Citrus Sinensis ID: 021911
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
|---|
Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
ID ![]() | Alignment graph ![]() | Length ![]() |
Definition ![]() |
RBH(Q2H) ![]() |
RBH(H2Q) ![]() |
Q cover ![]() |
H cover ![]() |
Identity ![]() |
E-value ![]() |
| Query | 305 | 2.2.26 [Sep-21-2011] | |||||||
| Q94AH9 | 320 | Mediator of RNA polymeras | yes | no | 0.796 | 0.759 | 0.938 | 1e-135 | |
| Q9FEF8 | 308 | Probable mediator of RNA | no | no | 0.796 | 0.788 | 0.938 | 1e-134 | |
| P22509 | 327 | rRNA 2'-O-methyltransfera | yes | no | 0.786 | 0.733 | 0.775 | 1e-108 | |
| P22087 | 321 | rRNA 2'-O-methyltransfera | yes | no | 0.786 | 0.747 | 0.775 | 1e-108 | |
| P35550 | 327 | rRNA 2'-O-methyltransfera | yes | no | 0.786 | 0.733 | 0.775 | 1e-108 | |
| P22232 | 323 | rRNA 2'-O-methyltransfera | N/A | no | 0.770 | 0.727 | 0.785 | 1e-106 | |
| Q8I1F4 | 345 | rRNA 2'-O-methyltransfera | N/A | no | 0.767 | 0.678 | 0.778 | 1e-106 | |
| Q9W1V3 | 344 | rRNA 2'-O-methyltransfera | yes | no | 0.767 | 0.680 | 0.770 | 1e-105 | |
| Q80WS3 | 314 | rRNA/tRNA 2'-O-methyltran | no | no | 0.786 | 0.764 | 0.751 | 1e-104 | |
| A6NHQ2 | 333 | rRNA/tRNA 2'-O-methyltran | no | no | 0.777 | 0.711 | 0.748 | 1e-104 |
| >sp|Q94AH9|MD36A_ARATH Mediator of RNA polymerase II transcription subunit 36a OS=Arabidopsis thaliana GN=MED36A PE=1 SV=2 | Back alignment and function desciption |
|---|
Score = 479 bits (1234), Expect = e-135, Method: Compositional matrix adjust.
Identities = 228/243 (93%), Positives = 236/243 (97%)
Query: 63 MKGGSKVVVEPHRHEGVFIAKGKEDALVTKNLVAGEAVYNEKRISVQNEDGTKVEYRIWN 122
MKGGSKV+VEPHRH GVFIAKGKEDALVTKNLV GEAVYNEKRISVQNEDGTK EYR+WN
Sbjct: 74 MKGGSKVIVEPHRHAGVFIAKGKEDALVTKNLVPGEAVYNEKRISVQNEDGTKTEYRVWN 133
Query: 123 PFRSKLAAAVLGGVDNIWIKPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGR 182
PFRSKLAAA+LGGVDNIWIKPGA+VLYLGAASGTTVSHVSD+VGP G VYAVEFSHRSGR
Sbjct: 134 PFRSKLAAAILGGVDNIWIKPGAKVLYLGAASGTTVSHVSDLVGPEGCVYAVEFSHRSGR 193
Query: 183 DLVNMAKKRTNVIPIIEDARHPAKYRMLVGMVDVIFSDVAQPDQARILALNASYFLKAGG 242
DLVNMAKKRTNVIPIIEDARHPAKYRMLVGMVDVIFSDVAQPDQARILALNASYFLK+GG
Sbjct: 194 DLVNMAKKRTNVIPIIEDARHPAKYRMLVGMVDVIFSDVAQPDQARILALNASYFLKSGG 253
Query: 243 HFVISIKANCIDSTVPAEAVFQSEVKKLQQDQFKPFEQVTLEPFERDHACVVGGYRMPKK 302
HFVISIKANCIDSTVPAEAVFQ+EVKKLQQ+QFKP EQVTLEPFERDHACVVGGYRMPKK
Sbjct: 254 HFVISIKANCIDSTVPAEAVFQTEVKKLQQEQFKPAEQVTLEPFERDHACVVGGYRMPKK 313
Query: 303 QKA 305
KA
Sbjct: 314 PKA 316
|
Involved in pre-rRNA processing. Utilizes the methyl donor S-adenosyl-L-methionine to catalyze the site-specific 2'-hydroxyl methylation of ribose moieties in pre-ribosomal RNA. Site specificity is provided by a guide RNA that base pairs with the substrate. Methylation occurs at a characteristic distance from the sequence involved in base pairing with the guide RNA. Arabidopsis thaliana (taxid: 3702) EC: 2EC: .EC: 1EC: .EC: 1EC: .EC: - |
| >sp|Q9FEF8|MD36B_ARATH Probable mediator of RNA polymerase II transcription subunit 36b OS=Arabidopsis thaliana GN=MED36B PE=1 SV=1 | Back alignment and function description |
|---|
Score = 477 bits (1228), Expect = e-134, Method: Compositional matrix adjust.
Identities = 228/243 (93%), Positives = 235/243 (96%)
Query: 63 MKGGSKVVVEPHRHEGVFIAKGKEDALVTKNLVAGEAVYNEKRISVQNEDGTKVEYRIWN 122
MKGGSKV+VEPHRH GVFIAKGKEDALVTKNLV GEAVYNEKRISVQNEDGTKVEYR+WN
Sbjct: 63 MKGGSKVIVEPHRHAGVFIAKGKEDALVTKNLVPGEAVYNEKRISVQNEDGTKVEYRVWN 122
Query: 123 PFRSKLAAAVLGGVDNIWIKPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGR 182
PFRSKLAAA+LGGVDNIWIKPGA+VLYLGAASGTTVSHVSD+VGP G VYAVEFSHRSGR
Sbjct: 123 PFRSKLAAAILGGVDNIWIKPGAKVLYLGAASGTTVSHVSDLVGPEGCVYAVEFSHRSGR 182
Query: 183 DLVNMAKKRTNVIPIIEDARHPAKYRMLVGMVDVIFSDVAQPDQARILALNASYFLKAGG 242
DLVNMAKKRTNVIPIIEDARHPAKYRMLVGMVDVIFSDVAQPDQARILALNAS+FLK GG
Sbjct: 183 DLVNMAKKRTNVIPIIEDARHPAKYRMLVGMVDVIFSDVAQPDQARILALNASFFLKTGG 242
Query: 243 HFVISIKANCIDSTVPAEAVFQSEVKKLQQDQFKPFEQVTLEPFERDHACVVGGYRMPKK 302
HFVISIKANCIDSTV AEAVFQSEVKKLQQ+QFKP EQVTLEPFERDHACVVGGYRMPKK
Sbjct: 243 HFVISIKANCIDSTVAAEAVFQSEVKKLQQEQFKPAEQVTLEPFERDHACVVGGYRMPKK 302
Query: 303 QKA 305
QK
Sbjct: 303 QKT 305
|
Involved in pre-rRNA processing. Utilizes the methyl donor S-adenosyl-L-methionine to catalyze the site-specific 2'-hydroxyl methylation of ribose moieties in pre-ribosomal RNA. Site specificity is provided by a guide RNA that base pairs with the substrate. Methylation occurs at a characteristic distance from the sequence involved in base pairing with the guide RNA. Arabidopsis thaliana (taxid: 3702) EC: 2 EC: . EC: 1 EC: . EC: 1 EC: . EC: - |
| >sp|P22509|FBRL_RAT rRNA 2'-O-methyltransferase fibrillarin OS=Rattus norvegicus GN=Fbl PE=1 SV=2 | Back alignment and function description |
|---|
Score = 392 bits (1006), Expect = e-108, Method: Compositional matrix adjust.
Identities = 187/241 (77%), Positives = 210/241 (87%), Gaps = 1/241 (0%)
Query: 64 KGGSKVVVEPHRHEGVFIAKGKEDALVTKNLVAGEAVYNEKRISVQNEDGTKVEYRIWNP 123
+ G V+VEPHRHEGVFI +GKEDALVTKNLV GE+VY EKR+S+ D K+EYR WNP
Sbjct: 87 QSGKNVMVEPHRHEGVFICRGKEDALVTKNLVPGESVYGEKRVSISEGDD-KIEYRAWNP 145
Query: 124 FRSKLAAAVLGGVDNIWIKPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRD 183
FRSKLAAA+LGGVD I IKPGA+VLYLGAASGTTVSHVSDIVGP+G+VYAVEFSHRSGRD
Sbjct: 146 FRSKLAAAILGGVDQIHIKPGAKVLYLGAASGTTVSHVSDIVGPDGLVYAVEFSHRSGRD 205
Query: 184 LVNMAKKRTNVIPIIEDARHPAKYRMLVGMVDVIFSDVAQPDQARILALNASYFLKAGGH 243
L+N+AKKRTN+IP+IEDARHP KYRML+ MVDVIF+DVAQPDQ RI+ALNA FL+ GGH
Sbjct: 206 LINLAKKRTNIIPVIEDARHPHKYRMLIAMVDVIFADVAQPDQTRIVALNAHTFLRNGGH 265
Query: 244 FVISIKANCIDSTVPAEAVFQSEVKKLQQDQFKPFEQVTLEPFERDHACVVGGYRMPKKQ 303
FVISIKANCIDST AEAVF SEVKK+QQ+ KP EQ+TLEP+ERDHA VVG YR P K
Sbjct: 266 FVISIKANCIDSTASAEAVFASEVKKMQQENMKPQEQLTLEPYERDHAVVVGVYRPPPKA 325
Query: 304 K 304
K
Sbjct: 326 K 326
|
Involved in pre-rRNA processing. Utilizes the methyl donor S-adenosyl-L-methionine to catalyze the site-specific 2'-hydroxyl methylation of ribose moieties in pre-ribosomal RNA. Site specificity is provided by a guide RNA that base pairs with the substrate. Methylation occurs at a characteristic distance from the sequence involved in base pairing with the guide RNA. Rattus norvegicus (taxid: 10116) EC: 2 EC: . EC: 1 EC: . EC: 1 EC: . EC: - |
| >sp|P22087|FBRL_HUMAN rRNA 2'-O-methyltransferase fibrillarin OS=Homo sapiens GN=FBL PE=1 SV=2 | Back alignment and function description |
|---|
Score = 391 bits (1005), Expect = e-108, Method: Compositional matrix adjust.
Identities = 187/241 (77%), Positives = 210/241 (87%), Gaps = 1/241 (0%)
Query: 64 KGGSKVVVEPHRHEGVFIAKGKEDALVTKNLVAGEAVYNEKRISVQNEDGTKVEYRIWNP 123
+ G V+VEPHRHEGVFI +GKEDALVTKNLV GE+VY EKR+S+ D K+EYR WNP
Sbjct: 81 QSGKNVMVEPHRHEGVFICRGKEDALVTKNLVPGESVYGEKRVSISEGDD-KIEYRAWNP 139
Query: 124 FRSKLAAAVLGGVDNIWIKPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRD 183
FRSKLAAA+LGGVD I IKPGA+VLYLGAASGTTVSHVSDIVGP+G+VYAVEFSHRSGRD
Sbjct: 140 FRSKLAAAILGGVDQIHIKPGAKVLYLGAASGTTVSHVSDIVGPDGLVYAVEFSHRSGRD 199
Query: 184 LVNMAKKRTNVIPIIEDARHPAKYRMLVGMVDVIFSDVAQPDQARILALNASYFLKAGGH 243
L+N+AKKRTN+IP+IEDARHP KYRML+ MVDVIF+DVAQPDQ RI+ALNA FL+ GGH
Sbjct: 200 LINLAKKRTNIIPVIEDARHPHKYRMLIAMVDVIFADVAQPDQTRIVALNAHTFLRNGGH 259
Query: 244 FVISIKANCIDSTVPAEAVFQSEVKKLQQDQFKPFEQVTLEPFERDHACVVGGYRMPKKQ 303
FVISIKANCIDST AEAVF SEVKK+QQ+ KP EQ+TLEP+ERDHA VVG YR P K
Sbjct: 260 FVISIKANCIDSTASAEAVFASEVKKMQQENMKPQEQLTLEPYERDHAVVVGVYRPPPKV 319
Query: 304 K 304
K
Sbjct: 320 K 320
|
Involved in pre-rRNA processing. Utilizes the methyl donor S-adenosyl-L-methionine to catalyze the site-specific 2'-hydroxyl methylation of ribose moieties in pre-ribosomal RNA. Site specificity is provided by a guide RNA that base pairs with the substrate. Methylation occurs at a characteristic distance from the sequence involved in base pairing with the guide RNA. Homo sapiens (taxid: 9606) EC: 2 EC: . EC: 1 EC: . EC: 1 EC: . EC: - |
| >sp|P35550|FBRL_MOUSE rRNA 2'-O-methyltransferase fibrillarin OS=Mus musculus GN=Fbl PE=1 SV=2 | Back alignment and function description |
|---|
Score = 391 bits (1004), Expect = e-108, Method: Compositional matrix adjust.
Identities = 187/241 (77%), Positives = 210/241 (87%), Gaps = 1/241 (0%)
Query: 64 KGGSKVVVEPHRHEGVFIAKGKEDALVTKNLVAGEAVYNEKRISVQNEDGTKVEYRIWNP 123
+ G V+VEPHRHEGVFI +GKEDALVTKNLV GE+VY EKR+S+ D K+EYR WNP
Sbjct: 87 QSGKNVMVEPHRHEGVFICRGKEDALVTKNLVPGESVYGEKRVSISEGDD-KIEYRAWNP 145
Query: 124 FRSKLAAAVLGGVDNIWIKPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRD 183
FRSKLAAA+LGGVD I IKPGA+VLYLGAASGTTVSHVSDIVGP+G+VYAVEFSHRSGRD
Sbjct: 146 FRSKLAAAILGGVDQIHIKPGAKVLYLGAASGTTVSHVSDIVGPDGLVYAVEFSHRSGRD 205
Query: 184 LVNMAKKRTNVIPIIEDARHPAKYRMLVGMVDVIFSDVAQPDQARILALNASYFLKAGGH 243
L+N+AKKRTN+IP+IEDARHP KYRML+ MVDVIF+DVAQPDQ RI+ALNA FL+ GGH
Sbjct: 206 LINLAKKRTNIIPVIEDARHPHKYRMLIAMVDVIFADVAQPDQTRIVALNAHTFLRNGGH 265
Query: 244 FVISIKANCIDSTVPAEAVFQSEVKKLQQDQFKPFEQVTLEPFERDHACVVGGYRMPKKQ 303
FVISIKANCIDST AEAVF SEVKK+QQ+ KP EQ+TLEP+ERDHA VVG YR P K
Sbjct: 266 FVISIKANCIDSTASAEAVFASEVKKMQQENMKPQEQLTLEPYERDHAVVVGVYRPPPKV 325
Query: 304 K 304
K
Sbjct: 326 K 326
|
Involved in pre-rRNA processing. Utilizes the methyl donor S-adenosyl-L-methionine to catalyze the site-specific 2'-hydroxyl methylation of ribose moieties in pre-ribosomal RNA. Site specificity is provided by a guide RNA that base pairs with the substrate. Methylation occurs at a characteristic distance from the sequence involved in base pairing with the guide RNA. Mus musculus (taxid: 10090) EC: 2 EC: . EC: 1 EC: . EC: 1 EC: . EC: - |
| >sp|P22232|FBRL_XENLA rRNA 2'-O-methyltransferase fibrillarin OS=Xenopus laevis GN=fbl PE=2 SV=1 | Back alignment and function description |
|---|
Score = 386 bits (991), Expect = e-106, Method: Compositional matrix adjust.
Identities = 187/238 (78%), Positives = 209/238 (87%), Gaps = 3/238 (1%)
Query: 68 KVVVEPHRHEGVFIAKGKEDALVTKNLVAGEAVYNEKRISVQNEDG-TKVEYRIWNPFRS 126
KV+VEPHRHEG+FI +GKEDALVTKNLV GE+VY EKRISV EDG K EYR WNPFRS
Sbjct: 87 KVIVEPHRHEGIFICRGKEDALVTKNLVPGESVYGEKRISV--EDGEVKTEYRAWNPFRS 144
Query: 127 KLAAAVLGGVDNIWIKPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVN 186
K+AAA+LGGVD I IKPG +VLYLGAASGTTVSHVSD+VGP G+VYAVEFSHRSGRDL+N
Sbjct: 145 KIAAAILGGVDQIHIKPGVKVLYLGAASGTTVSHVSDVVGPEGLVYAVEFSHRSGRDLIN 204
Query: 187 MAKKRTNVIPIIEDARHPAKYRMLVGMVDVIFSDVAQPDQARILALNASYFLKAGGHFVI 246
+AKKRTN+IP+IEDARHP KYR+LVGMVDV+F+DVAQPDQ RI+ALNA FLK GGHFVI
Sbjct: 205 VAKKRTNIIPVIEDARHPHKYRILVGMVDVVFADVAQPDQTRIVALNAHNFLKNGGHFVI 264
Query: 247 SIKANCIDSTVPAEAVFQSEVKKLQQDQFKPFEQVTLEPFERDHACVVGGYRMPKKQK 304
SIKANCIDST EAVF +EVKK+QQ+ KP EQ+TLEP+ERDHA VVG YR P KQK
Sbjct: 265 SIKANCIDSTAAPEAVFAAEVKKMQQENMKPQEQLTLEPYERDHAVVVGIYRPPPKQK 322
|
Involved in pre-rRNA processing. Utilizes the methyl donor S-adenosyl-L-methionine to catalyze the site-specific 2'-hydroxyl methylation of ribose moieties in pre-ribosomal RNA. Site specificity is provided by a guide RNA that base pairs with the substrate. Methylation occurs at a characteristic distance from the sequence involved in base pairing with the guide RNA. Xenopus laevis (taxid: 8355) EC: 2 EC: . EC: 1 EC: . EC: 1 EC: . EC: - |
| >sp|Q8I1F4|FBRL_DROER rRNA 2'-O-methyltransferase fibrillarin OS=Drosophila erecta GN=Fib PE=3 SV=1 | Back alignment and function description |
|---|
Score = 383 bits (984), Expect = e-106, Method: Compositional matrix adjust.
Identities = 183/235 (77%), Positives = 207/235 (88%), Gaps = 1/235 (0%)
Query: 69 VVVEPHRHEGVFIAKGKEDALVTKNLVAGEAVYNEKRISVQNEDGTKVEYRIWNPFRSKL 128
V +EPHRHEGVFIA+GKEDALVT+N V G VY EKRISV+N +G K+EYR+WNPFRSKL
Sbjct: 112 VTIEPHRHEGVFIARGKEDALVTRNFVPGSEVYGEKRISVEN-NGEKIEYRVWNPFRSKL 170
Query: 129 AAAVLGGVDNIWIKPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMA 188
AAAVLGGV+ I + PG++VLYLGAASGTTVSHVSD+VGP G+VYAVEFSHRSGRDL+N+A
Sbjct: 171 AAAVLGGVEQIHMPPGSKVLYLGAASGTTVSHVSDVVGPEGLVYAVEFSHRSGRDLINVA 230
Query: 189 KKRTNVIPIIEDARHPAKYRMLVGMVDVIFSDVAQPDQARILALNASYFLKAGGHFVISI 248
KKRTN+IPIIEDARHP KYRMLVGMVD IF+DVAQPDQ RI+ALNA +FLK GGHFVISI
Sbjct: 231 KKRTNIIPIIEDARHPHKYRMLVGMVDTIFADVAQPDQGRIVALNAQHFLKNGGHFVISI 290
Query: 249 KANCIDSTVPAEAVFQSEVKKLQQDQFKPFEQVTLEPFERDHACVVGGYRMPKKQ 303
KA+CIDST EAVF SEVKK+Q D+ KP EQ+TLEP+ERDHA VVG YR P KQ
Sbjct: 291 KASCIDSTAQPEAVFASEVKKMQADKLKPQEQLTLEPYERDHAVVVGVYRPPPKQ 345
|
Involved in pre-rRNA processing. Utilizes the methyl donor S-adenosyl-L-methionine to catalyze the site-specific 2'-hydroxyl methylation of ribose moieties in pre-ribosomal RNA. Site specificity is provided by a guide RNA that base pairs with the substrate. Methylation occurs at a characteristic distance from the sequence involved in base pairing with the guide RNA. Drosophila erecta (taxid: 7220) EC: 2 EC: . EC: 1 EC: . EC: 1 EC: . EC: - |
| >sp|Q9W1V3|FBRL_DROME rRNA 2'-O-methyltransferase fibrillarin OS=Drosophila melanogaster GN=Fib PE=2 SV=1 | Back alignment and function description |
|---|
Score = 380 bits (975), Expect = e-105, Method: Compositional matrix adjust.
Identities = 181/235 (77%), Positives = 206/235 (87%), Gaps = 1/235 (0%)
Query: 69 VVVEPHRHEGVFIAKGKEDALVTKNLVAGEAVYNEKRISVQNEDGTKVEYRIWNPFRSKL 128
V +EPHRHEGVFIA+GKEDALVT+N V G VY EKRISV+ +G K+EYR+WNPFRSKL
Sbjct: 111 VTIEPHRHEGVFIARGKEDALVTRNFVPGSEVYGEKRISVET-NGEKIEYRVWNPFRSKL 169
Query: 129 AAAVLGGVDNIWIKPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMA 188
AAAVLGGV+ I + PG++VLYLGAASGTTVSHVSD+VGP G+VYAVEFSHRSGRDL+N+A
Sbjct: 170 AAAVLGGVEQIHMPPGSKVLYLGAASGTTVSHVSDVVGPEGLVYAVEFSHRSGRDLINVA 229
Query: 189 KKRTNVIPIIEDARHPAKYRMLVGMVDVIFSDVAQPDQARILALNASYFLKAGGHFVISI 248
KKRTN+IPIIEDARHP KYRMLVGMVD IF+DVAQPDQ RI+ALNA +FLK GGHFVISI
Sbjct: 230 KKRTNIIPIIEDARHPHKYRMLVGMVDTIFADVAQPDQGRIVALNAQHFLKNGGHFVISI 289
Query: 249 KANCIDSTVPAEAVFQSEVKKLQQDQFKPFEQVTLEPFERDHACVVGGYRMPKKQ 303
KA+CIDST EAVF +EVKK+Q D+ KP EQ+TLEP+ERDHA VVG YR P KQ
Sbjct: 290 KASCIDSTAQPEAVFAAEVKKMQADKLKPQEQLTLEPYERDHAVVVGVYRPPPKQ 344
|
Involved in pre-rRNA processing. Utilizes the methyl donor S-adenosyl-L-methionine to catalyze the site-specific 2'-hydroxyl methylation of ribose moieties in pre-ribosomal RNA. Site specificity is provided by a guide RNA that base pairs with the substrate. Methylation occurs at a characteristic distance from the sequence involved in base pairing with the guide RNA. Drosophila melanogaster (taxid: 7227) EC: 2 EC: . EC: 1 EC: . EC: 1 EC: . EC: - |
| >sp|Q80WS3|FBLL1_MOUSE rRNA/tRNA 2'-O-methyltransferase fibrillarin-like protein 1 OS=Mus musculus GN=Fbll1 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 379 bits (973), Expect = e-104, Method: Compositional matrix adjust.
Identities = 181/241 (75%), Positives = 208/241 (86%), Gaps = 1/241 (0%)
Query: 64 KGGSKVVVEPHRHEGVFIAKGKEDALVTKNLVAGEAVYNEKRISVQNEDGTKVEYRIWNP 123
K G V VEPHRHEGVFI +G EDALVT N+V G +VY EKR++V E+G K EYR WNP
Sbjct: 75 KKGITVSVEPHRHEGVFIYRGAEDALVTLNMVPGVSVYGEKRVTVM-ENGEKQEYRTWNP 133
Query: 124 FRSKLAAAVLGGVDNIWIKPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRD 183
FRSKLAAA+LGGVD I IKP ++VLYLGAASGTTVSHVSDI+GP+G+VYAVEFSHR+GRD
Sbjct: 134 FRSKLAAAILGGVDQIHIKPKSKVLYLGAASGTTVSHVSDIIGPDGLVYAVEFSHRAGRD 193
Query: 184 LVNMAKKRTNVIPIIEDARHPAKYRMLVGMVDVIFSDVAQPDQARILALNASYFLKAGGH 243
LVN+AKKRTN+IP++EDARHP KYRML+GMVDVIF+DVAQPDQ+RI+ALNA FL+ GGH
Sbjct: 194 LVNVAKKRTNIIPVLEDARHPLKYRMLIGMVDVIFADVAQPDQSRIVALNAHTFLRNGGH 253
Query: 244 FVISIKANCIDSTVPAEAVFQSEVKKLQQDQFKPFEQVTLEPFERDHACVVGGYRMPKKQ 303
F+ISIKANCIDST AEAVF SEV+KLQQ+ KP EQ+TLEP+ERDHA VVG YR P K
Sbjct: 254 FLISIKANCIDSTASAEAVFASEVRKLQQENLKPQEQLTLEPYERDHAVVVGVYRPPPKS 313
Query: 304 K 304
K
Sbjct: 314 K 314
|
Involved in pre-rRNA processing. Utilizes the methyl donor S-adenosyl-L-methionine to catalyze the site-specific 2'-hydroxyl methylation of ribose moieties in pre-ribosomal RNA. Mus musculus (taxid: 10090) EC: 2 EC: . EC: 1 EC: . EC: 1 EC: . EC: - |
| >sp|A6NHQ2|FBLL1_HUMAN rRNA/tRNA 2'-O-methyltransferase fibrillarin-like protein 1 OS=Homo sapiens GN=FBLL1 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 377 bits (967), Expect = e-104, Method: Compositional matrix adjust.
Identities = 179/239 (74%), Positives = 208/239 (87%), Gaps = 2/239 (0%)
Query: 64 KGGSKVVVEPHRHEGVFIAKGKEDALVTKNLVAGEAVYNEKRISVQNEDGTKVEYRIWNP 123
KG V VEPHRHEGVFI +G EDALVT N+V G++VY E+R++V E G K EYR WNP
Sbjct: 93 KGAMVVSVEPHRHEGVFIYRGAEDALVTLNMVPGQSVYGERRVTV-TEGGVKQEYRTWNP 151
Query: 124 FRSKLAAAVLGGVDNIWIKPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRD 183
FRSKLAAA+LGGVD I IKP ++VLYLGAASGTTVSHVSDI+GP+G+VYAVEFSHR+GRD
Sbjct: 152 FRSKLAAAILGGVDQIHIKPKSKVLYLGAASGTTVSHVSDIIGPDGLVYAVEFSHRAGRD 211
Query: 184 LVNMAKKRTNVIPIIEDARHPAKYRMLVGMVDVIFSDVAQPDQARILALNASYFLKAGGH 243
LVN+AKKRTN+IP++EDARHP KYRML+GMVDVIF+DVAQPDQ+RI+ALNA FL+ GGH
Sbjct: 212 LVNVAKKRTNIIPVLEDARHPLKYRMLIGMVDVIFADVAQPDQSRIVALNAHTFLRNGGH 271
Query: 244 FVISIKANCIDSTVPAEAVFQSEVKKLQQDQFKPFEQVTLEPFERDHACVVGGYR-MPK 301
F+ISIKANCIDST AEAVF SEV+KLQQ+ KP EQ+TLEP+ERDHA VVG YR +PK
Sbjct: 272 FLISIKANCIDSTASAEAVFASEVRKLQQENLKPQEQLTLEPYERDHAVVVGVYRPLPK 330
|
Involved in pre-rRNA processing. Utilizes the methyl donor S-adenosyl-L-methionine to catalyze the site-specific 2'-hydroxyl methylation of ribose moieties in pre-ribosomal RNA. Homo sapiens (taxid: 9606) EC: 2 EC: . EC: 1 EC: . EC: 1 EC: . EC: - |
Close Homologs in the Non-Redundant Database Detected by BLAST 
Original result of BLAST against Nonredundant Database
GI ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Q cover ![]() |
H cover ![]() |
Identity ![]() |
E-value ![]() |
| Query | 305 | ||||||
| 18416588 | 320 | rRNA 2'-O-methyltransferase fibrillarin | 0.796 | 0.759 | 0.938 | 1e-133 | |
| 15028155 | 320 | putative fibrillarin 2 protein AtFib2 [A | 0.796 | 0.759 | 0.938 | 1e-133 | |
| 255545212 | 247 | fibrillarin, putative [Ricinus communis] | 0.796 | 0.983 | 0.942 | 1e-132 | |
| 30696189 | 308 | rRNA 2'-O-methyltransferase fibrillarin | 0.796 | 0.788 | 0.938 | 1e-132 | |
| 302143818 | 245 | unnamed protein product [Vitis vinifera] | 0.793 | 0.987 | 0.938 | 1e-131 | |
| 297792583 | 307 | hypothetical protein ARALYDRAFT_495317 [ | 0.796 | 0.791 | 0.934 | 1e-131 | |
| 224122310 | 245 | predicted protein [Populus trichocarpa] | 0.793 | 0.987 | 0.925 | 1e-131 | |
| 6003681 | 310 | fibrillarin homolog [Arabidopsis thalian | 0.796 | 0.783 | 0.934 | 1e-131 | |
| 224134889 | 245 | predicted protein [Populus trichocarpa] | 0.793 | 0.987 | 0.921 | 1e-131 | |
| 356538021 | 315 | PREDICTED: rRNA 2'-O-methyltransferase f | 0.793 | 0.768 | 0.925 | 1e-131 |
| >gi|18416588|ref|NP_567724.1| rRNA 2'-O-methyltransferase fibrillarin 2 [Arabidopsis thaliana] gi|67461067|sp|Q94AH9.2|MD36A_ARATH RecName: Full=Mediator of RNA polymerase II transcription subunit 36a; AltName: Full=Fibrillarin-like protein 2; AltName: Full=rRNA 2'-O-methyltransferase fibrillarin 2 gi|9965655|gb|AAG10104.1|AF233444_1 fibrillarin 2 [Arabidopsis thaliana] gi|4914455|emb|CAB43694.1| fibrillarin-like protein [Arabidopsis thaliana] gi|7269413|emb|CAB81373.1| fibrillarin-like protein [Arabidopsis thaliana] gi|9965796|gb|AAG10153.1| fibrillarin 2 [Arabidopsis thaliana] gi|21536840|gb|AAM61172.1| fibrillarin 2 (AtFib2) [Arabidopsis thaliana] gi|23297150|gb|AAN13105.1| fibrillarin 2 (AtFib2) [Arabidopsis thaliana] gi|332659685|gb|AEE85085.1| rRNA 2'-O-methyltransferase fibrillarin 2 [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 479 bits (1234), Expect = e-133, Method: Compositional matrix adjust.
Identities = 228/243 (93%), Positives = 236/243 (97%)
Query: 63 MKGGSKVVVEPHRHEGVFIAKGKEDALVTKNLVAGEAVYNEKRISVQNEDGTKVEYRIWN 122
MKGGSKV+VEPHRH GVFIAKGKEDALVTKNLV GEAVYNEKRISVQNEDGTK EYR+WN
Sbjct: 74 MKGGSKVIVEPHRHAGVFIAKGKEDALVTKNLVPGEAVYNEKRISVQNEDGTKTEYRVWN 133
Query: 123 PFRSKLAAAVLGGVDNIWIKPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGR 182
PFRSKLAAA+LGGVDNIWIKPGA+VLYLGAASGTTVSHVSD+VGP G VYAVEFSHRSGR
Sbjct: 134 PFRSKLAAAILGGVDNIWIKPGAKVLYLGAASGTTVSHVSDLVGPEGCVYAVEFSHRSGR 193
Query: 183 DLVNMAKKRTNVIPIIEDARHPAKYRMLVGMVDVIFSDVAQPDQARILALNASYFLKAGG 242
DLVNMAKKRTNVIPIIEDARHPAKYRMLVGMVDVIFSDVAQPDQARILALNASYFLK+GG
Sbjct: 194 DLVNMAKKRTNVIPIIEDARHPAKYRMLVGMVDVIFSDVAQPDQARILALNASYFLKSGG 253
Query: 243 HFVISIKANCIDSTVPAEAVFQSEVKKLQQDQFKPFEQVTLEPFERDHACVVGGYRMPKK 302
HFVISIKANCIDSTVPAEAVFQ+EVKKLQQ+QFKP EQVTLEPFERDHACVVGGYRMPKK
Sbjct: 254 HFVISIKANCIDSTVPAEAVFQTEVKKLQQEQFKPAEQVTLEPFERDHACVVGGYRMPKK 313
Query: 303 QKA 305
KA
Sbjct: 314 PKA 316
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|15028155|gb|AAK76701.1| putative fibrillarin 2 protein AtFib2 [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 479 bits (1232), Expect = e-133, Method: Compositional matrix adjust.
Identities = 228/243 (93%), Positives = 236/243 (97%)
Query: 63 MKGGSKVVVEPHRHEGVFIAKGKEDALVTKNLVAGEAVYNEKRISVQNEDGTKVEYRIWN 122
MKGGSKV+VEPHRH GVFIAKGKEDALVTKNLV GEAVYNEKRISVQNEDGTK EYR+WN
Sbjct: 74 MKGGSKVIVEPHRHAGVFIAKGKEDALVTKNLVPGEAVYNEKRISVQNEDGTKTEYRVWN 133
Query: 123 PFRSKLAAAVLGGVDNIWIKPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGR 182
PFRSKLAAA+LGGVDNIWIKPGA+VLYLGAASGTTVSHVSD+VGP G VYAVEFSHRSGR
Sbjct: 134 PFRSKLAAAILGGVDNIWIKPGAKVLYLGAASGTTVSHVSDLVGPEGSVYAVEFSHRSGR 193
Query: 183 DLVNMAKKRTNVIPIIEDARHPAKYRMLVGMVDVIFSDVAQPDQARILALNASYFLKAGG 242
DLVNMAKKRTNVIPIIEDARHPAKYRMLVGMVDVIFSDVAQPDQARILALNASYFLK+GG
Sbjct: 194 DLVNMAKKRTNVIPIIEDARHPAKYRMLVGMVDVIFSDVAQPDQARILALNASYFLKSGG 253
Query: 243 HFVISIKANCIDSTVPAEAVFQSEVKKLQQDQFKPFEQVTLEPFERDHACVVGGYRMPKK 302
HFVISIKANCIDSTVPAEAVFQ+EVKKLQQ+QFKP EQVTLEPFERDHACVVGGYRMPKK
Sbjct: 254 HFVISIKANCIDSTVPAEAVFQTEVKKLQQEQFKPAEQVTLEPFERDHACVVGGYRMPKK 313
Query: 303 QKA 305
KA
Sbjct: 314 PKA 316
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|255545212|ref|XP_002513667.1| fibrillarin, putative [Ricinus communis] gi|223547575|gb|EEF49070.1| fibrillarin, putative [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 478 bits (1229), Expect = e-132, Method: Compositional matrix adjust.
Identities = 230/244 (94%), Positives = 238/244 (97%), Gaps = 1/244 (0%)
Query: 63 MKGGSKVVVEPHRHEGVFIAKG-KEDALVTKNLVAGEAVYNEKRISVQNEDGTKVEYRIW 121
M+GGSKVVVEPHRHEGVFI KG KEDALVTKNLV GEAVYNEKRISVQNEDGTKVEYR+W
Sbjct: 1 MRGGSKVVVEPHRHEGVFIGKGGKEDALVTKNLVPGEAVYNEKRISVQNEDGTKVEYRVW 60
Query: 122 NPFRSKLAAAVLGGVDNIWIKPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSG 181
NPFRSKLAAA+LGGVDNIWIKPGA+VLYLGAASGTTVSHVSDIVGP GVVYAVEFSHRSG
Sbjct: 61 NPFRSKLAAAILGGVDNIWIKPGAKVLYLGAASGTTVSHVSDIVGPTGVVYAVEFSHRSG 120
Query: 182 RDLVNMAKKRTNVIPIIEDARHPAKYRMLVGMVDVIFSDVAQPDQARILALNASYFLKAG 241
RDLVNMAKKRTNVIPIIEDARHPAKYRMLVGMVDVIFSDVAQPDQARILALNASYFLKAG
Sbjct: 121 RDLVNMAKKRTNVIPIIEDARHPAKYRMLVGMVDVIFSDVAQPDQARILALNASYFLKAG 180
Query: 242 GHFVISIKANCIDSTVPAEAVFQSEVKKLQQDQFKPFEQVTLEPFERDHACVVGGYRMPK 301
GHFVISIKANCIDSTVPAEAVF+SEVKK+ Q+QFKP EQVTLEPFERDHACV+GGYRMPK
Sbjct: 181 GHFVISIKANCIDSTVPAEAVFESEVKKMTQEQFKPTEQVTLEPFERDHACVIGGYRMPK 240
Query: 302 KQKA 305
KQKA
Sbjct: 241 KQKA 244
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|30696189|ref|NP_568772.3| rRNA 2'-O-methyltransferase fibrillarin 1 [Arabidopsis thaliana] gi|67461076|sp|Q9FEF8.1|MD36B_ARATH RecName: Full=Probable mediator of RNA polymerase II transcription subunit 36b; AltName: Full=SKP1-interacting partner 7; AltName: Full=rRNA 2'-O-methyltransferase fibrillarin 1 gi|9965653|gb|AAG10103.1|AF233443_1 fibrillarin 1 [Arabidopsis thaliana] gi|9965751|gb|AAG10152.1| fibrillarin 1 [Arabidopsis thaliana] gi|10177413|dbj|BAB10544.1| fibrillarin-like [Arabidopsis thaliana] gi|22654993|gb|AAM98088.1| AT5g52470/K24M7_22 [Arabidopsis thaliana] gi|28416513|gb|AAO42787.1| AT5g52470/K24M7_22 [Arabidopsis thaliana] gi|110740295|dbj|BAF02044.1| fibrillarin homolog [Arabidopsis thaliana] gi|332008834|gb|AED96217.1| rRNA 2'-O-methyltransferase fibrillarin 1 [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 477 bits (1228), Expect = e-132, Method: Compositional matrix adjust.
Identities = 228/243 (93%), Positives = 235/243 (96%)
Query: 63 MKGGSKVVVEPHRHEGVFIAKGKEDALVTKNLVAGEAVYNEKRISVQNEDGTKVEYRIWN 122
MKGGSKV+VEPHRH GVFIAKGKEDALVTKNLV GEAVYNEKRISVQNEDGTKVEYR+WN
Sbjct: 63 MKGGSKVIVEPHRHAGVFIAKGKEDALVTKNLVPGEAVYNEKRISVQNEDGTKVEYRVWN 122
Query: 123 PFRSKLAAAVLGGVDNIWIKPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGR 182
PFRSKLAAA+LGGVDNIWIKPGA+VLYLGAASGTTVSHVSD+VGP G VYAVEFSHRSGR
Sbjct: 123 PFRSKLAAAILGGVDNIWIKPGAKVLYLGAASGTTVSHVSDLVGPEGCVYAVEFSHRSGR 182
Query: 183 DLVNMAKKRTNVIPIIEDARHPAKYRMLVGMVDVIFSDVAQPDQARILALNASYFLKAGG 242
DLVNMAKKRTNVIPIIEDARHPAKYRMLVGMVDVIFSDVAQPDQARILALNAS+FLK GG
Sbjct: 183 DLVNMAKKRTNVIPIIEDARHPAKYRMLVGMVDVIFSDVAQPDQARILALNASFFLKTGG 242
Query: 243 HFVISIKANCIDSTVPAEAVFQSEVKKLQQDQFKPFEQVTLEPFERDHACVVGGYRMPKK 302
HFVISIKANCIDSTV AEAVFQSEVKKLQQ+QFKP EQVTLEPFERDHACVVGGYRMPKK
Sbjct: 243 HFVISIKANCIDSTVAAEAVFQSEVKKLQQEQFKPAEQVTLEPFERDHACVVGGYRMPKK 302
Query: 303 QKA 305
QK
Sbjct: 303 QKT 305
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|302143818|emb|CBI22679.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 475 bits (1223), Expect = e-131, Method: Compositional matrix adjust.
Identities = 227/242 (93%), Positives = 234/242 (96%)
Query: 63 MKGGSKVVVEPHRHEGVFIAKGKEDALVTKNLVAGEAVYNEKRISVQNEDGTKVEYRIWN 122
MKGGS+VVVEPHRHEGVFIAKGKEDALVTKN+V GEAVYNEKRISVQNEDG+K+EYR+WN
Sbjct: 1 MKGGSRVVVEPHRHEGVFIAKGKEDALVTKNMVPGEAVYNEKRISVQNEDGSKIEYRVWN 60
Query: 123 PFRSKLAAAVLGGVDNIWIKPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGR 182
PFRSKLAAA+LGGVD IWIKPGARVLYLGAASGTTVSHVSD+VGP GVVYAVEFSHRSGR
Sbjct: 61 PFRSKLAAAILGGVDEIWIKPGARVLYLGAASGTTVSHVSDVVGPTGVVYAVEFSHRSGR 120
Query: 183 DLVNMAKKRTNVIPIIEDARHPAKYRMLVGMVDVIFSDVAQPDQARILALNASYFLKAGG 242
DLVNMAKKRTNVIPIIEDARHPAKYRMLVGMVDVIFSDVAQPDQARILALNASYFLKAGG
Sbjct: 121 DLVNMAKKRTNVIPIIEDARHPAKYRMLVGMVDVIFSDVAQPDQARILALNASYFLKAGG 180
Query: 243 HFVISIKANCIDSTVPAEAVFQSEVKKLQQDQFKPFEQVTLEPFERDHACVVGGYRMPKK 302
HFVISIKANCIDSTVPAEAVF EVKKLQ D FKP EQVTLEPFERDHACVVGGYRMPKK
Sbjct: 181 HFVISIKANCIDSTVPAEAVFAQEVKKLQADMFKPSEQVTLEPFERDHACVVGGYRMPKK 240
Query: 303 QK 304
QK
Sbjct: 241 QK 242
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|297792583|ref|XP_002864176.1| hypothetical protein ARALYDRAFT_495317 [Arabidopsis lyrata subsp. lyrata] gi|297310011|gb|EFH40435.1| hypothetical protein ARALYDRAFT_495317 [Arabidopsis lyrata subsp. lyrata] | Back alignment and taxonomy information |
|---|
Score = 474 bits (1221), Expect = e-131, Method: Compositional matrix adjust.
Identities = 227/243 (93%), Positives = 235/243 (96%)
Query: 63 MKGGSKVVVEPHRHEGVFIAKGKEDALVTKNLVAGEAVYNEKRISVQNEDGTKVEYRIWN 122
MKGGSKV+VEPHRH GVFIAKGKEDALVTKNLV GEAVYNEKRISVQNEDGTK+EYR+WN
Sbjct: 62 MKGGSKVLVEPHRHAGVFIAKGKEDALVTKNLVPGEAVYNEKRISVQNEDGTKIEYRVWN 121
Query: 123 PFRSKLAAAVLGGVDNIWIKPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGR 182
PFRSKLAAA+LGGVDNIWIKPGA+VLYLGAASGTTVSHVSD+VGP G VYAVEFSHRSGR
Sbjct: 122 PFRSKLAAAILGGVDNIWIKPGAKVLYLGAASGTTVSHVSDLVGPEGCVYAVEFSHRSGR 181
Query: 183 DLVNMAKKRTNVIPIIEDARHPAKYRMLVGMVDVIFSDVAQPDQARILALNASYFLKAGG 242
DLVNMAKKRTNVIPIIEDARHPAKYRMLVGMVDVIFSDVAQPDQARIL LNAS+FLK GG
Sbjct: 182 DLVNMAKKRTNVIPIIEDARHPAKYRMLVGMVDVIFSDVAQPDQARILGLNASFFLKTGG 241
Query: 243 HFVISIKANCIDSTVPAEAVFQSEVKKLQQDQFKPFEQVTLEPFERDHACVVGGYRMPKK 302
HFVISIKANCIDSTV AEAVFQSEVKKLQQ+QFKP EQVTLEPFERDHACVVGGYRMPKK
Sbjct: 242 HFVISIKANCIDSTVAAEAVFQSEVKKLQQEQFKPAEQVTLEPFERDHACVVGGYRMPKK 301
Query: 303 QKA 305
QKA
Sbjct: 302 QKA 304
|
Source: Arabidopsis lyrata subsp. lyrata Species: Arabidopsis lyrata Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224122310|ref|XP_002318803.1| predicted protein [Populus trichocarpa] gi|222859476|gb|EEE97023.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 474 bits (1221), Expect = e-131, Method: Compositional matrix adjust.
Identities = 224/242 (92%), Positives = 236/242 (97%)
Query: 63 MKGGSKVVVEPHRHEGVFIAKGKEDALVTKNLVAGEAVYNEKRISVQNEDGTKVEYRIWN 122
MKGGSKVVVEPHRHEGVFIAKGKEDALVTKN+V GE VYNEK+ISVQNEDGTKVEYR+WN
Sbjct: 1 MKGGSKVVVEPHRHEGVFIAKGKEDALVTKNMVPGETVYNEKKISVQNEDGTKVEYRVWN 60
Query: 123 PFRSKLAAAVLGGVDNIWIKPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGR 182
PFRSKLA+A+LGGVD++WIKPGA+VLYLGAASGTTVSHVSDIVGP GVVYAVEFSHRSGR
Sbjct: 61 PFRSKLASAILGGVDDVWIKPGAKVLYLGAASGTTVSHVSDIVGPTGVVYAVEFSHRSGR 120
Query: 183 DLVNMAKKRTNVIPIIEDARHPAKYRMLVGMVDVIFSDVAQPDQARILALNASYFLKAGG 242
DLVNMAKKRTNVIPIIEDARHPAKYRMLVGMVDVIFSDVAQPDQARILALNASYFLK+GG
Sbjct: 121 DLVNMAKKRTNVIPIIEDARHPAKYRMLVGMVDVIFSDVAQPDQARILALNASYFLKSGG 180
Query: 243 HFVISIKANCIDSTVPAEAVFQSEVKKLQQDQFKPFEQVTLEPFERDHACVVGGYRMPKK 302
HFVISIKANCIDSTVPAEAVF+SEVKK+ Q+Q KP EQVTLEPFERDHACVVGGYRMPKK
Sbjct: 181 HFVISIKANCIDSTVPAEAVFESEVKKMVQEQLKPTEQVTLEPFERDHACVVGGYRMPKK 240
Query: 303 QK 304
QK
Sbjct: 241 QK 242
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|6003681|gb|AAF00542.1| fibrillarin homolog [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 473 bits (1218), Expect = e-131, Method: Compositional matrix adjust.
Identities = 229/245 (93%), Positives = 236/245 (96%), Gaps = 2/245 (0%)
Query: 63 MKGGSKVVVEPHRHEGVFIAKGKEDALVTKNLVAGEAVYNEKRISVQNEDGTKVEYRIWN 122
MKGGSKV+VEPHRH GVFIAKGKEDALVTKNLV GEAVYNEKRISVQNEDGTKVEYR+WN
Sbjct: 63 MKGGSKVIVEPHRHAGVFIAKGKEDALVTKNLVPGEAVYNEKRISVQNEDGTKVEYRVWN 122
Query: 123 PFRSKLAAAVLGGVD--NIWIKPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRS 180
PFRSKLAAA+LGGVD NIWIKPGA+VLYLGAASGTTVSHVSD+VGP G VYAVEFSHRS
Sbjct: 123 PFRSKLAAAILGGVDLDNIWIKPGAKVLYLGAASGTTVSHVSDLVGPEGCVYAVEFSHRS 182
Query: 181 GRDLVNMAKKRTNVIPIIEDARHPAKYRMLVGMVDVIFSDVAQPDQARILALNASYFLKA 240
GRDLVNMAKKRTNVIPIIEDARHPAKYRMLVGMVDVIFSDVAQPDQARILALNAS+FLK
Sbjct: 183 GRDLVNMAKKRTNVIPIIEDARHPAKYRMLVGMVDVIFSDVAQPDQARILALNASFFLKT 242
Query: 241 GGHFVISIKANCIDSTVPAEAVFQSEVKKLQQDQFKPFEQVTLEPFERDHACVVGGYRMP 300
GGHFVISIKANCIDSTV AEAVFQSEVKKLQQ+QFKP EQVTLEPFERDHACVVGGYRMP
Sbjct: 243 GGHFVISIKANCIDSTVAAEAVFQSEVKKLQQEQFKPAEQVTLEPFERDHACVVGGYRMP 302
Query: 301 KKQKA 305
KKQKA
Sbjct: 303 KKQKA 307
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224134889|ref|XP_002321930.1| predicted protein [Populus trichocarpa] gi|222868926|gb|EEF06057.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 473 bits (1217), Expect = e-131, Method: Compositional matrix adjust.
Identities = 223/242 (92%), Positives = 235/242 (97%)
Query: 63 MKGGSKVVVEPHRHEGVFIAKGKEDALVTKNLVAGEAVYNEKRISVQNEDGTKVEYRIWN 122
M+GGSKVVVEPHRHEGVFIAKGKEDALVTKN+V GE VYNEK++SVQNEDGTKVEYR+WN
Sbjct: 1 MRGGSKVVVEPHRHEGVFIAKGKEDALVTKNMVPGETVYNEKKVSVQNEDGTKVEYRVWN 60
Query: 123 PFRSKLAAAVLGGVDNIWIKPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGR 182
PFRSKLAAA+LGGVD++WIKPGA+VLYLGAASGTTVSHVSDIVGP GVVYAVEFSHRSGR
Sbjct: 61 PFRSKLAAAILGGVDDVWIKPGAKVLYLGAASGTTVSHVSDIVGPTGVVYAVEFSHRSGR 120
Query: 183 DLVNMAKKRTNVIPIIEDARHPAKYRMLVGMVDVIFSDVAQPDQARILALNASYFLKAGG 242
DLVNMAKKRTNVIPIIEDARHPAKYRMLVGMVDVIFSDVAQPDQARILALNASYFLK GG
Sbjct: 121 DLVNMAKKRTNVIPIIEDARHPAKYRMLVGMVDVIFSDVAQPDQARILALNASYFLKTGG 180
Query: 243 HFVISIKANCIDSTVPAEAVFQSEVKKLQQDQFKPFEQVTLEPFERDHACVVGGYRMPKK 302
HFVISIKANCIDSTVPAEAVF+SEVKK+ Q+Q KP EQVTLEPFERDHACVVGGYRMPKK
Sbjct: 181 HFVISIKANCIDSTVPAEAVFESEVKKMVQEQLKPSEQVTLEPFERDHACVVGGYRMPKK 240
Query: 303 QK 304
QK
Sbjct: 241 QK 242
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356538021|ref|XP_003537503.1| PREDICTED: rRNA 2'-O-methyltransferase fibrillarin 2-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 473 bits (1217), Expect = e-131, Method: Compositional matrix adjust.
Identities = 224/242 (92%), Positives = 235/242 (97%)
Query: 63 MKGGSKVVVEPHRHEGVFIAKGKEDALVTKNLVAGEAVYNEKRISVQNEDGTKVEYRIWN 122
MKGGSKVVV+PHRH+G+FIAKGKEDALVTKNLV GEAVYNEKRI+VQNEDGTK EYR+WN
Sbjct: 70 MKGGSKVVVQPHRHDGIFIAKGKEDALVTKNLVPGEAVYNEKRITVQNEDGTKEEYRVWN 129
Query: 123 PFRSKLAAAVLGGVDNIWIKPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGR 182
PFRSKLAAA+LGGVDNIWIKPGARVLYLGAASGTTVSHVSD+VGP GVVYAVEFSHRSGR
Sbjct: 130 PFRSKLAAAILGGVDNIWIKPGARVLYLGAASGTTVSHVSDVVGPTGVVYAVEFSHRSGR 189
Query: 183 DLVNMAKKRTNVIPIIEDARHPAKYRMLVGMVDVIFSDVAQPDQARILALNASYFLKAGG 242
DLVNMAKKRTNVIPIIEDARHPAKYRMLVGMVDVIFSDVAQPDQARIL LNASY+LK GG
Sbjct: 190 DLVNMAKKRTNVIPIIEDARHPAKYRMLVGMVDVIFSDVAQPDQARILGLNASYYLKTGG 249
Query: 243 HFVISIKANCIDSTVPAEAVFQSEVKKLQQDQFKPFEQVTLEPFERDHACVVGGYRMPKK 302
HFVISIKANCIDSTVPAEAVF+SEV KL+ DQFKPFEQVTLEPFERDHACVVGGYRMPKK
Sbjct: 250 HFVISIKANCIDSTVPAEAVFESEVNKLKADQFKPFEQVTLEPFERDHACVVGGYRMPKK 309
Query: 303 QK 304
+K
Sbjct: 310 KK 311
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST 
Original result of BLAST against Gene Ontology (AMIGO)
ID ![]() |
Alignment graph ![]() |
Length ![]() |
Definition ![]() |
Q cover ![]() |
H cover ![]() |
Identity ![]() |
E-value ![]() |
| Query | 305 | ||||||
| TAIR|locus:2131386 | 320 | FIB2 "fibrillarin 2" [Arabidop | 0.783 | 0.746 | 0.937 | 1.3e-118 | |
| TAIR|locus:2156747 | 308 | FIB1 "fibrillarin 1" [Arabidop | 0.780 | 0.772 | 0.941 | 3.3e-118 | |
| RGD|1305542 | 327 | Fbl "fibrillarin" [Rattus norv | 0.770 | 0.718 | 0.788 | 9.4e-98 | |
| UNIPROTKB|F1MM59 | 322 | FBL "Uncharacterized protein" | 0.770 | 0.729 | 0.788 | 1.2e-97 | |
| UNIPROTKB|F1PQN3 | 313 | FBL "Uncharacterized protein" | 0.770 | 0.750 | 0.788 | 1.2e-97 | |
| UNIPROTKB|P22087 | 321 | FBL "rRNA 2'-O-methyltransfera | 0.770 | 0.732 | 0.788 | 1.2e-97 | |
| UNIPROTKB|I3L5T3 | 352 | FBL "Uncharacterized protein" | 0.770 | 0.667 | 0.788 | 1.2e-97 | |
| MGI|MGI:95486 | 327 | Fbl "fibrillarin" [Mus musculu | 0.770 | 0.718 | 0.788 | 1.2e-97 | |
| ZFIN|ZDB-GENE-040426-1936 | 317 | fbl "fibrillarin" [Danio rerio | 0.777 | 0.747 | 0.781 | 1.1e-96 | |
| UNIPROTKB|Q8I1F4 | 345 | Fib "rRNA 2'-O-methyltransfera | 0.767 | 0.678 | 0.778 | 1.4e-96 |
| TAIR|locus:2131386 FIB2 "fibrillarin 2" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1168 (416.2 bits), Expect = 1.3e-118, P = 1.3e-118
Identities = 224/239 (93%), Positives = 232/239 (97%)
Query: 67 SKVVVEPHRHEGVFIAKGKEDALVTKNLVAGEAVYNEKRISVQNEDGTKVEYRIWNPFRS 126
SKV+VEPHRH GVFIAKGKEDALVTKNLV GEAVYNEKRISVQNEDGTK EYR+WNPFRS
Sbjct: 78 SKVIVEPHRHAGVFIAKGKEDALVTKNLVPGEAVYNEKRISVQNEDGTKTEYRVWNPFRS 137
Query: 127 KLAAAVLGGVDNIWIKPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVN 186
KLAAA+LGGVDNIWIKPGA+VLYLGAASGTTVSHVSD+VGP G VYAVEFSHRSGRDLVN
Sbjct: 138 KLAAAILGGVDNIWIKPGAKVLYLGAASGTTVSHVSDLVGPEGCVYAVEFSHRSGRDLVN 197
Query: 187 MAKKRTNVIPIIEDARHPAKYRMLVGMVDVIFSDVAQPDQARILALNASYFLKAGGHFVI 246
MAKKRTNVIPIIEDARHPAKYRMLVGMVDVIFSDVAQPDQARILALNASYFLK+GGHFVI
Sbjct: 198 MAKKRTNVIPIIEDARHPAKYRMLVGMVDVIFSDVAQPDQARILALNASYFLKSGGHFVI 257
Query: 247 SIKANCIDSTVPAEAVFQSEVKKLQQDQFKPFEQVTLEPFERDHACVVGGYRMPKKQKA 305
SIKANCIDSTVPAEAVFQ+EVKKLQQ+QFKP EQVTLEPFERDHACVVGGYRMPKK KA
Sbjct: 258 SIKANCIDSTVPAEAVFQTEVKKLQQEQFKPAEQVTLEPFERDHACVVGGYRMPKKPKA 316
|
|
| TAIR|locus:2156747 FIB1 "fibrillarin 1" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1164 (414.8 bits), Expect = 3.3e-118, P = 3.3e-118
Identities = 224/238 (94%), Positives = 231/238 (97%)
Query: 67 SKVVVEPHRHEGVFIAKGKEDALVTKNLVAGEAVYNEKRISVQNEDGTKVEYRIWNPFRS 126
SKV+VEPHRH GVFIAKGKEDALVTKNLV GEAVYNEKRISVQNEDGTKVEYR+WNPFRS
Sbjct: 67 SKVIVEPHRHAGVFIAKGKEDALVTKNLVPGEAVYNEKRISVQNEDGTKVEYRVWNPFRS 126
Query: 127 KLAAAVLGGVDNIWIKPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVN 186
KLAAA+LGGVDNIWIKPGA+VLYLGAASGTTVSHVSD+VGP G VYAVEFSHRSGRDLVN
Sbjct: 127 KLAAAILGGVDNIWIKPGAKVLYLGAASGTTVSHVSDLVGPEGCVYAVEFSHRSGRDLVN 186
Query: 187 MAKKRTNVIPIIEDARHPAKYRMLVGMVDVIFSDVAQPDQARILALNASYFLKAGGHFVI 246
MAKKRTNVIPIIEDARHPAKYRMLVGMVDVIFSDVAQPDQARILALNAS+FLK GGHFVI
Sbjct: 187 MAKKRTNVIPIIEDARHPAKYRMLVGMVDVIFSDVAQPDQARILALNASFFLKTGGHFVI 246
Query: 247 SIKANCIDSTVPAEAVFQSEVKKLQQDQFKPFEQVTLEPFERDHACVVGGYRMPKKQK 304
SIKANCIDSTV AEAVFQSEVKKLQQ+QFKP EQVTLEPFERDHACVVGGYRMPKKQK
Sbjct: 247 SIKANCIDSTVAAEAVFQSEVKKLQQEQFKPAEQVTLEPFERDHACVVGGYRMPKKQK 304
|
|
| RGD|1305542 Fbl "fibrillarin" [Rattus norvegicus (taxid:10116)] | Back alignment and assigned GO terms |
|---|
Score = 971 (346.9 bits), Expect = 9.4e-98, P = 9.4e-98
Identities = 186/236 (78%), Positives = 208/236 (88%)
Query: 69 VVVEPHRHEGVFIAKGKEDALVTKNLVAGEAVYNEKRISVQNEDGTKVEYRIWNPFRSKL 128
V+VEPHRHEGVFI +GKEDALVTKNLV GE+VY EKR+S+ D K+EYR WNPFRSKL
Sbjct: 92 VMVEPHRHEGVFICRGKEDALVTKNLVPGESVYGEKRVSISEGDD-KIEYRAWNPFRSKL 150
Query: 129 AAAVLGGVDNIWIKPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMA 188
AAA+LGGVD I IKPGA+VLYLGAASGTTVSHVSDIVGP+G+VYAVEFSHRSGRDL+N+A
Sbjct: 151 AAAILGGVDQIHIKPGAKVLYLGAASGTTVSHVSDIVGPDGLVYAVEFSHRSGRDLINLA 210
Query: 189 KKRTNVIPIIEDARHPAKYRMLVGMVDVIFSDVAQPDQARILALNASYFLKAGGHFVISI 248
KKRTN+IP+IEDARHP KYRML+ MVDVIF+DVAQPDQ RI+ALNA FL+ GGHFVISI
Sbjct: 211 KKRTNIIPVIEDARHPHKYRMLIAMVDVIFADVAQPDQTRIVALNAHTFLRNGGHFVISI 270
Query: 249 KANCIDSTVPAEAVFQSEVKKLQQDQFKPFEQVTLEPFERDHACVVGGYRMPKKQK 304
KANCIDST AEAVF SEVKK+QQ+ KP EQ+TLEP+ERDHA VVG YR P K K
Sbjct: 271 KANCIDSTASAEAVFASEVKKMQQENMKPQEQLTLEPYERDHAVVVGVYRPPPKAK 326
|
|
| UNIPROTKB|F1MM59 FBL "Uncharacterized protein" [Bos taurus (taxid:9913)] | Back alignment and assigned GO terms |
|---|
Score = 970 (346.5 bits), Expect = 1.2e-97, P = 1.2e-97
Identities = 186/236 (78%), Positives = 208/236 (88%)
Query: 69 VVVEPHRHEGVFIAKGKEDALVTKNLVAGEAVYNEKRISVQNEDGTKVEYRIWNPFRSKL 128
V+VEPHRHEGVFI +GKEDALVTKNLV GE+VY EKR+S+ D K+EYR WNPFRSKL
Sbjct: 87 VMVEPHRHEGVFICRGKEDALVTKNLVPGESVYGEKRVSISEGDD-KIEYRAWNPFRSKL 145
Query: 129 AAAVLGGVDNIWIKPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMA 188
AAA+LGGVD I IKPGA+VLYLGAASGTTVSHVSDIVGP+G+VYAVEFSHRSGRDL+N+A
Sbjct: 146 AAAILGGVDQIHIKPGAKVLYLGAASGTTVSHVSDIVGPDGLVYAVEFSHRSGRDLINLA 205
Query: 189 KKRTNVIPIIEDARHPAKYRMLVGMVDVIFSDVAQPDQARILALNASYFLKAGGHFVISI 248
KKRTN+IP+IEDARHP KYRML+ MVDVIF+DVAQPDQ RI+ALNA FL+ GGHFVISI
Sbjct: 206 KKRTNIIPVIEDARHPHKYRMLIAMVDVIFADVAQPDQTRIVALNAHTFLRNGGHFVISI 265
Query: 249 KANCIDSTVPAEAVFQSEVKKLQQDQFKPFEQVTLEPFERDHACVVGGYRMPKKQK 304
KANCIDST AEAVF SEVKK+QQ+ KP EQ+TLEP+ERDHA VVG YR P K K
Sbjct: 266 KANCIDSTASAEAVFASEVKKMQQENMKPQEQLTLEPYERDHAVVVGVYRPPPKVK 321
|
|
| UNIPROTKB|F1PQN3 FBL "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] | Back alignment and assigned GO terms |
|---|
Score = 970 (346.5 bits), Expect = 1.2e-97, P = 1.2e-97
Identities = 186/236 (78%), Positives = 208/236 (88%)
Query: 69 VVVEPHRHEGVFIAKGKEDALVTKNLVAGEAVYNEKRISVQNEDGTKVEYRIWNPFRSKL 128
V+VEPHRHEGVFI +GKEDALVTKNLV GE+VY EKR+S+ D K+EYR WNPFRSKL
Sbjct: 78 VMVEPHRHEGVFICRGKEDALVTKNLVPGESVYGEKRVSISEGDD-KIEYRAWNPFRSKL 136
Query: 129 AAAVLGGVDNIWIKPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMA 188
AAA+LGGVD I IKPGA+VLYLGAASGTTVSHVSDIVGP+G+VYAVEFSHRSGRDL+N+A
Sbjct: 137 AAAILGGVDQIHIKPGAKVLYLGAASGTTVSHVSDIVGPDGLVYAVEFSHRSGRDLINLA 196
Query: 189 KKRTNVIPIIEDARHPAKYRMLVGMVDVIFSDVAQPDQARILALNASYFLKAGGHFVISI 248
KKRTN+IP+IEDARHP KYRML+ MVDVIF+DVAQPDQ RI+ALNA FL+ GGHFVISI
Sbjct: 197 KKRTNIIPVIEDARHPHKYRMLIAMVDVIFADVAQPDQTRIVALNAHTFLRNGGHFVISI 256
Query: 249 KANCIDSTVPAEAVFQSEVKKLQQDQFKPFEQVTLEPFERDHACVVGGYRMPKKQK 304
KANCIDST AEAVF SEVKK+QQ+ KP EQ+TLEP+ERDHA VVG YR P K K
Sbjct: 257 KANCIDSTASAEAVFASEVKKMQQENMKPQEQLTLEPYERDHAVVVGVYRPPPKVK 312
|
|
| UNIPROTKB|P22087 FBL "rRNA 2'-O-methyltransferase fibrillarin" [Homo sapiens (taxid:9606)] | Back alignment and assigned GO terms |
|---|
Score = 970 (346.5 bits), Expect = 1.2e-97, P = 1.2e-97
Identities = 186/236 (78%), Positives = 208/236 (88%)
Query: 69 VVVEPHRHEGVFIAKGKEDALVTKNLVAGEAVYNEKRISVQNEDGTKVEYRIWNPFRSKL 128
V+VEPHRHEGVFI +GKEDALVTKNLV GE+VY EKR+S+ D K+EYR WNPFRSKL
Sbjct: 86 VMVEPHRHEGVFICRGKEDALVTKNLVPGESVYGEKRVSISEGDD-KIEYRAWNPFRSKL 144
Query: 129 AAAVLGGVDNIWIKPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMA 188
AAA+LGGVD I IKPGA+VLYLGAASGTTVSHVSDIVGP+G+VYAVEFSHRSGRDL+N+A
Sbjct: 145 AAAILGGVDQIHIKPGAKVLYLGAASGTTVSHVSDIVGPDGLVYAVEFSHRSGRDLINLA 204
Query: 189 KKRTNVIPIIEDARHPAKYRMLVGMVDVIFSDVAQPDQARILALNASYFLKAGGHFVISI 248
KKRTN+IP+IEDARHP KYRML+ MVDVIF+DVAQPDQ RI+ALNA FL+ GGHFVISI
Sbjct: 205 KKRTNIIPVIEDARHPHKYRMLIAMVDVIFADVAQPDQTRIVALNAHTFLRNGGHFVISI 264
Query: 249 KANCIDSTVPAEAVFQSEVKKLQQDQFKPFEQVTLEPFERDHACVVGGYRMPKKQK 304
KANCIDST AEAVF SEVKK+QQ+ KP EQ+TLEP+ERDHA VVG YR P K K
Sbjct: 265 KANCIDSTASAEAVFASEVKKMQQENMKPQEQLTLEPYERDHAVVVGVYRPPPKVK 320
|
|
| UNIPROTKB|I3L5T3 FBL "Uncharacterized protein" [Sus scrofa (taxid:9823)] | Back alignment and assigned GO terms |
|---|
Score = 970 (346.5 bits), Expect = 1.2e-97, P = 1.2e-97
Identities = 186/236 (78%), Positives = 208/236 (88%)
Query: 69 VVVEPHRHEGVFIAKGKEDALVTKNLVAGEAVYNEKRISVQNEDGTKVEYRIWNPFRSKL 128
V+VEPHRHEGVFI +GKEDALVTKNLV GE+VY EKR+S+ D K+EYR WNPFRSKL
Sbjct: 117 VMVEPHRHEGVFICRGKEDALVTKNLVPGESVYGEKRVSISEGDD-KIEYRAWNPFRSKL 175
Query: 129 AAAVLGGVDNIWIKPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMA 188
AAA+LGGVD I IKPGA+VLYLGAASGTTVSHVSDIVGP+G+VYAVEFSHRSGRDL+N+A
Sbjct: 176 AAAILGGVDQIHIKPGAKVLYLGAASGTTVSHVSDIVGPDGLVYAVEFSHRSGRDLINLA 235
Query: 189 KKRTNVIPIIEDARHPAKYRMLVGMVDVIFSDVAQPDQARILALNASYFLKAGGHFVISI 248
KKRTN+IP+IEDARHP KYRML+ MVDVIF+DVAQPDQ RI+ALNA FL+ GGHFVISI
Sbjct: 236 KKRTNIIPVIEDARHPHKYRMLIAMVDVIFADVAQPDQTRIVALNAHTFLRNGGHFVISI 295
Query: 249 KANCIDSTVPAEAVFQSEVKKLQQDQFKPFEQVTLEPFERDHACVVGGYRMPKKQK 304
KANCIDST AEAVF SEVKK+QQ+ KP EQ+TLEP+ERDHA VVG YR P K K
Sbjct: 296 KANCIDSTASAEAVFASEVKKMQQENMKPQEQLTLEPYERDHAVVVGVYRPPPKVK 351
|
|
| MGI|MGI:95486 Fbl "fibrillarin" [Mus musculus (taxid:10090)] | Back alignment and assigned GO terms |
|---|
Score = 970 (346.5 bits), Expect = 1.2e-97, P = 1.2e-97
Identities = 186/236 (78%), Positives = 208/236 (88%)
Query: 69 VVVEPHRHEGVFIAKGKEDALVTKNLVAGEAVYNEKRISVQNEDGTKVEYRIWNPFRSKL 128
V+VEPHRHEGVFI +GKEDALVTKNLV GE+VY EKR+S+ D K+EYR WNPFRSKL
Sbjct: 92 VMVEPHRHEGVFICRGKEDALVTKNLVPGESVYGEKRVSISEGDD-KIEYRAWNPFRSKL 150
Query: 129 AAAVLGGVDNIWIKPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMA 188
AAA+LGGVD I IKPGA+VLYLGAASGTTVSHVSDIVGP+G+VYAVEFSHRSGRDL+N+A
Sbjct: 151 AAAILGGVDQIHIKPGAKVLYLGAASGTTVSHVSDIVGPDGLVYAVEFSHRSGRDLINLA 210
Query: 189 KKRTNVIPIIEDARHPAKYRMLVGMVDVIFSDVAQPDQARILALNASYFLKAGGHFVISI 248
KKRTN+IP+IEDARHP KYRML+ MVDVIF+DVAQPDQ RI+ALNA FL+ GGHFVISI
Sbjct: 211 KKRTNIIPVIEDARHPHKYRMLIAMVDVIFADVAQPDQTRIVALNAHTFLRNGGHFVISI 270
Query: 249 KANCIDSTVPAEAVFQSEVKKLQQDQFKPFEQVTLEPFERDHACVVGGYRMPKKQK 304
KANCIDST AEAVF SEVKK+QQ+ KP EQ+TLEP+ERDHA VVG YR P K K
Sbjct: 271 KANCIDSTASAEAVFASEVKKMQQENMKPQEQLTLEPYERDHAVVVGVYRPPPKVK 326
|
|
| ZFIN|ZDB-GENE-040426-1936 fbl "fibrillarin" [Danio rerio (taxid:7955)] | Back alignment and assigned GO terms |
|---|
Score = 961 (343.3 bits), Expect = 1.1e-96, P = 1.1e-96
Identities = 186/238 (78%), Positives = 207/238 (86%)
Query: 67 SKVVVEPHRHEGVFIAKGKEDALVTKNLVAGEAVYNEKRISVQNEDGTKVEYRIWNPFRS 126
+KV VEPHRHEGVFI +GKEDALVTKN+V GE+VY EKRI+V+ E TK+EYR WNPFRS
Sbjct: 80 AKVTVEPHRHEGVFICRGKEDALVTKNMVIGESVYGEKRINVE-EGETKIEYRAWNPFRS 138
Query: 127 KLAAAVLGGVDNIWIKPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVN 186
KLAAA+LGG+D I IKPG +V+YLGAASGTTVSHVSDIVGP G+VYAVEFSHRSGRDL+N
Sbjct: 139 KLAAAILGGIDQIHIKPGVKVMYLGAASGTTVSHVSDIVGPEGLVYAVEFSHRSGRDLLN 198
Query: 187 MAKKRTNVIPIIEDARHPAKYRMLVGMVDVIFSDVAQPDQARILALNASYFLKAGGHFVI 246
+AKKRTN+IPIIEDARHP KYRMLVGMVDVIF+DVAQPDQ RI+ALNA FLK GGHFVI
Sbjct: 199 VAKKRTNIIPIIEDARHPHKYRMLVGMVDVIFADVAQPDQTRIVALNAHNFLKNGGHFVI 258
Query: 247 SIKANCIDSTVPAEAVFQSEVKKLQQDQFKPFEQVTLEPFERDHACVVGGYRMPKKQK 304
SIKANCIDST EAVF SEVKK+ + KP EQ+TLEP+ERDHA VVG YR P K K
Sbjct: 259 SIKANCIDSTAAPEAVFASEVKKMSAENMKPQEQLTLEPYERDHAVVVGIYRPPPKGK 316
|
|
| UNIPROTKB|Q8I1F4 Fib "rRNA 2'-O-methyltransferase fibrillarin" [Drosophila erecta (taxid:7220)] | Back alignment and assigned GO terms |
|---|
Score = 960 (343.0 bits), Expect = 1.4e-96, P = 1.4e-96
Identities = 183/235 (77%), Positives = 207/235 (88%)
Query: 69 VVVEPHRHEGVFIAKGKEDALVTKNLVAGEAVYNEKRISVQNEDGTKVEYRIWNPFRSKL 128
V +EPHRHEGVFIA+GKEDALVT+N V G VY EKRISV+N +G K+EYR+WNPFRSKL
Sbjct: 112 VTIEPHRHEGVFIARGKEDALVTRNFVPGSEVYGEKRISVEN-NGEKIEYRVWNPFRSKL 170
Query: 129 AAAVLGGVDNIWIKPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMA 188
AAAVLGGV+ I + PG++VLYLGAASGTTVSHVSD+VGP G+VYAVEFSHRSGRDL+N+A
Sbjct: 171 AAAVLGGVEQIHMPPGSKVLYLGAASGTTVSHVSDVVGPEGLVYAVEFSHRSGRDLINVA 230
Query: 189 KKRTNVIPIIEDARHPAKYRMLVGMVDVIFSDVAQPDQARILALNASYFLKAGGHFVISI 248
KKRTN+IPIIEDARHP KYRMLVGMVD IF+DVAQPDQ RI+ALNA +FLK GGHFVISI
Sbjct: 231 KKRTNIIPIIEDARHPHKYRMLVGMVDTIFADVAQPDQGRIVALNAQHFLKNGGHFVISI 290
Query: 249 KANCIDSTVPAEAVFQSEVKKLQQDQFKPFEQVTLEPFERDHACVVGGYRMPKKQ 303
KA+CIDST EAVF SEVKK+Q D+ KP EQ+TLEP+ERDHA VVG YR P KQ
Sbjct: 291 KASCIDSTAQPEAVFASEVKKMQADKLKPQEQLTLEPYERDHAVVVGVYRPPPKQ 345
|
|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries 
Original result of BLAST against SWISS-PROT
ID ![]() | Name ![]() | Annotated EC number ![]() | Identity ![]() | Query coverage ![]() | Hit coverage ![]() | RBH(Q2H) ![]() | RBH(H2Q) ![]() |
| Q9HE26 | FBRL_NEUCR | 2, ., 1, ., 1, ., - | 0.7058 | 0.7573 | 0.7151 | N/A | no |
| P0CW09 | FLPA_METMA | 2, ., 1, ., 1, ., - | 0.5022 | 0.6918 | 0.9295 | yes | no |
| P35549 | FBRL_LEIMA | 2, ., 1, ., 1, ., - | 0.6584 | 0.7836 | 0.8047 | yes | no |
| P22509 | FBRL_RAT | 2, ., 1, ., 1, ., - | 0.7759 | 0.7868 | 0.7339 | yes | no |
| P22232 | FBRL_XENLA | 2, ., 1, ., 1, ., - | 0.7857 | 0.7704 | 0.7275 | N/A | no |
| C5A403 | FLPA_THEGJ | 2, ., 1, ., 1, ., - | 0.5176 | 0.7147 | 0.9646 | yes | no |
| P15646 | FBRL_YEAST | 2, ., 1, ., 1, ., - | 0.7161 | 0.7540 | 0.7033 | yes | no |
| Q6FN88 | FBRL_CANGA | 2, ., 1, ., 1, ., - | 0.7046 | 0.7508 | 0.7089 | yes | no |
| C6A2L3 | FLPA_THESM | 2, ., 1, ., 1, ., - | 0.5044 | 0.7147 | 0.9646 | yes | no |
| Q6BQ34 | FBRL_DEBHA | 2, ., 1, ., 1, ., - | 0.6949 | 0.7540 | 0.6990 | yes | no |
| P22087 | FBRL_HUMAN | 2, ., 1, ., 1, ., - | 0.7759 | 0.7868 | 0.7476 | yes | no |
| Q9W1V3 | FBRL_DROME | 2, ., 1, ., 1, ., - | 0.7702 | 0.7672 | 0.6802 | yes | no |
| P35550 | FBRL_MOUSE | 2, ., 1, ., 1, ., - | 0.7759 | 0.7868 | 0.7339 | yes | no |
| P35551 | FBRL_SCHPO | 2, ., 1, ., 1, ., - | 0.7575 | 0.7573 | 0.7573 | yes | no |
| Q5JFN1 | FLPA_PYRKO | 2, ., 1, ., 1, ., - | 0.5176 | 0.7147 | 0.9646 | yes | no |
| Q8SR42 | FBRL_ENCCU | 2, ., 1, ., 1, ., - | 0.5977 | 0.8590 | 0.9003 | yes | no |
| Q9FEF8 | MD36B_ARATH | 2, ., 1, ., 1, ., - | 0.9382 | 0.7967 | 0.7889 | no | no |
| Q94AH9 | MD36A_ARATH | 2, ., 1, ., 1, ., - | 0.9382 | 0.7967 | 0.7593 | yes | no |
| Q22053 | FBRL_CAEEL | 2, ., 1, ., 1, ., - | 0.7299 | 0.7737 | 0.6704 | yes | no |
| Q756P0 | FBRL_ASHGO | 2, ., 1, ., 1, ., - | 0.7033 | 0.7540 | 0.7055 | yes | no |
| Q8I1F4 | FBRL_DROER | 2, ., 1, ., 1, ., - | 0.7787 | 0.7672 | 0.6782 | N/A | no |
| Q55CW0 | FBRL_DICDI | 2, ., 1, ., 1, ., - | 0.6557 | 0.7836 | 0.7155 | yes | no |
| B6YXH6 | FLPA_THEON | 2, ., 1, ., 1, ., - | 0.5132 | 0.7147 | 0.9646 | yes | no |
EC Number Prediction by Ezypred Server 
Original result from Ezypred Server
Fail to connect to Ezypred Server
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING 
Original result from the STRING server
| Your Input: | |||||||||||
| FIB2 | FIB2 (FIBRILLARIN 2); snoRNA binding; encodes a fibrillarin, a key nucleolar protein in eukaryotes which associates with box C/D small nucleolar RNAs (snoRNAs) directing 2'-O-ribose methylation of the rRNA. This gene also encodes a novel box C/D snoRNA, U60.2f in its fifth intron that accumulates in seedlings and that their targeted residue on the 25 S rRNA is methylated. ; Involved in pre-rRNA processing. Utilizes the methyl donor S-adenosyl-L-methionine to catalyze the site-specific 2'- hydroxyl methylation of ribose moieties in pre-ribosomal RNA. Site specificity is provided by a gu [...] (320 aa) | ||||||||||
(Arabidopsis thaliana) | |||||||||||
Predicted Functional Partners: | |||||||||||
| NOP56 | NOP56 (Arabidopsis homolog of nucleolar protein Nop56); NOP56-like protein (522 aa) | • | • | • | • | • | 0.996 | ||||
| PRMT1A | PRMT1A (PROTEIN ARGININE METHYLTRANSFERASE 1A); protein-arginine N-methyltransferase; PROTEIN A [...] (366 aa) | • | • | • | 0.992 | ||||||
| NAP57 | NAP57 (Arabidopsis thaliana homologue of NAP57); pseudouridine synthase; Encodes a putative pse [...] (565 aa) | • | • | • | • | 0.986 | |||||
| PRMT11 | PRMT11 (ARGININE METHYLTRANSFERASE 11); protein-arginine N-methyltransferase; Has arginine N-me [...] (390 aa) | • | • | • | 0.983 | ||||||
| AT3G21350 | RNA polymerase transcriptional regulation mediator-related; RNA polymerase transcriptional regu [...] (298 aa) | • | • | 0.960 | |||||||
| AT1G15440 | transducin family protein / WD-40 repeat family protein; transducin family protein / WD-40 repe [...] (900 aa) | • | • | • | 0.958 | ||||||
| AT4G12600 | ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein; ribosomal protein L7Ae/L30e/S12e/Gadd45 [...] (128 aa) | • | • | • | 0.957 | ||||||
| AT3G05060 | SAR DNA-binding protein, putative; SAR DNA-binding protein, putative, strong similarity to SAR [...] (533 aa) | • | • | • | • | 0.957 | |||||
| AT3G12860 | nucleolar protein Nop56, putative; nucleolar protein Nop56, putative; INVOLVED IN- biological_p [...] (499 aa) | • | • | • | • | • | 0.952 | ||||
| AT3G21540 | transducin family protein / WD-40 repeat family protein; transducin family protein / WD-40 repe [...] (955 aa) | • | • | • | 0.951 | ||||||
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST 
Original result of RPS-BLAST against CDD database part I
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() |
| Query | 305 | |||
| pfam01269 | 229 | pfam01269, Fibrillarin, Fibrillarin | 1e-163 | |
| PTZ00146 | 293 | PTZ00146, PTZ00146, fibrillarin; Provisional | 1e-162 | |
| COG1889 | 231 | COG1889, NOP1, Fibrillarin-like rRNA methylase [Tr | 1e-120 | |
| PRK04266 | 226 | PRK04266, PRK04266, fibrillarin; Provisional | 1e-103 | |
| pfam05918 | 543 | pfam05918, API5, Apoptosis inhibitory protein 5 (A | 6e-07 | |
| PRK06958 | 182 | PRK06958, PRK06958, single-stranded DNA-binding pr | 7e-07 | |
| PRK06958 | 182 | PRK06958, PRK06958, single-stranded DNA-binding pr | 1e-06 | |
| PHA00370 | 297 | PHA00370, III, attachment protein | 2e-06 | |
| PRK06958 | 182 | PRK06958, PRK06958, single-stranded DNA-binding pr | 2e-05 | |
| COG0293 | 205 | COG0293, FtsJ, 23S rRNA methylase [Translation, ri | 2e-05 | |
| PRK10590 | 456 | PRK10590, PRK10590, ATP-dependent RNA helicase Rhl | 2e-05 | |
| pfam13847 | 151 | pfam13847, Methyltransf_31, Methyltransferase doma | 5e-05 | |
| PRK10590 | 456 | PRK10590, PRK10590, ATP-dependent RNA helicase Rhl | 1e-04 | |
| pfam07172 | 91 | pfam07172, GRP, Glycine rich protein family | 1e-04 | |
| PRK11634 | 629 | PRK11634, PRK11634, ATP-dependent RNA helicase Dea | 1e-04 | |
| pfam07172 | 91 | pfam07172, GRP, Glycine rich protein family | 2e-04 | |
| PRK11634 | 629 | PRK11634, PRK11634, ATP-dependent RNA helicase Dea | 2e-04 | |
| PRK11634 | 629 | PRK11634, PRK11634, ATP-dependent RNA helicase Dea | 2e-04 | |
| PRK06341 | 166 | PRK06341, PRK06341, single-stranded DNA-binding pr | 2e-04 | |
| PRK11634 | 629 | PRK11634, PRK11634, ATP-dependent RNA helicase Dea | 3e-04 | |
| PRK14902 | 444 | PRK14902, PRK14902, 16S rRNA methyltransferase B; | 3e-04 | |
| PRK10590 | 456 | PRK10590, PRK10590, ATP-dependent RNA helicase Rhl | 4e-04 | |
| PRK10590 | 456 | PRK10590, PRK10590, ATP-dependent RNA helicase Rhl | 5e-04 | |
| COG0144 | 355 | COG0144, Sun, tRNA and rRNA cytosine-C5-methylases | 5e-04 | |
| PRK14279 | 392 | PRK14279, PRK14279, chaperone protein DnaJ; Provis | 5e-04 | |
| PRK11634 | 629 | PRK11634, PRK11634, ATP-dependent RNA helicase Dea | 6e-04 | |
| PRK04537 | 572 | PRK04537, PRK04537, ATP-dependent RNA helicase Rhl | 7e-04 | |
| COG1512 | 271 | COG1512, COG1512, Beta-propeller domains of methan | 8e-04 | |
| COG1512 | 271 | COG1512, COG1512, Beta-propeller domains of methan | 9e-04 | |
| TIGR00438 | 188 | TIGR00438, rrmJ, cell division protein FtsJ | 0.002 | |
| TIGR04260 | 119 | TIGR04260, Cyano_gly_rpt, rSAM-associated Gly-rich | 0.002 | |
| COG2519 | 256 | COG2519, GCD14, tRNA(1-methyladenosine) methyltran | 0.002 | |
| PRK12678 | 672 | PRK12678, PRK12678, transcription termination fact | 0.002 | |
| PRK12678 | 672 | PRK12678, PRK12678, transcription termination fact | 0.002 | |
| pfam01728 | 177 | pfam01728, FtsJ, FtsJ-like methyltransferase | 0.002 | |
| pfam12810 | 248 | pfam12810, Gly_rich, Glycine rich protein | 0.003 | |
| pfam13779 | 820 | pfam13779, DUF4175, Domain of unknown function (DU | 0.003 | |
| PRK12678 | 672 | PRK12678, PRK12678, transcription termination fact | 0.004 | |
| smart00157 | 218 | smart00157, PRP, Major prion protein | 0.004 | |
| pfam07466 | 280 | pfam07466, DUF1517, Protein of unknown function (D | 0.004 |
| >gnl|CDD|201699 pfam01269, Fibrillarin, Fibrillarin | Back alignment and domain information |
|---|
Score = 452 bits (1166), Expect = e-163
Identities = 170/229 (74%), Positives = 195/229 (85%), Gaps = 2/229 (0%)
Query: 71 VEPH-RHEGVFIAKGKEDALVTKNLVAGEAVYNEKRISVQNEDGTKVEYRIWNPFRSKLA 129
VEPH RHEGV+I +G DAL TKNLV G++VY EKRI V+ E+ K+EYR+WNPFRSKLA
Sbjct: 1 VEPHERHEGVYIVRGDGDALATKNLVPGKSVYGEKRIKVEGEEM-KIEYRVWNPFRSKLA 59
Query: 130 AAVLGGVDNIWIKPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAK 189
AA+L G+DNI IKPG++VLYLGAASGTTVSHVSDIVGP GVVYAVEFS R GR+L+NMAK
Sbjct: 60 AAILKGLDNIPIKPGSKVLYLGAASGTTVSHVSDIVGPEGVVYAVEFSPRVGRELINMAK 119
Query: 190 KRTNVIPIIEDARHPAKYRMLVGMVDVIFSDVAQPDQARILALNASYFLKAGGHFVISIK 249
KR N++PI+EDARHP KYRMLV MVDVIF+DVAQPDQARILALNA YFLK GG+F+ISIK
Sbjct: 120 KRPNIVPILEDARHPQKYRMLVEMVDVIFADVAQPDQARILALNAKYFLKNGGYFMISIK 179
Query: 250 ANCIDSTVPAEAVFQSEVKKLQQDQFKPFEQVTLEPFERDHACVVGGYR 298
A ID T E VF EV+KL+++ FKP EQVTLEP+ERDHA VVG YR
Sbjct: 180 ARSIDVTKEPEEVFAEEVEKLKEEGFKPKEQVTLEPYERDHAMVVGKYR 228
|
Length = 229 |
| >gnl|CDD|240291 PTZ00146, PTZ00146, fibrillarin; Provisional | Back alignment and domain information |
|---|
Score = 452 bits (1164), Expect = e-162
Identities = 222/299 (74%), Positives = 248/299 (82%), Gaps = 8/299 (2%)
Query: 8 GGGGGFRGGRGDGGGRGRGGGRGGGGGRGGGSAMRGRGGGRGGGRGGGR-GRGGGGMKGG 66
G GGGF GGRG G G G GGGRGGGG GG RGGGRG GRGGG GRGGGG G
Sbjct: 1 GMGGGFGGGRGGGRGGGGGGGRGGGGRGGG------RGGGRGRGRGGGGGGRGGGGGGGP 54
Query: 67 SKVVVEPHRHEGVFIAKGKEDALVTKNLVAGEAVYNEKRISVQNEDGT-KVEYRIWNPFR 125
KV+V PHR GVFIAKGK DALVTKN+V GE+VY EKRISV++ +G K+EYR+WNPFR
Sbjct: 55 GKVIVVPHRFPGVFIAKGKSDALVTKNMVPGESVYGEKRISVEDAEGGEKIEYRVWNPFR 114
Query: 126 SKLAAAVLGGVDNIWIKPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLV 185
SKLAAA++GGV NI IKPG++VLYLGAASGTTVSHVSD+VGP GVVYAVEFSHRSGRDL
Sbjct: 115 SKLAAAIIGGVANIPIKPGSKVLYLGAASGTTVSHVSDLVGPEGVVYAVEFSHRSGRDLT 174
Query: 186 NMAKKRTNVIPIIEDARHPAKYRMLVGMVDVIFSDVAQPDQARILALNASYFLKAGGHFV 245
NMAKKR N++PIIEDAR+P KYRMLV MVDVIF+DVAQPDQARI+ALNA YFLK GGHF+
Sbjct: 175 NMAKKRPNIVPIIEDARYPQKYRMLVPMVDVIFADVAQPDQARIVALNAQYFLKNGGHFI 234
Query: 246 ISIKANCIDSTVPAEAVFQSEVKKLQQDQFKPFEQVTLEPFERDHACVVGGYRMPKKQK 304
ISIKANCIDST E VF SEV+KL+++ KP EQ+TLEPFERDHA V+G YR KK+K
Sbjct: 235 ISIKANCIDSTAKPEVVFASEVQKLKKEGLKPKEQLTLEPFERDHAVVIGVYRPVKKKK 293
|
Length = 293 |
| >gnl|CDD|224801 COG1889, NOP1, Fibrillarin-like rRNA methylase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Score = 345 bits (886), Expect = e-120
Identities = 140/236 (59%), Positives = 173/236 (73%), Gaps = 9/236 (3%)
Query: 66 GSKVVVEPH-RHEGVFIAKGKE--DALVTKNLVAGEAVYNEKRISVQNEDGTKVEYRIWN 122
G+ V V+PH R EGV+I + K+ D L TKNLV GE VY E+ I V+ E EYR WN
Sbjct: 1 GAMVEVKPHERFEGVYIVRFKDGSDRLATKNLVPGERVYGERIIKVEGE-----EYREWN 55
Query: 123 PFRSKLAAAVLGGVDNIWIKPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGR 182
P RSKLAAA+L G+ N IK G++VLYLGAASGTTVSHVSDIVG G +YAVEFS R R
Sbjct: 56 PRRSKLAAAILKGLKNFPIKEGSKVLYLGAASGTTVSHVSDIVG-EGRIYAVEFSPRPMR 114
Query: 183 DLVNMAKKRTNVIPIIEDARHPAKYRMLVGMVDVIFSDVAQPDQARILALNASYFLKAGG 242
+L+++A+KR N+IPI+EDAR P KYR LV VDVI+ DVAQP+QA ILA NA +FLK GG
Sbjct: 115 ELLDVAEKRPNIIPILEDARKPEKYRHLVEKVDVIYQDVAQPNQAEILADNAEFFLKKGG 174
Query: 243 HFVISIKANCIDSTVPAEAVFQSEVKKLQQDQFKPFEQVTLEPFERDHACVVGGYR 298
+ VI+IKA ID T E VF+ EV+KL++ F+ E V LEP+E+DHA +V Y+
Sbjct: 175 YVVIAIKARSIDVTADPEEVFKDEVEKLEEGGFEILEVVDLEPYEKDHALIVAKYK 230
|
Length = 231 |
| >gnl|CDD|235267 PRK04266, PRK04266, fibrillarin; Provisional | Back alignment and domain information |
|---|
Score = 300 bits (770), Expect = e-103
Identities = 117/231 (50%), Positives = 155/231 (67%), Gaps = 8/231 (3%)
Query: 70 VVEPHRHEGVFI--AKGKEDALVTKNLVAGEAVYNEKRISVQNEDGTKVEYRIWNPFRSK 127
V + EGV+ + L TKNLV G+ VY E+ I + VEYR WNP RSK
Sbjct: 2 VKKKEIFEGVYEVEFEDGSKRLATKNLVPGKRVYGERLIKWEG-----VEYREWNPRRSK 56
Query: 128 LAAAVLGGVDNIWIKPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNM 187
LAAA+L G+ N IK G++VLYLGAASGTTVSHVSDIV GVVYAVEF+ R R+L+ +
Sbjct: 57 LAAAILKGLKNFPIKKGSKVLYLGAASGTTVSHVSDIVE-EGVVYAVEFAPRPMRELLEV 115
Query: 188 AKKRTNVIPIIEDARHPAKYRMLVGMVDVIFSDVAQPDQARILALNASYFLKAGGHFVIS 247
A++R N+IPI+ DAR P +Y +V VDVI+ DVAQP+QA I NA +FLK GG+ +++
Sbjct: 116 AEERKNIIPILADARKPERYAHVVEKVDVIYQDVAQPNQAEIAIDNAEFFLKDGGYLLLA 175
Query: 248 IKANCIDSTVPAEAVFQSEVKKLQQDQFKPFEQVTLEPFERDHACVVGGYR 298
IKA ID T + +F+ E++KL++ F+ E V LEP+ +DHA VV +
Sbjct: 176 IKARSIDVTKDPKEIFKEEIRKLEEGGFEILEVVDLEPYHKDHAAVVARKK 226
|
Length = 226 |
| >gnl|CDD|218811 pfam05918, API5, Apoptosis inhibitory protein 5 (API5) | Back alignment and domain information |
|---|
Score = 50.0 bits (119), Expect = 6e-07
Identities = 24/68 (35%), Positives = 27/68 (39%), Gaps = 15/68 (22%)
Query: 2 RPPRGRGGGGGFRGGRGDGG----------GRGRGGGRGGGGGRGGGSAMRGRGGGRGGG 51
RP G+G + R G + G GG GR RGRG G GGG
Sbjct: 479 RPANGKGNNVPAKKSRPSNDQKQYVNKSGEGISKVGQSYGGRGRT-----RGRGRGGGGG 533
Query: 52 RGGGRGRG 59
RG G RG
Sbjct: 534 RGRGYNRG 541
|
This family consists of apoptosis inhibitory protein 5 (API5) sequences from several organisms. Apoptosis or programmed cell death is a physiological form of cell death that occurs in embryonic development and organ formation. It is characterized by biochemical and morphological changes such as DNA fragmentation and cell volume shrinkage. API5 is an anti apoptosis gene located in human chromosome 11, whose expression prevents the programmed cell death that occurs upon the deprivation of growth factors. Length = 543 |
| >gnl|CDD|180777 PRK06958, PRK06958, single-stranded DNA-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 48.3 bits (115), Expect = 7e-07
Identities = 32/57 (56%), Positives = 32/57 (56%), Gaps = 4/57 (7%)
Query: 6 GRGGGGGFRGGRGDGGGRGRGGGRGGGGGRGGGSAMRGRGGGRGGGRGGGRGRGGGG 62
GRGG GG GG GD GG G GGG GGGG G R GGG GGG G GGG
Sbjct: 110 GRGGSGG-GGGGGDEGGYGGGGGGGGGGYGGE---SRSGGGGGRASGGGGGGAGGGA 162
|
Length = 182 |
| >gnl|CDD|180777 PRK06958, PRK06958, single-stranded DNA-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 47.5 bits (113), Expect = 1e-06
Identities = 28/53 (52%), Positives = 28/53 (52%)
Query: 15 GGRGDGGGRGRGGGRGGGGGRGGGSAMRGRGGGRGGGRGGGRGRGGGGMKGGS 67
GGRG GG G GG GG GG GGG G R GG GG GGGG GG
Sbjct: 109 GGRGGSGGGGGGGDEGGYGGGGGGGGGGYGGESRSGGGGGRASGGGGGGAGGG 161
|
Length = 182 |
| >gnl|CDD|164795 PHA00370, III, attachment protein | Back alignment and domain information |
|---|
Score = 48.0 bits (114), Expect = 2e-06
Identities = 30/78 (38%), Positives = 34/78 (43%)
Query: 16 GRGDGGGRGRGGGRGGGGGRGGGSAMRGRGGGRGGGRGGGRGRGGGGMKGGSKVVVEPHR 75
G G G G GG GGG GGGS GG GGG GG GG K +K V
Sbjct: 86 GGGTGEGGSDTGGDTGGGNTGGGSGGGDTGGSGGGGSDGGGSEGGSTGKSLTKEGVGAGD 145
Query: 76 HEGVFIAKGKEDALVTKN 93
+ +A +DAL N
Sbjct: 146 FDYPKMANANKDALTEDN 163
|
Length = 297 |
| >gnl|CDD|180777 PRK06958, PRK06958, single-stranded DNA-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 44.0 bits (104), Expect = 2e-05
Identities = 29/55 (52%), Positives = 29/55 (52%), Gaps = 1/55 (1%)
Query: 2 RPPRGRGGGGGFRGGRGDGGGRGRGGGRGGGGGRGGGSAMRGRGGGRGGGRGGGR 56
R G GGGGG GG G GGG G GGG GG GGG GGG G G G R
Sbjct: 111 RGGSGGGGGGGDEGGYG-GGGGGGGGGYGGESRSGGGGGRASGGGGGGAGGGASR 164
|
Length = 182 |
| >gnl|CDD|223370 COG0293, FtsJ, 23S rRNA methylase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Score = 44.5 bits (106), Expect = 2e-05
Identities = 38/126 (30%), Positives = 50/126 (39%), Gaps = 27/126 (21%)
Query: 141 IKPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKRTNVIPIIED 200
KPG V+ LGAA G + +G G + AV D++ M K VI + D
Sbjct: 43 FKPGMVVVDLGAAPGGWSQVAAKKLGAGGKIVAV--------DILPM-KPIPGVIFLQGD 93
Query: 201 ARHP---AKYRMLVG--MVDVIFSDVAQP-------DQARILALN------ASYFLKAGG 242
K +G VDV+ SD+A D AR + L A LK GG
Sbjct: 94 ITDEDTLEKLLEALGGAPVDVVLSDMAPNTSGNRSVDHARSMYLCELALEFALEVLKPGG 153
Query: 243 HFVISI 248
FV +
Sbjct: 154 SFVAKV 159
|
Length = 205 |
| >gnl|CDD|236722 PRK10590, PRK10590, ATP-dependent RNA helicase RhlE; Provisional | Back alignment and domain information |
|---|
Score = 45.2 bits (107), Expect = 2e-05
Identities = 20/63 (31%), Positives = 25/63 (39%), Gaps = 2/63 (3%)
Query: 6 GRGGGGGFRGGRGDGGGRGRGGGRGGGGGRGGGSAMRGRGGGRGGGRGGGRGRGGGGMKG 65
GR GG GGRG GGGRG+ G+ G G SA G + G +
Sbjct: 390 GRQQRGG--GGRGQGGGRGQQQGQPRRGEGGAKSASAKPAEKPSRRLGDAKPAGEQQRRR 447
Query: 66 GSK 68
+
Sbjct: 448 RPR 450
|
Length = 456 |
| >gnl|CDD|222415 pfam13847, Methyltransf_31, Methyltransferase domain | Back alignment and domain information |
|---|
Score = 42.4 bits (100), Expect = 5e-05
Identities = 34/159 (21%), Positives = 61/159 (38%), Gaps = 26/159 (16%)
Query: 141 IKPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKR------TNV 194
+K G +VL LG +G +++ +GP V ++ S + + AK+ NV
Sbjct: 1 LKSGIKVLDLGCGTGYLTFILAEKLGPGAEVVGIDIS----EEAIEKAKENAKKLGYENV 56
Query: 195 IPIIEDARHPAKYRMLVGMVDVIFSDV---AQPDQARILALNASYFLKAGGHFVISIKAN 251
I D + ++ DV+ S+ PD ++L LK GG ++S
Sbjct: 57 EFIQGDIEELPQLQLEDNSFDVVISNEVLNHLPDPDKVLE-EIIRVLKPGGVLIVS---- 111
Query: 252 CIDSTVPAEAVFQSEVKKLQQDQFKPFEQVTLEPFERDH 290
+ V SE+ L +D + + V +
Sbjct: 112 --------DPVLLSELPALLEDLERLYAGVLEGAIGKKK 142
|
This family appears to be have methyltransferase activity. Length = 151 |
| >gnl|CDD|236722 PRK10590, PRK10590, ATP-dependent RNA helicase RhlE; Provisional | Back alignment and domain information |
|---|
Score = 42.9 bits (101), Expect = 1e-04
Identities = 19/59 (32%), Positives = 22/59 (37%), Gaps = 3/59 (5%)
Query: 2 RPPRGRGGGGGFRGGRGDGGGRGR--GGGRGGGGGRGGGSAMRGRGGGRGGGRGGGRGR 58
R RG GG G GGRG G+ R GG + R G + G R R
Sbjct: 391 RQQRGGGGRGQ-GGGRGQQQGQPRRGEGGAKSASAKPAEKPSRRLGDAKPAGEQQRRRR 448
|
Length = 456 |
| >gnl|CDD|219320 pfam07172, GRP, Glycine rich protein family | Back alignment and domain information |
|---|
Score = 40.1 bits (94), Expect = 1e-04
Identities = 28/48 (58%), Positives = 28/48 (58%)
Query: 19 DGGGRGRGGGRGGGGGRGGGSAMRGRGGGRGGGRGGGRGRGGGGMKGG 66
D G G GG GGGGG GG G GGG GGG GG G GGGG GG
Sbjct: 43 DKYGGGGGGYGGGGGGGYGGGGYYGGGGGYGGGGGGYPGGGGGGYGGG 90
|
This family of proteins includes several glycine rich proteins as well as two nodulins 16 and 24. The family also contains proteins that are induced in response to various stresses. Length = 91 |
| >gnl|CDD|236941 PRK11634, PRK11634, ATP-dependent RNA helicase DeaD; Provisional | Back alignment and domain information |
|---|
Score = 42.9 bits (101), Expect = 1e-04
Identities = 21/50 (42%), Positives = 21/50 (42%), Gaps = 4/50 (8%)
Query: 10 GGGFRGGRGDGGGRGRGGGRGGGGGRGGGSAMRGRGGGRGGGRGGGRGRG 59
GG RGG GG R GGR G R G GRG GR GR
Sbjct: 568 GGERRGGGRGFGGERREGGRNFSGERREG----GRGDGRRFSGERREGRA 613
|
Length = 629 |
| >gnl|CDD|219320 pfam07172, GRP, Glycine rich protein family | Back alignment and domain information |
|---|
Score = 39.7 bits (93), Expect = 2e-04
Identities = 29/51 (56%), Positives = 29/51 (56%), Gaps = 4/51 (7%)
Query: 10 GGGFRGGRGDGGGRGRGGGRGGGGGRGGGSAMRGRGGGRGGGRGGGRGRGG 60
GG GG G GGG GG GGGG GGG G GGG GG GGG G GG
Sbjct: 45 YGGGGGGYGGGGG----GGYGGGGYYGGGGGYGGGGGGYPGGGGGGYGGGG 91
|
This family of proteins includes several glycine rich proteins as well as two nodulins 16 and 24. The family also contains proteins that are induced in response to various stresses. Length = 91 |
| >gnl|CDD|236941 PRK11634, PRK11634, ATP-dependent RNA helicase DeaD; Provisional | Back alignment and domain information |
|---|
Score = 42.9 bits (101), Expect = 2e-04
Identities = 18/54 (33%), Positives = 18/54 (33%)
Query: 7 RGGGGGFRGGRGDGGGRGRGGGRGGGGGRGGGSAMRGRGGGRGGGRGGGRGRGG 60
GG GGRG GG R GG G R GG R G R
Sbjct: 566 HTGGERRGGGRGFGGERREGGRNFSGERREGGRGDGRRFSGERREGRAPRRDDS 619
|
Length = 629 |
| >gnl|CDD|236941 PRK11634, PRK11634, ATP-dependent RNA helicase DeaD; Provisional | Back alignment and domain information |
|---|
Score = 42.5 bits (100), Expect = 2e-04
Identities = 22/53 (41%), Positives = 23/53 (43%), Gaps = 1/53 (1%)
Query: 6 GRGGGGGFRGGRGDGGGRGRGGGRGGGGGRGGGSAMRGRGGGRGGGRGGGRGR 58
RGGG GF G R +GG R G R GG G R GR R GR
Sbjct: 571 RRGGGRGFGGERREGG-RNFSGERREGGRGDGRRFSGERREGRAPRRDDSTGR 622
|
Length = 629 |
| >gnl|CDD|235782 PRK06341, PRK06341, single-stranded DNA-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 41.3 bits (97), Expect = 2e-04
Identities = 20/44 (45%), Positives = 21/44 (47%)
Query: 15 GGRGDGGGRGRGGGRGGGGGRGGGSAMRGRGGGRGGGRGGGRGR 58
GRG+GGG G GG GGGG G RG G GG R
Sbjct: 115 DGRGEGGGGGGGGDDGGGGDFGSSGPSRGGPRPASSGGGGNFSR 158
|
Length = 166 |
| >gnl|CDD|236941 PRK11634, PRK11634, ATP-dependent RNA helicase DeaD; Provisional | Back alignment and domain information |
|---|
Score = 42.1 bits (99), Expect = 3e-04
Identities = 20/49 (40%), Positives = 20/49 (40%), Gaps = 1/49 (2%)
Query: 13 FRGGRGDGGGRGRGGGRGGGGGRGGGSAMRGRGGGRGGGRGGGRGRGGG 61
GG GGGRG GG R GG R R G G G G R G
Sbjct: 566 HTGGERRGGGRGFGGERREGG-RNFSGERREGGRGDGRRFSGERREGRA 613
|
Length = 629 |
| >gnl|CDD|237857 PRK14902, PRK14902, 16S rRNA methyltransferase B; Provisional | Back alignment and domain information |
|---|
Score = 41.7 bits (99), Expect = 3e-04
Identities = 49/202 (24%), Positives = 74/202 (36%), Gaps = 54/202 (26%)
Query: 77 EGVFIAKGK--EDALV-TKNLVAGEAVYNEKRISVQNEDGTKVEYRIWNPFRSKLAAAVL 133
EG + + +ALV K +AG ++ + I++Q+E S L A L
Sbjct: 200 EGYEVEESLLSPEALVIEKGNIAGTDLFKDGLITIQDES-------------SMLVAPAL 246
Query: 134 GGVDNIWIKPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKR-- 191
K G VL AA G +H+++++ G V A++ H L+ KR
Sbjct: 247 D------PKGGDTVLDACAAPGGKTTHIAELLKNTGKVVALDI-HEHKLKLIEENAKRLG 299
Query: 192 -TNVIPIIEDARHPAKYRMLVGMVDVIFSDVA---------QPD---------------- 225
TN+ DAR + D I D +PD
Sbjct: 300 LTNIETKALDARKVHEK--FAEKFDKILVDAPCSGLGVIRRKPDIKYNKTKEDIESLQEI 357
Query: 226 QARILALNASYFLKAGGHFVIS 247
Q IL + + +LK GG V S
Sbjct: 358 QLEILE-SVAQYLKKGGILVYS 378
|
Length = 444 |
| >gnl|CDD|236722 PRK10590, PRK10590, ATP-dependent RNA helicase RhlE; Provisional | Back alignment and domain information |
|---|
Score = 41.3 bits (97), Expect = 4e-04
Identities = 18/62 (29%), Positives = 23/62 (37%), Gaps = 1/62 (1%)
Query: 14 RGGRGDGGGRGRGGGRGGGGGRGGGSAMRGRGGGRGGGRGGGRGRGGGGMKGGSKVVVEP 73
R RG GGGRG+GGGRG G+ + R G G + P
Sbjct: 391 RQQRG-GGGRGQGGGRGQQQGQPRRGEGGAKSASAKPAEKPSRRLGDAKPAGEQQRRRRP 449
Query: 74 HR 75
+
Sbjct: 450 RK 451
|
Length = 456 |
| >gnl|CDD|236722 PRK10590, PRK10590, ATP-dependent RNA helicase RhlE; Provisional | Back alignment and domain information |
|---|
Score = 40.9 bits (96), Expect = 5e-04
Identities = 18/57 (31%), Positives = 21/57 (36%)
Query: 19 DGGGRGRGGGRGGGGGRGGGSAMRGRGGGRGGGRGGGRGRGGGGMKGGSKVVVEPHR 75
+G + GGGRG GGGRG RG G G +K E R
Sbjct: 389 NGRQQRGGGGRGQGGGRGQQQGQPRRGEGGAKSASAKPAEKPSRRLGDAKPAGEQQR 445
|
Length = 456 |
| >gnl|CDD|223222 COG0144, Sun, tRNA and rRNA cytosine-C5-methylases [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Score = 40.8 bits (96), Expect = 5e-04
Identities = 50/163 (30%), Positives = 65/163 (39%), Gaps = 40/163 (24%)
Query: 126 SKLAAAVLGGVDNIWIKPGARVLYLGAASGTTVSHVSDIVGPNG-VVYAVEFSHRSGRDL 184
S+L A VL KPG RVL L AA G +H+++++ G +V AV+ S + + L
Sbjct: 145 SQLPALVLD------PKPGERVLDLCAAPGGKTTHLAELMENEGAIVVAVDVSPKRLKRL 198
Query: 185 VNMAKKR--TNVIPIIEDARHPAKYRMLVGMVDVIFSDV---------AQPD-------- 225
K+ NVI + +DAR A+ D I D PD
Sbjct: 199 RENLKRLGVRNVIVVNKDARRLAELLPGGEKFDRILLDAPCSGTGVIRRDPDVKWRRTPE 258
Query: 226 --------QARILALNASYFLKAGGHFVISIKANCIDSTVPAE 260
Q ILA A LK GG V S C S P E
Sbjct: 259 DIAELAKLQKEILA-AALKLLKPGGVLVYS---TC--SLTPEE 295
|
Length = 355 |
| >gnl|CDD|237655 PRK14279, PRK14279, chaperone protein DnaJ; Provisional | Back alignment and domain information |
|---|
Score = 40.9 bits (96), Expect = 5e-04
Identities = 29/59 (49%), Positives = 30/59 (50%), Gaps = 7/59 (11%)
Query: 9 GGGGFRGGRGDGGGRGRGGGRGGGGGRG------GGSAMRGRGGGRGGGRGGGRGRGGG 61
GGGF G R DGGG G GG GG G +A RG GGG G GG RGGG
Sbjct: 79 AGGGFGGRRFDGGG-GFGGFGTGGDGAEFNLNDLFDAAGRGGGGGIGDLFGGLFNRGGG 136
|
Length = 392 |
| >gnl|CDD|236941 PRK11634, PRK11634, ATP-dependent RNA helicase DeaD; Provisional | Back alignment and domain information |
|---|
Score = 41.0 bits (96), Expect = 6e-04
Identities = 23/45 (51%), Positives = 23/45 (51%), Gaps = 3/45 (6%)
Query: 21 GGRGRGGGRG-GGGGRGGGSAMRG--RGGGRGGGRGGGRGRGGGG 62
GG RGGGRG GG R GG G R GGRG GR R G
Sbjct: 568 GGERRGGGRGFGGERREGGRNFSGERREGGRGDGRRFSGERREGR 612
|
Length = 629 |
| >gnl|CDD|235307 PRK04537, PRK04537, ATP-dependent RNA helicase RhlB; Provisional | Back alignment and domain information |
|---|
Score = 40.7 bits (95), Expect = 7e-04
Identities = 22/73 (30%), Positives = 26/73 (35%)
Query: 14 RGGRGDGGGRGRGGGRGGGGGRGGGSAMRGRGGGRGGGRGGGRGRGGGGMKGGSKVVVEP 73
RGG G G G G GGGGR G+ G+ R R G V
Sbjct: 432 RGGGRSGPGGGSRSGSVGGGGRRDGAGADGKPRPRRKPRVEGEADAAAAGAETPVVAAAA 491
Query: 74 HRHEGVFIAKGKE 86
+ GV A G+
Sbjct: 492 AQAPGVVAADGER 504
|
Length = 572 |
| >gnl|CDD|224429 COG1512, COG1512, Beta-propeller domains of methanol dehydrogenase type [General function prediction only] | Back alignment and domain information |
|---|
Score = 40.0 bits (94), Expect = 8e-04
Identities = 24/61 (39%), Positives = 24/61 (39%), Gaps = 7/61 (11%)
Query: 5 RGRGGGGGFRGGRGDGGGRGRGGGRGGGGGRGGGSAMRGRGGGRGGGRGGGRGRGGGGMK 64
G R G G R R G GG GG GG G GG GGG GGGG
Sbjct: 216 SLYLGRQPDRWLNGVLGRRRRSSGSGGSGGSGG-------GSSGGGFSGGGGSSGGGGAS 268
Query: 65 G 65
G
Sbjct: 269 G 269
|
Length = 271 |
| >gnl|CDD|224429 COG1512, COG1512, Beta-propeller domains of methanol dehydrogenase type [General function prediction only] | Back alignment and domain information |
|---|
Score = 39.6 bits (93), Expect = 9e-04
Identities = 18/56 (32%), Positives = 19/56 (33%), Gaps = 4/56 (7%)
Query: 1 MRPPRGRGGGGGFRGGRGDGGGRGRGGGRGGGGGRGGGSAMRGRGGGRGGGRGGGR 56
+ R G R G GG GG GG G G GG GGG G
Sbjct: 219 LGRQPDRWLNGVLGRRRRSSGS----GGSGGSGGGSSGGGFSGGGGSSGGGGASGS 270
|
Length = 271 |
| >gnl|CDD|232976 TIGR00438, rrmJ, cell division protein FtsJ | Back alignment and domain information |
|---|
Score = 38.6 bits (90), Expect = 0.002
Identities = 45/126 (35%), Positives = 52/126 (41%), Gaps = 27/126 (21%)
Query: 141 IKPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKRTNVIPIIED 200
IKPG VL LGAA G + VG G V AV DL M K NV I D
Sbjct: 30 IKPGDTVLDLGAAPGGWSQVAVEQVGGKGRVIAV--------DLQPM-KPIENVDFIRGD 80
Query: 201 ARHPA---KYRMLVG--MVDVIFSDVAQP-------DQARI-----LALNASY-FLKAGG 242
K R VG VDV+ SD A D R LAL+ + LK G
Sbjct: 81 FTDEEVLNKIRERVGDDKVDVVMSDAAPNISGYWDIDHLRSIDLVELALDIAKEVLKPKG 140
Query: 243 HFVISI 248
+FV+ +
Sbjct: 141 NFVVKV 146
|
Methylates the 23S rRNA. Previously known as cell division protein ftsJ.// Trusted cutoff too high? [SS 10/1/04] [Protein synthesis, tRNA and rRNA base modification]. Length = 188 |
| >gnl|CDD|234526 TIGR04260, Cyano_gly_rpt, rSAM-associated Gly-rich repeat protein | Back alignment and domain information |
|---|
Score = 37.4 bits (87), Expect = 0.002
Identities = 21/53 (39%), Positives = 22/53 (41%)
Query: 14 RGGRGDGGGRGRGGGRGGGGGRGGGSAMRGRGGGRGGGRGGGRGRGGGGMKGG 66
DG RG G GGG G G G + G G GG GG GGG G
Sbjct: 60 ELAGADGNLIARGWGNGGGRGWGNGGSGGGWVNGGGGWGNGGWVNGGGWRNGY 112
|
Members of this protein family average 125 in length, roughly half of which is the repetitive and extremely Gly-rich C-terminal region. Virtually all members occur in the Cyanobacteria, in a neighborhood that includes a radical SAM/SPASM domain, often a marker of peptide modification systems. Length = 119 |
| >gnl|CDD|225317 COG2519, GCD14, tRNA(1-methyladenosine) methyltransferase and related methyltransferases [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Score = 38.8 bits (91), Expect = 0.002
Identities = 31/109 (28%), Positives = 44/109 (40%), Gaps = 10/109 (9%)
Query: 141 IKPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRS---GRDLVNMAKKRTNVIPI 197
I PG+RVL G SG ++++ VGP G V E R+ ++ V
Sbjct: 92 ISPGSRVLEAGTGSGALTAYLARAVGPEGHVTTYEIREDFAKTARENLSEFGLGDRVTLK 151
Query: 198 IEDARHPAKYRMLVGMVDVIFSDVAQPDQARILALNASYFLKAGGHFVI 246
+ D R VD +F D+ P L + S LK GG V+
Sbjct: 152 LGDVREGI----DEEDVDAVFLDLPDPWNV--LE-HVSDALKPGGVVVV 193
|
Length = 256 |
| >gnl|CDD|237171 PRK12678, PRK12678, transcription termination factor Rho; Provisional | Back alignment and domain information |
|---|
Score = 39.1 bits (92), Expect = 0.002
Identities = 20/55 (36%), Positives = 20/55 (36%)
Query: 2 RPPRGRGGGGGFRGGRGDGGGRGRGGGRGGGGGRGGGSAMRGRGGGRGGGRGGGR 56
R R R D G R G G GG RG R R G RGG G R
Sbjct: 229 RRRRRDRRDARGDDNREDRGDRDGDDGEGRGGRRGRRFRDRDRRGRRGGDGGNER 283
|
Length = 672 |
| >gnl|CDD|237171 PRK12678, PRK12678, transcription termination factor Rho; Provisional | Back alignment and domain information |
|---|
Score = 39.1 bits (92), Expect = 0.002
Identities = 18/60 (30%), Positives = 18/60 (30%)
Query: 2 RPPRGRGGGGGFRGGRGDGGGRGRGGGRGGGGGRGGGSAMRGRGGGRGGGRGGGRGRGGG 61
R R G GR DGG R R G RG G G GR G
Sbjct: 205 RRDRREQGDRREERGRRDGGDRRGRRRRRDRRDARGDDNREDRGDRDGDDGEGRGGRRGR 264
|
Length = 672 |
| >gnl|CDD|216666 pfam01728, FtsJ, FtsJ-like methyltransferase | Back alignment and domain information |
|---|
Score = 38.0 bits (89), Expect = 0.002
Identities = 36/131 (27%), Positives = 47/131 (35%), Gaps = 33/131 (25%)
Query: 138 NIWIKPGARVLYLGAASGTTVSHVSDIV---GPNGVVYAVEFSHRSGRDLVNMAKKRTNV 194
+ G VL LGAA G S ++ G G V AV DL M + V
Sbjct: 17 GLKPGKGKTVLDLGAAPGG----FSQVLLERGGAGKVVAV--------DLGPMEPIQ-GV 63
Query: 195 IPIIEDARHPAKYRMLV----GMVDVIFSDVA-------QPDQARILALN------ASYF 237
+ D P L G VD++ SD A D L L A
Sbjct: 64 YFLRGDITDPETLEKLRELLPGKVDLVLSDGAPNVSGIENTDSFISLQLVLAALLLALEV 123
Query: 238 LKAGGHFVISI 248
L+ GG+FV+ +
Sbjct: 124 LRPGGNFVVKV 134
|
This family consists of FtsJ from various bacterial and archaeal sources FtsJ is a methyltransferase, but actually has no effect on cell division. FtsJ's substrate is the 23S rRNA. The 1.5 A crystal structure of FtsJ in complex with its cofactor S-adenosylmethionine revealed that FtsJ has a methyltransferase fold. This family also includes the N terminus of flaviviral NS5 protein. It has been hypothesised that the N-terminal domain of NS5 is a methyltransferase involved in viral RNA capping. Length = 177 |
| >gnl|CDD|221784 pfam12810, Gly_rich, Glycine rich protein | Back alignment and domain information |
|---|
Score = 38.0 bits (89), Expect = 0.003
Identities = 30/70 (42%), Positives = 31/70 (44%), Gaps = 11/70 (15%)
Query: 8 GGGGGFRGGRGDGGGR----------GRGGGRGGGGGRGGGSAMRGRGGGRGGGRGGGRG 57
G GGG GG G G G G GG GG G G + GGG GG GGG G
Sbjct: 126 GFGGGLVGGGGTSNGNNSTGGTQTSGGEGASSGGNGGFGYGGS-GNGGGGGGGYFGGGGG 184
Query: 58 RGGGGMKGGS 67
GG GGS
Sbjct: 185 HYAGGGGGGS 194
|
This family of proteins is greatly expanded in Trichomonas vaginalis. The proteins are composed of several glycine rich motifs interspersed through the sequence. Although many proteins have been annotated by similarity in the family these annotations given the biased composition of the sequences these are unlikely to be functionally relevant. Length = 248 |
| >gnl|CDD|222374 pfam13779, DUF4175, Domain of unknown function (DUF4175) | Back alignment and domain information |
|---|
Score = 38.7 bits (91), Expect = 0.003
Identities = 20/68 (29%), Positives = 27/68 (39%), Gaps = 8/68 (11%)
Query: 7 RGGGGGFRGGRGDGGGRGRGGGRGGGGGRGGGSAMRGRGGGRGGGRGGGR--------GR 58
G +G +G GG G+ G G+G +G+GG G G R GR
Sbjct: 616 NAQRGEQQGQQGQGGQGQGQPGQQGQQGQGQQQGQQGQGGQGGQGSLAERQQALRDELGR 675
Query: 59 GGGGMKGG 66
GG+ G
Sbjct: 676 QRGGLPGM 683
|
Length = 820 |
| >gnl|CDD|237171 PRK12678, PRK12678, transcription termination factor Rho; Provisional | Back alignment and domain information |
|---|
Score = 38.3 bits (90), Expect = 0.004
Identities = 19/59 (32%), Positives = 19/59 (32%), Gaps = 1/59 (1%)
Query: 5 RGRGGGGGFRGGRGDGGGRGRGGGRGGGGGRGG-GSAMRGRGGGRGGGRGGGRGRGGGG 62
R G G R R RG G G G GR G R R RGG G
Sbjct: 221 RDGGDRRGRRRRRDRRDARGDDNREDRGDRDGDDGEGRGGRRGRRFRDRDRRGRRGGDG 279
|
Length = 672 |
| >gnl|CDD|197548 smart00157, PRP, Major prion protein | Back alignment and domain information |
|---|
Score = 37.5 bits (87), Expect = 0.004
Identities = 26/69 (37%), Positives = 31/69 (44%), Gaps = 3/69 (4%)
Query: 2 RPPRGRGGGGGFRGGRGDGGGRGRGGGRGGGGGRGGGSAMRGRGGGRGGGRGGGRGR--- 58
+P G GG G+G GG GG G GG + GGG G GGG G+
Sbjct: 5 KPGGGWNTGGSRYPGQGSPGGNRYPPQGGGWGQPHGGGWGQPHGGGWGQPHGGGWGQPHG 64
Query: 59 GGGGMKGGS 67
GG G GG+
Sbjct: 65 GGWGQGGGT 73
|
The prion protein is a major component of scrapie-associated fibrils in Creutzfeldt-Jakob disease, kuru, Gerstmann-Straussler syndrome and bovine spongiform encephalopathy. Length = 218 |
| >gnl|CDD|219420 pfam07466, DUF1517, Protein of unknown function (DUF1517) | Back alignment and domain information |
|---|
Score = 37.7 bits (88), Expect = 0.004
Identities = 21/52 (40%), Positives = 21/52 (40%), Gaps = 2/52 (3%)
Query: 6 GRGGGGGFRG-GRGDGGGRGRGGGRGGG-GGRGGGSAMRGRGGGRGGGRGGG 55
GR GGG FR R R G GG G GGG G G GGG
Sbjct: 6 GRIGGGSFRAPSRSSSSPRSSSPGGGGYYGSPGGGFGFPFLIPFFGFGGGGG 57
|
This family consists of several hypothetical glycine rich plant and bacterial proteins of around 300 residues in length. The function of this family is unknown. Length = 280 |
Conserved Domains Detected by HHsearch 
Original result of HHsearch against CDD database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Probability ![]() |
| Query | 305 | |||
| KOG1596 | 317 | consensus Fibrillarin and related nucleolar RNA-bi | 100.0 | |
| PTZ00146 | 293 | fibrillarin; Provisional | 100.0 | |
| PF01269 | 229 | Fibrillarin: Fibrillarin; InterPro: IPR000692 Fibr | 100.0 | |
| COG1889 | 231 | NOP1 Fibrillarin-like rRNA methylase [Translation, | 100.0 | |
| PRK04266 | 226 | fibrillarin; Provisional | 100.0 | |
| COG0144 | 355 | Sun tRNA and rRNA cytosine-C5-methylases [Translat | 99.87 | |
| PRK14901 | 434 | 16S rRNA methyltransferase B; Provisional | 99.85 | |
| PRK14903 | 431 | 16S rRNA methyltransferase B; Provisional | 99.84 | |
| PRK11933 | 470 | yebU rRNA (cytosine-C(5)-)-methyltransferase RsmF; | 99.84 | |
| TIGR00446 | 264 | nop2p NOL1/NOP2/sun family putative RNA methylase. | 99.84 | |
| PRK14902 | 444 | 16S rRNA methyltransferase B; Provisional | 99.81 | |
| PRK14904 | 445 | 16S rRNA methyltransferase B; Provisional | 99.8 | |
| TIGR00563 | 426 | rsmB ribosomal RNA small subunit methyltransferase | 99.79 | |
| PRK10901 | 427 | 16S rRNA methyltransferase B; Provisional | 99.78 | |
| PF01189 | 283 | Nol1_Nop2_Fmu: NOL1/NOP2/sun family; InterPro: IPR | 99.77 | |
| KOG1122 | 460 | consensus tRNA and rRNA cytosine-C5-methylase (nuc | 99.73 | |
| TIGR02752 | 231 | MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone me | 99.64 | |
| COG2226 | 238 | UbiE Methylase involved in ubiquinone/menaquinone | 99.64 | |
| PF01209 | 233 | Ubie_methyltran: ubiE/COQ5 methyltransferase famil | 99.62 | |
| PLN02233 | 261 | ubiquinone biosynthesis methyltransferase | 99.6 | |
| PF12847 | 112 | Methyltransf_18: Methyltransferase domain; PDB: 3G | 99.58 | |
| COG4123 | 248 | Predicted O-methyltransferase [General function pr | 99.58 | |
| PRK00107 | 187 | gidB 16S rRNA methyltransferase GidB; Reviewed | 99.56 | |
| PTZ00098 | 263 | phosphoethanolamine N-methyltransferase; Provision | 99.56 | |
| PF08704 | 247 | GCD14: tRNA methyltransferase complex GCD14 subuni | 99.56 | |
| PLN02244 | 340 | tocopherol O-methyltransferase | 99.55 | |
| TIGR00138 | 181 | gidB 16S rRNA methyltransferase GidB. GidB (glucos | 99.55 | |
| PF05175 | 170 | MTS: Methyltransferase small domain; InterPro: IPR | 99.54 | |
| KOG2198 | 375 | consensus tRNA cytosine-5-methylases and related e | 99.54 | |
| PRK00377 | 198 | cbiT cobalt-precorrin-6Y C(15)-methyltransferase; | 99.54 | |
| PF13847 | 152 | Methyltransf_31: Methyltransferase domain; PDB: 3T | 99.54 | |
| PRK00121 | 202 | trmB tRNA (guanine-N(7)-)-methyltransferase; Revie | 99.53 | |
| PRK08287 | 187 | cobalt-precorrin-6Y C(15)-methyltransferase; Valid | 99.52 | |
| PRK14103 | 255 | trans-aconitate 2-methyltransferase; Provisional | 99.52 | |
| COG2230 | 283 | Cfa Cyclopropane fatty acid synthase and related m | 99.51 | |
| PLN02490 | 340 | MPBQ/MSBQ methyltransferase | 99.5 | |
| PRK11188 | 209 | rrmJ 23S rRNA methyltransferase J; Provisional | 99.5 | |
| TIGR02469 | 124 | CbiT precorrin-6Y C5,15-methyltransferase (decarbo | 99.5 | |
| COG2242 | 187 | CobL Precorrin-6B methylase 2 [Coenzyme metabolism | 99.5 | |
| TIGR03704 | 251 | PrmC_rel_meth putative protein-(glutamine-N5) meth | 99.49 | |
| PRK11873 | 272 | arsM arsenite S-adenosylmethyltransferase; Reviewe | 99.49 | |
| PRK01683 | 258 | trans-aconitate 2-methyltransferase; Provisional | 99.48 | |
| COG2519 | 256 | GCD14 tRNA(1-methyladenosine) methyltransferase an | 99.48 | |
| PF02353 | 273 | CMAS: Mycolic acid cyclopropane synthetase; InterP | 99.48 | |
| TIGR00091 | 194 | tRNA (guanine-N(7)-)-methyltransferase. In E. coli | 99.47 | |
| PF05401 | 201 | NodS: Nodulation protein S (NodS); InterPro: IPR00 | 99.47 | |
| PRK13168 | 443 | rumA 23S rRNA m(5)U1939 methyltransferase; Reviewe | 99.47 | |
| TIGR00080 | 215 | pimt protein-L-isoaspartate(D-aspartate) O-methylt | 99.46 | |
| PRK14966 | 423 | unknown domain/N5-glutamine S-adenosyl-L-methionin | 99.44 | |
| PRK13942 | 212 | protein-L-isoaspartate O-methyltransferase; Provis | 99.44 | |
| PF08241 | 95 | Methyltransf_11: Methyltransferase domain; InterPr | 99.43 | |
| TIGR00537 | 179 | hemK_rel_arch HemK-related putative methylase. The | 99.43 | |
| PLN02336 | 475 | phosphoethanolamine N-methyltransferase | 99.43 | |
| PRK08317 | 241 | hypothetical protein; Provisional | 99.42 | |
| PRK11207 | 197 | tellurite resistance protein TehB; Provisional | 99.42 | |
| PRK10258 | 251 | biotin biosynthesis protein BioC; Provisional | 99.42 | |
| PRK13944 | 205 | protein-L-isoaspartate O-methyltransferase; Provis | 99.42 | |
| PF13659 | 117 | Methyltransf_26: Methyltransferase domain; PDB: 3G | 99.41 | |
| PRK14967 | 223 | putative methyltransferase; Provisional | 99.41 | |
| TIGR00438 | 188 | rrmJ cell division protein FtsJ. | 99.41 | |
| PRK11036 | 255 | putative S-adenosyl-L-methionine-dependent methylt | 99.41 | |
| COG4106 | 257 | Tam Trans-aconitate methyltransferase [General fun | 99.41 | |
| PRK15001 | 378 | SAM-dependent 23S ribosomal RNA mG1835 methyltrans | 99.41 | |
| PF01135 | 209 | PCMT: Protein-L-isoaspartate(D-aspartate) O-methyl | 99.4 | |
| TIGR03534 | 251 | RF_mod_PrmC protein-(glutamine-N5) methyltransfera | 99.4 | |
| PF03848 | 192 | TehB: Tellurite resistance protein TehB; InterPro: | 99.4 | |
| PRK15068 | 322 | tRNA mo(5)U34 methyltransferase; Provisional | 99.4 | |
| PRK09328 | 275 | N5-glutamine S-adenosyl-L-methionine-dependent met | 99.39 | |
| PRK00517 | 250 | prmA ribosomal protein L11 methyltransferase; Revi | 99.39 | |
| PLN02396 | 322 | hexaprenyldihydroxybenzoate methyltransferase | 99.39 | |
| PRK15451 | 247 | tRNA cmo(5)U34 methyltransferase; Provisional | 99.39 | |
| TIGR00452 | 314 | methyltransferase, putative. Known examples to dat | 99.39 | |
| PRK07402 | 196 | precorrin-6B methylase; Provisional | 99.38 | |
| TIGR00740 | 239 | methyltransferase, putative. A simple BLAST search | 99.37 | |
| TIGR02072 | 240 | BioC biotin biosynthesis protein BioC. This enzyme | 99.36 | |
| TIGR03533 | 284 | L3_gln_methyl protein-(glutamine-N5) methyltransfe | 99.36 | |
| KOG1540 | 296 | consensus Ubiquinone biosynthesis methyltransferas | 99.35 | |
| PRK14968 | 188 | putative methyltransferase; Provisional | 99.35 | |
| COG2518 | 209 | Pcm Protein-L-isoaspartate carboxylmethyltransfera | 99.35 | |
| TIGR00406 | 288 | prmA ribosomal protein L11 methyltransferase. Ribo | 99.35 | |
| PRK00216 | 239 | ubiE ubiquinone/menaquinone biosynthesis methyltra | 99.35 | |
| TIGR00536 | 284 | hemK_fam HemK family putative methylases. The gene | 99.34 | |
| COG2264 | 300 | PrmA Ribosomal protein L11 methylase [Translation, | 99.34 | |
| smart00828 | 224 | PKS_MT Methyltransferase in polyketide synthase (P | 99.34 | |
| TIGR00479 | 431 | rumA 23S rRNA (uracil-5-)-methyltransferase RumA. | 99.34 | |
| TIGR00477 | 195 | tehB tellurite resistance protein TehB. Part of a | 99.34 | |
| PF13649 | 101 | Methyltransf_25: Methyltransferase domain; PDB: 3B | 99.34 | |
| PRK14121 | 390 | tRNA (guanine-N(7)-)-methyltransferase; Provisiona | 99.33 | |
| PF13489 | 161 | Methyltransf_23: Methyltransferase domain; PDB: 3J | 99.33 | |
| TIGR01177 | 329 | conserved hypothetical protein TIGR01177. This fam | 99.33 | |
| COG2813 | 300 | RsmC 16S RNA G1207 methylase RsmC [Translation, ri | 99.33 | |
| COG2890 | 280 | HemK Methylase of polypeptide chain release factor | 99.33 | |
| PF06325 | 295 | PrmA: Ribosomal protein L11 methyltransferase (Prm | 99.33 | |
| PRK15128 | 396 | 23S rRNA m(5)C1962 methyltransferase; Provisional | 99.32 | |
| PRK03522 | 315 | rumB 23S rRNA methyluridine methyltransferase; Rev | 99.32 | |
| TIGR01934 | 223 | MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis | 99.32 | |
| PRK09489 | 342 | rsmC 16S ribosomal RNA m2G1207 methyltransferase; | 99.31 | |
| COG0293 | 205 | FtsJ 23S rRNA methylase [Translation, ribosomal st | 99.31 | |
| TIGR03840 | 213 | TMPT_Se_Te thiopurine S-methyltransferase, Se/Te d | 99.3 | |
| PRK11088 | 272 | rrmA 23S rRNA methyltransferase A; Provisional | 99.3 | |
| COG2227 | 243 | UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4- | 99.3 | |
| PRK11705 | 383 | cyclopropane fatty acyl phospholipid synthase; Pro | 99.3 | |
| PRK12335 | 287 | tellurite resistance protein TehB; Provisional | 99.29 | |
| PRK04457 | 262 | spermidine synthase; Provisional | 99.29 | |
| PRK01544 | 506 | bifunctional N5-glutamine S-adenosyl-L-methionine- | 99.29 | |
| PRK11805 | 307 | N5-glutamine S-adenosyl-L-methionine-dependent met | 99.27 | |
| TIGR02085 | 374 | meth_trns_rumB 23S rRNA (uracil-5-)-methyltransfer | 99.26 | |
| KOG2360 | 413 | consensus Proliferation-associated nucleolar prote | 99.26 | |
| PRK13255 | 218 | thiopurine S-methyltransferase; Reviewed | 99.26 | |
| COG2265 | 432 | TrmA SAM-dependent methyltransferases related to t | 99.26 | |
| PLN02336 | 475 | phosphoethanolamine N-methyltransferase | 99.26 | |
| PRK00312 | 212 | pcm protein-L-isoaspartate O-methyltransferase; Re | 99.25 | |
| PRK13943 | 322 | protein-L-isoaspartate O-methyltransferase; Provis | 99.24 | |
| KOG2915 | 314 | consensus tRNA(1-methyladenosine) methyltransferas | 99.24 | |
| PLN03075 | 296 | nicotianamine synthase; Provisional | 99.24 | |
| COG1092 | 393 | Predicted SAM-dependent methyltransferases [Genera | 99.23 | |
| PRK01581 | 374 | speE spermidine synthase; Validated | 99.23 | |
| PF02390 | 195 | Methyltransf_4: Putative methyltransferase ; Inter | 99.22 | |
| TIGR02716 | 306 | C20_methyl_CrtF C-20 methyltransferase BchU. Membe | 99.21 | |
| KOG1271 | 227 | consensus Methyltransferases [General function pre | 99.2 | |
| PLN02781 | 234 | Probable caffeoyl-CoA O-methyltransferase | 99.2 | |
| PRK03612 | 521 | spermidine synthase; Provisional | 99.2 | |
| PRK11783 | 702 | rlmL 23S rRNA m(2)G2445 methyltransferase; Provisi | 99.2 | |
| KOG4589 | 232 | consensus Cell division protein FtsJ [Cell cycle c | 99.2 | |
| COG2521 | 287 | Predicted archaeal methyltransferase [General func | 99.19 | |
| PF10672 | 286 | Methyltrans_SAM: S-adenosylmethionine-dependent me | 99.19 | |
| PRK06922 | 677 | hypothetical protein; Provisional | 99.18 | |
| PF08242 | 99 | Methyltransf_12: Methyltransferase domain; InterPr | 99.18 | |
| PRK00811 | 283 | spermidine synthase; Provisional | 99.17 | |
| smart00138 | 264 | MeTrc Methyltransferase, chemotaxis proteins. Meth | 99.16 | |
| KOG1270 | 282 | consensus Methyltransferases [Coenzyme transport a | 99.15 | |
| PRK05031 | 362 | tRNA (uracil-5-)-methyltransferase; Validated | 99.15 | |
| PRK10909 | 199 | rsmD 16S rRNA m(2)G966-methyltransferase; Provisio | 99.15 | |
| PRK05134 | 233 | bifunctional 3-demethylubiquinone-9 3-methyltransf | 99.14 | |
| TIGR03587 | 204 | Pse_Me-ase pseudaminic acid biosynthesis-associate | 99.14 | |
| PF01596 | 205 | Methyltransf_3: O-methyltransferase; InterPro: IPR | 99.14 | |
| PHA03411 | 279 | putative methyltransferase; Provisional | 99.14 | |
| TIGR02021 | 219 | BchM-ChlM magnesium protoporphyrin O-methyltransfe | 99.13 | |
| PRK05785 | 226 | hypothetical protein; Provisional | 99.13 | |
| COG2520 | 341 | Predicted methyltransferase [General function pred | 99.12 | |
| TIGR03438 | 301 | probable methyltransferase. This model represents | 99.11 | |
| KOG4300 | 252 | consensus Predicted methyltransferase [General fun | 99.11 | |
| PLN02476 | 278 | O-methyltransferase | 99.1 | |
| PF05724 | 218 | TPMT: Thiopurine S-methyltransferase (TPMT); Inter | 99.09 | |
| PLN02366 | 308 | spermidine synthase | 99.09 | |
| COG4122 | 219 | Predicted O-methyltransferase [General function pr | 99.09 | |
| PRK13256 | 226 | thiopurine S-methyltransferase; Reviewed | 99.09 | |
| PF05958 | 352 | tRNA_U5-meth_tr: tRNA (Uracil-5-)-methyltransferas | 99.09 | |
| KOG2904 | 328 | consensus Predicted methyltransferase [General fun | 99.09 | |
| PF01728 | 181 | FtsJ: FtsJ-like methyltransferase; InterPro: IPR00 | 99.08 | |
| TIGR02143 | 353 | trmA_only tRNA (uracil-5-)-methyltransferase. This | 99.07 | |
| COG0220 | 227 | Predicted S-adenosylmethionine-dependent methyltra | 99.06 | |
| TIGR01983 | 224 | UbiG ubiquinone biosynthesis O-methyltransferase. | 99.06 | |
| smart00650 | 169 | rADc Ribosomal RNA adenine dimethylases. | 99.05 | |
| PHA03412 | 241 | putative methyltransferase; Provisional | 99.05 | |
| PF07021 | 193 | MetW: Methionine biosynthesis protein MetW; InterP | 99.05 | |
| TIGR00417 | 270 | speE spermidine synthase. the SpeE subunit of sper | 99.04 | |
| KOG2361 | 264 | consensus Predicted methyltransferase [General fun | 99.03 | |
| PRK06202 | 232 | hypothetical protein; Provisional | 99.02 | |
| PLN02672 | 1082 | methionine S-methyltransferase | 99.02 | |
| PRK07580 | 230 | Mg-protoporphyrin IX methyl transferase; Validated | 99.01 | |
| cd02440 | 107 | AdoMet_MTases S-adenosylmethionine-dependent methy | 99.01 | |
| PF08003 | 315 | Methyltransf_9: Protein of unknown function (DUF16 | 99.0 | |
| PF02475 | 200 | Met_10: Met-10+ like-protein; InterPro: IPR003402 | 98.99 | |
| TIGR00478 | 228 | tly hemolysin TlyA family protein. Hemolysins are | 98.98 | |
| TIGR02081 | 194 | metW methionine biosynthesis protein MetW. This pr | 98.98 | |
| TIGR00095 | 189 | RNA methyltransferase, RsmD family. This model rep | 98.97 | |
| PF03602 | 183 | Cons_hypoth95: Conserved hypothetical protein 95; | 98.97 | |
| COG1041 | 347 | Predicted DNA modification methylase [DNA replicat | 98.97 | |
| COG2263 | 198 | Predicted RNA methylase [Translation, ribosomal st | 98.94 | |
| KOG3191 | 209 | consensus Predicted N6-DNA-methyltransferase [Tran | 98.92 | |
| COG0742 | 187 | N6-adenine-specific methylase [DNA replication, re | 98.92 | |
| PLN02589 | 247 | caffeoyl-CoA O-methyltransferase | 98.91 | |
| PLN02823 | 336 | spermine synthase | 98.9 | |
| PF01170 | 179 | UPF0020: Putative RNA methylase family UPF0020; In | 98.89 | |
| COG3963 | 194 | Phospholipid N-methyltransferase [Lipid metabolism | 98.89 | |
| PF03291 | 331 | Pox_MCEL: mRNA capping enzyme; InterPro: IPR004971 | 98.87 | |
| PLN02585 | 315 | magnesium protoporphyrin IX methyltransferase | 98.86 | |
| PRK01544 | 506 | bifunctional N5-glutamine S-adenosyl-L-methionine- | 98.83 | |
| KOG1661 | 237 | consensus Protein-L-isoaspartate(D-aspartate) O-me | 98.83 | |
| COG4976 | 287 | Predicted methyltransferase (contains TPR repeat) | 98.83 | |
| KOG1975 | 389 | consensus mRNA cap methyltransferase [RNA processi | 98.82 | |
| PRK04338 | 382 | N(2),N(2)-dimethylguanosine tRNA methyltransferase | 98.81 | |
| KOG3010 | 261 | consensus Methyltransferase [General function pred | 98.81 | |
| PF05148 | 219 | Methyltransf_8: Hypothetical methyltransferase; In | 98.81 | |
| PF06080 | 204 | DUF938: Protein of unknown function (DUF938); Inte | 98.81 | |
| COG1189 | 245 | Predicted rRNA methylase [Translation, ribosomal s | 98.79 | |
| PRK00050 | 296 | 16S rRNA m(4)C1402 methyltranserfase; Provisional | 98.79 | |
| PF05219 | 265 | DREV: DREV methyltransferase; InterPro: IPR007884 | 98.78 | |
| COG4262 | 508 | Predicted spermidine synthase with an N-terminal m | 98.76 | |
| PF05185 | 448 | PRMT5: PRMT5 arginine-N-methyltransferase; InterPr | 98.72 | |
| PRK14896 | 258 | ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 | 98.71 | |
| PRK00274 | 272 | ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 | 98.69 | |
| PF02384 | 311 | N6_Mtase: N-6 DNA Methylase; InterPro: IPR003356 T | 98.68 | |
| KOG1541 | 270 | consensus Predicted protein carboxyl methylase [Ge | 98.66 | |
| KOG2187 | 534 | consensus tRNA uracil-5-methyltransferase and rela | 98.65 | |
| TIGR00755 | 253 | ksgA dimethyladenosine transferase. Alternate name | 98.65 | |
| PF10294 | 173 | Methyltransf_16: Putative methyltransferase; Inter | 98.62 | |
| PRK11727 | 321 | 23S rRNA mA1618 methyltransferase; Provisional | 98.6 | |
| KOG1500 | 517 | consensus Protein arginine N-methyltransferase CAR | 98.6 | |
| PF09445 | 163 | Methyltransf_15: RNA cap guanine-N2 methyltransfer | 98.6 | |
| TIGR00308 | 374 | TRM1 tRNA(guanine-26,N2-N2) methyltransferase. Thi | 98.59 | |
| PTZ00338 | 294 | dimethyladenosine transferase-like protein; Provis | 98.59 | |
| KOG1663 | 237 | consensus O-methyltransferase [Secondary metabolit | 98.58 | |
| PF01234 | 256 | NNMT_PNMT_TEMT: NNMT/PNMT/TEMT family; InterPro: I | 98.56 | |
| PRK11760 | 357 | putative 23S rRNA C2498 ribose 2'-O-ribose methylt | 98.55 | |
| KOG2899 | 288 | consensus Predicted methyltransferase [General fun | 98.54 | |
| KOG3045 | 325 | consensus Predicted RNA methylase involved in rRNA | 98.53 | |
| PF01564 | 246 | Spermine_synth: Spermine/spermidine synthase; Inte | 98.53 | |
| PF00891 | 241 | Methyltransf_2: O-methyltransferase; InterPro: IPR | 98.52 | |
| COG0116 | 381 | Predicted N6-adenine-specific DNA methylase [DNA r | 98.49 | |
| KOG3420 | 185 | consensus Predicted RNA methylase [Translation, ri | 98.49 | |
| PF02527 | 184 | GidB: rRNA small subunit methyltransferase G; Inte | 98.49 | |
| PF12147 | 311 | Methyltransf_20: Putative methyltransferase; Inter | 98.46 | |
| COG0421 | 282 | SpeE Spermidine synthase [Amino acid transport and | 98.45 | |
| PF11968 | 219 | DUF3321: Putative methyltransferase (DUF3321); Int | 98.42 | |
| COG4798 | 238 | Predicted methyltransferase [General function pred | 98.4 | |
| COG0030 | 259 | KsgA Dimethyladenosine transferase (rRNA methylati | 98.39 | |
| PF01739 | 196 | CheR: CheR methyltransferase, SAM binding domain; | 98.39 | |
| PRK11783 | 702 | rlmL 23S rRNA m(2)G2445 methyltransferase; Provisi | 98.38 | |
| COG0357 | 215 | GidB Predicted S-adenosylmethionine-dependent meth | 98.38 | |
| KOG1099 | 294 | consensus SAM-dependent methyltransferase/cell div | 98.38 | |
| KOG1499 | 346 | consensus Protein arginine N-methyltransferase PRM | 98.34 | |
| TIGR03439 | 319 | methyl_EasF probable methyltransferase domain, Eas | 98.32 | |
| PRK04148 | 134 | hypothetical protein; Provisional | 98.32 | |
| PRK00536 | 262 | speE spermidine synthase; Provisional | 98.3 | |
| PF00398 | 262 | RrnaAD: Ribosomal RNA adenine dimethylase; InterPr | 98.29 | |
| PLN02232 | 160 | ubiquinone biosynthesis methyltransferase | 98.28 | |
| PF08123 | 205 | DOT1: Histone methylation protein DOT1 ; InterPro: | 98.28 | |
| COG4076 | 252 | Predicted RNA methylase [General function predicti | 98.27 | |
| PF05891 | 218 | Methyltransf_PK: AdoMet dependent proline di-methy | 98.26 | |
| COG1352 | 268 | CheR Methylase of chemotaxis methyl-accepting prot | 98.25 | |
| PF13578 | 106 | Methyltransf_24: Methyltransferase domain; PDB: 3S | 98.23 | |
| TIGR02987 | 524 | met_A_Alw26 type II restriction m6 adenine DNA met | 98.2 | |
| KOG1098 | 780 | consensus Putative SAM-dependent rRNA methyltransf | 98.14 | |
| PF01861 | 243 | DUF43: Protein of unknown function DUF43; InterPro | 98.09 | |
| cd00315 | 275 | Cyt_C5_DNA_methylase Cytosine-C5 specific DNA meth | 98.07 | |
| KOG0820 | 315 | consensus Ribosomal RNA adenine dimethylase [RNA p | 98.05 | |
| TIGR00006 | 305 | S-adenosyl-methyltransferase MraW. Genetics paper | 98.03 | |
| PRK10611 | 287 | chemotaxis methyltransferase CheR; Provisional | 98.0 | |
| PF04816 | 205 | DUF633: Family of unknown function (DUF633) ; Inte | 97.99 | |
| PF03059 | 276 | NAS: Nicotianamine synthase protein; InterPro: IPR | 97.84 | |
| PRK10742 | 250 | putative methyltransferase; Provisional | 97.81 | |
| PF06962 | 140 | rRNA_methylase: Putative rRNA methylase; InterPro: | 97.79 | |
| PF03141 | 506 | Methyltransf_29: Putative S-adenosyl-L-methionine- | 97.77 | |
| PF07942 | 270 | N2227: N2227-like protein; InterPro: IPR012901 Thi | 97.73 | |
| PF00145 | 335 | DNA_methylase: C-5 cytosine-specific DNA methylase | 97.73 | |
| KOG3987 | 288 | consensus Uncharacterized conserved protein DREV/C | 97.68 | |
| COG0286 | 489 | HsdM Type I restriction-modification system methyl | 97.65 | |
| PF09243 | 274 | Rsm22: Mitochondrial small ribosomal subunit Rsm22 | 97.59 | |
| PF04989 | 206 | CmcI: Cephalosporin hydroxylase; InterPro: IPR0070 | 97.54 | |
| PF01795 | 310 | Methyltransf_5: MraW methylase family; InterPro: I | 97.53 | |
| KOG2940 | 325 | consensus Predicted methyltransferase [General fun | 97.53 | |
| COG0275 | 314 | Predicted S-adenosylmethionine-dependent methyltra | 97.52 | |
| PF13679 | 141 | Methyltransf_32: Methyltransferase domain | 97.52 | |
| KOG2730 | 263 | consensus Methylase [General function prediction o | 97.47 | |
| PF04672 | 267 | Methyltransf_19: S-adenosyl methyltransferase; Int | 97.33 | |
| COG3897 | 218 | Predicted methyltransferase [General function pred | 97.3 | |
| PF11599 | 246 | AviRa: RRNA methyltransferase AviRa; InterPro: IPR | 97.29 | |
| COG0500 | 257 | SmtA SAM-dependent methyltransferases [Secondary m | 97.26 | |
| TIGR00675 | 315 | dcm DNA-methyltransferase (dcm). All proteins in t | 97.25 | |
| TIGR01444 | 143 | fkbM_fam methyltransferase, FkbM family. Members o | 97.25 | |
| KOG2671 | 421 | consensus Putative RNA methylase [Replication, rec | 97.17 | |
| KOG2352 | 482 | consensus Predicted spermine/spermidine synthase [ | 97.15 | |
| PRK10458 | 467 | DNA cytosine methylase; Provisional | 97.08 | |
| COG2384 | 226 | Predicted SAM-dependent methyltransferase [General | 97.06 | |
| KOG3178 | 342 | consensus Hydroxyindole-O-methyltransferase and re | 97.02 | |
| KOG1709 | 271 | consensus Guanidinoacetate methyltransferase and r | 97.02 | |
| COG1064 | 339 | AdhP Zn-dependent alcohol dehydrogenases [General | 97.01 | |
| COG0270 | 328 | Dcm Site-specific DNA methylase [DNA replication, | 96.95 | |
| PTZ00146 | 293 | fibrillarin; Provisional | 96.88 | |
| KOG3115 | 249 | consensus Methyltransferase-like protein [General | 96.86 | |
| KOG0822 | 649 | consensus Protein kinase inhibitor [Cell cycle con | 96.79 | |
| KOG3201 | 201 | consensus Uncharacterized conserved protein [Funct | 96.74 | |
| PF10354 | 166 | DUF2431: Domain of unknown function (DUF2431); Int | 96.7 | |
| PF03141 | 506 | Methyltransf_29: Putative S-adenosyl-L-methionine- | 96.64 | |
| PRK01747 | 662 | mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltrans | 96.57 | |
| KOG1269 | 364 | consensus SAM-dependent methyltransferases [Lipid | 96.52 | |
| PF05971 | 299 | Methyltransf_10: Protein of unknown function (DUF8 | 96.48 | |
| PF04445 | 234 | SAM_MT: Putative SAM-dependent methyltransferase; | 96.46 | |
| PF07091 | 251 | FmrO: Ribosomal RNA methyltransferase (FmrO); PDB: | 96.33 | |
| COG1568 | 354 | Predicted methyltransferases [General function pre | 96.31 | |
| KOG1331 | 293 | consensus Predicted methyltransferase [General fun | 96.25 | |
| PF10237 | 162 | N6-adenineMlase: Probable N6-adenine methyltransfe | 96.19 | |
| COG5459 | 484 | Predicted rRNA methylase [Translation, ribosomal s | 96.07 | |
| KOG1562 | 337 | consensus Spermidine synthase [Amino acid transpor | 96.05 | |
| PRK13699 | 227 | putative methylase; Provisional | 95.92 | |
| PF02005 | 377 | TRM: N2,N2-dimethylguanosine tRNA methyltransferas | 95.89 | |
| KOG1227 | 351 | consensus Putative methyltransferase [General func | 95.58 | |
| PHA01634 | 156 | hypothetical protein | 95.58 | |
| KOG2793 | 248 | consensus Putative N2,N2-dimethylguanosine tRNA me | 95.57 | |
| PF02254 | 116 | TrkA_N: TrkA-N domain; InterPro: IPR003148 The reg | 95.42 | |
| COG2933 | 358 | Predicted SAM-dependent methyltransferase [General | 95.17 | |
| PF05430 | 124 | Methyltransf_30: S-adenosyl-L-methionine-dependent | 95.09 | |
| KOG2078 | 495 | consensus tRNA modification enzyme [RNA processing | 95.09 | |
| KOG1596 | 317 | consensus Fibrillarin and related nucleolar RNA-bi | 95.03 | |
| PF01555 | 231 | N6_N4_Mtase: DNA methylase; InterPro: IPR002941 Th | 94.96 | |
| PRK11524 | 284 | putative methyltransferase; Provisional | 94.73 | |
| cd08283 | 386 | FDH_like_1 Glutathione-dependent formaldehyde dehy | 94.63 | |
| PRK11524 | 284 | putative methyltransferase; Provisional | 94.51 | |
| COG1867 | 380 | TRM1 N2,N2-dimethylguanosine tRNA methyltransferas | 94.28 | |
| KOG2798 | 369 | consensus Putative trehalase [Carbohydrate transpo | 94.15 | |
| PF03492 | 334 | Methyltransf_7: SAM dependent carboxyl methyltrans | 94.05 | |
| PRK09880 | 343 | L-idonate 5-dehydrogenase; Provisional | 93.92 | |
| COG4301 | 321 | Uncharacterized conserved protein [Function unknow | 93.84 | |
| PTZ00357 | 1072 | methyltransferase; Provisional | 93.78 | |
| cd08237 | 341 | ribitol-5-phosphate_DH ribitol-5-phosphate dehydro | 93.75 | |
| PRK13699 | 227 | putative methylase; Provisional | 93.53 | |
| KOG1253 | 525 | consensus tRNA methyltransferase [Translation, rib | 93.49 | |
| COG1748 | 389 | LYS9 Saccharopine dehydrogenase and related protei | 93.21 | |
| PF03269 | 177 | DUF268: Caenorhabditis protein of unknown function | 93.01 | |
| TIGR00497 | 501 | hsdM type I restriction system adenine methylase ( | 92.81 | |
| KOG3924 | 419 | consensus Putative protein methyltransferase invol | 91.57 | |
| KOG2352 | 482 | consensus Predicted spermine/spermidine synthase [ | 91.26 | |
| PF00107 | 130 | ADH_zinc_N: Zinc-binding dehydrogenase; InterPro: | 91.19 | |
| PRK09424 | 509 | pntA NAD(P) transhydrogenase subunit alpha; Provis | 90.79 | |
| PRK05786 | 238 | fabG 3-ketoacyl-(acyl-carrier-protein) reductase; | 90.68 | |
| PF03686 | 127 | UPF0146: Uncharacterised protein family (UPF0146); | 90.51 | |
| PLN02668 | 386 | indole-3-acetate carboxyl methyltransferase | 90.38 | |
| COG3510 | 237 | CmcI Cephalosporin hydroxylase [Defense mechanisms | 90.29 | |
| cd05188 | 271 | MDR Medium chain reductase/dehydrogenase (MDR)/zin | 90.25 | |
| PF02636 | 252 | Methyltransf_28: Putative S-adenosyl-L-methionine- | 90.24 | |
| cd08254 | 338 | hydroxyacyl_CoA_DH 6-hydroxycyclohex-1-ene-1-carbo | 90.01 | |
| PF07279 | 218 | DUF1442: Protein of unknown function (DUF1442); In | 89.93 | |
| KOG2920 | 282 | consensus Predicted methyltransferase [General fun | 89.77 | |
| cd08230 | 355 | glucose_DH Glucose dehydrogenase. Glucose dehydrog | 89.47 | |
| PRK10669 | 558 | putative cation:proton antiport protein; Provision | 89.34 | |
| KOG4058 | 199 | consensus Uncharacterized conserved protein [Funct | 89.18 | |
| KOG1501 | 636 | consensus Arginine N-methyltransferase [General fu | 89.13 | |
| COG3129 | 292 | Predicted SAM-dependent methyltransferase [General | 88.71 | |
| TIGR02822 | 329 | adh_fam_2 zinc-binding alcohol dehydrogenase famil | 88.59 | |
| COG1565 | 370 | Uncharacterized conserved protein [Function unknow | 88.29 | |
| COG1063 | 350 | Tdh Threonine dehydrogenase and related Zn-depende | 88.27 | |
| PRK06940 | 275 | short chain dehydrogenase; Provisional | 87.85 | |
| PRK03659 | 601 | glutathione-regulated potassium-efflux system prot | 87.42 | |
| KOG0024 | 354 | consensus Sorbitol dehydrogenase [Secondary metabo | 87.38 | |
| PRK09496 | 453 | trkA potassium transporter peripheral membrane com | 87.27 | |
| PF05206 | 259 | TRM13: Methyltransferase TRM13; InterPro: IPR00787 | 87.15 | |
| TIGR03451 | 358 | mycoS_dep_FDH mycothiol-dependent formaldehyde deh | 87.14 | |
| cd08281 | 371 | liver_ADH_like1 Zinc-dependent alcohol dehydrogena | 87.11 | |
| COG0604 | 326 | Qor NADPH:quinone reductase and related Zn-depende | 87.03 | |
| PRK03562 | 621 | glutathione-regulated potassium-efflux system prot | 86.87 | |
| PF03446 | 163 | NAD_binding_2: NAD binding domain of 6-phosphogluc | 86.83 | |
| PF03435 | 386 | Saccharop_dh: Saccharopine dehydrogenase ; InterPr | 86.64 | |
| PF06460 | 299 | NSP13: Coronavirus NSP13; InterPro: IPR009461 This | 86.63 | |
| TIGR03366 | 280 | HpnZ_proposed putative phosphonate catabolism asso | 86.62 | |
| KOG2651 | 476 | consensus rRNA adenine N-6-methyltransferase [RNA | 86.62 | |
| PF05063 | 176 | MT-A70: MT-A70 ; InterPro: IPR007757 N6-methyladen | 86.54 | |
| KOG3350 | 217 | consensus Uncharacterized conserved protein [Funct | 86.51 | |
| KOG0023 | 360 | consensus Alcohol dehydrogenase, class V [Secondar | 86.36 | |
| PF12692 | 160 | Methyltransf_17: S-adenosyl-L-methionine methyltra | 86.01 | |
| COG0569 | 225 | TrkA K+ transport systems, NAD-binding component [ | 85.99 | |
| PRK07806 | 248 | short chain dehydrogenase; Provisional | 85.5 | |
| PRK08324 | 681 | short chain dehydrogenase; Validated | 85.37 | |
| PF05711 | 248 | TylF: Macrocin-O-methyltransferase (TylF); InterPr | 85.22 | |
| TIGR03201 | 349 | dearomat_had 6-hydroxycyclohex-1-ene-1-carbonyl-Co | 84.8 | |
| PF07757 | 112 | AdoMet_MTase: Predicted AdoMet-dependent methyltra | 84.63 | |
| PF06859 | 110 | Bin3: Bicoid-interacting protein 3 (Bin3); InterPr | 84.57 | |
| PLN03154 | 348 | putative allyl alcohol dehydrogenase; Provisional | 84.57 | |
| PF01210 | 157 | NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate | 84.5 | |
| PRK07576 | 264 | short chain dehydrogenase; Provisional | 84.29 | |
| COG1255 | 129 | Uncharacterized protein conserved in archaea [Func | 84.23 | |
| PRK05872 | 296 | short chain dehydrogenase; Provisional | 84.23 | |
| PF01555 | 231 | N6_N4_Mtase: DNA methylase; InterPro: IPR002941 Th | 84.14 | |
| PLN02896 | 353 | cinnamyl-alcohol dehydrogenase | 84.03 | |
| cd08232 | 339 | idonate-5-DH L-idonate 5-dehydrogenase. L-idonate | 83.83 | |
| KOG1201 | 300 | consensus Hydroxysteroid 17-beta dehydrogenase 11 | 83.61 | |
| cd08255 | 277 | 2-desacetyl-2-hydroxyethyl_bacteriochlorophyllide_ | 83.55 | |
| PRK06701 | 290 | short chain dehydrogenase; Provisional | 83.54 | |
| PRK07533 | 258 | enoyl-(acyl carrier protein) reductase; Provisiona | 83.27 | |
| PRK12939 | 250 | short chain dehydrogenase; Provisional | 83.17 | |
| PRK09496 | 453 | trkA potassium transporter peripheral membrane com | 82.69 | |
| PF11312 | 315 | DUF3115: Protein of unknown function (DUF3115); In | 82.57 | |
| PLN02819 | 1042 | lysine-ketoglutarate reductase/saccharopine dehydr | 81.84 | |
| cd08239 | 339 | THR_DH_like L-threonine dehydrogenase (TDH)-like. | 81.74 | |
| PF00106 | 167 | adh_short: short chain dehydrogenase alcohol dehyd | 81.43 | |
| PRK07904 | 253 | short chain dehydrogenase; Provisional | 81.26 | |
| PLN03209 | 576 | translocon at the inner envelope of chloroplast su | 81.24 | |
| PRK08340 | 259 | glucose-1-dehydrogenase; Provisional | 81.06 | |
| TIGR00561 | 511 | pntA NAD(P) transhydrogenase, alpha subunit. In so | 81.05 | |
| PLN02586 | 360 | probable cinnamyl alcohol dehydrogenase | 81.02 | |
| cd08293 | 345 | PTGR2 Prostaglandin reductase. Prostaglandins and | 80.96 | |
| PF14740 | 289 | DUF4471: Domain of unknown function (DUF4471) | 80.71 | |
| TIGR01202 | 308 | bchC 2-desacetyl-2-hydroxyethyl bacteriochlorophyl | 80.7 | |
| TIGR03589 | 324 | PseB UDP-N-acetylglucosamine 4,6-dehydratase. This | 80.48 | |
| PF08484 | 160 | Methyltransf_14: C-methyltransferase C-terminal do | 80.29 |
| >KOG1596 consensus Fibrillarin and related nucleolar RNA-binding proteins [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.2e-74 Score=490.64 Aligned_cols=244 Identities=86% Similarity=1.316 Sum_probs=237.7
Q ss_pred CCCCCCCCceeecccccCceEEEeCCcceeeeccccCCccccCcceeEeecCCCceeeeeecCchhhHHHHHHHcccccc
Q 021911 60 GGGMKGGSKVVVEPHRHEGVFIAKGKEDALVTKNLVAGEAVYNEKRISVQNEDGTKVEYRIWNPFRSKLAAAVLGGVDNI 139 (305)
Q Consensus 60 ~g~~~~g~~~~~~~~~~~gv~~~~~~~~~l~t~~~~~~~~~y~e~~~~~~d~~~~~~~~~~~~~~~s~l~a~ll~~l~~~ 139 (305)
.++.++|+||+||||||+|||++++++|+|+|+|++|++++|.|++++++++++ ++|||+||||+|+|++.|+..++++
T Consensus 74 ~~g~~gG~~v~vEPHRh~GVfi~rgkeDaLvTkNlvpge~vYgEkRisv~~~~~-kvEyRVWnPfrSKLAA~I~gGvdni 152 (317)
T KOG1596|consen 74 AGGIKGGSKVLVEPHRHAGVFIARGKEDALVTKNLVPGESVYGEKRISVENEDG-KVEYRVWNPFRSKLAAGILGGVDNI 152 (317)
T ss_pred cccccCCceEEeccccccceEEEcCchhheeecccCCcccccCceEEEeecCCC-cEEEEEeChHHHHHHHHhhcCccce
Confidence 345678999999999999999999999999999999999999999999999876 9999999999999999999999999
Q ss_pred CCCCCCEEEEEecCCCccHHHHHhhhCCCcEEEEEeCChHHHHHHHHHHHcCCCeEEEEccCCCCcccccCCCcEeEEEE
Q 021911 140 WIKPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKRTNVIPIIEDARHPAKYRMLVGMVDVIFS 219 (305)
Q Consensus 140 ~~~~g~~VLDlG~G~G~~t~~la~~~~~~~~V~avD~s~~~~~~l~~~a~~~~nI~~~~~D~~~~~~~~~~~~~fD~V~~ 219 (305)
+++|+.+||+||+++|++++|+++.++|++.|||||+|+++.++|+.+|++++||.+|+.|++++.+|+|+..++|+||+
T Consensus 153 hikpGsKVLYLGAasGttVSHvSDiVGpeG~VYAVEfs~rsGRdL~nmAkkRtNiiPIiEDArhP~KYRmlVgmVDvIFa 232 (317)
T KOG1596|consen 153 HIKPGSKVLYLGAASGTTVSHVSDIVGPEGCVYAVEFSHRSGRDLINMAKKRTNIIPIIEDARHPAKYRMLVGMVDVIFA 232 (317)
T ss_pred eecCCceEEEeeccCCceeehhhcccCCCceEEEEEecccchHHHHHHhhccCCceeeeccCCCchheeeeeeeEEEEec
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eCCChhHHHHHHHHHhccCCCCcEEEEEEcccccCCCCchhhhHHHHHHHHHHCCCcEeEEeecCCCCCceEEEEEEEcC
Q 021911 220 DVAQPDQARILALNASYFLKAGGHFVISIKANCIDSTVPAEAVFQSEVKKLQQDQFKPFEQVTLEPFERDHACVVGGYRM 299 (305)
Q Consensus 220 d~~~~~~~~~l~~~a~~~LkpGG~lv~s~~~~~i~~~~~~~~v~~~~~~~l~~~Gf~~~e~~~l~p~~~~~~~vv~~~~~ 299 (305)
|+++|+|.+++.+||+.|||++|.|+++++++|++++.+++.+|+.|+++|++..+++.|+++|+|||+||++||+.|++
T Consensus 233 Dvaqpdq~RivaLNA~~FLk~gGhfvisikancidstv~ae~vFa~Ev~klqee~lkP~EqvtLEP~erdha~VvG~Y~~ 312 (317)
T KOG1596|consen 233 DVAQPDQARIVALNAQYFLKNGGHFVISIKANCIDSTVFAEAVFAAEVKKLQEEQLKPKEQVTLEPFERDHACVVGVYRR 312 (317)
T ss_pred cCCCchhhhhhhhhhhhhhccCCeEEEEEecccccccccHHHHHHHHHHHHHHhccCchheeccccccCCceEEEEEEec
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCC
Q 021911 300 PKKQK 304 (305)
Q Consensus 300 ~~~~~ 304 (305)
+++++
T Consensus 313 ~~~~k 317 (317)
T KOG1596|consen 313 PKKSK 317 (317)
T ss_pred CCCCC
Confidence 98753
|
|
| >PTZ00146 fibrillarin; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.6e-62 Score=437.47 Aligned_cols=237 Identities=76% Similarity=1.180 Sum_probs=223.3
Q ss_pred CceeecccccCceEEEeCCcceeeeccccCCccccCcceeEeecCCC-ceeeeeecCchhhHHHHHHHccccccCCCCCC
Q 021911 67 SKVVVEPHRHEGVFIAKGKEDALVTKNLVAGEAVYNEKRISVQNEDG-TKVEYRIWNPFRSKLAAAVLGGVDNIWIKPGA 145 (305)
Q Consensus 67 ~~~~~~~~~~~gv~~~~~~~~~l~t~~~~~~~~~y~e~~~~~~d~~~-~~~~~~~~~~~~s~l~a~ll~~l~~~~~~~g~ 145 (305)
+||+||||+++|||+.+++++.|+|+|++|++++|.|++|+++.+++ +++|||+||||+|+|++.|+..|+.+.+++++
T Consensus 55 ~~~~~~~~~~~gv~~~~~~~~~l~t~n~~pg~~vygek~~~~~~~~~~~~~eyR~w~p~rSKlaa~i~~g~~~l~IkpG~ 134 (293)
T PTZ00146 55 GKVIVVPHRFPGVFIAKGKSDALVTKNMVPGESVYGEKRISVEDAEGGEKIEYRVWNPFRSKLAAAIIGGVANIPIKPGS 134 (293)
T ss_pred CceEEeeeeecCEEEeecCCceeEeecCCCCcccccceEEeeccCCCCCcceeeeeCCcccHHHHHHHCCcceeccCCCC
Confidence 79999999999999999999999999999999999999999987654 68899999999999999999999999999999
Q ss_pred EEEEEecCCCccHHHHHhhhCCCcEEEEEeCChHHHHHHHHHHHcCCCeEEEEccCCCCcccccCCCcEeEEEEeCCChh
Q 021911 146 RVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKRTNVIPIIEDARHPAKYRMLVGMVDVIFSDVAQPD 225 (305)
Q Consensus 146 ~VLDlG~G~G~~t~~la~~~~~~~~V~avD~s~~~~~~l~~~a~~~~nI~~~~~D~~~~~~~~~~~~~fD~V~~d~~~~~ 225 (305)
+|||||||+|++++++|+++++.+.|||||+|+++.++|++++++++||.+++.|++.+..+.++..+||+||+|+++|+
T Consensus 135 ~VLDLGaG~G~~t~~lAdiVG~~G~VyAVD~s~r~~~dLl~~ak~r~NI~~I~~Da~~p~~y~~~~~~vDvV~~Dva~pd 214 (293)
T PTZ00146 135 KVLYLGAASGTTVSHVSDLVGPEGVVYAVEFSHRSGRDLTNMAKKRPNIVPIIEDARYPQKYRMLVPMVDVIFADVAQPD 214 (293)
T ss_pred EEEEeCCcCCHHHHHHHHHhCCCCEEEEEECcHHHHHHHHHHhhhcCCCEEEECCccChhhhhcccCCCCEEEEeCCCcc
Confidence 99999999999999999999888999999999988889999998889999999999876556555679999999999999
Q ss_pred HHHHHHHHHhccCCCCcEEEEEEcccccCCCCchhhhHHHHHHHHHHCCCcEeEEeecCCCCCceEEEEEEEcCCCCC
Q 021911 226 QARILALNASYFLKAGGHFVISIKANCIDSTVPAEAVFQSEVKKLQQDQFKPFEQVTLEPFERDHACVVGGYRMPKKQ 303 (305)
Q Consensus 226 ~~~~l~~~a~~~LkpGG~lv~s~~~~~i~~~~~~~~v~~~~~~~l~~~Gf~~~e~~~l~p~~~~~~~vv~~~~~~~~~ 303 (305)
|.+++.+++.++|||+|+|++++++.|++...+++.+|.+++++|++.+|+++++++++||+++|++|+++|++++++
T Consensus 215 q~~il~~na~r~LKpGG~~vI~ika~~id~g~~pe~~f~~ev~~L~~~GF~~~e~v~L~Py~~~h~~v~~~~~~~~~~ 292 (293)
T PTZ00146 215 QARIVALNAQYFLKNGGHFIISIKANCIDSTAKPEVVFASEVQKLKKEGLKPKEQLTLEPFERDHAVVIGVYRPVKKK 292 (293)
T ss_pred hHHHHHHHHHHhccCCCEEEEEEeccccccCCCHHHHHHHHHHHHHHcCCceEEEEecCCccCCcEEEEEEEcCCccC
Confidence 999998899999999999999999999999999999999999999999999999999999999999999999998754
|
|
| >PF01269 Fibrillarin: Fibrillarin; InterPro: IPR000692 Fibrillarin is a component of a nucleolar small nuclear ribonucleoprotein (SnRNP), functioning in vivo in ribosomal RNA processing [, ] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.6e-55 Score=375.43 Aligned_cols=228 Identities=76% Similarity=1.162 Sum_probs=201.4
Q ss_pred eccc-ccCceEEEeCCcceeeeccccCCccccCcceeEeecCCCceeeeeecCchhhHHHHHHHccccccCCCCCCEEEE
Q 021911 71 VEPH-RHEGVFIAKGKEDALVTKNLVAGEAVYNEKRISVQNEDGTKVEYRIWNPFRSKLAAAVLGGVDNIWIKPGARVLY 149 (305)
Q Consensus 71 ~~~~-~~~gv~~~~~~~~~l~t~~~~~~~~~y~e~~~~~~d~~~~~~~~~~~~~~~s~l~a~ll~~l~~~~~~~g~~VLD 149 (305)
|+|| +++|||+.+++.+.|+|+|++|++++|+|+++.+++. ++++|||+||||+|+|++.++.+++.++++++++||+
T Consensus 1 i~~h~~~~gvy~~~~~~~~l~T~n~~pg~~vYGEk~i~~~~~-~~~~eYR~W~P~RSKLaAai~~Gl~~~~ik~gskVLY 79 (229)
T PF01269_consen 1 IEPHERFEGVYIARGKGDALATKNLVPGESVYGEKRISVEGE-GKKVEYRVWNPFRSKLAAAILKGLENIPIKPGSKVLY 79 (229)
T ss_dssp -EEEESSTTEEEEETTSTEEEEE-SSTT--SSSSEEEEETTE----EEEEEE-TTT-HHHHHHHTT-S--S--TT-EEEE
T ss_pred CcceeeecCEEEEecCCCeEEEecCCCCCcccCceeEeecCC-CCccceeecCchhhHHHHHHHcCccccCCCCCCEEEE
Confidence 6899 9999999999999999999999999999999999885 7899999999999999999999999999999999999
Q ss_pred EecCCCccHHHHHhhhCCCcEEEEEeCChHHHHHHHHHHHcCCCeEEEEccCCCCcccccCCCcEeEEEEeCCChhHHHH
Q 021911 150 LGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKRTNVIPIIEDARHPAKYRMLVGMVDVIFSDVAQPDQARI 229 (305)
Q Consensus 150 lG~G~G~~t~~la~~~~~~~~V~avD~s~~~~~~l~~~a~~~~nI~~~~~D~~~~~~~~~~~~~fD~V~~d~~~~~~~~~ 229 (305)
||+++|++.+|+++++++++.|||||+|++..++|++++++|+||.++.+|++.+..|+++.+++|+|++|+++|+|.++
T Consensus 80 LGAasGTTVSHvSDIvg~~G~VYaVEfs~r~~rdL~~la~~R~NIiPIl~DAr~P~~Y~~lv~~VDvI~~DVaQp~Qa~I 159 (229)
T PF01269_consen 80 LGAASGTTVSHVSDIVGPDGVVYAVEFSPRSMRDLLNLAKKRPNIIPILEDARHPEKYRMLVEMVDVIFQDVAQPDQARI 159 (229)
T ss_dssp ETTTTSHHHHHHHHHHTTTSEEEEEESSHHHHHHHHHHHHHSTTEEEEES-TTSGGGGTTTS--EEEEEEE-SSTTHHHH
T ss_pred ecccCCCccchhhhccCCCCcEEEEEecchhHHHHHHHhccCCceeeeeccCCChHHhhcccccccEEEecCCChHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhccCCCCcEEEEEEcccccCCCCchhhhHHHHHHHHHHCCCcEeEEeecCCCCCceEEEEEEEcC
Q 021911 230 LALNASYFLKAGGHFVISIKANCIDSTVPAEAVFQSEVKKLQQDQFKPFEQVTLEPFERDHACVVGGYRM 299 (305)
Q Consensus 230 l~~~a~~~LkpGG~lv~s~~~~~i~~~~~~~~v~~~~~~~l~~~Gf~~~e~~~l~p~~~~~~~vv~~~~~ 299 (305)
+.+|+..+||+||++++++++.|++++.+++.+|.+++++|++.+|+++++++++||++||++|+++|++
T Consensus 160 ~~~Na~~fLk~gG~~~i~iKa~siD~t~~p~~vf~~e~~~L~~~~~~~~e~i~LePy~~dH~~vv~~y~~ 229 (229)
T PF01269_consen 160 AALNARHFLKPGGHLIISIKARSIDSTADPEEVFAEEVKKLKEEGFKPLEQITLEPYERDHAMVVGRYRK 229 (229)
T ss_dssp HHHHHHHHEEEEEEEEEEEEHHHH-SSSSHHHHHHHHHHHHHCTTCEEEEEEE-TTTSTTEEEEEEEE--
T ss_pred HHHHHHhhccCCcEEEEEEecCcccCcCCHHHHHHHHHHHHHHcCCChheEeccCCCCCCcEEEEEEecC
Confidence 9999999999999999999999999999999999999999999999999999999999999999999974
|
It is associated with U3, U8 and U13 small nuclear RNAs in mammals [] and is similar to the yeast NOP1 protein []. Fibrillarin has a well conserved sequence of around 320 amino acids, and contains 3 domains, an N-terminal Gly/Arg-rich region; a central domain resembling other RNA-binding proteins and containing an RNP-2-like consensus sequence; and a C-terminal alpha-helical domain. An evolutionarily related pre-rRNA processing protein, which lacks the Gly/Arg-rich domain, has been found in various archaebacteria.; GO: 0003723 RNA binding, 0008168 methyltransferase activity, 0006364 rRNA processing, 0008033 tRNA processing; PDB: 3PLA_E 3ID6_C 3ID5_B 1NT2_A 3NVK_J 2NNW_B 3NVM_B 3NMU_J 1PRY_A 1G8A_A .... |
| >COG1889 NOP1 Fibrillarin-like rRNA methylase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.1e-51 Score=340.65 Aligned_cols=226 Identities=62% Similarity=0.940 Sum_probs=218.7
Q ss_pred Cceeeccc-ccCceEEEeCCc--ceeeeccccCCccccCcceeEeecCCCceeeeeecCchhhHHHHHHHccccccCCCC
Q 021911 67 SKVVVEPH-RHEGVFIAKGKE--DALVTKNLVAGEAVYNEKRISVQNEDGTKVEYRIWNPFRSKLAAAVLGGVDNIWIKP 143 (305)
Q Consensus 67 ~~~~~~~~-~~~gv~~~~~~~--~~l~t~~~~~~~~~y~e~~~~~~d~~~~~~~~~~~~~~~s~l~a~ll~~l~~~~~~~ 143 (305)
.++.+++| +++|||+...++ +.|+|+|++|+.++|+|+.+.+.++ |||+|||++|+|++.+|.+|+.+.+++
T Consensus 2 ~~~~v~~~~~~~gvy~~~~~dg~~~l~T~nl~pg~~VYGE~ii~~~~~-----eYR~Wnp~RSKLaAaIl~Gl~~~pi~~ 76 (231)
T COG1889 2 AMVEVKPHERFEGVYIVRFKDGSDRLATKNLVPGERVYGERIIKVEGE-----EYREWNPRRSKLAAAILKGLKNFPIKE 76 (231)
T ss_pred ceeecccccccCCeEEEEcccccceeeeecCCCCccccCceeEEecCc-----ceeeeCcchhHHHHHHHcCcccCCcCC
Confidence 35778999 799999999876 7789999999999999999999997 999999999999999999999999999
Q ss_pred CCEEEEEecCCCccHHHHHhhhCCCcEEEEEeCChHHHHHHHHHHHcCCCeEEEEccCCCCcccccCCCcEeEEEEeCCC
Q 021911 144 GARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKRTNVIPIIEDARHPAKYRMLVGMVDVIFSDVAQ 223 (305)
Q Consensus 144 g~~VLDlG~G~G~~t~~la~~~~~~~~V~avD~s~~~~~~l~~~a~~~~nI~~~~~D~~~~~~~~~~~~~fD~V~~d~~~ 223 (305)
+++||+||+++|++.+|++++++ ++.|||||+|++..++++.++++|+||.++..|++.+..|+++.+++|+|+.|+++
T Consensus 77 g~~VLYLGAasGTTvSHVSDIv~-~G~iYaVEfs~R~~reLl~~a~~R~Ni~PIL~DA~~P~~Y~~~Ve~VDviy~DVAQ 155 (231)
T COG1889 77 GSKVLYLGAASGTTVSHVSDIVG-EGRIYAVEFSPRPMRELLDVAEKRPNIIPILEDARKPEKYRHLVEKVDVIYQDVAQ 155 (231)
T ss_pred CCEEEEeeccCCCcHhHHHhccC-CCcEEEEEecchhHHHHHHHHHhCCCceeeecccCCcHHhhhhcccccEEEEecCC
Confidence 99999999999999999999996 89999999999999999999999999999999999999999999999999999999
Q ss_pred hhHHHHHHHHHhccCCCCcEEEEEEcccccCCCCchhhhHHHHHHHHHHCCCcEeEEeecCCCCCceEEEEEEEc
Q 021911 224 PDQARILALNASYFLKAGGHFVISIKANCIDSTVPAEAVFQSEVKKLQQDQFKPFEQVTLEPFERDHACVVGGYR 298 (305)
Q Consensus 224 ~~~~~~l~~~a~~~LkpGG~lv~s~~~~~i~~~~~~~~v~~~~~~~l~~~Gf~~~e~~~l~p~~~~~~~vv~~~~ 298 (305)
|+|++++..|+..|||++|++++++|+.|++++.++.++|.+++++|++.+|+++++++++||++||++++++++
T Consensus 156 p~Qa~I~~~Na~~FLk~~G~~~i~iKArSIdvT~dp~~vf~~ev~kL~~~~f~i~e~~~LePye~DH~~i~~~~~ 230 (231)
T COG1889 156 PNQAEILADNAEFFLKKGGYVVIAIKARSIDVTADPEEVFKDEVEKLEEGGFEILEVVDLEPYEKDHALIVAKYK 230 (231)
T ss_pred chHHHHHHHHHHHhcccCCeEEEEEEeecccccCCHHHHHHHHHHHHHhcCceeeEEeccCCcccceEEEEEeec
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999986
|
|
| >PRK04266 fibrillarin; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-34 Score=252.90 Aligned_cols=221 Identities=52% Similarity=0.821 Sum_probs=191.3
Q ss_pred cccccCceEEEeCCcce--eeeccccCCccccCcceeEeecCCCceeeeeecCchhhHHHHHHHccccccCCCCCCEEEE
Q 021911 72 EPHRHEGVFIAKGKEDA--LVTKNLVAGEAVYNEKRISVQNEDGTKVEYRIWNPFRSKLAAAVLGGVDNIWIKPGARVLY 149 (305)
Q Consensus 72 ~~~~~~gv~~~~~~~~~--l~t~~~~~~~~~y~e~~~~~~d~~~~~~~~~~~~~~~s~l~a~ll~~l~~~~~~~g~~VLD 149 (305)
.+|+++|+|+.+++++. |+|+|++|++++|.+........ +|+.|+|+++++++.++..++.+.++++.+|||
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~-----~~~~~~~~r~~~~~~ll~~~~~l~i~~g~~VlD 78 (226)
T PRK04266 4 KKEIFEGVYEVEFEDGSKRLATKNLVPGKRVYGERLIKWEGV-----EYREWNPRRSKLAAAILKGLKNFPIKKGSKVLY 78 (226)
T ss_pred cccccCCEEEEecCCCcceEeeecCCCCCCCCCceEEecCCc-----EEEEECCCccchHHHHHhhHhhCCCCCCCEEEE
Confidence 58999999999986666 79999999999999988665543 899999999999999997665568899999999
Q ss_pred EecCCCccHHHHHhhhCCCcEEEEEeCChHHHHHHHHHHHcCCCeEEEEccCCCCcccccCCCcEeEEEEeCCChhHHHH
Q 021911 150 LGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKRTNVIPIIEDARHPAKYRMLVGMVDVIFSDVAQPDQARI 229 (305)
Q Consensus 150 lG~G~G~~t~~la~~~~~~~~V~avD~s~~~~~~l~~~a~~~~nI~~~~~D~~~~~~~~~~~~~fD~V~~d~~~~~~~~~ 229 (305)
+|||+|.++.++++.++ .++||++|+++.+++.+.+.+++++||.++.+|+..+..+..+..+||+|+++++.+++..+
T Consensus 79 ~G~G~G~~~~~la~~v~-~g~V~avD~~~~ml~~l~~~a~~~~nv~~i~~D~~~~~~~~~l~~~~D~i~~d~~~p~~~~~ 157 (226)
T PRK04266 79 LGAASGTTVSHVSDIVE-EGVVYAVEFAPRPMRELLEVAEERKNIIPILADARKPERYAHVVEKVDVIYQDVAQPNQAEI 157 (226)
T ss_pred EccCCCHHHHHHHHhcC-CCeEEEEECCHHHHHHHHHHhhhcCCcEEEECCCCCcchhhhccccCCEEEECCCChhHHHH
Confidence 99999999999999985 67999999999888888888877789999999997643222234679999999998888766
Q ss_pred HHHHHhccCCCCcEEEEEEcccccCCCCchhhhHHHHHHHHHHCCCcEeEEeecCCCCCceEEEEEEEc
Q 021911 230 LALNASYFLKAGGHFVISIKANCIDSTVPAEAVFQSEVKKLQQDQFKPFEQVTLEPFERDHACVVGGYR 298 (305)
Q Consensus 230 l~~~a~~~LkpGG~lv~s~~~~~i~~~~~~~~v~~~~~~~l~~~Gf~~~e~~~l~p~~~~~~~vv~~~~ 298 (305)
+..++.++|||||+|++++++.+++...++...+..++++++++||++++.+++.||.++|+.++++|+
T Consensus 158 ~L~~~~r~LKpGG~lvI~v~~~~~d~~~~~~~~~~~~~~~l~~aGF~~i~~~~l~p~~~~h~~~v~~~~ 226 (226)
T PRK04266 158 AIDNAEFFLKDGGYLLLAIKARSIDVTKDPKEIFKEEIRKLEEGGFEILEVVDLEPYHKDHAAVVARKK 226 (226)
T ss_pred HHHHHHHhcCCCcEEEEEEecccccCcCCHHHHHHHHHHHHHHcCCeEEEEEcCCCCcCCeEEEEEEcC
Confidence 555999999999999998877677777777777777889999999999999999999999999999985
|
|
| >COG0144 Sun tRNA and rRNA cytosine-C5-methylases [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.87 E-value=3.2e-21 Score=180.91 Aligned_cols=146 Identities=35% Similarity=0.381 Sum_probs=124.5
Q ss_pred cCCccccCcceeEeecCCCceeeeeecCchhhHHHHHHHccccccCCCCCCEEEEEecCCCccHHHHHhhhCCCc-EEEE
Q 021911 95 VAGEAVYNEKRISVQNEDGTKVEYRIWNPFRSKLAAAVLGGVDNIWIKPGARVLYLGAASGTTVSHVSDIVGPNG-VVYA 173 (305)
Q Consensus 95 ~~~~~~y~e~~~~~~d~~~~~~~~~~~~~~~s~l~a~ll~~l~~~~~~~g~~VLDlG~G~G~~t~~la~~~~~~~-~V~a 173 (305)
+.....|.+++|++||. .|++++.+| +++|+++|||+||++|.+|.|+|+.+...+ .|+|
T Consensus 127 ~~~~~~~~~G~~~vQd~-------------sS~l~a~~L------~p~pge~VlD~cAAPGGKTthla~~~~~~~~iV~A 187 (355)
T COG0144 127 IGRLPEFAEGLIYVQDE-------------ASQLPALVL------DPKPGERVLDLCAAPGGKTTHLAELMENEGAIVVA 187 (355)
T ss_pred cccChhhhceEEEEcCH-------------HHHHHHHHc------CCCCcCEEEEECCCCCCHHHHHHHhcCCCCceEEE
Confidence 44566899999999998 999999998 799999999999999999999999986544 4699
Q ss_pred EeCChHHHHHHHHHHHcC--CCeEEEEccCCCCcccccCCCcEeEEEEeCCCh-------------------------hH
Q 021911 174 VEFSHRSGRDLVNMAKKR--TNVIPIIEDARHPAKYRMLVGMVDVIFSDVAQP-------------------------DQ 226 (305)
Q Consensus 174 vD~s~~~~~~l~~~a~~~--~nI~~~~~D~~~~~~~~~~~~~fD~V~~d~~~~-------------------------~~ 226 (305)
+|+|+++++.+.++++.. .|+..++.|............+||.|++|+||. .|
T Consensus 188 ~D~~~~Rl~~l~~nl~RlG~~nv~~~~~d~~~~~~~~~~~~~fD~iLlDaPCSg~G~irr~Pd~~~~~~~~~i~~l~~lQ 267 (355)
T COG0144 188 VDVSPKRLKRLRENLKRLGVRNVIVVNKDARRLAELLPGGEKFDRILLDAPCSGTGVIRRDPDVKWRRTPEDIAELAKLQ 267 (355)
T ss_pred EcCCHHHHHHHHHHHHHcCCCceEEEecccccccccccccCcCcEEEECCCCCCCcccccCccccccCCHHHHHHHHHHH
Confidence 999999988888888765 678889999876654322233699999999952 48
Q ss_pred HHHHHHHHhccCCCCcEEEEEEcccccCCCCchhhh
Q 021911 227 ARILALNASYFLKAGGHFVISIKANCIDSTVPAEAV 262 (305)
Q Consensus 227 ~~~l~~~a~~~LkpGG~lv~s~~~~~i~~~~~~~~v 262 (305)
.++|. ++.++|||||.|+||| |++...+|+.++
T Consensus 268 ~~iL~-~a~~~lk~GG~LVYST--CS~~~eENE~vV 300 (355)
T COG0144 268 KEILA-AALKLLKPGGVLVYST--CSLTPEENEEVV 300 (355)
T ss_pred HHHHH-HHHHhcCCCCEEEEEc--cCCchhcCHHHH
Confidence 99998 9999999999999999 888888888776
|
|
| >PRK14901 16S rRNA methyltransferase B; Provisional | Back alignment and domain information |
|---|
Probab=99.85 E-value=2.6e-20 Score=179.64 Aligned_cols=202 Identities=21% Similarity=0.282 Sum_probs=146.3
Q ss_pred ccccCceEEEeC--Cccee-eec--cccCCccccCcceeEeecCCCceeeeeecCchhhHHHHHHHccccccCCCCCCEE
Q 021911 73 PHRHEGVFIAKG--KEDAL-VTK--NLVAGEAVYNEKRISVQNEDGTKVEYRIWNPFRSKLAAAVLGGVDNIWIKPGARV 147 (305)
Q Consensus 73 ~~~~~gv~~~~~--~~~~l-~t~--~~~~~~~~y~e~~~~~~d~~~~~~~~~~~~~~~s~l~a~ll~~l~~~~~~~g~~V 147 (305)
.+..+|+-+.+. .++.+ +.. +.+...+.|.++.+.+||. .|++++.++ .++++.+|
T Consensus 196 ~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~g~~~~qd~-------------~s~l~~~~l------~~~~g~~V 256 (434)
T PRK14901 196 ALAEAGITATPIPGLPQGLRLTGNPGSIRQLPGYEEGWWTVQDR-------------SAQLVAPLL------DPQPGEVI 256 (434)
T ss_pred HHHHCCCceEECCCCCCeEEecCCCCccccChHHhCCeEEEECH-------------HHHHHHHHh------CCCCcCEE
Confidence 344566655543 24444 322 2245667899999999998 889988877 57889999
Q ss_pred EEEecCCCccHHHHHhhhCCCcEEEEEeCChHHHHHHHHHHHcC--CCeEEEEccCCCCcccc-cCCCcEeEEEEeCCCh
Q 021911 148 LYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKR--TNVIPIIEDARHPAKYR-MLVGMVDVIFSDVAQP 224 (305)
Q Consensus 148 LDlG~G~G~~t~~la~~~~~~~~V~avD~s~~~~~~l~~~a~~~--~nI~~~~~D~~~~~~~~-~~~~~fD~V~~d~~~~ 224 (305)
||+|||+|.++.++++.+.+.++|+++|+++.++..+.++++.. .||++++.|++...... ....+||+|++|+||.
T Consensus 257 LDl~ag~G~kt~~la~~~~~~g~v~a~D~~~~rl~~~~~n~~r~g~~~v~~~~~D~~~~~~~~~~~~~~fD~Vl~DaPCS 336 (434)
T PRK14901 257 LDACAAPGGKTTHIAELMGDQGEIWAVDRSASRLKKLQENAQRLGLKSIKILAADSRNLLELKPQWRGYFDRILLDAPCS 336 (434)
T ss_pred EEeCCCCchhHHHHHHHhCCCceEEEEcCCHHHHHHHHHHHHHcCCCeEEEEeCChhhcccccccccccCCEEEEeCCCC
Confidence 99999999999999999877789999999998887777776654 57999999998764211 1246899999999852
Q ss_pred -------------------------hHHHHHHHHHhccCCCCcEEEEEEcccccCCCCchhhhHHHHHHHHHHC-CCcEe
Q 021911 225 -------------------------DQARILALNASYFLKAGGHFVISIKANCIDSTVPAEAVFQSEVKKLQQD-QFKPF 278 (305)
Q Consensus 225 -------------------------~~~~~l~~~a~~~LkpGG~lv~s~~~~~i~~~~~~~~v~~~~~~~l~~~-Gf~~~ 278 (305)
.|.+++. ++.++|||||+|+|+| |++...+++.++ ...|+++ +|++.
T Consensus 337 g~G~~~r~p~~~~~~~~~~~~~l~~~Q~~iL~-~a~~~lkpgG~lvyst--csi~~~Ene~~v----~~~l~~~~~~~~~ 409 (434)
T PRK14901 337 GLGTLHRHPDARWRQTPEKIQELAPLQAELLE-SLAPLLKPGGTLVYAT--CTLHPAENEAQI----EQFLARHPDWKLE 409 (434)
T ss_pred cccccccCcchhhhCCHHHHHHHHHHHHHHHH-HHHHhcCCCCEEEEEe--CCCChhhHHHHH----HHHHHhCCCcEec
Confidence 2778887 9999999999999999 777777766554 2333333 57654
Q ss_pred EEee-cCCCC-CceEEEEEEEcCC
Q 021911 279 EQVT-LEPFE-RDHACVVGGYRMP 300 (305)
Q Consensus 279 e~~~-l~p~~-~~~~~vv~~~~~~ 300 (305)
.... +.|+. ....+++++.++.
T Consensus 410 ~~~~~~~P~~~~~dGfF~a~l~k~ 433 (434)
T PRK14901 410 PPKQKIWPHRQDGDGFFMAVLRKK 433 (434)
T ss_pred CCCCccCCCCCCCCcEEEEEEEeC
Confidence 3222 34543 3355566666554
|
|
| >PRK14903 16S rRNA methyltransferase B; Provisional | Back alignment and domain information |
|---|
Probab=99.84 E-value=5.3e-20 Score=177.03 Aligned_cols=167 Identities=25% Similarity=0.314 Sum_probs=131.6
Q ss_pred cccccCceEEEeC--Cccee-eec--cccCCccccCcceeEeecCCCceeeeeecCchhhHHHHHHHccccccCCCCCCE
Q 021911 72 EPHRHEGVFIAKG--KEDAL-VTK--NLVAGEAVYNEKRISVQNEDGTKVEYRIWNPFRSKLAAAVLGGVDNIWIKPGAR 146 (305)
Q Consensus 72 ~~~~~~gv~~~~~--~~~~l-~t~--~~~~~~~~y~e~~~~~~d~~~~~~~~~~~~~~~s~l~a~ll~~l~~~~~~~g~~ 146 (305)
+.+..+|+-+.+. .++.+ +.. ..+.....|.++.+.+||. .|++++.++ .+.++.+
T Consensus 180 ~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~Qd~-------------~s~~~~~~l------~~~~g~~ 240 (431)
T PRK14903 180 KILAEEGTEAVPGKHSPFSLIVRKLGVNMNDSRVIKDGLATVQGE-------------SSQIVPLLM------ELEPGLR 240 (431)
T ss_pred HHHHHCCCeeEECCCCCceEEEcCCCCCcccChHHHCCeEEEECH-------------HHHHHHHHh------CCCCCCE
Confidence 3345566655554 23444 221 2245667899999999998 888888887 6888999
Q ss_pred EEEEecCCCccHHHHHhhhCCCcEEEEEeCChHHHHHHHHHHHcC--CCeEEEEccCCCCcccccCCCcEeEEEEeCCC-
Q 021911 147 VLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKR--TNVIPIIEDARHPAKYRMLVGMVDVIFSDVAQ- 223 (305)
Q Consensus 147 VLDlG~G~G~~t~~la~~~~~~~~V~avD~s~~~~~~l~~~a~~~--~nI~~~~~D~~~~~~~~~~~~~fD~V~~d~~~- 223 (305)
|||+|||+|.+|.++++.+++.++|+|+|+|+.+++.+.+++++. ++|++++.|++.+... ...+||+|++|+||
T Consensus 241 VLD~cagpGgkt~~la~~~~~~g~V~a~Dis~~rl~~~~~n~~r~g~~~v~~~~~Da~~l~~~--~~~~fD~Vl~DaPCs 318 (431)
T PRK14903 241 VLDTCAAPGGKTTAIAELMKDQGKILAVDISREKIQLVEKHAKRLKLSSIEIKIADAERLTEY--VQDTFDRILVDAPCT 318 (431)
T ss_pred EEEeCCCccHHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHHcCCCeEEEEECchhhhhhh--hhccCCEEEECCCCC
Confidence 999999999999999999877889999999998887777777654 5789999999875422 24689999999996
Q ss_pred ------------------------hhHHHHHHHHHhccCCCCcEEEEEEcccccCCCCchhhh
Q 021911 224 ------------------------PDQARILALNASYFLKAGGHFVISIKANCIDSTVPAEAV 262 (305)
Q Consensus 224 ------------------------~~~~~~l~~~a~~~LkpGG~lv~s~~~~~i~~~~~~~~v 262 (305)
..|.++|. ++.++|||||+|+|+| |++...+++.++
T Consensus 319 g~G~~~~~p~~~~~~~~~~~~~l~~~Q~~iL~-~a~~~LkpGG~LvYsT--Cs~~~eEne~vv 378 (431)
T PRK14903 319 SLGTARNHPEVLRRVNKEDFKKLSEIQLRIVS-QAWKLLEKGGILLYST--CTVTKEENTEVV 378 (431)
T ss_pred CCccccCChHHHHhCCHHHHHHHHHHHHHHHH-HHHHhcCCCCEEEEEE--CCCChhhCHHHH
Confidence 14778887 9999999999999999 777777777665
|
|
| >PRK11933 yebU rRNA (cytosine-C(5)-)-methyltransferase RsmF; Reviewed | Back alignment and domain information |
|---|
Probab=99.84 E-value=4.7e-20 Score=178.00 Aligned_cols=146 Identities=23% Similarity=0.212 Sum_probs=123.8
Q ss_pred cCCccccCcceeEeecCCCceeeeeecCchhhHHHHHHHccccccCCCCCCEEEEEecCCCccHHHHHhhhCCCcEEEEE
Q 021911 95 VAGEAVYNEKRISVQNEDGTKVEYRIWNPFRSKLAAAVLGGVDNIWIKPGARVLYLGAASGTTVSHVSDIVGPNGVVYAV 174 (305)
Q Consensus 95 ~~~~~~y~e~~~~~~d~~~~~~~~~~~~~~~s~l~a~ll~~l~~~~~~~g~~VLDlG~G~G~~t~~la~~~~~~~~V~av 174 (305)
+.....|.++.+++||+ +|++++.+|. ..++++++|||+|||+|.+|+|+|+.+++.+.|+|+
T Consensus 82 ~~~~~~~~~G~~yvQd~-------------sS~l~~~~L~----~~~~pg~~VLD~CAAPGgKTt~la~~l~~~g~lvA~ 144 (470)
T PRK11933 82 LGNTAEHLSGLFYIQEA-------------SSMLPVAALF----ADDNAPQRVLDMAAAPGSKTTQIAALMNNQGAIVAN 144 (470)
T ss_pred cccChHHHCCcEEEECH-------------HHHHHHHHhc----cCCCCCCEEEEeCCCccHHHHHHHHHcCCCCEEEEE
Confidence 45677899999999998 9999988762 146899999999999999999999999888899999
Q ss_pred eCChHHHHHHHHHHHcC--CCeEEEEccCCCCcccccCCCcEeEEEEeCCCh-------------------------hHH
Q 021911 175 EFSHRSGRDLVNMAKKR--TNVIPIIEDARHPAKYRMLVGMVDVIFSDVAQP-------------------------DQA 227 (305)
Q Consensus 175 D~s~~~~~~l~~~a~~~--~nI~~~~~D~~~~~~~~~~~~~fD~V~~d~~~~-------------------------~~~ 227 (305)
|+++.++..+.+++++. .||.+...|.+.+... ....||.|++|+||. .|.
T Consensus 145 D~~~~R~~~L~~nl~r~G~~nv~v~~~D~~~~~~~--~~~~fD~ILvDaPCSG~G~~rk~p~~~~~~s~~~v~~l~~lQ~ 222 (470)
T PRK11933 145 EYSASRVKVLHANISRCGVSNVALTHFDGRVFGAA--LPETFDAILLDAPCSGEGTVRKDPDALKNWSPESNLEIAATQR 222 (470)
T ss_pred eCCHHHHHHHHHHHHHcCCCeEEEEeCchhhhhhh--chhhcCeEEEcCCCCCCcccccCHHHhhhCCHHHHHHHHHHHH
Confidence 99999888888887765 6888889998765432 246899999999953 488
Q ss_pred HHHHHHHhccCCCCcEEEEEEcccccCCCCchhhh
Q 021911 228 RILALNASYFLKAGGHFVISIKANCIDSTVPAEAV 262 (305)
Q Consensus 228 ~~l~~~a~~~LkpGG~lv~s~~~~~i~~~~~~~~v 262 (305)
++|. +|.++|||||+|+||| |++...+|+.++
T Consensus 223 ~iL~-~A~~~LkpGG~LVYST--CT~~~eENE~vV 254 (470)
T PRK11933 223 ELIE-SAFHALKPGGTLVYST--CTLNREENQAVC 254 (470)
T ss_pred HHHH-HHHHHcCCCcEEEEEC--CCCCHHHHHHHH
Confidence 8998 9999999999999999 777777777665
|
|
| >TIGR00446 nop2p NOL1/NOP2/sun family putative RNA methylase | Back alignment and domain information |
|---|
Probab=99.84 E-value=2.5e-20 Score=168.63 Aligned_cols=143 Identities=24% Similarity=0.268 Sum_probs=119.9
Q ss_pred cCCccccCcceeEeecCCCceeeeeecCchhhHHHHHHHccccccCCCCCCEEEEEecCCCccHHHHHhhhCCCcEEEEE
Q 021911 95 VAGEAVYNEKRISVQNEDGTKVEYRIWNPFRSKLAAAVLGGVDNIWIKPGARVLYLGAASGTTVSHVSDIVGPNGVVYAV 174 (305)
Q Consensus 95 ~~~~~~y~e~~~~~~d~~~~~~~~~~~~~~~s~l~a~ll~~l~~~~~~~g~~VLDlG~G~G~~t~~la~~~~~~~~V~av 174 (305)
+...+.|.++.+++||. .|++++.++ .++++.+|||+|||+|.++.++++.+.+.+.|+++
T Consensus 42 ~~~~~~~~~G~~~~qd~-------------~s~~~~~~l------~~~~g~~VLDl~ag~G~kt~~la~~~~~~g~v~a~ 102 (264)
T TIGR00446 42 IGSTPEYLSGLYYIQEA-------------SSMIPPLAL------EPDPPERVLDMAAAPGGKTTQISALMKNEGAIVAN 102 (264)
T ss_pred cccChhHhCCeEEEECH-------------HHHHHHHHh------CCCCcCEEEEECCCchHHHHHHHHHcCCCCEEEEE
Confidence 56678899999999998 899888887 68899999999999999999999998777899999
Q ss_pred eCChHHHHHHHHHHHcC--CCeEEEEccCCCCcccccCCCcEeEEEEeCCCh-------------------------hHH
Q 021911 175 EFSHRSGRDLVNMAKKR--TNVIPIIEDARHPAKYRMLVGMVDVIFSDVAQP-------------------------DQA 227 (305)
Q Consensus 175 D~s~~~~~~l~~~a~~~--~nI~~~~~D~~~~~~~~~~~~~fD~V~~d~~~~-------------------------~~~ 227 (305)
|+++.+++.+.+.++.. .+|++++.|++..... ...||+|++|+||. .|.
T Consensus 103 D~~~~~l~~~~~n~~~~g~~~v~~~~~D~~~~~~~---~~~fD~Vl~D~Pcsg~G~~~~~p~~~~~~~~~~~~~l~~~q~ 179 (264)
T TIGR00446 103 EFSKSRTKVLIANINRCGVLNVAVTNFDGRVFGAA---VPKFDAILLDAPCSGEGVIRKDPSRKKNWSEEDIQEISALQK 179 (264)
T ss_pred cCCHHHHHHHHHHHHHcCCCcEEEecCCHHHhhhh---ccCCCEEEEcCCCCCCcccccChhhhhcCCHHHHHHHHHHHH
Confidence 99998887777776654 5789999998765322 35699999999943 366
Q ss_pred HHHHHHHhccCCCCcEEEEEEcccccCCCCchhhh
Q 021911 228 RILALNASYFLKAGGHFVISIKANCIDSTVPAEAV 262 (305)
Q Consensus 228 ~~l~~~a~~~LkpGG~lv~s~~~~~i~~~~~~~~v 262 (305)
++|. ++.++|||||+|+|+| |++...+++.++
T Consensus 180 ~iL~-~a~~~lkpgG~lvYst--cs~~~~Ene~vv 211 (264)
T TIGR00446 180 ELID-SAFDALKPGGVLVYST--CSLEPEENEAVV 211 (264)
T ss_pred HHHH-HHHHhcCCCCEEEEEe--CCCChHHHHHHH
Confidence 7887 9999999999999999 777777766554
|
|
| >PRK14902 16S rRNA methyltransferase B; Provisional | Back alignment and domain information |
|---|
Probab=99.81 E-value=1.2e-18 Score=168.56 Aligned_cols=164 Identities=28% Similarity=0.360 Sum_probs=126.3
Q ss_pred cccCceEEEeC--Cccee-eeccccCCccccCcceeEeecCCCceeeeeecCchhhHHHHHHHccccccCCCCCCEEEEE
Q 021911 74 HRHEGVFIAKG--KEDAL-VTKNLVAGEAVYNEKRISVQNEDGTKVEYRIWNPFRSKLAAAVLGGVDNIWIKPGARVLYL 150 (305)
Q Consensus 74 ~~~~gv~~~~~--~~~~l-~t~~~~~~~~~y~e~~~~~~d~~~~~~~~~~~~~~~s~l~a~ll~~l~~~~~~~g~~VLDl 150 (305)
+..+|+-+.+. .++.+ +....+.....|.++.+++||. .+++++.++ .+.++.+|||+
T Consensus 197 l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~qd~-------------~s~lv~~~l------~~~~g~~VLDl 257 (444)
T PRK14902 197 LEEEGYEVEESLLSPEALVIEKGNIAGTDLFKDGLITIQDE-------------SSMLVAPAL------DPKGGDTVLDA 257 (444)
T ss_pred HHHcCceeEEcCCCCCeEEEeCCCcccChHHhCceEEEECh-------------HHHHHHHHh------CCCCCCEEEEe
Confidence 34445544443 23344 3333466778999999999998 888888877 57788999999
Q ss_pred ecCCCccHHHHHhhhCCCcEEEEEeCChHHHHHHHHHHHcC--CCeEEEEccCCCCcccccCCCcEeEEEEeCCCh----
Q 021911 151 GAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKR--TNVIPIIEDARHPAKYRMLVGMVDVIFSDVAQP---- 224 (305)
Q Consensus 151 G~G~G~~t~~la~~~~~~~~V~avD~s~~~~~~l~~~a~~~--~nI~~~~~D~~~~~~~~~~~~~fD~V~~d~~~~---- 224 (305)
|||+|.++.++++.+++.++|+++|+++.++..+.+++++. .+|.+++.|+...... ...+||+|++|+||.
T Consensus 258 gaG~G~~t~~la~~~~~~~~v~avDi~~~~l~~~~~n~~~~g~~~v~~~~~D~~~~~~~--~~~~fD~Vl~D~Pcsg~G~ 335 (444)
T PRK14902 258 CAAPGGKTTHIAELLKNTGKVVALDIHEHKLKLIEENAKRLGLTNIETKALDARKVHEK--FAEKFDKILVDAPCSGLGV 335 (444)
T ss_pred CCCCCHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEeCCcccccch--hcccCCEEEEcCCCCCCee
Confidence 99999999999998866789999999998777777666654 5799999999775421 136899999999842
Q ss_pred ---------------------hHHHHHHHHHhccCCCCcEEEEEEcccccCCCCchhh
Q 021911 225 ---------------------DQARILALNASYFLKAGGHFVISIKANCIDSTVPAEA 261 (305)
Q Consensus 225 ---------------------~~~~~l~~~a~~~LkpGG~lv~s~~~~~i~~~~~~~~ 261 (305)
.|.+++. ++.++|||||+|+|+| |++...+++.+
T Consensus 336 ~~~~p~~~~~~~~~~~~~l~~~q~~iL~-~a~~~LkpGG~lvyst--cs~~~~Ene~v 390 (444)
T PRK14902 336 IRRKPDIKYNKTKEDIESLQEIQLEILE-SVAQYLKKGGILVYST--CTIEKEENEEV 390 (444)
T ss_pred eccCcchhhcCCHHHHHHHHHHHHHHHH-HHHHHcCCCCEEEEEc--CCCChhhhHHH
Confidence 2456777 9999999999999999 77776666553
|
|
| >PRK14904 16S rRNA methyltransferase B; Provisional | Back alignment and domain information |
|---|
Probab=99.80 E-value=2.9e-18 Score=165.94 Aligned_cols=139 Identities=27% Similarity=0.295 Sum_probs=115.2
Q ss_pred ccccCcceeEeecCCCceeeeeecCchhhHHHHHHHccccccCCCCCCEEEEEecCCCccHHHHHhhhCCCcEEEEEeCC
Q 021911 98 EAVYNEKRISVQNEDGTKVEYRIWNPFRSKLAAAVLGGVDNIWIKPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFS 177 (305)
Q Consensus 98 ~~~y~e~~~~~~d~~~~~~~~~~~~~~~s~l~a~ll~~l~~~~~~~g~~VLDlG~G~G~~t~~la~~~~~~~~V~avD~s 177 (305)
.+.|.++.+++||+ .+.++..++ .+.++.+|||+|||+|.++.++++.+...++|+++|+|
T Consensus 224 ~~~~~~G~~~vqd~-------------~s~l~~~~l------~~~~g~~VLDlgaG~G~kt~~la~~~~~~~~V~avD~s 284 (445)
T PRK14904 224 EPFLKLGLVSVQNP-------------TQALACLLL------NPQPGSTVLDLCAAPGGKSTFMAELMQNRGQITAVDRY 284 (445)
T ss_pred ChHHhCcEEEEeCH-------------HHHHHHHhc------CCCCCCEEEEECCCCCHHHHHHHHHhCCCcEEEEEECC
Confidence 36899999999997 788888776 57789999999999999999999988667799999999
Q ss_pred hHHHHHHHHHHHcC--CCeEEEEccCCCCcccccCCCcEeEEEEeCCCh-------------------------hHHHHH
Q 021911 178 HRSGRDLVNMAKKR--TNVIPIIEDARHPAKYRMLVGMVDVIFSDVAQP-------------------------DQARIL 230 (305)
Q Consensus 178 ~~~~~~l~~~a~~~--~nI~~~~~D~~~~~~~~~~~~~fD~V~~d~~~~-------------------------~~~~~l 230 (305)
+.++..+.+.++.. .+|++++.|+....+ ..+||+|++|+||. .|.++|
T Consensus 285 ~~~l~~~~~~~~~~g~~~v~~~~~Da~~~~~----~~~fD~Vl~D~Pcsg~g~~~r~p~~~~~~~~~~~~~l~~~q~~iL 360 (445)
T PRK14904 285 PQKLEKIRSHASALGITIIETIEGDARSFSP----EEQPDAILLDAPCTGTGVLGRRAELRWKLTPEKLAELVGLQAELL 360 (445)
T ss_pred HHHHHHHHHHHHHhCCCeEEEEeCccccccc----CCCCCEEEEcCCCCCcchhhcCcchhhcCCHHHHHHHHHHHHHHH
Confidence 98777776666554 578999999977542 35899999999851 356677
Q ss_pred HHHHhccCCCCcEEEEEEcccccCCCCchhhh
Q 021911 231 ALNASYFLKAGGHFVISIKANCIDSTVPAEAV 262 (305)
Q Consensus 231 ~~~a~~~LkpGG~lv~s~~~~~i~~~~~~~~v 262 (305)
. ++.++|||||+|+|+| |++...+|+.++
T Consensus 361 ~-~a~~~lkpgG~lvyst--cs~~~~Ene~~v 389 (445)
T PRK14904 361 D-HAASLLKPGGVLVYAT--CSIEPEENELQI 389 (445)
T ss_pred H-HHHHhcCCCcEEEEEe--CCCChhhHHHHH
Confidence 7 9999999999999999 777777776554
|
|
| >TIGR00563 rsmB ribosomal RNA small subunit methyltransferase RsmB | Back alignment and domain information |
|---|
Probab=99.79 E-value=3.1e-18 Score=164.91 Aligned_cols=167 Identities=19% Similarity=0.202 Sum_probs=124.4
Q ss_pred cccccCceEEEeC--Cccee-ee-ccccCCccccCcceeEeecCCCceeeeeecCchhhHHHHHHHccccccCCCCCCEE
Q 021911 72 EPHRHEGVFIAKG--KEDAL-VT-KNLVAGEAVYNEKRISVQNEDGTKVEYRIWNPFRSKLAAAVLGGVDNIWIKPGARV 147 (305)
Q Consensus 72 ~~~~~~gv~~~~~--~~~~l-~t-~~~~~~~~~y~e~~~~~~d~~~~~~~~~~~~~~~s~l~a~ll~~l~~~~~~~g~~V 147 (305)
+.+..+|+.+.+. .++++ +. ...+...+.|.++++++||. +|++++.++ .+.++.+|
T Consensus 182 ~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~Qd~-------------~s~~~~~~L------~~~~g~~V 242 (426)
T TIGR00563 182 ALLAEAGMKGFPHDLAPDAVRLETPAAVHALPGFEEGWVTVQDA-------------SAQWVATWL------APQNEETI 242 (426)
T ss_pred HHHHhcCCceeeCCCCCCeEEECCCCCcccCchhhCCeEEEECH-------------HHHHHHHHh------CCCCCCeE
Confidence 3444555555443 23333 22 11255677899999999998 899988887 57889999
Q ss_pred EEEecCCCccHHHHHhhhCCCcEEEEEeCChHHHHHHHHHHHcCC-CeE--EEEccCCCCcccccCCCcEeEEEEeCCCh
Q 021911 148 LYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKRT-NVI--PIIEDARHPAKYRMLVGMVDVIFSDVAQP 224 (305)
Q Consensus 148 LDlG~G~G~~t~~la~~~~~~~~V~avD~s~~~~~~l~~~a~~~~-nI~--~~~~D~~~~~~~~~~~~~fD~V~~d~~~~ 224 (305)
||+|||+|.++.++++.++ .++|+++|+++.++..+.+++++.. .+. ++..|....... ....+||+|++|+||.
T Consensus 243 LDlcag~G~kt~~la~~~~-~~~v~a~D~~~~~l~~~~~n~~r~g~~~~v~~~~~d~~~~~~~-~~~~~fD~VllDaPcS 320 (426)
T TIGR00563 243 LDACAAPGGKTTHILELAP-QAQVVALDIHEHRLKRVYENLKRLGLTIKAETKDGDGRGPSQW-AENEQFDRILLDAPCS 320 (426)
T ss_pred EEeCCCccHHHHHHHHHcC-CCeEEEEeCCHHHHHHHHHHHHHcCCCeEEEEecccccccccc-ccccccCEEEEcCCCC
Confidence 9999999999999999875 6899999999988777776666541 233 355666543321 1246899999999842
Q ss_pred -------------------------hHHHHHHHHHhccCCCCcEEEEEEcccccCCCCchhhh
Q 021911 225 -------------------------DQARILALNASYFLKAGGHFVISIKANCIDSTVPAEAV 262 (305)
Q Consensus 225 -------------------------~~~~~l~~~a~~~LkpGG~lv~s~~~~~i~~~~~~~~v 262 (305)
.|.++|. +++++|||||+|+|+| |++...+++.++
T Consensus 321 g~G~~~~~p~~~~~~~~~~~~~l~~lQ~~lL~-~a~~~LkpgG~lvyst--cs~~~~Ene~~v 380 (426)
T TIGR00563 321 ATGVIRRHPDIKWLRKPRDIAELAELQSEILD-AIWPLLKTGGTLVYAT--CSVLPEENSEQI 380 (426)
T ss_pred CCcccccCcchhhcCCHHHHHHHHHHHHHHHH-HHHHhcCCCcEEEEEe--CCCChhhCHHHH
Confidence 2778887 9999999999999999 888888887765
|
The seed alignment is built from bacterial sequences only. Eukaryotic homologs include Nop2, a protein required for processing pre-rRNA, that is likely also a rRNA methyltransferase, although the fine specificity may differ. Cutoff scores are set to avoid treating archaeal and eukaroytic homologs automatically as functionally equivalent, although they may have very similar roles. |
| >PRK10901 16S rRNA methyltransferase B; Provisional | Back alignment and domain information |
|---|
Probab=99.78 E-value=2.3e-17 Score=158.93 Aligned_cols=144 Identities=25% Similarity=0.289 Sum_probs=116.1
Q ss_pred cCCccccCcceeEeecCCCceeeeeecCchhhHHHHHHHccccccCCCCCCEEEEEecCCCccHHHHHhhhCCCcEEEEE
Q 021911 95 VAGEAVYNEKRISVQNEDGTKVEYRIWNPFRSKLAAAVLGGVDNIWIKPGARVLYLGAASGTTVSHVSDIVGPNGVVYAV 174 (305)
Q Consensus 95 ~~~~~~y~e~~~~~~d~~~~~~~~~~~~~~~s~l~a~ll~~l~~~~~~~g~~VLDlG~G~G~~t~~la~~~~~~~~V~av 174 (305)
+.....|.++.+++||. .|++++.++ .+.++.+|||+|||+|.++.++++.+. .++|+++
T Consensus 215 ~~~~~~~~~G~~~iQd~-------------~s~~~~~~l------~~~~g~~VLDlgaG~G~~t~~la~~~~-~~~v~a~ 274 (427)
T PRK10901 215 VHQLPGFAEGWVSVQDA-------------AAQLAATLL------APQNGERVLDACAAPGGKTAHILELAP-QAQVVAL 274 (427)
T ss_pred cccCchhhCceEEEECH-------------HHHHHHHHc------CCCCCCEEEEeCCCCChHHHHHHHHcC-CCEEEEE
Confidence 45567899999999998 889998887 578899999999999999999999863 3799999
Q ss_pred eCChHHHHHHHHHHHcC-CCeEEEEccCCCCcccccCCCcEeEEEEeCCCh-------------------------hHHH
Q 021911 175 EFSHRSGRDLVNMAKKR-TNVIPIIEDARHPAKYRMLVGMVDVIFSDVAQP-------------------------DQAR 228 (305)
Q Consensus 175 D~s~~~~~~l~~~a~~~-~nI~~~~~D~~~~~~~~~~~~~fD~V~~d~~~~-------------------------~~~~ 228 (305)
|+|+.++..+.+.+++. .++.+++.|+..+... ....+||.|++|+||. .|.+
T Consensus 275 D~s~~~l~~~~~n~~~~g~~~~~~~~D~~~~~~~-~~~~~fD~Vl~D~Pcs~~G~~~~~p~~~~~~~~~~l~~l~~~q~~ 353 (427)
T PRK10901 275 DIDAQRLERVRENLQRLGLKATVIVGDARDPAQW-WDGQPFDRILLDAPCSATGVIRRHPDIKWLRRPEDIAALAALQSE 353 (427)
T ss_pred eCCHHHHHHHHHHHHHcCCCeEEEEcCcccchhh-cccCCCCEEEECCCCCcccccccCccccccCCHHHHHHHHHHHHH
Confidence 99997777777666654 3578889999865321 1235799999999853 1456
Q ss_pred HHHHHHhccCCCCcEEEEEEcccccCCCCchhhh
Q 021911 229 ILALNASYFLKAGGHFVISIKANCIDSTVPAEAV 262 (305)
Q Consensus 229 ~l~~~a~~~LkpGG~lv~s~~~~~i~~~~~~~~v 262 (305)
++. ++.++|||||+|+|+| |++...+++.++
T Consensus 354 iL~-~a~~~LkpGG~lvyst--cs~~~~Ene~~v 384 (427)
T PRK10901 354 ILD-ALWPLLKPGGTLLYAT--CSILPEENEQQI 384 (427)
T ss_pred HHH-HHHHhcCCCCEEEEEe--CCCChhhCHHHH
Confidence 776 9999999999999999 777777777644
|
|
| >PF01189 Nol1_Nop2_Fmu: NOL1/NOP2/sun family; InterPro: IPR001678 This domain is found in archaeal, bacterial and eukaryotic proteins | Back alignment and domain information |
|---|
Probab=99.77 E-value=8.3e-19 Score=159.94 Aligned_cols=169 Identities=30% Similarity=0.359 Sum_probs=137.0
Q ss_pred ecccccCceEEEeC--Cccee---ee-ccccCCccccCcceeEeecCCCceeeeeecCchhhHHHHHHHccccccCCCCC
Q 021911 71 VEPHRHEGVFIAKG--KEDAL---VT-KNLVAGEAVYNEKRISVQNEDGTKVEYRIWNPFRSKLAAAVLGGVDNIWIKPG 144 (305)
Q Consensus 71 ~~~~~~~gv~~~~~--~~~~l---~t-~~~~~~~~~y~e~~~~~~d~~~~~~~~~~~~~~~s~l~a~ll~~l~~~~~~~g 144 (305)
.+.+...|+-+.+. .++.+ .. ...+.....|.++.+.+||. +|++++.+| .+.++
T Consensus 26 ~~~L~~~g~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~G~~~vQd~-------------sS~l~~~~L------~~~~~ 86 (283)
T PF01189_consen 26 LEELEEEGIQLEPIPRSPDALRVIGKSPYSICSLPEFKNGLFYVQDE-------------SSQLVALAL------DPQPG 86 (283)
T ss_dssp HHHHHHTTHEEEEETSTTCEEEEEEECSSCGGGSHHHHTTSEEEHHH-------------HHHHHHHHH------TTTTT
T ss_pred HHHHhhcccceEEcccccchhccccccccchhhchhhhCCcEEeccc-------------ccccccccc------ccccc
Confidence 34456667776653 34442 22 23355678899999999998 999999998 68999
Q ss_pred CEEEEEecCCCccHHHHHhhhCCCcEEEEEeCChHHHHHHHHHHHcC--CCeEEEEccCCCCcccccCCCcEeEEEEeCC
Q 021911 145 ARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKR--TNVIPIIEDARHPAKYRMLVGMVDVIFSDVA 222 (305)
Q Consensus 145 ~~VLDlG~G~G~~t~~la~~~~~~~~V~avD~s~~~~~~l~~~a~~~--~nI~~~~~D~~~~~~~~~~~~~fD~V~~d~~ 222 (305)
+.|||+||++|++|.|+|+.+...+.|+|+|+++.++..+.+.+++. .+|..+..|++...... ....||.|++|+|
T Consensus 87 ~~VLD~CAapGgKt~~la~~~~~~g~i~A~D~~~~Rl~~l~~~~~r~g~~~v~~~~~D~~~~~~~~-~~~~fd~VlvDaP 165 (283)
T PF01189_consen 87 ERVLDMCAAPGGKTTHLAELMGNKGEIVANDISPKRLKRLKENLKRLGVFNVIVINADARKLDPKK-PESKFDRVLVDAP 165 (283)
T ss_dssp SEEEESSCTTSHHHHHHHHHTTTTSEEEEEESSHHHHHHHHHHHHHTT-SSEEEEESHHHHHHHHH-HTTTEEEEEEECS
T ss_pred ccccccccCCCCceeeeeecccchhHHHHhccCHHHHHHHHHHHHhcCCceEEEEeeccccccccc-cccccchhhcCCC
Confidence 99999999999999999999988899999999999988888887765 68888888887764321 2346999999999
Q ss_pred Ch-------------------------hHHHHHHHHHhccC----CCCcEEEEEEcccccCCCCchhhh
Q 021911 223 QP-------------------------DQARILALNASYFL----KAGGHFVISIKANCIDSTVPAEAV 262 (305)
Q Consensus 223 ~~-------------------------~~~~~l~~~a~~~L----kpGG~lv~s~~~~~i~~~~~~~~v 262 (305)
|. .|.++|. ++.++| ||||+|+|+| |++...+|+.++
T Consensus 166 CSg~G~i~r~p~~~~~~~~~~~~~l~~~Q~~iL~-~a~~~~~~~~k~gG~lvYsT--CS~~~eENE~vV 231 (283)
T PF01189_consen 166 CSGLGTIRRNPDIKWRRSPEDIEKLAELQREILD-NAAKLLNIDFKPGGRLVYST--CSLSPEENEEVV 231 (283)
T ss_dssp CCCGGGTTTCTTHHHHE-TTHHHHHHHHHHHHHH-HHHHCEHHHBEEEEEEEEEE--SHHHGGGTHHHH
T ss_pred ccchhhhhhccchhhcccccccchHHHHHHHHHH-HHHHhhcccccCCCeEEEEe--ccHHHHHHHHHH
Confidence 42 4888998 999999 9999999999 888888887765
|
In the archaea and bacteria, they are annotated as putative nucleolar protein, Sun (Fmu) family protein or tRNA/rRNA cytosine-C5-methylase. The majority have the S-adenosyl methionine (SAM) binding domain and are related to Escherichia coli Fmu (Sun) protein (16S rRNA m5C 967 methyltransferase) whose structure has been determined []. In the eukaryota, the majority are annotated as being 'hypothetical protein', nucleolar protein or the Nop2/Sun (Fmu) family. Unlike their bacterial homologues, few of the eukaryotic members in this family have a the SAM binding signature. Despite this, Saccharomyces cerevisiae (Baker's yeast) Nop2p is a probable RNA m5C methyltransferase []. It is essential for processing and maturation of 27S pre-rRNA and large ribosomal subunit biogenesis []; localized to the nucleolus and is essential for viability []. Reduced Nop2p expression limits yeast growth and decreases levels of mature 60S ribosomal subunits while altering rRNA processing []. There is substantial identity between Nop2p and Homo sapiens (Human) p120 (NOL1), which is also called the proliferation-associated nucleolar antigen [, ].; PDB: 3M4X_A 2FRX_B 2YXL_A 1IXK_A 1SQG_A 1SQF_A 3M6U_B 3M6V_B 3M6W_A 3M6X_A .... |
| >KOG1122 consensus tRNA and rRNA cytosine-C5-methylase (nucleolar protein NOL1/NOP2) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.73 E-value=1.3e-17 Score=154.38 Aligned_cols=145 Identities=26% Similarity=0.305 Sum_probs=125.2
Q ss_pred cCCccccCcceeEeecCCCceeeeeecCchhhHHHHHHHccccccCCCCCCEEEEEecCCCccHHHHHhhhCCCcEEEEE
Q 021911 95 VAGEAVYNEKRISVQNEDGTKVEYRIWNPFRSKLAAAVLGGVDNIWIKPGARVLYLGAASGTTVSHVSDIVGPNGVVYAV 174 (305)
Q Consensus 95 ~~~~~~y~e~~~~~~d~~~~~~~~~~~~~~~s~l~a~ll~~l~~~~~~~g~~VLDlG~G~G~~t~~la~~~~~~~~V~av 174 (305)
++....|.++...+|+. .|.|....| .++|+.+|||+||+||.+|+|+|..+...+.|||.
T Consensus 212 igat~e~lag~~~LQ~~-------------sS~Lpv~aL------~Pq~gERIlDmcAAPGGKTt~IAalMkn~G~I~An 272 (460)
T KOG1122|consen 212 IGATPEYLAGHYMLQNA-------------SSFLPVMAL------DPQPGERILDMCAAPGGKTTHIAALMKNTGVIFAN 272 (460)
T ss_pred cCCchhhcccceeeccC-------------cccceeeec------CCCCCCeecchhcCCCchHHHHHHHHcCCceEEec
Confidence 45667888999999997 888888887 79999999999999999999999999999999999
Q ss_pred eCChHHHHHHHHHHHcC--CCeEEEEccCCCCcccccCCCcEeEEEEeCCC-------------------------hhHH
Q 021911 175 EFSHRSGRDLVNMAKKR--TNVIPIIEDARHPAKYRMLVGMVDVIFSDVAQ-------------------------PDQA 227 (305)
Q Consensus 175 D~s~~~~~~l~~~a~~~--~nI~~~~~D~~~~~~~~~~~~~fD~V~~d~~~-------------------------~~~~ 227 (305)
|.+..+++.+.+++... .|......|...++.-.+ ..+||.|++|+|| +.|.
T Consensus 273 D~n~~r~~~l~~n~~rlGv~ntiv~n~D~~ef~~~~~-~~~fDRVLLDAPCSGtgvi~K~~~vkt~k~~~di~~~~~LQr 351 (460)
T KOG1122|consen 273 DSNENRLKSLKANLHRLGVTNTIVSNYDGREFPEKEF-PGSFDRVLLDAPCSGTGVISKDQSVKTNKTVKDILRYAHLQR 351 (460)
T ss_pred ccchHHHHHHHHHHHHhCCCceEEEccCccccccccc-CcccceeeecCCCCCCcccccccccccchhHHHHHHhHHHHH
Confidence 99998888888888765 677888889887653322 3489999999994 3588
Q ss_pred HHHHHHHhccCCCCcEEEEEEcccccCCCCchhhh
Q 021911 228 RILALNASYFLKAGGHFVISIKANCIDSTVPAEAV 262 (305)
Q Consensus 228 ~~l~~~a~~~LkpGG~lv~s~~~~~i~~~~~~~~v 262 (305)
++|. .|.+++++||+|+||| |+|...+|+++|
T Consensus 352 ~Lll-sAi~lv~~GGvLVYST--CSI~~~ENE~vV 383 (460)
T KOG1122|consen 352 ELLL-SAIDLVKAGGVLVYST--CSITVEENEAVV 383 (460)
T ss_pred HHHH-HHHhhccCCcEEEEEe--eecchhhhHHHH
Confidence 8887 9999999999999999 889999888776
|
|
| >TIGR02752 MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone methyltransferase | Back alignment and domain information |
|---|
Probab=99.64 E-value=1.2e-14 Score=128.64 Aligned_cols=105 Identities=20% Similarity=0.203 Sum_probs=84.3
Q ss_pred CCCCCCEEEEEecCCCccHHHHHhhhCCCcEEEEEeCChHHHHHHHHHHHcC--CCeEEEEccCCCCcccccCCCcEeEE
Q 021911 140 WIKPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKR--TNVIPIIEDARHPAKYRMLVGMVDVI 217 (305)
Q Consensus 140 ~~~~g~~VLDlG~G~G~~t~~la~~~~~~~~V~avD~s~~~~~~l~~~a~~~--~nI~~~~~D~~~~~~~~~~~~~fD~V 217 (305)
.++++.+|||+|||+|.++..+++.+++.++|+++|+|+..++.+.+..+.. +++++++.|+.+.+. ...+||+|
T Consensus 42 ~~~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~---~~~~fD~V 118 (231)
T TIGR02752 42 NVQAGTSALDVCCGTADWSIALAEAVGPEGHVIGLDFSENMLSVGRQKVKDAGLHNVELVHGNAMELPF---DDNSFDYV 118 (231)
T ss_pred CCCCCCEEEEeCCCcCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHhcCCCceEEEEechhcCCC---CCCCccEE
Confidence 5778899999999999999999998877789999999996655554444332 579999999876542 24689999
Q ss_pred EEeCC---ChhHHHHHHHHHhccCCCCcEEEEEE
Q 021911 218 FSDVA---QPDQARILALNASYFLKAGGHFVISI 248 (305)
Q Consensus 218 ~~d~~---~~~~~~~l~~~a~~~LkpGG~lv~s~ 248 (305)
+++.. .++..+++. ++.++|||||+|++.+
T Consensus 119 ~~~~~l~~~~~~~~~l~-~~~~~Lk~gG~l~~~~ 151 (231)
T TIGR02752 119 TIGFGLRNVPDYMQVLR-EMYRVVKPGGKVVCLE 151 (231)
T ss_pred EEecccccCCCHHHHHH-HHHHHcCcCeEEEEEE
Confidence 98765 455667777 9999999999999876
|
MenG is a generic term for a methyltransferase that catalyzes the last step in menaquinone biosynthesis; the exact enzymatic activity differs for different MenG because the menaquinone differ in their prenoid side chains in different species. Members of this MenG protein family are 2-heptaprenyl-1,4-naphthoquinone methyltransferase, and are found together in operons with the two subunits of the heptaprenyl diphosphate synthase in Bacillus subtilis and related species. |
| >COG2226 UbiE Methylase involved in ubiquinone/menaquinone biosynthesis [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.64 E-value=1.3e-15 Score=134.43 Aligned_cols=100 Identities=24% Similarity=0.386 Sum_probs=85.6
Q ss_pred CCCCCCEEEEEecCCCccHHHHHhhhCCCcEEEEEeCChHHHHHHHHHHHcC------CCeEEEEccCCCCcccccCCCc
Q 021911 140 WIKPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKR------TNVIPIIEDARHPAKYRMLVGM 213 (305)
Q Consensus 140 ~~~~g~~VLDlG~G~G~~t~~la~~~~~~~~V~avD~s~~~~~~l~~~a~~~------~nI~~~~~D~~~~~~~~~~~~~ 213 (305)
.+.++.+|||+|||||-.+..+++.++ .++|+++|+|+ .|++.++++ .+|+++++|+.+++ +.+++
T Consensus 48 ~~~~g~~vLDva~GTGd~a~~~~k~~g-~g~v~~~D~s~----~ML~~a~~k~~~~~~~~i~fv~~dAe~LP---f~D~s 119 (238)
T COG2226 48 GIKPGDKVLDVACGTGDMALLLAKSVG-TGEVVGLDISE----SMLEVAREKLKKKGVQNVEFVVGDAENLP---FPDNS 119 (238)
T ss_pred CCCCCCEEEEecCCccHHHHHHHHhcC-CceEEEEECCH----HHHHHHHHHhhccCccceEEEEechhhCC---CCCCc
Confidence 355899999999999999999999987 88999999999 666666554 34999999999987 34789
Q ss_pred EeEEEEeCC---ChhHHHHHHHHHhccCCCCcEEEEEE
Q 021911 214 VDVIFSDVA---QPDQARILALNASYFLKAGGHFVISI 248 (305)
Q Consensus 214 fD~V~~d~~---~~~~~~~l~~~a~~~LkpGG~lv~s~ 248 (305)
||+|.+... .++....|. +++|+|||||++++..
T Consensus 120 FD~vt~~fglrnv~d~~~aL~-E~~RVlKpgG~~~vle 156 (238)
T COG2226 120 FDAVTISFGLRNVTDIDKALK-EMYRVLKPGGRLLVLE 156 (238)
T ss_pred cCEEEeeehhhcCCCHHHHHH-HHHHhhcCCeEEEEEE
Confidence 999998776 567788888 9999999999988865
|
|
| >PF01209 Ubie_methyltran: ubiE/COQ5 methyltransferase family; InterPro: IPR004033 A number of methyltransferases have been shown to share regions of similarities [] | Back alignment and domain information |
|---|
Probab=99.62 E-value=2.7e-15 Score=133.12 Aligned_cols=105 Identities=28% Similarity=0.354 Sum_probs=73.6
Q ss_pred CCCCCCEEEEEecCCCccHHHHHhhhCCCcEEEEEeCChHHHHHHHHHHHcC--CCeEEEEccCCCCcccccCCCcEeEE
Q 021911 140 WIKPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKR--TNVIPIIEDARHPAKYRMLVGMVDVI 217 (305)
Q Consensus 140 ~~~~g~~VLDlG~G~G~~t~~la~~~~~~~~V~avD~s~~~~~~l~~~a~~~--~nI~~~~~D~~~~~~~~~~~~~fD~V 217 (305)
.+.++.+|||+|||||..+..+++.+++.++|+++|+|+.+++...+.++.. .+|+++++|+.+.+. .+++||+|
T Consensus 44 ~~~~g~~vLDv~~GtG~~~~~l~~~~~~~~~v~~vD~s~~ML~~a~~k~~~~~~~~i~~v~~da~~lp~---~d~sfD~v 120 (233)
T PF01209_consen 44 GLRPGDRVLDVACGTGDVTRELARRVGPNGKVVGVDISPGMLEVARKKLKREGLQNIEFVQGDAEDLPF---PDNSFDAV 120 (233)
T ss_dssp T--S--EEEEET-TTSHHHHHHGGGSS---EEEEEES-HHHHHHHHHHHHHTT--SEEEEE-BTTB--S----TT-EEEE
T ss_pred CCCCCCEEEEeCCChHHHHHHHHHHCCCccEEEEecCCHHHHHHHHHHHHhhCCCCeeEEEcCHHHhcC---CCCceeEE
Confidence 4678899999999999999999999888899999999994444443333332 589999999988763 36899999
Q ss_pred EEeCC---ChhHHHHHHHHHhccCCCCcEEEEEE
Q 021911 218 FSDVA---QPDQARILALNASYFLKAGGHFVISI 248 (305)
Q Consensus 218 ~~d~~---~~~~~~~l~~~a~~~LkpGG~lv~s~ 248 (305)
++... .+++.+.+. +++++|||||+|++..
T Consensus 121 ~~~fglrn~~d~~~~l~-E~~RVLkPGG~l~ile 153 (233)
T PF01209_consen 121 TCSFGLRNFPDRERALR-EMYRVLKPGGRLVILE 153 (233)
T ss_dssp EEES-GGG-SSHHHHHH-HHHHHEEEEEEEEEEE
T ss_pred EHHhhHHhhCCHHHHHH-HHHHHcCCCeEEEEee
Confidence 98775 567888887 9999999999999865
|
Apart from the ubiquinone/menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the ubiE gene of Escherichia coli), the ubiquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the COQ5 gene of Saccharomyces cerevisiae) and the menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the MENH gene of Bacillus subtilis), this family also includes methyltransferases involved in biotin and sterol biosynthesis and in phosphatidylethanolamine methylation.; GO: 0008168 methyltransferase activity; PDB: 1VL5_C. |
| >PLN02233 ubiquinone biosynthesis methyltransferase | Back alignment and domain information |
|---|
Probab=99.60 E-value=5.9e-14 Score=126.81 Aligned_cols=106 Identities=25% Similarity=0.172 Sum_probs=83.6
Q ss_pred CCCCCCEEEEEecCCCccHHHHHhhhCCCcEEEEEeCChHHHHHHHHHHHc-----CCCeEEEEccCCCCcccccCCCcE
Q 021911 140 WIKPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKK-----RTNVIPIIEDARHPAKYRMLVGMV 214 (305)
Q Consensus 140 ~~~~g~~VLDlG~G~G~~t~~la~~~~~~~~V~avD~s~~~~~~l~~~a~~-----~~nI~~~~~D~~~~~~~~~~~~~f 214 (305)
.+.++.+|||+|||+|.++..+++.+++.++|+++|+|+.+++.+.+.+.. .++|.+++.|+.+.+. ..++|
T Consensus 70 ~~~~~~~VLDlGcGtG~~~~~la~~~~~~~~V~gvD~S~~ml~~A~~r~~~~~~~~~~~i~~~~~d~~~lp~---~~~sf 146 (261)
T PLN02233 70 GAKMGDRVLDLCCGSGDLAFLLSEKVGSDGKVMGLDFSSEQLAVAASRQELKAKSCYKNIEWIEGDATDLPF---DDCYF 146 (261)
T ss_pred CCCCCCEEEEECCcCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhhhhccCCCeEEEEcccccCCC---CCCCE
Confidence 467789999999999999999998877778999999999544443322211 1479999999987642 35789
Q ss_pred eEEEEeCC---ChhHHHHHHHHHhccCCCCcEEEEEEc
Q 021911 215 DVIFSDVA---QPDQARILALNASYFLKAGGHFVISIK 249 (305)
Q Consensus 215 D~V~~d~~---~~~~~~~l~~~a~~~LkpGG~lv~s~~ 249 (305)
|+|++... .++..+++. +++++|||||+|++.+.
T Consensus 147 D~V~~~~~l~~~~d~~~~l~-ei~rvLkpGG~l~i~d~ 183 (261)
T PLN02233 147 DAITMGYGLRNVVDRLKAMQ-EMYRVLKPGSRVSILDF 183 (261)
T ss_pred eEEEEecccccCCCHHHHHH-HHHHHcCcCcEEEEEEC
Confidence 99998665 457777887 99999999999999863
|
|
| >PF12847 Methyltransf_18: Methyltransferase domain; PDB: 3G2Q_A 3G2O_A 3G2M_B 3G2P_B 3D2L_B 1IM8_B 3NJR_A 3E05_H 3EVZ_A 3HM2_A | Back alignment and domain information |
|---|
Probab=99.58 E-value=1.5e-14 Score=113.12 Aligned_cols=100 Identities=25% Similarity=0.389 Sum_probs=80.8
Q ss_pred CCCEEEEEecCCCccHHHHHhhhCCCcEEEEEeCChHHHHHHHHHHHcC---CCeEEEEccC-CCCcccccCCCcEeEEE
Q 021911 143 PGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKR---TNVIPIIEDA-RHPAKYRMLVGMVDVIF 218 (305)
Q Consensus 143 ~g~~VLDlG~G~G~~t~~la~~~~~~~~V~avD~s~~~~~~l~~~a~~~---~nI~~~~~D~-~~~~~~~~~~~~fD~V~ 218 (305)
|+.+|||||||+|.++..+++.. +..+|++||+|+.+++.+.+.+.+. ++|.+++.|+ .... ....||+|+
T Consensus 1 p~~~vLDlGcG~G~~~~~l~~~~-~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~----~~~~~D~v~ 75 (112)
T PF12847_consen 1 PGGRVLDLGCGTGRLSIALARLF-PGARVVGVDISPEMLEIARERAAEEGLSDRITFVQGDAEFDPD----FLEPFDLVI 75 (112)
T ss_dssp TTCEEEEETTTTSHHHHHHHHHH-TTSEEEEEESSHHHHHHHHHHHHHTTTTTTEEEEESCCHGGTT----TSSCEEEEE
T ss_pred CCCEEEEEcCcCCHHHHHHHhcC-CCCEEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEECccccCcc----cCCCCCEEE
Confidence 57899999999999999999954 5679999999998877777777332 7999999999 2222 246799999
Q ss_pred EeC-C----C--hhHHHHHHHHHhccCCCCcEEEEEE
Q 021911 219 SDV-A----Q--PDQARILALNASYFLKAGGHFVISI 248 (305)
Q Consensus 219 ~d~-~----~--~~~~~~l~~~a~~~LkpGG~lv~s~ 248 (305)
++. . . +++.+++. ++.+.|+|||+|++.+
T Consensus 76 ~~~~~~~~~~~~~~~~~~l~-~~~~~L~pgG~lvi~~ 111 (112)
T PF12847_consen 76 CSGFTLHFLLPLDERRRVLE-RIRRLLKPGGRLVINT 111 (112)
T ss_dssp ECSGSGGGCCHHHHHHHHHH-HHHHHEEEEEEEEEEE
T ss_pred ECCCccccccchhHHHHHHH-HHHHhcCCCcEEEEEE
Confidence 987 2 2 24556666 9999999999999986
|
... |
| >COG4123 Predicted O-methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.58 E-value=8.1e-14 Score=123.27 Aligned_cols=143 Identities=16% Similarity=0.180 Sum_probs=107.1
Q ss_pred CCCCCCEEEEEecCCCccHHHHHhhhCCCcEEEEEeCChHHHHHHHHHHHcC---CCeEEEEccCCCCcccccCCCcEeE
Q 021911 140 WIKPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKR---TNVIPIIEDARHPAKYRMLVGMVDV 216 (305)
Q Consensus 140 ~~~~g~~VLDlG~G~G~~t~~la~~~~~~~~V~avD~s~~~~~~l~~~a~~~---~nI~~~~~D~~~~~~~~~~~~~fD~ 216 (305)
.+....+|||||||+|..++.+|.+.. ...|++||+++++...+.+..+.+ .+|++++.|+.+..+.. ...+||+
T Consensus 41 ~~~~~~~IlDlGaG~G~l~L~la~r~~-~a~I~~VEiq~~~a~~A~~nv~ln~l~~ri~v~~~Di~~~~~~~-~~~~fD~ 118 (248)
T COG4123 41 PVPKKGRILDLGAGNGALGLLLAQRTE-KAKIVGVEIQEEAAEMAQRNVALNPLEERIQVIEADIKEFLKAL-VFASFDL 118 (248)
T ss_pred ccccCCeEEEecCCcCHHHHHHhccCC-CCcEEEEEeCHHHHHHHHHHHHhCcchhceeEehhhHHHhhhcc-cccccCE
Confidence 455589999999999999999999964 489999999995544444443333 68999999998876542 2347999
Q ss_pred EEEeCCC--------h-------------hHHHHHHHHHhccCCCCcEEEEEEcccccCCCCchhhhHHHHHHHHHHCCC
Q 021911 217 IFSDVAQ--------P-------------DQARILALNASYFLKAGGHFVISIKANCIDSTVPAEAVFQSEVKKLQQDQF 275 (305)
Q Consensus 217 V~~d~~~--------~-------------~~~~~l~~~a~~~LkpGG~lv~s~~~~~i~~~~~~~~v~~~~~~~l~~~Gf 275 (305)
|+||+|. + +...++. .+.++|||+|+|++.. +...+.+.++.|++.+|
T Consensus 119 Ii~NPPyf~~~~~~~~~~~~~~Ar~e~~~~le~~i~-~a~~~lk~~G~l~~V~----------r~erl~ei~~~l~~~~~ 187 (248)
T COG4123 119 IICNPPYFKQGSRLNENPLRAIARHEITLDLEDLIR-AAAKLLKPGGRLAFVH----------RPERLAEIIELLKSYNL 187 (248)
T ss_pred EEeCCCCCCCccccCcChhhhhhhhhhcCCHHHHHH-HHHHHccCCCEEEEEe----------cHHHHHHHHHHHHhcCC
Confidence 9999991 1 2334444 7899999999999998 33445666788888899
Q ss_pred cEeEEeecCCCC--CceEEEEE
Q 021911 276 KPFEQVTLEPFE--RDHACVVG 295 (305)
Q Consensus 276 ~~~e~~~l~p~~--~~~~~vv~ 295 (305)
.+.++..+.|.. ..+.+++-
T Consensus 188 ~~k~i~~V~p~~~k~A~~vLv~ 209 (248)
T COG4123 188 EPKRIQFVYPKIGKAANRVLVE 209 (248)
T ss_pred CceEEEEecCCCCCcceEEEEE
Confidence 999988877754 34444443
|
|
| >PRK00107 gidB 16S rRNA methyltransferase GidB; Reviewed | Back alignment and domain information |
|---|
Probab=99.56 E-value=2.2e-13 Score=116.90 Aligned_cols=138 Identities=20% Similarity=0.169 Sum_probs=97.7
Q ss_pred CCCCCEEEEEecCCCccHHHHHhhhCCCcEEEEEeCChHHHHHHHHHHHcC--CCeEEEEccCCCCcccccCCCcEeEEE
Q 021911 141 IKPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKR--TNVIPIIEDARHPAKYRMLVGMVDVIF 218 (305)
Q Consensus 141 ~~~g~~VLDlG~G~G~~t~~la~~~~~~~~V~avD~s~~~~~~l~~~a~~~--~nI~~~~~D~~~~~~~~~~~~~fD~V~ 218 (305)
++++.+|||+|||+|..+..++... +.++|+++|+|+.++..+.+.+++. +++++++.|+.+... ..+||+|+
T Consensus 43 l~~g~~VLDiGcGtG~~al~la~~~-~~~~V~giD~s~~~l~~A~~~~~~~~l~~i~~~~~d~~~~~~----~~~fDlV~ 117 (187)
T PRK00107 43 LPGGERVLDVGSGAGFPGIPLAIAR-PELKVTLVDSLGKKIAFLREVAAELGLKNVTVVHGRAEEFGQ----EEKFDVVT 117 (187)
T ss_pred cCCCCeEEEEcCCCCHHHHHHHHHC-CCCeEEEEeCcHHHHHHHHHHHHHcCCCCEEEEeccHhhCCC----CCCccEEE
Confidence 4458999999999999999999864 5789999999996665555555444 569999999977542 46899999
Q ss_pred EeCCChhHHHHHHHHHhccCCCCcEEEEEEcccccCCCCchhhhHHHHHHHH-HHCCCcEeEEeec--CCCCCceEEEEE
Q 021911 219 SDVAQPDQARILALNASYFLKAGGHFVISIKANCIDSTVPAEAVFQSEVKKL-QQDQFKPFEQVTL--EPFERDHACVVG 295 (305)
Q Consensus 219 ~d~~~~~~~~~l~~~a~~~LkpGG~lv~s~~~~~i~~~~~~~~v~~~~~~~l-~~~Gf~~~e~~~l--~p~~~~~~~vv~ 295 (305)
++.. .+...++. .+.++|||||+|++.... . +..++..+ +++|+.+.+++.+ +-......++|-
T Consensus 118 ~~~~-~~~~~~l~-~~~~~LkpGG~lv~~~~~-------~----~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 184 (187)
T PRK00107 118 SRAV-ASLSDLVE-LCLPLLKPGGRFLALKGR-------D----PEEEIAELPKALGGKVEEVIELTLPGLDGERHLVII 184 (187)
T ss_pred Eccc-cCHHHHHH-HHHHhcCCCeEEEEEeCC-------C----hHHHHHHHHHhcCceEeeeEEEecCCCCCcEEEEEE
Confidence 9753 33445555 899999999999998621 1 12223333 5679998887644 444444444444
Q ss_pred E
Q 021911 296 G 296 (305)
Q Consensus 296 ~ 296 (305)
+
T Consensus 185 ~ 185 (187)
T PRK00107 185 R 185 (187)
T ss_pred e
Confidence 3
|
|
| >PTZ00098 phosphoethanolamine N-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.56 E-value=1.3e-13 Score=124.74 Aligned_cols=142 Identities=14% Similarity=0.146 Sum_probs=98.9
Q ss_pred cCCCCCCEEEEEecCCCccHHHHHhhhCCCcEEEEEeCChHHHHHHHHHHHcCCCeEEEEccCCCCcccccCCCcEeEEE
Q 021911 139 IWIKPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKRTNVIPIIEDARHPAKYRMLVGMVDVIF 218 (305)
Q Consensus 139 ~~~~~g~~VLDlG~G~G~~t~~la~~~~~~~~V~avD~s~~~~~~l~~~a~~~~nI~~~~~D~~~~~~~~~~~~~fD~V~ 218 (305)
+.+.++.+|||+|||+|..+..++... .++|+++|+|+.++..+.+.+....+|.+++.|+...+ ....+||+|+
T Consensus 48 l~l~~~~~VLDiGcG~G~~a~~la~~~--~~~v~giD~s~~~~~~a~~~~~~~~~i~~~~~D~~~~~---~~~~~FD~V~ 122 (263)
T PTZ00098 48 IELNENSKVLDIGSGLGGGCKYINEKY--GAHVHGVDICEKMVNIAKLRNSDKNKIEFEANDILKKD---FPENTFDMIY 122 (263)
T ss_pred CCCCCCCEEEEEcCCCChhhHHHHhhc--CCEEEEEECCHHHHHHHHHHcCcCCceEEEECCcccCC---CCCCCeEEEE
Confidence 367899999999999999999998764 46999999999554444443333357999999987543 2246899999
Q ss_pred EeCC---C--hhHHHHHHHHHhccCCCCcEEEEEEcccccCCCCchhh------------hHHHHHHHHHHCCCcEeEEe
Q 021911 219 SDVA---Q--PDQARILALNASYFLKAGGHFVISIKANCIDSTVPAEA------------VFQSEVKKLQQDQFKPFEQV 281 (305)
Q Consensus 219 ~d~~---~--~~~~~~l~~~a~~~LkpGG~lv~s~~~~~i~~~~~~~~------------v~~~~~~~l~~~Gf~~~e~~ 281 (305)
+... . .+...++. +++++|||||+|+++.............. -.....+.|+++||+.++..
T Consensus 123 s~~~l~h~~~~d~~~~l~-~i~r~LkPGG~lvi~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGF~~v~~~ 201 (263)
T PTZ00098 123 SRDAILHLSYADKKKLFE-KCYKWLKPNGILLITDYCADKIENWDEEFKAYIKKRKYTLIPIQEYGDLIKSCNFQNVVAK 201 (263)
T ss_pred EhhhHHhCCHHHHHHHHH-HHHHHcCCCcEEEEEEeccccccCcHHHHHHHHHhcCCCCCCHHHHHHHHHHCCCCeeeEE
Confidence 8432 1 25666776 99999999999999863211111111100 01223466789999999988
Q ss_pred ecCCC
Q 021911 282 TLEPF 286 (305)
Q Consensus 282 ~l~p~ 286 (305)
++.++
T Consensus 202 d~~~~ 206 (263)
T PTZ00098 202 DISDY 206 (263)
T ss_pred eCcHH
Confidence 77665
|
|
| >PF08704 GCD14: tRNA methyltransferase complex GCD14 subunit; InterPro: IPR014816 GCD14 is a subunit of the tRNA methyltransferase complex and is required for 1-methyladenosine modification and maturation of initiator methionyl-tRNA [] | Back alignment and domain information |
|---|
Probab=99.56 E-value=7.9e-14 Score=124.16 Aligned_cols=132 Identities=30% Similarity=0.439 Sum_probs=98.6
Q ss_pred CCCCCCEEEEEecCCCccHHHHHhhhCCCcEEEEEeCChHHHHHHHHHHHcC---CCeEEEEccCCCCcccccCCCcEeE
Q 021911 140 WIKPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKR---TNVIPIIEDARHPAKYRMLVGMVDV 216 (305)
Q Consensus 140 ~~~~g~~VLDlG~G~G~~t~~la~~~~~~~~V~avD~s~~~~~~l~~~a~~~---~nI~~~~~D~~~~~~~~~~~~~fD~ 216 (305)
++.||++|||.|+|+|.+|..||..+++.+.|+.+|+.+.+.+.+.++.+.. .||.+.+.|+............||.
T Consensus 37 ~i~pG~~VlEaGtGSG~lt~~l~r~v~p~G~v~t~E~~~~~~~~A~~n~~~~gl~~~v~~~~~Dv~~~g~~~~~~~~~Da 116 (247)
T PF08704_consen 37 DIRPGSRVLEAGTGSGSLTHALARAVGPTGHVYTYEFREDRAEKARKNFERHGLDDNVTVHHRDVCEEGFDEELESDFDA 116 (247)
T ss_dssp T--TT-EEEEE--TTSHHHHHHHHHHTTTSEEEEEESSHHHHHHHHHHHHHTTCCTTEEEEES-GGCG--STT-TTSEEE
T ss_pred CCCCCCEEEEecCCcHHHHHHHHHHhCCCeEEEccccCHHHHHHHHHHHHHcCCCCCceeEecceecccccccccCcccE
Confidence 7999999999999999999999999999999999999997777666666554 5899999999653221112468999
Q ss_pred EEEeCCChhHHHHHHHHHhccC-CCCcEEEEEEcccccCCCCchhhhHHHHHHHHHHCCCcEeEEeec
Q 021911 217 IFSDVAQPDQARILALNASYFL-KAGGHFVISIKANCIDSTVPAEAVFQSEVKKLQQDQFKPFEQVTL 283 (305)
Q Consensus 217 V~~d~~~~~~~~~l~~~a~~~L-kpGG~lv~s~~~~~i~~~~~~~~v~~~~~~~l~~~Gf~~~e~~~l 283 (305)
||+|+|.|+.. +. ++.+.| |+||+|++.. .| .+.+ .+.++.|++.||..++++++
T Consensus 117 vfLDlp~Pw~~--i~-~~~~~L~~~gG~i~~fs--P~------ieQv-~~~~~~L~~~gf~~i~~~Ev 172 (247)
T PF08704_consen 117 VFLDLPDPWEA--IP-HAKRALKKPGGRICCFS--PC------IEQV-QKTVEALREHGFTDIETVEV 172 (247)
T ss_dssp EEEESSSGGGG--HH-HHHHHE-EEEEEEEEEE--SS------HHHH-HHHHHHHHHTTEEEEEEEEE
T ss_pred EEEeCCCHHHH--HH-HHHHHHhcCCceEEEEC--CC------HHHH-HHHHHHHHHCCCeeeEEEEE
Confidence 99999999865 44 788999 8999998887 34 2222 45578888899988776653
|
; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity, 0030488 tRNA methylation; PDB: 2YVL_C 1YB2_A 2B25_B 1O54_A 2PWY_B 1I9G_A 3LGA_B 3LHD_C 3MB5_A. |
| >PLN02244 tocopherol O-methyltransferase | Back alignment and domain information |
|---|
Probab=99.55 E-value=1.5e-13 Score=128.79 Aligned_cols=139 Identities=14% Similarity=0.190 Sum_probs=99.8
Q ss_pred CCCCEEEEEecCCCccHHHHHhhhCCCcEEEEEeCChHHHHHHHHHHHcC---CCeEEEEccCCCCcccccCCCcEeEEE
Q 021911 142 KPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKR---TNVIPIIEDARHPAKYRMLVGMVDVIF 218 (305)
Q Consensus 142 ~~g~~VLDlG~G~G~~t~~la~~~~~~~~V~avD~s~~~~~~l~~~a~~~---~nI~~~~~D~~~~~~~~~~~~~fD~V~ 218 (305)
.++.+|||||||+|.++.++++.+ ..+|++||+|+.++..+.+.+++. ++|.+++.|+.+.+. ..++||+|+
T Consensus 117 ~~~~~VLDiGCG~G~~~~~La~~~--g~~v~gvD~s~~~i~~a~~~~~~~g~~~~v~~~~~D~~~~~~---~~~~FD~V~ 191 (340)
T PLN02244 117 KRPKRIVDVGCGIGGSSRYLARKY--GANVKGITLSPVQAARANALAAAQGLSDKVSFQVADALNQPF---EDGQFDLVW 191 (340)
T ss_pred CCCCeEEEecCCCCHHHHHHHHhc--CCEEEEEECCHHHHHHHHHHHHhcCCCCceEEEEcCcccCCC---CCCCccEEE
Confidence 678899999999999999999985 369999999996666555555443 479999999977542 357999999
Q ss_pred EeCC---ChhHHHHHHHHHhccCCCCcEEEEEEcccc-cCCC---Cchh--hh---------------HHHHHHHHHHCC
Q 021911 219 SDVA---QPDQARILALNASYFLKAGGHFVISIKANC-IDST---VPAE--AV---------------FQSEVKKLQQDQ 274 (305)
Q Consensus 219 ~d~~---~~~~~~~l~~~a~~~LkpGG~lv~s~~~~~-i~~~---~~~~--~v---------------~~~~~~~l~~~G 274 (305)
+... .++..+.+. +++++|||||+|++++.... .... .... .+ ..+..+.+++.|
T Consensus 192 s~~~~~h~~d~~~~l~-e~~rvLkpGG~lvi~~~~~~~~~~~~~~l~~~~~~~~~~i~~~~~~p~~~s~~~~~~~l~~aG 270 (340)
T PLN02244 192 SMESGEHMPDKRKFVQ-ELARVAAPGGRIIIVTWCHRDLEPGETSLKPDEQKLLDKICAAYYLPAWCSTSDYVKLAESLG 270 (340)
T ss_pred ECCchhccCCHHHHHH-HHHHHcCCCcEEEEEEecccccccccccCCHHHHHHHHHHHhhccCCCCCCHHHHHHHHHHCC
Confidence 8655 456777777 99999999999999873111 1111 0000 00 112245668999
Q ss_pred CcEeEEeecCCC
Q 021911 275 FKPFEQVTLEPF 286 (305)
Q Consensus 275 f~~~e~~~l~p~ 286 (305)
|+.++..++..+
T Consensus 271 f~~v~~~d~s~~ 282 (340)
T PLN02244 271 LQDIKTEDWSEH 282 (340)
T ss_pred CCeeEeeeCcHH
Confidence 999888766543
|
|
| >TIGR00138 gidB 16S rRNA methyltransferase GidB | Back alignment and domain information |
|---|
Probab=99.55 E-value=2.3e-13 Score=116.36 Aligned_cols=127 Identities=20% Similarity=0.164 Sum_probs=91.2
Q ss_pred CCCEEEEEecCCCccHHHHHhhhCCCcEEEEEeCChHHHHHHHHHHHcC--CCeEEEEccCCCCcccccCCCcEeEEEEe
Q 021911 143 PGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKR--TNVIPIIEDARHPAKYRMLVGMVDVIFSD 220 (305)
Q Consensus 143 ~g~~VLDlG~G~G~~t~~la~~~~~~~~V~avD~s~~~~~~l~~~a~~~--~nI~~~~~D~~~~~~~~~~~~~fD~V~~d 220 (305)
++.+|||+|||+|..+..++.. .+.++|++||+|+.++..+.+.+++. +||++++.|+.+.. ...+||+|+++
T Consensus 42 ~~~~vLDiGcGtG~~s~~la~~-~~~~~V~~iD~s~~~~~~a~~~~~~~~~~~i~~i~~d~~~~~----~~~~fD~I~s~ 116 (181)
T TIGR00138 42 DGKKVIDIGSGAGFPGIPLAIA-RPELKLTLLESNHKKVAFLREVKAELGLNNVEIVNGRAEDFQ----HEEQFDVITSR 116 (181)
T ss_pred CCCeEEEecCCCCccHHHHHHH-CCCCeEEEEeCcHHHHHHHHHHHHHhCCCCeEEEecchhhcc----ccCCccEEEeh
Confidence 3789999999999999999865 35679999999996655544444433 57999999997752 24689999998
Q ss_pred CCChhHHHHHHHHHhccCCCCcEEEEEEcccccCCCCchhhhHHHHHHHHHHCCCcEeEEeec
Q 021911 221 VAQPDQARILALNASYFLKAGGHFVISIKANCIDSTVPAEAVFQSEVKKLQQDQFKPFEQVTL 283 (305)
Q Consensus 221 ~~~~~~~~~l~~~a~~~LkpGG~lv~s~~~~~i~~~~~~~~v~~~~~~~l~~~Gf~~~e~~~l 283 (305)
. ..+...++. .+.++|+|||.+++... .. .........+.+...||++++.-.+
T Consensus 117 ~-~~~~~~~~~-~~~~~LkpgG~lvi~~~------~~-~~~~~~~~~e~~~~~~~~~~~~~~~ 170 (181)
T TIGR00138 117 A-LASLNVLLE-LTLNLLKVGGYFLAYKG------KK-YLDEIEEAKRKCQVLGVEPLEVPPL 170 (181)
T ss_pred h-hhCHHHHHH-HHHHhcCCCCEEEEEcC------CC-cHHHHHHHHHhhhhcCceEeecccc
Confidence 7 444555665 78999999999998751 11 1222222235555679998876543
|
GidB (glucose-inhibited division protein B) appears to be present and in a single copy in nearly all complete eubacterial genomes. It is missing only from some obligate intracellular species of various lineages (Chlamydiae, Ehrlichia, Wolbachia, Anaplasma, Buchnera, etc.). GidB shows a methytransferase fold in its the crystal structure, and acts as a 7-methylguanosine (m(7)G) methyltransferase, apparently specific to 16S rRNA. |
| >PF05175 MTS: Methyltransferase small domain; InterPro: IPR007848 This domain is found in ribosomal RNA small subunit methyltransferase C and in other methyltransferases | Back alignment and domain information |
|---|
Probab=99.54 E-value=4.2e-14 Score=119.70 Aligned_cols=102 Identities=25% Similarity=0.296 Sum_probs=79.0
Q ss_pred CCCCCEEEEEecCCCccHHHHHhhhCCCcEEEEEeCChHHHHHHHHHHHcC--CCeEEEEccCCCCcccccCCCcEeEEE
Q 021911 141 IKPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKR--TNVIPIIEDARHPAKYRMLVGMVDVIF 218 (305)
Q Consensus 141 ~~~g~~VLDlG~G~G~~t~~la~~~~~~~~V~avD~s~~~~~~l~~~a~~~--~nI~~~~~D~~~~~~~~~~~~~fD~V~ 218 (305)
..+..+|||+|||+|..+..++... +..+|+++|+|+.++..+.++++.+ .+++++..|+.+..+ ..+||+|+
T Consensus 29 ~~~~~~vLDlG~G~G~i~~~la~~~-~~~~v~~vDi~~~a~~~a~~n~~~n~~~~v~~~~~d~~~~~~----~~~fD~Iv 103 (170)
T PF05175_consen 29 KHKGGRVLDLGCGSGVISLALAKRG-PDAKVTAVDINPDALELAKRNAERNGLENVEVVQSDLFEALP----DGKFDLIV 103 (170)
T ss_dssp HHTTCEEEEETSTTSHHHHHHHHTS-TCEEEEEEESBHHHHHHHHHHHHHTTCTTEEEEESSTTTTCC----TTCEEEEE
T ss_pred hccCCeEEEecCChHHHHHHHHHhC-CCCEEEEEcCCHHHHHHHHHHHHhcCcccccccccccccccc----ccceeEEE
Confidence 3377899999999999999999875 6668999999997776666666555 348999999876542 47999999
Q ss_pred EeCCCh--------hHHHHHHHHHhccCCCCcEEEEEE
Q 021911 219 SDVAQP--------DQARILALNASYFLKAGGHFVISI 248 (305)
Q Consensus 219 ~d~~~~--------~~~~~l~~~a~~~LkpGG~lv~s~ 248 (305)
+|+|.. ...+++. .+.++|||+|.|++..
