 (306)
Q Consensus       129 ~riavl~S~~g~~L~~ll~~~~~g~l~~~I~~Visn~~~~~~~~~~~~A~~~gIp~~~~~~k~~-~---~e~e~~~~v~-  203 (306)
                      +||+||+||+|+|||+|+++++.|+++++|++||||+   ++++++++|+++|||+.++..|+. .   .|+++.+.+. 
T Consensus         1 ~ki~VlaSG~GSNlqaiida~~~~~~~a~i~~Visd~---~~A~~lerA~~~gIpt~~~~~k~~~~r~~~d~~l~~~l~~   77 (200)
T COG0299           1 KKIAVLASGNGSNLQAIIDAIKGGKLDAEIVAVISDK---ADAYALERAAKAGIPTVVLDRKEFPSREAFDRALVEALDE   77 (200)
T ss_pred             CeEEEEEeCCcccHHHHHHHHhcCCCCcEEEEEEeCC---CCCHHHHHHHHcCCCEEEeccccCCCHHHHHHHHHHHHHh
Confidence            4899999999999999999999999999999999999   789999999999999999987653 2   3567888886 


Q ss_pred             -CCcEEEEeccCCCCcCchhhhhhhhhhhhhccCCCccccccccCCHhHHhhcCCCeeEeCCCCCCCCCCCcHHHHHHHH
Q 021895          204 -NTDFLVLARYMQPVPLQKEAYLGYKLLESLSSKGSLTSYFNMILSGKFLRSYGKDVINIHHGLLPSFKGGKPAKQVGCF  282 (306)
Q Consensus       204 -~~D~vVlA~ym~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~~~l~~~~~~iINiHpsLLP~f~Ga~p~~~A~~~  282 (306)
                       ++|+|||||||+                              ||++.|++.|+++||||||||||+|+|.+.++||++.
T Consensus        78 ~~~dlvvLAGyMr------------------------------IL~~~fl~~~~grIlNIHPSLLP~f~G~h~~~~A~~a  127 (200)
T COG0299          78 YGPDLVVLAGYMR------------------------------ILGPEFLSRFEGRILNIHPSLLPAFPGLHAHEQALEA  127 (200)
T ss_pred             cCCCEEEEcchHH------------------------------HcCHHHHHHhhcceEecCcccccCCCCchHHHHHHHc
Confidence             899999999999                              9999999999999999999999999999999999888


Q ss_pred             HhhcC
Q 021895          283 TFCLG  287 (306)
Q Consensus       283 ~~~l~  287 (306)
                      ..+.-
T Consensus       128 G~k~s  132 (200)
T COG0299         128 GVKVS  132 (200)
T ss_pred             CCCcc
Confidence            77643

>KOG3076 consensus 5'-phosphoribosylglycinamide formyltransferase [Carbohydrate transport and metabolism]

Probab=99.96  E-value=5.9e-30  Score=229.50  Aligned_cols=129  Identities=36%  Similarity=0.469  Sum_probs=116.2

Q ss_pred             CCceEEEEEeCCcchHHHHHHhhhcCCC--CeEEEEEeeCCCCCCChhHHHHHHhCCCCEEEeCCCC-CCh---HHHHHH
Q 021895          127 PKYKVAVLASKQEHCLVDFLYGWQEGKL--PVEITCVISNHDRGPNSHVIRFLERHGIPYHYLCAKE-NER---EEELLE  200 (306)
Q Consensus       127 ~~~riavl~S~~g~~L~~ll~~~~~g~l--~~~I~~Visn~~~~~~~~~~~~A~~~gIp~~~~~~k~-~~~---e~e~~~  200 (306)
                      ++.|++||+||.|+|||+|+++.++|.+  .++|+.||||+   .+++++++|++.|||+.+++.+. ..|   +.|+.+
T Consensus         5 ~r~rvavliSGtGsNlqaLid~~r~~~l~~~a~VvlviSnk---~~~~GL~rA~~~gIPt~vip~k~~a~R~~~d~eL~~   81 (206)
T KOG3076|consen    5 RRARVAVLISGTGSNLQALIDATRDGSLGPNADVVLVISNK---KGVYGLERAADAGIPTLVIPHKRFASREKYDNELAE   81 (206)
T ss_pred             cceeEEEEEecCchhHHHHHHhhcCCCcCCCceEEEEEecc---ccchhhhHHHHCCCCEEEeccccccccccCcHHHHH
Confidence            6789999999999999999999999999  69999999999   67999999999999999999642 233   356776


Q ss_pred             Hhc--CCcEEEEeccCCCCcCchhhhhhhhhhhhhccCCCccccccccCCHhHHhhcCCCeeEeCCCCCCCCCCCcHHHH
Q 021895          201 LVQ--NTDFLVLARYMQPVPLQKEAYLGYKLLESLSSKGSLTSYFNMILSGKFLRSYGKDVINIHHGLLPSFKGGKPAKQ  278 (306)
Q Consensus       201 ~v~--~~D~vVlA~ym~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~~~l~~~~~~iINiHpsLLP~f~Ga~p~~~  278 (306)
                      .+.  .+|+||||||||                              |||++|++.|+++||||||||||+|+|.++++|
T Consensus        82 ~l~e~~~d~v~lAG~M~------------------------------iLs~~fl~~~~~~iiNIHPaLlpaFkG~~a~k~  131 (206)
T KOG3076|consen   82 VLLELGTDLVCLAGYMR------------------------------ILSGEFLSQLPKRIINIHPALLPAFKGLHAIKQ  131 (206)
T ss_pred             HHHHhCCCEEEehhhHH------------------------------HcCHHHHhhcccceEecccccccccCCchHHHH
Confidence            665  999999999999                              999999999999999999999999999999999


Q ss_pred             HHHHHhhcCc
Q 021895          279 VGCFTFCLGN  288 (306)
Q Consensus       279 A~~~~~~l~~  288 (306)
                      |+++...+-|
T Consensus       132 Aleagv~~~G  141 (206)
T KOG3076|consen  132 ALEAGVKLSG  141 (206)
T ss_pred             HHHhcccccc
Confidence            9988765544

>PLN02331 phosphoribosylglycinamide formyltransferase

Probab=99.95  E-value=5e-28  Score=218.99  Aligned_cols=117  Identities=24%  Similarity=0.483  Sum_probs=105.7

Q ss_pred             eEEEEEeCCcchHHHHHHhhhcCCCCeEEEEEeeCCCCCCChhHHHHHHhCCCCEEEeCCCC----CChHHHHHHHhc--
Q 021895          130 KVAVLASKQEHCLVDFLYGWQEGKLPVEITCVISNHDRGPNSHVIRFLERHGIPYHYLCAKE----NEREEELLELVQ--  203 (306)
Q Consensus       130 riavl~S~~g~~L~~ll~~~~~g~l~~~I~~Visn~~~~~~~~~~~~A~~~gIp~~~~~~k~----~~~e~e~~~~v~--  203 (306)
                      ||+||+||+|+||++|++++++|+++++|++||||+   +++.++++|+++|||+++++.+.    ...++++.+.++  
T Consensus         1 ki~vl~Sg~Gsn~~al~~~~~~~~l~~~i~~visn~---~~~~~~~~A~~~gIp~~~~~~~~~~~~~~~~~~~~~~l~~~   77 (207)
T PLN02331          1 KLAVFVSGGGSNFRAIHDACLDGRVNGDVVVVVTNK---PGCGGAEYARENGIPVLVYPKTKGEPDGLSPDELVDALRGA   77 (207)
T ss_pred             CEEEEEeCCChhHHHHHHHHHcCCCCeEEEEEEEeC---CCChHHHHHHHhCCCEEEeccccCCCcccchHHHHHHHHhc
Confidence            799999999999999999999999999999999998   67899999999999999987542    123567878776  


Q ss_pred             CCcEEEEeccCCCCcCchhhhhhhhhhhhhccCCCccccccccCCHhHHhhcCCCeeEeCCCCCCCCCCC----cHHHHH
Q 021895          204 NTDFLVLARYMQPVPLQKEAYLGYKLLESLSSKGSLTSYFNMILSGKFLRSYGKDVINIHHGLLPSFKGG----KPAKQV  279 (306)
Q Consensus       204 ~~D~vVlA~ym~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~~~l~~~~~~iINiHpsLLP~f~Ga----~p~~~A  279 (306)
                      ++|++|+||||+                              |++++|++.|+.++||+||||||+|||+    .|++|+
T Consensus        78 ~~Dliv~agy~~------------------------------il~~~~l~~~~~~~iNiHpSLLP~yrG~g~~~~~v~~a  127 (207)
T PLN02331         78 GVDFVLLAGYLK------------------------------LIPVELVRAYPRSILNIHPALLPAFGGKGYYGIKVHKA  127 (207)
T ss_pred             CCCEEEEeCcch------------------------------hCCHHHHhhCCCCEEEEeCccccCCCCCCcccchHHHH
Confidence            899999999999                              9999999999999999999999999995    577766

>TIGR00639 PurN phosphoribosylglycinamide formyltransferase, formyltetrahydrofolate-dependent

Probab=99.95  E-value=1.1e-27  Score=213.71  Aligned_cols=122  Identities=30%  Similarity=0.501  Sum_probs=110.0

Q ss_pred             ceEEEEEeCCcchHHHHHHhhhcCCCCeEEEEEeeCCCCCCChhHHHHHHhCCCCEEEeCCCC----CChHHHHHHHhc-
Q 021895          129 YKVAVLASKQEHCLVDFLYGWQEGKLPVEITCVISNHDRGPNSHVIRFLERHGIPYHYLCAKE----NEREEELLELVQ-  203 (306)
Q Consensus       129 ~riavl~S~~g~~L~~ll~~~~~g~l~~~I~~Visn~~~~~~~~~~~~A~~~gIp~~~~~~k~----~~~e~e~~~~v~-  203 (306)
                      +|||||+||+|+|+++++++++++.++++|++||+|+   +++.+.++|+++|||+++++.+.    +..|+++.+.++ 
T Consensus         1 ~riail~sg~gs~~~~ll~~~~~~~l~~~I~~vi~~~---~~~~~~~~A~~~gip~~~~~~~~~~~~~~~~~~~~~~l~~   77 (190)
T TIGR00639         1 KRIVVLISGNGSNLQAIIDACKEGKIPASVVLVISNK---PDAYGLERAAQAGIPTFVLSLKDFPSREAFDQAIIEELRA   77 (190)
T ss_pred             CeEEEEEcCCChhHHHHHHHHHcCCCCceEEEEEECC---ccchHHHHHHHcCCCEEEECccccCchhhhhHHHHHHHHh
Confidence            5899999999999999999999999999999999998   46789999999999999876432    123567888886 


Q ss_pred             -CCcEEEEeccCCCCcCchhhhhhhhhhhhhccCCCccccccccCCHhHHhhcCCCeeEeCCCCCCCCCCCcHHHHHHHH
Q 021895          204 -NTDFLVLARYMQPVPLQKEAYLGYKLLESLSSKGSLTSYFNMILSGKFLRSYGKDVINIHHGLLPSFKGGKPAKQVGCF  282 (306)
Q Consensus       204 -~~D~vVlA~ym~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~~~l~~~~~~iINiHpsLLP~f~Ga~p~~~A~~~  282 (306)
                       ++|++|++|||+                              |+++++++.|+.++||+||||||.|||.+|++||+..
T Consensus        78 ~~~D~iv~~~~~~------------------------------il~~~~l~~~~~~~iNiHpslLP~yrG~~p~~~ai~~  127 (190)
T TIGR00639        78 HEVDLVVLAGFMR------------------------------ILGPTFLSRFAGRILNIHPSLLPAFPGLHAVEQALEA  127 (190)
T ss_pred             cCCCEEEEeCcch------------------------------hCCHHHHhhccCCEEEEeCCcccCCCCccHHHHHHHc
Confidence             899999999999                              9999999999999999999999999999999999654


Q ss_pred             H
Q 021895          283 T  283 (306)
Q Consensus       283 ~  283 (306)
                      .
T Consensus       128 g  128 (190)
T TIGR00639       128 G  128 (190)
T ss_pred             C
Confidence            3

In phylogenetic analyses, the member from Saccharomyces cerevisiae shows a long branch length but membership in the family, while the formyltetrahydrofolate deformylases form a closely related outgroup.

>PRK05647 purN phosphoribosylglycinamide formyltransferase; Reviewed

Probab=99.94  E-value=2.3e-26  Score=206.53  Aligned_cols=125  Identities=34%  Similarity=0.461  Sum_probs=110.6

Q ss_pred             CceEEEEEeCCcchHHHHHHhhhcCCCCeEEEEEeeCCCCCCChhHHHHHHhCCCCEEEeCCC-CCC---hHHHHHHHhc
Q 021895          128 KYKVAVLASKQEHCLVDFLYGWQEGKLPVEITCVISNHDRGPNSHVIRFLERHGIPYHYLCAK-ENE---REEELLELVQ  203 (306)
Q Consensus       128 ~~riavl~S~~g~~L~~ll~~~~~g~l~~~I~~Visn~~~~~~~~~~~~A~~~gIp~~~~~~k-~~~---~e~e~~~~v~  203 (306)
                      ++|||||+||+|+|+++++++++++.++++|++||||+   +++.+.++|+++|||+++++.+ ...   .++++.+.++
T Consensus         1 m~ki~vl~sg~gs~~~~ll~~~~~~~~~~~I~~vvs~~---~~~~~~~~a~~~gIp~~~~~~~~~~~~~~~~~~~~~~l~   77 (200)
T PRK05647          1 MKRIVVLASGNGSNLQAIIDACAAGQLPAEIVAVISDR---PDAYGLERAEAAGIPTFVLDHKDFPSREAFDAALVEALD   77 (200)
T ss_pred             CceEEEEEcCCChhHHHHHHHHHcCCCCcEEEEEEecC---ccchHHHHHHHcCCCEEEECccccCchhHhHHHHHHHHH
Confidence            37999999999999999999999999999999999998   4678999999999999997732 221   2457777775


Q ss_pred             --CCcEEEEeccCCCCcCchhhhhhhhhhhhhccCCCccccccccCCHhHHhhcCCCeeEeCCCCCCCCCCCcHHHHHHH
Q 021895          204 --NTDFLVLARYMQPVPLQKEAYLGYKLLESLSSKGSLTSYFNMILSGKFLRSYGKDVINIHHGLLPSFKGGKPAKQVGC  281 (306)
Q Consensus       204 --~~D~vVlA~ym~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~~~l~~~~~~iINiHpsLLP~f~Ga~p~~~A~~  281 (306)
                        ++|++|++|||+                              |+++++++.|+.++||+||||||.|||++|++||+.
T Consensus        78 ~~~~D~iv~~~~~~------------------------------ii~~~~l~~~~~~~iNiHpslLP~yrG~~p~~~ai~  127 (200)
T PRK05647         78 AYQPDLVVLAGFMR------------------------------ILGPTFVSAYEGRIINIHPSLLPSFPGLHTHEQALE  127 (200)
T ss_pred             HhCcCEEEhHHhhh------------------------------hCCHHHHhhccCCEEEEeCccccCCCCccHHHHHHH
Confidence              899999999999                              999999999999999999999999999999999976


Q ss_pred             HHhh
Q 021895          282 FTFC  285 (306)
Q Consensus       282 ~~~~  285 (306)
                      ..-.
T Consensus       128 ~g~~  131 (200)
T PRK05647        128 AGVK  131 (200)
T ss_pred             cCCC
Confidence            5443

>PLN02285 methionyl-tRNA formyltransferase

Probab=99.92  E-value=4.3e-25  Score=211.65  Aligned_cols=134  Identities=23%  Similarity=0.318  Sum_probs=112.5

Q ss_pred             CCCCceEEEEEeCC--cchHHHHHHhhhcCCCCeEEEEEeeCCCCCC-------ChhHHHHHHhCCCCEEEeCCCCCChH
Q 021895          125 IDPKYKVAVLASKQ--EHCLVDFLYGWQEGKLPVEITCVISNHDRGP-------NSHVIRFLERHGIPYHYLCAKENERE  195 (306)
Q Consensus       125 ~~~~~riavl~S~~--g~~L~~ll~~~~~g~l~~~I~~Visn~~~~~-------~~~~~~~A~~~gIp~~~~~~k~~~~e  195 (306)
                      .++++||+||+|++  .+||++|+++++.|..+++|++|||++|+..       .+++.++|+++|||++++......++
T Consensus         3 ~~~~~kI~f~Gt~~fa~~~L~~L~~~~~~~~~~~~iv~Vvt~~~~~~gr~~~~~~~pv~~~A~~~gIp~~~v~~~~~~~~   82 (334)
T PLN02285          3 SGRKKRLVFLGTPEVAATVLDALLDASQAPDSAFEVAAVVTQPPARRGRGRKLMPSPVAQLALDRGFPPDLIFTPEKAGE   82 (334)
T ss_pred             CCCccEEEEEECCHHHHHHHHHHHhhhhccCCCCeEEEEEeCCCCcccCCcccCCCHHHHHHHHcCCCcceecCccccCC
Confidence            47899999999998  4899999999988988899999999998742       24799999999999775543233334


Q ss_pred             HHHHHHhc--CCcEEEEeccCCCCcCchhhhhhhhhhhhhccCCCccccccccCCHhHHhhcCCCeeEeCCCCCCCCCCC
Q 021895          196 EELLELVQ--NTDFLVLARYMQPVPLQKEAYLGYKLLESLSSKGSLTSYFNMILSGKFLRSYGKDVINIHHGLLPSFKGG  273 (306)
Q Consensus       196 ~e~~~~v~--~~D~vVlA~ym~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~~~l~~~~~~iINiHpsLLP~f~Ga  273 (306)
                      +++++.++  ++|++|+++||+                              ||++++++.++.++||+||||||+|||+
T Consensus        83 ~~~~~~l~~~~~Dliv~~~~~~------------------------------ilp~~~l~~~~~g~iNiHpSLLP~yRG~  132 (334)
T PLN02285         83 EDFLSALRELQPDLCITAAYGN------------------------------ILPQKFLDIPKLGTVNIHPSLLPLYRGA  132 (334)
T ss_pred             HHHHHHHHhhCCCEEEhhHhhh------------------------------hcCHHHHhhccCCEEEEecccccCCCCc
Confidence            56666665  899999999999                              9999999999999999999999999999


Q ss_pred             cHHHHHHHHHhhcCc
Q 021895          274 KPAKQVGCFTFCLGN  288 (306)
Q Consensus       274 ~p~~~A~~~~~~l~~  288 (306)
                      +|++||+...-...|
T Consensus       133 ~pi~~ai~~G~~~tG  147 (334)
T PLN02285        133 APVQRALQDGVNETG  147 (334)
T ss_pred             CHHHHHHHcCCCcEE
Confidence            999999655444333

>PF00551 Formyl_trans_N: Formyl transferase; InterPro: IPR002376 A number of formyl transferases belong to this group

Probab=99.90  E-value=2.7e-23  Score=182.09  Aligned_cols=125  Identities=31%  Similarity=0.409  Sum_probs=104.5

Q ss_pred             ceEEEEEeCCcchHHHHHHhhhcCCCCeEEEEEeeCCCCCCChhHHHHHHhCCCCEEEeCCCC-C---ChHHHHHHHhc-
Q 021895          129 YKVAVLASKQEHCLVDFLYGWQEGKLPVEITCVISNHDRGPNSHVIRFLERHGIPYHYLCAKE-N---EREEELLELVQ-  203 (306)
Q Consensus       129 ~riavl~S~~g~~L~~ll~~~~~g~l~~~I~~Visn~~~~~~~~~~~~A~~~gIp~~~~~~k~-~---~~e~e~~~~v~-  203 (306)
                      +||+||+||+++|++++|++++++...++|++||||+|+   ..++.++.+.++|...+.... .   ..++++.+.++ 
T Consensus         1 mrI~~~~Sg~~~~~~~~l~~l~~~~~~~~iv~Vit~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~   77 (181)
T PF00551_consen    1 MRIVFFGSGSGSFLKALLEALKARGHNVEIVLVITNPDK---PRGRSRAIKNGIPAQVADEKNFQPRSENDEELLELLES   77 (181)
T ss_dssp             EEEEEEESSSSHHHHHHHHHHHTTSSEEEEEEEEESSTT---THHHHHHHHTTHHEEEHHGGGSSSHHHHHHHHHHHHHH
T ss_pred             CEEEEEEcCCCHHHHHHHHHHHhCCCCceEEEEeccccc---cccccccccCCCCEEeccccCCCchHhhhhHHHHHHHh
Confidence            699999999999999999999988877899999999965   467899999999999887432 1   23467888886 


Q ss_pred             -CCcEEEEeccCCCCcCchhhhhhhhhhhhhccCCCccccccccCCHhHHhhcCCCeeEeCCCCCCCCCCCcHHHHHHHH
Q 021895          204 -NTDFLVLARYMQPVPLQKEAYLGYKLLESLSSKGSLTSYFNMILSGKFLRSYGKDVINIHHGLLPSFKGGKPAKQVGCF  282 (306)
Q Consensus       204 -~~D~vVlA~ym~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~~~l~~~~~~iINiHpsLLP~f~Ga~p~~~A~~~  282 (306)
                       ++|++|++|||+                              |+++++++.|+.++||+|||+||.|||++|++||+..
T Consensus        78 ~~~Dl~v~~~~~~------------------------------il~~~~l~~~~~~~iNiHpslLP~yrG~~p~~~ai~~  127 (181)
T PF00551_consen   78 LNPDLIVVAGYGR------------------------------ILPKEFLSIPPYGIINIHPSLLPKYRGASPIQWAILN  127 (181)
T ss_dssp             TT-SEEEESS-SS---------------------------------HHHHHHSTTSEEEEESSSTTTTBSSTHHHHHHHH
T ss_pred             hccceeehhhhHH------------------------------HhhhhhhhcccccEEEEeecCCccCCCcchhhhhhcC
Confidence             999999999999                              9999999999999999999999999999999999766


Q ss_pred             Hhhc
Q 021895          283 TFCL  286 (306)
Q Consensus       283 ~~~l  286 (306)
                      .-..
T Consensus       128 g~~~  131 (181)
T PF00551_consen  128 GEKE  131 (181)
T ss_dssp             TSSE
T ss_pred             Ccce
Confidence            5443

Methionyl-tRNA formyltransferase transfers a formyl group onto the amino terminus of the acyl moiety of the methionyl aminoacyl-tRNA. The formyl group appears to play a dual role in the initiator identity of N-formylmethionyl-tRNA by promoting its recognition by IF2 and by impairing its binding to EFTU-GTP. Formyltetrahydrofolate dehydrogenase produces formate from formyl- tetrahydrofolate. This is the N-terminal domain of these enzymes and is found upstream of the C-terminal domain (IPR005793 from INTERPRO). The trifunctional glycinamide ribonucleotide synthetase-aminoimidazole ribonucleotide synthetase-glycinamide ribonucleotide transformylase catalyses the second, third and fifth steps in de novo purine biosynthesis. The glycinamide ribonucleotide transformylase belongs to this group.; GO: 0016742 hydroxymethyl-, formyl- and related transferase activity, 0009058 biosynthetic process; PDB: 3P9X_B 3OBI_A 3R8X_A 3KCQ_C 3RFO_D 3AV3_A 3N0V_D 3LOU_A 3O1L_A 4DS3_A ....

>COG0223 Fmt Methionyl-tRNA formyltransferase [Translation, ribosomal structure and biogenesis]

Probab=99.86  E-value=7.5e-22  Score=188.44  Aligned_cols=117  Identities=25%  Similarity=0.344  Sum_probs=99.3

Q ss_pred             CceEEEEEeCCc--chHHHHHHhhhcCCCCeEEEEEeeCCCCCC-------ChhHHHHHHhCCCCEEEeCCCCCChHHHH
Q 021895          128 KYKVAVLASKQE--HCLVDFLYGWQEGKLPVEITCVISNHDRGP-------NSHVIRFLERHGIPYHYLCAKENEREEEL  198 (306)
Q Consensus       128 ~~riavl~S~~g--~~L~~ll~~~~~g~l~~~I~~Visn~~~~~-------~~~~~~~A~~~gIp~~~~~~k~~~~e~e~  198 (306)
                      ++||+||++.+.  .+|++|++.      +++|++|+|.+|+..       .+++.++|.+||||++.... -  +.+|+
T Consensus         1 ~mkivF~GTp~fa~~~L~~L~~~------~~eivaV~Tqpdkp~gR~~~l~~spVk~~A~~~~ipv~qP~~-l--~~~e~   71 (307)
T COG0223           1 MMRIVFFGTPEFAVPSLEALIEA------GHEIVAVVTQPDKPAGRGKKLTPSPVKRLALELGIPVFQPEK-L--NDPEF   71 (307)
T ss_pred             CcEEEEEcCchhhHHHHHHHHhC------CCceEEEEeCCCCccCCCCcCCCChHHHHHHHcCCceecccc-C--CcHHH
Confidence            479999999986  789999873      489999999999852       37999999999999888542 1  22245


Q ss_pred             HHHhc--CCcEEEEeccCCCCcCchhhhhhhhhhhhhccCCCccccccccCCHhHHhhcCCCeeEeCCCCCCCCCCCcHH
Q 021895          199 LELVQ--NTDFLVLARYMQPVPLQKEAYLGYKLLESLSSKGSLTSYFNMILSGKFLRSYGKDVINIHHGLLPSFKGGKPA  276 (306)
Q Consensus       199 ~~~v~--~~D~vVlA~ym~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~~~l~~~~~~iINiHpsLLP~f~Ga~p~  276 (306)
                      .+.+.  ++|++|++.|+|                              ||+.++++.++.++||+|+||||+|||++|+
T Consensus        72 ~~~l~~l~~D~ivvvayG~------------------------------ilp~~iL~~~~~G~iNvH~SLLPr~RGaAPI  121 (307)
T COG0223          72 LEELAALDPDLIVVVAYGQ------------------------------ILPKEILDLPPYGCINLHPSLLPRYRGAAPI  121 (307)
T ss_pred             HHHHhccCCCEEEEEehhh------------------------------hCCHHHHhcCcCCeEEecCccCccccCccHH
Confidence            55555  899999999999                              9999999999999999999999999999999


Q ss_pred             HHHHHHH
Q 021895          277 KQVGCFT  283 (306)
Q Consensus       277 ~~A~~~~  283 (306)
                      +||+...
T Consensus       122 q~aI~~G  128 (307)
T COG0223         122 QWAILNG  128 (307)
T ss_pred             HHHHHcC
Confidence            9995433

>PRK06988 putative formyltransferase; Provisional

Probab=99.82  E-value=5.7e-20  Score=174.57  Aligned_cols=116  Identities=24%  Similarity=0.358  Sum_probs=97.6

Q ss_pred             CceEEEEEeCCc--chHHHHHHhhhcCCCCeEEEEEeeCCCCCC----ChhHHHHHHhCCCCEEEeCCCCCChHHHHHHH
Q 021895          128 KYKVAVLASKQE--HCLVDFLYGWQEGKLPVEITCVISNHDRGP----NSHVIRFLERHGIPYHYLCAKENEREEELLEL  201 (306)
Q Consensus       128 ~~riavl~S~~g--~~L~~ll~~~~~g~l~~~I~~Visn~~~~~----~~~~~~~A~~~gIp~~~~~~k~~~~e~e~~~~  201 (306)
                      ++||+||+|+..  .||++|++.      ..+|++|+|++|+..    .+++.++|+++|||++....   ..++++.+.
T Consensus         2 ~mkIvf~Gs~~~a~~~L~~L~~~------~~~i~~Vvt~~d~~~~~~~~~~v~~~A~~~gip~~~~~~---~~~~~~~~~   72 (312)
T PRK06988          2 KPRAVVFAYHNVGVRCLQVLLAR------GVDVALVVTHEDNPTENIWFGSVAAVAAEHGIPVITPAD---PNDPELRAA   72 (312)
T ss_pred             CcEEEEEeCcHHHHHHHHHHHhC------CCCEEEEEcCCCCCccCcCCCHHHHHHHHcCCcEEcccc---CCCHHHHHH
Confidence            479999999973  799998863      378999999987632    35899999999999987432   223456666


Q ss_pred             hc--CCcEEEEeccCCCCcCchhhhhhhhhhhhhccCCCccccccccCCHhHHhhcCCCeeEeCCCCCCCCCCCcHHHHH
Q 021895          202 VQ--NTDFLVLARYMQPVPLQKEAYLGYKLLESLSSKGSLTSYFNMILSGKFLRSYGKDVINIHHGLLPSFKGGKPAKQV  279 (306)
Q Consensus       202 v~--~~D~vVlA~ym~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~~~l~~~~~~iINiHpsLLP~f~Ga~p~~~A  279 (306)
                      ++  ++|++|+++|++                              |+++++++.++.++||+||||||+|||++|++||
T Consensus        73 l~~~~~Dliv~~~~~~------------------------------iip~~il~~~~~g~iNiHpslLP~yRG~~pi~~a  122 (312)
T PRK06988         73 VAAAAPDFIFSFYYRH------------------------------MIPVDLLALAPRGAYNMHGSLLPKYRGRVPVNWA  122 (312)
T ss_pred             HHhcCCCEEEEehhcc------------------------------ccCHHHHhcCCCCEEEeeCccccCCCCcCHHHHH
Confidence            65  899999999999                              9999999999999999999999999999999999


Q ss_pred             HHH
Q 021895          280 GCF  282 (306)
Q Consensus       280 ~~~  282 (306)
                      +..
T Consensus       123 i~~  125 (312)
T PRK06988        123 VLN  125 (312)
T ss_pred             HHc
Confidence            544

>TIGR00460 fmt methionyl-tRNA formyltransferase

Probab=99.81  E-value=1.5e-19  Score=171.49  Aligned_cols=115  Identities=24%  Similarity=0.400  Sum_probs=96.1

Q ss_pred             ceEEEEEeCCc--chHHHHHHhhhcCCCCeEEEEEeeCCCCCC-------ChhHHHHHHhCCCCEEEeCCCCCChHHHHH
Q 021895          129 YKVAVLASKQE--HCLVDFLYGWQEGKLPVEITCVISNHDRGP-------NSHVIRFLERHGIPYHYLCAKENEREEELL  199 (306)
Q Consensus       129 ~riavl~S~~g--~~L~~ll~~~~~g~l~~~I~~Visn~~~~~-------~~~~~~~A~~~gIp~~~~~~k~~~~e~e~~  199 (306)
                      +||+||+|+..  .||++|++.      +.+|++|+|++|+..       .+++.++|+++|||++......   +++++
T Consensus         1 mkIvf~Gs~~~a~~~L~~L~~~------~~~i~~Vvt~pd~~~~r~~~~~~~~v~~~A~~~~Ipv~~~~~~~---~~~~~   71 (313)
T TIGR00460         1 LRIVFFGTPTFSLPVLEELRED------NFEVVGVVTQPDKPAGRGKKLTPPPVKVLAEEKGIPVFQPEKQR---QLEEL   71 (313)
T ss_pred             CEEEEECCCHHHHHHHHHHHhC------CCcEEEEEcCCCCccCCCCCCCCChHHHHHHHcCCCEEecCCCC---cHHHH
Confidence            59999999975  788888763      379999999987631       3579999999999998865321   22445


Q ss_pred             HHhc--CCcEEEEeccCCCCcCchhhhhhhhhhhhhccCCCccccccccCCHhHHhhcCCCeeEeCCCCCCCCCCCcHHH
Q 021895          200 ELVQ--NTDFLVLARYMQPVPLQKEAYLGYKLLESLSSKGSLTSYFNMILSGKFLRSYGKDVINIHHGLLPSFKGGKPAK  277 (306)
Q Consensus       200 ~~v~--~~D~vVlA~ym~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~~~l~~~~~~iINiHpsLLP~f~Ga~p~~  277 (306)
                      +.++  ++|++|+++|++                              ||++++++.++.++||+||||||+|||++|++
T Consensus        72 ~~l~~~~~Dliv~~~~~~------------------------------iip~~il~~~~~g~iNiHpSlLP~yRG~~pi~  121 (313)
T TIGR00460        72 PLVRELKPDVIVVVSFGK------------------------------ILPKEFLDLFPYGCINVHPSLLPRWRGGAPIQ  121 (313)
T ss_pred             HHHHhhCCCEEEEccchh------------------------------hCCHHHHhhccCCEEEecCccccCCCCccHHH
Confidence            5555  999999999999                              99999999999999999999999999999999


Q ss_pred             HHHHH
Q 021895          278 QVGCF  282 (306)
Q Consensus       278 ~A~~~  282 (306)
                      ||+..
T Consensus       122 wai~~  126 (313)
T TIGR00460       122 RAILN  126 (313)
T ss_pred             HHHHC
Confidence            99544

The top-scoring characterized proteins other than methionyl-tRNA formyltransferase (fmt) itself are formyltetrahydrofolate dehydrogenases. The mitochondrial methionyl-tRNA formyltransferases are so divergent that, in a multiple alignment of bacterial fmt, mitochondrial fmt, and formyltetrahydrofolate dehydrogenases, the mitochondrial fmt appears the most different. However, because both bacterial and mitochondrial fmt are included in the seed alignment, all credible fmt sequences score higher than any non-fmt sequence. This enzyme modifies Met on initiator tRNA to f-Met.

>PRK00005 fmt methionyl-tRNA formyltransferase; Reviewed

Probab=99.80  E-value=1.9e-19  Score=170.14  Aligned_cols=117  Identities=26%  Similarity=0.363  Sum_probs=97.4

Q ss_pred             ceEEEEEeCCc--chHHHHHHhhhcCCCCeEEEEEeeCCCCC-------CChhHHHHHHhCCCCEEEeCCCCCChHHHHH
Q 021895          129 YKVAVLASKQE--HCLVDFLYGWQEGKLPVEITCVISNHDRG-------PNSHVIRFLERHGIPYHYLCAKENEREEELL  199 (306)
Q Consensus       129 ~riavl~S~~g--~~L~~ll~~~~~g~l~~~I~~Visn~~~~-------~~~~~~~~A~~~gIp~~~~~~k~~~~e~e~~  199 (306)
                      +||+||+|+..  .||+.|++.      ..+|++|||.+|+.       ..+++.++|+++|||++.... -  +++++.
T Consensus         1 mkIvf~G~~~~a~~~L~~L~~~------~~~i~~Vvt~~~~~~~r~~~~~~~~v~~~a~~~~Ip~~~~~~-~--~~~~~~   71 (309)
T PRK00005          1 MRIVFMGTPEFAVPSLKALLES------GHEVVAVVTQPDRPAGRGKKLTPSPVKQLALEHGIPVLQPEK-L--RDPEFL   71 (309)
T ss_pred             CEEEEECCCHHHHHHHHHHHHC------CCcEEEEECCCCCCCCCCCCCCCCHHHHHHHHcCCCEECcCC-C--CCHHHH
Confidence            59999999875  789888763      37899999987652       135799999999999977542 1  234556


Q ss_pred             HHhc--CCcEEEEeccCCCCcCchhhhhhhhhhhhhccCCCccccccccCCHhHHhhcCCCeeEeCCCCCCCCCCCcHHH
Q 021895          200 ELVQ--NTDFLVLARYMQPVPLQKEAYLGYKLLESLSSKGSLTSYFNMILSGKFLRSYGKDVINIHHGLLPSFKGGKPAK  277 (306)
Q Consensus       200 ~~v~--~~D~vVlA~ym~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~~~l~~~~~~iINiHpsLLP~f~Ga~p~~  277 (306)
                      +.++  ++|++|+++|++                              ||++++++.++.++||+||||||.|||++|++
T Consensus        72 ~~l~~~~~Dliv~~~~~~------------------------------iip~~il~~~~~g~iNiHpslLP~yRG~~pi~  121 (309)
T PRK00005         72 AELAALNADVIVVVAYGQ------------------------------ILPKAVLDIPRLGCINLHASLLPRWRGAAPIQ  121 (309)
T ss_pred             HHHHhcCcCEEEEehhhc------------------------------ccCHHHHhcCCCCEEEEeCcccccCCCccHHH
Confidence            6665  999999999999                              99999999999999999999999999999999


Q ss_pred             HHHHHHh
Q 021895          278 QVGCFTF  284 (306)
Q Consensus       278 ~A~~~~~  284 (306)
                      ||+...-
T Consensus       122 wai~~g~  128 (309)
T PRK00005        122 RAIIAGD  128 (309)
T ss_pred             HHHHcCC
Confidence            9965443

>cd04893 ACT_GcvR_1 ACT domains that comprise the Glycine Cleavage System Transcriptional Repressor (GcvR) protein, and other related domains

Probab=99.77  E-value=1.4e-18  Score=133.69  Aligned_cols=71  Identities=15%  Similarity=0.135  Sum_probs=65.8

Q ss_pred             cEEEEEEcCCccchHHHHHHHHHhcCCeEeEeeeeccCCCCeEEEEEEEEeCCCCCCHHHHHHHHHHHHhhhhcc
Q 021895           42 HGIHVFHCPDEVGIVAKLSECIASRGGNILAADVFVPEKKNVFYSRSEFIFDPIKWPREQMDEDFFKLSKMFNAM  116 (306)
Q Consensus        42 k~ILTViGpDRpGIVAaVS~~LAe~G~NIlD~sQ~id~l~G~FfMrmeVdv~~~~~~~eeLreaL~~la~elgl~  116 (306)
                      ++|||++|||||||||+||++|+++||||+|++|+.  .+|.|+||++++.+.  .+.++|+++|+++++++|+.
T Consensus         1 ~~iltv~g~Dr~GiVa~vs~~la~~g~nI~d~~q~~--~~~~F~m~~~~~~~~--~~~~~l~~~l~~~~~~~~l~   71 (77)
T cd04893           1 HLVISALGTDRPGILNELTRAVSESGCNILDSRMAI--LGTEFALTMLVEGSW--DAIAKLEAALPGLARRLDLT   71 (77)
T ss_pred             CEEEEEEeCCCChHHHHHHHHHHHcCCCEEEceeeE--EcCEEEEEEEEEecc--ccHHHHHHHHHHHHHHcCCE
Confidence            479999999999999999999999999999999997  489999999999874  47899999999999999863

This CD includes the first of the two ACT domains that comprise the Glycine Cleavage System Transcriptional Repressor (GcvR) protein, and other related domains. The glycine cleavage enzyme system in Escherichia coli provides one-carbon units for cellular methylation reactions. This enzyme system, encoded by the gcvTHP operon and lpd gene, catalyzes the cleavage of glycine into CO2 + NH3 and transfers a one-carbon unit to tetrahydrofolate, producing 5,10-methylenetetrahydrofolate. The gcvTHP operon is activated by the GcvA protein in response to glycine and repressed by a GcvA/GcvR interaction in the absence of glycine. It has been proposed that the co-activator glycine acts through a mechanism of de-repression by binding to GcvR and preventing GcvR from interacting with GcvA to block GcvA's activator function. Evidence also suggests that GcvR int

>PRK08125 bifunctional UDP-glucuronic acid decarboxylase/UDP-4-amino-4-deoxy-L-arabinose formyltransferase; Validated

Probab=99.75  E-value=6.5e-18  Score=173.10  Aligned_cols=115  Identities=23%  Similarity=0.284  Sum_probs=96.2

Q ss_pred             ceEEEEEeCCc--chHHHHHHhhhcCCCCeEEEEEeeCCCCCC----ChhHHHHHHhCCCCEEEeCCCCCChHHHHHHHh
Q 021895          129 YKVAVLASKQE--HCLVDFLYGWQEGKLPVEITCVISNHDRGP----NSHVIRFLERHGIPYHYLCAKENEREEELLELV  202 (306)
Q Consensus       129 ~riavl~S~~g--~~L~~ll~~~~~g~l~~~I~~Visn~~~~~----~~~~~~~A~~~gIp~~~~~~k~~~~e~e~~~~v  202 (306)
                      +||+||+|++.  .+|++|++.      ..+|++|+|.+|++.    .+++.++|+++|||++.....   +++++++.+
T Consensus         1 mkivf~g~~~~a~~~l~~L~~~------~~~i~~V~t~pd~~~~~~~~~~v~~~a~~~~ip~~~~~~~---~~~~~~~~l   71 (660)
T PRK08125          1 MKAVVFAYHDIGCVGIEALLAA------GYEIAAVFTHTDNPGENHFFGSVARLAAELGIPVYAPEDV---NHPLWVERI   71 (660)
T ss_pred             CeEEEECCCHHHHHHHHHHHHC------CCcEEEEEeCCCCCcCCCCcCHHHHHHHHcCCcEEeeCCC---CcHHHHHHH
Confidence            58999999875  788888753      378999999987632    247899999999999885421   233455666


Q ss_pred             c--CCcEEEEeccCCCCcCchhhhhhhhhhhhhccCCCccccccccCCHhHHhhcCCCeeEeCCCCCCCCCCCcHHHHHH
Q 021895          203 Q--NTDFLVLARYMQPVPLQKEAYLGYKLLESLSSKGSLTSYFNMILSGKFLRSYGKDVINIHHGLLPSFKGGKPAKQVG  280 (306)
Q Consensus       203 ~--~~D~vVlA~ym~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~~~l~~~~~~iINiHpsLLP~f~Ga~p~~~A~  280 (306)
                      +  ++|++|+++|++                              ||++++++.++.++||+||||||+|||++|++||+
T Consensus        72 ~~~~~D~iv~~~~~~------------------------------ii~~~il~~~~~g~iN~H~slLP~yRG~~p~~wai  121 (660)
T PRK08125         72 RELAPDVIFSFYYRN------------------------------LLSDEILQLAPAGAFNLHGSLLPKYRGRAPLNWVL  121 (660)
T ss_pred             HhcCCCEEEEccccc------------------------------cCCHHHHhhcCCCEEEEeCCcccCCCCcCHHHHHH
Confidence            5  899999999999                              99999999999999999999999999999999995


Q ss_pred             HH
Q 021895          281 CF  282 (306)
Q Consensus       281 ~~  282 (306)
                      ..
T Consensus       122 ~~  123 (660)
T PRK08125        122 VN  123 (660)
T ss_pred             Hc
Confidence            44

>COG3830 ACT domain-containing protein [Signal transduction mechanisms]

Probab=99.72  E-value=5.9e-18  Score=136.31  Aligned_cols=75  Identities=20%  Similarity=0.143  Sum_probs=71.3

Q ss_pred             cccEEEEEEcCCccchHHHHHHHHHhcCCeEeEeeeeccCCCCeEEEEEEEEeCCCCCCHHHHHHHHHHHHhhhhcc
Q 021895           40 LTHGIHVFHCPDEVGIVAKLSECIASRGGNILAADVFVPEKKNVFYSRSEFIFDPIKWPREQMDEDFFKLSKMFNAM  116 (306)
Q Consensus        40 ~~k~ILTViGpDRpGIVAaVS~~LAe~G~NIlD~sQ~id~l~G~FfMrmeVdv~~~~~~~eeLreaL~~la~elgl~  116 (306)
                      ++++|+||+|+||+||||+||+.||++|+||+|++|+++  +|+|+|++.|++++...+..+++++|++.++++|+.
T Consensus         1 ~~~avITV~GkDr~GIva~is~vLAe~~vNIldisQtvm--~~~ftm~~lV~~~~~~~d~~~lr~~l~~~~~~lgv~   75 (90)
T COG3830           1 KMRAVITVIGKDRVGIVAAVSRVLAEHGVNILDISQTVM--DGFFTMIMLVDISKEVVDFAALRDELAAEGKKLGVD   75 (90)
T ss_pred             CceEEEEEEcCCCCchhHHHHHHHHHcCCcEEEHHHHHH--hhhceeeeEEcCChHhccHHHHHHHHHHHHHhcCcE
Confidence            478999999999999999999999999999999999987  899999999999988899999999999999999963

>cd04875 ACT_F4HF-DF N-terminal ACT domain of formyltetrahydrofolate deformylase (F4HF-DF; formyltetrahydrofolate hydrolase)

Probab=99.69  E-value=1.3e-16  Score=120.61  Aligned_cols=72  Identities=35%  Similarity=0.644  Sum_probs=66.6

Q ss_pred             EEEEEcCCccchHHHHHHHHHhcCCeEeEeeeeccCCCCeEEEEEEEEeCCCCCCHHHHHHHHHHHHhhhhc
Q 021895           44 IHVFHCPDEVGIVAKLSECIASRGGNILAADVFVPEKKNVFYSRSEFIFDPIKWPREQMDEDFFKLSKMFNA  115 (306)
Q Consensus        44 ILTViGpDRpGIVAaVS~~LAe~G~NIlD~sQ~id~l~G~FfMrmeVdv~~~~~~~eeLreaL~~la~elgl  115 (306)
                      ||++.|+||||||++||++|+++||||++++|+.+...+.|+|++++++++.+.+.++|+++|+++++++++
T Consensus         1 ii~v~g~D~~Giv~~it~~l~~~g~nI~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~l~~~l~~l~~~l~~   72 (74)
T cd04875           1 ILTLSCPDRPGIVAAVSGFLAEHGGNIVESDQFVDPDSGRFFMRVEFELEGFDLSREALEAAFAPVAAEFDM   72 (74)
T ss_pred             CEEEEcCCCCCHHHHHHHHHHHcCCCEEeeeeeecCCCCeEEEEEEEEeCCCCCCHHHHHHHHHHHHHHcCC
Confidence            689999999999999999999999999999999766788999999999986446899999999999999985

This CD includes the N-terminal ACT domain of formyltetrahydrofolate deformylase (F4HF-DF; formyltetrahydrofolate hydrolase) which catalyzes the hydrolysis of 10-formyltetrahydrofolate (formyl-FH4) to FH4 and formate. Formyl-FH4 hydrolase generates the formate that is used by purT-encoded 5'-phosphoribosylglycinamide transformylase for step three of de novo purine nucleotide synthesis. Formyl-FH4 hydrolase, a hexamer which is activated by methionine and inhibited by glycine, is proposed to regulate the balance FH4 and C1-FH4 in response to changing growth conditions. Members of this CD belong to the superfamily of ACT regulatory domains.

>cd04872 ACT_1ZPV ACT domain proteins similar to the yet uncharacterized Streptococcus pneumoniae ACT domain protein

Probab=99.65  E-value=5e-16  Score=121.32  Aligned_cols=74  Identities=20%  Similarity=0.159  Sum_probs=67.7

Q ss_pred             cEEEEEEcCCccchHHHHHHHHHhcCCeEeEeeeeccCCCCeEEEEEEEEeCCCCCCHHHHHHHHHHHHhhhhccc
Q 021895           42 HGIHVFHCPDEVGIVAKLSECIASRGGNILAADVFVPEKKNVFYSRSEFIFDPIKWPREQMDEDFFKLSKMFNAMR  117 (306)
Q Consensus        42 k~ILTViGpDRpGIVAaVS~~LAe~G~NIlD~sQ~id~l~G~FfMrmeVdv~~~~~~~eeLreaL~~la~elgl~~  117 (306)
                      +++++++|+||||||++||++|+++||||++++|++.  .+.|+|+++++.++...+.++|+++|+++++++|+.+
T Consensus         1 ~~vl~i~g~D~pGiva~vt~~la~~g~nI~~~~~~~~--~~~f~~~~~v~~~~~~~~~~~L~~~l~~l~~~~~l~~   74 (88)
T cd04872           1 KAVITVVGKDRVGIVAGVSTKLAELNVNILDISQTIM--DGYFTMIMIVDISESNLDFAELQEELEELGKELGVKI   74 (88)
T ss_pred             CEEEEEEcCCCCCHHHHHHHHHHHcCCCEEechhHhh--CCccEEEEEEEeCCCCCCHHHHHHHHHHHHHHcCCEE
Confidence            5899999999999999999999999999999999874  7999999999998534679999999999999999754

This CD, ACT_1ZPV, includes those single ACT domain proteins similar to the yet uncharacterized Streptococcus pneumoniae ACT domain protein (pdb structure 1ZPV). Members of this CD belong to the superfamily of ACT regulatory domains.

>PRK07579 hypothetical protein; Provisional

Probab=99.64  E-value=8.9e-16  Score=142.93  Aligned_cols=110  Identities=21%  Similarity=0.253  Sum_probs=87.8

Q ss_pred             CceEEEEEeCCc--chHHHHHHhhhcCCCCeEEEEEeeCCCCCCChhHHHHHH-hCCCCEEEeCCCCCChHHHHHHHhcC
Q 021895          128 KYKVAVLASKQE--HCLVDFLYGWQEGKLPVEITCVISNHDRGPNSHVIRFLE-RHGIPYHYLCAKENEREEELLELVQN  204 (306)
Q Consensus       128 ~~riavl~S~~g--~~L~~ll~~~~~g~l~~~I~~Visn~~~~~~~~~~~~A~-~~gIp~~~~~~k~~~~e~e~~~~v~~  204 (306)
                      ++||.|++.+.-  .|+++|+.+.  ..+.+++.||.++++.        +++ .+++|.+.++     -.+.+.+++.+
T Consensus         1 ~k~i~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~-----~~~~~~~~~~~   65 (245)
T PRK07579          1 MKTILVLTDNVHAHALAVDLIARK--NDMDVDYFCSFKSQTS--------FAKEIYQSPIKQLD-----VAERVAEIVER   65 (245)
T ss_pred             CceEEEEcccHHHHHHHHHHHhhc--cCcceEEEEeccCCcc--------cccccccccccCcc-----hhhhHHhhhcC
Confidence            469999999863  6999999874  4668999999998742        222 4456644443     23457777789


Q ss_pred             CcEEEEeccCCCCcCchhhhhhhhhhhhhccCCCccccccccCCHhHHhhcCCCeeEeCCCCCCCCCCCcHHHHHHHHHh
Q 021895          205 TDFLVLARYMQPVPLQKEAYLGYKLLESLSSKGSLTSYFNMILSGKFLRSYGKDVINIHHGLLPSFKGGKPAKQVGCFTF  284 (306)
Q Consensus       205 ~D~vVlA~ym~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~~~l~~~~~~iINiHpsLLP~f~Ga~p~~~A~~~~~  284 (306)
                      +|++|+++|||                              ||++++++.+  ++||+||||||.|||++|++||+...-
T Consensus        66 ~DliVvvayg~------------------------------ilp~~iL~~~--~~iNiHpSLLP~yRGaaPi~wAI~nGe  113 (245)
T PRK07579         66 YDLVLSFHCKQ------------------------------RFPAKLVNGV--RCINIHPGFNPYNRGWFPQVFSIINGL  113 (245)
T ss_pred             CCEEEEchhhc------------------------------cCCHHHHhhC--CEEEEcCCcCCCCCCcCHHHHHHHCCC
Confidence            99999999999                              9999999987  599999999999999999999965443

>PRK00194 hypothetical protein; Validated

Probab=99.62  E-value=1.1e-15  Score=119.35  Aligned_cols=76  Identities=21%  Similarity=0.178  Sum_probs=68.5

Q ss_pred             cccEEEEEEcCCccchHHHHHHHHHhcCCeEeEeeeeccCCCCeEEEEEEEEeCCCCCCHHHHHHHHHHHHhhhhccc
Q 021895           40 LTHGIHVFHCPDEVGIVAKLSECIASRGGNILAADVFVPEKKNVFYSRSEFIFDPIKWPREQMDEDFFKLSKMFNAMR  117 (306)
Q Consensus        40 ~~k~ILTViGpDRpGIVAaVS~~LAe~G~NIlD~sQ~id~l~G~FfMrmeVdv~~~~~~~eeLreaL~~la~elgl~~  117 (306)
                      ++++++|+.|+||||||++||++|+++|+||++++++..  .|.|+|+++++.+..+.+.++|+++|+++++++++.+
T Consensus         1 ~~~~~ltv~g~DrpGiva~vt~~la~~g~nI~~~~~~~~--~~~~~~~~~v~~~~~~~~~~~l~~~l~~l~~~~~~~~   76 (90)
T PRK00194          1 MMKAIITVIGKDKVGIIAGVSTVLAELNVNILDISQTIM--DGYFTMIMLVDISESKKDFAELKEELEELGKELGVKI   76 (90)
T ss_pred             CceEEEEEEcCCCCCHHHHHHHHHHHcCCCEEehhhHhh--CCeeEEEEEEEecCCCCCHHHHHHHHHHHHHHcCCEE
Confidence            358999999999999999999999999999999999864  7899999999998534578999999999999999743

>cd04870 ACT_PSP_1 CT domains found N-terminal of phosphoserine phosphatase (PSP, SerB)

Probab=99.60  E-value=3e-15  Score=113.93  Aligned_cols=69  Identities=17%  Similarity=0.177  Sum_probs=63.8

Q ss_pred             EEEEEcCCccchHHHHHHHHHhcCCeEeEeeeeccCCCCeEEEEEEEEeCCCCCCHHHHHHHHHHHHhhhhc
Q 021895           44 IHVFHCPDEVGIVAKLSECIASRGGNILAADVFVPEKKNVFYSRSEFIFDPIKWPREQMDEDFFKLSKMFNA  115 (306)
Q Consensus        44 ILTViGpDRpGIVAaVS~~LAe~G~NIlD~sQ~id~l~G~FfMrmeVdv~~~~~~~eeLreaL~~la~elgl  115 (306)
                      ++||.|+||||||++||++|+++||||+|++|.+.  .+.|.|.+.++.|+ ..+.++|+++|+.+++++|+
T Consensus         1 ~vtv~G~DrpGiv~~vt~~la~~~~nI~dl~~~~~--~~~f~~~~~v~~p~-~~~~~~l~~~l~~l~~~l~l   69 (75)
T cd04870           1 LITVTGPDRPGLTSALTEVLAAHGVRILDVGQAVI--HGRLSLGILVQIPD-SADSEALLKDLLFKAHELGL   69 (75)
T ss_pred             CEEEEcCCCCCHHHHHHHHHHHCCCCEEecccEEE--cCeeEEEEEEEcCC-CCCHHHHHHHHHHHHHHcCc
Confidence            58999999999999999999999999999998765  68999999999986 46899999999999999986

The ACT_PSP_1 CD includes the first of the two ACT domains found N-terminal of phosphoserine phosphatase (PSP, SerB). PSPs belong to the L-2-haloacid dehalogenase-like protein superfamily. PSP is involved in serine metabolism; serine is synthesized from phosphoglycerate through sequential reactions catalyzed by 3-phosphoglycerate dehydrogenase (SerA), 3-phosphoserine aminotransferase (SerC), and SerB. Members of this CD belong to the superfamily of ACT regulatory domains.

>PF13740 ACT_6: ACT domain; PDB: 1ZPV_A 3P96_A 1U8S_A

Probab=99.60  E-value=1.6e-15  Score=116.27  Aligned_cols=72  Identities=19%  Similarity=0.164  Sum_probs=62.7

Q ss_pred             ccEEEEEEcCCccchHHHHHHHHHhcCCeEeEeeeeccCCCCeEEEEEEEEeCCCCCCHHHHHHHHHHHHhhhhcc
Q 021895           41 THGIHVFHCPDEVGIVAKLSECIASRGGNILAADVFVPEKKNVFYSRSEFIFDPIKWPREQMDEDFFKLSKMFNAM  116 (306)
Q Consensus        41 ~k~ILTViGpDRpGIVAaVS~~LAe~G~NIlD~sQ~id~l~G~FfMrmeVdv~~~~~~~eeLreaL~~la~elgl~  116 (306)
                      ++++||+.|+||||||++||+.|+++||||+|++|...  +|+|.|.+.++.++.  +.++|+++|.++++++|+.
T Consensus         1 ~~~vItv~G~DrpGiv~~v~~~l~~~g~ni~d~~~~~~--~~~f~~~~~v~~~~~--~~~~l~~~L~~l~~~~~l~   72 (76)
T PF13740_consen    1 EQLVITVVGPDRPGIVAAVTGVLAEHGCNIEDSRQAVL--GGRFTLIMLVSIPED--SLERLESALEELAEELGLD   72 (76)
T ss_dssp             EEEEEEEEEE--TTHHHHHHHHHHCTT-EEEEEEEEEE--TTEEEEEEEEEESHH--HHHHHHHHHHHHHHHTT-E
T ss_pred             CEEEEEEEecCCCcHHHHHHHHHHHCCCcEEEEEEEEE--cCeEEEEEEEEeCcc--cHHHHHHHHHHHHHHCCcE
Confidence            36899999999999999999999999999999999865  899999999999853  7899999999999999963

>cd04869 ACT_GcvR_2 ACT domains that comprise the Glycine Cleavage System Transcriptional Repressor (GcvR) protein, and other related domains

Probab=99.57  E-value=1.2e-14  Score=110.23  Aligned_cols=72  Identities=17%  Similarity=0.179  Sum_probs=65.7

Q ss_pred             EEEEEcCCccchHHHHHHHHHhcCCeEeEeeeeccC----CCCeEEEEEEEEeCCCCCCHHHHHHHHHHHHhhhhcc
Q 021895           44 IHVFHCPDEVGIVAKLSECIASRGGNILAADVFVPE----KKNVFYSRSEFIFDPIKWPREQMDEDFFKLSKMFNAM  116 (306)
Q Consensus        44 ILTViGpDRpGIVAaVS~~LAe~G~NIlD~sQ~id~----l~G~FfMrmeVdv~~~~~~~eeLreaL~~la~elgl~  116 (306)
                      +|++.|+||+|||++||++|+++|+||.+++++...    ..+.|+|+++|++|+ ..+.++|+++|+.+++++|+.
T Consensus         1 ~l~v~g~D~~Giv~~it~~l~~~~~nI~~~~~~~~~~~~~~~~~~~~~~~v~~p~-~~~~~~l~~~l~~l~~~~~~~   76 (81)
T cd04869           1 VVEVVGNDRPGIVHEVTQFLAQRNINIEDLSTETYSAPMSGTPLFKAQATLALPA-GTDLDALREELEELCDDLNVD   76 (81)
T ss_pred             CEEEEeCCCCCHHHHHHHHHHHcCCCeEEeEeeeecCCCCCcceEEEEEEEecCC-CCCHHHHHHHHHHHHHHhcce
Confidence            589999999999999999999999999999998764    348999999999986 578999999999999999964

This CD includes the second of the two ACT domains that comprise the Glycine Cleavage System Transcriptional Repressor (GcvR) protein, and other related domains. The glycine cleavage enzyme system in Escherichia coli provides one-carbon units for cellular methylation reactions. This enzyme system, encoded by the gcvTHP operon and lpd gene, catalyzes the cleavage of glycine into CO2 + NH3 and transfers a one-carbon unit to tetrahydrofolate, producing 5,10-methylenetetrahydrofolate. The gcvTHP operon is activated by the GcvA protein in response to glycine and repressed by a GcvA/GcvR interaction in the absence of glycine. It has been proposed that the co-activator glycine acts through a mechanism of de-repression by binding to GcvR and preventing GcvR from interacting with GcvA to block GcvA's activator function. Evidence also suggests that GcvR in

>PRK11589 gcvR glycine cleavage system transcriptional repressor; Provisional

Probab=99.51  E-value=1.2e-13  Score=124.16  Aligned_cols=73  Identities=12%  Similarity=0.006  Sum_probs=65.8

Q ss_pred             cccEEEEEEcCCccchHHHHHHHHHhcCCeEeEeeeeccCCCCeEEEEEEEEeCCCCCCHHHHHHHHHHHHhhhhcc
Q 021895           40 LTHGIHVFHCPDEVGIVAKLSECIASRGGNILAADVFVPEKKNVFYSRSEFIFDPIKWPREQMDEDFFKLSKMFNAM  116 (306)
Q Consensus        40 ~~k~ILTViGpDRpGIVAaVS~~LAe~G~NIlD~sQ~id~l~G~FfMrmeVdv~~~~~~~eeLreaL~~la~elgl~  116 (306)
                      ++++|||++|+|||||||+||+.|+++||||+|++|+..  +|.|+|+|.++.+..  ..++|+++|..+++++|+.
T Consensus         6 ~~~lviTviG~DrpGIVa~vs~~l~~~g~NI~ds~~t~l--gg~Fa~i~lvs~~~~--~~~~le~~L~~l~~~~~L~   78 (190)
T PRK11589          6 QHYLVITALGADRPGIVNTITRHVSSCGCNIEDSRLAML--GEEFTFIMLLSGSWN--AITLIESTLPLKGAELDLL   78 (190)
T ss_pred             ccEEEEEEEcCCCChHHHHHHHHHHHcCCCeeehhhHhh--CCceEEEEEEeCChh--HHHHHHHHHHhhhhhcCeE
Confidence            477999999999999999999999999999999999754  899999999987653  7899999999999888763

>PRK11589 gcvR glycine cleavage system transcriptional repressor; Provisional

Probab=99.19  E-value=6.7e-11  Score=106.50  Aligned_cols=74  Identities=11%  Similarity=0.033  Sum_probs=66.2

Q ss_pred             cEEEEEEcCCccchHHHHHHHHHhcCCeEeEeeeeccC----CCCeEEEEEEEEeCCCCCCHHHHHHHHHHHHhhhhcc
Q 021895           42 HGIHVFHCPDEVGIVAKLSECIASRGGNILAADVFVPE----KKNVFYSRSEFIFDPIKWPREQMDEDFFKLSKMFNAM  116 (306)
Q Consensus        42 k~ILTViGpDRpGIVAaVS~~LAe~G~NIlD~sQ~id~----l~G~FfMrmeVdv~~~~~~~eeLreaL~~la~elgl~  116 (306)
                      .|.++|+|+||||||++||++|+++|+||.+++.....    ....|.|++++++|+ ..+.++|+++|+++++++++.
T Consensus        95 ~~~v~v~G~DrPGIV~~vT~~la~~~iNI~~L~T~~~~a~~~~~~lf~~~~~v~lP~-~~~~~~L~~~l~~l~~eL~vd  172 (190)
T PRK11589         95 TVWVQVEVADSPHLIERFTALFDSHHMNIAELVSRTQPAEGERPAQLHIQITAHSPA-SQDAANIEQAFKALCTELNAQ  172 (190)
T ss_pred             eEEEEEEECCCCCHHHHHHHHHHHcCCChhheEEeeecCCCCCcccEEEEEEEEcCC-CCCHHHHHHHHHHHHHHhCce
Confidence            59999999999999999999999999999999887532    234799999999996 567999999999999999964

>cd04871 ACT_PSP_2 ACT domains found N-terminal of phosphoserine phosphatase (PSP, SerB)

Probab=99.08  E-value=1.1e-10  Score=91.94  Aligned_cols=69  Identities=16%  Similarity=0.120  Sum_probs=58.1

Q ss_pred             EEEEEcCC-ccchHHHHHHHHHhcCCeEeEeeeeccCCCCeE---------EEEEEEEeCCCCCCHHHHHHHHHHHHhhh
Q 021895           44 IHVFHCPD-EVGIVAKLSECIASRGGNILAADVFVPEKKNVF---------YSRSEFIFDPIKWPREQMDEDFFKLSKMF  113 (306)
Q Consensus        44 ILTViGpD-RpGIVAaVS~~LAe~G~NIlD~sQ~id~l~G~F---------fMrmeVdv~~~~~~~eeLreaL~~la~el  113 (306)
                      |+|+.|.| +.|+||+||++||++|+||.++++.    .|+|         .|.++++++..+.+.++|+++|.++++++
T Consensus         1 ivtvlg~~~~a~~ia~Vs~~lA~~~~NI~~I~~l----~~~~~~~~~~~~~~~~~e~~v~~~~~~~~~lr~~L~~la~el   76 (84)
T cd04871           1 IVTLLGRPLTAEQLAAVTRVVADQGLNIDRIRRL----SGRVPLEEQDDSPKACVEFSVRGQPADLEALRAALLELASEL   76 (84)
T ss_pred             CEEEEcCcCCHHHHHHHHHHHHHcCCCHHHHHHh----hccccccccCCCCcEEEEEEEeCCCCCHHHHHHHHHHHhccc
Confidence            68999999 9999999999999999999999994    3444         45556655544578999999999999999


Q ss_pred             hcc
Q 021895          114 NAM  116 (306)
Q Consensus       114 gl~  116 (306)
                      |++
T Consensus        77 gvD   79 (84)
T cd04871          77 NVD   79 (84)
T ss_pred             Cce
Confidence            863

The ACT_PSP_2 CD includes the second of the two ACT domains found N-terminal of phosphoserine phosphatase (PSP, SerB). PSPs belong to the L-2-haloacid dehalogenase-like protein superfamily. PSP is involved in serine metabolism; serine is synthesized from phosphoglycerate through sequential reactions catalyzed by 3-phosphoglycerate dehydrogenase (SerA), 3-phosphoserine aminotransferase (SerC), and SerB. Members of this CD belong to the superfamily of ACT regulatory domains

>KOG3082 consensus Methionyl-tRNA formyltransferase [Translation, ribosomal structure and biogenesis]

Probab=98.92  E-value=7.5e-10  Score=106.39  Aligned_cols=118  Identities=20%  Similarity=0.248  Sum_probs=77.3

Q ss_pred             CceEEEEEeCCc--chHHHHHHhhhcCCCCeEEEEEeeCCCCC-------CChhHHHHHHhCCCCEEEeCCCCCChHHHH
Q 021895          128 KYKVAVLASKQE--HCLVDFLYGWQEGKLPVEITCVISNHDRG-------PNSHVIRFLERHGIPYHYLCAKENEREEEL  198 (306)
Q Consensus       128 ~~riavl~S~~g--~~L~~ll~~~~~g~l~~~I~~Visn~~~~-------~~~~~~~~A~~~gIp~~~~~~k~~~~e~e~  198 (306)
                      .+.+-+++|...  .-++.+...       .+.+.+++.++..       ..+|+...|...|.++.-+-.......   
T Consensus         6 ~~nv~~~~sd~~~~~~~~~l~~~-------~~~~~iv~~pp~~~~~~k~~lpsP~a~~a~~k~la~~kl~p~~k~~~---   75 (338)
T KOG3082|consen    6 PLNVIFLGSDEFSIPILRKLIGC-------VQRVRIVSAPPKRQSRRKEILPSPAAMEANAKGLAYIKLQPGWKNFH---   75 (338)
T ss_pred             ccCcchhccccccchhhhhHHHH-------HHhhhhccCCcchhhccCccCCCccccccccccceeeeccChhhccc---
Confidence            345556666543  334444432       3444455544221       124555566666777665542111011   


Q ss_pred             HHHhc-CCcEEEEeccCCCCcCchhhhhhhhhhhhhccCCCccccccccCCHhHHhhcCCCeeEeCCCCCCCCCCCcHHH
Q 021895          199 LELVQ-NTDFLVLARYMQPVPLQKEAYLGYKLLESLSSKGSLTSYFNMILSGKFLRSYGKDVINIHHGLLPSFKGGKPAK  277 (306)
Q Consensus       199 ~~~v~-~~D~vVlA~ym~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~~~l~~~~~~iINiHpsLLP~f~Ga~p~~  277 (306)
                       ++.. +.|++|.|.|++                              +|+.++++.+|+++||+||||||+|||++|++
T Consensus        76 -d~~~~~~~l~ItaSfGr------------------------------llp~kll~~~pyg~iNVHPSLLPk~RGaAPV~  124 (338)
T KOG3082|consen   76 -DLMRPDDQLAITASFGR------------------------------LLPFKLLNQLPYGGINVHPSLLPKYRGAAPVQ  124 (338)
T ss_pred             -cccCCCcceEEEeehhc------------------------------cCcHHHHhhCCcceeecChhhcccccCcchHH
Confidence             2233 789999999999                              99999999999999999999999999999999


Q ss_pred             HHHHHHhhc
Q 021895          278 QVGCFTFCL  286 (306)
Q Consensus       278 ~A~~~~~~l  286 (306)
                      +|+.-.-..
T Consensus       125 ~all~GD~~  133 (338)
T KOG3082|consen  125 RALLNGDTL  133 (338)
T ss_pred             HHHhcCCcc
Confidence            995544333

>PF01842 ACT: ACT domain; InterPro: IPR002912 The ACT domain is found in a variety of contexts and is proposed to be a conserved regulatory binding fold

Probab=98.77  E-value=3.3e-08  Score=71.02  Aligned_cols=64  Identities=20%  Similarity=0.163  Sum_probs=48.1

Q ss_pred             EEEEEEcCCccchHHHHHHHHHhcCCeEeEeeeeccCCC-CeEEEEEEEEeCCCCCCHHHHHHHHHHHH
Q 021895           43 GIHVFHCPDEVGIVAKLSECIASRGGNILAADVFVPEKK-NVFYSRSEFIFDPIKWPREQMDEDFFKLS  110 (306)
Q Consensus        43 ~ILTViGpDRpGIVAaVS~~LAe~G~NIlD~sQ~id~l~-G~FfMrmeVdv~~~~~~~eeLreaL~~la  110 (306)
                      |.|++.|+||||++++|++.|+++|+||..+.+..+... +.+++....+    ..+.+++.++|+++.
T Consensus         1 ~~v~v~~~drpG~l~~v~~~la~~~inI~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~l~~~~   65 (66)
T PF01842_consen    1 YRVRVIVPDRPGILADVTEILADHGINIDSISQSSDKDGVGIVFIVIVVD----EEDLEKLLEELEALP   65 (66)
T ss_dssp             EEEEEEEETSTTHHHHHHHHHHHTTEEEEEEEEEEESSTTEEEEEEEEEE----GHGHHHHHHHHHHHT
T ss_pred             CEEEEEcCCCCCHHHHHHHHHHHcCCCHHHeEEEecCCCceEEEEEEECC----CCCHHHHHHHHHccc
Confidence            578999999999999999999999999999999876442 2233333333    235677777777653

ACT domains are linked to a wide range of metabolic enzymes that are regulated by amino acid concentration. The archetypical ACT domain is the C-terminal regulatory domain of 3-phosphoglycerate dehydrogenase (3PGDH), which folds with a ferredoxin-like topology. A pair of ACT domains form an eight-stranded antiparallel sheet with two molecules of allosteric inhibitor serine bound in the interface. Biochemical exploration of a few other proteins containing ACT domains supports the suggestions that these domains contain the archetypical ACT structure [].; GO: 0016597 amino acid binding, 0008152 metabolic process; PDB: 3L76_B 2F06_B 3NRB_C 1Y7P_C 2QMX_A 2DT9_A 2ZHO_D 3K5P_A 3TVI_K 3C1M_C ....

>COG2716 GcvR Glycine cleavage system regulatory protein [Amino acid transport and metabolism]

Probab=98.65  E-value=3.4e-08  Score=88.39  Aligned_cols=71  Identities=15%  Similarity=0.062  Sum_probs=62.6

Q ss_pred             cEEEEEEcCCccchHHHHHHHHHhcCCeEeEeeeeccCCCCeEEEEEEEEeCCCCCCHHHHHHHHHHHHhhhhcc
Q 021895           42 HGIHVFHCPDEVGIVAKLSECIASRGGNILAADVFVPEKKNVFYSRSEFIFDPIKWPREQMDEDFFKLSKMFNAM  116 (306)
Q Consensus        42 k~ILTViGpDRpGIVAaVS~~LAe~G~NIlD~sQ~id~l~G~FfMrmeVdv~~~~~~~eeLreaL~~la~elgl~  116 (306)
                      .+|||++|+||||+|-.+++.++++||||++++..  ..++.|+.++.+..+.+  ..+.|++.|..+.++.|+.
T Consensus         5 ~LvItavg~d~pgl~~~lar~v~s~Gcn~leSRla--~~g~~~a~i~lisgs~d--av~~le~~l~~l~~~~~L~   75 (176)
T COG2716           5 YLVITAVGADRPGLVNTLARAVASSGCNWLESRLA--MLGEEFAGIMLISGSWD--AVTLLEATLPLLGAELDLL   75 (176)
T ss_pred             EEEEEEecCCCcHHHHHHHHHHHhcCCcchHHHHH--HhhcceeEEEEEeeCHH--HHHHHHHHhhcccccCCeE
Confidence            38999999999999999999999999999999885  34788888888887654  5799999999999998863

>cd04925 ACT_ACR_2 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein)

Probab=98.46  E-value=7.7e-07  Score=67.98  Aligned_cols=46  Identities=11%  Similarity=0.107  Sum_probs=41.8

Q ss_pred             EEEEEcCCccchHHHHHHHHHhcCCeEeEeeeeccCCCCeEEEEEEEE
Q 021895           44 IHVFHCPDEVGIVAKLSECIASRGGNILAADVFVPEKKNVFYSRSEFI   91 (306)
Q Consensus        44 ILTViGpDRpGIVAaVS~~LAe~G~NIlD~sQ~id~l~G~FfMrmeVd   91 (306)
                      |+.+.|+||||++++|++.|+++||||.+.+.+..  +|++...+.|.
T Consensus         2 ~~~v~~~Dr~gLl~~i~~~l~~~~lnI~~A~i~t~--~~~~~d~f~V~   47 (74)
T cd04925           2 AIELTGTDRPGLLSEVFAVLADLHCNVVEARAWTH--NGRLACVIYVR   47 (74)
T ss_pred             EEEEEECCCCCHHHHHHHHHHHCCCcEEEEEEEEE--CCEEEEEEEEE
Confidence            78999999999999999999999999999998854  78888888875

This CD includes the second ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products have been described (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) and are represented in this CD. Members of this CD belong to the superfamily of ACT regulatory domains.