T Consensus 104 ~NPP~~~~~~~~~~~~~~~i~-~a~~~Lk~~G~l~lv~ 140 (170)
T PF05175_consen 104 SNPPFHAGGDDGLDLLRDFIE-QARRYLKPGGRLFLVI 140 (170)
T ss_dssp E---SBTTSHCHHHHHHHHHH-HHHHHEEEEEEEEEEE
T ss_pred EccchhcccccchhhHHHHHH-HHHHhccCCCEEEEEe
Confidence 999932 2455565 8999999999998876
|
; GO: 0008168 methyltransferase activity; PDB: 1WY7_A 1DUS_A 2OZV_A 2PJD_A 1VQ1_A 1NV9_A 1SG9_C 1NV8_A 3Q87_B 3DMF_A .... |
| >KOG2198 consensus tRNA cytosine-5-methylases and related enzymes of the NOL1/NOP2/sun superfamily [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.54 E-value=6.3e-14 Score=128.77 Aligned_cols=127 Identities=26% Similarity=0.293 Sum_probs=97.6
Q ss_pred CCCCCCEEEEEecCCCccHHHHHhhhCC---CcEEEEEeCChHHHHHHHHHHHcC--CCeEEEEccCCCCcccc------
Q 021911 140 WIKPGARVLYLGAASGTTVSHVSDIVGP---NGVVYAVEFSHRSGRDLVNMAKKR--TNVIPIIEDARHPAKYR------ 208 (305)
Q Consensus 140 ~~~~g~~VLDlG~G~G~~t~~la~~~~~---~~~V~avD~s~~~~~~l~~~a~~~--~nI~~~~~D~~~~~~~~------ 208 (305)
.++|+++|||+||+||.+|..+.+.+.. .+.|+|-|+++.++..++..++.. +++.....|+...+...
T Consensus 152 ~v~p~~~VLDmCAAPG~Kt~qLLeal~~~~~~g~vvaND~d~~R~~~L~~q~~~l~~~~~~v~~~~~~~~p~~~~~~~~~ 231 (375)
T KOG2198|consen 152 GVKPGDKVLDMCAAPGGKTAQLLEALHKDPTRGYVVANDVDPKRLNMLVHQLKRLPSPNLLVTNHDASLFPNIYLKDGND 231 (375)
T ss_pred ccCCCCeeeeeccCCCccHHHHHHHHhcCCCCCeeEecccCHHHHHHHHHHHhccCCcceeeecccceeccccccccCch
Confidence 6899999999999999999999887642 348999999998888888887433 56666666665544321
Q ss_pred cCCCcEeEEEEeCCC--------------------------hhHHHHHHHHHhccCCCCcEEEEEEcccccCCCCchhhh
Q 021911 209 MLVGMVDVIFSDVAQ--------------------------PDQARILALNASYFLKAGGHFVISIKANCIDSTVPAEAV 262 (305)
Q Consensus 209 ~~~~~fD~V~~d~~~--------------------------~~~~~~l~~~a~~~LkpGG~lv~s~~~~~i~~~~~~~~v 262 (305)
....+||.|++|+|| ..|.+|+. +..++||+||+||||| |++...+++.++
T Consensus 232 ~~~~~fDrVLvDVPCS~Dgt~rk~~~i~~~~w~~~~~~~L~~LQ~~iL~-rgl~lLk~GG~lVYST--CSLnpieNEaVV 308 (375)
T KOG2198|consen 232 KEQLKFDRVLVDVPCSGDGTLRKNPNIWKEGWKTQRALGLHALQLRILR-RGLRLLKVGGRLVYST--CSLNPIENEAVV 308 (375)
T ss_pred hhhhhcceeEEecccCCCcccccCchHhhhhhhhhhccCChHHHHHHHH-HHHHHhcCCCEEEEec--cCCCchhhHHHH
Confidence 134589999999994 25889998 9999999999999999 666666655544
Q ss_pred HHHHHHHH
Q 021911 263 FQSEVKKL 270 (305)
Q Consensus 263 ~~~~~~~l 270 (305)
...++.+
T Consensus 309 -~~~L~~~ 315 (375)
T KOG2198|consen 309 -QEALQKV 315 (375)
T ss_pred -HHHHHHh
Confidence 5555544
|
|
| >PRK00377 cbiT cobalt-precorrin-6Y C(15)-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.54 E-value=2.8e-13 Score=117.40 Aligned_cols=127 Identities=22% Similarity=0.283 Sum_probs=96.2
Q ss_pred cCCCCCCEEEEEecCCCccHHHHHhhhCCCcEEEEEeCChHHHHHHHHHHHcC---CCeEEEEccCCCCcccccCCCcEe
Q 021911 139 IWIKPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKR---TNVIPIIEDARHPAKYRMLVGMVD 215 (305)
Q Consensus 139 ~~~~~g~~VLDlG~G~G~~t~~la~~~~~~~~V~avD~s~~~~~~l~~~a~~~---~nI~~~~~D~~~~~~~~~~~~~fD 215 (305)
+.+.++.+|||+|||+|.++..++..+++.++|+++|+++.+++.+.+.++.. .++.++..|+.+.... ....||
T Consensus 36 l~~~~~~~vlDlG~GtG~~s~~~a~~~~~~~~v~avD~~~~~~~~a~~n~~~~g~~~~v~~~~~d~~~~l~~--~~~~~D 113 (198)
T PRK00377 36 LRLRKGDMILDIGCGTGSVTVEASLLVGETGKVYAVDKDEKAINLTRRNAEKFGVLNNIVLIKGEAPEILFT--INEKFD 113 (198)
T ss_pred cCCCCcCEEEEeCCcCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHhCCCCCeEEEEechhhhHhh--cCCCCC
Confidence 36788999999999999999999988766779999999997666555555443 4788888888654321 236899
Q ss_pred EEEEeCCChhHHHHHHHHHhccCCCCcEEEEEEcccccCCCCchhhhHHHHHHHHHHCCCcE
Q 021911 216 VIFSDVAQPDQARILALNASYFLKAGGHFVISIKANCIDSTVPAEAVFQSEVKKLQQDQFKP 277 (305)
Q Consensus 216 ~V~~d~~~~~~~~~l~~~a~~~LkpGG~lv~s~~~~~i~~~~~~~~v~~~~~~~l~~~Gf~~ 277 (305)
+|+++....+...++. .+.++|||+|+|++.+ +. ...+.+....|++.||..
T Consensus 114 ~V~~~~~~~~~~~~l~-~~~~~LkpgG~lv~~~--~~-------~~~~~~~~~~l~~~g~~~ 165 (198)
T PRK00377 114 RIFIGGGSEKLKEIIS-ASWEIIKKGGRIVIDA--IL-------LETVNNALSALENIGFNL 165 (198)
T ss_pred EEEECCCcccHHHHHH-HHHHHcCCCcEEEEEe--ec-------HHHHHHHHHHHHHcCCCe
Confidence 9999877667777787 9999999999999865 11 112344456777888853
|
|
| >PF13847 Methyltransf_31: Methyltransferase domain; PDB: 3T0I_B 3SVZ_B 3SXJ_A 3F4K_A 3GU3_B 2GH1_A 1R8Y_E 1R8X_B 2B3T_A 1T43_A | Back alignment and domain information |
|---|
Probab=99.54 E-value=1.1e-13 Score=114.81 Aligned_cols=104 Identities=26% Similarity=0.350 Sum_probs=84.4
Q ss_pred CCCCEEEEEecCCCccHHHHHhhhCCCcEEEEEeCChHHHHHHHHHHHcC--CCeEEEEccCCCCcccccCCCcEeEEEE
Q 021911 142 KPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKR--TNVIPIIEDARHPAKYRMLVGMVDVIFS 219 (305)
Q Consensus 142 ~~g~~VLDlG~G~G~~t~~la~~~~~~~~V~avD~s~~~~~~l~~~a~~~--~nI~~~~~D~~~~~~~~~~~~~fD~V~~ 219 (305)
+.+.+|||+|||+|.++..+++.+.+..+|++||+|+.++..+.+.+++. +|+++++.|+.+.+.. ...+||+|++
T Consensus 2 ~~~~~iLDlGcG~G~~~~~l~~~~~~~~~i~gvD~s~~~i~~a~~~~~~~~~~ni~~~~~d~~~l~~~--~~~~~D~I~~ 79 (152)
T PF13847_consen 2 KSNKKILDLGCGTGRLLIQLAKELNPGAKIIGVDISEEMIEYAKKRAKELGLDNIEFIQGDIEDLPQE--LEEKFDIIIS 79 (152)
T ss_dssp TTTSEEEEET-TTSHHHHHHHHHSTTTSEEEEEESSHHHHHHHHHHHHHTTSTTEEEEESBTTCGCGC--SSTTEEEEEE
T ss_pred CCCCEEEEecCcCcHHHHHHHHhcCCCCEEEEEECcHHHHHHhhcccccccccccceEEeehhccccc--cCCCeeEEEE
Confidence 45789999999999999999976667789999999997666666655543 6899999999985432 1279999999
Q ss_pred eCC---ChhHHHHHHHHHhccCCCCcEEEEEE
Q 021911 220 DVA---QPDQARILALNASYFLKAGGHFVISI 248 (305)
Q Consensus 220 d~~---~~~~~~~l~~~a~~~LkpGG~lv~s~ 248 (305)
+.+ .++...++. ++.++||++|.++++.
T Consensus 80 ~~~l~~~~~~~~~l~-~~~~~lk~~G~~i~~~ 110 (152)
T PF13847_consen 80 NGVLHHFPDPEKVLK-NIIRLLKPGGILIISD 110 (152)
T ss_dssp ESTGGGTSHHHHHHH-HHHHHEEEEEEEEEEE
T ss_pred cCchhhccCHHHHHH-HHHHHcCCCcEEEEEE
Confidence 876 456667777 9999999999999987
|
... |
| >PRK00121 trmB tRNA (guanine-N(7)-)-methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.53 E-value=9e-14 Score=120.93 Aligned_cols=125 Identities=18% Similarity=0.157 Sum_probs=94.4
Q ss_pred CCCCEEEEEecCCCccHHHHHhhhCCCcEEEEEeCChHHHHHHHHHHHcC--CCeEEEEccC-CCCcccccCCCcEeEEE
Q 021911 142 KPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKR--TNVIPIIEDA-RHPAKYRMLVGMVDVIF 218 (305)
Q Consensus 142 ~~g~~VLDlG~G~G~~t~~la~~~~~~~~V~avD~s~~~~~~l~~~a~~~--~nI~~~~~D~-~~~~~~~~~~~~fD~V~ 218 (305)
.++.+|||+|||+|..+..+++.+ +..+|++||+|+.++..+.+.++.. +|+.+++.|+ ...+.. ....+||+|+
T Consensus 39 ~~~~~VLDiGcGtG~~~~~la~~~-p~~~v~gVD~s~~~i~~a~~~~~~~~~~~v~~~~~d~~~~l~~~-~~~~~~D~V~ 116 (202)
T PRK00121 39 NDAPIHLEIGFGKGEFLVEMAKAN-PDINFIGIEVHEPGVGKALKKIEEEGLTNLRLLCGDAVEVLLDM-FPDGSLDRIY 116 (202)
T ss_pred CCCCeEEEEccCCCHHHHHHHHHC-CCccEEEEEechHHHHHHHHHHHHcCCCCEEEEecCHHHHHHHH-cCccccceEE
Confidence 367899999999999999999875 5678999999997766666555443 6899999998 443311 2346899999
Q ss_pred EeCCChh-----------HHHHHHHHHhccCCCCcEEEEEEcccccCCCCchhhhHHHHHHHHHHCCCcEe
Q 021911 219 SDVAQPD-----------QARILALNASYFLKAGGHFVISIKANCIDSTVPAEAVFQSEVKKLQQDQFKPF 278 (305)
Q Consensus 219 ~d~~~~~-----------~~~~l~~~a~~~LkpGG~lv~s~~~~~i~~~~~~~~v~~~~~~~l~~~Gf~~~ 278 (305)
++.+.+. +..++. +++++|||+|.|++++ +....+...++.+++.|+...
T Consensus 117 ~~~~~p~~~~~~~~~~~~~~~~l~-~i~~~LkpgG~l~i~~---------~~~~~~~~~~~~~~~~g~~~~ 177 (202)
T PRK00121 117 LNFPDPWPKKRHHKRRLVQPEFLA-LYARKLKPGGEIHFAT---------DWEGYAEYMLEVLSAEGGFLV 177 (202)
T ss_pred EECCCCCCCccccccccCCHHHHH-HHHHHcCCCCEEEEEc---------CCHHHHHHHHHHHHhCccccc
Confidence 9876432 355666 9999999999999987 233445556677788887665
|
|
| >PRK08287 cobalt-precorrin-6Y C(15)-methyltransferase; Validated | Back alignment and domain information |
|---|
Probab=99.52 E-value=5.4e-13 Score=114.49 Aligned_cols=125 Identities=18% Similarity=0.198 Sum_probs=92.2
Q ss_pred CCCCCCEEEEEecCCCccHHHHHhhhCCCcEEEEEeCChHHHHHHHHHHHcC--CCeEEEEccCCCCcccccCCCcEeEE
Q 021911 140 WIKPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKR--TNVIPIIEDARHPAKYRMLVGMVDVI 217 (305)
Q Consensus 140 ~~~~g~~VLDlG~G~G~~t~~la~~~~~~~~V~avD~s~~~~~~l~~~a~~~--~nI~~~~~D~~~~~~~~~~~~~fD~V 217 (305)
.+.++.+|||+|||+|.++..++... +..+|+++|+|+.++..+.+.+++. .++.+++.|+... ...+||+|
T Consensus 28 ~~~~~~~vLDiG~G~G~~~~~la~~~-~~~~v~~vD~s~~~~~~a~~n~~~~~~~~i~~~~~d~~~~-----~~~~~D~v 101 (187)
T PRK08287 28 ELHRAKHLIDVGAGTGSVSIEAALQF-PSLQVTAIERNPDALRLIKENRQRFGCGNIDIIPGEAPIE-----LPGKADAI 101 (187)
T ss_pred CCCCCCEEEEECCcCCHHHHHHHHHC-CCCEEEEEECCHHHHHHHHHHHHHhCCCCeEEEecCchhh-----cCcCCCEE
Confidence 46678999999999999999999875 5679999999997666655555433 5788888887422 23589999
Q ss_pred EEeCCChhHHHHHHHHHhccCCCCcEEEEEEcccccCCCCchhhhHHHHHHHHHHCCCcEeEE
Q 021911 218 FSDVAQPDQARILALNASYFLKAGGHFVISIKANCIDSTVPAEAVFQSEVKKLQQDQFKPFEQ 280 (305)
Q Consensus 218 ~~d~~~~~~~~~l~~~a~~~LkpGG~lv~s~~~~~i~~~~~~~~v~~~~~~~l~~~Gf~~~e~ 280 (305)
+++.......+++. .+.+.|||||+|++... + ..-..+....+++.||+..+.
T Consensus 102 ~~~~~~~~~~~~l~-~~~~~Lk~gG~lv~~~~--~-------~~~~~~~~~~l~~~g~~~~~~ 154 (187)
T PRK08287 102 FIGGSGGNLTAIID-WSLAHLHPGGRLVLTFI--L-------LENLHSALAHLEKCGVSELDC 154 (187)
T ss_pred EECCCccCHHHHHH-HHHHhcCCCeEEEEEEe--c-------HhhHHHHHHHHHHCCCCcceE
Confidence 99876555556666 89999999999988751 1 011233356678889986664
|
|
| >PRK14103 trans-aconitate 2-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.52 E-value=7.4e-14 Score=125.65 Aligned_cols=111 Identities=23% Similarity=0.277 Sum_probs=87.7
Q ss_pred hhHHHHHHHccccccCCCCCCEEEEEecCCCccHHHHHhhhCCCcEEEEEeCChHHHHHHHHHHHcCCCeEEEEccCCCC
Q 021911 125 RSKLAAAVLGGVDNIWIKPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKRTNVIPIIEDARHP 204 (305)
Q Consensus 125 ~s~l~a~ll~~l~~~~~~~g~~VLDlG~G~G~~t~~la~~~~~~~~V~avD~s~~~~~~l~~~a~~~~nI~~~~~D~~~~ 204 (305)
+......++.. +.+.++.+|||+|||+|.++..+++.+ +..+|+++|+|+ .|++.+++ .++.+++.|+.+.
T Consensus 14 ~~~~~~~ll~~---l~~~~~~~vLDlGcG~G~~~~~l~~~~-p~~~v~gvD~s~----~~~~~a~~-~~~~~~~~d~~~~ 84 (255)
T PRK14103 14 RGRPFYDLLAR---VGAERARRVVDLGCGPGNLTRYLARRW-PGAVIEALDSSP----EMVAAARE-RGVDARTGDVRDW 84 (255)
T ss_pred hhCHHHHHHHh---CCCCCCCEEEEEcCCCCHHHHHHHHHC-CCCEEEEEECCH----HHHHHHHh-cCCcEEEcChhhC
Confidence 33444444433 346778999999999999999999986 567999999999 67777765 4789999998765
Q ss_pred cccccCCCcEeEEEEeCC---ChhHHHHHHHHHhccCCCCcEEEEEEc
Q 021911 205 AKYRMLVGMVDVIFSDVA---QPDQARILALNASYFLKAGGHFVISIK 249 (305)
Q Consensus 205 ~~~~~~~~~fD~V~~d~~---~~~~~~~l~~~a~~~LkpGG~lv~s~~ 249 (305)
. ...+||+|+++.. .+++..++. ++++.|||||+|++.++
T Consensus 85 ~----~~~~fD~v~~~~~l~~~~d~~~~l~-~~~~~LkpgG~l~~~~~ 127 (255)
T PRK14103 85 K----PKPDTDVVVSNAALQWVPEHADLLV-RWVDELAPGSWIAVQVP 127 (255)
T ss_pred C----CCCCceEEEEehhhhhCCCHHHHHH-HHHHhCCCCcEEEEEcC
Confidence 3 2468999999877 467777787 99999999999999753
|
|
| >COG2230 Cfa Cyclopropane fatty acid synthase and related methyltransferases [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=99.51 E-value=3.1e-13 Score=121.63 Aligned_cols=134 Identities=17% Similarity=0.197 Sum_probs=99.8
Q ss_pred eeccccCCccccCcceeEeecCCCceeeeeecCchhhHHHHHHHccccccCCCCCCEEEEEecCCCccHHHHHhhhCCCc
Q 021911 90 VTKNLVAGEAVYNEKRISVQNEDGTKVEYRIWNPFRSKLAAAVLGGVDNIWIKPGARVLYLGAASGTTVSHVSDIVGPNG 169 (305)
Q Consensus 90 ~t~~~~~~~~~y~e~~~~~~d~~~~~~~~~~~~~~~s~l~a~ll~~l~~~~~~~g~~VLDlG~G~G~~t~~la~~~~~~~ 169 (305)
+.+++.+....|.+...+++.. . .+.+-..++++.++||++|||||||+|.++.++|+.+ ..
T Consensus 35 Ld~~~~Yscayf~~~~~tL~eA-------------Q---~~k~~~~~~kl~L~~G~~lLDiGCGWG~l~~~aA~~y--~v 96 (283)
T COG2230 35 LDPSMTYSCAYFEDPDMTLEEA-------------Q---RAKLDLILEKLGLKPGMTLLDIGCGWGGLAIYAAEEY--GV 96 (283)
T ss_pred cCCCCceeeEEeCCCCCChHHH-------------H---HHHHHHHHHhcCCCCCCEEEEeCCChhHHHHHHHHHc--CC
Confidence 5677776666666665555442 1 1112122455689999999999999999999999997 46
Q ss_pred EEEEEeCChHHHHHHHHHHHcC---CCeEEEEccCCCCcccccCCCcEeEEEEeCC-----ChhHHHHHHHHHhccCCCC
Q 021911 170 VVYAVEFSHRSGRDLVNMAKKR---TNVIPIIEDARHPAKYRMLVGMVDVIFSDVA-----QPDQARILALNASYFLKAG 241 (305)
Q Consensus 170 ~V~avD~s~~~~~~l~~~a~~~---~nI~~~~~D~~~~~~~~~~~~~fD~V~~d~~-----~~~~~~~l~~~a~~~LkpG 241 (305)
+|++|++|+.......+.+++. .+|+++..|.+++. +.||.|++--. .......+. ++.++|+|+
T Consensus 97 ~V~GvTlS~~Q~~~~~~r~~~~gl~~~v~v~l~d~rd~~------e~fDrIvSvgmfEhvg~~~~~~ff~-~~~~~L~~~ 169 (283)
T COG2230 97 TVVGVTLSEEQLAYAEKRIAARGLEDNVEVRLQDYRDFE------EPFDRIVSVGMFEHVGKENYDDFFK-KVYALLKPG 169 (283)
T ss_pred EEEEeeCCHHHHHHHHHHHHHcCCCcccEEEeccccccc------cccceeeehhhHHHhCcccHHHHHH-HHHhhcCCC
Confidence 9999999996666666655555 48999999988774 45999998443 344556666 999999999
Q ss_pred cEEEEEE
Q 021911 242 GHFVISI 248 (305)
Q Consensus 242 G~lv~s~ 248 (305)
|.+++.+
T Consensus 170 G~~llh~ 176 (283)
T COG2230 170 GRMLLHS 176 (283)
T ss_pred ceEEEEE
Confidence 9999976
|
|
| >PLN02490 MPBQ/MSBQ methyltransferase | Back alignment and domain information |
|---|
Probab=99.50 E-value=1.1e-12 Score=122.16 Aligned_cols=137 Identities=18% Similarity=0.109 Sum_probs=97.4
Q ss_pred CCCCEEEEEecCCCccHHHHHhhhCCCcEEEEEeCChHHHHHHHHHHHcC---CCeEEEEccCCCCcccccCCCcEeEEE
Q 021911 142 KPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKR---TNVIPIIEDARHPAKYRMLVGMVDVIF 218 (305)
Q Consensus 142 ~~g~~VLDlG~G~G~~t~~la~~~~~~~~V~avD~s~~~~~~l~~~a~~~---~nI~~~~~D~~~~~~~~~~~~~fD~V~ 218 (305)
.++.+|||+|||+|.++..+++.+ +..+|+++|+|+ .+++.++++ .++.++..|+.+.+. ..++||+|+
T Consensus 112 ~~~~~VLDLGcGtG~~~l~La~~~-~~~~VtgVD~S~----~mL~~A~~k~~~~~i~~i~gD~e~lp~---~~~sFDvVI 183 (340)
T PLN02490 112 DRNLKVVDVGGGTGFTTLGIVKHV-DAKNVTILDQSP----HQLAKAKQKEPLKECKIIEGDAEDLPF---PTDYADRYV 183 (340)
T ss_pred CCCCEEEEEecCCcHHHHHHHHHC-CCCEEEEEECCH----HHHHHHHHhhhccCCeEEeccHHhCCC---CCCceeEEE
Confidence 467899999999999999999876 346899999999 444444443 578899999876542 246899999
Q ss_pred EeCC---ChhHHHHHHHHHhccCCCCcEEEEEEcccccCC-CC---chhh---hHHHHHHHHHHCCCcEeEEeecCCCC
Q 021911 219 SDVA---QPDQARILALNASYFLKAGGHFVISIKANCIDS-TV---PAEA---VFQSEVKKLQQDQFKPFEQVTLEPFE 287 (305)
Q Consensus 219 ~d~~---~~~~~~~l~~~a~~~LkpGG~lv~s~~~~~i~~-~~---~~~~---v~~~~~~~l~~~Gf~~~e~~~l~p~~ 287 (305)
++.. .++..+++. ++.++|||||+|++......... .. +... ...+..+.|++.||+.+++.++.++.
T Consensus 184 s~~~L~~~~d~~~~L~-e~~rvLkPGG~LvIi~~~~p~~~~~r~~~~~~~~~~t~eEl~~lL~~aGF~~V~i~~i~~~~ 261 (340)
T PLN02490 184 SAGSIEYWPDPQRGIK-EAYRVLKIGGKACLIGPVHPTFWLSRFFADVWMLFPKEEEYIEWFTKAGFKDVKLKRIGPKW 261 (340)
T ss_pred EcChhhhCCCHHHHHH-HHHHhcCCCcEEEEEEecCcchhHHHHhhhhhccCCCHHHHHHHHHHCCCeEEEEEEcChhh
Confidence 8654 456667777 99999999999988642111000 00 0000 11233577789999999988887764
|
|
| >PRK11188 rrmJ 23S rRNA methyltransferase J; Provisional | Back alignment and domain information |
|---|
Probab=99.50 E-value=3.9e-13 Score=117.56 Aligned_cols=114 Identities=28% Similarity=0.298 Sum_probs=83.9
Q ss_pred hhHHHHHHHccccccC-CCCCCEEEEEecCCCccHHHHHhhhCCCcEEEEEeCChHHHHHHHHHHHcCCCeEEEEccCCC
Q 021911 125 RSKLAAAVLGGVDNIW-IKPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKRTNVIPIIEDARH 203 (305)
Q Consensus 125 ~s~l~a~ll~~l~~~~-~~~g~~VLDlG~G~G~~t~~la~~~~~~~~V~avD~s~~~~~~l~~~a~~~~nI~~~~~D~~~ 203 (305)
++..+-.+++..+.+. ++++.+|||||||||.++..+++.+++.+.|++||+++ + ...++|+++++|+++
T Consensus 32 ~~r~~~kl~~~~~~~~~~~~~~~VLDlG~GtG~~t~~l~~~~~~~~~V~aVDi~~-----~----~~~~~v~~i~~D~~~ 102 (209)
T PRK11188 32 RSRAWFKLDEIQQSDKLFKPGMTVVDLGAAPGGWSQYAVTQIGDKGRVIACDILP-----M----DPIVGVDFLQGDFRD 102 (209)
T ss_pred chhHHHhhHHHHHHhccCCCCCEEEEEcccCCHHHHHHHHHcCCCceEEEEeccc-----c----cCCCCcEEEecCCCC
Confidence 4444444444333333 57889999999999999999999987778999999998 1 122679999999988
Q ss_pred Cccc-----ccCCCcEeEEEEeCCC-----h--hH-------HHHHHHHHhccCCCCcEEEEEE
Q 021911 204 PAKY-----RMLVGMVDVIFSDVAQ-----P--DQ-------ARILALNASYFLKAGGHFVISI 248 (305)
Q Consensus 204 ~~~~-----~~~~~~fD~V~~d~~~-----~--~~-------~~~l~~~a~~~LkpGG~lv~s~ 248 (305)
.... .....+||+|++|++. + ++ ..++. ++.++|||||.|++.+
T Consensus 103 ~~~~~~i~~~~~~~~~D~V~S~~~~~~~g~~~~d~~~~~~~~~~~L~-~~~~~LkpGG~~vi~~ 165 (209)
T PRK11188 103 ELVLKALLERVGDSKVQVVMSDMAPNMSGTPAVDIPRAMYLVELALD-MCRDVLAPGGSFVVKV 165 (209)
T ss_pred hHHHHHHHHHhCCCCCCEEecCCCCccCCChHHHHHHHHHHHHHHHH-HHHHHcCCCCEEEEEE
Confidence 5311 1235689999998741 1 21 34555 8999999999999976
|
|
| >TIGR02469 CbiT precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit | Back alignment and domain information |
|---|
Probab=99.50 E-value=5e-13 Score=106.01 Aligned_cols=105 Identities=26% Similarity=0.352 Sum_probs=82.2
Q ss_pred CCCCCCEEEEEecCCCccHHHHHhhhCCCcEEEEEeCChHHHHHHHHHHHcC--CCeEEEEccCCCCcccccCCCcEeEE
Q 021911 140 WIKPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKR--TNVIPIIEDARHPAKYRMLVGMVDVI 217 (305)
Q Consensus 140 ~~~~g~~VLDlG~G~G~~t~~la~~~~~~~~V~avD~s~~~~~~l~~~a~~~--~nI~~~~~D~~~~~~~~~~~~~fD~V 217 (305)
.+.++.+|||+|||+|.++..+++.+ +..+|+++|+|+.++..+.+.++.. ++++++..|+...... ...+||+|
T Consensus 16 ~~~~~~~vldlG~G~G~~~~~l~~~~-~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~D~v 92 (124)
T TIGR02469 16 RLRPGDVLWDIGAGSGSITIEAARLV-PNGRVYAIERNPEALRLIERNARRFGVSNIVIVEGDAPEALED--SLPEPDRV 92 (124)
T ss_pred CCCCCCEEEEeCCCCCHHHHHHHHHC-CCceEEEEcCCHHHHHHHHHHHHHhCCCceEEEeccccccChh--hcCCCCEE
Confidence 56677899999999999999999986 4579999999996666555554433 5788888887643221 23689999
Q ss_pred EEeCCChhHHHHHHHHHhccCCCCcEEEEEE
Q 021911 218 FSDVAQPDQARILALNASYFLKAGGHFVISI 248 (305)
Q Consensus 218 ~~d~~~~~~~~~l~~~a~~~LkpGG~lv~s~ 248 (305)
+++.+.....+++. ++.++|||+|+|++..
T Consensus 93 ~~~~~~~~~~~~l~-~~~~~Lk~gG~li~~~ 122 (124)
T TIGR02469 93 FIGGSGGLLQEILE-AIWRRLRPGGRIVLNA 122 (124)
T ss_pred EECCcchhHHHHHH-HHHHHcCCCCEEEEEe
Confidence 99876555566776 9999999999999975
|
This model recognizes the CbiT methylase which is responsible, in part (along with CbiE), for methylating precorrin-6y (or cobalt-precorrin-6y) at both the 5 and 15 positions as well as the concomitant decarbozylation at C-12. In many organisms, this protein is fused to the CbiE subunit. The fused protein, when found in organisms catalyzing the oxidative version of the cobalamin biosynthesis pathway, is called CobL. |
| >COG2242 CobL Precorrin-6B methylase 2 [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.50 E-value=1.1e-12 Score=110.63 Aligned_cols=130 Identities=22% Similarity=0.257 Sum_probs=101.3
Q ss_pred ccccCCCCCCEEEEEecCCCccHHHHHhhhCCCcEEEEEeCChHHHHHHHHHHHcC--CCeEEEEccCCCCcccccCCCc
Q 021911 136 VDNIWIKPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKR--TNVIPIIEDARHPAKYRMLVGM 213 (305)
Q Consensus 136 l~~~~~~~g~~VLDlG~G~G~~t~~la~~~~~~~~V~avD~s~~~~~~l~~~a~~~--~nI~~~~~D~~~~~~~~~~~~~ 213 (305)
|..+.++|+++++|+|||+|+.+..+| +++|.++|||+|-++.+++....++++. +|++.+..|+.+..+. ...
T Consensus 27 ls~L~~~~g~~l~DIGaGtGsi~iE~a-~~~p~~~v~AIe~~~~a~~~~~~N~~~fg~~n~~vv~g~Ap~~L~~---~~~ 102 (187)
T COG2242 27 LSKLRPRPGDRLWDIGAGTGSITIEWA-LAGPSGRVIAIERDEEALELIERNAARFGVDNLEVVEGDAPEALPD---LPS 102 (187)
T ss_pred HHhhCCCCCCEEEEeCCCccHHHHHHH-HhCCCceEEEEecCHHHHHHHHHHHHHhCCCcEEEEeccchHhhcC---CCC
Confidence 334469999999999999999999999 6789999999999997766555555544 8999999999776432 238
Q ss_pred EeEEEEeCCChhHHHHHHHHHhccCCCCcEEEEEEcccccCCCCchhhhHHHHHHHHHHCCC-cEeEE
Q 021911 214 VDVIFSDVAQPDQARILALNASYFLKAGGHFVISIKANCIDSTVPAEAVFQSEVKKLQQDQF-KPFEQ 280 (305)
Q Consensus 214 fD~V~~d~~~~~~~~~l~~~a~~~LkpGG~lv~s~~~~~i~~~~~~~~v~~~~~~~l~~~Gf-~~~e~ 280 (305)
+|+||..-. -....++. .+...|||||+|++.. . ..+.....++++++.|+ +++++
T Consensus 103 ~daiFIGGg-~~i~~ile-~~~~~l~~ggrlV~na--i-------tlE~~~~a~~~~~~~g~~ei~~v 159 (187)
T COG2242 103 PDAIFIGGG-GNIEEILE-AAWERLKPGGRLVANA--I-------TLETLAKALEALEQLGGREIVQV 159 (187)
T ss_pred CCEEEECCC-CCHHHHHH-HHHHHcCcCCeEEEEe--e-------cHHHHHHHHHHHHHcCCceEEEE
Confidence 999999888 66777777 9999999999999975 1 11223455688888999 55543
|
|
| >TIGR03704 PrmC_rel_meth putative protein-(glutamine-N5) methyltransferase, unknown substrate-specific | Back alignment and domain information |
|---|
Probab=99.49 E-value=1.6e-12 Score=116.79 Aligned_cols=165 Identities=16% Similarity=0.097 Sum_probs=104.4
Q ss_pred cCCccccCcceeEeecCCCceeeeeecCchhhHHHHHHHccccccCCCCCCEEEEEecCCCccHHHHHhhhCCCcEEEEE
Q 021911 95 VAGEAVYNEKRISVQNEDGTKVEYRIWNPFRSKLAAAVLGGVDNIWIKPGARVLYLGAASGTTVSHVSDIVGPNGVVYAV 174 (305)
Q Consensus 95 ~~~~~~y~e~~~~~~d~~~~~~~~~~~~~~~s~l~a~ll~~l~~~~~~~g~~VLDlG~G~G~~t~~la~~~~~~~~V~av 174 (305)
+.++..|..-.+.+... .| ...+-...++..++..+. ...+..+|||+|||+|.++..++... +..+|+++
T Consensus 46 i~g~~~f~g~~~~v~~~-----vf-~pr~~Te~Lv~~~l~~~~--~~~~~~~vLDlg~GsG~i~l~la~~~-~~~~v~~v 116 (251)
T TIGR03704 46 VLGWAEFCGLRIAVDPG-----VF-VPRRRTEFLVDEAAALAR--PRSGTLVVVDLCCGSGAVGAALAAAL-DGIELHAA 116 (251)
T ss_pred hcccCeEcCeEEEECCC-----Cc-CCCccHHHHHHHHHHhhc--ccCCCCEEEEecCchHHHHHHHHHhC-CCCEEEEE
Confidence 34445555545555442 11 112224455555544322 11234689999999999999999875 45689999
Q ss_pred eCChHHHHHHHHHHHcCCCeEEEEccCCCCcccccCCCcEeEEEEeCCCh----------h-------------------
Q 021911 175 EFSHRSGRDLVNMAKKRTNVIPIIEDARHPAKYRMLVGMVDVIFSDVAQP----------D------------------- 225 (305)
Q Consensus 175 D~s~~~~~~l~~~a~~~~nI~~~~~D~~~~~~~~~~~~~fD~V~~d~~~~----------~------------------- 225 (305)
|+|+.+++.+.++++. .++.+++.|+.+.... .....||+|++|+|.. +
T Consensus 117 Dis~~al~~A~~N~~~-~~~~~~~~D~~~~l~~-~~~~~fDlVv~NPPy~~~~~~~~~~~e~~~~ep~~al~gg~dgl~~ 194 (251)
T TIGR03704 117 DIDPAAVRCARRNLAD-AGGTVHEGDLYDALPT-ALRGRVDILAANAPYVPTDAIALMPPEARDHEPRVALDGGADGLDV 194 (251)
T ss_pred ECCHHHHHHHHHHHHH-cCCEEEEeechhhcch-hcCCCEeEEEECCCCCCchhhhcCCHHHHhCCCHHHhcCCCcHHHH
Confidence 9999666655555543 3468889998654321 1235799999999831 0
Q ss_pred HHHHHHHHHhccCCCCcEEEEEEcccccCCCCchhhhHHHHHHHHHHCCCcEeEEe
Q 021911 226 QARILALNASYFLKAGGHFVISIKANCIDSTVPAEAVFQSEVKKLQQDQFKPFEQV 281 (305)
Q Consensus 226 ~~~~l~~~a~~~LkpGG~lv~s~~~~~i~~~~~~~~v~~~~~~~l~~~Gf~~~e~~ 281 (305)
+.+++. ++.++|||+|+|++.+.. .. ..+....|++.+|+..-..
T Consensus 195 ~~~i~~-~a~~~L~~gG~l~l~~~~------~~----~~~v~~~l~~~g~~~~~~~ 239 (251)
T TIGR03704 195 LRRVAA-GAPDWLAPGGHLLVETSE------RQ----APLAVEAFARAGLIARVAS 239 (251)
T ss_pred HHHHHH-HHHHhcCCCCEEEEEECc------ch----HHHHHHHHHHCCCCceeeE
Confidence 234555 889999999999998721 11 1233566778888876444
|
This protein family is closely related to two different families of protein-(glutamine-N5) methyltransferase. The first is PrmB, which modifies ribosomal protein L3 in some bacteria. The second is PrmC (HemK), which modifies peptide chain release factors 1 and 2 in most bacteria and also in eukaryotes. The glutamine side chain-binding motif NPPY shared by PrmB and PrmC is N[VAT]PY in this family. The protein substrate is unknown. |
| >PRK11873 arsM arsenite S-adenosylmethyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.49 E-value=1.3e-12 Score=118.66 Aligned_cols=137 Identities=28% Similarity=0.340 Sum_probs=98.1
Q ss_pred CCCCCCEEEEEecCCCccHHHHHhhhCCCcEEEEEeCChHHHHHHHHHHHcC--CCeEEEEccCCCCcccccCCCcEeEE
Q 021911 140 WIKPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKR--TNVIPIIEDARHPAKYRMLVGMVDVI 217 (305)
Q Consensus 140 ~~~~g~~VLDlG~G~G~~t~~la~~~~~~~~V~avD~s~~~~~~l~~~a~~~--~nI~~~~~D~~~~~~~~~~~~~fD~V 217 (305)
.++++.+|||+|||+|..+..++..+++.++|+++|+|+.+++.+.+..... +++.+++.|+...+. ....||+|
T Consensus 74 ~~~~g~~VLDiG~G~G~~~~~~a~~~g~~~~v~gvD~s~~~l~~A~~~~~~~g~~~v~~~~~d~~~l~~---~~~~fD~V 150 (272)
T PRK11873 74 ELKPGETVLDLGSGGGFDCFLAARRVGPTGKVIGVDMTPEMLAKARANARKAGYTNVEFRLGEIEALPV---ADNSVDVI 150 (272)
T ss_pred cCCCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEECCCHHHHHHHHHHHHHcCCCCEEEEEcchhhCCC---CCCceeEE
Confidence 5678999999999999999988888877789999999996555554444332 588999999876542 24689999
Q ss_pred EEeCC---ChhHHHHHHHHHhccCCCCcEEEEEEcccccCCCCchhh---------------hHHHHHHHHHHCCCcEeE
Q 021911 218 FSDVA---QPDQARILALNASYFLKAGGHFVISIKANCIDSTVPAEA---------------VFQSEVKKLQQDQFKPFE 279 (305)
Q Consensus 218 ~~d~~---~~~~~~~l~~~a~~~LkpGG~lv~s~~~~~i~~~~~~~~---------------v~~~~~~~l~~~Gf~~~e 279 (305)
+++.. .++...++. ++.++|||||+|+++.... ....+... ...+..+.|++.||..++
T Consensus 151 i~~~v~~~~~d~~~~l~-~~~r~LkpGG~l~i~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~aGf~~v~ 227 (272)
T PRK11873 151 ISNCVINLSPDKERVFK-EAFRVLKPGGRFAISDVVL--RGELPEEIRNDAELYAGCVAGALQEEEYLAMLAEAGFVDIT 227 (272)
T ss_pred EEcCcccCCCCHHHHHH-HHHHHcCCCcEEEEEEeec--cCCCCHHHHHhHHHHhccccCCCCHHHHHHHHHHCCCCceE
Confidence 98765 456667777 9999999999999975211 11111100 012234666888999877
Q ss_pred Eee
Q 021911 280 QVT 282 (305)
Q Consensus 280 ~~~ 282 (305)
+..
T Consensus 228 i~~ 230 (272)
T PRK11873 228 IQP 230 (272)
T ss_pred EEe
Confidence 644
|
|
| >PRK01683 trans-aconitate 2-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.48 E-value=2.4e-13 Score=122.33 Aligned_cols=109 Identities=17% Similarity=0.310 Sum_probs=87.0
Q ss_pred HHHHHHHccccccCCCCCCEEEEEecCCCccHHHHHhhhCCCcEEEEEeCChHHHHHHHHHHHcC-CCeEEEEccCCCCc
Q 021911 127 KLAAAVLGGVDNIWIKPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKR-TNVIPIIEDARHPA 205 (305)
Q Consensus 127 ~l~a~ll~~l~~~~~~~g~~VLDlG~G~G~~t~~la~~~~~~~~V~avD~s~~~~~~l~~~a~~~-~nI~~~~~D~~~~~ 205 (305)
+.+..++. .+.+.++.+|||+|||+|.++..+++.+ +..+|++||+|+ .+++.++++ +++.++..|+....
T Consensus 18 ~~~~~ll~---~~~~~~~~~vLDiGcG~G~~~~~la~~~-~~~~v~gvD~s~----~~i~~a~~~~~~~~~~~~d~~~~~ 89 (258)
T PRK01683 18 RPARDLLA---RVPLENPRYVVDLGCGPGNSTELLVERW-PAARITGIDSSP----AMLAEARSRLPDCQFVEADIASWQ 89 (258)
T ss_pred cHHHHHHh---hCCCcCCCEEEEEcccCCHHHHHHHHHC-CCCEEEEEECCH----HHHHHHHHhCCCCeEEECchhccC
Confidence 34555543 3356778999999999999999999886 567999999999 666666655 67999999987653
Q ss_pred ccccCCCcEeEEEEeCC---ChhHHHHHHHHHhccCCCCcEEEEEE
Q 021911 206 KYRMLVGMVDVIFSDVA---QPDQARILALNASYFLKAGGHFVISI 248 (305)
Q Consensus 206 ~~~~~~~~fD~V~~d~~---~~~~~~~l~~~a~~~LkpGG~lv~s~ 248 (305)
. ..+||+|+++.. .+++..++. ++.+.|||||.|++++
T Consensus 90 ~----~~~fD~v~~~~~l~~~~d~~~~l~-~~~~~LkpgG~~~~~~ 130 (258)
T PRK01683 90 P----PQALDLIFANASLQWLPDHLELFP-RLVSLLAPGGVLAVQM 130 (258)
T ss_pred C----CCCccEEEEccChhhCCCHHHHHH-HHHHhcCCCcEEEEEC
Confidence 2 358999999877 356777777 9999999999999976
|
|
| >COG2519 GCD14 tRNA(1-methyladenosine) methyltransferase and related methyltransferases [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.48 E-value=7.4e-13 Score=116.46 Aligned_cols=126 Identities=29% Similarity=0.381 Sum_probs=100.2
Q ss_pred CCCCCCEEEEEecCCCccHHHHHhhhCCCcEEEEEeCChHHHHHHHHHHHcC---CCeEEEEccCCCCcccccCCCcEeE
Q 021911 140 WIKPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKR---TNVIPIIEDARHPAKYRMLVGMVDV 216 (305)
Q Consensus 140 ~~~~g~~VLDlG~G~G~~t~~la~~~~~~~~V~avD~s~~~~~~l~~~a~~~---~nI~~~~~D~~~~~~~~~~~~~fD~ 216 (305)
.+.|+++|||.|+|+|.++..||..+++.++|+.+|+.+.+++.+.++.++- ++|.+...|+.+... ...||+
T Consensus 91 gi~pg~rVlEAGtGSG~lt~~La~~vg~~G~v~tyE~r~d~~k~A~~Nl~~~~l~d~v~~~~~Dv~~~~~----~~~vDa 166 (256)
T COG2519 91 GISPGSRVLEAGTGSGALTAYLARAVGPEGHVTTYEIREDFAKTARENLSEFGLGDRVTLKLGDVREGID----EEDVDA 166 (256)
T ss_pred CCCCCCEEEEcccCchHHHHHHHHhhCCCceEEEEEecHHHHHHHHHHHHHhccccceEEEecccccccc----ccccCE
Confidence 6899999999999999999999999999999999999996666666666553 458888999987753 349999
Q ss_pred EEEeCCChhHHHHHHHHHhccCCCCcEEEEEEcccccCCCCchhhhHHHHHHHHHHCCCcEeEEe
Q 021911 217 IFSDVAQPDQARILALNASYFLKAGGHFVISIKANCIDSTVPAEAVFQSEVKKLQQDQFKPFEQV 281 (305)
Q Consensus 217 V~~d~~~~~~~~~l~~~a~~~LkpGG~lv~s~~~~~i~~~~~~~~v~~~~~~~l~~~Gf~~~e~~ 281 (305)
|++|+|.|+.. +. ++...|||||.+++.. .|+ + -..+.++.|++.||.-++.+
T Consensus 167 v~LDmp~PW~~--le-~~~~~Lkpgg~~~~y~--P~v------e-Qv~kt~~~l~~~g~~~ie~~ 219 (256)
T COG2519 167 VFLDLPDPWNV--LE-HVSDALKPGGVVVVYS--PTV------E-QVEKTVEALRERGFVDIEAV 219 (256)
T ss_pred EEEcCCChHHH--HH-HHHHHhCCCcEEEEEc--CCH------H-HHHHHHHHHHhcCccchhhh
Confidence 99999988744 55 8999999999999887 231 1 22445677777777765543
|
|
| >PF02353 CMAS: Mycolic acid cyclopropane synthetase; InterPro: IPR003333 This entry represents mycolic acid cyclopropane synthases and related enzymes, including CmaA1, CmaA2 (cyclopropane mycolic acid synthase A1 and A2) and MmaA1-4 (methoxymycolic acid synthase A1-4) | Back alignment and domain information |
|---|
Probab=99.48 E-value=5.7e-13 Score=120.89 Aligned_cols=104 Identities=23% Similarity=0.317 Sum_probs=75.6
Q ss_pred ccccCCCCCCEEEEEecCCCccHHHHHhhhCCCcEEEEEeCChHHHHHHHHHHHcC---CCeEEEEccCCCCcccccCCC
Q 021911 136 VDNIWIKPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKR---TNVIPIIEDARHPAKYRMLVG 212 (305)
Q Consensus 136 l~~~~~~~g~~VLDlG~G~G~~t~~la~~~~~~~~V~avD~s~~~~~~l~~~a~~~---~nI~~~~~D~~~~~~~~~~~~ 212 (305)
++++.++|+++|||||||+|.++.++|+..+ ++|++|.+|+...+.+.+.+++. .+|++.+.|.++.+ .
T Consensus 55 ~~~~~l~~G~~vLDiGcGwG~~~~~~a~~~g--~~v~gitlS~~Q~~~a~~~~~~~gl~~~v~v~~~D~~~~~------~ 126 (273)
T PF02353_consen 55 CEKLGLKPGDRVLDIGCGWGGLAIYAAERYG--CHVTGITLSEEQAEYARERIREAGLEDRVEVRLQDYRDLP------G 126 (273)
T ss_dssp HTTTT--TT-EEEEES-TTSHHHHHHHHHH----EEEEEES-HHHHHHHHHHHHCSTSSSTEEEEES-GGG---------
T ss_pred HHHhCCCCCCEEEEeCCCccHHHHHHHHHcC--cEEEEEECCHHHHHHHHHHHHhcCCCCceEEEEeeccccC------C
Confidence 4556899999999999999999999999974 69999999997777776666665 46899999987653 4
Q ss_pred cEeEEEEeCC-----ChhHHHHHHHHHhccCCCCcEEEEEE
Q 021911 213 MVDVIFSDVA-----QPDQARILALNASYFLKAGGHFVISI 248 (305)
Q Consensus 213 ~fD~V~~d~~-----~~~~~~~l~~~a~~~LkpGG~lv~s~ 248 (305)
+||.|++--. ..+....+. ++.++|||||.+++.+
T Consensus 127 ~fD~IvSi~~~Ehvg~~~~~~~f~-~~~~~LkpgG~~~lq~ 166 (273)
T PF02353_consen 127 KFDRIVSIEMFEHVGRKNYPAFFR-KISRLLKPGGRLVLQT 166 (273)
T ss_dssp S-SEEEEESEGGGTCGGGHHHHHH-HHHHHSETTEEEEEEE
T ss_pred CCCEEEEEechhhcChhHHHHHHH-HHHHhcCCCcEEEEEe
Confidence 9999998433 245566666 9999999999999865
|
All are thought to be S-adenosyl-L-methionine (SAM) utilising methyltransferases []. Mycolic acid cyclopropane synthase or cyclopropane-fatty-acyl-phospholipid synthase (CFA synthase) 2.1.1.79 from EC catalyses the reaction: |
| >TIGR00091 tRNA (guanine-N(7)-)-methyltransferase | Back alignment and domain information |
|---|
Probab=99.47 E-value=4.4e-13 Score=115.86 Aligned_cols=127 Identities=20% Similarity=0.246 Sum_probs=92.8
Q ss_pred CCCCEEEEEecCCCccHHHHHhhhCCCcEEEEEeCChHHHHHHHHHHHcC--CCeEEEEccCCCCcccccCCCcEeEEEE
Q 021911 142 KPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKR--TNVIPIIEDARHPAKYRMLVGMVDVIFS 219 (305)
Q Consensus 142 ~~g~~VLDlG~G~G~~t~~la~~~~~~~~V~avD~s~~~~~~l~~~a~~~--~nI~~~~~D~~~~~~~~~~~~~fD~V~~ 219 (305)
....+|||||||+|.++..+|... +...|++||+++.+++.+.+.+.+. .||.+++.|+.+..........+|.|++
T Consensus 15 ~~~~~ilDiGcG~G~~~~~la~~~-p~~~v~gvD~~~~~l~~a~~~~~~~~l~ni~~i~~d~~~~~~~~~~~~~~d~v~~ 93 (194)
T TIGR00091 15 NKAPLHLEIGCGKGRFLIDMAKQN-PDKNFLGIEIHTPIVLAANNKANKLGLKNLHVLCGDANELLDKFFPDGSLSKVFL 93 (194)
T ss_pred CCCceEEEeCCCccHHHHHHHHhC-CCCCEEEEEeeHHHHHHHHHHHHHhCCCCEEEEccCHHHHHHhhCCCCceeEEEE
Confidence 345799999999999999999875 6789999999997766666555543 6899999999765432122458999999
Q ss_pred eCCChh-----------HHHHHHHHHhccCCCCcEEEEEEcccccCCCCchhhhHHHHHHHHHHCC-CcEeE
Q 021911 220 DVAQPD-----------QARILALNASYFLKAGGHFVISIKANCIDSTVPAEAVFQSEVKKLQQDQ-FKPFE 279 (305)
Q Consensus 220 d~~~~~-----------~~~~l~~~a~~~LkpGG~lv~s~~~~~i~~~~~~~~v~~~~~~~l~~~G-f~~~e 279 (305)
+.|.|. +.+++. .++++|||||.|++++ +....+...++.+.+.+ |+...
T Consensus 94 ~~pdpw~k~~h~~~r~~~~~~l~-~~~r~LkpgG~l~~~t---------d~~~~~~~~~~~~~~~~~f~~~~ 155 (194)
T TIGR00091 94 NFPDPWPKKRHNKRRITQPHFLK-EYANVLKKGGVIHFKT---------DNEPLFEDMLKVLSENDLFENTS 155 (194)
T ss_pred ECCCcCCCCCccccccCCHHHHH-HHHHHhCCCCEEEEEe---------CCHHHHHHHHHHHHhCCCeEecc
Confidence 987542 135665 8999999999999987 12233444455665554 66543
|
In E. coli, this protein flanks the DNA repair protein MutY, also called micA. |
| >PF05401 NodS: Nodulation protein S (NodS); InterPro: IPR008715 This entry consists of nodulation S (NodS) proteins | Back alignment and domain information |
|---|
Probab=99.47 E-value=1.8e-12 Score=110.36 Aligned_cols=151 Identities=21% Similarity=0.217 Sum_probs=100.1
Q ss_pred CCCCCEEEEEecCCCccHHHHHhhhCCCcEEEEEeCChHHHHHHHHHHHcCCCeEEEEccCCCCcccccCCCcEeEEEEe
Q 021911 141 IKPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKRTNVIPIIEDARHPAKYRMLVGMVDVIFSD 220 (305)
Q Consensus 141 ~~~g~~VLDlG~G~G~~t~~la~~~~~~~~V~avD~s~~~~~~l~~~a~~~~nI~~~~~D~~~~~~~~~~~~~fD~V~~d 220 (305)
...-.++||+||+.|.+|..||.++. .++++|+|+.++....+..+..++|.+++.|+.... +.++||+|++.
T Consensus 41 ~~ry~~alEvGCs~G~lT~~LA~rCd---~LlavDis~~Al~~Ar~Rl~~~~~V~~~~~dvp~~~----P~~~FDLIV~S 113 (201)
T PF05401_consen 41 RRRYRRALEVGCSIGVLTERLAPRCD---RLLAVDISPRALARARERLAGLPHVEWIQADVPEFW----PEGRFDLIVLS 113 (201)
T ss_dssp TSSEEEEEEE--TTSHHHHHHGGGEE---EEEEEES-HHHHHHHHHHTTT-SSEEEEES-TTT-------SS-EEEEEEE
T ss_pred ccccceeEecCCCccHHHHHHHHhhC---ceEEEeCCHHHHHHHHHhcCCCCCeEEEECcCCCCC----CCCCeeEEEEe
Confidence 34457999999999999999999963 899999999776666666665589999999997764 35799999875
Q ss_pred CC-----Ch-hHHHHHHHHHhccCCCCcEEEEEEc--ccccCCCCchhhhH-HHHHHHHHHCCCcEeEEeecCCCCCceE
Q 021911 221 VA-----QP-DQARILALNASYFLKAGGHFVISIK--ANCIDSTVPAEAVF-QSEVKKLQQDQFKPFEQVTLEPFERDHA 291 (305)
Q Consensus 221 ~~-----~~-~~~~~l~~~a~~~LkpGG~lv~s~~--~~~i~~~~~~~~v~-~~~~~~l~~~Gf~~~e~~~l~p~~~~~~ 291 (305)
.. .. +....+. ++...|+|||.||+.+. ..|..+. ..| ++.+..+-++-|..++.+...-...+.-
T Consensus 114 EVlYYL~~~~~L~~~l~-~l~~~L~pgG~LV~g~~rd~~c~~wg----h~~ga~tv~~~~~~~~~~~~~~~~~~~~~~~~ 188 (201)
T PF05401_consen 114 EVLYYLDDAEDLRAALD-RLVAALAPGGHLVFGHARDANCRRWG----HAAGAETVLEMLQEHLTEVERVECRGGSPNED 188 (201)
T ss_dssp S-GGGSSSHHHHHHHHH-HHHHTEEEEEEEEEEEE-HHHHHHTT-----S--HHHHHHHHHHHSEEEEEEEEE-SSTTSE
T ss_pred hHhHcCCCHHHHHHHHH-HHHHHhCCCCEEEEEEecCCcccccC----cccchHHHHHHHHHHhhheeEEEEcCCCCCCc
Confidence 54 22 3444555 89999999999999873 1231111 011 1223333334488888888888888889
Q ss_pred EEEEEEcCCCCC
Q 021911 292 CVVGGYRMPKKQ 303 (305)
Q Consensus 292 ~vv~~~~~~~~~ 303 (305)
+++++++++...
T Consensus 189 ~~~~~~~~~~~~ 200 (201)
T PF05401_consen 189 CLLARFRNPVSA 200 (201)
T ss_dssp EEEEEEE--SSS
T ss_pred eEeeeecCCcCC
Confidence 999999987643
|
The products of the rhizobial nodulation genes are involved in the biosynthesis of lipochitin oligosaccharides (LCOs), which are host-specific signal molecules required for nodule formation. NodS is an S-adenosyl-L-methionine (SAM)-dependent methyltransferase involved in N methylation of LCOs. NodS uses N-deacetylated chitooligosaccharides, the products of the NodBC proteins, as its methyl acceptors [].; GO: 0008757 S-adenosylmethionine-dependent methyltransferase activity, 0009312 oligosaccharide biosynthetic process, 0009877 nodulation; PDB: 3OFK_D 3OFJ_A. |
| >PRK13168 rumA 23S rRNA m(5)U1939 methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.47 E-value=1.4e-12 Score=126.36 Aligned_cols=148 Identities=18% Similarity=0.135 Sum_probs=106.8
Q ss_pred hHHHHHHHccccccCCCCCCEEEEEecCCCccHHHHHhhhCCCcEEEEEeCChHHHHHHHHHHHcC--CCeEEEEccCCC
Q 021911 126 SKLAAAVLGGVDNIWIKPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKR--TNVIPIIEDARH 203 (305)
Q Consensus 126 s~l~a~ll~~l~~~~~~~g~~VLDlG~G~G~~t~~la~~~~~~~~V~avD~s~~~~~~l~~~a~~~--~nI~~~~~D~~~ 203 (305)
..+...++..+ .+.++.+|||+|||+|.++..+|+.. .+|+++|+|+.+++.+.++++.. .|+.+++.|+.+
T Consensus 283 e~l~~~vl~~l---~~~~~~~VLDlgcGtG~~sl~la~~~---~~V~gvD~s~~al~~A~~n~~~~~~~~v~~~~~d~~~ 356 (443)
T PRK13168 283 QKMVARALEWL---DPQPGDRVLDLFCGLGNFTLPLARQA---AEVVGVEGVEAMVERARENARRNGLDNVTFYHANLEE 356 (443)
T ss_pred HHHHHHHHHHh---cCCCCCEEEEEeccCCHHHHHHHHhC---CEEEEEeCCHHHHHHHHHHHHHcCCCceEEEEeChHH
Confidence 34555554433 45678999999999999999999874 48999999997777776666544 579999999865
Q ss_pred Ccc-cccCCCcEeEEEEeCCChhHHHHHHHHHhccCCCCcEEEEEEcccccCCCCchhhhHHHHHHHHHHCCCcEeEEee
Q 021911 204 PAK-YRMLVGMVDVIFSDVAQPDQARILALNASYFLKAGGHFVISIKANCIDSTVPAEAVFQSEVKKLQQDQFKPFEQVT 282 (305)
Q Consensus 204 ~~~-~~~~~~~fD~V~~d~~~~~~~~~l~~~a~~~LkpGG~lv~s~~~~~i~~~~~~~~v~~~~~~~l~~~Gf~~~e~~~ 282 (305)
... ......+||+|++|+|.....+.+. .+.+ |+|.+.+++|. ....++..+..|.+.||++.++..
T Consensus 357 ~l~~~~~~~~~fD~Vi~dPPr~g~~~~~~-~l~~-~~~~~ivyvSC----------np~tlaRDl~~L~~~gY~l~~i~~ 424 (443)
T PRK13168 357 DFTDQPWALGGFDKVLLDPPRAGAAEVMQ-ALAK-LGPKRIVYVSC----------NPATLARDAGVLVEAGYRLKRAGM 424 (443)
T ss_pred hhhhhhhhcCCCCEEEECcCCcChHHHHH-HHHh-cCCCeEEEEEe----------ChHHhhccHHHHhhCCcEEEEEEE
Confidence 421 1112357999999999654444553 4444 68988877774 123356677888888999999888
Q ss_pred cCCCCCceE
Q 021911 283 LEPFERDHA 291 (305)
Q Consensus 283 l~p~~~~~~ 291 (305)
++.|.+.+.
T Consensus 425 ~DmFP~T~H 433 (443)
T PRK13168 425 LDMFPHTGH 433 (443)
T ss_pred eccCCCCCc
Confidence 887776443
|
|
| >TIGR00080 pimt protein-L-isoaspartate(D-aspartate) O-methyltransferase | Back alignment and domain information |
|---|
Probab=99.46 E-value=7.3e-13 Score=116.24 Aligned_cols=111 Identities=27% Similarity=0.378 Sum_probs=84.8
Q ss_pred HHHHHHccccccCCCCCCEEEEEecCCCccHHHHHhhhCCCcEEEEEeCChHHHHHHHHHHHcC--CCeEEEEccCCCCc
Q 021911 128 LAAAVLGGVDNIWIKPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKR--TNVIPIIEDARHPA 205 (305)
Q Consensus 128 l~a~ll~~l~~~~~~~g~~VLDlG~G~G~~t~~la~~~~~~~~V~avD~s~~~~~~l~~~a~~~--~nI~~~~~D~~~~~ 205 (305)
+.+.+++.+ .++++.+|||+|||+|.++..+++.+++.++|++||+++..+..+.+.+++. +|+++++.|+....
T Consensus 65 ~~~~~~~~l---~~~~~~~VLDiG~GsG~~a~~la~~~~~~g~V~~vD~~~~~~~~A~~~~~~~g~~~v~~~~~d~~~~~ 141 (215)
T TIGR00080 65 MVAMMTELL---ELKPGMKVLEIGTGSGYQAAVLAEIVGRDGLVVSIERIPELAEKAERRLRKLGLDNVIVIVGDGTQGW 141 (215)
T ss_pred HHHHHHHHh---CCCCcCEEEEECCCccHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHCCCCCeEEEECCcccCC
Confidence 444444433 5788999999999999999999999876778999999996665555555443 58999999987643
Q ss_pred ccccCCCcEeEEEEeCCChhHHHHHHHHHhccCCCCcEEEEEE
Q 021911 206 KYRMLVGMVDVIFSDVAQPDQARILALNASYFLKAGGHFVISI 248 (305)
Q Consensus 206 ~~~~~~~~fD~V~~d~~~~~~~~~l~~~a~~~LkpGG~lv~s~ 248 (305)
.. ..+||+|+++.+.+.... .+.+.|||||+|++.+
T Consensus 142 ~~---~~~fD~Ii~~~~~~~~~~----~~~~~L~~gG~lv~~~ 177 (215)
T TIGR00080 142 EP---LAPYDRIYVTAAGPKIPE----ALIDQLKEGGILVMPV 177 (215)
T ss_pred cc---cCCCCEEEEcCCcccccH----HHHHhcCcCcEEEEEE
Confidence 21 358999999887654432 4557899999999986
|
Among the prokaryotes, the gene name is pcm. Among eukaryotes, pimt. |
| >PRK14966 unknown domain/N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase fusion protein; Provisional | Back alignment and domain information |
|---|
Probab=99.44 E-value=7.4e-12 Score=118.64 Aligned_cols=155 Identities=21% Similarity=0.184 Sum_probs=101.8
Q ss_pred chhhHHHHHHHccccccCCCCCCEEEEEecCCCccHHHHHhhhCCCcEEEEEeCChHHHHHHHHHHHcC-CCeEEEEccC
Q 021911 123 PFRSKLAAAVLGGVDNIWIKPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKR-TNVIPIIEDA 201 (305)
Q Consensus 123 ~~~s~l~a~ll~~l~~~~~~~g~~VLDlG~G~G~~t~~la~~~~~~~~V~avD~s~~~~~~l~~~a~~~-~nI~~~~~D~ 201 (305)
|....++..++. .+.++.+|||+|||+|..+..++... +..+|+++|+|+.+++.+.++++.. .++.+++.|+
T Consensus 236 peTE~LVe~aL~-----~l~~~~rVLDLGcGSG~IaiaLA~~~-p~a~VtAVDiS~~ALe~AreNa~~~g~rV~fi~gDl 309 (423)
T PRK14966 236 PETEHLVEAVLA-----RLPENGRVWDLGTGSGAVAVTVALER-PDAFVRASDISPPALETARKNAADLGARVEFAHGSW 309 (423)
T ss_pred ccHHHHHHHhhh-----ccCCCCEEEEEeChhhHHHHHHHHhC-CCCEEEEEECCHHHHHHHHHHHHHcCCcEEEEEcch
Confidence 344556666653 23456799999999999999998764 5679999999997766666665543 4799999998
Q ss_pred CCCcccccCCCcEeEEEEeCCC----------------h------------hHHHHHHHHHhccCCCCcEEEEEEccccc
Q 021911 202 RHPAKYRMLVGMVDVIFSDVAQ----------------P------------DQARILALNASYFLKAGGHFVISIKANCI 253 (305)
Q Consensus 202 ~~~~~~~~~~~~fD~V~~d~~~----------------~------------~~~~~l~~~a~~~LkpGG~lv~s~~~~~i 253 (305)
.+.... ...+||+|++|+|. | ...+++. ++.++|+|+|++++.+..
T Consensus 310 ~e~~l~--~~~~FDLIVSNPPYI~~~e~~l~~~~v~~EP~~AL~gG~dGL~~yr~Ii~-~a~~~LkpgG~lilEiG~--- 383 (423)
T PRK14966 310 FDTDMP--SEGKWDIIVSNPPYIENGDKHLLQGDLRFEPQIALTDFSDGLSCIRTLAQ-GAPDRLAEGGFLLLEHGF--- 383 (423)
T ss_pred hccccc--cCCCccEEEECCCCCCcchhhhcchhhhcCHHHHhhCCCchHHHHHHHHH-HHHHhcCCCcEEEEEECc---
Confidence 654211 13579999999982 0 1223444 788999999999987611
Q ss_pred CCCCchhhhHHHHHHHHHHCCCcEeEEeecCCCCCceEEEEEEEc
Q 021911 254 DSTVPAEAVFQSEVKKLQQDQFKPFEQVTLEPFERDHACVVGGYR 298 (305)
Q Consensus 254 ~~~~~~~~v~~~~~~~l~~~Gf~~~e~~~l~p~~~~~~~vv~~~~ 298 (305)
...+ ...+.+++.||..++.. -+-..++.+ +++++.
T Consensus 384 ---~Q~e----~V~~ll~~~Gf~~v~v~-kDl~G~dR~-v~~~~~ 419 (423)
T PRK14966 384 ---DQGA----AVRGVLAENGFSGVETL-PDLAGLDRV-TLGKYM 419 (423)
T ss_pred ---cHHH----HHHHHHHHCCCcEEEEE-EcCCCCcEE-EEEEEh
Confidence 1111 22345567888866543 222333444 445543
|
|
| >PRK13942 protein-L-isoaspartate O-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.44 E-value=1.5e-12 Score=114.01 Aligned_cols=112 Identities=29% Similarity=0.329 Sum_probs=84.9
Q ss_pred HHHHHHHccccccCCCCCCEEEEEecCCCccHHHHHhhhCCCcEEEEEeCChHHHHHHHHHHHcC--CCeEEEEccCCCC
Q 021911 127 KLAAAVLGGVDNIWIKPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKR--TNVIPIIEDARHP 204 (305)
Q Consensus 127 ~l~a~ll~~l~~~~~~~g~~VLDlG~G~G~~t~~la~~~~~~~~V~avD~s~~~~~~l~~~a~~~--~nI~~~~~D~~~~ 204 (305)
.+.+.++..+ .++++.+|||+|||+|..+..+++.+++.++|+++|+++..++.+.+.+++. .||.+++.|+...
T Consensus 63 ~~~~~~~~~l---~~~~g~~VLdIG~GsG~~t~~la~~~~~~~~V~~vE~~~~~~~~a~~~l~~~g~~~v~~~~gd~~~~ 139 (212)
T PRK13942 63 HMVAIMCELL---DLKEGMKVLEIGTGSGYHAAVVAEIVGKSGKVVTIERIPELAEKAKKTLKKLGYDNVEVIVGDGTLG 139 (212)
T ss_pred HHHHHHHHHc---CCCCcCEEEEECCcccHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCeEEEECCcccC
Confidence 4445554433 5788999999999999999999999877789999999996655555444433 5899999998765
Q ss_pred cccccCCCcEeEEEEeCCChhHHHHHHHHHhccCCCCcEEEEEE
Q 021911 205 AKYRMLVGMVDVIFSDVAQPDQARILALNASYFLKAGGHFVISI 248 (305)
Q Consensus 205 ~~~~~~~~~fD~V~~d~~~~~~~~~l~~~a~~~LkpGG~lv~s~ 248 (305)
.. ....||+|+++...+...+ .+.+.|||||+|++..
T Consensus 140 ~~---~~~~fD~I~~~~~~~~~~~----~l~~~LkpgG~lvi~~ 176 (212)
T PRK13942 140 YE---ENAPYDRIYVTAAGPDIPK----PLIEQLKDGGIMVIPV 176 (212)
T ss_pred CC---cCCCcCEEEECCCcccchH----HHHHhhCCCcEEEEEE
Confidence 32 2368999999877654443 4456899999999975
|
|
| >PF08241 Methyltransf_11: Methyltransferase domain; InterPro: IPR013216 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals | Back alignment and domain information |
|---|
Probab=99.43 E-value=5.7e-13 Score=100.32 Aligned_cols=92 Identities=23% Similarity=0.258 Sum_probs=70.8
Q ss_pred EEEecCCCccHHHHHhhhCCCcEEEEEeCChHHHHHHHHHHHcCCCeEEEEccCCCCcccccCCCcEeEEEEeCC---Ch
Q 021911 148 LYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKRTNVIPIIEDARHPAKYRMLVGMVDVIFSDVA---QP 224 (305)
Q Consensus 148 LDlG~G~G~~t~~la~~~~~~~~V~avD~s~~~~~~l~~~a~~~~nI~~~~~D~~~~~~~~~~~~~fD~V~~d~~---~~ 224 (305)
||+|||+|.++..+++. +..+|+++|+|+.+++.+.+.... .++.+++.|+.+.+ +.+++||+|++... .+
T Consensus 1 LdiG~G~G~~~~~l~~~--~~~~v~~~D~~~~~~~~~~~~~~~-~~~~~~~~d~~~l~---~~~~sfD~v~~~~~~~~~~ 74 (95)
T PF08241_consen 1 LDIGCGTGRFAAALAKR--GGASVTGIDISEEMLEQARKRLKN-EGVSFRQGDAEDLP---FPDNSFDVVFSNSVLHHLE 74 (95)
T ss_dssp EEET-TTSHHHHHHHHT--TTCEEEEEES-HHHHHHHHHHTTT-STEEEEESBTTSSS---S-TT-EEEEEEESHGGGSS
T ss_pred CEecCcCCHHHHHHHhc--cCCEEEEEeCCHHHHHHHHhcccc-cCchheeehHHhCc---cccccccccccccceeecc
Confidence 89999999999999998 567999999999544444443332 56779999998874 23689999999666 35
Q ss_pred hHHHHHHHHHhccCCCCcEEEE
Q 021911 225 DQARILALNASYFLKAGGHFVI 246 (305)
Q Consensus 225 ~~~~~l~~~a~~~LkpGG~lv~ 246 (305)
++.+++. ++.++|||||++++
T Consensus 75 ~~~~~l~-e~~rvLk~gG~l~~ 95 (95)
T PF08241_consen 75 DPEAALR-EIYRVLKPGGRLVI 95 (95)
T ss_dssp HHHHHHH-HHHHHEEEEEEEEE
T ss_pred CHHHHHH-HHHHHcCcCeEEeC
Confidence 7777777 99999999999986
|
The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Arsenite methyltransferase (2.1.1.137 from EC) which converts arsenical compounds to their methylated forms [] Biotin synthesis protein bioC, which is involved in the early stages of biotin biosyntheis [] Arginine N-methyltransferase 1, an arginine-methylating enzyme which acts on residues present in a glycine and argine-rich domain and can methylate histones [] Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Sterol 24-C-methyltransferase (2.1.1.41 from EC), shown to participate in ergosterol biosynthesis [] 3-demethylubiquinone-9 3-methyltransferase (2.1.1.64 from EC) involved in ubiquinone biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ]. ; GO: 0008168 methyltransferase activity, 0008152 metabolic process; PDB: 3CGG_B 3CCF_B 3BKW_B 2PXX_A 3I9F_A 2YQZ_B 2YR0_A 3BUS_A 3EGE_A 3G5L_B .... |
| >TIGR00537 hemK_rel_arch HemK-related putative methylase | Back alignment and domain information |
|---|
Probab=99.43 E-value=8.9e-12 Score=106.16 Aligned_cols=128 Identities=19% Similarity=0.206 Sum_probs=91.1
Q ss_pred CCCCCEEEEEecCCCccHHHHHhhhCCCcEEEEEeCChHHHHHHHHHHHcC-CCeEEEEccCCCCcccccCCCcEeEEEE
Q 021911 141 IKPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKR-TNVIPIIEDARHPAKYRMLVGMVDVIFS 219 (305)
Q Consensus 141 ~~~g~~VLDlG~G~G~~t~~la~~~~~~~~V~avD~s~~~~~~l~~~a~~~-~nI~~~~~D~~~~~~~~~~~~~fD~V~~ 219 (305)
..++.+|||+|||+|.++..++... + +|+++|+|+.+++.+.+.++.. .+++++..|+.... ..+||+|++
T Consensus 17 ~~~~~~vLdlG~G~G~~~~~l~~~~-~--~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~d~~~~~-----~~~fD~Vi~ 88 (179)
T TIGR00537 17 ELKPDDVLEIGAGTGLVAIRLKGKG-K--CILTTDINPFAVKELRENAKLNNVGLDVVMTDLFKGV-----RGKFDVILF 88 (179)
T ss_pred hcCCCeEEEeCCChhHHHHHHHhcC-C--EEEEEECCHHHHHHHHHHHHHcCCceEEEEccccccc-----CCcccEEEE
Confidence 4456799999999999999999873 2 8999999996665555544433 46888888986542 358999999
Q ss_pred eCCCh---h---------------------HHHHHHHHHhccCCCCcEEEEEEcccccCCCCchhhhHHHHHHHHHHCCC
Q 021911 220 DVAQP---D---------------------QARILALNASYFLKAGGHFVISIKANCIDSTVPAEAVFQSEVKKLQQDQF 275 (305)
Q Consensus 220 d~~~~---~---------------------~~~~l~~~a~~~LkpGG~lv~s~~~~~i~~~~~~~~v~~~~~~~l~~~Gf 275 (305)
++|.. + ...++. ++.++|||||.+++.+ .+.. +. .+.+..|++.||
T Consensus 89 n~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~~~~Lk~gG~~~~~~--~~~~---~~----~~~~~~l~~~gf 158 (179)
T TIGR00537 89 NPPYLPLEDDLRRGDWLDVAIDGGKDGRKVIDRFLD-ELPEILKEGGRVQLIQ--SSLN---GE----PDTFDKLDERGF 158 (179)
T ss_pred CCCCCCCcchhcccchhhhhhhcCCchHHHHHHHHH-hHHHhhCCCCEEEEEE--eccC---Ch----HHHHHHHHhCCC
Confidence 98831 0 233454 8999999999999987 2211 11 223577788999
Q ss_pred cEeEEeecCCC
Q 021911 276 KPFEQVTLEPF 286 (305)
Q Consensus 276 ~~~e~~~l~p~ 286 (305)
+.+.+....-+
T Consensus 159 ~~~~~~~~~~~ 169 (179)
T TIGR00537 159 RYEIVAERGLF 169 (179)
T ss_pred eEEEEEEeecC
Confidence 88876654333
|
The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. This model represents an archaeal and eukaryotic protein family that lacks an N-terminal domain found in HemK and its eubacterial homologs. It is found in a single copy in the first six completed archaeal and eukaryotic genomes. |
| >PLN02336 phosphoethanolamine N-methyltransferase | Back alignment and domain information |
|---|
Probab=99.43 E-value=4.6e-12 Score=123.83 Aligned_cols=137 Identities=21% Similarity=0.196 Sum_probs=95.1
Q ss_pred CCCCCCEEEEEecCCCccHHHHHhhhCCCcEEEEEeCChHHHHHHHHHHHcC-CCeEEEEccCCCCcccccCCCcEeEEE
Q 021911 140 WIKPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKR-TNVIPIIEDARHPAKYRMLVGMVDVIF 218 (305)
Q Consensus 140 ~~~~g~~VLDlG~G~G~~t~~la~~~~~~~~V~avD~s~~~~~~l~~~a~~~-~nI~~~~~D~~~~~~~~~~~~~fD~V~ 218 (305)
.+.++.+|||+|||+|..+..+++.+ ..+|+++|+|+.++..+.+.+... .++.+++.|+...+. ...+||+|+
T Consensus 263 ~~~~~~~vLDiGcG~G~~~~~la~~~--~~~v~gvDiS~~~l~~A~~~~~~~~~~v~~~~~d~~~~~~---~~~~fD~I~ 337 (475)
T PLN02336 263 DLKPGQKVLDVGCGIGGGDFYMAENF--DVHVVGIDLSVNMISFALERAIGRKCSVEFEVADCTKKTY---PDNSFDVIY 337 (475)
T ss_pred CCCCCCEEEEEeccCCHHHHHHHHhc--CCEEEEEECCHHHHHHHHHHhhcCCCceEEEEcCcccCCC---CCCCEEEEE
Confidence 45778899999999999999999875 468999999995544443333222 478999999876542 246899999
Q ss_pred EeCC---ChhHHHHHHHHHhccCCCCcEEEEEEcccccCCCCchhh-h----------HHHHHHHHHHCCCcEeEEee
Q 021911 219 SDVA---QPDQARILALNASYFLKAGGHFVISIKANCIDSTVPAEA-V----------FQSEVKKLQQDQFKPFEQVT 282 (305)
Q Consensus 219 ~d~~---~~~~~~~l~~~a~~~LkpGG~lv~s~~~~~i~~~~~~~~-v----------~~~~~~~l~~~Gf~~~e~~~ 282 (305)
+... .++...++. +++++|||||+|++++............. . .....+.|+++||+.++..+
T Consensus 338 s~~~l~h~~d~~~~l~-~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~l~~aGF~~i~~~d 414 (475)
T PLN02336 338 SRDTILHIQDKPALFR-SFFKWLKPGGKVLISDYCRSPGTPSPEFAEYIKQRGYDLHDVQAYGQMLKDAGFDDVIAED 414 (475)
T ss_pred ECCcccccCCHHHHHH-HHHHHcCCCeEEEEEEeccCCCCCcHHHHHHHHhcCCCCCCHHHHHHHHHHCCCeeeeeec
Confidence 9644 456777777 99999999999999873211111111110 1 11224667889999886654
|
|
| >PRK08317 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.42 E-value=9.1e-12 Score=109.76 Aligned_cols=105 Identities=30% Similarity=0.330 Sum_probs=82.5
Q ss_pred CCCCCCEEEEEecCCCccHHHHHhhhCCCcEEEEEeCChHHHHHHHHHHH-cCCCeEEEEccCCCCcccccCCCcEeEEE
Q 021911 140 WIKPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAK-KRTNVIPIIEDARHPAKYRMLVGMVDVIF 218 (305)
Q Consensus 140 ~~~~g~~VLDlG~G~G~~t~~la~~~~~~~~V~avD~s~~~~~~l~~~a~-~~~nI~~~~~D~~~~~~~~~~~~~fD~V~ 218 (305)
.+.++.+|||+|||+|.++..+++.+++.++|+++|+|+..+..+.+... ...++.+++.|+...+. ....||+|+
T Consensus 16 ~~~~~~~vLdiG~G~G~~~~~~a~~~~~~~~v~~~d~~~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~---~~~~~D~v~ 92 (241)
T PRK08317 16 AVQPGDRVLDVGCGPGNDARELARRVGPEGRVVGIDRSEAMLALAKERAAGLGPNVEFVRGDADGLPF---PDGSFDAVR 92 (241)
T ss_pred CCCCCCEEEEeCCCCCHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHhhCCCCceEEEecccccCCC---CCCCceEEE
Confidence 57788999999999999999999987667899999999954444333311 12578999999876542 246899999
Q ss_pred EeCC---ChhHHHHHHHHHhccCCCCcEEEEEE
Q 021911 219 SDVA---QPDQARILALNASYFLKAGGHFVISI 248 (305)
Q Consensus 219 ~d~~---~~~~~~~l~~~a~~~LkpGG~lv~s~ 248 (305)
++.. .+++..++. ++.++|||||+|+++.
T Consensus 93 ~~~~~~~~~~~~~~l~-~~~~~L~~gG~l~~~~ 124 (241)
T PRK08317 93 SDRVLQHLEDPARALA-EIARVLRPGGRVVVLD 124 (241)
T ss_pred EechhhccCCHHHHHH-HHHHHhcCCcEEEEEe
Confidence 8765 356777776 9999999999999876
|
|
| >PRK11207 tellurite resistance protein TehB; Provisional | Back alignment and domain information |
|---|
Probab=99.42 E-value=4.2e-12 Score=109.96 Aligned_cols=100 Identities=21% Similarity=0.204 Sum_probs=75.8
Q ss_pred CCCCCEEEEEecCCCccHHHHHhhhCCCcEEEEEeCChHHHHHHHHHHHcC--CCeEEEEccCCCCcccccCCCcEeEEE
Q 021911 141 IKPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKR--TNVIPIIEDARHPAKYRMLVGMVDVIF 218 (305)
Q Consensus 141 ~~~g~~VLDlG~G~G~~t~~la~~~~~~~~V~avD~s~~~~~~l~~~a~~~--~nI~~~~~D~~~~~~~~~~~~~fD~V~ 218 (305)
..++.+|||+|||+|..+.+||+. ..+|+++|+|+.+++.+.+.++.. .+|.+++.|+...+ ...+||+|+
T Consensus 28 ~~~~~~vLDiGcG~G~~a~~La~~---g~~V~gvD~S~~~i~~a~~~~~~~~~~~v~~~~~d~~~~~----~~~~fD~I~ 100 (197)
T PRK11207 28 VVKPGKTLDLGCGNGRNSLYLAAN---GFDVTAWDKNPMSIANLERIKAAENLDNLHTAVVDLNNLT----FDGEYDFIL 100 (197)
T ss_pred cCCCCcEEEECCCCCHHHHHHHHC---CCEEEEEeCCHHHHHHHHHHHHHcCCCcceEEecChhhCC----cCCCcCEEE
Confidence 456689999999999999999986 248999999996666555544443 56888999987653 235799999
Q ss_pred EeCC----Ch-hHHHHHHHHHhccCCCCcEEEEEE
Q 021911 219 SDVA----QP-DQARILALNASYFLKAGGHFVISI 248 (305)
Q Consensus 219 ~d~~----~~-~~~~~l~~~a~~~LkpGG~lv~s~ 248 (305)
+... .+ +...++. ++.++|||||++++.+
T Consensus 101 ~~~~~~~~~~~~~~~~l~-~i~~~LkpgG~~~~~~ 134 (197)
T PRK11207 101 STVVLMFLEAKTIPGLIA-NMQRCTKPGGYNLIVA 134 (197)
T ss_pred EecchhhCCHHHHHHHHH-HHHHHcCCCcEEEEEE
Confidence 8765 22 3455555 9999999999976644
|
|
| >PRK10258 biotin biosynthesis protein BioC; Provisional | Back alignment and domain information |
|---|
Probab=99.42 E-value=1.1e-12 Score=117.51 Aligned_cols=109 Identities=17% Similarity=0.163 Sum_probs=83.0
Q ss_pred HHHHHHHccccccCCCCCCEEEEEecCCCccHHHHHhhhCCCcEEEEEeCChHHHHHHHHHHHcC-CCeEEEEccCCCCc
Q 021911 127 KLAAAVLGGVDNIWIKPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKR-TNVIPIIEDARHPA 205 (305)
Q Consensus 127 ~l~a~ll~~l~~~~~~~g~~VLDlG~G~G~~t~~la~~~~~~~~V~avD~s~~~~~~l~~~a~~~-~nI~~~~~D~~~~~ 205 (305)
..+..++..| ...+..+|||+|||+|.++..++.. ..+|+++|+|+ .+++.++++ ..+.+++.|+...+
T Consensus 29 ~~a~~l~~~l---~~~~~~~vLDiGcG~G~~~~~l~~~---~~~v~~~D~s~----~~l~~a~~~~~~~~~~~~d~~~~~ 98 (251)
T PRK10258 29 QSADALLAML---PQRKFTHVLDAGCGPGWMSRYWRER---GSQVTALDLSP----PMLAQARQKDAADHYLAGDIESLP 98 (251)
T ss_pred HHHHHHHHhc---CccCCCeEEEeeCCCCHHHHHHHHc---CCeEEEEECCH----HHHHHHHhhCCCCCEEEcCcccCc
Confidence 3444444433 3345689999999999999998875 35899999999 666666654 34678889987754
Q ss_pred ccccCCCcEeEEEEeCC---ChhHHHHHHHHHhccCCCCcEEEEEEc
Q 021911 206 KYRMLVGMVDVIFSDVA---QPDQARILALNASYFLKAGGHFVISIK 249 (305)
Q Consensus 206 ~~~~~~~~fD~V~~d~~---~~~~~~~l~~~a~~~LkpGG~lv~s~~ 249 (305)
. ...+||+|+++.+ .++...++. ++.++|||||.|++++.
T Consensus 99 ~---~~~~fD~V~s~~~l~~~~d~~~~l~-~~~~~Lk~gG~l~~~~~ 141 (251)
T PRK10258 99 L---ATATFDLAWSNLAVQWCGNLSTALR-ELYRVVRPGGVVAFTTL 141 (251)
T ss_pred C---CCCcEEEEEECchhhhcCCHHHHHH-HHHHHcCCCeEEEEEeC
Confidence 2 3468999999877 456777787 99999999999999974
|
|
| >PRK13944 protein-L-isoaspartate O-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.42 E-value=3.2e-12 Score=111.40 Aligned_cols=102 Identities=22% Similarity=0.266 Sum_probs=79.2
Q ss_pred CCCCCCEEEEEecCCCccHHHHHhhhCCCcEEEEEeCChHHHHHHHHHHHcC---CCeEEEEccCCCCcccccCCCcEeE
Q 021911 140 WIKPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKR---TNVIPIIEDARHPAKYRMLVGMVDV 216 (305)
Q Consensus 140 ~~~~g~~VLDlG~G~G~~t~~la~~~~~~~~V~avD~s~~~~~~l~~~a~~~---~nI~~~~~D~~~~~~~~~~~~~fD~ 216 (305)
.++++.+|||+|||+|..+..+++.+++.++|+++|+++..+..+.+.+++. .++++++.|+....+. ..+||+
T Consensus 69 ~~~~~~~VLDiG~GsG~~~~~la~~~~~~g~V~~iD~~~~~~~~a~~~l~~~~~~~~v~~~~~d~~~~~~~---~~~fD~ 145 (205)
T PRK13944 69 EPRPGMKILEVGTGSGYQAAVCAEAIERRGKVYTVEIVKELAIYAAQNIERLGYWGVVEVYHGDGKRGLEK---HAPFDA 145 (205)
T ss_pred CCCCCCEEEEECcCccHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEECCcccCCcc---CCCccE
Confidence 4678899999999999999999998866779999999996655554444433 3589999998764322 368999
Q ss_pred EEEeCCChhHHHHHHHHHhccCCCCcEEEEEE
Q 021911 217 IFSDVAQPDQARILALNASYFLKAGGHFVISI 248 (305)
Q Consensus 217 V~~d~~~~~~~~~l~~~a~~~LkpGG~lv~s~ 248 (305)
|+++.+..... . ++.+.|||||+|++..
T Consensus 146 Ii~~~~~~~~~---~-~l~~~L~~gG~lvi~~ 173 (205)
T PRK13944 146 IIVTAAASTIP---S-ALVRQLKDGGVLVIPV 173 (205)
T ss_pred EEEccCcchhh---H-HHHHhcCcCcEEEEEE
Confidence 99988754333 2 5568999999999876
|
|
| >PF13659 Methyltransf_26: Methyltransferase domain; PDB: 3GJY_A 3LPM_B 2NP6_D 1AQI_B 2ADM_B 2IH2_A 2JG3_A 2IBS_D 2NP7_A 2IBT_A | Back alignment and domain information |
|---|
Probab=99.41 E-value=6.2e-13 Score=104.86 Aligned_cols=101 Identities=26% Similarity=0.252 Sum_probs=76.3
Q ss_pred CCEEEEEecCCCccHHHHHhhhCCCcEEEEEeCChHHHHHHHHHHHcC---CCeEEEEccCCCCcccccCCCcEeEEEEe
Q 021911 144 GARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKR---TNVIPIIEDARHPAKYRMLVGMVDVIFSD 220 (305)
Q Consensus 144 g~~VLDlG~G~G~~t~~la~~~~~~~~V~avD~s~~~~~~l~~~a~~~---~nI~~~~~D~~~~~~~~~~~~~fD~V~~d 220 (305)
|.+|||+|||+|.++.++++.. ..+++++|+++.++.-+...+... .++.+++.|+.+.... ....+||+|++|
T Consensus 1 g~~vlD~~~G~G~~~~~~~~~~--~~~~~gvdi~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~~~~~-~~~~~~D~Iv~n 77 (117)
T PF13659_consen 1 GDRVLDPGCGSGTFLLAALRRG--AARVTGVDIDPEAVELARRNLPRNGLDDRVEVIVGDARDLPEP-LPDGKFDLIVTN 77 (117)
T ss_dssp TEEEEEETSTTCHHHHHHHHHC--TCEEEEEESSHHHHHHHHHHCHHCTTTTTEEEEESHHHHHHHT-CTTT-EEEEEE-
T ss_pred CCEEEEcCcchHHHHHHHHHHC--CCeEEEEEECHHHHHHHHHHHHHccCCceEEEEECchhhchhh-ccCceeEEEEEC
Confidence 4689999999999999999885 569999999996555444444433 5799999999776522 235799999999
Q ss_pred CCCh-----------hHHHHHHHHHhccCCCCcEEEEEE
Q 021911 221 VAQP-----------DQARILALNASYFLKAGGHFVISI 248 (305)
Q Consensus 221 ~~~~-----------~~~~~l~~~a~~~LkpGG~lv~s~ 248 (305)
+|.. ...+++. ++.++|||+|.+++.+
T Consensus 78 pP~~~~~~~~~~~~~~~~~~~~-~~~~~L~~gG~~~~~~ 115 (117)
T PF13659_consen 78 PPYGPRSGDKAALRRLYSRFLE-AAARLLKPGGVLVFIT 115 (117)
T ss_dssp -STTSBTT----GGCHHHHHHH-HHHHHEEEEEEEEEEE
T ss_pred CCCccccccchhhHHHHHHHHH-HHHHHcCCCeEEEEEe
Confidence 9932 2345565 9999999999999987
|
... |
| >PRK14967 putative methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.41 E-value=5e-12 Score=111.56 Aligned_cols=102 Identities=25% Similarity=0.234 Sum_probs=76.5
Q ss_pred CCCCCCEEEEEecCCCccHHHHHhhhCCCcEEEEEeCChHHHHHHHHHHHcC-CCeEEEEccCCCCcccccCCCcEeEEE
Q 021911 140 WIKPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKR-TNVIPIIEDARHPAKYRMLVGMVDVIF 218 (305)
Q Consensus 140 ~~~~g~~VLDlG~G~G~~t~~la~~~~~~~~V~avD~s~~~~~~l~~~a~~~-~nI~~~~~D~~~~~~~~~~~~~fD~V~ 218 (305)
.+.++.+|||+|||+|.++..++.. ...+|+++|+|+.++..+.++++.. .++.+++.|+.... ...+||+|+
T Consensus 33 ~~~~~~~vLDlGcG~G~~~~~la~~--~~~~v~~vD~s~~~l~~a~~n~~~~~~~~~~~~~d~~~~~----~~~~fD~Vi 106 (223)
T PRK14967 33 GLGPGRRVLDLCTGSGALAVAAAAA--GAGSVTAVDISRRAVRSARLNALLAGVDVDVRRGDWARAV----EFRPFDVVV 106 (223)
T ss_pred ccCCCCeEEEecCCHHHHHHHHHHc--CCCeEEEEECCHHHHHHHHHHHHHhCCeeEEEECchhhhc----cCCCeeEEE
Confidence 4677899999999999999999876 3358999999996655544444432 35788888886532 246899999
Q ss_pred EeCCCh---h---------------------HHHHHHHHHhccCCCCcEEEEEE
Q 021911 219 SDVAQP---D---------------------QARILALNASYFLKAGGHFVISI 248 (305)
Q Consensus 219 ~d~~~~---~---------------------~~~~l~~~a~~~LkpGG~lv~s~ 248 (305)
+|+|.. . ...++. ++.++|||||+|++..
T Consensus 107 ~npPy~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~a~~~Lk~gG~l~~~~ 159 (223)
T PRK14967 107 SNPPYVPAPPDAPPSRGPARAWDAGPDGRAVLDRLCD-AAPALLAPGGSLLLVQ 159 (223)
T ss_pred ECCCCCCCCcccccccChhHhhhCCCcHHHHHHHHHH-HHHHhcCCCcEEEEEE
Confidence 998721 1 234455 8899999999999876
|
|
| >TIGR00438 rrmJ cell division protein FtsJ | Back alignment and domain information |
|---|
Probab=99.41 E-value=5.9e-12 Score=108.14 Aligned_cols=99 Identities=35% Similarity=0.355 Sum_probs=76.2
Q ss_pred CCCCCCEEEEEecCCCccHHHHHhhhCCCcEEEEEeCChHHHHHHHHHHHcCCCeEEEEccCCCCccc-----ccCCCcE
Q 021911 140 WIKPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKRTNVIPIIEDARHPAKY-----RMLVGMV 214 (305)
Q Consensus 140 ~~~~g~~VLDlG~G~G~~t~~la~~~~~~~~V~avD~s~~~~~~l~~~a~~~~nI~~~~~D~~~~~~~-----~~~~~~f 214 (305)
.++++.+|||+|||+|.++.++++.+.+.++|+++|+|+. + ..+++.+++.|+.+.... ......|
T Consensus 29 ~i~~g~~VLDiG~GtG~~~~~l~~~~~~~~~v~~vDis~~----~-----~~~~i~~~~~d~~~~~~~~~l~~~~~~~~~ 99 (188)
T TIGR00438 29 LIKPGDTVLDLGAAPGGWSQVAVEQVGGKGRVIAVDLQPM----K-----PIENVDFIRGDFTDEEVLNKIRERVGDDKV 99 (188)
T ss_pred ccCCCCEEEEecCCCCHHHHHHHHHhCCCceEEEEecccc----c-----cCCCceEEEeeCCChhHHHHHHHHhCCCCc
Confidence 4678999999999999999999998766678999999983 2 236789999998764311 1124579
Q ss_pred eEEEEeCCCh--------------hHHHHHHHHHhccCCCCcEEEEEE
Q 021911 215 DVIFSDVAQP--------------DQARILALNASYFLKAGGHFVISI 248 (305)
Q Consensus 215 D~V~~d~~~~--------------~~~~~l~~~a~~~LkpGG~lv~s~ 248 (305)
|+|+++.+.+ ++..++. ++.++|+|||++++..
T Consensus 100 D~V~~~~~~~~~g~~~~~~~~~~~~~~~~l~-~~~~~LkpgG~lvi~~ 146 (188)
T TIGR00438 100 DVVMSDAAPNISGYWDIDHLRSIDLVELALD-IAKEVLKPKGNFVVKV 146 (188)
T ss_pred cEEEcCCCCCCCCCccccHHHHHHHHHHHHH-HHHHHccCCCEEEEEE
Confidence 9999986411 1345665 8999999999999975
|
|
| >PRK11036 putative S-adenosyl-L-methionine-dependent methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.41 E-value=3.1e-12 Score=115.11 Aligned_cols=101 Identities=22% Similarity=0.240 Sum_probs=78.6
Q ss_pred CCCCEEEEEecCCCccHHHHHhhhCCCcEEEEEeCChHHHHHHHHHHHcC---CCeEEEEccCCCCcccccCCCcEeEEE
Q 021911 142 KPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKR---TNVIPIIEDARHPAKYRMLVGMVDVIF 218 (305)
Q Consensus 142 ~~g~~VLDlG~G~G~~t~~la~~~~~~~~V~avD~s~~~~~~l~~~a~~~---~nI~~~~~D~~~~~~~~~~~~~fD~V~ 218 (305)
.+..+|||+|||+|.++..+++. ..+|+++|+|+.++..+.+.++.. +++++++.|+.+.... ...+||+|+
T Consensus 43 ~~~~~vLDiGcG~G~~a~~la~~---g~~v~~vD~s~~~l~~a~~~~~~~g~~~~v~~~~~d~~~l~~~--~~~~fD~V~ 117 (255)
T PRK11036 43 PRPLRVLDAGGGEGQTAIKLAEL---GHQVILCDLSAEMIQRAKQAAEAKGVSDNMQFIHCAAQDIAQH--LETPVDLIL 117 (255)
T ss_pred CCCCEEEEeCCCchHHHHHHHHc---CCEEEEEECCHHHHHHHHHHHHhcCCccceEEEEcCHHHHhhh--cCCCCCEEE
Confidence 45689999999999999999987 258999999996655555544433 5789999998765422 246899999
Q ss_pred EeCC---ChhHHHHHHHHHhccCCCCcEEEEEE
Q 021911 219 SDVA---QPDQARILALNASYFLKAGGHFVISI 248 (305)
Q Consensus 219 ~d~~---~~~~~~~l~~~a~~~LkpGG~lv~s~ 248 (305)
+... .+++..++. ++.++|||||+|++..
T Consensus 118 ~~~vl~~~~~~~~~l~-~~~~~LkpgG~l~i~~ 149 (255)
T PRK11036 118 FHAVLEWVADPKSVLQ-TLWSVLRPGGALSLMF 149 (255)
T ss_pred ehhHHHhhCCHHHHHH-HHHHHcCCCeEEEEEE
Confidence 8766 345667777 9999999999998864
|
|
| >COG4106 Tam Trans-aconitate methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.41 E-value=2.9e-13 Score=115.73 Aligned_cols=115 Identities=21% Similarity=0.330 Sum_probs=96.5
Q ss_pred hhHHHHHHHccccccCCCCCCEEEEEecCCCccHHHHHhhhCCCcEEEEEeCChHHHHHHHHHHHcC-CCeEEEEccCCC
Q 021911 125 RSKLAAAVLGGVDNIWIKPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKR-TNVIPIIEDARH 203 (305)
Q Consensus 125 ~s~l~a~ll~~l~~~~~~~g~~VLDlG~G~G~~t~~la~~~~~~~~V~avD~s~~~~~~l~~~a~~~-~nI~~~~~D~~~ 203 (305)
++.-+..++ +++.+.+-.+|.|||||+|+.|..|++++ |...|+++|.|+ +|++.|+.+ +++.|..+|+.+
T Consensus 15 RtRPa~dLl---a~Vp~~~~~~v~DLGCGpGnsTelL~~Rw-P~A~i~GiDsS~----~Mla~Aa~rlp~~~f~~aDl~~ 86 (257)
T COG4106 15 RTRPARDLL---ARVPLERPRRVVDLGCGPGNSTELLARRW-PDAVITGIDSSP----AMLAKAAQRLPDATFEEADLRT 86 (257)
T ss_pred ccCcHHHHH---hhCCccccceeeecCCCCCHHHHHHHHhC-CCCeEeeccCCH----HHHHHHHHhCCCCceecccHhh
Confidence 334444443 44467778999999999999999999998 688999999999 888888877 899999999998
Q ss_pred CcccccCCCcEeEEEEeCC---ChhHHHHHHHHHhccCCCCcEEEEEEcccc
Q 021911 204 PAKYRMLVGMVDVIFSDVA---QPDQARILALNASYFLKAGGHFVISIKANC 252 (305)
Q Consensus 204 ~~~~~~~~~~fD~V~~d~~---~~~~~~~l~~~a~~~LkpGG~lv~s~~~~~ 252 (305)
+.+ ...+|+|++|+. .|+..++|. .....|.|||.|.+..+.+.
T Consensus 87 w~p----~~~~dllfaNAvlqWlpdH~~ll~-rL~~~L~Pgg~LAVQmPdN~ 133 (257)
T COG4106 87 WKP----EQPTDLLFANAVLQWLPDHPELLP-RLVSQLAPGGVLAVQMPDNL 133 (257)
T ss_pred cCC----CCccchhhhhhhhhhccccHHHHH-HHHHhhCCCceEEEECCCcc
Confidence 864 368999999998 578888887 88899999999999985443
|
|
| >PRK15001 SAM-dependent 23S ribosomal RNA mG1835 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.41 E-value=9.4e-12 Score=117.46 Aligned_cols=103 Identities=15% Similarity=0.050 Sum_probs=78.7
Q ss_pred CCCCCCEEEEEecCCCccHHHHHhhhCCCcEEEEEeCChHHHHHHHHHHHcC-----CCeEEEEccCCCCcccccCCCcE
Q 021911 140 WIKPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKR-----TNVIPIIEDARHPAKYRMLVGMV 214 (305)
Q Consensus 140 ~~~~g~~VLDlG~G~G~~t~~la~~~~~~~~V~avD~s~~~~~~l~~~a~~~-----~nI~~~~~D~~~~~~~~~~~~~f 214 (305)
......+|||||||+|..+..+++.. |..+|++||+|+.+++.+.++++.+ .+++++..|+.... ...+|
T Consensus 225 p~~~~~~VLDLGCGtGvi~i~la~~~-P~~~V~~vD~S~~Av~~A~~N~~~n~~~~~~~v~~~~~D~l~~~----~~~~f 299 (378)
T PRK15001 225 PENLEGEIVDLGCGNGVIGLTLLDKN-PQAKVVFVDESPMAVASSRLNVETNMPEALDRCEFMINNALSGV----EPFRF 299 (378)
T ss_pred CcccCCeEEEEeccccHHHHHHHHhC-CCCEEEEEECCHHHHHHHHHHHHHcCcccCceEEEEEccccccC----CCCCE
Confidence 34445799999999999999999885 6789999999997666665555433 25788888875432 13589
Q ss_pred eEEEEeCCCh--------hHHHHHHHHHhccCCCCcEEEEEE
Q 021911 215 DVIFSDVAQP--------DQARILALNASYFLKAGGHFVISI 248 (305)
Q Consensus 215 D~V~~d~~~~--------~~~~~l~~~a~~~LkpGG~lv~s~ 248 (305)
|+|+||+|.. ...+++. .+.++|||||.|+++.
T Consensus 300 DlIlsNPPfh~~~~~~~~ia~~l~~-~a~~~LkpGG~L~iV~ 340 (378)
T PRK15001 300 NAVLCNPPFHQQHALTDNVAWEMFH-HARRCLKINGELYIVA 340 (378)
T ss_pred EEEEECcCcccCccCCHHHHHHHHH-HHHHhcccCCEEEEEE
Confidence 9999999932 2345565 8999999999999996
|
|
| >PF01135 PCMT: Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT); InterPro: IPR000682 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (2 | Back alignment and domain information |
|---|
Probab=99.40 E-value=9.6e-13 Score=114.78 Aligned_cols=112 Identities=29% Similarity=0.368 Sum_probs=81.7
Q ss_pred HHHHHHHccccccCCCCCCEEEEEecCCCccHHHHHhhhCCCcEEEEEeCChHHHHHHHHHHHcC--CCeEEEEccCCCC
Q 021911 127 KLAAAVLGGVDNIWIKPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKR--TNVIPIIEDARHP 204 (305)
Q Consensus 127 ~l~a~ll~~l~~~~~~~g~~VLDlG~G~G~~t~~la~~~~~~~~V~avD~s~~~~~~l~~~a~~~--~nI~~~~~D~~~~ 204 (305)
.+.+.+++.| .++|+++|||||||+|+.+..||.++++.+.|++||.++.......+..+.. .||.+++.|....
T Consensus 59 ~~~a~~l~~L---~l~pg~~VLeIGtGsGY~aAlla~lvg~~g~Vv~vE~~~~l~~~A~~~l~~~~~~nv~~~~gdg~~g 135 (209)
T PF01135_consen 59 SMVARMLEAL---DLKPGDRVLEIGTGSGYQAALLAHLVGPVGRVVSVERDPELAERARRNLARLGIDNVEVVVGDGSEG 135 (209)
T ss_dssp HHHHHHHHHT---TC-TT-EEEEES-TTSHHHHHHHHHHSTTEEEEEEESBHHHHHHHHHHHHHHTTHSEEEEES-GGGT
T ss_pred HHHHHHHHHH---hcCCCCEEEEecCCCcHHHHHHHHhcCccceEEEECccHHHHHHHHHHHHHhccCceeEEEcchhhc
Confidence 4566665555 5899999999999999999999999988889999999994443333333321 5899999998665
Q ss_pred cccccCCCcEeEEEEeCCChhHHHHHHHHHhccCCCCcEEEEEE
Q 021911 205 AKYRMLVGMVDVIFSDVAQPDQARILALNASYFLKAGGHFVISI 248 (305)
Q Consensus 205 ~~~~~~~~~fD~V~~d~~~~~~~~~l~~~a~~~LkpGG~lv~s~ 248 (305)
.+. ..+||+|++..+.+.....+. +.||+||+|++..
T Consensus 136 ~~~---~apfD~I~v~~a~~~ip~~l~----~qL~~gGrLV~pi 172 (209)
T PF01135_consen 136 WPE---EAPFDRIIVTAAVPEIPEALL----EQLKPGGRLVAPI 172 (209)
T ss_dssp TGG---G-SEEEEEESSBBSS--HHHH----HTEEEEEEEEEEE
T ss_pred ccc---CCCcCEEEEeeccchHHHHHH----HhcCCCcEEEEEE
Confidence 432 368999999988776554444 6899999999987
|
1.1.77 from EC) (PCMT) [] (which is also known as L-isoaspartyl protein carboxyl methyltransferase) is an enzyme that catalyses the transfer of a methyl group from S-adenosylmethionine to the free carboxyl groups of D-aspartyl or L-isoaspartyl residues in a variety of peptides and proteins. The enzyme does not act on normal L-aspartyl residues L-isoaspartyl and D-aspartyl are the products of the spontaneous deamidation and/or isomerisation of normal L-aspartyl and L-asparaginyl residues in proteins. PCMT plays a role in the repair and/or degradation of these damaged proteins; the enzymatic methyl esterification of the abnormal residues can lead to their conversion to normal L-aspartyl residues. The SAM domain is present in most of these proteins.; GO: 0004719 protein-L-isoaspartate (D-aspartate) O-methyltransferase activity, 0006464 protein modification process; PDB: 3LBF_A 1DL5_B 1JG3_B 1JG2_A 1JG1_A 1JG4_A 2YXE_A 2PBF_B 1VBF_C 1R18_A .... |
| >TIGR03534 RF_mod_PrmC protein-(glutamine-N5) methyltransferase, release factor-specific | Back alignment and domain information |
|---|
Probab=99.40 E-value=1.4e-11 Score=109.92 Aligned_cols=140 Identities=26% Similarity=0.270 Sum_probs=96.8
Q ss_pred CchhhHHHHHHHccccccCCCCCCEEEEEecCCCccHHHHHhhhCCCcEEEEEeCChHHHHHHHHHHHcC--CCeEEEEc
Q 021911 122 NPFRSKLAAAVLGGVDNIWIKPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKR--TNVIPIIE 199 (305)
Q Consensus 122 ~~~~s~l~a~ll~~l~~~~~~~g~~VLDlG~G~G~~t~~la~~~~~~~~V~avD~s~~~~~~l~~~a~~~--~nI~~~~~ 199 (305)
.|....+...++..+. ....+|||+|||+|.++..++..+ +...|+++|+|+.+++.+.+.++.. .++.+++.
T Consensus 70 ~~~~~~l~~~~l~~~~----~~~~~ilDig~G~G~~~~~l~~~~-~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~ 144 (251)
T TIGR03534 70 RPDTEELVEAALERLK----KGPLRVLDLGTGSGAIALALAKER-PDARVTAVDISPEALAVARKNAARLGLDNVTFLQS 144 (251)
T ss_pred CCChHHHHHHHHHhcc----cCCCeEEEEeCcHhHHHHHHHHHC-CCCEEEEEECCHHHHHHHHHHHHHcCCCeEEEEEC
Confidence 3444555555554332 234699999999999999999875 5679999999997766665555543 47999999
Q ss_pred cCCCCcccccCCCcEeEEEEeCCCh----------h-------------------HHHHHHHHHhccCCCCcEEEEEEcc
Q 021911 200 DARHPAKYRMLVGMVDVIFSDVAQP----------D-------------------QARILALNASYFLKAGGHFVISIKA 250 (305)
Q Consensus 200 D~~~~~~~~~~~~~fD~V~~d~~~~----------~-------------------~~~~l~~~a~~~LkpGG~lv~s~~~ 250 (305)
|+.+.. ...+||+|++|+|.. + ...++. ++.++|+|+|.+++.+..
T Consensus 145 d~~~~~----~~~~fD~Vi~npPy~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~i~-~~~~~L~~gG~~~~~~~~ 219 (251)
T TIGR03534 145 DWFEPL----PGGKFDLIVSNPPYIPEADIHLLDPEVRFHEPRLALFGGEDGLDFYRRIIA-QAPRLLKPGGWLLLEIGY 219 (251)
T ss_pred chhccC----cCCceeEEEECCCCCchhhhhhcChhhhhcCCHHHHcCCCcHHHHHHHHHH-HHHHhcccCCEEEEEECc
Confidence 987642 246899999998821 0 113444 899999999999998611
Q ss_pred cccCCCCchhhhHHHHHHHHHHCCCcEeEEe
Q 021911 251 NCIDSTVPAEAVFQSEVKKLQQDQFKPFEQV 281 (305)
Q Consensus 251 ~~i~~~~~~~~v~~~~~~~l~~~Gf~~~e~~ 281 (305)
.. .....+.|++.+|+.++..
T Consensus 220 ------~~----~~~~~~~l~~~gf~~v~~~ 240 (251)
T TIGR03534 220 ------DQ----GEAVRALFEAAGFADVETR 240 (251)
T ss_pred ------cH----HHHHHHHHHhCCCCceEEE
Confidence 11 1222455677899866543
|
Members of this protein family are HemK (PrmC), a protein once thought to be involved in heme biosynthesis but now recognized to be a protein-glutamine methyltransferase that modifies the peptide chain release factors. All members of the seed alignment are encoded next to the release factor 1 gene (prfA) and confirmed by phylogenetic analysis. SIMBAL analysis (manuscript in prep.) shows the motif [LIV]PRx[DE]TE (in Escherichia coli, IPRPDTE) confers specificity for the release factors rather than for ribosomal protein L3. |
| >PF03848 TehB: Tellurite resistance protein TehB; InterPro: IPR015985 Tellurite resistance protein TehB is part of a tellurite-reducing operon tehA and tehB | Back alignment and domain information |
|---|
Probab=99.40 E-value=3.2e-12 Score=109.59 Aligned_cols=100 Identities=22% Similarity=0.217 Sum_probs=76.6
Q ss_pred CCCCEEEEEecCCCccHHHHHhhhCCCcEEEEEeCChHHHHHHHHHHHcC-CCeEEEEccCCCCcccccCCCcEeEEEEe
Q 021911 142 KPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKR-TNVIPIIEDARHPAKYRMLVGMVDVIFSD 220 (305)
Q Consensus 142 ~~g~~VLDlG~G~G~~t~~la~~~~~~~~V~avD~s~~~~~~l~~~a~~~-~nI~~~~~D~~~~~~~~~~~~~fD~V~~d 220 (305)
-+..++||||||.|..+..||+. ...|+|+|+|+.+++.+.+.+++. -+|...+.|+.+.. ....||+|++.
T Consensus 29 ~~~g~~LDlgcG~GRNalyLA~~---G~~VtAvD~s~~al~~l~~~a~~~~l~i~~~~~Dl~~~~----~~~~yD~I~st 101 (192)
T PF03848_consen 29 LKPGKALDLGCGEGRNALYLASQ---GFDVTAVDISPVALEKLQRLAEEEGLDIRTRVADLNDFD----FPEEYDFIVST 101 (192)
T ss_dssp S-SSEEEEES-TTSHHHHHHHHT---T-EEEEEESSHHHHHHHHHHHHHTT-TEEEEE-BGCCBS-----TTTEEEEEEE
T ss_pred cCCCcEEEcCCCCcHHHHHHHHC---CCeEEEEECCHHHHHHHHHHHhhcCceeEEEEecchhcc----ccCCcCEEEEE
Confidence 34579999999999999999998 358999999999988888887765 46899999987764 24689999985
Q ss_pred CC----Chh-HHHHHHHHHhccCCCCcEEEEEEc
Q 021911 221 VA----QPD-QARILALNASYFLKAGGHFVISIK 249 (305)
Q Consensus 221 ~~----~~~-~~~~l~~~a~~~LkpGG~lv~s~~ 249 (305)
.. .++ ..+++. ++...++|||++++.+.
T Consensus 102 ~v~~fL~~~~~~~i~~-~m~~~~~pGG~~li~~~ 134 (192)
T PF03848_consen 102 VVFMFLQRELRPQIIE-NMKAATKPGGYNLIVTF 134 (192)
T ss_dssp SSGGGS-GGGHHHHHH-HHHHTEEEEEEEEEEEE
T ss_pred EEeccCCHHHHHHHHH-HHHhhcCCcEEEEEEEe
Confidence 44 344 444555 99999999999998663
|
When present in high copy number, TehB is responsible for potassium tellurite resistance, probably by increasing the reduction rate of tellurite to metallic tellurium within the bacterium. TehB is a cytoplasmic protein which possesses three conserved motifs (I, II, and III) found in S-adenosyl-L-methionine (SAM)-dependent non-nucleic acid methyltransferases []. Conformational changes in TehB are observed upon binding of both tellurite and SAM, suggesting that TehB utilises a methyltransferase activity in the detoxification of tellurite. This entry represents the methyltransferase domain found in all TehB proteins.; PDB: 2KW5_A 3MER_B 3M70_A 2I6G_A 4DQ0_D 2XVA_B 2XVM_A. |
| >PRK15068 tRNA mo(5)U34 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.40 E-value=1e-11 Score=115.50 Aligned_cols=136 Identities=18% Similarity=0.185 Sum_probs=95.0
Q ss_pred CCCCCEEEEEecCCCccHHHHHhhhCCCcEEEEEeCChHHHHHHHHHHH---cCCCeEEEEccCCCCcccccCCCcEeEE
Q 021911 141 IKPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAK---KRTNVIPIIEDARHPAKYRMLVGMVDVI 217 (305)
Q Consensus 141 ~~~g~~VLDlG~G~G~~t~~la~~~~~~~~V~avD~s~~~~~~l~~~a~---~~~nI~~~~~D~~~~~~~~~~~~~fD~V 217 (305)
+.++.+|||||||+|.++..++.. + ...|+++|+|+..+.......+ ...+|.++..|+.+.+. ..+||+|
T Consensus 120 ~l~g~~VLDIGCG~G~~~~~la~~-g-~~~V~GiD~S~~~l~q~~a~~~~~~~~~~i~~~~~d~e~lp~----~~~FD~V 193 (322)
T PRK15068 120 PLKGRTVLDVGCGNGYHMWRMLGA-G-AKLVVGIDPSQLFLCQFEAVRKLLGNDQRAHLLPLGIEQLPA----LKAFDTV 193 (322)
T ss_pred CCCCCEEEEeccCCcHHHHHHHHc-C-CCEEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEeCCHHHCCC----cCCcCEE
Confidence 346789999999999999999987 3 3479999999965543222221 12579999999877642 4689999
Q ss_pred EEeCC---ChhHHHHHHHHHhccCCCCcEEEEEEcccccCCCC-----chh-------h----hHHHHHHHHHHCCCcEe
Q 021911 218 FSDVA---QPDQARILALNASYFLKAGGHFVISIKANCIDSTV-----PAE-------A----VFQSEVKKLQQDQFKPF 278 (305)
Q Consensus 218 ~~d~~---~~~~~~~l~~~a~~~LkpGG~lv~s~~~~~i~~~~-----~~~-------~----v~~~~~~~l~~~Gf~~~ 278 (305)
+|... ..+....+. ++++.|||||.|++++. .++... +.. . -......+|+++||+.+
T Consensus 194 ~s~~vl~H~~dp~~~L~-~l~~~LkpGG~lvl~~~--~i~~~~~~~l~p~~~y~~~~~~~~lps~~~l~~~L~~aGF~~i 270 (322)
T PRK15068 194 FSMGVLYHRRSPLDHLK-QLKDQLVPGGELVLETL--VIDGDENTVLVPGDRYAKMRNVYFIPSVPALKNWLERAGFKDV 270 (322)
T ss_pred EECChhhccCCHHHHHH-HHHHhcCCCcEEEEEEE--EecCCCccccCchhHHhcCccceeCCCHHHHHHHHHHcCCceE
Confidence 98544 345667777 99999999999999752 111100 000 0 11233577899999999
Q ss_pred EEeecCC
Q 021911 279 EQVTLEP 285 (305)
Q Consensus 279 e~~~l~p 285 (305)
++++..+
T Consensus 271 ~~~~~~~ 277 (322)
T PRK15068 271 RIVDVSV 277 (322)
T ss_pred EEEeCCC
Confidence 8887655
|
|
| >PRK09328 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.39 E-value=3.3e-11 Score=109.23 Aligned_cols=151 Identities=25% Similarity=0.244 Sum_probs=100.9
Q ss_pred CchhhHHHHHHHccccccCCCCCCEEEEEecCCCccHHHHHhhhCCCcEEEEEeCChHHHHHHHHHHH-c-CCCeEEEEc
Q 021911 122 NPFRSKLAAAVLGGVDNIWIKPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAK-K-RTNVIPIIE 199 (305)
Q Consensus 122 ~~~~s~l~a~ll~~l~~~~~~~g~~VLDlG~G~G~~t~~la~~~~~~~~V~avD~s~~~~~~l~~~a~-~-~~nI~~~~~ 199 (305)
.|....++..++.. ....+..+|||+|||+|..+..++..+ +..+|+++|+|+.+++.+.+.+. . ..++.+++.
T Consensus 90 r~~te~l~~~~~~~---~~~~~~~~vLDiG~GsG~~~~~la~~~-~~~~v~~iDis~~~l~~a~~n~~~~~~~~i~~~~~ 165 (275)
T PRK09328 90 RPETEELVEWALEA---LLLKEPLRVLDLGTGSGAIALALAKER-PDAEVTAVDISPEALAVARRNAKHGLGARVEFLQG 165 (275)
T ss_pred CCCcHHHHHHHHHh---ccccCCCEEEEEcCcHHHHHHHHHHHC-CCCEEEEEECCHHHHHHHHHHHHhCCCCcEEEEEc
Confidence 34444555555422 234567899999999999999999986 56799999999977666555554 1 157999999
Q ss_pred cCCCCcccccCCCcEeEEEEeCCCh-----------------------------hHHHHHHHHHhccCCCCcEEEEEEcc
Q 021911 200 DARHPAKYRMLVGMVDVIFSDVAQP-----------------------------DQARILALNASYFLKAGGHFVISIKA 250 (305)
Q Consensus 200 D~~~~~~~~~~~~~fD~V~~d~~~~-----------------------------~~~~~l~~~a~~~LkpGG~lv~s~~~ 250 (305)
|+..... ..+||+|++|+|.. ....++. ++.++|||||++++.+..
T Consensus 166 d~~~~~~----~~~fD~Iv~npPy~~~~~~~~~~~~v~~~ep~~al~~g~~g~~~~~~~~~-~~~~~Lk~gG~l~~e~g~ 240 (275)
T PRK09328 166 DWFEPLP----GGRFDLIVSNPPYIPEADIHLLQPEVRDHEPHLALFGGEDGLDFYRRIIE-QAPRYLKPGGWLLLEIGY 240 (275)
T ss_pred cccCcCC----CCceeEEEECCCcCCcchhhhCCchhhhcCCchhhcCCCCHHHHHHHHHH-HHHHhcccCCEEEEEECc
Confidence 9865431 36899999998821 1233444 788999999999997610
Q ss_pred cccCCCCchhhhHHHHHHHHHHCCCcEeEEeecCCCCCceEE
Q 021911 251 NCIDSTVPAEAVFQSEVKKLQQDQFKPFEQVTLEPFERDHAC 292 (305)
Q Consensus 251 ~~i~~~~~~~~v~~~~~~~l~~~Gf~~~e~~~l~p~~~~~~~ 292 (305)
.. .....+.+++.||..++.. .+...++.++
T Consensus 241 -------~~---~~~~~~~l~~~gf~~v~~~-~d~~~~~r~~ 271 (275)
T PRK09328 241 -------DQ---GEAVRALLAAAGFADVETR-KDLAGRDRVV 271 (275)
T ss_pred -------hH---HHHHHHHHHhCCCceeEEe-cCCCCCceEE
Confidence 11 1122345567899855543 2333344443
|
|
| >PRK00517 prmA ribosomal protein L11 methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.39 E-value=1.7e-11 Score=110.10 Aligned_cols=133 Identities=19% Similarity=0.215 Sum_probs=88.3
Q ss_pred CCCCCEEEEEecCCCccHHHHHhhhCCCcEEEEEeCChHHHHHHHHHHHcCCCeEEEEccCCCCcccccCCCcEeEEEEe
Q 021911 141 IKPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKRTNVIPIIEDARHPAKYRMLVGMVDVIFSD 220 (305)
Q Consensus 141 ~~~g~~VLDlG~G~G~~t~~la~~~~~~~~V~avD~s~~~~~~l~~~a~~~~nI~~~~~D~~~~~~~~~~~~~fD~V~~d 220 (305)
+.++.+|||+|||+|..+..++.. + ...|+++|+|+.+++.+.++++.+ ++. +....... ..+||+|+++
T Consensus 117 ~~~~~~VLDiGcGsG~l~i~~~~~-g-~~~v~giDis~~~l~~A~~n~~~~-~~~----~~~~~~~~---~~~fD~Vvan 186 (250)
T PRK00517 117 VLPGKTVLDVGCGSGILAIAAAKL-G-AKKVLAVDIDPQAVEAARENAELN-GVE----LNVYLPQG---DLKADVIVAN 186 (250)
T ss_pred cCCCCEEEEeCCcHHHHHHHHHHc-C-CCeEEEEECCHHHHHHHHHHHHHc-CCC----ceEEEccC---CCCcCEEEEc
Confidence 467899999999999988877664 3 347999999996666555555443 221 00001100 1279999999
Q ss_pred CCChhHHHHHHHHHhccCCCCcEEEEEEcccccCCCCchhhhHHHHHHHHHHCCCcEeEEeecCCCCCceEEEEEEE
Q 021911 221 VAQPDQARILALNASYFLKAGGHFVISIKANCIDSTVPAEAVFQSEVKKLQQDQFKPFEQVTLEPFERDHACVVGGY 297 (305)
Q Consensus 221 ~~~~~~~~~l~~~a~~~LkpGG~lv~s~~~~~i~~~~~~~~v~~~~~~~l~~~Gf~~~e~~~l~p~~~~~~~vv~~~ 297 (305)
........++. ++.++|||||+|+++.. . . .........+++.||++.+... ..++..+++++
T Consensus 187 i~~~~~~~l~~-~~~~~LkpgG~lilsgi--~--~-----~~~~~v~~~l~~~Gf~~~~~~~----~~~W~~~~~~~ 249 (250)
T PRK00517 187 ILANPLLELAP-DLARLLKPGGRLILSGI--L--E-----EQADEVLEAYEEAGFTLDEVLE----RGEWVALVGKK 249 (250)
T ss_pred CcHHHHHHHHH-HHHHhcCCCcEEEEEEC--c--H-----hhHHHHHHHHHHCCCEEEEEEE----eCCEEEEEEEe
Confidence 87655556665 89999999999999861 1 0 0112234667889999887654 34456666654
|
|
| >PLN02396 hexaprenyldihydroxybenzoate methyltransferase | Back alignment and domain information |
|---|
Probab=99.39 E-value=7.8e-12 Score=115.88 Aligned_cols=101 Identities=15% Similarity=0.118 Sum_probs=77.9
Q ss_pred CCCCEEEEEecCCCccHHHHHhhhCCCcEEEEEeCChHHHHHHHHHHHcC---CCeEEEEccCCCCcccccCCCcEeEEE
Q 021911 142 KPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKR---TNVIPIIEDARHPAKYRMLVGMVDVIF 218 (305)
Q Consensus 142 ~~g~~VLDlG~G~G~~t~~la~~~~~~~~V~avD~s~~~~~~l~~~a~~~---~nI~~~~~D~~~~~~~~~~~~~fD~V~ 218 (305)
.++.+|||||||+|.++..++.. ..+|++||+|+.+++.+.+.+... .+|.+++.|+.+.+. ...+||+|+
T Consensus 130 ~~g~~ILDIGCG~G~~s~~La~~---g~~V~GID~s~~~i~~Ar~~~~~~~~~~~i~~~~~dae~l~~---~~~~FD~Vi 203 (322)
T PLN02396 130 FEGLKFIDIGCGGGLLSEPLARM---GATVTGVDAVDKNVKIARLHADMDPVTSTIEYLCTTAEKLAD---EGRKFDAVL 203 (322)
T ss_pred CCCCEEEEeeCCCCHHHHHHHHc---CCEEEEEeCCHHHHHHHHHHHHhcCcccceeEEecCHHHhhh---ccCCCCEEE
Confidence 46789999999999999999864 358999999995554444333322 379999999876542 246899999
Q ss_pred EeCC---ChhHHHHHHHHHhccCCCCcEEEEEEc
Q 021911 219 SDVA---QPDQARILALNASYFLKAGGHFVISIK 249 (305)
Q Consensus 219 ~d~~---~~~~~~~l~~~a~~~LkpGG~lv~s~~ 249 (305)
+... .++...++. ++.++|||||.|++++.
T Consensus 204 ~~~vLeHv~d~~~~L~-~l~r~LkPGG~liist~ 236 (322)
T PLN02396 204 SLEVIEHVANPAEFCK-SLSALTIPNGATVLSTI 236 (322)
T ss_pred EhhHHHhcCCHHHHHH-HHHHHcCCCcEEEEEEC
Confidence 8554 346667777 99999999999999974
|
|
| >PRK15451 tRNA cmo(5)U34 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.39 E-value=4.8e-12 Score=113.44 Aligned_cols=103 Identities=23% Similarity=0.284 Sum_probs=78.9
Q ss_pred CCCCCEEEEEecCCCccHHHHHhhh-CCCcEEEEEeCChHHHHHHHHHHHcC---CCeEEEEccCCCCcccccCCCcEeE
Q 021911 141 IKPGARVLYLGAASGTTVSHVSDIV-GPNGVVYAVEFSHRSGRDLVNMAKKR---TNVIPIIEDARHPAKYRMLVGMVDV 216 (305)
Q Consensus 141 ~~~g~~VLDlG~G~G~~t~~la~~~-~~~~~V~avD~s~~~~~~l~~~a~~~---~nI~~~~~D~~~~~~~~~~~~~fD~ 216 (305)
+.++.+|||+|||+|..+..++..+ .+..+|++||+|+.+++.+.+.+... .++.+++.|+.+.+ ...+|+
T Consensus 54 ~~~~~~vLDlGcGtG~~~~~l~~~~~~~~~~v~gvD~S~~ml~~A~~~~~~~~~~~~v~~~~~d~~~~~-----~~~~D~ 128 (247)
T PRK15451 54 VQPGTQVYDLGCSLGAATLSVRRNIHHDNCKIIAIDNSPAMIERCRRHIDAYKAPTPVDVIEGDIRDIA-----IENASM 128 (247)
T ss_pred CCCCCEEEEEcccCCHHHHHHHHhcCCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEeCChhhCC-----CCCCCE
Confidence 4678999999999999999998854 36789999999996655555544432 47999999987653 245899
Q ss_pred EEEeCC----Ch-hHHHHHHHHHhccCCCCcEEEEEEc
Q 021911 217 IFSDVA----QP-DQARILALNASYFLKAGGHFVISIK 249 (305)
Q Consensus 217 V~~d~~----~~-~~~~~l~~~a~~~LkpGG~lv~s~~ 249 (305)
|+++.. .+ +...++. ++++.|||||.|+++.+
T Consensus 129 vv~~~~l~~l~~~~~~~~l~-~i~~~LkpGG~l~l~e~ 165 (247)
T PRK15451 129 VVLNFTLQFLEPSERQALLD-KIYQGLNPGGALVLSEK 165 (247)
T ss_pred EehhhHHHhCCHHHHHHHHH-HHHHhcCCCCEEEEEEe
Confidence 998654 22 3455665 99999999999999873
|
|
| >TIGR00452 methyltransferase, putative | Back alignment and domain information |
|---|
Probab=99.39 E-value=1e-11 Score=114.60 Aligned_cols=137 Identities=15% Similarity=0.114 Sum_probs=93.6
Q ss_pred CCCCCCEEEEEecCCCccHHHHHhhhCCCcEEEEEeCChHHHHHHHHHHH---cCCCeEEEEccCCCCcccccCCCcEeE
Q 021911 140 WIKPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAK---KRTNVIPIIEDARHPAKYRMLVGMVDV 216 (305)
Q Consensus 140 ~~~~g~~VLDlG~G~G~~t~~la~~~~~~~~V~avD~s~~~~~~l~~~a~---~~~nI~~~~~D~~~~~~~~~~~~~fD~ 216 (305)
...++.+|||+|||+|.++..++.. + ...|++||+|+.++..+....+ ...++.++..|+.+.+. ..+||+
T Consensus 118 ~~~~g~~VLDvGCG~G~~~~~~~~~-g-~~~v~GiDpS~~ml~q~~~~~~~~~~~~~v~~~~~~ie~lp~----~~~FD~ 191 (314)
T TIGR00452 118 SPLKGRTILDVGCGSGYHMWRMLGH-G-AKSLVGIDPTVLFLCQFEAVRKLLDNDKRAILEPLGIEQLHE----LYAFDT 191 (314)
T ss_pred CCCCCCEEEEeccCCcHHHHHHHHc-C-CCEEEEEcCCHHHHHHHHHHHHHhccCCCeEEEECCHHHCCC----CCCcCE
Confidence 4566899999999999999888876 2 3479999999965443222111 12567888888766543 248999
Q ss_pred EEEeCC---ChhHHHHHHHHHhccCCCCcEEEEEEcccccCCCCc----hhh--------h----HHHHHHHHHHCCCcE
Q 021911 217 IFSDVA---QPDQARILALNASYFLKAGGHFVISIKANCIDSTVP----AEA--------V----FQSEVKKLQQDQFKP 277 (305)
Q Consensus 217 V~~d~~---~~~~~~~l~~~a~~~LkpGG~lv~s~~~~~i~~~~~----~~~--------v----~~~~~~~l~~~Gf~~ 277 (305)
|+|... .++....|. ++++.|||||.|++++. .++...+ +.. . ......+|++.||+.
T Consensus 192 V~s~gvL~H~~dp~~~L~-el~r~LkpGG~Lvletl--~i~g~~~~~l~p~~ry~k~~nv~flpS~~~L~~~L~~aGF~~ 268 (314)
T TIGR00452 192 VFSMGVLYHRKSPLEHLK-QLKHQLVIKGELVLETL--VIDGDLNTVLVPKDRYAKMKNVYFIPSVSALKNWLEKVGFEN 268 (314)
T ss_pred EEEcchhhccCCHHHHHH-HHHHhcCCCCEEEEEEE--EecCccccccCchHHHHhccccccCCCHHHHHHHHHHCCCeE
Confidence 998665 356667777 99999999999999862 1211110 000 0 122246778999999
Q ss_pred eEEeecCC
Q 021911 278 FEQVTLEP 285 (305)
Q Consensus 278 ~e~~~l~p 285 (305)
++++....
T Consensus 269 V~i~~~~~ 276 (314)
T TIGR00452 269 FRILDVLK 276 (314)
T ss_pred EEEEeccC
Confidence 98876544
|
Known examples to date are restricted to the proteobacteria. |
| >PRK07402 precorrin-6B methylase; Provisional | Back alignment and domain information |
|---|
Probab=99.38 E-value=1.2e-11 Score=107.02 Aligned_cols=130 Identities=19% Similarity=0.224 Sum_probs=89.0
Q ss_pred CCCCCCEEEEEecCCCccHHHHHhhhCCCcEEEEEeCChHHHHHHHHHHHcC--CCeEEEEccCCCCcccccCCCcEeEE
Q 021911 140 WIKPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKR--TNVIPIIEDARHPAKYRMLVGMVDVI 217 (305)
Q Consensus 140 ~~~~g~~VLDlG~G~G~~t~~la~~~~~~~~V~avD~s~~~~~~l~~~a~~~--~nI~~~~~D~~~~~~~~~~~~~fD~V 217 (305)
.+.++.+|||+|||+|.++..++... +.++|+++|+|+.++..+.+++++. .++++++.|+..... .....+|.|
T Consensus 37 ~~~~~~~VLDiG~G~G~~~~~la~~~-~~~~V~~vD~s~~~~~~a~~n~~~~~~~~v~~~~~d~~~~~~--~~~~~~d~v 113 (196)
T PRK07402 37 RLEPDSVLWDIGAGTGTIPVEAGLLC-PKGRVIAIERDEEVVNLIRRNCDRFGVKNVEVIEGSAPECLA--QLAPAPDRV 113 (196)
T ss_pred CCCCCCEEEEeCCCCCHHHHHHHHHC-CCCEEEEEeCCHHHHHHHHHHHHHhCCCCeEEEECchHHHHh--hCCCCCCEE
Confidence 56788999999999999999998764 5679999999997766666555443 579999999854321 122356888
Q ss_pred EEeCCChhHHHHHHHHHhccCCCCcEEEEEEcccccCCCCchhhhHHHHHHHHHHCCCcEeEE
Q 021911 218 FSDVAQPDQARILALNASYFLKAGGHFVISIKANCIDSTVPAEAVFQSEVKKLQQDQFKPFEQ 280 (305)
Q Consensus 218 ~~d~~~~~~~~~l~~~a~~~LkpGG~lv~s~~~~~i~~~~~~~~v~~~~~~~l~~~Gf~~~e~ 280 (305)
+++... ....++. ++.++|+|||+|++.+. . ........+..+.++..+++++++
T Consensus 114 ~~~~~~-~~~~~l~-~~~~~LkpgG~li~~~~--~----~~~~~~~~~~~~~~~~~~~~~~~~ 168 (196)
T PRK07402 114 CIEGGR-PIKEILQ-AVWQYLKPGGRLVATAS--S----LEGLYAISEGLAQLQARNIEVVQA 168 (196)
T ss_pred EEECCc-CHHHHHH-HHHHhcCCCeEEEEEee--c----HHHHHHHHHHHHhcCCCCceEEEE
Confidence 776543 3345665 89999999999999872 1 111111223334444556776664
|
|
| >TIGR00740 methyltransferase, putative | Back alignment and domain information |
|---|
Probab=99.37 E-value=1.7e-11 Score=109.23 Aligned_cols=102 Identities=19% Similarity=0.262 Sum_probs=78.1
Q ss_pred CCCCCEEEEEecCCCccHHHHHhhhC-CCcEEEEEeCChHHHHHHHHHHHcC---CCeEEEEccCCCCcccccCCCcEeE
Q 021911 141 IKPGARVLYLGAASGTTVSHVSDIVG-PNGVVYAVEFSHRSGRDLVNMAKKR---TNVIPIIEDARHPAKYRMLVGMVDV 216 (305)
Q Consensus 141 ~~~g~~VLDlG~G~G~~t~~la~~~~-~~~~V~avD~s~~~~~~l~~~a~~~---~nI~~~~~D~~~~~~~~~~~~~fD~ 216 (305)
+.++.+|||+|||+|..+..+++.+. +.++|+++|+|+.++..+.+.++.. .++.+++.|+.+.+ ...+|+
T Consensus 51 ~~~~~~iLDlGcG~G~~~~~l~~~~~~p~~~v~gvD~s~~ml~~a~~~~~~~~~~~~v~~~~~d~~~~~-----~~~~d~ 125 (239)
T TIGR00740 51 VTPDSNVYDLGCSRGAATLSARRNINQPNVKIIGIDNSQPMVERCRQHIAAYHSEIPVEILCNDIRHVE-----IKNASM 125 (239)
T ss_pred CCCCCEEEEecCCCCHHHHHHHHhcCCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEECChhhCC-----CCCCCE
Confidence 45788999999999999999998753 5789999999995555544444332 46899999998764 235888
Q ss_pred EEEeCC----Ch-hHHHHHHHHHhccCCCCcEEEEEE
Q 021911 217 IFSDVA----QP-DQARILALNASYFLKAGGHFVISI 248 (305)
Q Consensus 217 V~~d~~----~~-~~~~~l~~~a~~~LkpGG~lv~s~ 248 (305)
|++..+ .+ +...++. ++++.|||||.|+++.
T Consensus 126 v~~~~~l~~~~~~~~~~~l~-~i~~~LkpgG~l~i~d 161 (239)
T TIGR00740 126 VILNFTLQFLPPEDRIALLT-KIYEGLNPNGVLVLSE 161 (239)
T ss_pred EeeecchhhCCHHHHHHHHH-HHHHhcCCCeEEEEee
Confidence 888655 22 3455565 9999999999999986
|
A simple BLAST search finds all members of this family and weaker hits to a large number of known and predicted methyltransferases. A single iteration with PSI-BLAST, keeping only clear members of the family, leads to a large number of highly significant hits to a set of known and predicted methyltransferases with a large repertoire of different specifities. This model is restricted to a subfamily found so far only in the Proteobacteria, sharing consistent length, full-length homology, and on average better than 35 % identity. It is reasonable to predict equivalent function within this subfamily. |
| >TIGR02072 BioC biotin biosynthesis protein BioC | Back alignment and domain information |
|---|
Probab=99.36 E-value=3.9e-12 Score=112.30 Aligned_cols=116 Identities=25% Similarity=0.271 Sum_probs=85.9
Q ss_pred hhHHHHHHHccccccCCCCCCEEEEEecCCCccHHHHHhhhCCCcEEEEEeCChHHHHHHHHHHHcC--CCeEEEEccCC
Q 021911 125 RSKLAAAVLGGVDNIWIKPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKR--TNVIPIIEDAR 202 (305)
Q Consensus 125 ~s~l~a~ll~~l~~~~~~~g~~VLDlG~G~G~~t~~la~~~~~~~~V~avD~s~~~~~~l~~~a~~~--~nI~~~~~D~~ 202 (305)
...++..++..+.........+|||+|||+|.++.++++.. +..+|+++|+|+. +++.++.+ +++.+++.|+.
T Consensus 16 q~~~~~~l~~~~~~~~~~~~~~vLDlG~G~G~~~~~l~~~~-~~~~~~~~D~~~~----~~~~~~~~~~~~~~~~~~d~~ 90 (240)
T TIGR02072 16 QREMAKRLLALLKEKGIFIPASVLDIGCGTGYLTRALLKRF-PQAEFIALDISAG----MLAQAKTKLSENVQFICGDAE 90 (240)
T ss_pred HHHHHHHHHHHhhhhccCCCCeEEEECCCccHHHHHHHHhC-CCCcEEEEeChHH----HHHHHHHhcCCCCeEEecchh
Confidence 44455555554443332345799999999999999999985 5668999999994 44444433 47899999987
Q ss_pred CCcccccCCCcEeEEEEeCC---ChhHHHHHHHHHhccCCCCcEEEEEEc
Q 021911 203 HPAKYRMLVGMVDVIFSDVA---QPDQARILALNASYFLKAGGHFVISIK 249 (305)
Q Consensus 203 ~~~~~~~~~~~fD~V~~d~~---~~~~~~~l~~~a~~~LkpGG~lv~s~~ 249 (305)
+.+. ...+||+|+++.. ..+...++. ++.++|||+|.|++++.
T Consensus 91 ~~~~---~~~~fD~vi~~~~l~~~~~~~~~l~-~~~~~L~~~G~l~~~~~ 136 (240)
T TIGR02072 91 KLPL---EDSSFDLIVSNLALQWCDDLSQALS-ELARVLKPGGLLAFSTF 136 (240)
T ss_pred hCCC---CCCceeEEEEhhhhhhccCHHHHHH-HHHHHcCCCcEEEEEeC
Confidence 6542 2468999999776 235666776 99999999999999873
|
This enzyme, which is found in biotin biosynthetic gene clusters in proteobacteria, firmicutes, green-sulfur bacteria, fusobacterium and bacteroides, is believed to carry out an enzymatic step prior to the formation of pimeloyl-CoA (although attribution of this annotation is not traceable). The enzyme appears related to methyltransferases by homology. |
| >TIGR03533 L3_gln_methyl protein-(glutamine-N5) methyltransferase, ribosomal protein L3-specific | Back alignment and domain information |
|---|
Probab=99.36 E-value=3.5e-11 Score=109.99 Aligned_cols=101 Identities=25% Similarity=0.205 Sum_probs=78.5
Q ss_pred CCCCEEEEEecCCCccHHHHHhhhCCCcEEEEEeCChHHHHHHHHHHHcC---CCeEEEEccCCCCcccccCCCcEeEEE
Q 021911 142 KPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKR---TNVIPIIEDARHPAKYRMLVGMVDVIF 218 (305)
Q Consensus 142 ~~g~~VLDlG~G~G~~t~~la~~~~~~~~V~avD~s~~~~~~l~~~a~~~---~nI~~~~~D~~~~~~~~~~~~~fD~V~ 218 (305)
.+..+|||+|||+|.++..++... +..+|+++|+|+.+++.+.++++.. .+|.+++.|+.+.. ...+||+|+
T Consensus 120 ~~~~~vLDlG~GsG~i~~~la~~~-~~~~v~avDis~~al~~A~~n~~~~~~~~~i~~~~~D~~~~~----~~~~fD~Iv 194 (284)
T TIGR03533 120 EPVKRILDLCTGSGCIAIACAYAF-PEAEVDAVDISPDALAVAEINIERHGLEDRVTLIQSDLFAAL----PGRKYDLIV 194 (284)
T ss_pred CCCCEEEEEeCchhHHHHHHHHHC-CCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECchhhcc----CCCCccEEE
Confidence 345799999999999999999875 5679999999997766666666544 46899999986532 134799999
Q ss_pred EeCCCh----------------------------hHHHHHHHHHhccCCCCcEEEEEE
Q 021911 219 SDVAQP----------------------------DQARILALNASYFLKAGGHFVISI 248 (305)
Q Consensus 219 ~d~~~~----------------------------~~~~~l~~~a~~~LkpGG~lv~s~ 248 (305)
+|+|.. ....++. ++.++|+|||+|++.+
T Consensus 195 ~NPPy~~~~~~~~l~~~~~~ep~~al~gg~dGl~~~~~il~-~a~~~L~~gG~l~~e~ 251 (284)
T TIGR03533 195 SNPPYVDAEDMADLPAEYHHEPELALASGEDGLDLVRRILA-EAADHLNENGVLVVEV 251 (284)
T ss_pred ECCCCCCccchhhCCHhhhcCHHHHhcCCCcHHHHHHHHHH-HHHHhcCCCCEEEEEE
Confidence 998821 1234454 8999999999999987
|
Members of this protein family methylate ribosomal protein L3 on a glutamine side chain. This family is related to HemK, a protein-glutamine methyltranferase for peptide chain release factors. |
| >KOG1540 consensus Ubiquinone biosynthesis methyltransferase COQ5 [Coenzyme transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.35 E-value=8.1e-12 Score=109.43 Aligned_cols=106 Identities=20% Similarity=0.134 Sum_probs=86.9
Q ss_pred cCCCCCCEEEEEecCCCccHHHHHhhhCCC-----cEEEEEeCChHHHHHHHHHHHcC-----CCeEEEEccCCCCcccc
Q 021911 139 IWIKPGARVLYLGAASGTTVSHVSDIVGPN-----GVVYAVEFSHRSGRDLVNMAKKR-----TNVIPIIEDARHPAKYR 208 (305)
Q Consensus 139 ~~~~~g~~VLDlG~G~G~~t~~la~~~~~~-----~~V~avD~s~~~~~~l~~~a~~~-----~nI~~~~~D~~~~~~~~ 208 (305)
+.+.++++|||++||||-.+.-+.+.+... .+|+.+|+|++++....+.++++ ..+.+++.|+.+++
T Consensus 96 L~p~~~m~~lDvaGGTGDiaFril~~v~s~~~~~~~~V~v~Dinp~mL~vgkqRa~~~~l~~~~~~~w~~~dAE~Lp--- 172 (296)
T KOG1540|consen 96 LGPGKGMKVLDVAGGTGDIAFRILRHVKSQFGDRESKVTVLDINPHMLAVGKQRAKKRPLKASSRVEWVEGDAEDLP--- 172 (296)
T ss_pred cCCCCCCeEEEecCCcchhHHHHHHhhccccCCCCceEEEEeCCHHHHHHHHHHHhhcCCCcCCceEEEeCCcccCC---
Confidence 367788999999999999999999998542 79999999996555555555443 34899999999887
Q ss_pred cCCCcEeEEEEeCC---ChhHHHHHHHHHhccCCCCcEEEEEE
Q 021911 209 MLVGMVDVIFSDVA---QPDQARILALNASYFLKAGGHFVISI 248 (305)
Q Consensus 209 ~~~~~fD~V~~d~~---~~~~~~~l~~~a~~~LkpGG~lv~s~ 248 (305)
+.+.+||...+... +++..+.|. +|+++|||||+|.+..
T Consensus 173 Fdd~s~D~yTiafGIRN~th~~k~l~-EAYRVLKpGGrf~cLe 214 (296)
T KOG1540|consen 173 FDDDSFDAYTIAFGIRNVTHIQKALR-EAYRVLKPGGRFSCLE 214 (296)
T ss_pred CCCCcceeEEEecceecCCCHHHHHH-HHHHhcCCCcEEEEEE
Confidence 34689999987665 778888888 9999999999998765
|
|
| >PRK14968 putative methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.35 E-value=6.5e-11 Score=100.93 Aligned_cols=124 Identities=23% Similarity=0.205 Sum_probs=87.8
Q ss_pred CCCCCEEEEEecCCCccHHHHHhhhCCCcEEEEEeCChHHHHHHHHHHHcC--CC--eEEEEccCCCCcccccCCCcEeE
Q 021911 141 IKPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKR--TN--VIPIIEDARHPAKYRMLVGMVDV 216 (305)
Q Consensus 141 ~~~g~~VLDlG~G~G~~t~~la~~~~~~~~V~avD~s~~~~~~l~~~a~~~--~n--I~~~~~D~~~~~~~~~~~~~fD~ 216 (305)
..++.+|||+|||+|.++..++.. ..+|+++|+|+.++..+.+.+... .+ +.+++.|+.+.. ....||+
T Consensus 21 ~~~~~~vLd~G~G~G~~~~~l~~~---~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~~----~~~~~d~ 93 (188)
T PRK14968 21 DKKGDRVLEVGTGSGIVAIVAAKN---GKKVVGVDINPYAVECAKCNAKLNNIRNNGVEVIRSDLFEPF----RGDKFDV 93 (188)
T ss_pred ccCCCEEEEEccccCHHHHHHHhh---cceEEEEECCHHHHHHHHHHHHHcCCCCcceEEEeccccccc----cccCceE
Confidence 467789999999999999999987 368999999996665555544433 23 888899986643 2348999
Q ss_pred EEEeCCChh------------------------HHHHHHHHHhccCCCCcEEEEEEcccccCCCCchhhhHHHHHHHHHH
Q 021911 217 IFSDVAQPD------------------------QARILALNASYFLKAGGHFVISIKANCIDSTVPAEAVFQSEVKKLQQ 272 (305)
Q Consensus 217 V~~d~~~~~------------------------~~~~l~~~a~~~LkpGG~lv~s~~~~~i~~~~~~~~v~~~~~~~l~~ 272 (305)
|++++|... ...++. ++.++|||+|.+++.+. +.. .. ....+.+.+
T Consensus 94 vi~n~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~-~~~~~Lk~gG~~~~~~~--~~~---~~----~~l~~~~~~ 163 (188)
T PRK14968 94 ILFNPPYLPTEEEEEWDDWLNYALSGGKDGREVIDRFLD-EVGRYLKPGGRILLLQS--SLT---GE----DEVLEYLEK 163 (188)
T ss_pred EEECCCcCCCCchhhhhhhhhhhhccCcChHHHHHHHHH-HHHHhcCCCeEEEEEEc--ccC---CH----HHHHHHHHH
Confidence 999877211 223454 89999999999988762 211 11 223466788
Q ss_pred CCCcEeEEe
Q 021911 273 DQFKPFEQV 281 (305)
Q Consensus 273 ~Gf~~~e~~ 281 (305)
.||++....
T Consensus 164 ~g~~~~~~~ 172 (188)
T PRK14968 164 LGFEAEVVA 172 (188)
T ss_pred CCCeeeeee
Confidence 899876544
|
|
| >COG2518 Pcm Protein-L-isoaspartate carboxylmethyltransferase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.35 E-value=5.3e-12 Score=108.69 Aligned_cols=105 Identities=30% Similarity=0.393 Sum_probs=85.0
Q ss_pred HHHHHHHccccccCCCCCCEEEEEecCCCccHHHHHhhhCCCcEEEEEeCChHHHHHHHHHHHcC------CCeEEEEcc
Q 021911 127 KLAAAVLGGVDNIWIKPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKR------TNVIPIIED 200 (305)
Q Consensus 127 ~l~a~ll~~l~~~~~~~g~~VLDlG~G~G~~t~~la~~~~~~~~V~avD~s~~~~~~l~~~a~~~------~nI~~~~~D 200 (305)
.+++.+++.| .++++++|||||||+|+.+..||++++ +|+++|..+ .+.+.|+++ .||.+++.|
T Consensus 59 ~~vA~m~~~L---~~~~g~~VLEIGtGsGY~aAvla~l~~---~V~siEr~~----~L~~~A~~~L~~lg~~nV~v~~gD 128 (209)
T COG2518 59 HMVARMLQLL---ELKPGDRVLEIGTGSGYQAAVLARLVG---RVVSIERIE----ELAEQARRNLETLGYENVTVRHGD 128 (209)
T ss_pred HHHHHHHHHh---CCCCCCeEEEECCCchHHHHHHHHHhC---eEEEEEEcH----HHHHHHHHHHHHcCCCceEEEECC
Confidence 3555665544 589999999999999999999999975 999999999 555555443 689999999
Q ss_pred CCCCcccccCCCcEeEEEEeCCChhHHHHHHHHHhccCCCCcEEEEEE
Q 021911 201 ARHPAKYRMLVGMVDVIFSDVAQPDQARILALNASYFLKAGGHFVISI 248 (305)
Q Consensus 201 ~~~~~~~~~~~~~fD~V~~d~~~~~~~~~l~~~a~~~LkpGG~lv~s~ 248 (305)
...-.+. ..+||+|++..+.+...+.|. +.||+||+|++-+
T Consensus 129 G~~G~~~---~aPyD~I~Vtaaa~~vP~~Ll----~QL~~gGrlv~Pv 169 (209)
T COG2518 129 GSKGWPE---EAPYDRIIVTAAAPEVPEALL----DQLKPGGRLVIPV 169 (209)
T ss_pred cccCCCC---CCCcCEEEEeeccCCCCHHHH----HhcccCCEEEEEE
Confidence 8765432 479999999999877766665 7999999999987
|
|
| >TIGR00406 prmA ribosomal protein L11 methyltransferase | Back alignment and domain information |
|---|
Probab=99.35 E-value=3.6e-11 Score=110.18 Aligned_cols=125 Identities=17% Similarity=0.168 Sum_probs=85.7
Q ss_pred CCCCCEEEEEecCCCccHHHHHhhhCCCcEEEEEeCChHHHHHHHHHHHcC---CCeEEEEccCCCCcccccCCCcEeEE
Q 021911 141 IKPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKR---TNVIPIIEDARHPAKYRMLVGMVDVI 217 (305)
Q Consensus 141 ~~~g~~VLDlG~G~G~~t~~la~~~~~~~~V~avD~s~~~~~~l~~~a~~~---~nI~~~~~D~~~~~~~~~~~~~fD~V 217 (305)
..++.+|||+|||+|.++..++.. ...+|+++|+|+.++..+.+++..+ .++..+..|.... ...+||+|
T Consensus 157 ~~~g~~VLDvGcGsG~lai~aa~~--g~~~V~avDid~~al~~a~~n~~~n~~~~~~~~~~~~~~~~-----~~~~fDlV 229 (288)
T TIGR00406 157 DLKDKNVIDVGCGSGILSIAALKL--GAAKVVGIDIDPLAVESARKNAELNQVSDRLQVKLIYLEQP-----IEGKADVI 229 (288)
T ss_pred cCCCCEEEEeCCChhHHHHHHHHc--CCCeEEEEECCHHHHHHHHHHHHHcCCCcceEEEecccccc-----cCCCceEE
Confidence 456799999999999999888765 3458999999997766666555543 2355555553221 24689999
Q ss_pred EEeCCChhHHHHHHHHHhccCCCCcEEEEEEcccccCCCCchhhhHHHHHHHHHHCCCcEeEEeec
Q 021911 218 FSDVAQPDQARILALNASYFLKAGGHFVISIKANCIDSTVPAEAVFQSEVKKLQQDQFKPFEQVTL 283 (305)
Q Consensus 218 ~~d~~~~~~~~~l~~~a~~~LkpGG~lv~s~~~~~i~~~~~~~~v~~~~~~~l~~~Gf~~~e~~~l 283 (305)
+++........++. ++.++|||||+|+++... . .. .....+.+++. |++.+....
T Consensus 230 van~~~~~l~~ll~-~~~~~LkpgG~li~sgi~----~-~~----~~~v~~~~~~~-f~~~~~~~~ 284 (288)
T TIGR00406 230 VANILAEVIKELYP-QFSRLVKPGGWLILSGIL----E-TQ----AQSVCDAYEQG-FTVVEIRQR 284 (288)
T ss_pred EEecCHHHHHHHHH-HHHHHcCCCcEEEEEeCc----H-hH----HHHHHHHHHcc-CceeeEecc
Confidence 99987665556666 899999999999998611 1 01 12223445555 887766543
|
Ribosomal protein L11 methyltransferase is an S-adenosyl-L-methionine-dependent methyltransferase required for the modification of ribosomal protein L11. This protein is found in bacteria and (with a probable transit peptide) in Arabidopsis. |
| >PRK00216 ubiE ubiquinone/menaquinone biosynthesis methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.35 E-value=5e-11 Score=105.32 Aligned_cols=105 Identities=25% Similarity=0.279 Sum_probs=81.3
Q ss_pred CCCCCCEEEEEecCCCccHHHHHhhhCCCcEEEEEeCChHHHHHHHHHHHc---CCCeEEEEccCCCCcccccCCCcEeE
Q 021911 140 WIKPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKK---RTNVIPIIEDARHPAKYRMLVGMVDV 216 (305)
Q Consensus 140 ~~~~g~~VLDlG~G~G~~t~~la~~~~~~~~V~avD~s~~~~~~l~~~a~~---~~nI~~~~~D~~~~~~~~~~~~~fD~ 216 (305)
...++.+|||+|||+|.++..++..+....+|+++|+++..++.+.+.+.. ..++.++..|+..... ....||+
T Consensus 48 ~~~~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~---~~~~~D~ 124 (239)
T PRK00216 48 GVRPGDKVLDLACGTGDLAIALAKAVGKTGEVVGLDFSEGMLAVGREKLRDLGLSGNVEFVQGDAEALPF---PDNSFDA 124 (239)
T ss_pred CCCCCCeEEEeCCCCCHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHhhcccccccCeEEEecccccCCC---CCCCccE
Confidence 355778999999999999999999874367999999999666555555433 2568899999877542 2468999
Q ss_pred EEEeCC---ChhHHHHHHHHHhccCCCCcEEEEEE
Q 021911 217 IFSDVA---QPDQARILALNASYFLKAGGHFVISI 248 (305)
Q Consensus 217 V~~d~~---~~~~~~~l~~~a~~~LkpGG~lv~s~ 248 (305)
|++... .++...++. ++.++|+|+|.+++..
T Consensus 125 I~~~~~l~~~~~~~~~l~-~~~~~L~~gG~li~~~ 158 (239)
T PRK00216 125 VTIAFGLRNVPDIDKALR-EMYRVLKPGGRLVILE 158 (239)
T ss_pred EEEecccccCCCHHHHHH-HHHHhccCCcEEEEEE
Confidence 998554 345666776 9999999999998875
|
|
| >TIGR00536 hemK_fam HemK family putative methylases | Back alignment and domain information |
|---|
Probab=99.34 E-value=7.4e-11 Score=107.91 Aligned_cols=117 Identities=26% Similarity=0.251 Sum_probs=84.3
Q ss_pred hhhHHHHHHHccccccCCCCCCEEEEEecCCCccHHHHHhhhCCCcEEEEEeCChHHHHHHHHHHHcC---CCeEEEEcc
Q 021911 124 FRSKLAAAVLGGVDNIWIKPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKR---TNVIPIIED 200 (305)
Q Consensus 124 ~~s~l~a~ll~~l~~~~~~~g~~VLDlG~G~G~~t~~la~~~~~~~~V~avD~s~~~~~~l~~~a~~~---~nI~~~~~D 200 (305)
....++..++..+. ...+..+|||+|||+|..+..++... +..+|+++|+|+.++..+.++++.. .++.+++.|
T Consensus 97 ete~lv~~~l~~~~--~~~~~~~vLDlG~GsG~i~l~la~~~-~~~~v~avDis~~al~~a~~n~~~~~~~~~v~~~~~d 173 (284)
T TIGR00536 97 ETEELVEKALASLI--SQNPILHILDLGTGSGCIALALAYEF-PNAEVIAVDISPDALAVAEENAEKNQLEHRVEFIQSN 173 (284)
T ss_pred ccHHHHHHHHHHhh--hcCCCCEEEEEeccHhHHHHHHHHHC-CCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECc
Confidence 34555555543221 12233699999999999999999885 4579999999997766666665543 249999999
Q ss_pred CCCCcccccCCCcEeEEEEeCCC----------------h------------hHHHHHHHHHhccCCCCcEEEEEE
Q 021911 201 ARHPAKYRMLVGMVDVIFSDVAQ----------------P------------DQARILALNASYFLKAGGHFVISI 248 (305)
Q Consensus 201 ~~~~~~~~~~~~~fD~V~~d~~~----------------~------------~~~~~l~~~a~~~LkpGG~lv~s~ 248 (305)
+.+.. ...+||+|++|+|. | ....++. ++.++|+|||+|++.+
T Consensus 174 ~~~~~----~~~~fDlIvsNPPyi~~~~~~~~~~~~~~eP~~AL~gg~dgl~~~~~ii~-~a~~~L~~gG~l~~e~ 244 (284)
T TIGR00536 174 LFEPL----AGQKIDIIVSNPPYIDEEDLADLPNVVRFEPLLALVGGDDGLNILRQIIE-LAPDYLKPNGFLVCEI 244 (284)
T ss_pred hhccC----cCCCccEEEECCCCCCcchhhcCCcccccCcHHHhcCCCcHHHHHHHHHH-HHHHhccCCCEEEEEE
Confidence 86542 12389999999881 1 2334555 8999999999999987
|
The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. Both E. coli and H. influenzae have two members rather than one. The members from the Mycoplasmas have an additional C-terminal domain. |
| >COG2264 PrmA Ribosomal protein L11 methylase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.34 E-value=2.3e-11 Score=110.52 Aligned_cols=139 Identities=22% Similarity=0.235 Sum_probs=94.9
Q ss_pred CCCCCEEEEEecCCCccHHHHHhhhCCCcEEEEEeCChHHHHHHHHHHHcCCCeEE-EEccCCCCcccccCCCcEeEEEE
Q 021911 141 IKPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKRTNVIP-IIEDARHPAKYRMLVGMVDVIFS 219 (305)
Q Consensus 141 ~~~g~~VLDlG~G~G~~t~~la~~~~~~~~V~avD~s~~~~~~l~~~a~~~~nI~~-~~~D~~~~~~~~~~~~~fD~V~~ 219 (305)
.+++.+|||+|||||.++..+++. ....|+|+|++|.+++...+++..+ +|.. +..-....... ....+||+|++
T Consensus 160 ~~~g~~vlDvGcGSGILaIAa~kL--GA~~v~g~DiDp~AV~aa~eNa~~N-~v~~~~~~~~~~~~~~-~~~~~~DvIVA 235 (300)
T COG2264 160 LKKGKTVLDVGCGSGILAIAAAKL--GAKKVVGVDIDPQAVEAARENARLN-GVELLVQAKGFLLLEV-PENGPFDVIVA 235 (300)
T ss_pred hcCCCEEEEecCChhHHHHHHHHc--CCceEEEecCCHHHHHHHHHHHHHc-CCchhhhcccccchhh-cccCcccEEEe
Confidence 458899999999999999998887 4568999999998888888877765 3332 11111111111 11259999999
Q ss_pred eCCChhHHHHHHHHHhccCCCCcEEEEEEcccccCCCCchhhhHHHHHHHHHHCCCcEeEEeecCCCCCceEEEEEEE
Q 021911 220 DVAQPDQARILALNASYFLKAGGHFVISIKANCIDSTVPAEAVFQSEVKKLQQDQFKPFEQVTLEPFERDHACVVGGY 297 (305)
Q Consensus 220 d~~~~~~~~~l~~~a~~~LkpGG~lv~s~~~~~i~~~~~~~~v~~~~~~~l~~~Gf~~~e~~~l~p~~~~~~~vv~~~ 297 (305)
|....- ...|...+.++|||||++++|= |..+. .+ ...+.+.+.||++.++... .+++.+++++
T Consensus 236 NILA~v-l~~La~~~~~~lkpgg~lIlSG----Il~~q-~~----~V~~a~~~~gf~v~~~~~~----~eW~~i~~kr 299 (300)
T COG2264 236 NILAEV-LVELAPDIKRLLKPGGRLILSG----ILEDQ-AE----SVAEAYEQAGFEVVEVLER----EEWVAIVGKR 299 (300)
T ss_pred hhhHHH-HHHHHHHHHHHcCCCceEEEEe----ehHhH-HH----HHHHHHHhCCCeEeEEEec----CCEEEEEEEc
Confidence 995443 3344458999999999999985 21111 11 2246667889999988754 4456666654
|
|
| >smart00828 PKS_MT Methyltransferase in polyketide synthase (PKS) enzymes | Back alignment and domain information |
|---|
Probab=99.34 E-value=2.3e-11 Score=107.00 Aligned_cols=136 Identities=17% Similarity=0.175 Sum_probs=93.5
Q ss_pred CEEEEEecCCCccHHHHHhhhCCCcEEEEEeCChHHHHHHHHHHHcC---CCeEEEEccCCCCcccccCCCcEeEEEEeC
Q 021911 145 ARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKR---TNVIPIIEDARHPAKYRMLVGMVDVIFSDV 221 (305)
Q Consensus 145 ~~VLDlG~G~G~~t~~la~~~~~~~~V~avD~s~~~~~~l~~~a~~~---~nI~~~~~D~~~~~~~~~~~~~fD~V~~d~ 221 (305)
++|||+|||+|.++..+++.+ +..+|+++|+|+..+..+.+..+.. .++.++..|+...+. ..+||+|++..
T Consensus 1 ~~vLDiGcG~G~~~~~la~~~-~~~~v~gid~s~~~~~~a~~~~~~~gl~~~i~~~~~d~~~~~~----~~~fD~I~~~~ 75 (224)
T smart00828 1 KRVLDFGCGYGSDLIDLAERH-PHLQLHGYTISPEQAEVGRERIRALGLQGRIRIFYRDSAKDPF----PDTYDLVFGFE 75 (224)
T ss_pred CeEEEECCCCCHHHHHHHHHC-CCCEEEEEECCHHHHHHHHHHHHhcCCCcceEEEecccccCCC----CCCCCEeehHH
Confidence 379999999999999999886 4579999999995555444444332 578999999865421 35899999744
Q ss_pred C---ChhHHHHHHHHHhccCCCCcEEEEEEcccccCCCCc-----hhh-hHHHHHHHHHHCCCcEeEEeecCCC
Q 021911 222 A---QPDQARILALNASYFLKAGGHFVISIKANCIDSTVP-----AEA-VFQSEVKKLQQDQFKPFEQVTLEPF 286 (305)
Q Consensus 222 ~---~~~~~~~l~~~a~~~LkpGG~lv~s~~~~~i~~~~~-----~~~-v~~~~~~~l~~~Gf~~~e~~~l~p~ 286 (305)
. .++...++. ++.++|||||+|+++........... ... ...+..+.+.+.||++++..++.+.
T Consensus 76 ~l~~~~~~~~~l~-~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~s~~~~~~~l~~~Gf~~~~~~~~~~~ 148 (224)
T smart00828 76 VIHHIKDKMDLFS-NISRHLKDGGHLVLADFIANLLSAIEHEETTSYLVTREEWAELLARNNLRVVEGVDASLE 148 (224)
T ss_pred HHHhCCCHHHHHH-HHHHHcCCCCEEEEEEcccccCccccccccccccCCHHHHHHHHHHCCCeEEEeEECcHh
Confidence 3 345667776 99999999999999863211110000 000 1122345668899999988876553
|
|
| >TIGR00479 rumA 23S rRNA (uracil-5-)-methyltransferase RumA | Back alignment and domain information |
|---|
Probab=99.34 E-value=1.1e-11 Score=119.71 Aligned_cols=137 Identities=15% Similarity=0.095 Sum_probs=99.4
Q ss_pred CCCCCCEEEEEecCCCccHHHHHhhhCCCcEEEEEeCChHHHHHHHHHHHcC--CCeEEEEccCCCCcc-cccCCCcEeE
Q 021911 140 WIKPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKR--TNVIPIIEDARHPAK-YRMLVGMVDV 216 (305)
Q Consensus 140 ~~~~g~~VLDlG~G~G~~t~~la~~~~~~~~V~avD~s~~~~~~l~~~a~~~--~nI~~~~~D~~~~~~-~~~~~~~fD~ 216 (305)
.+.++.+|||+|||+|.++..+|+.. ..|+++|+++.+++.+.++++.. .|+++++.|+.+..+ ......+||+
T Consensus 289 ~~~~~~~vLDl~cG~G~~sl~la~~~---~~V~~vE~~~~av~~a~~n~~~~~~~nv~~~~~d~~~~l~~~~~~~~~~D~ 365 (431)
T TIGR00479 289 ELQGEELVVDAYCGVGTFTLPLAKQA---KSVVGIEVVPESVEKAQQNAELNGIANVEFLAGTLETVLPKQPWAGQIPDV 365 (431)
T ss_pred ccCCCCEEEEcCCCcCHHHHHHHHhC---CEEEEEEcCHHHHHHHHHHHHHhCCCceEEEeCCHHHHHHHHHhcCCCCCE
Confidence 45677899999999999999999874 38999999998777777666554 689999999865321 1112357999
Q ss_pred EEEeCCChh-HHHHHHHHHhccCCCCcEEEEEEcccccCCCCchhhhHHHHHHHHHHCCCcEeEEeecCCCCCceE
Q 021911 217 IFSDVAQPD-QARILALNASYFLKAGGHFVISIKANCIDSTVPAEAVFQSEVKKLQQDQFKPFEQVTLEPFERDHA 291 (305)
Q Consensus 217 V~~d~~~~~-~~~~l~~~a~~~LkpGG~lv~s~~~~~i~~~~~~~~v~~~~~~~l~~~Gf~~~e~~~l~p~~~~~~ 291 (305)
|++|+|... ...++. .+. .|+|++.+++| | ++ ..++..+..|.+.||++..+..++.|...+.
T Consensus 366 vi~dPPr~G~~~~~l~-~l~-~l~~~~ivyvs----c-----~p-~tlard~~~l~~~gy~~~~~~~~DmFP~T~H 429 (431)
T TIGR00479 366 LLLDPPRKGCAAEVLR-TII-ELKPERIVYVS----C-----NP-ATLARDLEFLCKEGYGITWVQPVDMFPHTAH 429 (431)
T ss_pred EEECcCCCCCCHHHHH-HHH-hcCCCEEEEEc----C-----CH-HHHHHHHHHHHHCCeeEEEEEEeccCCCCCC
Confidence 999999644 344443 333 48898766665 3 22 2356667788888999998888877766543
|
This protein family was first proposed to be RNA methyltransferases by homology to the TrmA family. The member from E. coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA. |
| >TIGR00477 tehB tellurite resistance protein TehB | Back alignment and domain information |
|---|
Probab=99.34 E-value=1.6e-11 Score=106.13 Aligned_cols=100 Identities=23% Similarity=0.179 Sum_probs=73.6
Q ss_pred CCCCCEEEEEecCCCccHHHHHhhhCCCcEEEEEeCChHHHHHHHHHHHcC-CCeEEEEccCCCCcccccCCCcEeEEEE
Q 021911 141 IKPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKR-TNVIPIIEDARHPAKYRMLVGMVDVIFS 219 (305)
Q Consensus 141 ~~~g~~VLDlG~G~G~~t~~la~~~~~~~~V~avD~s~~~~~~l~~~a~~~-~nI~~~~~D~~~~~~~~~~~~~fD~V~~ 219 (305)
+.+..+|||+|||+|..+..+|+. ..+|+++|+|+.++..+.+.++.. -++.+.+.|+...+ ...+||+|++
T Consensus 28 ~~~~~~vLDiGcG~G~~a~~la~~---g~~V~~iD~s~~~l~~a~~~~~~~~~~v~~~~~d~~~~~----~~~~fD~I~~ 100 (195)
T TIGR00477 28 TVAPCKTLDLGCGQGRNSLYLSLA---GYDVRAWDHNPASIASVLDMKARENLPLRTDAYDINAAA----LNEDYDFIFS 100 (195)
T ss_pred cCCCCcEEEeCCCCCHHHHHHHHC---CCeEEEEECCHHHHHHHHHHHHHhCCCceeEeccchhcc----ccCCCCEEEE
Confidence 445679999999999999999986 258999999996666555554432 24677777875433 2358999998
Q ss_pred eCCC-----hhHHHHHHHHHhccCCCCcEEEEEE
Q 021911 220 DVAQ-----PDQARILALNASYFLKAGGHFVISI 248 (305)
Q Consensus 220 d~~~-----~~~~~~l~~~a~~~LkpGG~lv~s~ 248 (305)
..+. .+...++. ++.++|||||++++.+
T Consensus 101 ~~~~~~~~~~~~~~~l~-~~~~~LkpgG~lli~~ 133 (195)
T TIGR00477 101 TVVFMFLQAGRVPEIIA-NMQAHTRPGGYNLIVA 133 (195)
T ss_pred ecccccCCHHHHHHHHH-HHHHHhCCCcEEEEEE
Confidence 7652 23455665 9999999999976654
|
Part of a tellurite-reducing operon tehA and tehB |
| >PF13649 Methyltransf_25: Methyltransferase domain; PDB: 3BXO_B 3GGD_A 3PX2_A 3PX3_A 3PFH_D 3PFG_A 1Y8C_A | Back alignment and domain information |
|---|
Probab=99.34 E-value=5.1e-12 Score=97.39 Aligned_cols=93 Identities=22% Similarity=0.283 Sum_probs=67.1
Q ss_pred EEEEecCCCccHHHHHhhh--CCCcEEEEEeCChHHHHHHHHHHHcC-CCeEEEEccCCCCcccccCCCcEeEEEEeCC-
Q 021911 147 VLYLGAASGTTVSHVSDIV--GPNGVVYAVEFSHRSGRDLVNMAKKR-TNVIPIIEDARHPAKYRMLVGMVDVIFSDVA- 222 (305)
Q Consensus 147 VLDlG~G~G~~t~~la~~~--~~~~~V~avD~s~~~~~~l~~~a~~~-~nI~~~~~D~~~~~~~~~~~~~fD~V~~d~~- 222 (305)
|||+|||+|..+..+++.+ ++..++++||+|+.++..+.+..+.. .++++++.|+.+.+.. .++||+|++...
T Consensus 1 ILDlgcG~G~~~~~l~~~~~~~~~~~~~gvD~s~~~l~~~~~~~~~~~~~~~~~~~D~~~l~~~---~~~~D~v~~~~~~ 77 (101)
T PF13649_consen 1 ILDLGCGTGRVTRALARRFDAGPSSRVIGVDISPEMLELAKKRFSEDGPKVRFVQADARDLPFS---DGKFDLVVCSGLS 77 (101)
T ss_dssp -EEET-TTSHHHHHHHHHS-----SEEEEEES-HHHHHHHHHHSHHTTTTSEEEESCTTCHHHH---SSSEEEEEE-TTG
T ss_pred CEEeecCCcHHHHHHHHHhhhcccceEEEEECCHHHHHHHHHhchhcCCceEEEECCHhHCccc---CCCeeEEEEcCCc
Confidence 7999999999999999987 33469999999996555555444433 5899999999886533 579999999432
Q ss_pred ----ChhHHHHHHHHHhccCCCCc
Q 021911 223 ----QPDQARILALNASYFLKAGG 242 (305)
Q Consensus 223 ----~~~~~~~l~~~a~~~LkpGG 242 (305)
.+++.+.+..++.++|||||
T Consensus 78 ~~~~~~~~~~~ll~~~~~~l~pgG 101 (101)
T PF13649_consen 78 LHHLSPEELEALLRRIARLLRPGG 101 (101)
T ss_dssp GGGSSHHHHHHHHHHHHHTEEEEE
T ss_pred cCCCCHHHHHHHHHHHHHHhCCCC
Confidence 44455555559999999987
|
|
| >PRK14121 tRNA (guanine-N(7)-)-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.33 E-value=1.5e-11 Score=115.89 Aligned_cols=106 Identities=21% Similarity=0.228 Sum_probs=86.9
Q ss_pred CCCCCCEEEEEecCCCccHHHHHhhhCCCcEEEEEeCChHHHHHHHHHHHcC--CCeEEEEccCCCCcccccCCCcEeEE
Q 021911 140 WIKPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKR--TNVIPIIEDARHPAKYRMLVGMVDVI 217 (305)
Q Consensus 140 ~~~~g~~VLDlG~G~G~~t~~la~~~~~~~~V~avD~s~~~~~~l~~~a~~~--~nI~~~~~D~~~~~~~~~~~~~fD~V 217 (305)
....+..+||||||+|.++.++|... |...++|+|+++.++..+.+.+... +||.+++.|+...... ...+++|.|
T Consensus 119 ~~~~~p~vLEIGcGsG~~ll~lA~~~-P~~~~iGIEI~~~~i~~a~~ka~~~gL~NV~~i~~DA~~ll~~-~~~~s~D~I 196 (390)
T PRK14121 119 SKNQEKILIEIGFGSGRHLLYQAKNN-PNKLFIGIEIHTPSIEQVLKQIELLNLKNLLIINYDARLLLEL-LPSNSVEKI 196 (390)
T ss_pred cCCCCCeEEEEcCcccHHHHHHHHhC-CCCCEEEEECCHHHHHHHHHHHHHcCCCcEEEEECCHHHhhhh-CCCCceeEE
Confidence 34456799999999999999999986 7789999999998887777777665 6999999999764322 345799999
Q ss_pred EEeCCChh---------HHHHHHHHHhccCCCCcEEEEEE
Q 021911 218 FSDVAQPD---------QARILALNASYFLKAGGHFVISI 248 (305)
Q Consensus 218 ~~d~~~~~---------~~~~l~~~a~~~LkpGG~lv~s~ 248 (305)
+++.|.|+ +...+. .++++|+|||.+.+.|
T Consensus 197 ~lnFPdPW~KkrHRRlv~~~fL~-e~~RvLkpGG~l~l~T 235 (390)
T PRK14121 197 FVHFPVPWDKKPHRRVISEDFLN-EALRVLKPGGTLELRT 235 (390)
T ss_pred EEeCCCCccccchhhccHHHHHH-HHHHHcCCCcEEEEEE
Confidence 99988664 245565 8999999999999998
|
|
| >PF13489 Methyltransf_23: Methyltransferase domain; PDB: 3JWJ_A 3JWH_B 2AOV_B 2AOT_A 1JQD_B 2AOX_A 1JQE_A 2AOU_B 2AOW_A 3DLI_C | Back alignment and domain information |
|---|
Probab=99.33 E-value=2.1e-11 Score=100.98 Aligned_cols=95 Identities=32% Similarity=0.422 Sum_probs=73.7
Q ss_pred CCCCCEEEEEecCCCccHHHHHhhhCCCcEEEEEeCChHHHHHHHHHHHcCCCeEEEEccCCCCcccccCCCcEeEEEEe
Q 021911 141 IKPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKRTNVIPIIEDARHPAKYRMLVGMVDVIFSD 220 (305)
Q Consensus 141 ~~~g~~VLDlG~G~G~~t~~la~~~~~~~~V~avD~s~~~~~~l~~~a~~~~nI~~~~~D~~~~~~~~~~~~~fD~V~~d 220 (305)
..++.+|||+|||+|.++..+++. + .+|+++|+|+ .+++. .++.....+...... ...+||+|++.
T Consensus 20 ~~~~~~vLDiGcG~G~~~~~l~~~--~-~~~~g~D~~~----~~~~~----~~~~~~~~~~~~~~~---~~~~fD~i~~~ 85 (161)
T PF13489_consen 20 LKPGKRVLDIGCGTGSFLRALAKR--G-FEVTGVDISP----QMIEK----RNVVFDNFDAQDPPF---PDGSFDLIICN 85 (161)
T ss_dssp TTTTSEEEEESSTTSHHHHHHHHT--T-SEEEEEESSH----HHHHH----TTSEEEEEECHTHHC---HSSSEEEEEEE
T ss_pred cCCCCEEEEEcCCCCHHHHHHHHh--C-CEEEEEECCH----HHHhh----hhhhhhhhhhhhhhc---cccchhhHhhH
Confidence 567899999999999999999776 2 3999999999 44444 345555554443322 35799999997
Q ss_pred CC---ChhHHHHHHHHHhccCCCCcEEEEEEcc
Q 021911 221 VA---QPDQARILALNASYFLKAGGHFVISIKA 250 (305)
Q Consensus 221 ~~---~~~~~~~l~~~a~~~LkpGG~lv~s~~~ 250 (305)
.. .++...+|. ++.++|||||+++++++.
T Consensus 86 ~~l~~~~d~~~~l~-~l~~~LkpgG~l~~~~~~ 117 (161)
T PF13489_consen 86 DVLEHLPDPEEFLK-ELSRLLKPGGYLVISDPN 117 (161)
T ss_dssp SSGGGSSHHHHHHH-HHHHCEEEEEEEEEEEEB
T ss_pred HHHhhcccHHHHHH-HHHHhcCCCCEEEEEEcC
Confidence 76 567777887 999999999999999854
|
... |
| >TIGR01177 conserved hypothetical protein TIGR01177 | Back alignment and domain information |
|---|
Probab=99.33 E-value=1.5e-11 Score=114.72 Aligned_cols=136 Identities=16% Similarity=0.089 Sum_probs=96.4
Q ss_pred hhhHHHHHHHccccccCCCCCCEEEEEecCCCccHHHHHhhhCCCcEEEEEeCChHHHHHHHHHHHcC--CCeEEEEccC
Q 021911 124 FRSKLAAAVLGGVDNIWIKPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKR--TNVIPIIEDA 201 (305)
Q Consensus 124 ~~s~l~a~ll~~l~~~~~~~g~~VLDlG~G~G~~t~~la~~~~~~~~V~avD~s~~~~~~l~~~a~~~--~nI~~~~~D~ 201 (305)
....++..++... .++++.+|||+|||+|+++..++.. ...|+++|+++.+++.+..+++.. .++.+++.|+
T Consensus 166 l~~~la~~~~~l~---~~~~g~~vLDp~cGtG~~lieaa~~---~~~v~g~Di~~~~~~~a~~nl~~~g~~~i~~~~~D~ 239 (329)
T TIGR01177 166 MDPKLARAMVNLA---RVTEGDRVLDPFCGTGGFLIEAGLM---GAKVIGCDIDWKMVAGARINLEHYGIEDFFVKRGDA 239 (329)
T ss_pred CCHHHHHHHHHHh---CCCCcCEEEECCCCCCHHHHHHHHh---CCeEEEEcCCHHHHHHHHHHHHHhCCCCCeEEecch
Confidence 3445666655322 4678999999999999998887664 358999999997766655555443 4688899999
Q ss_pred CCCcccccCCCcEeEEEEeCCC------------hhHHHHHHHHHhccCCCCcEEEEEEcccccCCCCchhhhHHHHHHH
Q 021911 202 RHPAKYRMLVGMVDVIFSDVAQ------------PDQARILALNASYFLKAGGHFVISIKANCIDSTVPAEAVFQSEVKK 269 (305)
Q Consensus 202 ~~~~~~~~~~~~fD~V~~d~~~------------~~~~~~l~~~a~~~LkpGG~lv~s~~~~~i~~~~~~~~v~~~~~~~ 269 (305)
++.+.. ..+||+|++|+|. ..+.+++. ++.++|||||++++.++... . ..+.
T Consensus 240 ~~l~~~---~~~~D~Iv~dPPyg~~~~~~~~~~~~l~~~~l~-~~~r~Lk~gG~lv~~~~~~~------~------~~~~ 303 (329)
T TIGR01177 240 TKLPLS---SESVDAIATDPPYGRSTTAAGDGLESLYERSLE-EFHEVLKSEGWIVYAVPTRI------D------LESL 303 (329)
T ss_pred hcCCcc---cCCCCEEEECCCCcCcccccCCchHHHHHHHHH-HHHHHccCCcEEEEEEcCCC------C------HHHH
Confidence 876432 4689999999982 11456666 89999999999999873210 0 1234
Q ss_pred HHHCCCcEeEEee
Q 021911 270 LQQDQFKPFEQVT 282 (305)
Q Consensus 270 l~~~Gf~~~e~~~ 282 (305)
+++.|| ++....
T Consensus 304 ~~~~g~-i~~~~~ 315 (329)
T TIGR01177 304 AEDAFR-VVKRFE 315 (329)
T ss_pred HhhcCc-chheee
Confidence 577888 665543
|
This family is found exclusively in the Archaea. |
| >COG2813 RsmC 16S RNA G1207 methylase RsmC [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.33 E-value=4e-12 Score=114.84 Aligned_cols=105 Identities=22% Similarity=0.241 Sum_probs=80.7
Q ss_pred cccCCCCCCEEEEEecCCCccHHHHHhhhCCCcEEEEEeCChHHHHHHHHHHHcC--CCeEEEEccCCCCcccccCCCcE
Q 021911 137 DNIWIKPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKR--TNVIPIIEDARHPAKYRMLVGMV 214 (305)
Q Consensus 137 ~~~~~~~g~~VLDlG~G~G~~t~~la~~~~~~~~V~avD~s~~~~~~l~~~a~~~--~nI~~~~~D~~~~~~~~~~~~~f 214 (305)
+++...+..+|||+|||.|..++.+++.. |..+|+-+|+|.++++...++++.+ ++.+++..|..... .++|
T Consensus 152 ~~l~~~~~~~vlDlGCG~Gvlg~~la~~~-p~~~vtmvDvn~~Av~~ar~Nl~~N~~~~~~v~~s~~~~~v-----~~kf 225 (300)
T COG2813 152 ETLPPDLGGKVLDLGCGYGVLGLVLAKKS-PQAKLTLVDVNARAVESARKNLAANGVENTEVWASNLYEPV-----EGKF 225 (300)
T ss_pred HhCCccCCCcEEEeCCCccHHHHHHHHhC-CCCeEEEEecCHHHHHHHHHhHHHcCCCccEEEEecccccc-----cccc
Confidence 33355666699999999999999999986 6789999999997776666666655 44445556654432 3499
Q ss_pred eEEEEeCCCh--------hHHHHHHHHHhccCCCCcEEEEEE
Q 021911 215 DVIFSDVAQP--------DQARILALNASYFLKAGGHFVISI 248 (305)
Q Consensus 215 D~V~~d~~~~--------~~~~~l~~~a~~~LkpGG~lv~s~ 248 (305)
|+|+||+|.. .-.+++. .|.++|++||.|.++.
T Consensus 226 d~IisNPPfh~G~~v~~~~~~~~i~-~A~~~L~~gGeL~iVa 266 (300)
T COG2813 226 DLIISNPPFHAGKAVVHSLAQEIIA-AAARHLKPGGELWIVA 266 (300)
T ss_pred cEEEeCCCccCCcchhHHHHHHHHH-HHHHhhccCCEEEEEE
Confidence 9999999932 1235665 9999999999999998
|
|
| >COG2890 HemK Methylase of polypeptide chain release factors [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.33 E-value=1e-10 Score=106.57 Aligned_cols=115 Identities=29% Similarity=0.338 Sum_probs=82.7
Q ss_pred chhhHHHHHHHccccccCCCCCCEEEEEecCCCccHHHHHhhhCCCcEEEEEeCChHHHHHHHHHHHcC--CCeEEEEcc
Q 021911 123 PFRSKLAAAVLGGVDNIWIKPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKR--TNVIPIIED 200 (305)
Q Consensus 123 ~~~s~l~a~ll~~l~~~~~~~g~~VLDlG~G~G~~t~~la~~~~~~~~V~avD~s~~~~~~l~~~a~~~--~nI~~~~~D 200 (305)
|....|+..++..+. ..+. +|||+|||||..++.++... +..+|+|+|+|+.++.-+.++++.. .++.+++.|
T Consensus 94 ~dTe~Lve~~l~~~~---~~~~-~ilDlGTGSG~iai~la~~~-~~~~V~a~Dis~~Al~~A~~Na~~~~l~~~~~~~~d 168 (280)
T COG2890 94 PDTELLVEAALALLL---QLDK-RILDLGTGSGAIAIALAKEG-PDAEVIAVDISPDALALARENAERNGLVRVLVVQSD 168 (280)
T ss_pred CchHHHHHHHHHhhh---hcCC-cEEEecCChHHHHHHHHhhC-cCCeEEEEECCHHHHHHHHHHHHHcCCccEEEEeee
Confidence 335566666542121 1111 89999999999999999986 5679999999997766666666654 456666667
Q ss_pred CCCCcccccCCCcEeEEEEeCCC----------------h------------hHHHHHHHHHhccCCCCcEEEEEE
Q 021911 201 ARHPAKYRMLVGMVDVIFSDVAQ----------------P------------DQARILALNASYFLKAGGHFVISI 248 (305)
Q Consensus 201 ~~~~~~~~~~~~~fD~V~~d~~~----------------~------------~~~~~l~~~a~~~LkpGG~lv~s~ 248 (305)
+.... ..+||+|++|+|. | ...+++. ++..+|+|+|.+++.+
T Consensus 169 lf~~~-----~~~fDlIVsNPPYip~~~~~~~~~~~~~EP~~Al~~g~dGl~~~~~i~~-~a~~~l~~~g~l~le~ 238 (280)
T COG2890 169 LFEPL-----RGKFDLIVSNPPYIPAEDPELLPEVVRYEPLLALVGGGDGLEVYRRILG-EAPDILKPGGVLILEI 238 (280)
T ss_pred ccccc-----CCceeEEEeCCCCCCCcccccChhhhccCHHHHHccCccHHHHHHHHHH-hhHHHcCCCcEEEEEE
Confidence 65543 3599999999991 0 2344454 8999999999999987
|
|
| >PF06325 PrmA: Ribosomal protein L11 methyltransferase (PrmA); InterPro: IPR010456 This family consists of several Ribosomal protein L11 methyltransferase sequences | Back alignment and domain information |
|---|
Probab=99.33 E-value=3.3e-11 Score=110.16 Aligned_cols=134 Identities=18% Similarity=0.250 Sum_probs=93.5
Q ss_pred CCCCCEEEEEecCCCccHHHHHhhhCCCcEEEEEeCChHHHHHHHHHHHcC---CCeEEEEccCCCCcccccCCCcEeEE
Q 021911 141 IKPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKR---TNVIPIIEDARHPAKYRMLVGMVDVI 217 (305)
Q Consensus 141 ~~~g~~VLDlG~G~G~~t~~la~~~~~~~~V~avD~s~~~~~~l~~~a~~~---~nI~~~~~D~~~~~~~~~~~~~fD~V 217 (305)
..++.+|||+|||||.+++..+.. ...+|+|+|+++.+++.+.++++.+ .++.. ....+. ...+||+|
T Consensus 159 ~~~g~~vLDvG~GSGILaiaA~kl--GA~~v~a~DiDp~Av~~a~~N~~~N~~~~~~~v--~~~~~~-----~~~~~dlv 229 (295)
T PF06325_consen 159 VKPGKRVLDVGCGSGILAIAAAKL--GAKKVVAIDIDPLAVEAARENAELNGVEDRIEV--SLSEDL-----VEGKFDLV 229 (295)
T ss_dssp SSTTSEEEEES-TTSHHHHHHHHT--TBSEEEEEESSCHHHHHHHHHHHHTT-TTCEEE--SCTSCT-----CCS-EEEE
T ss_pred ccCCCEEEEeCCcHHHHHHHHHHc--CCCeEEEecCCHHHHHHHHHHHHHcCCCeeEEE--EEeccc-----ccccCCEE
Confidence 567899999999999999988886 3568999999998888888888776 33332 211111 23799999
Q ss_pred EEeCCChhHHHHHHHHHhccCCCCcEEEEEEcccccCCCCchhhhHHHHHHHHHHCCCcEeEEeecCCCCCceEEEEEEE
Q 021911 218 FSDVAQPDQARILALNASYFLKAGGHFVISIKANCIDSTVPAEAVFQSEVKKLQQDQFKPFEQVTLEPFERDHACVVGGY 297 (305)
Q Consensus 218 ~~d~~~~~~~~~l~~~a~~~LkpGG~lv~s~~~~~i~~~~~~~~v~~~~~~~l~~~Gf~~~e~~~l~p~~~~~~~vv~~~ 297 (305)
++|....-...++. .+.++|+|+|+|++|=- ... ... ...+.+++ ||++.+... ..++..++++|
T Consensus 230 vANI~~~vL~~l~~-~~~~~l~~~G~lIlSGI----l~~-~~~----~v~~a~~~-g~~~~~~~~----~~~W~~l~~~K 294 (295)
T PF06325_consen 230 VANILADVLLELAP-DIASLLKPGGYLILSGI----LEE-QED----EVIEAYKQ-GFELVEERE----EGEWVALVFKK 294 (295)
T ss_dssp EEES-HHHHHHHHH-HCHHHEEEEEEEEEEEE----EGG-GHH----HHHHHHHT-TEEEEEEEE----ETTEEEEEEEE
T ss_pred EECCCHHHHHHHHH-HHHHhhCCCCEEEEccc----cHH-HHH----HHHHHHHC-CCEEEEEEE----ECCEEEEEEEe
Confidence 99999777777776 88899999999999851 111 111 12345555 999887764 35566677766
Q ss_pred c
Q 021911 298 R 298 (305)
Q Consensus 298 ~ 298 (305)
+
T Consensus 295 k 295 (295)
T PF06325_consen 295 K 295 (295)
T ss_dssp -
T ss_pred C
Confidence 4
|
Its genetic determinant is prmA, which forms a bifunctional operon with the downstream panF gene []. The role of L11 methylation in ribosome function is, as yet, unknown. Deletion of the prmA gene in Escherichia coli showed no obvious effect [] except for the production of undermethylated forms of L11 []. Methylation is the most common post-transcriptional modification to ribosomal proteins in all organisms. PrmA is the only bacterial enzyme that catalyses the methylation of a ribosomal protein [].; GO: 0008276 protein methyltransferase activity, 0006479 protein methylation, 0005737 cytoplasm; PDB: 3GRZ_B 1F3L_A 2NXJ_B 3CJT_I 3CJQ_G 2NXE_A 2NXC_A 2ZBP_A 3EGV_A 3CJS_A .... |
| >PRK15128 23S rRNA m(5)C1962 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.32 E-value=2.7e-11 Score=115.37 Aligned_cols=104 Identities=17% Similarity=0.026 Sum_probs=77.7
Q ss_pred CCCCEEEEEecCCCccHHHHHhhhCCCcEEEEEeCChHHHHHHHHHHHcC----CCeEEEEccCCCCccc-ccCCCcEeE
Q 021911 142 KPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKR----TNVIPIIEDARHPAKY-RMLVGMVDV 216 (305)
Q Consensus 142 ~~g~~VLDlG~G~G~~t~~la~~~~~~~~V~avD~s~~~~~~l~~~a~~~----~nI~~~~~D~~~~~~~-~~~~~~fD~ 216 (305)
.++.+|||+|||+|.++.+++.. ...+|++||+|+.++..+.++++.+ .+++++++|+.+.... .....+||+
T Consensus 219 ~~g~rVLDlfsgtG~~~l~aa~~--ga~~V~~VD~s~~al~~a~~N~~~Ngl~~~~v~~i~~D~~~~l~~~~~~~~~fDl 296 (396)
T PRK15128 219 VENKRVLNCFSYTGGFAVSALMG--GCSQVVSVDTSQEALDIARQNVELNKLDLSKAEFVRDDVFKLLRTYRDRGEKFDV 296 (396)
T ss_pred cCCCeEEEeccCCCHHHHHHHhC--CCCEEEEEECCHHHHHHHHHHHHHcCCCCCcEEEEEccHHHHHHHHHhcCCCCCE
Confidence 45789999999999998876643 4558999999998877766666654 2689999999765321 111358999
Q ss_pred EEEeCCC--h----------hHHHHHHHHHhccCCCCcEEEEEE
Q 021911 217 IFSDVAQ--P----------DQARILALNASYFLKAGGHFVISI 248 (305)
Q Consensus 217 V~~d~~~--~----------~~~~~l~~~a~~~LkpGG~lv~s~ 248 (305)
|++|+|. . ...+++. .+.++|+|||.|++++
T Consensus 297 VilDPP~f~~~k~~l~~~~~~y~~l~~-~a~~lLk~gG~lv~~s 339 (396)
T PRK15128 297 IVMDPPKFVENKSQLMGACRGYKDINM-LAIQLLNPGGILLTFS 339 (396)
T ss_pred EEECCCCCCCChHHHHHHHHHHHHHHH-HHHHHcCCCeEEEEEe
Confidence 9999993 1 1223333 6889999999999887
|
|
| >PRK03522 rumB 23S rRNA methyluridine methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.32 E-value=1.8e-11 Score=113.55 Aligned_cols=131 Identities=15% Similarity=0.065 Sum_probs=92.7
Q ss_pred CCCEEEEEecCCCccHHHHHhhhCCCcEEEEEeCChHHHHHHHHHHHcC--CCeEEEEccCCCCcccccCCCcEeEEEEe
Q 021911 143 PGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKR--TNVIPIIEDARHPAKYRMLVGMVDVIFSD 220 (305)
Q Consensus 143 ~g~~VLDlG~G~G~~t~~la~~~~~~~~V~avD~s~~~~~~l~~~a~~~--~nI~~~~~D~~~~~~~~~~~~~fD~V~~d 220 (305)
++.+|||+|||+|.++..+|+. ..+|+++|+|+.+++.+.+.++.. +|+++++.|+.+.... ....||+|++|
T Consensus 173 ~~~~VLDl~cG~G~~sl~la~~---~~~V~gvD~s~~av~~A~~n~~~~~l~~v~~~~~D~~~~~~~--~~~~~D~Vv~d 247 (315)
T PRK03522 173 PPRSMWDLFCGVGGFGLHCATP---GMQLTGIEISAEAIACAKQSAAELGLTNVQFQALDSTQFATA--QGEVPDLVLVN 247 (315)
T ss_pred CCCEEEEccCCCCHHHHHHHhc---CCEEEEEeCCHHHHHHHHHHHHHcCCCceEEEEcCHHHHHHh--cCCCCeEEEEC
Confidence 4689999999999999999985 258999999998877777666554 5799999999765321 23479999999
Q ss_pred CCChhHHHHHHHHHhccCCCCcEEEEEEcccccCCCCchhhhHHHHHHHHHHCCCcEeEEeecCCCCCceE
Q 021911 221 VAQPDQARILALNASYFLKAGGHFVISIKANCIDSTVPAEAVFQSEVKKLQQDQFKPFEQVTLEPFERDHA 291 (305)
Q Consensus 221 ~~~~~~~~~l~~~a~~~LkpGG~lv~s~~~~~i~~~~~~~~v~~~~~~~l~~~Gf~~~e~~~l~p~~~~~~ 291 (305)
+|.......+. .+...++|...+++| |-..+ ++..+..| .+|++.+...++.|...+.
T Consensus 248 PPr~G~~~~~~-~~l~~~~~~~ivyvs----c~p~t------~~rd~~~l--~~y~~~~~~~~DmFP~T~H 305 (315)
T PRK03522 248 PPRRGIGKELC-DYLSQMAPRFILYSS----CNAQT------MAKDLAHL--PGYRIERVQLFDMFPHTAH 305 (315)
T ss_pred CCCCCccHHHH-HHHHHcCCCeEEEEE----CCccc------chhHHhhc--cCcEEEEEEEeccCCCCCe
Confidence 99554333333 333446777555555 32222 34445556 5899998887777776444
|
|
| >TIGR01934 MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis methyltransferases | Back alignment and domain information |
|---|
Probab=99.32 E-value=7.4e-11 Score=103.12 Aligned_cols=105 Identities=21% Similarity=0.181 Sum_probs=79.4
Q ss_pred CCCCCCEEEEEecCCCccHHHHHhhhCCCcEEEEEeCChHHHHHHHHHHHcCCCeEEEEccCCCCcccccCCCcEeEEEE
Q 021911 140 WIKPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKRTNVIPIIEDARHPAKYRMLVGMVDVIFS 219 (305)
Q Consensus 140 ~~~~g~~VLDlG~G~G~~t~~la~~~~~~~~V~avD~s~~~~~~l~~~a~~~~nI~~~~~D~~~~~~~~~~~~~fD~V~~ 219 (305)
...++.+|||+|||+|.++..++..+....+++++|+++..+..+.+......++.++..|+.+.+. ..+.||+|++
T Consensus 36 ~~~~~~~vldiG~G~G~~~~~~~~~~~~~~~~~~iD~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~---~~~~~D~i~~ 112 (223)
T TIGR01934 36 GVFKGQKVLDVACGTGDLAIELAKSAPDRGKVTGVDFSSEMLEVAKKKSELPLNIEFIQADAEALPF---EDNSFDAVTI 112 (223)
T ss_pred ccCCCCeEEEeCCCCChhHHHHHHhcCCCceEEEEECCHHHHHHHHHHhccCCCceEEecchhcCCC---CCCcEEEEEE
Confidence 3457899999999999999999998743368999999995544444433322578999999877542 2468999988
Q ss_pred eCC---ChhHHHHHHHHHhccCCCCcEEEEEE
Q 021911 220 DVA---QPDQARILALNASYFLKAGGHFVISI 248 (305)
Q Consensus 220 d~~---~~~~~~~l~~~a~~~LkpGG~lv~s~ 248 (305)
... .++...++. ++.++|+|||+|++..
T Consensus 113 ~~~~~~~~~~~~~l~-~~~~~L~~gG~l~~~~ 143 (223)
T TIGR01934 113 AFGLRNVTDIQKALR-EMYRVLKPGGRLVILE 143 (223)
T ss_pred eeeeCCcccHHHHHH-HHHHHcCCCcEEEEEE
Confidence 654 345556666 9999999999999875
|
Note that a number of non-orthologous genes which are members of pfam03737 have been erroneously annotated as MenG methyltransferases. |
| >PRK09489 rsmC 16S ribosomal RNA m2G1207 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.31 E-value=8.4e-11 Score=110.06 Aligned_cols=100 Identities=16% Similarity=0.177 Sum_probs=76.0
Q ss_pred CCCCEEEEEecCCCccHHHHHhhhCCCcEEEEEeCChHHHHHHHHHHHcC-CCeEEEEccCCCCcccccCCCcEeEEEEe
Q 021911 142 KPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKR-TNVIPIIEDARHPAKYRMLVGMVDVIFSD 220 (305)
Q Consensus 142 ~~g~~VLDlG~G~G~~t~~la~~~~~~~~V~avD~s~~~~~~l~~~a~~~-~nI~~~~~D~~~~~~~~~~~~~fD~V~~d 220 (305)
....+|||+|||+|.++..+++.. +..+|+++|+|+.+++.+.+.++.+ ....++..|+... ..+.||+|++|
T Consensus 195 ~~~g~VLDlGCG~G~ls~~la~~~-p~~~v~~vDis~~Al~~A~~nl~~n~l~~~~~~~D~~~~-----~~~~fDlIvsN 268 (342)
T PRK09489 195 HTKGKVLDVGCGAGVLSAVLARHS-PKIRLTLSDVSAAALESSRATLAANGLEGEVFASNVFSD-----IKGRFDMIISN 268 (342)
T ss_pred cCCCeEEEeccCcCHHHHHHHHhC-CCCEEEEEECCHHHHHHHHHHHHHcCCCCEEEEcccccc-----cCCCccEEEEC
Confidence 345689999999999999999874 5678999999997766665555544 2345666776542 24689999999
Q ss_pred CCCh-------hH-HHHHHHHHhccCCCCcEEEEEE
Q 021911 221 VAQP-------DQ-ARILALNASYFLKAGGHFVISI 248 (305)
Q Consensus 221 ~~~~-------~~-~~~l~~~a~~~LkpGG~lv~s~ 248 (305)
+|.. .. .+++. ++.++|||||.|+++.
T Consensus 269 PPFH~g~~~~~~~~~~~i~-~a~~~LkpgG~L~iVa 303 (342)
T PRK09489 269 PPFHDGIQTSLDAAQTLIR-GAVRHLNSGGELRIVA 303 (342)
T ss_pred CCccCCccccHHHHHHHHH-HHHHhcCcCCEEEEEE
Confidence 9832 22 44454 9999999999999987
|
|
| >COG0293 FtsJ 23S rRNA methylase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.31 E-value=5.5e-11 Score=102.28 Aligned_cols=157 Identities=27% Similarity=0.279 Sum_probs=104.8
Q ss_pred hhhHHHHHHHcccccc-CCCCCCEEEEEecCCCccHHHHHhhhCCCcEEEEEeCChHHHHHHHHHHHcCCCeEEEEccCC
Q 021911 124 FRSKLAAAVLGGVDNI-WIKPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKRTNVIPIIEDAR 202 (305)
Q Consensus 124 ~~s~l~a~ll~~l~~~-~~~~g~~VLDlG~G~G~~t~~la~~~~~~~~V~avD~s~~~~~~l~~~a~~~~nI~~~~~D~~ 202 (305)
|+|..+-.+++..++. .+++++.|+||||+||.++..+++.+++...|++||+.| .+..++|.+++.|++
T Consensus 25 yRSRAa~KL~el~~k~~i~~~~~~ViDLGAAPGgWsQva~~~~~~~~~ivavDi~p---------~~~~~~V~~iq~d~~ 95 (205)
T COG0293 25 YRSRAAYKLLELNEKFKLFKPGMVVVDLGAAPGGWSQVAAKKLGAGGKIVAVDILP---------MKPIPGVIFLQGDIT 95 (205)
T ss_pred ccchHHHHHHHHHHhcCeecCCCEEEEcCCCCCcHHHHHHHHhCCCCcEEEEECcc---------cccCCCceEEeeecc
Confidence 4777777777655544 457789999999999999999999998888899999998 233368999999998
Q ss_pred CCcccc-----cCCCcEeEEEEeCCC-------hhHHHH------HHHHHhccCCCCcEEEEEEcccccCCCCchhhhHH
Q 021911 203 HPAKYR-----MLVGMVDVIFSDVAQ-------PDQARI------LALNASYFLKAGGHFVISIKANCIDSTVPAEAVFQ 264 (305)
Q Consensus 203 ~~~~~~-----~~~~~fD~V~~d~~~-------~~~~~~------l~~~a~~~LkpGG~lv~s~~~~~i~~~~~~~~v~~ 264 (305)
...... .....+|+|++|++. .|+.+. ...-+..+|+|+|.+++.+. ...+..
T Consensus 96 ~~~~~~~l~~~l~~~~~DvV~sD~ap~~~g~~~~Dh~r~~~L~~~a~~~a~~vL~~~G~fv~K~f-----qg~~~~---- 166 (205)
T COG0293 96 DEDTLEKLLEALGGAPVDVVLSDMAPNTSGNRSVDHARSMYLCELALEFALEVLKPGGSFVAKVF-----QGEDFE---- 166 (205)
T ss_pred CccHHHHHHHHcCCCCcceEEecCCCCcCCCccccHHHHHHHHHHHHHHHHHeeCCCCeEEEEEE-----eCCCHH----
Confidence 876432 122458999999983 122222 22246679999999999862 122222
Q ss_pred HHHHHHHHCCCcEeEEeecCCC--CCceEEEEEEEcC
Q 021911 265 SEVKKLQQDQFKPFEQVTLEPF--ERDHACVVGGYRM 299 (305)
Q Consensus 265 ~~~~~l~~~Gf~~~e~~~l~p~--~~~~~~vv~~~~~ 299 (305)
+.+..+++. |+.++....... +....++++...+
T Consensus 167 ~~l~~~~~~-F~~v~~~KP~aSR~~S~E~y~v~~~~~ 202 (205)
T COG0293 167 DLLKALRRL-FRKVKIFKPKASRKRSREIYLVAKGFK 202 (205)
T ss_pred HHHHHHHHh-hceeEEecCccccCCCceEEEEEeccc
Confidence 223444433 666655432221 2235666666544
|
|
| >TIGR03840 TMPT_Se_Te thiopurine S-methyltransferase, Se/Te detoxification family | Back alignment and domain information |
|---|
Probab=99.30 E-value=7.2e-11 Score=103.46 Aligned_cols=135 Identities=16% Similarity=0.128 Sum_probs=86.5
Q ss_pred CCCCCEEEEEecCCCccHHHHHhhhCCCcEEEEEeCChHHHHHHHHHHHc--------------CCCeEEEEccCCCCcc
Q 021911 141 IKPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKK--------------RTNVIPIIEDARHPAK 206 (305)
Q Consensus 141 ~~~g~~VLDlG~G~G~~t~~la~~~~~~~~V~avD~s~~~~~~l~~~a~~--------------~~nI~~~~~D~~~~~~ 206 (305)
+.++.+|||+|||.|..+..||++ ...|+|||+|+.+++.+.+.+.. ..+|+++++|+.++..
T Consensus 32 ~~~~~rvLd~GCG~G~da~~LA~~---G~~V~gvD~S~~Ai~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~ 108 (213)
T TIGR03840 32 LPAGARVFVPLCGKSLDLAWLAEQ---GHRVLGVELSEIAVEQFFAENGLTPTVTQQGEFTRYRAGNIEIFCGDFFALTA 108 (213)
T ss_pred CCCCCeEEEeCCCchhHHHHHHhC---CCeEEEEeCCHHHHHHHHHHcCCCcceeccccceeeecCceEEEEccCCCCCc
Confidence 356789999999999999999986 35899999999777754332211 1468899999987653
Q ss_pred cccCCCcEeEEEEeCC----ChhHHHHHHHHHhccCCCCcEEEEEEcccc-cCCCCchhhhHHHHHHHHHHCCCcEeEE
Q 021911 207 YRMLVGMVDVIFSDVA----QPDQARILALNASYFLKAGGHFVISIKANC-IDSTVPAEAVFQSEVKKLQQDQFKPFEQ 280 (305)
Q Consensus 207 ~~~~~~~fD~V~~d~~----~~~~~~~l~~~a~~~LkpGG~lv~s~~~~~-i~~~~~~~~v~~~~~~~l~~~Gf~~~e~ 280 (305)
. ....||.|+.... .+++...+..++.++|||||++++.+.... .....++..+-.+++..+-...|++...
T Consensus 109 ~--~~~~fD~i~D~~~~~~l~~~~R~~~~~~l~~lLkpgG~~ll~~~~~~~~~~~gpp~~~~~~eL~~~f~~~~~i~~~ 185 (213)
T TIGR03840 109 A--DLGPVDAVYDRAALIALPEEMRQRYAAHLLALLPPGARQLLITLDYDQSEMAGPPFSVSPAEVEALYGGHYEIELL 185 (213)
T ss_pred c--cCCCcCEEEechhhccCCHHHHHHHHHHHHHHcCCCCeEEEEEEEcCCCCCCCcCCCCCHHHHHHHhcCCceEEEE
Confidence 2 1246787774322 344444344499999999998777653211 1111233334455555554444555443
|
Members of this family are thiopurine S-methyltransferase from a branch in which at least some member proteins can perform selenium methylation as a means to detoxify selenium, or perform a related detoxification of tellurium. Note that the EC number definition does not specify a particular thiopurine, but rather represents a class of activity. |
| >PRK11088 rrmA 23S rRNA methyltransferase A; Provisional | Back alignment and domain information |
|---|
Probab=99.30 E-value=1.6e-11 Score=111.60 Aligned_cols=96 Identities=16% Similarity=0.180 Sum_probs=75.2
Q ss_pred CCCCEEEEEecCCCccHHHHHhhhCCC--cEEEEEeCChHHHHHHHHHHHcC-CCeEEEEccCCCCcccccCCCcEeEEE
Q 021911 142 KPGARVLYLGAASGTTVSHVSDIVGPN--GVVYAVEFSHRSGRDLVNMAKKR-TNVIPIIEDARHPAKYRMLVGMVDVIF 218 (305)
Q Consensus 142 ~~g~~VLDlG~G~G~~t~~la~~~~~~--~~V~avD~s~~~~~~l~~~a~~~-~nI~~~~~D~~~~~~~~~~~~~fD~V~ 218 (305)
.+..+|||+|||+|.++..+++.+... ..|+++|+|+ .+++.++++ +++.+++.|+.+.+. ..++||+|+
T Consensus 84 ~~~~~vLDiGcG~G~~~~~l~~~~~~~~~~~v~giD~s~----~~l~~A~~~~~~~~~~~~d~~~lp~---~~~sfD~I~ 156 (272)
T PRK11088 84 EKATALLDIGCGEGYYTHALADALPEITTMQLFGLDISK----VAIKYAAKRYPQVTFCVASSHRLPF---ADQSLDAII 156 (272)
T ss_pred CCCCeEEEECCcCCHHHHHHHHhcccccCCeEEEECCCH----HHHHHHHHhCCCCeEEEeecccCCC---cCCceeEEE
Confidence 456789999999999999999876422 3799999999 666666655 789999999877542 357999999
Q ss_pred EeCCChhHHHHHHHHHhccCCCCcEEEEEEc
Q 021911 219 SDVAQPDQARILALNASYFLKAGGHFVISIK 249 (305)
Q Consensus 219 ~d~~~~~~~~~l~~~a~~~LkpGG~lv~s~~ 249 (305)
+..... .+. ++.++|||||+|+++++
T Consensus 157 ~~~~~~----~~~-e~~rvLkpgG~li~~~p 182 (272)
T PRK11088 157 RIYAPC----KAE-ELARVVKPGGIVITVTP 182 (272)
T ss_pred EecCCC----CHH-HHHhhccCCCEEEEEeC
Confidence 865422 233 77899999999999874
|
|
| >COG2227 UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.30 E-value=1.1e-11 Score=108.43 Aligned_cols=98 Identities=24% Similarity=0.335 Sum_probs=73.6
Q ss_pred CCCCEEEEEecCCCccHHHHHhhhCCCcEEEEEeCChHHHHHHHHHHHcC-----CCeEEEEccCCCCcccccCCCcEeE
Q 021911 142 KPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKR-----TNVIPIIEDARHPAKYRMLVGMVDV 216 (305)
Q Consensus 142 ~~g~~VLDlG~G~G~~t~~la~~~~~~~~V~avD~s~~~~~~l~~~a~~~-----~nI~~~~~D~~~~~~~~~~~~~fD~ 216 (305)
-++.+|||+|||-|.++..+|+. + .+|+++|+|+ ++++.|+.. -+|.+.+..+.+.... .++||+
T Consensus 58 l~g~~vLDvGCGgG~Lse~mAr~-G--a~VtgiD~se----~~I~~Ak~ha~e~gv~i~y~~~~~edl~~~---~~~FDv 127 (243)
T COG2227 58 LPGLRVLDVGCGGGILSEPLARL-G--ASVTGIDASE----KPIEVAKLHALESGVNIDYRQATVEDLASA---GGQFDV 127 (243)
T ss_pred CCCCeEEEecCCccHhhHHHHHC-C--CeeEEecCCh----HHHHHHHHhhhhccccccchhhhHHHHHhc---CCCccE
Confidence 47899999999999999999987 2 6999999999 555555533 2344555555444321 269999
Q ss_pred EEEeCC---ChhHHHHHHHHHhccCCCCcEEEEEEcc
Q 021911 217 IFSDVA---QPDQARILALNASYFLKAGGHFVISIKA 250 (305)
Q Consensus 217 V~~d~~---~~~~~~~l~~~a~~~LkpGG~lv~s~~~ 250 (305)
|+|.-. .|+...++. ++.+++||+|.+++||..
T Consensus 128 V~cmEVlEHv~dp~~~~~-~c~~lvkP~G~lf~STin 163 (243)
T COG2227 128 VTCMEVLEHVPDPESFLR-ACAKLVKPGGILFLSTIN 163 (243)
T ss_pred EEEhhHHHccCCHHHHHH-HHHHHcCCCcEEEEeccc
Confidence 998443 455556666 999999999999999843
|
|
| >PRK11705 cyclopropane fatty acyl phospholipid synthase; Provisional | Back alignment and domain information |
|---|
Probab=99.30 E-value=5.2e-11 Score=113.16 Aligned_cols=102 Identities=22% Similarity=0.214 Sum_probs=76.8
Q ss_pred cccCCCCCCEEEEEecCCCccHHHHHhhhCCCcEEEEEeCChHHHHHHHHHHHcCCCeEEEEccCCCCcccccCCCcEeE
Q 021911 137 DNIWIKPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKRTNVIPIIEDARHPAKYRMLVGMVDV 216 (305)
Q Consensus 137 ~~~~~~~g~~VLDlG~G~G~~t~~la~~~~~~~~V~avD~s~~~~~~l~~~a~~~~nI~~~~~D~~~~~~~~~~~~~fD~ 216 (305)
+.+.++++.+|||+|||+|.++.++++.. ..+|+++|+|+..++.+.+.++ ..++++...|+... .++||+
T Consensus 161 ~~l~l~~g~rVLDIGcG~G~~a~~la~~~--g~~V~giDlS~~~l~~A~~~~~-~l~v~~~~~D~~~l------~~~fD~ 231 (383)
T PRK11705 161 RKLQLKPGMRVLDIGCGWGGLARYAAEHY--GVSVVGVTISAEQQKLAQERCA-GLPVEIRLQDYRDL------NGQFDR 231 (383)
T ss_pred HHhCCCCCCEEEEeCCCccHHHHHHHHHC--CCEEEEEeCCHHHHHHHHHHhc-cCeEEEEECchhhc------CCCCCE
Confidence 34467899999999999999999999875 3689999999955444443332 13577888887543 368999
Q ss_pred EEEeCC-----ChhHHHHHHHHHhccCCCCcEEEEEE
Q 021911 217 IFSDVA-----QPDQARILALNASYFLKAGGHFVISI 248 (305)
Q Consensus 217 V~~d~~-----~~~~~~~l~~~a~~~LkpGG~lv~s~ 248 (305)
|++... ..+....+. ++.++|||||++++.+
T Consensus 232 Ivs~~~~ehvg~~~~~~~l~-~i~r~LkpGG~lvl~~ 267 (383)
T PRK11705 232 IVSVGMFEHVGPKNYRTYFE-VVRRCLKPDGLFLLHT 267 (383)
T ss_pred EEEeCchhhCChHHHHHHHH-HHHHHcCCCcEEEEEE
Confidence 998544 233455666 9999999999999976
|
|
| >PRK12335 tellurite resistance protein TehB; Provisional | Back alignment and domain information |
|---|
Probab=99.29 E-value=4e-11 Score=109.80 Aligned_cols=97 Identities=23% Similarity=0.251 Sum_probs=75.4
Q ss_pred CCEEEEEecCCCccHHHHHhhhCCCcEEEEEeCChHHHHHHHHHHHcC-CCeEEEEccCCCCcccccCCCcEeEEEEeCC
Q 021911 144 GARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKR-TNVIPIIEDARHPAKYRMLVGMVDVIFSDVA 222 (305)
Q Consensus 144 g~~VLDlG~G~G~~t~~la~~~~~~~~V~avD~s~~~~~~l~~~a~~~-~nI~~~~~D~~~~~~~~~~~~~fD~V~~d~~ 222 (305)
..+|||+|||+|..+..+++. ..+|+++|+|+.+++.+.+.++.. .++.+.+.|+.... +.++||+|++...
T Consensus 121 ~~~vLDlGcG~G~~~~~la~~---g~~V~avD~s~~ai~~~~~~~~~~~l~v~~~~~D~~~~~----~~~~fD~I~~~~v 193 (287)
T PRK12335 121 PGKALDLGCGQGRNSLYLALL---GFDVTAVDINQQSLENLQEIAEKENLNIRTGLYDINSAS----IQEEYDFILSTVV 193 (287)
T ss_pred CCCEEEeCCCCCHHHHHHHHC---CCEEEEEECCHHHHHHHHHHHHHcCCceEEEEechhccc----ccCCccEEEEcch
Confidence 459999999999999999986 258999999997777766666543 47888888886643 2478999998765
Q ss_pred ----C-hhHHHHHHHHHhccCCCCcEEEEEE
Q 021911 223 ----Q-PDQARILALNASYFLKAGGHFVISI 248 (305)
Q Consensus 223 ----~-~~~~~~l~~~a~~~LkpGG~lv~s~ 248 (305)
. .+...++. ++.++|+|||++++..
T Consensus 194 l~~l~~~~~~~~l~-~~~~~LkpgG~~l~v~ 223 (287)
T PRK12335 194 LMFLNRERIPAIIK-NMQEHTNPGGYNLIVC 223 (287)
T ss_pred hhhCCHHHHHHHHH-HHHHhcCCCcEEEEEE
Confidence 2 24455665 9999999999977654
|
|
| >PRK04457 spermidine synthase; Provisional | Back alignment and domain information |
|---|
Probab=99.29 E-value=8.2e-11 Score=106.34 Aligned_cols=145 Identities=16% Similarity=0.156 Sum_probs=94.8
Q ss_pred CCCCEEEEEecCCCccHHHHHhhhCCCcEEEEEeCChHHHHHHHHHHHc---CCCeEEEEccCCCCcccccCCCcEeEEE
Q 021911 142 KPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKK---RTNVIPIIEDARHPAKYRMLVGMVDVIF 218 (305)
Q Consensus 142 ~~g~~VLDlG~G~G~~t~~la~~~~~~~~V~avD~s~~~~~~l~~~a~~---~~nI~~~~~D~~~~~~~~~~~~~fD~V~ 218 (305)
.+..+|||||||+|.++..++... +..+|++||+++..++.+.+.... .+++++++.|+.+.... ...+||+|+
T Consensus 65 ~~~~~vL~IG~G~G~l~~~l~~~~-p~~~v~~VEidp~vi~~A~~~f~~~~~~~rv~v~~~Da~~~l~~--~~~~yD~I~ 141 (262)
T PRK04457 65 PRPQHILQIGLGGGSLAKFIYTYL-PDTRQTAVEINPQVIAVARNHFELPENGERFEVIEADGAEYIAV--HRHSTDVIL 141 (262)
T ss_pred CCCCEEEEECCCHhHHHHHHHHhC-CCCeEEEEECCHHHHHHHHHHcCCCCCCCceEEEECCHHHHHHh--CCCCCCEEE
Confidence 445799999999999999999886 678999999999444433333221 15799999998765332 246899999
Q ss_pred EeCCCh-------hHHHHHHHHHhccCCCCcEEEEEEcccccCCCCchhhhHHHHHHHHHHCCCcEeEEeecCCCCCceE
Q 021911 219 SDVAQP-------DQARILALNASYFLKAGGHFVISIKANCIDSTVPAEAVFQSEVKKLQQDQFKPFEQVTLEPFERDHA 291 (305)
Q Consensus 219 ~d~~~~-------~~~~~l~~~a~~~LkpGG~lv~s~~~~~i~~~~~~~~v~~~~~~~l~~~Gf~~~e~~~l~p~~~~~~ 291 (305)
+|.... ...+++. ++.+.|+|+|.|++... ... ..+...++.|++. |... .+.+......+.
T Consensus 142 ~D~~~~~~~~~~l~t~efl~-~~~~~L~pgGvlvin~~----~~~----~~~~~~l~~l~~~-F~~~-~~~~~~~~~~N~ 210 (262)
T PRK04457 142 VDGFDGEGIIDALCTQPFFD-DCRNALSSDGIFVVNLW----SRD----KRYDRYLERLESS-FEGR-VLELPAESHGNV 210 (262)
T ss_pred EeCCCCCCCccccCcHHHHH-HHHHhcCCCcEEEEEcC----CCc----hhHHHHHHHHHHh-cCCc-EEEEecCCCccE
Confidence 986421 1256666 89999999999999641 111 1123345556544 6421 122223344567
Q ss_pred EEEEEEcCC
Q 021911 292 CVVGGYRMP 300 (305)
Q Consensus 292 ~vv~~~~~~ 300 (305)
++++.+..+
T Consensus 211 v~~a~~~~~ 219 (262)
T PRK04457 211 AVFAFKSAP 219 (262)
T ss_pred EEEEECCCC
Confidence 777766433
|
|
| >PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.29 E-value=1.2e-10 Score=114.35 Aligned_cols=122 Identities=21% Similarity=0.159 Sum_probs=86.4
Q ss_pred CCCEEEEEecCCCccHHHHHhhhCCCcEEEEEeCChHHHHHHHHHHHcC---CCeEEEEccCCCCcccccCCCcEeEEEE
Q 021911 143 PGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKR---TNVIPIIEDARHPAKYRMLVGMVDVIFS 219 (305)
Q Consensus 143 ~g~~VLDlG~G~G~~t~~la~~~~~~~~V~avD~s~~~~~~l~~~a~~~---~nI~~~~~D~~~~~~~~~~~~~fD~V~~ 219 (305)
+..+|||+|||+|..+..++..+ +..+|+++|+|+.++..+.++++.. .+|.+++.|+.... ...+||+|++
T Consensus 138 ~~~~VLDlG~GsG~iai~la~~~-p~~~v~avDis~~al~~A~~N~~~~~l~~~v~~~~~D~~~~~----~~~~fDlIvs 212 (506)
T PRK01544 138 KFLNILELGTGSGCIAISLLCEL-PNANVIATDISLDAIEVAKSNAIKYEVTDRIQIIHSNWFENI----EKQKFDFIVS 212 (506)
T ss_pred CCCEEEEccCchhHHHHHHHHHC-CCCeEEEEECCHHHHHHHHHHHHHcCCccceeeeecchhhhC----cCCCccEEEE
Confidence 34689999999999999999875 5679999999997766666665543 36889999975432 1358999999
Q ss_pred eCCC-----------------h-----------h-HHHHHHHHHhccCCCCcEEEEEEcccccCCCCchhhhHHHHHHHH
Q 021911 220 DVAQ-----------------P-----------D-QARILALNASYFLKAGGHFVISIKANCIDSTVPAEAVFQSEVKKL 270 (305)
Q Consensus 220 d~~~-----------------~-----------~-~~~~l~~~a~~~LkpGG~lv~s~~~~~i~~~~~~~~v~~~~~~~l 270 (305)
|+|. | + ...++. ++.++|+|+|.|++.+-. .... ...+.+
T Consensus 213 NPPYi~~~~~~~l~~~v~~~EP~~AL~gg~dGl~~~~~il~-~a~~~L~~gG~l~lEig~------~q~~----~v~~~~ 281 (506)
T PRK01544 213 NPPYISHSEKSEMAIETINYEPSIALFAEEDGLQAYFIIAE-NAKQFLKPNGKIILEIGF------KQEE----AVTQIF 281 (506)
T ss_pred CCCCCCchhhhhcCchhhccCcHHHhcCCccHHHHHHHHHH-HHHHhccCCCEEEEEECC------chHH----HHHHHH
Confidence 9981 0 1 122344 788999999999987611 1111 123445
Q ss_pred HHCCCcEeEE
Q 021911 271 QQDQFKPFEQ 280 (305)
Q Consensus 271 ~~~Gf~~~e~ 280 (305)
.+.+|..+++
T Consensus 282 ~~~g~~~~~~ 291 (506)
T PRK01544 282 LDHGYNIESV 291 (506)
T ss_pred HhcCCCceEE
Confidence 6778886654
|
|
| >PRK11805 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.27 E-value=7.9e-11 Score=108.78 Aligned_cols=98 Identities=24% Similarity=0.214 Sum_probs=77.2
Q ss_pred CEEEEEecCCCccHHHHHhhhCCCcEEEEEeCChHHHHHHHHHHHcC---CCeEEEEccCCCCcccccCCCcEeEEEEeC
Q 021911 145 ARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKR---TNVIPIIEDARHPAKYRMLVGMVDVIFSDV 221 (305)
Q Consensus 145 ~~VLDlG~G~G~~t~~la~~~~~~~~V~avD~s~~~~~~l~~~a~~~---~nI~~~~~D~~~~~~~~~~~~~fD~V~~d~ 221 (305)
.+|||+|||+|.++..++... +..+|+++|+|+.+++.+.++++.. .+|.+++.|+.+..+ ..+||+|++|+
T Consensus 135 ~~VLDlG~GsG~iai~la~~~-p~~~V~avDis~~al~~A~~n~~~~~l~~~i~~~~~D~~~~l~----~~~fDlIvsNP 209 (307)
T PRK11805 135 TRILDLCTGSGCIAIACAYAF-PDAEVDAVDISPDALAVAEINIERHGLEDRVTLIESDLFAALP----GRRYDLIVSNP 209 (307)
T ss_pred CEEEEEechhhHHHHHHHHHC-CCCEEEEEeCCHHHHHHHHHHHHHhCCCCcEEEEECchhhhCC----CCCccEEEECC
Confidence 689999999999999999875 5679999999997777666666544 359999999865321 35799999998
Q ss_pred CCh----------------------------hHHHHHHHHHhccCCCCcEEEEEE
Q 021911 222 AQP----------------------------DQARILALNASYFLKAGGHFVISI 248 (305)
Q Consensus 222 ~~~----------------------------~~~~~l~~~a~~~LkpGG~lv~s~ 248 (305)
|.. ....++. ++.++|+|||+|++.+
T Consensus 210 Pyi~~~~~~~l~~~~~~eP~~AL~gg~dGl~~~~~i~~-~a~~~L~pgG~l~~E~ 263 (307)
T PRK11805 210 PYVDAEDMADLPAEYRHEPELALAAGDDGLDLVRRILA-EAPDYLTEDGVLVVEV 263 (307)
T ss_pred CCCCccchhhcCHhhccCccceeeCCCchHHHHHHHHH-HHHHhcCCCCEEEEEE
Confidence 721 0134455 8999999999999987
|
|
| >TIGR02085 meth_trns_rumB 23S rRNA (uracil-5-)-methyltransferase RumB | Back alignment and domain information |
|---|
Probab=99.26 E-value=6.2e-11 Score=112.45 Aligned_cols=132 Identities=10% Similarity=0.038 Sum_probs=96.7
Q ss_pred CCCCEEEEEecCCCccHHHHHhhhCCCcEEEEEeCChHHHHHHHHHHHcC--CCeEEEEccCCCCcccccCCCcEeEEEE
Q 021911 142 KPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKR--TNVIPIIEDARHPAKYRMLVGMVDVIFS 219 (305)
Q Consensus 142 ~~g~~VLDlG~G~G~~t~~la~~~~~~~~V~avD~s~~~~~~l~~~a~~~--~nI~~~~~D~~~~~~~~~~~~~fD~V~~ 219 (305)
.++.+|||++||+|.+++.+|.. ...|++||+++.+++.+.++++.. +|+.+++.|+.+.... ....||+|++
T Consensus 232 ~~~~~vLDL~cG~G~~~l~la~~---~~~v~~vE~~~~av~~a~~N~~~~~~~~~~~~~~d~~~~~~~--~~~~~D~vi~ 306 (374)
T TIGR02085 232 IPVTQMWDLFCGVGGFGLHCAGP---DTQLTGIEIESEAIACAQQSAQMLGLDNLSFAALDSAKFATA--QMSAPELVLV 306 (374)
T ss_pred cCCCEEEEccCCccHHHHHHhhc---CCeEEEEECCHHHHHHHHHHHHHcCCCcEEEEECCHHHHHHh--cCCCCCEEEE
Confidence 35689999999999999999965 248999999998888777777655 5899999999664321 1246999999
Q ss_pred eCCChhHHHHHHHHHhccCCCCcEEEEEEcccccCCCCchhhhHHHHHHHHHHCCCcEeEEeecCCCCCceE
Q 021911 220 DVAQPDQARILALNASYFLKAGGHFVISIKANCIDSTVPAEAVFQSEVKKLQQDQFKPFEQVTLEPFERDHA 291 (305)
Q Consensus 220 d~~~~~~~~~l~~~a~~~LkpGG~lv~s~~~~~i~~~~~~~~v~~~~~~~l~~~Gf~~~e~~~l~p~~~~~~ 291 (305)
|+|.......+. .+...++|++.+++|. ....++..+..| .||++.+...++.|...+.
T Consensus 307 DPPr~G~~~~~l-~~l~~~~p~~ivyvsc----------~p~TlaRDl~~L--~gy~l~~~~~~DmFPqT~H 365 (374)
T TIGR02085 307 NPPRRGIGKELC-DYLSQMAPKFILYSSC----------NAQTMAKDIAEL--SGYQIERVQLFDMFPHTSH 365 (374)
T ss_pred CCCCCCCcHHHH-HHHHhcCCCeEEEEEe----------CHHHHHHHHHHh--cCceEEEEEEeccCCCCCc
Confidence 999543333332 2223578987777774 233467777777 6899999888887776443
|
This family consists of RNA methyltransferases designated RumB, formerly YbjF. Members act on 23S rRNA U747 and the equivalent position in other proteobacterial species. This family is homologous to the other 23S rRNA methyltransferase RumA and to the tRNA methyltransferase TrmA. |
| >KOG2360 consensus Proliferation-associated nucleolar protein (NOL1) [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.26 E-value=2e-11 Score=112.44 Aligned_cols=147 Identities=25% Similarity=0.295 Sum_probs=118.1
Q ss_pred ccccCCccccCcceeEeecCCCceeeeeecCchhhHHHHHHHccccccCCCCCCEEEEEecCCCccHHHHHhhhCCCcEE
Q 021911 92 KNLVAGEAVYNEKRISVQNEDGTKVEYRIWNPFRSKLAAAVLGGVDNIWIKPGARVLYLGAASGTTVSHVSDIVGPNGVV 171 (305)
Q Consensus 92 ~~~~~~~~~y~e~~~~~~d~~~~~~~~~~~~~~~s~l~a~ll~~l~~~~~~~g~~VLDlG~G~G~~t~~la~~~~~~~~V 171 (305)
.|.+.....|..+.+++||. .|++.+.+| ++.++.+|+|.||++|.+|+|+|.++.+.+++
T Consensus 181 ~n~i~~~~ly~~g~~ilqd~-------------asclpA~ll------~p~~g~~v~d~caapg~KTsH~a~i~~n~gki 241 (413)
T KOG2360|consen 181 SNFIVEHELYKNGKFILQDK-------------ASCLPAHLL------DPRPGSRVIDTCAAPGNKTSHLAAIMRNQGKI 241 (413)
T ss_pred CcceeeccccccCceEEech-------------hhcchhhhc------CCCCCCceeeeccccccchhhHHHHhhccCCc
Confidence 45566678999999999998 899999998 68889999999999999999999999889999
Q ss_pred EEEeCChHHHHHHHHHHHcC--CCeEEEEccCCCCcccccCCCcEeEEEEeCCC--------------------------
Q 021911 172 YAVEFSHRSGRDLVNMAKKR--TNVIPIIEDARHPAKYRMLVGMVDVIFSDVAQ-------------------------- 223 (305)
Q Consensus 172 ~avD~s~~~~~~l~~~a~~~--~nI~~~~~D~~~~~~~~~~~~~fD~V~~d~~~-------------------------- 223 (305)
+|+|.++.+++.+.++.+.. .+++.+.+|+... .+......+..|++|++|
T Consensus 242 ~afe~d~~r~~tl~~~l~~ag~~~~~~~~~df~~t-~~~~~~~~v~~iL~DpscSgSgm~~r~~~~~~~e~~~~~rL~~L 320 (413)
T KOG2360|consen 242 YAFERDAKRAATLRKLLKIAGVSIVESVEGDFLNT-ATPEKFRDVTYILVDPSCSGSGMVSRQDEDPGAETESPERLENL 320 (413)
T ss_pred chhhhhhHHHHHHHHHHHHcCCCccccccccccCC-CCcccccceeEEEeCCCCCCCccccceeeccCCCcccHHHHHHH
Confidence 99999999988888877654 6778889999775 332334678899999983
Q ss_pred -hhHHHHHHHHHhccCCCCcEEEEEEcccccCCCCchhhh
Q 021911 224 -PDQARILALNASYFLKAGGHFVISIKANCIDSTVPAEAV 262 (305)
Q Consensus 224 -~~~~~~l~~~a~~~LkpGG~lv~s~~~~~i~~~~~~~~v 262 (305)
..|..++. ++..+-+.. .++++| |++...+++.++
T Consensus 321 ~~fq~~~~~-hal~fp~~k-~vvyst--cs~~reene~vv 356 (413)
T KOG2360|consen 321 QSFQIRILK-HALTFPNLK-RLVYST--CSLHREENEQVV 356 (413)
T ss_pred HHHHHHHHH-HHhcCCchh-heeeec--chhhhhhhhHHH
Confidence 14566665 555554444 789998 777777777665
|
|
| >PRK13255 thiopurine S-methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.26 E-value=1.5e-10 Score=101.85 Aligned_cols=138 Identities=15% Similarity=0.071 Sum_probs=88.2
Q ss_pred CCCCCCEEEEEecCCCccHHHHHhhhCCCcEEEEEeCChHHHHHHHHHHHc--------------CCCeEEEEccCCCCc
Q 021911 140 WIKPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKK--------------RTNVIPIIEDARHPA 205 (305)
Q Consensus 140 ~~~~g~~VLDlG~G~G~~t~~la~~~~~~~~V~avD~s~~~~~~l~~~a~~--------------~~nI~~~~~D~~~~~ 205 (305)
.+.++.+|||+|||.|..+.+||+. ...|+|||+|+.+++.+.+.... ..+|.+.++|+.++.
T Consensus 34 ~~~~~~rvL~~gCG~G~da~~LA~~---G~~V~avD~s~~Ai~~~~~~~~l~~~~~~~~~~~~~~~~~v~~~~~D~~~l~ 110 (218)
T PRK13255 34 ALPAGSRVLVPLCGKSLDMLWLAEQ---GHEVLGVELSELAVEQFFAENGLTPQTRQSGEFEHYQAGEITIYCGDFFALT 110 (218)
T ss_pred CCCCCCeEEEeCCCChHhHHHHHhC---CCeEEEEccCHHHHHHHHHHcCCCccccccccccccccCceEEEECcccCCC
Confidence 3456789999999999999999986 35899999999777765332110 146888999998875
Q ss_pred ccccCCCcEeEEEEeCC----ChhHHHHHHHHHhccCCCCcEEEEEEcccc-cCCCCchhhhHHHHHHHHHHCCCcEeEE
Q 021911 206 KYRMLVGMVDVIFSDVA----QPDQARILALNASYFLKAGGHFVISIKANC-IDSTVPAEAVFQSEVKKLQQDQFKPFEQ 280 (305)
Q Consensus 206 ~~~~~~~~fD~V~~d~~----~~~~~~~l~~~a~~~LkpGG~lv~s~~~~~-i~~~~~~~~v~~~~~~~l~~~Gf~~~e~ 280 (305)
.. ....||+|+-... .+.....+...+.++|||||++++.+.... .....++..+-.+++..+-...|+++..
T Consensus 111 ~~--~~~~fd~v~D~~~~~~l~~~~R~~~~~~l~~lL~pgG~~~l~~~~~~~~~~~gPp~~~~~~el~~~~~~~~~i~~~ 188 (218)
T PRK13255 111 AA--DLADVDAVYDRAALIALPEEMRERYVQQLAALLPAGCRGLLVTLDYPQEELAGPPFSVSDEEVEALYAGCFEIELL 188 (218)
T ss_pred cc--cCCCeeEEEehHhHhhCCHHHHHHHHHHHHHHcCCCCeEEEEEEEeCCccCCCCCCCCCHHHHHHHhcCCceEEEe
Confidence 33 2358899984222 344434444499999999997665442111 1111223334455555554444666654
Q ss_pred ee
Q 021911 281 VT 282 (305)
Q Consensus 281 ~~ 282 (305)
..
T Consensus 189 ~~ 190 (218)
T PRK13255 189 ER 190 (218)
T ss_pred ee
Confidence 43
|
|
| >COG2265 TrmA SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.26 E-value=5.9e-11 Score=113.89 Aligned_cols=148 Identities=22% Similarity=0.153 Sum_probs=108.4
Q ss_pred HHHHHHHccccccCCCCCCEEEEEecCCCccHHHHHhhhCCCcEEEEEeCChHHHHHHHHHHHcC--CCeEEEEccCCCC
Q 021911 127 KLAAAVLGGVDNIWIKPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKR--TNVIPIIEDARHP 204 (305)
Q Consensus 127 ~l~a~ll~~l~~~~~~~g~~VLDlG~G~G~~t~~la~~~~~~~~V~avD~s~~~~~~l~~~a~~~--~nI~~~~~D~~~~ 204 (305)
+|...+++.+ ...++++|||+-||.|++++++|..+ .+|++||+++.+++.+.++|+.+ .|++++..|+.+.
T Consensus 280 kl~~~a~~~~---~~~~~~~vlDlYCGvG~f~l~lA~~~---~~V~gvEi~~~aV~~A~~NA~~n~i~N~~f~~~~ae~~ 353 (432)
T COG2265 280 KLYETALEWL---ELAGGERVLDLYCGVGTFGLPLAKRV---KKVHGVEISPEAVEAAQENAAANGIDNVEFIAGDAEEF 353 (432)
T ss_pred HHHHHHHHHH---hhcCCCEEEEeccCCChhhhhhcccC---CEEEEEecCHHHHHHHHHHHHHcCCCcEEEEeCCHHHH
Confidence 4444444333 46678999999999999999999775 48999999999999998888887 7899999999777
Q ss_pred cccccCCCcEeEEEEeCCChhHHHHHHHHHhccCCCCcEEEEEEcccccCCCCchhhhHHHHHHHHHHCCCcEeEEeecC
Q 021911 205 AKYRMLVGMVDVIFSDVAQPDQARILALNASYFLKAGGHFVISIKANCIDSTVPAEAVFQSEVKKLQQDQFKPFEQVTLE 284 (305)
Q Consensus 205 ~~~~~~~~~fD~V~~d~~~~~~~~~l~~~a~~~LkpGG~lv~s~~~~~i~~~~~~~~v~~~~~~~l~~~Gf~~~e~~~l~ 284 (305)
.........+|+||+|+|-.-..+.+. +....++|-..+++| | |+ ..++..+..|.+.||++.++..++
T Consensus 354 ~~~~~~~~~~d~VvvDPPR~G~~~~~l-k~l~~~~p~~IvYVS----C-----NP-~TlaRDl~~L~~~gy~i~~v~~~D 422 (432)
T COG2265 354 TPAWWEGYKPDVVVVDPPRAGADREVL-KQLAKLKPKRIVYVS----C-----NP-ATLARDLAILASTGYEIERVQPFD 422 (432)
T ss_pred hhhccccCCCCEEEECCCCCCCCHHHH-HHHHhcCCCcEEEEe----C-----CH-HHHHHHHHHHHhCCeEEEEEEEec
Confidence 544222358899999999433222222 333467777677776 3 23 345778888999999988887777
Q ss_pred CCCCceE
Q 021911 285 PFERDHA 291 (305)
Q Consensus 285 p~~~~~~ 291 (305)
.|...|.
T Consensus 423 mFP~T~H 429 (432)
T COG2265 423 MFPHTHH 429 (432)
T ss_pred cCCCccc
Confidence 6665543
|
|
| >PLN02336 phosphoethanolamine N-methyltransferase | Back alignment and domain information |
|---|
Probab=99.26 E-value=5.9e-11 Score=116.02 Aligned_cols=104 Identities=24% Similarity=0.286 Sum_probs=77.6
Q ss_pred CCCCCCEEEEEecCCCccHHHHHhhhCCCcEEEEEeCChHHHHHHHHHHHcCCCeEEEEccCCCCcccccCCCcEeEEEE
Q 021911 140 WIKPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKRTNVIPIIEDARHPAKYRMLVGMVDVIFS 219 (305)
Q Consensus 140 ~~~~g~~VLDlG~G~G~~t~~la~~~~~~~~V~avD~s~~~~~~l~~~a~~~~nI~~~~~D~~~~~~~~~~~~~fD~V~~ 219 (305)
...++.+|||+|||+|.++..+++.. .+|+++|+|+.++....+.....+++.+++.|+..... .....+||+|++
T Consensus 34 ~~~~~~~vLDlGcG~G~~~~~la~~~---~~v~giD~s~~~l~~a~~~~~~~~~i~~~~~d~~~~~~-~~~~~~fD~I~~ 109 (475)
T PLN02336 34 PPYEGKSVLELGAGIGRFTGELAKKA---GQVIALDFIESVIKKNESINGHYKNVKFMCADVTSPDL-NISDGSVDLIFS 109 (475)
T ss_pred CccCCCEEEEeCCCcCHHHHHHHhhC---CEEEEEeCCHHHHHHHHHHhccCCceEEEEeccccccc-CCCCCCEEEEeh
Confidence 34567899999999999999999874 38999999996655433322223689999999964321 123468999999
Q ss_pred eCCC---h--hHHHHHHHHHhccCCCCcEEEEEE
Q 021911 220 DVAQ---P--DQARILALNASYFLKAGGHFVISI 248 (305)
Q Consensus 220 d~~~---~--~~~~~l~~~a~~~LkpGG~lv~s~ 248 (305)
+.+. + +..+++. ++.++|||+|+|++..
T Consensus 110 ~~~l~~l~~~~~~~~l~-~~~r~Lk~gG~l~~~d 142 (475)
T PLN02336 110 NWLLMYLSDKEVENLAE-RMVKWLKVGGYIFFRE 142 (475)
T ss_pred hhhHHhCCHHHHHHHHH-HHHHhcCCCeEEEEEe
Confidence 7762 2 2356666 9999999999999976
|
|
| >PRK00312 pcm protein-L-isoaspartate O-methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.25 E-value=1.2e-10 Score=101.91 Aligned_cols=99 Identities=26% Similarity=0.280 Sum_probs=76.4
Q ss_pred CCCCCCEEEEEecCCCccHHHHHhhhCCCcEEEEEeCChHHHHHHHHHHHcC--CCeEEEEccCCCCcccccCCCcEeEE
Q 021911 140 WIKPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKR--TNVIPIIEDARHPAKYRMLVGMVDVI 217 (305)
Q Consensus 140 ~~~~g~~VLDlG~G~G~~t~~la~~~~~~~~V~avD~s~~~~~~l~~~a~~~--~nI~~~~~D~~~~~~~~~~~~~fD~V 217 (305)
.++++.+|||+|||+|.++..++... .+|+++|+++..+..+.+.+++. .++.+++.|+..... ...+||+|
T Consensus 75 ~~~~~~~VLeiG~GsG~~t~~la~~~---~~v~~vd~~~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~---~~~~fD~I 148 (212)
T PRK00312 75 ELKPGDRVLEIGTGSGYQAAVLAHLV---RRVFSVERIKTLQWEAKRRLKQLGLHNVSVRHGDGWKGWP---AYAPFDRI 148 (212)
T ss_pred CCCCCCEEEEECCCccHHHHHHHHHh---CEEEEEeCCHHHHHHHHHHHHHCCCCceEEEECCcccCCC---cCCCcCEE
Confidence 57788999999999999999888874 38999999996655555554433 579999999865422 13689999
Q ss_pred EEeCCChhHHHHHHHHHhccCCCCcEEEEEE
Q 021911 218 FSDVAQPDQARILALNASYFLKAGGHFVISI 248 (305)
Q Consensus 218 ~~d~~~~~~~~~l~~~a~~~LkpGG~lv~s~ 248 (305)
+++.+.+... . .+.+.|+|||.|++.+
T Consensus 149 ~~~~~~~~~~---~-~l~~~L~~gG~lv~~~ 175 (212)
T PRK00312 149 LVTAAAPEIP---R-ALLEQLKEGGILVAPV 175 (212)
T ss_pred EEccCchhhh---H-HHHHhcCCCcEEEEEE
Confidence 9988755433 2 5568999999999987
|
|
| >PRK13943 protein-L-isoaspartate O-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.24 E-value=1e-10 Score=108.39 Aligned_cols=112 Identities=28% Similarity=0.356 Sum_probs=82.8
Q ss_pred HHHHHHHccccccCCCCCCEEEEEecCCCccHHHHHhhhCCCcEEEEEeCChHHHHHHHHHHHcC--CCeEEEEccCCCC
Q 021911 127 KLAAAVLGGVDNIWIKPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKR--TNVIPIIEDARHP 204 (305)
Q Consensus 127 ~l~a~ll~~l~~~~~~~g~~VLDlG~G~G~~t~~la~~~~~~~~V~avD~s~~~~~~l~~~a~~~--~nI~~~~~D~~~~ 204 (305)
.+.+.++..+ .++++.+|||+|||+|.++..+++.++..+.|+++|+++..++.+.+.+++. +++++++.|+...
T Consensus 67 ~l~a~ll~~L---~i~~g~~VLDIG~GtG~~a~~LA~~~~~~g~VvgVDis~~~l~~Ar~~l~~~g~~nV~~i~gD~~~~ 143 (322)
T PRK13943 67 SLMALFMEWV---GLDKGMRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVRRLGIENVIFVCGDGYYG 143 (322)
T ss_pred HHHHHHHHhc---CCCCCCEEEEEeCCccHHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHHHHcCCCcEEEEeCChhhc
Confidence 3444554333 5778899999999999999999998765568999999996655544444433 5799999998655
Q ss_pred cccccCCCcEeEEEEeCCChhHHHHHHHHHhccCCCCcEEEEEE
Q 021911 205 AKYRMLVGMVDVIFSDVAQPDQARILALNASYFLKAGGHFVISI 248 (305)
Q Consensus 205 ~~~~~~~~~fD~V~~d~~~~~~~~~l~~~a~~~LkpGG~lv~s~ 248 (305)
... ..+||+|+++...+.... .+.+.|+|+|.+++..
T Consensus 144 ~~~---~~~fD~Ii~~~g~~~ip~----~~~~~LkpgG~Lvv~~ 180 (322)
T PRK13943 144 VPE---FAPYDVIFVTVGVDEVPE----TWFTQLKEGGRVIVPI 180 (322)
T ss_pred ccc---cCCccEEEECCchHHhHH----HHHHhcCCCCEEEEEe
Confidence 322 257999999877555443 3457899999998865
|
|
| >KOG2915 consensus tRNA(1-methyladenosine) methyltransferase, subunit GCD14 [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.24 E-value=2.6e-10 Score=100.82 Aligned_cols=135 Identities=25% Similarity=0.360 Sum_probs=104.9
Q ss_pred CCCCCCEEEEEecCCCccHHHHHhhhCCCcEEEEEeCChHHHHHHHHHHHcC---CCeEEEEccCCCCcccccCCCcEeE
Q 021911 140 WIKPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKR---TNVIPIIEDARHPAKYRMLVGMVDV 216 (305)
Q Consensus 140 ~~~~g~~VLDlG~G~G~~t~~la~~~~~~~~V~avD~s~~~~~~l~~~a~~~---~nI~~~~~D~~~~~~~~~~~~~fD~ 216 (305)
.+.|+.+|||.|+|+|.++..+|..++|.+.++.+|+.+.+....++..++. +|+.+++.|+...-.. .....+|.
T Consensus 102 ~i~PGsvV~EsGTGSGSlShaiaraV~ptGhl~tfefH~~Ra~ka~eeFr~hgi~~~vt~~hrDVc~~GF~-~ks~~aDa 180 (314)
T KOG2915|consen 102 EIRPGSVVLESGTGSGSLSHAIARAVAPTGHLYTFEFHETRAEKALEEFREHGIGDNVTVTHRDVCGSGFL-IKSLKADA 180 (314)
T ss_pred cCCCCCEEEecCCCcchHHHHHHHhhCcCcceEEEEecHHHHHHHHHHHHHhCCCcceEEEEeecccCCcc-ccccccce
Confidence 6999999999999999999999999999999999999987777777776665 7999999999765422 12468999
Q ss_pred EEEeCCChhHHHHHHHHHhccCCCCcEEEEEEcccccCCCCchhhhHHHHHHHHHHCCCcEeEEeecCCC
Q 021911 217 IFSDVAQPDQARILALNASYFLKAGGHFVISIKANCIDSTVPAEAVFQSEVKKLQQDQFKPFEQVTLEPF 286 (305)
Q Consensus 217 V~~d~~~~~~~~~l~~~a~~~LkpGG~lv~s~~~~~i~~~~~~~~v~~~~~~~l~~~Gf~~~e~~~l~p~ 286 (305)
|++|+|.|+.+ + ..++..||.+|.-+++. ..||.. .....+.|.+.||.-++++.+.+-
T Consensus 181 VFLDlPaPw~A--i-Pha~~~lk~~g~r~csF-SPCIEQ-------vqrtce~l~~~gf~~i~~vEv~~~ 239 (314)
T KOG2915|consen 181 VFLDLPAPWEA--I-PHAAKILKDEGGRLCSF-SPCIEQ-------VQRTCEALRSLGFIEIETVEVLLV 239 (314)
T ss_pred EEEcCCChhhh--h-hhhHHHhhhcCceEEec-cHHHHH-------HHHHHHHHHhCCCceEEEEEeehh
Confidence 99999999866 2 36667999887544433 134322 234567778889998888877663
|
|
| >PLN03075 nicotianamine synthase; Provisional | Back alignment and domain information |
|---|
Probab=99.24 E-value=1.9e-10 Score=104.78 Aligned_cols=148 Identities=9% Similarity=0.084 Sum_probs=98.4
Q ss_pred CCCCCEEEEEecCCCccHHH-HHhhhCCCcEEEEEeCChHHHHHHHHHHHc-C---CCeEEEEccCCCCcccccCCCcEe
Q 021911 141 IKPGARVLYLGAASGTTVSH-VSDIVGPNGVVYAVEFSHRSGRDLVNMAKK-R---TNVIPIIEDARHPAKYRMLVGMVD 215 (305)
Q Consensus 141 ~~~g~~VLDlG~G~G~~t~~-la~~~~~~~~V~avD~s~~~~~~l~~~a~~-~---~nI~~~~~D~~~~~~~~~~~~~fD 215 (305)
..+.++|||||||+|.++.. ++....+.++++++|+++.++....+.++. . ++|.|++.|+.+.... ...||
T Consensus 121 ~~~p~~VldIGcGpgpltaiilaa~~~p~~~~~giD~d~~ai~~Ar~~~~~~~gL~~rV~F~~~Da~~~~~~---l~~FD 197 (296)
T PLN03075 121 NGVPTKVAFVGSGPLPLTSIVLAKHHLPTTSFHNFDIDPSANDVARRLVSSDPDLSKRMFFHTADVMDVTES---LKEYD 197 (296)
T ss_pred cCCCCEEEEECCCCcHHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHhhhccCccCCcEEEECchhhcccc---cCCcC
Confidence 34679999999998865444 343445788999999999777666666643 1 5799999999875321 36899
Q ss_pred EEEEeCC----ChhHHHHHHHHHhccCCCCcEEEEEEcccccCCCCchhhhHHHHHHHHHHCCCcEeEEeecCCCCCceE
Q 021911 216 VIFSDVA----QPDQARILALNASYFLKAGGHFVISIKANCIDSTVPAEAVFQSEVKKLQQDQFKPFEQVTLEPFERDHA 291 (305)
Q Consensus 216 ~V~~d~~----~~~~~~~l~~~a~~~LkpGG~lv~s~~~~~i~~~~~~~~v~~~~~~~l~~~Gf~~~e~~~l~p~~~~~~ 291 (305)
+|++++. .+++.+++. ++++.|+|||.|++-+.. - ....+-..++.-.-.||++...++-.+- --+-
T Consensus 198 lVF~~ALi~~dk~~k~~vL~-~l~~~LkPGG~Lvlr~~~-G------~r~~LYp~v~~~~~~gf~~~~~~~P~~~-v~Ns 268 (296)
T PLN03075 198 VVFLAALVGMDKEEKVKVIE-HLGKHMAPGALLMLRSAH-G------ARAFLYPVVDPCDLRGFEVLSVFHPTDE-VINS 268 (296)
T ss_pred EEEEecccccccccHHHHHH-HHHHhcCCCcEEEEeccc-c------hHhhcCCCCChhhCCCeEEEEEECCCCC-ceee
Confidence 9999953 367888887 999999999999997610 0 1111111111111238887765543332 3566
Q ss_pred EEEEEEcCC
Q 021911 292 CVVGGYRMP 300 (305)
Q Consensus 292 ~vv~~~~~~ 300 (305)
+|+++++.-
T Consensus 269 vi~~r~~~~ 277 (296)
T PLN03075 269 VIIARKPGG 277 (296)
T ss_pred EEEEEeecC
Confidence 677777643
|
|
| >COG1092 Predicted SAM-dependent methyltransferases [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.23 E-value=1.4e-10 Score=109.43 Aligned_cols=139 Identities=22% Similarity=0.113 Sum_probs=96.8
Q ss_pred CCEEEEEecCCCccHHHHHhhhCCCcEEEEEeCChHHHHHHHHHHHcC----CCeEEEEccCCCCccccc-CCCcEeEEE
Q 021911 144 GARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKR----TNVIPIIEDARHPAKYRM-LVGMVDVIF 218 (305)
Q Consensus 144 g~~VLDlG~G~G~~t~~la~~~~~~~~V~avD~s~~~~~~l~~~a~~~----~nI~~~~~D~~~~~~~~~-~~~~fD~V~ 218 (305)
+.+|||++|=||.++.|+|.. ...+|++||+|.+++.-+.++++.+ ..+.+++.|+.+...... ...+||+||
T Consensus 218 GkrvLNlFsYTGgfSv~Aa~g--GA~~vt~VD~S~~al~~a~~N~~LNg~~~~~~~~i~~Dvf~~l~~~~~~g~~fDlIi 295 (393)
T COG1092 218 GKRVLNLFSYTGGFSVHAALG--GASEVTSVDLSKRALEWARENAELNGLDGDRHRFIVGDVFKWLRKAERRGEKFDLII 295 (393)
T ss_pred CCeEEEecccCcHHHHHHHhc--CCCceEEEeccHHHHHHHHHHHHhcCCCccceeeehhhHHHHHHHHHhcCCcccEEE
Confidence 899999999999999999975 5569999999997777666666655 457899999987754321 224999999
Q ss_pred EeCC------------ChhHHHHHHHHHhccCCCCcEEEEEEcccccCCCCchhhhHHHHH-HHHHHCCCcEeEEeecCC
Q 021911 219 SDVA------------QPDQARILALNASYFLKAGGHFVISIKANCIDSTVPAEAVFQSEV-KKLQQDQFKPFEQVTLEP 285 (305)
Q Consensus 219 ~d~~------------~~~~~~~l~~~a~~~LkpGG~lv~s~~~~~i~~~~~~~~v~~~~~-~~l~~~Gf~~~e~~~l~p 285 (305)
+||| +.+...++. .+.++|+|||.+++++ |+-... ...|.+.+ ..+...+.....+ ....
T Consensus 296 lDPPsF~r~k~~~~~~~rdy~~l~~-~~~~iL~pgG~l~~~s--~~~~~~---~~~f~~~i~~a~~~~~~~~~~~-~~~~ 368 (393)
T COG1092 296 LDPPSFARSKKQEFSAQRDYKDLND-LALRLLAPGGTLVTSS--CSRHFS---SDLFLEIIARAAAAAGRRAQEI-EGEG 368 (393)
T ss_pred ECCcccccCcccchhHHHHHHHHHH-HHHHHcCCCCEEEEEe--cCCccC---HHHHHHHHHHHHHhcCCcEEEe-eccC
Confidence 9999 234556666 8999999999999998 442222 22333333 3334454444333 2344
Q ss_pred CCCceE
Q 021911 286 FERDHA 291 (305)
Q Consensus 286 ~~~~~~ 291 (305)
...||.
T Consensus 369 ~~~D~p 374 (393)
T COG1092 369 QPPDHP 374 (393)
T ss_pred CCCCcc
Confidence 445554
|
|
| >PRK01581 speE spermidine synthase; Validated | Back alignment and domain information |
|---|
Probab=99.23 E-value=3.2e-10 Score=105.62 Aligned_cols=143 Identities=24% Similarity=0.297 Sum_probs=102.1
Q ss_pred CCEEEEEecCCCccHHHHHhhhCCCcEEEEEeCChHHHHHHHHHHHc-------------CCCeEEEEccCCCCcccccC
Q 021911 144 GARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKK-------------RTNVIPIIEDARHPAKYRML 210 (305)
Q Consensus 144 g~~VLDlG~G~G~~t~~la~~~~~~~~V~avD~s~~~~~~l~~~a~~-------------~~nI~~~~~D~~~~~~~~~~ 210 (305)
..+||++|||.|..+..+++. .+..+|++||+++ ++++.|++ .+++++++.|+...... .
T Consensus 151 PkrVLIIGgGdG~tlrelLk~-~~v~~It~VEIDp----eVIelAr~~~~L~~~~~~~~~DpRV~vvi~Da~~fL~~--~ 223 (374)
T PRK01581 151 PKRVLILGGGDGLALREVLKY-ETVLHVDLVDLDG----SMINMARNVPELVSLNKSAFFDNRVNVHVCDAKEFLSS--P 223 (374)
T ss_pred CCEEEEECCCHHHHHHHHHhc-CCCCeEEEEeCCH----HHHHHHHhccccchhccccCCCCceEEEECcHHHHHHh--c
Confidence 369999999999988888875 2346899999999 55555553 26899999999875432 2
Q ss_pred CCcEeEEEEeCCChh--------HHHHHHHHHhccCCCCcEEEEEEcccccCCCCchhhhHHHHHHHHHHCCCcEeEEee
Q 021911 211 VGMVDVIFSDVAQPD--------QARILALNASYFLKAGGHFVISIKANCIDSTVPAEAVFQSEVKKLQQDQFKPFEQVT 282 (305)
Q Consensus 211 ~~~fD~V~~d~~~~~--------~~~~l~~~a~~~LkpGG~lv~s~~~~~i~~~~~~~~v~~~~~~~l~~~Gf~~~e~~~ 282 (305)
...||+|++|.+.|. ..+.+. .+.+.|+|+|.|++.. .+. .....++......|++.++.......
T Consensus 224 ~~~YDVIIvDl~DP~~~~~~~LyT~EFy~-~~~~~LkPgGV~V~Qs--~sp---~~~~~~~~~i~~tL~~af~~v~~y~t 297 (374)
T PRK01581 224 SSLYDVIIIDFPDPATELLSTLYTSELFA-RIATFLTEDGAFVCQS--NSP---ADAPLVYWSIGNTIEHAGLTVKSYHT 297 (374)
T ss_pred CCCccEEEEcCCCccccchhhhhHHHHHH-HHHHhcCCCcEEEEec--CCh---hhhHHHHHHHHHHHHHhCCceEEEEE
Confidence 468999999987542 134555 8999999999998874 221 11233445566788888888887666
Q ss_pred cCC-CCCceEEEEEEEcC
Q 021911 283 LEP-FERDHACVVGGYRM 299 (305)
Q Consensus 283 l~p-~~~~~~~vv~~~~~ 299 (305)
.-| |...+.+++|.+..
T Consensus 298 ~vPsyg~~WgF~~as~~~ 315 (374)
T PRK01581 298 IVPSFGTDWGFHIAANSA 315 (374)
T ss_pred ecCCCCCceEEEEEeCCc
Confidence 544 54448888887643
|
|
| >PF02390 Methyltransf_4: Putative methyltransferase ; InterPro: IPR003358 This entry represents tRNA (guanine-N-7) methyltransferase (2 | Back alignment and domain information |
|---|
Probab=99.22 E-value=7e-11 Score=102.15 Aligned_cols=126 Identities=21% Similarity=0.289 Sum_probs=93.0
Q ss_pred CCCEEEEEecCCCccHHHHHhhhCCCcEEEEEeCChHHHHHHHHHHHcC--CCeEEEEccCCCCcccccCCCcEeEEEEe
Q 021911 143 PGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKR--TNVIPIIEDARHPAKYRMLVGMVDVIFSD 220 (305)
Q Consensus 143 ~g~~VLDlG~G~G~~t~~la~~~~~~~~V~avD~s~~~~~~l~~~a~~~--~nI~~~~~D~~~~~~~~~~~~~fD~V~~d 220 (305)
+...+||||||.|.++.++|... |+..+++||++...+..+.+.+.+. +|+.+++.|+.........++++|.|+++
T Consensus 17 ~~~l~lEIG~G~G~~l~~~A~~~-Pd~n~iGiE~~~~~v~~a~~~~~~~~l~Nv~~~~~da~~~l~~~~~~~~v~~i~i~ 95 (195)
T PF02390_consen 17 DNPLILEIGCGKGEFLIELAKRN-PDINFIGIEIRKKRVAKALRKAEKRGLKNVRFLRGDARELLRRLFPPGSVDRIYIN 95 (195)
T ss_dssp CCEEEEEET-TTSHHHHHHHHHS-TTSEEEEEES-HHHHHHHHHHHHHHTTSSEEEEES-CTTHHHHHSTTTSEEEEEEE
T ss_pred CCCeEEEecCCCCHHHHHHHHHC-CCCCEEEEecchHHHHHHHHHHHhhcccceEEEEccHHHHHhhcccCCchheEEEe
Confidence 33499999999999999999985 7889999999998887777776654 89999999998855443445899999999
Q ss_pred CCChh-----------HHHHHHHHHhccCCCCcEEEEEEcccccCCCCchhhhHHHHHHHHHH--CCCcEeE
Q 021911 221 VAQPD-----------QARILALNASYFLKAGGHFVISIKANCIDSTVPAEAVFQSEVKKLQQ--DQFKPFE 279 (305)
Q Consensus 221 ~~~~~-----------~~~~l~~~a~~~LkpGG~lv~s~~~~~i~~~~~~~~v~~~~~~~l~~--~Gf~~~e 279 (305)
.|.|+ +...+. .+++.|+|||.|.+.| +...++...++.+.+ ..|+...
T Consensus 96 FPDPWpK~rH~krRl~~~~fl~-~~~~~L~~gG~l~~~T---------D~~~y~~~~~~~~~~~~~~f~~~~ 157 (195)
T PF02390_consen 96 FPDPWPKKRHHKRRLVNPEFLE-LLARVLKPGGELYFAT---------DVEEYAEWMLEQFEESHPGFENIE 157 (195)
T ss_dssp S-----SGGGGGGSTTSHHHHH-HHHHHEEEEEEEEEEE---------S-HHHHHHHHHHHHHHSTTEEEE-
T ss_pred CCCCCcccchhhhhcCCchHHH-HHHHHcCCCCEEEEEe---------CCHHHHHHHHHHHHhcCcCeEEcc
Confidence 99653 555665 7889999999999998 344455555666655 4777663
|
1.1.33 from EC), which catalyses the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA. Capping of the pre-mRNA 5' end by addition a monomethylated guanosine cap (m(7)G) is an essential and the earliest modification in the biogenesis of mRNA []. The reaction is catalysed by three enzymes: triphosphatase, guanylyltransferase, and tRNA (guanine-N-7) methyltransferase [, ].; GO: 0008176 tRNA (guanine-N7-)-methyltransferase activity, 0006400 tRNA modification; PDB: 3DXZ_A 3DXY_A 3DXX_A 3CKK_A 3P2I_B 3P2K_D 3P2E_A 3MTE_B 3PB3_B 1YZH_B .... |
| >TIGR02716 C20_methyl_CrtF C-20 methyltransferase BchU | Back alignment and domain information |
|---|
Probab=99.21 E-value=3.8e-10 Score=104.24 Aligned_cols=101 Identities=11% Similarity=0.078 Sum_probs=74.9
Q ss_pred CCCCCCEEEEEecCCCccHHHHHhhhCCCcEEEEEeCChHHHHHHHHHHHcC---CCeEEEEccCCCCcccccCCCcEeE
Q 021911 140 WIKPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKR---TNVIPIIEDARHPAKYRMLVGMVDV 216 (305)
Q Consensus 140 ~~~~g~~VLDlG~G~G~~t~~la~~~~~~~~V~avD~s~~~~~~l~~~a~~~---~nI~~~~~D~~~~~~~~~~~~~fD~ 216 (305)
..++..+|||+|||+|.++..+++.+ |..+++++|+ +..++...+.+.+. ++|+++..|+.+.+ .+.+|+
T Consensus 146 ~~~~~~~vlDiG~G~G~~~~~~~~~~-p~~~~~~~D~-~~~~~~a~~~~~~~gl~~rv~~~~~d~~~~~-----~~~~D~ 218 (306)
T TIGR02716 146 KLDGVKKMIDVGGGIGDISAAMLKHF-PELDSTILNL-PGAIDLVNENAAEKGVADRMRGIAVDIYKES-----YPEADA 218 (306)
T ss_pred CCCCCCEEEEeCCchhHHHHHHHHHC-CCCEEEEEec-HHHHHHHHHHHHhCCccceEEEEecCccCCC-----CCCCCE
Confidence 56778899999999999999999986 6789999997 54444444444332 57999999987542 124698
Q ss_pred EEEeCC----Chh-HHHHHHHHHhccCCCCcEEEEEE
Q 021911 217 IFSDVA----QPD-QARILALNASYFLKAGGHFVISI 248 (305)
Q Consensus 217 V~~d~~----~~~-~~~~l~~~a~~~LkpGG~lv~s~ 248 (305)
|++... .++ ..+++. ++++.|||||+|++..
T Consensus 219 v~~~~~lh~~~~~~~~~il~-~~~~~L~pgG~l~i~d 254 (306)
T TIGR02716 219 VLFCRILYSANEQLSTIMCK-KAFDAMRSGGRLLILD 254 (306)
T ss_pred EEeEhhhhcCChHHHHHHHH-HHHHhcCCCCEEEEEE
Confidence 875432 122 345666 9999999999999986
|
Members of this protein family are the S-adenosylmethionine-depenedent C-20 methyltransferase BchU, part of the pathway of bacteriochlorophyll c production in photosynthetic green sulfur bacteria. The position modified by this enzyme represents the difference between bacteriochlorophylls c and d; strains lacking this protein can only produced bacteriochlorophyll d. |
| >KOG1271 consensus Methyltransferases [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.20 E-value=1.6e-10 Score=96.63 Aligned_cols=127 Identities=24% Similarity=0.363 Sum_probs=87.5
Q ss_pred CEEEEEecCCCccHHHHHhhhCCCcEEEEEeCChHHHHHHHHHHHcC--CC-eEEEEccCCCCcccccCCCcEeEEEE--
Q 021911 145 ARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKR--TN-VIPIIEDARHPAKYRMLVGMVDVIFS-- 219 (305)
Q Consensus 145 ~~VLDlG~G~G~~t~~la~~~~~~~~V~avD~s~~~~~~l~~~a~~~--~n-I~~~~~D~~~~~~~~~~~~~fD~V~~-- 219 (305)
.+|||||||+|.+...|++. +-.+.+++||+|+.++.-+.+.|+.+ +| |.|.+.|++.+.. ...+||+|+-
T Consensus 69 ~~VlDLGtGNG~~L~~L~~e-gf~~~L~GvDYs~~AV~LA~niAe~~~~~n~I~f~q~DI~~~~~---~~~qfdlvlDKG 144 (227)
T KOG1271|consen 69 DRVLDLGTGNGHLLFQLAKE-GFQSKLTGVDYSEKAVELAQNIAERDGFSNEIRFQQLDITDPDF---LSGQFDLVLDKG 144 (227)
T ss_pred cceeeccCCchHHHHHHHHh-cCCCCccccccCHHHHHHHHHHHHhcCCCcceeEEEeeccCCcc---cccceeEEeecC
Confidence 49999999999999999987 34456999999997766655555554 45 9999999998743 3578888773
Q ss_pred --eCC--Chh----HHHHHHHHHhccCCCCcEEEEEEcccccCCCCchhhhHHHHHHHHHHCCCcEeEEeecCC
Q 021911 220 --DVA--QPD----QARILALNASYFLKAGGHFVISIKANCIDSTVPAEAVFQSEVKKLQQDQFKPFEQVTLEP 285 (305)
Q Consensus 220 --d~~--~~~----~~~~l~~~a~~~LkpGG~lv~s~~~~~i~~~~~~~~v~~~~~~~l~~~Gf~~~e~~~l~p 285 (305)
|+. +|+ ...+..-.+.++|+|+|.|+|.. |-+.. .+.++.+...+|+....+....
T Consensus 145 T~DAisLs~d~~~~r~~~Y~d~v~~ll~~~gifvItS---CN~T~-------dELv~~f~~~~f~~~~tvp~pt 208 (227)
T KOG1271|consen 145 TLDAISLSPDGPVGRLVVYLDSVEKLLSPGGIFVITS---CNFTK-------DELVEEFENFNFEYLSTVPTPT 208 (227)
T ss_pred ceeeeecCCCCcccceeeehhhHhhccCCCcEEEEEe---cCccH-------HHHHHHHhcCCeEEEEeeccce
Confidence 222 221 11222335678999999999986 42211 1224666777788777665443
|
|
| >PLN02781 Probable caffeoyl-CoA O-methyltransferase | Back alignment and domain information |
|---|
Probab=99.20 E-value=9.8e-11 Score=104.12 Aligned_cols=107 Identities=17% Similarity=0.181 Sum_probs=84.8
Q ss_pred CCCCCCEEEEEecCCCccHHHHHhhhCCCcEEEEEeCChHHHHHHHHHHHcC---CCeEEEEccCCCCccc-c--cCCCc
Q 021911 140 WIKPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKR---TNVIPIIEDARHPAKY-R--MLVGM 213 (305)
Q Consensus 140 ~~~~g~~VLDlG~G~G~~t~~la~~~~~~~~V~avD~s~~~~~~l~~~a~~~---~nI~~~~~D~~~~~~~-~--~~~~~ 213 (305)
...+..+|||+||++|..++.++..+.+.++|+++|+++.+++.+.++.++. .+|++++.|+.+..+. . ....+
T Consensus 65 ~~~~~~~vLEiGt~~G~s~l~la~~~~~~g~v~tiD~d~~~~~~A~~n~~~~gl~~~i~~~~gda~~~L~~l~~~~~~~~ 144 (234)
T PLN02781 65 KIMNAKNTLEIGVFTGYSLLTTALALPEDGRITAIDIDKEAYEVGLEFIKKAGVDHKINFIQSDALSALDQLLNNDPKPE 144 (234)
T ss_pred HHhCCCEEEEecCcccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHHhCCCCCC
Confidence 3456789999999999999999998877889999999997766666655544 5799999999765321 0 01358
Q ss_pred EeEEEEeCCChhHHHHHHHHHhccCCCCcEEEEE
Q 021911 214 VDVIFSDVAQPDQARILALNASYFLKAGGHFVIS 247 (305)
Q Consensus 214 fD~V~~d~~~~~~~~~l~~~a~~~LkpGG~lv~s 247 (305)
||+||+|...+.....+. .+.++|+|||.+++.
T Consensus 145 fD~VfiDa~k~~y~~~~~-~~~~ll~~GG~ii~d 177 (234)
T PLN02781 145 FDFAFVDADKPNYVHFHE-QLLKLVKVGGIIAFD 177 (234)
T ss_pred CCEEEECCCHHHHHHHHH-HHHHhcCCCeEEEEE
Confidence 999999998776667776 889999999998875
|
|
| >PRK03612 spermidine synthase; Provisional | Back alignment and domain information |
|---|
Probab=99.20 E-value=2.4e-10 Score=112.86 Aligned_cols=144 Identities=20% Similarity=0.195 Sum_probs=100.0
Q ss_pred CCCCEEEEEecCCCccHHHHHhhhCCCcEEEEEeCChHHHHHHHHHHHc-------------CCCeEEEEccCCCCcccc
Q 021911 142 KPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKK-------------RTNVIPIIEDARHPAKYR 208 (305)
Q Consensus 142 ~~g~~VLDlG~G~G~~t~~la~~~~~~~~V~avD~s~~~~~~l~~~a~~-------------~~nI~~~~~D~~~~~~~~ 208 (305)
++..+|||+|||+|..+..+++. .+..+|++||+++ ++++.+++ .+++++++.|+.+....
T Consensus 296 ~~~~rVL~IG~G~G~~~~~ll~~-~~v~~v~~VEid~----~vi~~ar~~~~l~~~~~~~~~dprv~vi~~Da~~~l~~- 369 (521)
T PRK03612 296 ARPRRVLVLGGGDGLALREVLKY-PDVEQVTLVDLDP----AMTELARTSPALRALNGGALDDPRVTVVNDDAFNWLRK- 369 (521)
T ss_pred CCCCeEEEEcCCccHHHHHHHhC-CCcCeEEEEECCH----HHHHHHHhCCcchhhhccccCCCceEEEEChHHHHHHh-
Confidence 34579999999999999999875 2226999999999 45555444 15799999999765332
Q ss_pred cCCCcEeEEEEeCCChh--------HHHHHHHHHhccCCCCcEEEEEEcccccCCCCchhhhHHHHHHHHHHCCCcEeEE
Q 021911 209 MLVGMVDVIFSDVAQPD--------QARILALNASYFLKAGGHFVISIKANCIDSTVPAEAVFQSEVKKLQQDQFKPFEQ 280 (305)
Q Consensus 209 ~~~~~fD~V~~d~~~~~--------~~~~l~~~a~~~LkpGG~lv~s~~~~~i~~~~~~~~v~~~~~~~l~~~Gf~~~e~ 280 (305)
..++||+|++|.+.+. ..+.+. ++.+.|||+|.+++.. .+. ......+.+..+.+++.||.+...
T Consensus 370 -~~~~fDvIi~D~~~~~~~~~~~L~t~ef~~-~~~~~L~pgG~lv~~~--~~~---~~~~~~~~~i~~~l~~~gf~v~~~ 442 (521)
T PRK03612 370 -LAEKFDVIIVDLPDPSNPALGKLYSVEFYR-LLKRRLAPDGLLVVQS--TSP---YFAPKAFWSIEATLEAAGLATTPY 442 (521)
T ss_pred -CCCCCCEEEEeCCCCCCcchhccchHHHHH-HHHHhcCCCeEEEEec--CCc---ccchHHHHHHHHHHHHcCCEEEEE
Confidence 2468999999988543 123455 8899999999999875 221 112334566678888899955444
Q ss_pred eecCCCCCceEEEEEEEc
Q 021911 281 VTLEPFERDHACVVGGYR 298 (305)
Q Consensus 281 ~~l~p~~~~~~~vv~~~~ 298 (305)
....|.-..+.++++.+.
T Consensus 443 ~~~vps~g~w~f~~as~~ 460 (521)
T PRK03612 443 HVNVPSFGEWGFVLAGAG 460 (521)
T ss_pred EeCCCCcchhHHHeeeCC
Confidence 433343356667777554
|
|
| >PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.20 E-value=2e-10 Score=117.15 Aligned_cols=124 Identities=20% Similarity=0.104 Sum_probs=90.5
Q ss_pred CCCEEEEEecCCCccHHHHHhhhCCCcEEEEEeCChHHHHHHHHHHHcC----CCeEEEEccCCCCcccccCCCcEeEEE
Q 021911 143 PGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKR----TNVIPIIEDARHPAKYRMLVGMVDVIF 218 (305)
Q Consensus 143 ~g~~VLDlG~G~G~~t~~la~~~~~~~~V~avD~s~~~~~~l~~~a~~~----~nI~~~~~D~~~~~~~~~~~~~fD~V~ 218 (305)
++.+|||+|||+|.++++++.. ...+|++||+|+.++..+.++++.+ .++++++.|+.++... ...+||+|+
T Consensus 538 ~g~rVLDlf~gtG~~sl~aa~~--Ga~~V~~vD~s~~al~~a~~N~~~ng~~~~~v~~i~~D~~~~l~~--~~~~fDlIi 613 (702)
T PRK11783 538 KGKDFLNLFAYTGTASVHAALG--GAKSTTTVDMSNTYLEWAERNFALNGLSGRQHRLIQADCLAWLKE--AREQFDLIF 613 (702)
T ss_pred CCCeEEEcCCCCCHHHHHHHHC--CCCEEEEEeCCHHHHHHHHHHHHHhCCCccceEEEEccHHHHHHH--cCCCcCEEE
Confidence 5789999999999999999986 3457999999997777776666654 3689999998765321 246899999
Q ss_pred EeCCCh--------------hHHHHHHHHHhccCCCCcEEEEEEcccccCCCCchhhhHHHHHHHHHHCCCcEeEEe
Q 021911 219 SDVAQP--------------DQARILALNASYFLKAGGHFVISIKANCIDSTVPAEAVFQSEVKKLQQDQFKPFEQV 281 (305)
Q Consensus 219 ~d~~~~--------------~~~~~l~~~a~~~LkpGG~lv~s~~~~~i~~~~~~~~v~~~~~~~l~~~Gf~~~e~~ 281 (305)
+|+|.- +...++. .+.++|+|||.|++++ |...- ....+.+.+.|+++..+.
T Consensus 614 lDPP~f~~~~~~~~~~~~~~~y~~l~~-~a~~lL~~gG~l~~~~---~~~~~-------~~~~~~~~~~g~~~~~i~ 679 (702)
T PRK11783 614 IDPPTFSNSKRMEDSFDVQRDHVALIK-DAKRLLRPGGTLYFSN---NKRGF-------KMDEEGLAKLGLKAEEIT 679 (702)
T ss_pred ECCCCCCCCCccchhhhHHHHHHHHHH-HHHHHcCCCCEEEEEe---CCccC-------ChhHHHHHhCCCeEEEEe
Confidence 999931 2344555 7889999999999886 32111 112455667788776543
|
|
| >KOG4589 consensus Cell division protein FtsJ [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.20 E-value=5.3e-10 Score=93.77 Aligned_cols=159 Identities=28% Similarity=0.358 Sum_probs=103.1
Q ss_pred hhhHHHHHHHcccccc-CCCCCCEEEEEecCCCccHHHHHhhhCCCcEEEEEeCChHHHHHHHHHHHcCCCeEEEEc-cC
Q 021911 124 FRSKLAAAVLGGVDNI-WIKPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKRTNVIPIIE-DA 201 (305)
Q Consensus 124 ~~s~l~a~ll~~l~~~-~~~~g~~VLDlG~G~G~~t~~la~~~~~~~~V~avD~s~~~~~~l~~~a~~~~nI~~~~~-D~ 201 (305)
|++..+-.+++.=++. .++|+++|||+||+||.++..+-+.++|.+.|.+||+-+ ..--+.+.+++. |+
T Consensus 49 yR~RsAFKLiEindKy~~l~p~~~VlD~G~APGsWsQVavqr~~p~g~v~gVDllh---------~~p~~Ga~~i~~~dv 119 (232)
T KOG4589|consen 49 YRSRSAFKLIEINDKYRFLRPEDTVLDCGAAPGSWSQVAVQRVNPNGMVLGVDLLH---------IEPPEGATIIQGNDV 119 (232)
T ss_pred hhhhhhhhheeehhhccccCCCCEEEEccCCCChHHHHHHHhhCCCceEEEEeeee---------ccCCCCccccccccc
Confidence 4666666666533322 568899999999999999999999999999999999976 111245666666 88
Q ss_pred CCCcccc-----cCCCcEeEEEEeCCC-------hhHHHHHHHH------HhccCCCCcEEEEEEcccccCCCCchhhhH
Q 021911 202 RHPAKYR-----MLVGMVDVIFSDVAQ-------PDQARILALN------ASYFLKAGGHFVISIKANCIDSTVPAEAVF 263 (305)
Q Consensus 202 ~~~~~~~-----~~~~~fD~V~~d~~~-------~~~~~~l~~~------a~~~LkpGG~lv~s~~~~~i~~~~~~~~v~ 263 (305)
+++..+. .+...+|+|++||+. .|+.+++.++ +..+|+|+|.|++-++... +...|
T Consensus 120 tdp~~~~ki~e~lp~r~VdvVlSDMapnaTGvr~~Dh~~~i~LC~s~l~~al~~~~p~g~fvcK~w~g~------e~~~l 193 (232)
T KOG4589|consen 120 TDPETYRKIFEALPNRPVDVVLSDMAPNATGVRIRDHYRSIELCDSALLFALTLLIPNGSFVCKLWDGS------EEALL 193 (232)
T ss_pred CCHHHHHHHHHhCCCCcccEEEeccCCCCcCcchhhHHHHHHHHHHHHHHhhhhcCCCcEEEEEEecCC------chHHH
Confidence 8875432 234589999999982 3555544433 6678999999999874322 33344
Q ss_pred HHHHHHHHHCCCcEeEEeec--CCCCCceEEEEEEEcCCC
Q 021911 264 QSEVKKLQQDQFKPFEQVTL--EPFERDHACVVGGYRMPK 301 (305)
Q Consensus 264 ~~~~~~l~~~Gf~~~e~~~l--~p~~~~~~~vv~~~~~~~ 301 (305)
..++.. . |+.+..+.- .--|.....+++...+..
T Consensus 194 ~r~l~~---~-f~~Vk~vKP~Asr~eS~E~y~v~~~~k~~ 229 (232)
T KOG4589|consen 194 QRRLQA---V-FTNVKKVKPDASRDESAETYLVCLNFKGN 229 (232)
T ss_pred HHHHHH---H-hhhcEeeCCccccccccceeeeeeeccCc
Confidence 444332 2 444443321 123344455666655543
|
|
| >COG2521 Predicted archaeal methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.19 E-value=1.2e-10 Score=100.84 Aligned_cols=133 Identities=20% Similarity=0.155 Sum_probs=96.0
Q ss_pred CCCCCCEEEEEecCCCccHHHHHhhhCCCcEEEEEeCChHHHHHHHHHHHcC--------CCeEEEEccCCCCcccccCC
Q 021911 140 WIKPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKR--------TNVIPIIEDARHPAKYRMLV 211 (305)
Q Consensus 140 ~~~~g~~VLDlG~G~G~~t~~la~~~~~~~~V~avD~s~~~~~~l~~~a~~~--------~nI~~~~~D~~~~~~~~~~~ 211 (305)
.++.+.+|||.|.|-|++++..++. ....|+.||.++ +.++.|+.+ .+|+++..|+.+..+. +.+
T Consensus 131 ~~~~G~rVLDtC~GLGYtAi~a~~r--GA~~VitvEkdp----~VLeLa~lNPwSr~l~~~~i~iilGD~~e~V~~-~~D 203 (287)
T COG2521 131 KVKRGERVLDTCTGLGYTAIEALER--GAIHVITVEKDP----NVLELAKLNPWSRELFEIAIKIILGDAYEVVKD-FDD 203 (287)
T ss_pred ccccCCEeeeeccCccHHHHHHHHc--CCcEEEEEeeCC----CeEEeeccCCCCccccccccEEecccHHHHHhc-CCc
Confidence 4667999999999999999998887 455899999999 677777655 3688999998665432 346
Q ss_pred CcEeEEEEeCCC-----hhHHHHHHHHHhccCCCCcEEEEEEcccccCCCCchhhhHHHHHHHHHHCCCcEeEEe
Q 021911 212 GMVDVIFSDVAQ-----PDQARILALNASYFLKAGGHFVISIKANCIDSTVPAEAVFQSEVKKLQQDQFKPFEQV 281 (305)
Q Consensus 212 ~~fD~V~~d~~~-----~~~~~~l~~~a~~~LkpGG~lv~s~~~~~i~~~~~~~~v~~~~~~~l~~~Gf~~~e~~ 281 (305)
.+||+|+.|+|- ....+-|..+.+++|||||.|+-.+-+.- ...--..+.....+.|++.||+.++.+
T Consensus 204 ~sfDaIiHDPPRfS~AgeLYseefY~El~RiLkrgGrlFHYvG~Pg--~ryrG~d~~~gVa~RLr~vGF~~v~~~ 276 (287)
T COG2521 204 ESFDAIIHDPPRFSLAGELYSEEFYRELYRILKRGGRLFHYVGNPG--KRYRGLDLPKGVAERLRRVGFEVVKKV 276 (287)
T ss_pred cccceEeeCCCccchhhhHhHHHHHHHHHHHcCcCCcEEEEeCCCC--cccccCChhHHHHHHHHhcCceeeeee
Confidence 789999999992 23444444589999999999988762111 000111233344678899999977654
|
|
| >PF10672 Methyltrans_SAM: S-adenosylmethionine-dependent methyltransferase; InterPro: IPR019614 Members of this entry are S-adenosylmethionine-dependent methyltransferases from gamma-proteobacterial species | Back alignment and domain information |
|---|
Probab=99.19 E-value=2e-10 Score=104.39 Aligned_cols=134 Identities=21% Similarity=0.133 Sum_probs=87.2
Q ss_pred CCCEEEEEecCCCccHHHHHhhhCCCcEEEEEeCChHHHHHHHHHHHcC----CCeEEEEccCCCCcccccCCCcEeEEE
Q 021911 143 PGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKR----TNVIPIIEDARHPAKYRMLVGMVDVIF 218 (305)
Q Consensus 143 ~g~~VLDlG~G~G~~t~~la~~~~~~~~V~avD~s~~~~~~l~~~a~~~----~nI~~~~~D~~~~~~~~~~~~~fD~V~ 218 (305)
.+.+|||++|=+|.++.+++.. ...+|+.||.|..++....++++.+ .++++++.|+.+.........+||+||
T Consensus 123 ~gkrvLnlFsYTGgfsv~Aa~g--GA~~v~~VD~S~~al~~a~~N~~lNg~~~~~~~~~~~Dvf~~l~~~~~~~~fD~II 200 (286)
T PF10672_consen 123 KGKRVLNLFSYTGGFSVAAAAG--GAKEVVSVDSSKRALEWAKENAALNGLDLDRHRFIQGDVFKFLKRLKKGGRFDLII 200 (286)
T ss_dssp TTCEEEEET-TTTHHHHHHHHT--TESEEEEEES-HHHHHHHHHHHHHTT-CCTCEEEEES-HHHHHHHHHHTT-EEEEE
T ss_pred CCCceEEecCCCCHHHHHHHHC--CCCEEEEEeCCHHHHHHHHHHHHHcCCCccceEEEecCHHHHHHHHhcCCCCCEEE
Confidence 4789999999999999998754 4558999999998877777777655 478999999876433211236999999
Q ss_pred EeCCC---------hhHHHHHHHHHhccCCCCcEEEEEEcccccCCCCchhhhHHHHHHHHHHCCCcEeEEeecCC
Q 021911 219 SDVAQ---------PDQARILALNASYFLKAGGHFVISIKANCIDSTVPAEAVFQSEVKKLQQDQFKPFEQVTLEP 285 (305)
Q Consensus 219 ~d~~~---------~~~~~~l~~~a~~~LkpGG~lv~s~~~~~i~~~~~~~~v~~~~~~~l~~~Gf~~~e~~~l~p 285 (305)
+|||. .+..+++. .+.++|+|||.|+.++ |+...+ ...|.+.+.... ..+++++.+...|
T Consensus 201 lDPPsF~k~~~~~~~~y~~L~~-~a~~ll~~gG~l~~~s--cs~~i~---~~~l~~~~~~~a-~~~~~~~~~~~p~ 269 (286)
T PF10672_consen 201 LDPPSFAKSKFDLERDYKKLLR-RAMKLLKPGGLLLTCS--CSHHIS---PDFLLEAVAEAA-REVEFIERLGQPP 269 (286)
T ss_dssp E--SSEESSTCEHHHHHHHHHH-HHHHTEEEEEEEEEEE----TTS----HHHHHHHHHHHH-HHCEEEEEEE---
T ss_pred ECCCCCCCCHHHHHHHHHHHHH-HHHHhcCCCCEEEEEc--CCcccC---HHHHHHHHHHhC-ccceEeeeecccc
Confidence 99992 34555665 8999999999999887 432221 223333333332 3477777776544
|
The diversity in the roles of methylation is matched by the almost bewildering number of methyltransferase enzymes that catalyse the methylation reaction. Although several classes of methyltransferase enzymes are known, the great majority of methylation reactions are catalysed by the S-adenosylmethionine-dependent methyltransferases. SAM (S-adenosylmethionine, also known as AdoMet) is well known as the methyl donor for the majority of methyltransferases that modify DNA, RNA, histones and other proteins, dictating replicational, transcriptional and translational fidelity, mismatch repair, chromatin modelling, epigenetic modifications and imprinting [].; GO: 0008168 methyltransferase activity; PDB: 2IGT_B 1WXX_A 1WXW_D 2CWW_B 2AS0_B 3V8V_B 3V97_A 3C0K_A 2B78_A 3LDF_A. |
| >PRK06922 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.18 E-value=1.8e-10 Score=114.07 Aligned_cols=105 Identities=19% Similarity=0.208 Sum_probs=79.0
Q ss_pred CCCCCEEEEEecCCCccHHHHHhhhCCCcEEEEEeCChHHHHHHHHHHHcC-CCeEEEEccCCCCcccccCCCcEeEEEE
Q 021911 141 IKPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKR-TNVIPIIEDARHPAKYRMLVGMVDVIFS 219 (305)
Q Consensus 141 ~~~g~~VLDlG~G~G~~t~~la~~~~~~~~V~avD~s~~~~~~l~~~a~~~-~nI~~~~~D~~~~~~~~~~~~~fD~V~~ 219 (305)
..++.+|||+|||+|..+..++..+ +..+|+++|+|+.+++.+.+.+... .++.+++.|+.+.+.. +.+++||+|++
T Consensus 416 ~~~g~rVLDIGCGTG~ls~~LA~~~-P~~kVtGIDIS~~MLe~Ararl~~~g~~ie~I~gDa~dLp~~-fedeSFDvVVs 493 (677)
T PRK06922 416 YIKGDTIVDVGAGGGVMLDMIEEET-EDKRIYGIDISENVIDTLKKKKQNEGRSWNVIKGDAINLSSS-FEKESVDTIVY 493 (677)
T ss_pred hcCCCEEEEeCCCCCHHHHHHHHhC-CCCEEEEEECCHHHHHHHHHHhhhcCCCeEEEEcchHhCccc-cCCCCEEEEEE
Confidence 4467899999999999999999875 6789999999995555544433222 4678888998765421 23578999998
Q ss_pred eCCC----------------hhHHHHHHHHHhccCCCCcEEEEEE
Q 021911 220 DVAQ----------------PDQARILALNASYFLKAGGHFVISI 248 (305)
Q Consensus 220 d~~~----------------~~~~~~l~~~a~~~LkpGG~lv~s~ 248 (305)
+.+. .+..+++. ++.++|||||.+++..
T Consensus 494 n~vLH~L~syIp~~g~~f~~edl~kiLr-eI~RVLKPGGrLII~D 537 (677)
T PRK06922 494 SSILHELFSYIEYEGKKFNHEVIKKGLQ-SAYEVLKPGGRIIIRD 537 (677)
T ss_pred chHHHhhhhhcccccccccHHHHHHHHH-HHHHHcCCCcEEEEEe
Confidence 6531 23456666 9999999999999986
|
|
| >PF08242 Methyltransf_12: Methyltransferase domain; InterPro: IPR013217 Methyl transfer from the ubiquitous donor S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals | Back alignment and domain information |
|---|
Probab=99.18 E-value=2e-11 Score=93.58 Aligned_cols=90 Identities=21% Similarity=0.314 Sum_probs=54.2
Q ss_pred EEEecCCCccHHHHHhhhCCCcEEEEEeCChHHHHHHHHHHHcC------CCeEEEEccCCCCcccccCCCcEeEEEEeC
Q 021911 148 LYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKR------TNVIPIIEDARHPAKYRMLVGMVDVIFSDV 221 (305)
Q Consensus 148 LDlG~G~G~~t~~la~~~~~~~~V~avD~s~~~~~~l~~~a~~~------~nI~~~~~D~~~~~~~~~~~~~fD~V~~d~ 221 (305)
||+|||+|.++..+++.+ +..+++++|+|+ .+++.++++ .++..+..+..+..... ...+||+|++..
T Consensus 1 LdiGcG~G~~~~~l~~~~-~~~~~~~~D~s~----~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~fD~V~~~~ 74 (99)
T PF08242_consen 1 LDIGCGTGRLLRALLEEL-PDARYTGVDISP----SMLERARERLAELGNDNFERLRFDVLDLFDYD-PPESFDLVVASN 74 (99)
T ss_dssp -EESTTTS-TTTTHHHHC--EEEEEEEESSS----STTSTTCCCHHHCT---EEEEE--SSS---CC-C----SEEEEE-
T ss_pred CEeCccChHHHHHHHHhC-CCCEEEEEECCH----HHHHHHHHHhhhcCCcceeEEEeecCChhhcc-cccccceehhhh
Confidence 799999999999999987 678999999999 555444444 23444444443332221 125999999865
Q ss_pred C---ChhHHHHHHHHHhccCCCCcEE
Q 021911 222 A---QPDQARILALNASYFLKAGGHF 244 (305)
Q Consensus 222 ~---~~~~~~~l~~~a~~~LkpGG~l 244 (305)
. .++....+. ++.++|||||+|
T Consensus 75 vl~~l~~~~~~l~-~~~~~L~pgG~l 99 (99)
T PF08242_consen 75 VLHHLEDIEAVLR-NIYRLLKPGGIL 99 (99)
T ss_dssp TTS--S-HHHHHH-HHTTT-TSS-EE
T ss_pred hHhhhhhHHHHHH-HHHHHcCCCCCC
Confidence 5 346667776 999999999986
|
The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] Fatty acid synthase (2.3.1.85 from EC), a biosynthetic enzyme catalysing the formation of long-chain fatty acids Glycine N-methyltransferase (2.1.1.20 from EC) which catalyses the SAM-dependent methylation of glycine to form sarcosine and may play a role in regulating the methylation potential of the cell [] Enniatin synthetase, involved in non-ribosomal biosynthesis of cyclohexadepsipeptidase, enniatin [] Histamine N-methyltransferase (2.1.1.8 from EC), a SAM-dependent histamine-inactivating enzyme [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ].; PDB: 2VZ8_A 2VZ9_A. |
| >PRK00811 spermidine synthase; Provisional | Back alignment and domain information |
|---|
Probab=99.17 E-value=2.9e-09 Score=97.37 Aligned_cols=145 Identities=19% Similarity=0.155 Sum_probs=97.0
Q ss_pred CCCEEEEEecCCCccHHHHHhhhCCCcEEEEEeCChHHHHHHHHHHH-------cCCCeEEEEccCCCCcccccCCCcEe
Q 021911 143 PGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAK-------KRTNVIPIIEDARHPAKYRMLVGMVD 215 (305)
Q Consensus 143 ~g~~VLDlG~G~G~~t~~la~~~~~~~~V~avD~s~~~~~~l~~~a~-------~~~nI~~~~~D~~~~~~~~~~~~~fD 215 (305)
...+||+||||.|.++..+++.. +..+|++||+++..++.+.+... ..+++++++.|+...... ...+||
T Consensus 76 ~p~~VL~iG~G~G~~~~~~l~~~-~~~~V~~VEid~~vv~~a~~~~~~~~~~~~~d~rv~v~~~Da~~~l~~--~~~~yD 152 (283)
T PRK00811 76 NPKRVLIIGGGDGGTLREVLKHP-SVEKITLVEIDERVVEVCRKYLPEIAGGAYDDPRVELVIGDGIKFVAE--TENSFD 152 (283)
T ss_pred CCCEEEEEecCchHHHHHHHcCC-CCCEEEEEeCCHHHHHHHHHHhHHhccccccCCceEEEECchHHHHhh--CCCccc
Confidence 35799999999999999998763 34589999999966555444332 136799999998765432 246899
Q ss_pred EEEEeCCChh-------HHHHHHHHHhccCCCCcEEEEEEcccccCCCCchhhhHHHHHHHHHHCCCcEeEEe--ecCCC
Q 021911 216 VIFSDVAQPD-------QARILALNASYFLKAGGHFVISIKANCIDSTVPAEAVFQSEVKKLQQDQFKPFEQV--TLEPF 286 (305)
Q Consensus 216 ~V~~d~~~~~-------~~~~l~~~a~~~LkpGG~lv~s~~~~~i~~~~~~~~v~~~~~~~l~~~Gf~~~e~~--~l~p~ 286 (305)
+|++|.+.|. ..+.+. .+.+.|+|+|.|++... +... . ...+....+.|++. |...... .+..|
T Consensus 153 vIi~D~~dp~~~~~~l~t~ef~~-~~~~~L~~gGvlv~~~~--~~~~--~-~~~~~~i~~tl~~~-F~~v~~~~~~vp~~ 225 (283)
T PRK00811 153 VIIVDSTDPVGPAEGLFTKEFYE-NCKRALKEDGIFVAQSG--SPFY--Q-ADEIKDMHRKLKEV-FPIVRPYQAAIPTY 225 (283)
T ss_pred EEEECCCCCCCchhhhhHHHHHH-HHHHhcCCCcEEEEeCC--Cccc--C-HHHHHHHHHHHHHH-CCCEEEEEeECCcc
Confidence 9999876331 244455 88999999999988642 2111 1 23455566777666 6554433 33445
Q ss_pred C-CceEEEEEEE
Q 021911 287 E-RDHACVVGGY 297 (305)
Q Consensus 287 ~-~~~~~vv~~~ 297 (305)
. ..+.+++|.+
T Consensus 226 ~~~~w~f~~as~ 237 (283)
T PRK00811 226 PSGLWSFTFASK 237 (283)
T ss_pred cCchheeEEeec
Confidence 2 3456677776
|
|
| >smart00138 MeTrc Methyltransferase, chemotaxis proteins | Back alignment and domain information |
|---|
Probab=99.16 E-value=1.5e-10 Score=104.82 Aligned_cols=99 Identities=17% Similarity=0.259 Sum_probs=73.7
Q ss_pred CCCCEEEEEecCCCc----cHHHHHhhhCC----CcEEEEEeCChHHHHHHHHHHHcC----------------------
Q 021911 142 KPGARVLYLGAASGT----TVSHVSDIVGP----NGVVYAVEFSHRSGRDLVNMAKKR---------------------- 191 (305)
Q Consensus 142 ~~g~~VLDlG~G~G~----~t~~la~~~~~----~~~V~avD~s~~~~~~l~~~a~~~---------------------- 191 (305)
.+..+|||+|||+|. ++..+++.... ..+|+|+|+|+. +++.|++.
T Consensus 98 ~~~~ri~d~GCgtGee~YslA~~l~e~~~~~~~~~~~I~g~Dis~~----~L~~Ar~~~y~~~~~~~~~~~~~~~yf~~~ 173 (264)
T smart00138 98 GRRVRIWSAGCSTGEEPYSLAMLLAETLPKAREPDVKILATDIDLK----ALEKARAGIYPERELEDLPKALLARYFSRV 173 (264)
T ss_pred CCCEEEEeccccCChHHHHHHHHHHHHhhhcCCCCeEEEEEECCHH----HHHHHHcCCCCHHHHhcCCHHHHhhhEEeC
Confidence 345799999999996 45555555432 468999999994 44444431
Q ss_pred -----------CCeEEEEccCCCCcccccCCCcEeEEEEeCC-----ChhHHHHHHHHHhccCCCCcEEEEEE
Q 021911 192 -----------TNVIPIIEDARHPAKYRMLVGMVDVIFSDVA-----QPDQARILALNASYFLKAGGHFVISI 248 (305)
Q Consensus 192 -----------~nI~~~~~D~~~~~~~~~~~~~fD~V~~d~~-----~~~~~~~l~~~a~~~LkpGG~lv~s~ 248 (305)
.+|.+.+.|+.+.+. ..++||+|+|... .+++.+++. ++++.|||||+|++..
T Consensus 174 ~~~~~v~~~ir~~V~F~~~dl~~~~~---~~~~fD~I~crnvl~yf~~~~~~~~l~-~l~~~L~pGG~L~lg~ 242 (264)
T smart00138 174 EDKYRVKPELKERVRFAKHNLLAESP---PLGDFDLIFCRNVLIYFDEPTQRKLLN-RFAEALKPGGYLFLGH 242 (264)
T ss_pred CCeEEEChHHhCcCEEeeccCCCCCC---ccCCCCEEEechhHHhCCHHHHHHHHH-HHHHHhCCCeEEEEEC
Confidence 368899999987643 2478999999543 356667887 9999999999999975
|
Methylates methyl-accepting chemotaxis proteins to form gamma-glutamyl methyl ester residues. |
| >KOG1270 consensus Methyltransferases [Coenzyme transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.15 E-value=6.6e-11 Score=104.31 Aligned_cols=97 Identities=18% Similarity=0.179 Sum_probs=70.3
Q ss_pred CCEEEEEecCCCccHHHHHhhhCCCcEEEEEeCChHHHHHHHHHHHcC----CC----eEEEEccCCCCcccccCCCcEe
Q 021911 144 GARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKR----TN----VIPIIEDARHPAKYRMLVGMVD 215 (305)
Q Consensus 144 g~~VLDlG~G~G~~t~~la~~~~~~~~V~avD~s~~~~~~l~~~a~~~----~n----I~~~~~D~~~~~~~~~~~~~fD 215 (305)
+++|||+|||.|.++.+||+.- .+|+++|+++.+++.+.+.++.. .+ +++.+.|+... .+.||
T Consensus 90 g~~ilDvGCGgGLLSepLArlg---a~V~GID~s~~~V~vA~~h~~~dP~~~~~~~y~l~~~~~~~E~~------~~~fD 160 (282)
T KOG1270|consen 90 GMKILDVGCGGGLLSEPLARLG---AQVTGIDASDDMVEVANEHKKMDPVLEGAIAYRLEYEDTDVEGL------TGKFD 160 (282)
T ss_pred CceEEEeccCccccchhhHhhC---CeeEeecccHHHHHHHHHhhhcCchhccccceeeehhhcchhhc------ccccc
Confidence 5889999999999999999982 59999999994443333332222 22 34444455443 35699
Q ss_pred EEEEeCC---ChhHHHHHHHHHhccCCCCcEEEEEEcc
Q 021911 216 VIFSDVA---QPDQARILALNASYFLKAGGHFVISIKA 250 (305)
Q Consensus 216 ~V~~d~~---~~~~~~~l~~~a~~~LkpGG~lv~s~~~ 250 (305)
+|+|... ..+..+++. .+.++|||+|.|+++|-.
T Consensus 161 aVvcsevleHV~dp~~~l~-~l~~~lkP~G~lfittin 197 (282)
T KOG1270|consen 161 AVVCSEVLEHVKDPQEFLN-CLSALLKPNGRLFITTIN 197 (282)
T ss_pred eeeeHHHHHHHhCHHHHHH-HHHHHhCCCCceEeeehh
Confidence 9999666 345666666 899999999999999843
|
|
| >PRK05031 tRNA (uracil-5-)-methyltransferase; Validated | Back alignment and domain information |
|---|
Probab=99.15 E-value=4.5e-10 Score=106.14 Aligned_cols=129 Identities=18% Similarity=0.070 Sum_probs=90.7
Q ss_pred CEEEEEecCCCccHHHHHhhhCCCcEEEEEeCChHHHHHHHHHHHcC--CCeEEEEccCCCCccccc-------------
Q 021911 145 ARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKR--TNVIPIIEDARHPAKYRM------------- 209 (305)
Q Consensus 145 ~~VLDlG~G~G~~t~~la~~~~~~~~V~avD~s~~~~~~l~~~a~~~--~nI~~~~~D~~~~~~~~~------------- 209 (305)
.+|||++||+|+++..+++.. ..|++||+|+.+++.+.++++.+ .|+.++..|+.+......
T Consensus 208 ~~vLDl~~G~G~~sl~la~~~---~~v~~vE~~~~ai~~a~~N~~~~~~~~v~~~~~d~~~~l~~~~~~~~~~~~~~~~~ 284 (362)
T PRK05031 208 GDLLELYCGNGNFTLALARNF---RRVLATEISKPSVAAAQYNIAANGIDNVQIIRMSAEEFTQAMNGVREFNRLKGIDL 284 (362)
T ss_pred CeEEEEeccccHHHHHHHhhC---CEEEEEECCHHHHHHHHHHHHHhCCCcEEEEECCHHHHHHHHhhcccccccccccc
Confidence 579999999999999999874 38999999998887777776655 589999999866432100
Q ss_pred CCCcEeEEEEeCCChhH-HHHHHHHHhccCCCCcEEEEEEcccccCCCCchhhhHHHHHHHHHHCCCcEeEEeecCCCCC
Q 021911 210 LVGMVDVIFSDVAQPDQ-ARILALNASYFLKAGGHFVISIKANCIDSTVPAEAVFQSEVKKLQQDQFKPFEQVTLEPFER 288 (305)
Q Consensus 210 ~~~~fD~V~~d~~~~~~-~~~l~~~a~~~LkpGG~lv~s~~~~~i~~~~~~~~v~~~~~~~l~~~Gf~~~e~~~l~p~~~ 288 (305)
....||+||+|+|-... ..++. .+ ++|...+++|. ++ ..++..+..|.+ ||++.+...++.|..
T Consensus 285 ~~~~~D~v~lDPPR~G~~~~~l~-~l---~~~~~ivyvSC---------~p-~tlarDl~~L~~-gY~l~~v~~~DmFPq 349 (362)
T PRK05031 285 KSYNFSTIFVDPPRAGLDDETLK-LV---QAYERILYISC---------NP-ETLCENLETLSQ-THKVERFALFDQFPY 349 (362)
T ss_pred cCCCCCEEEECCCCCCCcHHHHH-HH---HccCCEEEEEe---------CH-HHHHHHHHHHcC-CcEEEEEEEcccCCC
Confidence 01258999999995432 22222 22 23666666663 23 335666777764 899999888887776
Q ss_pred ceE
Q 021911 289 DHA 291 (305)
Q Consensus 289 ~~~ 291 (305)
.+.
T Consensus 350 T~H 352 (362)
T PRK05031 350 THH 352 (362)
T ss_pred CCc
Confidence 443
|
|
| >PRK10909 rsmD 16S rRNA m(2)G966-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.15 E-value=4.6e-10 Score=97.27 Aligned_cols=121 Identities=12% Similarity=0.004 Sum_probs=81.3
Q ss_pred CchhhHHHHHHHccccccCCCCCCEEEEEecCCCccHHHHHhhhCCCcEEEEEeCChHHHHHHHHHHHcC--CCeEEEEc
Q 021911 122 NPFRSKLAAAVLGGVDNIWIKPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKR--TNVIPIIE 199 (305)
Q Consensus 122 ~~~~s~l~a~ll~~l~~~~~~~g~~VLDlG~G~G~~t~~la~~~~~~~~V~avD~s~~~~~~l~~~a~~~--~nI~~~~~ 199 (305)
.|....+...++..+. ...++.+|||+|||+|.++..++... ..+|++||+++.+++.+.++++.. .++.+++.
T Consensus 34 Rp~~d~v~e~l~~~l~--~~~~~~~vLDl~~GsG~l~l~~lsr~--a~~V~~vE~~~~a~~~a~~Nl~~~~~~~v~~~~~ 109 (199)
T PRK10909 34 RPTTDRVRETLFNWLA--PVIVDARCLDCFAGSGALGLEALSRY--AAGATLLEMDRAVAQQLIKNLATLKAGNARVVNT 109 (199)
T ss_pred CcCCHHHHHHHHHHHh--hhcCCCEEEEcCCCccHHHHHHHHcC--CCEEEEEECCHHHHHHHHHHHHHhCCCcEEEEEc
Confidence 3445666555554443 22457899999999999998655442 358999999997777666665543 57999999
Q ss_pred cCCCCcccccCCCcEeEEEEeCCC-hhHHHHHHHHH--hccCCCCcEEEEEE
Q 021911 200 DARHPAKYRMLVGMVDVIFSDVAQ-PDQARILALNA--SYFLKAGGHFVISI 248 (305)
Q Consensus 200 D~~~~~~~~~~~~~fD~V~~d~~~-~~~~~~l~~~a--~~~LkpGG~lv~s~ 248 (305)
|+...... ...+||+|++|+|. ......+...+ ..+|+|++.+++++
T Consensus 110 D~~~~l~~--~~~~fDlV~~DPPy~~g~~~~~l~~l~~~~~l~~~~iv~ve~ 159 (199)
T PRK10909 110 NALSFLAQ--PGTPHNVVFVDPPFRKGLLEETINLLEDNGWLADEALIYVES 159 (199)
T ss_pred hHHHHHhh--cCCCceEEEECCCCCCChHHHHHHHHHHCCCcCCCcEEEEEe
Confidence 98654321 23479999999992 22222221122 34589999888886
|
|
| >PRK05134 bifunctional 3-demethylubiquinone-9 3-methyltransferase/ 2-octaprenyl-6-hydroxy phenol methylase; Provisional | Back alignment and domain information |
|---|
Probab=99.14 E-value=1.6e-09 Score=96.02 Aligned_cols=104 Identities=20% Similarity=0.145 Sum_probs=76.2
Q ss_pred CCCCCCEEEEEecCCCccHHHHHhhhCCCcEEEEEeCChHHHHHHHHHHHcC-CCeEEEEccCCCCcccccCCCcEeEEE
Q 021911 140 WIKPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKR-TNVIPIIEDARHPAKYRMLVGMVDVIF 218 (305)
Q Consensus 140 ~~~~g~~VLDlG~G~G~~t~~la~~~~~~~~V~avD~s~~~~~~l~~~a~~~-~nI~~~~~D~~~~~~~~~~~~~fD~V~ 218 (305)
...++.+|||+|||+|.++..+++. ..+|+++|+++..+..+.+..... .++.++..|+...... ...+||+|+
T Consensus 45 ~~~~~~~vLdiG~G~G~~~~~l~~~---~~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~--~~~~fD~Ii 119 (233)
T PRK05134 45 GGLFGKRVLDVGCGGGILSESMARL---GADVTGIDASEENIEVARLHALESGLKIDYRQTTAEELAAE--HPGQFDVVT 119 (233)
T ss_pred cCCCCCeEEEeCCCCCHHHHHHHHc---CCeEEEEcCCHHHHHHHHHHHHHcCCceEEEecCHHHhhhh--cCCCccEEE
Confidence 3557889999999999999988876 247999999995544444333322 3577777777655322 246899999
Q ss_pred EeCC---ChhHHHHHHHHHhccCCCCcEEEEEEc
Q 021911 219 SDVA---QPDQARILALNASYFLKAGGHFVISIK 249 (305)
Q Consensus 219 ~d~~---~~~~~~~l~~~a~~~LkpGG~lv~s~~ 249 (305)
+... .++...++. ++.++|+|+|.|++++.
T Consensus 120 ~~~~l~~~~~~~~~l~-~~~~~L~~gG~l~v~~~ 152 (233)
T PRK05134 120 CMEMLEHVPDPASFVR-ACAKLVKPGGLVFFSTL 152 (233)
T ss_pred EhhHhhccCCHHHHHH-HHHHHcCCCcEEEEEec
Confidence 8544 345666776 99999999999998863
|
|
| >TIGR03587 Pse_Me-ase pseudaminic acid biosynthesis-associated methylase | Back alignment and domain information |
|---|
Probab=99.14 E-value=1.4e-09 Score=94.70 Aligned_cols=97 Identities=21% Similarity=0.256 Sum_probs=72.8
Q ss_pred CCCCCCEEEEEecCCCccHHHHHhhhCCCcEEEEEeCChHHHHHHHHHHHcC-CCeEEEEccCCCCcccccCCCcEeEEE
Q 021911 140 WIKPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKR-TNVIPIIEDARHPAKYRMLVGMVDVIF 218 (305)
Q Consensus 140 ~~~~g~~VLDlG~G~G~~t~~la~~~~~~~~V~avD~s~~~~~~l~~~a~~~-~nI~~~~~D~~~~~~~~~~~~~fD~V~ 218 (305)
.+.++.+|||+|||+|..+..++..+ +..+|++||+|+ ++++.++++ +++.+++.|+.++ ....+||+|+
T Consensus 40 ~~~~~~~VLDiGCG~G~~~~~L~~~~-~~~~v~giDiS~----~~l~~A~~~~~~~~~~~~d~~~~----~~~~sfD~V~ 110 (204)
T TIGR03587 40 RLPKIASILELGANIGMNLAALKRLL-PFKHIYGVEINE----YAVEKAKAYLPNINIIQGSLFDP----FKDNFFDLVL 110 (204)
T ss_pred hcCCCCcEEEEecCCCHHHHHHHHhC-CCCeEEEEECCH----HHHHHHHhhCCCCcEEEeeccCC----CCCCCEEEEE
Confidence 34567899999999999999999875 457999999999 666666654 6788888898763 2357999999
Q ss_pred EeCC----Chh-HHHHHHHHHhccCCCCcEEEEEE
Q 021911 219 SDVA----QPD-QARILALNASYFLKAGGHFVISI 248 (305)
Q Consensus 219 ~d~~----~~~-~~~~l~~~a~~~LkpGG~lv~s~ 248 (305)
++.. .++ ..+.+. ++.+++ +++++++.
T Consensus 111 ~~~vL~hl~p~~~~~~l~-el~r~~--~~~v~i~e 142 (204)
T TIGR03587 111 TKGVLIHINPDNLPTAYR-ELYRCS--NRYILIAE 142 (204)
T ss_pred ECChhhhCCHHHHHHHHH-HHHhhc--CcEEEEEE
Confidence 8654 233 455555 888887 34677765
|
Members of this small clade are methyltransferases of the pfam08241 family and are observed within operons for the biosynthesis of pseudaminic acid, a component of exopolysaccharide and flagellin glycosyl modifications. Notable among these genomes is Pseudomonas fluorescens PfO-1. Possibly one of the two hydroxyl groups of pseudaminic acid, at positions 4 and 8 is converted to a methoxy group by this enzyme |
| >PF01596 Methyltransf_3: O-methyltransferase; InterPro: IPR002935 Members of this family are O-methyltransferases | Back alignment and domain information |
|---|
Probab=99.14 E-value=9.6e-11 Score=101.92 Aligned_cols=119 Identities=18% Similarity=0.207 Sum_probs=89.0
Q ss_pred hHHHHHHHccccccCCCCCCEEEEEecCCCccHHHHHhhhCCCcEEEEEeCChHHHHHHHHHHHcC---CCeEEEEccCC
Q 021911 126 SKLAAAVLGGVDNIWIKPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKR---TNVIPIIEDAR 202 (305)
Q Consensus 126 s~l~a~ll~~l~~~~~~~g~~VLDlG~G~G~~t~~la~~~~~~~~V~avD~s~~~~~~l~~~a~~~---~nI~~~~~D~~ 202 (305)
+.....+|..|. ......+||||||++|..++++|+.+.+.++|+++|+++...+.+.++.++. .+|+++..|+.
T Consensus 30 ~~~~g~lL~~l~--~~~~~k~vLEIGt~~GySal~la~~l~~~g~i~tiE~~~~~~~~A~~~~~~ag~~~~I~~~~gda~ 107 (205)
T PF01596_consen 30 SPETGQLLQMLV--RLTRPKRVLEIGTFTGYSALWLAEALPEDGKITTIEIDPERAEIARENFRKAGLDDRIEVIEGDAL 107 (205)
T ss_dssp HHHHHHHHHHHH--HHHT-SEEEEESTTTSHHHHHHHHTSTTTSEEEEEESSHHHHHHHHHHHHHTTGGGGEEEEES-HH
T ss_pred CHHHHHHHHHHH--HhcCCceEEEeccccccHHHHHHHhhcccceEEEecCcHHHHHHHHHHHHhcCCCCcEEEEEeccH
Confidence 333444444333 2344579999999999999999999877899999999997766555555543 58999999987
Q ss_pred CCccc-c--cCCCcEeEEEEeCCChhHHHHHHHHHhccCCCCcEEEEE
Q 021911 203 HPAKY-R--MLVGMVDVIFSDVAQPDQARILALNASYFLKAGGHFVIS 247 (305)
Q Consensus 203 ~~~~~-~--~~~~~fD~V~~d~~~~~~~~~l~~~a~~~LkpGG~lv~s 247 (305)
+..+. . ...++||+||+|.........+. .+.++|+|||.+++-
T Consensus 108 ~~l~~l~~~~~~~~fD~VFiDa~K~~y~~y~~-~~~~ll~~ggvii~D 154 (205)
T PF01596_consen 108 EVLPELANDGEEGQFDFVFIDADKRNYLEYFE-KALPLLRPGGVIIAD 154 (205)
T ss_dssp HHHHHHHHTTTTTSEEEEEEESTGGGHHHHHH-HHHHHEEEEEEEEEE
T ss_pred hhHHHHHhccCCCceeEEEEcccccchhhHHH-HHhhhccCCeEEEEc
Confidence 64321 1 11358999999999888888887 888999999999886
|
The family includes also bacterial O-methyltransferases that may be involved in antibiotic production [].; GO: 0008171 O-methyltransferase activity; PDB: 1SUI_C 1SUS_D 3CBG_A 2GPY_B 3TR6_A 2AVD_A 3DUL_B 3DUW_B 2ZTH_A 1VID_A .... |
| >PHA03411 putative methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.14 E-value=7.1e-10 Score=99.74 Aligned_cols=124 Identities=18% Similarity=0.190 Sum_probs=83.4
Q ss_pred CCCCCEEEEEecCCCccHHHHHhhhCCCcEEEEEeCChHHHHHHHHHHHcC-CCeEEEEccCCCCcccccCCCcEeEEEE
Q 021911 141 IKPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKR-TNVIPIIEDARHPAKYRMLVGMVDVIFS 219 (305)
Q Consensus 141 ~~~g~~VLDlG~G~G~~t~~la~~~~~~~~V~avD~s~~~~~~l~~~a~~~-~nI~~~~~D~~~~~~~~~~~~~fD~V~~ 219 (305)
..+..+|||+|||+|.++..++... +..+|++||+|+ .+++.++++ +++.+++.|+.+... ..+||+|++
T Consensus 62 ~~~~grVLDLGcGsGilsl~la~r~-~~~~V~gVDisp----~al~~Ar~n~~~v~~v~~D~~e~~~----~~kFDlIIs 132 (279)
T PHA03411 62 AHCTGKVLDLCAGIGRLSFCMLHRC-KPEKIVCVELNP----EFARIGKRLLPEAEWITSDVFEFES----NEKFDVVIS 132 (279)
T ss_pred cccCCeEEEcCCCCCHHHHHHHHhC-CCCEEEEEECCH----HHHHHHHHhCcCCEEEECchhhhcc----cCCCcEEEE
Confidence 4456799999999999999988874 245899999999 566666554 679999999987642 358999999
Q ss_pred eCCC-----hhH------------------HHHHHHHHhccCCCCcEEEEEEcccc-cCCCCchhhhHHHHHHHHHHCCC
Q 021911 220 DVAQ-----PDQ------------------ARILALNASYFLKAGGHFVISIKANC-IDSTVPAEAVFQSEVKKLQQDQF 275 (305)
Q Consensus 220 d~~~-----~~~------------------~~~l~~~a~~~LkpGG~lv~s~~~~~-i~~~~~~~~v~~~~~~~l~~~Gf 275 (305)
|+|. .++ .+.+. .+..+|+|+|.+++..-... .+....+.+. .+.|++.||
T Consensus 133 NPPF~~l~~~d~~~~~~~~GG~~g~~~l~~~~~l~-~v~~~L~p~G~~~~~yss~~~y~~sl~~~~y----~~~l~~~g~ 207 (279)
T PHA03411 133 NPPFGKINTTDTKDVFEYTGGEFEFKVMTLGQKFA-DVGYFIVPTGSAGFAYSGRPYYDGTMKSNKY----LKWSKQTGL 207 (279)
T ss_pred cCCccccCchhhhhhhhhccCccccccccHHHHHh-hhHheecCCceEEEEEeccccccccCCHHHH----HHHHHhcCc
Confidence 9992 111 22333 56788999997766531111 1222222222 355577777
Q ss_pred cEe
Q 021911 276 KPF 278 (305)
Q Consensus 276 ~~~ 278 (305)
...
T Consensus 208 ~~~ 210 (279)
T PHA03411 208 VTY 210 (279)
T ss_pred Eec
Confidence 643
|
|
| >TIGR02021 BchM-ChlM magnesium protoporphyrin O-methyltransferase | Back alignment and domain information |
|---|
Probab=99.13 E-value=7.4e-10 Score=97.30 Aligned_cols=97 Identities=24% Similarity=0.237 Sum_probs=70.9
Q ss_pred CCCCCEEEEEecCCCccHHHHHhhhCCCcEEEEEeCChHHHHHHHHHHHcC---CCeEEEEccCCCCcccccCCCcEeEE
Q 021911 141 IKPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKR---TNVIPIIEDARHPAKYRMLVGMVDVI 217 (305)
Q Consensus 141 ~~~g~~VLDlG~G~G~~t~~la~~~~~~~~V~avD~s~~~~~~l~~~a~~~---~nI~~~~~D~~~~~~~~~~~~~fD~V 217 (305)
..++.+|||+|||+|.++..++.. ...|+++|+|+.++..+.+.+... .++.+++.|+...+ .+||+|
T Consensus 53 ~~~~~~vLDiGcG~G~~~~~la~~---~~~v~gvD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~~------~~fD~i 123 (219)
T TIGR02021 53 PLKGKRVLDAGCGTGLLSIELAKR---GAIVKAVDISEQMVQMARNRAQGRDVAGNVEFEVNDLLSLC------GEFDIV 123 (219)
T ss_pred CCCCCEEEEEeCCCCHHHHHHHHC---CCEEEEEECCHHHHHHHHHHHHhcCCCCceEEEECChhhCC------CCcCEE
Confidence 456899999999999999999876 248999999996655554444332 37899999987653 689999
Q ss_pred EEeCC-----ChhHHHHHHHHHhccCCCCcEEEEE
Q 021911 218 FSDVA-----QPDQARILALNASYFLKAGGHFVIS 247 (305)
Q Consensus 218 ~~d~~-----~~~~~~~l~~~a~~~LkpGG~lv~s 247 (305)
++... .++...++. ++.++++++..+.++
T Consensus 124 i~~~~l~~~~~~~~~~~l~-~i~~~~~~~~~i~~~ 157 (219)
T TIGR02021 124 VCMDVLIHYPASDMAKALG-HLASLTKERVIFTFA 157 (219)
T ss_pred EEhhHHHhCCHHHHHHHHH-HHHHHhCCCEEEEEC
Confidence 87433 234455565 888888877655554
|
This model represents the S-adenosylmethionine-dependent O-methyltransferase responsible for methylation of magnesium protoporphyrin IX. This step is essentiasl for the biosynthesis of both chlorophyll and bacteriochlorophyll. This model encompasses two closely related clades, from cyanobacteria (and plants) where it is called ChlM and other photosynthetic bacteria where it is known as BchM. |
| >PRK05785 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.13 E-value=5.9e-10 Score=98.64 Aligned_cols=88 Identities=15% Similarity=0.206 Sum_probs=70.3
Q ss_pred CCCCEEEEEecCCCccHHHHHhhhCCCcEEEEEeCChHHHHHHHHHHHcCCCeEEEEccCCCCcccccCCCcEeEEEEeC
Q 021911 142 KPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKRTNVIPIIEDARHPAKYRMLVGMVDVIFSDV 221 (305)
Q Consensus 142 ~~g~~VLDlG~G~G~~t~~la~~~~~~~~V~avD~s~~~~~~l~~~a~~~~nI~~~~~D~~~~~~~~~~~~~fD~V~~d~ 221 (305)
.++.+|||+|||+|..+.++++.. ..+|+++|+|+ +|++.++++ ..+++.|+.+.+ +.+++||+|++..
T Consensus 50 ~~~~~VLDlGcGtG~~~~~l~~~~--~~~v~gvD~S~----~Ml~~a~~~--~~~~~~d~~~lp---~~d~sfD~v~~~~ 118 (226)
T PRK05785 50 GRPKKVLDVAAGKGELSYHFKKVF--KYYVVALDYAE----NMLKMNLVA--DDKVVGSFEALP---FRDKSFDVVMSSF 118 (226)
T ss_pred CCCCeEEEEcCCCCHHHHHHHHhc--CCEEEEECCCH----HHHHHHHhc--cceEEechhhCC---CCCCCEEEEEecC
Confidence 347899999999999999999885 35899999999 777777654 345778887664 2367999999976
Q ss_pred C---ChhHHHHHHHHHhccCCCC
Q 021911 222 A---QPDQARILALNASYFLKAG 241 (305)
Q Consensus 222 ~---~~~~~~~l~~~a~~~LkpG 241 (305)
. .++..+.+. +++++|||.
T Consensus 119 ~l~~~~d~~~~l~-e~~RvLkp~ 140 (226)
T PRK05785 119 ALHASDNIEKVIA-EFTRVSRKQ 140 (226)
T ss_pred hhhccCCHHHHHH-HHHHHhcCc
Confidence 6 356677777 999999994
|
|
| >COG2520 Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.12 E-value=5.6e-09 Score=96.79 Aligned_cols=137 Identities=25% Similarity=0.311 Sum_probs=100.8
Q ss_pred ccccCcc-eeEeecCCCceeeee------ecCchhhHHHHHHHccccccCCCCCCEEEEEecCCCccHHHHHhhhCCCcE
Q 021911 98 EAVYNEK-RISVQNEDGTKVEYR------IWNPFRSKLAAAVLGGVDNIWIKPGARVLYLGAASGTTVSHVSDIVGPNGV 170 (305)
Q Consensus 98 ~~~y~e~-~~~~~d~~~~~~~~~------~~~~~~s~l~a~ll~~l~~~~~~~g~~VLDlG~G~G~~t~~la~~~~~~~~ 170 (305)
+-+|++. ..++..++| +.|. .|+|..+.--..++. ...+|++|||+.||-|.+++.+|..- ..+
T Consensus 143 e~laGe~~teTihrE~G--~~f~vD~~Kv~Fsprl~~ER~Rva~-----~v~~GE~V~DmFAGVGpfsi~~Ak~g--~~~ 213 (341)
T COG2520 143 EVLAGERRTETIHRENG--CRFKVDVAKVYFSPRLSTERARVAE-----LVKEGETVLDMFAGVGPFSIPIAKKG--RPK 213 (341)
T ss_pred EEeecCCCceEEEecCC--EEEEEchHHeEECCCchHHHHHHHh-----hhcCCCEEEEccCCcccchhhhhhcC--Cce
Confidence 4456665 555555544 2222 256655555555654 34569999999999999999999883 334
Q ss_pred EEEEeCChHHHHHHHHHHHcC---CCeEEEEccCCCCcccccCCCcEeEEEEeCCChhHHHHHHHHHhccCCCCcEEEEE
Q 021911 171 VYAVEFSHRSGRDLVNMAKKR---TNVIPIIEDARHPAKYRMLVGMVDVIFSDVAQPDQARILALNASYFLKAGGHFVIS 247 (305)
Q Consensus 171 V~avD~s~~~~~~l~~~a~~~---~nI~~~~~D~~~~~~~~~~~~~fD~V~~d~~~~~~~~~l~~~a~~~LkpGG~lv~s 247 (305)
|+|+|++|.+++.|.++++.+ ..|.++++|++..... ...+|.|+++.|.. ..+.+. .|...|+++|.+.+.
T Consensus 214 V~A~diNP~A~~~L~eNi~LN~v~~~v~~i~gD~rev~~~---~~~aDrIim~~p~~-a~~fl~-~A~~~~k~~g~iHyy 288 (341)
T COG2520 214 VYAIDINPDAVEYLKENIRLNKVEGRVEPILGDAREVAPE---LGVADRIIMGLPKS-AHEFLP-LALELLKDGGIIHYY 288 (341)
T ss_pred EEEEecCHHHHHHHHHHHHhcCccceeeEEeccHHHhhhc---cccCCEEEeCCCCc-chhhHH-HHHHHhhcCcEEEEE
Confidence 999999999999999888877 3488999999887643 27899999877742 233344 777899999999987
Q ss_pred E
Q 021911 248 I 248 (305)
Q Consensus 248 ~ 248 (305)
+
T Consensus 289 ~ 289 (341)
T COG2520 289 E 289 (341)
T ss_pred e
Confidence 6
|
|
| >TIGR03438 probable methyltransferase | Back alignment and domain information |
|---|
Probab=99.11 E-value=7.8e-10 Score=101.97 Aligned_cols=107 Identities=16% Similarity=0.203 Sum_probs=73.4
Q ss_pred CCCCCEEEEEecCCCccHHHHHhhhCCCcEEEEEeCChHHHHHHHHHHHcC-C--CeEEEEccCCCCcccccCC--CcEe
Q 021911 141 IKPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKR-T--NVIPIIEDARHPAKYRMLV--GMVD 215 (305)
Q Consensus 141 ~~~g~~VLDlG~G~G~~t~~la~~~~~~~~V~avD~s~~~~~~l~~~a~~~-~--nI~~~~~D~~~~~~~~~~~--~~fD 215 (305)
+.++.+|||+|||+|.++..|++.+....+|++||+|+.++..+.+.+... + +|.++++|+.+........ ....
T Consensus 61 ~~~~~~iLELGcGtG~~t~~Ll~~l~~~~~~~~iDiS~~mL~~a~~~l~~~~p~~~v~~i~gD~~~~~~~~~~~~~~~~~ 140 (301)
T TIGR03438 61 TGAGCELVELGSGSSRKTRLLLDALRQPARYVPIDISADALKESAAALAADYPQLEVHGICADFTQPLALPPEPAAGRRL 140 (301)
T ss_pred hCCCCeEEecCCCcchhHHHHHHhhccCCeEEEEECCHHHHHHHHHHHHhhCCCceEEEEEEcccchhhhhcccccCCeE
Confidence 456789999999999999999998643468999999996655555544332 3 4677899997643221001 1233
Q ss_pred EEEEeCC-----ChhHHHHHHHHHhccCCCCcEEEEEE
Q 021911 216 VIFSDVA-----QPDQARILALNASYFLKAGGHFVISI 248 (305)
Q Consensus 216 ~V~~d~~-----~~~~~~~l~~~a~~~LkpGG~lv~s~ 248 (305)
+++++.+ ..+..++|. ++++.|+|||.|++.+
T Consensus 141 ~~~~gs~~~~~~~~e~~~~L~-~i~~~L~pgG~~lig~ 177 (301)
T TIGR03438 141 GFFPGSTIGNFTPEEAVAFLR-RIRQLLGPGGGLLIGV 177 (301)
T ss_pred EEEecccccCCCHHHHHHHHH-HHHHhcCCCCEEEEec
Confidence 4444333 234555665 9999999999999976
|
This model represents a distinct set of uncharacterized proteins found in the bacteria. Analysis by PSI-BLAST shows remote sequence homology to methyltransferases |
| >KOG4300 consensus Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.11 E-value=4.7e-10 Score=95.56 Aligned_cols=99 Identities=16% Similarity=0.238 Sum_probs=79.4
Q ss_pred CEEEEEecCCCccHHHHHhhhCCCcEEEEEeCChHHHHHHHHHHHcC--CCeE-EEEccCCCCcccccCCCcEeEEEEeC
Q 021911 145 ARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKR--TNVI-PIIEDARHPAKYRMLVGMVDVIFSDV 221 (305)
Q Consensus 145 ~~VLDlG~G~G~~t~~la~~~~~~~~V~avD~s~~~~~~l~~~a~~~--~nI~-~~~~D~~~~~~~~~~~~~fD~V~~d~ 221 (305)
..||++|||||..-...-.. |..+|+.+|.++.+-+-+.+.++++ .++. ++++|.++.+.. .+.++|+|++..
T Consensus 78 ~~vLEvgcGtG~Nfkfy~~~--p~~svt~lDpn~~mee~~~ks~~E~k~~~~~~fvva~ge~l~~l--~d~s~DtVV~Tl 153 (252)
T KOG4300|consen 78 GDVLEVGCGTGANFKFYPWK--PINSVTCLDPNEKMEEIADKSAAEKKPLQVERFVVADGENLPQL--ADGSYDTVVCTL 153 (252)
T ss_pred cceEEecccCCCCcccccCC--CCceEEEeCCcHHHHHHHHHHHhhccCcceEEEEeechhcCccc--ccCCeeeEEEEE
Confidence 46899999999987776654 6789999999996655555555444 5777 889999887644 368999999865
Q ss_pred C---ChhHHHHHHHHHhccCCCCcEEEEEE
Q 021911 222 A---QPDQARILALNASYFLKAGGHFVISI 248 (305)
Q Consensus 222 ~---~~~~~~~l~~~a~~~LkpGG~lv~s~ 248 (305)
. ..++.+.|. ++.++|+|||++++..
T Consensus 154 vLCSve~~~k~L~-e~~rlLRpgG~iifiE 182 (252)
T KOG4300|consen 154 VLCSVEDPVKQLN-EVRRLLRPGGRIIFIE 182 (252)
T ss_pred EEeccCCHHHHHH-HHHHhcCCCcEEEEEe
Confidence 4 678899998 9999999999999976
|
|
| >PLN02476 O-methyltransferase | Back alignment and domain information |
|---|
Probab=99.10 E-value=6.9e-10 Score=100.50 Aligned_cols=107 Identities=17% Similarity=0.079 Sum_probs=85.5
Q ss_pred CCCCCCEEEEEecCCCccHHHHHhhhCCCcEEEEEeCChHHHHHHHHHHHcC---CCeEEEEccCCCCcccc---cCCCc
Q 021911 140 WIKPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKR---TNVIPIIEDARHPAKYR---MLVGM 213 (305)
Q Consensus 140 ~~~~g~~VLDlG~G~G~~t~~la~~~~~~~~V~avD~s~~~~~~l~~~a~~~---~nI~~~~~D~~~~~~~~---~~~~~ 213 (305)
......+|||+|+++|..++++|..+.+.+.|+++|.++.+.+.+.++.++. ++|+++..|+.+..+.. ....+
T Consensus 115 ~~~~ak~VLEIGT~tGySal~lA~al~~~G~V~TiE~d~e~~~~Ar~n~~~aGl~~~I~li~GdA~e~L~~l~~~~~~~~ 194 (278)
T PLN02476 115 QILGAERCIEVGVYTGYSSLAVALVLPESGCLVACERDSNSLEVAKRYYELAGVSHKVNVKHGLAAESLKSMIQNGEGSS 194 (278)
T ss_pred HhcCCCeEEEecCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHHHHhcccCCC
Confidence 3455689999999999999999998877889999999997766655555544 58999999986643210 01358
Q ss_pred EeEEEEeCCChhHHHHHHHHHhccCCCCcEEEEE
Q 021911 214 VDVIFSDVAQPDQARILALNASYFLKAGGHFVIS 247 (305)
Q Consensus 214 fD~V~~d~~~~~~~~~l~~~a~~~LkpGG~lv~s 247 (305)
||+||.|.........+. .+.++|+|||.+++-
T Consensus 195 FD~VFIDa~K~~Y~~y~e-~~l~lL~~GGvIV~D 227 (278)
T PLN02476 195 YDFAFVDADKRMYQDYFE-LLLQLVRVGGVIVMD 227 (278)
T ss_pred CCEEEECCCHHHHHHHHH-HHHHhcCCCcEEEEe
Confidence 999999999877777777 888999999998875
|
|
| >PF05724 TPMT: Thiopurine S-methyltransferase (TPMT); InterPro: IPR008854 This family consists of thiopurine S-methyltransferase proteins from both eukaryotes and prokaryotes | Back alignment and domain information |
|---|
Probab=99.09 E-value=9.6e-10 Score=96.63 Aligned_cols=137 Identities=21% Similarity=0.206 Sum_probs=94.3
Q ss_pred CCCCCCEEEEEecCCCccHHHHHhhhCCCcEEEEEeCChHHHHHHHHHHHcC--------------CCeEEEEccCCCCc
Q 021911 140 WIKPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKR--------------TNVIPIIEDARHPA 205 (305)
Q Consensus 140 ~~~~g~~VLDlG~G~G~~t~~la~~~~~~~~V~avD~s~~~~~~l~~~a~~~--------------~nI~~~~~D~~~~~ 205 (305)
..+++.+||..|||.|.-...||+. ...|++||+|+.+++.+.+..... .+|++.++|+.++.
T Consensus 34 ~~~~~~rvLvPgCG~g~D~~~La~~---G~~VvGvDls~~Ai~~~~~e~~~~~~~~~~~~~~~~~~~~i~~~~gDfF~l~ 110 (218)
T PF05724_consen 34 ALKPGGRVLVPGCGKGYDMLWLAEQ---GHDVVGVDLSPTAIEQAFEENNLEPTVTSVGGFKRYQAGRITIYCGDFFELP 110 (218)
T ss_dssp TTSTSEEEEETTTTTSCHHHHHHHT---TEEEEEEES-HHHHHHHHHHCTTEEECTTCTTEEEETTSSEEEEES-TTTGG
T ss_pred CCCCCCeEEEeCCCChHHHHHHHHC---CCeEEEEecCHHHHHHHHHHhccCCCcccccceeeecCCceEEEEcccccCC
Confidence 5678889999999999999999987 258999999998777765443321 36889999998876
Q ss_pred ccccCCCcEeEEEEeCC----ChhHHHHHHHHHhccCCCCcEEEEEEc-ccccCCCCchhhhHHHHHHHHHHCCCcEeEE
Q 021911 206 KYRMLVGMVDVIFSDVA----QPDQARILALNASYFLKAGGHFVISIK-ANCIDSTVPAEAVFQSEVKKLQQDQFKPFEQ 280 (305)
Q Consensus 206 ~~~~~~~~fD~V~~d~~----~~~~~~~l~~~a~~~LkpGG~lv~s~~-~~~i~~~~~~~~v~~~~~~~l~~~Gf~~~e~ 280 (305)
.. ..++||+|+=... .|++......++.++|||+|.+++.+. .......-+|..+-.+++..+-..+|++...
T Consensus 111 ~~--~~g~fD~iyDr~~l~Alpp~~R~~Ya~~l~~ll~p~g~~lLi~l~~~~~~~~GPPf~v~~~ev~~l~~~~f~i~~l 188 (218)
T PF05724_consen 111 PE--DVGKFDLIYDRTFLCALPPEMRERYAQQLASLLKPGGRGLLITLEYPQGEMEGPPFSVTEEEVRELFGPGFEIEEL 188 (218)
T ss_dssp GS--CHHSEEEEEECSSTTTS-GGGHHHHHHHHHHCEEEEEEEEEEEEES-CSCSSSSS----HHHHHHHHTTTEEEEEE
T ss_pred hh--hcCCceEEEEecccccCCHHHHHHHHHHHHHHhCCCCcEEEEEEEcCCcCCCCcCCCCCHHHHHHHhcCCcEEEEE
Confidence 43 2358999995332 566666666699999999999544432 1222233456667777888887788887765
Q ss_pred e
Q 021911 281 V 281 (305)
Q Consensus 281 ~ 281 (305)
.
T Consensus 189 ~ 189 (218)
T PF05724_consen 189 E 189 (218)
T ss_dssp E
T ss_pred e
Confidence 4
|
Thiopurine S-methyltransferase (TPMT) is a cytosolic enzyme that catalyses S-methylation of aromatic and heterocyclic sulphydryl compounds, including anticancer and immunosuppressive thiopurines [].; GO: 0008119 thiopurine S-methyltransferase activity, 0008152 metabolic process, 0005737 cytoplasm; PDB: 1PJZ_A 2H11_A 2BZG_A 3LCC_A 3BGD_A 2GB4_A 3BGI_B. |
| >PLN02366 spermidine synthase | Back alignment and domain information |
|---|
Probab=99.09 E-value=6.8e-09 Score=95.76 Aligned_cols=148 Identities=14% Similarity=0.130 Sum_probs=96.3
Q ss_pred CCCCEEEEEecCCCccHHHHHhhhCCCcEEEEEeCChHHHHHHHHHHHc------CCCeEEEEccCCCCcccccCCCcEe
Q 021911 142 KPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKK------RTNVIPIIEDARHPAKYRMLVGMVD 215 (305)
Q Consensus 142 ~~g~~VLDlG~G~G~~t~~la~~~~~~~~V~avD~s~~~~~~l~~~a~~------~~nI~~~~~D~~~~~~~~~~~~~fD 215 (305)
....+||+||||.|.++..+++. .+-.+|+.||+++..++-+.+.... .+++++++.|+...... ...+.||
T Consensus 90 ~~pkrVLiIGgG~G~~~rellk~-~~v~~V~~VEiD~~Vi~~ar~~f~~~~~~~~dpRv~vi~~Da~~~l~~-~~~~~yD 167 (308)
T PLN02366 90 PNPKKVLVVGGGDGGVLREIARH-SSVEQIDICEIDKMVIDVSKKFFPDLAVGFDDPRVNLHIGDGVEFLKN-APEGTYD 167 (308)
T ss_pred CCCCeEEEEcCCccHHHHHHHhC-CCCCeEEEEECCHHHHHHHHHhhhhhccccCCCceEEEEChHHHHHhh-ccCCCCC
Confidence 34589999999999999999987 2335899999999544443333221 25899999998665321 1135899
Q ss_pred EEEEeCCChh-------HHHHHHHHHhccCCCCcEEEEEEcccccCCCCchhhhHHHHHHHHHHCCC-cEeEE--eecCC
Q 021911 216 VIFSDVAQPD-------QARILALNASYFLKAGGHFVISIKANCIDSTVPAEAVFQSEVKKLQQDQF-KPFEQ--VTLEP 285 (305)
Q Consensus 216 ~V~~d~~~~~-------~~~~l~~~a~~~LkpGG~lv~s~~~~~i~~~~~~~~v~~~~~~~l~~~Gf-~~~e~--~~l~p 285 (305)
+|++|.+.|. ..+.+. .+++.|+|+|.|+... .+... ....+....+.|++. | ..+.. ..+..
T Consensus 168 vIi~D~~dp~~~~~~L~t~ef~~-~~~~~L~pgGvlv~q~--~s~~~---~~~~~~~i~~tl~~~-F~~~v~~~~~~vPs 240 (308)
T PLN02366 168 AIIVDSSDPVGPAQELFEKPFFE-SVARALRPGGVVCTQA--ESMWL---HMDLIEDLIAICRET-FKGSVNYAWTTVPT 240 (308)
T ss_pred EEEEcCCCCCCchhhhhHHHHHH-HHHHhcCCCcEEEECc--CCccc---chHHHHHHHHHHHHH-CCCceeEEEecCCC
Confidence 9999887532 334555 8999999999997654 22111 123445556666666 5 34433 23444
Q ss_pred CC-CceEEEEEEEc
Q 021911 286 FE-RDHACVVGGYR 298 (305)
Q Consensus 286 ~~-~~~~~vv~~~~ 298 (305)
|. ..+.++++.+.
T Consensus 241 y~~g~w~f~~as~~ 254 (308)
T PLN02366 241 YPSGVIGFVLCSKE 254 (308)
T ss_pred cCCCceEEEEEECC
Confidence 64 35667777665
|
|
| >COG4122 Predicted O-methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.09 E-value=7.6e-10 Score=96.65 Aligned_cols=106 Identities=20% Similarity=0.268 Sum_probs=87.0
Q ss_pred CCCCCCEEEEEecCCCccHHHHHhhhCCCcEEEEEeCChHHHHHHHHHHHcC---CCeEEEE-ccCCCCcccccCCCcEe
Q 021911 140 WIKPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKR---TNVIPII-EDARHPAKYRMLVGMVD 215 (305)
Q Consensus 140 ~~~~g~~VLDlG~G~G~~t~~la~~~~~~~~V~avD~s~~~~~~l~~~a~~~---~nI~~~~-~D~~~~~~~~~~~~~fD 215 (305)
......+|||+|++.|..++++|..+..+++++++|+++++.+.+.++.++. +.|+.+. .|+.+.... ...++||
T Consensus 56 ~~~~~k~iLEiGT~~GySal~mA~~l~~~g~l~tiE~~~e~~~~A~~n~~~ag~~~~i~~~~~gdal~~l~~-~~~~~fD 134 (219)
T COG4122 56 RLSGPKRILEIGTAIGYSALWMALALPDDGRLTTIERDEERAEIARENLAEAGVDDRIELLLGGDALDVLSR-LLDGSFD 134 (219)
T ss_pred HhcCCceEEEeecccCHHHHHHHhhCCCCCeEEEEeCCHHHHHHHHHHHHHcCCcceEEEEecCcHHHHHHh-ccCCCcc
Confidence 3557799999999999999999999866889999999997766666665554 4588888 487655432 3468999
Q ss_pred EEEEeCCChhHHHHHHHHHhccCCCCcEEEEE
Q 021911 216 VIFSDVAQPDQARILALNASYFLKAGGHFVIS 247 (305)
Q Consensus 216 ~V~~d~~~~~~~~~l~~~a~~~LkpGG~lv~s 247 (305)
+||.|..-.+..+.+. .+.++|+|||.+++-
T Consensus 135 liFIDadK~~yp~~le-~~~~lLr~GGliv~D 165 (219)
T COG4122 135 LVFIDADKADYPEYLE-RALPLLRPGGLIVAD 165 (219)
T ss_pred EEEEeCChhhCHHHHH-HHHHHhCCCcEEEEe
Confidence 9999999888888887 888999999998885
|
|
| >PRK13256 thiopurine S-methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.09 E-value=3.2e-09 Score=93.51 Aligned_cols=136 Identities=15% Similarity=0.071 Sum_probs=94.5
Q ss_pred CCCCCCEEEEEecCCCccHHHHHhhhCCCcEEEEEeCChHHHHHHHHHHH--------------cCCCeEEEEccCCCCc
Q 021911 140 WIKPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAK--------------KRTNVIPIIEDARHPA 205 (305)
Q Consensus 140 ~~~~g~~VLDlG~G~G~~t~~la~~~~~~~~V~avD~s~~~~~~l~~~a~--------------~~~nI~~~~~D~~~~~ 205 (305)
.+.++.+||+.+||.|..+.+||+. + ..|++||+|+.+++.+.+.+. ...+|+++++|+.++.
T Consensus 40 ~~~~~~rvLvPgCGkg~D~~~LA~~-G--~~V~GvDlS~~Ai~~~~~e~~~~~~~~~~~~~~~~~~~~i~~~~gD~f~l~ 116 (226)
T PRK13256 40 NINDSSVCLIPMCGCSIDMLFFLSK-G--VKVIGIELSEKAVLSFFSQNTINYEVIHGNDYKLYKGDDIEIYVADIFNLP 116 (226)
T ss_pred CCCCCCeEEEeCCCChHHHHHHHhC-C--CcEEEEecCHHHHHHHHHHcCCCcceecccccceeccCceEEEEccCcCCC
Confidence 3456789999999999999999997 2 479999999988777655321 0147999999998875
Q ss_pred ccccCCCcEeEEEEeCC----ChhHHHHHHHHHhccCCCCcEEEEEEcccccCCCCchhhhHHHHHHHHHHCCCcEe
Q 021911 206 KYRMLVGMVDVIFSDVA----QPDQARILALNASYFLKAGGHFVISIKANCIDSTVPAEAVFQSEVKKLQQDQFKPF 278 (305)
Q Consensus 206 ~~~~~~~~fD~V~~d~~----~~~~~~~l~~~a~~~LkpGG~lv~s~~~~~i~~~~~~~~v~~~~~~~l~~~Gf~~~ 278 (305)
........||+|+-... .|+.......++.++|+|+|.+++.+........-++..+-.+++..+-...|.+.
T Consensus 117 ~~~~~~~~fD~VyDra~~~Alpp~~R~~Y~~~l~~lL~pgg~llll~~~~~~~~~GPPf~v~~~e~~~lf~~~~~i~ 193 (226)
T PRK13256 117 KIANNLPVFDIWYDRGAYIALPNDLRTNYAKMMLEVCSNNTQILLLVMEHDKKSQTPPYSVTQAELIKNFSAKIKFE 193 (226)
T ss_pred ccccccCCcCeeeeehhHhcCCHHHHHHHHHHHHHHhCCCcEEEEEEEecCCCCCCCCCcCCHHHHHHhccCCceEE
Confidence 32112357999874332 45655555558999999999998887422212233455566677777655555544
|
|
| >PF05958 tRNA_U5-meth_tr: tRNA (Uracil-5-)-methyltransferase; InterPro: IPR010280 This family consists of (uracil-5-)-methyltransferases 2 | Back alignment and domain information |
|---|
Probab=99.09 E-value=1.5e-09 Score=102.27 Aligned_cols=144 Identities=22% Similarity=0.184 Sum_probs=86.4
Q ss_pred HHHHHHHccccccCCCCCCEEEEEecCCCccHHHHHhhhCCCcEEEEEeCChHHHHHHHHHHHcC--CCeEEEEccCCCC
Q 021911 127 KLAAAVLGGVDNIWIKPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKR--TNVIPIIEDARHP 204 (305)
Q Consensus 127 ~l~a~ll~~l~~~~~~~g~~VLDlG~G~G~~t~~la~~~~~~~~V~avD~s~~~~~~l~~~a~~~--~nI~~~~~D~~~~ 204 (305)
++...+++.+ ...++ +|||+.||.|++++.||+.+. +|+|||+++.+++++.++++.+ .|++++..++.+.
T Consensus 184 ~l~~~~~~~l---~~~~~-~vlDlycG~G~fsl~la~~~~---~V~gvE~~~~av~~A~~Na~~N~i~n~~f~~~~~~~~ 256 (352)
T PF05958_consen 184 KLYEQALEWL---DLSKG-DVLDLYCGVGTFSLPLAKKAK---KVIGVEIVEEAVEDARENAKLNGIDNVEFIRGDAEDF 256 (352)
T ss_dssp HHHHHHHHHC---TT-TT-EEEEES-TTTCCHHHHHCCSS---EEEEEES-HHHHHHHHHHHHHTT--SEEEEE--SHHC
T ss_pred HHHHHHHHHh---hcCCC-cEEEEeecCCHHHHHHHhhCC---eEEEeeCCHHHHHHHHHHHHHcCCCcceEEEeeccch
Confidence 3444444433 34444 899999999999999999863 8999999998888888888876 7899998776432
Q ss_pred cc----------c---ccCCCcEeEEEEeCCChhHHHHHHHHHhccCCCCcEEEEEEcccccCCCCchhhhHHHHHHHHH
Q 021911 205 AK----------Y---RMLVGMVDVIFSDVAQPDQARILALNASYFLKAGGHFVISIKANCIDSTVPAEAVFQSEVKKLQ 271 (305)
Q Consensus 205 ~~----------~---~~~~~~fD~V~~d~~~~~~~~~l~~~a~~~LkpGG~lv~s~~~~~i~~~~~~~~v~~~~~~~l~ 271 (305)
.. . ......+|+|++|||-.-..+.+...+.+ + . +++|.. | ++. .++..+..|.
T Consensus 257 ~~~~~~~r~~~~~~~~~~~~~~~d~vilDPPR~G~~~~~~~~~~~-~--~-~ivYvS---C-----nP~-tlaRDl~~L~ 323 (352)
T PF05958_consen 257 AKALAKAREFNRLKGIDLKSFKFDAVILDPPRAGLDEKVIELIKK-L--K-RIVYVS---C-----NPA-TLARDLKILK 323 (352)
T ss_dssp CCHHCCS-GGTTGGGS-GGCTTESEEEE---TT-SCHHHHHHHHH-S--S-EEEEEE---S------HH-HHHHHHHHHH
T ss_pred hHHHHhhHHHHhhhhhhhhhcCCCEEEEcCCCCCchHHHHHHHhc-C--C-eEEEEE---C-----CHH-HHHHHHHHHh
Confidence 11 0 00123699999999933211111212222 2 2 666665 4 233 3466777776
Q ss_pred HCCCcEeEEeecCCCCCceE
Q 021911 272 QDQFKPFEQVTLEPFERDHA 291 (305)
Q Consensus 272 ~~Gf~~~e~~~l~p~~~~~~ 291 (305)
.+|++.++..++.|.+.+.
T Consensus 324 -~~y~~~~v~~~DmFP~T~H 342 (352)
T PF05958_consen 324 -EGYKLEKVQPVDMFPQTHH 342 (352)
T ss_dssp -CCEEEEEEEEE-SSTTSS-
T ss_pred -hcCEEEEEEEeecCCCCCc
Confidence 4899998888887776443
|
1.1.35 from EC from bacteria, archaea and eukaryotes. A 5-methyluridine (m(5)U) residue at position 54 is a conserved feature of bacterial and eukaryotic tRNAs. The methylation of U54 is catalysed by the tRNA(m5U54)methyltransferase, which in Saccharomyces cerevisiae is encoded by the nonessential TRM2 gene. It is thought that tRNA modification enzymes might have a role in tRNA maturation not necessarily linked to their known catalytic activity []. This protein family also contains the 23SrRNA methyltransferases, first proposed to be RNA methyltransferases by homology to the TrmA family. The member from Escherichia coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA [].; GO: 0008173 RNA methyltransferase activity, 0006396 RNA processing; PDB: 2VS1_A 2JJQ_A 2BH2_A 1UWV_A 3BT7_B. |
| >KOG2904 consensus Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.09 E-value=1.5e-09 Score=96.26 Aligned_cols=126 Identities=19% Similarity=0.188 Sum_probs=87.0
Q ss_pred CchhhHHHHHHHccccccCCCCCCEEEEEecCCCccHHHHHhhhCCCcEEEEEeCChHHHHHHHHHHHcC---CCeEEEE
Q 021911 122 NPFRSKLAAAVLGGVDNIWIKPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKR---TNVIPII 198 (305)
Q Consensus 122 ~~~~s~l~a~ll~~l~~~~~~~g~~VLDlG~G~G~~t~~la~~~~~~~~V~avD~s~~~~~~l~~~a~~~---~nI~~~~ 198 (305)
.|-...++..+++.+.+.....+..|||+|||+|..++.++..+. .++|+|||.|+.++.-+.++++.. ..|..++
T Consensus 127 RpETEE~V~~Vid~~~~~~~~~~~~ildlgtGSGaIslsll~~L~-~~~v~AiD~S~~Ai~La~eN~qr~~l~g~i~v~~ 205 (328)
T KOG2904|consen 127 RPETEEWVEAVIDALNNSEHSKHTHILDLGTGSGAISLSLLHGLP-QCTVTAIDVSKAAIKLAKENAQRLKLSGRIEVIH 205 (328)
T ss_pred CccHHHHHHHHHHHHhhhhhcccceEEEecCCccHHHHHHHhcCC-CceEEEEeccHHHHHHHHHHHHHHhhcCceEEEe
Confidence 344556666666666544334456999999999999999999884 889999999996655544444433 4566664
Q ss_pred ccCCCC--cccccCCCcEeEEEEeCCC----------------------------hhHHHHHHHHHhccCCCCcEEEEEE
Q 021911 199 EDARHP--AKYRMLVGMVDVIFSDVAQ----------------------------PDQARILALNASYFLKAGGHFVISI 248 (305)
Q Consensus 199 ~D~~~~--~~~~~~~~~fD~V~~d~~~----------------------------~~~~~~l~~~a~~~LkpGG~lv~s~ 248 (305)
-+++.. .++..+..+.|++++|+|. .+-...+..-+.++|+|||.+.+.+
T Consensus 206 ~~me~d~~~~~~l~~~~~dllvsNPPYI~~dD~~~l~~eV~~yEp~lALdGg~eG~~~~~~~~~~a~R~Lq~gg~~~le~ 285 (328)
T KOG2904|consen 206 NIMESDASDEHPLLEGKIDLLVSNPPYIRKDDNRQLKPEVRLYEPKLALDGGLEGYDNLVHYWLLATRMLQPGGFEQLEL 285 (328)
T ss_pred cccccccccccccccCceeEEecCCCcccccchhhcCchheecCchhhhccccchhHHHHHHHHhhHhhcccCCeEEEEe
Confidence 433221 2222356899999999991 1222223336889999999999998
|
|
| >PF01728 FtsJ: FtsJ-like methyltransferase; InterPro: IPR002877 RrmJ (FtsJ) is a well conserved heat shock protein present in prokaryotes, archaea, and eukaryotes | Back alignment and domain information |
|---|
Probab=99.08 E-value=2.7e-10 Score=97.14 Aligned_cols=114 Identities=32% Similarity=0.359 Sum_probs=74.8
Q ss_pred hhHHHHHHHccccccC-CCC--CCEEEEEecCCCccHHHHHhhhCCCcEEEEEeCChHHHHHHHHHHHcCCCeEEEEccC
Q 021911 125 RSKLAAAVLGGVDNIW-IKP--GARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKRTNVIPIIEDA 201 (305)
Q Consensus 125 ~s~l~a~ll~~l~~~~-~~~--g~~VLDlG~G~G~~t~~la~~~~~~~~V~avD~s~~~~~~l~~~a~~~~nI~~~~~D~ 201 (305)
.|+.+-++.+.++++. +.+ ..+||||||+||.++..+++...+.+.|+|||+.+. ...+++.+++.|+
T Consensus 2 vsRa~~KL~ei~~~~~~~~~~~~~~vlDlG~aPGGws~~~~~~~~~~~~v~avDl~~~---------~~~~~~~~i~~d~ 72 (181)
T PF01728_consen 2 VSRAAFKLYEIDEKFKIFKPGKGFTVLDLGAAPGGWSQVLLQRGGPAGRVVAVDLGPM---------DPLQNVSFIQGDI 72 (181)
T ss_dssp SSTHHHHHHHHHHTTSSS-TTTTEEEEEET-TTSHHHHHHHTSTTTEEEEEEEESSST---------GS-TTEEBTTGGG
T ss_pred CCHHHHHHHHHHHHCCCCCcccccEEEEcCCcccceeeeeeecccccceEEEEecccc---------ccccceeeeeccc
Confidence 4445555555555555 444 489999999999999999999756789999999982 2225777778887
Q ss_pred CCCcccc----cC---CCcEeEEEEeCCC--------------hhHHHHHHHHHhccCCCCcEEEEEE
Q 021911 202 RHPAKYR----ML---VGMVDVIFSDVAQ--------------PDQARILALNASYFLKAGGHFVISI 248 (305)
Q Consensus 202 ~~~~~~~----~~---~~~fD~V~~d~~~--------------~~~~~~l~~~a~~~LkpGG~lv~s~ 248 (305)
++..... .+ ...||+|++|++. ......+. -+..+|+|||.|++.+
T Consensus 73 ~~~~~~~~i~~~~~~~~~~~dlv~~D~~~~~~g~~~~d~~~~~~l~~~~l~-~a~~~L~~gG~~v~K~ 139 (181)
T PF01728_consen 73 TNPENIKDIRKLLPESGEKFDLVLSDMAPNVSGDRNIDEFISIRLILSQLL-LALELLKPGGTFVIKV 139 (181)
T ss_dssp EEEEHSHHGGGSHGTTTCSESEEEE-------SSHHSSHHHHHHHHHHHHH-HHHHHHCTTEEEEEEE
T ss_pred chhhHHHhhhhhccccccCcceeccccccCCCCchhhHHHHHHHHHHHHHH-HHHhhhcCCCEEEEEe
Confidence 6543211 11 1589999999951 11222232 4667899999999987
|
RrmJ is responsible for methylating 23 S rRNA at position U2552 in the aminoacyl (A)1-site of the ribosome []. U2552 is one of the five universally conserved A-loop residues and has been shown to be methylated at the ribose 2'-OH group in the majority of organisms investigated so far. This suggests that this modification plays an important role in the A-loop function. RrmJ recognises its methylation target only when the 23 S rRNA is present in 50 S ribosomal subunits. This suggests that the RrmJ-mediated methylation must occur late in the maturation process of the ribosome. This is in contrast to other known 23 S rRNA modifications that occur in earlier maturation steps. The 1.5 A crystal structure of RrmJ in complex with its cofactor S-adenosylmethionine revealed that RrmJ has a methyltransferase fold. The active site of RrmJ appears to be formed by a catalytic triad consisting of two lysine residues and the negatively charged aspartate residue. Another highly conserved glutamate residue that is present in the active site of RrmJ appears to play only a minor role in the methyltransfer reaction in vivo []. ; GO: 0003676 nucleic acid binding, 0008168 methyltransferase activity, 0032259 methylation; PDB: 3GCZ_A 2PLW_A 2NYU_A 2OXT_C 3EMD_A 3ELY_A 3ELW_A 3ELU_A 3ELD_A 3EMB_A .... |
| >TIGR02143 trmA_only tRNA (uracil-5-)-methyltransferase | Back alignment and domain information |
|---|
Probab=99.07 E-value=1.7e-09 Score=101.81 Aligned_cols=129 Identities=16% Similarity=0.093 Sum_probs=90.5
Q ss_pred CEEEEEecCCCccHHHHHhhhCCCcEEEEEeCChHHHHHHHHHHHcC--CCeEEEEccCCCCcccc-----c--C-----
Q 021911 145 ARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKR--TNVIPIIEDARHPAKYR-----M--L----- 210 (305)
Q Consensus 145 ~~VLDlG~G~G~~t~~la~~~~~~~~V~avD~s~~~~~~l~~~a~~~--~nI~~~~~D~~~~~~~~-----~--~----- 210 (305)
.+|||++||+|+++..+++.. ..|++||+++.+++.+.++++.+ .|+.++..|+.+..... . .
T Consensus 199 ~~vlDl~~G~G~~sl~la~~~---~~v~~vE~~~~av~~a~~n~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~~~~~~ 275 (353)
T TIGR02143 199 GDLLELYCGNGNFSLALAQNF---RRVLATEIAKPSVNAAQYNIAANNIDNVQIIRMSAEEFTQAMNGVREFRRLKGIDL 275 (353)
T ss_pred CcEEEEeccccHHHHHHHHhC---CEEEEEECCHHHHHHHHHHHHHcCCCcEEEEEcCHHHHHHHHhhcccccccccccc
Confidence 479999999999999999885 38999999998877777776655 58999999986643210 0 0
Q ss_pred -CCcEeEEEEeCCChhH-HHHHHHHHhccCCCCcEEEEEEcccccCCCCchhhhHHHHHHHHHHCCCcEeEEeecCCCCC
Q 021911 211 -VGMVDVIFSDVAQPDQ-ARILALNASYFLKAGGHFVISIKANCIDSTVPAEAVFQSEVKKLQQDQFKPFEQVTLEPFER 288 (305)
Q Consensus 211 -~~~fD~V~~d~~~~~~-~~~l~~~a~~~LkpGG~lv~s~~~~~i~~~~~~~~v~~~~~~~l~~~Gf~~~e~~~l~p~~~ 288 (305)
...||+|++|+|..-. ..++. .+ ++|...+|+|. ....++..+..|.+ +|++.+...++.|..
T Consensus 276 ~~~~~d~v~lDPPR~G~~~~~l~-~l---~~~~~ivYvsC----------~p~tlaRDl~~L~~-~Y~l~~v~~~DmFP~ 340 (353)
T TIGR02143 276 KSYNCSTIFVDPPRAGLDPDTCK-LV---QAYERILYISC----------NPETLKANLEQLSE-THRVERFALFDQFPY 340 (353)
T ss_pred ccCCCCEEEECCCCCCCcHHHHH-HH---HcCCcEEEEEc----------CHHHHHHHHHHHhc-CcEEEEEEEcccCCC
Confidence 1137999999994432 23333 22 34666666663 23446777777764 499998888887776
Q ss_pred ceE
Q 021911 289 DHA 291 (305)
Q Consensus 289 ~~~ 291 (305)
.+.
T Consensus 341 T~H 343 (353)
T TIGR02143 341 THH 343 (353)
T ss_pred CCc
Confidence 443
|
This family consists exclusively of proteins believed to act as tRNA (uracil-5-)-methyltransferase. All members of far are proteobacterial. The seed alignment was taken directly from pfam05958 in Pfam 12.0, but higher cutoffs are used to select only functionally equivalent proteins. Homologous proteins excluded by the higher cutoff scores of this model include other uracil methyltransferases, such as RumA, active on rRNA. |
| >COG0220 Predicted S-adenosylmethionine-dependent methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.06 E-value=1.4e-09 Score=95.83 Aligned_cols=102 Identities=21% Similarity=0.246 Sum_probs=87.3
Q ss_pred CEEEEEecCCCccHHHHHhhhCCCcEEEEEeCChHHHHHHHHHHHcC--CCeEEEEccCCCCcccccCCCcEeEEEEeCC
Q 021911 145 ARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKR--TNVIPIIEDARHPAKYRMLVGMVDVIFSDVA 222 (305)
Q Consensus 145 ~~VLDlG~G~G~~t~~la~~~~~~~~V~avD~s~~~~~~l~~~a~~~--~nI~~~~~D~~~~~~~~~~~~~fD~V~~d~~ 222 (305)
..+||||||.|.++.++|.. .|+..+++||+....+..+++.+.+. +||.+++.|+.....+-...+++|.|+++.|
T Consensus 50 pi~lEIGfG~G~~l~~~A~~-nP~~nfiGiEi~~~~v~~~l~k~~~~~l~Nlri~~~DA~~~l~~~~~~~sl~~I~i~FP 128 (227)
T COG0220 50 PIVLEIGFGMGEFLVEMAKK-NPEKNFLGIEIRVPGVAKALKKIKELGLKNLRLLCGDAVEVLDYLIPDGSLDKIYINFP 128 (227)
T ss_pred cEEEEECCCCCHHHHHHHHH-CCCCCEEEEEEehHHHHHHHHHHHHcCCCcEEEEcCCHHHHHHhcCCCCCeeEEEEECC
Confidence 58999999999999999998 48889999999998888888887766 4999999999887665434459999999999
Q ss_pred Chh-----------HHHHHHHHHhccCCCCcEEEEEE
Q 021911 223 QPD-----------QARILALNASYFLKAGGHFVISI 248 (305)
Q Consensus 223 ~~~-----------~~~~l~~~a~~~LkpGG~lv~s~ 248 (305)
.|+ |...+. .+.+.|||||.|.+.|
T Consensus 129 DPWpKkRH~KRRl~~~~fl~-~~a~~Lk~gG~l~~aT 164 (227)
T COG0220 129 DPWPKKRHHKRRLTQPEFLK-LYARKLKPGGVLHFAT 164 (227)
T ss_pred CCCCCccccccccCCHHHHH-HHHHHccCCCEEEEEe
Confidence 653 566666 7889999999999998
|
|
| >TIGR01983 UbiG ubiquinone biosynthesis O-methyltransferase | Back alignment and domain information |
|---|
Probab=99.06 E-value=3.7e-09 Score=92.86 Aligned_cols=100 Identities=21% Similarity=0.189 Sum_probs=75.1
Q ss_pred CCCEEEEEecCCCccHHHHHhhhCCCcEEEEEeCChHHHHHHHHHHHcC-C-CeEEEEccCCCCcccccCCCcEeEEEEe
Q 021911 143 PGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKR-T-NVIPIIEDARHPAKYRMLVGMVDVIFSD 220 (305)
Q Consensus 143 ~g~~VLDlG~G~G~~t~~la~~~~~~~~V~avD~s~~~~~~l~~~a~~~-~-nI~~~~~D~~~~~~~~~~~~~fD~V~~d 220 (305)
.+.+|||+|||+|.++..+++.. ..|+++|+|+..+..+.+.+... . ++.+++.|+.+.... ...+||+|+++
T Consensus 45 ~~~~vLdlG~G~G~~~~~l~~~~---~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~~~--~~~~~D~i~~~ 119 (224)
T TIGR01983 45 FGLRVLDVGCGGGLLSEPLARLG---ANVTGIDASEENIEVAKLHAKKDPLLKIEYRCTSVEDLAEK--GAKSFDVVTCM 119 (224)
T ss_pred CCCeEEEECCCCCHHHHHHHhcC---CeEEEEeCCHHHHHHHHHHHHHcCCCceEEEeCCHHHhhcC--CCCCccEEEeh
Confidence 47899999999999999988752 36999999996655554444333 2 588888887655422 13689999986
Q ss_pred CC---ChhHHHHHHHHHhccCCCCcEEEEEE
Q 021911 221 VA---QPDQARILALNASYFLKAGGHFVISI 248 (305)
Q Consensus 221 ~~---~~~~~~~l~~~a~~~LkpGG~lv~s~ 248 (305)
.. ..+...++. ++.++|+|+|.+++++
T Consensus 120 ~~l~~~~~~~~~l~-~~~~~L~~gG~l~i~~ 149 (224)
T TIGR01983 120 EVLEHVPDPQAFIR-ACAQLLKPGGILFFST 149 (224)
T ss_pred hHHHhCCCHHHHHH-HHHHhcCCCcEEEEEe
Confidence 54 345666676 9999999999999886
|
This model represents an O-methyltransferase believed to act at two points in the ubiquinone biosynthetic pathway in bacteria (UbiG) and fungi (COQ3). A separate methylase (MenG/UbiE) catalyzes the single C-methylation step. The most commonly used names for genes in this family do not indicate whether this gene is an O-methyl, or C-methyl transferase. |
| >smart00650 rADc Ribosomal RNA adenine dimethylases | Back alignment and domain information |
|---|
Probab=99.05 E-value=2.6e-09 Score=90.12 Aligned_cols=102 Identities=17% Similarity=0.098 Sum_probs=75.5
Q ss_pred CCCCCCEEEEEecCCCccHHHHHhhhCCCcEEEEEeCChHHHHHHHHHHHcCCCeEEEEccCCCCcccccCCCcEeEEEE
Q 021911 140 WIKPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKRTNVIPIIEDARHPAKYRMLVGMVDVIFS 219 (305)
Q Consensus 140 ~~~~g~~VLDlG~G~G~~t~~la~~~~~~~~V~avD~s~~~~~~l~~~a~~~~nI~~~~~D~~~~~~~~~~~~~fD~V~~ 219 (305)
.+.++.+|||+|||+|.++.++++. ..+|+++|+++.++..+.+.....+++++++.|+.+.... ...||+|++
T Consensus 10 ~~~~~~~vLEiG~G~G~lt~~l~~~---~~~v~~vE~~~~~~~~~~~~~~~~~~v~ii~~D~~~~~~~---~~~~d~vi~ 83 (169)
T smart00650 10 NLRPGDTVLEIGPGKGALTEELLER---AARVTAIEIDPRLAPRLREKFAAADNLTVIHGDALKFDLP---KLQPYKVVG 83 (169)
T ss_pred CCCCcCEEEEECCCccHHHHHHHhc---CCeEEEEECCHHHHHHHHHHhccCCCEEEEECchhcCCcc---ccCCCEEEE
Confidence 5677889999999999999999987 2589999999966655555544346899999999876432 236999999
Q ss_pred eCCChhHHHHHHHHHhc--cCCCCcEEEEEE
Q 021911 220 DVAQPDQARILALNASY--FLKAGGHFVISI 248 (305)
Q Consensus 220 d~~~~~~~~~l~~~a~~--~LkpGG~lv~s~ 248 (305)
|+|......++. .+.. .+.+++.|++..
T Consensus 84 n~Py~~~~~~i~-~~l~~~~~~~~~~l~~q~ 113 (169)
T smart00650 84 NLPYNISTPILF-KLLEEPPAFRDAVLMVQK 113 (169)
T ss_pred CCCcccHHHHHH-HHHhcCCCcceEEEEEEH
Confidence 999654455555 3332 244777777654
|
|
| >PHA03412 putative methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.05 E-value=1.4e-09 Score=95.78 Aligned_cols=92 Identities=17% Similarity=0.216 Sum_probs=68.5
Q ss_pred CCCEEEEEecCCCccHHHHHhhhC--CCcEEEEEeCChHHHHHHHHHHHcC-CCeEEEEccCCCCcccccCCCcEeEEEE
Q 021911 143 PGARVLYLGAASGTTVSHVSDIVG--PNGVVYAVEFSHRSGRDLVNMAKKR-TNVIPIIEDARHPAKYRMLVGMVDVIFS 219 (305)
Q Consensus 143 ~g~~VLDlG~G~G~~t~~la~~~~--~~~~V~avD~s~~~~~~l~~~a~~~-~nI~~~~~D~~~~~~~~~~~~~fD~V~~ 219 (305)
.+.+|||+|||+|.++..+++.+. +..+|++||+++ .+++.++.+ .++.+++.|+.... ...+||+||+
T Consensus 49 ~~grVLDlG~GSG~Lalala~~~~~~~~~~V~aVEID~----~Al~~Ar~n~~~~~~~~~D~~~~~----~~~~FDlIIs 120 (241)
T PHA03412 49 TSGSVVDLCAGIGGLSFAMVHMMMYAKPREIVCVELNH----TYYKLGKRIVPEATWINADALTTE----FDTLFDMAIS 120 (241)
T ss_pred CCCEEEEccChHHHHHHHHHHhcccCCCcEEEEEECCH----HHHHHHHhhccCCEEEEcchhccc----ccCCccEEEE
Confidence 367999999999999999998642 346899999999 556666554 57899999997643 2458999999
Q ss_pred eCCC-----h---------h-HHHHHHHHHhccCCCCcE
Q 021911 220 DVAQ-----P---------D-QARILALNASYFLKAGGH 243 (305)
Q Consensus 220 d~~~-----~---------~-~~~~l~~~a~~~LkpGG~ 243 (305)
|+|. . . ...++. .+.++|++|..
T Consensus 121 NPPY~~~~~~d~~ar~~g~~~~~~li~-~A~~Ll~~G~~ 158 (241)
T PHA03412 121 NPPFGKIKTSDFKGKYTGAEFEYKVIE-RASQIARQGTF 158 (241)
T ss_pred CCCCCCccccccCCcccccHHHHHHHH-HHHHHcCCCEE
Confidence 9991 1 1 233454 77786766654
|
|
| >PF07021 MetW: Methionine biosynthesis protein MetW; InterPro: IPR010743 This family consists of several bacterial and one archaeal methionine biosynthesis MetW proteins | Back alignment and domain information |
|---|
Probab=99.05 E-value=2.9e-09 Score=90.55 Aligned_cols=136 Identities=21% Similarity=0.217 Sum_probs=89.9
Q ss_pred CCCCCCEEEEEecCCCccHHHHHhhhCCCcEEEEEeCChHHHHHHHHHHHcCCCeEEEEccCCCCcccccCCCcEeEEEE
Q 021911 140 WIKPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKRTNVIPIIEDARHPAKYRMLVGMVDVIFS 219 (305)
Q Consensus 140 ~~~~g~~VLDlG~G~G~~t~~la~~~~~~~~V~avD~s~~~~~~l~~~a~~~~nI~~~~~D~~~~~~~~~~~~~fD~V~~ 219 (305)
.++|+++|||||||.|.+..+|.+. .....++||+++ +.+..+.++ .+..++.|+.+... .+.+++||.||+
T Consensus 10 ~I~pgsrVLDLGCGdG~LL~~L~~~--k~v~g~GvEid~----~~v~~cv~r-Gv~Viq~Dld~gL~-~f~d~sFD~VIl 81 (193)
T PF07021_consen 10 WIEPGSRVLDLGCGDGELLAYLKDE--KQVDGYGVEIDP----DNVAACVAR-GVSVIQGDLDEGLA-DFPDQSFDYVIL 81 (193)
T ss_pred HcCCCCEEEecCCCchHHHHHHHHh--cCCeEEEEecCH----HHHHHHHHc-CCCEEECCHHHhHh-hCCCCCccEEeh
Confidence 4689999999999999999999987 457899999999 444444443 57789999866432 245789999997
Q ss_pred eCC---ChhHHHHHHHHHhccCCCCcEEEEEEcccc-----------------------cCCCCchhhh-HHHHHHHHHH
Q 021911 220 DVA---QPDQARILALNASYFLKAGGHFVISIKANC-----------------------IDSTVPAEAV-FQSEVKKLQQ 272 (305)
Q Consensus 220 d~~---~~~~~~~l~~~a~~~LkpGG~lv~s~~~~~-----------------------i~~~~~~~~v-~~~~~~~l~~ 272 (305)
+-. .....++|. .+|+-|...+++.++-. .-.+.|-... +.+..+..++
T Consensus 82 sqtLQ~~~~P~~vL~----EmlRVgr~~IVsFPNFg~W~~R~~l~~~GrmPvt~~lPy~WYdTPNih~~Ti~DFe~lc~~ 157 (193)
T PF07021_consen 82 SQTLQAVRRPDEVLE----EMLRVGRRAIVSFPNFGHWRNRLQLLLRGRMPVTKALPYEWYDTPNIHLCTIKDFEDLCRE 157 (193)
T ss_pred HhHHHhHhHHHHHHH----HHHHhcCeEEEEecChHHHHHHHHHHhcCCCCCCCCCCCcccCCCCcccccHHHHHHHHHH
Confidence 655 233445555 44666777777763111 0011122221 2222334478
Q ss_pred CCCcEeEEeecCCCC
Q 021911 273 DQFKPFEQVTLEPFE 287 (305)
Q Consensus 273 ~Gf~~~e~~~l~p~~ 287 (305)
.++++++...+....
T Consensus 158 ~~i~I~~~~~~~~~~ 172 (193)
T PF07021_consen 158 LGIRIEERVFLDGGR 172 (193)
T ss_pred CCCEEEEEEEEcCCC
Confidence 899999988776654
|
Biosynthesis of methionine from homoserine in Pseudomonas putida takes place in three steps. The first step is the acylation of homoserine to yield an acyl-L-homoserine. This reaction is catalysed by the products of the metXW genes and is equivalent to the first step in enterobacteria, Gram-positive bacteria and fungi, except that in these microorganisms the reaction is catalysed by a single polypeptide (the product of the metA gene in Escherichia coli and the met5 gene product in Neurospora crassa). In P. putida, as in Gram-positive bacteria and certain fungi, the second and third steps are a direct sulphydrylation that converts the O-acyl-L-homoserine into homocysteine and further methylation to yield methionine. The latter reaction can be mediated by either of the two methionine synthetases present in the cells []. |
| >TIGR00417 speE spermidine synthase | Back alignment and domain information |
|---|
Probab=99.04 E-value=1.6e-08 Score=91.80 Aligned_cols=144 Identities=15% Similarity=0.105 Sum_probs=95.4
Q ss_pred CCEEEEEecCCCccHHHHHhhhCCCcEEEEEeCChHHHHHHHHHHHc------CCCeEEEEccCCCCcccccCCCcEeEE
Q 021911 144 GARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKK------RTNVIPIIEDARHPAKYRMLVGMVDVI 217 (305)
Q Consensus 144 g~~VLDlG~G~G~~t~~la~~~~~~~~V~avD~s~~~~~~l~~~a~~------~~nI~~~~~D~~~~~~~~~~~~~fD~V 217 (305)
..+||+||||+|.++..+++.. +..+|++||+++..++.+.+.... .+++++++.|+...... ...+||+|
T Consensus 73 p~~VL~iG~G~G~~~~~ll~~~-~~~~v~~veid~~vi~~a~~~~~~~~~~~~~~~v~i~~~D~~~~l~~--~~~~yDvI 149 (270)
T TIGR00417 73 PKHVLVIGGGDGGVLREVLKHK-SVEKATLVDIDEKVIELSKKFLPSLAGSYDDPRVDLQIDDGFKFLAD--TENTFDVI 149 (270)
T ss_pred CCEEEEEcCCchHHHHHHHhCC-CcceEEEEeCCHHHHHHHHHHhHhhcccccCCceEEEECchHHHHHh--CCCCccEE
Confidence 3599999999999998888763 345899999999555444443221 15688888887654322 24689999
Q ss_pred EEeCCChh-------HHHHHHHHHhccCCCCcEEEEEEcccccCCCCchhhhHHHHHHHHHHCCCcEeEEe--ecCCC-C
Q 021911 218 FSDVAQPD-------QARILALNASYFLKAGGHFVISIKANCIDSTVPAEAVFQSEVKKLQQDQFKPFEQV--TLEPF-E 287 (305)
Q Consensus 218 ~~d~~~~~-------~~~~l~~~a~~~LkpGG~lv~s~~~~~i~~~~~~~~v~~~~~~~l~~~Gf~~~e~~--~l~p~-~ 287 (305)
++|.+.+. ..+.+. ++.+.|+|+|.+++.. ++.. .....+......+++. |...... .+..| .
T Consensus 150 i~D~~~~~~~~~~l~~~ef~~-~~~~~L~pgG~lv~~~--~~~~---~~~~~~~~~~~tl~~~-F~~v~~~~~~vp~~~~ 222 (270)
T TIGR00417 150 IVDSTDPVGPAETLFTKEFYE-LLKKALNEDGIFVAQS--ESPW---IQLELITDLKRDVKEA-FPITEYYTANIPTYPS 222 (270)
T ss_pred EEeCCCCCCcccchhHHHHHH-HHHHHhCCCcEEEEcC--CCcc---cCHHHHHHHHHHHHHH-CCCeEEEEEEcCcccc
Confidence 99887332 345555 8999999999999875 2211 1233445555666655 6655432 34445 3
Q ss_pred CceEEEEEEE
Q 021911 288 RDHACVVGGY 297 (305)
Q Consensus 288 ~~~~~vv~~~ 297 (305)
..+.++++.+
T Consensus 223 g~~~~~~as~ 232 (270)
T TIGR00417 223 GLWTFTIGSK 232 (270)
T ss_pred chhEEEEEEC
Confidence 4577888876
|
the SpeE subunit of spermidine synthase catalysesthe reaction (putrescine + S-adenosylmethioninamine = spermidine + 5'-methylthioadenosine) and is involved in polyamine biosynthesis and in the biosynthesis of spermidine from arganine. The region between residues 77 and 120 of the seed alignment is thought to be involved in binding to decarboxylated SAM. |
| >KOG2361 consensus Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.03 E-value=2.5e-09 Score=93.27 Aligned_cols=98 Identities=30% Similarity=0.431 Sum_probs=73.7
Q ss_pred EEEEEecCCCccHHHHHhhhCCC--cEEEEEeCChHHHHHHHHHHHcC-----CCeEEEEccCCCCc-ccccCCCcEeEE
Q 021911 146 RVLYLGAASGTTVSHVSDIVGPN--GVVYAVEFSHRSGRDLVNMAKKR-----TNVIPIIEDARHPA-KYRMLVGMVDVI 217 (305)
Q Consensus 146 ~VLDlG~G~G~~t~~la~~~~~~--~~V~avD~s~~~~~~l~~~a~~~-----~nI~~~~~D~~~~~-~~~~~~~~fD~V 217 (305)
+||++|||.|.++..+.+.. ++ ..|+++|+|+++ ++..+++ .++...+.|++.+. ...+..+++|.|
T Consensus 74 ~ilEvGCGvGNtvfPll~~~-~n~~l~v~acDfsp~A----i~~vk~~~~~~e~~~~afv~Dlt~~~~~~~~~~~svD~i 148 (264)
T KOG2361|consen 74 TILEVGCGVGNTVFPLLKTS-PNNRLKVYACDFSPRA----IELVKKSSGYDESRVEAFVWDLTSPSLKEPPEEGSVDII 148 (264)
T ss_pred hheeeccCCCcccchhhhcC-CCCCeEEEEcCCChHH----HHHHHhccccchhhhcccceeccchhccCCCCcCccceE
Confidence 89999999999999998864 34 789999999944 4444443 46777788887765 334456789987
Q ss_pred EE----eCCChhHHHHHHHHHhccCCCCcEEEEEE
Q 021911 218 FS----DVAQPDQARILALNASYFLKAGGHFVISI 248 (305)
Q Consensus 218 ~~----d~~~~~~~~~l~~~a~~~LkpGG~lv~s~ 248 (305)
++ .+..|++......++.++|||||.|++..
T Consensus 149 t~IFvLSAi~pek~~~a~~nl~~llKPGG~llfrD 183 (264)
T KOG2361|consen 149 TLIFVLSAIHPEKMQSVIKNLRTLLKPGGSLLFRD 183 (264)
T ss_pred EEEEEEeccChHHHHHHHHHHHHHhCCCcEEEEee
Confidence 65 33356655544459999999999999975
|
|
| >PRK06202 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.02 E-value=3.2e-09 Score=94.16 Aligned_cols=96 Identities=17% Similarity=0.130 Sum_probs=68.4
Q ss_pred CCCCEEEEEecCCCccHHHHHhhh---CCCcEEEEEeCChHHHHHHHHHHHcC---CCeEEEEccCCCCcccccCCCcEe
Q 021911 142 KPGARVLYLGAASGTTVSHVSDIV---GPNGVVYAVEFSHRSGRDLVNMAKKR---TNVIPIIEDARHPAKYRMLVGMVD 215 (305)
Q Consensus 142 ~~g~~VLDlG~G~G~~t~~la~~~---~~~~~V~avD~s~~~~~~l~~~a~~~---~nI~~~~~D~~~~~~~~~~~~~fD 215 (305)
.+..+|||+|||+|.++..|++.+ ++..+|+++|+|+ ++++.++++ .++.+.+.|+...+. .+.+||
T Consensus 59 ~~~~~iLDlGcG~G~~~~~L~~~~~~~g~~~~v~gvD~s~----~~l~~a~~~~~~~~~~~~~~~~~~l~~---~~~~fD 131 (232)
T PRK06202 59 DRPLTLLDIGCGGGDLAIDLARWARRDGLRLEVTAIDPDP----RAVAFARANPRRPGVTFRQAVSDELVA---EGERFD 131 (232)
T ss_pred CCCcEEEEeccCCCHHHHHHHHHHHhCCCCcEEEEEcCCH----HHHHHHHhccccCCCeEEEEecccccc---cCCCcc
Confidence 566899999999999999988754 3445899999999 555555544 467777766654432 246999
Q ss_pred EEEEeCC---Chh--HHHHHHHHHhccCCCCcEEEEE
Q 021911 216 VIFSDVA---QPD--QARILALNASYFLKAGGHFVIS 247 (305)
Q Consensus 216 ~V~~d~~---~~~--~~~~l~~~a~~~LkpGG~lv~s 247 (305)
+|+++.. .++ ..+++. ++.++++ +.+++.
T Consensus 132 ~V~~~~~lhh~~d~~~~~~l~-~~~r~~~--~~~~i~ 165 (232)
T PRK06202 132 VVTSNHFLHHLDDAEVVRLLA-DSAALAR--RLVLHN 165 (232)
T ss_pred EEEECCeeecCChHHHHHHHH-HHHHhcC--eeEEEe
Confidence 9999765 222 345665 8999998 455554
|
|
| >PLN02672 methionine S-methyltransferase | Back alignment and domain information |
|---|
Probab=99.02 E-value=4.6e-09 Score=110.01 Aligned_cols=124 Identities=15% Similarity=0.074 Sum_probs=88.4
Q ss_pred CCEEEEEecCCCccHHHHHhhhCCCcEEEEEeCChHHHHHHHHHHHcC------------------CCeEEEEccCCCCc
Q 021911 144 GARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKR------------------TNVIPIIEDARHPA 205 (305)
Q Consensus 144 g~~VLDlG~G~G~~t~~la~~~~~~~~V~avD~s~~~~~~l~~~a~~~------------------~nI~~~~~D~~~~~ 205 (305)
+.+|||+|||+|..++.++..+ +..+|+++|+|+.++..+.++++.+ .+|.+++.|+.+..
T Consensus 119 ~~~VLDlG~GSG~Iai~La~~~-~~~~v~avDis~~Al~~A~~Na~~n~l~~~~~~~~~~~~~~l~~rV~f~~sDl~~~~ 197 (1082)
T PLN02672 119 DKTVAELGCGNGWISIAIAEKW-LPSKVYGLDINPRAVKVAWINLYLNALDDDGLPVYDGEGKTLLDRVEFYESDLLGYC 197 (1082)
T ss_pred CCEEEEEecchHHHHHHHHHHC-CCCEEEEEECCHHHHHHHHHHHHHcCcccccccccccccccccccEEEEECchhhhc
Confidence 4689999999999999999986 4569999999997777666666542 36899999987653
Q ss_pred ccccCCCcEeEEEEeCCC----------h-----h--------------------------HHHHHHHHHhccCCCCcEE
Q 021911 206 KYRMLVGMVDVIFSDVAQ----------P-----D--------------------------QARILALNASYFLKAGGHF 244 (305)
Q Consensus 206 ~~~~~~~~fD~V~~d~~~----------~-----~--------------------------~~~~l~~~a~~~LkpGG~l 244 (305)
.. ...+||+|++|+|. + + ..+++. ++.++|+|+|.|
T Consensus 198 ~~--~~~~fDlIVSNPPYI~~~e~~~l~~eV~~~ep~~~~~~~~p~~AL~g~~~g~dGL~~yr~i~~-~a~~~L~pgG~l 274 (1082)
T PLN02672 198 RD--NNIELDRIVGCIPQILNPNPEAMSKLVTENASEEFLYSLSNYCALQGFVEDQFGLGLIARAVE-EGISVIKPMGIM 274 (1082)
T ss_pred cc--cCCceEEEEECCCcCCCcchhhcChhhhhccccccccccCccccccCCCCCCcHHHHHHHHHH-HHHHhccCCCEE
Confidence 21 11369999999991 0 0 134444 888999999999
Q ss_pred EEEEcccccCCCCchhhhHHHHHH--HHHHCCCcEeEEee
Q 021911 245 VISIKANCIDSTVPAEAVFQSEVK--KLQQDQFKPFEQVT 282 (305)
Q Consensus 245 v~s~~~~~i~~~~~~~~v~~~~~~--~l~~~Gf~~~e~~~ 282 (305)
++.+-. .. .+.+. .+++.||+..+...
T Consensus 275 ~lEiG~-------~q----~~~v~~~l~~~~gf~~~~~~~ 303 (1082)
T PLN02672 275 IFNMGG-------RP----GQAVCERLFERRGFRITKLWQ 303 (1082)
T ss_pred EEEECc-------cH----HHHHHHHHHHHCCCCeeEEee
Confidence 998721 11 11222 44667888766543
|
|
| >PRK07580 Mg-protoporphyrin IX methyl transferase; Validated | Back alignment and domain information |
|---|
Probab=99.01 E-value=1.3e-08 Score=89.66 Aligned_cols=94 Identities=21% Similarity=0.202 Sum_probs=65.1
Q ss_pred CCCCCEEEEEecCCCccHHHHHhhhCCCcEEEEEeCChHHHHHHHHHHHcC---CCeEEEEccCCCCcccccCCCcEeEE
Q 021911 141 IKPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKR---TNVIPIIEDARHPAKYRMLVGMVDVI 217 (305)
Q Consensus 141 ~~~g~~VLDlG~G~G~~t~~la~~~~~~~~V~avD~s~~~~~~l~~~a~~~---~nI~~~~~D~~~~~~~~~~~~~fD~V 217 (305)
..++.+|||+|||+|.++..+++.. ..|+++|+|+.++..+.+..... .+|.+++.|+... ..+||+|
T Consensus 61 ~~~~~~vLDvGcG~G~~~~~l~~~~---~~v~~~D~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~------~~~fD~v 131 (230)
T PRK07580 61 DLTGLRILDAGCGVGSLSIPLARRG---AKVVASDISPQMVEEARERAPEAGLAGNITFEVGDLESL------LGRFDTV 131 (230)
T ss_pred CCCCCEEEEEeCCCCHHHHHHHHcC---CEEEEEECCHHHHHHHHHHHHhcCCccCcEEEEcCchhc------cCCcCEE
Confidence 4567899999999999999999762 36999999995555544443332 3688998884322 3689999
Q ss_pred EEeCC-----ChhHHHHHHHHHhccCCCCcEE
Q 021911 218 FSDVA-----QPDQARILALNASYFLKAGGHF 244 (305)
Q Consensus 218 ~~d~~-----~~~~~~~l~~~a~~~LkpGG~l 244 (305)
++... .++...++. ++.+.+++++.+
T Consensus 132 ~~~~~l~~~~~~~~~~~l~-~l~~~~~~~~~i 162 (230)
T PRK07580 132 VCLDVLIHYPQEDAARMLA-HLASLTRGSLIF 162 (230)
T ss_pred EEcchhhcCCHHHHHHHHH-HHHhhcCCeEEE
Confidence 98543 234445555 777766554433
|
|
| >cd02440 AdoMet_MTases S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy) | Back alignment and domain information |
|---|
Probab=99.01 E-value=5.2e-09 Score=78.56 Aligned_cols=97 Identities=31% Similarity=0.319 Sum_probs=73.0
Q ss_pred EEEEEecCCCccHHHHHhhhCCCcEEEEEeCChHHHHHHHHHHHc--CCCeEEEEccCCCCcccccCCCcEeEEEEeCCC
Q 021911 146 RVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKK--RTNVIPIIEDARHPAKYRMLVGMVDVIFSDVAQ 223 (305)
Q Consensus 146 ~VLDlG~G~G~~t~~la~~~~~~~~V~avD~s~~~~~~l~~~a~~--~~nI~~~~~D~~~~~~~~~~~~~fD~V~~d~~~ 223 (305)
+|||+|||+|.++..++.. ...+++++|+++.....+.+.... ..++.++..|+.+... .....||+|+++.+.
T Consensus 1 ~ildig~G~G~~~~~~~~~--~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~d~i~~~~~~ 76 (107)
T cd02440 1 RVLDLGCGTGALALALASG--PGARVTGVDISPVALELARKAAAALLADNVEVLKGDAEELPP--EADESFDVIISDPPL 76 (107)
T ss_pred CeEEEcCCccHHHHHHhcC--CCCEEEEEeCCHHHHHHHHHHHhcccccceEEEEcChhhhcc--ccCCceEEEEEccce
Confidence 4899999999999999882 456999999999655544422222 2678899999877653 124689999998884
Q ss_pred h----hHHHHHHHHHhccCCCCcEEEEE
Q 021911 224 P----DQARILALNASYFLKAGGHFVIS 247 (305)
Q Consensus 224 ~----~~~~~l~~~a~~~LkpGG~lv~s 247 (305)
. ....++. ++.++|+|+|.++++
T Consensus 77 ~~~~~~~~~~l~-~~~~~l~~~g~~~~~ 103 (107)
T cd02440 77 HHLVEDLARFLE-EARRLLKPGGVLVLT 103 (107)
T ss_pred eehhhHHHHHHH-HHHHHcCCCCEEEEE
Confidence 3 3445555 889999999999876
|
There are at least five structurally distinct families of AdoMet-MTases, class I being the largest and most diverse. Within this class enzymes can be classified by different substrate specificities (small molecules, lipids, nucleic acids, etc.) and different target atoms for methylation (nitrogen, oxygen, carbon, sulfur, etc.). |
| >PF08003 Methyltransf_9: Protein of unknown function (DUF1698); InterPro: IPR010017 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals | Back alignment and domain information |
|---|
Probab=99.00 E-value=3.5e-09 Score=95.87 Aligned_cols=135 Identities=18% Similarity=0.176 Sum_probs=89.8
Q ss_pred CCCCEEEEEecCCCccHHHHHhhhCCCcEEEEEeCChHHHHHHHHHH--HcCCCeEEEE-ccCCCCcccccCCCcEeEEE
Q 021911 142 KPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMA--KKRTNVIPII-EDARHPAKYRMLVGMVDVIF 218 (305)
Q Consensus 142 ~~g~~VLDlG~G~G~~t~~la~~~~~~~~V~avD~s~~~~~~l~~~a--~~~~nI~~~~-~D~~~~~~~~~~~~~fD~V~ 218 (305)
-.+.+||||||++|.++..++.. ....|+++|.++.....+.... ....+..+.. .-+.+.+. .+.||+||
T Consensus 114 L~gk~VLDIGC~nGY~~frM~~~--GA~~ViGiDP~~lf~~QF~~i~~~lg~~~~~~~lplgvE~Lp~----~~~FDtVF 187 (315)
T PF08003_consen 114 LKGKRVLDIGCNNGYYSFRMLGR--GAKSVIGIDPSPLFYLQFEAIKHFLGQDPPVFELPLGVEDLPN----LGAFDTVF 187 (315)
T ss_pred cCCCEEEEecCCCcHHHHHHhhc--CCCEEEEECCChHHHHHHHHHHHHhCCCccEEEcCcchhhccc----cCCcCEEE
Confidence 35899999999999999999987 4458999999986655533222 2112222222 23333332 36899999
Q ss_pred EeCC---ChhHHHHHHHHHhccCCCCcEEEEEEcccccCCCCch-----------hh-h----HHHHHHHHHHCCCcEeE
Q 021911 219 SDVA---QPDQARILALNASYFLKAGGHFVISIKANCIDSTVPA-----------EA-V----FQSEVKKLQQDQFKPFE 279 (305)
Q Consensus 219 ~d~~---~~~~~~~l~~~a~~~LkpGG~lv~s~~~~~i~~~~~~-----------~~-v----~~~~~~~l~~~Gf~~~e 279 (305)
|--. ..+....|. +++..|+|||.|++.|- .++..++. .. . ......+|++.||+.++
T Consensus 188 ~MGVLYHrr~Pl~~L~-~Lk~~L~~gGeLvLETl--vi~g~~~~~L~P~~rYa~m~nv~FiPs~~~L~~wl~r~gF~~v~ 264 (315)
T PF08003_consen 188 SMGVLYHRRSPLDHLK-QLKDSLRPGGELVLETL--VIDGDENTVLVPEDRYAKMRNVWFIPSVAALKNWLERAGFKDVR 264 (315)
T ss_pred EeeehhccCCHHHHHH-HHHHhhCCCCEEEEEEe--eecCCCceEEccCCcccCCCceEEeCCHHHHHHHHHHcCCceEE
Confidence 8554 456677777 88899999999999872 22222211 11 1 12235788999999999
Q ss_pred EeecCC
Q 021911 280 QVTLEP 285 (305)
Q Consensus 280 ~~~l~p 285 (305)
+++..+
T Consensus 265 ~v~~~~ 270 (315)
T PF08003_consen 265 CVDVSP 270 (315)
T ss_pred EecCcc
Confidence 987765
|
The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This entry represents a set of bacterial AdoMet-dependent tRNA (mo5U34)-methyltransferases. These enzymes catalyse the conversion of 5-hydroxyuridine (ho5U) to 5-methoxyuridine (mo5U) at the wobble position (34) of tRNA []. The 5-methoxyuridine is subsequently converted to uridine-5-oxyacetic acid, a modified nucleoside that is apparently necessary for the efficient decoding of G-ending Pro, Ala, and Val codons in these organisms [].; GO: 0016300 tRNA (uracil) methyltransferase activity, 0002098 tRNA wobble uridine modification |
| >PF02475 Met_10: Met-10+ like-protein; InterPro: IPR003402 This entry represents the Trm5 family | Back alignment and domain information |
|---|
Probab=98.99 E-value=2.7e-09 Score=92.37 Aligned_cols=115 Identities=23% Similarity=0.241 Sum_probs=77.3
Q ss_pred ecCchhhHHHHHHHccccccCCCCCCEEEEEecCCCccHHHHHhhhCCCcEEEEEeCChHHHHHHHHHHHcC---CCeEE
Q 021911 120 IWNPFRSKLAAAVLGGVDNIWIKPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKR---TNVIP 196 (305)
Q Consensus 120 ~~~~~~s~l~a~ll~~l~~~~~~~g~~VLDlG~G~G~~t~~la~~~~~~~~V~avD~s~~~~~~l~~~a~~~---~nI~~ 196 (305)
.|+|..+.--..+.. ..++++.|||+.||-|.+++.+|..- ....|+|+|++|.+++.|.+.++.+ .+|.+
T Consensus 83 yfs~rl~~Er~Ri~~-----~v~~~e~VlD~faGIG~f~l~~ak~~-~~~~V~A~d~Np~a~~~L~~Ni~lNkv~~~i~~ 156 (200)
T PF02475_consen 83 YFSPRLSTERRRIAN-----LVKPGEVVLDMFAGIGPFSLPIAKHG-KAKRVYAVDLNPDAVEYLKENIRLNKVENRIEV 156 (200)
T ss_dssp ---GGGHHHHHHHHT-----C--TT-EEEETT-TTTTTHHHHHHHT--SSEEEEEES-HHHHHHHHHHHHHTT-TTTEEE
T ss_pred EEccccHHHHHHHHh-----cCCcceEEEEccCCccHHHHHHhhhc-CccEEEEecCCHHHHHHHHHHHHHcCCCCeEEE
Confidence 356655555555553 36789999999999999999999852 4568999999999988888888776 56889
Q ss_pred EEccCCCCcccccCCCcEeEEEEeCCChhHHHHHHHHHhccCCCCcEEEE
Q 021911 197 IIEDARHPAKYRMLVGMVDVIFSDVAQPDQARILALNASYFLKAGGHFVI 246 (305)
Q Consensus 197 ~~~D~~~~~~~~~~~~~fD~V~~d~~~~~~~~~l~~~a~~~LkpGG~lv~ 246 (305)
++.|++.... ...||.|+++.|.... +.|. .+..++|++|.+.|
T Consensus 157 ~~~D~~~~~~----~~~~drvim~lp~~~~-~fl~-~~~~~~~~~g~ihy 200 (200)
T PF02475_consen 157 INGDAREFLP----EGKFDRVIMNLPESSL-EFLD-AALSLLKEGGIIHY 200 (200)
T ss_dssp EES-GGG-------TT-EEEEEE--TSSGG-GGHH-HHHHHEEEEEEEEE
T ss_pred EcCCHHHhcC----ccccCEEEECChHHHH-HHHH-HHHHHhcCCcEEEC
Confidence 9999987754 4799999998884332 3444 67789999988764
|
Trm5 specifically methylates the N1 position of guanosine-37 in various tRNAs [, , ]. Another members of this family, tRNA wybutosine-synthesizing protein 2 (Tyw2) and its homologues, are S-adenosyl-L-methionine-dependent transferases that act as a component of the wybutosine biosynthesis pathway [, ]. tRNA wybutosine-synthesizing protein 2 was originally thought to be a methyltransferase [].; GO: 0016740 transferase activity; PDB: 3A27_A 2ZZN_B 2YX1_A 2ZZM_A 3AY0_B 3K6R_A 3A26_A 3A25_A. |
| >TIGR00478 tly hemolysin TlyA family protein | Back alignment and domain information |
|---|
Probab=98.98 E-value=7.5e-09 Score=91.41 Aligned_cols=149 Identities=16% Similarity=0.164 Sum_probs=87.9
Q ss_pred hhhHHHHHHHccccccCC-CCCCEEEEEecCCCccHHHHHhhhCCCcEEEEEeCChHHHHHHHHHHHcCCCeE-EEEccC
Q 021911 124 FRSKLAAAVLGGVDNIWI-KPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKRTNVI-PIIEDA 201 (305)
Q Consensus 124 ~~s~l~a~ll~~l~~~~~-~~g~~VLDlG~G~G~~t~~la~~~~~~~~V~avD~s~~~~~~l~~~a~~~~nI~-~~~~D~ 201 (305)
|.|+-+..+...++.+.+ .++.+|||+|||+|.++..+++. ...+|+|||+++.. |...++..+++. +...|+
T Consensus 55 ~vsr~~~kL~~~l~~~~~~~~~~~vlDiG~gtG~~t~~l~~~--ga~~v~avD~~~~~---l~~~l~~~~~v~~~~~~ni 129 (228)
T TIGR00478 55 FVSRGGEKLKEALEEFNIDVKNKIVLDVGSSTGGFTDCALQK--GAKEVYGVDVGYNQ---LAEKLRQDERVKVLERTNI 129 (228)
T ss_pred hhhhhHHHHHHHHHhcCCCCCCCEEEEcccCCCHHHHHHHHc--CCCEEEEEeCCHHH---HHHHHhcCCCeeEeecCCc
Confidence 566666666665665544 36789999999999999999987 35689999999932 222344445543 444465
Q ss_pred CCCcccccCCCcEeEEEEeCCChhHHHHHHHHHhccCCCCcEEEEEEcccccCCC---------Cchhh---hHHHHHHH
Q 021911 202 RHPAKYRMLVGMVDVIFSDVAQPDQARILALNASYFLKAGGHFVISIKANCIDST---------VPAEA---VFQSEVKK 269 (305)
Q Consensus 202 ~~~~~~~~~~~~fD~V~~d~~~~~~~~~l~~~a~~~LkpGG~lv~s~~~~~i~~~---------~~~~~---v~~~~~~~ 269 (305)
+....... ..|++.+|++......++. .+..+|+| |.+++-.+....-.. .++.. +..+....
T Consensus 130 ~~~~~~~~---~~d~~~~DvsfiS~~~~l~-~i~~~l~~-~~~~~L~KPqFE~~~~~~~~~giv~~~~~~~~~~~~~~~~ 204 (228)
T TIGR00478 130 RYVTPADI---FPDFATFDVSFISLISILP-ELDLLLNP-NDLTLLFKPQFEAGREKKNKKGVVRDKEAIALALHKVIDK 204 (228)
T ss_pred ccCCHhHc---CCCceeeeEEEeehHhHHH-HHHHHhCc-CeEEEEcChHhhhcHhhcCcCCeecCHHHHHHHHHHHHHH
Confidence 53322211 1244444444333333555 88899999 888877654331111 01111 22222345
Q ss_pred HHHCCCcEeEEee
Q 021911 270 LQQDQFKPFEQVT 282 (305)
Q Consensus 270 l~~~Gf~~~e~~~ 282 (305)
+.+.||++.....
T Consensus 205 ~~~~~~~~~~~~~ 217 (228)
T TIGR00478 205 GESPDFQEKKIIF 217 (228)
T ss_pred HHcCCCeEeeEEE
Confidence 5677898876553
|
Hemolysins are exotoxins that attack blood cell membranes and cause cell rupture, often by forming a pore in the membrane. At least two members of this protein family have been characterized indirectly as pore-forming hemolysins, one from the spirochete Serpula (Treponema) hyodysenteriae and one from Mycobacterium tuberculosis. However, homology domains in this protein suggest methyltransferase activity (pfam01728) and RNA-binding activity (pfam01479). |
| >TIGR02081 metW methionine biosynthesis protein MetW | Back alignment and domain information |
|---|
Probab=98.98 E-value=8.4e-09 Score=88.96 Aligned_cols=95 Identities=23% Similarity=0.253 Sum_probs=67.9
Q ss_pred CCCCCEEEEEecCCCccHHHHHhhhCCCcEEEEEeCChHHHHHHHHHHHcCCCeEEEEccCCCCcccccCCCcEeEEEEe
Q 021911 141 IKPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKRTNVIPIIEDARHPAKYRMLVGMVDVIFSD 220 (305)
Q Consensus 141 ~~~g~~VLDlG~G~G~~t~~la~~~~~~~~V~avD~s~~~~~~l~~~a~~~~nI~~~~~D~~~~~~~~~~~~~fD~V~~d 220 (305)
++++.+|||+|||+|.++..+++.. ...++++|+|+ ++++.+++ .++.+++.|+.+.... ....+||+|+++
T Consensus 11 i~~~~~iLDiGcG~G~~~~~l~~~~--~~~~~giD~s~----~~i~~a~~-~~~~~~~~d~~~~l~~-~~~~sfD~Vi~~ 82 (194)
T TIGR02081 11 IPPGSRVLDLGCGDGELLALLRDEK--QVRGYGIEIDQ----DGVLACVA-RGVNVIQGDLDEGLEA-FPDKSFDYVILS 82 (194)
T ss_pred cCCCCEEEEeCCCCCHHHHHHHhcc--CCcEEEEeCCH----HHHHHHHH-cCCeEEEEEhhhcccc-cCCCCcCEEEEh
Confidence 4577899999999999999998763 34789999999 55555554 4688889998652110 134689999997
Q ss_pred CC---ChhHHHHHHHHHhccCCCCcEEEEE
Q 021911 221 VA---QPDQARILALNASYFLKAGGHFVIS 247 (305)
Q Consensus 221 ~~---~~~~~~~l~~~a~~~LkpGG~lv~s 247 (305)
.+ .++...++. ++.+.++ .++++
T Consensus 83 ~~l~~~~d~~~~l~-e~~r~~~---~~ii~ 108 (194)
T TIGR02081 83 QTLQATRNPEEILD-EMLRVGR---HAIVS 108 (194)
T ss_pred hHhHcCcCHHHHHH-HHHHhCC---eEEEE
Confidence 66 356666676 6666655 44444
|
This protein is found alongside MetX, of the enzyme that acylates homoserine as a first step toward methionine biosynthesis, in many species. It appears to act in methionine biosynthesis but is not fully characterized. |
| >TIGR00095 RNA methyltransferase, RsmD family | Back alignment and domain information |
|---|
Probab=98.97 E-value=5.6e-09 Score=89.85 Aligned_cols=120 Identities=15% Similarity=0.088 Sum_probs=79.6
Q ss_pred hhHHHHHHHccccccCCCCCCEEEEEecCCCccHHHHHhhhCCCcEEEEEeCChHHHHHHHHHHHcC---CCeEEEEccC
Q 021911 125 RSKLAAAVLGGVDNIWIKPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKR---TNVIPIIEDA 201 (305)
Q Consensus 125 ~s~l~a~ll~~l~~~~~~~g~~VLDlG~G~G~~t~~la~~~~~~~~V~avD~s~~~~~~l~~~a~~~---~nI~~~~~D~ 201 (305)
.+.+-..+...|. ..-++.+|||++||+|.+++.++.+ ....|++||.++.+++.+.++++.. .+++++..|+
T Consensus 33 ~~~vrea~f~~l~--~~~~g~~vLDLfaGsG~lglea~sr--ga~~v~~vE~~~~a~~~~~~N~~~~~~~~~~~~~~~D~ 108 (189)
T TIGR00095 33 TRVVRELFFNILR--PEIQGAHLLDVFAGSGLLGEEALSR--GAKVAFLEEDDRKANQTLKENLALLKSGEQAEVVRNSA 108 (189)
T ss_pred hHHHHHHHHHHHH--HhcCCCEEEEecCCCcHHHHHHHhC--CCCEEEEEeCCHHHHHHHHHHHHHhCCcccEEEEehhH
Confidence 4444444444333 1235789999999999999999988 2358999999998777666666544 3688999998
Q ss_pred CCCccc-ccCCCcEeEEEEeCCChh--HHHHHHH-HHhccCCCCcEEEEEE
Q 021911 202 RHPAKY-RMLVGMVDVIFSDVAQPD--QARILAL-NASYFLKAGGHFVISI 248 (305)
Q Consensus 202 ~~~~~~-~~~~~~fD~V~~d~~~~~--~~~~l~~-~a~~~LkpGG~lv~s~ 248 (305)
...... ......||+|+.|||... ...++.. .-..+|++++.+++.+
T Consensus 109 ~~~l~~~~~~~~~~dvv~~DPPy~~~~~~~~l~~l~~~~~l~~~~iiv~E~ 159 (189)
T TIGR00095 109 LRALKFLAKKPTFDNVIYLDPPFFNGALQALLELCENNWILEDTVLIVVEE 159 (189)
T ss_pred HHHHHHhhccCCCceEEEECcCCCCCcHHHHHHHHHHCCCCCCCeEEEEEe
Confidence 553221 001124899999999421 2222221 1235799999888876
|
This model represents a family of uncharacterized bacterial proteins. Members are present in nearly every complete bacterial genome, always in a single copy. PSI-BLAST analysis shows homology to several families of SAM-dependent methyltransferases, including ribosomal RNA adenine dimethylases. |
| >PF03602 Cons_hypoth95: Conserved hypothetical protein 95; InterPro: IPR004398 This entry contains Ribosomal RNA small subunit methyltransferase D as well as the putative rRNA methyltransferase YlbH | Back alignment and domain information |
|---|
Probab=98.97 E-value=1.1e-09 Score=93.64 Aligned_cols=123 Identities=21% Similarity=0.130 Sum_probs=82.4
Q ss_pred CchhhHHHHHHHccccccCCCCCCEEEEEecCCCccHHHHHhhhCCCcEEEEEeCChHHHHHHHHHHHcC---CCeEEEE
Q 021911 122 NPFRSKLAAAVLGGVDNIWIKPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKR---TNVIPII 198 (305)
Q Consensus 122 ~~~~s~l~a~ll~~l~~~~~~~g~~VLDlG~G~G~~t~~la~~~~~~~~V~avD~s~~~~~~l~~~a~~~---~nI~~~~ 198 (305)
.|...++-..+...|... .-++.+||||+||+|.+++..+++ ....|+.||.++.++..+.++++.- .++..+.
T Consensus 22 RPT~drvrealFniL~~~-~~~g~~vLDLFaGSGalGlEALSR--GA~~v~fVE~~~~a~~~i~~N~~~l~~~~~~~v~~ 98 (183)
T PF03602_consen 22 RPTTDRVREALFNILQPR-NLEGARVLDLFAGSGALGLEALSR--GAKSVVFVEKNRKAIKIIKKNLEKLGLEDKIRVIK 98 (183)
T ss_dssp -SSSHHHHHHHHHHHHCH--HTT-EEEETT-TTSHHHHHHHHT--T-SEEEEEES-HHHHHHHHHHHHHHT-GGGEEEEE
T ss_pred CCCcHHHHHHHHHHhccc-ccCCCeEEEcCCccCccHHHHHhc--CCCeEEEEECCHHHHHHHHHHHHHhCCCcceeeec
Confidence 455667767776666532 246899999999999999998887 4569999999998877776666543 3588888
Q ss_pred ccCCCCcc-cccCCCcEeEEEEeCCCh--hH-HHHHHHHHh--ccCCCCcEEEEEE
Q 021911 199 EDARHPAK-YRMLVGMVDVIFSDVAQP--DQ-ARILALNAS--YFLKAGGHFVISI 248 (305)
Q Consensus 199 ~D~~~~~~-~~~~~~~fD~V~~d~~~~--~~-~~~l~~~a~--~~LkpGG~lv~s~ 248 (305)
.|+..... .......||+|++|||.. .. .+++. .+. .+|+++|.+++.+
T Consensus 99 ~d~~~~l~~~~~~~~~fDiIflDPPY~~~~~~~~~l~-~l~~~~~l~~~~~ii~E~ 153 (183)
T PF03602_consen 99 GDAFKFLLKLAKKGEKFDIIFLDPPYAKGLYYEELLE-LLAENNLLNEDGLIIIEH 153 (183)
T ss_dssp SSHHHHHHHHHHCTS-EEEEEE--STTSCHHHHHHHH-HHHHTTSEEEEEEEEEEE
T ss_pred cCHHHHHHhhcccCCCceEEEECCCcccchHHHHHHH-HHHHCCCCCCCEEEEEEe
Confidence 89754432 111257999999999943 22 34444 443 8999999999987
|
They methylate the guanosine in position 966 of 16S rRNA in the assembled 30S particle [].; GO: 0008168 methyltransferase activity, 0031167 rRNA methylation; PDB: 3P9N_A 2ESR_B 2IFT_A 1WS6_A 2FPO_B 2FHP_A. |
| >COG1041 Predicted DNA modification methylase [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=98.97 E-value=9.6e-09 Score=94.74 Aligned_cols=124 Identities=21% Similarity=0.180 Sum_probs=91.3
Q ss_pred CCCCCCEEEEEecCCCccHHHHHhhhCCCcEEEEEeCChHHHHHHHHHHHcC--CCeEEEEc-cCCCCcccccCCCcEeE
Q 021911 140 WIKPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKR--TNVIPIIE-DARHPAKYRMLVGMVDV 216 (305)
Q Consensus 140 ~~~~g~~VLDlG~G~G~~t~~la~~~~~~~~V~avD~s~~~~~~l~~~a~~~--~nI~~~~~-D~~~~~~~~~~~~~fD~ 216 (305)
.+++|+.|||-.||||++...+... ...|+++|++.++++....+.+.. ....+... |++..+ . ...+||.
T Consensus 194 ~v~~G~~vlDPFcGTGgiLiEagl~---G~~viG~Did~~mv~gak~Nl~~y~i~~~~~~~~~Da~~lp-l--~~~~vda 267 (347)
T COG1041 194 RVKRGELVLDPFCGTGGILIEAGLM---GARVIGSDIDERMVRGAKINLEYYGIEDYPVLKVLDATNLP-L--RDNSVDA 267 (347)
T ss_pred ccccCCEeecCcCCccHHHHhhhhc---CceEeecchHHHHHhhhhhhhhhhCcCceeEEEecccccCC-C--CCCccce
Confidence 6889999999999999999987765 368999999996666544444443 34434444 998876 2 2346999
Q ss_pred EEEeCCC------------hhHHHHHHHHHhccCCCCcEEEEEEcccccCCCCchhhhHHHHHHHHHHCCCcEeEEeecC
Q 021911 217 IFSDVAQ------------PDQARILALNASYFLKAGGHFVISIKANCIDSTVPAEAVFQSEVKKLQQDQFKPFEQVTLE 284 (305)
Q Consensus 217 V~~d~~~------------~~~~~~l~~~a~~~LkpGG~lv~s~~~~~i~~~~~~~~v~~~~~~~l~~~Gf~~~e~~~l~ 284 (305)
|++|+|- ....++|. .++++||+||++++..+ .....++.+.+|+++..+...
T Consensus 268 IatDPPYGrst~~~~~~l~~Ly~~~le-~~~evLk~gG~~vf~~p--------------~~~~~~~~~~~f~v~~~~~~~ 332 (347)
T COG1041 268 IATDPPYGRSTKIKGEGLDELYEEALE-SASEVLKPGGRIVFAAP--------------RDPRHELEELGFKVLGRFTMR 332 (347)
T ss_pred EEecCCCCcccccccccHHHHHHHHHH-HHHHHhhcCcEEEEecC--------------CcchhhHhhcCceEEEEEEEe
Confidence 9999991 22455666 89999999999999973 112456678899998876544
|
|
| >COG2263 Predicted RNA methylase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.94 E-value=4.5e-09 Score=88.72 Aligned_cols=88 Identities=22% Similarity=0.124 Sum_probs=66.4
Q ss_pred HHHHHHHccccccCCCCCCEEEEEecCCCccHHHHHhhhCCCcEEEEEeCChHHHHHHHHHHHcC-CCeEEEEccCCCCc
Q 021911 127 KLAAAVLGGVDNIWIKPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKR-TNVIPIIEDARHPA 205 (305)
Q Consensus 127 ~l~a~ll~~l~~~~~~~g~~VLDlG~G~G~~t~~la~~~~~~~~V~avD~s~~~~~~l~~~a~~~-~nI~~~~~D~~~~~ 205 (305)
.+++.++........-.+.+|||+|||||.+++..+.. ...+|++||+++++++-+.+++.+. .+|.++++|++++.
T Consensus 29 ~~Aa~il~~a~~~g~l~g~~V~DlG~GTG~La~ga~~l--Ga~~V~~vdiD~~a~ei~r~N~~~l~g~v~f~~~dv~~~~ 106 (198)
T COG2263 29 PLAAYILWVAYLRGDLEGKTVLDLGAGTGILAIGAALL--GASRVLAVDIDPEALEIARANAEELLGDVEFVVADVSDFR 106 (198)
T ss_pred HHHHHHHHHHHHcCCcCCCEEEEcCCCcCHHHHHHHhc--CCcEEEEEecCHHHHHHHHHHHHhhCCceEEEEcchhhcC
Confidence 44555443222113445789999999999999988866 4569999999997766666666654 57999999998874
Q ss_pred ccccCCCcEeEEEEeCC
Q 021911 206 KYRMLVGMVDVIFSDVA 222 (305)
Q Consensus 206 ~~~~~~~~fD~V~~d~~ 222 (305)
..+|.|+.|+|
T Consensus 107 ------~~~dtvimNPP 117 (198)
T COG2263 107 ------GKFDTVIMNPP 117 (198)
T ss_pred ------CccceEEECCC
Confidence 68899999999
|
|
| >KOG3191 consensus Predicted N6-DNA-methyltransferase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.92 E-value=2.3e-08 Score=83.76 Aligned_cols=126 Identities=14% Similarity=0.210 Sum_probs=92.7
Q ss_pred CCCEEEEEecCCCccHHHHHhhhCCCcEEEEEeCChHHHHHHHHHHHcC-CCeEEEEccCCCCcccccCCCcEeEEEEeC
Q 021911 143 PGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKR-TNVIPIIEDARHPAKYRMLVGMVDVIFSDV 221 (305)
Q Consensus 143 ~g~~VLDlG~G~G~~t~~la~~~~~~~~V~avD~s~~~~~~l~~~a~~~-~nI~~~~~D~~~~~~~~~~~~~fD~V~~d~ 221 (305)
...-+||||||+|..+..|++.+.+.....++|++|++.+..++.|+.+ -++..++.|+..-.. .+++|+++.|+
T Consensus 43 ~~~i~lEIG~GSGvvstfL~~~i~~~~~~latDiNp~A~~~Tl~TA~~n~~~~~~V~tdl~~~l~----~~~VDvLvfNP 118 (209)
T KOG3191|consen 43 NPEICLEIGCGSGVVSTFLASVIGPQALYLATDINPEALEATLETARCNRVHIDVVRTDLLSGLR----NESVDVLVFNP 118 (209)
T ss_pred CceeEEEecCCcchHHHHHHHhcCCCceEEEecCCHHHHHHHHHHHHhcCCccceeehhHHhhhc----cCCccEEEECC
Confidence 3678999999999999999999988888999999999988888888766 568899999866532 37999999999
Q ss_pred CC------h-----------------hHHHHHHHHHhccCCCCcEEEEEEcccccCCCCchhhhHHHHHHHHHHCCCcEe
Q 021911 222 AQ------P-----------------DQARILALNASYFLKAGGHFVISIKANCIDSTVPAEAVFQSEVKKLQQDQFKPF 278 (305)
Q Consensus 222 ~~------~-----------------~~~~~l~~~a~~~LkpGG~lv~s~~~~~i~~~~~~~~v~~~~~~~l~~~Gf~~~ 278 (305)
|. + +-...|...+-.+|.|.|.|++.+- ... .+.++ ++.++..||...
T Consensus 119 PYVpt~~~~i~~~~i~~a~aGG~~Gr~v~d~ll~~v~~iLSp~Gv~Ylv~~----~~N-~p~ei----~k~l~~~g~~~~ 189 (209)
T KOG3191|consen 119 PYVPTSDEEIGDEGIASAWAGGKDGREVTDRLLPQVPDILSPRGVFYLVAL----RAN-KPKEI----LKILEKKGYGVR 189 (209)
T ss_pred CcCcCCcccchhHHHHHHHhcCcchHHHHHHHHhhhhhhcCcCceEEeeeh----hhc-CHHHH----HHHHhhccccee
Confidence 81 1 1122233367788999999999871 111 12222 455677788765
Q ss_pred EEe
Q 021911 279 EQV 281 (305)
Q Consensus 279 e~~ 281 (305)
...
T Consensus 190 ~~~ 192 (209)
T KOG3191|consen 190 IAM 192 (209)
T ss_pred EEE
Confidence 443
|
|
| >COG0742 N6-adenine-specific methylase [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=98.92 E-value=1.6e-08 Score=85.93 Aligned_cols=124 Identities=23% Similarity=0.165 Sum_probs=86.5
Q ss_pred CchhhHHHHHHHccccccCCCCCCEEEEEecCCCccHHHHHhhhCCCcEEEEEeCChHHHHHHHHHHHcC---CCeEEEE
Q 021911 122 NPFRSKLAAAVLGGVDNIWIKPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKR---TNVIPII 198 (305)
Q Consensus 122 ~~~~s~l~a~ll~~l~~~~~~~g~~VLDlG~G~G~~t~~la~~~~~~~~V~avD~s~~~~~~l~~~a~~~---~nI~~~~ 198 (305)
.|...++-..+...|..- --++.++||+.||+|...+..+++ ....|+.||.+.++...+.++.+.- .+...+.
T Consensus 23 RPT~drVREalFNil~~~-~i~g~~~LDlFAGSGaLGlEAlSR--GA~~~~~vE~~~~a~~~l~~N~~~l~~~~~~~~~~ 99 (187)
T COG0742 23 RPTTDRVREALFNILAPD-EIEGARVLDLFAGSGALGLEALSR--GAARVVFVEKDRKAVKILKENLKALGLEGEARVLR 99 (187)
T ss_pred CCCchHHHHHHHHhcccc-ccCCCEEEEecCCccHhHHHHHhC--CCceEEEEecCHHHHHHHHHHHHHhCCccceEEEe
Confidence 344555555555544410 246899999999999999999988 4568999999997777666665543 5788888
Q ss_pred ccCCCCcccccCCCcEeEEEEeCCChh-----HHHHHHHHHhccCCCCcEEEEEE
Q 021911 199 EDARHPAKYRMLVGMVDVIFSDVAQPD-----QARILALNASYFLKAGGHFVISI 248 (305)
Q Consensus 199 ~D~~~~~~~~~~~~~fD~V~~d~~~~~-----~~~~l~~~a~~~LkpGG~lv~s~ 248 (305)
.|+...........+||+|++|+|... +..++...-..+|+|++.+++.+
T Consensus 100 ~da~~~L~~~~~~~~FDlVflDPPy~~~l~~~~~~~~~~~~~~~L~~~~~iv~E~ 154 (187)
T COG0742 100 NDALRALKQLGTREPFDLVFLDPPYAKGLLDKELALLLLEENGWLKPGALIVVEH 154 (187)
T ss_pred ecHHHHHHhcCCCCcccEEEeCCCCccchhhHHHHHHHHHhcCCcCCCcEEEEEe
Confidence 888743222111235999999999431 23333334678899999999987
|
|
| >PLN02589 caffeoyl-CoA O-methyltransferase | Back alignment and domain information |
|---|
Probab=98.91 E-value=8.2e-09 Score=92.25 Aligned_cols=106 Identities=13% Similarity=0.132 Sum_probs=82.2
Q ss_pred CCCCCEEEEEecCCCccHHHHHhhhCCCcEEEEEeCChHHHHHHHHHHHcC---CCeEEEEccCCCCccccc----CCCc
Q 021911 141 IKPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKR---TNVIPIIEDARHPAKYRM----LVGM 213 (305)
Q Consensus 141 ~~~g~~VLDlG~G~G~~t~~la~~~~~~~~V~avD~s~~~~~~l~~~a~~~---~nI~~~~~D~~~~~~~~~----~~~~ 213 (305)
.....+|||||++.|..++++|..+.+.++|+++|.++.....+.+..++. .+|++++.|+.+..+... ..++
T Consensus 77 ~~~ak~iLEiGT~~GySal~la~al~~~g~v~tiE~~~~~~~~Ar~~~~~ag~~~~I~~~~G~a~e~L~~l~~~~~~~~~ 156 (247)
T PLN02589 77 LINAKNTMEIGVYTGYSLLATALALPEDGKILAMDINRENYELGLPVIQKAGVAHKIDFREGPALPVLDQMIEDGKYHGT 156 (247)
T ss_pred HhCCCEEEEEeChhhHHHHHHHhhCCCCCEEEEEeCCHHHHHHHHHHHHHCCCCCceEEEeccHHHHHHHHHhccccCCc
Confidence 344579999999999999999998877899999999996655544444433 689999999866532210 1268
Q ss_pred EeEEEEeCCChhHHHHHHHHHhccCCCCcEEEEE
Q 021911 214 VDVIFSDVAQPDQARILALNASYFLKAGGHFVIS 247 (305)
Q Consensus 214 fD~V~~d~~~~~~~~~l~~~a~~~LkpGG~lv~s 247 (305)
||+||.|..-......+. .+.++|+|||.|++-
T Consensus 157 fD~iFiDadK~~Y~~y~~-~~l~ll~~GGviv~D 189 (247)
T PLN02589 157 FDFIFVDADKDNYINYHK-RLIDLVKVGGVIGYD 189 (247)
T ss_pred ccEEEecCCHHHhHHHHH-HHHHhcCCCeEEEEc
Confidence 999999999666666666 778999999998874
|
|
| >PLN02823 spermine synthase | Back alignment and domain information |
|---|
Probab=98.90 E-value=9.1e-08 Score=89.27 Aligned_cols=149 Identities=21% Similarity=0.185 Sum_probs=95.2
Q ss_pred CCEEEEEecCCCccHHHHHhhhCCCcEEEEEeCChHHHHHHHHHHHc------CCCeEEEEccCCCCcccccCCCcEeEE
Q 021911 144 GARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKK------RTNVIPIIEDARHPAKYRMLVGMVDVI 217 (305)
Q Consensus 144 g~~VLDlG~G~G~~t~~la~~~~~~~~V~avD~s~~~~~~l~~~a~~------~~nI~~~~~D~~~~~~~~~~~~~fD~V 217 (305)
..+||.||+|.|..+..+++.. +..+|++||+++..++-+.+.... .+++++++.|+...... ...+||+|
T Consensus 104 pk~VLiiGgG~G~~~re~l~~~-~~~~v~~VEiD~~vv~lar~~~~~~~~~~~dprv~v~~~Da~~~L~~--~~~~yDvI 180 (336)
T PLN02823 104 PKTVFIMGGGEGSTAREVLRHK-TVEKVVMCDIDQEVVDFCRKHLTVNREAFCDKRLELIINDARAELEK--RDEKFDVI 180 (336)
T ss_pred CCEEEEECCCchHHHHHHHhCC-CCCeEEEEECCHHHHHHHHHhcccccccccCCceEEEEChhHHHHhh--CCCCccEE
Confidence 4799999999999999888753 345899999999444333332211 26799999999876432 24689999
Q ss_pred EEeCCChh---------HHHHHHHHHhccCCCCcEEEEEEcccccCCCCchhhhHHHHHHHHHHCCCcEeEEe--ecCCC
Q 021911 218 FSDVAQPD---------QARILALNASYFLKAGGHFVISIKANCIDSTVPAEAVFQSEVKKLQQDQFKPFEQV--TLEPF 286 (305)
Q Consensus 218 ~~d~~~~~---------~~~~l~~~a~~~LkpGG~lv~s~~~~~i~~~~~~~~v~~~~~~~l~~~Gf~~~e~~--~l~p~ 286 (305)
++|.+.|. ..+.+...+.+.|+|+|.|++.. .+... ......+......|++. |...... .+..|
T Consensus 181 i~D~~dp~~~~~~~~Lyt~eF~~~~~~~~L~p~Gvlv~q~--~s~~~-~~~~~~~~~i~~tl~~v-F~~v~~y~~~vPsf 256 (336)
T PLN02823 181 IGDLADPVEGGPCYQLYTKSFYERIVKPKLNPGGIFVTQA--GPAGI-LTHKEVFSSIYNTLRQV-FKYVVPYTAHVPSF 256 (336)
T ss_pred EecCCCccccCcchhhccHHHHHHHHHHhcCCCcEEEEec--cCcch-hccHHHHHHHHHHHHHh-CCCEEEEEeecCCC
Confidence 99975431 22334226789999999988754 12111 11123445556666655 6544332 33445
Q ss_pred CCceEEEEEEEcC
Q 021911 287 ERDHACVVGGYRM 299 (305)
Q Consensus 287 ~~~~~~vv~~~~~ 299 (305)
...+.+++|.+..
T Consensus 257 ~~~w~f~~aS~~~ 269 (336)
T PLN02823 257 ADTWGWVMASDHP 269 (336)
T ss_pred CCceEEEEEeCCc
Confidence 4456778887653
|
|
| >PF01170 UPF0020: Putative RNA methylase family UPF0020; InterPro: IPR000241 This domain is probably a methylase | Back alignment and domain information |
|---|
Probab=98.89 E-value=1.3e-08 Score=86.90 Aligned_cols=111 Identities=24% Similarity=0.196 Sum_probs=74.3
Q ss_pred chhhHHHHHHHccccccCCCCCCEEEEEecCCCccHHHHHhhhCCCc--------EEEEEeCChHHHHHHHHHHHcC---
Q 021911 123 PFRSKLAAAVLGGVDNIWIKPGARVLYLGAASGTTVSHVSDIVGPNG--------VVYAVEFSHRSGRDLVNMAKKR--- 191 (305)
Q Consensus 123 ~~~s~l~a~ll~~l~~~~~~~g~~VLDlG~G~G~~t~~la~~~~~~~--------~V~avD~s~~~~~~l~~~a~~~--- 191 (305)
+.+..+++.++... ..+++..|||..||+|++.+..|....... .++++|+++++++.+.++++..
T Consensus 11 ~L~~~lA~~ll~la---~~~~~~~vlDP~CGsGtiliEaa~~~~~~~~~~~~~~~~~~g~Di~~~~v~~a~~N~~~ag~~ 87 (179)
T PF01170_consen 11 PLRPTLAAALLNLA---GWRPGDVVLDPFCGSGTILIEAALMGANIPPLNDINELKIIGSDIDPKAVRGARENLKAAGVE 87 (179)
T ss_dssp SS-HHHHHHHHHHT---T--TTS-EEETT-TTSHHHHHHHHHHTTTSTTTH-CH--EEEEESSHHHHHHHHHHHHHTT-C
T ss_pred CCCHHHHHHHHHHh---CCCCCCEEeecCCCCCHHHHHHHHHhhCcccccccccccEEecCCCHHHHHHHHHHHHhcccC
Confidence 45667777776432 467889999999999999999887653222 3899999998877776666554
Q ss_pred CCeEEEEccCCCCcccccCCCcEeEEEEeCCC----------hh-HHHHHHHHHhccCCC
Q 021911 192 TNVIPIIEDARHPAKYRMLVGMVDVIFSDVAQ----------PD-QARILALNASYFLKA 240 (305)
Q Consensus 192 ~nI~~~~~D~~~~~~~~~~~~~fD~V~~d~~~----------~~-~~~~l~~~a~~~Lkp 240 (305)
..|.+.+.|+++.+. ..+.+|+|++|+|. .. ...++. ++.++|++
T Consensus 88 ~~i~~~~~D~~~l~~---~~~~~d~IvtnPPyG~r~~~~~~~~~ly~~~~~-~~~~~l~~ 143 (179)
T PF01170_consen 88 DYIDFIQWDARELPL---PDGSVDAIVTNPPYGRRLGSKKDLEKLYRQFLR-ELKRVLKP 143 (179)
T ss_dssp GGEEEEE--GGGGGG---TTSBSCEEEEE--STTSHCHHHHHHHHHHHHHH-HHHCHSTT
T ss_pred CceEEEecchhhccc---ccCCCCEEEECcchhhhccCHHHHHHHHHHHHH-HHHHHCCC
Confidence 458899999988862 35799999999992 11 223344 78899999
|
It is associated with the THUMP domain that also occurs with RNA modification domains [].; PDB: 3LDU_A 3LDG_A 3K0B_A 3V8V_B 3V97_A 3TLJ_A 3TM5_B 3TM4_A 3TMA_A. |
| >COG3963 Phospholipid N-methyltransferase [Lipid metabolism] | Back alignment and domain information |
|---|
Probab=98.89 E-value=2.1e-08 Score=82.93 Aligned_cols=119 Identities=24% Similarity=0.196 Sum_probs=90.7
Q ss_pred CchhhHHHHHHHccccccCCCCCCEEEEEecCCCccHHHHHhhhCCCcEEEEEeCChHHHHHHHHHHHcC-CCeEEEEcc
Q 021911 122 NPFRSKLAAAVLGGVDNIWIKPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKR-TNVIPIIED 200 (305)
Q Consensus 122 ~~~~s~l~a~ll~~l~~~~~~~g~~VLDlG~G~G~~t~~la~~~~~~~~V~avD~s~~~~~~l~~~a~~~-~nI~~~~~D 200 (305)
-|.++.+++.++..+ ++..+.-|||+|.|+|.+|..+.++--+...++++|.|+ ++.....+. +.+.++..|
T Consensus 30 ~PsSs~lA~~M~s~I---~pesglpVlElGPGTGV~TkaIL~~gv~~~~L~~iE~~~----dF~~~L~~~~p~~~ii~gd 102 (194)
T COG3963 30 LPSSSILARKMASVI---DPESGLPVLELGPGTGVITKAILSRGVRPESLTAIEYSP----DFVCHLNQLYPGVNIINGD 102 (194)
T ss_pred cCCcHHHHHHHHhcc---CcccCCeeEEEcCCccHhHHHHHhcCCCccceEEEEeCH----HHHHHHHHhCCCccccccc
Confidence 355777888886533 577788999999999999999998755666899999999 555554443 677889999
Q ss_pred CCCCccc--ccCCCcEeEEEEeCC----Ch-hHHHHHHHHHhccCCCCcEEEEEE
Q 021911 201 ARHPAKY--RMLVGMVDVIFSDVA----QP-DQARILALNASYFLKAGGHFVISI 248 (305)
Q Consensus 201 ~~~~~~~--~~~~~~fD~V~~d~~----~~-~~~~~l~~~a~~~LkpGG~lv~s~ 248 (305)
+.+...+ ....+.||.|+|.+| .+ ...+++. .+...|.+||.|+-.+
T Consensus 103 a~~l~~~l~e~~gq~~D~viS~lPll~~P~~~~iaile-~~~~rl~~gg~lvqft 156 (194)
T COG3963 103 AFDLRTTLGEHKGQFFDSVISGLPLLNFPMHRRIAILE-SLLYRLPAGGPLVQFT 156 (194)
T ss_pred hhhHHHHHhhcCCCeeeeEEeccccccCcHHHHHHHHH-HHHHhcCCCCeEEEEE
Confidence 8777522 234578999999887 22 3445555 8999999999998877
|
|
| >PF03291 Pox_MCEL: mRNA capping enzyme; InterPro: IPR004971 This is a family of viral mRNA capping enzymes | Back alignment and domain information |
|---|
Probab=98.87 E-value=2.8e-08 Score=92.56 Aligned_cols=123 Identities=21% Similarity=0.179 Sum_probs=82.1
Q ss_pred chhhHHHHHHHccccccCCCCCCEEEEEecCCCccHHHHHhhhCCCcEEEEEeCChHHHHHHHHHHHc--------C---
Q 021911 123 PFRSKLAAAVLGGVDNIWIKPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKK--------R--- 191 (305)
Q Consensus 123 ~~~s~l~a~ll~~l~~~~~~~g~~VLDlG~G~G~~t~~la~~~~~~~~V~avD~s~~~~~~l~~~a~~--------~--- 191 (305)
+..+.|....+..+. ...++.+|||||||-|.-+.-.... .-..++++|++..++.++.+..+. .
T Consensus 44 wvKs~LI~~~~~~~~--~~~~~~~VLDl~CGkGGDL~Kw~~~--~i~~~vg~Dis~~si~ea~~Ry~~~~~~~~~~~~~~ 119 (331)
T PF03291_consen 44 WVKSVLIQKYAKKVK--QNRPGLTVLDLCCGKGGDLQKWQKA--KIKHYVGIDISEESIEEARERYKQLKKRNNSKQYRF 119 (331)
T ss_dssp HHHHHHHHHHCHCCC--CTTTT-EEEEET-TTTTTHHHHHHT--T-SEEEEEES-HHHHHHHHHHHHHHHTSTT-HTSEE
T ss_pred HHHHHHHHHHHHhhh--ccCCCCeEEEecCCCchhHHHHHhc--CCCEEEEEeCCHHHHHHHHHHHHHhccccccccccc
Confidence 344555555543222 1127899999999999987777665 345899999999888887777621 1
Q ss_pred -CCeEEEEccCCCCccc-ccCC--CcEeEEEEeCC------ChhHHHHHHHHHhccCCCCcEEEEEEc
Q 021911 192 -TNVIPIIEDARHPAKY-RMLV--GMVDVIFSDVA------QPDQARILALNASYFLKAGGHFVISIK 249 (305)
Q Consensus 192 -~nI~~~~~D~~~~~~~-~~~~--~~fD~V~~d~~------~~~~~~~l~~~a~~~LkpGG~lv~s~~ 249 (305)
-...++..|....... ...+ .+||+|-|..+ ...+++.+..++...|+|||+|+.+++
T Consensus 120 ~f~a~f~~~D~f~~~l~~~~~~~~~~FDvVScQFalHY~Fese~~ar~~l~Nvs~~Lk~GG~FIgT~~ 187 (331)
T PF03291_consen 120 DFIAEFIAADCFSESLREKLPPRSRKFDVVSCQFALHYAFESEEKARQFLKNVSSLLKPGGYFIGTTP 187 (331)
T ss_dssp CCEEEEEESTTCCSHHHCTSSSTTS-EEEEEEES-GGGGGSSHHHHHHHHHHHHHTEEEEEEEEEEEE
T ss_pred cchhheeccccccchhhhhccccCCCcceeehHHHHHHhcCCHHHHHHHHHHHHHhcCCCCEEEEEec
Confidence 2356788887654321 1122 49999999887 456777666699999999999999983
|
The enzyme catalyses the first two reactions in the mRNA cap formation pathway. It is a heterodimer consisting of a large and small subunit. This entry is the large subunit. ; GO: 0006370 mRNA capping; PDB: 3EPP_A 3BGV_C 2VDW_C 1RI5_A 1RI3_A 1RI1_A 1Z3C_A 1RI2_A 2HV9_A 1RI4_A. |
| >PLN02585 magnesium protoporphyrin IX methyltransferase | Back alignment and domain information |
|---|
Probab=98.86 E-value=6.7e-08 Score=89.47 Aligned_cols=94 Identities=18% Similarity=0.131 Sum_probs=62.7
Q ss_pred CCCEEEEEecCCCccHHHHHhhhCCCcEEEEEeCChHHHHHHHHHHHcC-------CCeEEEEccCCCCcccccCCCcEe
Q 021911 143 PGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKR-------TNVIPIIEDARHPAKYRMLVGMVD 215 (305)
Q Consensus 143 ~g~~VLDlG~G~G~~t~~la~~~~~~~~V~avD~s~~~~~~l~~~a~~~-------~nI~~~~~D~~~~~~~~~~~~~fD 215 (305)
++.+|||+|||+|.++..+++. ..+|+++|+|+.+++...+.++.. .++.+.+.|+... .++||
T Consensus 144 ~~~~VLDlGcGtG~~a~~la~~---g~~V~gvD~S~~ml~~A~~~~~~~~~~~~~~~~~~f~~~Dl~~l------~~~fD 214 (315)
T PLN02585 144 AGVTVCDAGCGTGSLAIPLALE---GAIVSASDISAAMVAEAERRAKEALAALPPEVLPKFEANDLESL------SGKYD 214 (315)
T ss_pred CCCEEEEecCCCCHHHHHHHHC---CCEEEEEECCHHHHHHHHHHHHhcccccccccceEEEEcchhhc------CCCcC
Confidence 5789999999999999999986 258999999996655555544332 3567888887543 36899
Q ss_pred EEEEeCC-----ChhHHHHHHHHHhccCCCCcEEEEEE
Q 021911 216 VIFSDVA-----QPDQARILALNASYFLKAGGHFVISI 248 (305)
Q Consensus 216 ~V~~d~~-----~~~~~~~l~~~a~~~LkpGG~lv~s~ 248 (305)
+|+|... ......++. .+.. +.+++ ++++.
T Consensus 215 ~Vv~~~vL~H~p~~~~~~ll~-~l~~-l~~g~-liIs~ 249 (315)
T PLN02585 215 TVTCLDVLIHYPQDKADGMIA-HLAS-LAEKR-LIISF 249 (315)
T ss_pred EEEEcCEEEecCHHHHHHHHH-HHHh-hcCCE-EEEEe
Confidence 9987433 222333443 4443 45554 45543
|
|
| >PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=98.83 E-value=2.8e-08 Score=97.77 Aligned_cols=125 Identities=18% Similarity=0.216 Sum_probs=95.0
Q ss_pred CCCCEEEEEecCCCccHHHHHhhhCCCcEEEEEeCChHHHHHHHHHHHcC--CCeEEEEccCCCCcccccCCCcEeEEEE
Q 021911 142 KPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKR--TNVIPIIEDARHPAKYRMLVGMVDVIFS 219 (305)
Q Consensus 142 ~~g~~VLDlG~G~G~~t~~la~~~~~~~~V~avD~s~~~~~~l~~~a~~~--~nI~~~~~D~~~~~~~~~~~~~fD~V~~ 219 (305)
.....+||||||.|.++.++|... |+..+++||++...+..++..+.+. .|+.++..|+...... +...++|.|++
T Consensus 346 ~~~p~~lEIG~G~G~~~~~~A~~~-p~~~~iGiE~~~~~~~~~~~~~~~~~l~N~~~~~~~~~~~~~~-~~~~sv~~i~i 423 (506)
T PRK01544 346 EKRKVFLEIGFGMGEHFINQAKMN-PDALFIGVEVYLNGVANVLKLAGEQNITNFLLFPNNLDLILND-LPNNSLDGIYI 423 (506)
T ss_pred CCCceEEEECCCchHHHHHHHHhC-CCCCEEEEEeeHHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHh-cCcccccEEEE
Confidence 446799999999999999999985 7889999999998877777776554 6898888887544322 34578999999
Q ss_pred eCCChh-----------HHHHHHHHHhccCCCCcEEEEEEcccccCCCCchhhhHHHHHHHHHHCC-CcEe
Q 021911 220 DVAQPD-----------QARILALNASYFLKAGGHFVISIKANCIDSTVPAEAVFQSEVKKLQQDQ-FKPF 278 (305)
Q Consensus 220 d~~~~~-----------~~~~l~~~a~~~LkpGG~lv~s~~~~~i~~~~~~~~v~~~~~~~l~~~G-f~~~ 278 (305)
+.|.|+ +...+. ..++.|||||.|.+.| +....+...++.+.+.+ |+..
T Consensus 424 ~FPDPWpKkrh~krRl~~~~fl~-~~~~~Lk~gG~i~~~T---------D~~~y~~~~~~~~~~~~~f~~~ 484 (506)
T PRK01544 424 LFPDPWIKNKQKKKRIFNKERLK-ILQDKLKDNGNLVFAS---------DIENYFYEAIELIQQNGNFEII 484 (506)
T ss_pred ECCCCCCCCCCccccccCHHHHH-HHHHhcCCCCEEEEEc---------CCHHHHHHHHHHHHhCCCeEec
Confidence 999654 555565 7889999999999998 23444444456665554 6654
|
|
| >KOG1661 consensus Protein-L-isoaspartate(D-aspartate) O-methyltransferase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.83 E-value=1.5e-08 Score=86.66 Aligned_cols=110 Identities=27% Similarity=0.408 Sum_probs=82.3
Q ss_pred HHHHHHHccccccCCCCCCEEEEEecCCCccHHHHHhhhCCCcE-EEEEeCChHHHHHHHHHHHcC--------------
Q 021911 127 KLAAAVLGGVDNIWIKPGARVLYLGAASGTTVSHVSDIVGPNGV-VYAVEFSHRSGRDLVNMAKKR-------------- 191 (305)
Q Consensus 127 ~l~a~ll~~l~~~~~~~g~~VLDlG~G~G~~t~~la~~~~~~~~-V~avD~s~~~~~~l~~~a~~~-------------- 191 (305)
.+.+.+++.|+. +++|+.+.||+|+|+|+++..++.+++..+. +++||.-+ ++++.++++
T Consensus 67 ~mha~~le~L~~-~L~pG~s~LdvGsGSGYLt~~~~~mvg~~g~~~~GIEh~~----eLVe~Sk~nl~k~i~~~e~~~~~ 141 (237)
T KOG1661|consen 67 HMHATALEYLDD-HLQPGASFLDVGSGSGYLTACFARMVGATGGNVHGIEHIP----ELVEYSKKNLDKDITTSESSSKL 141 (237)
T ss_pred HHHHHHHHHHHH-hhccCcceeecCCCccHHHHHHHHHhcCCCccccchhhhH----HHHHHHHHHHHhhccCchhhhhh
Confidence 444555555542 4889999999999999999999988887765 49999888 444444432
Q ss_pred --CCeEEEEccCCCCcccccCCCcEeEEEEeCCChhHHHHHHHHHhccCCCCcEEEEEE
Q 021911 192 --TNVIPIIEDARHPAKYRMLVGMVDVIFSDVAQPDQARILALNASYFLKAGGHFVISI 248 (305)
Q Consensus 192 --~nI~~~~~D~~~~~~~~~~~~~fD~V~~d~~~~~~~~~l~~~a~~~LkpGG~lv~s~ 248 (305)
.++.+++.|.+..... ..+||.|++-++.+...+.+. ..|+++|.|++..
T Consensus 142 ~~~~l~ivvGDgr~g~~e---~a~YDaIhvGAaa~~~pq~l~----dqL~~gGrllip~ 193 (237)
T KOG1661|consen 142 KRGELSIVVGDGRKGYAE---QAPYDAIHVGAAASELPQELL----DQLKPGGRLLIPV 193 (237)
T ss_pred ccCceEEEeCCccccCCc---cCCcceEEEccCccccHHHHH----HhhccCCeEEEee
Confidence 3577888998876543 579999999877665554343 6899999999976
|
|
| >COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.83 E-value=2.3e-09 Score=92.75 Aligned_cols=135 Identities=19% Similarity=0.204 Sum_probs=89.3
Q ss_pred CCCCCCEEEEEecCCCccHHHHHhhhCCCcEEEEEeCChHHHHHHHHHHHcCCCe-EEEEccCCCCcccccCCCcEeEEE
Q 021911 140 WIKPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKRTNV-IPIIEDARHPAKYRMLVGMVDVIF 218 (305)
Q Consensus 140 ~~~~g~~VLDlG~G~G~~t~~la~~~~~~~~V~avD~s~~~~~~l~~~a~~~~nI-~~~~~D~~~~~~~~~~~~~fD~V~ 218 (305)
+..+-.++||||||||.+...|.++.. .+++||+|+ .|++.+.++.-- ...++|+..+... .....||+|.
T Consensus 122 ~~g~F~~~lDLGCGTGL~G~~lR~~a~---~ltGvDiS~----nMl~kA~eKg~YD~L~~Aea~~Fl~~-~~~er~DLi~ 193 (287)
T COG4976 122 DLGPFRRMLDLGCGTGLTGEALRDMAD---RLTGVDISE----NMLAKAHEKGLYDTLYVAEAVLFLED-LTQERFDLIV 193 (287)
T ss_pred cCCccceeeecccCcCcccHhHHHHHh---hccCCchhH----HHHHHHHhccchHHHHHHHHHHHhhh-ccCCcccchh
Confidence 445568999999999999999998864 789999999 888888776211 2334454333221 1246899998
Q ss_pred E-eCC--ChhHHHHHHHHHhccCCCCcEEEEEEcccccCC--CCchhhhHHH---H-HHHHHHCCCcEeEEeec
Q 021911 219 S-DVA--QPDQARILALNASYFLKAGGHFVISIKANCIDS--TVPAEAVFQS---E-VKKLQQDQFKPFEQVTL 283 (305)
Q Consensus 219 ~-d~~--~~~~~~~l~~~a~~~LkpGG~lv~s~~~~~i~~--~~~~~~v~~~---~-~~~l~~~Gf~~~e~~~l 283 (305)
+ |+. .-+...++. -+..+|+|||.|.+|+..-+-+. ...+...++. . ...+...||+++++.+.
T Consensus 194 AaDVl~YlG~Le~~~~-~aa~~L~~gGlfaFSvE~l~~~~~f~l~ps~RyAH~~~YVr~~l~~~Gl~~i~~~~t 266 (287)
T COG4976 194 AADVLPYLGALEGLFA-GAAGLLAPGGLFAFSVETLPDDGGFVLGPSQRYAHSESYVRALLAASGLEVIAIEDT 266 (287)
T ss_pred hhhHHHhhcchhhHHH-HHHHhcCCCceEEEEecccCCCCCeecchhhhhccchHHHHHHHHhcCceEEEeecc
Confidence 6 443 224555665 88899999999999984333222 1122222221 1 35567899999886543
|
|
| >KOG1975 consensus mRNA cap methyltransferase [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.82 E-value=2.9e-08 Score=89.95 Aligned_cols=116 Identities=22% Similarity=0.216 Sum_probs=84.3
Q ss_pred chhhHHHHHHHccccccCCCCCCEEEEEecCCCccHHHHHhhhCCCcEEEEEeCChHHHHHHHHHHHcC----C----Ce
Q 021911 123 PFRSKLAAAVLGGVDNIWIKPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKR----T----NV 194 (305)
Q Consensus 123 ~~~s~l~a~ll~~l~~~~~~~g~~VLDlG~G~G~~t~~la~~~~~~~~V~avD~s~~~~~~l~~~a~~~----~----nI 194 (305)
+..|+|.... .++++.+||||||-|.-.+-.-.. .-+.++++||++-++.++.+..+.. . .+
T Consensus 105 wIKs~LI~~y--------~~~~~~~~~LgCGKGGDLlKw~kA--gI~~~igiDIAevSI~qa~~RYrdm~~r~~~~~f~a 174 (389)
T KOG1975|consen 105 WIKSVLINLY--------TKRGDDVLDLGCGKGGDLLKWDKA--GIGEYIGIDIAEVSINQARKRYRDMKNRFKKFIFTA 174 (389)
T ss_pred HHHHHHHHHH--------hccccccceeccCCcccHhHhhhh--cccceEeeehhhccHHHHHHHHHHHHhhhhccccee
Confidence 3455555544 478899999999999988776654 3458999999987666655444321 2 47
Q ss_pred EEEEccCCCCcccc---cCCCcEeEEEEeCC------ChhHHHHHHHHHhccCCCCcEEEEEE
Q 021911 195 IPIIEDARHPAKYR---MLVGMVDVIFSDVA------QPDQARILALNASYFLKAGGHFVISI 248 (305)
Q Consensus 195 ~~~~~D~~~~~~~~---~~~~~fD~V~~d~~------~~~~~~~l~~~a~~~LkpGG~lv~s~ 248 (305)
.++.+|.+...... ..+.+||+|-|..+ ...+++++..|+...|||||+|+-++
T Consensus 175 ~f~~~Dc~~~~l~d~~e~~dp~fDivScQF~~HYaFetee~ar~~l~Nva~~LkpGG~FIgTi 237 (389)
T KOG1975|consen 175 VFIAADCFKERLMDLLEFKDPRFDIVSCQFAFHYAFETEESARIALRNVAKCLKPGGVFIGTI 237 (389)
T ss_pred EEEEeccchhHHHHhccCCCCCcceeeeeeeEeeeeccHHHHHHHHHHHHhhcCCCcEEEEec
Confidence 89999986543211 12345999998776 46788888889999999999999987
|
|
| >PRK04338 N(2),N(2)-dimethylguanosine tRNA methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.81 E-value=2.5e-08 Score=94.70 Aligned_cols=100 Identities=20% Similarity=0.082 Sum_probs=76.8
Q ss_pred CCCEEEEEecCCCccHHHHHhhhCCCcEEEEEeCChHHHHHHHHHHHcC--CCeEEEEccCCCCcccccCCCcEeEEEEe
Q 021911 143 PGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKR--TNVIPIIEDARHPAKYRMLVGMVDVIFSD 220 (305)
Q Consensus 143 ~g~~VLDlG~G~G~~t~~la~~~~~~~~V~avD~s~~~~~~l~~~a~~~--~nI~~~~~D~~~~~~~~~~~~~fD~V~~d 220 (305)
++.+|||++||+|..++.+|...+ ...|+++|+++.+++.+.++++.+ .++++++.|+...... ...||+|++|
T Consensus 57 ~~~~vLDl~aGsG~~~l~~a~~~~-~~~V~a~Din~~Av~~a~~N~~~N~~~~~~v~~~Da~~~l~~---~~~fD~V~lD 132 (382)
T PRK04338 57 PRESVLDALSASGIRGIRYALETG-VEKVTLNDINPDAVELIKKNLELNGLENEKVFNKDANALLHE---ERKFDVVDID 132 (382)
T ss_pred CCCEEEECCCcccHHHHHHHHHCC-CCEEEEEeCCHHHHHHHHHHHHHhCCCceEEEhhhHHHHHhh---cCCCCEEEEC
Confidence 357999999999999999998754 348999999998877777766654 5677888898654321 3579999999
Q ss_pred CCChhHHHHHHHHHhccCCCCcEEEEEE
Q 021911 221 VAQPDQARILALNASYFLKAGGHFVISI 248 (305)
Q Consensus 221 ~~~~~~~~~l~~~a~~~LkpGG~lv~s~ 248 (305)
++ -.....+. .+...++++|.|+++.
T Consensus 133 P~-Gs~~~~l~-~al~~~~~~gilyvSA 158 (382)
T PRK04338 133 PF-GSPAPFLD-SAIRSVKRGGLLCVTA 158 (382)
T ss_pred CC-CCcHHHHH-HHHHHhcCCCEEEEEe
Confidence 87 23344554 6677899999999984
|
|
| >KOG3010 consensus Methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.81 E-value=2.6e-08 Score=87.02 Aligned_cols=109 Identities=18% Similarity=0.180 Sum_probs=75.7
Q ss_pred hhHHHHHHHccccccCCCCCC-EEEEEecCCCccHHHHHhhhCCCcEEEEEeCChHHHHHHHHHHHcCCCeEEEEccCCC
Q 021911 125 RSKLAAAVLGGVDNIWIKPGA-RVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKRTNVIPIIEDARH 203 (305)
Q Consensus 125 ~s~l~a~ll~~l~~~~~~~g~-~VLDlG~G~G~~t~~la~~~~~~~~V~avD~s~~~~~~l~~~a~~~~nI~~~~~D~~~ 203 (305)
.+.+...+. ...++. .++|+|||+|..+..+|.++. +|+|+|+|+ .|++.+++.+++.....-.+.
T Consensus 20 Ptdw~~~ia------~~~~~h~~a~DvG~G~Gqa~~~iae~~k---~VIatD~s~----~mL~~a~k~~~~~y~~t~~~m 86 (261)
T KOG3010|consen 20 PTDWFKKIA------SRTEGHRLAWDVGTGNGQAARGIAEHYK---EVIATDVSE----AMLKVAKKHPPVTYCHTPSTM 86 (261)
T ss_pred cHHHHHHHH------hhCCCcceEEEeccCCCcchHHHHHhhh---hheeecCCH----HHHHHhhcCCCcccccCCccc
Confidence 344555554 233433 899999999999999999864 899999999 889999988766654432211
Q ss_pred C--cccccC--CCcEeEEEEeCC--ChhHHHHHHHHHhccCCCCc-EEEEE
Q 021911 204 P--AKYRML--VGMVDVIFSDVA--QPDQARILALNASYFLKAGG-HFVIS 247 (305)
Q Consensus 204 ~--~~~~~~--~~~fD~V~~d~~--~~~~~~~l~~~a~~~LkpGG-~lv~s 247 (305)
. +....+ ++++|+|+|--+ .-+..+.+. ++.++||+.| .+.+-
T Consensus 87 s~~~~v~L~g~e~SVDlI~~Aqa~HWFdle~fy~-~~~rvLRk~Gg~iavW 136 (261)
T KOG3010|consen 87 SSDEMVDLLGGEESVDLITAAQAVHWFDLERFYK-EAYRVLRKDGGLIAVW 136 (261)
T ss_pred cccccccccCCCcceeeehhhhhHHhhchHHHHH-HHHHHcCCCCCEEEEE
Confidence 1 111112 579999997544 446677776 9999999888 44443
|
|
| >PF05148 Methyltransf_8: Hypothetical methyltransferase; InterPro: IPR007823 This family consists of uncharacterised eukaryotic proteins which are related to S-adenosyl-L-methionine-dependent methyltransferases | Back alignment and domain information |
|---|
Probab=98.81 E-value=7.2e-08 Score=82.96 Aligned_cols=115 Identities=15% Similarity=0.094 Sum_probs=70.2
Q ss_pred CCCCCEEEEEecCCCccHHHHHhhhCCCcEEEEEeCChHHHHHHHHHHHcCCCeEEEEccCCCCcccccCCCcEeEEEEe
Q 021911 141 IKPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKRTNVIPIIEDARHPAKYRMLVGMVDVIFSD 220 (305)
Q Consensus 141 ~~~g~~VLDlG~G~G~~t~~la~~~~~~~~V~avD~s~~~~~~l~~~a~~~~nI~~~~~D~~~~~~~~~~~~~fD~V~~d 220 (305)
..+...|-|+|||.+..+..+. ..-+|++.|+.. .++ .++.+|+.+.+. .+.++|+++..
T Consensus 70 ~~~~~viaD~GCGdA~la~~~~----~~~~V~SfDLva-----------~n~--~Vtacdia~vPL---~~~svDv~Vfc 129 (219)
T PF05148_consen 70 RPKSLVIADFGCGDAKLAKAVP----NKHKVHSFDLVA-----------PNP--RVTACDIANVPL---EDESVDVAVFC 129 (219)
T ss_dssp S-TTS-EEEES-TT-HHHHH------S---EEEEESS------------SST--TEEES-TTS-S-----TT-EEEEEEE
T ss_pred cCCCEEEEECCCchHHHHHhcc----cCceEEEeeccC-----------CCC--CEEEecCccCcC---CCCceeEEEEE
Confidence 3446799999999987664443 334799999976 123 357799987763 36899999987
Q ss_pred CC--ChhHHHHHHHHHhccCCCCcEEEEEEcccccCCCCchhhhHHHHHHHHHHCCCcEeEEeec
Q 021911 221 VA--QPDQARILALNASYFLKAGGHFVISIKANCIDSTVPAEAVFQSEVKKLQQDQFKPFEQVTL 283 (305)
Q Consensus 221 ~~--~~~~~~~l~~~a~~~LkpGG~lv~s~~~~~i~~~~~~~~v~~~~~~~l~~~Gf~~~e~~~l 283 (305)
.+ -.+....+. +|.++|||+|.|.|.....-+. . ...-++.++..||++...-..
T Consensus 130 LSLMGTn~~~fi~-EA~RvLK~~G~L~IAEV~SRf~----~---~~~F~~~~~~~GF~~~~~d~~ 186 (219)
T PF05148_consen 130 LSLMGTNWPDFIR-EANRVLKPGGILKIAEVKSRFE----N---VKQFIKALKKLGFKLKSKDES 186 (219)
T ss_dssp S---SS-HHHHHH-HHHHHEEEEEEEEEEEEGGG-S--------HHHHHHHHHCTTEEEEEEE--
T ss_pred hhhhCCCcHHHHH-HHHheeccCcEEEEEEecccCc----C---HHHHHHHHHHCCCeEEecccC
Confidence 77 567777887 9999999999999986321111 1 123356677889999876433
|
; GO: 0008168 methyltransferase activity; PDB: 2ZFU_B. |
| >PF06080 DUF938: Protein of unknown function (DUF938); InterPro: IPR010342 This family consists of several hypothetical proteins from both prokaryotes and eukaryotes | Back alignment and domain information |
|---|
Probab=98.81 E-value=1.1e-07 Score=82.09 Aligned_cols=151 Identities=19% Similarity=0.188 Sum_probs=93.2
Q ss_pred CCCCCEEEEEecCCCccHHHHHhhhCCCcEEEEEeCChHHHHHHHHHHHcC--CCe-EEEEccCCCCcccc-----cCCC
Q 021911 141 IKPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKR--TNV-IPIIEDARHPAKYR-----MLVG 212 (305)
Q Consensus 141 ~~~g~~VLDlG~G~G~~t~~la~~~~~~~~V~avD~s~~~~~~l~~~a~~~--~nI-~~~~~D~~~~~~~~-----~~~~ 212 (305)
...+.+||||+||||--+.++|..+ |..+-.-.|+++.....+....... +|+ .++..|++...... ....
T Consensus 23 ~~~~~~vLEiaSGtGqHa~~FA~~l-P~l~WqPSD~~~~~~~sI~a~~~~~~~~Nv~~P~~lDv~~~~w~~~~~~~~~~~ 101 (204)
T PF06080_consen 23 PDSGTRVLEIASGTGQHAVYFAQAL-PHLTWQPSDPDDNLRPSIRAWIAEAGLPNVRPPLALDVSAPPWPWELPAPLSPE 101 (204)
T ss_pred CccCceEEEEcCCccHHHHHHHHHC-CCCEEcCCCCChHHHhhHHHHHHhcCCcccCCCeEeecCCCCCccccccccCCC
Confidence 3344469999999999999999998 5666777798886544444444332 454 46778887763221 1246
Q ss_pred cEeEEEE-eCC---ChhHHHHHHHHHhccCCCCcEEEEEEcccccCC-CCchhhhH---------------HHHHHHH-H
Q 021911 213 MVDVIFS-DVA---QPDQARILALNASYFLKAGGHFVISIKANCIDS-TVPAEAVF---------------QSEVKKL-Q 271 (305)
Q Consensus 213 ~fD~V~~-d~~---~~~~~~~l~~~a~~~LkpGG~lv~s~~~~~i~~-~~~~~~v~---------------~~~~~~l-~ 271 (305)
+||+|++ |+. .....+.|...+.++|++||.|++.=+...-.. +.+....| .+++..+ +
T Consensus 102 ~~D~i~~~N~lHI~p~~~~~~lf~~a~~~L~~gG~L~~YGPF~~~G~~ts~SN~~FD~sLr~rdp~~GiRD~e~v~~lA~ 181 (204)
T PF06080_consen 102 SFDAIFCINMLHISPWSAVEGLFAGAARLLKPGGLLFLYGPFNRDGKFTSESNAAFDASLRSRDPEWGIRDIEDVEALAA 181 (204)
T ss_pred CcceeeehhHHHhcCHHHHHHHHHHHHHhCCCCCEEEEeCCcccCCEeCCcHHHHHHHHHhcCCCCcCccCHHHHHHHHH
Confidence 8999998 333 233444444489999999999998653222110 00111111 1224444 7
Q ss_pred HCCCcEeEEeecCCCCCceEEEEE
Q 021911 272 QDQFKPFEQVTLEPFERDHACVVG 295 (305)
Q Consensus 272 ~~Gf~~~e~~~l~p~~~~~~~vv~ 295 (305)
++|++.++.+++... ..++|-
T Consensus 182 ~~GL~l~~~~~MPAN---N~~Lvf 202 (204)
T PF06080_consen 182 AHGLELEEDIDMPAN---NLLLVF 202 (204)
T ss_pred HCCCccCcccccCCC---CeEEEE
Confidence 789998888766443 444443
|
The function of this family is unknown. |
| >COG1189 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.79 E-value=1.7e-07 Score=82.04 Aligned_cols=154 Identities=19% Similarity=0.203 Sum_probs=108.9
Q ss_pred CchhhHHHHHHHccccccCCC-CCCEEEEEecCCCccHHHHHhhhCCCcEEEEEeCChHHHHHHHHHHHcCCCeE-EEEc
Q 021911 122 NPFRSKLAAAVLGGVDNIWIK-PGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKRTNVI-PIIE 199 (305)
Q Consensus 122 ~~~~s~l~a~ll~~l~~~~~~-~g~~VLDlG~G~G~~t~~la~~~~~~~~V~avD~s~~~~~~l~~~a~~~~nI~-~~~~ 199 (305)
.+|.|+-+-.+...|+.+.+. ++..+||+|+.||.||..+.+. ....|||||+... ++-...+..++|. +...
T Consensus 57 ~~yVSRG~~KL~~ale~F~l~~k~kv~LDiGsSTGGFTd~lLq~--gAk~VyavDVG~~---Ql~~kLR~d~rV~~~E~t 131 (245)
T COG1189 57 QPYVSRGGLKLEKALEEFELDVKGKVVLDIGSSTGGFTDVLLQR--GAKHVYAVDVGYG---QLHWKLRNDPRVIVLERT 131 (245)
T ss_pred cCccccHHHHHHHHHHhcCcCCCCCEEEEecCCCccHHHHHHHc--CCcEEEEEEccCC---ccCHhHhcCCcEEEEecC
Confidence 456777777777777766555 4789999999999999999988 4569999999862 3333344445554 4455
Q ss_pred cCCCCcccccCCCcEeEEEEeCCChhHHHHHHHHHhccCCCCcEEEEEEcccc------c------CCCCchhhhHHHHH
Q 021911 200 DARHPAKYRMLVGMVDVIFSDVAQPDQARILALNASYFLKAGGHFVISIKANC------I------DSTVPAEAVFQSEV 267 (305)
Q Consensus 200 D~~~~~~~~~~~~~fD~V~~d~~~~~~~~~l~~~a~~~LkpGG~lv~s~~~~~------i------~~~~~~~~v~~~~~ 267 (305)
|++...+.. ..+..|+|++|++......+|- .+..+|+|++.++.-++... + ........+..+..
T Consensus 132 N~r~l~~~~-~~~~~d~~v~DvSFISL~~iLp-~l~~l~~~~~~~v~LvKPQFEagr~~v~kkGvv~d~~~~~~v~~~i~ 209 (245)
T COG1189 132 NVRYLTPED-FTEKPDLIVIDVSFISLKLILP-ALLLLLKDGGDLVLLVKPQFEAGREQVGKKGVVRDPKLHAEVLSKIE 209 (245)
T ss_pred ChhhCCHHH-cccCCCeEEEEeehhhHHHHHH-HHHHhcCCCceEEEEecchhhhhhhhcCcCceecCcchHHHHHHHHH
Confidence 777665443 3348899999999888888887 99999999999988775433 1 11112222344445
Q ss_pred HHHHHCCCcEeEEee
Q 021911 268 KKLQQDQFKPFEQVT 282 (305)
Q Consensus 268 ~~l~~~Gf~~~e~~~ 282 (305)
+++.+.||++.....
T Consensus 210 ~~~~~~g~~~~gl~~ 224 (245)
T COG1189 210 NFAKELGFQVKGLIK 224 (245)
T ss_pred HHHhhcCcEEeeeEc
Confidence 666788999887653
|
|
| >PRK00050 16S rRNA m(4)C1402 methyltranserfase; Provisional | Back alignment and domain information |
|---|
Probab=98.79 E-value=4.2e-08 Score=89.76 Aligned_cols=83 Identities=17% Similarity=0.142 Sum_probs=62.8
Q ss_pred CCCCCCEEEEEecCCCccHHHHHhhhCCCcEEEEEeCChHHHHHHHHHHHcCCCeEEEEccCCCCcccccC-CCcEeEEE
Q 021911 140 WIKPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKRTNVIPIIEDARHPAKYRML-VGMVDVIF 218 (305)
Q Consensus 140 ~~~~g~~VLDlG~G~G~~t~~la~~~~~~~~V~avD~s~~~~~~l~~~a~~~~nI~~~~~D~~~~~~~~~~-~~~fD~V~ 218 (305)
.+.|+..+||++||.|+.+..+++.+.+.++|+|+|.++.++..+.+.+.+..++++++.|+.+....... ..+||.|+
T Consensus 16 ~~~pg~~vlD~TlG~GGhS~~il~~~~~~g~VigiD~D~~al~~ak~~L~~~~ri~~i~~~f~~l~~~l~~~~~~vDgIl 95 (296)
T PRK00050 16 AIKPDGIYVDGTFGGGGHSRAILERLGPKGRLIAIDRDPDAIAAAKDRLKPFGRFTLVHGNFSNLKEVLAEGLGKVDGIL 95 (296)
T ss_pred CCCCCCEEEEeCcCChHHHHHHHHhCCCCCEEEEEcCCHHHHHHHHHhhccCCcEEEEeCCHHHHHHHHHcCCCccCEEE
Confidence 46788999999999999999999998667899999999944444333322224799999999877543211 12799999
Q ss_pred EeCC
Q 021911 219 SDVA 222 (305)
Q Consensus 219 ~d~~ 222 (305)
+|.-
T Consensus 96 ~DLG 99 (296)
T PRK00050 96 LDLG 99 (296)
T ss_pred ECCC
Confidence 8764
|
|
| >PF05219 DREV: DREV methyltransferase; InterPro: IPR007884 This family contains DREV protein homologues from several eukaryotes | Back alignment and domain information |
|---|
Probab=98.78 E-value=1.7e-07 Score=83.17 Aligned_cols=92 Identities=22% Similarity=0.238 Sum_probs=70.6
Q ss_pred CCCEEEEEecCCCccHHHHHhhhCCCcEEEEEeCChHHHHHHHHHHHcCCCeEEEEccCCCCcccccCCCcEeEEEE-eC
Q 021911 143 PGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKRTNVIPIIEDARHPAKYRMLVGMVDVIFS-DV 221 (305)
Q Consensus 143 ~g~~VLDlG~G~G~~t~~la~~~~~~~~V~avD~s~~~~~~l~~~a~~~~nI~~~~~D~~~~~~~~~~~~~fD~V~~-d~ 221 (305)
...++||||||.|..|..++..+. +|+|.|+|+ .|....+++ +...+..| +... ...+||+|.| |+
T Consensus 94 ~~~~lLDlGAGdG~VT~~l~~~f~---~v~aTE~S~----~Mr~rL~~k-g~~vl~~~--~w~~---~~~~fDvIscLNv 160 (265)
T PF05219_consen 94 KDKSLLDLGAGDGEVTERLAPLFK---EVYATEASP----PMRWRLSKK-GFTVLDID--DWQQ---TDFKFDVISCLNV 160 (265)
T ss_pred cCCceEEecCCCcHHHHHHHhhcc---eEEeecCCH----HHHHHHHhC-CCeEEehh--hhhc---cCCceEEEeehhh
Confidence 357899999999999999999875 799999999 666666664 44433322 2221 1358999998 44
Q ss_pred C--ChhHHHHHHHHHhccCCCCcEEEEEE
Q 021911 222 A--QPDQARILALNASYFLKAGGHFVISI 248 (305)
Q Consensus 222 ~--~~~~~~~l~~~a~~~LkpGG~lv~s~ 248 (305)
. |..+..+|. .+++.|+|+|++++++
T Consensus 161 LDRc~~P~~LL~-~i~~~l~p~G~lilAv 188 (265)
T PF05219_consen 161 LDRCDRPLTLLR-DIRRALKPNGRLILAV 188 (265)
T ss_pred hhccCCHHHHHH-HHHHHhCCCCEEEEEE
Confidence 4 677777777 9999999999999976
|
The function of this protein is unknown []. However, these proteins appear to be related to other methyltransferases. |
| >COG4262 Predicted spermidine synthase with an N-terminal membrane domain [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.76 E-value=9.2e-08 Score=88.00 Aligned_cols=180 Identities=17% Similarity=0.245 Sum_probs=122.1
Q ss_pred CccccCcceeEeecCCCceeeeeecCchhhHHHHHHHccccccCCCCCCEEEEEecCCCccHHHHHhhhCC-CcEEEEEe
Q 021911 97 GEAVYNEKRISVQNEDGTKVEYRIWNPFRSKLAAAVLGGVDNIWIKPGARVLYLGAASGTTVSHVSDIVGP-NGVVYAVE 175 (305)
Q Consensus 97 ~~~~y~e~~~~~~d~~~~~~~~~~~~~~~s~l~a~ll~~l~~~~~~~g~~VLDlG~G~G~~t~~la~~~~~-~~~V~avD 175 (305)
..++|-++-..+...| |||.. ..|+-..+. ..+...+||-+|-|.|-....+.+. | -.+|+-||
T Consensus 256 d~rLYldG~LQfsTrD----e~RYh----EsLV~pals-----~~~~a~~vLvlGGGDGLAlRellky--P~~~qI~lVd 320 (508)
T COG4262 256 DLRLYLDGGLQFSTRD----EYRYH----ESLVYPALS-----SVRGARSVLVLGGGDGLALRELLKY--PQVEQITLVD 320 (508)
T ss_pred ceEEEEcCceeeeech----hhhhh----heeeecccc-----cccccceEEEEcCCchHHHHHHHhC--CCcceEEEEe
Confidence 3567777766555432 44332 222222221 3455689999999999998888887 4 56899999
Q ss_pred CChHHHHHHHHHHHcC-------------CCeEEEEccCCCCcccccCCCcEeEEEEeCCChh--------HHHHHHHHH
Q 021911 176 FSHRSGRDLVNMAKKR-------------TNVIPIIEDARHPAKYRMLVGMVDVIFSDVAQPD--------QARILALNA 234 (305)
Q Consensus 176 ~s~~~~~~l~~~a~~~-------------~nI~~~~~D~~~~~~~~~~~~~fD~V~~d~~~~~--------~~~~l~~~a 234 (305)
++| +|++.+++. ++++.+..|+.++... ..++||+||.|.+.|+ ..+... .+
T Consensus 321 LDP----~miela~~~~vlr~~N~~sf~dpRv~Vv~dDAf~wlr~--a~~~fD~vIVDl~DP~tps~~rlYS~eFY~-ll 393 (508)
T COG4262 321 LDP----RMIELASHATVLRALNQGSFSDPRVTVVNDDAFQWLRT--AADMFDVVIVDLPDPSTPSIGRLYSVEFYR-LL 393 (508)
T ss_pred cCH----HHHHHhhhhhHhhhhccCCccCCeeEEEeccHHHHHHh--hcccccEEEEeCCCCCCcchhhhhhHHHHH-HH
Confidence 999 555555422 6799999999877543 2469999999998553 223333 57
Q ss_pred hccCCCCcEEEEEEcccccCCCCchhhhHHHHHHHHHHCCCcEeEEeecCCCCCceEEEEEEEcCCCCC
Q 021911 235 SYFLKAGGHFVISIKANCIDSTVPAEAVFQSEVKKLQQDQFKPFEQVTLEPFERDHACVVGGYRMPKKQ 303 (305)
Q Consensus 235 ~~~LkpGG~lv~s~~~~~i~~~~~~~~v~~~~~~~l~~~Gf~~~e~~~l~p~~~~~~~vv~~~~~~~~~ 303 (305)
.+.|+++|.+++.. .+ +-....+|......++++||...-..-.-|--.++-++++.......+
T Consensus 394 ~~~l~e~Gl~VvQa--gs---~y~tp~vfw~i~aTik~AG~~~~Pyhv~VPTFGeWGf~l~~~~~~~fe 457 (508)
T COG4262 394 SRHLAETGLMVVQA--GS---PYFTPRVFWRIDATIKSAGYRVWPYHVHVPTFGEWGFILAAPGDADFE 457 (508)
T ss_pred HHhcCcCceEEEec--CC---CccCCceeeeehhHHHhCcceeeeeEEecCcccccceeecccccCCCC
Confidence 78999999999975 11 112234566667888999999887665555557888888877655443
|
|
| >PF05185 PRMT5: PRMT5 arginine-N-methyltransferase; InterPro: IPR007857 The human homologue of Saccharomyces cerevisiae Skb1 (Shk1 kinase-binding protein 1) is a protein methyltransferase [] | Back alignment and domain information |
|---|
Probab=98.72 E-value=5.8e-08 Score=93.96 Aligned_cols=97 Identities=27% Similarity=0.272 Sum_probs=69.1
Q ss_pred CCEEEEEecCCCccHHHHHhh---hCCCcEEEEEeCChHHHHHHHHHHHcC---CCeEEEEccCCCCcccccCCCcEeEE
Q 021911 144 GARVLYLGAASGTTVSHVSDI---VGPNGVVYAVEFSHRSGRDLVNMAKKR---TNVIPIIEDARHPAKYRMLVGMVDVI 217 (305)
Q Consensus 144 g~~VLDlG~G~G~~t~~la~~---~~~~~~V~avD~s~~~~~~l~~~a~~~---~nI~~~~~D~~~~~~~~~~~~~fD~V 217 (305)
...|||+|||+|.++...++. .+...+|||||-++.+...+.+.++.+ .+|++++.|+++... +.++|+|
T Consensus 187 ~~vVldVGAGrGpL~~~al~A~~~~~~a~~VyAVEkn~~A~~~l~~~v~~n~w~~~V~vi~~d~r~v~l----pekvDII 262 (448)
T PF05185_consen 187 DKVVLDVGAGRGPLSMFALQAGARAGGAVKVYAVEKNPNAVVTLQKRVNANGWGDKVTVIHGDMREVEL----PEKVDII 262 (448)
T ss_dssp T-EEEEES-TTSHHHHHHHHTTHHHCCESEEEEEESSTHHHHHHHHHHHHTTTTTTEEEEES-TTTSCH----SS-EEEE
T ss_pred ceEEEEeCCCccHHHHHHHHHHHHhCCCeEEEEEcCCHhHHHHHHHHHHhcCCCCeEEEEeCcccCCCC----CCceeEE
Confidence 578999999999998776654 233569999999997766655553333 689999999999863 4699999
Q ss_pred EEeCC-----ChhHHHHHHHHHhccCCCCcEEE
Q 021911 218 FSDVA-----QPDQARILALNASYFLKAGGHFV 245 (305)
Q Consensus 218 ~~d~~-----~~~~~~~l~~~a~~~LkpGG~lv 245 (305)
++... .....+.|. .+.++|||+|.++
T Consensus 263 VSElLGsfg~nEl~pE~Ld-a~~rfLkp~Gi~I 294 (448)
T PF05185_consen 263 VSELLGSFGDNELSPECLD-AADRFLKPDGIMI 294 (448)
T ss_dssp EE---BTTBTTTSHHHHHH-HGGGGEEEEEEEE
T ss_pred EEeccCCccccccCHHHHH-HHHhhcCCCCEEe
Confidence 99665 344556776 8899999998764
|
These proteins seem to play a role in Jak signalling.; GO: 0008168 methyltransferase activity, 0005737 cytoplasm; PDB: 2Y1W_C 2Y1X_D 2V7E_B 2V74_H 3R0Q_G 3B3F_B 3B3J_A 3B3G_A 3UA3_A 3UA4_B .... |
| >PRK14896 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Provisional | Back alignment and domain information |
|---|
Probab=98.71 E-value=1.7e-07 Score=84.52 Aligned_cols=78 Identities=22% Similarity=0.170 Sum_probs=61.9
Q ss_pred CCCCCCEEEEEecCCCccHHHHHhhhCCCcEEEEEeCChHHHHHHHHHHHcCCCeEEEEccCCCCcccccCCCcEeEEEE
Q 021911 140 WIKPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKRTNVIPIIEDARHPAKYRMLVGMVDVIFS 219 (305)
Q Consensus 140 ~~~~g~~VLDlG~G~G~~t~~la~~~~~~~~V~avD~s~~~~~~l~~~a~~~~nI~~~~~D~~~~~~~~~~~~~fD~V~~ 219 (305)
.+.++.+|||+|||+|.++..+++.. .+|+++|+++..+..+.+.+...+|+.+++.|+...+. ..||.|++
T Consensus 26 ~~~~~~~VLEIG~G~G~lt~~L~~~~---~~v~~vEid~~~~~~l~~~~~~~~~v~ii~~D~~~~~~-----~~~d~Vv~ 97 (258)
T PRK14896 26 EDTDGDPVLEIGPGKGALTDELAKRA---KKVYAIELDPRLAEFLRDDEIAAGNVEIIEGDALKVDL-----PEFNKVVS 97 (258)
T ss_pred CCCCcCeEEEEeCccCHHHHHHHHhC---CEEEEEECCHHHHHHHHHHhccCCCEEEEEeccccCCc-----hhceEEEE
Confidence 46678999999999999999999882 48999999996665555544434689999999987542 35799999
Q ss_pred eCCChh
Q 021911 220 DVAQPD 225 (305)
Q Consensus 220 d~~~~~ 225 (305)
|+|...
T Consensus 98 NlPy~i 103 (258)
T PRK14896 98 NLPYQI 103 (258)
T ss_pred cCCccc
Confidence 999443
|
|
| >PRK00274 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Reviewed | Back alignment and domain information |
|---|
Probab=98.69 E-value=2.3e-07 Score=84.31 Aligned_cols=95 Identities=17% Similarity=0.138 Sum_probs=68.6
Q ss_pred HHHHHHHccccccCCCCCCEEEEEecCCCccHHHHHhhhCCCcEEEEEeCChHHHHHHHHHHHcCCCeEEEEccCCCCcc
Q 021911 127 KLAAAVLGGVDNIWIKPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKRTNVIPIIEDARHPAK 206 (305)
Q Consensus 127 ~l~a~ll~~l~~~~~~~g~~VLDlG~G~G~~t~~la~~~~~~~~V~avD~s~~~~~~l~~~a~~~~nI~~~~~D~~~~~~ 206 (305)
.++..+++.+ .+.++.+|||+|||+|.++..+++.. .+|+++|+++.++..+.+.... ++++++++|+...+.
T Consensus 29 ~i~~~i~~~l---~~~~~~~VLEiG~G~G~lt~~L~~~~---~~v~avE~d~~~~~~~~~~~~~-~~v~~i~~D~~~~~~ 101 (272)
T PRK00274 29 NILDKIVDAA---GPQPGDNVLEIGPGLGALTEPLLERA---AKVTAVEIDRDLAPILAETFAE-DNLTIIEGDALKVDL 101 (272)
T ss_pred HHHHHHHHhc---CCCCcCeEEEeCCCccHHHHHHHHhC---CcEEEEECCHHHHHHHHHhhcc-CceEEEEChhhcCCH
Confidence 3444454333 46788999999999999999999984 2899999999555554443322 689999999987642
Q ss_pred cccCCCcEeEEEEeCCChhHHHHHH
Q 021911 207 YRMLVGMVDVIFSDVAQPDQARILA 231 (305)
Q Consensus 207 ~~~~~~~fD~V~~d~~~~~~~~~l~ 231 (305)
.. -.+|.|++|+|...-..++.
T Consensus 102 ~~---~~~~~vv~NlPY~iss~ii~ 123 (272)
T PRK00274 102 SE---LQPLKVVANLPYNITTPLLF 123 (272)
T ss_pred HH---cCcceEEEeCCccchHHHHH
Confidence 21 11599999999665566665
|
|
| >PF02384 N6_Mtase: N-6 DNA Methylase; InterPro: IPR003356 This domain is fpound in N-6 adenine-specific DNA methylase (2 | Back alignment and domain information |
|---|
Probab=98.68 E-value=2.3e-07 Score=85.82 Aligned_cols=155 Identities=18% Similarity=0.132 Sum_probs=85.6
Q ss_pred CCCCCCEEEEEecCCCccHHHHHhhh------CCCcEEEEEeCChHHHHHHH-HHHHcC---CCeEEEEccCCCCccccc
Q 021911 140 WIKPGARVLYLGAASGTTVSHVSDIV------GPNGVVYAVEFSHRSGRDLV-NMAKKR---TNVIPIIEDARHPAKYRM 209 (305)
Q Consensus 140 ~~~~g~~VLDlG~G~G~~t~~la~~~------~~~~~V~avD~s~~~~~~l~-~~a~~~---~nI~~~~~D~~~~~~~~~ 209 (305)
.+.++.+|||.+||+|.+...+.+.+ ....+++++|+++..+.-+. .+.-.. .++.+.+.|....+...
T Consensus 43 ~~~~~~~VlDPacGsG~fL~~~~~~i~~~~~~~~~~~i~G~ei~~~~~~la~~nl~l~~~~~~~~~i~~~d~l~~~~~~- 121 (311)
T PF02384_consen 43 NPKKGDSVLDPACGSGGFLVAAMEYIKEKRNKIKEINIYGIEIDPEAVALAKLNLLLHGIDNSNINIIQGDSLENDKFI- 121 (311)
T ss_dssp TT-TTEEEEETT-TTSHHHHHHHHHHHTCHHHHCCEEEEEEES-HHHHHHHHHHHHHTTHHCBGCEEEES-TTTSHSCT-
T ss_pred hccccceeechhhhHHHHHHHHHHhhcccccccccceeEeecCcHHHHHHHHhhhhhhccccccccccccccccccccc-
Confidence 56778899999999999999988754 24568999999985533221 111111 34567788876554321
Q ss_pred CCCcEeEEEEeCCCh-----------------------hHHHHHHHHHhccCCCCcEEEEEEcccccCCCCchhhhHHHH
Q 021911 210 LVGMVDVIFSDVAQP-----------------------DQARILALNASYFLKAGGHFVISIKANCIDSTVPAEAVFQSE 266 (305)
Q Consensus 210 ~~~~fD~V~~d~~~~-----------------------~~~~~l~~~a~~~LkpGG~lv~s~~~~~i~~~~~~~~v~~~~ 266 (305)
....||+|++|+|.- ...-.+..++.+.||++|++++.++...+.... .. ...
T Consensus 122 ~~~~~D~ii~NPPf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Fi~~~l~~Lk~~G~~~~Ilp~~~L~~~~-~~---~~i 197 (311)
T PF02384_consen 122 KNQKFDVIIGNPPFGSKEWKDEELEKDERFKKYFPPKSNAEYAFIEHALSLLKPGGRAAIILPNGFLFSSS-SE---KKI 197 (311)
T ss_dssp ST--EEEEEEE--CTCES-STGGGCTTCCCTTCSSSTTEHHHHHHHHHHHTEEEEEEEEEEEEHHHHHGST-HH---HHH
T ss_pred cccccccccCCCCccccccccccccccccccccCCCccchhhhhHHHHHhhcccccceeEEecchhhhccc-hH---HHH
Confidence 246899999999910 111234448999999999999988533322211 11 112
Q ss_pred HHHHHHCCCcEeEEeecCC-----CCCceEEEEEEEcCC
Q 021911 267 VKKLQQDQFKPFEQVTLEP-----FERDHACVVGGYRMP 300 (305)
Q Consensus 267 ~~~l~~~Gf~~~e~~~l~p-----~~~~~~~vv~~~~~~ 300 (305)
.+.|.+. +.+..++.+.+ ..-.-++++..+.++
T Consensus 198 R~~ll~~-~~i~aVI~Lp~~~F~~t~v~t~ilil~k~~~ 235 (311)
T PF02384_consen 198 RKYLLEN-GYIEAVISLPSNLFKPTGVPTSILILNKKKP 235 (311)
T ss_dssp HHHHHHH-EEEEEEEE--TTSSSSSSS-EEEEEEEESSS
T ss_pred HHHHHhh-chhhEEeecccceecccCcCceEEEEeeccc
Confidence 3444333 34556665532 233445555665553
|
1.1.72 from EC) from Type I and Type IC restriction systems. These enzymes are responsible for the methylation of specific DNA sequences in order to prevent the host from digesting its own genome via its restriction enzymes. These methylases have the same sequence specificity as their corresponding restriction enzymes. The type I restriction and modification system is composed of three polypeptides R, M and S. The M and S subunits together form a methyltransferase that methylates two adenine residues in complementary strands of a bipartite DNA recognition sequence. In the presence of the R subunit, the complex can also act as an endonuclease, binding to the same target sequence but cutting the DNA some distance from this site. Whether the DNA is cut or modified depends on the methylation state of the target sequence. When the target site is unmodified, the DNA is cut. When the target site is hemimethylated, the complex acts as a maintenance methyltransferase, modifying the DNA so that both strands become methylated.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2F8L_A 2Y7C_C 2Y7H_C 2AR0_B 3KHK_A 3LKD_A 2OKC_B. |
| >KOG1541 consensus Predicted protein carboxyl methylase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.66 E-value=7.7e-07 Score=76.89 Aligned_cols=149 Identities=19% Similarity=0.171 Sum_probs=91.8
Q ss_pred hHHHHHHHccccccCCCC--CCEEEEEecCCCccHHHHHhhhCCCcEEEEEeCChHHHHHHHHHHHcCC-CeEEEEccCC
Q 021911 126 SKLAAAVLGGVDNIWIKP--GARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKRT-NVIPIIEDAR 202 (305)
Q Consensus 126 s~l~a~ll~~l~~~~~~~--g~~VLDlG~G~G~~t~~la~~~~~~~~V~avD~s~~~~~~l~~~a~~~~-nI~~~~~D~~ 202 (305)
..++...|+.|+ +++ ..-|||||||+|..+..+.+. .-..++||+|+ .|++.+.++. .-.++.+|+-
T Consensus 34 ~em~eRaLELLa---lp~~~~~~iLDIGCGsGLSg~vL~~~---Gh~wiGvDiSp----sML~~a~~~e~egdlil~DMG 103 (270)
T KOG1541|consen 34 AEMAERALELLA---LPGPKSGLILDIGCGSGLSGSVLSDS---GHQWIGVDISP----SMLEQAVERELEGDLILCDMG 103 (270)
T ss_pred HHHHHHHHHHhh---CCCCCCcEEEEeccCCCcchheeccC---CceEEeecCCH----HHHHHHHHhhhhcCeeeeecC
Confidence 345555444443 333 678999999999999888876 24789999999 6666666531 1357888886
Q ss_pred CCcccccCCCcEeEEEEeCC------------Ch--hHHHHHHHHHhccCCCCcEEEEEEcccccCCCCchhhhHHHHHH
Q 021911 203 HPAKYRMLVGMVDVIFSDVA------------QP--DQARILALNASYFLKAGGHFVISIKANCIDSTVPAEAVFQSEVK 268 (305)
Q Consensus 203 ~~~~~~~~~~~fD~V~~d~~------------~~--~~~~~l~~~a~~~LkpGG~lv~s~~~~~i~~~~~~~~v~~~~~~ 268 (305)
...+. .+++||.||+-.+ .| .....+. ..+.+|+++++.++..+ .++...+ ....+
T Consensus 104 ~Glpf--rpGtFDg~ISISAvQWLcnA~~s~~~P~~Rl~~FF~-tLy~~l~rg~raV~QfY------pen~~q~-d~i~~ 173 (270)
T KOG1541|consen 104 EGLPF--RPGTFDGVISISAVQWLCNADKSLHVPKKRLLRFFG-TLYSCLKRGARAVLQFY------PENEAQI-DMIMQ 173 (270)
T ss_pred CCCCC--CCCccceEEEeeeeeeecccCccccChHHHHHHHhh-hhhhhhccCceeEEEec------ccchHHH-HHHHH
Confidence 54443 4789999986333 11 1223343 67889999999999873 2333332 12233
Q ss_pred HHHHCCCcEeEEeecCC--CCCceEEEE
Q 021911 269 KLQQDQFKPFEQVTLEP--FERDHACVV 294 (305)
Q Consensus 269 ~l~~~Gf~~~e~~~l~p--~~~~~~~vv 294 (305)
....+||----+++... -.+.+++|+
T Consensus 174 ~a~~aGF~GGlvVd~Pes~k~kK~yLVL 201 (270)
T KOG1541|consen 174 QAMKAGFGGGLVVDWPESTKNKKYYLVL 201 (270)
T ss_pred HHHhhccCCceeeecccccccceeEEEE
Confidence 44457776444444421 224555555
|
|
| >KOG2187 consensus tRNA uracil-5-methyltransferase and related tRNA-modifying enzymes [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.65 E-value=8.3e-08 Score=91.97 Aligned_cols=158 Identities=15% Similarity=0.066 Sum_probs=99.2
Q ss_pred CchhhHHHHHHHccccccCCCCCCEEEEEecCCCccHHHHHhhhCCCcEEEEEeCChHHHHHHHHHHHcC--CCeEEEEc
Q 021911 122 NPFRSKLAAAVLGGVDNIWIKPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKR--TNVIPIIE 199 (305)
Q Consensus 122 ~~~~s~l~a~ll~~l~~~~~~~g~~VLDlG~G~G~~t~~la~~~~~~~~V~avD~s~~~~~~l~~~a~~~--~nI~~~~~ 199 (305)
++....|...+-+++ .+..+..+||+|||||++.+.+|+.+. .|++||+++.++.++..+|+.+ .|.+|+++
T Consensus 365 t~~aevLys~i~e~~---~l~~~k~llDv~CGTG~iglala~~~~---~ViGvEi~~~aV~dA~~nA~~NgisNa~Fi~g 438 (534)
T KOG2187|consen 365 TSAAEVLYSTIGEWA---GLPADKTLLDVCCGTGTIGLALARGVK---RVIGVEISPDAVEDAEKNAQINGISNATFIVG 438 (534)
T ss_pred cHHHHHHHHHHHHHh---CCCCCcEEEEEeecCCceehhhhcccc---ceeeeecChhhcchhhhcchhcCccceeeeec
Confidence 344444444443322 567789999999999999999999864 8999999998888888888877 79999999
Q ss_pred cCCCCccccc--CCCcEe-EEEEeCCChhHHHHHHHHHhccCC-CCcEEEEEEcccccCCC-CchhhhHHHHHHHHHHCC
Q 021911 200 DARHPAKYRM--LVGMVD-VIFSDVAQPDQARILALNASYFLK-AGGHFVISIKANCIDST-VPAEAVFQSEVKKLQQDQ 274 (305)
Q Consensus 200 D~~~~~~~~~--~~~~fD-~V~~d~~~~~~~~~l~~~a~~~Lk-pGG~lv~s~~~~~i~~~-~~~~~v~~~~~~~l~~~G 274 (305)
-+.++-+... ..++=+ ++++|+|.+-....+. ++.+..+ +- +|+|.+ |+.... .+....+.........-.
T Consensus 439 qaE~~~~sl~~~~~~~~~~v~iiDPpR~Glh~~~i-k~l~~~~~~~-rlvyvS--Cn~~t~ar~v~~lc~~~~~~~~~g~ 514 (534)
T KOG2187|consen 439 QAEDLFPSLLTPCCDSETLVAIIDPPRKGLHMKVI-KALRAYKNPR-RLVYVS--CNPHTAARNVIDLCSSPKYRLKKGF 514 (534)
T ss_pred chhhccchhcccCCCCCceEEEECCCcccccHHHH-HHHHhccCcc-ceEEEE--cCHHHhhhhHHHhhcCccccccccc
Confidence 6655433211 112445 7788999765555555 4444444 44 566665 553321 122222222222333445
Q ss_pred CcEeEEeecCCCCCc
Q 021911 275 FKPFEQVTLEPFERD 289 (305)
Q Consensus 275 f~~~e~~~l~p~~~~ 289 (305)
|++.+.+.++.|.+.
T Consensus 515 fr~~~~~~VDlfP~T 529 (534)
T KOG2187|consen 515 FRLVKAVGVDLFPHT 529 (534)
T ss_pred cceeeeeecccCCCC
Confidence 778777765555544
|
|
| >TIGR00755 ksgA dimethyladenosine transferase | Back alignment and domain information |
|---|
Probab=98.65 E-value=3.4e-07 Score=82.32 Aligned_cols=98 Identities=14% Similarity=0.082 Sum_probs=70.6
Q ss_pred HHHHHHHccccccCCCCCCEEEEEecCCCccHHHHHhhhCCCcEEEEEeCChHHHHHHHHHHHcCCCeEEEEccCCCCcc
Q 021911 127 KLAAAVLGGVDNIWIKPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKRTNVIPIIEDARHPAK 206 (305)
Q Consensus 127 ~l~a~ll~~l~~~~~~~g~~VLDlG~G~G~~t~~la~~~~~~~~V~avD~s~~~~~~l~~~a~~~~nI~~~~~D~~~~~~ 206 (305)
.+...+++.+ .+.++.+|||+|||+|.++..+++... .|+++|+++..+..+.+.....+++++++.|+...+.
T Consensus 16 ~i~~~i~~~~---~~~~~~~VLEiG~G~G~lt~~L~~~~~---~v~~iE~d~~~~~~l~~~~~~~~~v~v~~~D~~~~~~ 89 (253)
T TIGR00755 16 SVIQKIVEAA---NVLEGDVVLEIGPGLGALTEPLLKRAK---KVTAIEIDPRLAEILRKLLSLYERLEVIEGDALKVDL 89 (253)
T ss_pred HHHHHHHHhc---CCCCcCEEEEeCCCCCHHHHHHHHhCC---cEEEEECCHHHHHHHHHHhCcCCcEEEEECchhcCCh
Confidence 3444554333 466789999999999999999999852 6999999996655544443333689999999987653
Q ss_pred cccCCCcEe---EEEEeCCChhHHHHHHHHHhc
Q 021911 207 YRMLVGMVD---VIFSDVAQPDQARILALNASY 236 (305)
Q Consensus 207 ~~~~~~~fD---~V~~d~~~~~~~~~l~~~a~~ 236 (305)
. .+| +|++|+|...-..++. +...
T Consensus 90 ~-----~~d~~~~vvsNlPy~i~~~il~-~ll~ 116 (253)
T TIGR00755 90 P-----DFPKQLKVVSNLPYNISSPLIF-KLLE 116 (253)
T ss_pred h-----HcCCcceEEEcCChhhHHHHHH-HHhc
Confidence 2 455 9999999766666666 4443
|
Alternate name: S-adenosylmethionine--6-N',N'-adenosyl (rRNA) dimethyltransferase |
| >PF10294 Methyltransf_16: Putative methyltransferase; InterPro: IPR019410 There are a number of unidentified genes that have a high probability of coding for methyltransferases | Back alignment and domain information |
|---|
Probab=98.62 E-value=3.4e-07 Score=77.65 Aligned_cols=133 Identities=20% Similarity=0.187 Sum_probs=72.2
Q ss_pred ceeeeeecCchhhHHHHHHHcccc---ccCCCCCCEEEEEecCCCccHHHHHhhhCCCcEEEEEeCChHHHHHHHHHHHc
Q 021911 114 TKVEYRIWNPFRSKLAAAVLGGVD---NIWIKPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKK 190 (305)
Q Consensus 114 ~~~~~~~~~~~~s~l~a~ll~~l~---~~~~~~g~~VLDlG~G~G~~t~~la~~~~~~~~V~avD~s~~~~~~l~~~a~~ 190 (305)
.-...+.|+. .-.|+..++.... ......+.+|||||||+|..++.+|... ....|+..|.++ .+..+..+++.
T Consensus 14 ~~~G~~vW~a-a~~La~~l~~~~~~~~~~~~~~~~~VLELGaG~Gl~gi~~a~~~-~~~~Vv~TD~~~-~l~~l~~Ni~~ 90 (173)
T PF10294_consen 14 DGTGGKVWPA-ALVLARYLLSHSESEFNPELFRGKRVLELGAGTGLPGIAAAKLF-GAARVVLTDYNE-VLELLRRNIEL 90 (173)
T ss_dssp ---------H-HHHHHHHHHH-------GGGTTTSEEEETT-TTSHHHHHHHHT--T-SEEEEEE-S--HHHHHHHHHHT
T ss_pred cCCcEEEech-HHHHHHHHHHhcccccchhhcCCceEEEECCccchhHHHHHhcc-CCceEEEeccch-hhHHHHHHHHh
Confidence 3457888854 4455555554210 1245567899999999999999998874 456899999998 55555555544
Q ss_pred C-----CCeEEEEccCCCCccccc-CCCcEeEEEE-eCC-ChhHHHHHHHHHhccCCCCcEEEEEEc
Q 021911 191 R-----TNVIPIIEDARHPAKYRM-LVGMVDVIFS-DVA-QPDQARILALNASYFLKAGGHFVISIK 249 (305)
Q Consensus 191 ~-----~nI~~~~~D~~~~~~~~~-~~~~fD~V~~-d~~-~~~~~~~l~~~a~~~LkpGG~lv~s~~ 249 (305)
+ .++.+...|..+...... ...+||+|++ |.. .+...+.|...+.++|++++.++++.+
T Consensus 91 N~~~~~~~v~v~~L~Wg~~~~~~~~~~~~~D~IlasDv~Y~~~~~~~L~~tl~~ll~~~~~vl~~~~ 157 (173)
T PF10294_consen 91 NGSLLDGRVSVRPLDWGDELDSDLLEPHSFDVILASDVLYDEELFEPLVRTLKRLLKPNGKVLLAYK 157 (173)
T ss_dssp T--------EEEE--TTS-HHHHHHS-SSBSEEEEES--S-GGGHHHHHHHHHHHBTT-TTEEEEEE
T ss_pred ccccccccccCcEEEecCcccccccccccCCEEEEecccchHHHHHHHHHHHHHHhCCCCEEEEEeC
Confidence 2 567888888765331111 2358999996 444 344444455478899999999888763
|
They make up approximately 0.6-1.6% of the genes in the yeast, human, mouse, Drosophila melanogaster, Caenorhabditis elegans, Arabidopsis thaliana, and Escherichia coli genomes []. This entry represents putative nicotinamide N-methyltransferases involved in rDNA silencing and in lifespan determination. ; PDB: 3BZB_A. |
| >PRK11727 23S rRNA mA1618 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.60 E-value=2e-06 Score=79.75 Aligned_cols=79 Identities=9% Similarity=0.013 Sum_probs=56.4
Q ss_pred CCCEEEEEecCCCccHHHHHhhhCCCcEEEEEeCChHHHHHHHHHHHcCC----CeEEEE-ccCCCCccc-ccCCCcEeE
Q 021911 143 PGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKRT----NVIPII-EDARHPAKY-RMLVGMVDV 216 (305)
Q Consensus 143 ~g~~VLDlG~G~G~~t~~la~~~~~~~~V~avD~s~~~~~~l~~~a~~~~----nI~~~~-~D~~~~~~~-~~~~~~fD~ 216 (305)
+..+|||||||+|.....++... +..+++|+|+++.+++.+.++++.++ +|.+++ .|....... ......||+
T Consensus 114 ~~~~vLDIGtGag~I~~lLa~~~-~~~~~~atDId~~Al~~A~~Nv~~Np~l~~~I~~~~~~~~~~i~~~i~~~~~~fDl 192 (321)
T PRK11727 114 ANVRVLDIGVGANCIYPLIGVHE-YGWRFVGSDIDPQALASAQAIISANPGLNGAIRLRLQKDSKAIFKGIIHKNERFDA 192 (321)
T ss_pred CCceEEEecCCccHHHHHHHhhC-CCCEEEEEeCCHHHHHHHHHHHHhccCCcCcEEEEEccchhhhhhcccccCCceEE
Confidence 46899999999998888887764 46799999999987777777766652 466654 333222111 012458999
Q ss_pred EEEeCC
Q 021911 217 IFSDVA 222 (305)
Q Consensus 217 V~~d~~ 222 (305)
|+||+|
T Consensus 193 ivcNPP 198 (321)
T PRK11727 193 TLCNPP 198 (321)
T ss_pred EEeCCC
Confidence 999999
|
|
| >KOG1500 consensus Protein arginine N-methyltransferase CARM1 [Posttranslational modification, protein turnover, chaperones; Transcription] | Back alignment and domain information |
|---|
Probab=98.60 E-value=2.1e-07 Score=84.87 Aligned_cols=98 Identities=23% Similarity=0.236 Sum_probs=71.1
Q ss_pred CCCEEEEEecCCCccHHHHHhhhCCCcEEEEEeCChHHHHHHHHHHHcC---CCeEEEEccCCCCcccccCCCcEeEEEE
Q 021911 143 PGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKR---TNVIPIIEDARHPAKYRMLVGMVDVIFS 219 (305)
Q Consensus 143 ~g~~VLDlG~G~G~~t~~la~~~~~~~~V~avD~s~~~~~~l~~~a~~~---~nI~~~~~D~~~~~~~~~~~~~fD~V~~ 219 (305)
.+..|||+|||+|.++...|.. ...+|||||.|+ +...+.+..+.+ ++|..|..-+.+.. +++++|+||+
T Consensus 177 ~~kiVlDVGaGSGILS~FAaqA--GA~~vYAvEAS~-MAqyA~~Lv~~N~~~~rItVI~GKiEdie----LPEk~DviIS 249 (517)
T KOG1500|consen 177 QDKIVLDVGAGSGILSFFAAQA--GAKKVYAVEASE-MAQYARKLVASNNLADRITVIPGKIEDIE----LPEKVDVIIS 249 (517)
T ss_pred CCcEEEEecCCccHHHHHHHHh--CcceEEEEehhH-HHHHHHHHHhcCCccceEEEccCcccccc----CchhccEEEe
Confidence 4689999999999999888877 466999999995 222222222222 56888877766653 4689999999
Q ss_pred eCC-----ChhHHHHHHHHHhccCCCCcEEEEEE
Q 021911 220 DVA-----QPDQARILALNASYFLKAGGHFVISI 248 (305)
Q Consensus 220 d~~-----~~~~~~~l~~~a~~~LkpGG~lv~s~ 248 (305)
.+. .....+... .|.++|||.|.++=..
T Consensus 250 EPMG~mL~NERMLEsYl-~Ark~l~P~GkMfPT~ 282 (517)
T KOG1500|consen 250 EPMGYMLVNERMLESYL-HARKWLKPNGKMFPTV 282 (517)
T ss_pred ccchhhhhhHHHHHHHH-HHHhhcCCCCcccCcc
Confidence 887 233445555 7889999999987654
|
|
| >PF09445 Methyltransf_15: RNA cap guanine-N2 methyltransferase; InterPro: IPR019012 RNA cap guanine-N2 methyltransferases such as Schizosaccharomyces pombe (Fission yeast) trimethylguanosine synthase (Tgs1) and Giardia lamblia (Giardia intestinalis) Tgs2, catalyse the methylation step(s) for the conversion of the 7-monomethylguanosine (m(7)G) caps of snRNAs and snoRNAs to a 2,2,7-trimethylguanosine (m(2,2,7)G) cap structure [, , ] | Back alignment and domain information |
|---|
Probab=98.60 E-value=5.2e-08 Score=81.40 Aligned_cols=75 Identities=17% Similarity=0.049 Sum_probs=51.6
Q ss_pred CEEEEEecCCCccHHHHHhhhCCCcEEEEEeCChHHHHHHHHHHHcC---CCeEEEEccCCCCcccccCCCcEeEEEEeC
Q 021911 145 ARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKR---TNVIPIIEDARHPAKYRMLVGMVDVIFSDV 221 (305)
Q Consensus 145 ~~VLDlG~G~G~~t~~la~~~~~~~~V~avD~s~~~~~~l~~~a~~~---~nI~~~~~D~~~~~~~~~~~~~fD~V~~d~ 221 (305)
..|||++||.|..+.++|..+. .|+|||+++.+++-+..+++.. ++|.++++|+.+..........+|+||+++
T Consensus 1 ~~vlD~fcG~GGNtIqFA~~~~---~Viaidid~~~~~~a~hNa~vYGv~~~I~~i~gD~~~~~~~~~~~~~~D~vFlSP 77 (163)
T PF09445_consen 1 TTVLDAFCGVGGNTIQFARTFD---RVIAIDIDPERLECAKHNAEVYGVADNIDFICGDFFELLKRLKSNKIFDVVFLSP 77 (163)
T ss_dssp SEEEETT-TTSHHHHHHHHTT----EEEEEES-HHHHHHHHHHHHHTT-GGGEEEEES-HHHHGGGB------SEEEE--
T ss_pred CEEEEeccCcCHHHHHHHHhCC---eEEEEECCHHHHHHHHHHHHHcCCCCcEEEEeCCHHHHHhhccccccccEEEECC
Confidence 3699999999999999999853 8999999997777666666655 589999999977643211112289999999
Q ss_pred C
Q 021911 222 A 222 (305)
Q Consensus 222 ~ 222 (305)
|
T Consensus 78 P 78 (163)
T PF09445_consen 78 P 78 (163)
T ss_dssp -
T ss_pred C
Confidence 9
|
Trimethylguanosine synthase is specific for guanine, and N7 methylation must precede N2 methylation. This enzyme is required for pre-mRNA splicing, pre-rRNA processing and small ribosomal subunit synthesis. As such, this enzyme plays a role in transcriptional regulation. ; GO: 0008168 methyltransferase activity, 0001510 RNA methylation, 0009452 RNA capping; PDB: 3EGI_B 3GDH_A. |
| >TIGR00308 TRM1 tRNA(guanine-26,N2-N2) methyltransferase | Back alignment and domain information |
|---|
Probab=98.59 E-value=2.4e-07 Score=87.64 Aligned_cols=100 Identities=17% Similarity=0.099 Sum_probs=79.0
Q ss_pred CCEEEEEecCCCccHHHHHhhhCCCcEEEEEeCChHHHHHHHHHHHcC--CCeEEEEccCCCCcccccCCCcEeEEEEeC
Q 021911 144 GARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKR--TNVIPIIEDARHPAKYRMLVGMVDVIFSDV 221 (305)
Q Consensus 144 g~~VLDlG~G~G~~t~~la~~~~~~~~V~avD~s~~~~~~l~~~a~~~--~nI~~~~~D~~~~~~~~~~~~~fD~V~~d~ 221 (305)
+.+|||+.||+|..++.++........|+++|+++.+++.+.++++.+ .++++++.|+...... ....||+|++|+
T Consensus 45 ~~~vLD~faGsG~rgir~a~e~~ga~~Vv~nD~n~~Av~~i~~N~~~N~~~~~~v~~~Da~~~l~~--~~~~fDvIdlDP 122 (374)
T TIGR00308 45 YINIADALSASGIRAIRYAHEIEGVREVFANDINPKAVESIKNNVEYNSVENIEVPNEDAANVLRY--RNRKFHVIDIDP 122 (374)
T ss_pred CCEEEECCCchhHHHHHHHhhCCCCCEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEchhHHHHHHH--hCCCCCEEEeCC
Confidence 358999999999999999987533358999999998888877777655 4688999998766432 135799999999
Q ss_pred CChhHHHHHHHHHhccCCCCcEEEEE
Q 021911 222 AQPDQARILALNASYFLKAGGHFVIS 247 (305)
Q Consensus 222 ~~~~~~~~l~~~a~~~LkpGG~lv~s 247 (305)
. ......+. .+.+.++++|.|+++
T Consensus 123 f-Gs~~~fld-~al~~~~~~glL~vT 146 (374)
T TIGR00308 123 F-GTPAPFVD-SAIQASAERGLLLVT 146 (374)
T ss_pred C-CCcHHHHH-HHHHhcccCCEEEEE
Confidence 5 33345555 788899999999997
|
This enzyme is responsible for two methylations of a characteristic guanine of most tRNA molecules. The activity has been demonstrated for eukaryotic and archaeal proteins, which are active when expressed in E. coli, a species that lacks this enzyme. At least one Eubacterium, Aquifex aeolicus, has an ortholog, as do all completed archaeal genomes. |
| >PTZ00338 dimethyladenosine transferase-like protein; Provisional | Back alignment and domain information |
|---|
Probab=98.59 E-value=3.6e-07 Score=83.90 Aligned_cols=84 Identities=21% Similarity=0.254 Sum_probs=64.9
Q ss_pred CCCCCCEEEEEecCCCccHHHHHhhhCCCcEEEEEeCChHHHHHHHHHHHc---CCCeEEEEccCCCCcccccCCCcEeE
Q 021911 140 WIKPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKK---RTNVIPIIEDARHPAKYRMLVGMVDV 216 (305)
Q Consensus 140 ~~~~g~~VLDlG~G~G~~t~~la~~~~~~~~V~avD~s~~~~~~l~~~a~~---~~nI~~~~~D~~~~~~~~~~~~~fD~ 216 (305)
.+.++.+|||+|||+|.+|..+++.. .+|+++|++++.+..+.+.... .+++++++.|+...+ ...||+
T Consensus 33 ~~~~~~~VLEIG~G~G~LT~~Ll~~~---~~V~avEiD~~li~~l~~~~~~~~~~~~v~ii~~Dal~~~-----~~~~d~ 104 (294)
T PTZ00338 33 AIKPTDTVLEIGPGTGNLTEKLLQLA---KKVIAIEIDPRMVAELKKRFQNSPLASKLEVIEGDALKTE-----FPYFDV 104 (294)
T ss_pred CCCCcCEEEEecCchHHHHHHHHHhC---CcEEEEECCHHHHHHHHHHHHhcCCCCcEEEEECCHhhhc-----ccccCE
Confidence 56788999999999999999999873 4799999999666666555443 268999999997653 246899
Q ss_pred EEEeCCChhHHHHHH
Q 021911 217 IFSDVAQPDQARILA 231 (305)
Q Consensus 217 V~~d~~~~~~~~~l~ 231 (305)
|++|+|......++.
T Consensus 105 VvaNlPY~Istpil~ 119 (294)
T PTZ00338 105 CVANVPYQISSPLVF 119 (294)
T ss_pred EEecCCcccCcHHHH
Confidence 999999544444444
|
|
| >KOG1663 consensus O-methyltransferase [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=98.58 E-value=6.2e-07 Score=78.03 Aligned_cols=116 Identities=18% Similarity=0.217 Sum_probs=89.2
Q ss_pred hhHHHHHHHccccccCCCCCCEEEEEecCCCccHHHHHhhhCCCcEEEEEeCChHHHHHHHHHHHcC---CCeEEEEccC
Q 021911 125 RSKLAAAVLGGVDNIWIKPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKR---TNVIPIIEDA 201 (305)
Q Consensus 125 ~s~l~a~ll~~l~~~~~~~g~~VLDlG~G~G~~t~~la~~~~~~~~V~avD~s~~~~~~l~~~a~~~---~nI~~~~~D~ 201 (305)
..++.+.++ .+...+++||||.=+|..++.+|..+.+.++|+++|+++...+-..+..+.. ..|.+++.++
T Consensus 61 ~g~fl~~li------~~~~ak~~lelGvfTGySaL~~Alalp~dGrv~a~eid~~~~~~~~~~~k~agv~~KI~~i~g~a 134 (237)
T KOG1663|consen 61 KGQFLQMLI------RLLNAKRTLELGVFTGYSALAVALALPEDGRVVAIEIDADAYEIGLELVKLAGVDHKITFIEGPA 134 (237)
T ss_pred HHHHHHHHH------HHhCCceEEEEecccCHHHHHHHHhcCCCceEEEEecChHHHHHhHHHHHhccccceeeeeecch
Confidence 445555554 3445689999999999999999999999999999999986655444444433 6799999887
Q ss_pred CCCccc---ccCCCcEeEEEEeCCChhHHHHHHHHHhccCCCCcEEEEE
Q 021911 202 RHPAKY---RMLVGMVDVIFSDVAQPDQARILALNASYFLKAGGHFVIS 247 (305)
Q Consensus 202 ~~~~~~---~~~~~~fD~V~~d~~~~~~~~~l~~~a~~~LkpGG~lv~s 247 (305)
.+.... ....+.||++|+|.--.+....+. ++.++||+||.|++-
T Consensus 135 ~esLd~l~~~~~~~tfDfaFvDadK~nY~~y~e-~~l~Llr~GGvi~~D 182 (237)
T KOG1663|consen 135 LESLDELLADGESGTFDFAFVDADKDNYSNYYE-RLLRLLRVGGVIVVD 182 (237)
T ss_pred hhhHHHHHhcCCCCceeEEEEccchHHHHHHHH-HHHhhcccccEEEEe
Confidence 654321 113579999999999777776666 899999999999885
|
|
| >PF01234 NNMT_PNMT_TEMT: NNMT/PNMT/TEMT family; InterPro: IPR000940 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals | Back alignment and domain information |
|---|
Probab=98.56 E-value=7.5e-07 Score=79.84 Aligned_cols=137 Identities=17% Similarity=0.161 Sum_probs=79.8
Q ss_pred CCCEEEEEecCCCccHHHHHhhhCCCcEEEEEeCChHHHHHHHHHHHcC------------------------------C
Q 021911 143 PGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKR------------------------------T 192 (305)
Q Consensus 143 ~g~~VLDlG~G~G~~t~~la~~~~~~~~V~avD~s~~~~~~l~~~a~~~------------------------------~ 192 (305)
.+.++||+||||=..-..-|.. ---+|+..|+++...+++.+..++. .
T Consensus 56 ~g~~llDiGsGPtiy~~lsa~~--~f~~I~l~dy~~~N~~el~kWl~~~~a~DWs~~~~~v~~lEg~~~~~~e~e~~lR~ 133 (256)
T PF01234_consen 56 KGETLLDIGSGPTIYQLLSACE--WFEEIVLSDYSEQNREELEKWLRKEGAFDWSPFWKYVCELEGKREKWEEKEEKLRR 133 (256)
T ss_dssp -EEEEEEES-TT--GGGTTGGG--TEEEEEEEESSHHHHHHHHHHHTT-TS--THHHHHHHHHHTTSSSGHHHHHHHHHH
T ss_pred CCCEEEEeCCCcHHHhhhhHHH--hhcceEEeeccHhhHHHHHHHHCCCCCCCccHHHHHHHhccCCcchhhhHHHHHHH
Confidence 4679999999994432222212 2237999999998877666555432 1
Q ss_pred CeE-EEEccCCCCccccc---CCCcEeEEEEeCC----Ch---hHHHHHHHHHhccCCCCcEEEEEEccccc----CCCC
Q 021911 193 NVI-PIIEDARHPAKYRM---LVGMVDVIFSDVA----QP---DQARILALNASYFLKAGGHFVISIKANCI----DSTV 257 (305)
Q Consensus 193 nI~-~~~~D~~~~~~~~~---~~~~fD~V~~d~~----~~---~~~~~l~~~a~~~LkpGG~lv~s~~~~~i----~~~~ 257 (305)
.|. ++.+|++..++... ++.+||+|++... ++ ...+.+. ++.++|||||+|++.....+. ....
T Consensus 134 ~Vk~Vv~cDV~~~~pl~~~~~~p~~~D~v~s~fcLE~a~~d~~~y~~al~-ni~~lLkpGG~Lil~~~l~~t~Y~vG~~~ 212 (256)
T PF01234_consen 134 AVKQVVPCDVTQPNPLDPPVVLPPKFDCVISSFCLESACKDLDEYRRALR-NISSLLKPGGHLILAGVLGSTYYMVGGHK 212 (256)
T ss_dssp HEEEEEE--TTSSSTTTTS-SS-SSEEEEEEESSHHHH-SSHHHHHHHHH-HHHTTEEEEEEEEEEEESS-SEEEETTEE
T ss_pred hhceEEEeeccCCCCCCccccCccchhhhhhhHHHHHHcCCHHHHHHHHH-HHHHHcCCCcEEEEEEEcCceeEEECCEe
Confidence 233 66789988776543 2346999998665 32 3445555 999999999999997632221 1111
Q ss_pred chhhhHH-HH-HHHHHHCCCcEeEEee
Q 021911 258 PAEAVFQ-SE-VKKLQQDQFKPFEQVT 282 (305)
Q Consensus 258 ~~~~v~~-~~-~~~l~~~Gf~~~e~~~ 282 (305)
.+...+. +. .+.|+++||.+.+...