>COG2716 GcvR Glycine cleavage system regulatory protein [Amino acid transport and metabolism]

Probab=98.27  E-value=2.1e-06  Score=76.98  Aligned_cols=77  Identities=14%  Similarity=0.102  Sum_probs=64.7

Q ss_pred             CcccEEEEEEcCCccchHHHHHHHHHhcCCeEeEeeeec----cCCCCeEEEEEEEEeCCCCCCHHHHHHHHHHHHhhhh
Q 021895           39 TLTHGIHVFHCPDEVGIVAKLSECIASRGGNILAADVFV----PEKKNVFYSRSEFIFDPIKWPREQMDEDFFKLSKMFN  114 (306)
Q Consensus        39 ~~~k~ILTViGpDRpGIVAaVS~~LAe~G~NIlD~sQ~i----d~l~G~FfMrmeVdv~~~~~~~eeLreaL~~la~elg  114 (306)
                      ....|.+.|.+.||||||.++|+++.+||+||++++...    ...+..|..-+-+.+|. +...+.|+++|++++.+++
T Consensus        89 ~~~~v~v~v~a~DrpgIv~~~T~lf~~~~inie~L~~~~~~a~~s~~~lfha~it~~lPa-~~~i~~l~~~f~al~~~L~  167 (176)
T COG2716          89 NPAPVWVYVDANDRPGIVEEFTALFDGHGINIENLVSRTYPAPGSSAPLFHAQITARLPA-NLSISALRDAFEALCDELN  167 (176)
T ss_pred             CCceEEEEEEecCCccHHHHHHHHHHhcCCchhhceeeeeecCCCCccceehhhhccCCC-cCcHHHHHHHHHHHHHhhc
Confidence            345689999999999999999999999999999976643    12345688778788875 7899999999999999998


Q ss_pred             cc
Q 021895          115 AM  116 (306)
Q Consensus       115 l~  116 (306)
                      +.
T Consensus       168 v~  169 (176)
T COG2716         168 VD  169 (176)
T ss_pred             ce
Confidence            63

>PF13291 ACT_4: ACT domain; PDB: 2KO1_B 3IBW_A

Probab=98.20  E-value=8.7e-06  Score=61.99  Aligned_cols=67  Identities=15%  Similarity=0.118  Sum_probs=51.6

Q ss_pred             cccEEEEEEcCCccchHHHHHHHHHhcCCeEeEeeeeccCCCCeEEEEEEEEeCCCCCCHHHHHHHHHHHH
Q 021895           40 LTHGIHVFHCPDEVGIVAKLSECIASRGGNILAADVFVPEKKNVFYSRSEFIFDPIKWPREQMDEDFFKLS  110 (306)
Q Consensus        40 ~~k~ILTViGpDRpGIVAaVS~~LAe~G~NIlD~sQ~id~l~G~FfMrmeVdv~~~~~~~eeLreaL~~la  110 (306)
                      ..++-|.+.|.||+|+++.|++.+++.|+||.+++.......+.+.+.+.+++.    +.++|..-++++-
T Consensus         4 ~f~~~l~i~~~dr~GlL~dI~~~i~~~~~nI~~i~~~~~~~~~~~~~~l~v~V~----d~~~L~~ii~~L~   70 (80)
T PF13291_consen    4 SFPVRLRIEAEDRPGLLADITSVISENGVNIRSINARTNKDDGTARITLTVEVK----DLEHLNQIIRKLR   70 (80)
T ss_dssp             -EEEEEEEEEE--TTHHHHHHHHHHCSSSEEEEEEEEE--ETTEEEEEEEEEES----SHHHHHHHHHHHC
T ss_pred             EEEEEEEEEEEcCCCHHHHHHHHHHHCCCCeEEEEeEEeccCCEEEEEEEEEEC----CHHHHHHHHHHHH
Confidence            445788999999999999999999999999999999764336888899999986    3566666666543

>cd04873 ACT_UUR-ACR-like ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD

Probab=98.10  E-value=2.4e-05  Score=56.68  Aligned_cols=49  Identities=18%  Similarity=0.168  Sum_probs=40.3

Q ss_pred             EEEEEcCCccchHHHHHHHHHhcCCeEeEeeeeccCCCCeEEEEEEEEeCC
Q 021895           44 IHVFHCPDEVGIVAKLSECIASRGGNILAADVFVPEKKNVFYSRSEFIFDP   94 (306)
Q Consensus        44 ILTViGpDRpGIVAaVS~~LAe~G~NIlD~sQ~id~l~G~FfMrmeVdv~~   94 (306)
                      .|++.|+|++|+++.+++.|+++|+||.++.++..  .+....++.++.++
T Consensus         2 ~l~i~~~d~~g~l~~i~~~l~~~~~~I~~~~~~~~--~~~~~~~~~v~~~~   50 (70)
T cd04873           2 VVEVYAPDRPGLLADITRVLADLGLNIHDARISTT--GERALDVFYVTDSD   50 (70)
T ss_pred             EEEEEeCCCCCHHHHHHHHHHHCCCeEEEEEEeec--CCEEEEEEEEECCC
Confidence            57899999999999999999999999999998754  33555666666543

This ACT domain family, ACT_UUR_ACR-like, includes the two C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD; including those enzymes similar to the GlnD found in enteric Escherichia coli and those found in photosynthetic, nitrogen-fixing bacterium Rhodospirillum rubrum. Also included in this CD are the four ACT domains of a novel protein composed almost entirely of ACT domain repeats (the ACR protein) and like proteins. These ACR proteins, found in Arabidopsis and Oryza, are proposed to function as novel regulatory or sensor proteins in plants. This CD also includes the first of the two ACT domains that comprise the Glycine Cleavage System Transcriptional Repressor (GcvR) protein and related domains, as well as, the N-terminal ACT domain of a yet characterized Arabidopsis/Oryza predicted t

>CHL00100 ilvH acetohydroxyacid synthase small subunit

Probab=98.06  E-value=1.2e-05  Score=72.08  Aligned_cols=73  Identities=21%  Similarity=0.231  Sum_probs=57.4

Q ss_pred             ccEEEEEEcCCccchHHHHHHHHHhcCCeEeEeeeeccCCCCeEEEEEEEEeCCCCCCHHHHHHHHHHHHhhhhc
Q 021895           41 THGIHVFHCPDEVGIVAKLSECIASRGGNILAADVFVPEKKNVFYSRSEFIFDPIKWPREQMDEDFFKLSKMFNA  115 (306)
Q Consensus        41 ~k~ILTViGpDRpGIVAaVS~~LAe~G~NIlD~sQ~id~l~G~FfMrmeVdv~~~~~~~eeLreaL~~la~elgl  115 (306)
                      |+.++++.+.|+||+++.||++++++|.||.+++.......|.--|.+.  +++.....+++++.|++++..+.+
T Consensus         1 m~~~isvlv~n~PGVL~RIt~lFsrRg~NIesLsv~~t~~~~~sr~TIv--v~~~~~~ieqL~kQL~KLidVl~V   73 (174)
T CHL00100          1 MKHTLSVLVEDESGVLTRIAGLFARRGFNIESLAVGPAEQKGISRITMV--VPGDDRTIEQLTKQLYKLVNILKV   73 (174)
T ss_pred             CeEEEEEEEeCcCCHHHHHHHHHHhCCCCeeEEEeeEcCCCCccEEEEE--EECCHHHHHHHHHHHHHHhHhhEE
Confidence            4789999999999999999999999999999998865444555444444  444322388999999999888764

>PRK08577 hypothetical protein; Provisional

Probab=98.06  E-value=2.5e-05  Score=66.07  Aligned_cols=75  Identities=19%  Similarity=0.166  Sum_probs=57.7

Q ss_pred             CCCCCcccEEEEEEcCCccchHHHHHHHHHhcCCeEeEeeeeccCCCCeEEEEEEEEeCCCCCCHHHHHHHHHHH
Q 021895           35 SVSPTLTHGIHVFHCPDEVGIVAKLSECIASRGGNILAADVFVPEKKNVFYSRSEFIFDPIKWPREQMDEDFFKL  109 (306)
Q Consensus        35 ~~~p~~~k~ILTViGpDRpGIVAaVS~~LAe~G~NIlD~sQ~id~l~G~FfMrmeVdv~~~~~~~eeLreaL~~l  109 (306)
                      -..+....+-|++.+.|++|+++.|++.|+++|+||.++++.....++.+.+.+.+++++.....+++.+.|+++
T Consensus        49 ~~~~~k~~~~I~V~~~Dr~GvLa~I~~~l~~~~inI~~i~~~~~~~~~~~~i~l~vev~~~~~~l~~l~~~L~~l  123 (136)
T PRK08577         49 IALPGKKLVEIELVVEDRPGVLAKITGLLAEHGVDILATECEELKRGELAECVIIVDLSKSDIDLEELEEELKKL  123 (136)
T ss_pred             cCCCCccEEEEEEEEcCCCCHHHHHHHHHHHCCCCEEEEEEEEecCCCEEEEEEEEEeCCchhhHHHHHHHHHcC
Confidence            344556689999999999999999999999999999998875443356677888888875323456666666553

>cd04886 ACT_ThrD-II-like C-terminal ACT domain of biodegradative (catabolic) threonine dehydratase II (ThrD-II) and other related ACT domains

Probab=97.97  E-value=3e-05  Score=55.70  Aligned_cols=49  Identities=22%  Similarity=0.134  Sum_probs=37.8

Q ss_pred             EEEEcCCccchHHHHHHHHHhcCCeEeEeeeeccC---CCCeEEEEEEEEeC
Q 021895           45 HVFHCPDEVGIVAKLSECIASRGGNILAADVFVPE---KKNVFYSRSEFIFD   93 (306)
Q Consensus        45 LTViGpDRpGIVAaVS~~LAe~G~NIlD~sQ~id~---l~G~FfMrmeVdv~   93 (306)
                      +.+.++|+||.+++|++.++++|+||.++++....   ..+...+.+.+++.
T Consensus         1 ~~v~~~d~~G~L~~i~~~i~~~~~nI~~i~~~~~~~~~~~~~~~~~i~v~~~   52 (73)
T cd04886           1 LRVELPDRPGQLAKLLAVIAEAGANIIEVSHDRAFKTLPLGEVEVELTLETR   52 (73)
T ss_pred             CEEEeCCCCChHHHHHHHHHHcCCCEEEEEEEeccCCCCCceEEEEEEEEeC
Confidence            35788999999999999999999999999875432   23555555666653

This CD includes the C-terminal ACT domain of biodegradative (catabolic) threonine dehydratase II (ThrD-II) and other related ACT domains. The Escherichia coli tdcB gene product, ThrD-II, anaerobically catalyzes the pyridoxal phosphate-dependent dehydration of L-threonine and L-serine to ammonia and to alpha-ketobutyrate and pyruvate, respectively. Tetrameric ThrD-II is subject to allosteric activation by AMP, inhibition by alpha-keto acids, and catabolite inactivation by several metabolites of glycolysis and the citric acid cycle. Also included in this CD are N-terminal ACT domains present in smaller (~170 a.a.) archaeal proteins of unknown function. Members of this CD belong to the superfamily of ACT regulatory domains.

>cd04888 ACT_PheB-BS C-terminal ACT domain of a small (~147 a

Probab=97.94  E-value=3.8e-05  Score=57.03  Aligned_cols=50  Identities=16%  Similarity=0.167  Sum_probs=42.0

Q ss_pred             EEEEEcCCccchHHHHHHHHHhcCCeEeEeeeeccCCCCeEEEEEEEEeCC
Q 021895           44 IHVFHCPDEVGIVAKLSECIASRGGNILAADVFVPEKKNVFYSRSEFIFDP   94 (306)
Q Consensus        44 ILTViGpDRpGIVAaVS~~LAe~G~NIlD~sQ~id~l~G~FfMrmeVdv~~   94 (306)
                      -+.+.++|++|+.++|++.|+++|+||..+++... ..|.+.+.+.++..+
T Consensus         2 ~l~i~~~d~~g~l~~I~~~la~~~inI~~i~~~~~-~~~~~~i~~~v~v~~   51 (76)
T cd04888           2 TLSLLLEHRPGVLSKVLNTIAQVRGNVLTINQNIP-IHGRANVTISIDTST   51 (76)
T ss_pred             EEEEEecCCCchHHHHHHHHHHcCCCEEEEEeCCC-CCCeEEEEEEEEcCc
Confidence            36889999999999999999999999999998542 247788888887654

a.) putative phenylalanine biosynthetic pathway protein described in Bacillus subtilis (BS) PheB (PheB-BS) and related domains. This CD includes the C-terminal ACT domain of a small (~147 a.a.) putative phenylalanine biosynthetic pathway protein described in Bacillus subtilis (BS) PheB (PheB-BS) and other related ACT domains. In B. subtilis, the upstream gene of pheB, pheA encodes prephenate dehydratase (PDT). The presumed product of the pheB gene is chorismate mutase (CM). The deduced product of the B. subtilis pheB gene, however, has no significant homology to the CM portion of the bifunctional CM-PDT of Escherichia coli. The presence of an ACT domain lends support to the prediction that these proteins function as a phenylalanine-binding regulatory protein. Members of this CD belong to the superfamily of ACT regulatory domains.

>cd04899 ACT_ACR-UUR-like_2 C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD and related domains

Probab=97.90  E-value=0.00015  Score=53.19  Aligned_cols=48  Identities=17%  Similarity=0.104  Sum_probs=39.6

Q ss_pred             EEEEEcCCccchHHHHHHHHHhcCCeEeEeeeeccCCCCeEEEEEEEEeC
Q 021895           44 IHVFHCPDEVGIVAKLSECIASRGGNILAADVFVPEKKNVFYSRSEFIFD   93 (306)
Q Consensus        44 ILTViGpDRpGIVAaVS~~LAe~G~NIlD~sQ~id~l~G~FfMrmeVdv~   93 (306)
                      +++|.|+||+|+++.+++.|+++|+||.+++....  .+.....+.+..+
T Consensus         2 ~l~v~~~d~~gll~~i~~~l~~~~~~I~~~~~~~~--~~~~~~~f~i~~~   49 (70)
T cd04899           2 VLELTALDRPGLLADVTRVLAELGLNIHSAKIATL--GERAEDVFYVTDA   49 (70)
T ss_pred             EEEEEEcCCccHHHHHHHHHHHCCCeEEEEEEEec--CCEEEEEEEEECC
Confidence            68899999999999999999999999999998644  4555556666543

This ACT domain family, ACT_ACR-UUR-like_2, includes the second of two C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD; including those enzymes similar to the GlnD found in enteric Escherichia coli and those found in photosynthetic, nitrogen-fixing bacterium Rhodospirillum rubrum. Also included in this CD are the second and fourth ACT domains of a novel protein composed almost entirely of ACT domain repeats, the ACR protein. These ACR proteins, found in Arabidopsis and Oryza, are proposed to function as novel regulatory or sensor proteins in plants. Members of this CD belong to the superfamily of ACT regulatory domains.

>cd04928 ACT_TyrKc Uncharacterized, N-terminal ACT domain of an Arabidopsis/Oryza predicted tyrosine kinase and other related ACT domains

Probab=97.82  E-value=0.00015  Score=56.01  Aligned_cols=64  Identities=16%  Similarity=0.107  Sum_probs=47.5

Q ss_pred             EEEEEEcCCccchHHHHHHHHHhcCCeEeEeeeeccCCCCeEEEEEEEEeCCCCCCHHHHHHHHHH
Q 021895           43 GIHVFHCPDEVGIVAKLSECIASRGGNILAADVFVPEKKNVFYSRSEFIFDPIKWPREQMDEDFFK  108 (306)
Q Consensus        43 ~ILTViGpDRpGIVAaVS~~LAe~G~NIlD~sQ~id~l~G~FfMrmeVdv~~~~~~~eeLreaL~~  108 (306)
                      +-|+|.++||+|+.+++++.|+.+|.||.+.+-+... .|+-.=.+.|.-. ...+.++|++++++
T Consensus         2 ~eI~V~~~Dr~gLFa~iag~L~~~~LnI~~A~i~tt~-dG~~LDtF~V~d~-~~~~~~~~~~~~~~   65 (68)
T cd04928           2 HEITFAAGDKPKLLSQLSSLLGDLGLNIAEAHAFSTD-DGLALDIFVVTGW-KRGETAALGHALQK   65 (68)
T ss_pred             EEEEEEECCCcchHHHHHHHHHHCCCceEEEEEEEcC-CCeEEEEEEEecC-CccchHHHHHHHHH
Confidence            3578999999999999999999999999999888653 4553323334322 23466788888765

This CD includes a novel, yet uncharacterized, N-terminal ACT domain of an Arabidopsis/Oryza predicted tyrosine kinase and other related ACT domains. Members of this CD belong to the superfamily of ACT regulatory domains.

>cd04874 ACT_Af1403 N-terminal ACT domain of the yet uncharacterized, small (~133 a

Probab=97.81  E-value=0.00013  Score=52.49  Aligned_cols=61  Identities=21%  Similarity=0.279  Sum_probs=44.5

Q ss_pred             EEEEEcCCccchHHHHHHHHHhcCCeEeEeeeeccCCCCeEEEEEEEEeCCCCCCHHHHHHHHHH
Q 021895           44 IHVFHCPDEVGIVAKLSECIASRGGNILAADVFVPEKKNVFYSRSEFIFDPIKWPREQMDEDFFK  108 (306)
Q Consensus        44 ILTViGpDRpGIVAaVS~~LAe~G~NIlD~sQ~id~l~G~FfMrmeVdv~~~~~~~eeLreaL~~  108 (306)
                      .+++.++|++|+++.+++.|+++|+||.++.+... ..+.+.+.+.++  +. ...+++.+.|++
T Consensus         2 ~l~i~~~d~~g~l~~i~~~l~~~~~~i~~~~~~~~-~~~~~~~~i~~~--~~-~~~~~~~~~L~~   62 (72)
T cd04874           2 ALSIIAEDKPGVLRDLTGVIAEHGGNITYTQQFIE-REGKARIYMELE--GV-GDIEELVEELRS   62 (72)
T ss_pred             eEEEEeCCCCChHHHHHHHHHhCCCCEEEEEEecc-CCCeEEEEEEEe--cc-ccHHHHHHHHhC
Confidence            57899999999999999999999999999988643 245555555554  21 234455555554

a.), putative amino acid binding protein, Af1403, and related domains. This CD includes the N-terminal ACT domain of the yet uncharacterized, small (~133 a.a.), putative amino acid binding protein, Af1403, from Archaeoglobus fulgidus and other related archeal ACT domains. Members of this CD belong to the superfamily of ACT regulatory domains.

>PRK03381 PII uridylyl-transferase; Provisional

Probab=97.81  E-value=7.6e-05  Score=79.54  Aligned_cols=70  Identities=13%  Similarity=-0.019  Sum_probs=56.9

Q ss_pred             cccEEEEEEcCCccchHHHHHHHHHhcCCeEeEeeeeccCCCCeEEEEEEEEeCCCC-CCHHHHHHHHHHHHh
Q 021895           40 LTHGIHVFHCPDEVGIVAKLSECIASRGGNILAADVFVPEKKNVFYSRSEFIFDPIK-WPREQMDEDFFKLSK  111 (306)
Q Consensus        40 ~~k~ILTViGpDRpGIVAaVS~~LAe~G~NIlD~sQ~id~l~G~FfMrmeVdv~~~~-~~~eeLreaL~~la~  111 (306)
                      .....|+|.|+||||++|.|+++|+.+|+||++.+.++  .+|++...+.|.-+... ...++++++|.+...
T Consensus       597 ~~~~~V~V~~~DrpGLfa~i~~vL~~~glnI~dA~i~t--~dg~~ld~F~V~~~~~~~~~~~~l~~~L~~~L~  667 (774)
T PRK03381        597 PHMVEVTVVAPDRRGLLSKAAGVLALHRLRVRSASVRS--HDGVAVLEFVVSPRFGSPPDAALLRQDLRRALD  667 (774)
T ss_pred             CCeEEEEEEecCCccHHHHHHHHHHHCCCeEEEeEEEe--cCCEEEEEEEEECCCCCcchHHHHHHHHHHHHc
Confidence            56678999999999999999999999999999999986  57898888888743322 335778888877643

>cd04881 ACT_HSDH-Hom ACT_HSDH_Hom CD includes the C-terminal ACT domain of the NAD(P)H-dependent, homoserine dehydrogenase (HSDH) and related domains

Probab=97.80  E-value=0.00017  Score=52.46  Aligned_cols=65  Identities=11%  Similarity=0.039  Sum_probs=48.4

Q ss_pred             EEEEEEcCCccchHHHHHHHHHhcCCeEeEeeeeccCCCCeEEEEEEEEeCCCCCCHHHHHHHHHHHHh
Q 021895           43 GIHVFHCPDEVGIVAKLSECIASRGGNILAADVFVPEKKNVFYSRSEFIFDPIKWPREQMDEDFFKLSK  111 (306)
Q Consensus        43 ~ILTViGpDRpGIVAaVS~~LAe~G~NIlD~sQ~id~l~G~FfMrmeVdv~~~~~~~eeLreaL~~la~  111 (306)
                      |.|.+.+.|++|+++.+++.++++|+||..+.+.....++...+.+.++..    +.+++++.++++.+
T Consensus         1 ~yl~i~~~d~~g~l~~i~~~l~~~~i~I~~~~~~~~~~~~~~~~~i~~~~~----~~~~l~~~i~~L~~   65 (79)
T cd04881           1 YYLRLTVKDKPGVLAKITGILAEHGISIESVIQKEADGGETAPVVIVTHET----SEAALNAALAEIEA   65 (79)
T ss_pred             CEEEEEeCCCCcHHHHHHHHHHHcCCCeEEEEEcccCCCCceeEEEEEccC----CHHHHHHHHHHHHc
Confidence            457899999999999999999999999999987533222555566666532    56777777766543

The ACT_HSDH_Hom CD includes the C-terminal ACT domain of the NAD(P)H-dependent, homoserine dehydrogenase (HSDH) encoded by the hom gene of Bacillus subtilis and other related sequences. HSDH reduces aspartate semi-aldehyde to the amino acid homoserine, one that is required for the biosynthesis of Met, Thr, and Ile from Asp. Neither the enzyme nor the aspartate pathway is found in the animal kingdom. This mostly bacterial HSDH group has a C-terminal ACT domain and is believed to be involved in enzyme regulation. A C-terminal deletion in the Corynebacterium glutamicum HSDH abolished allosteric inhibition by L-threonine. Members of this CD belong to the superfamily of ACT regulatory domains.

>cd04887 ACT_MalLac-Enz ACT_MalLac-Enz CD includes the N-terminal ACT domain of putative NAD-dependent malic enzyme 1, Bacillus subtilis YqkI and related domains

Probab=97.80  E-value=0.00019  Score=53.25  Aligned_cols=62  Identities=15%  Similarity=0.222  Sum_probs=48.3

Q ss_pred             EEEEcCCccchHHHHHHHHHhcCCeEeEeeeeccCCCCeEEEEEEEEeCCCCCCHHHHHHHHHHHHh
Q 021895           45 HVFHCPDEVGIVAKLSECIASRGGNILAADVFVPEKKNVFYSRSEFIFDPIKWPREQMDEDFFKLSK  111 (306)
Q Consensus        45 LTViGpDRpGIVAaVS~~LAe~G~NIlD~sQ~id~l~G~FfMrmeVdv~~~~~~~eeLreaL~~la~  111 (306)
                      |.+.++||+|+++.|++.+++.|+||.+++.... ..|...+.+.+++.    +.++|.+-++++.+
T Consensus         2 l~v~~~d~~g~L~~i~~~i~~~~~nI~~v~~~~~-~~~~~~~~~~vev~----~~~~l~~i~~~L~~   63 (74)
T cd04887           2 LRLELPNRPGMLGRVTTAIGEAGGDIGAIDLVEQ-GRDYTVRDITVDAP----SEEHAETIVAAVRA   63 (74)
T ss_pred             EEEEeCCCCchHHHHHHHHHHcCCcEEEEEEEEe-cCCEEEEEEEEEcC----CHHHHHHHHHHHhc
Confidence            6788999999999999999999999999887532 24777777777765    35666666665543

The ACT_MalLac-Enz CD includes the N-terminal ACT domain of putative NAD-dependent malic enzyme 1, Bacillus subtilis YqkI, a malolactic enzyme (MalLac-Enz) which converts malate to lactate, and other related ACT domains. The yqkJ product is predicted to convert malate directly to lactate, as opposed to related malic enzymes that convert malate to pyruvate. Members of this CD belong to the superfamily of ACT regulatory domains.

>cd04909 ACT_PDH-BS C-terminal ACT domain of the monofunctional, NAD dependent, prephenate dehydrogenase (PDH)

Probab=97.79  E-value=7.7e-05  Score=54.90  Aligned_cols=63  Identities=19%  Similarity=0.190  Sum_probs=43.6

Q ss_pred             EEEEEEcCCccchHHHHHHHHHhcCCeEeEeeeeccCCCCeEEEEEEEEeCCCCCCHHHHHHHHHH
Q 021895           43 GIHVFHCPDEVGIVAKLSECIASRGGNILAADVFVPEKKNVFYSRSEFIFDPIKWPREQMDEDFFK  108 (306)
Q Consensus        43 ~ILTViGpDRpGIVAaVS~~LAe~G~NIlD~sQ~id~l~G~FfMrmeVdv~~~~~~~eeLreaL~~  108 (306)
                      +.+++..+|+||.++++++.++++|+||..+.+......+.-.+++.++.++   +.+.+.+.|++
T Consensus         2 ~~~~v~~~d~~G~L~~l~~~l~~~~i~i~~~~~~~~~~~~~~~~~i~v~~~~---~~~~~~~~L~~   64 (69)
T cd04909           2 YDLYVDVPDEPGVIAEVTQILGDAGISIKNIEILEIREGIGGILRISFKTQE---DRERAKEILKE   64 (69)
T ss_pred             EEEEEEcCCCCCHHHHHHHHHHHcCCCceeeEeEEeecCCcEEEEEEECCHH---HHHHHHHHHHH
Confidence            5688999999999999999999999999998765432111222345554321   45566666654

The C-terminal ACT domain of the monofunctional, NAD dependent, prephenate dehydrogenase (PDH) enzyme that catalyzes the formation of 4-hydroxyphenylpyruvate from prephenate, found in Bacillus subtilis (BS) and other Firmicutes, Deinococci, and Bacteroidetes. PDH is the first enzyme in the aromatic amino acid pathway specific for the biosynthesis of tyrosine. This enzyme is feedback-inhibited by tyrosine in B. subtilis and other microorganisms. Both phenylalanine and tryptophan have been shown to be inhibitors of this activity in B. subtilis. Bifunctional chorismate mutase-PDH (TyrA) enzymes such as those seen in Escherichia coli do not contain an ACT domain. Members of this CD belong to the superfamily of ACT regulatory domains.

>cd04902 ACT_3PGDH-xct C-terminal ACT (regulatory) domain of D-3-phosphoglycerate dehydrogenase (3PGDH)

Probab=97.79  E-value=7.2e-05  Score=54.82  Aligned_cols=60  Identities=17%  Similarity=0.100  Sum_probs=44.7

Q ss_pred             EEEEcCCccchHHHHHHHHHhcCCeEeEeeeeccCCCCeEEEEEEEEeCCCCCCHHHHHHHHHH
Q 021895           45 HVFHCPDEVGIVAKLSECIASRGGNILAADVFVPEKKNVFYSRSEFIFDPIKWPREQMDEDFFK  108 (306)
Q Consensus        45 LTViGpDRpGIVAaVS~~LAe~G~NIlD~sQ~id~l~G~FfMrmeVdv~~~~~~~eeLreaL~~  108 (306)
                      +++.++|++|+++.|++.|+++|+||.++.-.....++...+++.++.+    ..+++.++|++
T Consensus         2 l~v~~~d~~G~l~~i~~~l~~~~inI~~~~~~~~~~~~~~~~~i~v~~~----~~~~~~~~l~~   61 (73)
T cd04902           2 LVVRNTDRPGVIGKVGTILGEAGINIAGMQVGRDEPGGEALMVLSVDEP----VPDEVLEELRA   61 (73)
T ss_pred             EEEEeCCCCCHHHHHHHHHHHcCcChhheEeeccCCCCEEEEEEEeCCC----CCHHHHHHHHc
Confidence            5779999999999999999999999998865433245667777777642    23466666654

The C-terminal ACT (regulatory) domain of D-3-phosphoglycerate dehydrogenase (3PGDH), with an extended C-terminal (xct) region from bacteria, archaea, fungi, and plants. 3PGDH is an enzyme that belongs to the D-isomer specific, 2-hydroxyacid dehydrogenase family and catalyzes the oxidation of D-3-phosphoglycerate to 3- phosphohydroxypyruvate, which is the first step in the biosynthesis of L-serine, using NAD+ as the oxidizing agent. In bacteria, 3PGDH is feedback-controlled by the end product L-serine in an allosteric manner. Some 3PGDH enzymes have an additional domain formed by an extended C-terminal region. This additional domain introduces significant asymmetry to the homotetramer. Adjacent ACT (regulatory) domains interact, creating two serine-binding sites, however, this asymmetric arrangement results in the formation of two different and distinct domain interfaces between iden

>cd04878 ACT_AHAS N-terminal ACT domain of the Escherichia coli IlvH-like regulatory subunit of acetohydroxyacid synthase (AHAS)

Probab=97.72  E-value=0.00014  Score=51.98  Aligned_cols=62  Identities=21%  Similarity=0.088  Sum_probs=45.1

Q ss_pred             EEEEEcCCccchHHHHHHHHHhcCCeEeEeeeeccCCCCeEEEEEEEEeCCCCCCHHHHHHHHH
Q 021895           44 IHVFHCPDEVGIVAKLSECIASRGGNILAADVFVPEKKNVFYSRSEFIFDPIKWPREQMDEDFF  107 (306)
Q Consensus        44 ILTViGpDRpGIVAaVS~~LAe~G~NIlD~sQ~id~l~G~FfMrmeVdv~~~~~~~eeLreaL~  107 (306)
                      .|.+.+.|++|+++.+++.++++|+||..+.+.....++...+.+.++..+  ...+++.+.|+
T Consensus         2 ~l~i~~~d~~g~l~~i~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~l~~~l~   63 (72)
T cd04878           2 TLSVLVENEPGVLNRISGLFARRGFNIESLTVGPTEDPGISRITIVVEGDD--DVIEQIVKQLN   63 (72)
T ss_pred             EEEEEEcCCCcHHHHHHHHHHhCCCCEEEEEeeecCCCCeEEEEEEEECCH--HHHHHHHHHHh
Confidence            367889999999999999999999999999886432356666777776431  23444444444

ACT_AHAS: N-terminal ACT domain of the Escherichia coli IlvH-like regulatory subunit of acetohydroxyacid synthase (AHAS). AHAS catalyses the first common step in the biosynthesis of the three branched-chain amino acids. The first step involves the condensation of either pyruvate or 2-ketobutyrate with the two-carbon hydroxyethyl fragment derived from another pyruvate molecule, covalently bound to the coenzyme thiamine diphosphate. Bacterial AHASs generally consist of regulatory and catalytic subunits. The effector (valine) binding sites are proposed to be located in two symmetrically related positions in the interface between a pair of N-terminal ACT domains with the C-terminal domain of IlvH contacting the catalytic dimer. Plants Arabidopsis and Oryza have tandem IlvH subunits; both the first and second ACT domain sequences are present in this CD. Members of

>cd04927 ACT_ACR-like_2 Second ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein)

Probab=97.70  E-value=0.0004  Score=53.51  Aligned_cols=35  Identities=17%  Similarity=0.237  Sum_probs=32.4

Q ss_pred             EEEEEEcCCccchHHHHHHHHHhcCCeEeEeeeec
Q 021895           43 GIHVFHCPDEVGIVAKLSECIASRGGNILAADVFV   77 (306)
Q Consensus        43 ~ILTViGpDRpGIVAaVS~~LAe~G~NIlD~sQ~i   77 (306)
                      +++.+.|+||+|+.|++++.|+++|+||.+.+-++
T Consensus         1 ~~~ei~~~Dr~gLfa~i~~~l~~~~l~I~~A~I~T   35 (76)
T cd04927           1 FLLKLFCSDRKGLLHDVTEVLYELELTIERVKVST   35 (76)
T ss_pred             CEEEEEECCCCCHHHHHHHHHHHCCCeEEEEEEEE
Confidence            36899999999999999999999999999988875

This CD includes the second ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) have been described, however, the ACR-like sequences in this CD are distinct from those characterized. This CD includes the Oryza sativa ACR-like protein (Os05g0113000) encoded on chromosome 5 and the Arabidopsis thaliana predicted gene product, At2g39570. Members of this CD belong to the superfamily of ACT regulatory domains.

>cd04900 ACT_UUR-like_1 ACT domain family, ACT_UUR-like_1, includes the first of two C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD and related domains

Probab=97.68  E-value=0.0004  Score=52.45  Aligned_cols=47  Identities=21%  Similarity=0.342  Sum_probs=37.4

Q ss_pred             EEEEEcCCccchHHHHHHHHHhcCCeEeEeeeeccCCCCeEEEEEEEE
Q 021895           44 IHVFHCPDEVGIVAKLSECIASRGGNILAADVFVPEKKNVFYSRSEFI   91 (306)
Q Consensus        44 ILTViGpDRpGIVAaVS~~LAe~G~NIlD~sQ~id~l~G~FfMrmeVd   91 (306)
                      .+.|.|+||+|+.++|++.|+++|+||.+.+-++. .+|+-.-.+.|.
T Consensus         3 ~i~v~~~Dr~gLl~~i~~~l~~~~l~I~~A~i~T~-~~~~v~D~F~v~   49 (73)
T cd04900           3 EVFIYTPDRPGLFARIAGALDQLGLNILDARIFTT-RDGYALDTFVVL   49 (73)
T ss_pred             EEEEEecCCCCHHHHHHHHHHHCCCCeEEeEEEEe-CCCeEEEEEEEE
Confidence            57899999999999999999999999999887644 235544455554

This ACT domain family, ACT_UUR-like_1, includes the first of two C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD; including those enzymes similar to the GlnD found in enteric Escherichia coli and those found in photosynthetic, nitrogen-fixing bacterium Rhodospirillum rubrum. Also included in this CD is the N-terminal ACT domain of a yet characterized Arabidopsis/Oryza predicted tyrosine kinase. Members of this CD belong to the superfamily of ACT regulatory domains.

>cd04876 ACT_RelA-SpoT ACT domain found C-terminal of the RelA/SpoT domains

Probab=97.65  E-value=0.00018  Score=49.44  Aligned_cols=49  Identities=18%  Similarity=0.183  Sum_probs=39.1

Q ss_pred             EEEEcCCccchHHHHHHHHHhcCCeEeEeeeeccCCCCeEEEEEEEEeCC
Q 021895           45 HVFHCPDEVGIVAKLSECIASRGGNILAADVFVPEKKNVFYSRSEFIFDP   94 (306)
Q Consensus        45 LTViGpDRpGIVAaVS~~LAe~G~NIlD~sQ~id~l~G~FfMrmeVdv~~   94 (306)
                      |.+.++|++|+++.+++.++++++||.++.+... ..+...+.+.++.+.
T Consensus         1 l~v~~~~~~~~l~~i~~~l~~~~~~i~~~~~~~~-~~~~~~~~~~~~~~~   49 (71)
T cd04876           1 IRVEAIDRPGLLADITTVIAEEKINILSVNTRTD-DDGLATIRLTLEVRD   49 (71)
T ss_pred             CEEEEeccCcHHHHHHHHHHhCCCCEEEEEeEEC-CCCEEEEEEEEEECC
Confidence            4678999999999999999999999999987543 235566777777653

ACT_RelA-SpoT: the ACT domain found C-terminal of the RelA/SpoT domains. Enzymes of the Rel/Spo family enable bacteria to survive prolonged periods of nutrient limitation by controlling guanosine-3'-diphosphate-5'-(tri)diphosphate ((p)ppGpp) production and subsequent rRNA repression (stringent response). Both the synthesis of (p)ppGpp from ATP and GDP(GTP), and its hydrolysis to GDP(GTP) and pyrophosphate, are catalyzed by Rel/Spo proteins. In Escherichia coli and its close relatives, the metabolism of (p)ppGpp is governed by two homologous proteins, RelA and SpoT. The RelA protein catalyzes (p)ppGpp synthesis in a reaction requiring its binding to ribosomes bearing codon-specified uncharged tRNA. The major role of the SpoT protein is the breakdown of (p)ppGpp by a manganese-dependent (p)ppGpp pyrophosphohydrolase activity. Although the stringent response appears to be tightly regulated by these two enzymes i

>PRK04435 hypothetical protein; Provisional

Probab=97.64  E-value=0.00026  Score=61.28  Aligned_cols=69  Identities=17%  Similarity=0.137  Sum_probs=52.4

Q ss_pred             CCcccEEEEEEcCCccchHHHHHHHHHhcCCeEeEeeeeccCCCCeEEEEEEEEeCCCCCCHHHHHHHHH
Q 021895           38 PTLTHGIHVFHCPDEVGIVAKLSECIASRGGNILAADVFVPEKKNVFYSRSEFIFDPIKWPREQMDEDFF  107 (306)
Q Consensus        38 p~~~k~ILTViGpDRpGIVAaVS~~LAe~G~NIlD~sQ~id~l~G~FfMrmeVdv~~~~~~~eeLreaL~  107 (306)
                      -...+..|++.++|++|+.++|.+.|+++|+||+.++|... ..|...+.+.++..+....+++|.+.|+
T Consensus        65 ~~~r~vtL~i~l~Dr~GlLs~Il~~IA~~~aNIltI~q~i~-~~g~a~vs~tVevs~~~~~L~~Li~~L~  133 (147)
T PRK04435         65 VKGKIITLSLLLEDRSGTLSKVLNVIAEAGGNILTINQSIP-LQGRANVTISIDTSSMEGDIDELLEKLR  133 (147)
T ss_pred             CCCcEEEEEEEEecCCCHHHHHHHHHHHcCCCeEEEEEEcC-CCCEEEEEEEEEeCChHHHHHHHHHHHH
Confidence            46677899999999999999999999999999999999653 3577777888877643223334444333

>cd04879 ACT_3PGDH-like ACT_3PGDH-like CD includes the C-terminal ACT (regulatory) domain of D-3-phosphoglycerate dehydrogenase (3PGDH)

Probab=97.62  E-value=0.00036  Score=49.59  Aligned_cols=60  Identities=22%  Similarity=0.220  Sum_probs=44.1

Q ss_pred             EEEEcCCccchHHHHHHHHHhcCCeEeEeeeeccCCCCeEEEEEEEEeCCCCCCHHHHHHHHHH
Q 021895           45 HVFHCPDEVGIVAKLSECIASRGGNILAADVFVPEKKNVFYSRSEFIFDPIKWPREQMDEDFFK  108 (306)
Q Consensus        45 LTViGpDRpGIVAaVS~~LAe~G~NIlD~sQ~id~l~G~FfMrmeVdv~~~~~~~eeLreaL~~  108 (306)
                      +.+.++|++|+++.|++.|+++|+||.++........|...+.+.++  . . ..+++.+.|++
T Consensus         2 l~v~~~d~~g~l~~i~~~l~~~~~nI~~~~~~~~~~~~~~~~~~~v~--~-~-~~~~l~~~l~~   61 (71)
T cd04879           2 LLIVHKDVPGVIGKVGTILGEHGINIAAMQVGRKEKGGIAYMVLDVD--S-P-VPEEVLEELKA   61 (71)
T ss_pred             EEEEecCCCCHHHHHHHHHHhcCCCeeeEEEeccCCCCEEEEEEEcC--C-C-CCHHHHHHHHc
Confidence            57789999999999999999999999999886432235655566553  2 2 34566666654

ACT_3PGDH-like: The ACT_3PGDH-like CD includes the C-terminal ACT (regulatory) domain of D-3-phosphoglycerate dehydrogenase (3PGDH), with or without an extended C-terminal (xct) region found in various bacteria, archaea, fungi, and plants. 3PGDH is an enzyme that belongs to the D-isomer specific, 2-hydroxyacid dehydrogenase family and catalyzes the oxidation of D-3-phosphoglycerate to 3- phosphohydroxypyruvate, which is the first step in the biosynthesis of L-serine, using NAD+ as the oxidizing agent. In bacteria, 3PGDH is feedback controlled by the end product L-serine in an allosteric manner. In the Escherichia coli homotetrameric enzyme, the interface at adjacent ACT (regulatory) domains couples to create an extended beta-sheet. Each regulatory interface forms two serine-binding sites. The mechanism by which serine transmits inhibition to the active

>KOG2452 consensus Formyltetrahydrofolate dehydrogenase [Nucleotide transport and metabolism]

Probab=97.58  E-value=0.00012  Score=75.00  Aligned_cols=127  Identities=16%  Similarity=0.170  Sum_probs=89.7

Q ss_pred             ceEEEEEeCCcchHHHHHHhhhcCCCCeEEEEEeeCCCCCC-ChhHHHHHHhCCCCEEEeCC--CCCChHHHHHHHhc--
Q 021895          129 YKVAVLASKQEHCLVDFLYGWQEGKLPVEITCVISNHDRGP-NSHVIRFLERHGIPYHYLCA--KENEREEELLELVQ--  203 (306)
Q Consensus       129 ~riavl~S~~g~~L~~ll~~~~~g~l~~~I~~Visn~~~~~-~~~~~~~A~~~gIp~~~~~~--k~~~~e~e~~~~v~--  203 (306)
                      +||||.+-.-  .=++.....+..  .+||+.|.+-+|+.- ..+..--|++-|+|++..++  +.++.-.+++++.+  
T Consensus         1 mkiaiigqs~--fg~~vy~~lrk~--gheiv~vftipdk~g~~d~l~~ea~kdgvpv~k~srwr~k~~~lp~~~~~y~~~   76 (881)
T KOG2452|consen    1 MKIAVIGQSL--FGQEVYCHLRKE--GHEVVGVFTVPDKDGKADPLGLEAEKDGVPVFKYSRWRAKAQALPDVVAKYQAL   76 (881)
T ss_pred             CeeEEechhh--hhHHHHHHHHhc--CceEEEEEEecCCCCCcCcccccccccCcceechhhhhhhccccHHHHHHHHhh
Confidence            5788876443  123333333222  489999999887532 23444457888999988763  33322256777766  


Q ss_pred             CCcEEEEeccCCCCcCchhhhhhhhhhhhhccCCCccccccccCCHhHHhhcCCCeeEeCCCCCCCCCCCcHHHHHHHHH
Q 021895          204 NTDFLVLARYMQPVPLQKEAYLGYKLLESLSSKGSLTSYFNMILSGKFLRSYGKDVINIHHGLLPSFKGGKPAKQVGCFT  283 (306)
Q Consensus       204 ~~D~vVlA~ym~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~~~l~~~~~~iINiHpsLLP~f~Ga~p~~~A~~~~  283 (306)
                      .+++-||-=.-|                              .++-++.+.+.++-|-.|||+||+.||+.+++|.+.-.
T Consensus        77 gaelnvlpfcsq------------------------------fip~ei~~ap~~~siiyhps~lp~hrgasainwtli~g  126 (881)
T KOG2452|consen   77 GAELNVLPFCSQ------------------------------FIPMEIISAPRHGSIIYHPSLLPRHRGASAINWTLIHG  126 (881)
T ss_pred             cccccccchhhh------------------------------ccchhhcccccCCceeeccccCccccCccccceEEEec
Confidence            789989876666                              99999999999999999999999999999999975544


Q ss_pred             hhcCce
Q 021895          284 FCLGNL  289 (306)
Q Consensus       284 ~~l~~~  289 (306)
                      =.-||+
T Consensus       127 d~~~g~  132 (881)
T KOG2452|consen  127 DKKGGF  132 (881)
T ss_pred             cccCce
Confidence            444443

>COG1707 ACT domain-containing protein [General function prediction only]

Probab=97.49  E-value=0.0011  Score=60.24  Aligned_cols=63  Identities=21%  Similarity=0.172  Sum_probs=48.5

Q ss_pred             EEEEEcCCccchHHHHHHHHHhcCCeEeEeeeeccCCCCeEEEEEEEEeCCCCCCHHHHHHHHHHH
Q 021895           44 IHVFHCPDEVGIVAKLSECIASRGGNILAADVFVPEKKNVFYSRSEFIFDPIKWPREQMDEDFFKL  109 (306)
Q Consensus        44 ILTViGpDRpGIVAaVS~~LAe~G~NIlD~sQ~id~l~G~FfMrmeVdv~~~~~~~eeLreaL~~l  109 (306)
                      -+++....+||...++|..++++|+||+-.+|+...++..-+..|+++  + ..+.+.|.+.++..
T Consensus         4 ~lsi~~enk~GvL~~ltgiiae~ggNIt~~q~~~~~~g~~~~iYmEiE--g-i~d~e~l~~~lks~   66 (218)
T COG1707           4 GLSIIAENKPGVLRDLTGIIAEEGGNITYAQQFLEKDGEKALIYMEIE--G-IDDFEKLLERLKSF   66 (218)
T ss_pred             eeEEEeecCccHHHHHHHHHHhcCCceEeeehhhhccCceEEEEEEee--C-CCCHHHHHHHhhcc
Confidence            467788999999999999999999999999999765443445556654  2 23678888777653

>cd04903 ACT_LSD C-terminal ACT domain of the L-serine dehydratase (LSD), iron-sulfur-dependent, beta subunit

Probab=97.47  E-value=0.00063  Score=48.61  Aligned_cols=60  Identities=23%  Similarity=0.170  Sum_probs=42.5

Q ss_pred             EEEEcCCccchHHHHHHHHHhcCCeEeEeeeeccCCCCeEEEEEEEEeCCCCCCHHHHHHHHHH
Q 021895           45 HVFHCPDEVGIVAKLSECIASRGGNILAADVFVPEKKNVFYSRSEFIFDPIKWPREQMDEDFFK  108 (306)
Q Consensus        45 LTViGpDRpGIVAaVS~~LAe~G~NIlD~sQ~id~l~G~FfMrmeVdv~~~~~~~eeLreaL~~  108 (306)
                      |++.++|++|+++++++.|+++|+||..+.+.....++...+.  +.+.+.  ..+++.+.|++
T Consensus         2 l~i~~~d~~g~l~~i~~~l~~~~~~I~~~~~~~~~~~~~~~i~--i~v~~~--~~~~~i~~l~~   61 (71)
T cd04903           2 LIVVHKDKPGAIAKVTSVLADHEINIAFMRVSRKEKGDQALMV--IEVDQP--IDEEVIEEIKK   61 (71)
T ss_pred             EEEEeCCCCChHHHHHHHHHHcCcCeeeeEEEeccCCCeEEEE--EEeCCC--CCHHHHHHHHc
Confidence            5788999999999999999999999999887532123444444  444432  45566666654

The C-terminal ACT domain of the L-serine dehydratase (LSD), iron-sulfur-dependent, beta subunit, found in various bacterial anaerobes such as Clostridium, Bacillis, and Treponema species. These enzymes catalyze the deamination of L-serine, producing pyruvate and ammonia. Unlike the eukaryotic L-serine dehydratase, which requires the pyridoxal-5'-phosphate (PLP) cofactor, the prokaryotic L-serine dehydratase contains an [4Fe-4S] cluster instead of a PLP active site. The LSD alpha and beta subunits of the 'clostridial' enzyme are encoded by the sdhA and sdhB genes. The single subunit bacterial homologs of L-serine dehydratase (LSD1, LSD2, TdcG) present in Escherichia coli, and other enterobacterials, lack the ACT domain described here. Members of this CD belong to the superfamily of ACT regulatory domains.

>PRK06737 acetolactate synthase 1 regulatory subunit; Validated

Probab=97.46  E-value=0.00045  Score=54.43  Aligned_cols=66  Identities=11%  Similarity=0.073  Sum_probs=49.8

Q ss_pred             ccEEEEEEcCCccchHHHHHHHHHhcCCeEeEeeeeccCCCCeEEEEEEEEeCCCCCCHHHHHHHHHH
Q 021895           41 THGIHVFHCPDEVGIVAKLSECIASRGGNILAADVFVPEKKNVFYSRSEFIFDPIKWPREQMDEDFFK  108 (306)
Q Consensus        41 ~k~ILTViGpDRpGIVAaVS~~LAe~G~NIlD~sQ~id~l~G~FfMrmeVdv~~~~~~~eeLreaL~~  108 (306)
                      |++.+++.-.++||+.++|++.++.+|.||..++.-.....|..-|.+.+.-+  +...+++...|++
T Consensus         1 m~~tisi~v~n~pGVL~Ri~~lf~rRgfNI~Sl~vg~te~~~~sriti~~~~~--~~~i~qi~kQL~K   66 (76)
T PRK06737          1 MSHTFSLVIHNDPSVLLRISGIFARRGYYISSLNLNERDTSGVSEMKLTAVCT--ENEATLLVSQLKK   66 (76)
T ss_pred             CeEEEEEEEecCCCHHHHHHHHHhccCcceEEEEecccCCCCeeEEEEEEECC--HHHHHHHHHHHhC
Confidence            46889999999999999999999999999999988655556766666665422  2244555555544

>cd04883 ACT_AcuB C-terminal ACT domain of the Bacillus subtilis acetoin utilization protein, AcuB

Probab=97.42  E-value=0.0012  Score=48.55  Aligned_cols=61  Identities=18%  Similarity=0.187  Sum_probs=44.3

Q ss_pred             EEEEEcCCccchHHHHHHHHHhcCCeEeEeeeeccCCCCeEEEEEEEEeCCCCCCHHHHHHHHHH
Q 021895           44 IHVFHCPDEVGIVAKLSECIASRGGNILAADVFVPEKKNVFYSRSEFIFDPIKWPREQMDEDFFK  108 (306)
Q Consensus        44 ILTViGpDRpGIVAaVS~~LAe~G~NIlD~sQ~id~l~G~FfMrmeVdv~~~~~~~eeLreaL~~  108 (306)
                      -+++..+|++|..+++++.++++|+||..+........+.=.+++.++.+    +.+++.+.|++
T Consensus         3 ~~~v~~~d~pG~l~~i~~~l~~~~inI~~i~~~~~~~~~~~~v~i~v~~~----~~~~~~~~L~~   63 (72)
T cd04883           3 QIEVRVPDRPGQLADIAAIFKDRGVNIVSVLVYPSKEEDNKILVFRVQTM----NPRPIIEDLRR   63 (72)
T ss_pred             EEEEEECCCCCHHHHHHHHHHHcCCCEEEEEEeccCCCCeEEEEEEEecC----CHHHHHHHHHH
Confidence            46788999999999999999999999999876543233444455555532    34567777765

This CD includes the C-terminal ACT domain of the Bacillus subtilis acetoin utilization protein, AcuB. AcuB is putatively involved in the anaerobic catabolism of acetoin, and related proteins. Studies report the induction of AcuB by nitrate respiration and also by fermentation. Since acetoin can be secreted and later serve as a source of carbon, it has been proposed that, during anaerobic growth when other carbon sources are exhausted, the induction of the AcuB protein results in acetoin catabolism. AcuB-like proteins have two N-terminal tandem CBS domains and a single C-terminal ACT domain. Members of this CD belong to the superfamily of ACT regulatory domains.

>cd04926 ACT_ACR_4 C-terminal ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein)

Probab=97.38  E-value=0.0016  Score=49.31  Aligned_cols=35  Identities=14%  Similarity=0.291  Sum_probs=31.6

Q ss_pred             EEEEEcCCccchHHHHHHHHHhcCCeEeEeeeecc
Q 021895           44 IHVFHCPDEVGIVAKLSECIASRGGNILAADVFVP   78 (306)
Q Consensus        44 ILTViGpDRpGIVAaVS~~LAe~G~NIlD~sQ~id   78 (306)
                      -++|..+||+|+.++|++.|+++|+||.....+..
T Consensus         3 ri~V~~~D~~Gll~~i~~~l~~~~lnI~sa~i~t~   37 (72)
T cd04926           3 RLELRTEDRVGLLSDVTRVFRENGLTVTRAEISTQ   37 (72)
T ss_pred             EEEEEECCccCHHHHHHHHHHHCCcEEEEEEEecC
Confidence            46889999999999999999999999999987643

This CD includes the C-terminal ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products have been described (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) and are represented in this CD. Members of this CD belong to the superfamily of ACT regulatory domains.

>cd04889 ACT_PDH-BS-like C-terminal ACT domain of the monofunctional, NAD dependent, prephenate dehydrogenase (PDH) enzyme that catalyzes the formation of 4-hydroxyphenylpyruvate from prephenate

Probab=97.33  E-value=0.00061  Score=48.42  Aligned_cols=46  Identities=22%  Similarity=0.181  Sum_probs=37.9

Q ss_pred             EEEEcCCccchHHHHHHHHHhcCCeEeEeeeeccCCCCeEEEEEEEE
Q 021895           45 HVFHCPDEVGIVAKLSECIASRGGNILAADVFVPEKKNVFYSRSEFI   91 (306)
Q Consensus        45 LTViGpDRpGIVAaVS~~LAe~G~NIlD~sQ~id~l~G~FfMrmeVd   91 (306)
                      +++..+|+||.++++++.|+++|+||..+...... ++.-.+++.++
T Consensus         1 ~~v~~~d~~G~l~~i~~~l~~~~inI~~~~~~~~~-~~~~~~~~~v~   46 (56)
T cd04889           1 LSVFVENKPGRLAEVTEILAEAGINIKAISIAETR-GEFGILRLIFS   46 (56)
T ss_pred             CEEEeCCCCChHHHHHHHHHHcCCCEeeEEEEEcc-CCcEEEEEEEC
Confidence            35678999999999999999999999999876443 46677777775

Included in this CD is the C-terminal ACT domain of the monofunctional, NAD dependent, prephenate dehydrogenase (PDH) enzyme that catalyzes the formation of 4-hydroxyphenylpyruvate from prephenate, found in Bacillus subtilis (BS) and other Firmicutes, Deinococci, and Bacteroidetes. PDH is the first enzyme in the aromatic amino acid pathway specific for the biosynthesis of tyrosine. This enzyme is feedback inhibited by tyrosine in B. subtilis and other microorganisms. Both phenylalanine and tryptophan have been shown to be inhibitors of this activity in B. subtilis. Bifunctional chorismate mutase-PDH (TyrA) enzymes such as those seen in Escherichia coli do not contain an ACT domain. Also included in this CD is the N-terminal ACT domain of a novel protein composed almost entirely of two tandem A

>cd04877 ACT_TyrR N-terminal ACT domain of the TyrR protein

Probab=97.33  E-value=0.0013  Score=49.68  Aligned_cols=57  Identities=11%  Similarity=0.136  Sum_probs=43.3

Q ss_pred             EEEEcCCccchHHHHHHHHHhcCCeEeEeeeeccCCCCeEEEEEEEEeCCCCCCHHHHHHHHHHHH
Q 021895           45 HVFHCPDEVGIVAKLSECIASRGGNILAADVFVPEKKNVFYSRSEFIFDPIKWPREQMDEDFFKLS  110 (306)
Q Consensus        45 LTViGpDRpGIVAaVS~~LAe~G~NIlD~sQ~id~l~G~FfMrmeVdv~~~~~~~eeLreaL~~la  110 (306)
                      |.+.|.||+|+++.|++.+++.|+||..++....   +.  +.+.+++.    +.++|..-++++.
T Consensus         3 l~I~~~dr~Gll~dI~~~i~~~~~nI~~~~~~~~---~~--i~l~i~v~----~~~~L~~li~~L~   59 (74)
T cd04877           3 LEITCEDRLGITQEVLDLLVEHNIDLRGIEIDPK---GR--IYLNFPTI----EFEKLQTLMPEIR   59 (74)
T ss_pred             EEEEEEccchHHHHHHHHHHHCCCceEEEEEecC---Ce--EEEEeEec----CHHHHHHHHHHHh
Confidence            6788999999999999999999999999998532   33  66666654    3556555555443

ACT_TyrR: N-terminal ACT domain of the TyrR protein. The TyrR protein of Escherichia coli controls the expression of a group of transcription units (TyrR regulon) whose gene products are involved in the biosynthesis or transport of the aromatic amino acids. Binding to specific DNA sequences known as TyrR boxes, the TyrR protein can either activate or repress transcription at different sigma70 promoters. Its regulatory activity occurs in response to intracellular levels of tyrosine, phenylalanine and tryptophan. The TyrR protein consists of an N-terminal region important for transcription activation with an ATP-independent aromatic amino acid binding site (contained within the ACT domain) and is involved in dimerization; a central region with an ATP binding site, an ATP-dependent aromatic amino acid binding site and is involved in hexamerization; and a helix turn helix DNA binding C-terminal region. In solution, in the absence

>PRK11152 ilvM acetolactate synthase 2 regulatory subunit; Provisional

Probab=97.30  E-value=0.0012  Score=51.86  Aligned_cols=67  Identities=7%  Similarity=0.097  Sum_probs=52.0

Q ss_pred             cccEEEEEEcCCccchHHHHHHHHHhcCCeEeEeeeeccCCCCeEEEEEEEEeCCCCCCHHHHHHHHHHH
Q 021895           40 LTHGIHVFHCPDEVGIVAKLSECIASRGGNILAADVFVPEKKNVFYSRSEFIFDPIKWPREQMDEDFFKL  109 (306)
Q Consensus        40 ~~k~ILTViGpDRpGIVAaVS~~LAe~G~NIlD~sQ~id~l~G~FfMrmeVdv~~~~~~~eeLreaL~~l  109 (306)
                      +|++.+++.-.++||+++.|++.+..+|.||..++.-...+.+.-.|.+.++   .+...+++...|+++
T Consensus         1 mm~~~lsi~v~n~pGVL~Ri~~lf~rRGfnI~sl~v~~t~~~~~sriti~v~---~~~~i~ql~kQL~KL   67 (76)
T PRK11152          1 MMQHQLTIKARFRPEVLERVLRVVRHRGFQVCSMNMTQNTDAQNINIELTVA---SERPIDLLSSQLNKL   67 (76)
T ss_pred             CceEEEEEEEECCccHHHHHHHHHhcCCeeeeeEEeeecCCCCEEEEEEEEC---CCchHHHHHHHHhcC
Confidence            4688999999999999999999999999999999887544455555555553   244677777777654

>PRK11895 ilvH acetolactate synthase 3 regulatory subunit; Reviewed

Probab=97.27  E-value=0.001  Score=59.07  Aligned_cols=67  Identities=19%  Similarity=0.131  Sum_probs=50.2

Q ss_pred             ccEEEEEEcCCccchHHHHHHHHHhcCCeEeEeeeeccCCCCeEEEEEEEEeCCCCCCHHHHHHHHHHH
Q 021895           41 THGIHVFHCPDEVGIVAKLSECIASRGGNILAADVFVPEKKNVFYSRSEFIFDPIKWPREQMDEDFFKL  109 (306)
Q Consensus        41 ~k~ILTViGpDRpGIVAaVS~~LAe~G~NIlD~sQ~id~l~G~FfMrmeVdv~~~~~~~eeLreaL~~l  109 (306)
                      |+.++++.-+|+||..++|++.++++|+||..+........|...|.+.++.+  +...+++...|+++
T Consensus         1 m~~~IsV~veN~pGvL~rI~~lf~rrg~NI~Sl~v~~te~~~~sriti~V~~~--~~~i~qi~kQl~KL   67 (161)
T PRK11895          1 MRHTLSVLVENEPGVLSRVAGLFSRRGYNIESLTVGPTEDPGLSRMTIVTSGD--EQVIEQITKQLNKL   67 (161)
T ss_pred             CeEEEEEEEcCCCcHHHHHHHHHHhCCCcEEEEEeeecCCCCEEEEEEEEECC--HHHHHHHHHHHhcc
Confidence            46789999999999999999999999999999987654335666666666643  22455555555543

>cd02116 ACT ACT domains are commonly involved in specifically binding an amino acid or other small ligand leading to regulation of the enzyme

Probab=97.27  E-value=0.0017  Score=42.07  Aligned_cols=34  Identities=26%  Similarity=0.351  Sum_probs=30.8

Q ss_pred             EEEEcCCccchHHHHHHHHHhcCCeEeEeeeecc
Q 021895           45 HVFHCPDEVGIVAKLSECIASRGGNILAADVFVP   78 (306)
Q Consensus        45 LTViGpDRpGIVAaVS~~LAe~G~NIlD~sQ~id   78 (306)
                      +++.|+|++|+++++++.|+++|+||..+.+...
T Consensus         1 i~i~~~~~~~~l~~i~~~l~~~~~~i~~~~~~~~   34 (60)
T cd02116           1 LTVSGPDRPGLLAKVLSVLAEAGINITSIEQRTS   34 (60)
T ss_pred             CEEEecCCCchHHHHHHHHHHCCCcEEEEEeEEc
Confidence            4788999999999999999999999999988643

Members of this CD belong to the superfamily of ACT regulatory domains. Pairs of ACT domains are commonly involved in specifically binding an amino acid or other small ligand leading to regulation of the enzyme. The ACT domain has been detected in a number of diverse proteins; some of these proteins are involved in amino acid and purine biosynthesis, phenylalanine hydroxylation, regulation of bacterial metabolism and transcription, and many remain to be characterized. ACT domain-containing enzymes involved in amino acid and purine synthesis are in many cases allosteric enzymes with complex regulation enforced by the binding of ligands. The ACT domain is commonly involved in the binding of a small regulatory molecule, such as the amino acids L-Ser and L-Phe in the case of D-3-phosphoglycerate dehydrogenase and the bifunctional chorismate mutase-p

>cd04901 ACT_3PGDH C-terminal ACT (regulatory) domain of D-3-Phosphoglycerate Dehydrogenase (3PGDH) found in fungi and bacteria

Probab=97.26  E-value=0.00046  Score=50.24  Aligned_cols=58  Identities=14%  Similarity=0.140  Sum_probs=43.4

Q ss_pred             EEEEcCCccchHHHHHHHHHhcCCeEeEeeeeccCCCCeEEEEEEEEeCCCCCCHHHHHHHHHH
Q 021895           45 HVFHCPDEVGIVAKLSECIASRGGNILAADVFVPEKKNVFYSRSEFIFDPIKWPREQMDEDFFK  108 (306)
Q Consensus        45 LTViGpDRpGIVAaVS~~LAe~G~NIlD~sQ~id~l~G~FfMrmeVdv~~~~~~~eeLreaL~~  108 (306)
                      +++.+.|++|.++.+++.++++|+||..+....  ..|...|.++++.+    ..+++.+.+++
T Consensus         2 ~~~~~~d~~g~l~~i~~~l~~~~~nI~~~~~~~--~~~~a~~~~~~~~~----~l~~li~~l~~   59 (69)
T cd04901           2 ILHIHKNVPGVLGQINTILAEHNINIAAQYLQT--RGEIGYVVIDIDSE----VSEELLEALRA   59 (69)
T ss_pred             EEEEecCCCcHHHHHHHHHHHcCCCHHHHhccC--CCCEEEEEEEcCCC----CCHHHHHHHHc
Confidence            577899999999999999999999998876532  24677777776643    34555555553

The C-terminal ACT (regulatory) domain of D-3-Phosphoglycerate Dehydrogenase (3PGDH) found in fungi and bacteria. 3PGDH is an enzyme that belongs to the D-isomer specific, 2-hydroxyacid dehydrogenase family and catalyzes the oxidation of D-3-phosphoglycerate to 3- phosphohydroxypyruvate, which is the first step in the biosynthesis of L-serine, using NAD+ as the oxidizing agent. In Escherichia coli, the SerA 3PGDH is feedback-controlled by the end product L-serine in an allosteric manner. In the homotetrameric enzyme, the interface at adjacent ACT (regulatory) domains couples to create an extended beta-sheet. Each regulatory interface forms two serine-binding sites. The mechanism by which serine transmits inhibition to the active site is postulated to involve the tethering of the regulatory domains together to create a rigid quaternary structure with a solvent-

>cd04882 ACT_Bt0572_2 C-terminal ACT domain of a novel protein composed of just two ACT domains

Probab=97.20  E-value=0.0014  Score=46.96  Aligned_cols=59  Identities=20%  Similarity=0.180  Sum_probs=41.5

Q ss_pred             EEEEEcCCccchHHHHHHHHHhcCCeEeEeeeeccCCCCeEEEEEEEEeCCCCCCHHHHHHHHHH
Q 021895           44 IHVFHCPDEVGIVAKLSECIASRGGNILAADVFVPEKKNVFYSRSEFIFDPIKWPREQMDEDFFK  108 (306)
Q Consensus        44 ILTViGpDRpGIVAaVS~~LAe~G~NIlD~sQ~id~l~G~FfMrmeVdv~~~~~~~eeLreaL~~  108 (306)
                      ++++.=+|+||.++++++.|+++|+||..+.++.....|.-  ++.+.++.    .+.+.+.|++
T Consensus         1 ~i~v~~~d~pG~L~~i~~~l~~~~~nI~~i~~~~~~~~~~~--~v~~~ve~----~~~~~~~L~~   59 (65)
T cd04882           1 VLAVEVPDKPGGLHEILQILSEEGINIEYMYAFVEKKGGKA--LLIFRTED----IEKAIEVLQE   59 (65)
T ss_pred             CEEEEeCCCCcHHHHHHHHHHHCCCChhheEEEccCCCCeE--EEEEEeCC----HHHHHHHHHH
Confidence            35667799999999999999999999999887543222332  34454432    5566666654

Included in this CD is the C-terminal ACT domain of a novel protein composed of just two ACT domains, as seen in the yet uncharacterized structure (pdb 2F06) of the Bt0572 protein from Bacteroides thetaiotaomicron and related proteins. Members of this CD belong to the superfamily of ACT regulatory domains.

>cd04897 ACT_ACR_3 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein)

Probab=97.20  E-value=0.00074  Score=53.02  Aligned_cols=34  Identities=9%  Similarity=0.170  Sum_probs=31.1

Q ss_pred             EEEEEEcCCccchHHHHHHHHHhcCCeEeEeeee
Q 021895           43 GIHVFHCPDEVGIVAKLSECIASRGGNILAADVF   76 (306)
Q Consensus        43 ~ILTViGpDRpGIVAaVS~~LAe~G~NIlD~sQ~   76 (306)
                      .||.|.|+||||+.+.|+..|++.|++|....-.
T Consensus         2 TvveV~~~DRpGLL~~i~~~l~~~~l~I~~A~I~   35 (75)
T cd04897           2 SVVTVQCRDRPKLLFDVVCTLTDMDYVVFHATID   35 (75)
T ss_pred             EEEEEEeCCcCcHHHHHHHHHHhCCeEEEEEEEe
Confidence            4899999999999999999999999999986554

This CD includes the third ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products have been described (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) and are represented in this CD. Members of this CD belong to the superfamily of ACT regulatory domains.

>cd04884 ACT_CBS C-terminal ACT domain of the cystathionine beta-synthase (CBS) domain protein found in Thermotoga maritima, Tm0935, and delta proteobacteria

Probab=97.16  E-value=0.0024  Score=47.74  Aligned_cols=33  Identities=12%  Similarity=0.186  Sum_probs=28.9

Q ss_pred             EEEEcCCccchHHHHHHHHHhcCCeEeEeeeec
Q 021895           45 HVFHCPDEVGIVAKLSECIASRGGNILAADVFV   77 (306)
Q Consensus        45 LTViGpDRpGIVAaVS~~LAe~G~NIlD~sQ~i   77 (306)
                      +++.=+|+||..+++++.++++|+||+.+.+.-
T Consensus         2 l~v~~~d~pG~L~~l~~~i~~~g~nI~~i~~~~   34 (72)
T cd04884           2 FTFLLEDKPGTLKPVVDTLREFNARIISILTAF   34 (72)
T ss_pred             EEEEecCCCccHHHHHHHHHHCCCeEEEEEecc
Confidence            455669999999999999999999999997653

This CD includes the C-terminal ACT domain of the cystathionine beta-synthase (CBS) domain protein found in Thermotoga maritima, Tm0935, and delta proteobacteria. This protein has two N-terminal tandem CBS domains and a single C-terminal ACT domain. The CBS domain is found in a wide range of proteins, often in tandem arrangements and together with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Members of this CD belong to the superfamily of ACT regulatory domains.

>PRK13562 acetolactate synthase 1 regulatory subunit; Provisional

Probab=97.12  E-value=0.0017  Score=52.29  Aligned_cols=68  Identities=10%  Similarity=0.056  Sum_probs=50.7

Q ss_pred             ccEEEEEEcCCccchHHHHHHHHHhcCCeEeEeeeeccCCCCeEEEEEEEEeCCCCCCHHHHHHHHHHH
Q 021895           41 THGIHVFHCPDEVGIVAKLSECIASRGGNILAADVFVPEKKNVFYSRSEFIFDPIKWPREQMDEDFFKL  109 (306)
Q Consensus        41 ~k~ILTViGpDRpGIVAaVS~~LAe~G~NIlD~sQ~id~l~G~FfMrmeVdv~~~~~~~eeLreaL~~l  109 (306)
                      |+.+|++.=.|+||+.++||+.+..+|.||..++--.....|.--|.+.++..+ ....+++...|+++
T Consensus         1 mk~~isvlVeN~~GVL~Rit~lFsRRg~NI~SLtvg~Te~~~iSRmtivv~~~d-~~~ieqI~kQL~Kl   68 (84)
T PRK13562          1 MTRILKLQVADQVSTLNRITSAFVRLQYNIDTLHVTHSEQPGISNMEIQVDIQD-DTSLHILIKKLKQQ   68 (84)
T ss_pred             CcEEEEEEEECCCCHHHHHHHHHhccCcCeeeEEecccCCCCceEEEEEEeCCC-HHHHHHHHHHHhCC
Confidence            467899999999999999999999999999999887666667777777775322 22345555555443

>cd04908 ACT_Bt0572_1 N-terminal ACT domain of a novel protein composed almost entirely of two tandem ACT domains

Probab=97.11  E-value=0.0034  Score=46.30  Aligned_cols=57  Identities=16%  Similarity=0.112  Sum_probs=40.8

Q ss_pred             EEEEEcCCccchHHHHHHHHHhcCCeEeEeeeeccCCCCeEEEEEEEEeCCCCCCHHHHHHHHHH
Q 021895           44 IHVFHCPDEVGIVAKLSECIASRGGNILAADVFVPEKKNVFYSRSEFIFDPIKWPREQMDEDFFK  108 (306)
Q Consensus        44 ILTViGpDRpGIVAaVS~~LAe~G~NIlD~sQ~id~l~G~FfMrmeVdv~~~~~~~eeLreaL~~  108 (306)
                      .+++.-+|+||..+.|++.|+++|+||..+-.+...  +.-.+|+.+  +    +.++..+.|++
T Consensus         3 ri~v~v~d~pG~La~v~~~l~~~~inI~~i~~~~~~--~~~~~rl~~--~----~~~~~~~~L~~   59 (66)
T cd04908           3 QLSVFLENKPGRLAAVTEILSEAGINIRALSIADTS--EFGILRLIV--S----DPDKAKEALKE   59 (66)
T ss_pred             EEEEEEcCCCChHHHHHHHHHHCCCCEEEEEEEecC--CCCEEEEEE--C----CHHHHHHHHHH
Confidence            466778999999999999999999999998765432  233334444  2    24566666654

Included in this CD is the N-terminal ACT domain of a novel protein composed almost entirely of two tandem ACT domains as seen in the uncharacterized structure (pdb 2F06) of the Bt0572 protein from Bacteroides thetaiotaomicron and related ACT domains. These tandem ACT domain proteins belong to the superfamily of ACT regulatory domains.

>cd04895 ACT_ACR_1 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein)

Probab=97.09  E-value=0.0024  Score=49.73  Aligned_cols=35  Identities=11%  Similarity=0.066  Sum_probs=31.7

Q ss_pred             EEEEEEcCCccchHHHHHHHHHhcCCeEeEeeeec
Q 021895           43 GIHVFHCPDEVGIVAKLSECIASRGGNILAADVFV   77 (306)
Q Consensus        43 ~ILTViGpDRpGIVAaVS~~LAe~G~NIlD~sQ~i   77 (306)
                      .||.|.++||||+.+.|++.|+++|++|....-.+
T Consensus         2 Tviev~a~DRpGLL~~i~~~l~~~gl~I~~AkIsT   36 (72)
T cd04895           2 TLVKVDSARKPGILLEAVQVLTDLDLCITKAYISS   36 (72)
T ss_pred             EEEEEEECCcCCHHHHHHHHHHHCCcEEEEEEEee
Confidence            58999999999999999999999999999876543

This CD includes the N-terminal ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products have been described (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) and are represented in this CD. Members of this CD belong to the superfamily of ACT regulatory domains.

>TIGR00119 acolac_sm acetolactate synthase, small subunit

Probab=97.05  E-value=0.0023  Score=56.57  Aligned_cols=66  Identities=21%  Similarity=0.189  Sum_probs=49.3

Q ss_pred             cEEEEEEcCCccchHHHHHHHHHhcCCeEeEeeeeccCCCCeEEEEEEEEeCCCCCCHHHHHHHHHHH
Q 021895           42 HGIHVFHCPDEVGIVAKLSECIASRGGNILAADVFVPEKKNVFYSRSEFIFDPIKWPREQMDEDFFKL  109 (306)
Q Consensus        42 k~ILTViGpDRpGIVAaVS~~LAe~G~NIlD~sQ~id~l~G~FfMrmeVdv~~~~~~~eeLreaL~~l  109 (306)
                      +.++++.-+|+||..++|++.++++|+||..+...-....|...|.+.++.+  +...+++...|+++
T Consensus         1 ~~~isI~ven~pGvL~rI~~lf~rrg~NI~Sl~v~~t~~~~~sriti~V~~d--~~~i~qi~kQl~Kl   66 (157)
T TIGR00119         1 RHILSVLVENEPGVLSRVAGLFTRRGFNIESLTVGPTEDPDLSRMTIVVVGD--DKVLEQITKQLNKL   66 (157)
T ss_pred             CEEEEEEEcCCCcHHHHHHHHHHhCCceEEEEEEeecCCCCEEEEEEEEECC--HHHHHHHHHHHhcC
Confidence            3678999999999999999999999999999887654445676677777642  22455555555543

acetohydroxyacid synthase is a synonym.

>cd04905 ACT_CM-PDT C-terminal ACT domain of the bifunctional chorismate mutase-prephenate dehydratase (CM-PDT) enzyme and the prephenate dehydratase (PDT) enzyme

Probab=97.03  E-value=0.005  Score=47.05  Aligned_cols=65  Identities=17%  Similarity=0.153  Sum_probs=44.9

Q ss_pred             EEEEEcCCccchHHHHHHHHHhcCCeEeEeeeeccCC-CCeEEEEEEEEeCCCCCCHHHHHHHHHHHHh
Q 021895           44 IHVFHCPDEVGIVAKLSECIASRGGNILAADVFVPEK-KNVFYSRSEFIFDPIKWPREQMDEDFFKLSK  111 (306)
Q Consensus        44 ILTViGpDRpGIVAaVS~~LAe~G~NIlD~sQ~id~l-~G~FfMrmeVdv~~~~~~~eeLreaL~~la~  111 (306)
                      -+++.-+|++|..++|.+.++++|+||..+...-... .+.+..+++++..   .+.+.+++.++.+.+
T Consensus         3 sl~~~~~d~~G~L~~il~~f~~~~ini~~i~s~p~~~~~~~~~f~vd~~~~---~~~~~~~~~l~~l~~   68 (80)
T cd04905           3 SIVFTLPNKPGALYDVLGVFAERGINLTKIESRPSKGGLWEYVFFIDFEGH---IEDPNVAEALEELKR   68 (80)
T ss_pred             EEEEEECCCCCHHHHHHHHHHHCCcCEEEEEEEEcCCCCceEEEEEEEECC---CCCHHHHHHHHHHHH
Confidence            3455668999999999999999999999987653322 3345555555532   345667777766554

The C-terminal ACT domain of the bifunctional chorismate mutase-prephenate dehydratase (CM-PDT) enzyme and the prephenate dehydratase (PDT) enzyme, found in plants, fungi, bacteria, and archaea. The P-protein of E. coli (CM-PDT, PheA) catalyzes the conversion of chorismate to prephenate and then the decarboxylation and dehydration to form phenylpyruvate. These are the first two steps in the biosynthesis of L-Phe and L-Tyr via the shikimate pathway in microorganisms and plants. The E. coli P-protein (CM-PDT) has three domains with an N-terminal domain with chorismate mutase activity, a middle domain with prephenate dehydratase activity, and an ACT regulatory C-terminal domain. The prephenate dehydratase enzyme has a PDT and ACT domain. The ACT domain is essential to bring about the negative allosteric regulation by L-Phe bindi

>cd04880 ACT_AAAH-PDT-like ACT domain of the nonheme iron-dependent, aromatic amino acid hydroxylases (AAAH)

Probab=96.97  E-value=0.0049  Score=46.34  Aligned_cols=31  Identities=29%  Similarity=0.365  Sum_probs=27.5

Q ss_pred             EEEcCCccchHHHHHHHHHhcCCeEeEeeee
Q 021895           46 VFHCPDEVGIVAKLSECIASRGGNILAADVF   76 (306)
Q Consensus        46 TViGpDRpGIVAaVS~~LAe~G~NIlD~sQ~   76 (306)
                      .+.-+|+||..+.|-+.++++|+||..+...
T Consensus         3 ~~~l~d~pG~L~~vL~~f~~~~vni~~I~Sr   33 (75)
T cd04880           3 VFSLKNKPGALAKALKVFAERGINLTKIESR   33 (75)
T ss_pred             EEEeCCcCCHHHHHHHHHHHCCCCEEEEEee
Confidence            4555899999999999999999999999664

ACT domain of the nonheme iron-dependent, aromatic amino acid hydroxylases (AAAH): Phenylalanine hydroxylases (PAH), tyrosine hydroxylases (TH) and tryptophan hydroxylases (TPH), both peripheral (TPH1) and neuronal (TPH2) enzymes. This family of enzymes shares a common catalytic mechanism, in which dioxygen is used by an active site containing a single, reduced iron atom to hydroxylate an unactivated aromatic substrate, concomitant with a two-electron oxidation of tetrahydropterin (BH4) cofactor to its quinonoid dihydropterin form. Eukaryotic AAAHs have an N-terminal ACT (regulatory) domain, a middle catalytic domain and a C-terminal domain which is responsible for the oligomeric state of the enzyme forming a domain-swapped tetrameric coiled-coil. The PAH, TH, and TPH enzymes contain highly conserved catalytic domains but distinct N-terminal ACT domains and differ in their mech

>TIGR01693 UTase_glnD [Protein-PII] uridylyltransferase

Probab=96.91  E-value=0.0021  Score=69.08  Aligned_cols=59  Identities=19%  Similarity=0.244  Sum_probs=44.4

Q ss_pred             cCCCCCCcccEEEEEEcCCccchHHHHHHHHHhcCCeEeEeeeeccCC--CCeEEEEEEEE
Q 021895           33 ESSVSPTLTHGIHVFHCPDEVGIVAKLSECIASRGGNILAADVFVPEK--KNVFYSRSEFI   91 (306)
Q Consensus        33 ~~~~~p~~~k~ILTViGpDRpGIVAaVS~~LAe~G~NIlD~sQ~id~l--~G~FfMrmeVd   91 (306)
                      +-...+.....++.|.|+||||+++.|+++|+++|+||.+.+-.+...  ...|++.....
T Consensus       770 ~~d~~~s~~~t~~~v~~~DrpGll~~i~~~l~~~~~~i~~a~i~t~~~~~~d~F~v~~~~g  830 (850)
T TIGR01693       770 TILNTASRKATIMEVRALDRPGLLARVGRTLEELGLSIQSAKITTFGEKAEDVFYVTDLFG  830 (850)
T ss_pred             EEccCCCCCeEEEEEEECCccHHHHHHHHHHHHCCCeEEEEEEEecCccceeEEEEECCCC
Confidence            334445566799999999999999999999999999999987765422  23466544443

This model describes GlnD, the uridylyltransferase/uridylyl-removing enzyme for the nitrogen regulatory protein PII. Not all homologs of PII share the property of uridylyltransferase modification on the characteristic Tyr residue (see Prosite pattern PS00496 and document PDOC00439), but the modification site is preserved in the PII homolog of all species with a member of this family.