T Consensus 213 F~~l~l~ee~v~~al~~aG~~i~~~~~ 239 (256)
T PF01234_consen 213 FPCLPLNEEFVREALEEAGFDIEDLEK 239 (256)
T ss_dssp EE---B-HHHHHHHHHHTTEEEEEEEG
T ss_pred cccccCCHHHHHHHHHHcCCEEEeccc
Confidence 1111111 11 4667899999887764
|
The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Several cytoplasmic vertebrate methyltransferases are evolutionary related [], including nicotinamide N-methyltransferase (2.1.1.1 from EC) (NNMT); phenylethanolamine N-methyltransferase (2.1.1.28 from EC) (PNMT); and thioether S-methyltransferase (2.1.1.96 from EC) (TEMT). NNMT catalyzes the N-methylation of nicotinamide and other pyridines to form pyridinium ions. This activity is important for the biotransformation of many drugs and xenobiotic compounds. PNMT catalyzes the last step in catecholamine biosynthesis, the conversion of noradrenalin to adrenalin; and TEMT catalyzes the methylation of dimethyl sulphide into trimethylsulphonium. These three enzymes use S-adenosyl-L-methionine as the methyl donor. They are proteins of 30 to 32 kDa.; GO: 0008168 methyltransferase activity; PDB: 2IIP_C 3ROD_A 2OBF_A 3HCA_B 2ONY_B 3KR1_A 2OPB_B 3KQP_B 2AN4_B 3KQM_A .... |
| >PRK11760 putative 23S rRNA C2498 ribose 2'-O-ribose methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.55 E-value=3.2e-06 Score=78.19 Aligned_cols=95 Identities=22% Similarity=0.259 Sum_probs=69.0
Q ss_pred CCCCCEEEEEecCCCccHHHHHhhhCCCcEEEEEeCChHHHHHHHHHHHcCCCeEEEEccCCCCcccccCCCcEeEEEEe
Q 021911 141 IKPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKRTNVIPIIEDARHPAKYRMLVGMVDVIFSD 220 (305)
Q Consensus 141 ~~~g~~VLDlG~G~G~~t~~la~~~~~~~~V~avD~s~~~~~~l~~~a~~~~nI~~~~~D~~~~~~~~~~~~~fD~V~~d 220 (305)
+.+++++|||||+||.+|..+++. ...|+|||..+ |.......++|+.+..|.....+. ...+|+|+||
T Consensus 209 ~~~g~~vlDLGAsPGGWT~~L~~r---G~~V~AVD~g~-----l~~~L~~~~~V~h~~~d~fr~~p~---~~~vDwvVcD 277 (357)
T PRK11760 209 LAPGMRAVDLGAAPGGWTYQLVRR---GMFVTAVDNGP-----MAQSLMDTGQVEHLRADGFKFRPP---RKNVDWLVCD 277 (357)
T ss_pred cCCCCEEEEeCCCCcHHHHHHHHc---CCEEEEEechh-----cCHhhhCCCCEEEEeccCcccCCC---CCCCCEEEEe
Confidence 468999999999999999999987 24999999765 334445558899999988665432 4689999999
Q ss_pred CCC-hhHHHHHHHHHhccCCCC--cEEEEEEc
Q 021911 221 VAQ-PDQARILALNASYFLKAG--GHFVISIK 249 (305)
Q Consensus 221 ~~~-~~~~~~l~~~a~~~LkpG--G~lv~s~~ 249 (305)
+.+ |. +++. -+.++|..| ..+|+..|
T Consensus 278 mve~P~--rva~-lm~~Wl~~g~cr~aIfnLK 306 (357)
T PRK11760 278 MVEKPA--RVAE-LMAQWLVNGWCREAIFNLK 306 (357)
T ss_pred cccCHH--HHHH-HHHHHHhcCcccEEEEEEE
Confidence 994 33 2232 344566555 35666664
|
|
| >KOG2899 consensus Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.54 E-value=3.5e-07 Score=80.00 Aligned_cols=101 Identities=20% Similarity=0.253 Sum_probs=66.4
Q ss_pred CCCCEEEEEecCCCccHHHHHhhhCCCcEEEEEeCChHHHHHHHHHHHcC----CCeEEEEc------------------
Q 021911 142 KPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKR----TNVIPIIE------------------ 199 (305)
Q Consensus 142 ~~g~~VLDlG~G~G~~t~~la~~~~~~~~V~avD~s~~~~~~l~~~a~~~----~nI~~~~~------------------ 199 (305)
.....+|||||-+|.+|.++|+.+++. .|++|||++ .+++.|.+. ...+..+.
T Consensus 57 f~~~~~LDIGCNsG~lt~~iak~F~~r-~iLGvDID~----~LI~~Ark~~r~~~~~~~~~~~~~~~~~~~~~~~is~~~ 131 (288)
T KOG2899|consen 57 FEPKQALDIGCNSGFLTLSIAKDFGPR-RILGVDIDP----VLIQRARKEIRFPCDHETEVSGKFPASFGVQFGPISQRN 131 (288)
T ss_pred cCcceeEeccCCcchhHHHHHHhhccc-eeeEeeccH----HHHHHHHHhccccccccccccCCCccccccccccccccc
Confidence 346789999999999999999999754 799999999 455555443 11111111
Q ss_pred --------cCCCC-------------cccccCCCcEeEEEEeCC-------C--hhHHHHHHHHHhccCCCCcEEEEEE
Q 021911 200 --------DARHP-------------AKYRMLVGMVDVIFSDVA-------Q--PDQARILALNASYFLKAGGHFVISI 248 (305)
Q Consensus 200 --------D~~~~-------------~~~~~~~~~fD~V~~d~~-------~--~~~~~~l~~~a~~~LkpGG~lv~s~ 248 (305)
|+.+. +...+....||+|+|-.. + .-..+.+. ++.++|.|||+|++.-
T Consensus 132 ~a~~a~t~~~p~n~~f~~~n~vle~~dfl~~~~~~fDiIlcLSiTkWIHLNwgD~GL~~ff~-kis~ll~pgGiLvvEP 209 (288)
T KOG2899|consen 132 EADRAFTTDFPDNVWFQKENYVLESDDFLDMIQPEFDIILCLSITKWIHLNWGDDGLRRFFR-KISSLLHPGGILVVEP 209 (288)
T ss_pred cccccccccCCcchhcccccEEEecchhhhhccccccEEEEEEeeeeEecccccHHHHHHHH-HHHHhhCcCcEEEEcC
Confidence 11000 000122458999998333 2 23556666 9999999999999974
|
|
| >KOG3045 consensus Predicted RNA methylase involved in rRNA processing [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.53 E-value=1.1e-06 Score=77.50 Aligned_cols=110 Identities=19% Similarity=0.145 Sum_probs=78.3
Q ss_pred CCCCEEEEEecCCCccHHHHHhhhCCCcEEEEEeCChHHHHHHHHHHHcCCCeEEEEccCCCCcccccCCCcEeEEEEeC
Q 021911 142 KPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKRTNVIPIIEDARHPAKYRMLVGMVDVIFSDV 221 (305)
Q Consensus 142 ~~g~~VLDlG~G~G~~t~~la~~~~~~~~V~avD~s~~~~~~l~~~a~~~~nI~~~~~D~~~~~~~~~~~~~fD~V~~d~ 221 (305)
.....|.|+|||.+-.++ . ..-.|+++|+.+ .|-.++.+|++..+. .+.++|+++.+.
T Consensus 179 ~~~~vIaD~GCGEakiA~----~--~~~kV~SfDL~a-------------~~~~V~~cDm~~vPl---~d~svDvaV~CL 236 (325)
T KOG3045|consen 179 PKNIVIADFGCGEAKIAS----S--ERHKVHSFDLVA-------------VNERVIACDMRNVPL---EDESVDVAVFCL 236 (325)
T ss_pred cCceEEEecccchhhhhh----c--cccceeeeeeec-------------CCCceeeccccCCcC---ccCcccEEEeeH
Confidence 345789999999976655 2 223799999876 244678899988763 368999998866
Q ss_pred C--ChhHHHHHHHHHhccCCCCcEEEEEEcccccCCCCchhhhHHHHHHHHHHCCCcEeEEe
Q 021911 222 A--QPDQARILALNASYFLKAGGHFVISIKANCIDSTVPAEAVFQSEVKKLQQDQFKPFEQV 281 (305)
Q Consensus 222 ~--~~~~~~~l~~~a~~~LkpGG~lv~s~~~~~i~~~~~~~~v~~~~~~~l~~~Gf~~~e~~ 281 (305)
+ -.+....+. +|.++||+||.|+|... .+.-..- ...+..|...||++....
T Consensus 237 SLMgtn~~df~k-Ea~RiLk~gG~l~IAEv----~SRf~dv---~~f~r~l~~lGF~~~~~d 290 (325)
T KOG3045|consen 237 SLMGTNLADFIK-EANRILKPGGLLYIAEV----KSRFSDV---KGFVRALTKLGFDVKHKD 290 (325)
T ss_pred hhhcccHHHHHH-HHHHHhccCceEEEEeh----hhhcccH---HHHHHHHHHcCCeeeehh
Confidence 6 567777777 99999999999999862 1111111 123566778899887544
|
|
| >PF01564 Spermine_synth: Spermine/spermidine synthase; InterPro: IPR001045 Synonym(s): Spermidine aminopropyltransferase A group of polyamine biosynthetic enzymes involved in the fifth (last) step in the biosynthesis of spermidine from arginine and methionine which includes; spermidine synthase (2 | Back alignment and domain information |
|---|
Probab=98.53 E-value=3.7e-06 Score=75.35 Aligned_cols=147 Identities=20% Similarity=0.216 Sum_probs=94.8
Q ss_pred CCCEEEEEecCCCccHHHHHhhhCCCcEEEEEeCChHHHHHHHHHHH------cCCCeEEEEccCCCCcccccCCC-cEe
Q 021911 143 PGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAK------KRTNVIPIIEDARHPAKYRMLVG-MVD 215 (305)
Q Consensus 143 ~g~~VLDlG~G~G~~t~~la~~~~~~~~V~avD~s~~~~~~l~~~a~------~~~nI~~~~~D~~~~~~~~~~~~-~fD 215 (305)
...+||-||-|.|..+..+.+.- +-.+|+.||+++..++-+.+... ..+++++++.|+....... .. +||
T Consensus 76 ~p~~VLiiGgG~G~~~~ell~~~-~~~~i~~VEiD~~Vv~~a~~~f~~~~~~~~d~r~~i~~~Dg~~~l~~~--~~~~yD 152 (246)
T PF01564_consen 76 NPKRVLIIGGGDGGTARELLKHP-PVESITVVEIDPEVVELARKYFPEFSEGLDDPRVRIIIGDGRKFLKET--QEEKYD 152 (246)
T ss_dssp ST-EEEEEESTTSHHHHHHTTST-T-SEEEEEES-HHHHHHHHHHTHHHHTTGGSTTEEEEESTHHHHHHTS--SST-EE
T ss_pred CcCceEEEcCCChhhhhhhhhcC-CcceEEEEecChHHHHHHHHhchhhccccCCCceEEEEhhhHHHHHhc--cCCccc
Confidence 46899999999999999998773 34589999999944433333221 1268999999997765432 34 899
Q ss_pred EEEEeCCChh-------HHHHHHHHHhccCCCCcEEEEEEcccccCCCCchhhhHHHHHHHHHHCCCcEeE--EeecCCC
Q 021911 216 VIFSDVAQPD-------QARILALNASYFLKAGGHFVISIKANCIDSTVPAEAVFQSEVKKLQQDQFKPFE--QVTLEPF 286 (305)
Q Consensus 216 ~V~~d~~~~~-------~~~~l~~~a~~~LkpGG~lv~s~~~~~i~~~~~~~~v~~~~~~~l~~~Gf~~~e--~~~l~p~ 286 (305)
+|++|...|. ..+.+. .+.+.|+|+|.+++.. .+.. .....+....+.+++. |.... ...+..|
T Consensus 153 vIi~D~~dp~~~~~~l~t~ef~~-~~~~~L~~~Gv~v~~~--~~~~---~~~~~~~~i~~tl~~~-F~~v~~~~~~vP~~ 225 (246)
T PF01564_consen 153 VIIVDLTDPDGPAPNLFTREFYQ-LCKRRLKPDGVLVLQA--GSPF---LHPELFKSILKTLRSV-FPQVKPYTAYVPSY 225 (246)
T ss_dssp EEEEESSSTTSCGGGGSSHHHHH-HHHHHEEEEEEEEEEE--EETT---TTHHHHHHHHHHHHTT-SSEEEEEEEECTTS
T ss_pred EEEEeCCCCCCCcccccCHHHHH-HHHhhcCCCcEEEEEc--cCcc---cchHHHHHHHHHHHHh-CCceEEEEEEcCee
Confidence 9999888432 345555 8999999999999976 2221 1233445556667666 44333 2345556
Q ss_pred CCc-eEEEEEEEcC
Q 021911 287 ERD-HACVVGGYRM 299 (305)
Q Consensus 287 ~~~-~~~vv~~~~~ 299 (305)
... +.++++++..
T Consensus 226 ~~~~~~~~~~s~~~ 239 (246)
T PF01564_consen 226 GSGWWSFASASKDI 239 (246)
T ss_dssp CSSEEEEEEEESST
T ss_pred cccceeEEEEeCCC
Confidence 665 4455555544
|
5.1.16 from EC), spermine synthase (2.5.1.22 from EC) and putrescine N-methyltransferase (2.1.1.53 from EC) []. The Thermotoga maritima spermidine synthase monomer consists of two domains: an N-terminal domain composed of six beta-strands, and a Rossmann-like C- terminal domain []. The larger C-terminal catalytic core domain consists of a seven-stranded beta-sheet flanked by nine alpha helices. This domain resembles a topology observed in a number of nucleotide and dinucleotide-binding enzymes, and in S-adenosyl-L-methionine (AdoMet)- dependent methyltransferase (MTases) [].; GO: 0003824 catalytic activity; PDB: 2E5W_C 2ZSU_E 2O0L_B 2O05_B 2O06_B 2O07_B 3RW9_B 2PWP_A 2HTE_B 3RIE_B .... |
| >PF00891 Methyltransf_2: O-methyltransferase; InterPro: IPR001077 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals | Back alignment and domain information |
|---|
Probab=98.52 E-value=2.3e-06 Score=76.14 Aligned_cols=98 Identities=20% Similarity=0.192 Sum_probs=72.1
Q ss_pred cCCCCCCEEEEEecCCCccHHHHHhhhCCCcEEEEEeCChHHHHHHHHHHHcCCCeEEEEccCCCCcccccCCCcEeEEE
Q 021911 139 IWIKPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKRTNVIPIIEDARHPAKYRMLVGMVDVIF 218 (305)
Q Consensus 139 ~~~~~g~~VLDlG~G~G~~t~~la~~~~~~~~V~avD~s~~~~~~l~~~a~~~~nI~~~~~D~~~~~~~~~~~~~fD~V~ 218 (305)
.+..+..+|||||+|+|.++..+++.. |..+++.+|+ | ..++.+++.++|+++..|+.+.. +. +|+|+
T Consensus 96 ~d~~~~~~vvDvGGG~G~~~~~l~~~~-P~l~~~v~Dl-p----~v~~~~~~~~rv~~~~gd~f~~~-----P~-~D~~~ 163 (241)
T PF00891_consen 96 FDFSGFKTVVDVGGGSGHFAIALARAY-PNLRATVFDL-P----EVIEQAKEADRVEFVPGDFFDPL-----PV-ADVYL 163 (241)
T ss_dssp STTTTSSEEEEET-TTSHHHHHHHHHS-TTSEEEEEE--H----HHHCCHHHTTTEEEEES-TTTCC-----SS-ESEEE
T ss_pred ccccCccEEEeccCcchHHHHHHHHHC-CCCcceeecc-H----hhhhccccccccccccccHHhhh-----cc-cccee
Confidence 355666899999999999999999986 7889999999 5 34444444679999999998332 34 99998
Q ss_pred EeCC----ChhHHHHHHHHHhccCCCC--cEEEEEE
Q 021911 219 SDVA----QPDQARILALNASYFLKAG--GHFVISI 248 (305)
Q Consensus 219 ~d~~----~~~~~~~l~~~a~~~LkpG--G~lv~s~ 248 (305)
+.-. .+++...+..+++..|+|| |+|+|..
T Consensus 164 l~~vLh~~~d~~~~~iL~~~~~al~pg~~g~llI~e 199 (241)
T PF00891_consen 164 LRHVLHDWSDEDCVKILRNAAAALKPGKDGRLLIIE 199 (241)
T ss_dssp EESSGGGS-HHHHHHHHHHHHHHSEECTTEEEEEEE
T ss_pred eehhhhhcchHHHHHHHHHHHHHhCCCCCCeEEEEe
Confidence 7433 2344444444999999999 9999987
|
The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This domain includes a range of O-methyltransferases some of which utilise S-adenosyl methionine as substrate []. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. In eukaryotes, DNA methylation has been implicated in the control of several cellular processes, including differentiation, gene regulation, and embryonic development. O-methyltransferases have a common catalytic domain structure, which might be universal among S-adenosyl-L-methionine (AdoMet)-dependent methyltransferases []. Comparative analysis of the predicted amino acid sequences of a number of plant O-methyltransferase cDNA clones show that they share some 32-71% sequence identity, and can be grouped according to the different compounds they utilise as substrates [].; GO: 0008171 O-methyltransferase activity; PDB: 1FPQ_A 1FP1_D 3P9K_B 3P9I_D 3P9C_A 3I53_A 3I5U_A 3I64_A 3I58_A 1ZG3_A .... |
| >COG0116 Predicted N6-adenine-specific DNA methylase [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=98.49 E-value=9.9e-07 Score=82.62 Aligned_cols=128 Identities=20% Similarity=0.238 Sum_probs=92.4
Q ss_pred eeeeeecC---chhhHHHHHHHccccccCCCCCCEEEEEecCCCccHHHHHhhhCC------------------------
Q 021911 115 KVEYRIWN---PFRSKLAAAVLGGVDNIWIKPGARVLYLGAASGTTVSHVSDIVGP------------------------ 167 (305)
Q Consensus 115 ~~~~~~~~---~~~s~l~a~ll~~l~~~~~~~g~~VLDlG~G~G~~t~~la~~~~~------------------------ 167 (305)
+-.||+.+ |....|++.|+. |. ..+++..++|.-||+|++.+..|.+...
T Consensus 163 kRGyR~~~g~ApLketLAaAil~-la--gw~~~~pl~DPmCGSGTi~IEAAl~~~niAPg~~R~~~f~~w~~~~~~lw~~ 239 (381)
T COG0116 163 KRGYRVYDGPAPLKETLAAAILL-LA--GWKPDEPLLDPMCGSGTILIEAALIAANIAPGLNRRFGFEFWDWFDKDLWDK 239 (381)
T ss_pred hccccccCCCCCchHHHHHHHHH-Hc--CCCCCCccccCCCCccHHHHHHHHhccccCCccccccchhhhhhccHHHHHH
Confidence 33555554 667788888874 33 4566789999999999999999877421
Q ss_pred -------Cc-------EEEEEeCChHHHHHHHHHHHcC---CCeEEEEccCCCCcccccCCCcEeEEEEeCCC-------
Q 021911 168 -------NG-------VVYAVEFSHRSGRDLVNMAKKR---TNVIPIIEDARHPAKYRMLVGMVDVIFSDVAQ------- 223 (305)
Q Consensus 168 -------~~-------~V~avD~s~~~~~~l~~~a~~~---~nI~~~~~D~~~~~~~~~~~~~fD~V~~d~~~------- 223 (305)
.. .++++|+++++++.+..++..- +.|+|.+.|++.+.+. ...+|+||||+|.
T Consensus 240 ~~~ea~~~a~~~~~~~~~~G~Did~r~i~~Ak~NA~~AGv~d~I~f~~~d~~~l~~~---~~~~gvvI~NPPYGeRlg~~ 316 (381)
T COG0116 240 LREEAEERARRGKELPIIYGSDIDPRHIEGAKANARAAGVGDLIEFKQADATDLKEP---LEEYGVVISNPPYGERLGSE 316 (381)
T ss_pred HHHHHHHHHhhcCccceEEEecCCHHHHHHHHHHHHhcCCCceEEEEEcchhhCCCC---CCcCCEEEeCCCcchhcCCh
Confidence 11 3779999997777766666654 6799999999887643 2689999999991
Q ss_pred ---hhHHHHHHHHHhccCCCCcEEEEEE
Q 021911 224 ---PDQARILALNASYFLKAGGHFVISI 248 (305)
Q Consensus 224 ---~~~~~~l~~~a~~~LkpGG~lv~s~ 248 (305)
....+.|...+++.++.-..+++++
T Consensus 317 ~~v~~LY~~fg~~lk~~~~~ws~~v~tt 344 (381)
T COG0116 317 ALVAKLYREFGRTLKRLLAGWSRYVFTT 344 (381)
T ss_pred hhHHHHHHHHHHHHHHHhcCCceEEEEc
Confidence 1123334435668888888888886
|
|
| >KOG3420 consensus Predicted RNA methylase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.49 E-value=1.8e-07 Score=75.60 Aligned_cols=95 Identities=18% Similarity=0.156 Sum_probs=71.8
Q ss_pred chhhHHHHHHHccccccC-CCCCCEEEEEecCCCccHHHHHhhhCCCcEEEEEeCChHHHHHHHHHHHcC-CCeEEEEcc
Q 021911 123 PFRSKLAAAVLGGVDNIW-IKPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKR-TNVIPIIED 200 (305)
Q Consensus 123 ~~~s~l~a~ll~~l~~~~-~~~g~~VLDlG~G~G~~t~~la~~~~~~~~V~avD~s~~~~~~l~~~a~~~-~nI~~~~~D 200 (305)
|.++.+++.++..+.+.. .-.+++++|||||.|.++...+.. ..-.|+++|++|.+++-+..++.+- -++.+.++|
T Consensus 27 ~T~p~iAasM~~~Ih~TygdiEgkkl~DLgcgcGmLs~a~sm~--~~e~vlGfDIdpeALEIf~rNaeEfEvqidlLqcd 104 (185)
T KOG3420|consen 27 PTRPHIAASMLYTIHNTYGDIEGKKLKDLGCGCGMLSIAFSMP--KNESVLGFDIDPEALEIFTRNAEEFEVQIDLLQCD 104 (185)
T ss_pred CCcHHHHHHHHHHHHhhhccccCcchhhhcCchhhhHHHhhcC--CCceEEeeecCHHHHHHHhhchHHhhhhhheeeee
Confidence 447788888887776442 256899999999999998665543 3458999999996665555555443 478899999
Q ss_pred CCCCcccccCCCcEeEEEEeCC
Q 021911 201 ARHPAKYRMLVGMVDVIFSDVA 222 (305)
Q Consensus 201 ~~~~~~~~~~~~~fD~V~~d~~ 222 (305)
+.++... ...||.++.|+|
T Consensus 105 ildle~~---~g~fDtaviNpp 123 (185)
T KOG3420|consen 105 ILDLELK---GGIFDTAVINPP 123 (185)
T ss_pred ccchhcc---CCeEeeEEecCC
Confidence 9887643 378999999999
|
|
| >PF02527 GidB: rRNA small subunit methyltransferase G; InterPro: IPR003682 This entry represents a rRNA small subunit methyltransferase G | Back alignment and domain information |
|---|
Probab=98.49 E-value=3.9e-06 Score=71.80 Aligned_cols=124 Identities=22% Similarity=0.215 Sum_probs=85.5
Q ss_pred EEEEEecCCCccHHHHHhhhCCCcEEEEEeCChHHHHHHHHHHHcC--CCeEEEEccCCCCcccccCCCcEeEEEEeCCC
Q 021911 146 RVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKR--TNVIPIIEDARHPAKYRMLVGMVDVIFSDVAQ 223 (305)
Q Consensus 146 ~VLDlG~G~G~~t~~la~~~~~~~~V~avD~s~~~~~~l~~~a~~~--~nI~~~~~D~~~~~~~~~~~~~fD~V~~d~~~ 223 (305)
+|||+|+|.|.-...+|-.. |+.+|+-+|.+.+.+.-+...+.+- +|+++++..+.+. .....||+|++-+..
T Consensus 51 ~~lDiGSGaGfPGipLaI~~-p~~~~~LvEs~~KK~~FL~~~~~~L~L~nv~v~~~R~E~~----~~~~~fd~v~aRAv~ 125 (184)
T PF02527_consen 51 KVLDIGSGAGFPGIPLAIAR-PDLQVTLVESVGKKVAFLKEVVRELGLSNVEVINGRAEEP----EYRESFDVVTARAVA 125 (184)
T ss_dssp EEEEETSTTTTTHHHHHHH--TTSEEEEEESSHHHHHHHHHHHHHHT-SSEEEEES-HHHT----TTTT-EEEEEEESSS
T ss_pred eEEecCCCCCChhHHHHHhC-CCCcEEEEeCCchHHHHHHHHHHHhCCCCEEEEEeeeccc----ccCCCccEEEeehhc
Confidence 89999999999999999775 7889999999987655555444433 7899999988771 125799999998887
Q ss_pred hhHHHHHHHHHhccCCCCcEEEEEEcccccCCCCchhhhHHHHHHHHHHCCCcEeEEeec
Q 021911 224 PDQARILALNASYFLKAGGHFVISIKANCIDSTVPAEAVFQSEVKKLQQDQFKPFEQVTL 283 (305)
Q Consensus 224 ~~~~~~l~~~a~~~LkpGG~lv~s~~~~~i~~~~~~~~v~~~~~~~l~~~Gf~~~e~~~l 283 (305)
+.. .++. -+..+|+++|++++.-- .+...-..+....++..++++..+..+
T Consensus 126 ~l~-~l~~-~~~~~l~~~G~~l~~KG-------~~~~~El~~~~~~~~~~~~~~~~v~~~ 176 (184)
T PF02527_consen 126 PLD-KLLE-LARPLLKPGGRLLAYKG-------PDAEEELEEAKKAWKKLGLKVLSVPEF 176 (184)
T ss_dssp SHH-HHHH-HHGGGEEEEEEEEEEES-------S--HHHHHTHHHHHHCCCEEEEEEEEE
T ss_pred CHH-HHHH-HHHHhcCCCCEEEEEcC-------CChHHHHHHHHhHHHHhCCEEeeeccc
Confidence 653 4444 78899999999988751 111122222334455566666665544
|
Previously identified as a glucose-inhibited division protein B that appears to be present and in a single copy in all complete eubacterial genomes so far sequenced. Specifically methylates the N7 position of a guanosine in 16S rRNA [, , ].; GO: 0008649 rRNA methyltransferase activity, 0006364 rRNA processing, 0005737 cytoplasm; PDB: 1XDZ_A 3G88_A 3G8A_B 3G89_B 3G8B_B 1JSX_A. |
| >PF12147 Methyltransf_20: Putative methyltransferase; InterPro: IPR022744 This C-terminal region is found in bacteria and eukaryotes and is approximately 110 amino acids in length | Back alignment and domain information |
|---|
Probab=98.46 E-value=5.9e-06 Score=74.52 Aligned_cols=105 Identities=17% Similarity=0.122 Sum_probs=82.1
Q ss_pred CCCEEEEEecCCCccHHHHHhhhCC-CcEEEEEeCChHHHHHHHHHHHcC--CCe-EEEEccCCCCcccccCCCcEeEEE
Q 021911 143 PGARVLYLGAASGTTVSHVSDIVGP-NGVVYAVEFSHRSGRDLVNMAKKR--TNV-IPIIEDARHPAKYRMLVGMVDVIF 218 (305)
Q Consensus 143 ~g~~VLDlG~G~G~~t~~la~~~~~-~~~V~avD~s~~~~~~l~~~a~~~--~nI-~~~~~D~~~~~~~~~~~~~fD~V~ 218 (305)
..-+||||+||+|...+.+...... .-+|.-.|+|+..++.-.++++++ .+| .|.+.|+.+...+..+....|+++
T Consensus 135 ~pvrIlDIAaG~GRYvlDal~~~~~~~~~i~LrDys~~Nv~~g~~li~~~gL~~i~~f~~~dAfd~~~l~~l~p~P~l~i 214 (311)
T PF12147_consen 135 RPVRILDIAAGHGRYVLDALEKHPERPDSILLRDYSPINVEKGRALIAERGLEDIARFEQGDAFDRDSLAALDPAPTLAI 214 (311)
T ss_pred CceEEEEeccCCcHHHHHHHHhCCCCCceEEEEeCCHHHHHHHHHHHHHcCCccceEEEecCCCCHhHhhccCCCCCEEE
Confidence 3479999999999999988877643 257888999998888888888776 555 999999999877766667789888
Q ss_pred EeCC---Chh---HHHHHHHHHhccCCCCcEEEEEE
Q 021911 219 SDVA---QPD---QARILALNASYFLKAGGHFVISI 248 (305)
Q Consensus 219 ~d~~---~~~---~~~~l~~~a~~~LkpGG~lv~s~ 248 (305)
+.-. .+| -.+.+. -+...|.|||+|++.-
T Consensus 215 VsGL~ElF~Dn~lv~~sl~-gl~~al~pgG~lIyTg 249 (311)
T PF12147_consen 215 VSGLYELFPDNDLVRRSLA-GLARALEPGGYLIYTG 249 (311)
T ss_pred EecchhhCCcHHHHHHHHH-HHHHHhCCCcEEEEcC
Confidence 7544 222 233454 7889999999999985
|
It is found in association with PF00561 from PFAM. Many members are annotated as being lysophospholipases, and others as alpha-beta hydrolase fold-containing proteins. This domain belongs to the S-adenosyl-L-methionine-dependent methyltransferases superfamily. |
| >COG0421 SpeE Spermidine synthase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.45 E-value=3.8e-06 Score=76.49 Aligned_cols=100 Identities=27% Similarity=0.351 Sum_probs=78.9
Q ss_pred CCCCCCEEEEEecCCCccHHHHHhhhCCCcEEEEEeCChHHHHHHHHHHHcC----------CCeEEEEccCCCCccccc
Q 021911 140 WIKPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKR----------TNVIPIIEDARHPAKYRM 209 (305)
Q Consensus 140 ~~~~g~~VLDlG~G~G~~t~~la~~~~~~~~V~avD~s~~~~~~l~~~a~~~----------~nI~~~~~D~~~~~~~~~ 209 (305)
+..| .+||-||-|.|.++..++++. +--+++.||+++ ++++.+++. +++..+..|..++...
T Consensus 74 h~~p-k~VLiiGgGdG~tlRevlkh~-~ve~i~~VEID~----~Vi~~ar~~l~~~~~~~~dpRv~i~i~Dg~~~v~~-- 145 (282)
T COG0421 74 HPNP-KRVLIIGGGDGGTLREVLKHL-PVERITMVEIDP----AVIELARKYLPEPSGGADDPRVEIIIDDGVEFLRD-- 145 (282)
T ss_pred CCCC-CeEEEECCCccHHHHHHHhcC-CcceEEEEEcCH----HHHHHHHHhccCcccccCCCceEEEeccHHHHHHh--
Confidence 5566 699999999999999999985 345899999999 666666553 5788889998776543
Q ss_pred CCCcEeEEEEeCCCh-------hHHHHHHHHHhccCCCCcEEEEEE
Q 021911 210 LVGMVDVIFSDVAQP-------DQARILALNASYFLKAGGHFVISI 248 (305)
Q Consensus 210 ~~~~fD~V~~d~~~~-------~~~~~l~~~a~~~LkpGG~lv~s~ 248 (305)
...+||+|++|...| ...+.+. .+++.|+++|.++..+
T Consensus 146 ~~~~fDvIi~D~tdp~gp~~~Lft~eFy~-~~~~~L~~~Gi~v~q~ 190 (282)
T COG0421 146 CEEKFDVIIVDSTDPVGPAEALFTEEFYE-GCRRALKEDGIFVAQA 190 (282)
T ss_pred CCCcCCEEEEcCCCCCCcccccCCHHHHH-HHHHhcCCCcEEEEec
Confidence 134899999988755 2455565 9999999999999985
|
|
| >PF11968 DUF3321: Putative methyltransferase (DUF3321); InterPro: IPR021867 This family is conserved in fungi and is annotated as being a nucleolar protein | Back alignment and domain information |
|---|
Probab=98.42 E-value=4.3e-06 Score=72.44 Aligned_cols=120 Identities=18% Similarity=0.140 Sum_probs=81.3
Q ss_pred CEEEEEecCCCccHHHHHhhhCCCcEEEEEeCChHHHHHHHHHHHcCCCeEEEEccCCCCcccccCCCcEeEEEE-----
Q 021911 145 ARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKRTNVIPIIEDARHPAKYRMLVGMVDVIFS----- 219 (305)
Q Consensus 145 ~~VLDlG~G~G~~t~~la~~~~~~~~V~avD~s~~~~~~l~~~a~~~~nI~~~~~D~~~~~~~~~~~~~fD~V~~----- 219 (305)
.++||+||=+-......... ..|++||+++. .-.+.++|+.+.+......+.||+|.+
T Consensus 53 lrlLEVGals~~N~~s~~~~----fdvt~IDLns~-------------~~~I~qqDFm~rplp~~~~e~FdvIs~SLVLN 115 (219)
T PF11968_consen 53 LRLLEVGALSTDNACSTSGW----FDVTRIDLNSQ-------------HPGILQQDFMERPLPKNESEKFDVISLSLVLN 115 (219)
T ss_pred ceEEeecccCCCCcccccCc----eeeEEeecCCC-------------CCCceeeccccCCCCCCcccceeEEEEEEEEe
Confidence 69999999765544443333 36999999871 223567888665432223578999876
Q ss_pred eCCChhHHHHHHHHHhccCCCCcE-----EEEEEcccccCCCCchhhhHHHHHHHHHHCCCcEeEEeec
Q 021911 220 DVAQPDQARILALNASYFLKAGGH-----FVISIKANCIDSTVPAEAVFQSEVKKLQQDQFKPFEQVTL 283 (305)
Q Consensus 220 d~~~~~~~~~l~~~a~~~LkpGG~-----lv~s~~~~~i~~~~~~~~v~~~~~~~l~~~Gf~~~e~~~l 283 (305)
.+|.|.+.-.+..+++++|+|.|. |+++++..|+........ ......|...||..++....
T Consensus 116 fVP~p~~RG~Ml~r~~~fL~~~g~~~~~~LFlVlP~~Cv~NSRy~~~--~~l~~im~~LGf~~~~~~~~ 182 (219)
T PF11968_consen 116 FVPDPKQRGEMLRRAHKFLKPPGLSLFPSLFLVLPLPCVTNSRYMTE--ERLREIMESLGFTRVKYKKS 182 (219)
T ss_pred eCCCHHHHHHHHHHHHHHhCCCCccCcceEEEEeCchHhhcccccCH--HHHHHHHHhCCcEEEEEEec
Confidence 445777776666699999999999 999999888543322211 12235567899998887533
|
|
| >COG4798 Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.40 E-value=2.8e-06 Score=72.06 Aligned_cols=141 Identities=23% Similarity=0.244 Sum_probs=83.8
Q ss_pred cCCCCCCEEEEEecCCCccHHHHHhhhCCCcEEEEEeCCh------HHHHHHHHHHHc--CCCeEEEEccCCCCcccccC
Q 021911 139 IWIKPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSH------RSGRDLVNMAKK--RTNVIPIIEDARHPAKYRML 210 (305)
Q Consensus 139 ~~~~~g~~VLDlG~G~G~~t~~la~~~~~~~~V~avD~s~------~~~~~l~~~a~~--~~nI~~~~~D~~~~~~~~~~ 210 (305)
..++|+++|+|+-.|.|.+|..++..+++++.||++-..+ +....+...+++ ..|++.+-.+..... .
T Consensus 44 aGlkpg~tVid~~PGgGy~TrI~s~~vgp~G~Vy~~~p~e~~~~~~~~~~r~~~~~~e~~~aN~e~~~~~~~A~~----~ 119 (238)
T COG4798 44 AGLKPGATVIDLIPGGGYFTRIFSPAVGPKGKVYAYVPAELTKFAKREGPRLNAAAREPVYANVEVIGKPLVALG----A 119 (238)
T ss_pred eccCCCCEEEEEecCCccHhhhhchhcCCceeEEEecchhhcccccchhhhhhhhhhhhhhhhhhhhCCcccccC----C
Confidence 3689999999999999999999999999999999983322 111122222222 146665554444332 1
Q ss_pred CCcEeEEEE--------eCC-ChhHHHHHHHHHhccCCCCcEEEEEEcccccCCCCchhh----hH-HHHHHHHHHCCCc
Q 021911 211 VGMVDVIFS--------DVA-QPDQARILALNASYFLKAGGHFVISIKANCIDSTVPAEA----VF-QSEVKKLQQDQFK 276 (305)
Q Consensus 211 ~~~fD~V~~--------d~~-~~~~~~~l~~~a~~~LkpGG~lv~s~~~~~i~~~~~~~~----v~-~~~~~~l~~~Gf~ 276 (305)
++..|+++. +-. ++.....+...+++.|||||.+++......-.+...... +- +..+...+..||+
T Consensus 120 pq~~d~~~~~~~yhdmh~k~i~~~~A~~vna~vf~~LKPGGv~~V~dH~a~pG~~~~dt~~~~ri~~a~V~a~veaaGFk 199 (238)
T COG4798 120 PQKLDLVPTAQNYHDMHNKNIHPATAAKVNAAVFKALKPGGVYLVEDHRADPGSGLSDTITLHRIDPAVVIAEVEAAGFK 199 (238)
T ss_pred CCcccccccchhhhhhhccccCcchHHHHHHHHHHhcCCCcEEEEEeccccCCCChhhhhhhcccChHHHHHHHHhhcce
Confidence 234444443 111 455666666689999999999998763211111111100 00 1114555678999
Q ss_pred EeEEeec
Q 021911 277 PFEQVTL 283 (305)
Q Consensus 277 ~~e~~~l 283 (305)
+.-.-++
T Consensus 200 l~aeS~i 206 (238)
T COG4798 200 LEAESEI 206 (238)
T ss_pred eeeeehh
Confidence 8765444
|
|
| >COG0030 KsgA Dimethyladenosine transferase (rRNA methylation) [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.39 E-value=2.7e-06 Score=76.15 Aligned_cols=87 Identities=21% Similarity=0.169 Sum_probs=67.6
Q ss_pred CCCCCCEEEEEecCCCccHHHHHhhhCCCcEEEEEeCChHHHHHHHHHHHcCCCeEEEEccCCCCcccccCCCcEeEEEE
Q 021911 140 WIKPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKRTNVIPIIEDARHPAKYRMLVGMVDVIFS 219 (305)
Q Consensus 140 ~~~~g~~VLDlG~G~G~~t~~la~~~~~~~~V~avD~s~~~~~~l~~~a~~~~nI~~~~~D~~~~~~~~~~~~~fD~V~~ 219 (305)
.+.+++.|||||+|.|.+|..|++.. ..|+|||++++.+..+.+......|++.++.|+...+.... ..++.|++
T Consensus 27 ~~~~~d~VlEIGpG~GaLT~~Ll~~~---~~v~aiEiD~~l~~~L~~~~~~~~n~~vi~~DaLk~d~~~l--~~~~~vVa 101 (259)
T COG0030 27 NISPGDNVLEIGPGLGALTEPLLERA---ARVTAIEIDRRLAEVLKERFAPYDNLTVINGDALKFDFPSL--AQPYKVVA 101 (259)
T ss_pred CCCCCCeEEEECCCCCHHHHHHHhhc---CeEEEEEeCHHHHHHHHHhcccccceEEEeCchhcCcchhh--cCCCEEEE
Confidence 57778999999999999999999984 37999999996655555555444799999999987753211 17899999
Q ss_pred eCCChhHHHHHH
Q 021911 220 DVAQPDQARILA 231 (305)
Q Consensus 220 d~~~~~~~~~l~ 231 (305)
|.|...-..++.
T Consensus 102 NlPY~Isspii~ 113 (259)
T COG0030 102 NLPYNISSPILF 113 (259)
T ss_pred cCCCcccHHHHH
Confidence 999555555554
|
|
| >PF01739 CheR: CheR methyltransferase, SAM binding domain; InterPro: IPR022642 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals | Back alignment and domain information |
|---|
Probab=98.39 E-value=1.5e-06 Score=75.14 Aligned_cols=98 Identities=20% Similarity=0.234 Sum_probs=60.4
Q ss_pred CCCEEEEEecCCCccH----HHHHhhh----CCCcEEEEEeCChHHHHHHHHHHHcC-----------------------
Q 021911 143 PGARVLYLGAASGTTV----SHVSDIV----GPNGVVYAVEFSHRSGRDLVNMAKKR----------------------- 191 (305)
Q Consensus 143 ~g~~VLDlG~G~G~~t----~~la~~~----~~~~~V~avD~s~~~~~~l~~~a~~~----------------------- 191 (305)
+.-+|+-+||++|-=. ..+.+.. .-..+|+|+|+|+.++ +.|++-
T Consensus 31 ~~lrIWSagCStGeE~YSlAmll~e~~~~~~~~~~~I~atDi~~~~L----~~Ar~G~Y~~~~~~~~~~~~~~ryf~~~~ 106 (196)
T PF01739_consen 31 RPLRIWSAGCSTGEEPYSLAMLLLELLPGALGWDFRILATDISPSAL----EKARAGIYPERSLRGLPPAYLRRYFTERD 106 (196)
T ss_dssp S-EEEEETT-TTTHHHHHHHHHHHHHH-S-TT-SEEEEEEES-HHHH----HHHHHTEEEGGGGTTS-HHHHHHHEEEE-
T ss_pred CCeEEEECCCCCChhHHHHHHHHHHHhcccCCCceEEEEEECCHHHH----HHHHhCCCCHHHHhhhHHHHHHHhccccC
Confidence 4579999999999733 3333311 1145999999999544 434210
Q ss_pred -----------CCeEEEEccCCCCcccccCCCcEeEEEEeCC-----ChhHHHHHHHHHhccCCCCcEEEEEE
Q 021911 192 -----------TNVIPIIEDARHPAKYRMLVGMVDVIFSDVA-----QPDQARILALNASYFLKAGGHFVISI 248 (305)
Q Consensus 192 -----------~nI~~~~~D~~~~~~~~~~~~~fD~V~~d~~-----~~~~~~~l~~~a~~~LkpGG~lv~s~ 248 (305)
.+|.|.+.|+.+.++ ....||+|+|-.. .+.|.+++. ..++.|+|||+|++..
T Consensus 107 ~~~~~v~~~lr~~V~F~~~NL~~~~~---~~~~fD~I~CRNVlIYF~~~~~~~vl~-~l~~~L~pgG~L~lG~ 175 (196)
T PF01739_consen 107 GGGYRVKPELRKMVRFRRHNLLDPDP---PFGRFDLIFCRNVLIYFDPETQQRVLR-RLHRSLKPGGYLFLGH 175 (196)
T ss_dssp CCCTTE-HHHHTTEEEEE--TT-S---------EEEEEE-SSGGGS-HHHHHHHHH-HHGGGEEEEEEEEE-T
T ss_pred CCceeEChHHcCceEEEecccCCCCc---ccCCccEEEecCEEEEeCHHHHHHHHH-HHHHHcCCCCEEEEec
Confidence 468899999887222 2579999999444 456777777 9999999999999975
|
The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Flagellated bacteria swim towards favourable chemicals and away from deleterious ones. Sensing of chemoeffector gradients involves chemotaxis receptors, transmembrane (TM) proteins that detect stimuli through their periplasmic domains and transduce the signals via their cytoplasmic domains []. Signalling outputs from these receptors are influenced both by the binding of the chemoeffector ligand to their periplasmic domains and by methylation of specific glutamate residues on their cytoplasmic domains. Methylation is catalysed by CheR, an S-adenosylmethionine-dependent methyltransferase [], which reversibly methylates specific glutamate residues within a coiled coil region, to form gamma-glutamyl methyl ester residues [, ]. The structure of the Salmonella typhimurium chemotaxis receptor methyltransferase CheR, bound to S-adenosylhomocysteine, has been determined to a resolution of 2.0 A []. The structure reveals CheR to be a two-domain protein, with a smaller N-terminal helical domain linked via a single polypeptide connection to a larger C-terminal alpha/beta domain. The C-terminal domain has the characteristics of a nucleotide-binding fold, with an insertion of a small anti-parallel beta-sheet subdomain. The S-adenosylhomocysteine-binding site is formed mainly by the large domain, with contributions from residues within the N-terminal domain and the linker region []. CheR proteins are part of the chemotaxis signaling mechanism which methylates the chemotaxis receptor at specific glutamate residues. This entry refers to the C-terminal SAM-binding domain of the CherR-type MCP methyltransferases, which are found in bacteria, archaea and green plants. This entry is found in association with PF03705 from PFAM. ; PDB: 1AF7_A 1BC5_A. |
| >PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.38 E-value=5e-06 Score=85.18 Aligned_cols=123 Identities=16% Similarity=0.136 Sum_probs=82.7
Q ss_pred CchhhHHHHHHHccccccCCCCCCEEEEEecCCCccHHHHHhhhC-----------------------------------
Q 021911 122 NPFRSKLAAAVLGGVDNIWIKPGARVLYLGAASGTTVSHVSDIVG----------------------------------- 166 (305)
Q Consensus 122 ~~~~s~l~a~ll~~l~~~~~~~g~~VLDlG~G~G~~t~~la~~~~----------------------------------- 166 (305)
.|.+..|++.++. +..+ .+++..++|.+||+|++.+..|.+..
T Consensus 171 Apl~etlAaa~l~-~a~w-~~~~~~l~DP~CGSGTilIEAa~~~~~~~pg~~r~~f~f~~~~~~~~~~w~~~~~~a~~~~ 248 (702)
T PRK11783 171 APLKENLAAAILL-RSGW-PQEGTPLLDPMCGSGTLLIEAAMMAADIAPGLHRERWGFSGWLGHDEALWQELLEEAQERA 248 (702)
T ss_pred CCCcHHHHHHHHH-HcCC-CCCCCeEEccCCCccHHHHHHHHHHhcCCCCccccccccccCCCCCHHHHHHHHHHHHHHH
Confidence 4677889998875 2221 25678999999999999998886411
Q ss_pred ------CCcEEEEEeCChHHHHHHHHHHHcC---CCeEEEEccCCCCcccccCCCcEeEEEEeCCC-------hhHHHH-
Q 021911 167 ------PNGVVYAVEFSHRSGRDLVNMAKKR---TNVIPIIEDARHPAKYRMLVGMVDVIFSDVAQ-------PDQARI- 229 (305)
Q Consensus 167 ------~~~~V~avD~s~~~~~~l~~~a~~~---~nI~~~~~D~~~~~~~~~~~~~fD~V~~d~~~-------~~~~~~- 229 (305)
....++++|+++.+++.+..+++.. ..|.+++.|+.+..... ..++||+|++|+|. .+..++
T Consensus 249 ~~~~~~~~~~i~G~Did~~av~~A~~N~~~~g~~~~i~~~~~D~~~~~~~~-~~~~~d~IvtNPPYg~r~~~~~~l~~lY 327 (702)
T PRK11783 249 RAGLAELPSKFYGSDIDPRVIQAARKNARRAGVAELITFEVKDVADLKNPL-PKGPTGLVISNPPYGERLGEEPALIALY 327 (702)
T ss_pred hhcccccCceEEEEECCHHHHHHHHHHHHHcCCCcceEEEeCChhhccccc-ccCCCCEEEECCCCcCccCchHHHHHHH
Confidence 1236999999997777766666654 35889999998764321 12479999999992 111122
Q ss_pred --HHHHHhccCCCCcEEEEEE
Q 021911 230 --LALNASYFLKAGGHFVISI 248 (305)
Q Consensus 230 --l~~~a~~~LkpGG~lv~s~ 248 (305)
+. ...+.+.+|+.+++.+
T Consensus 328 ~~lg-~~lk~~~~g~~~~llt 347 (702)
T PRK11783 328 SQLG-RRLKQQFGGWNAALFS 347 (702)
T ss_pred HHHH-HHHHHhCCCCeEEEEe
Confidence 22 2233334787777765
|
|
| >COG0357 GidB Predicted S-adenosylmethionine-dependent methyltransferase involved in bacterial cell division [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=98.38 E-value=8.7e-06 Score=71.09 Aligned_cols=141 Identities=20% Similarity=0.105 Sum_probs=91.3
Q ss_pred CCEEEEEecCCCccHHHHHhhhCCCcEEEEEeCChHHHHHHHHHHHcC--CCeEEEEccCCCCcccccCCCc-EeEEEEe
Q 021911 144 GARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKR--TNVIPIIEDARHPAKYRMLVGM-VDVIFSD 220 (305)
Q Consensus 144 g~~VLDlG~G~G~~t~~la~~~~~~~~V~avD~s~~~~~~l~~~a~~~--~nI~~~~~D~~~~~~~~~~~~~-fD~V~~d 220 (305)
..+++|||+|.|--+..+| ++.|+.+|+-+|...+.+.-+....++- +|+++++..+.+.... .. ||+|++-
T Consensus 68 ~~~~~DIGSGaGfPGipLA-I~~p~~~vtLles~~Kk~~FL~~~~~eL~L~nv~i~~~RaE~~~~~----~~~~D~vtsR 142 (215)
T COG0357 68 AKRVLDIGSGAGFPGIPLA-IAFPDLKVTLLESLGKKIAFLREVKKELGLENVEIVHGRAEEFGQE----KKQYDVVTSR 142 (215)
T ss_pred CCEEEEeCCCCCCchhhHH-HhccCCcEEEEccCchHHHHHHHHHHHhCCCCeEEehhhHhhcccc----cccCcEEEee
Confidence 5899999999999999999 4457888999999876655554444443 7899999998877532 13 9999997
Q ss_pred CCChhHHHHHHHHHhccCCCCcEEEEEEcccccCCCCchhhhHHHHHHHHHHCCCcEeEEeecCCCCC--ceEEEEEEEc
Q 021911 221 VAQPDQARILALNASYFLKAGGHFVISIKANCIDSTVPAEAVFQSEVKKLQQDQFKPFEQVTLEPFER--DHACVVGGYR 298 (305)
Q Consensus 221 ~~~~~~~~~l~~~a~~~LkpGG~lv~s~~~~~i~~~~~~~~v~~~~~~~l~~~Gf~~~e~~~l~p~~~--~~~~vv~~~~ 298 (305)
+..+.. .++. -+..+||++|.++..... .......+....+...++.......+.--.. ...+++-.++
T Consensus 143 Ava~L~-~l~e-~~~pllk~~g~~~~~k~~-------~~~~e~~e~~~a~~~~~~~~~~~~~~~~p~~~~~r~l~ii~~~ 213 (215)
T COG0357 143 AVASLN-VLLE-LCLPLLKVGGGFLAYKGL-------AGKDELPEAEKAILPLGGQVEKVFSLTVPELDGERHLVIIRKR 213 (215)
T ss_pred hccchH-HHHH-HHHHhcccCCcchhhhHH-------hhhhhHHHHHHHHHhhcCcEEEEEEeecCCCCCceEEEEEecc
Confidence 765532 2233 677999999987654310 0111222233444556777776655433222 3444544443
|
|
| >KOG1099 consensus SAM-dependent methyltransferase/cell division protein FtsJ [Cell cycle control, cell division, chromosome partitioning; General function prediction only] | Back alignment and domain information |
|---|
Probab=98.38 E-value=5.4e-07 Score=78.15 Aligned_cols=116 Identities=29% Similarity=0.315 Sum_probs=80.3
Q ss_pred hhhHHHHHHHccccccCCCCC-CEEEEEecCCCccHHHHHhhhCC----Cc----EEEEEeCChHHHHHHHHHHHcCCCe
Q 021911 124 FRSKLAAAVLGGVDNIWIKPG-ARVLYLGAASGTTVSHVSDIVGP----NG----VVYAVEFSHRSGRDLVNMAKKRTNV 194 (305)
Q Consensus 124 ~~s~l~a~ll~~l~~~~~~~g-~~VLDlG~G~G~~t~~la~~~~~----~~----~V~avD~s~~~~~~l~~~a~~~~nI 194 (305)
+++.-+-.+|..=+.+++-.+ .+|+|||+++|.|+..|++.+-. .. .|++||+.+ |+- -+.|
T Consensus 21 wRARSAFKLlqideef~i~~gv~rvVDLCAAPGSWSQvlSrkL~~~~~~~~~~~~kIVaVDLQ~--------MaP-I~GV 91 (294)
T KOG1099|consen 21 WRARSAFKLLQIDEEFQIFEGVKRVVDLCAAPGSWSQVLSRKLYKPLPSSGERDKKIVAVDLQP--------MAP-IEGV 91 (294)
T ss_pred chHHhHHHHhhhhhhhhHHhhhhHHhhhhcCCCcHHHHHHHHHhccCCCcchhhccEEEEeccc--------CCc-cCce
Confidence 356666666653333344333 68999999999999999987633 21 399999987 332 2578
Q ss_pred EEEEccCCCCcccc-----cCCCcEeEEEEeCC----------ChhHHHHHHH---HHhccCCCCcEEEEEE
Q 021911 195 IPIIEDARHPAKYR-----MLVGMVDVIFSDVA----------QPDQARILAL---NASYFLKAGGHFVISI 248 (305)
Q Consensus 195 ~~~~~D~~~~~~~~-----~~~~~fD~V~~d~~----------~~~~~~~l~~---~a~~~LkpGG~lv~s~ 248 (305)
.-++.|+++..... +-..+.|+|+||-+ ...|.++|.. -+..+|||||.|+--+
T Consensus 92 ~qlq~DIT~~stae~Ii~hfggekAdlVvcDGAPDvTGlHd~DEy~Q~qLllaAl~i~t~Vlk~Gg~FVaKi 163 (294)
T KOG1099|consen 92 IQLQGDITSASTAEAIIEHFGGEKADLVVCDGAPDVTGLHDLDEYVQAQLLLAALNIATCVLKPGGSFVAKI 163 (294)
T ss_pred EEeecccCCHhHHHHHHHHhCCCCccEEEeCCCCCccccccHHHHHHHHHHHHHHHHHhheecCCCeeehhh
Confidence 88999999876432 12358999999877 1246666551 2557899999998754
|
|
| >KOG1499 consensus Protein arginine N-methyltransferase PRMT1 and related enzymes [Posttranslational modification, protein turnover, chaperones; Transcription; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.34 E-value=2e-06 Score=79.27 Aligned_cols=104 Identities=21% Similarity=0.187 Sum_probs=69.6
Q ss_pred ccCCCCCCEEEEEecCCCccHHHHHhhhCCCcEEEEEeCChHHHHHHHHHHHcC---CCeEEEEccCCCCcccccCCCcE
Q 021911 138 NIWIKPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKR---TNVIPIIEDARHPAKYRMLVGMV 214 (305)
Q Consensus 138 ~~~~~~g~~VLDlG~G~G~~t~~la~~~~~~~~V~avD~s~~~~~~l~~~a~~~---~nI~~~~~D~~~~~~~~~~~~~f 214 (305)
+-++-.+..|||+|||+|.+++..|+. ...+|+|||.|.-+ ....+.+..+ ..|++++..+.+.. . +.+++
T Consensus 55 n~~lf~dK~VlDVGcGtGILS~F~akA--GA~~V~aVe~S~ia-~~a~~iv~~N~~~~ii~vi~gkvEdi~-L--P~eKV 128 (346)
T KOG1499|consen 55 NKHLFKDKTVLDVGCGTGILSMFAAKA--GARKVYAVEASSIA-DFARKIVKDNGLEDVITVIKGKVEDIE-L--PVEKV 128 (346)
T ss_pred chhhcCCCEEEEcCCCccHHHHHHHHh--CcceEEEEechHHH-HHHHHHHHhcCccceEEEeecceEEEe-c--Cccce
Confidence 335567899999999999999998887 46799999999633 2333333333 34777777776652 1 25899
Q ss_pred eEEEEeCC-----ChhHHHHHHHHHhccCCCCcEEEEE
Q 021911 215 DVIFSDVA-----QPDQARILALNASYFLKAGGHFVIS 247 (305)
Q Consensus 215 D~V~~d~~-----~~~~~~~l~~~a~~~LkpGG~lv~s 247 (305)
|+|++.-. .......+.-.=-++|+|||.++=+
T Consensus 129 DiIvSEWMGy~Ll~EsMldsVl~ARdkwL~~~G~i~P~ 166 (346)
T KOG1499|consen 129 DIIVSEWMGYFLLYESMLDSVLYARDKWLKEGGLIYPD 166 (346)
T ss_pred eEEeehhhhHHHHHhhhhhhhhhhhhhccCCCceEccc
Confidence 99999665 1122222221334789999987543
|
|
| >TIGR03439 methyl_EasF probable methyltransferase domain, EasF family | Back alignment and domain information |
|---|
Probab=98.32 E-value=7.1e-06 Score=76.04 Aligned_cols=108 Identities=16% Similarity=0.177 Sum_probs=75.4
Q ss_pred CCCCCCEEEEEecCCCccHHHHHhhhCC---CcEEEEEeCChHHHHHHHHHHH-cC-CCeE--EEEccCCCCccc---cc
Q 021911 140 WIKPGARVLYLGAASGTTVSHVSDIVGP---NGVVYAVEFSHRSGRDLVNMAK-KR-TNVI--PIIEDARHPAKY---RM 209 (305)
Q Consensus 140 ~~~~g~~VLDlG~G~G~~t~~la~~~~~---~~~V~avD~s~~~~~~l~~~a~-~~-~nI~--~~~~D~~~~~~~---~~ 209 (305)
.+.++..|+|+|||++.++..|.+.+.. ..+.++||+|..+++..++.+. .. ++|. .+++|..+.... ..
T Consensus 73 ~i~~~~~lIELGsG~~~Kt~~LL~aL~~~~~~~~Y~plDIS~~~L~~a~~~L~~~~~p~l~v~~l~gdy~~~l~~l~~~~ 152 (319)
T TIGR03439 73 SIPSGSMLVELGSGNLRKVGILLEALERQKKSVDYYALDVSRSELQRTLAELPLGNFSHVRCAGLLGTYDDGLAWLKRPE 152 (319)
T ss_pred hcCCCCEEEEECCCchHHHHHHHHHHHhcCCCceEEEEECCHHHHHHHHHhhhhccCCCeEEEEEEecHHHHHhhccccc
Confidence 3456789999999999999999987742 3578999999988887777776 33 5554 588888664321 01
Q ss_pred CCCcEeEEEE------eCCChhHHHHHHHHHhc-cCCCCcEEEEEE
Q 021911 210 LVGMVDVIFS------DVAQPDQARILALNASY-FLKAGGHFVISI 248 (305)
Q Consensus 210 ~~~~fD~V~~------d~~~~~~~~~l~~~a~~-~LkpGG~lv~s~ 248 (305)
......+|+. |+..++....|. ++++ .|+|++.|++..
T Consensus 153 ~~~~~r~~~flGSsiGNf~~~ea~~fL~-~~~~~~l~~~d~lLiG~ 197 (319)
T TIGR03439 153 NRSRPTTILWLGSSIGNFSRPEAAAFLA-GFLATALSPSDSFLIGL 197 (319)
T ss_pred ccCCccEEEEeCccccCCCHHHHHHHHH-HHHHhhCCCCCEEEEec
Confidence 1233456553 223344445554 8888 999999999976
|
This model represents an uncharacterized domain of about 300 amino acids with homology to S-adenosylmethionine-dependent methyltransferases. Proteins with this domain are exclusively fungal. A few, such as EasF from Neotyphodium lolii, are associated with the biosynthesis of ergot alkaloids, a class of fungal secondary metabolites. EasF may, in fact, be the AdoMet:dimethylallyltryptophan N-methyltransferase, the enzyme that follows tryptophan dimethylallyltransferase (DMATS) in ergot alkaloid biosynthesis. Several other members of this family, including mug158 (meiotically up-regulated gene 158 protein) from Schizosaccharomyces pombe, contain an additional uncharacterized domain DUF323 (pfam03781). |
| >PRK04148 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=98.32 E-value=8e-06 Score=65.99 Aligned_cols=94 Identities=14% Similarity=0.170 Sum_probs=65.4
Q ss_pred CCCCEEEEEecCCCc-cHHHHHhhhCCCcEEEEEeCChHHHHHHHHHHHcCCCeEEEEccCCCCcccccCCCcEeEEEEe
Q 021911 142 KPGARVLYLGAASGT-TVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKRTNVIPIIEDARHPAKYRMLVGMVDVIFSD 220 (305)
Q Consensus 142 ~~g~~VLDlG~G~G~-~t~~la~~~~~~~~V~avD~s~~~~~~l~~~a~~~~nI~~~~~D~~~~~~~~~~~~~fD~V~~d 220 (305)
..+.+|||+|||+|. .+..|++. ...|+++|+++. .++.+++. .+.+++.|+.++... +...+|+|.+-
T Consensus 15 ~~~~kileIG~GfG~~vA~~L~~~---G~~ViaIDi~~~----aV~~a~~~-~~~~v~dDlf~p~~~--~y~~a~liysi 84 (134)
T PRK04148 15 GKNKKIVELGIGFYFKVAKKLKES---GFDVIVIDINEK----AVEKAKKL-GLNAFVDDLFNPNLE--IYKNAKLIYSI 84 (134)
T ss_pred ccCCEEEEEEecCCHHHHHHHHHC---CCEEEEEECCHH----HHHHHHHh-CCeEEECcCCCCCHH--HHhcCCEEEEe
Confidence 346899999999996 77777754 359999999994 45555543 578999999887643 34689999986
Q ss_pred CCChhHHHHHHHHHhccCCCCcEEEEEE
Q 021911 221 VAQPDQARILALNASYFLKAGGHFVISI 248 (305)
Q Consensus 221 ~~~~~~~~~l~~~a~~~LkpGG~lv~s~ 248 (305)
-|.++....+. ++++-+.. -|++.+
T Consensus 85 rpp~el~~~~~-~la~~~~~--~~~i~~ 109 (134)
T PRK04148 85 RPPRDLQPFIL-ELAKKINV--PLIIKP 109 (134)
T ss_pred CCCHHHHHHHH-HHHHHcCC--CEEEEc
Confidence 66665554454 44444444 355554
|
|
| >PRK00536 speE spermidine synthase; Provisional | Back alignment and domain information |
|---|
Probab=98.30 E-value=2.1e-05 Score=70.95 Aligned_cols=135 Identities=11% Similarity=0.087 Sum_probs=88.6
Q ss_pred CCCCCCEEEEEecCCCccHHHHHhhhCCCcEEEEEeCChHHHHHHHHHHHc----------CCCeEEEEccCCCCccccc
Q 021911 140 WIKPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKK----------RTNVIPIIEDARHPAKYRM 209 (305)
Q Consensus 140 ~~~~g~~VLDlG~G~G~~t~~la~~~~~~~~V~avD~s~~~~~~l~~~a~~----------~~nI~~~~~D~~~~~~~~~ 209 (305)
++.| .+||-+|.|.|..+..++++ +. +|+-||+++ ++++.+++ .++++++.. +. . .
T Consensus 70 h~~p-k~VLIiGGGDGg~~REvLkh--~~-~v~mVeID~----~Vv~~~k~~lP~~~~~~~DpRv~l~~~-~~---~--~ 135 (262)
T PRK00536 70 KKEL-KEVLIVDGFDLELAHQLFKY--DT-HVDFVQADE----KILDSFISFFPHFHEVKNNKNFTHAKQ-LL---D--L 135 (262)
T ss_pred CCCC-CeEEEEcCCchHHHHHHHCc--CC-eeEEEECCH----HHHHHHHHHCHHHHHhhcCCCEEEeeh-hh---h--c
Confidence 4444 89999999999999999998 44 999999999 44444444 266776651 11 1 0
Q ss_pred CCCcEeEEEEeCCChhHHHHHHHHHhccCCCCcEEEEEEcccccCCCCchhhhHHHHHHHHHHCCCcEeEEe--ecCCCC
Q 021911 210 LVGMVDVIFSDVAQPDQARILALNASYFLKAGGHFVISIKANCIDSTVPAEAVFQSEVKKLQQDQFKPFEQV--TLEPFE 287 (305)
Q Consensus 210 ~~~~fD~V~~d~~~~~~~~~l~~~a~~~LkpGG~lv~s~~~~~i~~~~~~~~v~~~~~~~l~~~Gf~~~e~~--~l~p~~ 287 (305)
..++||+||+|...+ .+.+. .+++.|+|+|.|+... .+... ....+....+.+++ .|...... .+.+|
T Consensus 136 ~~~~fDVIIvDs~~~--~~fy~-~~~~~L~~~Gi~v~Qs--~sp~~---~~~~~~~i~~~l~~-~F~~v~~y~~~vp~~- 205 (262)
T PRK00536 136 DIKKYDLIICLQEPD--IHKID-GLKRMLKEDGVFISVA--KHPLL---EHVSMQNALKNMGD-FFSIAMPFVAPLRIL- 205 (262)
T ss_pred cCCcCCEEEEcCCCC--hHHHH-HHHHhcCCCcEEEECC--CCccc---CHHHHHHHHHHHHh-hCCceEEEEecCCCc-
Confidence 136899999995422 33344 7789999999999865 22111 13345555667766 58855433 33344
Q ss_pred CceEEEEEEEc
Q 021911 288 RDHACVVGGYR 298 (305)
Q Consensus 288 ~~~~~vv~~~~ 298 (305)
..+.+++|.+.
T Consensus 206 g~wgf~~aS~~ 216 (262)
T PRK00536 206 SNKGYIYASFK 216 (262)
T ss_pred chhhhheecCC
Confidence 55666777654
|
|
| >PF00398 RrnaAD: Ribosomal RNA adenine dimethylase; InterPro: IPR001737 This family of proteins include rRNA adenine dimethylases (e | Back alignment and domain information |
|---|
Probab=98.29 E-value=1.2e-05 Score=72.73 Aligned_cols=103 Identities=18% Similarity=0.165 Sum_probs=77.4
Q ss_pred HHHHHHHccccccCCCCCCEEEEEecCCCccHHHHHhhhCCCcEEEEEeCChHHHHHHHHHHHcCCCeEEEEccCCCCcc
Q 021911 127 KLAAAVLGGVDNIWIKPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKRTNVIPIIEDARHPAK 206 (305)
Q Consensus 127 ~l~a~ll~~l~~~~~~~g~~VLDlG~G~G~~t~~la~~~~~~~~V~avD~s~~~~~~l~~~a~~~~nI~~~~~D~~~~~~ 206 (305)
.++..+++.+ .+.++..|||+|+|+|.+|..|++.. .+|++||+++.....+.+.....+|++++..|+..++.
T Consensus 17 ~~~~~Iv~~~---~~~~~~~VlEiGpG~G~lT~~L~~~~---~~v~~vE~d~~~~~~L~~~~~~~~~~~vi~~D~l~~~~ 90 (262)
T PF00398_consen 17 NIADKIVDAL---DLSEGDTVLEIGPGPGALTRELLKRG---KRVIAVEIDPDLAKHLKERFASNPNVEVINGDFLKWDL 90 (262)
T ss_dssp HHHHHHHHHH---TCGTTSEEEEESSTTSCCHHHHHHHS---SEEEEEESSHHHHHHHHHHCTTCSSEEEEES-TTTSCG
T ss_pred HHHHHHHHhc---CCCCCCEEEEeCCCCccchhhHhccc---CcceeecCcHhHHHHHHHHhhhcccceeeecchhcccc
Confidence 4455554333 56689999999999999999999985 58999999996655555554445899999999998876
Q ss_pred cccCCCcEeEEEEeCCChhHHHHHHHHHhc
Q 021911 207 YRMLVGMVDVIFSDVAQPDQARILALNASY 236 (305)
Q Consensus 207 ~~~~~~~fD~V~~d~~~~~~~~~l~~~a~~ 236 (305)
+.........|+++.|...-..++. ++..
T Consensus 91 ~~~~~~~~~~vv~NlPy~is~~il~-~ll~ 119 (262)
T PF00398_consen 91 YDLLKNQPLLVVGNLPYNISSPILR-KLLE 119 (262)
T ss_dssp GGHCSSSEEEEEEEETGTGHHHHHH-HHHH
T ss_pred HHhhcCCceEEEEEecccchHHHHH-HHhh
Confidence 6434567889999999766666666 5444
|
g. KsgA) and the Erythromycin resistance methylases (Erm). The bacterial enzyme KsgA catalyses the transfer of a total of four methyl groups from S-adenosyl-l-methionine (S-AdoMet) to two adjacent adenosine bases in 16S rRNA. This enzyme and the resulting modified adenosine bases appear to be conserved in all species of eubacteria, eukaryotes, and archaea, and in eukaryotic organelles. Bacterial resistance to the aminoglycoside antibiotic kasugamycin involves inactivation of KsgA and resulting loss of the dimethylations, with modest consequences to the overall fitness of the organism. In contrast, the yeast ortholog, Dim1, is essential. In Saccharomyces cerevisiae (Baker's yeast), and presumably in other eukaryotes, the enzyme performs a vital role in pre-rRNA processing in addition to its methylating activity. The best conserved region in these enzymes is located in the N-terminal section and corresponds to a region that is probably involved in S-adenosyl methionine (SAM) binding domain. The crystal structure of KsgA from Escherichia coli has been solved to a resolution of 2.1A. It bears a strong similarity to the crystal structure of ErmC' from Bacillus stearothermophilus and a lesser similarity to the yeast mitochondrial transcription factor, sc-mtTFB []. The Erm family of RNA methyltransferases, which methylate a single adenosine base in 23S rRNA confer resistance to the MLS-B group of antibiotics. Despite their sequence similarity, the two enzyme families have strikingly different levels of regulation that remain to be elucidated. Other orthologs, of this family include the yeast and Homo sapiens (Human) mitochondrial transcription factors (MTF1 and h-mtTFB respectively), which are nuclear encoded []. Human-mtTFB is able to stimulate transcription in vitro independently of its S-adenosylmethionine binding and rRNA methyltransferase activity [].; GO: 0000179 rRNA (adenine-N6,N6-)-dimethyltransferase activity, 0008649 rRNA methyltransferase activity, 0000154 rRNA modification; PDB: 3FTF_A 3R9X_B 3FTE_A 3FTC_A 3FTD_A 3GRY_A 3FYC_A 3GRU_A 3FYD_A 3GRV_A .... |
| >PLN02232 ubiquinone biosynthesis methyltransferase | Back alignment and domain information |
|---|
Probab=98.28 E-value=2.2e-06 Score=71.73 Aligned_cols=69 Identities=20% Similarity=0.141 Sum_probs=53.5
Q ss_pred EEEeCChHHHHHHHHHHHcC---------CCeEEEEccCCCCcccccCCCcEeEEEEeCC---ChhHHHHHHHHHhccCC
Q 021911 172 YAVEFSHRSGRDLVNMAKKR---------TNVIPIIEDARHPAKYRMLVGMVDVIFSDVA---QPDQARILALNASYFLK 239 (305)
Q Consensus 172 ~avD~s~~~~~~l~~~a~~~---------~nI~~~~~D~~~~~~~~~~~~~fD~V~~d~~---~~~~~~~l~~~a~~~Lk 239 (305)
+++|+|+ +|++.++++ .+|++++.|+.+.+. ..++||+|++... .++..+.+. +++++||
T Consensus 1 ~GvD~S~----~ML~~A~~~~~~~~~~~~~~i~~~~~d~~~lp~---~~~~fD~v~~~~~l~~~~d~~~~l~-ei~rvLk 72 (160)
T PLN02232 1 MGLDFSS----EQLAVAATRQSLKARSCYKCIEWIEGDAIDLPF---DDCEFDAVTMGYGLRNVVDRLRAMK-EMYRVLK 72 (160)
T ss_pred CeEcCCH----HHHHHHHHhhhcccccCCCceEEEEechhhCCC---CCCCeeEEEecchhhcCCCHHHHHH-HHHHHcC
Confidence 4799999 555555322 369999999987652 3568999998664 457788887 9999999
Q ss_pred CCcEEEEEE
Q 021911 240 AGGHFVISI 248 (305)
Q Consensus 240 pGG~lv~s~ 248 (305)
|||+|++..
T Consensus 73 pGG~l~i~d 81 (160)
T PLN02232 73 PGSRVSILD 81 (160)
T ss_pred cCeEEEEEE
Confidence 999999875
|
|
| >PF08123 DOT1: Histone methylation protein DOT1 ; InterPro: IPR013110 The DOT1 domain regulates gene expression by methylating histone H3 [] | Back alignment and domain information |
|---|
Probab=98.28 E-value=3.2e-06 Score=73.57 Aligned_cols=108 Identities=24% Similarity=0.205 Sum_probs=62.8
Q ss_pred cCCCCCCEEEEEecCCCccHHHHHhhhCCCcEEEEEeCChHHHHHHH---HHHHc--------CCCeEEEEccCCCCccc
Q 021911 139 IWIKPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLV---NMAKK--------RTNVIPIIEDARHPAKY 207 (305)
Q Consensus 139 ~~~~~g~~VLDlG~G~G~~t~~la~~~~~~~~V~avD~s~~~~~~l~---~~a~~--------~~nI~~~~~D~~~~~~~ 207 (305)
+.+.+++..+|||||.|..+.++|...+ -..+++||+.+....... +..++ ...+.++..|+.+.+..
T Consensus 38 ~~l~~~dvF~DlGSG~G~~v~~aal~~~-~~~~~GIEi~~~~~~~a~~~~~~~~~~~~~~g~~~~~v~l~~gdfl~~~~~ 116 (205)
T PF08123_consen 38 LNLTPDDVFYDLGSGVGNVVFQAALQTG-CKKSVGIEILPELHDLAEELLEELKKRMKHYGKRPGKVELIHGDFLDPDFV 116 (205)
T ss_dssp TT--TT-EEEEES-TTSHHHHHHHHHH---SEEEEEE-SHHHHHHHHHHHHHHHHHHHHCTB---EEEEECS-TTTHHHH
T ss_pred hCCCCCCEEEECCCCCCHHHHHHHHHcC-CcEEEEEEechHHHHHHHHHHHHHHHHHHHhhcccccceeeccCccccHhH
Confidence 3688999999999999999999997753 335999999975433222 11111 14678888998876532
Q ss_pred ccCCCcEeEEEEeCCC--hhHHHHHHHHHhccCCCCcEEEEEEc
Q 021911 208 RMLVGMVDVIFSDVAQ--PDQARILALNASYFLKAGGHFVISIK 249 (305)
Q Consensus 208 ~~~~~~fD~V~~d~~~--~~~~~~l~~~a~~~LkpGG~lv~s~~ 249 (305)
.......|+|++|..+ ++....|. .....||+|-++ ++++
T Consensus 117 ~~~~s~AdvVf~Nn~~F~~~l~~~L~-~~~~~lk~G~~I-Is~~ 158 (205)
T PF08123_consen 117 KDIWSDADVVFVNNTCFDPDLNLALA-ELLLELKPGARI-ISTK 158 (205)
T ss_dssp HHHGHC-SEEEE--TTT-HHHHHHHH-HHHTTS-TT-EE-EESS
T ss_pred hhhhcCCCEEEEeccccCHHHHHHHH-HHHhcCCCCCEE-EECC
Confidence 2223568999998774 44445555 666788888665 4553
|
H3 methylation by DOT1 has been shown to be required for the DNA damage checkpoint in yeast [].; GO: 0018024 histone-lysine N-methyltransferase activity; PDB: 4ER3_A 4ER6_A 4EQZ_A 1NW3_A 3UWP_A 4ER5_A 3QOX_A 3SX0_A 4ER7_A 3SR4_A .... |
| >COG4076 Predicted RNA methylase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.27 E-value=1.7e-06 Score=72.95 Aligned_cols=93 Identities=19% Similarity=0.192 Sum_probs=71.6
Q ss_pred CEEEEEecCCCccHHHHHhhhCCCcEEEEEeCChHHHHHHHHHHHcC--CCeEEEEccCCCCcccccCCCcEeEEEEeCC
Q 021911 145 ARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKR--TNVIPIIEDARHPAKYRMLVGMVDVIFSDVA 222 (305)
Q Consensus 145 ~~VLDlG~G~G~~t~~la~~~~~~~~V~avD~s~~~~~~l~~~a~~~--~nI~~~~~D~~~~~~~~~~~~~fD~V~~d~~ 222 (305)
+.+.|||+|+|.++...|+.. -+|+|+|.+|...+-+-++.+-. .|++.+..|+.+.. ....|+|+|.+.
T Consensus 34 d~~~DLGaGsGiLs~~Aa~~A---~rViAiE~dPk~a~~a~eN~~v~g~~n~evv~gDA~~y~-----fe~ADvvicEml 105 (252)
T COG4076 34 DTFADLGAGSGILSVVAAHAA---ERVIAIEKDPKRARLAEENLHVPGDVNWEVVVGDARDYD-----FENADVVICEML 105 (252)
T ss_pred hceeeccCCcchHHHHHHhhh---ceEEEEecCcHHHHHhhhcCCCCCCcceEEEeccccccc-----ccccceeHHHHh
Confidence 789999999999998888773 38999999995544333333222 68999999998875 357899999776
Q ss_pred -----ChhHHHHHHHHHhccCCCCcEEEE
Q 021911 223 -----QPDQARILALNASYFLKAGGHFVI 246 (305)
Q Consensus 223 -----~~~~~~~l~~~a~~~LkpGG~lv~ 246 (305)
...|...+. .+..||+..+.++=
T Consensus 106 DTaLi~E~qVpV~n-~vleFLr~d~tiiP 133 (252)
T COG4076 106 DTALIEEKQVPVIN-AVLEFLRYDPTIIP 133 (252)
T ss_pred hHHhhcccccHHHH-HHHHHhhcCCcccc
Confidence 345777776 77889999988764
|
|
| >PF05891 Methyltransf_PK: AdoMet dependent proline di-methyltransferase; InterPro: IPR008576 This family consists of several eukaryotic proteins of unknown function that are S-adenosyl-L-methionine-dependent methyltransferase-like | Back alignment and domain information |
|---|
Probab=98.26 E-value=7.4e-06 Score=71.19 Aligned_cols=141 Identities=16% Similarity=0.074 Sum_probs=80.5
Q ss_pred CCCEEEEEecCCCccHHHHHhhhCCCcEEEEEeCChHHHHHHHHHHHc-CCC-eEEEEccCCCCcccccCCCcEeEEEEe
Q 021911 143 PGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKK-RTN-VIPIIEDARHPAKYRMLVGMVDVIFSD 220 (305)
Q Consensus 143 ~g~~VLDlG~G~G~~t~~la~~~~~~~~V~avD~s~~~~~~l~~~a~~-~~n-I~~~~~D~~~~~~~~~~~~~fD~V~~d 220 (305)
.-.++||.|||-|..|.++...+ --+|..||.+++.+..+.+.... ... ..+.+.-+.++.+. ..+||+|++.
T Consensus 55 ~~~~alDcGAGIGRVTk~lLl~~--f~~VDlVEp~~~Fl~~a~~~l~~~~~~v~~~~~~gLQ~f~P~---~~~YDlIW~Q 129 (218)
T PF05891_consen 55 KFNRALDCGAGIGRVTKGLLLPV--FDEVDLVEPVEKFLEQAKEYLGKDNPRVGEFYCVGLQDFTPE---EGKYDLIWIQ 129 (218)
T ss_dssp --SEEEEET-TTTHHHHHTCCCC---SEEEEEES-HHHHHHHHHHTCCGGCCEEEEEES-GGG-------TT-EEEEEEE
T ss_pred CcceEEecccccchhHHHHHHHh--cCEeEEeccCHHHHHHHHHHhcccCCCcceEEecCHhhccCC---CCcEeEEEeh
Confidence 35799999999999999876543 23899999999555555444333 223 45566666555432 4699999986
Q ss_pred CC-----ChhHHHHHHHHHhccCCCCcEEEEEEcccc-----cCCCCchhhhH-HHHHHHHHHCCCcEeEEeecCCCCCc
Q 021911 221 VA-----QPDQARILALNASYFLKAGGHFVISIKANC-----IDSTVPAEAVF-QSEVKKLQQDQFKPFEQVTLEPFERD 289 (305)
Q Consensus 221 ~~-----~~~~~~~l~~~a~~~LkpGG~lv~s~~~~~-----i~~~~~~~~v~-~~~~~~l~~~Gf~~~e~~~l~p~~~~ 289 (305)
-. ..+..+.|. ++...|+|+|.+++-...+. ++.....-..- ....+.++++|++++....-.-|++.
T Consensus 130 W~lghLTD~dlv~fL~-RCk~~L~~~G~IvvKEN~~~~~~~~~D~~DsSvTRs~~~~~~lF~~AGl~~v~~~~Q~~fP~~ 208 (218)
T PF05891_consen 130 WCLGHLTDEDLVAFLK-RCKQALKPNGVIVVKENVSSSGFDEFDEEDSSVTRSDEHFRELFKQAGLRLVKEEKQKGFPKE 208 (218)
T ss_dssp S-GGGS-HHHHHHHHH-HHHHHEEEEEEEEEEEEEESSSEEEEETTTTEEEEEHHHHHHHHHHCT-EEEEEEE-TT--TT
T ss_pred HhhccCCHHHHHHHHH-HHHHhCcCCcEEEEEecCCCCCCcccCCccCeeecCHHHHHHHHHHcCCEEEEeccccCCCcc
Confidence 55 334556665 99999999999998652111 11111111111 22245558899999987655555443
|
; GO: 0008168 methyltransferase activity; PDB: 1XTP_A 2EX4_B. |
| >COG1352 CheR Methylase of chemotaxis methyl-accepting proteins [Cell motility and secretion / Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.25 E-value=9.7e-06 Score=73.24 Aligned_cols=101 Identities=19% Similarity=0.208 Sum_probs=70.4
Q ss_pred CCEEEEEecCCCc----cHHHHHhhhC----CCcEEEEEeCChHHHHHHHH------HH--------HcC----------
Q 021911 144 GARVLYLGAASGT----TVSHVSDIVG----PNGVVYAVEFSHRSGRDLVN------MA--------KKR---------- 191 (305)
Q Consensus 144 g~~VLDlG~G~G~----~t~~la~~~~----~~~~V~avD~s~~~~~~l~~------~a--------~~~---------- 191 (305)
.-+|+-++|++|- .+..+++.+. ...+|+|+|+|...+..+.. .. .++
T Consensus 97 ~irIWSaaCStGEEpYSiAm~l~e~~~~~~~~~~~I~AtDId~~~L~~A~~G~Y~~~~~~~~~~~~~~~ryF~~~~~~~y 176 (268)
T COG1352 97 PIRIWSAACSTGEEPYSLAMLLLEALGKLAGFRVKILATDIDLSVLEKARAGIYPSRELLRGLPPELLRRYFERGGDGSY 176 (268)
T ss_pred ceEEEecCcCCCccHHHHHHHHHHHhccccCCceEEEEEECCHHHHHHHhcCCCChhHhhccCCHHHHhhhEeecCCCcE
Confidence 5799999999997 3334444442 25799999999855433210 00 000
Q ss_pred -------CCeEEEEccCCCCcccccCCCcEeEEEE-eCC----ChhHHHHHHHHHhccCCCCcEEEEEE
Q 021911 192 -------TNVIPIIEDARHPAKYRMLVGMVDVIFS-DVA----QPDQARILALNASYFLKAGGHFVISI 248 (305)
Q Consensus 192 -------~nI~~~~~D~~~~~~~~~~~~~fD~V~~-d~~----~~~~~~~l~~~a~~~LkpGG~lv~s~ 248 (305)
.+|.|...|+.+... ....||+|+| |+. .+.|.+++. ..+..|+|||+|++-.
T Consensus 177 ~v~~~ir~~V~F~~~NLl~~~~---~~~~fD~IfCRNVLIYFd~~~q~~il~-~f~~~L~~gG~LflG~ 241 (268)
T COG1352 177 RVKEELRKMVRFRRHNLLDDSP---FLGKFDLIFCRNVLIYFDEETQERILR-RFADSLKPGGLLFLGH 241 (268)
T ss_pred EEChHHhcccEEeecCCCCCcc---ccCCCCEEEEcceEEeeCHHHHHHHHH-HHHHHhCCCCEEEEcc
Confidence 346677777766543 2578999999 444 678899998 9999999999999964
|
|
| >PF13578 Methyltransf_24: Methyltransferase domain; PDB: 3SSO_A 3SSN_C 3SSM_D | Back alignment and domain information |
|---|
Probab=98.23 E-value=9.8e-07 Score=68.33 Aligned_cols=98 Identities=26% Similarity=0.283 Sum_probs=43.8
Q ss_pred EEEecCCCccHHHHHhhhCCCc--EEEEEeCChH--HHHHHHHHHHcCCCeEEEEccCCCCcccccCCCcEeEEEEeCCC
Q 021911 148 LYLGAASGTTVSHVSDIVGPNG--VVYAVEFSHR--SGRDLVNMAKKRTNVIPIIEDARHPAKYRMLVGMVDVIFSDVAQ 223 (305)
Q Consensus 148 LDlG~G~G~~t~~la~~~~~~~--~V~avD~s~~--~~~~l~~~a~~~~nI~~~~~D~~~~~~~~~~~~~fD~V~~d~~~ 223 (305)
||+|+..|..+..+++.+.+.. ++++||..+. ...+.++......+++++..|..+..+. ....++|+|+.|..+
T Consensus 1 lEiG~~~G~st~~l~~~~~~~~~~~~~~vD~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~l~~-~~~~~~dli~iDg~H 79 (106)
T PF13578_consen 1 LEIGTYSGYSTLWLASALRDNGRGKLYSVDPFPGDEQAQEIIKKAGLSDRVEFIQGDSPDFLPS-LPDGPIDLIFIDGDH 79 (106)
T ss_dssp --------------------------EEEESS------------GGG-BTEEEEES-THHHHHH-HHH--EEEEEEES--
T ss_pred CccccccccccccccccccccccCCEEEEECCCcccccchhhhhcCCCCeEEEEEcCcHHHHHH-cCCCCEEEEEECCCC
Confidence 6899999999999998876554 7999999983 2233333333346899999998654322 124799999999985
Q ss_pred --hhHHHHHHHHHhccCCCCcEEEEE
Q 021911 224 --PDQARILALNASYFLKAGGHFVIS 247 (305)
Q Consensus 224 --~~~~~~l~~~a~~~LkpGG~lv~s 247 (305)
+.....+. .+.+.|+|+|.+++-
T Consensus 80 ~~~~~~~dl~-~~~~~l~~ggviv~d 104 (106)
T PF13578_consen 80 SYEAVLRDLE-NALPRLAPGGVIVFD 104 (106)
T ss_dssp -HHHHHHHHH-HHGGGEEEEEEEEEE
T ss_pred CHHHHHHHHH-HHHHHcCCCeEEEEe
Confidence 44555666 899999999988874
|
|
| >TIGR02987 met_A_Alw26 type II restriction m6 adenine DNA methyltransferase, Alw26I/Eco31I/Esp3I family | Back alignment and domain information |
|---|
Probab=98.20 E-value=1.1e-05 Score=80.11 Aligned_cols=80 Identities=5% Similarity=0.071 Sum_probs=52.9
Q ss_pred CCCEEEEEecCCCccHHHHHhhhCC-------CcEEEEEeCChHHHHHHHHHHHcCC--CeEEEEccCCCCccc--ccCC
Q 021911 143 PGARVLYLGAASGTTVSHVSDIVGP-------NGVVYAVEFSHRSGRDLVNMAKKRT--NVIPIIEDARHPAKY--RMLV 211 (305)
Q Consensus 143 ~g~~VLDlG~G~G~~t~~la~~~~~-------~~~V~avD~s~~~~~~l~~~a~~~~--nI~~~~~D~~~~~~~--~~~~ 211 (305)
...+|||.|||+|.+...+++.+.. ...++++|+++.++..+...+.... .+..++.|....... ....
T Consensus 31 ~~~~ilDP~cGsG~fl~~~~~~~~~~~~~~~~~~~i~g~DId~~a~~~a~~~l~~~~~~~~~i~~~d~l~~~~~~~~~~~ 110 (524)
T TIGR02987 31 TKTKIIDPCCGDGRLIAALLKKNEEINYFKEVELNIYFADIDKTLLKRAKKLLGEFALLEINVINFNSLSYVLLNIESYL 110 (524)
T ss_pred cceEEEeCCCCccHHHHHHHHHHHhcCCcccceeeeeeechhHHHHHHHHHHHhhcCCCCceeeeccccccccccccccc
Confidence 4569999999999999999987631 2578999999966555444433322 344455554322111 0113
Q ss_pred CcEeEEEEeCC
Q 021911 212 GMVDVIFSDVA 222 (305)
Q Consensus 212 ~~fD~V~~d~~ 222 (305)
+.||+|++|||
T Consensus 111 ~~fD~IIgNPP 121 (524)
T TIGR02987 111 DLFDIVITNPP 121 (524)
T ss_pred CcccEEEeCCC
Confidence 58999999999
|
Members of this family are the m6-adenine DNA methyltransferase protein, or domain of a fusion protein that also carries m5 cytosine methyltransferase activity, of type II restriction systems of the Alw26I/Eco31I/Esp3I family. A methyltransferase of this family is alway accompanied by a type II restriction endonuclease from the Alw26I/Eco31I/Esp3I family (TIGR02986) and by an adenine-specific modification methyltransferase. Members of this family are unusual in that regions of similarity to homologs outside this family are circularly permuted. |
| >KOG1098 consensus Putative SAM-dependent rRNA methyltransferase SPB1 [RNA processing and modification; General function prediction only] | Back alignment and domain information |
|---|
Probab=98.14 E-value=4.4e-06 Score=81.55 Aligned_cols=114 Identities=26% Similarity=0.276 Sum_probs=78.8
Q ss_pred hhhHHHHHHHcccccc-CCCCCCEEEEEecCCCccHHHHHhhhCCCcEEEEEeCChHHHHHHHHHHHcCCCeEEEEccCC
Q 021911 124 FRSKLAAAVLGGVDNI-WIKPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKRTNVIPIIEDAR 202 (305)
Q Consensus 124 ~~s~l~a~ll~~l~~~-~~~~g~~VLDlG~G~G~~t~~la~~~~~~~~V~avD~s~~~~~~l~~~a~~~~nI~~~~~D~~ 202 (305)
|+|..+..|+++-.++ .+.+...||||||+||.+....++.++..+.|++||+-| .+--+|+..++.|++
T Consensus 24 yrsRsaFKLlQln~ky~fl~~a~~vlDLcaAPG~W~QVA~q~~pv~slivGvDl~p---------ikp~~~c~t~v~dIt 94 (780)
T KOG1098|consen 24 YRSRSAFKLLQLNKKYKFLEKAHVVLDLCAAPGGWLQVASQSMPVGSLIVGVDLVP---------IKPIPNCDTLVEDIT 94 (780)
T ss_pred hhHHHHHHHHHHHHHhccccccchheeeccCCcHHHHHHHHhCCCCceEEEeeeee---------cccCCccchhhhhhh
Confidence 4666666666532222 577889999999999999999999998788899999987 233367777778876
Q ss_pred CCccc-----ccCCCcEeEEEEeCCCh----------hHHH----HHHHHHhccCCCCcEEEEE
Q 021911 203 HPAKY-----RMLVGMVDVIFSDVAQP----------DQAR----ILALNASYFLKAGGHFVIS 247 (305)
Q Consensus 203 ~~~~~-----~~~~~~fD~V~~d~~~~----------~~~~----~l~~~a~~~LkpGG~lv~s 247 (305)
....- -+.....|+|+.|.+.. .|.. .+. -|..+|..+|.|+--
T Consensus 95 td~cr~~l~k~l~t~~advVLhDgapnVg~~w~~DA~~q~~L~l~al~-LA~~~l~~~g~fvtk 157 (780)
T KOG1098|consen 95 TDECRSKLRKILKTWKADVVLHDGAPNVGGNWVQDAFQQACLTLRALK-LATEFLAKGGTFVTK 157 (780)
T ss_pred HHHHHHHHHHHHHhCCCcEEeecCCCccchhHHHHHHHhhHHHHHHHH-HHHHHHHhcCccccc
Confidence 54211 01234679999988721 2222 232 367889999995543
|
|
| >PF01861 DUF43: Protein of unknown function DUF43; InterPro: IPR002723 This family of prokaryotic proteins have not been characterised | Back alignment and domain information |
|---|
Probab=98.09 E-value=8.4e-05 Score=65.59 Aligned_cols=138 Identities=18% Similarity=0.239 Sum_probs=71.7
Q ss_pred CCCEEEEEecCCCccHHHHHhhhCCCcEEEEEeCChHHHHHHHHHHHcC-CCeEEEEccCCCCcccccCCCcEeEEEEeC
Q 021911 143 PGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKR-TNVIPIIEDARHPAKYRMLVGMVDVIFSDV 221 (305)
Q Consensus 143 ~g~~VLDlG~G~G~~t~~la~~~~~~~~V~avD~s~~~~~~l~~~a~~~-~nI~~~~~D~~~~~~~~~~~~~fD~V~~d~ 221 (305)
.+.+||=+| -.-+++..+...+...+|+.+|++++.+..+.+.|++. -+|+.++.|++++.+. .+.++||++++|+
T Consensus 44 ~gk~il~lG--DDDLtSlA~al~~~~~~I~VvDiDeRll~fI~~~a~~~gl~i~~~~~DlR~~LP~-~~~~~fD~f~TDP 120 (243)
T PF01861_consen 44 EGKRILFLG--DDDLTSLALALTGLPKRITVVDIDERLLDFINRVAEEEGLPIEAVHYDLRDPLPE-ELRGKFDVFFTDP 120 (243)
T ss_dssp TT-EEEEES---TT-HHHHHHHHT--SEEEEE-S-HHHHHHHHHHHHHHT--EEEE---TTS---T-TTSS-BSEEEE--
T ss_pred cCCEEEEEc--CCcHHHHHHHhhCCCCeEEEEEcCHHHHHHHHHHHHHcCCceEEEEecccccCCH-HHhcCCCEEEeCC
Confidence 478898777 44444444444455679999999997766666666654 4599999999987654 2458999999999
Q ss_pred CC-hhHHHHHHHHHhccCCCCc-EEEEEEcccccCCCCchhhhHHHHHHHHHHCCCcEeEEe-ecCCCCC
Q 021911 222 AQ-PDQARILALNASYFLKAGG-HFVISIKANCIDSTVPAEAVFQSEVKKLQQDQFKPFEQV-TLEPFER 288 (305)
Q Consensus 222 ~~-~~~~~~l~~~a~~~LkpGG-~lv~s~~~~~i~~~~~~~~v~~~~~~~l~~~Gf~~~e~~-~l~p~~~ 288 (305)
|. ++-..++...+...||.-| ..+++. . +.+ .......+..+.+.+.||-+.+++ .++.|+.
T Consensus 121 PyT~~G~~LFlsRgi~~Lk~~g~~gy~~~---~-~~~-~s~~~~~~~Q~~l~~~gl~i~dii~~Fn~Y~g 185 (243)
T PF01861_consen 121 PYTPEGLKLFLSRGIEALKGEGCAGYFGF---T-HKE-ASPDKWLEVQRFLLEMGLVITDIIPDFNRYEG 185 (243)
T ss_dssp -SSHHHHHHHHHHHHHTB-STT-EEEEEE-----TTT---HHHHHHHHHHHHTS--EEEEEEEEEEEB--
T ss_pred CCCHHHHHHHHHHHHHHhCCCCceEEEEE---e-cCc-CcHHHHHHHHHHHHHCCcCHHHHHhhhccccc
Confidence 94 4555666667888999766 445544 1 111 111111222334468899998876 4555654
|
All the members are 350-400 amino acids long.; PDB: 2QM3_A. |
| >cd00315 Cyt_C5_DNA_methylase Cytosine-C5 specific DNA methylases; Methyl transfer reactions play an important role in many aspects of biology | Back alignment and domain information |
|---|
Probab=98.07 E-value=0.00016 Score=65.84 Aligned_cols=143 Identities=15% Similarity=0.137 Sum_probs=90.7
Q ss_pred EEEEEecCCCccHHHHHhhhCCCcEEEEEeCChHHHHHHHHHHHcC-CCeEEEEccCCCCcccccCCCcEeEEEEeCCCh
Q 021911 146 RVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKR-TNVIPIIEDARHPAKYRMLVGMVDVIFSDVAQP 224 (305)
Q Consensus 146 ~VLDlG~G~G~~t~~la~~~~~~~~V~avD~s~~~~~~l~~~a~~~-~nI~~~~~D~~~~~~~~~~~~~fD~V~~d~~~~ 224 (305)
+||||+||.|.++.-+.+. + --.|+++|+++.+ ++..+.+ ++. +++.|+.+..... ....+|+|+..+||.
T Consensus 2 ~v~dLFsG~Gg~~~gl~~~-G-~~~v~a~e~~~~a----~~~~~~N~~~~-~~~~Di~~~~~~~-~~~~~D~l~~gpPCq 73 (275)
T cd00315 2 RVIDLFAGIGGFRLGLEKA-G-FEIVAANEIDKSA----AETYEANFPNK-LIEGDITKIDEKD-FIPDIDLLTGGFPCQ 73 (275)
T ss_pred cEEEEccCcchHHHHHHHc-C-CEEEEEEeCCHHH----HHHHHHhCCCC-CccCccccCchhh-cCCCCCEEEeCCCCh
Confidence 6999999999998888765 3 3468999999944 4444433 333 5678887765432 135799999999953
Q ss_pred ------------hHHH-HHH--HHHhccCCCCcEEEEEEcccccCCCCchhhhHHHHHHHHHHCCCcEeEEeec-----C
Q 021911 225 ------------DQAR-ILA--LNASYFLKAGGHFVISIKANCIDSTVPAEAVFQSEVKKLQQDQFKPFEQVTL-----E 284 (305)
Q Consensus 225 ------------~~~~-~l~--~~a~~~LkpGG~lv~s~~~~~i~~~~~~~~v~~~~~~~l~~~Gf~~~e~~~l-----~ 284 (305)
+... ++. ..+.+.++|. ++++.-. .-+. ..+....+...++.|++.||.+...+-- -
T Consensus 74 ~fS~ag~~~~~~d~r~~L~~~~~~~i~~~~P~-~~v~ENV-~g~~-~~~~~~~~~~i~~~l~~~GY~~~~~~l~a~~~Gv 150 (275)
T cd00315 74 PFSIAGKRKGFEDTRGTLFFEIIRILKEKKPK-YFLLENV-KGLL-THDNGNTLKVILNTLEELGYNVYWKLLNASDYGV 150 (275)
T ss_pred hhhHHhhcCCCCCchHHHHHHHHHHHHhcCCC-EEEEEcC-cchh-ccCchHHHHHHHHHHHhCCcEEEEEEEEHHHcCC
Confidence 1111 221 0344556786 4444321 1111 1122345666778889999998765422 4
Q ss_pred CCCCceEEEEEEEcC
Q 021911 285 PFERDHACVVGGYRM 299 (305)
Q Consensus 285 p~~~~~~~vv~~~~~ 299 (305)
|..|..++++|.++.
T Consensus 151 PQ~R~R~~~ia~~~~ 165 (275)
T cd00315 151 PQNRERVFIIGIRKD 165 (275)
T ss_pred CCCCcEEEEEEEeCC
Confidence 778999999998754
|
Cytosine-specific DNA methylases are found both in prokaryotes and eukaryotes. DNA methylation, or the covalent addition of a methyl group to cytosine within the context of the CpG dinucleotide, has profound effects on the mammalian genome. These effects include transcriptional repression via inhibition of transcription factor binding or the recruitment of methyl-binding proteins and their associated chromatin remodeling factors, X chromosome inactivation, imprinting and the suppression of parasitic DNA sequences. DNA methylation is also essential for proper embryonic development and is an important player in both DNA repair and genome stability. |
| >KOG0820 consensus Ribosomal RNA adenine dimethylase [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.05 E-value=1.7e-05 Score=70.71 Aligned_cols=77 Identities=19% Similarity=0.178 Sum_probs=62.3
Q ss_pred ccCCCCCCEEEEEecCCCccHHHHHhhhCCCcEEEEEeCChHHHHHHHHHHHcC---CCeEEEEccCCCCcccccCCCcE
Q 021911 138 NIWIKPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKR---TNVIPIIEDARHPAKYRMLVGMV 214 (305)
Q Consensus 138 ~~~~~~g~~VLDlG~G~G~~t~~la~~~~~~~~V~avD~s~~~~~~l~~~a~~~---~nI~~~~~D~~~~~~~~~~~~~f 214 (305)
...+++.+.|||+|.|||.+|..|.+.- .+|+|+|++++++.++.+..+-- ...+++++|+...+ ...|
T Consensus 53 ka~~k~tD~VLEvGPGTGnLT~~lLe~~---kkVvA~E~Dprmvael~krv~gtp~~~kLqV~~gD~lK~d-----~P~f 124 (315)
T KOG0820|consen 53 KADLKPTDVVLEVGPGTGNLTVKLLEAG---KKVVAVEIDPRMVAELEKRVQGTPKSGKLQVLHGDFLKTD-----LPRF 124 (315)
T ss_pred ccCCCCCCEEEEeCCCCCHHHHHHHHhc---CeEEEEecCcHHHHHHHHHhcCCCccceeeEEecccccCC-----Cccc
Confidence 3368999999999999999999999883 48999999996666665555433 36889999997764 3579
Q ss_pred eEEEEeCC
Q 021911 215 DVIFSDVA 222 (305)
Q Consensus 215 D~V~~d~~ 222 (305)
|.+++|.|
T Consensus 125 d~cVsNlP 132 (315)
T KOG0820|consen 125 DGCVSNLP 132 (315)
T ss_pred ceeeccCC
Confidence 99999888
|
|
| >TIGR00006 S-adenosyl-methyltransferase MraW | Back alignment and domain information |
|---|
Probab=98.03 E-value=6e-05 Score=69.32 Aligned_cols=91 Identities=18% Similarity=0.180 Sum_probs=66.0
Q ss_pred HHHHHHccccccCCCCCCEEEEEecCCCccHHHHHhhhCCCcEEEEEeCChHHHHHHHHHHHcC-CCeEEEEccCCCCcc
Q 021911 128 LAAAVLGGVDNIWIKPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKR-TNVIPIIEDARHPAK 206 (305)
Q Consensus 128 l~a~ll~~l~~~~~~~g~~VLDlG~G~G~~t~~la~~~~~~~~V~avD~s~~~~~~l~~~a~~~-~nI~~~~~D~~~~~~ 206 (305)
|...+++.| .++++..++|.=+|.|..+..+++.+. .++|+|+|.++.++....+..+.. .++++++.++.+...
T Consensus 8 ll~Evl~~L---~~~~ggiyVD~TlG~GGHS~~iL~~l~-~g~vigiD~D~~Al~~ak~~L~~~~~R~~~i~~nF~~l~~ 83 (305)
T TIGR00006 8 LLDEVVEGL---NIKPDGIYIDCTLGFGGHSKAILEQLG-TGRLIGIDRDPQAIAFAKERLSDFEGRVVLIHDNFANFFE 83 (305)
T ss_pred hHHHHHHhc---CcCCCCEEEEeCCCChHHHHHHHHhCC-CCEEEEEcCCHHHHHHHHHHHhhcCCcEEEEeCCHHHHHH
Confidence 444444433 477889999999999999999999875 489999999995554444333332 479999999877654
Q ss_pred cc--cCCCcEeEEEEeCC
Q 021911 207 YR--MLVGMVDVIFSDVA 222 (305)
Q Consensus 207 ~~--~~~~~fD~V~~d~~ 222 (305)
+. ....+||.|++|.-
T Consensus 84 ~l~~~~~~~vDgIl~DLG 101 (305)
T TIGR00006 84 HLDELLVTKIDGILVDLG 101 (305)
T ss_pred HHHhcCCCcccEEEEecc
Confidence 31 12357999998764
|
Genetics paper in 1972 links mra cluster to peptidoglycan biosynthesis in E. coli. Seems to be common in proteobacteria.wn. |
| >PRK10611 chemotaxis methyltransferase CheR; Provisional | Back alignment and domain information |
|---|
Probab=98.00 E-value=1.9e-05 Score=72.10 Aligned_cols=102 Identities=20% Similarity=0.129 Sum_probs=68.3
Q ss_pred CCEEEEEecCCCccH----HHHHhhhC---CCcEEEEEeCChHHHHHHHHHH------------------H---------
Q 021911 144 GARVLYLGAASGTTV----SHVSDIVG---PNGVVYAVEFSHRSGRDLVNMA------------------K--------- 189 (305)
Q Consensus 144 g~~VLDlG~G~G~~t----~~la~~~~---~~~~V~avD~s~~~~~~l~~~a------------------~--------- 189 (305)
.-+|+-+||++|-=. ..+.+..+ ...+|+|+|+|+.+++.+.+-. .
T Consensus 116 ~irIWSAgCStGEEpYSlAmll~e~~~~~~~~~~I~atDIs~~aL~~Ar~G~Y~~~~~r~~p~~~~~ryF~~~~~~~~~~ 195 (287)
T PRK10611 116 EYRVWSAAASTGEEPYSIAMTLADTLGTAPGRWKVFASDIDTEVLEKARSGIYRQEELKTLSPQQLQRYFMRGTGPHEGL 195 (287)
T ss_pred CEEEEEccccCCHHHHHHHHHHHHhhcccCCCcEEEEEECCHHHHHHHHhCCCCHHHHhcCCHHHHHHHcccccCCCCce
Confidence 379999999999733 33333321 1458999999996654432210 0
Q ss_pred ------cCCCeEEEEccCCCCcccccCCCcEeEEEEeCC-----ChhHHHHHHHHHhccCCCCcEEEEEE
Q 021911 190 ------KRTNVIPIIEDARHPAKYRMLVGMVDVIFSDVA-----QPDQARILALNASYFLKAGGHFVISI 248 (305)
Q Consensus 190 ------~~~nI~~~~~D~~~~~~~~~~~~~fD~V~~d~~-----~~~~~~~l~~~a~~~LkpGG~lv~s~ 248 (305)
-+..|.|.+.|+.+.+.. ....||+|+|... .+.+.+++. ++++.|+|||+|++-.
T Consensus 196 ~~v~~~lr~~V~F~~~NL~~~~~~--~~~~fD~I~cRNvliyF~~~~~~~vl~-~l~~~L~pgG~L~lG~ 262 (287)
T PRK10611 196 VRVRQELANYVDFQQLNLLAKQWA--VPGPFDAIFCRNVMIYFDKTTQERILR-RFVPLLKPDGLLFAGH 262 (287)
T ss_pred EEEChHHHccCEEEcccCCCCCCc--cCCCcceeeHhhHHhcCCHHHHHHHHH-HHHHHhCCCcEEEEeC
Confidence 003567778887663211 2468999999333 456778887 9999999999998875
|
|
| >PF04816 DUF633: Family of unknown function (DUF633) ; InterPro: IPR006901 This is a family of uncharacterised bacterial proteins | Back alignment and domain information |
|---|
Probab=97.99 E-value=0.00018 Score=62.67 Aligned_cols=139 Identities=16% Similarity=0.071 Sum_probs=91.2
Q ss_pred EEEEecCCCccHHHHHhhhCCCcEEEEEeCChHHHHHHHHHHHcC---CCeEEEEccCCCCcccccCCCcEeEEE-EeCC
Q 021911 147 VLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKR---TNVIPIIEDARHPAKYRMLVGMVDVIF-SDVA 222 (305)
Q Consensus 147 VLDlG~G~G~~t~~la~~~~~~~~V~avD~s~~~~~~l~~~a~~~---~nI~~~~~D~~~~~~~~~~~~~fD~V~-~d~~ 222 (305)
|.|+||=.|.+...|.+. +....|+|+|+++..++.+.+..++. ..|++...|-....+. .+.+|+|+ +-|-
T Consensus 1 vaDIGtDHgyLpi~L~~~-~~~~~~ia~DI~~gpL~~A~~~i~~~~l~~~i~~rlgdGL~~l~~---~e~~d~ivIAGMG 76 (205)
T PF04816_consen 1 VADIGTDHGYLPIYLLKN-GKAPKAIAVDINPGPLEKAKENIAKYGLEDRIEVRLGDGLEVLKP---GEDVDTIVIAGMG 76 (205)
T ss_dssp EEEET-STTHHHHHHHHT-TSEEEEEEEESSHHHHHHHHHHHHHTT-TTTEEEEE-SGGGG--G---GG---EEEEEEE-
T ss_pred CceeccchhHHHHHHHhc-CCCCEEEEEeCCHHHHHHHHHHHHHcCCcccEEEEECCcccccCC---CCCCCEEEEecCC
Confidence 689999999999999987 33447999999997777777776665 5799999996554321 12367665 5666
Q ss_pred ChhHHHHHHHHHhccCCCCcEEEEEEcccccCCCCchhhhHHHHHHHHHHCCCcEeEEeecCCCCCceEEEEEEEcCCC
Q 021911 223 QPDQARILALNASYFLKAGGHFVISIKANCIDSTVPAEAVFQSEVKKLQQDQFKPFEQVTLEPFERDHACVVGGYRMPK 301 (305)
Q Consensus 223 ~~~~~~~l~~~a~~~LkpGG~lv~s~~~~~i~~~~~~~~v~~~~~~~l~~~Gf~~~e~~~l~p~~~~~~~vv~~~~~~~ 301 (305)
-..-.++|. +....++.--.|++.-. ... .....+|.++||.+.+..-+..-.+-|-++++.+...+
T Consensus 77 G~lI~~ILe-~~~~~~~~~~~lILqP~-------~~~----~~LR~~L~~~gf~I~~E~lv~e~~~~YeIi~~~~~~~~ 143 (205)
T PF04816_consen 77 GELIIEILE-AGPEKLSSAKRLILQPN-------THA----YELRRWLYENGFEIIDEDLVEENGRFYEIIVAERGEEK 143 (205)
T ss_dssp HHHHHHHHH-HTGGGGTT--EEEEEES-------S-H----HHHHHHHHHTTEEEEEEEEEEETTEEEEEEEEEESSS-
T ss_pred HHHHHHHHH-hhHHHhccCCeEEEeCC-------CCh----HHHHHHHHHCCCEEEEeEEEeECCEEEEEEEEEeCCCC
Confidence 667778887 77777777667877641 111 23367889999999876666555455666666665543
|
; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity; PDB: 3LEC_A 3KU1_G 3KR9_A 3GNL_B. |
| >PF03059 NAS: Nicotianamine synthase protein; InterPro: IPR004298 Nicotianamine synthase 2 | Back alignment and domain information |
|---|
Probab=97.84 E-value=0.00038 Score=63.12 Aligned_cols=143 Identities=13% Similarity=0.145 Sum_probs=73.3
Q ss_pred CCEEEEEecCCCccH-HHHHhhhCCCcEEEEEeCChHHHHHHHHHHHc----CCCeEEEEccCCCCcccccCCCcEeEEE
Q 021911 144 GARVLYLGAASGTTV-SHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKK----RTNVIPIIEDARHPAKYRMLVGMVDVIF 218 (305)
Q Consensus 144 g~~VLDlG~G~G~~t-~~la~~~~~~~~V~avD~s~~~~~~l~~~a~~----~~nI~~~~~D~~~~~~~~~~~~~fD~V~ 218 (305)
..+|+=||||+=-+| +.+++.......|+.+|+++.+.....+..+. ...+.+++.|+.+.... ...||+|+
T Consensus 121 p~rVaFIGSGPLPlT~i~la~~~~~~~~v~~iD~d~~A~~~a~~lv~~~~~L~~~m~f~~~d~~~~~~d---l~~~DvV~ 197 (276)
T PF03059_consen 121 PSRVAFIGSGPLPLTSIVLAKQHGPGARVHNIDIDPEANELARRLVASDLGLSKRMSFITADVLDVTYD---LKEYDVVF 197 (276)
T ss_dssp --EEEEE---SS-HHHHHHH--HTT--EEEEEESSHHHHHHHHHHHH---HH-SSEEEEES-GGGG-GG-------SEEE
T ss_pred cceEEEEcCCCcchHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhcccccCCeEEEecchhccccc---cccCCEEE
Confidence 359999999976555 45555545566899999999776555454442 26799999998765421 35899999
Q ss_pred EeCCCh----hHHHHHHHHHhccCCCCcEEEEEEcccccCCCCchhhhHHHHHHHHHHCCCcEeEEeecCCCCCceEEEE
Q 021911 219 SDVAQP----DQARILALNASYFLKAGGHFVISIKANCIDSTVPAEAVFQSEVKKLQQDQFKPFEQVTLEPFERDHACVV 294 (305)
Q Consensus 219 ~d~~~~----~~~~~l~~~a~~~LkpGG~lv~s~~~~~i~~~~~~~~v~~~~~~~l~~~Gf~~~e~~~l~p~~~~~~~vv 294 (305)
...... +..+++. ++.+.++||..+++-.. .- ....+...++.-.-.||++...++-.+- --+.+|+
T Consensus 198 lAalVg~~~e~K~~Il~-~l~~~m~~ga~l~~Rsa-~G------lR~~LYp~vd~~~l~gf~~~~~~hP~~~-ViNSvv~ 268 (276)
T PF03059_consen 198 LAALVGMDAEPKEEILE-HLAKHMAPGARLVVRSA-HG------LRSFLYPVVDPEDLRGFEVLAVVHPTDE-VINSVVF 268 (276)
T ss_dssp E-TT-S----SHHHHHH-HHHHHS-TTSEEEEEE---G------GGGGSS----TGGGTTEEEEEEE---TT----EEEE
T ss_pred EhhhcccccchHHHHHH-HHHhhCCCCcEEEEecc-hh------hHHHcCCCCChHHCCCeEEEEEECCCCC-ceeEEEE
Confidence 866644 7788888 99999999999888641 11 0111111111111138888766543322 3456666
Q ss_pred EEEc
Q 021911 295 GGYR 298 (305)
Q Consensus 295 ~~~~ 298 (305)
++|.
T Consensus 269 ~rk~ 272 (276)
T PF03059_consen 269 ARKK 272 (276)
T ss_dssp E---
T ss_pred EEec
Confidence 6664
|
5.1.43 from EC catalyzes the trimerization of S-adenosylmethionine to yield one molecule of nicotianamine. Nicotianamine has an important role in plant iron uptake mechanisms. Plants adopt two strategies (termed I and II) of iron acquisition. Strategy I is adopted by all higher plants except graminaceous plants, which adopt strategy II [, ]. In strategy I plants, the role of nicotianamine is not fully determined: possible roles include the formation of more stable complexes with ferrous than with ferric ion, which might serve as a sensor of the physiological status of iron within a plant, or which might be involved in the transport of iron []. In strategy II (graminaceous) plants, nicotianamine is the key intermediate (and nicotianamine synthase the key enzyme) in the synthesis of the mugineic family (the only known family in plants) of phytosiderophores. Phytosiderophores are iron chelators whose secretion by the roots is greatly increased in instances of iron deficiency []. The 3D structures of five example NAS from Methanothermobacter thermautotrophicus reveal the monomer to consist of a five-helical bundle N-terminal domain on top of a classic Rossmann fold C-terminal domain. The N-terminal domain is unique to the NAS family, whereas the C-terminal domain is homologous to the class I family of SAM-dependent methyltransferases. An active site is created at the interface of the two domains, at the rim of a large cavity that corresponds to the nucleotide binding site such as is found in other proteins adopting a Rossmann fold [].; GO: 0030410 nicotianamine synthase activity, 0030418 nicotianamine biosynthetic process; PDB: 3O31_B 3FPH_A 3FPJ_A 3FPE_B 3FPF_B 3FPG_B. |
| >PRK10742 putative methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=97.81 E-value=0.00012 Score=65.24 Aligned_cols=81 Identities=15% Similarity=0.059 Sum_probs=59.5
Q ss_pred CCCCCC--EEEEEecCCCccHHHHHhhhCCCcEEEEEeCChHHHHHHHHHHHc-----------CCCeEEEEccCCCCcc
Q 021911 140 WIKPGA--RVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKK-----------RTNVIPIIEDARHPAK 206 (305)
Q Consensus 140 ~~~~g~--~VLDlG~G~G~~t~~la~~~~~~~~V~avD~s~~~~~~l~~~a~~-----------~~nI~~~~~D~~~~~~ 206 (305)
.++++. +|||+.||+|..+..+|.+ .++|+.||-++....-+.+.++. ..+|++++.|+.....
T Consensus 83 glk~g~~p~VLD~TAGlG~Da~~las~---G~~V~~vEr~p~vaalL~dgL~ra~~~~~~~~~~~~ri~l~~~da~~~L~ 159 (250)
T PRK10742 83 GIKGDYLPDVVDATAGLGRDAFVLASV---GCRVRMLERNPVVAALLDDGLARGYADAEIGGWLQERLQLIHASSLTALT 159 (250)
T ss_pred CCCCCCCCEEEECCCCccHHHHHHHHc---CCEEEEEECCHHHHHHHHHHHHHhhhccccchhhhceEEEEeCcHHHHHh
Confidence 567777 9999999999999999988 35799999998554333222222 0368888888866543
Q ss_pred cccCCCcEeEEEEeCCChh
Q 021911 207 YRMLVGMVDVIFSDVAQPD 225 (305)
Q Consensus 207 ~~~~~~~fD~V~~d~~~~~ 225 (305)
. ...+||+|++|++.|.
T Consensus 160 ~--~~~~fDVVYlDPMfp~ 176 (250)
T PRK10742 160 D--ITPRPQVVYLDPMFPH 176 (250)
T ss_pred h--CCCCCcEEEECCCCCC
Confidence 2 2357999999999553
|
|
| >PF06962 rRNA_methylase: Putative rRNA methylase; InterPro: IPR010719 This family contains a number of putative rRNA methylases | Back alignment and domain information |
|---|
Probab=97.79 E-value=0.00021 Score=58.16 Aligned_cols=113 Identities=17% Similarity=0.257 Sum_probs=68.1
Q ss_pred EEEEEeCChHHHHHHHHHHHcC---CCeEEEEccCCCCcccccCCC-cEeEEEEeCC-----------Chh-HHHHHHHH
Q 021911 170 VVYAVEFSHRSGRDLVNMAKKR---TNVIPIIEDARHPAKYRMLVG-MVDVIFSDVA-----------QPD-QARILALN 233 (305)
Q Consensus 170 ~V~avD~s~~~~~~l~~~a~~~---~nI~~~~~D~~~~~~~~~~~~-~fD~V~~d~~-----------~~~-~~~~l~~~ 233 (305)
+|||+|+.+.+++...+..++. .+|.+++.+-.....+ ... ++|+|+.|.- .++ -...+. .
T Consensus 1 kVyaFDIQ~~Ai~~T~~rL~~~~~~~~v~li~~sHe~l~~~--i~~~~v~~~iFNLGYLPggDk~i~T~~~TTl~Al~-~ 77 (140)
T PF06962_consen 1 KVYAFDIQEEAIENTRERLEEAGLEDRVTLILDSHENLDEY--IPEGPVDAAIFNLGYLPGGDKSITTKPETTLKALE-A 77 (140)
T ss_dssp EEEEEES-HHHHHHHHHHHHHTT-GSGEEEEES-GGGGGGT----S--EEEEEEEESB-CTS-TTSB--HHHHHHHHH-H
T ss_pred CEEEEECHHHHHHHHHHHHHhcCCCCcEEEEECCHHHHHhh--CccCCcCEEEEECCcCCCCCCCCCcCcHHHHHHHH-H
Confidence 5999999998777776666655 5799998877766654 234 8999998765 233 334555 8
Q ss_pred HhccCCCCcEEEEEEcccccCCCCchhhhHHHHHHHHHHCCCcEeEEeecCCC
Q 021911 234 ASYFLKAGGHFVISIKANCIDSTVPAEAVFQSEVKKLQQDQFKPFEQVTLEPF 286 (305)
Q Consensus 234 a~~~LkpGG~lv~s~~~~~i~~~~~~~~v~~~~~~~l~~~Gf~~~e~~~l~p~ 286 (305)
+.++|+|||.+++....-.... ..+...+.+.+..|....|.+.....++--
T Consensus 78 al~lL~~gG~i~iv~Y~GH~gG-~eE~~av~~~~~~L~~~~~~V~~~~~~N~~ 129 (140)
T PF06962_consen 78 ALELLKPGGIITIVVYPGHPGG-KEESEAVEEFLASLDQKEFNVLKYQFINQK 129 (140)
T ss_dssp HHHHEEEEEEEEEEE--STCHH-HHHHHHHHHHHHTS-TTTEEEEEEEESS-S
T ss_pred HHHhhccCCEEEEEEeCCCCCC-HHHHHHHHHHHHhCCcceEEEEEEEccCCC
Confidence 8999999999999873211000 112223334445555556777766555443
|
; PDB: 3EEY_H 3LBY_A 3MTI_A. |
| >PF03141 Methyltransf_29: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR004159 Members of this family of hypothetical plant proteins are putative methyltransferases | Back alignment and domain information |
|---|
Probab=97.77 E-value=2.6e-05 Score=75.12 Aligned_cols=97 Identities=19% Similarity=0.271 Sum_probs=60.7
Q ss_pred CEEEEEecCCCccHHHHHhhhCCCcEEEEEeCChHHH-HHHHHHHHcCCCeEEEEccCCCCcccccCCCcEeEEEEeCC-
Q 021911 145 ARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSG-RDLVNMAKKRTNVIPIIEDARHPAKYRMLVGMVDVIFSDVA- 222 (305)
Q Consensus 145 ~~VLDlG~G~G~~t~~la~~~~~~~~V~avD~s~~~~-~~l~~~a~~~~nI~~~~~D~~~~~~~~~~~~~fD~V~~d~~- 222 (305)
..+||+|||.|+++.+|.++ .|+.+-+.+.-. ...++.|.++. |-.+..-+ ......+....||+|.|.-.
T Consensus 119 R~~LDvGcG~aSF~a~l~~r-----~V~t~s~a~~d~~~~qvqfaleRG-vpa~~~~~-~s~rLPfp~~~fDmvHcsrc~ 191 (506)
T PF03141_consen 119 RTALDVGCGVASFGAYLLER-----NVTTMSFAPNDEHEAQVQFALERG-VPAMIGVL-GSQRLPFPSNAFDMVHCSRCL 191 (506)
T ss_pred EEEEeccceeehhHHHHhhC-----CceEEEcccccCCchhhhhhhhcC-cchhhhhh-ccccccCCccchhhhhccccc
Confidence 47999999999999999987 455554443111 13455666552 32222221 11112234689999987433
Q ss_pred ---ChhHHHHHHHHHhccCCCCcEEEEEEc
Q 021911 223 ---QPDQARILALNASYFLKAGGHFVISIK 249 (305)
Q Consensus 223 ---~~~~~~~l~~~a~~~LkpGG~lv~s~~ 249 (305)
.++.. ++..++-++|+|||+|++|.+
T Consensus 192 i~W~~~~g-~~l~evdRvLRpGGyfv~S~p 220 (506)
T PF03141_consen 192 IPWHPNDG-FLLFEVDRVLRPGGYFVLSGP 220 (506)
T ss_pred ccchhccc-ceeehhhhhhccCceEEecCC
Confidence 23333 344489999999999999974
|
; GO: 0008168 methyltransferase activity |
| >PF07942 N2227: N2227-like protein; InterPro: IPR012901 This family features sequences that are similar to a region of hypothetical yeast gene product N2227 (P53934 from SWISSPROT) | Back alignment and domain information |
|---|
Probab=97.73 E-value=0.00057 Score=61.82 Aligned_cols=153 Identities=16% Similarity=0.133 Sum_probs=88.3
Q ss_pred hhHHHHHHHccccccCC-----CCCCEEEEEecCCCccHHHHHhhhCCCcEEEEEeCChHHHHHH---HHHHHcC-----
Q 021911 125 RSKLAAAVLGGVDNIWI-----KPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDL---VNMAKKR----- 191 (305)
Q Consensus 125 ~s~l~a~ll~~l~~~~~-----~~g~~VLDlG~G~G~~t~~la~~~~~~~~V~avD~s~~~~~~l---~~~a~~~----- 191 (305)
+......|+..|+...+ +...+||--|||-|.++..+|.. ...|.+.|+|-.++... ++...+.
T Consensus 33 R~~~~~~I~~~L~~~~p~~~~~~~~~~VLVPGsGLGRLa~Eia~~---G~~~~gnE~S~~Mll~s~fiLn~~~~~~~~~I 109 (270)
T PF07942_consen 33 RDPCYSPILDELESLFPPAGSDRSKIRVLVPGSGLGRLAWEIAKL---GYAVQGNEFSYFMLLASNFILNHCSQPNQFTI 109 (270)
T ss_pred HHHHHHHHHHHHHHhhcccccCCCccEEEEcCCCcchHHHHHhhc---cceEEEEEchHHHHHHHHHHHcccCCCCcEEE
Confidence 33444555555554433 33579999999999999999988 34899999997553221 1211110
Q ss_pred ----------------------------------CCeEEEEccCCCCcccccCCCcEeEEEEeCC---ChhHHHHHHHHH
Q 021911 192 ----------------------------------TNVIPIIEDARHPAKYRMLVGMVDVIFSDVA---QPDQARILALNA 234 (305)
Q Consensus 192 ----------------------------------~nI~~~~~D~~~~~~~~~~~~~fD~V~~d~~---~~~~~~~l~~~a 234 (305)
.++....+|+.+.........+||+|+...- .++-.+-+. .+
T Consensus 110 ~Pf~~~~sn~~~~~dqlr~v~iPDv~p~~~~~~~~~~sm~aGDF~e~y~~~~~~~~~d~VvT~FFIDTA~Ni~~Yi~-tI 188 (270)
T PF07942_consen 110 YPFVHSFSNQKSREDQLRPVRIPDVDPSSELPSPSNLSMCAGDFLEVYGPDENKGSFDVVVTCFFIDTAENIIEYIE-TI 188 (270)
T ss_pred ecceecccCCCCHHHhCCceEeCCcCcccccCCCCceeEecCccEEecCCcccCCcccEEEEEEEeechHHHHHHHH-HH
Confidence 1234444555444322111368999987544 455666666 88
Q ss_pred hccCCCCcEEEEEEcc--cccCC---CCchhhhHHHHHHHH-HHCCCcEeEEe
Q 021911 235 SYFLKAGGHFVISIKA--NCIDS---TVPAEAVFQSEVKKL-QQDQFKPFEQV 281 (305)
Q Consensus 235 ~~~LkpGG~lv~s~~~--~~i~~---~~~~~~v~~~~~~~l-~~~Gf~~~e~~ 281 (305)
.++|||||+.|=.=+. ...+. .+..-+.-.+|+..+ +..||++++..
T Consensus 189 ~~lLkpgG~WIN~GPLlyh~~~~~~~~~~sveLs~eEi~~l~~~~GF~~~~~~ 241 (270)
T PF07942_consen 189 EHLLKPGGYWINFGPLLYHFEPMSIPNEMSVELSLEEIKELIEKLGFEIEKEE 241 (270)
T ss_pred HHHhccCCEEEecCCccccCCCCCCCCCcccCCCHHHHHHHHHHCCCEEEEEE
Confidence 8999999955433210 00011 011122334555444 67899987644
|
This is thought to be expressed during meiosis and may be involved in the defence response to stressful conditions []. |
| >PF00145 DNA_methylase: C-5 cytosine-specific DNA methylase; InterPro: IPR001525 C-5 cytosine-specific DNA methylases (2 | Back alignment and domain information |
|---|
Probab=97.73 E-value=0.00029 Score=65.02 Aligned_cols=144 Identities=18% Similarity=0.119 Sum_probs=88.9
Q ss_pred EEEEEecCCCccHHHHHhhhCCCcEEEEEeCChHHHHHHHHHHHcCCCeEEEEccCCCCcccccCCCcEeEEEEeCCCh-
Q 021911 146 RVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKRTNVIPIIEDARHPAKYRMLVGMVDVIFSDVAQP- 224 (305)
Q Consensus 146 ~VLDlG~G~G~~t~~la~~~~~~~~V~avD~s~~~~~~l~~~a~~~~nI~~~~~D~~~~~~~~~~~~~fD~V~~d~~~~- 224 (305)
+++||+||.|.++.-+.+. .--.|.|+|+++. +.+..+.+-. .....|++......... .+|+|+..+||.
T Consensus 2 ~~~dlFsG~Gg~~~g~~~a--g~~~~~a~e~~~~----a~~~y~~N~~-~~~~~Di~~~~~~~l~~-~~D~l~ggpPCQ~ 73 (335)
T PF00145_consen 2 KVIDLFSGIGGFSLGLEQA--GFEVVWAVEIDPD----ACETYKANFP-EVICGDITEIDPSDLPK-DVDLLIGGPPCQG 73 (335)
T ss_dssp EEEEET-TTTHHHHHHHHT--TEEEEEEEESSHH----HHHHHHHHHT-EEEESHGGGCHHHHHHH-T-SEEEEE---TT
T ss_pred cEEEEccCccHHHHHHHhc--CcEEEEEeecCHH----HHHhhhhccc-ccccccccccccccccc-cceEEEeccCCce
Confidence 7999999999999988876 2336899999994 4444443322 88889998887543222 699999999853
Q ss_pred -----------h----HHHHHHHHHhccCCCCcEEEEEEcccccCCCCchhhhHHHHHHHHHHCCCcEeEEe-e---c-C
Q 021911 225 -----------D----QARILALNASYFLKAGGHFVISIKANCIDSTVPAEAVFQSEVKKLQQDQFKPFEQV-T---L-E 284 (305)
Q Consensus 225 -----------~----~~~~l~~~a~~~LkpGG~lv~s~~~~~i~~~~~~~~v~~~~~~~l~~~Gf~~~e~~-~---l-~ 284 (305)
+ ...-+. .+...++|. +|++.-. .-+.+. .....+...++.|++.||.+...+ + + -
T Consensus 74 fS~ag~~~~~~d~r~~L~~~~~-~~v~~~~Pk-~~~~ENV-~~l~~~-~~~~~~~~i~~~l~~lGY~v~~~vlna~~yGv 149 (335)
T PF00145_consen 74 FSIAGKRKGFDDPRNSLFFEFL-RIVKELKPK-YFLLENV-PGLLSS-KNGEVFKEILEELEELGYNVQWRVLNAADYGV 149 (335)
T ss_dssp TSTTSTHHCCCCHTTSHHHHHH-HHHHHHS-S-EEEEEEE-GGGGTG-GGHHHHHHHHHHHHHTTEEEEEEEEEGGGGTS
T ss_pred EeccccccccccccchhhHHHH-HHHhhccce-EEEeccc-ceeecc-ccccccccccccccccceeehhccccHhhCCC
Confidence 1 222222 455668896 4555421 112221 223456667788889999876544 2 2 5
Q ss_pred CCCCceEEEEEEEcCCC
Q 021911 285 PFERDHACVVGGYRMPK 301 (305)
Q Consensus 285 p~~~~~~~vv~~~~~~~ 301 (305)
|..|..+++||.++...
T Consensus 150 PQ~R~R~fivg~r~~~~ 166 (335)
T PF00145_consen 150 PQNRERVFIVGIRKDLP 166 (335)
T ss_dssp SBE-EEEEEEEEEGGG-
T ss_pred CCceeeEEEEEECCCCC
Confidence 67899999999987653
|
1.1.37 from EC) (C5 Mtase) are enzymes that specifically methylate the C-5 carbon of cytosines in DNA to produce C5-methylcytosine [, , ]. In mammalian cells, cytosine-specific methyltransferases methylate certain CpG sequences, which are believed to modulate gene expression and cell differentiation. In bacteria, these enzymes are a component of restriction-modification systems and serve as valuable tools for the manipulation of DNA [, ]. The structure of HhaI methyltransferase (M.HhaI) has been resolved to 2.5 A []: the molecule folds into 2 domains - a larger catalytic domain containing catalytic and cofactor binding sites, and a smaller DNA recognition domain.; GO: 0003677 DNA binding, 0006306 DNA methylation; PDB: 4DA4_A 3PT6_B 3AV6_A 3AV5_A 3AV4_A 3PT9_A 1DCT_A 3LX6_A 3ME5_A 2QRV_A .... |
| >KOG3987 consensus Uncharacterized conserved protein DREV/CGI-81 [Function unknown] | Back alignment and domain information |
|---|
Probab=97.68 E-value=8.9e-05 Score=63.70 Aligned_cols=90 Identities=23% Similarity=0.312 Sum_probs=66.7
Q ss_pred CCEEEEEecCCCccHHHHHhhhCCCcEEEEEeCChHHHHHHHHHHHcC-CCeEEEEccCCCCcccccCCCcEeEEEEeCC
Q 021911 144 GARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKR-TNVIPIIEDARHPAKYRMLVGMVDVIFSDVA 222 (305)
Q Consensus 144 g~~VLDlG~G~G~~t~~la~~~~~~~~V~avD~s~~~~~~l~~~a~~~-~nI~~~~~D~~~~~~~~~~~~~fD~V~~d~~ 222 (305)
..++||||+|.|-.+.+++..+. +|||.|+|. .|+...++. -||-.+. +..+. .-++|+|.|-..
T Consensus 113 ~~~lLDlGAGdGeit~~m~p~fe---evyATElS~----tMr~rL~kk~ynVl~~~-ew~~t------~~k~dli~clNl 178 (288)
T KOG3987|consen 113 PVTLLDLGAGDGEITLRMAPTFE---EVYATELSW----TMRDRLKKKNYNVLTEI-EWLQT------DVKLDLILCLNL 178 (288)
T ss_pred CeeEEeccCCCcchhhhhcchHH---HHHHHHhhH----HHHHHHhhcCCceeeeh-hhhhc------CceeehHHHHHH
Confidence 47999999999999999998875 699999999 677776654 2333222 22111 247899987333
Q ss_pred ---ChhHHHHHHHHHhccCCC-CcEEEEEE
Q 021911 223 ---QPDQARILALNASYFLKA-GGHFVISI 248 (305)
Q Consensus 223 ---~~~~~~~l~~~a~~~Lkp-GG~lv~s~ 248 (305)
|.+...++. .++.+|+| .|+++++.
T Consensus 179 LDRc~~p~kLL~-Di~~vl~psngrvivaL 207 (288)
T KOG3987|consen 179 LDRCFDPFKLLE-DIHLVLAPSNGRVIVAL 207 (288)
T ss_pred HHhhcChHHHHH-HHHHHhccCCCcEEEEE
Confidence 667777777 89999999 99888875
|
|
| >COG0286 HsdM Type I restriction-modification system methyltransferase subunit [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=97.65 E-value=0.00075 Score=66.40 Aligned_cols=123 Identities=16% Similarity=0.148 Sum_probs=79.0
Q ss_pred hhHHHHHHHccccccCCCCCCEEEEEecCCCccHHHHHhhhCC---CcEEEEEeCChHHHHHHHHHHHcC------C-Ce
Q 021911 125 RSKLAAAVLGGVDNIWIKPGARVLYLGAASGTTVSHVSDIVGP---NGVVYAVEFSHRSGRDLVNMAKKR------T-NV 194 (305)
Q Consensus 125 ~s~l~a~ll~~l~~~~~~~g~~VLDlG~G~G~~t~~la~~~~~---~~~V~avD~s~~~~~~l~~~a~~~------~-nI 194 (305)
.++|.+.++ .+.+..+|+|.+||+|.+....++.+.. ...+|+.|+++. ....++.+ . ++
T Consensus 174 v~~liv~~l------~~~~~~~i~DpacGsgg~l~~a~~~~~~~~~~~~~yGqE~~~~----t~~l~~mN~~lhgi~~~~ 243 (489)
T COG0286 174 VSELIVELL------DPEPRNSIYDPACGSGGMLLQAAKYLKRHQDEIFIYGQEINDT----TYRLAKMNLILHGIEGDA 243 (489)
T ss_pred HHHHHHHHc------CCCCCCeecCCCCchhHHHHHHHHHHHhhccceeEEEEeCCHH----HHHHHHHHHHHhCCCccc
Confidence 345555554 3567789999999999999999988753 367999999873 33333322 2 23
Q ss_pred EEEEccCCCCccc--ccCCCcEeEEEEeCCC---------------------------hhHHHHHHHHHhccCCCCcEEE
Q 021911 195 IPIIEDARHPAKY--RMLVGMVDVIFSDVAQ---------------------------PDQARILALNASYFLKAGGHFV 245 (305)
Q Consensus 195 ~~~~~D~~~~~~~--~~~~~~fD~V~~d~~~---------------------------~~~~~~l~~~a~~~LkpGG~lv 245 (305)
.....|....+.. ......||.|++++|. +.....+.+++...|+|+|+..
T Consensus 244 ~i~~~dtl~~~~~~~~~~~~~~D~viaNPPf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~af~~h~~~~l~~~g~aa 323 (489)
T COG0286 244 NIRHGDTLSNPKHDDKDDKGKFDFVIANPPFSGKGWGGDLLESEQDERFFFYGVFPTKNSADLAFLQHILYKLKPGGRAA 323 (489)
T ss_pred cccccccccCCcccccCCccceeEEEeCCCCCccccccccccccccccccccCCCCCCCchHHHHHHHHHHhcCCCceEE
Confidence 3444444333222 1234689999999991 0121344448999999998888
Q ss_pred EEEcccccCCCC
Q 021911 246 ISIKANCIDSTV 257 (305)
Q Consensus 246 ~s~~~~~i~~~~ 257 (305)
+.++...+....
T Consensus 324 ivl~~gvlfr~~ 335 (489)
T COG0286 324 IVLPDGVLFRGG 335 (489)
T ss_pred EEecCCcCcCCC
Confidence 887655544443
|
|
| >PF09243 Rsm22: Mitochondrial small ribosomal subunit Rsm22; InterPro: IPR015324 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms | Back alignment and domain information |
|---|
Probab=97.59 E-value=0.0014 Score=59.73 Aligned_cols=124 Identities=10% Similarity=-0.015 Sum_probs=67.2
Q ss_pred CCEEEEEecCCCccHHHHHhhhCCCcEEEEEeCChHHHHHHHHHHHcCCCeEEE--EccCC-CCcccccCCCcEeEEEEe
Q 021911 144 GARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKRTNVIPI--IEDAR-HPAKYRMLVGMVDVIFSD 220 (305)
Q Consensus 144 g~~VLDlG~G~G~~t~~la~~~~~~~~V~avD~s~~~~~~l~~~a~~~~nI~~~--~~D~~-~~~~~~~~~~~fD~V~~d 220 (305)
..+|||+|||+|+.+..+.+.+....++++||.|+.+.+-....++...+.... ..+.. +.. .....|+|++.
T Consensus 34 P~~vLD~GsGpGta~wAa~~~~~~~~~~~~vd~s~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~----~~~~~DLvi~s 109 (274)
T PF09243_consen 34 PRSVLDFGSGPGTALWAAREVWPSLKEYTCVDRSPEMLELAKRLLRAGPNNRNAEWRRVLYRDFL----PFPPDDLVIAS 109 (274)
T ss_pred CceEEEecCChHHHHHHHHHHhcCceeeeeecCCHHHHHHHHHHHhcccccccchhhhhhhcccc----cCCCCcEEEEe
Confidence 369999999999988888888765568999999995543333333322221111 11111 111 11234999874
Q ss_pred CC-----ChhHHHHHHHHHhccCCCCcEEEEEEcccccCCCCchhhhHHHHHHHHHHCCCcEeE
Q 021911 221 VA-----QPDQARILALNASYFLKAGGHFVISIKANCIDSTVPAEAVFQSEVKKLQQDQFKPFE 279 (305)
Q Consensus 221 ~~-----~~~~~~~l~~~a~~~LkpGG~lv~s~~~~~i~~~~~~~~v~~~~~~~l~~~Gf~~~e 279 (305)
.. .....+++. ++...+++ .|++..+. +..-.....+..+.|.+.++.+..
T Consensus 110 ~~L~EL~~~~r~~lv~-~LW~~~~~--~LVlVEpG-----t~~Gf~~i~~aR~~l~~~~~~v~A 165 (274)
T PF09243_consen 110 YVLNELPSAARAELVR-SLWNKTAP--VLVLVEPG-----TPAGFRRIAEARDQLLEKGAHVVA 165 (274)
T ss_pred hhhhcCCchHHHHHHH-HHHHhccC--cEEEEcCC-----ChHHHHHHHHHHHHHhhCCCceEC
Confidence 33 323333443 66666766 67666521 222223334444555555555543
|
The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. Rsm22 has been identified as a mitochondrial small ribosomal subunit [] and is a methyltransferase. In Schizosaccharomyces pombe (Fission yeast), Rsm22 is tandemly fused to Cox11 (a factor required for copper insertion into cytochrome oxidase) and the two proteins are proteolytically cleaved after import into the mitochondria []. This entry consists of mitochondrial Rsm22 and homologous sequences from bacteria.; GO: 0008168 methyltransferase activity, 0006412 translation |
| >PF04989 CmcI: Cephalosporin hydroxylase; InterPro: IPR007072 This entry contains Rhamnosyl O-methyltransferase which catalyses the O-methylation of the hydroxyl group located on C-2 of the first rhamnosyl residue linked to the phenolic group of glycosylated phenolphthiocerol dimycocerosates (PGL) and p-hydroxybenzoic acid derivatives (p-HBAD) [] | Back alignment and domain information |
|---|
Probab=97.54 E-value=0.00042 Score=60.03 Aligned_cols=103 Identities=17% Similarity=0.229 Sum_probs=62.2
Q ss_pred CCCCCEEEEEecCCCccHHHHHhhh---CCCcEEEEEeCChHHHHHHHHHHHcC----CCeEEEEccCCCCccccc---C
Q 021911 141 IKPGARVLYLGAASGTTVSHVSDIV---GPNGVVYAVEFSHRSGRDLVNMAKKR----TNVIPIIEDARHPAKYRM---L 210 (305)
Q Consensus 141 ~~~g~~VLDlG~G~G~~t~~la~~~---~~~~~V~avD~s~~~~~~l~~~a~~~----~nI~~~~~D~~~~~~~~~---~ 210 (305)
++| +.|+|+|...|..+..+|+++ +..++|++||++.+. ....+.+. ++|+++++|..++..... .
T Consensus 31 ~kP-d~IIE~Gi~~GGSli~~A~ml~~~~~~~~VigiDIdir~---~~~~a~e~hp~~~rI~~i~Gds~d~~~~~~v~~~ 106 (206)
T PF04989_consen 31 LKP-DLIIETGIAHGGSLIFWASMLELLGGKGKVIGIDIDIRP---HNRKAIESHPMSPRITFIQGDSIDPEIVDQVREL 106 (206)
T ss_dssp H---SEEEEE--TTSHHHHHHHHHHHHTT---EEEEEES-GTT-----S-GGGG----TTEEEEES-SSSTHHHHTSGSS
T ss_pred hCC-CeEEEEecCCCchHHHHHHHHHHhCCCceEEEEeCCcch---hchHHHhhccccCceEEEECCCCCHHHHHHHHHh
Confidence 455 899999999999999888654 567899999996421 11222232 789999999987753321 1
Q ss_pred --CCcEeEEEEeCC--ChhHHHHHHHHHhccCCCCcEEEEEE
Q 021911 211 --VGMVDVIFSDVA--QPDQARILALNASYFLKAGGHFVISI 248 (305)
Q Consensus 211 --~~~fD~V~~d~~--~~~~~~~l~~~a~~~LkpGG~lv~s~ 248 (305)
.....+|+.|.. .......|. ....+|++|+++++..
T Consensus 107 ~~~~~~vlVilDs~H~~~hvl~eL~-~y~plv~~G~Y~IVeD 147 (206)
T PF04989_consen 107 ASPPHPVLVILDSSHTHEHVLAELE-AYAPLVSPGSYLIVED 147 (206)
T ss_dssp ----SSEEEEESS----SSHHHHHH-HHHHT--TT-EEEETS
T ss_pred hccCCceEEEECCCccHHHHHHHHH-HhCccCCCCCEEEEEe
Confidence 134457888887 356677777 6889999999999864
|
Members of this family are about 220 amino acids long. It also includes the CmcI protein O85726 from SWISSPROT, which is presumed to represent the cephalosporin-7--hydroxylase []. However this has not been experimentally verified.; GO: 0008168 methyltransferase activity, 0008610 lipid biosynthetic process; PDB: 2BR4_B 2BR3_E 2BR5_E 2BM8_J 2BM9_E. |
| >PF01795 Methyltransf_5: MraW methylase family; InterPro: IPR002903 This is a family of S-adenosyl-L-methionine-dependent methyltransferases, which are found primarily, though not exclusively, in bacteria | Back alignment and domain information |
|---|
Probab=97.53 E-value=0.00041 Score=63.88 Aligned_cols=78 Identities=19% Similarity=0.224 Sum_probs=54.7
Q ss_pred CCCCCCEEEEEecCCCccHHHHHhhhCCCcEEEEEeCChHHHHHHHHHHHcC-----CCeEEEEccCCCCcccc--c-CC
Q 021911 140 WIKPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKR-----TNVIPIIEDARHPAKYR--M-LV 211 (305)
Q Consensus 140 ~~~~g~~VLDlG~G~G~~t~~la~~~~~~~~V~avD~s~~~~~~l~~~a~~~-----~nI~~~~~D~~~~~~~~--~-~~ 211 (305)
.++++...||.=-|.|..+..+++.+.+ ++|+++|-++ ++++.++++ .++.+++.++.+...+. . ..
T Consensus 17 ~~~~~g~~vD~T~G~GGHS~aiL~~~~~-~~li~~DrD~----~a~~~a~~~l~~~~~r~~~~~~~F~~l~~~l~~~~~~ 91 (310)
T PF01795_consen 17 NPKPGGIYVDCTFGGGGHSKAILEKLPN-GRLIGIDRDP----EALERAKERLKKFDDRFIFIHGNFSNLDEYLKELNGI 91 (310)
T ss_dssp T--TT-EEEETT-TTSHHHHHHHHT-TT--EEEEEES-H----HHHHHHHCCTCCCCTTEEEEES-GGGHHHHHHHTTTT
T ss_pred CcCCCceEEeecCCcHHHHHHHHHhCCC-CeEEEecCCH----HHHHHHHHHHhhccceEEEEeccHHHHHHHHHHccCC
Confidence 5788899999999999999999998855 9999999999 666666654 68999999987765432 1 24
Q ss_pred CcEeEEEEeCC
Q 021911 212 GMVDVIFSDVA 222 (305)
Q Consensus 212 ~~fD~V~~d~~ 222 (305)
..+|.|++|.-
T Consensus 92 ~~~dgiL~DLG 102 (310)
T PF01795_consen 92 NKVDGILFDLG 102 (310)
T ss_dssp S-EEEEEEE-S
T ss_pred CccCEEEEccc
Confidence 58999999875
|
The Escherichia coli protein is essential and has been linked to peptidoglycan biosynthesis [, ].; GO: 0008168 methyltransferase activity; PDB: 1N2X_A 1M6Y_A 1WG8_A 3TKA_A. |
| >KOG2940 consensus Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.53 E-value=0.00022 Score=62.26 Aligned_cols=96 Identities=17% Similarity=0.246 Sum_probs=71.2
Q ss_pred CCCEEEEEecCCCccHHHHHhhhCCCcEEEEEeCChHHHHHHHHHHHcC--CCe--EEEEccCCCCcccccCCCcEeEEE
Q 021911 143 PGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKR--TNV--IPIIEDARHPAKYRMLVGMVDVIF 218 (305)
Q Consensus 143 ~g~~VLDlG~G~G~~t~~la~~~~~~~~V~avD~s~~~~~~l~~~a~~~--~nI--~~~~~D~~~~~~~~~~~~~fD~V~ 218 (305)
....++||||+-|....||... .-.+++-+|.|. +|++.++.. +.| +..+.|-...+ +..++||+|+
T Consensus 72 ~fp~a~diGcs~G~v~rhl~~e--~vekli~~DtS~----~M~~s~~~~qdp~i~~~~~v~DEE~Ld---f~ens~DLii 142 (325)
T KOG2940|consen 72 SFPTAFDIGCSLGAVKRHLRGE--GVEKLIMMDTSY----DMIKSCRDAQDPSIETSYFVGDEEFLD---FKENSVDLII 142 (325)
T ss_pred hCcceeecccchhhhhHHHHhc--chhheeeeecch----HHHHHhhccCCCceEEEEEecchhccc---ccccchhhhh
Confidence 3578999999999999999866 234789999999 788877765 333 34556655444 3468999999
Q ss_pred EeCCCh---hHHHHHHHHHhccCCCCcEEEEEE
Q 021911 219 SDVAQP---DQARILALNASYFLKAGGHFVISI 248 (305)
Q Consensus 219 ~d~~~~---~~~~~l~~~a~~~LkpGG~lv~s~ 248 (305)
+.+... +...-+. +++..|||+|.|+-+.
T Consensus 143 sSlslHW~NdLPg~m~-~ck~~lKPDg~Fiasm 174 (325)
T KOG2940|consen 143 SSLSLHWTNDLPGSMI-QCKLALKPDGLFIASM 174 (325)
T ss_pred hhhhhhhhccCchHHH-HHHHhcCCCccchhHH
Confidence 988732 2334444 8899999999998875
|
|
| >COG0275 Predicted S-adenosylmethionine-dependent methyltransferase involved in cell envelope biogenesis [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=97.52 E-value=0.0014 Score=59.62 Aligned_cols=93 Identities=15% Similarity=0.068 Sum_probs=68.9
Q ss_pred HHHHHHHccccccCCCCCCEEEEEecCCCccHHHHHhhhCCCcEEEEEeCChHHHHHHHHHHHcC-CCeEEEEccCCCCc
Q 021911 127 KLAAAVLGGVDNIWIKPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKR-TNVIPIIEDARHPA 205 (305)
Q Consensus 127 ~l~a~ll~~l~~~~~~~g~~VLDlG~G~G~~t~~la~~~~~~~~V~avD~s~~~~~~l~~~a~~~-~nI~~~~~D~~~~~ 205 (305)
-|...++..| .++|+...||.--|.|..+..+.+.+.+.++++++|-++.++....+..+.. .++.+++..+.+..
T Consensus 10 VLl~E~i~~L---~~~~~giyiD~TlG~GGHS~~iL~~l~~~~~li~~DrD~~Ai~~a~~~l~~~~~r~~~v~~~F~~l~ 86 (314)
T COG0275 10 VLLNEVVELL---APKPDGIYIDGTLGAGGHSRAILEKLPDLGRLIGIDRDPQAIAIAKERLKEFDGRVTLVHGNFANLA 86 (314)
T ss_pred hHHHHHHHhc---ccCCCcEEEEecCCCcHhHHHHHHhCCCCCeEEEEcCCHHHHHHHHHHhhccCCcEEEEeCcHHHHH
Confidence 3444444433 5888999999999999999999999877889999999996555555544443 68999998876654
Q ss_pred ccc--cCCCcEeEEEEeCC
Q 021911 206 KYR--MLVGMVDVIFSDVA 222 (305)
Q Consensus 206 ~~~--~~~~~fD~V~~d~~ 222 (305)
... .....||-|+.|.-
T Consensus 87 ~~l~~~~i~~vDGiL~DLG 105 (314)
T COG0275 87 EALKELGIGKVDGILLDLG 105 (314)
T ss_pred HHHHhcCCCceeEEEEecc
Confidence 331 12468999998664
|
|
| >PF13679 Methyltransf_32: Methyltransferase domain | Back alignment and domain information |
|---|
Probab=97.52 E-value=0.001 Score=54.26 Aligned_cols=106 Identities=16% Similarity=0.149 Sum_probs=64.0
Q ss_pred CCCCCEEEEEecCCCccHHHHHhhh---CCCcEEEEEeCChHHHHHHHHHHHcC-----CCeEEEEccCCCCcccccCCC
Q 021911 141 IKPGARVLYLGAASGTTVSHVSDIV---GPNGVVYAVEFSHRSGRDLVNMAKKR-----TNVIPIIEDARHPAKYRMLVG 212 (305)
Q Consensus 141 ~~~g~~VLDlG~G~G~~t~~la~~~---~~~~~V~avD~s~~~~~~l~~~a~~~-----~nI~~~~~D~~~~~~~~~~~~ 212 (305)
..+...|+|+|||-|.++..|+..+ .+..+|++||.++...+.+.+.+++. .++.++..++..... ..
T Consensus 23 ~~~~~~vvD~GsG~GyLs~~La~~l~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~ 98 (141)
T PF13679_consen 23 SKRCITVVDLGSGKGYLSRALAHLLCNSSPNLRVLGIDCNESLVESAQKRAQKLGSDLEKRLSFIQGDIADESS----SD 98 (141)
T ss_pred cCCCCEEEEeCCChhHHHHHHHHHHHhcCCCCeEEEEECCcHHHHHHHHHHHHhcchhhccchhhccchhhhcc----cC
Confidence 3667899999999999999999943 35679999999987666655555432 344555544433211 34
Q ss_pred cEeEEEEeCCChhHHHHHHHHHhccCCCCcEEEEEEcccccC
Q 021911 213 MVDVIFSDVAQPDQARILALNASYFLKAGGHFVISIKANCID 254 (305)
Q Consensus 213 ~fD~V~~d~~~~~~~~~l~~~a~~~LkpGG~lv~s~~~~~i~ 254 (305)
..++++.==+|-+....+...+.+ ++-.+++.. .||..
T Consensus 99 ~~~~~vgLHaCG~Ls~~~l~~~~~---~~~~~l~~v-pCCyh 136 (141)
T PF13679_consen 99 PPDILVGLHACGDLSDRALRLFIR---PNARFLVLV-PCCYH 136 (141)
T ss_pred CCeEEEEeecccchHHHHHHHHHH---cCCCEEEEc-CCccc
Confidence 566666533444433333313223 554554443 37743
|
|
| >KOG2730 consensus Methylase [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.47 E-value=0.00016 Score=62.76 Aligned_cols=73 Identities=12% Similarity=0.016 Sum_probs=55.0
Q ss_pred CCCEEEEEecCCCccHHHHHhhhCCCcEEEEEeCChHHHHHHHHHHHcC-------CCeEEEEccCCCCccc-ccCCCcE
Q 021911 143 PGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKR-------TNVIPIIEDARHPAKY-RMLVGMV 214 (305)
Q Consensus 143 ~g~~VLDlG~G~G~~t~~la~~~~~~~~V~avD~s~~~~~~l~~~a~~~-------~nI~~~~~D~~~~~~~-~~~~~~f 214 (305)
....|+|..||-|..+...|... ..|+++|++| .-+.+|+++ +.|.|+++|+.+.... ......+
T Consensus 94 ~~~~iidaf~g~gGntiqfa~~~---~~VisIdiDP----ikIa~AkhNaeiYGI~~rItFI~GD~ld~~~~lq~~K~~~ 166 (263)
T KOG2730|consen 94 NAEVIVDAFCGVGGNTIQFALQG---PYVIAIDIDP----VKIACARHNAEVYGVPDRITFICGDFLDLASKLKADKIKY 166 (263)
T ss_pred CcchhhhhhhcCCchHHHHHHhC---CeEEEEeccH----HHHHHHhccceeecCCceeEEEechHHHHHHHHhhhhhee
Confidence 34789999999999999999874 3799999999 445555544 6899999998665322 1223468
Q ss_pred eEEEEeCC
Q 021911 215 DVIFSDVA 222 (305)
Q Consensus 215 D~V~~d~~ 222 (305)
|+|+..+|
T Consensus 167 ~~vf~spp 174 (263)
T KOG2730|consen 167 DCVFLSPP 174 (263)
T ss_pred eeeecCCC
Confidence 89998887
|
|
| >PF04672 Methyltransf_19: S-adenosyl methyltransferase; InterPro: IPR006764 This is a family of uncharacterised proteins | Back alignment and domain information |
|---|
Probab=97.33 E-value=0.0033 Score=56.63 Aligned_cols=103 Identities=22% Similarity=0.198 Sum_probs=62.6
Q ss_pred CEEEEEecCCC--ccHHHHHhhhCCCcEEEEEeCChHHHHHHHHHHHcCCC--eEEEEccCCCCcccc---------cCC
Q 021911 145 ARVLYLGAASG--TTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKRTN--VIPIIEDARHPAKYR---------MLV 211 (305)
Q Consensus 145 ~~VLDlG~G~G--~~t~~la~~~~~~~~V~avD~s~~~~~~l~~~a~~~~n--I~~~~~D~~~~~~~~---------~~~ 211 (305)
...||||||-- ..+.++|+.+.|.++|+-||++|-.+..........++ ..++++|++++.... .+.
T Consensus 70 rQFLDlGsGlPT~~nvHevAq~~~P~aRVVYVD~DPvv~ah~ralL~~~~~g~t~~v~aD~r~p~~iL~~p~~~~~lD~~ 149 (267)
T PF04672_consen 70 RQFLDLGSGLPTAGNVHEVAQRVAPDARVVYVDNDPVVLAHARALLADNPRGRTAYVQADLRDPEAILAHPEVRGLLDFD 149 (267)
T ss_dssp -EEEEET--S--SS-HHHHHHHH-TT-EEEEEESSHHHHHCCHHHHTT-TTSEEEEEE--TT-HHHHHCSHHHHCC--TT
T ss_pred ceEEEcccCCCCCCCHhHHHHhhCCCceEEEECCCchHHHHHHhhhcCCCCccEEEEeCCCCCHHHHhcCHHHHhcCCCC
Confidence 68999999944 37888999989999999999999554444444444466 889999999875321 112
Q ss_pred CcEeEEEEeCC----C-hhHHHHHHHHHhccCCCCcEEEEEE
Q 021911 212 GMVDVIFSDVA----Q-PDQARILALNASYFLKAGGHFVISI 248 (305)
Q Consensus 212 ~~fD~V~~d~~----~-~~~~~~l~~~a~~~LkpGG~lv~s~ 248 (305)
..+=++++.+. . .+...++. .....|.||.+|++|.
T Consensus 150 rPVavll~~vLh~v~D~~dp~~iv~-~l~d~lapGS~L~ish 190 (267)
T PF04672_consen 150 RPVAVLLVAVLHFVPDDDDPAGIVA-RLRDALAPGSYLAISH 190 (267)
T ss_dssp S--EEEECT-GGGS-CGCTHHHHHH-HHHCCS-TT-EEEEEE
T ss_pred CCeeeeeeeeeccCCCccCHHHHHH-HHHHhCCCCceEEEEe
Confidence 34445554332 2 45667776 9999999999999998
|
; PDB: 3GIW_A 3GO4_A 2QE6_A. |
| >COG3897 Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.30 E-value=0.00082 Score=57.42 Aligned_cols=96 Identities=21% Similarity=0.183 Sum_probs=62.0
Q ss_pred CCCEEEEEecCCCccHHHHHhhhCCCcEEEEEeCChHHHHHHHHHHHcC-CCeEEEEccCCCCcccccCCCcEeEEEE-e
Q 021911 143 PGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKR-TNVIPIIEDARHPAKYRMLVGMVDVIFS-D 220 (305)
Q Consensus 143 ~g~~VLDlG~G~G~~t~~la~~~~~~~~V~avD~s~~~~~~l~~~a~~~-~nI~~~~~D~~~~~~~~~~~~~fD~V~~-d 220 (305)
.+.+|||+|+|+|..+...+.. ....|++.|+.+.....+--+++.+ -+|.++..|... . +..||+|++ |
T Consensus 79 rgkrVLd~gagsgLvaIAaa~a--GA~~v~a~d~~P~~~~ai~lNa~angv~i~~~~~d~~g-~-----~~~~Dl~LagD 150 (218)
T COG3897 79 RGKRVLDLGAGSGLVAIAAARA--GAAEVVAADIDPWLEQAIRLNAAANGVSILFTHADLIG-S-----PPAFDLLLAGD 150 (218)
T ss_pred ccceeeecccccChHHHHHHHh--hhHHHHhcCCChHHHHHhhcchhhccceeEEeeccccC-C-----CcceeEEEeec
Confidence 3799999999999888887776 4568999999974333322223333 467777778765 2 468999997 4
Q ss_pred CC-ChhHHHHHHHHHhccCCCCcEEEEE
Q 021911 221 VA-QPDQARILALNASYFLKAGGHFVIS 247 (305)
Q Consensus 221 ~~-~~~~~~~l~~~a~~~LkpGG~lv~s 247 (305)
+. .......+. .....|+..|.-++.
T Consensus 151 lfy~~~~a~~l~-~~~~~l~~~g~~vlv 177 (218)
T COG3897 151 LFYNHTEADRLI-PWKDRLAEAGAAVLV 177 (218)
T ss_pred eecCchHHHHHH-HHHHHHHhCCCEEEE
Confidence 43 222333333 355566665555553
|
|
| >PF11599 AviRa: RRNA methyltransferase AviRa; InterPro: IPR024268 This family of proteins includes the methyltransferase AviRa from Streptomyces viridochromogenes | Back alignment and domain information |
|---|
Probab=97.29 E-value=0.0013 Score=57.03 Aligned_cols=106 Identities=14% Similarity=0.060 Sum_probs=57.6
Q ss_pred CCCEEEEEecCCCccHHHHHhhhCCC-cEEEEEeCChHHHHHHHHHHH----------------------c---------
Q 021911 143 PGARVLYLGAASGTTVSHVSDIVGPN-GVVYAVEFSHRSGRDLVNMAK----------------------K--------- 190 (305)
Q Consensus 143 ~g~~VLDlG~G~G~~t~~la~~~~~~-~~V~avD~s~~~~~~l~~~a~----------------------~--------- 190 (305)
..-++.|-|||+|++...+.-..... ..|++-|+++.+++-..++.. +
T Consensus 51 ~p~tLyDPCCG~gyLLTVlGLLh~~~l~~v~aSDId~~aL~lA~kNL~LLt~eGL~~R~~eL~~~~e~~~kps~~eAl~s 130 (246)
T PF11599_consen 51 GPYTLYDPCCGSGYLLTVLGLLHRRRLRRVYASDIDEDALELARKNLSLLTPEGLEARREELRELYEQYGKPSHAEALES 130 (246)
T ss_dssp S-EEEEETT-TTSHHHHHHHHHTGGGEEEEEEEES-HHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHH--HHHHHHHHH
T ss_pred CCeeeeccCCCccHHHHHHHHhhhHHHHhHhcccCCHHHHHHHHHhhhhccHhHHHHHHHHHHHHHHHcCCchHHHHHHH
Confidence 34699999999999988887653322 379999999855432211110 0
Q ss_pred --C-----------CCeEEEEccCCCCcccc--cCCCcEeEEEEeCCC-----------hhHH-HHHHHHHhccCCCCcE
Q 021911 191 --R-----------TNVIPIIEDARHPAKYR--MLVGMVDVIFSDVAQ-----------PDQA-RILALNASYFLKAGGH 243 (305)
Q Consensus 191 --~-----------~nI~~~~~D~~~~~~~~--~~~~~fD~V~~d~~~-----------~~~~-~~l~~~a~~~LkpGG~ 243 (305)
+ ......+.|++++.... ......|+|+.|.|. .+.. .+|. +++..|-+...
T Consensus 131 A~RL~~~l~~~g~~~p~~~~~aDvf~~~~~~~~~~~~~~diViTDlPYG~~t~W~g~~~~~p~~~ml~-~l~~vLp~~sV 209 (246)
T PF11599_consen 131 ADRLRERLAAEGGDEPHAIFRADVFDPSPLAVLDAGFTPDIVITDLPYGEMTSWQGEGSGGPVAQMLN-SLAPVLPERSV 209 (246)
T ss_dssp HHHHHHHHHHTTSS--EEEEE--TT-HHHHHHHHTT---SEEEEE--CCCSSSTTS---HHHHHHHHH-HHHCCS-TT-E
T ss_pred HHHHHHHHHhcCCCCchhheeecccCCchhhhhccCCCCCEEEecCCCcccccccCCCCCCcHHHHHH-HHHhhCCCCcE
Confidence 0 12457778998865421 122357999999991 1233 4454 89999976777
Q ss_pred EEEEEc
Q 021911 244 FVISIK 249 (305)
Q Consensus 244 lv~s~~ 249 (305)
++++.+
T Consensus 210 V~v~~k 215 (246)
T PF11599_consen 210 VAVSDK 215 (246)
T ss_dssp EEEEES
T ss_pred EEEecC
Confidence 777653
|
This protein mediates the resistance to the antibiotic avilamycin. AviRa methylates a specific guanine base within the peptidyl-transferase loop of the 23S ribosomal RNA [].; PDB: 1O9H_A 1O9G_A. |
| >COG0500 SmtA SAM-dependent methyltransferases [Secondary metabolites biosynthesis, transport, and catabolism / General function prediction only] | Back alignment and domain information |
|---|
Probab=97.26 E-value=0.0053 Score=48.11 Aligned_cols=99 Identities=22% Similarity=0.197 Sum_probs=62.3
Q ss_pred EEEEecCCCccHHHHHhhhCCCcEEEEEeCChHHHHHHHHHHHcCCC--eEEEEccCCCC-cccccCC-CcEeEEEEeCC
Q 021911 147 VLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKRTN--VIPIIEDARHP-AKYRMLV-GMVDVIFSDVA 222 (305)
Q Consensus 147 VLDlG~G~G~~t~~la~~~~~~~~V~avD~s~~~~~~l~~~a~~~~n--I~~~~~D~~~~-~~~~~~~-~~fD~V~~d~~ 222 (305)
+||++||+|..+ .++........++++|+++..+............ +.++..|.... .+. .. ..||++.+...
T Consensus 52 ~ld~~~g~g~~~-~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~d~~~~~~~ 128 (257)
T COG0500 52 VLDIGCGTGRLA-LLARLGGRGAYVVGVDLSPEMLALARARAEGAGLGLVDFVVADALGGVLPF--EDSASFDLVISLLV 128 (257)
T ss_pred eEEecCCcCHHH-HHHHhCCCCceEEEEeCCHHHHHHHHhhhhhcCCCceEEEEeccccCCCCC--CCCCceeEEeeeee
Confidence 999999999987 5555432223788999999554442222211111 57788887652 211 12 37999943333
Q ss_pred C--hhHHHHHHHHHhccCCCCcEEEEEEc
Q 021911 223 Q--PDQARILALNASYFLKAGGHFVISIK 249 (305)
Q Consensus 223 ~--~~~~~~l~~~a~~~LkpGG~lv~s~~ 249 (305)
. ......+. ++.+.|+|+|.+++...
T Consensus 129 ~~~~~~~~~~~-~~~~~l~~~g~~~~~~~ 156 (257)
T COG0500 129 LHLLPPAKALR-ELLRVLKPGGRLVLSDL 156 (257)
T ss_pred hhcCCHHHHHH-HHHHhcCCCcEEEEEec
Confidence 1 12455565 88999999999999874
|
|
| >TIGR00675 dcm DNA-methyltransferase (dcm) | Back alignment and domain information |
|---|
Probab=97.25 E-value=0.0045 Score=57.54 Aligned_cols=139 Identities=16% Similarity=0.170 Sum_probs=84.9
Q ss_pred EEEEecCCCccHHHHHhhhCCCcEEEEEeCChHHHHHHHHHHHcC-CCeEEEEccCCCCcccccCCCcEeEEEEeCCCh-
Q 021911 147 VLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKR-TNVIPIIEDARHPAKYRMLVGMVDVIFSDVAQP- 224 (305)
Q Consensus 147 VLDlG~G~G~~t~~la~~~~~~~~V~avD~s~~~~~~l~~~a~~~-~nI~~~~~D~~~~~~~~~~~~~fD~V~~d~~~~- 224 (305)
||||.||.|.++.-+.+. + --.|.++|+++.+ .+..+.+ ++ .+++.|+.+..... ...+|+++..+||.
T Consensus 1 vidLF~G~GG~~~Gl~~a-G-~~~~~a~e~~~~a----~~ty~~N~~~-~~~~~Di~~~~~~~--~~~~dvl~gg~PCq~ 71 (315)
T TIGR00675 1 FIDLFAGIGGIRLGFEQA-G-FKCVFASEIDKYA----QKTYEANFGN-KVPFGDITKISPSD--IPDFDILLGGFPCQP 71 (315)
T ss_pred CEEEecCccHHHHHHHHc-C-CeEEEEEeCCHHH----HHHHHHhCCC-CCCccChhhhhhhh--CCCcCEEEecCCCcc
Confidence 689999999999888765 2 2257789999844 3333332 33 45667887765322 24689999988852
Q ss_pred -----------hHH-HHHH--HHHhccCCCCcEEEEEEcccccCCCCchhhhHHHHHHHHHHCCCcEeEEe-e---c-CC
Q 021911 225 -----------DQA-RILA--LNASYFLKAGGHFVISIKANCIDSTVPAEAVFQSEVKKLQQDQFKPFEQV-T---L-EP 285 (305)
Q Consensus 225 -----------~~~-~~l~--~~a~~~LkpGG~lv~s~~~~~i~~~~~~~~v~~~~~~~l~~~Gf~~~e~~-~---l-~p 285 (305)
+.. .++. ..+.+.++|. .+++.-... +.. ......+...+..|+..||.+...+ . + -|
T Consensus 72 fS~ag~~~~~~d~r~~L~~~~~r~i~~~~P~-~~v~ENV~~-l~~-~~~~~~~~~i~~~l~~~GY~v~~~~l~a~dyGvP 148 (315)
T TIGR00675 72 FSIAGKRKGFEDTRGTLFFEIVRILKEKKPK-FFLLENVKG-LVS-HDKGRTFKVIIETLEELGYKVYYKVLNAKDFGVP 148 (315)
T ss_pred cchhcccCCCCCchhhHHHHHHHHHhhcCCC-EEEeeccHH-HHh-cccchHHHHHHHHHHhCCCEEEEEEEcHHHCCCC
Confidence 222 2222 1334456786 343332111 111 1112345666788888999876543 2 2 57
Q ss_pred CCCceEEEEEEE
Q 021911 286 FERDHACVVGGY 297 (305)
Q Consensus 286 ~~~~~~~vv~~~ 297 (305)
..|..++++|.+
T Consensus 149 Q~R~R~f~ia~r 160 (315)
T TIGR00675 149 QNRERIYIVGFR 160 (315)
T ss_pred CCccEEEEEEEe
Confidence 789999999987
|
All proteins in this family for which functions are known are DNA-cytosine methyltransferases. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). |
| >TIGR01444 fkbM_fam methyltransferase, FkbM family | Back alignment and domain information |
|---|
Probab=97.25 E-value=0.00081 Score=54.49 Aligned_cols=57 Identities=23% Similarity=0.119 Sum_probs=45.8
Q ss_pred EEEEEecCCCccHHHHHhhhCCCcEEEEEeCChHHHHHHHHHHHcC--CCeEEEEccCCC
Q 021911 146 RVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKR--TNVIPIIEDARH 203 (305)
Q Consensus 146 ~VLDlG~G~G~~t~~la~~~~~~~~V~avD~s~~~~~~l~~~a~~~--~nI~~~~~D~~~ 203 (305)
.|||+||+.|.++..++... +..+|+++|.++.....+.+..+.+ +++.++...+.+
T Consensus 1 ~vlDiGa~~G~~~~~~~~~~-~~~~v~~~E~~~~~~~~l~~~~~~n~~~~v~~~~~al~~ 59 (143)
T TIGR01444 1 VVIDVGANIGDTSLYFARKG-AEGRVIAFEPLPDAYEILEENVKLNNLPNVVLLNAAVGD 59 (143)
T ss_pred CEEEccCCccHHHHHHHHhC-CCCEEEEEecCHHHHHHHHHHHHHcCCCcEEEEEeeeeC
Confidence 48999999999999999874 5669999999998877777776654 568877776644
|
Members of this family are characterized by two well-conserved short regions separated by a variable in both sequence and length. The first of the two regions is found in a large number of proteins outside this subfamily, a number of which have been characterized as methyltransferases. One member of the present family, FkbM, was shown to be required for a specific methylation in the biosynthesis of the immunosuppressant FK506 in Streptomyces strain MA6548. |
| >KOG2671 consensus Putative RNA methylase [Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=97.17 E-value=0.00094 Score=61.59 Aligned_cols=117 Identities=21% Similarity=0.206 Sum_probs=78.9
Q ss_pred cCchhhHHHHHHHccccccCCCCCCEEEEEecCCCccHHHHHhhhCCCcEEEEEeCChHHHHH-------HHHHHHcC--
Q 021911 121 WNPFRSKLAAAVLGGVDNIWIKPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRD-------LVNMAKKR-- 191 (305)
Q Consensus 121 ~~~~~s~l~a~ll~~l~~~~~~~g~~VLDlG~G~G~~t~~la~~~~~~~~V~avD~s~~~~~~-------l~~~a~~~-- 191 (305)
+++-.|-+.+.+. ..+||+.|+|-..|||.+....|.. + +.|++.||+-+.+++ ...+.++.
T Consensus 192 mDAeLSli~AN~A------mv~pGdivyDPFVGTGslLvsaa~F-G--a~viGtDIDyr~vragrg~~~si~aNFkQYg~ 262 (421)
T KOG2671|consen 192 MDAELSLIMANQA------MVKPGDIVYDPFVGTGSLLVSAAHF-G--AYVIGTDIDYRTVRAGRGEDESIKANFKQYGS 262 (421)
T ss_pred cchhHHHHHhhhh------ccCCCCEEecCccccCceeeehhhh-c--ceeeccccchheeecccCCCcchhHhHHHhCC
Confidence 3443444444443 5789999999999999998887765 3 589999998755441 11122222
Q ss_pred --CCeEEEEccCCCCcccccCCCcEeEEEEeCC---------------------------Ch--h-------HHHHHHHH
Q 021911 192 --TNVIPIIEDARHPAKYRMLVGMVDVIFSDVA---------------------------QP--D-------QARILALN 233 (305)
Q Consensus 192 --~nI~~~~~D~~~~~~~~~~~~~fD~V~~d~~---------------------------~~--~-------~~~~l~~~ 233 (305)
.-+.+..+|.+.++... ...||+|+||+| +| . ...+|. -
T Consensus 263 ~~~fldvl~~D~sn~~~rs--n~~fDaIvcDPPYGVRe~~rk~~~k~~~r~~~~~~~~~h~p~~~~ysl~~~v~dll~-f 339 (421)
T KOG2671|consen 263 SSQFLDVLTADFSNPPLRS--NLKFDAIVCDPPYGVREGARKTGKKKSVRTTEESSRGDHYPSTEQYSLSSLVYDLLC-F 339 (421)
T ss_pred cchhhheeeecccCcchhh--cceeeEEEeCCCcchhhhhhhhcccCcccCcccccccccCCccchhHHHHHHhhHHH-h
Confidence 23567788988775432 458999999999 11 1 122333 5
Q ss_pred HhccCCCCcEEEEEEc
Q 021911 234 ASYFLKAGGHFVISIK 249 (305)
Q Consensus 234 a~~~LkpGG~lv~s~~ 249 (305)
+.+.|..||+|++-.+
T Consensus 340 ss~~L~~ggrlv~w~p 355 (421)
T KOG2671|consen 340 SSRRLVDGGRLVFWLP 355 (421)
T ss_pred hHhhhhcCceEEEecC
Confidence 7789999999999764
|
|
| >KOG2352 consensus Predicted spermine/spermidine synthase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.15 E-value=0.0023 Score=61.72 Aligned_cols=104 Identities=14% Similarity=0.202 Sum_probs=76.1
Q ss_pred CCCCCC-EEEEEecCCCccHHHHHhhhCCCcEEEEEeCChHHHHHHHHHH-HcCCCeEEEEccCCCCcccccCCCcEeEE
Q 021911 140 WIKPGA-RVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMA-KKRTNVIPIIEDARHPAKYRMLVGMVDVI 217 (305)
Q Consensus 140 ~~~~g~-~VLDlG~G~G~~t~~la~~~~~~~~V~avD~s~~~~~~l~~~a-~~~~nI~~~~~D~~~~~~~~~~~~~fD~V 217 (305)
.+++-. ++|-+|||.--++.++-+- ..-.|+.+|+|+..+..++... +.++-+.+...|+.... +.+++||+|
T Consensus 44 ~~~p~~~~~l~lGCGNS~l~e~ly~~--G~~dI~~iD~S~V~V~~m~~~~~~~~~~~~~~~~d~~~l~---fedESFdiV 118 (482)
T KOG2352|consen 44 YLSPSDFKILQLGCGNSELSEHLYKN--GFEDITNIDSSSVVVAAMQVRNAKERPEMQMVEMDMDQLV---FEDESFDIV 118 (482)
T ss_pred hhchhhceeEeecCCCCHHHHHHHhc--CCCCceeccccHHHHHHHHhccccCCcceEEEEecchhcc---CCCcceeEE
Confidence 345555 9999999998888777765 2347999999998888887666 44477889999987765 336789988
Q ss_pred EE----eCC-----C---hhHHHHHHHHHhccCCCCcEEEEEE
Q 021911 218 FS----DVA-----Q---PDQARILALNASYFLKAGGHFVISI 248 (305)
Q Consensus 218 ~~----d~~-----~---~~~~~~l~~~a~~~LkpGG~lv~s~ 248 (305)
+. |.. . +........+++++|+++|+++..+
T Consensus 119 IdkGtlDal~~de~a~~~~~~v~~~~~eVsrvl~~~gk~~svt 161 (482)
T KOG2352|consen 119 IDKGTLDALFEDEDALLNTAHVSNMLDEVSRVLAPGGKYISVT 161 (482)
T ss_pred EecCccccccCCchhhhhhHHhhHHHhhHHHHhccCCEEEEEE
Confidence 86 222 1 1233333347999999999988877
|
|
| >PRK10458 DNA cytosine methylase; Provisional | Back alignment and domain information |
|---|
Probab=97.08 E-value=0.022 Score=55.61 Aligned_cols=150 Identities=17% Similarity=0.149 Sum_probs=89.3
Q ss_pred CCEEEEEecCCCccHHHHHhhhCCCcEEEEEeCChHHHHHHHHHHHcCCCeEEEEccCCCCcccc--------------c
Q 021911 144 GARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKRTNVIPIIEDARHPAKYR--------------M 209 (305)
Q Consensus 144 g~~VLDlG~G~G~~t~~la~~~~~~~~V~avD~s~~~~~~l~~~a~~~~nI~~~~~D~~~~~~~~--------------~ 209 (305)
..+++||+||.|.+..-+-.. + --.|.++|+++.+.+....+....++...+..|++...... .
T Consensus 88 ~~~~iDLFsGiGGl~lGfe~a-G-~~~v~a~Eid~~A~~TY~~N~~~~p~~~~~~~DI~~i~~~~~~~~~~~~~~~~~~~ 165 (467)
T PRK10458 88 AFRFIDLFAGIGGIRRGFEAI-G-GQCVFTSEWNKHAVRTYKANWYCDPATHRFNEDIRDITLSHKEGVSDEEAAEHIRQ 165 (467)
T ss_pred CceEEEeCcCccHHHHHHHHc-C-CEEEEEEechHHHHHHHHHHcCCCCccceeccChhhCccccccccchhhhhhhhhc
Confidence 569999999999999888654 3 23688999999554443333211134455667776653210 0
Q ss_pred CCCcEeEEEEeCCChh----------------------HHHHHHHH---HhccCCCCcEEEEEEcccccCCCCchhhhHH
Q 021911 210 LVGMVDVIFSDVAQPD----------------------QARILALN---ASYFLKAGGHFVISIKANCIDSTVPAEAVFQ 264 (305)
Q Consensus 210 ~~~~fD~V~~d~~~~~----------------------~~~~l~~~---a~~~LkpGG~lv~s~~~~~i~~~~~~~~v~~ 264 (305)
....+|+++..+||.. +..++. + +...++|. .|++.-. .-+.+. +....|.
T Consensus 166 ~~p~~DvL~gGpPCQ~FS~AG~~k~~~~gr~~g~~~d~rg~Lf~-~~~rii~~~kPk-~fvlENV-~gl~s~-~~g~~f~ 241 (467)
T PRK10458 166 HIPDHDVLLAGFPCQPFSLAGVSKKNSLGRAHGFECETQGTLFF-DVARIIDAKRPA-IFVLENV-KNLKSH-DKGKTFR 241 (467)
T ss_pred cCCCCCEEEEcCCCCccchhcccccccccccccccCCccccHHH-HHHHHHHHhCCC-EEEEeCc-Hhhhcc-cccHHHH
Confidence 1236899999888531 111222 3 33346776 4444321 112111 2233566
Q ss_pred HHHHHHHHCCCcEeE-------------EeecCCCCCceEEEEEEEcC
Q 021911 265 SEVKKLQQDQFKPFE-------------QVTLEPFERDHACVVGGYRM 299 (305)
Q Consensus 265 ~~~~~l~~~Gf~~~e-------------~~~l~p~~~~~~~vv~~~~~ 299 (305)
..++.|++.||.+.+ ..++-|..|..+++||.++.
T Consensus 242 ~i~~~L~~lGY~v~~~~~~g~~~~~vlna~~fVPQ~R~RvfiVg~r~~ 289 (467)
T PRK10458 242 IIMQTLDELGYDVADAEDNGPDDPKIIDGKHFLPQHRERIVLVGFRRD 289 (467)
T ss_pred HHHHHHHHcCCeEEeccccCcccceEeehhhCCCccCcEEEEEEEeCC
Confidence 667888889999753 11336889999999998754
|
|
| >COG2384 Predicted SAM-dependent methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.06 E-value=0.024 Score=49.51 Aligned_cols=143 Identities=17% Similarity=0.116 Sum_probs=99.5
Q ss_pred CCCCEEEEEecCCCccHHHHHhhhCCCcEEEEEeCChHHHHHHHHHHHcC---CCeEEEEccCCCCcccccCCCcEeEEE
Q 021911 142 KPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKR---TNVIPIIEDARHPAKYRMLVGMVDVIF 218 (305)
Q Consensus 142 ~~g~~VLDlG~G~G~~t~~la~~~~~~~~V~avD~s~~~~~~l~~~a~~~---~nI~~~~~D~~~~~~~~~~~~~fD~V~ 218 (305)
+.+..+.|+||=.+.+...+... ++...++++|+++..+...+++.++. +.|...+.|...... +.+.+|+|+
T Consensus 15 ~~~~~iaDIGsDHAYLp~~Lv~~-~~~~~~va~eV~~gpl~~a~~~v~~~~l~~~i~vr~~dgl~~l~---~~d~~d~iv 90 (226)
T COG2384 15 KQGARIADIGSDHAYLPIYLVKN-NPASTAVAGEVVPGPLESAIRNVKKNNLSERIDVRLGDGLAVLE---LEDEIDVIV 90 (226)
T ss_pred HcCCceeeccCchhHhHHHHHhc-CCcceEEEeecccCHHHHHHHHHHhcCCcceEEEeccCCccccC---ccCCcCEEE
Confidence 45566999999999999999987 35668999999997777777777766 456666667644332 234788775
Q ss_pred -EeCCChhHHHHHHHHHhccCCCCcEEEEEEcccccCCCCchhhhHHHHHHHHHHCCCcEeEEeecCCCCCceEEEEEEE
Q 021911 219 -SDVAQPDQARILALNASYFLKAGGHFVISIKANCIDSTVPAEAVFQSEVKKLQQDQFKPFEQVTLEPFERDHACVVGGY 297 (305)
Q Consensus 219 -~d~~~~~~~~~l~~~a~~~LkpGG~lv~s~~~~~i~~~~~~~~v~~~~~~~l~~~Gf~~~e~~~l~p~~~~~~~vv~~~ 297 (305)
+-|--..-.+++. +....|+.==+|++.- + ..+ ....++|.+++|.+....-++.-.+=|-++++.+
T Consensus 91 IAGMGG~lI~~ILe-e~~~~l~~~~rlILQP--n-----~~~----~~LR~~L~~~~~~I~~E~ileE~~kiYEIlv~e~ 158 (226)
T COG2384 91 IAGMGGTLIREILE-EGKEKLKGVERLILQP--N-----IHT----YELREWLSANSYEIKAETILEEDGKIYEILVVEK 158 (226)
T ss_pred EeCCcHHHHHHHHH-HhhhhhcCcceEEECC--C-----CCH----HHHHHHHHhCCceeeeeeeecccCeEEEEEEEec
Confidence 5666777888888 7777777544566542 1 111 2235788899999887665666556677777766
Q ss_pred cCC
Q 021911 298 RMP 300 (305)
Q Consensus 298 ~~~ 300 (305)
..+
T Consensus 159 ~~~ 161 (226)
T COG2384 159 SSK 161 (226)
T ss_pred CCc
Confidence 653
|
|
| >KOG3178 consensus Hydroxyindole-O-methyltransferase and related SAM-dependent methyltransferases [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.02 E-value=0.0032 Score=58.39 Aligned_cols=93 Identities=17% Similarity=0.201 Sum_probs=70.4
Q ss_pred CCEEEEEecCCCccHHHHHhhhCCCcEEEEEeCChHHHHHHHHHHHcCCCeEEEEccCCCCcccccCCCcEeEEEE----
Q 021911 144 GARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKRTNVIPIIEDARHPAKYRMLVGMVDVIFS---- 219 (305)
Q Consensus 144 g~~VLDlG~G~G~~t~~la~~~~~~~~V~avD~s~~~~~~l~~~a~~~~nI~~~~~D~~~~~~~~~~~~~fD~V~~---- 219 (305)
-...+|+|.|.|..+.++...+ | .|-+++++...+........ +.|+.+-+|..... +.-|+|++
T Consensus 178 v~~avDvGgGiG~v~k~ll~~f-p--~ik~infdlp~v~~~a~~~~--~gV~~v~gdmfq~~------P~~daI~mkWiL 246 (342)
T KOG3178|consen 178 VNVAVDVGGGIGRVLKNLLSKY-P--HIKGINFDLPFVLAAAPYLA--PGVEHVAGDMFQDT------PKGDAIWMKWIL 246 (342)
T ss_pred CceEEEcCCcHhHHHHHHHHhC-C--CCceeecCHHHHHhhhhhhc--CCcceecccccccC------CCcCeEEEEeec
Confidence 3789999999999999999965 3 58888888754333333332 56888888886542 35578886
Q ss_pred -eCCChhHHHHHHHHHhccCCCCcEEEEEE
Q 021911 220 -DVAQPDQARILALNASYFLKAGGHFVISI 248 (305)
Q Consensus 220 -d~~~~~~~~~l~~~a~~~LkpGG~lv~s~ 248 (305)
|.+..+-..+|. +++..|+|+|.+++..
T Consensus 247 hdwtDedcvkiLk-nC~~sL~~~GkIiv~E 275 (342)
T KOG3178|consen 247 HDWTDEDCVKILK-NCKKSLPPGGKIIVVE 275 (342)
T ss_pred ccCChHHHHHHHH-HHHHhCCCCCEEEEEe
Confidence 444567778888 9999999999999986
|
|
| >KOG1709 consensus Guanidinoacetate methyltransferase and related proteins [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.02 E-value=0.0064 Score=52.80 Aligned_cols=114 Identities=20% Similarity=0.229 Sum_probs=76.2
Q ss_pred chhhHHHHHHHccccccCCCCCCEEEEEecCCCccHHHHHhhhCCCcEEEEEeCChHHHHHHHHHHHc-CCCeEEEEccC
Q 021911 123 PFRSKLAAAVLGGVDNIWIKPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKK-RTNVIPIIEDA 201 (305)
Q Consensus 123 ~~~s~l~a~ll~~l~~~~~~~g~~VLDlG~G~G~~t~~la~~~~~~~~V~avD~s~~~~~~l~~~a~~-~~nI~~~~~D~ 201 (305)
|+...+++.+. ..+.+||.+|-|-|.....+.+. .| ..=+-+|..|...+.|.+..-. +.||.+...-.
T Consensus 89 piMha~A~ai~--------tkggrvLnVGFGMgIidT~iQe~-~p-~~H~IiE~hp~V~krmr~~gw~ek~nViil~g~W 158 (271)
T KOG1709|consen 89 PIMHALAEAIS--------TKGGRVLNVGFGMGIIDTFIQEA-PP-DEHWIIEAHPDVLKRMRDWGWREKENVIILEGRW 158 (271)
T ss_pred HHHHHHHHHHh--------hCCceEEEeccchHHHHHHHhhc-CC-cceEEEecCHHHHHHHHhcccccccceEEEecch
Confidence 44545555443 57899999999999888888776 23 3456689999555555444322 26888776644
Q ss_pred CCCcccccCCCcEeEEEEeCCC---hhHHHHHHHHHhccCCCCcEEEEEE
Q 021911 202 RHPAKYRMLVGMVDVIFSDVAQ---PDQARILALNASYFLKAGGHFVISI 248 (305)
Q Consensus 202 ~~~~~~~~~~~~fD~V~~d~~~---~~~~~~l~~~a~~~LkpGG~lv~s~ 248 (305)
.+..+. .++..||-|+-|.-. .+...... ++.++|||+|.|-+.-
T Consensus 159 eDvl~~-L~d~~FDGI~yDTy~e~yEdl~~~hq-h~~rLLkP~gv~SyfN 206 (271)
T KOG1709|consen 159 EDVLNT-LPDKHFDGIYYDTYSELYEDLRHFHQ-HVVRLLKPEGVFSYFN 206 (271)
T ss_pred Hhhhcc-ccccCcceeEeechhhHHHHHHHHHH-HHhhhcCCCceEEEec
Confidence 333221 235689999987763 34444444 8999999999988763
|
|
| >COG1064 AdhP Zn-dependent alcohol dehydrogenases [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.01 E-value=0.0035 Score=58.43 Aligned_cols=100 Identities=24% Similarity=0.313 Sum_probs=65.9
Q ss_pred cccccCCCCCCEEEEEecC-CCccHHHHHhhhCCCcEEEEEeCChHHHHHHHHHHHcCCCeEEEEc-cCCCCcccccCCC
Q 021911 135 GVDNIWIKPGARVLYLGAA-SGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKRTNVIPIIE-DARHPAKYRMLVG 212 (305)
Q Consensus 135 ~l~~~~~~~g~~VLDlG~G-~G~~t~~la~~~~~~~~V~avD~s~~~~~~l~~~a~~~~nI~~~~~-D~~~~~~~~~~~~ 212 (305)
.|.....+|+++|+-+|+| -|..+..+|..++ .+|+++|.|+ +-++.+++----.++.. |...... ...
T Consensus 158 alk~~~~~pG~~V~I~G~GGlGh~avQ~Aka~g--a~Via~~~~~----~K~e~a~~lGAd~~i~~~~~~~~~~---~~~ 228 (339)
T COG1064 158 ALKKANVKPGKWVAVVGAGGLGHMAVQYAKAMG--AEVIAITRSE----EKLELAKKLGADHVINSSDSDALEA---VKE 228 (339)
T ss_pred ehhhcCCCCCCEEEEECCcHHHHHHHHHHHHcC--CeEEEEeCCh----HHHHHHHHhCCcEEEEcCCchhhHH---hHh
Confidence 3445578999999999887 4457778888765 7999999999 44455554322223322 2211111 123
Q ss_pred cEeEEEEeCCChhHHHHHHHHHhccCCCCcEEEEEE
Q 021911 213 MVDVIFSDVAQPDQARILALNASYFLKAGGHFVISI 248 (305)
Q Consensus 213 ~fD~V~~d~~~~~~~~~l~~~a~~~LkpGG~lv~s~ 248 (305)
.||+|+..++ +... . .+.+.|+++|++++.=
T Consensus 229 ~~d~ii~tv~-~~~~---~-~~l~~l~~~G~~v~vG 259 (339)
T COG1064 229 IADAIIDTVG-PATL---E-PSLKALRRGGTLVLVG 259 (339)
T ss_pred hCcEEEECCC-hhhH---H-HHHHHHhcCCEEEEEC
Confidence 4999998888 3333 2 5558999999999874
|
|
| >COG0270 Dcm Site-specific DNA methylase [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=96.95 E-value=0.011 Score=55.18 Aligned_cols=144 Identities=19% Similarity=0.143 Sum_probs=89.0
Q ss_pred CCEEEEEecCCCccHHHHHhhhCCCcEEEEEeCChHHHHHHHHHHHcC-CCeEEEEccCCCCcccccCCCcEeEEEEeCC
Q 021911 144 GARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKR-TNVIPIIEDARHPAKYRMLVGMVDVIFSDVA 222 (305)
Q Consensus 144 g~~VLDlG~G~G~~t~~la~~~~~~~~V~avD~s~~~~~~l~~~a~~~-~nI~~~~~D~~~~~~~~~~~~~fD~V~~d~~ 222 (305)
..+++||+||.|.+..-+... + --.+.++|+++ ..++..+.+ +.-.++..|+............+|+|+.-+|
T Consensus 3 ~~~~idLFsG~GG~~lGf~~a-g-f~~~~a~Eid~----~a~~ty~~n~~~~~~~~~di~~~~~~~~~~~~~DvligGpP 76 (328)
T COG0270 3 KMKVIDLFAGIGGLSLGFEEA-G-FEIVFANEIDP----PAVATYKANFPHGDIILGDIKELDGEALRKSDVDVLIGGPP 76 (328)
T ss_pred CceEEeeccCCchHHHHHHhc-C-CeEEEEEecCH----HHHHHHHHhCCCCceeechHhhcChhhccccCCCEEEeCCC
Confidence 368999999999999777765 2 33688999999 444444443 3356677887766543211128999999999
Q ss_pred Chh------------HH----HHHHHHHhccCCCCcEEEEEEcccccCCCCchhhhHHHHHHHHHHCCCcEeE-Eee---
Q 021911 223 QPD------------QA----RILALNASYFLKAGGHFVISIKANCIDSTVPAEAVFQSEVKKLQQDQFKPFE-QVT--- 282 (305)
Q Consensus 223 ~~~------------~~----~~l~~~a~~~LkpGG~lv~s~~~~~i~~~~~~~~v~~~~~~~l~~~Gf~~~e-~~~--- 282 (305)
|.+ .. --+. ++...++| -.|++.-. .-+.+. ....+....+.|++.||.+.. ++.
T Consensus 77 CQ~FS~aG~r~~~~D~R~~L~~~~~-r~I~~~~P-~~fv~ENV-~gl~~~--~~~~~~~i~~~L~~~GY~~~~~ilna~d 151 (328)
T COG0270 77 CQDFSIAGKRRGYDDPRGSLFLEFI-RLIEQLRP-KFFVLENV-KGLLSS--KGQTFDEIKKELEELGYGVEFNILNAAD 151 (328)
T ss_pred CcchhhcCcccCCcCccceeeHHHH-HHHHhhCC-CEEEEecC-chHHhc--CchHHHHHHHHHHHcCCcchHheeeHHh
Confidence 642 11 1112 34456788 24444321 111121 223556667888999997433 222
Q ss_pred -cCCCCCceEEEEEEEc
Q 021911 283 -LEPFERDHACVVGGYR 298 (305)
Q Consensus 283 -l~p~~~~~~~vv~~~~ 298 (305)
--|..|...++||..+
T Consensus 152 yGvPQ~ReRvfiig~~~ 168 (328)
T COG0270 152 YGVPQSRERVFIVGFRR 168 (328)
T ss_pred cCCCCCccEEEEEEecC
Confidence 3577899999998664
|
|
| >PTZ00146 fibrillarin; Provisional | Back alignment and domain information |
|---|
Probab=96.88 E-value=0.0023 Score=58.57 Aligned_cols=11 Identities=27% Similarity=-0.043 Sum_probs=5.2
Q ss_pred ccCCCCcEEEE
Q 021911 236 YFLKAGGHFVI 246 (305)
Q Consensus 236 ~~LkpGG~lv~ 246 (305)
+.|+..|+-.+
T Consensus 257 ~~L~~~GF~~~ 267 (293)
T PTZ00146 257 QKLKKEGLKPK 267 (293)
T ss_pred HHHHHcCCceE
Confidence 45555554433
|
|
| >KOG3115 consensus Methyltransferase-like protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.86 E-value=0.0095 Score=51.30 Aligned_cols=103 Identities=14% Similarity=0.254 Sum_probs=65.9
Q ss_pred CCEEEEEecCCCccHHHHHhhhCCCcEEEEEeCChH---HHHHHHHHHHcC------CCeEEEEccCCCCcccccCCCcE
Q 021911 144 GARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHR---SGRDLVNMAKKR------TNVIPIIEDARHPAKYRMLVGMV 214 (305)
Q Consensus 144 g~~VLDlG~G~G~~t~~la~~~~~~~~V~avD~s~~---~~~~l~~~a~~~------~nI~~~~~D~~~~~~~~~~~~~f 214 (305)
.-.+.|||||-|.+...|+..+ |+..+++.||-.. .+.+-++.+... +||.....++....+.-+...+.
T Consensus 61 kvefaDIGCGyGGLlv~Lsp~f-PdtLiLGmEIR~KVsdYVk~RI~ALR~~~a~~~~~ni~vlr~namk~lpn~f~kgqL 139 (249)
T KOG3115|consen 61 KVEFADIGCGYGGLLMKLAPKF-PDTLILGMEIRDKVSDYVKERIQALRRTSAEGQYPNISVLRTNAMKFLPNFFEKGQL 139 (249)
T ss_pred cceEEeeccCccchhhhccccC-ccceeeeehhhHHHHHHHHHHHHHHhccccccccccceeeeccchhhccchhhhccc
Confidence 3578999999999999999987 6778999998532 233333333322 56766666654433221222344
Q ss_pred eEEEEeCCCh-----------hHHHHHHHHHhccCCCCcEEEEEE
Q 021911 215 DVIFSDVAQP-----------DQARILALNASYFLKAGGHFVISI 248 (305)
Q Consensus 215 D~V~~d~~~~-----------~~~~~l~~~a~~~LkpGG~lv~s~ 248 (305)
+-++...|.| ....++. +...+|+++|.++..|
T Consensus 140 skmff~fpdpHfk~~khk~rii~~~l~~-eyay~l~~gg~~ytit 183 (249)
T KOG3115|consen 140 SKMFFLFPDPHFKARKHKWRIITSTLLS-EYAYVLREGGILYTIT 183 (249)
T ss_pred ccceeecCChhHhhhhccceeechhHHH-HHHhhhhcCceEEEEe
Confidence 4444444422 2334444 7788999999999988
|
|
| >KOG0822 consensus Protein kinase inhibitor [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=96.79 E-value=0.005 Score=59.86 Aligned_cols=119 Identities=24% Similarity=0.211 Sum_probs=77.1
Q ss_pred hhHHHHHHHccccccCCCCCCEEEEEecCCCccHHHHH---hhhCCCcEEEEEeCChHHHHHHHHHHHcC--CCeEEEEc
Q 021911 125 RSKLAAAVLGGVDNIWIKPGARVLYLGAASGTTVSHVS---DIVGPNGVVYAVEFSHRSGRDLVNMAKKR--TNVIPIIE 199 (305)
Q Consensus 125 ~s~l~a~ll~~l~~~~~~~g~~VLDlG~G~G~~t~~la---~~~~~~~~V~avD~s~~~~~~l~~~a~~~--~nI~~~~~ 199 (305)
.+.+..++++....-..+.-..|+-+|+|-|-++.... +....+-++|+||-+|.++..+..+..+. ..|+++..
T Consensus 349 q~Ai~~AL~Drvpd~~a~~~tVimvlGaGRGPLv~~~lkaa~~~~RkVklyavEKNPNAivtL~~~n~~~W~~~Vtii~~ 428 (649)
T KOG0822|consen 349 QQAILKALLDRVPDESAKTTTVIMVLGAGRGPLVDASLKAAEETDRKVKLYAVEKNPNAIVTLQNRNFECWDNRVTIISS 428 (649)
T ss_pred HHHHHHHHHhhCcccccCceEEEEEecCCCccHHHHHHHHHHHhcCceEEEEEecCcchhhhhhhhchhhhcCeeEEEec
Confidence 55555556543221111122457778999998765544 33445668999999998877766543332 67999999
Q ss_pred cCCCCcccccCCCcEeEEEEeCC-----ChhHHHHHHHHHhccCCCCcEEEEE
Q 021911 200 DARHPAKYRMLVGMVDVIFSDVA-----QPDQARILALNASYFLKAGGHFVIS 247 (305)
Q Consensus 200 D~~~~~~~~~~~~~fD~V~~d~~-----~~~~~~~l~~~a~~~LkpGG~lv~s 247 (305)
|++.+... ..+.|++++... ...-.+.|. -+.++|||.|..+=+
T Consensus 429 DMR~w~ap---~eq~DI~VSELLGSFGDNELSPECLD-G~q~fLkpdgIsIP~ 477 (649)
T KOG0822|consen 429 DMRKWNAP---REQADIIVSELLGSFGDNELSPECLD-GAQKFLKPDGISIPS 477 (649)
T ss_pred cccccCCc---hhhccchHHHhhccccCccCCHHHHH-HHHhhcCCCceEccc
Confidence 99998631 368999987544 223344555 677999999765543
|
|
| >KOG3201 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=96.74 E-value=0.0026 Score=52.82 Aligned_cols=124 Identities=18% Similarity=0.182 Sum_probs=73.1
Q ss_pred eecCchhhHHHHHHHccccccCCCCCCEEEEEecCC-CccHHHHHhhhCCCcEEEEEeCChHHHHHHHHHHHcC-----C
Q 021911 119 RIWNPFRSKLAAAVLGGVDNIWIKPGARVLYLGAAS-GTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKR-----T 192 (305)
Q Consensus 119 ~~~~~~~s~l~a~ll~~l~~~~~~~g~~VLDlG~G~-G~~t~~la~~~~~~~~V~avD~s~~~~~~l~~~a~~~-----~ 192 (305)
.+| |....|+..+|.- .+.-.+.+||++|.|- |..++.+|... +...|.-.|-++.+++.+.+....+ +
T Consensus 9 ciw-pseeala~~~l~~---~n~~rg~~ilelgggft~laglmia~~a-~~~~v~ltdgne~svrnv~ki~~~n~~s~~t 83 (201)
T KOG3201|consen 9 CIW-PSEEALAWTILRD---PNKIRGRRILELGGGFTGLAGLMIACKA-PDSSVWLTDGNEESVRNVEKIRNSNMASSLT 83 (201)
T ss_pred Eec-ccHHHHHHHHHhc---hhHHhHHHHHHhcCchhhhhhhheeeec-CCceEEEecCCHHHHHHHHHHHhcccccccc
Confidence 455 3345666667631 1233468999999984 44445555544 5678998999987777766554433 1
Q ss_pred CeEEEEccCCCCcccccCCCcEeEEEEeC-C-ChhHHHHHHHHHhccCCCCcEEEEEE
Q 021911 193 NVIPIIEDARHPAKYRMLVGMVDVIFSDV-A-QPDQARILALNASYFLKAGGHFVISI 248 (305)
Q Consensus 193 nI~~~~~D~~~~~~~~~~~~~fD~V~~d~-~-~~~~~~~l~~~a~~~LkpGG~lv~s~ 248 (305)
.......+....... .....||.|++.- . ..+..+.|...++++|+|-|.-+++.
T Consensus 84 sc~vlrw~~~~aqsq-~eq~tFDiIlaADClFfdE~h~sLvdtIk~lL~p~g~Al~fs 140 (201)
T KOG3201|consen 84 SCCVLRWLIWGAQSQ-QEQHTFDIILAADCLFFDEHHESLVDTIKSLLRPSGRALLFS 140 (201)
T ss_pred eehhhHHHHhhhHHH-HhhCcccEEEeccchhHHHHHHHHHHHHHHHhCcccceeEec
Confidence 121111222111111 1235899999733 3 33344455558999999999877765
|
|
| >PF10354 DUF2431: Domain of unknown function (DUF2431); InterPro: IPR019446 This entry represents the N-terminal domain of a family of proteins whose function is not known | Back alignment and domain information |
|---|
Probab=96.70 E-value=0.044 Score=46.10 Aligned_cols=126 Identities=13% Similarity=0.122 Sum_probs=73.4
Q ss_pred ecCCCccHHHHHhhhCCCcEEEEEeCChHH--H------HHHHHHHHcCCCeE-EEEccCCCCcccc-cCCCcEeEEEEe
Q 021911 151 GAASGTTVSHVSDIVGPNGVVYAVEFSHRS--G------RDLVNMAKKRTNVI-PIIEDARHPAKYR-MLVGMVDVIFSD 220 (305)
Q Consensus 151 G~G~G~~t~~la~~~~~~~~V~avD~s~~~--~------~~l~~~a~~~~nI~-~~~~D~~~~~~~~-~~~~~fD~V~~d 220 (305)
|=|.=.++..|+........|+|.-+.... . ...++..++ .++. ..-.|++.+.... .....||.|+-|
T Consensus 4 GeGdfSFs~sL~~~~~~~~~l~ATs~ds~~~l~~kY~~~~~nl~~L~~-~g~~V~~~VDat~l~~~~~~~~~~FDrIiFN 82 (166)
T PF10354_consen 4 GEGDFSFSLSLARAFGSATNLVATSYDSEEELLQKYPDAEENLEELRE-LGVTVLHGVDATKLHKHFRLKNQRFDRIIFN 82 (166)
T ss_pred eccchHHHHHHHHHcCCCCeEEEeecCchHHHHHhcccHHHHHHHHhh-cCCccccCCCCCcccccccccCCcCCEEEEe
Confidence 334444666777776545577777554211 1 122222222 3333 3456888776542 134689999999
Q ss_pred CCChh----------------HHHHHHHHHhccCCCCcEEEEEEcccccCCCCchhhhHHHHHHHHHHCCCcEeEEeecC
Q 021911 221 VAQPD----------------QARILALNASYFLKAGGHFVISIKANCIDSTVPAEAVFQSEVKKLQQDQFKPFEQVTLE 284 (305)
Q Consensus 221 ~~~~~----------------~~~~l~~~a~~~LkpGG~lv~s~~~~~i~~~~~~~~v~~~~~~~l~~~Gf~~~e~~~l~ 284 (305)
.|+.- ....+. +|.++|+++|.+.++.+... .-+.+.+ .+..++.||.+.+...++
T Consensus 83 FPH~G~~~~~~~~~i~~nr~Ll~~Ff~-Sa~~~L~~~G~IhVTl~~~~---py~~W~i----~~lA~~~gl~l~~~~~F~ 154 (166)
T PF10354_consen 83 FPHVGGGSEDGKRNIRLNRELLRGFFK-SASQLLKPDGEIHVTLKDGQ---PYDSWNI----EELAAEAGLVLVRKVPFD 154 (166)
T ss_pred CCCCCCCccchhHHHHHHHHHHHHHHH-HHHHhcCCCCEEEEEeCCCC---CCccccH----HHHHHhcCCEEEEEecCC
Confidence 99432 122333 79999999999999983221 1122222 233367899999888665
Q ss_pred C
Q 021911 285 P 285 (305)
Q Consensus 285 p 285 (305)
+
T Consensus 155 ~ 155 (166)
T PF10354_consen 155 P 155 (166)
T ss_pred H
Confidence 4
|
|
| >PF03141 Methyltransf_29: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR004159 Members of this family of hypothetical plant proteins are putative methyltransferases | Back alignment and domain information |
|---|
Probab=96.64 E-value=0.0062 Score=59.06 Aligned_cols=131 Identities=18% Similarity=0.213 Sum_probs=77.4
Q ss_pred CEEEEEecCCCccHHHHHhhhCCCcEEEEEeCChHHHHHHHHHHHcCCCeEEEEccCCC-CcccccCCCcEeEEEEeCCC
Q 021911 145 ARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKRTNVIPIIEDARH-PAKYRMLVGMVDVIFSDVAQ 223 (305)
Q Consensus 145 ~~VLDlG~G~G~~t~~la~~~~~~~~V~avD~s~~~~~~l~~~a~~~~nI~~~~~D~~~-~~~~~~~~~~fD~V~~d~~~ 223 (305)
..|+|+.++.|+|+..|.+. + |..+-+.+....+.+...-.|- +.-+..|..+ ++.| +.+||+|.++-..
T Consensus 367 RNVMDMnAg~GGFAAAL~~~--~---VWVMNVVP~~~~ntL~vIydRG-LIG~yhDWCE~fsTY---PRTYDLlHA~~lf 437 (506)
T PF03141_consen 367 RNVMDMNAGYGGFAAALIDD--P---VWVMNVVPVSGPNTLPVIYDRG-LIGVYHDWCEAFSTY---PRTYDLLHADGLF 437 (506)
T ss_pred eeeeeecccccHHHHHhccC--C---ceEEEecccCCCCcchhhhhcc-cchhccchhhccCCC---Ccchhheehhhhh
Confidence 58999999999999999876 2 5555444422224444444442 3334456543 3444 5799999986551
Q ss_pred h------hHHHHHHHHHhccCCCCcEEEEEEcccccCCCCchhhhHHHHHHHHHHCCCcEeEEeecCC-CCCceEEEEEE
Q 021911 224 P------DQARILALNASYFLKAGGHFVISIKANCIDSTVPAEAVFQSEVKKLQQDQFKPFEQVTLEP-FERDHACVVGG 296 (305)
Q Consensus 224 ~------~~~~~l~~~a~~~LkpGG~lv~s~~~~~i~~~~~~~~v~~~~~~~l~~~Gf~~~e~~~l~p-~~~~~~~vv~~ 296 (305)
. +...+|. ++-+.|+|+|.+++-. ...+..+....++...|+..-. +.+. -....-+++++
T Consensus 438 s~~~~rC~~~~ill-EmDRILRP~G~~iiRD----------~~~vl~~v~~i~~~lrW~~~~~-d~e~g~~~~EkiL~~~ 505 (506)
T PF03141_consen 438 SLYKDRCEMEDILL-EMDRILRPGGWVIIRD----------TVDVLEKVKKIAKSLRWEVRIH-DTEDGPDGPEKILICQ 505 (506)
T ss_pred hhhcccccHHHHHH-HhHhhcCCCceEEEec----------cHHHHHHHHHHHHhCcceEEEE-ecCCCCCCCceEEEEE
Confidence 1 2445565 9999999999999975 1222222233345666766533 3322 11244455554
|
; GO: 0008168 methyltransferase activity |
| >PRK01747 mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltransferase/FAD-dependent cmnm(5)s(2)U34 oxidoreductase; Reviewed | Back alignment and domain information |
|---|
Probab=96.57 E-value=0.011 Score=60.40 Aligned_cols=122 Identities=15% Similarity=0.082 Sum_probs=78.0
Q ss_pred CCCCEEEEEecCCCccHHHHHhhh------CC-----CcEEEEEeCChHHHHHHHHHHH-------------cC------
Q 021911 142 KPGARVLYLGAASGTTVSHVSDIV------GP-----NGVVYAVEFSHRSGRDLVNMAK-------------KR------ 191 (305)
Q Consensus 142 ~~g~~VLDlG~G~G~~t~~la~~~------~~-----~~~V~avD~s~~~~~~l~~~a~-------------~~------ 191 (305)
++.-+|||+|-|+|...+.+.+.+ .+ .-+++++|..|-..+++.+..+ +.
T Consensus 56 ~~~~~i~e~gfG~G~N~l~~~~~~~~~~~~~~~~~~~~l~~~s~E~~p~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 135 (662)
T PRK01747 56 RRRFVIAETGFGTGLNFLATWQAFDQFRQRHPPARLKRLHFISFEKFPLTRADLARAHQHWPELAPLAEQLQAQWPLLLP 135 (662)
T ss_pred CCcEEEEecCcchHHHHHHHHHHHHHhhhhCCCCCCceEEEEEEECCCCCHHHHHHHHhhCcccHHHHHHHHHhCCccCC
Confidence 344799999999999888777665 12 3478899975422222222211 00
Q ss_pred ---------C--CeEEEEccCCCCcccccCCCcEeEEEEeCCCh------hHHHHHHHHHhccCCCCcEEEEEEcccccC
Q 021911 192 ---------T--NVIPIIEDARHPAKYRMLVGMVDVIFSDVAQP------DQARILALNASYFLKAGGHFVISIKANCID 254 (305)
Q Consensus 192 ---------~--nI~~~~~D~~~~~~~~~~~~~fD~V~~d~~~~------~~~~~l~~~a~~~LkpGG~lv~s~~~~~i~ 254 (305)
. +++++..|+.+.... +...||+|+.|.-.| +..+++. ++.++++|+++|+-.+.
T Consensus 136 g~~~~~~~~~~~~l~l~~gd~~~~~~~--~~~~~d~~~lD~FsP~~np~~W~~~~~~-~l~~~~~~~~~~~t~t~----- 207 (662)
T PRK01747 136 GCHRLLFDDGRVTLDLWFGDANELLPQ--LDARADAWFLDGFAPAKNPDMWSPNLFN-ALARLARPGATLATFTS----- 207 (662)
T ss_pred CceEEEecCCcEEEEEEecCHHHHHHh--ccccccEEEeCCCCCccChhhccHHHHH-HHHHHhCCCCEEEEeeh-----
Confidence 1 234556777654322 235699999997533 5777887 99999999999986551
Q ss_pred CCCchhhhHHHHHHHHHHCCCcEeE
Q 021911 255 STVPAEAVFQSEVKKLQQDQFKPFE 279 (305)
Q Consensus 255 ~~~~~~~v~~~~~~~l~~~Gf~~~e 279 (305)
.. .....|+++||++..
T Consensus 208 ----a~----~vr~~l~~~GF~v~~ 224 (662)
T PRK01747 208 ----AG----FVRRGLQEAGFTVRK 224 (662)
T ss_pred ----HH----HHHHHHHHcCCeeee
Confidence 11 124667788888764
|
|
| >KOG1269 consensus SAM-dependent methyltransferases [Lipid transport and metabolism; General function prediction only] | Back alignment and domain information |
|---|
Probab=96.52 E-value=0.0075 Score=56.99 Aligned_cols=103 Identities=20% Similarity=0.243 Sum_probs=72.9
Q ss_pred CCCCCCEEEEEecCCCccHHHHHhhhCCCcEEEEEeCChHHHHHHHHHHHcC---CCeEEEEccCCCCcccccCCCcEeE
Q 021911 140 WIKPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKR---TNVIPIIEDARHPAKYRMLVGMVDV 216 (305)
Q Consensus 140 ~~~~g~~VLDlG~G~G~~t~~la~~~~~~~~V~avD~s~~~~~~l~~~a~~~---~nI~~~~~D~~~~~~~~~~~~~fD~ 216 (305)
...|+..++|++|+-+..+..++.. ..+.++++|.++..+...-..+... ..-.++..|+-+.+.. +..||.
T Consensus 107 ~~~~~~~~~~~~~g~~~~~~~i~~f--~~~~~~Gl~~n~~e~~~~~~~~~~~~l~~k~~~~~~~~~~~~fe---dn~fd~ 181 (364)
T KOG1269|consen 107 SCFPGSKVLDVGTGVGGPSRYIAVF--KKAGVVGLDNNAYEAFRANELAKKAYLDNKCNFVVADFGKMPFE---DNTFDG 181 (364)
T ss_pred cCcccccccccCcCcCchhHHHHHh--ccCCccCCCcCHHHHHHHHHHHHHHHhhhhcceehhhhhcCCCC---ccccCc
Confidence 5678889999999999999999987 4568999999974332222111111 2222377787666533 578999
Q ss_pred EEE-eCC--ChhHHHHHHHHHhccCCCCcEEEEEE
Q 021911 217 IFS-DVA--QPDQARILALNASYFLKAGGHFVISI 248 (305)
Q Consensus 217 V~~-d~~--~~~~~~~l~~~a~~~LkpGG~lv~s~ 248 (305)
|.+ +.. .++....+. +++++|||||.++...
T Consensus 182 v~~ld~~~~~~~~~~~y~-Ei~rv~kpGG~~i~~e 215 (364)
T KOG1269|consen 182 VRFLEVVCHAPDLEKVYA-EIYRVLKPGGLFIVKE 215 (364)
T ss_pred EEEEeecccCCcHHHHHH-HHhcccCCCceEEeHH
Confidence 965 555 356666776 9999999999998864
|
|
| >PF05971 Methyltransf_10: Protein of unknown function (DUF890); InterPro: IPR010286 This family consists of several conserved hypothetical proteins from both eukaryotes and prokaryotes | Back alignment and domain information |
|---|
Probab=96.48 E-value=0.023 Score=52.21 Aligned_cols=79 Identities=8% Similarity=-0.017 Sum_probs=42.6
Q ss_pred CCEEEEEecCCCccHHHHHhhhCCCcEEEEEeCChHHHHHHHHHHHcC----CCeEEEEccCCC-C-cccccCCCcEeEE
Q 021911 144 GARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKR----TNVIPIIEDARH-P-AKYRMLVGMVDVI 217 (305)
Q Consensus 144 g~~VLDlG~G~G~~t~~la~~~~~~~~V~avD~s~~~~~~l~~~a~~~----~nI~~~~~D~~~-~-~~~~~~~~~fD~V 217 (305)
.-++||||+|.-..--.|+... ...+++|.|+++.+++.+.++.+.+ .+|.++...-.. . .......+.||+.
T Consensus 103 ~v~glDIGTGAscIYpLLg~~~-~~W~fvaTdID~~sl~~A~~nv~~N~~L~~~I~l~~~~~~~~i~~~i~~~~e~~dft 181 (299)
T PF05971_consen 103 KVRGLDIGTGASCIYPLLGAKL-YGWSFVATDIDPKSLESARENVERNPNLESRIELRKQKNPDNIFDGIIQPNERFDFT 181 (299)
T ss_dssp --EEEEES-TTTTHHHHHHHHH-H--EEEEEES-HHHHHHHHHHHHHT-T-TTTEEEEE--ST-SSTTTSTT--S-EEEE
T ss_pred ceEeecCCccHHHHHHHHhhhh-cCCeEEEecCCHHHHHHHHHHHHhccccccceEEEEcCCccccchhhhcccceeeEE
Confidence 5689999999876543444333 2579999999998887777776665 457777553211 1 1111123589999
Q ss_pred EEeCCC
Q 021911 218 FSDVAQ 223 (305)
Q Consensus 218 ~~d~~~ 223 (305)
+||+|.
T Consensus 182 mCNPPF 187 (299)
T PF05971_consen 182 MCNPPF 187 (299)
T ss_dssp EE----
T ss_pred ecCCcc
Confidence 999993
|
The function of members of this family are unknown but are predicted to be SAM-dependent methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 2H00_A. |
| >PF04445 SAM_MT: Putative SAM-dependent methyltransferase; InterPro: IPR007536 This family of proteins is functionally uncharacterised | Back alignment and domain information |
|---|
Probab=96.46 E-value=0.005 Score=54.47 Aligned_cols=81 Identities=25% Similarity=0.254 Sum_probs=46.8
Q ss_pred CCCCC--CEEEEEecCCCccHHHHHhhhCCCcEEEEEeCChHHH---HHHHHHHHcC--------CCeEEEEccCCCCcc
Q 021911 140 WIKPG--ARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSG---RDLVNMAKKR--------TNVIPIIEDARHPAK 206 (305)
Q Consensus 140 ~~~~g--~~VLDlG~G~G~~t~~la~~~~~~~~V~avD~s~~~~---~~l~~~a~~~--------~nI~~~~~D~~~~~~ 206 (305)
.++++ .+|||.-||-|.-+..+|.. + ++|+++|-||-.. .+-++.+... .+|++++.|..+...
T Consensus 70 Glk~~~~~~VLDaTaGLG~Da~vlA~~-G--~~V~~lErspvia~Ll~dGL~r~~~~~~~~~~~~~ri~l~~~d~~~~L~ 146 (234)
T PF04445_consen 70 GLKPGMRPSVLDATAGLGRDAFVLASL-G--CKVTGLERSPVIAALLKDGLKRAQQDPELLAEAMRRIQLIHGDALEYLR 146 (234)
T ss_dssp T-BTTB---EEETT-TTSHHHHHHHHH-T----EEEEE--HHHHHHHHHHHHHHHHSTTTHHHHHHHEEEEES-CCCHCC
T ss_pred CCCCCCCCEEEECCCcchHHHHHHHcc-C--CeEEEEECCHHHHHHHHHHHHHHHhCcHhHHHHHhCCEEEcCCHHHHHh
Confidence 45665 49999999999999999964 4 5899999997331 2223333322 368999999987654
Q ss_pred cccCCCcEeEEEEeCCChh
Q 021911 207 YRMLVGMVDVIFSDVAQPD 225 (305)
Q Consensus 207 ~~~~~~~fD~V~~d~~~~~ 225 (305)
....+||+|++|+..|.
T Consensus 147 --~~~~s~DVVY~DPMFp~ 163 (234)
T PF04445_consen 147 --QPDNSFDVVYFDPMFPE 163 (234)
T ss_dssp --CHSS--SEEEE--S---
T ss_pred --hcCCCCCEEEECCCCCC
Confidence 24679999999998553
|
; PDB: 2PGX_A 2OYR_A 2R6Z_A 2PKW_A. |
| >PF07091 FmrO: Ribosomal RNA methyltransferase (FmrO); PDB: 3LCU_A 3LCV_B 3FRH_A 3FRI_A 3B89_A 3FZG_A | Back alignment and domain information |
|---|
Probab=96.33 E-value=0.077 Score=47.36 Aligned_cols=132 Identities=14% Similarity=0.075 Sum_probs=70.4
Q ss_pred CCCCCCEEEEEecCCCccHHHHHhhhCCCcEEEEEeCChHHHHHHHHHHHcC-CCeEEEEccCCCCcccccCCCcEeEEE
Q 021911 140 WIKPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKR-TNVIPIIEDARHPAKYRMLVGMVDVIF 218 (305)
Q Consensus 140 ~~~~g~~VLDlG~G~G~~t~~la~~~~~~~~V~avD~s~~~~~~l~~~a~~~-~nI~~~~~D~~~~~~~~~~~~~fD~V~ 218 (305)
.+.+..+|||||||-=-++...... .+...++|+|++...++-+......- .+..+.+.|+..... ....|+.+
T Consensus 102 ~~~~p~sVlDigCGlNPlalp~~~~-~~~a~Y~a~DID~~~ve~l~~~l~~l~~~~~~~v~Dl~~~~~----~~~~DlaL 176 (251)
T PF07091_consen 102 RIPPPDSVLDIGCGLNPLALPWMPE-APGATYIAYDIDSQLVEFLNAFLAVLGVPHDARVRDLLSDPP----KEPADLAL 176 (251)
T ss_dssp CS---SEEEEET-TTCHHHHHTTTS-STT-EEEEEESBHHHHHHHHHHHHHTT-CEEEEEE-TTTSHT----TSEESEEE
T ss_pred cCCCCchhhhhhccCCceehhhccc-CCCcEEEEEeCCHHHHHHHHHHHHhhCCCcceeEeeeeccCC----CCCcchhh
Confidence 3455789999999886666655544 24569999999996655544443333 678888889866532 46789998
Q ss_pred EeCC--ChhHH-HHHHHHHhccCCCCcEEEEEEcccccCCC-CchhhhHHHHHHHH-HHCCCcE
Q 021911 219 SDVA--QPDQA-RILALNASYFLKAGGHFVISIKANCIDST-VPAEAVFQSEVKKL-QQDQFKP 277 (305)
Q Consensus 219 ~d~~--~~~~~-~~l~~~a~~~LkpGG~lv~s~~~~~i~~~-~~~~~v~~~~~~~l-~~~Gf~~ 277 (305)
+--. +-+|. +-...+..+.+... ++++|.+..++... .-.+.-...+++.+ ...++.+
T Consensus 177 llK~lp~le~q~~g~g~~ll~~~~~~-~~vVSfPtrSL~gR~~gm~~~y~~~fe~~~~~~~~~~ 239 (251)
T PF07091_consen 177 LLKTLPCLERQRRGAGLELLDALRSP-HVVVSFPTRSLGGRNKGMEQTYSAWFEALAAERGWIV 239 (251)
T ss_dssp EET-HHHHHHHSTTHHHHHHHHSCES-EEEEEEES-------TTHHHCHHHHHHHHCCTTCEEE
T ss_pred HHHHHHHHHHHhcchHHHHHHHhCCC-eEEEeccccccccCccccccCHHHHHHHhcccCCcee
Confidence 7443 33322 22212333445444 78888766665442 33333334444444 4556653
|
|
| >COG1568 Predicted methyltransferases [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.31 E-value=0.024 Score=51.09 Aligned_cols=103 Identities=19% Similarity=0.251 Sum_probs=65.8
Q ss_pred CCCEEEEEecCCCccHHHHHhhhCCCcEEEEEeCChHHHHHHHHHHHcC--CCeEEEEccCCCCcccccCCCcEeEEEEe
Q 021911 143 PGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKR--TNVIPIIEDARHPAKYRMLVGMVDVIFSD 220 (305)
Q Consensus 143 ~g~~VLDlG~G~G~~t~~la~~~~~~~~V~avD~s~~~~~~l~~~a~~~--~nI~~~~~D~~~~~~~~~~~~~fD~V~~d 220 (305)
.+..||-+| -.-.+++++| +.+-.-+|..||++++.+.-..+.+++. .||+.++.|++++.+.. +...||+.+.|
T Consensus 152 ~gK~I~vvG-DDDLtsia~a-Lt~mpk~iaVvDIDERli~fi~k~aee~g~~~ie~~~~Dlr~plpe~-~~~kFDvfiTD 228 (354)
T COG1568 152 EGKEIFVVG-DDDLTSIALA-LTGMPKRIAVVDIDERLIKFIEKVAEELGYNNIEAFVFDLRNPLPED-LKRKFDVFITD 228 (354)
T ss_pred CCCeEEEEc-CchhhHHHHH-hcCCCceEEEEechHHHHHHHHHHHHHhCccchhheeehhcccChHH-HHhhCCeeecC
Confidence 356798888 2223333333 3233347888999985444333444443 68999999999986652 45799999999
Q ss_pred CCChh-HHHHHHHHHhccCCCC---cEEEEEE
Q 021911 221 VAQPD-QARILALNASYFLKAG---GHFVISI 248 (305)
Q Consensus 221 ~~~~~-~~~~l~~~a~~~LkpG---G~lv~s~ 248 (305)
+|..- -.+++.-.-...||-- |++.++.
T Consensus 229 PpeTi~alk~FlgRGI~tLkg~~~aGyfgiT~ 260 (354)
T COG1568 229 PPETIKALKLFLGRGIATLKGEGCAGYFGITR 260 (354)
T ss_pred chhhHHHHHHHHhccHHHhcCCCccceEeeee
Confidence 99543 2233332455566665 7888886
|
|
| >KOG1331 consensus Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.25 E-value=0.0068 Score=54.75 Aligned_cols=95 Identities=18% Similarity=0.200 Sum_probs=68.4
Q ss_pred CCCCCEEEEEecCCCccHHHHHhhhCCCcEEEEEeCChHHHHHHHHHHHcCCCeEEEEccCCCCcccccCCCcEeEEEEe
Q 021911 141 IKPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKRTNVIPIIEDARHPAKYRMLVGMVDVIFSD 220 (305)
Q Consensus 141 ~~~g~~VLDlG~G~G~~t~~la~~~~~~~~V~avD~s~~~~~~l~~~a~~~~nI~~~~~D~~~~~~~~~~~~~fD~V~~d 220 (305)
...+..+||+|||.|-.+.. .|.+.+++.|++. .++..+++........+|+.+.+.. ..+||.+++-
T Consensus 43 ~~~gsv~~d~gCGngky~~~-----~p~~~~ig~D~c~----~l~~~ak~~~~~~~~~ad~l~~p~~---~~s~d~~lsi 110 (293)
T KOG1331|consen 43 QPTGSVGLDVGCGNGKYLGV-----NPLCLIIGCDLCT----GLLGGAKRSGGDNVCRADALKLPFR---EESFDAALSI 110 (293)
T ss_pred cCCcceeeecccCCcccCcC-----CCcceeeecchhh----hhccccccCCCceeehhhhhcCCCC---CCccccchhh
Confidence 34589999999999965433 2667899999998 7777776543226778898877632 5799998864
Q ss_pred CC-----C-hhHHHHHHHHHhccCCCCcEEEEEE
Q 021911 221 VA-----Q-PDQARILALNASYFLKAGGHFVISI 248 (305)
Q Consensus 221 ~~-----~-~~~~~~l~~~a~~~LkpGG~lv~s~ 248 (305)
.. . .....++. +..+.|+|||...+..
T Consensus 111 avihhlsT~~RR~~~l~-e~~r~lrpgg~~lvyv 143 (293)
T KOG1331|consen 111 AVIHHLSTRERRERALE-ELLRVLRPGGNALVYV 143 (293)
T ss_pred hhhhhhhhHHHHHHHHH-HHHHHhcCCCceEEEE
Confidence 43 2 23445555 8999999999876654
|
|
| >PF10237 N6-adenineMlase: Probable N6-adenine methyltransferase; InterPro: IPR019369 This family of proteins, which are of approximately 200 residues in length, contain a highly conserved Glu-Phe-Trp (QFW) motif close to the N terminus and an Asp/Asn-Pro-Pro-Tyr/Phe motif in the centre | Back alignment and domain information |
|---|
Probab=96.19 E-value=0.47 Score=39.75 Aligned_cols=109 Identities=19% Similarity=0.212 Sum_probs=67.4
Q ss_pred hhHHHHHHHccccccCCCCCCEEEEEecCCCccHHHHHhhhCCCcEEEEEeCChHHHHHHHHHHHcCCCeEEEEccCCCC
Q 021911 125 RSKLAAAVLGGVDNIWIKPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKRTNVIPIIEDARHP 204 (305)
Q Consensus 125 ~s~l~a~ll~~l~~~~~~~g~~VLDlG~G~G~~t~~la~~~~~~~~V~avD~s~~~~~~l~~~a~~~~nI~~~~~D~~~~ 204 (305)
...|+..+++ ...+..+|+=|||=+ .-.++.+...+..+++-+|++.+. .. -..+ .++.-|...+
T Consensus 12 ~~~l~~~l~~-----~~~~~~~iaclstPs--l~~~l~~~~~~~~~~~Lle~D~RF----~~---~~~~-~F~fyD~~~p 76 (162)
T PF10237_consen 12 AEFLARELLD-----GALDDTRIACLSTPS--LYEALKKESKPRIQSFLLEYDRRF----EQ---FGGD-EFVFYDYNEP 76 (162)
T ss_pred HHHHHHHHHH-----hcCCCCEEEEEeCcH--HHHHHHhhcCCCccEEEEeecchH----Hh---cCCc-ceEECCCCCh
Confidence 3445555543 234568898888733 333333322355689999999833 21 1124 6778888776
Q ss_pred cccc-cCCCcEeEEEEeCCC--hhHHHHHHHHHhccCCCCcEEEEEE
Q 021911 205 AKYR-MLVGMVDVIFSDVAQ--PDQARILALNASYFLKAGGHFVISI 248 (305)
Q Consensus 205 ~~~~-~~~~~fD~V~~d~~~--~~~~~~l~~~a~~~LkpGG~lv~s~ 248 (305)
.... .+..+||+|++|+|. .+-...+...+..++|+++.++++|
T Consensus 77 ~~~~~~l~~~~d~vv~DPPFl~~ec~~k~a~ti~~L~k~~~kii~~T 123 (162)
T PF10237_consen 77 EELPEELKGKFDVVVIDPPFLSEECLTKTAETIRLLLKPGGKIILCT 123 (162)
T ss_pred hhhhhhcCCCceEEEECCCCCCHHHHHHHHHHHHHHhCccceEEEec
Confidence 5431 234799999999994 3333344435666778989999987
|
This latter motif is characteristic of N-6 adenine-specific DNA methylases and could be involved in substrate binding or in the catalytic activity (, ). |
| >COG5459 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=96.07 E-value=0.0074 Score=56.02 Aligned_cols=99 Identities=24% Similarity=0.216 Sum_probs=60.6
Q ss_pred CEEEEEecCCCccHHHHHhhhCCCcEEEEEeCChHHHHHHHHHHHcCCCeEEEEccCCCCcc--cc---cCCCcEeEEEE
Q 021911 145 ARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKRTNVIPIIEDARHPAK--YR---MLVGMVDVIFS 219 (305)
Q Consensus 145 ~~VLDlG~G~G~~t~~la~~~~~~~~V~avD~s~~~~~~l~~~a~~~~nI~~~~~D~~~~~~--~~---~~~~~fD~V~~ 219 (305)
.+|||+|+|+|+-..++-+.+..--.++-+|.|+ ++++......+ ||.+...|.+..+- .+ .....|++|++
T Consensus 115 qsiLDvG~GPgtgl~A~n~i~Pdl~sa~ile~sp-~lrkV~~tl~~--nv~t~~td~r~s~vt~dRl~lp~ad~ytl~i~ 191 (484)
T COG5459 115 QSILDVGAGPGTGLWALNDIWPDLKSAVILEASP-ALRKVGDTLAE--NVSTEKTDWRASDVTEDRLSLPAADLYTLAIV 191 (484)
T ss_pred chhhccCCCCchhhhhhcccCCCchhhhhhccCH-HHHHHHHHHHh--hcccccCCCCCCccchhccCCCccceeehhhh
Confidence 5699999999998888888774444677789887 44444444443 34333333322210 01 11246777764
Q ss_pred -eCCC------hhHHHHHHHHHhccCCCCcEEEEEE
Q 021911 220 -DVAQ------PDQARILALNASYFLKAGGHFVISI 248 (305)
Q Consensus 220 -d~~~------~~~~~~l~~~a~~~LkpGG~lv~s~ 248 (305)
|-.. |.|. .+. ..+.+|.|||.|+|..
T Consensus 192 ~~eLl~d~~ek~i~~-~ie-~lw~l~~~gg~lVivE 225 (484)
T COG5459 192 LDELLPDGNEKPIQV-NIE-RLWNLLAPGGHLVIVE 225 (484)
T ss_pred hhhhccccCcchHHH-HHH-HHHHhccCCCeEEEEe
Confidence 2222 2222 333 7889999999999987
|
|
| >KOG1562 consensus Spermidine synthase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=96.05 E-value=0.049 Score=49.60 Aligned_cols=145 Identities=15% Similarity=0.087 Sum_probs=86.2
Q ss_pred CCEEEEEecCCCccHHHHHhhhCCCcEEEEEeCChHHHHHHHHHH----HcC--CCeEEEEccCCCCcccccCCCcEeEE
Q 021911 144 GARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMA----KKR--TNVIPIIEDARHPAKYRMLVGMVDVI 217 (305)
Q Consensus 144 g~~VLDlG~G~G~~t~~la~~~~~~~~V~avD~s~~~~~~l~~~a----~~~--~nI~~~~~D~~~~~~~~~~~~~fD~V 217 (305)
-++||-+|-|-|.+....+.+ ..-.++.-+|++...++--++.. ... +.|.++.+|-..+... ...++||+|
T Consensus 122 pkkvlVVgggDggvlrevikH-~~ve~i~~~eiD~~Vie~sk~y~p~la~gy~~~~v~l~iGDG~~fl~~-~~~~~~dVi 199 (337)
T KOG1562|consen 122 PKKVLVVGGGDGGVLREVIKH-KSVENILLCEIDENVIESSKQYLPTLACGYEGKKVKLLIGDGFLFLED-LKENPFDVI 199 (337)
T ss_pred CCeEEEEecCCccceeeeecc-ccccceeeehhhHHHHHHHHHHhHHHhcccCCCceEEEeccHHHHHHH-hccCCceEE
Confidence 489999999999998888876 22346788888873322222111 111 6788888987655432 125799999
Q ss_pred EEeCCChh-------HHHHHHHHHhccCCCCcEEEEEEcccccCCCCchhhhHHHHHHHHHHCCCcEeE--EeecCCCCC
Q 021911 218 FSDVAQPD-------QARILALNASYFLKAGGHFVISIKANCIDSTVPAEAVFQSEVKKLQQDQFKPFE--QVTLEPFER 288 (305)
Q Consensus 218 ~~d~~~~~-------~~~~l~~~a~~~LkpGG~lv~s~~~~~i~~~~~~~~v~~~~~~~l~~~Gf~~~e--~~~l~p~~~ 288 (305)
+.|...|. |...+. -+.+.||++|++++.- .|++.. .-+.++...+-..-|...+ .-++..|+-
T Consensus 200 i~dssdpvgpa~~lf~~~~~~-~v~~aLk~dgv~~~q~--ec~wl~----~~~i~e~r~~~~~~f~~t~ya~ttvPTyps 272 (337)
T KOG1562|consen 200 ITDSSDPVGPACALFQKPYFG-LVLDALKGDGVVCTQG--ECMWLH----LDYIKEGRSFCYVIFDLTAYAITTVPTYPS 272 (337)
T ss_pred EEecCCccchHHHHHHHHHHH-HHHHhhCCCcEEEEec--ceehHH----HHHHHHHHHhHHHhcCccceeeecCCCCcc
Confidence 99887442 444444 6789999999998875 443222 1223333333222244332 223445665
Q ss_pred ceEEEEEEE
Q 021911 289 DHACVVGGY 297 (305)
Q Consensus 289 ~~~~vv~~~ 297 (305)
.+..++-..
T Consensus 273 g~igf~l~s 281 (337)
T KOG1562|consen 273 GRIGFMLCS 281 (337)
T ss_pred ceEEEEEec
Confidence 555555443
|
|
| >PRK13699 putative methylase; Provisional | Back alignment and domain information |
|---|
Probab=95.92 E-value=0.023 Score=50.33 Aligned_cols=76 Identities=12% Similarity=-0.018 Sum_probs=47.8
Q ss_pred eEEEEccCCCCcccccCCCcEeEEEEeCCCh------------------hHHHHHHHHHhccCCCCcEEEEEEcccccCC
Q 021911 194 VIPIIEDARHPAKYRMLVGMVDVIFSDVAQP------------------DQARILALNASYFLKAGGHFVISIKANCIDS 255 (305)
Q Consensus 194 I~~~~~D~~~~~~~~~~~~~fD~V~~d~~~~------------------~~~~~l~~~a~~~LkpGG~lv~s~~~~~i~~ 255 (305)
+++++.|+.+.... +.++++|+||.|+|-- .....+. +++++|||+|.+++.. . ..
T Consensus 2 ~~l~~gD~le~l~~-lpd~SVDLIiTDPPY~i~~~~~~~~~~~~~~~~ew~~~~l~-E~~RVLKpgg~l~if~---~-~~ 75 (227)
T PRK13699 2 SRFILGNCIDVMAR-FPDNAVDFILTDPPYLVGFRDRQGRTIAGDKTDEWLQPACN-EMYRVLKKDALMVSFY---G-WN 75 (227)
T ss_pred CeEEechHHHHHHh-CCccccceEEeCCCcccccccCCCcccccccHHHHHHHHHH-HHHHHcCCCCEEEEEe---c-cc
Confidence 35667787654322 3467999999999831 1224454 8999999999888653 1 00
Q ss_pred CCchhhhHHHHHHHHHHCCCcEeEEe
Q 021911 256 TVPAEAVFQSEVKKLQQDQFKPFEQV 281 (305)
Q Consensus 256 ~~~~~~v~~~~~~~l~~~Gf~~~e~~ 281 (305)
. .......+++.||.+...+
T Consensus 76 --~----~~~~~~al~~~GF~l~~~I 95 (227)
T PRK13699 76 --R----VDRFMAAWKNAGFSVVGHL 95 (227)
T ss_pred --c----HHHHHHHHHHCCCEEeeEE
Confidence 0 1122445678899877644
|
|
| >PF02005 TRM: N2,N2-dimethylguanosine tRNA methyltransferase; InterPro: IPR002905 This enzyme 2 | Back alignment and domain information |
|---|
Probab=95.89 E-value=0.016 Score=55.22 Aligned_cols=101 Identities=22% Similarity=0.078 Sum_probs=69.7
Q ss_pred CCCEEEEEecCCCccHHHHHhhhCCCcEEEEEeCChHHHHHHHHHHHcC---C-CeEEEEccCCCCcccccCCCcEeEEE
Q 021911 143 PGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKR---T-NVIPIIEDARHPAKYRMLVGMVDVIF 218 (305)
Q Consensus 143 ~g~~VLDlG~G~G~~t~~la~~~~~~~~V~avD~s~~~~~~l~~~a~~~---~-nI~~~~~D~~~~~~~~~~~~~fD~V~ 218 (305)
...+|||.=||+|.=++-.+..+.....|++-|+|+.+++.+.++++.+ . .+++.+.|+..... .....||+|=
T Consensus 49 ~~~~~lDalaasGvR~iRy~~E~~~~~~v~~NDi~~~a~~~i~~N~~~N~~~~~~~~v~~~DAn~ll~--~~~~~fD~ID 126 (377)
T PF02005_consen 49 GPIRVLDALAASGVRGIRYAKELAGVDKVTANDISPEAVELIKRNLELNGLEDERIEVSNMDANVLLY--SRQERFDVID 126 (377)
T ss_dssp S-EEEEETT-TTSHHHHHHHHH-SSECEEEEEES-HHHHHHHHHHHHHCT-SGCCEEEEES-HHHHHC--HSTT-EEEEE
T ss_pred CCceEEeccccccHHHHHHHHHcCCCCEEEEecCCHHHHHHHHHhHhhccccCceEEEehhhHHHHhh--hccccCCEEE
Confidence 3469999999999999999988655568999999998877777776655 3 47888889866532 1357899999
Q ss_pred EeCC-ChhHHHHHHHHHhccCCCCcEEEEEE
Q 021911 219 SDVA-QPDQARILALNASYFLKAGGHFVISI 248 (305)
Q Consensus 219 ~d~~-~~~~~~~l~~~a~~~LkpGG~lv~s~ 248 (305)
+|+- .|. ..|. .|.+.+|.||.|.++.
T Consensus 127 lDPfGSp~--pfld-sA~~~v~~gGll~vTa 154 (377)
T PF02005_consen 127 LDPFGSPA--PFLD-SALQAVKDGGLLCVTA 154 (377)
T ss_dssp E--SS--H--HHHH-HHHHHEEEEEEEEEEE
T ss_pred eCCCCCcc--HhHH-HHHHHhhcCCEEEEec
Confidence 9876 332 3344 7778999999998864
|
1.1.32 from EC uses S-adenosyl-L-methionine to methylate tRNA: |
| >KOG1227 consensus Putative methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.58 E-value=0.017 Score=52.51 Aligned_cols=131 Identities=19% Similarity=0.165 Sum_probs=80.4
Q ss_pred ccccCc-ceeEeecCCCceeeeeecCchhhHHHH----HHHccccccCCCCCCEEEEEecCCCccHHHHHhhhCCCcEEE
Q 021911 98 EAVYNE-KRISVQNEDGTKVEYRIWNPFRSKLAA----AVLGGVDNIWIKPGARVLYLGAASGTTVSHVSDIVGPNGVVY 172 (305)
Q Consensus 98 ~~~y~e-~~~~~~d~~~~~~~~~~~~~~~s~l~a----~ll~~l~~~~~~~g~~VLDlG~G~G~~t~~la~~~~~~~~V~ 172 (305)
..+|++ +++..-+. .-++.|+|...++.. ..+..+. ....+..|.||-||-|++|+...-.. ....|+
T Consensus 150 ~~L~Gd~gWV~~v~N----GI~~~~d~t~~MFS~GN~~EK~Rv~~--~sc~~eviVDLYAGIGYFTlpflV~a-gAk~V~ 222 (351)
T KOG1227|consen 150 QPLYGDLGWVKHVQN----GITQIWDPTKTMFSRGNIKEKKRVLN--TSCDGEVIVDLYAGIGYFTLPFLVTA-GAKTVF 222 (351)
T ss_pred ccccccccceeehhc----CeEEEechhhhhhhcCcHHHHHHhhh--cccccchhhhhhcccceEEeehhhcc-CccEEE
Confidence 345554 44444442 466778776655432 1111111 23456899999999999999544333 456999
Q ss_pred EEeCChHHHHHHHHHHHcCCCe----EEEEccCCCCcccccCCCcEeEEEEeCC-ChhHHHHHHHHHhccCCCCcE
Q 021911 173 AVEFSHRSGRDLVNMAKKRTNV----IPIIEDARHPAKYRMLVGMVDVIFSDVA-QPDQARILALNASYFLKAGGH 243 (305)
Q Consensus 173 avD~s~~~~~~l~~~a~~~~nI----~~~~~D~~~~~~~~~~~~~fD~V~~d~~-~~~~~~~l~~~a~~~LkpGG~ 243 (305)
|+|.+|++++.+...++.+ |+ ..+.+|-+.+. +....|.|.+-+- ...+. .. .|.+.|||.|-
T Consensus 223 A~EwNp~svEaLrR~~~~N-~V~~r~~i~~gd~R~~~----~~~~AdrVnLGLlPSse~~--W~-~A~k~Lk~egg 290 (351)
T KOG1227|consen 223 ACEWNPWSVEALRRNAEAN-NVMDRCRITEGDNRNPK----PRLRADRVNLGLLPSSEQG--WP-TAIKALKPEGG 290 (351)
T ss_pred EEecCHHHHHHHHHHHHhc-chHHHHHhhhccccccC----ccccchheeeccccccccc--hH-HHHHHhhhcCC
Confidence 9999999999988888775 32 23344555443 2357888876443 22222 12 45678888665
|
|
| >PHA01634 hypothetical protein | Back alignment and domain information |
|---|
Probab=95.58 E-value=0.045 Score=43.73 Aligned_cols=74 Identities=12% Similarity=-0.007 Sum_probs=47.3
Q ss_pred CCCEEEEEecCCCccHHHHHhhhCCCcEEEEEeCChHHHHHHHHHHHcCCCeEEEEccCCCCcccccCCCcEeEEEEeCC
Q 021911 143 PGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKRTNVIPIIEDARHPAKYRMLVGMVDVIFSDVA 222 (305)
Q Consensus 143 ~g~~VLDlG~G~G~~t~~la~~~~~~~~V~avD~s~~~~~~l~~~a~~~~nI~~~~~D~~~~~~~~~~~~~fD~V~~d~~ 222 (305)
.+.+|||+|+..|..++.++.. ....|+++|.++.....+.+..+. .||.-...-...++ -..+.||+...|--
T Consensus 28 k~KtV~dIGA~iGdSaiYF~l~--GAK~Vva~E~~~kl~k~~een~k~-nnI~DK~v~~~eW~---~~Y~~~Di~~iDCe 101 (156)
T PHA01634 28 YQRTIQIVGADCGSSALYFLLR--GASFVVQYEKEEKLRKKWEEVCAY-FNICDKAVMKGEWN---GEYEDVDIFVMDCE 101 (156)
T ss_pred cCCEEEEecCCccchhhHHhhc--CccEEEEeccCHHHHHHHHHHhhh-heeeeceeeccccc---ccCCCcceEEEEcc
Confidence 4689999999999999999976 567999999999544444333332 22211111111121 13478998887654
|
|
| >KOG2793 consensus Putative N2,N2-dimethylguanosine tRNA methyltransferase [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=95.57 E-value=0.25 Score=44.22 Aligned_cols=102 Identities=17% Similarity=0.201 Sum_probs=59.5
Q ss_pred CCEEEEEecCCCccHHHHHhhhCCCcEEEEEeCChHHHHHHHHHHHcC--------CCeEEEEccCCCCcccccCCCc-E
Q 021911 144 GARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKR--------TNVIPIIEDARHPAKYRMLVGM-V 214 (305)
Q Consensus 144 g~~VLDlG~G~G~~t~~la~~~~~~~~V~avD~s~~~~~~l~~~a~~~--------~nI~~~~~D~~~~~~~~~~~~~-f 214 (305)
..+||++|+|+|...+.+|... ..+|.-.|+.. ....+.....++ ..+.....+..++.......+. |
T Consensus 87 ~~~vlELGsGtglvG~~aa~~~--~~~v~ltD~~~-~~~~L~~~~~~~~~~l~~~g~~v~v~~L~Wg~~~~~~~~~~~~~ 163 (248)
T KOG2793|consen 87 YINVLELGSGTGLVGILAALLL--GAEVVLTDLPK-VVENLKFNRDKNNIALNQLGGSVIVAILVWGNALDVSFRLPNPF 163 (248)
T ss_pred ceeEEEecCCccHHHHHHHHHh--cceeccCCchh-hHHHHHHhhhhhhhhhhhcCCceeEEEEecCCcccHhhccCCcc
Confidence 4579999999997666666653 45777777654 333333332222 2556666666555443333445 9
Q ss_pred eEEEE-eCC-Chh-HHHHHHHHHhccCCCCcEEEEEEc
Q 021911 215 DVIFS-DVA-QPD-QARILALNASYFLKAGGHFVISIK 249 (305)
Q Consensus 215 D~V~~-d~~-~~~-~~~~l~~~a~~~LkpGG~lv~s~~ 249 (305)
|+|++ |+. .+. ...++. -+..+|..++.++++++
T Consensus 164 DlilasDvvy~~~~~e~Lv~-tla~ll~~~~~i~l~~~ 200 (248)
T KOG2793|consen 164 DLILASDVVYEEESFEGLVK-TLAFLLAKDGTIFLAYP 200 (248)
T ss_pred cEEEEeeeeecCCcchhHHH-HHHHHHhcCCeEEEEEe
Confidence 99987 333 222 222222 44567777777777773
|
|
| >PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus | Back alignment and domain information |
|---|
Probab=95.42 E-value=0.24 Score=38.36 Aligned_cols=91 Identities=13% Similarity=0.153 Sum_probs=63.7
Q ss_pred cCCCccHHHHHhhhCCCc-EEEEEeCChHHHHHHHHHHHcCCCeEEEEccCCCCccccc-CCCcEeEEEEeCCChhHHHH
Q 021911 152 AASGTTVSHVSDIVGPNG-VVYAVEFSHRSGRDLVNMAKKRTNVIPIIEDARHPAKYRM-LVGMVDVIFSDVAQPDQARI 229 (305)
Q Consensus 152 ~G~G~~t~~la~~~~~~~-~V~avD~s~~~~~~l~~~a~~~~nI~~~~~D~~~~~~~~~-~~~~fD~V~~d~~~~~~~~~ 229 (305)
||.|..+..+++.+.... .|+.+|.++ +..+.+... .+.++.+|+++...+.. ....+|.|++..........
T Consensus 4 ~G~g~~~~~i~~~L~~~~~~vvvid~d~----~~~~~~~~~-~~~~i~gd~~~~~~l~~a~i~~a~~vv~~~~~d~~n~~ 78 (116)
T PF02254_consen 4 IGYGRIGREIAEQLKEGGIDVVVIDRDP----ERVEELREE-GVEVIYGDATDPEVLERAGIEKADAVVILTDDDEENLL 78 (116)
T ss_dssp ES-SHHHHHHHHHHHHTTSEEEEEESSH----HHHHHHHHT-TSEEEES-TTSHHHHHHTTGGCESEEEEESSSHHHHHH
T ss_pred EcCCHHHHHHHHHHHhCCCEEEEEECCc----HHHHHHHhc-ccccccccchhhhHHhhcCccccCEEEEccCCHHHHHH
Confidence 788899999998876566 799999999 444445443 48899999988764421 23589999988876655544
Q ss_pred HHHHHhccCCCCcEEEEEE
Q 021911 230 LALNASYFLKAGGHFVISI 248 (305)
Q Consensus 230 l~~~a~~~LkpGG~lv~s~ 248 (305)
+. ...+-+.|..+++...
T Consensus 79 ~~-~~~r~~~~~~~ii~~~ 96 (116)
T PF02254_consen 79 IA-LLARELNPDIRIIARV 96 (116)
T ss_dssp HH-HHHHHHTTTSEEEEEE
T ss_pred HH-HHHHHHCCCCeEEEEE
Confidence 54 4556667777777765
|
The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A .... |
| >COG2933 Predicted SAM-dependent methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.17 E-value=0.11 Score=46.59 Aligned_cols=72 Identities=22% Similarity=0.240 Sum_probs=57.1
Q ss_pred CCCCCCEEEEEecCCCccHHHHHhhhCCCcEEEEEeCChHHHHHHHHHHHcCCCeEEEEccCCCCcccccCCCcEeEEEE
Q 021911 140 WIKPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKRTNVIPIIEDARHPAKYRMLVGMVDVIFS 219 (305)
Q Consensus 140 ~~~~g~~VLDlG~G~G~~t~~la~~~~~~~~V~avD~s~~~~~~l~~~a~~~~nI~~~~~D~~~~~~~~~~~~~fD~V~~ 219 (305)
.+.+++...|||+.+|.+|-.|.++ .-.||+||.-+ |.+.......|+....|-..+.+. ...+|-.+|
T Consensus 208 rL~~~M~avDLGAcPGGWTyqLVkr---~m~V~aVDng~-----ma~sL~dtg~v~h~r~DGfk~~P~---r~~idWmVC 276 (358)
T COG2933 208 RLAPGMWAVDLGACPGGWTYQLVKR---NMRVYAVDNGP-----MAQSLMDTGQVTHLREDGFKFRPT---RSNIDWMVC 276 (358)
T ss_pred hhcCCceeeecccCCCccchhhhhc---ceEEEEeccch-----hhhhhhcccceeeeeccCcccccC---CCCCceEEe
Confidence 5678999999999999999998876 35899999876 333444446788888898776543 368999999
Q ss_pred eCC
Q 021911 220 DVA 222 (305)
Q Consensus 220 d~~ 222 (305)
|+.
T Consensus 277 DmV 279 (358)
T COG2933 277 DMV 279 (358)
T ss_pred ehh
Confidence 998
|
|
| >PF05430 Methyltransf_30: S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR008471 This entry contains several uncharacterised bacterial proteins with no known function | Back alignment and domain information |
|---|
Probab=95.09 E-value=0.041 Score=44.02 Aligned_cols=86 Identities=19% Similarity=0.133 Sum_probs=53.3
Q ss_pred CeEEEEccCCCCcccccCCCcEeEEEEeCCC------hhHHHHHHHHHhccCCCCcEEEEEEcccccCCCCchhhhHHHH
Q 021911 193 NVIPIIEDARHPAKYRMLVGMVDVIFSDVAQ------PDQARILALNASYFLKAGGHFVISIKANCIDSTVPAEAVFQSE 266 (305)
Q Consensus 193 nI~~~~~D~~~~~~~~~~~~~fD~V~~d~~~------~~~~~~l~~~a~~~LkpGG~lv~s~~~~~i~~~~~~~~v~~~~ 266 (305)
++.+...|+.+..+. +...||+|+.|.-. .+..+++. ++.++++|+|.|.-.+ + . ...
T Consensus 32 ~L~L~~gDa~~~l~~--l~~~~Da~ylDgFsP~~nPelWs~e~~~-~l~~~~~~~~~l~Tys---~------a----~~V 95 (124)
T PF05430_consen 32 TLTLWFGDAREMLPQ--LDARFDAWYLDGFSPAKNPELWSEELFK-KLARLSKPGGTLATYS---S------A----GAV 95 (124)
T ss_dssp EEEEEES-HHHHHHH--B-T-EEEEEE-SS-TTTSGGGSSHHHHH-HHHHHEEEEEEEEES-----------B----HHH
T ss_pred EEEEEEcHHHHHHHh--CcccCCEEEecCCCCcCCcccCCHHHHH-HHHHHhCCCcEEEEee---c------h----HHH
Confidence 456777887654332 34799999998753 24677887 9999999998876654 1 1 112
Q ss_pred HHHHHHCCCcEeEEeecCCCCCceEEEEEEE
Q 021911 267 VKKLQQDQFKPFEQVTLEPFERDHACVVGGY 297 (305)
Q Consensus 267 ~~~l~~~Gf~~~e~~~l~p~~~~~~~vv~~~ 297 (305)
...|++.||.+.+.. .+.+..-+.+|.|
T Consensus 96 r~~L~~aGF~v~~~~---g~g~Kr~~~~a~~ 123 (124)
T PF05430_consen 96 RRALQQAGFEVEKVP---GFGRKREMLRAVK 123 (124)
T ss_dssp HHHHHHCTEEEEEEE----STTSSEEEEEEC
T ss_pred HHHHHHcCCEEEEcC---CCCCcchheEEEc
Confidence 467789999987654 4444455566654
|
; GO: 0016645 oxidoreductase activity, acting on the CH-NH group of donors, 0055114 oxidation-reduction process; PDB: 2E58_D 3SGL_A 3PVC_A 3AWI_D 3PS9_A 2QY6_A. |
| >KOG2078 consensus tRNA modification enzyme [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=95.09 E-value=0.016 Score=55.06 Aligned_cols=76 Identities=24% Similarity=0.187 Sum_probs=60.7
Q ss_pred cCchhhHHHHHHHccccccCCCCCCEEEEEecCCCccHHHHHhhhCCCcEEEEEeCChHHHHHHHHHHHcC----CCeEE
Q 021911 121 WNPFRSKLAAAVLGGVDNIWIKPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKR----TNVIP 196 (305)
Q Consensus 121 ~~~~~s~l~a~ll~~l~~~~~~~g~~VLDlG~G~G~~t~~la~~~~~~~~V~avD~s~~~~~~l~~~a~~~----~nI~~ 196 (305)
||+..+..-..+.. ..++++.|.|++||-|-++..++.. .+.||+.|+++++++-+..+++.+ .+|+.
T Consensus 232 WnsRL~~Eherlsg-----~fk~gevv~D~FaGvGPfa~Pa~kK---~crV~aNDLNpesik~Lk~ni~lNkv~~~~iei 303 (495)
T KOG2078|consen 232 WNSRLSHEHERLSG-----LFKPGEVVCDVFAGVGPFALPAAKK---GCRVYANDLNPESIKWLKANIKLNKVDPSAIEI 303 (495)
T ss_pred eeccchhHHHHHhh-----ccCCcchhhhhhcCcCccccchhhc---CcEEEecCCCHHHHHHHHHhccccccchhheee
Confidence 88777666666664 3578999999999999999999987 389999999998877777776655 35888
Q ss_pred EEccCCCC
Q 021911 197 IIEDARHP 204 (305)
Q Consensus 197 ~~~D~~~~ 204 (305)
+..|+..+
T Consensus 304 ~Nmda~~F 311 (495)
T KOG2078|consen 304 FNMDAKDF 311 (495)
T ss_pred ecccHHHH
Confidence 88877544
|
|
| >KOG1596 consensus Fibrillarin and related nucleolar RNA-binding proteins [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=95.03 E-value=0.067 Score=47.36 Aligned_cols=11 Identities=18% Similarity=0.332 Sum_probs=4.8
Q ss_pred CCccHHHHHhh
Q 021911 154 SGTTVSHVSDI 164 (305)
Q Consensus 154 ~G~~t~~la~~ 164 (305)
+|...+.+|+.
T Consensus 193 sGRdL~nmAkk 203 (317)
T KOG1596|consen 193 SGRDLINMAKK 203 (317)
T ss_pred chHHHHHHhhc
Confidence 34444444443
|
|
| >PF01555 N6_N4_Mtase: DNA methylase; InterPro: IPR002941 This domain is found in DNA methylases | Back alignment and domain information |
|---|
Probab=94.96 E-value=0.021 Score=49.44 Aligned_cols=51 Identities=24% Similarity=0.242 Sum_probs=32.8
Q ss_pred chhhHHHHHHHccccccCCCCCCEEEEEecCCCccHHHHHhhhCCCcEEEEEeCChHH
Q 021911 123 PFRSKLAAAVLGGVDNIWIKPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRS 180 (305)
Q Consensus 123 ~~~s~l~a~ll~~l~~~~~~~g~~VLDlG~G~G~~t~~la~~~~~~~~V~avD~s~~~ 180 (305)
+....|+..++. +...+++.|||..||+|+++..+... + .+.+++|+++..
T Consensus 175 ~kP~~l~~~lI~----~~t~~gdiVlDpF~GSGTT~~aa~~l-~--R~~ig~E~~~~y 225 (231)
T PF01555_consen 175 QKPVELIERLIK----ASTNPGDIVLDPFAGSGTTAVAAEEL-G--RRYIGIEIDEEY 225 (231)
T ss_dssp -S-HHHHHHHHH----HHS-TT-EEEETT-TTTHHHHHHHHT-T---EEEEEESSHHH
T ss_pred cCCHHHHHHHHH----hhhccceeeehhhhccChHHHHHHHc-C--CeEEEEeCCHHH
Confidence 344556666653 24578999999999999776665554 3 479999999943
|
In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. This family contains both N-4 cytosine-specific DNA methylases and N-6 Adenine-specific DNA methylases. N-4 cytosine-specific DNA methylases (2.1.1.113 from EC) [] are enzymes that specifically methylate the amino group at the C-4 position of cytosines in DNA. Such enzymes are found as components of type II restriction-modification systems in prokaryotes. Such enzymes recognise a specific sequence in DNA and methylate a cytosine in that sequence. By this action they protect DNA from cleavage by type II restriction enzymes that recognise the same sequence. N-6 adenine-specific DNA methylases (2.1.1.72 from EC) (A-Mtase) are enzymes that specifically methylate the amino group at the C-6 position of adenines in DNA. Such enzymes are found in the three existing types of bacterial restriction-modification systems (in type I system the A-Mtase is the product of the hsdM gene, and in type III it is the product of the mod gene). All of these enzymes recognise a specific sequence in DNA and methylate an adenine in that sequence.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2ZIF_A 2ZIE_A 2ZIG_A 1NW6_A 1NW8_A 1NW7_A 1NW5_A 1EG2_A 1BOO_A 1G60_B .... |
| >PRK11524 putative methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=94.73 E-value=0.066 Score=48.94 Aligned_cols=54 Identities=24% Similarity=0.155 Sum_probs=38.7
Q ss_pred CeEEEEccCCCCcccccCCCcEeEEEEeCCChh-------------------HHHHHHHHHhccCCCCcEEEEEE
Q 021911 193 NVIPIIEDARHPAKYRMLVGMVDVIFSDVAQPD-------------------QARILALNASYFLKAGGHFVISI 248 (305)
Q Consensus 193 nI~~~~~D~~~~~~~~~~~~~fD~V~~d~~~~~-------------------~~~~l~~~a~~~LkpGG~lv~s~ 248 (305)
+..+++.|+.+.... +..++||+|++|+|... ....+. ++.++|||+|.|++..
T Consensus 8 ~~~i~~gD~~~~l~~-l~~~siDlIitDPPY~~~~~~~~~~~~~~~~~~~~~l~~~l~-~~~rvLK~~G~i~i~~ 80 (284)
T PRK11524 8 AKTIIHGDALTELKK-IPSESVDLIFADPPYNIGKNFDGLIEAWKEDLFIDWLYEWID-ECHRVLKKQGTMYIMN 80 (284)
T ss_pred CCEEEeccHHHHHHh-cccCcccEEEECCCcccccccccccccccHHHHHHHHHHHHH-HHHHHhCCCcEEEEEc
Confidence 456788888765322 23579999999999310 123455 8999999999999874
|
|
| >cd08283 FDH_like_1 Glutathione-dependent formaldehyde dehydrogenase related proteins, child 1 | Back alignment and domain information |
|---|
Probab=94.63 E-value=0.071 Score=50.69 Aligned_cols=103 Identities=20% Similarity=0.242 Sum_probs=63.7
Q ss_pred CCCCCCEEEEEecCC-CccHHHHHhhhCCCcEEEEEeCChHHHHHHHHHHHcCCCeEEEEccCCC-Ccc-c-cc-CCCcE
Q 021911 140 WIKPGARVLYLGAAS-GTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKRTNVIPIIEDARH-PAK-Y-RM-LVGMV 214 (305)
Q Consensus 140 ~~~~g~~VLDlG~G~-G~~t~~la~~~~~~~~V~avD~s~~~~~~l~~~a~~~~nI~~~~~D~~~-~~~-~-~~-~~~~f 214 (305)
.+.++.+||.+|||+ |..+..+|+.++ ...|+++|.++ +..+.+++...+..+..+-.+ ... . .. ....+
T Consensus 181 ~~~~g~~VlV~g~G~vG~~~~~la~~~g-~~~vi~~~~~~----~~~~~~~~~~~~~vi~~~~~~~~~~~l~~~~~~~~~ 255 (386)
T cd08283 181 EVKPGDTVAVWGCGPVGLFAARSAKLLG-AERVIAIDRVP----ERLEMARSHLGAETINFEEVDDVVEALRELTGGRGP 255 (386)
T ss_pred cCCCCCEEEEECCCHHHHHHHHHHHHcC-CCEEEEEcCCH----HHHHHHHHcCCcEEEcCCcchHHHHHHHHHcCCCCC
Confidence 567889999999877 778888888864 23699999998 445555543223322211111 100 0 01 12368
Q ss_pred eEEEEeCC------------------ChhHHHHHHHHHhccCCCCcEEEEEE
Q 021911 215 DVIFSDVA------------------QPDQARILALNASYFLKAGGHFVISI 248 (305)
Q Consensus 215 D~V~~d~~------------------~~~~~~~l~~~a~~~LkpGG~lv~s~ 248 (305)
|+||-... .++....+. .+.+.|+++|+++...
T Consensus 256 D~vld~vg~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~l~~~G~iv~~g 306 (386)
T cd08283 256 DVCIDAVGMEAHGSPLHKAEQALLKLETDRPDALR-EAIQAVRKGGTVSIIG 306 (386)
T ss_pred CEEEECCCCcccccccccccccccccccCchHHHH-HHHHHhccCCEEEEEc
Confidence 98886542 123344565 7889999999998864
|
Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. T |
| >PRK11524 putative methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=94.51 E-value=0.037 Score=50.59 Aligned_cols=55 Identities=20% Similarity=0.047 Sum_probs=37.8
Q ss_pred hHHHHHHHccccccCCCCCCEEEEEecCCCccHHHHHhhhCCCcEEEEEeCChHHHHHHHHH
Q 021911 126 SKLAAAVLGGVDNIWIKPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNM 187 (305)
Q Consensus 126 s~l~a~ll~~l~~~~~~~g~~VLDlG~G~G~~t~~la~~~~~~~~V~avD~s~~~~~~l~~~ 187 (305)
..|...++. +.-.+++.|||..||+|+++....+. + .+.+++|+++...+-+.+.
T Consensus 195 ~~L~erlI~----~~S~~GD~VLDPF~GSGTT~~AA~~l-g--R~~IG~Ei~~~Y~~~a~~R 249 (284)
T PRK11524 195 EALLKRIIL----ASSNPGDIVLDPFAGSFTTGAVAKAS-G--RKFIGIEINSEYIKMGLRR 249 (284)
T ss_pred HHHHHHHHH----HhCCCCCEEEECCCCCcHHHHHHHHc-C--CCEEEEeCCHHHHHHHHHH
Confidence 345555442 24578999999999999777665554 3 4799999999554444333
|
|
| >COG1867 TRM1 N2,N2-dimethylguanosine tRNA methyltransferase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=94.28 E-value=0.22 Score=46.80 Aligned_cols=98 Identities=21% Similarity=0.142 Sum_probs=71.4
Q ss_pred CCEEEEEecCCCccHHHHHhhhCCCcEEEEEeCChHHHHHHHHHHHcC--CCeEEEEccCCCCcccccCCCcEeEEEEeC
Q 021911 144 GARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKR--TNVIPIIEDARHPAKYRMLVGMVDVIFSDV 221 (305)
Q Consensus 144 g~~VLDlG~G~G~~t~~la~~~~~~~~V~avD~s~~~~~~l~~~a~~~--~nI~~~~~D~~~~~~~~~~~~~fD~V~~d~ 221 (305)
..+|||.-+|+|.=.+-+|...+.. .|+.-|+||.+++-+.++++.+ .++..+..|+...... ....||+|=.|+
T Consensus 53 ~~~v~DalsatGiRgIRya~E~~~~-~v~lNDisp~Avelik~Nv~~N~~~~~~v~n~DAN~lm~~--~~~~fd~IDiDP 129 (380)
T COG1867 53 PKRVLDALSATGIRGIRYAVETGVV-KVVLNDISPKAVELIKENVRLNSGEDAEVINKDANALLHE--LHRAFDVIDIDP 129 (380)
T ss_pred CeEEeecccccchhHhhhhhhcCcc-EEEEccCCHHHHHHHHHHHHhcCcccceeecchHHHHHHh--cCCCccEEecCC
Confidence 6899999999999999999876543 8999999998877776666655 3455666777554322 236899998887
Q ss_pred C-ChhHHHHHHHHHhccCCCCcEEEEE
Q 021911 222 A-QPDQARILALNASYFLKAGGHFVIS 247 (305)
Q Consensus 222 ~-~~~~~~~l~~~a~~~LkpGG~lv~s 247 (305)
- .|. ..+. .|.+.++.+|.|.++
T Consensus 130 FGSPa--PFlD-aA~~s~~~~G~l~vT 153 (380)
T COG1867 130 FGSPA--PFLD-AALRSVRRGGLLCVT 153 (380)
T ss_pred CCCCc--hHHH-HHHHHhhcCCEEEEE
Confidence 5 332 2233 666788889999885
|
|
| >KOG2798 consensus Putative trehalase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=94.15 E-value=0.75 Score=42.45 Aligned_cols=50 Identities=20% Similarity=0.279 Sum_probs=32.4
Q ss_pred HHHHHHHccccccCCC-----CCCEEEEEecCCCccHHHHHhhhCCCcEEEEEeCChH
Q 021911 127 KLAAAVLGGVDNIWIK-----PGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHR 179 (305)
Q Consensus 127 ~l~a~ll~~l~~~~~~-----~g~~VLDlG~G~G~~t~~la~~~~~~~~V~avD~s~~ 179 (305)
.+...++..|..+.+. ..-+||--|||.|.++..||.. +. .+-+-|+|--
T Consensus 129 ~~ykpii~~l~~lfp~~~~~r~ki~iLvPGaGlGRLa~dla~~-G~--~~qGNEfSy~ 183 (369)
T KOG2798|consen 129 QLYKPIIEELNSLFPSRGKERTKIRILVPGAGLGRLAYDLACL-GF--KCQGNEFSYF 183 (369)
T ss_pred hhhhhHHHHHHhhCCCccccccCceEEecCCCchhHHHHHHHh-cc--cccccHHHHH
Confidence 4444454444433332 3468999999999999999987 33 3445577753
|
|
| >PF03492 Methyltransf_7: SAM dependent carboxyl methyltransferase; InterPro: IPR005299 This family of plant methyltransferases contains enzymes that act on a variety of substrates including salicylic acid, jasmonic acid and 7-Methylxanthine | Back alignment and domain information |
|---|
Probab=94.05 E-value=0.38 Score=45.06 Aligned_cols=23 Identities=22% Similarity=0.177 Sum_probs=16.4
Q ss_pred CCCCEEEEEecCCCccHHHHHhh
Q 021911 142 KPGARVLYLGAASGTTVSHVSDI 164 (305)
Q Consensus 142 ~~g~~VLDlG~G~G~~t~~la~~ 164 (305)
....+|+|+||.+|..|+.+.+.
T Consensus 15 ~~~~~iaD~GcS~G~Nsl~~~~~ 37 (334)
T PF03492_consen 15 PKPFRIADLGCSSGPNSLLAVSN 37 (334)
T ss_dssp TTEEEEEEES--SSHHHHHHHHH
T ss_pred CCceEEEecCCCCCccHHHHHHH
Confidence 33479999999999998876644
|
Caffeine is synthesized through sequential three-step methylation of xanthine derivatives at positions 7-N, 3-N, and 1-N. The protein 7-methylxanthine methyltransferase (designated as CaMXMT) catalyses the second step to produce theobromine [].; GO: 0008168 methyltransferase activity; PDB: 2EFJ_A 1M6E_X 2EG5_C 3B5I_B. |
| >PRK09880 L-idonate 5-dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=93.92 E-value=0.36 Score=44.91 Aligned_cols=98 Identities=19% Similarity=0.259 Sum_probs=54.8
Q ss_pred CCCCCCEEEEEecC-CCccHHHHHhhhCCCcEEEEEeCChHHHHHHHHHHHcCCCeEEEEccCCC--CcccccCCCcEeE
Q 021911 140 WIKPGARVLYLGAA-SGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKRTNVIPIIEDARH--PAKYRMLVGMVDV 216 (305)
Q Consensus 140 ~~~~g~~VLDlG~G-~G~~t~~la~~~~~~~~V~avD~s~~~~~~l~~~a~~~~nI~~~~~D~~~--~~~~~~~~~~fD~ 216 (305)
...++++||-.||| .|..+..+|+..+ ...|+++|.++.. ++.+++.. ...+ .|..+ ..........+|+
T Consensus 166 ~~~~g~~VlV~G~G~vG~~aiqlak~~G-~~~Vi~~~~~~~~----~~~a~~lG-a~~v-i~~~~~~~~~~~~~~g~~D~ 238 (343)
T PRK09880 166 GDLQGKRVFVSGVGPIGCLIVAAVKTLG-AAEIVCADVSPRS----LSLAREMG-ADKL-VNPQNDDLDHYKAEKGYFDV 238 (343)
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHcC-CcEEEEEeCCHHH----HHHHHHcC-CcEE-ecCCcccHHHHhccCCCCCE
Confidence 45578999998864 2334455666643 2368999999844 34444331 1111 11111 1111011235899
Q ss_pred EEEeCCChhHHHHHHHHHhccCCCCcEEEEEE
Q 021911 217 IFSDVAQPDQARILALNASYFLKAGGHFVISI 248 (305)
Q Consensus 217 V~~d~~~~~~~~~l~~~a~~~LkpGG~lv~s~ 248 (305)
||-....+. .+. .+.++|+++|++++.-
T Consensus 239 vid~~G~~~---~~~-~~~~~l~~~G~iv~~G 266 (343)
T PRK09880 239 SFEVSGHPS---SIN-TCLEVTRAKGVMVQVG 266 (343)
T ss_pred EEECCCCHH---HHH-HHHHHhhcCCEEEEEc
Confidence 986655543 233 5667999999998763
|
|
| >COG4301 Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=93.84 E-value=1 Score=40.32 Aligned_cols=106 Identities=14% Similarity=0.156 Sum_probs=70.3
Q ss_pred CCCCCEEEEEecCCCccHHHHHhhhCCC---cEEEEEeCChHHHHHHHHH-HHcCCC--eEEEEccCCCCcccccCCCcE
Q 021911 141 IKPGARVLYLGAASGTTVSHVSDIVGPN---GVVYAVEFSHRSGRDLVNM-AKKRTN--VIPIIEDARHPAKYRMLVGMV 214 (305)
Q Consensus 141 ~~~g~~VLDlG~G~G~~t~~la~~~~~~---~~V~avD~s~~~~~~l~~~-a~~~~n--I~~~~~D~~~~~~~~~~~~~f 214 (305)
+......+|+|+|+-.++..|.+.+.+. .+.+.+|+|...++...+. +...+. |.-++.|....... ++..-
T Consensus 76 ~~g~~~lveLGsGns~Ktr~Llda~~~~~~~~ryvpiDv~a~iL~~ta~ai~~~y~~l~v~~l~~~~~~~La~--~~~~~ 153 (321)
T COG4301 76 ITGACTLVELGSGNSTKTRILLDALAHRGSLLRYVPIDVSASILRATATAILREYPGLEVNALCGDYELALAE--LPRGG 153 (321)
T ss_pred hhCcceEEEecCCccHHHHHHHHHhhhcCCcceeeeecccHHHHHHHHHHHHHhCCCCeEeehhhhHHHHHhc--ccCCC
Confidence 4557899999999999999999887543 4788999998655543333 333444 44556665443221 22333
Q ss_pred eEEEEeCC------ChhHHHHHHHHHhccCCCCcEEEEEE
Q 021911 215 DVIFSDVA------QPDQARILALNASYFLKAGGHFVISI 248 (305)
Q Consensus 215 D~V~~d~~------~~~~~~~l~~~a~~~LkpGG~lv~s~ 248 (305)
-.+++.+- .|+....+..++...|.||-+|++-+
T Consensus 154 ~Rl~~flGStlGN~tp~e~~~Fl~~l~~a~~pGd~~LlGv 193 (321)
T COG4301 154 RRLFVFLGSTLGNLTPGECAVFLTQLRGALRPGDYFLLGV 193 (321)
T ss_pred eEEEEEecccccCCChHHHHHHHHHHHhcCCCcceEEEec
Confidence 34444222 46666666658999999999999976
|
|
| >PTZ00357 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=93.78 E-value=0.45 Score=48.28 Aligned_cols=97 Identities=19% Similarity=0.197 Sum_probs=60.9
Q ss_pred EEEEEecCCCccHHHHHhh---hCCCcEEEEEeCChHHHHHHHHHH-H--cCC--------CeEEEEccCCCCcccc---
Q 021911 146 RVLYLGAASGTTVSHVSDI---VGPNGVVYAVEFSHRSGRDLVNMA-K--KRT--------NVIPIIEDARHPAKYR--- 208 (305)
Q Consensus 146 ~VLDlG~G~G~~t~~la~~---~~~~~~V~avD~s~~~~~~l~~~a-~--~~~--------nI~~~~~D~~~~~~~~--- 208 (305)
.|+-+|||-|-++....+. .+-+.+|+|||-++.++.-++... . ... .|++|..|++.+....
T Consensus 703 VImVVGAGRGPLVdraLrAak~~gvkVrIyAVEKNPpAA~~tllr~~N~eeW~n~~~~~G~~VtII~sDMR~W~~pe~~~ 782 (1072)
T PTZ00357 703 HLVLLGCGRGPLIDECLHAVSALGVRLRIFAIEKNLPAAAFTRMRWANDPEWTQLAYTFGHTLEVIVADGRTIATAAENG 782 (1072)
T ss_pred EEEEEcCCccHHHHHHHHHHHHcCCcEEEEEEecCcchHHHHHHHHhcccccccccccCCCeEEEEeCcccccccccccc
Confidence 5889999999977655543 344568999999965432222221 1 112 3899999999874320
Q ss_pred -----cCCCcEeEEEEeCC-----ChhHHHHHHHHHhccCCC----CcE
Q 021911 209 -----MLVGMVDVIFSDVA-----QPDQARILALNASYFLKA----GGH 243 (305)
Q Consensus 209 -----~~~~~fD~V~~d~~-----~~~~~~~l~~~a~~~Lkp----GG~ 243 (305)
....++|+||+... ...-.+.|. -+.++||+ +|.
T Consensus 783 s~~~P~~~gKaDIVVSELLGSFGDNELSPECLD-GaQrfLKdiqhsdGI 830 (1072)
T PTZ00357 783 SLTLPADFGLCDLIVSELLGSLGDNELSPECLE-AFHAQLEDIQLSRGI 830 (1072)
T ss_pred cccccccccccceehHhhhcccccccCCHHHHH-HHHHhhhhhcccccc
Confidence 11237999998554 222334444 56678876 665
|
|
| >cd08237 ribitol-5-phosphate_DH ribitol-5-phosphate dehydrogenase | Back alignment and domain information |
|---|
Probab=93.75 E-value=0.43 Score=44.48 Aligned_cols=95 Identities=11% Similarity=0.043 Sum_probs=53.0
Q ss_pred CCCCCCEEEEEecCCCc-cHHHHHhhhCCCcEEEEEeCChHHHHHHHHHHHcCCCeEEEEccCCCCcccccCCCcEeEEE
Q 021911 140 WIKPGARVLYLGAASGT-TVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKRTNVIPIIEDARHPAKYRMLVGMVDVIF 218 (305)
Q Consensus 140 ~~~~g~~VLDlG~G~G~-~t~~la~~~~~~~~V~avD~s~~~~~~l~~~a~~~~nI~~~~~D~~~~~~~~~~~~~fD~V~ 218 (305)
.++++++||-+|||+=. .+..++..+....+|+++|.++..+ +.+++.... ....+.. . ...+|+||
T Consensus 160 ~~~~g~~VlV~G~G~vGl~~~~~a~~~~g~~~vi~~~~~~~k~----~~a~~~~~~-~~~~~~~----~---~~g~d~vi 227 (341)
T cd08237 160 AHKDRNVIGVWGDGNLGYITALLLKQIYPESKLVVFGKHQEKL----DLFSFADET-YLIDDIP----E---DLAVDHAF 227 (341)
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHhcCCCcEEEEeCcHhHH----HHHhhcCce-eehhhhh----h---ccCCcEEE
Confidence 35789999999875322 3344455422235799999998433 233321111 1111111 0 12489888
Q ss_pred EeCCChhHHHHHHHHHhccCCCCcEEEEE
Q 021911 219 SDVAQPDQARILALNASYFLKAGGHFVIS 247 (305)
Q Consensus 219 ~d~~~~~~~~~l~~~a~~~LkpGG~lv~s 247 (305)
-....+.....+. .+.++|+++|++++.
T Consensus 228 D~~G~~~~~~~~~-~~~~~l~~~G~iv~~ 255 (341)
T cd08237 228 ECVGGRGSQSAIN-QIIDYIRPQGTIGLM 255 (341)
T ss_pred ECCCCCccHHHHH-HHHHhCcCCcEEEEE
Confidence 5444221233455 677899999999875
|
NAD-linked ribitol-5-phosphate dehydrogenase, a member of the MDR/zinc-dependent alcohol dehydrogenase-like family, oxidizes the phosphate ester of ribitol-5-phosphate to xylulose-5-phosphate of the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase ( |
| >PRK13699 putative methylase; Provisional | Back alignment and domain information |
|---|
Probab=93.53 E-value=0.21 Score=44.14 Aligned_cols=56 Identities=20% Similarity=0.130 Sum_probs=38.3
Q ss_pred hHHHHHHHccccccCCCCCCEEEEEecCCCccHHHHHhhhCCCcEEEEEeCChHHHHHHHHHH
Q 021911 126 SKLAAAVLGGVDNIWIKPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMA 188 (305)
Q Consensus 126 s~l~a~ll~~l~~~~~~~g~~VLDlG~G~G~~t~~la~~~~~~~~V~avD~s~~~~~~l~~~a 188 (305)
..|...++. ....+++.|||..||+|++.....+. + .+.+++|+++...+...+..
T Consensus 150 ~~l~~~~i~----~~s~~g~~vlDpf~Gsgtt~~aa~~~-~--r~~~g~e~~~~y~~~~~~r~ 205 (227)
T PRK13699 150 VTSLQPLIE----SFTHPNAIVLDPFAGSGSTCVAALQS-G--RRYIGIELLEQYHRAGQQRL 205 (227)
T ss_pred HHHHHHHHH----HhCCCCCEEEeCCCCCCHHHHHHHHc-C--CCEEEEecCHHHHHHHHHHH
Confidence 344554442 24568999999999999877766554 3 47899999996554444443
|
|
| >KOG1253 consensus tRNA methyltransferase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=93.49 E-value=0.044 Score=53.08 Aligned_cols=105 Identities=19% Similarity=0.132 Sum_probs=77.1
Q ss_pred CCCCCEEEEEecCCCccHHHHHhhhCCCcEEEEEeCChHHHHHHHHHHHcC---CCeEEEEccCCCCccc-ccCCCcEeE
Q 021911 141 IKPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKR---TNVIPIIEDARHPAKY-RMLVGMVDV 216 (305)
Q Consensus 141 ~~~g~~VLDlG~G~G~~t~~la~~~~~~~~V~avD~s~~~~~~l~~~a~~~---~nI~~~~~D~~~~~~~-~~~~~~fD~ 216 (305)
..+..+|||.=|++|.-++..|..+..-..|+|.|++++++.....+++.+ ..|+..+.|+....-. .+....||+
T Consensus 107 ~~~~l~vLealsAtGlrslRya~El~~v~~v~AnD~~~~aV~~i~~Nv~~N~v~~ive~~~~DA~~lM~~~~~~~~~FDv 186 (525)
T KOG1253|consen 107 EEKSLRVLEALSATGLRSLRYAKELPGVRQVVANDLNENAVTSIQRNVELNGVEDIVEPHHSDANVLMYEHPMVAKFFDV 186 (525)
T ss_pred ccCcchHHHHhhhhhHHHHHHHHHhcchhhhcccCCCHHHHHHHHhhhhhcCchhhcccccchHHHHHHhccccccccce
Confidence 345679999999999999999998876678999999998877666666554 4566777787554321 123468999
Q ss_pred EEEeCCChhHHHHHHHHHhccCCCCcEEEEE
Q 021911 217 IFSDVAQPDQARILALNASYFLKAGGHFVIS 247 (305)
Q Consensus 217 V~~d~~~~~~~~~l~~~a~~~LkpGG~lv~s 247 (305)
|=+|+--.. ...|. .|.+.+..||.|.+.
T Consensus 187 IDLDPyGs~-s~FLD-sAvqav~~gGLL~vT 215 (525)
T KOG1253|consen 187 IDLDPYGSP-SPFLD-SAVQAVRDGGLLCVT 215 (525)
T ss_pred EecCCCCCc-cHHHH-HHHHHhhcCCEEEEE
Confidence 999886221 23344 778899999998885
|
|
| >COG1748 LYS9 Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=93.21 E-value=0.29 Score=46.72 Aligned_cols=83 Identities=19% Similarity=0.225 Sum_probs=56.6
Q ss_pred CEEEEEecCCCccHHHHHhhhCC--CcEEEEEeCChHHHHHHHHHHHcCCCeEEEEccCCCCcccccCCCcEeEEEEeCC
Q 021911 145 ARVLYLGAASGTTVSHVSDIVGP--NGVVYAVEFSHRSGRDLVNMAKKRTNVIPIIEDARHPAKYRMLVGMVDVIFSDVA 222 (305)
Q Consensus 145 ~~VLDlG~G~G~~t~~la~~~~~--~~~V~avD~s~~~~~~l~~~a~~~~nI~~~~~D~~~~~~~~~~~~~fD~V~~d~~ 222 (305)
++||-||| |...+.+|..+-. ..+|+..|-|+...+++.+... .++++++.|+.+.+....+...+|+||...|
T Consensus 2 ~~ilviGa--G~Vg~~va~~la~~~d~~V~iAdRs~~~~~~i~~~~~--~~v~~~~vD~~d~~al~~li~~~d~VIn~~p 77 (389)
T COG1748 2 MKILVIGA--GGVGSVVAHKLAQNGDGEVTIADRSKEKCARIAELIG--GKVEALQVDAADVDALVALIKDFDLVINAAP 77 (389)
T ss_pred CcEEEECC--chhHHHHHHHHHhCCCceEEEEeCCHHHHHHHHhhcc--ccceeEEecccChHHHHHHHhcCCEEEEeCC
Confidence 57899999 6666666665422 2599999999743333222221 4799999999888654344566799998888
Q ss_pred ChhHHHHHH
Q 021911 223 QPDQARILA 231 (305)
Q Consensus 223 ~~~~~~~l~ 231 (305)
..-...++.
T Consensus 78 ~~~~~~i~k 86 (389)
T COG1748 78 PFVDLTILK 86 (389)
T ss_pred chhhHHHHH
Confidence 665555554
|
|
| >PF03269 DUF268: Caenorhabditis protein of unknown function, DUF268; InterPro: IPR004951 This family consists of proteins of unknown function found in Caenorhabditis species | Back alignment and domain information |
|---|
Probab=93.01 E-value=0.17 Score=42.10 Aligned_cols=127 Identities=17% Similarity=0.194 Sum_probs=65.0
Q ss_pred CCEEEEEecCCCccHHHHHhhhCCCcEEEEEeCChHHHHHHHHHHHcCCCeEEE-EccCCC-CcccccCCCcEeEEEEeC
Q 021911 144 GARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKRTNVIPI-IEDARH-PAKYRMLVGMVDVIFSDV 221 (305)
Q Consensus 144 g~~VLDlG~G~G~~t~~la~~~~~~~~V~avD~s~~~~~~l~~~a~~~~nI~~~-~~D~~~-~~~~~~~~~~fD~V~~d~ 221 (305)
++++|-+|+-.- +...+|-. ....+|+.||.++- +..+..+ +++..+ ..|+.. +..+ ..+||.+.|-.
T Consensus 2 ~~~g~V~GS~~P-wvEv~aL~-~GA~~iltveyn~L---~i~~~~~--dr~ssi~p~df~~~~~~y---~~~fD~~as~~ 71 (177)
T PF03269_consen 2 GKSGLVVGSMQP-WVEVMALQ-HGAAKILTVEYNKL---EIQEEFR--DRLSSILPVDFAKNWQKY---AGSFDFAASFS 71 (177)
T ss_pred CceEEEEecCCc-hhhHHHHH-cCCceEEEEeeccc---ccCcccc--cccccccHHHHHHHHHHh---hccchhhheec
Confidence 456777776532 33333333 24568999998751 1111111 223222 223322 1122 46889887633
Q ss_pred C-------------Chh-HHHHHHHHHhccCCCCcEEEEEEcccccCCCCchhhhHHHHHHHHHHCCCcEeEEe
Q 021911 222 A-------------QPD-QARILALNASYFLKAGGHFVISIKANCIDSTVPAEAVFQSEVKKLQQDQFKPFEQV 281 (305)
Q Consensus 222 ~-------------~~~-~~~~l~~~a~~~LkpGG~lv~s~~~~~i~~~~~~~~v~~~~~~~l~~~Gf~~~e~~ 281 (305)
+ .|. ..+.+. ++.++|||||.|+++++.-..--.-|..-++....-.+--.||+.+...
T Consensus 72 siEh~GLGRYGDPidp~Gdl~~m~-~i~~vLK~GG~L~l~vPvG~d~i~fNahRiYg~~rL~mm~~gfe~i~tf 144 (177)
T PF03269_consen 72 SIEHFGLGRYGDPIDPIGDLRAMA-KIKCVLKPGGLLFLGVPVGTDAIQFNAHRIYGPIRLAMMFYGFEWIDTF 144 (177)
T ss_pred hhccccccccCCCCCccccHHHHH-HHHHhhccCCeEEEEeecCCcceEEecceeecHhHHHHHhCCcEEEeee
Confidence 3 222 344555 7889999999999998532211111233333333222234677777664
|
|
| >TIGR00497 hsdM type I restriction system adenine methylase (hsdM) | Back alignment and domain information |
|---|
Probab=92.81 E-value=1.3 Score=43.90 Aligned_cols=102 Identities=20% Similarity=0.230 Sum_probs=60.0
Q ss_pred CCCEEEEEecCCCccHHHHHhhhC---CCcEEEEEeCChHHHHHHHHHHHcC--------CCeEEEEccCCCCcccccCC
Q 021911 143 PGARVLYLGAASGTTVSHVSDIVG---PNGVVYAVEFSHRSGRDLVNMAKKR--------TNVIPIIEDARHPAKYRMLV 211 (305)
Q Consensus 143 ~g~~VLDlG~G~G~~t~~la~~~~---~~~~V~avD~s~~~~~~l~~~a~~~--------~nI~~~~~D~~~~~~~~~~~ 211 (305)
|...|.|++||+|.+.......+. ....+|+-|..+.. ...+..+ +.......|-...+.. ...
T Consensus 217 p~~~~~Dp~~Gsg~~L~~~~~~~~~~qe~~~~~gqe~~~~~----~~~a~mnm~l~~~~~~t~~~~~~dtl~~~d~-~~~ 291 (501)
T TIGR00497 217 TVDDVYDMACGSGSLLLQVIKVLGEKTSLVSYYGQEINHTT----YNLCRMNMILHNIDYANFNIINADTLTTKEW-ENE 291 (501)
T ss_pred CCCcccccccchHHHHHHHHHHhcccccceeEEEEeCchHH----HHHHHHHHHHcCCCccccCcccCCcCCCccc-ccc
Confidence 668999999999998876554432 12368889998843 3333321 1222223333221111 113
Q ss_pred CcEeEEEEeCCC---------h------------------hHHHHHHHHHhccCCCCcEEEEEEc
Q 021911 212 GMVDVIFSDVAQ---------P------------------DQARILALNASYFLKAGGHFVISIK 249 (305)
Q Consensus 212 ~~fD~V~~d~~~---------~------------------~~~~~l~~~a~~~LkpGG~lv~s~~ 249 (305)
..||+|++|+|. + ....++..++...|+++|+..+..+
T Consensus 292 ~~~D~v~~NpPf~~~~~~~~~~~~~~~d~~~~~~~l~~~~~~~~afi~h~~~~L~~gG~~aiI~~ 356 (501)
T TIGR00497 292 NGFEVVVSNPPYSISWAGDKKSNLVSDVRFKDAGTLAPNSKADLAFVLHALYVLGQEGTAAIVCF 356 (501)
T ss_pred ccCCEEeecCCcccccccccccccccccchhcccCCCCCchhhHHHHHHHHHhcCCCCeEEEEec
Confidence 469999998871 0 0122333378889999998877764
|
Function: methylation of specific adenine residues; required for both restriction and modification activities. The ECOR124/3 I enzyme recognizes 5'GAA(N7)RTCG. for E.coli see (J. Mol. Biol. 257: 960-969 (1996)). |
| >KOG3924 consensus Putative protein methyltransferase involved in meiosis and transcriptional silencing (Dot1) [Cell cycle control, cell division, chromosome partitioning; Transcription] | Back alignment and domain information |
|---|
Probab=91.57 E-value=0.29 Score=46.35 Aligned_cols=118 Identities=17% Similarity=0.185 Sum_probs=76.4
Q ss_pred HHHHHHHccccccCCCCCCEEEEEecCCCccHHHHHhhhCCCcEEEEEeCChHH---HHH-------HHHHHHcC-CCeE
Q 021911 127 KLAAAVLGGVDNIWIKPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRS---GRD-------LVNMAKKR-TNVI 195 (305)
Q Consensus 127 ~l~a~ll~~l~~~~~~~g~~VLDlG~G~G~~t~~la~~~~~~~~V~avD~s~~~---~~~-------l~~~a~~~-~nI~ 195 (305)
...+++....+++.+.+++.-.|+|+|-|..+..+|...+. ..-+++++++.. ... +.++.-++ ..+.
T Consensus 176 ~~~~ql~si~dEl~~g~~D~F~DLGSGVGqlv~~~aa~a~~-k~svG~eim~~pS~~a~~~~~~~kk~~k~fGk~~~~~~ 254 (419)
T KOG3924|consen 176 TQLEQLRSIVDELKLGPADVFMDLGSGVGQLVCFVAAYAGC-KKSVGFEIMDKPSQCAELNKEEFKKLMKHFGKKPNKIE 254 (419)
T ss_pred hhHHHHHHHHHHhccCCCCcccCCCcccchhhHHHHHhhcc-ccccceeeecCcHHHHHHHHHHHHHHHHHhCCCcCcee
Confidence 34455555566678999999999999999999999987542 345677765311 111 11111122 3478
Q ss_pred EEEccCCCCcccccCCCcEeEEEEeCC--ChhHHHHHHHHHhccCCCCcEEEE
Q 021911 196 PIIEDARHPAKYRMLVGMVDVIFSDVA--QPDQARILALNASYFLKAGGHFVI 246 (305)
Q Consensus 196 ~~~~D~~~~~~~~~~~~~fD~V~~d~~--~~~~~~~l~~~a~~~LkpGG~lv~ 246 (305)
.++.++..+.....+....++|+++.. .|+...-+. ++.+-+|+|=+++-
T Consensus 255 ~i~gsf~~~~~v~eI~~eatvi~vNN~~Fdp~L~lr~~-eil~~ck~gtrIiS 306 (419)
T KOG3924|consen 255 TIHGSFLDPKRVTEIQTEATVIFVNNVAFDPELKLRSK-EILQKCKDGTRIIS 306 (419)
T ss_pred ecccccCCHHHHHHHhhcceEEEEecccCCHHHHHhhH-HHHhhCCCcceEec
Confidence 888998887655555678899998666 344333344 67778888855543
|
|
| >KOG2352 consensus Predicted spermine/spermidine synthase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=91.26 E-value=0.59 Score=45.48 Aligned_cols=100 Identities=23% Similarity=0.261 Sum_probs=65.9
Q ss_pred CCEEEEEecCCCccHHHHHhhhCCCcEEEEEeCChHHHHHHHHHHHcC------CCeEEEEccCCCCc----ccccCCCc
Q 021911 144 GARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKR------TNVIPIIEDARHPA----KYRMLVGM 213 (305)
Q Consensus 144 g~~VLDlG~G~G~~t~~la~~~~~~~~V~avD~s~~~~~~l~~~a~~~------~nI~~~~~D~~~~~----~~~~~~~~ 213 (305)
..++|-+|-|.|.+.+.+-..+ +...+++|+++| .+++.+... ........|..... ........
T Consensus 296 ~~~~lvvg~ggG~l~sfl~~~~-p~~~i~~ve~dP----~~l~va~q~f~f~q~~r~~V~i~dGl~~~~~~~k~~~~~~~ 370 (482)
T KOG2352|consen 296 GGKQLVVGLGGGGLPSFLHMSL-PKFQITAVEIDP----EMLEVATQYFGFMQSDRNKVHIADGLDFLQRTAKSQQEDIC 370 (482)
T ss_pred cCcEEEEecCCCccccceeeec-CccceeEEEECh----hHhhccHhhhchhhhhhhhhhHhhchHHHHHHhhccccccC
Confidence 5678888888899988887776 567999999999 555555443 22333334432221 11113468
Q ss_pred EeEEEEeCC--------Ch---hHHHHHHHHHhccCCCCcEEEEEE
Q 021911 214 VDVIFSDVA--------QP---DQARILALNASYFLKAGGHFVISI 248 (305)
Q Consensus 214 fD~V~~d~~--------~~---~~~~~l~~~a~~~LkpGG~lv~s~ 248 (305)
||+++.|+. || --+..+.+.+...|.|.|.+++-.
T Consensus 371 ~dvl~~dvds~d~~g~~~pp~~fva~~~l~~~k~~l~p~g~f~inl 416 (482)
T KOG2352|consen 371 PDVLMVDVDSKDSHGMQCPPPAFVAQVALQPVKMILPPRGMFIINL 416 (482)
T ss_pred CcEEEEECCCCCcccCcCCchHHHHHHHHHHHhhccCccceEEEEE
Confidence 999998765 22 123333448999999999998865
|
|
| >PF00107 ADH_zinc_N: Zinc-binding dehydrogenase; InterPro: IPR013149 Alcohol dehydrogenase (1 | Back alignment and domain information |
|---|
Probab=91.19 E-value=0.61 Score=36.60 Aligned_cols=84 Identities=23% Similarity=0.232 Sum_probs=52.4
Q ss_pred CccHHHHHhhhCCCcEEEEEeCChHHHHHHHHHHHcCCCeEEEEccCCCCcc-c-ccCC-CcEeEEEEeCCChhHHHHHH
Q 021911 155 GTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKRTNVIPIIEDARHPAK-Y-RMLV-GMVDVIFSDVAQPDQARILA 231 (305)
Q Consensus 155 G~~t~~la~~~~~~~~V~avD~s~~~~~~l~~~a~~~~nI~~~~~D~~~~~~-~-~~~~-~~fD~V~~d~~~~~~~~~l~ 231 (305)
|..+..+|+.++ .+|+++|.++. -++.+++..--.++..+-.++.. . .... ..+|+||-....+.. +.
T Consensus 3 G~~a~q~ak~~G--~~vi~~~~~~~----k~~~~~~~Ga~~~~~~~~~~~~~~i~~~~~~~~~d~vid~~g~~~~---~~ 73 (130)
T PF00107_consen 3 GLMAIQLAKAMG--AKVIATDRSEE----KLELAKELGADHVIDYSDDDFVEQIRELTGGRGVDVVIDCVGSGDT---LQ 73 (130)
T ss_dssp HHHHHHHHHHTT--SEEEEEESSHH----HHHHHHHTTESEEEETTTSSHHHHHHHHTTTSSEEEEEESSSSHHH---HH
T ss_pred HHHHHHHHHHcC--CEEEEEECCHH----HHHHHHhhcccccccccccccccccccccccccceEEEEecCcHHH---HH
Confidence 567888998876 79999999983 44455543211222222221111 1 1112 379999987775443 33
Q ss_pred HHHhccCCCCcEEEEEE
Q 021911 232 LNASYFLKAGGHFVISI 248 (305)
Q Consensus 232 ~~a~~~LkpGG~lv~s~ 248 (305)
.+..+|+++|++++.-
T Consensus 74 -~~~~~l~~~G~~v~vg 89 (130)
T PF00107_consen 74 -EAIKLLRPGGRIVVVG 89 (130)
T ss_dssp -HHHHHEEEEEEEEEES
T ss_pred -HHHHHhccCCEEEEEE
Confidence 6668999999999975
|
1.1.1 from EC) (ADH) catalyzes the reversible oxidation of alcohols to their corresponding acetaldehyde or ketone with the concomitant reduction of NAD: |
| >PRK09424 pntA NAD(P) transhydrogenase subunit alpha; Provisional | Back alignment and domain information |
|---|
Probab=90.79 E-value=1.6 Score=43.34 Aligned_cols=101 Identities=18% Similarity=0.229 Sum_probs=62.1
Q ss_pred CCCCCEEEEEecCC-CccHHHHHhhhCCCcEEEEEeCChHHHHHHHHHHHcCCCeEEEEccCCC-----------Cc-c-
Q 021911 141 IKPGARVLYLGAAS-GTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKRTNVIPIIEDARH-----------PA-K- 206 (305)
Q Consensus 141 ~~~g~~VLDlG~G~-G~~t~~la~~~~~~~~V~avD~s~~~~~~l~~~a~~~~nI~~~~~D~~~-----------~~-~- 206 (305)
..++.+||-+|||+ |..+..+|..++. .|+++|.++.+ ++.+++. ..+++..|..+ .. .
T Consensus 162 ~~pg~kVlViGaG~iGL~Ai~~Ak~lGA--~V~a~D~~~~r----le~aesl-GA~~v~i~~~e~~~~~~gya~~~s~~~ 234 (509)
T PRK09424 162 KVPPAKVLVIGAGVAGLAAIGAAGSLGA--IVRAFDTRPEV----AEQVESM-GAEFLELDFEEEGGSGDGYAKVMSEEF 234 (509)
T ss_pred CcCCCEEEEECCcHHHHHHHHHHHHCCC--EEEEEeCCHHH----HHHHHHc-CCeEEEeccccccccccchhhhcchhH
Confidence 45789999999996 5566677777763 79999999944 4444443 22322222211 00 0
Q ss_pred -------cccCCCcEeEEEEeCCChhH--HHHHHHHHhccCCCCcEEEEEE
Q 021911 207 -------YRMLVGMVDVIFSDVAQPDQ--ARILALNASYFLKAGGHFVISI 248 (305)
Q Consensus 207 -------~~~~~~~fD~V~~d~~~~~~--~~~l~~~a~~~LkpGG~lv~s~ 248 (305)
+......+|+||.....|.. ..++...+.+.+||||.++...
T Consensus 235 ~~~~~~~~~~~~~gaDVVIetag~pg~~aP~lit~~~v~~mkpGgvIVdvg 285 (509)
T PRK09424 235 IKAEMALFAEQAKEVDIIITTALIPGKPAPKLITAEMVASMKPGSVIVDLA 285 (509)
T ss_pred HHHHHHHHHhccCCCCEEEECCCCCcccCcchHHHHHHHhcCCCCEEEEEc
Confidence 00001469999987765431 2333237889999999988754
|
|
| >PRK05786 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=90.68 E-value=3 Score=36.07 Aligned_cols=78 Identities=14% Similarity=0.152 Sum_probs=50.8
Q ss_pred CCEEEEEecCCCccHHHHHhhh-CCCcEEEEEeCChHHHHHHHHHHHcCCCeEEEEccCCCCccccc-------CCCcEe
Q 021911 144 GARVLYLGAASGTTVSHVSDIV-GPNGVVYAVEFSHRSGRDLVNMAKKRTNVIPIIEDARHPAKYRM-------LVGMVD 215 (305)
Q Consensus 144 g~~VLDlG~G~G~~t~~la~~~-~~~~~V~avD~s~~~~~~l~~~a~~~~nI~~~~~D~~~~~~~~~-------~~~~fD 215 (305)
+.+||-.|+. |....++++.+ ....+|+.++-++.....+.+......+++++.+|+.+...... ....+|
T Consensus 5 ~~~vlItGa~-g~iG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~~~id 83 (238)
T PRK05786 5 GKKVAIIGVS-EGLGYAVAYFALKEGAQVCINSRNENKLKRMKKTLSKYGNIHYVVGDVSSTESARNVIEKAAKVLNAID 83 (238)
T ss_pred CcEEEEECCC-chHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCeEEEECCCCCHHHHHHHHHHHHHHhCCCC
Confidence 5789999875 66777777654 23458999998876555444444333478899999987643210 124578
Q ss_pred EEEEeCC
Q 021911 216 VIFSDVA 222 (305)
Q Consensus 216 ~V~~d~~ 222 (305)
.|+.+..
T Consensus 84 ~ii~~ag 90 (238)
T PRK05786 84 GLVVTVG 90 (238)
T ss_pred EEEEcCC
Confidence 8887664
|
|
| >PF03686 UPF0146: Uncharacterised protein family (UPF0146); InterPro: IPR005353 The function of this family of proteins is unknown | Back alignment and domain information |
|---|
Probab=90.51 E-value=0.92 Score=36.25 Aligned_cols=89 Identities=20% Similarity=0.194 Sum_probs=46.0
Q ss_pred CCCEEEEEecCCCccHHHHHhhhCCCcEEEEEeCChHHHHHHHHHHHcCCCeEEEEccCCCCcccccCCCcEeEEEEe-C
Q 021911 143 PGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKRTNVIPIIEDARHPAKYRMLVGMVDVIFSD-V 221 (305)
Q Consensus 143 ~g~~VLDlG~G~G~~t~~la~~~~~~~~V~avD~s~~~~~~l~~~a~~~~nI~~~~~D~~~~~~~~~~~~~fD~V~~d-~ 221 (305)
...+|+|+|.|.=..+.......+ ..|+++|+.+. .+. ..+.++.-|++++... +-...|+|.+- +
T Consensus 13 ~~~kiVEVGiG~~~~vA~~L~~~G--~dV~~tDi~~~-------~a~--~g~~~v~DDif~P~l~--iY~~a~lIYSiRP 79 (127)
T PF03686_consen 13 NYGKIVEVGIGFNPEVAKKLKERG--FDVIATDINPR-------KAP--EGVNFVVDDIFNPNLE--IYEGADLIYSIRP 79 (127)
T ss_dssp -SSEEEEET-TT--HHHHHHHHHS---EEEEE-SS-S-------------STTEE---SSS--HH--HHTTEEEEEEES-
T ss_pred CCCcEEEECcCCCHHHHHHHHHcC--CcEEEEECccc-------ccc--cCcceeeecccCCCHH--HhcCCcEEEEeCC
Confidence 345999999987665554444433 68999999983 222 5788999999987532 23689999984 4
Q ss_pred CChhHHHHHHHHHhccCCCCcEEEEEE
Q 021911 222 AQPDQARILALNASYFLKAGGHFVISI 248 (305)
Q Consensus 222 ~~~~~~~~l~~~a~~~LkpGG~lv~s~ 248 (305)
|...|..++. +++.+ +.-|++.+
T Consensus 80 P~El~~~il~--lA~~v--~adlii~p 102 (127)
T PF03686_consen 80 PPELQPPILE--LAKKV--GADLIIRP 102 (127)
T ss_dssp -TTSHHHHHH--HHHHH--T-EEEEE-
T ss_pred ChHHhHHHHH--HHHHh--CCCEEEEC
Confidence 4555555554 33333 33466654
|
; PDB: 2K4M_A. |
| >PLN02668 indole-3-acetate carboxyl methyltransferase | Back alignment and domain information |
|---|
Probab=90.38 E-value=7.3 Score=37.28 Aligned_cols=20 Identities=30% Similarity=0.471 Sum_probs=16.3
Q ss_pred CCEEEEEecCCCccHHHHHh
Q 021911 144 GARVLYLGAASGTTVSHVSD 163 (305)
Q Consensus 144 g~~VLDlG~G~G~~t~~la~ 163 (305)
...|+|+||++|..++.+..
T Consensus 64 ~~~iaDlGcs~G~ntl~~vs 83 (386)
T PLN02668 64 PFTAVDLGCSSGSNTIHIID 83 (386)
T ss_pred ceeEEEecCCCCccHHHHHH
Confidence 56899999999988866543
|
|
| >COG3510 CmcI Cephalosporin hydroxylase [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=90.29 E-value=3.5 Score=35.54 Aligned_cols=103 Identities=19% Similarity=0.260 Sum_probs=65.4
Q ss_pred CCCCCEEEEEecCCCccHHHHHhhh---CCCcEEEEEeCChHHHHHHHHHHHcCCCeEEEEccCCCCccc---ccCCCcE
Q 021911 141 IKPGARVLYLGAASGTTVSHVSDIV---GPNGVVYAVEFSHRSGRDLVNMAKKRTNVIPIIEDARHPAKY---RMLVGMV 214 (305)
Q Consensus 141 ~~~g~~VLDlG~G~G~~t~~la~~~---~~~~~V~avD~s~~~~~~l~~~a~~~~nI~~~~~D~~~~~~~---~~~~~~f 214 (305)
++| +.|+++|...|..++..|+.+ +...+|+++|++.+. +-..+.+.+.|.++..+-+++.-. +.+..-+
T Consensus 68 ~~P-~lvIE~Gs~~GGSal~fA~~m~s~Gq~~kvl~vdIdi~~---~~p~a~e~p~i~f~egss~dpai~eqi~~~~~~y 143 (237)
T COG3510 68 LQP-SLVIEFGSRHGGSALFFANMMISIGQPFKVLGVDIDIKP---LDPAAREVPDILFIEGSSTDPAIAEQIRRLKNEY 143 (237)
T ss_pred cCC-ceeEeeccccCchhhhhhHhHHhcCCCceEEEEecccCc---CChhhhcCCCeEEEeCCCCCHHHHHHHHHHhcCC
Confidence 344 789999999999999888764 334689999998621 222333358999999998877421 1111212
Q ss_pred eE--EEEeCCCh--hHHHHHHHHHhccCCCCcEEEEEE
Q 021911 215 DV--IFSDVAQP--DQARILALNASYFLKAGGHFVISI 248 (305)
Q Consensus 215 D~--V~~d~~~~--~~~~~l~~~a~~~LkpGG~lv~s~ 248 (305)
-- |+.|..+. .-...|. ....+|..|-++++..
T Consensus 144 ~kIfvilDsdHs~~hvLAel~-~~~pllsaG~Y~vVeD 180 (237)
T COG3510 144 PKIFVILDSDHSMEHVLAELK-LLAPLLSAGDYLVVED 180 (237)
T ss_pred CcEEEEecCCchHHHHHHHHH-HhhhHhhcCceEEEec
Confidence 23 33444432 2223333 4567888998988875
|
|
| >cd05188 MDR Medium chain reductase/dehydrogenase (MDR)/zinc-dependent alcohol dehydrogenase-like family | Back alignment and domain information |
|---|
Probab=90.25 E-value=2.9 Score=36.55 Aligned_cols=96 Identities=29% Similarity=0.374 Sum_probs=57.0
Q ss_pred CCCCCEEEEEecCC-CccHHHHHhhhCCCcEEEEEeCChHHHHHHHHHHHcCCCeEEEEccCCCCccc----ccCCCcEe
Q 021911 141 IKPGARVLYLGAAS-GTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKRTNVIPIIEDARHPAKY----RMLVGMVD 215 (305)
Q Consensus 141 ~~~g~~VLDlG~G~-G~~t~~la~~~~~~~~V~avD~s~~~~~~l~~~a~~~~nI~~~~~D~~~~~~~----~~~~~~fD 215 (305)
+.++.+||..|+++ |..+..++...+ .+|++++.++... +.+++.....++ |....... ......+|
T Consensus 132 ~~~~~~vli~g~~~~G~~~~~~a~~~g--~~v~~~~~~~~~~----~~~~~~g~~~~~--~~~~~~~~~~~~~~~~~~~d 203 (271)
T cd05188 132 LKPGDTVLVLGAGGVGLLAAQLAKAAG--ARVIVTDRSDEKL----ELAKELGADHVI--DYKEEDLEEELRLTGGGGAD 203 (271)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcC--CeEEEEcCCHHHH----HHHHHhCCceec--cCCcCCHHHHHHHhcCCCCC
Confidence 37789999999886 556666676654 5899999987432 233222111111 21111100 01135799
Q ss_pred EEEEeCCChhHHHHHHHHHhccCCCCcEEEEEE
Q 021911 216 VIFSDVAQPDQARILALNASYFLKAGGHFVISI 248 (305)
Q Consensus 216 ~V~~d~~~~~~~~~l~~~a~~~LkpGG~lv~s~ 248 (305)
+|+.....+. .+. .+.+.|+++|+++...
T Consensus 204 ~vi~~~~~~~---~~~-~~~~~l~~~G~~v~~~ 232 (271)
T cd05188 204 VVIDAVGGPE---TLA-QALRLLRPGGRIVVVG 232 (271)
T ss_pred EEEECCCCHH---HHH-HHHHhcccCCEEEEEc
Confidence 9997766532 233 5567899999998764
|
The medium chain reductase/dehydrogenases (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH) , quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydro |
| >PF02636 Methyltransf_28: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR003788 This entry describes proteins of unknown function | Back alignment and domain information |
|---|
Probab=90.24 E-value=0.33 Score=43.45 Aligned_cols=53 Identities=17% Similarity=0.048 Sum_probs=34.2
Q ss_pred HHHHHccccccC-CCCCCEEEEEecCCCccHHHHHhhhCCC-------cEEEEEeCChHHH
Q 021911 129 AAAVLGGVDNIW-IKPGARVLYLGAASGTTVSHVSDIVGPN-------GVVYAVEFSHRSG 181 (305)
Q Consensus 129 ~a~ll~~l~~~~-~~~g~~VLDlG~G~G~~t~~la~~~~~~-------~~V~avD~s~~~~ 181 (305)
+..++..++.+. +...-+|+|+|+|+|.++..+++.+... .+++-||+|+...
T Consensus 3 a~~~~~~~~~~~~p~~~~~ivE~GaG~G~La~diL~~l~~~~p~~~~~~~y~ivE~Sp~L~ 63 (252)
T PF02636_consen 3 ARWIAQMWEQLGRPSEPLRIVEIGAGRGTLARDILRYLRKFSPEVYKRLRYHIVEISPYLR 63 (252)
T ss_dssp HHHHHHHHHHCT--SS-EEEEEES-TTSHHHHHHHHHHCCTTHHHHTTCEEEEE-TTCCCH
T ss_pred HHHHHHHHHHcCCCCcCcEEEEECCCchHHHHHHHHHHHHhChhhhhcceEEEEcCCHHHH
Confidence 334444344332 2224799999999999999999877532 4899999998443
|
; PDB: 4F3N_A 1ZKD_B. |
| >cd08254 hydroxyacyl_CoA_DH 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase, N-benzyl-3-pyrrolidinol dehydrogenase, and other MDR family members | Back alignment and domain information |
|---|
Probab=90.01 E-value=2.7 Score=38.40 Aligned_cols=98 Identities=27% Similarity=0.395 Sum_probs=57.4
Q ss_pred CCCCCCEEEEEecC-CCccHHHHHhhhCCCcEEEEEeCChHHHHHHHHHHHcCCCeEEEEccCCCCcc---cccCCCcEe
Q 021911 140 WIKPGARVLYLGAA-SGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKRTNVIPIIEDARHPAK---YRMLVGMVD 215 (305)
Q Consensus 140 ~~~~g~~VLDlG~G-~G~~t~~la~~~~~~~~V~avD~s~~~~~~l~~~a~~~~nI~~~~~D~~~~~~---~~~~~~~fD 215 (305)
.+.++.+||..++| .|..+.++|...+ .+|++++.++.. .+.+++. .+..+..+-..... .......+|
T Consensus 162 ~~~~~~~vli~g~g~vG~~~~~la~~~G--~~V~~~~~s~~~----~~~~~~~-g~~~~~~~~~~~~~~~~~~~~~~~~D 234 (338)
T cd08254 162 EVKPGETVLVIGLGGLGLNAVQIAKAMG--AAVIAVDIKEEK----LELAKEL-GADEVLNSLDDSPKDKKAAGLGGGFD 234 (338)
T ss_pred CCCCCCEEEEECCcHHHHHHHHHHHHcC--CEEEEEcCCHHH----HHHHHHh-CCCEEEcCCCcCHHHHHHHhcCCCce
Confidence 46778899998765 3567777777754 579999998843 3333322 12222211111100 011234799
Q ss_pred EEEEeCCChhHHHHHHHHHhccCCCCcEEEEEE
Q 021911 216 VIFSDVAQPDQARILALNASYFLKAGGHFVISI 248 (305)
Q Consensus 216 ~V~~d~~~~~~~~~l~~~a~~~LkpGG~lv~s~ 248 (305)
+|+...... ..+. .+.+.|+++|+++...
T Consensus 235 ~vid~~g~~---~~~~-~~~~~l~~~G~~v~~g 263 (338)
T cd08254 235 VIFDFVGTQ---PTFE-DAQKAVKPGGRIVVVG 263 (338)
T ss_pred EEEECCCCH---HHHH-HHHHHhhcCCEEEEEC
Confidence 888654432 2344 6778999999998753
|
This group contains enzymes of the zinc-dependent alcohol dehydrogenase family, including members (aka MDR) identified as 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase and N-benzyl-3-pyrrolidinol dehydrogenase. 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase catalyzes the conversion of 6-Hydroxycyclohex-1-enecarbonyl-CoA and NAD+ to 6-Ketoxycyclohex-1-ene-1-carboxyl-CoA,NADH, and H+. This group displays the characteristic catalytic and structural zinc sites of the zinc-dependent alcohol dehydrogenases. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentatio |
| >PF07279 DUF1442: Protein of unknown function (DUF1442); InterPro: IPR009902 This family consists of several hypothetical Arabidopsis thaliana proteins of around 225 residues in length | Back alignment and domain information |
|---|
Probab=89.93 E-value=6.7 Score=34.33 Aligned_cols=112 Identities=16% Similarity=0.166 Sum_probs=65.8
Q ss_pred hhHHHHHHHccccccCCCCCCEEEEEecCCCc--cHHHHHhhh-CCCcEEEEEeCChHHHHHHHHHHHcC---CCeEEEE
Q 021911 125 RSKLAAAVLGGVDNIWIKPGARVLYLGAASGT--TVSHVSDIV-GPNGVVYAVEFSHRSGRDLVNMAKKR---TNVIPII 198 (305)
Q Consensus 125 ~s~l~a~ll~~l~~~~~~~g~~VLDlG~G~G~--~t~~la~~~-~~~~~V~avD~s~~~~~~l~~~a~~~---~nI~~~~ 198 (305)
...+.+.|..+ .....+++++|.-+. +++.||-.. ...+++++|-.+++...+..+..... +-++|++
T Consensus 29 ~aEfISAlAAG------~nAkliVe~~s~g~~~~ttiaLaaAAr~TgGR~vCIvp~~~~~~~~~~~l~~~~~~~~vEfvv 102 (218)
T PF07279_consen 29 VAEFISALAAG------WNAKLIVEAWSSGGAISTTIALAAAARQTGGRHVCIVPDEQSLSEYKKALGEAGLSDVVEFVV 102 (218)
T ss_pred HHHHHHHHhcc------ccceEEEEEecCCCchHhHHHHHHHHHhcCCeEEEEcCChhhHHHHHHHHhhccccccceEEe
Confidence 55566666532 234678888766443 344443221 24578999977765544444443322 3468888
Q ss_pred ccCCC-CcccccCCCcEeEEEEeCCChhHH-HHHHHHHhccCCCCcEEEEEE
Q 021911 199 EDARH-PAKYRMLVGMVDVIFSDVAQPDQA-RILALNASYFLKAGGHFVISI 248 (305)
Q Consensus 199 ~D~~~-~~~~~~~~~~fD~V~~d~~~~~~~-~~l~~~a~~~LkpGG~lv~s~ 248 (305)
.|... ..+ ....+|.++.|--..+.. ++|. +.+ |.|.|-+++..
T Consensus 103 g~~~e~~~~---~~~~iDF~vVDc~~~d~~~~vl~--~~~-~~~~GaVVV~~ 148 (218)
T PF07279_consen 103 GEAPEEVMP---GLKGIDFVVVDCKREDFAARVLR--AAK-LSPRGAVVVCY 148 (218)
T ss_pred cCCHHHHHh---hccCCCEEEEeCCchhHHHHHHH--Hhc-cCCCceEEEEe
Confidence 77532 221 135799999998877777 5554 344 66667766654
|
The function of this family is unknown. |
| >KOG2920 consensus Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=89.77 E-value=0.22 Score=45.19 Aligned_cols=127 Identities=20% Similarity=0.162 Sum_probs=66.7
Q ss_pred eeeeecCchhhHHHHHHHccc-cccCCCCCCEEEEEecCCCccHHHHHhhhCCCcEEEEEeCChHHHHHH------H-HH
Q 021911 116 VEYRIWNPFRSKLAAAVLGGV-DNIWIKPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDL------V-NM 187 (305)
Q Consensus 116 ~~~~~~~~~~s~l~a~ll~~l-~~~~~~~g~~VLDlG~G~G~~t~~la~~~~~~~~V~avD~s~~~~~~l------~-~~ 187 (305)
..+..|.+. ..+...+...+ ++ -.-.+++|||+|||++.....+... ....|+..|++...++.. + ..
T Consensus 90 Gg~k~wecS-~dl~~~l~~e~~~~-~~~~~k~vLELgCg~~Lp~i~~~~~--~~~~~~fqD~na~vl~~~t~pn~~~~~~ 165 (282)
T KOG2920|consen 90 GGLKLWECS-VDLLPYLKEEIGAQ-MSFSGKRVLELGCGAALPGIFAFVK--GAVSVHFQDFNAEVLRLVTLPNILVNSH 165 (282)
T ss_pred cceEEeecH-HHHHHHHHHHhhhh-eEecCceeEecCCcccccchhhhhh--ccceeeeEecchhheeeecccceecchh
Confidence 366777763 33444443222 11 1345789999999999888877765 345788888887332100 0 00
Q ss_pred HH--cCCC---eEEEEc---cCCCCcccccCCCcEeEEEEeCC---ChhHHHHHHHHHhccCCCCcEEEEEEc
Q 021911 188 AK--KRTN---VIPIIE---DARHPAKYRMLVGMVDVIFSDVA---QPDQARILALNASYFLKAGGHFVISIK 249 (305)
Q Consensus 188 a~--~~~n---I~~~~~---D~~~~~~~~~~~~~fD~V~~d~~---~~~~~~~l~~~a~~~LkpGG~lv~s~~ 249 (305)
+. ...+ +..... |....... .-.||+|++.-. ...|..+..+....+++++|.+++.-+
T Consensus 166 ~~~~~~e~~~~~~i~~s~l~dg~~~~t~---~~~ydlIlsSetiy~~~~~~~~~~~~r~~l~~~D~~~~~aAK 235 (282)
T KOG2920|consen 166 AGVEEKENHKVDEILNSLLSDGVFNHTE---RTHYDLILSSETIYSIDSLAVLYLLHRPCLLKTDGVFYVAAK 235 (282)
T ss_pred hhhhhhhcccceeccccccccchhhhcc---ccchhhhhhhhhhhCcchhhhhHhhhhhhcCCccchhhhhhH
Confidence 00 0000 111111 21100000 026788876443 333444424467788999998888653
|
|
| >cd08230 glucose_DH Glucose dehydrogenase | Back alignment and domain information |
|---|
Probab=89.47 E-value=2.4 Score=39.57 Aligned_cols=94 Identities=19% Similarity=0.230 Sum_probs=54.2
Q ss_pred CCCCCEEEEEecCC-CccHHHHHhhhCCCcEEEEEeC---ChHHHHHHHHHHHcCCCeEEEEccCCCCccc-ccCCCcEe
Q 021911 141 IKPGARVLYLGAAS-GTTVSHVSDIVGPNGVVYAVEF---SHRSGRDLVNMAKKRTNVIPIIEDARHPAKY-RMLVGMVD 215 (305)
Q Consensus 141 ~~~g~~VLDlG~G~-G~~t~~la~~~~~~~~V~avD~---s~~~~~~l~~~a~~~~nI~~~~~D~~~~~~~-~~~~~~fD 215 (305)
+.++.+||-+|+|+ |..+..+|+..+ .+|++++. ++. -++.+++. .+..+ |..+.... ......+|
T Consensus 170 ~~~g~~vlI~G~G~vG~~a~q~ak~~G--~~vi~~~~~~~~~~----~~~~~~~~-Ga~~v--~~~~~~~~~~~~~~~~d 240 (355)
T cd08230 170 TWNPRRALVLGAGPIGLLAALLLRLRG--FEVYVLNRRDPPDP----KADIVEEL-GATYV--NSSKTPVAEVKLVGEFD 240 (355)
T ss_pred cCCCCEEEEECCCHHHHHHHHHHHHcC--CeEEEEecCCCCHH----HHHHHHHc-CCEEe--cCCccchhhhhhcCCCC
Confidence 46789999998753 445566667654 37999986 452 23333332 22222 21111000 01124689
Q ss_pred EEEEeCCChhHHHHHHHHHhccCCCCcEEEEE
Q 021911 216 VIFSDVAQPDQARILALNASYFLKAGGHFVIS 247 (305)
Q Consensus 216 ~V~~d~~~~~~~~~l~~~a~~~LkpGG~lv~s 247 (305)
+||-....+. .+. .+.+.|+++|++++.
T Consensus 241 ~vid~~g~~~---~~~-~~~~~l~~~G~~v~~ 268 (355)
T cd08230 241 LIIEATGVPP---LAF-EALPALAPNGVVILF 268 (355)
T ss_pred EEEECcCCHH---HHH-HHHHHccCCcEEEEE
Confidence 9987665443 333 667899999998764
|
Glucose dehydrogenase (GlcDH), a member of the medium chain dehydrogenase/zinc-dependent alcohol dehydrogenase-like family, catalyzes the NADP(+)-dependent oxidation of glucose to gluconate, the first step in the Entner-Doudoroff pathway, an alternative to or substitute for glycolysis or the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossman fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contai |
| >PRK10669 putative cation:proton antiport protein; Provisional | Back alignment and domain information |
|---|
Probab=89.34 E-value=3.2 Score=41.60 Aligned_cols=96 Identities=9% Similarity=0.073 Sum_probs=62.6
Q ss_pred CEEEEEecCCCccHHHHHhhhCC-CcEEEEEeCChHHHHHHHHHHHcCCCeEEEEccCCCCcccc-cCCCcEeEEEEeCC
Q 021911 145 ARVLYLGAASGTTVSHVSDIVGP-NGVVYAVEFSHRSGRDLVNMAKKRTNVIPIIEDARHPAKYR-MLVGMVDVIFSDVA 222 (305)
Q Consensus 145 ~~VLDlG~G~G~~t~~la~~~~~-~~~V~avD~s~~~~~~l~~~a~~~~nI~~~~~D~~~~~~~~-~~~~~fD~V~~d~~ 222 (305)
.+|+= ||.|..+.++++.+.. ...|+.+|.++ +..+.+++ .....+++|+++..... ...+.+|.|++..+
T Consensus 418 ~hiiI--~G~G~~G~~la~~L~~~g~~vvvId~d~----~~~~~~~~-~g~~~i~GD~~~~~~L~~a~i~~a~~viv~~~ 490 (558)
T PRK10669 418 NHALL--VGYGRVGSLLGEKLLAAGIPLVVIETSR----TRVDELRE-RGIRAVLGNAANEEIMQLAHLDCARWLLLTIP 490 (558)
T ss_pred CCEEE--ECCChHHHHHHHHHHHCCCCEEEEECCH----HHHHHHHH-CCCeEEEcCCCCHHHHHhcCccccCEEEEEcC
Confidence 45555 4556788889987643 34799999999 44444544 46889999999875432 12468898888777
Q ss_pred ChhHHHHHHHHHhccCCCCcEEEEEE
Q 021911 223 QPDQARILALNASYFLKAGGHFVISI 248 (305)
Q Consensus 223 ~~~~~~~l~~~a~~~LkpGG~lv~s~ 248 (305)
..+....+...+ +.+.|.-+++...
T Consensus 491 ~~~~~~~iv~~~-~~~~~~~~iiar~ 515 (558)
T PRK10669 491 NGYEAGEIVASA-REKRPDIEIIARA 515 (558)
T ss_pred ChHHHHHHHHHH-HHHCCCCeEEEEE
Confidence 655544343243 4456766666544
|
|
| >KOG4058 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=89.18 E-value=1.3 Score=36.47 Aligned_cols=63 Identities=14% Similarity=0.019 Sum_probs=41.0
Q ss_pred CCCCCCEEEEEecCCCccHHHHHhhhCCCcEEEEEeCChHHHHHHHHHHHcC----CCeEEEEccCCCCc
Q 021911 140 WIKPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKR----TNVIPIIEDARHPA 205 (305)
Q Consensus 140 ~~~~g~~VLDlG~G~G~~t~~la~~~~~~~~V~avD~s~~~~~~l~~~a~~~----~nI~~~~~D~~~~~ 205 (305)
.-.+..+.+|||+|.|..+...++.. ....++||+++..+.... ...-+ ....|.--|+...+
T Consensus 69 ~~n~~GklvDlGSGDGRiVlaaar~g--~~~a~GvELNpwLVaysr-l~a~R~g~~k~trf~RkdlwK~d 135 (199)
T KOG4058|consen 69 RGNPKGKLVDLGSGDGRIVLAAARCG--LRPAVGVELNPWLVAYSR-LHAWRAGCAKSTRFRRKDLWKVD 135 (199)
T ss_pred cCCCCCcEEeccCCCceeehhhhhhC--CCcCCceeccHHHHHHHH-HHHHHHhcccchhhhhhhhhhcc
Confidence 34566799999999999999988872 346789999984432211 11111 34556666665443
|
|
| >KOG1501 consensus Arginine N-methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=89.13 E-value=0.7 Score=44.48 Aligned_cols=55 Identities=16% Similarity=0.056 Sum_probs=41.9
Q ss_pred CEEEEEecCCCccHHHHHhhhCCCcEEEEEeCChHHHHHHHHHHHcC---CCeEEEEccC
Q 021911 145 ARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKR---TNVIPIIEDA 201 (305)
Q Consensus 145 ~~VLDlG~G~G~~t~~la~~~~~~~~V~avD~s~~~~~~l~~~a~~~---~nI~~~~~D~ 201 (305)
-.|||+|+|+|.++...+... .-.|+|+|+-.+++.-+.+...++ ++|.+|..-.
T Consensus 68 v~vLdigtGTGLLSmMAvrag--aD~vtA~EvfkPM~d~arkI~~kng~SdkI~vInkrS 125 (636)
T KOG1501|consen 68 VFVLDIGTGTGLLSMMAVRAG--ADSVTACEVFKPMVDLARKIMHKNGMSDKINVINKRS 125 (636)
T ss_pred EEEEEccCCccHHHHHHHHhc--CCeEEeehhhchHHHHHHHHHhcCCCccceeeecccc
Confidence 469999999998888877763 347999999987777777777666 5677665433
|
|
| >COG3129 Predicted SAM-dependent methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=88.71 E-value=1.5 Score=38.94 Aligned_cols=85 Identities=11% Similarity=-0.027 Sum_probs=47.2
Q ss_pred CCCCEEEEEecCCCccHHHHHhhhCCCcEEEEEeCChHHHHHHHHHHHcCC----CeEEEEc-cCCCCccc-ccCCCcEe
Q 021911 142 KPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKRT----NVIPIIE-DARHPAKY-RMLVGMVD 215 (305)
Q Consensus 142 ~~g~~VLDlG~G~G~~t~~la~~~~~~~~V~avD~s~~~~~~l~~~a~~~~----nI~~~~~-D~~~~~~~-~~~~~~fD 215 (305)
.++.++||+|.|.-..--.+-.+. -....++.|+++.++..+..+...++ .|+.... |-....+. --..+.||
T Consensus 77 ~~~i~~LDIGvGAnCIYPliG~~e-YgwrfvGseid~~sl~sA~~ii~~N~~l~~~I~lr~qk~~~~if~giig~nE~yd 155 (292)
T COG3129 77 GKNIRILDIGVGANCIYPLIGVHE-YGWRFVGSEIDSQSLSSAKAIISANPGLERAIRLRRQKDSDAIFNGIIGKNERYD 155 (292)
T ss_pred cCceEEEeeccCccccccccccee-ecceeecCccCHHHHHHHHHHHHcCcchhhheeEEeccCccccccccccccceee
Confidence 467799999887533221111110 12367788999977766665555553 3444432 22111111 01246899
Q ss_pred EEEEeCCChhHH
Q 021911 216 VIFSDVAQPDQA 227 (305)
Q Consensus 216 ~V~~d~~~~~~~ 227 (305)
+++||+|..+..
T Consensus 156 ~tlCNPPFh~s~ 167 (292)
T COG3129 156 ATLCNPPFHDSA 167 (292)
T ss_pred eEecCCCcchhH
Confidence 999999954433
|
|
| >TIGR02822 adh_fam_2 zinc-binding alcohol dehydrogenase family protein | Back alignment and domain information |
|---|
Probab=88.59 E-value=3.2 Score=38.46 Aligned_cols=92 Identities=16% Similarity=0.143 Sum_probs=54.4
Q ss_pred cCCCCCCEEEEEecC-CCccHHHHHhhhCCCcEEEEEeCChHHHHHHHHHHHcCCCeEEEEccCCCCcccccCCCcEeEE
Q 021911 139 IWIKPGARVLYLGAA-SGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKRTNVIPIIEDARHPAKYRMLVGMVDVI 217 (305)
Q Consensus 139 ~~~~~g~~VLDlG~G-~G~~t~~la~~~~~~~~V~avD~s~~~~~~l~~~a~~~~nI~~~~~D~~~~~~~~~~~~~fD~V 217 (305)
..++++.+||-.|+| .|..+..+|+..+ .+|++++.++.. ++.+++.. ...+ .|..+.. ...+|++
T Consensus 161 ~~~~~g~~VlV~G~g~iG~~a~~~a~~~G--~~vi~~~~~~~~----~~~a~~~G-a~~v-i~~~~~~-----~~~~d~~ 227 (329)
T TIGR02822 161 ASLPPGGRLGLYGFGGSAHLTAQVALAQG--ATVHVMTRGAAA----RRLALALG-AASA-GGAYDTP-----PEPLDAA 227 (329)
T ss_pred cCCCCCCEEEEEcCCHHHHHHHHHHHHCC--CeEEEEeCChHH----HHHHHHhC-Ccee-ccccccC-----cccceEE
Confidence 367889999999874 2334455666654 479999998843 34444431 1111 1111111 2357876
Q ss_pred EEeCCChhHHHHHHHHHhccCCCCcEEEEE
Q 021911 218 FSDVAQPDQARILALNASYFLKAGGHFVIS 247 (305)
Q Consensus 218 ~~d~~~~~~~~~l~~~a~~~LkpGG~lv~s 247 (305)
+.....+ ..+. .+.+.|+++|++++.
T Consensus 228 i~~~~~~---~~~~-~~~~~l~~~G~~v~~ 253 (329)
T TIGR02822 228 ILFAPAG---GLVP-PALEALDRGGVLAVA 253 (329)
T ss_pred EECCCcH---HHHH-HHHHhhCCCcEEEEE
Confidence 6533333 2455 777899999999874
|
Members of this model form a distinct subset of the larger family of oxidoreductases that includes zinc-binding alcohol dehydrogenases and NADPH:quinone reductases (pfam00107). The gene neighborhood of members of this family is not conserved and it appears that no members are characterized. The sequence of the family includes 6 invariant cysteine residues and one invariant histidine. It appears that no member is characterized. |
| >COG1565 Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=88.29 E-value=1.2 Score=42.01 Aligned_cols=54 Identities=22% Similarity=0.184 Sum_probs=39.9
Q ss_pred HHHHHHHccccccCCCCCCEEEEEecCCCccHHHHHhhh---CC----CcEEEEEeCChHH
Q 021911 127 KLAAAVLGGVDNIWIKPGARVLYLGAASGTTVSHVSDIV---GP----NGVVYAVEFSHRS 180 (305)
Q Consensus 127 ~l~a~ll~~l~~~~~~~g~~VLDlG~G~G~~t~~la~~~---~~----~~~V~avD~s~~~ 180 (305)
.++..++..++++..+..-.++|+|+|.|.+...++..+ .| ..+++-||+|++-
T Consensus 61 lla~~~~~~wq~~g~p~~~~lvEiGaG~G~l~~DiL~~l~~L~P~~~~~~~~~iiE~s~~L 121 (370)
T COG1565 61 LLAEQFLQLWQELGRPAPLKLVEIGAGRGTLASDILRTLRRLYPELYEALSYYIIEPSPEL 121 (370)
T ss_pred HHHHHHHHHHHHhcCCCCceEEEeCCCcChHHHHHHHHHHHhCHHHHhcceEEEEecCHHH
Confidence 445555566666555556789999999999999988765 22 4588999999844
|
|
| >COG1063 Tdh Threonine dehydrogenase and related Zn-dependent dehydrogenases [Amino acid transport and metabolism / General function prediction only] | Back alignment and domain information |
|---|
Probab=88.27 E-value=1.4 Score=41.46 Aligned_cols=98 Identities=23% Similarity=0.374 Sum_probs=59.6
Q ss_pred CCCCEEEEEecCC-CccHHHHHhhhCCCcEEEEEeCChHHHHHHHHHHHcCCCeEEEEccCC-CCc--ccccC-CCcEeE
Q 021911 142 KPGARVLYLGAAS-GTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKRTNVIPIIEDAR-HPA--KYRML-VGMVDV 216 (305)
Q Consensus 142 ~~g~~VLDlG~G~-G~~t~~la~~~~~~~~V~avD~s~~~~~~l~~~a~~~~nI~~~~~D~~-~~~--~~~~~-~~~fD~ 216 (305)
.++.+|+=+|||+ |.++..+++.++ ..+|+++|.++ +-++.|++.-....+.-... ... ..... ...+|+
T Consensus 167 ~~~~~V~V~GaGpIGLla~~~a~~~G-a~~Viv~d~~~----~Rl~~A~~~~g~~~~~~~~~~~~~~~~~~~t~g~g~D~ 241 (350)
T COG1063 167 RPGGTVVVVGAGPIGLLAIALAKLLG-ASVVIVVDRSP----ERLELAKEAGGADVVVNPSEDDAGAEILELTGGRGADV 241 (350)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcC-CceEEEeCCCH----HHHHHHHHhCCCeEeecCccccHHHHHHHHhCCCCCCE
Confidence 4455999999997 555667777764 56899999999 44555555311111111111 100 00011 136999
Q ss_pred EEEeCCChhHHHHHHHHHhccCCCCcEEEEEE
Q 021911 217 IFSDVAQPDQARILALNASYFLKAGGHFVISI 248 (305)
Q Consensus 217 V~~d~~~~~~~~~l~~~a~~~LkpGG~lv~s~ 248 (305)
||-....+. .+. .+.++++++|++++.-
T Consensus 242 vie~~G~~~---~~~-~ai~~~r~gG~v~~vG 269 (350)
T COG1063 242 VIEAVGSPP---ALD-QALEALRPGGTVVVVG 269 (350)
T ss_pred EEECCCCHH---HHH-HHHHHhcCCCEEEEEe
Confidence 997666332 444 7778999999998864
|
|
| >PRK06940 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=87.85 E-value=4 Score=36.67 Aligned_cols=76 Identities=14% Similarity=0.185 Sum_probs=50.7
Q ss_pred CEEEEEecCCCccHHHHHhhhCCCcEEEEEeCChHHHHHHHHHHHcC-CCeEEEEccCCCCccccc------CCCcEeEE
Q 021911 145 ARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKR-TNVIPIIEDARHPAKYRM------LVGMVDVI 217 (305)
Q Consensus 145 ~~VLDlG~G~G~~t~~la~~~~~~~~V~avD~s~~~~~~l~~~a~~~-~nI~~~~~D~~~~~~~~~------~~~~fD~V 217 (305)
..+|-.|+ +....++++.+....+|+.++.++..+.++.+..+.. .++.++.+|+.+...... ....+|+|
T Consensus 3 k~~lItGa--~gIG~~la~~l~~G~~Vv~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dv~d~~~i~~~~~~~~~~g~id~l 80 (275)
T PRK06940 3 EVVVVIGA--GGIGQAIARRVGAGKKVLLADYNEENLEAAAKTLREAGFDVSTQEVDVSSRESVKALAATAQTLGPVTGL 80 (275)
T ss_pred CEEEEECC--ChHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHHHHhcCCeEEEEEeecCCHHHHHHHHHHHHhcCCCCEE
Confidence 35565564 4788999988765568999998876555555444432 468888999987643211 12468999
Q ss_pred EEeCC
Q 021911 218 FSDVA 222 (305)
Q Consensus 218 ~~d~~ 222 (305)
+.++.
T Consensus 81 i~nAG 85 (275)
T PRK06940 81 VHTAG 85 (275)
T ss_pred EECCC
Confidence 98765
|
|
| >PRK03659 glutathione-regulated potassium-efflux system protein KefB; Provisional | Back alignment and domain information |
|---|
Probab=87.42 E-value=4 Score=41.39 Aligned_cols=96 Identities=13% Similarity=0.081 Sum_probs=65.4
Q ss_pred CEEEEEecCCCccHHHHHhhhC-CCcEEEEEeCChHHHHHHHHHHHcCCCeEEEEccCCCCcccc-cCCCcEeEEEEeCC
Q 021911 145 ARVLYLGAASGTTVSHVSDIVG-PNGVVYAVEFSHRSGRDLVNMAKKRTNVIPIIEDARHPAKYR-MLVGMVDVIFSDVA 222 (305)
Q Consensus 145 ~~VLDlG~G~G~~t~~la~~~~-~~~~V~avD~s~~~~~~l~~~a~~~~nI~~~~~D~~~~~~~~-~~~~~fD~V~~d~~ 222 (305)
.+|+= ||-|.++..+++.+. ....++.+|.+++. ++.+++ .....+.+|+++..... ......|+|++...
T Consensus 401 ~~vII--~G~Gr~G~~va~~L~~~g~~vvvID~d~~~----v~~~~~-~g~~v~~GDat~~~~L~~agi~~A~~vv~~~~ 473 (601)
T PRK03659 401 PQVII--VGFGRFGQVIGRLLMANKMRITVLERDISA----VNLMRK-YGYKVYYGDATQLELLRAAGAEKAEAIVITCN 473 (601)
T ss_pred CCEEE--ecCchHHHHHHHHHHhCCCCEEEEECCHHH----HHHHHh-CCCeEEEeeCCCHHHHHhcCCccCCEEEEEeC
Confidence 45555 566778888887653 33479999999944 444443 35778999999876432 12458899998888
Q ss_pred ChhHHHHHHHHHhccCCCCcEEEEEE
Q 021911 223 QPDQARILALNASYFLKAGGHFVISI 248 (305)
Q Consensus 223 ~~~~~~~l~~~a~~~LkpGG~lv~s~ 248 (305)
.++....+. ...+.+.|.-+++...
T Consensus 474 d~~~n~~i~-~~~r~~~p~~~IiaRa 498 (601)
T PRK03659 474 EPEDTMKIV-ELCQQHFPHLHILARA 498 (601)
T ss_pred CHHHHHHHH-HHHHHHCCCCeEEEEe
Confidence 776665555 4455677887777665
|
|
| >KOG0024 consensus Sorbitol dehydrogenase [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=87.38 E-value=1.3 Score=41.03 Aligned_cols=99 Identities=24% Similarity=0.290 Sum_probs=60.5
Q ss_pred CCCCCCEEEEEecCC-CccHHHHHhhhCCCcEEEEEeCChHHHHHHHHHHHcC--CCeEEEEccCCCCccc------ccC
Q 021911 140 WIKPGARVLYLGAAS-GTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKR--TNVIPIIEDARHPAKY------RML 210 (305)
Q Consensus 140 ~~~~g~~VLDlG~G~-G~~t~~la~~~~~~~~V~avD~s~~~~~~l~~~a~~~--~nI~~~~~D~~~~~~~------~~~ 210 (305)
..+++++||-+|||| |..+...|+.++ ...|+.+|+++ .-++.|++- +.+....... .+... .+-
T Consensus 166 ~vk~Gs~vLV~GAGPIGl~t~l~Aka~G-A~~VVi~d~~~----~Rle~Ak~~Ga~~~~~~~~~~-~~~~~~~~v~~~~g 239 (354)
T KOG0024|consen 166 GVKKGSKVLVLGAGPIGLLTGLVAKAMG-ASDVVITDLVA----NRLELAKKFGATVTDPSSHKS-SPQELAELVEKALG 239 (354)
T ss_pred CcccCCeEEEECCcHHHHHHHHHHHHcC-CCcEEEeecCH----HHHHHHHHhCCeEEeeccccc-cHHHHHHHHHhhcc
Confidence 568899999999997 556777777775 56899999999 445566653 2222221111 11111 111
Q ss_pred CCcEeEEEEeCCChhHHHHHHHHHhccCCCCcEEEEEE
Q 021911 211 VGMVDVIFSDVAQPDQARILALNASYFLKAGGHFVISI 248 (305)
Q Consensus 211 ~~~fD~V~~d~~~~~~~~~l~~~a~~~LkpGG~lv~s~ 248 (305)
...+|++|-..-. ...+. .+...|+.+|++++.-
T Consensus 240 ~~~~d~~~dCsG~---~~~~~-aai~a~r~gGt~vlvg 273 (354)
T KOG0024|consen 240 KKQPDVTFDCSGA---EVTIR-AAIKATRSGGTVVLVG 273 (354)
T ss_pred ccCCCeEEEccCc---hHHHH-HHHHHhccCCEEEEec
Confidence 2357888753332 22222 4557899999987764
|
|
| >PRK09496 trkA potassium transporter peripheral membrane component; Reviewed | Back alignment and domain information |
|---|
Probab=87.27 E-value=4.5 Score=39.07 Aligned_cols=96 Identities=11% Similarity=0.209 Sum_probs=60.3
Q ss_pred EEEEEecCCCccHHHHHhhhCC-CcEEEEEeCChHHHHHHHHHHHcCCCeEEEEccCCCCcccccC-CCcEeEEEEeCCC
Q 021911 146 RVLYLGAASGTTVSHVSDIVGP-NGVVYAVEFSHRSGRDLVNMAKKRTNVIPIIEDARHPAKYRML-VGMVDVIFSDVAQ 223 (305)
Q Consensus 146 ~VLDlG~G~G~~t~~la~~~~~-~~~V~avD~s~~~~~~l~~~a~~~~nI~~~~~D~~~~~~~~~~-~~~fD~V~~d~~~ 223 (305)
+|+=+|+ |..+.++++.+.. ...|+.+|.++.. ++.+++...+.++..|+++....... ...+|.|++..+.
T Consensus 2 ~viIiG~--G~ig~~~a~~L~~~g~~v~vid~~~~~----~~~~~~~~~~~~~~gd~~~~~~l~~~~~~~a~~vi~~~~~ 75 (453)
T PRK09496 2 KIIIVGA--GQVGYTLAENLSGENNDVTVIDTDEER----LRRLQDRLDVRTVVGNGSSPDVLREAGAEDADLLIAVTDS 75 (453)
T ss_pred EEEEECC--CHHHHHHHHHHHhCCCcEEEEECCHHH----HHHHHhhcCEEEEEeCCCCHHHHHHcCCCcCCEEEEecCC
Confidence 5666555 8899999987643 3589999999843 33333334678888998775433222 4679999887765
Q ss_pred hhHHHHHHHHHhccCCCCcEEEEEE
Q 021911 224 PDQARILALNASYFLKAGGHFVISI 248 (305)
Q Consensus 224 ~~~~~~l~~~a~~~LkpGG~lv~s~ 248 (305)
.+....+. ...+.+.|.-.++..+
T Consensus 76 ~~~n~~~~-~~~r~~~~~~~ii~~~ 99 (453)
T PRK09496 76 DETNMVAC-QIAKSLFGAPTTIARV 99 (453)
T ss_pred hHHHHHHH-HHHHHhcCCCeEEEEE
Confidence 54444444 3444454444555544
|
|
| >PF05206 TRM13: Methyltransferase TRM13; InterPro: IPR007871 This entry consists of eukaryotic and bacterial proteins that specifically methylates guanosine-4 in various tRNAs with a Gly(CCG), His or Pro signatures [] | Back alignment and domain information |
|---|
Probab=87.15 E-value=3.7 Score=37.09 Aligned_cols=66 Identities=14% Similarity=0.165 Sum_probs=44.7
Q ss_pred CCCCCCEEEEEecCCCccHHHHHhhhC----CCcEEEEEeCChHHHHHHHHHHHcC---CCeEEEEccCCCCcc
Q 021911 140 WIKPGARVLYLGAASGTTVSHVSDIVG----PNGVVYAVEFSHRSGRDLVNMAKKR---TNVIPIIEDARHPAK 206 (305)
Q Consensus 140 ~~~~g~~VLDlG~G~G~~t~~la~~~~----~~~~V~avD~s~~~~~~l~~~a~~~---~nI~~~~~D~~~~~~ 206 (305)
.+.+...++|+|||.|.++.+++..+. +...++.||-...+. .+=...... +.++-+..|+.++..
T Consensus 15 ll~~~~~~vEfGaGrg~LS~~v~~~~~~~~~~~~~~~lIDR~~~R~-K~D~~~~~~~~~~~~~R~riDI~dl~l 87 (259)
T PF05206_consen 15 LLNPDSCFVEFGAGRGELSRWVAQALQEDKPSNSRFVLIDRASNRH-KADNKIRKDESEPKFERLRIDIKDLDL 87 (259)
T ss_pred CCCCCCEEEEECCCchHHHHHHHHHhhhcccCCccEEEEecCcccc-cchhhhhccCCCCceEEEEEEeeccch
Confidence 346778999999999999999999873 345789999853221 111111122 357778888877753
|
The alignment contains some conserved cysteines and histidines that might form a zinc binding site.; GO: 0008168 methyltransferase activity, 0008033 tRNA processing |
| >TIGR03451 mycoS_dep_FDH mycothiol-dependent formaldehyde dehydrogenase | Back alignment and domain information |
|---|
Probab=87.14 E-value=1.5 Score=41.06 Aligned_cols=97 Identities=20% Similarity=0.288 Sum_probs=53.8
Q ss_pred CCCCCCEEEEEecCC-CccHHHHHhhhCCCcEEEEEeCChHHHHHHHHHHHcCCCeEEEEccCCCCc--c-cc--cCCCc
Q 021911 140 WIKPGARVLYLGAAS-GTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKRTNVIPIIEDARHPA--K-YR--MLVGM 213 (305)
Q Consensus 140 ~~~~g~~VLDlG~G~-G~~t~~la~~~~~~~~V~avD~s~~~~~~l~~~a~~~~nI~~~~~D~~~~~--~-~~--~~~~~ 213 (305)
.++++++||-.|||+ |..+..+|+..+ ...|+++|.++.. ++.+++..--.++ |..... . .. .....
T Consensus 173 ~~~~g~~VlV~G~g~vG~~a~~~ak~~G-~~~Vi~~~~~~~~----~~~~~~~Ga~~~i--~~~~~~~~~~i~~~~~~~g 245 (358)
T TIGR03451 173 GVKRGDSVAVIGCGGVGDAAIAGAALAG-ASKIIAVDIDDRK----LEWAREFGATHTV--NSSGTDPVEAIRALTGGFG 245 (358)
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHcC-CCeEEEEcCCHHH----HHHHHHcCCceEE--cCCCcCHHHHHHHHhCCCC
Confidence 567899999997642 334555666653 2259999998843 3334332111111 111111 0 00 01135
Q ss_pred EeEEEEeCCChhHHHHHHHHHhccCCCCcEEEEE
Q 021911 214 VDVIFSDVAQPDQARILALNASYFLKAGGHFVIS 247 (305)
Q Consensus 214 fD~V~~d~~~~~~~~~l~~~a~~~LkpGG~lv~s 247 (305)
+|+|+-....+. .+. .+...|+++|++++.
T Consensus 246 ~d~vid~~g~~~---~~~-~~~~~~~~~G~iv~~ 275 (358)
T TIGR03451 246 ADVVIDAVGRPE---TYK-QAFYARDLAGTVVLV 275 (358)
T ss_pred CCEEEECCCCHH---HHH-HHHHHhccCCEEEEE
Confidence 898885444332 333 566799999999875
|
Members of this protein family are mycothiol-dependent formaldehyde dehydrogenase (EC 1.2.1.66). This protein is found, so far, only in the Actinobacteria (Mycobacterium sp., Streptomyces sp., Corynebacterium sp., and related species), where mycothione replaces glutathione. |
| >cd08281 liver_ADH_like1 Zinc-dependent alcohol dehydrogenases (ADH) and class III ADG (AKA formaldehyde dehydrogenase) | Back alignment and domain information |
|---|
Probab=87.11 E-value=3.7 Score=38.59 Aligned_cols=99 Identities=20% Similarity=0.274 Sum_probs=53.9
Q ss_pred CCCCCCEEEEEecCC-CccHHHHHhhhCCCcEEEEEeCChHHHHHHHHHHHcCCCeEEEEccCCCCcc-cc-cCCCcEeE
Q 021911 140 WIKPGARVLYLGAAS-GTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKRTNVIPIIEDARHPAK-YR-MLVGMVDV 216 (305)
Q Consensus 140 ~~~~g~~VLDlG~G~-G~~t~~la~~~~~~~~V~avD~s~~~~~~l~~~a~~~~nI~~~~~D~~~~~~-~~-~~~~~fD~ 216 (305)
.++++++||-+|+|+ |..+..+|+..+ ...|+++|.++.. ++.+++..--.++..+-.++.. .. .....+|+
T Consensus 188 ~i~~g~~VlV~G~G~vG~~a~~lak~~G-~~~Vi~~~~~~~r----~~~a~~~Ga~~~i~~~~~~~~~~i~~~~~~g~d~ 262 (371)
T cd08281 188 GVRPGQSVAVVGLGGVGLSALLGAVAAG-ASQVVAVDLNEDK----LALARELGATATVNAGDPNAVEQVRELTGGGVDY 262 (371)
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHcC-CCcEEEEcCCHHH----HHHHHHcCCceEeCCCchhHHHHHHHHhCCCCCE
Confidence 577889999988642 334455566543 2269999999843 3344332111111111111100 00 11236899
Q ss_pred EEEeCCChhHHHHHHHHHhccCCCCcEEEEE
Q 021911 217 IFSDVAQPDQARILALNASYFLKAGGHFVIS 247 (305)
Q Consensus 217 V~~d~~~~~~~~~l~~~a~~~LkpGG~lv~s 247 (305)
||-....+. .+. .+.+.|+++|++++.
T Consensus 263 vid~~G~~~---~~~-~~~~~l~~~G~iv~~ 289 (371)
T cd08281 263 AFEMAGSVP---ALE-TAYEITRRGGTTVTA 289 (371)
T ss_pred EEECCCChH---HHH-HHHHHHhcCCEEEEE
Confidence 986554432 233 566789999998874
|
NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. This group contains members identified as zinc dependent alcohol dehydrogenases (ADH), and class III ADG (aka formaldehyde dehydrogenase, FDH). Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. Class III ADH are also know as glutathione-dependent formaldehyde dehyd |
| >COG0604 Qor NADPH:quinone reductase and related Zn-dependent oxidoreductases [Energy production and conversion / General function prediction only] | Back alignment and domain information |
|---|
Probab=87.03 E-value=2.1 Score=39.96 Aligned_cols=98 Identities=27% Similarity=0.241 Sum_probs=57.6
Q ss_pred CCCCCCEEEEEecCC--CccHHHHHhhhCCCcEEEEEeCChHHHHHHHHHHHcCC---CeEEEEccCCCCcccccCCCcE
Q 021911 140 WIKPGARVLYLGAAS--GTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKRT---NVIPIIEDARHPAKYRMLVGMV 214 (305)
Q Consensus 140 ~~~~g~~VLDlG~G~--G~~t~~la~~~~~~~~V~avD~s~~~~~~l~~~a~~~~---nI~~~~~D~~~~~~~~~~~~~f 214 (305)
.++++++||-.|++. |.++.+||+.++- +++++--+++. .+.+++.- -|.+...|+.+..........|
T Consensus 139 ~l~~g~~VLV~gaaGgVG~~aiQlAk~~G~--~~v~~~~s~~k----~~~~~~lGAd~vi~y~~~~~~~~v~~~t~g~gv 212 (326)
T COG0604 139 GLKPGETVLVHGAAGGVGSAAIQLAKALGA--TVVAVVSSSEK----LELLKELGADHVINYREEDFVEQVRELTGGKGV 212 (326)
T ss_pred CCCCCCEEEEecCCchHHHHHHHHHHHcCC--cEEEEecCHHH----HHHHHhcCCCEEEcCCcccHHHHHHHHcCCCCc
Confidence 578899999999654 4578888888642 66666666522 22444331 1222233332221111112369
Q ss_pred eEEEEeCCChhHHHHHHHHHhccCCCCcEEEEEE
Q 021911 215 DVIFSDVAQPDQARILALNASYFLKAGGHFVISI 248 (305)
Q Consensus 215 D~V~~d~~~~~~~~~l~~~a~~~LkpGG~lv~s~ 248 (305)
|+|+-.+-..... ++...|+++|+++..-
T Consensus 213 Dvv~D~vG~~~~~-----~~l~~l~~~G~lv~ig 241 (326)
T COG0604 213 DVVLDTVGGDTFA-----ASLAALAPGGRLVSIG 241 (326)
T ss_pred eEEEECCCHHHHH-----HHHHHhccCCEEEEEe
Confidence 9999666544444 3446899999998864
|
|
| >PRK03562 glutathione-regulated potassium-efflux system protein KefC; Provisional | Back alignment and domain information |
|---|
Probab=86.87 E-value=4.1 Score=41.51 Aligned_cols=97 Identities=11% Similarity=0.085 Sum_probs=63.1
Q ss_pred CCEEEEEecCCCccHHHHHhhhCC-CcEEEEEeCChHHHHHHHHHHHcCCCeEEEEccCCCCcccc-cCCCcEeEEEEeC
Q 021911 144 GARVLYLGAASGTTVSHVSDIVGP-NGVVYAVEFSHRSGRDLVNMAKKRTNVIPIIEDARHPAKYR-MLVGMVDVIFSDV 221 (305)
Q Consensus 144 g~~VLDlG~G~G~~t~~la~~~~~-~~~V~avD~s~~~~~~l~~~a~~~~nI~~~~~D~~~~~~~~-~~~~~fD~V~~d~ 221 (305)
..+|+=+|| |.+...+++.+.. .-.++.+|.++.+ .+.+++ .....+.+|+++++... ...+.+|+|++..
T Consensus 400 ~~~vII~G~--Gr~G~~va~~L~~~g~~vvvID~d~~~----v~~~~~-~g~~v~~GDat~~~~L~~agi~~A~~vvv~~ 472 (621)
T PRK03562 400 QPRVIIAGF--GRFGQIVGRLLLSSGVKMTVLDHDPDH----IETLRK-FGMKVFYGDATRMDLLESAGAAKAEVLINAI 472 (621)
T ss_pred cCcEEEEec--ChHHHHHHHHHHhCCCCEEEEECCHHH----HHHHHh-cCCeEEEEeCCCHHHHHhcCCCcCCEEEEEe
Confidence 356777665 5677777776543 3479999999954 444433 35678999999886442 1245889999888
Q ss_pred CChhHHHHHHHHHhccCCCCcEEEEEE
Q 021911 222 AQPDQARILALNASYFLKAGGHFVISI 248 (305)
Q Consensus 222 ~~~~~~~~l~~~a~~~LkpGG~lv~s~ 248 (305)
..++....+. ...+.+.|.-.++..+
T Consensus 473 ~d~~~n~~i~-~~ar~~~p~~~iiaRa 498 (621)
T PRK03562 473 DDPQTSLQLV-ELVKEHFPHLQIIARA 498 (621)
T ss_pred CCHHHHHHHH-HHHHHhCCCCeEEEEE
Confidence 7766555555 4444556765655543
|
|
| >PF03446 NAD_binding_2: NAD binding domain of 6-phosphogluconate dehydrogenase; InterPro: IPR006115 6-Phosphogluconate dehydrogenase (1 | Back alignment and domain information |
|---|
Probab=86.83 E-value=2.9 Score=34.62 Aligned_cols=107 Identities=13% Similarity=0.116 Sum_probs=57.6
Q ss_pred CCCccHHHHHhhhC-CCcEEEEEeCChHHHHHHHHHHHcCCCeEEEEccCCCCcccccCCCcEeEEEEeCCChhHHHHHH
Q 021911 153 ASGTTVSHVSDIVG-PNGVVYAVEFSHRSGRDLVNMAKKRTNVIPIIEDARHPAKYRMLVGMVDVIFSDVAQPDQARILA 231 (305)
Q Consensus 153 G~G~~t~~la~~~~-~~~~V~avD~s~~~~~~l~~~a~~~~nI~~~~~D~~~~~~~~~~~~~fD~V~~d~~~~~~~~~l~ 231 (305)
|.|.....+|..+- ....|+..|.++...+++ .+. .++. ..+..+. ....|+|++.++...+.+.+.
T Consensus 8 GlG~mG~~~a~~L~~~g~~v~~~d~~~~~~~~~----~~~-g~~~-~~s~~e~------~~~~dvvi~~v~~~~~v~~v~ 75 (163)
T PF03446_consen 8 GLGNMGSAMARNLAKAGYEVTVYDRSPEKAEAL----AEA-GAEV-ADSPAEA------AEQADVVILCVPDDDAVEAVL 75 (163)
T ss_dssp --SHHHHHHHHHHHHTTTEEEEEESSHHHHHHH----HHT-TEEE-ESSHHHH------HHHBSEEEE-SSSHHHHHHHH
T ss_pred chHHHHHHHHHHHHhcCCeEEeeccchhhhhhh----HHh-hhhh-hhhhhhH------hhcccceEeecccchhhhhhh
Confidence 34677888877652 345899999998443333 222 2222 2222221 245699999999887776555
Q ss_pred HH--HhccCCCCcEEEEEEcccccCCCCchhhhHHHHHHHHHHCCCcEeE
Q 021911 232 LN--ASYFLKAGGHFVISIKANCIDSTVPAEAVFQSEVKKLQQDQFKPFE 279 (305)
Q Consensus 232 ~~--a~~~LkpGG~lv~s~~~~~i~~~~~~~~v~~~~~~~l~~~Gf~~~e 279 (305)
.. +...|++|-.++-.+ +..+... .+..+.+.+.|...++
T Consensus 76 ~~~~i~~~l~~g~iiid~s-------T~~p~~~-~~~~~~~~~~g~~~vd 117 (163)
T PF03446_consen 76 FGENILAGLRPGKIIIDMS-------TISPETS-RELAERLAAKGVRYVD 117 (163)
T ss_dssp HCTTHGGGS-TTEEEEE-S-------S--HHHH-HHHHHHHHHTTEEEEE
T ss_pred hhhHHhhccccceEEEecC-------Ccchhhh-hhhhhhhhhccceeee
Confidence 35 678888875554432 2222222 2233555667765554
|
1.1.44 from EC) (6PGD) is an oxidative carboxylase that catalyses the decarboxylating reduction of 6-phosphogluconate into ribulose 5-phosphate in the presence of NADP. This reaction is a component of the hexose mono-phosphate shunt and pentose phosphate pathways (PPP) [, ]. Prokaryotic and eukaryotic 6PGD are proteins of about 470 amino acids whose sequence are highly conserved []. The protein is a homodimer in which the monomers act independently []: each contains a large, mainly alpha-helical domain and a smaller beta-alpha-beta domain, containing a mixed parallel and anti-parallel 6-stranded beta sheet []. NADP is bound in a cleft in the small domain, the substrate binding in an adjacent pocket []. This family represents the NADP binding domain of 6-phosphogluconate dehydrogenase which adopts a Rossman fold. The C-terminal domain is described in IPR006114 from INTERPRO.; GO: 0004616 phosphogluconate dehydrogenase (decarboxylating) activity, 0006098 pentose-phosphate shunt, 0055114 oxidation-reduction process; PDB: 3AX6_D 3PDU_G 3Q3C_A 3OBB_A 4DLL_B 1PGP_A 1PGN_A 2PGD_A 1PGQ_A 1PGO_A .... |
| >PF03435 Saccharop_dh: Saccharopine dehydrogenase ; InterPro: IPR005097 This entry represents saccharopine dehydrogenase and homospermidine synthase | Back alignment and domain information |
|---|
Probab=86.64 E-value=1.9 Score=41.02 Aligned_cols=75 Identities=20% Similarity=0.255 Sum_probs=46.2
Q ss_pred EEEEecCCCccHHHHHhhhCCCc---EEEEEeCChHHHHHHHHHHHcCCCeEEEEccCCCCcccccCCCcEeEEEEeCCC
Q 021911 147 VLYLGAASGTTVSHVSDIVGPNG---VVYAVEFSHRSGRDLVNMAKKRTNVIPIIEDARHPAKYRMLVGMVDVIFSDVAQ 223 (305)
Q Consensus 147 VLDlG~G~G~~t~~la~~~~~~~---~V~avD~s~~~~~~l~~~a~~~~nI~~~~~D~~~~~~~~~~~~~fD~V~~d~~~ 223 (305)
||=+|| |.....+++.+-... +|+..|.+...++.+.+.. ...++.+++.|+.+......+....|+|+...+.
T Consensus 1 IlvlG~--G~vG~~~~~~L~~~~~~~~v~va~r~~~~~~~~~~~~-~~~~~~~~~~d~~~~~~l~~~~~~~dvVin~~gp 77 (386)
T PF03435_consen 1 ILVLGA--GRVGSAIARLLARRGPFEEVTVADRNPEKAERLAEKL-LGDRVEAVQVDVNDPESLAELLRGCDVVINCAGP 77 (386)
T ss_dssp EEEE----SHHHHHHHHHHHCTTCE-EEEEEESSHHHHHHHHT---TTTTEEEEE--TTTHHHHHHHHTTSSEEEE-SSG
T ss_pred CEEEcC--cHHHHHHHHHHhcCCCCCcEEEEECCHHHHHHHHhhc-cccceeEEEEecCCHHHHHHHHhcCCEEEECCcc
Confidence 567787 787777776653322 7899999985544443332 3368999999998876543334566999987764
Q ss_pred h
Q 021911 224 P 224 (305)
Q Consensus 224 ~ 224 (305)
.
T Consensus 78 ~ 78 (386)
T PF03435_consen 78 F 78 (386)
T ss_dssp G
T ss_pred c
Confidence 3
|
Saccharopine reductase (SR) 1.5.1.10 from EC) catalyses the condensation of l-alpha-aminoadipate-delta-semialdehyde (AASA) with l-glutamate to give an imine, which is reduced by NADPH to give saccharopine []. In some organisms this enzyme is found as a bifunctional polypeptide with lysine ketoglutarate reductase (PF). Saccharopine dehydrogenase can also function as a saccharopine reductase. Homospermidine synthase proteins (2.5.1.44 from EC). Homospermidine synthase (HSS) catalyses the synthesis of the polyamine homospermidine from 2 mol putrescine in an NAD+-dependent reaction [].; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2AXQ_A 1E5Q_A 1FF9_A 1E5L_A 2PH5_A 3IC5_A 3ABI_A. |
| >PF06460 NSP13: Coronavirus NSP13; InterPro: IPR009461 This domain covers the NSP13 region of the coronavirus polyprotein | Back alignment and domain information |
|---|
Probab=86.63 E-value=19 Score=32.56 Aligned_cols=136 Identities=18% Similarity=0.156 Sum_probs=65.4
Q ss_pred CCCCCCEEEEEecCCCc---c-HHHHHhhhCCCcEEEEEeCChHHHHHHHHHHHcCCCeEEEEccCCCCcccccCCCcEe
Q 021911 140 WIKPGARVLYLGAASGT---T-VSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKRTNVIPIIEDARHPAKYRMLVGMVD 215 (305)
Q Consensus 140 ~~~~g~~VLDlG~G~G~---~-t~~la~~~~~~~~V~avD~s~~~~~~l~~~a~~~~nI~~~~~D~~~~~~~~~~~~~fD 215 (305)
..+.+++||-+|||+=- - +..|.+.+.....++-.|+.+ ... +.-..+..|.+... .+.+||
T Consensus 58 aVP~nMrVlHlGAgSdkGvaPGt~VLrqwlP~~ailvDnDi~d--------~vS--Da~~~~~~Dc~t~~----~~~k~D 123 (299)
T PF06460_consen 58 AVPHNMRVLHLGAGSDKGVAPGTAVLRQWLPEDAILVDNDIRD--------YVS--DADQSIVGDCRTYM----PPDKFD 123 (299)
T ss_dssp ---TT-EEEEES---TTSB-HHHHHHHHHS-TT-EEEEEESS----------B---SSSEEEES-GGGEE----ESS-EE
T ss_pred eeccCcEEEEecccccCCcCCchHHHHHhCCCCcEEEecchhh--------hcc--ccCCceeccccccC----CCCccc
Confidence 45678999999987532 1 334444454445566777765 122 22345677876654 357999
Q ss_pred EEEEeCCC-------------hhHHHHHHHHHhccCCCCcEEEEEEcccccCCCCchhhhHHHHHHHHHHCCCcEeEEee
Q 021911 216 VIFSDVAQ-------------PDQARILALNASYFLKAGGHFVISIKANCIDSTVPAEAVFQSEVKKLQQDQFKPFEQVT 282 (305)
Q Consensus 216 ~V~~d~~~-------------~~~~~~l~~~a~~~LkpGG~lv~s~~~~~i~~~~~~~~v~~~~~~~l~~~Gf~~~e~~~ 282 (305)
+||+|+-. ..-..-+..-+...|+-||.+++-+- +... ..++.+|.+. |.-.+.+.
T Consensus 124 lIiSDmYd~~~k~~~~~n~~~~~fF~yl~~~i~~kLaLGGSvaiKiT-------E~Sw---~~~Lyel~~~-F~~wt~Fc 192 (299)
T PF06460_consen 124 LIISDMYDGRTKNCDGENNSKEGFFTYLCGFIKEKLALGGSVAIKIT-------EHSW---NAQLYELMGY-FSWWTCFC 192 (299)
T ss_dssp EEEE----TTS-SS-S------THHHHHHHHHHHHEEEEEEEEEEE--------SSS-----HHHHHHHTT-EEEEEEEE
T ss_pred EEEEecccccccccccccCCccccHHHHHHHHHhhhhcCceEEEEee-------cccc---cHHHHHHHhh-cccEEEEe
Confidence 99998861 11112222245578999999999771 1111 2334444444 66666553
Q ss_pred cC-CCCCceEEEEEEEcCC
Q 021911 283 LE-PFERDHACVVGGYRMP 300 (305)
Q Consensus 283 l~-p~~~~~~~vv~~~~~~ 300 (305)
.. -....++++++..--.
T Consensus 193 T~VNtSSSEaFLigiNYLg 211 (299)
T PF06460_consen 193 TAVNTSSSEAFLIGINYLG 211 (299)
T ss_dssp EGGGTTSS-EEEEEEEE-S
T ss_pred cccCccccceeEEeeeccC
Confidence 32 2335667777665433
|
This protein has the predicted function of an mRNA cap-1 methyltransferase []. The human coronavirus 229E (HCoV-229E) replicase gene-encoded nonstructural protein 13 (nsp13) contains an N-terminal zinc-binding domain and a C-terminal superfamily 1 helicase domain []. All natural ribonucleotides and nucleotides are substrates of nsp13, with ATP, dATP, and GTP being hydrolyzed most efficiently. Using the NTPase active site, HCoV-229E nsp13 also mediates RNA 5'-triphosphatase activity, which may be involved in the capping of viral RNAs.; GO: 0003968 RNA-directed RNA polymerase activity, 0004197 cysteine-type endopeptidase activity, 0008168 methyltransferase activity, 0008233 peptidase activity, 0016817 hydrolase activity, acting on acid anhydrides, 0016896 exoribonuclease activity, producing 5'-phosphomonoesters; PDB: 2XYV_A 2XYR_A 3R24_A 2XYQ_A. |
| >TIGR03366 HpnZ_proposed putative phosphonate catabolism associated alcohol dehydrogenase | Back alignment and domain information |
|---|
Probab=86.62 E-value=3.3 Score=37.30 Aligned_cols=98 Identities=21% Similarity=0.152 Sum_probs=52.8
Q ss_pred CCCCCCEEEEEecCC-CccHHHHHhhhCCCcEEEEEeCChHHHHHHHHHHHcCCCeEEEEccCCCCcc-cc-c-CCCcEe
Q 021911 140 WIKPGARVLYLGAAS-GTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKRTNVIPIIEDARHPAK-YR-M-LVGMVD 215 (305)
Q Consensus 140 ~~~~g~~VLDlG~G~-G~~t~~la~~~~~~~~V~avD~s~~~~~~l~~~a~~~~nI~~~~~D~~~~~~-~~-~-~~~~fD 215 (305)
...++++||-+|+|+ |..+..+|+..+ ...|+++|.++.. ++.+++.. +..+. |...... .. . ....+|
T Consensus 117 ~~~~g~~VlV~G~G~vG~~~~~~ak~~G-~~~Vi~~~~~~~r----~~~a~~~G-a~~~i-~~~~~~~~~~~~~~~~g~d 189 (280)
T TIGR03366 117 GDLKGRRVLVVGAGMLGLTAAAAAAAAG-AARVVAADPSPDR----RELALSFG-ATALA-EPEVLAERQGGLQNGRGVD 189 (280)
T ss_pred cCCCCCEEEEECCCHHHHHHHHHHHHcC-CCEEEEECCCHHH----HHHHHHcC-CcEec-CchhhHHHHHHHhCCCCCC
Confidence 455889999997642 224445555543 2248899988743 33444321 11111 1111110 00 0 123589
Q ss_pred EEEEeCCChhHHHHHHHHHhccCCCCcEEEEEE
Q 021911 216 VIFSDVAQPDQARILALNASYFLKAGGHFVISI 248 (305)
Q Consensus 216 ~V~~d~~~~~~~~~l~~~a~~~LkpGG~lv~s~ 248 (305)
+|+-....+. .+. .+.+.|+++|++++.-
T Consensus 190 ~vid~~G~~~---~~~-~~~~~l~~~G~iv~~G 218 (280)
T TIGR03366 190 VALEFSGATA---AVR-ACLESLDVGGTAVLAG 218 (280)
T ss_pred EEEECCCChH---HHH-HHHHHhcCCCEEEEec
Confidence 9986554433 233 5567999999998753
|
This clade of zinc-binding alcohol dehydrogenases (members of pfam00107) are repeatedly associated with genes proposed to be involved with the catabolism of phosphonate compounds. |
| >KOG2651 consensus rRNA adenine N-6-methyltransferase [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=86.62 E-value=1.4 Score=41.74 Aligned_cols=38 Identities=29% Similarity=0.183 Sum_probs=31.6
Q ss_pred CCCCCEEEEEecCCCccHHHHHhhhCCCcEEEEEeCChHH
Q 021911 141 IKPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRS 180 (305)
Q Consensus 141 ~~~g~~VLDlG~G~G~~t~~la~~~~~~~~V~avD~s~~~ 180 (305)
..+-..|+|+|+|.|.++..++-.++ -.|+|||-|+..
T Consensus 151 f~gi~~vvD~GaG~G~LSr~lSl~y~--lsV~aIegsq~~ 188 (476)
T KOG2651|consen 151 FTGIDQVVDVGAGQGHLSRFLSLGYG--LSVKAIEGSQRL 188 (476)
T ss_pred hcCCCeeEEcCCCchHHHHHHhhccC--ceEEEeccchHH
Confidence 34567999999999999999997754 589999999644
|
|
| >PF05063 MT-A70: MT-A70 ; InterPro: IPR007757 N6-methyladenosine (m6A) is present at internal sites in eukaryotic mRNA | Back alignment and domain information |
|---|
Probab=86.54 E-value=2.2 Score=35.94 Aligned_cols=59 Identities=15% Similarity=0.214 Sum_probs=39.9
Q ss_pred EeEEEEeCCCh-----------------hHHHHHHHHHhccCCCCcEEEEEEcccccCCCCchhhhHHHHHHHHHHCCCc
Q 021911 214 VDVIFSDVAQP-----------------DQARILALNASYFLKAGGHFVISIKANCIDSTVPAEAVFQSEVKKLQQDQFK 276 (305)
Q Consensus 214 fD~V~~d~~~~-----------------~~~~~l~~~a~~~LkpGG~lv~s~~~~~i~~~~~~~~v~~~~~~~l~~~Gf~ 276 (305)
||+|++|+|.+ ...++..+-+.+++.+++.|++-+ .+...... ..+.|++.||+
T Consensus 1 fdvI~~DPPW~~~~~~~~~~~~~~Y~tm~~~~i~~Lpv~~l~~~~~~lflWv--------Tn~~~~~~-~~~l~~~WGf~ 71 (176)
T PF05063_consen 1 FDVIYADPPWPNKSASRKGGAEAHYPTMSLDEIKSLPVPQLAAPGALLFLWV--------TNSQLPEA-KLELFPAWGFE 71 (176)
T ss_pred CCEEEEeCCCCCcCcccccccccCCCccCHHHHHhCCHHHhCCCCcEEEEEe--------ccchhhHH-HHHHHHhCCCE
Confidence 79999999922 345666667888999988888865 11222211 35667889999
Q ss_pred EeEEe
Q 021911 277 PFEQV 281 (305)
Q Consensus 277 ~~e~~ 281 (305)
..+..
T Consensus 72 ~~~~~ 76 (176)
T PF05063_consen 72 YVTEW 76 (176)
T ss_pred EEEEE
Confidence 87754
|
It is present only within a defined sequence context that has been shown to be conserved across species from plants to man. Despite its ubiquity and conserved sequence specificity, the functional significance of this modification remains a mystery [], []. MT-A70 is the S-adenosylmethionine-binding subunit of human mRNA N6-adenosine-methyltransferase (MTase), an enzyme that sequence-specifically methylates adenines in pre-mRNAs. Proteins with sequence similarity to MT-A70 have been identified in eukaryotes and prokaryotes. The resulting family is defined by sequence similarity in the carboxyl-proximal regions of the respective proteins. The amino-proximal regions of the eukaryotic proteins are highly diverse, often Pro-rich, and are conserved only within individual subfamilies []. Corresponding regions are not present in prokaryotic members of the family. MT-A70-like proteins contain examples of some of the consensus methyltransferase motifs that have been derived from mutational and structural studies of bacterial DNA methyltransferases, including the universally conserved motif IV catalytic residues and a proposed motif I (AdoMet binding) element []. The MT-A70-like family comprises four subfamilies with varying degrees of interrelatedness. One subfamily is a small group of bacterial DNA: m6A MTases. The other three are paralogous eukaryotic lineages, two of which have not been associated with MTase activity but include proteins that regulate mRNA levels via unknown mechanisms apparently not involving methylation []. Some proteins known to belong to the MT-A70-like family are listed below: Human N6-adenosine-methyltransferase 70 kDa subunit (MT-A70) (2.1.1.62 from EC). Yeast N6-adenosine-methyltransferase IME4 (2.1.1.62 from EC), which is important for induction of sporulation. Yeast karyogamy protein KAR4, a phosphoprotein required for expression of karyogamy-specific genes during mating and that it also acts during mitosis and meiosis. It has been suggested that KAR4 is inactive for methyltransfer and may not even bind AdoMet. ; GO: 0008168 methyltransferase activity, 0006139 nucleobase-containing compound metabolic process |
| >KOG3350 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=86.51 E-value=5.8 Score=33.69 Aligned_cols=109 Identities=20% Similarity=0.220 Sum_probs=64.7
Q ss_pred hhHHHHHHHccccccCCCCCCEEEEEecCCCccHHHHHhhhCCCcEEEEEeCChHHHHHHHHHHHcCCCeEEEEccCCCC
Q 021911 125 RSKLAAAVLGGVDNIWIKPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKRTNVIPIIEDARHP 204 (305)
Q Consensus 125 ~s~l~a~ll~~l~~~~~~~g~~VLDlG~G~G~~t~~la~~~~~~~~V~avD~s~~~~~~l~~~a~~~~nI~~~~~D~~~~ 204 (305)
..+|++..+. ....+.+|--+-|=+=.+-.-.-+.--|.-+|+-+|++.+. ++ . --+|+.-|...+
T Consensus 60 a~~La~e~v~-----~s~e~~rIacvS~Psly~y~k~re~~~~~~~v~lfEfDkRF--e~--y-----g~eFvfYDyN~p 125 (217)
T KOG3350|consen 60 ARKLAAERVE-----ASGEGSRIACVSCPSLYVYQKKREIEIPHDQVYLFEFDKRF--EL--Y-----GTEFVFYDYNCP 125 (217)
T ss_pred HHHHHHHHHh-----hcccCceEEEEeCchHHhhhhhhhccCCceeEEEEEehhhH--Hh--c-----cceeEEeccCCC
Confidence 4566666653 33455667666654322222222222246689999999844 11 1 146777887665
Q ss_pred cccc-cCCCcEeEEEEeCCChh---HHHHHHHHHhccCCCCcEEEEEE
Q 021911 205 AKYR-MLVGMVDVIFSDVAQPD---QARILALNASYFLKAGGHFVISI 248 (305)
Q Consensus 205 ~~~~-~~~~~fD~V~~d~~~~~---~~~~l~~~a~~~LkpGG~lv~s~ 248 (305)
.... .+...||+|++|+|.-. +...-. .+..++++.-++++.|
T Consensus 126 ~dlp~~lk~~fdiivaDPPfL~~eCl~Kts~-tik~L~r~~~kvilCt 172 (217)
T KOG3350|consen 126 LDLPDELKAHFDIIVADPPFLSEECLAKTSE-TIKRLQRNQKKVILCT 172 (217)
T ss_pred CCCHHHHHhcccEEEeCCccccchhhhhhHH-HHHHHhcCCceEEEec
Confidence 4321 23468999999999433 233333 5678888888888876
|
|
| >KOG0023 consensus Alcohol dehydrogenase, class V [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=86.36 E-value=1.9 Score=39.98 Aligned_cols=116 Identities=17% Similarity=0.197 Sum_probs=65.9
Q ss_pred hhhHHHHHHHc-------cccccCCCCCCEEEEEec-CCCccHHHHHhhhCCCcEEEEEeCChHHHHHHHHHHHcCCCeE
Q 021911 124 FRSKLAAAVLG-------GVDNIWIKPGARVLYLGA-ASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKRTNVI 195 (305)
Q Consensus 124 ~~s~l~a~ll~-------~l~~~~~~~g~~VLDlG~-G~G~~t~~la~~~~~~~~V~avD~s~~~~~~l~~~a~~~~nI~ 195 (305)
..+..+|.||- .|......|+.+|--+|. |-|.++..+|+.++ -+|+++|-+.+..+++++..-..
T Consensus 155 ~pl~~aAPlLCaGITvYspLk~~g~~pG~~vgI~GlGGLGh~aVq~AKAMG--~rV~vis~~~~kkeea~~~LGAd---- 228 (360)
T KOG0023|consen 155 LPLASAAPLLCAGITVYSPLKRSGLGPGKWVGIVGLGGLGHMAVQYAKAMG--MRVTVISTSSKKKEEAIKSLGAD---- 228 (360)
T ss_pred CChhhccchhhcceEEeehhHHcCCCCCcEEEEecCcccchHHHHHHHHhC--cEEEEEeCCchhHHHHHHhcCcc----
Confidence 44555666552 244456779998888875 47889999999986 48999999975555555543321
Q ss_pred EEEccCC-CCcccccCCCcEeEEEEeCCChhHHHHHHHHHhccCCCCcEEEEEE
Q 021911 196 PIIEDAR-HPAKYRMLVGMVDVIFSDVAQPDQARILALNASYFLKAGGHFVISI 248 (305)
Q Consensus 196 ~~~~D~~-~~~~~~~~~~~fD~V~~d~~~~~~~~~l~~~a~~~LkpGG~lv~s~ 248 (305)
..+ |++ +.+.........|.++-.++.- -...+. .+..+||++|++++.-
T Consensus 229 ~fv-~~~~d~d~~~~~~~~~dg~~~~v~~~-a~~~~~-~~~~~lk~~Gt~V~vg 279 (360)
T KOG0023|consen 229 VFV-DSTEDPDIMKAIMKTTDGGIDTVSNL-AEHALE-PLLGLLKVNGTLVLVG 279 (360)
T ss_pred eeE-EecCCHHHHHHHHHhhcCcceeeeec-cccchH-HHHHHhhcCCEEEEEe
Confidence 111 111 1111111123344443322211 111222 4557999999999864
|
|
| >PF12692 Methyltransf_17: S-adenosyl-L-methionine methyltransferase; PDB: 3IHT_B | Back alignment and domain information |
|---|
Probab=86.01 E-value=0.93 Score=37.23 Aligned_cols=99 Identities=21% Similarity=0.244 Sum_probs=51.5
Q ss_pred CCEEEEEecCCCccHHHHHhhhCCCcEEEEEeCChHHHHHHHHHHHcCCCeEEEEccCCCCccc-ccCCCcEeEEEEeCC
Q 021911 144 GARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKRTNVIPIIEDARHPAKY-RMLVGMVDVIFSDVA 222 (305)
Q Consensus 144 g~~VLDlG~G~G~~t~~la~~~~~~~~V~avD~s~~~~~~l~~~a~~~~nI~~~~~D~~~~~~~-~~~~~~fD~V~~d~~ 222 (305)
..-|||+|=|+|.+--||.+.+ |...|+++|-.-..--+++- +.-.+++.|+.+..+. .......-++.+|.-
T Consensus 29 ~G~VlElGLGNGRTydHLRe~~-p~R~I~vfDR~l~~hp~~~P-----~~~~~ilGdi~~tl~~~~~~g~~a~laHaD~G 102 (160)
T PF12692_consen 29 PGPVLELGLGNGRTYDHLREIF-PDRRIYVFDRALACHPSSTP-----PEEDLILGDIRETLPALARFGAGAALAHADIG 102 (160)
T ss_dssp -S-EEEE--TTSHHHHHHHHH---SS-EEEEESS--S-GGG--------GGGEEES-HHHHHHHHHHH-S-EEEEEE---
T ss_pred CCceEEeccCCCccHHHHHHhC-CCCeEEEEeeecccCCCCCC-----chHheeeccHHHHhHHHHhcCCceEEEEeecC
Confidence 3689999999999999999998 67799999964210001111 2234677777554322 112245556666665
Q ss_pred Chh------HHHHHHHHHhccCCCCcEEEEEE
Q 021911 223 QPD------QARILALNASYFLKAGGHFVISI 248 (305)
Q Consensus 223 ~~~------~~~~l~~~a~~~LkpGG~lv~s~ 248 (305)
..+ ....+..-+..+|.|||.++-..
T Consensus 103 ~g~~~~d~a~a~~lspli~~~la~gGi~vS~~ 134 (160)
T PF12692_consen 103 TGDKEKDDATAAWLSPLIAPVLAPGGIMVSGQ 134 (160)
T ss_dssp -S-HHHHHHHHHHHHHHHGGGEEEEEEEEESS
T ss_pred CCCcchhHHHHHhhhHHHHHHhcCCcEEEeCC
Confidence 221 23334445778999999887654
|
|
| >COG0569 TrkA K+ transport systems, NAD-binding component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=85.99 E-value=4.3 Score=35.74 Aligned_cols=87 Identities=16% Similarity=0.192 Sum_probs=58.8
Q ss_pred EEEEEecCCCccHHHHHhhhCCC-cEEEEEeCChHHHHHHHHH-HHcCCCeEEEEccCCCCcccccC-CCcEeEEEEeCC
Q 021911 146 RVLYLGAASGTTVSHVSDIVGPN-GVVYAVEFSHRSGRDLVNM-AKKRTNVIPIIEDARHPAKYRML-VGMVDVIFSDVA 222 (305)
Q Consensus 146 ~VLDlG~G~G~~t~~la~~~~~~-~~V~avD~s~~~~~~l~~~-a~~~~nI~~~~~D~~~~~~~~~~-~~~fD~V~~d~~ 222 (305)
+++-+|| |.+..++|+.+-.. -.|+.+|.++. ..+. +........++.|+++....... ...+|++++...
T Consensus 2 ~iiIiG~--G~vG~~va~~L~~~g~~Vv~Id~d~~----~~~~~~~~~~~~~~v~gd~t~~~~L~~agi~~aD~vva~t~ 75 (225)
T COG0569 2 KIIIIGA--GRVGRSVARELSEEGHNVVLIDRDEE----RVEEFLADELDTHVVIGDATDEDVLEEAGIDDADAVVAATG 75 (225)
T ss_pred EEEEECC--cHHHHHHHHHHHhCCCceEEEEcCHH----HHHHHhhhhcceEEEEecCCCHHHHHhcCCCcCCEEEEeeC
Confidence 4566666 56888888776444 38999999993 3333 33334678899999887654322 468999998887
Q ss_pred ChhHHHHHHHHHhccC
Q 021911 223 QPDQARILALNASYFL 238 (305)
Q Consensus 223 ~~~~~~~l~~~a~~~L 238 (305)
...+.-++..-+.+.+
T Consensus 76 ~d~~N~i~~~la~~~~ 91 (225)
T COG0569 76 NDEVNSVLALLALKEF 91 (225)
T ss_pred CCHHHHHHHHHHHHhc
Confidence 7666666664444444
|
|
| >PRK07806 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=85.50 E-value=8.6 Score=33.45 Aligned_cols=103 Identities=15% Similarity=0.133 Sum_probs=58.9
Q ss_pred CCEEEEEecCCCccHHHHHhhhC-CCcEEEEEeCCh-HHHHHHHHHHHc-CCCeEEEEccCCCCccccc-------CCCc
Q 021911 144 GARVLYLGAASGTTVSHVSDIVG-PNGVVYAVEFSH-RSGRDLVNMAKK-RTNVIPIIEDARHPAKYRM-------LVGM 213 (305)
Q Consensus 144 g~~VLDlG~G~G~~t~~la~~~~-~~~~V~avD~s~-~~~~~l~~~a~~-~~nI~~~~~D~~~~~~~~~-------~~~~ 213 (305)
+.+||-.|+ +|....++++.+- ...+|++++.+. ...+.+.+..+. ..++.++..|+++...... ....
T Consensus 6 ~k~vlItGa-sggiG~~l~~~l~~~G~~V~~~~r~~~~~~~~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~ 84 (248)
T PRK07806 6 GKTALVTGS-SRGIGADTAKILAGAGAHVVVNYRQKAPRANKVVAEIEAAGGRASAVGADLTDEESVAALMDTAREEFGG 84 (248)
T ss_pred CcEEEEECC-CCcHHHHHHHHHHHCCCEEEEEeCCchHhHHHHHHHHHhcCCceEEEEcCCCCHHHHHHHHHHHHHhCCC
Confidence 468888885 4567777776542 334788876653 222333322222 2467888999987653211 1136
Q ss_pred EeEEEEeCCCh----------------hHHHHHHHHHhccCCCCcEEEEEE
Q 021911 214 VDVIFSDVAQP----------------DQARILALNASYFLKAGGHFVISI 248 (305)
Q Consensus 214 fD~V~~d~~~~----------------~~~~~l~~~a~~~LkpGG~lv~s~ 248 (305)
+|+|+.++... -...++. .+...++.++.+++..
T Consensus 85 ~d~vi~~ag~~~~~~~~~~~~~~vn~~~~~~l~~-~~~~~~~~~~~iv~is 134 (248)
T PRK07806 85 LDALVLNASGGMESGMDEDYAMRLNRDAQRNLAR-AALPLMPAGSRVVFVT 134 (248)
T ss_pred CcEEEECCCCCCCCCCCcceeeEeeeHHHHHHHH-HHHhhccCCceEEEEe
Confidence 89888765311 1334444 5666666667776654
|
|
| >PRK08324 short chain dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=85.37 E-value=3.6 Score=42.38 Aligned_cols=79 Identities=16% Similarity=0.213 Sum_probs=50.4
Q ss_pred CCCEEEEEecCCCccHHHHHhhhC-CCcEEEEEeCChHHHHHHHHHHHcCCCeEEEEccCCCCccccc-------CCCcE
Q 021911 143 PGARVLYLGAASGTTVSHVSDIVG-PNGVVYAVEFSHRSGRDLVNMAKKRTNVIPIIEDARHPAKYRM-------LVGMV 214 (305)
Q Consensus 143 ~g~~VLDlG~G~G~~t~~la~~~~-~~~~V~avD~s~~~~~~l~~~a~~~~nI~~~~~D~~~~~~~~~-------~~~~f 214 (305)
++++||-.|+. |....+++..+- ...+|+.+|.++.....+.+......++.++.+|+++...... ....+
T Consensus 421 ~gk~vLVTGas-ggIG~~la~~L~~~Ga~Vvl~~r~~~~~~~~~~~l~~~~~v~~v~~Dvtd~~~v~~~~~~~~~~~g~i 499 (681)
T PRK08324 421 AGKVALVTGAA-GGIGKATAKRLAAEGACVVLADLDEEAAEAAAAELGGPDRALGVACDVTDEAAVQAAFEEAALAFGGV 499 (681)
T ss_pred CCCEEEEecCC-CHHHHHHHHHHHHCcCEEEEEeCCHHHHHHHHHHHhccCcEEEEEecCCCHHHHHHHHHHHHHHcCCC
Confidence 46788888864 456666665442 2358999999986554444433322478889999987643211 12368
Q ss_pred eEEEEeCC
Q 021911 215 DVIFSDVA 222 (305)
Q Consensus 215 D~V~~d~~ 222 (305)
|+||.+..
T Consensus 500 DvvI~~AG 507 (681)
T PRK08324 500 DIVVSNAG 507 (681)
T ss_pred CEEEECCC
Confidence 99998665
|
|
| >PF05711 TylF: Macrocin-O-methyltransferase (TylF); InterPro: IPR008884 This family consists of bacterial macrocin O-methyltransferase (TylF) proteins | Back alignment and domain information |
|---|
Probab=85.22 E-value=4.1 Score=36.53 Aligned_cols=104 Identities=11% Similarity=0.055 Sum_probs=57.9
Q ss_pred CCEEEEEecCCCccHHHHHhhh---C-CCcEEEEEeCC-------h---------------HHHHHHHHHHHcC------
Q 021911 144 GARVLYLGAASGTTVSHVSDIV---G-PNGVVYAVEFS-------H---------------RSGRDLVNMAKKR------ 191 (305)
Q Consensus 144 g~~VLDlG~G~G~~t~~la~~~---~-~~~~V~avD~s-------~---------------~~~~~l~~~a~~~------ 191 (305)
...|+|+||-.|..+..++..+ + +..+|+++|.= . ......++..+++
T Consensus 75 pGdivE~GV~rGgs~~~~~~~l~~~~~~~R~i~lfDSFeG~P~~~~~d~~~d~~~~~~~~~~~~~~s~e~V~~n~~~~gl 154 (248)
T PF05711_consen 75 PGDIVECGVWRGGSSILMRAVLEAYGNPDRRIYLFDSFEGFPEPDEEDYPADKGWEFHEYNGYLAVSLEEVRENFARYGL 154 (248)
T ss_dssp -SEEEEE--TTSHHHHHHHHHHHCTTTTS--EEEEE-SSSSSS--CCCTCCCCHCTCCGCCHHCTHHHHHHHHCCCCTTT
T ss_pred CeEEEEEeeCCCHHHHHHHHHHHHhCCCCCEEEEEeCCCCCCCCccccccccchhhhhhcccccccCHHHHHHHHHHcCC
Confidence 4689999999998776665443 2 34578988741 0 0000112222222
Q ss_pred --CCeEEEEccCCCCcccccCCCcEeEEEEeCCChhHHHHHHHHHhccCCCCcEEEEEE
Q 021911 192 --TNVIPIIEDARHPAKYRMLVGMVDVIFSDVAQPDQARILALNASYFLKAGGHFVISI 248 (305)
Q Consensus 192 --~nI~~~~~D~~~~~~~~~~~~~fD~V~~d~~~~~~~~~l~~~a~~~LkpGG~lv~s~ 248 (305)
.+++++..++.+..+. .....+-++.+|.-..+........++..|.|||++++-.
T Consensus 155 ~~~~v~~vkG~F~dTLp~-~p~~~IAll~lD~DlYesT~~aLe~lyprl~~GGiIi~DD 212 (248)
T PF05711_consen 155 LDDNVRFVKGWFPDTLPD-APIERIALLHLDCDLYESTKDALEFLYPRLSPGGIIIFDD 212 (248)
T ss_dssp SSTTEEEEES-HHHHCCC--TT--EEEEEE---SHHHHHHHHHHHGGGEEEEEEEEESS
T ss_pred CcccEEEECCcchhhhcc-CCCccEEEEEEeccchHHHHHHHHHHHhhcCCCeEEEEeC
Confidence 4799999988544322 2345777888888766655554448999999999999865
|
TylF is responsible for the methylation of macrocin to produce tylosin. Tylosin is a macrolide antibiotic used in veterinary medicine to treat infections caused by Gram-positive bacteria and as an animal growth promoter in the Sus scrofa (Pig) industry. It is produced by several Streptomyces species. As with other macrolides, the antibiotic activity of tylosin is due to the inhibition of protein biosynthesis by a mechanism that involves the binding of tylosin to the ribosome, preventing the formation of the mRNA-aminoacyl-tRNA-ribosome complex [].; PDB: 3TOS_D 2WK1_A. |
| >TIGR03201 dearomat_had 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase | Back alignment and domain information |
|---|
Probab=84.80 E-value=3.6 Score=38.32 Aligned_cols=40 Identities=23% Similarity=0.409 Sum_probs=29.5
Q ss_pred cCCCCCCEEEEEecCC-CccHHHHHhhhCCCcEEEEEeCChHH
Q 021911 139 IWIKPGARVLYLGAAS-GTTVSHVSDIVGPNGVVYAVEFSHRS 180 (305)
Q Consensus 139 ~~~~~g~~VLDlG~G~-G~~t~~la~~~~~~~~V~avD~s~~~ 180 (305)
..++++.+||-+|||+ |..+..+|...+ .+|+++|.++..
T Consensus 162 ~~~~~g~~VlV~G~G~vG~~a~~~a~~~G--~~vi~~~~~~~~ 202 (349)
T TIGR03201 162 AGLKKGDLVIVIGAGGVGGYMVQTAKAMG--AAVVAIDIDPEK 202 (349)
T ss_pred cCCCCCCEEEEECCCHHHHHHHHHHHHcC--CeEEEEcCCHHH
Confidence 3577899999999854 455566677654 379999999844
|
Members of this protein family are 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase, an enzyme in the anaerobic metabolism of aromatic enzymes by way of benzoyl-CoA, as seen in Thauera aromatica, Geobacter metallireducens, and Azoarcus sp. The experimentally characterized form from T. aromatica uses only NAD+, not NADP+. Note that Rhodopseudomonas palustris uses a different pathway to perform a similar degradation of benzoyl-CoA to 3-hydroxpimelyl-CoA. |
| >PF07757 AdoMet_MTase: Predicted AdoMet-dependent methyltransferase; InterPro: IPR011671 tRNA (uracil-O(2)-)-methyltransferase catalyses the formation of O(2)-methyl-uracil at position 44 (m2U44) in tRNA(Ser) [] | Back alignment and domain information |
|---|
Probab=84.63 E-value=1 Score=34.97 Aligned_cols=49 Identities=14% Similarity=0.154 Sum_probs=31.8
Q ss_pred HHHHHHHccccccCCC-CCCEEEEEecCCCccHHHHHhhhCCCcEEEEEeCCh
Q 021911 127 KLAAAVLGGVDNIWIK-PGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSH 178 (305)
Q Consensus 127 ~l~a~ll~~l~~~~~~-~g~~VLDlG~G~G~~t~~la~~~~~~~~V~avD~s~ 178 (305)
.+++.++...+..... +-..-+|||||+|.++-.|... +- .=+++|+-.
T Consensus 41 aIAAyLi~LW~~~~~~~~~~~FVDlGCGNGLLV~IL~~E-Gy--~G~GiD~R~ 90 (112)
T PF07757_consen 41 AIAAYLIELWRDMYGEQKFQGFVDLGCGNGLLVYILNSE-GY--PGWGIDARR 90 (112)
T ss_pred HHHHHHHHHHhcccCCCCCCceEEccCCchHHHHHHHhC-CC--Ccccccccc
Confidence 4555665544444333 4568999999999887777665 22 347888754
|
; GO: 0008168 methyltransferase activity |
| >PF06859 Bin3: Bicoid-interacting protein 3 (Bin3); InterPro: IPR010675 This entry represents a conserved region of approximately 120 residues within eukaryotic Bicoid-interacting protein 3 (Bin3) | Back alignment and domain information |
|---|
Probab=84.57 E-value=0.85 Score=35.51 Aligned_cols=35 Identities=20% Similarity=0.317 Sum_probs=25.0
Q ss_pred cEeEEEEeCCC---------hhHHHHHHHHHhccCCCCcEEEEEE
Q 021911 213 MVDVIFSDVAQ---------PDQARILALNASYFLKAGGHFVISI 248 (305)
Q Consensus 213 ~fD~V~~d~~~---------~~~~~~l~~~a~~~LkpGG~lv~s~ 248 (305)
.||+|+|-... .-....+. .++..|+|||.|++.-
T Consensus 1 ~yDvilclSVtkWIHLn~GD~Gl~~~f~-~~~~~L~pGG~lilEp 44 (110)
T PF06859_consen 1 QYDVILCLSVTKWIHLNWGDEGLKRFFR-RIYSLLRPGGILILEP 44 (110)
T ss_dssp -EEEEEEES-HHHHHHHHHHHHHHHHHH-HHHHHEEEEEEEEEE-
T ss_pred CccEEEEEEeeEEEEecCcCHHHHHHHH-HHHHhhCCCCEEEEeC
Confidence 48999985551 22445565 8999999999999975
|
Bin3, which shows similarity to a number of protein methyltransferases that modify RNA-binding proteins, interacts with Bicoid, which itself directs pattern formation in the early Drosophila embryo. The interaction might allow Bicoid to switch between its dual roles in transcription and translation []. Note that proteins of the entry contain a conserved HLN motif.; GO: 0008168 methyltransferase activity; PDB: 3G07_B. |
| >PLN03154 putative allyl alcohol dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=84.57 E-value=3 Score=38.94 Aligned_cols=97 Identities=21% Similarity=0.250 Sum_probs=56.6
Q ss_pred CCCCCCEEEEEec--CCCccHHHHHhhhCCCcEEEEEeCChHHHHHHHHHHHcCCCeE-EEEccCC-CCcc-c-ccCCCc
Q 021911 140 WIKPGARVLYLGA--ASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKRTNVI-PIIEDAR-HPAK-Y-RMLVGM 213 (305)
Q Consensus 140 ~~~~g~~VLDlG~--G~G~~t~~la~~~~~~~~V~avD~s~~~~~~l~~~a~~~~nI~-~~~~D~~-~~~~-~-~~~~~~ 213 (305)
.++++++||-.|+ +.|..+..+|+..+ .+|++++.++.. .+.+++.-.+. .+..+-. .... . ......
T Consensus 155 ~~~~g~~VlV~GaaG~vG~~aiqlAk~~G--~~Vi~~~~~~~k----~~~~~~~lGa~~vi~~~~~~~~~~~i~~~~~~g 228 (348)
T PLN03154 155 SPKKGDSVFVSAASGAVGQLVGQLAKLHG--CYVVGSAGSSQK----VDLLKNKLGFDEAFNYKEEPDLDAALKRYFPEG 228 (348)
T ss_pred CCCCCCEEEEecCccHHHHHHHHHHHHcC--CEEEEEcCCHHH----HHHHHHhcCCCEEEECCCcccHHHHHHHHCCCC
Confidence 5778999999987 36667788888864 479999988733 33332111111 1111100 1110 0 011236
Q ss_pred EeEEEEeCCChhHHHHHHHHHhccCCCCcEEEEE
Q 021911 214 VDVIFSDVAQPDQARILALNASYFLKAGGHFVIS 247 (305)
Q Consensus 214 fD~V~~d~~~~~~~~~l~~~a~~~LkpGG~lv~s 247 (305)
+|+|+-.... ..+. .+.+.|+++|++++.
T Consensus 229 vD~v~d~vG~----~~~~-~~~~~l~~~G~iv~~ 257 (348)
T PLN03154 229 IDIYFDNVGG----DMLD-AALLNMKIHGRIAVC 257 (348)
T ss_pred cEEEEECCCH----HHHH-HHHHHhccCCEEEEE
Confidence 8999854442 2344 677899999999864
|
|
| >PF01210 NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus; InterPro: IPR011128 NAD-dependent glycerol-3-phosphate dehydrogenase (GPDH) catalyses the interconversion of dihydroxyacetone phosphate and L-glycerol-3-phosphate | Back alignment and domain information |
|---|
Probab=84.50 E-value=2.3 Score=35.10 Aligned_cols=93 Identities=16% Similarity=0.224 Sum_probs=52.3
Q ss_pred EEEEecCCCccHHHHHhhhCCC-cEEEEEeCChHHHHHHHHHHHcC---------CCeEEEEccCCCCcccccCCCcEeE
Q 021911 147 VLYLGAASGTTVSHVSDIVGPN-GVVYAVEFSHRSGRDLVNMAKKR---------TNVIPIIEDARHPAKYRMLVGMVDV 216 (305)
Q Consensus 147 VLDlG~G~G~~t~~la~~~~~~-~~V~avD~s~~~~~~l~~~a~~~---------~nI~~~~~D~~~~~~~~~~~~~fD~ 216 (305)
|.-+|+ |.+...+|..+... .+|+-...++..++.+.+.-... .++. +..|..+ .....|+
T Consensus 2 I~ViGa--G~~G~AlA~~la~~g~~V~l~~~~~~~~~~i~~~~~n~~~~~~~~l~~~i~-~t~dl~~------a~~~ad~ 72 (157)
T PF01210_consen 2 IAVIGA--GNWGTALAALLADNGHEVTLWGRDEEQIEEINETRQNPKYLPGIKLPENIK-ATTDLEE------ALEDADI 72 (157)
T ss_dssp EEEESS--SHHHHHHHHHHHHCTEEEEEETSCHHHHHHHHHHTSETTTSTTSBEETTEE-EESSHHH------HHTT-SE
T ss_pred EEEECc--CHHHHHHHHHHHHcCCEEEEEeccHHHHHHHHHhCCCCCCCCCcccCcccc-cccCHHH------HhCcccE
Confidence 444455 55555555544333 37888888885554444332211 1332 2222211 1357799
Q ss_pred EEEeCCChhHHHHHHHHHhccCCCCcEEEEEEc
Q 021911 217 IFSDVAQPDQARILALNASYFLKAGGHFVISIK 249 (305)
Q Consensus 217 V~~d~~~~~~~~~l~~~a~~~LkpGG~lv~s~~ 249 (305)
|+...|......++. ++..+|+++=.+++.++
T Consensus 73 IiiavPs~~~~~~~~-~l~~~l~~~~~ii~~~K 104 (157)
T PF01210_consen 73 IIIAVPSQAHREVLE-QLAPYLKKGQIIISATK 104 (157)
T ss_dssp EEE-S-GGGHHHHHH-HHTTTSHTT-EEEETS-
T ss_pred EEecccHHHHHHHHH-HHhhccCCCCEEEEecC
Confidence 999999888888888 99999988866665543
|
This family represents the N-terminal NAD-binding domain [].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0046168 glycerol-3-phosphate catabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 1YJ8_B 2PLA_A 1WPQ_B 1X0V_A 1X0X_A 1BG6_A 1TXG_B 1N1G_A 1M67_A 1JDJ_A .... |
| >PRK07576 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=84.29 E-value=5.1 Score=35.61 Aligned_cols=78 Identities=17% Similarity=0.191 Sum_probs=49.4
Q ss_pred CCCEEEEEecCCCccHHHHHhhhC-CCcEEEEEeCChHHHHHHHHHHHcC-CCeEEEEccCCCCccccc-------CCCc
Q 021911 143 PGARVLYLGAASGTTVSHVSDIVG-PNGVVYAVEFSHRSGRDLVNMAKKR-TNVIPIIEDARHPAKYRM-------LVGM 213 (305)
Q Consensus 143 ~g~~VLDlG~G~G~~t~~la~~~~-~~~~V~avD~s~~~~~~l~~~a~~~-~nI~~~~~D~~~~~~~~~-------~~~~ 213 (305)
++.+||-.|+ +|....++++.+- ...+|+.++.++.....+.+..... .++.++..|+++...... ....
T Consensus 8 ~~k~ilItGa-sggIG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~i~~~~~~~~~~~~~ 86 (264)
T PRK07576 8 AGKNVVVVGG-TSGINLGIAQAFARAGANVAVASRSQEKVDAAVAQLQQAGPEGLGVSADVRDYAAVEAAFAQIADEFGP 86 (264)
T ss_pred CCCEEEEECC-CchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHHhCCceEEEECCCCCHHHHHHHHHHHHHHcCC
Confidence 4678888885 5566776665442 3458999998876555544333332 467788899987543211 1246
Q ss_pred EeEEEEeC
Q 021911 214 VDVIFSDV 221 (305)
Q Consensus 214 fD~V~~d~ 221 (305)
+|+|+.+.
T Consensus 87 iD~vi~~a 94 (264)
T PRK07576 87 IDVLVSGA 94 (264)
T ss_pred CCEEEECC
Confidence 79998765
|
|
| >COG1255 Uncharacterized protein conserved in archaea [Function unknown] | Back alignment and domain information |
|---|
Probab=84.23 E-value=10 Score=29.84 Aligned_cols=88 Identities=16% Similarity=0.166 Sum_probs=56.6
Q ss_pred CEEEEEecCCCccHHHHHhhhCCCcEEEEEeCChHHHHHHHHHHHcCCCeEEEEccCCCCcccccCCCcEeEEEEeCCCh
Q 021911 145 ARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKRTNVIPIIEDARHPAKYRMLVGMVDVIFSDVAQP 224 (305)
Q Consensus 145 ~~VLDlG~G~G~~t~~la~~~~~~~~V~avD~s~~~~~~l~~~a~~~~nI~~~~~D~~~~~~~~~~~~~fD~V~~d~~~~ 224 (305)
.+|+++|.|-=......... ..+.|+++|+.+. .+. ..+.++.-|++++... .....|+|.+--|.|
T Consensus 15 gkVvEVGiG~~~~VA~~L~e--~g~dv~atDI~~~-------~a~--~g~~~v~DDitnP~~~--iY~~A~lIYSiRppp 81 (129)
T COG1255 15 GKVVEVGIGFFLDVAKRLAE--RGFDVLATDINEK-------TAP--EGLRFVVDDITNPNIS--IYEGADLIYSIRPPP 81 (129)
T ss_pred CcEEEEccchHHHHHHHHHH--cCCcEEEEecccc-------cCc--ccceEEEccCCCccHH--HhhCccceeecCCCH
Confidence 49999998653322222222 2368999999982 222 5788999999987532 246789999876766
Q ss_pred hHHHHHHHHHhccCCCCcEEEEEE
Q 021911 225 DQARILALNASYFLKAGGHFVISI 248 (305)
Q Consensus 225 ~~~~~l~~~a~~~LkpGG~lv~s~ 248 (305)
+....+. .+.+.++.. +++..
T Consensus 82 El~~~il-dva~aVga~--l~I~p 102 (129)
T COG1255 82 ELQSAIL-DVAKAVGAP--LYIKP 102 (129)
T ss_pred HHHHHHH-HHHHhhCCC--EEEEe
Confidence 6555555 555555553 55543
|
|
| >PRK05872 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=84.23 E-value=7.9 Score=35.15 Aligned_cols=79 Identities=16% Similarity=0.216 Sum_probs=49.7
Q ss_pred CCCEEEEEecCCCccHHHHHhhhC-CCcEEEEEeCChHHHHHHHHHHHcCCCeEEEEccCCCCccccc-------CCCcE
Q 021911 143 PGARVLYLGAASGTTVSHVSDIVG-PNGVVYAVEFSHRSGRDLVNMAKKRTNVIPIIEDARHPAKYRM-------LVGMV 214 (305)
Q Consensus 143 ~g~~VLDlG~G~G~~t~~la~~~~-~~~~V~avD~s~~~~~~l~~~a~~~~nI~~~~~D~~~~~~~~~-------~~~~f 214 (305)
.+.+||-.|+.. ....++++.+. ...+|+.++.++..++++.+.......+..+.+|+++...... ....+
T Consensus 8 ~gk~vlItGas~-gIG~~ia~~l~~~G~~V~~~~r~~~~l~~~~~~l~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~g~i 86 (296)
T PRK05872 8 AGKVVVVTGAAR-GIGAELARRLHARGAKLALVDLEEAELAALAAELGGDDRVLTVVADVTDLAAMQAAAEEAVERFGGI 86 (296)
T ss_pred CCCEEEEECCCc-hHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhcCCCcEEEEEecCCCHHHHHHHHHHHHHHcCCC
Confidence 467888888654 56666666542 3358999998886555554444323456666789887643211 12578
Q ss_pred eEEEEeCC
Q 021911 215 DVIFSDVA 222 (305)
Q Consensus 215 D~V~~d~~ 222 (305)
|+|+.+..
T Consensus 87 d~vI~nAG 94 (296)
T PRK05872 87 DVVVANAG 94 (296)
T ss_pred CEEEECCC
Confidence 99998765
|
|
| >PF01555 N6_N4_Mtase: DNA methylase; InterPro: IPR002941 This domain is found in DNA methylases | Back alignment and domain information |
|---|
Probab=84.14 E-value=1.8 Score=37.13 Aligned_cols=34 Identities=32% Similarity=0.399 Sum_probs=23.3
Q ss_pred EeEEEEeCC-----C-----------------hhHHHHHHHHHhccCCCCcEEEEEE
Q 021911 214 VDVIFSDVA-----Q-----------------PDQARILALNASYFLKAGGHFVISI 248 (305)
Q Consensus 214 fD~V~~d~~-----~-----------------~~~~~~l~~~a~~~LkpGG~lv~s~ 248 (305)
+|+|+.|+| . ......+. ++.++|||+|.+++.+
T Consensus 1 VdliitDPPY~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~-~~~rvLk~~g~~~i~~ 56 (231)
T PF01555_consen 1 VDLIITDPPYNIGKDYNNYFDYGDNKNHEEYLEWMEEWLK-ECYRVLKPGGSIFIFI 56 (231)
T ss_dssp EEEEEE---TSSSCS-----CSCHCCHHHHHHHHHHHHHH-HHHHHEEEEEEEEEEE
T ss_pred CCEEEECCCCCCCCCcchhhhccCCCCHHHHHHHHHHHHH-HHHhhcCCCeeEEEEe
Confidence 588888888 1 12344555 8999999999999986
|
In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. This family contains both N-4 cytosine-specific DNA methylases and N-6 Adenine-specific DNA methylases. N-4 cytosine-specific DNA methylases (2.1.1.113 from EC) [] are enzymes that specifically methylate the amino group at the C-4 position of cytosines in DNA. Such enzymes are found as components of type II restriction-modification systems in prokaryotes. Such enzymes recognise a specific sequence in DNA and methylate a cytosine in that sequence. By this action they protect DNA from cleavage by type II restriction enzymes that recognise the same sequence. N-6 adenine-specific DNA methylases (2.1.1.72 from EC) (A-Mtase) are enzymes that specifically methylate the amino group at the C-6 position of adenines in DNA. Such enzymes are found in the three existing types of bacterial restriction-modification systems (in type I system the A-Mtase is the product of the hsdM gene, and in type III it is the product of the mod gene). All of these enzymes recognise a specific sequence in DNA and methylate an adenine in that sequence.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2ZIF_A 2ZIE_A 2ZIG_A 1NW6_A 1NW8_A 1NW7_A 1NW5_A 1EG2_A 1BOO_A 1G60_B .... |
| >PLN02896 cinnamyl-alcohol dehydrogenase | Back alignment and domain information |
|---|
Probab=84.03 E-value=3.2 Score=38.69 Aligned_cols=79 Identities=16% Similarity=0.078 Sum_probs=50.6
Q ss_pred CCCEEEEEecCCCccHHHHHhhhCC-CcEEEEEeCChHHHHHHHHHHHcCCCeEEEEccCCCCcccccCCCcEeEEEEeC
Q 021911 143 PGARVLYLGAASGTTVSHVSDIVGP-NGVVYAVEFSHRSGRDLVNMAKKRTNVIPIIEDARHPAKYRMLVGMVDVIFSDV 221 (305)
Q Consensus 143 ~g~~VLDlG~G~G~~t~~la~~~~~-~~~V~avD~s~~~~~~l~~~a~~~~nI~~~~~D~~~~~~~~~~~~~fD~V~~d~ 221 (305)
.+++||=.|+ +|....++++.+-. ...|++++.++.....+........+++++..|+++..........+|.||..+
T Consensus 9 ~~~~vLVtG~-~GfIG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~d~Vih~A 87 (353)
T PLN02896 9 ATGTYCVTGA-TGYIGSWLVKLLLQRGYTVHATLRDPAKSLHLLSKWKEGDRLRLFRADLQEEGSFDEAVKGCDGVFHVA 87 (353)
T ss_pred CCCEEEEECC-CcHHHHHHHHHHHHCCCEEEEEeCChHHHHHHHHhhccCCeEEEEECCCCCHHHHHHHHcCCCEEEECC
Confidence 4678998884 78899999886632 347888877654333333322223568899999987654322234579888644
Q ss_pred C
Q 021911 222 A 222 (305)
Q Consensus 222 ~ 222 (305)
.
T Consensus 88 ~ 88 (353)
T PLN02896 88 A 88 (353)
T ss_pred c
Confidence 3
|
|
| >cd08232 idonate-5-DH L-idonate 5-dehydrogenase | Back alignment and domain information |
|---|
Probab=83.83 E-value=7 Score=35.87 Aligned_cols=97 Identities=25% Similarity=0.291 Sum_probs=52.5
Q ss_pred CCCEEEEEecCC-CccHHHHHhhhCCCcEEEEEeCChHHHHHHHHHHHcCCCeEEEEccCCCCcccccCCCcEeEEEEeC
Q 021911 143 PGARVLYLGAAS-GTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKRTNVIPIIEDARHPAKYRMLVGMVDVIFSDV 221 (305)
Q Consensus 143 ~g~~VLDlG~G~-G~~t~~la~~~~~~~~V~avD~s~~~~~~l~~~a~~~~nI~~~~~D~~~~~~~~~~~~~fD~V~~d~ 221 (305)
++.+||..+|+. |..+..+|+..+. ..|++++.+++.. +.+++..--.++..+-............+|+|+...
T Consensus 165 ~~~~VLI~g~g~vG~~~~~lak~~G~-~~v~~~~~s~~~~----~~~~~~g~~~vi~~~~~~~~~~~~~~~~vd~vld~~ 239 (339)
T cd08232 165 AGKRVLVTGAGPIGALVVAAARRAGA-AEIVATDLADAPL----AVARAMGADETVNLARDPLAAYAADKGDFDVVFEAS 239 (339)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCC-cEEEEECCCHHHH----HHHHHcCCCEEEcCCchhhhhhhccCCCccEEEECC
Confidence 788999987654 4456667776532 2688998887433 233322111111111000111100123599998755
Q ss_pred CChhHHHHHHHHHhccCCCCcEEEEEE
Q 021911 222 AQPDQARILALNASYFLKAGGHFVISI 248 (305)
Q Consensus 222 ~~~~~~~~l~~~a~~~LkpGG~lv~s~ 248 (305)
.... .+. .+.+.|+++|+++...
T Consensus 240 g~~~---~~~-~~~~~L~~~G~~v~~g 262 (339)
T cd08232 240 GAPA---ALA-SALRVVRPGGTVVQVG 262 (339)
T ss_pred CCHH---HHH-HHHHHHhcCCEEEEEe
Confidence 4322 233 6678999999998653
|
L-idonate 5-dehydrogenase (L-ido 5-DH ) catalyzes the conversion of L-lodonate to 5-ketogluconate in the metabolism of L-Idonate to 6-P-gluconate. In E. coli, this GntII pathway is a subsidiary pathway to the canonical GntI system, which also phosphorylates and transports gluconate. L-ido 5-DH is found in an operon with a regulator indR, transporter idnT, 5-keto-D-gluconate 5-reductase, and Gnt kinase. L-ido 5-DH is a zinc-dependent alcohol dehydrogenase-like protein. The alcohol dehydrogenase ADH-like family of proteins is a diverse group of proteins related to the first identified member, class I mammalian ADH. This group is also called the medium chain dehydrogenases/reductase family (MDR) which displays a broad range of activities and are distinguished from the smaller short chain dehydrogenases(~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domai |
| >KOG1201 consensus Hydroxysteroid 17-beta dehydrogenase 11 [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=83.61 E-value=23 Score=32.59 Aligned_cols=77 Identities=17% Similarity=0.233 Sum_probs=56.3
Q ss_pred CCCEEEEEecCCCc---cHHHHHhhhCCCcEEEEEeCChHHHHHHHHHHHcCCCeEEEEccCCCCccc-------ccCCC
Q 021911 143 PGARVLYLGAASGT---TVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKRTNVIPIIEDARHPAKY-------RMLVG 212 (305)
Q Consensus 143 ~g~~VLDlG~G~G~---~t~~la~~~~~~~~V~avD~s~~~~~~l~~~a~~~~nI~~~~~D~~~~~~~-------~~~~~ 212 (305)
.+..||--|+|+|. .++++|++ .+.++.+|+++....+..+..++...++..++|+.+..+. ....+
T Consensus 37 ~g~~vLITGgg~GlGr~ialefa~r---g~~~vl~Din~~~~~etv~~~~~~g~~~~y~cdis~~eei~~~a~~Vk~e~G 113 (300)
T KOG1201|consen 37 SGEIVLITGGGSGLGRLIALEFAKR---GAKLVLWDINKQGNEETVKEIRKIGEAKAYTCDISDREEIYRLAKKVKKEVG 113 (300)
T ss_pred cCCEEEEeCCCchHHHHHHHHHHHh---CCeEEEEeccccchHHHHHHHHhcCceeEEEecCCCHHHHHHHHHHHHHhcC
Confidence 37899999999885 44455554 3468888999877777777776545688999999887542 12346
Q ss_pred cEeEEEEeCC
Q 021911 213 MVDVIFSDVA 222 (305)
Q Consensus 213 ~fD~V~~d~~ 222 (305)
.+|+++.|+.
T Consensus 114 ~V~ILVNNAG 123 (300)
T KOG1201|consen 114 DVDILVNNAG 123 (300)
T ss_pred CceEEEeccc
Confidence 8999998776
|
|
| >cd08255 2-desacetyl-2-hydroxyethyl_bacteriochlorophyllide_like 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide and other MDR family members | Back alignment and domain information |
|---|
Probab=83.55 E-value=6.6 Score=34.82 Aligned_cols=95 Identities=19% Similarity=0.237 Sum_probs=53.1
Q ss_pred CCCCCCEEEEEecCC-CccHHHHHhhhCCCcEEEEEeCChHHHHHHHHHHHcCCCeEEEEccCCCCcccccCCCcEeEEE
Q 021911 140 WIKPGARVLYLGAAS-GTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKRTNVIPIIEDARHPAKYRMLVGMVDVIF 218 (305)
Q Consensus 140 ~~~~g~~VLDlG~G~-G~~t~~la~~~~~~~~V~avD~s~~~~~~l~~~a~~~~nI~~~~~D~~~~~~~~~~~~~fD~V~ 218 (305)
.+.++.+||-.|||. |..+..+|+..+.. .|++++.++... +.+++..-...+ .+... .......+|+|+
T Consensus 94 ~~~~g~~vlI~g~g~vg~~~i~~a~~~g~~-~vi~~~~~~~~~----~~~~~~g~~~~~-~~~~~---~~~~~~~~d~vl 164 (277)
T cd08255 94 EPRLGERVAVVGLGLVGLLAAQLAKAAGAR-EVVGVDPDAARR----ELAEALGPADPV-AADTA---DEIGGRGADVVI 164 (277)
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHcCCC-cEEEECCCHHHH----HHHHHcCCCccc-cccch---hhhcCCCCCEEE
Confidence 567889999987653 44556667765422 399999887432 333332100000 00000 000124689998
Q ss_pred EeCCChhHHHHHHHHHhccCCCCcEEEEE
Q 021911 219 SDVAQPDQARILALNASYFLKAGGHFVIS 247 (305)
Q Consensus 219 ~d~~~~~~~~~l~~~a~~~LkpGG~lv~s 247 (305)
....... .+. .+.+.|+++|+++..
T Consensus 165 ~~~~~~~---~~~-~~~~~l~~~g~~~~~ 189 (277)
T cd08255 165 EASGSPS---ALE-TALRLLRDRGRVVLV 189 (277)
T ss_pred EccCChH---HHH-HHHHHhcCCcEEEEE
Confidence 6544332 233 566789999998764
|
This subgroup of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family has members identified as 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase and alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MD |
| >PRK06701 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=83.54 E-value=6.8 Score=35.52 Aligned_cols=79 Identities=15% Similarity=0.203 Sum_probs=45.9
Q ss_pred CCCEEEEEecCCCccHHHHHhhhC-CCcEEEEEeCChH-HHHHHHHHHHcC-CCeEEEEccCCCCcccccC-------CC
Q 021911 143 PGARVLYLGAASGTTVSHVSDIVG-PNGVVYAVEFSHR-SGRDLVNMAKKR-TNVIPIIEDARHPAKYRML-------VG 212 (305)
Q Consensus 143 ~g~~VLDlG~G~G~~t~~la~~~~-~~~~V~avD~s~~-~~~~l~~~a~~~-~nI~~~~~D~~~~~~~~~~-------~~ 212 (305)
.+++||-.|+ ++....+++..+- ...+|+.++.++. ....+.+..+.. .++.++.+|+.+......+ ..
T Consensus 45 ~~k~iLItGa-sggIG~~la~~l~~~G~~V~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~i~~~~~ 123 (290)
T PRK06701 45 KGKVALITGG-DSGIGRAVAVLFAKEGADIAIVYLDEHEDANETKQRVEKEGVKCLLIPGDVSDEAFCKDAVEETVRELG 123 (290)
T ss_pred CCCEEEEeCC-CcHHHHHHHHHHHHCCCEEEEEeCCcchHHHHHHHHHHhcCCeEEEEEccCCCHHHHHHHHHHHHHHcC
Confidence 3578888886 4456666665542 3457888877642 222332333222 4688899999876532111 13
Q ss_pred cEeEEEEeCC
Q 021911 213 MVDVIFSDVA 222 (305)
Q Consensus 213 ~fD~V~~d~~ 222 (305)
.+|+||.++.
T Consensus 124 ~iD~lI~~Ag 133 (290)
T PRK06701 124 RLDILVNNAA 133 (290)
T ss_pred CCCEEEECCc
Confidence 6899886543
|
|
| >PRK07533 enoyl-(acyl carrier protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=83.27 E-value=14 Score=32.76 Aligned_cols=80 Identities=16% Similarity=0.203 Sum_probs=49.3
Q ss_pred CCCEEEEEecCCC-ccHHHHHhhhC-CCcEEEEEeCChHHHHHHHHHHHcCCCeEEEEccCCCCccccc-------CCCc
Q 021911 143 PGARVLYLGAASG-TTVSHVSDIVG-PNGVVYAVEFSHRSGRDLVNMAKKRTNVIPIIEDARHPAKYRM-------LVGM 213 (305)
Q Consensus 143 ~g~~VLDlG~G~G-~~t~~la~~~~-~~~~V~avD~s~~~~~~l~~~a~~~~nI~~~~~D~~~~~~~~~-------~~~~ 213 (305)
.+..+|-.|+++| .....+|..+- ...+|+.++.+++..+.+.+.+++...+.++.+|+.+...... ....
T Consensus 9 ~~k~~lItGas~g~GIG~a~a~~la~~G~~v~l~~r~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~g~ 88 (258)
T PRK07533 9 AGKRGLVVGIANEQSIAWGCARAFRALGAELAVTYLNDKARPYVEPLAEELDAPIFLPLDVREPGQLEAVFARIAEEWGR 88 (258)
T ss_pred CCCEEEEECCCCCCcHHHHHHHHHHHcCCEEEEEeCChhhHHHHHHHHHhhccceEEecCcCCHHHHHHHHHHHHHHcCC
Confidence 4678999998873 67777776542 2357888888754322233333332345678899887643211 1257
Q ss_pred EeEEEEeCC
Q 021911 214 VDVIFSDVA 222 (305)
Q Consensus 214 fD~V~~d~~ 222 (305)
+|+++.++.
T Consensus 89 ld~lv~nAg 97 (258)
T PRK07533 89 LDFLLHSIA 97 (258)
T ss_pred CCEEEEcCc
Confidence 899987653
|
|
| >PRK12939 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=83.17 E-value=8.7 Score=33.32 Aligned_cols=79 Identities=18% Similarity=0.228 Sum_probs=51.1
Q ss_pred CCCEEEEEecCCCccHHHHHhhhC-CCcEEEEEeCChHHHHHHHHHHHcC-CCeEEEEccCCCCcccccC-------CCc
Q 021911 143 PGARVLYLGAASGTTVSHVSDIVG-PNGVVYAVEFSHRSGRDLVNMAKKR-TNVIPIIEDARHPAKYRML-------VGM 213 (305)
Q Consensus 143 ~g~~VLDlG~G~G~~t~~la~~~~-~~~~V~avD~s~~~~~~l~~~a~~~-~nI~~~~~D~~~~~~~~~~-------~~~ 213 (305)
++.+||-.|+ +|....++++.+- ...+|+.++.++.....+.+..+.. .++.++++|+++......+ ...
T Consensus 6 ~~~~vlItGa-~g~iG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~~~ 84 (250)
T PRK12939 6 AGKRALVTGA-ARGLGAAFAEALAEAGATVAFNDGLAAEARELAAALEAAGGRAHAIAADLADPASVQRFFDAAAAALGG 84 (250)
T ss_pred CCCEEEEeCC-CChHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhcCCcEEEEEccCCCHHHHHHHHHHHHHHcCC
Confidence 3578887775 6778888887653 2357888888875555554443332 4688999999876532111 146
Q ss_pred EeEEEEeCC
Q 021911 214 VDVIFSDVA 222 (305)
Q Consensus 214 fD~V~~d~~ 222 (305)
+|+|+.+..
T Consensus 85 id~vi~~ag 93 (250)
T PRK12939 85 LDGLVNNAG 93 (250)
T ss_pred CCEEEECCC
Confidence 899987654
|
|
| >PRK09496 trkA potassium transporter peripheral membrane component; Reviewed | Back alignment and domain information |
|---|
Probab=82.69 E-value=6.5 Score=37.96 Aligned_cols=95 Identities=12% Similarity=0.094 Sum_probs=59.2
Q ss_pred CCEEEEEecCCCccHHHHHhhhCC-CcEEEEEeCChHHHHHHHHHHHcC-CCeEEEEccCCCCccc-ccCCCcEeEEEEe
Q 021911 144 GARVLYLGAASGTTVSHVSDIVGP-NGVVYAVEFSHRSGRDLVNMAKKR-TNVIPIIEDARHPAKY-RMLVGMVDVIFSD 220 (305)
Q Consensus 144 g~~VLDlG~G~G~~t~~la~~~~~-~~~V~avD~s~~~~~~l~~~a~~~-~nI~~~~~D~~~~~~~-~~~~~~fD~V~~d 220 (305)
..+||=+|+ |.++..+++.+.. ...|+.+|.++.. .+.+.+. .++.++.+|+.+...+ ......+|.|++.
T Consensus 231 ~~~iiIiG~--G~~g~~l~~~L~~~~~~v~vid~~~~~----~~~~~~~~~~~~~i~gd~~~~~~L~~~~~~~a~~vi~~ 304 (453)
T PRK09496 231 VKRVMIVGG--GNIGYYLAKLLEKEGYSVKLIERDPER----AEELAEELPNTLVLHGDGTDQELLEEEGIDEADAFIAL 304 (453)
T ss_pred CCEEEEECC--CHHHHHHHHHHHhCCCeEEEEECCHHH----HHHHHHHCCCCeEEECCCCCHHHHHhcCCccCCEEEEC
Confidence 467777666 7788888887643 4589999999943 3333332 4678899999876543 1234688999876
Q ss_pred CCChhHHHHHHHHHhccCCCCcEEEE
Q 021911 221 VAQPDQARILALNASYFLKAGGHFVI 246 (305)
Q Consensus 221 ~~~~~~~~~l~~~a~~~LkpGG~lv~ 246 (305)
.+......+.. ...+.+.+. .++.
T Consensus 305 ~~~~~~n~~~~-~~~~~~~~~-~ii~ 328 (453)
T PRK09496 305 TNDDEANILSS-LLAKRLGAK-KVIA 328 (453)
T ss_pred CCCcHHHHHHH-HHHHHhCCC-eEEE
Confidence 66543333333 333445554 4443
|
|
| >PF11312 DUF3115: Protein of unknown function (DUF3115); InterPro: IPR021463 This eukaryotic family of proteins has no known function | Back alignment and domain information |
|---|
Probab=82.57 E-value=3.8 Score=37.89 Aligned_cols=128 Identities=17% Similarity=0.201 Sum_probs=73.6
Q ss_pred ecCchhhHHHHHHHcccc----ccCC----------CCCCEEEEEecCCCccHHHHHhhh-------------------C
Q 021911 120 IWNPFRSKLAAAVLGGVD----NIWI----------KPGARVLYLGAASGTTVSHVSDIV-------------------G 166 (305)
Q Consensus 120 ~~~~~~s~l~a~ll~~l~----~~~~----------~~g~~VLDlG~G~G~~t~~la~~~-------------------~ 166 (305)
.|.|.++--.+.++..|. .+.. ++..+||-||-|.|.-...+|..+ .
T Consensus 49 RWSPsRAL~Yaslf~~l~~~l~~~~~~~~~~~~~~~~~~~~VlCIGGGAGAElVAlAa~~~~~~~~~~s~~~~~~~~~~~ 128 (315)
T PF11312_consen 49 RWSPSRALAYASLFASLKEHLELLSCPEDESDEDEEKKSLRVLCIGGGAGAELVALAAAFRTRSSEFLSKSPSGVSLSSP 128 (315)
T ss_pred ccCHHHHHHHHHHHHHHHHHHHhhccccccccccccccCceEEEECCChHHHHHHHHHHHhhcccccCCcccccccccCC
Confidence 488877655555443322 1111 123699999999998777777766 0
Q ss_pred CCcEEEEEeCChHH--HHHHHHHHHcC-------------------CCeEEEEccCCCCcccc---cCC-CcEeEEEEeC
Q 021911 167 PNGVVYAVEFSHRS--GRDLVNMAKKR-------------------TNVIPIIEDARHPAKYR---MLV-GMVDVIFSDV 221 (305)
Q Consensus 167 ~~~~V~avD~s~~~--~~~l~~~a~~~-------------------~nI~~~~~D~~~~~~~~---~~~-~~fD~V~~d~ 221 (305)
+...|+.||+.+.. +..+....... -++.|.+.|+....... .+. ...|+|.+-+
T Consensus 129 ~~l~itlvDiAdWs~VV~~L~~~i~s~p~~sk~a~~~~~~~~~~~~~~~~F~~~DvL~~~~~~l~~ll~~~~~~LITLlF 208 (315)
T PF11312_consen 129 PSLSITLVDIADWSSVVDRLTTTITSPPPLSKYASAANWPLIEPDRFNVSFTQQDVLSLSEDDLKSLLGPPSPDLITLLF 208 (315)
T ss_pred CcceEEEEEecChHHHHHHHHHhccCCCCccccccccccccCCccceeeeEEecccccCChHHHHHHhccchhHHHHHHH
Confidence 12489999998654 12222111111 25678888886664321 001 1234443211
Q ss_pred C--------ChhHHHHHHHHHhccCCCCcEEEEEE
Q 021911 222 A--------QPDQARILALNASYFLKAGGHFVISI 248 (305)
Q Consensus 222 ~--------~~~~~~~l~~~a~~~LkpGG~lv~s~ 248 (305)
. .+.-.+.|. +....++||-.|+|+.
T Consensus 209 TlNELfs~s~~kTt~FLl-~Lt~~~~~GslLLVvD 242 (315)
T PF11312_consen 209 TLNELFSTSISKTTKFLL-RLTDICPPGSLLLVVD 242 (315)
T ss_pred HHHHHHhcChHHHHHHHH-HHHhhcCCCcEEEEEc
Confidence 1 234445555 8999999999988876
|
|
| >PLN02819 lysine-ketoglutarate reductase/saccharopine dehydrogenase | Back alignment and domain information |
|---|
Probab=81.84 E-value=8 Score=41.74 Aligned_cols=83 Identities=17% Similarity=0.184 Sum_probs=50.1
Q ss_pred CCEEEEEecCCCccHHHHHhhhC--CCcE-------------EEEEeCChHHHHHHHHHHHcCCCeEEEEccCCCCcccc
Q 021911 144 GARVLYLGAASGTTVSHVSDIVG--PNGV-------------VYAVEFSHRSGRDLVNMAKKRTNVIPIIEDARHPAKYR 208 (305)
Q Consensus 144 g~~VLDlG~G~G~~t~~la~~~~--~~~~-------------V~avD~s~~~~~~l~~~a~~~~nI~~~~~D~~~~~~~~ 208 (305)
..+||=|||| ..+..+++.+. +... |+.+|.++...+ +.++..+++..+..|+.+.....
T Consensus 569 ~~rIlVLGAG--~VG~~~a~~La~~~~~~~~~~~~~~~~~~lV~VaD~~~~~a~---~la~~~~~~~~v~lDv~D~e~L~ 643 (1042)
T PLN02819 569 SQNVLILGAG--RVCRPAAEYLASVKTISYYGDDSEEPTDVHVIVASLYLKDAK---ETVEGIENAEAVQLDVSDSESLL 643 (1042)
T ss_pred CCcEEEECCC--HHHHHHHHHHHhCcCccccccccccccccEEEEECCCHHHHH---HHHHhcCCCceEEeecCCHHHHH
Confidence 4689999985 44444444331 2222 777799874333 33333357888888887765443
Q ss_pred cCCCcEeEEEEeCCChhHHHHHH
Q 021911 209 MLVGMVDVIFSDVAQPDQARILA 231 (305)
Q Consensus 209 ~~~~~fD~V~~d~~~~~~~~~l~ 231 (305)
.....+|+|++..|......+..
T Consensus 644 ~~v~~~DaVIsalP~~~H~~VAk 666 (1042)
T PLN02819 644 KYVSQVDVVISLLPASCHAVVAK 666 (1042)
T ss_pred HhhcCCCEEEECCCchhhHHHHH
Confidence 22346999999888554444333
|
|
| >cd08239 THR_DH_like L-threonine dehydrogenase (TDH)-like | Back alignment and domain information |
|---|
Probab=81.74 E-value=6 Score=36.41 Aligned_cols=100 Identities=16% Similarity=0.124 Sum_probs=53.8
Q ss_pred cccCCCCCCEEEEEecC-CCccHHHHHhhhCCCcEEEEEeCChHHHHHHHHHHHcCCCeEEEEccCCC--Cccc-cc-CC
Q 021911 137 DNIWIKPGARVLYLGAA-SGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKRTNVIPIIEDARH--PAKY-RM-LV 211 (305)
Q Consensus 137 ~~~~~~~g~~VLDlG~G-~G~~t~~la~~~~~~~~V~avD~s~~~~~~l~~~a~~~~nI~~~~~D~~~--~~~~-~~-~~ 211 (305)
....+.++++||-+|+| .|..+..+|+..+. ..|++++.++.. ++.+++.. +..+ .|..+ .... .. ..
T Consensus 157 ~~~~~~~g~~vlV~G~G~vG~~~~~~ak~~G~-~~vi~~~~~~~~----~~~~~~~g-a~~~-i~~~~~~~~~~~~~~~~ 229 (339)
T cd08239 157 RRVGVSGRDTVLVVGAGPVGLGALMLARALGA-EDVIGVDPSPER----LELAKALG-ADFV-INSGQDDVQEIRELTSG 229 (339)
T ss_pred HhcCCCCCCEEEEECCCHHHHHHHHHHHHcCC-CEEEEECCCHHH----HHHHHHhC-CCEE-EcCCcchHHHHHHHhCC
Confidence 33467789999999763 22244455666542 249999988743 33333221 1111 11111 1000 01 12
Q ss_pred CcEeEEEEeCCChhHHHHHHHHHhccCCCCcEEEEE
Q 021911 212 GMVDVIFSDVAQPDQARILALNASYFLKAGGHFVIS 247 (305)
Q Consensus 212 ~~fD~V~~d~~~~~~~~~l~~~a~~~LkpGG~lv~s 247 (305)
..+|+||-....+. .+. .+.+.|+++|++++.
T Consensus 230 ~~~d~vid~~g~~~---~~~-~~~~~l~~~G~~v~~ 261 (339)
T cd08239 230 AGADVAIECSGNTA---ARR-LALEAVRPWGRLVLV 261 (339)
T ss_pred CCCCEEEECCCCHH---HHH-HHHHHhhcCCEEEEE
Confidence 36999986555433 222 556789999999865
|
MDR/AHD-like proteins, including a protein annotated as a threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine via NAD(H)-dependent oxidation. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Zinc-dependent ADHs are medium chain dehydrogenase/reductase type proteins (MDRs) and have a NAD(P)(H)-binding domain in a Rossmann fold of an beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. In addition to alcohol dehydrogenases, this group includes quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc at |
| >PF00106 adh_short: short chain dehydrogenase alcohol dehydrogenase superfamily signature glucose/ribitol dehydrogenase family signature; InterPro: IPR002198 The short-chain dehydrogenases/reductases family (SDR) [] is a very large family of enzymes, most of which are known to be NAD- or NADP-dependent oxidoreductases | Back alignment and domain information |
|---|
Probab=81.43 E-value=12 Score=30.28 Aligned_cols=76 Identities=20% Similarity=0.261 Sum_probs=47.9
Q ss_pred EEEEEecCCCccHHHHHhhhCC--CcEEEEEeCC--hHHHHHHHHHHHcC-CCeEEEEccCCCCcccc-------cCCCc
Q 021911 146 RVLYLGAASGTTVSHVSDIVGP--NGVVYAVEFS--HRSGRDLVNMAKKR-TNVIPIIEDARHPAKYR-------MLVGM 213 (305)
Q Consensus 146 ~VLDlG~G~G~~t~~la~~~~~--~~~V~avD~s--~~~~~~l~~~a~~~-~nI~~~~~D~~~~~~~~-------~~~~~ 213 (305)
+||-.|+. +.....++..+-. ...|+.+.-+ .....++++..+.. .++.++.+|+.+..... .....
T Consensus 2 ~~lItGa~-~giG~~~a~~l~~~g~~~v~~~~r~~~~~~~~~l~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~ 80 (167)
T PF00106_consen 2 TVLITGAS-SGIGRALARALARRGARVVILTSRSEDSEGAQELIQELKAPGAKITFIECDLSDPESIRALIEEVIKRFGP 80 (167)
T ss_dssp EEEEETTT-SHHHHHHHHHHHHTTTEEEEEEESSCHHHHHHHHHHHHHHTTSEEEEEESETTSHHHHHHHHHHHHHHHSS
T ss_pred EEEEECCC-CHHHHHHHHHHHhcCceEEEEeeeccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 46666765 4455555554422 3477778877 55555565555433 68899999988764321 12368
Q ss_pred EeEEEEeCC
Q 021911 214 VDVIFSDVA 222 (305)
Q Consensus 214 fD~V~~d~~ 222 (305)
+|++|.+..
T Consensus 81 ld~li~~ag 89 (167)
T PF00106_consen 81 LDILINNAG 89 (167)
T ss_dssp ESEEEEECS
T ss_pred ccccccccc
Confidence 999998776
|
As the first member of this family to be characterised was Drosophila alcohol dehydrogenase, this family used to be called [, , ] 'insect-type', or 'short-chain' alcohol dehydrogenases. Most member of this family are proteins of about 250 to 300 amino acid residues. Most dehydrogenases possess at least 2 domains [], the first binding the coenzyme, often NAD, and the second binding the substrate. This latter domain determines the substrate specificity and contains amino acids involved in catalysis. Little sequence similarity has been found in the coenzyme binding domain although there is a large degree of structural similarity, and it has therefore been suggested that the structure of dehydrogenases has arisen through gene fusion of a common ancestral coenzyme nucleotide sequence with various substrate specific domains [].; GO: 0016491 oxidoreductase activity, 0008152 metabolic process; PDB: 3QWI_D 3QWF_G 3IS3_A 3QWH_C 3ITD_A 3L77_A 1HDC_C 2HSD_C 3KVO_A 3KZV_A .... |
| >PRK07904 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=81.26 E-value=4.5 Score=35.80 Aligned_cols=80 Identities=18% Similarity=0.088 Sum_probs=51.1
Q ss_pred CCCCEEEEEecCCCccHHHHHhhh-CC-CcEEEEEeCChHH-HHHHHHHHHcC--CCeEEEEccCCCCccccc------C
Q 021911 142 KPGARVLYLGAASGTTVSHVSDIV-GP-NGVVYAVEFSHRS-GRDLVNMAKKR--TNVIPIIEDARHPAKYRM------L 210 (305)
Q Consensus 142 ~~g~~VLDlG~G~G~~t~~la~~~-~~-~~~V~avD~s~~~-~~~l~~~a~~~--~nI~~~~~D~~~~~~~~~------~ 210 (305)
..+.+||-.|| ++....++++.+ .. ..+|+.++.++.. ..++.+..++. .+++++.+|+.+...... .
T Consensus 6 ~~~~~vlItGa-s~giG~~la~~l~~~gg~~V~~~~r~~~~~~~~~~~~l~~~~~~~v~~~~~D~~~~~~~~~~~~~~~~ 84 (253)
T PRK07904 6 GNPQTILLLGG-TSEIGLAICERYLKNAPARVVLAALPDDPRRDAAVAQMKAAGASSVEVIDFDALDTDSHPKVIDAAFA 84 (253)
T ss_pred CCCcEEEEEcC-CcHHHHHHHHHHHhcCCCeEEEEeCCcchhHHHHHHHHHhcCCCceEEEEecCCChHHHHHHHHHHHh
Confidence 34568888887 556777777764 22 2589998887653 45555444432 378999999977543110 1
Q ss_pred CCcEeEEEEeCC
Q 021911 211 VGMVDVIFSDVA 222 (305)
Q Consensus 211 ~~~fD~V~~d~~ 222 (305)
...+|+++.+..
T Consensus 85 ~g~id~li~~ag 96 (253)
T PRK07904 85 GGDVDVAIVAFG 96 (253)
T ss_pred cCCCCEEEEeee
Confidence 147898887554
|
|
| >PLN03209 translocon at the inner envelope of chloroplast subunit 62; Provisional | Back alignment and domain information |
|---|
Probab=81.24 E-value=5.7 Score=40.00 Aligned_cols=82 Identities=18% Similarity=0.100 Sum_probs=53.9
Q ss_pred CCCCCCEEEEEecCCCccHHHHHhhh-CCCcEEEEEeCChHHHHHHHHHHHc----------CCCeEEEEccCCCCcccc
Q 021911 140 WIKPGARVLYLGAASGTTVSHVSDIV-GPNGVVYAVEFSHRSGRDLVNMAKK----------RTNVIPIIEDARHPAKYR 208 (305)
Q Consensus 140 ~~~~g~~VLDlG~G~G~~t~~la~~~-~~~~~V~avD~s~~~~~~l~~~a~~----------~~nI~~~~~D~~~~~~~~ 208 (305)
+.+.+..||-+|+ +|....++++.+ ....+|++++.+......+.+.... ..++.++.+|+.+.....
T Consensus 76 ~~~~gKvVLVTGA-TGgIG~aLAr~LLk~G~~Vval~Rn~ekl~~l~~~l~~~~L~~~Ga~~~~~v~iV~gDLtD~esI~ 154 (576)
T PLN03209 76 DTKDEDLAFVAGA-TGKVGSRTVRELLKLGFRVRAGVRSAQRAESLVQSVKQMKLDVEGTQPVEKLEIVECDLEKPDQIG 154 (576)
T ss_pred ccCCCCEEEEECC-CCHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHhhhhccccccccccCceEEEEecCCCHHHHH
Confidence 5567778887775 577788877665 2345799998887555444433221 135889999998765432
Q ss_pred cCCCcEeEEEEeCC
Q 021911 209 MLVGMVDVIFSDVA 222 (305)
Q Consensus 209 ~~~~~fD~V~~d~~ 222 (305)
.....+|+||+++.
T Consensus 155 ~aLggiDiVVn~AG 168 (576)
T PLN03209 155 PALGNASVVICCIG 168 (576)
T ss_pred HHhcCCCEEEEccc
Confidence 23457899988764
|
|
| >PRK08340 glucose-1-dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=81.06 E-value=5 Score=35.44 Aligned_cols=77 Identities=13% Similarity=0.097 Sum_probs=49.2
Q ss_pred CEEEEEecCCCccHHHHHhhhC-CCcEEEEEeCChHHHHHHHHHHHcCCCeEEEEccCCCCccccc-------CCCcEeE
Q 021911 145 ARVLYLGAASGTTVSHVSDIVG-PNGVVYAVEFSHRSGRDLVNMAKKRTNVIPIIEDARHPAKYRM-------LVGMVDV 216 (305)
Q Consensus 145 ~~VLDlG~G~G~~t~~la~~~~-~~~~V~avD~s~~~~~~l~~~a~~~~nI~~~~~D~~~~~~~~~-------~~~~fD~ 216 (305)
++||-.|++. .....+++.+. ...+|+.++.++..+.++.+..+...++.++.+|+++...... ....+|+
T Consensus 1 m~vlItGas~-gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~Dv~d~~~~~~~~~~~~~~~g~id~ 79 (259)
T PRK08340 1 MNVLVTASSR-GIGFNVARELLKKGARVVISSRNEENLEKALKELKEYGEVYAVKADLSDKDDLKNLVKEAWELLGGIDA 79 (259)
T ss_pred CeEEEEcCCc-HHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhcCCceEEEcCCCCHHHHHHHHHHHHHhcCCCCE
Confidence 3678888654 46666665542 3458899998876655555554444568889999987643211 1257899
Q ss_pred EEEeCC
Q 021911 217 IFSDVA 222 (305)
Q Consensus 217 V~~d~~ 222 (305)
|+.++.
T Consensus 80 li~naG 85 (259)
T PRK08340 80 LVWNAG 85 (259)
T ss_pred EEECCC
Confidence 987653
|
|
| >TIGR00561 pntA NAD(P) transhydrogenase, alpha subunit | Back alignment and domain information |
|---|
Probab=81.05 E-value=4.3 Score=40.30 Aligned_cols=97 Identities=19% Similarity=0.262 Sum_probs=55.9
Q ss_pred CCCCEEEEEecCCC-ccHHHHHhhhCCCcEEEEEeCChHHHHHHHHHHHcCCCeEEEEccCCC-----------Cc-c--
Q 021911 142 KPGARVLYLGAASG-TTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKRTNVIPIIEDARH-----------PA-K-- 206 (305)
Q Consensus 142 ~~g~~VLDlG~G~G-~~t~~la~~~~~~~~V~avD~s~~~~~~l~~~a~~~~nI~~~~~D~~~-----------~~-~-- 206 (305)
.++.+||-+|||.= ..+..++..++ ..|+++|.++.. ++.++.. ..+++..|..+ .. +
T Consensus 162 vp~akVlViGaG~iGl~Aa~~ak~lG--A~V~v~d~~~~r----le~a~~l-Ga~~v~v~~~e~g~~~~gYa~~~s~~~~ 234 (511)
T TIGR00561 162 VPPAKVLVIGAGVAGLAAIGAANSLG--AIVRAFDTRPEV----KEQVQSM-GAEFLELDFKEEGGSGDGYAKVMSEEFI 234 (511)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHCC--CEEEEEeCCHHH----HHHHHHc-CCeEEeccccccccccccceeecCHHHH
Confidence 35689999999853 45556666655 469999999843 3444432 23333333211 00 0
Q ss_pred ------cccCCCcEeEEEEeCCChhH--HHHHHHHHhccCCCCcEEE
Q 021911 207 ------YRMLVGMVDVIFSDVAQPDQ--ARILALNASYFLKAGGHFV 245 (305)
Q Consensus 207 ------~~~~~~~fD~V~~d~~~~~~--~~~l~~~a~~~LkpGG~lv 245 (305)
.......+|+||..+..|-. ..++..++.+.+|||+.++
T Consensus 235 ~~~~~~~~e~~~~~DIVI~TalipG~~aP~Lit~emv~~MKpGsvIV 281 (511)
T TIGR00561 235 AAEMELFAAQAKEVDIIITTALIPGKPAPKLITEEMVDSMKAGSVIV 281 (511)
T ss_pred HHHHHHHHHHhCCCCEEEECcccCCCCCCeeehHHHHhhCCCCCEEE
Confidence 00113579999987732211 1233336678999998776
|
In some species, such as Rhodospirillum rubrum, the alpha chain is replaced by two shorter chains, both with some homology to the full-length alpha chain modeled here. These score below the trusted cutoff. |
| >PLN02586 probable cinnamyl alcohol dehydrogenase | Back alignment and domain information |
|---|
Probab=81.02 E-value=7.8 Score=36.37 Aligned_cols=96 Identities=18% Similarity=0.257 Sum_probs=51.6
Q ss_pred CCCCCEEEEEecC-CCccHHHHHhhhCCCcEEEEEeCChHHHHHHHHHHHcCCCeEEEEccCCCCcccccCCCcEeEEEE
Q 021911 141 IKPGARVLYLGAA-SGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKRTNVIPIIEDARHPAKYRMLVGMVDVIFS 219 (305)
Q Consensus 141 ~~~g~~VLDlG~G-~G~~t~~la~~~~~~~~V~avD~s~~~~~~l~~~a~~~~nI~~~~~D~~~~~~~~~~~~~fD~V~~ 219 (305)
++++++||-.|+| -|..+..+|+..+ .+|++++.++... .+.+++. .+..+. |..+..........+|+||-
T Consensus 181 ~~~g~~VlV~G~G~vG~~avq~Ak~~G--a~vi~~~~~~~~~---~~~~~~~-Ga~~vi-~~~~~~~~~~~~~~~D~vid 253 (360)
T PLN02586 181 TEPGKHLGVAGLGGLGHVAVKIGKAFG--LKVTVISSSSNKE---DEAINRL-GADSFL-VSTDPEKMKAAIGTMDYIID 253 (360)
T ss_pred cCCCCEEEEECCCHHHHHHHHHHHHCC--CEEEEEeCCcchh---hhHHHhC-CCcEEE-cCCCHHHHHhhcCCCCEEEE
Confidence 4678899998764 2335556666654 4688888876322 2222222 222111 11111111111135899985
Q ss_pred eCCChhHHHHHHHHHhccCCCCcEEEEE
Q 021911 220 DVAQPDQARILALNASYFLKAGGHFVIS 247 (305)
Q Consensus 220 d~~~~~~~~~l~~~a~~~LkpGG~lv~s 247 (305)
....+. .+. .+.+.|+++|+++..
T Consensus 254 ~~g~~~---~~~-~~~~~l~~~G~iv~v 277 (360)
T PLN02586 254 TVSAVH---ALG-PLLGLLKVNGKLITL 277 (360)
T ss_pred CCCCHH---HHH-HHHHHhcCCcEEEEe
Confidence 444332 333 566899999999865
|
|
| >cd08293 PTGR2 Prostaglandin reductase | Back alignment and domain information |
|---|
Probab=80.96 E-value=4.5 Score=37.30 Aligned_cols=99 Identities=19% Similarity=0.221 Sum_probs=54.1
Q ss_pred CCCCC--CEEEEEec--CCCccHHHHHhhhCCCcEEEEEeCChHHHHHHHHHHHcCCCeEEEEccCCCCcc-c-ccCCCc
Q 021911 140 WIKPG--ARVLYLGA--ASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKRTNVIPIIEDARHPAK-Y-RMLVGM 213 (305)
Q Consensus 140 ~~~~g--~~VLDlG~--G~G~~t~~la~~~~~~~~V~avD~s~~~~~~l~~~a~~~~nI~~~~~D~~~~~~-~-~~~~~~ 213 (305)
.++++ ++||-.|+ +.|..+..+|+..+. .+|++++.++.....+.+..-. +. ++..+-.++.. . ......
T Consensus 149 ~~~~g~~~~VlI~ga~g~vG~~aiqlAk~~G~-~~Vi~~~~s~~~~~~~~~~lGa-~~--vi~~~~~~~~~~i~~~~~~g 224 (345)
T cd08293 149 HITPGANQTMVVSGAAGACGSLAGQIGRLLGC-SRVVGICGSDEKCQLLKSELGF-DA--AINYKTDNVAERLRELCPEG 224 (345)
T ss_pred cCCCCCCCEEEEECCCcHHHHHHHHHHHHcCC-CEEEEEcCCHHHHHHHHHhcCC-cE--EEECCCCCHHHHHHHHCCCC
Confidence 35555 89999886 456677778887541 2699999887433222221111 11 11111111110 0 011246
Q ss_pred EeEEEEeCCChhHHHHHHHHHhccCCCCcEEEEE
Q 021911 214 VDVIFSDVAQPDQARILALNASYFLKAGGHFVIS 247 (305)
Q Consensus 214 fD~V~~d~~~~~~~~~l~~~a~~~LkpGG~lv~s 247 (305)
+|+|+-....+. +. .+.+.|+++|+++..
T Consensus 225 vd~vid~~g~~~----~~-~~~~~l~~~G~iv~~ 253 (345)
T cd08293 225 VDVYFDNVGGEI----SD-TVISQMNENSHIILC 253 (345)
T ss_pred ceEEEECCCcHH----HH-HHHHHhccCCEEEEE
Confidence 999985444332 33 566899999999863
|
Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acid |
| >PF14740 DUF4471: Domain of unknown function (DUF4471) | Back alignment and domain information |
|---|
Probab=80.71 E-value=9.5 Score=35.00 Aligned_cols=65 Identities=22% Similarity=0.286 Sum_probs=40.0
Q ss_pred CcEeEEEEeCCChhHHHHHHHHHhccCCCCcEEEEEEcccccCCCCchhhhHHHHHHHH-HHCCCcEeE
Q 021911 212 GMVDVIFSDVAQPDQARILALNASYFLKAGGHFVISIKANCIDSTVPAEAVFQSEVKKL-QQDQFKPFE 279 (305)
Q Consensus 212 ~~fD~V~~d~~~~~~~~~l~~~a~~~LkpGG~lv~s~~~~~i~~~~~~~~v~~~~~~~l-~~~Gf~~~e 279 (305)
+.||+|+.... ....|......+++|++.|++.+...-++-..+....|.+.+.+| +++||++..
T Consensus 221 ~~Fd~ifvs~s---~vh~L~p~l~~~~a~~A~LvvEtaKfmvdLrKEq~~~F~~kv~eLA~~aG~~p~~ 286 (289)
T PF14740_consen 221 NFFDLIFVSCS---MVHFLKPELFQALAPDAVLVVETAKFMVDLRKEQLQEFVKKVKELAKAAGFKPVT 286 (289)
T ss_pred CCCCEEEEhhh---hHhhcchHHHHHhCCCCEEEEEcchhheeCCHHHHHHHHHHHHHHHHHCCCcccc
Confidence 46676664332 233333345578999999999983222334434444566666655 889998864
|
|
| >TIGR01202 bchC 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase | Back alignment and domain information |
|---|
Probab=80.70 E-value=6.1 Score=36.14 Aligned_cols=87 Identities=16% Similarity=0.144 Sum_probs=51.0
Q ss_pred CCCCEEEEEecC-CCccHHHHHhhhCCCcEEEEEeCChHHHHHHHHHHHcCCCeEEEEccCCCCcccccCCCcEeEEEEe
Q 021911 142 KPGARVLYLGAA-SGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKRTNVIPIIEDARHPAKYRMLVGMVDVIFSD 220 (305)
Q Consensus 142 ~~g~~VLDlG~G-~G~~t~~la~~~~~~~~V~avD~s~~~~~~l~~~a~~~~nI~~~~~D~~~~~~~~~~~~~fD~V~~d 220 (305)
.++.+||=+||| -|.++..+|+..+ ...|+++|.++.+ ++.+... .. .|..+. ....+|+||-.
T Consensus 143 ~~~~~vlV~G~G~vG~~a~q~ak~~G-~~~v~~~~~~~~r----l~~a~~~---~~--i~~~~~-----~~~g~Dvvid~ 207 (308)
T TIGR01202 143 VKVLPDLIVGHGTLGRLLARLTKAAG-GSPPAVWETNPRR----RDGATGY---EV--LDPEKD-----PRRDYRAIYDA 207 (308)
T ss_pred cCCCcEEEECCCHHHHHHHHHHHHcC-CceEEEeCCCHHH----HHhhhhc---cc--cChhhc-----cCCCCCEEEEC
Confidence 357789988765 3445666777654 2247778888743 3333321 11 121110 12468999866
Q ss_pred CCChhHHHHHHHHHhccCCCCcEEEEE
Q 021911 221 VAQPDQARILALNASYFLKAGGHFVIS 247 (305)
Q Consensus 221 ~~~~~~~~~l~~~a~~~LkpGG~lv~s 247 (305)
...+.. +. .+.++|+++|++++.
T Consensus 208 ~G~~~~---~~-~~~~~l~~~G~iv~~ 230 (308)
T TIGR01202 208 SGDPSL---ID-TLVRRLAKGGEIVLA 230 (308)
T ss_pred CCCHHH---HH-HHHHhhhcCcEEEEE
Confidence 655432 23 566799999999875
|
|
| >TIGR03589 PseB UDP-N-acetylglucosamine 4,6-dehydratase | Back alignment and domain information |
|---|
Probab=80.48 E-value=3.9 Score=37.83 Aligned_cols=77 Identities=13% Similarity=0.088 Sum_probs=48.9
Q ss_pred CCEEEEEecCCCccHHHHHhhhCCC---cEEEEEeCChHHHHHHHHHHHcCCCeEEEEccCCCCcccccCCCcEeEEEEe
Q 021911 144 GARVLYLGAASGTTVSHVSDIVGPN---GVVYAVEFSHRSGRDLVNMAKKRTNVIPIIEDARHPAKYRMLVGMVDVIFSD 220 (305)
Q Consensus 144 g~~VLDlG~G~G~~t~~la~~~~~~---~~V~avD~s~~~~~~l~~~a~~~~nI~~~~~D~~~~~~~~~~~~~fD~V~~d 220 (305)
+++||-.|+ +|....++++.+-.. ..|++++.++.....+.+... ..++.++.+|+++..........+|+||..
T Consensus 4 ~k~vLVTGa-tG~IG~~l~~~L~~~g~~~~V~~~~r~~~~~~~~~~~~~-~~~~~~v~~Dl~d~~~l~~~~~~iD~Vih~ 81 (324)
T TIGR03589 4 NKSILITGG-TGSFGKAFISRLLENYNPKKIIIYSRDELKQWEMQQKFP-APCLRFFIGDVRDKERLTRALRGVDYVVHA 81 (324)
T ss_pred CCEEEEeCC-CCHHHHHHHHHHHHhCCCcEEEEEcCChhHHHHHHHHhC-CCcEEEEEccCCCHHHHHHHHhcCCEEEEC
Confidence 567887775 688888888765322 478888876533222222221 246889999998876443233468999875
Q ss_pred CC
Q 021911 221 VA 222 (305)
Q Consensus 221 ~~ 222 (305)
+.
T Consensus 82 Ag 83 (324)
T TIGR03589 82 AA 83 (324)
T ss_pred cc
Confidence 44
|
This enzyme catalyzes the first step in the biosynthesis of pseudaminic acid, the conversion of UDP-N-acetylglucosamine to UDP-4-keto-6-deoxy-N-acetylglucosamine. These sequences are members of the broader pfam01073 (3-beta hydroxysteroid dehydrogenase/isomerase family) family. |
| >PF08484 Methyltransf_14: C-methyltransferase C-terminal domain; InterPro: IPR013691 This domain is found in bacterial C-methyltransferase proteins, often together with other methyltransferase domains such as IPR013216 from INTERPRO or IPR013217 from INTERPRO | Back alignment and domain information |
|---|
Probab=80.29 E-value=2.4 Score=35.38 Aligned_cols=103 Identities=15% Similarity=0.174 Sum_probs=47.5
Q ss_pred HHHHHHHccccccCCCCCCEEEEEecCCCccHHHHHhhhCCCcEEEEEeCChHHHHHHHHHHHcC---C--CeEEEEccC
Q 021911 127 KLAAAVLGGVDNIWIKPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKR---T--NVIPIIEDA 201 (305)
Q Consensus 127 ~l~a~ll~~l~~~~~~~g~~VLDlG~G~G~~t~~la~~~~~~~~V~avD~s~~~~~~l~~~a~~~---~--nI~~~~~D~ 201 (305)
+....+...|..+ ...+.+|.=.||+.-..++.-.--+.+.--.+.||.++ .+.- + .|..+.-+.
T Consensus 52 ~~~~~l~~~L~~~-~~~gk~I~~yGA~~kg~tlln~~g~~~~~I~~vvD~np---------~K~G~~~PGt~ipI~~p~~ 121 (160)
T PF08484_consen 52 QSKAELREFLEKL-KAEGKRIAGYGAGAKGNTLLNYFGLDNDLIDYVVDDNP---------LKQGKYLPGTHIPIVSPEE 121 (160)
T ss_dssp HHHHHHHHHHHHH-HHTT--EEEE---SHHHHHHHHHT--TTTS--EEES-G---------GGTTEE-TTT--EEEEGGG
T ss_pred HHHHHHHHHHHHH-HHcCCEEEEECcchHHHHHHHHhCCCcceeEEEEeCCh---------hhcCcccCCCCCeECCHHH
Confidence 3333444433322 23568888888877655543332222333567889988 2221 2 344333222
Q ss_pred CCCcccccCCCcEeEEEEeCCChhHHHHHHHHHhccCCCCcEEEEEE
Q 021911 202 RHPAKYRMLVGMVDVIFSDVAQPDQARILALNASYFLKAGGHFVISI 248 (305)
Q Consensus 202 ~~~~~~~~~~~~fD~V~~d~~~~~~~~~l~~~a~~~LkpGG~lv~s~ 248 (305)
. .....|+|+. +++.-..+++. +...+++.||.|++..
T Consensus 122 l-------~~~~pd~viv-law~y~~EI~~-~~~~~~~~gg~fi~pl 159 (160)
T PF08484_consen 122 L-------KERKPDYVIV-LAWNYKDEIIE-KLREYLERGGKFIVPL 159 (160)
T ss_dssp ---------SS--SEEEE-S-GGGHHHHHH-HTHHHHHTT-EEEE-S
T ss_pred H-------hhCCCCEEEE-cChhhHHHHHH-HHHHHHhcCCEEEEeC
Confidence 1 2346788876 44455566666 8888999999999864
|
; PDB: 4E2X_A 3NDJ_A 3NDI_A 4E32_A 4E33_A 4E31_A 4E2Y_A 4E2W_A 4E2Z_A 4E30_A. |
Homologous Structure Templates
Structure Templates Detected by BLAST 
Original result of BLAST against Protein Data Bank
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() | |
| Query | 305 | ||||
| 2ipx_A | 233 | Human Fibrillarin Length = 233 | 1e-104 | ||
| 1pry_A | 227 | Structure Determination Of Fibrillarin Homologue Fr | 9e-56 | ||
| 2nnw_B | 234 | Alternative Conformations Of Nop56/58-fibrillarin C | 6e-55 | ||
| 1g8a_A | 227 | Pyrococcus Horikoshii Fibrillarin Pre-Rrna Processi | 3e-54 | ||
| 4df3_A | 233 | Crystal Structure Of Aeropyrum Pernix Fibrillarin I | 2e-52 | ||
| 3id5_B | 232 | Crystal Structure Of Sulfolobus Solfataricus CD RNP | 1e-50 | ||
| 1g8s_A | 230 | Methanococcus Jannaschii Fibrillarin Pre-Rrna Proce | 1e-48 | ||
| 1fbn_A | 230 | Crystal Structure Of A Fibrillarin Homologue From M | 3e-48 | ||
| 1nt2_A | 210 | Crystal Structure Of FibrillarinNOP5P COMPLEX Lengt | 9e-40 |
| >pdb|2IPX|A Chain A, Human Fibrillarin Length = 233 | Back alignment and structure |
|
| >pdb|1PRY|A Chain A, Structure Determination Of Fibrillarin Homologue From Hyperthermophilic Archaeon Pyrococcus Furiosus (Pfu-65527) Length = 227 | Back alignment and structure |
|
| >pdb|2NNW|B Chain B, Alternative Conformations Of Nop56/58-fibrillarin Complex And Implication For Induced-fit Assenly Of Box C/d Rnps Length = 234 | Back alignment and structure |
|
| >pdb|1G8A|A Chain A, Pyrococcus Horikoshii Fibrillarin Pre-Rrna Processing Protein Length = 227 | Back alignment and structure |
|
| >pdb|4DF3|A Chain A, Crystal Structure Of Aeropyrum Pernix Fibrillarin In Complex With Natively Bound S-adenosyl-l-methionine At 1.7a Length = 233 | Back alignment and structure |
|
| >pdb|3ID5|B Chain B, Crystal Structure Of Sulfolobus Solfataricus CD RNP ASSEMBLED WITH Nop5, Fibrillarin, L7ae And A Split Half CD RNA Length = 232 | Back alignment and structure |
|
| >pdb|1G8S|A Chain A, Methanococcus Jannaschii Fibrillarin Pre-Rrna Processing Protein Length = 230 | Back alignment and structure |
|
| >pdb|1FBN|A Chain A, Crystal Structure Of A Fibrillarin Homologue From Methanococcus Jannaschii, A Hyperthermophile, At 1.6 A Length = 230 | Back alignment and structure |
|
| >pdb|1NT2|A Chain A, Crystal Structure Of FibrillarinNOP5P COMPLEX Length = 210 | Back alignment and structure |
|
Structure Templates Detected by HHsearch 
Original result of HHsearch against PDB70 database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Probability ![]() |
| Query | 305 | |||
| 4df3_A | 233 | Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; | 100.0 | |
| 3id6_C | 232 | Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; | 100.0 | |
| 2ipx_A | 233 | RRNA 2'-O-methyltransferase fibrillarin; FBL, stru | 100.0 | |
| 1nt2_A | 210 | Fibrillarin-like PRE-rRNA processing protein; adeM | 100.0 | |
| 1fbn_A | 230 | MJ fibrillarin homologue; MJ proteins, ribosomal R | 100.0 | |
| 1g8a_A | 227 | Fibrillarin-like PRE-rRNA processing protein; rRNA | 99.97 | |
| 3m4x_A | 456 | NOL1/NOP2/SUN family protein; mtase domain, PUA do | 99.84 | |
| 3ajd_A | 274 | Putative methyltransferase MJ0026; tRNA, M5C, ross | 99.83 | |
| 1ixk_A | 315 | Methyltransferase; open beta sheet; 1.90A {Pyrococ | 99.82 | |
| 3m6w_A | 464 | RRNA methylase; rRNA methyltransferase, 5-methylcy | 99.82 | |
| 2b9e_A | 309 | NOL1/NOP2/SUN domain family, member 5 isoform 2; m | 99.82 | |
| 2frx_A | 479 | Hypothetical protein YEBU; rossmann-type S-adenosy | 99.8 | |
| 2yxl_A | 450 | PH0851 protein, 450AA long hypothetical FMU protei | 99.8 | |
| 4fzv_A | 359 | Putative methyltransferase NSUN4; mterf fold, meth | 99.78 | |
| 1sqg_A | 429 | SUN protein, FMU protein; rossmann-fold, mixed bet | 99.77 | |
| 3dh0_A | 219 | SAM dependent methyltransferase; cystal structure, | 99.69 | |
| 4gek_A | 261 | TRNA (CMO5U34)-methyltransferase; structural genom | 99.69 | |
| 3eey_A | 197 | Putative rRNA methylase; rRNA methylation, S-adeno | 99.67 | |
| 1nkv_A | 256 | Hypothetical protein YJHP; structural genomics, PS | 99.65 | |
| 3kkz_A | 267 | Uncharacterized protein Q5LES9; putative methyltra | 99.65 | |
| 3mti_A | 185 | RRNA methylase; SAM-dependent, PSI, MCSG, structur | 99.64 | |
| 2frn_A | 278 | Hypothetical protein PH0793; structural genomics, | 99.64 | |
| 3dtn_A | 234 | Putative methyltransferase MM_2633; structural gen | 99.64 | |
| 3i9f_A | 170 | Putative type 11 methyltransferase; structural gen | 99.63 | |
| 3lpm_A | 259 | Putative methyltransferase; structural genomics, p | 99.63 | |
| 2pwy_A | 258 | TRNA (adenine-N(1)-)-methyltransferase; mtase, ado | 99.63 | |
| 3f4k_A | 257 | Putative methyltransferase; structural genomics, P | 99.62 | |
| 3e05_A | 204 | Precorrin-6Y C5,15-methyltransferase (decarboxyla; | 99.62 | |
| 1xdz_A | 240 | Methyltransferase GIDB; MCSG, protein structure in | 99.61 | |
| 4fsd_A | 383 | Arsenic methyltransferase; rossmann fold; 1.75A {C | 99.61 | |
| 3evz_A | 230 | Methyltransferase; NYSGXRC, NEW YORK SGX research | 99.61 | |
| 3h2b_A | 203 | SAM-dependent methyltransferase; alpha-beta protei | 99.6 | |
| 3grz_A | 205 | L11 mtase, ribosomal protein L11 methyltransferase | 99.6 | |
| 1yb2_A | 275 | Hypothetical protein TA0852; structural genomics, | 99.6 | |
| 1yzh_A | 214 | TRNA (guanine-N(7)-)-methyltransferase; alpha-beta | 99.58 | |
| 3dlc_A | 219 | Putative S-adenosyl-L-methionine-dependent methylt | 99.58 | |
| 3ujc_A | 266 | Phosphoethanolamine N-methyltransferase; parasite; | 99.58 | |
| 3g89_A | 249 | Ribosomal RNA small subunit methyltransferase G; 1 | 99.58 | |
| 3tfw_A | 248 | Putative O-methyltransferase; PSI-biology, nysgrc, | 99.57 | |
| 3njr_A | 204 | Precorrin-6Y methylase; methyltransferase, decarbo | 99.57 | |
| 1pjz_A | 203 | Thiopurine S-methyltransferase; polymorphism, S-ad | 99.57 | |
| 3e8s_A | 227 | Putative SAM dependent methyltransferase; NP_74470 | 99.57 | |
| 2b3t_A | 276 | Protein methyltransferase HEMK; translation termin | 99.57 | |
| 3dou_A | 191 | Ribosomal RNA large subunit methyltransferase J; c | 99.57 | |
| 3g5l_A | 253 | Putative S-adenosylmethionine dependent methyltran | 99.56 | |
| 2fca_A | 213 | TRNA (guanine-N(7)-)-methyltransferase; 2.10A {Bac | 99.56 | |
| 1xtp_A | 254 | LMAJ004091AAA; SGPP, structural genomics, PSI, pro | 99.56 | |
| 3k6r_A | 278 | Putative transferase PH0793; structural genomics, | 99.56 | |
| 2a14_A | 263 | Indolethylamine N-methyltransferase; SGC,INMT, str | 99.56 | |
| 3vc1_A | 312 | Geranyl diphosphate 2-C-methyltransferase; rossman | 99.56 | |
| 3e23_A | 211 | Uncharacterized protein RPA2492; alpha-beta protei | 99.56 | |
| 4hg2_A | 257 | Methyltransferase type 11; structural genomics, PS | 99.56 | |
| 3ou2_A | 218 | SAM-dependent methyltransferase; O-methyltransfera | 99.56 | |
| 1jsx_A | 207 | Glucose-inhibited division protein B; methyltransf | 99.55 | |
| 3mb5_A | 255 | SAM-dependent methyltransferase; RNA methyltransfe | 99.55 | |
| 3p9n_A | 189 | Possible methyltransferase (methylase); RV2966C, a | 99.55 | |
| 3pfg_A | 263 | N-methyltransferase; N,N-dimethyltransferase, SAM | 99.54 | |
| 3hnr_A | 220 | Probable methyltransferase BT9727_4108; structural | 99.54 | |
| 3bus_A | 273 | REBM, methyltransferase; rebeccamycin synthesis; H | 99.54 | |
| 1o54_A | 277 | SAM-dependent O-methyltransferase; TM0748, structu | 99.54 | |
| 1i9g_A | 280 | Hypothetical protein RV2118C; mtase, adoMet, cryst | 99.54 | |
| 3gu3_A | 284 | Methyltransferase; alpha-beta protein, structural | 99.54 | |
| 2gb4_A | 252 | Thiopurine S-methyltransferase; 18204406, thiopuri | 99.54 | |
| 3l8d_A | 242 | Methyltransferase; structural genomics, PSI, nysgr | 99.54 | |
| 3ofk_A | 216 | Nodulation protein S; NODS, N-methyltransferase, S | 99.54 | |
| 2ozv_A | 260 | Hypothetical protein ATU0636; structural genomics, | 99.53 | |
| 3dli_A | 240 | Methyltransferase; PSI-II, NYSGXRC, structural gen | 99.53 | |
| 3duw_A | 223 | OMT, O-methyltransferase, putative; alternating of | 99.53 | |
| 3mq2_A | 218 | 16S rRNA methyltransferase; methyltranferase, ribo | 99.53 | |
| 2b25_A | 336 | Hypothetical protein; structural genomics, methyl | 99.53 | |
| 1vl5_A | 260 | Unknown conserved protein BH2331; putative methylt | 99.52 | |
| 1l3i_A | 192 | Precorrin-6Y methyltransferase/putative decarboxyl | 99.52 | |
| 3a27_A | 272 | TYW2, uncharacterized protein MJ1557; wybutosine m | 99.52 | |
| 3ege_A | 261 | Putative methyltransferase from antibiotic biosyn | 99.52 | |
| 1xxl_A | 239 | YCGJ protein; structural genomics, protein structu | 99.52 | |
| 3g07_A | 292 | 7SK snRNA methylphosphate capping enzyme; structur | 99.52 | |
| 2o57_A | 297 | Putative sarcosine dimethylglycine methyltransfera | 99.52 | |
| 3lcc_A | 235 | Putative methyl chloride transferase; halide methy | 99.51 | |
| 3jwg_A | 219 | HEN1, methyltransferase type 12; 1.90A {Clostridiu | 99.51 | |
| 3ocj_A | 305 | Putative exported protein; structural genomics, PS | 99.51 | |
| 2i62_A | 265 | Nicotinamide N-methyltransferase; structural genom | 99.51 | |
| 1ve3_A | 227 | Hypothetical protein PH0226; dimer, riken structur | 99.51 | |
| 3hem_A | 302 | Cyclopropane-fatty-acyl-phospholipid synthase 2; p | 99.51 | |
| 4htf_A | 285 | S-adenosylmethionine-dependent methyltransferase; | 99.51 | |
| 3fpf_A | 298 | Mtnas, putative uncharacterized protein; thermonic | 99.51 | |
| 1dus_A | 194 | MJ0882; hypothetical protein, methanococcus jannas | 99.51 | |
| 1y8c_A | 246 | S-adenosylmethionine-dependent methyltransferase; | 99.51 | |
| 3hp7_A | 291 | Hemolysin, putative; structural genomics, APC64019 | 99.51 | |
| 3orh_A | 236 | Guanidinoacetate N-methyltransferase; structura ge | 99.51 | |
| 2p35_A | 259 | Trans-aconitate 2-methyltransferase; SAM dependent | 99.5 | |
| 2xvm_A | 199 | Tellurite resistance protein TEHB; antibiotic resi | 99.5 | |
| 3tma_A | 354 | Methyltransferase; thump domain; 2.05A {Thermus th | 99.5 | |
| 2plw_A | 201 | Ribosomal RNA methyltransferase, putative; malaria | 99.5 | |
| 3mgg_A | 276 | Methyltransferase; NYSGXRC, PSI-II, protein struct | 99.5 | |
| 2ex4_A | 241 | Adrenal gland protein AD-003; methyltransferase, s | 99.49 | |
| 3sm3_A | 235 | SAM-dependent methyltransferases; NESG, structural | 99.49 | |
| 3dxy_A | 218 | TRNA (guanine-N(7)-)-methyltransferase; rossmann f | 99.49 | |
| 3cgg_A | 195 | SAM-dependent methyltransferase; NP_600671.1, meth | 99.49 | |
| 3r3h_A | 242 | O-methyltransferase, SAM-dependent; structural gen | 99.49 | |
| 3hm2_A | 178 | Precorrin-6Y C5,15-methyltransferase; alpha-beta-s | 99.49 | |
| 3u81_A | 221 | Catechol O-methyltransferase; neurotransmitter deg | 99.49 | |
| 3ccf_A | 279 | Cyclopropane-fatty-acyl-phospholipid synthase; YP_ | 99.49 | |
| 2kw5_A | 202 | SLR1183 protein; structural genomics, northeast st | 99.49 | |
| 2p7i_A | 250 | Hypothetical protein; putative methyltransferase, | 99.49 | |
| 3bxo_A | 239 | N,N-dimethyltransferase; desosamine, sugar, carboh | 99.48 | |
| 3bkw_A | 243 | MLL3908 protein, S-adenosylmethionine dependent me | 99.48 | |
| 3tr6_A | 225 | O-methyltransferase; cellular processes; HET: SAH; | 99.48 | |
| 3jwh_A | 217 | HEN1; methyltransferase; HET: SAH; 2.20A {Anabaena | 99.48 | |
| 3ntv_A | 232 | MW1564 protein; rossmann fold, putative methyltran | 99.47 | |
| 1kpg_A | 287 | CFA synthase;, cyclopropane-fatty-acyl-phospholipi | 99.47 | |
| 2nxc_A | 254 | L11 mtase, ribosomal protein L11 methyltransferase | 99.47 | |
| 4dzr_A | 215 | Protein-(glutamine-N5) methyltransferase, release | 99.47 | |
| 3q87_B | 170 | N6 adenine specific DNA methylase; SAM-methyltrans | 99.47 | |
| 1vlm_A | 219 | SAM-dependent methyltransferase; possible histamin | 99.47 | |
| 3g2m_A | 299 | PCZA361.24; SAM-dependent methyltransferase, glyco | 99.47 | |
| 2esr_A | 177 | Methyltransferase; structural genomics, hypothetic | 99.46 | |
| 2fk8_A | 318 | Methoxy mycolic acid synthase 4; S-adenosylmethion | 99.46 | |
| 3g5t_A | 299 | Trans-aconitate 3-methyltransferase; structural ge | 99.46 | |
| 1ej0_A | 180 | FTSJ; methyltransferase, adoMet, adenosyl methioni | 99.46 | |
| 1inl_A | 296 | Spermidine synthase; beta-barrel, rossman fold, st | 99.46 | |
| 3ckk_A | 235 | TRNA (guanine-N(7)-)-methyltransferase; mettl1, S- | 99.46 | |
| 1zx0_A | 236 | Guanidinoacetate N-methyltransferase; structural g | 99.46 | |
| 1ri5_A | 298 | MRNA capping enzyme; methyltransferase, M7G, messe | 99.45 | |
| 3d2l_A | 243 | SAM-dependent methyltransferase; ZP_00538691.1, st | 99.45 | |
| 2pxx_A | 215 | Uncharacterized protein MGC2408; structural genomi | 99.45 | |
| 3bwc_A | 304 | Spermidine synthase; SAM, SGPP, structura genomics | 99.45 | |
| 3p2e_A | 225 | 16S rRNA methylase; methyltransferase, transferase | 99.45 | |
| 2yxd_A | 183 | Probable cobalt-precorrin-6Y C(15)-methyltransfer | 99.44 | |
| 2gpy_A | 233 | O-methyltransferase; structural genomics, PSI, pro | 99.44 | |
| 2igt_A | 332 | SAM dependent methyltransferase; alpha-beta sandwi | 99.44 | |
| 3kr9_A | 225 | SAM-dependent methyltransferase; class I rossmann- | 99.44 | |
| 3dr5_A | 221 | Putative O-methyltransferase; Q8NRD3, CGL1119, PF0 | 99.44 | |
| 2fhp_A | 187 | Methylase, putative; alpha-beta-alpha sandwich, st | 99.44 | |
| 1wzn_A | 252 | SAM-dependent methyltransferase; structural genomi | 99.44 | |
| 2ift_A | 201 | Putative methylase HI0767; NESG, Y767_haein, struc | 99.44 | |
| 2bm8_A | 236 | Cephalosporin hydroxylase CMCI; cephamycin biosynt | 99.44 | |
| 3lec_A | 230 | NADB-rossmann superfamily protein; PSI, MCSG, stru | 99.44 | |
| 1i1n_A | 226 | Protein-L-isoaspartate O-methyltransferase; S-aden | 99.43 | |
| 2vdv_E | 246 | TRNA (guanine-N(7)-)-methyltransferase; S-adenosyl | 99.43 | |
| 3m33_A | 226 | Uncharacterized protein; structural genomics, PSI- | 99.43 | |
| 3cc8_A | 230 | Putative methyltransferase; structural genomics, j | 99.43 | |
| 3bkx_A | 275 | SAM-dependent methyltransferase; YP_807781.1, cycl | 99.43 | |
| 4dcm_A | 375 | Ribosomal RNA large subunit methyltransferase G; 2 | 99.43 | |
| 4dmg_A | 393 | Putative uncharacterized protein TTHA1493; rRNA, m | 99.42 | |
| 2g72_A | 289 | Phenylethanolamine N-methyltransferase; HET: SAM F | 99.42 | |
| 3m70_A | 286 | Tellurite resistance protein TEHB homolog; structu | 99.42 | |
| 3dmg_A | 381 | Probable ribosomal RNA small subunit methyltransf; | 99.41 | |
| 3c3p_A | 210 | Methyltransferase; NP_951602.1, structural genomic | 99.41 | |
| 2b78_A | 385 | Hypothetical protein SMU.776; structure genomics, | 99.41 | |
| 2fpo_A | 202 | Methylase YHHF; structural genomics, putative meth | 99.41 | |
| 2r3s_A | 335 | Uncharacterized protein; methyltransferase domain, | 99.4 | |
| 3adn_A | 294 | Spermidine synthase; aminopropyltransferase, polya | 99.4 | |
| 3gnl_A | 244 | Uncharacterized protein, DUF633, LMOF2365_1472; st | 99.4 | |
| 1nv8_A | 284 | HEMK protein; class I adoMet-dependent methyltrans | 99.4 | |
| 1sui_A | 247 | Caffeoyl-COA O-methyltransferase; rossmann fold, p | 99.39 | |
| 1uwv_A | 433 | 23S rRNA (uracil-5-)-methyltransferase RUMA; RNA m | 99.39 | |
| 3c3y_A | 237 | Pfomt, O-methyltransferase; plant secondary metabo | 99.39 | |
| 2yqz_A | 263 | Hypothetical protein TTHA0223; RNA methyltransfera | 99.39 | |
| 3uwp_A | 438 | Histone-lysine N-methyltransferase, H3 lysine-79; | 99.38 | |
| 3mcz_A | 352 | O-methyltransferase; adomet_mtases, S-adenosylmeth | 99.38 | |
| 1qzz_A | 374 | RDMB, aclacinomycin-10-hydroxylase; anthracycline, | 99.38 | |
| 2zfu_A | 215 | Nucleomethylin, cerebral protein 1; nucleolar prot | 99.38 | |
| 2hnk_A | 239 | SAM-dependent O-methyltransferase; modified rossma | 99.37 | |
| 2avd_A | 229 | Catechol-O-methyltransferase; structural genomics, | 99.37 | |
| 2p8j_A | 209 | S-adenosylmethionine-dependent methyltransferase; | 99.37 | |
| 2nyu_A | 196 | Putative ribosomal RNA methyltransferase 2; SAM, s | 99.37 | |
| 1wxx_A | 382 | TT1595, hypothetical protein TTHA1280; thermus the | 99.37 | |
| 1mjf_A | 281 | Spermidine synthase; spermidine synthetase, struct | 99.36 | |
| 4e2x_A | 416 | TCAB9; kijanose, tetronitrose, tetradeoxy sugar, s | 99.36 | |
| 1ws6_A | 171 | Methyltransferase; structural genomics, riken stru | 99.36 | |
| 3c0k_A | 396 | UPF0064 protein YCCW; PUA domain, adoMet dependent | 99.36 | |
| 1uir_A | 314 | Polyamine aminopropyltransferase; spermidien synth | 99.36 | |
| 2gs9_A | 211 | Hypothetical protein TT1324; methyl transferase, s | 99.36 | |
| 2pbf_A | 227 | Protein-L-isoaspartate O-methyltransferase beta-A | 99.36 | |
| 3cbg_A | 232 | O-methyltransferase; cyanobacterium; HET: SAH FER | 99.36 | |
| 3lbf_A | 210 | Protein-L-isoaspartate O-methyltransferase; modifi | 99.35 | |
| 3dp7_A | 363 | SAM-dependent methyltransferase; structural genomi | 99.35 | |
| 3v97_A | 703 | Ribosomal RNA large subunit methyltransferase L; Y | 99.35 | |
| 1iy9_A | 275 | Spermidine synthase; rossmann fold, structural gen | 99.35 | |
| 2yvl_A | 248 | TRMI protein, hypothetical protein; tRNA, methyltr | 99.34 | |
| 2o07_A | 304 | Spermidine synthase; structural genomics, structur | 99.34 | |
| 3gwz_A | 369 | MMCR; methyltransferase, mitomycin, S-adenosyl met | 99.34 | |
| 3i53_A | 332 | O-methyltransferase; CO-complex, rossmann-like fol | 99.34 | |
| 2vdw_A | 302 | Vaccinia virus capping enzyme D1 subunit; nucleoti | 99.34 | |
| 2i7c_A | 283 | Spermidine synthase; transferase, structural genom | 99.34 | |
| 3gjy_A | 317 | Spermidine synthase; APC62791, structural genomics | 99.34 | |
| 3bgv_A | 313 | MRNA CAP guanine-N7 methyltransferase; alternative | 99.33 | |
| 2yxe_A | 215 | Protein-L-isoaspartate O-methyltransferase; rossma | 99.33 | |
| 1x19_A | 359 | CRTF-related protein; methyltransferase, bacterioc | 99.33 | |
| 2yx1_A | 336 | Hypothetical protein MJ0883; methyl transferase, t | 99.33 | |
| 3ggd_A | 245 | SAM-dependent methyltransferase; YP_325210.1, stru | 99.33 | |
| 1tw3_A | 360 | COMT, carminomycin 4-O-methyltransferase; anthracy | 99.32 | |
| 2pt6_A | 321 | Spermidine synthase; transferase, structural genom | 99.32 | |
| 3thr_A | 293 | Glycine N-methyltransferase; GNMT, folate, methylt | 99.32 | |
| 2as0_A | 396 | Hypothetical protein PH1915; RNA methyltransferase | 99.32 | |
| 3reo_A | 368 | (ISO)eugenol O-methyltransferase; directed evoluti | 99.32 | |
| 2xyq_A | 290 | Putative 2'-O-methyl transferase; transferase-vira | 99.32 | |
| 2h00_A | 254 | Methyltransferase 10 domain containing protein; st | 99.31 | |
| 1xj5_A | 334 | Spermidine synthase 1; structural genomics, protei | 99.31 | |
| 3bt7_A | 369 | TRNA (uracil-5-)-methyltransferase; methyluridine, | 99.31 | |
| 1r18_A | 227 | Protein-L-isoaspartate(D-aspartate)-O-methyltrans; | 99.3 | |
| 1wy7_A | 207 | Hypothetical protein PH1948; seven-stranded beta s | 99.3 | |
| 3tm4_A | 373 | TRNA (guanine N2-)-methyltransferase TRM14; rossma | 99.3 | |
| 1dl5_A | 317 | Protein-L-isoaspartate O-methyltransferase; isoasp | 99.3 | |
| 3gdh_A | 241 | Trimethylguanosine synthase homolog; M7G, CAP, dim | 99.3 | |
| 3opn_A | 232 | Putative hemolysin; structural genomics, PSI-2, pr | 99.29 | |
| 2ip2_A | 334 | Probable phenazine-specific methyltransferase; pyo | 99.29 | |
| 3bzb_A | 281 | Uncharacterized protein; RED ALGA, protein structu | 99.29 | |
| 2p41_A | 305 | Type II methyltransferase; vizier, viral enzymes i | 99.29 | |
| 1p91_A | 269 | Ribosomal RNA large subunit methyltransferase A; R | 99.29 | |
| 3iv6_A | 261 | Putative Zn-dependent alcohol dehydrogenase; alpha | 99.28 | |
| 3sso_A | 419 | Methyltransferase; macrolide, natural product, ros | 99.27 | |
| 4a6d_A | 353 | Hydroxyindole O-methyltransferase; melatonin, circ | 99.27 | |
| 3p9c_A | 364 | Caffeic acid O-methyltransferase; S-adenosylmethio | 99.27 | |
| 1vbf_A | 231 | 231AA long hypothetical protein-L-isoaspartate O- | 99.27 | |
| 2oxt_A | 265 | Nucleoside-2'-O-methyltransferase; flavivirus, vir | 99.26 | |
| 2jjq_A | 425 | Uncharacterized RNA methyltransferase pyrab10780; | 99.26 | |
| 2qe6_A | 274 | Uncharacterized protein TFU_2867; putative methylt | 99.26 | |
| 3lst_A | 348 | CALO1 methyltransferase; calicheamicin, enediyne, | 99.25 | |
| 2b2c_A | 314 | Spermidine synthase; beta-alpha, transferase; 2.50 | 99.25 | |
| 2avn_A | 260 | Ubiquinone/menaquinone biosynthesis methyltransfe | 99.24 | |
| 1fp2_A | 352 | Isoflavone O-methyltransferase; protein-product co | 99.24 | |
| 2wa2_A | 276 | Non-structural protein 5; transferase, S-adenosyl- | 99.24 | |
| 2cmg_A | 262 | Spermidine synthase; transferase, putrescine amino | 99.24 | |
| 1o9g_A | 250 | RRNA methyltransferase; antibiotic resistance, Se- | 99.23 | |
| 3htx_A | 950 | HEN1; HEN1, small RNA methyltransferase, protein-R | 99.23 | |
| 1u2z_A | 433 | Histone-lysine N-methyltransferase, H3 lysine-79 s | 99.23 | |
| 2y1w_A | 348 | Histone-arginine methyltransferase CARM1; histone | 99.23 | |
| 1fp1_D | 372 | Isoliquiritigenin 2'-O-methyltransferase; protein- | 99.23 | |
| 1jg1_A | 235 | PIMT;, protein-L-isoaspartate O-methyltransferase; | 99.23 | |
| 3q7e_A | 349 | Protein arginine N-methyltransferase 1; HET: SAH; | 99.22 | |
| 2aot_A | 292 | HMT, histamine N-methyltransferase; classic methyl | 99.22 | |
| 2qm3_A | 373 | Predicted methyltransferase; putative methyltransf | 99.2 | |
| 2fyt_A | 340 | Protein arginine N-methyltransferase 3; structural | 99.2 | |
| 3r0q_C | 376 | Probable protein arginine N-methyltransferase 4.2; | 99.2 | |
| 2f8l_A | 344 | Hypothetical protein LMO1582; structural genomics, | 99.19 | |
| 3b3j_A | 480 | Histone-arginine methyltransferase CARM1; protein | 99.19 | |
| 2pjd_A | 343 | Ribosomal RNA small subunit methyltransferase C; g | 99.18 | |
| 1ne2_A | 200 | Hypothetical protein TA1320; structural genomics, | 99.17 | |
| 2ld4_A | 176 | Anamorsin; methyltransferase-like fold, alpha/beta | 99.17 | |
| 2ih2_A | 421 | Modification methylase TAQI; DNA, DNA methyltransf | 99.17 | |
| 1g6q_1 | 328 | HnRNP arginine N-methyltransferase; SAM-binding do | 99.15 | |
| 1zg3_A | 358 | Isoflavanone 4'-O-methyltransferase; rossman fold, | 99.15 | |
| 4hc4_A | 376 | Protein arginine N-methyltransferase 6; HRMT1L6, S | 99.14 | |
| 2qfm_A | 364 | Spermine synthase; spermidine aminopropyltransfera | 99.12 | |
| 3fzg_A | 200 | 16S rRNA methylase; methyltransferase, plasmid, tr | 99.11 | |
| 1zq9_A | 285 | Probable dimethyladenosine transferase; SGC, struc | 99.1 | |
| 1af7_A | 274 | Chemotaxis receptor methyltransferase CHER; chemot | 99.1 | |
| 3evf_A | 277 | RNA-directed RNA polymerase NS5; NS5 methyltransfe | 99.06 | |
| 3axs_A | 392 | Probable N(2),N(2)-dimethylguanosine tRNA methylt | 99.05 | |
| 2px2_A | 269 | Genome polyprotein [contains: capsid protein C (co | 99.04 | |
| 2dul_A | 378 | N(2),N(2)-dimethylguanosine tRNA methyltransferas; | 99.04 | |
| 3ldg_A | 384 | Putative uncharacterized protein SMU.472; YPSC, me | 99.03 | |
| 3k0b_A | 393 | Predicted N6-adenine-specific DNA methylase; methy | 99.0 | |
| 3ldu_A | 385 | Putative methylase; structural genomics, PSI-2, pr | 99.0 | |
| 4auk_A | 375 | Ribosomal RNA large subunit methyltransferase M; Y | 99.0 | |
| 2h1r_A | 299 | Dimethyladenosine transferase, putative; SGC toron | 98.97 | |
| 3tqs_A | 255 | Ribosomal RNA small subunit methyltransferase A; p | 98.97 | |
| 3giw_A | 277 | Protein of unknown function DUF574; rossmann-fold | 98.97 | |
| 3gru_A | 295 | Dimethyladenosine transferase; rossman fold, ribos | 98.95 | |
| 3gcz_A | 282 | Polyprotein; flavivirus, RNA capping, methyltransf | 98.94 | |
| 2okc_A | 445 | Type I restriction enzyme stysji M protein; NP_813 | 98.92 | |
| 3p8z_A | 267 | Mtase, non-structural protein 5; methyltransferase | 98.86 | |
| 1qam_A | 244 | ERMC' methyltransferase; rRNA methyltransferase ER | 98.84 | |
| 2ar0_A | 541 | M.ecoki, type I restriction enzyme ecoki M protein | 98.83 | |
| 3o4f_A | 294 | Spermidine synthase; aminopropyltransferase, polya | 98.82 | |
| 3uzu_A | 279 | Ribosomal RNA small subunit methyltransferase A; s | 98.79 | |
| 3v97_A | 703 | Ribosomal RNA large subunit methyltransferase L; Y | 98.78 | |
| 1yub_A | 245 | Ermam, rRNA methyltransferase; MLS antibiotics; NM | 98.77 | |
| 1m6y_A | 301 | S-adenosyl-methyltransferase MRAW; SAM-dependent m | 98.77 | |
| 3lcv_B | 281 | Sisomicin-gentamicin resistance methylase SGM; ant | 98.76 | |
| 3ftd_A | 249 | Dimethyladenosine transferase; KSGA, rossmann-like | 98.76 | |
| 3lkd_A | 542 | Type I restriction-modification system methyltrans | 98.74 | |
| 3c6k_A | 381 | Spermine synthase; spermidine aminopropyltransfera | 98.73 | |
| 3s1s_A | 878 | Restriction endonuclease bpusi; PD--(D/E)XK cataly | 98.71 | |
| 3frh_A | 253 | 16S rRNA methylase; methyltransferase domain, heli | 98.69 | |
| 2qy6_A | 257 | UPF0209 protein YFCK; structural genomics, unknown | 98.68 | |
| 3lkz_A | 321 | Non-structural protein 5; flavivirus, methyltransf | 98.67 | |
| 4gqb_A | 637 | Protein arginine N-methyltransferase 5; TIM barrel | 98.67 | |
| 1qyr_A | 252 | KSGA, high level kasugamycin resistance protein, S | 98.65 | |
| 3fut_A | 271 | Dimethyladenosine transferase; methyltransferase, | 98.65 | |
| 3eld_A | 300 | Methyltransferase; flavivirus, RNA capping, guanyl | 98.64 | |
| 3r24_A | 344 | NSP16, 2'-O-methyl transferase; methyltransferase, | 98.63 | |
| 3khk_A | 544 | Type I restriction-modification system methylation | 98.59 | |
| 4azs_A | 569 | Methyltransferase WBDD; kinase; HET: AMP SAM; 2.15 | 98.56 | |
| 3cvo_A | 202 | Methyltransferase-like protein of unknown functio; | 98.55 | |
| 3ll7_A | 410 | Putative methyltransferase; methytransferase, stru | 98.53 | |
| 2r6z_A | 258 | UPF0341 protein in RSP 3' region; alpha-beta prote | 98.51 | |
| 3ua3_A | 745 | Protein arginine N-methyltransferase 5; TIM-barrel | 98.49 | |
| 3tka_A | 347 | Ribosomal RNA small subunit methyltransferase H; H | 98.47 | |
| 3ufb_A | 530 | Type I restriction-modification system methyltran | 98.4 | |
| 2oyr_A | 258 | UPF0341 protein YHIQ; alpha-beta protein, structur | 98.33 | |
| 2k4m_A | 153 | TR8_protein, UPF0146 protein MTH_1000; alpha+beta, | 98.32 | |
| 3g7u_A | 376 | Cytosine-specific methyltransferase; DNA-binding, | 98.27 | |
| 2wk1_A | 282 | NOVP; transferase, O-methyltransferase, novobiocin | 98.2 | |
| 1g55_A | 343 | DNA cytosine methyltransferase DNMT2; human DNA me | 98.18 | |
| 1wg8_A | 285 | Predicted S-adenosylmethionine-dependent methyltra | 98.08 | |
| 3ubt_Y | 331 | Modification methylase HAEIII; protein-DNA complex | 98.0 | |
| 2c7p_A | 327 | Modification methylase HHAI; DNA methyltransferase | 97.96 | |
| 3b5i_A | 374 | S-adenosyl-L-methionine:salicylic acid carboxyl me | 97.91 | |
| 2efj_A | 384 | 3,7-dimethylxanthine methyltransferase; SAM-depend | 97.79 | |
| 4h0n_A | 333 | DNMT2; SAH binding, transferase; HET: SAH; 2.71A { | 97.76 | |
| 2oo3_A | 283 | Protein involved in catabolism of external DNA; st | 97.62 | |
| 3qv2_A | 327 | 5-cytosine DNA methyltransferase; DNMT2, ehmeth; H | 97.54 | |
| 1m6e_X | 359 | S-adenosyl-L-methionnine:salicylic acid carboxyl m | 97.5 | |
| 1i4w_A | 353 | Mitochondrial replication protein MTF1; mitochondr | 97.35 | |
| 3me5_A | 482 | Cytosine-specific methyltransferase; structural ge | 97.33 | |
| 2zig_A | 297 | TTHA0409, putative modification methylase; methylt | 97.24 | |
| 3vyw_A | 308 | MNMC2; tRNA wobble uridine, modification enzyme, g | 97.22 | |
| 3pvc_A | 689 | TRNA 5-methylaminomethyl-2-thiouridine biosynthes | 96.77 | |
| 2qrv_A | 295 | DNA (cytosine-5)-methyltransferase 3A; DNA methylt | 96.51 | |
| 4ft4_B | 784 | DNA (cytosine-5)-methyltransferase 1; chromodomain | 96.49 | |
| 3swr_A | 1002 | DNA (cytosine-5)-methyltransferase 1; epigenetics, | 96.41 | |
| 1g60_A | 260 | Adenine-specific methyltransferase MBOIIA; structu | 96.27 | |
| 2py6_A | 409 | Methyltransferase FKBM; YP_546752.1, structural ge | 96.15 | |
| 3s2e_A | 340 | Zinc-containing alcohol dehydrogenase superfamily; | 96.01 | |
| 2zig_A | 297 | TTHA0409, putative modification methylase; methylt | 95.98 | |
| 4dkj_A | 403 | Cytosine-specific methyltransferase; CG-specificit | 95.91 | |
| 2dph_A | 398 | Formaldehyde dismutase; dismutation of aldehydes, | 95.89 | |
| 1f8f_A | 371 | Benzyl alcohol dehydrogenase; rossmann fold, oxido | 95.83 | |
| 3two_A | 348 | Mannitol dehydrogenase; cinnamyl-alcohol dehydroge | 95.82 | |
| 3tos_A | 257 | CALS11; methyltransferase, calicheamicin, structur | 95.8 | |
| 3ps9_A | 676 | TRNA 5-methylaminomethyl-2-thiouridine biosynthes | 95.66 | |
| 1boo_A | 323 | Protein (N-4 cytosine-specific methyltransferase P | 95.53 | |
| 2vz8_A | 2512 | Fatty acid synthase; transferase, phosphopantethei | 95.46 | |
| 1pl8_A | 356 | Human sorbitol dehydrogenase; NAD, oxidoreductase; | 95.42 | |
| 1uuf_A | 369 | YAHK, zinc-type alcohol dehydrogenase-like protein | 95.37 | |
| 3fwz_A | 140 | Inner membrane protein YBAL; TRKA-N domain, E.coli | 95.3 | |
| 3av4_A | 1330 | DNA (cytosine-5)-methyltransferase 1; CXXC-type zi | 95.2 | |
| 1g60_A | 260 | Adenine-specific methyltransferase MBOIIA; structu | 95.11 | |
| 4ej6_A | 370 | Putative zinc-binding dehydrogenase; structural ge | 95.11 | |
| 1lss_A | 140 | TRK system potassium uptake protein TRKA homolog; | 94.99 | |
| 3c85_A | 183 | Putative glutathione-regulated potassium-efflux S | 94.96 | |
| 1e3j_A | 352 | NADP(H)-dependent ketose reductase; oxidoreductase | 94.9 | |
| 3jv7_A | 345 | ADH-A; dehydrogenase, nucleotide binding, rossmann | 94.8 | |
| 3m6i_A | 363 | L-arabinitol 4-dehydrogenase; medium chain dehydro | 94.76 | |
| 1kol_A | 398 | Formaldehyde dehydrogenase; oxidoreductase; HET: N | 94.68 | |
| 2g1u_A | 155 | Hypothetical protein TM1088A; structural genomics, | 94.44 | |
| 3ic5_A | 118 | Putative saccharopine dehydrogenase; structural ge | 94.39 | |
| 3uog_A | 363 | Alcohol dehydrogenase; structural genomics, protei | 94.38 | |
| 3fpc_A | 352 | NADP-dependent alcohol dehydrogenase; oxydoreducta | 94.33 | |
| 2hwk_A | 320 | Helicase NSP2; rossman fold, alpha/beta/alpha, mul | 94.31 | |
| 2h6e_A | 344 | ADH-4, D-arabinose 1-dehydrogenase; rossman fold, | 94.08 | |
| 2aef_A | 234 | Calcium-gated potassium channel MTHK; rossmann fol | 93.93 | |
| 1piw_A | 360 | Hypothetical zinc-type alcohol dehydrogenase- like | 93.91 | |
| 3abi_A | 365 | Putative uncharacterized protein PH1688; L-lysine | 93.84 | |
| 1rjw_A | 339 | ADH-HT, alcohol dehydrogenase; oxidoreductase, NAD | 93.78 | |
| 3uko_A | 378 | Alcohol dehydrogenase class-3; alcohol dehydrogena | 93.73 | |
| 1pqw_A | 198 | Polyketide synthase; rossmann fold, dimer, structu | 93.72 | |
| 1eg2_A | 319 | Modification methylase RSRI; rossmann fold, exocyc | 93.53 | |
| 4eez_A | 348 | Alcohol dehydrogenase 1; site-saturation mutagenes | 93.5 | |
| 2hcy_A | 347 | Alcohol dehydrogenase 1; tetramer of asymmetric di | 93.45 | |
| 1boo_A | 323 | Protein (N-4 cytosine-specific methyltransferase P | 93.45 | |
| 3ip1_A | 404 | Alcohol dehydrogenase, zinc-containing; structural | 93.42 | |
| 1p0f_A | 373 | NADP-dependent alcohol dehydrogenase; ADH topology | 93.31 | |
| 3gms_A | 340 | Putative NADPH:quinone reductase; structural genom | 93.22 | |
| 1cdo_A | 374 | Alcohol dehydrogenase; oxidoreductase, oxidoreduct | 93.03 | |
| 2jhf_A | 374 | Alcohol dehydrogenase E chain; oxidoreductase, met | 92.94 | |
| 2cf5_A | 357 | Atccad5, CAD, cinnamyl alcohol dehydrogenase; lign | 92.93 | |
| 1e3i_A | 376 | Alcohol dehydrogenase, class II; HET: NAD; 2.08A { | 92.82 | |
| 1yqd_A | 366 | Sinapyl alcohol dehydrogenase; lignin, monolignol, | 92.8 | |
| 3llv_A | 141 | Exopolyphosphatase-related protein; NAD(P)-binding | 92.79 | |
| 2fzw_A | 373 | Alcohol dehydrogenase class III CHI chain; S-nitro | 92.79 | |
| 4b7c_A | 336 | Probable oxidoreductase; NADP cofactor, rossmann f | 92.75 | |
| 1jvb_A | 347 | NAD(H)-dependent alcohol dehydrogenase; archaeon, | 92.74 | |
| 1v3u_A | 333 | Leukotriene B4 12- hydroxydehydrogenase/prostaglan | 92.69 | |
| 3l4b_C | 218 | TRKA K+ channel protien TM1088B; potassium channel | 92.66 | |
| 3goh_A | 315 | Alcohol dehydrogenase, zinc-containing; NP_718042. | 92.65 | |
| 1vj0_A | 380 | Alcohol dehydrogenase, zinc-containing; TM0436, st | 92.57 | |
| 3nx4_A | 324 | Putative oxidoreductase; csgid, structural genomic | 92.44 | |
| 2d8a_A | 348 | PH0655, probable L-threonine 3-dehydrogenase; pyro | 92.27 | |
| 1eg2_A | 319 | Modification methylase RSRI; rossmann fold, exocyc | 91.99 | |
| 4fs3_A | 256 | Enoyl-[acyl-carrier-protein] reductase [NADPH] FA; | 91.93 | |
| 1id1_A | 153 | Putative potassium channel protein; RCK domain, E. | 91.88 | |
| 1wma_A | 276 | Carbonyl reductase [NADPH] 1; oxidoreductase; HET: | 91.55 | |
| 4eye_A | 342 | Probable oxidoreductase; structural genomics, niai | 91.5 | |
| 3pxx_A | 287 | Carveol dehydrogenase; structural genomics, seattl | 91.49 | |
| 4dvj_A | 363 | Putative zinc-dependent alcohol dehydrogenase Pro; | 91.45 | |
| 2j3h_A | 345 | NADP-dependent oxidoreductase P1; double bond redu | 91.35 | |
| 2hmt_A | 144 | YUAA protein; RCK, KTN, KTR, KTRA, ktrab, membrane | 91.24 | |
| 1iz0_A | 302 | Quinone oxidoreductase; APO-enzyme, riken structur | 91.12 | |
| 3jyn_A | 325 | Quinone oxidoreductase; rossmann fold, protein-NAD | 91.07 | |
| 2c0c_A | 362 | Zinc binding alcohol dehydrogenase, domain contain | 91.05 | |
| 2dq4_A | 343 | L-threonine 3-dehydrogenase; NAD-dependent, oxidor | 91.0 | |
| 2b5w_A | 357 | Glucose dehydrogenase; nucleotide binding motif, o | 90.85 | |
| 3oig_A | 266 | Enoyl-[acyl-carrier-protein] reductase [NADH]; fat | 90.78 | |
| 3qwb_A | 334 | Probable quinone oxidoreductase; rossmann fold, qu | 90.65 | |
| 1rjd_A | 334 | PPM1P, carboxy methyl transferase for protein phos | 90.54 | |
| 1xa0_A | 328 | Putative NADPH dependent oxidoreductases; structur | 90.3 | |
| 1lnq_A | 336 | MTHK channels, potassium channel related protein; | 90.29 | |
| 3iht_A | 174 | S-adenosyl-L-methionine methyl transferase; YP_165 | 90.27 | |
| 3k31_A | 296 | Enoyl-(acyl-carrier-protein) reductase; ssgcid, NI | 90.22 | |
| 3tjr_A | 301 | Short chain dehydrogenase; structural genomics, se | 90.22 | |
| 4eso_A | 255 | Putative oxidoreductase; NADP, structural genomics | 90.17 | |
| 3ijr_A | 291 | Oxidoreductase, short chain dehydrogenase/reducta; | 90.16 | |
| 1qor_A | 327 | Quinone oxidoreductase; HET: NAP; 2.20A {Escherich | 90.11 | |
| 1zkd_A | 387 | DUF185; NESG, RPR58, structural genomics, PSI, pro | 90.08 | |
| 3l9w_A | 413 | Glutathione-regulated potassium-efflux system Pro | 89.97 | |
| 3r6d_A | 221 | NAD-dependent epimerase/dehydratase; structural ge | 89.85 | |
| 2eih_A | 343 | Alcohol dehydrogenase; zinc ION binding protein, s | 89.76 | |
| 1wly_A | 333 | CAAR, 2-haloacrylate reductase; NADPH-dependent ox | 89.46 | |
| 4dup_A | 353 | Quinone oxidoreductase; PSI-biology, structural ge | 89.45 | |
| 4a2c_A | 346 | Galactitol-1-phosphate 5-dehydrogenase; oxidoreduc | 89.4 | |
| 3gaz_A | 343 | Alcohol dehydrogenase superfamily protein; oxidore | 89.14 | |
| 3o38_A | 266 | Short chain dehydrogenase; tuberculosis, ortholog | 89.11 | |
| 1tt7_A | 330 | YHFP; alcohol dehydrogenase, Zn-dependent, NAD, st | 89.03 | |
| 3edm_A | 259 | Short chain dehydrogenase; structural genomics, ox | 88.95 | |
| 3grk_A | 293 | Enoyl-(acyl-carrier-protein) reductase (NADH); ssg | 88.95 | |
| 3e48_A | 289 | Putative nucleoside-diphosphate-sugar epimerase; a | 88.88 | |
| 3ek2_A | 271 | Enoyl-(acyl-carrier-protein) reductase (NADH); ssg | 88.73 | |
| 1yb5_A | 351 | Quinone oxidoreductase; medium-chain dehydrogenase | 88.68 | |
| 3ruf_A | 351 | WBGU; rossmann fold, UDP-hexose 4-epimerase, isome | 88.62 | |
| 4ina_A | 405 | Saccharopine dehydrogenase; structural genomics, P | 88.61 | |
| 3v2g_A | 271 | 3-oxoacyl-[acyl-carrier-protein] reductase; struct | 88.35 | |
| 3fbg_A | 346 | Putative arginate lyase; structural genomics, unkn | 88.08 | |
| 1ja9_A | 274 | 4HNR, 1,3,6,8-tetrahydroxynaphthalene reductase; p | 87.99 | |
| 3ius_A | 286 | Uncharacterized conserved protein; APC63810, silic | 87.85 | |
| 2zb4_A | 357 | Prostaglandin reductase 2; rossmann fold, alternat | 87.58 | |
| 4dcm_A | 375 | Ribosomal RNA large subunit methyltransferase G; 2 | 87.58 | |
| 2j8z_A | 354 | Quinone oxidoreductase; medium-chain dehydrogenase | 87.28 | |
| 4fgs_A | 273 | Probable dehydrogenase protein; PSI-biology, nysgr | 87.27 | |
| 2eez_A | 369 | Alanine dehydrogenase; TTHA0216, structural genomi | 87.24 | |
| 3is3_A | 270 | 17BETA-hydroxysteroid dehydrogenase; short chain d | 87.11 | |
| 3sju_A | 279 | Keto reductase; short-chain dehydrogenase, oxidore | 86.91 | |
| 3pgx_A | 280 | Carveol dehydrogenase; structural genomics, seattl | 86.88 | |
| 3ksu_A | 262 | 3-oxoacyl-acyl carrier protein reductase; structur | 86.8 | |
| 3dqp_A | 219 | Oxidoreductase YLBE; alpha-beta protein., structur | 86.76 | |
| 3r3s_A | 294 | Oxidoreductase; structural genomics, csgid, center | 86.71 | |
| 3sx2_A | 278 | Putative 3-ketoacyl-(acyl-carrier-protein) reduct; | 86.7 | |
| 2gn4_A | 344 | FLAA1 protein, UDP-GLCNAC C6 dehydratase; rossmann | 86.62 | |
| 3krt_A | 456 | Crotonyl COA reductase; structural genomics, prote | 86.55 | |
| 3ioy_A | 319 | Short-chain dehydrogenase/reductase SDR; structura | 86.39 | |
| 2cdc_A | 366 | Glucose dehydrogenase glucose 1-dehydrogenase, DHG | 86.29 | |
| 2vn8_A | 375 | Reticulon-4-interacting protein 1; mitochondrion, | 86.25 | |
| 4e6p_A | 259 | Probable sorbitol dehydrogenase (L-iditol 2-dehyd; | 86.18 | |
| 3qvo_A | 236 | NMRA family protein; structural genomics, PSI-biol | 85.91 | |
| 4egf_A | 266 | L-xylulose reductase; structural genomics, ssgcid, | 85.9 | |
| 4f6c_A | 427 | AUSA reductase domain protein; thioester reductase | 85.89 | |
| 3qiv_A | 253 | Short-chain dehydrogenase or 3-oxoacyl-[acyl-CARR | 85.88 | |
| 3tqh_A | 321 | Quinone oxidoreductase; HET: NDP; 2.44A {Coxiella | 85.85 | |
| 3oec_A | 317 | Carveol dehydrogenase (mytha.01326.C, A0R518 HOMO; | 85.29 | |
| 1sny_A | 267 | Sniffer CG10964-PA; alpha and beta protein, rossma | 85.17 | |
| 3rkr_A | 262 | Short chain oxidoreductase; rossmann fold; HET: NA | 85.14 | |
| 3ucx_A | 264 | Short chain dehydrogenase; ssgcid, seattle structu | 85.02 | |
| 2yut_A | 207 | Putative short-chain oxidoreductase; alpha and bet | 84.99 | |
| 3ggo_A | 314 | Prephenate dehydrogenase; TYRA, HPP, NADH, alpha-b | 84.68 | |
| 3tfo_A | 264 | Putative 3-oxoacyl-(acyl-carrier-protein) reducta; | 84.4 | |
| 3awd_A | 260 | GOX2181, putative polyol dehydrogenase; oxidoreduc | 84.08 | |
| 1fmc_A | 255 | 7 alpha-hydroxysteroid dehydrogenase; short-chain | 84.05 | |
| 3h7a_A | 252 | Short chain dehydrogenase; oxidoreductase, PSI-2, | 83.86 | |
| 3ftp_A | 270 | 3-oxoacyl-[acyl-carrier protein] reductase; ssgcid | 83.76 | |
| 3u5t_A | 267 | 3-oxoacyl-[acyl-carrier-protein] reductase; struct | 83.45 | |
| 1ae1_A | 273 | Tropinone reductase-I; oxidoreductase, tropane alk | 83.38 | |
| 3gvc_A | 277 | Oxidoreductase, probable short-chain type dehydrog | 83.36 | |
| 3tsc_A | 277 | Putative oxidoreductase; structural genomics, seat | 83.22 | |
| 3ged_A | 247 | Short-chain dehydrogenase/reductase SDR; SCOR, ros | 83.22 | |
| 3dii_A | 247 | Short-chain dehydrogenase/reductase SDR; SCOR, ros | 83.12 | |
| 3lf2_A | 265 | Short chain oxidoreductase Q9HYA2; SDR, SCOR, ross | 82.98 | |
| 1gee_A | 261 | Glucose 1-dehydrogenase; short-chain dehydrogenase | 82.93 | |
| 3trk_A | 324 | Nonstructural polyprotein; hydrolase; 2.40A {Chiku | 82.91 | |
| 2ae2_A | 260 | Protein (tropinone reductase-II); oxidoreductase, | 82.83 | |
| 3l77_A | 235 | Short-chain alcohol dehydrogenase; oxidoreductase; | 82.7 | |
| 2wyu_A | 261 | Enoyl-[acyl carrier protein] reductase; oxidoreduc | 82.69 | |
| 3gqv_A | 371 | Enoyl reductase; medium-chain reductase (MDR super | 82.65 | |
| 4imr_A | 275 | 3-oxoacyl-(acyl-carrier-protein) reductase; oxidor | 82.64 | |
| 4dqx_A | 277 | Probable oxidoreductase protein; structural genomi | 82.35 | |
| 3f9i_A | 249 | 3-oxoacyl-[acyl-carrier-protein] reductase; 3-keto | 82.18 | |
| 4fn4_A | 254 | Short chain dehydrogenase; NADH-binding, rossmann | 82.09 | |
| 1yb1_A | 272 | 17-beta-hydroxysteroid dehydrogenase type XI; shor | 82.06 | |
| 2pd4_A | 275 | Enoyl-[acyl-carrier-protein] reductase [NADH]; ant | 82.04 | |
| 3nzo_A | 399 | UDP-N-acetylglucosamine 4,6-dehydratase; structura | 81.96 | |
| 2bgk_A | 278 | Rhizome secoisolariciresinol dehydrogenase; oxidor | 81.76 | |
| 3o26_A | 311 | Salutaridine reductase; short chain dehydrogenase/ | 81.61 | |
| 3h2s_A | 224 | Putative NADH-flavin reductase; Q03B84, NESG, LCR1 | 81.59 | |
| 4a0s_A | 447 | Octenoyl-COA reductase/carboxylase; oxidoreductase | 81.56 | |
| 3ew7_A | 221 | LMO0794 protein; Q8Y8U8_lismo, putative NAD-depend | 81.55 | |
| 3e9n_A | 245 | Putative short-chain dehydrogenase/reductase; stru | 81.49 | |
| 3r1i_A | 276 | Short-chain type dehydrogenase/reductase; structur | 81.2 | |
| 3l6e_A | 235 | Oxidoreductase, short-chain dehydrogenase/reducta; | 81.13 | |
| 4ezb_A | 317 | Uncharacterized conserved protein; structural geno | 80.75 | |
| 3f1l_A | 252 | Uncharacterized oxidoreductase YCIK; E. coli, NADP | 80.7 | |
| 1zsy_A | 357 | Mitochondrial 2-enoyl thioester reductase; medium- | 80.67 | |
| 4g81_D | 255 | Putative hexonate dehydrogenase; enzyme function i | 80.5 | |
| 1g0o_A | 283 | Trihydroxynaphthalene reductase; protein-NADPH-act | 80.39 | |
| 3ai3_A | 263 | NADPH-sorbose reductase; rossmann-fold, NADPH-depe | 80.37 | |
| 2uyo_A | 310 | Hypothetical protein ML2640; putative methyltransf | 80.37 | |
| 2ew2_A | 316 | 2-dehydropantoate 2-reductase, putative; alpha-str | 80.35 | |
| 4da9_A | 280 | Short-chain dehydrogenase/reductase; structural ge | 80.27 | |
| 3gaf_A | 256 | 7-alpha-hydroxysteroid dehydrogenase; seattle stru | 80.25 | |
| 3v8b_A | 283 | Putative dehydrogenase, possibly 3-oxoacyl-[acyl- | 80.07 | |
| 3uve_A | 286 | Carveol dehydrogenase ((+)-trans-carveol dehydrog; | 80.03 |
| >4df3_A Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; NADP rossmann superfamily, S-adenosyl-L-M (SAM) binding, nucleolus; HET: SAM; 1.73A {Aeropyrum pernix} | Back alignment and structure |
|---|
Probab=100.00 E-value=2e-48 Score=343.14 Aligned_cols=227 Identities=47% Similarity=0.782 Sum_probs=211.3
Q ss_pred ceeeccc-ccCceEEEeCCcce--eeeccccCCccccCcceeEeecCCCceeeeeecCchhhHHHHHHHccccccCCCCC
Q 021911 68 KVVVEPH-RHEGVFIAKGKEDA--LVTKNLVAGEAVYNEKRISVQNEDGTKVEYRIWNPFRSKLAAAVLGGVDNIWIKPG 144 (305)
Q Consensus 68 ~~~~~~~-~~~gv~~~~~~~~~--l~t~~~~~~~~~y~e~~~~~~d~~~~~~~~~~~~~~~s~l~a~ll~~l~~~~~~~g 144 (305)
-|.|+|| +++|||+.+++++. |+|+|++|++++|+|+++.++.. |||.|||++|+|++.++..|++++++|+
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~l~t~n~~~g~~vyge~~~~~~~~-----e~r~w~p~rsklaa~i~~gl~~l~ikpG 78 (233)
T 4df3_A 4 VVSVSRHDRWRGVYVVELEDGSLRIATKNLVPGQRVYGERIFRYNGE-----EYREWNAYRSKLAAALLKGLIELPVKEG 78 (233)
T ss_dssp EEEEEECSSSTTEEEEEETTSCEEEEEECSSTTCCSSSCCEEEETTE-----EEEECCTTTCHHHHHHHTTCSCCCCCTT
T ss_pred eeEEeEecccCCEEEEEccCCceeEEEecCCCCCcccCceEEEcCCc-----eeeeECCCchHHHHHHHhchhhcCCCCC
Confidence 4789999 99999999998876 59999999999999999888764 9999999999999999999999999999
Q ss_pred CEEEEEecCCCccHHHHHhhhCCCcEEEEEeCChHHHHHHHHHHHcCCCeEEEEccCCCCcccccCCCcEeEEEEeCCCh
Q 021911 145 ARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKRTNVIPIIEDARHPAKYRMLVGMVDVIFSDVAQP 224 (305)
Q Consensus 145 ~~VLDlG~G~G~~t~~la~~~~~~~~V~avD~s~~~~~~l~~~a~~~~nI~~~~~D~~~~~~~~~~~~~fD~V~~d~~~~ 224 (305)
++|||+|||+|+++.++|+.++++++|||||+|+++++++.+.+++++||.++..|+..+..+..+..+||+|+++++++
T Consensus 79 ~~VldlG~G~G~~~~~la~~VG~~G~V~avD~s~~~~~~l~~~a~~~~ni~~V~~d~~~p~~~~~~~~~vDvVf~d~~~~ 158 (233)
T 4df3_A 79 DRILYLGIASGTTASHMSDIIGPRGRIYGVEFAPRVMRDLLTVVRDRRNIFPILGDARFPEKYRHLVEGVDGLYADVAQP 158 (233)
T ss_dssp CEEEEETCTTSHHHHHHHHHHCTTCEEEEEECCHHHHHHHHHHSTTCTTEEEEESCTTCGGGGTTTCCCEEEEEECCCCT
T ss_pred CEEEEecCcCCHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhHhhcCeeEEEEeccCccccccccceEEEEEEeccCC
Confidence 99999999999999999999999999999999999999998888888999999999999887777788999999999999
Q ss_pred hHHHHHHHHHhccCCCCcEEEEEEcccccCCCCchhhhHHHHHHHHHHCCCcEeEEeecCCCCCceEEEEEEEcC
Q 021911 225 DQARILALNASYFLKAGGHFVISIKANCIDSTVPAEAVFQSEVKKLQQDQFKPFEQVTLEPFERDHACVVGGYRM 299 (305)
Q Consensus 225 ~~~~~l~~~a~~~LkpGG~lv~s~~~~~i~~~~~~~~v~~~~~~~l~~~Gf~~~e~~~l~p~~~~~~~vv~~~~~ 299 (305)
++.+.+..+++++|||||+|++++++.++++..++..+|.+++++|++.||+++++++++||+++|++|+++|++
T Consensus 159 ~~~~~~l~~~~r~LKpGG~lvI~ik~r~~d~~~p~~~~~~~ev~~L~~~GF~l~e~i~L~pf~~~H~lv~~~~rR 233 (233)
T 4df3_A 159 EQAAIVVRNARFFLRDGGYMLMAIKARSIDVTTEPSEVYKREIKTLMDGGLEIKDVVHLDPFDRDHAMIYAVMRR 233 (233)
T ss_dssp THHHHHHHHHHHHEEEEEEEEEEEECCHHHHHTCCCHHHHHHHHHHHHTTCCEEEEEECTTTSTTEEEEEECC--
T ss_pred hhHHHHHHHHHHhccCCCEEEEEEecccCCCCCChHHHHHHHHHHHHHCCCEEEEEEccCCCCCceEEEEEEEeC
Confidence 988777779999999999999999989988888888899999999999999999999999999999999999875
|
| >3id6_C Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; C/D guide RNA, 2'-O-methylation, coiled-coil, methyltransfer binding, rRNA processing; HET: SAM; 2.60A {Sulfolobus solfataricus} SCOP: c.66.1.0 PDB: 3id5_B* 3pla_E* | Back alignment and structure |
|---|
Probab=100.00 E-value=3.6e-44 Score=316.50 Aligned_cols=225 Identities=44% Similarity=0.752 Sum_probs=201.5
Q ss_pred eeecccccCceEEEe--CCcceeeeccccCCccccCcceeEeecCCCceeeeeecCchhhHHHHHHHccccccCCCCCCE
Q 021911 69 VVVEPHRHEGVFIAK--GKEDALVTKNLVAGEAVYNEKRISVQNEDGTKVEYRIWNPFRSKLAAAVLGGVDNIWIKPGAR 146 (305)
Q Consensus 69 ~~~~~~~~~gv~~~~--~~~~~l~t~~~~~~~~~y~e~~~~~~d~~~~~~~~~~~~~~~s~l~a~ll~~l~~~~~~~g~~ 146 (305)
+.|++|+++|||+.+ ++.+.|+|+|++|++++|.|..+.++.. +|+.|+|++|++++.++..|+.+.++|+++
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~t~~~~pg~~vy~e~~~~~~~~-----~yr~w~~~~skla~~ll~~l~~~~l~~g~~ 79 (232)
T 3id6_C 5 ITVKQTNMENIYECEFNDGSFRLCTRNLVPNFNVYGERLIKYEGV-----EYREWNAFRSKLAGAILKGLKTNPIRKGTK 79 (232)
T ss_dssp CEEEECSSTTEEEEECTTSCEEEEEECSSTTCCSSSCCEEEETTE-----EEEECCTTTCHHHHHHHTTCSCCSCCTTCE
T ss_pred EEEEeeccCcEEEEEccCCcceEEEecccCCCCcccceeeeecCc-----chhhhchHHHHHHHHHHhhhhhcCCCCCCE
Confidence 347799999999998 6778899999999999999999998764 899999999999999999998888999999
Q ss_pred EEEEecCCCccHHHHHhhhCCCcEEEEEeCChHHHHHHHHHHHcCCCeEEEEccCCCCcccccCCCcEeEEEEeCCChhH
Q 021911 147 VLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKRTNVIPIIEDARHPAKYRMLVGMVDVIFSDVAQPDQ 226 (305)
Q Consensus 147 VLDlG~G~G~~t~~la~~~~~~~~V~avD~s~~~~~~l~~~a~~~~nI~~~~~D~~~~~~~~~~~~~fD~V~~d~~~~~~ 226 (305)
|||+|||+|.++.++|+.+++.++|+|+|+|+.+++.+++.+++++||.+++.|++.+..+..+..+||+|++|++.++|
T Consensus 80 VLDlG~GtG~~t~~la~~v~~~G~V~avD~s~~~l~~l~~~a~~r~nv~~i~~Da~~~~~~~~~~~~~D~I~~d~a~~~~ 159 (232)
T 3id6_C 80 VLYLGAASGTTISHVSDIIELNGKAYGVEFSPRVVRELLLVAQRRPNIFPLLADARFPQSYKSVVENVDVLYVDIAQPDQ 159 (232)
T ss_dssp EEEETCTTSHHHHHHHHHHTTTSEEEEEECCHHHHHHHHHHHHHCTTEEEEECCTTCGGGTTTTCCCEEEEEECCCCTTH
T ss_pred EEEEeecCCHHHHHHHHHhCCCCEEEEEECcHHHHHHHHHHhhhcCCeEEEEcccccchhhhccccceEEEEecCCChhH
Confidence 99999999999999999998899999999999988888888888899999999999876554456799999999999999
Q ss_pred HHHHHHHHhccCCCCcEEEEEEcccccCCCCchhhhHHHHHHHHHHCCCcEeEEeecCCCCCceEEEEEEEc
Q 021911 227 ARILALNASYFLKAGGHFVISIKANCIDSTVPAEAVFQSEVKKLQQDQFKPFEQVTLEPFERDHACVVGGYR 298 (305)
Q Consensus 227 ~~~l~~~a~~~LkpGG~lv~s~~~~~i~~~~~~~~v~~~~~~~l~~~Gf~~~e~~~l~p~~~~~~~vv~~~~ 298 (305)
.+++..++.++|||||+|++++++.|++.+.++++++..++..|++++|+++++++++||+++|++|+++|+
T Consensus 160 ~~il~~~~~~~LkpGG~lvisik~~~~d~t~~~~e~~~~~~~~L~~~gf~~~~~~~l~p~~~~h~~v~~~~~ 231 (232)
T 3id6_C 160 TDIAIYNAKFFLKVNGDMLLVIKARSIDVTKDPKEIYKTEVEKLENSNFETIQIINLDPYDKDHAIVLSKYK 231 (232)
T ss_dssp HHHHHHHHHHHEEEEEEEEEEEC-------CCSSSSTTHHHHHHHHTTEEEEEEEECTTTCSSCEEEEEEEC
T ss_pred HHHHHHHHHHhCCCCeEEEEEEccCCcccCCCHHHHHHHHHHHHHHCCCEEEEEeccCCCcCceEEEEEEeC
Confidence 999886777799999999999999999999999999999999999999999999999999999999999986
|
| >2ipx_A RRNA 2'-O-methyltransferase fibrillarin; FBL, structural genomics, structural genomics consortium, SGC; HET: MTA; 1.82A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.1e-35 Score=259.95 Aligned_cols=233 Identities=79% Similarity=1.225 Sum_probs=194.8
Q ss_pred CCceeecccccCceEEEeCCcceeeeccccCCccccCcceeEeecCCCceeeeeecCchhhHHHHHHHccccccCCCCCC
Q 021911 66 GSKVVVEPHRHEGVFIAKGKEDALVTKNLVAGEAVYNEKRISVQNEDGTKVEYRIWNPFRSKLAAAVLGGVDNIWIKPGA 145 (305)
Q Consensus 66 g~~~~~~~~~~~gv~~~~~~~~~l~t~~~~~~~~~y~e~~~~~~d~~~~~~~~~~~~~~~s~l~a~ll~~l~~~~~~~g~ 145 (305)
|+|++||||+++|+|+..++.+.|.|.|+.++..+|.+..+.++. ...+++|+.|+|+.+++...++..|+.+.++++.