>PRK08178 acetolactate synthase 1 regulatory subunit; Reviewed

Probab=96.86  E-value=0.0045  Score=51.01  Aligned_cols=67  Identities=15%  Similarity=0.018  Sum_probs=48.5

Q ss_pred             cccEEEEEEcCCccchHHHHHHHHHhcCCeEeEeeeeccCCCCeEEEEEEEEeCCCCCCHHHHHHHHHHH
Q 021895           40 LTHGIHVFHCPDEVGIVAKLSECIASRGGNILAADVFVPEKKNVFYSRSEFIFDPIKWPREQMDEDFFKL  109 (306)
Q Consensus        40 ~~k~ILTViGpDRpGIVAaVS~~LAe~G~NIlD~sQ~id~l~G~FfMrmeVdv~~~~~~~eeLreaL~~l  109 (306)
                      +.+.+|++.-.|+||+.++||+.++.+|.||..++.--....+.=-|.+.+.  + +...+++...|+++
T Consensus         6 ~~~~tisvlv~N~pGVL~RIaglFsRRgyNIeSLtvg~te~~~iSRmtivv~--~-~~~i~Qi~kQL~KL   72 (96)
T PRK08178          6 HDNVILELTVRNHPGVMSHVCGLFARRAFNVEGILCLPIQDGDKSRIWLLVN--D-DQRLEQMISQIEKL   72 (96)
T ss_pred             CCCEEEEEEEECCcCHHHHHHHHHhcCCcCeeeEEEeecCCCCceEEEEEEc--C-chHHHHHHHHHhCC
Confidence            4558999999999999999999999999999998775444444444555554  2 23456666555554

>TIGR00719 sda_beta L-serine dehydratase, iron-sulfur-dependent, beta subunit

Probab=96.77  E-value=0.006  Score=55.48  Aligned_cols=51  Identities=18%  Similarity=0.118  Sum_probs=42.0

Q ss_pred             cEEEEEEcCCccchHHHHHHHHHhcCCeEeEeeeeccCCCCeEEEEEEEEe
Q 021895           42 HGIHVFHCPDEVGIVAKLSECIASRGGNILAADVFVPEKKNVFYSRSEFIF   92 (306)
Q Consensus        42 k~ILTViGpDRpGIVAaVS~~LAe~G~NIlD~sQ~id~l~G~FfMrmeVdv   92 (306)
                      ...|-+...||||+|+.|++.|.++|+||-.++-.-...+|.=.|.+.+|-
T Consensus       148 g~~L~~~~~D~PG~Ig~vg~~Lg~~~iNIa~m~v~r~~~g~~Ai~vl~vD~  198 (208)
T TIGR00719       148 HPAILLEHNDKFGTIAGVANLLAGFEINIEHLETAKKDIGNIALLTIEIDK  198 (208)
T ss_pred             ccEEEEEeCCCCChHHHHHHHHHhCCccEEEEEEEecCCCCEEEEEEEeCC
Confidence            446677779999999999999999999999998764445677778888873

This family of enzymes is not homologous to the pyridoxal phosphate-dependent threonine deaminases and eukaryotic serine deaminases.

>cd04896 ACT_ACR-like_3 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein)

Probab=96.56  E-value=0.026  Score=44.34  Aligned_cols=33  Identities=12%  Similarity=0.158  Sum_probs=30.4

Q ss_pred             EEEEEcCCccchHHHHHHHHHhcCCeEeEeeee
Q 021895           44 IHVFHCPDEVGIVAKLSECIASRGGNILAADVF   76 (306)
Q Consensus        44 ILTViGpDRpGIVAaVS~~LAe~G~NIlD~sQ~   76 (306)
                      ++-|.|+||||+.+.|++.++++|++|....-.
T Consensus         2 vlev~a~DRpGLL~~i~~~l~~~~l~i~~AkI~   34 (75)
T cd04896           2 LLQIRCVDQKGLLYDILRTSKDCNIQISYGRFS   34 (75)
T ss_pred             EEEEEeCCcccHHHHHHHHHHHCCeEEEEEEEe
Confidence            688999999999999999999999999986654

This CD includes the third ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) have been described, however, the ACR-like sequences in this CD are distinct from those characterized. This CD includes the Oryza sativa ACR-like protein (Os05g0113000) encoded on chromosome 5 and the Arabidopsis thaliana predicted gene product, At2g39570. Members of this CD belong to the superfamily of ACT regulatory domains.

>PF13710 ACT_5: ACT domain; PDB: 2FGC_A 2PC6_A 2F1F_B

Probab=96.35  E-value=0.013  Score=43.97  Aligned_cols=57  Identities=21%  Similarity=0.181  Sum_probs=43.3

Q ss_pred             CccchHHHHHHHHHhcCCeEeEeeeeccCCCCeEEEEEEEEeCCCCCCHHHHHHHHHHH
Q 021895           51 DEVGIVAKLSECIASRGGNILAADVFVPEKKNVFYSRSEFIFDPIKWPREQMDEDFFKL  109 (306)
Q Consensus        51 DRpGIVAaVS~~LAe~G~NIlD~sQ~id~l~G~FfMrmeVdv~~~~~~~eeLreaL~~l  109 (306)
                      |++|++..|++.+...|.||..++.......+..-|.+.++-++  ...++|...|+++
T Consensus         1 n~~GvL~Ri~~vf~rRg~nI~sl~v~~~~~~~~~riti~v~~~~--~~i~~l~~Ql~Kl   57 (63)
T PF13710_consen    1 NQPGVLNRITGVFRRRGFNIESLSVGPTEDPGISRITIVVSGDD--REIEQLVKQLEKL   57 (63)
T ss_dssp             SSTTHHHHHHHHHHTTT-EECEEEEEE-SSTTEEEEEEEEES-C--CHHHHHHHHHHCS
T ss_pred             CCcHHHHHHHHHHhcCCeEEeeEEeeecCCCCEEEEEEEEeeCc--hhHHHHHHHHhcc
Confidence            68999999999999999999999988766678877777777532  3566766666654

>cd04894 ACT_ACR-like_1 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein)

Probab=96.31  E-value=0.02  Score=44.38  Aligned_cols=62  Identities=18%  Similarity=0.254  Sum_probs=47.3

Q ss_pred             EEEEEcCCccchHHHHHHHHHhcCCeEeEeeeeccCCCCeEEEEEEEEeCCC---CCCHHHHHHHHHH
Q 021895           44 IHVFHCPDEVGIVAKLSECIASRGGNILAADVFVPEKKNVFYSRSEFIFDPI---KWPREQMDEDFFK  108 (306)
Q Consensus        44 ILTViGpDRpGIVAaVS~~LAe~G~NIlD~sQ~id~l~G~FfMrmeVdv~~~---~~~~eeLreaL~~  108 (306)
                      +|||-|||+.|+=..+++.+.+-|.+|..-+..+|   |+...++..-++..   +..-+-|+..|..
T Consensus         2 vitvnCPDktGLgcdlcr~il~fGl~i~rgd~sTD---GkWCyiv~wVv~~~~~~~~rW~lLK~RL~~   66 (69)
T cd04894           2 VITINCPDKTGLGCDLCRIILEFGLNITRGDDSTD---GRWCYIVFWVVPRPPSIKVRWDLLKNRLMS   66 (69)
T ss_pred             EEEEeCCCccCcccHHHHHHHHhceEEEecccccC---CcEEEEEEEEecCCCCCcccHHHHHHHHHh
Confidence            78999999999999999999999999999887554   66544444434432   4566777777764

This CD includes the N-terminal ACT domain of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) have been described, however, the ACR-like sequences in this CD are distinct from those characterized. This CD includes the Oryza sativa ACR-like protein (Os05g0113000) encoded on chromosome 5 and the Arabidopsis thaliana predicted gene product, At2g39570. Members of this CD belong to the superfamily of ACT regulatory domains.

>PRK05092 PII uridylyl-transferase; Provisional

Probab=96.19  E-value=0.013  Score=63.98  Aligned_cols=75  Identities=12%  Similarity=0.073  Sum_probs=51.9

Q ss_pred             CCCCCcccEEEEEEcCCccchHHHHHHHHHhcCCeEeEeeeeccCCCCeEEEEEEEEeCCC-C----CCHHHHHHHHHHH
Q 021895           35 SVSPTLTHGIHVFHCPDEVGIVAKLSECIASRGGNILAADVFVPEKKNVFYSRSEFIFDPI-K----WPREQMDEDFFKL  109 (306)
Q Consensus        35 ~~~p~~~k~ILTViGpDRpGIVAaVS~~LAe~G~NIlD~sQ~id~l~G~FfMrmeVdv~~~-~----~~~eeLreaL~~l  109 (306)
                      ...+......|+|+|+||+|+.+.|+++|+.+|+||.+.+.++.. +|.-.-.+.|..+.. .    ...+.+++.|...
T Consensus       725 ~~~~~~~~t~v~I~~~Dr~GLfa~i~~~L~~~glnI~~A~I~t~~-dg~alD~F~V~~~~g~~~~~~~~~~~l~~~L~~~  803 (931)
T PRK05092        725 RPDPARGVTEVTVLAADHPGLFSRIAGACAAAGANIVDARIFTTT-DGRALDTFWIQDAFGRDEDEPRRLARLAKAIEDA  803 (931)
T ss_pred             EecCCCCeEEEEEEeCCCCcHHHHHHHHHHHCCCcEEEEEEEEec-CCeEEEEEEEECCCCCCCCCHHHHHHHHHHHHHH
Confidence            344555678999999999999999999999999999999987642 344222344532221 1    1255677777665


Q ss_pred             H
Q 021895          110 S  110 (306)
Q Consensus       110 a  110 (306)
                      .
T Consensus       804 l  804 (931)
T PRK05092        804 L  804 (931)
T ss_pred             H
Confidence            4

>PRK07334 threonine dehydratase; Provisional

Probab=96.18  E-value=0.033  Score=54.99  Aligned_cols=68  Identities=13%  Similarity=0.015  Sum_probs=51.8

Q ss_pred             CCcccEEEEEEcCCccchHHHHHHHHHhcCCeEeEeeeecc---CCCCeEEEEEEEEeCCCCCCHHHHHHHHHHH
Q 021895           38 PTLTHGIHVFHCPDEVGIVAKLSECIASRGGNILAADVFVP---EKKNVFYSRSEFIFDPIKWPREQMDEDFFKL  109 (306)
Q Consensus        38 p~~~k~ILTViGpDRpGIVAaVS~~LAe~G~NIlD~sQ~id---~l~G~FfMrmeVdv~~~~~~~eeLreaL~~l  109 (306)
                      -++.+.-|.+.+.||+|+++.|++.|++.++||.+++....   ...+...+.+.+++.    +.++|.+-++++
T Consensus       322 ~~~y~v~l~I~~~dr~GlL~dI~~~is~~~~nI~~v~~~~~~~~~~~~~~~i~l~i~V~----d~~~L~~vi~~L  392 (403)
T PRK07334        322 RAGRLARLRVDIRDRPGALARVTALIGEAGANIIEVSHQRLFTDLPAKGAELELVIETR----DAAHLQEVIAAL  392 (403)
T ss_pred             hCCCEEEEEEEeCCCCCHHHHHHHHHhhCCCceEEEEEEecccCCCCCeEEEEEEEEeC----CHHHHHHHHHHH
Confidence            34455788999999999999999999999999999987532   135777788888875    355555555543

>PRK03381 PII uridylyl-transferase; Provisional

Probab=96.12  E-value=0.022  Score=61.19  Aligned_cols=53  Identities=13%  Similarity=0.111  Sum_probs=42.0

Q ss_pred             CCCcccEEEEEEcCCccchHHHHHHHHHhcCCeEeEeeeeccCCCCeEEEEEEEE
Q 021895           37 SPTLTHGIHVFHCPDEVGIVAKLSECIASRGGNILAADVFVPEKKNVFYSRSEFI   91 (306)
Q Consensus        37 ~p~~~k~ILTViGpDRpGIVAaVS~~LAe~G~NIlD~sQ~id~l~G~FfMrmeVd   91 (306)
                      .+.....+|+|.|+||||++++||+.|+++|+||.+.+-++.  +++-.=.+.|.
T Consensus       702 ~~~~~~t~i~V~a~DrpGLla~Ia~~L~~~~lnI~~AkI~T~--g~~a~D~F~V~  754 (774)
T PRK03381        702 GASPDATVLEVRAADRPGLLARLARALERAGVDVRWARVATL--GADVVDVFYVT  754 (774)
T ss_pred             CCCCCeEEEEEEeCCchhHHHHHHHHHHHCCCeEEEEEEeec--CCeEEEEEEEE
Confidence            444456899999999999999999999999999999988764  44433344443

>PRK10872 relA (p)ppGpp synthetase I/GTP pyrophosphokinase; Provisional

Probab=95.86  E-value=0.04  Score=59.25  Aligned_cols=71  Identities=11%  Similarity=0.063  Sum_probs=55.6

Q ss_pred             cccEEEEEEcCCccchHHHHHHHHHhcCCeEeEeeeeccCCCCeEEEEEEEEeCCCCCCHHHHHHHHHHHHhhhh
Q 021895           40 LTHGIHVFHCPDEVGIVAKLSECIASRGGNILAADVFVPEKKNVFYSRSEFIFDPIKWPREQMDEDFFKLSKMFN  114 (306)
Q Consensus        40 ~~k~ILTViGpDRpGIVAaVS~~LAe~G~NIlD~sQ~id~l~G~FfMrmeVdv~~~~~~~eeLreaL~~la~elg  114 (306)
                      ....-|.|.+.||+|+++.|++.+++.++||.+++...+..++.+.|.+.+++.+    .++|.+-+..+.+--|
T Consensus       664 ~~~v~I~I~~~Dr~GlL~dIt~~is~~~~nI~~v~~~~~~~~~~~~~~~~ieV~~----~~~L~~l~~~L~~i~~  734 (743)
T PRK10872        664 GYSLVVRVTANDRSGLLRDITTILANEKVNVLGVASRSDTKQQLATIDMTIEIYN----LQVLGRVLGKLNQVPD  734 (743)
T ss_pred             eeEEEEEEEEcCCCCHHHHHHHHHHHCCCCeEEEEeEEcCCCCEEEEEEEEEECC----HHHHHHHHHHHhcCCC
Confidence            3456889999999999999999999999999999875433357788898888863    6777776666554434

>PRK11790 D-3-phosphoglycerate dehydrogenase; Provisional

Probab=95.86  E-value=0.02  Score=57.04  Aligned_cols=64  Identities=14%  Similarity=0.074  Sum_probs=47.7

Q ss_pred             CcccEEEEEEcCCccchHHHHHHHHHhcCCeEeEeeeeccCCCCeEEEEEEEEeCCCCCCHHHHHHHHHH
Q 021895           39 TLTHGIHVFHCPDEVGIVAKLSECIASRGGNILAADVFVPEKKNVFYSRSEFIFDPIKWPREQMDEDFFK  108 (306)
Q Consensus        39 ~~~k~ILTViGpDRpGIVAaVS~~LAe~G~NIlD~sQ~id~l~G~FfMrmeVdv~~~~~~~eeLreaL~~  108 (306)
                      ....+.|++.-.|+||+|++|++.|+++|+||-+++-.  +.++.=.|.+++|-   . ..+++.+.+++
T Consensus       335 ~~~~~rlii~h~d~pG~ia~it~~l~~~~iNI~~m~~~--~~~~~A~~iie~D~---~-~~~~~~~~i~~  398 (409)
T PRK11790        335 HPGGHRLLHIHENRPGVLAAINQIFAEQGINIAAQYLQ--TDGEIGYVVIDVDA---D-YAEEALDALKA  398 (409)
T ss_pred             CCCCceEEEEeCCCCCHHHHHHHHHHhcCCCHHHheec--cCCCEEEEEEEeCC---C-CcHHHHHHHHc
Confidence            34667888899999999999999999999999888774  33456666666653   2 23566666664

>cd04885 ACT_ThrD-I Tandem C-terminal ACT domains of threonine dehydratase I (ThrD-I; L-threonine hydrolyase)

Probab=95.84  E-value=0.037  Score=41.21  Aligned_cols=30  Identities=20%  Similarity=0.244  Sum_probs=26.9

Q ss_pred             EEEcCCccchHHHHHHHHHhcCCeEeEeeee
Q 021895           46 VFHCPDEVGIVAKLSECIASRGGNILAADVF   76 (306)
Q Consensus        46 TViGpDRpGIVAaVS~~LAe~G~NIlD~sQ~   76 (306)
                      +|.=|||||-.+++.+.+++ |.||++++.-
T Consensus         2 ~v~ipdkPG~l~~~~~~i~~-~~nI~~~~~~   31 (68)
T cd04885           2 AVTFPERPGALKKFLELLGP-PRNITEFHYR   31 (68)
T ss_pred             EEECCCCCCHHHHHHHHhCC-CCcEEEEEEE
Confidence            56669999999999999999 9999999774

This CD includes each of two tandem C-terminal ACT domains of threonine dehydratase I (ThrD-I; L-threonine hydrolyase) which catalyzes the committed step in branched chain amino acid biosynthesis in plants and microorganisms, the pyridoxal 5'-phosphate (PLP)-dependent dehydration/deamination of L-threonine (or L-serine) to 2-ketobutyrate (or pyruvate). ThrD-I is a cooperative, feedback-regulated (isoleucine and valine) allosteric enzyme that forms a tetramer and contains four pyridoxal phosphate moieties. Members of this CD belong to the superfamily of ACT regulatory domains.

>PF13840 ACT_7: ACT domain ; PDB: 3S1T_A 1ZHV_A 3AB4_K 3AB2_O 2DTJ_A 3AAW_A 2RE1_B 3MAH_A 1ZVP_D

Probab=95.52  E-value=0.017  Score=43.28  Aligned_cols=34  Identities=26%  Similarity=0.295  Sum_probs=30.0

Q ss_pred             cEEEEEEcC----CccchHHHHHHHHHhcCCeEeEeee
Q 021895           42 HGIHVFHCP----DEVGIVAKLSECIASRGGNILAADV   75 (306)
Q Consensus        42 k~ILTViGp----DRpGIVAaVS~~LAe~G~NIlD~sQ   75 (306)
                      -..|++.|+    |.+|++|++++.|+++|+||..++.
T Consensus         6 ~~~i~v~g~g~~~~~~Gv~a~i~~~La~~~I~i~~isS   43 (65)
T PF13840_consen    6 WAKISVVGPGLRFDVPGVAAKIFSALAEAGINIFMISS   43 (65)
T ss_dssp             EEEEEEEEECGTTTSHHHHHHHHHHHHHTTS-ECEEEE
T ss_pred             EEEEEEEccccCCCcccHHHHHHHHHHHCCCCEEEEEE
Confidence            357899999    8999999999999999999999983

>TIGR00691 spoT_relA (p)ppGpp synthetase, RelA/SpoT family

Probab=95.44  E-value=0.078  Score=56.41  Aligned_cols=68  Identities=12%  Similarity=0.059  Sum_probs=54.2

Q ss_pred             cccEEEEEEcCCccchHHHHHHHHHhcCCeEeEeeeeccCCCCeEEEEEEEEeCCCCCCHHHHHHHHHHHHhh
Q 021895           40 LTHGIHVFHCPDEVGIVAKLSECIASRGGNILAADVFVPEKKNVFYSRSEFIFDPIKWPREQMDEDFFKLSKM  112 (306)
Q Consensus        40 ~~k~ILTViGpDRpGIVAaVS~~LAe~G~NIlD~sQ~id~l~G~FfMrmeVdv~~~~~~~eeLreaL~~la~e  112 (306)
                      .-.+-|.+.+.||+|+++.|++.|++.++||.+++.... ..+.+.|.+.+++.    +.++|..-+.++-+-
T Consensus       608 ~f~v~I~I~~~dr~GlLadI~~~ia~~~~nI~~v~~~~~-~~~~~~~~~~ieV~----~~~~L~~ii~~L~~i  675 (683)
T TIGR00691       608 RFIVDINIEAVDRKGVLSDLTTAISENDSNIVSISTKTY-GKREAILNITVEIK----NYKHLLKIMLKIKTK  675 (683)
T ss_pred             eeEEEEEEEEecCCCHHHHHHHHHHHCCCCeEEEEeEEc-CCCEEEEEEEEEEC----CHHHHHHHHHHHhCC
Confidence            455688999999999999999999999999999987543 35777788888876    467777766665433

(p)ppGpp is a regulatory metabolite of the stringent response, but appears also to be involved in antibiotic biosynthesis in some species.

>PRK11092 bifunctional (p)ppGpp synthetase II/ guanosine-3',5'-bis pyrophosphate 3'-pyrophosphohydrolase; Provisional

Probab=95.39  E-value=0.08  Score=56.60  Aligned_cols=70  Identities=16%  Similarity=0.116  Sum_probs=54.6

Q ss_pred             cccEEEEEEcCCccchHHHHHHHHHhcCCeEeEeeeeccCCCCeEEEEEEEEeCCCCCCHHHHHHHHHHHHhhhh
Q 021895           40 LTHGIHVFHCPDEVGIVAKLSECIASRGGNILAADVFVPEKKNVFYSRSEFIFDPIKWPREQMDEDFFKLSKMFN  114 (306)
Q Consensus        40 ~~k~ILTViGpDRpGIVAaVS~~LAe~G~NIlD~sQ~id~l~G~FfMrmeVdv~~~~~~~eeLreaL~~la~elg  114 (306)
                      ....-|.+.+.||+|+++.|++.+++.++||.+++.... ..+.+.|.+.+++.+    .++|..-+.++.+--|
T Consensus       624 ~~~v~i~I~~~dr~GlL~dI~~~i~~~~~nI~~v~~~~~-~~~~~~~~~~ieV~~----~~~L~~i~~~Lr~i~~  693 (702)
T PRK11092        624 EFIAEIKVEMFNHQGALANLTAAINTTGSNIQSLNTEEK-DGRVYSAFIRLTARD----RVHLANIMRKIRVMPD  693 (702)
T ss_pred             eeEEEEEEEEeCCCCHHHHHHHHHHHCCCCeEEEEEEEc-CCCEEEEEEEEEECC----HHHHHHHHHHHhCCCC
Confidence            445688999999999999999999999999999996433 346778888888763    5677776666554333

>cd04913 ACT_AKii-LysC-BS-like_1 ACT domains of the lysine-sensitive aspartokinase isoenzyme AKII of Bacillus subtilis (BS) strain 168 and related proteins

Probab=95.36  E-value=0.1  Score=37.49  Aligned_cols=66  Identities=18%  Similarity=0.138  Sum_probs=43.3

Q ss_pred             EEEEEc-CCccchHHHHHHHHHhcCCeEeEeeeeccCCCCeEEEEEEEEeCCCCCCHHHHHHHHHHHHhhhh
Q 021895           44 IHVFHC-PDEVGIVAKLSECIASRGGNILAADVFVPEKKNVFYSRSEFIFDPIKWPREQMDEDFFKLSKMFN  114 (306)
Q Consensus        44 ILTViG-pDRpGIVAaVS~~LAe~G~NIlD~sQ~id~l~G~FfMrmeVdv~~~~~~~eeLreaL~~la~elg  114 (306)
                      .+++.| +|++|+.+++.+.|+++|+||.-+.|.... .+.  +.+.|.+++.  +.+...+.+.+..++++
T Consensus         3 ~v~v~~~~~~~g~~~~i~~~L~~~~I~i~~i~~~~~~-~~~--~~is~~v~~~--d~~~~~~~l~~~~~~~~   69 (75)
T cd04913           3 KITLRGVPDKPGVAAKIFGALAEANINVDMIVQNVSR-DGT--TDISFTVPKS--DLKKALAVLEKLKKELG   69 (75)
T ss_pred             EEEECCCCCCCcHHHHHHHHHHHcCCeEEEEEeCCCC-CCc--EEEEEEecHH--HHHHHHHHHHHHHHHcC
Confidence            344443 689999999999999999999988885432 222  3444544432  45555666666555554

This CD includes the N-terminal of the two ACT domains of the lysine-sensitive aspartokinase isoenzyme AKII of Bacillus subtilis (BS) strain 168, and the lysine plus threonine-sensitive aspartokinase of Corynebacterium glutamicum, and related sequences. In B. subtilis 168, the regulation of the diaminopimelate (Dap)-lysine biosynthetic pathway involves dual control by Dap and lysine, effected through separate Dap- and lysine-sensitive aspartokinase isoenzymes. The B. subtilis 168 AKII is induced by methionine and repressed and inhibited by lysine. Although Corynebacterium glutamicum is known to contain a single aspartokinase, both the succinylase and dehydrogenase variant pathways of DAP-lysine synthesis operate simultaneously in this organism. In corynebacteria and other various Gram-positive bacteria, the DAP-lysine pathway is fee

>COG4492 PheB ACT domain-containing protein [General function prediction only]

Probab=95.32  E-value=0.069  Score=46.91  Aligned_cols=66  Identities=15%  Similarity=0.099  Sum_probs=53.1

Q ss_pred             cEEEEEEcCCccchHHHHHHHHHhcCCeEeEeeeeccCCCCeEEEEEEEEeCCCCCCHHHHHHHHHH
Q 021895           42 HGIHVFHCPDEVGIVAKLSECIASRGGNILAADVFVPEKKNVFYSRSEFIFDPIKWPREQMDEDFFK  108 (306)
Q Consensus        42 k~ILTViGpDRpGIVAaVS~~LAe~G~NIlD~sQ~id~l~G~FfMrmeVdv~~~~~~~eeLreaL~~  108 (306)
                      .+-|.+.=.||.|+.++|=..+|+.+|||+-++|++ +.+|+-...+-++......+.+.+-+.|.+
T Consensus        72 i~TL~l~ledr~G~LS~vLd~iA~~~~nvLTI~Q~i-pl~g~Anvtlsi~~ssm~~~V~~ii~kl~k  137 (150)
T COG4492          72 IITLSLSLEDRVGILSDVLDVIAREEINVLTIHQTI-PLQGRANVTLSIDTSSMEKDVDKIIEKLRK  137 (150)
T ss_pred             EEEEEEEEhhhhhhHHHHHHHHHHhCCcEEEEeccc-ccCceeeEEEEEEchhhhhhHHHHHHHHhc
Confidence            356777889999999999999999999999999986 578998888888876655555555555543

>PRK05092 PII uridylyl-transferase; Provisional

Probab=94.95  E-value=0.12  Score=56.41  Aligned_cols=71  Identities=10%  Similarity=0.021  Sum_probs=48.1

Q ss_pred             CCcccEEEEEEcCCccchHHHHHHHHHhcCCeEeEeeeeccCCCCeEEEEEEEEe-CCCCC----CHHHHHHHHHHHH
Q 021895           38 PTLTHGIHVFHCPDEVGIVAKLSECIASRGGNILAADVFVPEKKNVFYSRSEFIF-DPIKW----PREQMDEDFFKLS  110 (306)
Q Consensus        38 p~~~k~ILTViGpDRpGIVAaVS~~LAe~G~NIlD~sQ~id~l~G~FfMrmeVdv-~~~~~----~~eeLreaL~~la  110 (306)
                      +.....+|.|.|+||||+++.|+++|+++|+||.+..-.+.  +++-.=.+.|.- .+...    ..++++++|.+..
T Consensus       839 ~s~~~t~i~I~~~DrpGLl~~I~~~l~~~gl~I~~A~I~T~--~~~~~D~F~v~d~~g~~i~~~~~~~~l~~~L~~~L  914 (931)
T PRK05092        839 ASNRFTVIEVNGRDRPGLLYDLTRALSDLNLNIASAHIATY--GERAVDVFYVTDLFGLKITNEARQAAIRRALLAAL  914 (931)
T ss_pred             CCCCeEEEEEEECCcCcHHHHHHHHHHHCCceEEEEEEEEc--CCEEEEEEEEeCCCCCcCCCHHHHHHHHHHHHHHh
Confidence            34456899999999999999999999999999999888754  344222333322 11111    1345666666544

>PRK03059 PII uridylyl-transferase; Provisional

Probab=94.92  E-value=0.2  Score=54.55  Aligned_cols=56  Identities=14%  Similarity=0.140  Sum_probs=43.2

Q ss_pred             CCCCCcc-cCCCCCCcccEEEEEEcCCccchHHHHHHHHHhcCCeEeEeeeeccCCCCe
Q 021895           26 KFPGEPI-ESSVSPTLTHGIHVFHCPDEVGIVAKLSECIASRGGNILAADVFVPEKKNV   83 (306)
Q Consensus        26 ~~~~~~~-~~~~~p~~~k~ILTViGpDRpGIVAaVS~~LAe~G~NIlD~sQ~id~l~G~   83 (306)
                      .|+.+|. +....+.....+|.|.++||||+.|.|++.|+++|+||.+..-++.  +|+
T Consensus       769 ~~~~~~~V~~~~~~~~~~T~i~V~a~DrpGLLa~Ia~~L~~~~l~I~~AkI~T~--~~~  825 (856)
T PRK03059        769 HFPITPRVDLRPDERGQYYILSVSANDRPGLLYAIARVLAEHRVSVHTAKINTL--GER  825 (856)
T ss_pred             CCCCCceEEEEEcCCCCEEEEEEEeCCcchHHHHHHHHHHHCCCeEEEEEEeec--CCE
Confidence            3444432 2334555677899999999999999999999999999999877654  454

>TIGR01127 ilvA_1Cterm threonine dehydratase, medium form

Probab=94.74  E-value=0.12  Score=50.21  Aligned_cols=73  Identities=15%  Similarity=-0.011  Sum_probs=47.6

Q ss_pred             CCCCCcccEEEEEEcCCccchHHHHHHHHHhcCCeEeEeeee---ccCCCCeEEEEEEEEeCCCCCCHHHHHHHHHH
Q 021895           35 SVSPTLTHGIHVFHCPDEVGIVAKLSECIASRGGNILAADVF---VPEKKNVFYSRSEFIFDPIKWPREQMDEDFFK  108 (306)
Q Consensus        35 ~~~p~~~k~ILTViGpDRpGIVAaVS~~LAe~G~NIlD~sQ~---id~l~G~FfMrmeVdv~~~~~~~eeLreaL~~  108 (306)
                      .+..+...+.+++.=|||||..+++++.++++|+||+++...   .....+.-...+.++..+ ....+++.+.|++
T Consensus       298 gl~~~gr~~~l~v~l~D~pG~L~~v~~~i~~~~~NI~~i~~~r~~~~~~~~~~~v~v~vet~~-~~~~~~i~~~L~~  373 (380)
T TIGR01127       298 GLVKSGRKVRIETVLPDRPGALYHLLESIAEARANIVKIDHDRLSKEIPPGFAMVEITLETRG-KEHLDEILKILRD  373 (380)
T ss_pred             HHHhCCCEEEEEEEeCCCCCHHHHHHHHHhcCCCcEEEEEeeccccCCCCceEEEEEEEEeCC-HHHHHHHHHHHHH
Confidence            344455666778888999999999999999999999999654   111124433444444432 1234455555554

A form of threonine dehydratase with two copies of the C-terminal domain Pfam:PF00585 is described by TIGR01124. This model describes a phylogenetically distinct form with a single copy of pfam00585. This form branches with the catabolic threonine dehydratase of E. coli; many members are designated as catabolic for this reason. However, the catabolic form lacks any pfam00585 domain. Many members of this model are found in species with other Ile biosynthetic enzymes.

>PRK13581 D-3-phosphoglycerate dehydrogenase; Provisional

Probab=94.72  E-value=0.041  Score=56.45  Aligned_cols=64  Identities=16%  Similarity=0.121  Sum_probs=46.0

Q ss_pred             ccEEEEEEcCCccchHHHHHHHHHhcCCeEeEeeeeccCCCCeEEEEEEEEeCCCCCCHHHHHHHHHH
Q 021895           41 THGIHVFHCPDEVGIVAKLSECIASRGGNILAADVFVPEKKNVFYSRSEFIFDPIKWPREQMDEDFFK  108 (306)
Q Consensus        41 ~k~ILTViGpDRpGIVAaVS~~LAe~G~NIlD~sQ~id~l~G~FfMrmeVdv~~~~~~~eeLreaL~~  108 (306)
                      ....|.+...|+||+|+.|++.|+++|+||-.++..-...+|.-.|.+++|-   ..+ +++.+.+++
T Consensus       451 ~~~~li~~~~D~pG~I~~v~~~L~~~~iNIa~m~~~r~~~g~~al~~i~~D~---~v~-~~~l~~i~~  514 (526)
T PRK13581        451 EGHMLIIRNRDRPGVIGKVGTLLGEAGINIAGMQLGRREAGGEALMVLSVDD---PVP-EEVLEELRA  514 (526)
T ss_pred             CceEEEEEeCCcCChhHHHHHHHhhcCCCchhcEeccCCCCCeEEEEEECCC---CCC-HHHHHHHhc
Confidence            3355566679999999999999999999999987754344567777777763   233 445555554

>PRK05007 PII uridylyl-transferase; Provisional

Probab=94.62  E-value=0.21  Score=54.58  Aligned_cols=53  Identities=13%  Similarity=0.125  Sum_probs=41.7

Q ss_pred             CCCcccEEEEEEcCCccchHHHHHHHHHhcCCeEeEeeeeccCCCCeEEEEEEE
Q 021895           37 SPTLTHGIHVFHCPDEVGIVAKLSECIASRGGNILAADVFVPEKKNVFYSRSEF   90 (306)
Q Consensus        37 ~p~~~k~ILTViGpDRpGIVAaVS~~LAe~G~NIlD~sQ~id~l~G~FfMrmeV   90 (306)
                      .+......|+|.++||+|+.+.|+++|+.+|+||.+.+-++. .+|+..=.+.|
T Consensus       696 ~~~~~~t~V~V~a~DrpGLfa~Ia~~La~~~L~I~~A~I~T~-~dg~alD~F~V  748 (884)
T PRK05007        696 QATRGGTEIFIWSPDRPYLFAAVCAELDRRNLSVHDAQIFTS-RDGMAMDTFIV  748 (884)
T ss_pred             cCCCCeEEEEEEecCCcCHHHHHHHHHHHCCCEEEEEEEEEc-CCCeEEEEEEE
Confidence            344567899999999999999999999999999999986654 24665433444

>PRK01759 glnD PII uridylyl-transferase; Provisional

Probab=94.61  E-value=0.2  Score=54.44  Aligned_cols=54  Identities=11%  Similarity=0.115  Sum_probs=42.1

Q ss_pred             CCCcccEEEEEEcCCccchHHHHHHHHHhcCCeEeEeeeeccCCCCeEEEEEEEE
Q 021895           37 SPTLTHGIHVFHCPDEVGIVAKLSECIASRGGNILAADVFVPEKKNVFYSRSEFI   91 (306)
Q Consensus        37 ~p~~~k~ILTViGpDRpGIVAaVS~~LAe~G~NIlD~sQ~id~l~G~FfMrmeVd   91 (306)
                      .+......|+|.++||+|+.|.|+++|+.+|+||.+.+-++. .+|+..=.+.|.
T Consensus       672 ~~~~~~t~V~V~~~DrpGLfa~Ia~~L~~~~L~I~~A~I~T~-~~g~alD~F~V~  725 (854)
T PRK01759        672 RFSRGGTEIFIYCQDQANLFLKVVSTIGAKKLSIHDAQIITS-QDGYVLDSFIVT  725 (854)
T ss_pred             cCCCCeEEEEEEecCCccHHHHHHHHHHHCCCeEEEEEEEEc-cCCEEEEEEEEe
Confidence            444556799999999999999999999999999999886543 346644444443

>PRK04374 PII uridylyl-transferase; Provisional

Probab=94.56  E-value=0.14  Score=55.95  Aligned_cols=63  Identities=17%  Similarity=0.252  Sum_probs=46.7

Q ss_pred             CCCcccCC--CCCCcccEEEEEEcCCccchHHHHHHHHHhcCCeEeEeeeeccCCCCeEEEEEEEE
Q 021895           28 PGEPIESS--VSPTLTHGIHVFHCPDEVGIVAKLSECIASRGGNILAADVFVPEKKNVFYSRSEFI   91 (306)
Q Consensus        28 ~~~~~~~~--~~p~~~k~ILTViGpDRpGIVAaVS~~LAe~G~NIlD~sQ~id~l~G~FfMrmeVd   91 (306)
                      .++|+.-.  ..|...-.-|+|.++||+|+.|.|+++|+.+|+||++.+-++. ..|+-.=.+.|.
T Consensus       674 ~~~~~v~~~~~~~~~~~~~v~v~~~d~~gLFa~i~g~l~~~~lnI~~A~i~t~-~~g~~ld~f~V~  738 (869)
T PRK04374        674 IGQTLVKARRAVPDNDALEVFVYSPDRDGLFAAIVATLDRKGYGIHRARVLDA-PHDAIFDVFEVL  738 (869)
T ss_pred             CCCCeEEEeeeccCCCeEEEEEEeCCCccHHHHHHHHHHHCCCeEEEEEEEEc-CCCEEEEEEEEe
Confidence            44454332  2455566789999999999999999999999999999988864 346644445554

>cd04904 ACT_AAAH ACT domain of the nonheme iron-dependent, aromatic amino acid hydroxylases (AAAH)

Probab=94.51  E-value=0.17  Score=38.54  Aligned_cols=61  Identities=16%  Similarity=0.212  Sum_probs=40.3

Q ss_pred             EEEcCCccchHHHHHHHHHhcCCeEeEeeeeccCC-CCeEEEEEEEEeCCCCCCHHHHHHHHHHHHh
Q 021895           46 VFHCPDEVGIVAKLSECIASRGGNILAADVFVPEK-KNVFYSRSEFIFDPIKWPREQMDEDFFKLSK  111 (306)
Q Consensus        46 TViGpDRpGIVAaVS~~LAe~G~NIlD~sQ~id~l-~G~FfMrmeVdv~~~~~~~eeLreaL~~la~  111 (306)
                      .+.-+|+||-.+.|=+.++++|+|+..+...-... .+.|..-++++.     ..+.+++.++.+.+
T Consensus         4 ~f~l~~~pG~L~~vL~~f~~~~iNlt~IeSRP~~~~~~~y~Ffvd~~~-----~~~~~~~~l~~L~~   65 (74)
T cd04904           4 IFSLKEEVGALARALKLFEEFGVNLTHIESRPSRRNGSEYEFFVDCEV-----DRGDLDQLISSLRR   65 (74)
T ss_pred             EEEeCCCCcHHHHHHHHHHHCCCcEEEEECCCCCCCCceEEEEEEEEc-----ChHHHHHHHHHHHH
Confidence            34448999999999999999999999998863222 223333344442     23456666666543

ACT domain of the nonheme iron-dependent, aromatic amino acid hydroxylases (AAAH): Phenylalanine hydroxylases (PAH), tyrosine hydroxylases (TH) and tryptophan hydroxylases (TPH), both peripheral (TPH1) and neuronal (TPH2) enzymes. This family of enzymes shares a common catalytic mechanism, in which dioxygen is used by an active site containing a single, reduced iron atom to hydroxylate an unactivated aromatic substrate, concomitant with a two-electron oxidation of tetrahydropterin (BH4) cofactor to its quinonoid dihydropterin form. PAH catalyzes the hydroxylation of L-Phe to L-Tyr, the first step in the catabolic degradation of L-Phe; TH catalyses the hydroxylation of L-Tyr to 3,4-dihydroxyphenylalanine, the rate limiting step in the biosynthesis of catecholamines; and TPH catalyses the hydroxylation of L-Trp to 5-hydroxytryptophan, the rate limiting step in the biosynthesis of 5-hydroxy

>TIGR01327 PGDH D-3-phosphoglycerate dehydrogenase

Probab=94.46  E-value=0.042  Score=56.39  Aligned_cols=62  Identities=16%  Similarity=0.142  Sum_probs=44.8

Q ss_pred             EEEEEEcCCccchHHHHHHHHHhcCCeEeEeeeeccCCCCeEEEEEEEEeCCCCCCHHHHHHHHHH
Q 021895           43 GIHVFHCPDEVGIVAKLSECIASRGGNILAADVFVPEKKNVFYSRSEFIFDPIKWPREQMDEDFFK  108 (306)
Q Consensus        43 ~ILTViGpDRpGIVAaVS~~LAe~G~NIlD~sQ~id~l~G~FfMrmeVdv~~~~~~~eeLreaL~~  108 (306)
                      ..+.+...|+||+|+.|++.|.++++||-.++-.-...+|.-.|.+++|-+   .+ +++.+.+.+
T Consensus       452 ~~li~~~~D~pG~I~~v~~~L~~~~iNIa~m~~~R~~~g~~al~~i~~D~~---v~-~~~l~~i~~  513 (525)
T TIGR01327       452 IMLIILHLDKPGVIGKVGTLLGTAGINIASMQLGRKEKGGEALMLLSLDQP---VP-DEVLEEIKA  513 (525)
T ss_pred             cEEEEEecCcCCcchHHHhHHhhcCCChHHcEeecCCCCCeEEEEEEcCCC---CC-HHHHHHHhc
Confidence            445556699999999999999999999988776544445777777877732   33 444455543

This model represents a long form of D-3-phosphoglycerate dehydrogenase, the serA gene of one pathway of serine biosynthesis. Shorter forms, scoring between trusted and noise cutoff, include SerA from E. coli.

>cd04931 ACT_PAH ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, phenylalanine hydroxylases (PAH)

Probab=94.43  E-value=0.45  Score=38.32  Aligned_cols=69  Identities=16%  Similarity=0.097  Sum_probs=47.2

Q ss_pred             EEEEEEcCCccchHHHHHHHHHhcCCeEeEeeeeccCC-CCeEEEEEEEEeCCCCCCHHHHHHHHHHHHhhhhc
Q 021895           43 GIHVFHCPDEVGIVAKLSECIASRGGNILAADVFVPEK-KNVFYSRSEFIFDPIKWPREQMDEDFFKLSKMFNA  115 (306)
Q Consensus        43 ~ILTViGpDRpGIVAaVS~~LAe~G~NIlD~sQ~id~l-~G~FfMrmeVdv~~~~~~~eeLreaL~~la~elgl  115 (306)
                      .-|.+..+|++|-.+.+=+.++++|+|+..+...-... .+.|..-++++..    ..+.+++.++.+.+.+++
T Consensus        15 tslif~l~~~pGsL~~vL~~Fa~~~INLt~IeSRP~~~~~~~Y~FfVDieg~----~~~~~~~~l~~L~~~~~~   84 (90)
T cd04931          15 ISLIFSLKEEVGALAKVLRLFEEKDINLTHIESRPSRLNKDEYEFFINLDKK----SAPALDPIIKSLRNDIGA   84 (90)
T ss_pred             EEEEEEcCCCCcHHHHHHHHHHHCCCCEEEEEeccCCCCCceEEEEEEEEcC----CCHHHHHHHHHHHHHhCC
Confidence            33445559999999999999999999999998853221 2223323334322    237788888888777764

ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, phenylalanine hydroxylases (PAH). PAH catalyzes the hydroxylation of L-Phe to L-Tyr, the first step in the catabolic degradation of L-Phe. In PAH, an autoregulatory sequence, N-terminal of the ACT domain, extends across the catalytic domain active site and regulates the enzyme by intrasteric regulation. It appears that the activation by L-Phe induces a conformational change that converts the enzyme to a high-affinity and high-activity state. Modulation of activity is achieved through inhibition by BH4 and activation by phosphorylation of serine residues of the autoregulatory region. The molecular basis for the cooperative activation process is not fully understood yet. Members of this CD belong to the superfamily of ACT regulatory domains.

>PRK08198 threonine dehydratase; Provisional

Probab=94.19  E-value=0.092  Score=51.57  Aligned_cols=44  Identities=27%  Similarity=0.234  Sum_probs=37.3

Q ss_pred             cCCCCCCcccEEEEEEcCCccchHHHHHHHHHhcCCeEeEeeee
Q 021895           33 ESSVSPTLTHGIHVFHCPDEVGIVAKLSECIASRGGNILAADVF   76 (306)
Q Consensus        33 ~~~~~p~~~k~ILTViGpDRpGIVAaVS~~LAe~G~NIlD~sQ~   76 (306)
                      +..+......+-+.|.=+|+||..+++.+.+++.|+||+++++.
T Consensus       318 ~~gl~~~gr~~~l~v~l~D~PG~L~~ll~~i~~~g~NI~~i~~~  361 (404)
T PRK08198        318 ERGLVAAGRYLKLRVRLPDRPGQLAKLLSIIAELGANVIDVDHD  361 (404)
T ss_pred             HhhhhhcCCEEEEEEEeCCCCCHHHHHHHHHhhCCCceEEEEEE
Confidence            44445566667788888999999999999999999999999885

>COG4747 ACT domain-containing protein [General function prediction only]

Probab=94.02  E-value=2.2  Score=37.19  Aligned_cols=121  Identities=17%  Similarity=0.141  Sum_probs=73.2

Q ss_pred             EEEEEcCCccchHHHHHHHHHhcCCeEeEeeeeccCCCCeEE-EEEEEEeCCCCCCHHHHHHHHHHHHhhhhcccceeee
Q 021895           44 IHVFHCPDEVGIVAKLSECIASRGGNILAADVFVPEKKNVFY-SRSEFIFDPIKWPREQMDEDFFKLSKMFNAMRSVVRV  122 (306)
Q Consensus        44 ILTViGpDRpGIVAaVS~~LAe~G~NIlD~sQ~id~l~G~Ff-MrmeVdv~~~~~~~eeLreaL~~la~elgl~~~~~rl  122 (306)
                      =|++.-..|||-.+.+++.|.++|+||-..+-   .++|.|- .||.|+-|      ++-.+.|++.    |.   +.+.
T Consensus         5 QISvFlENk~GRL~~~~~~L~eagINiRA~ti---Adt~dFGIiRmvV~~~------d~A~~~Lee~----gF---~Vr~   68 (142)
T COG4747           5 QISVFLENKPGRLASVANKLKEAGINIRAFTI---ADTGDFGIIRMVVDRP------DEAHSVLEEA----GF---TVRE   68 (142)
T ss_pred             EEEEEecCCcchHHHHHHHHHHcCCceEEEEe---ccccCcceEEEEcCCh------HHHHHHHHHC----Cc---EEEe
Confidence            36778899999999999999999999988876   4467775 67777532      3345555532    22   3444


Q ss_pred             cCCCCCceEEEEEeCCcchHHHHHHhhhcCCCCeE-EEEEeeCCCCC-------CChhHHHHHHhCCCCEE
Q 021895          123 PDIDPKYKVAVLASKQEHCLVDFLYGWQEGKLPVE-ITCVISNHDRG-------PNSHVIRFLERHGIPYH  185 (306)
Q Consensus       123 ~~~~~~~riavl~S~~g~~L~~ll~~~~~g~l~~~-I~~Visn~~~~-------~~~~~~~~A~~~gIp~~  185 (306)
                      ++     =+||=.-.....|..++.....-.++.+ |.+-++-.++.       .-..+++..+..||++.
T Consensus        69 ~d-----VlaVEmeD~PG~l~~I~~vl~d~diNldYiYAFv~ek~KAlli~r~ed~d~~~~aLed~gi~~~  134 (142)
T COG4747          69 TD-----VLAVEMEDVPGGLSRIAEVLGDADINLDYIYAFVTEKQKALLIVRVEDIDRAIKALEDAGIKLI  134 (142)
T ss_pred             ee-----EEEEEecCCCCcHHHHHHHHhhcCcCceeeeeeeecCceEEEEEEhhHHHHHHHHHHHcCCeec
Confidence            33     3444444444456666666555544432 33444333211       01245667788888864

>TIGR01693 UTase_glnD [Protein-PII] uridylyltransferase

Probab=93.78  E-value=0.33  Score=52.48  Aligned_cols=43  Identities=21%  Similarity=0.215  Sum_probs=37.0

Q ss_pred             cccEEEEEEcCCccchHHHHHHHHHhcCCeEeEeeeeccCCCCe
Q 021895           40 LTHGIHVFHCPDEVGIVAKLSECIASRGGNILAADVFVPEKKNV   83 (306)
Q Consensus        40 ~~k~ILTViGpDRpGIVAaVS~~LAe~G~NIlD~sQ~id~l~G~   83 (306)
                      .....|+|.++||+|+.+.|++.|+.+|+||.+.+-++.. +|+
T Consensus       666 ~~~t~i~V~~~DrpgLla~i~~~L~~~~l~I~~A~I~tt~-~g~  708 (850)
T TIGR01693       666 SGGTEVFIYAPDQPGLFAKVAGALAMLSLSVHDAQVNTTK-DGV  708 (850)
T ss_pred             CCeEEEEEEeCCCCcHHHHHHHHHHHCCCeEEEEEEEEec-CCE
Confidence            4567899999999999999999999999999999887432 454

This model describes GlnD, the uridylyltransferase/uridylyl-removing enzyme for the nitrogen regulatory protein PII. Not all homologs of PII share the property of uridylyltransferase modification on the characteristic Tyr residue (see Prosite pattern PS00496 and document PDOC00439), but the modification site is preserved in the PII homolog of all species with a member of this family.

>PRK03059 PII uridylyl-transferase; Provisional

Probab=93.76  E-value=0.38  Score=52.45  Aligned_cols=55  Identities=18%  Similarity=0.210  Sum_probs=42.8

Q ss_pred             CCCCcccEEEEEEcCCccchHHHHHHHHHhcCCeEeEeeeeccCCCCeEEEEEEEE
Q 021895           36 VSPTLTHGIHVFHCPDEVGIVAKLSECIASRGGNILAADVFVPEKKNVFYSRSEFI   91 (306)
Q Consensus        36 ~~p~~~k~ILTViGpDRpGIVAaVS~~LAe~G~NIlD~sQ~id~l~G~FfMrmeVd   91 (306)
                      ..+.....-|+|.++||+|+-|.++++|+.+|.||.+.+-++.. +|.-.=.+.|.
T Consensus       672 ~~~~~~~~~v~i~~~d~~gLFa~i~g~l~~~~l~I~~A~i~t~~-~g~~ld~f~V~  726 (856)
T PRK03059        672 LSPAGEGLQVMVYTPDQPDLFARICGYFDRAGFSILDARVHTTR-HGYALDTFQVL  726 (856)
T ss_pred             ecCCCCeEEEEEEecCCCcHHHHHHHHHHHCCCceeeeEEEEcC-CCeEEEEEEEe
Confidence            34455567899999999999999999999999999999887543 45533344443

>PRK05007 PII uridylyl-transferase; Provisional

Probab=93.55  E-value=0.16  Score=55.54  Aligned_cols=40  Identities=18%  Similarity=0.207  Sum_probs=35.3

Q ss_pred             CCcccEEEEEEcCCccchHHHHHHHHHhcCCeEeEeeeec
Q 021895           38 PTLTHGIHVFHCPDEVGIVAKLSECIASRGGNILAADVFV   77 (306)
Q Consensus        38 p~~~k~ILTViGpDRpGIVAaVS~~LAe~G~NIlD~sQ~i   77 (306)
                      ......+|.|.++||||+.+.|++.|++.|+||....-.+
T Consensus       804 ~s~~~TvlEV~a~DRpGLL~~I~~~l~~~~l~I~~AkI~T  843 (884)
T PRK05007        804 HTDRRSYMELIALDQPGLLARVGKIFADLGISLHGARITT  843 (884)
T ss_pred             CCCCeEEEEEEeCCchHHHHHHHHHHHHCCcEEEEEEEec
Confidence            3466789999999999999999999999999999966654

>PRK00275 glnD PII uridylyl-transferase; Provisional

Probab=93.53  E-value=0.35  Score=52.94  Aligned_cols=52  Identities=10%  Similarity=0.044  Sum_probs=41.2

Q ss_pred             CCcccEEEEEEcCCccchHHHHHHHHHhcCCeEeEeeeeccCCCCeEEEEEEEE
Q 021895           38 PTLTHGIHVFHCPDEVGIVAKLSECIASRGGNILAADVFVPEKKNVFYSRSEFI   91 (306)
Q Consensus        38 p~~~k~ILTViGpDRpGIVAaVS~~LAe~G~NIlD~sQ~id~l~G~FfMrmeVd   91 (306)
                      +.....+|.|.++||||+.+.|+++|+++|+||.+..-++.  +|+-.=.+.|.
T Consensus       810 ~~~~~T~i~V~a~DrpGLLa~I~~~L~~~~l~I~~AkI~T~--g~~v~D~F~V~  861 (895)
T PRK00275        810 AQRPVTVLEIIAPDRPGLLARIGRIFLEFDLSLQNAKIATL--GERVEDVFFIT  861 (895)
T ss_pred             CCCCeEEEEEEECCCCCHHHHHHHHHHHCCCEEEEeEEEec--CCEEEEEEEEE
Confidence            34456799999999999999999999999999999887654  45533344443

>PRK04374 PII uridylyl-transferase; Provisional

Probab=93.52  E-value=0.47  Score=51.96  Aligned_cols=53  Identities=11%  Similarity=0.060  Sum_probs=42.0

Q ss_pred             CCCCcccEEEEEEcCCccchHHHHHHHHHhcCCeEeEeeeeccCCCCeEEEEEEE
Q 021895           36 VSPTLTHGIHVFHCPDEVGIVAKLSECIASRGGNILAADVFVPEKKNVFYSRSEF   90 (306)
Q Consensus        36 ~~p~~~k~ILTViGpDRpGIVAaVS~~LAe~G~NIlD~sQ~id~l~G~FfMrmeV   90 (306)
                      ..+.....+|.|.++||||+.+.|+++|+++|+||.+..-++.  +++-.=.+.|
T Consensus       790 ~~~~~~~t~leI~a~DrpGLLa~Ia~~l~~~~l~I~~AkI~T~--g~~a~D~F~V  842 (869)
T PRK04374        790 ESAGGRRTRISLVAPDRPGLLADVAHVLRMQHLRVHDARIATF--GERAEDQFQI  842 (869)
T ss_pred             ecCCCCeEEEEEEeCCcCcHHHHHHHHHHHCCCeEEEeEEEec--CCEEEEEEEE
Confidence            3455567899999999999999999999999999999887754  4443333444

>cd04892 ACT_AK-like_2 ACT domains C-terminal to the catalytic domain of aspartokinase (AK; 4-L-aspartate-4-phosphotransferase)

Probab=93.47  E-value=0.68  Score=31.91  Aligned_cols=34  Identities=18%  Similarity=0.186  Sum_probs=30.4

Q ss_pred             EEEEEcC---CccchHHHHHHHHHhcCCeEeEeeeec
Q 021895           44 IHVFHCP---DEVGIVAKLSECIASRGGNILAADVFV   77 (306)
Q Consensus        44 ILTViGp---DRpGIVAaVS~~LAe~G~NIlD~sQ~i   77 (306)
                      +|+++|.   +++|+++++.+.|+++|+|+.-+.|..
T Consensus         2 ~i~i~g~~~~~~~~~~~~i~~~l~~~~i~v~~i~~~~   38 (65)
T cd04892           2 LVSVVGAGMRGTPGVAARIFSALAEAGINIIMISQGS   38 (65)
T ss_pred             EEEEECCCCCCCccHHHHHHHHHHHCCCcEEEEEcCC
Confidence            5788877   889999999999999999999998853

This CD includes the second of two ACT domains C-terminal to the catalytic domain of aspartokinase (AK; 4-L-aspartate-4-phosphotransferase). The exception in this group, is the inclusion of the first ACT domain of the bifunctional aspartokinase - homoserine dehydrogenase-like enzyme group (ACT_AKi-HSDH-ThrA-like_1) which includes the monofunctional, threonine-sensitive, aspartokinase found in Methanococcus jannaschii and other related archaeal species. AK catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. AK is the first enzyme in the pathway of the biosynthesis of the aspartate family of amino acids (lysine, threonine, methionine, and isoleucine) and the bacterial cell wall component, meso-diaminopimelate. One mechanism for the regulation of this pathway is by the production of several isoenzymes of AK with different repressors an

>PRK00275 glnD PII uridylyl-transferase; Provisional

Probab=93.46  E-value=0.29  Score=53.59  Aligned_cols=50  Identities=12%  Similarity=0.075  Sum_probs=40.2

Q ss_pred             ccEEEEEEcCCccchHHHHHHHHHhcCCeEeEeeeeccCCCCeEEEEEEEE
Q 021895           41 THGIHVFHCPDEVGIVAKLSECIASRGGNILAADVFVPEKKNVFYSRSEFI   91 (306)
Q Consensus        41 ~k~ILTViGpDRpGIVAaVS~~LAe~G~NIlD~sQ~id~l~G~FfMrmeVd   91 (306)
                      .-..|+|.|+||+|+-+.++++|+.+|+||.+.+-++. ..|+..=.+.|.
T Consensus       703 ~~t~V~V~~~DrpgLFa~i~g~L~~~~lnI~~A~I~Tt-~dg~alD~F~V~  752 (895)
T PRK00275        703 GGTQIFIYAPDQHDFFAATVAAMDQLNLNIHDARIITS-SSQFTLDTYIVL  752 (895)
T ss_pred             CeEEEEEEeCCCCcHHHHHHHHHHHCCCeEEEEEEEEc-CCCeEEEEEEEe
Confidence            45689999999999999999999999999999987654 346644445553

>COG0440 IlvH Acetolactate synthase, small (regulatory) subunit [Amino acid transport and metabolism]

Probab=93.46  E-value=0.72  Score=41.49  Aligned_cols=74  Identities=20%  Similarity=0.214  Sum_probs=54.5

Q ss_pred             cccEEEEEEcCCccchHHHHHHHHHhcCCeEeEeeeeccCCCCeEEEEEEEEeCCCCCCHHHHHHHHHHHHhhhhc
Q 021895           40 LTHGIHVFHCPDEVGIVAKLSECIASRGGNILAADVFVPEKKNVFYSRSEFIFDPIKWPREQMDEDFFKLSKMFNA  115 (306)
Q Consensus        40 ~~k~ILTViGpDRpGIVAaVS~~LAe~G~NIlD~sQ~id~l~G~FfMrmeVdv~~~~~~~eeLreaL~~la~elgl  115 (306)
                      .|+-++++.=.|.+|..+.|++++++.|.||..+.--.....+  .-||.+-+.+.....+++...|+++-.-+++
T Consensus         2 ~m~rilsvlv~ne~GvLsRv~glfsrRG~NIeSltv~~tE~~~--~SRiTivv~g~~~~~EQi~kQL~kLidV~kV   75 (163)
T COG0440           2 PMRRILSLLVENEPGVLSRVTGLFSRRGYNIESLTVGPTETPG--LSRITIVVSGDEQVLEQIIKQLNKLIDVLKV   75 (163)
T ss_pred             CceEEEEEEEECCCCeeehhhHHHHhcCcccceEEEEecCCCC--ceEEEEEEcCCcchHHHHHHHHHhhccceeE
Confidence            4677888888999999999999999999999998776444444  3344444443334578888888887665553

>PRK08818 prephenate dehydrogenase; Provisional

Probab=93.10  E-value=0.44  Score=47.42  Aligned_cols=50  Identities=16%  Similarity=0.059  Sum_probs=35.8

Q ss_pred             cEEEEEEcC-CccchHHHHHHHHHhcCCeEeEeeeeccCCCCeEEEEEEEEe
Q 021895           42 HGIHVFHCP-DEVGIVAKLSECIASRGGNILAADVFVPEKKNVFYSRSEFIF   92 (306)
Q Consensus        42 k~ILTViGp-DRpGIVAaVS~~LAe~G~NIlD~sQ~id~l~G~FfMrmeVdv   92 (306)
                      .+-|.+.=+ |+||.++.|.+.|+++|+||.+++-.-.+ .+.|..+++|.-
T Consensus       295 ~~~l~~~v~~d~pG~L~~vl~~la~~~INit~Ies~~~r-~~~y~f~i~~~~  345 (370)
T PRK08818        295 PLTLSVYLPEDRPGSLRTLLHVFEQHGVNLSSIHSSRTP-AGELHFRIGFEP  345 (370)
T ss_pred             ceEEEEECCCCCCChHHHHHHHHHHcCcccceEEEeccc-CceEEEEEEEec
Confidence            334444446 99999999999999999999998874333 344444566653

>COG0317 SpoT Guanosine polyphosphate pyrophosphohydrolases/synthetases [Signal transduction mechanisms / Transcription]

Probab=92.82  E-value=0.53  Score=50.62  Aligned_cols=70  Identities=11%  Similarity=0.097  Sum_probs=56.2

Q ss_pred             CcccEEEEEEcCCccchHHHHHHHHHhcCCeEeEeeeeccCCCCeEEEEEEEEeCCCCCCHHHHHHHHHHHHhhh
Q 021895           39 TLTHGIHVFHCPDEVGIVAKLSECIASRGGNILAADVFVPEKKNVFYSRSEFIFDPIKWPREQMDEDFFKLSKMF  113 (306)
Q Consensus        39 ~~~k~ILTViGpDRpGIVAaVS~~LAe~G~NIlD~sQ~id~l~G~FfMrmeVdv~~~~~~~eeLreaL~~la~el  113 (306)
                      ..-.+-|.|.+-||+|+.+.|++.|++.++||+.++...+ ..+.+.|.+.+.+.+    ..+|..-+.++-+.-
T Consensus       624 ~~f~~~i~v~~~~r~glL~~i~~~i~~~~~ni~~v~~~~~-~~~~~~~~~~i~v~n----~~~L~~i~~~l~~~~  693 (701)
T COG0317         624 QVYPVDIEIRAYDRSGLLRDVSQVLANEKINVLGVNTRSD-KDQFATMQFTIEVKN----LNHLGRVLARLKQLP  693 (701)
T ss_pred             cceEEEEEEEEccccchHHHHHHHHHhCCCceEEeecccc-CCceEEEEEEEEECc----HHHHHHHHHHHhcCC
Confidence            4556788999999999999999999999999999999765 456677888888764    567777666654433

>COG2102 Predicted ATPases of PP-loop superfamily [General function prediction only]

Probab=92.71  E-value=0.85  Score=42.88  Aligned_cols=80  Identities=26%  Similarity=0.294  Sum_probs=54.5

Q ss_pred             ceEEEEEeCCcchHHHHHHhhhcCCCCeEEEEEeeCCCCCC--------Ch-hHHHHHHhCCCCEEEeCCCC-CChH-HH
Q 021895          129 YKVAVLASKQEHCLVDFLYGWQEGKLPVEITCVISNHDRGP--------NS-HVIRFLERHGIPYHYLCAKE-NERE-EE  197 (306)
Q Consensus       129 ~riavl~S~~g~~L~~ll~~~~~g~l~~~I~~Visn~~~~~--------~~-~~~~~A~~~gIp~~~~~~k~-~~~e-~e  197 (306)
                      +|+++|.||.--...++..+++.|   .+|.+.++-++..+        |. .+...|+..|||+....... .++| ++
T Consensus         1 mk~~aL~SGGKDS~~Al~~a~~~G---~eV~~Ll~~~p~~~dS~m~H~~n~~~~~~~Ae~~gi~l~~~~~~g~~e~eve~   77 (223)
T COG2102           1 MKVIALYSGGKDSFYALYLALEEG---HEVVYLLTVKPENGDSYMFHTPNLELAELQAEAMGIPLVTFDTSGEEEREVEE   77 (223)
T ss_pred             CcEEEEEecCcHHHHHHHHHHHcC---CeeEEEEEEecCCCCeeeeeccchHHHHHHHHhcCCceEEEecCccchhhHHH
Confidence            478889998754455777788887   78888776654432        33 34556899999988877443 3334 56


Q ss_pred             HHHHhc--CCcEEEEe
Q 021895          198 LLELVQ--NTDFLVLA  211 (306)
Q Consensus       198 ~~~~v~--~~D~vVlA  211 (306)
                      +.+++.  +.|.||.-
T Consensus        78 L~~~l~~l~~d~iv~G   93 (223)
T COG2102          78 LKEALRRLKVDGIVAG   93 (223)
T ss_pred             HHHHHHhCcccEEEEc
Confidence            777776  67888763

>PRK06382 threonine dehydratase; Provisional

Probab=92.60  E-value=0.46  Score=47.11  Aligned_cols=73  Identities=16%  Similarity=0.086  Sum_probs=47.8

Q ss_pred             CCCCCcccEEEEEEcCCccchHHHHHHHHHhcCCeEeEeeeec---cCCCCeEEEEEEEEeCCCCCCHHHHHHHHHH
Q 021895           35 SVSPTLTHGIHVFHCPDEVGIVAKLSECIASRGGNILAADVFV---PEKKNVFYSRSEFIFDPIKWPREQMDEDFFK  108 (306)
Q Consensus        35 ~~~p~~~k~ILTViGpDRpGIVAaVS~~LAe~G~NIlD~sQ~i---d~l~G~FfMrmeVdv~~~~~~~eeLreaL~~  108 (306)
                      .+.-......+++.=+|+||..++|++.|+++|+||+++...-   ....+.-...+.++..+ ....+++.+.|++
T Consensus       323 ~~~~~~~~~rl~v~v~D~pG~L~~l~~ii~~~~~nI~~v~~~~~~~~~~~~~~~v~i~vet~~-~~~~~~v~~~L~~  398 (406)
T PRK06382        323 ELENLGQLVRIECNIPDRPGNLYRIANAIASNGGNIYHAEVDNLRKETPPGFQSVTFTVNVRG-QDHLDRILNALRE  398 (406)
T ss_pred             HHHhcCCEEEEEEEcCCCCCHHHHHHHHHhcCCCcEEEEEEeeccccCCCCcEEEEEEEEeCC-HHHHHHHHHHHHH
Confidence            3444556677888889999999999999999999999987641   12233333444444431 1123356666654

>PRK01759 glnD PII uridylyl-transferase; Provisional

Probab=92.58  E-value=0.17  Score=54.98  Aligned_cols=40  Identities=18%  Similarity=0.238  Sum_probs=35.3

Q ss_pred             CCcccEEEEEEcCCccchHHHHHHHHHhcCCeEeEeeeec
Q 021895           38 PTLTHGIHVFHCPDEVGIVAKLSECIASRGGNILAADVFV   77 (306)
Q Consensus        38 p~~~k~ILTViGpDRpGIVAaVS~~LAe~G~NIlD~sQ~i   77 (306)
                      ......+|.|.++||||+.+.|++.|++.|+||....-.+
T Consensus       779 ~s~~~T~iev~a~DrpGLL~~I~~~l~~~~l~i~~AkI~T  818 (854)
T PRK01759        779 EKQEQTEMELFALDRAGLLAQVSQVFSELNLNLLNAKITT  818 (854)
T ss_pred             CCCCeEEEEEEeCCchHHHHHHHHHHHHCCCEEEEEEEcc
Confidence            4456689999999999999999999999999999976654

>cd04922 ACT_AKi-HSDH-ThrA_2 ACT domains of the bifunctional enzyme aspartokinase (AK) - homoserine dehydrogenase (HSDH)

Probab=92.50  E-value=1.5  Score=31.27  Aligned_cols=34  Identities=21%  Similarity=0.133  Sum_probs=30.0

Q ss_pred             EEEEEEc---CCccchHHHHHHHHHhcCCeEeEeeee
Q 021895           43 GIHVFHC---PDEVGIVAKLSECIASRGGNILAADVF   76 (306)
Q Consensus        43 ~ILTViG---pDRpGIVAaVS~~LAe~G~NIlD~sQ~   76 (306)
                      .++++.|   ++.+|+.+++.+.|+++|+|+.-+.|.
T Consensus         2 ~~isvvg~~~~~~~~~~~~i~~~l~~~~I~v~~i~~~   38 (66)
T cd04922           2 SILALVGDGMAGTPGVAATFFSALAKANVNIRAIAQG   38 (66)
T ss_pred             eEEEEECCCCCCCccHHHHHHHHHHHCCCCEEEEEec
Confidence            4678888   488999999999999999999998884

This CD includes the second of two ACT domains of the bifunctional enzyme aspartokinase (AK) - homoserine dehydrogenase (HSDH). The ACT domains are positioned between the N-terminal catalytic domain of AK and the C-terminal HSDH domain found in bacteria (Escherichia coli (EC) ThrA) and higher plants (Zea mays AK-HSDH). AK and HSDH are the first and third enzymes in the biosynthetic pathway of the aspartate family of amino acids. AK catalyzes the phosphorylation of Asp to P-aspartyl phosphate. HSDH catalyzes the NADPH-dependent conversion of Asp 3-semialdehyde to homoserine. HSDH is the first committed reaction in the branch of the pathway that leads to Thr and Met. In E. coli, ThrA is subject to allosteric regulation by the end product L-threonine and the native enzyme is reported to be tetrameric. As with bacteria, plant AK and HSDH are feedback inhibited by pathwa

>COG2150 Predicted regulator of amino acid metabolism, contains ACT domain [General function prediction only]

Probab=92.48  E-value=0.26  Score=44.36  Aligned_cols=70  Identities=23%  Similarity=0.140  Sum_probs=48.6

Q ss_pred             CCCCCcccEEEEEEc--CCccchHHHHHHHHHhcCCeEeEeeeeccCCCCeEEEEEEEEeCCCCCCHHHHHHHHHH
Q 021895           35 SVSPTLTHGIHVFHC--PDEVGIVAKLSECIASRGGNILAADVFVPEKKNVFYSRSEFIFDPIKWPREQMDEDFFK  108 (306)
Q Consensus        35 ~~~p~~~k~ILTViG--pDRpGIVAaVS~~LAe~G~NIlD~sQ~id~l~G~FfMrmeVdv~~~~~~~eeLreaL~~  108 (306)
                      +++|.+---||++.-  .+.+||+|+|++.++++||+|.++-...+..++.=+.++.++-   ..+ .++-.+|.+
T Consensus        86 ~vA~~lG~gViei~~~~~~~pgi~A~V~~~iak~gi~Irqi~~~dpe~~~e~~l~IVte~---~iP-~~li~el~~  157 (167)
T COG2150          86 DVAPLLGLGVIEIYPEDARYPGILAGVASLIAKRGISIRQIISEDPELQEEPKLTIVTER---PIP-GDLIDELKK  157 (167)
T ss_pred             HHHHhcCCeEEEEEeccCCCccHHHHHHHHHHHcCceEEEEecCCcccCCCceEEEEEec---cCC-HHHHHHHhc
Confidence            466777777777775  5679999999999999999999876654445555555666652   222 345555543

>PRK06545 prephenate dehydrogenase; Validated

Probab=92.42  E-value=0.34  Score=47.10  Aligned_cols=37  Identities=19%  Similarity=0.311  Sum_probs=32.5

Q ss_pred             cccEEEEEEcCCccchHHHHHHHHHhcCCeEeEeeee
Q 021895           40 LTHGIHVFHCPDEVGIVAKLSECIASRGGNILAADVF   76 (306)
Q Consensus        40 ~~k~ILTViGpDRpGIVAaVS~~LAe~G~NIlD~sQ~   76 (306)
                      ..-+-|.|.=||+||.+|.|++.|++.|+||.|+.--
T Consensus       288 ~~~~~~~v~v~d~pg~~~~~~~~~~~~~i~i~~~~i~  324 (359)
T PRK06545        288 PSFYDLYVDVPDEPGVIARVTAILGEEGISIENLRIL  324 (359)
T ss_pred             CcceEEEEeCCCCCCHHHHHHHHHHHcCCCeecceee
Confidence            3457788888999999999999999999999998763

>KOG2663 consensus Acetolactate synthase, small subunit [Amino acid transport and metabolism]

Probab=92.19  E-value=0.24  Score=47.77  Aligned_cols=68  Identities=21%  Similarity=0.132  Sum_probs=53.0

Q ss_pred             ccEEEEEEcCCccchHHHHHHHHHhcCCeEeEeeeeccCCCCeEEEEEEEEeCCCCCCHHHHHHHHHHHH
Q 021895           41 THGIHVFHCPDEVGIVAKLSECIASRGGNILAADVFVPEKKNVFYSRSEFIFDPIKWPREQMDEDFFKLS  110 (306)
Q Consensus        41 ~k~ILTViGpDRpGIVAaVS~~LAe~G~NIlD~sQ~id~l~G~FfMrmeVdv~~~~~~~eeLreaL~~la  110 (306)
                      .+-++.+.=.|-+|++..|++.||.+|.||..+---..+....|.|.+.+.-.+  .-.+|.++.++++-
T Consensus        76 krHvinclVqnEpGvlsRisGvlAaRGfNIdSLvVc~tevk~LsrmTIVl~Gtd--~VveQa~rQiedlV  143 (309)
T KOG2663|consen   76 KRHVINCLVQNEPGVLSRISGVLAARGFNIDSLVVCLTEVKALSRMTIVLQGTD--GVVEQARRQIEDLV  143 (309)
T ss_pred             cceeEEEEecCCchHHHHHHHHHHhccCCchheeeechhhhhhhhceEEEeccH--HHHHHHHHHHHHhh
Confidence            456788888999999999999999999999987665556677898888886432  23667777776654

>cd04906 ACT_ThrD-I_1 First of two tandem C-terminal ACT domains of threonine dehydratase I (ThrD-I; L-threonine hydrolyase)

Probab=91.59  E-value=0.76  Score=35.81  Aligned_cols=32  Identities=22%  Similarity=0.262  Sum_probs=26.8

Q ss_pred             EEEEEEcCCccchHHHHHHHHHhcCCeEeEeeee
Q 021895           43 GIHVFHCPDEVGIVAKLSECIASRGGNILAADVF   76 (306)
Q Consensus        43 ~ILTViGpDRpGIVAaVS~~LAe~G~NIlD~sQ~   76 (306)
                      .++.|.=|||||-.+++.+.|+  ++||.+...-
T Consensus         2 ~vl~v~ipD~PG~L~~ll~~l~--~anI~~~~y~   33 (85)
T cd04906           2 ALLAVTIPERPGSFKKFCELIG--PRNITEFNYR   33 (85)
T ss_pred             eEEEEecCCCCcHHHHHHHHhC--CCceeEEEEE
Confidence            3567777999999999999999  7888887663

This CD includes the first of two tandem C-terminal ACT domains of threonine dehydratase I (ThrD-I; L-threonine hydrolyase) which catalyzes the committed step in branched chain amino acid biosynthesis in plants and microorganisms, the pyridoxal 5'-phosphate (PLP)-dependent dehydration/deamination of L-threonine (or L-serine) to 2-ketobutyrate (or pyruvate). ThrD-I is a cooperative, feedback-regulated (isoleucine and valine) allosteric enzyme that forms a tetramer and contains four pyridoxal phosphate moieties. Members of this CD belong to the superfamily of ACT regulatory domains.

>cd04929 ACT_TPH ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, tryptophan hydroxylases (TPH), both peripheral (TPH1) and neuronal (TPH2) enzymes

Probab=91.55  E-value=1.9  Score=33.34  Aligned_cols=60  Identities=18%  Similarity=0.158  Sum_probs=39.9

Q ss_pred             EcCCccchHHHHHHHHHhcCCeEeEeeeeccCCC-CeEEEEEEEEeCCCCCCHHHHHHHHHHHHhh
Q 021895           48 HCPDEVGIVAKLSECIASRGGNILAADVFVPEKK-NVFYSRSEFIFDPIKWPREQMDEDFFKLSKM  112 (306)
Q Consensus        48 iGpDRpGIVAaVS~~LAe~G~NIlD~sQ~id~l~-G~FfMrmeVdv~~~~~~~eeLreaL~~la~e  112 (306)
                      .-+|++|-.+.+=+.++++|+|+..+...-.... +.|..-++++  .   ..+.+++.++++.+.
T Consensus         6 ~l~~~~g~L~~iL~~f~~~~inl~~IeSRP~~~~~~~y~F~id~e--~---~~~~i~~~l~~l~~~   66 (74)
T cd04929           6 SLKNEVGGLAKALKLFQELGINVVHIESRKSKRRSSEFEIFVDCE--C---DQRRLDELVQLLKRE   66 (74)
T ss_pred             EcCCCCcHHHHHHHHHHHCCCCEEEEEeccCCCCCceEEEEEEEE--c---CHHHHHHHHHHHHHh
Confidence            3389999999999999999999999988643222 2232223333  2   234677777766543

ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, tryptophan hydroxylases (TPH), both peripheral (TPH1) and neuronal (TPH2) enzymes. TPH catalyses the hydroxylation of L-Trp to 5-hydroxytryptophan, the rate limiting step in the biosynthesis of 5-hydroxytryptamine (serotonin) and the first reaction in the synthesis of melatonin. Very little is known about the role of the ACT domain in TPH, which appears to be regulated by phosphorylation but not by its substrate or cofactor. Members of this CD belong to the superfamily of ACT regulatory domains.