T Consensus 1 ~~~~~~~~~~~~g~~~~~~~~~~~~~~n~~~~~~vy~e~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 79 (233)
T 2ipx_A 1 GKNVMVEPHRHEGVFICRGKEDALVTKNLVPGESVYGEKRVSISE-GDDKIEYRAWNPFRSKLAAAILGGVDQIHIKPGA 79 (233)
T ss_dssp ----CCEECSSTTEEECC-----CEEECSSTTCCSSSCCEEEEC-----CEEEEECCTTTCHHHHHHHTTCSCCCCCTTC
T ss_pred CCceEEeecccCceEEEecCCceEEEEecCCCcccccceEEEecC-CCCceEEEEecccchhHHHHHHhHHheecCCCCC
Confidence 478999999999999999988899999999999999999998872 2256899999999999999998878877888999
Q ss_pred EEEEEecCCCccHHHHHhhhCCCcEEEEEeCChHHHHHHHHHHHcCCCeEEEEccCCCCcccccCCCcEeEEEEeCCChh
Q 021911 146 RVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKRTNVIPIIEDARHPAKYRMLVGMVDVIFSDVAQPD 225 (305)
Q Consensus 146 ~VLDlG~G~G~~t~~la~~~~~~~~V~avD~s~~~~~~l~~~a~~~~nI~~~~~D~~~~~~~~~~~~~fD~V~~d~~~~~ 225 (305)
+|||+|||+|.++.++++.+++.++|++||+|+.+++.+++.++.++|+++++.|+.+.........+||+|+++++.++
T Consensus 80 ~vLDlG~G~G~~~~~la~~~g~~~~v~gvD~s~~~i~~~~~~a~~~~~v~~~~~d~~~~~~~~~~~~~~D~V~~~~~~~~ 159 (233)
T 2ipx_A 80 KVLYLGAASGTTVSHVSDIVGPDGLVYAVEFSHRSGRDLINLAKKRTNIIPVIEDARHPHKYRMLIAMVDVIFADVAQPD 159 (233)
T ss_dssp EEEEECCTTSHHHHHHHHHHCTTCEEEEECCCHHHHHHHHHHHHHCTTEEEECSCTTCGGGGGGGCCCEEEEEECCCCTT
T ss_pred EEEEEcccCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHhhccCCeEEEEcccCChhhhcccCCcEEEEEEcCCCcc
Confidence 99999999999999999998767799999999988889999998888999999999875433334579999999999888
Q ss_pred HHHHHHHHHhccCCCCcEEEEEEcccccCCCCchhhhHHHHHHHHHHCCCcEeEEeecCCCCCceEEEEEEEcC
Q 021911 226 QARILALNASYFLKAGGHFVISIKANCIDSTVPAEAVFQSEVKKLQQDQFKPFEQVTLEPFERDHACVVGGYRM 299 (305)
Q Consensus 226 ~~~~l~~~a~~~LkpGG~lv~s~~~~~i~~~~~~~~v~~~~~~~l~~~Gf~~~e~~~l~p~~~~~~~vv~~~~~ 299 (305)
+.+.+..++.++|||||+|+++++..+.+.......++..+++.|+++||++++...++||+.+|++++++|++
T Consensus 160 ~~~~~~~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~~~~~~~~~~~~~~v~~~~~~ 233 (233)
T 2ipx_A 160 QTRIVALNAHTFLRNGGHFVISIKANCIDSTASAEAVFASEVKKMQQENMKPQEQLTLEPYERDHAVVVGVYRP 233 (233)
T ss_dssp HHHHHHHHHHHHEEEEEEEEEEEEHHHHCSSSCHHHHHHHHHHTTGGGTEEEEEEEECTTTSSSEEEEEEEECC
T ss_pred HHHHHHHHHHHHcCCCeEEEEEEcccccccCCCHHHHHHHHHHHHHHCCCceEEEEecCCccCCcEEEEEEeCC
Confidence 87776658999999999999988665556666666677777888889999999999999999999999999964
|
| >1nt2_A Fibrillarin-like PRE-rRNA processing protein; adeMet, binding motif, RNA binding protein; HET: SAM; 2.90A {Archaeoglobus fulgidus} SCOP: c.66.1.3 | Back alignment and structure |
|---|
Probab=100.00 E-value=1.7e-32 Score=238.58 Aligned_cols=208 Identities=44% Similarity=0.702 Sum_probs=181.9
Q ss_pred ccccCceEEEeCCcceeeeccccCCccccCcceeEeecCCCceeeeeecCchhhHHHHHHHccccccCCCCCCEEEEEec
Q 021911 73 PHRHEGVFIAKGKEDALVTKNLVAGEAVYNEKRISVQNEDGTKVEYRIWNPFRSKLAAAVLGGVDNIWIKPGARVLYLGA 152 (305)
Q Consensus 73 ~~~~~gv~~~~~~~~~l~t~~~~~~~~~y~e~~~~~~d~~~~~~~~~~~~~~~s~l~a~ll~~l~~~~~~~g~~VLDlG~ 152 (305)
||+++|+|+.+ +.|+|+|+.+ ++|+++.+ .+|+.|+|+++++.+.++..++ +.++++.+|||+||
T Consensus 2 ~~~~~~~~~~~---~~~~t~~~~~--~~Y~~~~~---------~~y~~~~~~~~~l~~~~~~~l~-~~~~~g~~VLDlGc 66 (210)
T 1nt2_A 2 KELMRNVYLLD---DTLVTKSKYG--SHYGEKVF---------DGYREWVPWRSKLAAMILKGHR-LKLRGDERVLYLGA 66 (210)
T ss_dssp CEEETTEEEET---TEEEEECSCC--CSSSCCEE---------TTEEECCGGGCHHHHHHHTSCC-CCCCSSCEEEEETC
T ss_pred CcccCcEEEEe---eeEeeccCCc--cccchhhh---------hhhhhcChhHHHHHHHHHhhcc-cCCCCCCEEEEECC
Confidence 79999999998 8899999987 89999876 2799999999999999887776 67788999999999
Q ss_pred CCCccHHHHHhhhCCCcEEEEEeCChHHHHHHHHHHHcCCCeEEEEccCCCCcccccCCCcEeEEEEeCCChhHHHHHHH
Q 021911 153 ASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKRTNVIPIIEDARHPAKYRMLVGMVDVIFSDVAQPDQARILAL 232 (305)
Q Consensus 153 G~G~~t~~la~~~~~~~~V~avD~s~~~~~~l~~~a~~~~nI~~~~~D~~~~~~~~~~~~~fD~V~~d~~~~~~~~~l~~ 232 (305)
|+|.++.++++.++ .++|++||+|+.+++.+++.++.+.|+.+++.|+..+..+....++||+|+++++.+++.+.+..
T Consensus 67 GtG~~~~~la~~~~-~~~V~gvD~s~~~l~~~~~~a~~~~~v~~~~~d~~~~~~~~~~~~~fD~V~~~~~~~~~~~~~l~ 145 (210)
T 1nt2_A 67 ASGTTVSHLADIVD-EGIIYAVEYSAKPFEKLLELVRERNNIIPLLFDASKPWKYSGIVEKVDLIYQDIAQKNQIEILKA 145 (210)
T ss_dssp TTSHHHHHHHHHTT-TSEEEEECCCHHHHHHHHHHHHHCSSEEEECSCTTCGGGTTTTCCCEEEEEECCCSTTHHHHHHH
T ss_pred cCCHHHHHHHHHcC-CCEEEEEECCHHHHHHHHHHHhcCCCeEEEEcCCCCchhhcccccceeEEEEeccChhHHHHHHH
Confidence 99999999999875 67999999999888888888887789999999998763322234799999999988888877445
Q ss_pred HHhccCCCCcEEEEEEcccccCCCCchhhhHHHHHHHHHHCCCcEeEEeecCCCCCceEEEEEEE
Q 021911 233 NASYFLKAGGHFVISIKANCIDSTVPAEAVFQSEVKKLQQDQFKPFEQVTLEPFERDHACVVGGY 297 (305)
Q Consensus 233 ~a~~~LkpGG~lv~s~~~~~i~~~~~~~~v~~~~~~~l~~~Gf~~~e~~~l~p~~~~~~~vv~~~ 297 (305)
+++++|||||+|+++++..|++...+++.++.++++.|+++ |++.+..+++||+++|+++++++
T Consensus 146 ~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~l~~~-f~~~~~~~~~p~~~~h~~~~~~~ 209 (210)
T 1nt2_A 146 NAEFFLKEKGEVVIMVKARSIDSTAEPEEVFKSVLKEMEGD-FKIVKHGSLMPYHRDHIFIHAYR 209 (210)
T ss_dssp HHHHHEEEEEEEEEEEEHHHHCTTSCHHHHHHHHHHHHHTT-SEEEEEEECTTTCTTEEEEEEEE
T ss_pred HHHHHhCCCCEEEEEEecCCccccCCHHHHHHHHHHHHHhh-cEEeeeecCCCCCCCcEEEEEEc
Confidence 99999999999999988777777777888888888889888 99999999999999999999875
|
| >1fbn_A MJ fibrillarin homologue; MJ proteins, ribosomal RNA processing, snoRNP, structural genomics, BSGC structure funded by NIH; 1.60A {Methanocaldococcus jannaschii} SCOP: c.66.1.3 PDB: 1g8s_A | Back alignment and structure |
|---|
Probab=100.00 E-value=2.8e-31 Score=233.39 Aligned_cols=221 Identities=44% Similarity=0.740 Sum_probs=188.9
Q ss_pred cccCceEEEeCCcc--eeeeccccCCccccCcceeEeecCCCceeeeeecCchhhHHHHHHHccccccCCCCCCEEEEEe
Q 021911 74 HRHEGVFIAKGKED--ALVTKNLVAGEAVYNEKRISVQNEDGTKVEYRIWNPFRSKLAAAVLGGVDNIWIKPGARVLYLG 151 (305)
Q Consensus 74 ~~~~gv~~~~~~~~--~l~t~~~~~~~~~y~e~~~~~~d~~~~~~~~~~~~~~~s~l~a~ll~~l~~~~~~~g~~VLDlG 151 (305)
|+++|+|+.+++++ .|+|.|..++..+|++..+.+... +|+.|||+++++.+.++..++.+.+.++.+|||+|
T Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~vyge~~~~~~~~-----~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~VLDlG 82 (230)
T 1fbn_A 8 EIFENIYEVDLGDGLKRIATKSIVKGKKVYDEKIIKIGDE-----EYRIWNPNKSKLAAAIIKGLKVMPIKRDSKILYLG 82 (230)
T ss_dssp EETTTEEEEECSSSCCCEEEECSSTTCCSSSCCEEEETTE-----EEEECCTTTCHHHHHHHTTCCCCCCCTTCEEEEES
T ss_pred cccCcEEEEecCCCceeeeEEccCCCCCccCceEEeeccc-----eeeeeCcchhHHHHHHHhcccccCCCCCCEEEEEc
Confidence 99999999998877 578999999999999999988764 89999999999998886667766778899999999
Q ss_pred cCCCccHHHHHhhhCCCcEEEEEeCChHHHHHHHHHHHcCCCeEEEEccCCCCcccccCCCcEeEEEEeCCChhHHHHHH
Q 021911 152 AASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKRTNVIPIIEDARHPAKYRMLVGMVDVIFSDVAQPDQARILA 231 (305)
Q Consensus 152 ~G~G~~t~~la~~~~~~~~V~avD~s~~~~~~l~~~a~~~~nI~~~~~D~~~~~~~~~~~~~fD~V~~d~~~~~~~~~l~ 231 (305)
||+|.++.++++.++ .++|++||+|+.+++.+.+.++..+|+.+++.|+..+..+.....+||+|+++++.+.+...+.
T Consensus 83 cG~G~~~~~la~~~~-~~~v~gvD~s~~~~~~a~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~D~v~~~~~~~~~~~~~l 161 (230)
T 1fbn_A 83 ASAGTTPSHVADIAD-KGIVYAIEYAPRIMRELLDACAERENIIPILGDANKPQEYANIVEKVDVIYEDVAQPNQAEILI 161 (230)
T ss_dssp CCSSHHHHHHHHHTT-TSEEEEEESCHHHHHHHHHHTTTCTTEEEEECCTTCGGGGTTTSCCEEEEEECCCSTTHHHHHH
T ss_pred ccCCHHHHHHHHHcC-CcEEEEEECCHHHHHHHHHHhhcCCCeEEEECCCCCcccccccCccEEEEEEecCChhHHHHHH
Confidence 999999999999975 6799999999988877777777668999999999875432222368999999998888877755
Q ss_pred HHHhccCCCCcEEEEEEcccccCCCCchhhhHHHHHHHHHHCCCcEeEEeecCCCCCceEEEEEEEcCC
Q 021911 232 LNASYFLKAGGHFVISIKANCIDSTVPAEAVFQSEVKKLQQDQFKPFEQVTLEPFERDHACVVGGYRMP 300 (305)
Q Consensus 232 ~~a~~~LkpGG~lv~s~~~~~i~~~~~~~~v~~~~~~~l~~~Gf~~~e~~~l~p~~~~~~~vv~~~~~~ 300 (305)
.++.++|||||+|+++.+..|.+...+...++.+++..|++.||++++..++.|++++|++++++|+++
T Consensus 162 ~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~l~~l~~~Gf~~~~~~~~~~~~~~~~~v~~~k~~~ 230 (230)
T 1fbn_A 162 KNAKWFLKKGGYGMIAIKARSIDVTKDPKEIFKEQKEILEAGGFKIVDEVDIEPFEKDHVMFVGIWEGK 230 (230)
T ss_dssp HHHHHHEEEEEEEEEEEEGGGTCSSSCHHHHHHHHHHHHHHHTEEEEEEEECTTTSTTEEEEEEEECCC
T ss_pred HHHHHhCCCCcEEEEEEecCCCCCCCCHHHhhHHHHHHHHHCCCEEEEEEccCCCccceEEEEEEeCCC
Confidence 599999999999999876666666666666777778888889999999999999999999999999764
|
| >1g8a_A Fibrillarin-like PRE-rRNA processing protein; rRNA binding, RNA binding, structural genomics, BSGC structure funded by NIH; 1.40A {Pyrococcus horikoshii} SCOP: c.66.1.3 PDB: 2nnw_B 3nmu_F* 3nvk_I* 3nvm_B 1pry_A | Back alignment and structure |
|---|
Probab=99.97 E-value=1.4e-29 Score=221.61 Aligned_cols=224 Identities=49% Similarity=0.770 Sum_probs=190.0
Q ss_pred eeecccccCceEEEeCCcc--eeeeccccCCccccCcceeEeecCCCceeeeeecCchhhHHHHHHHccccccCCCCCCE
Q 021911 69 VVVEPHRHEGVFIAKGKED--ALVTKNLVAGEAVYNEKRISVQNEDGTKVEYRIWNPFRSKLAAAVLGGVDNIWIKPGAR 146 (305)
Q Consensus 69 ~~~~~~~~~gv~~~~~~~~--~l~t~~~~~~~~~y~e~~~~~~d~~~~~~~~~~~~~~~s~l~a~ll~~l~~~~~~~g~~ 146 (305)
|.|++|++.++|+.+.+.. .+++.|+.++..+|++..+.... .+|+.|+|..+++.+.++..++.+.+.++.+
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~-----~~~~~~~p~~~~~~~~i~~~l~~~~~~~~~~ 76 (227)
T 1g8a_A 2 VEVKKHKFPGVYTVIDDDGSERIATKNLVPGQRVYGERVIKWEG-----EEYRIWNPNRSKLGAAIMNGLKNFPIKPGKS 76 (227)
T ss_dssp CEEEECSSTTEEEEECSSSCSEEEEECSSTTCCCTTCCEEEETT-----EEEEECCTTTCHHHHHHHTTCCCCCCCTTCE
T ss_pred ceeeeeccCceEEEecCCchhheeeecCCCCccccCceEEEecC-----eEEEEeCCCchhHHHHHHhhHHhcCCCCCCE
Confidence 4578899999999998664 67889998999999998776654 4899999999999999987777767888999
Q ss_pred EEEEecCCCccHHHHHhhhCCCcEEEEEeCChHHHHHHHHHHHcCCCeEEEEccCCCCcccccCCCcEeEEEEeCCChhH
Q 021911 147 VLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKRTNVIPIIEDARHPAKYRMLVGMVDVIFSDVAQPDQ 226 (305)
Q Consensus 147 VLDlG~G~G~~t~~la~~~~~~~~V~avD~s~~~~~~l~~~a~~~~nI~~~~~D~~~~~~~~~~~~~fD~V~~d~~~~~~ 226 (305)
|||+|||+|.++..+++.+++.++|+++|+|+.+++.+.+.++..+|+.+++.|+.+.........+||+|+++++.+++
T Consensus 77 vLDlG~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~D~v~~~~~~~~~ 156 (227)
T 1g8a_A 77 VLYLGIASGTTASHVSDIVGWEGKIFGIEFSPRVLRELVPIVEERRNIVPILGDATKPEEYRALVPKVDVIFEDVAQPTQ 156 (227)
T ss_dssp EEEETTTSTTHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHSSCTTEEEEECCTTCGGGGTTTCCCEEEEEECCCSTTH
T ss_pred EEEEeccCCHHHHHHHHHhCCCeEEEEEECCHHHHHHHHHHHhccCCCEEEEccCCCcchhhcccCCceEEEECCCCHhH
Confidence 99999999999999999987668999999999888888888877789999999998754322234689999999998888
Q ss_pred HHHHHHHHhccCCCCcEEEEEEcccccCCCCchhhhHHHHHHHHHHCCCcEeEEeecCCCCCceEEEEEEEc
Q 021911 227 ARILALNASYFLKAGGHFVISIKANCIDSTVPAEAVFQSEVKKLQQDQFKPFEQVTLEPFERDHACVVGGYR 298 (305)
Q Consensus 227 ~~~l~~~a~~~LkpGG~lv~s~~~~~i~~~~~~~~v~~~~~~~l~~~Gf~~~e~~~l~p~~~~~~~vv~~~~ 298 (305)
.+.+..++.++|||||+|+++++..+.+...+...++.+++..+.+. |++++..++.||+.+|++++++|+
T Consensus 157 ~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~-f~~~~~~~~~~~~~~~~~~~~~~~ 227 (227)
T 1g8a_A 157 AKILIDNAEVYLKRGGYGMIAVKSRSIDVTKEPEQVFREVERELSEY-FEVIERLNLEPYEKDHALFVVRKT 227 (227)
T ss_dssp HHHHHHHHHHHEEEEEEEEEEEEGGGTCTTSCHHHHHHHHHHHHHTT-SEEEEEEECTTTSSSEEEEEEECC
T ss_pred HHHHHHHHHHhcCCCCEEEEEEecCCCCCCCChhhhhHHHHHHHHhh-ceeeeEeccCcccCCCEEEEEEeC
Confidence 87744499999999999999976666666666667777888888777 999999999999999999999874
|
| >3m4x_A NOL1/NOP2/SUN family protein; mtase domain, PUA domain, RRM motif, transferase; 2.28A {Enterococcus faecium} | Back alignment and structure |
|---|
Probab=99.84 E-value=1e-20 Score=181.63 Aligned_cols=156 Identities=19% Similarity=0.185 Sum_probs=125.4
Q ss_pred CCccccCcceeEeecCCCceeeeeecCchhhHHHHHHHccccccCCCCCCEEEEEecCCCccHHHHHhhhCCCcEEEEEe
Q 021911 96 AGEAVYNEKRISVQNEDGTKVEYRIWNPFRSKLAAAVLGGVDNIWIKPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVE 175 (305)
Q Consensus 96 ~~~~~y~e~~~~~~d~~~~~~~~~~~~~~~s~l~a~ll~~l~~~~~~~g~~VLDlG~G~G~~t~~la~~~~~~~~V~avD 175 (305)
.....|.++.+++||+ .|++++.++ .++++.+|||+|||+|.++.++|+.+.+.+.|+|+|
T Consensus 77 ~~~~~~~~G~~~vQd~-------------ss~l~~~~L------~~~~g~~VLDlcaGpGgkt~~lA~~~~~~g~V~AvD 137 (456)
T 3m4x_A 77 GKSFLHQAGYEYSQEP-------------SAMIVGTAA------AAKPGEKVLDLCAAPGGKSTQLAAQMKGKGLLVTNE 137 (456)
T ss_dssp TTSHHHHTTSCEECCT-------------TTHHHHHHH------CCCTTCEEEESSCTTCHHHHHHHHHHTTCSEEEEEC
T ss_pred CCChHHhCCcEEEECH-------------HHHHHHHHc------CCCCCCEEEEECCCcCHHHHHHHHHcCCCCEEEEEe
Confidence 4567899999999998 899999988 578999999999999999999999987778999999
Q ss_pred CChHHHHHHHHHHHcC--CCeEEEEccCCCCcccccCCCcEeEEEEeCCC-------------------------hhHHH
Q 021911 176 FSHRSGRDLVNMAKKR--TNVIPIIEDARHPAKYRMLVGMVDVIFSDVAQ-------------------------PDQAR 228 (305)
Q Consensus 176 ~s~~~~~~l~~~a~~~--~nI~~~~~D~~~~~~~~~~~~~fD~V~~d~~~-------------------------~~~~~ 228 (305)
+|+.+++.+.++++.. .||.+++.|+...... ...+||+|++|+|| ..|.+
T Consensus 138 is~~rl~~~~~n~~r~g~~nv~v~~~Da~~l~~~--~~~~FD~Il~DaPCSg~G~~rr~p~~~~~~~~~~~~~l~~~Q~~ 215 (456)
T 3m4x_A 138 IFPKRAKILSENIERWGVSNAIVTNHAPAELVPH--FSGFFDRIVVDAPCSGEGMFRKDPNAIKEWTEESPLYCQKRQQE 215 (456)
T ss_dssp SSHHHHHHHHHHHHHHTCSSEEEECCCHHHHHHH--HTTCEEEEEEECCCCCGGGTTTCHHHHHHCCTTHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHcCCCceEEEeCCHHHhhhh--ccccCCEEEECCCCCCccccccCHHHhhhcCHHHHHHHHHHHHH
Confidence 9998877777766553 6899999998776432 24789999999995 13557
Q ss_pred HHHHHHhccCCCCcEEEEEEcccccCCCCchhhhHHHHHHHHHHCCCcEeE
Q 021911 229 ILALNASYFLKAGGHFVISIKANCIDSTVPAEAVFQSEVKKLQQDQFKPFE 279 (305)
Q Consensus 229 ~l~~~a~~~LkpGG~lv~s~~~~~i~~~~~~~~v~~~~~~~l~~~Gf~~~e 279 (305)
+|. ++.++|||||+|+|+| |++...+++.++ ...+++.+|+++.
T Consensus 216 iL~-~a~~~LkpGG~LvYsT--Cs~~~eEne~vv----~~~l~~~~~~l~~ 259 (456)
T 3m4x_A 216 ILS-SAIKMLKNKGQLIYST--CTFAPEENEEII----SWLVENYPVTIEE 259 (456)
T ss_dssp HHH-HHHHTEEEEEEEEEEE--SCCCGGGTHHHH----HHHHHHSSEEEEC
T ss_pred HHH-HHHHhcCCCcEEEEEE--eecccccCHHHH----HHHHHhCCCEEEe
Confidence 777 9999999999999999 777776666554 2233445565543
|
| >3ajd_A Putative methyltransferase MJ0026; tRNA, M5C, rossmann fold, structural genomics, riken structu genomics/proteomics initiative; 1.27A {Methanocaldococcus jannaschii} PDB: 3a4t_A | Back alignment and structure |
|---|
Probab=99.83 E-value=7e-20 Score=165.06 Aligned_cols=146 Identities=22% Similarity=0.231 Sum_probs=118.8
Q ss_pred cCCccccCcceeEeecCCCceeeeeecCchhhHHHHHHHccccccCCCCCCEEEEEecCCCccHHHHHhhhCCCcEEEEE
Q 021911 95 VAGEAVYNEKRISVQNEDGTKVEYRIWNPFRSKLAAAVLGGVDNIWIKPGARVLYLGAASGTTVSHVSDIVGPNGVVYAV 174 (305)
Q Consensus 95 ~~~~~~y~e~~~~~~d~~~~~~~~~~~~~~~s~l~a~ll~~l~~~~~~~g~~VLDlG~G~G~~t~~la~~~~~~~~V~av 174 (305)
+...+.|.++.+.+|+. .+++++.++ .+.++.+|||+|||+|.++.++++.+...++|+++
T Consensus 54 ~~~~~~~~~G~~~~qd~-------------~s~l~~~~l------~~~~g~~VLDlgaG~G~~t~~la~~~~~~~~v~av 114 (274)
T 3ajd_A 54 IGSTPEYLFGYYMPQSI-------------SSMIPPIVL------NPREDDFILDMCAAPGGKTTHLAQLMKNKGTIVAV 114 (274)
T ss_dssp TTSSHHHHTTSEEECCS-------------GGGHHHHHH------CCCTTCEEEETTCTTCHHHHHHHHHTTTCSEEEEE
T ss_pred cccChhhhCCeEEEeCH-------------HHHHHHHHh------CCCCcCEEEEeCCCccHHHHHHHHHcCCCCEEEEE
Confidence 45667899999999998 889988887 57889999999999999999999987555899999
Q ss_pred eCChHHHHHHHHHHHcC--CCeEEEEccCCCCccc-ccCCCcEeEEEEeCCC---------------------hhHHHHH
Q 021911 175 EFSHRSGRDLVNMAKKR--TNVIPIIEDARHPAKY-RMLVGMVDVIFSDVAQ---------------------PDQARIL 230 (305)
Q Consensus 175 D~s~~~~~~l~~~a~~~--~nI~~~~~D~~~~~~~-~~~~~~fD~V~~d~~~---------------------~~~~~~l 230 (305)
|+|+.+++.+.++++.. +|+.+++.|+...... .....+||+|++|+|| ..|.+++
T Consensus 115 D~~~~~l~~~~~~~~~~g~~~v~~~~~D~~~~~~~~~~~~~~fD~Vl~d~Pcs~~g~~~~~p~~~~~~~~~~~~~~~~~l 194 (274)
T 3ajd_A 115 EISKTRTKALKSNINRMGVLNTIIINADMRKYKDYLLKNEIFFDKILLDAPCSGNIIKDKNRNVSEEDIKYCSLRQKELI 194 (274)
T ss_dssp ESCHHHHHHHHHHHHHTTCCSEEEEESCHHHHHHHHHHTTCCEEEEEEEECCC------------HHHHTGGGTCHHHHH
T ss_pred CCCHHHHHHHHHHHHHhCCCcEEEEeCChHhcchhhhhccccCCEEEEcCCCCCCcccccCCCCCHHHHHHHHHHHHHHH
Confidence 99998777776666554 5899999998765431 0014689999999886 3467788
Q ss_pred HHHHhccCCCCcEEEEEEcccccCCCCchhhh
Q 021911 231 ALNASYFLKAGGHFVISIKANCIDSTVPAEAV 262 (305)
Q Consensus 231 ~~~a~~~LkpGG~lv~s~~~~~i~~~~~~~~v 262 (305)
. ++.++|||||+|+|+| |++...+++..+
T Consensus 195 ~-~~~~~LkpgG~lv~st--cs~~~~ene~~v 223 (274)
T 3ajd_A 195 D-IGIDLLKKDGELVYST--CSMEVEENEEVI 223 (274)
T ss_dssp H-HHHHHEEEEEEEEEEE--SCCCTTSSHHHH
T ss_pred H-HHHHhCCCCCEEEEEE--CCCChHHhHHHH
Confidence 7 9999999999999999 777777765544
|
| >1ixk_A Methyltransferase; open beta sheet; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.38 | Back alignment and structure |
|---|
Probab=99.82 E-value=7e-20 Score=168.39 Aligned_cols=156 Identities=23% Similarity=0.249 Sum_probs=123.2
Q ss_pred cCCccccCcceeEeecCCCceeeeeecCchhhHHHHHHHccccccCCCCCCEEEEEecCCCccHHHHHhhhCCCcEEEEE
Q 021911 95 VAGEAVYNEKRISVQNEDGTKVEYRIWNPFRSKLAAAVLGGVDNIWIKPGARVLYLGAASGTTVSHVSDIVGPNGVVYAV 174 (305)
Q Consensus 95 ~~~~~~y~e~~~~~~d~~~~~~~~~~~~~~~s~l~a~ll~~l~~~~~~~g~~VLDlG~G~G~~t~~la~~~~~~~~V~av 174 (305)
+.....|.++.+.+||. .|++++.++ .++++.+|||+|||+|.++.++++.+.+.++|+++
T Consensus 89 ~~~~~~~~~G~~~~qd~-------------~s~l~~~~l------~~~~g~~VLDlg~G~G~~t~~la~~~~~~~~v~av 149 (315)
T 1ixk_A 89 ITSTPEFLTGLIYIQEA-------------SSMYPPVAL------DPKPGEIVADMAAAPGGKTSYLAQLMRNDGVIYAF 149 (315)
T ss_dssp GGGSHHHHTTSEEECCH-------------HHHHHHHHH------CCCTTCEEEECCSSCSHHHHHHHHHTTTCSEEEEE
T ss_pred cccChhHhcceEEEeCH-------------HHHHHHHHh------CCCCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEE
Confidence 45667899999999998 889988887 57889999999999999999999988667899999
Q ss_pred eCChHHHHHHHHHHHcC--CCeEEEEccCCCCcccccCCCcEeEEEEeCCCh-------------------------hHH
Q 021911 175 EFSHRSGRDLVNMAKKR--TNVIPIIEDARHPAKYRMLVGMVDVIFSDVAQP-------------------------DQA 227 (305)
Q Consensus 175 D~s~~~~~~l~~~a~~~--~nI~~~~~D~~~~~~~~~~~~~fD~V~~d~~~~-------------------------~~~ 227 (305)
|+|+.+++.+.++++.. +||++++.|+..... ...+||+|++|+||. .|.
T Consensus 150 D~s~~~l~~a~~~~~~~g~~~v~~~~~D~~~~~~---~~~~fD~Il~d~Pcsg~g~~~~~p~~~~~~~~~~~~~~~~~q~ 226 (315)
T 1ixk_A 150 DVDENRLRETRLNLSRLGVLNVILFHSSSLHIGE---LNVEFDKILLDAPCTGSGTIHKNPERKWNRTMDDIKFCQGLQM 226 (315)
T ss_dssp CSCHHHHHHHHHHHHHHTCCSEEEESSCGGGGGG---GCCCEEEEEEECCTTSTTTCC--------CCHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHhCCCeEEEEECChhhccc---ccccCCEEEEeCCCCCcccccCChhHhhcCCHHHHHHHHHHHH
Confidence 99997777766666543 589999999987653 246899999998852 146
Q ss_pred HHHHHHHhccCCCCcEEEEEEcccccCCCCchhhhHHHHHHHHHHCCCcEeE
Q 021911 228 RILALNASYFLKAGGHFVISIKANCIDSTVPAEAVFQSEVKKLQQDQFKPFE 279 (305)
Q Consensus 228 ~~l~~~a~~~LkpGG~lv~s~~~~~i~~~~~~~~v~~~~~~~l~~~Gf~~~e 279 (305)
+++. ++.++|||||+|+|+| |++...+++..+ . ..+++.+|++++
T Consensus 227 ~~L~-~~~~~LkpGG~lv~st--cs~~~~Ene~~v-~---~~l~~~~~~~~~ 271 (315)
T 1ixk_A 227 RLLE-KGLEVLKPGGILVYST--CSLEPEENEFVI-Q---WALDNFDVELLP 271 (315)
T ss_dssp HHHH-HHHHHEEEEEEEEEEE--SCCCGGGTHHHH-H---HHHHHSSEEEEC
T ss_pred HHHH-HHHHhCCCCCEEEEEe--CCCChHHhHHHH-H---HHHhcCCCEEec
Confidence 7777 9999999999999999 666666655443 1 223456666543
|
| >3m6w_A RRNA methylase; rRNA methyltransferase, 5-methylcytidine, RSMF, adoMet, MULT specific, methyltransferase, transferase; HET: CXM SAM; 1.30A {Thermus thermophilus} PDB: 3m6v_A* 3m6u_A* 3m6x_A* | Back alignment and structure |
|---|
Probab=99.82 E-value=5e-20 Score=177.08 Aligned_cols=143 Identities=23% Similarity=0.272 Sum_probs=118.5
Q ss_pred cCCccccCcceeEeecCCCceeeeeecCchhhHHHHHHHccccccCCCCCCEEEEEecCCCccHHHHHhhhCCCcEEEEE
Q 021911 95 VAGEAVYNEKRISVQNEDGTKVEYRIWNPFRSKLAAAVLGGVDNIWIKPGARVLYLGAASGTTVSHVSDIVGPNGVVYAV 174 (305)
Q Consensus 95 ~~~~~~y~e~~~~~~d~~~~~~~~~~~~~~~s~l~a~ll~~l~~~~~~~g~~VLDlG~G~G~~t~~la~~~~~~~~V~av 174 (305)
+.....|.++.+.+||+ .|++++.++ .++++.+|||+|||+|.++.++|+.+.+.+.|+|+
T Consensus 72 ~~~~~~~~~G~~~vQd~-------------ss~l~a~~L------~~~~g~~VLDlgaGpG~kt~~LA~~~~~~g~V~Av 132 (464)
T 3m6w_A 72 PGPHPFFYAGLYYIQEP-------------SAQAVGVLL------DPKPGERVLDLAAAPGGKTTHLAARMGGKGLLLAN 132 (464)
T ss_dssp CSSSHHHHTTSEEECCT-------------TTHHHHHHH------CCCTTCEEEESSCTTCHHHHHHHHHTTTCSEEEEE
T ss_pred cccChHHhCCeEEEECH-------------HHHHHHHhc------CcCCCCEEEEEcCCcCHHHHHHHHhCCCCCEEEEE
Confidence 45567899999999998 899999888 57899999999999999999999998767899999
Q ss_pred eCChHHHHHHHHHHHcC--CCeEEEEccCCCCcccccCCCcEeEEEEeCCC---------h----------------hHH
Q 021911 175 EFSHRSGRDLVNMAKKR--TNVIPIIEDARHPAKYRMLVGMVDVIFSDVAQ---------P----------------DQA 227 (305)
Q Consensus 175 D~s~~~~~~l~~~a~~~--~nI~~~~~D~~~~~~~~~~~~~fD~V~~d~~~---------~----------------~~~ 227 (305)
|+|+.+++.+.++++.. . |.+++.|+...... ...+||+|++|+|| | .|.
T Consensus 133 Dis~~~l~~a~~n~~r~G~~-v~~~~~Da~~l~~~--~~~~FD~Il~D~PcSg~G~~rr~pd~~~~~~~~~~~~l~~~Q~ 209 (464)
T 3m6w_A 133 EVDGKRVRGLLENVERWGAP-LAVTQAPPRALAEA--FGTYFHRVLLDAPCSGEGMFRKDREAARHWGPSAPKRMAEVQK 209 (464)
T ss_dssp CSCHHHHHHHHHHHHHHCCC-CEEECSCHHHHHHH--HCSCEEEEEEECCCCCGGGTTTCTTSGGGCCTTHHHHHHHHHH
T ss_pred ECCHHHHHHHHHHHHHcCCe-EEEEECCHHHhhhh--ccccCCEEEECCCcCCccccccChHHhhhcCHHHHHHHHHHHH
Confidence 99997777776666543 4 88999998776532 24789999999996 2 257
Q ss_pred HHHHHHHhccCCCCcEEEEEEcccccCCCCchhhh
Q 021911 228 RILALNASYFLKAGGHFVISIKANCIDSTVPAEAV 262 (305)
Q Consensus 228 ~~l~~~a~~~LkpGG~lv~s~~~~~i~~~~~~~~v 262 (305)
+++. ++.++|||||+|+|+| |++...+++..+
T Consensus 210 ~iL~-~a~~~LkpGG~LvysT--Cs~~~eEne~vv 241 (464)
T 3m6w_A 210 ALLA-QASRLLGPGGVLVYST--CTFAPEENEGVV 241 (464)
T ss_dssp HHHH-HHHTTEEEEEEEEEEE--SCCCGGGTHHHH
T ss_pred HHHH-HHHHhcCCCcEEEEEe--ccCchhcCHHHH
Confidence 7787 9999999999999999 777776666554
|
| >2b9e_A NOL1/NOP2/SUN domain family, member 5 isoform 2; methytransferase, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.65A {Homo sapiens} SCOP: c.66.1.38 | Back alignment and structure |
|---|
Probab=99.82 E-value=3.4e-19 Score=163.39 Aligned_cols=146 Identities=20% Similarity=0.213 Sum_probs=118.5
Q ss_pred ccCCccccCcceeEeecCCCceeeeeecCchhhHHHHHHHccccccCCCCCCEEEEEecCCCccHHHHHhhhCCCcEEEE
Q 021911 94 LVAGEAVYNEKRISVQNEDGTKVEYRIWNPFRSKLAAAVLGGVDNIWIKPGARVLYLGAASGTTVSHVSDIVGPNGVVYA 173 (305)
Q Consensus 94 ~~~~~~~y~e~~~~~~d~~~~~~~~~~~~~~~s~l~a~ll~~l~~~~~~~g~~VLDlG~G~G~~t~~la~~~~~~~~V~a 173 (305)
.+.....|.++.+++||+ .|++++.++ .++++++|||+|||+|.++.++|+.+.+.+.|+|
T Consensus 72 ~~~~~~~~~~G~~~~Qd~-------------~s~l~~~~l------~~~~g~~VLDlcaG~G~kt~~la~~~~~~g~V~a 132 (309)
T 2b9e_A 72 DLHEHPLYRAGHLILQDR-------------ASCLPAMLL------DPPPGSHVIDACAAPGNKTSHLAALLKNQGKIFA 132 (309)
T ss_dssp CCTTSHHHHTTSEEECCT-------------GGGHHHHHH------CCCTTCEEEESSCTTCHHHHHHHHHHTTCSEEEE
T ss_pred CcccChHHHCCeEEEECH-------------HHHHHHHHh------CCCCCCEEEEeCCChhHHHHHHHHHhCCCCEEEE
Confidence 356678899999999998 899999988 6889999999999999999999999877789999
Q ss_pred EeCChHHHHHHHHHHHcC--CCeEEEEccCCCCcccccCCCcEeEEEEeCCC---------hh-----------------
Q 021911 174 VEFSHRSGRDLVNMAKKR--TNVIPIIEDARHPAKYRMLVGMVDVIFSDVAQ---------PD----------------- 225 (305)
Q Consensus 174 vD~s~~~~~~l~~~a~~~--~nI~~~~~D~~~~~~~~~~~~~fD~V~~d~~~---------~~----------------- 225 (305)
+|+++.+++.+.++++.. .||++++.|+...........+||+|++|+|| |+
T Consensus 133 ~D~~~~~l~~~~~n~~r~g~~~v~~~~~D~~~~~~~~~~~~~fD~Vl~D~PcSg~G~~~r~pd~~~~~~~~~~~~~~l~~ 212 (309)
T 2b9e_A 133 FDLDAKRLASMATLLARAGVSCCELAEEDFLAVSPSDPRYHEVHYILLDPSCSGSGMPSRQLEEPGAGTPSPVRLHALAG 212 (309)
T ss_dssp EESCHHHHHHHHHHHHHTTCCSEEEEECCGGGSCTTCGGGTTEEEEEECCCCCC------------------CCHHHHHH
T ss_pred EeCCHHHHHHHHHHHHHcCCCeEEEEeCChHhcCccccccCCCCEEEEcCCcCCCCCCccCCChhhhccCCHHHHHHHHH
Confidence 999998888777777654 68999999987764321112579999999985 11
Q ss_pred -HHHHHHHHHhccCCCCcEEEEEEcccccCCCCchhhh
Q 021911 226 -QARILALNASYFLKAGGHFVISIKANCIDSTVPAEAV 262 (305)
Q Consensus 226 -~~~~l~~~a~~~LkpGG~lv~s~~~~~i~~~~~~~~v 262 (305)
|.++|. ++.++|+ +|+|+|+| |++...+++.++
T Consensus 213 ~Q~~iL~-~a~~~l~-gG~lvYsT--Cs~~~~Ene~~v 246 (309)
T 2b9e_A 213 FQQRALC-HALTFPS-LQRLVYST--CSLCQEENEDVV 246 (309)
T ss_dssp HHHHHHH-HHTTCTT-CCEEEEEE--SCCCGGGTHHHH
T ss_pred HHHHHHH-HHHhccC-CCEEEEEC--CCCChHHhHHHH
Confidence 345666 8888887 99999999 777777766554
|
| >2frx_A Hypothetical protein YEBU; rossmann-type S-adenosylmethionine-dependent methyltransfera domain; 2.90A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.80 E-value=3.5e-19 Score=172.38 Aligned_cols=144 Identities=23% Similarity=0.254 Sum_probs=119.1
Q ss_pred cCCccccCcceeEeecCCCceeeeeecCchhhHHHHHHHccccccCCC--CCCEEEEEecCCCccHHHHHhhhCCCcEEE
Q 021911 95 VAGEAVYNEKRISVQNEDGTKVEYRIWNPFRSKLAAAVLGGVDNIWIK--PGARVLYLGAASGTTVSHVSDIVGPNGVVY 172 (305)
Q Consensus 95 ~~~~~~y~e~~~~~~d~~~~~~~~~~~~~~~s~l~a~ll~~l~~~~~~--~g~~VLDlG~G~G~~t~~la~~~~~~~~V~ 172 (305)
+.....|.++.+++||+ .|++++.++ .+. ++.+|||+|||+|.++.++|+.+.+.+.|+
T Consensus 86 ~~~~~~~~~G~~~~Qd~-------------~s~l~~~~L------~~~~~~g~~VLDl~aGpG~kt~~lA~~~~~~g~V~ 146 (479)
T 2frx_A 86 LGSTAEHLSGLFYIQEA-------------SSMLPVAAL------FADGNAPQRVMDVAAAPGSKTTQISARMNNEGAIL 146 (479)
T ss_dssp GGGSHHHHTTSEEECCH-------------HHHHHHHHH------TTTTCCCSEEEESSCTTSHHHHHHHHHTTTCSEEE
T ss_pred cccChHHhCcEEEEECH-------------HHHHHHHHh------CcccCCCCEEEEeCCCCCHHHHHHHHhCCCCCEEE
Confidence 34567889999999998 899988887 466 899999999999999999999987678999
Q ss_pred EEeCChHHHHHHHHHHHcC--CCeEEEEccCCCCcccccCCCcEeEEEEeCCCh-------------------------h
Q 021911 173 AVEFSHRSGRDLVNMAKKR--TNVIPIIEDARHPAKYRMLVGMVDVIFSDVAQP-------------------------D 225 (305)
Q Consensus 173 avD~s~~~~~~l~~~a~~~--~nI~~~~~D~~~~~~~~~~~~~fD~V~~d~~~~-------------------------~ 225 (305)
|+|+|+.+++.+.++++.. .||.+++.|+...... ....||+|++|+||. .
T Consensus 147 avDis~~~l~~~~~n~~r~g~~nv~~~~~D~~~~~~~--~~~~fD~Il~D~PcSg~G~~~~~pd~~~~~~~~~~~~l~~~ 224 (479)
T 2frx_A 147 ANEFSASRVKVLHANISRCGISNVALTHFDGRVFGAA--VPEMFDAILLDAPCSGEGVVRKDPDALKNWSPESNQEIAAT 224 (479)
T ss_dssp EECSSHHHHHHHHHHHHHHTCCSEEEECCCSTTHHHH--STTCEEEEEEECCCCCGGGGGTCTTSSSSCCHHHHHHHHHH
T ss_pred EEECCHHHHHHHHHHHHHcCCCcEEEEeCCHHHhhhh--ccccCCEEEECCCcCCcccccCCHHHHhhcCHhHHHHHHHH
Confidence 9999998877777766543 5899999999876532 246899999999852 2
Q ss_pred HHHHHHHHHhccCCCCcEEEEEEcccccCCCCchhhh
Q 021911 226 QARILALNASYFLKAGGHFVISIKANCIDSTVPAEAV 262 (305)
Q Consensus 226 ~~~~l~~~a~~~LkpGG~lv~s~~~~~i~~~~~~~~v 262 (305)
|.++|. ++.++|||||+|+|+| |++...+++.++
T Consensus 225 q~~iL~-~a~~~LkpGG~LvysT--cs~~~~Ene~vv 258 (479)
T 2frx_A 225 QRELID-SAFHALRPGGTLVYST--CTLNQEENEAVC 258 (479)
T ss_dssp HHHHHH-HHHHHEEEEEEEEEEE--SCCSSTTTHHHH
T ss_pred HHHHHH-HHHHhcCCCCEEEEec--ccCCcccCHHHH
Confidence 567777 9999999999999999 777777776544
|
| >2yxl_A PH0851 protein, 450AA long hypothetical FMU protein; FMU-homolog, methyltransferase, structural genomics, NPPSFA; HET: SFG; 2.55A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=99.80 E-value=6.7e-19 Score=169.42 Aligned_cols=178 Identities=25% Similarity=0.380 Sum_probs=132.5
Q ss_pred ccCceEEEeC--Cccee-e-eccccCCccccCcceeEeecCCCceeeeeecCchhhHHHHHHHccccccCCCCCCEEEEE
Q 021911 75 RHEGVFIAKG--KEDAL-V-TKNLVAGEAVYNEKRISVQNEDGTKVEYRIWNPFRSKLAAAVLGGVDNIWIKPGARVLYL 150 (305)
Q Consensus 75 ~~~gv~~~~~--~~~~l-~-t~~~~~~~~~y~e~~~~~~d~~~~~~~~~~~~~~~s~l~a~ll~~l~~~~~~~g~~VLDl 150 (305)
+..|+-+.+. .++.+ + ....+.....|.++.+++||. .|++++.++ .+.++.+|||+
T Consensus 206 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~qd~-------------~s~l~~~~l------~~~~g~~VLDl 266 (450)
T 2yxl_A 206 EEDGVEVVRSERVPTILKIKGPYNFDTSSAFNEGKIIVQEE-------------ASAVASIVL------DPKPGETVVDL 266 (450)
T ss_dssp HHTTCCEEECSSCTTEEEEESCCCTTSCHHHHTTSEEECCH-------------HHHHHHHHH------CCCTTCEEEES
T ss_pred HhCCccceecCccCceEEeCCCCCcccCchhhCceEEecCc-------------hhHHHHHhc------CCCCcCEEEEe
Confidence 4455544443 34444 3 223456678899999999998 889988887 57889999999
Q ss_pred ecCCCccHHHHHhhhCCCcEEEEEeCChHHHHHHHHHHHcC--CCeEEEEccCCCCcccccCCCcEeEEEEeCCCh----
Q 021911 151 GAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKR--TNVIPIIEDARHPAKYRMLVGMVDVIFSDVAQP---- 224 (305)
Q Consensus 151 G~G~G~~t~~la~~~~~~~~V~avD~s~~~~~~l~~~a~~~--~nI~~~~~D~~~~~~~~~~~~~fD~V~~d~~~~---- 224 (305)
|||+|.++.++++.+...++|+++|+|+.++..+.++++.. +||.+++.|+...... ....+||+|++|+||.
T Consensus 267 gaG~G~~t~~la~~~~~~~~v~a~D~s~~~l~~~~~~~~~~g~~~v~~~~~D~~~~~~~-~~~~~fD~Vl~D~Pcsg~g~ 345 (450)
T 2yxl_A 267 AAAPGGKTTHLAELMKNKGKIYAFDVDKMRMKRLKDFVKRMGIKIVKPLVKDARKAPEI-IGEEVADKVLLDAPCTSSGT 345 (450)
T ss_dssp SCTTCHHHHHHHHHTTTCSEEEEECSCHHHHHHHHHHHHHTTCCSEEEECSCTTCCSSS-SCSSCEEEEEEECCCCCGGG
T ss_pred CCCccHHHHHHHHHcCCCCEEEEEcCCHHHHHHHHHHHHHcCCCcEEEEEcChhhcchh-hccCCCCEEEEcCCCCCCee
Confidence 99999999999998865589999999998777777766654 5899999999876431 1226899999999852
Q ss_pred -----h----------------HHHHHHHHHhccCCCCcEEEEEEcccccCCCCchhhhHHHHHHHHHHC-CCcEeE
Q 021911 225 -----D----------------QARILALNASYFLKAGGHFVISIKANCIDSTVPAEAVFQSEVKKLQQD-QFKPFE 279 (305)
Q Consensus 225 -----~----------------~~~~l~~~a~~~LkpGG~lv~s~~~~~i~~~~~~~~v~~~~~~~l~~~-Gf~~~e 279 (305)
+ |.+++. ++.++|||||+|+|+| |++...+++..+ ...|+++ +|+++.
T Consensus 346 ~~~~pd~~~~~~~~~~~~l~~~q~~iL~-~a~~~LkpGG~lvy~t--cs~~~~ene~~v----~~~l~~~~~~~~~~ 415 (450)
T 2yxl_A 346 IGKNPELRWRLREDKINEMSQLQRELLE-SAARLVKPGGRLLYTT--CSIFKEENEKNI----RWFLNVHPEFKLVP 415 (450)
T ss_dssp TTTSTTHHHHCCTTSHHHHHHHHHHHHH-HHHTTEEEEEEEEEEE--SCCCGGGTHHHH----HHHHHHCSSCEECC
T ss_pred eccChhhhhhCCHHHHHHHHHHHHHHHH-HHHHhcCCCcEEEEEe--CCCChhhHHHHH----HHHHHhCCCCEEee
Confidence 1 466777 9999999999999999 666666555443 1223343 677654
|
| >4fzv_A Putative methyltransferase NSUN4; mterf fold, methyltransferase fold, rRNA methyltransferase, mitochondria, transferase; HET: MSE SAM; 2.00A {Homo sapiens} PDB: 4fp9_A* | Back alignment and structure |
|---|
Probab=99.78 E-value=6.7e-19 Score=164.09 Aligned_cols=126 Identities=24% Similarity=0.163 Sum_probs=107.5
Q ss_pred hhHHHHHHHccccccCCCCCCEEEEEecCCCccHHHHHhhhCCCcEEEEEeCChHHHHHHHHHHHcC--------CCeEE
Q 021911 125 RSKLAAAVLGGVDNIWIKPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKR--------TNVIP 196 (305)
Q Consensus 125 ~s~l~a~ll~~l~~~~~~~g~~VLDlG~G~G~~t~~la~~~~~~~~V~avD~s~~~~~~l~~~a~~~--------~nI~~ 196 (305)
.|++++.+| .++|+++|||+|||+|++|+|||+.. ..+.|+|+|+|+.++..+.++++.. .+|.+
T Consensus 136 aS~l~~~~L------~~~pg~~VLD~CAaPGGKT~~la~~~-~~~~l~A~D~~~~R~~~l~~~l~r~~~~~~~~~~~v~v 208 (359)
T 4fzv_A 136 ASLLPVLAL------GLQPGDIVLDLCAAPGGKTLALLQTG-CCRNLAANDLSPSRIARLQKILHSYVPEEIRDGNQVRV 208 (359)
T ss_dssp GGHHHHHHH------CCCTTEEEEESSCTTCHHHHHHHHTT-CEEEEEEECSCHHHHHHHHHHHHHHSCTTTTTSSSEEE
T ss_pred HHHHHHHHh------CCCCCCEEEEecCCccHHHHHHHHhc-CCCcEEEEcCCHHHHHHHHHHHHHhhhhhhccCCceEE
Confidence 899999998 79999999999999999999999975 5678999999998888777776532 47889
Q ss_pred EEccCCCCcccccCCCcEeEEEEeCCCh---------------------------hHHHHHHHHHhccCCCCcEEEEEEc
Q 021911 197 IIEDARHPAKYRMLVGMVDVIFSDVAQP---------------------------DQARILALNASYFLKAGGHFVISIK 249 (305)
Q Consensus 197 ~~~D~~~~~~~~~~~~~fD~V~~d~~~~---------------------------~~~~~l~~~a~~~LkpGG~lv~s~~ 249 (305)
...|++.+... ....||.|++|+||. .|.++|. ++.++|||||+|+|||
T Consensus 209 ~~~D~~~~~~~--~~~~fD~VLlDaPCSg~g~g~~r~~~~~~~~~~~~~~~~l~~lQ~~iL~-~a~~~lkpGG~LVYsT- 284 (359)
T 4fzv_A 209 TSWDGRKWGEL--EGDTYDRVLVDVPCTTDRHSLHEEENNIFKRSRKKERQILPVLQVQLLA-AGLLATKPGGHVVYST- 284 (359)
T ss_dssp ECCCGGGHHHH--STTCEEEEEEECCCCCHHHHTTCCTTCTTSGGGHHHHHTHHHHHHHHHH-HHHHTEEEEEEEEEEE-
T ss_pred EeCchhhcchh--ccccCCEEEECCccCCCCCcccccChhhhhhCCHHHHHHHHHHHHHHHH-HHHhcCCCCcEEEEEe-
Confidence 99998876543 356899999999952 3778887 9999999999999999
Q ss_pred ccccCCCCchhhh
Q 021911 250 ANCIDSTVPAEAV 262 (305)
Q Consensus 250 ~~~i~~~~~~~~v 262 (305)
|++...+|+.+|
T Consensus 285 -CSl~~~ENE~vV 296 (359)
T 4fzv_A 285 -CSLSHLQNEYVV 296 (359)
T ss_dssp -SCCCTTTTHHHH
T ss_pred -CCCchhhCHHHH
Confidence 888888888775
|
| >1sqg_A SUN protein, FMU protein; rossmann-fold, mixed beta sheet, methyltransferase-fold, RNA-binding domain; 1.65A {Escherichia coli} SCOP: a.79.1.3 c.66.1.38 PDB: 1sqf_A | Back alignment and structure |
|---|
Probab=99.77 E-value=1.1e-17 Score=159.83 Aligned_cols=197 Identities=18% Similarity=0.154 Sum_probs=138.7
Q ss_pred ccCceEEEeC--Ccceee-e-ccccCCccccCcceeEeecCCCceeeeeecCchhhHHHHHHHccccccCCCCCCEEEEE
Q 021911 75 RHEGVFIAKG--KEDALV-T-KNLVAGEAVYNEKRISVQNEDGTKVEYRIWNPFRSKLAAAVLGGVDNIWIKPGARVLYL 150 (305)
Q Consensus 75 ~~~gv~~~~~--~~~~l~-t-~~~~~~~~~y~e~~~~~~d~~~~~~~~~~~~~~~s~l~a~ll~~l~~~~~~~g~~VLDl 150 (305)
...|+-..+. .++.+. . ...+...+.|.++.+.+||. .+++++.++ .++++.+|||+
T Consensus 193 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~qd~-------------~s~~~~~~l------~~~~g~~VLDl 253 (429)
T 1sqg_A 193 DEAGMKGFPHADYPDAVRLETPAPVHALPGFEDGWVTVQDA-------------SAQGCMTWL------APQNGEHILDL 253 (429)
T ss_dssp HHTTCCEECCTTCTTEEEESSCCCGGGSTTGGGTSEEECCH-------------HHHTHHHHH------CCCTTCEEEEE
T ss_pred HhCCCceeecCCCCCEEEECCCCCcccChHHhCCCeEeeCH-------------HHHHHHHHc------CCCCcCeEEEE
Confidence 3455544433 234442 2 12345668899999999998 888888887 57889999999
Q ss_pred ecCCCccHHHHHhhhCCCcEEEEEeCChHHHHHHHHHHHcC-CCeEEEEccCCCCcccccCCCcEeEEEEeCCCh-----
Q 021911 151 GAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKR-TNVIPIIEDARHPAKYRMLVGMVDVIFSDVAQP----- 224 (305)
Q Consensus 151 G~G~G~~t~~la~~~~~~~~V~avD~s~~~~~~l~~~a~~~-~nI~~~~~D~~~~~~~~~~~~~fD~V~~d~~~~----- 224 (305)
|||+|.++.++++.+. .++|+++|+|+.++..+.++++.. .++.+++.|+...... ....+||+|++|+||.
T Consensus 254 gaG~G~~t~~la~~~~-~~~v~a~D~~~~~l~~~~~~~~~~g~~~~~~~~D~~~~~~~-~~~~~fD~Vl~D~Pcsg~g~~ 331 (429)
T 1sqg_A 254 CAAPGGKTTHILEVAP-EAQVVAVDIDEQRLSRVYDNLKRLGMKATVKQGDGRYPSQW-CGEQQFDRILLDAPCSATGVI 331 (429)
T ss_dssp SCTTCHHHHHHHHHCT-TCEEEEEESSTTTHHHHHHHHHHTTCCCEEEECCTTCTHHH-HTTCCEEEEEEECCCCCGGGT
T ss_pred CCCchHHHHHHHHHcC-CCEEEEECCCHHHHHHHHHHHHHcCCCeEEEeCchhhchhh-cccCCCCEEEEeCCCCccccc
Confidence 9999999999999863 479999999998877777776654 3688999999877532 1236899999999852
Q ss_pred --------------------hHHHHHHHHHhccCCCCcEEEEEEcccccCCCCchhhhHHHHHHHHHH-CCCcEeE----
Q 021911 225 --------------------DQARILALNASYFLKAGGHFVISIKANCIDSTVPAEAVFQSEVKKLQQ-DQFKPFE---- 279 (305)
Q Consensus 225 --------------------~~~~~l~~~a~~~LkpGG~lv~s~~~~~i~~~~~~~~v~~~~~~~l~~-~Gf~~~e---- 279 (305)
.|.+++. ++.++|||||+|+|+| |++...+++..+ . ..+++ .+|+++.
T Consensus 332 ~~~p~~~~~~~~~~~~~l~~~q~~~L~-~a~~~LkpGG~lvyst--cs~~~~ene~~v-~---~~l~~~~~~~~~~~~~~ 404 (429)
T 1sqg_A 332 RRHPDIKWLRRDRDIPELAQLQSEILD-AIWPHLKTGGTLVYAT--CSVLPEENSLQI-K---AFLQRTADAELCETGTP 404 (429)
T ss_dssp TTCTTHHHHCCTTHHHHHHHHHHHHHH-HHGGGEEEEEEEEEEE--SCCCGGGTHHHH-H---HHHHHCTTCEECSSBCS
T ss_pred CCCcchhhcCCHHHHHHHHHHHHHHHH-HHHHhcCCCCEEEEEE--CCCChhhHHHHH-H---HHHHhCCCCEEeCCCCC
Confidence 2457777 9999999999999999 666666665443 1 22333 3566644
Q ss_pred ---EeecCCCC-CceEEEEEEEcC
Q 021911 280 ---QVTLEPFE-RDHACVVGGYRM 299 (305)
Q Consensus 280 ---~~~l~p~~-~~~~~vv~~~~~ 299 (305)
.+.+.|.. ....+++++.++
T Consensus 405 ~~~~~~~~P~~~~~dGff~a~l~k 428 (429)
T 1sqg_A 405 EQPGKQNLPGAEEGDGFFYAKLIK 428 (429)
T ss_dssp SSBSEEECCCTTSCCSEEEEEEEC
T ss_pred CCCeEEECCCCCCCCceEEEEEEE
Confidence 12344543 223445665544
|
| >3dh0_A SAM dependent methyltransferase; cystal structure, PSI-2, NYSGXRC, structural genomics, protein structure initiative; HET: SAM; 2.72A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=99.69 E-value=1.4e-15 Score=131.21 Aligned_cols=154 Identities=18% Similarity=0.127 Sum_probs=112.5
Q ss_pred CCCCCCEEEEEecCCCccHHHHHhhhCCCcEEEEEeCChHHHHHHHHHHHcC--CCeEEEEccCCCCcccccCCCcEeEE
Q 021911 140 WIKPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKR--TNVIPIIEDARHPAKYRMLVGMVDVI 217 (305)
Q Consensus 140 ~~~~g~~VLDlG~G~G~~t~~la~~~~~~~~V~avD~s~~~~~~l~~~a~~~--~nI~~~~~D~~~~~~~~~~~~~fD~V 217 (305)
.+.++.+|||+|||+|.++..+++...+..+|+++|+|+.++..+.+.+... +++.+++.|+.+.+. ...+||+|
T Consensus 34 ~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~~---~~~~fD~v 110 (219)
T 3dh0_A 34 GLKEGMTVLDVGTGAGFYLPYLSKMVGEKGKVYAIDVQEEMVNYAWEKVNKLGLKNVEVLKSEENKIPL---PDNTVDFI 110 (219)
T ss_dssp TCCTTCEEEESSCTTCTTHHHHHHHHTTTCEEEEEESCHHHHHHHHHHHHHHTCTTEEEEECBTTBCSS---CSSCEEEE
T ss_pred CCCCCCEEEEEecCCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHcCCCcEEEEecccccCCC---CCCCeeEE
Confidence 5678899999999999999999999766779999999996665555554432 579999999977542 35689999
Q ss_pred EEeCC---ChhHHHHHHHHHhccCCCCcEEEEEEcccccCCCC-chh-hh-HHHHHHHHHHCCCcEeEEeecCCCCCceE
Q 021911 218 FSDVA---QPDQARILALNASYFLKAGGHFVISIKANCIDSTV-PAE-AV-FQSEVKKLQQDQFKPFEQVTLEPFERDHA 291 (305)
Q Consensus 218 ~~d~~---~~~~~~~l~~~a~~~LkpGG~lv~s~~~~~i~~~~-~~~-~v-~~~~~~~l~~~Gf~~~e~~~l~p~~~~~~ 291 (305)
+++.. .++...++. ++.++|||||+|++++......... ... .. ..+..+.++++||++++...+.+. ++
T Consensus 111 ~~~~~l~~~~~~~~~l~-~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~~~~~~~~---~~ 186 (219)
T 3dh0_A 111 FMAFTFHELSEPLKFLE-ELKRVAKPFAYLAIIDWKKEERDKGPPPEEVYSEWEVGLILEDAGIRVGRVVEVGKY---CF 186 (219)
T ss_dssp EEESCGGGCSSHHHHHH-HHHHHEEEEEEEEEEEECSSCCSSSCCGGGSCCHHHHHHHHHHTTCEEEEEEEETTT---EE
T ss_pred EeehhhhhcCCHHHHHH-HHHHHhCCCeEEEEEEecccccccCCchhcccCHHHHHHHHHHCCCEEEEEEeeCCc---eE
Confidence 99766 456677777 9999999999999987322211111 111 11 122346668999999998877664 78
Q ss_pred EEEEEEcCC
Q 021911 292 CVVGGYRMP 300 (305)
Q Consensus 292 ~vv~~~~~~ 300 (305)
+++++++..
T Consensus 187 ~~~~~k~~~ 195 (219)
T 3dh0_A 187 GVYAMIVKQ 195 (219)
T ss_dssp EEEEECC--
T ss_pred EEEEEeccc
Confidence 888887654
|
| >4gek_A TRNA (CMO5U34)-methyltransferase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, rossmann fold; HET: GEK; 1.50A {Escherichia coli} PDB: 1im8_A* | Back alignment and structure |
|---|
Probab=99.69 E-value=5e-16 Score=138.97 Aligned_cols=104 Identities=22% Similarity=0.270 Sum_probs=82.4
Q ss_pred CCCCCCEEEEEecCCCccHHHHHhhhC-CCcEEEEEeCChHHHHHHHHHHHcC---CCeEEEEccCCCCcccccCCCcEe
Q 021911 140 WIKPGARVLYLGAASGTTVSHVSDIVG-PNGVVYAVEFSHRSGRDLVNMAKKR---TNVIPIIEDARHPAKYRMLVGMVD 215 (305)
Q Consensus 140 ~~~~g~~VLDlG~G~G~~t~~la~~~~-~~~~V~avD~s~~~~~~l~~~a~~~---~nI~~~~~D~~~~~~~~~~~~~fD 215 (305)
.++|+.+|||||||+|..+..|++.+. +..+|++||+|+.+++.+.+.++.. .+|++++.|+.+.+ .+.||
T Consensus 67 ~~~~~~~vLDlGcGtG~~~~~la~~~~~~~~~v~gvD~s~~ml~~A~~~~~~~~~~~~v~~~~~D~~~~~-----~~~~d 141 (261)
T 4gek_A 67 FVQPGTQVYDLGCSLGAATLSVRRNIHHDNCKIIAIDNSPAMIERCRRHIDAYKAPTPVDVIEGDIRDIA-----IENAS 141 (261)
T ss_dssp HCCTTCEEEEETCTTTHHHHHHHHTCCSSSCEEEEEESCHHHHHHHHHHHHTSCCSSCEEEEESCTTTCC-----CCSEE
T ss_pred hCCCCCEEEEEeCCCCHHHHHHHHhcCCCCCEEEEEECCHHHHHHHHHHHHhhccCceEEEeeccccccc-----ccccc
Confidence 578999999999999999999998864 4568999999995555554444432 58999999998764 35799
Q ss_pred EEEEeCC----C-hhHHHHHHHHHhccCCCCcEEEEEEc
Q 021911 216 VIFSDVA----Q-PDQARILALNASYFLKAGGHFVISIK 249 (305)
Q Consensus 216 ~V~~d~~----~-~~~~~~l~~~a~~~LkpGG~lv~s~~ 249 (305)
+|++... . ++...+|. +++++|||||.|+++.+
T Consensus 142 ~v~~~~~l~~~~~~~~~~~l~-~i~~~LkpGG~lii~e~ 179 (261)
T 4gek_A 142 MVVLNFTLQFLEPSERQALLD-KIYQGLNPGGALVLSEK 179 (261)
T ss_dssp EEEEESCGGGSCHHHHHHHHH-HHHHHEEEEEEEEEEEE
T ss_pred cceeeeeeeecCchhHhHHHH-HHHHHcCCCcEEEEEec
Confidence 9999765 2 23445666 99999999999999874
|
| >3eey_A Putative rRNA methylase; rRNA methylation, S-adenosyl-methionine, structural genomics structure initiative, PSI; HET: SAM; 2.20A {Clostridium thermocellum atcc 27405} | Back alignment and structure |
|---|
Probab=99.67 E-value=5.7e-16 Score=131.69 Aligned_cols=159 Identities=16% Similarity=0.196 Sum_probs=111.0
Q ss_pred CCCCCCEEEEEecCCCccHHHHHhhhCCCcEEEEEeCChHHHHHHHHHHHcC---CCeEEEEccCCCCcccccCCCcEeE
Q 021911 140 WIKPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKR---TNVIPIIEDARHPAKYRMLVGMVDV 216 (305)
Q Consensus 140 ~~~~g~~VLDlG~G~G~~t~~la~~~~~~~~V~avD~s~~~~~~l~~~a~~~---~nI~~~~~D~~~~~~~~~~~~~fD~ 216 (305)
.++++.+|||+|||+|.++..+++.+++.++|+++|+|+.+++.+.+.++.. +++.+++.|+.+.... ...+||+
T Consensus 19 ~~~~~~~vLDlGcG~G~~~~~l~~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~--~~~~fD~ 96 (197)
T 3eey_A 19 FVKEGDTVVDATCGNGNDTAFLASLVGENGRVFGFDIQDKAIANTTKKLTDLNLIDRVTLIKDGHQNMDKY--IDCPVKA 96 (197)
T ss_dssp HCCTTCEEEESCCTTSHHHHHHHHHHCTTCEEEEECSCHHHHHHHHHHHHHTTCGGGEEEECSCGGGGGGT--CCSCEEE
T ss_pred cCCCCCEEEEcCCCCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCCCeEEEECCHHHHhhh--ccCCceE
Confidence 4678899999999999999999999877779999999997766666665553 5799999998776532 3478999
Q ss_pred EEEeCCC-h-----------hHHHHHHHHHhccCCCCcEEEEEEcccccCCCCchhhhHHHHHHHHHHCCCcEeEEeecC
Q 021911 217 IFSDVAQ-P-----------DQARILALNASYFLKAGGHFVISIKANCIDSTVPAEAVFQSEVKKLQQDQFKPFEQVTLE 284 (305)
Q Consensus 217 V~~d~~~-~-----------~~~~~l~~~a~~~LkpGG~lv~s~~~~~i~~~~~~~~v~~~~~~~l~~~Gf~~~e~~~l~ 284 (305)
|+++++. + +..+++. ++.++|||||+|++++...+... ......+......+...+|++.....++
T Consensus 97 v~~~~~~~~~~~~~~~~~~~~~~~~l~-~~~~~Lk~gG~l~~~~~~~~~~~-~~~~~~~~~~~~~l~~~~~~v~~~~~~~ 174 (197)
T 3eey_A 97 VMFNLGYLPSGDHSISTRPETTIQALS-KAMELLVTGGIITVVIYYGGDTG-FEEKEKVLEFLKGVDQKKFIVQRTDFIN 174 (197)
T ss_dssp EEEEESBCTTSCTTCBCCHHHHHHHHH-HHHHHEEEEEEEEEEECCBTTTB-SHHHHHHHHHHTTSCTTTEEEEEEEETT
T ss_pred EEEcCCcccCcccccccCcccHHHHHH-HHHHhCcCCCEEEEEEccCCCCc-HHHHHHHHHHHHhCCCCcEEEEEEEecc
Confidence 9998853 1 3445666 99999999999999874322111 1112222233334455678887766555
Q ss_pred CCCCceEEEEEEEcCCCC
Q 021911 285 PFERDHACVVGGYRMPKK 302 (305)
Q Consensus 285 p~~~~~~~vv~~~~~~~~ 302 (305)
.....-++++..++.-..
T Consensus 175 ~~~~pp~~~~~~~~~~~~ 192 (197)
T 3eey_A 175 QANCPPILVCIEKISEGH 192 (197)
T ss_dssp CCSCCCEEEEEEECCSSC
T ss_pred CccCCCeEEEEEEccccc
Confidence 444444556665555443
|
| >1nkv_A Hypothetical protein YJHP; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.90A {Escherichia coli} SCOP: c.66.1.21 | Back alignment and structure |
|---|
Probab=99.65 E-value=2.7e-15 Score=132.45 Aligned_cols=155 Identities=21% Similarity=0.126 Sum_probs=110.5
Q ss_pred eeecCchhhHHHHHHHccccccCCCCCCEEEEEecCCCccHHHHHhhhCCCcEEEEEeCChHHHHHHHHHHHcC---CCe
Q 021911 118 YRIWNPFRSKLAAAVLGGVDNIWIKPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKR---TNV 194 (305)
Q Consensus 118 ~~~~~~~~s~l~a~ll~~l~~~~~~~g~~VLDlG~G~G~~t~~la~~~~~~~~V~avD~s~~~~~~l~~~a~~~---~nI 194 (305)
++.++|........++..+ .+.++.+|||+|||+|.++..+++.+ ..+|+++|+|+.+++.+.+.++.. ++|
T Consensus 14 ~~~~~~~~~~~~~~l~~~~---~~~~~~~VLDiGcG~G~~~~~la~~~--~~~v~gvD~s~~~l~~a~~~~~~~~~~~~v 88 (256)
T 1nkv_A 14 HRIHNPFTEEKYATLGRVL---RMKPGTRILDLGSGSGEMLCTWARDH--GITGTGIDMSSLFTAQAKRRAEELGVSERV 88 (256)
T ss_dssp CSSSSSCCHHHHHHHHHHT---CCCTTCEEEEETCTTCHHHHHHHHHT--CCEEEEEESCHHHHHHHHHHHHHTTCTTTE
T ss_pred ccccCCCCHHHHHHHHHhc---CCCCCCEEEEECCCCCHHHHHHHHhc--CCeEEEEeCCHHHHHHHHHHHHhcCCCcce
Confidence 4455666666666665433 57789999999999999999999986 358999999997766666655543 489
Q ss_pred EEEEccCCCCcccccCCCcEeEEEEeCC---ChhHHHHHHHHHhccCCCCcEEEEEEcccccCCCCch-----------h
Q 021911 195 IPIIEDARHPAKYRMLVGMVDVIFSDVA---QPDQARILALNASYFLKAGGHFVISIKANCIDSTVPA-----------E 260 (305)
Q Consensus 195 ~~~~~D~~~~~~~~~~~~~fD~V~~d~~---~~~~~~~l~~~a~~~LkpGG~lv~s~~~~~i~~~~~~-----------~ 260 (305)
.+++.|+.+.+. .++||+|++... .++...++. ++.++|||||+|++++........... .
T Consensus 89 ~~~~~d~~~~~~----~~~fD~V~~~~~~~~~~~~~~~l~-~~~r~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 163 (256)
T 1nkv_A 89 HFIHNDAAGYVA----NEKCDVAACVGATWIAGGFAGAEE-LLAQSLKPGGIMLIGEPYWRQLPATEEIAQACGVSSTSD 163 (256)
T ss_dssp EEEESCCTTCCC----SSCEEEEEEESCGGGTSSSHHHHH-HHTTSEEEEEEEEEEEEEETTCCSSHHHHHTTTCSCGGG
T ss_pred EEEECChHhCCc----CCCCCEEEECCChHhcCCHHHHHH-HHHHHcCCCeEEEEecCcccCCCChHHHHHHHhcccccc
Confidence 999999987642 478999998655 346677777 999999999999998732111110000 0
Q ss_pred h-hHHHHHHHHHHCCCcEeEEee
Q 021911 261 A-VFQSEVKKLQQDQFKPFEQVT 282 (305)
Q Consensus 261 ~-v~~~~~~~l~~~Gf~~~e~~~ 282 (305)
. ......+.|+++||++++...
T Consensus 164 ~~~~~~~~~~l~~aGf~~~~~~~ 186 (256)
T 1nkv_A 164 FLTLPGLVGAFDDLGYDVVEMVL 186 (256)
T ss_dssp SCCHHHHHHHHHTTTBCCCEEEE
T ss_pred cCCHHHHHHHHHHCCCeeEEEEe
Confidence 0 112335667889999887643
|
| >3kkz_A Uncharacterized protein Q5LES9; putative methyltransferase, BFR250, NESG, structural genomics, PSI-2; HET: SAM; 1.68A {Bacteroides fragilis nctc 9343} PDB: 3e7p_A 3t7s_A* 3t7r_A* 3t7t_A* | Back alignment and structure |
|---|
Probab=99.65 E-value=4.5e-15 Score=132.22 Aligned_cols=156 Identities=17% Similarity=0.185 Sum_probs=112.2
Q ss_pred cCchhhHHHHHHHccccccCCCCCCEEEEEecCCCccHHHHHhhhCCCcEEEEEeCChHHHHHHHHHHHcC---CCeEEE
Q 021911 121 WNPFRSKLAAAVLGGVDNIWIKPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKR---TNVIPI 197 (305)
Q Consensus 121 ~~~~~s~l~a~ll~~l~~~~~~~g~~VLDlG~G~G~~t~~la~~~~~~~~V~avD~s~~~~~~l~~~a~~~---~nI~~~ 197 (305)
+.|........++..+. .+.++.+|||+|||+|.++..+++. +..+|++||+|+..+..+.+.++.. ++|.++
T Consensus 26 ~~~~~~~~~~~~l~~l~--~~~~~~~vLDiGcG~G~~~~~la~~--~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~ 101 (267)
T 3kkz_A 26 QGPGSPEVTLKALSFID--NLTEKSLIADIGCGTGGQTMVLAGH--VTGQVTGLDFLSGFIDIFNRNARQSGLQNRVTGI 101 (267)
T ss_dssp SSSCCHHHHHHHHTTCC--CCCTTCEEEEETCTTCHHHHHHHTT--CSSEEEEEESCHHHHHHHHHHHHHTTCTTTEEEE
T ss_pred cCCCCHHHHHHHHHhcc--cCCCCCEEEEeCCCCCHHHHHHHhc--cCCEEEEEeCCHHHHHHHHHHHHHcCCCcCcEEE
Confidence 44555566666766554 4678899999999999999999998 5679999999997666666655544 569999
Q ss_pred EccCCCCcccccCCCcEeEEEEeCC--ChhHHHHHHHHHhccCCCCcEEEEEEcccccCCCCchhh-h----------HH
Q 021911 198 IEDARHPAKYRMLVGMVDVIFSDVA--QPDQARILALNASYFLKAGGHFVISIKANCIDSTVPAEA-V----------FQ 264 (305)
Q Consensus 198 ~~D~~~~~~~~~~~~~fD~V~~d~~--~~~~~~~l~~~a~~~LkpGG~lv~s~~~~~i~~~~~~~~-v----------~~ 264 (305)
+.|+.+.+. ..++||+|++..+ ..+...++. ++.++|||||+|++++............. . ..
T Consensus 102 ~~d~~~~~~---~~~~fD~i~~~~~~~~~~~~~~l~-~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 177 (267)
T 3kkz_A 102 VGSMDDLPF---RNEELDLIWSEGAIYNIGFERGLN-EWRKYLKKGGYLAVSECSWFTDERPAEINDFWMDAYPEIDTIP 177 (267)
T ss_dssp ECCTTSCCC---CTTCEEEEEESSCGGGTCHHHHHH-HHGGGEEEEEEEEEEEEEESSSCCCHHHHHHHHHHCTTCEEHH
T ss_pred EcChhhCCC---CCCCEEEEEEcCCceecCHHHHHH-HHHHHcCCCCEEEEEEeeecCCCChHHHHHHHHHhCCCCCCHH
Confidence 999977642 2579999999766 235667776 99999999999999874211111111111 1 12
Q ss_pred HHHHHHHHCCCcEeEEeecC
Q 021911 265 SEVKKLQQDQFKPFEQVTLE 284 (305)
Q Consensus 265 ~~~~~l~~~Gf~~~e~~~l~ 284 (305)
...+.|+++||++++...+.
T Consensus 178 ~~~~~l~~aGf~~v~~~~~~ 197 (267)
T 3kkz_A 178 NQVAKIHKAGYLPVATFILP 197 (267)
T ss_dssp HHHHHHHHTTEEEEEEEECC
T ss_pred HHHHHHHHCCCEEEEEEECC
Confidence 23466789999999887654
|
| >3mti_A RRNA methylase; SAM-dependent, PSI, MCSG, structural genomics, midwest cente structural genomics, protein structure initiative; 1.95A {Streptococcus thermophilus} PDB: 3lby_A* | Back alignment and structure |
|---|
Probab=99.64 E-value=1.8e-15 Score=127.28 Aligned_cols=138 Identities=13% Similarity=0.133 Sum_probs=94.5
Q ss_pred CCCCCCEEEEEecCCCccHHHHHhhhCCCcEEEEEeCChHHHHHHHHHHHcC--CCeEEEEccCCCCcccccCCCcEeEE
Q 021911 140 WIKPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKR--TNVIPIIEDARHPAKYRMLVGMVDVI 217 (305)
Q Consensus 140 ~~~~g~~VLDlG~G~G~~t~~la~~~~~~~~V~avD~s~~~~~~l~~~a~~~--~nI~~~~~D~~~~~~~~~~~~~fD~V 217 (305)
.++++.+|||+|||+|.++..+++. ..+|+++|+|+.+++.+.+.++.. +++++++.|+...... ...+||+|
T Consensus 19 ~~~~~~~vLDiGcG~G~~~~~la~~---~~~v~~vD~s~~~l~~a~~~~~~~~~~~v~~~~~~~~~l~~~--~~~~fD~v 93 (185)
T 3mti_A 19 VLDDESIVVDATMGNGNDTAFLAGL---SKKVYAFDVQEQALGKTSQRLSDLGIENTELILDGHENLDHY--VREPIRAA 93 (185)
T ss_dssp TCCTTCEEEESCCTTSHHHHHHHTT---SSEEEEEESCHHHHHHHHHHHHHHTCCCEEEEESCGGGGGGT--CCSCEEEE
T ss_pred hCCCCCEEEEEcCCCCHHHHHHHHh---CCEEEEEECCHHHHHHHHHHHHHcCCCcEEEEeCcHHHHHhh--ccCCcCEE
Confidence 4678899999999999999999987 469999999996666655555433 6899999777654332 25689999
Q ss_pred EEeCC-----------C-hhHHHHHHHHHhccCCCCcEEEEEEcccccCCCCchhhhHHHHHHHHHHCCCcEeEEeecC
Q 021911 218 FSDVA-----------Q-PDQARILALNASYFLKAGGHFVISIKANCIDSTVPAEAVFQSEVKKLQQDQFKPFEQVTLE 284 (305)
Q Consensus 218 ~~d~~-----------~-~~~~~~l~~~a~~~LkpGG~lv~s~~~~~i~~~~~~~~v~~~~~~~l~~~Gf~~~e~~~l~ 284 (305)
+++++ . .++..++. ++.++|||||+|++++...+... ..+...+......+...+|.+.....+.
T Consensus 94 ~~~~~~~~~~~~~~~~~~~~~~~~l~-~~~~~LkpgG~l~i~~~~~~~~~-~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 170 (185)
T 3mti_A 94 IFNLGYLPSADKSVITKPHTTLEAIE-KILDRLEVGGRLAIMIYYGHDGG-DMEKDAVLEYVIGLDQRVFTAMLYQPLN 170 (185)
T ss_dssp EEEEC-----------CHHHHHHHHH-HHHHHEEEEEEEEEEEC-------CHHHHHHHHHHHHSCTTTEEEEEEEESS
T ss_pred EEeCCCCCCcchhcccChhhHHHHHH-HHHHhcCCCcEEEEEEeCCCCCC-HHHHHHHHHHHHhCCCceEEEEEehhhc
Confidence 99853 1 23445555 89999999999999873222111 1122223333455555678877766554
|
| >2frn_A Hypothetical protein PH0793; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; 2.10A {Pyrococcus horikoshii OT3} PDB: 3k6r_A 3a25_A* 3a26_A* | Back alignment and structure |
|---|
Probab=99.64 E-value=4.8e-15 Score=133.66 Aligned_cols=146 Identities=14% Similarity=0.024 Sum_probs=104.7
Q ss_pred CCCCCEEEEEecCCCccHHHHHhhhCCCcEEEEEeCChHHHHHHHHHHHcC---CCeEEEEccCCCCcccccCCCcEeEE
Q 021911 141 IKPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKR---TNVIPIIEDARHPAKYRMLVGMVDVI 217 (305)
Q Consensus 141 ~~~g~~VLDlG~G~G~~t~~la~~~~~~~~V~avD~s~~~~~~l~~~a~~~---~nI~~~~~D~~~~~~~~~~~~~fD~V 217 (305)
++++.+|||+|||+|.++..+|... .. +|+++|+|+.+++.+.++++.+ .++++++.|+.+... ..+||+|
T Consensus 123 ~~~~~~VLDlgcG~G~~~~~la~~~-~~-~V~~vD~s~~~~~~a~~n~~~n~~~~~v~~~~~D~~~~~~----~~~fD~V 196 (278)
T 2frn_A 123 AKPDELVVDMFAGIGHLSLPIAVYG-KA-KVIAIEKDPYTFKFLVENIHLNKVEDRMSAYNMDNRDFPG----ENIADRI 196 (278)
T ss_dssp CCTTCEEEETTCTTTTTHHHHHHHT-CC-EEEEECCCHHHHHHHHHHHHHTTCTTTEEEECSCTTTCCC----CSCEEEE
T ss_pred CCCCCEEEEecccCCHHHHHHHHhC-CC-EEEEEECCHHHHHHHHHHHHHcCCCceEEEEECCHHHhcc----cCCccEE
Confidence 5678999999999999999999984 23 7999999997777777666654 348999999988753 4689999
Q ss_pred EEeCCChhHHHHHHHHHhccCCCCcEEEEEEcccccCCCCchhhhHHHHHHHHHHCCCcEeE-----EeecCCCCCceEE
Q 021911 218 FSDVAQPDQARILALNASYFLKAGGHFVISIKANCIDSTVPAEAVFQSEVKKLQQDQFKPFE-----QVTLEPFERDHAC 292 (305)
Q Consensus 218 ~~d~~~~~~~~~l~~~a~~~LkpGG~lv~s~~~~~i~~~~~~~~v~~~~~~~l~~~Gf~~~e-----~~~l~p~~~~~~~ 292 (305)
++|+|... .+++. ++.++|||||+|++.+ +. .........+....+.+++.||++.. ...+.|. .+|.+
T Consensus 197 i~~~p~~~-~~~l~-~~~~~LkpgG~l~~~~--~~-~~~~~~~~~~~~i~~~~~~~G~~~~~~~~~~v~~~~p~-~~h~~ 270 (278)
T 2frn_A 197 LMGYVVRT-HEFIP-KALSIAKDGAIIHYHN--TV-PEKLMPREPFETFKRITKEYGYDVEKLNELKIKRYAPG-VWHVV 270 (278)
T ss_dssp EECCCSSG-GGGHH-HHHHHEEEEEEEEEEE--EE-EGGGTTTTTHHHHHHHHHHTTCEEEEEEEEEEEEETTT-EEEEE
T ss_pred EECCchhH-HHHHH-HHHHHCCCCeEEEEEE--ee-ccccccccHHHHHHHHHHHcCCeeEEeeeEEEEecCCC-ceEEE
Confidence 99988433 45555 8889999999999987 22 11111122233335666888998766 3444443 46666
Q ss_pred EEEEEc
Q 021911 293 VVGGYR 298 (305)
Q Consensus 293 vv~~~~ 298 (305)
+-.+..
T Consensus 271 ~d~~v~ 276 (278)
T 2frn_A 271 LDLRVF 276 (278)
T ss_dssp EEEEEE
T ss_pred EEEEEe
Confidence 655544
|
| >3dtn_A Putative methyltransferase MM_2633; structural genomics, unknown function, PSI-2, protein structure initiative; 2.09A {Methanosarcina mazei} | Back alignment and structure |
|---|
Probab=99.64 E-value=1e-14 Score=127.02 Aligned_cols=116 Identities=16% Similarity=0.137 Sum_probs=87.6
Q ss_pred hhHHHHHHHccccccCCCCCCEEEEEecCCCccHHHHHhhhCCCcEEEEEeCChHHHHHHHHHHHcCCCeEEEEccCCCC
Q 021911 125 RSKLAAAVLGGVDNIWIKPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKRTNVIPIIEDARHP 204 (305)
Q Consensus 125 ~s~l~a~ll~~l~~~~~~~g~~VLDlG~G~G~~t~~la~~~~~~~~V~avD~s~~~~~~l~~~a~~~~nI~~~~~D~~~~ 204 (305)
...+...++..+. ...++.+|||+|||+|.++..+++.. +..+|+++|+|+.++..+.+.+....++.+++.|+.+.
T Consensus 28 ~~~~~~~~~~~~~--~~~~~~~vLDiG~G~G~~~~~l~~~~-~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~d~~~~ 104 (234)
T 3dtn_A 28 FDDFYGVSVSIAS--VDTENPDILDLGAGTGLLSAFLMEKY-PEATFTLVDMSEKMLEIAKNRFRGNLKVKYIEADYSKY 104 (234)
T ss_dssp HHHHHHHHHHTCC--CSCSSCEEEEETCTTSHHHHHHHHHC-TTCEEEEEESCHHHHHHHHHHTCSCTTEEEEESCTTTC
T ss_pred HHHHHHHHHHHhh--cCCCCCeEEEecCCCCHHHHHHHHhC-CCCeEEEEECCHHHHHHHHHhhccCCCEEEEeCchhcc
Confidence 3444455554443 35677999999999999999999986 56799999999955555444444445899999999876
Q ss_pred cccccCCCcEeEEEEeCC---Ch--hHHHHHHHHHhccCCCCcEEEEEE
Q 021911 205 AKYRMLVGMVDVIFSDVA---QP--DQARILALNASYFLKAGGHFVISI 248 (305)
Q Consensus 205 ~~~~~~~~~fD~V~~d~~---~~--~~~~~l~~~a~~~LkpGG~lv~s~ 248 (305)
+. ..+||+|++..+ .+ +..+++. ++.++|||||+|++++
T Consensus 105 ~~----~~~fD~v~~~~~l~~~~~~~~~~~l~-~~~~~LkpgG~l~~~~ 148 (234)
T 3dtn_A 105 DF----EEKYDMVVSALSIHHLEDEDKKELYK-RSYSILKESGIFINAD 148 (234)
T ss_dssp CC----CSCEEEEEEESCGGGSCHHHHHHHHH-HHHHHEEEEEEEEEEE
T ss_pred CC----CCCceEEEEeCccccCCHHHHHHHHH-HHHHhcCCCcEEEEEE
Confidence 52 279999999776 22 2234666 9999999999999987
|
| >3i9f_A Putative type 11 methyltransferase; structural genomics, PSI-2, protein structure initiative; 2.50A {Sulfolobus solfataricus} | Back alignment and structure |
|---|
Probab=99.63 E-value=3.2e-15 Score=123.96 Aligned_cols=145 Identities=13% Similarity=0.168 Sum_probs=105.7
Q ss_pred CCCCCCEEEEEecCCCccHHHHHhhhCCCcEEEEEeCChHHHHHHHHHHHc-CCCeEEEEccCCCCcccccCCCcEeEEE
Q 021911 140 WIKPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKK-RTNVIPIIEDARHPAKYRMLVGMVDVIF 218 (305)
Q Consensus 140 ~~~~g~~VLDlG~G~G~~t~~la~~~~~~~~V~avD~s~~~~~~l~~~a~~-~~nI~~~~~D~~~~~~~~~~~~~fD~V~ 218 (305)
.+.++.+|||+|||+|.++..+++.. .+|+++|+|+ .+++.+++ .+++.+++.| .+ ...++||+|+
T Consensus 14 ~~~~~~~vLDiG~G~G~~~~~l~~~~---~~v~~vD~s~----~~~~~a~~~~~~v~~~~~d---~~---~~~~~~D~v~ 80 (170)
T 3i9f_A 14 FEGKKGVIVDYGCGNGFYCKYLLEFA---TKLYCIDINV----IALKEVKEKFDSVITLSDP---KE---IPDNSVDFIL 80 (170)
T ss_dssp HSSCCEEEEEETCTTCTTHHHHHTTE---EEEEEECSCH----HHHHHHHHHCTTSEEESSG---GG---SCTTCEEEEE
T ss_pred CcCCCCeEEEECCCCCHHHHHHHhhc---CeEEEEeCCH----HHHHHHHHhCCCcEEEeCC---CC---CCCCceEEEE
Confidence 46788999999999999999999985 3899999999 44545444 3789999999 11 2357899999
Q ss_pred EeCC---ChhHHHHHHHHHhccCCCCcEEEEEEcccccCCCCch-h-hhHHHHHHHHHHCCCcEeEEeecCCCCCceEEE
Q 021911 219 SDVA---QPDQARILALNASYFLKAGGHFVISIKANCIDSTVPA-E-AVFQSEVKKLQQDQFKPFEQVTLEPFERDHACV 293 (305)
Q Consensus 219 ~d~~---~~~~~~~l~~~a~~~LkpGG~lv~s~~~~~i~~~~~~-~-~v~~~~~~~l~~~Gf~~~e~~~l~p~~~~~~~v 293 (305)
+... .++...++. ++.++|||||+|++++..........+ . ..-.+++..+-+ ||++++...+.++ ++.+
T Consensus 81 ~~~~l~~~~~~~~~l~-~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-Gf~~~~~~~~~~~---~~~l 155 (170)
T 3i9f_A 81 FANSFHDMDDKQHVIS-EVKRILKDDGRVIIIDWRKENTGIGPPLSIRMDEKDYMGWFS-NFVVEKRFNPTPY---HFGL 155 (170)
T ss_dssp EESCSTTCSCHHHHHH-HHHHHEEEEEEEEEEEECSSCCSSSSCGGGCCCHHHHHHHTT-TEEEEEEECSSTT---EEEE
T ss_pred EccchhcccCHHHHHH-HHHHhcCCCCEEEEEEcCccccccCchHhhhcCHHHHHHHHh-CcEEEEccCCCCc---eEEE
Confidence 9766 346677777 999999999999998743221111111 1 122334444444 9999998888777 8888
Q ss_pred EEEEcCCCC
Q 021911 294 VGGYRMPKK 302 (305)
Q Consensus 294 v~~~~~~~~ 302 (305)
++.+..++-
T Consensus 156 ~~~~~~~~~ 164 (170)
T 3i9f_A 156 VLKRKTSEG 164 (170)
T ss_dssp EEEECCCCS
T ss_pred EEecCCCCc
Confidence 888887754
|
| >3lpm_A Putative methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium, nysgxrc; 2.40A {Listeria monocytogenes} | Back alignment and structure |
|---|
Probab=99.63 E-value=1e-14 Score=129.77 Aligned_cols=145 Identities=12% Similarity=0.126 Sum_probs=104.6
Q ss_pred CCC-CCCEEEEEecCCCccHHHHHhhhCCCcEEEEEeCChHHHHHHHHHHHcC---CCeEEEEccCCCCcccccCCCcEe
Q 021911 140 WIK-PGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKR---TNVIPIIEDARHPAKYRMLVGMVD 215 (305)
Q Consensus 140 ~~~-~g~~VLDlG~G~G~~t~~la~~~~~~~~V~avD~s~~~~~~l~~~a~~~---~nI~~~~~D~~~~~~~~~~~~~fD 215 (305)
.++ ++.+|||+|||+|.++..++... ..+|++||+++.+++.+.++++.. .++.+++.|+.+.... ....+||
T Consensus 45 ~~~~~~~~vLDlG~G~G~~~~~la~~~--~~~v~gvDi~~~~~~~a~~n~~~~~~~~~v~~~~~D~~~~~~~-~~~~~fD 121 (259)
T 3lpm_A 45 YLPIRKGKIIDLCSGNGIIPLLLSTRT--KAKIVGVEIQERLADMAKRSVAYNQLEDQIEIIEYDLKKITDL-IPKERAD 121 (259)
T ss_dssp CCCSSCCEEEETTCTTTHHHHHHHTTC--CCEEEEECCSHHHHHHHHHHHHHTTCTTTEEEECSCGGGGGGT-SCTTCEE
T ss_pred cCCCCCCEEEEcCCchhHHHHHHHHhc--CCcEEEEECCHHHHHHHHHHHHHCCCcccEEEEECcHHHhhhh-hccCCcc
Confidence 466 78999999999999999999883 349999999997766666655544 3699999999876532 2257999
Q ss_pred EEEEeCCCh-----------------------hHHHHHHHHHhccCCCCcEEEEEEcccccCCCCchhhhHHHHHHHHHH
Q 021911 216 VIFSDVAQP-----------------------DQARILALNASYFLKAGGHFVISIKANCIDSTVPAEAVFQSEVKKLQQ 272 (305)
Q Consensus 216 ~V~~d~~~~-----------------------~~~~~l~~~a~~~LkpGG~lv~s~~~~~i~~~~~~~~v~~~~~~~l~~ 272 (305)
+|++|+|.. +...++. .+.++|||+|+|++.... ....+....+++
T Consensus 122 ~Ii~npPy~~~~~~~~~~~~~~~~~a~~~~~~~~~~~l~-~~~~~LkpgG~l~~~~~~----------~~~~~~~~~l~~ 190 (259)
T 3lpm_A 122 IVTCNPPYFATPDTSLKNTNEHFRIARHEVMCTLEDTIR-VAASLLKQGGKANFVHRP----------ERLLDIIDIMRK 190 (259)
T ss_dssp EEEECCCC-----------------------HHHHHHHH-HHHHHEEEEEEEEEEECT----------TTHHHHHHHHHH
T ss_pred EEEECCCCCCCccccCCCCchHHHhhhccccCCHHHHHH-HHHHHccCCcEEEEEEcH----------HHHHHHHHHHHH
Confidence 999998831 1234555 899999999999997621 112334566778
Q ss_pred CCCcEeEEeecCCCCC---ceEEEEEEEc
Q 021911 273 DQFKPFEQVTLEPFER---DHACVVGGYR 298 (305)
Q Consensus 273 ~Gf~~~e~~~l~p~~~---~~~~vv~~~~ 298 (305)
.+|.+..+..+.|... ...++.+++.
T Consensus 191 ~~~~~~~~~~v~~~~~~~~~~~l~~~~k~ 219 (259)
T 3lpm_A 191 YRLEPKRIQFVHPRSDREANTVLVEGIKD 219 (259)
T ss_dssp TTEEEEEEEEEESSTTSCCSEEEEEEEET
T ss_pred CCCceEEEEEeecCCCCCcEEEEEEEEeC
Confidence 8999988777666433 2344445543
|
| >2pwy_A TRNA (adenine-N(1)-)-methyltransferase; mtase, adoMet, TRMI, tRNA-M1A58; HET: SAH; 1.70A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.63 E-value=9.1e-15 Score=129.15 Aligned_cols=128 Identities=20% Similarity=0.196 Sum_probs=99.9
Q ss_pred CCCCCCEEEEEecCCCccHHHHHhhhCCCcEEEEEeCChHHHHHHHHHHHcC---CCeEEEEccCCCCcccccCCCcEeE
Q 021911 140 WIKPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKR---TNVIPIIEDARHPAKYRMLVGMVDV 216 (305)
Q Consensus 140 ~~~~g~~VLDlG~G~G~~t~~la~~~~~~~~V~avD~s~~~~~~l~~~a~~~---~nI~~~~~D~~~~~~~~~~~~~fD~ 216 (305)
.+.++.+|||+|||+|.++..+++.+++..+|+++|+|+.+++.+.+.++.. +++.+++.|+.+.+ ....+||+
T Consensus 93 ~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~g~~~v~~~~~d~~~~~---~~~~~~D~ 169 (258)
T 2pwy_A 93 DLAPGMRVLEAGTGSGGLTLFLARAVGEKGLVESYEARPHHLAQAERNVRAFWQVENVRFHLGKLEEAE---LEEAAYDG 169 (258)
T ss_dssp TCCTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHHCCCCCEEEEESCGGGCC---CCTTCEEE
T ss_pred CCCCCCEEEEECCCcCHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHhcCCCCEEEEECchhhcC---CCCCCcCE
Confidence 5788999999999999999999999877789999999997776666665443 68999999987652 12468999
Q ss_pred EEEeCCChhHHHHHHHHHhccCCCCcEEEEEEcccccCCCCchhhhHHHHHHHHHHCCCcEeEEee
Q 021911 217 IFSDVAQPDQARILALNASYFLKAGGHFVISIKANCIDSTVPAEAVFQSEVKKLQQDQFKPFEQVT 282 (305)
Q Consensus 217 V~~d~~~~~~~~~l~~~a~~~LkpGG~lv~s~~~~~i~~~~~~~~v~~~~~~~l~~~Gf~~~e~~~ 282 (305)
|+++++.+. .++. ++.++|||||+|++.++ + ...+.+.++.|++.||..++..+
T Consensus 170 v~~~~~~~~--~~l~-~~~~~L~~gG~l~~~~~--~-------~~~~~~~~~~l~~~gf~~~~~~~ 223 (258)
T 2pwy_A 170 VALDLMEPW--KVLE-KAALALKPDRFLVAYLP--N-------ITQVLELVRAAEAHPFRLERVLE 223 (258)
T ss_dssp EEEESSCGG--GGHH-HHHHHEEEEEEEEEEES--C-------HHHHHHHHHHHTTTTEEEEEEEE
T ss_pred EEECCcCHH--HHHH-HHHHhCCCCCEEEEEeC--C-------HHHHHHHHHHHHHCCCceEEEEE
Confidence 999987654 4566 88999999999999872 2 11234456777788998776554
|
| >3f4k_A Putative methyltransferase; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.30A {Bacteroides thetaiotaomicron} PDB: 3t0i_A* 3svz_A* 3sxj_A* | Back alignment and structure |
|---|
Probab=99.62 E-value=1.8e-14 Score=127.21 Aligned_cols=156 Identities=16% Similarity=0.180 Sum_probs=110.5
Q ss_pred cCchhhHHHHHHHccccccCCCCCCEEEEEecCCCccHHHHHhhhCCCcEEEEEeCChHHHHHHHHHHHcC---CCeEEE
Q 021911 121 WNPFRSKLAAAVLGGVDNIWIKPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKR---TNVIPI 197 (305)
Q Consensus 121 ~~~~~s~l~a~ll~~l~~~~~~~g~~VLDlG~G~G~~t~~la~~~~~~~~V~avD~s~~~~~~l~~~a~~~---~nI~~~ 197 (305)
+.|....+...++..+. .+.++.+|||+|||+|.++..+++... .+|+++|+|+..+..+.+.+... .++.++
T Consensus 26 ~~~~~~~~~~~~l~~l~--~~~~~~~vLDiG~G~G~~~~~l~~~~~--~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~ 101 (257)
T 3f4k_A 26 QGPGSPEATRKAVSFIN--ELTDDAKIADIGCGTGGQTLFLADYVK--GQITGIDLFPDFIEIFNENAVKANCADRVKGI 101 (257)
T ss_dssp SSSCCHHHHHHHHTTSC--CCCTTCEEEEETCTTSHHHHHHHHHCC--SEEEEEESCHHHHHHHHHHHHHTTCTTTEEEE
T ss_pred cCCCCHHHHHHHHHHHh--cCCCCCeEEEeCCCCCHHHHHHHHhCC--CeEEEEECCHHHHHHHHHHHHHcCCCCceEEE
Confidence 34555566777766554 467788999999999999999999853 49999999996666665555543 359999
Q ss_pred EccCCCCcccccCCCcEeEEEEeCC--ChhHHHHHHHHHhccCCCCcEEEEEEcccccCCCCchh-hh----------HH
Q 021911 198 IEDARHPAKYRMLVGMVDVIFSDVA--QPDQARILALNASYFLKAGGHFVISIKANCIDSTVPAE-AV----------FQ 264 (305)
Q Consensus 198 ~~D~~~~~~~~~~~~~fD~V~~d~~--~~~~~~~l~~~a~~~LkpGG~lv~s~~~~~i~~~~~~~-~v----------~~ 264 (305)
+.|+...+. ...+||+|+++.. +.+...++. ++.++|||||+|++++............ .. ..
T Consensus 102 ~~d~~~~~~---~~~~fD~v~~~~~l~~~~~~~~l~-~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 177 (257)
T 3f4k_A 102 TGSMDNLPF---QNEELDLIWSEGAIYNIGFERGMN-EWSKYLKKGGFIAVSEASWFTSERPAEIEDFWMDAYPEISVIP 177 (257)
T ss_dssp ECCTTSCSS---CTTCEEEEEEESCSCCCCHHHHHH-HHHTTEEEEEEEEEEEEEESSSCCCHHHHHHHHHHCTTCCBHH
T ss_pred ECChhhCCC---CCCCEEEEEecChHhhcCHHHHHH-HHHHHcCCCcEEEEEEeeccCCCChHHHHHHHHHhCCCCCCHH
Confidence 999976642 3579999999765 335677777 9999999999999987321111111000 00 12
Q ss_pred HHHHHHHHCCCcEeEEeecC
Q 021911 265 SEVKKLQQDQFKPFEQVTLE 284 (305)
Q Consensus 265 ~~~~~l~~~Gf~~~e~~~l~ 284 (305)
...+.|+++||++++...+.
T Consensus 178 ~~~~~l~~aGf~~v~~~~~~ 197 (257)
T 3f4k_A 178 TCIDKMERAGYTPTAHFILP 197 (257)
T ss_dssp HHHHHHHHTTEEEEEEEECC
T ss_pred HHHHHHHHCCCeEEEEEECC
Confidence 23466789999999876554
|
| >3e05_A Precorrin-6Y C5,15-methyltransferase (decarboxyla; porphyrin metabolism, S-adenosyl-methionine; 1.80A {Geobacter metallireducens} SCOP: c.66.1.0 | Back alignment and structure |
|---|
Probab=99.62 E-value=1.3e-14 Score=124.10 Aligned_cols=123 Identities=19% Similarity=0.176 Sum_probs=96.5
Q ss_pred CCCCCCEEEEEecCCCccHHHHHhhhCCCcEEEEEeCChHHHHHHHHHHHcC--CCeEEEEccCCCCcccccCCCcEeEE
Q 021911 140 WIKPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKR--TNVIPIIEDARHPAKYRMLVGMVDVI 217 (305)
Q Consensus 140 ~~~~g~~VLDlG~G~G~~t~~la~~~~~~~~V~avD~s~~~~~~l~~~a~~~--~nI~~~~~D~~~~~~~~~~~~~fD~V 217 (305)
.+.++.+|||+|||+|.++..+++.. +..+|+++|+|+.+++.+.+.++.. +++.+++.|+.+.... ...||+|
T Consensus 37 ~~~~~~~vLDiG~G~G~~~~~la~~~-~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~---~~~~D~i 112 (204)
T 3e05_A 37 RLQDDLVMWDIGAGSASVSIEASNLM-PNGRIFALERNPQYLGFIRDNLKKFVARNVTLVEAFAPEGLDD---LPDPDRV 112 (204)
T ss_dssp TCCTTCEEEEETCTTCHHHHHHHHHC-TTSEEEEEECCHHHHHHHHHHHHHHTCTTEEEEECCTTTTCTT---SCCCSEE
T ss_pred CCCCCCEEEEECCCCCHHHHHHHHHC-CCCEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeCChhhhhhc---CCCCCEE
Confidence 57789999999999999999999984 5679999999997666665555433 6899999999665432 2679999
Q ss_pred EEeCCChhHHHHHHHHHhccCCCCcEEEEEEcccccCCCCchhhhHHHHHHHHHHCCCc
Q 021911 218 FSDVAQPDQARILALNASYFLKAGGHFVISIKANCIDSTVPAEAVFQSEVKKLQQDQFK 276 (305)
Q Consensus 218 ~~d~~~~~~~~~l~~~a~~~LkpGG~lv~s~~~~~i~~~~~~~~v~~~~~~~l~~~Gf~ 276 (305)
+++.+..+...++. ++.++|||||+|++++. . ........+.+++.||.
T Consensus 113 ~~~~~~~~~~~~l~-~~~~~LkpgG~l~~~~~--~-------~~~~~~~~~~l~~~g~~ 161 (204)
T 3e05_A 113 FIGGSGGMLEEIID-AVDRRLKSEGVIVLNAV--T-------LDTLTKAVEFLEDHGYM 161 (204)
T ss_dssp EESCCTTCHHHHHH-HHHHHCCTTCEEEEEEC--B-------HHHHHHHHHHHHHTTCE
T ss_pred EECCCCcCHHHHHH-HHHHhcCCCeEEEEEec--c-------cccHHHHHHHHHHCCCc
Confidence 99988778888887 99999999999999862 1 11223345677889983
|
| >1xdz_A Methyltransferase GIDB; MCSG, protein structure initiative, structural genomics, methyltransferase fold, PSI; 1.60A {Bacillus subtilis} SCOP: c.66.1.20 | Back alignment and structure |
|---|
Probab=99.61 E-value=2.2e-14 Score=126.16 Aligned_cols=149 Identities=14% Similarity=0.058 Sum_probs=102.7
Q ss_pred CCCCCEEEEEecCCCccHHHHHhhhCCCcEEEEEeCChHHHHHHHHHHHcC--CCeEEEEccCCCCcccccCCCcEeEEE
Q 021911 141 IKPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKR--TNVIPIIEDARHPAKYRMLVGMVDVIF 218 (305)
Q Consensus 141 ~~~g~~VLDlG~G~G~~t~~la~~~~~~~~V~avD~s~~~~~~l~~~a~~~--~nI~~~~~D~~~~~~~~~~~~~fD~V~ 218 (305)
+.++.+|||+|||+|..+..++... +..+|++||+|+.++..+.+.++.. +||++++.|+.+.........+||+|+
T Consensus 68 ~~~~~~vLDiG~G~G~~~~~la~~~-~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~fD~V~ 146 (240)
T 1xdz_A 68 FNQVNTICDVGAGAGFPSLPIKICF-PHLHVTIVDSLNKRITFLEKLSEALQLENTTFCHDRAETFGQRKDVRESYDIVT 146 (240)
T ss_dssp GGGCCEEEEECSSSCTTHHHHHHHC-TTCEEEEEESCHHHHHHHHHHHHHHTCSSEEEEESCHHHHTTCTTTTTCEEEEE
T ss_pred cCCCCEEEEecCCCCHHHHHHHHhC-CCCEEEEEeCCHHHHHHHHHHHHHcCCCCEEEEeccHHHhcccccccCCccEEE
Confidence 3567899999999999999999753 5679999999996666555554433 579999999865432101146899999
Q ss_pred EeCCChhHHHHHHHHHhccCCCCcEEEEEEcccccCCCCchhhhHHHHHHHHHHCCCcEeEEeec-CCC-CCceEEEEEE
Q 021911 219 SDVAQPDQARILALNASYFLKAGGHFVISIKANCIDSTVPAEAVFQSEVKKLQQDQFKPFEQVTL-EPF-ERDHACVVGG 296 (305)
Q Consensus 219 ~d~~~~~~~~~l~~~a~~~LkpGG~lv~s~~~~~i~~~~~~~~v~~~~~~~l~~~Gf~~~e~~~l-~p~-~~~~~~vv~~ 296 (305)
++.. .+...++. .+.++|||||+|++.. .. . .........+.+++.||++.+...+ .|. ...+.+++..
T Consensus 147 ~~~~-~~~~~~l~-~~~~~LkpgG~l~~~~--g~----~-~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~l~~~~ 217 (240)
T 1xdz_A 147 ARAV-ARLSVLSE-LCLPLVKKNGLFVALK--AA----S-AEEELNAGKKAITTLGGELENIHSFKLPIEESDRNIMVIR 217 (240)
T ss_dssp EECC-SCHHHHHH-HHGGGEEEEEEEEEEE--CC------CHHHHHHHHHHHHHTTEEEEEEEEEECTTTCCEEEEEEEE
T ss_pred Eecc-CCHHHHHH-HHHHhcCCCCEEEEEe--CC----C-chHHHHHHHHHHHHcCCeEeEEEEEecCCCCCceEEEEEE
Confidence 9874 45566776 9999999999999875 11 1 1112233346678899998876543 333 2345555555
Q ss_pred EcC
Q 021911 297 YRM 299 (305)
Q Consensus 297 ~~~ 299 (305)
+..
T Consensus 218 k~~ 220 (240)
T 1xdz_A 218 KIK 220 (240)
T ss_dssp ECS
T ss_pred ecC
Confidence 543
|
| >4fsd_A Arsenic methyltransferase; rossmann fold; 1.75A {Cyanidioschyzon SP} PDB: 4fr0_A* 4fs8_A 3p7e_A 3qnh_A 3qhu_A | Back alignment and structure |
|---|
Probab=99.61 E-value=7.3e-15 Score=138.28 Aligned_cols=144 Identities=19% Similarity=0.227 Sum_probs=102.1
Q ss_pred CCCCCEEEEEecCCCccHHHHHhhhCCCcEEEEEeCChHHHHHHHHHHHcC----------CCeEEEEccCCCCccc---
Q 021911 141 IKPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKR----------TNVIPIIEDARHPAKY--- 207 (305)
Q Consensus 141 ~~~g~~VLDlG~G~G~~t~~la~~~~~~~~V~avD~s~~~~~~l~~~a~~~----------~nI~~~~~D~~~~~~~--- 207 (305)
+.++.+|||+|||+|.++..+++.+++..+|+++|+|+.++..+.+.++.. ++|.+++.|+.+....
T Consensus 81 ~~~~~~VLDlGcG~G~~~~~la~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~g~~~~~~v~~~~~d~~~l~~~~~~ 160 (383)
T 4fsd_A 81 SLEGATVLDLGCGTGRDVYLASKLVGEHGKVIGVDMLDNQLEVARKYVEYHAEKFFGSPSRSNVRFLKGFIENLATAEPE 160 (383)
T ss_dssp GGTTCEEEEESCTTSHHHHHHHHHHTTTCEEEEEECCHHHHHHHHHTHHHHHHHHHSSTTCCCEEEEESCTTCGGGCBSC
T ss_pred CCCCCEEEEecCccCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHhhhhcccccCCCceEEEEccHHHhhhcccC
Confidence 567899999999999999999999877789999999995544444333211 6899999999876321
Q ss_pred ccCCCcEeEEEEeCC---ChhHHHHHHHHHhccCCCCcEEEEEEcccccCCCCchh-------------hhHHHHHHHHH
Q 021911 208 RMLVGMVDVIFSDVA---QPDQARILALNASYFLKAGGHFVISIKANCIDSTVPAE-------------AVFQSEVKKLQ 271 (305)
Q Consensus 208 ~~~~~~fD~V~~d~~---~~~~~~~l~~~a~~~LkpGG~lv~s~~~~~i~~~~~~~-------------~v~~~~~~~l~ 271 (305)
....++||+|+++.. .++...++. ++.++|||||+|++++............ ....+..+.|+
T Consensus 161 ~~~~~~fD~V~~~~~l~~~~d~~~~l~-~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~ 239 (383)
T 4fsd_A 161 GVPDSSVDIVISNCVCNLSTNKLALFK-EIHRVLRDGGELYFSDVYADRRLSEAAQQDPILYGECLGGALYLEDFRRLVA 239 (383)
T ss_dssp CCCTTCEEEEEEESCGGGCSCHHHHHH-HHHHHEEEEEEEEEEEEEESSCCCHHHHHCHHHHHTTCTTCCBHHHHHHHHH
T ss_pred CCCCCCEEEEEEccchhcCCCHHHHHH-HHHHHcCCCCEEEEEEeccccccCHhHhhhHHHhhcccccCCCHHHHHHHHH
Confidence 233579999999877 467777887 9999999999999986322111000000 01123356678
Q ss_pred HCCCcEeEEeecCC
Q 021911 272 QDQFKPFEQVTLEP 285 (305)
Q Consensus 272 ~~Gf~~~e~~~l~p 285 (305)
++||+.++++...+
T Consensus 240 ~aGF~~v~~~~~~~ 253 (383)
T 4fsd_A 240 EAGFRDVRLVSVGP 253 (383)
T ss_dssp HTTCCCEEEEEEEE
T ss_pred HCCCceEEEEeccc
Confidence 99999887665443
|
| >3evz_A Methyltransferase; NYSGXRC, NEW YORK SGX research CE structural genomics, protein structure initiative, pyrococc furiosus, PSI-2; 2.20A {Pyrococcus furiosus} | Back alignment and structure |
|---|
Probab=99.61 E-value=3.3e-14 Score=123.62 Aligned_cols=130 Identities=17% Similarity=0.175 Sum_probs=96.2
Q ss_pred CCCCCCEEEEEecC-CCccHHHHHhhhCCCcEEEEEeCChHHHHHHHHHHHcC-CCeEEEEccCCCCcccccCCCcEeEE
Q 021911 140 WIKPGARVLYLGAA-SGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKR-TNVIPIIEDARHPAKYRMLVGMVDVI 217 (305)
Q Consensus 140 ~~~~g~~VLDlG~G-~G~~t~~la~~~~~~~~V~avD~s~~~~~~l~~~a~~~-~nI~~~~~D~~~~~~~~~~~~~fD~V 217 (305)
.++++.+|||+||| +|.++..++... ..+|+++|+|+.+++.+.+.++.. .++.+++.|+...... ...+||+|
T Consensus 52 ~~~~~~~vLDlG~G~~G~~~~~la~~~--~~~v~~vD~s~~~~~~a~~~~~~~~~~v~~~~~d~~~~~~~--~~~~fD~I 127 (230)
T 3evz_A 52 FLRGGEVALEIGTGHTAMMALMAEKFF--NCKVTATEVDEEFFEYARRNIERNNSNVRLVKSNGGIIKGV--VEGTFDVI 127 (230)
T ss_dssp TCCSSCEEEEECCTTTCHHHHHHHHHH--CCEEEEEECCHHHHHHHHHHHHHTTCCCEEEECSSCSSTTT--CCSCEEEE
T ss_pred hcCCCCEEEEcCCCHHHHHHHHHHHhc--CCEEEEEECCHHHHHHHHHHHHHhCCCcEEEeCCchhhhhc--ccCceeEE
Confidence 45788999999999 999999999985 469999999997766666665554 3799999997654332 24789999
Q ss_pred EEeCCChh----------------------HHHHHHHHHhccCCCCcEEEEEEcccccCCCCchhhhHHHHHHHHHHCCC
Q 021911 218 FSDVAQPD----------------------QARILALNASYFLKAGGHFVISIKANCIDSTVPAEAVFQSEVKKLQQDQF 275 (305)
Q Consensus 218 ~~d~~~~~----------------------~~~~l~~~a~~~LkpGG~lv~s~~~~~i~~~~~~~~v~~~~~~~l~~~Gf 275 (305)
++|+|... ...++. ++.++|||||+|++.+.. .........+.+++.||
T Consensus 128 ~~npp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~~~~LkpgG~l~~~~~~--------~~~~~~~~~~~l~~~g~ 198 (230)
T 3evz_A 128 FSAPPYYDKPLGRVLTEREAIGGGKYGEEFSVKLLE-EAFDHLNPGGKVALYLPD--------KEKLLNVIKERGIKLGY 198 (230)
T ss_dssp EECCCCC---------------CCSSSCHHHHHHHH-HHGGGEEEEEEEEEEEES--------CHHHHHHHHHHHHHTTC
T ss_pred EECCCCcCCccccccChhhhhccCccchHHHHHHHH-HHHHHhCCCeEEEEEecc--------cHhHHHHHHHHHHHcCC
Confidence 99988311 245565 899999999999998621 11222334567788999
Q ss_pred cEeEEee
Q 021911 276 KPFEQVT 282 (305)
Q Consensus 276 ~~~e~~~ 282 (305)
++..+..
T Consensus 199 ~~~~~~~ 205 (230)
T 3evz_A 199 SVKDIKF 205 (230)
T ss_dssp EEEEEEE
T ss_pred ceEEEEe
Confidence 7766543
|
| >3h2b_A SAM-dependent methyltransferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAH; 2.00A {Corynebacterium glutamicum atcc 13032} | Back alignment and structure |
|---|
Probab=99.60 E-value=1.1e-14 Score=124.10 Aligned_cols=146 Identities=13% Similarity=0.113 Sum_probs=105.5
Q ss_pred CCEEEEEecCCCccHHHHHhhhCCCcEEEEEeCChHHHHHHHHHHHcC-CCeEEEEccCCCCcccccCCCcEeEEEEeCC
Q 021911 144 GARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKR-TNVIPIIEDARHPAKYRMLVGMVDVIFSDVA 222 (305)
Q Consensus 144 g~~VLDlG~G~G~~t~~la~~~~~~~~V~avD~s~~~~~~l~~~a~~~-~nI~~~~~D~~~~~~~~~~~~~fD~V~~d~~ 222 (305)
+.+|||+|||+|.++..+++. ..+|+++|+|+ .+++.++++ +++.+++.|+.+.+. ...+||+|++...
T Consensus 42 ~~~vLDiGcG~G~~~~~l~~~---~~~v~gvD~s~----~~~~~a~~~~~~~~~~~~d~~~~~~---~~~~fD~v~~~~~ 111 (203)
T 3h2b_A 42 DGVILDVGSGTGRWTGHLASL---GHQIEGLEPAT----RLVELARQTHPSVTFHHGTITDLSD---SPKRWAGLLAWYS 111 (203)
T ss_dssp CSCEEEETCTTCHHHHHHHHT---TCCEEEECCCH----HHHHHHHHHCTTSEEECCCGGGGGG---SCCCEEEEEEESS
T ss_pred CCeEEEecCCCCHHHHHHHhc---CCeEEEEeCCH----HHHHHHHHhCCCCeEEeCccccccc---CCCCeEEEEehhh
Confidence 789999999999999999987 24899999999 556666554 689999999977542 3579999999665
Q ss_pred -----ChhHHHHHHHHHhccCCCCcEEEEEEccccc----CCCCc-hhh-hHHHHHHHHHHCCCcEeEEeecCCCCCceE
Q 021911 223 -----QPDQARILALNASYFLKAGGHFVISIKANCI----DSTVP-AEA-VFQSEVKKLQQDQFKPFEQVTLEPFERDHA 291 (305)
Q Consensus 223 -----~~~~~~~l~~~a~~~LkpGG~lv~s~~~~~i----~~~~~-~~~-v~~~~~~~l~~~Gf~~~e~~~l~p~~~~~~ 291 (305)
..+...++. ++.++|||||+|++++..... ..... ... -..+..+.|+++||++++.....+ +.|.
T Consensus 112 l~~~~~~~~~~~l~-~~~~~L~pgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~~~~~~~--~p~~ 188 (203)
T 3h2b_A 112 LIHMGPGELPDALV-ALRMAVEDGGGLLMSFFSGPSLEPMYHPVATAYRWPLPELAQALETAGFQVTSSHWDPR--FPHA 188 (203)
T ss_dssp STTCCTTTHHHHHH-HHHHTEEEEEEEEEEEECCSSCEEECCSSSCEEECCHHHHHHHHHHTTEEEEEEEECTT--SSEE
T ss_pred HhcCCHHHHHHHHH-HHHHHcCCCcEEEEEEccCCchhhhhchhhhhccCCHHHHHHHHHHCCCcEEEEEecCC--Ccch
Confidence 236677777 999999999999998743221 00000 001 122334667899999999888777 7777
Q ss_pred EEEEEEcCCCC
Q 021911 292 CVVGGYRMPKK 302 (305)
Q Consensus 292 ~vv~~~~~~~~ 302 (305)
++...+..+..
T Consensus 189 ~l~~~~~~~~~ 199 (203)
T 3h2b_A 189 YLTAEASLEHH 199 (203)
T ss_dssp EEEEEECC---
T ss_pred hhhhhhhhhhh
Confidence 77777666543
|
| >3grz_A L11 mtase, ribosomal protein L11 methyltransferase; methylase, SAM-binding domain, PSI-2, nysgxrc; 2.00A {Lactobacillus delbrueckii subsp} | Back alignment and structure |
|---|
Probab=99.60 E-value=2e-14 Score=122.92 Aligned_cols=139 Identities=12% Similarity=0.073 Sum_probs=102.9
Q ss_pred CCCCCEEEEEecCCCccHHHHHhhhCCCcEEEEEeCChHHHHHHHHHHHcC--CCeEEEEccCCCCcccccCCCcEeEEE
Q 021911 141 IKPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKR--TNVIPIIEDARHPAKYRMLVGMVDVIF 218 (305)
Q Consensus 141 ~~~g~~VLDlG~G~G~~t~~la~~~~~~~~V~avD~s~~~~~~l~~~a~~~--~nI~~~~~D~~~~~~~~~~~~~fD~V~ 218 (305)
+.++.+|||+|||+|.++..+++. +..+|+++|+|+.+++.+.+.+... .++.+++.|+.... ..+||+|+
T Consensus 58 ~~~~~~vLDiG~G~G~~~~~l~~~--~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~-----~~~fD~i~ 130 (205)
T 3grz_A 58 MVKPLTVADVGTGSGILAIAAHKL--GAKSVLATDISDESMTAAEENAALNGIYDIALQKTSLLADV-----DGKFDLIV 130 (205)
T ss_dssp CSSCCEEEEETCTTSHHHHHHHHT--TCSEEEEEESCHHHHHHHHHHHHHTTCCCCEEEESSTTTTC-----CSCEEEEE
T ss_pred ccCCCEEEEECCCCCHHHHHHHHC--CCCEEEEEECCHHHHHHHHHHHHHcCCCceEEEeccccccC-----CCCceEEE
Confidence 567899999999999999998875 4569999999996666665555543 45999999997643 47899999
Q ss_pred EeCCChhHHHHHHHHHhccCCCCcEEEEEEcccccCCCCchhhhHHHHHHHHHHCCCcEeEEeecCCCCCceEEEEEEEc
Q 021911 219 SDVAQPDQARILALNASYFLKAGGHFVISIKANCIDSTVPAEAVFQSEVKKLQQDQFKPFEQVTLEPFERDHACVVGGYR 298 (305)
Q Consensus 219 ~d~~~~~~~~~l~~~a~~~LkpGG~lv~s~~~~~i~~~~~~~~v~~~~~~~l~~~Gf~~~e~~~l~p~~~~~~~vv~~~~ 298 (305)
++.+......++. ++.++|||+|+|++++... .......+.+++.||++++.... ..+..++.+.+
T Consensus 131 ~~~~~~~~~~~l~-~~~~~L~~gG~l~~~~~~~---------~~~~~~~~~~~~~Gf~~~~~~~~----~~w~~~~~~~~ 196 (205)
T 3grz_A 131 ANILAEILLDLIP-QLDSHLNEDGQVIFSGIDY---------LQLPKIEQALAENSFQIDLKMRA----GRWIGLAISRK 196 (205)
T ss_dssp EESCHHHHHHHGG-GSGGGEEEEEEEEEEEEEG---------GGHHHHHHHHHHTTEEEEEEEEE----TTEEEEEEEEC
T ss_pred ECCcHHHHHHHHH-HHHHhcCCCCEEEEEecCc---------ccHHHHHHHHHHcCCceEEeecc----CCEEEEEEecc
Confidence 9998777777777 9999999999999975211 01223346678899999887643 33454555444
Q ss_pred CC
Q 021911 299 MP 300 (305)
Q Consensus 299 ~~ 300 (305)
..
T Consensus 197 ~~ 198 (205)
T 3grz_A 197 HE 198 (205)
T ss_dssp C-
T ss_pred cc
Confidence 43
|
| >1yb2_A Hypothetical protein TA0852; structural genomics, methyltransferase, thermoplasma acidoph midwest center for structural genomics, MCSG; 2.01A {Thermoplasma acidophilum} SCOP: c.66.1.13 | Back alignment and structure |
|---|
Probab=99.60 E-value=1.7e-14 Score=129.51 Aligned_cols=128 Identities=18% Similarity=0.200 Sum_probs=100.3
Q ss_pred cCCCCCCEEEEEecCCCccHHHHHhhhCCCcEEEEEeCChHHHHHHHHHHHcC---CCeEEEEccCCCCcccccCCCcEe
Q 021911 139 IWIKPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKR---TNVIPIIEDARHPAKYRMLVGMVD 215 (305)
Q Consensus 139 ~~~~~g~~VLDlG~G~G~~t~~la~~~~~~~~V~avD~s~~~~~~l~~~a~~~---~nI~~~~~D~~~~~~~~~~~~~fD 215 (305)
+.+.++.+|||+|||+|.++.++++.+.+..+|+++|+|+.+++.+.+.++.. +++.+++.|+.+.. ...+||
T Consensus 106 ~~~~~~~~VLD~G~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~g~~~v~~~~~d~~~~~----~~~~fD 181 (275)
T 1yb2_A 106 CGLRPGMDILEVGVGSGNMSSYILYALNGKGTLTVVERDEDNLKKAMDNLSEFYDIGNVRTSRSDIADFI----SDQMYD 181 (275)
T ss_dssp CCCCTTCEEEEECCTTSHHHHHHHHHHTTSSEEEEECSCHHHHHHHHHHHHTTSCCTTEEEECSCTTTCC----CSCCEE
T ss_pred cCCCCcCEEEEecCCCCHHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHhcCCCCcEEEEECchhccC----cCCCcc
Confidence 36788999999999999999999998666789999999997777776666554 58999999998732 246899
Q ss_pred EEEEeCCChhHHHHHHHHHhccCCCCcEEEEEEcccccCCCCchhhhHHHHHHHHHHCCCcEeEEee
Q 021911 216 VIFSDVAQPDQARILALNASYFLKAGGHFVISIKANCIDSTVPAEAVFQSEVKKLQQDQFKPFEQVT 282 (305)
Q Consensus 216 ~V~~d~~~~~~~~~l~~~a~~~LkpGG~lv~s~~~~~i~~~~~~~~v~~~~~~~l~~~Gf~~~e~~~ 282 (305)
+|+++++.++ .++. ++.++|||||+|++++. + .....+..+.|++.||+.++...
T Consensus 182 ~Vi~~~~~~~--~~l~-~~~~~LkpgG~l~i~~~--~-------~~~~~~~~~~l~~~Gf~~~~~~~ 236 (275)
T 1yb2_A 182 AVIADIPDPW--NHVQ-KIASMMKPGSVATFYLP--N-------FDQSEKTVLSLSASGMHHLETVE 236 (275)
T ss_dssp EEEECCSCGG--GSHH-HHHHTEEEEEEEEEEES--S-------HHHHHHHHHHSGGGTEEEEEEEE
T ss_pred EEEEcCcCHH--HHHH-HHHHHcCCCCEEEEEeC--C-------HHHHHHHHHHHHHCCCeEEEEEE
Confidence 9999887653 5566 88999999999999982 2 11223335666788999887665
|
| >1yzh_A TRNA (guanine-N(7)-)-methyltransferase; alpha-beta-alpha sandwich, S-adenosylmeth dependent, structural genomics, PSI; 2.02A {Streptococcus pneumoniae} SCOP: c.66.1.53 | Back alignment and structure |
|---|
Probab=99.58 E-value=2.5e-14 Score=123.39 Aligned_cols=129 Identities=13% Similarity=0.150 Sum_probs=97.5
Q ss_pred CCCCCEEEEEecCCCccHHHHHhhhCCCcEEEEEeCChHHHHHHHHHHHcC--CCeEEEEccCCCCcccccCCCcEeEEE
Q 021911 141 IKPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKR--TNVIPIIEDARHPAKYRMLVGMVDVIF 218 (305)
Q Consensus 141 ~~~g~~VLDlG~G~G~~t~~la~~~~~~~~V~avD~s~~~~~~l~~~a~~~--~nI~~~~~D~~~~~~~~~~~~~fD~V~ 218 (305)
..++.+|||||||+|.++..+|... +..+|++||+|+.++..+.+.+... +||.+++.|+.+.... ....+||+|+
T Consensus 39 ~~~~~~vLDiGcG~G~~~~~la~~~-p~~~v~gvD~s~~~l~~a~~~~~~~~~~~v~~~~~d~~~~~~~-~~~~~~D~i~ 116 (214)
T 1yzh_A 39 GNDNPIHVEVGSGKGAFVSGMAKQN-PDINYIGIDIQKSVLSYALDKVLEVGVPNIKLLWVDGSDLTDY-FEDGEIDRLY 116 (214)
T ss_dssp TSCCCEEEEESCTTSHHHHHHHHHC-TTSEEEEEESCHHHHHHHHHHHHHHCCSSEEEEECCSSCGGGT-SCTTCCSEEE
T ss_pred CCCCCeEEEEccCcCHHHHHHHHHC-CCCCEEEEEcCHHHHHHHHHHHHHcCCCCEEEEeCCHHHHHhh-cCCCCCCEEE
Confidence 3567899999999999999999985 5679999999997766666655433 6899999999875421 2346899999
Q ss_pred EeCCChh-----------HHHHHHHHHhccCCCCcEEEEEEcccccCCCCchhhhHHHHHHHHHHCCCcEeEEe
Q 021911 219 SDVAQPD-----------QARILALNASYFLKAGGHFVISIKANCIDSTVPAEAVFQSEVKKLQQDQFKPFEQV 281 (305)
Q Consensus 219 ~d~~~~~-----------~~~~l~~~a~~~LkpGG~lv~s~~~~~i~~~~~~~~v~~~~~~~l~~~Gf~~~e~~ 281 (305)
++.+.+. +..++. ++.++|||||.|++.+. ....+....+.+.+.||++.+..
T Consensus 117 ~~~~~~~~~~~~~~~~~~~~~~l~-~~~~~LkpgG~l~~~~~---------~~~~~~~~~~~~~~~g~~~~~~~ 180 (214)
T 1yzh_A 117 LNFSDPWPKKRHEKRRLTYKTFLD-TFKRILPENGEIHFKTD---------NRGLFEYSLVSFSQYGMKLNGVW 180 (214)
T ss_dssp EESCCCCCSGGGGGGSTTSHHHHH-HHHHHSCTTCEEEEEES---------CHHHHHHHHHHHHHHTCEEEEEE
T ss_pred EECCCCccccchhhhccCCHHHHH-HHHHHcCCCcEEEEEeC---------CHHHHHHHHHHHHHCCCeeeecc
Confidence 9988542 345666 89999999999999871 12233344566777899887654
|
| >3dlc_A Putative S-adenosyl-L-methionine-dependent methyltransferase; structural genomics, joint center for structural genomics; HET: MSE SAM; 1.15A {Methanococcus maripaludis} | Back alignment and structure |
|---|
Probab=99.58 E-value=2e-14 Score=123.11 Aligned_cols=118 Identities=17% Similarity=0.225 Sum_probs=90.5
Q ss_pred cCchhhHHHHHHHccccccCCCCCCEEEEEecCCCccHHHHHhhhCCCcEEEEEeCChHHHHHHHHHHHcC---CCeEEE
Q 021911 121 WNPFRSKLAAAVLGGVDNIWIKPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKR---TNVIPI 197 (305)
Q Consensus 121 ~~~~~s~l~a~ll~~l~~~~~~~g~~VLDlG~G~G~~t~~la~~~~~~~~V~avD~s~~~~~~l~~~a~~~---~nI~~~ 197 (305)
|.|....+...++..+ .++++ +|||+|||+|.++..+++. +..+|+++|+|+.++..+.+.++.. .++.++
T Consensus 25 ~~~~~~~~~~~~~~~~---~~~~~-~vLdiG~G~G~~~~~l~~~--~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~ 98 (219)
T 3dlc_A 25 FAPIYPIIAENIINRF---GITAG-TCIDIGSGPGALSIALAKQ--SDFSIRALDFSKHMNEIALKNIADANLNDRIQIV 98 (219)
T ss_dssp TTTHHHHHHHHHHHHH---CCCEE-EEEEETCTTSHHHHHHHHH--SEEEEEEEESCHHHHHHHHHHHHHTTCTTTEEEE
T ss_pred hccccHHHHHHHHHhc---CCCCC-EEEEECCCCCHHHHHHHHc--CCCeEEEEECCHHHHHHHHHHHHhccccCceEEE
Confidence 4444455555554332 34555 9999999999999999998 5579999999996666665555543 479999
Q ss_pred EccCCCCcccccCCCcEeEEEEeCC---ChhHHHHHHHHHhccCCCCcEEEEEE
Q 021911 198 IEDARHPAKYRMLVGMVDVIFSDVA---QPDQARILALNASYFLKAGGHFVISI 248 (305)
Q Consensus 198 ~~D~~~~~~~~~~~~~fD~V~~d~~---~~~~~~~l~~~a~~~LkpGG~lv~s~ 248 (305)
+.|+.+.+ ....+||+|+++.. .++...++. ++.++|||||+|+++.
T Consensus 99 ~~d~~~~~---~~~~~~D~v~~~~~l~~~~~~~~~l~-~~~~~L~pgG~l~~~~ 148 (219)
T 3dlc_A 99 QGDVHNIP---IEDNYADLIVSRGSVFFWEDVATAFR-EIYRILKSGGKTYIGG 148 (219)
T ss_dssp ECBTTBCS---SCTTCEEEEEEESCGGGCSCHHHHHH-HHHHHEEEEEEEEEEE
T ss_pred EcCHHHCC---CCcccccEEEECchHhhccCHHHHHH-HHHHhCCCCCEEEEEe
Confidence 99998754 23579999999776 456677777 9999999999999986
|
| >3ujc_A Phosphoethanolamine N-methyltransferase; parasite; HET: PC; 1.19A {Plasmodium falciparum} PDB: 3uj9_A* 3uj6_A* 3uj7_A* 3uj8_A* 3uja_A 3ujb_A* 4fgz_A* 3ujd_A* | Back alignment and structure |
|---|
Probab=99.58 E-value=3.6e-14 Score=125.49 Aligned_cols=147 Identities=18% Similarity=0.233 Sum_probs=103.8
Q ss_pred hhHHHHHHHccccccCCCCCCEEEEEecCCCccHHHHHhhhCCCcEEEEEeCChHHHHHHHHHHHcC----CCeEEEEcc
Q 021911 125 RSKLAAAVLGGVDNIWIKPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKR----TNVIPIIED 200 (305)
Q Consensus 125 ~s~l~a~ll~~l~~~~~~~g~~VLDlG~G~G~~t~~la~~~~~~~~V~avD~s~~~~~~l~~~a~~~----~nI~~~~~D 200 (305)
...+...++. .+.+.++.+|||+|||+|.++..+++.+ ..+|+++|+|+ .+++.++++ +++.+++.|
T Consensus 40 ~~~~~~~~~~---~~~~~~~~~vLdiG~G~G~~~~~l~~~~--~~~v~~vD~s~----~~~~~a~~~~~~~~~~~~~~~d 110 (266)
T 3ujc_A 40 GLEATKKILS---DIELNENSKVLDIGSGLGGGCMYINEKY--GAHTHGIDICS----NIVNMANERVSGNNKIIFEAND 110 (266)
T ss_dssp HHHHHHHHTT---TCCCCTTCEEEEETCTTSHHHHHHHHHH--CCEEEEEESCH----HHHHHHHHTCCSCTTEEEEECC
T ss_pred hHHHHHHHHH---hcCCCCCCEEEEECCCCCHHHHHHHHHc--CCEEEEEeCCH----HHHHHHHHHhhcCCCeEEEECc
Confidence 3344455543 3357788999999999999999999986 36999999999 555555544 689999999
Q ss_pred CCCCcccccCCCcEeEEEEeCC---C--hhHHHHHHHHHhccCCCCcEEEEEEcccccCCCCchhh------------hH
Q 021911 201 ARHPAKYRMLVGMVDVIFSDVA---Q--PDQARILALNASYFLKAGGHFVISIKANCIDSTVPAEA------------VF 263 (305)
Q Consensus 201 ~~~~~~~~~~~~~fD~V~~d~~---~--~~~~~~l~~~a~~~LkpGG~lv~s~~~~~i~~~~~~~~------------v~ 263 (305)
+.+.+. ..++||+|++... . ++...++. ++.++|||||+|++++............. ..
T Consensus 111 ~~~~~~---~~~~fD~v~~~~~l~~~~~~~~~~~l~-~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 186 (266)
T 3ujc_A 111 ILTKEF---PENNFDLIYSRDAILALSLENKNKLFQ-KCYKWLKPTGTLLITDYCATEKENWDDEFKEYVKQRKYTLITV 186 (266)
T ss_dssp TTTCCC---CTTCEEEEEEESCGGGSCHHHHHHHHH-HHHHHEEEEEEEEEEEEEESCGGGCCHHHHHHHHHHTCCCCCH
T ss_pred cccCCC---CCCcEEEEeHHHHHHhcChHHHHHHHH-HHHHHcCCCCEEEEEEeccCCcccchHHHHHHHhcCCCCCCCH
Confidence 987642 3579999999765 2 56667776 99999999999999874221100111100 01
Q ss_pred HHHHHHHHHCCCcEeEEeecC
Q 021911 264 QSEVKKLQQDQFKPFEQVTLE 284 (305)
Q Consensus 264 ~~~~~~l~~~Gf~~~e~~~l~ 284 (305)
....+.|+++||++++...+.
T Consensus 187 ~~~~~~l~~~Gf~~~~~~~~~ 207 (266)
T 3ujc_A 187 EEYADILTACNFKNVVSKDLS 207 (266)
T ss_dssp HHHHHHHHHTTCEEEEEEECH
T ss_pred HHHHHHHHHcCCeEEEEEeCC
Confidence 122456688999998877543
|
| >3g89_A Ribosomal RNA small subunit methyltransferase G; 16S rRNA methyltransferase, translation, cytoplasm, rRNA processing; HET: HIC SAM AMP; 1.50A {Thermus thermophilus} PDB: 3g88_A* 3g8a_A* 3g8b_A* | Back alignment and structure |
|---|
Probab=99.58 E-value=4e-14 Score=125.69 Aligned_cols=147 Identities=15% Similarity=0.025 Sum_probs=101.8
Q ss_pred CCCCCEEEEEecCCCccHHHHHhhhCCCcEEEEEeCChHHHHHHHHHHHcC--CCeEEEEccCCCCcccccCCCcEeEEE
Q 021911 141 IKPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKR--TNVIPIIEDARHPAKYRMLVGMVDVIF 218 (305)
Q Consensus 141 ~~~g~~VLDlG~G~G~~t~~la~~~~~~~~V~avD~s~~~~~~l~~~a~~~--~nI~~~~~D~~~~~~~~~~~~~fD~V~ 218 (305)
+.++.+|||+|||+|..+..+|... +..+|++||+|+.++..+.++++.. .||++++.|+.+.........+||+|+
T Consensus 78 ~~~~~~vLDiG~G~G~~~i~la~~~-~~~~v~~vD~s~~~~~~a~~~~~~~~l~~v~~~~~d~~~~~~~~~~~~~fD~I~ 156 (249)
T 3g89_A 78 WQGPLRVLDLGTGAGFPGLPLKIVR-PELELVLVDATRKKVAFVERAIEVLGLKGARALWGRAEVLAREAGHREAYARAV 156 (249)
T ss_dssp CCSSCEEEEETCTTTTTHHHHHHHC-TTCEEEEEESCHHHHHHHHHHHHHHTCSSEEEEECCHHHHTTSTTTTTCEEEEE
T ss_pred cCCCCEEEEEcCCCCHHHHHHHHHC-CCCEEEEEECCHHHHHHHHHHHHHhCCCceEEEECcHHHhhcccccCCCceEEE
Confidence 4568999999999999999999875 6789999999997766666665543 579999999876542111236899999
Q ss_pred EeCCChhHHHHHHHHHhccCCCCcEEEEEEcccccCCCCchhhhHHHHHHHHHHCCCcEeEEeecC-CC-CCceEEEEEE
Q 021911 219 SDVAQPDQARILALNASYFLKAGGHFVISIKANCIDSTVPAEAVFQSEVKKLQQDQFKPFEQVTLE-PF-ERDHACVVGG 296 (305)
Q Consensus 219 ~d~~~~~~~~~l~~~a~~~LkpGG~lv~s~~~~~i~~~~~~~~v~~~~~~~l~~~Gf~~~e~~~l~-p~-~~~~~~vv~~ 296 (305)
+.... +...++. .+.++|||||+|++.. +. ............++..||++.++..+. |. .....+++..
T Consensus 157 s~a~~-~~~~ll~-~~~~~LkpgG~l~~~~---g~----~~~~e~~~~~~~l~~~G~~~~~~~~~~~p~~~~~R~l~~~~ 227 (249)
T 3g89_A 157 ARAVA-PLCVLSE-LLLPFLEVGGAAVAMK---GP----RVEEELAPLPPALERLGGRLGEVLALQLPLSGEARHLVVLE 227 (249)
T ss_dssp EESSC-CHHHHHH-HHGGGEEEEEEEEEEE---CS----CCHHHHTTHHHHHHHHTEEEEEEEEEECTTTCCEEEEEEEE
T ss_pred ECCcC-CHHHHHH-HHHHHcCCCeEEEEEe---CC----CcHHHHHHHHHHHHHcCCeEEEEEEeeCCCCCCcEEEEEEE
Confidence 98654 3355665 8999999999999875 11 111111222355667799988876552 32 2334444444
Q ss_pred E
Q 021911 297 Y 297 (305)
Q Consensus 297 ~ 297 (305)
+
T Consensus 228 k 228 (249)
T 3g89_A 228 K 228 (249)
T ss_dssp E
T ss_pred e
Confidence 4
|
| >3tfw_A Putative O-methyltransferase; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium; 1.88A {Klebsiella pneumoniae subsp} | Back alignment and structure |
|---|
Probab=99.57 E-value=5e-14 Score=124.70 Aligned_cols=107 Identities=15% Similarity=0.161 Sum_probs=86.9
Q ss_pred CCCCCEEEEEecCCCccHHHHHhhhCCCcEEEEEeCChHHHHHHHHHHHcC---CCeEEEEccCCCCcccccCCCcEeEE
Q 021911 141 IKPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKR---TNVIPIIEDARHPAKYRMLVGMVDVI 217 (305)
Q Consensus 141 ~~~g~~VLDlG~G~G~~t~~la~~~~~~~~V~avD~s~~~~~~l~~~a~~~---~nI~~~~~D~~~~~~~~~~~~~fD~V 217 (305)
+.++.+|||+|||+|..+.++|+.+.+.++|++||+|+.++..+.+.++.. ++|.+++.|+.+..+......+||+|
T Consensus 61 ~~~~~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~l~~~~~~~~fD~V 140 (248)
T 3tfw_A 61 LTQAKRILEIGTLGGYSTIWMARELPADGQLLTLEADAHHAQVARENLQLAGVDQRVTLREGPALQSLESLGECPAFDLI 140 (248)
T ss_dssp HHTCSEEEEECCTTSHHHHHHHTTSCTTCEEEEEECCHHHHHHHHHHHHHTTCTTTEEEEESCHHHHHHTCCSCCCCSEE
T ss_pred hcCCCEEEEecCCchHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHhcCCCCCeEEE
Confidence 456799999999999999999998865789999999997766666655543 47999999987643221113489999
Q ss_pred EEeCCChhHHHHHHHHHhccCCCCcEEEEEE
Q 021911 218 FSDVAQPDQARILALNASYFLKAGGHFVISI 248 (305)
Q Consensus 218 ~~d~~~~~~~~~l~~~a~~~LkpGG~lv~s~ 248 (305)
++|.+.+.....+. ++.++|||||+|++..
T Consensus 141 ~~d~~~~~~~~~l~-~~~~~LkpGG~lv~~~ 170 (248)
T 3tfw_A 141 FIDADKPNNPHYLR-WALRYSRPGTLIIGDN 170 (248)
T ss_dssp EECSCGGGHHHHHH-HHHHTCCTTCEEEEEC
T ss_pred EECCchHHHHHHHH-HHHHhcCCCeEEEEeC
Confidence 99999888888887 9999999999999875
|
| >3njr_A Precorrin-6Y methylase; methyltransferase, decarboxylase, transferase; HET: SAH PG4; 2.70A {Rhodobacter capsulatus} | Back alignment and structure |
|---|
Probab=99.57 E-value=4.8e-14 Score=121.24 Aligned_cols=123 Identities=11% Similarity=0.045 Sum_probs=93.3
Q ss_pred CCCCCCEEEEEecCCCccHHHHHhhhCCCcEEEEEeCChHHHHHHHHHHHcC--C-CeEEEEccCCCCcccccCCCcEeE
Q 021911 140 WIKPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKR--T-NVIPIIEDARHPAKYRMLVGMVDV 216 (305)
Q Consensus 140 ~~~~g~~VLDlG~G~G~~t~~la~~~~~~~~V~avD~s~~~~~~l~~~a~~~--~-nI~~~~~D~~~~~~~~~~~~~fD~ 216 (305)
.+.++.+|||+|||+|.++..+|+. ..+|+++|+|+.+++.+.+.++.. + ++.+++.|+.+.... ...||+
T Consensus 52 ~~~~~~~vLDlGcG~G~~~~~la~~---~~~v~~vD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~~~~---~~~~D~ 125 (204)
T 3njr_A 52 APRRGELLWDIGGGSGSVSVEWCLA---GGRAITIEPRADRIENIQKNIDTYGLSPRMRAVQGTAPAALAD---LPLPEA 125 (204)
T ss_dssp CCCTTCEEEEETCTTCHHHHHHHHT---TCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCTTGGGTT---SCCCSE
T ss_pred CCCCCCEEEEecCCCCHHHHHHHHc---CCEEEEEeCCHHHHHHHHHHHHHcCCCCCEEEEeCchhhhccc---CCCCCE
Confidence 5788999999999999999999987 468999999997766666655543 4 899999999874322 357999
Q ss_pred EEEeCCChhHHHHHHHHHhccCCCCcEEEEEEcccccCCCCchhhhHHHHHHHHHHCCCcEeEE
Q 021911 217 IFSDVAQPDQARILALNASYFLKAGGHFVISIKANCIDSTVPAEAVFQSEVKKLQQDQFKPFEQ 280 (305)
Q Consensus 217 V~~d~~~~~~~~~l~~~a~~~LkpGG~lv~s~~~~~i~~~~~~~~v~~~~~~~l~~~Gf~~~e~ 280 (305)
|+++... ++. ++. ++.++|||||+|++++. . ..-+....+.+++.+|++.+.
T Consensus 126 v~~~~~~-~~~-~l~-~~~~~LkpgG~lv~~~~--~-------~~~~~~~~~~l~~~g~~i~~i 177 (204)
T 3njr_A 126 VFIGGGG-SQA-LYD-RLWEWLAPGTRIVANAV--T-------LESETLLTQLHARHGGQLLRI 177 (204)
T ss_dssp EEECSCC-CHH-HHH-HHHHHSCTTCEEEEEEC--S-------HHHHHHHHHHHHHHCSEEEEE
T ss_pred EEECCcc-cHH-HHH-HHHHhcCCCcEEEEEec--C-------cccHHHHHHHHHhCCCcEEEE
Confidence 9998754 344 666 99999999999999871 1 122234456677778877664
|
| >1pjz_A Thiopurine S-methyltransferase; polymorphism, S-adenosylmethionine, drug metabolism; NMR {Pseudomonas syringae PV} SCOP: c.66.1.36 | Back alignment and structure |
|---|
Probab=99.57 E-value=2e-14 Score=123.45 Aligned_cols=137 Identities=14% Similarity=0.075 Sum_probs=91.5
Q ss_pred CCCCCCEEEEEecCCCccHHHHHhhhCCCcEEEEEeCChHHHHHHHHHHHc--------------CCCeEEEEccCCCCc
Q 021911 140 WIKPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKK--------------RTNVIPIIEDARHPA 205 (305)
Q Consensus 140 ~~~~g~~VLDlG~G~G~~t~~la~~~~~~~~V~avD~s~~~~~~l~~~a~~--------------~~nI~~~~~D~~~~~ 205 (305)
.+.++.+|||+|||+|..+..||+. + .+|++||+|+.+++.+.+.+.. ..+|.++++|+.+.+
T Consensus 19 ~~~~~~~vLD~GCG~G~~~~~la~~-g--~~V~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~l~ 95 (203)
T 1pjz_A 19 NVVPGARVLVPLCGKSQDMSWLSGQ-G--YHVVGAELSEAAVERYFTERGEQPHITSQGDFKVYAAPGIEIWCGDFFALT 95 (203)
T ss_dssp CCCTTCEEEETTTCCSHHHHHHHHH-C--CEEEEEEECHHHHHHHHHHHCSCSEEEEETTEEEEECSSSEEEEECCSSST
T ss_pred ccCCCCEEEEeCCCCcHhHHHHHHC-C--CeEEEEeCCHHHHHHHHHHccCCcccccccccccccCCccEEEECccccCC
Confidence 4678899999999999999999987 2 4899999999666665555432 258999999998875
Q ss_pred ccccCCCcEeEEEEeCC----C-hhHHHHHHHHHhccCCCCcEEEEEEcccccC-CCCchhhhHHHHHHHH-HHCCCcEe
Q 021911 206 KYRMLVGMVDVIFSDVA----Q-PDQARILALNASYFLKAGGHFVISIKANCID-STVPAEAVFQSEVKKL-QQDQFKPF 278 (305)
Q Consensus 206 ~~~~~~~~fD~V~~d~~----~-~~~~~~l~~~a~~~LkpGG~lv~s~~~~~i~-~~~~~~~v~~~~~~~l-~~~Gf~~~ 278 (305)
... .++||+|++... . ++....+. +++++|||||++++.+...... ...++..+-.+++..+ .+ ||+++
T Consensus 96 ~~~--~~~fD~v~~~~~l~~l~~~~~~~~l~-~~~r~LkpgG~~~l~~~~~~~~~~~~~~~~~~~~el~~~~~~-gf~i~ 171 (203)
T 1pjz_A 96 ARD--IGHCAAFYDRAAMIALPADMRERYVQ-HLEALMPQACSGLLITLEYDQALLEGPPFSVPQTWLHRVMSG-NWEVT 171 (203)
T ss_dssp HHH--HHSEEEEEEESCGGGSCHHHHHHHHH-HHHHHSCSEEEEEEEEESSCSSSSSSCCCCCCHHHHHHTSCS-SEEEE
T ss_pred ccc--CCCEEEEEECcchhhCCHHHHHHHHH-HHHHHcCCCcEEEEEEEecCccccCCCCCCCCHHHHHHHhcC-CcEEE
Confidence 320 158999998554 2 23444565 9999999999955554211100 1111122223444444 44 89876
Q ss_pred EEeec
Q 021911 279 EQVTL 283 (305)
Q Consensus 279 e~~~l 283 (305)
.....
T Consensus 172 ~~~~~ 176 (203)
T 1pjz_A 172 KVGGQ 176 (203)
T ss_dssp EEEES
T ss_pred Eeccc
Confidence 65443
|
| >3e8s_A Putative SAM dependent methyltransferase; NP_744700.1, structural genomics, joint center for structural genom JCSG; HET: SAH; 2.10A {Pseudomonas putida KT2440} | Back alignment and structure |
|---|
Probab=99.57 E-value=2.3e-14 Score=123.45 Aligned_cols=149 Identities=17% Similarity=0.131 Sum_probs=104.1
Q ss_pred CCCCCEEEEEecCCCccHHHHHhhhCCCcEEEEEeCChHHHHHHHHHHHcCCCeEEEEccCCCCcccccC-CCcEeEEEE
Q 021911 141 IKPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKRTNVIPIIEDARHPAKYRML-VGMVDVIFS 219 (305)
Q Consensus 141 ~~~g~~VLDlG~G~G~~t~~la~~~~~~~~V~avD~s~~~~~~l~~~a~~~~nI~~~~~D~~~~~~~~~~-~~~fD~V~~ 219 (305)
..++.+|||+|||+|.++..+++. ..+|+++|+|+ .+++.++++.++.+++.|+.+....... ..+||+|++
T Consensus 50 ~~~~~~vLdiG~G~G~~~~~l~~~---~~~v~~vD~s~----~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~fD~v~~ 122 (227)
T 3e8s_A 50 GRQPERVLDLGCGEGWLLRALADR---GIEAVGVDGDR----TLVDAARAAGAGEVHLASYAQLAEAKVPVGKDYDLICA 122 (227)
T ss_dssp HTCCSEEEEETCTTCHHHHHHHTT---TCEEEEEESCH----HHHHHHHHTCSSCEEECCHHHHHTTCSCCCCCEEEEEE
T ss_pred cCCCCEEEEeCCCCCHHHHHHHHC---CCEEEEEcCCH----HHHHHHHHhcccccchhhHHhhcccccccCCCccEEEE
Confidence 456699999999999999999987 34899999999 7777777777888999887665222112 346999999
Q ss_pred eCC--ChhHHHHHHHHHhccCCCCcEEEEEEcccccCCCC-------------------ch--hh-hHHHHHHHHHHCCC
Q 021911 220 DVA--QPDQARILALNASYFLKAGGHFVISIKANCIDSTV-------------------PA--EA-VFQSEVKKLQQDQF 275 (305)
Q Consensus 220 d~~--~~~~~~~l~~~a~~~LkpGG~lv~s~~~~~i~~~~-------------------~~--~~-v~~~~~~~l~~~Gf 275 (305)
... .++...++. ++.++|||||+|++++......... .. .. -..+..+.|+++||
T Consensus 123 ~~~l~~~~~~~~l~-~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf 201 (227)
T 3e8s_A 123 NFALLHQDIIELLS-AMRTLLVPGGALVIQTLHPWSVADGDYQDGWREESFAGFAGDWQPMPWYFRTLASWLNALDMAGL 201 (227)
T ss_dssp ESCCCSSCCHHHHH-HHHHTEEEEEEEEEEECCTTTTCTTCCSCEEEEECCTTSSSCCCCEEEEECCHHHHHHHHHHTTE
T ss_pred CchhhhhhHHHHHH-HHHHHhCCCeEEEEEecCccccCccccccccchhhhhccccCcccceEEEecHHHHHHHHHHcCC
Confidence 765 456667777 9999999999999998432211100 00 00 12334567799999
Q ss_pred cEeEEeecCCCCC---ceEEEEEEE
Q 021911 276 KPFEQVTLEPFER---DHACVVGGY 297 (305)
Q Consensus 276 ~~~e~~~l~p~~~---~~~~vv~~~ 297 (305)
+++++....+-+. ...++++++
T Consensus 202 ~~~~~~~~~~~~~~~~~~~~~va~k 226 (227)
T 3e8s_A 202 RLVSLQEPQHPQSAVPQSLLMVAER 226 (227)
T ss_dssp EEEEEECCCCTTCSSCSCEEEEEEE
T ss_pred eEEEEecCCCCCCCCceeEEEEeec
Confidence 9998776433222 255666654
|
| >2b3t_A Protein methyltransferase HEMK; translation termination, methylation, conformational changes; HET: SAH; 3.10A {Escherichia coli} SCOP: c.66.1.30 PDB: 1t43_A* | Back alignment and structure |
|---|
Probab=99.57 E-value=5.1e-14 Score=126.39 Aligned_cols=140 Identities=16% Similarity=0.165 Sum_probs=101.2
Q ss_pred CchhhHHHHHHHccccccCCCCCCEEEEEecCCCccHHHHHhhhCCCcEEEEEeCChHHHHHHHHHHHcC--CCeEEEEc
Q 021911 122 NPFRSKLAAAVLGGVDNIWIKPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKR--TNVIPIIE 199 (305)
Q Consensus 122 ~~~~s~l~a~ll~~l~~~~~~~g~~VLDlG~G~G~~t~~la~~~~~~~~V~avD~s~~~~~~l~~~a~~~--~nI~~~~~ 199 (305)
.|....++..++..+. .++.+|||+|||+|.++..++..+ +..+|+++|+|+.++..+.++++.. +++.+++.
T Consensus 92 r~~te~l~~~~l~~~~----~~~~~vLDlG~GsG~~~~~la~~~-~~~~v~~vD~s~~~l~~a~~n~~~~~~~~v~~~~~ 166 (276)
T 2b3t_A 92 RPDTECLVEQALARLP----EQPCRILDLGTGTGAIALALASER-PDCEIIAVDRMPDAVSLAQRNAQHLAIKNIHILQS 166 (276)
T ss_dssp CTTHHHHHHHHHHHSC----SSCCEEEEETCTTSHHHHHHHHHC-TTSEEEEECSSHHHHHHHHHHHHHHTCCSEEEECC
T ss_pred CchHHHHHHHHHHhcc----cCCCEEEEecCCccHHHHHHHHhC-CCCEEEEEECCHHHHHHHHHHHHHcCCCceEEEEc
Confidence 4556677777765332 567899999999999999999876 5679999999996666655555432 47999999
Q ss_pred cCCCCcccccCCCcEeEEEEeCCC----------------------------hhHHHHHHHHHhccCCCCcEEEEEEccc
Q 021911 200 DARHPAKYRMLVGMVDVIFSDVAQ----------------------------PDQARILALNASYFLKAGGHFVISIKAN 251 (305)
Q Consensus 200 D~~~~~~~~~~~~~fD~V~~d~~~----------------------------~~~~~~l~~~a~~~LkpGG~lv~s~~~~ 251 (305)
|+.+... ..+||+|++++|. .....++. ++.++|||||+|++.+..
T Consensus 167 d~~~~~~----~~~fD~Iv~npPy~~~~~~~l~~~v~~~~p~~al~~~~~g~~~~~~~l~-~~~~~LkpgG~l~~~~~~- 240 (276)
T 2b3t_A 167 DWFSALA----GQQFAMIVSNPPYIDEQDPHLQQGDVRFEPLTALVAADSGMADIVHIIE-QSRNALVSGGFLLLEHGW- 240 (276)
T ss_dssp STTGGGT----TCCEEEEEECCCCBCTTCHHHHSSGGGSSCSTTTBCHHHHTHHHHHHHH-HHGGGEEEEEEEEEECCS-
T ss_pred chhhhcc----cCCccEEEECCCCCCccccccChhhhhcCcHHHHcCCCcHHHHHHHHHH-HHHHhcCCCCEEEEEECc-
Confidence 9876431 4689999999873 12345555 899999999999998621
Q ss_pred ccCCCCchhhhHHHHHHHHHHCCCcEeEEe
Q 021911 252 CIDSTVPAEAVFQSEVKKLQQDQFKPFEQV 281 (305)
Q Consensus 252 ~i~~~~~~~~v~~~~~~~l~~~Gf~~~e~~ 281 (305)
.... ...+.+++.||+.++..
T Consensus 241 -----~~~~----~~~~~l~~~Gf~~v~~~ 261 (276)
T 2b3t_A 241 -----QQGE----AVRQAFILAGYHDVETC 261 (276)
T ss_dssp -----SCHH----HHHHHHHHTTCTTCCEE
T ss_pred -----hHHH----HHHHHHHHCCCcEEEEE
Confidence 1111 22355678899876543
|
| >3dou_A Ribosomal RNA large subunit methyltransferase J; cell division, structural genomics, protein structure initiative, PSI; HET: SAM; 1.45A {Thermoplasma volcanium} SCOP: c.66.1.0 | Back alignment and structure |
|---|
Probab=99.57 E-value=1.5e-14 Score=123.41 Aligned_cols=155 Identities=14% Similarity=0.151 Sum_probs=101.9
Q ss_pred hhhHHHHHHHccccccC-CCCCCEEEEEecCCCccHHHHHhhhCCCcEEEEEeCChHHHHHHHHHHHcCCCeEEEEccCC
Q 021911 124 FRSKLAAAVLGGVDNIW-IKPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKRTNVIPIIEDAR 202 (305)
Q Consensus 124 ~~s~l~a~ll~~l~~~~-~~~g~~VLDlG~G~G~~t~~la~~~~~~~~V~avD~s~~~~~~l~~~a~~~~nI~~~~~D~~ 202 (305)
|++..+-.+++.++++. ++++.+|||||||+|.++..+++. .++|++||+++. ...+++.+++.|++
T Consensus 5 yr~Ra~~KL~ei~~~~~~~~~g~~VLDlG~G~G~~s~~la~~---~~~V~gvD~~~~---------~~~~~v~~~~~D~~ 72 (191)
T 3dou_A 5 LRSRAAFKLEFLLDRYRVVRKGDAVIEIGSSPGGWTQVLNSL---ARKIISIDLQEM---------EEIAGVRFIRCDIF 72 (191)
T ss_dssp TTSHHHHHHHHHHHHHCCSCTTCEEEEESCTTCHHHHHHTTT---CSEEEEEESSCC---------CCCTTCEEEECCTT
T ss_pred CCCcHHHHHHHHHHHcCCCCCCCEEEEEeecCCHHHHHHHHc---CCcEEEEecccc---------ccCCCeEEEEcccc
Confidence 35666666665555443 578899999999999999999987 469999999982 12368999999998
Q ss_pred CCcccc----cCC----CcEeEEEEeCCCh--------------hHHHHHHHHHhccCCCCcEEEEEEcccccCCCCchh
Q 021911 203 HPAKYR----MLV----GMVDVIFSDVAQP--------------DQARILALNASYFLKAGGHFVISIKANCIDSTVPAE 260 (305)
Q Consensus 203 ~~~~~~----~~~----~~fD~V~~d~~~~--------------~~~~~l~~~a~~~LkpGG~lv~s~~~~~i~~~~~~~ 260 (305)
+..... ... ++||+|++|++.. .+..++. .+.++|||||.|++.+.. .. .
T Consensus 73 ~~~~~~~~~~~~~~~~~~~~D~Vlsd~~~~~~g~~~~d~~~~~~l~~~~l~-~a~~~LkpGG~lv~k~~~-----~~-~- 144 (191)
T 3dou_A 73 KETIFDDIDRALREEGIEKVDDVVSDAMAKVSGIPSRDHAVSYQIGQRVME-IAVRYLRNGGNVLLKQFQ-----GD-M- 144 (191)
T ss_dssp SSSHHHHHHHHHHHHTCSSEEEEEECCCCCCCSCHHHHHHHHHHHHHHHHH-HHHHHEEEEEEEEEEEEC-----ST-H-
T ss_pred CHHHHHHHHHHhhcccCCcceEEecCCCcCCCCCcccCHHHHHHHHHHHHH-HHHHHccCCCEEEEEEcC-----CC-C-
Confidence 764211 011 4899999998621 1334555 789999999999988721 11 1
Q ss_pred hhHHHHHHHHHHCCCcEeEEeecCC--CCCceEEEEEEEcCCC
Q 021911 261 AVFQSEVKKLQQDQFKPFEQVTLEP--FERDHACVVGGYRMPK 301 (305)
Q Consensus 261 ~v~~~~~~~l~~~Gf~~~e~~~l~p--~~~~~~~vv~~~~~~~ 301 (305)
+......|+. .|+.++...-.. -+....++||+..+..
T Consensus 145 --~~~~~~~l~~-~F~~v~~~kP~asR~~s~E~y~v~~~~~~~ 184 (191)
T 3dou_A 145 --TNDFIAIWRK-NFSSYKISKPPASRGSSSEIYIMFFGFKAE 184 (191)
T ss_dssp --HHHHHHHHGG-GEEEEEEECC------CCEEEEEEEEECCC
T ss_pred --HHHHHHHHHH-hcCEEEEECCCCccCCCceEEEEEeeeccc
Confidence 1122344443 366555432111 2356777888776653
|
| >3g5l_A Putative S-adenosylmethionine dependent methyltransferase; structural genomics, PSI-2, protein structure initiative; 2.35A {Listeria monocytogenes str} | Back alignment and structure |
|---|
Probab=99.56 E-value=9.7e-14 Score=122.36 Aligned_cols=103 Identities=18% Similarity=0.124 Sum_probs=80.7
Q ss_pred CCCCCCEEEEEecCCCccHHHHHhhhCCCcEEEEEeCChHHHHHHHHHHHcCCCeEEEEccCCCCcccccCCCcEeEEEE
Q 021911 140 WIKPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKRTNVIPIIEDARHPAKYRMLVGMVDVIFS 219 (305)
Q Consensus 140 ~~~~g~~VLDlG~G~G~~t~~la~~~~~~~~V~avD~s~~~~~~l~~~a~~~~nI~~~~~D~~~~~~~~~~~~~fD~V~~ 219 (305)
...++.+|||+|||+|.++..+++.. ..+|+++|+|+.+++.+.+.+. ..++.+++.|+...+ ....+||+|++
T Consensus 41 ~~~~~~~vLD~GcG~G~~~~~l~~~~--~~~v~~vD~s~~~~~~a~~~~~-~~~~~~~~~d~~~~~---~~~~~fD~v~~ 114 (253)
T 3g5l_A 41 PDFNQKTVLDLGCGFGWHCIYAAEHG--AKKVLGIDLSERMLTEAKRKTT-SPVVCYEQKAIEDIA---IEPDAYNVVLS 114 (253)
T ss_dssp CCCTTCEEEEETCTTCHHHHHHHHTT--CSEEEEEESCHHHHHHHHHHCC-CTTEEEEECCGGGCC---CCTTCEEEEEE
T ss_pred hccCCCEEEEECCCCCHHHHHHHHcC--CCEEEEEECCHHHHHHHHHhhc-cCCeEEEEcchhhCC---CCCCCeEEEEE
Confidence 34578999999999999999999872 2389999999944443333332 368999999997654 23579999999
Q ss_pred eCC---ChhHHHHHHHHHhccCCCCcEEEEEEc
Q 021911 220 DVA---QPDQARILALNASYFLKAGGHFVISIK 249 (305)
Q Consensus 220 d~~---~~~~~~~l~~~a~~~LkpGG~lv~s~~ 249 (305)
... .++...++. ++.++|||||+|++++.
T Consensus 115 ~~~l~~~~~~~~~l~-~~~~~LkpgG~l~~~~~ 146 (253)
T 3g5l_A 115 SLALHYIASFDDICK-KVYINLKSSGSFIFSVE 146 (253)
T ss_dssp ESCGGGCSCHHHHHH-HHHHHEEEEEEEEEEEE
T ss_pred chhhhhhhhHHHHHH-HHHHHcCCCcEEEEEeC
Confidence 776 456777787 99999999999999863
|
| >2fca_A TRNA (guanine-N(7)-)-methyltransferase; 2.10A {Bacillus subtilis} SCOP: c.66.1.53 | Back alignment and structure |
|---|
Probab=99.56 E-value=2.6e-14 Score=123.67 Aligned_cols=127 Identities=15% Similarity=0.161 Sum_probs=95.4
Q ss_pred CCCCEEEEEecCCCccHHHHHhhhCCCcEEEEEeCChHHHHHHHHHHHcC--CCeEEEEccCCCCcccccCCCcEeEEEE
Q 021911 142 KPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKR--TNVIPIIEDARHPAKYRMLVGMVDVIFS 219 (305)
Q Consensus 142 ~~g~~VLDlG~G~G~~t~~la~~~~~~~~V~avD~s~~~~~~l~~~a~~~--~nI~~~~~D~~~~~~~~~~~~~fD~V~~ 219 (305)
.++.+|||||||+|.++..+|... +..+|++||+|+.++..+.+.++.. +||.+++.|+...... ....+||.|++
T Consensus 37 ~~~~~vLDiGcG~G~~~~~la~~~-p~~~v~giD~s~~~l~~a~~~~~~~~~~nv~~~~~d~~~l~~~-~~~~~~d~v~~ 114 (213)
T 2fca_A 37 NDNPIHIEVGTGKGQFISGMAKQN-PDINYIGIELFKSVIVTAVQKVKDSEAQNVKLLNIDADTLTDV-FEPGEVKRVYL 114 (213)
T ss_dssp SCCCEEEEECCTTSHHHHHHHHHC-TTSEEEEECSCHHHHHHHHHHHHHSCCSSEEEECCCGGGHHHH-CCTTSCCEEEE
T ss_pred CCCceEEEEecCCCHHHHHHHHHC-CCCCEEEEEechHHHHHHHHHHHHcCCCCEEEEeCCHHHHHhh-cCcCCcCEEEE
Confidence 467899999999999999999985 6679999999997776666665544 6899999999875321 23568999999
Q ss_pred eCCChh-----------HHHHHHHHHhccCCCCcEEEEEEcccccCCCCchhhhHHHHHHHHHHCCCcEeEE
Q 021911 220 DVAQPD-----------QARILALNASYFLKAGGHFVISIKANCIDSTVPAEAVFQSEVKKLQQDQFKPFEQ 280 (305)
Q Consensus 220 d~~~~~-----------~~~~l~~~a~~~LkpGG~lv~s~~~~~i~~~~~~~~v~~~~~~~l~~~Gf~~~e~ 280 (305)
+.+.|. +..++. ++.++|||||.|++++. ....+....+.+.+.+|+..+.
T Consensus 115 ~~~~p~~~~~~~~~rl~~~~~l~-~~~~~LkpgG~l~~~td---------~~~~~~~~~~~~~~~g~~~~~~ 176 (213)
T 2fca_A 115 NFSDPWPKKRHEKRRLTYSHFLK-KYEEVMGKGGSIHFKTD---------NRGLFEYSLKSFSEYGLLLTYV 176 (213)
T ss_dssp ESCCCCCSGGGGGGSTTSHHHHH-HHHHHHTTSCEEEEEES---------CHHHHHHHHHHHHHHTCEEEEE
T ss_pred ECCCCCcCccccccccCcHHHHH-HHHHHcCCCCEEEEEeC---------CHHHHHHHHHHHHHCCCccccc
Confidence 877542 355666 99999999999999871 1223333356666778876654
|
| >1xtp_A LMAJ004091AAA; SGPP, structural genomics, PSI, protein structure initiative dependent methyltransferase; HET: SAI; 1.94A {Leishmania major} SCOP: c.66.1.42 | Back alignment and structure |
|---|
Probab=99.56 E-value=5.8e-14 Score=123.51 Aligned_cols=147 Identities=10% Similarity=0.007 Sum_probs=102.1
Q ss_pred cCCCCCCEEEEEecCCCccHHHHHhhhCCCcEEEEEeCChHHHHHHHHHHHcCCCeEEEEccCCCCcccccCCCcEeEEE
Q 021911 139 IWIKPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKRTNVIPIIEDARHPAKYRMLVGMVDVIF 218 (305)
Q Consensus 139 ~~~~~g~~VLDlG~G~G~~t~~la~~~~~~~~V~avD~s~~~~~~l~~~a~~~~nI~~~~~D~~~~~~~~~~~~~fD~V~ 218 (305)
+...++.+|||+|||+|.++..+++.. ..+|+++|+|+.++..+.+.+....++.+++.|+...+. ...+||+|+
T Consensus 89 l~~~~~~~vLDiG~G~G~~~~~l~~~~--~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~d~~~~~~---~~~~fD~v~ 163 (254)
T 1xtp_A 89 LPGHGTSRALDCGAGIGRITKNLLTKL--YATTDLLEPVKHMLEEAKRELAGMPVGKFILASMETATL---PPNTYDLIV 163 (254)
T ss_dssp STTCCCSEEEEETCTTTHHHHHTHHHH--CSEEEEEESCHHHHHHHHHHTTTSSEEEEEESCGGGCCC---CSSCEEEEE
T ss_pred hcccCCCEEEEECCCcCHHHHHHHHhh--cCEEEEEeCCHHHHHHHHHHhccCCceEEEEccHHHCCC---CCCCeEEEE
Confidence 345678999999999999999999875 357999999995555554444433679999999876542 346899999
Q ss_pred EeCC---C--hhHHHHHHHHHhccCCCCcEEEEEEcccccC-----CCCchhhh-HHHHHHHHHHCCCcEeEEeecCCCC
Q 021911 219 SDVA---Q--PDQARILALNASYFLKAGGHFVISIKANCID-----STVPAEAV-FQSEVKKLQQDQFKPFEQVTLEPFE 287 (305)
Q Consensus 219 ~d~~---~--~~~~~~l~~~a~~~LkpGG~lv~s~~~~~i~-----~~~~~~~v-~~~~~~~l~~~Gf~~~e~~~l~p~~ 287 (305)
+... . .+...++. ++.++|||||+|++++...... ........ .....+.|+++||++++......+.
T Consensus 164 ~~~~l~~~~~~~~~~~l~-~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~~~~~~~~~~~ 242 (254)
T 1xtp_A 164 IQWTAIYLTDADFVKFFK-HCQQALTPNGYIFFKENCSTGDRFLVDKEDSSLTRSDIHYKRLFNESGVRVVKEAFQEEWP 242 (254)
T ss_dssp EESCGGGSCHHHHHHHHH-HHHHHEEEEEEEEEEEEBC--CCEEEETTTTEEEBCHHHHHHHHHHHTCCEEEEEECTTCC
T ss_pred EcchhhhCCHHHHHHHHH-HHHHhcCCCeEEEEEecCCCcccceecccCCcccCCHHHHHHHHHHCCCEEEEeeecCCCC
Confidence 9665 2 34566676 9999999999999988311100 00000001 1223456688999999988776665
Q ss_pred CceE
Q 021911 288 RDHA 291 (305)
Q Consensus 288 ~~~~ 291 (305)
...+
T Consensus 243 ~~~~ 246 (254)
T 1xtp_A 243 TDLF 246 (254)
T ss_dssp TTSC
T ss_pred chhh
Confidence 5433
|
| >3k6r_A Putative transferase PH0793; structural genomics, PSI structure initiative, midwest center for structural genomic unknown function; 2.10A {Pyrococcus horikoshii} PDB: 3a25_A* 3a26_A* | Back alignment and structure |
|---|
Probab=99.56 E-value=1.3e-13 Score=124.29 Aligned_cols=159 Identities=14% Similarity=0.028 Sum_probs=106.7
Q ss_pred cCchhhHHHHHHHccccccCCCCCCEEEEEecCCCccHHHHHhhhCCCcEEEEEeCChHHHHHHHHHHHcC---CCeEEE
Q 021911 121 WNPFRSKLAAAVLGGVDNIWIKPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKR---TNVIPI 197 (305)
Q Consensus 121 ~~~~~s~l~a~ll~~l~~~~~~~g~~VLDlG~G~G~~t~~la~~~~~~~~V~avD~s~~~~~~l~~~a~~~---~nI~~~ 197 (305)
|++..+.--..+.. ..+++++|||++||+|.+++++|.. ...+|+|+|+|+.+++.+.++++.+ .+|+++
T Consensus 108 f~~~~~~er~ri~~-----~~~~g~~VlD~~aG~G~~~i~~a~~--g~~~V~avD~np~a~~~~~~N~~~N~v~~~v~~~ 180 (278)
T 3k6r_A 108 FSPANVKERVRMAK-----VAKPDELVVDMFAGIGHLSLPIAVY--GKAKVIAIEKDPYTFKFLVENIHLNKVEDRMSAY 180 (278)
T ss_dssp CCGGGHHHHHHHHH-----HCCTTCEEEETTCTTTTTTHHHHHH--TCCEEEEECCCHHHHHHHHHHHHHTTCTTTEEEE
T ss_pred EcCCcHHHHHHHHH-----hcCCCCEEEEecCcCcHHHHHHHHh--cCCeEEEEECCHHHHHHHHHHHHHcCCCCcEEEE
Confidence 55544444444443 3678999999999999999999987 4568999999998888888887766 569999
Q ss_pred EccCCCCcccccCCCcEeEEEEeCCChhHHHHHHHHHhccCCCCcEEEEEEcccccCCCCchhhhHHHHHHHHHHCCCcE
Q 021911 198 IEDARHPAKYRMLVGMVDVIFSDVAQPDQARILALNASYFLKAGGHFVISIKANCIDSTVPAEAVFQSEVKKLQQDQFKP 277 (305)
Q Consensus 198 ~~D~~~~~~~~~~~~~fD~V~~d~~~~~~~~~l~~~a~~~LkpGG~lv~s~~~~~i~~~~~~~~v~~~~~~~l~~~Gf~~ 277 (305)
+.|++++.. ...||.|++++|... .+.+. .+.++||+||+|.+......... ....+....+..++.|+++
T Consensus 181 ~~D~~~~~~----~~~~D~Vi~~~p~~~-~~~l~-~a~~~lk~gG~ih~~~~~~e~~~---~~~~~e~i~~~~~~~g~~v 251 (278)
T 3k6r_A 181 NMDNRDFPG----ENIADRILMGYVVRT-HEFIP-KALSIAKDGAIIHYHNTVPEKLM---PREPFETFKRITKEYGYDV 251 (278)
T ss_dssp CSCTTTCCC----CSCEEEEEECCCSSG-GGGHH-HHHHHEEEEEEEEEEEEEEGGGT---TTTTHHHHHHHHHHTTCEE
T ss_pred eCcHHHhcc----ccCCCEEEECCCCcH-HHHHH-HHHHHcCCCCEEEEEeeeccccc---chhHHHHHHHHHHHcCCcE
Confidence 999988753 368999999987433 23454 78889999999977542111111 1111122223346778875
Q ss_pred eE-----EeecCCCCCceEEEEEE
Q 021911 278 FE-----QVTLEPFERDHACVVGG 296 (305)
Q Consensus 278 ~e-----~~~l~p~~~~~~~vv~~ 296 (305)
.. +..+.|. ..|+++-.+
T Consensus 252 ~~~~~~~Vk~yaP~-~~hvv~D~~ 274 (278)
T 3k6r_A 252 EKLNELKIKRYAPG-VWHVVLDLR 274 (278)
T ss_dssp EEEEEEEEEEETTT-EEEEEEEEE
T ss_pred EEEEEEEEEeECcC-ccEEEEEEE
Confidence 42 2234554 345555443
|
| >2a14_A Indolethylamine N-methyltransferase; SGC,INMT, structural genomics, structural genomics consortium; HET: SAH; 1.70A {Homo sapiens} SCOP: c.66.1.15 | Back alignment and structure |
|---|
Probab=99.56 E-value=2.6e-14 Score=127.48 Aligned_cols=158 Identities=15% Similarity=0.159 Sum_probs=101.0
Q ss_pred CCCCCCEEEEEecCCCccHHHHHhhhCCCcEEEEEeCChHHHHHHHHHHHcC----------------------------
Q 021911 140 WIKPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKR---------------------------- 191 (305)
Q Consensus 140 ~~~~g~~VLDlG~G~G~~t~~la~~~~~~~~V~avD~s~~~~~~l~~~a~~~---------------------------- 191 (305)
...++.+|||||||+|.++..++.. ...+|+++|+|+.+++.+.+.+++.
T Consensus 52 ~~~~g~~vLDiGCG~G~~~~~~~~~--~~~~v~g~D~s~~~l~~a~~~~~~~~~~~d~s~~~~~~~~~~~~~~~~~~~~~ 129 (263)
T 2a14_A 52 GGLQGDTLIDIGSGPTIYQVLAACD--SFQDITLSDFTDRNREELEKWLKKEPGAYDWTPAVKFACELEGNSGRWEEKEE 129 (263)
T ss_dssp TSCCEEEEEESSCTTCCGGGTTGGG--TEEEEEEEESCHHHHHHHHHHHHTCTTCCCCHHHHHHHHHHTTCGGGHHHHHH
T ss_pred CCCCCceEEEeCCCccHHHHHHHHh--hhcceeeccccHHHHHHHHHHHhcCCCcccchHHHHHHHhcCCCCcchhhHHH
Confidence 3567889999999999887776654 2237999999997766655544322
Q ss_pred ---CCeE-EEEccCCCCcccc-cCCCcEeEEEEeCC------C-hhHHHHHHHHHhccCCCCcEEEEEEcccccC---CC
Q 021911 192 ---TNVI-PIIEDARHPAKYR-MLVGMVDVIFSDVA------Q-PDQARILALNASYFLKAGGHFVISIKANCID---ST 256 (305)
Q Consensus 192 ---~nI~-~~~~D~~~~~~~~-~~~~~fD~V~~d~~------~-~~~~~~l~~~a~~~LkpGG~lv~s~~~~~i~---~~ 256 (305)
.+|. ++++|+....+.. ...++||+|++... . ++...++. +++++|||||+|++++...... ..
T Consensus 130 ~~~~~i~~~~~~D~~~~~~~~~~~~~~fD~V~~~~~l~~i~~~~~~~~~~l~-~i~r~LKPGG~li~~~~~~~~~~~~g~ 208 (263)
T 2a14_A 130 KLRAAVKRVLKCDVHLGNPLAPAVLPLADCVLTLLAMECACCSLDAYRAALC-NLASLLKPGGHLVTTVTLRLPSYMVGK 208 (263)
T ss_dssp HHHHHEEEEEECCTTSSSTTTTCCCCCEEEEEEESCHHHHCSSHHHHHHHHH-HHHTTEEEEEEEEEEEESSCCEEEETT
T ss_pred HHHhhhheEEeccccCCCCCCccccCCCCEeeehHHHHHhcCCHHHHHHHHH-HHHHHcCCCcEEEEEEeecCccceeCC
Confidence 1244 8889998753321 12468999999754 1 34556676 9999999999999997321100 00
Q ss_pred C-chh-hhHH-HHHHHHHHCCCcEeEEeecC-CC------CCceEEEEEEEcCC
Q 021911 257 V-PAE-AVFQ-SEVKKLQQDQFKPFEQVTLE-PF------ERDHACVVGGYRMP 300 (305)
Q Consensus 257 ~-~~~-~v~~-~~~~~l~~~Gf~~~e~~~l~-p~------~~~~~~vv~~~~~~ 300 (305)
. ... ..-. ...+.|+++||++++..... .+ ....++++++|.+.
T Consensus 209 ~~~~~~~~~~~~l~~~l~~aGF~i~~~~~~~~~~~~~~~~~~~~~~~~a~K~~~ 262 (263)
T 2a14_A 209 REFSCVALEKGEVEQAVLDAGFDIEQLLHSPQSYSVTNAANNGVCCIVARKKPG 262 (263)
T ss_dssp EEEECCCCCHHHHHHHHHHTTEEEEEEEEECCCCCTTTCCCCCEEEEEEEECC-
T ss_pred eEeeccccCHHHHHHHHHHCCCEEEEEeecccccccccCCCCceEEEEEEecCC
Confidence 0 000 0112 22466788999998876542 11 12456788888654
|
| >3vc1_A Geranyl diphosphate 2-C-methyltransferase; rossmann fold, methyltransferase fold, SAM-dependent methyltransferase; HET: SAH GST GOL; 1.82A {Streptomyces coelicolor} PDB: 3vc2_A* 4f84_A* 4f85_A 4f86_A* | Back alignment and structure |
|---|
Probab=99.56 E-value=6.8e-14 Score=127.71 Aligned_cols=138 Identities=15% Similarity=0.158 Sum_probs=100.5
Q ss_pred CCCCCEEEEEecCCCccHHHHHhhhCCCcEEEEEeCChHHHHHHHHHHHcC---CCeEEEEccCCCCcccccCCCcEeEE
Q 021911 141 IKPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKR---TNVIPIIEDARHPAKYRMLVGMVDVI 217 (305)
Q Consensus 141 ~~~g~~VLDlG~G~G~~t~~la~~~~~~~~V~avD~s~~~~~~l~~~a~~~---~nI~~~~~D~~~~~~~~~~~~~fD~V 217 (305)
+.++.+|||+|||+|.++..+++.+ ..+|+++|+|+.+++.+.+.++.. .++.+++.|+.+.+ ...++||+|
T Consensus 115 ~~~~~~vLDiGcG~G~~~~~la~~~--~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~---~~~~~fD~V 189 (312)
T 3vc1_A 115 AGPDDTLVDAGCGRGGSMVMAHRRF--GSRVEGVTLSAAQADFGNRRARELRIDDHVRSRVCNMLDTP---FDKGAVTAS 189 (312)
T ss_dssp CCTTCEEEEESCTTSHHHHHHHHHH--CCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCTTSCC---CCTTCEEEE
T ss_pred CCCCCEEEEecCCCCHHHHHHHHHc--CCEEEEEeCCHHHHHHHHHHHHHcCCCCceEEEECChhcCC---CCCCCEeEE
Confidence 6788999999999999999999986 358999999997666666555544 47999999998764 235799999
Q ss_pred EEeCC--ChhHHHHHHHHHhccCCCCcEEEEEEcccccCC-CCchhhh------------HHHHHHHHHHCCCcEeEEee
Q 021911 218 FSDVA--QPDQARILALNASYFLKAGGHFVISIKANCIDS-TVPAEAV------------FQSEVKKLQQDQFKPFEQVT 282 (305)
Q Consensus 218 ~~d~~--~~~~~~~l~~~a~~~LkpGG~lv~s~~~~~i~~-~~~~~~v------------~~~~~~~l~~~Gf~~~e~~~ 282 (305)
++... ..++..++. ++.++|||||+|++++....... ....... ..+..+.|+++||+++++..
T Consensus 190 ~~~~~l~~~~~~~~l~-~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~l~~aGf~~~~~~~ 268 (312)
T 3vc1_A 190 WNNESTMYVDLHDLFS-EHSRFLKVGGRYVTITGCWNPRYGQPSKWVSQINAHFECNIHSRREYLRAMADNRLVPHTIVD 268 (312)
T ss_dssp EEESCGGGSCHHHHHH-HHHHHEEEEEEEEEEEEEECTTTCSCCHHHHHHHHHHTCCCCBHHHHHHHHHTTTEEEEEEEE
T ss_pred EECCchhhCCHHHHHH-HHHHHcCCCcEEEEEEccccccccchhHHHHHHHhhhcCCCCCHHHHHHHHHHCCCEEEEEEe
Confidence 99655 335677777 99999999999999873221111 1111111 11224566889999988876
Q ss_pred cC
Q 021911 283 LE 284 (305)
Q Consensus 283 l~ 284 (305)
+.
T Consensus 269 ~~ 270 (312)
T 3vc1_A 269 LT 270 (312)
T ss_dssp CH
T ss_pred CC
Confidence 54
|
| >3e23_A Uncharacterized protein RPA2492; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAM; 1.60A {Rhodopseudomonas palustris} | Back alignment and structure |
|---|
Probab=99.56 E-value=2.6e-14 Score=122.63 Aligned_cols=151 Identities=17% Similarity=0.109 Sum_probs=101.4
Q ss_pred CCCCCCEEEEEecCCCccHHHHHhhhCCCcEEEEEeCChHHHHHHHHHHHcCCCeEEEEccCCCCcccccCCCcEeEEEE
Q 021911 140 WIKPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKRTNVIPIIEDARHPAKYRMLVGMVDVIFS 219 (305)
Q Consensus 140 ~~~~g~~VLDlG~G~G~~t~~la~~~~~~~~V~avD~s~~~~~~l~~~a~~~~nI~~~~~D~~~~~~~~~~~~~fD~V~~ 219 (305)
.+.++.+|||+|||+|.++..+++. ..+|+++|+|+ .+++.++++.++.+++.|+...+ ...+||+|++
T Consensus 40 ~~~~~~~vLDiGcG~G~~~~~l~~~---~~~v~~vD~s~----~~~~~a~~~~~~~~~~~d~~~~~----~~~~fD~v~~ 108 (211)
T 3e23_A 40 ELPAGAKILELGCGAGYQAEAMLAA---GFDVDATDGSP----ELAAEASRRLGRPVRTMLFHQLD----AIDAYDAVWA 108 (211)
T ss_dssp TSCTTCEEEESSCTTSHHHHHHHHT---TCEEEEEESCH----HHHHHHHHHHTSCCEECCGGGCC----CCSCEEEEEE
T ss_pred hcCCCCcEEEECCCCCHHHHHHHHc---CCeEEEECCCH----HHHHHHHHhcCCceEEeeeccCC----CCCcEEEEEe
Confidence 4567899999999999999999987 34899999999 55555555446888889987765 3579999999
Q ss_pred eCC---Ch--hHHHHHHHHHhccCCCCcEEEEEEcccccCCCC---chh-h-hHHHHHHHHHHCC-CcEeEEeecCC--C
Q 021911 220 DVA---QP--DQARILALNASYFLKAGGHFVISIKANCIDSTV---PAE-A-VFQSEVKKLQQDQ-FKPFEQVTLEP--F 286 (305)
Q Consensus 220 d~~---~~--~~~~~l~~~a~~~LkpGG~lv~s~~~~~i~~~~---~~~-~-v~~~~~~~l~~~G-f~~~e~~~l~p--~ 286 (305)
... .+ +...++. ++.++|||||+|++++......... ... . -.....+.++++| |++++...... +
T Consensus 109 ~~~l~~~~~~~~~~~l~-~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aG~f~~~~~~~~~~~~~ 187 (211)
T 3e23_A 109 HACLLHVPRDELADVLK-LIWRALKPGGLFYASYKSGEGEGRDKLARYYNYPSEEWLRARYAEAGTWASVAVESSEGKGF 187 (211)
T ss_dssp CSCGGGSCHHHHHHHHH-HHHHHEEEEEEEEEEEECCSSCEECTTSCEECCCCHHHHHHHHHHHCCCSEEEEEEEEEECT
T ss_pred cCchhhcCHHHHHHHHH-HHHHhcCCCcEEEEEEcCCCcccccccchhccCCCHHHHHHHHHhCCCcEEEEEEeccCCCC
Confidence 765 22 5566776 9999999999999987432211000 000 0 1122345668899 99988764332 3
Q ss_pred CC--ceEEEEEEEcCCCC
Q 021911 287 ER--DHACVVGGYRMPKK 302 (305)
Q Consensus 287 ~~--~~~~vv~~~~~~~~ 302 (305)
.+ .+.+++...+.+..
T Consensus 188 ~~~~~~wl~~~~~~~~~~ 205 (211)
T 3e23_A 188 DQELAQFLHVSVRKPELE 205 (211)
T ss_dssp TSCEEEEEEEEEECCCC-
T ss_pred CCCCceEEEEEEecCccc
Confidence 32 33444444444433
|
| >4hg2_A Methyltransferase type 11; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MES; 1.60A {Anaeromyxobacter dehalogenans} | Back alignment and structure |
|---|
Probab=99.56 E-value=1.6e-14 Score=128.95 Aligned_cols=115 Identities=20% Similarity=0.214 Sum_probs=88.4
Q ss_pred eeecCc-hhhHHHHHHHccccccCCCCCCEEEEEecCCCccHHHHHhhhCCCcEEEEEeCChHHHHHHHHHHHcCCCeEE
Q 021911 118 YRIWNP-FRSKLAAAVLGGVDNIWIKPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKRTNVIP 196 (305)
Q Consensus 118 ~~~~~~-~~s~l~a~ll~~l~~~~~~~g~~VLDlG~G~G~~t~~la~~~~~~~~V~avD~s~~~~~~l~~~a~~~~nI~~ 196 (305)
|..+.| |...+...|.. ......+|||||||+|.++..|++.. .+|++||+|+ .|++.+++.++|.+
T Consensus 18 Y~~~Rp~yp~~l~~~l~~-----~~~~~~~vLDvGcGtG~~~~~l~~~~---~~v~gvD~s~----~ml~~a~~~~~v~~ 85 (257)
T 4hg2_A 18 YRAFRPRYPRALFRWLGE-----VAPARGDALDCGCGSGQASLGLAEFF---ERVHAVDPGE----AQIRQALRHPRVTY 85 (257)
T ss_dssp --CCCCCCCHHHHHHHHH-----HSSCSSEEEEESCTTTTTHHHHHTTC---SEEEEEESCH----HHHHTCCCCTTEEE
T ss_pred HHHHCCCcHHHHHHHHHH-----hcCCCCCEEEEcCCCCHHHHHHHHhC---CEEEEEeCcH----HhhhhhhhcCCcee
Confidence 444433 33455555543 23446799999999999999999874 4899999999 78888887799999
Q ss_pred EEccCCCCcccccCCCcEeEEEEeCC--ChhHHHHHHHHHhccCCCCcEEEEEE
Q 021911 197 IIEDARHPAKYRMLVGMVDVIFSDVA--QPDQARILALNASYFLKAGGHFVISI 248 (305)
Q Consensus 197 ~~~D~~~~~~~~~~~~~fD~V~~d~~--~~~~~~~l~~~a~~~LkpGG~lv~s~ 248 (305)
++.|+.+.+ ..+++||+|++..+ ..+..+.+. +++++|||||+|++..
T Consensus 86 ~~~~~e~~~---~~~~sfD~v~~~~~~h~~~~~~~~~-e~~rvLkpgG~l~~~~ 135 (257)
T 4hg2_A 86 AVAPAEDTG---LPPASVDVAIAAQAMHWFDLDRFWA-ELRRVARPGAVFAAVT 135 (257)
T ss_dssp EECCTTCCC---CCSSCEEEEEECSCCTTCCHHHHHH-HHHHHEEEEEEEEEEE
T ss_pred ehhhhhhhc---ccCCcccEEEEeeehhHhhHHHHHH-HHHHHcCCCCEEEEEE
Confidence 999998765 23679999999665 345566676 9999999999999987
|
| >3ou2_A SAM-dependent methyltransferase; O-methyltransferase, SAH; HET: SAH; 1.50A {Streptomyces luridus} PDB: 3ou6_A* 3ou7_A* | Back alignment and structure |
|---|
Probab=99.56 E-value=1.1e-13 Score=118.62 Aligned_cols=98 Identities=19% Similarity=0.103 Sum_probs=79.1
Q ss_pred CCCCCCEEEEEecCCCccHHHHHhhhCCCcEEEEEeCChHHHHHHHHHHHcC--CCeEEEEccCCCCcccccCCCcEeEE
Q 021911 140 WIKPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKR--TNVIPIIEDARHPAKYRMLVGMVDVI 217 (305)
Q Consensus 140 ~~~~g~~VLDlG~G~G~~t~~la~~~~~~~~V~avD~s~~~~~~l~~~a~~~--~nI~~~~~D~~~~~~~~~~~~~fD~V 217 (305)
.+.++.+|||+|||+|.++..+++. ..+|+++|+|+ .+++.+++. +++.+++.|+.+.. ...+||+|
T Consensus 43 ~~~~~~~vLdiG~G~G~~~~~l~~~---~~~v~~~D~s~----~~~~~a~~~~~~~~~~~~~d~~~~~----~~~~~D~v 111 (218)
T 3ou2_A 43 AGNIRGDVLELASGTGYWTRHLSGL---ADRVTALDGSA----EMIAEAGRHGLDNVEFRQQDLFDWT----PDRQWDAV 111 (218)
T ss_dssp TTTSCSEEEEESCTTSHHHHHHHHH---SSEEEEEESCH----HHHHHHGGGCCTTEEEEECCTTSCC----CSSCEEEE
T ss_pred cCCCCCeEEEECCCCCHHHHHHHhc---CCeEEEEeCCH----HHHHHHHhcCCCCeEEEecccccCC----CCCceeEE
Confidence 3667789999999999999999988 35899999999 555555543 68999999998762 35799999
Q ss_pred EEeCC---Chh--HHHHHHHHHhccCCCCcEEEEEEc
Q 021911 218 FSDVA---QPD--QARILALNASYFLKAGGHFVISIK 249 (305)
Q Consensus 218 ~~d~~---~~~--~~~~l~~~a~~~LkpGG~lv~s~~ 249 (305)
++... .++ ...++. ++.++|||||.|++++.
T Consensus 112 ~~~~~l~~~~~~~~~~~l~-~~~~~L~pgG~l~~~~~ 147 (218)
T 3ou2_A 112 FFAHWLAHVPDDRFEAFWE-SVRSAVAPGGVVEFVDV 147 (218)
T ss_dssp EEESCGGGSCHHHHHHHHH-HHHHHEEEEEEEEEEEE
T ss_pred EEechhhcCCHHHHHHHHH-HHHHHcCCCeEEEEEeC
Confidence 99765 223 366666 99999999999999874
|
| >1jsx_A Glucose-inhibited division protein B; methyltransferase fold, structural genomics, PSI, protein structure initiative; 2.40A {Escherichia coli} SCOP: c.66.1.20 | Back alignment and structure |
|---|
Probab=99.55 E-value=1e-13 Score=118.39 Aligned_cols=137 Identities=15% Similarity=0.174 Sum_probs=97.4
Q ss_pred CCCEEEEEecCCCccHHHHHhhhCCCcEEEEEeCChHHHHHHHHHHHcC--CCeEEEEccCCCCcccccCCCcEeEEEEe
Q 021911 143 PGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKR--TNVIPIIEDARHPAKYRMLVGMVDVIFSD 220 (305)
Q Consensus 143 ~g~~VLDlG~G~G~~t~~la~~~~~~~~V~avD~s~~~~~~l~~~a~~~--~nI~~~~~D~~~~~~~~~~~~~fD~V~~d 220 (305)
++.+|||+|||+|..+..++... +..+|+++|+|+.++..+.+.++.. +++.+++.|+.+..+ ..+||+|+++
T Consensus 65 ~~~~vLDiG~G~G~~~~~l~~~~-~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~----~~~~D~i~~~ 139 (207)
T 1jsx_A 65 QGERFIDVGTGPGLPGIPLSIVR-PEAHFTLLDSLGKRVRFLRQVQHELKLENIEPVQSRVEEFPS----EPPFDGVISR 139 (207)
T ss_dssp CSSEEEEETCTTTTTHHHHHHHC-TTSEEEEEESCHHHHHHHHHHHHHTTCSSEEEEECCTTTSCC----CSCEEEEECS
T ss_pred CCCeEEEECCCCCHHHHHHHHHC-CCCEEEEEeCCHHHHHHHHHHHHHcCCCCeEEEecchhhCCc----cCCcCEEEEe
Confidence 47899999999999999999875 5679999999997666666555544 469999999987642 3689999986
Q ss_pred CCChhHHHHHHHHHhccCCCCcEEEEEEcccccCCCCchhhhHHHHHHHHHHCCCcEeEEe--ecCCCCCceEEEEEEEc
Q 021911 221 VAQPDQARILALNASYFLKAGGHFVISIKANCIDSTVPAEAVFQSEVKKLQQDQFKPFEQV--TLEPFERDHACVVGGYR 298 (305)
Q Consensus 221 ~~~~~~~~~l~~~a~~~LkpGG~lv~s~~~~~i~~~~~~~~v~~~~~~~l~~~Gf~~~e~~--~l~p~~~~~~~vv~~~~ 298 (305)
.. .+...++. ++.++|||||+|++.... .. .+++..+.+ +|++++.. .+........+++.+++
T Consensus 140 ~~-~~~~~~l~-~~~~~L~~gG~l~~~~~~------~~-----~~~~~~~~~-g~~~~~~~~~~~~~~~~~~~~~~~~k~ 205 (207)
T 1jsx_A 140 AF-ASLNDMVS-WCHHLPGEQGRFYALKGQ------MP-----EDEIALLPE-EYQVESVVKLQVPALDGERHLVVIKAN 205 (207)
T ss_dssp CS-SSHHHHHH-HHTTSEEEEEEEEEEESS------CC-----HHHHHTSCT-TEEEEEEEEEECC--CCEEEEEEEEEC
T ss_pred cc-CCHHHHHH-HHHHhcCCCcEEEEEeCC------Cc-----hHHHHHHhc-CCceeeeeeeccCCCCCceEEEEEEec
Confidence 54 44556776 999999999999998611 11 122333333 88877654 33334455566666554
|
| >3mb5_A SAM-dependent methyltransferase; RNA methyltransferase, M1A, TRMI, intermolecular contacts, R specificity, tetramer, disulfide bond; HET: SAM; 1.60A {Pyrococcus abyssi} PDB: 3lga_A* 3lhd_C* | Back alignment and structure |
|---|
Probab=99.55 E-value=4.3e-14 Score=124.91 Aligned_cols=127 Identities=26% Similarity=0.350 Sum_probs=97.9
Q ss_pred CCCCCCEEEEEecCCCccHHHHHhhhCCCcEEEEEeCChHHHHHHHHHHHcC--CC-eEEEEccCCCCcccccCCCcEeE
Q 021911 140 WIKPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKR--TN-VIPIIEDARHPAKYRMLVGMVDV 216 (305)
Q Consensus 140 ~~~~g~~VLDlG~G~G~~t~~la~~~~~~~~V~avD~s~~~~~~l~~~a~~~--~n-I~~~~~D~~~~~~~~~~~~~fD~ 216 (305)
.+.++.+|||+|||+|.++.++++.+++..+|+++|+|+.+++.+.+.++.. ++ +.+++.|+.+.. ...+||+
T Consensus 90 ~~~~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~----~~~~~D~ 165 (255)
T 3mb5_A 90 GISPGDFIVEAGVGSGALTLFLANIVGPEGRVVSYEIREDFAKLAWENIKWAGFDDRVTIKLKDIYEGI----EEENVDH 165 (255)
T ss_dssp TCCTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHHTCTTTEEEECSCGGGCC----CCCSEEE
T ss_pred CCCCCCEEEEecCCchHHHHHHHHHhCCCeEEEEEecCHHHHHHHHHHHHHcCCCCceEEEECchhhcc----CCCCcCE
Confidence 5788999999999999999999999877889999999996666665555432 34 999999997542 2468999
Q ss_pred EEEeCCChhHHHHHHHHHhccCCCCcEEEEEEcccccCCCCchhhhHHHHHHHHHHCC--CcEeEEee
Q 021911 217 IFSDVAQPDQARILALNASYFLKAGGHFVISIKANCIDSTVPAEAVFQSEVKKLQQDQ--FKPFEQVT 282 (305)
Q Consensus 217 V~~d~~~~~~~~~l~~~a~~~LkpGG~lv~s~~~~~i~~~~~~~~v~~~~~~~l~~~G--f~~~e~~~ 282 (305)
|+++++.+. .++. ++.++|||||+|++.++ + ........+.+++.+ |..++...
T Consensus 166 v~~~~~~~~--~~l~-~~~~~L~~gG~l~~~~~--~-------~~~~~~~~~~l~~~g~~f~~~~~~e 221 (255)
T 3mb5_A 166 VILDLPQPE--RVVE-HAAKALKPGGFFVAYTP--C-------SNQVMRLHEKLREFKDYFMKPRTIN 221 (255)
T ss_dssp EEECSSCGG--GGHH-HHHHHEEEEEEEEEEES--S-------HHHHHHHHHHHHHTGGGBSCCEEEC
T ss_pred EEECCCCHH--HHHH-HHHHHcCCCCEEEEEEC--C-------HHHHHHHHHHHHHcCCCccccEEEE
Confidence 999988664 4465 88999999999999862 1 112234456778888 88776654
|
| >3p9n_A Possible methyltransferase (methylase); RV2966C, adoMet binding, RNA methylase, RSMD, SAM-fold, RNA methyltransferase; 1.90A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=99.55 E-value=2.6e-14 Score=120.87 Aligned_cols=124 Identities=19% Similarity=0.113 Sum_probs=90.2
Q ss_pred CchhhHHHHHHHccccccCCCCCCEEEEEecCCCccHHHHHhhhCCCcEEEEEeCChHHHHHHHHHHHcC--CCeEEEEc
Q 021911 122 NPFRSKLAAAVLGGVDNIWIKPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKR--TNVIPIIE 199 (305)
Q Consensus 122 ~~~~s~l~a~ll~~l~~~~~~~g~~VLDlG~G~G~~t~~la~~~~~~~~V~avD~s~~~~~~l~~~a~~~--~nI~~~~~ 199 (305)
.|....+...++..|......++.+|||+|||+|.++..++.. +..+|+++|+|+.+++.+.+.++.. +++++++.
T Consensus 23 rp~~~~~~~~l~~~l~~~~~~~~~~vLDlgcG~G~~~~~~~~~--~~~~v~~vD~~~~~~~~a~~~~~~~~~~~v~~~~~ 100 (189)
T 3p9n_A 23 RPTTDRVRESLFNIVTARRDLTGLAVLDLYAGSGALGLEALSR--GAASVLFVESDQRSAAVIARNIEALGLSGATLRRG 100 (189)
T ss_dssp ---CHHHHHHHHHHHHHHSCCTTCEEEEETCTTCHHHHHHHHT--TCSEEEEEECCHHHHHHHHHHHHHHTCSCEEEEES
T ss_pred ccCcHHHHHHHHHHHHhccCCCCCEEEEeCCCcCHHHHHHHHC--CCCeEEEEECCHHHHHHHHHHHHHcCCCceEEEEc
Confidence 3445566666655554333357899999999999999988875 4568999999996666665555443 58999999
Q ss_pred cCCCCcccccCCCcEeEEEEeCCC----hhHHHHHHHHHhc--cCCCCcEEEEEEc
Q 021911 200 DARHPAKYRMLVGMVDVIFSDVAQ----PDQARILALNASY--FLKAGGHFVISIK 249 (305)
Q Consensus 200 D~~~~~~~~~~~~~fD~V~~d~~~----~~~~~~l~~~a~~--~LkpGG~lv~s~~ 249 (305)
|+.+.... ....+||+|++|+|. ++..+++. .+.+ +|||||.|++.+.
T Consensus 101 d~~~~~~~-~~~~~fD~i~~~~p~~~~~~~~~~~l~-~~~~~~~L~pgG~l~~~~~ 154 (189)
T 3p9n_A 101 AVAAVVAA-GTTSPVDLVLADPPYNVDSADVDAILA-ALGTNGWTREGTVAVVERA 154 (189)
T ss_dssp CHHHHHHH-CCSSCCSEEEECCCTTSCHHHHHHHHH-HHHHSSSCCTTCEEEEEEE
T ss_pred cHHHHHhh-ccCCCccEEEECCCCCcchhhHHHHHH-HHHhcCccCCCeEEEEEec
Confidence 99775431 124789999999883 34556665 7777 9999999999873
|
| >3pfg_A N-methyltransferase; N,N-dimethyltransferase, SAM binding, DTDP-linked sugar BIND transferase; HET: SAM TLO; 1.35A {Streptomyces fradiae} PDB: 3pfh_A* 3px3_A* 3px2_A* | Back alignment and structure |
|---|
Probab=99.54 E-value=3.7e-14 Score=125.91 Aligned_cols=96 Identities=18% Similarity=0.249 Sum_probs=76.7
Q ss_pred CCCCCEEEEEecCCCccHHHHHhhhCCCcEEEEEeCChHHHHHHHHHHHcC-CCeEEEEccCCCCcccccCCCcEeEEEE
Q 021911 141 IKPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKR-TNVIPIIEDARHPAKYRMLVGMVDVIFS 219 (305)
Q Consensus 141 ~~~g~~VLDlG~G~G~~t~~la~~~~~~~~V~avD~s~~~~~~l~~~a~~~-~nI~~~~~D~~~~~~~~~~~~~fD~V~~ 219 (305)
..++.+|||+|||+|.++..+++.. .+|+++|+|+ .+++.++++ +++.+++.|+...+. ..+||+|++
T Consensus 48 ~~~~~~vLDiGcG~G~~~~~l~~~~---~~v~gvD~s~----~~~~~a~~~~~~~~~~~~d~~~~~~----~~~fD~v~~ 116 (263)
T 3pfg_A 48 SPKAASLLDVACGTGMHLRHLADSF---GTVEGLELSA----DMLAIARRRNPDAVLHHGDMRDFSL----GRRFSAVTC 116 (263)
T ss_dssp CTTCCEEEEETCTTSHHHHHHTTTS---SEEEEEESCH----HHHHHHHHHCTTSEEEECCTTTCCC----SCCEEEEEE
T ss_pred CCCCCcEEEeCCcCCHHHHHHHHcC---CeEEEEECCH----HHHHHHHhhCCCCEEEECChHHCCc----cCCcCEEEE
Confidence 3467899999999999999999872 4899999999 555555554 589999999987643 579999999
Q ss_pred eC-C---C---hhHHHHHHHHHhccCCCCcEEEEEE
Q 021911 220 DV-A---Q---PDQARILALNASYFLKAGGHFVISI 248 (305)
Q Consensus 220 d~-~---~---~~~~~~l~~~a~~~LkpGG~lv~s~ 248 (305)
.. . . .+...++. ++.++|||||+|++++
T Consensus 117 ~~~~l~~~~~~~~~~~~l~-~~~~~L~pgG~l~i~~ 151 (263)
T 3pfg_A 117 MFSSIGHLAGQAELDAALE-RFAAHVLPDGVVVVEP 151 (263)
T ss_dssp CTTGGGGSCHHHHHHHHHH-HHHHTEEEEEEEEECC
T ss_pred cCchhhhcCCHHHHHHHHH-HHHHhcCCCcEEEEEe
Confidence 75 3 2 24445566 9999999999999964
|
| >3hnr_A Probable methyltransferase BT9727_4108; structural genomics, PSI-2, protein structure initiative; 2.80A {Bacillus thuringiensis serovarkonkukian} | Back alignment and structure |
|---|
Probab=99.54 E-value=1.6e-13 Score=118.26 Aligned_cols=145 Identities=18% Similarity=0.161 Sum_probs=100.5
Q ss_pred CCCCCEEEEEecCCCccHHHHHhhhCCCcEEEEEeCChHHHHHHHHHHHcC--CCeEEEEccCCCCcccccCCCcEeEEE
Q 021911 141 IKPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKR--TNVIPIIEDARHPAKYRMLVGMVDVIF 218 (305)
Q Consensus 141 ~~~g~~VLDlG~G~G~~t~~la~~~~~~~~V~avD~s~~~~~~l~~~a~~~--~nI~~~~~D~~~~~~~~~~~~~fD~V~ 218 (305)
..++.+|||+|||+|.++..+++. ..+|+++|+|+ .+++.++++ .++.+++.|+.+.+. ..+||+|+
T Consensus 43 ~~~~~~vLDiGcG~G~~~~~l~~~---~~~v~~vD~s~----~~~~~a~~~~~~~~~~~~~d~~~~~~----~~~fD~v~ 111 (220)
T 3hnr_A 43 NKSFGNVLEFGVGTGNLTNKLLLA---GRTVYGIEPSR----EMRMIAKEKLPKEFSITEGDFLSFEV----PTSIDTIV 111 (220)
T ss_dssp HTCCSEEEEECCTTSHHHHHHHHT---TCEEEEECSCH----HHHHHHHHHSCTTCCEESCCSSSCCC----CSCCSEEE
T ss_pred ccCCCeEEEeCCCCCHHHHHHHhC---CCeEEEEeCCH----HHHHHHHHhCCCceEEEeCChhhcCC----CCCeEEEE
Confidence 457899999999999999999987 35899999999 445555443 489999999987642 27999999
Q ss_pred EeCC---ChhH--HHHHHHHHhccCCCCcEEEEEEcccccCCCCchh----------------h-------hHHHHHHHH
Q 021911 219 SDVA---QPDQ--ARILALNASYFLKAGGHFVISIKANCIDSTVPAE----------------A-------VFQSEVKKL 270 (305)
Q Consensus 219 ~d~~---~~~~--~~~l~~~a~~~LkpGG~lv~s~~~~~i~~~~~~~----------------~-------v~~~~~~~l 270 (305)
+... .++. ..++. ++.++|||||.|++++.... ...... . -.....+.|
T Consensus 112 ~~~~l~~~~~~~~~~~l~-~~~~~LkpgG~l~i~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 188 (220)
T 3hnr_A 112 STYAFHHLTDDEKNVAIA-KYSQLLNKGGKIVFADTIFA--DQDAYDKTVEAAKQRGFHQLANDLQTEYYTRIPVMQTIF 188 (220)
T ss_dssp EESCGGGSCHHHHHHHHH-HHHHHSCTTCEEEEEEECBS--SHHHHHHHHHHHHHTTCHHHHHHHHHSCCCBHHHHHHHH
T ss_pred ECcchhcCChHHHHHHHH-HHHHhcCCCCEEEEEecccc--ChHHHHHHHHHHHhCCCccchhhcchhhcCCHHHHHHHH
Confidence 9766 2333 33666 99999999999999873211 100000 0 012224566
Q ss_pred HHCCCcEeEEeecCCCCCceEEEEEEEcCCCCC
Q 021911 271 QQDQFKPFEQVTLEPFERDHACVVGGYRMPKKQ 303 (305)
Q Consensus 271 ~~~Gf~~~e~~~l~p~~~~~~~vv~~~~~~~~~ 303 (305)
+++||+++... ..+| ++++.+.++..+.+
T Consensus 189 ~~aGf~v~~~~-~~~~---~w~~~~~~~~~~~~ 217 (220)
T 3hnr_A 189 ENNGFHVTFTR-LNHF---VWVMEATKQLEHHH 217 (220)
T ss_dssp HHTTEEEEEEE-CSSS---EEEEEEEECSCCC-
T ss_pred HHCCCEEEEee-ccce---EEEEeehhhhhhhc
Confidence 89999876543 3444 77777777665543
|
| >3bus_A REBM, methyltransferase; rebeccamycin synthesis; HET: SAH; 2.65A {Lechevalieria aerocolonigenes} | Back alignment and structure |
|---|
Probab=99.54 E-value=2e-13 Score=121.55 Aligned_cols=141 Identities=16% Similarity=0.160 Sum_probs=100.6
Q ss_pred ccCCCCCCEEEEEecCCCccHHHHHhhhCCCcEEEEEeCChHHHHHHHHHHHcC---CCeEEEEccCCCCcccccCCCcE
Q 021911 138 NIWIKPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKR---TNVIPIIEDARHPAKYRMLVGMV 214 (305)
Q Consensus 138 ~~~~~~g~~VLDlG~G~G~~t~~la~~~~~~~~V~avD~s~~~~~~l~~~a~~~---~nI~~~~~D~~~~~~~~~~~~~f 214 (305)
.+.+.++.+|||+|||+|.++..+++.. ..+|+++|+|+..+..+.+.+... .++.+++.|+.+.+. ...+|
T Consensus 56 ~~~~~~~~~vLDiGcG~G~~~~~l~~~~--~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~---~~~~f 130 (273)
T 3bus_A 56 LLDVRSGDRVLDVGCGIGKPAVRLATAR--DVRVTGISISRPQVNQANARATAAGLANRVTFSYADAMDLPF---EDASF 130 (273)
T ss_dssp HSCCCTTCEEEEESCTTSHHHHHHHHHS--CCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCTTSCCS---CTTCE
T ss_pred hcCCCCCCEEEEeCCCCCHHHHHHHHhc--CCEEEEEeCCHHHHHHHHHHHHhcCCCcceEEEECccccCCC---CCCCc
Confidence 3356788999999999999999999875 469999999996666555555443 479999999987542 24689
Q ss_pred eEEEEeCC---ChhHHHHHHHHHhccCCCCcEEEEEEcccccCCCCchhhh---------------HHHHHHHHHHCCCc
Q 021911 215 DVIFSDVA---QPDQARILALNASYFLKAGGHFVISIKANCIDSTVPAEAV---------------FQSEVKKLQQDQFK 276 (305)
Q Consensus 215 D~V~~d~~---~~~~~~~l~~~a~~~LkpGG~lv~s~~~~~i~~~~~~~~v---------------~~~~~~~l~~~Gf~ 276 (305)
|+|++... .++...++. ++.++|||||+|++++.............. .....+.++++||+
T Consensus 131 D~v~~~~~l~~~~~~~~~l~-~~~~~L~pgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~ 209 (273)
T 3bus_A 131 DAVWALESLHHMPDRGRALR-EMARVLRPGGTVAIADFVLLAPVEGAKKEAVDAFRAGGGVLSLGGIDEYESDVRQAELV 209 (273)
T ss_dssp EEEEEESCTTTSSCHHHHHH-HHHTTEEEEEEEEEEEEEESSCCCHHHHHHHHHHHHHHTCCCCCCHHHHHHHHHHTTCE
T ss_pred cEEEEechhhhCCCHHHHHH-HHHHHcCCCeEEEEEEeeccCCCChhHHHHHHHHHhhcCccCCCCHHHHHHHHHHcCCe
Confidence 99998665 456777777 999999999999998732111110000000 01224566889999
Q ss_pred EeEEeecC
Q 021911 277 PFEQVTLE 284 (305)
Q Consensus 277 ~~e~~~l~ 284 (305)
+++...+.
T Consensus 210 ~~~~~~~~ 217 (273)
T 3bus_A 210 VTSTVDIS 217 (273)
T ss_dssp EEEEEECH
T ss_pred EEEEEECc
Confidence 98877653
|
| >1o54_A SAM-dependent O-methyltransferase; TM0748, structural genomi PSI, protein structure initiative, joint center for structu genomics; 1.65A {Thermotoga maritima} SCOP: c.66.1.13 | Back alignment and structure |
|---|
Probab=99.54 E-value=1.9e-13 Score=122.65 Aligned_cols=127 Identities=26% Similarity=0.282 Sum_probs=97.8
Q ss_pred CCCCCCEEEEEecCCCccHHHHHhhhCCCcEEEEEeCChHHHHHHHHHHHcC---CCeEEEEccCCCCcccccCCCcEeE
Q 021911 140 WIKPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKR---TNVIPIIEDARHPAKYRMLVGMVDV 216 (305)
Q Consensus 140 ~~~~g~~VLDlG~G~G~~t~~la~~~~~~~~V~avD~s~~~~~~l~~~a~~~---~nI~~~~~D~~~~~~~~~~~~~fD~ 216 (305)
.+.++.+|||+|||+|.++..+++.+++..+|+++|+|+.+++.+.+.++.. +++.+++.|+.+.. ...+||+
T Consensus 109 ~~~~~~~VLDiG~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~----~~~~~D~ 184 (277)
T 1o54_A 109 DVKEGDRIIDTGVGSGAMCAVLARAVGSSGKVFAYEKREEFAKLAESNLTKWGLIERVTIKVRDISEGF----DEKDVDA 184 (277)
T ss_dssp TCCTTCEEEEECCTTSHHHHHHHHHTTTTCEEEEECCCHHHHHHHHHHHHHTTCGGGEEEECCCGGGCC----SCCSEEE
T ss_pred CCCCCCEEEEECCcCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHcCCCCCEEEEECCHHHcc----cCCccCE
Confidence 5778899999999999999999998777789999999997766666655543 47999999987652 2358999
Q ss_pred EEEeCCChhHHHHHHHHHhccCCCCcEEEEEEcccccCCCCchhhhHHHHHHHHHHCCCcEeEEee
Q 021911 217 IFSDVAQPDQARILALNASYFLKAGGHFVISIKANCIDSTVPAEAVFQSEVKKLQQDQFKPFEQVT 282 (305)
Q Consensus 217 V~~d~~~~~~~~~l~~~a~~~LkpGG~lv~s~~~~~i~~~~~~~~v~~~~~~~l~~~Gf~~~e~~~ 282 (305)
|+++++.+. .++. ++.++|||+|.|++.+. + .....+..+.|++.||..++...
T Consensus 185 V~~~~~~~~--~~l~-~~~~~L~pgG~l~~~~~--~-------~~~~~~~~~~l~~~gf~~~~~~~ 238 (277)
T 1o54_A 185 LFLDVPDPW--NYID-KCWEALKGGGRFATVCP--T-------TNQVQETLKKLQELPFIRIEVWE 238 (277)
T ss_dssp EEECCSCGG--GTHH-HHHHHEEEEEEEEEEES--S-------HHHHHHHHHHHHHSSEEEEEEEC
T ss_pred EEECCcCHH--HHHH-HHHHHcCCCCEEEEEeC--C-------HHHHHHHHHHHHHCCCceeEEEE
Confidence 999987664 4565 88899999999999872 2 11223445667778998776543
|
| >1i9g_A Hypothetical protein RV2118C; mtase, adoMet, crystal, structural genomics, protein structure initiative; HET: SAM; 1.98A {Mycobacterium tuberculosis} SCOP: c.66.1.13 | Back alignment and structure |
|---|
Probab=99.54 E-value=1.7e-13 Score=122.69 Aligned_cols=127 Identities=25% Similarity=0.275 Sum_probs=96.6
Q ss_pred CCCCCCEEEEEecCCCccHHHHHhhhCCCcEEEEEeCChHHHHHHHHHHHc-----CCCeEEEEccCCCCcccccCCCcE
Q 021911 140 WIKPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKK-----RTNVIPIIEDARHPAKYRMLVGMV 214 (305)
Q Consensus 140 ~~~~g~~VLDlG~G~G~~t~~la~~~~~~~~V~avD~s~~~~~~l~~~a~~-----~~nI~~~~~D~~~~~~~~~~~~~f 214 (305)
.+.++.+|||+|||+|.++.++++.+++..+|+++|+|+.+++.+.+.++. .+++.+++.|+.+... ....|
T Consensus 96 ~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~g~~~~~v~~~~~d~~~~~~---~~~~~ 172 (280)
T 1i9g_A 96 DIFPGARVLEAGAGSGALTLSLLRAVGPAGQVISYEQRADHAEHARRNVSGCYGQPPDNWRLVVSDLADSEL---PDGSV 172 (280)
T ss_dssp TCCTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHHHTSCCTTEEEECSCGGGCCC---CTTCE
T ss_pred CCCCCCEEEEEcccccHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHhcCCCCCcEEEEECchHhcCC---CCCce
Confidence 578899999999999999999999877778999999999777666665543 2589999999876531 24689
Q ss_pred eEEEEeCCChhHHHHHHHHHhccCCCCcEEEEEEcccccCCCCchhhhHHHHHHHHHH-CCCcEeEEe
Q 021911 215 DVIFSDVAQPDQARILALNASYFLKAGGHFVISIKANCIDSTVPAEAVFQSEVKKLQQ-DQFKPFEQV 281 (305)
Q Consensus 215 D~V~~d~~~~~~~~~l~~~a~~~LkpGG~lv~s~~~~~i~~~~~~~~v~~~~~~~l~~-~Gf~~~e~~ 281 (305)
|+|+++++.+. .++. ++.++|||||+|++++. + . ..+.+.++.|++ .+|...+.+
T Consensus 173 D~v~~~~~~~~--~~l~-~~~~~L~pgG~l~~~~~--~------~-~~~~~~~~~l~~~~~f~~~~~~ 228 (280)
T 1i9g_A 173 DRAVLDMLAPW--EVLD-AVSRLLVAGGVLMVYVA--T------V-TQLSRIVEALRAKQCWTEPRAW 228 (280)
T ss_dssp EEEEEESSCGG--GGHH-HHHHHEEEEEEEEEEES--S------H-HHHHHHHHHHHHHSSBCCCEEE
T ss_pred eEEEECCcCHH--HHHH-HHHHhCCCCCEEEEEeC--C------H-HHHHHHHHHHHhcCCcCCcEEE
Confidence 99999988654 5566 88999999999999872 2 1 122334455655 677765544
|
| >3gu3_A Methyltransferase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; HET: SAH; 2.30A {Bacillus cereus} SCOP: c.66.1.49 PDB: 2gh1_A | Back alignment and structure |
|---|
Probab=99.54 E-value=1.7e-13 Score=123.39 Aligned_cols=119 Identities=9% Similarity=0.025 Sum_probs=91.5
Q ss_pred hhHHHHHHHccccccCCCCCCEEEEEecCCCccHHHHHhhhCCCcEEEEEeCChHHHHHHHHHHHcC-CCeEEEEccCCC
Q 021911 125 RSKLAAAVLGGVDNIWIKPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKR-TNVIPIIEDARH 203 (305)
Q Consensus 125 ~s~l~a~ll~~l~~~~~~~g~~VLDlG~G~G~~t~~la~~~~~~~~V~avD~s~~~~~~l~~~a~~~-~nI~~~~~D~~~ 203 (305)
...+...++..+. .+.++.+|||+|||+|.++..+++.+....+|+++|+|+..+..+.+.+... .++.+++.|+.+
T Consensus 6 ~~~~~~~~~~~~~--~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~v~~~~~d~~~ 83 (284)
T 3gu3_A 6 NDDYVSFLVNTVW--KITKPVHIVDYGCGYGYLGLVLMPLLPEGSKYTGIDSGETLLAEARELFRLLPYDSEFLEGDATE 83 (284)
T ss_dssp CHHHHHHHHHTTS--CCCSCCEEEEETCTTTHHHHHHTTTSCTTCEEEEEESCHHHHHHHHHHHHSSSSEEEEEESCTTT
T ss_pred chHHHHHHHHHHh--ccCCCCeEEEecCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHhcCCceEEEEcchhh
Confidence 3344444544332 4567899999999999999999998744579999999996655555555444 489999999987
Q ss_pred CcccccCCCcEeEEEEeCC---ChhHHHHHHHHHhccCCCCcEEEEEEcc
Q 021911 204 PAKYRMLVGMVDVIFSDVA---QPDQARILALNASYFLKAGGHFVISIKA 250 (305)
Q Consensus 204 ~~~~~~~~~~fD~V~~d~~---~~~~~~~l~~~a~~~LkpGG~lv~s~~~ 250 (305)
.+. .++||+|++... .++...++. ++.++|||||+|++..+.
T Consensus 84 ~~~----~~~fD~v~~~~~l~~~~~~~~~l~-~~~~~LkpgG~l~~~~~~ 128 (284)
T 3gu3_A 84 IEL----NDKYDIAICHAFLLHMTTPETMLQ-KMIHSVKKGGKIICFEPH 128 (284)
T ss_dssp CCC----SSCEEEEEEESCGGGCSSHHHHHH-HHHHTEEEEEEEEEEECC
T ss_pred cCc----CCCeeEEEECChhhcCCCHHHHHH-HHHHHcCCCCEEEEEecc
Confidence 542 469999999776 456677787 999999999999998743
|
| >2gb4_A Thiopurine S-methyltransferase; 18204406, thiopurine methyltransferase, structural genomics, PSI, protein structure initiative; HET: SAH; 1.25A {Mus musculus} PDB: 3bgi_A* 3bgd_A* 2bzg_A* 2h11_A* | Back alignment and structure |
|---|
Probab=99.54 E-value=1.2e-13 Score=122.86 Aligned_cols=140 Identities=16% Similarity=0.143 Sum_probs=95.3
Q ss_pred CCCCCEEEEEecCCCccHHHHHhhhCCCcEEEEEeCChHHHHHHHHHHH-------------------cCCCeEEEEccC
Q 021911 141 IKPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAK-------------------KRTNVIPIIEDA 201 (305)
Q Consensus 141 ~~~g~~VLDlG~G~G~~t~~la~~~~~~~~V~avD~s~~~~~~l~~~a~-------------------~~~nI~~~~~D~ 201 (305)
+.++.+|||+|||+|..+..||+. + .+|++||+|+.+++.+.+.+. ...+|.++++|+
T Consensus 66 ~~~~~~vLD~GCG~G~~~~~La~~-G--~~V~gvD~S~~~i~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~D~ 142 (252)
T 2gb4_A 66 GQSGLRVFFPLCGKAIEMKWFADR-G--HTVVGVEISEIGIREFFAEQNLSYTEEPLAEIAGAKVFKSSSGSISLYCCSI 142 (252)
T ss_dssp TCCSCEEEETTCTTCTHHHHHHHT-T--CEEEEECSCHHHHHHHHHHTTCCEEEEECTTSTTCEEEEETTSSEEEEESCT
T ss_pred CCCCCeEEEeCCCCcHHHHHHHHC-C--CeEEEEECCHHHHHHHHHhcccccccccccccccccccccCCCceEEEECcc
Confidence 457899999999999999999987 2 489999999977666554442 125799999999
Q ss_pred CCCcccccCCCcEeEEEEeCC-----ChhHHHHHHHHHhccCCCCcEEEEEEcccc-cCCCCchhhhHHHHHHHHHHCCC
Q 021911 202 RHPAKYRMLVGMVDVIFSDVA-----QPDQARILALNASYFLKAGGHFVISIKANC-IDSTVPAEAVFQSEVKKLQQDQF 275 (305)
Q Consensus 202 ~~~~~~~~~~~~fD~V~~d~~-----~~~~~~~l~~~a~~~LkpGG~lv~s~~~~~-i~~~~~~~~v~~~~~~~l~~~Gf 275 (305)
.+.+.. ..++||+|++... .++....+. ++.++|||||+|++.+.... .....++..+-.+++..+-..+|
T Consensus 143 ~~l~~~--~~~~FD~V~~~~~l~~l~~~~~~~~l~-~~~~~LkpGG~l~l~~~~~~~~~~~g~~~~~~~~el~~~l~~~f 219 (252)
T 2gb4_A 143 FDLPRA--NIGKFDRIWDRGALVAINPGDHDRYAD-IILSLLRKEFQYLVAVLSYDPTKHAGPPFYVPSAELKRLFGTKC 219 (252)
T ss_dssp TTGGGG--CCCCEEEEEESSSTTTSCGGGHHHHHH-HHHHTEEEEEEEEEEEEECCTTSCCCSSCCCCHHHHHHHHTTTE
T ss_pred ccCCcc--cCCCEEEEEEhhhhhhCCHHHHHHHHH-HHHHHcCCCeEEEEEEEecCCccCCCCCCCCCHHHHHHHhhCCe
Confidence 887532 1369999997544 234555666 99999999999976542111 11111122233455555544459
Q ss_pred cEeEEeecCCC
Q 021911 276 KPFEQVTLEPF 286 (305)
Q Consensus 276 ~~~e~~~l~p~ 286 (305)
+++.....+++
T Consensus 220 ~v~~~~~~~~~ 230 (252)
T 2gb4_A 220 SMQCLEEVDAL 230 (252)
T ss_dssp EEEEEEEEECC
T ss_pred EEEEEeccccc
Confidence 88877665554
|
| >3l8d_A Methyltransferase; structural genomics, PSI, nysgrc, protein structure initiative, NEW YORK SGX research center for STRU genomics; 1.70A {Bacillus thuringiensis} | Back alignment and structure |
|---|
Probab=99.54 E-value=1.3e-13 Score=120.48 Aligned_cols=131 Identities=18% Similarity=0.179 Sum_probs=96.0
Q ss_pred CCCCCEEEEEecCCCccHHHHHhhhCCCcEEEEEeCChHHHHHHHHHHHcC---CCeEEEEccCCCCcccccCCCcEeEE
Q 021911 141 IKPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKR---TNVIPIIEDARHPAKYRMLVGMVDVI 217 (305)
Q Consensus 141 ~~~g~~VLDlG~G~G~~t~~la~~~~~~~~V~avD~s~~~~~~l~~~a~~~---~nI~~~~~D~~~~~~~~~~~~~fD~V 217 (305)
++++.+|||+|||+|.++..+++. ..+|+++|+|+ .+++.++++ .++.+++.|+...+. ...+||+|
T Consensus 51 ~~~~~~vLDiG~G~G~~~~~l~~~---~~~v~~vD~s~----~~~~~a~~~~~~~~~~~~~~d~~~~~~---~~~~fD~v 120 (242)
T 3l8d_A 51 VKKEAEVLDVGCGDGYGTYKLSRT---GYKAVGVDISE----VMIQKGKERGEGPDLSFIKGDLSSLPF---ENEQFEAI 120 (242)
T ss_dssp SCTTCEEEEETCTTSHHHHHHHHT---TCEEEEEESCH----HHHHHHHTTTCBTTEEEEECBTTBCSS---CTTCEEEE
T ss_pred cCCCCeEEEEcCCCCHHHHHHHHc---CCeEEEEECCH----HHHHHHHhhcccCCceEEEcchhcCCC---CCCCccEE
Confidence 567899999999999999999987 34899999999 566666554 689999999987642 35799999
Q ss_pred EEeCC---ChhHHHHHHHHHhccCCCCcEEEEEEcccccCCCCchhh-----------hH-HHHHHHHHHCCCcEeEEee
Q 021911 218 FSDVA---QPDQARILALNASYFLKAGGHFVISIKANCIDSTVPAEA-----------VF-QSEVKKLQQDQFKPFEQVT 282 (305)
Q Consensus 218 ~~d~~---~~~~~~~l~~~a~~~LkpGG~lv~s~~~~~i~~~~~~~~-----------v~-~~~~~~l~~~Gf~~~e~~~ 282 (305)
++... .++...++. ++.++|||||+|++++............. .. ....+.++++||++++...
T Consensus 121 ~~~~~l~~~~~~~~~l~-~~~~~L~pgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~~~~ 199 (242)
T 3l8d_A 121 MAINSLEWTEEPLRALN-EIKRVLKSDGYACIAILGPTAKPRENSYPRLYGKDVVCNTMMPWEFEQLVKEQGFKVVDGIG 199 (242)
T ss_dssp EEESCTTSSSCHHHHHH-HHHHHEEEEEEEEEEEECTTCGGGGGGGGGGGTCCCSSCCCCHHHHHHHHHHTTEEEEEEEE
T ss_pred EEcChHhhccCHHHHHH-HHHHHhCCCeEEEEEEcCCcchhhhhhhhhhccccccccCCCHHHHHHHHHHcCCEEEEeec
Confidence 99665 456677777 99999999999999873221110000000 11 1234566899999988764
|
| >3ofk_A Nodulation protein S; NODS, N-methyltransferase, SAH, SAM, NOD factor, fixation, symbiosis, alpha/beta structure; HET: SAH; 1.85A {Bradyrhizobium SP} PDB: 3ofj_A* | Back alignment and structure |
|---|
Probab=99.54 E-value=6.7e-14 Score=120.38 Aligned_cols=149 Identities=15% Similarity=0.206 Sum_probs=100.6
Q ss_pred CCCCCCEEEEEecCCCccHHHHHhhhCCCcEEEEEeCChHHHHHHHHHHHcCCCeEEEEccCCCCcccccCCCcEeEEEE
Q 021911 140 WIKPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKRTNVIPIIEDARHPAKYRMLVGMVDVIFS 219 (305)
Q Consensus 140 ~~~~g~~VLDlG~G~G~~t~~la~~~~~~~~V~avD~s~~~~~~l~~~a~~~~nI~~~~~D~~~~~~~~~~~~~fD~V~~ 219 (305)
...++.+|||+|||+|.++..+++.. .+|+++|+|+.++..+.+.+....++.+++.|+.+.. ...+||+|++
T Consensus 48 ~~~~~~~vLDiGcG~G~~~~~l~~~~---~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~d~~~~~----~~~~fD~v~~ 120 (216)
T 3ofk_A 48 SSGAVSNGLEIGCAAGAFTEKLAPHC---KRLTVIDVMPRAIGRACQRTKRWSHISWAATDILQFS----TAELFDLIVV 120 (216)
T ss_dssp TTSSEEEEEEECCTTSHHHHHHGGGE---EEEEEEESCHHHHHHHHHHTTTCSSEEEEECCTTTCC----CSCCEEEEEE
T ss_pred ccCCCCcEEEEcCCCCHHHHHHHHcC---CEEEEEECCHHHHHHHHHhcccCCCeEEEEcchhhCC----CCCCccEEEE
Confidence 45677899999999999999999873 4899999999666665555555568999999998875 2579999999
Q ss_pred eCC-----ChhH-HHHHHHHHhccCCCCcEEEEEEcccc----cCCCCchhhhHHHHHHHHHHCCCcEeEEeecCCCCCc
Q 021911 220 DVA-----QPDQ-ARILALNASYFLKAGGHFVISIKANC----IDSTVPAEAVFQSEVKKLQQDQFKPFEQVTLEPFERD 289 (305)
Q Consensus 220 d~~-----~~~~-~~~l~~~a~~~LkpGG~lv~s~~~~~----i~~~~~~~~v~~~~~~~l~~~Gf~~~e~~~l~p~~~~ 289 (305)
... .++. ..++. ++.++|||||+|++++.... +... .....+..+....+..++.+........
T Consensus 121 ~~~l~~~~~~~~~~~~l~-~~~~~L~pgG~l~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~e~~~~~~~~~~ 194 (216)
T 3ofk_A 121 AEVLYYLEDMTQMRTAID-NMVKMLAPGGHLVFGSARDATCRRWGHV-----AGAETVITILTEALTEVERVQCQGQSAD 194 (216)
T ss_dssp ESCGGGSSSHHHHHHHHH-HHHHTEEEEEEEEEEEECHHHHHHTTCS-----CCHHHHHHHHHHHSEEEEEEEEECSSTT
T ss_pred ccHHHhCCCHHHHHHHHH-HHHHHcCCCCEEEEEecCCCcchhhhhh-----hhHHHHHHHHHhhccceEEEeccCCccc
Confidence 765 2232 35565 99999999999999874221 1111 1112222232233666665555544444
Q ss_pred eEEEEEEEcCCC
Q 021911 290 HACVVGGYRMPK 301 (305)
Q Consensus 290 ~~~vv~~~~~~~ 301 (305)
.-+++..++++.
T Consensus 195 ~d~~l~~~~~~~ 206 (216)
T 3ofk_A 195 EDCLLARFRNPE 206 (216)
T ss_dssp CEEEEEEEECCC
T ss_pred cchhHHHHhCCc
Confidence 445555555543
|
| >2ozv_A Hypothetical protein ATU0636; structural genomics, predicted transferase, predicted O-methyltransferase, PFAM PF05175; HET: MSE; 1.70A {Agrobacterium tumefaciens str} | Back alignment and structure |
|---|
Probab=99.53 E-value=1.5e-13 Score=122.59 Aligned_cols=146 Identities=14% Similarity=0.077 Sum_probs=101.6
Q ss_pred CCCCCCEEEEEecCCCccHHHHHhhhCCCcEEEEEeCChHHHHHHHHHHHc---C---CCeEEEEccCCCCccc----cc
Q 021911 140 WIKPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKK---R---TNVIPIIEDARHPAKY----RM 209 (305)
Q Consensus 140 ~~~~g~~VLDlG~G~G~~t~~la~~~~~~~~V~avD~s~~~~~~l~~~a~~---~---~nI~~~~~D~~~~~~~----~~ 209 (305)
...++.+|||+|||+|.++..++... +..+|++||+++.+++.+.++++. . .++.+++.|+.+.... ..
T Consensus 33 ~~~~~~~VLDlG~G~G~~~l~la~~~-~~~~v~gvDi~~~~~~~a~~n~~~~~~~~l~~~v~~~~~D~~~~~~~~~~~~~ 111 (260)
T 2ozv_A 33 ADDRACRIADLGAGAGAAGMAVAARL-EKAEVTLYERSQEMAEFARRSLELPDNAAFSARIEVLEADVTLRAKARVEAGL 111 (260)
T ss_dssp CCCSCEEEEECCSSSSHHHHHHHHHC-TTEEEEEEESSHHHHHHHHHHTTSGGGTTTGGGEEEEECCTTCCHHHHHHTTC
T ss_pred cccCCCEEEEeCChHhHHHHHHHHhC-CCCeEEEEECCHHHHHHHHHHHHhhhhCCCcceEEEEeCCHHHHhhhhhhhcc
Confidence 45678899999999999999999985 467999999999666666555554 3 2599999999887321 12
Q ss_pred CCCcEeEEEEeCCChh---------------------HHHHHHHHHhccCCCCcEEEEEEcccccCCCCchhhhHHHHHH
Q 021911 210 LVGMVDVIFSDVAQPD---------------------QARILALNASYFLKAGGHFVISIKANCIDSTVPAEAVFQSEVK 268 (305)
Q Consensus 210 ~~~~fD~V~~d~~~~~---------------------~~~~l~~~a~~~LkpGG~lv~s~~~~~i~~~~~~~~v~~~~~~ 268 (305)
...+||+|++|+|... ...++. .+.++|||+|+|++.+.. ..+.+.++
T Consensus 112 ~~~~fD~Vv~nPPy~~~~~~~~~~~~~~~a~~~~~~~~~~~l~-~~~~~LkpgG~l~~~~~~----------~~~~~~~~ 180 (260)
T 2ozv_A 112 PDEHFHHVIMNPPYNDAGDRRTPDALKAEAHAMTEGLFEDWIR-TASAIMVSGGQLSLISRP----------QSVAEIIA 180 (260)
T ss_dssp CTTCEEEEEECCCC---------------------CCHHHHHH-HHHHHEEEEEEEEEEECG----------GGHHHHHH
T ss_pred CCCCcCEEEECCCCcCCCCCCCcCHHHHHHhhcCcCCHHHHHH-HHHHHcCCCCEEEEEEcH----------HHHHHHHH
Confidence 3468999999987321 344555 899999999999998721 12233345
Q ss_pred HHHHCCCcEeEEeecCCCCC---ceEEEEEEEc
Q 021911 269 KLQQDQFKPFEQVTLEPFER---DHACVVGGYR 298 (305)
Q Consensus 269 ~l~~~Gf~~~e~~~l~p~~~---~~~~vv~~~~ 298 (305)
.+++. |...++..+.+... ..+++.+++.
T Consensus 181 ~l~~~-~~~~~i~~v~~~~~~~~~~~lv~~~k~ 212 (260)
T 2ozv_A 181 ACGSR-FGGLEITLIHPRPGEDAVRMLVTAIKG 212 (260)
T ss_dssp HHTTT-EEEEEEEEEESSTTSCCCEEEEEEEET
T ss_pred HHHhc-CCceEEEEEcCCCCCCceEEEEEEEeC
Confidence 56554 88777766554432 2345555554
|
| >3dli_A Methyltransferase; PSI-II, NYSGXRC, structural genomics, protein structure initiative; 2.46A {Archaeoglobus fulgidus} | Back alignment and structure |
|---|
Probab=99.53 E-value=5.6e-14 Score=123.14 Aligned_cols=151 Identities=16% Similarity=0.112 Sum_probs=104.9
Q ss_pred hhHHHHHHHccccccCCCCCCEEEEEecCCCccHHHHHhhhCCCcEEEEEeCChHHHHHHHHHHHcCCCeEEEEccCCCC
Q 021911 125 RSKLAAAVLGGVDNIWIKPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKRTNVIPIIEDARHP 204 (305)
Q Consensus 125 ~s~l~a~ll~~l~~~~~~~g~~VLDlG~G~G~~t~~la~~~~~~~~V~avD~s~~~~~~l~~~a~~~~nI~~~~~D~~~~ 204 (305)
...+...++..+. .++++.+|||+|||+|.++..+++. ..+|+++|+|+ .+++.++++ +.+++.|+.+.
T Consensus 25 ~~~~~~~~~~~l~--~~~~~~~vLDiGcG~G~~~~~l~~~---~~~v~gvD~s~----~~~~~a~~~--~~~~~~d~~~~ 93 (240)
T 3dli_A 25 RELVKARLRRYIP--YFKGCRRVLDIGCGRGEFLELCKEE---GIESIGVDINE----DMIKFCEGK--FNVVKSDAIEY 93 (240)
T ss_dssp HHHHHHHHGGGGG--GTTTCSCEEEETCTTTHHHHHHHHH---TCCEEEECSCH----HHHHHHHTT--SEEECSCHHHH
T ss_pred HHHHHHHHHHHHh--hhcCCCeEEEEeCCCCHHHHHHHhC---CCcEEEEECCH----HHHHHHHhh--cceeeccHHHH
Confidence 4445555554444 4567899999999999999999987 24799999999 777777764 88898888664
Q ss_pred cccccCCCcEeEEEEeCC-----ChhHHHHHHHHHhccCCCCcEEEEEEccccc---------CCCCchhhhHHHHHHHH
Q 021911 205 AKYRMLVGMVDVIFSDVA-----QPDQARILALNASYFLKAGGHFVISIKANCI---------DSTVPAEAVFQSEVKKL 270 (305)
Q Consensus 205 ~~~~~~~~~fD~V~~d~~-----~~~~~~~l~~~a~~~LkpGG~lv~s~~~~~i---------~~~~~~~~v~~~~~~~l 270 (305)
.. ....++||+|++... .++...++. ++.++|||||+|+++++.... ..............+.+
T Consensus 94 ~~-~~~~~~fD~i~~~~~l~~~~~~~~~~~l~-~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l 171 (240)
T 3dli_A 94 LK-SLPDKYLDGVMISHFVEHLDPERLFELLS-LCYSKMKYSSYIVIESPNPTSLYSLINFYIDPTHKKPVHPETLKFIL 171 (240)
T ss_dssp HH-TSCTTCBSEEEEESCGGGSCGGGHHHHHH-HHHHHBCTTCCEEEEEECTTSHHHHHHHTTSTTCCSCCCHHHHHHHH
T ss_pred hh-hcCCCCeeEEEECCchhhCCcHHHHHHHH-HHHHHcCCCcEEEEEeCCcchhHHHHHHhcCccccccCCHHHHHHHH
Confidence 21 123579999999655 235577777 999999999999998843210 00000000112224566
Q ss_pred HHCCCcEeEEeecCCCCC
Q 021911 271 QQDQFKPFEQVTLEPFER 288 (305)
Q Consensus 271 ~~~Gf~~~e~~~l~p~~~ 288 (305)
+++||++++...+.|+..
T Consensus 172 ~~aGf~~~~~~~~~~~~~ 189 (240)
T 3dli_A 172 EYLGFRDVKIEFFEECEE 189 (240)
T ss_dssp HHHTCEEEEEEEECCCCT
T ss_pred HHCCCeEEEEEEeccCcc
Confidence 889999999888776643
|
| >3duw_A OMT, O-methyltransferase, putative; alternating of alpha and beta with complex SAH; HET: SAH; 1.20A {Bacillus cereus} PDB: 3dul_A* | Back alignment and structure |
|---|
Probab=99.53 E-value=1.3e-13 Score=119.33 Aligned_cols=107 Identities=15% Similarity=0.117 Sum_probs=85.4
Q ss_pred CCCCCEEEEEecCCCccHHHHHhhhCCCcEEEEEeCChHHHHHHHHHHHcC---CCeEEEEccCCCCccc-ccC-CCcEe
Q 021911 141 IKPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKR---TNVIPIIEDARHPAKY-RML-VGMVD 215 (305)
Q Consensus 141 ~~~g~~VLDlG~G~G~~t~~la~~~~~~~~V~avD~s~~~~~~l~~~a~~~---~nI~~~~~D~~~~~~~-~~~-~~~fD 215 (305)
..++.+|||+|||+|.++.++++.+.+.++|+++|+++.++..+.+.++.. .+|.+++.|+.+..+. ... ..+||
T Consensus 56 ~~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~fD 135 (223)
T 3duw_A 56 IQGARNILEIGTLGGYSTIWLARGLSSGGRVVTLEASEKHADIARSNIERANLNDRVEVRTGLALDSLQQIENEKYEPFD 135 (223)
T ss_dssp HHTCSEEEEECCTTSHHHHHHHTTCCSSCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCHHHHHHHHHHTTCCCCS
T ss_pred hhCCCEEEEecCCccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHHHHhcCCCCcC
Confidence 456789999999999999999998754689999999997666665555443 3699999998654221 001 15799
Q ss_pred EEEEeCCChhHHHHHHHHHhccCCCCcEEEEEE
Q 021911 216 VIFSDVAQPDQARILALNASYFLKAGGHFVISI 248 (305)
Q Consensus 216 ~V~~d~~~~~~~~~l~~~a~~~LkpGG~lv~s~ 248 (305)
+|+++.+.+.....+. ++.++|||||.|++..
T Consensus 136 ~v~~d~~~~~~~~~l~-~~~~~L~pgG~lv~~~ 167 (223)
T 3duw_A 136 FIFIDADKQNNPAYFE-WALKLSRPGTVIIGDN 167 (223)
T ss_dssp EEEECSCGGGHHHHHH-HHHHTCCTTCEEEEES
T ss_pred EEEEcCCcHHHHHHHH-HHHHhcCCCcEEEEeC
Confidence 9999999888888887 9999999999888864
|
| >3mq2_A 16S rRNA methyltransferase; methyltranferase, ribosomal, antibiotic resistance, aminoglycoside, S-adenosyl-L-methionine; HET: SAH; 1.69A {Streptomyces SP} | Back alignment and structure |
|---|
Probab=99.53 E-value=8.9e-14 Score=119.99 Aligned_cols=138 Identities=14% Similarity=0.191 Sum_probs=96.4
Q ss_pred CCCCCCEEEEEecCCCccHHHHHhhhCCCcEEEEEeCChHHHHHHHHHHHcC------CCeEEEEccCCCCcccccCCCc
Q 021911 140 WIKPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKR------TNVIPIIEDARHPAKYRMLVGM 213 (305)
Q Consensus 140 ~~~~g~~VLDlG~G~G~~t~~la~~~~~~~~V~avD~s~~~~~~l~~~a~~~------~nI~~~~~D~~~~~~~~~~~~~ 213 (305)
.+.++.+|||+|||+|.++..+++.. +..+|++||+|+.++..+.+.++++ +++.+++.|+.+.+. ....
T Consensus 24 ~~~~~~~vLDiGcG~G~~~~~la~~~-p~~~v~gvD~s~~~l~~~~~~a~~~~~~~~~~~v~~~~~d~~~l~~---~~~~ 99 (218)
T 3mq2_A 24 RSQYDDVVLDVGTGDGKHPYKVARQN-PSRLVVALDADKSRMEKISAKAAAKPAKGGLPNLLYLWATAERLPP---LSGV 99 (218)
T ss_dssp HTTSSEEEEEESCTTCHHHHHHHHHC-TTEEEEEEESCGGGGHHHHHHHTSCGGGTCCTTEEEEECCSTTCCS---CCCE
T ss_pred hccCCCEEEEecCCCCHHHHHHHHHC-CCCEEEEEECCHHHHHHHHHHHHHhhhhcCCCceEEEecchhhCCC---CCCC
Confidence 46788999999999999999999984 5789999999997665555445432 589999999988653 2345
Q ss_pred EeEEEEeCCChh--------HHHHHHHHHhccCCCCcEEEEEEcccccCCC--------CchhhhHHH-HHHHHHHCCCc
Q 021911 214 VDVIFSDVAQPD--------QARILALNASYFLKAGGHFVISIKANCIDST--------VPAEAVFQS-EVKKLQQDQFK 276 (305)
Q Consensus 214 fD~V~~d~~~~~--------~~~~l~~~a~~~LkpGG~lv~s~~~~~i~~~--------~~~~~v~~~-~~~~l~~~Gf~ 276 (305)
|.|++.++... +..++. ++.++|||||+|+++......... ......+.+ ....+.++||+
T Consensus 100 -d~v~~~~~~~~~~~~~~~~~~~~l~-~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~aGf~ 177 (218)
T 3mq2_A 100 -GELHVLMPWGSLLRGVLGSSPEMLR-GMAAVCRPGASFLVALNLHAWRPSVPEVGEHPEPTPDSADEWLAPRYAEAGWK 177 (218)
T ss_dssp -EEEEEESCCHHHHHHHHTSSSHHHH-HHHHTEEEEEEEEEEEEGGGBTTBCGGGTTCCCCCHHHHHHHHHHHHHHTTEE
T ss_pred -CEEEEEccchhhhhhhhccHHHHHH-HHHHHcCCCcEEEEEeccccccccccccccCCccchHHHHHHHHHHHHHcCCC
Confidence 88877665433 256666 999999999999997632211110 011112223 23566889999
Q ss_pred EeEEeec
Q 021911 277 PFEQVTL 283 (305)
Q Consensus 277 ~~e~~~l 283 (305)
+.++..+
T Consensus 178 i~~~~~~ 184 (218)
T 3mq2_A 178 LADCRYL 184 (218)
T ss_dssp EEEEEEE
T ss_pred ceeeecc
Confidence 9886544
|
| >2b25_A Hypothetical protein; structural genomics, methyl transferase, SAM, structural GEN consortium, SGC, transferase; HET: SAM; 2.50A {Homo sapiens} SCOP: c.66.1.13 | Back alignment and structure |
|---|
Probab=99.53 E-value=2.2e-13 Score=125.67 Aligned_cols=105 Identities=26% Similarity=0.244 Sum_probs=83.2
Q ss_pred CCCCCCEEEEEecCCCccHHHHHhhhCCCcEEEEEeCChHHHHHHHHHHHc-------------CCCeEEEEccCCCCcc
Q 021911 140 WIKPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKK-------------RTNVIPIIEDARHPAK 206 (305)
Q Consensus 140 ~~~~g~~VLDlG~G~G~~t~~la~~~~~~~~V~avD~s~~~~~~l~~~a~~-------------~~nI~~~~~D~~~~~~ 206 (305)
.+.++.+|||+|||+|.++..++..+++.++|+++|+++.+++.+.+.+.. ..+|.+++.|+.+...
T Consensus 102 ~~~~g~~VLDiG~G~G~~~~~la~~~g~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~ln~~~~~~~~v~~~~~d~~~~~~ 181 (336)
T 2b25_A 102 DINPGDTVLEAGSGSGGMSLFLSKAVGSQGRVISFEVRKDHHDLAKKNYKHWRDSWKLSHVEEWPDNVDFIHKDISGATE 181 (336)
T ss_dssp TCCTTCEEEEECCTTSHHHHHHHHHHCTTCEEEEEESSHHHHHHHHHHHHHHHHHHTTTCSSCCCCCEEEEESCTTCCC-
T ss_pred CCCCCCEEEEeCCCcCHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHHhhcccccccccccCCceEEEECChHHccc
Confidence 578899999999999999999999887778999999999777766666553 2589999999987531
Q ss_pred cccCCCcEeEEEEeCCChhHHHHHHHHHhccCCCCcEEEEEE
Q 021911 207 YRMLVGMVDVIFSDVAQPDQARILALNASYFLKAGGHFVISI 248 (305)
Q Consensus 207 ~~~~~~~fD~V~~d~~~~~~~~~l~~~a~~~LkpGG~lv~s~ 248 (305)
. ....+||+|+++++.+.. ++. ++.++|||||+|++..
T Consensus 182 ~-~~~~~fD~V~~~~~~~~~--~l~-~~~~~LkpgG~lv~~~ 219 (336)
T 2b25_A 182 D-IKSLTFDAVALDMLNPHV--TLP-VFYPHLKHGGVCAVYV 219 (336)
T ss_dssp -------EEEEEECSSSTTT--THH-HHGGGEEEEEEEEEEE
T ss_pred c-cCCCCeeEEEECCCCHHH--HHH-HHHHhcCCCcEEEEEe
Confidence 1 123579999999886654 455 8899999999999886
|
| >1vl5_A Unknown conserved protein BH2331; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; HET: MSE; 1.95A {Bacillus halodurans} SCOP: c.66.1.41 | Back alignment and structure |
|---|
Probab=99.52 E-value=2.2e-13 Score=120.63 Aligned_cols=102 Identities=18% Similarity=0.220 Sum_probs=82.2
Q ss_pred CCCCCCEEEEEecCCCccHHHHHhhhCCCcEEEEEeCChHHHHHHHHHHHcC--CCeEEEEccCCCCcccccCCCcEeEE
Q 021911 140 WIKPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKR--TNVIPIIEDARHPAKYRMLVGMVDVI 217 (305)
Q Consensus 140 ~~~~g~~VLDlG~G~G~~t~~la~~~~~~~~V~avD~s~~~~~~l~~~a~~~--~nI~~~~~D~~~~~~~~~~~~~fD~V 217 (305)
.+.++.+|||+|||+|.++..+++.. .+|+++|+|+.++..+.+.++.. +++.+++.|+...+ ...++||+|
T Consensus 34 ~~~~~~~vLDiGcG~G~~~~~l~~~~---~~v~gvD~s~~~l~~a~~~~~~~~~~~v~~~~~d~~~l~---~~~~~fD~V 107 (260)
T 1vl5_A 34 ALKGNEEVLDVATGGGHVANAFAPFV---KKVVAFDLTEDILKVARAFIEGNGHQQVEYVQGDAEQMP---FTDERFHIV 107 (260)
T ss_dssp TCCSCCEEEEETCTTCHHHHHHGGGS---SEEEEEESCHHHHHHHHHHHHHTTCCSEEEEECCC-CCC---SCTTCEEEE
T ss_pred CCCCCCEEEEEeCCCCHHHHHHHHhC---CEEEEEeCCHHHHHHHHHHHHhcCCCceEEEEecHHhCC---CCCCCEEEE
Confidence 46788999999999999999999885 39999999996655555544433 57999999998754 235799999
Q ss_pred EEeCC---ChhHHHHHHHHHhccCCCCcEEEEEE
Q 021911 218 FSDVA---QPDQARILALNASYFLKAGGHFVISI 248 (305)
Q Consensus 218 ~~d~~---~~~~~~~l~~~a~~~LkpGG~lv~s~ 248 (305)
++... .++...++. ++.++|||||+|+++.
T Consensus 108 ~~~~~l~~~~d~~~~l~-~~~r~LkpgG~l~~~~ 140 (260)
T 1vl5_A 108 TCRIAAHHFPNPASFVS-EAYRVLKKGGQLLLVD 140 (260)
T ss_dssp EEESCGGGCSCHHHHHH-HHHHHEEEEEEEEEEE
T ss_pred EEhhhhHhcCCHHHHHH-HHHHHcCCCCEEEEEE
Confidence 99866 467778887 9999999999999975
|
| >1l3i_A Precorrin-6Y methyltransferase/putative decarboxylase; structural genomics, beta barrel, rossmann fold, tetramer; HET: SAH; 1.95A {Methanothermobacterthermautotrophicus} SCOP: c.66.1.22 PDB: 1kxz_A 1l3b_A 1f38_A 1l3c_A* | Back alignment and structure |
|---|
Probab=99.52 E-value=1.4e-13 Score=115.31 Aligned_cols=134 Identities=14% Similarity=0.103 Sum_probs=98.3
Q ss_pred hHHHHHHHccccccCCCCCCEEEEEecCCCccHHHHHhhhCCCcEEEEEeCChHHHHHHHHHHHcC---CCeEEEEccCC
Q 021911 126 SKLAAAVLGGVDNIWIKPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKR---TNVIPIIEDAR 202 (305)
Q Consensus 126 s~l~a~ll~~l~~~~~~~g~~VLDlG~G~G~~t~~la~~~~~~~~V~avD~s~~~~~~l~~~a~~~---~nI~~~~~D~~ 202 (305)
..+...++..+ .+.++.+|||+|||+|.++..++... .+|+++|+|+.+++.+.+.++.. +++.+++.|+.
T Consensus 19 ~~~~~~~~~~~---~~~~~~~vldiG~G~G~~~~~l~~~~---~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~ 92 (192)
T 1l3i_A 19 MEVRCLIMCLA---EPGKNDVAVDVGCGTGGVTLELAGRV---RRVYAIDRNPEAISTTEMNLQRHGLGDNVTLMEGDAP 92 (192)
T ss_dssp HHHHHHHHHHH---CCCTTCEEEEESCTTSHHHHHHHTTS---SEEEEEESCHHHHHHHHHHHHHTTCCTTEEEEESCHH
T ss_pred HHHHHHHHHhc---CCCCCCEEEEECCCCCHHHHHHHHhc---CEEEEEECCHHHHHHHHHHHHHcCCCcceEEEecCHH
Confidence 34444444322 57788999999999999999999874 69999999997666665555443 58999999986
Q ss_pred CCcccccCCCcEeEEEEeCCChhHHHHHHHHHhccCCCCcEEEEEEcccccCCCCchhhhHHHHHHHHHHCCCcEe
Q 021911 203 HPAKYRMLVGMVDVIFSDVAQPDQARILALNASYFLKAGGHFVISIKANCIDSTVPAEAVFQSEVKKLQQDQFKPF 278 (305)
Q Consensus 203 ~~~~~~~~~~~fD~V~~d~~~~~~~~~l~~~a~~~LkpGG~lv~s~~~~~i~~~~~~~~v~~~~~~~l~~~Gf~~~ 278 (305)
+..+. ...||+|+++.+..+...++. ++.++|+|+|++++.+. . ........+.+++.||.+.
T Consensus 93 ~~~~~---~~~~D~v~~~~~~~~~~~~l~-~~~~~l~~gG~l~~~~~--~-------~~~~~~~~~~l~~~g~~~~ 155 (192)
T 1l3i_A 93 EALCK---IPDIDIAVVGGSGGELQEILR-IIKDKLKPGGRIIVTAI--L-------LETKFEAMECLRDLGFDVN 155 (192)
T ss_dssp HHHTT---SCCEEEEEESCCTTCHHHHHH-HHHHTEEEEEEEEEEEC--B-------HHHHHHHHHHHHHTTCCCE
T ss_pred Hhccc---CCCCCEEEECCchHHHHHHHH-HHHHhcCCCcEEEEEec--C-------cchHHHHHHHHHHCCCceE
Confidence 52211 258999999988777777787 99999999999999872 1 1122334566788888543
|
| >3a27_A TYW2, uncharacterized protein MJ1557; wybutosine modification, transferase; HET: SAM; 2.00A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=99.52 E-value=9.1e-14 Score=124.88 Aligned_cols=102 Identities=22% Similarity=0.225 Sum_probs=85.2
Q ss_pred CCCCCCEEEEEecCCCccHHHHHhhhCCCcEEEEEeCChHHHHHHHHHHHcC--CCeEEEEccCCCCcccccCCCcEeEE
Q 021911 140 WIKPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKR--TNVIPIIEDARHPAKYRMLVGMVDVI 217 (305)
Q Consensus 140 ~~~~g~~VLDlG~G~G~~t~~la~~~~~~~~V~avD~s~~~~~~l~~~a~~~--~nI~~~~~D~~~~~~~~~~~~~fD~V 217 (305)
.+.++.+|||+|||+|.++..+|... +.++|+++|+|+.+++.+.++++.+ +|+.+++.|+.+. +. ..+||+|
T Consensus 116 ~~~~~~~VLDlgcG~G~~s~~la~~~-~~~~V~~vD~s~~av~~a~~n~~~n~l~~~~~~~~d~~~~-~~---~~~~D~V 190 (272)
T 3a27_A 116 ISNENEVVVDMFAGIGYFTIPLAKYS-KPKLVYAIEKNPTAYHYLCENIKLNKLNNVIPILADNRDV-EL---KDVADRV 190 (272)
T ss_dssp SCCTTCEEEETTCTTTTTHHHHHHHT-CCSEEEEEECCHHHHHHHHHHHHHTTCSSEEEEESCGGGC-CC---TTCEEEE
T ss_pred hcCCCCEEEEecCcCCHHHHHHHHhC-CCCEEEEEeCCHHHHHHHHHHHHHcCCCCEEEEECChHHc-Cc---cCCceEE
Confidence 46788999999999999999999985 3569999999998887777777665 5899999999876 32 4689999
Q ss_pred EEeCCChhHHHHHHHHHhccCCCCcEEEEEE
Q 021911 218 FSDVAQPDQARILALNASYFLKAGGHFVISI 248 (305)
Q Consensus 218 ~~d~~~~~~~~~l~~~a~~~LkpGG~lv~s~ 248 (305)
++|+|. ...+++. .+.+.|||+|.|+++.
T Consensus 191 i~d~p~-~~~~~l~-~~~~~LkpgG~l~~s~ 219 (272)
T 3a27_A 191 IMGYVH-KTHKFLD-KTFEFLKDRGVIHYHE 219 (272)
T ss_dssp EECCCS-SGGGGHH-HHHHHEEEEEEEEEEE
T ss_pred EECCcc-cHHHHHH-HHHHHcCCCCEEEEEE
Confidence 999985 4455665 8889999999999885
|
| >3ege_A Putative methyltransferase from antibiotic biosyn pathway; YP_324569.1, putative methyltransferase from antibiotic BIOS pathway; 2.40A {Anabaena variabilis atcc 29413} | Back alignment and structure |
|---|
Probab=99.52 E-value=9.2e-14 Score=123.56 Aligned_cols=143 Identities=17% Similarity=0.167 Sum_probs=101.9
Q ss_pred hHHHHHHHccccccCCCCCCEEEEEecCCCccHHHHHhhhCCCcEEEEEeCChHHHHHHHHHHHcCCCeEEEEccCCCCc
Q 021911 126 SKLAAAVLGGVDNIWIKPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKRTNVIPIIEDARHPA 205 (305)
Q Consensus 126 s~l~a~ll~~l~~~~~~~g~~VLDlG~G~G~~t~~la~~~~~~~~V~avD~s~~~~~~l~~~a~~~~nI~~~~~D~~~~~ 205 (305)
..+...++..+ .+.++.+|||+|||+|.++..+++. ..+|+++|+|+ .+++.++++.|+.+++.|+.+.+
T Consensus 20 ~~~~~~l~~~~---~~~~~~~vLDiGcG~G~~~~~l~~~---~~~v~gvD~s~----~~~~~a~~~~~~~~~~~d~~~~~ 89 (261)
T 3ege_A 20 IRIVNAIINLL---NLPKGSVIADIGAGTGGYSVALANQ---GLFVYAVEPSI----VMRQQAVVHPQVEWFTGYAENLA 89 (261)
T ss_dssp HHHHHHHHHHH---CCCTTCEEEEETCTTSHHHHHHHTT---TCEEEEECSCH----HHHHSSCCCTTEEEECCCTTSCC
T ss_pred HHHHHHHHHHh---CCCCCCEEEEEcCcccHHHHHHHhC---CCEEEEEeCCH----HHHHHHHhccCCEEEECchhhCC
Confidence 34555554333 4578899999999999999999973 46999999999 77877777779999999998754
Q ss_pred ccccCCCcEeEEEEeCC---ChhHHHHHHHHHhccCCCCcEEEEEEcccccCCCCchhhh-------------HHHHHHH
Q 021911 206 KYRMLVGMVDVIFSDVA---QPDQARILALNASYFLKAGGHFVISIKANCIDSTVPAEAV-------------FQSEVKK 269 (305)
Q Consensus 206 ~~~~~~~~fD~V~~d~~---~~~~~~~l~~~a~~~LkpGG~lv~s~~~~~i~~~~~~~~v-------------~~~~~~~ 269 (305)
...++||+|++... .++...++. ++.++|| ||++++.+.............. ...++..
T Consensus 90 ---~~~~~fD~v~~~~~l~~~~~~~~~l~-~~~~~Lk-gG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 164 (261)
T 3ege_A 90 ---LPDKSVDGVISILAIHHFSHLEKSFQ-EMQRIIR-DGTIVLLTFDIRLAQRIWLYDYFPFLWEDALRFLPLDEQINL 164 (261)
T ss_dssp ---SCTTCBSEEEEESCGGGCSSHHHHHH-HHHHHBC-SSCEEEEEECGGGCCCCGGGGTCHHHHHHHHTSCCHHHHHHH
T ss_pred ---CCCCCEeEEEEcchHhhccCHHHHHH-HHHHHhC-CcEEEEEEcCCchhHHHHHHHHHHHHhhhhhhhCCCHHHHHH
Confidence 23579999999776 467778887 9999999 9988887743211110000000 1122337
Q ss_pred HHHCCCcEeEEeec
Q 021911 270 LQQDQFKPFEQVTL 283 (305)
Q Consensus 270 l~~~Gf~~~e~~~l 283 (305)
|+++||+.++...+
T Consensus 165 l~~aGF~~v~~~~~ 178 (261)
T 3ege_A 165 LQENTKRRVEAIPF 178 (261)
T ss_dssp HHHHHCSEEEEEEC
T ss_pred HHHcCCCceeEEEe
Confidence 78899988776543
|
| >1xxl_A YCGJ protein; structural genomics, protein structure initiative, PSI, NEW YORK SGX research center for structural genomics, nysgxrc; 2.10A {Bacillus subtilis} SCOP: c.66.1.41 PDB: 2glu_A* | Back alignment and structure |
|---|
Probab=99.52 E-value=2.1e-13 Score=119.54 Aligned_cols=102 Identities=22% Similarity=0.201 Sum_probs=82.9
Q ss_pred CCCCCCEEEEEecCCCccHHHHHhhhCCCcEEEEEeCChHHHHHHHHHHHcC--CCeEEEEccCCCCcccccCCCcEeEE
Q 021911 140 WIKPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKR--TNVIPIIEDARHPAKYRMLVGMVDVI 217 (305)
Q Consensus 140 ~~~~g~~VLDlG~G~G~~t~~la~~~~~~~~V~avD~s~~~~~~l~~~a~~~--~nI~~~~~D~~~~~~~~~~~~~fD~V 217 (305)
.++++.+|||+|||+|.++..+++.. .+|+++|+|+.++..+.+.+... +++.+++.|+...+ ....+||+|
T Consensus 18 ~~~~~~~vLDiGcG~G~~~~~l~~~~---~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~---~~~~~fD~v 91 (239)
T 1xxl_A 18 ECRAEHRVLDIGAGAGHTALAFSPYV---QECIGVDATKEMVEVASSFAQEKGVENVRFQQGTAESLP---FPDDSFDII 91 (239)
T ss_dssp TCCTTCEEEEESCTTSHHHHHHGGGS---SEEEEEESCHHHHHHHHHHHHHHTCCSEEEEECBTTBCC---SCTTCEEEE
T ss_pred CcCCCCEEEEEccCcCHHHHHHHHhC---CEEEEEECCHHHHHHHHHHHHHcCCCCeEEEecccccCC---CCCCcEEEE
Confidence 68889999999999999999999874 38999999996665555544332 68999999997654 235789999
Q ss_pred EEeCC---ChhHHHHHHHHHhccCCCCcEEEEEE
Q 021911 218 FSDVA---QPDQARILALNASYFLKAGGHFVISI 248 (305)
Q Consensus 218 ~~d~~---~~~~~~~l~~~a~~~LkpGG~lv~s~ 248 (305)
++... .++...++. ++.++|||||+|+++.
T Consensus 92 ~~~~~l~~~~~~~~~l~-~~~~~LkpgG~l~~~~ 124 (239)
T 1xxl_A 92 TCRYAAHHFSDVRKAVR-EVARVLKQDGRFLLVD 124 (239)
T ss_dssp EEESCGGGCSCHHHHHH-HHHHHEEEEEEEEEEE
T ss_pred EECCchhhccCHHHHHH-HHHHHcCCCcEEEEEE
Confidence 99765 456777777 9999999999999986
|
| >3g07_A 7SK snRNA methylphosphate capping enzyme; structural genomics consortium (SGC), methyltransferase, phosphoprotein, S-adenosyl-L-methionine; HET: SAM; 2.65A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.52 E-value=1.2e-13 Score=125.18 Aligned_cols=140 Identities=16% Similarity=0.173 Sum_probs=91.9
Q ss_pred CCCEEEEEecCCCccHHHHHhhhCCCcEEEEEeCChHHHHHHHHHHHcC-------------------------------
Q 021911 143 PGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKR------------------------------- 191 (305)
Q Consensus 143 ~g~~VLDlG~G~G~~t~~la~~~~~~~~V~avD~s~~~~~~l~~~a~~~------------------------------- 191 (305)
++.+|||||||+|.++..|+..++ ..+|++||+|+.++..+.+.++..
T Consensus 46 ~~~~VLDiGCG~G~~~~~la~~~~-~~~v~gvDis~~~i~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 124 (292)
T 3g07_A 46 RGRDVLDLGCNVGHLTLSIACKWG-PSRMVGLDIDSRLIHSARQNIRHYLSEELRLPPQTLEGDPGAEGEEGTTTVRKRS 124 (292)
T ss_dssp TTSEEEEESCTTCHHHHHHHHHTC-CSEEEEEESCHHHHHHHHHTC----------------------------------
T ss_pred CCCcEEEeCCCCCHHHHHHHHHcC-CCEEEEECCCHHHHHHHHHHHHhhhhhhccccccccccccccccccccccccccc
Confidence 678999999999999999999874 469999999995444433332211
Q ss_pred -----------------------------CCeEEEEccCCCCccc--ccCCCcEeEEEEeCCC---h------hHHHHHH
Q 021911 192 -----------------------------TNVIPIIEDARHPAKY--RMLVGMVDVIFSDVAQ---P------DQARILA 231 (305)
Q Consensus 192 -----------------------------~nI~~~~~D~~~~~~~--~~~~~~fD~V~~d~~~---~------~~~~~l~ 231 (305)
.||.+++.|+...... .....+||+|+|.... . +..+++.
T Consensus 125 ~~p~~~~~~~g~~~~p~~~~~~~~~~~~p~~v~f~~~d~~~~~~~~~~~~~~~fD~I~~~~vl~~ihl~~~~~~~~~~l~ 204 (292)
T 3g07_A 125 CFPASLTASRGPIAAPQVPLDGADTSVFPNNVVFVTGNYVLDRDDLVEAQTPEYDVVLCLSLTKWVHLNWGDEGLKRMFR 204 (292)
T ss_dssp -----------------CCSSTTCCSSTTTTEEEEECCCCCSSHHHHTTCCCCEEEEEEESCHHHHHHHHHHHHHHHHHH
T ss_pred cccchhhhccCccccccccccccccccccccceEEecccccCccccccccCCCcCEEEEChHHHHhhhcCCHHHHHHHHH
Confidence 3799999999765411 1235799999997762 1 4556666
Q ss_pred HHHhccCCCCcEEEEEEcccc-c-CCCCchhhhHH----------HHHHHHHH--CCCcEeEEeecC
Q 021911 232 LNASYFLKAGGHFVISIKANC-I-DSTVPAEAVFQ----------SEVKKLQQ--DQFKPFEQVTLE 284 (305)
Q Consensus 232 ~~a~~~LkpGG~lv~s~~~~~-i-~~~~~~~~v~~----------~~~~~l~~--~Gf~~~e~~~l~ 284 (305)
+++++|||||+|++...... . .........+. +..+.|.+ .||+.++.+...
T Consensus 205 -~~~~~LkpGG~lil~~~~~~~y~~~~~~~~~~~~~~~~~~~~p~~~~~~L~~~~~GF~~~~~~~~~ 270 (292)
T 3g07_A 205 -RIYRHLRPGGILVLEPQPWSSYGKRKTLTETIYKNYYRIQLKPEQFSSYLTSPDVGFSSYELVATP 270 (292)
T ss_dssp -HHHHHEEEEEEEEEECCCHHHHHTTTTSCHHHHHHHHHCCCCGGGHHHHHTSTTTCCCEEEEC---
T ss_pred -HHHHHhCCCcEEEEecCCchhhhhhhcccHHHHhhhhcEEEcHHHHHHHHHhcCCCceEEEEeccC
Confidence 99999999999999752111 0 00000111111 12456666 899988877653
|
| >2o57_A Putative sarcosine dimethylglycine methyltransferase; structural genomics, protein structure initiative, PSI-2; 1.95A {Galdieria sulphuraria} SCOP: c.66.1.18 | Back alignment and structure |
|---|
Probab=99.52 E-value=2.6e-13 Score=122.52 Aligned_cols=139 Identities=13% Similarity=0.114 Sum_probs=99.3
Q ss_pred CCCCCCEEEEEecCCCccHHHHHhhhCCCcEEEEEeCChHHHHHHHHHHHcC---CCeEEEEccCCCCcccccCCCcEeE
Q 021911 140 WIKPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKR---TNVIPIIEDARHPAKYRMLVGMVDV 216 (305)
Q Consensus 140 ~~~~g~~VLDlG~G~G~~t~~la~~~~~~~~V~avD~s~~~~~~l~~~a~~~---~nI~~~~~D~~~~~~~~~~~~~fD~ 216 (305)
.+.++.+|||+|||+|.++..+++.++ .+|+++|+|+.++..+.+.++.. +++.+++.|+.+.+. ...+||+
T Consensus 79 ~~~~~~~vLDiGcG~G~~~~~l~~~~~--~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~---~~~~fD~ 153 (297)
T 2o57_A 79 VLQRQAKGLDLGAGYGGAARFLVRKFG--VSIDCLNIAPVQNKRNEEYNNQAGLADNITVKYGSFLEIPC---EDNSYDF 153 (297)
T ss_dssp CCCTTCEEEEETCTTSHHHHHHHHHHC--CEEEEEESCHHHHHHHHHHHHHHTCTTTEEEEECCTTSCSS---CTTCEEE
T ss_pred CCCCCCEEEEeCCCCCHHHHHHHHHhC--CEEEEEeCCHHHHHHHHHHHHhcCCCcceEEEEcCcccCCC---CCCCEeE
Confidence 467889999999999999999999863 58999999996655555444332 579999999987642 3578999
Q ss_pred EEEeCC---ChhHHHHHHHHHhccCCCCcEEEEEEcccccCCCCch-hhh-----------HHHHHHHHHHCCCcEeEEe
Q 021911 217 IFSDVA---QPDQARILALNASYFLKAGGHFVISIKANCIDSTVPA-EAV-----------FQSEVKKLQQDQFKPFEQV 281 (305)
Q Consensus 217 V~~d~~---~~~~~~~l~~~a~~~LkpGG~lv~s~~~~~i~~~~~~-~~v-----------~~~~~~~l~~~Gf~~~e~~ 281 (305)
|++... .++...++. ++.++|||||+|++++........... ..+ .....+.|+++||+++++.
T Consensus 154 v~~~~~l~~~~~~~~~l~-~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~~~~~ 232 (297)
T 2o57_A 154 IWSQDAFLHSPDKLKVFQ-ECARVLKPRGVMAITDPMKEDGIDKSSIQPILDRIKLHDMGSLGLYRSLAKECGLVTLRTF 232 (297)
T ss_dssp EEEESCGGGCSCHHHHHH-HHHHHEEEEEEEEEEEEEECTTCCGGGGHHHHHHHTCSSCCCHHHHHHHHHHTTEEEEEEE
T ss_pred EEecchhhhcCCHHHHHH-HHHHHcCCCeEEEEEEeccCCCCchHHHHHHHHHhcCCCCCCHHHHHHHHHHCCCeEEEEE
Confidence 999765 456777777 999999999999998742211111100 001 1112356688999998876
Q ss_pred ecC
Q 021911 282 TLE 284 (305)
Q Consensus 282 ~l~ 284 (305)
++.
T Consensus 233 ~~~ 235 (297)
T 2o57_A 233 SRP 235 (297)
T ss_dssp ECH
T ss_pred ECc
Confidence 543
|
| >3lcc_A Putative methyl chloride transferase; halide methyltransferase; HET: SAH; 1.80A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=99.51 E-value=2.1e-13 Score=119.00 Aligned_cols=132 Identities=17% Similarity=0.076 Sum_probs=93.9
Q ss_pred CCEEEEEecCCCccHHHHHhhhCCCcEEEEEeCChHHHHHHHHHHHcC---CCeEEEEccCCCCcccccCCCcEeEEEEe
Q 021911 144 GARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKR---TNVIPIIEDARHPAKYRMLVGMVDVIFSD 220 (305)
Q Consensus 144 g~~VLDlG~G~G~~t~~la~~~~~~~~V~avD~s~~~~~~l~~~a~~~---~nI~~~~~D~~~~~~~~~~~~~fD~V~~d 220 (305)
..+|||+|||+|.++..++.. ..+|+++|+|+.+++.+.+.+... .++.+++.|+.+... ..+||+|++.
T Consensus 67 ~~~vLDiGcG~G~~~~~l~~~---~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~----~~~fD~v~~~ 139 (235)
T 3lcc_A 67 LGRALVPGCGGGHDVVAMASP---ERFVVGLDISESALAKANETYGSSPKAEYFSFVKEDVFTWRP----TELFDLIFDY 139 (235)
T ss_dssp CEEEEEETCTTCHHHHHHCBT---TEEEEEECSCHHHHHHHHHHHTTSGGGGGEEEECCCTTTCCC----SSCEEEEEEE
T ss_pred CCCEEEeCCCCCHHHHHHHhC---CCeEEEEECCHHHHHHHHHHhhccCCCcceEEEECchhcCCC----CCCeeEEEEC
Confidence 359999999999999998764 468999999996666655555432 469999999988652 3599999986
Q ss_pred CC---Ch--hHHHHHHHHHhccCCCCcEEEEEEcccccCCCCchhhhHHHH-HHHHHHCCCcEeEEeec
Q 021911 221 VA---QP--DQARILALNASYFLKAGGHFVISIKANCIDSTVPAEAVFQSE-VKKLQQDQFKPFEQVTL 283 (305)
Q Consensus 221 ~~---~~--~~~~~l~~~a~~~LkpGG~lv~s~~~~~i~~~~~~~~v~~~~-~~~l~~~Gf~~~e~~~l 283 (305)
.. .+ +...++. ++.++|||||+|++............+.....++ .+.|++.||+++++...
T Consensus 140 ~~l~~~~~~~~~~~l~-~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~~~~~ 207 (235)
T 3lcc_A 140 VFFCAIEPEMRPAWAK-SMYELLKPDGELITLMYPITDHVGGPPYKVDVSTFEEVLVPIGFKAVSVEEN 207 (235)
T ss_dssp SSTTTSCGGGHHHHHH-HHHHHEEEEEEEEEEECCCSCCCSCSSCCCCHHHHHHHHGGGTEEEEEEEEC
T ss_pred hhhhcCCHHHHHHHHH-HHHHHCCCCcEEEEEEecccccCCCCCccCCHHHHHHHHHHcCCeEEEEEec
Confidence 65 12 5666776 9999999999999987432211111111122233 45668899999886643
|
| >3jwg_A HEN1, methyltransferase type 12; 1.90A {Clostridium thermocellum} PDB: 3jwi_A | Back alignment and structure |
|---|
Probab=99.51 E-value=4.1e-13 Score=115.74 Aligned_cols=120 Identities=11% Similarity=-0.051 Sum_probs=83.7
Q ss_pred cCchhhHHHHHHHccccccCCCCCCEEEEEecCCCccHHHHHhhhCCCcEEEEEeCChHHHHHHHHHHHcC-------CC
Q 021911 121 WNPFRSKLAAAVLGGVDNIWIKPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKR-------TN 193 (305)
Q Consensus 121 ~~~~~s~l~a~ll~~l~~~~~~~g~~VLDlG~G~G~~t~~la~~~~~~~~V~avD~s~~~~~~l~~~a~~~-------~n 193 (305)
+.+........++..+ ...++.+|||+|||+|.++..+++.. +..+|+++|+|+.+++.+.+.+... .+
T Consensus 10 ~~~~~~~~~~~l~~~l---~~~~~~~vLDiGcG~G~~~~~l~~~~-~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~ 85 (219)
T 3jwg_A 10 KLNLNQQRLGTVVAVL---KSVNAKKVIDLGCGEGNLLSLLLKDK-SFEQITGVDVSYSVLERAKDRLKIDRLPEMQRKR 85 (219)
T ss_dssp --CHHHHHHHHHHHHH---HHTTCCEEEEETCTTCHHHHHHHTST-TCCEEEEEESCHHHHHHHHHHHTGGGSCHHHHTT
T ss_pred CCcchHHHHHHHHHHH---hhcCCCEEEEecCCCCHHHHHHHhcC-CCCEEEEEECCHHHHHHHHHHHHhhccccccCcc
Confidence 3333444444443333 34567899999999999999999874 4569999999996655555544332 28
Q ss_pred eEEEEccCCCCcccccCCCcEeEEEEeCC---Ch--hHHHHHHHHHhccCCCCcEEEEEE
Q 021911 194 VIPIIEDARHPAKYRMLVGMVDVIFSDVA---QP--DQARILALNASYFLKAGGHFVISI 248 (305)
Q Consensus 194 I~~~~~D~~~~~~~~~~~~~fD~V~~d~~---~~--~~~~~l~~~a~~~LkpGG~lv~s~ 248 (305)
+.+++.|+...+. ...+||+|++... .+ +...++. ++.++|||||.|++..
T Consensus 86 v~~~~~d~~~~~~---~~~~fD~V~~~~~l~~~~~~~~~~~l~-~~~~~LkpgG~~i~~~ 141 (219)
T 3jwg_A 86 ISLFQSSLVYRDK---RFSGYDAATVIEVIEHLDENRLQAFEK-VLFEFTRPQTVIVSTP 141 (219)
T ss_dssp EEEEECCSSSCCG---GGTTCSEEEEESCGGGCCHHHHHHHHH-HHHTTTCCSEEEEEEE
T ss_pred eEEEeCccccccc---ccCCCCEEEEHHHHHhCCHHHHHHHHH-HHHHhhCCCEEEEEcc
Confidence 9999999965542 2478999998665 22 3356666 9999999999665544
|
| >3ocj_A Putative exported protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: PLM; 1.39A {Bordetella parapertussis} | Back alignment and structure |
|---|
Probab=99.51 E-value=8.3e-14 Score=126.72 Aligned_cols=151 Identities=15% Similarity=0.145 Sum_probs=102.9
Q ss_pred CCCCCCEEEEEecCCCccHHHHHhhhCCCcEEEEEeCChHHHHHHHHHHHcC---CCeEEEEccCCCCcccccCCCcEeE
Q 021911 140 WIKPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKR---TNVIPIIEDARHPAKYRMLVGMVDV 216 (305)
Q Consensus 140 ~~~~g~~VLDlG~G~G~~t~~la~~~~~~~~V~avD~s~~~~~~l~~~a~~~---~nI~~~~~D~~~~~~~~~~~~~fD~ 216 (305)
.++++.+|||+|||+|.++..++....+..+|+++|+|+.++..+.+.+... .+|.+++.|+.+.+. ..+||+
T Consensus 115 ~l~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~----~~~fD~ 190 (305)
T 3ocj_A 115 HLRPGCVVASVPCGWMSELLALDYSACPGVQLVGIDYDPEALDGATRLAAGHALAGQITLHRQDAWKLDT----REGYDL 190 (305)
T ss_dssp HCCTTCEEEETTCTTCHHHHTSCCTTCTTCEEEEEESCHHHHHHHHHHHTTSTTGGGEEEEECCGGGCCC----CSCEEE
T ss_pred hCCCCCEEEEecCCCCHHHHHHHHhcCCCCeEEEEECCHHHHHHHHHHHHhcCCCCceEEEECchhcCCc----cCCeEE
Confidence 4678899999999999999999744446789999999996666655555443 349999999987642 279999
Q ss_pred EEEeCC---ChhHH---HHHHHHHhccCCCCcEEEEEEcccccC----C-----CCch-------------------h-h
Q 021911 217 IFSDVA---QPDQA---RILALNASYFLKAGGHFVISIKANCID----S-----TVPA-------------------E-A 261 (305)
Q Consensus 217 V~~d~~---~~~~~---~~l~~~a~~~LkpGG~lv~s~~~~~i~----~-----~~~~-------------------~-~ 261 (305)
|+++.+ .++.. +++. ++.++|||||+|++++...... . .... . .
T Consensus 191 v~~~~~~~~~~~~~~~~~~l~-~~~~~LkpgG~l~i~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 269 (305)
T 3ocj_A 191 LTSNGLNIYEPDDARVTELYR-RFWQALKPGGALVTSFLTPPPALSPDSPWDMQAIDPHDLQLQQLVFTRLIQPRWNALR 269 (305)
T ss_dssp EECCSSGGGCCCHHHHHHHHH-HHHHHEEEEEEEEEECCCCCTTTCTTCCCCGGGSCHHHHHHHHHHHHHTTCCSCCCCC
T ss_pred EEECChhhhcCCHHHHHHHHH-HHHHhcCCCeEEEEEecCCCCcccccccceeeccccchhhhhhhHHHHHHhhhhhccC
Confidence 999765 22333 2455 9999999999999987322100 0 0000 0 0
Q ss_pred hHHHHHHHHHHCCCcEeEEeecCCCCCceEEEEEEE
Q 021911 262 VFQSEVKKLQQDQFKPFEQVTLEPFERDHACVVGGY 297 (305)
Q Consensus 262 v~~~~~~~l~~~Gf~~~e~~~l~p~~~~~~~vv~~~ 297 (305)
...+..+.|+++||++++.... ....+.+++++|
T Consensus 270 ~~~~~~~~l~~aGF~~v~~~~~--~~~~~~~v~a~K 303 (305)
T 3ocj_A 270 THAQTRAQLEEAGFTDLRFEDD--RARLFPTVIARK 303 (305)
T ss_dssp CHHHHHHHHHHTTCEEEEEECC--TTSSSCEEEEEC
T ss_pred CHHHHHHHHHHCCCEEEEEEcc--cCceeeEEEEec
Confidence 1122246668999999887752 223355666665
|
| >2i62_A Nicotinamide N-methyltransferase; structural genomics, structural genomics consortium, SGC; HET: SAH; 1.80A {Mus musculus} PDB: 2iip_A* 3rod_A* | Back alignment and structure |
|---|
Probab=99.51 E-value=4e-13 Score=118.75 Aligned_cols=157 Identities=11% Similarity=0.089 Sum_probs=102.0
Q ss_pred CCCCCEEEEEecCCCccHHHHHhhhCCCcEEEEEeCChHHHHHHHHHHHcCCC---------------------------
Q 021911 141 IKPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKRTN--------------------------- 193 (305)
Q Consensus 141 ~~~g~~VLDlG~G~G~~t~~la~~~~~~~~V~avD~s~~~~~~l~~~a~~~~n--------------------------- 193 (305)
..++.+|||+|||+|.++..++... . .+|+++|+|+.++..+.+.+....+
T Consensus 54 ~~~~~~vLDlGcG~G~~~~~l~~~~-~-~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 131 (265)
T 2i62_A 54 AVKGELLIDIGSGPTIYQLLSACES-F-TEIIVSDYTDQNLWELQKWLKKEPGAFDWSPVVTYVCDLEGNRMKGPEKEEK 131 (265)
T ss_dssp SCCEEEEEEESCTTCCGGGTTGGGT-E-EEEEEEESCHHHHHHHHHHHTTCTTCCCCHHHHHHHHHHTTTCSCHHHHHHH
T ss_pred ccCCCEEEEECCCccHHHHHHhhcc-c-CeEEEecCCHHHHHHHHHHHhcCCccccchhhhhhhhcccccccchHHHHHH
Confidence 3567899999999999999988762 2 4899999999666555554443221
Q ss_pred ----e-EEEEccCCCCccc-ccCCCcEeEEEEeCCCh-------hHHHHHHHHHhccCCCCcEEEEEEcccccCCCC-c-
Q 021911 194 ----V-IPIIEDARHPAKY-RMLVGMVDVIFSDVAQP-------DQARILALNASYFLKAGGHFVISIKANCIDSTV-P- 258 (305)
Q Consensus 194 ----I-~~~~~D~~~~~~~-~~~~~~fD~V~~d~~~~-------~~~~~l~~~a~~~LkpGG~lv~s~~~~~i~~~~-~- 258 (305)
| .+++.|+...... .....+||+|++..... +...++. ++.++|||||+|++++......... .
T Consensus 132 l~~~v~~~~~~d~~~~~~~~~~~~~~fD~v~~~~~l~~~~~~~~~~~~~l~-~~~~~LkpgG~li~~~~~~~~~~~~~~~ 210 (265)
T 2i62_A 132 LRRAIKQVLKCDVTQSQPLGGVSLPPADCLLSTLCLDAACPDLPAYRTALR-NLGSLLKPGGFLVMVDALKSSYYMIGEQ 210 (265)
T ss_dssp HHHHEEEEEECCTTSSSTTTTCCCCCEEEEEEESCHHHHCSSHHHHHHHHH-HHHTTEEEEEEEEEEEESSCCEEEETTE
T ss_pred hhhhheeEEEeeeccCCCCCccccCCccEEEEhhhhhhhcCChHHHHHHHH-HHHhhCCCCcEEEEEecCCCceEEcCCc
Confidence 7 8999999876432 11226899999976622 5566666 9999999999999987322100000 0
Q ss_pred --h-hhhHH-HHHHHHHHCCCcEeEEeecCC-C-----C-CceEEEEEEEcCC
Q 021911 259 --A-EAVFQ-SEVKKLQQDQFKPFEQVTLEP-F-----E-RDHACVVGGYRMP 300 (305)
Q Consensus 259 --~-~~v~~-~~~~~l~~~Gf~~~e~~~l~p-~-----~-~~~~~vv~~~~~~ 300 (305)
. ...-. ...+.|+++||++++...... + . ...++++++|...
T Consensus 211 ~~~~~~~~~~~~~~~l~~aGf~~~~~~~~~~~~~~~~~~~~~~~~~~a~K~~~ 263 (265)
T 2i62_A 211 KFSSLPLGWETVRDAVEEAGYTIEQFEVISQNYSSTTSNNEGLFSLVGRKPGR 263 (265)
T ss_dssp EEECCCCCHHHHHHHHHHTTCEEEEEEEECCCCCTTTBCCCCEEEEEEECCC-
T ss_pred cccccccCHHHHHHHHHHCCCEEEEEEEecccCCccccccceEEEEEeccccc
Confidence 0 00111 224667889999988775431 1 1 2345666666543
|
| >1ve3_A Hypothetical protein PH0226; dimer, riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function, NPPSFA; HET: SAM; 2.10A {Pyrococcus horikoshii} SCOP: c.66.1.43 | Back alignment and structure |
|---|
Probab=99.51 E-value=3.8e-13 Score=116.17 Aligned_cols=102 Identities=24% Similarity=0.249 Sum_probs=80.5
Q ss_pred CCCCCEEEEEecCCCccHHHHHhhhCCCcEEEEEeCChHHHHHHHHHHHcC-CCeEEEEccCCCCcccccCCCcEeEEEE
Q 021911 141 IKPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKR-TNVIPIIEDARHPAKYRMLVGMVDVIFS 219 (305)
Q Consensus 141 ~~~g~~VLDlG~G~G~~t~~la~~~~~~~~V~avD~s~~~~~~l~~~a~~~-~nI~~~~~D~~~~~~~~~~~~~fD~V~~ 219 (305)
+.++.+|||+|||+|.++..+++.. + +|+++|+|+.+++.+.+.++.. .++.+++.|+.+.+ ....+||+|++
T Consensus 36 ~~~~~~vLDlG~G~G~~~~~l~~~~-~--~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~d~~~~~---~~~~~~D~v~~ 109 (227)
T 1ve3_A 36 MKKRGKVLDLACGVGGFSFLLEDYG-F--EVVGVDISEDMIRKAREYAKSRESNVEFIVGDARKLS---FEDKTFDYVIF 109 (227)
T ss_dssp CCSCCEEEEETCTTSHHHHHHHHTT-C--EEEEEESCHHHHHHHHHHHHHTTCCCEEEECCTTSCC---SCTTCEEEEEE
T ss_pred cCCCCeEEEEeccCCHHHHHHHHcC-C--EEEEEECCHHHHHHHHHHHHhcCCCceEEECchhcCC---CCCCcEEEEEE
Confidence 4457899999999999999999873 3 8999999996666655555443 68999999998754 12468999999
Q ss_pred eCC--C---hhHHHHHHHHHhccCCCCcEEEEEEc
Q 021911 220 DVA--Q---PDQARILALNASYFLKAGGHFVISIK 249 (305)
Q Consensus 220 d~~--~---~~~~~~l~~~a~~~LkpGG~lv~s~~ 249 (305)
+.+ . ++...++. ++.++|||||+|++.+.
T Consensus 110 ~~~~~~~~~~~~~~~l~-~~~~~L~~gG~l~~~~~ 143 (227)
T 1ve3_A 110 IDSIVHFEPLELNQVFK-EVRRVLKPSGKFIMYFT 143 (227)
T ss_dssp ESCGGGCCHHHHHHHHH-HHHHHEEEEEEEEEEEE
T ss_pred cCchHhCCHHHHHHHHH-HHHHHcCCCcEEEEEec
Confidence 776 2 34556666 99999999999999864
|
| >3hem_A Cyclopropane-fatty-acyl-phospholipid synthase 2; protein-ligand complex, cytoplasm, lipid synthesis, methyltransferase; HET: D22; 2.39A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 1kpi_A* | Back alignment and structure |
|---|
Probab=99.51 E-value=2.2e-13 Score=123.60 Aligned_cols=104 Identities=17% Similarity=0.117 Sum_probs=83.0
Q ss_pred cccCCCCCCEEEEEecCCCccHHHHHhhhCCCcEEEEEeCChHHHHHHHHHHHcC---CCeEEEEccCCCCcccccCCCc
Q 021911 137 DNIWIKPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKR---TNVIPIIEDARHPAKYRMLVGM 213 (305)
Q Consensus 137 ~~~~~~~g~~VLDlG~G~G~~t~~la~~~~~~~~V~avD~s~~~~~~l~~~a~~~---~nI~~~~~D~~~~~~~~~~~~~ 213 (305)
+.+.++++.+|||||||+|.++..+++.++ .+|+++|+|+..+..+.+.+... .+|.+++.|+.+. ..+
T Consensus 66 ~~~~~~~~~~vLDiGcG~G~~~~~la~~~~--~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~------~~~ 137 (302)
T 3hem_A 66 DKLNLEPGMTLLDIGCGWGSTMRHAVAEYD--VNVIGLTLSENQYAHDKAMFDEVDSPRRKEVRIQGWEEF------DEP 137 (302)
T ss_dssp HTTCCCTTCEEEEETCTTSHHHHHHHHHHC--CEEEEEECCHHHHHHHHHHHHHSCCSSCEEEEECCGGGC------CCC
T ss_pred HHcCCCCcCEEEEeeccCcHHHHHHHHhCC--CEEEEEECCHHHHHHHHHHHHhcCCCCceEEEECCHHHc------CCC
Confidence 334678899999999999999999999874 68999999996666665555543 3799999999764 478
Q ss_pred EeEEEEeCC---C---------hhHHHHHHHHHhccCCCCcEEEEEEc
Q 021911 214 VDVIFSDVA---Q---------PDQARILALNASYFLKAGGHFVISIK 249 (305)
Q Consensus 214 fD~V~~d~~---~---------~~~~~~l~~~a~~~LkpGG~lv~s~~ 249 (305)
||+|++... . .+...++. ++.++|||||+|++.+.
T Consensus 138 fD~v~~~~~~~~~~d~~~~~~~~~~~~~l~-~~~~~LkpgG~l~i~~~ 184 (302)
T 3hem_A 138 VDRIVSLGAFEHFADGAGDAGFERYDTFFK-KFYNLTPDDGRMLLHTI 184 (302)
T ss_dssp CSEEEEESCGGGTTCCSSCCCTTHHHHHHH-HHHHSSCTTCEEEEEEE
T ss_pred ccEEEEcchHHhcCccccccchhHHHHHHH-HHHHhcCCCcEEEEEEE
Confidence 999999655 1 22356666 99999999999999873
|
| >4htf_A S-adenosylmethionine-dependent methyltransferase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MSE SAM; 1.60A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.51 E-value=2.6e-13 Score=121.85 Aligned_cols=101 Identities=22% Similarity=0.213 Sum_probs=81.8
Q ss_pred CCCEEEEEecCCCccHHHHHhhhCCCcEEEEEeCChHHHHHHHHHHHcC---CCeEEEEccCCCCcccccCCCcEeEEEE
Q 021911 143 PGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKR---TNVIPIIEDARHPAKYRMLVGMVDVIFS 219 (305)
Q Consensus 143 ~g~~VLDlG~G~G~~t~~la~~~~~~~~V~avD~s~~~~~~l~~~a~~~---~nI~~~~~D~~~~~~~~~~~~~fD~V~~ 219 (305)
++.+|||+|||+|.++..+++. ..+|+++|+|+.++..+.+.++.. +++.+++.|+.+.+.. ...+||+|++
T Consensus 68 ~~~~vLDiGcG~G~~~~~l~~~---~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~--~~~~fD~v~~ 142 (285)
T 4htf_A 68 QKLRVLDAGGGEGQTAIKMAER---GHQVILCDLSAQMIDRAKQAAEAKGVSDNMQFIHCAAQDVASH--LETPVDLILF 142 (285)
T ss_dssp SCCEEEEETCTTCHHHHHHHHT---TCEEEEEESCHHHHHHHHHHHHC-CCGGGEEEEESCGGGTGGG--CSSCEEEEEE
T ss_pred CCCEEEEeCCcchHHHHHHHHC---CCEEEEEECCHHHHHHHHHHHHhcCCCcceEEEEcCHHHhhhh--cCCCceEEEE
Confidence 3689999999999999999987 358999999996665555555443 5799999999877532 3579999999
Q ss_pred eCC---ChhHHHHHHHHHhccCCCCcEEEEEEc
Q 021911 220 DVA---QPDQARILALNASYFLKAGGHFVISIK 249 (305)
Q Consensus 220 d~~---~~~~~~~l~~~a~~~LkpGG~lv~s~~ 249 (305)
... .++...++. ++.++|||||+|++++.
T Consensus 143 ~~~l~~~~~~~~~l~-~~~~~LkpgG~l~~~~~ 174 (285)
T 4htf_A 143 HAVLEWVADPRSVLQ-TLWSVLRPGGVLSLMFY 174 (285)
T ss_dssp ESCGGGCSCHHHHHH-HHHHTEEEEEEEEEEEE
T ss_pred CchhhcccCHHHHHH-HHHHHcCCCeEEEEEEe
Confidence 766 456777777 99999999999999873
|
| >3fpf_A Mtnas, putative uncharacterized protein; thermonicotianamine, nicotianamine, biosynthetic protein; HET: TNA MTA; 1.66A {Methanothermobacter thermautotrophicusorganism_taxid} PDB: 3fpe_A* 3fph_A* 3fpg_A* 3fpj_A* 3o31_A* | Back alignment and structure |
|---|
Probab=99.51 E-value=1.2e-13 Score=125.16 Aligned_cols=144 Identities=13% Similarity=0.084 Sum_probs=99.1
Q ss_pred CCCCCCEEEEEecCCCccHHHHHhhhCCCcEEEEEeCChHHHHHHHHHHHcC--CCeEEEEccCCCCcccccCCCcEeEE
Q 021911 140 WIKPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKR--TNVIPIIEDARHPAKYRMLVGMVDVI 217 (305)
Q Consensus 140 ~~~~g~~VLDlG~G~G~~t~~la~~~~~~~~V~avD~s~~~~~~l~~~a~~~--~nI~~~~~D~~~~~~~~~~~~~fD~V 217 (305)
.++++++|||+|||+|.++..++... +.++|++||+|+.+++.+.+.+++. .+|+++++|+.+.+ ..+||+|
T Consensus 119 ~l~~g~rVLDIGcG~G~~ta~~lA~~-~ga~V~gIDis~~~l~~Ar~~~~~~gl~~v~~v~gDa~~l~-----d~~FDvV 192 (298)
T 3fpf_A 119 RFRRGERAVFIGGGPLPLTGILLSHV-YGMRVNVVEIEPDIAELSRKVIEGLGVDGVNVITGDETVID-----GLEFDVL 192 (298)
T ss_dssp TCCTTCEEEEECCCSSCHHHHHHHHT-TCCEEEEEESSHHHHHHHHHHHHHHTCCSEEEEESCGGGGG-----GCCCSEE
T ss_pred CCCCcCEEEEECCCccHHHHHHHHHc-cCCEEEEEECCHHHHHHHHHHHHhcCCCCeEEEECchhhCC-----CCCcCEE
Confidence 67899999999999998775544332 4579999999996665555554432 68999999998753 4789999
Q ss_pred EEeCCChhHHHHHHHHHhccCCCCcEEEEEEccc--c-cCCCCchhhhHHHHHHHHHHCCCcEeEEeecCCCCCceEEEE
Q 021911 218 FSDVAQPDQARILALNASYFLKAGGHFVISIKAN--C-IDSTVPAEAVFQSEVKKLQQDQFKPFEQVTLEPFERDHACVV 294 (305)
Q Consensus 218 ~~d~~~~~~~~~l~~~a~~~LkpGG~lv~s~~~~--~-i~~~~~~~~v~~~~~~~l~~~Gf~~~e~~~l~p~~~~~~~vv 294 (305)
+++...++..+++. ++.++|||||+|++..... . +.....+. ...+|+....+.-... ....+++
T Consensus 193 ~~~a~~~d~~~~l~-el~r~LkPGG~Lvv~~~~~~r~~l~~~v~~~----------~~~gf~~~~~~~p~~~-v~N~vv~ 260 (298)
T 3fpf_A 193 MVAALAEPKRRVFR-NIHRYVDTETRIIYRTYTGMRAILYAPVSDD----------DITGFRRAGVVLPSGK-VNNTSVL 260 (298)
T ss_dssp EECTTCSCHHHHHH-HHHHHCCTTCEEEEEECCGGGGGSSCCCCTG----------GGTTEEEEEEECCCTT-CCCEEEE
T ss_pred EECCCccCHHHHHH-HHHHHcCCCcEEEEEcCcchhhhccccCChh----------hhhhhhheeEECCCCC-cCcEEEE
Confidence 99888888888888 9999999999999986211 1 11111111 1247877655433222 2455677
Q ss_pred EEEcCCC
Q 021911 295 GGYRMPK 301 (305)
Q Consensus 295 ~~~~~~~ 301 (305)
+.+...+
T Consensus 261 a~k~~~~ 267 (298)
T 3fpf_A 261 VFKCPDK 267 (298)
T ss_dssp EEECC--
T ss_pred EEccCCc
Confidence 7665554
|
| >1dus_A MJ0882; hypothetical protein, methanococcus jannaschii, structural genomics, BSGC structure funded by NIH; 1.80A {Methanocaldococcus jannaschii} SCOP: c.66.1.4 | Back alignment and structure |
|---|
Probab=99.51 E-value=2.8e-13 Score=113.63 Aligned_cols=101 Identities=17% Similarity=0.156 Sum_probs=81.1
Q ss_pred CCCCCCEEEEEecCCCccHHHHHhhhCCCcEEEEEeCChHHHHHHHHHHHcC--CC--eEEEEccCCCCcccccCCCcEe
Q 021911 140 WIKPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKR--TN--VIPIIEDARHPAKYRMLVGMVD 215 (305)
Q Consensus 140 ~~~~g~~VLDlG~G~G~~t~~la~~~~~~~~V~avD~s~~~~~~l~~~a~~~--~n--I~~~~~D~~~~~~~~~~~~~fD 215 (305)
...++.+|||+|||+|.++..++.. ..+|+++|+|+.++..+.+.+... .+ +.+++.|+.+... ..+||
T Consensus 49 ~~~~~~~vLdiG~G~G~~~~~~~~~---~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~~~----~~~~D 121 (194)
T 1dus_A 49 VVDKDDDILDLGCGYGVIGIALADE---VKSTTMADINRRAIKLAKENIKLNNLDNYDIRVVHSDLYENVK----DRKYN 121 (194)
T ss_dssp CCCTTCEEEEETCTTSHHHHHHGGG---SSEEEEEESCHHHHHHHHHHHHHTTCTTSCEEEEECSTTTTCT----TSCEE
T ss_pred ccCCCCeEEEeCCCCCHHHHHHHHc---CCeEEEEECCHHHHHHHHHHHHHcCCCccceEEEECchhcccc----cCCce
Confidence 4568899999999999999999987 359999999997766666555443 44 9999999977532 46899
Q ss_pred EEEEeCCC----hhHHHHHHHHHhccCCCCcEEEEEE
Q 021911 216 VIFSDVAQ----PDQARILALNASYFLKAGGHFVISI 248 (305)
Q Consensus 216 ~V~~d~~~----~~~~~~l~~~a~~~LkpGG~lv~s~ 248 (305)
+|+++++. .+...++. ++.++|||+|.+++++
T Consensus 122 ~v~~~~~~~~~~~~~~~~l~-~~~~~L~~gG~l~~~~ 157 (194)
T 1dus_A 122 KIITNPPIRAGKEVLHRIIE-EGKELLKDNGEIWVVI 157 (194)
T ss_dssp EEEECCCSTTCHHHHHHHHH-HHHHHEEEEEEEEEEE
T ss_pred EEEECCCcccchhHHHHHHH-HHHHHcCCCCEEEEEE
Confidence 99999873 23455665 9999999999999997
|
| >1y8c_A S-adenosylmethionine-dependent methyltransferase; structural genomics, protein structure initiative, PSI; 2.50A {Clostridium acetobutylicum} SCOP: c.66.1.43 | Back alignment and structure |
|---|
Probab=99.51 E-value=4.1e-13 Score=117.07 Aligned_cols=100 Identities=18% Similarity=0.166 Sum_probs=78.2
Q ss_pred CCCCEEEEEecCCCccHHHHHhhhCCCcEEEEEeCChHHHHHHHHHHHcC-CCeEEEEccCCCCcccccCCCcEeEEEEe
Q 021911 142 KPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKR-TNVIPIIEDARHPAKYRMLVGMVDVIFSD 220 (305)
Q Consensus 142 ~~g~~VLDlG~G~G~~t~~la~~~~~~~~V~avD~s~~~~~~l~~~a~~~-~nI~~~~~D~~~~~~~~~~~~~fD~V~~d 220 (305)
.++.+|||+|||+|.++..+++. ..+|+++|+|+.++..+.+.+... .++.+++.|+...+. ..+||+|++.
T Consensus 36 ~~~~~vLdiG~G~G~~~~~l~~~---~~~~~~~D~s~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~----~~~fD~v~~~ 108 (246)
T 1y8c_A 36 LVFDDYLDLACGTGNLTENLCPK---FKNTWAVDLSQEMLSEAENKFRSQGLKPRLACQDISNLNI----NRKFDLITCC 108 (246)
T ss_dssp CCTTEEEEETCTTSTTHHHHGGG---SSEEEEECSCHHHHHHHHHHHHHTTCCCEEECCCGGGCCC----SCCEEEEEEC
T ss_pred CCCCeEEEeCCCCCHHHHHHHHC---CCcEEEEECCHHHHHHHHHHHhhcCCCeEEEecccccCCc----cCCceEEEEc
Confidence 36789999999999999999987 248999999996655555544433 379999999876541 3789999997
Q ss_pred C-C---C---hhHHHHHHHHHhccCCCCcEEEEEEc
Q 021911 221 V-A---Q---PDQARILALNASYFLKAGGHFVISIK 249 (305)
Q Consensus 221 ~-~---~---~~~~~~l~~~a~~~LkpGG~lv~s~~ 249 (305)
. . . ++...++. ++.++|||||+|++++.
T Consensus 109 ~~~l~~~~~~~~~~~~l~-~~~~~L~pgG~l~~~~~ 143 (246)
T 1y8c_A 109 LDSTNYIIDSDDLKKYFK-AVSNHLKEGGVFIFDIN 143 (246)
T ss_dssp TTGGGGCCSHHHHHHHHH-HHHTTEEEEEEEEEEEE
T ss_pred CccccccCCHHHHHHHHH-HHHHhcCCCcEEEEEec
Confidence 6 3 2 45566666 99999999999999763
|
| >3hp7_A Hemolysin, putative; structural genomics, APC64019, PSI-2, protein STR initiative, midwest center for structural genomics, MCSG; HET: MSE; 1.53A {Streptococcus thermophilus} | Back alignment and structure |
|---|
Probab=99.51 E-value=9.5e-14 Score=125.71 Aligned_cols=167 Identities=14% Similarity=0.101 Sum_probs=107.0
Q ss_pred chhhHHHHHHHccccccCCC-CCCEEEEEecCCCccHHHHHhhhCCCcEEEEEeCChHHHHHHHHHH-HcCCCeEEE-Ec
Q 021911 123 PFRSKLAAAVLGGVDNIWIK-PGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMA-KKRTNVIPI-IE 199 (305)
Q Consensus 123 ~~~s~l~a~ll~~l~~~~~~-~g~~VLDlG~G~G~~t~~la~~~~~~~~V~avD~s~~~~~~l~~~a-~~~~nI~~~-~~ 199 (305)
+|.|.-...+...|+.+.+. ++.+|||+|||||.++..+++. ...+|||||+|+ .|++.+ +..+++... ..
T Consensus 64 ~yvsrg~~Kl~~~l~~~~~~~~g~~vLDiGcGTG~~t~~L~~~--ga~~V~aVDvs~----~mL~~a~r~~~rv~~~~~~ 137 (291)
T 3hp7_A 64 RYVSRGGLKLEKALAVFNLSVEDMITIDIGASTGGFTDVMLQN--GAKLVYAVDVGT----NQLVWKLRQDDRVRSMEQY 137 (291)
T ss_dssp CSSSTTHHHHHHHHHHTTCCCTTCEEEEETCTTSHHHHHHHHT--TCSEEEEECSSS----SCSCHHHHTCTTEEEECSC
T ss_pred ccccchHHHHHHHHHhcCCCccccEEEecCCCccHHHHHHHhC--CCCEEEEEECCH----HHHHHHHHhCcccceeccc
Confidence 45565555555555555554 5689999999999999999987 456999999999 555553 333455433 34
Q ss_pred cCCCCcccccCCCcEeEEEEeCCChhHHHHHHHHHhccCCCCcEEEEEEcccccCCCC---------chhh---hHHHHH
Q 021911 200 DARHPAKYRMLVGMVDVIFSDVAQPDQARILALNASYFLKAGGHFVISIKANCIDSTV---------PAEA---VFQSEV 267 (305)
Q Consensus 200 D~~~~~~~~~~~~~fD~V~~d~~~~~~~~~l~~~a~~~LkpGG~lv~s~~~~~i~~~~---------~~~~---v~~~~~ 267 (305)
|++..........+||+|++|.+......+|. +++++|||||+|++.++........ ++.. ...+..
T Consensus 138 ni~~l~~~~l~~~~fD~v~~d~sf~sl~~vL~-e~~rvLkpGG~lv~lvkPqfe~~~~~~~~~G~vrd~~~~~~~~~~v~ 216 (291)
T 3hp7_A 138 NFRYAEPVDFTEGLPSFASIDVSFISLNLILP-ALAKILVDGGQVVALVKPQFEAGREQIGKNGIVRESSIHEKVLETVT 216 (291)
T ss_dssp CGGGCCGGGCTTCCCSEEEECCSSSCGGGTHH-HHHHHSCTTCEEEEEECGGGTSCGGGCC-CCCCCCHHHHHHHHHHHH
T ss_pred CceecchhhCCCCCCCEEEEEeeHhhHHHHHH-HHHHHcCcCCEEEEEECcccccChhhcCCCCccCCHHHHHHHHHHHH
Confidence 55444322222335999999999777777777 9999999999999987543311110 1111 222234
Q ss_pred HHHHHCCCcEeEEeecCCC----CCceEEEEEEE
Q 021911 268 KKLQQDQFKPFEQVTLEPF----ERDHACVVGGY 297 (305)
Q Consensus 268 ~~l~~~Gf~~~e~~~l~p~----~~~~~~vv~~~ 297 (305)
+.+.++||.+... ...|. -+-+|++-..+
T Consensus 217 ~~~~~~Gf~v~~~-~~spi~g~~gn~e~l~~~~~ 249 (291)
T 3hp7_A 217 AFAVDYGFSVKGL-DFSPIQGGHGNIEFLAHLEK 249 (291)
T ss_dssp HHHHHTTEEEEEE-EECSSCCGGGCCCEEEEEEE
T ss_pred HHHHHCCCEEEEE-EECCCCCCCcCHHHHHHhhh
Confidence 5668899998764 44454 23444444444
|
| >3orh_A Guanidinoacetate N-methyltransferase; structura genomics, structural genomics consortium, SGC; HET: SAH; 1.86A {Homo sapiens} PDB: 1xcj_A* 1xcl_A* 1p1c_A* 1p1b_A* 1khh_A* | Back alignment and structure |
|---|
Probab=99.51 E-value=3.8e-14 Score=124.59 Aligned_cols=135 Identities=21% Similarity=0.211 Sum_probs=92.6
Q ss_pred CCCCCEEEEEecCCCccHHHHHhhhCCCcEEEEEeCChHHHHHHHHHHHcC-CCeEEEEccCCCCcccccCCCcEeEEEE
Q 021911 141 IKPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKR-TNVIPIIEDARHPAKYRMLVGMVDVIFS 219 (305)
Q Consensus 141 ~~~g~~VLDlG~G~G~~t~~la~~~~~~~~V~avD~s~~~~~~l~~~a~~~-~nI~~~~~D~~~~~~~~~~~~~fD~V~~ 219 (305)
..++.+|||||||+|..+.++++.. ..+|++||+|+..++.+.+.++.. .++.++..|+...... ....+||.|+.
T Consensus 58 ~~~G~rVLdiG~G~G~~~~~~~~~~--~~~v~~id~~~~~~~~a~~~~~~~~~~~~~~~~~a~~~~~~-~~~~~FD~i~~ 134 (236)
T 3orh_A 58 SSKGGRVLEVGFGMAIAASKVQEAP--IDEHWIIECNDGVFQRLRDWAPRQTHKVIPLKGLWEDVAPT-LPDGHFDGILY 134 (236)
T ss_dssp TTTCEEEEEECCTTSHHHHHHTTSC--EEEEEEEECCHHHHHHHHHHGGGCSSEEEEEESCHHHHGGG-SCTTCEEEEEE
T ss_pred ccCCCeEEEECCCccHHHHHHHHhC--CcEEEEEeCCHHHHHHHHHHHhhCCCceEEEeehHHhhccc-ccccCCceEEE
Confidence 4678999999999999999998863 258999999996666665555544 5688888887654322 24578999998
Q ss_pred eCC--------ChhHHHHHHHHHhccCCCCcEEEEEEcccc---cCC-CCchhhhHHHH-HHHHHHCCCcEeE
Q 021911 220 DVA--------QPDQARILALNASYFLKAGGHFVISIKANC---IDS-TVPAEAVFQSE-VKKLQQDQFKPFE 279 (305)
Q Consensus 220 d~~--------~~~~~~~l~~~a~~~LkpGG~lv~s~~~~~---i~~-~~~~~~v~~~~-~~~l~~~Gf~~~e 279 (305)
|.. .++...++. +++++|||||+|++...... ... ......++.+. ...|.++||+.++
T Consensus 135 D~~~~~~~~~~~~~~~~~~~-e~~rvLkPGG~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~eaGF~~~~ 206 (236)
T 3orh_A 135 DTYPLSEETWHTHQFNFIKN-HAFRLLKPGGVLTYCNLTSWGELMKSKYSDITIMFEETQVPALLEAGFRREN 206 (236)
T ss_dssp CCCCCBGGGTTTHHHHHHHH-THHHHEEEEEEEEECCHHHHHHHTTTTCSCHHHHHHHHTHHHHHHHTCCGGG
T ss_pred eeeecccchhhhcchhhhhh-hhhheeCCCCEEEEEecCCchhhhhhhhhhhhhhhHHHHHHHHHHcCCeEEE
Confidence 765 345666676 99999999999988641100 111 11122233332 4567788998643
|
| >2p35_A Trans-aconitate 2-methyltransferase; SAM dependent methyltrans agrobacterium tumefaciens, structural genomics, PSI-2; HET: SAH; 1.95A {Agrobacterium tumefaciens str} | Back alignment and structure |
|---|
Probab=99.50 E-value=1.2e-13 Score=121.73 Aligned_cols=117 Identities=18% Similarity=0.243 Sum_probs=92.0
Q ss_pred ecCchhhHHHHHHHccccccCCCCCCEEEEEecCCCccHHHHHhhhCCCcEEEEEeCChHHHHHHHHHHHcC-CCeEEEE
Q 021911 120 IWNPFRSKLAAAVLGGVDNIWIKPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKR-TNVIPII 198 (305)
Q Consensus 120 ~~~~~~s~l~a~ll~~l~~~~~~~g~~VLDlG~G~G~~t~~la~~~~~~~~V~avD~s~~~~~~l~~~a~~~-~nI~~~~ 198 (305)
.+..........++..+ .+.++.+|||+|||+|.++..+++.+ +..+|+++|+|+ .+++.++++ +++.+++
T Consensus 13 ~~~~~~~~~~~~l~~~~---~~~~~~~vLdiG~G~G~~~~~l~~~~-~~~~v~~~D~s~----~~~~~a~~~~~~~~~~~ 84 (259)
T 2p35_A 13 KFEDERTRPARDLLAQV---PLERVLNGYDLGCGPGNSTELLTDRY-GVNVITGIDSDD----DMLEKAADRLPNTNFGK 84 (259)
T ss_dssp CCCCGGGHHHHHHHTTC---CCSCCSSEEEETCTTTHHHHHHHHHH-CTTSEEEEESCH----HHHHHHHHHSTTSEEEE
T ss_pred HHHHHHHHHHHHHHHhc---CCCCCCEEEEecCcCCHHHHHHHHhC-CCCEEEEEECCH----HHHHHHHHhCCCcEEEE
Confidence 33333555555665433 46778999999999999999999987 467899999999 555555543 6899999
Q ss_pred ccCCCCcccccCCCcEeEEEEeCC---ChhHHHHHHHHHhccCCCCcEEEEEEc
Q 021911 199 EDARHPAKYRMLVGMVDVIFSDVA---QPDQARILALNASYFLKAGGHFVISIK 249 (305)
Q Consensus 199 ~D~~~~~~~~~~~~~fD~V~~d~~---~~~~~~~l~~~a~~~LkpGG~lv~s~~ 249 (305)
.|+.+.+ ...+||+|+++.. .++...++. ++.++|||||+|+++++
T Consensus 85 ~d~~~~~----~~~~fD~v~~~~~l~~~~~~~~~l~-~~~~~L~pgG~l~~~~~ 133 (259)
T 2p35_A 85 ADLATWK----PAQKADLLYANAVFQWVPDHLAVLS-QLMDQLESGGVLAVQMP 133 (259)
T ss_dssp CCTTTCC----CSSCEEEEEEESCGGGSTTHHHHHH-HHGGGEEEEEEEEEEEE
T ss_pred CChhhcC----ccCCcCEEEEeCchhhCCCHHHHHH-HHHHhcCCCeEEEEEeC
Confidence 9998765 2578999999776 457777787 99999999999999874
|
| >2xvm_A Tellurite resistance protein TEHB; antibiotic resistance, transferase; HET: SAH; 1.48A {Escherichia coli} PDB: 2xva_A* 4dq0_A* 2i6g_A* | Back alignment and structure |
|---|
Probab=99.50 E-value=2e-13 Score=115.40 Aligned_cols=100 Identities=19% Similarity=0.140 Sum_probs=79.4
Q ss_pred CCCCCEEEEEecCCCccHHHHHhhhCCCcEEEEEeCChHHHHHHHHHHHcC--CCeEEEEccCCCCcccccCCCcEeEEE
Q 021911 141 IKPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKR--TNVIPIIEDARHPAKYRMLVGMVDVIF 218 (305)
Q Consensus 141 ~~~g~~VLDlG~G~G~~t~~la~~~~~~~~V~avD~s~~~~~~l~~~a~~~--~nI~~~~~D~~~~~~~~~~~~~fD~V~ 218 (305)
..++.+|||+|||+|.++..+++. ..+|+++|+|+.++..+.+.+... +++.+++.|+...+. ..+||+|+
T Consensus 30 ~~~~~~vLdiG~G~G~~~~~l~~~---~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~~----~~~~D~v~ 102 (199)
T 2xvm_A 30 VVKPGKTLDLGCGNGRNSLYLAAN---GYDVDAWDKNAMSIANVERIKSIENLDNLHTRVVDLNNLTF----DRQYDFIL 102 (199)
T ss_dssp TSCSCEEEEETCTTSHHHHHHHHT---TCEEEEEESCHHHHHHHHHHHHHHTCTTEEEEECCGGGCCC----CCCEEEEE
T ss_pred ccCCCeEEEEcCCCCHHHHHHHHC---CCeEEEEECCHHHHHHHHHHHHhCCCCCcEEEEcchhhCCC----CCCceEEE
Confidence 456789999999999999999987 348999999996666655554433 489999999877542 47899999
Q ss_pred EeCC-----ChhHHHHHHHHHhccCCCCcEEEEEE
Q 021911 219 SDVA-----QPDQARILALNASYFLKAGGHFVISI 248 (305)
Q Consensus 219 ~d~~-----~~~~~~~l~~~a~~~LkpGG~lv~s~ 248 (305)
+..+ ..+...++. ++.++|||||+|++.+
T Consensus 103 ~~~~l~~~~~~~~~~~l~-~~~~~L~~gG~l~~~~ 136 (199)
T 2xvm_A 103 STVVLMFLEAKTIPGLIA-NMQRCTKPGGYNLIVA 136 (199)
T ss_dssp EESCGGGSCGGGHHHHHH-HHHHTEEEEEEEEEEE
T ss_pred EcchhhhCCHHHHHHHHH-HHHHhcCCCeEEEEEE
Confidence 9765 125666776 9999999999988865
|
| >3tma_A Methyltransferase; thump domain; 2.05A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.50 E-value=2.4e-13 Score=126.50 Aligned_cols=142 Identities=23% Similarity=0.243 Sum_probs=103.7
Q ss_pred chhhHHHHHHHccccccCCCCCCEEEEEecCCCccHHHHHhhhCCCcEEEEEeCChHHHHHHHHHHHcC--CCeEEEEcc
Q 021911 123 PFRSKLAAAVLGGVDNIWIKPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKR--TNVIPIIED 200 (305)
Q Consensus 123 ~~~s~l~a~ll~~l~~~~~~~g~~VLDlG~G~G~~t~~la~~~~~~~~V~avD~s~~~~~~l~~~a~~~--~nI~~~~~D 200 (305)
|....+++.++..+ .++++.+|||+|||+|+++..+|...++...|+++|+|+.+++.+.++++.. .+|++++.|
T Consensus 186 ~l~~~la~~l~~~~---~~~~~~~vLD~gcGsG~~~ie~a~~~~~~~~v~g~Di~~~~i~~a~~n~~~~g~~~i~~~~~D 262 (354)
T 3tma_A 186 SLTPVLAQALLRLA---DARPGMRVLDPFTGSGTIALEAASTLGPTSPVYAGDLDEKRLGLAREAALASGLSWIRFLRAD 262 (354)
T ss_dssp SCCHHHHHHHHHHT---TCCTTCCEEESSCTTSHHHHHHHHHHCTTSCEEEEESCHHHHHHHHHHHHHTTCTTCEEEECC
T ss_pred CcCHHHHHHHHHHh---CCCCCCEEEeCCCCcCHHHHHHHHhhCCCceEEEEECCHHHHHHHHHHHHHcCCCceEEEeCC
Confidence 44556666665433 4677899999999999999999998756679999999997777666666554 379999999
Q ss_pred CCCCcccccCCCcEeEEEEeCCCh-----------hHHHHHHHHHhccCCCCcEEEEEEcccccCCCCchhhhHHHHHHH
Q 021911 201 ARHPAKYRMLVGMVDVIFSDVAQP-----------DQARILALNASYFLKAGGHFVISIKANCIDSTVPAEAVFQSEVKK 269 (305)
Q Consensus 201 ~~~~~~~~~~~~~fD~V~~d~~~~-----------~~~~~l~~~a~~~LkpGG~lv~s~~~~~i~~~~~~~~v~~~~~~~ 269 (305)
+.+.+.. ...||+|++|+|.- .+..++. .+.++|||||++++.+. ++. . ...
T Consensus 263 ~~~~~~~---~~~~D~Ii~npPyg~r~~~~~~~~~~~~~~~~-~~~~~LkpgG~l~i~t~--------~~~-~----~~~ 325 (354)
T 3tma_A 263 ARHLPRF---FPEVDRILANPPHGLRLGRKEGLFHLYWDFLR-GALALLPPGGRVALLTL--------RPA-L----LKR 325 (354)
T ss_dssp GGGGGGT---CCCCSEEEECCCSCC----CHHHHHHHHHHHH-HHHHTSCTTCEEEEEES--------CHH-H----HHH
T ss_pred hhhCccc---cCCCCEEEECCCCcCccCCcccHHHHHHHHHH-HHHHhcCCCcEEEEEeC--------CHH-H----HHH
Confidence 9886532 35689999999931 1245555 89999999999999982 111 1 223
Q ss_pred HHHCCCcEeEEeecC
Q 021911 270 LQQDQFKPFEQVTLE 284 (305)
Q Consensus 270 l~~~Gf~~~e~~~l~ 284 (305)
+.+.||++.+...+.
T Consensus 326 ~~~~g~~~~~~~~l~ 340 (354)
T 3tma_A 326 ALPPGFALRHARVVE 340 (354)
T ss_dssp HCCTTEEEEEEEECC
T ss_pred HhhcCcEEEEEEEEE
Confidence 312788887766553
|
| >2plw_A Ribosomal RNA methyltransferase, putative; malaria, SAM, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.70A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=99.50 E-value=2e-13 Score=116.09 Aligned_cols=98 Identities=16% Similarity=0.239 Sum_probs=75.0
Q ss_pred CCCCCEEEEEecCCCccHHHHHhhhCC-CcEEEEEeCChHHHHHHHHHHHcCCCeEEEEccCCCCcc-------------
Q 021911 141 IKPGARVLYLGAASGTTVSHVSDIVGP-NGVVYAVEFSHRSGRDLVNMAKKRTNVIPIIEDARHPAK------------- 206 (305)
Q Consensus 141 ~~~g~~VLDlG~G~G~~t~~la~~~~~-~~~V~avD~s~~~~~~l~~~a~~~~nI~~~~~D~~~~~~------------- 206 (305)
++++.+|||+|||+|.++.++++.+.+ .++|+++|+|+. ...+++.+++.|+.+...
T Consensus 20 ~~~~~~vLDlGcG~G~~~~~l~~~~~~~~~~v~gvD~s~~---------~~~~~v~~~~~d~~~~~~~~~~~~~~i~~~~ 90 (201)
T 2plw_A 20 LKKNKIILDIGCYPGSWCQVILERTKNYKNKIIGIDKKIM---------DPIPNVYFIQGEIGKDNMNNIKNINYIDNMN 90 (201)
T ss_dssp CCTTEEEEEESCTTCHHHHHHHHHTTTSCEEEEEEESSCC---------CCCTTCEEEECCTTTTSSCCC----------
T ss_pred CCCCCEEEEeCCCCCHHHHHHHHHcCCCCceEEEEeCCcc---------CCCCCceEEEccccchhhhhhcccccccccc
Confidence 578899999999999999999998743 579999999982 123689999999977540
Q ss_pred ----c-----ccCCCcEeEEEEeCCC-------hhHH-------HHHHHHHhccCCCCcEEEEEE
Q 021911 207 ----Y-----RMLVGMVDVIFSDVAQ-------PDQA-------RILALNASYFLKAGGHFVISI 248 (305)
Q Consensus 207 ----~-----~~~~~~fD~V~~d~~~-------~~~~-------~~l~~~a~~~LkpGG~lv~s~ 248 (305)
. .....+||+|+++.+. .+.. .++. ++.++|||||.|++.+
T Consensus 91 ~~~~~~~~~~~~~~~~fD~v~~~~~~~~~g~~~~d~~~~~~~~~~~l~-~~~~~LkpgG~lv~~~ 154 (201)
T 2plw_A 91 NNSVDYKLKEILQDKKIDIILSDAAVPCIGNKIDDHLNSCELTLSITH-FMEQYINIGGTYIVKM 154 (201)
T ss_dssp -CHHHHHHHHHHTTCCEEEEEECCCCCCCSCHHHHHHHHHHHHHHHHH-HHHHHEEEEEEEEEEE
T ss_pred chhhHHHHHhhcCCCcccEEEeCCCcCCCCCcccCHHHHHHHHHHHHH-HHHHHccCCCEEEEEE
Confidence 0 0124689999998752 2222 2455 8999999999999976
|
| >3mgg_A Methyltransferase; NYSGXRC, PSI-II, protein structure initiative, structural genomics, NEW YORK SGX research center for structural genomics; 1.86A {Methanosarcina mazei} | Back alignment and structure |
|---|
Probab=99.50 E-value=3.7e-13 Score=120.12 Aligned_cols=105 Identities=20% Similarity=0.199 Sum_probs=85.1
Q ss_pred CCCCCCEEEEEecCCCccHHHHHhhhCCCcEEEEEeCChHHHHHHHHHHHcC--CCeEEEEccCCCCcccccCCCcEeEE
Q 021911 140 WIKPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKR--TNVIPIIEDARHPAKYRMLVGMVDVI 217 (305)
Q Consensus 140 ~~~~g~~VLDlG~G~G~~t~~la~~~~~~~~V~avD~s~~~~~~l~~~a~~~--~nI~~~~~D~~~~~~~~~~~~~fD~V 217 (305)
.+.++.+|||+|||+|.++..+++.. +..+|+++|+|+..+..+.+.+... +++.+++.|+...+. ...+||+|
T Consensus 34 ~~~~~~~vLDiG~G~G~~~~~l~~~~-~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~~---~~~~fD~v 109 (276)
T 3mgg_A 34 VYPPGAKVLEAGCGIGAQTVILAKNN-PDAEITSIDISPESLEKARENTEKNGIKNVKFLQANIFSLPF---EDSSFDHI 109 (276)
T ss_dssp CCCTTCEEEETTCTTSHHHHHHHHHC-TTSEEEEEESCHHHHHHHHHHHHHTTCCSEEEEECCGGGCCS---CTTCEEEE
T ss_pred cCCCCCeEEEecCCCCHHHHHHHHhC-CCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEcccccCCC---CCCCeeEE
Confidence 45788999999999999999999984 5679999999996666555555443 589999999986542 35799999
Q ss_pred EEeCC---ChhHHHHHHHHHhccCCCCcEEEEEEc
Q 021911 218 FSDVA---QPDQARILALNASYFLKAGGHFVISIK 249 (305)
Q Consensus 218 ~~d~~---~~~~~~~l~~~a~~~LkpGG~lv~s~~ 249 (305)
+++.. .++...++. ++.++|||||+|++.+.
T Consensus 110 ~~~~~l~~~~~~~~~l~-~~~~~L~pgG~l~~~~~ 143 (276)
T 3mgg_A 110 FVCFVLEHLQSPEEALK-SLKKVLKPGGTITVIEG 143 (276)
T ss_dssp EEESCGGGCSCHHHHHH-HHHHHEEEEEEEEEEEE
T ss_pred EEechhhhcCCHHHHHH-HHHHHcCCCcEEEEEEc
Confidence 99776 456667777 99999999999999863
|
| >2ex4_A Adrenal gland protein AD-003; methyltransferase, structural genomics, SGC, structural genomics consortium; HET: SAH; 1.75A {Homo sapiens} SCOP: c.66.1.42 | Back alignment and structure |
|---|
Probab=99.49 E-value=2.2e-13 Score=119.44 Aligned_cols=141 Identities=13% Similarity=0.003 Sum_probs=97.7
Q ss_pred CCCCEEEEEecCCCccHHHHHhhhCCCcEEEEEeCChHHHHHHHHHHHcC--CCeEEEEccCCCCcccccCCCcEeEEEE
Q 021911 142 KPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKR--TNVIPIIEDARHPAKYRMLVGMVDVIFS 219 (305)
Q Consensus 142 ~~g~~VLDlG~G~G~~t~~la~~~~~~~~V~avD~s~~~~~~l~~~a~~~--~nI~~~~~D~~~~~~~~~~~~~fD~V~~ 219 (305)
.++.+|||+|||+|.++..+++.. ..+|+++|+|+.+++.+.+.+... .++.+++.|+...+. ..++||+|++
T Consensus 78 ~~~~~vLDiGcG~G~~~~~l~~~~--~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~~---~~~~fD~v~~ 152 (241)
T 2ex4_A 78 TGTSCALDCGAGIGRITKRLLLPL--FREVDMVDITEDFLVQAKTYLGEEGKRVRNYFCCGLQDFTP---EPDSYDVIWI 152 (241)
T ss_dssp CCCSEEEEETCTTTHHHHHTTTTT--CSEEEEEESCHHHHHHHHHHTGGGGGGEEEEEECCGGGCCC---CSSCEEEEEE
T ss_pred CCCCEEEEECCCCCHHHHHHHHhc--CCEEEEEeCCHHHHHHHHHHhhhcCCceEEEEEcChhhcCC---CCCCEEEEEE
Confidence 368899999999999999998874 458999999996655555444432 368899999876542 2458999999
Q ss_pred eCC---Chh--HHHHHHHHHhccCCCCcEEEEEEccccc----CCCCchhh-hHHHHHHHHHHCCCcEeEEeecCCCCC
Q 021911 220 DVA---QPD--QARILALNASYFLKAGGHFVISIKANCI----DSTVPAEA-VFQSEVKKLQQDQFKPFEQVTLEPFER 288 (305)
Q Consensus 220 d~~---~~~--~~~~l~~~a~~~LkpGG~lv~s~~~~~i----~~~~~~~~-v~~~~~~~l~~~Gf~~~e~~~l~p~~~ 288 (305)
+.. .++ ...++. ++.++|||||+|++++..... ........ -..+..+.|+++||++++......+..
T Consensus 153 ~~~l~~~~~~~~~~~l~-~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~~~~~~~~~~~~ 230 (241)
T 2ex4_A 153 QWVIGHLTDQHLAEFLR-RCKGSLRPNGIIVIKDNMAQEGVILDDVDSSVCRDLDVVRRIICSAGLSLLAEERQENLPD 230 (241)
T ss_dssp ESCGGGSCHHHHHHHHH-HHHHHEEEEEEEEEEEEEBSSSEEEETTTTEEEEBHHHHHHHHHHTTCCEEEEEECCSCCT
T ss_pred cchhhhCCHHHHHHHHH-HHHHhcCCCeEEEEEEccCCCcceecccCCcccCCHHHHHHHHHHcCCeEEEeeecCCCcc
Confidence 865 222 346666 999999999999998732110 00000000 122334666889999999887766654
|
| >3sm3_A SAM-dependent methyltransferases; NESG, structural genomics, PSI-biology, protein structure in northeast structural genomics; 2.20A {Methanosarcina mazei} | Back alignment and structure |
|---|
Probab=99.49 E-value=3.1e-13 Score=117.05 Aligned_cols=102 Identities=17% Similarity=0.163 Sum_probs=78.5
Q ss_pred CCCCCEEEEEecCCCccHHHHHhhhCCCcEEEEEeCChHHHHHHHHHHHcC-------CCeEEEEccCCCCcccccCCCc
Q 021911 141 IKPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKR-------TNVIPIIEDARHPAKYRMLVGM 213 (305)
Q Consensus 141 ~~~g~~VLDlG~G~G~~t~~la~~~~~~~~V~avD~s~~~~~~l~~~a~~~-------~nI~~~~~D~~~~~~~~~~~~~ 213 (305)
++++.+|||+|||+|.++..++.. ..+|+++|+|+.++..+.+.+... .++.+++.|+...+. ...+
T Consensus 28 ~~~~~~vLdiG~G~G~~~~~l~~~---~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~~---~~~~ 101 (235)
T 3sm3_A 28 LQEDDEILDIGCGSGKISLELASK---GYSVTGIDINSEAIRLAETAARSPGLNQKTGGKAEFKVENASSLSF---HDSS 101 (235)
T ss_dssp CCTTCEEEEETCTTSHHHHHHHHT---TCEEEEEESCHHHHHHHHHHTTCCSCCSSSSCEEEEEECCTTSCCS---CTTC
T ss_pred CCCCCeEEEECCCCCHHHHHHHhC---CCeEEEEECCHHHHHHHHHHHHhcCCccccCcceEEEEecccccCC---CCCc
Confidence 567899999999999999999987 348999999995555554444432 257999999987642 3579
Q ss_pred EeEEEEeCC---ChhHH---HHHHHHHhccCCCCcEEEEEEc
Q 021911 214 VDVIFSDVA---QPDQA---RILALNASYFLKAGGHFVISIK 249 (305)
Q Consensus 214 fD~V~~d~~---~~~~~---~~l~~~a~~~LkpGG~lv~s~~ 249 (305)
||+|++... .++.. .++. ++.++|||||+|++++.
T Consensus 102 ~D~v~~~~~l~~~~~~~~~~~~l~-~~~~~L~pgG~l~~~~~ 142 (235)
T 3sm3_A 102 FDFAVMQAFLTSVPDPKERSRIIK-EVFRVLKPGAYLYLVEF 142 (235)
T ss_dssp EEEEEEESCGGGCCCHHHHHHHHH-HHHHHEEEEEEEEEEEE
T ss_pred eeEEEEcchhhcCCCHHHHHHHHH-HHHHHcCCCeEEEEEEC
Confidence 999999765 22222 5665 99999999999999874
|
| >3dxy_A TRNA (guanine-N(7)-)-methyltransferase; rossmann fold methyltransferase, tRNA modification, S-adenosyl-L-methionine, TR processing; HET: SAM; 1.50A {Escherichia coli} PDB: 3dxx_A* 3dxz_A* | Back alignment and structure |
|---|
Probab=99.49 E-value=5.4e-14 Score=122.36 Aligned_cols=106 Identities=14% Similarity=0.122 Sum_probs=84.2
Q ss_pred CCCCCEEEEEecCCCccHHHHHhhhCCCcEEEEEeCChHHHHHHHHHHHcC--CCeEEEEccCCCCcccccCCCcEeEEE
Q 021911 141 IKPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKR--TNVIPIIEDARHPAKYRMLVGMVDVIF 218 (305)
Q Consensus 141 ~~~g~~VLDlG~G~G~~t~~la~~~~~~~~V~avD~s~~~~~~l~~~a~~~--~nI~~~~~D~~~~~~~~~~~~~fD~V~ 218 (305)
..++.+|||||||+|.++..+|... +...|++||+|+.++..+.+.++.. +||.+++.|+.+..+......+||+|+
T Consensus 32 ~~~~~~vLDiGcG~G~~~~~lA~~~-p~~~v~giD~s~~~l~~a~~~~~~~~l~nv~~~~~Da~~~l~~~~~~~~~d~v~ 110 (218)
T 3dxy_A 32 GREAPVTLEIGFGMGASLVAMAKDR-PEQDFLGIEVHSPGVGACLASAHEEGLSNLRVMCHDAVEVLHKMIPDNSLRMVQ 110 (218)
T ss_dssp SSCCCEEEEESCTTCHHHHHHHHHC-TTSEEEEECSCHHHHHHHHHHHHHTTCSSEEEECSCHHHHHHHHSCTTCEEEEE
T ss_pred CCCCCeEEEEeeeChHHHHHHHHHC-CCCeEEEEEecHHHHHHHHHHHHHhCCCcEEEEECCHHHHHHHHcCCCChheEE
Confidence 3467899999999999999999875 6779999999998777777776654 689999999877532112467999999
Q ss_pred EeCCChh-----------HHHHHHHHHhccCCCCcEEEEEE
Q 021911 219 SDVAQPD-----------QARILALNASYFLKAGGHFVISI 248 (305)
Q Consensus 219 ~d~~~~~-----------~~~~l~~~a~~~LkpGG~lv~s~ 248 (305)
++.+.|. +..++. .+.++|||||.|++++
T Consensus 111 ~~~~~p~~~~~~~~rr~~~~~~l~-~~~r~LkpGG~l~i~t 150 (218)
T 3dxy_A 111 LFFPDPWHKARHNKRRIVQVPFAE-LVKSKLQLGGVFHMAT 150 (218)
T ss_dssp EESCCCCCSGGGGGGSSCSHHHHH-HHHHHEEEEEEEEEEE
T ss_pred EeCCCCccchhhhhhhhhhHHHHH-HHHHHcCCCcEEEEEe
Confidence 9855331 124666 8999999999999998
|
| >3cgg_A SAM-dependent methyltransferase; NP_600671.1, methyltransferase domain, structural genomics; HET: NHE CIT; 2.00A {Corynebacterium glutamicum atcc 13032} | Back alignment and structure |
|---|
Probab=99.49 E-value=3.9e-13 Score=112.83 Aligned_cols=139 Identities=20% Similarity=0.160 Sum_probs=98.7
Q ss_pred CCCCCEEEEEecCCCccHHHHHhhhCCCcEEEEEeCChHHHHHHHHHHHcC-CCeEEEEccCCCCcccccCCCcEeEEEE
Q 021911 141 IKPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKR-TNVIPIIEDARHPAKYRMLVGMVDVIFS 219 (305)
Q Consensus 141 ~~~g~~VLDlG~G~G~~t~~la~~~~~~~~V~avD~s~~~~~~l~~~a~~~-~nI~~~~~D~~~~~~~~~~~~~fD~V~~ 219 (305)
++++.+|||+|||+|.++..++.. ..+|+++|+|+ .+++.++++ +++.+++.|+...+. ...+||+|++
T Consensus 44 ~~~~~~vLdiG~G~G~~~~~l~~~---~~~v~~~D~~~----~~~~~a~~~~~~~~~~~~d~~~~~~---~~~~~D~i~~ 113 (195)
T 3cgg_A 44 APRGAKILDAGCGQGRIGGYLSKQ---GHDVLGTDLDP----ILIDYAKQDFPEARWVVGDLSVDQI---SETDFDLIVS 113 (195)
T ss_dssp SCTTCEEEEETCTTTHHHHHHHHT---TCEEEEEESCH----HHHHHHHHHCTTSEEEECCTTTSCC---CCCCEEEEEE
T ss_pred ccCCCeEEEECCCCCHHHHHHHHC---CCcEEEEcCCH----HHHHHHHHhCCCCcEEEcccccCCC---CCCceeEEEE
Confidence 467899999999999999999987 24899999999 555555544 579999999987532 2468999999
Q ss_pred eCCC------hhHHHHHHHHHhccCCCCcEEEEEEcccccCCCCchhhhHHHHHHHHHHCCCcEeEEeec---CCCC--C
Q 021911 220 DVAQ------PDQARILALNASYFLKAGGHFVISIKANCIDSTVPAEAVFQSEVKKLQQDQFKPFEQVTL---EPFE--R 288 (305)
Q Consensus 220 d~~~------~~~~~~l~~~a~~~LkpGG~lv~s~~~~~i~~~~~~~~v~~~~~~~l~~~Gf~~~e~~~l---~p~~--~ 288 (305)
+.+. ++...++. ++.++|||+|.+++++.... . .......+.+++.||++++.... .|+. .
T Consensus 114 ~~~~~~~~~~~~~~~~l~-~~~~~l~~~G~l~~~~~~~~---~----~~~~~~~~~l~~~Gf~~~~~~~~~~~~~~~~~~ 185 (195)
T 3cgg_A 114 AGNVMGFLAEDGREPALA-NIHRALGADGRAVIGFGAGR---G----WVFGDFLEVAERVGLELENAFESWDLKPFVQGS 185 (195)
T ss_dssp CCCCGGGSCHHHHHHHHH-HHHHHEEEEEEEEEEEETTS---S----CCHHHHHHHHHHHTEEEEEEESSTTCCBCCTTC
T ss_pred CCcHHhhcChHHHHHHHH-HHHHHhCCCCEEEEEeCCCC---C----cCHHHHHHHHHHcCCEEeeeecccccCcCCCCC
Confidence 7431 34456666 99999999999999873211 1 11223346667889999877532 3433 3
Q ss_pred ceEEEEEEE
Q 021911 289 DHACVVGGY 297 (305)
Q Consensus 289 ~~~~vv~~~ 297 (305)
.+.++++++
T Consensus 186 ~~~~~v~~k 194 (195)
T 3cgg_A 186 EFLVAVFTK 194 (195)
T ss_dssp SEEEEEEEE
T ss_pred cEEEEEEec
Confidence 455555554
|
| >3r3h_A O-methyltransferase, SAM-dependent; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.65A {Legionella pneumophila subsp} | Back alignment and structure |
|---|
Probab=99.49 E-value=8.3e-14 Score=123.04 Aligned_cols=107 Identities=15% Similarity=0.138 Sum_probs=84.8
Q ss_pred CCCCCEEEEEecCCCccHHHHHhhhCCCcEEEEEeCChHHHHHHHHHHHcC---CCeEEEEccCCCCccccc---CCCcE
Q 021911 141 IKPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKR---TNVIPIIEDARHPAKYRM---LVGMV 214 (305)
Q Consensus 141 ~~~g~~VLDlG~G~G~~t~~la~~~~~~~~V~avD~s~~~~~~l~~~a~~~---~nI~~~~~D~~~~~~~~~---~~~~f 214 (305)
..+..+|||+|||+|..+..+|+.+.+.++|++||+|+.+++.+.+.++.. ++|++++.|+.+..+... ...+|
T Consensus 58 ~~~~~~VLDiG~G~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~g~~~~i~~~~gda~~~l~~~~~~~~~~~f 137 (242)
T 3r3h_A 58 LTRAKKVLELGTFTGYSALAMSLALPDDGQVITCDINEGWTKHAHPYWREAKQEHKIKLRLGPALDTLHSLLNEGGEHQF 137 (242)
T ss_dssp HHTCSEEEEEESCCSHHHHHHHHTSCTTCEEEEEECCCSSCCCSHHHHHHTTCTTTEEEEESCHHHHHHHHHHHHCSSCE
T ss_pred hcCcCEEEEeeCCcCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHHHhhccCCCCE
Confidence 445689999999999999999998866789999999986554444444433 589999999866432200 03689
Q ss_pred eEEEEeCCChhHHHHHHHHHhccCCCCcEEEEEE
Q 021911 215 DVIFSDVAQPDQARILALNASYFLKAGGHFVISI 248 (305)
Q Consensus 215 D~V~~d~~~~~~~~~l~~~a~~~LkpGG~lv~s~ 248 (305)
|+|++|.+..+....+. ++.++|||||.|++..
T Consensus 138 D~V~~d~~~~~~~~~l~-~~~~~LkpGG~lv~d~ 170 (242)
T 3r3h_A 138 DFIFIDADKTNYLNYYE-LALKLVTPKGLIAIDN 170 (242)
T ss_dssp EEEEEESCGGGHHHHHH-HHHHHEEEEEEEEEEC
T ss_pred eEEEEcCChHHhHHHHH-HHHHhcCCCeEEEEEC
Confidence 99999999877777787 9999999999999964
|
| >3hm2_A Precorrin-6Y C5,15-methyltransferase; alpha-beta-sandwich, structural genomics, PSI-2, protein structure initiative; 2.21A {Corynebacterium diphtheriae} | Back alignment and structure |
|---|
Probab=99.49 E-value=4.1e-13 Score=111.57 Aligned_cols=125 Identities=18% Similarity=0.105 Sum_probs=90.1
Q ss_pred CCCCCCEEEEEecCCCccHHHHHhhhCCCcEEEEEeCChHHHHHHHHHHHcC--C-CeEEEEccCCCCcccccCCCcEeE
Q 021911 140 WIKPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKR--T-NVIPIIEDARHPAKYRMLVGMVDV 216 (305)
Q Consensus 140 ~~~~g~~VLDlG~G~G~~t~~la~~~~~~~~V~avD~s~~~~~~l~~~a~~~--~-nI~~~~~D~~~~~~~~~~~~~fD~ 216 (305)
.+.++.+|||+|||+|.++.++++.+ +..+|+++|+|+.+++.+.+.++.. + ++ +++.|+....+. ...+||+
T Consensus 22 ~~~~~~~vldiG~G~G~~~~~l~~~~-~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~-~~~~d~~~~~~~--~~~~~D~ 97 (178)
T 3hm2_A 22 APKPHETLWDIGGGSGSIAIEWLRST-PQTTAVCFEISEERRERILSNAINLGVSDRI-AVQQGAPRAFDD--VPDNPDV 97 (178)
T ss_dssp CCCTTEEEEEESTTTTHHHHHHHTTS-SSEEEEEECSCHHHHHHHHHHHHTTTCTTSE-EEECCTTGGGGG--CCSCCSE
T ss_pred cccCCCeEEEeCCCCCHHHHHHHHHC-CCCeEEEEeCCHHHHHHHHHHHHHhCCCCCE-EEecchHhhhhc--cCCCCCE
Confidence 57788999999999999999999986 5679999999996666665555443 3 78 888887553221 2378999
Q ss_pred EEEeCCChhHHHHHHHHHhccCCCCcEEEEEEcccccCCCCchhhhHHHHHHHHHHCCCcEeE
Q 021911 217 IFSDVAQPDQARILALNASYFLKAGGHFVISIKANCIDSTVPAEAVFQSEVKKLQQDQFKPFE 279 (305)
Q Consensus 217 V~~d~~~~~~~~~l~~~a~~~LkpGG~lv~s~~~~~i~~~~~~~~v~~~~~~~l~~~Gf~~~e 279 (305)
|+++.+... ..++. ++.++|||||+|++.+. + . .-.......+++.++++..
T Consensus 98 i~~~~~~~~-~~~l~-~~~~~L~~gG~l~~~~~--~------~-~~~~~~~~~~~~~~~~~~~ 149 (178)
T 3hm2_A 98 IFIGGGLTA-PGVFA-AAWKRLPVGGRLVANAV--T------V-ESEQMLWALRKQFGGTISS 149 (178)
T ss_dssp EEECC-TTC-TTHHH-HHHHTCCTTCEEEEEEC--S------H-HHHHHHHHHHHHHCCEEEE
T ss_pred EEECCcccH-HHHHH-HHHHhcCCCCEEEEEee--c------c-ccHHHHHHHHHHcCCeeEE
Confidence 999887655 55666 89999999999999872 1 1 1112224455666676654
|
| >3u81_A Catechol O-methyltransferase; neurotransmitter degradation, transferase transferase inhibitor complex; HET: SAH; 1.13A {Rattus norvegicus} SCOP: c.66.1.1 PDB: 3nwe_A* 3oe5_A* 3ozr_A* 3oe4_A* 3ozt_A* 3ozs_A* 3r6t_A* 3hvi_A* 1jr4_A* 1vid_A* 1h1d_A* 2cl5_A* 3hvh_A* 3hvj_A* 3hvk_A* 3nw9_A* 3nwb_A* 3s68_A* 2zlb_A 2zth_A* ... | Back alignment and structure |
|---|
Probab=99.49 E-value=3.7e-13 Score=116.71 Aligned_cols=149 Identities=14% Similarity=0.118 Sum_probs=97.4
Q ss_pred CCCCCEEEEEecCCCccHHHHHhhhCCCcEEEEEeCChHHHHHHHHHHHcC---CCeEEEEccCCCCcccc---cCCCcE
Q 021911 141 IKPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKR---TNVIPIIEDARHPAKYR---MLVGMV 214 (305)
Q Consensus 141 ~~~g~~VLDlG~G~G~~t~~la~~~~~~~~V~avD~s~~~~~~l~~~a~~~---~nI~~~~~D~~~~~~~~---~~~~~f 214 (305)
..+..+|||+|||+|..+.++|+.+.+.++|++||+|+.+++.+.+.++.. .+|++++.|+.+..+.. ....+|
T Consensus 56 ~~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~l~~~~~~~~~~~f 135 (221)
T 3u81_A 56 EYSPSLVLELGAYCGYSAVRMARLLQPGARLLTMEINPDCAAITQQMLNFAGLQDKVTILNGASQDLIPQLKKKYDVDTL 135 (221)
T ss_dssp HHCCSEEEEECCTTSHHHHHHHTTSCTTCEEEEEESCHHHHHHHHHHHHHHTCGGGEEEEESCHHHHGGGTTTTSCCCCC
T ss_pred hcCCCEEEEECCCCCHHHHHHHHhCCCCCEEEEEeCChHHHHHHHHHHHHcCCCCceEEEECCHHHHHHHHHHhcCCCce
Confidence 456789999999999999999998766789999999996665555544432 46999999986532221 012689
Q ss_pred eEEEEeCCChhHH---HHHHHHHhccCCCCcEEEEEEcccccCCCCchhhhHHHHHHHHHH-CCCcEeEEeecCCCC-Cc
Q 021911 215 DVIFSDVAQPDQA---RILALNASYFLKAGGHFVISIKANCIDSTVPAEAVFQSEVKKLQQ-DQFKPFEQVTLEPFE-RD 289 (305)
Q Consensus 215 D~V~~d~~~~~~~---~~l~~~a~~~LkpGG~lv~s~~~~~i~~~~~~~~v~~~~~~~l~~-~Gf~~~e~~~l~p~~-~~ 289 (305)
|+|++|....... +.+. .+ ++|||||.|++.. +..... ....+.+++ ..|+....-...++. ..
T Consensus 136 D~V~~d~~~~~~~~~~~~~~-~~-~~LkpgG~lv~~~---~~~~~~------~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 204 (221)
T 3u81_A 136 DMVFLDHWKDRYLPDTLLLE-KC-GLLRKGTVLLADN---VIVPGT------PDFLAYVRGSSSFECTHYSSYLEYMKVV 204 (221)
T ss_dssp SEEEECSCGGGHHHHHHHHH-HT-TCCCTTCEEEESC---CCCCCC------HHHHHHHHHCTTEEEEEEEEEETTTTEE
T ss_pred EEEEEcCCcccchHHHHHHH-hc-cccCCCeEEEEeC---CCCcch------HHHHHHHhhCCCceEEEcccccccCCCC
Confidence 9999998754333 3444 55 9999999999875 222111 122344433 345544333333443 34
Q ss_pred eEEEEEEEcCC
Q 021911 290 HACVVGGYRMP 300 (305)
Q Consensus 290 ~~~vv~~~~~~ 300 (305)
..+.+++++.+
T Consensus 205 dG~~~~~~~g~ 215 (221)
T 3u81_A 205 DGLEKAIYQGP 215 (221)
T ss_dssp EEEEEEEECCC
T ss_pred CceEEEEEeCC
Confidence 56677777654
|
| >3ccf_A Cyclopropane-fatty-acyl-phospholipid synthase; YP_321342.1, putative methyltransferase; 1.90A {Anabaena variabilis atcc 29413} | Back alignment and structure |
|---|
Probab=99.49 E-value=7.9e-14 Score=125.01 Aligned_cols=98 Identities=21% Similarity=0.341 Sum_probs=81.2
Q ss_pred CCCCCCEEEEEecCCCccHHHHHhhhCCCcEEEEEeCChHHHHHHHHHHHcC-CCeEEEEccCCCCcccccCCCcEeEEE
Q 021911 140 WIKPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKR-TNVIPIIEDARHPAKYRMLVGMVDVIF 218 (305)
Q Consensus 140 ~~~~g~~VLDlG~G~G~~t~~la~~~~~~~~V~avD~s~~~~~~l~~~a~~~-~nI~~~~~D~~~~~~~~~~~~~fD~V~ 218 (305)
.+.++.+|||+|||+|.++..+++ +..+|+++|+|+ .+++.++++ +++.+++.|+...+. ..+||+|+
T Consensus 54 ~~~~~~~vLDiGcG~G~~~~~l~~---~~~~v~gvD~s~----~~~~~a~~~~~~~~~~~~d~~~~~~----~~~fD~v~ 122 (279)
T 3ccf_A 54 NPQPGEFILDLGCGTGQLTEKIAQ---SGAEVLGTDNAA----TMIEKARQNYPHLHFDVADARNFRV----DKPLDAVF 122 (279)
T ss_dssp CCCTTCEEEEETCTTSHHHHHHHH---TTCEEEEEESCH----HHHHHHHHHCTTSCEEECCTTTCCC----SSCEEEEE
T ss_pred CCCCCCEEEEecCCCCHHHHHHHh---CCCeEEEEECCH----HHHHHHHhhCCCCEEEECChhhCCc----CCCcCEEE
Confidence 467789999999999999999998 346999999999 555555544 689999999987542 47999999
Q ss_pred EeCC---ChhHHHHHHHHHhccCCCCcEEEEEEc
Q 021911 219 SDVA---QPDQARILALNASYFLKAGGHFVISIK 249 (305)
Q Consensus 219 ~d~~---~~~~~~~l~~~a~~~LkpGG~lv~s~~ 249 (305)
+... .++...++. ++.++|||||+|++++.
T Consensus 123 ~~~~l~~~~d~~~~l~-~~~~~LkpgG~l~~~~~ 155 (279)
T 3ccf_A 123 SNAMLHWVKEPEAAIA-SIHQALKSGGRFVAEFG 155 (279)
T ss_dssp EESCGGGCSCHHHHHH-HHHHHEEEEEEEEEEEE
T ss_pred EcchhhhCcCHHHHHH-HHHHhcCCCcEEEEEec
Confidence 9776 367777887 99999999999999874
|
| >2kw5_A SLR1183 protein; structural genomics, northeast structural genomics consortium (NESG), PSI-2, protein structure initiative, unknown function; NMR {Synechocystis} PDB: 3mer_A | Back alignment and structure |
|---|
Probab=99.49 E-value=6.5e-13 Score=112.98 Aligned_cols=133 Identities=14% Similarity=0.109 Sum_probs=92.4
Q ss_pred CCCCCEEEEEecCCCccHHHHHhhhCCCcEEEEEeCChHHHHHHHHHHHcC-CCeEEEEccCCCCcccccCCCcEeEEEE
Q 021911 141 IKPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKR-TNVIPIIEDARHPAKYRMLVGMVDVIFS 219 (305)
Q Consensus 141 ~~~g~~VLDlG~G~G~~t~~la~~~~~~~~V~avD~s~~~~~~l~~~a~~~-~nI~~~~~D~~~~~~~~~~~~~fD~V~~ 219 (305)
+.++ +|||+|||+|.++..+++. ..+|+++|+|+.++..+.+.+... .++.+++.|+...+ ....+||+|++
T Consensus 28 ~~~~-~vLdiGcG~G~~~~~l~~~---~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~d~~~~~---~~~~~fD~v~~ 100 (202)
T 2kw5_A 28 IPQG-KILCLAEGEGRNACFLASL---GYEVTAVDQSSVGLAKAKQLAQEKGVKITTVQSNLADFD---IVADAWEGIVS 100 (202)
T ss_dssp SCSS-EEEECCCSCTHHHHHHHTT---TCEEEEECSSHHHHHHHHHHHHHHTCCEEEECCBTTTBS---CCTTTCSEEEE
T ss_pred CCCC-CEEEECCCCCHhHHHHHhC---CCeEEEEECCHHHHHHHHHHHHhcCCceEEEEcChhhcC---CCcCCccEEEE
Confidence 4566 9999999999999999986 248999999996655555444332 48999999998764 22468999998
Q ss_pred eCCC---hhHHHHHHHHHhccCCCCcEEEEEEcccccC-----CCCc-hhhhHHHHHHHHHHCCCcEeEEee
Q 021911 220 DVAQ---PDQARILALNASYFLKAGGHFVISIKANCID-----STVP-AEAVFQSEVKKLQQDQFKPFEQVT 282 (305)
Q Consensus 220 d~~~---~~~~~~l~~~a~~~LkpGG~lv~s~~~~~i~-----~~~~-~~~v~~~~~~~l~~~Gf~~~e~~~ 282 (305)
.... .+...++. ++.++|||||+|++++...... .... ....-.+++..+-+ ||++++...
T Consensus 101 ~~~~~~~~~~~~~l~-~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~-Gf~v~~~~~ 170 (202)
T 2kw5_A 101 IFCHLPSSLRQQLYP-KVYQGLKPGGVFILEGFAPEQLQYNTGGPKDLDLLPKLETLQSELP-SLNWLIANN 170 (202)
T ss_dssp ECCCCCHHHHHHHHH-HHHTTCCSSEEEEEEEECTTTGGGTSCCSSSGGGCCCHHHHHHHCS-SSCEEEEEE
T ss_pred EhhcCCHHHHHHHHH-HHHHhcCCCcEEEEEEeccccccCCCCCCCcceeecCHHHHHHHhc-CceEEEEEE
Confidence 6552 34556666 9999999999999998432211 0001 11223344555544 999887654
|
| >2p7i_A Hypothetical protein; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; 1.74A {Pectobacterium atrosepticum SCRI1043} SCOP: c.66.1.41 PDB: 2p7h_A | Back alignment and structure |
|---|
Probab=99.49 E-value=3.6e-13 Score=117.49 Aligned_cols=96 Identities=20% Similarity=0.228 Sum_probs=77.9
Q ss_pred CCCCEEEEEecCCCccHHHHHhhhCCCcEEEEEeCChHHHHHHHHHHHcC--CCeEEEEccCCCCcccccCCCcEeEEEE
Q 021911 142 KPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKR--TNVIPIIEDARHPAKYRMLVGMVDVIFS 219 (305)
Q Consensus 142 ~~g~~VLDlG~G~G~~t~~la~~~~~~~~V~avD~s~~~~~~l~~~a~~~--~nI~~~~~D~~~~~~~~~~~~~fD~V~~ 219 (305)
.++.+|||+|||+|.++..+++.. .+|+++|+|+ .+++.++++ .++.+++.|+.+.. ..++||+|++
T Consensus 41 ~~~~~vLDiGcG~G~~~~~l~~~~---~~v~gvD~s~----~~~~~a~~~~~~~v~~~~~d~~~~~----~~~~fD~v~~ 109 (250)
T 2p7i_A 41 FRPGNLLELGSFKGDFTSRLQEHF---NDITCVEASE----EAISHAQGRLKDGITYIHSRFEDAQ----LPRRYDNIVL 109 (250)
T ss_dssp CCSSCEEEESCTTSHHHHHHTTTC---SCEEEEESCH----HHHHHHHHHSCSCEEEEESCGGGCC----CSSCEEEEEE
T ss_pred cCCCcEEEECCCCCHHHHHHHHhC---CcEEEEeCCH----HHHHHHHHhhhCCeEEEEccHHHcC----cCCcccEEEE
Confidence 467899999999999999999873 2799999999 555555443 28999999997762 3578999999
Q ss_pred eCC---ChhHHHHHHHHHh-ccCCCCcEEEEEEc
Q 021911 220 DVA---QPDQARILALNAS-YFLKAGGHFVISIK 249 (305)
Q Consensus 220 d~~---~~~~~~~l~~~a~-~~LkpGG~lv~s~~ 249 (305)
... .++...++. ++. ++|||||+|+++++
T Consensus 110 ~~~l~~~~~~~~~l~-~~~~~~LkpgG~l~i~~~ 142 (250)
T 2p7i_A 110 THVLEHIDDPVALLK-RINDDWLAEGGRLFLVCP 142 (250)
T ss_dssp ESCGGGCSSHHHHHH-HHHHTTEEEEEEEEEEEE
T ss_pred hhHHHhhcCHHHHHH-HHHHHhcCCCCEEEEEcC
Confidence 766 356777787 999 99999999999984
|
| >3bxo_A N,N-dimethyltransferase; desosamine, sugar, carbohydrate, antibiotic, SAM, adoMet; HET: SAM UPP; 2.00A {Streptomyces venezuelae} | Back alignment and structure |
|---|
Probab=99.48 E-value=5e-13 Score=116.31 Aligned_cols=95 Identities=20% Similarity=0.266 Sum_probs=76.3
Q ss_pred CCCCEEEEEecCCCccHHHHHhhhCCCcEEEEEeCChHHHHHHHHHHHcC-CCeEEEEccCCCCcccccCCCcEeEEEEe
Q 021911 142 KPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKR-TNVIPIIEDARHPAKYRMLVGMVDVIFSD 220 (305)
Q Consensus 142 ~~g~~VLDlG~G~G~~t~~la~~~~~~~~V~avD~s~~~~~~l~~~a~~~-~nI~~~~~D~~~~~~~~~~~~~fD~V~~d 220 (305)
.++.+|||+|||+|.++..+++... +|+++|+|+ .+++.++++ +++.+++.|+...+. ..+||+|+|.
T Consensus 39 ~~~~~vLdiG~G~G~~~~~l~~~~~---~v~~~D~s~----~~~~~a~~~~~~~~~~~~d~~~~~~----~~~~D~v~~~ 107 (239)
T 3bxo_A 39 PEASSLLDVACGTGTHLEHFTKEFG---DTAGLELSE----DMLTHARKRLPDATLHQGDMRDFRL----GRKFSAVVSM 107 (239)
T ss_dssp TTCCEEEEETCTTSHHHHHHHHHHS---EEEEEESCH----HHHHHHHHHCTTCEEEECCTTTCCC----SSCEEEEEEC
T ss_pred CCCCeEEEecccCCHHHHHHHHhCC---cEEEEeCCH----HHHHHHHHhCCCCEEEECCHHHccc----CCCCcEEEEc
Confidence 5778999999999999999999852 899999999 555555544 679999999987642 4689999963
Q ss_pred CC------C-hhHHHHHHHHHhccCCCCcEEEEEE
Q 021911 221 VA------Q-PDQARILALNASYFLKAGGHFVISI 248 (305)
Q Consensus 221 ~~------~-~~~~~~l~~~a~~~LkpGG~lv~s~ 248 (305)
.. . .+...++. ++.++|||||+|++++
T Consensus 108 ~~~~~~~~~~~~~~~~l~-~~~~~L~pgG~l~~~~ 141 (239)
T 3bxo_A 108 FSSVGYLKTTEELGAAVA-SFAEHLEPGGVVVVEP 141 (239)
T ss_dssp TTGGGGCCSHHHHHHHHH-HHHHTEEEEEEEEECC
T ss_pred CchHhhcCCHHHHHHHHH-HHHHhcCCCeEEEEEe
Confidence 32 2 34556666 9999999999999986
|
| >3bkw_A MLL3908 protein, S-adenosylmethionine dependent methyltransferase; NP_104914.1; HET: MSE; 1.60A {Mesorhizobium loti} | Back alignment and structure |
|---|
Probab=99.48 E-value=5.2e-13 Score=116.46 Aligned_cols=100 Identities=23% Similarity=0.295 Sum_probs=80.3
Q ss_pred CCCCCCEEEEEecCCCccHHHHHhhhCCCcEEEEEeCChHHHHHHHHHHHcC---CCeEEEEccCCCCcccccCCCcEeE
Q 021911 140 WIKPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKR---TNVIPIIEDARHPAKYRMLVGMVDV 216 (305)
Q Consensus 140 ~~~~g~~VLDlG~G~G~~t~~la~~~~~~~~V~avD~s~~~~~~l~~~a~~~---~nI~~~~~D~~~~~~~~~~~~~fD~ 216 (305)
...++.+|||+|||+|.++..+++. ...+|+++|+|+ .+++.++++ .++.+++.|+...+ ....+||+
T Consensus 40 ~~~~~~~vLdiG~G~G~~~~~l~~~--~~~~v~~vD~s~----~~~~~a~~~~~~~~~~~~~~d~~~~~---~~~~~fD~ 110 (243)
T 3bkw_A 40 PEVGGLRIVDLGCGFGWFCRWAHEH--GASYVLGLDLSE----KMLARARAAGPDTGITYERADLDKLH---LPQDSFDL 110 (243)
T ss_dssp CCCTTCEEEEETCTTCHHHHHHHHT--TCSEEEEEESCH----HHHHHHHHTSCSSSEEEEECCGGGCC---CCTTCEEE
T ss_pred cccCCCEEEEEcCcCCHHHHHHHHC--CCCeEEEEcCCH----HHHHHHHHhcccCCceEEEcChhhcc---CCCCCceE
Confidence 3457899999999999999999987 233899999999 555555554 47999999987654 22578999
Q ss_pred EEEeCC---ChhHHHHHHHHHhccCCCCcEEEEEEc
Q 021911 217 IFSDVA---QPDQARILALNASYFLKAGGHFVISIK 249 (305)
Q Consensus 217 V~~d~~---~~~~~~~l~~~a~~~LkpGG~lv~s~~ 249 (305)
|++... .++...++. ++.++|||||+|++++.
T Consensus 111 v~~~~~l~~~~~~~~~l~-~~~~~L~pgG~l~~~~~ 145 (243)
T 3bkw_A 111 AYSSLALHYVEDVARLFR-TVHQALSPGGHFVFSTE 145 (243)
T ss_dssp EEEESCGGGCSCHHHHHH-HHHHHEEEEEEEEEEEE
T ss_pred EEEeccccccchHHHHHH-HHHHhcCcCcEEEEEeC
Confidence 999766 356777777 99999999999999874
|
| >3tr6_A O-methyltransferase; cellular processes; HET: SAH; 2.70A {Coxiella burnetii} SCOP: c.66.1.0 | Back alignment and structure |
|---|
Probab=99.48 E-value=8.8e-14 Score=120.50 Aligned_cols=107 Identities=12% Similarity=0.183 Sum_probs=86.0
Q ss_pred CCCCCEEEEEecCCCccHHHHHhhhCCCcEEEEEeCChHHHHHHHHHHHcC---CCeEEEEccCCCCcccccC---CCcE
Q 021911 141 IKPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKR---TNVIPIIEDARHPAKYRML---VGMV 214 (305)
Q Consensus 141 ~~~g~~VLDlG~G~G~~t~~la~~~~~~~~V~avD~s~~~~~~l~~~a~~~---~nI~~~~~D~~~~~~~~~~---~~~f 214 (305)
..++.+|||+|||+|..+.++++.+.+.++|+++|+|+.+++.+.+.++.. .+|++++.|+.+..+.... ..+|
T Consensus 62 ~~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~f 141 (225)
T 3tr6_A 62 LMQAKKVIDIGTFTGYSAIAMGLALPKDGTLITCDVDEKSTALAKEYWEKAGLSDKIGLRLSPAKDTLAELIHAGQAWQY 141 (225)
T ss_dssp HHTCSEEEEECCTTSHHHHHHHTTCCTTCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCHHHHHHHHHTTTCTTCE
T ss_pred hhCCCEEEEeCCcchHHHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHHHCCCCCceEEEeCCHHHHHHHhhhccCCCCc
Confidence 456789999999999999999998755789999999997766666655543 4699999998654322100 1689
Q ss_pred eEEEEeCCChhHHHHHHHHHhccCCCCcEEEEEE
Q 021911 215 DVIFSDVAQPDQARILALNASYFLKAGGHFVISI 248 (305)
Q Consensus 215 D~V~~d~~~~~~~~~l~~~a~~~LkpGG~lv~s~ 248 (305)
|+|+++.+..+...++. ++.++|||||+|++..
T Consensus 142 D~v~~~~~~~~~~~~l~-~~~~~L~pgG~lv~~~ 174 (225)
T 3tr6_A 142 DLIYIDADKANTDLYYE-ESLKLLREGGLIAVDN 174 (225)
T ss_dssp EEEEECSCGGGHHHHHH-HHHHHEEEEEEEEEEC
T ss_pred cEEEECCCHHHHHHHHH-HHHHhcCCCcEEEEeC
Confidence 99999999888888887 9999999999999975
|
| >3jwh_A HEN1; methyltransferase; HET: SAH; 2.20A {Anabaena variabilis} PDB: 3jwj_A | Back alignment and structure |
|---|
Probab=99.48 E-value=8.7e-13 Score=113.65 Aligned_cols=103 Identities=14% Similarity=-0.049 Sum_probs=78.8
Q ss_pred CCCCCEEEEEecCCCccHHHHHhhhCCCcEEEEEeCChHHHHHHHHHHHcC-------CCeEEEEccCCCCcccccCCCc
Q 021911 141 IKPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKR-------TNVIPIIEDARHPAKYRMLVGM 213 (305)
Q Consensus 141 ~~~g~~VLDlG~G~G~~t~~la~~~~~~~~V~avD~s~~~~~~l~~~a~~~-------~nI~~~~~D~~~~~~~~~~~~~ 213 (305)
..++.+|||+|||+|.++..+++.. +..+|+++|+|+.+++.+.+.+... .++.+++.|+...+. ...+
T Consensus 27 ~~~~~~vLDiGcG~G~~~~~l~~~~-~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~---~~~~ 102 (217)
T 3jwh_A 27 QSNARRVIDLGCGQGNLLKILLKDS-FFEQITGVDVSYRSLEIAQERLDRLRLPRNQWERLQLIQGALTYQDK---RFHG 102 (217)
T ss_dssp HTTCCEEEEETCTTCHHHHHHHHCT-TCSEEEEEESCHHHHHHHHHHHTTCCCCHHHHTTEEEEECCTTSCCG---GGCS
T ss_pred hcCCCEEEEeCCCCCHHHHHHHhhC-CCCEEEEEECCHHHHHHHHHHHHHhcCCcccCcceEEEeCCcccccc---cCCC
Confidence 4577899999999999999999874 4569999999996665555554432 279999999865542 2478
Q ss_pred EeEEEEeCCC---h--hHHHHHHHHHhccCCCCcEEEEEE
Q 021911 214 VDVIFSDVAQ---P--DQARILALNASYFLKAGGHFVISI 248 (305)
Q Consensus 214 fD~V~~d~~~---~--~~~~~l~~~a~~~LkpGG~lv~s~ 248 (305)
||+|++.... + +...++. ++.++|||||.|+++.
T Consensus 103 fD~v~~~~~l~~~~~~~~~~~l~-~~~~~LkpgG~li~~~ 141 (217)
T 3jwh_A 103 YDAATVIEVIEHLDLSRLGAFER-VLFEFAQPKIVIVTTP 141 (217)
T ss_dssp CSEEEEESCGGGCCHHHHHHHHH-HHHTTTCCSEEEEEEE
T ss_pred cCEEeeHHHHHcCCHHHHHHHHH-HHHHHcCCCEEEEEcc
Confidence 9999987662 2 3466666 9999999999776654
|
| >3ntv_A MW1564 protein; rossmann fold, putative methyltransferase, transferase; HET: MSE; 1.55A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=99.47 E-value=1.9e-13 Score=119.58 Aligned_cols=104 Identities=17% Similarity=0.134 Sum_probs=86.2
Q ss_pred CCCCCEEEEEecCCCccHHHHHhhhCCCcEEEEEeCChHHHHHHHHHHHcC---CCeEEEEccCCCCcc-cccCCCcEeE
Q 021911 141 IKPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKR---TNVIPIIEDARHPAK-YRMLVGMVDV 216 (305)
Q Consensus 141 ~~~g~~VLDlG~G~G~~t~~la~~~~~~~~V~avD~s~~~~~~l~~~a~~~---~nI~~~~~D~~~~~~-~~~~~~~fD~ 216 (305)
..++.+|||+|||+|..+..+|... +..+|++||+|+.++..+.+.++.. ++|.+++.|+.+..+ . +..+||+
T Consensus 69 ~~~~~~vLDiG~G~G~~~~~la~~~-~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~--~~~~fD~ 145 (232)
T 3ntv_A 69 MNNVKNILEIGTAIGYSSMQFASIS-DDIHVTTIERNETMIQYAKQNLATYHFENQVRIIEGNALEQFENV--NDKVYDM 145 (232)
T ss_dssp HHTCCEEEEECCSSSHHHHHHHTTC-TTCEEEEEECCHHHHHHHHHHHHHTTCTTTEEEEESCGGGCHHHH--TTSCEEE
T ss_pred hcCCCEEEEEeCchhHHHHHHHHhC-CCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECCHHHHHHhh--ccCCccE
Confidence 4577899999999999999999954 5679999999997766666655544 489999999977543 2 2579999
Q ss_pred EEEeCCChhHHHHHHHHHhccCCCCcEEEEEE
Q 021911 217 IFSDVAQPDQARILALNASYFLKAGGHFVISI 248 (305)
Q Consensus 217 V~~d~~~~~~~~~l~~~a~~~LkpGG~lv~s~ 248 (305)
|+++.+......++. .+.++|||||+|++..
T Consensus 146 V~~~~~~~~~~~~l~-~~~~~LkpgG~lv~d~ 176 (232)
T 3ntv_A 146 IFIDAAKAQSKKFFE-IYTPLLKHQGLVITDN 176 (232)
T ss_dssp EEEETTSSSHHHHHH-HHGGGEEEEEEEEEEC
T ss_pred EEEcCcHHHHHHHHH-HHHHhcCCCeEEEEee
Confidence 999999888888887 9999999999998853
|
| >1kpg_A CFA synthase;, cyclopropane-fatty-acyl-phospholipid synthase 1; mixed alpha beta fold, structural genomics, PSI; HET: SAH 16A; 2.00A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 1kp9_A* 1kph_A* 1tpy_A* 1l1e_A* | Back alignment and structure |
|---|
Probab=99.47 E-value=1.3e-12 Score=117.23 Aligned_cols=104 Identities=16% Similarity=0.192 Sum_probs=82.6
Q ss_pred cccCCCCCCEEEEEecCCCccHHHHHhhhCCCcEEEEEeCChHHHHHHHHHHHcC---CCeEEEEccCCCCcccccCCCc
Q 021911 137 DNIWIKPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKR---TNVIPIIEDARHPAKYRMLVGM 213 (305)
Q Consensus 137 ~~~~~~~g~~VLDlG~G~G~~t~~la~~~~~~~~V~avD~s~~~~~~l~~~a~~~---~nI~~~~~D~~~~~~~~~~~~~ 213 (305)
+.+.+.++.+|||+|||+|.++..+++..+ .+|+++|+|+..+..+.+.++.. +++.+++.|+.+.+ .+
T Consensus 58 ~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~--~~v~gvd~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~------~~ 129 (287)
T 1kpg_A 58 GKLGLQPGMTLLDVGCGWGATMMRAVEKYD--VNVVGLTLSKNQANHVQQLVANSENLRSKRVLLAGWEQFD------EP 129 (287)
T ss_dssp TTTTCCTTCEEEEETCTTSHHHHHHHHHHC--CEEEEEESCHHHHHHHHHHHHTCCCCSCEEEEESCGGGCC------CC
T ss_pred HHcCCCCcCEEEEECCcccHHHHHHHHHcC--CEEEEEECCHHHHHHHHHHHHhcCCCCCeEEEECChhhCC------CC
Confidence 334577889999999999999999997764 49999999996665555555433 48999999986542 68
Q ss_pred EeEEEEeCC-----ChhHHHHHHHHHhccCCCCcEEEEEEc
Q 021911 214 VDVIFSDVA-----QPDQARILALNASYFLKAGGHFVISIK 249 (305)
Q Consensus 214 fD~V~~d~~-----~~~~~~~l~~~a~~~LkpGG~lv~s~~ 249 (305)
||+|++... .++...++. ++.++|||||+|++.+.
T Consensus 130 fD~v~~~~~l~~~~~~~~~~~l~-~~~~~LkpgG~l~~~~~ 169 (287)
T 1kpg_A 130 VDRIVSIGAFEHFGHERYDAFFS-LAHRLLPADGVMLLHTI 169 (287)
T ss_dssp CSEEEEESCGGGTCTTTHHHHHH-HHHHHSCTTCEEEEEEE
T ss_pred eeEEEEeCchhhcChHHHHHHHH-HHHHhcCCCCEEEEEEe
Confidence 999998654 256677777 99999999999999874
|
| >2nxc_A L11 mtase, ribosomal protein L11 methyltransferase; transferase S-adenosly-L-methionine dependent methyltransfer posttranslational modification; 1.59A {Thermus thermophilus} SCOP: c.66.1.39 PDB: 1ufk_A 2nxe_A* 2nxj_A 2nxn_A 2zbp_A* 2zbq_A* 2zbr_A* 3cjq_A* 3cjr_A* 3cju_A* 3egv_A* 3cjt_A* | Back alignment and structure |
|---|
Probab=99.47 E-value=5.2e-13 Score=118.62 Aligned_cols=135 Identities=16% Similarity=0.200 Sum_probs=99.3
Q ss_pred CCCCCEEEEEecCCCccHHHHHhhhCCCcEEEEEeCChHHHHHHHHHHHcCC-CeEEEEccCCCCcccccCCCcEeEEEE
Q 021911 141 IKPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKRT-NVIPIIEDARHPAKYRMLVGMVDVIFS 219 (305)
Q Consensus 141 ~~~g~~VLDlG~G~G~~t~~la~~~~~~~~V~avD~s~~~~~~l~~~a~~~~-nI~~~~~D~~~~~~~~~~~~~fD~V~~ 219 (305)
+.++.+|||+|||+|.++..+++. +. +|+++|+|+.++..+.++++.+. ++.+++.|+.... ...+||+|++
T Consensus 118 ~~~~~~VLDiGcG~G~l~~~la~~-g~--~v~gvDi~~~~v~~a~~n~~~~~~~v~~~~~d~~~~~----~~~~fD~Vv~ 190 (254)
T 2nxc_A 118 LRPGDKVLDLGTGSGVLAIAAEKL-GG--KALGVDIDPMVLPQAEANAKRNGVRPRFLEGSLEAAL----PFGPFDLLVA 190 (254)
T ss_dssp CCTTCEEEEETCTTSHHHHHHHHT-TC--EEEEEESCGGGHHHHHHHHHHTTCCCEEEESCHHHHG----GGCCEEEEEE
T ss_pred cCCCCEEEEecCCCcHHHHHHHHh-CC--eEEEEECCHHHHHHHHHHHHHcCCcEEEEECChhhcC----cCCCCCEEEE
Confidence 567899999999999999998886 33 99999999977777766665542 2888888876531 2468999999
Q ss_pred eCCChhHHHHHHHHHhccCCCCcEEEEEEcccccCCCCchhhhHHHHHHHHHHCCCcEeEEeecCCCCCceEEEEEE
Q 021911 220 DVAQPDQARILALNASYFLKAGGHFVISIKANCIDSTVPAEAVFQSEVKKLQQDQFKPFEQVTLEPFERDHACVVGG 296 (305)
Q Consensus 220 d~~~~~~~~~l~~~a~~~LkpGG~lv~s~~~~~i~~~~~~~~v~~~~~~~l~~~Gf~~~e~~~l~p~~~~~~~vv~~ 296 (305)
+.+......++. ++.++|||||+|+++.... . ......+.+++.||++.+..... ++..++++
T Consensus 191 n~~~~~~~~~l~-~~~~~LkpgG~lils~~~~---~------~~~~v~~~l~~~Gf~~~~~~~~~----~W~~l~~~ 253 (254)
T 2nxc_A 191 NLYAELHAALAP-RYREALVPGGRALLTGILK---D------RAPLVREAMAGAGFRPLEEAAEG----EWVLLAYG 253 (254)
T ss_dssp ECCHHHHHHHHH-HHHHHEEEEEEEEEEEEEG---G------GHHHHHHHHHHTTCEEEEEEEET----TEEEEEEE
T ss_pred CCcHHHHHHHHH-HHHHHcCCCCEEEEEeecc---C------CHHHHHHHHHHCCCEEEEEeccC----CeEEEEEE
Confidence 987666666666 9999999999999986211 0 11223466788999998876543 34555554
|
| >4dzr_A Protein-(glutamine-N5) methyltransferase, release specific; structural genomics, PSI-biology; 2.55A {Alicyclobacillus acidocaldarius subsp} | Back alignment and structure |
|---|
Probab=99.47 E-value=5.3e-14 Score=120.13 Aligned_cols=161 Identities=16% Similarity=0.075 Sum_probs=93.8
Q ss_pred chhhHHHHHHHccccccCCCCCCEEEEEecCCCccHHHHHhhhCCCcEEEEEeCChHHHHHHHHHHHcC-CCeEEEEccC
Q 021911 123 PFRSKLAAAVLGGVDNIWIKPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKR-TNVIPIIEDA 201 (305)
Q Consensus 123 ~~~s~l~a~ll~~l~~~~~~~g~~VLDlG~G~G~~t~~la~~~~~~~~V~avD~s~~~~~~l~~~a~~~-~nI~~~~~D~ 201 (305)
|....+...++..+. ...++.+|||+|||+|.++..+++.. +..+|+++|+|+.++..+.+.+... .++.+++.|+
T Consensus 12 ~~~~~~~~~~~~~l~--~~~~~~~vLDiG~G~G~~~~~l~~~~-~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~d~ 88 (215)
T 4dzr_A 12 PDTEVLVEEAIRFLK--RMPSGTRVIDVGTGSGCIAVSIALAC-PGVSVTAVDLSMDALAVARRNAERFGAVVDWAAADG 88 (215)
T ss_dssp HHHHHHHHHHHHHHT--TCCTTEEEEEEESSBCHHHHHHHHHC-TTEEEEEEECC-------------------CCHHHH
T ss_pred ccHHHHHHHHHHHhh--hcCCCCEEEEecCCHhHHHHHHHHhC-CCCeEEEEECCHHHHHHHHHHHHHhCCceEEEEcch
Confidence 334556666654443 22678999999999999999999985 5679999999994443333333222 1678888888
Q ss_pred CCCccc-ccCCCcEeEEEEeCCChh-----------------------------HHHHHHHHHhccCCCCcE-EEEEEcc
Q 021911 202 RHPAKY-RMLVGMVDVIFSDVAQPD-----------------------------QARILALNASYFLKAGGH-FVISIKA 250 (305)
Q Consensus 202 ~~~~~~-~~~~~~fD~V~~d~~~~~-----------------------------~~~~l~~~a~~~LkpGG~-lv~s~~~ 250 (305)
.++... .....+||+|++|+|... ...++. ++.++|||||+ +++.+.
T Consensus 89 ~~~~~~~~~~~~~fD~i~~npp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~~~~LkpgG~l~~~~~~- 166 (215)
T 4dzr_A 89 IEWLIERAERGRPWHAIVSNPPYIPTGEIDQLEPSVRDYEPRLALDGGEDGLQFYRRMAA-LPPYVLARGRAGVFLEVG- 166 (215)
T ss_dssp HHHHHHHHHTTCCBSEEEECCCCCC------------------------CTTHHHHHHHT-CCGGGBCSSSEEEEEECT-
T ss_pred HhhhhhhhhccCcccEEEECCCCCCCccccccChhhhccCccccccCCCcHHHHHHHHHH-HHHHHhcCCCeEEEEEEC-
Confidence 763211 011379999999987311 044555 88999999999 555541
Q ss_pred cccCCCCchhhhHHHHHHHHH--HCCCcEeEEeecCCCCCceEEEEEEEcC
Q 021911 251 NCIDSTVPAEAVFQSEVKKLQ--QDQFKPFEQVTLEPFERDHACVVGGYRM 299 (305)
Q Consensus 251 ~~i~~~~~~~~v~~~~~~~l~--~~Gf~~~e~~~l~p~~~~~~~vv~~~~~ 299 (305)
.... ....+.++ +.+|..++... .+....-++++.++.
T Consensus 167 -----~~~~----~~~~~~l~~~~~gf~~~~~~~--~~~~~~r~~~~~~~~ 206 (215)
T 4dzr_A 167 -----HNQA----DEVARLFAPWRERGFRVRKVK--DLRGIDRVIAVTREP 206 (215)
T ss_dssp -----TSCH----HHHHHHTGGGGGGTEECCEEE--CTTSCEEEEEEEECC
T ss_pred -----CccH----HHHHHHHHHhhcCCceEEEEE--ecCCCEEEEEEEEcC
Confidence 1111 12234556 77887766543 233335566776654
|
| >3q87_B N6 adenine specific DNA methylase; SAM-methyltransferase, methyltransferase, methylation, trans activator-transferase complex; HET: SAM; 2.00A {Encephalitozoon cuniculi} | Back alignment and structure |
|---|
Probab=99.47 E-value=5e-13 Score=111.44 Aligned_cols=131 Identities=9% Similarity=0.028 Sum_probs=92.3
Q ss_pred CCCCEEEEEecCCCccHHHHHhhhCCCcEEEEEeCChHHHHHHHHHHHcCCCeEEEEccCCCCcccccCCCcEeEEEEeC
Q 021911 142 KPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKRTNVIPIIEDARHPAKYRMLVGMVDVIFSDV 221 (305)
Q Consensus 142 ~~g~~VLDlG~G~G~~t~~la~~~~~~~~V~avD~s~~~~~~l~~~a~~~~nI~~~~~D~~~~~~~~~~~~~fD~V~~d~ 221 (305)
.++.+|||+|||+|.++..+++.. +|+++|+|+ .+++. ..++.+++.|+.++.. ..+||+|++++
T Consensus 22 ~~~~~vLD~GcG~G~~~~~l~~~~----~v~gvD~s~----~~~~~---~~~~~~~~~d~~~~~~----~~~fD~i~~n~ 86 (170)
T 3q87_B 22 LEMKIVLDLGTSTGVITEQLRKRN----TVVSTDLNI----RALES---HRGGNLVRADLLCSIN----QESVDVVVFNP 86 (170)
T ss_dssp CCSCEEEEETCTTCHHHHHHTTTS----EEEEEESCH----HHHHT---CSSSCEEECSTTTTBC----GGGCSEEEECC
T ss_pred CCCCeEEEeccCccHHHHHHHhcC----cEEEEECCH----HHHhc---ccCCeEEECChhhhcc----cCCCCEEEECC
Confidence 467799999999999999999873 899999999 44444 5689999999987432 36899999998
Q ss_pred CCh------------hHHHHHHHHHhccCCCCcEEEEEEcccccCCCCchhhhHHHHHHHHHHCCCcEeEEeecCCCCCc
Q 021911 222 AQP------------DQARILALNASYFLKAGGHFVISIKANCIDSTVPAEAVFQSEVKKLQQDQFKPFEQVTLEPFERD 289 (305)
Q Consensus 222 ~~~------------~~~~~l~~~a~~~LkpGG~lv~s~~~~~i~~~~~~~~v~~~~~~~l~~~Gf~~~e~~~l~p~~~~ 289 (305)
+.. +...++. ++.+.| |+|.+++++... .......+.+++.||+..++...... .+
T Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~l-pgG~l~~~~~~~---------~~~~~l~~~l~~~gf~~~~~~~~~~~-~e 154 (170)
T 3q87_B 87 PYVPDTDDPIIGGGYLGREVID-RFVDAV-TVGMLYLLVIEA---------NRPKEVLARLEERGYGTRILKVRKIL-GE 154 (170)
T ss_dssp CCBTTCCCTTTBCCGGGCHHHH-HHHHHC-CSSEEEEEEEGG---------GCHHHHHHHHHHTTCEEEEEEEEECS-SS
T ss_pred CCccCCccccccCCcchHHHHH-HHHhhC-CCCEEEEEEecC---------CCHHHHHHHHHHCCCcEEEEEeeccC-Cc
Confidence 832 2345555 677777 999999987211 11122346678899998876543222 23
Q ss_pred eEEEEEEEcCC
Q 021911 290 HACVVGGYRMP 300 (305)
Q Consensus 290 ~~~vv~~~~~~ 300 (305)
-+++.++.++
T Consensus 155 -~~~~~~~~~~ 164 (170)
T 3q87_B 155 -TVYIIKGEKS 164 (170)
T ss_dssp -EEEEEEEECC
T ss_pred -eEEEEEEecc
Confidence 3344554444
|
| >1vlm_A SAM-dependent methyltransferase; possible histamine methyltransferase, structural genomics, JCSG, protein struc initiative, PSI; 2.20A {Thermotoga maritima} SCOP: c.66.1.41 | Back alignment and structure |
|---|
Probab=99.47 E-value=5.2e-13 Score=115.43 Aligned_cols=124 Identities=22% Similarity=0.252 Sum_probs=89.0
Q ss_pred CCCEEEEEecCCCccHHHHHhhhCCCcEEEEEeCChHHHHHHHHHHHcCCCeEEEEccCCCCcccccCCCcEeEEEEeCC
Q 021911 143 PGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKRTNVIPIIEDARHPAKYRMLVGMVDVIFSDVA 222 (305)
Q Consensus 143 ~g~~VLDlG~G~G~~t~~la~~~~~~~~V~avD~s~~~~~~l~~~a~~~~nI~~~~~D~~~~~~~~~~~~~fD~V~~d~~ 222 (305)
++.+|||+|||+|.++..++.. +++|+|+ .+++.++++ ++.+++.|+...+ ....+||+|++...
T Consensus 47 ~~~~vLDiG~G~G~~~~~l~~~-------~~vD~s~----~~~~~a~~~-~~~~~~~d~~~~~---~~~~~fD~v~~~~~ 111 (219)
T 1vlm_A 47 PEGRGVEIGVGTGRFAVPLKIK-------IGVEPSE----RMAEIARKR-GVFVLKGTAENLP---LKDESFDFALMVTT 111 (219)
T ss_dssp CSSCEEEETCTTSTTHHHHTCC-------EEEESCH----HHHHHHHHT-TCEEEECBTTBCC---SCTTCEEEEEEESC
T ss_pred CCCcEEEeCCCCCHHHHHHHHH-------hccCCCH----HHHHHHHhc-CCEEEEcccccCC---CCCCCeeEEEEcch
Confidence 3789999999999999887653 9999999 667777665 8999999987654 23468999999766
Q ss_pred ---ChhHHHHHHHHHhccCCCCcEEEEEEcccccC-----------CC--Cchhh-hHHHHHHHHHHCCCcEeEEee
Q 021911 223 ---QPDQARILALNASYFLKAGGHFVISIKANCID-----------ST--VPAEA-VFQSEVKKLQQDQFKPFEQVT 282 (305)
Q Consensus 223 ---~~~~~~~l~~~a~~~LkpGG~lv~s~~~~~i~-----------~~--~~~~~-v~~~~~~~l~~~Gf~~~e~~~ 282 (305)
.++...++. ++.++|||||.|++++...... .. ..... ...+..+.|+++||++++...
T Consensus 112 l~~~~~~~~~l~-~~~~~L~pgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~Gf~~~~~~~ 187 (219)
T 1vlm_A 112 ICFVDDPERALK-EAYRILKKGGYLIVGIVDRESFLGREYEKNKEKSVFYKNARFFSTEELMDLMRKAGFEEFKVVQ 187 (219)
T ss_dssp GGGSSCHHHHHH-HHHHHEEEEEEEEEEEECSSSHHHHHHHHTTTC-CCSTTCCCCCHHHHHHHHHHTTCEEEEEEE
T ss_pred HhhccCHHHHHH-HHHHHcCCCcEEEEEEeCCccHHHHHHHHHhcCcchhcccccCCHHHHHHHHHHCCCeEEEEec
Confidence 456677777 9999999999999987422100 00 00000 112224566889999887654
|
| >3g2m_A PCZA361.24; SAM-dependent methyltransferase, glycopeptide antibiotics biosynthesis, structural genomics; 2.00A {Amycolatopsis orientalis} PDB: 3g2o_A* 3g2p_A* 3g2q_A* | Back alignment and structure |
|---|
Probab=99.47 E-value=5.2e-13 Score=120.94 Aligned_cols=98 Identities=19% Similarity=0.184 Sum_probs=76.9
Q ss_pred CCEEEEEecCCCccHHHHHhhhCCCcEEEEEeCChHHHHHHHHHHHcC-----CCeEEEEccCCCCcccccCCCcEeEEE
Q 021911 144 GARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKR-----TNVIPIIEDARHPAKYRMLVGMVDVIF 218 (305)
Q Consensus 144 g~~VLDlG~G~G~~t~~la~~~~~~~~V~avD~s~~~~~~l~~~a~~~-----~nI~~~~~D~~~~~~~~~~~~~fD~V~ 218 (305)
..+|||||||+|.++..+++. ..+|+++|+|+.+++.+.+.+... .+|.+++.|+.+.+. ..+||+|+
T Consensus 83 ~~~vLDlGcG~G~~~~~l~~~---~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~v~~~~~d~~~~~~----~~~fD~v~ 155 (299)
T 3g2m_A 83 SGPVLELAAGMGRLTFPFLDL---GWEVTALELSTSVLAAFRKRLAEAPADVRDRCTLVQGDMSAFAL----DKRFGTVV 155 (299)
T ss_dssp CSCEEEETCTTTTTHHHHHTT---TCCEEEEESCHHHHHHHHHHHHTSCHHHHTTEEEEECBTTBCCC----SCCEEEEE
T ss_pred CCcEEEEeccCCHHHHHHHHc---CCeEEEEECCHHHHHHHHHHHhhcccccccceEEEeCchhcCCc----CCCcCEEE
Confidence 459999999999999999987 258999999996666555555443 579999999987642 57999998
Q ss_pred EeCC-----Ch-hHHHHHHHHHhccCCCCcEEEEEEc
Q 021911 219 SDVA-----QP-DQARILALNASYFLKAGGHFVISIK 249 (305)
Q Consensus 219 ~d~~-----~~-~~~~~l~~~a~~~LkpGG~lv~s~~ 249 (305)
+... .+ +...++. ++.++|||||+|++++.
T Consensus 156 ~~~~~~~~~~~~~~~~~l~-~~~~~L~pgG~l~~~~~ 191 (299)
T 3g2m_A 156 ISSGSINELDEADRRGLYA-SVREHLEPGGKFLLSLA 191 (299)
T ss_dssp ECHHHHTTSCHHHHHHHHH-HHHHHEEEEEEEEEEEE
T ss_pred ECCcccccCCHHHHHHHHH-HHHHHcCCCcEEEEEee
Confidence 6422 22 3466666 99999999999999874
|
| >2esr_A Methyltransferase; structural genomics, hypothetical protein, streptococcus PYO PSI, protein structure initiative; HET: GLC; 1.80A {Streptococcus pyogenes} SCOP: c.66.1.46 | Back alignment and structure |
|---|
Probab=99.46 E-value=1.3e-13 Score=114.93 Aligned_cols=119 Identities=18% Similarity=0.145 Sum_probs=84.2
Q ss_pred chhhHHHHHHHccccccCCCCCCEEEEEecCCCccHHHHHhhhCCCcEEEEEeCChHHHHHHHHHHHcC---CCeEEEEc
Q 021911 123 PFRSKLAAAVLGGVDNIWIKPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKR---TNVIPIIE 199 (305)
Q Consensus 123 ~~~s~l~a~ll~~l~~~~~~~g~~VLDlG~G~G~~t~~la~~~~~~~~V~avD~s~~~~~~l~~~a~~~---~nI~~~~~ 199 (305)
|....+...++..+. ...++.+|||+|||+|.++..+++. +..+|+++|+|+.+++.+.+.++.. +++.+++.
T Consensus 13 p~~~~~~~~~~~~l~--~~~~~~~vLDlGcG~G~~~~~l~~~--~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~ 88 (177)
T 2esr_A 13 PTSDKVRGAIFNMIG--PYFNGGRVLDLFAGSGGLAIEAVSR--GMSAAVLVEKNRKAQAIIQDNIIMTKAENRFTLLKM 88 (177)
T ss_dssp -----CHHHHHHHHC--SCCCSCEEEEETCTTCHHHHHHHHT--TCCEEEEECCCHHHHHHHHHHHHTTTCGGGEEEECS
T ss_pred cCHHHHHHHHHHHHH--hhcCCCeEEEeCCCCCHHHHHHHHc--CCCEEEEEECCHHHHHHHHHHHHHcCCCCceEEEEC
Confidence 334444555544333 2456789999999999999999987 4569999999997766666666554 36999999
Q ss_pred cCCCCcccccCCCcEeEEEEeCCC--hhHHHHHHHHHh--ccCCCCcEEEEEE
Q 021911 200 DARHPAKYRMLVGMVDVIFSDVAQ--PDQARILALNAS--YFLKAGGHFVISI 248 (305)
Q Consensus 200 D~~~~~~~~~~~~~fD~V~~d~~~--~~~~~~l~~~a~--~~LkpGG~lv~s~ 248 (305)
|+.+..+. ....||+|+++++. ....+.+. .+. ++|||||.|++++
T Consensus 89 d~~~~~~~--~~~~fD~i~~~~~~~~~~~~~~~~-~l~~~~~L~~gG~l~~~~ 138 (177)
T 2esr_A 89 EAERAIDC--LTGRFDLVFLDPPYAKETIVATIE-ALAAKNLLSEQVMVVCET 138 (177)
T ss_dssp CHHHHHHH--BCSCEEEEEECCSSHHHHHHHHHH-HHHHTTCEEEEEEEEEEE
T ss_pred cHHHhHHh--hcCCCCEEEECCCCCcchHHHHHH-HHHhCCCcCCCcEEEEEE
Confidence 98764321 24579999999885 23334444 554 9999999999987
|
| >2fk8_A Methoxy mycolic acid synthase 4; S-adenosylmethionine-dependent methyltransferase fold, trans; HET: SAM; 2.00A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 2fk7_A* 3ha3_A* 3ha5_A* 3ha7_A* | Back alignment and structure |
|---|
Probab=99.46 E-value=1.3e-12 Score=119.33 Aligned_cols=104 Identities=18% Similarity=0.204 Sum_probs=83.3
Q ss_pred cccCCCCCCEEEEEecCCCccHHHHHhhhCCCcEEEEEeCChHHHHHHHHHHHcC---CCeEEEEccCCCCcccccCCCc
Q 021911 137 DNIWIKPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKR---TNVIPIIEDARHPAKYRMLVGM 213 (305)
Q Consensus 137 ~~~~~~~g~~VLDlG~G~G~~t~~la~~~~~~~~V~avD~s~~~~~~l~~~a~~~---~nI~~~~~D~~~~~~~~~~~~~ 213 (305)
+.+.+.++.+|||+|||+|.++..+++.++ .+|+++|+|+..+..+.+.++.. +++.+++.|+.+.+ .+
T Consensus 84 ~~~~~~~~~~vLDiGcG~G~~~~~la~~~~--~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~------~~ 155 (318)
T 2fk8_A 84 DKLDLKPGMTLLDIGCGWGTTMRRAVERFD--VNVIGLTLSKNQHARCEQVLASIDTNRSRQVLLQGWEDFA------EP 155 (318)
T ss_dssp TTSCCCTTCEEEEESCTTSHHHHHHHHHHC--CEEEEEESCHHHHHHHHHHHHTSCCSSCEEEEESCGGGCC------CC
T ss_pred HhcCCCCcCEEEEEcccchHHHHHHHHHCC--CEEEEEECCHHHHHHHHHHHHhcCCCCceEEEECChHHCC------CC
Confidence 334577899999999999999999998863 59999999996666555555443 46999999986542 68
Q ss_pred EeEEEEeCC-----ChhHHHHHHHHHhccCCCCcEEEEEEc
Q 021911 214 VDVIFSDVA-----QPDQARILALNASYFLKAGGHFVISIK 249 (305)
Q Consensus 214 fD~V~~d~~-----~~~~~~~l~~~a~~~LkpGG~lv~s~~ 249 (305)
||+|++... .++...++. ++.++|||||+|++.+.
T Consensus 156 fD~v~~~~~l~~~~~~~~~~~l~-~~~~~LkpgG~l~~~~~ 195 (318)
T 2fk8_A 156 VDRIVSIEAFEHFGHENYDDFFK-RCFNIMPADGRMTVQSS 195 (318)
T ss_dssp CSEEEEESCGGGTCGGGHHHHHH-HHHHHSCTTCEEEEEEE
T ss_pred cCEEEEeChHHhcCHHHHHHHHH-HHHHhcCCCcEEEEEEe
Confidence 999998754 256777787 99999999999999874
|
| >3g5t_A Trans-aconitate 3-methyltransferase; structural genomics, protein structure initiative, PSI, center for eukaryotic structural genomics; HET: MSE SAH T8N; 1.12A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.46 E-value=1.7e-13 Score=124.16 Aligned_cols=108 Identities=14% Similarity=0.048 Sum_probs=85.1
Q ss_pred CCCCCCEEEEEecCCCccHHHHHhhhCCCcEEEEEeCChHHHHHHHHHHHc----CCCeEEEEccCCCCcccc---cCCC
Q 021911 140 WIKPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKK----RTNVIPIIEDARHPAKYR---MLVG 212 (305)
Q Consensus 140 ~~~~g~~VLDlG~G~G~~t~~la~~~~~~~~V~avD~s~~~~~~l~~~a~~----~~nI~~~~~D~~~~~~~~---~~~~ 212 (305)
...++.+|||+|||+|.++..+++.+.+..+|+++|+|+.++..+.+.++. ..++.+++.|+.+.+... ...+
T Consensus 33 ~~~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~ 112 (299)
T 3g5t_A 33 HDGERKLLVDVGCGPGTATLQMAQELKPFEQIIGSDLSATMIKTAEVIKEGSPDTYKNVSFKISSSDDFKFLGADSVDKQ 112 (299)
T ss_dssp CCSCCSEEEEETCTTTHHHHHHHHHSSCCSEEEEEESCHHHHHHHHHHHHHCC-CCTTEEEEECCTTCCGGGCTTTTTSS
T ss_pred hcCCCCEEEEECCCCCHHHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHHhccCCCCceEEEEcCHHhCCccccccccCC
Confidence 346789999999999999999998764677999999999766666655544 368999999998765321 0126
Q ss_pred cEeEEEEeCC--ChhHHHHHHHHHhccCCCCcEEEEEE
Q 021911 213 MVDVIFSDVA--QPDQARILALNASYFLKAGGHFVISI 248 (305)
Q Consensus 213 ~fD~V~~d~~--~~~~~~~l~~~a~~~LkpGG~lv~s~ 248 (305)
+||+|++... +.+...++. ++.++|||||.|++.+
T Consensus 113 ~fD~V~~~~~l~~~~~~~~l~-~~~~~LkpgG~l~i~~ 149 (299)
T 3g5t_A 113 KIDMITAVECAHWFDFEKFQR-SAYANLRKDGTIAIWG 149 (299)
T ss_dssp CEEEEEEESCGGGSCHHHHHH-HHHHHEEEEEEEEEEE
T ss_pred CeeEEeHhhHHHHhCHHHHHH-HHHHhcCCCcEEEEEe
Confidence 9999999766 226777777 9999999999999854
|
| >1ej0_A FTSJ; methyltransferase, adoMet, adenosyl methionine, heat shock proteins, 23S ribosomal RNA; HET: SAM; 1.50A {Escherichia coli} SCOP: c.66.1.2 PDB: 1eiz_A* | Back alignment and structure |
|---|
Probab=99.46 E-value=3.8e-13 Score=110.79 Aligned_cols=140 Identities=22% Similarity=0.234 Sum_probs=94.9
Q ss_pred CCCCCCEEEEEecCCCccHHHHHhhhCCCcEEEEEeCChHHHHHHHHHHHcCCCeEEEEccCCCCcc-----cccCCCcE
Q 021911 140 WIKPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKRTNVIPIIEDARHPAK-----YRMLVGMV 214 (305)
Q Consensus 140 ~~~~g~~VLDlG~G~G~~t~~la~~~~~~~~V~avD~s~~~~~~l~~~a~~~~nI~~~~~D~~~~~~-----~~~~~~~f 214 (305)
.+.++.+|||+|||+|.++..+++.+++..+|+++|+|+ .. ...++.+++.|+.+.+. ......+|
T Consensus 19 ~~~~~~~vLd~G~G~G~~~~~l~~~~~~~~~v~~~D~~~-~~--------~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~ 89 (180)
T 1ej0_A 19 LFKPGMTVVDLGAAPGGWSQYVVTQIGGKGRIIACDLLP-MD--------PIVGVDFLQGDFRDELVMKALLERVGDSKV 89 (180)
T ss_dssp CCCTTCEEEEESCTTCHHHHHHHHHHCTTCEEEEEESSC-CC--------CCTTEEEEESCTTSHHHHHHHHHHHTTCCE
T ss_pred CCCCCCeEEEeCCCCCHHHHHHHHHhCCCCeEEEEECcc-cc--------ccCcEEEEEcccccchhhhhhhccCCCCce
Confidence 367889999999999999999999876667999999998 32 12689999999987631 00124689
Q ss_pred eEEEEeCCCh---hH-----------HHHHHHHHhccCCCCcEEEEEEcccccCCCCchhhhHHHHHHHHHHCCCcEeEE
Q 021911 215 DVIFSDVAQP---DQ-----------ARILALNASYFLKAGGHFVISIKANCIDSTVPAEAVFQSEVKKLQQDQFKPFEQ 280 (305)
Q Consensus 215 D~V~~d~~~~---~~-----------~~~l~~~a~~~LkpGG~lv~s~~~~~i~~~~~~~~v~~~~~~~l~~~Gf~~~e~ 280 (305)
|+|+++.+.. .. ..++. ++.++|||||.+++++... ... ....+.+++. |+.++.
T Consensus 90 D~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~~~~L~~gG~l~~~~~~~-----~~~----~~~~~~~~~~-~~~~~~ 158 (180)
T 1ej0_A 90 QVVMSDMAPNMSGTPAVDIPRAMYLVELALE-MCRDVLAPGGSFVVKVFQG-----EGF----DEYLREIRSL-FTKVKV 158 (180)
T ss_dssp EEEEECCCCCCCSCHHHHHHHHHHHHHHHHH-HHHHHEEEEEEEEEEEESS-----TTH----HHHHHHHHHH-EEEEEE
T ss_pred eEEEECCCccccCCCccchHHHHHHHHHHHH-HHHHHcCCCcEEEEEEecC-----CcH----HHHHHHHHHh-hhhEEe
Confidence 9999987621 11 45565 8999999999999987311 111 1223344443 665554
Q ss_pred eec--CCCCCceEEEEEEEcC
Q 021911 281 VTL--EPFERDHACVVGGYRM 299 (305)
Q Consensus 281 ~~l--~p~~~~~~~vv~~~~~ 299 (305)
... ...+..+.++++...+
T Consensus 159 ~~~~~~~~~~~~~~~~~~~~~ 179 (180)
T 1ej0_A 159 RKPDSSRARSREVYIVATGRK 179 (180)
T ss_dssp ECCTTSCTTCCEEEEEEEEEC
T ss_pred ecCCcccccCceEEEEEccCC
Confidence 422 1233456667776655
|
| >1inl_A Spermidine synthase; beta-barrel, rossman fold, structural genomics, PSI, protein structure initiative; 1.50A {Thermotoga maritima} SCOP: c.66.1.17 PDB: 1jq3_A* | Back alignment and structure |
|---|
Probab=99.46 E-value=1.6e-12 Score=118.14 Aligned_cols=148 Identities=14% Similarity=0.098 Sum_probs=100.8
Q ss_pred CCCEEEEEecCCCccHHHHHhhhCCCcEEEEEeCChHHHHHHHHHHHc------CCCeEEEEccCCCCcccccCCCcEeE
Q 021911 143 PGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKK------RTNVIPIIEDARHPAKYRMLVGMVDV 216 (305)
Q Consensus 143 ~g~~VLDlG~G~G~~t~~la~~~~~~~~V~avD~s~~~~~~l~~~a~~------~~nI~~~~~D~~~~~~~~~~~~~fD~ 216 (305)
...+|||||||+|.++..+++.. +..+|++||+|+..++.+.+.... .+++++++.|+...... ...+||+
T Consensus 90 ~~~~VLdiG~G~G~~~~~l~~~~-~~~~v~~vDid~~~~~~a~~~~~~~~~~~~~~~v~~~~~D~~~~l~~--~~~~fD~ 166 (296)
T 1inl_A 90 NPKKVLIIGGGDGGTLREVLKHD-SVEKAILCEVDGLVIEAARKYLKQTSCGFDDPRAEIVIANGAEYVRK--FKNEFDV 166 (296)
T ss_dssp SCCEEEEEECTTCHHHHHHTTST-TCSEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHHGGG--CSSCEEE
T ss_pred CCCEEEEEcCCcCHHHHHHHhcC-CCCEEEEEECCHHHHHHHHHHhHhhccccCCCceEEEECcHHHHHhh--CCCCceE
Confidence 34899999999999999999874 456999999999766655554422 36899999998664322 2468999
Q ss_pred EEEeCCCh--------hHHHHHHHHHhccCCCCcEEEEEEcccccCCCCchhhhHHHHHHHHHHCCCcEeEEe--ecCCC
Q 021911 217 IFSDVAQP--------DQARILALNASYFLKAGGHFVISIKANCIDSTVPAEAVFQSEVKKLQQDQFKPFEQV--TLEPF 286 (305)
Q Consensus 217 V~~d~~~~--------~~~~~l~~~a~~~LkpGG~lv~s~~~~~i~~~~~~~~v~~~~~~~l~~~Gf~~~e~~--~l~p~ 286 (305)
|++|++.+ .+.+++. ++.++|||||.|++.+ ++... ....+...++.|++. |...+.. .+..|
T Consensus 167 Ii~d~~~~~~~~~~~l~~~~~l~-~~~~~LkpgG~lv~~~--~~~~~---~~~~~~~~~~~l~~~-F~~v~~~~~~vp~~ 239 (296)
T 1inl_A 167 IIIDSTDPTAGQGGHLFTEEFYQ-ACYDALKEDGVFSAET--EDPFY---DIGWFKLAYRRISKV-FPITRVYLGFMTTY 239 (296)
T ss_dssp EEEEC----------CCSHHHHH-HHHHHEEEEEEEEEEC--CCTTT---THHHHHHHHHHHHHH-CSEEEEEEEECTTS
T ss_pred EEEcCCCcccCchhhhhHHHHHH-HHHHhcCCCcEEEEEc--cCccc---CHHHHHHHHHHHHHH-CCceEEEEeecCcc
Confidence 99998765 2356676 9999999999999986 22111 122344445666655 6655543 34445
Q ss_pred -CCceEEEEEEEcCC
Q 021911 287 -ERDHACVVGGYRMP 300 (305)
Q Consensus 287 -~~~~~~vv~~~~~~ 300 (305)
.....++++.++..
T Consensus 240 p~g~~~f~~as~~~~ 254 (296)
T 1inl_A 240 PSGMWSYTFASKGID 254 (296)
T ss_dssp TTSEEEEEEEESSCC
T ss_pred CCCceEEEEecCCCC
Confidence 45566777876533
|
| >3ckk_A TRNA (guanine-N(7)-)-methyltransferase; mettl1, S-adenosyl-L-methionine, tRNA Pro structural genomics, structural genomics consortium, SGC; HET: SAM; 1.55A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.46 E-value=4.7e-13 Score=117.76 Aligned_cols=106 Identities=15% Similarity=0.249 Sum_probs=80.1
Q ss_pred CCCCCEEEEEecCCCccHHHHHhhhCCCcEEEEEeCChHHHHHHHHHHHc--------CCCeEEEEccCCCCcccccCCC
Q 021911 141 IKPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKK--------RTNVIPIIEDARHPAKYRMLVG 212 (305)
Q Consensus 141 ~~~g~~VLDlG~G~G~~t~~la~~~~~~~~V~avD~s~~~~~~l~~~a~~--------~~nI~~~~~D~~~~~~~~~~~~ 212 (305)
..+..+|||||||+|.++..+|... +...|++||+|+.++..+.+.++. ..||.+++.|+....+..+...
T Consensus 44 ~~~~~~vLDiGcG~G~~~~~la~~~-p~~~v~GiDis~~~l~~A~~~~~~l~~~~~~~~~nv~~~~~d~~~~l~~~~~~~ 122 (235)
T 3ckk_A 44 AQAQVEFADIGCGYGGLLVELSPLF-PDTLILGLEIRVKVSDYVQDRIRALRAAPAGGFQNIACLRSNAMKHLPNFFYKG 122 (235)
T ss_dssp --CCEEEEEETCTTCHHHHHHGGGS-TTSEEEEEESCHHHHHHHHHHHHHHHHSTTCCCTTEEEEECCTTTCHHHHCCTT
T ss_pred cCCCCeEEEEccCCcHHHHHHHHHC-CCCeEEEEECCHHHHHHHHHHHHHHHHHHhcCCCeEEEEECcHHHhhhhhCCCc
Confidence 4567899999999999999999875 567999999999766655444331 2689999999987322112357
Q ss_pred cEeEEEEeCCChhH-----------HHHHHHHHhccCCCCcEEEEEE
Q 021911 213 MVDVIFSDVAQPDQ-----------ARILALNASYFLKAGGHFVISI 248 (305)
Q Consensus 213 ~fD~V~~d~~~~~~-----------~~~l~~~a~~~LkpGG~lv~s~ 248 (305)
+||+|+++.+.|.. ..++. ++.++|||||.|++++
T Consensus 123 ~~D~v~~~~~dp~~k~~h~krr~~~~~~l~-~~~~~LkpGG~l~~~t 168 (235)
T 3ckk_A 123 QLTKMFFLFPDPHFKRTKHKWRIISPTLLA-EYAYVLRVGGLVYTIT 168 (235)
T ss_dssp CEEEEEEESCC-----------CCCHHHHH-HHHHHEEEEEEEEEEE
T ss_pred CeeEEEEeCCCchhhhhhhhhhhhhHHHHH-HHHHHCCCCCEEEEEe
Confidence 99999998876542 35666 8999999999999987
|
| >1zx0_A Guanidinoacetate N-methyltransferase; structural genomics, structural genomics consortium; HET: SAH; 1.86A {Homo sapiens} PDB: 3orh_A* 1xcj_A* 1xcl_A* 1p1c_A* 1p1b_A* 1khh_A* | Back alignment and structure |
|---|
Probab=99.46 E-value=2.5e-13 Score=118.86 Aligned_cols=133 Identities=23% Similarity=0.265 Sum_probs=88.6
Q ss_pred CCCCCEEEEEecCCCccHHHHHhhhCCCcEEEEEeCChHHHHHHHHHHHcC-CCeEEEEccCCCCcccccCCCcEeEEEE
Q 021911 141 IKPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKR-TNVIPIIEDARHPAKYRMLVGMVDVIFS 219 (305)
Q Consensus 141 ~~~g~~VLDlG~G~G~~t~~la~~~~~~~~V~avD~s~~~~~~l~~~a~~~-~nI~~~~~D~~~~~~~~~~~~~fD~V~~ 219 (305)
+.++.+|||+|||+|.++..+++. ...+|+++|+|+.+++.+.+.++.. .++.+++.|+.+... ....++||+|++
T Consensus 58 ~~~~~~vLDiGcGtG~~~~~l~~~--~~~~v~gvD~s~~~l~~a~~~~~~~~~~v~~~~~d~~~~~~-~~~~~~fD~V~~ 134 (236)
T 1zx0_A 58 SSKGGRVLEVGFGMAIAASKVQEA--PIDEHWIIECNDGVFQRLRDWAPRQTHKVIPLKGLWEDVAP-TLPDGHFDGILY 134 (236)
T ss_dssp TTTCEEEEEECCTTSHHHHHHHTS--CEEEEEEEECCHHHHHHHHHHGGGCSSEEEEEESCHHHHGG-GSCTTCEEEEEE
T ss_pred CCCCCeEEEEeccCCHHHHHHHhc--CCCeEEEEcCCHHHHHHHHHHHHhcCCCeEEEecCHHHhhc-ccCCCceEEEEE
Confidence 567899999999999999999775 2348999999996665555555433 579999999876521 123578999999
Q ss_pred e-CC-------ChhHHHHHHHHHhccCCCCcEEEEEEcccc---cCCC-CchhhhH-HHHHHHHHHCCCcE
Q 021911 220 D-VA-------QPDQARILALNASYFLKAGGHFVISIKANC---IDST-VPAEAVF-QSEVKKLQQDQFKP 277 (305)
Q Consensus 220 d-~~-------~~~~~~~l~~~a~~~LkpGG~lv~s~~~~~---i~~~-~~~~~v~-~~~~~~l~~~Gf~~ 277 (305)
| .+ ..+...++. +++++|||||+|++...... .... ......+ ...+..|+++||+.
T Consensus 135 d~~~~~~~~~~~~~~~~~l~-~~~r~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGF~~ 204 (236)
T 1zx0_A 135 DTYPLSEETWHTHQFNFIKN-HAFRLLKPGGVLTYCNLTSWGELMKSKYSDITIMFEETQVPALLEAGFRR 204 (236)
T ss_dssp CCCCCBGGGTTTHHHHHHHH-THHHHEEEEEEEEECCHHHHHHHTTTTCSCHHHHHHHHTHHHHHHTTCCG
T ss_pred CCcccchhhhhhhhHHHHHH-HHHHhcCCCeEEEEEecCcHHHhhchhhhhhhhhccHHHHHHHHHCCCCC
Confidence 2 21 122334565 89999999999998752110 0011 1111122 22356778999984
|
| >1ri5_A MRNA capping enzyme; methyltransferase, M7G, messenger RNA CAP, structural genomics, PSI, protein structure initiative; 2.10A {Encephalitozoon cuniculi} SCOP: c.66.1.34 PDB: 1ri2_A* 1ri3_A* 1ri1_A* 1ri4_A 1z3c_A* 2hv9_A* | Back alignment and structure |
|---|
Probab=99.45 E-value=7.6e-13 Score=118.93 Aligned_cols=105 Identities=24% Similarity=0.251 Sum_probs=81.9
Q ss_pred CCCCCCEEEEEecCCCccHHHHHhhhCCCcEEEEEeCChHHHHHHHHHHHcC---CCeEEEEccCCCCcccccCCCcEeE
Q 021911 140 WIKPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKR---TNVIPIIEDARHPAKYRMLVGMVDV 216 (305)
Q Consensus 140 ~~~~g~~VLDlG~G~G~~t~~la~~~~~~~~V~avD~s~~~~~~l~~~a~~~---~nI~~~~~D~~~~~~~~~~~~~fD~ 216 (305)
.+.++.+|||+|||+|.++..++.. +..+|+++|+|+.++..+.+.+... .++.+++.|+.+.+.. ...+||+
T Consensus 61 ~~~~~~~vLDiGcG~G~~~~~l~~~--~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~--~~~~fD~ 136 (298)
T 1ri5_A 61 YTKRGDSVLDLGCGKGGDLLKYERA--GIGEYYGVDIAEVSINDARVRARNMKRRFKVFFRAQDSYGRHMD--LGKEFDV 136 (298)
T ss_dssp HCCTTCEEEEETCTTTTTHHHHHHH--TCSEEEEEESCHHHHHHHHHHHHTSCCSSEEEEEESCTTTSCCC--CSSCEEE
T ss_pred hCCCCCeEEEECCCCCHHHHHHHHC--CCCEEEEEECCHHHHHHHHHHHHhcCCCccEEEEECCccccccC--CCCCcCE
Confidence 3578899999999999999998886 4559999999996666555555443 3689999999876421 2568999
Q ss_pred EEEeCCC-------hhHHHHHHHHHhccCCCCcEEEEEEc
Q 021911 217 IFSDVAQ-------PDQARILALNASYFLKAGGHFVISIK 249 (305)
Q Consensus 217 V~~d~~~-------~~~~~~l~~~a~~~LkpGG~lv~s~~ 249 (305)
|+++... ++...++. ++.++|||||+|+++++
T Consensus 137 v~~~~~l~~~~~~~~~~~~~l~-~~~~~LkpgG~l~~~~~ 175 (298)
T 1ri5_A 137 ISSQFSFHYAFSTSESLDIAQR-NIARHLRPGGYFIMTVP 175 (298)
T ss_dssp EEEESCGGGGGSSHHHHHHHHH-HHHHTEEEEEEEEEEEE
T ss_pred EEECchhhhhcCCHHHHHHHHH-HHHHhcCCCCEEEEEEC
Confidence 9997552 34556666 99999999999999874
|
| >3d2l_A SAM-dependent methyltransferase; ZP_00538691.1, structural G joint center for structural genomics, JCSG; HET: MSE; 1.90A {Exiguobacterium sibiricum 255-15} | Back alignment and structure |
|---|
Probab=99.45 E-value=1.6e-12 Score=113.38 Aligned_cols=99 Identities=23% Similarity=0.301 Sum_probs=77.4
Q ss_pred CCCCCEEEEEecCCCccHHHHHhhhCCCcEEEEEeCChHHHHHHHHHHHcC-CCeEEEEccCCCCcccccCCCcEeEEEE
Q 021911 141 IKPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKR-TNVIPIIEDARHPAKYRMLVGMVDVIFS 219 (305)
Q Consensus 141 ~~~g~~VLDlG~G~G~~t~~la~~~~~~~~V~avD~s~~~~~~l~~~a~~~-~nI~~~~~D~~~~~~~~~~~~~fD~V~~ 219 (305)
+.++.+|||+|||+|.++..+++. .+|+++|+|+.+++.+.+.+... .++.+++.|+...+ ...+||+|++
T Consensus 31 ~~~~~~vLdiG~G~G~~~~~l~~~----~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~d~~~~~----~~~~fD~v~~ 102 (243)
T 3d2l_A 31 VEPGKRIADIGCGTGTATLLLADH----YEVTGVDLSEEMLEIAQEKAMETNRHVDFWVQDMRELE----LPEPVDAITI 102 (243)
T ss_dssp SCTTCEEEEESCTTCHHHHHHTTT----SEEEEEESCHHHHHHHHHHHHHTTCCCEEEECCGGGCC----CSSCEEEEEE
T ss_pred cCCCCeEEEecCCCCHHHHHHhhC----CeEEEEECCHHHHHHHHHhhhhcCCceEEEEcChhhcC----CCCCcCEEEE
Confidence 456799999999999999998876 48999999996666555554433 57999999987653 2368999998
Q ss_pred eC-C-----C-hhHHHHHHHHHhccCCCCcEEEEEE
Q 021911 220 DV-A-----Q-PDQARILALNASYFLKAGGHFVISI 248 (305)
Q Consensus 220 d~-~-----~-~~~~~~l~~~a~~~LkpGG~lv~s~ 248 (305)
.. + . .+...++. ++.++|||||+|++++
T Consensus 103 ~~~~~~~~~~~~~~~~~l~-~~~~~L~pgG~l~~~~ 137 (243)
T 3d2l_A 103 LCDSLNYLQTEADVKQTFD-SAARLLTDGGKLLFDV 137 (243)
T ss_dssp CTTGGGGCCSHHHHHHHHH-HHHHHEEEEEEEEEEE
T ss_pred eCCchhhcCCHHHHHHHHH-HHHHhcCCCeEEEEEc
Confidence 64 2 1 34555665 9999999999999965
|
| >2pxx_A Uncharacterized protein MGC2408; structural genomics consortium, SGC, methyltransferase, LOC84291, transferase; HET: SAH; 1.30A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.45 E-value=1.4e-12 Score=111.32 Aligned_cols=102 Identities=19% Similarity=0.205 Sum_probs=80.4
Q ss_pred CCCCCEEEEEecCCCccHHHHHhhhCCCcEEEEEeCChHHHHHHHHHHHcCCCeEEEEccCCCCcccccCCCcEeEEEEe
Q 021911 141 IKPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKRTNVIPIIEDARHPAKYRMLVGMVDVIFSD 220 (305)
Q Consensus 141 ~~~g~~VLDlG~G~G~~t~~la~~~~~~~~V~avD~s~~~~~~l~~~a~~~~nI~~~~~D~~~~~~~~~~~~~fD~V~~d 220 (305)
+.++.+|||+|||+|.++..+++. +. .+|+++|+|+.++..+.+.+...+++.+++.|+.+.+ ....+||+|+++
T Consensus 40 ~~~~~~vLdiGcG~G~~~~~l~~~-~~-~~v~~~D~s~~~~~~a~~~~~~~~~i~~~~~d~~~~~---~~~~~fD~v~~~ 114 (215)
T 2pxx_A 40 LRPEDRILVLGCGNSALSYELFLG-GF-PNVTSVDYSSVVVAAMQACYAHVPQLRWETMDVRKLD---FPSASFDVVLEK 114 (215)
T ss_dssp CCTTCCEEEETCTTCSHHHHHHHT-TC-CCEEEEESCHHHHHHHHHHTTTCTTCEEEECCTTSCC---SCSSCEEEEEEE
T ss_pred cCCCCeEEEECCCCcHHHHHHHHc-CC-CcEEEEeCCHHHHHHHHHhcccCCCcEEEEcchhcCC---CCCCcccEEEEC
Confidence 467899999999999999999987 23 3899999999666555555544468999999998763 234689999987
Q ss_pred CCC------------------hhHHHHHHHHHhccCCCCcEEEEEE
Q 021911 221 VAQ------------------PDQARILALNASYFLKAGGHFVISI 248 (305)
Q Consensus 221 ~~~------------------~~~~~~l~~~a~~~LkpGG~lv~s~ 248 (305)
.+. .+...++. ++.++|||||+|++.+
T Consensus 115 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~~~~LkpgG~li~~~ 159 (215)
T 2pxx_A 115 GTLDALLAGERDPWTVSSEGVHTVDQVLS-EVSRVLVPGGRFISMT 159 (215)
T ss_dssp SHHHHHTTTCSCTTSCCHHHHHHHHHHHH-HHHHHEEEEEEEEEEE
T ss_pred cchhhhccccccccccccchhHHHHHHHH-HHHHhCcCCCEEEEEe
Confidence 651 13456666 9999999999999998
|
| >3bwc_A Spermidine synthase; SAM, SGPP, structura genomics, PSI, protein structure initiative, structural GEN pathogenic protozoa consortium; HET: MSE SAM; 2.30A {Trypanosoma cruzi} PDB: 3bwb_A* | Back alignment and structure |
|---|
Probab=99.45 E-value=4.4e-12 Score=115.69 Aligned_cols=149 Identities=12% Similarity=0.086 Sum_probs=102.5
Q ss_pred CCCCEEEEEecCCCccHHHHHhhhCCCcEEEEEeCChHHHHHHHHHHH------cCCCeEEEEccCCCCcccccCCCcEe
Q 021911 142 KPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAK------KRTNVIPIIEDARHPAKYRMLVGMVD 215 (305)
Q Consensus 142 ~~g~~VLDlG~G~G~~t~~la~~~~~~~~V~avD~s~~~~~~l~~~a~------~~~nI~~~~~D~~~~~~~~~~~~~fD 215 (305)
.+..+|||||||+|.++..+++.. +..+|++||+|+..++.+.+.+. ..+++.+++.|+...... ....+||
T Consensus 94 ~~~~~VLdiG~G~G~~~~~l~~~~-~~~~v~~vDid~~~i~~a~~~~~~~~~~~~~~~v~~~~~D~~~~~~~-~~~~~fD 171 (304)
T 3bwc_A 94 PKPERVLIIGGGDGGVLREVLRHG-TVEHCDLVDIDGEVMEQSKQHFPQISRSLADPRATVRVGDGLAFVRQ-TPDNTYD 171 (304)
T ss_dssp SSCCEEEEEECTTSHHHHHHHTCT-TCCEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHHHHS-SCTTCEE
T ss_pred CCCCeEEEEcCCCCHHHHHHHhCC-CCCEEEEEECCHHHHHHHHHHhHHhhcccCCCcEEEEECcHHHHHHh-ccCCcee
Confidence 456899999999999999999863 45699999999966555554432 126899999998765321 0246899
Q ss_pred EEEEeCCChhH-------HHHHHHHHhccCCCCcEEEEEEcccccCCCCchhhhHHHHHHHHHHCCCcEeEEee--cCCC
Q 021911 216 VIFSDVAQPDQ-------ARILALNASYFLKAGGHFVISIKANCIDSTVPAEAVFQSEVKKLQQDQFKPFEQVT--LEPF 286 (305)
Q Consensus 216 ~V~~d~~~~~~-------~~~l~~~a~~~LkpGG~lv~s~~~~~i~~~~~~~~v~~~~~~~l~~~Gf~~~e~~~--l~p~ 286 (305)
+|++|.+.+.. .+++. ++.++|||||.|++... +... ....+....+.|++.||..++... +..|
T Consensus 172 vIi~d~~~~~~~~~~l~~~~~l~-~~~~~LkpgG~lv~~~~--~~~~---~~~~~~~~~~~l~~~GF~~v~~~~~~vP~y 245 (304)
T 3bwc_A 172 VVIIDTTDPAGPASKLFGEAFYK-DVLRILKPDGICCNQGE--SIWL---DLELIEKMSRFIRETGFASVQYALMHVPTY 245 (304)
T ss_dssp EEEEECC---------CCHHHHH-HHHHHEEEEEEEEEEEC--CTTT---CHHHHHHHHHHHHHHTCSEEEEEECCCTTS
T ss_pred EEEECCCCccccchhhhHHHHHH-HHHHhcCCCcEEEEecC--Cccc---chHHHHHHHHHHHhCCCCcEEEEEeecccc
Confidence 99999874431 45666 99999999999999862 2111 112334446777888998776553 3444
Q ss_pred -CCceEEEEEEEc
Q 021911 287 -ERDHACVVGGYR 298 (305)
Q Consensus 287 -~~~~~~vv~~~~ 298 (305)
...+.++++.+.
T Consensus 246 p~g~w~f~~as~~ 258 (304)
T 3bwc_A 246 PCGSIGTLVCSKK 258 (304)
T ss_dssp TTSCCEEEEEESS
T ss_pred cCcceEEEEEeCC
Confidence 345566777764
|
| >3p2e_A 16S rRNA methylase; methyltransferase, transferase, NPMA; HET: SAH; 1.68A {Escherichia coli} PDB: 3p2i_A 3p2k_A* 3pb3_A* 3mte_A* | Back alignment and structure |
|---|
Probab=99.45 E-value=4.3e-13 Score=117.20 Aligned_cols=137 Identities=18% Similarity=0.176 Sum_probs=92.8
Q ss_pred CCCCCEEEEEecCCCccHHHHHhhhCCCcEEEEEeCChHHHHHHHHHH---HcC------CCeEEEEccCCCCcccccCC
Q 021911 141 IKPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMA---KKR------TNVIPIIEDARHPAKYRMLV 211 (305)
Q Consensus 141 ~~~g~~VLDlG~G~G~~t~~la~~~~~~~~V~avD~s~~~~~~l~~~a---~~~------~nI~~~~~D~~~~~~~~~~~ 211 (305)
.+++.+|||||||+|.++..+|... +..+|++||+|+. .|++.| +++ +||.+++.|+...+.. ..
T Consensus 22 ~~~~~~vLDiGCG~G~~~~~la~~~-~~~~v~GvD~s~~---~ml~~A~~A~~~~~~~~~~~v~~~~~d~~~l~~~--~~ 95 (225)
T 3p2e_A 22 GQFDRVHIDLGTGDGRNIYKLAIND-QNTFYIGIDPVKE---NLFDISKKIIKKPSKGGLSNVVFVIAAAESLPFE--LK 95 (225)
T ss_dssp TTCSEEEEEETCTTSHHHHHHHHTC-TTEEEEEECSCCG---GGHHHHHHHTSCGGGTCCSSEEEECCBTTBCCGG--GT
T ss_pred CCCCCEEEEEeccCcHHHHHHHHhC-CCCEEEEEeCCHH---HHHHHHHHHHHHHHHcCCCCeEEEEcCHHHhhhh--cc
Confidence 4678999999999999999999753 5678999999943 343333 322 5899999999887432 23
Q ss_pred CcEeEEEEeCCChhH--------HHHHHHHHhccCCCCcEEEEEEccccc-CC--------CCchhhhHHH--HHHHHHH
Q 021911 212 GMVDVIFSDVAQPDQ--------ARILALNASYFLKAGGHFVISIKANCI-DS--------TVPAEAVFQS--EVKKLQQ 272 (305)
Q Consensus 212 ~~fD~V~~d~~~~~~--------~~~l~~~a~~~LkpGG~lv~s~~~~~i-~~--------~~~~~~v~~~--~~~~l~~ 272 (305)
+.||.|+++++.+.. ..++. +++++|||||+|++++..... .. .......+.. ....+++
T Consensus 96 d~v~~i~~~~~~~~~~~~~~~~~~~~l~-~~~r~LkpGG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~el~~~l~~ 174 (225)
T 3p2e_A 96 NIADSISILFPWGTLLEYVIKPNRDILS-NVADLAKKEAHFEFVTTYSDSYEEAEIKKRGLPLLSKAYFLSEQYKAELSN 174 (225)
T ss_dssp TCEEEEEEESCCHHHHHHHHTTCHHHHH-HHHTTEEEEEEEEEEECCCC--------------CCHHHHHSHHHHHHHHH
T ss_pred CeEEEEEEeCCCcHHhhhhhcchHHHHH-HHHHhcCCCcEEEEEEeccccchhchhhhcCCCCCChhhcchHHHHHHHHH
Confidence 789999999886542 34566 899999999999994411110 00 0000111122 2455678
Q ss_pred CCCcEeEEeecC
Q 021911 273 DQFKPFEQVTLE 284 (305)
Q Consensus 273 ~Gf~~~e~~~l~ 284 (305)
+||++.+...+.
T Consensus 175 aGf~v~~~~~~~ 186 (225)
T 3p2e_A 175 SGFRIDDVKELD 186 (225)
T ss_dssp HTCEEEEEEEEC
T ss_pred cCCCeeeeeecC
Confidence 899988876554
|
| >2yxd_A Probable cobalt-precorrin-6Y C(15)-methyltransfer [decarboxylating]; alpha and beta protein (A/B) class; HET: MES; 2.30A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=99.44 E-value=1.8e-12 Score=107.70 Aligned_cols=132 Identities=13% Similarity=0.082 Sum_probs=96.9
Q ss_pred hHHHHHHHccccccCCCCCCEEEEEecCCCccHHHHHhhhCCCcEEEEEeCChHHHHHHHHHHHcC--CCeEEEEccCCC
Q 021911 126 SKLAAAVLGGVDNIWIKPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKR--TNVIPIIEDARH 203 (305)
Q Consensus 126 s~l~a~ll~~l~~~~~~~g~~VLDlG~G~G~~t~~la~~~~~~~~V~avD~s~~~~~~l~~~a~~~--~nI~~~~~D~~~ 203 (305)
..+...++..+ .+.++.+|||+|||+|.++..++. +..+|+++|+|+.+++.+.+.++.. +++.+++.|+.+
T Consensus 21 ~~~~~~~~~~~---~~~~~~~vLdiG~G~G~~~~~l~~---~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~d~~~ 94 (183)
T 2yxd_A 21 EEIRAVSIGKL---NLNKDDVVVDVGCGSGGMTVEIAK---RCKFVYAIDYLDGAIEVTKQNLAKFNIKNCQIIKGRAED 94 (183)
T ss_dssp HHHHHHHHHHH---CCCTTCEEEEESCCCSHHHHHHHT---TSSEEEEEECSHHHHHHHHHHHHHTTCCSEEEEESCHHH
T ss_pred HHHHHHHHHHc---CCCCCCEEEEeCCCCCHHHHHHHh---cCCeEEEEeCCHHHHHHHHHHHHHcCCCcEEEEECCccc
Confidence 34444554333 467789999999999999999998 3569999999997666666655544 579999999876
Q ss_pred CcccccCCCcEeEEEEeCCChhHHHHHHHHHhccCCCCcEEEEEEcccccCCCCchhhhHHHHHHHHHHCCCcEeEE
Q 021911 204 PAKYRMLVGMVDVIFSDVAQPDQARILALNASYFLKAGGHFVISIKANCIDSTVPAEAVFQSEVKKLQQDQFKPFEQ 280 (305)
Q Consensus 204 ~~~~~~~~~~fD~V~~d~~~~~~~~~l~~~a~~~LkpGG~lv~s~~~~~i~~~~~~~~v~~~~~~~l~~~Gf~~~e~ 280 (305)
.. ...+||+|+++.+ .+...++. ++.++ |+|.|++++. . ...+....+.+++.||.+...
T Consensus 95 ~~----~~~~~D~i~~~~~-~~~~~~l~-~~~~~--~gG~l~~~~~--~-------~~~~~~~~~~l~~~g~~~~~~ 154 (183)
T 2yxd_A 95 VL----DKLEFNKAFIGGT-KNIEKIIE-ILDKK--KINHIVANTI--V-------LENAAKIINEFESRGYNVDAV 154 (183)
T ss_dssp HG----GGCCCSEEEECSC-SCHHHHHH-HHHHT--TCCEEEEEES--C-------HHHHHHHHHHHHHTTCEEEEE
T ss_pred cc----cCCCCcEEEECCc-ccHHHHHH-HHhhC--CCCEEEEEec--c-------cccHHHHHHHHHHcCCeEEEE
Confidence 32 1368999999988 66677776 77777 9999999872 1 122344567778889876543
|
| >2gpy_A O-methyltransferase; structural genomics, PSI, protein structure initiative, NEW research center for structural genomics, nysgxrc; HET: MSE; 1.90A {Bacillus halodurans} | Back alignment and structure |
|---|
Probab=99.44 E-value=3.4e-13 Score=117.68 Aligned_cols=107 Identities=21% Similarity=0.291 Sum_probs=86.2
Q ss_pred CCCCCCEEEEEecCCCccHHHHHhhhCCCcEEEEEeCChHHHHHHHHHHHcC---CCeEEEEccCCCCcccccCCCcEeE
Q 021911 140 WIKPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKR---TNVIPIIEDARHPAKYRMLVGMVDV 216 (305)
Q Consensus 140 ~~~~g~~VLDlG~G~G~~t~~la~~~~~~~~V~avD~s~~~~~~l~~~a~~~---~nI~~~~~D~~~~~~~~~~~~~fD~ 216 (305)
.+.++.+|||+|||+|.++..+++.+ +..+|+++|+|+..++.+.+.++.. .+|.+++.|+....+......+||+
T Consensus 51 ~~~~~~~vLdiG~G~G~~~~~la~~~-~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~fD~ 129 (233)
T 2gpy_A 51 KMAAPARILEIGTAIGYSAIRMAQAL-PEATIVSIERDERRYEEAHKHVKALGLESRIELLFGDALQLGEKLELYPLFDV 129 (233)
T ss_dssp HHHCCSEEEEECCTTSHHHHHHHHHC-TTCEEEEECCCHHHHHHHHHHHHHTTCTTTEEEECSCGGGSHHHHTTSCCEEE
T ss_pred hccCCCEEEEecCCCcHHHHHHHHHC-CCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECCHHHHHHhcccCCCccE
Confidence 35577899999999999999999986 4679999999996666655555443 4699999998775322111368999
Q ss_pred EEEeCCChhHHHHHHHHHhccCCCCcEEEEEE
Q 021911 217 IFSDVAQPDQARILALNASYFLKAGGHFVISI 248 (305)
Q Consensus 217 V~~d~~~~~~~~~l~~~a~~~LkpGG~lv~s~ 248 (305)
|+++.+.+++..++. ++.++|||||.|++.+
T Consensus 130 I~~~~~~~~~~~~l~-~~~~~L~pgG~lv~~~ 160 (233)
T 2gpy_A 130 LFIDAAKGQYRRFFD-MYSPMVRPGGLILSDN 160 (233)
T ss_dssp EEEEGGGSCHHHHHH-HHGGGEEEEEEEEEET
T ss_pred EEECCCHHHHHHHHH-HHHHHcCCCeEEEEEc
Confidence 999999888888887 9999999999999974
|
| >2igt_A SAM dependent methyltransferase; alpha-beta sandwich, beta-barrel, structural genomics, PSI-2 structure initiative; HET: MSE SAM GOL; 1.89A {Agrobacterium tumefaciens str} SCOP: c.66.1.51 | Back alignment and structure |
|---|
Probab=99.44 E-value=8.2e-13 Score=122.07 Aligned_cols=149 Identities=11% Similarity=-0.034 Sum_probs=98.8
Q ss_pred CCCCEEEEEecCCCccHHHHHhhhCCCcEEEEEeCChHHHHHHHHHHHcC--C--CeEEEEccCCCCcccc-cCCCcEeE
Q 021911 142 KPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKR--T--NVIPIIEDARHPAKYR-MLVGMVDV 216 (305)
Q Consensus 142 ~~g~~VLDlG~G~G~~t~~la~~~~~~~~V~avD~s~~~~~~l~~~a~~~--~--nI~~~~~D~~~~~~~~-~~~~~fD~ 216 (305)
.++.+|||+|||+|.++..++.. .. +|++||+|+.+++.+.++++.. . ++.+++.|+.+..... ....+||+
T Consensus 152 ~~~~~VLDlgcGtG~~sl~la~~--ga-~V~~VD~s~~al~~a~~n~~~~gl~~~~v~~i~~D~~~~l~~~~~~~~~fD~ 228 (332)
T 2igt_A 152 DRPLKVLNLFGYTGVASLVAAAA--GA-EVTHVDASKKAIGWAKENQVLAGLEQAPIRWICEDAMKFIQREERRGSTYDI 228 (332)
T ss_dssp SSCCEEEEETCTTCHHHHHHHHT--TC-EEEEECSCHHHHHHHHHHHHHHTCTTSCEEEECSCHHHHHHHHHHHTCCBSE
T ss_pred CCCCcEEEcccccCHHHHHHHHc--CC-EEEEEECCHHHHHHHHHHHHHcCCCccceEEEECcHHHHHHHHHhcCCCceE
Confidence 46789999999999999999986 23 9999999997776666665543 2 4999999987654210 01358999
Q ss_pred EEEeCCC-------------hhHHHHHHHHHhccCCCCcEEEEEEcccccCCCCchhhhHHHHHH-HHHHCCCcEeEEe-
Q 021911 217 IFSDVAQ-------------PDQARILALNASYFLKAGGHFVISIKANCIDSTVPAEAVFQSEVK-KLQQDQFKPFEQV- 281 (305)
Q Consensus 217 V~~d~~~-------------~~~~~~l~~~a~~~LkpGG~lv~s~~~~~i~~~~~~~~v~~~~~~-~l~~~Gf~~~e~~- 281 (305)
|++|+|. .+..+++. ++.++|||||.|+++. .|... . ....|.+.+. .+++.|+++....
T Consensus 229 Ii~dPP~~~~~~~~~~~~~~~~~~~ll~-~~~~~LkpgG~lli~~--~~~~~-~-~~~~~~~~l~~a~~~~g~~v~~~e~ 303 (332)
T 2igt_A 229 ILTDPPKFGRGTHGEVWQLFDHLPLMLD-ICREILSPKALGLVLT--AYSIR-A-SFYSMHELMRETMRGAGGVVASGEL 303 (332)
T ss_dssp EEECCCSEEECTTCCEEEHHHHHHHHHH-HHHHTBCTTCCEEEEE--ECCTT-S-CHHHHHHHHHHHTTTSCSEEEEEEE
T ss_pred EEECCccccCCchHHHHHHHHHHHHHHH-HHHHhcCcCcEEEEEE--CCCCC-C-CHHHHHHHHHHHHHHcCCeEEEEEE
Confidence 9999983 12456666 8999999999988765 23211 1 2233444443 3456788765322
Q ss_pred ecCCCC-----CceEEEEEEEc
Q 021911 282 TLEPFE-----RDHACVVGGYR 298 (305)
Q Consensus 282 ~l~p~~-----~~~~~vv~~~~ 298 (305)
.+.... ....+..+.|.
T Consensus 304 ~~p~~~~~q~~~~r~lp~g~~~ 325 (332)
T 2igt_A 304 VIREAGLDGKTPGRVLSTSLFS 325 (332)
T ss_dssp EEECCCSSSCCCCCEEEEEEEE
T ss_pred ecccCCcccccCCceeeeEEEE
Confidence 222222 35555555554
|
| >3kr9_A SAM-dependent methyltransferase; class I rossmann-like methyltransferase fold; 2.00A {Streptococcus pneumoniae} PDB: 3ku1_A* | Back alignment and structure |
|---|
Probab=99.44 E-value=2.2e-12 Score=112.57 Aligned_cols=142 Identities=15% Similarity=0.079 Sum_probs=104.5
Q ss_pred CCCCCCEEEEEecCCCccHHHHHhhhCCCcEEEEEeCChHHHHHHHHHHHcC---CCeEEEEccCCCCcccccCCCcEeE
Q 021911 140 WIKPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKR---TNVIPIIEDARHPAKYRMLVGMVDV 216 (305)
Q Consensus 140 ~~~~g~~VLDlG~G~G~~t~~la~~~~~~~~V~avD~s~~~~~~l~~~a~~~---~nI~~~~~D~~~~~~~~~~~~~fD~ 216 (305)
.++++.+|||+|||+|..+..+|.. ++..+|+|+|+++.++..+.++++.. .+|++++.|..+..+. ...||+
T Consensus 12 ~v~~g~~VlDIGtGsG~l~i~la~~-~~~~~V~avDi~~~al~~A~~N~~~~gl~~~i~~~~~d~l~~l~~---~~~~D~ 87 (225)
T 3kr9_A 12 FVSQGAILLDVGSDHAYLPIELVER-GQIKSAIAGEVVEGPYQSAVKNVEAHGLKEKIQVRLANGLAAFEE---TDQVSV 87 (225)
T ss_dssp TSCTTEEEEEETCSTTHHHHHHHHT-TSEEEEEEEESSHHHHHHHHHHHHHTTCTTTEEEEECSGGGGCCG---GGCCCE
T ss_pred hCCCCCEEEEeCCCcHHHHHHHHHh-CCCCEEEEEECCHHHHHHHHHHHHHcCCCceEEEEECchhhhccc---CcCCCE
Confidence 4678899999999999999999987 45678999999998777777777665 3699999998654321 126998
Q ss_pred EEE-eCCChhHHHHHHHHHhccCCCCcEEEEEEcccccCCCCchhhhHHHHHHHHHHCCCcEeEEeecCCCCCceEEEEE
Q 021911 217 IFS-DVAQPDQARILALNASYFLKAGGHFVISIKANCIDSTVPAEAVFQSEVKKLQQDQFKPFEQVTLEPFERDHACVVG 295 (305)
Q Consensus 217 V~~-d~~~~~~~~~l~~~a~~~LkpGG~lv~s~~~~~i~~~~~~~~v~~~~~~~l~~~Gf~~~e~~~l~p~~~~~~~vv~ 295 (305)
|++ .+.-..-.+++. .+...|+++++|+++.. ... ....++|.++||.+.+..-+..-.+-|-++++
T Consensus 88 IviaG~Gg~~i~~Il~-~~~~~L~~~~~lVlq~~-------~~~----~~vr~~L~~~Gf~i~~e~lv~e~~~~Yeii~~ 155 (225)
T 3kr9_A 88 ITIAGMGGRLIARILE-EGLGKLANVERLILQPN-------NRE----DDLRIWLQDHGFQIVAESILEEAGKFYEILVV 155 (225)
T ss_dssp EEEEEECHHHHHHHHH-HTGGGCTTCCEEEEEES-------SCH----HHHHHHHHHTTEEEEEEEEEEETTEEEEEEEE
T ss_pred EEEcCCChHHHHHHHH-HHHHHhCCCCEEEEECC-------CCH----HHHHHHHHHCCCEEEEEEEEEECCEEEEEEEE
Confidence 875 444444677777 89999999999999861 112 22257888999999876555444444556666
Q ss_pred EE
Q 021911 296 GY 297 (305)
Q Consensus 296 ~~ 297 (305)
.+
T Consensus 156 ~~ 157 (225)
T 3kr9_A 156 EA 157 (225)
T ss_dssp EE
T ss_pred Ee
Confidence 54
|
| >3dr5_A Putative O-methyltransferase; Q8NRD3, CGL1119, PF01596, CGR117, NESG, structural genomics, PSI-2, protein structure initiative; 2.25A {Corynebacterium glutamicum} | Back alignment and structure |
|---|
Probab=99.44 E-value=2e-13 Score=119.01 Aligned_cols=105 Identities=12% Similarity=0.173 Sum_probs=85.3
Q ss_pred CCCCEEEEEecCCCccHHHHHhhhCCCcEEEEEeCChHHHHHHHHHHHcC----CCeEEEEccCCCCcccccCCCcEeEE
Q 021911 142 KPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKR----TNVIPIIEDARHPAKYRMLVGMVDVI 217 (305)
Q Consensus 142 ~~g~~VLDlG~G~G~~t~~la~~~~~~~~V~avD~s~~~~~~l~~~a~~~----~nI~~~~~D~~~~~~~~~~~~~fD~V 217 (305)
++..+|||+|||+|..+..+|+.+.+.++|++||+|+.+++.+.+.+++. ++|.+++.|+.+..+. ....+||+|
T Consensus 55 ~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~~i~~~~gda~~~l~~-~~~~~fD~V 133 (221)
T 3dr5_A 55 NGSTGAIAITPAAGLVGLYILNGLADNTTLTCIDPESEHQRQAKALFREAGYSPSRVRFLLSRPLDVMSR-LANDSYQLV 133 (221)
T ss_dssp TTCCEEEEESTTHHHHHHHHHHHSCTTSEEEEECSCHHHHHHHHHHHHHTTCCGGGEEEECSCHHHHGGG-SCTTCEEEE
T ss_pred CCCCCEEEEcCCchHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCcCcEEEEEcCHHHHHHH-hcCCCcCeE
Confidence 34569999999999999999998866789999999997766666555542 3799999998665322 124799999
Q ss_pred EEeCCChhHHHHHHHHHhccCCCCcEEEEEE
Q 021911 218 FSDVAQPDQARILALNASYFLKAGGHFVISI 248 (305)
Q Consensus 218 ~~d~~~~~~~~~l~~~a~~~LkpGG~lv~s~ 248 (305)
|+|....+....+. .+.++|||||.|++..
T Consensus 134 ~~d~~~~~~~~~l~-~~~~~LkpGG~lv~dn 163 (221)
T 3dr5_A 134 FGQVSPMDLKALVD-AAWPLLRRGGALVLAD 163 (221)
T ss_dssp EECCCTTTHHHHHH-HHHHHEEEEEEEEETT
T ss_pred EEcCcHHHHHHHHH-HHHHHcCCCcEEEEeC
Confidence 99998888777887 9999999999999854
|
| >2fhp_A Methylase, putative; alpha-beta-alpha sandwich, structural genomics, PSI, protein structure initiative; HET: MSE; 1.60A {Enterococcus faecalis} SCOP: c.66.1.46 | Back alignment and structure |
|---|
Probab=99.44 E-value=1.8e-13 Score=114.72 Aligned_cols=123 Identities=12% Similarity=0.016 Sum_probs=88.1
Q ss_pred cCchhhHHHHHHHccccccCCCCCCEEEEEecCCCccHHHHHhhhCCCcEEEEEeCChHHHHHHHHHHHcC---CCeEEE
Q 021911 121 WNPFRSKLAAAVLGGVDNIWIKPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKR---TNVIPI 197 (305)
Q Consensus 121 ~~~~~s~l~a~ll~~l~~~~~~~g~~VLDlG~G~G~~t~~la~~~~~~~~V~avD~s~~~~~~l~~~a~~~---~nI~~~ 197 (305)
..|....+...++..+. ...++.+|||+|||+|.++..++.. +..+|+++|+|+.+++.+.+.++.. ++++++
T Consensus 24 ~rp~~~~~~~~~~~~l~--~~~~~~~vLD~GcG~G~~~~~~~~~--~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~ 99 (187)
T 2fhp_A 24 TRPTTDKVKESIFNMIG--PYFDGGMALDLYSGSGGLAIEAVSR--GMDKSICIEKNFAALKVIKENIAITKEPEKFEVR 99 (187)
T ss_dssp SCCCCHHHHHHHHHHHC--SCCSSCEEEETTCTTCHHHHHHHHT--TCSEEEEEESCHHHHHHHHHHHHHHTCGGGEEEE
T ss_pred cCcCHHHHHHHHHHHHH--hhcCCCCEEEeCCccCHHHHHHHHc--CCCEEEEEECCHHHHHHHHHHHHHhCCCcceEEE
Confidence 44555666666665443 2356789999999999999998885 4569999999996666655555433 479999
Q ss_pred EccCCCCccc-ccCCCcEeEEEEeCCC--hhHHHHHHHHH--hccCCCCcEEEEEE
Q 021911 198 IEDARHPAKY-RMLVGMVDVIFSDVAQ--PDQARILALNA--SYFLKAGGHFVISI 248 (305)
Q Consensus 198 ~~D~~~~~~~-~~~~~~fD~V~~d~~~--~~~~~~l~~~a--~~~LkpGG~lv~s~ 248 (305)
+.|+.+.... .....+||+|+++++. .+....+. .+ .++|||||.|++++
T Consensus 100 ~~d~~~~~~~~~~~~~~fD~i~~~~~~~~~~~~~~~~-~l~~~~~L~~gG~l~~~~ 154 (187)
T 2fhp_A 100 KMDANRALEQFYEEKLQFDLVLLDPPYAKQEIVSQLE-KMLERQLLTNEAVIVCET 154 (187)
T ss_dssp ESCHHHHHHHHHHTTCCEEEEEECCCGGGCCHHHHHH-HHHHTTCEEEEEEEEEEE
T ss_pred ECcHHHHHHHHHhcCCCCCEEEECCCCCchhHHHHHH-HHHHhcccCCCCEEEEEe
Confidence 9998764321 1114689999999882 23334443 44 88999999999987
|
| >1wzn_A SAM-dependent methyltransferase; structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: SAH; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.43 | Back alignment and structure |
|---|
Probab=99.44 E-value=1.9e-12 Score=113.82 Aligned_cols=101 Identities=19% Similarity=0.186 Sum_probs=78.6
Q ss_pred CCCCCCEEEEEecCCCccHHHHHhhhCCCcEEEEEeCChHHHHHHHHHHHcC-CCeEEEEccCCCCcccccCCCcEeEEE
Q 021911 140 WIKPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKR-TNVIPIIEDARHPAKYRMLVGMVDVIF 218 (305)
Q Consensus 140 ~~~~g~~VLDlG~G~G~~t~~la~~~~~~~~V~avD~s~~~~~~l~~~a~~~-~nI~~~~~D~~~~~~~~~~~~~fD~V~ 218 (305)
...++.+|||+|||+|.++..+++. ..+|+++|+|+.++..+.+.+... .++.+++.|+.+.+. ..+||+|+
T Consensus 38 ~~~~~~~vLDlGcG~G~~~~~l~~~---~~~v~gvD~s~~~l~~a~~~~~~~~~~v~~~~~d~~~~~~----~~~fD~v~ 110 (252)
T 1wzn_A 38 AKREVRRVLDLACGTGIPTLELAER---GYEVVGLDLHEEMLRVARRKAKERNLKIEFLQGDVLEIAF----KNEFDAVT 110 (252)
T ss_dssp CSSCCCEEEEETCTTCHHHHHHHHT---TCEEEEEESCHHHHHHHHHHHHHTTCCCEEEESCGGGCCC----CSCEEEEE
T ss_pred cccCCCEEEEeCCCCCHHHHHHHHC---CCeEEEEECCHHHHHHHHHHHHhcCCceEEEECChhhccc----CCCccEEE
Confidence 4567789999999999999999986 358999999996666655555443 479999999977542 36899999
Q ss_pred EeCC-----C-hhHHHHHHHHHhccCCCCcEEEEEE
Q 021911 219 SDVA-----Q-PDQARILALNASYFLKAGGHFVISI 248 (305)
Q Consensus 219 ~d~~-----~-~~~~~~l~~~a~~~LkpGG~lv~s~ 248 (305)
+... . .+...++. ++.++|||||.|++.+
T Consensus 111 ~~~~~~~~~~~~~~~~~l~-~~~~~L~pgG~li~~~ 145 (252)
T 1wzn_A 111 MFFSTIMYFDEEDLRKLFS-KVAEALKPGGVFITDF 145 (252)
T ss_dssp ECSSGGGGSCHHHHHHHHH-HHHHHEEEEEEEEEEE
T ss_pred EcCCchhcCCHHHHHHHHH-HHHHHcCCCeEEEEec
Confidence 8533 1 34556666 9999999999999865
|
| >2ift_A Putative methylase HI0767; NESG, Y767_haein, structural genomics, PSI-2, protein structure initiative; 2.30A {Haemophilus influenzae} SCOP: c.66.1.46 | Back alignment and structure |
|---|
Probab=99.44 E-value=1.6e-13 Score=117.51 Aligned_cols=120 Identities=13% Similarity=0.037 Sum_probs=83.4
Q ss_pred chhhHHHHHHHccccccCCCCCCEEEEEecCCCccHHHHHhhhCCCcEEEEEeCChHHHHHHHHHHHcC----CCeEEEE
Q 021911 123 PFRSKLAAAVLGGVDNIWIKPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKR----TNVIPII 198 (305)
Q Consensus 123 ~~~s~l~a~ll~~l~~~~~~~g~~VLDlG~G~G~~t~~la~~~~~~~~V~avD~s~~~~~~l~~~a~~~----~nI~~~~ 198 (305)
|....+...++..+.. ..++.+|||+|||+|.++..++.. ...+|++||+|+.+++.+.+.++.. +++.+++
T Consensus 35 p~~~~~~~~l~~~l~~--~~~~~~vLDlGcGtG~~~~~~~~~--~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~ 110 (201)
T 2ift_A 35 PTGDRVKETLFNWLMP--YIHQSECLDGFAGSGSLGFEALSR--QAKKVTFLELDKTVANQLKKNLQTLKCSSEQAEVIN 110 (201)
T ss_dssp ---CHHHHHHHHHHHH--HHTTCEEEETTCTTCHHHHHHHHT--TCSEEEEECSCHHHHHHHHHHHHHTTCCTTTEEEEC
T ss_pred cCHHHHHHHHHHHHHH--hcCCCeEEEcCCccCHHHHHHHHc--cCCEEEEEECCHHHHHHHHHHHHHhCCCccceEEEE
Confidence 3344444444443321 126789999999999999987766 2358999999997766666655543 4799999
Q ss_pred ccCCCCcccccCCCc-EeEEEEeCC--ChhHHHHHHHHH--hccCCCCcEEEEEE
Q 021911 199 EDARHPAKYRMLVGM-VDVIFSDVA--QPDQARILALNA--SYFLKAGGHFVISI 248 (305)
Q Consensus 199 ~D~~~~~~~~~~~~~-fD~V~~d~~--~~~~~~~l~~~a--~~~LkpGG~lv~s~ 248 (305)
.|+.+.... ....+ ||+|++|++ ..+...++. .+ .++|||||.|++++
T Consensus 111 ~d~~~~~~~-~~~~~~fD~I~~~~~~~~~~~~~~l~-~~~~~~~LkpgG~l~i~~ 163 (201)
T 2ift_A 111 QSSLDFLKQ-PQNQPHFDVVFLDPPFHFNLAEQAIS-LLCENNWLKPNALIYVET 163 (201)
T ss_dssp SCHHHHTTS-CCSSCCEEEEEECCCSSSCHHHHHHH-HHHHTTCEEEEEEEEEEE
T ss_pred CCHHHHHHh-hccCCCCCEEEECCCCCCccHHHHHH-HHHhcCccCCCcEEEEEE
Confidence 998654321 11457 999999998 334445555 66 67899999999987
|
| >2bm8_A Cephalosporin hydroxylase CMCI; cephamycin biosynthesis; 2.5A {Streptomyces clavuligerus} SCOP: c.66.1.50 PDB: 2bm9_A* 2br5_A* 2br4_A* 2br3_A* | Back alignment and structure |
|---|
Probab=99.44 E-value=2.2e-13 Score=119.91 Aligned_cols=101 Identities=19% Similarity=0.254 Sum_probs=80.2
Q ss_pred CCCEEEEEecCCCccHHHHHhh---hCCCcEEEEEeCChHHHHHHHHHHHc-CCCeEEEEccCCCCcccccCC-CcEeEE
Q 021911 143 PGARVLYLGAASGTTVSHVSDI---VGPNGVVYAVEFSHRSGRDLVNMAKK-RTNVIPIIEDARHPAKYRMLV-GMVDVI 217 (305)
Q Consensus 143 ~g~~VLDlG~G~G~~t~~la~~---~~~~~~V~avD~s~~~~~~l~~~a~~-~~nI~~~~~D~~~~~~~~~~~-~~fD~V 217 (305)
+..+|||||||+|..+..+|+. +.+.++|++||+|+ .+++.++. .++|++++.|+.+........ .+||+|
T Consensus 81 ~~~~VLDiG~GtG~~t~~la~~~~~~~~~~~V~gvD~s~----~~l~~a~~~~~~v~~~~gD~~~~~~l~~~~~~~fD~I 156 (236)
T 2bm8_A 81 RPRTIVELGVYNGGSLAWFRDLTKIMGIDCQVIGIDRDL----SRCQIPASDMENITLHQGDCSDLTTFEHLREMAHPLI 156 (236)
T ss_dssp CCSEEEEECCTTSHHHHHHHHHHHHTTCCCEEEEEESCC----TTCCCCGGGCTTEEEEECCSSCSGGGGGGSSSCSSEE
T ss_pred CCCEEEEEeCCCCHHHHHHHHhhhhcCCCCEEEEEeCCh----HHHHHHhccCCceEEEECcchhHHHHHhhccCCCCEE
Confidence 4689999999999999999997 45678999999999 55444433 268999999998752111122 379999
Q ss_pred EEeCCChhHHHHHHHHHhc-cCCCCcEEEEEE
Q 021911 218 FSDVAQPDQARILALNASY-FLKAGGHFVISI 248 (305)
Q Consensus 218 ~~d~~~~~~~~~l~~~a~~-~LkpGG~lv~s~ 248 (305)
+++..+.+...++. ++.+ +|||||+|++..
T Consensus 157 ~~d~~~~~~~~~l~-~~~r~~LkpGG~lv~~d 187 (236)
T 2bm8_A 157 FIDNAHANTFNIMK-WAVDHLLEEGDYFIIED 187 (236)
T ss_dssp EEESSCSSHHHHHH-HHHHHTCCTTCEEEECS
T ss_pred EECCchHhHHHHHH-HHHHhhCCCCCEEEEEe
Confidence 99998777777776 8886 999999999975
|
| >3lec_A NADB-rossmann superfamily protein; PSI, MCSG, structural genomics, midwest CENT structural genomics, protein structure initiative; 1.80A {Streptococcus agalactiae} | Back alignment and structure |
|---|
Probab=99.44 E-value=2.9e-12 Score=112.15 Aligned_cols=143 Identities=15% Similarity=0.109 Sum_probs=106.9
Q ss_pred CCCCCCEEEEEecCCCccHHHHHhhhCCCcEEEEEeCChHHHHHHHHHHHcC---CCeEEEEccCCCCcccccCCCcEeE
Q 021911 140 WIKPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKR---TNVIPIIEDARHPAKYRMLVGMVDV 216 (305)
Q Consensus 140 ~~~~g~~VLDlG~G~G~~t~~la~~~~~~~~V~avD~s~~~~~~l~~~a~~~---~nI~~~~~D~~~~~~~~~~~~~fD~ 216 (305)
.++++.+|||+|||+|..+..++.. ++..+|+|+|+++.+++.+.++++.. .+|++++.|..+.... ...||+
T Consensus 18 ~v~~g~~VlDIGtGsG~l~i~la~~-~~~~~V~AvDi~~~al~~A~~N~~~~gl~~~I~~~~gD~l~~~~~---~~~~D~ 93 (230)
T 3lec_A 18 YVPKGARLLDVGSDHAYLPIFLLQM-GYCDFAIAGEVVNGPYQSALKNVSEHGLTSKIDVRLANGLSAFEE---ADNIDT 93 (230)
T ss_dssp TSCTTEEEEEETCSTTHHHHHHHHT-TCEEEEEEEESSHHHHHHHHHHHHHTTCTTTEEEEECSGGGGCCG---GGCCCE
T ss_pred hCCCCCEEEEECCchHHHHHHHHHh-CCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECchhhcccc---ccccCE
Confidence 4678899999999999999999987 45668999999997777777776655 4699999998765421 237998
Q ss_pred EE-EeCCChhHHHHHHHHHhccCCCCcEEEEEEcccccCCCCchhhhHHHHHHHHHHCCCcEeEEeecCCCCCceEEEEE
Q 021911 217 IF-SDVAQPDQARILALNASYFLKAGGHFVISIKANCIDSTVPAEAVFQSEVKKLQQDQFKPFEQVTLEPFERDHACVVG 295 (305)
Q Consensus 217 V~-~d~~~~~~~~~l~~~a~~~LkpGG~lv~s~~~~~i~~~~~~~~v~~~~~~~l~~~Gf~~~e~~~l~p~~~~~~~vv~ 295 (305)
|+ +.+--..-.+++. .+...|+++++|+++.. ... ....++|.++||.+.+..-+..-.+-|-++++
T Consensus 94 IviaGmGg~lI~~IL~-~~~~~l~~~~~lIlqp~-------~~~----~~lr~~L~~~Gf~i~~E~lv~e~~~~Yeii~~ 161 (230)
T 3lec_A 94 ITICGMGGRLIADILN-NDIDKLQHVKTLVLQPN-------NRE----DDLRKWLAANDFEIVAEDILTENDKRYEILVV 161 (230)
T ss_dssp EEEEEECHHHHHHHHH-HTGGGGTTCCEEEEEES-------SCH----HHHHHHHHHTTEEEEEEEEEEC--CEEEEEEE
T ss_pred EEEeCCchHHHHHHHH-HHHHHhCcCCEEEEECC-------CCh----HHHHHHHHHCCCEEEEEEEEEECCEEEEEEEE
Confidence 76 5665666777777 88999999999999861 112 22357888999999887666555555666666
Q ss_pred EEc
Q 021911 296 GYR 298 (305)
Q Consensus 296 ~~~ 298 (305)
.+.
T Consensus 162 ~~~ 164 (230)
T 3lec_A 162 KHG 164 (230)
T ss_dssp EEC
T ss_pred EeC
Confidence 654
|
| >1i1n_A Protein-L-isoaspartate O-methyltransferase; S-adenosyl homocysteine, protein repair; HET: SAH; 1.50A {Homo sapiens} SCOP: c.66.1.7 PDB: 1kr5_A* | Back alignment and structure |
|---|
Probab=99.43 E-value=5.7e-13 Score=115.50 Aligned_cols=102 Identities=25% Similarity=0.317 Sum_probs=81.9
Q ss_pred CCCCCCEEEEEecCCCccHHHHHhhhCCCcEEEEEeCChHHHHHHHHHHHc-------CCCeEEEEccCCCCcccccCCC
Q 021911 140 WIKPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKK-------RTNVIPIIEDARHPAKYRMLVG 212 (305)
Q Consensus 140 ~~~~g~~VLDlG~G~G~~t~~la~~~~~~~~V~avD~s~~~~~~l~~~a~~-------~~nI~~~~~D~~~~~~~~~~~~ 212 (305)
.++++.+|||+|||+|.++.++++.+++.++|+++|+|+.+++.+.+.+.. ..++.+++.|+..... ...
T Consensus 74 ~~~~~~~vLDiG~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~---~~~ 150 (226)
T 1i1n_A 74 QLHEGAKALDVGSGSGILTACFARMVGCTGKVIGIDHIKELVDDSVNNVRKDDPTLLSSGRVQLVVGDGRMGYA---EEA 150 (226)
T ss_dssp TSCTTCEEEEETCTTSHHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHCTHHHHTSSEEEEESCGGGCCG---GGC
T ss_pred hCCCCCEEEEEcCCcCHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhhcccccCCCcEEEEECCcccCcc---cCC
Confidence 367889999999999999999999887667999999999776666555543 3589999999875432 246
Q ss_pred cEeEEEEeCCChhHHHHHHHHHhccCCCCcEEEEEE
Q 021911 213 MVDVIFSDVAQPDQARILALNASYFLKAGGHFVISI 248 (305)
Q Consensus 213 ~fD~V~~d~~~~~~~~~l~~~a~~~LkpGG~lv~s~ 248 (305)
+||+|+++.+++.. +. ++.++|||||+|++++
T Consensus 151 ~fD~i~~~~~~~~~---~~-~~~~~LkpgG~lv~~~ 182 (226)
T 1i1n_A 151 PYDAIHVGAAAPVV---PQ-ALIDQLKPGGRLILPV 182 (226)
T ss_dssp CEEEEEECSBBSSC---CH-HHHHTEEEEEEEEEEE
T ss_pred CcCEEEECCchHHH---HH-HHHHhcCCCcEEEEEE
Confidence 89999998886432 23 6778999999999998
|
| >2vdv_E TRNA (guanine-N(7)-)-methyltransferase; S-adenosyl-L-methionine, phosphorylation, M7G, spout MT, tRNA processing; HET: SAM; 2.30A {Saccharomyces cerevisiae} PDB: 2vdu_E | Back alignment and structure |
|---|
Probab=99.43 E-value=1.6e-12 Score=114.72 Aligned_cols=106 Identities=15% Similarity=0.195 Sum_probs=82.8
Q ss_pred CCCCCEEEEEecCCCccHHHHHhhhCCCcEEEEEeCChHHHHHHHHHHHc----------CCCeEEEEccCCCCcccccC
Q 021911 141 IKPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKK----------RTNVIPIIEDARHPAKYRML 210 (305)
Q Consensus 141 ~~~g~~VLDlG~G~G~~t~~la~~~~~~~~V~avD~s~~~~~~l~~~a~~----------~~nI~~~~~D~~~~~~~~~~ 210 (305)
+.++.+|||+|||+|.++..+|... +...|++||+|+.++..+.+.++. .+|+.+++.|+.+..+....
T Consensus 47 ~~~~~~vLDiGcG~G~~~~~la~~~-~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~nv~~~~~D~~~~l~~~~~ 125 (246)
T 2vdv_E 47 MTKKVTIADIGCGFGGLMIDLSPAF-PEDLILGMEIRVQVTNYVEDRIIALRNNTASKHGFQNINVLRGNAMKFLPNFFE 125 (246)
T ss_dssp BSCCEEEEEETCTTSHHHHHHHHHS-TTSEEEEEESCHHHHHHHHHHHHHHHHTC-CCSTTTTEEEEECCTTSCGGGTSC
T ss_pred CCCCCEEEEEcCCCCHHHHHHHHhC-CCCCEEEEEcCHHHHHHHHHHHHHHhhccccccCCCcEEEEeccHHHHHHHhcc
Confidence 4567899999999999999999985 567999999999776666555432 26899999999874332233
Q ss_pred CCcEeEEEEeCCChhH-----------HHHHHHHHhccCCCCcEEEEEE
Q 021911 211 VGMVDVIFSDVAQPDQ-----------ARILALNASYFLKAGGHFVISI 248 (305)
Q Consensus 211 ~~~fD~V~~d~~~~~~-----------~~~l~~~a~~~LkpGG~lv~s~ 248 (305)
...+|.|+++.+.+.. ..++. ++.++|||||.|++.+
T Consensus 126 ~~~~d~v~~~~p~p~~k~~~~~~r~~~~~~l~-~~~~~LkpgG~l~~~t 173 (246)
T 2vdv_E 126 KGQLSKMFFCFPDPHFKQRKHKARIITNTLLS-EYAYVLKEGGVVYTIT 173 (246)
T ss_dssp TTCEEEEEEESCCCC------CSSCCCHHHHH-HHHHHEEEEEEEEEEE
T ss_pred ccccCEEEEECCCcccccchhHHhhccHHHHH-HHHHHcCCCCEEEEEe
Confidence 5789999988775542 45666 8999999999999986
|
| >3m33_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, MCSG, midwest center for structural genomics; 2.19A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=99.43 E-value=4e-13 Score=116.84 Aligned_cols=132 Identities=14% Similarity=0.107 Sum_probs=92.6
Q ss_pred chhhHHHHHHHccccccCCCCCCEEEEEecCCCccHHHHHhhhCCCcEEEEEeCChHHHHHHHHHHHcC-CCeEEEEccC
Q 021911 123 PFRSKLAAAVLGGVDNIWIKPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKR-TNVIPIIEDA 201 (305)
Q Consensus 123 ~~~s~l~a~ll~~l~~~~~~~g~~VLDlG~G~G~~t~~la~~~~~~~~V~avD~s~~~~~~l~~~a~~~-~nI~~~~~D~ 201 (305)
|....+...++.. .+.++.+|||+|||+|.++..+++. ..+|+++|+|+ .+++.++++ +++.+++.|+
T Consensus 32 ~~~~~l~~~~~~~----~~~~~~~vLDiGcG~G~~~~~l~~~---~~~v~~vD~s~----~~~~~a~~~~~~~~~~~~d~ 100 (226)
T 3m33_A 32 PDPELTFDLWLSR----LLTPQTRVLEAGCGHGPDAARFGPQ---AARWAAYDFSP----ELLKLARANAPHADVYEWNG 100 (226)
T ss_dssp SCTTHHHHHHHHH----HCCTTCEEEEESCTTSHHHHHHGGG---SSEEEEEESCH----HHHHHHHHHCTTSEEEECCS
T ss_pred CCHHHHHHHHHHh----cCCCCCeEEEeCCCCCHHHHHHHHc---CCEEEEEECCH----HHHHHHHHhCCCceEEEcch
Confidence 4455566655421 2467899999999999999999987 35999999999 555555543 7899999999
Q ss_pred CCCcccccC-CCcEeEEEEeCCChhHHHHHHHHHhccCCCCcEEEEEEcccccCCCCchhhhHHHHHHHHHHCCCcEeEE
Q 021911 202 RHPAKYRML-VGMVDVIFSDVAQPDQARILALNASYFLKAGGHFVISIKANCIDSTVPAEAVFQSEVKKLQQDQFKPFEQ 280 (305)
Q Consensus 202 ~~~~~~~~~-~~~fD~V~~d~~~~~~~~~l~~~a~~~LkpGG~lv~s~~~~~i~~~~~~~~v~~~~~~~l~~~Gf~~~e~ 280 (305)
.+..+. . .++||+|+++. ++..++. ++.++|||||+|+... .. ... ....+.+++.||+..+.
T Consensus 101 ~~~~~~--~~~~~fD~v~~~~---~~~~~l~-~~~~~LkpgG~l~~~~---~~---~~~----~~~~~~l~~~Gf~~~~~ 164 (226)
T 3m33_A 101 KGELPA--GLGAPFGLIVSRR---GPTSVIL-RLPELAAPDAHFLYVG---PR---LNV----PEVPERLAAVGWDIVAE 164 (226)
T ss_dssp CSSCCT--TCCCCEEEEEEES---CCSGGGG-GHHHHEEEEEEEEEEE---SS---SCC----THHHHHHHHTTCEEEEE
T ss_pred hhccCC--cCCCCEEEEEeCC---CHHHHHH-HHHHHcCCCcEEEEeC---Cc---CCH----HHHHHHHHHCCCeEEEE
Confidence 643322 2 46999999983 4455565 8889999999999332 11 111 12245667888887654
Q ss_pred e
Q 021911 281 V 281 (305)
Q Consensus 281 ~ 281 (305)
.
T Consensus 165 ~ 165 (226)
T 3m33_A 165 D 165 (226)
T ss_dssp E
T ss_pred E
Confidence 3
|
| >3cc8_A Putative methyltransferase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS transferase; 1.64A {Bacillus cereus} | Back alignment and structure |
|---|
Probab=99.43 E-value=3.4e-12 Score=109.93 Aligned_cols=133 Identities=14% Similarity=0.110 Sum_probs=94.0
Q ss_pred CCCCEEEEEecCCCccHHHHHhhhCCCcEEEEEeCChHHHHHHHHHHHcCCCeEEEEccCCCCcccccCCCcEeEEEEeC
Q 021911 142 KPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKRTNVIPIIEDARHPAKYRMLVGMVDVIFSDV 221 (305)
Q Consensus 142 ~~g~~VLDlG~G~G~~t~~la~~~~~~~~V~avD~s~~~~~~l~~~a~~~~nI~~~~~D~~~~~~~~~~~~~fD~V~~d~ 221 (305)
.++.+|||+|||+|.++..+++. + .+|+++|+|+ .+++.++++ ...+++.|+.+... .....+||+|++..
T Consensus 31 ~~~~~vLdiG~G~G~~~~~l~~~--~-~~~~~~D~~~----~~~~~~~~~-~~~~~~~d~~~~~~-~~~~~~fD~v~~~~ 101 (230)
T 3cc8_A 31 KEWKEVLDIGCSSGALGAAIKEN--G-TRVSGIEAFP----EAAEQAKEK-LDHVVLGDIETMDM-PYEEEQFDCVIFGD 101 (230)
T ss_dssp TTCSEEEEETCTTSHHHHHHHTT--T-CEEEEEESSH----HHHHHHHTT-SSEEEESCTTTCCC-CSCTTCEEEEEEES
T ss_pred cCCCcEEEeCCCCCHHHHHHHhc--C-CeEEEEeCCH----HHHHHHHHh-CCcEEEcchhhcCC-CCCCCccCEEEECC
Confidence 57899999999999999999987 3 6999999999 667777654 24788899876321 12346899999876
Q ss_pred C---ChhHHHHHHHHHhccCCCCcEEEEEEccccc----------CCCCc------h---hh-hHHHHHHHHHHCCCcEe
Q 021911 222 A---QPDQARILALNASYFLKAGGHFVISIKANCI----------DSTVP------A---EA-VFQSEVKKLQQDQFKPF 278 (305)
Q Consensus 222 ~---~~~~~~~l~~~a~~~LkpGG~lv~s~~~~~i----------~~~~~------~---~~-v~~~~~~~l~~~Gf~~~ 278 (305)
. .++...++. ++.++|||||+++++++.... ..... . .. -..+..+.++++||+++
T Consensus 102 ~l~~~~~~~~~l~-~~~~~L~~gG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~ 180 (230)
T 3cc8_A 102 VLEHLFDPWAVIE-KVKPYIKQNGVILASIPNVSHISVLAPLLAGNWTYTEYGLLDKTHIRFFTFNEMLRMFLKAGYSIS 180 (230)
T ss_dssp CGGGSSCHHHHHH-HTGGGEEEEEEEEEEEECTTSHHHHHHHHTTCCCCBSSSTTBTTCCCCCCHHHHHHHHHHTTEEEE
T ss_pred hhhhcCCHHHHHH-HHHHHcCCCCEEEEEeCCcchHHHHHHHhcCCceeccCCCCCcceEEEecHHHHHHHHHHcCCeEE
Confidence 5 345667777 999999999999998743210 00000 0 00 11223456688999998
Q ss_pred EEeecC
Q 021911 279 EQVTLE 284 (305)
Q Consensus 279 e~~~l~ 284 (305)
++..+.
T Consensus 181 ~~~~~~ 186 (230)
T 3cc8_A 181 KVDRVY 186 (230)
T ss_dssp EEEEEE
T ss_pred EEEecc
Confidence 876543
|
| >3bkx_A SAM-dependent methyltransferase; YP_807781.1, cyclopropane-fatty-acyl-phospholipid synthase-L protein, methyltransferase domain; 1.85A {Lactobacillus casei} | Back alignment and structure |
|---|
Probab=99.43 E-value=1.7e-12 Score=115.68 Aligned_cols=111 Identities=13% Similarity=0.127 Sum_probs=81.2
Q ss_pred cccCCCCCCEEEEEecCCCccHHHHHhhhCCCcEEEEEeCChH------HHHHHHHHHHcC---CCeEEEEcc-CCCCcc
Q 021911 137 DNIWIKPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHR------SGRDLVNMAKKR---TNVIPIIED-ARHPAK 206 (305)
Q Consensus 137 ~~~~~~~g~~VLDlG~G~G~~t~~la~~~~~~~~V~avD~s~~------~~~~l~~~a~~~---~nI~~~~~D-~~~~~~ 206 (305)
+.+.+.++.+|||||||+|.++..+++.+++..+|+++|+|+. ++..+.+.++.. ++|.+++.| +....
T Consensus 37 ~~~~~~~~~~vLDiGcG~G~~~~~l~~~~g~~~~v~gvD~s~~~~~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~- 115 (275)
T 3bkx_A 37 EAWQVKPGEKILEIGCGQGDLSAVLADQVGSSGHVTGIDIASPDYGAPLTLGQAWNHLLAGPLGDRLTVHFNTNLSDDL- 115 (275)
T ss_dssp HHHTCCTTCEEEEESCTTSHHHHHHHHHHCTTCEEEEECSSCTTCCSSSCHHHHHHHHHTSTTGGGEEEECSCCTTTCC-
T ss_pred HHcCCCCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEEECCccccccHHHHHHHHHHHHhcCCCCceEEEECChhhhcc-
Confidence 3346788999999999999999999998766679999999985 555555555443 479999998 32221
Q ss_pred cccCCCcEeEEEEeCC---ChhHHHHHHHHHhccCCCCcEEEEEEc
Q 021911 207 YRMLVGMVDVIFSDVA---QPDQARILALNASYFLKAGGHFVISIK 249 (305)
Q Consensus 207 ~~~~~~~fD~V~~d~~---~~~~~~~l~~~a~~~LkpGG~lv~s~~ 249 (305)
......+||+|++..+ .++...++. .+..+++|||+|++++.
T Consensus 116 ~~~~~~~fD~v~~~~~l~~~~~~~~~~~-~~~~l~~~gG~l~~~~~ 160 (275)
T 3bkx_A 116 GPIADQHFDRVVLAHSLWYFASANALAL-LFKNMAAVCDHVDVAEW 160 (275)
T ss_dssp GGGTTCCCSEEEEESCGGGSSCHHHHHH-HHHHHTTTCSEEEEEEE
T ss_pred CCCCCCCEEEEEEccchhhCCCHHHHHH-HHHHHhCCCCEEEEEEe
Confidence 1123578999999766 234444443 67777888999999873
|
| >4dcm_A Ribosomal RNA large subunit methyltransferase G; 23S rRNA (guanine1835-N2)-methyltransferase; HET: SAM; 2.30A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.43 E-value=5.7e-13 Score=125.12 Aligned_cols=103 Identities=15% Similarity=0.050 Sum_probs=81.5
Q ss_pred CCCCCCEEEEEecCCCccHHHHHhhhCCCcEEEEEeCChHHHHHHHHHHHcC-----CCeEEEEccCCCCcccccCCCcE
Q 021911 140 WIKPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKR-----TNVIPIIEDARHPAKYRMLVGMV 214 (305)
Q Consensus 140 ~~~~g~~VLDlG~G~G~~t~~la~~~~~~~~V~avD~s~~~~~~l~~~a~~~-----~nI~~~~~D~~~~~~~~~~~~~f 214 (305)
...++.+|||+|||+|.++..+++.. +..+|++||+|+.+++.+.++++.. .++.+++.|+.... ...+|
T Consensus 219 ~~~~~~~VLDlGcG~G~~s~~la~~~-p~~~V~gvD~s~~al~~Ar~n~~~ngl~~~~~v~~~~~D~~~~~----~~~~f 293 (375)
T 4dcm_A 219 PENLEGEIVDLGCGNGVIGLTLLDKN-PQAKVVFVDESPMAVASSRLNVETNMPEALDRCEFMINNALSGV----EPFRF 293 (375)
T ss_dssp CCSCCSEEEEETCTTCHHHHHHHHHC-TTCEEEEEESCHHHHHHHHHHHHHHCGGGGGGEEEEECSTTTTC----CTTCE
T ss_pred cccCCCeEEEEeCcchHHHHHHHHHC-CCCEEEEEECcHHHHHHHHHHHHHcCCCcCceEEEEechhhccC----CCCCe
Confidence 45567899999999999999999985 5679999999997766666555543 26888999998743 24689
Q ss_pred eEEEEeCCCh--------hHHHHHHHHHhccCCCCcEEEEEE
Q 021911 215 DVIFSDVAQP--------DQARILALNASYFLKAGGHFVISI 248 (305)
Q Consensus 215 D~V~~d~~~~--------~~~~~l~~~a~~~LkpGG~lv~s~ 248 (305)
|+|++|+|.. ...+++. ++.++|||||.|+++.
T Consensus 294 D~Ii~nppfh~~~~~~~~~~~~~l~-~~~~~LkpgG~l~iv~ 334 (375)
T 4dcm_A 294 NAVLCNPPFHQQHALTDNVAWEMFH-HARRCLKINGELYIVA 334 (375)
T ss_dssp EEEEECCCC-------CCHHHHHHH-HHHHHEEEEEEEEEEE
T ss_pred eEEEECCCcccCcccCHHHHHHHHH-HHHHhCCCCcEEEEEE
Confidence 9999998832 2234565 9999999999999986
|
| >4dmg_A Putative uncharacterized protein TTHA1493; rRNA, methyltransferase, S-adenosyl-methionine, 23S ribosoma transferase; HET: SAM; 1.70A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.42 E-value=1.2e-12 Score=123.63 Aligned_cols=102 Identities=20% Similarity=0.155 Sum_probs=79.1
Q ss_pred CCCCCEEEEEecCCCccHHHHHhhhCCCcEEEEEeCChHHHHHHHHHHHcC-CCeEEEEccCCCCcccccCCCcEeEEEE
Q 021911 141 IKPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKR-TNVIPIIEDARHPAKYRMLVGMVDVIFS 219 (305)
Q Consensus 141 ~~~g~~VLDlG~G~G~~t~~la~~~~~~~~V~avD~s~~~~~~l~~~a~~~-~nI~~~~~D~~~~~~~~~~~~~fD~V~~ 219 (305)
.+++.+|||+|||+|.++.++|.. + ..|++||+|+.+++.+.++++.+ -...+++.|+.+.... ....||+|++
T Consensus 212 ~~~g~~VLDlg~GtG~~sl~~a~~-g--a~V~avDis~~al~~a~~n~~~ng~~~~~~~~D~~~~l~~--~~~~fD~Ii~ 286 (393)
T 4dmg_A 212 VRPGERVLDVYSYVGGFALRAARK-G--AYALAVDKDLEALGVLDQAALRLGLRVDIRHGEALPTLRG--LEGPFHHVLL 286 (393)
T ss_dssp CCTTCEEEEESCTTTHHHHHHHHT-T--CEEEEEESCHHHHHHHHHHHHHHTCCCEEEESCHHHHHHT--CCCCEEEEEE
T ss_pred hcCCCeEEEcccchhHHHHHHHHc-C--CeEEEEECCHHHHHHHHHHHHHhCCCCcEEEccHHHHHHH--hcCCCCEEEE
Confidence 456899999999999999999986 2 34999999997777666666543 2235668888765432 1345999999
Q ss_pred eCCC------------hhHHHHHHHHHhccCCCCcEEEEEE
Q 021911 220 DVAQ------------PDQARILALNASYFLKAGGHFVISI 248 (305)
Q Consensus 220 d~~~------------~~~~~~l~~~a~~~LkpGG~lv~s~ 248 (305)
|+|+ .++.+++. .+.++|||||+|++++
T Consensus 287 dpP~f~~~~~~~~~~~~~~~~ll~-~a~~~LkpGG~Lv~~s 326 (393)
T 4dmg_A 287 DPPTLVKRPEELPAMKRHLVDLVR-EALRLLAEEGFLWLSS 326 (393)
T ss_dssp CCCCCCSSGGGHHHHHHHHHHHHH-HHHHTEEEEEEEEEEE
T ss_pred CCCcCCCCHHHHHHHHHHHHHHHH-HHHHhcCCCCEEEEEE
Confidence 9995 35567776 8999999999999887
|
| >2g72_A Phenylethanolamine N-methyltransferase; HET: SAM F21; 2.00A {Homo sapiens} SCOP: c.66.1.15 PDB: 1yz3_A* 2an4_A* 2an5_A* 2g70_A* 2g71_A* 2an3_A* 2g8n_A* 2ony_A* 3hcb_A* 3hcc_A* 3hcd_A* 3hcf_A* 3kpj_A* 3kpu_A* 3kpv_A* 3kpw_A* 3kpy_A* 3kqm_A* 3kqo_A* 3kqp_A* ... | Back alignment and structure |
|---|
Probab=99.42 E-value=1.5e-12 Score=117.23 Aligned_cols=140 Identities=14% Similarity=0.090 Sum_probs=87.1
Q ss_pred CCCCEEEEEecCCCccHHHHHhhhCCCcEEEEEeCChHHHHHHHHHHHcC------------------------------
Q 021911 142 KPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKR------------------------------ 191 (305)
Q Consensus 142 ~~g~~VLDlG~G~G~~t~~la~~~~~~~~V~avD~s~~~~~~l~~~a~~~------------------------------ 191 (305)
.++.+|||||||+|.++..++.. ...+|+++|+|+.+++.+.+.+++.
T Consensus 70 ~~~~~vLDiGcG~G~~~~l~~~~--~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~ 147 (289)
T 2g72_A 70 VSGRTLIDIGSGPTVYQLLSACS--HFEDITMTDFLEVNRQELGRWLQEEPGAFNWSMYSQHACLIEGKGECWQDKERQL 147 (289)
T ss_dssp SCCSEEEEETCTTCCGGGTTGGG--GCSEEEEECSCHHHHHHHHHHHTTCTTCCCCHHHHHHHHHHHCSCCCHHHHHHHH
T ss_pred CCCCeEEEECCCcChHHHHhhcc--CCCeEEEeCCCHHHHHHHHHHHhhCcccccchhhhhHHHHhcCcccchhhhHHHH
Confidence 36789999999999955444443 2358999999996655444432211
Q ss_pred --CCeEEEEccCCCCccc---ccCCCcEeEEEEeCC-------ChhHHHHHHHHHhccCCCCcEEEEEEcccccCCCC-c
Q 021911 192 --TNVIPIIEDARHPAKY---RMLVGMVDVIFSDVA-------QPDQARILALNASYFLKAGGHFVISIKANCIDSTV-P 258 (305)
Q Consensus 192 --~nI~~~~~D~~~~~~~---~~~~~~fD~V~~d~~-------~~~~~~~l~~~a~~~LkpGG~lv~s~~~~~i~~~~-~ 258 (305)
..+.++++|+....+. ....++||+|++... .++...+|. ++.++|||||+|+++.......... .
T Consensus 148 ~~~~~~~~~~D~~~~~~~~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~-~~~r~LkpGG~l~~~~~~~~~~~~~~~ 226 (289)
T 2g72_A 148 RARVKRVLPIDVHQPQPLGAGSPAPLPADALVSAFCLEAVSPDLASFQRALD-HITTLLRPGGHLLLIGALEESWYLAGE 226 (289)
T ss_dssp HHHEEEEECCCTTSSSTTCSSCSSCSSEEEEEEESCHHHHCSSHHHHHHHHH-HHHTTEEEEEEEEEEEEESCCEEEETT
T ss_pred HhhhceEEecccCCCCCccccccCCCCCCEEEehhhhhhhcCCHHHHHHHHH-HHHHhcCCCCEEEEEEecCcceEEcCC
Confidence 0145777798773221 122457999999776 125667776 9999999999999975211100000 0
Q ss_pred ----hhhhHHHH-HHHHHHCCCcEeEEeecC
Q 021911 259 ----AEAVFQSE-VKKLQQDQFKPFEQVTLE 284 (305)
Q Consensus 259 ----~~~v~~~~-~~~l~~~Gf~~~e~~~l~ 284 (305)
....-.++ .+.|+++||++++...+.
T Consensus 227 ~~~~~~~~~~~~l~~~l~~aGf~~~~~~~~~ 257 (289)
T 2g72_A 227 ARLTVVPVSEEEVREALVRSGYKVRDLRTYI 257 (289)
T ss_dssp EEEECCCCCHHHHHHHHHHTTEEEEEEEEEE
T ss_pred eeeeeccCCHHHHHHHHHHcCCeEEEeeEee
Confidence 00011222 466788999988766543
|
| >3m70_A Tellurite resistance protein TEHB homolog; structural genomics, PSI-2, protein ST initiative; 1.95A {Haemophilus influenzae} | Back alignment and structure |
|---|
Probab=99.42 E-value=2.5e-12 Score=115.46 Aligned_cols=100 Identities=22% Similarity=0.177 Sum_probs=80.8
Q ss_pred CCCCCEEEEEecCCCccHHHHHhhhCCCcEEEEEeCChHHHHHHHHHHHcC-CCeEEEEccCCCCcccccCCCcEeEEEE
Q 021911 141 IKPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKR-TNVIPIIEDARHPAKYRMLVGMVDVIFS 219 (305)
Q Consensus 141 ~~~g~~VLDlG~G~G~~t~~la~~~~~~~~V~avD~s~~~~~~l~~~a~~~-~nI~~~~~D~~~~~~~~~~~~~fD~V~~ 219 (305)
..++.+|||+|||+|.++..+++. ..+|+++|+|+.+++.+.+.+... .++.+++.|+..... ..+||+|++
T Consensus 118 ~~~~~~vLD~GcG~G~~~~~l~~~---g~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~----~~~fD~i~~ 190 (286)
T 3m70_A 118 IISPCKVLDLGCGQGRNSLYLSLL---GYDVTSWDHNENSIAFLNETKEKENLNISTALYDINAANI----QENYDFIVS 190 (286)
T ss_dssp HSCSCEEEEESCTTCHHHHHHHHT---TCEEEEEESCHHHHHHHHHHHHHTTCCEEEEECCGGGCCC----CSCEEEEEE
T ss_pred ccCCCcEEEECCCCCHHHHHHHHC---CCeEEEEECCHHHHHHHHHHHHHcCCceEEEEeccccccc----cCCccEEEE
Confidence 347899999999999999999987 248999999997666666655544 389999999977542 578999999
Q ss_pred eCC-----ChhHHHHHHHHHhccCCCCcEEEEEE
Q 021911 220 DVA-----QPDQARILALNASYFLKAGGHFVISI 248 (305)
Q Consensus 220 d~~-----~~~~~~~l~~~a~~~LkpGG~lv~s~ 248 (305)
+.+ .++...++. ++.++|||||.|++.+
T Consensus 191 ~~~~~~~~~~~~~~~l~-~~~~~LkpgG~l~i~~ 223 (286)
T 3m70_A 191 TVVFMFLNRERVPSIIK-NMKEHTNVGGYNLIVA 223 (286)
T ss_dssp CSSGGGSCGGGHHHHHH-HHHHTEEEEEEEEEEE
T ss_pred ccchhhCCHHHHHHHHH-HHHHhcCCCcEEEEEE
Confidence 775 245567776 9999999999988876
|
| >3dmg_A Probable ribosomal RNA small subunit methyltransf; monomethyltranserase, 16S rRNA methyltransferase, N2 G1207 methyltransferase; HET: SAH; 1.55A {Thermus thermophilus} PDB: 3dmf_A* 3dmh_A* 2zul_A* 2zwv_A* | Back alignment and structure |
|---|
Probab=99.41 E-value=3.7e-13 Score=126.58 Aligned_cols=100 Identities=20% Similarity=0.188 Sum_probs=81.0
Q ss_pred CCCCEEEEEecCCCccHHHHHhhhCCCcEEEEEeCChHHHHHHHHHHHcC-CCeEEEEccCCCCcccccCCCcEeEEEEe
Q 021911 142 KPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKR-TNVIPIIEDARHPAKYRMLVGMVDVIFSD 220 (305)
Q Consensus 142 ~~g~~VLDlG~G~G~~t~~la~~~~~~~~V~avD~s~~~~~~l~~~a~~~-~nI~~~~~D~~~~~~~~~~~~~fD~V~~d 220 (305)
.++.+|||+|||+|.++..+++. ..+|++||+|+.+++.+.++++.. .++++++.|+.+.... ..+||+|++|
T Consensus 232 ~~~~~VLDlGcG~G~~~~~la~~---g~~V~gvDis~~al~~A~~n~~~~~~~v~~~~~D~~~~~~~---~~~fD~Ii~n 305 (381)
T 3dmg_A 232 VRGRQVLDLGAGYGALTLPLARM---GAEVVGVEDDLASVLSLQKGLEANALKAQALHSDVDEALTE---EARFDIIVTN 305 (381)
T ss_dssp TTTCEEEEETCTTSTTHHHHHHT---TCEEEEEESBHHHHHHHHHHHHHTTCCCEEEECSTTTTSCT---TCCEEEEEEC
T ss_pred CCCCEEEEEeeeCCHHHHHHHHc---CCEEEEEECCHHHHHHHHHHHHHcCCCeEEEEcchhhcccc---CCCeEEEEEC
Confidence 46789999999999999999987 249999999997776666666554 3689999999876432 4699999999
Q ss_pred CCC--------hhHHHHHHHHHhccCCCCcEEEEEE
Q 021911 221 VAQ--------PDQARILALNASYFLKAGGHFVISI 248 (305)
Q Consensus 221 ~~~--------~~~~~~l~~~a~~~LkpGG~lv~s~ 248 (305)
+|. .+...++. ++.++|||||.|++++
T Consensus 306 pp~~~~~~~~~~~~~~~l~-~~~~~LkpGG~l~iv~ 340 (381)
T 3dmg_A 306 PPFHVGGAVILDVAQAFVN-VAAARLRPGGVFFLVS 340 (381)
T ss_dssp CCCCTTCSSCCHHHHHHHH-HHHHHEEEEEEEEEEE
T ss_pred CchhhcccccHHHHHHHHH-HHHHhcCcCcEEEEEE
Confidence 872 23455665 9999999999999987
|
| >3c3p_A Methyltransferase; NP_951602.1, structural genomics, joint for structural genomics, JCSG, protein structure initiative transferase; 1.90A {Geobacter sulfurreducens pca} | Back alignment and structure |
|---|
Probab=99.41 E-value=3.4e-13 Score=115.81 Aligned_cols=103 Identities=15% Similarity=0.111 Sum_probs=82.5
Q ss_pred CCCCEEEEEecCCCccHHHHHhhhCCCcEEEEEeCChHHHHHHHHHHHcC---CCeEEEEccCCCCcccccCCCcEeEEE
Q 021911 142 KPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKR---TNVIPIIEDARHPAKYRMLVGMVDVIF 218 (305)
Q Consensus 142 ~~g~~VLDlG~G~G~~t~~la~~~~~~~~V~avD~s~~~~~~l~~~a~~~---~nI~~~~~D~~~~~~~~~~~~~fD~V~ 218 (305)
.+..+|||+|||+|..+.++++.+.+.++|+++|+|+.+++.+.+.++.. .+|++++.|+.+..+. ... ||+|+
T Consensus 55 ~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~--~~~-fD~v~ 131 (210)
T 3c3p_A 55 KQPQLVVVPGDGLGCASWWFARAISISSRVVMIDPDRDNVEHARRMLHDNGLIDRVELQVGDPLGIAAG--QRD-IDILF 131 (210)
T ss_dssp HCCSEEEEESCGGGHHHHHHHTTSCTTCEEEEEESCHHHHHHHHHHHHHHSGGGGEEEEESCHHHHHTT--CCS-EEEEE
T ss_pred hCCCEEEEEcCCccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHCCCCceEEEEEecHHHHhcc--CCC-CCEEE
Confidence 45689999999999999999998754689999999996665555444332 3699999998654221 235 99999
Q ss_pred EeCCChhHHHHHHHHHhccCCCCcEEEEEE
Q 021911 219 SDVAQPDQARILALNASYFLKAGGHFVISI 248 (305)
Q Consensus 219 ~d~~~~~~~~~l~~~a~~~LkpGG~lv~s~ 248 (305)
++....+...++. ++.++|||||.|++..
T Consensus 132 ~~~~~~~~~~~l~-~~~~~LkpgG~lv~~~ 160 (210)
T 3c3p_A 132 MDCDVFNGADVLE-RMNRCLAKNALLIAVN 160 (210)
T ss_dssp EETTTSCHHHHHH-HHGGGEEEEEEEEEES
T ss_pred EcCChhhhHHHHH-HHHHhcCCCeEEEEEC
Confidence 9988888888887 9999999999999864
|
| >2b78_A Hypothetical protein SMU.776; structure genomics, methyltransferase, caries, structural genomics, unknown function; 2.00A {Streptococcus mutans} SCOP: b.122.1.9 c.66.1.51 PDB: 3ldf_A* | Back alignment and structure |
|---|
Probab=99.41 E-value=2.4e-12 Score=121.22 Aligned_cols=134 Identities=17% Similarity=0.163 Sum_probs=95.0
Q ss_pred CCCCEEEEEecCCCccHHHHHhhhCCCcEEEEEeCChHHHHHHHHHHHcC--C--CeEEEEccCCCCccc-ccCCCcEeE
Q 021911 142 KPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKR--T--NVIPIIEDARHPAKY-RMLVGMVDV 216 (305)
Q Consensus 142 ~~g~~VLDlG~G~G~~t~~la~~~~~~~~V~avD~s~~~~~~l~~~a~~~--~--nI~~~~~D~~~~~~~-~~~~~~fD~ 216 (305)
.++.+|||+|||+|.++.++|.. ...+|++||+|+.+++.+.++++.+ . ++++++.|+.+..+. .....+||+
T Consensus 211 ~~~~~VLDl~cGtG~~sl~la~~--ga~~V~~vD~s~~al~~A~~N~~~n~~~~~~v~~~~~D~~~~l~~~~~~~~~fD~ 288 (385)
T 2b78_A 211 AAGKTVLNLFSYTAAFSVAAAMG--GAMATTSVDLAKRSRALSLAHFEANHLDMANHQLVVMDVFDYFKYARRHHLTYDI 288 (385)
T ss_dssp TBTCEEEEETCTTTHHHHHHHHT--TBSEEEEEESCTTHHHHHHHHHHHTTCCCTTEEEEESCHHHHHHHHHHTTCCEEE
T ss_pred cCCCeEEEEeeccCHHHHHHHHC--CCCEEEEEECCHHHHHHHHHHHHHcCCCccceEEEECCHHHHHHHHHHhCCCccE
Confidence 56789999999999999999985 2348999999998888877777665 3 899999998764321 111358999
Q ss_pred EEEeCCCh------------hHHHHHHHHHhccCCCCcEEEEEEcccccCCCCchhhhHHHHH-HHHHHCCCcEeEEeec
Q 021911 217 IFSDVAQP------------DQARILALNASYFLKAGGHFVISIKANCIDSTVPAEAVFQSEV-KKLQQDQFKPFEQVTL 283 (305)
Q Consensus 217 V~~d~~~~------------~~~~~l~~~a~~~LkpGG~lv~s~~~~~i~~~~~~~~v~~~~~-~~l~~~Gf~~~e~~~l 283 (305)
|++|+|.. +..+++. .+.++|+|+|.|++++ |+ .. . ....|.+.+ ..+.+.+.++++....
T Consensus 289 Ii~DPP~~~~~~~~~~~~~~~~~~ll~-~~~~~L~pgG~l~~~~--~~-~~-~-~~~~~~~~i~~~~~~~g~~~~~~~~~ 362 (385)
T 2b78_A 289 IIIDPPSFARNKKEVFSVSKDYHKLIR-QGLEILSENGLIIAST--NA-AN-M-TVSQFKKQIEKGFGKQKHTYLDLQQL 362 (385)
T ss_dssp EEECCCCC-----CCCCHHHHHHHHHH-HHHHTEEEEEEEEEEE--CC-TT-S-CHHHHHHHHHHHHTTCCCEEEEEECC
T ss_pred EEECCCCCCCChhhHHHHHHHHHHHHH-HHHHhcCCCcEEEEEe--CC-Cc-C-CHHHHHHHHHHHHHHcCCcEEEeCCC
Confidence 99999852 2334555 7889999999999997 22 11 1 122333443 3446677776555543
|
| >2fpo_A Methylase YHHF; structural genomics, putative methyltransferase, PSI, protei structure initiative; HET: MSE; 2.05A {Escherichia coli} SCOP: c.66.1.46 | Back alignment and structure |
|---|
Probab=99.41 E-value=3.5e-13 Score=115.53 Aligned_cols=120 Identities=11% Similarity=0.037 Sum_probs=84.0
Q ss_pred CchhhHHHHHHHccccccCCCCCCEEEEEecCCCccHHHHHhhhCCCcEEEEEeCChHHHHHHHHHHHcC--CCeEEEEc
Q 021911 122 NPFRSKLAAAVLGGVDNIWIKPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKR--TNVIPIIE 199 (305)
Q Consensus 122 ~~~~s~l~a~ll~~l~~~~~~~g~~VLDlG~G~G~~t~~la~~~~~~~~V~avD~s~~~~~~l~~~a~~~--~nI~~~~~ 199 (305)
+|....+...++..+.. ..++.+|||+|||+|.++..++... ..+|++||+|+.+++.+.+.++.. +++++++.
T Consensus 35 rp~~~~~~~~l~~~l~~--~~~~~~vLDlgcG~G~~~~~l~~~~--~~~V~~vD~s~~~l~~a~~~~~~~~~~~v~~~~~ 110 (202)
T 2fpo_A 35 RPTTDRVRETLFNWLAP--VIVDAQCLDCFAGSGALGLEALSRY--AAGATLIEMDRAVSQQLIKNLATLKAGNARVVNS 110 (202)
T ss_dssp ---CHHHHHHHHHHHHH--HHTTCEEEETTCTTCHHHHHHHHTT--CSEEEEECSCHHHHHHHHHHHHHTTCCSEEEECS
T ss_pred CCCHHHHHHHHHHHHHh--hcCCCeEEEeCCCcCHHHHHHHhcC--CCEEEEEECCHHHHHHHHHHHHHcCCCcEEEEEC
Confidence 44455555555544331 1267899999999999999877762 348999999997766666665544 48999999
Q ss_pred cCCCCcccccCCCcEeEEEEeCC-C-hhHHHHHHHHHh--ccCCCCcEEEEEE
Q 021911 200 DARHPAKYRMLVGMVDVIFSDVA-Q-PDQARILALNAS--YFLKAGGHFVISI 248 (305)
Q Consensus 200 D~~~~~~~~~~~~~fD~V~~d~~-~-~~~~~~l~~~a~--~~LkpGG~lv~s~ 248 (305)
|+.+..+. ...+||+|++|++ . .+...++. .+. ++|||+|.|++++
T Consensus 111 D~~~~~~~--~~~~fD~V~~~~p~~~~~~~~~l~-~l~~~~~L~pgG~l~i~~ 160 (202)
T 2fpo_A 111 NAMSFLAQ--KGTPHNIVFVDPPFRRGLLEETIN-LLEDNGWLADEALIYVES 160 (202)
T ss_dssp CHHHHHSS--CCCCEEEEEECCSSSTTTHHHHHH-HHHHTTCEEEEEEEEEEE
T ss_pred CHHHHHhh--cCCCCCEEEECCCCCCCcHHHHHH-HHHhcCccCCCcEEEEEE
Confidence 98664321 2468999999998 2 34444554 553 4699999999987
|
| >2r3s_A Uncharacterized protein; methyltransferase domain, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE; 2.15A {Nostoc punctiforme} | Back alignment and structure |
|---|
Probab=99.40 E-value=6.2e-12 Score=115.34 Aligned_cols=147 Identities=16% Similarity=0.142 Sum_probs=102.4
Q ss_pred CCCCEEEEEecCCCccHHHHHhhhCCCcEEEEEeCChHHHHHHHHHHHcC---CCeEEEEccCCCCcccccCCCcEeEEE
Q 021911 142 KPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKR---TNVIPIIEDARHPAKYRMLVGMVDVIF 218 (305)
Q Consensus 142 ~~g~~VLDlG~G~G~~t~~la~~~~~~~~V~avD~s~~~~~~l~~~a~~~---~nI~~~~~D~~~~~~~~~~~~~fD~V~ 218 (305)
.+..+|||+|||+|.++..+++.+ +..+++++|+| ..++.+.+...+. .+|.+++.|+.+.+. ...||+|+
T Consensus 164 ~~~~~vlDvG~G~G~~~~~l~~~~-p~~~~~~~D~~-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~----~~~~D~v~ 237 (335)
T 2r3s_A 164 IEPLKVLDISASHGLFGIAVAQHN-PNAEIFGVDWA-SVLEVAKENARIQGVASRYHTIAGSAFEVDY----GNDYDLVL 237 (335)
T ss_dssp CCCSEEEEETCTTCHHHHHHHHHC-TTCEEEEEECH-HHHHHHHHHHHHHTCGGGEEEEESCTTTSCC----CSCEEEEE
T ss_pred CCCCEEEEECCCcCHHHHHHHHHC-CCCeEEEEecH-HHHHHHHHHHHhcCCCcceEEEecccccCCC----CCCCcEEE
Confidence 677999999999999999999986 56799999999 7776666555432 469999999987531 34599999
Q ss_pred EeCC---C--hhHHHHHHHHHhccCCCCcEEEEEEcccccCCCCchhh-h----------------HHHHHHHHHHCCCc
Q 021911 219 SDVA---Q--PDQARILALNASYFLKAGGHFVISIKANCIDSTVPAEA-V----------------FQSEVKKLQQDQFK 276 (305)
Q Consensus 219 ~d~~---~--~~~~~~l~~~a~~~LkpGG~lv~s~~~~~i~~~~~~~~-v----------------~~~~~~~l~~~Gf~ 276 (305)
+... . ++..+++. ++.+.|||||+|++...........+... . ..+..+.++++||+
T Consensus 238 ~~~~l~~~~~~~~~~~l~-~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~ll~~aGf~ 316 (335)
T 2r3s_A 238 LPNFLHHFDVATCEQLLR-KIKTALAVEGKVIVFDFIPNSDRITPPDAAAFSLVMLATTPNGDAYTFAEYESMFSNAGFS 316 (335)
T ss_dssp EESCGGGSCHHHHHHHHH-HHHHHEEEEEEEEEEECCCCTTSSCSHHHHHHHHHHHHHSSSCCCCCHHHHHHHHHHTTCS
T ss_pred EcchhccCCHHHHHHHHH-HHHHhCCCCcEEEEEeecCCCCcCCchHHHHHHHHHHeeCCCCCcCCHHHHHHHHHHCCCC
Confidence 9544 1 34456776 99999999999999873221111111110 0 11224556889999
Q ss_pred EeEEeecCCCCCceEEEEEEEc
Q 021911 277 PFEQVTLEPFERDHACVVGGYR 298 (305)
Q Consensus 277 ~~e~~~l~p~~~~~~~vv~~~~ 298 (305)
.+++..+.. .+.++++.|+
T Consensus 317 ~~~~~~~~~---~~~~i~~~~~ 335 (335)
T 2r3s_A 317 HSQLHSLPT---TQQQVIVAYK 335 (335)
T ss_dssp EEEEECCTT---SSSEEEEEEC
T ss_pred eeeEEECCC---CceeEEEecC
Confidence 998775533 3466777664
|
| >3gnl_A Uncharacterized protein, DUF633, LMOF2365_1472; structural genomics, PSI-2, protein structure initiative; 1.50A {Listeria monocytogenes str} | Back alignment and structure |
|---|
Probab=99.40 E-value=5.2e-12 Score=111.42 Aligned_cols=143 Identities=10% Similarity=0.028 Sum_probs=106.5
Q ss_pred CCCCCCEEEEEecCCCccHHHHHhhhCCCcEEEEEeCChHHHHHHHHHHHcC---CCeEEEEccCCCCcccccCCCcEeE
Q 021911 140 WIKPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKR---TNVIPIIEDARHPAKYRMLVGMVDV 216 (305)
Q Consensus 140 ~~~~g~~VLDlG~G~G~~t~~la~~~~~~~~V~avD~s~~~~~~l~~~a~~~---~nI~~~~~D~~~~~~~~~~~~~fD~ 216 (305)
.++++.+|||+|||+|..+..++.. ++..+|+|+|+++.++..+.++++.. .+|.+++.|..+.... ...||+
T Consensus 18 ~v~~g~~VlDIGtGsG~l~i~la~~-~~~~~V~avDi~~~al~~A~~N~~~~gl~~~I~v~~gD~l~~~~~---~~~~D~ 93 (244)
T 3gnl_A 18 YITKNERIADIGSDHAYLPCFAVKN-QTASFAIAGEVVDGPFQSAQKQVRSSGLTEQIDVRKGNGLAVIEK---KDAIDT 93 (244)
T ss_dssp TCCSSEEEEEETCSTTHHHHHHHHT-TSEEEEEEEESSHHHHHHHHHHHHHTTCTTTEEEEECSGGGGCCG---GGCCCE
T ss_pred hCCCCCEEEEECCccHHHHHHHHHh-CCCCEEEEEECCHHHHHHHHHHHHHcCCCceEEEEecchhhccCc---cccccE
Confidence 4678899999999999999999987 45668999999998777777776655 3599999998765421 135998
Q ss_pred EE-EeCCChhHHHHHHHHHhccCCCCcEEEEEEcccccCCCCchhhhHHHHHHHHHHCCCcEeEEeecCCCCCceEEEEE
Q 021911 217 IF-SDVAQPDQARILALNASYFLKAGGHFVISIKANCIDSTVPAEAVFQSEVKKLQQDQFKPFEQVTLEPFERDHACVVG 295 (305)
Q Consensus 217 V~-~d~~~~~~~~~l~~~a~~~LkpGG~lv~s~~~~~i~~~~~~~~v~~~~~~~l~~~Gf~~~e~~~l~p~~~~~~~vv~ 295 (305)
|+ +.+--..-.+++. .+...|+++++|+++-. ... ....++|.++||.+.+...+..-.+-|-++++
T Consensus 94 IviagmGg~lI~~IL~-~~~~~L~~~~~lIlq~~-------~~~----~~lr~~L~~~Gf~i~~E~lv~e~~k~Yeii~~ 161 (244)
T 3gnl_A 94 IVIAGMGGTLIRTILE-EGAAKLAGVTKLILQPN-------IAA----WQLREWSEQNNWLITSEAILREDNKVYEIMVL 161 (244)
T ss_dssp EEEEEECHHHHHHHHH-HTGGGGTTCCEEEEEES-------SCH----HHHHHHHHHHTEEEEEEEEEEETTEEEEEEEE
T ss_pred EEEeCCchHHHHHHHH-HHHHHhCCCCEEEEEcC-------CCh----HHHHHHHHHCCCEEEEEEEEEECCEEEEEEEE
Confidence 76 4555555677777 89999999999999861 112 22357888899999876655554455666666
Q ss_pred EEc
Q 021911 296 GYR 298 (305)
Q Consensus 296 ~~~ 298 (305)
.+.