>cd04919 ACT_AK-Hom3_2 ACT domains located C-terminal to the catalytic domain of the aspartokinase (AK) HOM3

Probab=91.41  E-value=1.8  Score=30.99  Aligned_cols=35  Identities=17%  Similarity=0.134  Sum_probs=30.4

Q ss_pred             EEEEEEcC---CccchHHHHHHHHHhcCCeEeEeeeec
Q 021895           43 GIHVFHCP---DEVGIVAKLSECIASRGGNILAADVFV   77 (306)
Q Consensus        43 ~ILTViGp---DRpGIVAaVS~~LAe~G~NIlD~sQ~i   77 (306)
                      .+|+++|.   +++|+.+++-+.|+++|+|+.-+.|..
T Consensus         2 ~~isvvg~~~~~~~~~~~~if~~L~~~~I~v~~i~q~~   39 (66)
T cd04919           2 AILSLVGKHMKNMIGIAGRMFTTLADHRINIEMISQGA   39 (66)
T ss_pred             eEEEEECCCCCCCcCHHHHHHHHHHHCCCCEEEEEecC
Confidence            46788886   789999999999999999999998843

This CD includes the second of two ACT domains located C-terminal to the catalytic domain of the aspartokinase (AK) HOM3, a monofunctional class enzyme found in Saccharomyces cerevisiae, and other related ACT domains. AK is the first enzyme in the aspartate metabolic pathway, catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP, and in fungi, is responsible for the production of threonine, isoleucine and methionine. S. cerevisiae has a single AK, which is regulated by feedback, allosteric inhibition by L-threonine. Recent studies shown that the allosteric transition triggered by binding of threonine to AK involves a large change in the conformation of the native hexameric enzyme that is converted to an inactive one of different shape and substantially smaller hydrodynamic size. Members of this CD belong to the superfamily of ACT regulatory domains.

>PRK06349 homoserine dehydrogenase; Provisional

Probab=91.23  E-value=1  Score=45.05  Aligned_cols=68  Identities=10%  Similarity=-0.060  Sum_probs=47.4

Q ss_pred             CCcccEEEEEEcCCccchHHHHHHHHHhcCCeEeEeeeeccCCCCeEEEEEEEEeCCCCCCHHHHHHHHHHHH
Q 021895           38 PTLTHGIHVFHCPDEVGIVAKLSECIASRGGNILAADVFVPEKKNVFYSRSEFIFDPIKWPREQMDEDFFKLS  110 (306)
Q Consensus        38 p~~~k~ILTViGpDRpGIVAaVS~~LAe~G~NIlD~sQ~id~l~G~FfMrmeVdv~~~~~~~eeLreaL~~la  110 (306)
                      ....+|.|.+.-.|++|+.++|++.++++|+||..+.|.... .+.--+.+..+.    .+..++++.++++.
T Consensus       344 ~~~~~yylRl~v~d~pGvLa~I~~~f~~~~vsI~si~q~~~~-~~~~~ivivT~~----~~e~~l~~~i~~L~  411 (426)
T PRK06349        344 EIESKYYLRLLVADKPGVLAKIAAIFAENGISIESILQKGAG-GEGAEIVIVTHE----TSEAALRAALAAIE  411 (426)
T ss_pred             HhceeEEEEEEecCCcchHHHHHHHHhhcCccEEEEEeccCC-CCceeEEEEEEe----CCHHHHHHHHHHHh
Confidence            345679999999999999999999999999999999886321 122222233331    23466666666544

>PRK09436 thrA bifunctional aspartokinase I/homoserine dehydrogenase I; Provisional

Probab=91.22  E-value=3.1  Score=45.32  Aligned_cols=104  Identities=13%  Similarity=0.088  Sum_probs=72.9

Q ss_pred             CcccEEEEEEcC---CccchHHHHHHHHHhcCCeEeEeeeeccCCCCeEEEEEEEEeCCCCCCHHHHHHHHHHHHhhhhc
Q 021895           39 TLTHGIHVFHCP---DEVGIVAKLSECIASRGGNILAADVFVPEKKNVFYSRSEFIFDPIKWPREQMDEDFFKLSKMFNA  115 (306)
Q Consensus        39 ~~~k~ILTViGp---DRpGIVAaVS~~LAe~G~NIlD~sQ~id~l~G~FfMrmeVdv~~~~~~~eeLreaL~~la~elgl  115 (306)
                      ..+-.+|+++|.   +++|+.+++-+.|++.|+||.-++|...  +-..  -+.++       .++..++++.+-++|-.
T Consensus       393 ~~~valIsvvG~gm~~~~gv~arif~aL~~~~InI~~IsqgsS--e~~I--s~vV~-------~~d~~~al~~LH~~f~~  461 (819)
T PRK09436        393 EENLAIISVVGDGMRTHPGIAAKFFSALGRANINIVAIAQGSS--ERSI--SVVID-------NDDATKALRACHQSFFL  461 (819)
T ss_pred             eCCEEEEEEEccCcccCcCHHHHHHHHHHHCCCCEEEEEeccc--cceE--EEEEc-------HHHHHHHHHHHHHHHhc
Confidence            345689999997   7899999999999999999999998533  1112  22232       34566777777677742


Q ss_pred             ccceeeecCCCCCceEEEEEeCC-cchHHHHHHhhh----cCCCCeEEEEEe
Q 021895          116 MRSVVRVPDIDPKYKVAVLASKQ-EHCLVDFLYGWQ----EGKLPVEITCVI  162 (306)
Q Consensus       116 ~~~~~rl~~~~~~~riavl~S~~-g~~L~~ll~~~~----~g~l~~~I~~Vi  162 (306)
                               ..++.+|++++-|. |..+..+|...+    .-.+..+|++|.
T Consensus       462 ---------~~~~~~i~l~G~G~VG~~~~~~l~~~~~~l~~~~~~l~v~~i~  504 (819)
T PRK09436        462 ---------SDQVLDVFVIGVGGVGGALLEQIKRQQPWLKKKNIDLRVCGIA  504 (819)
T ss_pred             ---------ccccccEEEEecCHHHHHHHHHHHHHHHHHHhcCCcEEEEEEE
Confidence                     23688999999987 677777775432    113567777764

>cd04924 ACT_AK-Arch_2 ACT domains of a monofunctional aspartokinase found mostly in Archaea species (ACT_AK-Arch_2)

Probab=91.22  E-value=2  Score=30.47  Aligned_cols=35  Identities=9%  Similarity=0.135  Sum_probs=30.6

Q ss_pred             EEEEEEcC---CccchHHHHHHHHHhcCCeEeEeeeec
Q 021895           43 GIHVFHCP---DEVGIVAKLSECIASRGGNILAADVFV   77 (306)
Q Consensus        43 ~ILTViGp---DRpGIVAaVS~~LAe~G~NIlD~sQ~i   77 (306)
                      .+++++|.   +++|+.+++-+.|+++|+|+.-+.|..
T Consensus         2 ~~isivg~~~~~~~~~~~~i~~~L~~~~I~v~~i~q~~   39 (66)
T cd04924           2 AVVAVVGSGMRGTPGVAGRVFGALGKAGINVIMISQGS   39 (66)
T ss_pred             eEEEEECCCCCCCccHHHHHHHHHHHCCCCEEEEEecC
Confidence            46788885   789999999999999999999998853

Included in this CD is the second of two ACT domains of a monofunctional aspartokinase found mostly in Archaea species (ACT_AK-Arch_2). The first or N-terminal ACT domain of these proteins cluster with the ThrA-like ACT 1 domains (ACT_AKi-HSDH-ThrA-like_1) which includes the threonine-sensitive archaeal Methanococcus jannaschii aspartokinase ACT 1 domain. Members of this CD belong to the superfamily of ACT regulatory domains.

>PRK08300 acetaldehyde dehydrogenase; Validated

Probab=91.14  E-value=0.58  Score=45.53  Aligned_cols=72  Identities=21%  Similarity=0.272  Sum_probs=46.1

Q ss_pred             CCceEEEEEeCC-cch-HHHHHHhhhcCCCCeEEEEEeeCCCCCCChhHHHHHHhCCCCEEEeCCCCCChHHHHHHH--h
Q 021895          127 PKYKVAVLASKQ-EHC-LVDFLYGWQEGKLPVEITCVISNHDRGPNSHVIRFLERHGIPYHYLCAKENEREEELLEL--V  202 (306)
Q Consensus       127 ~~~riavl~S~~-g~~-L~~ll~~~~~g~l~~~I~~Visn~~~~~~~~~~~~A~~~gIp~~~~~~k~~~~e~e~~~~--v  202 (306)
                      ++.||+|+++|. |+. +..++.   .+  ..++++|+...   +++..+++|+++|+|+.+-      .-+++++.  .
T Consensus         3 ~klrVAIIGtG~IGt~hm~~l~~---~~--~velvAVvdid---~es~gla~A~~~Gi~~~~~------~ie~LL~~~~~   68 (302)
T PRK08300          3 SKLKVAIIGSGNIGTDLMIKILR---SE--HLEPGAMVGID---PESDGLARARRLGVATSAE------GIDGLLAMPEF   68 (302)
T ss_pred             CCCeEEEEcCcHHHHHHHHHHhc---CC--CcEEEEEEeCC---hhhHHHHHHHHcCCCcccC------CHHHHHhCcCC
Confidence            468999999998 444 333322   22  37999988764   4556778899999998651      12344442  1


Q ss_pred             cCCcEEEEec
Q 021895          203 QNTDFLVLAR  212 (306)
Q Consensus       203 ~~~D~vVlA~  212 (306)
                      .+.|+++.+-
T Consensus        69 ~dIDiVf~AT   78 (302)
T PRK08300         69 DDIDIVFDAT   78 (302)
T ss_pred             CCCCEEEECC
Confidence            3577777754

>PRK10696 tRNA 2-thiocytidine biosynthesis protein TtcA; Provisional

Probab=90.65  E-value=2.3  Score=39.56  Aligned_cols=79  Identities=24%  Similarity=0.354  Sum_probs=51.3

Q ss_pred             HHHHHHHHHHhhhhcccceeeecCCCCCceEEEEEeCCc--chHHHHHHhhhc-CCCCeEEEEEeeCCCCC--CChhHHH
Q 021895          101 QMDEDFFKLSKMFNAMRSVVRVPDIDPKYKVAVLASKQE--HCLVDFLYGWQE-GKLPVEITCVISNHDRG--PNSHVIR  175 (306)
Q Consensus       101 eLreaL~~la~elgl~~~~~rl~~~~~~~riavl~S~~g--~~L~~ll~~~~~-g~l~~~I~~Visn~~~~--~~~~~~~  175 (306)
                      .+.+.+.+..++++|         ..+..||+|.+||..  .+|-.++..++. ...+.++.+|-.|+.-.  ....+.+
T Consensus        11 ~~~~~v~~~i~~~~l---------i~~~~kilVa~SGG~DS~~LL~ll~~l~~~~~~~~~l~av~vd~g~~~~~~~~~~~   81 (258)
T PRK10696         11 RLRRQVGQAIADFNM---------IEEGDRVMVCLSGGKDSYTLLDILLNLQKRAPINFELVAVNLDQKQPGFPEHVLPE   81 (258)
T ss_pred             HHHHHHHHHHHHcCC---------CCCCCEEEEEecCCHHHHHHHHHHHHHHHhCCCCeEEEEEEecCCCCCCCHHHHHH
Confidence            455555555566663         123458999999974  566666655442 33446888888776321  1235688


Q ss_pred             HHHhCCCCEEEeC
Q 021895          176 FLERHGIPYHYLC  188 (306)
Q Consensus       176 ~A~~~gIp~~~~~  188 (306)
                      +|+++|||++++.
T Consensus        82 ~~~~lgI~~~v~~   94 (258)
T PRK10696         82 YLESLGVPYHIEE   94 (258)
T ss_pred             HHHHhCCCEEEEE
Confidence            9999999998764

>cd04932 ACT_AKiii-LysC-EC_1 ACT domains located C-terminal to the catalytic domain of the lysine-sensitive aspartokinase isoenzyme AKIII

Probab=90.22  E-value=1.7  Score=33.57  Aligned_cols=32  Identities=13%  Similarity=0.099  Sum_probs=28.0

Q ss_pred             EEEE--E-cCCccchHHHHHHHHHhcCCeEeEeee
Q 021895           44 IHVF--H-CPDEVGIVAKLSECIASRGGNILAADV   75 (306)
Q Consensus        44 ILTV--i-GpDRpGIVAaVS~~LAe~G~NIlD~sQ   75 (306)
                      .||+  . .++++|..++|-+.|+++|+||.-+.|
T Consensus         3 ~ItI~~~~~~~~~g~~~~IF~~La~~~I~VDmI~~   37 (75)
T cd04932           3 LVTLKSPNMLHAQGFLAKVFGILAKHNISVDLITT   37 (75)
T ss_pred             EEEEecCCCCCCcCHHHHHHHHHHHcCCcEEEEee
Confidence            4566  3 478899999999999999999999987

This CD includes the first of two ACT domains located C-terminal to the catalytic domain of the lysine-sensitive aspartokinase isoenzyme AKIII, a monofunctional class enzyme found in bacteria (Escherichia coli (EC) LysC). Aspartokinase is the first enzyme in the aspartate metabolic pathway and catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. The E. coli AKIII (LysC) binds two feedback allosteric inhibitor lysine molecules at the dimer interface located between the ACT1 domain of two subunits. Members of this CD belong to the superfamily of ACT regulatory domains.

>cd04937 ACT_AKi-DapG-BS_2 ACT domains of the diaminopimelate-sensitive aspartokinase (AK) isoenzyme AKI

Probab=89.93  E-value=2.8  Score=30.62  Aligned_cols=33  Identities=18%  Similarity=0.214  Sum_probs=28.6

Q ss_pred             EEEEEEcC---CccchHHHHHHHHHhcCCeEeEeee
Q 021895           43 GIHVFHCP---DEVGIVAKLSECIASRGGNILAADV   75 (306)
Q Consensus        43 ~ILTViGp---DRpGIVAaVS~~LAe~G~NIlD~sQ   75 (306)
                      .+|+++|.   +++|+.+++-+.|+++|+|+....+
T Consensus         2 ~~isvvG~~~~~~~gi~~~if~aL~~~~I~v~~~~~   37 (64)
T cd04937           2 AKVTIIGSRIRGVPGVMAKIVGALSKEGIEILQTAD   37 (64)
T ss_pred             eEEEEECCCccCCcCHHHHHHHHHHHCCCCEEEEEc
Confidence            46889996   8899999999999999999975554

This CD includes the C-terminal of the two ACT domains of the diaminopimelate-sensitive aspartokinase (AK) isoenzyme AKI, a monofunctional class enzyme found in Bacilli (Bacillus subtilis (BS) strain 168), Clostridia, and Actinobacteria bacterial species. In B. subtilis, the regulation of the diaminopimelate-lysine biosynthetic pathway involves dual control by diaminopimelate and lysine, effected through separate diaminopimelate- and lysine-sensitive AK isoenzymes. AKI activity is invariant during the exponential and stationary phases of growth and is not altered by addition of amino acids to the growth medium. The role of this isoenzyme is most likely to provide a constant level of aspartyl-beta-phosphate for the biosynthesis of diaminopimelate for peptidoglycan synthesis and dipicolinate during sporulation. The BS AKI is tetrameric consisting of two alpha and two beta subunits; th

>PRK11899 prephenate dehydratase; Provisional

Probab=89.61  E-value=3.2  Score=39.82  Aligned_cols=68  Identities=10%  Similarity=-0.000  Sum_probs=44.9

Q ss_pred             cEEEEEEcCCccchHHHHHHHHHhcCCeEeEeeeeccC-CCCeEEEEEEEEeCCCCCCHHHHHHHHHHHHhh
Q 021895           42 HGIHVFHCPDEVGIVAKLSECIASRGGNILAADVFVPE-KKNVFYSRSEFIFDPIKWPREQMDEDFFKLSKM  112 (306)
Q Consensus        42 k~ILTViGpDRpGIVAaVS~~LAe~G~NIlD~sQ~id~-l~G~FfMrmeVdv~~~~~~~eeLreaL~~la~e  112 (306)
                      +.-+.+.-+|+||..+.|=+.++.+|+|++.+..--.. ..+.|...++++-   ..+-+.++++|+++.+.
T Consensus       194 ktsl~~~~~~~pGaL~~vL~~Fa~~gINLtkIeSRP~~~~~~~Y~F~id~eg---~~~d~~v~~aL~~l~~~  262 (279)
T PRK11899        194 VTTFVFRVRNIPAALYKALGGFATNGVNMTKLESYMVGGSFTATQFYADIEG---HPEDRNVALALEELRFF  262 (279)
T ss_pred             eEEEEEEeCCCCChHHHHHHHHHHcCCCeeeEEeeecCCCCceEEEEEEEEC---CCCCHHHHHHHHHHHHh
Confidence            43333334899999999999999999999998875322 1233433444443   22346778888877543

>PRK08526 threonine dehydratase; Provisional

Probab=89.42  E-value=1.3  Score=44.25  Aligned_cols=43  Identities=14%  Similarity=0.128  Sum_probs=36.8

Q ss_pred             CCCCCCcccEEEEEEcCCccchHHHHHHHHHhcCCeEeEeeee
Q 021895           34 SSVSPTLTHGIHVFHCPDEVGIVAKLSECIASRGGNILAADVF   76 (306)
Q Consensus        34 ~~~~p~~~k~ILTViGpDRpGIVAaVS~~LAe~G~NIlD~sQ~   76 (306)
                      -.+..+...+.+.+.=|||||-.+.+++.+++.|.||+++++.
T Consensus       318 ~~l~~~~r~~~~~~~~~d~pg~l~~~~~~~~~~~~~i~~~~~~  360 (403)
T PRK08526        318 KGLIKSYRKMKLHVTLVDKPGALMGLTDILKEANANIVKIDYD  360 (403)
T ss_pred             HHHHhcCCEEEEEEEcCCCCCHHHHHHHHHccCCCcEEEEEEE
Confidence            3444566677888888999999999999999999999999884

>TIGR01761 thiaz-red thiazolinyl imide reductase

Probab=89.29  E-value=0.68  Score=45.56  Aligned_cols=51  Identities=14%  Similarity=0.233  Sum_probs=33.9

Q ss_pred             CCceEEEEEeCCcchHHHHHHhhhcCCCCeEEEEEeeCCCCCCChhHHHHHHhCCCCE
Q 021895          127 PKYKVAVLASKQEHCLVDFLYGWQEGKLPVEITCVISNHDRGPNSHVIRFLERHGIPY  184 (306)
Q Consensus       127 ~~~riavl~S~~g~~L~~ll~~~~~g~l~~~I~~Visn~~~~~~~~~~~~A~~~gIp~  184 (306)
                      ++.||+|++++-|...   +.++++-.-.+++++|++..    ...+.++|+++|||+
T Consensus         2 ~~~rVgViG~~~G~~h---~~al~~~~~~~eLvaV~d~~----~erA~~~A~~~gi~~   52 (343)
T TIGR01761         2 DVQSVVVCGTRFGQFY---LAAFAAAPERFELAGILAQG----SERSRALAHRLGVPL   52 (343)
T ss_pred             CCcEEEEEeHHHHHHH---HHHHHhCCCCcEEEEEEcCC----HHHHHHHHHHhCCCc
Confidence            4689999999655322   23332211137999998864    235788999999983

This reductase is found associated with gene clusters for the biosynthesis of various non-ribosomal peptide derived natural products in which cysteine is cyclized to a thiazoline ring containing an imide double bond. Examples include yersiniabactin (irp3/YbtU) and pyochelin (PchG).

>cd04912 ACT_AKiii-LysC-EC-like_1 ACT domains located C-terminal to the catalytic domain of the lysine-sensitive aspartokinase isoenzyme AKIII

Probab=89.21  E-value=2.1  Score=32.38  Aligned_cols=33  Identities=18%  Similarity=0.168  Sum_probs=28.0

Q ss_pred             EEEEEEc---CCccchHHHHHHHHHhcCCeEeEeee
Q 021895           43 GIHVFHC---PDEVGIVAKLSECIASRGGNILAADV   75 (306)
Q Consensus        43 ~ILTViG---pDRpGIVAaVS~~LAe~G~NIlD~sQ   75 (306)
                      ..+++.|   ++.+|++++|-+.|+++|+|+.-+.+
T Consensus         2 ~~Vsi~g~~l~~~~g~~~~if~~L~~~~I~v~~i~~   37 (75)
T cd04912           2 TLLNIKSNRMLGAHGFLAKVFEIFAKHGLSVDLIST   37 (75)
T ss_pred             EEEEEEcCCCCCCccHHHHHHHHHHHcCCeEEEEEc
Confidence            3567754   67899999999999999999988865

This CD includes the first of two ACT domains located C-terminal to the catalytic domain of the lysine-sensitive aspartokinase isoenzyme AKIII, a monofunctional class enzyme found in bacteria (Escherichia coli (EC) LysC) and plants, (Zea mays Ask1, Ask2, and Arabidopsis thaliana AK1). Aspartokinase is the first enzyme in the aspartate metabolic pathway and catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. Like the A. thaliana AK1 (AK1-AT), the E. coli AKIII (LysC) has two bound feedback allosteric inhibitor lysine molecules at the dimer interface located between the ACT1 domain of two subunits. The lysine-sensitive plant isoenzyme is synergistically inhibited by S-adenosylmethionine. A homolog of this group appears to be the Saccharomyces cerevisiae AK (Hom3) which clusters with this group as well. Members of this CD

>cd04918 ACT_AK1-AT_2 ACT domains located C-terminal to the catalytic domain of a monofunctional, lysine-sensitive, plant aspartate kinase 1 (AK1)

Probab=88.99  E-value=4.1  Score=29.94  Aligned_cols=36  Identities=11%  Similarity=0.039  Sum_probs=30.7

Q ss_pred             cEEEEEEcC--CccchHHHHHHHHHhcCCeEeEeeeec
Q 021895           42 HGIHVFHCP--DEVGIVAKLSECIASRGGNILAADVFV   77 (306)
Q Consensus        42 k~ILTViGp--DRpGIVAaVS~~LAe~G~NIlD~sQ~i   77 (306)
                      +.+++++|.  ..+|+.+++-+.|+++|+||.-++|-.
T Consensus         1 ~a~VsvVG~~~~~~~~~~~i~~aL~~~~I~v~~i~~g~   38 (65)
T cd04918           1 RSIISLIGNVQRSSLILERAFHVLYTKGVNVQMISQGA   38 (65)
T ss_pred             CcEEEEECCCCCCccHHHHHHHHHHHCCCCEEEEEecC
Confidence            357889987  468999999999999999999998843

This CD includes the second of two ACT domains located C-terminal to the catalytic domain of a monofunctional, lysine-sensitive, plant aspartate kinase 1 (AK1), which can be synergistically inhibited by S-adenosylmethionine (SAM). This isoenzyme is found in higher plants, Arabidopsis thaliana (AT) and Zea mays, and also in Chlorophyta. In its inactive state, Arabidopsis AK1 binds the effectors lysine and SAM (two molecules each) at the interface of two ACT1 domain subunits. The second ACT domain (ACT2), this CD, does not interact with an effector. Members of this CD belong to the superfamily of ACT regulatory domains.

>COG2844 GlnD UTP:GlnB (protein PII) uridylyltransferase [Posttranslational modification, protein turnover, chaperones]

Probab=88.73  E-value=2.3  Score=46.71  Aligned_cols=54  Identities=24%  Similarity=0.381  Sum_probs=42.2

Q ss_pred             CCcccC-CCCCCcccEEEEEEcCCccchHHHHHHHHHhcCCeEeEeeeeccCCCCe
Q 021895           29 GEPIES-SVSPTLTHGIHVFHCPDEVGIVAKLSECIASRGGNILAADVFVPEKKNV   83 (306)
Q Consensus        29 ~~~~~~-~~~p~~~k~ILTViGpDRpGIVAaVS~~LAe~G~NIlD~sQ~id~l~G~   83 (306)
                      |.|+-- |+.+...-.=|+|.+||+|.+-+.|+..+..+|.||.|.+-++.. +|+
T Consensus       670 ~~~Lv~~~~r~~~~~teV~V~a~d~p~Lfa~v~~~~~~~g~~i~dAqi~tt~-dG~  724 (867)
T COG2844         670 GKPLVLISVRPHSGGTEVFVYAPDRPRLFAVVCAALSRRGLSIVDAQIFTTR-DGY  724 (867)
T ss_pred             cCcceeeeecccCCceEEEEEcCCCccHHHHHHHHHccCCCceeeeEEEEcc-CCc
Confidence            344433 444444556789999999999999999999999999999888754 453

>cd01994 Alpha_ANH_like_IV This is a subfamily of Adenine nucleotide alpha hydrolases superfamily

Probab=88.62  E-value=3.3  Score=37.36  Aligned_cols=57  Identities=19%  Similarity=0.195  Sum_probs=37.4

Q ss_pred             eEEEEEeCCcchHHHHHHhhhcCCCCeEEEEEeeCCCCCC---------ChhHHHHHHhCCCCEEEeCC
Q 021895          130 KVAVLASKQEHCLVDFLYGWQEGKLPVEITCVISNHDRGP---------NSHVIRFLERHGIPYHYLCA  189 (306)
Q Consensus       130 riavl~S~~g~~L~~ll~~~~~g~l~~~I~~Visn~~~~~---------~~~~~~~A~~~gIp~~~~~~  189 (306)
                      |++++.||.--...++..+.+.|   .+|.++++..+..+         -..+...|+..|||...+..
T Consensus         1 kv~v~~SGGkDS~~al~~a~~~G---~~v~~l~~~~~~~~~~~~~h~~~~e~~~~~A~~lgipl~~i~~   66 (194)
T cd01994           1 KVVALISGGKDSCYALYRALEEG---HEVVALLNLTPEEGSSMMYHTVNHELLELQAEAMGIPLIRIEI   66 (194)
T ss_pred             CEEEEecCCHHHHHHHHHHHHcC---CEEEEEEEEecCCCCcccccccCHHHHHHHHHHcCCcEEEEeC
Confidence            68899998754444555555555   57777776532211         12567789999999988863

Adeninosine nucleotide alpha hydrolases superfamily includes N type ATP PPases and ATP sulphurylases. It forms a apha/beta/apha fold which binds to Adenosine group. This subfamily of proteins is predicted to bind ATP. This domainhas a strongly conserved motif SGGKD at the N terminus.

>cd04916 ACT_AKiii-YclM-BS_2 ACT domains located C-terminal to the catalytic domain of the lysine plus threonine-sensitive aspartokinase isoenzyme AKIII

Probab=88.58  E-value=4.5  Score=28.66  Aligned_cols=35  Identities=20%  Similarity=0.228  Sum_probs=30.2

Q ss_pred             EEEEEEcC---CccchHHHHHHHHHhcCCeEeEeeeec
Q 021895           43 GIHVFHCP---DEVGIVAKLSECIASRGGNILAADVFV   77 (306)
Q Consensus        43 ~ILTViGp---DRpGIVAaVS~~LAe~G~NIlD~sQ~i   77 (306)
                      .+++++|.   +++|+.+++-+.|++.|+|+.-++|..
T Consensus         2 ~lisivg~~~~~~~~~~~~i~~~L~~~~i~v~~i~~~~   39 (66)
T cd04916           2 ALIMVVGEGMKNTVGVSARATAALAKAGINIRMINQGS   39 (66)
T ss_pred             eEEEEEcCCCCCCccHHHHHHHHHHHCCCCEEEEEecC
Confidence            36788885   789999999999999999999998843

This CD includes the second of two ACT domains located C-terminal to the catalytic domain of the lysine plus threonine-sensitive aspartokinase isoenzyme AKIII, a monofunctional class enzyme found in Bacilli (Bacillus subtilis (BS) YclM) and Clostridia species. Aspartokinase is the first enzyme in the aspartate metabolic pathway and catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. B. subtilis YclM is reported to be a single polypeptide of 50 kD. AKIII from B. subtilis strain 168 is induced by lysine and repressed by threonine and it is synergistically inhibited by lysine and threonine. Members of this CD belong to the superfamily of ACT regulatory domains.

>PRK10820 DNA-binding transcriptional regulator TyrR; Provisional

Probab=88.00  E-value=1.3  Score=45.47  Aligned_cols=90  Identities=14%  Similarity=0.226  Sum_probs=57.3

Q ss_pred             EEEEEcCCccchHHHHHHHHHhcCCeEeEeeeeccCCCCeEEEEEEEEeCCCCCCHHHHHHHHHHHHhhhhcccceeeec
Q 021895           44 IHVFHCPDEVGIVAKLSECIASRGGNILAADVFVPEKKNVFYSRSEFIFDPIKWPREQMDEDFFKLSKMFNAMRSVVRVP  123 (306)
Q Consensus        44 ILTViGpDRpGIVAaVS~~LAe~G~NIlD~sQ~id~l~G~FfMrmeVdv~~~~~~~eeLreaL~~la~elgl~~~~~rl~  123 (306)
                      -|-|+|.||.||+..|...|+.+++|+..+..  +. .|.    +.+..++  .+.+.+..-++++..          ++
T Consensus         2 rl~~~~~dr~g~~~~~l~~~~~~~~~~~~~e~--~~-~~~----~~~~~~~--~~~~~~~~~~~~~~~----------~~   62 (520)
T PRK10820          2 RLEVFCEDRLGLTRELLDLLVLRSIDLRGIEI--DP-IGR----IYLNFAE--LEFESFSSLMAEIRR----------IA   62 (520)
T ss_pred             eEEEEeeccccHHHHHHHHHHhcCCCccEEEE--cC-CCe----EEEeCCC--cChhhHHHHHHHHhc----------CC
Confidence            36789999999999999999999999999887  32 243    4444443  345555444443321          12


Q ss_pred             CCCCCceEEEEEeCCc-chHHHHHHhhhcC
Q 021895          124 DIDPKYKVAVLASKQE-HCLVDFLYGWQEG  152 (306)
Q Consensus       124 ~~~~~~riavl~S~~g-~~L~~ll~~~~~g  152 (306)
                      ....-+.|.++-+-+. .-|+++|+...+|
T Consensus        63 gv~~~~~~~~~~~e~e~~~L~aIL~sm~eG   92 (520)
T PRK10820         63 GVTDVRTVPFMPSEREHRALSALLEALPEP   92 (520)
T ss_pred             CccchhhhccChHHHHHHHHHHHHHhCCCc
Confidence            2222334566655444 4577888877666

>COG3978 Acetolactate synthase (isozyme II), small (regulatory) subunit [Function unknown]

Probab=87.65  E-value=3.9  Score=33.27  Aligned_cols=68  Identities=9%  Similarity=-0.023  Sum_probs=58.3

Q ss_pred             cccEEEEEEcCCccchHHHHHHHHHhcCCeEeEeeeeccCCCCeEEEEEEEEeCCCCCCHHHHHHHHHHHH
Q 021895           40 LTHGIHVFHCPDEVGIVAKLSECIASRGGNILAADVFVPEKKNVFYSRSEFIFDPIKWPREQMDEDFFKLS  110 (306)
Q Consensus        40 ~~k~ILTViGpDRpGIVAaVS~~LAe~G~NIlD~sQ~id~l~G~FfMrmeVdv~~~~~~~eeLreaL~~la  110 (306)
                      +|.|-+++...++||.+..|=+.....|..+..++++...++|.-..-+.|+.+   -+.+-|...|+++-
T Consensus         1 m~qyqldl~ar~~pe~leRVLrvtrhRGF~vcamnmt~~~da~~~nie~tV~s~---R~~~lL~~QLeKl~   68 (86)
T COG3978           1 MMQYQLDLSARFNPETLERVLRVTRHRGFRVCAMNMTAAVDAGNANIELTVDSD---RSVDLLTSQLEKLY   68 (86)
T ss_pred             CceEEEeeeccCChHHHHHHHHHhhhcCeEEEEeecccccccccceEEEEEcCC---CChHHHHHHHHHHc
Confidence            578999999999999999999999999999999999876668888877777744   46889999888763

>cd04930 ACT_TH ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, tyrosine hydroxylases (TH)

Probab=87.58  E-value=2.9  Score=35.09  Aligned_cols=63  Identities=8%  Similarity=0.042  Sum_probs=40.2

Q ss_pred             EEEEEcCCccchHHHHHHHHHhcCCeEeEeeeeccCC-CCeEEEEEEEEeCCCCCCHHHHHHHHHHHHh
Q 021895           44 IHVFHCPDEVGIVAKLSECIASRGGNILAADVFVPEK-KNVFYSRSEFIFDPIKWPREQMDEDFFKLSK  111 (306)
Q Consensus        44 ILTViGpDRpGIVAaVS~~LAe~G~NIlD~sQ~id~l-~G~FfMrmeVdv~~~~~~~eeLreaL~~la~  111 (306)
                      -+.+.-+|+||-.+.|=+.++++|+|+..+...-... .+.|..-++++..     .++++..++.+.+
T Consensus        43 Slifsl~~~pGsL~~iL~~Fa~~gINLt~IESRP~~~~~~eY~FfIdieg~-----~~~~~~aL~~L~~  106 (115)
T cd04930          43 TLLFSLKEGFSSLSRILKVFETFEAKIHHLESRPSRKEGGDLEVLVRCEVH-----RSDLLQLISSLRQ  106 (115)
T ss_pred             EEEEEeCCCCcHHHHHHHHHHHCCCCEEEEECCcCCCCCceEEEEEEEEeC-----HHHHHHHHHHHHH
Confidence            3344449999999999999999999999998853222 2223323444322     2346666665543

ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, tyrosine hydroxylases (TH). TH catalyses the hydroxylation of L-Tyr to 3,4-dihydroxyphenylalanine, the rate limiting step in the biosynthesis of catecholamines (dopamine, noradrenaline and adrenaline), functioning as hormones and neurotransmitters. The enzyme is not regulated by its amino acid substrate, but instead by phosphorylation at several serine residues located N-terminal of the ACT domain, and by feedback inhibition by catecholamines at the active site. Members of this CD belong to the superfamily of ACT regulatory domains.

>cd04891 ACT_AK-LysC-DapG-like_1 ACT domains of the lysine-sensitive aspartokinase isoenzyme AKII and related proteins

Probab=87.24  E-value=2.3  Score=29.02  Aligned_cols=28  Identities=32%  Similarity=0.386  Sum_probs=25.6

Q ss_pred             CCccchHHHHHHHHHhcCCeEeEeeeec
Q 021895           50 PDEVGIVAKLSECIASRGGNILAADVFV   77 (306)
Q Consensus        50 pDRpGIVAaVS~~LAe~G~NIlD~sQ~i   77 (306)
                      +|.+|+.+++.+.|+++|+||.-+.|..
T Consensus         9 ~~~~~~~~~i~~~L~~~~i~i~~i~~~~   36 (61)
T cd04891           9 PDKPGVAAKIFSALAEAGINVDMIVQSV   36 (61)
T ss_pred             CCCCcHHHHHHHHHHHcCCcEEEEEEcC
Confidence            7789999999999999999999998854

This CD includes the N-terminal of the two ACT domains of the lysine-sensitive aspartokinase isoenzyme AKII of Bacillus subtilis (BS) strain 168, and the lysine plus threonine-sensitive aspartokinase of Corynebacterium glutamicum, as well as, the first and third, of four, ACT domains present in cyanobacteria AK. Also included are the N-terminal of the two ACT domains of the diaminopimelate-sensitive aspartokinase isoenzyme AKI found in Bacilli (Bacillus subtilis strain 168), Clostridia, and Actinobacteria bacterial species. Members of this CD belong to the superfamily of ACT regulatory domains.

>cd04868 ACT_AK-like ACT domains C-terminal to the catalytic domain of aspartokinase (AK; 4-L-aspartate-4-phosphotransferase)

Probab=86.98  E-value=2  Score=28.83  Aligned_cols=34  Identities=18%  Similarity=0.071  Sum_probs=30.2

Q ss_pred             EEEEEcCC---ccchHHHHHHHHHhcCCeEeEeeeec
Q 021895           44 IHVFHCPD---EVGIVAKLSECIASRGGNILAADVFV   77 (306)
Q Consensus        44 ILTViGpD---RpGIVAaVS~~LAe~G~NIlD~sQ~i   77 (306)
                      ++++.|.+   .+|..+++-+.|+++|+||.-+.|..
T Consensus         2 ~i~v~g~~~~~~~~~~~~i~~~l~~~~i~i~~i~~~~   38 (60)
T cd04868           2 KVSIVGVGMRGTPGVAAKIFSALAEAGINVDMISQSE   38 (60)
T ss_pred             EEEEECCCCCCCCCHHHHHHHHHHHCCCcEEEEEcCC
Confidence            57888887   89999999999999999999998853

This CD includes each of two ACT domains C-terminal to the catalytic domain of aspartokinase (AK; 4-L-aspartate-4-phosphotransferase). Typically, AK consists of two ACT domains in a tandem repeat, but the second ACT domain is inserted within the first, resulting in, what is normally the terminal beta strand of ACT2, formed from a region N-terminal of ACT1. AK catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. Aspartokinase is the first enzyme in the pathway of the biosynthesis of the aspartate family of amino acids (lysine, threonine, methionine, and isoleucine) and the bacterial cell wall component, meso-diaminopimelate. One mechanism for the regulation of this pathway is by the production of several isoenzymes of aspartokinase with different repressors and allosteric inhibitors. Pairs of ACT domains are proposed to specifically bind am

>TIGR00289 conserved hypothetical protein TIGR00289

Probab=86.85  E-value=4.7  Score=37.60  Aligned_cols=78  Identities=24%  Similarity=0.316  Sum_probs=48.4

Q ss_pred             ceEEEEEeCCcchHHHHHHhhhcCCCCeEEEEEeeCCCCCC--------C-hhHHHHHHhCCCCEEEeCCCC-CChH-HH
Q 021895          129 YKVAVLASKQEHCLVDFLYGWQEGKLPVEITCVISNHDRGP--------N-SHVIRFLERHGIPYHYLCAKE-NERE-EE  197 (306)
Q Consensus       129 ~riavl~S~~g~~L~~ll~~~~~g~l~~~I~~Visn~~~~~--------~-~~~~~~A~~~gIp~~~~~~k~-~~~e-~e  197 (306)
                      +|++++.||.--+..+++.+.+.    .+|+++++..+...        + .-+...|+..|||.+.+.... .+.| ++
T Consensus         1 Mkv~vl~SGGKDS~lAl~~~~~~----~~V~~L~~~~~~~~~s~~~h~~~~~~~~~qA~algiPl~~~~~~~~~e~~~~~   76 (222)
T TIGR00289         1 MKVAVLYSGGKDSILALYKALEE----HEVISLVGVFSENEESYMFHSPNLHLTDLVAEAVGIPLIKLYTSGEEEKEVED   76 (222)
T ss_pred             CeEEEEecCcHHHHHHHHHHHHc----CeeEEEEEEcCCCCCccccccCCHHHHHHHHHHcCCCeEEEEcCCchhHHHHH
Confidence            48999999976555566666554    37777776554321        1 245667899999987765332 1222 45


Q ss_pred             HHHHhc--CCcEEEE
Q 021895          198 LLELVQ--NTDFLVL  210 (306)
Q Consensus       198 ~~~~v~--~~D~vVl  210 (306)
                      +.+.++  .+|-||.
T Consensus        77 l~~~l~~~gv~~vv~   91 (222)
T TIGR00289        77 LAGQLGELDVEALCI   91 (222)
T ss_pred             HHHHHHHcCCCEEEE
Confidence            656555  6777665

Homologous proteins related to MJ0570 of Methanococcus jannaschii include both the apparent orthologs found by this model above the trusted cutoff, the much longer protein YLR143W from Saccharomyces cerevisiae, and second homologous proteins from Archaeoglobus fulgidus and Pyrococcus horikoshii that appear to represent a second orthologous group.

>PRK09466 metL bifunctional aspartate kinase II/homoserine dehydrogenase II; Provisional

Probab=86.54  E-value=11  Score=41.26  Aligned_cols=104  Identities=3%  Similarity=-0.052  Sum_probs=72.8

Q ss_pred             CCcccEEEEEEcC---CccchHHHHHHHHHhcCCeEeEeeeeccCCCCeEEEEEEEEeCCCCCCHHHHHHHHHHHHhhhh
Q 021895           38 PTLTHGIHVFHCP---DEVGIVAKLSECIASRGGNILAADVFVPEKKNVFYSRSEFIFDPIKWPREQMDEDFFKLSKMFN  114 (306)
Q Consensus        38 p~~~k~ILTViGp---DRpGIVAaVS~~LAe~G~NIlD~sQ~id~l~G~FfMrmeVdv~~~~~~~eeLreaL~~la~elg  114 (306)
                      -+..-.+|+++|.   .++|+.+++-+.|++.|+|++...+.      ...+.+.|+       .++..++++.+-++|-
T Consensus       387 v~~~~a~VsvVG~gm~~~~gv~~~~f~aL~~~~I~ii~~~~s------~~sis~vV~-------~~d~~~av~~LH~~f~  453 (810)
T PRK09466        387 LREGLALVALVGAGVTRNPLHCHRFYQQLKDQPVEFIWQSED------GLSLVAVLR-------QGPTESLIQGLHQSLF  453 (810)
T ss_pred             EeCCeEEEEEeCCCcccCccHHHHHHHHHHhCCCcEEEEeCC------CcEEEEEEe-------hHHHHHHHHHHHHHHh
Confidence            3456689999995   58999999999999999999777651      123334443       3566777777777773


Q ss_pred             cccceeeecCCCCCceEEEEEeCC-cchHHHHHHhhhc-----CCCCeEEEEEee
Q 021895          115 AMRSVVRVPDIDPKYKVAVLASKQ-EHCLVDFLYGWQE-----GKLPVEITCVIS  163 (306)
Q Consensus       115 l~~~~~rl~~~~~~~riavl~S~~-g~~L~~ll~~~~~-----g~l~~~I~~Vis  163 (306)
                               ...++.+|++++-|. |..+..+|...++     -.+..+|++|..
T Consensus       454 ---------~~~~~i~i~l~G~G~VG~~l~~~l~~~~~~l~~~~g~~~~v~~I~~  499 (810)
T PRK09466        454 ---------RAEKRIGLVLFGKGNIGSRWLELFAREQSTLSARTGFEFVLVGVVD  499 (810)
T ss_pred             ---------CcCceEEEEEEecCCChHHHHHHHHHHHHHHHHhcCCCEEEEEEEe
Confidence                     223578999999988 5778788765432     224577787753

>COG1570 XseA Exonuclease VII, large subunit [DNA replication, recombination, and repair]

Probab=85.59  E-value=4.6  Score=41.53  Aligned_cols=131  Identities=14%  Similarity=0.128  Sum_probs=72.2

Q ss_pred             CCeEEEEEEEEeCCCCCCHHHHHHHHHHHHhhhhcccc---eeeecCCCCCceEEEEEeCCcchHHHHHHhhhcCCCC-e
Q 021895           81 KNVFYSRSEFIFDPIKWPREQMDEDFFKLSKMFNAMRS---VVRVPDIDPKYKVAVLASKQEHCLVDFLYGWQEGKLP-V  156 (306)
Q Consensus        81 ~G~FfMrmeVdv~~~~~~~eeLreaL~~la~elgl~~~---~~rl~~~~~~~riavl~S~~g~~L~~ll~~~~~g~l~-~  156 (306)
                      .|.|..+++-- .  +.+...|...|+++-++|..+.-   ....+-..-+++|+|..|..|-.++|++.-++.- .| +
T Consensus        88 rG~YQi~~~~~-~--p~G~G~L~~~~E~lK~kL~aEGlFd~~~KkpLP~~p~~IGVITS~tgAairDIl~~~~rR-~P~~  163 (440)
T COG1570          88 RGDYQIVAESM-E--PAGLGALYLAFEQLKAKLAAEGLFDPERKKPLPFFPKKIGVITSPTGAALRDILHTLSRR-FPSV  163 (440)
T ss_pred             CCceEEEEecC-C--cCChhHHHHHHHHHHHHHHhCCCcChhhcCCCCCCCCeEEEEcCCchHHHHHHHHHHHhh-CCCC
Confidence            67777555432 2  23567777777777666653321   0111112235799999999999999999765433 34 4


Q ss_pred             EEEEE--eeCCCCCCC--hhHHHHHHhCC-CCEEEeCCCCCC-------hHHHHHHHhcCCcEEEEeccCC
Q 021895          157 EITCV--ISNHDRGPN--SHVIRFLERHG-IPYHYLCAKENE-------REEELLELVQNTDFLVLARYMQ  215 (306)
Q Consensus       157 ~I~~V--isn~~~~~~--~~~~~~A~~~g-Ip~~~~~~k~~~-------~e~e~~~~v~~~D~vVlA~ym~  215 (306)
                      +|...  ...-+..+.  ...++.|.+.+ +.+..+.+.+..       +||.+.+.+.+..+=|+.+-+|
T Consensus       164 ~viv~pt~VQG~~A~~eIv~aI~~an~~~~~DvlIVaRGGGSiEDLW~FNdE~vaRAi~~s~iPvISAVGH  234 (440)
T COG1570         164 EVIVYPTLVQGEGAAEEIVEAIERANQRGDVDVLIVARGGGSIEDLWAFNDEIVARAIAASRIPVISAVGH  234 (440)
T ss_pred             eEEEEeccccCCCcHHHHHHHHHHhhccCCCCEEEEecCcchHHHHhccChHHHHHHHHhCCCCeEeeccc
Confidence            44321  112211100  23455555555 666666654332       2456666666555556666666

>COG2844 GlnD UTP:GlnB (protein PII) uridylyltransferase [Posttranslational modification, protein turnover, chaperones]

Probab=85.52  E-value=3.9  Score=44.97  Aligned_cols=40  Identities=18%  Similarity=0.200  Sum_probs=35.5

Q ss_pred             CcccEEEEEEcCCccchHHHHHHHHHhcCCeEeEeeeecc
Q 021895           39 TLTHGIHVFHCPDEVGIVAKLSECIASRGGNILAADVFVP   78 (306)
Q Consensus        39 ~~~k~ILTViGpDRpGIVAaVS~~LAe~G~NIlD~sQ~id   78 (306)
                      ..+.+++.|.|.||||+.|+|++.++++|.+|....-++-
T Consensus       788 ~~~~t~lEv~alDRpGLLa~v~~v~~dl~l~i~~AkItT~  827 (867)
T COG2844         788 SNDKTVLEVRALDRPGLLAALAGVFADLGLSLHSAKITTF  827 (867)
T ss_pred             CCCceEEEEEeCCcccHHHHHHHHHHhcccceeeeeeccc
Confidence            3467999999999999999999999999999999776643

>TIGR02079 THD1 threonine dehydratase

Probab=85.37  E-value=2  Score=42.88  Aligned_cols=45  Identities=11%  Similarity=0.088  Sum_probs=37.4

Q ss_pred             ccCCCCCCcccEEEEEEcCCccchHHHHHHHHHhcCCeEeEeeee
Q 021895           32 IESSVSPTLTHGIHVFHCPDEVGIVAKLSECIASRGGNILAADVF   76 (306)
Q Consensus        32 ~~~~~~p~~~k~ILTViGpDRpGIVAaVS~~LAe~G~NIlD~sQ~   76 (306)
                      ++..+..+...+.+.|.=|||||-.+++.+.+...+.||.+.+..
T Consensus       315 ~~~~l~~~~r~~~~~v~ipdrPGaL~~~l~~i~~~~~NI~~~~y~  359 (409)
T TIGR02079       315 RERSLLYEGLKHYFIVRFPQRPGALREFLNDVLGPNDDITRFEYT  359 (409)
T ss_pred             HHHHHHhcCCEEEEEEEeCCCCCHHHHHHHHHhcCCCcEEEEEee
Confidence            344556677778899999999999999999777788899998875

This model represents threonine dehydratase, the first step in the pathway converting threonine into isoleucine. At least two other clades of biosynthetic threonine dehydratases have been characterized by models TIGR01124 and TIGR01127. Those sequences described by this model are exclusively found in species containg the rest of the isoleucine pathway and which are generally lacking in members of the those other two clades of threonine dehydratases. Members of this clade are also often gene clustered with other elements of the isoleucine pathway.

>PRK06291 aspartate kinase; Provisional

Probab=84.80  E-value=20  Score=36.40  Aligned_cols=35  Identities=14%  Similarity=0.149  Sum_probs=31.1

Q ss_pred             cEEEEEEcC---CccchHHHHHHHHHhcCCeEeEeeee
Q 021895           42 HGIHVFHCP---DEVGIVAKLSECIASRGGNILAADVF   76 (306)
Q Consensus        42 k~ILTViGp---DRpGIVAaVS~~LAe~G~NIlD~sQ~   76 (306)
                      -.+|++.|.   +.+|+.+++.+.|+++|+||.-++|.
T Consensus       321 valIsI~g~~m~~~~g~~arvf~~L~~~gI~V~mIsq~  358 (465)
T PRK06291        321 VALINISGAGMVGVPGTAARIFSALAEEGVNVIMISQG  358 (465)
T ss_pred             EEEEEEeCCCCCCCccHHHHHHHHHHHCCCcEEEEEec
Confidence            357899886   68999999999999999999999885

>TIGR00290 MJ0570_dom MJ0570-related uncharacterized domain

Probab=84.32  E-value=6.8  Score=36.59  Aligned_cols=78  Identities=23%  Similarity=0.269  Sum_probs=47.7

Q ss_pred             ceEEEEEeCCcchHHHHHHhhhcCCCCeEEEEEeeCCCCCC--------C-hhHHHHHHhCCCCEEEeCCC-CCCh-HHH
Q 021895          129 YKVAVLASKQEHCLVDFLYGWQEGKLPVEITCVISNHDRGP--------N-SHVIRFLERHGIPYHYLCAK-ENER-EEE  197 (306)
Q Consensus       129 ~riavl~S~~g~~L~~ll~~~~~g~l~~~I~~Visn~~~~~--------~-~~~~~~A~~~gIp~~~~~~k-~~~~-e~e  197 (306)
                      +|++++.||.--+..+++.+.+.    .+|+++++-.+...        + .-+...|+..|||...+... ..+. +++
T Consensus         1 Mk~~~l~SGGKDS~~al~~a~~~----~~v~~L~t~~~~~~~s~~~H~~~~~~~~~qA~algipl~~~~~~~~~e~~~e~   76 (223)
T TIGR00290         1 MKVAALISGGKDSCLALYHALKE----HEVISLVNIMPENEESYMFHGVNAHLTDLQAESIGIPLIKLYTEGTEEDEVEE   76 (223)
T ss_pred             CcEEEEecCcHHHHHHHHHHHHh----CeeEEEEEEecCCCCcccccccCHHHHHHHHHHcCCCeEEeecCCCccHHHHH
Confidence            47888889876666677777655    36666655443321        1 23456789999998765422 1222 355


Q ss_pred             HHHHhc--CCcEEEE
Q 021895          198 LLELVQ--NTDFLVL  210 (306)
Q Consensus       198 ~~~~v~--~~D~vVl  210 (306)
                      +.+.++  .+|.+|.
T Consensus        77 l~~~l~~~gv~~vv~   91 (223)
T TIGR00290        77 LKGILHTLDVEAVVF   91 (223)
T ss_pred             HHHHHHHcCCCEEEE
Confidence            666665  6776664

Proteins with this uncharacterized domain include two apparent ortholog families in the Archaea, one of which is universal among the first four completed archaeal genomes, and YLR143W, a much longer protein from Saccharomyces cerevisiae. The domain comprises the full length of the archaeal proteins and the first third of the yeast protein.

>PRK08639 threonine dehydratase; Validated

Probab=83.97  E-value=2.6  Score=42.11  Aligned_cols=45  Identities=11%  Similarity=0.141  Sum_probs=36.9

Q ss_pred             ccCCCCCCcccEEEEEEcCCccchHHHHHHHHHhcCCeEeEeeee
Q 021895           32 IESSVSPTLTHGIHVFHCPDEVGIVAKLSECIASRGGNILAADVF   76 (306)
Q Consensus        32 ~~~~~~p~~~k~ILTViGpDRpGIVAaVS~~LAe~G~NIlD~sQ~   76 (306)
                      ++..+..+...+.+++.=|||||-.+++.+.+...+.||++++..
T Consensus       326 ~~~~l~~~~r~~~~~v~ipdrPGaL~~~l~~i~~~~~NI~~~~~~  370 (420)
T PRK08639        326 KERSLIYEGLKHYFIVNFPQRPGALREFLDDVLGPNDDITRFEYL  370 (420)
T ss_pred             HHHHHHhcCCEEEEEEEeCCCCCHHHHHHHHHhcCCCcEEEEEEe
Confidence            345556677778889999999999999999777777799999764

>PRK10622 pheA bifunctional chorismate mutase/prephenate dehydratase; Provisional

Probab=83.79  E-value=6.6  Score=39.31  Aligned_cols=68  Identities=6%  Similarity=-0.047  Sum_probs=44.7

Q ss_pred             cccEEEEEEcCCccchHHHHHHHHHhcCCeEeEeeeeccC-CCCeEEEEEEEEeCCCCCCHHHHHHHHHHHHhh
Q 021895           40 LTHGIHVFHCPDEVGIVAKLSECIASRGGNILAADVFVPE-KKNVFYSRSEFIFDPIKWPREQMDEDFFKLSKM  112 (306)
Q Consensus        40 ~~k~ILTViGpDRpGIVAaVS~~LAe~G~NIlD~sQ~id~-l~G~FfMrmeVdv~~~~~~~eeLreaL~~la~e  112 (306)
                      ....++++  +|+||-.+.+=+.++.+|+|...+..--.. ..+.|...++++  + ...-+.++++|+++.+.
T Consensus       297 ktsl~~~~--~~~pGaL~~~L~~Fa~~giNLtkIeSRP~~~~~~~Y~Ffid~e--g-~~~d~~~~~aL~~l~~~  365 (386)
T PRK10622        297 KTTLLMAT--GQQAGALVEALLVLRNHNLIMTKLESRPIHGNPWEEMFYLDVQ--A-NLRSAEMQKALKELGEI  365 (386)
T ss_pred             cEEEEEEc--CCCCcHHHHHHHHHHHcCCCeeEEEeeecCCCCceEEEEEEEe--C-CCCCHHHHHHHHHHHHh
Confidence            33344444  799999999999999999999998885221 123333334444  3 22345678888876543

>cd04935 ACT_AKiii-DAPDC_1 ACT domains of a bifunctional AKIII (LysC)-like aspartokinase/meso-diaminopimelate decarboxylase (DAPDC) bacterial protein

Probab=83.17  E-value=4.1  Score=31.32  Aligned_cols=27  Identities=15%  Similarity=0.154  Sum_probs=25.0

Q ss_pred             cCCccchHHHHHHHHHhcCCeEeEeee
Q 021895           49 CPDEVGIVAKLSECIASRGGNILAADV   75 (306)
Q Consensus        49 GpDRpGIVAaVS~~LAe~G~NIlD~sQ   75 (306)
                      .++.+|..++|-+.|+++|+|+.-+.|
T Consensus        11 ~~~~~g~~~~IF~~La~~~I~vDmI~~   37 (75)
T cd04935          11 MWQQVGFLADVFAPFKKHGVSVDLVST   37 (75)
T ss_pred             CCCccCHHHHHHHHHHHcCCcEEEEEe
Confidence            468899999999999999999999987

This CD includes the first of two ACT domains of a bifunctional AKIII (LysC)-like aspartokinase/meso-diaminopimelate decarboxylase (DAPDC) bacterial protein. Aspartokinase (AK) is the first enzyme in the aspartate metabolic pathway and catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. The lysA gene encodes the enzyme DAPDC, a pyridoxal-5'-phosphate (PLP)-dependent enzyme which catalyzes the final step in the lysine biosynthetic pathway converting meso-diaminopimelic acid (DAP) to l-lysine. Tandem ACT domains are positioned centrally with the AK catalytic domain N-terminal and the DAPDC domains C-terminal. Members of this CD belong to the superfamily of ACT regulatory domains.

>cd04921 ACT_AKi-HSDH-ThrA-like_1 ACT domains of the bifunctional enzyme aspartokinase (AK) - homoserine dehydrogenase (HSDH)

Probab=83.01  E-value=14  Score=27.51  Aligned_cols=34  Identities=18%  Similarity=0.219  Sum_probs=29.4

Q ss_pred             EEEEEEcC---CccchHHHHHHHHHhcCCeEeEeeee
Q 021895           43 GIHVFHCP---DEVGIVAKLSECIASRGGNILAADVF   76 (306)
Q Consensus        43 ~ILTViGp---DRpGIVAaVS~~LAe~G~NIlD~sQ~   76 (306)
                      .+|+++|.   +++|+.+++-+.|+++|+|+.-++|.
T Consensus         2 ~~I~vvg~~~~~~~~~~~~i~~~L~~~~I~v~~i~~~   38 (80)
T cd04921           2 ALINIEGTGMVGVPGIAARIFSALARAGINVILISQA   38 (80)
T ss_pred             EEEEEEcCCCCCCccHHHHHHHHHHHCCCcEEEEEec
Confidence            46778664   78899999999999999999999885

This CD includes the first of two ACT domains of the bifunctional enzyme aspartokinase (AK) - homoserine dehydrogenase (HSDH). The ACT domains are positioned between the N-terminal catalytic domain of AK and the C-terminal HSDH domain found in bacteria (Escherichia coli (EC) ThrA) and higher plants (Zea mays AK-HSDH). AK and HSDH are the first and third enzymes in the biosynthetic pathway of the aspartate family of amino acids. AK catalyzes the phosphorylation of Asp to P-aspartyl phosphate. HSDH catalyzes the NADPH-dependent conversion of Asp 3-semialdehyde to homoserine. HSDH is the first committed reaction in the branch of the pathway that leads to Thr and Met. In E. coli, ThrA is subject to allosteric regulation by the end product L-threonine and the native enzyme is reported to be tetrameric. As with bacteria, plant AK and HSDH are feedback inhibited by pat

>PF01902 ATP_bind_4: ATP-binding region; InterPro: IPR002761 This domain is about 200 amino acids long with a strongly conserved motif SGGKD at the N-terminal

Probab=82.50  E-value=4.1  Score=37.81  Aligned_cols=78  Identities=19%  Similarity=0.282  Sum_probs=42.5

Q ss_pred             ceEEEEEeCCcchHHHHHHhhhcCCCCeEEEEEeeCCCCCCC---------hhHHHHHHhCCCCEEEeCCC--CCChHHH
Q 021895          129 YKVAVLASKQEHCLVDFLYGWQEGKLPVEITCVISNHDRGPN---------SHVIRFLERHGIPYHYLCAK--ENEREEE  197 (306)
Q Consensus       129 ~riavl~S~~g~~L~~ll~~~~~g~l~~~I~~Visn~~~~~~---------~~~~~~A~~~gIp~~~~~~k--~~~~e~e  197 (306)
                      ||++++-||.--+..++..+.+.    .+|++.++-.+...+         .-+..-|+..|||......+  .....++
T Consensus         1 Mk~v~l~SGGKDS~lAl~~a~~~----~~v~~L~t~~~~~~~s~~~H~~~~~~~~~qA~algipl~~~~~~g~~~~~~~~   76 (218)
T PF01902_consen    1 MKVVALWSGGKDSCLALYRALRQ----HEVVCLLTMVPEEEDSYMFHGVNIELIEAQAEALGIPLIEIPTSGDEEDYVED   76 (218)
T ss_dssp             -EEEEE--SSHHHHHHHHHHHHT-----EEEEEEEEEESTTT-SSS-STTGTCHHHHHHHHT--EEEEEE---CCCHHHH
T ss_pred             CcEEEEEcCcHHHHHHHHHHHHh----CCccEEEEeccCCCCcccccccCHHHHHHHHHHCCCCEEEEEccCccchhhHH
Confidence            58999999875555567666554    567666653322111         23566789999999887743  2233467


Q ss_pred             HHHHhc--CCcEEEE
Q 021895          198 LLELVQ--NTDFLVL  210 (306)
Q Consensus       198 ~~~~v~--~~D~vVl  210 (306)
                      +.+.++  ++|-+|.
T Consensus        77 l~~~l~~~~v~~vv~   91 (218)
T PF01902_consen   77 LKEALKELKVEAVVF   91 (218)
T ss_dssp             HHHHHCTC--SEEE-
T ss_pred             HHHHHHHcCCCEEEE
Confidence            777776  6776654

The structure of Q8U2K6 from SWISSPROT from Pyrococcus furiosus has been resolved to 2.7A and is suggested to be a putative N-type pytophosphatase. In some members of the family e.g. Q12429 from SWISSPROT, this domain is associated with IPR006175 from INTERPRO, another domain of unknown function. Proteins with this uncharacterised domain include two apparent ortholog families in the archaea, one of which is universal among the first four completed archaeal genomes. The domain comprises the full length of the archaeal proteins and the first third of fungal proteins.; PDB: 3RK0_A 3RK1_A 3RJZ_A 2D13_D.

>cd04936 ACT_AKii-LysC-BS-like_2 ACT domains of the lysine-sensitive, aspartokinase (AK) isoenzyme AKII of Bacillus subtilis (BS) strain 168 and related domains

Probab=82.19  E-value=13  Score=25.81  Aligned_cols=32  Identities=25%  Similarity=0.215  Sum_probs=27.6

Q ss_pred             EEEEEc---CCccchHHHHHHHHHhcCCeEeEeee
Q 021895           44 IHVFHC---PDEVGIVAKLSECIASRGGNILAADV   75 (306)
Q Consensus        44 ILTViG---pDRpGIVAaVS~~LAe~G~NIlD~sQ   75 (306)
                      .+++.|   ++.+|+.+++.+.|+++|+|+.-+++
T Consensus         2 ~i~v~g~~~~~~~~~~~~i~~~L~~~~i~v~~i~~   36 (63)
T cd04936           2 KVSIVGAGMRSHPGVAAKMFEALAEAGINIEMIST   36 (63)
T ss_pred             EEEEECCCCCCCccHHHHHHHHHHHCCCcEEEEEc
Confidence            467776   47789999999999999999988876

This CD includes the C-terminal of the two ACT domains of the lysine-sensitive, aspartokinase (AK) isoenzyme AKII of Bacillus subtilis (BS) strain 168, and the lysine plus threonine-sensitive aspartokinase of Corynebacterium glutamicum, and related sequences. In B. subtilis strain 168, the regulation of the diaminopimelate (Dap)-lysine biosynthetic pathway involves dual control by Dap and lysine, effected through separate Dap- and lysine-sensitive AK isoenzymes. The B. subtilis strain 168 AKII is induced by methionine and repressed and inhibited by lysine. Although C. glutamicum is known to contain a single AK, both the succinylase and dehydrogenase variant pathways of DAP-lysine synthesis operate simultaneously in this organism. In corynebacteria and other various Gram-positive bacteria, the DAP-lysine pathway is feedback regu

>PF01171 ATP_bind_3: PP-loop family; InterPro: IPR011063 This entry represents the PP-loop motif superfamily [,]

Probab=82.10  E-value=9.6  Score=33.20  Aligned_cols=58  Identities=21%  Similarity=0.277  Sum_probs=38.8

Q ss_pred             eEEEEEeCCc--chHHHHHHhhhcCCCCeEEEEEeeCCCCCCC-----hhHHHHHHhCCCCEEEeC
Q 021895          130 KVAVLASKQE--HCLVDFLYGWQEGKLPVEITCVISNHDRGPN-----SHVIRFLERHGIPYHYLC  188 (306)
Q Consensus       130 riavl~S~~g--~~L~~ll~~~~~g~l~~~I~~Visn~~~~~~-----~~~~~~A~~~gIp~~~~~  188 (306)
                      ||+|-+||..  .+|-.+|..++. ..+.++.+|..||.-.+.     ..+.++|+++|||+++..
T Consensus         1 ki~va~SGG~DS~~Ll~~l~~~~~-~~~~~~~~~~vdh~~~~~s~~~~~~v~~~~~~~~i~~~~~~   65 (182)
T PF01171_consen    1 KILVAVSGGKDSMALLHLLKELRR-RNGIKLIAVHVDHGLREESDEEAEFVEEICEQLGIPLYIVR   65 (182)
T ss_dssp             EEEEE--SSHHHHHHHHHHHHHHT-TTTTEEEEEEEE-STSCCHHHHHHHHHHHHHHTT-EEEEEE
T ss_pred             CEEEEEcCCHHHHHHHHHHHHHHH-hcCCCeEEEEEecCCCcccchhHHHHHHHHHhcCCceEEEE
Confidence            7899999863  566666666543 335689999988843333     368899999999999876

The PP-loop motif appears to be a modified version of the P-loop of nucleotide binding domain that is involved in phosphate binding []. Named PP-motif, since it appears to be a part of a previously uncharacterised ATP pyrophophatase domain. ATP sulfurylases, Escherichia coli NtrL, and Bacillus subtilis OutB consist of this domain alone. In other proteins, the pyrophosphatase domain is associated with amidotransferase domains (type I or type II), a putative citrulline-aspartate ligase domain or a nitrilase/amidase domain.; PDB: 3A2K_A 2E89_B 2E21_D 1WY5_B 1NI5_A.

>cd04923 ACT_AK-LysC-DapG-like_2 ACT domains of the lysine-sensitive aspartokinase isoenzyme AKII of Bacillus subtilis (BS) strain 168 and related domains

Probab=81.71  E-value=14  Score=25.65  Aligned_cols=32  Identities=22%  Similarity=0.190  Sum_probs=27.9

Q ss_pred             EEEEEc---CCccchHHHHHHHHHhcCCeEeEeee
Q 021895           44 IHVFHC---PDEVGIVAKLSECIASRGGNILAADV   75 (306)
Q Consensus        44 ILTViG---pDRpGIVAaVS~~LAe~G~NIlD~sQ   75 (306)
                      .+++.|   ++.+|+.+++.+.|+++|+|+.-+++
T Consensus         2 ~v~v~g~~~~~~~~~~~~i~~~L~~~~i~v~~i~~   36 (63)
T cd04923           2 KVSIVGAGMRSHPGVAAKMFKALAEAGINIEMIST   36 (63)
T ss_pred             EEEEECCCCCCCccHHHHHHHHHHHCCCCEEEEEc
Confidence            467877   46799999999999999999998876

This CD includes the C-terminal of the two ACT domains of the lysine-sensitive aspartokinase isoenzyme AKII of Bacillus subtilis (BS) strain 168, and the lysine plus threonine-sensitive aspartokinase of Corynebacterium glutamicum, as well as, the second and fourth, of four, ACT domains present in cyanobacteria AK. Also included are the C-terminal of the two ACT domains of the diaminopimelate-sensitive aspartokinase isoenzyme AKI found in Bacilli (B. subtilis strain 168), Clostridia, and Actinobacteria bacterial species. Members of this CD belong to the superfamily of ACT regulatory domains.

>cd04933 ACT_AK1-AT_1 ACT domains located C-terminal to the catalytic domain of a monofunctional, lysine-sensitive, plant aspartate kinase 1 (AK1)

Probab=81.51  E-value=6.5  Score=30.85  Aligned_cols=27  Identities=15%  Similarity=0.161  Sum_probs=25.2

Q ss_pred             cCCccchHHHHHHHHHhcCCeEeEeee
Q 021895           49 CPDEVGIVAKLSECIASRGGNILAADV   75 (306)
Q Consensus        49 GpDRpGIVAaVS~~LAe~G~NIlD~sQ   75 (306)
                      .++.+|..++|-+.|+++|+||.-+.|
T Consensus        11 ~~~~~g~~a~IF~~La~~~InVDmI~q   37 (78)
T cd04933          11 MLGQYGFLAKVFSIFETLGISVDVVAT   37 (78)
T ss_pred             CCCccCHHHHHHHHHHHcCCcEEEEEe
Confidence            478899999999999999999999987

This CD includes the first of two ACT domains located C-terminal to the catalytic domain of a monofunctional, lysine-sensitive, plant aspartate kinase 1 (AK1), which can be synergistically inhibited by S-adenosylmethionine. This isoenzyme is found in higher plants, Arabidopsis thaliana (AT) and Zea mays, and also in Chlorophyta. Like the Escherichia coli AKIII (LysC), Arabidopsis AK1 binds two feedback allosteric inhibitor lysine molecules at the dimer interface located between the ACT1 domain of two subunits. A loop in common is involved in the binding of both Lys and S-adenosylmethionine providing an explanation for the synergistic inhibition by these effectors. Members of this CD belong to the superfamily of ACT regulatory domains.

>COG2061 ACT-domain-containing protein, predicted allosteric regulator of homoserine dehydrogenase [Amino acid transport and metabolism]

Probab=81.24  E-value=33  Score=31.11  Aligned_cols=105  Identities=13%  Similarity=0.042  Sum_probs=69.7

Q ss_pred             cccEEEEEEcCCccchHHHHHHHHHhcCCeEeEeeeeccCC-CCeEEEEEEEEeCCCCCCHHHHHHHHHHHHhhhhcccc
Q 021895           40 LTHGIHVFHCPDEVGIVAKLSECIASRGGNILAADVFVPEK-KNVFYSRSEFIFDPIKWPREQMDEDFFKLSKMFNAMRS  118 (306)
Q Consensus        40 ~~k~ILTViGpDRpGIVAaVS~~LAe~G~NIlD~sQ~id~l-~G~FfMrmeVdv~~~~~~~eeLreaL~~la~elgl~~~  118 (306)
                      .|++-+.+-=+|+||-.-.|=+=|.+.|+||+.+-..-+.. +++-...+.|+.+.    .+..++-...+ ++.|..  
T Consensus         3 ~mritldIEL~D~PGQLl~vLqPls~~g~NiItIiH~r~kk~g~r~pV~i~~~~d~----~~~~~~i~~~~-e~~Gi~--   75 (170)
T COG2061           3 QMRITLDIELKDKPGQLLKVLQPLSKTGANIITIIHSRDKKYGPRVPVQIVFEGDR----EDKDAKIIRLL-EEEGII--   75 (170)
T ss_pred             ceEEEEEEEecCCCcchhhhhcchhhcCccEEEEEeecCcccCCceeEEEEEEecc----cHHHHHHHHHH-HhCCcE--
Confidence            46777788889999999999889999999999976653322 56677777777653    23333333333 555642  


Q ss_pred             eeeecCCCCCceEEEEEeCC--cchHHHHHHhhhc
Q 021895          119 VVRVPDIDPKYKVAVLASKQ--EHCLVDFLYGWQE  151 (306)
Q Consensus       119 ~~rl~~~~~~~riavl~S~~--g~~L~~ll~~~~~  151 (306)
                      ..++...+.+-+.-|+.=|.  .+++++-++++..
T Consensus        76 I~~~dg~~~~~~~~vvLIGhiv~tdiqDTId~In~  110 (170)
T COG2061          76 IIRFDGARLREKTDVVLIGHIVHTDIQDTIDRINS  110 (170)
T ss_pred             EEEecCcCcceeEeEEEEEeeecCcHHHHHHHhhc
Confidence            34554544555555554444  4899999988753

>TIGR03215 ac_ald_DH_ac acetaldehyde dehydrogenase (acetylating)

Probab=80.13  E-value=9.2  Score=36.89  Aligned_cols=70  Identities=21%  Similarity=0.234  Sum_probs=43.0

Q ss_pred             CceEEEEEeCC-cchH-HHHHHhhhcCCCCeEEEEEeeCCCCCCChhHHHHHHhCCCCEEEeCCCCCChHHHHHHHhcCC
Q 021895          128 KYKVAVLASKQ-EHCL-VDFLYGWQEGKLPVEITCVISNHDRGPNSHVIRFLERHGIPYHYLCAKENEREEELLELVQNT  205 (306)
Q Consensus       128 ~~riavl~S~~-g~~L-~~ll~~~~~g~l~~~I~~Visn~~~~~~~~~~~~A~~~gIp~~~~~~k~~~~e~e~~~~v~~~  205 (306)
                      |.||+|+++|. |+.+ ..++.   .+  ..++++|+...   +++..+++|+++|+|+.+-.      .+++++. .++
T Consensus         1 klrVAIIG~G~IG~~h~~~ll~---~~--~~elvaV~d~d---~es~~la~A~~~Gi~~~~~~------~e~ll~~-~dI   65 (285)
T TIGR03215         1 KVKVAIIGSGNIGTDLMYKLLR---SE--HLEMVAMVGID---PESDGLARARELGVKTSAEG------VDGLLAN-PDI   65 (285)
T ss_pred             CcEEEEEeCcHHHHHHHHHHHh---CC--CcEEEEEEeCC---cccHHHHHHHHCCCCEEECC------HHHHhcC-CCC
Confidence            46999999987 4433 34432   22  37888887643   34456789999999987621      1222221 157


Q ss_pred             cEEEEec
Q 021895          206 DFLVLAR  212 (306)
Q Consensus       206 D~vVlA~  212 (306)
                      |+|+.+-
T Consensus        66 DaV~iaT   72 (285)
T TIGR03215        66 DIVFDAT   72 (285)
T ss_pred             CEEEECC
Confidence            7777754

Members of this protein family are acetaldehyde dehydrogenase (acetylating), EC 1.2.1.10. This enzyme oxidizes acetaldehyde, using NAD(+), and attaches coenzyme A (CoA), yielding acetyl-CoA. It occurs as a late step in the meta-cleavage pathways of a variety of compounds, including catechol, biphenyl, toluene, salicylate, etc.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	306
3o1l_A	302	Crystal Structure Of A Formyltetrahydrofolate Defor		1e-21
3obi_A	288	Crystal Structure Of A Formyltetrahydrofolate Defor		1e-14
3nrb_A	287	Crystal Structure Of A Formyltetrahydrofolate Defor		4e-14
3lou_A	292	Crystal Structure Of Formyltetrahydrofolate Deformy		5e-11
3n0v_A	286	Crystal Structure Of A Formyltetrahydrofolate Defor		6e-11

>pdb|3O1L|A Chain A, Crystal Structure Of A Formyltetrahydrofolate Deformylase (Pspto_4314) From Pseudomonas Syringae Pv. Tomato Str. Dc3000 At 2.20 A Resolution Length = 302

Iteration: 1
 Score =  100 bits (249), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 73/240 (30%), Positives = 99/240 (41%), Gaps = 43/240 (17%)
Query: 46  VFHCPDEVGIVAKLSECIASRGGNILAADVFVPEKKNVFYSRSEFIFDPIKWPREQMDED 105
           V  CPD VGIVAK+S  +AS  G I  A          F+ R E   D + +  +   E 
Sbjct: 26  VIACPDRVGIVAKVSNFLASHNGWITEASHHSDNLSGWFFXRHEIRADTLPFDLDGFREA 85
Query: 106 FFKLSKMFNAMRSVVRVPDIDPKYKVAVLASKQEHCLVDFLYGWQEGKLPVEITCVISNH 165
           F  +++ F+      R+ D   K +V + AS++ HCL D L+ W   +L  +I CVISNH
Sbjct: 86  FTPIAEEFSXD---WRITDSAQKKRVVLXASRESHCLADLLHRWHSDELDCDIACVISNH 142
Query: 166 DRGPNSHVIRFLERHGIPYHYLCAKXXXXXXXXXXXVQ-----NTDFLVLARYMQPVPLQ 220
                  +   +E H IPY+++               +       D +VLARY Q +P Q
Sbjct: 143 -----QDLRSXVEWHDIPYYHVPVDPKDKEPAFAEVSRLVGHHQADVVVLARYXQILPPQ 197
Query: 221 KEAXXXXXXXXXXXXXXXXXXXFNMILSGKFLRSYGKDVINIHHGLLPSFKGGKPAKQVG 280
                                           R Y   VINIHH  LPSF G KP  Q  
Sbjct: 198 ------------------------------LCREYAHQVINIHHSFLPSFVGAKPYHQAS 227

>pdb|3OBI|A Chain A, Crystal Structure Of A Formyltetrahydrofolate Deformylase (Np_949368) From Rhodopseudomonas Palustris Cga009 At 1.95 A Resolution Length = 288

Iteration: 1
 Score = 77.4 bits (189), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 67/236 (28%), Positives = 89/236 (37%), Gaps = 42/236 (17%)
Query: 49  CPDEVGIVAKLSECIASRGGNILAADVFVPEKKNVFYSRSEFIFDPIKWPREQMDEDFFK 108
           CPD  GIV+ +S  +   G NIL A  +   +   F+ R  F       P   +   F  
Sbjct: 13  CPDRAGIVSAVSTFLFENGQNILDAQQYNDTESGHFFXRVVFNAAAKVIPLASLRTGFGV 72
Query: 109 LSKMFNAMRSVVRVPDIDPKYKVAVLASKQEHCLVDFLYGWQEGKLPVEITCVISNHDRG 168
           ++  F          D + + KV +L S+ +HCL D LY W+ G L    T ++SNH R 
Sbjct: 73  IAAKFTXG---WHXRDRETRRKVXLLVSQSDHCLADILYRWRVGDLHXIPTAIVSNHPRE 129
Query: 169 PNSHVIRFLERHGIP-YHYLCAKXXXXXXXXXXXV----QNTDFLVLARYMQPVPLQKEA 223
             S      +   IP YH+   K                 +TD +VLARY Q        
Sbjct: 130 TFSG----FDFGDIPFYHFPVNKDTRRQQEAAITALIAQTHTDLVVLARYXQ-------- 177
Query: 224 XXXXXXXXXXXXXXXXXXXFNMILSGKFLRSYGKDVINIHHGLLPSFKGGKPAKQV 279
                                 ILS +         INIHH  LP FKG KP  Q 
Sbjct: 178 ----------------------ILSDEXSARLAGRCINIHHSFLPGFKGAKPYHQA 211

>pdb|3NRB|A Chain A, Crystal Structure Of A Formyltetrahydrofolate Deformylase (Puru, Pp_1943) From Pseudomonas Putida Kt2440 At 2.05 A Resolution Length = 287

Iteration: 1
 Score = 75.1 bits (183), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 71/235 (30%), Positives = 99/235 (42%), Gaps = 44/235 (18%)
Query: 49  CPDEVGIVAKLSECIASRGGNILAADVFVPEKKNVFYSRSEFIFDPIKWPREQMDEDFFK 108
           C D  GIV+++S  + + G NI+ A+ F  E  + F+ R      P+    +  +  F K
Sbjct: 14  CQDAPGIVSEVSTFLFNNGANIVEAEQFNDEDSSKFFXRVSVEI-PVAGVND-FNSAFGK 71
Query: 109 LSKMFNAMRSVVRVPDIDPKYKVAVLASKQEHCLVDFLYGWQEGKLPVEITCVISNHDRG 168
           + + +NA       P  D K KV +  SK +HCL D LY  + G+L  E+  +ISNH R 
Sbjct: 72  VVEKYNAEWWFR--PRTDRK-KVVIXVSKFDHCLGDLLYRHRLGELDXEVVGIISNHPRE 128
Query: 169 PNSHVIRFLERHGIPYHYL----CAKXXXXXXXXXXXVQN-TDFLVLARYMQPVPLQKEA 223
             S  +       IP+HYL      K            Q+  D +VLARY Q +      
Sbjct: 129 ALSVSL----VGDIPFHYLPVTPATKAAQESQIKNIVTQSQADLIVLARYXQILS----- 179
Query: 224 XXXXXXXXXXXXXXXXXXXFNMILSGKFLRSYGKDVINIHHGLLPSFKGGKPAKQ 278
                               +  LSG+         INIHH  LP FKG KP  Q
Sbjct: 180 -----------------DDLSAFLSGR--------CINIHHSFLPGFKGAKPYHQ 209

>pdb|3LOU|A Chain A, Crystal Structure Of Formyltetrahydrofolate Deformylase (yp_105254.1) From Burkholderia Mallei Atcc 23344 At 1.90 A Resolution Length = 292

Iteration: 1
 Score = 65.1 bits (157), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 60/238 (25%), Positives = 91/238 (38%), Gaps = 47/238 (19%)
Query: 49  CPDEVGIVAKLSECIASRGGNILAADVFVPEKKNVFYSRSEF--IFDPIKWPREQMDEDF 106
           CP   G VA +   +      +    VF  +    F+ R  F    D      + +  +F
Sbjct: 17  CPSAAGQVAAVVGLLDRHRCYVDELTVFDDDLSARFFVRCVFHATDDADALRVDALRREF 76
Query: 107 FKLSKMFNAMRSVVRVPDIDPKYKVAVLASKQEHCLVDFLYGWQEGKLPVEITCVISNH- 165
             +++ F   R    + D+  + KV +  SK EHCL D L+ W+ G+L  +I  ++SNH 
Sbjct: 77  EPIAERF---RXQWAIHDVAARPKVLIXVSKLEHCLADLLFRWKXGELKXDIVGIVSNHP 133
Query: 166 DRGPNSHVIRFLERHGIPYHY--LCAKXXXXXXXXXXXVQNT---DFLVLARYMQPVPLQ 220
           D  P         +HG+P+ +  + A            V  T   + ++LARY Q     
Sbjct: 134 DFAP------LAAQHGLPFRHFPITADTKAQQEAQWLDVFETSGAELVILARYXQ----- 182
Query: 221 KEAXXXXXXXXXXXXXXXXXXXFNMILSGKFLRSYGKDVINIHHGLLPSFKGGKPAKQ 278
                                    +LS +         INIHH  LP FKG KP  Q
Sbjct: 183 -------------------------VLSPEASARLANRAINIHHSFLPGFKGAKPYHQ 215

>pdb|3N0V|A Chain A, Crystal Structure Of A Formyltetrahydrofolate Deformylase (Pp_0327) From Pseudomonas Putida Kt2440 At 2.25 A Resolution Length = 286

Iteration: 1
 Score = 64.7 bits (156), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 61/239 (25%), Positives = 93/239 (38%), Gaps = 50/239 (20%)
Query: 49  CPDEVGIVAKLSECIASRGGNILAADVFVPEKKNVFYSRSEFIFDPIKWPREQMDEDFFK 108
           CP  +G V  ++  +  +   +     F   +   F+ R EF     + P +  DE  F+
Sbjct: 15  CPSXLGTVDVVTRYLFEQRCYVTEHHSFDDRQSGRFFIRVEF-----RQP-DDFDEAGFR 68
Query: 109 --LSKMFNAMRSVVRVPDIDPKYKVAVLASKQEHCLVDFLYGWQEGKLPVEITCVISNH- 165
             L++   A      +   + + KV +  SK +HCL D LY  + G+L  ++  V+SNH 
Sbjct: 69  AGLAERSEAFGXAFELTAPNHRPKVVIXVSKADHCLNDLLYRQRIGQLGXDVVAVVSNHP 128
Query: 166 DRGPNSHVIRFLERHGIPYHYLCAKXXXXXXXXXXXVQ-----NTDFLVLARYMQPVPLQ 220
           D  P +H       H IPY++               +Q       + ++LARY Q     
Sbjct: 129 DLEPLAHW------HKIPYYHFALDPKDKPGQERKVLQVIEETGAELVILARYXQ----- 177
Query: 221 KEAXXXXXXXXXXXXXXXXXXXFNMILSGKFLRSYGKDVINIHHGLLPSFKGGKPAKQV 279
                                    +LS +  R      INIHH LLP FKG KP  Q 
Sbjct: 178 -------------------------VLSPELCRRLDGWAINIHHSLLPGFKGAKPYHQA 211

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	306
3o1l_A	302	Formyltetrahydrofolate deformylase; structural gen	5e-78
3obi_A	288	Formyltetrahydrofolate deformylase; structural gen	5e-77
3lou_A	292	Formyltetrahydrofolate deformylase; structural gen	1e-76
3n0v_A	286	Formyltetrahydrofolate deformylase; formyl transfe	4e-76
3nrb_A	287	Formyltetrahydrofolate deformylase; N-terminal ACT	3e-72
3kcq_A	215	Phosphoribosylglycinamide formyltransferase; struc	3e-16
4ds3_A	209	Phosphoribosylglycinamide formyltransferase; struc	7e-16
3p9x_A	211	Phosphoribosylglycinamide formyltransferase; struc	1e-15
3av3_A	212	Phosphoribosylglycinamide formyltransferase; struc	1e-15
3auf_A	229	Glycinamide ribonucleotide transformylase 1; struc	2e-15
1meo_A	209	Phosophoribosylglycinamide formyltransferase; puri	2e-15
1jkx_A	212	GART;, phosphoribosylglycinamide formyltransferase	3e-15
2ywr_A	216	Phosphoribosylglycinamide formyltransferase; rossm	3e-15
3da8_A	215	Probable 5'-phosphoribosylglycinamide formyltransf	4e-15
3tqr_A	215	Phosphoribosylglycinamide formyltransferase; purin	7e-15
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	1e-09
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	6e-08

>3o1l_A Formyltetrahydrofolate deformylase; structural genomics, joint center for structural genomics, J protein structure initiative; HET: MSE; 2.20A {Pseudomonas syringae PV} Length = 302

 Score =  238 bits (610), Expect = 5e-78
 Identities = 78/254 (30%), Positives = 109/254 (42%), Gaps = 43/254 (16%)

Query: 30  EPIESSVSPTLTHGIHVFHCPDEVGIVAKLSECIASRGGNILAADVFVPEKKNVFYSRSE 89
              E+     +     V  CPD VGIVAK+S  +AS  G I  A          F+ R E
Sbjct: 10  HHHENLYFQGMRTFRLVIACPDRVGIVAKVSNFLASHNGWITEASHHSDNLSGWFFMRHE 69

Query: 90  FIFDPIKWPREQMDEDFFKLSKMFNAMRSVVRVPDIDPKYKVAVLASKQEHCLVDFLYGW 149
              D + +  +   E F  +++ F+      R+ D   K +V ++AS++ HCL D L+ W
Sbjct: 70  IRADTLPFDLDGFREAFTPIAEEFSM---DWRITDSAQKKRVVLMASRESHCLADLLHRW 126

Query: 150 QEGKLPVEITCVISNHDRGPNSHVIRFLERHGIPYHYL-CAKEN--EREEELLELVQ--N 204
              +L  +I CVISNH       +   +E H IPY+++    ++      E+  LV    
Sbjct: 127 HSDELDCDIACVISNHQ-----DLRSMVEWHDIPYYHVPVDPKDKEPAFAEVSRLVGHHQ 181

Query: 205 TDFLVLARYMQPVPLQKEAYLGYKLLESLSSKGSLTSYFNMILSGKFLRSYGKDVINIHH 264
            D +VLARYMQ                              IL  +  R Y   VINIHH
Sbjct: 182 ADVVVLARYMQ------------------------------ILPPQLCREYAHQVINIHH 211

Query: 265 GLLPSFKGGKPAKQ 278
             LPSF G KP  Q
Sbjct: 212 SFLPSFVGAKPYHQ 225

>3obi_A Formyltetrahydrofolate deformylase; structural genomics, joint center for structural genomics, J protein structure initiative; HET: MSE; 1.95A {Rhodopseudomonas palustris} Length = 288

 Score =  235 bits (602), Expect = 5e-77
 Identities = 67/245 (27%), Positives = 99/245 (40%), Gaps = 42/245 (17%)

Query: 39  TLTHGIHVFHCPDEVGIVAKLSECIASRGGNILAADVFVPEKKNVFYSRSEFIFDPIKWP 98
                +    CPD  GIV+ +S  +   G NIL A  +   +   F+ R  F       P
Sbjct: 3   PHHQYVLTLSCPDRAGIVSAVSTFLFENGQNILDAQQYNDTESGHFFMRVVFNAAAKVIP 62

Query: 99  REQMDEDFFKLSKMFNAMRSVVRVPDIDPKYKVAVLASKQEHCLVDFLYGWQEGKLPVEI 158
              +   F  ++  F        + D + + KV +L S+ +HCL D LY W+ G L +  
Sbjct: 63  LASLRTGFGVIAAKFTM---GWHMRDRETRRKVMLLVSQSDHCLADILYRWRVGDLHMIP 119

Query: 159 TCVISNHDRGPNSHVIRFLERHGIPYHYL-CAKEN--EREEELLELVQ--NTDFLVLARY 213
           T ++SNH R          +   IP+++    K+   ++E  +  L+   +TD +VLARY
Sbjct: 120 TAIVSNHPR----ETFSGFDFGDIPFYHFPVNKDTRRQQEAAITALIAQTHTDLVVLARY 175

Query: 214 MQPVPLQKEAYLGYKLLESLSSKGSLTSYFNMILSGKFLRSYGKDVINIHHGLLPSFKGG 273
           MQ                              ILS +         INIHH  LP FKG 
Sbjct: 176 MQ------------------------------ILSDEMSARLAGRCINIHHSFLPGFKGA 205

Query: 274 KPAKQ 278
           KP  Q
Sbjct: 206 KPYHQ 210

>3lou_A Formyltetrahydrofolate deformylase; structural genomics, JOI for structural genomics, JCSG, protein structure initiative hydrolase; HET: MSE; 1.90A {Burkholderia mallei} Length = 292

 Score =  235 bits (601), Expect = 1e-76
 Identities = 59/251 (23%), Positives = 100/251 (39%), Gaps = 45/251 (17%)

Query: 35  SVSPTLTHGIHVFHCPDEVGIVAKLSECIASRGGNILAADVFVPEKKNVFYSRSEF--IF 92
           SV       +    CP   G VA +   +      +    VF  +    F+ R  F    
Sbjct: 3   SVPQRPHQFVLTLSCPSAAGQVAAVVGLLDRHRCYVDELTVFDDDLSARFFVRCVFHATD 62

Query: 93  DPIKWPREQMDEDFFKLSKMFNAMRSVVRVPDIDPKYKVAVLASKQEHCLVDFLYGWQEG 152
           D      + +  +F  +++ F        + D+  + KV ++ SK EHCL D L+ W+ G
Sbjct: 63  DADALRVDALRREFEPIAERFRMQ---WAIHDVAARPKVLIMVSKLEHCLADLLFRWKMG 119

Query: 153 KLPVEITCVISNHDRGPNSHVIRFLERHGIPYHYL-CAKEN--EREEELLELVQNT--DF 207
           +L ++I  ++SNH             +HG+P+ +     +   ++E + L++ + +  + 
Sbjct: 120 ELKMDIVGIVSNHP-----DFAPLAAQHGLPFRHFPITADTKAQQEAQWLDVFETSGAEL 174

Query: 208 LVLARYMQPVPLQKEAYLGYKLLESLSSKGSLTSYFNMILSGKFLRSYGKDVINIHHGLL 267
           ++LARYMQ                              +LS +         INIHH  L
Sbjct: 175 VILARYMQ------------------------------VLSPEASARLANRAINIHHSFL 204

Query: 268 PSFKGGKPAKQ 278
           P FKG KP  Q
Sbjct: 205 PGFKGAKPYHQ 215

>3n0v_A Formyltetrahydrofolate deformylase; formyl transferase, ACT domain, structural genomics, joint C structural genomics, JCSG; HET: MSE; 2.25A {Pseudomonas putida} Length = 286

 Score =  233 bits (596), Expect = 4e-76
 Identities = 58/247 (23%), Positives = 98/247 (39%), Gaps = 44/247 (17%)

Query: 37  SPTLTHGIHVFHCPDEVGIVAKLSECIASRGGNILAADVFVPEKKNVFYSRSEFIFDPIK 96
           S      I    CP  +G V  ++  +  +   +     F   +   F+ R EF      
Sbjct: 3   SRAPDTWILTADCPSMLGTVDVVTRYLFEQRCYVTEHHSFDDRQSGRFFIRVEFRQPD-D 61

Query: 97  WPREQMDEDFFKLSKMFNAMRSVVRVPDIDPKYKVAVLASKQEHCLVDFLYGWQEGKLPV 156
           +          + S+ F        +   + + KV ++ SK +HCL D LY  + G+L +
Sbjct: 62  FDEAGFRAGLAERSEAFGM---AFELTAPNHRPKVVIMVSKADHCLNDLLYRQRIGQLGM 118

Query: 157 EITCVISNHDRGPNSHVIRFLERHGIPYHYL-CAKEN--EREEELLELVQ--NTDFLVLA 211
           ++  V+SNH       +      H IPY++     ++   +E ++L++++    + ++LA
Sbjct: 119 DVVAVVSNHP-----DLEPLAHWHKIPYYHFALDPKDKPGQERKVLQVIEETGAELVILA 173

Query: 212 RYMQPVPLQKEAYLGYKLLESLSSKGSLTSYFNMILSGKFLRSYGKDVINIHHGLLPSFK 271
           RYMQ                              +LS +  R      INIHH LLP FK
Sbjct: 174 RYMQ------------------------------VLSPELCRRLDGWAINIHHSLLPGFK 203

Query: 272 GGKPAKQ 278
           G KP  Q
Sbjct: 204 GAKPYHQ 210

>3nrb_A Formyltetrahydrofolate deformylase; N-terminal ACT domain, structural genomics, joint center for structural genomics, JCSG; HET: MSE FLC; 2.05A {Pseudomonas putida} Length = 287

 Score =  223 bits (571), Expect = 3e-72
 Identities = 67/246 (27%), Positives = 97/246 (39%), Gaps = 44/246 (17%)

Query: 38  PTLTHGIHVFHCPDEVGIVAKLSECIASRGGNILAADVFVPEKKNVFYSRSEFIFDPIKW 97
                 +    C D  GIV+++S  + + G NI+ A+ F  E  + F+ R          
Sbjct: 3   NKNNQYVLSLACQDAPGIVSEVSTFLFNNGANIVEAEQFNDEDSSKFFMRVSVEIPVAG- 61

Query: 98  PREQMDEDFFKLSKMFNAMRSVVRVPDIDPKYKVAVLASKQEHCLVDFLYGWQEGKLPVE 157
                +  F K+ + +NA            + KV ++ SK +HCL D LY  + G+L +E
Sbjct: 62  -VNDFNSAFGKVVEKYNA---EWWFRPRTDRKKVVIMVSKFDHCLGDLLYRHRLGELDME 117

Query: 158 ITCVISNHDRGPNSHVIRFLERHGIPYHYL-CAKEN--EREEELLELVQ--NTDFLVLAR 212
           +  +ISNH R      +       IP+HYL         +E ++  +V     D +VLAR
Sbjct: 118 VVGIISNHPR----EALSVSLVGDIPFHYLPVTPATKAAQESQIKNIVTQSQADLIVLAR 173

Query: 213 YMQPVPLQKEAYLGYKLLESLSSKGSLTSYFNMILSGKFLRSYGKDVINIHHGLLPSFKG 272
           YMQ                              ILS           INIHH  LP FKG
Sbjct: 174 YMQ------------------------------ILSDDLSAFLSGRCINIHHSFLPGFKG 203

Query: 273 GKPAKQ 278
            KP  Q
Sbjct: 204 AKPYHQ 209

>3kcq_A Phosphoribosylglycinamide formyltransferase; structural genomics, niaid, seattle structural center for infectious disease, ssgcid; 2.20A {Anaplasma phagocytophilum} Length = 215

 Score = 75.3 bits (186), Expect = 3e-16
 Identities = 37/161 (22%), Positives = 61/161 (37%), Gaps = 48/161 (29%)

Query: 127 PKYKVAVLAS------KQEHCLVDFLYGWQEGKLPVEITCVISNHDRGPNSHVIRFLERH 180
            + +V VL S      +    L      +   +  V I+CVISN+     +  +   + +
Sbjct: 7   KELRVGVLISGRGSNLEA---LAKA---FSTEESSVVISCVISNN---AEARGLLIAQSY 57

Query: 181 GIPYHYLCAKENEREEELLELVQ--NTDFLVLARYMQPVPLQKEAYLGYKLLESLSSKGS 238
           GIP   +  K  +  E +  +++  + D + LA +M                        
Sbjct: 58  GIPTFVVKRKPLD-IEHISTVLREHDVDLVCLAGFMS----------------------- 93

Query: 239 LTSYFNMILSGKFLRSYGKDVINIHHGLLPSFKGGKPAKQV 279
                  IL  KF+  +   +INIH  LLPSFKG    +Q 
Sbjct: 94  -------ILPEKFVTDWHHKIINIHPSLLPSFKGLNAQEQA 127

>4ds3_A Phosphoribosylglycinamide formyltransferase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 1.85A {Brucella melitensis BV} Length = 209

 Score = 73.7 bits (182), Expect = 7e-16
 Identities = 34/162 (20%), Positives = 53/162 (32%), Gaps = 51/162 (31%)

Query: 123 PDIDPKYKVAVLAS------KQEHCLVDFLYGWQEGKLPVEITCVISNHDRGPNSHVIRF 176
           P    + +V +  S      +    L+      Q    P EI  V S+      +  +  
Sbjct: 2   PGSMKRNRVVIFISGGGSNME---ALIRAA---QAPGFPAEIVAVFSDK---AEAGGLAK 52

Query: 177 LERHGIPYHYLCAKE----NEREEELLELVQ--NTDFLVLARYMQPVPLQKEAYLGYKLL 230
            E  GI       K+       E+ +L  +     D + LA YM+               
Sbjct: 53  AEAAGIATQVFKRKDFASKEAHEDAILAALDVLKPDIICLAGYMR--------------- 97

Query: 231 ESLSSKGSLTSYFNMILSGKFLRSYGKDVINIHHGLLPSFKG 272
                          +LSG+F+  Y   ++NIH  LLP F G
Sbjct: 98  ---------------LLSGRFIAPYEGRILNIHPSLLPLFPG 124

>3p9x_A Phosphoribosylglycinamide formyltransferase; structural genomics, PSI-biology, protein STRU initiative; 1.90A {Bacillus halodurans} Length = 211

 Score = 72.9 bits (180), Expect = 1e-15
 Identities = 35/154 (22%), Positives = 63/154 (40%), Gaps = 49/154 (31%)

Query: 130 KVAVLAS-----KQEHCLVDFLYGWQEGKLPVEITCVISNHDRGPNSHVIRFLERHGIPY 184
           +VA+ AS      +   ++      + G+LP E+  +I++    P + V+  ++ H IP 
Sbjct: 4   RVAIFASGSGTNAEA--IIQSQ---KAGQLPCEVALLITDK---PGAKVVERVKVHEIPV 55

Query: 185 HYLCAKE----NEREEELLELVQ--NTDFLVLARYMQPVPLQKEAYLGYKLLESLSSKGS 238
             L  K        E E+++ ++    DF+VLA YM+                       
Sbjct: 56  CALDPKTYPSKEAYEIEVVQQLKEKQIDFVVLAGYMR----------------------- 92

Query: 239 LTSYFNMILSGKFLRSYGKDVINIHHGLLPSFKG 272
                  ++    L +Y   ++NIH  LLP+F G
Sbjct: 93  -------LVGPTLLGAYEGRIVNIHPSLLPAFPG 119

>3av3_A Phosphoribosylglycinamide formyltransferase; structural genomics, riken structural genomics/proteomics in RSGI, rossmann fold; HET: MSE; 1.70A {Geobacillus kaustophilus} Length = 212

 Score = 73.3 bits (181), Expect = 1e-15
 Identities = 31/157 (19%), Positives = 54/157 (34%), Gaps = 55/157 (35%)

Query: 130 KVAVLASKQ--------EHCLVDFLYGWQEGKLPVEITCVISNHDRGPNSHVIRFLERHG 181
           ++AV AS          +          + G LP  +  ++ +    P + VI    R  
Sbjct: 5   RLAVFASGSGTNFQAIVDAA--------KRGDLPARVALLVCDR---PGAKVIERAAREN 53

Query: 182 IPYHYLCAKE----NEREEELLELVQ--NTDFLVLARYMQPVPLQKEAYLGYKLLESLSS 235
           +P      K+       E E+L  ++    D++ LA YM+                    
Sbjct: 54  VPAFVFSPKDYPSKAAFESEILRELKGRQIDWIALAGYMR-------------------- 93

Query: 236 KGSLTSYFNMILSGKFLRSYGKDVINIHHGLLPSFKG 272
                     ++    L +Y   ++NIH  LLP+F G
Sbjct: 94  ----------LIGPTLLSAYEGKIVNIHPSLLPAFPG 120

>3auf_A Glycinamide ribonucleotide transformylase 1; structural genomics, riken structural genomics/proteomics in RSGI, rossmann fold; 2.07A {Symbiobacterium toebii} Length = 229

 Score = 73.4 bits (181), Expect = 2e-15
 Identities = 33/170 (19%), Positives = 62/170 (36%), Gaps = 49/170 (28%)

Query: 114 NAMRSVVRVPDIDPKYKVAVLASK-----QEHCLVDFLYGWQEGKLPVEITCVISNHDRG 168
           +   S   +       ++ VL S      Q   ++D   G +EG++P  +  VIS+    
Sbjct: 8   HHHSSGENLYFQGHMIRIGVLISGSGTNLQ--AILD---GCREGRIPGRVAVVISDR--- 59

Query: 169 PNSHVIRFLERHGIPYHYLCAKE----NEREEELLELVQ--NTDFLVLARYMQPVPLQKE 222
            +++ +    R G+   ++           +  L E +Q    D + LA YM+       
Sbjct: 60  ADAYGLERARRAGVDALHMDPAAYPSRTAFDAALAERLQAYGVDLVCLAGYMR------- 112

Query: 223 AYLGYKLLESLSSKGSLTSYFNMILSGKFLRSYGKDVINIHHGLLPSFKG 272
                                  ++ G  L ++   ++NIH  LLP+F G
Sbjct: 113 -----------------------LVRGPMLTAFPNRILNIHPSLLPAFPG 139

>1meo_A Phosophoribosylglycinamide formyltransferase; purine biosynthesis; 1.72A {Homo sapiens} SCOP: c.65.1.1 PDB: 1njs_A* 1rbm_A* 1rbq_A* 1rby_A* 1rbz_A* 1rc0_A* 1rc1_A* 1zly_A* 1zlx_A* 1mej_B 1men_A* Length = 209

 Score = 72.5 bits (179), Expect = 2e-15
 Identities = 40/162 (24%), Positives = 62/162 (38%), Gaps = 51/162 (31%)

Query: 130 KVAVLAS------KQEHCLVDFLYGWQEGKLPVEITCVISNHDRGPNSHVIRFLERHGIP 183
           +VAVL S      +    L+D     +E     +I  VISN         +   ER GIP
Sbjct: 2   RVAVLISGTGSNLQ---ALIDS---TREPNSSAQIDIVISNK---AAVAGLDKAERAGIP 52

Query: 184 YHYLCAKE----NEREEELLELVQ--NTDFLVLARYMQPVPLQKEAYLGYKLLESLSSKG 237
              +  K      E +  +  +++  + D + LA +M+                      
Sbjct: 53  TRVINHKLYKNRVEFDSAIDLVLEEFSIDIVCLAGFMR---------------------- 90

Query: 238 SLTSYFNMILSGKFLRSYGKDVINIHHGLLPSFKGGKPAKQV 279
                   ILSG F++ +   ++NIH  LLPSFKG    +Q 
Sbjct: 91  --------ILSGPFVQKWNGKMLNIHPSLLPSFKGSNAHEQA 124

>1jkx_A GART;, phosphoribosylglycinamide formyltransferase; purine biosynthesis, anti-cancer agent; HET: 138; 1.60A {Escherichia coli} SCOP: c.65.1.1 PDB: 1cdd_A 1cde_A* 1c2t_A* 1grc_A 1gar_A* 2gar_A 3gar_A 1c3e_A* Length = 212

 Score = 72.1 bits (178), Expect = 3e-15
 Identities = 33/154 (21%), Positives = 53/154 (34%), Gaps = 49/154 (31%)

Query: 130 KVAVLAS-----KQEHCLVDFLYGWQEGKLPVEITCVISNHDRGPNSHVIRFLERHGIPY 184
            + VL S      Q   ++D     +  K+   +  V SN     ++  +    + GI  
Sbjct: 2   NIVVLISGNGSNLQ--AIIDA---CKTNKIKGTVRAVFSNK---ADAFGLERARQAGIAT 53

Query: 185 HYLCAKE----NEREEELLELVQ--NTDFLVLARYMQPVPLQKEAYLGYKLLESLSSKGS 238
           H L A         + EL+  +     D +VLA +M+                       
Sbjct: 54  HTLIASAFDSREAYDRELIHEIDMYAPDVVVLAGFMR----------------------- 90

Query: 239 LTSYFNMILSGKFLRSYGKDVINIHHGLLPSFKG 272
                  ILS  F+  Y   ++NIH  LLP + G
Sbjct: 91  -------ILSPAFVSHYAGRLLNIHPSLLPKYPG 117

>2ywr_A Phosphoribosylglycinamide formyltransferase; rossmann fold, structural genomics, NPPSFA; 1.77A {Aquifex aeolicus} Length = 216

 Score = 72.2 bits (178), Expect = 3e-15
 Identities = 39/162 (24%), Positives = 66/162 (40%), Gaps = 51/162 (31%)

Query: 130 KVAVLAS------KQEHCLVDFLYGWQEGKLPVEITCVISNHDRGPNSHVIRFLERHGIP 183
           K+ VL S      +    ++D +   + GK+   I  VIS++   P ++ I   ++H + 
Sbjct: 3   KIGVLVSGRGSNLQ---AIIDAI---ESGKVNASIELVISDN---PKAYAIERCKKHNVE 53

Query: 184 YHYLCAKE----NEREEELLELVQ--NTDFLVLARYMQPVPLQKEAYLGYKLLESLSSKG 237
              +  KE     E EE +   ++    + +VLA +M+                      
Sbjct: 54  CKVIQRKEFPSKKEFEERMALELKKKGVELVVLAGFMR---------------------- 91

Query: 238 SLTSYFNMILSGKFLRSYGKDVINIHHGLLPSFKGGKPAKQV 279
                   ILS  FL+ +   VINIH  L+P+F+G    KQ 
Sbjct: 92  --------ILSHNFLKYFPNKVINIHPSLIPAFQGLHAQKQA 125

>3da8_A Probable 5'-phosphoribosylglycinamide formyltransferase PURN; glycinamide ribonucleotide transformylase, structure; 1.30A {Mycobacterium tuberculosis} PDB: 3dcj_A* Length = 215

 Score = 71.8 bits (177), Expect = 4e-15
 Identities = 29/168 (17%), Positives = 52/168 (30%), Gaps = 52/168 (30%)

Query: 116 MRSVVRVPDIDPKYKVAVLASK-----QEHCLVDFLYGWQEGKLPVEITCVISNHDRGPN 170
           ++  +RVP   P  ++ VLAS      +   L+D       G  P  +  V  + +    
Sbjct: 1   VQEPLRVPPSAPA-RLVVLASGTGSLLR--SLLD----AAVGDYPARVVAVGVDRE---- 49

Query: 171 SHVIRFLERHGIPYHYLCAKE----NEREEELLELVQ--NTDFLVLARYMQPVPLQKEAY 224
                      +P   +   +    +  +  +         D +V A +M+         
Sbjct: 50  CRAAEIAAEASVPVFTVRLADHPSRDAWDVAITAATAAHEPDLVVSAGFMR--------- 100

Query: 225 LGYKLLESLSSKGSLTSYFNMILSGKFLRSYGKDVINIHHGLLPSFKG 272
                                IL  +FL  +    +N H  LLP+F G
Sbjct: 101 ---------------------ILGPQFLSRFYGRTLNTHPALLPAFPG 127

>3tqr_A Phosphoribosylglycinamide formyltransferase; purines, pyrimidines, nucleosides, nucleotides; HET: NHE; 1.97A {Coxiella burnetii} Length = 215

 Score = 71.0 bits (175), Expect = 7e-15
 Identities = 32/157 (20%), Positives = 56/157 (35%), Gaps = 50/157 (31%)

Query: 127 PKYKVAVLASK-----QEHCLVDFLYGWQEGKLPVEITCVISNHDRGPNSHVIRFLERHG 181
               + VL S      Q   ++       +  L +EI  VISN     +++ ++  ++  
Sbjct: 4   EPLPIVVLISGNGTNLQA--IIGA----IQKGLAIEIRAVISNR---ADAYGLKRAQQAD 54

Query: 182 IPYHYLCAKE----NEREEELLELVQ--NTDFLVLARYMQPVPLQKEAYLGYKLLESLSS 235
           IP H +  +E     + E  L + +   +   +VLA +M+                    
Sbjct: 55  IPTHIIPHEEFPSRTDFESTLQKTIDHYDPKLIVLAGFMR-------------------- 94

Query: 236 KGSLTSYFNMILSGKFLRSYGKDVINIHHGLLPSFKG 272
                      L   F+  Y   +INIH  LLP + G
Sbjct: 95  ----------KLGKAFVSHYSGRMINIHPSLLPKYTG 121

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 58.3 bits (140), Expect = 1e-09
 Identities = 47/278 (16%), Positives = 95/278 (34%), Gaps = 62/278 (22%)

Query: 32  IESSVSPTLTHGI--HVFHCPDEVGIVAKLSECIASRGGNILAADVFVPEKKNVFYSRSE 89
           ++      L+     H+    D V    +L   + S+   +     FV E   + Y   +
Sbjct: 38  VQDMPKSILSKEEIDHIIMSKDAVSGTLRLFWTLLSKQEEM--VQKFVEEVLRINY---K 92

Query: 90  FIFDPIKWPREQ--MDEDFF--KLSKMFNAMRSVVR--VPDIDPKYKV-AVLASKQEHCL 142
           F+  PIK  + Q  M    +  +  +++N  +   +  V  + P  K+   L   +    
Sbjct: 93  FLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKN 152

Query: 143 VDFLYGWQ-EGK--LPVEITCVISNHDRGPNSHVIRFLERHGIPYHYLCAKENEREEELL 199
           V  + G    GK  + ++   V  ++         +   +      +L  K     E +L
Sbjct: 153 V-LIDGVLGSGKTWVALD---VCLSY---------KVQCKMDFKIFWLNLKNCNSPETVL 199

Query: 200 ELVQN------TDFLVLARYMQPVPLQKEAYLGYKLLESLSSKGSLTSYFNMILSGKFLR 253
           E++Q        ++   + +   + L+  + +  +L   L SK     Y N +L    L 
Sbjct: 200 EMLQKLLYQIDPNWTSRSDHSSNIKLRIHS-IQAELRRLLKSK----PYENCLL---VLL 251

Query: 254 SYGKDVINIHHGLLPSFKGGKPAKQVGCFTFCLGNLIT 291
               +V N       +F        + C       L+T
Sbjct: 252 ----NVQNAKA--WNAFN-------LSCKI-----LLT 271

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 52.9 bits (126), Expect = 6e-08
 Identities = 51/321 (15%), Positives = 95/321 (29%), Gaps = 87/321 (27%)

Query: 10  SLQQVVKFTNRSFKSLKFPGEPIE-SSVSPTLTHGIHVFHCPDEVGIVAKLSECIA---- 64
               ++K+ +   + L     P E  + +P     I          I   + + +A    
Sbjct: 303 VKSLLLKYLDCRPQDL-----PREVLTTNP-RRLSI----------IAESIRDGLATWDN 346

Query: 65  ------SRGGNILAA--DVFVP-EKKNVFYSRSEFIFD-----PIK-----WPR------ 99
                  +   I+ +  +V  P E + +F   S  +F      P       W        
Sbjct: 347 WKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLS--VFPPSAHIPTILLSLIWFDVIKSDV 404

Query: 100 EQMDEDFFKLSKMF-NAMRSVVRVPDIDPKYKVAVLASKQEH-CLVDFLYGWQEGKLPVE 157
             +     K S +      S + +P I  + KV +      H  +VD  Y          
Sbjct: 405 MVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYALHRSIVDH-Y---------N 454

Query: 158 ITCVISNHDRGPNSHVIRFLERHGIPYHYLCAKENEREEELLELVQNTDFL--------- 208
           I     + D  P  ++ ++   H I +H    +  ER      +  +  FL         
Sbjct: 455 IPKTFDSDDLIPP-YLDQYFYSH-IGHHLKNIEHPERMTLFRMVFLDFRFLEQKIRHDST 512

Query: 209 --VLARYMQPVPLQKEAYLGYKLLESLSSKGSLTSYFNMILSGKFLRSYGKDVIN----- 261
               +  +     Q + Y  Y       +        N IL   FL    +++I      
Sbjct: 513 AWNASGSILNTLQQLKFYKPY----ICDNDPKYERLVNAIL--DFLPKIEENLICSKYTD 566

Query: 262 -IHHGLLPSFKG--GKPAKQV 279
            +   L+   +    +  KQV
Sbjct: 567 LLRIALMAEDEAIFEEAHKQV 587

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	306
3o1l_A	302	Formyltetrahydrofolate deformylase; structural gen	100.0
3lou_A	292	Formyltetrahydrofolate deformylase; structural gen	100.0
3n0v_A	286	Formyltetrahydrofolate deformylase; formyl transfe	100.0
3obi_A	288	Formyltetrahydrofolate deformylase; structural gen	100.0
3nrb_A	287	Formyltetrahydrofolate deformylase; N-terminal ACT	100.0
3p9x_A	211	Phosphoribosylglycinamide formyltransferase; struc	99.97
3tqr_A	215	Phosphoribosylglycinamide formyltransferase; purin	99.97
3kcq_A	215	Phosphoribosylglycinamide formyltransferase; struc	99.97
4ds3_A	209	Phosphoribosylglycinamide formyltransferase; struc	99.97
3da8_A	215	Probable 5'-phosphoribosylglycinamide formyltransf	99.97
1meo_A	209	Phosophoribosylglycinamide formyltransferase; puri	99.97
1jkx_A	212	GART;, phosphoribosylglycinamide formyltransferase	99.96
3av3_A	212	Phosphoribosylglycinamide formyltransferase; struc	99.96
3auf_A	229	Glycinamide ribonucleotide transformylase 1; struc	99.96
2ywr_A	216	Phosphoribosylglycinamide formyltransferase; rossm	99.96
1fmt_A	314	Methionyl-tRNA FMet formyltransferase; initiator t	99.91
2bln_A	305	Protein YFBG; transferase, formyltransferase, L-AR	99.91
1z7e_A	660	Protein aRNA; rossmann fold, OB-like fold, hydrola	99.89
3q0i_A	318	Methionyl-tRNA formyltransferase; structural genom	99.89
3rfo_A	317	Methionyl-tRNA formyltransferase; structural genom	99.88
3tqq_A	314	Methionyl-tRNA formyltransferase; protein synthesi	99.88
2bw0_A	329	10-FTHFDH, 10-formyltetrahydrofolate dehydrogenase	99.87
3p96_A	415	Phosphoserine phosphatase SERB; ssgcid, structural	99.79
1zpv_A	91	ACT domain protein; structural genomics, PSI, prot	99.58
2nyi_A	195	Unknown protein; protein structure initiative, PSI	99.57
1u8s_A	192	Glycine cleavage system transcriptional repressor,	99.55
2nyi_A	195	Unknown protein; protein structure initiative, PSI	99.52
1u8s_A	192	Glycine cleavage system transcriptional repressor,	99.46
1zgh_A	260	Methionyl-tRNA formyltransferase; southeast collab	99.29
2ko1_A	88	CTR148A, GTP pyrophosphokinase; homodimer, alpha+b	98.4
1y7p_A	223	Hypothetical protein AF1403; structural genomics,	98.03
3p96_A	415	Phosphoserine phosphatase SERB; ssgcid, structural	97.75
2f1f_A	164	Acetolactate synthase isozyme III small subunit; f	97.63
2f06_A	144	Conserved hypothetical protein; structural genomic	97.51
2re1_A	167	Aspartokinase, alpha and beta subunits; structural	97.39
2pc6_A	165	Probable acetolactate synthase isozyme III (small;	97.3
2fgc_A	193	Acetolactate synthase, small subunit; regulatory s	97.18
2dt9_A	167	Aspartokinase; protein-ligand complex, regulatory	96.95
2jhe_A	190	Transcription regulator TYRR; aromatic hydrocarbon	96.51
2f06_A	144	Conserved hypothetical protein; structural genomic	96.37
1ygy_A	529	PGDH, D-3-phosphoglycerate dehydrogenase; oxidored	96.26
1sc6_A	404	PGDH, D-3-phosphoglycerate dehydrogenase; alloster	96.22
4go7_X	200	Aspartokinase; transferase; 2.00A {Mycobacterium t	95.69
3s1t_A	181	Aspartokinase; ACT domain, threonine binding, regu	95.13
4gmf_A	372	Yersiniabactin biosynthetic protein YBTU; rossmann	94.52
2dtj_A	178	Aspartokinase; protein-ligand complex, regulatory	94.44
2re1_A	167	Aspartokinase, alpha and beta subunits; structural	92.46
3k5p_A	416	D-3-phosphoglycerate dehydrogenase; niaid, ssgcid,	92.19
3mtj_A	444	Homoserine dehydrogenase; rossmann-fold, PSI, MCSG	91.77
2dtj_A	178	Aspartokinase; protein-ligand complex, regulatory	91.51
3ab4_A	421	Aspartokinase; aspartate kinase, concerted inhibit	91.39
2dt9_A	167	Aspartokinase; protein-ligand complex, regulatory	89.9
3rjz_A	237	N-type ATP pyrophosphatase superfamily; structural	89.79
3l76_A	600	Aspartokinase; allostery, ACT domains, kinase tran	86.91
1zhv_A	134	Hypothetical protein ATU0741; NESG, ATR8, structur	85.43
4had_A	350	Probable oxidoreductase protein; structural genomi	84.89
3l76_A	600	Aspartokinase; allostery, ACT domains, kinase tran	83.54
1nvm_B	312	Acetaldehyde dehydrogenase (acylating), 4-hydroxy-	82.66
2i6u_A	307	Otcase, ornithine carbamoyltransferase; X-RAY crys	82.44
3mwb_A	313	Prephenate dehydratase; L-Phe, PSI, MCSG, structur	82.42
3grf_A	328	Ornithine carbamoyltransferase; ornithine transcar	82.22
2qmw_A	267	PDT, prephenate dehydratase; APC85812, prephenate	82.05
2qmx_A	283	Prephenate dehydratase; APC86053, L-Phe inhibition	81.3
4fb5_A	393	Probable oxidoreductase protein; PSI-biology, nysg	80.53
1wy5_A	317	TILS, hypothetical UPF0072 protein AQ_1887; N-type	80.27

>3o1l_A Formyltetrahydrofolate deformylase; structural genomics, joint center for structural genomics, J protein structure initiative; HET: MSE; 2.20A {Pseudomonas syringae PV}

Probab=100.00  E-value=3.8e-56  Score=419.82  Aligned_cols=212  Identities=37%  Similarity=0.581  Sum_probs=191.2

Q ss_pred             cccEEEEEEcCCccchHHHHHHHHHhcCCeEeEeeeeccCCCCeEEEEEEEEeCCCCCCHHHHHHHHHHHHhhhhcccce
Q 021895           40 LTHGIHVFHCPDEVGIVAKLSECIASRGGNILAADVFVPEKKNVFYSRSEFIFDPIKWPREQMDEDFFKLSKMFNAMRSV  119 (306)
Q Consensus        40 ~~k~ILTViGpDRpGIVAaVS~~LAe~G~NIlD~sQ~id~l~G~FfMrmeVdv~~~~~~~eeLreaL~~la~elgl~~~~  119 (306)
                      ++++|||++||||+||||+||++|+++||||+|++|+++..+|+||||++|+.++...+.++|+++|++++++++|.   
T Consensus        20 ~~~~iLtv~c~DrpGIVa~VS~~La~~g~NI~d~~q~~d~~~g~FfMr~~~~~~~~~~~~~~L~~~l~~la~~l~m~---   96 (302)
T 3o1l_A           20 MRTFRLVIACPDRVGIVAKVSNFLASHNGWITEASHHSDNLSGWFFMRHEIRADTLPFDLDGFREAFTPIAEEFSMD---   96 (302)
T ss_dssp             CCEEEEEEEEECCTTHHHHHHHHHHHTTCCEEEEEEEEETTTTEEEEEEEEEGGGSSSCHHHHHHHHHHHHHHHTCE---
T ss_pred             cceEEEEEECCCCCCHHHHHHHHHHHCCCCEEEeeEEecCCCCeEEEEEEEecCCCCCCHHHHHHHHHHHHHHhCCe---
Confidence            56799999999999999999999999999999999999888999999999998765578999999999999999963   


Q ss_pred             eeecCCCCCceEEEEEeCCcchHHHHHHhhhcCCCCeEEEEEeeCCCCCCChhHHHHHHhCCCCEEEeCCC-CCC--hHH
Q 021895          120 VRVPDIDPKYKVAVLASKQEHCLVDFLYGWQEGKLPVEITCVISNHDRGPNSHVIRFLERHGIPYHYLCAK-ENE--REE  196 (306)
Q Consensus       120 ~rl~~~~~~~riavl~S~~g~~L~~ll~~~~~g~l~~~I~~Visn~~~~~~~~~~~~A~~~gIp~~~~~~k-~~~--~e~  196 (306)
                      |++.+.++++||+||+||+||||++||++++.|+++++|++|||||++     +.++|+++|||+++++.+ .++  .|+
T Consensus        97 ~~l~~~~~~~ri~vl~Sg~g~nl~~ll~~~~~g~l~~~I~~Visn~~~-----~~~~A~~~gIp~~~~~~~~~~r~~~~~  171 (302)
T 3o1l_A           97 WRITDSAQKKRVVLMASRESHCLADLLHRWHSDELDCDIACVISNHQD-----LRSMVEWHDIPYYHVPVDPKDKEPAFA  171 (302)
T ss_dssp             EEEEETTSCCEEEEEECSCCHHHHHHHHHHHTTCSCSEEEEEEESSST-----THHHHHTTTCCEEECCCCSSCCHHHHH
T ss_pred             eeecccCCCcEEEEEEeCCchhHHHHHHHHHCCCCCcEEEEEEECcHH-----HHHHHHHcCCCEEEcCCCcCCHHHHHH
Confidence            667888889999999999999999999999999999999999999953     367899999999998743 222  246


Q ss_pred             HHHHHhc--CCcEEEEeccCCCCcCchhhhhhhhhhhhhccCCCccccccccCCHhHHhhcCCCeeEeCCCCCCCCCCCc
Q 021895          197 ELLELVQ--NTDFLVLARYMQPVPLQKEAYLGYKLLESLSSKGSLTSYFNMILSGKFLRSYGKDVINIHHGLLPSFKGGK  274 (306)
Q Consensus       197 e~~~~v~--~~D~vVlA~ym~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~~~l~~~~~~iINiHpsLLP~f~Ga~  274 (306)
                      +++++++  ++|++|||||||                              ||+++|++.|++++|||||||||+|+|++
T Consensus       172 ~~~~~l~~~~~DliVlagym~------------------------------IL~~~~l~~~~~~~INiHpSlLP~frG~~  221 (302)
T 3o1l_A          172 EVSRLVGHHQADVVVLARYMQ------------------------------ILPPQLCREYAHQVINIHHSFLPSFVGAK  221 (302)
T ss_dssp             HHHHHHHHTTCSEEEESSCCS------------------------------CCCTTHHHHTTTCEEEEESSCTTSSCSSC
T ss_pred             HHHHHHHHhCCCEEEHhHhhh------------------------------hcCHHHHhhhhCCeEEeCcccccCCCCcc
Confidence            7888887  899999999999                              99999999999999999999999999999


Q ss_pred             HHHHHHHHHhhcCce
Q 021895          275 PAKQVGCFTFCLGNL  289 (306)
Q Consensus       275 p~~~A~~~~~~l~~~  289 (306)
                      |++||+....+.-|+
T Consensus       222 p~~~Ai~~G~k~tG~  236 (302)
T 3o1l_A          222 PYHQASLRGVKLIGA  236 (302)
T ss_dssp             HHHHHHHHTCSEEEE
T ss_pred             HHHHHHHcCCCeEEE
Confidence            999998776554443

>3lou_A Formyltetrahydrofolate deformylase; structural genomics, JOI for structural genomics, JCSG, protein structure initiative hydrolase; HET: MSE; 1.90A {Burkholderia mallei}

Probab=100.00  E-value=4.5e-56  Score=417.24  Aligned_cols=215  Identities=27%  Similarity=0.483  Sum_probs=188.7

Q ss_pred             CCCCcccEEEEEEcCCccchHHHHHHHHHhcCCeEeEeeeeccCCCCeEEEEEEEEeC--CCCCCHHHHHHHHHHHHhhh
Q 021895           36 VSPTLTHGIHVFHCPDEVGIVAKLSECIASRGGNILAADVFVPEKKNVFYSRSEFIFD--PIKWPREQMDEDFFKLSKMF  113 (306)
Q Consensus        36 ~~p~~~k~ILTViGpDRpGIVAaVS~~LAe~G~NIlD~sQ~id~l~G~FfMrmeVdv~--~~~~~~eeLreaL~~la~el  113 (306)
                      |+..+++++||++||||+||||+||++|+++||||+|++|+.+..+|+||||++|+.+  +...+.++|+++|+++++++
T Consensus         4 ~~~~~~~~vLtv~c~Dr~GIVa~Vs~~La~~g~NI~d~~q~~d~~~g~Ffmr~~~~~~~~~~~~~~~~L~~~f~~la~~~   83 (292)
T 3lou_A            4 VPQRPHQFVLTLSCPSAAGQVAAVVGLLDRHRCYVDELTVFDDDLSARFFVRCVFHATDDADALRVDALRREFEPIAERF   83 (292)
T ss_dssp             ----CCEEEEEEEEESCSCHHHHHHHHHHHTTEEEEEEEEEEETTTTEEEEEEEEEECC----CCHHHHHHHHHHHHHHH
T ss_pred             CcCCCCcEEEEEEcCCCCCHHHHHHHHHHHCCCCEEeeEEEecCCCCceEEEEEEEccCcccCCCHHHHHHHHHHHHHhc
Confidence            4555678999999999999999999999999999999999988889999999999987  43568999999999999999


Q ss_pred             hcccceeeecCCCCCceEEEEEeCCcchHHHHHHhhhcCCCCeEEEEEeeCCCCCCChhHHHHHHhCCCCEEEeCCCCCC
Q 021895          114 NAMRSVVRVPDIDPKYKVAVLASKQEHCLVDFLYGWQEGKLPVEITCVISNHDRGPNSHVIRFLERHGIPYHYLCAKENE  193 (306)
Q Consensus       114 gl~~~~~rl~~~~~~~riavl~S~~g~~L~~ll~~~~~g~l~~~I~~Visn~~~~~~~~~~~~A~~~gIp~~~~~~k~~~  193 (306)
                      +|.   |++.+.++++||+||+||+||||++||++++.|+++++|++|||||++   +  ..+|+++|||+++++.+...
T Consensus        84 ~m~---~~l~~~~~~~ri~vl~Sg~g~~l~~ll~~~~~g~l~~~i~~Visn~~~---~--~~~A~~~gIp~~~~~~~~~~  155 (292)
T 3lou_A           84 RMQ---WAIHDVAARPKVLIMVSKLEHCLADLLFRWKMGELKMDIVGIVSNHPD---F--APLAAQHGLPFRHFPITADT  155 (292)
T ss_dssp             TCE---EEEEETTSCCEEEEEECSCCHHHHHHHHHHHHTSSCCEEEEEEESSST---T--HHHHHHTTCCEEECCCCSSC
T ss_pred             CcE---EEeeccCCCCEEEEEEcCCCcCHHHHHHHHHcCCCCcEEEEEEeCcHH---H--HHHHHHcCCCEEEeCCCcCC
Confidence            973   677888889999999999999999999999999999999999999953   3  46799999999998843333


Q ss_pred             h---HHHHHHHhc--CCcEEEEeccCCCCcCchhhhhhhhhhhhhccCCCccccccccCCHhHHhhcCCCeeEeCCCCCC
Q 021895          194 R---EEELLELVQ--NTDFLVLARYMQPVPLQKEAYLGYKLLESLSSKGSLTSYFNMILSGKFLRSYGKDVINIHHGLLP  268 (306)
Q Consensus       194 ~---e~e~~~~v~--~~D~vVlA~ym~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~~~l~~~~~~iINiHpsLLP  268 (306)
                      +   |++++++++  ++|++|||||||                              ||+++|++.|++++|||||||||
T Consensus       156 r~~~~~~~~~~l~~~~~Dlivla~y~~------------------------------il~~~~l~~~~~~~iNiHpSlLP  205 (292)
T 3lou_A          156 KAQQEAQWLDVFETSGAELVILARYMQ------------------------------VLSPEASARLANRAINIHHSFLP  205 (292)
T ss_dssp             HHHHHHHHHHHHHHHTCSEEEESSCCS------------------------------CCCHHHHHHTTTSEEEEEEECSS
T ss_pred             HHHHHHHHHHHHHHhCCCEEEecCchh------------------------------hCCHHHHhhhcCCeEEeCCCcCc
Confidence            3   467888887  899999999999                              99999999999999999999999


Q ss_pred             CCCCCcHHHHHHHHHhhcCc
Q 021895          269 SFKGGKPAKQVGCFTFCLGN  288 (306)
Q Consensus       269 ~f~Ga~p~~~A~~~~~~l~~  288 (306)
                      +|+|++|++||+......-|
T Consensus       206 ~~rG~~p~~~Ai~~G~~~~G  225 (292)
T 3lou_A          206 GFKGAKPYHQAHARGVKLIG  225 (292)
T ss_dssp             CCCSSCHHHHHHHHTCSEEE
T ss_pred             CCCCccHHHHHHHcCCCeEE
Confidence            99999999999776554433

>3n0v_A Formyltetrahydrofolate deformylase; formyl transferase, ACT domain, structural genomics, joint C structural genomics, JCSG; HET: MSE; 2.25A {Pseudomonas putida}

Probab=100.00  E-value=8.6e-56  Score=414.06  Aligned_cols=211  Identities=27%  Similarity=0.461  Sum_probs=189.7

Q ss_pred             CcccEEEEEEcCCccchHHHHHHHHHhcCCeEeEeeeeccCCCCeEEEEEEEEeCCCCCCHHHHHHHHHHHHhhhhcccc
Q 021895           39 TLTHGIHVFHCPDEVGIVAKLSECIASRGGNILAADVFVPEKKNVFYSRSEFIFDPIKWPREQMDEDFFKLSKMFNAMRS  118 (306)
Q Consensus        39 ~~~k~ILTViGpDRpGIVAaVS~~LAe~G~NIlD~sQ~id~l~G~FfMrmeVdv~~~~~~~eeLreaL~~la~elgl~~~  118 (306)
                      .+++++||++||||+||||+||++|+++||||+|++|+.+..+|+||||++|+.++ ..+.++|+++|+++++++++.  
T Consensus         5 ~~~~~vLtv~c~DrpGIVa~Vs~~La~~g~NI~d~~q~~d~~~g~Ffmr~~~~~~~-~~~~~~L~~~f~~la~~l~m~--   81 (286)
T 3n0v_A            5 APDTWILTADCPSMLGTVDVVTRYLFEQRCYVTEHHSFDDRQSGRFFIRVEFRQPD-DFDEAGFRAGLAERSEAFGMA--   81 (286)
T ss_dssp             --CCEEEEEEEECCTTHHHHHHHHHHHTTCEEEEEEEEEETTTTEEEEEEEEECCS-SCCHHHHHHHHHHHHGGGTCE--
T ss_pred             cCCcEEEEEEeCCCCCHHHHHHHHHHHCCCCeeeeeeeccCCCCeeEEEEEEecCC-CCCHHHHHHHHHHHHHHcCCE--
Confidence            35679999999999999999999999999999999999888899999999999876 678999999999999999973  


Q ss_pred             eeeecCCCCCceEEEEEeCCcchHHHHHHhhhcCCCCeEEEEEeeCCCCCCChhHHHHHHhCCCCEEEeCCCCCCh---H
Q 021895          119 VVRVPDIDPKYKVAVLASKQEHCLVDFLYGWQEGKLPVEITCVISNHDRGPNSHVIRFLERHGIPYHYLCAKENER---E  195 (306)
Q Consensus       119 ~~rl~~~~~~~riavl~S~~g~~L~~ll~~~~~g~l~~~I~~Visn~~~~~~~~~~~~A~~~gIp~~~~~~k~~~~---e  195 (306)
                       |++.+.++++||+||+||+||||++||++++.|+++++|++|||||++     +..+|+++|||+++++.+...+   |
T Consensus        82 -~~l~~~~~~~ri~vl~Sg~g~~l~~ll~~~~~g~l~~~i~~Visn~~~-----~~~~A~~~gIp~~~~~~~~~~r~~~~  155 (286)
T 3n0v_A           82 -FELTAPNHRPKVVIMVSKADHCLNDLLYRQRIGQLGMDVVAVVSNHPD-----LEPLAHWHKIPYYHFALDPKDKPGQE  155 (286)
T ss_dssp             -EEEECTTCCCEEEEEESSCCHHHHHHHHHHHTTSSCCEEEEEEESSST-----THHHHHHTTCCEEECCCBTTBHHHHH
T ss_pred             -EEeecCCCCcEEEEEEeCCCCCHHHHHHHHHCCCCCcEEEEEEeCcHH-----HHHHHHHcCCCEEEeCCCcCCHHHHH
Confidence             678888899999999999999999999999999999999999999954     3567999999999987433333   4


Q ss_pred             HHHHHHhc--CCcEEEEeccCCCCcCchhhhhhhhhhhhhccCCCccccccccCCHhHHhhcCCCeeEeCCCCCCCCCCC
Q 021895          196 EELLELVQ--NTDFLVLARYMQPVPLQKEAYLGYKLLESLSSKGSLTSYFNMILSGKFLRSYGKDVINIHHGLLPSFKGG  273 (306)
Q Consensus       196 ~e~~~~v~--~~D~vVlA~ym~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~~~l~~~~~~iINiHpsLLP~f~Ga  273 (306)
                      ++++++++  ++|++|+|||||                              ||+++|++.|++++|||||||||+|+|+
T Consensus       156 ~~~~~~l~~~~~Dlivla~y~~------------------------------il~~~~l~~~~~~~iNiHpSlLP~~rG~  205 (286)
T 3n0v_A          156 RKVLQVIEETGAELVILARYMQ------------------------------VLSPELCRRLDGWAINIHHSLLPGFKGA  205 (286)
T ss_dssp             HHHHHHHHHHTCSEEEESSCCS------------------------------CCCHHHHHHTTTSEEEEEECSSTTCCCS
T ss_pred             HHHHHHHHhcCCCEEEeccccc------------------------------ccCHHHHhhhcCCeEEeccccccCCCCc
Confidence            67888887  899999999999                              9999999999999999999999999999


Q ss_pred             cHHHHHHHHHhhcCc
Q 021895          274 KPAKQVGCFTFCLGN  288 (306)
Q Consensus       274 ~p~~~A~~~~~~l~~  288 (306)
                      +|++||+......-|
T Consensus       206 ~p~~~Ai~~G~~~~G  220 (286)
T 3n0v_A          206 KPYHQAYNKGVKMVG  220 (286)
T ss_dssp             CHHHHHHHHTCSEEE
T ss_pred             cHHHHHHHcCCCeEE
Confidence            999999776655433

>3obi_A Formyltetrahydrofolate deformylase; structural genomics, joint center for structural genomics, J protein structure initiative; HET: MSE; 1.95A {Rhodopseudomonas palustris}

Probab=100.00  E-value=9.9e-56  Score=413.98  Aligned_cols=212  Identities=32%  Similarity=0.507  Sum_probs=190.6

Q ss_pred             cccEEEEEEcCCccchHHHHHHHHHhcCCeEeEeeeeccCCCCeEEEEEEEEeCCCCCCHHHHHHHHHHHHhhhhcccce
Q 021895           40 LTHGIHVFHCPDEVGIVAKLSECIASRGGNILAADVFVPEKKNVFYSRSEFIFDPIKWPREQMDEDFFKLSKMFNAMRSV  119 (306)
Q Consensus        40 ~~k~ILTViGpDRpGIVAaVS~~LAe~G~NIlD~sQ~id~l~G~FfMrmeVdv~~~~~~~eeLreaL~~la~elgl~~~~  119 (306)
                      +.+++||++||||+||||+||++|+++||||+|++|+.+..+|+||||++|++++...+.++|+++|++++++++|.   
T Consensus         4 ~~~~iLtv~g~DrpGIVa~Vs~~La~~g~NI~d~~q~~d~~~g~Ffmr~~~~~~~~~~~~~~L~~~f~~la~~~~m~---   80 (288)
T 3obi_A            4 HHQYVLTLSCPDRAGIVSAVSTFLFENGQNILDAQQYNDTESGHFFMRVVFNAAAKVIPLASLRTGFGVIAAKFTMG---   80 (288)
T ss_dssp             CCEEEEEEEEECCTTHHHHHHHHHHHTTEEEEEEEEEEETTTTEEEEEEEEEESSCCCCHHHHHHHHHHHHHHTTCE---
T ss_pred             CCeEEEEEECCCCCCHHHHHHHHHHHCCCcEEeeeeeecCCCCceEEEEEEEcCCCCCCHHHHHHHHHHHHHHcCCE---
Confidence            34699999999999999999999999999999999998888999999999999876678999999999999999973   


Q ss_pred             eeecCCCCCceEEEEEeCCcchHHHHHHhhhcCCCCeEEEEEeeCCCCCCChhHHHHHHhCCCCEEEeCCCCCCh---HH
Q 021895          120 VRVPDIDPKYKVAVLASKQEHCLVDFLYGWQEGKLPVEITCVISNHDRGPNSHVIRFLERHGIPYHYLCAKENER---EE  196 (306)
Q Consensus       120 ~rl~~~~~~~riavl~S~~g~~L~~ll~~~~~g~l~~~I~~Visn~~~~~~~~~~~~A~~~gIp~~~~~~k~~~~---e~  196 (306)
                      |++.+.++++||+||+||+||||++||++++.|+++++|++|||||+.    .+.++|+++|||+++++.+...+   |+
T Consensus        81 ~~l~~~~~~~ri~vl~Sg~g~nl~~ll~~~~~g~l~~~i~~Visn~p~----~~~~~A~~~gIp~~~~~~~~~~r~~~~~  156 (288)
T 3obi_A           81 WHMRDRETRRKVMLLVSQSDHCLADILYRWRVGDLHMIPTAIVSNHPR----ETFSGFDFGDIPFYHFPVNKDTRRQQEA  156 (288)
T ss_dssp             EEEEETTSCEEEEEEECSCCHHHHHHHHHHHTTSSCEEEEEEEESSCG----GGSCCTTTTTCCEEECCCCTTTHHHHHH
T ss_pred             EEeeccCCCcEEEEEEcCCCCCHHHHHHHHHCCCCCeEEEEEEcCCCh----hHHHHHHHcCCCEEEeCCCcccHHHHHH
Confidence            677888889999999999999999999999999999999999999931    24678999999999988543333   46


Q ss_pred             HHHHHhc--CCcEEEEeccCCCCcCchhhhhhhhhhhhhccCCCccccccccCCHhHHhhcCCCeeEeCCCCCCCCCCCc
Q 021895          197 ELLELVQ--NTDFLVLARYMQPVPLQKEAYLGYKLLESLSSKGSLTSYFNMILSGKFLRSYGKDVINIHHGLLPSFKGGK  274 (306)
Q Consensus       197 e~~~~v~--~~D~vVlA~ym~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~~~l~~~~~~iINiHpsLLP~f~Ga~  274 (306)
                      +++++++  ++|++|||||||                              ||+++|++.|++++|||||||||+|+|++
T Consensus       157 ~~~~~l~~~~~Dlivlagy~~------------------------------il~~~~l~~~~~~~iNiHpSlLP~~rG~~  206 (288)
T 3obi_A          157 AITALIAQTHTDLVVLARYMQ------------------------------ILSDEMSARLAGRCINIHHSFLPGFKGAK  206 (288)
T ss_dssp             HHHHHHHHHTCCEEEESSCCS------------------------------CCCHHHHHHTTTSEEEEEEECSSCCCSSC
T ss_pred             HHHHHHHhcCCCEEEhhhhhh------------------------------hCCHHHHhhhcCCeEEeCcccccCCCCch
Confidence            7888887  899999999999                              99999999999999999999999999999


Q ss_pred             HHHHHHHHHhhcCc
Q 021895          275 PAKQVGCFTFCLGN  288 (306)
Q Consensus       275 p~~~A~~~~~~l~~  288 (306)
                      |++||+....+.-|
T Consensus       207 p~~~A~~~G~~~~G  220 (288)
T 3obi_A          207 PYHQAFDRGVKLIG  220 (288)
T ss_dssp             HHHHHHHHTCSEEE
T ss_pred             HHHHHHHcCCCEEE
Confidence            99999776655443

>3nrb_A Formyltetrahydrofolate deformylase; N-terminal ACT domain, structural genomics, joint center for structural genomics, JCSG; HET: MSE FLC; 2.05A {Pseudomonas putida}

Probab=100.00  E-value=1.3e-55  Score=413.07  Aligned_cols=210  Identities=32%  Similarity=0.498  Sum_probs=187.4

Q ss_pred             cccEEEEEEcCCccchHHHHHHHHHhcCCeEeEeeeeccCCCCeEEEEEEEEeCCCCCCHHHHHHHHHHHHhhhhcccce
Q 021895           40 LTHGIHVFHCPDEVGIVAKLSECIASRGGNILAADVFVPEKKNVFYSRSEFIFDPIKWPREQMDEDFFKLSKMFNAMRSV  119 (306)
Q Consensus        40 ~~k~ILTViGpDRpGIVAaVS~~LAe~G~NIlD~sQ~id~l~G~FfMrmeVdv~~~~~~~eeLreaL~~la~elgl~~~~  119 (306)
                      .++++||++||||+||||+||++|+++||||+|++|+.+..+|+||||++|+.++  .+.++|+++|++++++++|.   
T Consensus         5 ~~~~vLtv~c~Dr~GIVa~Vs~~La~~g~NI~d~~q~~d~~~g~Ffmr~~~~~~~--~~~~~L~~~f~~la~~~~m~---   79 (287)
T 3nrb_A            5 NNQYVLSLACQDAPGIVSEVSTFLFNNGANIVEAEQFNDEDSSKFFMRVSVEIPV--AGVNDFNSAFGKVVEKYNAE---   79 (287)
T ss_dssp             TTEEEEEEEEECCTTHHHHHHHHHHHTTCEEEEEEEEEETTTTEEEEEEEEECCC-----CHHHHHHHHHHGGGTCE---
T ss_pred             CCeEEEEEECCCCCCHHHHHHHHHHHCCCCEEeeeeeecCCCCeEEEEEEEEcCC--CCHHHHHHHHHHHHHHcCCe---
Confidence            5679999999999999999999999999999999999888899999999999865  35679999999999999973   


Q ss_pred             eeecCCCCCceEEEEEeCCcchHHHHHHhhhcCCCCeEEEEEeeCCCCCCChhHHHHHHhCCCCEEEeCCCCCCh---HH
Q 021895          120 VRVPDIDPKYKVAVLASKQEHCLVDFLYGWQEGKLPVEITCVISNHDRGPNSHVIRFLERHGIPYHYLCAKENER---EE  196 (306)
Q Consensus       120 ~rl~~~~~~~riavl~S~~g~~L~~ll~~~~~g~l~~~I~~Visn~~~~~~~~~~~~A~~~gIp~~~~~~k~~~~---e~  196 (306)
                      |++.+.++++||+||+||+||||++|++++++|+++++|++|||||++   + +.++|+++|||+++++.+...+   |+
T Consensus        80 ~~l~~~~~~~ri~vl~Sg~g~nl~~ll~~~~~g~l~~~i~~Visn~~~---a-~~~~A~~~gIp~~~~~~~~~~r~~~~~  155 (287)
T 3nrb_A           80 WWFRPRTDRKKVVIMVSKFDHCLGDLLYRHRLGELDMEVVGIISNHPR---E-ALSVSLVGDIPFHYLPVTPATKAAQES  155 (287)
T ss_dssp             EEEEETTCCCEEEEEECSCCHHHHHHHHHHHHTSSCCEEEEEEESSCG---G-GCCCCCCTTSCEEECCCCGGGHHHHHH
T ss_pred             eEeeccCCCcEEEEEEeCCCcCHHHHHHHHHCCCCCeEEEEEEeCChH---H-HHHHHHHcCCCEEEEeccCcchhhHHH
Confidence            677888889999999999999999999999999999999999999943   3 6788999999999988433222   46


Q ss_pred             HHHHHhc--CCcEEEEeccCCCCcCchhhhhhhhhhhhhccCCCccccccccCCHhHHhhcCCCeeEeCCCCCCCCCCCc
Q 021895          197 ELLELVQ--NTDFLVLARYMQPVPLQKEAYLGYKLLESLSSKGSLTSYFNMILSGKFLRSYGKDVINIHHGLLPSFKGGK  274 (306)
Q Consensus       197 e~~~~v~--~~D~vVlA~ym~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~~~l~~~~~~iINiHpsLLP~f~Ga~  274 (306)
                      +++++++  ++|++|||||||                              ||+++|++.|++++|||||||||+|+|++
T Consensus       156 ~~~~~l~~~~~Dlivlagym~------------------------------il~~~~l~~~~~~~iNiHpSlLP~~rG~~  205 (287)
T 3nrb_A          156 QIKNIVTQSQADLIVLARYMQ------------------------------ILSDDLSAFLSGRCINIHHSFLPGFKGAK  205 (287)
T ss_dssp             HHHHHHHHHTCSEEEESSCCS------------------------------CCCHHHHHHHTTSEEEEESSCTTTTCSSC
T ss_pred             HHHHHHHHhCCCEEEhhhhhh------------------------------hcCHHHHhhccCCeEEECcccccCCCCch
Confidence            7888887  899999999999                              99999999999999999999999999999


Q ss_pred             HHHHHHHHHhhcCc
Q 021895          275 PAKQVGCFTFCLGN  288 (306)
Q Consensus       275 p~~~A~~~~~~l~~  288 (306)
                      |++||+....+.-|
T Consensus       206 p~~~Ai~~G~k~tG  219 (287)
T 3nrb_A          206 PYHQAHTRGVKLIG  219 (287)
T ss_dssp             HHHHHHHHTCSEEE
T ss_pred             HHHHHHHcCCCeEE
Confidence            99999777655444

>3p9x_A Phosphoribosylglycinamide formyltransferase; structural genomics, PSI-biology, protein STRU initiative; 1.90A {Bacillus halodurans}

Probab=99.97  E-value=1.2e-31  Score=241.88  Aligned_cols=124  Identities=29%  Similarity=0.478  Sum_probs=111.7

Q ss_pred             CceEEEEEeCCcchHHHHHHhhhcCCCCeEEEEEeeCCCCCCChhHHHHHHhCCCCEEEeCCC-CCCh---HHHHHHHhc
Q 021895          128 KYKVAVLASKQEHCLVDFLYGWQEGKLPVEITCVISNHDRGPNSHVIRFLERHGIPYHYLCAK-ENER---EEELLELVQ  203 (306)
Q Consensus       128 ~~riavl~S~~g~~L~~ll~~~~~g~l~~~I~~Visn~~~~~~~~~~~~A~~~gIp~~~~~~k-~~~~---e~e~~~~v~  203 (306)
                      ++|||||+||+|+||++|+++++.|+++++|++||||+   ++++++++|+++|||+++++.+ .+.+   |+++++.++
T Consensus         2 m~riavl~Sg~Gsnl~ali~~~~~~~l~~eI~~Visn~---~~a~v~~~A~~~gIp~~~~~~~~~~~r~~~d~~~~~~l~   78 (211)
T 3p9x_A            2 MKRVAIFASGSGTNAEAIIQSQKAGQLPCEVALLITDK---PGAKVVERVKVHEIPVCALDPKTYPSKEAYEIEVVQQLK   78 (211)
T ss_dssp             -CEEEEECCTTCHHHHHHHHHHHTTCCSSEEEEEEESC---SSSHHHHHHHTTTCCEEECCGGGSSSHHHHHHHHHHHHH
T ss_pred             CCEEEEEEeCCchHHHHHHHHHHcCCCCcEEEEEEECC---CCcHHHHHHHHcCCCEEEeChhhcCchhhhHHHHHHHHH
Confidence            46999999999999999999999999999999999998   5789999999999999998743 3333   467888886


Q ss_pred             --CCcEEEEeccCCCCcCchhhhhhhhhhhhhccCCCccccccccCCHhHHhhcCCCeeEeCCCCCCCCCCCcHHHHHHH
Q 021895          204 --NTDFLVLARYMQPVPLQKEAYLGYKLLESLSSKGSLTSYFNMILSGKFLRSYGKDVINIHHGLLPSFKGGKPAKQVGC  281 (306)
Q Consensus       204 --~~D~vVlA~ym~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~~~l~~~~~~iINiHpsLLP~f~Ga~p~~~A~~  281 (306)
                        ++|++|+||||+                              ||+++|++.|+.++|||||||||+|||++|++||+.
T Consensus        79 ~~~~Dliv~agy~~------------------------------Il~~~~l~~~~~~~iNiHpSLLP~yrG~~pi~~Ai~  128 (211)
T 3p9x_A           79 EKQIDFVVLAGYMR------------------------------LVGPTLLGAYEGRIVNIHPSLLPAFPGLHAIEQAIR  128 (211)
T ss_dssp             HTTCCEEEESSCCS------------------------------CCCHHHHHHHTTSEEEEESSCTTSSCSSCHHHHHHH
T ss_pred             hcCCCEEEEeCchh------------------------------hcCHHHHhhccCCeEEECCccCCCCCCccHHHHHHH
Confidence              899999999999                              999999999999999999999999999999999965


Q ss_pred             HHh
Q 021895          282 FTF  284 (306)
Q Consensus       282 ~~~  284 (306)
                      ..-
T Consensus       129 ~G~  131 (211)
T 3p9x_A          129 ANV  131 (211)
T ss_dssp             TTC
T ss_pred             cCC
Confidence            543

>3tqr_A Phosphoribosylglycinamide formyltransferase; purines, pyrimidines, nucleosides, nucleotides; HET: NHE; 1.97A {Coxiella burnetii} SCOP: c.65.1.0

Probab=99.97  E-value=2.5e-31  Score=240.07  Aligned_cols=127  Identities=27%  Similarity=0.389  Sum_probs=112.4

Q ss_pred             CCCceEEEEEeCCcchHHHHHHhhhcCCCCeEEEEEeeCCCCCCChhHHHHHHhCCCCEEEeCCC-CCCh---HHHHHHH
Q 021895          126 DPKYKVAVLASKQEHCLVDFLYGWQEGKLPVEITCVISNHDRGPNSHVIRFLERHGIPYHYLCAK-ENER---EEELLEL  201 (306)
Q Consensus       126 ~~~~riavl~S~~g~~L~~ll~~~~~g~l~~~I~~Visn~~~~~~~~~~~~A~~~gIp~~~~~~k-~~~~---e~e~~~~  201 (306)
                      ++++|||||+||+|+||++|++++++| ++++|++||||+   ++++++++|+++|||+++++.+ ...+   |+++.+.
T Consensus         3 ~~~~riavl~SG~Gsnl~all~~~~~~-~~~eI~~Vis~~---~~a~~~~~A~~~gIp~~~~~~~~~~~r~~~d~~~~~~   78 (215)
T 3tqr_A            3 REPLPIVVLISGNGTNLQAIIGAIQKG-LAIEIRAVISNR---ADAYGLKRAQQADIPTHIIPHEEFPSRTDFESTLQKT   78 (215)
T ss_dssp             -CCEEEEEEESSCCHHHHHHHHHHHTT-CSEEEEEEEESC---TTCHHHHHHHHTTCCEEECCGGGSSSHHHHHHHHHHH
T ss_pred             CCCcEEEEEEeCCcHHHHHHHHHHHcC-CCCEEEEEEeCC---cchHHHHHHHHcCCCEEEeCccccCchhHhHHHHHHH
Confidence            357899999999999999999999999 999999999998   4578899999999999998743 2333   4678888


Q ss_pred             hc--CCcEEEEeccCCCCcCchhhhhhhhhhhhhccCCCccccccccCCHhHHhhcCCCeeEeCCCCCCCCCCCcHHHHH
Q 021895          202 VQ--NTDFLVLARYMQPVPLQKEAYLGYKLLESLSSKGSLTSYFNMILSGKFLRSYGKDVINIHHGLLPSFKGGKPAKQV  279 (306)
Q Consensus       202 v~--~~D~vVlA~ym~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~~~l~~~~~~iINiHpsLLP~f~Ga~p~~~A  279 (306)
                      ++  ++|++|+||||+                              ||+++|++.|+.++|||||||||+|||++|++||
T Consensus        79 l~~~~~Dliv~agy~~------------------------------il~~~~l~~~~~~~iNiHpSLLP~yrG~~pi~~A  128 (215)
T 3tqr_A           79 IDHYDPKLIVLAGFMR------------------------------KLGKAFVSHYSGRMINIHPSLLPKYTGLNTHERA  128 (215)
T ss_dssp             HHTTCCSEEEESSCCS------------------------------CCCHHHHHHTTTSEEEEESSSTTTTCSSCHHHHH
T ss_pred             HHhcCCCEEEEccchh------------------------------hCCHHHHhhccCCeEEeCcccCCCCCChhHHHHH
Confidence            87  899999999999                              9999999999999999999999999999999999


Q ss_pred             HHHHhhc
Q 021895          280 GCFTFCL  286 (306)
Q Consensus       280 ~~~~~~l  286 (306)
                      +...-..
T Consensus       129 i~~G~~~  135 (215)
T 3tqr_A          129 LAAGETE  135 (215)
T ss_dssp             HHTTCSE
T ss_pred             HHcCCCe
Confidence            6554433

>3kcq_A Phosphoribosylglycinamide formyltransferase; structural genomics, niaid, seattle structural center for infectious disease, ssgcid; 2.20A {Anaplasma phagocytophilum} SCOP: c.65.1.0

Probab=99.97  E-value=2.7e-31  Score=239.94  Aligned_cols=127  Identities=29%  Similarity=0.433  Sum_probs=112.0

Q ss_pred             CCCceEEEEEeCCcchHHHHHHhhhcCCCCeEEEEEeeCCCCCCChhHHHHHHhCCCCEEEeCCCCCChHHHHHHHhc--
Q 021895          126 DPKYKVAVLASKQEHCLVDFLYGWQEGKLPVEITCVISNHDRGPNSHVIRFLERHGIPYHYLCAKENEREEELLELVQ--  203 (306)
Q Consensus       126 ~~~~riavl~S~~g~~L~~ll~~~~~g~l~~~I~~Visn~~~~~~~~~~~~A~~~gIp~~~~~~k~~~~e~e~~~~v~--  203 (306)
                      ++++||+||+||+|+||+++++++++|+++++|++||||+   ++++++++|+++|||+++++.+.. .++++.+.++  
T Consensus         6 ~~~~ri~vl~SG~gsnl~all~~~~~~~~~~~I~~Vis~~---~~a~~l~~A~~~gIp~~~~~~~~~-~~~~~~~~L~~~   81 (215)
T 3kcq_A            6 KKELRVGVLISGRGSNLEALAKAFSTEESSVVISCVISNN---AEARGLLIAQSYGIPTFVVKRKPL-DIEHISTVLREH   81 (215)
T ss_dssp             -CCEEEEEEESSCCHHHHHHHHHTCCC-CSEEEEEEEESC---TTCTHHHHHHHTTCCEEECCBTTB-CHHHHHHHHHHT
T ss_pred             CCCCEEEEEEECCcHHHHHHHHHHHcCCCCcEEEEEEeCC---cchHHHHHHHHcCCCEEEeCcccC-ChHHHHHHHHHh
Confidence            4678999999999999999999999999999999999998   456789999999999999874322 2467778886  


Q ss_pred             CCcEEEEeccCCCCcCchhhhhhhhhhhhhccCCCccccccccCCHhHHhhcCCCeeEeCCCCCCCCCCCcHHHHHHHHH
Q 021895          204 NTDFLVLARYMQPVPLQKEAYLGYKLLESLSSKGSLTSYFNMILSGKFLRSYGKDVINIHHGLLPSFKGGKPAKQVGCFT  283 (306)
Q Consensus       204 ~~D~vVlA~ym~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~~~l~~~~~~iINiHpsLLP~f~Ga~p~~~A~~~~  283 (306)
                      ++|++|+||||+                              ||+++|++.|+.++|||||||||+|||++|++||+...
T Consensus        82 ~~Dlivlagy~~------------------------------IL~~~~l~~~~~~~iNiHpSLLP~yrG~~pi~~Ai~~G  131 (215)
T 3kcq_A           82 DVDLVCLAGFMS------------------------------ILPEKFVTDWHHKIINIHPSLLPSFKGLNAQEQAYKAG  131 (215)
T ss_dssp             TCSEEEESSCCS------------------------------CCCHHHHHHTTTSEEEEESSCTTTTCSSCHHHHHHHHT
T ss_pred             CCCEEEEeCCce------------------------------EeCHHHHhhccCCeEEECcccccCCCCccHHHHHHHcC
Confidence            899999999999                              99999999999999999999999999999999997665


Q ss_pred             hhc
Q 021895          284 FCL  286 (306)
Q Consensus       284 ~~l  286 (306)
                      ...
T Consensus       132 ~~~  134 (215)
T 3kcq_A          132 VKI  134 (215)
T ss_dssp             CSE
T ss_pred             CCe
Confidence            443

>4ds3_A Phosphoribosylglycinamide formyltransferase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 1.85A {Brucella melitensis BV}

Probab=99.97  E-value=3.2e-31  Score=238.49  Aligned_cols=125  Identities=26%  Similarity=0.425  Sum_probs=112.1

Q ss_pred             CceEEEEEeCCcchHHHHHHhhhcCCCCeEEEEEeeCCCCCCChhHHHHHHhCCCCEEEeCCCC-CCh---HHHHHHHhc
Q 021895          128 KYKVAVLASKQEHCLVDFLYGWQEGKLPVEITCVISNHDRGPNSHVIRFLERHGIPYHYLCAKE-NER---EEELLELVQ  203 (306)
Q Consensus       128 ~~riavl~S~~g~~L~~ll~~~~~g~l~~~I~~Visn~~~~~~~~~~~~A~~~gIp~~~~~~k~-~~~---e~e~~~~v~  203 (306)
                      ++||+||+||+|+||+++++++++|+++++|++||||+   ++++++++|+++|||+++++.+. ..+   |+++.+.++
T Consensus         7 ~~ri~vl~SG~gsnl~all~~~~~~~l~~~I~~Visn~---~~a~~l~~A~~~gIp~~~~~~~~~~~r~~~d~~~~~~l~   83 (209)
T 4ds3_A            7 RNRVVIFISGGGSNMEALIRAAQAPGFPAEIVAVFSDK---AEAGGLAKAEAAGIATQVFKRKDFASKEAHEDAILAALD   83 (209)
T ss_dssp             CEEEEEEESSCCHHHHHHHHHHTSTTCSEEEEEEEESC---TTCTHHHHHHHTTCCEEECCGGGSSSHHHHHHHHHHHHH
T ss_pred             CccEEEEEECCcHHHHHHHHHHHcCCCCcEEEEEEECC---cccHHHHHHHHcCCCEEEeCccccCCHHHHHHHHHHHHH
Confidence            67999999999999999999999999999999999998   45678999999999999987432 333   467888887


Q ss_pred             --CCcEEEEeccCCCCcCchhhhhhhhhhhhhccCCCccccccccCCHhHHhhcCCCeeEeCCCCCCCCCCCcHHHHHHH
Q 021895          204 --NTDFLVLARYMQPVPLQKEAYLGYKLLESLSSKGSLTSYFNMILSGKFLRSYGKDVINIHHGLLPSFKGGKPAKQVGC  281 (306)
Q Consensus       204 --~~D~vVlA~ym~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~~~l~~~~~~iINiHpsLLP~f~Ga~p~~~A~~  281 (306)
                        ++|++|+||||+                              ||+++|++.|+.++|||||||||+|||++|++||+.
T Consensus        84 ~~~~Dliv~agy~~------------------------------il~~~~l~~~~~~~iNiHpSLLP~yrG~~pi~~Ai~  133 (209)
T 4ds3_A           84 VLKPDIICLAGYMR------------------------------LLSGRFIAPYEGRILNIHPSLLPLFPGLHTHQRALD  133 (209)
T ss_dssp             HHCCSEEEESSCCS------------------------------CCCHHHHGGGTTCEEEEESSCTTSSCSSCHHHHHHH
T ss_pred             hcCCCEEEEecccc------------------------------CcCHHHHhhccCCeEEECCccccCCCChhHHHHHHH
Confidence              899999999999                              999999999999999999999999999999999965


Q ss_pred             HHhh
Q 021895          282 FTFC  285 (306)
Q Consensus       282 ~~~~  285 (306)
                      ..-.
T Consensus       134 ~G~~  137 (209)
T 4ds3_A          134 AGMK  137 (209)
T ss_dssp             TTCS
T ss_pred             cCCC
Confidence            5443

>3da8_A Probable 5'-phosphoribosylglycinamide formyltransferase PURN; glycinamide ribonucleotide transformylase, structure; 1.30A {Mycobacterium tuberculosis} PDB: 3dcj_A*

Probab=99.97  E-value=1.3e-30  Score=235.46  Aligned_cols=128  Identities=20%  Similarity=0.302  Sum_probs=111.9

Q ss_pred             CCCCCceEEEEEeCCcchHHHHHHhhhcCCCCeEEEEEeeCCCCCCChhHHHHHHhCCCCEEEeCCC-CCCh---HHHHH
Q 021895          124 DIDPKYKVAVLASKQEHCLVDFLYGWQEGKLPVEITCVISNHDRGPNSHVIRFLERHGIPYHYLCAK-ENER---EEELL  199 (306)
Q Consensus       124 ~~~~~~riavl~S~~g~~L~~ll~~~~~g~l~~~I~~Visn~~~~~~~~~~~~A~~~gIp~~~~~~k-~~~~---e~e~~  199 (306)
                      ..+.++||+||+||+|+||++|++++.. +++++|++||||+|    ++++++|+++|||+++++.+ ...+   |+++.
T Consensus         8 ~~~~~~ri~vl~SG~gsnl~all~~~~~-~~~~eI~~Vis~~~----a~~~~~A~~~gIp~~~~~~~~~~~r~~~d~~~~   82 (215)
T 3da8_A            8 PPSAPARLVVLASGTGSLLRSLLDAAVG-DYPARVVAVGVDRE----CRAAEIAAEASVPVFTVRLADHPSRDAWDVAIT   82 (215)
T ss_dssp             CCCSSEEEEEEESSCCHHHHHHHHHSST-TCSEEEEEEEESSC----CHHHHHHHHTTCCEEECCGGGSSSHHHHHHHHH
T ss_pred             CCCCCcEEEEEEeCChHHHHHHHHHHhc-cCCCeEEEEEeCCc----hHHHHHHHHcCCCEEEeCcccccchhhhhHHHH
Confidence            4467889999999999999999999865 68899999999984    57899999999999998743 2233   46788


Q ss_pred             HHhc--CCcEEEEeccCCCCcCchhhhhhhhhhhhhccCCCccccccccCCHhHHhhcCCCeeEeCCCCCCCCCCCcHHH
Q 021895          200 ELVQ--NTDFLVLARYMQPVPLQKEAYLGYKLLESLSSKGSLTSYFNMILSGKFLRSYGKDVINIHHGLLPSFKGGKPAK  277 (306)
Q Consensus       200 ~~v~--~~D~vVlA~ym~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~~~l~~~~~~iINiHpsLLP~f~Ga~p~~  277 (306)
                      +.++  ++|++|+||||+                              ||+++|++.|+.++|||||||||+|||++|++
T Consensus        83 ~~l~~~~~Dlivlagy~~------------------------------iL~~~~l~~~~~~~iNiHpSLLP~yrG~~pi~  132 (215)
T 3da8_A           83 AATAAHEPDLVVSAGFMR------------------------------ILGPQFLSRFYGRTLNTHPALLPAFPGTHGVA  132 (215)
T ss_dssp             HHHHTTCCSEEEEEECCS------------------------------CCCHHHHHHHTTTEEEEESSCTTSSCSTTHHH
T ss_pred             HHHHhhCCCEEEEcCchh------------------------------hCCHHHHhhccCCeEEeCcccccCCCCchHHH
Confidence            8886  899999999999                              99999999999999999999999999999999


Q ss_pred             HHHHHHhhc
Q 021895          278 QVGCFTFCL  286 (306)
Q Consensus       278 ~A~~~~~~l  286 (306)
                      ||+...-..
T Consensus       133 ~Ai~~G~~~  141 (215)
T 3da8_A          133 DALAYGVKV  141 (215)
T ss_dssp             HHHHHTCSE
T ss_pred             HHHHcCCCe
Confidence            996655433

>1meo_A Phosophoribosylglycinamide formyltransferase; purine biosynthesis; 1.72A {Homo sapiens} SCOP: c.65.1.1 PDB: 1njs_A* 1rbm_A* 1rbq_A* 1rby_A* 1rbz_A* 1rc0_A* 1rc1_A* 1zly_A* 1zlx_A* 1mej_B 1men_A*

Probab=99.97  E-value=6.2e-30  Score=229.47  Aligned_cols=124  Identities=31%  Similarity=0.433  Sum_probs=110.1

Q ss_pred             ceEEEEEeCCcchHHHHHHhhhcCCCCeEEEEEeeCCCCCCChhHHHHHHhCCCCEEEeCCC-CCCh---HHHHHHHhc-
Q 021895          129 YKVAVLASKQEHCLVDFLYGWQEGKLPVEITCVISNHDRGPNSHVIRFLERHGIPYHYLCAK-ENER---EEELLELVQ-  203 (306)
Q Consensus       129 ~riavl~S~~g~~L~~ll~~~~~g~l~~~I~~Visn~~~~~~~~~~~~A~~~gIp~~~~~~k-~~~~---e~e~~~~v~-  203 (306)
                      +|||||+||+|+||++|+++++.|+++++|++||||+|   ++.++++|+++|||++++..+ ...+   ++++.+.++ 
T Consensus         1 ~riaVl~SG~Gs~L~aLi~~~~~~~~~~~I~~Vvs~~~---~~~~~~~A~~~gIp~~~~~~~~~~~r~~~~~~~~~~l~~   77 (209)
T 1meo_A            1 ARVAVLISGTGSNLQALIDSTREPNSSAQIDIVISNKA---AVAGLDKAERAGIPTRVINHKLYKNRVEFDSAIDLVLEE   77 (209)
T ss_dssp             CEEEEEESSSCTTHHHHHHHHHSTTCSCEEEEEEESST---TCHHHHHHHHTTCCEEECCGGGSSSHHHHHHHHHHHHHH
T ss_pred             CeEEEEEECCchHHHHHHHHHhcCCCCcEEEEEEeCCC---ChHHHHHHHHcCCCEEEECccccCchhhhhHHHHHHHHh
Confidence            48999999999999999999999999999999999995   457899999999999987742 3333   357778886 


Q ss_pred             -CCcEEEEeccCCCCcCchhhhhhhhhhhhhccCCCccccccccCCHhHHhhcCCCeeEeCCCCCCCCCCCcHHHHHHHH
Q 021895          204 -NTDFLVLARYMQPVPLQKEAYLGYKLLESLSSKGSLTSYFNMILSGKFLRSYGKDVINIHHGLLPSFKGGKPAKQVGCF  282 (306)
Q Consensus       204 -~~D~vVlA~ym~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~~~l~~~~~~iINiHpsLLP~f~Ga~p~~~A~~~  282 (306)
                       ++|++|+||||+                              ||+++|++.|+.++||+||||||+|||++|++||+..
T Consensus        78 ~~~Dliv~a~y~~------------------------------il~~~~l~~~~~~~iNiHpSLLP~yrG~~pi~~Ai~~  127 (209)
T 1meo_A           78 FSIDIVCLAGFMR------------------------------ILSGPFVQKWNGKMLNIHPSLLPSFKGSNAHEQALET  127 (209)
T ss_dssp             TTCCEEEEESCCS------------------------------CCCHHHHHHTTTSEEEEESSSTTSSCSSCHHHHHHHH
T ss_pred             cCCCEEEEcchhh------------------------------hCCHHHHhhhcCCEEEEccCcCcCCCCccHHHHHHHc
Confidence             899999999999                              9999999999999999999999999999999999655


Q ss_pred             Hhh
Q 021895          283 TFC  285 (306)
Q Consensus       283 ~~~  285 (306)
                      .-.
T Consensus       128 G~~  130 (209)
T 1meo_A          128 GVT  130 (209)
T ss_dssp             TCS
T ss_pred             CCC
Confidence            443

>1jkx_A GART;, phosphoribosylglycinamide formyltransferase; purine biosynthesis, anti-cancer agent; HET: 138; 1.60A {Escherichia coli} SCOP: c.65.1.1 PDB: 1cdd_A 1cde_A* 1c2t_A* 1grc_A 1gar_A* 2gar_A 3gar_A 1c3e_A*

Probab=99.96  E-value=6.4e-30  Score=229.59  Aligned_cols=123  Identities=28%  Similarity=0.394  Sum_probs=110.3

Q ss_pred             ceEEEEEeCCcchHHHHHHhhhcCCCCeEEEEEeeCCCCCCChhHHHHHHhCCCCEEEeCC-CCCCh---HHHHHHHhc-
Q 021895          129 YKVAVLASKQEHCLVDFLYGWQEGKLPVEITCVISNHDRGPNSHVIRFLERHGIPYHYLCA-KENER---EEELLELVQ-  203 (306)
Q Consensus       129 ~riavl~S~~g~~L~~ll~~~~~g~l~~~I~~Visn~~~~~~~~~~~~A~~~gIp~~~~~~-k~~~~---e~e~~~~v~-  203 (306)
                      +||+||+||+|+||++|+++++.|+++++|++||||++   ++.++++|+++|||+++++. +.+.+   ++++.+.++ 
T Consensus         1 ~ri~vl~Sg~gsnl~ali~~~~~~~~~~~i~~Vis~~~---~~~~~~~A~~~gIp~~~~~~~~~~~r~~~~~~~~~~l~~   77 (212)
T 1jkx_A            1 MNIVVLISGNGSNLQAIIDACKTNKIKGTVRAVFSNKA---DAFGLERARQAGIATHTLIASAFDSREAYDRELIHEIDM   77 (212)
T ss_dssp             CEEEEEESSCCHHHHHHHHHHHTTSSSSEEEEEEESCT---TCHHHHHHHHTTCEEEECCGGGCSSHHHHHHHHHHHHGG
T ss_pred             CEEEEEEECCcHHHHHHHHHHHcCCCCceEEEEEeCCC---chHHHHHHHHcCCcEEEeCcccccchhhccHHHHHHHHh
Confidence            48999999999999999999999999999999999984   56899999999999999873 22333   467888887 


Q ss_pred             -CCcEEEEeccCCCCcCchhhhhhhhhhhhhccCCCccccccccCCHhHHhhcCCCeeEeCCCCCCCCCCCcHHHHHHHH
Q 021895          204 -NTDFLVLARYMQPVPLQKEAYLGYKLLESLSSKGSLTSYFNMILSGKFLRSYGKDVINIHHGLLPSFKGGKPAKQVGCF  282 (306)
Q Consensus       204 -~~D~vVlA~ym~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~~~l~~~~~~iINiHpsLLP~f~Ga~p~~~A~~~  282 (306)
                       ++|++|+||||+                              ||+++|++.|+.++||+||||||+|||++|++||+..
T Consensus        78 ~~~Dliv~agy~~------------------------------il~~~~l~~~~~~~iNiHpSlLP~yrG~~pi~~ai~~  127 (212)
T 1jkx_A           78 YAPDVVVLAGFMR------------------------------ILSPAFVSHYAGRLLNIHPSLLPKYPGLHTHRQALEN  127 (212)
T ss_dssp             GCCSEEEESSCCS------------------------------CCCHHHHHHTTTSEEEEESSCTTSCCSSCHHHHHHHT
T ss_pred             cCCCEEEEeChhh------------------------------hCCHHHHhhccCCEEEEccCcccCCCCccHHHHHHHc
Confidence             899999999999                              9999999999999999999999999999999999654


Q ss_pred             Hh
Q 021895          283 TF  284 (306)
Q Consensus       283 ~~  284 (306)
                      .-
T Consensus       128 G~  129 (212)
T 1jkx_A          128 GD  129 (212)
T ss_dssp             TC
T ss_pred             CC
Confidence            43

>3av3_A Phosphoribosylglycinamide formyltransferase; structural genomics, riken structural genomics/proteomics in RSGI, rossmann fold; HET: MSE; 1.70A {Geobacillus kaustophilus}

Probab=99.96  E-value=2.4e-29  Score=225.38  Aligned_cols=127  Identities=25%  Similarity=0.442  Sum_probs=112.2

Q ss_pred             CceEEEEEeCCcchHHHHHHhhhcCCCCeEEEEEeeCCCCCCChhHHHHHHhCCCCEEEeCCC-CCCh---HHHHHHHhc
Q 021895          128 KYKVAVLASKQEHCLVDFLYGWQEGKLPVEITCVISNHDRGPNSHVIRFLERHGIPYHYLCAK-ENER---EEELLELVQ  203 (306)
Q Consensus       128 ~~riavl~S~~g~~L~~ll~~~~~g~l~~~I~~Visn~~~~~~~~~~~~A~~~gIp~~~~~~k-~~~~---e~e~~~~v~  203 (306)
                      ++||+||+||+++|++++|+++.++.++++|++||||+   ++++++++|+++|||+++++.+ ...+   |+++.+.++
T Consensus         3 m~ki~vl~sG~g~~~~~~l~~l~~~~l~~~I~~Vit~~---~~~~v~~~A~~~gIp~~~~~~~~~~~~~~~~~~~~~~l~   79 (212)
T 3av3_A            3 MKRLAVFASGSGTNFQAIVDAAKRGDLPARVALLVCDR---PGAKVIERAARENVPAFVFSPKDYPSKAAFESEILRELK   79 (212)
T ss_dssp             CEEEEEECCSSCHHHHHHHHHHHTTCCCEEEEEEEESS---TTCHHHHHHHHTTCCEEECCGGGSSSHHHHHHHHHHHHH
T ss_pred             CcEEEEEEECCcHHHHHHHHHHHhCCCCCeEEEEEeCC---CCcHHHHHHHHcCCCEEEeCcccccchhhhHHHHHHHHH
Confidence            57999999999999999999999998899999999998   4568999999999999987743 2333   457788886


Q ss_pred             --CCcEEEEeccCCCCcCchhhhhhhhhhhhhccCCCccccccccCCHhHHhhcCCCeeEeCCCCCCCCCCCcHHHHHHH
Q 021895          204 --NTDFLVLARYMQPVPLQKEAYLGYKLLESLSSKGSLTSYFNMILSGKFLRSYGKDVINIHHGLLPSFKGGKPAKQVGC  281 (306)
Q Consensus       204 --~~D~vVlA~ym~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~~~l~~~~~~iINiHpsLLP~f~Ga~p~~~A~~  281 (306)
                        ++|++|+||||+                              ||+++|++.|+.++|||||||||+|||++|++||+.
T Consensus        80 ~~~~Dliv~a~y~~------------------------------il~~~~l~~~~~~~iNiHpSLLP~yrG~~pi~~Ai~  129 (212)
T 3av3_A           80 GRQIDWIALAGYMR------------------------------LIGPTLLSAYEGKIVNIHPSLLPAFPGKDAIGQAYR  129 (212)
T ss_dssp             HTTCCEEEESSCCS------------------------------CCCHHHHHHTTTCEEEEESSCTTSSCSTTHHHHHHH
T ss_pred             hcCCCEEEEchhhh------------------------------hCCHHHHhhhcCCEEEEecCcCCCCCCcCHHHHHHH
Confidence              899999999999                              999999999999999999999999999999999966


Q ss_pred             HHhhcC
Q 021895          282 FTFCLG  287 (306)
Q Consensus       282 ~~~~l~  287 (306)
                      ..-..-
T Consensus       130 ~G~~~t  135 (212)
T 3av3_A          130 AGVSET  135 (212)
T ss_dssp             HTCSEE
T ss_pred             cCCCeE
Confidence            554433

>3auf_A Glycinamide ribonucleotide transformylase 1; structural genomics, riken structural genomics/proteomics in RSGI, rossmann fold; 2.07A {Symbiobacterium toebii}

Probab=99.96  E-value=3.9e-29  Score=227.21  Aligned_cols=132  Identities=26%  Similarity=0.393  Sum_probs=115.6

Q ss_pred             ecCCCCCceEEEEEeCCcchHHHHHHhhhcCCCCeEEEEEeeCCCCCCChhHHHHHHhCCCCEEEeCCC-CCCh---HHH
Q 021895          122 VPDIDPKYKVAVLASKQEHCLVDFLYGWQEGKLPVEITCVISNHDRGPNSHVIRFLERHGIPYHYLCAK-ENER---EEE  197 (306)
Q Consensus       122 l~~~~~~~riavl~S~~g~~L~~ll~~~~~g~l~~~I~~Visn~~~~~~~~~~~~A~~~gIp~~~~~~k-~~~~---e~e  197 (306)
                      +.+.++++||+||+||+++|++++|+++.++.++++|++||||+   ++++++++|+++|||+++++.+ .+.+   |++
T Consensus        16 ~~~~~~~~rI~~l~SG~g~~~~~~l~~l~~~~~~~~I~~Vvt~~---~~~~~~~~A~~~gIp~~~~~~~~~~~r~~~~~~   92 (229)
T 3auf_A           16 LYFQGHMIRIGVLISGSGTNLQAILDGCREGRIPGRVAVVISDR---ADAYGLERARRAGVDALHMDPAAYPSRTAFDAA   92 (229)
T ss_dssp             SSCBTTCEEEEEEESSCCHHHHHHHHHHHTTSSSEEEEEEEESS---TTCHHHHHHHHTTCEEEECCGGGSSSHHHHHHH
T ss_pred             ccccCCCcEEEEEEeCCcHHHHHHHHHHHhCCCCCeEEEEEcCC---CchHHHHHHHHcCCCEEEECcccccchhhccHH
Confidence            45566788999999999999999999999998889999999998   4568999999999999987743 2333   467


Q ss_pred             HHHHhc--CCcEEEEeccCCCCcCchhhhhhhhhhhhhccCCCccccccccCCHhHHhhcCCCeeEeCCCCCCCCCCCcH
Q 021895          198 LLELVQ--NTDFLVLARYMQPVPLQKEAYLGYKLLESLSSKGSLTSYFNMILSGKFLRSYGKDVINIHHGLLPSFKGGKP  275 (306)
Q Consensus       198 ~~~~v~--~~D~vVlA~ym~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~~~l~~~~~~iINiHpsLLP~f~Ga~p  275 (306)
                      +.+.++  ++|++|+||||+                              ||+++|++.|+.++|||||||||+|||++|
T Consensus        93 ~~~~l~~~~~Dliv~agy~~------------------------------IL~~~~l~~~~~~~iNiHpSLLP~yrG~~p  142 (229)
T 3auf_A           93 LAERLQAYGVDLVCLAGYMR------------------------------LVRGPMLTAFPNRILNIHPSLLPAFPGLEA  142 (229)
T ss_dssp             HHHHHHHTTCSEEEESSCCS------------------------------CCCHHHHHHSTTCEEEEESSCTTSSCSSCH
T ss_pred             HHHHHHhcCCCEEEEcChhH------------------------------hCCHHHHhhccCCEEEEccCcCcCCCCcCH
Confidence            888886  899999999999                              999999999999999999999999999999


Q ss_pred             HHHHHHHHhhc
Q 021895          276 AKQVGCFTFCL  286 (306)
Q Consensus       276 ~~~A~~~~~~l  286 (306)
                      ++||+...-..
T Consensus       143 i~~Ai~~G~~~  153 (229)
T 3auf_A          143 QRQALEHGVKV  153 (229)
T ss_dssp             HHHHHHHTCSE
T ss_pred             HHHHHHcCCCe
Confidence            99996655443

>2ywr_A Phosphoribosylglycinamide formyltransferase; rossmann fold, structural genomics, NPPSFA; 1.77A {Aquifex aeolicus}

Probab=99.96  E-value=8.7e-29  Score=222.14  Aligned_cols=124  Identities=30%  Similarity=0.447  Sum_probs=110.2

Q ss_pred             ceEEEEEeCCcchHHHHHHhhhcCCCCeEEEEEeeCCCCCCChhHHHHHHhCCCCEEEeCCC-CCCh---HHHHHHHhc-
Q 021895          129 YKVAVLASKQEHCLVDFLYGWQEGKLPVEITCVISNHDRGPNSHVIRFLERHGIPYHYLCAK-ENER---EEELLELVQ-  203 (306)
Q Consensus       129 ~riavl~S~~g~~L~~ll~~~~~g~l~~~I~~Visn~~~~~~~~~~~~A~~~gIp~~~~~~k-~~~~---e~e~~~~v~-  203 (306)
                      +||+||+||+|+|++++|+++.++.++++|++||||++   ++.++++|+++|||+++++.+ .+.+   ++++.+.++ 
T Consensus         2 ~rI~vl~SG~g~~~~~~l~~l~~~~~~~~i~~Vvs~~~---~~~~~~~A~~~gIp~~~~~~~~~~~r~~~~~~~~~~l~~   78 (216)
T 2ywr_A            2 LKIGVLVSGRGSNLQAIIDAIESGKVNASIELVISDNP---KAYAIERCKKHNVECKVIQRKEFPSKKEFEERMALELKK   78 (216)
T ss_dssp             EEEEEEECSCCHHHHHHHHHHHTTSSCEEEEEEEESCT---TCHHHHHHHHHTCCEEECCGGGSSSHHHHHHHHHHHHHH
T ss_pred             CEEEEEEeCCcHHHHHHHHHHHhCCCCCeEEEEEeCCC---ChHHHHHHHHcCCCEEEeCcccccchhhhhHHHHHHHHh
Confidence            69999999999999999999999888899999999984   468999999999999987743 2333   467788886 


Q ss_pred             -CCcEEEEeccCCCCcCchhhhhhhhhhhhhccCCCccccccccCCHhHHhhcCCCeeEeCCCCCCCCCCCcHHHHHHHH
Q 021895          204 -NTDFLVLARYMQPVPLQKEAYLGYKLLESLSSKGSLTSYFNMILSGKFLRSYGKDVINIHHGLLPSFKGGKPAKQVGCF  282 (306)
Q Consensus       204 -~~D~vVlA~ym~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~~~l~~~~~~iINiHpsLLP~f~Ga~p~~~A~~~  282 (306)
                       ++|++|+||||+                              ||+++|++.|+.++|||||||||+|||++|++||+..
T Consensus        79 ~~~Dliv~a~y~~------------------------------il~~~~l~~~~~~~iNiHpSLLP~yrG~~pi~~ai~~  128 (216)
T 2ywr_A           79 KGVELVVLAGFMR------------------------------ILSHNFLKYFPNKVINIHPSLIPAFQGLHAQKQAVEF  128 (216)
T ss_dssp             TTCCEEEESSCCS------------------------------CCCHHHHTTSTTCEEEEESSCTTTTCSTTHHHHHHHH
T ss_pred             cCCCEEEEeCchh------------------------------hCCHHHHhhccCCeEEEcCCcCcCCCCccHHHHHHHc
Confidence             899999999999                              9999999999999999999999999999999999665


Q ss_pred             Hhh
Q 021895          283 TFC  285 (306)
Q Consensus       283 ~~~  285 (306)
                      .-.
T Consensus       129 G~~  131 (216)
T 2ywr_A          129 GVK  131 (216)
T ss_dssp             TCS
T ss_pred             CCC
Confidence            543

>1fmt_A Methionyl-tRNA FMet formyltransferase; initiator tRNA, translation initiation; 2.00A {Escherichia coli} SCOP: b.46.1.1 c.65.1.1 PDB: 2fmt_A* 3r8x_A

Probab=99.91  E-value=7.4e-25  Score=206.69  Aligned_cols=118  Identities=25%  Similarity=0.351  Sum_probs=100.8

Q ss_pred             CCceEEEEEeCC--cchHHHHHHhhhcCCCCeEEEEEeeCCCCCC-------ChhHHHHHHhCCCCEEEeCCCCCChHHH
Q 021895          127 PKYKVAVLASKQ--EHCLVDFLYGWQEGKLPVEITCVISNHDRGP-------NSHVIRFLERHGIPYHYLCAKENEREEE  197 (306)
Q Consensus       127 ~~~riavl~S~~--g~~L~~ll~~~~~g~l~~~I~~Visn~~~~~-------~~~~~~~A~~~gIp~~~~~~k~~~~e~e  197 (306)
                      +++||+||+|++  .+||++|++.   |   ++|++|||++|++.       .++++++|+++|||++.... .  ++++
T Consensus         2 ~~mrIvf~Gt~~fa~~~L~~L~~~---~---~~i~~Vvt~pd~p~grg~~~~~~~v~~~A~~~gIpv~~~~~-~--~~~~   72 (314)
T 1fmt_A            2 ESLRIIFAGTPDFAARHLDALLSS---G---HNVVGVFTQPDRPAGRGKKLMPSPVKVLAEEKGLPVFQPVS-L--RPQE   72 (314)
T ss_dssp             CCCEEEEEECSHHHHHHHHHHHHT---T---CEEEEEECCCCBC------CBCCHHHHHHHHTTCCEECCSC-S--CSHH
T ss_pred             CCCEEEEEecCHHHHHHHHHHHHC---C---CcEEEEEeCCCCccccccccCcCHHHHHHHHcCCcEEecCC-C--CCHH
Confidence            468999999998  6999999974   3   79999999987632       37899999999999976431 1  2456


Q ss_pred             HHHHhc--CCcEEEEeccCCCCcCchhhhhhhhhhhhhccCCCccccccccCCHhHHhhcCCCeeEeCCCCCCCCCCCcH
Q 021895          198 LLELVQ--NTDFLVLARYMQPVPLQKEAYLGYKLLESLSSKGSLTSYFNMILSGKFLRSYGKDVINIHHGLLPSFKGGKP  275 (306)
Q Consensus       198 ~~~~v~--~~D~vVlA~ym~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~~~l~~~~~~iINiHpsLLP~f~Ga~p  275 (306)
                      +.+.++  ++|++|+|+||+                              ||++++++.|+.++||+||||||+|||++|
T Consensus        73 ~~~~l~~~~~Dliv~~~y~~------------------------------ilp~~il~~~~~g~iNiHpSLLP~yRG~~p  122 (314)
T 1fmt_A           73 NQQLVAELQADVMVVVAYGL------------------------------ILPKAVLEMPRLGCINVHGSLLPRWRGAAP  122 (314)
T ss_dssp             HHHHHHHTTCSEEEEESCCS------------------------------CCCHHHHHSSTTCEEEEESSSTTTTBSSCH
T ss_pred             HHHHHHhcCCCEEEEeeccc------------------------------cCCHHHHhhccCCEEEEcCCcCcCCCCcCH
Confidence            667775  899999999999                              999999999999999999999999999999


Q ss_pred             HHHHHHHH
Q 021895          276 AKQVGCFT  283 (306)
Q Consensus       276 ~~~A~~~~  283 (306)
                      ++||+...
T Consensus       123 i~~Ai~~G  130 (314)
T 1fmt_A          123 IQRSLWAG  130 (314)
T ss_dssp             HHHHHHHT
T ss_pred             HHHHHHcC
Confidence            99996544

>2bln_A Protein YFBG; transferase, formyltransferase, L-ARA4N biosynthesis, methyltransferase; HET: FON U5P; 1.2A {Escherichia coli} SCOP: b.46.1.1 c.65.1.1 PDB: 1yrw_A

Probab=99.91  E-value=9.7e-25  Score=204.96  Aligned_cols=116  Identities=21%  Similarity=0.276  Sum_probs=98.8

Q ss_pred             ceEEEEEeCC--cchHHHHHHhhhcCCCCeEEEEEeeCCCCCC----ChhHHHHHHhCCCCEEEeCCCCCChHHHHHHHh
Q 021895          129 YKVAVLASKQ--EHCLVDFLYGWQEGKLPVEITCVISNHDRGP----NSHVIRFLERHGIPYHYLCAKENEREEELLELV  202 (306)
Q Consensus       129 ~riavl~S~~--g~~L~~ll~~~~~g~l~~~I~~Visn~~~~~----~~~~~~~A~~~gIp~~~~~~k~~~~e~e~~~~v  202 (306)
                      +||+||+|++  .+||++|+++      +++|++||||+|++.    .++++++|+++|||+++....   +++++.+.+
T Consensus         1 mrivf~gt~~fa~~~L~~L~~~------~~~i~~Vvt~~d~~~g~~~~~~v~~~A~~~gIpv~~~~~~---~~~~~~~~l   71 (305)
T 2bln_A            1 MKTVVFAYHDMGCLGIEALLAA------GYEISAIFTHTDNPGEKAFYGSVARLAAERGIPVYAPDNV---NHPLWVERI   71 (305)
T ss_dssp             CEEEEEECHHHHHHHHHHHHHT------TCEEEEEECCCC------CCCCHHHHHHHHTCCEECCSCC---CSHHHHHHH
T ss_pred             CEEEEEEcCHHHHHHHHHHHHC------CCcEEEEEcCCCCCCCCcCccHHHHHHHHcCCCEECCCcC---CcHHHHHHH
Confidence            5999999998  6999999975      479999999997631    267999999999999986632   234566666


Q ss_pred             c--CCcEEEEeccCCCCcCchhhhhhhhhhhhhccCCCccccccccCCHhHHhhcCCCeeEeCCCCCCCCCCCcHHHHHH
Q 021895          203 Q--NTDFLVLARYMQPVPLQKEAYLGYKLLESLSSKGSLTSYFNMILSGKFLRSYGKDVINIHHGLLPSFKGGKPAKQVG  280 (306)
Q Consensus       203 ~--~~D~vVlA~ym~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~~~l~~~~~~iINiHpsLLP~f~Ga~p~~~A~  280 (306)
                      +  ++|++|+|+||+                              ||++++++.|+.++||+||||||+|||++|++||+
T Consensus        72 ~~~~~Dliv~~~y~~------------------------------ilp~~il~~~~~g~iNiHpSLLP~yRG~~pi~~ai  121 (305)
T 2bln_A           72 AQLSPDVIFSFYYRH------------------------------LIYDEILQLAPAGAFNLHGSLLPKYRGRAPLNWVL  121 (305)
T ss_dssp             HHTCCSEEEEESCCS------------------------------CCCHHHHTTCTTCEEEEESSCTTTTEESCHHHHHH
T ss_pred             HhcCCCEEEEecccc------------------------------ccCHHHHhcCcCCEEEecCCcCcCCCCccHHHHHH
Confidence            5  999999999999                              99999999999999999999999999999999995


Q ss_pred             HHH
Q 021895          281 CFT  283 (306)
Q Consensus       281 ~~~  283 (306)
                      ...
T Consensus       122 ~~G  124 (305)
T 2bln_A          122 VNG  124 (305)
T ss_dssp             HTT
T ss_pred             HcC
Confidence            543

>1z7e_A Protein aRNA; rossmann fold, OB-like fold, hydrolase; HET: ATP UGA; 3.00A {Escherichia coli} SCOP: b.46.1.1 c.2.1.2 c.65.1.1

Probab=99.89  E-value=1.8e-23  Score=209.56  Aligned_cols=118  Identities=20%  Similarity=0.259  Sum_probs=100.3

Q ss_pred             ceEEEEEeCC--cchHHHHHHhhhcCCCCeEEEEEeeCCCCCC----ChhHHHHHHhCCCCEEEeCCCCCChHHHHHHHh
Q 021895          129 YKVAVLASKQ--EHCLVDFLYGWQEGKLPVEITCVISNHDRGP----NSHVIRFLERHGIPYHYLCAKENEREEELLELV  202 (306)
Q Consensus       129 ~riavl~S~~--g~~L~~ll~~~~~g~l~~~I~~Visn~~~~~----~~~~~~~A~~~gIp~~~~~~k~~~~e~e~~~~v  202 (306)
                      +||+||+|++  ++||++|+++      +++|++||||+|+..    .++++++|+++|||++++...   +++++++.+
T Consensus         1 ~ri~~~~s~~~~~~~l~~l~~~------~~~i~~v~t~~~~~~~~~~~~~~~~~a~~~~ip~~~~~~~---~~~~~~~~l   71 (660)
T 1z7e_A            1 MKTVVFAYHDMGCLGIEALLAA------GYEISAIFTHTDNPGEKAFYGSVARLAAERGIPVYAPDNV---NHPLWVERI   71 (660)
T ss_dssp             CEEEEEECHHHHHHHHHHHHHT------TCEEEEEECCCC--------CCHHHHHHHHTCCEECCSCT---TSHHHHHHH
T ss_pred             CEEEEEEeCHHHHHHHHHHHhC------CCCEEEEEeCCCCCccCcCccHHHHHHHHcCCCEeccCCC---CcHHHHHHH
Confidence            5999999998  7999999986      489999999997631    257999999999999886633   234566666


Q ss_pred             c--CCcEEEEeccCCCCcCchhhhhhhhhhhhhccCCCccccccccCCHhHHhhcCCCeeEeCCCCCCCCCCCcHHHHHH
Q 021895          203 Q--NTDFLVLARYMQPVPLQKEAYLGYKLLESLSSKGSLTSYFNMILSGKFLRSYGKDVINIHHGLLPSFKGGKPAKQVG  280 (306)
Q Consensus       203 ~--~~D~vVlA~ym~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~~~l~~~~~~iINiHpsLLP~f~Ga~p~~~A~  280 (306)
                      +  ++|++|+|+||+                              ||+++|++.|+.++|||||||||+|||++|++||+
T Consensus        72 ~~~~~d~iv~~~~~~------------------------------il~~~~l~~~~~~~iNiH~slLP~~rG~~p~~~ai  121 (660)
T 1z7e_A           72 AQLSPDVIFSFYYRH------------------------------LIYDEILQLAPAGAFNLHGSLLPKYRGRAPLNWVL  121 (660)
T ss_dssp             HHHCCSEEEEESCCS------------------------------CCCHHHHTTCTTCEEEEESSSTTTTCSSCHHHHHH
T ss_pred             HhcCCCEEEEcCccc------------------------------ccCHHHHhcCCCCeEEecCCcCCCCCCccHHHHHH
Confidence            5  999999999999                              99999999999999999999999999999999996


Q ss_pred             HHHhh
Q 021895          281 CFTFC  285 (306)
Q Consensus       281 ~~~~~  285 (306)
                      ...-.
T Consensus       122 ~~g~~  126 (660)
T 1z7e_A          122 VNGET  126 (660)
T ss_dssp             HTTCS
T ss_pred             HcCCC
Confidence            55443

>3q0i_A Methionyl-tRNA formyltransferase; structural genomics, center for structural genomics of infec diseases, csgid; 1.89A {Vibrio cholerae}

Probab=99.89  E-value=3.3e-23  Score=196.06  Aligned_cols=119  Identities=20%  Similarity=0.281  Sum_probs=99.2

Q ss_pred             CCceEEEEEeCCc--chHHHHHHhhhcCCCCeEEEEEeeCCCCCC-------ChhHHHHHHhCCCCEEEeCCCCCChHHH
Q 021895          127 PKYKVAVLASKQE--HCLVDFLYGWQEGKLPVEITCVISNHDRGP-------NSHVIRFLERHGIPYHYLCAKENEREEE  197 (306)
Q Consensus       127 ~~~riavl~S~~g--~~L~~ll~~~~~g~l~~~I~~Visn~~~~~-------~~~~~~~A~~~gIp~~~~~~k~~~~e~e  197 (306)
                      +++||+|++|++.  +||++|+++      .++|++|||++|++.       .+++.++|+++|||++... +  -++++
T Consensus         6 ~~mrivf~Gt~~fa~~~L~~L~~~------~~~v~~Vvt~pd~p~grg~~~~~~~v~~~A~~~gIpv~~~~-~--~~~~~   76 (318)
T 3q0i_A            6 QSLRIVFAGTPDFAARHLAALLSS------EHEIIAVYTQPERPAGRGKKLTASPVKTLALEHNVPVYQPE-N--FKSDE   76 (318)
T ss_dssp             -CCEEEEECCSHHHHHHHHHHHTS------SSEEEEEECCCC---------CCCHHHHHHHHTTCCEECCS-C--SCSHH
T ss_pred             cCCEEEEEecCHHHHHHHHHHHHC------CCcEEEEEcCCCCcccccccCCCCHHHHHHHHcCCCEEccC-c--CCCHH
Confidence            3689999999974  899999864      379999999988632       4689999999999997643 1  12346


Q ss_pred             HHHHhc--CCcEEEEeccCCCCcCchhhhhhhhhhhhhccCCCccccccccCCHhHHhhcCCCeeEeCCCCCCCCCCCcH
Q 021895          198 LLELVQ--NTDFLVLARYMQPVPLQKEAYLGYKLLESLSSKGSLTSYFNMILSGKFLRSYGKDVINIHHGLLPSFKGGKP  275 (306)
Q Consensus       198 ~~~~v~--~~D~vVlA~ym~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~~~l~~~~~~iINiHpsLLP~f~Ga~p  275 (306)
                      +.+.++  ++|++|+|+||+                              ||++++++.|+.++||+||||||+|||++|
T Consensus        77 ~~~~l~~~~~Dliv~~~y~~------------------------------ilp~~~l~~~~~g~iNiHpSlLP~yRG~~p  126 (318)
T 3q0i_A           77 SKQQLAALNADLMVVVAYGL------------------------------LLPKVVLDTPKLGCINVHGSILPRWRGAAP  126 (318)
T ss_dssp             HHHHHHTTCCSEEEESSCCS------------------------------CCCHHHHTSSTTCEEEEESSSTTTTBSSCH
T ss_pred             HHHHHHhcCCCEEEEeCccc------------------------------cCCHHHHhhCcCCEEEeCCccCcCCCCcCH
Confidence            777776  899999999999                              999999999999999999999999999999


Q ss_pred             HHHHHHHHh
Q 021895          276 AKQVGCFTF  284 (306)
Q Consensus       276 ~~~A~~~~~  284 (306)
                      ++||+...-
T Consensus       127 i~~Ai~~G~  135 (318)
T 3q0i_A          127 IQRSIWAGD  135 (318)
T ss_dssp             HHHHHHHTC
T ss_pred             HHHHHHcCC
Confidence            999965433

>3tqq_A Methionyl-tRNA formyltransferase; protein synthesis; 2.00A {Coxiella burnetii}

Probab=99.88  E-value=2.1e-22  Score=190.04  Aligned_cols=117  Identities=24%  Similarity=0.329  Sum_probs=98.2

Q ss_pred             CceEEEEEeCCc--chHHHHHHhhhcCCCCeEEEEEeeCCCCCC-------ChhHHHHHHhCCCCEEEeCCCCCChHHHH
Q 021895          128 KYKVAVLASKQE--HCLVDFLYGWQEGKLPVEITCVISNHDRGP-------NSHVIRFLERHGIPYHYLCAKENEREEEL  198 (306)
Q Consensus       128 ~~riavl~S~~g--~~L~~ll~~~~~g~l~~~I~~Visn~~~~~-------~~~~~~~A~~~gIp~~~~~~k~~~~e~e~  198 (306)
                      ++||+|++|.+.  .||++|+++      .++|++|+|++|++.       .+++.++|+++|||++....   -+++++
T Consensus         2 ~mrivf~Gtp~fa~~~L~~L~~~------~~~v~~Vvt~pd~~~grg~~l~~~~v~~~A~~~gIpv~~~~~---~~~~~~   72 (314)
T 3tqq_A            2 SLKIVFAGTPQFAVPTLRALIDS------SHRVLAVYTQPDRPSGRGQKIMESPVKEIARQNEIPIIQPFS---LRDEVE   72 (314)
T ss_dssp             CCEEEEEECSGGGHHHHHHHHHS------SSEEEEEECCCC----------CCHHHHHHHHTTCCEECCSC---SSSHHH
T ss_pred             CcEEEEECCCHHHHHHHHHHHHC------CCeEEEEEeCCCCccccCCccCCCHHHHHHHHcCCCEECccc---CCCHHH
Confidence            579999999986  689998864      379999999988742       47899999999999876432   123466


Q ss_pred             HHHhc--CCcEEEEeccCCCCcCchhhhhhhhhhhhhccCCCccccccccCCHhHHhhcCCCeeEeCCCCCCCCCCCcHH
Q 021895          199 LELVQ--NTDFLVLARYMQPVPLQKEAYLGYKLLESLSSKGSLTSYFNMILSGKFLRSYGKDVINIHHGLLPSFKGGKPA  276 (306)
Q Consensus       199 ~~~v~--~~D~vVlA~ym~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~~~l~~~~~~iINiHpsLLP~f~Ga~p~  276 (306)
                      .+.++  ++|++|+++||+                              ||++++++.|+.++||+||||||+|||++|+
T Consensus        73 ~~~l~~~~~Dliv~~~~~~------------------------------ilp~~il~~~~~g~iNiHpSlLP~yRG~~pi  122 (314)
T 3tqq_A           73 QEKLIAMNADVMVVVAYGL------------------------------ILPKKALNAFRLGCVNVHASLLPRWRGAAPI  122 (314)
T ss_dssp             HHHHHTTCCSEEEEESCCS------------------------------CCCHHHHTSSTTCEEEEESSCTTTTBSSCHH
T ss_pred             HHHHHhcCCCEEEEcCccc------------------------------ccCHHHHhhCcCCEEEecCccccCCCCccHH
Confidence            67775  899999999999                              9999999999999999999999999999999


Q ss_pred             HHHHHHH
Q 021895          277 KQVGCFT  283 (306)
Q Consensus       277 ~~A~~~~  283 (306)
                      +||+...
T Consensus       123 ~~Ai~~G  129 (314)
T 3tqq_A          123 QRAILAG  129 (314)
T ss_dssp             HHHHHHT
T ss_pred             HHHHHcC
Confidence            9996543

>2bw0_A 10-FTHFDH, 10-formyltetrahydrofolate dehydrogenase; nucleotide biosynthesis, oxidoreductase; 1.7A {Homo sapiens} SCOP: b.46.1.1 c.65.1.1 PDB: 2cfi_A* 1s3i_A

Probab=99.87  E-value=1.9e-22  Score=191.36  Aligned_cols=122  Identities=16%  Similarity=0.148  Sum_probs=97.1

Q ss_pred             CceEEEEEeCCc--chHHHHHHhhhcCCCCeEEEEEeeCCCCC-CChhHHHHHHhCCCCEEEeCCCC--CChHHHHHHHh
Q 021895          128 KYKVAVLASKQE--HCLVDFLYGWQEGKLPVEITCVISNHDRG-PNSHVIRFLERHGIPYHYLCAKE--NEREEELLELV  202 (306)
Q Consensus       128 ~~riavl~S~~g--~~L~~ll~~~~~g~l~~~I~~Visn~~~~-~~~~~~~~A~~~gIp~~~~~~k~--~~~e~e~~~~v  202 (306)
                      ++||+||++.+.  .+|++|++    .  .++|++|||.+|+. ..+++.++|+++|||++++....  ...++++++.+
T Consensus        22 ~mrIvf~G~~~fa~~~L~~L~~----~--~~~i~~Vvt~pd~~~~~~~v~~~A~~~gIpv~~~~~~~~~~~~~~~~~~~l   95 (329)
T 2bw0_A           22 SMKIAVIGQSLFGQEVYCHLRK----E--GHEVVGVFTVPDKDGKADPLGLEAEKDGVPVFKYSRWRAKGQALPDVVAKY   95 (329)
T ss_dssp             CCEEEEECCHHHHHHHHHHHHH----T--TCEEEEEEECCCCSSCCCHHHHHHHHHTCCEEECSCCEETTEECHHHHHHH
T ss_pred             CCEEEEEcCcHHHHHHHHHHHH----C--CCeEEEEEeCCCcCCCCCHHHHHHHHcCCCEEecCcccccccccHHHHHHH
Confidence            479999976542  34555443    3  37999999988762 23688999999999999986321  12236677777


Q ss_pred             c--CCcEEEEeccCCCCcCchhhhhhhhhhhhhccCCCccccccccCCHhHHhhcCCCeeEeCCCCCCCCCCCcHHHHHH
Q 021895          203 Q--NTDFLVLARYMQPVPLQKEAYLGYKLLESLSSKGSLTSYFNMILSGKFLRSYGKDVINIHHGLLPSFKGGKPAKQVG  280 (306)
Q Consensus       203 ~--~~D~vVlA~ym~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~~~l~~~~~~iINiHpsLLP~f~Ga~p~~~A~  280 (306)
                      +  ++|++|+|+||+                              ||++++++.|+.++||+||||||+|||++|++||+
T Consensus        96 ~~~~~Dliv~a~y~~------------------------------ilp~~il~~~~~g~iNiHpSLLP~yRG~~pi~~Ai  145 (329)
T 2bw0_A           96 QALGAELNVLPFCSQ------------------------------FIPMEIISAPRHGSIIYHPSLLPRHRGASAINWTL  145 (329)
T ss_dssp             HTTCCSEEEESSCSS------------------------------CCCHHHHTCSTTCEEEEESSCTTTTBSSCHHHHHH
T ss_pred             HhcCCCEEEEeehhh------------------------------hCCHHHHhhCcCCEEEEcCCcCcCCCCcCHHHHHH
Confidence            6  899999999999                              99999999999999999999999999999999996


Q ss_pred             HHHhh
Q 021895          281 CFTFC  285 (306)
Q Consensus       281 ~~~~~  285 (306)
                      ...-.
T Consensus       146 ~~G~~  150 (329)
T 2bw0_A          146 IHGDK  150 (329)
T ss_dssp             HTTCS
T ss_pred             HcCCC
Confidence            55433

>3p96_A Phosphoserine phosphatase SERB; ssgcid, structural genomics, structural genomics center for infectious disease, hydrolas; 2.05A {Mycobacterium avium}

Probab=99.79  E-value=7.7e-19  Score=166.67  Aligned_cols=161  Identities=10%  Similarity=0.059  Sum_probs=115.9

Q ss_pred             CCcccEEEEEEcCCccchHHHHHHHHHhcCCeEeEeeeeccCCCCeEEEEEEEEeCCCCCCHHHHHHHHHHHHhhhhccc
Q 021895           38 PTLTHGIHVFHCPDEVGIVAKLSECIASRGGNILAADVFVPEKKNVFYSRSEFIFDPIKWPREQMDEDFFKLSKMFNAMR  117 (306)
Q Consensus        38 p~~~k~ILTViGpDRpGIVAaVS~~LAe~G~NIlD~sQ~id~l~G~FfMrmeVdv~~~~~~~eeLreaL~~la~elgl~~  117 (306)
                      +...+++||++|||||||||+||++|+++||||+|++|++.  +|+|+||++|+.++...+.++|+++|+.++++++|.|
T Consensus         8 ~~~~~~~lt~~g~Dr~Giv~~vs~~l~~~~~nI~d~~q~~~--~~~f~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~   85 (415)
T 3p96_A            8 PPKVSVLITVTGVDQPGVTATLFEVLSRHGVELLNVEQVVI--RHRLTLGVLVCCPADVADGPALRHDVEAAIRKVGLDV   85 (415)
T ss_dssp             -CCEEEEEEEEEECCTTHHHHHHHHHTTTTCEEEEEEEEEE--TTEEEEEEEEEECHHHHTSHHHHHHHHHHHHHTTCEE
T ss_pred             CCCCeEEEEEEcCCCCCHHHHHHHHHHHCCCCEEEeeeEEE--CCEeEEEEEEEecCCcCCHHHHHHHHHHHHHHcCeEE
Confidence            34568999999999999999999999999999999999975  7999999999987643356999999999999999754


Q ss_pred             ceeeecCCCC-------CceEEEEEeCC--cchHHHHHHhhhcCCCCeEEEEEeeCCCCCCChhHHHHHHhCCCCEEEeC
Q 021895          118 SVVRVPDIDP-------KYKVAVLASKQ--EHCLVDFLYGWQEGKLPVEITCVISNHDRGPNSHVIRFLERHGIPYHYLC  188 (306)
Q Consensus       118 ~~~rl~~~~~-------~~riavl~S~~--g~~L~~ll~~~~~g~l~~~I~~Visn~~~~~~~~~~~~A~~~gIp~~~~~  188 (306)
                         ++.+.++       ..-+..+.+..  ++++.++...+.+..++++-...+++.+            ..++++++.-
T Consensus        86 ---~~~~~~~~~~~~~~~~~~~~llg~~~~~~~~~~i~~~l~~~~~Ni~~l~~~~~~~------------~~~~~~~v~~  150 (415)
T 3p96_A           86 ---SIERSDDVPIIREPSTHTIFVLGRPITAAAFGAVAREVAALGVNIDLIRGVSDYP------------VIGLELRVSV  150 (415)
T ss_dssp             ---EEEECSSSCSSCCCCSEEEEEEESSCCHHHHHHHHHHHHHTTCEEEEEEEEESSS------------SEEEEEEEEC
T ss_pred             ---EEEECCcccccCCCCcEEEEEEeCCCCHHHHHHHHHHHHHcCCCccceeeccCCC------------ceEEEEEeeC
Confidence               3443222       12244444444  6788888887777666655555566431            2356666533


Q ss_pred             CCCCCh--HHHHHHHhc--CCcEEEEeccCC
Q 021895          189 AKENER--EEELLELVQ--NTDFLVLARYMQ  215 (306)
Q Consensus       189 ~k~~~~--e~e~~~~v~--~~D~vVlA~ym~  215 (306)
                      .+.+..  ++++.++.+  +.|++|+..-|.
T Consensus       151 ~~~~~~~l~~~l~~l~~~~~vD~~v~~~~~~  181 (415)
T 3p96_A          151 PPGADEALRTALNRVSSEEHVDVAVEDYTLE  181 (415)
T ss_dssp             CTTCHHHHHHHHHHHHHHHTCEEEEEECSTT
T ss_pred             CCCCHHHHHHHHHHHhhhcCcCccccccccc
Confidence            333222  256666665  899999987544

>1zpv_A ACT domain protein; structural genomics, PSI, protein structure INIT midwest center for structural genomics, MCSG, unknown funct; 1.90A {Streptococcus pneumoniae} SCOP: d.58.18.7

Probab=99.58  E-value=1.5e-14  Score=110.36  Aligned_cols=75  Identities=24%  Similarity=0.156  Sum_probs=68.3

Q ss_pred             cccEEEEEEcCCccchHHHHHHHHHhcCCeEeEeeeeccCCCCeEEEEEEEEeCCCCCCHHHHHHHHHHHHhhhhccc
Q 021895           40 LTHGIHVFHCPDEVGIVAKLSECIASRGGNILAADVFVPEKKNVFYSRSEFIFDPIKWPREQMDEDFFKLSKMFNAMR  117 (306)
Q Consensus        40 ~~k~ILTViGpDRpGIVAaVS~~LAe~G~NIlD~sQ~id~l~G~FfMrmeVdv~~~~~~~eeLreaL~~la~elgl~~  117 (306)
                      .++++|++.|+||||++++||++|+++|+||++++++..  .|.|+|++++++++ ....++|.++|.++++++++.+
T Consensus         3 ~~~~~l~v~~~DrpGila~vt~~la~~~~NI~~i~~~~~--~~~~~~~i~v~~~~-~~~l~~l~~~L~~~~~~~~~~~   77 (91)
T 1zpv_A            3 AMKAIITVVGKDKSGIVAGVSGKIAELGLNIDDISQTVL--DEYFTMMAVVSSDE-KQDFTYLRNEFEAFGQTLNVKI   77 (91)
T ss_dssp             CEEEEEEEEESCCTTHHHHHHHHHHHTTCEEEEEEEEEE--TTEEEEEEEEEESS-CCCHHHHHHHHHHHHHHHTEEE
T ss_pred             CceEEEEEEECCCCCHHHHHHHHHHHcCCCEEEEEeEEE--cCEEEEEEEEEeCC-CCCHHHHHHHHHHHHHHcCCEE
Confidence            467999999999999999999999999999999999865  48999999999986 4689999999999999999654

>2nyi_A Unknown protein; protein structure initiative, PSI, center for eukaryotic structural genomics, CESG, structural genomics; 1.80A {Galdieria sulphuraria}

Probab=99.57  E-value=3.6e-15  Score=130.58  Aligned_cols=79  Identities=19%  Similarity=0.222  Sum_probs=70.7

Q ss_pred             CCCcccEEEEEEcCCccchHHHHHHHHHhcCCeEeEeeeeccC----CCCeEEEEEEEEeCCCCCCHHHHHHHHHHHHhh
Q 021895           37 SPTLTHGIHVFHCPDEVGIVAKLSECIASRGGNILAADVFVPE----KKNVFYSRSEFIFDPIKWPREQMDEDFFKLSKM  112 (306)
Q Consensus        37 ~p~~~k~ILTViGpDRpGIVAaVS~~LAe~G~NIlD~sQ~id~----l~G~FfMrmeVdv~~~~~~~eeLreaL~~la~e  112 (306)
                      .....+++|||+|+|||||||+||++|+++|+||++++|+++.    ..+.|+|+++++.++ ..+ ++|+++|.+++++
T Consensus        88 ~~~~~~~iltv~g~DrpGiva~Vt~~La~~g~nI~~~~~~t~~~~~~~~~~F~m~~~~~~~~-~~~-~~l~~~l~~~a~~  165 (195)
T 2nyi_A           88 SPDTREYELYVEGPDSEGIVEAVTAVLAKKGANIVELETETLPAPFAGFTLFRMGSRVAFPF-PLY-QEVVTALSRVEEE  165 (195)
T ss_dssp             CTTEEEEEEEEEEECCTTHHHHHHHHHHHTTCEEEEEEEEEEECSSTTCEEEEEEEEEEEEG-GGH-HHHHHHHHHHHHH
T ss_pred             CCCCcEEEEEEEeCCCcCHHHHHHHHHHHcCCCEEEceeeecccccCCCCeEEEEEEEEcCC-Ccc-HHHHHHHHHHHHH
Confidence            5567889999999999999999999999999999999999764    568999999999874 456 9999999999999


Q ss_pred             hhccc
Q 021895          113 FNAMR  117 (306)
Q Consensus       113 lgl~~  117 (306)
                      +||.|
T Consensus       166 l~~di  170 (195)
T 2nyi_A          166 FGVDI  170 (195)
T ss_dssp             HTCEE
T ss_pred             cCeEE
Confidence            99743

>1u8s_A Glycine cleavage system transcriptional repressor, putative; structural genomics, protein structure initiative (PSI), domain swapping; 2.45A {Vibrio cholerae} SCOP: d.58.18.5 d.58.18.5

Probab=99.55  E-value=3.2e-14  Score=123.04  Aligned_cols=73  Identities=14%  Similarity=0.130  Sum_probs=65.8

Q ss_pred             ccEEEEEEcCCccchHHHHHHHHHhcCCeEeEeeeeccCCCCeEEEEEEEEeCCCCCCHHHHHHHHHHHHhhhhccc
Q 021895           41 THGIHVFHCPDEVGIVAKLSECIASRGGNILAADVFVPEKKNVFYSRSEFIFDPIKWPREQMDEDFFKLSKMFNAMR  117 (306)
Q Consensus        41 ~k~ILTViGpDRpGIVAaVS~~LAe~G~NIlD~sQ~id~l~G~FfMrmeVdv~~~~~~~eeLreaL~~la~elgl~~  117 (306)
                      .+++|||+|+|||||||+||++|+++||||++++|+..  .|.|+|+++|+.+.  ...++|+++|.++++++++.+
T Consensus         5 ~~~~itv~~~DrpGiva~vt~~La~~g~NI~d~~~~~~--~~~f~~~~~v~~~~--~~~~~l~~~L~~~~~~~~~~~   77 (192)
T 1u8s_A            5 QHLVITAVGTDRPGICNEVVRLVTQAGCNIIDSRIAMF--GKEFTLLMLISGSP--SNITRVETTLPLLGQQHDLIT   77 (192)
T ss_dssp             EEEEEEEEEECCTTHHHHHHHHHHHTTCEEEEEEEEEE--TTEEEEEEEEEECH--HHHHHHHHHHHHHHHHHTCEE
T ss_pred             cEEEEEEEcCCCCcHHHHHHHHHHHCCCCEEeeeeeec--CCceEEEEEEecCC--CCHHHHHHHHHHHHHhcCCEE
Confidence            36999999999999999999999999999999999874  79999999998764  368999999999999998654

>2nyi_A Unknown protein; protein structure initiative, PSI, center for eukaryotic structural genomics, CESG, structural genomics; 1.80A {Galdieria sulphuraria}

Probab=99.52  E-value=4.5e-14  Score=123.62  Aligned_cols=74  Identities=11%  Similarity=0.054  Sum_probs=65.7

Q ss_pred             CcccEEEEEEcCCccchHHHHHHHHHhcCCeEeEeeeeccCCCCeEEEEEEEEeCCCCCC----HHHHHHHHHHHHhhhh
Q 021895           39 TLTHGIHVFHCPDEVGIVAKLSECIASRGGNILAADVFVPEKKNVFYSRSEFIFDPIKWP----REQMDEDFFKLSKMFN  114 (306)
Q Consensus        39 ~~~k~ILTViGpDRpGIVAaVS~~LAe~G~NIlD~sQ~id~l~G~FfMrmeVdv~~~~~~----~eeLreaL~~la~elg  114 (306)
                      ++++++|||+|||||||||+||++|+++||||+|++|++.  .|.|+|+++|+.++.  +    .++|+++|.+++++++
T Consensus         2 ~~~~~~ltv~~~DrpGiva~vs~~La~~g~NI~da~q~~~--~~~f~m~~~v~~~~~--~~~~~~~~l~~~L~~~~~~~~   77 (195)
T 2nyi_A            2 ETQSFVVSVAGSDRVGIVHDFSWALKNISANVESSRMACL--GGDFAMIVLVSLNAK--DGKLIQSALESALPGFQISTR   77 (195)
T ss_dssp             CCEEEEEEEEEECCTTHHHHHHHHHHHTTCEEEEEEEEEE--TTEEEEEEEEEESSS--SSHHHHHHHHHHSTTCEEEEE
T ss_pred             CceEEEEEEEeCCCCcHHHHHHHHHHHCCCCEEEEEeEEE--CCeEEEEEEEEecCc--cchhHHHHHHHHHHHHHHhcC
Confidence            4578999999999999999999999999999999999975  799999999987642  4    7899999999888888


Q ss_pred             cc
Q 021895          115 AM  116 (306)
Q Consensus       115 l~  116 (306)
                      +.
T Consensus        78 ~~   79 (195)
T 2nyi_A           78 RA   79 (195)
T ss_dssp             EC
T ss_pred             Ce
Confidence            54

>1u8s_A Glycine cleavage system transcriptional repressor, putative; structural genomics, protein structure initiative (PSI), domain swapping; 2.45A {Vibrio cholerae} SCOP: d.58.18.5 d.58.18.5

Probab=99.46  E-value=2.9e-13  Score=117.03  Aligned_cols=80  Identities=15%  Similarity=0.135  Sum_probs=70.7

Q ss_pred             CCCcccEEEEEEcCCccchHHHHHHHHHhcCCeEeEeeeeccC------CCCeEEEEEEEEeCCCCCCHHHHHHHHHHHH
Q 021895           37 SPTLTHGIHVFHCPDEVGIVAKLSECIASRGGNILAADVFVPE------KKNVFYSRSEFIFDPIKWPREQMDEDFFKLS  110 (306)
Q Consensus        37 ~p~~~k~ILTViGpDRpGIVAaVS~~LAe~G~NIlD~sQ~id~------l~G~FfMrmeVdv~~~~~~~eeLreaL~~la  110 (306)
                      .++...++|++.|+||+|||++|+++|+++|+||.+++++++.      ..+.|+|+++++.++ ..+.++|+++|.+++
T Consensus        88 ~~~~~~~~l~v~~~D~~Gil~~v~~~l~~~~~nI~~~~~~t~~~~~~~~~~~~F~~~~~~~~~~-~~~~~~l~~~l~~~~  166 (192)
T 1u8s_A           88 QTHAYTVEVYVESDDKLGLTEKFTQFFAQRQIGMASLSAQTISKDKLHSEQNQFHIAISARVDS-GCNLMQLQEEFDALC  166 (192)
T ss_dssp             CCCSEEEEEEEEESCCTTHHHHHHHHHHHTTCCEEEEEEEEEC--------CEEEEEEEEEECT-TSCHHHHHHHHHHHH
T ss_pred             ccCCceEEEEEEeCCCccHHHHHHHHHHHcCCcHHHhhhhcccCCccCCCCCEEEEEEEEeCCC-CCCHHHHHHHHHHHH
Confidence            4556789999999999999999999999999999999999764      578999999999875 668999999999999


Q ss_pred             hhhhccc
Q 021895          111 KMFNAMR  117 (306)
Q Consensus       111 ~elgl~~  117 (306)
                      +++++.|
T Consensus       167 ~~~~~~~  173 (192)
T 1u8s_A          167 TALDVQG  173 (192)
T ss_dssp             HHHTCEE
T ss_pred             HHhCceE
Confidence            9999743

>1zgh_A Methionyl-tRNA formyltransferase; southeast collaboratory FO structural genomics, PSI, protein structure initiative, secsg; 2.05A {Clostridium thermocellum} SCOP: b.46.1.1 c.65.1.1

Probab=99.29  E-value=1.4e-12  Score=120.94  Aligned_cols=50  Identities=16%  Similarity=0.360  Sum_probs=45.7

Q ss_pred             CCcEEEEeccCCCCcCchhhhhhhhhhhhhccCCCccccccccCCHhHHhhcCCCeeEeCCCCCCCCCCCcHHHHHHHHH
Q 021895          204 NTDFLVLARYMQPVPLQKEAYLGYKLLESLSSKGSLTSYFNMILSGKFLRSYGKDVINIHHGLLPSFKGGKPAKQVGCFT  283 (306)
Q Consensus       204 ~~D~vVlA~ym~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~~~l~~~~~~iINiHpsLLP~f~Ga~p~~~A~~~~  283 (306)
                      ++|++|+|+||+                              ||++++++.|  ++||+||||||+|||++|++||+...
T Consensus        77 ~pDliv~~~y~~------------------------------ilp~~il~~~--g~iNiHpSLLP~yRG~~pi~~Ai~~G  124 (260)
T 1zgh_A           77 NPEYILFPHWSW------------------------------IIPKEIFENF--TCVVFHMTDLPFGRGGSPLQNLIERG  124 (260)
T ss_dssp             CCSEEEESSCCS------------------------------CCCHHHHTTS--CEEEEESSCTTTTEESCHHHHHHHTT
T ss_pred             CCCEEEEecccc------------------------------ccCHHHHccC--CEEEEeCCcCCCCCCcCHHHHHHHcC
Confidence            999999999999                              9999999985  59999999999999999999996554


Q ss_pred             hh
Q 021895          284 FC  285 (306)
Q Consensus       284 ~~  285 (306)
                      -.
T Consensus       125 ~~  126 (260)
T 1zgh_A          125 IK  126 (260)
T ss_dssp             CC
T ss_pred             CC
Confidence            43

>2ko1_A CTR148A, GTP pyrophosphokinase; homodimer, alpha+beta, transferase, structural genomics, PSI-2, protein structure initiative; NMR {Chlorobaculum tepidum} PDB: 3ibw_A

Probab=98.40  E-value=1.4e-06  Score=64.89  Aligned_cols=65  Identities=12%  Similarity=0.071  Sum_probs=50.5

Q ss_pred             cccEEEEEEcCCccchHHHHHHHHHhcCCeEeEeeeeccCCCCeEEEEEEEEeCCCCCCHHHHHHHHHHHH
Q 021895           40 LTHGIHVFHCPDEVGIVAKLSECIASRGGNILAADVFVPEKKNVFYSRSEFIFDPIKWPREQMDEDFFKLS  110 (306)
Q Consensus        40 ~~k~ILTViGpDRpGIVAaVS~~LAe~G~NIlD~sQ~id~l~G~FfMrmeVdv~~~~~~~eeLreaL~~la  110 (306)
                      ..++.|++.++||||++++|++.|+++|+||.++++...  .+.+.+.+.++.++    .+++.+.++++.
T Consensus         3 ~~~~~l~v~~~Dr~G~L~~I~~~la~~~inI~~i~~~~~--~~~~~~~i~v~~~~----~~~l~~l~~~L~   67 (88)
T 2ko1_A            3 DFLAGIRIVGEDKNGMTNQITGVISKFDTNIRTIVLNAK--DGIFTCNLMIFVKN----TDKLTTLMDKLR   67 (88)
T ss_dssp             CEEEEEEEEEECCTTHHHHHHHHHTTSSSCEEEEEEEEC--SSEEEEEEEEEESS----HHHHHHHHHHHT
T ss_pred             cEEEEEEEEEECCCcHHHHHHHHHHHCCCCeEEEEEEEc--CCEEEEEEEEEECC----HHHHHHHHHHHh
Confidence            456789999999999999999999999999999999653  34666777777653    455555555544

>1y7p_A Hypothetical protein AF1403; structural genomics, protein structure initiative, PSI, alpha-beta-alpha sandwich; HET: RIP; 1.90A {Archaeoglobus fulgidus} SCOP: c.23.1.7 d.58.18.12

Probab=98.03  E-value=1.4e-05  Score=72.88  Aligned_cols=138  Identities=20%  Similarity=0.214  Sum_probs=83.5

Q ss_pred             ccEEEEEEcCCccchHHHHHHHHHhcCCeEeEeeeeccCC---CCeEEEEEEEEeCCCCCCHHHHHHHHHHHHhhhhccc
Q 021895           41 THGIHVFHCPDEVGIVAKLSECIASRGGNILAADVFVPEK---KNVFYSRSEFIFDPIKWPREQMDEDFFKLSKMFNAMR  117 (306)
Q Consensus        41 ~k~ILTViGpDRpGIVAaVS~~LAe~G~NIlD~sQ~id~l---~G~FfMrmeVdv~~~~~~~eeLreaL~~la~elgl~~  117 (306)
                      |..-|.+.+.||+|+.+.|++.|+++++||..++|....-   +|...|.  +++++.  .++++-+.|+++-.=+.+  
T Consensus         3 ~~VtL~I~a~DRpGLLsDIt~vLAe~kiNIltIn~~~~~kG~~ng~A~I~--IEV~d~--~Le~LL~kLrkI~gV~~V--   76 (223)
T 1y7p_A            3 MLRGLRIIAENKIGVLRDLTTIIAEEGGNITFAQTFLIKHGEHEGKALIY--FEIEGG--DFEKILERVKTFDYIIEI--   76 (223)
T ss_dssp             -CEEEEEEEECCTTHHHHHHHHCC----CEEEEEEEECCSSTTTTEEEEE--EEECSS--CHHHHHHHHHTCTTEEEE--
T ss_pred             ceEEEEEEEcCCCCHHHHHHHHHHHcCCCceEEEEEccccCCcCCEEEEE--EEECCC--CHHHHHHHHhCCCCeeEE--
Confidence            5677899999999999999999999999999999987531   3567777  555542  667777777654322221  


Q ss_pred             ceeeecCCCC--CceEEEEEeCCcchHHHHHHhhhcCCCCeEEEEEeeCCCCCCChhHHHHHHhCC-----CCEEEeCCC
Q 021895          118 SVVRVPDIDP--KYKVAVLASKQEHCLVDFLYGWQEGKLPVEITCVISNHDRGPNSHVIRFLERHG-----IPYHYLCAK  190 (306)
Q Consensus       118 ~~~rl~~~~~--~~riavl~S~~g~~L~~ll~~~~~g~l~~~I~~Visn~~~~~~~~~~~~A~~~g-----Ip~~~~~~k  190 (306)
                        .+....++  -+||.+++.|.- .-|-.+                         .++.-|.+|+     |.+..++.-
T Consensus        77 --~Rv~~~~~i~gkrvii~gggaq-v~qva~-------------------------gai~eadrhnirgerisvdt~p~v  128 (223)
T 1y7p_A           77 --EEEESFERVFGKRVIILGGGAL-VSQVAI-------------------------GAISEADRHNLRGERISVDTMPVV  128 (223)
T ss_dssp             --EEECCHHHHTCEEEEEEECHHH-HHHHHH-------------------------HHHHHHHHHHHTSCCEEEEEEECC
T ss_pred             --EEEcchhhhcCcEEEEECCcHH-HHHHHH-------------------------hhcchhhhcccccceeeeecceec
Confidence              12211111  257777776531 111111                         1345566776     445555533


Q ss_pred             CCChHHHHHHHhc------CCcEEEEeccCC
Q 021895          191 ENEREEELLELVQ------NTDFLVLARYMQ  215 (306)
Q Consensus       191 ~~~~e~e~~~~v~------~~D~vVlA~ym~  215 (306)
                      +   |+++.+.+.      ++.++||||-+-
T Consensus       129 g---e~~l~~av~av~~lpr~~~lvlags~m  156 (223)
T 1y7p_A          129 G---EEEIAEAVKAVSRLHRAEVLVLAGGIM  156 (223)
T ss_dssp             S---HHHHHHHHHHGGGSTTEEEEEEESSBC
T ss_pred             C---HHHHHHHHHHHhhccccceeeEecccc
Confidence            2   556665553      899999999866

>3p96_A Phosphoserine phosphatase SERB; ssgcid, structural genomics, structural genomics center for infectious disease, hydrolas; 2.05A {Mycobacterium avium}

Probab=97.75  E-value=0.00022  Score=67.36  Aligned_cols=91  Identities=11%  Similarity=-0.026  Sum_probs=68.8

Q ss_pred             CcccEEEEEEcCC-ccchHHHHHHHHHhcCCeEeEeeeeccCCCCeEEEEEEEEeCCCCCCHHHHHHHHHHHHhhhhccc
Q 021895           39 TLTHGIHVFHCPD-EVGIVAKLSECIASRGGNILAADVFVPEKKNVFYSRSEFIFDPIKWPREQMDEDFFKLSKMFNAMR  117 (306)
Q Consensus        39 ~~~k~ILTViGpD-RpGIVAaVS~~LAe~G~NIlD~sQ~id~l~G~FfMrmeVdv~~~~~~~eeLreaL~~la~elgl~~  117 (306)
                      ...++++++.|.| ++|++++|+.+++++|.||.++.....  ...|.+-+.+.+++  .+.+++++++.++++++++..
T Consensus        98 ~~~~~~~~llg~~~~~~~~~~i~~~l~~~~~Ni~~l~~~~~--~~~~~~~~~v~~~~--~~~~~l~~~l~~l~~~~~vD~  173 (415)
T 3p96_A           98 EPSTHTIFVLGRPITAAAFGAVAREVAALGVNIDLIRGVSD--YPVIGLELRVSVPP--GADEALRTALNRVSSEEHVDV  173 (415)
T ss_dssp             CCCSEEEEEEESSCCHHHHHHHHHHHHHTTCEEEEEEEEES--SSSEEEEEEEECCT--TCHHHHHHHHHHHHHHHTCEE
T ss_pred             CCCcEEEEEEeCCCCHHHHHHHHHHHHHcCCCccceeeccC--CCceEEEEEeeCCC--CCHHHHHHHHHHHhhhcCcCc
Confidence            3568999999999 999999999999999999999988642  34455555566554  578999999999999998654


Q ss_pred             ceeeecC-CCCCceEEEE
Q 021895          118 SVVRVPD-IDPKYKVAVL  134 (306)
Q Consensus       118 ~~~rl~~-~~~~~riavl  134 (306)
                      . +.-.. ..+++|.++|
T Consensus       174 ~-v~~~~~~~~~~k~viF  190 (415)
T 3p96_A          174 A-VEDYTLERRAKRLIVF  190 (415)
T ss_dssp             E-EEECSTTTTCCCEEEE
T ss_pred             c-cccccccccCCcEEEE
Confidence            3 22222 2455676665

>2f1f_A Acetolactate synthase isozyme III small subunit; ferredoxin fold, ACT domain, transferase; HET: P33 1PE; 1.75A {Escherichia coli} SCOP: d.58.18.6 d.58.18.6

Probab=97.63  E-value=7.4e-05  Score=64.86  Aligned_cols=52  Identities=15%  Similarity=0.179  Sum_probs=44.1

Q ss_pred             cccEEEEEEcCCccchHHHHHHHHHhcCCeEeEeeeeccCCCCeEEEEEEEE
Q 021895           40 LTHGIHVFHCPDEVGIVAKLSECIASRGGNILAADVFVPEKKNVFYSRSEFI   91 (306)
Q Consensus        40 ~~k~ILTViGpDRpGIVAaVS~~LAe~G~NIlD~sQ~id~l~G~FfMrmeVd   91 (306)
                      +|++.|++...|+||+.++|++.++++|+||..++.....+.|...|.+.++
T Consensus         1 ~~~~~IsV~v~NrpGvLarIt~lfs~rg~NI~Sl~v~~t~d~~~sriti~V~   52 (164)
T 2f1f_A            1 MARRILSVLLENESGALSRVIGLFSQRGYNIESLTVAPTDDPTLSRMTIQTV   52 (164)
T ss_dssp             -CEEEEEEEEECCTTHHHHHHHHHHTTTCCCSEEEEEECSCSSEEEEEEEEE
T ss_pred             CeEEEEEEEEeCCCcHHHHHHHHHHHCCCCeeeceeeecCCCCEEEEEEEEe
Confidence            4689999999999999999999999999999998886544457777777776

>2f06_A Conserved hypothetical protein; structural genomics hypothetical protein, PSI, protein struc initiative; HET: MSE HIS; 2.10A {Bacteroides thetaiotaomicron} SCOP: d.58.18.11 d.58.18.11

Probab=97.51  E-value=0.0015  Score=53.39  Aligned_cols=98  Identities=9%  Similarity=0.013  Sum_probs=62.3

Q ss_pred             CCcccEEEEEEcCCccchHHHHHHHHHhcCCeEeEeeeeccCCCCeEEEEEEEEeCCCCCCHHHHHHHHHHHHhhhhccc
Q 021895           38 PTLTHGIHVFHCPDEVGIVAKLSECIASRGGNILAADVFVPEKKNVFYSRSEFIFDPIKWPREQMDEDFFKLSKMFNAMR  117 (306)
Q Consensus        38 p~~~k~ILTViGpDRpGIVAaVS~~LAe~G~NIlD~sQ~id~l~G~FfMrmeVdv~~~~~~~eeLreaL~~la~elgl~~  117 (306)
                      -+||...|++.-+|+||+.++|++.|+++|+||..+.|....+.|.  .|+.+  .    +.+..++.|++.    |...
T Consensus         2 ~~m~~~~i~v~v~d~~G~l~~i~~~la~~~inI~~i~~~~~~~~~~--~~~~~--~----d~~~a~~~L~~~----G~~v   69 (144)
T 2f06_A            2 NAMVAKQLSIFLENKSGRLTEVTEVLAKENINLSALCIAENADFGI--LRGIV--S----DPDKAYKALKDN----HFAV   69 (144)
T ss_dssp             CSSEEEEEEEEECSSSSHHHHHHHHHHHTTCCEEEEEEEECSSCEE--EEEEE--S----CHHHHHHHHHHT----TCCE
T ss_pred             CccEEEEEEEEecCCCcHHHHHHHHHHHCCCCEEEEEEEecCCCCE--EEEEe--C----CHHHHHHHHHHc----CCeE
Confidence            3568899999999999999999999999999999998864322232  34432  2    456777777643    3211


Q ss_pred             ceeeecCCCCCceEEEEEeCCcchHHHHHHhhhcCCCC
Q 021895          118 SVVRVPDIDPKYKVAVLASKQEHCLVDFLYGWQEGKLP  155 (306)
Q Consensus       118 ~~~rl~~~~~~~riavl~S~~g~~L~~ll~~~~~g~l~  155 (306)
                       .+       ...|++-.......+..++..+.+..++
T Consensus        70 -~~-------~svv~v~~~d~pGvla~i~~~L~~~~In   99 (144)
T 2f06_A           70 -NI-------TDVVGISCPNVPGALAKVLGFLSAEGVF   99 (144)
T ss_dssp             -EE-------EEEEEEEEESSTTHHHHHHHHHHHTTCC
T ss_pred             -ee-------eeEEEEEeCCCCcHHHHHHHHHHHCCCC
Confidence             01       1234444444434566666665555443

>2re1_A Aspartokinase, alpha and beta subunits; structural genomics, protein structure initiative, midwest center for structural genomics; 2.75A {Neisseria meningitidis MC58}

Probab=97.39  E-value=0.001  Score=56.37  Aligned_cols=110  Identities=11%  Similarity=-0.027  Sum_probs=71.3

Q ss_pred             CCCcccEEEEEEc-CCccchHHHHHHHHHhcCCeEeEeeeeccCCCCeEEEEEEEEeCCCCCCHHHHHHHHHHHHhhhhc
Q 021895           37 SPTLTHGIHVFHC-PDEVGIVAKLSECIASRGGNILAADVFVPEKKNVFYSRSEFIFDPIKWPREQMDEDFFKLSKMFNA  115 (306)
Q Consensus        37 ~p~~~k~ILTViG-pDRpGIVAaVS~~LAe~G~NIlD~sQ~id~l~G~FfMrmeVdv~~~~~~~eeLreaL~~la~elgl  115 (306)
                      +-...-..|++.| +|++|+.++|.+.|+++|+||..+.|.... +|.+.+++.++-    .+.++..+.|+++.++++.
T Consensus        20 a~~~~~~~i~v~~~~~~~G~~~~if~~La~~~Invd~i~~s~~~-~g~~~isf~v~~----~~~~~a~~~l~~~~~~l~~   94 (167)
T 2re1_A           20 AFDKNQARINVRGVPDKPGVAYQILGAVADANIEVDMIIQNVGS-EGTTDFSFTVPR----GDYKQTLEILSERQDSIGA   94 (167)
T ss_dssp             EEECCCEEEEEEEEECCTTHHHHHHHHHHTTTCCCCCEEEC-----CEEEEEEEECG----GGHHHHHHHHHHSSTTTTC
T ss_pred             EecCCEEEEEEecCCCCcCHHHHHHHHHHHcCCeEEEEEcCCCC-CCeeEEEEEEec----hHHHHHHHHHHHHHHHcCC
Confidence            3344557889997 999999999999999999999999986433 366776776653    2456667778777666663


Q ss_pred             ccceeeecCCCCCceEEEEEeC---CcchHHHHHHhhhcCCCC
Q 021895          116 MRSVVRVPDIDPKYKVAVLASK---QEHCLVDFLYGWQEGKLP  155 (306)
Q Consensus       116 ~~~~~rl~~~~~~~riavl~S~---~g~~L~~ll~~~~~g~l~  155 (306)
                      ..    +.-.+.-.+|.|.+.+   ...-+..++..+.+-.++
T Consensus        95 ~~----i~~~~~~a~vsvvG~~m~~~~Gv~a~i~~aL~~~~In  133 (167)
T 2re1_A           95 AS----IDGDDTVCKVSAVGLGMRSHVGVAAKIFRTLAEEGIN  133 (167)
T ss_dssp             SE----EEEESSEEEEEEECSSCTTCCCHHHHHHHHHHHTTCC
T ss_pred             ce----EEecCCEEEEEEECCCcCCCcCHHHHHHHHHHHCCCc
Confidence            11    1222345577777776   222345555555444333

>2pc6_A Probable acetolactate synthase isozyme III (small; regulatory subunit, structural genomi protein structure initiative; HET: MSE; 2.50A {Nitrosomonas europaea atcc 19718} SCOP: d.58.18.6 d.58.18.6

Probab=97.30  E-value=0.00034  Score=60.81  Aligned_cols=67  Identities=18%  Similarity=0.095  Sum_probs=50.5

Q ss_pred             cccEEEEEEcCCccchHHHHHHHHHhcCCeEeEeeeeccCCCCeEEEEEEEEeCCCCCCHHHHHHHHHH
Q 021895           40 LTHGIHVFHCPDEVGIVAKLSECIASRGGNILAADVFVPEKKNVFYSRSEFIFDPIKWPREQMDEDFFK  108 (306)
Q Consensus        40 ~~k~ILTViGpDRpGIVAaVS~~LAe~G~NIlD~sQ~id~l~G~FfMrmeVdv~~~~~~~eeLreaL~~  108 (306)
                      .|++.|++...|+||..++|++.++++|+||..++.....+.|...|.+.++-+  ....+++.+.+.+
T Consensus         2 ~m~~~IsV~veNrpGvL~rI~~lfs~rg~NI~Sl~v~~t~d~g~sritivV~~d--~~~leql~kQL~K   68 (165)
T 2pc6_A            2 HMRHIISLLMENEAGALSRVAGLFSARGYNIESLSVAPTEDPTLSRMTLVTNGP--DEIVEQITKQLNK   68 (165)
T ss_dssp             CEEEEEEEEEECSTTHHHHHHHHHHHHTCCCCEEEEEECSSTTEEEEEEEEEEC--HHHHHHHHHHHHH
T ss_pred             ceEEEEEEEEeCCCcHHHHHHHHHHHCCCcEEEEEEEecCCCCEEEEEEEEecc--HHHHHHHHHHhcC
Confidence            468999999999999999999999999999999888654445776777777632  1234445555444

>2fgc_A Acetolactate synthase, small subunit; regulatory subunit, structural genomi protein structure initiative; 2.30A {Thermotoga maritima} SCOP: d.58.18.6 d.58.18.6

Probab=97.18  E-value=0.00095  Score=59.66  Aligned_cols=68  Identities=21%  Similarity=0.184  Sum_probs=53.2

Q ss_pred             cccEEEEEEcCCccchHHHHHHHHHhcCCeEeEeeeeccCCCCeEEEEEEEEeCCCCCCHHHHHHHHHHH
Q 021895           40 LTHGIHVFHCPDEVGIVAKLSECIASRGGNILAADVFVPEKKNVFYSRSEFIFDPIKWPREQMDEDFFKL  109 (306)
Q Consensus        40 ~~k~ILTViGpDRpGIVAaVS~~LAe~G~NIlD~sQ~id~l~G~FfMrmeVdv~~~~~~~eeLreaL~~l  109 (306)
                      .|++.|++.-.|+||..++|++.++++|+||..+......+.|.-.|.+.++-++  ...+++...+.++
T Consensus        27 ~m~~~LsVlVeN~pGvLaRItglfsrRG~NI~SLtV~~ted~gisRitIvV~g~e--~~ieqL~kQL~KL   94 (193)
T 2fgc_A           27 IREHLVSMLVHNKPGVMRKVANLFARRGFNISSITVGESETPGLSRLVIMVKGDD--KTIEQIEKQAYKL   94 (193)
T ss_dssp             CEEEEEEEEEECCTTHHHHHHHHHHTTTCEEEEEEEEECSSTTEEEEEEEEEECT--THHHHHHHHHTTS
T ss_pred             ceEEEEEEEECCCChHHHHHHHHHHHCCceEEEEEeeccCCCCEEEEEEEEECCH--HHHHHHHHHhcCc
Confidence            4789999999999999999999999999999998886444456666666676432  3467777766654

>2dt9_A Aspartokinase; protein-ligand complex, regulatory subunit, transferase; 2.15A {Thermus thermophilus} PDB: 2zho_A

Probab=96.95  E-value=0.0074  Score=50.91  Aligned_cols=108  Identities=15%  Similarity=0.025  Sum_probs=73.7

Q ss_pred             CcccEEEEEEc-CCccchHHHHHHHHHhcCCeEeEeeeeccC-CCCeEEEEEEEEeCCCCCCHHHHHHHHHHHHhhhhcc
Q 021895           39 TLTHGIHVFHC-PDEVGIVAKLSECIASRGGNILAADVFVPE-KKNVFYSRSEFIFDPIKWPREQMDEDFFKLSKMFNAM  116 (306)
Q Consensus        39 ~~~k~ILTViG-pDRpGIVAaVS~~LAe~G~NIlD~sQ~id~-l~G~FfMrmeVdv~~~~~~~eeLreaL~~la~elgl~  116 (306)
                      ...-..|++.| +|++|+.++|.+.|+++|+||.-+.|.... +.|...+.+.++-    .+.++..+.|+++.++++. 
T Consensus        13 ~~~~a~Itv~g~~~~~G~~a~if~~La~~~InVd~I~q~~~~~~~g~~~isf~V~~----~d~~~a~~~L~~~~~~~~~-   87 (167)
T 2dt9_A           13 DLDHAQIGLIGIPDQPGIAAKVFQALAERGIAVDMIIQGVPGHDPSRQQMAFTVKK----DFAQEALEALEPVLAEIGG-   87 (167)
T ss_dssp             ECSEEEEEEEEEECSTTHHHHHHHHHHHHTCCCSCEEBCCCCSCTTEEEEEEEEEG----GGHHHHHHHHHHHHHHHCC-
T ss_pred             eCCEEEEEEecCCCCCCHHHHHHHHHHHcCCcEEEEEcCCCCCCCCceEEEEEEeh----HHHHHHHHHHHHHHHHhCC-
Confidence            34557888988 899999999999999999999999985321 2356666666652    2456677888887777763 


Q ss_pred             cceeeecCCCCCceEEEEEeC---CcchHHHHHHhhhcCCCC
Q 021895          117 RSVVRVPDIDPKYKVAVLASK---QEHCLVDFLYGWQEGKLP  155 (306)
Q Consensus       117 ~~~~rl~~~~~~~riavl~S~---~g~~L~~ll~~~~~g~l~  155 (306)
                        ..++  .+.--+|.+.+.+   ....+..++.++.+..++
T Consensus        88 --~v~~--~~~~a~vsvVG~gm~~~~Gv~a~~f~aL~~~~In  125 (167)
T 2dt9_A           88 --EAIL--RPDIAKVSIVGVGLASTPEVPAKMFQAVASTGAN  125 (167)
T ss_dssp             --EEEE--ECSEEEEEEEESSGGGSTHHHHHHHHHHHHTTCC
T ss_pred             --cEEE--eCCEEEEEEECCCcccCcCHHHHHHHHHHHCCCC
Confidence              2333  3456789999987   222345555555444333

>2jhe_A Transcription regulator TYRR; aromatic hydrocarbons catabolism, TYRR protei nucleotide-binding, transcription regulation, activator; HET: PG4; 2.30A {Escherichia coli}

Probab=96.51  E-value=0.0035  Score=51.06  Aligned_cols=33  Identities=18%  Similarity=0.373  Sum_probs=30.9

Q ss_pred             EEEEcCCccchHHHHHHHHHhcCCeEeEeeeec
Q 021895           45 HVFHCPDEVGIVAKLSECIASRGGNILAADVFV   77 (306)
Q Consensus        45 LTViGpDRpGIVAaVS~~LAe~G~NIlD~sQ~i   77 (306)
                      |.|.|-||+|+++.|++.|+++++||..++...
T Consensus         3 ~~v~~~dr~g~l~~i~~~l~~~~~ni~~~~~~~   35 (190)
T 2jhe_A            3 LEVFCEDRLGLTRELLDLLVLRGIDLRGIEIDP   35 (190)
T ss_dssp             EEEEECSCTTHHHHHHHHHHHTTCCEEEEEEET
T ss_pred             EEEEEecCCcHHHHHHHHHHHcCCCeEEEEEec
Confidence            678999999999999999999999999999953

>2f06_A Conserved hypothetical protein; structural genomics hypothetical protein, PSI, protein struc initiative; HET: MSE HIS; 2.10A {Bacteroides thetaiotaomicron} SCOP: d.58.18.11 d.58.18.11

Probab=96.37  E-value=0.0091  Score=48.67  Aligned_cols=58  Identities=19%  Similarity=0.173  Sum_probs=41.8

Q ss_pred             EEEEEEcCCccchHHHHHHHHHhcCCeEeEeeeeccCCCCeEEEEEEEEeCCCCCCHHHHHHHHHH
Q 021895           43 GIHVFHCPDEVGIVAKLSECIASRGGNILAADVFVPEKKNVFYSRSEFIFDPIKWPREQMDEDFFK  108 (306)
Q Consensus        43 ~ILTViGpDRpGIVAaVS~~LAe~G~NIlD~sQ~id~l~G~FfMrmeVdv~~~~~~~eeLreaL~~  108 (306)
                      -++.+.-+|+||.+|++++.|+++|+||..+-.+.  ..+.-.+.+.+  +    +.+...+.|.+
T Consensus        73 svv~v~~~d~pGvla~i~~~L~~~~InI~~~~~~~--~~~~~~~~i~~--~----d~~~A~~~L~~  130 (144)
T 2f06_A           73 DVVGISCPNVPGALAKVLGFLSAEGVFIEYMYSFA--NNNVANVVIRP--S----NMDKCIEVLKE  130 (144)
T ss_dssp             EEEEEEEESSTTHHHHHHHHHHHTTCCEEEEEEEE--ETTEEEEEEEE--S----CHHHHHHHHHH
T ss_pred             eEEEEEeCCCCcHHHHHHHHHHHCCCCEEEEEEEc--cCCcEEEEEEe--C----CHHHHHHHHHH
Confidence            36777789999999999999999999998876652  23444444444  2    45666666664

>1ygy_A PGDH, D-3-phosphoglycerate dehydrogenase; oxidoreductase, serine biosy structural genomics, PSI, protein structure initiative; HET: TAR; 2.30A {Mycobacterium tuberculosis} SCOP: c.2.1.4 c.23.12.1 d.58.18.1 d.81.2.2 PDB: 3dc2_A* 3ddn_A*

Probab=96.26  E-value=0.0061  Score=60.60  Aligned_cols=65  Identities=17%  Similarity=0.116  Sum_probs=50.1

Q ss_pred             ccEEEEEEcCCccchHHHHHHHHHhcCCeEeEeeeeccCCCCeEEEEEEEEeCCCCCCHHHHHHHHHHH
Q 021895           41 THGIHVFHCPDEVGIVAKLSECIASRGGNILAADVFVPEKKNVFYSRSEFIFDPIKWPREQMDEDFFKL  109 (306)
Q Consensus        41 ~k~ILTViGpDRpGIVAaVS~~LAe~G~NIlD~sQ~id~l~G~FfMrmeVdv~~~~~~~eeLreaL~~l  109 (306)
                      ..+.|.+.-+|+||+|+.|++.|.++|+||.+++-.-...+|.-.|++++|-+   .+ +++.+.+.++
T Consensus       453 ~~~~l~v~~~D~PG~I~~v~~~Lg~~~INIa~m~v~r~~~~~~a~~~i~vd~~---~~-~~~l~~l~~~  517 (529)
T 1ygy_A          453 QGINLIIHYVDRPGALGKIGTLLGTAGVNIQAAQLSEDAEGPGATILLRLDQD---VP-DDVRTAIAAA  517 (529)
T ss_dssp             CSEEEEEEESCCTTHHHHHHHHHHHTTCCEEEEEEEECSSSSCEEEEEEESSC---CC-HHHHHHHHHH
T ss_pred             CccEEEEEcCCCCchHHHHHHHHHhcCCCeeeEEEecCCCCCEEEEEEEECCC---CC-HHHHHHHhcC
Confidence            45677788899999999999999999999999877655556778888888743   23 4555556543

>1sc6_A PGDH, D-3-phosphoglycerate dehydrogenase; allosteric regulation phosphoglycerate dehydrogenase PGDH, oxidoreductase; HET: NAD; 2.09A {Escherichia coli} SCOP: c.2.1.4 c.23.12.1 d.58.18.1 PDB: 1psd_A* 1yba_A* 2p9c_A* 2p9e_A* 2pa3_A* 2p9g_A*

Probab=96.22  E-value=0.015  Score=56.38  Aligned_cols=75  Identities=15%  Similarity=0.244  Sum_probs=51.5

Q ss_pred             hhhhheeecc--cccccCCCCCcccCCCCCCcccEEEEEEcCCccchHHHHHHHHHhcCCeEeEeeeeccCCCCeEEEEE
Q 021895           11 LQQVVKFTNR--SFKSLKFPGEPIESSVSPTLTHGIHVFHCPDEVGIVAKLSECIASRGGNILAADVFVPEKKNVFYSRS   88 (306)
Q Consensus        11 ~~~~~~~~~~--~~~~~~~~~~~~~~~~~p~~~k~ILTViGpDRpGIVAaVS~~LAe~G~NIlD~sQ~id~l~G~FfMrm   88 (306)
                      .+++..|.+.  .-..+.||.-.+.     +.....|.+.-.|+||+|++|++.|+++|+||....-..  .++.-.|++
T Consensus       303 ~~nl~~~l~g~~~~~~vn~p~~~~~-----~~~~~rl~~~h~d~PGvi~~i~~iL~~~~iNIa~m~~~r--~g~~A~~vi  375 (404)
T 1sc6_A          303 AGKLIKYSDNGSTLSAVNFPEVSLP-----LHGGRRLMHIHENRPGVLTALNKIFAEQGVNIAAQYLQT--SAQMGYVVI  375 (404)
T ss_dssp             HHHHHHHHHHCCCTTBSSSCCCCCC-----CCSSEEEEEEEESCTTHHHHHHHHHHHTTCEEEEEEEEE--CSSEEEEEE
T ss_pred             HHHHHHHHcCCCCcceecccccccC-----cCCcceEEEEeCCCCCHHHHHHHHHHHcCCCHHHhhccC--CCCEEEEEE
Confidence            3455555432  2334566653322     113456778889999999999999999999999977653  456777778


Q ss_pred             EEEe
Q 021895           89 EFIF   92 (306)
Q Consensus        89 eVdv   92 (306)
                      ++|-
T Consensus       376 dvD~  379 (404)
T 1sc6_A          376 DIEA  379 (404)
T ss_dssp             EEEC
T ss_pred             EcCC
Confidence            7773

>4go7_X Aspartokinase; transferase; 2.00A {Mycobacterium tuberculosis} PDB: 4go5_X

Probab=95.69  E-value=0.015  Score=51.67  Aligned_cols=112  Identities=15%  Similarity=0.017  Sum_probs=73.5

Q ss_pred             CCCCCCcccEEEEEEc-CCccchHHHHHHHHHhcCCeEeEeeeeccCCCCeEEEEEEEEeCCCCCCHHHHHHHHHHHHhh
Q 021895           34 SSVSPTLTHGIHVFHC-PDEVGIVAKLSECIASRGGNILAADVFVPEKKNVFYSRSEFIFDPIKWPREQMDEDFFKLSKM  112 (306)
Q Consensus        34 ~~~~p~~~k~ILTViG-pDRpGIVAaVS~~LAe~G~NIlD~sQ~id~l~G~FfMrmeVdv~~~~~~~eeLreaL~~la~e  112 (306)
                      +.++-..+-+.||+.| ||+||+.|+|=+.|+++|+||.=+.|...... .....+.|.++.  .+.+...+.++++..+
T Consensus        27 tGIa~~~~~a~Iti~g~~~~pG~aa~IF~~La~~~InVDmI~Qs~s~~~-~~~~~~sftv~~--~d~~~~~~~l~~~~~~  103 (200)
T 4go7_X           27 TGVAHDRSEAKVTIVGLPDIPGYAAKVFRAVADADVNIDMVLQNVSKVE-DGKTDITFTCSR--DVGPAAVEKLDSLRNE  103 (200)
T ss_dssp             EEEEEECSEEEEEEEEEECSTTHHHHHHHHHHHTTCCCCCEECCCCC---CCEEEEEEEEEG--GGHHHHHHHHHTTHHH
T ss_pred             EEEEccCCEEEEEEecCCCCccHHHHHHHHHHHhCcceEEEeecccccc-ccceEEEEecch--hhHHHHHHHHHHHHhh
Confidence            3344455567788876 99999999999999999999999998653222 223355566654  2567777888888777


Q ss_pred             hhcccceeeecCCCCCceEEEEEeCCcc---hHHHHHHhhhcC
Q 021895          113 FNAMRSVVRVPDIDPKYKVAVLASKQEH---CLVDFLYGWQEG  152 (306)
Q Consensus       113 lgl~~~~~rl~~~~~~~riavl~S~~g~---~L~~ll~~~~~g  152 (306)
                      ++...    +.-.+.--||.+.+.|=-.   -...+..++.+.
T Consensus       104 ~~~~~----v~~~~~iakVSvVG~GM~~~~GVaak~F~aLa~~  142 (200)
T 4go7_X          104 IGFSQ----LLYDDHIGKVSLIGAGMRSHPGVTATFCEALAAV  142 (200)
T ss_dssp             HCCSE----EEEECCEEEEEEEEESCTTCHHHHHHHHHHHHHT
T ss_pred             hceee----EEEecCeeeeeeeccccccCCCcHHHHHHHHHHC
Confidence            76321    2223345689999988531   233444554444

>3s1t_A Aspartokinase; ACT domain, threonine binding, regulatory domain of aspartok transferase; 1.63A {Mycobacterium tuberculosis}

Probab=95.13  E-value=0.12  Score=44.56  Aligned_cols=104  Identities=14%  Similarity=-0.021  Sum_probs=67.9

Q ss_pred             ccEEEEEEc-CCccchHHHHHHHHHhcCCeEeEeeeeccC-CCCeEEEEEEEEeCCCCCCHHHHHHHHHHHHhhhhcccc
Q 021895           41 THGIHVFHC-PDEVGIVAKLSECIASRGGNILAADVFVPE-KKNVFYSRSEFIFDPIKWPREQMDEDFFKLSKMFNAMRS  118 (306)
Q Consensus        41 ~k~ILTViG-pDRpGIVAaVS~~LAe~G~NIlD~sQ~id~-l~G~FfMrmeVdv~~~~~~~eeLreaL~~la~elgl~~~  118 (306)
                      +-..||+.| +|++|+.++|-+.|+++|+||.-+.|.... +.|.-.+.+.++  .  .+.+...+.|+++.++++..  
T Consensus        15 ~~~~Iti~~~~~~~G~~a~If~~La~~~I~vd~I~q~~s~~~~g~~~isftv~--~--~~~~~a~~~L~~~~~el~~~--   88 (181)
T 3s1t_A           15 SEAKVTIVGLPDIPGYAAKVFRAVADADVNIDMVLQNVSKVEDGKTDITFTCS--R--DVGPAAVEKLDSLRNEIGFS--   88 (181)
T ss_dssp             SEEEEEEEEEESSTTHHHHHHHHHHHTTCCCCCEEECCCCTTTCEEEEEEEEE--T--TTHHHHHHHHHHTHHHHCCS--
T ss_pred             CEEEEEEecCCCCcCHHHHHHHHHHHcCCcEEEEEecCCcccCCccEEEEEEe--h--hHHHHHHHHHHHHHHhcCcc--
Confidence            345566654 799999999999999999999999886542 145545555554  2  25667777888877777532  


Q ss_pred             eeeecCCCCCceEEEEEeCCc---chHHHHHHhhhcC
Q 021895          119 VVRVPDIDPKYKVAVLASKQE---HCLVDFLYGWQEG  152 (306)
Q Consensus       119 ~~rl~~~~~~~riavl~S~~g---~~L~~ll~~~~~g  152 (306)
                      .+++  .+.--+|++.+.+=-   ..+..++.++.+.
T Consensus        89 ~v~~--~~~va~VsvVG~gm~~~~Gvaa~~f~aLa~~  123 (181)
T 3s1t_A           89 QLLY--DDHIGKVSLIGAGMRSHPGVTATFCEALAAV  123 (181)
T ss_dssp             EEEE--ESCEEEEEEEEECCTTCHHHHHHHHHHHHHT
T ss_pred             eEEE--eCCEEEEEEEecccccCchHHHHHHHHHHHC
Confidence            1222  335568999888642   2334455555444

>4gmf_A Yersiniabactin biosynthetic protein YBTU; rossmann fold, NADPH dependent thiazoline reductase, oxidore; HET: EPE; 1.85A {Yersinia enterocolitica subsp} PDB: 4gmg_A*

Probab=94.52  E-value=0.023  Score=54.27  Aligned_cols=71  Identities=15%  Similarity=0.297  Sum_probs=43.8

Q ss_pred             CCCCCceEEEEEeCCcchHHHHHHhhhcCCCCeEEEEEeeCCCCCCChhHHHHHHhCCCCEEEeCCCCCChHHHHHHHhc
Q 021895          124 DIDPKYKVAVLASKQEHCLVDFLYGWQEGKLPVEITCVISNHDRGPNSHVIRFLERHGIPYHYLCAKENEREEELLELVQ  203 (306)
Q Consensus       124 ~~~~~~riavl~S~~g~~L~~ll~~~~~g~l~~~I~~Visn~~~~~~~~~~~~A~~~gIp~~~~~~k~~~~e~e~~~~v~  203 (306)
                      ...+|.||+|.++|-|..   -+.++.+-.-.+++++|++..    .....++|+++|||++. +     .|    +++.
T Consensus         3 ~~~~~~rv~VvG~G~g~~---h~~a~~~~~~~~elvav~~~~----~~~a~~~a~~~gv~~~~-~-----~~----~l~~   65 (372)
T 4gmf_A            3 SASPKQRVLIVGAKFGEM---YLNAFMQPPEGLELVGLLAQG----SARSRELAHAFGIPLYT-S-----PE----QITG   65 (372)
T ss_dssp             ----CEEEEEECSTTTHH---HHHTTSSCCTTEEEEEEECCS----SHHHHHHHHHTTCCEES-S-----GG----GCCS
T ss_pred             CCCCCCEEEEEehHHHHH---HHHHHHhCCCCeEEEEEECCC----HHHHHHHHHHhCCCEEC-C-----HH----HHhc
Confidence            456789999999987632   233333221137999988754    24578899999999632 1     12    2334


Q ss_pred             CCcEEEEe
Q 021895          204 NTDFLVLA  211 (306)
Q Consensus       204 ~~D~vVlA  211 (306)
                      ++|+++++
T Consensus        66 ~~D~v~i~   73 (372)
T 4gmf_A           66 MPDIACIV   73 (372)
T ss_dssp             CCSEEEEC
T ss_pred             CCCEEEEE
Confidence            78888776

>2dtj_A Aspartokinase; protein-ligand complex, regulatory subunit, transferase; HET: CIT; 1.58A {Corynebacterium glutamicum} PDB: 3aaw_B* 3ab2_B 3ab4_B*

Probab=94.44  E-value=0.13  Score=43.89  Aligned_cols=105  Identities=16%  Similarity=0.015  Sum_probs=65.2

Q ss_pred             ccEEEEEE-cCCccchHHHHHHHHHhcCCeEeEeeeeccC-CCC--eEEEEEEEEeCCCCCCHHHHHHHHHHHHhhhhcc
Q 021895           41 THGIHVFH-CPDEVGIVAKLSECIASRGGNILAADVFVPE-KKN--VFYSRSEFIFDPIKWPREQMDEDFFKLSKMFNAM  116 (306)
Q Consensus        41 ~k~ILTVi-GpDRpGIVAaVS~~LAe~G~NIlD~sQ~id~-l~G--~FfMrmeVdv~~~~~~~eeLreaL~~la~elgl~  116 (306)
                      +-..|++. .+|++|+.++|.+.|+++|+||.-+.|.... ..|  .|.  +.+..+    +.++..+.|+++.++++..
T Consensus        14 ~~~~Itv~~~~~~~G~~a~if~~La~~~InId~i~~s~~~~~~~~~~is--f~v~~~----d~~~a~~~l~~~~~~~~~~   87 (178)
T 2dtj_A           14 SEAKVTVLGISDKPGEAAKVFRALADAEINIDMVLQNVSSVEDGTTDIT--FTCPRS----DGRRAMEILKKLQVQGNWT   87 (178)
T ss_dssp             SEEEEEEEEEECSTTHHHHHHHHHHHTTCCCCEEEECCCCTTTCEEEEE--EEEEHH----HHHHHHHHHHTTTTTTTCS
T ss_pred             CEEEEEEecCCCCccHHHHHHHHHHHcCCCEEEEEcCCCCCCCCceEEE--EEEccc----cHHHHHHHHHHHHHhcCCC
Confidence            44667774 5999999999999999999999999885321 122  233  223211    3455667777666666531


Q ss_pred             cceeeecCCCCCceEEEEEeCCc---chHHHHHHhhhcCCCC
Q 021895          117 RSVVRVPDIDPKYKVAVLASKQE---HCLVDFLYGWQEGKLP  155 (306)
Q Consensus       117 ~~~~rl~~~~~~~riavl~S~~g---~~L~~ll~~~~~g~l~  155 (306)
                        .  +.-.+.--+|.+.+++-.   .-+..++.++.+..++
T Consensus        88 --~--v~~~~~~a~VsvVG~gm~~~~Gv~arif~aLa~~~In  125 (178)
T 2dtj_A           88 --N--VLYDDQVGKVSLVGAGMKSHPGVTAEFMEALRDVNVN  125 (178)
T ss_dssp             --E--EEEESCEEEEEEEEECCTTCHHHHHHHHHHHHHTTCC
T ss_pred             --e--EEEeCCeEEEEEEcCCcccCccHHHHHHHHHHHCCCC
Confidence              1  222345678899988642   2344556655554443

>2re1_A Aspartokinase, alpha and beta subunits; structural genomics, protein structure initiative, midwest center for structural genomics; 2.75A {Neisseria meningitidis MC58}

Probab=92.46  E-value=0.41  Score=40.17  Aligned_cols=62  Identities=23%  Similarity=0.087  Sum_probs=45.6

Q ss_pred             cccEEEEEEcCC---ccchHHHHHHHHHhcCCeEeEeeeeccCCCCeEEEEEEEEeCCCCCCHHHHHHHHHHHHhhhh
Q 021895           40 LTHGIHVFHCPD---EVGIVAKLSECIASRGGNILAADVFVPEKKNVFYSRSEFIFDPIKWPREQMDEDFFKLSKMFN  114 (306)
Q Consensus        40 ~~k~ILTViGpD---RpGIVAaVS~~LAe~G~NIlD~sQ~id~l~G~FfMrmeVdv~~~~~~~eeLreaL~~la~elg  114 (306)
                      ..-++++++|.+   ++|+.+++.+.|+++|+||.-++.  .  ..  .+.+.++       .++..++++.+-++|+
T Consensus       101 ~~~a~vsvvG~~m~~~~Gv~a~i~~aL~~~~InI~~ist--s--e~--~is~vv~-------~~d~~~av~~Lh~~f~  165 (167)
T 2re1_A          101 DTVCKVSAVGLGMRSHVGVAAKIFRTLAEEGINIQMIST--S--EI--KVSVLID-------EKYMELATRVLHKAFN  165 (167)
T ss_dssp             SSEEEEEEECSSCTTCCCHHHHHHHHHHHTTCCCCEEEE--C--SS--EEEEEEE-------GGGHHHHHHHHHHHTT
T ss_pred             CCEEEEEEECCCcCCCcCHHHHHHHHHHHCCCcEEEEEc--c--cC--EEEEEEe-------HHHHHHHHHHHHHHhc
Confidence            456899999998   999999999999999999998763  1  12  2233343       2445677777777765

>3k5p_A D-3-phosphoglycerate dehydrogenase; niaid, ssgcid, seattle structural genomics center for infect disease, brucellosis; 2.15A {Brucella melitensis biovar abortus}

Probab=92.19  E-value=0.32  Score=47.59  Aligned_cols=62  Identities=16%  Similarity=0.250  Sum_probs=44.5

Q ss_pred             hhhhheee-c-ccccccCCCCCcccCCCCCCcccEEEEEEcCCccchHHHHHHHHHhcCCeEeEeeee
Q 021895           11 LQQVVKFT-N-RSFKSLKFPGEPIESSVSPTLTHGIHVFHCPDEVGIVAKLSECIASRGGNILAADVF   76 (306)
Q Consensus        11 ~~~~~~~~-~-~~~~~~~~~~~~~~~~~~p~~~k~ILTViGpDRpGIVAaVS~~LAe~G~NIlD~sQ~   76 (306)
                      .+++..|. + ..-.+..||.-    +++.......|+++=.+.||++++|++.|+++|+||.+..-.
T Consensus       314 ~~nl~~~l~~g~~~~~Vn~p~~----~~~~~~~~~r~~~~h~n~p~~~~~i~~~~~~~~~ni~~~~~~  377 (416)
T 3k5p_A          314 TRKLVEYSDVGSTVGAVNFPQV----QLPPRPTGTRFMHVHENRPGILNSLMNVFSHHHINIASQFLQ  377 (416)
T ss_dssp             HHHHHHHHHHCCCTTBSSSCCC----CCCCCSSSEEEEEEECCCTTHHHHHHHHHHHTTCCEEEEEEE
T ss_pred             HHHHHHHHhhCCCCceeeCCCc----CCCCCCCceEEEEEecCCccHHHHHHHHHHHcCCCHHHHhcc
Confidence            34555554 2 22345667653    233344567889999999999999999999999999996653

>3mtj_A Homoserine dehydrogenase; rossmann-fold, PSI, MCSG, structural genomics, midwest cente structural genomics; 2.15A {Thiobacillus denitrificans}

Probab=91.77  E-value=0.36  Score=47.51  Aligned_cols=69  Identities=13%  Similarity=0.051  Sum_probs=48.3

Q ss_pred             cccEEEEEEcCCccchHHHHHHHHHhcCCeEeEeeeeccCCCCeEEEEEEEEeCCCCCCHHHHHHHHHHHHh
Q 021895           40 LTHGIHVFHCPDEVGIVAKLSECIASRGGNILAADVFVPEKKNVFYSRSEFIFDPIKWPREQMDEDFFKLSK  111 (306)
Q Consensus        40 ~~k~ILTViGpDRpGIVAaVS~~LAe~G~NIlD~sQ~id~l~G~FfMrmeVdv~~~~~~~eeLreaL~~la~  111 (306)
                      ..+|-|.+...|+||+.++|++.++++|++|..+-|......+.- ..+.+-..  .....+++++++++.+
T Consensus       357 ~~~yy~r~~~~d~~gvl~~i~~~~~~~~isi~~~~q~~~~~~~~~-~~~v~~th--~~~e~~~~~~~~~~~~  425 (444)
T 3mtj_A          357 RTAYYLRLRAFDRPGVLADITRILADSSISIDAMVQKEPAEGEEQ-VDIILLTH--VTLEKNVNAAIAKIEA  425 (444)
T ss_dssp             EEEEEEEEEEC-CCHHHHHHHHHHHHTTCCEEEEEECC------C-EEEEEEEC--SEEHHHHHHHHHHHTT
T ss_pred             ceeeEEEEEecCcccHHHHHHHHHHhcCCceeEEeecccccCCCC-ceEEEEec--cCCHHHHHHHHHHHhc
Confidence            466899999999999999999999999999999999632111111 22333222  3467888988888764

>2dtj_A Aspartokinase; protein-ligand complex, regulatory subunit, transferase; HET: CIT; 1.58A {Corynebacterium glutamicum} PDB: 3aaw_B* 3ab2_B 3ab4_B*

Probab=91.51  E-value=0.28  Score=41.74  Aligned_cols=64  Identities=14%  Similarity=0.109  Sum_probs=47.5

Q ss_pred             CcccEEEEEEcC---CccchHHHHHHHHHhcCCeEeEeeeeccCCCCeEEEEEEEEeCCCCCCHHHHHHHHHHHHhhhhc
Q 021895           39 TLTHGIHVFHCP---DEVGIVAKLSECIASRGGNILAADVFVPEKKNVFYSRSEFIFDPIKWPREQMDEDFFKLSKMFNA  115 (306)
Q Consensus        39 ~~~k~ILTViGp---DRpGIVAaVS~~LAe~G~NIlD~sQ~id~l~G~FfMrmeVdv~~~~~~~eeLreaL~~la~elgl  115 (306)
                      ...-++|+++|.   |++|+.+++.+.|+++|+||.-++.  . ...   +.+.++       .++..++++.+-+.|.+
T Consensus        92 ~~~~a~VsvVG~gm~~~~Gv~arif~aLa~~~InI~~ist--S-e~~---Is~vV~-------~~d~~~Av~~Lh~~F~l  158 (178)
T 2dtj_A           92 DDQVGKVSLVGAGMKSHPGVTAEFMEALRDVNVNIELIST--S-EIR---ISVLIR-------EDDLDAAARALHEQFQL  158 (178)
T ss_dssp             ESCEEEEEEEEECCTTCHHHHHHHHHHHHHTTCCCCEEEE--E-TTE---EEEEEE-------GGGHHHHHHHHHHHHTC
T ss_pred             eCCeEEEEEEcCCcccCccHHHHHHHHHHHCCCCEEEEEc--C-CCe---EEEEEe-------HHHHHHHHHHHHHHHcc
Confidence            345688999997   8999999999999999999988763  1 122   222232       35677888888888874

>3ab4_A Aspartokinase; aspartate kinase, concerted inhibition, alternative initiati amino-acid biosynthesis, ATP-binding; HET: LYS; 2.47A {Corynebacterium glutamicum} PDB: 3aaw_A* 3ab2_A

Probab=91.39  E-value=1.8  Score=41.61  Aligned_cols=105  Identities=16%  Similarity=-0.024  Sum_probs=67.4

Q ss_pred             EEEEEEc-CCccchHHHHHHHHHhcCCeEeEeeeeccC-CCCeEEEEEEEEeCCCCCCHHHHHHHHHHHHhhhhccccee
Q 021895           43 GIHVFHC-PDEVGIVAKLSECIASRGGNILAADVFVPE-KKNVFYSRSEFIFDPIKWPREQMDEDFFKLSKMFNAMRSVV  120 (306)
Q Consensus        43 ~ILTViG-pDRpGIVAaVS~~LAe~G~NIlD~sQ~id~-l~G~FfMrmeVdv~~~~~~~eeLreaL~~la~elgl~~~~~  120 (306)
                      ..|++.| +|++|+.++|-+.|+++|+||.-+.|.... ..|...+.+.++-    .+.+...+.|+++.++++..  ..
T Consensus       265 ~~i~v~~~~~~~g~~~~If~~La~~~I~vd~I~q~~s~~~~g~~~isf~v~~----~~~~~a~~~l~~~~~~~~~~--~v  338 (421)
T 3ab4_A          265 AKVTVLGISDKPGEAAKVFRALADAEINIDMVLQNVFSVEDGTTDITFTCPR----SDGRRAMEILKKLQVQGNWT--NV  338 (421)
T ss_dssp             EEEEEEEEESSTTHHHHHHHHHHHTTCCCEEEEECCCC--CCEEEEEEEEET----TTHHHHHHHHHHHHTTTTCS--EE
T ss_pred             EEEEEeccCCcccHHHHHHHHHHHcCCcEEEEEccCccccCCcceEEEEEec----hhHHHHHHHHHHHHHHcCCc--eE
Confidence            4567774 899999999999999999999999883221 1355555666652    25666777888877777631  12


Q ss_pred             eecCCCCCceEEEEEeCCc---chHHHHHHhhhcCCCC
Q 021895          121 RVPDIDPKYKVAVLASKQE---HCLVDFLYGWQEGKLP  155 (306)
Q Consensus       121 rl~~~~~~~riavl~S~~g---~~L~~ll~~~~~g~l~  155 (306)
                      .+  .+.--+|.|.+.+-.   ..+..++.++.+..++
T Consensus       339 ~~--~~~~a~vsvVG~gm~~~~Gv~a~~f~aL~~~~In  374 (421)
T 3ab4_A          339 LY--DDQVGKVSLVGAGMKSHPGVTAEFMEALRDVNVN  374 (421)
T ss_dssp             EE--ECCEEEEEEECGGGTSCTTHHHHHHHHHHHTTCC
T ss_pred             EE--eCCeEEEEEEccCcccCccHHHHHHHHHHHCCCC
Confidence            22  334567888887521   2344555555444333

>2dt9_A Aspartokinase; protein-ligand complex, regulatory subunit, transferase; 2.15A {Thermus thermophilus} PDB: 2zho_A

Probab=89.90  E-value=1.1  Score=37.43  Aligned_cols=63  Identities=16%  Similarity=0.094  Sum_probs=45.5

Q ss_pred             CcccEEEEEEcCC---ccchHHHHHHHHHhcCCeEeEeeeeccCCCCeEEEEEEEEeCCCCCCHHHHHHHHHHHHhhhh
Q 021895           39 TLTHGIHVFHCPD---EVGIVAKLSECIASRGGNILAADVFVPEKKNVFYSRSEFIFDPIKWPREQMDEDFFKLSKMFN  114 (306)
Q Consensus        39 ~~~k~ILTViGpD---RpGIVAaVS~~LAe~G~NIlD~sQ~id~l~G~FfMrmeVdv~~~~~~~eeLreaL~~la~elg  114 (306)
                      +..-++++++|.+   +||+.+++.+.|++.|+||.-++.   .  .. .+.+.|+       .++..++++.+-+.|.
T Consensus        92 ~~~~a~vsvVG~gm~~~~Gv~a~~f~aL~~~~InI~~is~---S--e~-~is~vv~-------~~d~~~Av~~Lh~~f~  157 (167)
T 2dt9_A           92 RPDIAKVSIVGVGLASTPEVPAKMFQAVASTGANIEMIAT---S--EV-RISVIIP-------AEYAEAALRAVHQAFE  157 (167)
T ss_dssp             ECSEEEEEEEESSGGGSTHHHHHHHHHHHHTTCCCCEEEE---C--SS-EEEEEEE-------GGGHHHHHHHHHHHTC
T ss_pred             eCCEEEEEEECCCcccCcCHHHHHHHHHHHCCCCEEEEEc---c--CC-EEEEEEe-------HHHHHHHHHHHHHHHc
Confidence            3455789999987   999999999999999999966652   1  22 4445454       2456667776666665

>3rjz_A N-type ATP pyrophosphatase superfamily; structural genomics, PSI-biology, northeast structural genom consortium, NESG, alpha-beta protein; 2.30A {Pyrococcus furiosus} SCOP: c.26.2.1 PDB: 3h7e_A 3rk0_A* 3rk1_A* 1ru8_A 2d13_A

Probab=89.79  E-value=0.88  Score=41.30  Aligned_cols=80  Identities=15%  Similarity=0.134  Sum_probs=48.9

Q ss_pred             CceEEEEEeCCcchHHHHHHhhhcCCCCeEEEEEeeCCCCC---------CChhHHHHHHhCCCCEEEeCCCCC-Ch-HH
Q 021895          128 KYKVAVLASKQEHCLVDFLYGWQEGKLPVEITCVISNHDRG---------PNSHVIRFLERHGIPYHYLCAKEN-ER-EE  196 (306)
Q Consensus       128 ~~riavl~S~~g~~L~~ll~~~~~g~l~~~I~~Visn~~~~---------~~~~~~~~A~~~gIp~~~~~~k~~-~~-e~  196 (306)
                      .+|++++.||.--...++....+.|   .+|+++++..+..         .-..+...|+..|||.++++.++. +. .+
T Consensus         4 ~MKvvvl~SGGkDSs~al~~l~~~G---~eV~~L~~~~~~~~~s~~~h~~~~e~a~~~A~~LGIpl~~v~~~g~~~~e~e   80 (237)
T 3rjz_A            4 LADVAVLYSGGKDSNYALYWAIKNR---FSVKFLVTMVSENEESYMYHTINANLTDLQARALGIPLVKGFTQGEKEKEVE   80 (237)
T ss_dssp             CSEEEEECCSSHHHHHHHHHHHHTT---CEEEEEEEEECC--------CCSSSHHHHHHHHHTCCEEEEEC------CHH
T ss_pred             CCEEEEEecCcHHHHHHHHHHHHcC---CeEEEEEEEcCCCCCccccCCccHHHHHHHHHHcCCCEEEEECCCCchHHHH
Confidence            3799999999753333444445556   6888876443211         123567889999999999885432 11 25


Q ss_pred             HHHHHhc--CCcEEEE
Q 021895          197 ELLELVQ--NTDFLVL  210 (306)
Q Consensus       197 e~~~~v~--~~D~vVl  210 (306)
                      ++.+.++  .+|-+|.
T Consensus        81 ~l~~~l~~~~i~~vv~   96 (237)
T 3rjz_A           81 DLKRVLSGLKIQGIVA   96 (237)
T ss_dssp             HHHHHHTTSCCSEEEC
T ss_pred             HHHHHHHhcCCcEEEE
Confidence            6667776  4666654

>3l76_A Aspartokinase; allostery, ACT domains, kinase transferase; HET: LYS; 2.54A {Synechocystis}

Probab=86.91  E-value=0.62  Score=47.27  Aligned_cols=94  Identities=14%  Similarity=0.055  Sum_probs=61.7

Q ss_pred             CCcccEEEEEEc-CCccchHHHHHHHHHhcCCeEeEeeeeccCC--CCeEEEEEEEEeCCCCCCHHHHHHHHHHHHhhhh
Q 021895           38 PTLTHGIHVFHC-PDEVGIVAKLSECIASRGGNILAADVFVPEK--KNVFYSRSEFIFDPIKWPREQMDEDFFKLSKMFN  114 (306)
Q Consensus        38 p~~~k~ILTViG-pDRpGIVAaVS~~LAe~G~NIlD~sQ~id~l--~G~FfMrmeVdv~~~~~~~eeLreaL~~la~elg  114 (306)
                      -......||+.+ ||++|+.++|=+.|+++|+|+.=+.|.....  .|.+.--+-|.++.  .+.+...+.|+++.++++
T Consensus       440 ~~~~~a~i~i~~~~~~~g~~~~if~~La~~~I~vDmI~q~~~~~~~~g~~~~~isftv~~--~d~~~a~~~l~~~~~~~~  517 (600)
T 3l76_A          440 LDQDQAQIAIRHVPDRPGMAAQLFTALAEANISVDMIIQSQRCRINQGTPCRDIAFMVAE--GDSSQAEAILQPLIKDWL  517 (600)
T ss_dssp             EECSEEEEEEEEEESSTTHHHHHHHHHHHTTCCCCEEEEEEECCCSSSSCEEEEEEEEEH--HHHHHHHHHHHHHTTTST
T ss_pred             eeCCEEEEEEecCCCCccHHHHHHHHHHHcCCcEEEEEecccccccCCCccceEEEEEeH--HHHHHHHHHHHHHHHhcC
Confidence            344556777766 9999999999999999999998888865421  25332233444433  245666777777776766


Q ss_pred             cccceeeecCCCCCceEEEEEeC
Q 021895          115 AMRSVVRVPDIDPKYKVAVLASK  137 (306)
Q Consensus       115 l~~~~~rl~~~~~~~riavl~S~  137 (306)
                      ...  +  .-.+.--||++.+.|
T Consensus       518 ~~~--v--~~~~~~akVSiVG~G  536 (600)
T 3l76_A          518 DAA--I--VVNKAIAKVSIVGSG  536 (600)
T ss_dssp             TCE--E--EEECCEEEEEEECGG
T ss_pred             Cce--E--EEeCCeEEEEEECcc
Confidence            311  2  223455688888765

>1zhv_A Hypothetical protein ATU0741; NESG, ATR8, structural genomics, PSI, protein struc initiative; 1.50A {Agrobacterium tumefaciens str} SCOP: d.58.18.8 d.58.18.8

Probab=85.43  E-value=0.83  Score=38.27  Aligned_cols=35  Identities=29%  Similarity=0.464  Sum_probs=31.2

Q ss_pred             EEEEEEcC---CccchHHHHHHHHHhcCCeEeEeeeec
Q 021895           43 GIHVFHCP---DEVGIVAKLSECIASRGGNILAADVFV   77 (306)
Q Consensus        43 ~ILTViGp---DRpGIVAaVS~~LAe~G~NIlD~sQ~i   77 (306)
                      ..|++.|+   |-+||+|+|++.|+++|+-|--++.|.
T Consensus        63 r~i~v~~~l~~~~vGilA~is~pLA~agIsif~iSty~  100 (134)
T 1zhv_A           63 SCFKFQGPFAFDETGIVLSVISPLSTNGIGIFVVSTFD  100 (134)
T ss_dssp             EEEEECSCCCCSSCCHHHHHHHHHHTTTCCCEEEECSS
T ss_pred             EEEEEecCCCccHHHHHHHHHHHHHhCCCCeEEEEecc
Confidence            37888888   999999999999999999999888874

>4had_A Probable oxidoreductase protein; structural genomics, protein structure initiative, nysgrc, PSI-biology; 2.00A {Rhizobium etli}

Probab=84.89  E-value=1.1  Score=40.77  Aligned_cols=71  Identities=11%  Similarity=0.209  Sum_probs=44.5

Q ss_pred             CCCceEEEEEeCCc---chHHHHHHhhhcCCCCeEEEEEeeCCCCCCChhHHHHHHhCCCCEEEeCCCCCChHHHHHHHh
Q 021895          126 DPKYKVAVLASKQE---HCLVDFLYGWQEGKLPVEITCVISNHDRGPNSHVIRFLERHGIPYHYLCAKENEREEELLELV  202 (306)
Q Consensus       126 ~~~~riavl~S~~g---~~L~~ll~~~~~g~l~~~I~~Visn~~~~~~~~~~~~A~~~gIp~~~~~~k~~~~e~e~~~~v  202 (306)
                      ..+.||+|++.|.-   |.+.++ ..  .+  .++|++|.+..    ...+.++|+++|+|-.+-+     . +++++- 
T Consensus        21 ~~mirigiIG~G~ig~~~~~~~~-~~--~~--~~~lvav~d~~----~~~a~~~a~~~g~~~~y~d-----~-~ell~~-   84 (350)
T 4had_A           21 QSMLRFGIISTAKIGRDNVVPAI-QD--AE--NCVVTAIASRD----LTRAREMADRFSVPHAFGS-----Y-EEMLAS-   84 (350)
T ss_dssp             -CCEEEEEESCCHHHHHTHHHHH-HH--CS--SEEEEEEECSS----HHHHHHHHHHHTCSEEESS-----H-HHHHHC-
T ss_pred             cCccEEEEEcChHHHHHHHHHHH-Hh--CC--CeEEEEEECCC----HHHHHHHHHHcCCCeeeCC-----H-HHHhcC-
Confidence            45789999999862   333333 22  12  38999887643    2457889999999965521     2 233321 


Q ss_pred             cCCcEEEEec
Q 021895          203 QNTDFLVLAR  212 (306)
Q Consensus       203 ~~~D~vVlA~  212 (306)
                      .++|+|+++-
T Consensus        85 ~~iDaV~I~t   94 (350)
T 4had_A           85 DVIDAVYIPL   94 (350)
T ss_dssp             SSCSEEEECS
T ss_pred             CCCCEEEEeC
Confidence            2789999974

>3l76_A Aspartokinase; allostery, ACT domains, kinase transferase; HET: LYS; 2.54A {Synechocystis}

Probab=83.54  E-value=19  Score=36.39  Aligned_cols=129  Identities=13%  Similarity=0.088  Sum_probs=76.9

Q ss_pred             EEEEEEc-CCccchHHHHHHHHHhcCCeEeEeeeeccCCCCeEEEEEEEEeCCCCCCHHHHHHHHHHHHhhh-------h
Q 021895           43 GIHVFHC-PDEVGIVAKLSECIASRGGNILAADVFVPEKKNVFYSRSEFIFDPIKWPREQMDEDFFKLSKMF-------N  114 (306)
Q Consensus        43 ~ILTViG-pDRpGIVAaVS~~LAe~G~NIlD~sQ~id~l~G~FfMrmeVdv~~~~~~~eeLreaL~~la~el-------g  114 (306)
                      ..|++.+ +|++|+.++|-+.|+++|+||.-+.|... ..|.-.+-+  .++..  +.+...+.++++..++       +
T Consensus       271 ~~i~i~~~~~~~g~~~~if~~La~~~I~Vd~I~qs~~-~~~~~~Isf--tv~~~--~~~~a~~~l~~~~~el~~~~~~~~  345 (600)
T 3l76_A          271 AKVALLRVPDRPGVASKLFRDIAQQQVDIDLIIQSIH-DGNSNDIAF--TVVKD--LLNTAEAVTSAIAPALRSYPEADQ  345 (600)
T ss_dssp             EEEEEEEEECSTTHHHHHHHHHHHTTCCCCCEEBCCC-BTTEEEEEE--EECGG--GHHHHHHHHHHHGGGGSSSTTCSS
T ss_pred             EEEEEeCCCCcccHHHHHHHHHHHcCCCEEEEEeecc-CCCCceEEE--EEeHH--HHHHHHHHHHHHHHHhhccccccC
Confidence            4566665 79999999999999999999988888542 245444333  34432  5666777788777776       2


Q ss_pred             cccceeeecCCCCCceEEEEEeCCc---chHHHHHHhhhcCCCC--------eEEEEEeeCCCCCCChhHHHHHHhCCC
Q 021895          115 AMRSVVRVPDIDPKYKVAVLASKQE---HCLVDFLYGWQEGKLP--------VEITCVISNHDRGPNSHVIRFLERHGI  182 (306)
Q Consensus       115 l~~~~~rl~~~~~~~riavl~S~~g---~~L~~ll~~~~~g~l~--------~~I~~Visn~~~~~~~~~~~~A~~~gI  182 (306)
                      ..    .+.-.+.--+|++.+.+-.   ..+..++..+.+-.++        ..|.++|...|.  ...+..+-+++..
T Consensus       346 ~~----~v~~~~~~a~VsvVG~gm~~~~Gv~a~if~aL~~~~Ini~~istSe~~Is~vI~~~d~--~~Av~aLh~~f~~  418 (600)
T 3l76_A          346 EA----EIIVEKGIAKIAIAGAGMIGRPGIAAKMFKTLADVGVNIEMISTSEVKVSCVIDQRDA--DRAIAALSNAFGV  418 (600)
T ss_dssp             SS----EEEEECSEEEEEEECGGGTTCTTHHHHHHHHHHHTTCCCCEEEECSSEEEEEEEGGGH--HHHHHHHHHHTTC
T ss_pred             cc----eeEecCCeEEEEEECCCcccCccHHHHHHHHHHhCCCcEEEEecCCCEEEEEEcHHHH--HHHHHHHHHhhcc
Confidence            21    1222344567888877531   2344455554433322        457777776531  2233334445543

>1nvm_B Acetaldehyde dehydrogenase (acylating), 4-hydroxy-2-oxovalerate aldolase; sequestered tunnel, substrate channeling; HET: NAD; 1.70A {Pseudomonas SP} SCOP: c.2.1.3 d.81.1.1

Probab=82.66  E-value=3  Score=38.67  Aligned_cols=74  Identities=23%  Similarity=0.264  Sum_probs=43.8

Q ss_pred             CCceEEEEEeCC-cchHHHHHHhhhcCCCCeEEEEEeeCCCCCCChhHHHHHHhCCCCEEEeCCCCCChHHHHHHHh--c
Q 021895          127 PKYKVAVLASKQ-EHCLVDFLYGWQEGKLPVEITCVISNHDRGPNSHVIRFLERHGIPYHYLCAKENEREEELLELV--Q  203 (306)
Q Consensus       127 ~~~riavl~S~~-g~~L~~ll~~~~~g~l~~~I~~Visn~~~~~~~~~~~~A~~~gIp~~~~~~k~~~~e~e~~~~v--~  203 (306)
                      ++.||+|+++|. |..+...+... .+  ..++++|++..   ++..++++|+++|++...      ..-+++++..  .
T Consensus         3 ~~irVaIIG~G~iG~~~~~~l~~~-~~--~~elvav~d~~---~~~~~~~~a~~~g~~~~~------~~~e~ll~~~~~~   70 (312)
T 1nvm_B            3 QKLKVAIIGSGNIGTDLMIKVLRN-AK--YLEMGAMVGID---AASDGLARAQRMGVTTTY------AGVEGLIKLPEFA   70 (312)
T ss_dssp             SCEEEEEECCSHHHHHHHHHHHHH-CS--SEEEEEEECSC---TTCHHHHHHHHTTCCEES------SHHHHHHHSGGGG
T ss_pred             CCCEEEEEcCcHHHHHHHHHHHhh-Cc--CeEEEEEEeCC---hhhhHHHHHHHcCCCccc------CCHHHHHhccCCC
Confidence            467999999875 23332222210 12  37888887754   334467889999987532      1223454431  3


Q ss_pred             CCcEEEEec
Q 021895          204 NTDFLVLAR  212 (306)
Q Consensus       204 ~~D~vVlA~  212 (306)
                      ++|+|+.|-
T Consensus        71 ~iDvV~~at   79 (312)
T 1nvm_B           71 DIDFVFDAT   79 (312)
T ss_dssp             GEEEEEECS
T ss_pred             CCcEEEECC
Confidence            578888863

>2i6u_A Otcase, ornithine carbamoyltransferase; X-RAY crystallography, ornithine carbamyoltransferase, carbamoyl phosphate, L- norvaline; 2.20A {Mycobacterium tuberculosis} PDB: 2p2g_A

Probab=82.44  E-value=12  Score=35.12  Aligned_cols=58  Identities=21%  Similarity=0.320  Sum_probs=37.3

Q ss_pred             HHhcCCcEEEEeccCCCCcCchhhhhhhhhhhhhccCCCccccc-cccCCHhHHhhcCCCeeEeCCCCCCCCCCC
Q 021895          200 ELVQNTDFLVLARYMQPVPLQKEAYLGYKLLESLSSKGSLTSYF-NMILSGKFLRSYGKDVINIHHGLLPSFKGG  273 (306)
Q Consensus       200 ~~v~~~D~vVlA~ym~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~il~~~~l~~~~~~iINiHpsLLP~f~Ga  273 (306)
                      +.++++|+|..-+|-+ .--+.| +            -....|+ .-.++.+.++..+.++|=.||  ||++||-
T Consensus       213 eav~~aDvvy~~~w~s-mg~~~~-~------------~~~~~~~~~y~v~~~~l~~a~~~ai~mH~--lP~~Rg~  271 (307)
T 2i6u_A          213 AAAAGADVLVTDTWTS-MGQEND-G------------LDRVKPFRPFQLNSRLLALADSDAIVLHC--LPAHRGD  271 (307)
T ss_dssp             HHHTTCSEEEECCSSC-TTCTTS-C------------CCSSGGGGGGCBCHHHHHHSCTTCEEEEC--SCCCBTT
T ss_pred             HHhcCCCEEEecceec-CCcccc-h------------HHHHHHHhhcCCCHHHHhhcCCCcEEECC--CCCCCCc
Confidence            4566899999999933 000000 0            0111122 235899999988889999998  7999984

>3mwb_A Prephenate dehydratase; L-Phe, PSI, MCSG, structural genomics, midwest center for ST genomics, protein structure initiative, lyase; HET: MSE PHE; 2.00A {Arthrobacter aurescens}

Probab=82.42  E-value=10  Score=35.76  Aligned_cols=70  Identities=14%  Similarity=0.162  Sum_probs=46.6

Q ss_pred             cccEEEEEEcC-CccchHHHHHHHHHhcCCeEeEeeeeccC-CCCeEEEEEEEEeCCCCCCHHHHHHHHHHHHhh
Q 021895           40 LTHGIHVFHCP-DEVGIVAKLSECIASRGGNILAADVFVPE-KKNVFYSRSEFIFDPIKWPREQMDEDFFKLSKM  112 (306)
Q Consensus        40 ~~k~ILTViGp-DRpGIVAaVS~~LAe~G~NIlD~sQ~id~-l~G~FfMrmeVdv~~~~~~~eeLreaL~~la~e  112 (306)
                      .++.-|.+.=+ |+||-.+.+=+.++.+|+|...++..-.. ..+.|...++++  + ..+-+.++++|+++.+.
T Consensus       199 ~~kTSl~f~~~~~~pGaL~~~L~~Fa~~gINLtkIESRP~~~~~~~Y~FfiD~e--g-~~~d~~v~~aL~~L~~~  270 (313)
T 3mwb_A          199 ADKTTVVVPLPEDHPGALMEILDQFASRGVNLSRIESRPTGQYLGHYFFSIDAD--G-HATDSRVADALAGLHRI  270 (313)
T ss_dssp             SEEEEEEEECSSCCTTHHHHHHHHHHTTTCCEEEEEEEECSSSTTSEEEEEEEE--S-CTTSHHHHHHHHHHHHH
T ss_pred             CCeEEEEEEeCCCCCCHHHHHHHHHHHCCccEEEEEEeecCCCCccEEEEEEEe--C-CCCcHHHHHHHHHHHHh
Confidence            34555555555 99999999999999999999888775221 123343345554  2 23456788888877544

>3grf_A Ornithine carbamoyltransferase; ornithine transcarbamoylase, arginine degradation pathway, giardia lamblia, drug target; 2.00A {Giardia intestinalis}

Probab=82.22  E-value=5.3  Score=37.88  Aligned_cols=59  Identities=15%  Similarity=0.197  Sum_probs=37.0

Q ss_pred             HHHhcCCcEEEEecc--CCCCcCchhhhhhhhhhhhhccCCCccccccccCCHhHHhhcCCCeeEeCCCCCCCCCCC
Q 021895          199 LELVQNTDFLVLARY--MQPVPLQKEAYLGYKLLESLSSKGSLTSYFNMILSGKFLRSYGKDVINIHHGLLPSFKGG  273 (306)
Q Consensus       199 ~~~v~~~D~vVlA~y--m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~~~l~~~~~~iINiHpsLLP~f~Ga  273 (306)
                      .+.++++|+|..-.|  |+   +|+|++-.+           ...+..-.+..+.++..+.++|=.||  ||++||-
T Consensus       229 ~eav~~aDvvytd~W~sm~---iq~er~~~~-----------~~~~~~y~vt~~~l~~a~~~ai~mH~--lPa~Rg~  289 (328)
T 3grf_A          229 KKGCEGVDVVYTDSWMSYH---ITKEQKEAR-----------LKVLTPFQVDDAVMAVTSKRSIFMNC--LPATRGE  289 (328)
T ss_dssp             HHHHTTCSEEEECCCC-----------CCTH-----------HHHHGGGCBCHHHHTTSCTTCEEEEC--SCCCTTT
T ss_pred             HHHhcCCCEEEecCccccC---CcHHHHHHH-----------HHHhcCCCCCHHHHHhcCCCCEEECC--CCCCCCC
Confidence            345679999998777  44   677776211           01111236899999988889999999  6999984

>2qmw_A PDT, prephenate dehydratase; APC85812, prephenate dehydratase (PDT), staphylococcus aureu aureus MU50, structural genomics, PSI-2; 2.30A {Staphylococcus aureus subsp} SCOP: c.94.1.1 d.58.18.3

Probab=82.05  E-value=6.2  Score=36.33  Aligned_cols=68  Identities=10%  Similarity=-0.003  Sum_probs=45.2

Q ss_pred             ccEEEEEEc---CCccchHHHHHHHHHhcCCeEeEeeeeccCC-CCeEEEEEEEEeCCCCCCHHHHHHHHHHHHhh
Q 021895           41 THGIHVFHC---PDEVGIVAKLSECIASRGGNILAADVFVPEK-KNVFYSRSEFIFDPIKWPREQMDEDFFKLSKM  112 (306)
Q Consensus        41 ~k~ILTViG---pDRpGIVAaVS~~LAe~G~NIlD~sQ~id~l-~G~FfMrmeVdv~~~~~~~eeLreaL~~la~e  112 (306)
                      ++.-|.+.-   +|+||-.+++=+.++.+|+|...++..-.+. .+.|..-++++ .   .+-+.++++|+++.+.
T Consensus       185 ~ktsl~f~~~~~~~~pGaL~~~L~~Fa~~gINLtkIESRP~~~~~~~Y~FfiD~e-~---~~d~~v~~aL~~L~~~  256 (267)
T 2qmw_A          185 NATSLMFLITPMHDKPGLLASVLNTFALFNINLSWIESRPLKTQLGMYRFFVQAD-S---AITTDIKKVIAILETL  256 (267)
T ss_dssp             SCSEEEEEEEESSCCTTHHHHHHHHHHTTTCCEEEEEEEECSSSTTCEEEEEEES-C---CSCHHHHHHHHHHHHT
T ss_pred             CeEEEEEEcCCCCCCcChHHHHHHHHHHcCCCeeEEEEeecCCCCccEEEEEEEe-c---CCcHHHHHHHHHHHHh
Confidence            343444444   8999999999999999999999988763221 23333344444 2   2347788888877543

>2qmx_A Prephenate dehydratase; APC86053, L-Phe inhibition, PDT, CHL tepidum TLS, structural genomics, PSI-2, protein structure initiative; HET: PHE; 2.30A {Chlorobium tepidum tls}

Probab=81.30  E-value=7.1  Score=36.22  Aligned_cols=68  Identities=18%  Similarity=0.224  Sum_probs=45.5

Q ss_pred             ccEEEEEEcCCccchHHHHHHHHHhcCCeEeEeeeeccCC-CCeEEEEEEEEeCCCCCCHHHHHHHHHHHHh
Q 021895           41 THGIHVFHCPDEVGIVAKLSECIASRGGNILAADVFVPEK-KNVFYSRSEFIFDPIKWPREQMDEDFFKLSK  111 (306)
Q Consensus        41 ~k~ILTViGpDRpGIVAaVS~~LAe~G~NIlD~sQ~id~l-~G~FfMrmeVdv~~~~~~~eeLreaL~~la~  111 (306)
                      ++.-|.+.-+|+||-.+++=+.++.+|+|...++..-... .+.|...++++  + ..+-+.++++|+++.+
T Consensus       199 ~ktsl~f~~~~~pGaL~~~L~~Fa~~gINLtkIESRP~~~~~~~Y~FfvD~e--g-~~~d~~v~~aL~~L~~  267 (283)
T 2qmx_A          199 QKTSIVFALPNEQGSLFRALATFALRGIDLTKIESRPSRKKAFEYLFYADFI--G-HREDQNVHNALENLRE  267 (283)
T ss_dssp             EEEEEEEEEECCTTHHHHHHHHHHTTTCCEEEEEEEECSSSTTEEEEEEEEE--S-CTTSHHHHHHHHHHHT
T ss_pred             ceEEEEEEcCCCCchHHHHHHHHHHcCCCeeEEEeeEcCCCCcceEEEEEEe--c-CCCcHHHHHHHHHHHH
Confidence            3443444447999999999999999999999988763221 23344344554  2 2344778888887654

>4fb5_A Probable oxidoreductase protein; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium, GFO/IDH/MOCA family; 2.61A {Rhizobium etli}

Probab=80.53  E-value=2.9  Score=37.80  Aligned_cols=74  Identities=5%  Similarity=0.031  Sum_probs=43.3

Q ss_pred             CCceEEEEEeCCc-c-hHHHHHHhhh--cCCCC-eEEEEEeeCCCCCCChhHHHHHHhCCCCEEEeCCCCCChHHHHHHH
Q 021895          127 PKYKVAVLASKQE-H-CLVDFLYGWQ--EGKLP-VEITCVISNHDRGPNSHVIRFLERHGIPYHYLCAKENEREEELLEL  201 (306)
Q Consensus       127 ~~~riavl~S~~g-~-~L~~ll~~~~--~g~l~-~~I~~Visn~~~~~~~~~~~~A~~~gIp~~~~~~k~~~~e~e~~~~  201 (306)
                      +|.||+|++.|.- . .+.++ .+..  -...+ ++|++|....+    ..+.++|+++|+|-.+-+      -+++++-
T Consensus        24 kkirvgiIG~G~ig~~H~~a~-~~~~~~~~~~~~~~lvav~d~~~----~~a~~~a~~~g~~~~y~d------~~ell~~   92 (393)
T 4fb5_A           24 KPLGIGLIGTGYMGKCHALAW-NAVKTVFGDVERPRLVHLAEANA----GLAEARAGEFGFEKATAD------WRALIAD   92 (393)
T ss_dssp             CCCEEEEECCSHHHHHHHHHH-TTHHHHHCSSCCCEEEEEECC------TTHHHHHHHHTCSEEESC------HHHHHHC
T ss_pred             CCccEEEEcCCHHHHHHHHHH-HhhhhhhccCCCcEEEEEECCCH----HHHHHHHHHhCCCeecCC------HHHHhcC
Confidence            5679999999863 1 12221 1110  12223 79999886542    246889999999965521      2333321


Q ss_pred             hcCCcEEEEec
Q 021895          202 VQNTDFLVLAR  212 (306)
Q Consensus       202 v~~~D~vVlA~  212 (306)
                       .++|+|++|-
T Consensus        93 -~~iDaV~Iat  102 (393)
T 4fb5_A           93 -PEVDVVSVTT  102 (393)
T ss_dssp             -TTCCEEEECS
T ss_pred             -CCCcEEEECC
Confidence             1789999984

>1wy5_A TILS, hypothetical UPF0072 protein AQ_1887; N-type ATP-ppase, structural genomics, translation, NPPSFA; 2.42A {Aquifex aeolicus} SCOP: c.26.2.5 d.229.1.1 PDB: 2e21_A* 2e89_A*

Probab=80.27  E-value=4.7  Score=36.92  Aligned_cols=79  Identities=11%  Similarity=0.077  Sum_probs=51.4

Q ss_pred             HHHHHHHHHHHhhhhcccceeeecCCCCCceEEEEEeCCc--chHHHHHHhhhcCCCCeE-EEEEeeCCCCCCC-----h
Q 021895          100 EQMDEDFFKLSKMFNAMRSVVRVPDIDPKYKVAVLASKQE--HCLVDFLYGWQEGKLPVE-ITCVISNHDRGPN-----S  171 (306)
Q Consensus       100 eeLreaL~~la~elgl~~~~~rl~~~~~~~riavl~S~~g--~~L~~ll~~~~~g~l~~~-I~~Visn~~~~~~-----~  171 (306)
                      ..+.+.+.+..++.++         ..+..||+|..||.-  .+|-.++..++. .++.+ +.+|..||.-.+.     .
T Consensus         5 ~~~~~~~~~~i~~~~l---------~~~~~~vlva~SGG~DS~~Ll~ll~~~~~-~~g~~~v~av~vd~g~r~~s~~~~~   74 (317)
T 1wy5_A            5 SRVIRKVLALQNDEKI---------FSGERRVLIAFSGGVDSVVLTDVLLKLKN-YFSLKEVALAHFNHMLRESAERDEE   74 (317)
T ss_dssp             HHHHHHHHHHHHHHCS---------CSSCCEEEEECCSSHHHHHHHHHHHHSTT-TTTCSEEEEEEEECCSSTHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCC---------CCCCCEEEEEecchHHHHHHHHHHHHHHH-HcCCCEEEEEEEECCCCcccHHHHH
Confidence            4456666665555553         123458999999964  556566655432 34567 8888888742111     3


Q ss_pred             hHHHHHHhCCCCEEEeC
Q 021895          172 HVIRFLERHGIPYHYLC  188 (306)
Q Consensus       172 ~~~~~A~~~gIp~~~~~  188 (306)
                      .+.++|+++|||++++.
T Consensus        75 ~v~~~a~~lgi~~~v~~   91 (317)
T 1wy5_A           75 FCKEFAKERNMKIFVGK   91 (317)
T ss_dssp             HHHHHHHHHTCCEEEEE
T ss_pred             HHHHHHHHcCCcEEEEE
Confidence            57888999999999876

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	306
d1meoa_	205	c.65.1.1 (A:) Glycinamide ribonucleotide transform	4e-08
d1jkxa_	209	c.65.1.1 (A:) Glycinamide ribonucleotide transform	1e-06
d1u8sa2	93	d.58.18.5 (A:88-180) putative transcriptional repr	2e-06
d1u8sa1	86	d.58.18.5 (A:2-87) putative transcriptional repres	6e-06
d1zpva1	83	d.58.18.7 (A:1-83) UPF0237 protein SP0238 {Strepto	3e-05

>d1meoa_ c.65.1.1 (A:) Glycinamide ribonucleotide transformylase, GART {Human (Homo sapiens) [TaxId: 9606]} Length = 205

class: Alpha and beta proteins (a/b)
fold: Formyltransferase
superfamily: Formyltransferase
family: Formyltransferase
domain: Glycinamide ribonucleotide transformylase, GART
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 50.7 bits (120), Expect = 4e-08
 Identities = 33/163 (20%), Positives = 50/163 (30%), Gaps = 27/163 (16%)

Query: 130 KVAVLASKQEHCLVDFLYGWQEGKLPVEITCVISNHDRGPNSHVIRFLERHGIPYHYLCA 189
           +VAVL S     L   +   +E     +I  VISN                    ++   
Sbjct: 2   RVAVLISGTGSNLQALIDSTREPNSSAQIDIVISNKAAVAGLDKAERAGIPTRVINHKLY 61

Query: 190 KENEREEELLELVQNTDFLVLARYMQPVPLQKEAYLGYKLLESLSSKGSLTSYFNMILSG 249
           K     +  +                             +LE  S      + F  ILSG
Sbjct: 62  KNRVEFDSAI---------------------------DLVLEEFSIDIVCLAGFMRILSG 94

Query: 250 KFLRSYGKDVINIHHGLLPSFKGGKPAKQVGCFTFCLGNLITI 292
            F++ +   ++NIH  LLPSFKG    +Q       +      
Sbjct: 95  PFVQKWNGKMLNIHPSLLPSFKGSNAHEQALETGVTVTGCTVH 137

>d1jkxa_ c.65.1.1 (A:) Glycinamide ribonucleotide transformylase, GART {Escherichia coli [TaxId: 562]} Length = 209

class: Alpha and beta proteins (a/b)
fold: Formyltransferase
superfamily: Formyltransferase
family: Formyltransferase
domain: Glycinamide ribonucleotide transformylase, GART
species: Escherichia coli [TaxId: 562]

 Score = 46.0 bits (108), Expect = 1e-06
 Identities = 16/89 (17%), Positives = 28/89 (31%), Gaps = 3/89 (3%)

Query: 130 KVAVLASKQEHCLVDFLYGWQEGKLPVEITCVISNH-DRGPNSHVIRFLERHGIPYHYLC 188
            + VL S     L   +   +  K+   +  V SN  D        +             
Sbjct: 2   NIVVLISGNGSNLQAIIDACKTNKIKGTVRAVFSNKADAFGLERARQAGIATHTLIASAF 61

Query: 189 AKENEREEELLELVQ--NTDFLVLARYMQ 215
                 + EL+  +     D +VLA +M+
Sbjct: 62  DSREAYDRELIHEIDMYAPDVVVLAGFMR 90

>d1u8sa2 d.58.18.5 (A:88-180) putative transcriptional repressor VC2159 {Vibrio cholerae [TaxId: 666]} Length = 93

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: Glycine cleavage system transcriptional repressor
domain: putative transcriptional repressor VC2159
species: Vibrio cholerae [TaxId: 666]

 Score = 43.0 bits (101), Expect = 2e-06
 Identities = 13/84 (15%), Positives = 30/84 (35%), Gaps = 8/84 (9%)

Query: 39  TLTHGIHVF-HCPDEVGIVAKLSECIASRGGNILAADV------FVPEKKNVFYSRSEFI 91
           T  + + V+    D++G+  K ++  A R   + +          +  ++N F+      
Sbjct: 2   THAYTVEVYVESDDKLGLTEKFTQFFAQRQIGMASLSAQTISKDKLHSEQNQFHIAISAR 61

Query: 92  FDPIKWPREQMDEDFFKLSKMFNA 115
                    Q+ E+F  L    + 
Sbjct: 62  V-DSGCNLMQLQEEFDALCTALDV 84

>d1u8sa1 d.58.18.5 (A:2-87) putative transcriptional repressor VC2159 {Vibrio cholerae [TaxId: 666]} Length = 86

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: Glycine cleavage system transcriptional repressor
domain: putative transcriptional repressor VC2159
species: Vibrio cholerae [TaxId: 666]

 Score = 41.7 bits (98), Expect = 6e-06
 Identities = 10/76 (13%), Positives = 25/76 (32%), Gaps = 4/76 (5%)

Query: 47  FHCPDEVGIVAKLSECIASRGGNILAADVFVPEKKNVFYSRSEFIFDPIKWPREQMDEDF 106
               D  GI  ++   +   G NI+ + + +  K+             I     +++   
Sbjct: 10  AVGTDRPGICNEVVRLVTQAGCNIIDSRIAMFGKEFTLLMLISGSPSNI----TRVETTL 65

Query: 107 FKLSKMFNAMRSVVRV 122
             L +  + +  + R 
Sbjct: 66  PLLGQQHDLITMMKRT 81

>d1zpva1 d.58.18.7 (A:1-83) UPF0237 protein SP0238 {Streptococcus pneumoniae [TaxId: 1313]} Length = 83

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: SP0238-like
domain: UPF0237 protein SP0238
species: Streptococcus pneumoniae [TaxId: 1313]

 Score = 39.4 bits (92), Expect = 3e-05
 Identities = 14/68 (20%), Positives = 22/68 (32%), Gaps = 3/68 (4%)

Query: 47  FHCPDEVGIVAKLSECIASRGGNILAADVFVPEKKNVFYSRSEFIFDPIKWPREQMDEDF 106
               D+ GIVA +S  IA  G NI      V ++     +               +  +F
Sbjct: 7   VVGKDKSGIVAGVSGKIAELGLNIDDISQTVLDEYFTMMAVVSSDEKQ---DFTYLRNEF 63

Query: 107 FKLSKMFN 114
               +  N
Sbjct: 64  EAFGQTLN 71

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	306
d1jkxa_	209	Glycinamide ribonucleotide transformylase, GART {E	99.93
d1meoa_	205	Glycinamide ribonucleotide transformylase, GART {H	99.93
d2bw0a2	203	10-formyltetrahydrofolate dehydrogenase domain 1 {	99.83
d1zpva1	83	UPF0237 protein SP0238 {Streptococcus pneumoniae [	99.8
d2blna2	203	Polymyxin resistance protein ArnA, N-terminal doma	99.78
d1fmta2	206	Methionyl-tRNAfmet formyltransferase {Escherichia	99.78
d1u8sa1	86	putative transcriptional repressor VC2159 {Vibrio	99.68
d1u8sa2	93	putative transcriptional repressor VC2159 {Vibrio	99.67
d1zgha2	164	Methionyl-tRNAfmet formyltransferase {Clostridium	98.99
d1y7pa2	77	Hypothetical protein AF1403, N-terminal domain {Ar	98.02
d1ygya3	78	Phosphoglycerate dehydrogenase, regulatory (C-term	97.97
d1sc6a3	84	Phosphoglycerate dehydrogenase, regulatory (C-term	97.65
d2pc6a2	77	Acetolactate synthase small subunit, IlvH {Nitroso	97.61
d2fgca2	78	Acetolactate synthase small subunit, IlvH {Thermot	97.55
d2f1fa1	76	Acetolactate synthase small subunit, IlvH {Escheri	96.97
d2f06a2	70	Hypothetical protein BT0572 {Bacteroides thetaiota	96.74
d2f06a1	71	Hypothetical protein BT0572 {Bacteroides thetaiota	96.74
d1nvmb1	157	Acetaldehyde dehydrogenase (acylating) {Pseudomona	95.55
d2hmfa3	100	Aspartokinase {Methanococcus jannaschii [TaxId: 21	94.75
d2hmfa2	67	Aspartokinase {Methanococcus jannaschii [TaxId: 21	94.69
d2qmwa2	80	Prephenate dehydratase C-terminal domain {Staphylo	94.27
d1phza1	97	Phenylalanine hydroxylase N-terminal domain {Rat (	93.77
d2cdqa3	75	Aspartokinase {Thale cress (Arabidopsis thaliana)	93.33
d2cdqa2	91	Aspartokinase {Thale cress (Arabidopsis thaliana)	92.28
d2d13a1	226	Hypothetical protein PH1257 {Archaeon Pyrococcus h	90.73
d1ni5a1	227	tRNA-Ile-lysidine synthetase, TilS, N-terminal dom	88.56
d1zhva2	66	Hypothetical protein Atu0741 {Agrobacterium tumefa	88.22
d1r0ka2	150	1-deoxy-D-xylulose-5-phosphate reductoisomerase {Z	86.25
d1tlta1	164	Virulence factor MviM {Escherichia coli [TaxId: 56	82.49
d2ahra2	152	Pyrroline-5-carboxylate reductase ProC {Streptococ	80.41

>d1jkxa_ c.65.1.1 (A:) Glycinamide ribonucleotide transformylase, GART {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Formyltransferase
superfamily: Formyltransferase
family: Formyltransferase
domain: Glycinamide ribonucleotide transformylase, GART
species: Escherichia coli [TaxId: 562]

Probab=99.93  E-value=3e-26  Score=202.17  Aligned_cols=127  Identities=26%  Similarity=0.350  Sum_probs=111.7

Q ss_pred             ceEEEEEeCCcchHHHHHHhhhcCCCCeEEEEEeeCCCCCCChhHHHHHHhCCCCEEEeCCC-CCC---hHHHHHHHhc-
Q 021895          129 YKVAVLASKQEHCLVDFLYGWQEGKLPVEITCVISNHDRGPNSHVIRFLERHGIPYHYLCAK-ENE---REEELLELVQ-  203 (306)
Q Consensus       129 ~riavl~S~~g~~L~~ll~~~~~g~l~~~I~~Visn~~~~~~~~~~~~A~~~gIp~~~~~~k-~~~---~e~e~~~~v~-  203 (306)
                      +|||||+||+|+||++|+++++.++++++|++||||+   +++.++++|+..++|...+..+ ...   .|+++.+.++ 
T Consensus         1 MkIaVl~SG~GSnL~aLl~a~~~~~l~~~I~~Visn~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~   77 (209)
T d1jkxa_           1 MNIVVLISGNGSNLQAIIDACKTNKIKGTVRAVFSNK---ADAFGLERARQAGIATHTLIASAFDSREAYDRELIHEIDM   77 (209)
T ss_dssp             CEEEEEESSCCHHHHHHHHHHHTTSSSSEEEEEEESC---TTCHHHHHHHHTTCEEEECCGGGCSSHHHHHHHHHHHHGG
T ss_pred             CEEEEEEecCcHHHHHHHHHHHcCCCCCEEEEEEeCC---CCcccchhhhccccceeeeeccccccccchHHHHHHHHHh
Confidence            6999999999999999999999999999999999998   5678899999999999887632 222   2466777777 


Q ss_pred             -CCcEEEEeccCCCCcCchhhhhhhhhhhhhccCCCccccccccCCHhHHhhcCCCeeEeCCCCCCCCCCCcHHHHHHHH
Q 021895          204 -NTDFLVLARYMQPVPLQKEAYLGYKLLESLSSKGSLTSYFNMILSGKFLRSYGKDVINIHHGLLPSFKGGKPAKQVGCF  282 (306)
Q Consensus       204 -~~D~vVlA~ym~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~~~l~~~~~~iINiHpsLLP~f~Ga~p~~~A~~~  282 (306)
                       ++|++|++|||+                              |+++++++.|+.++||+||||||.|||++|++||+..
T Consensus        78 ~~~Dliv~~g~~~------------------------------il~~~~l~~~~~~~iN~HpslLP~~rG~~p~~~~i~~  127 (209)
T d1jkxa_          78 YAPDVVVLAGFMR------------------------------ILSPAFVSHYAGRLLNIHPSLLPKYPGLHTHRQALEN  127 (209)
T ss_dssp             GCCSEEEESSCCS------------------------------CCCHHHHHHTTTSEEEEESSCTTSCCSSCHHHHHHHT
T ss_pred             cCCCEEEEeeeeE------------------------------ecChhhhcccccCEEEeCCchhcccCCcCchhHHHHC
Confidence             899999999999                              9999999999999999999999999999999999765


Q ss_pred             HhhcCc
Q 021895          283 TFCLGN  288 (306)
Q Consensus       283 ~~~l~~  288 (306)
                      .-...|
T Consensus       128 g~~~~G  133 (209)
T d1jkxa_         128 GDEEHG  133 (209)
T ss_dssp             TCSEEE
T ss_pred             CCeeec
Confidence            544433

>d1meoa_ c.65.1.1 (A:) Glycinamide ribonucleotide transformylase, GART {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Formyltransferase
superfamily: Formyltransferase
family: Formyltransferase
domain: Glycinamide ribonucleotide transformylase, GART
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.93  E-value=6.8e-26  Score=199.33  Aligned_cols=124  Identities=31%  Similarity=0.446  Sum_probs=109.7

Q ss_pred             eEEEEEeCCcchHHHHHHhhhcCCCCeEEEEEeeCCCCCCChhHHHHHHhCCCCEEEeCCC-CCCh---HHHHHHHhc--
Q 021895          130 KVAVLASKQEHCLVDFLYGWQEGKLPVEITCVISNHDRGPNSHVIRFLERHGIPYHYLCAK-ENER---EEELLELVQ--  203 (306)
Q Consensus       130 riavl~S~~g~~L~~ll~~~~~g~l~~~I~~Visn~~~~~~~~~~~~A~~~gIp~~~~~~k-~~~~---e~e~~~~v~--  203 (306)
                      |||||+||.|+||++|+++++.++++++|++||||+   +++.++.+|+..++|......+ ...+   ++++.+.++  
T Consensus         2 ri~vl~SG~Gsnl~aLl~~~~~~~l~~~I~~Vitn~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~   78 (205)
T d1meoa_           2 RVAVLISGTGSNLQALIDSTREPNSSAQIDIVISNK---AAVAGLDKAERAGIPTRVINHKLYKNRVEFDSAIDLVLEEF   78 (205)
T ss_dssp             EEEEEESSSCTTHHHHHHHHHSTTCSCEEEEEEESS---TTCHHHHHHHHTTCCEEECCGGGSSSHHHHHHHHHHHHHHT
T ss_pred             EEEEEEeCCcHhHHHHHHHHhcCCCCCEEEEEEECC---ccccccccccccccccccccccccchhhhHHHHHHHHHhhc
Confidence            899999999999999999999999999999999998   5678899999999999887632 2222   356777776  


Q ss_pred             CCcEEEEeccCCCCcCchhhhhhhhhhhhhccCCCccccccccCCHhHHhhcCCCeeEeCCCCCCCCCCCcHHHHHHHHH
Q 021895          204 NTDFLVLARYMQPVPLQKEAYLGYKLLESLSSKGSLTSYFNMILSGKFLRSYGKDVINIHHGLLPSFKGGKPAKQVGCFT  283 (306)
Q Consensus       204 ~~D~vVlA~ym~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~~~l~~~~~~iINiHpsLLP~f~Ga~p~~~A~~~~  283 (306)
                      ++|++|+||||+                              |+++++++.|+.++||+||||||.|||++|++||+...
T Consensus        79 ~~Dliv~~g~~~------------------------------il~~~~l~~~~~~~iN~HpslLP~~rG~~~~~~ai~~g  128 (205)
T d1meoa_          79 SIDIVCLAGFMR------------------------------ILSGPFVQKWNGKMLNIHPSLLPSFKGSNAHEQALETG  128 (205)
T ss_dssp             TCCEEEEESCCS------------------------------CCCHHHHHHTTTSEEEEESSSTTSSCSSCHHHHHHHHT
T ss_pred             ccceeeeechhc------------------------------ccCHHHHHhccCCeeecCccccchhhhhhhHHHHHhcC
Confidence            899999999999                              99999999999999999999999999999999997655


Q ss_pred             hhc
Q 021895          284 FCL  286 (306)
Q Consensus       284 ~~l  286 (306)
                      ..-
T Consensus       129 ~~~  131 (205)
T d1meoa_         129 VTV  131 (205)
T ss_dssp             CSE
T ss_pred             Ccc
Confidence            443

>d2bw0a2 c.65.1.1 (A:1-203) 10-formyltetrahydrofolate dehydrogenase domain 1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Formyltransferase
superfamily: Formyltransferase
family: Formyltransferase
domain: 10-formyltetrahydrofolate dehydrogenase domain 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.83  E-value=6.2e-21  Score=166.97  Aligned_cols=120  Identities=16%  Similarity=0.160  Sum_probs=98.3

Q ss_pred             ceEEEEEeCCc--chHHHHHHhhhcCCCCeEEEEEeeCCCCC-CChhHHHHHHhCCCCEEEeCCC--CCChHHHHHHHhc
Q 021895          129 YKVAVLASKQE--HCLVDFLYGWQEGKLPVEITCVISNHDRG-PNSHVIRFLERHGIPYHYLCAK--ENEREEELLELVQ  203 (306)
Q Consensus       129 ~riavl~S~~g--~~L~~ll~~~~~g~l~~~I~~Visn~~~~-~~~~~~~~A~~~gIp~~~~~~k--~~~~e~e~~~~v~  203 (306)
                      |||++++|++.  .+|+.|++.      ..+|++|+|.+|+. ...++.++|+++|||++.....  .+..++++++.++
T Consensus         1 MkI~~~G~~~~~~~~l~~L~~~------~~~i~~V~t~p~~~~~~~~v~~~a~~~~ipv~~~~~~~~~~~~~~~~~~~l~   74 (203)
T d2bw0a2           1 MKIAVIGQSLFGQEVYCHLRKE------GHEVVGVFTVPDKDGKADPLGLEAEKDGVPVFKYSRWRAKGQALPDVVAKYQ   74 (203)
T ss_dssp             CEEEEECCHHHHHHHHHHHHHT------TCEEEEEEECCCCSSCCCHHHHHHHHHTCCEEECSCCEETTEECHHHHHHHH
T ss_pred             CEEEEEcCCHHHHHHHHHHHHC------CCcEEEEEcCCCcCcCCChhhhhHHhcCCcccccccccccccccHHHHHHHH
Confidence            69999998763  566666542      37999999987653 2468899999999999887632  2223456777776


Q ss_pred             --CCcEEEEeccCCCCcCchhhhhhhhhhhhhccCCCccccccccCCHhHHhhcCCCeeEeCCCCCCCCCCCcHHHHHHH
Q 021895          204 --NTDFLVLARYMQPVPLQKEAYLGYKLLESLSSKGSLTSYFNMILSGKFLRSYGKDVINIHHGLLPSFKGGKPAKQVGC  281 (306)
Q Consensus       204 --~~D~vVlA~ym~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~~~l~~~~~~iINiHpsLLP~f~Ga~p~~~A~~  281 (306)
                        ++|++|++||++                              |+++++++.++.+++|+|||+||.|||++|++||+.
T Consensus        75 ~~~~Dliv~~~~~~------------------------------ii~~~~l~~~~~g~iN~H~slLP~yrG~~pi~wai~  124 (203)
T d2bw0a2          75 ALGAELNVLPFCSQ------------------------------FIPMEIISAPRHGSIIYHPSLLPRHRGASAINWTLI  124 (203)
T ss_dssp             TTCCSEEEESSCSS------------------------------CCCHHHHTCSTTCEEEEESSCTTTTBSSCHHHHHHH
T ss_pred             HhCCCceEEeecch------------------------------hhhhhhhhhhhhHhhhhhhcccccccccceeeeeec
Confidence              899999999999                              999999999999999999999999999999999966


Q ss_pred             HHh
Q 021895          282 FTF  284 (306)
Q Consensus       282 ~~~  284 (306)
                      ..-
T Consensus       125 ~g~  127 (203)
T d2bw0a2         125 HGD  127 (203)
T ss_dssp             TTC
T ss_pred             ccc
Confidence            543

>d1zpva1 d.58.18.7 (A:1-83) UPF0237 protein SP0238 {Streptococcus pneumoniae [TaxId: 1313]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: SP0238-like
domain: UPF0237 protein SP0238
species: Streptococcus pneumoniae [TaxId: 1313]

Probab=99.80  E-value=6.9e-20  Score=139.38  Aligned_cols=73  Identities=25%  Similarity=0.176  Sum_probs=68.7

Q ss_pred             ccEEEEEEcCCccchHHHHHHHHHhcCCeEeEeeeeccCCCCeEEEEEEEEeCCCCCCHHHHHHHHHHHHhhhhcc
Q 021895           41 THGIHVFHCPDEVGIVAKLSECIASRGGNILAADVFVPEKKNVFYSRSEFIFDPIKWPREQMDEDFFKLSKMFNAM  116 (306)
Q Consensus        41 ~k~ILTViGpDRpGIVAaVS~~LAe~G~NIlD~sQ~id~l~G~FfMrmeVdv~~~~~~~eeLreaL~~la~elgl~  116 (306)
                      |++|||++|||||||||+||++|+++||||+|++|+++  ++.|+|++.+++++ ..+.++|+++|+++++++|+.
T Consensus         1 Mk~vitv~g~DrpGiVa~vt~~l~~~g~NI~d~~q~~~--~~~f~~~~~v~~~~-~~~~~~l~~~l~~la~~l~l~   73 (83)
T d1zpva1           1 MKAIITVVGKDKSGIVAGVSGKIAELGLNIDDISQTVL--DEYFTMMAVVSSDE-KQDFTYLRNEFEAFGQTLNVK   73 (83)
T ss_dssp             EEEEEEEEESCCTTHHHHHHHHHHHTTCEEEEEEEEEE--TTEEEEEEEEEESS-CCCHHHHHHHHHHHHHHHTEE
T ss_pred             CeEEEEEEcCCCCCHHHHHHHHHHHCCCeEEEEEeEEe--CCEEEEEEEEEEec-CCCHHHHHHHHHHHHHHcCcE
Confidence            68999999999999999999999999999999999876  78999999999986 678999999999999999974

>d2blna2 c.65.1.1 (A:1-203) Polymyxin resistance protein ArnA, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Formyltransferase
superfamily: Formyltransferase
family: Formyltransferase
domain: Polymyxin resistance protein ArnA, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=99.78  E-value=2.2e-19  Score=156.85  Aligned_cols=116  Identities=21%  Similarity=0.272  Sum_probs=95.5

Q ss_pred             ceEEEEEeCCc--chHHHHHHhhhcCCCCeEEEEEeeCCCCC----CChhHHHHHHhCCCCEEEeCCCCCChHHHHHHHh
Q 021895          129 YKVAVLASKQE--HCLVDFLYGWQEGKLPVEITCVISNHDRG----PNSHVIRFLERHGIPYHYLCAKENEREEELLELV  202 (306)
Q Consensus       129 ~riavl~S~~g--~~L~~ll~~~~~g~l~~~I~~Visn~~~~----~~~~~~~~A~~~gIp~~~~~~k~~~~e~e~~~~v  202 (306)
                      |||+|+++++.  .||++|+++      +.+|++|+|++|+.    -.+++.++|+++|||++....   -.++++.+.+
T Consensus         1 Mkiv~~~~~~~g~~~l~~L~~~------g~~I~~Vvt~~~~~~~~~~~~~~~~~a~~~~i~~~~~~~---~~~~~~~~~i   71 (203)
T d2blna2           1 MKTVVFAYHDMGCLGIEALLAA------GYEISAIFTHTDNPGEKAFYGSVARLAAERGIPVYAPDN---VNHPLWVERI   71 (203)
T ss_dssp             CEEEEEECHHHHHHHHHHHHHT------TCEEEEEECCCC------CCCCHHHHHHHHTCCEECCSC---CCSHHHHHHH
T ss_pred             CeEEEEecCHHHHHHHHHHHHC------CCCEEEEEcCCCCCCcccccCHHHHHHHHcCCcceeccc---ccchhhhhhh
Confidence            68999998763  688888763      37999999987652    125689999999999987542   1245566777


Q ss_pred             c--CCcEEEEeccCCCCcCchhhhhhhhhhhhhccCCCccccccccCCHhHHhhcCCCeeEeCCCCCCCCCCCcHHHHHH
Q 021895          203 Q--NTDFLVLARYMQPVPLQKEAYLGYKLLESLSSKGSLTSYFNMILSGKFLRSYGKDVINIHHGLLPSFKGGKPAKQVG  280 (306)
Q Consensus       203 ~--~~D~vVlA~ym~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~~~l~~~~~~iINiHpsLLP~f~Ga~p~~~A~  280 (306)
                      +  ++|+++++||++                              |+++++++.++.++||+|||+||.|||.+|+.||+
T Consensus        72 ~~~~~Dlii~~g~~~------------------------------ii~~~il~~~~~~~iN~H~slLP~yrG~~p~~wai  121 (203)
T d2blna2          72 AQLSPDVIFSFYYRH------------------------------LIYDEILQLAPAGAFNLHGSLLPKYRGRAPLNWVL  121 (203)
T ss_dssp             HHTCCSEEEEESCCS------------------------------CCCHHHHTTCTTCEEEEESSCTTTTEESCHHHHHH
T ss_pred             hhhcccceeeeeccc------------------------------chhcccchhhHHHHHHHhhhcchhhhhhhhhhhhh
Confidence            6  999999999999                              99999999999999999999999999999999996


Q ss_pred             HHH
Q 021895          281 CFT  283 (306)
Q Consensus       281 ~~~  283 (306)
                      .-.
T Consensus       122 ~~g  124 (203)
T d2blna2         122 VNG  124 (203)
T ss_dssp             HTT
T ss_pred             hcc
Confidence            543

>d1fmta2 c.65.1.1 (A:1-206) Methionyl-tRNAfmet formyltransferase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Formyltransferase
superfamily: Formyltransferase
family: Formyltransferase
domain: Methionyl-tRNAfmet formyltransferase
species: Escherichia coli [TaxId: 562]

Probab=99.78  E-value=8.4e-19  Score=152.08  Aligned_cols=118  Identities=24%  Similarity=0.319  Sum_probs=95.9

Q ss_pred             CCceEEEEEeCCc--chHHHHHHhhhcCCCCeEEEEEeeCCCCCC-------ChhHHHHHHhCCCCEEEeCCCCCChHHH
Q 021895          127 PKYKVAVLASKQE--HCLVDFLYGWQEGKLPVEITCVISNHDRGP-------NSHVIRFLERHGIPYHYLCAKENEREEE  197 (306)
Q Consensus       127 ~~~riavl~S~~g--~~L~~ll~~~~~g~l~~~I~~Visn~~~~~-------~~~~~~~A~~~gIp~~~~~~k~~~~e~e  197 (306)
                      .++||+|++|+..  .+|+.|++.      ..+|++|||.+|+..       ......++..+++|+......   .+++
T Consensus         2 ~~mKI~f~G~~~~~~~~L~~L~~~------~~~i~~Vit~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~   72 (206)
T d1fmta2           2 ESLRIIFAGTPDFAARHLDALLSS------GHNVVGVFTQPDRPAGRGKKLMPSPVKVLAEEKGLPVFQPVSL---RPQE   72 (206)
T ss_dssp             CCCEEEEEECSHHHHHHHHHHHHT------TCEEEEEECCCCBC------CBCCHHHHHHHHTTCCEECCSCS---CSHH
T ss_pred             CCcEEEEECCCHHHHHHHHHHHhC------CCCEEEEEeCCCcccccCccccccchhhhhhccCccccccccc---cchh
Confidence            4789999998753  678877753      369999999875521       246678999999999886532   2345


Q ss_pred             HHHHhc--CCcEEEEeccCCCCcCchhhhhhhhhhhhhccCCCccccccccCCHhHHhhcCCCeeEeCCCCCCCCCCCcH
Q 021895          198 LLELVQ--NTDFLVLARYMQPVPLQKEAYLGYKLLESLSSKGSLTSYFNMILSGKFLRSYGKDVINIHHGLLPSFKGGKP  275 (306)
Q Consensus       198 ~~~~v~--~~D~vVlA~ym~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~~~l~~~~~~iINiHpsLLP~f~Ga~p  275 (306)
                      ..+.++  ++|++|++||++                              |+++++++.++.++||+|||+||.|||++|
T Consensus        73 ~~~~~~~~~~d~~v~~~~~~------------------------------ii~~~il~~~k~g~iN~Hps~LP~yRG~~p  122 (206)
T d1fmta2          73 NQQLVAELQADVMVVVAYGL------------------------------ILPKAVLEMPRLGCINVHGSLLPRWRGAAP  122 (206)
T ss_dssp             HHHHHHHTTCSEEEEESCCS------------------------------CCCHHHHHSSTTCEEEEESSSTTTTBSSCH
T ss_pred             hHHHHhhhcceEEEeecccc------------------------------ccchhhHhcCCCCeeecCchhhHhhhhhhh
Confidence            556665  899999999999                              999999999999999999999999999999


Q ss_pred             HHHHHHHH
Q 021895          276 AKQVGCFT  283 (306)
Q Consensus       276 ~~~A~~~~  283 (306)
                      +.||+.-.
T Consensus       123 i~wai~ng  130 (206)
T d1fmta2         123 IQRSLWAG  130 (206)
T ss_dssp             HHHHHHHT
T ss_pred             hhhHHHcC
Confidence            99996543

>d1u8sa1 d.58.18.5 (A:2-87) putative transcriptional repressor VC2159 {Vibrio cholerae [TaxId: 666]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: Glycine cleavage system transcriptional repressor
domain: putative transcriptional repressor VC2159
species: Vibrio cholerae [TaxId: 666]

Probab=99.68  E-value=4.3e-17  Score=124.99  Aligned_cols=74  Identities=14%  Similarity=0.130  Sum_probs=67.4

Q ss_pred             cccEEEEEEcCCccchHHHHHHHHHhcCCeEeEeeeeccCCCCeEEEEEEEEeCCCCCCHHHHHHHHHHHHhhhhccc
Q 021895           40 LTHGIHVFHCPDEVGIVAKLSECIASRGGNILAADVFVPEKKNVFYSRSEFIFDPIKWPREQMDEDFFKLSKMFNAMR  117 (306)
Q Consensus        40 ~~k~ILTViGpDRpGIVAaVS~~LAe~G~NIlD~sQ~id~l~G~FfMrmeVdv~~~~~~~eeLreaL~~la~elgl~~  117 (306)
                      ++++|||++|+|||||||+||++|+++||||+|++|+..  +|.|.|++.|+.++.  +.++|+++|+++++++|+..
T Consensus         3 ~~~~vitv~G~DrpGiva~vt~~l~~~g~NI~d~~~~~~--~~~~~~~~~v~~~~~--~~~~l~~~L~~l~~~l~l~i   76 (86)
T d1u8sa1           3 TQHLVITAVGTDRPGICNEVVRLVTQAGCNIIDSRIAMF--GKEFTLLMLISGSPS--NITRVETTLPLLGQQHDLIT   76 (86)
T ss_dssp             CEEEEEEEEEECCTTHHHHHHHHHHHTTCEEEEEEEEEE--TTEEEEEEEEEECHH--HHHHHHHHHHHHHHHHTCEE
T ss_pred             ccEEEEEEEeCCCChHHHHHHHHHHHCCCeEEEeEeEEE--CCeeEEEEEEEcCcc--cHHHHHHHHHHHHHHhCCEE
Confidence            467999999999999999999999999999999999876  789999999998753  68999999999999999743

>d1u8sa2 d.58.18.5 (A:88-180) putative transcriptional repressor VC2159 {Vibrio cholerae [TaxId: 666]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: Glycine cleavage system transcriptional repressor
domain: putative transcriptional repressor VC2159
species: Vibrio cholerae [TaxId: 666]

Probab=99.67  E-value=1.3e-16  Score=123.94  Aligned_cols=76  Identities=17%  Similarity=0.171  Sum_probs=65.7

Q ss_pred             cEEEEEEcCCccchHHHHHHHHHhcCCeEeEeeeec------cCCCCeEEEEEEEEeCCCCCCHHHHHHHHHHHHhhhhc
Q 021895           42 HGIHVFHCPDEVGIVAKLSECIASRGGNILAADVFV------PEKKNVFYSRSEFIFDPIKWPREQMDEDFFKLSKMFNA  115 (306)
Q Consensus        42 k~ILTViGpDRpGIVAaVS~~LAe~G~NIlD~sQ~i------d~l~G~FfMrmeVdv~~~~~~~eeLreaL~~la~elgl  115 (306)
                      .+-++|.|+||||||++||++|+++|+||.+++|++      +...+.|+|++++++|+ ..+.++|+++|+++++++++
T Consensus         6 tv~v~v~g~DrpGIV~~it~~la~~~~nI~~l~t~~~~a~~~~~~~~~f~~~~~~~~p~-~~~~~~l~~~l~~l~~~l~v   84 (93)
T d1u8sa2           6 TVEVYVESDDKLGLTEKFTQFFAQRQIGMASLSAQTISKDKLHSEQNQFHIAISARVDS-GCNLMQLQEEFDALCTALDV   84 (93)
T ss_dssp             EEEEEEEESCCTTHHHHHHHHHHHTTCCEEEEEEEEEC--------CEEEEEEEEEECT-TSCHHHHHHHHHHHHHHHTC
T ss_pred             EEEEEEEECCCCCHHHHHHHHHHHcCCCchhhhcccccccCCcccCccEEEEEEEEcCc-cccHHHHHHHHHHHHHHcee
Confidence            467889999999999999999999999999999864      33456899999999997 68999999999999999997


Q ss_pred             ccc
Q 021895          116 MRS  118 (306)
Q Consensus       116 ~~~  118 (306)
                      .|+
T Consensus        85 ~~s   87 (93)
T d1u8sa2          85 QGS   87 (93)
T ss_dssp             EEE
T ss_pred             EEE
Confidence            553

>d1zgha2 c.65.1.1 (A:1-164) Methionyl-tRNAfmet formyltransferase {Clostridium thermocellum [TaxId: 1515]}

class: Alpha and beta proteins (a/b)
fold: Formyltransferase
superfamily: Formyltransferase
family: Formyltransferase
domain: Methionyl-tRNAfmet formyltransferase
species: Clostridium thermocellum [TaxId: 1515]

Probab=98.99  E-value=3.4e-10  Score=95.36  Aligned_cols=78  Identities=17%  Similarity=0.326  Sum_probs=59.9

Q ss_pred             hHHHHHHhCCCCEEEeCCCCCChHHHHHHHhc--CCcEEEEeccCCCCcCchhhhhhhhhhhhhccCCCccccccccCCH
Q 021895          172 HVIRFLERHGIPYHYLCAKENEREEELLELVQ--NTDFLVLARYMQPVPLQKEAYLGYKLLESLSSKGSLTSYFNMILSG  249 (306)
Q Consensus       172 ~~~~~A~~~gIp~~~~~~k~~~~e~e~~~~v~--~~D~vVlA~ym~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~  249 (306)
                      ....++++.+..+.+...+. ..+ ...+.++  ++|++|++||++                              |+++
T Consensus        15 ~~~~~~k~~~~~~~~~~~~n-~~~-~~~~~i~~~~~D~ii~~g~~~------------------------------ii~~   62 (164)
T d1zgha2          15 NAQKFKKENESKYNTTIITN-KDE-LTFEKVKLINPEYILFPHWSW------------------------------IIPK   62 (164)
T ss_dssp             HHHHHHHHTTTTEEEEEECS-GGG-CCHHHHHHHCCSEEEESSCCS------------------------------CCCH
T ss_pred             HHHHHHHHhcCccceeeecC-hhH-HHHHHHHhcCCCEEEEeCccc------------------------------ccCH
Confidence            46677888888877654221 111 1122333  999999999999                              9999


Q ss_pred             hHHhhcCCCeeEeCCCCCCCCCCCcHHHHHHHHH
Q 021895          250 KFLRSYGKDVINIHHGLLPSFKGGKPAKQVGCFT  283 (306)
Q Consensus       250 ~~l~~~~~~iINiHpsLLP~f~Ga~p~~~A~~~~  283 (306)
                      +++..|  ++||+|||+||.|||.+|+.||+...
T Consensus        63 ~il~~~--~~in~H~s~LP~yRG~~p~~wai~~~   94 (164)
T d1zgha2          63 EIFENF--TCVVFHMTDLPFGRGGSPLQNLIERG   94 (164)
T ss_dssp             HHHTTS--CEEEEESSCTTTTEESCHHHHHHHTT
T ss_pred             HHHhhC--CCccCCCCchhccccccccccccccc
Confidence            999976  59999999999999999999996553

>d1y7pa2 d.58.18.12 (A:2-78) Hypothetical protein AF1403, N-terminal domain {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: AF1403 N-terminal domain-like
domain: Hypothetical protein AF1403, N-terminal domain
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=98.02  E-value=1.1e-06  Score=65.43  Aligned_cols=63  Identities=22%  Similarity=0.214  Sum_probs=42.4

Q ss_pred             EEEEEcCCccchHHHHHHHHHhcCCeEeEeeeeccCCCCe--EEEEEEEEeCCCCCCHHHHHHHHHHH
Q 021895           44 IHVFHCPDEVGIVAKLSECIASRGGNILAADVFVPEKKNV--FYSRSEFIFDPIKWPREQMDEDFFKL  109 (306)
Q Consensus        44 ILTViGpDRpGIVAaVS~~LAe~G~NIlD~sQ~id~l~G~--FfMrmeVdv~~~~~~~eeLreaL~~l  109 (306)
                      -|.+.|.||+|+.+.|++.++++|+||..++|... ..|.  ..|.++++..+  .+++.+-+.|..+
T Consensus         3 ~i~i~~~Dr~GlL~di~~~ia~~~~NI~~i~~~~~-~~g~~~~~~~i~v~~~~--~~l~~ll~kL~~l   67 (77)
T d1y7pa2           3 GLRIIAENKIGVLRDLTTIIAEEGGNITFAQTFLI-KHGEHEGKALIYFEIEG--GDFEKILERVKTF   67 (77)
T ss_dssp             EEEEEEECCTTHHHHHHHHCC----CEEEEEEEEC-CSSTTTTEEEEEEEECS--SCHHHHHHHHHTC
T ss_pred             eEEEEEecCCChHHHHHHHHHHcCCCeEEEEeecc-CCCeEEEEEEEEEEcCc--ccHHHHHHHHHcC
Confidence            37899999999999999999999999999998753 2333  44455555432  3567776666653

>d1ygya3 d.58.18.1 (A:452-529) Phosphoglycerate dehydrogenase, regulatory (C-terminal) domain {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: Phosphoglycerate dehydrogenase, regulatory (C-terminal) domain
domain: Phosphoglycerate dehydrogenase, regulatory (C-terminal) domain
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=97.97  E-value=1.8e-05  Score=58.71  Aligned_cols=64  Identities=14%  Similarity=0.053  Sum_probs=48.5

Q ss_pred             EEEEEEcCCccchHHHHHHHHHhcCCeEeEeeeeccCCCCeEEEEEEEEeCCCCCCHHHHHHHHHHHH
Q 021895           43 GIHVFHCPDEVGIVAKLSECIASRGGNILAADVFVPEKKNVFYSRSEFIFDPIKWPREQMDEDFFKLS  110 (306)
Q Consensus        43 ~ILTViGpDRpGIVAaVS~~LAe~G~NIlD~sQ~id~l~G~FfMrmeVdv~~~~~~~eeLreaL~~la  110 (306)
                      ..|.+.=.|+||+++.|++.|+++|+||..++.......|.-.|.+++|-   .. .+++.+++.++-
T Consensus         4 ~~L~i~~~D~PGvi~~I~~~l~~~~iNI~~m~~~~~~~g~~a~~vi~vD~---~~-~~~vl~~I~~~~   67 (78)
T d1ygya3           4 INLIIHYVDRPGALGKIGTLLGTAGVNIQAAQLSEDAEGPGATILLRLDQ---DV-PDDVRTAIAAAV   67 (78)
T ss_dssp             EEEEEEESCCTTHHHHHHHHHHHTTCCEEEEEEEECSSSSCEEEEEEESS---CC-CHHHHHHHHHHH
T ss_pred             eEEEEEeCCcCCHHHHHHHHHHhcCcChhhheeeecCCCCeEEEEEEcCC---Cc-cHHHHHHHHcCC
Confidence            45677779999999999999999999999987655555677777777752   22 366666666543

>d1sc6a3 d.58.18.1 (A:327-410) Phosphoglycerate dehydrogenase, regulatory (C-terminal) domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: Phosphoglycerate dehydrogenase, regulatory (C-terminal) domain
domain: Phosphoglycerate dehydrogenase, regulatory (C-terminal) domain
species: Escherichia coli [TaxId: 562]

Probab=97.65  E-value=3.1e-05  Score=57.89  Aligned_cols=49  Identities=14%  Similarity=0.116  Sum_probs=35.8

Q ss_pred             cEEEEEEcCCccchHHHHHHHHHhcCCeEeEeeeeccCCCCeEEEEEEEEe
Q 021895           42 HGIHVFHCPDEVGIVAKLSECIASRGGNILAADVFVPEKKNVFYSRSEFIF   92 (306)
Q Consensus        42 k~ILTViGpDRpGIVAaVS~~LAe~G~NIlD~sQ~id~l~G~FfMrmeVdv   92 (306)
                      ...|++.=.|+||++|+|++.|+++|+||.++..... .++-+. ++.++.
T Consensus        11 ~~rl~i~~~d~PGvla~I~~~l~~~~iNI~~~~~~~~-~~~~~a-~~~i~~   59 (84)
T d1sc6a3          11 GRRLMHIHENRPGVLTALNKIFAEQGVNIAAQYLQTS-AQMGYV-VIDIEA   59 (84)
T ss_dssp             SEEEEEEEESCTTHHHHHHHHHHHTTCEEEEEEEEEC-SSEEEE-EEEEEC
T ss_pred             CeEEEEEeCCcCCHHHHHHHHHHHcCCCHHHhccccC-CCCcEE-EEEEEC
Confidence            3566666799999999999999999999999876533 233344 344443

>d2pc6a2 d.58.18.6 (A:1-77) Acetolactate synthase small subunit, IlvH {Nitrosomonas europaea [TaxId: 915]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: IlvH-like
domain: Acetolactate synthase small subunit, IlvH
species: Nitrosomonas europaea [TaxId: 915]

Probab=97.61  E-value=4.7e-05  Score=57.17  Aligned_cols=66  Identities=18%  Similarity=0.100  Sum_probs=52.9

Q ss_pred             ccEEEEEEcCCccchHHHHHHHHHhcCCeEeEeeeeccCCCCeEEEEEEEEeCCCCCCHHHHHHHHHH
Q 021895           41 THGIHVFHCPDEVGIVAKLSECIASRGGNILAADVFVPEKKNVFYSRSEFIFDPIKWPREQMDEDFFK  108 (306)
Q Consensus        41 ~k~ILTViGpDRpGIVAaVS~~LAe~G~NIlD~sQ~id~l~G~FfMrmeVdv~~~~~~~eeLreaL~~  108 (306)
                      |+..|++.-.|+||+.++||+.++.+|+||..++.--....|..-|.+.++.++  ...+++...|++
T Consensus         1 Mk~tisv~veN~pGvL~Ris~lF~rRg~NI~Sltv~~te~~~iSRmtivv~~~~--~~i~qi~kQL~K   66 (77)
T d2pc6a2           1 MRHIISLLMENEAGALSRVAGLFSARGYNIESLSVAPTEDPTLSRMTLVTNGPD--EIVEQITKQLNK   66 (77)
T ss_dssp             EEEEEEEEEECSTTHHHHHHHHHHHHTCCCCEEEEEECSSTTEEEEEEEEEECH--HHHHHHHHHHHH
T ss_pred             CcEEEEEEEECCccHHHHHHHHHhccCcceEEEEEeccCCCCeEEEEEEEECCH--HHHHHHHHHHhC
Confidence            678889999999999999999999999999999887667778888888887543  234555555544

>d2fgca2 d.58.18.6 (A:27-104) Acetolactate synthase small subunit, IlvH {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: IlvH-like
domain: Acetolactate synthase small subunit, IlvH
species: Thermotoga maritima [TaxId: 2336]

Probab=97.55  E-value=0.00013  Score=54.83  Aligned_cols=68  Identities=21%  Similarity=0.184  Sum_probs=54.7

Q ss_pred             cccEEEEEEcCCccchHHHHHHHHHhcCCeEeEeeeeccCCCCeEEEEEEEEeCCCCCCHHHHHHHHHHH
Q 021895           40 LTHGIHVFHCPDEVGIVAKLSECIASRGGNILAADVFVPEKKNVFYSRSEFIFDPIKWPREQMDEDFFKL  109 (306)
Q Consensus        40 ~~k~ILTViGpDRpGIVAaVS~~LAe~G~NIlD~sQ~id~l~G~FfMrmeVdv~~~~~~~eeLreaL~~l  109 (306)
                      +.+++|++.-.|+||+.++||+.++.+|.||..++.-.....|.--|.+.++.++  ...+++...|+++
T Consensus         1 mk~~tisvlv~n~pGvL~Ri~~lF~rRg~NI~SL~v~~te~~~iSR~tivv~g~~--~~i~qi~kQl~Kl   68 (78)
T d2fgca2           1 IREHLVSMLVHNKPGVMRKVANLFARRGFNISSITVGESETPGLSRLVIMVKGDD--KTIEQIEKQAYKL   68 (78)
T ss_dssp             CEEEEEEEEEECCTTHHHHHHHHHHTTTCEEEEEEEEECSSTTEEEEEEEEEECT--THHHHHHHHHTTS
T ss_pred             CceEEEEEEEeCCCcHHHHHHHHHhhCCcceEEEEEeecCCCCeEEEEEEEEcCH--HHHHHHHHHHhCC
Confidence            3578999999999999999999999999999999877667778877888887654  2456666665543

>d2f1fa1 d.58.18.6 (A:2-77) Acetolactate synthase small subunit, IlvH {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: IlvH-like
domain: Acetolactate synthase small subunit, IlvH
species: Escherichia coli [TaxId: 562]

Probab=96.97  E-value=0.00064  Score=50.64  Aligned_cols=64  Identities=19%  Similarity=0.178  Sum_probs=46.5

Q ss_pred             EEEEEEcCCccchHHHHHHHHHhcCCeEeEeeeeccCCCCeEEEEEEEEeCCCCCCHHHHHHHHHH
Q 021895           43 GIHVFHCPDEVGIVAKLSECIASRGGNILAADVFVPEKKNVFYSRSEFIFDPIKWPREQMDEDFFK  108 (306)
Q Consensus        43 ~ILTViGpDRpGIVAaVS~~LAe~G~NIlD~sQ~id~l~G~FfMrmeVdv~~~~~~~eeLreaL~~  108 (306)
                      ..|++.=.|+||+.++||+.++.+|+||..++.-.....|.--|.+.+..++  ...+++...|++
T Consensus         2 htlsv~v~N~~GVL~RisglF~rRg~NI~Sl~v~~te~~~iSR~tivv~~~~--~~i~qi~kQL~K   65 (76)
T d2f1fa1           2 RILSVLLENESGALSRVIGLFSQRGYNIESLTVAPTDDPTLSRMTIQTVGDE--KVLEQIEKQLHK   65 (76)
T ss_dssp             EEEEEEEECCTTHHHHHHHHHHTTTCCCSEEEEEECSCSSEEEEEEEEESCH--HHHHHHHHHHHH
T ss_pred             EEEEEEEECCCcHHHHHHHHHHhcCcceEEEEEcccCCCCeeEEEEEEECCH--HHHHHHHHHHhC
Confidence            4677778999999999999999999999998876555666666666665332  234444444444

>d2f06a2 d.58.18.11 (A:1-70) Hypothetical protein BT0572 {Bacteroides thetaiotaomicron [TaxId: 818]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: BT0572-like
domain: Hypothetical protein BT0572
species: Bacteroides thetaiotaomicron [TaxId: 818]

Probab=96.74  E-value=0.0028  Score=46.01  Aligned_cols=45  Identities=13%  Similarity=0.110  Sum_probs=36.4

Q ss_pred             EEEEcCCccchHHHHHHHHHhcCCeEeEeeeeccCCCCeEEEEEEEE
Q 021895           45 HVFHCPDEVGIVAKLSECIASRGGNILAADVFVPEKKNVFYSRSEFI   91 (306)
Q Consensus        45 LTViGpDRpGIVAaVS~~LAe~G~NIlD~sQ~id~l~G~FfMrmeVd   91 (306)
                      |+|.-.||||..++|++.|+++|+||..++.....+.|.  .|+.++
T Consensus         6 isV~~eNkpG~L~~v~~~~~~~~inI~sl~v~~t~~~~i--~Riiv~   50 (70)
T d2f06a2           6 LSIFLENKSGRLTEVTEVLAKENINLSALCIAENADFGI--LRGIVS   50 (70)
T ss_dssp             EEEEECSSSSHHHHHHHHHHHTTCCEEEEEEEECSSCEE--EEEEES
T ss_pred             EEEEEeCCCcHHHHHHHHHHHCCCCEEEEEEeecCCCCE--EEEEEC
Confidence            688889999999999999999999999999875543333  455554

>d2f06a1 d.58.18.11 (A:71-141) Hypothetical protein BT0572 {Bacteroides thetaiotaomicron [TaxId: 818]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: BT0572-like
domain: Hypothetical protein BT0572
species: Bacteroides thetaiotaomicron [TaxId: 818]

Probab=96.74  E-value=0.0028  Score=45.82  Aligned_cols=57  Identities=19%  Similarity=0.152  Sum_probs=44.0

Q ss_pred             EEEEEcCCccchHHHHHHHHHhcCCeEeEeeeeccCCCCeEEEEEEEEeCCCCCCHHHHHHHHHH
Q 021895           44 IHVFHCPDEVGIVAKLSECIASRGGNILAADVFVPEKKNVFYSRSEFIFDPIKWPREQMDEDFFK  108 (306)
Q Consensus        44 ILTViGpDRpGIVAaVS~~LAe~G~NIlD~sQ~id~l~G~FfMrmeVdv~~~~~~~eeLreaL~~  108 (306)
                      ||.|.-||+||-.++|++.|+++|+||..+..+...  +.=.+++.++      +.+.-++.|++
T Consensus         1 ViaV~v~d~pG~L~~v~~~L~~~~InI~~~y~~~~~--~~~~~vl~vd------d~~~a~~~L~~   57 (71)
T d2f06a1           1 VVGISCPNVPGALAKVLGFLSAEGVFIEYMYSFANN--NVANVVIRPS------NMDKCIEVLKE   57 (71)
T ss_dssp             EEEEEEESSTTHHHHHHHHHHHTTCCEEEEEEEEET--TEEEEEEEES------CHHHHHHHHHH
T ss_pred             CEEEEecCCccHHHHHHHHHHHCCCCEEEEEEEcCC--CcEEEEEEEC------CHHHHHHHHHH
Confidence            578888999999999999999999999999888653  3334555553      35666776664

>d1nvmb1 c.2.1.3 (B:1-131,B:287-312) Acetaldehyde dehydrogenase (acylating) {Pseudomonas sp. [TaxId: 306]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Acetaldehyde dehydrogenase (acylating)
species: Pseudomonas sp. [TaxId: 306]

Probab=95.55  E-value=0.019  Score=46.77  Aligned_cols=72  Identities=24%  Similarity=0.342  Sum_probs=49.8

Q ss_pred             CCceEEEEEeCCc-c-hHHHHHHhhhcCCCCeEEEEEeeCCCCCCChhHHHHHHhCCCCEEEeCCCCCChHHHHHHHhc-
Q 021895          127 PKYKVAVLASKQE-H-CLVDFLYGWQEGKLPVEITCVISNHDRGPNSHVIRFLERHGIPYHYLCAKENEREEELLELVQ-  203 (306)
Q Consensus       127 ~~~riavl~S~~g-~-~L~~ll~~~~~g~l~~~I~~Visn~~~~~~~~~~~~A~~~gIp~~~~~~k~~~~e~e~~~~v~-  203 (306)
                      +|.||||+++|.- . -+..+|..  .+  ..|+++|.+..   +.+..+.+|+++|+|+.+      ...+++++... 
T Consensus         3 kkirvaIIGaG~ig~~~~~~~l~~--~~--~~el~avas~~---~~~~~~~~a~~~~i~~~~------~~~d~l~~~~~~   69 (157)
T d1nvmb1           3 QKLKVAIIGSGNIGTDLMIKVLRN--AK--YLEMGAMVGID---AASDGLARAQRMGVTTTY------AGVEGLIKLPEF   69 (157)
T ss_dssp             SCEEEEEECCSHHHHHHHHHHHHH--CS--SEEEEEEECSC---TTCHHHHHHHHTTCCEES------SHHHHHHHSGGG
T ss_pred             CCcEEEEEcCcHHHHHHHHHHHhh--CC--cceEEEEEecc---hhccchhhhhhcCCcccc------cceeeeeecccc
Confidence            5789999998852 3 23344432  12  37999998855   445678999999999976      12355666554 


Q ss_pred             -CCcEEEEe
Q 021895          204 -NTDFLVLA  211 (306)
Q Consensus       204 -~~D~vVlA  211 (306)
                       +.|++..|
T Consensus        70 ~~iDiVf~A   78 (157)
T d1nvmb1          70 ADIDFVFDA   78 (157)
T ss_dssp             GGEEEEEEC
T ss_pred             cccCEEEEc
Confidence             78999885

>d2hmfa3 d.58.18.10 (A:304-403) Aspartokinase {Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: Aspartokinase allosteric domain-like
domain: Aspartokinase
species: Methanococcus jannaschii [TaxId: 2190]

Probab=94.75  E-value=0.05  Score=41.20  Aligned_cols=64  Identities=13%  Similarity=0.176  Sum_probs=45.6

Q ss_pred             cccEEEEEEc---CCccchHHHHHHHHHhcCCeEeEeeeeccCCCCeEEEEEEEEeCCCCCCHHHHHHHHHHHHhhhh
Q 021895           40 LTHGIHVFHC---PDEVGIVAKLSECIASRGGNILAADVFVPEKKNVFYSRSEFIFDPIKWPREQMDEDFFKLSKMFN  114 (306)
Q Consensus        40 ~~k~ILTViG---pDRpGIVAaVS~~LAe~G~NIlD~sQ~id~l~G~FfMrmeVdv~~~~~~~eeLreaL~~la~elg  114 (306)
                      .+-..|++.|   ++++|+.+++-+.|+++|+||.-++|....  -    -+-|-+++     +++.++++.+-+.|+
T Consensus        13 ~nva~IsivG~~m~~~~Gi~arif~~La~~~InV~mIsQ~~Se--~----~Isf~V~~-----~d~~~a~~~L~~~f~   79 (100)
T d2hmfa3          13 KNVALINIFGAGMVGVSGTAARIFKALGEEEVNVILISQGSSE--T----NISLVVSE-----EDVDKALKALKREFG   79 (100)
T ss_dssp             EEEEEEEEEECSSSCHHHHHHHHHHHHHHTTCCEEEEEECCTT--C----CEEEEECS-----TTHHHHHHHHHHHHC
T ss_pred             CCEEEEEEECCCCCCCcchHHHHHHHHHHcCCCHHHeeccCCc--c----eEEEEEeH-----HHHHHHHHHHHHHHH
Confidence            4557899999   699999999999999999999999996431  1    23344443     234555555555554

>d2hmfa2 d.58.18.10 (A:404-470) Aspartokinase {Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: Aspartokinase allosteric domain-like
domain: Aspartokinase
species: Methanococcus jannaschii [TaxId: 2190]

Probab=94.69  E-value=0.066  Score=37.89  Aligned_cols=60  Identities=15%  Similarity=0.065  Sum_probs=43.5

Q ss_pred             EEEEEEc---CCccchHHHHHHHHHhcCCeEeEeeeeccCCCCeEEEEEEEEeCCCCCCHHHHHHHHHHHHhhh
Q 021895           43 GIHVFHC---PDEVGIVAKLSECIASRGGNILAADVFVPEKKNVFYSRSEFIFDPIKWPREQMDEDFFKLSKMF  113 (306)
Q Consensus        43 ~ILTViG---pDRpGIVAaVS~~LAe~G~NIlD~sQ~id~l~G~FfMrmeVdv~~~~~~~eeLreaL~~la~el  113 (306)
                      .+|+++|   .+++|+.+++-+.|+++|+||.-++|...    ...+-+.|+       .++..++++.+-+.|
T Consensus         2 a~vsvvG~gm~~~~gi~arif~~L~~~~InV~mIsq~~S----e~~Is~~V~-------~~d~~~Av~~Lh~~F   64 (67)
T d2hmfa2           2 CVISVVGAGMRGAKGIAGKIFTAVSESGANIKMIAQGSS----EVNISFVID-------EKDLLNCVRKLHEKF   64 (67)
T ss_dssp             EEEEEECTTTTTCTTHHHHHHHHHHHTTCCCCEEEESSC----SSEEEEEEE-------GGGHHHHHHHHHHHH
T ss_pred             EEEEEEeCCCCCCccHHHHHHHHHHHcCCChHHeeecCc----cceEEEEEe-------HHHHHHHHHHHHHHH
Confidence            4789999   58999999999999999999999999532    223334443       245566666665554

>d2qmwa2 d.58.18.3 (A:185-264) Prephenate dehydratase C-terminal domain {Staphylococcus aureus [TaxId: 1280]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: Phenylalanine metabolism regulatory domain
domain: Prephenate dehydratase C-terminal domain
species: Staphylococcus aureus [TaxId: 1280]

Probab=94.27  E-value=0.17  Score=36.76  Aligned_cols=64  Identities=9%  Similarity=-0.009  Sum_probs=44.4

Q ss_pred             EEEEEcCCccchHHHHHHHHHhcCCeEeEeeeecc-CCCCeEEEEEEEEeCCCCCCHHHHHHHHHHHHh
Q 021895           44 IHVFHCPDEVGIVAKLSECIASRGGNILAADVFVP-EKKNVFYSRSEFIFDPIKWPREQMDEDFFKLSK  111 (306)
Q Consensus        44 ILTViGpDRpGIVAaVS~~LAe~G~NIlD~sQ~id-~l~G~FfMrmeVdv~~~~~~~eeLreaL~~la~  111 (306)
                      ++.+.-.|+||-.+.+=+.++++|+|+..+...-. ...+.|...++++  . ..+ +.++++++++.+
T Consensus         4 ~~i~~~~d~pGaL~~vL~~F~~~~INLt~IeSRP~~~~~~~Y~F~id~~--g-~~~-~~~~~~l~~L~~   68 (80)
T d2qmwa2           4 FLITPMHDKPGLLASVLNTFALFNINLSWIESRPLKTQLGMYRFFVQAD--S-AIT-TDIKKVIAILET   68 (80)
T ss_dssp             EEEEESSCCTTHHHHHHHHHHTTTCCEEEEEEEECSSSTTCEEEEEEES--C-CSC-HHHHHHHHHHHH
T ss_pred             EEEEeCCCCCCHHHHHHHHHHHCCCCEEEEEeeecCCCCceEEEEEEEe--c-CCc-HHHHHHHHHHHH
Confidence            44555689999999999999999999999988632 2224454445554  3 223 467777777654

>d1phza1 d.58.18.3 (A:19-115) Phenylalanine hydroxylase N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: Phenylalanine metabolism regulatory domain
domain: Phenylalanine hydroxylase N-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=93.77  E-value=0.1  Score=39.47  Aligned_cols=79  Identities=15%  Similarity=0.083  Sum_probs=52.8

Q ss_pred             cccCCCCCCcccEEEEEEcCCccchHHHHHHHHHhcCCeEeEeeeeccCC-CCeEEEEEEEEeCCCCCCHHHHHHHHHHH
Q 021895           31 PIESSVSPTLTHGIHVFHCPDEVGIVAKLSECIASRGGNILAADVFVPEK-KNVFYSRSEFIFDPIKWPREQMDEDFFKL  109 (306)
Q Consensus        31 ~~~~~~~p~~~k~ILTViGpDRpGIVAaVS~~LAe~G~NIlD~sQ~id~l-~G~FfMrmeVdv~~~~~~~eeLreaL~~l  109 (306)
                      .+|...+ +.++.-|.+..+|+||..+.+=+.++++|+|+..+...-... .+.|.  +.+|++..  ..+.++..++.+
T Consensus         6 ~~e~~~~-~~~ktSl~f~~~~~pGaL~~vL~~f~~~~INLt~IeSRP~~~~~~~Y~--F~id~eg~--~~~~i~~~l~~L   80 (97)
T d1phza1           6 YIEDNSN-QNGAISLIFSLKEEVGALAKVLRLFEENDINLTHIESRPSRLNKDEYE--FFTYLDKR--TKPVLGSIIKSL   80 (97)
T ss_dssp             CCCCCCC-SSCCEEEEEEEECCTTHHHHHHHHHHTTTCCTTSEEEEECSSCTTEEE--EEECBCGG--GHHHHHHHHHHH
T ss_pred             cCcCCCC-CCCcEEEEEEeCCCCCHHHHHHHHHHHCCCCEEEEEeeccCCCCceEE--EEEEcccC--ChHHHHHHHHHH
Confidence            3444443 334455556668999999999999999999999987753222 23333  44455432  347788888888


Q ss_pred             Hhhhh
Q 021895          110 SKMFN  114 (306)
Q Consensus       110 a~elg  114 (306)
                      .+..+
T Consensus        81 ~~~~~   85 (97)
T d1phza1          81 RNDIG   85 (97)
T ss_dssp             HHTTC
T ss_pred             HHhhC
Confidence            76654

>d2cdqa3 d.58.18.10 (A:420-494) Aspartokinase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: Aspartokinase allosteric domain-like
domain: Aspartokinase
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=93.33  E-value=0.095  Score=37.89  Aligned_cols=62  Identities=11%  Similarity=-0.001  Sum_probs=46.4

Q ss_pred             cEEEEEEc--CCccchHHHHHHHHHhcCCeEeEeeeeccCCCCeEEEEEEEEeCCCCCCHHHHHHHHHHHHhhhh
Q 021895           42 HGIHVFHC--PDEVGIVAKLSECIASRGGNILAADVFVPEKKNVFYSRSEFIFDPIKWPREQMDEDFFKLSKMFN  114 (306)
Q Consensus        42 k~ILTViG--pDRpGIVAaVS~~LAe~G~NIlD~sQ~id~l~G~FfMrmeVdv~~~~~~~eeLreaL~~la~elg  114 (306)
                      +.+|+++|  .+++|+.|++-+.|++.|+||.-++|-..    ...+.+.|+       .++..++++.+-+.|-
T Consensus         1 ~a~IsvVG~~~~~~Giaarif~aL~~~~InV~mIsqg~s----e~~Is~vV~-------~~d~~~Av~~Lh~~f~   64 (75)
T d2cdqa3           1 RAIISLIGNVQHSSLILERAFHVLYTKGVNVQMISQGAS----KVNISFIVN-------EAEAEGCVQALHKSFF   64 (75)
T ss_dssp             EEEEEEEECGGGHHHHHHHHHHHHHHHTCCCSEEEECTT----CSEEEEEEE-------HHHHHHHHHHHHHHHH
T ss_pred             CcEEEEECCCCCChhHHHHHHHHHHHcCCceEEEEcCcc----ceEEEEEEe-------HHHHHHHHHHHHHHHh
Confidence            46788998  56799999999999999999999999432    233444443       4667777777766663

>d2cdqa2 d.58.18.10 (A:329-419) Aspartokinase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: Aspartokinase allosteric domain-like
domain: Aspartokinase
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=92.28  E-value=0.14  Score=38.06  Aligned_cols=37  Identities=14%  Similarity=0.091  Sum_probs=33.1

Q ss_pred             cccEEEEEEcC---CccchHHHHHHHHHhcCCeEeEeeee
Q 021895           40 LTHGIHVFHCP---DEVGIVAKLSECIASRGGNILAADVF   76 (306)
Q Consensus        40 ~~k~ILTViGp---DRpGIVAaVS~~LAe~G~NIlD~sQ~   76 (306)
                      .+-..+++.|+   ++||+.++|-+.|+++|+||.-++|.
T Consensus        11 ~~ia~i~v~g~~m~~~~G~~a~if~~La~~~Inv~~Is~S   50 (91)
T d2cdqa2          11 RNVTMLDIASTRMLGQVGFLAKVFSIFEELGISVDVVATS   50 (91)
T ss_dssp             EEEEEEEEECGGGTTCTTHHHHHHHHHHHTTCCEEEEEEE
T ss_pred             CCEEEEEEEeCCCCCCccHHHHHHHHHHHcCCcEEEEEec
Confidence            34578999985   99999999999999999999999883

>d2d13a1 c.26.2.1 (A:2-227) Hypothetical protein PH1257 {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: Adenine nucleotide alpha hydrolase-like
superfamily: Adenine nucleotide alpha hydrolases-like
family: N-type ATP pyrophosphatases
domain: Hypothetical protein PH1257
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=90.73  E-value=0.37  Score=41.32  Aligned_cols=80  Identities=24%  Similarity=0.273  Sum_probs=51.6

Q ss_pred             CceEEEEEeCCcchHHHHHHhhhcCCCCeEEEEEeeCCCCCC--------C-hhHHHHHHhCCCCEEEeCCC-CCChH-H
Q 021895          128 KYKVAVLASKQEHCLVDFLYGWQEGKLPVEITCVISNHDRGP--------N-SHVIRFLERHGIPYHYLCAK-ENERE-E  196 (306)
Q Consensus       128 ~~riavl~S~~g~~L~~ll~~~~~g~l~~~I~~Visn~~~~~--------~-~~~~~~A~~~gIp~~~~~~k-~~~~e-~  196 (306)
                      +.||+|+.||.--+..++..+.+.|   .+|++.++-.+...        + .-+..-|+..|||....... ..+.+ +
T Consensus         3 ~~~V~vl~SGGKDS~lAl~~a~~~G---~eV~~L~t~~~~~~~s~~~h~~~~~ll~~qAealgiPl~~~~~~~~~e~~~~   79 (226)
T d2d13a1           3 LADVAVLYSGGKDSNYALYWALKSG---LRVRYLVSMVSENEESYMYHTPNVELTSLQARALGIPIIKGFTKGEKEKEVE   79 (226)
T ss_dssp             SCEEEEECCSSHHHHHHHHHHHHTT---CEEEEEEEEECCC---------CCTTHHHHHHHHTCCEEEEEC--CTTSHHH
T ss_pred             ceeEEEEecCcHHHHHHHHHHHHcC---CeeEEEEEEecCCCCcCcccCCCHHHHHHHHHhcCCCceEEecCCcchHHHH
Confidence            5799999999865556777777777   68887766432211        1 23566799999998765532 22222 5


Q ss_pred             HHHHHhc--CCcEEEE
Q 021895          197 ELLELVQ--NTDFLVL  210 (306)
Q Consensus       197 e~~~~v~--~~D~vVl  210 (306)
                      ++.+.++  .+|-+|.
T Consensus        80 ~l~~~l~~~~v~~vv~   95 (226)
T d2d13a1          80 DLKNVLEGLKVDGIVA   95 (226)
T ss_dssp             HHHHHHHTBCCSEEEC
T ss_pred             HHHHHHHhcCccceEe
Confidence            5666665  7787664

>d1ni5a1 c.26.2.5 (A:0-226) tRNA-Ile-lysidine synthetase, TilS, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Adenine nucleotide alpha hydrolase-like
superfamily: Adenine nucleotide alpha hydrolases-like
family: PP-loop ATPase
domain: tRNA-Ile-lysidine synthetase, TilS, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=88.56  E-value=0.68  Score=38.19  Aligned_cols=62  Identities=16%  Similarity=0.213  Sum_probs=46.6

Q ss_pred             CCceEEEEEeCCc--chHHHHHHhhhcCCCCeEEEEEeeCCCCCCCh-----hHHHHHHhCCCCEEEeC
Q 021895          127 PKYKVAVLASKQE--HCLVDFLYGWQEGKLPVEITCVISNHDRGPNS-----HVIRFLERHGIPYHYLC  188 (306)
Q Consensus       127 ~~~riavl~S~~g--~~L~~ll~~~~~g~l~~~I~~Visn~~~~~~~-----~~~~~A~~~gIp~~~~~  188 (306)
                      +++||+|-+||..  ..|..+|..++......++.+|..||.-.+++     .+.++|+++|||+++..
T Consensus        12 ~~kkvlva~SGG~DS~~Ll~ll~~~~~~~~~~~l~~~~vdh~~r~~s~~~~~~~~~~~~~~~i~~~i~~   80 (227)
T d1ni5a1          12 TSRQILVAFSGGLDSTVLLHQLVQWRTENPGVALRAIHVHHGLSANADAWVTHCENVCQQWQVPLVVER   80 (227)
T ss_dssp             TCSEEEEECCSBHHHHHHHHHHHHHHTTSTTCEEEEEEECCSCCSSHHHHHHHHHHHHHHTTCCEEEEC
T ss_pred             CCCcEEEEecCcHHHHHHHHHHHHHHHhCCCceEEEEEeCCCCCcchhhhHHHHHHHHhhccCcceeee
Confidence            4569999999974  56666777765544568999999987432333     57889999999999875

>d1zhva2 d.58.18.8 (A:62-127) Hypothetical protein Atu0741 {Agrobacterium tumefaciens [TaxId: 358]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: Atu0741-like
domain: Hypothetical protein Atu0741
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=88.22  E-value=0.39  Score=34.14  Aligned_cols=34  Identities=29%  Similarity=0.473  Sum_probs=29.0

Q ss_pred             EEEEEcC---CccchHHHHHHHHHhcCCeEeEeeeec
Q 021895           44 IHVFHCP---DEVGIVAKLSECIASRGGNILAADVFV   77 (306)
Q Consensus        44 ILTViGp---DRpGIVAaVS~~LAe~G~NIlD~sQ~i   77 (306)
                      .|++.|+   |-+||+|+|++.|+++|+-|--++.|.
T Consensus         4 ~l~v~g~l~l~~vGi~a~i~~~La~a~Is~~~vSty~   40 (66)
T d1zhva2           4 CFKFQGPFAFDETGIVLSVISPLSTNGIGIFVVSTFD   40 (66)
T ss_dssp             EEEECSCCCCSSCCHHHHHHHHHHTTTCCCEEEECSS
T ss_pred             EEEEccCCCchhHhHHHHHHHHHHHCCCCeEEEEeee
Confidence            3566665   899999999999999999998888874

>d1r0ka2 c.2.1.3 (A:3-126,A:265-290) 1-deoxy-D-xylulose-5-phosphate reductoisomerase {Zymomonas mobilis [TaxId: 542]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: 1-deoxy-D-xylulose-5-phosphate reductoisomerase
species: Zymomonas mobilis [TaxId: 542]

Probab=86.25  E-value=1.2  Score=35.67  Aligned_cols=78  Identities=14%  Similarity=0.187  Sum_probs=53.2

Q ss_pred             CceEEEEEeCC--cchHHHHHHhhhcCCCCeEEEEEeeCCCCCCChhHHHHHHhCCCCEEEeCCCCC-----------C-
Q 021895          128 KYKVAVLASKQ--EHCLVDFLYGWQEGKLPVEITCVISNHDRGPNSHVIRFLERHGIPYHYLCAKEN-----------E-  193 (306)
Q Consensus       128 ~~riavl~S~~--g~~L~~ll~~~~~g~l~~~I~~Visn~~~~~~~~~~~~A~~~gIp~~~~~~k~~-----------~-  193 (306)
                      ++||+||+|..  |++.-++++...+   ..+|.++.+++   .-.-..+.|+++.-.+.++..+..           . 
T Consensus         2 pK~I~IlGsTGSIG~~tL~Vi~~~~d---~f~v~~lsa~~---N~~~L~~q~~ef~Pk~v~i~d~~~~~~l~~~~~~~~~   75 (150)
T d1r0ka2           2 PRTVTVLGATGSIGHSTLDLIERNLD---RYQVIALTANR---NVKDLADAAKRTNAKRAVIADPSLYNDLKEALAGSSV   75 (150)
T ss_dssp             CEEEEEETTTSHHHHHHHHHHHHTGG---GEEEEEEEESS---CHHHHHHHHHHTTCSEEEESCGGGHHHHHHHTTTCSS
T ss_pred             CcEEEEECCCcHHHHHHHHHHHcCCC---CcEEEEEEeCC---CHHHHHHHHHhhccccceeccHHHHHHHHHHhhhccc
Confidence            67999999976  4666677765332   38999998886   234577889999988887763210           0 


Q ss_pred             ----hHHHHHHHhc-CCcEEEEe
Q 021895          194 ----REEELLELVQ-NTDFLVLA  211 (306)
Q Consensus       194 ----~e~e~~~~v~-~~D~vVlA  211 (306)
                          .++.+.++.. ++|++|.|
T Consensus        76 ~v~~g~~~l~~~~~~~~D~vv~A   98 (150)
T d1r0ka2          76 EAAAGADALVEAAMMGADWTMAA   98 (150)
T ss_dssp             EEEESHHHHHHHHTSCCSEEEEC
T ss_pred             ccccCccchheecccccceeeee
Confidence                1234444433 78998887

>d1tlta1 c.2.1.3 (A:5-127,A:268-308) Virulence factor MviM {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Virulence factor MviM
species: Escherichia coli [TaxId: 562]

Probab=82.49  E-value=1.1  Score=34.85  Aligned_cols=68  Identities=15%  Similarity=0.184  Sum_probs=42.9

Q ss_pred             CceEEEEEeCC-c-chHHHHHHhhhcCCCCeEEEEEeeCCCCCCChhHHHHHHhCCCCEEEeCCCCCChHHHHHHHhcCC
Q 021895          128 KYKVAVLASKQ-E-HCLVDFLYGWQEGKLPVEITCVISNHDRGPNSHVIRFLERHGIPYHYLCAKENEREEELLELVQNT  205 (306)
Q Consensus       128 ~~riavl~S~~-g-~~L~~ll~~~~~g~l~~~I~~Visn~~~~~~~~~~~~A~~~gIp~~~~~~k~~~~e~e~~~~v~~~  205 (306)
                      |+||+|++.|. + ......+..  .+  ..+|++|.+...    ..+.++++++++|++.       ..+++   +.++
T Consensus         1 Kiri~iIG~G~~g~~~~~~~l~~--~~--~~~i~~v~d~~~----~~~~~~~~~~~~~~~~-------~~~~l---~~~~   62 (164)
T d1tlta1           1 KLRIGVVGLGGIAQKAWLPVLAA--AS--DWTLQGAWSPTR----AKALPICESWRIPYAD-------SLSSL---AASC   62 (164)
T ss_dssp             CEEEEEECCSTHHHHTHHHHHHS--CS--SEEEEEEECSSC----TTHHHHHHHHTCCBCS-------SHHHH---HTTC
T ss_pred             CCEEEEEcCCHHHHHHHHHHHHh--CC--CcEEEEEEechh----Hhhhhhhhcccccccc-------cchhh---hhhc
Confidence            67999999886 2 122233322  12  379998886542    3467889999988521       12333   3589


Q ss_pred             cEEEEecc
Q 021895          206 DFLVLARY  213 (306)
Q Consensus       206 D~vVlA~y  213 (306)
                      |+|+++.-
T Consensus        63 D~V~I~tp   70 (164)
T d1tlta1          63 DAVFVHSS   70 (164)
T ss_dssp             SEEEECSC
T ss_pred             cccccccc
Confidence            99998853

>d2ahra2 c.2.1.6 (A:1-152) Pyrroline-5-carboxylate reductase ProC {Streptococcus pyogenes [TaxId: 1314]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Pyrroline-5-carboxylate reductase ProC
species: Streptococcus pyogenes [TaxId: 1314]

Probab=80.41  E-value=0.87  Score=35.47  Aligned_cols=64  Identities=19%  Similarity=0.450  Sum_probs=40.6

Q ss_pred             ceEEEEEeCCcchHHHHHHhhhcCCCCeEEEEEeeCCCCCCChhHHHHHHhCCCCEEEeCCCCCChHHHHHHHhcCCcEE
Q 021895          129 YKVAVLASKQEHCLVDFLYGWQEGKLPVEITCVISNHDRGPNSHVIRFLERHGIPYHYLCAKENEREEELLELVQNTDFL  208 (306)
Q Consensus       129 ~riavl~S~~g~~L~~ll~~~~~g~l~~~I~~Visn~~~~~~~~~~~~A~~~gIp~~~~~~k~~~~e~e~~~~v~~~D~v  208 (306)
                      +||+|.++|.  -=.+++.+|...  +.+|  .+++++   .....++++++|+.+..      . .+   +.++++|+|
T Consensus         1 MkIg~IG~G~--mG~al~~~l~~~--~~~i--~v~~r~---~~~~~~l~~~~g~~~~~------~-~~---~~~~~~dvI   61 (152)
T d2ahra2           1 MKIGIIGVGK--MASAIIKGLKQT--PHEL--IISGSS---LERSKEIAEQLALPYAM------S-HQ---DLIDQVDLV   61 (152)
T ss_dssp             CEEEEECCSH--HHHHHHHHHTTS--SCEE--EEECSS---HHHHHHHHHHHTCCBCS------S-HH---HHHHTCSEE
T ss_pred             CEEEEEeccH--HHHHHHHHHHhC--CCeE--EEEcCh---HHhHHhhccccceeeec------h-hh---hhhhcccee
Confidence            6899998876  223556666443  4677  456662   34567788888865421      1 22   234589999


Q ss_pred             EEe
Q 021895          209 VLA  211 (306)
Q Consensus       209 VlA  211 (306)
                      ++|
T Consensus        62 ila   64 (152)
T d2ahra2          62 ILG   64 (152)
T ss_dssp             EEC
T ss_pred             eee
Confidence            998