T Consensus 162 ~~~ 164 (244)
T 3gnl_A 162 APS 164 (244)
T ss_dssp EEC
T ss_pred EeC
Confidence 654
|
| >1nv8_A HEMK protein; class I adoMet-dependent methyltransferase; HET: SAM MEQ; 2.20A {Thermotoga maritima} SCOP: c.66.1.30 PDB: 1nv9_A* 1vq1_A* 1sg9_A* | Back alignment and structure |
|---|
Probab=99.40 E-value=1.7e-12 Score=117.34 Aligned_cols=117 Identities=15% Similarity=0.152 Sum_probs=88.0
Q ss_pred cCchhhHHHHHHHccccccCCCCCCEEEEEecCCCccHHHHHhhhCCCcEEEEEeCChHHHHHHHHHHHcC--C-CeEEE
Q 021911 121 WNPFRSKLAAAVLGGVDNIWIKPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKR--T-NVIPI 197 (305)
Q Consensus 121 ~~~~~s~l~a~ll~~l~~~~~~~g~~VLDlG~G~G~~t~~la~~~~~~~~V~avD~s~~~~~~l~~~a~~~--~-nI~~~ 197 (305)
..|....++..++..+. ..++.+|||+|||+|.++..++.. +..+|+++|+|+.++..+.++++.. . ++.++
T Consensus 104 pr~~te~lv~~~l~~~~---~~~~~~vLDlG~GsG~~~~~la~~--~~~~v~~vDis~~al~~A~~n~~~~~l~~~v~~~ 178 (284)
T 1nv8_A 104 PRPETEELVELALELIR---KYGIKTVADIGTGSGAIGVSVAKF--SDAIVFATDVSSKAVEIARKNAERHGVSDRFFVR 178 (284)
T ss_dssp CCTTHHHHHHHHHHHHH---HHTCCEEEEESCTTSHHHHHHHHH--SSCEEEEEESCHHHHHHHHHHHHHTTCTTSEEEE
T ss_pred cChhHHHHHHHHHHHhc---ccCCCEEEEEeCchhHHHHHHHHC--CCCEEEEEECCHHHHHHHHHHHHHcCCCCceEEE
Confidence 34445667776664332 236689999999999999999998 6779999999997766666665544 2 49999
Q ss_pred EccCCCCcccccCCCcE---eEEEEeCCChh----------------------HHHHHHHHHh-ccCCCCcEEEEEE
Q 021911 198 IEDARHPAKYRMLVGMV---DVIFSDVAQPD----------------------QARILALNAS-YFLKAGGHFVISI 248 (305)
Q Consensus 198 ~~D~~~~~~~~~~~~~f---D~V~~d~~~~~----------------------~~~~l~~~a~-~~LkpGG~lv~s~ 248 (305)
+.|+.+... .+| |+|++|+|... ...++. ++. +.|+|||+|++.+
T Consensus 179 ~~D~~~~~~-----~~f~~~D~IvsnPPyi~~~~~l~~~v~~ep~~al~~~~dgl~~~~-~i~~~~l~pgG~l~~e~ 249 (284)
T 1nv8_A 179 KGEFLEPFK-----EKFASIEMILSNPPYVKSSAHLPKDVLFEPPEALFGGEDGLDFYR-EFFGRYDTSGKIVLMEI 249 (284)
T ss_dssp ESSTTGGGG-----GGTTTCCEEEECCCCBCGGGSCTTSCCCSCHHHHBCTTTSCHHHH-HHHHHCCCTTCEEEEEC
T ss_pred ECcchhhcc-----cccCCCCEEEEcCCCCCcccccChhhccCcHHHhcCCCcHHHHHH-HHHHhcCCCCCEEEEEE
Confidence 999987432 467 99999987321 114565 888 9999999999976
|
| >1sui_A Caffeoyl-COA O-methyltransferase; rossmann fold, protein-cofactor-substrate complex; HET: SAH FRE; 2.70A {Medicago sativa} SCOP: c.66.1.1 PDB: 1sus_A* | Back alignment and structure |
|---|
Probab=99.39 E-value=6e-13 Score=117.87 Aligned_cols=107 Identities=14% Similarity=0.111 Sum_probs=85.0
Q ss_pred CCCCCEEEEEecCCCccHHHHHhhhCCCcEEEEEeCChHHHHHHHHHHHcC---CCeEEEEccCCCCccccc----CCCc
Q 021911 141 IKPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKR---TNVIPIIEDARHPAKYRM----LVGM 213 (305)
Q Consensus 141 ~~~g~~VLDlG~G~G~~t~~la~~~~~~~~V~avD~s~~~~~~l~~~a~~~---~nI~~~~~D~~~~~~~~~----~~~~ 213 (305)
..+..+|||+|||+|..+..+|+.+.+.++|+++|+|+.++..+.+..++. ++|++++.|+.+..+... ...+
T Consensus 77 ~~~~~~VLeiG~G~G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~i~~~~gda~~~l~~l~~~~~~~~~ 156 (247)
T 1sui_A 77 LINAKNTMEIGVYTGYSLLATALAIPEDGKILAMDINKENYELGLPVIKKAGVDHKIDFREGPALPVLDEMIKDEKNHGS 156 (247)
T ss_dssp HTTCCEEEEECCGGGHHHHHHHHHSCTTCEEEEEESCCHHHHHHHHHHHHTTCGGGEEEEESCHHHHHHHHHHSGGGTTC
T ss_pred hhCcCEEEEeCCCcCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCCeEEEECCHHHHHHHHHhccCCCCC
Confidence 345689999999999999999998755789999999996666655555443 479999999865422100 1468
Q ss_pred EeEEEEeCCChhHHHHHHHHHhccCCCCcEEEEEE
Q 021911 214 VDVIFSDVAQPDQARILALNASYFLKAGGHFVISI 248 (305)
Q Consensus 214 fD~V~~d~~~~~~~~~l~~~a~~~LkpGG~lv~s~ 248 (305)
||+||+|....+....+. ++.++|||||.|++..
T Consensus 157 fD~V~~d~~~~~~~~~l~-~~~~~LkpGG~lv~d~ 190 (247)
T 1sui_A 157 YDFIFVDADKDNYLNYHK-RLIDLVKVGGVIGYDN 190 (247)
T ss_dssp BSEEEECSCSTTHHHHHH-HHHHHBCTTCCEEEEC
T ss_pred EEEEEEcCchHHHHHHHH-HHHHhCCCCeEEEEec
Confidence 999999998888788887 8999999999999864
|
| >1uwv_A 23S rRNA (uracil-5-)-methyltransferase RUMA; RNA modification, iron-sulfur cluster, RNA processing; 1.95A {Escherichia coli} SCOP: b.40.4.12 c.66.1.40 PDB: 2bh2_A* | Back alignment and structure |
|---|
Probab=99.39 E-value=8.3e-12 Score=119.30 Aligned_cols=153 Identities=18% Similarity=0.105 Sum_probs=105.1
Q ss_pred HHHHHHHccccccCCCCCCEEEEEecCCCccHHHHHhhhCCCcEEEEEeCChHHHHHHHHHHHcC--CCeEEEEccCCCC
Q 021911 127 KLAAAVLGGVDNIWIKPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKR--TNVIPIIEDARHP 204 (305)
Q Consensus 127 ~l~a~ll~~l~~~~~~~g~~VLDlG~G~G~~t~~la~~~~~~~~V~avD~s~~~~~~l~~~a~~~--~nI~~~~~D~~~~ 204 (305)
.+...++..+ .+.++.+|||+|||+|.++..+|+. ..+|+++|+|+.+++.+.++++.. +|+.+++.|+.+.
T Consensus 273 ~l~~~~~~~l---~~~~~~~VLDlgcG~G~~~~~la~~---~~~V~gvD~s~~al~~A~~n~~~~~~~~v~f~~~d~~~~ 346 (433)
T 1uwv_A 273 KMVARALEWL---DVQPEDRVLDLFCGMGNFTLPLATQ---AASVVGVEGVPALVEKGQQNARLNGLQNVTFYHENLEED 346 (433)
T ss_dssp HHHHHHHHHH---TCCTTCEEEEESCTTTTTHHHHHTT---SSEEEEEESCHHHHHHHHHHHHHTTCCSEEEEECCTTSC
T ss_pred HHHHHHHHhh---cCCCCCEEEECCCCCCHHHHHHHhh---CCEEEEEeCCHHHHHHHHHHHHHcCCCceEEEECCHHHH
Confidence 3444444322 4567889999999999999999987 358999999997777777766554 5899999999774
Q ss_pred ccc-ccCCCcEeEEEEeCCChhHHHHHHHHHhccCCCCcEEEEEEcccccCCCCchhhhHHHHHHHHHHCCCcEeEEeec
Q 021911 205 AKY-RMLVGMVDVIFSDVAQPDQARILALNASYFLKAGGHFVISIKANCIDSTVPAEAVFQSEVKKLQQDQFKPFEQVTL 283 (305)
Q Consensus 205 ~~~-~~~~~~fD~V~~d~~~~~~~~~l~~~a~~~LkpGG~lv~s~~~~~i~~~~~~~~v~~~~~~~l~~~Gf~~~e~~~l 283 (305)
... .....+||+|++|+|.....+++. .+. .++|++.++++. ++ ..++.....|.+.||++.+...+
T Consensus 347 l~~~~~~~~~fD~Vv~dPPr~g~~~~~~-~l~-~~~p~~ivyvsc---------~p-~tlard~~~l~~~Gy~~~~~~~~ 414 (433)
T 1uwv_A 347 VTKQPWAKNGFDKVLLDPARAGAAGVMQ-QII-KLEPIRIVYVSC---------NP-ATLARDSEALLKAGYTIARLAML 414 (433)
T ss_dssp CSSSGGGTTCCSEEEECCCTTCCHHHHH-HHH-HHCCSEEEEEES---------CH-HHHHHHHHHHHHTTCEEEEEEEE
T ss_pred hhhhhhhcCCCCEEEECCCCccHHHHHH-HHH-hcCCCeEEEEEC---------Ch-HHHHhhHHHHHHCCcEEEEEEEe
Confidence 321 122458999999999543334443 333 478987777763 22 23456677788889999886666
Q ss_pred CCCCC-ceEEEEEEE
Q 021911 284 EPFER-DHACVVGGY 297 (305)
Q Consensus 284 ~p~~~-~~~~vv~~~ 297 (305)
+.|.. .|.=.|+..
T Consensus 415 d~Fp~t~HvE~v~ll 429 (433)
T 1uwv_A 415 DMFPHTGHLESMVLF 429 (433)
T ss_dssp CCSTTSSCCEEEEEE
T ss_pred ccCCCCCeEEEEEEE
Confidence 55543 344344444
|
| >3c3y_A Pfomt, O-methyltransferase; plant secondary metabolism; HET: SAH; 1.37A {Mesembryanthemum crystallinum} | Back alignment and structure |
|---|
Probab=99.39 E-value=8.1e-13 Score=116.16 Aligned_cols=107 Identities=16% Similarity=0.200 Sum_probs=85.6
Q ss_pred CCCCCEEEEEecCCCccHHHHHhhhCCCcEEEEEeCChHHHHHHHHHHHcC---CCeEEEEccCCCCccccc----CCCc
Q 021911 141 IKPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKR---TNVIPIIEDARHPAKYRM----LVGM 213 (305)
Q Consensus 141 ~~~g~~VLDlG~G~G~~t~~la~~~~~~~~V~avD~s~~~~~~l~~~a~~~---~nI~~~~~D~~~~~~~~~----~~~~ 213 (305)
..+..+|||+|||+|..+.++++.+.+.++|+++|+|+.+++.+.+..++. ++|++++.|+.+..+... ...+
T Consensus 68 ~~~~~~VLeiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~g~~~~i~~~~gda~~~l~~l~~~~~~~~~ 147 (237)
T 3c3y_A 68 LVNAKKTIEVGVFTGYSLLLTALSIPDDGKITAIDFDREAYEIGLPFIRKAGVEHKINFIESDAMLALDNLLQGQESEGS 147 (237)
T ss_dssp HTTCCEEEEECCTTSHHHHHHHHHSCTTCEEEEEESCHHHHHHHHHHHHHTTCGGGEEEEESCHHHHHHHHHHSTTCTTC
T ss_pred hhCCCEEEEeCCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHHHHhccCCCCC
Confidence 345689999999999999999998865789999999997766665555443 369999999865422100 1468
Q ss_pred EeEEEEeCCChhHHHHHHHHHhccCCCCcEEEEEE
Q 021911 214 VDVIFSDVAQPDQARILALNASYFLKAGGHFVISI 248 (305)
Q Consensus 214 fD~V~~d~~~~~~~~~l~~~a~~~LkpGG~lv~s~ 248 (305)
||+||+|....+....+. ++.++|||||.|++..
T Consensus 148 fD~I~~d~~~~~~~~~l~-~~~~~L~pGG~lv~d~ 181 (237)
T 3c3y_A 148 YDFGFVDADKPNYIKYHE-RLMKLVKVGGIVAYDN 181 (237)
T ss_dssp EEEEEECSCGGGHHHHHH-HHHHHEEEEEEEEEEC
T ss_pred cCEEEECCchHHHHHHHH-HHHHhcCCCeEEEEec
Confidence 999999998888888887 9999999999999875
|
| >2yqz_A Hypothetical protein TTHA0223; RNA methyltransferase, SAM, structural genomics, NPPSFA; HET: SAM; 1.80A {Thermus thermophilus} PDB: 2yr0_A | Back alignment and structure |
|---|
Probab=99.39 E-value=1.2e-12 Score=115.46 Aligned_cols=102 Identities=19% Similarity=0.103 Sum_probs=81.0
Q ss_pred CCCCCCEEEEEecCCCccHHHHHhhhCCCcEEEEEeCChHHHHHHHHHHHc-CCCeEEEEccCCCCcccccCCCcEeEEE
Q 021911 140 WIKPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKK-RTNVIPIIEDARHPAKYRMLVGMVDVIF 218 (305)
Q Consensus 140 ~~~~g~~VLDlG~G~G~~t~~la~~~~~~~~V~avD~s~~~~~~l~~~a~~-~~nI~~~~~D~~~~~~~~~~~~~fD~V~ 218 (305)
.+.++.+|||+|||+|.++..+++. ..+|+++|+|+.++..+.+.+.. .+++.+++.|+.+.+ ....+||+|+
T Consensus 36 ~~~~~~~vLDiG~G~G~~~~~l~~~---~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~d~~~~~---~~~~~fD~v~ 109 (263)
T 2yqz_A 36 PKGEEPVFLELGVGTGRIALPLIAR---GYRYIALDADAAMLEVFRQKIAGVDRKVQVVQADARAIP---LPDESVHGVI 109 (263)
T ss_dssp CSSSCCEEEEETCTTSTTHHHHHTT---TCEEEEEESCHHHHHHHHHHTTTSCTTEEEEESCTTSCC---SCTTCEEEEE
T ss_pred CCCCCCEEEEeCCcCCHHHHHHHHC---CCEEEEEECCHHHHHHHHHHhhccCCceEEEEcccccCC---CCCCCeeEEE
Confidence 4567899999999999999999987 35899999999555554444411 268999999997654 2356899999
Q ss_pred EeCC---ChhHHHHHHHHHhccCCCCcEEEEEE
Q 021911 219 SDVA---QPDQARILALNASYFLKAGGHFVISI 248 (305)
Q Consensus 219 ~d~~---~~~~~~~l~~~a~~~LkpGG~lv~s~ 248 (305)
+... .++...++. ++.++|||||+|+++.
T Consensus 110 ~~~~l~~~~~~~~~l~-~~~~~L~pgG~l~~~~ 141 (263)
T 2yqz_A 110 VVHLWHLVPDWPKVLA-EAIRVLKPGGALLEGW 141 (263)
T ss_dssp EESCGGGCTTHHHHHH-HHHHHEEEEEEEEEEE
T ss_pred ECCchhhcCCHHHHHH-HHHHHCCCCcEEEEEe
Confidence 9766 446777777 9999999999999884
|
| >3uwp_A Histone-lysine N-methyltransferase, H3 lysine-79; epigenetics, tubercidin, structu genomics, structural genomics consortium, SGC; HET: 5ID; 2.05A {Homo sapiens} PDB: 4eqz_A* 3sx0_A* 4er0_A* 4er7_A* 1nw3_A* 4er6_A* 4er5_A* 3qow_A* 3qox_A* 4ek9_A* 4ekg_A* 4eki_A* 4er3_A* 3sr4_A* | Back alignment and structure |
|---|
Probab=99.38 E-value=1.2e-12 Score=123.18 Aligned_cols=114 Identities=20% Similarity=0.177 Sum_probs=85.0
Q ss_pred ccccCCCCCCEEEEEecCCCccHHHHHhhhCCCcEEEEEeCChHHHHHHHHHHH----------c-CCCeEEEEccCCCC
Q 021911 136 VDNIWIKPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAK----------K-RTNVIPIIEDARHP 204 (305)
Q Consensus 136 l~~~~~~~g~~VLDlG~G~G~~t~~la~~~~~~~~V~avD~s~~~~~~l~~~a~----------~-~~nI~~~~~D~~~~ 204 (305)
|+.+.+.++.+|||||||+|..+..+|...+ ..+|++||+|+.++.-+.++++ . ..+|.++++|+.+.
T Consensus 166 l~~l~l~~gd~VLDLGCGtG~l~l~lA~~~g-~~kVvGIDiS~~~lelAr~n~e~frkr~~~~Gl~~~rVefi~GD~~~l 244 (438)
T 3uwp_A 166 IDEIKMTDDDLFVDLGSGVGQVVLQVAAATN-CKHHYGVEKADIPAKYAETMDREFRKWMKWYGKKHAEYTLERGDFLSE 244 (438)
T ss_dssp HHHHCCCTTCEEEEESCTTSHHHHHHHHHCC-CSEEEEEECCHHHHHHHHHHHHHHHHHHHHHTBCCCEEEEEECCTTSH
T ss_pred HHhcCCCCCCEEEEeCCCCCHHHHHHHHHCC-CCEEEEEeCCHHHHHHHHHHHHHHHHHHHHhCCCCCCeEEEECcccCC
Confidence 3444688999999999999999999998753 3469999999855443333221 1 15799999999886
Q ss_pred cccccCCCcEeEEEEeCC--ChhHHHHHHHHHhccCCCCcEEEEEEcccc
Q 021911 205 AKYRMLVGMVDVIFSDVA--QPDQARILALNASYFLKAGGHFVISIKANC 252 (305)
Q Consensus 205 ~~~~~~~~~fD~V~~d~~--~~~~~~~l~~~a~~~LkpGG~lv~s~~~~~ 252 (305)
+... ....||+|+++.+ .++....|. ++++.|||||+|+++.+.+.
T Consensus 245 p~~d-~~~~aDVVf~Nn~~F~pdl~~aL~-Ei~RvLKPGGrIVssE~f~p 292 (438)
T 3uwp_A 245 EWRE-RIANTSVIFVNNFAFGPEVDHQLK-ERFANMKEGGRIVSSKPFAP 292 (438)
T ss_dssp HHHH-HHHTCSEEEECCTTCCHHHHHHHH-HHHTTSCTTCEEEESSCSSC
T ss_pred cccc-ccCCccEEEEcccccCchHHHHHH-HHHHcCCCCcEEEEeecccC
Confidence 5321 1247999999876 567777787 88999999999998764433
|
| >3mcz_A O-methyltransferase; adomet_mtases, S-adenosylmethionine-dependent methyltransfer structural genomics, PSI-2; HET: MSE; 1.90A {Burkholderia thailandensis} | Back alignment and structure |
|---|
Probab=99.38 E-value=1.7e-11 Score=113.46 Aligned_cols=153 Identities=14% Similarity=0.133 Sum_probs=103.5
Q ss_pred ccccCCCC-CCEEEEEecCCCccHHHHHhhhCCCcEEEEEeCChHHHHHHHHHHHcC---CCeEEEEccCCCCcccccCC
Q 021911 136 VDNIWIKP-GARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKR---TNVIPIIEDARHPAKYRMLV 211 (305)
Q Consensus 136 l~~~~~~~-g~~VLDlG~G~G~~t~~la~~~~~~~~V~avD~s~~~~~~l~~~a~~~---~nI~~~~~D~~~~~~~~~~~ 211 (305)
++.+...+ ..+|||+|||+|.++..+++.+ +..+++++|+ +..+..+.+.+... .+|+++..|+.+.+.. .+
T Consensus 171 l~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~-p~~~~~~~D~-~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~--~~ 246 (352)
T 3mcz_A 171 VSELGVFARARTVIDLAGGHGTYLAQVLRRH-PQLTGQIWDL-PTTRDAARKTIHAHDLGGRVEFFEKNLLDARNF--EG 246 (352)
T ss_dssp HHTCGGGTTCCEEEEETCTTCHHHHHHHHHC-TTCEEEEEEC-GGGHHHHHHHHHHTTCGGGEEEEECCTTCGGGG--TT
T ss_pred HHhCCCcCCCCEEEEeCCCcCHHHHHHHHhC-CCCeEEEEEC-HHHHHHHHHHHHhcCCCCceEEEeCCcccCccc--CC
Confidence 34444556 7899999999999999999986 5679999999 65555554444433 4699999999876421 24
Q ss_pred CcEeEEEEeCCC---h--hHHHHHHHHHhccCCCCcEEEEEEcccccCCCCchhhh-----------------HHHHHHH
Q 021911 212 GMVDVIFSDVAQ---P--DQARILALNASYFLKAGGHFVISIKANCIDSTVPAEAV-----------------FQSEVKK 269 (305)
Q Consensus 212 ~~fD~V~~d~~~---~--~~~~~l~~~a~~~LkpGG~lv~s~~~~~i~~~~~~~~v-----------------~~~~~~~ 269 (305)
..||+|++.... + +...++. ++++.|||||+|++...........+.... ..+..+.
T Consensus 247 ~~~D~v~~~~vlh~~~~~~~~~~l~-~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~l 325 (352)
T 3mcz_A 247 GAADVVMLNDCLHYFDAREAREVIG-HAAGLVKPGGALLILTMTMNDDRVTPALSADFSLHMMVNTNHGELHPTPWIAGV 325 (352)
T ss_dssp CCEEEEEEESCGGGSCHHHHHHHHH-HHHHTEEEEEEEEEEEECCCTTSSSSHHHHHHHHHHHHHSTTCCCCCHHHHHHH
T ss_pred CCccEEEEecccccCCHHHHHHHHH-HHHHHcCCCCEEEEEEeccCCCCCCCchHHHhhHHHHhhCCCCCcCCHHHHHHH
Confidence 579999986552 2 3366676 999999999999998632111111111100 1112356
Q ss_pred HHHCCCcEeEEeecCCCCCceEEEEEEEc
Q 021911 270 LQQDQFKPFEQVTLEPFERDHACVVGGYR 298 (305)
Q Consensus 270 l~~~Gf~~~e~~~l~p~~~~~~~vv~~~~ 298 (305)
|+++||++++.. . ..+.+++++++
T Consensus 326 l~~aGf~~~~~~-~----g~~~l~~a~kp 349 (352)
T 3mcz_A 326 VRDAGLAVGERS-I----GRYTLLIGQRS 349 (352)
T ss_dssp HHHTTCEEEEEE-E----TTEEEEEEECC
T ss_pred HHHCCCceeeec-c----CceEEEEEecC
Confidence 689999998842 2 34778888765
|
| >1qzz_A RDMB, aclacinomycin-10-hydroxylase; anthracycline, methyltransferase, polyketide, tailoring enzymes, structural proteomics in E spine; HET: SAM; 2.10A {Streptomyces purpurascens} SCOP: a.4.5.29 c.66.1.12 PDB: 1r00_A* 1xds_A* 1xdu_A* | Back alignment and structure |
|---|
Probab=99.38 E-value=1.6e-11 Score=114.50 Aligned_cols=154 Identities=14% Similarity=0.045 Sum_probs=103.3
Q ss_pred CCCCCCEEEEEecCCCccHHHHHhhhCCCcEEEEEeCChHHHHHHHHHHHcC---CCeEEEEccCCCCcccccCCCcEeE
Q 021911 140 WIKPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKR---TNVIPIIEDARHPAKYRMLVGMVDV 216 (305)
Q Consensus 140 ~~~~g~~VLDlG~G~G~~t~~la~~~~~~~~V~avD~s~~~~~~l~~~a~~~---~nI~~~~~D~~~~~~~~~~~~~fD~ 216 (305)
.+.+..+|||+|||+|.++..+++.. +..+++++|+ +..+..+.+.+... .+|++++.|+.+.. +..||+
T Consensus 179 ~~~~~~~vlDvG~G~G~~~~~l~~~~-~~~~~~~~D~-~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~-----~~~~D~ 251 (374)
T 1qzz_A 179 DWSAVRHVLDVGGGNGGMLAAIALRA-PHLRGTLVEL-AGPAERARRRFADAGLADRVTVAEGDFFKPL-----PVTADV 251 (374)
T ss_dssp CCTTCCEEEEETCTTSHHHHHHHHHC-TTCEEEEEEC-HHHHHHHHHHHHHTTCTTTEEEEECCTTSCC-----SCCEEE
T ss_pred CCCCCCEEEEECCCcCHHHHHHHHHC-CCCEEEEEeC-HHHHHHHHHHHHhcCCCCceEEEeCCCCCcC-----CCCCCE
Confidence 45678999999999999999999986 5679999999 86655555554433 47999999997532 235999
Q ss_pred EEEeCC---Chh--HHHHHHHHHhccCCCCcEEEEEEcccccCCCCchh-h----------------hHHHHHHHHHHCC
Q 021911 217 IFSDVA---QPD--QARILALNASYFLKAGGHFVISIKANCIDSTVPAE-A----------------VFQSEVKKLQQDQ 274 (305)
Q Consensus 217 V~~d~~---~~~--~~~~l~~~a~~~LkpGG~lv~s~~~~~i~~~~~~~-~----------------v~~~~~~~l~~~G 274 (305)
|++... .++ ...++. ++.++|||||+|++.............. . -..+..+.|+++|
T Consensus 252 v~~~~vl~~~~~~~~~~~l~-~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~aG 330 (374)
T 1qzz_A 252 VLLSFVLLNWSDEDALTILR-GCVRALEPGGRLLVLDRADVEGDGADRFFSTLLDLRMLTFMGGRVRTRDEVVDLAGSAG 330 (374)
T ss_dssp EEEESCGGGSCHHHHHHHHH-HHHHHEEEEEEEEEEECCH-------HHHHHHHHHHHHHHHSCCCCCHHHHHHHHHTTT
T ss_pred EEEeccccCCCHHHHHHHHH-HHHHhcCCCcEEEEEechhhcCCCCCcchhhhcchHHHHhCCCcCCCHHHHHHHHHHCC
Confidence 998665 222 346676 9999999999999987300111111000 0 0111235568899
Q ss_pred CcEeEEeecCCCC--CceEEEEEEEcCCC
Q 021911 275 FKPFEQVTLEPFE--RDHACVVGGYRMPK 301 (305)
Q Consensus 275 f~~~e~~~l~p~~--~~~~~vv~~~~~~~ 301 (305)
|+++++..+..+. ..+.+++++++.+.
T Consensus 331 f~~~~~~~~~~~~~~~~~~~i~~~~~~~~ 359 (374)
T 1qzz_A 331 LALASERTSGSTTLPFDFSILEFTAVSEE 359 (374)
T ss_dssp EEEEEEEEECCSSCSSCEEEEEEEECC--
T ss_pred CceEEEEECCCCcccCCcEEEEEEECccc
Confidence 9999887765442 34478888876543
|
| >2zfu_A Nucleomethylin, cerebral protein 1; nucleolar protein, SAM-binding protein, protein structure, N phosphoprotein, nuclear protein; HET: SAH; 2.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.38 E-value=4.4e-12 Score=108.94 Aligned_cols=128 Identities=13% Similarity=0.090 Sum_probs=92.9
Q ss_pred CCCCCEEEEEecCCCccHHHHHhhhCCCcEEEEEeCChHHHHHHHHHHHcCCCeEEEEccCCCCcccccCCCcEeEEEEe
Q 021911 141 IKPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKRTNVIPIIEDARHPAKYRMLVGMVDVIFSD 220 (305)
Q Consensus 141 ~~~g~~VLDlG~G~G~~t~~la~~~~~~~~V~avD~s~~~~~~l~~~a~~~~nI~~~~~D~~~~~~~~~~~~~fD~V~~d 220 (305)
..++.+|||+|||+|.++..++ .+|+++|+|+. ++.+++.|+.+.+ ....+||+|++.
T Consensus 65 ~~~~~~vLDiG~G~G~~~~~l~------~~v~~~D~s~~-------------~~~~~~~d~~~~~---~~~~~fD~v~~~ 122 (215)
T 2zfu_A 65 RPASLVVADFGCGDCRLASSIR------NPVHCFDLASL-------------DPRVTVCDMAQVP---LEDESVDVAVFC 122 (215)
T ss_dssp SCTTSCEEEETCTTCHHHHHCC------SCEEEEESSCS-------------STTEEESCTTSCS---CCTTCEEEEEEE
T ss_pred cCCCCeEEEECCcCCHHHHHhh------ccEEEEeCCCC-------------CceEEEeccccCC---CCCCCEeEEEEe
Confidence 4577899999999999888773 47999999993 6778899987753 235689999987
Q ss_pred CC--ChhHHHHHHHHHhccCCCCcEEEEEEcccccCCCCchhhhHHHHHHHHHHCCCcEeEEeecCCCCCceEEEEEEEc
Q 021911 221 VA--QPDQARILALNASYFLKAGGHFVISIKANCIDSTVPAEAVFQSEVKKLQQDQFKPFEQVTLEPFERDHACVVGGYR 298 (305)
Q Consensus 221 ~~--~~~~~~~l~~~a~~~LkpGG~lv~s~~~~~i~~~~~~~~v~~~~~~~l~~~Gf~~~e~~~l~p~~~~~~~vv~~~~ 298 (305)
.. .++...++. ++.++|||||+|++++...... . .....+.|+++||++++...... .++++++++.
T Consensus 123 ~~l~~~~~~~~l~-~~~~~L~~gG~l~i~~~~~~~~---~----~~~~~~~l~~~Gf~~~~~~~~~~---~~~~~~~~k~ 191 (215)
T 2zfu_A 123 LSLMGTNIRDFLE-EANRVLKPGGLLKVAEVSSRFE---D----VRTFLRAVTKLGFKIVSKDLTNS---HFFLFDFQKT 191 (215)
T ss_dssp SCCCSSCHHHHHH-HHHHHEEEEEEEEEEECGGGCS---C----HHHHHHHHHHTTEEEEEEECCST---TCEEEEEEEC
T ss_pred hhccccCHHHHHH-HHHHhCCCCeEEEEEEcCCCCC---C----HHHHHHHHHHCCCEEEEEecCCC---eEEEEEEEec
Confidence 65 356677776 9999999999999987321111 1 12234667889999887543322 3677778776
Q ss_pred CCC
Q 021911 299 MPK 301 (305)
Q Consensus 299 ~~~ 301 (305)
..+
T Consensus 192 ~~~ 194 (215)
T 2zfu_A 192 GPP 194 (215)
T ss_dssp SSC
T ss_pred Ccc
Confidence 544
|
| >2hnk_A SAM-dependent O-methyltransferase; modified rossman fold; HET: SAH; 2.30A {Leptospira interrogans} | Back alignment and structure |
|---|
Probab=99.37 E-value=5.9e-12 Score=110.33 Aligned_cols=108 Identities=14% Similarity=0.191 Sum_probs=84.4
Q ss_pred CCCCCCEEEEEecCCCccHHHHHhhhCCCcEEEEEeCChHHHHHHHHHHHcC---CCeEEEEccCCCCcc-cc-------
Q 021911 140 WIKPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKR---TNVIPIIEDARHPAK-YR------- 208 (305)
Q Consensus 140 ~~~~g~~VLDlG~G~G~~t~~la~~~~~~~~V~avD~s~~~~~~l~~~a~~~---~nI~~~~~D~~~~~~-~~------- 208 (305)
...++.+|||+|||+|..+..+++.+.+.++|+++|+++..++.+.+.++.. .+|.+++.|+.+..+ ..
T Consensus 57 ~~~~~~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~~~~~~~~~~~~~ 136 (239)
T 2hnk_A 57 KISGAKRIIEIGTFTGYSSLCFASALPEDGKILCCDVSEEWTNVARKYWKENGLENKIFLKLGSALETLQVLIDSKSAPS 136 (239)
T ss_dssp HHHTCSEEEEECCTTCHHHHHHHHHSCTTCEEEEEESCHHHHHHHHHHHHHTTCGGGEEEEESCHHHHHHHHHHCSSCCG
T ss_pred HhhCcCEEEEEeCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCCEEEEECCHHHHHHHHHhhccccc
Confidence 3457789999999999999999998754679999999996666655555443 349999999865322 10
Q ss_pred ----cC-C-CcEeEEEEeCCChhHHHHHHHHHhccCCCCcEEEEEE
Q 021911 209 ----ML-V-GMVDVIFSDVAQPDQARILALNASYFLKAGGHFVISI 248 (305)
Q Consensus 209 ----~~-~-~~fD~V~~d~~~~~~~~~l~~~a~~~LkpGG~lv~s~ 248 (305)
+. . .+||+|+++...+.....+. ++.++|||||+|++..
T Consensus 137 ~~~~f~~~~~~fD~I~~~~~~~~~~~~l~-~~~~~L~pgG~lv~~~ 181 (239)
T 2hnk_A 137 WASDFAFGPSSIDLFFLDADKENYPNYYP-LILKLLKPGGLLIADN 181 (239)
T ss_dssp GGTTTCCSTTCEEEEEECSCGGGHHHHHH-HHHHHEEEEEEEEEEC
T ss_pred ccccccCCCCCcCEEEEeCCHHHHHHHHH-HHHHHcCCCeEEEEEc
Confidence 01 1 68999999988777777777 9999999999999975
|
| >2avd_A Catechol-O-methyltransferase; structural genomics, structural genomics consortium, SGC; HET: SAM; 1.70A {Homo sapiens} SCOP: c.66.1.1 | Back alignment and structure |
|---|
Probab=99.37 E-value=1.2e-12 Score=113.49 Aligned_cols=107 Identities=14% Similarity=0.166 Sum_probs=85.2
Q ss_pred CCCCCEEEEEecCCCccHHHHHhhhCCCcEEEEEeCChHHHHHHHHHHHcC---CCeEEEEccCCCCccccc-C--CCcE
Q 021911 141 IKPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKR---TNVIPIIEDARHPAKYRM-L--VGMV 214 (305)
Q Consensus 141 ~~~g~~VLDlG~G~G~~t~~la~~~~~~~~V~avD~s~~~~~~l~~~a~~~---~nI~~~~~D~~~~~~~~~-~--~~~f 214 (305)
..++.+|||+|||+|..+..+++.+.+.++|+++|+|+.++..+.+.++.. .+|.+++.|+.+...... . ..+|
T Consensus 67 ~~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~~~~~~~~~~~~~~ 146 (229)
T 2avd_A 67 LIQAKKALDLGTFTGYSALALALALPADGRVVTCEVDAQPPELGRPLWRQAEAEHKIDLRLKPALETLDELLAAGEAGTF 146 (229)
T ss_dssp HTTCCEEEEECCTTSHHHHHHHTTSCTTCEEEEEESCSHHHHHHHHHHHHTTCTTTEEEEESCHHHHHHHHHHTTCTTCE
T ss_pred hcCCCEEEEEcCCccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHCCCCCeEEEEEcCHHHHHHHHHhcCCCCCc
Confidence 456789999999999999999998755679999999997766666555443 589999999865422100 0 1689
Q ss_pred eEEEEeCCChhHHHHHHHHHhccCCCCcEEEEEE
Q 021911 215 DVIFSDVAQPDQARILALNASYFLKAGGHFVISI 248 (305)
Q Consensus 215 D~V~~d~~~~~~~~~l~~~a~~~LkpGG~lv~s~ 248 (305)
|+|++|.+.......+. ++.++|+|||.|++..
T Consensus 147 D~v~~d~~~~~~~~~l~-~~~~~L~pgG~lv~~~ 179 (229)
T 2avd_A 147 DVAVVDADKENCSAYYE-RCLQLLRPGGILAVLR 179 (229)
T ss_dssp EEEEECSCSTTHHHHHH-HHHHHEEEEEEEEEEC
T ss_pred cEEEECCCHHHHHHHHH-HHHHHcCCCeEEEEEC
Confidence 99999999887788887 9999999999999864
|
| >2p8j_A S-adenosylmethionine-dependent methyltransferase; NP_349143.1; HET: PGE GOL; 2.00A {Clostridium acetobutylicum} | Back alignment and structure |
|---|
Probab=99.37 E-value=3.8e-12 Score=108.54 Aligned_cols=104 Identities=16% Similarity=0.105 Sum_probs=78.7
Q ss_pred CCCCCCEEEEEecCCCccHHHHHhhhCCCcEEEEEeCChHHHHHHHHHHHcC-CCeEEEEccCCCCcccccCCCcEeEEE
Q 021911 140 WIKPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKR-TNVIPIIEDARHPAKYRMLVGMVDVIF 218 (305)
Q Consensus 140 ~~~~g~~VLDlG~G~G~~t~~la~~~~~~~~V~avD~s~~~~~~l~~~a~~~-~nI~~~~~D~~~~~~~~~~~~~fD~V~ 218 (305)
...++.+|||+|||+|..+..++.. ...+|+++|+|+.+++.+.+.+... .++.+++.|+.+.+ ....+||+|+
T Consensus 20 ~~~~~~~vLDiGcG~G~~~~~~~~~--~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~d~~~~~---~~~~~fD~v~ 94 (209)
T 2p8j_A 20 ESNLDKTVLDCGAGGDLPPLSIFVE--DGYKTYGIEISDLQLKKAENFSRENNFKLNISKGDIRKLP---FKDESMSFVY 94 (209)
T ss_dssp HSSSCSEEEEESCCSSSCTHHHHHH--TTCEEEEEECCHHHHHHHHHHHHHHTCCCCEEECCTTSCC---SCTTCEEEEE
T ss_pred ccCCCCEEEEECCCCCHHHHHHHHh--CCCEEEEEECCHHHHHHHHHHHHhcCCceEEEECchhhCC---CCCCceeEEE
Confidence 3567899999999999986555544 3459999999996666555554432 67999999998754 2257899999
Q ss_pred EeCC---C--hhHHHHHHHHHhccCCCCcEEEEEEc
Q 021911 219 SDVA---Q--PDQARILALNASYFLKAGGHFVISIK 249 (305)
Q Consensus 219 ~d~~---~--~~~~~~l~~~a~~~LkpGG~lv~s~~ 249 (305)
+..+ . .+...++. ++.++|||||+|++++.
T Consensus 95 ~~~~l~~~~~~~~~~~l~-~~~~~LkpgG~l~~~~~ 129 (209)
T 2p8j_A 95 SYGTIFHMRKNDVKEAID-EIKRVLKPGGLACINFL 129 (209)
T ss_dssp ECSCGGGSCHHHHHHHHH-HHHHHEEEEEEEEEEEE
T ss_pred EcChHHhCCHHHHHHHHH-HHHHHcCCCcEEEEEEe
Confidence 8654 2 45666666 99999999999999874
|
| >2nyu_A Putative ribosomal RNA methyltransferase 2; SAM, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.76A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.37 E-value=1.8e-12 Score=109.57 Aligned_cols=99 Identities=28% Similarity=0.371 Sum_probs=75.0
Q ss_pred CCCCCCEEEEEecCCCccHHHHHhhhCCC--------cEEEEEeCChHHHHHHHHHHHcCCCeEEE-EccCCCCccc---
Q 021911 140 WIKPGARVLYLGAASGTTVSHVSDIVGPN--------GVVYAVEFSHRSGRDLVNMAKKRTNVIPI-IEDARHPAKY--- 207 (305)
Q Consensus 140 ~~~~g~~VLDlG~G~G~~t~~la~~~~~~--------~~V~avD~s~~~~~~l~~~a~~~~nI~~~-~~D~~~~~~~--- 207 (305)
.++++.+|||+|||+|.++..+++.++.. .+|+++|+|+. ....++.++ +.|+......
T Consensus 19 ~~~~~~~vLDlGcG~G~~~~~la~~~~~~~~~~~~~~~~v~~vD~s~~---------~~~~~~~~~~~~d~~~~~~~~~~ 89 (196)
T 2nyu_A 19 ILRPGLRVLDCGAAPGAWSQVAVQKVNAAGTDPSSPVGFVLGVDLLHI---------FPLEGATFLCPADVTDPRTSQRI 89 (196)
T ss_dssp CCCTTCEEEEETCCSCHHHHHHHHHTTTTCCCTTSCCCEEEEECSSCC---------CCCTTCEEECSCCTTSHHHHHHH
T ss_pred CCCCCCEEEEeCCCCCHHHHHHHHHhccccccccCCCceEEEEechhc---------ccCCCCeEEEeccCCCHHHHHHH
Confidence 35788999999999999999999997543 79999999982 112578999 8998765321
Q ss_pred --ccCCCcEeEEEEeCCC-------hhH-------HHHHHHHHhccCCCCcEEEEEE
Q 021911 208 --RMLVGMVDVIFSDVAQ-------PDQ-------ARILALNASYFLKAGGHFVISI 248 (305)
Q Consensus 208 --~~~~~~fD~V~~d~~~-------~~~-------~~~l~~~a~~~LkpGG~lv~s~ 248 (305)
.....+||+|+++.+. .+. ..++. ++.++|||||+|++.+
T Consensus 90 ~~~~~~~~fD~V~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~~~~LkpgG~lv~~~ 145 (196)
T 2nyu_A 90 LEVLPGRRADVILSDMAPNATGFRDLDHDRLISLCLTLLS-VTPDILQPGGTFLCKT 145 (196)
T ss_dssp HHHSGGGCEEEEEECCCCCCCSCHHHHHHHHHHHHHHHHH-HHHHHEEEEEEEEEEE
T ss_pred HHhcCCCCCcEEEeCCCCCCCCCcccCHHHHHHHHHHHHH-HHHHHhcCCCEEEEEe
Confidence 0113589999997742 122 35565 8999999999999987
|
| >1wxx_A TT1595, hypothetical protein TTHA1280; thermus thermophillus, methyltransferase, adoMet, structural genomics; 1.80A {Thermus thermophilus} SCOP: b.122.1.9 c.66.1.51 PDB: 1wxw_A 2cww_A* | Back alignment and structure |
|---|
Probab=99.37 E-value=2e-12 Score=121.60 Aligned_cols=102 Identities=21% Similarity=0.106 Sum_probs=83.4
Q ss_pred CCCEEEEEecCCCccHHHHHhhhCCCcEEEEEeCChHHHHHHHHHHHcC--CCeEEEEccCCCCccc-ccCCCcEeEEEE
Q 021911 143 PGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKR--TNVIPIIEDARHPAKY-RMLVGMVDVIFS 219 (305)
Q Consensus 143 ~g~~VLDlG~G~G~~t~~la~~~~~~~~V~avD~s~~~~~~l~~~a~~~--~nI~~~~~D~~~~~~~-~~~~~~fD~V~~ 219 (305)
++.+|||+|||+|.++.++|.. ..+|++||+|+.+++.+.++++.+ .|+.+++.|+.+.... .....+||+|++
T Consensus 209 ~~~~VLDlg~G~G~~~~~la~~---~~~v~~vD~s~~~~~~a~~n~~~n~~~~~~~~~~d~~~~~~~~~~~~~~fD~Ii~ 285 (382)
T 1wxx_A 209 RGERALDVFSYAGGFALHLALG---FREVVAVDSSAEALRRAEENARLNGLGNVRVLEANAFDLLRRLEKEGERFDLVVL 285 (382)
T ss_dssp CEEEEEEETCTTTHHHHHHHHH---EEEEEEEESCHHHHHHHHHHHHHTTCTTEEEEESCHHHHHHHHHHTTCCEEEEEE
T ss_pred CCCeEEEeeeccCHHHHHHHHh---CCEEEEEECCHHHHHHHHHHHHHcCCCCceEEECCHHHHHHHHHhcCCCeeEEEE
Confidence 7789999999999999999987 358999999998877777777655 5699999998765321 011468999999
Q ss_pred eCCC------------hhHHHHHHHHHhccCCCCcEEEEEE
Q 021911 220 DVAQ------------PDQARILALNASYFLKAGGHFVISI 248 (305)
Q Consensus 220 d~~~------------~~~~~~l~~~a~~~LkpGG~lv~s~ 248 (305)
|+|. ..+.+++. ++.++|+|||.|++++
T Consensus 286 dpP~~~~~~~~~~~~~~~~~~~l~-~~~~~LkpgG~l~~~~ 325 (382)
T 1wxx_A 286 DPPAFAKGKKDVERAYRAYKEVNL-RAIKLLKEGGILATAS 325 (382)
T ss_dssp CCCCSCCSTTSHHHHHHHHHHHHH-HHHHTEEEEEEEEEEE
T ss_pred CCCCCCCChhHHHHHHHHHHHHHH-HHHHhcCCCCEEEEEE
Confidence 9985 45666776 8999999999999997
|
| >1mjf_A Spermidine synthase; spermidine synthetase, structural genomics, PSI, protein structure initiative; 1.80A {Pyrococcus furiosus} SCOP: c.66.1.17 PDB: 2e5w_A* 2zsu_A* | Back alignment and structure |
|---|
Probab=99.36 E-value=1.8e-11 Score=110.43 Aligned_cols=145 Identities=20% Similarity=0.150 Sum_probs=100.9
Q ss_pred CCCCEEEEEecCCCccHHHHHhhhCCCcEEEEEeCChHHHHHHHHHH----H--------cCCCeEEEEccCCCCccccc
Q 021911 142 KPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMA----K--------KRTNVIPIIEDARHPAKYRM 209 (305)
Q Consensus 142 ~~g~~VLDlG~G~G~~t~~la~~~~~~~~V~avD~s~~~~~~l~~~a----~--------~~~nI~~~~~D~~~~~~~~~ 209 (305)
....+|||||||+|.++..+++. +..+|++||+|+..++.+.+.. . ..+++++++.|+.+....
T Consensus 74 ~~~~~VLdiG~G~G~~~~~l~~~--~~~~v~~vDid~~~i~~ar~~~~~~~~l~~~~~~~~~~~v~~~~~D~~~~l~~-- 149 (281)
T 1mjf_A 74 PKPKRVLVIGGGDGGTVREVLQH--DVDEVIMVEIDEDVIMVSKDLIKIDNGLLEAMLNGKHEKAKLTIGDGFEFIKN-- 149 (281)
T ss_dssp SCCCEEEEEECTTSHHHHHHTTS--CCSEEEEEESCHHHHHHHHHHTCTTTTHHHHHHTTCCSSEEEEESCHHHHHHH--
T ss_pred CCCCeEEEEcCCcCHHHHHHHhC--CCCEEEEEECCHHHHHHHHHHHhhccccccccccCCCCcEEEEECchHHHhcc--
Confidence 34589999999999999999987 5679999999996665555544 1 135799999998654321
Q ss_pred CCCcEeEEEEeCCChh-------HHHHHHHHHhccCCCCcEEEEEEcccccCCCCchhhhHHHHHHHHHHCCCcEeEEe-
Q 021911 210 LVGMVDVIFSDVAQPD-------QARILALNASYFLKAGGHFVISIKANCIDSTVPAEAVFQSEVKKLQQDQFKPFEQV- 281 (305)
Q Consensus 210 ~~~~fD~V~~d~~~~~-------~~~~l~~~a~~~LkpGG~lv~s~~~~~i~~~~~~~~v~~~~~~~l~~~Gf~~~e~~- 281 (305)
..+||+|++|++.+. ..+++. ++.++|||||.|++.+ .+... ....+....+.+++. |...+..
T Consensus 150 -~~~fD~Ii~d~~~~~~~~~~l~~~~~l~-~~~~~L~pgG~lv~~~--~~~~~---~~~~~~~~~~~l~~~-f~~v~~~~ 221 (281)
T 1mjf_A 150 -NRGFDVIIADSTDPVGPAKVLFSEEFYR-YVYDALNNPGIYVTQA--GSVYL---FTDELISAYKEMKKV-FDRVYYYS 221 (281)
T ss_dssp -CCCEEEEEEECCCCC-----TTSHHHHH-HHHHHEEEEEEEEEEE--EETTT---SHHHHHHHHHHHHHH-CSEEEEEE
T ss_pred -cCCeeEEEECCCCCCCcchhhhHHHHHH-HHHHhcCCCcEEEEEc--CCccc---CHHHHHHHHHHHHHH-CCceEEEE
Confidence 468999999988531 245566 8999999999999986 22211 122333444555544 6655543
Q ss_pred -ecCCCCCceEEEEEEEc
Q 021911 282 -TLEPFERDHACVVGGYR 298 (305)
Q Consensus 282 -~l~p~~~~~~~vv~~~~ 298 (305)
.+..+...+.++++.+.
T Consensus 222 ~~vP~~~g~~~~~~as~~ 239 (281)
T 1mjf_A 222 FPVIGYASPWAFLVGVKG 239 (281)
T ss_dssp ECCTTSSSSEEEEEEEES
T ss_pred EecCCCCceEEEEEeeCC
Confidence 34556567778888875
|
| >4e2x_A TCAB9; kijanose, tetronitrose, tetradeoxy sugar, sugar methylation, transferase; HET: SAH TYD; 1.40A {Micromonospora chalcea} PDB: 3ndi_A* 3ndj_A* 4e32_A* 4e33_A* 4e2y_A* 4e31_A* 4e2w_A* 4e2z_A* 4e30_A* | Back alignment and structure |
|---|
Probab=99.36 E-value=4.4e-12 Score=120.20 Aligned_cols=164 Identities=15% Similarity=0.137 Sum_probs=104.7
Q ss_pred cCchhhHHHHHHHccccccCCCCCCEEEEEecCCCccHHHHHhhhCCCcEEEEEeCChHHHHHHHHHHHcCCCeEEEEcc
Q 021911 121 WNPFRSKLAAAVLGGVDNIWIKPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKRTNVIPIIED 200 (305)
Q Consensus 121 ~~~~~s~l~a~ll~~l~~~~~~~g~~VLDlG~G~G~~t~~la~~~~~~~~V~avD~s~~~~~~l~~~a~~~~nI~~~~~D 200 (305)
|......++..++.. +.+.++.+|||+|||+|.++..+++. ..+|+++|+|+ .+++.++++ ++......
T Consensus 88 ~~~~~~~~~~~l~~~---~~~~~~~~VLDiGcG~G~~~~~l~~~---g~~v~gvD~s~----~~~~~a~~~-~~~~~~~~ 156 (416)
T 4e2x_A 88 MREHFAMLARDFLAT---ELTGPDPFIVEIGCNDGIMLRTIQEA---GVRHLGFEPSS----GVAAKAREK-GIRVRTDF 156 (416)
T ss_dssp HHHHHHHHHHHHHHT---TTCSSSCEEEEETCTTTTTHHHHHHT---TCEEEEECCCH----HHHHHHHTT-TCCEECSC
T ss_pred HHHHHHHHHHHHHHH---hCCCCCCEEEEecCCCCHHHHHHHHc---CCcEEEECCCH----HHHHHHHHc-CCCcceee
Confidence 333344455555433 35678899999999999999999986 24899999999 777777765 33333322
Q ss_pred CCCCc--ccccCCCcEeEEEEeCC---ChhHHHHHHHHHhccCCCCcEEEEEEccc-------ccCCCCchh--hhH-HH
Q 021911 201 ARHPA--KYRMLVGMVDVIFSDVA---QPDQARILALNASYFLKAGGHFVISIKAN-------CIDSTVPAE--AVF-QS 265 (305)
Q Consensus 201 ~~~~~--~~~~~~~~fD~V~~d~~---~~~~~~~l~~~a~~~LkpGG~lv~s~~~~-------~i~~~~~~~--~v~-~~ 265 (305)
+.... ......++||+|++... .++...++. +++++|||||+|+++++.. .......+. ..- ..
T Consensus 157 ~~~~~~~~l~~~~~~fD~I~~~~vl~h~~d~~~~l~-~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~s~~~ 235 (416)
T 4e2x_A 157 FEKATADDVRRTEGPANVIYAANTLCHIPYVQSVLE-GVDALLAPDGVFVFEDPYLGDIVAKTSFDQIFDEHFFLFSATS 235 (416)
T ss_dssp CSHHHHHHHHHHHCCEEEEEEESCGGGCTTHHHHHH-HHHHHEEEEEEEEEEEECHHHHHHHTCGGGCSTTCCEECCHHH
T ss_pred echhhHhhcccCCCCEEEEEECChHHhcCCHHHHHH-HHHHHcCCCeEEEEEeCChHHhhhhcchhhhhhhhhhcCCHHH
Confidence 11111 01112479999999776 567788887 9999999999999987421 001100010 111 22
Q ss_pred HHHHHHHCCCcEeEEeecCCCCCceEEEEEE
Q 021911 266 EVKKLQQDQFKPFEQVTLEPFERDHACVVGG 296 (305)
Q Consensus 266 ~~~~l~~~Gf~~~e~~~l~p~~~~~~~vv~~ 296 (305)
....++++||++++...+..+.....+++.+
T Consensus 236 l~~ll~~aGf~~~~~~~~~~~~g~l~~~~~~ 266 (416)
T 4e2x_A 236 VQGMAQRCGFELVDVQRLPVHGGEVRYTLAR 266 (416)
T ss_dssp HHHHHHHTTEEEEEEEEECGGGSEEEEEEEE
T ss_pred HHHHHHHcCCEEEEEEEccCCCCEEEEEEEe
Confidence 3456689999999888776554444444443
|
| >1ws6_A Methyltransferase; structural genomics, riken structural genomics/proteomics initiative, RSGI; 2.50A {Thermus thermophilus} SCOP: c.66.1.46 | Back alignment and structure |
|---|
Probab=99.36 E-value=9e-13 Score=108.62 Aligned_cols=121 Identities=17% Similarity=0.054 Sum_probs=83.1
Q ss_pred chhhHHHHHHHccccccCCCCCCEEEEEecCCCccHHHHHhhhCCCcEEEEEeCChHHHHHHHHHHHcCC-CeEEEEccC
Q 021911 123 PFRSKLAAAVLGGVDNIWIKPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKRT-NVIPIIEDA 201 (305)
Q Consensus 123 ~~~s~l~a~ll~~l~~~~~~~g~~VLDlG~G~G~~t~~la~~~~~~~~V~avD~s~~~~~~l~~~a~~~~-nI~~~~~D~ 201 (305)
|....+...++..+.. .+.++.+|||+|||+|.++..+++.. + .|+++|+|+.+++.+.+.+.... ++++++.|+
T Consensus 22 ~~~~~~~~~~~~~~~~-~~~~~~~vLD~GcG~G~~~~~l~~~~-~--~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~d~ 97 (171)
T 1ws6_A 22 PSPVRLRKALFDYLRL-RYPRRGRFLDPFAGSGAVGLEAASEG-W--EAVLVEKDPEAVRLLKENVRRTGLGARVVALPV 97 (171)
T ss_dssp CCCHHHHHHHHHHHHH-HCTTCCEEEEETCSSCHHHHHHHHTT-C--EEEEECCCHHHHHHHHHHHHHHTCCCEEECSCH
T ss_pred CCHHHHHHHHHHHHHh-hccCCCeEEEeCCCcCHHHHHHHHCC-C--eEEEEeCCHHHHHHHHHHHHHcCCceEEEeccH
Confidence 3344555555443321 13367899999999999999999873 2 49999999966655555544333 799999998
Q ss_pred CCCccc-ccCCCcEeEEEEeCCC-hhHHHHHHHHHh--ccCCCCcEEEEEE
Q 021911 202 RHPAKY-RMLVGMVDVIFSDVAQ-PDQARILALNAS--YFLKAGGHFVISI 248 (305)
Q Consensus 202 ~~~~~~-~~~~~~fD~V~~d~~~-~~~~~~l~~~a~--~~LkpGG~lv~s~ 248 (305)
.+.... .....+||+|+++++. .+..+.+. .+. ++|||+|.+++++
T Consensus 98 ~~~~~~~~~~~~~~D~i~~~~~~~~~~~~~~~-~~~~~~~L~~gG~~~~~~ 147 (171)
T 1ws6_A 98 EVFLPEAKAQGERFTVAFMAPPYAMDLAALFG-ELLASGLVEAGGLYVLQH 147 (171)
T ss_dssp HHHHHHHHHTTCCEEEEEECCCTTSCTTHHHH-HHHHHTCEEEEEEEEEEE
T ss_pred HHHHHhhhccCCceEEEEECCCCchhHHHHHH-HHHhhcccCCCcEEEEEe
Confidence 764221 1112489999999874 33334444 555 9999999999987
|
| >3c0k_A UPF0064 protein YCCW; PUA domain, adoMet dependent methyltransferase fold; 2.00A {Escherichia coli K12} | Back alignment and structure |
|---|
Probab=99.36 E-value=6.6e-12 Score=118.55 Aligned_cols=104 Identities=16% Similarity=-0.006 Sum_probs=84.0
Q ss_pred CCCCEEEEEecCCCccHHHHHhhhCCCcEEEEEeCChHHHHHHHHHHHcC---C-CeEEEEccCCCCcccc-cCCCcEeE
Q 021911 142 KPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKR---T-NVIPIIEDARHPAKYR-MLVGMVDV 216 (305)
Q Consensus 142 ~~g~~VLDlG~G~G~~t~~la~~~~~~~~V~avD~s~~~~~~l~~~a~~~---~-nI~~~~~D~~~~~~~~-~~~~~fD~ 216 (305)
.++.+|||+|||+|.++.++|.. ...+|++||+|+.+++.+.++++.+ + ++++++.|+.+..... ....+||+
T Consensus 219 ~~~~~VLDl~cG~G~~sl~la~~--g~~~V~~vD~s~~al~~a~~n~~~ngl~~~~v~~~~~D~~~~~~~~~~~~~~fD~ 296 (396)
T 3c0k_A 219 VENKRVLNCFSYTGGFAVSALMG--GCSQVVSVDTSQEALDIARQNVELNKLDLSKAEFVRDDVFKLLRTYRDRGEKFDV 296 (396)
T ss_dssp CTTCEEEEESCTTCSHHHHHHHT--TCSEEEEEESCHHHHHHHHHHHHHTTCCGGGEEEEESCHHHHHHHHHHTTCCEEE
T ss_pred hCCCeEEEeeccCCHHHHHHHHC--CCCEEEEEECCHHHHHHHHHHHHHcCCCccceEEEECCHHHHHHHHHhcCCCCCE
Confidence 57789999999999999999986 2458999999998877777776654 2 7899999987653210 01358999
Q ss_pred EEEeCCC------------hhHHHHHHHHHhccCCCCcEEEEEE
Q 021911 217 IFSDVAQ------------PDQARILALNASYFLKAGGHFVISI 248 (305)
Q Consensus 217 V~~d~~~------------~~~~~~l~~~a~~~LkpGG~lv~s~ 248 (305)
|++|+|. ..+.+++. ++.++|+|+|.|++++
T Consensus 297 Ii~dpP~~~~~~~~~~~~~~~~~~~l~-~~~~~LkpgG~l~~~~ 339 (396)
T 3c0k_A 297 IVMDPPKFVENKSQLMGACRGYKDINM-LAIQLLNEGGILLTFS 339 (396)
T ss_dssp EEECCSSTTTCSSSSSCCCTHHHHHHH-HHHHTEEEEEEEEEEE
T ss_pred EEECCCCCCCChhHHHHHHHHHHHHHH-HHHHhcCCCcEEEEEe
Confidence 9999985 56677777 8999999999999987
|
| >1uir_A Polyamine aminopropyltransferase; spermidien synthase, spermine synthase, riken STR genomics/proteomics initiative, RSGI; 2.00A {Thermus thermophilus} SCOP: c.66.1.17 PDB: 3anx_A* | Back alignment and structure |
|---|
Probab=99.36 E-value=1.3e-11 Score=113.00 Aligned_cols=148 Identities=16% Similarity=0.165 Sum_probs=101.7
Q ss_pred CCCCEEEEEecCCCccHHHHHhhhCCCcEEEEEeCChHHHHHHHHHHHc-------CCCeEEEEccCCCCcccccCCCcE
Q 021911 142 KPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKK-------RTNVIPIIEDARHPAKYRMLVGMV 214 (305)
Q Consensus 142 ~~g~~VLDlG~G~G~~t~~la~~~~~~~~V~avD~s~~~~~~l~~~a~~-------~~nI~~~~~D~~~~~~~~~~~~~f 214 (305)
....+|||||||+|.++..+++.. +..+|++||+|+..++.+.+.... .+++++++.|+...... ..++|
T Consensus 76 ~~~~~VLdiG~G~G~~~~~l~~~~-~~~~v~~vDid~~~i~~ar~~~~~~~~~~~~~~~v~~~~~D~~~~l~~--~~~~f 152 (314)
T 1uir_A 76 PEPKRVLIVGGGEGATLREVLKHP-TVEKAVMVDIDGELVEVAKRHMPEWHQGAFDDPRAVLVIDDARAYLER--TEERY 152 (314)
T ss_dssp SCCCEEEEEECTTSHHHHHHTTST-TCCEEEEEESCHHHHHHHHHHCHHHHTTGGGCTTEEEEESCHHHHHHH--CCCCE
T ss_pred CCCCeEEEEcCCcCHHHHHHHhcC-CCCEEEEEECCHHHHHHHHHHhHhhccccccCCceEEEEchHHHHHHh--cCCCc
Confidence 345899999999999999999874 456899999999666655554432 36899999998764322 25689
Q ss_pred eEEEEeCCChh----------HHHHHHHHHhccCCCCcEEEEEEcccccCCCCchhhhHHHHHHHHHHCCCcEeEEe--e
Q 021911 215 DVIFSDVAQPD----------QARILALNASYFLKAGGHFVISIKANCIDSTVPAEAVFQSEVKKLQQDQFKPFEQV--T 282 (305)
Q Consensus 215 D~V~~d~~~~~----------~~~~l~~~a~~~LkpGG~lv~s~~~~~i~~~~~~~~v~~~~~~~l~~~Gf~~~e~~--~ 282 (305)
|+|++|.+.+. ..+.+. ++.++|||||.|++.+. +... . ....+....+.+++. |...... .
T Consensus 153 D~Ii~d~~~~~~~~~~~~~l~~~~~l~-~~~~~LkpgG~lv~~~~--~~~~-~-~~~~~~~~~~~l~~~-F~~v~~~~~~ 226 (314)
T 1uir_A 153 DVVIIDLTDPVGEDNPARLLYTVEFYR-LVKAHLNPGGVMGMQTG--MILL-T-HHRVHPVVHRTVREA-FRYVRSYKNH 226 (314)
T ss_dssp EEEEEECCCCBSTTCGGGGGSSHHHHH-HHHHTEEEEEEEEEEEE--EECC-----CHHHHHHHHHHTT-CSEEEEEEEE
T ss_pred cEEEECCCCcccccCcchhccHHHHHH-HHHHhcCCCcEEEEEcc--Cccc-c-CHHHHHHHHHHHHHH-CCceEEEEEe
Confidence 99999987654 356676 99999999999999752 2110 1 112334445556555 7655433 3
Q ss_pred cCCCCCceEEEEEEEc
Q 021911 283 LEPFERDHACVVGGYR 298 (305)
Q Consensus 283 l~p~~~~~~~vv~~~~ 298 (305)
+..+...+.++++.+.
T Consensus 227 vP~~~g~~~~~~as~~ 242 (314)
T 1uir_A 227 IPGFFLNFGFLLASDA 242 (314)
T ss_dssp EGGGTEEEEEEEEESS
T ss_pred cCCCCCeEEEEEEECC
Confidence 4445455667778765
|
| >2gs9_A Hypothetical protein TT1324; methyl transferase, structural genomics, NPPSFA, national PR protein structural and functional analyses; HET: SAH; 2.60A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.36 E-value=1.8e-12 Score=110.97 Aligned_cols=94 Identities=21% Similarity=0.290 Sum_probs=75.5
Q ss_pred CCCEEEEEecCCCccHHHHHhhhCCCcEEEEEeCChHHHHHHHHHHHcC-CCeEEEEccCCCCcccccCCCcEeEEEEeC
Q 021911 143 PGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKR-TNVIPIIEDARHPAKYRMLVGMVDVIFSDV 221 (305)
Q Consensus 143 ~g~~VLDlG~G~G~~t~~la~~~~~~~~V~avD~s~~~~~~l~~~a~~~-~nI~~~~~D~~~~~~~~~~~~~fD~V~~d~ 221 (305)
++.+|||+|||+|.++..+ + ..+|+++|+|+ .+++.++++ +++.+++.|+.+.+ ...++||+|++..
T Consensus 36 ~~~~vLdiG~G~G~~~~~l----~-~~~v~~vD~s~----~~~~~a~~~~~~~~~~~~d~~~~~---~~~~~fD~v~~~~ 103 (211)
T 2gs9_A 36 PGESLLEVGAGTGYWLRRL----P-YPQKVGVEPSE----AMLAVGRRRAPEATWVRAWGEALP---FPGESFDVVLLFT 103 (211)
T ss_dssp CCSEEEEETCTTCHHHHHC----C-CSEEEEECCCH----HHHHHHHHHCTTSEEECCCTTSCC---SCSSCEEEEEEES
T ss_pred CCCeEEEECCCCCHhHHhC----C-CCeEEEEeCCH----HHHHHHHHhCCCcEEEEcccccCC---CCCCcEEEEEEcC
Confidence 7899999999999988877 1 12899999999 555555544 68999999997754 2356899999976
Q ss_pred C---ChhHHHHHHHHHhccCCCCcEEEEEEc
Q 021911 222 A---QPDQARILALNASYFLKAGGHFVISIK 249 (305)
Q Consensus 222 ~---~~~~~~~l~~~a~~~LkpGG~lv~s~~ 249 (305)
. .++..+++. ++.++|||||.|++++.
T Consensus 104 ~l~~~~~~~~~l~-~~~~~L~pgG~l~i~~~ 133 (211)
T 2gs9_A 104 TLEFVEDVERVLL-EARRVLRPGGALVVGVL 133 (211)
T ss_dssp CTTTCSCHHHHHH-HHHHHEEEEEEEEEEEE
T ss_pred hhhhcCCHHHHHH-HHHHHcCCCCEEEEEec
Confidence 6 356777777 99999999999999984
|
| >2pbf_A Protein-L-isoaspartate O-methyltransferase beta-A methyltransferase; protein repair, isoaspartyl formation, P. falciparum; HET: SAH; 2.00A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=99.36 E-value=1.4e-12 Score=113.16 Aligned_cols=106 Identities=19% Similarity=0.227 Sum_probs=81.7
Q ss_pred CCCCCCEEEEEecCCCccHHHHHhhhC----CCcEEEEEeCChHHHHHHHHHHHc-------CCCeEEEEccCCCCccc-
Q 021911 140 WIKPGARVLYLGAASGTTVSHVSDIVG----PNGVVYAVEFSHRSGRDLVNMAKK-------RTNVIPIIEDARHPAKY- 207 (305)
Q Consensus 140 ~~~~g~~VLDlG~G~G~~t~~la~~~~----~~~~V~avD~s~~~~~~l~~~a~~-------~~nI~~~~~D~~~~~~~- 207 (305)
.++++.+|||+|||+|.++..+++.++ +.++|+++|+|+..++.+.+.++. ..++.+++.|+......
T Consensus 77 ~~~~~~~VLdiG~G~G~~~~~la~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~ 156 (227)
T 2pbf_A 77 VLKPGSRAIDVGSGSGYLTVCMAIKMNVLENKNSYVIGLERVKDLVNFSLENIKRDKPELLKIDNFKIIHKNIYQVNEEE 156 (227)
T ss_dssp TSCTTCEEEEESCTTSHHHHHHHHHTTTTTCTTCEEEEEESCHHHHHHHHHHHHHHCGGGGSSTTEEEEECCGGGCCHHH
T ss_pred hCCCCCEEEEECCCCCHHHHHHHHHhcccCCCCCEEEEEeCCHHHHHHHHHHHHHcCccccccCCEEEEECChHhccccc
Confidence 467889999999999999999999875 567999999999766665555443 24799999998764300
Q ss_pred ccCCCcEeEEEEeCCChhHHHHHHHHHhccCCCCcEEEEEEc
Q 021911 208 RMLVGMVDVIFSDVAQPDQARILALNASYFLKAGGHFVISIK 249 (305)
Q Consensus 208 ~~~~~~fD~V~~d~~~~~~~~~l~~~a~~~LkpGG~lv~s~~ 249 (305)
.....+||+|+++.+.+.. +. ++.++|||||+|++++.
T Consensus 157 ~~~~~~fD~I~~~~~~~~~---~~-~~~~~LkpgG~lv~~~~ 194 (227)
T 2pbf_A 157 KKELGLFDAIHVGASASEL---PE-ILVDLLAENGKLIIPIE 194 (227)
T ss_dssp HHHHCCEEEEEECSBBSSC---CH-HHHHHEEEEEEEEEEEE
T ss_pred CccCCCcCEEEECCchHHH---HH-HHHHhcCCCcEEEEEEc
Confidence 0113689999998886542 33 67789999999999873
|
| >3cbg_A O-methyltransferase; cyanobacterium; HET: SAH FER 4FE; 2.00A {Synechocystis SP} | Back alignment and structure |
|---|
Probab=99.36 E-value=1.2e-12 Score=114.57 Aligned_cols=107 Identities=18% Similarity=0.193 Sum_probs=83.5
Q ss_pred CCCCCEEEEEecCCCccHHHHHhhhCCCcEEEEEeCChHHHHHHHHHHHcC---CCeEEEEccCCCCcc-cccCC--CcE
Q 021911 141 IKPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKR---TNVIPIIEDARHPAK-YRMLV--GMV 214 (305)
Q Consensus 141 ~~~g~~VLDlG~G~G~~t~~la~~~~~~~~V~avD~s~~~~~~l~~~a~~~---~nI~~~~~D~~~~~~-~~~~~--~~f 214 (305)
..+..+|||+|||+|..+..+++.+.+.++|+++|+|+.+++.+.+..+.. .+|.+++.|+.+..+ ..... .+|
T Consensus 70 ~~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~l~~l~~~~~~~~f 149 (232)
T 3cbg_A 70 LTGAKQVLEIGVFRGYSALAMALQLPPDGQIIACDQDPNATAIAKKYWQKAGVAEKISLRLGPALATLEQLTQGKPLPEF 149 (232)
T ss_dssp HHTCCEEEEECCTTSHHHHHHHTTSCTTCEEEEEESCHHHHHHHHHHHHHHTCGGGEEEEESCHHHHHHHHHTSSSCCCE
T ss_pred hcCCCEEEEecCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHHHHhcCCCCCc
Confidence 346689999999999999999998755679999999996665555444332 469999999865321 11112 689
Q ss_pred eEEEEeCCChhHHHHHHHHHhccCCCCcEEEEEE
Q 021911 215 DVIFSDVAQPDQARILALNASYFLKAGGHFVISI 248 (305)
Q Consensus 215 D~V~~d~~~~~~~~~l~~~a~~~LkpGG~lv~s~ 248 (305)
|+|+++.+.++....+. ++.++|||||+|++..
T Consensus 150 D~V~~d~~~~~~~~~l~-~~~~~LkpgG~lv~~~ 182 (232)
T 3cbg_A 150 DLIFIDADKRNYPRYYE-IGLNLLRRGGLMVIDN 182 (232)
T ss_dssp EEEEECSCGGGHHHHHH-HHHHTEEEEEEEEEEC
T ss_pred CEEEECCCHHHHHHHHH-HHHHHcCCCeEEEEeC
Confidence 99999998777778887 9999999999999975
|
| >3lbf_A Protein-L-isoaspartate O-methyltransferase; modified rossman-type fold, S-adenosyl-L- methionine; HET: SAH; 1.80A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.35 E-value=3.8e-12 Score=108.93 Aligned_cols=100 Identities=22% Similarity=0.215 Sum_probs=79.0
Q ss_pred CCCCCCEEEEEecCCCccHHHHHhhhCCCcEEEEEeCChHHHHHHHHHHHcC--CCeEEEEccCCCCcccccCCCcEeEE
Q 021911 140 WIKPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKR--TNVIPIIEDARHPAKYRMLVGMVDVI 217 (305)
Q Consensus 140 ~~~~g~~VLDlG~G~G~~t~~la~~~~~~~~V~avD~s~~~~~~l~~~a~~~--~nI~~~~~D~~~~~~~~~~~~~fD~V 217 (305)
.+.++.+|||+|||+|.++..+++. ..+|+++|+|+.+++.+.+.++.. +++.+++.|+...... ..+||+|
T Consensus 74 ~~~~~~~vLdiG~G~G~~~~~la~~---~~~v~~vD~~~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~---~~~~D~i 147 (210)
T 3lbf_A 74 ELTPQSRVLEIGTGSGYQTAILAHL---VQHVCSVERIKGLQWQARRRLKNLDLHNVSTRHGDGWQGWQA---RAPFDAI 147 (210)
T ss_dssp TCCTTCEEEEECCTTSHHHHHHHHH---SSEEEEEESCHHHHHHHHHHHHHTTCCSEEEEESCGGGCCGG---GCCEEEE
T ss_pred CCCCCCEEEEEcCCCCHHHHHHHHh---CCEEEEEecCHHHHHHHHHHHHHcCCCceEEEECCcccCCcc---CCCccEE
Confidence 5678999999999999999999998 359999999996666666555543 5899999999775432 4689999
Q ss_pred EEeCCChhHHHHHHHHHhccCCCCcEEEEEEc
Q 021911 218 FSDVAQPDQARILALNASYFLKAGGHFVISIK 249 (305)
Q Consensus 218 ~~d~~~~~~~~~l~~~a~~~LkpGG~lv~s~~ 249 (305)
+++.+.+...+ ++.++|||||+|++++.
T Consensus 148 ~~~~~~~~~~~----~~~~~L~pgG~lv~~~~ 175 (210)
T 3lbf_A 148 IVTAAPPEIPT----ALMTQLDEGGILVLPVG 175 (210)
T ss_dssp EESSBCSSCCT----HHHHTEEEEEEEEEEEC
T ss_pred EEccchhhhhH----HHHHhcccCcEEEEEEc
Confidence 99876433221 45689999999999983
|
| >3dp7_A SAM-dependent methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research; 2.33A {Bacteroides vulgatus} | Back alignment and structure |
|---|
Probab=99.35 E-value=8.2e-12 Score=116.50 Aligned_cols=101 Identities=10% Similarity=0.052 Sum_probs=77.6
Q ss_pred CCCCEEEEEecCCCccHHHHHhhhCCCcEEEEEeCChHHHHHHHHHHHcC---CCeEEEEccCCCCc-ccccCCCcEeEE
Q 021911 142 KPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKR---TNVIPIIEDARHPA-KYRMLVGMVDVI 217 (305)
Q Consensus 142 ~~g~~VLDlG~G~G~~t~~la~~~~~~~~V~avD~s~~~~~~l~~~a~~~---~nI~~~~~D~~~~~-~~~~~~~~fD~V 217 (305)
....+|||||||+|.++..+++.. +..+|+++|+ +..+..+.+.+.+. ++|+++..|+.+.. +. +..||+|
T Consensus 178 ~~~~~vlDvG~G~G~~~~~l~~~~-p~~~~~~~D~-~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~---p~~~D~v 252 (363)
T 3dp7_A 178 HHPKRLLDIGGNTGKWATQCVQYN-KEVEVTIVDL-PQQLEMMRKQTAGLSGSERIHGHGANLLDRDVPF---PTGFDAV 252 (363)
T ss_dssp GCCSEEEEESCTTCHHHHHHHHHS-TTCEEEEEEC-HHHHHHHHHHHTTCTTGGGEEEEECCCCSSSCCC---CCCCSEE
T ss_pred cCCCEEEEeCCCcCHHHHHHHHhC-CCCEEEEEeC-HHHHHHHHHHHHhcCcccceEEEEccccccCCCC---CCCcCEE
Confidence 456899999999999999999986 6679999999 85555544444433 47999999998753 21 3689999
Q ss_pred EEeCCC-----hhHHHHHHHHHhccCCCCcEEEEEE
Q 021911 218 FSDVAQ-----PDQARILALNASYFLKAGGHFVISI 248 (305)
Q Consensus 218 ~~d~~~-----~~~~~~l~~~a~~~LkpGG~lv~s~ 248 (305)
++.... ++...++. ++++.|||||+|++..
T Consensus 253 ~~~~vlh~~~~~~~~~~l~-~~~~~L~pgG~l~i~e 287 (363)
T 3dp7_A 253 WMSQFLDCFSEEEVISILT-RVAQSIGKDSKVYIME 287 (363)
T ss_dssp EEESCSTTSCHHHHHHHHH-HHHHHCCTTCEEEEEE
T ss_pred EEechhhhCCHHHHHHHHH-HHHHhcCCCcEEEEEe
Confidence 985542 23346666 9999999999999976
|
| >3v97_A Ribosomal RNA large subunit methyltransferase L; YCBY, RNA methyltransferase, ribosome RNA, SAH, RLML; HET: SAH OSU; 2.20A {Escherichia coli} PDB: 3v8v_A* | Back alignment and structure |
|---|
Probab=99.35 E-value=5.7e-12 Score=127.16 Aligned_cols=122 Identities=18% Similarity=0.117 Sum_probs=91.4
Q ss_pred CCCCEEEEEecCCCccHHHHHhhhCCCcEEEEEeCChHHHHHHHHHHHcC----CCeEEEEccCCCCcccccCCCcEeEE
Q 021911 142 KPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKR----TNVIPIIEDARHPAKYRMLVGMVDVI 217 (305)
Q Consensus 142 ~~g~~VLDlG~G~G~~t~~la~~~~~~~~V~avD~s~~~~~~l~~~a~~~----~nI~~~~~D~~~~~~~~~~~~~fD~V 217 (305)
.++.+|||+|||+|.++.+++.. ...+|++||+|+.++..+.++++.+ .++++++.|+.+.... ...+||+|
T Consensus 538 ~~g~~VLDlg~GtG~~sl~aa~~--ga~~V~aVD~s~~al~~a~~N~~~ngl~~~~v~~i~~D~~~~l~~--~~~~fD~I 613 (703)
T 3v97_A 538 SKGKDFLNLFSYTGSATVHAGLG--GARSTTTVDMSRTYLEWAERNLRLNGLTGRAHRLIQADCLAWLRE--ANEQFDLI 613 (703)
T ss_dssp CTTCEEEEESCTTCHHHHHHHHT--TCSEEEEEESCHHHHHHHHHHHHHTTCCSTTEEEEESCHHHHHHH--CCCCEEEE
T ss_pred cCCCcEEEeeechhHHHHHHHHC--CCCEEEEEeCCHHHHHHHHHHHHHcCCCccceEEEecCHHHHHHh--cCCCccEE
Confidence 36889999999999999999975 3457999999997777777766654 3799999999775332 24689999
Q ss_pred EEeCCC--------------hhHHHHHHHHHhccCCCCcEEEEEEcccccCCCCchhhhHHHHHHHHHHCCCcEe
Q 021911 218 FSDVAQ--------------PDQARILALNASYFLKAGGHFVISIKANCIDSTVPAEAVFQSEVKKLQQDQFKPF 278 (305)
Q Consensus 218 ~~d~~~--------------~~~~~~l~~~a~~~LkpGG~lv~s~~~~~i~~~~~~~~v~~~~~~~l~~~Gf~~~ 278 (305)
++|+|. .++.+++. .+.++|||||+|++++ |+.....+ .+.+++.+|+..
T Consensus 614 i~DPP~f~~~~~~~~~~~~~~~~~~ll~-~a~~~LkpgG~L~~s~--~~~~~~~~--------~~~l~~~g~~~~ 677 (703)
T 3v97_A 614 FIDPPTFSNSKRMEDAFDVQRDHLALMK-DLKRLLRAGGTIMFSN--NKRGFRMD--------LDGLAKLGLKAQ 677 (703)
T ss_dssp EECCCSBC-------CCBHHHHHHHHHH-HHHHHEEEEEEEEEEE--CCTTCCCC--------HHHHHHTTEEEE
T ss_pred EECCccccCCccchhHHHHHHHHHHHHH-HHHHhcCCCcEEEEEE--CCcccccC--------HHHHHHcCCcee
Confidence 999983 24556666 8999999999999987 22111111 345567787743
|
| >1iy9_A Spermidine synthase; rossmann fold, structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.30A {Bacillus subtilis} SCOP: c.66.1.17 | Back alignment and structure |
|---|
Probab=99.35 E-value=2.1e-11 Score=109.62 Aligned_cols=148 Identities=14% Similarity=0.121 Sum_probs=102.6
Q ss_pred CCCEEEEEecCCCccHHHHHhhhCCCcEEEEEeCChHHHHHHHHHHHc------CCCeEEEEccCCCCcccccCCCcEeE
Q 021911 143 PGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKK------RTNVIPIIEDARHPAKYRMLVGMVDV 216 (305)
Q Consensus 143 ~g~~VLDlG~G~G~~t~~la~~~~~~~~V~avD~s~~~~~~l~~~a~~------~~nI~~~~~D~~~~~~~~~~~~~fD~ 216 (305)
...+|||||||+|.++..+++.. +..+|++||+++..++.+.+.... .+++++++.|+...... ...+||+
T Consensus 75 ~~~~VLdiG~G~G~~~~~l~~~~-~~~~v~~vEid~~~v~~ar~~~~~~~~~~~~~rv~v~~~D~~~~l~~--~~~~fD~ 151 (275)
T 1iy9_A 75 NPEHVLVVGGGDGGVIREILKHP-SVKKATLVDIDGKVIEYSKKFLPSIAGKLDDPRVDVQVDDGFMHIAK--SENQYDV 151 (275)
T ss_dssp SCCEEEEESCTTCHHHHHHTTCT-TCSEEEEEESCHHHHHHHHHHCHHHHTTTTSTTEEEEESCSHHHHHT--CCSCEEE
T ss_pred CCCEEEEECCchHHHHHHHHhCC-CCceEEEEECCHHHHHHHHHHhHhhccccCCCceEEEECcHHHHHhh--CCCCeeE
Confidence 45899999999999999999873 356999999999665555544321 26899999998764322 2468999
Q ss_pred EEEeCCChh-------HHHHHHHHHhccCCCCcEEEEEEcccccCCCCchhhhHHHHHHHHHHCCCcEeEEe--ecCCC-
Q 021911 217 IFSDVAQPD-------QARILALNASYFLKAGGHFVISIKANCIDSTVPAEAVFQSEVKKLQQDQFKPFEQV--TLEPF- 286 (305)
Q Consensus 217 V~~d~~~~~-------~~~~l~~~a~~~LkpGG~lv~s~~~~~i~~~~~~~~v~~~~~~~l~~~Gf~~~e~~--~l~p~- 286 (305)
|++|++.+. ..+++. ++.++|||+|.|++.+ .+... ....+....+.|++. |...+.. .+..|
T Consensus 152 Ii~d~~~~~~~~~~l~~~~~~~-~~~~~L~pgG~lv~~~--~~~~~---~~~~~~~~~~~l~~~-F~~v~~~~~~vp~~~ 224 (275)
T 1iy9_A 152 IMVDSTEPVGPAVNLFTKGFYA-GIAKALKEDGIFVAQT--DNPWF---TPELITNVQRDVKEI-FPITKLYTANIPTYP 224 (275)
T ss_dssp EEESCSSCCSCCCCCSTTHHHH-HHHHHEEEEEEEEEEC--CCTTT---CHHHHHHHHHHHHTT-CSEEEEEEECCTTSG
T ss_pred EEECCCCCCCcchhhhHHHHHH-HHHHhcCCCcEEEEEc--CCccc---cHHHHHHHHHHHHHh-CCCeEEEEEecCccc
Confidence 999987542 245666 8999999999999986 22111 123344455666666 7765543 34455
Q ss_pred CCceEEEEEEEcCC
Q 021911 287 ERDHACVVGGYRMP 300 (305)
Q Consensus 287 ~~~~~~vv~~~~~~ 300 (305)
...+.++++.+...
T Consensus 225 ~g~w~~~~ask~~~ 238 (275)
T 1iy9_A 225 SGLWTFTIGSKKYD 238 (275)
T ss_dssp GGCEEEEEEESSCC
T ss_pred CcceEEEEeeCCCC
Confidence 45677778876543
|
| >2yvl_A TRMI protein, hypothetical protein; tRNA, methyltransferase, S-adenosylmethionine, structural GE NPPSFA; HET: SAM; 2.20A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=99.34 E-value=1e-11 Score=108.73 Aligned_cols=100 Identities=23% Similarity=0.255 Sum_probs=80.7
Q ss_pred CCCCCCEEEEEecCCCccHHHHHhhhCCCcEEEEEeCChHHHHHHHHHHHcC---CCeEEEEccCCCCcccccCCCcEeE
Q 021911 140 WIKPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKR---TNVIPIIEDARHPAKYRMLVGMVDV 216 (305)
Q Consensus 140 ~~~~g~~VLDlG~G~G~~t~~la~~~~~~~~V~avD~s~~~~~~l~~~a~~~---~nI~~~~~D~~~~~~~~~~~~~fD~ 216 (305)
.+.++.+|||+|||+|.++..+++. ..+|+++|+|+.+++.+.+..+.. +++.+++.|+.+... ....||+
T Consensus 88 ~~~~~~~vldiG~G~G~~~~~l~~~---~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~---~~~~~D~ 161 (248)
T 2yvl_A 88 NLNKEKRVLEFGTGSGALLAVLSEV---AGEVWTFEAVEEFYKTAQKNLKKFNLGKNVKFFNVDFKDAEV---PEGIFHA 161 (248)
T ss_dssp TCCTTCEEEEECCTTSHHHHHHHHH---SSEEEEECSCHHHHHHHHHHHHHTTCCTTEEEECSCTTTSCC---CTTCBSE
T ss_pred CCCCCCEEEEeCCCccHHHHHHHHh---CCEEEEEecCHHHHHHHHHHHHHcCCCCcEEEEEcChhhccc---CCCcccE
Confidence 5678899999999999999999998 359999999997766666555443 579999999877531 1358999
Q ss_pred EEEeCCChhHHHHHHHHHhccCCCCcEEEEEE
Q 021911 217 IFSDVAQPDQARILALNASYFLKAGGHFVISI 248 (305)
Q Consensus 217 V~~d~~~~~~~~~l~~~a~~~LkpGG~lv~s~ 248 (305)
|+++++.+ ..++. ++.++|||+|+|++.+
T Consensus 162 v~~~~~~~--~~~l~-~~~~~L~~gG~l~~~~ 190 (248)
T 2yvl_A 162 AFVDVREP--WHYLE-KVHKSLMEGAPVGFLL 190 (248)
T ss_dssp EEECSSCG--GGGHH-HHHHHBCTTCEEEEEE
T ss_pred EEECCcCH--HHHHH-HHHHHcCCCCEEEEEe
Confidence 99988755 34455 8889999999999998
|
| >2o07_A Spermidine synthase; structural genomics, structural genomics consortium, SGC, transferase; HET: SPD MTA; 1.89A {Homo sapiens} SCOP: c.66.1.17 PDB: 2o06_A* 2o05_A* 2o0l_A* 3rw9_A* | Back alignment and structure |
|---|
Probab=99.34 E-value=2.9e-11 Score=110.27 Aligned_cols=147 Identities=14% Similarity=0.099 Sum_probs=95.9
Q ss_pred CCCCEEEEEecCCCccHHHHHhhhCCCcEEEEEeCChHHHHHHHHHHHc------CCCeEEEEccCCCCcccccCCCcEe
Q 021911 142 KPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKK------RTNVIPIIEDARHPAKYRMLVGMVD 215 (305)
Q Consensus 142 ~~g~~VLDlG~G~G~~t~~la~~~~~~~~V~avD~s~~~~~~l~~~a~~------~~nI~~~~~D~~~~~~~~~~~~~fD 215 (305)
....+|||||||+|.++..+++.. +..+|++||+|+..++.+.+.... .+++++++.|+.+.... ...+||
T Consensus 94 ~~~~~VLdiG~G~G~~~~~l~~~~-~~~~v~~vDid~~~i~~ar~~~~~~~~~~~~~rv~v~~~Da~~~l~~--~~~~fD 170 (304)
T 2o07_A 94 PNPRKVLIIGGGDGGVLREVVKHP-SVESVVQCEIDEDVIQVSKKFLPGMAIGYSSSKLTLHVGDGFEFMKQ--NQDAFD 170 (304)
T ss_dssp SSCCEEEEEECTTSHHHHHHTTCT-TCCEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHHHHT--CSSCEE
T ss_pred CCCCEEEEECCCchHHHHHHHHcC-CCCEEEEEECCHHHHHHHHHHhHHhhcccCCCcEEEEECcHHHHHhh--CCCCce
Confidence 345899999999999999999873 456999999999666655554432 36899999998664221 246899
Q ss_pred EEEEeCCChh-------HHHHHHHHHhccCCCCcEEEEEEcccccCCCCchhhhHHHHHHHHHHCCCcEeEEe--ecCCC
Q 021911 216 VIFSDVAQPD-------QARILALNASYFLKAGGHFVISIKANCIDSTVPAEAVFQSEVKKLQQDQFKPFEQV--TLEPF 286 (305)
Q Consensus 216 ~V~~d~~~~~-------~~~~l~~~a~~~LkpGG~lv~s~~~~~i~~~~~~~~v~~~~~~~l~~~Gf~~~e~~--~l~p~ 286 (305)
+|++|++.+. ..+.+. ++.++|||||.|++.. .+.... ........+.+++. |...... .+..|
T Consensus 171 ~Ii~d~~~~~~~~~~l~~~~~l~-~~~~~LkpgG~lv~~~--~~~~~~---~~~~~~~~~~l~~~-f~~v~~~~~~vP~~ 243 (304)
T 2o07_A 171 VIITDSSDPMGPAESLFKESYYQ-LMKTALKEDGVLCCQG--ECQWLH---LDLIKEMRQFCQSL-FPVVAYAYCTIPTY 243 (304)
T ss_dssp EEEEECC-----------CHHHH-HHHHHEEEEEEEEEEE--ECTTTC---HHHHHHHHHHHHHH-CSEEEEEEEECTTS
T ss_pred EEEECCCCCCCcchhhhHHHHHH-HHHhccCCCeEEEEec--CCcccc---hHHHHHHHHHHHHh-CCCceeEEEEeccc
Confidence 9999988542 234565 8999999999999976 221111 12222223334333 5544433 35555
Q ss_pred C-CceEEEEEEEc
Q 021911 287 E-RDHACVVGGYR 298 (305)
Q Consensus 287 ~-~~~~~vv~~~~ 298 (305)
. .+..++++.+.
T Consensus 244 ~~g~~g~~~as~~ 256 (304)
T 2o07_A 244 PSGQIGFMLCSKN 256 (304)
T ss_dssp GGGEEEEEEEESS
T ss_pred cCcceEEEEEeCC
Confidence 3 33456667654
|
| >3gwz_A MMCR; methyltransferase, mitomycin, S-adenosyl methionine, transferase; HET: MSE SAH; 1.91A {Streptomyces lavendulae} PDB: 3gxo_A* | Back alignment and structure |
|---|
Probab=99.34 E-value=5.5e-11 Score=111.09 Aligned_cols=146 Identities=14% Similarity=0.066 Sum_probs=99.7
Q ss_pred CCCCCCEEEEEecCCCccHHHHHhhhCCCcEEEEEeCChHHHHHHHHHHHcC---CCeEEEEccCCCCcccccCCCcEeE
Q 021911 140 WIKPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKR---TNVIPIIEDARHPAKYRMLVGMVDV 216 (305)
Q Consensus 140 ~~~~g~~VLDlG~G~G~~t~~la~~~~~~~~V~avD~s~~~~~~l~~~a~~~---~nI~~~~~D~~~~~~~~~~~~~fD~ 216 (305)
...+..+|||+|||+|.++..+++.+ +..+++++|+ +..+..+.+.+.+. ++|+++..|+..+. +..||+
T Consensus 199 ~~~~~~~vlDvG~G~G~~~~~l~~~~-p~~~~~~~D~-~~~~~~a~~~~~~~~l~~~v~~~~~d~~~~~-----p~~~D~ 271 (369)
T 3gwz_A 199 DFSGAATAVDIGGGRGSLMAAVLDAF-PGLRGTLLER-PPVAEEARELLTGRGLADRCEILPGDFFETI-----PDGADV 271 (369)
T ss_dssp CCTTCSEEEEETCTTSHHHHHHHHHC-TTCEEEEEEC-HHHHHHHHHHHHHTTCTTTEEEEECCTTTCC-----CSSCSE
T ss_pred CCccCcEEEEeCCCccHHHHHHHHHC-CCCeEEEEcC-HHHHHHHHHhhhhcCcCCceEEeccCCCCCC-----CCCceE
Confidence 45677999999999999999999985 6779999999 85555555444432 57999999998432 238999
Q ss_pred EEEeCC---Chh--HHHHHHHHHhccCCCCcEEEEEEcccccCCCCchhh-h---------------HHHHHHHHHHCCC
Q 021911 217 IFSDVA---QPD--QARILALNASYFLKAGGHFVISIKANCIDSTVPAEA-V---------------FQSEVKKLQQDQF 275 (305)
Q Consensus 217 V~~d~~---~~~--~~~~l~~~a~~~LkpGG~lv~s~~~~~i~~~~~~~~-v---------------~~~~~~~l~~~Gf 275 (305)
|++... .++ ..+++. ++++.|||||+|++.... .+....+.. . ..+..+.|+++||
T Consensus 272 v~~~~vlh~~~d~~~~~~L~-~~~~~L~pgG~l~i~e~~--~~~~~~~~~~~~d~~~~~~~~g~~~t~~e~~~ll~~aGf 348 (369)
T 3gwz_A 272 YLIKHVLHDWDDDDVVRILR-RIATAMKPDSRLLVIDNL--IDERPAASTLFVDLLLLVLVGGAERSESEFAALLEKSGL 348 (369)
T ss_dssp EEEESCGGGSCHHHHHHHHH-HHHTTCCTTCEEEEEEEB--CCSSCCHHHHHHHHHHHHHHSCCCBCHHHHHHHHHTTTE
T ss_pred EEhhhhhccCCHHHHHHHHH-HHHHHcCCCCEEEEEEec--cCCCCCCchhHhhHHHHhhcCCccCCHHHHHHHHHHCCC
Confidence 998555 222 336776 999999999999998632 111111110 0 1122355688999
Q ss_pred cEeEEeecCCCCCceEEEEEEE
Q 021911 276 KPFEQVTLEPFERDHACVVGGY 297 (305)
Q Consensus 276 ~~~e~~~l~p~~~~~~~vv~~~ 297 (305)
+++++..+. ...+.++.+++
T Consensus 349 ~~~~~~~~~--~~~~svie~~~ 368 (369)
T 3gwz_A 349 RVERSLPCG--AGPVRIVEIRR 368 (369)
T ss_dssp EEEEEEECS--SSSEEEEEEEE
T ss_pred eEEEEEECC--CCCcEEEEEEe
Confidence 999887532 22355565553
|
| >3i53_A O-methyltransferase; CO-complex, rossmann-like fold; HET: SAH; 2.08A {Streptomyces carzinostaticus subsp} PDB: 3i58_A* 3i5u_A* 3i64_A* | Back alignment and structure |
|---|
Probab=99.34 E-value=2.4e-11 Score=111.69 Aligned_cols=149 Identities=8% Similarity=-0.049 Sum_probs=100.8
Q ss_pred cccCCCCCCEEEEEecCCCccHHHHHhhhCCCcEEEEEeCChHHHHHHHHHHHcC---CCeEEEEccCCCCcccccCCCc
Q 021911 137 DNIWIKPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKR---TNVIPIIEDARHPAKYRMLVGM 213 (305)
Q Consensus 137 ~~~~~~~g~~VLDlG~G~G~~t~~la~~~~~~~~V~avD~s~~~~~~l~~~a~~~---~nI~~~~~D~~~~~~~~~~~~~ 213 (305)
+.+...+..+|||+|||+|.++..+++.+ +..+++++|+ +..+....+.+.+. ++|+++..|+.++. +..
T Consensus 163 ~~~~~~~~~~vlDvG~G~G~~~~~l~~~~-p~~~~~~~D~-~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~-----p~~ 235 (332)
T 3i53_A 163 AKYDWAALGHVVDVGGGSGGLLSALLTAH-EDLSGTVLDL-QGPASAAHRRFLDTGLSGRAQVVVGSFFDPL-----PAG 235 (332)
T ss_dssp GSSCCGGGSEEEEETCTTSHHHHHHHHHC-TTCEEEEEEC-HHHHHHHHHHHHHTTCTTTEEEEECCTTSCC-----CCS
T ss_pred HhCCCCCCCEEEEeCCChhHHHHHHHHHC-CCCeEEEecC-HHHHHHHHHhhhhcCcCcCeEEecCCCCCCC-----CCC
Confidence 33344567899999999999999999986 5679999999 85555555444432 67999999997432 238
Q ss_pred EeEEEEeCC---Ch--hHHHHHHHHHhccCCCCcEEEEEEcccccCCCCchhhh------------HHHHHHHHHHCCCc
Q 021911 214 VDVIFSDVA---QP--DQARILALNASYFLKAGGHFVISIKANCIDSTVPAEAV------------FQSEVKKLQQDQFK 276 (305)
Q Consensus 214 fD~V~~d~~---~~--~~~~~l~~~a~~~LkpGG~lv~s~~~~~i~~~~~~~~v------------~~~~~~~l~~~Gf~ 276 (305)
||+|++... .+ +..+++. ++++.|||||+|++................ ..+..+.|+++||+
T Consensus 236 ~D~v~~~~vlh~~~~~~~~~~l~-~~~~~L~pgG~l~i~e~~~~~~~~~~~~d~~~~~~~~~~~~t~~e~~~ll~~aGf~ 314 (332)
T 3i53_A 236 AGGYVLSAVLHDWDDLSAVAILR-RCAEAAGSGGVVLVIEAVAGDEHAGTGMDLRMLTYFGGKERSLAELGELAAQAGLA 314 (332)
T ss_dssp CSEEEEESCGGGSCHHHHHHHHH-HHHHHHTTTCEEEEEECCCC---CCHHHHHHHHHHHSCCCCCHHHHHHHHHHTTEE
T ss_pred CcEEEEehhhccCCHHHHHHHHH-HHHHhcCCCCEEEEEeecCCCCCccHHHHHHHHhhCCCCCCCHHHHHHHHHHCCCE
Confidence 999998554 22 3467776 999999999999998732111100000000 11223566899999
Q ss_pred EeEEeecCCCCCceEEEEEEE
Q 021911 277 PFEQVTLEPFERDHACVVGGY 297 (305)
Q Consensus 277 ~~e~~~l~p~~~~~~~vv~~~ 297 (305)
.+++..+.+ +.++.+++
T Consensus 315 ~~~~~~~~~----~~vie~r~ 331 (332)
T 3i53_A 315 VRAAHPISY----VSIVEMTA 331 (332)
T ss_dssp EEEEEECSS----SEEEEEEE
T ss_pred EEEEEECCC----cEEEEEee
Confidence 998876644 56666553
|
| >2vdw_A Vaccinia virus capping enzyme D1 subunit; nucleotidyltransferase, S-adenosyl-L-methionine, RNA metabolism, mRNA processing, methyltransferase, poxvirus; HET: SAH; 2.70A {Vaccinia virus} | Back alignment and structure |
|---|
Probab=99.34 E-value=4.9e-12 Score=115.34 Aligned_cols=105 Identities=16% Similarity=0.092 Sum_probs=74.4
Q ss_pred CCCCEEEEEecCCCccHHHHHhhhCCCcEEEEEeCChHHHHHHHHHHHcCC--------CeEEEEccCCCCcc-----cc
Q 021911 142 KPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKRT--------NVIPIIEDARHPAK-----YR 208 (305)
Q Consensus 142 ~~g~~VLDlG~G~G~~t~~la~~~~~~~~V~avD~s~~~~~~l~~~a~~~~--------nI~~~~~D~~~~~~-----~~ 208 (305)
.++.+|||||||+|..+..++.. ...+|+++|+|+.+++.+.+.+.... ++.+++.|+..... ..
T Consensus 47 ~~~~~VLDlGCG~G~~l~~~~~~--~~~~v~GiD~S~~~l~~A~~~~~~~~~~~~~~~~~~~f~~~d~~~d~~~~~l~~~ 124 (302)
T 2vdw_A 47 SNKRKVLAIDFGNGADLEKYFYG--EIALLVATDPDADAIARGNERYNKLNSGIKTKYYKFDYIQETIRSDTFVSSVREV 124 (302)
T ss_dssp CSCCEEEETTCTTTTTHHHHHHT--TCSEEEEEESCHHHHHHHHHHHHHHCC----CCCEEEEEECCTTSSSHHHHHHTT
T ss_pred CCCCeEEEEecCCcHhHHHHHhc--CCCeEEEEECCHHHHHHHHHHHHhccccccccccccchhhhhcccchhhhhhhcc
Confidence 35789999999999877766654 33589999999966555554443221 26788888843220 01
Q ss_pred cCCCcEeEEEEeCCC------hhHHHHHHHHHhccCCCCcEEEEEEc
Q 021911 209 MLVGMVDVIFSDVAQ------PDQARILALNASYFLKAGGHFVISIK 249 (305)
Q Consensus 209 ~~~~~fD~V~~d~~~------~~~~~~l~~~a~~~LkpGG~lv~s~~ 249 (305)
...++||+|+|.... .++..++. +++++|||||+|++++.
T Consensus 125 ~~~~~FD~V~~~~~lhy~~~~~~~~~~l~-~~~r~LkpGG~~i~~~~ 170 (302)
T 2vdw_A 125 FYFGKFNIIDWQFAIHYSFHPRHYATVMN-NLSELTASGGKVLITTM 170 (302)
T ss_dssp CCSSCEEEEEEESCGGGTCSTTTHHHHHH-HHHHHEEEEEEEEEEEE
T ss_pred ccCCCeeEEEECchHHHhCCHHHHHHHHH-HHHHHcCCCCEEEEEeC
Confidence 234699999986541 35566776 99999999999999885
|
| >2i7c_A Spermidine synthase; transferase, structural genomics consor; HET: AAT 1PG; 1.71A {Plasmodium falciparum} PDB: 2hte_A* 3b7p_A* 3rie_A* 2pwp_A* | Back alignment and structure |
|---|
Probab=99.34 E-value=6e-11 Score=107.08 Aligned_cols=147 Identities=16% Similarity=0.146 Sum_probs=100.0
Q ss_pred CCCCEEEEEecCCCccHHHHHhhhCCCcEEEEEeCChHHHHHHHHHHHc------CCCeEEEEccCCCCcccccCCCcEe
Q 021911 142 KPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKK------RTNVIPIIEDARHPAKYRMLVGMVD 215 (305)
Q Consensus 142 ~~g~~VLDlG~G~G~~t~~la~~~~~~~~V~avD~s~~~~~~l~~~a~~------~~nI~~~~~D~~~~~~~~~~~~~fD 215 (305)
.+..+|||||||+|.++..+++.. +..+|++||+++..++.+.+.... .+++++++.|+...... ..++||
T Consensus 77 ~~~~~VLdiG~G~G~~~~~l~~~~-~~~~v~~vDid~~~i~~a~~~~~~~~~~~~~~~v~~~~~D~~~~l~~--~~~~fD 153 (283)
T 2i7c_A 77 KEPKNVLVVGGGDGGIIRELCKYK-SVENIDICEIDETVIEVSKIYFKNISCGYEDKRVNVFIEDASKFLEN--VTNTYD 153 (283)
T ss_dssp SSCCEEEEEECTTSHHHHHHTTCT-TCCEEEEEESCHHHHHHHHHHCTTTSGGGGSTTEEEEESCHHHHHHH--CCSCEE
T ss_pred CCCCeEEEEeCCcCHHHHHHHHcC-CCCEEEEEECCHHHHHHHHHHhHHhccccCCCcEEEEECChHHHHHh--CCCCce
Confidence 345899999999999999999763 456999999999655555444332 26899999998764322 246899
Q ss_pred EEEEeCCChh----H---HHHHHHHHhccCCCCcEEEEEEcccccCCCCchhhhHHHHHHHHHHCCCcEeEE--eecCCC
Q 021911 216 VIFSDVAQPD----Q---ARILALNASYFLKAGGHFVISIKANCIDSTVPAEAVFQSEVKKLQQDQFKPFEQ--VTLEPF 286 (305)
Q Consensus 216 ~V~~d~~~~~----~---~~~l~~~a~~~LkpGG~lv~s~~~~~i~~~~~~~~v~~~~~~~l~~~Gf~~~e~--~~l~p~ 286 (305)
+|++|.+.+. . .+.+. ++.++|||||.|++.+ .+... ....+....+.+++. |...+. ..+..|
T Consensus 154 ~Ii~d~~~~~~~~~~l~~~~~l~-~~~~~L~pgG~lv~~~--~~~~~---~~~~~~~~~~~l~~~-F~~v~~~~~~vP~y 226 (283)
T 2i7c_A 154 VIIVDSSDPIGPAETLFNQNFYE-KIYNALKPNGYCVAQC--ESLWI---HVGTIKNMIGYAKKL-FKKVEYANISIPTY 226 (283)
T ss_dssp EEEEECCCTTTGGGGGSSHHHHH-HHHHHEEEEEEEEEEC--CCTTT---CHHHHHHHHHHHHTT-CSEEEEEEEECTTS
T ss_pred EEEEcCCCCCCcchhhhHHHHHH-HHHHhcCCCcEEEEEC--CCccc---CHHHHHHHHHHHHHH-CCceEEEEEEcCCc
Confidence 9999886431 1 46666 9999999999999986 22111 112234445566555 776553 345556
Q ss_pred CCce-EEEEEEEc
Q 021911 287 ERDH-ACVVGGYR 298 (305)
Q Consensus 287 ~~~~-~~vv~~~~ 298 (305)
...+ .++++.+.
T Consensus 227 ~~g~~g~~~~s~~ 239 (283)
T 2i7c_A 227 PCGCIGILCCSKT 239 (283)
T ss_dssp GGGEEEEEEEESS
T ss_pred CCCcEEEEEEeCC
Confidence 5444 56666654
|
| >3gjy_A Spermidine synthase; APC62791, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.47A {Corynebacterium glutamicum atcc 13032} | Back alignment and structure |
|---|
Probab=99.34 E-value=3.5e-12 Score=116.68 Aligned_cols=143 Identities=19% Similarity=0.192 Sum_probs=98.9
Q ss_pred CEEEEEecCCCccHHHHHhhhCCCcEEEEEeCChHHHHHHHHHHHcC------CCeEEEEccCCCCcccccCCCcEeEEE
Q 021911 145 ARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKR------TNVIPIIEDARHPAKYRMLVGMVDVIF 218 (305)
Q Consensus 145 ~~VLDlG~G~G~~t~~la~~~~~~~~V~avD~s~~~~~~l~~~a~~~------~nI~~~~~D~~~~~~~~~~~~~fD~V~ 218 (305)
.+|||||||+|.++..+++.+ +..+|++||+++ .+++.++++ +++++++.|+...... ....+||+||
T Consensus 91 ~rVLdIG~G~G~la~~la~~~-p~~~v~~VEidp----~vi~~Ar~~~~~~~~~rv~v~~~Da~~~l~~-~~~~~fDvIi 164 (317)
T 3gjy_A 91 LRITHLGGGACTMARYFADVY-PQSRNTVVELDA----ELARLSREWFDIPRAPRVKIRVDDARMVAES-FTPASRDVII 164 (317)
T ss_dssp CEEEEESCGGGHHHHHHHHHS-TTCEEEEEESCH----HHHHHHHHHSCCCCTTTEEEEESCHHHHHHT-CCTTCEEEEE
T ss_pred CEEEEEECCcCHHHHHHHHHC-CCcEEEEEECCH----HHHHHHHHhccccCCCceEEEECcHHHHHhh-ccCCCCCEEE
Confidence 499999999999999999965 566999999999 555555432 5799999998765321 1246899999
Q ss_pred EeCCChh-------HHHHHHHHHhccCCCCcEEEEEEcccccCCCCchhhhHHHHHHHHHHCCCcEeEEeecC----CCC
Q 021911 219 SDVAQPD-------QARILALNASYFLKAGGHFVISIKANCIDSTVPAEAVFQSEVKKLQQDQFKPFEQVTLE----PFE 287 (305)
Q Consensus 219 ~d~~~~~-------~~~~l~~~a~~~LkpGG~lv~s~~~~~i~~~~~~~~v~~~~~~~l~~~Gf~~~e~~~l~----p~~ 287 (305)
+|...+. ..+.+. +++++|||+|.|++.+. + . . ....+...+..|++. |.....+... ..+
T Consensus 165 ~D~~~~~~~~~~L~t~efl~-~~~r~LkpgGvlv~~~~--~--~-~-~~~~~~~~~~tL~~v-F~~v~~~~~~~~~~g~~ 236 (317)
T 3gjy_A 165 RDVFAGAITPQNFTTVEFFE-HCHRGLAPGGLYVANCG--D--H-S-DLRGAKSELAGMMEV-FEHVAVIADPPMLKGRR 236 (317)
T ss_dssp ECCSTTSCCCGGGSBHHHHH-HHHHHEEEEEEEEEEEE--E--C-T-TCHHHHHHHHHHHHH-CSEEEEEECHHHHTTSS
T ss_pred ECCCCccccchhhhHHHHHH-HHHHhcCCCcEEEEEec--C--C-c-chHHHHHHHHHHHHH-CCceEEEEecCCCCCCc
Confidence 9876321 246666 89999999999998872 1 1 1 122344556666655 7666555421 123
Q ss_pred CceEEEEEEEcCCC
Q 021911 288 RDHACVVGGYRMPK 301 (305)
Q Consensus 288 ~~~~~vv~~~~~~~ 301 (305)
..+.++++.+...+
T Consensus 237 ~gN~Vl~As~~plp 250 (317)
T 3gjy_A 237 YGNIILMGSDTEFF 250 (317)
T ss_dssp CEEEEEEEESSCCC
T ss_pred CceEEEEEECCCCC
Confidence 45777888766544
|
| >3bgv_A MRNA CAP guanine-N7 methyltransferase; alternative splicing, mRNA capping, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: SAH; 2.30A {Homo sapiens} PDB: 3epp_A* | Back alignment and structure |
|---|
Probab=99.33 E-value=5.2e-12 Score=115.10 Aligned_cols=121 Identities=18% Similarity=0.125 Sum_probs=84.8
Q ss_pred hhHHHHHHHccccccCCCCCCEEEEEecCCCccHHHHHhhhCCCcEEEEEeCChHHHHHHHHHHHc---------CCCeE
Q 021911 125 RSKLAAAVLGGVDNIWIKPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKK---------RTNVI 195 (305)
Q Consensus 125 ~s~l~a~ll~~l~~~~~~~g~~VLDlG~G~G~~t~~la~~~~~~~~V~avD~s~~~~~~l~~~a~~---------~~nI~ 195 (305)
.+.+...++..+.. ...+..+|||+|||+|.++..+++. +..+|+++|+|+.++..+.+.... ..++.
T Consensus 17 k~~l~~~~~~~l~~-~~~~~~~VLDlGcG~G~~~~~l~~~--~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~ 93 (313)
T 3bgv_A 17 KSVLIGEFLEKVRQ-KKKRDITVLDLGCGKGGDLLKWKKG--RINKLVCTDIADVSVKQCQQRYEDMKNRRDSEYIFSAE 93 (313)
T ss_dssp HHHHHHHHHHHHHH-TC--CCEEEEETCTTTTTHHHHHHT--TCSEEEEEESCHHHHHHHHHHHHHHHSSSCC-CCCEEE
T ss_pred HHHHHHHHHHHhhh-ccCCCCEEEEECCCCcHHHHHHHhc--CCCEEEEEeCCHHHHHHHHHHHHHhhhcccccccceEE
Confidence 34444444443321 2346789999999999999999985 456999999999665555444432 13799
Q ss_pred EEEccCCCCcc---cccCCCcEeEEEEeCCC-------hhHHHHHHHHHhccCCCCcEEEEEEc
Q 021911 196 PIIEDARHPAK---YRMLVGMVDVIFSDVAQ-------PDQARILALNASYFLKAGGHFVISIK 249 (305)
Q Consensus 196 ~~~~D~~~~~~---~~~~~~~fD~V~~d~~~-------~~~~~~l~~~a~~~LkpGG~lv~s~~ 249 (305)
+++.|+...+. ......+||+|++.... ++...++. ++.++|||||.|+++++
T Consensus 94 ~~~~D~~~~~~~~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~-~~~~~LkpgG~li~~~~ 156 (313)
T 3bgv_A 94 FITADSSKELLIDKFRDPQMCFDICSCQFVCHYSFESYEQADMMLR-NACERLSPGGYFIGTTP 156 (313)
T ss_dssp EEECCTTTSCSTTTCSSTTCCEEEEEEETCGGGGGGSHHHHHHHHH-HHHTTEEEEEEEEEEEE
T ss_pred EEEecccccchhhhcccCCCCEEEEEEecchhhccCCHHHHHHHHH-HHHHHhCCCcEEEEecC
Confidence 99999987641 11123489999997763 23456666 99999999999999984
|
| >2yxe_A Protein-L-isoaspartate O-methyltransferase; rossman-type fold, alpha/beta/alpha sandwich structure, STRU genomics, NPPSFA; 2.00A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=99.33 E-value=9.6e-12 Score=106.78 Aligned_cols=102 Identities=26% Similarity=0.402 Sum_probs=79.3
Q ss_pred CCCCCCEEEEEecCCCccHHHHHhhhCCCcEEEEEeCChHHHHHHHHHHHcC--CCeEEEEccCCCCcccccCCCcEeEE
Q 021911 140 WIKPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKR--TNVIPIIEDARHPAKYRMLVGMVDVI 217 (305)
Q Consensus 140 ~~~~g~~VLDlG~G~G~~t~~la~~~~~~~~V~avD~s~~~~~~l~~~a~~~--~nI~~~~~D~~~~~~~~~~~~~fD~V 217 (305)
.+.++.+|||+|||+|.++..+++..++..+|+++|+|+..+..+.+..... +++.+++.|+..... ...+||+|
T Consensus 74 ~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~---~~~~fD~v 150 (215)
T 2yxe_A 74 DLKPGMKVLEIGTGCGYHAAVTAEIVGEDGLVVSIERIPELAEKAERTLRKLGYDNVIVIVGDGTLGYE---PLAPYDRI 150 (215)
T ss_dssp TCCTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHHTCTTEEEEESCGGGCCG---GGCCEEEE
T ss_pred CCCCCCEEEEECCCccHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCeEEEECCcccCCC---CCCCeeEE
Confidence 5678899999999999999999999866679999999996655555444332 579999999854332 14689999
Q ss_pred EEeCCChhHHHHHHHHHhccCCCCcEEEEEE
Q 021911 218 FSDVAQPDQARILALNASYFLKAGGHFVISI 248 (305)
Q Consensus 218 ~~d~~~~~~~~~l~~~a~~~LkpGG~lv~s~ 248 (305)
+++.+..... . ++.++|||||+|++++
T Consensus 151 ~~~~~~~~~~---~-~~~~~L~pgG~lv~~~ 177 (215)
T 2yxe_A 151 YTTAAGPKIP---E-PLIRQLKDGGKLLMPV 177 (215)
T ss_dssp EESSBBSSCC---H-HHHHTEEEEEEEEEEE
T ss_pred EECCchHHHH---H-HHHHHcCCCcEEEEEE
Confidence 9987744322 2 6678999999999997
|
| >1x19_A CRTF-related protein; methyltransferase, bacteriochllochlorophyll, BCHU, SAM, SAH, adenosylmethyonine, S-adenosylhomocysteine, ADO-Met; 2.27A {Chlorobium tepidum} PDB: 1x1a_A* 1x1b_A* 1x1c_A* 1x1d_A* | Back alignment and structure |
|---|
Probab=99.33 E-value=3e-11 Score=112.25 Aligned_cols=146 Identities=12% Similarity=0.024 Sum_probs=101.1
Q ss_pred CCCCCCEEEEEecCCCccHHHHHhhhCCCcEEEEEeCChHHHHHHHHHHHcC---CCeEEEEccCCCCcccccCCCcEeE
Q 021911 140 WIKPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKR---TNVIPIIEDARHPAKYRMLVGMVDV 216 (305)
Q Consensus 140 ~~~~g~~VLDlG~G~G~~t~~la~~~~~~~~V~avD~s~~~~~~l~~~a~~~---~nI~~~~~D~~~~~~~~~~~~~fD~ 216 (305)
...+..+|||+|||+|.++..+++.. +..+|+++|+ +..++.+.+.+++. .+|+++..|+.+.+. ..+|+
T Consensus 187 ~~~~~~~vLDvG~G~G~~~~~l~~~~-p~~~~~~~D~-~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~-----~~~D~ 259 (359)
T 1x19_A 187 KLDGVKKMIDVGGGIGDISAAMLKHF-PELDSTILNL-PGAIDLVNENAAEKGVADRMRGIAVDIYKESY-----PEADA 259 (359)
T ss_dssp CCTTCCEEEEESCTTCHHHHHHHHHC-TTCEEEEEEC-GGGHHHHHHHHHHTTCTTTEEEEECCTTTSCC-----CCCSE
T ss_pred CCCCCCEEEEECCcccHHHHHHHHHC-CCCeEEEEec-HHHHHHHHHHHHhcCCCCCEEEEeCccccCCC-----CCCCE
Confidence 46678999999999999999999986 5679999999 86666655555443 359999999987631 23499
Q ss_pred EEEeCC---Chh--HHHHHHHHHhccCCCCcEEEEEEcccccCCCCc-------------h-h----hhHHHHHHHHHHC
Q 021911 217 IFSDVA---QPD--QARILALNASYFLKAGGHFVISIKANCIDSTVP-------------A-E----AVFQSEVKKLQQD 273 (305)
Q Consensus 217 V~~d~~---~~~--~~~~l~~~a~~~LkpGG~lv~s~~~~~i~~~~~-------------~-~----~v~~~~~~~l~~~ 273 (305)
|++... .++ ..+++. ++.+.|||||+|++............ . . .-..+..+.|+++
T Consensus 260 v~~~~vlh~~~d~~~~~~l~-~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~t~~e~~~ll~~a 338 (359)
T 1x19_A 260 VLFCRILYSANEQLSTIMCK-KAFDAMRSGGRLLILDMVIDDPENPNFDYLSHYILGAGMPFSVLGFKEQARYKEILESL 338 (359)
T ss_dssp EEEESCGGGSCHHHHHHHHH-HHHTTCCTTCEEEEEEECCCCTTSCCHHHHHHHGGGGGSSCCCCCCCCGGGHHHHHHHH
T ss_pred EEEechhccCCHHHHHHHHH-HHHHhcCCCCEEEEEecccCCCCCchHHHHHHHHHhcCCCCcccCCCCHHHHHHHHHHC
Confidence 998665 223 566676 99999999999988763211100000 0 0 0111224566889
Q ss_pred CCcEeEEeecCCCCCceEEEEEEE
Q 021911 274 QFKPFEQVTLEPFERDHACVVGGY 297 (305)
Q Consensus 274 Gf~~~e~~~l~p~~~~~~~vv~~~ 297 (305)
||+.++...+. .+.++++++
T Consensus 339 Gf~~v~~~~~~----~~~vi~a~k 358 (359)
T 1x19_A 339 GYKDVTMVRKY----DHLLVQAVK 358 (359)
T ss_dssp TCEEEEEEEET----TEEEEEEEC
T ss_pred CCceEEEEecC----CceEEEEeC
Confidence 99999887765 466777765
|
| >2yx1_A Hypothetical protein MJ0883; methyl transferase, tRNA modification enzyme, transferase; HET: SFG; 2.20A {Methanocaldococcus jannaschii} PDB: 2zzn_A* 3ay0_A* 2zzm_A* | Back alignment and structure |
|---|
Probab=99.33 E-value=5.6e-12 Score=116.58 Aligned_cols=96 Identities=16% Similarity=0.185 Sum_probs=79.3
Q ss_pred CCCCCEEEEEecCCCccHHHHHhhhCCCcEEEEEeCChHHHHHHHHHHHcC---CCeEEEEccCCCCcccccCCCcEeEE
Q 021911 141 IKPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKR---TNVIPIIEDARHPAKYRMLVGMVDVI 217 (305)
Q Consensus 141 ~~~g~~VLDlG~G~G~~t~~la~~~~~~~~V~avD~s~~~~~~l~~~a~~~---~nI~~~~~D~~~~~~~~~~~~~fD~V 217 (305)
+.++.+|||+|||+|.++.+ |.. ..+|+++|+|+.+++.+.++++.+ .++.+++.|+.+.. .+||+|
T Consensus 193 ~~~~~~VLDlg~G~G~~~l~-a~~---~~~V~~vD~s~~ai~~a~~n~~~n~l~~~v~~~~~D~~~~~------~~fD~V 262 (336)
T 2yx1_A 193 VSLNDVVVDMFAGVGPFSIA-CKN---AKKIYAIDINPHAIELLKKNIKLNKLEHKIIPILSDVREVD------VKGNRV 262 (336)
T ss_dssp CCTTCEEEETTCTTSHHHHH-TTT---SSEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCGGGCC------CCEEEE
T ss_pred cCCCCEEEEccCccCHHHHh-ccC---CCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECChHHhc------CCCcEE
Confidence 45789999999999999999 762 569999999998887777777655 47999999997653 689999
Q ss_pred EEeCCChhHHHHHHHHHhccCCCCcEEEEEE
Q 021911 218 FSDVAQPDQARILALNASYFLKAGGHFVISI 248 (305)
Q Consensus 218 ~~d~~~~~~~~~l~~~a~~~LkpGG~lv~s~ 248 (305)
++|+|... .+++. .+.++|+|+|.|++++
T Consensus 263 i~dpP~~~-~~~l~-~~~~~L~~gG~l~~~~ 291 (336)
T 2yx1_A 263 IMNLPKFA-HKFID-KALDIVEEGGVIHYYT 291 (336)
T ss_dssp EECCTTTG-GGGHH-HHHHHEEEEEEEEEEE
T ss_pred EECCcHhH-HHHHH-HHHHHcCCCCEEEEEE
Confidence 99987433 25555 8889999999999986
|
| >3ggd_A SAM-dependent methyltransferase; YP_325210.1, structural GEN joint center for structural genomics, JCSG; HET: SAH; 2.11A {Anabaena variabilis atcc 29413} | Back alignment and structure |
|---|
Probab=99.33 E-value=2.9e-12 Score=112.24 Aligned_cols=104 Identities=13% Similarity=0.119 Sum_probs=78.5
Q ss_pred CCCCCCEEEEEecCCCccHHHHHhhhCCCcEEEEEeCChHHHHHHHHHHHcCCCeEEEEccCCCCcccccC--CCcEeEE
Q 021911 140 WIKPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKRTNVIPIIEDARHPAKYRML--VGMVDVI 217 (305)
Q Consensus 140 ~~~~g~~VLDlG~G~G~~t~~la~~~~~~~~V~avD~s~~~~~~l~~~a~~~~nI~~~~~D~~~~~~~~~~--~~~fD~V 217 (305)
.+.++.+|||+|||+|.++..+++... +|++||+|+.++..+.+.+ ...++.+++.|+.++...... ...||+|
T Consensus 53 ~~~~~~~vLD~GcG~G~~~~~la~~~~---~v~gvD~s~~~~~~a~~~~-~~~~~~~~~~d~~~~~~~~~~~~~~~~d~v 128 (245)
T 3ggd_A 53 LFNPELPLIDFACGNGTQTKFLSQFFP---RVIGLDVSKSALEIAAKEN-TAANISYRLLDGLVPEQAAQIHSEIGDANI 128 (245)
T ss_dssp TSCTTSCEEEETCTTSHHHHHHHHHSS---CEEEEESCHHHHHHHHHHS-CCTTEEEEECCTTCHHHHHHHHHHHCSCEE
T ss_pred ccCCCCeEEEEcCCCCHHHHHHHHhCC---CEEEEECCHHHHHHHHHhC-cccCceEEECcccccccccccccccCccEE
Confidence 357789999999999999999999842 8999999995444443333 125899999999886432111 1248999
Q ss_pred EEeCC---Ch--hHHHHHHHHHhccCCCCcEEEEEE
Q 021911 218 FSDVA---QP--DQARILALNASYFLKAGGHFVISI 248 (305)
Q Consensus 218 ~~d~~---~~--~~~~~l~~~a~~~LkpGG~lv~s~ 248 (305)
+++.. .+ +...++. ++.++|||||+|+++.
T Consensus 129 ~~~~~~~~~~~~~~~~~l~-~~~~~LkpgG~l~i~~ 163 (245)
T 3ggd_A 129 YMRTGFHHIPVEKRELLGQ-SLRILLGKQGAMYLIE 163 (245)
T ss_dssp EEESSSTTSCGGGHHHHHH-HHHHHHTTTCEEEEEE
T ss_pred EEcchhhcCCHHHHHHHHH-HHHHHcCCCCEEEEEe
Confidence 99765 22 5667776 9999999999988876
|
| >1tw3_A COMT, carminomycin 4-O-methyltransferase; anthracycline, methylate, tailoring enzyme, polyketide, S-adenosyl-L-homocystein; HET: SAH ERT; 2.35A {Streptomyces peucetius} SCOP: a.4.5.29 c.66.1.12 PDB: 1tw2_A* | Back alignment and structure |
|---|
Probab=99.32 E-value=4.2e-11 Score=111.09 Aligned_cols=150 Identities=17% Similarity=0.092 Sum_probs=102.3
Q ss_pred CCCCCCEEEEEecCCCccHHHHHhhhCCCcEEEEEeCChHHHHHHHHHHHcC---CCeEEEEccCCCCcccccCCCcEeE
Q 021911 140 WIKPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKR---TNVIPIIEDARHPAKYRMLVGMVDV 216 (305)
Q Consensus 140 ~~~~g~~VLDlG~G~G~~t~~la~~~~~~~~V~avD~s~~~~~~l~~~a~~~---~nI~~~~~D~~~~~~~~~~~~~fD~ 216 (305)
.+.+..+|||+|||+|.++..+++.. +..+++++|+ +..++.+.+.+... .+|++++.|+.+.. +..||+
T Consensus 180 ~~~~~~~vLDvG~G~G~~~~~l~~~~-~~~~~~~~D~-~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~-----~~~~D~ 252 (360)
T 1tw3_A 180 DWTNVRHVLDVGGGKGGFAAAIARRA-PHVSATVLEM-AGTVDTARSYLKDEGLSDRVDVVEGDFFEPL-----PRKADA 252 (360)
T ss_dssp CCTTCSEEEEETCTTSHHHHHHHHHC-TTCEEEEEEC-TTHHHHHHHHHHHTTCTTTEEEEECCTTSCC-----SSCEEE
T ss_pred CCccCcEEEEeCCcCcHHHHHHHHhC-CCCEEEEecC-HHHHHHHHHHHHhcCCCCceEEEeCCCCCCC-----CCCccE
Confidence 45678999999999999999999985 5679999999 86665555554443 48999999997532 235999
Q ss_pred EEEeCCC---hh--HHHHHHHHHhccCCCCcEEEEEEcc-cccCCCCchhh-h---------------HHHHHHHHHHCC
Q 021911 217 IFSDVAQ---PD--QARILALNASYFLKAGGHFVISIKA-NCIDSTVPAEA-V---------------FQSEVKKLQQDQ 274 (305)
Q Consensus 217 V~~d~~~---~~--~~~~l~~~a~~~LkpGG~lv~s~~~-~~i~~~~~~~~-v---------------~~~~~~~l~~~G 274 (305)
|++.... ++ ..+++. ++.++|||||+|++.... .... ...... . ..+..+.|+++|
T Consensus 253 v~~~~vl~~~~~~~~~~~l~-~~~~~L~pgG~l~i~e~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~t~~e~~~ll~~aG 330 (360)
T 1tw3_A 253 IILSFVLLNWPDHDAVRILT-RCAEALEPGGRILIHERDDLHEN-SFNEQFTELDLRMLVFLGGALRTREKWDGLAASAG 330 (360)
T ss_dssp EEEESCGGGSCHHHHHHHHH-HHHHTEEEEEEEEEEECCBCGGG-CCSHHHHHHHHHHHHHHSCCCCBHHHHHHHHHHTT
T ss_pred EEEcccccCCCHHHHHHHHH-HHHHhcCCCcEEEEEEEeccCCC-CCcchhhhccHHHhhhcCCcCCCHHHHHHHHHHCC
Confidence 9986552 22 346676 999999999999998732 1111 111100 0 111235568899
Q ss_pred CcEeEEeecCCC--CCceEEEEEEEc
Q 021911 275 FKPFEQVTLEPF--ERDHACVVGGYR 298 (305)
Q Consensus 275 f~~~e~~~l~p~--~~~~~~vv~~~~ 298 (305)
|++++...+.+. ...+.+++++++
T Consensus 331 f~~~~~~~~~~~~~~~~~~~i~~~~~ 356 (360)
T 1tw3_A 331 LVVEEVRQLPSPTIPYDLSLLVLAPA 356 (360)
T ss_dssp EEEEEEEEEECSSSSCEEEEEEEEEC
T ss_pred CeEEEEEeCCCCcccCccEEEEEEeC
Confidence 999988776542 122566777664
|
| >2pt6_A Spermidine synthase; transferase, structural genomics consor SGC,dcadoMet complex; HET: S4M 1PG; 2.00A {Plasmodium falciparum} PDB: 2pss_A* 2pt9_A* | Back alignment and structure |
|---|
Probab=99.32 E-value=5.3e-11 Score=109.39 Aligned_cols=147 Identities=16% Similarity=0.132 Sum_probs=100.1
Q ss_pred CCCCEEEEEecCCCccHHHHHhhhCCCcEEEEEeCChHHHHHHHHHHHc------CCCeEEEEccCCCCcccccCCCcEe
Q 021911 142 KPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKK------RTNVIPIIEDARHPAKYRMLVGMVD 215 (305)
Q Consensus 142 ~~g~~VLDlG~G~G~~t~~la~~~~~~~~V~avD~s~~~~~~l~~~a~~------~~nI~~~~~D~~~~~~~~~~~~~fD 215 (305)
.+..+|||+|||+|..+..+++.. +..+|++||+|+..++.+.+.+.. .+++++++.|+.+.... ..++||
T Consensus 115 ~~~~~VLdiG~G~G~~~~~l~~~~-~~~~v~~vDis~~~l~~ar~~~~~~~~~~~~~~v~~~~~D~~~~l~~--~~~~fD 191 (321)
T 2pt6_A 115 KEPKNVLVVGGGDGGIIRELCKYK-SVENIDICEIDETVIEVSKIYFKNISCGYEDKRVNVFIEDASKFLEN--VTNTYD 191 (321)
T ss_dssp SSCCEEEEEECTTCHHHHHHTTCT-TCCEEEEEESCHHHHHHHHHHCTTTSGGGGSTTEEEEESCHHHHHHH--CCSCEE
T ss_pred CCCCEEEEEcCCccHHHHHHHHcC-CCCEEEEEECCHHHHHHHHHHHHhhccccCCCcEEEEEccHHHHHhh--cCCCce
Confidence 345899999999999999999864 456999999999666555555443 25799999998764322 246899
Q ss_pred EEEEeCCChh-------HHHHHHHHHhccCCCCcEEEEEEcccccCCCCchhhhHHHHHHHHHHCCCcEeEEe--ecCCC
Q 021911 216 VIFSDVAQPD-------QARILALNASYFLKAGGHFVISIKANCIDSTVPAEAVFQSEVKKLQQDQFKPFEQV--TLEPF 286 (305)
Q Consensus 216 ~V~~d~~~~~-------~~~~l~~~a~~~LkpGG~lv~s~~~~~i~~~~~~~~v~~~~~~~l~~~Gf~~~e~~--~l~p~ 286 (305)
+|++|++.+. ..+++. ++.++|||||.|++.+ .+... ....+....+.+++. |...+.. .+..|
T Consensus 192 vIi~d~~~p~~~~~~l~~~~~l~-~~~~~LkpgG~lv~~~--~~~~~---~~~~~~~~~~~l~~~-F~~v~~~~~~vp~~ 264 (321)
T 2pt6_A 192 VIIVDSSDPIGPAETLFNQNFYE-KIYNALKPNGYCVAQC--ESLWI---HVGTIKNMIGYAKKL-FKKVEYANISIPTY 264 (321)
T ss_dssp EEEEECCCSSSGGGGGSSHHHHH-HHHHHEEEEEEEEEEE--CCTTT---CHHHHHHHHHHHHTT-CSEEEEEEEECTTS
T ss_pred EEEECCcCCCCcchhhhHHHHHH-HHHHhcCCCcEEEEEc--CCccc---CHHHHHHHHHHHHHH-CCCeEEEEEEeccc
Confidence 9999986321 156666 9999999999999986 22111 122334445666655 6655543 34445
Q ss_pred CC-ceEEEEEEEc
Q 021911 287 ER-DHACVVGGYR 298 (305)
Q Consensus 287 ~~-~~~~vv~~~~ 298 (305)
.. ...++++.+.
T Consensus 265 ~~g~w~f~~as~~ 277 (321)
T 2pt6_A 265 PCGCIGILCCSKT 277 (321)
T ss_dssp GGGEEEEEEEESS
T ss_pred cCceEEEEEeeCC
Confidence 43 4456677765
|
| >3thr_A Glycine N-methyltransferase; GNMT, folate, methyltransferase binding, liver cytosol, transferase-transferase inhibitor C; HET: C2F TAM; 2.00A {Rattus norvegicus} SCOP: c.66.1.5 PDB: 3ths_A* 1xva_A* 1d2c_A 1kia_A* 1nbh_A* 1bhj_A* 2idj_A 2idk_A* 1d2g_A 1d2h_A* 1nbi_A* 1r8x_A 1r8y_A 1r74_A* 2azt_A* | Back alignment and structure |
|---|
Probab=99.32 E-value=3e-12 Score=115.20 Aligned_cols=105 Identities=18% Similarity=0.128 Sum_probs=78.9
Q ss_pred CCCCCEEEEEecCCCccHHHHHhhhCCCcEEEEEeCChHHHHHHHHHHHcC------CCeEEEEccCCCCcccccCCCcE
Q 021911 141 IKPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKR------TNVIPIIEDARHPAKYRMLVGMV 214 (305)
Q Consensus 141 ~~~g~~VLDlG~G~G~~t~~la~~~~~~~~V~avD~s~~~~~~l~~~a~~~------~nI~~~~~D~~~~~~~~~~~~~f 214 (305)
..++.+|||||||+|.++..+++. + .+|+++|+|+.++..+.+.+... .++.++..|+...+.......+|
T Consensus 55 ~~~~~~vLDiGcG~G~~~~~l~~~-~--~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~f 131 (293)
T 3thr_A 55 QHGCHRVLDVACGTGVDSIMLVEE-G--FSVTSVDASDKMLKYALKERWNRRKEPAFDKWVIEEANWLTLDKDVPAGDGF 131 (293)
T ss_dssp HTTCCEEEETTCTTSHHHHHHHHT-T--CEEEEEESCHHHHHHHHHHHHHTTTSHHHHTCEEEECCGGGHHHHSCCTTCE
T ss_pred ccCCCEEEEecCCCCHHHHHHHHC-C--CeEEEEECCHHHHHHHHHhhhhcccccccceeeEeecChhhCccccccCCCe
Confidence 457789999999999999999987 2 39999999996655554443221 47889999987654211235799
Q ss_pred eEEEEe-CC---Chh-------HHHHHHHHHhccCCCCcEEEEEEc
Q 021911 215 DVIFSD-VA---QPD-------QARILALNASYFLKAGGHFVISIK 249 (305)
Q Consensus 215 D~V~~d-~~---~~~-------~~~~l~~~a~~~LkpGG~lv~s~~ 249 (305)
|+|++. .. .++ ...++. +++++|||||+|+++++
T Consensus 132 D~V~~~g~~l~~~~~~~~~~~~~~~~l~-~~~~~LkpgG~l~~~~~ 176 (293)
T 3thr_A 132 DAVICLGNSFAHLPDSKGDQSEHRLALK-NIASMVRPGGLLVIDHR 176 (293)
T ss_dssp EEEEECTTCGGGSCCSSSSSHHHHHHHH-HHHHTEEEEEEEEEEEE
T ss_pred EEEEEcChHHhhcCccccCHHHHHHHHH-HHHHHcCCCeEEEEEeC
Confidence 999996 33 233 666776 99999999999999873
|
| >2as0_A Hypothetical protein PH1915; RNA methyltransferase, structural genomics, PSI, protein structure initiative; 1.80A {Pyrococcus horikoshii} SCOP: b.122.1.9 c.66.1.51 | Back alignment and structure |
|---|
Probab=99.32 E-value=3.1e-12 Score=120.78 Aligned_cols=104 Identities=19% Similarity=0.146 Sum_probs=84.3
Q ss_pred CCCCEEEEEecCCCccHHHHHhhhCCCcEEEEEeCChHHHHHHHHHHHcC--C-CeEEEEccCCCCccc-ccCCCcEeEE
Q 021911 142 KPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKR--T-NVIPIIEDARHPAKY-RMLVGMVDVI 217 (305)
Q Consensus 142 ~~g~~VLDlG~G~G~~t~~la~~~~~~~~V~avD~s~~~~~~l~~~a~~~--~-nI~~~~~D~~~~~~~-~~~~~~fD~V 217 (305)
+++.+|||+|||+|.++.++|.. ...+|++||+|+.+++.+.++++.+ . ++.+++.|+.+.... .....+||+|
T Consensus 216 ~~~~~VLDl~~G~G~~~~~la~~--g~~~v~~vD~s~~~l~~a~~n~~~n~~~~~v~~~~~d~~~~~~~~~~~~~~fD~V 293 (396)
T 2as0_A 216 QPGDRVLDVFTYTGGFAIHAAIA--GADEVIGIDKSPRAIETAKENAKLNGVEDRMKFIVGSAFEEMEKLQKKGEKFDIV 293 (396)
T ss_dssp CTTCEEEETTCTTTHHHHHHHHT--TCSEEEEEESCHHHHHHHHHHHHHTTCGGGEEEEESCHHHHHHHHHHTTCCEEEE
T ss_pred hCCCeEEEecCCCCHHHHHHHHC--CCCEEEEEeCCHHHHHHHHHHHHHcCCCccceEEECCHHHHHHHHHhhCCCCCEE
Confidence 47899999999999999999987 3458999999998877777777655 2 899999998765321 1114689999
Q ss_pred EEeCCC------------hhHHHHHHHHHhccCCCCcEEEEEE
Q 021911 218 FSDVAQ------------PDQARILALNASYFLKAGGHFVISI 248 (305)
Q Consensus 218 ~~d~~~------------~~~~~~l~~~a~~~LkpGG~lv~s~ 248 (305)
++|+|. .++.+++. ++.++|||||.|++++
T Consensus 294 i~dpP~~~~~~~~~~~~~~~~~~~l~-~~~~~LkpgG~lv~~~ 335 (396)
T 2as0_A 294 VLDPPAFVQHEKDLKAGLRAYFNVNF-AGLNLVKDGGILVTCS 335 (396)
T ss_dssp EECCCCSCSSGGGHHHHHHHHHHHHH-HHHTTEEEEEEEEEEE
T ss_pred EECCCCCCCCHHHHHHHHHHHHHHHH-HHHHhcCCCcEEEEEE
Confidence 999985 45666776 8999999999999997
|
| >3reo_A (ISO)eugenol O-methyltransferase; directed evolution, saturation mutagenesis, regioselectivity transferase; HET: SAH EUG; 1.90A {Clarkia breweri} PDB: 3tky_A* 1kyz_A* 1kyw_A* | Back alignment and structure |
|---|
Probab=99.32 E-value=6e-11 Score=110.89 Aligned_cols=141 Identities=12% Similarity=0.056 Sum_probs=98.7
Q ss_pred CCCCCEEEEEecCCCccHHHHHhhhCCCcEEEEEeCChHHHHHHHHHHHcCCCeEEEEccCCCCcccccCCCcEeEEEEe
Q 021911 141 IKPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKRTNVIPIIEDARHPAKYRMLVGMVDVIFSD 220 (305)
Q Consensus 141 ~~~g~~VLDlG~G~G~~t~~la~~~~~~~~V~avD~s~~~~~~l~~~a~~~~nI~~~~~D~~~~~~~~~~~~~fD~V~~d 220 (305)
..+..+|||||||+|.++..+++.+ |..+++++|+ + .+++.+++.++|+++..|+.++. +.. |+|++.
T Consensus 201 ~~~~~~vlDvG~G~G~~~~~l~~~~-p~~~~~~~D~-~----~~~~~a~~~~~v~~~~~d~~~~~-----p~~-D~v~~~ 268 (368)
T 3reo_A 201 FEGLTTIVDVGGGTGAVASMIVAKY-PSINAINFDL-P----HVIQDAPAFSGVEHLGGDMFDGV-----PKG-DAIFIK 268 (368)
T ss_dssp TTTCSEEEEETCTTSHHHHHHHHHC-TTCEEEEEEC-H----HHHTTCCCCTTEEEEECCTTTCC-----CCC-SEEEEE
T ss_pred ccCCCEEEEeCCCcCHHHHHHHHhC-CCCEEEEEeh-H----HHHHhhhhcCCCEEEecCCCCCC-----CCC-CEEEEe
Confidence 5667899999999999999999986 6779999999 7 66777776789999999998632 123 999986
Q ss_pred CCC---h--hHHHHHHHHHhccCCCCcEEEEEEcccccCCCCchh---------hhH----------HHH-HHHHHHCCC
Q 021911 221 VAQ---P--DQARILALNASYFLKAGGHFVISIKANCIDSTVPAE---------AVF----------QSE-VKKLQQDQF 275 (305)
Q Consensus 221 ~~~---~--~~~~~l~~~a~~~LkpGG~lv~s~~~~~i~~~~~~~---------~v~----------~~~-~~~l~~~Gf 275 (305)
... + +..++|. ++++.|||||+|++.............. ..+ .++ .+.|+++||
T Consensus 269 ~vlh~~~~~~~~~~l~-~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~g~~rt~~e~~~ll~~AGF 347 (368)
T 3reo_A 269 WICHDWSDEHCLKLLK-NCYAALPDHGKVIVAEYILPPSPDPSIATKVVIHTDALMLAYNPGGKERTEKEFQALAMASGF 347 (368)
T ss_dssp SCGGGBCHHHHHHHHH-HHHHHSCTTCEEEEEECCCCSSCCCCHHHHHHHHHHHHHHHHSSBCCCCCHHHHHHHHHHTTC
T ss_pred chhhcCCHHHHHHHHH-HHHHHcCCCCEEEEEEeccCCCCCCchhhhHHHhhhHHHHhhcCCCccCCHHHHHHHHHHCCC
Confidence 552 2 2346666 9999999999999987321111111100 000 122 355689999
Q ss_pred cEeEEeecCCCCCceEEEEEEE
Q 021911 276 KPFEQVTLEPFERDHACVVGGY 297 (305)
Q Consensus 276 ~~~e~~~l~p~~~~~~~vv~~~ 297 (305)
+.+++..+... +.++.+.+
T Consensus 348 ~~v~~~~~~~~---~~vie~~k 366 (368)
T 3reo_A 348 RGFKVASCAFN---TYVMEFLK 366 (368)
T ss_dssp CEEEEEEEETT---EEEEEEEC
T ss_pred eeeEEEEeCCC---cEEEEEEe
Confidence 99998876554 55555443
|
| >2xyq_A Putative 2'-O-methyl transferase; transferase-viral protein complex, rossman fold; HET: SAH; 2.00A {Sars coronavirus} PDB: 2xyv_A* 2xyr_A* | Back alignment and structure |
|---|
Probab=99.32 E-value=5.2e-12 Score=114.38 Aligned_cols=131 Identities=16% Similarity=0.179 Sum_probs=89.7
Q ss_pred cCCCCCCEEEEEecCC------CccHHHHHhhhCCCcEEEEEeCChHHHHHHHHHHHcCCCeEE-EEccCCCCcccccCC
Q 021911 139 IWIKPGARVLYLGAAS------GTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKRTNVIP-IIEDARHPAKYRMLV 211 (305)
Q Consensus 139 ~~~~~g~~VLDlG~G~------G~~t~~la~~~~~~~~V~avD~s~~~~~~l~~~a~~~~nI~~-~~~D~~~~~~~~~~~ 211 (305)
+.++++.+|||||||+ |. ..+++.+++.++|++||+|+. -+++++ ++.|+++.+. .
T Consensus 59 l~l~~g~~VLDLGcGsg~~~GpGs--~~~a~~~~~~~~V~gvDis~~-----------v~~v~~~i~gD~~~~~~----~ 121 (290)
T 2xyq_A 59 LAVPYNMRVIHFGAGSDKGVAPGT--AVLRQWLPTGTLLVDSDLNDF-----------VSDADSTLIGDCATVHT----A 121 (290)
T ss_dssp CCCCTTCEEEEESCCCTTSBCHHH--HHHHHHSCTTCEEEEEESSCC-----------BCSSSEEEESCGGGCCC----S
T ss_pred cCCCCCCEEEEeCCCCCCCCCcHH--HHHHHHcCCCCEEEEEECCCC-----------CCCCEEEEECccccCCc----c
Confidence 3678899999999944 66 666777765689999999994 147889 9999987542 3
Q ss_pred CcEeEEEEeCCCh--------------hHHHHHHHHHhccCCCCcEEEEEEcccccCCCCchhhhHHHHHHHHHHCCCcE
Q 021911 212 GMVDVIFSDVAQP--------------DQARILALNASYFLKAGGHFVISIKANCIDSTVPAEAVFQSEVKKLQQDQFKP 277 (305)
Q Consensus 212 ~~fD~V~~d~~~~--------------~~~~~l~~~a~~~LkpGG~lv~s~~~~~i~~~~~~~~v~~~~~~~l~~~Gf~~ 277 (305)
.+||+|++|++.+ ...+++. .+.++|||||+|++.+.. .. .. .+..+.+++.||..
T Consensus 122 ~~fD~Vvsn~~~~~~g~~~~d~~~~~~l~~~~l~-~a~r~LkpGG~~v~~~~~----~~-~~----~~l~~~l~~~GF~~ 191 (290)
T 2xyq_A 122 NKWDLIISDMYDPRTKHVTKENDSKEGFFTYLCG-FIKQKLALGGSIAVKITE----HS-WN----ADLYKLMGHFSWWT 191 (290)
T ss_dssp SCEEEEEECCCCCC---CCSCCCCCCTHHHHHHH-HHHHHEEEEEEEEEEECS----SS-CC----HHHHHHHTTEEEEE
T ss_pred CcccEEEEcCCccccccccccccchHHHHHHHHH-HHHHhcCCCcEEEEEEec----cC-CH----HHHHHHHHHcCCcE
Confidence 6899999987532 1335666 899999999999997621 11 11 12245566778887
Q ss_pred eEEeecCCCCCceEEEEEEE
Q 021911 278 FEQVTLEPFERDHACVVGGY 297 (305)
Q Consensus 278 ~e~~~l~p~~~~~~~vv~~~ 297 (305)
++.....+-. .+.++++..
T Consensus 192 v~~~asr~~s-~e~~lv~~~ 210 (290)
T 2xyq_A 192 AFVTNVNASS-SEAFLIGAN 210 (290)
T ss_dssp EEEEGGGTTS-SCEEEEEEE
T ss_pred EEEEEcCCCc-hheEEecCC
Confidence 7666333333 344454443
|
| >2h00_A Methyltransferase 10 domain containing protein; structural genomics, structural genomics consortium, SGC; HET: SAH; 2.00A {Homo sapiens} SCOP: c.66.1.54 | Back alignment and structure |
|---|
Probab=99.31 E-value=2.9e-12 Score=113.19 Aligned_cols=79 Identities=6% Similarity=-0.034 Sum_probs=59.9
Q ss_pred CCCEEEEEecCCCccHHHHHhhhCCCcEEEEEeCChHHHHHHHHHHHcC---CCeEEEEccCCCC-c-ccccC-CCcEeE
Q 021911 143 PGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKR---TNVIPIIEDARHP-A-KYRML-VGMVDV 216 (305)
Q Consensus 143 ~g~~VLDlG~G~G~~t~~la~~~~~~~~V~avD~s~~~~~~l~~~a~~~---~nI~~~~~D~~~~-~-~~~~~-~~~fD~ 216 (305)
++.+|||+|||+|.++..++... +..+|+++|+|+.+++.+.+.++.. .+|++++.|+.+. . ..... ..+||+
T Consensus 65 ~~~~vLDlG~G~G~~~~~la~~~-~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~fD~ 143 (254)
T 2h00_A 65 TLRRGIDIGTGASCIYPLLGATL-NGWYFLATEVDDMCFNYAKKNVEQNNLSDLIKVVKVPQKTLLMDALKEESEIIYDF 143 (254)
T ss_dssp CCCEEEEESCTTTTHHHHHHHHH-HCCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCTTCSSTTTSTTCCSCCBSE
T ss_pred CCCEEEEeCCChhHHHHHHHHhC-CCCeEEEEECCHHHHHHHHHHHHHcCCCccEEEEEcchhhhhhhhhhcccCCcccE
Confidence 57899999999999999999875 3569999999997766666655543 3499999998652 2 11100 258999
Q ss_pred EEEeCC
Q 021911 217 IFSDVA 222 (305)
Q Consensus 217 V~~d~~ 222 (305)
|++|+|
T Consensus 144 i~~npp 149 (254)
T 2h00_A 144 CMCNPP 149 (254)
T ss_dssp EEECCC
T ss_pred EEECCC
Confidence 999987
|
| >1xj5_A Spermidine synthase 1; structural genomics, protein structure initiative, CESG, AT1G23820, putrescine aminopropyl transferase, SPDS1; 2.70A {Arabidopsis thaliana} SCOP: c.66.1.17 PDB: 2q41_A | Back alignment and structure |
|---|
Probab=99.31 E-value=4.4e-11 Score=110.50 Aligned_cols=148 Identities=14% Similarity=0.145 Sum_probs=98.2
Q ss_pred CCCCEEEEEecCCCccHHHHHhhhCCCcEEEEEeCChHHHHHHHHHHHc------CCCeEEEEccCCCCcccccCCCcEe
Q 021911 142 KPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKK------RTNVIPIIEDARHPAKYRMLVGMVD 215 (305)
Q Consensus 142 ~~g~~VLDlG~G~G~~t~~la~~~~~~~~V~avD~s~~~~~~l~~~a~~------~~nI~~~~~D~~~~~~~~~~~~~fD 215 (305)
....+|||||||+|..+..+++.. +..+|++||+|+.+++.+.+.+.. .++|++++.|+...... ....+||
T Consensus 119 ~~~~~VLdIG~G~G~~a~~la~~~-~~~~V~~VDis~~~l~~Ar~~~~~~~~gl~~~rv~~~~~D~~~~l~~-~~~~~fD 196 (334)
T 1xj5_A 119 PNPKKVLVIGGGDGGVLREVARHA-SIEQIDMCEIDKMVVDVSKQFFPDVAIGYEDPRVNLVIGDGVAFLKN-AAEGSYD 196 (334)
T ss_dssp SCCCEEEEETCSSSHHHHHHTTCT-TCCEEEEEESCHHHHHHHHHHCHHHHGGGGSTTEEEEESCHHHHHHT-SCTTCEE
T ss_pred CCCCEEEEECCCccHHHHHHHHcC-CCCEEEEEECCHHHHHHHHHHHHhhccccCCCcEEEEECCHHHHHHh-ccCCCcc
Confidence 456899999999999999999873 456999999999666555554432 36899999998654221 1236899
Q ss_pred EEEEeCCChh-------HHHHHHHHHhccCCCCcEEEEEEcccccCCCCchhhhHHHHHHHHHHCCCc-EeE--EeecCC
Q 021911 216 VIFSDVAQPD-------QARILALNASYFLKAGGHFVISIKANCIDSTVPAEAVFQSEVKKLQQDQFK-PFE--QVTLEP 285 (305)
Q Consensus 216 ~V~~d~~~~~-------~~~~l~~~a~~~LkpGG~lv~s~~~~~i~~~~~~~~v~~~~~~~l~~~Gf~-~~e--~~~l~p 285 (305)
+|++|++.+. ..+++. ++.++|||||.|++.+ .+.... ...+...++.+++. |. ... ...+..
T Consensus 197 lIi~d~~~p~~~~~~l~~~~~l~-~~~~~LkpgG~lv~~~--~~~~~~---~~~~~~~~~~l~~~-F~~~~~~~~~~vP~ 269 (334)
T 1xj5_A 197 AVIVDSSDPIGPAKELFEKPFFQ-SVARALRPGGVVCTQA--ESLWLH---MDIIEDIVSNCREI-FKGSVNYAWTSVPT 269 (334)
T ss_dssp EEEECCCCTTSGGGGGGSHHHHH-HHHHHEEEEEEEEEEC--CCTTTC---HHHHHHHHHHHHHH-CSSCEEEEEEECTT
T ss_pred EEEECCCCccCcchhhhHHHHHH-HHHHhcCCCcEEEEec--CCcccc---HHHHHHHHHHHHHh-CccccceEEEeCCc
Confidence 9999887332 356666 9999999999999975 222111 12233334455433 54 232 234555
Q ss_pred CC-CceEEEEEEEc
Q 021911 286 FE-RDHACVVGGYR 298 (305)
Q Consensus 286 ~~-~~~~~vv~~~~ 298 (305)
|. ....++++.++
T Consensus 270 y~~g~~gf~~as~~ 283 (334)
T 1xj5_A 270 YPSGVIGFMLCSTE 283 (334)
T ss_dssp SGGGEEEEEEEECS
T ss_pred ccCCceEEEEcccC
Confidence 64 34556677764
|
| >3bt7_A TRNA (uracil-5-)-methyltransferase; methyluridine, methyltransferase, TRMA, RUMT; HET: 5MU; 2.43A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.31 E-value=8.2e-12 Score=116.89 Aligned_cols=128 Identities=16% Similarity=0.102 Sum_probs=91.5
Q ss_pred CCEEEEEecCCCccHHHHHhhhCCCcEEEEEeCChHHHHHHHHHHHcC--CCeEEEEccCCCCcccccC-----------
Q 021911 144 GARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKR--TNVIPIIEDARHPAKYRML----------- 210 (305)
Q Consensus 144 g~~VLDlG~G~G~~t~~la~~~~~~~~V~avD~s~~~~~~l~~~a~~~--~nI~~~~~D~~~~~~~~~~----------- 210 (305)
+.+|||+|||+|++++.+|... .+|++||+|+.+++.+.++++.+ +|+++++.|+.+.......
T Consensus 214 ~~~vLDl~cG~G~~~l~la~~~---~~V~gvd~~~~ai~~a~~n~~~ng~~~v~~~~~d~~~~~~~~~~~~~~~~l~~~~ 290 (369)
T 3bt7_A 214 KGDLLELYCGNGNFSLALARNF---DRVLATEIAKPSVAAAQYNIAANHIDNVQIIRMAAEEFTQAMNGVREFNRLQGID 290 (369)
T ss_dssp CSEEEEESCTTSHHHHHHGGGS---SEEEEECCCHHHHHHHHHHHHHTTCCSEEEECCCSHHHHHHHSSCCCCTTGGGSC
T ss_pred CCEEEEccCCCCHHHHHHHhcC---CEEEEEECCHHHHHHHHHHHHHcCCCceEEEECCHHHHHHHHhhccccccccccc
Confidence 5789999999999999999863 48999999998888877777665 5899999998664321000
Q ss_pred --CCcEeEEEEeCCChhHHHHHHHHHhccCCCCcEEEEEEcccccCCCCchhhhHHHHHHHHHHCCCcEeEEeecCCCCC
Q 021911 211 --VGMVDVIFSDVAQPDQARILALNASYFLKAGGHFVISIKANCIDSTVPAEAVFQSEVKKLQQDQFKPFEQVTLEPFER 288 (305)
Q Consensus 211 --~~~fD~V~~d~~~~~~~~~l~~~a~~~LkpGG~lv~s~~~~~i~~~~~~~~v~~~~~~~l~~~Gf~~~e~~~l~p~~~ 288 (305)
...||+|++|+|..... . .+.+.|+++|.++|++ | ++. .++..+..|.+ +|++.+...++.|..
T Consensus 291 ~~~~~fD~Vv~dPPr~g~~---~-~~~~~l~~~g~ivyvs---c-----~p~-t~ard~~~l~~-~y~~~~~~~~D~FP~ 356 (369)
T 3bt7_A 291 LKSYQCETIFVDPPRSGLD---S-ETEKMVQAYPRILYIS---C-----NPE-TLCKNLETLSQ-THKVERLALFDQFPY 356 (369)
T ss_dssp GGGCCEEEEEECCCTTCCC---H-HHHHHHTTSSEEEEEE---S-----CHH-HHHHHHHHHHH-HEEEEEEEEECCSTT
T ss_pred cccCCCCEEEECcCccccH---H-HHHHHHhCCCEEEEEE---C-----CHH-HHHHHHHHHhh-CcEEEEEEeeccCCC
Confidence 03799999999965322 1 3445677899999987 4 122 24555566654 588877766665554
|
| >1r18_A Protein-L-isoaspartate(D-aspartate)-O-methyltrans; methyltransferase, isomerization, protein repair, S-adenosyl homocysteine; HET: SAH; 2.20A {Drosophila melanogaster} SCOP: c.66.1.7 | Back alignment and structure |
|---|
Probab=99.30 E-value=5.2e-12 Score=109.75 Aligned_cols=102 Identities=20% Similarity=0.295 Sum_probs=79.1
Q ss_pred CCCCCCEEEEEecCCCccHHHHHhhhCC-----CcEEEEEeCChHHHHHHHHHHHc-------CCCeEEEEccCCCCccc
Q 021911 140 WIKPGARVLYLGAASGTTVSHVSDIVGP-----NGVVYAVEFSHRSGRDLVNMAKK-------RTNVIPIIEDARHPAKY 207 (305)
Q Consensus 140 ~~~~g~~VLDlG~G~G~~t~~la~~~~~-----~~~V~avD~s~~~~~~l~~~a~~-------~~nI~~~~~D~~~~~~~ 207 (305)
.++++.+|||+|||+|.++..+++.++. .++|+++|+++..++.+.+.+.. ..++.+++.|+....+.
T Consensus 81 ~~~~~~~VLdiG~G~G~~~~~la~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~ 160 (227)
T 1r18_A 81 HLKPGARILDVGSGSGYLTACFYRYIKAKGVDADTRIVGIEHQAELVRRSKANLNTDDRSMLDSGQLLIVEGDGRKGYPP 160 (227)
T ss_dssp TCCTTCEEEEESCTTSHHHHHHHHHHHHSCCCTTCEEEEEESCHHHHHHHHHHHHHHHHHHHHHTSEEEEESCGGGCCGG
T ss_pred hCCCCCEEEEECCCccHHHHHHHHhcccccCCccCEEEEEEcCHHHHHHHHHHHHhcCccccCCCceEEEECCcccCCCc
Confidence 3678899999999999999999997642 35899999999666655554433 35899999998763221
Q ss_pred ccCCCcEeEEEEeCCChhHHHHHHHHHhccCCCCcEEEEEE
Q 021911 208 RMLVGMVDVIFSDVAQPDQARILALNASYFLKAGGHFVISI 248 (305)
Q Consensus 208 ~~~~~~fD~V~~d~~~~~~~~~l~~~a~~~LkpGG~lv~s~ 248 (305)
..+||+|+++.+.+... . ++.++|||||+|++++
T Consensus 161 ---~~~fD~I~~~~~~~~~~---~-~~~~~LkpgG~lvi~~ 194 (227)
T 1r18_A 161 ---NAPYNAIHVGAAAPDTP---T-ELINQLASGGRLIVPV 194 (227)
T ss_dssp ---GCSEEEEEECSCBSSCC---H-HHHHTEEEEEEEEEEE
T ss_pred ---CCCccEEEECCchHHHH---H-HHHHHhcCCCEEEEEE
Confidence 36899999988755422 3 6778999999999997
|
| >1wy7_A Hypothetical protein PH1948; seven-stranded beta sheet, methyltransferase fold, structura genomics, transferase; HET: SAH; 2.20A {Pyrococcus horikoshii} SCOP: c.66.1.32 | Back alignment and structure |
|---|
Probab=99.30 E-value=4.5e-11 Score=101.93 Aligned_cols=121 Identities=16% Similarity=0.020 Sum_probs=82.2
Q ss_pred CCCCCCEEEEEecCCCccHHHHHhhhCCCcEEEEEeCChHHHHHHHHHHHcCC-CeEEEEccCCCCcccccCCCcEeEEE
Q 021911 140 WIKPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKRT-NVIPIIEDARHPAKYRMLVGMVDVIF 218 (305)
Q Consensus 140 ~~~~g~~VLDlG~G~G~~t~~la~~~~~~~~V~avD~s~~~~~~l~~~a~~~~-nI~~~~~D~~~~~~~~~~~~~fD~V~ 218 (305)
...++.+|||+|||+|.++..++.. ...+|+++|+|+.+++.+.+.++... ++.+++.|+.+.+ .+||+|+
T Consensus 46 ~~~~~~~vlD~g~G~G~~~~~l~~~--~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~d~~~~~------~~~D~v~ 117 (207)
T 1wy7_A 46 GDIEGKVVADLGAGTGVLSYGALLL--GAKEVICVEVDKEAVDVLIENLGEFKGKFKVFIGDVSEFN------SRVDIVI 117 (207)
T ss_dssp TSSTTCEEEEETCTTCHHHHHHHHT--TCSEEEEEESCHHHHHHHHHHTGGGTTSEEEEESCGGGCC------CCCSEEE
T ss_pred CCCCcCEEEEeeCCCCHHHHHHHHc--CCCEEEEEECCHHHHHHHHHHHHHcCCCEEEEECchHHcC------CCCCEEE
Confidence 4567899999999999999999987 33489999999966665555554433 7999999987652 4899999
Q ss_pred EeCCC-----hhHHHHHHHHHhccCCCCcEEEEEEcccccCCCCchhhhHHHHHHHHHHCCCcEeEE
Q 021911 219 SDVAQ-----PDQARILALNASYFLKAGGHFVISIKANCIDSTVPAEAVFQSEVKKLQQDQFKPFEQ 280 (305)
Q Consensus 219 ~d~~~-----~~~~~~l~~~a~~~LkpGG~lv~s~~~~~i~~~~~~~~v~~~~~~~l~~~Gf~~~e~ 280 (305)
+|+|. ......+. .+.++| ++ ++++. +. ++ .......+.+++.||++..+
T Consensus 118 ~~~p~~~~~~~~~~~~l~-~~~~~l--~~-~~~~~----~~---~~-~~~~~~~~~l~~~g~~~~~~ 172 (207)
T 1wy7_A 118 MNPPFGSQRKHADRPFLL-KAFEIS--DV-VYSIH----LA---KP-EVRRFIEKFSWEHGFVVTHR 172 (207)
T ss_dssp ECCCCSSSSTTTTHHHHH-HHHHHC--SE-EEEEE----EC---CH-HHHHHHHHHHHHTTEEEEEE
T ss_pred EcCCCccccCCchHHHHH-HHHHhc--Cc-EEEEE----eC---Cc-CCHHHHHHHHHHCCCeEEEE
Confidence 99982 23345555 777777 43 43332 11 11 11222245567788876543
|
| >3tm4_A TRNA (guanine N2-)-methyltransferase TRM14; rossmann fold, thump domain, tRNA methyltransferase; HET: SAM; 1.95A {Pyrococcus furiosus} PDB: 3tlj_A* 3tm5_A* | Back alignment and structure |
|---|
Probab=99.30 E-value=5.7e-11 Score=111.32 Aligned_cols=139 Identities=17% Similarity=0.144 Sum_probs=98.3
Q ss_pred CchhhHHHHHHHccccccCCCCCCEEEEEecCCCccHHHHHhhhCCCcEEEEEeCChHHHHHHHHHHHcC---CCeEEEE
Q 021911 122 NPFRSKLAAAVLGGVDNIWIKPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKR---TNVIPII 198 (305)
Q Consensus 122 ~~~~s~l~a~ll~~l~~~~~~~g~~VLDlG~G~G~~t~~la~~~~~~~~V~avD~s~~~~~~l~~~a~~~---~nI~~~~ 198 (305)
.|....+++.++..+ +.++.+|||+|||+|+++..+|... ..++|+++|+|+.+++.+.++++.. ++|++++
T Consensus 200 a~l~~~la~~l~~~~----~~~~~~vLD~gCGsG~~~i~~a~~~-~~~~v~g~Dis~~~l~~A~~n~~~~gl~~~i~~~~ 274 (373)
T 3tm4_A 200 AHLKASIANAMIELA----ELDGGSVLDPMCGSGTILIELALRR-YSGEIIGIEKYRKHLIGAEMNALAAGVLDKIKFIQ 274 (373)
T ss_dssp TCCCHHHHHHHHHHH----TCCSCCEEETTCTTCHHHHHHHHTT-CCSCEEEEESCHHHHHHHHHHHHHTTCGGGCEEEE
T ss_pred CCccHHHHHHHHHhh----cCCCCEEEEccCcCcHHHHHHHHhC-CCCeEEEEeCCHHHHHHHHHHHHHcCCCCceEEEE
Confidence 355666777765422 5678999999999999999999874 4458999999997766666665544 4799999
Q ss_pred ccCCCCcccccCCCcEeEEEEeCCCh----------h-HHHHHHHHHhccCCCCcEEEEEEcccccCCCCchhhhHHHHH
Q 021911 199 EDARHPAKYRMLVGMVDVIFSDVAQP----------D-QARILALNASYFLKAGGHFVISIKANCIDSTVPAEAVFQSEV 267 (305)
Q Consensus 199 ~D~~~~~~~~~~~~~fD~V~~d~~~~----------~-~~~~l~~~a~~~LkpGG~lv~s~~~~~i~~~~~~~~v~~~~~ 267 (305)
.|+.+.+. ...+||+|++|+|.. + ..+++. .+.++| +|.+++.+ + ++... .
T Consensus 275 ~D~~~~~~---~~~~fD~Ii~npPyg~r~~~~~~~~~ly~~~~~-~l~r~l--~g~~~~i~---~-----~~~~~----~ 336 (373)
T 3tm4_A 275 GDATQLSQ---YVDSVDFAISNLPYGLKIGKKSMIPDLYMKFFN-ELAKVL--EKRGVFIT---T-----EKKAI----E 336 (373)
T ss_dssp CCGGGGGG---TCSCEEEEEEECCCC------CCHHHHHHHHHH-HHHHHE--EEEEEEEE---S-----CHHHH----H
T ss_pred CChhhCCc---ccCCcCEEEECCCCCcccCcchhHHHHHHHHHH-HHHHHc--CCeEEEEE---C-----CHHHH----H
Confidence 99988653 246899999999921 1 234444 778878 66776665 1 12111 2
Q ss_pred HHHHHCCCcEeEEeec
Q 021911 268 KKLQQDQFKPFEQVTL 283 (305)
Q Consensus 268 ~~l~~~Gf~~~e~~~l 283 (305)
+.+.+.||++.+...+
T Consensus 337 ~~~~~~G~~~~~~~~~ 352 (373)
T 3tm4_A 337 EAIAENGFEIIHHRVI 352 (373)
T ss_dssp HHHHHTTEEEEEEEEE
T ss_pred HHHHHcCCEEEEEEEE
Confidence 3556789998876544
|
| >1dl5_A Protein-L-isoaspartate O-methyltransferase; isoaspartyl residues, protein repair, deamidation, post-translational modification; HET: SAH; 1.80A {Thermotoga maritima} SCOP: c.66.1.7 d.197.1.1 | Back alignment and structure |
|---|
Probab=99.30 E-value=9e-12 Score=114.11 Aligned_cols=102 Identities=27% Similarity=0.364 Sum_probs=80.4
Q ss_pred CCCCCCEEEEEecCCCccHHHHHhhhCCCcEEEEEeCChHHHHHHHHHHHcC--CCeEEEEccCCCCcccccCCCcEeEE
Q 021911 140 WIKPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKR--TNVIPIIEDARHPAKYRMLVGMVDVI 217 (305)
Q Consensus 140 ~~~~g~~VLDlG~G~G~~t~~la~~~~~~~~V~avD~s~~~~~~l~~~a~~~--~nI~~~~~D~~~~~~~~~~~~~fD~V 217 (305)
.++++.+|||+|||+|.++..+++.....++|+++|+|+..++.+.+.++.. +++.+++.|+.+.... ..+||+|
T Consensus 72 ~~~~~~~VLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~g~~~v~~~~~d~~~~~~~---~~~fD~I 148 (317)
T 1dl5_A 72 GLDKGMRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVERLGIENVIFVCGDGYYGVPE---FSPYDVI 148 (317)
T ss_dssp TCCTTCEEEEECCTTSHHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHTTCCSEEEEESCGGGCCGG---GCCEEEE
T ss_pred CCCCcCEEEEecCCchHHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHHHHcCCCCeEEEECChhhcccc---CCCeEEE
Confidence 5778999999999999999999998654578999999996666665555443 5799999999764322 3689999
Q ss_pred EEeCCChhHHHHHHHHHhccCCCCcEEEEEE
Q 021911 218 FSDVAQPDQARILALNASYFLKAGGHFVISI 248 (305)
Q Consensus 218 ~~d~~~~~~~~~l~~~a~~~LkpGG~lv~s~ 248 (305)
+++.+..... . ++.++|||||+|++++
T Consensus 149 v~~~~~~~~~---~-~~~~~LkpgG~lvi~~ 175 (317)
T 1dl5_A 149 FVTVGVDEVP---E-TWFTQLKEGGRVIVPI 175 (317)
T ss_dssp EECSBBSCCC---H-HHHHHEEEEEEEEEEB
T ss_pred EEcCCHHHHH---H-HHHHhcCCCcEEEEEE
Confidence 9988744322 2 5668999999999975
|
| >3gdh_A Trimethylguanosine synthase homolog; M7G, CAP, dimethyltransferase, usnRNA, snoRNA, telomerase, cytoplasm, methyltransferase, nucleus; HET: MGP SAH; 2.00A {Homo sapiens} PDB: 3egi_A* | Back alignment and structure |
|---|
Probab=99.30 E-value=2.1e-13 Score=119.47 Aligned_cols=100 Identities=13% Similarity=-0.046 Sum_probs=78.1
Q ss_pred CCCCCEEEEEecCCCccHHHHHhhhCCCcEEEEEeCChHHHHHHHHHHHcC---CCeEEEEccCCCCcccccCCCcEeEE
Q 021911 141 IKPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKR---TNVIPIIEDARHPAKYRMLVGMVDVI 217 (305)
Q Consensus 141 ~~~g~~VLDlG~G~G~~t~~la~~~~~~~~V~avD~s~~~~~~l~~~a~~~---~nI~~~~~D~~~~~~~~~~~~~fD~V 217 (305)
..++.+|||+|||+|.++..+++.. .+|+++|+|+.+++.+.+.++.. +++.+++.|+.+... ..+||+|
T Consensus 76 ~~~~~~vLD~gcG~G~~~~~la~~~---~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~----~~~~D~v 148 (241)
T 3gdh_A 76 SFKCDVVVDAFCGVGGNTIQFALTG---MRVIAIDIDPVKIALARNNAEVYGIADKIEFICGDFLLLAS----FLKADVV 148 (241)
T ss_dssp HSCCSEEEETTCTTSHHHHHHHHTT---CEEEEEESCHHHHHHHHHHHHHTTCGGGEEEEESCHHHHGG----GCCCSEE
T ss_pred ccCCCEEEECccccCHHHHHHHHcC---CEEEEEECCHHHHHHHHHHHHHcCCCcCeEEEECChHHhcc----cCCCCEE
Confidence 3478999999999999999999872 69999999997766666665544 379999999977642 4699999
Q ss_pred EEeCCCh---hHHHHHHHHHhccCCCCcEEEEEE
Q 021911 218 FSDVAQP---DQARILALNASYFLKAGGHFVISI 248 (305)
Q Consensus 218 ~~d~~~~---~~~~~l~~~a~~~LkpGG~lv~s~ 248 (305)
+++++.. +....+. ++.++|+|+|.+++.+
T Consensus 149 ~~~~~~~~~~~~~~~~~-~~~~~L~pgG~~i~~~ 181 (241)
T 3gdh_A 149 FLSPPWGGPDYATAETF-DIRTMMSPDGFEIFRL 181 (241)
T ss_dssp EECCCCSSGGGGGSSSB-CTTTSCSSCHHHHHHH
T ss_pred EECCCcCCcchhhhHHH-HHHhhcCCcceeHHHH
Confidence 9998842 2222444 6889999999977764
|
| >3opn_A Putative hemolysin; structural genomics, PSI-2, protein structure initiative, NE SGX research center for structural genomics, nysgxrc; 2.05A {Lactococcus lactis subsp} | Back alignment and structure |
|---|
Probab=99.29 E-value=3.9e-12 Score=111.67 Aligned_cols=156 Identities=14% Similarity=0.076 Sum_probs=89.0
Q ss_pred ccccCCC-CCCEEEEEecCCCccHHHHHhhhCCCcEEEEEeCChHHHHHHHHHHHcC-CCeEEEE-ccCCCCcccccCCC
Q 021911 136 VDNIWIK-PGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKR-TNVIPII-EDARHPAKYRMLVG 212 (305)
Q Consensus 136 l~~~~~~-~g~~VLDlG~G~G~~t~~la~~~~~~~~V~avD~s~~~~~~l~~~a~~~-~nI~~~~-~D~~~~~~~~~~~~ 212 (305)
|+.+.+. ++.+|||||||+|.++..+++. ...+|++||+|+ .|++.+.++ +++.... .++...........
T Consensus 29 L~~~~~~~~g~~VLDiGcGtG~~t~~la~~--g~~~V~gvDis~----~ml~~a~~~~~~~~~~~~~~~~~~~~~~~~~~ 102 (232)
T 3opn_A 29 LKEFHLEINGKTCLDIGSSTGGFTDVMLQN--GAKLVYALDVGT----NQLAWKIRSDERVVVMEQFNFRNAVLADFEQG 102 (232)
T ss_dssp HHHTTCCCTTCEEEEETCTTSHHHHHHHHT--TCSEEEEECSSC----CCCCHHHHTCTTEEEECSCCGGGCCGGGCCSC
T ss_pred HHHcCCCCCCCEEEEEccCCCHHHHHHHhc--CCCEEEEEcCCH----HHHHHHHHhCccccccccceEEEeCHhHcCcC
Confidence 3333343 4679999999999999999987 334999999999 555554443 3333221 12222211111111
Q ss_pred cEeEEEEeCCChhHHHHHHHHHhccCCCCcEEEEEEcccccCC---------CCchhh---hHHHHHHHHHHCCCcEeEE
Q 021911 213 MVDVIFSDVAQPDQARILALNASYFLKAGGHFVISIKANCIDS---------TVPAEA---VFQSEVKKLQQDQFKPFEQ 280 (305)
Q Consensus 213 ~fD~V~~d~~~~~~~~~l~~~a~~~LkpGG~lv~s~~~~~i~~---------~~~~~~---v~~~~~~~l~~~Gf~~~e~ 280 (305)
.||.+.+|........++. ++.++|||||+|++.++...... ..++.. ...+..+.++++||++...
T Consensus 103 ~~d~~~~D~v~~~l~~~l~-~i~rvLkpgG~lv~~~~p~~e~~~~~~~~~G~~~d~~~~~~~~~~l~~~l~~aGf~v~~~ 181 (232)
T 3opn_A 103 RPSFTSIDVSFISLDLILP-PLYEILEKNGEVAALIKPQFEAGREQVGKNGIIRDPKVHQMTIEKVLKTATQLGFSVKGL 181 (232)
T ss_dssp CCSEEEECCSSSCGGGTHH-HHHHHSCTTCEEEEEECHHHHSCHHHHC-CCCCCCHHHHHHHHHHHHHHHHHHTEEEEEE
T ss_pred CCCEEEEEEEhhhHHHHHH-HHHHhccCCCEEEEEECcccccCHHHhCcCCeecCcchhHHHHHHHHHHHHHCCCEEEEE
Confidence 3566666655444466666 99999999999999753211000 001111 1122245668899998765
Q ss_pred eec---CCCCCceEEEEEEEc
Q 021911 281 VTL---EPFERDHACVVGGYR 298 (305)
Q Consensus 281 ~~l---~p~~~~~~~vv~~~~ 298 (305)
... .++..-.+++-.++.
T Consensus 182 ~~~pi~g~~gn~e~l~~~~~~ 202 (232)
T 3opn_A 182 TFSPIKGGAGNVEFLVHLLKD 202 (232)
T ss_dssp EECSSCBTTTBCCEEEEEEES
T ss_pred EEccCCCCCCCHHHHHHHhhc
Confidence 422 123344555555553
|
| >2ip2_A Probable phenazine-specific methyltransferase; pyocyanin, phenazine-1-carboxy PHZM; 1.80A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
Probab=99.29 E-value=1.1e-10 Score=107.17 Aligned_cols=145 Identities=14% Similarity=0.093 Sum_probs=99.0
Q ss_pred CCCCCCEEEEEecCCCccHHHHHhhhCCCcEEEEEeCChHHHHHHHHHHHc---CCCeEEEEccCCCCcccccCCCcEeE
Q 021911 140 WIKPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKK---RTNVIPIIEDARHPAKYRMLVGMVDV 216 (305)
Q Consensus 140 ~~~~g~~VLDlG~G~G~~t~~la~~~~~~~~V~avD~s~~~~~~l~~~a~~---~~nI~~~~~D~~~~~~~~~~~~~fD~ 216 (305)
...+ .+|||+|||+|.++..+++.+ +..+++++|+ +..+..+.+.... .++|+++..|+.+.. +..||+
T Consensus 165 ~~~~-~~vlDvG~G~G~~~~~l~~~~-p~~~~~~~D~-~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~-----~~~~D~ 236 (334)
T 2ip2_A 165 DFRG-RSFVDVGGGSGELTKAILQAE-PSARGVMLDR-EGSLGVARDNLSSLLAGERVSLVGGDMLQEV-----PSNGDI 236 (334)
T ss_dssp CCTT-CEEEEETCTTCHHHHHHHHHC-TTCEEEEEEC-TTCTHHHHHHTHHHHHTTSEEEEESCTTTCC-----CSSCSE
T ss_pred CCCC-CEEEEeCCCchHHHHHHHHHC-CCCEEEEeCc-HHHHHHHHHHHhhcCCCCcEEEecCCCCCCC-----CCCCCE
Confidence 3455 899999999999999999986 5679999999 8555544444332 257999999997632 357999
Q ss_pred EEEeCCC---hh--HHHHHHHHHhccCCCCcEEEEEEcccccCCCCchhhh----------------HHHHHHHHHHCCC
Q 021911 217 IFSDVAQ---PD--QARILALNASYFLKAGGHFVISIKANCIDSTVPAEAV----------------FQSEVKKLQQDQF 275 (305)
Q Consensus 217 V~~d~~~---~~--~~~~l~~~a~~~LkpGG~lv~s~~~~~i~~~~~~~~v----------------~~~~~~~l~~~Gf 275 (305)
|++.... ++ ...++. ++++.|||||+|++.......... +.... ..+..+.++++||
T Consensus 237 v~~~~vl~~~~~~~~~~~l~-~~~~~L~pgG~l~i~e~~~~~~~~-~~~~~~~~~~~~~~~~~~~~t~~e~~~ll~~aGf 314 (334)
T 2ip2_A 237 YLLSRIIGDLDEAASLRLLG-NCREAMAGDGRVVVIERTISASEP-SPMSVLWDVHLFMACAGRHRTTEEVVDLLGRGGF 314 (334)
T ss_dssp EEEESCGGGCCHHHHHHHHH-HHHHHSCTTCEEEEEECCBCSSSC-CHHHHHHHHHHHHHHSCCCCBHHHHHHHHHHTTE
T ss_pred EEEchhccCCCHHHHHHHHH-HHHHhcCCCCEEEEEEeccCCCCC-cchhHHhhhHhHhhCCCcCCCHHHHHHHHHHCCC
Confidence 9986652 22 336666 999999999999998732111111 11000 1112455688999
Q ss_pred cEeEEeecCCCCCceEEEEEEE
Q 021911 276 KPFEQVTLEPFERDHACVVGGY 297 (305)
Q Consensus 276 ~~~e~~~l~p~~~~~~~vv~~~ 297 (305)
+.++...... .+.++++++
T Consensus 315 ~~~~~~~~~~---~~~~i~~~~ 333 (334)
T 2ip2_A 315 AVERIVDLPM---ETRMIVAAR 333 (334)
T ss_dssp EEEEEEEETT---TEEEEEEEE
T ss_pred ceeEEEECCC---CCEEEEEEe
Confidence 9988876533 366777654
|
| >3bzb_A Uncharacterized protein; RED ALGA, protein structure initiat center for eukaryotic structural genomics, CESG, structural genomics; 2.79A {Cyanidioschyzon merolae} | Back alignment and structure |
|---|
Probab=99.29 E-value=4.2e-11 Score=107.84 Aligned_cols=147 Identities=11% Similarity=0.017 Sum_probs=93.9
Q ss_pred hhHHHHHHHccccccCCCCCCEEEEEecCCCccHHHHHhhhCCCcEEEEEeC-ChHHHHHHHHHH-----HcC-------
Q 021911 125 RSKLAAAVLGGVDNIWIKPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEF-SHRSGRDLVNMA-----KKR------- 191 (305)
Q Consensus 125 ~s~l~a~ll~~l~~~~~~~g~~VLDlG~G~G~~t~~la~~~~~~~~V~avD~-s~~~~~~l~~~a-----~~~------- 191 (305)
...++..++..+ ...++.+|||||||+|.++..++.. ...+|+++|+ |+.++..+.+++ +..
T Consensus 64 ~~~l~~~l~~~~---~~~~~~~vLDlG~G~G~~~~~~a~~--~~~~v~~~D~s~~~~~~~a~~n~~~N~~~~~~~~~~~~ 138 (281)
T 3bzb_A 64 ARALADTLCWQP---ELIAGKTVCELGAGAGLVSIVAFLA--GADQVVATDYPDPEILNSLESNIREHTANSCSSETVKR 138 (281)
T ss_dssp HHHHHHHHHHCG---GGTTTCEEEETTCTTSHHHHHHHHT--TCSEEEEEECSCHHHHHHHHHHHHTTCC----------
T ss_pred HHHHHHHHHhcc---hhcCCCeEEEecccccHHHHHHHHc--CCCEEEEEeCCCHHHHHHHHHHHHHhhhhhcccccCCC
Confidence 445555555422 2456789999999999999988876 3458999999 897776666666 222
Q ss_pred CCeEEEEccCCCCccccc---CCCcEeEEEE-eCCC--hhHHHHHHHHHhccCC---C--CcEEEEEEcccccCCCCchh
Q 021911 192 TNVIPIIEDARHPAKYRM---LVGMVDVIFS-DVAQ--PDQARILALNASYFLK---A--GGHFVISIKANCIDSTVPAE 260 (305)
Q Consensus 192 ~nI~~~~~D~~~~~~~~~---~~~~fD~V~~-d~~~--~~~~~~l~~~a~~~Lk---p--GG~lv~s~~~~~i~~~~~~~ 260 (305)
.+|.++..|+.+...... ...+||+|++ |+.. ++...++. .+.++|| | +|.++++.... ... ..
T Consensus 139 ~~v~~~~~~~~~~~~~~~~~~~~~~fD~Ii~~dvl~~~~~~~~ll~-~l~~~Lk~~~p~~gG~l~v~~~~~---~~~-~~ 213 (281)
T 3bzb_A 139 ASPKVVPYRWGDSPDSLQRCTGLQRFQVVLLADLLSFHQAHDALLR-SVKMLLALPANDPTAVALVTFTHH---RPH-LA 213 (281)
T ss_dssp CCCEEEECCTTSCTHHHHHHHSCSSBSEEEEESCCSCGGGHHHHHH-HHHHHBCCTTTCTTCEEEEEECC----------
T ss_pred CCeEEEEecCCCccHHHHhhccCCCCCEEEEeCcccChHHHHHHHH-HHHHHhcccCCCCCCEEEEEEEee---ecc-cc
Confidence 268888777655321100 2468999997 5553 34556665 8999999 9 99988765111 100 00
Q ss_pred hhHHHHHHHHHHCC-CcEeEEe
Q 021911 261 AVFQSEVKKLQQDQ-FKPFEQV 281 (305)
Q Consensus 261 ~v~~~~~~~l~~~G-f~~~e~~ 281 (305)
.......+.+++.| |++.++.
T Consensus 214 ~~~~~~~~~l~~~G~f~v~~~~ 235 (281)
T 3bzb_A 214 ERDLAFFRLVNADGALIAEPWL 235 (281)
T ss_dssp --CTHHHHHHHHSTTEEEEEEE
T ss_pred hhHHHHHHHHHhcCCEEEEEec
Confidence 01122245667899 9988764
|
| >2p41_A Type II methyltransferase; vizier, viral enzymes involved in replication, dengue virus methyltransferase, structural genomics; HET: G1G SAH CIT; 1.80A {Dengue virus 2} SCOP: c.66.1.25 PDB: 2p1d_A* 1l9k_A* 2p3o_A* 2p3q_A* 2p40_A* 2p3l_A* 1r6a_A* | Back alignment and structure |
|---|
Probab=99.29 E-value=3.3e-12 Score=116.66 Aligned_cols=110 Identities=16% Similarity=0.152 Sum_probs=78.0
Q ss_pred hhHHHHHHHccccccCCCCCCEEEEEecCCCccHHHHHhhhCCCcEEEEEeC----ChHHHHHHHHHHH-c-C--CCeEE
Q 021911 125 RSKLAAAVLGGVDNIWIKPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEF----SHRSGRDLVNMAK-K-R--TNVIP 196 (305)
Q Consensus 125 ~s~l~a~ll~~l~~~~~~~g~~VLDlG~G~G~~t~~la~~~~~~~~V~avD~----s~~~~~~l~~~a~-~-~--~nI~~ 196 (305)
++..+..++..++...++++.+|||||||+|.++..+++. +.|++||+ ++.. ++.+. + . ++|.+
T Consensus 64 ~sR~a~KL~~i~~~~~~~~g~~VLDlGcG~G~~s~~la~~----~~V~gvD~~~~~~~~~----~~~~~~~~~~~~~v~~ 135 (305)
T 2p41_A 64 VSRGSAKLRWFVERNLVTPEGKVVDLGCGRGGWSYYCGGL----KNVREVKGLTKGGPGH----EEPIPMSTYGWNLVRL 135 (305)
T ss_dssp SSTHHHHHHHHHHTTSSCCCEEEEEETCTTSHHHHHHHTS----TTEEEEEEECCCSTTS----CCCCCCCSTTGGGEEE
T ss_pred cccHHHHHHHHHHcCCCCCCCEEEEEcCCCCHHHHHHHhc----CCEEEEeccccCchhH----HHHHHhhhcCCCCeEE
Confidence 5555555544444435678899999999999999999987 37999999 4421 11111 1 1 46888
Q ss_pred EEc-cCCCCcccccCCCcEeEEEEeCCCh------hHH---HHHHHHHhccCCCCcEEEEEE
Q 021911 197 IIE-DARHPAKYRMLVGMVDVIFSDVAQP------DQA---RILALNASYFLKAGGHFVISI 248 (305)
Q Consensus 197 ~~~-D~~~~~~~~~~~~~fD~V~~d~~~~------~~~---~~l~~~a~~~LkpGG~lv~s~ 248 (305)
++. |+...+ ..+||+|+||++.. ++. .+|. .+.++|||||.|++.+
T Consensus 136 ~~~~D~~~l~-----~~~fD~V~sd~~~~~g~~~~d~~~~l~~L~-~~~~~LkpGG~~v~kv 191 (305)
T 2p41_A 136 QSGVDVFFIP-----PERCDTLLCDIGESSPNPTVEAGRTLRVLN-LVENWLSNNTQFCVKV 191 (305)
T ss_dssp ECSCCTTTSC-----CCCCSEEEECCCCCCSSHHHHHHHHHHHHH-HHHHHCCTTCEEEEEE
T ss_pred EeccccccCC-----cCCCCEEEECCccccCcchhhHHHHHHHHH-HHHHHhCCCCEEEEEe
Confidence 888 887653 35899999998741 222 3555 7889999999999865
|
| >1p91_A Ribosomal RNA large subunit methyltransferase A; RLMA, RRMA, 23S rRNA, NESG, structural genomics, PSI, protein structure initiative; HET: SAM; 2.80A {Escherichia coli} SCOP: c.66.1.33 | Back alignment and structure |
|---|
Probab=99.29 E-value=7.4e-12 Score=111.30 Aligned_cols=95 Identities=18% Similarity=0.225 Sum_probs=76.2
Q ss_pred CCCCEEEEEecCCCccHHHHHhhhCCCcEEEEEeCChHHHHHHHHHHHcC-CCeEEEEccCCCCcccccCCCcEeEEEEe
Q 021911 142 KPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKR-TNVIPIIEDARHPAKYRMLVGMVDVIFSD 220 (305)
Q Consensus 142 ~~g~~VLDlG~G~G~~t~~la~~~~~~~~V~avD~s~~~~~~l~~~a~~~-~nI~~~~~D~~~~~~~~~~~~~fD~V~~d 220 (305)
.++.+|||+|||+|.++..+++.+ +..+|+++|+|+ .+++.++++ +++.+++.|+...+. ...+||+|++.
T Consensus 84 ~~~~~vLdiG~G~G~~~~~l~~~~-~~~~v~~vD~s~----~~~~~a~~~~~~~~~~~~d~~~~~~---~~~~fD~v~~~ 155 (269)
T 1p91_A 84 DKATAVLDIGCGEGYYTHAFADAL-PEITTFGLDVSK----VAIKAAAKRYPQVTFCVASSHRLPF---SDTSMDAIIRI 155 (269)
T ss_dssp TTCCEEEEETCTTSTTHHHHHHTC-TTSEEEEEESCH----HHHHHHHHHCTTSEEEECCTTSCSB---CTTCEEEEEEE
T ss_pred CCCCEEEEECCCCCHHHHHHHHhC-CCCeEEEEeCCH----HHHHHHHHhCCCcEEEEcchhhCCC---CCCceeEEEEe
Confidence 678999999999999999999986 456999999999 555555544 679999999876542 24689999986
Q ss_pred CCChhHHHHHHHHHhccCCCCcEEEEEEc
Q 021911 221 VAQPDQARILALNASYFLKAGGHFVISIK 249 (305)
Q Consensus 221 ~~~~~~~~~l~~~a~~~LkpGG~lv~s~~ 249 (305)
.+.. .+. ++.++|||||+|+++++
T Consensus 156 ~~~~----~l~-~~~~~L~pgG~l~~~~~ 179 (269)
T 1p91_A 156 YAPC----KAE-ELARVVKPGGWVITATP 179 (269)
T ss_dssp SCCC----CHH-HHHHHEEEEEEEEEEEE
T ss_pred CChh----hHH-HHHHhcCCCcEEEEEEc
Confidence 6532 344 78899999999999984
|
| >3iv6_A Putative Zn-dependent alcohol dehydrogenase; alpha/beta fold, rossmann-fold, structural genomics, PSI-2, structure initiative; HET: SAM; 2.70A {Rhodobacter sphaeroides} | Back alignment and structure |
|---|
Probab=99.28 E-value=5.5e-12 Score=112.62 Aligned_cols=103 Identities=22% Similarity=0.262 Sum_probs=70.3
Q ss_pred CCCCCCEEEEEecCCCccHHHHHhhhCCCcEEEEEeCChHHHHHHHHHHHcCCCeEEEEccCCCCcccccCCCcEeEEEE
Q 021911 140 WIKPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKRTNVIPIIEDARHPAKYRMLVGMVDVIFS 219 (305)
Q Consensus 140 ~~~~g~~VLDlG~G~G~~t~~la~~~~~~~~V~avD~s~~~~~~l~~~a~~~~nI~~~~~D~~~~~~~~~~~~~fD~V~~ 219 (305)
.+.++.+|||||||+|.++..+++.. .+|++||+|+.+++.+.+.+... .+.....|+.... ......+||+|++
T Consensus 42 ~l~~g~~VLDlGcGtG~~a~~La~~g---~~V~gvD~S~~ml~~Ar~~~~~~-~v~~~~~~~~~~~-~~~~~~~fD~Vv~ 116 (261)
T 3iv6_A 42 NIVPGSTVAVIGASTRFLIEKALERG---ASVTVFDFSQRMCDDLAEALADR-CVTIDLLDITAEI-PKELAGHFDFVLN 116 (261)
T ss_dssp TCCTTCEEEEECTTCHHHHHHHHHTT---CEEEEEESCHHHHHHHHHHTSSS-CCEEEECCTTSCC-CGGGTTCCSEEEE
T ss_pred CCCCcCEEEEEeCcchHHHHHHHhcC---CEEEEEECCHHHHHHHHHHHHhc-cceeeeeeccccc-ccccCCCccEEEE
Confidence 57789999999999999999999872 48999999994444333333221 2333333332200 0112468999999
Q ss_pred eCCC-----hhHHHHHHHHHhccCCCCcEEEEEEc
Q 021911 220 DVAQ-----PDQARILALNASYFLKAGGHFVISIK 249 (305)
Q Consensus 220 d~~~-----~~~~~~l~~~a~~~LkpGG~lv~s~~ 249 (305)
+... ++....+. ++.++| |||+|+++.+
T Consensus 117 ~~~l~~~~~~~~~~~l~-~l~~lL-PGG~l~lS~~ 149 (261)
T 3iv6_A 117 DRLINRFTTEEARRACL-GMLSLV-GSGTVRASVK 149 (261)
T ss_dssp ESCGGGSCHHHHHHHHH-HHHHHH-TTSEEEEEEE
T ss_pred hhhhHhCCHHHHHHHHH-HHHHhC-cCcEEEEEec
Confidence 8762 34455665 889999 9999999974
|
| >3sso_A Methyltransferase; macrolide, natural product, rossman fold; HET: SAH; 1.90A {Micromonospora griseorubida} PDB: 3ssn_A* 3ssm_A* | Back alignment and structure |
|---|
Probab=99.27 E-value=1.7e-11 Score=114.94 Aligned_cols=101 Identities=19% Similarity=0.245 Sum_probs=79.1
Q ss_pred CCCCEEEEEecC------CCccHHHHHhhhCCCcEEEEEeCChHHHHHHHHHHHcCCCeEEEEccCCCCcccc---cCCC
Q 021911 142 KPGARVLYLGAA------SGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKRTNVIPIIEDARHPAKYR---MLVG 212 (305)
Q Consensus 142 ~~g~~VLDlG~G------~G~~t~~la~~~~~~~~V~avD~s~~~~~~l~~~a~~~~nI~~~~~D~~~~~~~~---~~~~ 212 (305)
.+..+||||||| +|..++.+++.+.+.++|++||+|+.+ ....++|+++++|+.+++... ...+
T Consensus 215 ~~~~rVLDIGCG~~~~~~TGG~Sl~la~~~fP~a~V~GVDiSp~m-------~~~~~rI~fv~GDa~dlpf~~~l~~~d~ 287 (419)
T 3sso_A 215 NQQVRVLEIGVGGYKHPEWGGGSLRMWKSFFPRGQIYGLDIMDKS-------HVDELRIRTIQGDQNDAEFLDRIARRYG 287 (419)
T ss_dssp TSCCEEEEECCSCTTCSSCCCHHHHHHHHHCTTCEEEEEESSCCG-------GGCBTTEEEEECCTTCHHHHHHHHHHHC
T ss_pred CCCCEEEEEecCCCcCCCCCHHHHHHHHHhCCCCEEEEEECCHHH-------hhcCCCcEEEEecccccchhhhhhcccC
Confidence 346899999999 788888888776577899999999943 223479999999998864220 0147
Q ss_pred cEeEEEEeCCC--hhHHHHHHHHHhccCCCCcEEEEEEcc
Q 021911 213 MVDVIFSDVAQ--PDQARILALNASYFLKAGGHFVISIKA 250 (305)
Q Consensus 213 ~fD~V~~d~~~--~~~~~~l~~~a~~~LkpGG~lv~s~~~ 250 (305)
+||+|+++... +++...|. +++++|||||+|++....
T Consensus 288 sFDlVisdgsH~~~d~~~aL~-el~rvLKPGGvlVi~Dl~ 326 (419)
T 3sso_A 288 PFDIVIDDGSHINAHVRTSFA-ALFPHVRPGGLYVIEDMW 326 (419)
T ss_dssp CEEEEEECSCCCHHHHHHHHH-HHGGGEEEEEEEEEECGG
T ss_pred CccEEEECCcccchhHHHHHH-HHHHhcCCCeEEEEEecc
Confidence 99999998774 45667776 999999999999998743
|
| >4a6d_A Hydroxyindole O-methyltransferase; melatonin, circadian clock; HET: SAM; 2.40A {Homo sapiens} PDB: 4a6e_A* | Back alignment and structure |
|---|
Probab=99.27 E-value=1.3e-10 Score=108.14 Aligned_cols=150 Identities=11% Similarity=0.024 Sum_probs=100.6
Q ss_pred CCCCCCEEEEEecCCCccHHHHHhhhCCCcEEEEEeCChHHHHHHHHHHHcC--CCeEEEEccCCCCcccccCCCcEeEE
Q 021911 140 WIKPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKR--TNVIPIIEDARHPAKYRMLVGMVDVI 217 (305)
Q Consensus 140 ~~~~g~~VLDlG~G~G~~t~~la~~~~~~~~V~avD~s~~~~~~l~~~a~~~--~nI~~~~~D~~~~~~~~~~~~~fD~V 217 (305)
+..+..+|||||||+|.++..+++.+ |..+++..|+ |..+....+..... ++|+++..|+...+ ...+|+|
T Consensus 176 ~~~~~~~v~DvGgG~G~~~~~l~~~~-p~~~~~~~dl-p~v~~~a~~~~~~~~~~rv~~~~gD~~~~~-----~~~~D~~ 248 (353)
T 4a6d_A 176 DLSVFPLMCDLGGGAGALAKECMSLY-PGCKITVFDI-PEVVWTAKQHFSFQEEEQIDFQEGDFFKDP-----LPEADLY 248 (353)
T ss_dssp CGGGCSEEEEETCTTSHHHHHHHHHC-SSCEEEEEEC-HHHHHHHHHHSCC--CCSEEEEESCTTTSC-----CCCCSEE
T ss_pred CcccCCeEEeeCCCCCHHHHHHHHhC-CCceeEeccC-HHHHHHHHHhhhhcccCceeeecCccccCC-----CCCceEE
Confidence 45667899999999999999999986 6778888887 53333333322221 68999999997643 2467999
Q ss_pred EEeCC---Chh--HHHHHHHHHhccCCCCcEEEEEEcccccCCCCchhhhH---------------HHH-HHHHHHCCCc
Q 021911 218 FSDVA---QPD--QARILALNASYFLKAGGHFVISIKANCIDSTVPAEAVF---------------QSE-VKKLQQDQFK 276 (305)
Q Consensus 218 ~~d~~---~~~--~~~~l~~~a~~~LkpGG~lv~s~~~~~i~~~~~~~~v~---------------~~~-~~~l~~~Gf~ 276 (305)
++... .++ ..++|. ++++.|+|||+|++.......+...+....+ .++ .+.|+++||+
T Consensus 249 ~~~~vlh~~~d~~~~~iL~-~~~~al~pgg~lli~e~~~~~~~~~~~~~~~~dl~ml~~~~g~ert~~e~~~ll~~AGf~ 327 (353)
T 4a6d_A 249 ILARVLHDWADGKCSHLLE-RIYHTCKPGGGILVIESLLDEDRRGPLLTQLYSLNMLVQTEGQERTPTHYHMLLSSAGFR 327 (353)
T ss_dssp EEESSGGGSCHHHHHHHHH-HHHHHCCTTCEEEEEECCCCTTSCCCHHHHHHHHHHHHSSSCCCCCHHHHHHHHHHHTCE
T ss_pred EeeeecccCCHHHHHHHHH-HHHhhCCCCCEEEEEEeeeCCCCCCCHHHHHHHHHHHHhCCCcCCCHHHHHHHHHHCCCc
Confidence 88544 233 356676 9999999999999987211111111111110 122 3556899999
Q ss_pred EeEEeecCCCCCceEEEEEEEcCC
Q 021911 277 PFEQVTLEPFERDHACVVGGYRMP 300 (305)
Q Consensus 277 ~~e~~~l~p~~~~~~~vv~~~~~~ 300 (305)
.+++..... .+.+++++|-+.
T Consensus 328 ~v~v~~~~~---~~~~i~ArKgt~ 348 (353)
T 4a6d_A 328 DFQFKKTGA---IYDAILARKGTH 348 (353)
T ss_dssp EEEEECCSS---SCEEEEEECCCC
T ss_pred eEEEEEcCC---ceEEEEEEecCc
Confidence 988875543 477888887654
|
| >3p9c_A Caffeic acid O-methyltransferase; S-adenosylmethionine dependent O-methyltransferase; HET: SAH; 1.80A {Lolium perenne} PDB: 3p9i_A* 3p9k_A* | Back alignment and structure |
|---|
Probab=99.27 E-value=1.3e-10 Score=108.40 Aligned_cols=139 Identities=14% Similarity=0.090 Sum_probs=97.5
Q ss_pred CCCCCEEEEEecCCCccHHHHHhhhCCCcEEEEEeCChHHHHHHHHHHHcCCCeEEEEccCCCCcccccCCCcEeEEEEe
Q 021911 141 IKPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKRTNVIPIIEDARHPAKYRMLVGMVDVIFSD 220 (305)
Q Consensus 141 ~~~g~~VLDlG~G~G~~t~~la~~~~~~~~V~avD~s~~~~~~l~~~a~~~~nI~~~~~D~~~~~~~~~~~~~fD~V~~d 220 (305)
..+..+|||||||+|.++..+++.+ |..+++++|+ + .+++.+++.++|+++..|+.++. +.. |+|++.
T Consensus 199 ~~~~~~vlDvG~G~G~~~~~l~~~~-p~~~~~~~D~-~----~~~~~a~~~~~v~~~~~D~~~~~-----p~~-D~v~~~ 266 (364)
T 3p9c_A 199 FEGLGTLVDVGGGVGATVAAIAAHY-PTIKGVNFDL-P----HVISEAPQFPGVTHVGGDMFKEV-----PSG-DTILMK 266 (364)
T ss_dssp TTTCSEEEEETCTTSHHHHHHHHHC-TTCEEEEEEC-H----HHHTTCCCCTTEEEEECCTTTCC-----CCC-SEEEEE
T ss_pred ccCCCEEEEeCCCCCHHHHHHHHHC-CCCeEEEecC-H----HHHHhhhhcCCeEEEeCCcCCCC-----CCC-CEEEeh
Confidence 5667899999999999999999986 6778999999 6 66777776689999999998632 123 999985
Q ss_pred CCC-----hhHHHHHHHHHhccCCCCcEEEEEEcccccCCCCchh--------h-hH----------HHH-HHHHHHCCC
Q 021911 221 VAQ-----PDQARILALNASYFLKAGGHFVISIKANCIDSTVPAE--------A-VF----------QSE-VKKLQQDQF 275 (305)
Q Consensus 221 ~~~-----~~~~~~l~~~a~~~LkpGG~lv~s~~~~~i~~~~~~~--------~-v~----------~~~-~~~l~~~Gf 275 (305)
... ++...+|. ++++.|||||+|++.............. . .+ .++ .+.|+++||
T Consensus 267 ~vlh~~~d~~~~~~L~-~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~d~~m~~~~~~g~~rt~~e~~~ll~~AGF 345 (364)
T 3p9c_A 267 WILHDWSDQHCATLLK-NCYDALPAHGKVVLVQCILPVNPEANPSSQGVFHVDMIMLAHNPGGRERYEREFQALARGAGF 345 (364)
T ss_dssp SCGGGSCHHHHHHHHH-HHHHHSCTTCEEEEEECCBCSSCCSSHHHHHHHHHHHHHHHHCSSCCCCBHHHHHHHHHHTTC
T ss_pred HHhccCCHHHHHHHHH-HHHHHcCCCCEEEEEEeccCCCCCcchhhhhHHHhHHHHHhcccCCccCCHHHHHHHHHHCCC
Confidence 552 23446666 9999999999999986321111111100 0 00 122 355689999
Q ss_pred cEeEEeecCCCCCceEEEEE
Q 021911 276 KPFEQVTLEPFERDHACVVG 295 (305)
Q Consensus 276 ~~~e~~~l~p~~~~~~~vv~ 295 (305)
+.+++..+... +.++.+
T Consensus 346 ~~v~~~~~~~~---~~vie~ 362 (364)
T 3p9c_A 346 TGVKSTYIYAN---AWAIEF 362 (364)
T ss_dssp CEEEEEEEETT---EEEEEE
T ss_pred ceEEEEEcCCc---eEEEEE
Confidence 99998876554 454444
|
| >1vbf_A 231AA long hypothetical protein-L-isoaspartate O- methyltransferase; trimeric coiled coil assembly; 2.80A {Sulfolobus tokodaii} SCOP: c.66.1.7 | Back alignment and structure |
|---|
Probab=99.27 E-value=3.5e-11 Score=104.41 Aligned_cols=109 Identities=20% Similarity=0.238 Sum_probs=80.9
Q ss_pred HHHHHHHccccccCCCCCCEEEEEecCCCccHHHHHhhhCCCcEEEEEeCChHHHHHHHHHHHcCCCeEEEEccCCCCcc
Q 021911 127 KLAAAVLGGVDNIWIKPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKRTNVIPIIEDARHPAK 206 (305)
Q Consensus 127 ~l~a~ll~~l~~~~~~~g~~VLDlG~G~G~~t~~la~~~~~~~~V~avD~s~~~~~~l~~~a~~~~nI~~~~~D~~~~~~ 206 (305)
.+...++..+ .+.++.+|||+|||+|.++..+++.. .+|+++|+|+..+..+.+......++.+++.|+.....
T Consensus 57 ~~~~~~~~~~---~~~~~~~vLdiG~G~G~~~~~l~~~~---~~v~~vD~~~~~~~~a~~~~~~~~~v~~~~~d~~~~~~ 130 (231)
T 1vbf_A 57 NLGIFMLDEL---DLHKGQKVLEIGTGIGYYTALIAEIV---DKVVSVEINEKMYNYASKLLSYYNNIKLILGDGTLGYE 130 (231)
T ss_dssp HHHHHHHHHT---TCCTTCEEEEECCTTSHHHHHHHHHS---SEEEEEESCHHHHHHHHHHHTTCSSEEEEESCGGGCCG
T ss_pred HHHHHHHHhc---CCCCCCEEEEEcCCCCHHHHHHHHHc---CEEEEEeCCHHHHHHHHHHHhhcCCeEEEECCcccccc
Confidence 3444444333 46788999999999999999999984 58999999995555554444433489999999876322
Q ss_pred cccCCCcEeEEEEeCCChhHHHHHHHHHhccCCCCcEEEEEE
Q 021911 207 YRMLVGMVDVIFSDVAQPDQARILALNASYFLKAGGHFVISI 248 (305)
Q Consensus 207 ~~~~~~~fD~V~~d~~~~~~~~~l~~~a~~~LkpGG~lv~s~ 248 (305)
...+||+|+++.+..... . ++.++|||||+|++++
T Consensus 131 ---~~~~fD~v~~~~~~~~~~---~-~~~~~L~pgG~l~~~~ 165 (231)
T 1vbf_A 131 ---EEKPYDRVVVWATAPTLL---C-KPYEQLKEGGIMILPI 165 (231)
T ss_dssp ---GGCCEEEEEESSBBSSCC---H-HHHHTEEEEEEEEEEE
T ss_pred ---cCCCccEEEECCcHHHHH---H-HHHHHcCCCcEEEEEE
Confidence 246899999987743322 2 5668999999999997
|
| >2oxt_A Nucleoside-2'-O-methyltransferase; flavivirus, viral enzyme, RNA capping, S-adenosyl-L-methionine, viral protein; HET: SAM; 2.90A {Meaban virus} | Back alignment and structure |
|---|
Probab=99.26 E-value=1.4e-12 Score=116.84 Aligned_cols=109 Identities=19% Similarity=0.149 Sum_probs=78.6
Q ss_pred hhHHHHHHHccccccCCCCCCEEEEEecCCCccHHHHHhhhCCCcEEEEEeCChHHHHHHHHHHHcC--C------CeEE
Q 021911 125 RSKLAAAVLGGVDNIWIKPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKR--T------NVIP 196 (305)
Q Consensus 125 ~s~l~a~ll~~l~~~~~~~g~~VLDlG~G~G~~t~~la~~~~~~~~V~avD~s~~~~~~l~~~a~~~--~------nI~~ 196 (305)
.+..+..+...++...++++.+|||||||+|.++..+++. ++|++||+++ . + ..+++. . +|.+
T Consensus 56 ~sR~a~KL~~i~~~~~~~~g~~VLDlGcGtG~~s~~la~~----~~V~gvD~s~-m---~-~~a~~~~~~~~~~~~~v~~ 126 (265)
T 2oxt_A 56 VSRGTAKLAWMEERGYVELTGRVVDLGCGRGGWSYYAASR----PHVMDVRAYT-L---G-VGGHEVPRITESYGWNIVK 126 (265)
T ss_dssp SSTHHHHHHHHHHHTSCCCCEEEEEESCTTSHHHHHHHTS----TTEEEEEEEC-C---C-CSSCCCCCCCCBTTGGGEE
T ss_pred cchHHHHHHHHHHcCCCCCCCEEEEeCcCCCHHHHHHHHc----CcEEEEECch-h---h-hhhhhhhhhhhccCCCeEE
Confidence 4444444444444445678999999999999999999987 4899999998 2 1 111111 2 7899
Q ss_pred E--EccCCCCcccccCCCcEeEEEEeCC----Ch--hHH---HHHHHHHhccCCCCc--EEEEEE
Q 021911 197 I--IEDARHPAKYRMLVGMVDVIFSDVA----QP--DQA---RILALNASYFLKAGG--HFVISI 248 (305)
Q Consensus 197 ~--~~D~~~~~~~~~~~~~fD~V~~d~~----~~--~~~---~~l~~~a~~~LkpGG--~lv~s~ 248 (305)
+ +.|+++++ ..+||+|+||++ .+ ++. .+|. .+.++||||| .|++.+
T Consensus 127 ~~~~~D~~~l~-----~~~fD~V~sd~~~~~~~~~~d~~~~l~~L~-~~~r~LkpGG~~~fv~kv 185 (265)
T 2oxt_A 127 FKSRVDIHTLP-----VERTDVIMCDVGESSPKWSVESERTIKILE-LLEKWKVKNPSADFVVKV 185 (265)
T ss_dssp EECSCCTTTSC-----CCCCSEEEECCCCCCSCHHHHHHHHHHHHH-HHHHHHHHCTTCEEEEEE
T ss_pred EecccCHhHCC-----CCCCcEEEEeCcccCCccchhHHHHHHHHH-HHHHHhccCCCeEEEEEe
Confidence 9 88998754 468999999876 11 112 3555 8889999999 999876
|
| >2jjq_A Uncharacterized RNA methyltransferase pyrab10780; metal-binding, tRNA methyltransferase, S-adenosyl-L-methionine, iron, 4Fe-4S, iron-sulfur; HET: SAH; 1.8A {Pyrococcus abyssi} PDB: 2vs1_A* | Back alignment and structure |
|---|
Probab=99.26 E-value=2.1e-11 Score=116.23 Aligned_cols=128 Identities=16% Similarity=0.094 Sum_probs=91.1
Q ss_pred CCCCCEEEEEecCCCccHHHHHhhhCCCcEEEEEeCChHHHHHHHHHHHcC-CCeEEEEccCCCCcccccCCCcEeEEEE
Q 021911 141 IKPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKR-TNVIPIIEDARHPAKYRMLVGMVDVIFS 219 (305)
Q Consensus 141 ~~~g~~VLDlG~G~G~~t~~la~~~~~~~~V~avD~s~~~~~~l~~~a~~~-~nI~~~~~D~~~~~~~~~~~~~fD~V~~ 219 (305)
+.++.+|||+|||+|.++..+|+.. .+|++||+|+.+++.+.++++.+ -++.+++.|+.+... ..||+|++
T Consensus 288 ~~~~~~VLDlgcG~G~~sl~la~~~---~~V~gvD~s~~ai~~A~~n~~~ngl~v~~~~~d~~~~~~-----~~fD~Vv~ 359 (425)
T 2jjq_A 288 LVEGEKILDMYSGVGTFGIYLAKRG---FNVKGFDSNEFAIEMARRNVEINNVDAEFEVASDREVSV-----KGFDTVIV 359 (425)
T ss_dssp HCCSSEEEEETCTTTHHHHHHHHTT---CEEEEEESCHHHHHHHHHHHHHHTCCEEEEECCTTTCCC-----TTCSEEEE
T ss_pred cCCCCEEEEeeccchHHHHHHHHcC---CEEEEEECCHHHHHHHHHHHHHcCCcEEEEECChHHcCc-----cCCCEEEE
Confidence 4677899999999999999999872 48999999997777766666543 128999999987642 28999999
Q ss_pred eCCChhHHHHHHHHHhccCCCCcEEEEEEcccccCCCCchhhhHHHHHHHHHHCCCcEeEEeecCCCCCce
Q 021911 220 DVAQPDQARILALNASYFLKAGGHFVISIKANCIDSTVPAEAVFQSEVKKLQQDQFKPFEQVTLEPFERDH 290 (305)
Q Consensus 220 d~~~~~~~~~l~~~a~~~LkpGG~lv~s~~~~~i~~~~~~~~v~~~~~~~l~~~Gf~~~e~~~l~p~~~~~ 290 (305)
|+|.....+.+. +....|+|+|.++++. ++. .++..+..|. |++.+...++.|...+
T Consensus 360 dPPr~g~~~~~~-~~l~~l~p~givyvsc---------~p~-tlarDl~~l~---y~l~~~~~~DmFP~T~ 416 (425)
T 2jjq_A 360 DPPRAGLHPRLV-KRLNREKPGVIVYVSC---------NPE-TFARDVKMLD---YRIDEIVALDMFPHTP 416 (425)
T ss_dssp CCCTTCSCHHHH-HHHHHHCCSEEEEEES---------CHH-HHHHHHHHSS---CCEEEEEEECCSTTSS
T ss_pred cCCccchHHHHH-HHHHhcCCCcEEEEEC---------ChH-HHHhHHhhCe---EEEEEEEEECcCCCCc
Confidence 999543222222 2334599999998884 222 2445555554 8887776666665433
|
| >2qe6_A Uncharacterized protein TFU_2867; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; HET: NEP SAM; 1.95A {Thermobifida fusca} | Back alignment and structure |
|---|
Probab=99.26 E-value=6.4e-11 Score=106.39 Aligned_cols=105 Identities=15% Similarity=0.097 Sum_probs=77.5
Q ss_pred CCCEEEEEecCC---CccHHHHHhhhCCCcEEEEEeCChHHHHHHHHHHHcCCCeEEEEccCCCCccc--------ccCC
Q 021911 143 PGARVLYLGAAS---GTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKRTNVIPIIEDARHPAKY--------RMLV 211 (305)
Q Consensus 143 ~g~~VLDlG~G~---G~~t~~la~~~~~~~~V~avD~s~~~~~~l~~~a~~~~nI~~~~~D~~~~~~~--------~~~~ 211 (305)
...+|||||||+ |.++..++.. .+..+|++||+|+.++....+.+....++.+++.|+.++... ....
T Consensus 77 ~~~~vLDlGcG~pt~G~~~~~~~~~-~p~~~v~~vD~sp~~l~~Ar~~~~~~~~v~~~~~D~~~~~~~~~~~~~~~~~d~ 155 (274)
T 2qe6_A 77 GISQFLDLGSGLPTVQNTHEVAQSV-NPDARVVYVDIDPMVLTHGRALLAKDPNTAVFTADVRDPEYILNHPDVRRMIDF 155 (274)
T ss_dssp CCCEEEEETCCSCCSSCHHHHHHHH-CTTCEEEEEESSHHHHHHHHHHHTTCTTEEEEECCTTCHHHHHHSHHHHHHCCT
T ss_pred CCCEEEEECCCCCCCChHHHHHHHh-CCCCEEEEEECChHHHHHHHHhcCCCCCeEEEEeeCCCchhhhccchhhccCCC
Confidence 447999999999 9877665554 467899999999955544444443336899999999875311 1122
Q ss_pred CcEeEEEEeCC---Ch--hHHHHHHHHHhccCCCCcEEEEEEc
Q 021911 212 GMVDVIFSDVA---QP--DQARILALNASYFLKAGGHFVISIK 249 (305)
Q Consensus 212 ~~fD~V~~d~~---~~--~~~~~l~~~a~~~LkpGG~lv~s~~ 249 (305)
.+||+|++... .+ +...++. ++++.|||||+|++++.
T Consensus 156 ~~~d~v~~~~vlh~~~d~~~~~~l~-~~~~~L~pGG~l~i~~~ 197 (274)
T 2qe6_A 156 SRPAAIMLVGMLHYLSPDVVDRVVG-AYRDALAPGSYLFMTSL 197 (274)
T ss_dssp TSCCEEEETTTGGGSCTTTHHHHHH-HHHHHSCTTCEEEEEEE
T ss_pred CCCEEEEEechhhhCCcHHHHHHHH-HHHHhCCCCcEEEEEEe
Confidence 58999998664 22 3677777 99999999999999983
|
| >3lst_A CALO1 methyltransferase; calicheamicin, enediyne, SAH, STRU genomics, PSI-2, protein structure initiative; HET: SAH; 2.40A {Micromonospora echinospora} | Back alignment and structure |
|---|
Probab=99.25 E-value=3.5e-11 Score=111.50 Aligned_cols=142 Identities=14% Similarity=0.027 Sum_probs=94.6
Q ss_pred cCCCCCCEEEEEecCCCccHHHHHhhhCCCcEEEEEeCChHHHHHHHHHHH-----cCCCeEEEEccCCCCcccccCCCc
Q 021911 139 IWIKPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAK-----KRTNVIPIIEDARHPAKYRMLVGM 213 (305)
Q Consensus 139 ~~~~~g~~VLDlG~G~G~~t~~la~~~~~~~~V~avD~s~~~~~~l~~~a~-----~~~nI~~~~~D~~~~~~~~~~~~~ 213 (305)
+.+.+..+|||+|||+|.++..+++.+ +..+++++|+++ ++.... ..++|+++..|+.... + .
T Consensus 180 ~~~~~~~~vLDvG~G~G~~~~~l~~~~-p~~~~~~~D~~~-----~~~~~~~~~~~~~~~v~~~~~d~~~~~-----p-~ 247 (348)
T 3lst_A 180 GDFPATGTVADVGGGRGGFLLTVLREH-PGLQGVLLDRAE-----VVARHRLDAPDVAGRWKVVEGDFLREV-----P-H 247 (348)
T ss_dssp SCCCSSEEEEEETCTTSHHHHHHHHHC-TTEEEEEEECHH-----HHTTCCCCCGGGTTSEEEEECCTTTCC-----C-C
T ss_pred CCccCCceEEEECCccCHHHHHHHHHC-CCCEEEEecCHH-----HhhcccccccCCCCCeEEEecCCCCCC-----C-C
Confidence 356678999999999999999999986 577899999954 222111 1157999999997321 3 8
Q ss_pred EeEEEEeCC---ChhH--HHHHHHHHhccCCCCcEEEEEEcccccCCCCchhhh--------------HHHH-HHHHHHC
Q 021911 214 VDVIFSDVA---QPDQ--ARILALNASYFLKAGGHFVISIKANCIDSTVPAEAV--------------FQSE-VKKLQQD 273 (305)
Q Consensus 214 fD~V~~d~~---~~~~--~~~l~~~a~~~LkpGG~lv~s~~~~~i~~~~~~~~v--------------~~~~-~~~l~~~ 273 (305)
||+|++... .++. ..+|. ++++.|||||+|++................ -.++ .+.|+++
T Consensus 248 ~D~v~~~~vlh~~~d~~~~~~L~-~~~~~LkpgG~l~i~e~~~~~~~~~~~~~~~d~~~~~~~~~~~~t~~e~~~ll~~a 326 (348)
T 3lst_A 248 ADVHVLKRILHNWGDEDSVRILT-NCRRVMPAHGRVLVIDAVVPEGNDAHQSKEMDFMMLAARTGQERTAAELEPLFTAA 326 (348)
T ss_dssp CSEEEEESCGGGSCHHHHHHHHH-HHHHTCCTTCEEEEEECCBCSSSSCCHHHHHHHHHHHTTSCCCCBHHHHHHHHHHT
T ss_pred CcEEEEehhccCCCHHHHHHHHH-HHHHhcCCCCEEEEEEeccCCCCCcchhhhcChhhhhcCCCcCCCHHHHHHHHHHC
Confidence 999998655 2333 57776 999999999999998732111111100000 1122 3566899
Q ss_pred CCcEeEEeecCCCCCceEEEEEE
Q 021911 274 QFKPFEQVTLEPFERDHACVVGG 296 (305)
Q Consensus 274 Gf~~~e~~~l~p~~~~~~~vv~~ 296 (305)
||+++++....++ +.++.++
T Consensus 327 Gf~~~~~~~~~~~---~~vie~~ 346 (348)
T 3lst_A 327 GLRLDRVVGTSSV---MSIAVGV 346 (348)
T ss_dssp TEEEEEEEECSSS---CEEEEEE
T ss_pred CCceEEEEECCCC---cEEEEEE
Confidence 9999988763333 4555544
|
| >2b2c_A Spermidine synthase; beta-alpha, transferase; 2.50A {Caenorhabditis elegans} SCOP: c.66.1.17 | Back alignment and structure |
|---|
Probab=99.25 E-value=5.8e-11 Score=108.80 Aligned_cols=146 Identities=14% Similarity=0.058 Sum_probs=95.8
Q ss_pred CCCEEEEEecCCCccHHHHHhhhCCCcEEEEEeCChHHHHHHHHHHHc------CCCeEEEEccCCCCcccccCCCcEeE
Q 021911 143 PGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKK------RTNVIPIIEDARHPAKYRMLVGMVDV 216 (305)
Q Consensus 143 ~g~~VLDlG~G~G~~t~~la~~~~~~~~V~avD~s~~~~~~l~~~a~~------~~nI~~~~~D~~~~~~~~~~~~~fD~ 216 (305)
...+|||||||+|..+..+++.. +..+|++||+|+..++.+.+.... .++|++++.|+...... ...+||+
T Consensus 108 ~~~~VLdIG~G~G~~~~~l~~~~-~~~~v~~vDid~~~i~~Ar~~~~~~~~~~~~~rv~~~~~D~~~~l~~--~~~~fD~ 184 (314)
T 2b2c_A 108 DPKRVLIIGGGDGGILREVLKHE-SVEKVTMCEIDEMVIDVAKKFLPGMSCGFSHPKLDLFCGDGFEFLKN--HKNEFDV 184 (314)
T ss_dssp SCCEEEEESCTTSHHHHHHTTCT-TCCEEEEECSCHHHHHHHHHHCTTTSGGGGCTTEEEECSCHHHHHHH--CTTCEEE
T ss_pred CCCEEEEEcCCcCHHHHHHHHcC-CCCEEEEEECCHHHHHHHHHHHHHhccccCCCCEEEEEChHHHHHHh--cCCCceE
Confidence 45899999999999999999874 457999999999665555554432 25799999998764322 2468999
Q ss_pred EEEeCCChh----H---HHHHHHHHhccCCCCcEEEEEEcccccCCCCchhhhHHHHHHHHHHCCCcEeEE--eecCCCC
Q 021911 217 IFSDVAQPD----Q---ARILALNASYFLKAGGHFVISIKANCIDSTVPAEAVFQSEVKKLQQDQFKPFEQ--VTLEPFE 287 (305)
Q Consensus 217 V~~d~~~~~----~---~~~l~~~a~~~LkpGG~lv~s~~~~~i~~~~~~~~v~~~~~~~l~~~Gf~~~e~--~~l~p~~ 287 (305)
|++|++.+. . .+++. ++.++|||||.|++.. .+... ....+....+.+++. |...+. ..+..|.
T Consensus 185 Ii~d~~~~~~~~~~l~t~~~l~-~~~~~LkpgG~lv~~~--~~~~~---~~~~~~~~~~~l~~v-F~~v~~~~~~iP~~~ 257 (314)
T 2b2c_A 185 IITDSSDPVGPAESLFGQSYYE-LLRDALKEDGILSSQG--ESVWL---HLPLIAHLVAFNRKI-FPAVTYAQSIVSTYP 257 (314)
T ss_dssp EEECCC-------------HHH-HHHHHEEEEEEEEEEC--CCTTT---CHHHHHHHHHHHHHH-CSEEEEEEEECTTSG
T ss_pred EEEcCCCCCCcchhhhHHHHHH-HHHhhcCCCeEEEEEC--CCccc---CHHHHHHHHHHHHHH-CCcceEEEEEecCcC
Confidence 999986431 1 45665 8999999999999985 22111 112233334455444 654443 3455554
Q ss_pred Cce-EEEEEEEc
Q 021911 288 RDH-ACVVGGYR 298 (305)
Q Consensus 288 ~~~-~~vv~~~~ 298 (305)
..+ .++++.++
T Consensus 258 ~g~~g~~~ask~ 269 (314)
T 2b2c_A 258 SGSMGYLICAKN 269 (314)
T ss_dssp GGEEEEEEEESS
T ss_pred CCceEEEEEeCC
Confidence 444 56777665
|
| >2avn_A Ubiquinone/menaquinone biosynthesis methyltransfe related protein; ubiquinone/menaquinone biosynthesis methyltransferase-relate protein; HET: SAI; 2.35A {Thermotoga maritima} SCOP: c.66.1.41 | Back alignment and structure |
|---|
Probab=99.24 E-value=2.4e-11 Score=107.74 Aligned_cols=96 Identities=15% Similarity=0.212 Sum_probs=74.4
Q ss_pred CCCEEEEEecCCCccHHHHHhhhCCCcEEEEEeCChHHHHHHHHHHHcCCCeEEEEccCCCCcccccCCCcEeEEEEeCC
Q 021911 143 PGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKRTNVIPIIEDARHPAKYRMLVGMVDVIFSDVA 222 (305)
Q Consensus 143 ~g~~VLDlG~G~G~~t~~la~~~~~~~~V~avD~s~~~~~~l~~~a~~~~nI~~~~~D~~~~~~~~~~~~~fD~V~~d~~ 222 (305)
++.+|||+|||+|.++..+++. ..+|+++|+|+ .+++.++++..-.+++.|+...+ ....+||+|++...
T Consensus 54 ~~~~vLDiGcG~G~~~~~l~~~---~~~v~gvD~s~----~~l~~a~~~~~~~~~~~d~~~~~---~~~~~fD~v~~~~~ 123 (260)
T 2avn_A 54 NPCRVLDLGGGTGKWSLFLQER---GFEVVLVDPSK----EMLEVAREKGVKNVVEAKAEDLP---FPSGAFEAVLALGD 123 (260)
T ss_dssp SCCEEEEETCTTCHHHHHHHTT---TCEEEEEESCH----HHHHHHHHHTCSCEEECCTTSCC---SCTTCEEEEEECSS
T ss_pred CCCeEEEeCCCcCHHHHHHHHc---CCeEEEEeCCH----HHHHHHHhhcCCCEEECcHHHCC---CCCCCEEEEEEcch
Confidence 7789999999999999999987 24899999999 45555544311127888987654 23578999999654
Q ss_pred ----ChhHHHHHHHHHhccCCCCcEEEEEEc
Q 021911 223 ----QPDQARILALNASYFLKAGGHFVISIK 249 (305)
Q Consensus 223 ----~~~~~~~l~~~a~~~LkpGG~lv~s~~ 249 (305)
.++...++. ++.++|||||.|++++.
T Consensus 124 ~~~~~~~~~~~l~-~~~~~LkpgG~l~~~~~ 153 (260)
T 2avn_A 124 VLSYVENKDKAFS-EIRRVLVPDGLLIATVD 153 (260)
T ss_dssp HHHHCSCHHHHHH-HHHHHEEEEEEEEEEEE
T ss_pred hhhccccHHHHHH-HHHHHcCCCeEEEEEeC
Confidence 355677777 99999999999999874
|
| >1fp2_A Isoflavone O-methyltransferase; protein-product complex; HET: SAH HMO; 1.40A {Medicago sativa} SCOP: a.4.5.29 c.66.1.12 PDB: 1fpx_A* 2qyo_A* | Back alignment and structure |
|---|
Probab=99.24 E-value=5.4e-11 Score=110.30 Aligned_cols=139 Identities=14% Similarity=0.103 Sum_probs=96.9
Q ss_pred CCCCCEEEEEecCCCccHHHHHhhhCCCcEEEEEeCChHHHHHHHHHHHcCCCeEEEEccCCCCcccccCCCcEeEEEEe
Q 021911 141 IKPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKRTNVIPIIEDARHPAKYRMLVGMVDVIFSD 220 (305)
Q Consensus 141 ~~~g~~VLDlG~G~G~~t~~la~~~~~~~~V~avD~s~~~~~~l~~~a~~~~nI~~~~~D~~~~~~~~~~~~~fD~V~~d 220 (305)
+.+..+|||+|||+|.++..+++.+ +..+++++|+ + .+++.+++.++|+++..|+.+.. + .||+|++.
T Consensus 186 ~~~~~~vlDvG~G~G~~~~~l~~~~-p~~~~~~~D~-~----~~~~~a~~~~~v~~~~~d~~~~~-----p-~~D~v~~~ 253 (352)
T 1fp2_A 186 FDGLESIVDVGGGTGTTAKIICETF-PKLKCIVFDR-P----QVVENLSGSNNLTYVGGDMFTSI-----P-NADAVLLK 253 (352)
T ss_dssp HTTCSEEEEETCTTSHHHHHHHHHC-TTCEEEEEEC-H----HHHTTCCCBTTEEEEECCTTTCC-----C-CCSEEEEE
T ss_pred cccCceEEEeCCCccHHHHHHHHHC-CCCeEEEeeC-H----HHHhhcccCCCcEEEeccccCCC-----C-CccEEEee
Confidence 4567899999999999999999886 5679999999 8 66777766678999999997631 2 49999986
Q ss_pred CC---ChhHH--HHHHHHHhccCCC---CcEEEEEEcccccCCCCc---hhh-h--------------HHHHHHHHHHCC
Q 021911 221 VA---QPDQA--RILALNASYFLKA---GGHFVISIKANCIDSTVP---AEA-V--------------FQSEVKKLQQDQ 274 (305)
Q Consensus 221 ~~---~~~~~--~~l~~~a~~~Lkp---GG~lv~s~~~~~i~~~~~---~~~-v--------------~~~~~~~l~~~G 274 (305)
.. .++.. +++. ++++.||| ||+|++...........+ ... . ..+..+.++++|
T Consensus 254 ~~lh~~~d~~~~~~l~-~~~~~L~p~~~gG~l~i~e~~~~~~~~~~~~~~~~~~~d~~~~~~~g~~~t~~e~~~ll~~aG 332 (352)
T 1fp2_A 254 YILHNWTDKDCLRILK-KCKEAVTNDGKRGKVTIIDMVIDKKKDENQVTQIKLLMDVNMACLNGKERNEEEWKKLFIEAG 332 (352)
T ss_dssp SCGGGSCHHHHHHHHH-HHHHHHSGGGCCCEEEEEECEECTTTSCHHHHHHHHHHHHHGGGGTCCCEEHHHHHHHHHHTT
T ss_pred hhhccCCHHHHHHHHH-HHHHhCCCCCCCcEEEEEEeecCCCCCccchhhhHhhccHHHHhccCCCCCHHHHHHHHHHCC
Confidence 65 23333 6776 99999999 999999863211111100 000 0 112245668999
Q ss_pred CcEeEEeecCCCCCceEEEEE
Q 021911 275 FKPFEQVTLEPFERDHACVVG 295 (305)
Q Consensus 275 f~~~e~~~l~p~~~~~~~vv~ 295 (305)
|+.+++.....+ ..++.+
T Consensus 333 f~~~~~~~~~~~---~~vie~ 350 (352)
T 1fp2_A 333 FQHYKISPLTGF---LSLIEI 350 (352)
T ss_dssp CCEEEEEEEETT---EEEEEE
T ss_pred CCeeEEEecCCC---cEEEEE
Confidence 999888764332 455544
|
| >2wa2_A Non-structural protein 5; transferase, S-adenosyl-L- methionine, virion, membrane, flavivirus, N7-methyltransferase, 2'-O-methyltransferase; HET: SAM; 1.80A {Modoc virus} PDB: 2wa1_A* | Back alignment and structure |
|---|
Probab=99.24 E-value=2.2e-12 Score=116.19 Aligned_cols=110 Identities=15% Similarity=0.116 Sum_probs=78.5
Q ss_pred hhhHHHHHHHccccccCCCCCCEEEEEecCCCccHHHHHhhhCCCcEEEEEeCChHHHHHHHHHHHcC--C------CeE
Q 021911 124 FRSKLAAAVLGGVDNIWIKPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKR--T------NVI 195 (305)
Q Consensus 124 ~~s~l~a~ll~~l~~~~~~~g~~VLDlG~G~G~~t~~la~~~~~~~~V~avD~s~~~~~~l~~~a~~~--~------nI~ 195 (305)
|.+..+..+...++...++++.+|||||||+|.++..+++. ++|++||+|+ . +..++++ . +|.
T Consensus 63 ~~sR~a~KL~~i~~~~~~~~g~~VLDlGcGtG~~s~~la~~----~~V~gVD~s~-m----~~~a~~~~~~~~~~~~~v~ 133 (276)
T 2wa2_A 63 AVSRGTAKLAWIDERGGVELKGTVVDLGCGRGSWSYYAASQ----PNVREVKAYT-L----GTSGHEKPRLVETFGWNLI 133 (276)
T ss_dssp --CHHHHHHHHHHHTTSCCCCEEEEEESCTTCHHHHHHHTS----TTEEEEEEEC-C----CCTTSCCCCCCCCTTGGGE
T ss_pred cCchHHHHHHHHHHcCCCCCCCEEEEeccCCCHHHHHHHHc----CCEEEEECch-h----hhhhhhchhhhhhcCCCeE
Confidence 35555555544444445678999999999999999999987 4899999998 2 1112111 2 789
Q ss_pred EE--EccCCCCcccccCCCcEeEEEEeCC----Ch--hHH---HHHHHHHhccCCCCc--EEEEEE
Q 021911 196 PI--IEDARHPAKYRMLVGMVDVIFSDVA----QP--DQA---RILALNASYFLKAGG--HFVISI 248 (305)
Q Consensus 196 ~~--~~D~~~~~~~~~~~~~fD~V~~d~~----~~--~~~---~~l~~~a~~~LkpGG--~lv~s~ 248 (305)
++ +.|+++++ ..+||+|+||++ .+ ++. .+|. .+.++||||| .|++.+
T Consensus 134 ~~~~~~D~~~l~-----~~~fD~Vvsd~~~~~~~~~~d~~~~l~~L~-~~~r~LkpGG~~~~v~~~ 193 (276)
T 2wa2_A 134 TFKSKVDVTKME-----PFQADTVLCDIGESNPTAAVEASRTLTVLN-VISRWLEYNQGCGFCVKV 193 (276)
T ss_dssp EEECSCCGGGCC-----CCCCSEEEECCCCCCSCHHHHHHHHHHHHH-HHHHHHHHSTTCEEEEEE
T ss_pred EEeccCcHhhCC-----CCCcCEEEECCCcCCCchhhhHHHHHHHHH-HHHHHhccCCCcEEEEEe
Confidence 99 88987653 468999999876 11 112 3555 8889999999 999876
|
| >2cmg_A Spermidine synthase; transferase, putrescine aminopropyltransferase, spermidine biosynthesis, polyamine biosynthesis, SPEE; 2.0A {Helicobacter pylori} PDB: 2cmh_A | Back alignment and structure |
|---|
Probab=99.24 E-value=2.4e-10 Score=102.09 Aligned_cols=135 Identities=11% Similarity=0.038 Sum_probs=94.6
Q ss_pred CCCEEEEEecCCCccHHHHHhhhCCCcEEEEEeCChHHHHHHHHHHHcC----------CCeEEEEccCCCCcccccCCC
Q 021911 143 PGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKR----------TNVIPIIEDARHPAKYRMLVG 212 (305)
Q Consensus 143 ~g~~VLDlG~G~G~~t~~la~~~~~~~~V~avD~s~~~~~~l~~~a~~~----------~nI~~~~~D~~~~~~~~~~~~ 212 (305)
...+|||||||+|.++..+++. + .+|++||+++ .+++.++++ +++++++.|+.... +
T Consensus 72 ~~~~VL~iG~G~G~~~~~ll~~--~-~~v~~veid~----~~i~~ar~~~~~~~~~~~~~rv~~~~~D~~~~~------~ 138 (262)
T 2cmg_A 72 ELKEVLIVDGFDLELAHQLFKY--D-THIDFVQADE----KILDSFISFFPHFHEVKNNKNFTHAKQLLDLDI------K 138 (262)
T ss_dssp CCCEEEEESSCCHHHHHHHTTS--S-CEEEEECSCH----HHHGGGTTTSTTHHHHHTCTTEEEESSGGGSCC------C
T ss_pred CCCEEEEEeCCcCHHHHHHHhC--C-CEEEEEECCH----HHHHHHHHHHHhhccccCCCeEEEEechHHHHH------h
Confidence 4579999999999999999987 4 6999999999 555555432 47899999987653 6
Q ss_pred cEeEEEEeCCChhHHHHHHHHHhccCCCCcEEEEEEcccccCCCCchhhhHHHHHHHHHHCCCcEeEEee-cCCCCCceE
Q 021911 213 MVDVIFSDVAQPDQARILALNASYFLKAGGHFVISIKANCIDSTVPAEAVFQSEVKKLQQDQFKPFEQVT-LEPFERDHA 291 (305)
Q Consensus 213 ~fD~V~~d~~~~~~~~~l~~~a~~~LkpGG~lv~s~~~~~i~~~~~~~~v~~~~~~~l~~~Gf~~~e~~~-l~p~~~~~~ 291 (305)
+||+|++|.+.|.. .+. ++.+.|||||.|++... +... . ...+......+++. |....... .-|....+.
T Consensus 139 ~fD~Ii~d~~dp~~--~~~-~~~~~L~pgG~lv~~~~--~~~~--~-~~~~~~~~~~l~~~-F~~~~~~~~~vP~~g~~~ 209 (262)
T 2cmg_A 139 KYDLIFCLQEPDIH--RID-GLKRMLKEDGVFISVAK--HPLL--E-HVSMQNALKNMGGV-FSVAMPFVAPLRILSNKG 209 (262)
T ss_dssp CEEEEEESSCCCHH--HHH-HHHTTEEEEEEEEEEEE--CTTT--C-HHHHHHHHHHHHTT-CSEEEEECCTTCTTCCEE
T ss_pred hCCEEEECCCChHH--HHH-HHHHhcCCCcEEEEEcC--Cccc--C-HHHHHHHHHHHHHh-CCceEEEEEccCCCcccE
Confidence 89999999876653 555 99999999999999752 2111 1 12344445555554 76555432 233344566
Q ss_pred EEEEEEcC
Q 021911 292 CVVGGYRM 299 (305)
Q Consensus 292 ~vv~~~~~ 299 (305)
++++.+..
T Consensus 210 ~~~as~~~ 217 (262)
T 2cmg_A 210 YIYASFKT 217 (262)
T ss_dssp EEEEESSC
T ss_pred EEEeeCCC
Confidence 67777653
|
| >1o9g_A RRNA methyltransferase; antibiotic resistance, Se-MAD; 1.5A {Streptomyces viridochromogenes} SCOP: c.66.1.29 PDB: 1o9h_A | Back alignment and structure |
|---|
Probab=99.23 E-value=2.3e-11 Score=107.24 Aligned_cols=106 Identities=12% Similarity=0.025 Sum_probs=76.0
Q ss_pred CCCCEEEEEecCCCccHHHHHhhh-CCCcEEEEEeCChHHHHHHHHHHHcCC------C---------------------
Q 021911 142 KPGARVLYLGAASGTTVSHVSDIV-GPNGVVYAVEFSHRSGRDLVNMAKKRT------N--------------------- 193 (305)
Q Consensus 142 ~~g~~VLDlG~G~G~~t~~la~~~-~~~~~V~avD~s~~~~~~l~~~a~~~~------n--------------------- 193 (305)
.++.+|||+|||+|.++..++..+ .+..+|+++|+|+.+++.+.+.+.... +
T Consensus 50 ~~~~~vLD~gcGsG~~~~~la~~~~~~~~~v~gvDis~~~l~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 129 (250)
T 1o9g_A 50 DGPVTLWDPCCGSGYLLTVLGLLHRRSLRQVIASDVDPAPLELAAKNLALLSPAGLTARELERREQSERFGKPSYLEAAQ 129 (250)
T ss_dssp CSCEEEEETTCTTSHHHHHHHHHTGGGEEEEEEEESCHHHHHHHHHHHHTTSHHHHHHHHHHHHHHHHHHCCHHHHHHHH
T ss_pred CCCCeEEECCCCCCHHHHHHHHHhccCCCeEEEEECCHHHHHHHHHHHHHhhhccccccchhhhhhhhhcccccchhhhh
Confidence 356899999999999999999872 134689999999966655554433220 1
Q ss_pred ----eE-------------EEEccCCCCcccc-c-CCCcEeEEEEeCCC------------hhHHHHHHHHHhccCCCCc
Q 021911 194 ----VI-------------PIIEDARHPAKYR-M-LVGMVDVIFSDVAQ------------PDQARILALNASYFLKAGG 242 (305)
Q Consensus 194 ----I~-------------~~~~D~~~~~~~~-~-~~~~fD~V~~d~~~------------~~~~~~l~~~a~~~LkpGG 242 (305)
|. +++.|+.+..... . ...+||+|++++|. .....++. ++.++|||||
T Consensus 130 ~~~~v~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~fD~Iv~npp~~~~~~~~~~~~~~~~~~~l~-~~~~~LkpgG 208 (250)
T 1o9g_A 130 AARRLRERLTAEGGALPCAIRTADVFDPRALSAVLAGSAPDVVLTDLPYGERTHWEGQVPGQPVAGLLR-SLASALPAHA 208 (250)
T ss_dssp HHHHHHHHHHHTTSSCCEEEEECCTTCGGGHHHHHTTCCCSEEEEECCGGGSSSSSSCCCHHHHHHHHH-HHHHHSCTTC
T ss_pred hhhhhhhhccccccccccceeecccccccccccccCCCCceEEEeCCCeeccccccccccccHHHHHHH-HHHHhcCCCc
Confidence 66 9999987753210 0 13489999999872 12335555 8999999999
Q ss_pred EEEEEE
Q 021911 243 HFVISI 248 (305)
Q Consensus 243 ~lv~s~ 248 (305)
+|+++.
T Consensus 209 ~l~~~~ 214 (250)
T 1o9g_A 209 VIAVTD 214 (250)
T ss_dssp EEEEEE
T ss_pred EEEEeC
Confidence 999954
|
| >3htx_A HEN1; HEN1, small RNA methyltransferase, protein-RNA complex; HET: SAH; 3.10A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=99.23 E-value=3.4e-10 Score=114.06 Aligned_cols=105 Identities=10% Similarity=0.037 Sum_probs=79.5
Q ss_pred CCCCCEEEEEecCCCccHHHHHhhhCCCcEEEEEeCChHHHHHHHHHHHc--------CCCeEEEEccCCCCcccccCCC
Q 021911 141 IKPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKK--------RTNVIPIIEDARHPAKYRMLVG 212 (305)
Q Consensus 141 ~~~g~~VLDlG~G~G~~t~~la~~~~~~~~V~avD~s~~~~~~l~~~a~~--------~~nI~~~~~D~~~~~~~~~~~~ 212 (305)
..++.+|||||||+|.++..|++...+..+|++||+|+.+++.+.+.++. .++|.+++.|+.+.+. ...
T Consensus 719 ~~~g~rVLDVGCGTG~lai~LAr~g~p~a~VtGVDIS~emLe~AReRLa~~lnAkr~gl~nVefiqGDa~dLp~---~d~ 795 (950)
T 3htx_A 719 ESSASTLVDFGCGSGSLLDSLLDYPTSLQTIIGVDISPKGLARAAKMLHVKLNKEACNVKSATLYDGSILEFDS---RLH 795 (950)
T ss_dssp HSCCSEEEEETCSSSHHHHHHTSSCCCCCEEEEEESCHHHHHHHHHHHHHHTTTTCSSCSEEEEEESCTTSCCT---TSC
T ss_pred ccCCCEEEEECCCCCHHHHHHHHhCCCCCeEEEEECCHHHHHHHHHHhhhccchhhcCCCceEEEECchHhCCc---ccC
Confidence 45789999999999999999998854456999999999655554442221 1579999999988653 257
Q ss_pred cEeEEEEeCCC---h--hHHHHHHHHHhccCCCCcEEEEEEcc
Q 021911 213 MVDVIFSDVAQ---P--DQARILALNASYFLKAGGHFVISIKA 250 (305)
Q Consensus 213 ~fD~V~~d~~~---~--~~~~~l~~~a~~~LkpGG~lv~s~~~ 250 (305)
.||+|++.... + ....++. ++.++|||| .|+++++.
T Consensus 796 sFDlVV~~eVLeHL~dp~l~~~L~-eI~RvLKPG-~LIISTPN 836 (950)
T 3htx_A 796 DVDIGTCLEVIEHMEEDQACEFGE-KVLSLFHPK-LLIVSTPN 836 (950)
T ss_dssp SCCEEEEESCGGGSCHHHHHHHHH-HHHHTTCCS-EEEEEECB
T ss_pred CeeEEEEeCchhhCChHHHHHHHH-HHHHHcCCC-EEEEEecC
Confidence 99999996651 2 2234555 999999999 88888853
|
| >1u2z_A Histone-lysine N-methyltransferase, H3 lysine-79 specific; histone methyltransferase, nucleosome; HET: SAH; 2.20A {Saccharomyces cerevisiae} SCOP: c.66.1.31 | Back alignment and structure |
|---|
Probab=99.23 E-value=5.7e-11 Score=113.12 Aligned_cols=117 Identities=16% Similarity=0.153 Sum_probs=82.8
Q ss_pred HHHHHHHccccccCCCCCCEEEEEecCCCccHHHHHhhhCCCcEEEEEeCChHHHHHH-------HHHHHc----CCCeE
Q 021911 127 KLAAAVLGGVDNIWIKPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDL-------VNMAKK----RTNVI 195 (305)
Q Consensus 127 ~l~a~ll~~l~~~~~~~g~~VLDlG~G~G~~t~~la~~~~~~~~V~avD~s~~~~~~l-------~~~a~~----~~nI~ 195 (305)
.+++.++.. +.+.++.+|||||||+|..+..+|..++ ..+|++||+|+..+..+ .+.++. ..||+
T Consensus 229 ~~v~~ml~~---l~l~~g~~VLDLGCGsG~la~~LA~~~g-~~~V~GVDis~~~l~~A~~Ml~~ar~~~~~~Gl~~~nV~ 304 (433)
T 1u2z_A 229 NFLSDVYQQ---CQLKKGDTFMDLGSGVGNCVVQAALECG-CALSFGCEIMDDASDLTILQYEELKKRCKLYGMRLNNVE 304 (433)
T ss_dssp HHHHHHHHH---TTCCTTCEEEEESCTTSHHHHHHHHHHC-CSEEEEEECCHHHHHHHHHHHHHHHHHHHHTTBCCCCEE
T ss_pred HHHHHHHHh---cCCCCCCEEEEeCCCcCHHHHHHHHHCC-CCEEEEEeCCHHHHHHHHHhHHHHHHHHHHcCCCCCceE
Confidence 344445433 3577899999999999999999999864 45899999999665443 222222 15899
Q ss_pred EEEccCCC-CcccccCCCcEeEEEEeCC--ChhHHHHHHHHHhccCCCCcEEEEEE
Q 021911 196 PIIEDARH-PAKYRMLVGMVDVIFSDVA--QPDQARILALNASYFLKAGGHFVISI 248 (305)
Q Consensus 196 ~~~~D~~~-~~~~~~~~~~fD~V~~d~~--~~~~~~~l~~~a~~~LkpGG~lv~s~ 248 (305)
++++|... .........+||+|+++.. .++....|. ++.+.|||||.|++..
T Consensus 305 ~i~gD~~~~~~~~~~~~~~FDvIvvn~~l~~~d~~~~L~-el~r~LKpGG~lVi~d 359 (433)
T 1u2z_A 305 FSLKKSFVDNNRVAELIPQCDVILVNNFLFDEDLNKKVE-KILQTAKVGCKIISLK 359 (433)
T ss_dssp EEESSCSTTCHHHHHHGGGCSEEEECCTTCCHHHHHHHH-HHHTTCCTTCEEEESS
T ss_pred EEEcCccccccccccccCCCCEEEEeCccccccHHHHHH-HHHHhCCCCeEEEEee
Confidence 99886543 2111111368999999643 366666776 9999999999999874
|
| >2y1w_A Histone-arginine methyltransferase CARM1; histone modification; HET: SFG 849; 2.10A {Homo sapiens} PDB: 2y1x_A* 3b3f_A* 3b3g_A 2v74_B* 2v7e_A | Back alignment and structure |
|---|
Probab=99.23 E-value=5.7e-11 Score=110.26 Aligned_cols=101 Identities=22% Similarity=0.230 Sum_probs=79.4
Q ss_pred CCCCCCEEEEEecCCCccHHHHHhhhCCCcEEEEEeCChHHHHHHHHHHHcC---CCeEEEEccCCCCcccccCCCcEeE
Q 021911 140 WIKPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKR---TNVIPIIEDARHPAKYRMLVGMVDV 216 (305)
Q Consensus 140 ~~~~g~~VLDlG~G~G~~t~~la~~~~~~~~V~avD~s~~~~~~l~~~a~~~---~nI~~~~~D~~~~~~~~~~~~~fD~ 216 (305)
...++.+|||+|||+|.++..+++. +..+|++||+|+ .+..+.+.++.. ++|++++.|+.+.+ +..+||+
T Consensus 47 ~~~~~~~VLDiGcGtG~ls~~la~~--g~~~V~~vD~s~-~~~~a~~~~~~~~l~~~v~~~~~d~~~~~----~~~~~D~ 119 (348)
T 2y1w_A 47 TDFKDKIVLDVGCGSGILSFFAAQA--GARKIYAVEAST-MAQHAEVLVKSNNLTDRIVVIPGKVEEVS----LPEQVDI 119 (348)
T ss_dssp GGTTTCEEEEETCTTSHHHHHHHHT--TCSEEEEEECST-HHHHHHHHHHHTTCTTTEEEEESCTTTCC----CSSCEEE
T ss_pred ccCCcCEEEEcCCCccHHHHHHHhC--CCCEEEEECCHH-HHHHHHHHHHHcCCCCcEEEEEcchhhCC----CCCceeE
Confidence 4567899999999999999999986 456999999996 555555555443 57999999998764 2368999
Q ss_pred EEEeCC-----ChhHHHHHHHHHhccCCCCcEEEEEE
Q 021911 217 IFSDVA-----QPDQARILALNASYFLKAGGHFVISI 248 (305)
Q Consensus 217 V~~d~~-----~~~~~~~l~~~a~~~LkpGG~lv~s~ 248 (305)
|+++.+ .+.....+. ++.++|||||.|++++
T Consensus 120 Ivs~~~~~~~~~~~~~~~l~-~~~~~LkpgG~li~~~ 155 (348)
T 2y1w_A 120 IISEPMGYMLFNERMLESYL-HAKKYLKPSGNMFPTI 155 (348)
T ss_dssp EEECCCBTTBTTTSHHHHHH-HGGGGEEEEEEEESCE
T ss_pred EEEeCchhcCChHHHHHHHH-HHHhhcCCCeEEEEec
Confidence 999865 244566776 8899999999998654
|
| >1fp1_D Isoliquiritigenin 2'-O-methyltransferase; protein-substrate, protein-product complex; HET: SAH HCC; 1.82A {Medicago sativa} SCOP: a.4.5.29 c.66.1.12 PDB: 1fpq_A* | Back alignment and structure |
|---|
Probab=99.23 E-value=1.7e-10 Score=107.83 Aligned_cols=95 Identities=14% Similarity=0.145 Sum_probs=77.4
Q ss_pred CCCCCEEEEEecCCCccHHHHHhhhCCCcEEEEEeCChHHHHHHHHHHHcCCCeEEEEccCCCCcccccCCCcEeEEEEe
Q 021911 141 IKPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKRTNVIPIIEDARHPAKYRMLVGMVDVIFSD 220 (305)
Q Consensus 141 ~~~g~~VLDlG~G~G~~t~~la~~~~~~~~V~avD~s~~~~~~l~~~a~~~~nI~~~~~D~~~~~~~~~~~~~fD~V~~d 220 (305)
+.+..+|||+|||+|.++..+++.. +..+++++|+ + .+++.+++.++|++++.|+.++ . +. ||+|++.
T Consensus 207 ~~~~~~vLDvG~G~G~~~~~l~~~~-~~~~~~~~D~-~----~~~~~a~~~~~v~~~~~d~~~~--~---~~-~D~v~~~ 274 (372)
T 1fp1_D 207 FEGISTLVDVGGGSGRNLELIISKY-PLIKGINFDL-P----QVIENAPPLSGIEHVGGDMFAS--V---PQ-GDAMILK 274 (372)
T ss_dssp TTTCSEEEEETCTTSHHHHHHHHHC-TTCEEEEEEC-H----HHHTTCCCCTTEEEEECCTTTC--C---CC-EEEEEEE
T ss_pred cCCCCEEEEeCCCCcHHHHHHHHHC-CCCeEEEeCh-H----HHHHhhhhcCCCEEEeCCcccC--C---CC-CCEEEEe
Confidence 4567899999999999999999986 5678999999 7 6666676667899999999763 1 23 9999986
Q ss_pred CC---ChhHH--HHHHHHHhccCCCCcEEEEEE
Q 021911 221 VA---QPDQA--RILALNASYFLKAGGHFVISI 248 (305)
Q Consensus 221 ~~---~~~~~--~~l~~~a~~~LkpGG~lv~s~ 248 (305)
.. .++.. .+|. +++++|||||+|++..
T Consensus 275 ~~lh~~~d~~~~~~l~-~~~~~L~pgG~l~i~e 306 (372)
T 1fp1_D 275 AVCHNWSDEKCIEFLS-NCHKALSPNGKVIIVE 306 (372)
T ss_dssp SSGGGSCHHHHHHHHH-HHHHHEEEEEEEEEEE
T ss_pred cccccCCHHHHHHHHH-HHHHhcCCCCEEEEEE
Confidence 65 23333 6776 9999999999999985
|
| >1jg1_A PIMT;, protein-L-isoaspartate O-methyltransferase; rossmann methyltransferase, protein repair isomerization; HET: SAH; 1.20A {Pyrococcus furiosus} SCOP: c.66.1.7 PDB: 1jg2_A* 1jg3_A* 1jg4_A* | Back alignment and structure |
|---|
Probab=99.23 E-value=3.9e-11 Score=104.81 Aligned_cols=111 Identities=25% Similarity=0.289 Sum_probs=81.0
Q ss_pred HHHHHHHccccccCCCCCCEEEEEecCCCccHHHHHhhhCCCcEEEEEeCChHHHHHHHHHHHcC--CCeEEEEccCCCC
Q 021911 127 KLAAAVLGGVDNIWIKPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKR--TNVIPIIEDARHP 204 (305)
Q Consensus 127 ~l~a~ll~~l~~~~~~~g~~VLDlG~G~G~~t~~la~~~~~~~~V~avD~s~~~~~~l~~~a~~~--~nI~~~~~D~~~~ 204 (305)
.+.+.++..+ .+.++.+|||+|||+|.++..+++..+ .+|+++|+|+..++.+.+..+.. .++.+++.|+...
T Consensus 78 ~~~~~~~~~l---~~~~~~~vLdiG~G~G~~~~~la~~~~--~~v~~vD~~~~~~~~a~~~~~~~~~~~v~~~~~d~~~~ 152 (235)
T 1jg1_A 78 HMVAIMLEIA---NLKPGMNILEVGTGSGWNAALISEIVK--TDVYTIERIPELVEFAKRNLERAGVKNVHVILGDGSKG 152 (235)
T ss_dssp HHHHHHHHHH---TCCTTCCEEEECCTTSHHHHHHHHHHC--SCEEEEESCHHHHHHHHHHHHHTTCCSEEEEESCGGGC
T ss_pred HHHHHHHHhc---CCCCCCEEEEEeCCcCHHHHHHHHHhC--CEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEECCcccC
Confidence 3444444333 577889999999999999999999874 68999999996666555555443 5799999997322
Q ss_pred cccccCCCcEeEEEEeCCChhHHHHHHHHHhccCCCCcEEEEEEc
Q 021911 205 AKYRMLVGMVDVIFSDVAQPDQARILALNASYFLKAGGHFVISIK 249 (305)
Q Consensus 205 ~~~~~~~~~fD~V~~d~~~~~~~~~l~~~a~~~LkpGG~lv~s~~ 249 (305)
.+. ...||+|+++.+.+... . ++.+.|||||+|++++.
T Consensus 153 ~~~---~~~fD~Ii~~~~~~~~~---~-~~~~~L~pgG~lvi~~~ 190 (235)
T 1jg1_A 153 FPP---KAPYDVIIVTAGAPKIP---E-PLIEQLKIGGKLIIPVG 190 (235)
T ss_dssp CGG---GCCEEEEEECSBBSSCC---H-HHHHTEEEEEEEEEEEC
T ss_pred CCC---CCCccEEEECCcHHHHH---H-HHHHhcCCCcEEEEEEe
Confidence 211 24699999987744322 1 55689999999999983
|
| >3q7e_A Protein arginine N-methyltransferase 1; HET: SAH; 2.20A {Rattus norvegicus} PDB: 1orh_A* 1ori_A* 1or8_A* | Back alignment and structure |
|---|
Probab=99.22 E-value=4e-11 Score=111.39 Aligned_cols=102 Identities=19% Similarity=0.163 Sum_probs=80.4
Q ss_pred CCCCCCEEEEEecCCCccHHHHHhhhCCCcEEEEEeCChHHHHHHHHHHHcC---CCeEEEEccCCCCcccccCCCcEeE
Q 021911 140 WIKPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKR---TNVIPIIEDARHPAKYRMLVGMVDV 216 (305)
Q Consensus 140 ~~~~g~~VLDlG~G~G~~t~~la~~~~~~~~V~avD~s~~~~~~l~~~a~~~---~nI~~~~~D~~~~~~~~~~~~~fD~ 216 (305)
.+.++.+|||+|||+|.++..+++. +..+|++||+|+ ++..+.+.++.. .+|.+++.|+.+.+. ...+||+
T Consensus 63 ~~~~~~~VLDvGcG~G~~~~~la~~--g~~~v~gvD~s~-~l~~a~~~~~~~~~~~~v~~~~~d~~~~~~---~~~~fD~ 136 (349)
T 3q7e_A 63 HLFKDKVVLDVGSGTGILCMFAAKA--GARKVIGIECSS-ISDYAVKIVKANKLDHVVTIIKGKVEEVEL---PVEKVDI 136 (349)
T ss_dssp HHHTTCEEEEESCTTSHHHHHHHHT--TCSEEEEEECST-HHHHHHHHHHHTTCTTTEEEEESCTTTCCC---SSSCEEE
T ss_pred ccCCCCEEEEEeccchHHHHHHHHC--CCCEEEEECcHH-HHHHHHHHHHHcCCCCcEEEEECcHHHccC---CCCceEE
Confidence 3567899999999999999999987 456999999995 766666666554 359999999988742 2479999
Q ss_pred EEEeCC------ChhHHHHHHHHHhccCCCCcEEEEEE
Q 021911 217 IFSDVA------QPDQARILALNASYFLKAGGHFVISI 248 (305)
Q Consensus 217 V~~d~~------~~~~~~~l~~~a~~~LkpGG~lv~s~ 248 (305)
|+++.. ..+...++. ++.++|||||.|+...
T Consensus 137 Iis~~~~~~l~~~~~~~~~l~-~~~r~LkpgG~li~~~ 173 (349)
T 3q7e_A 137 IISEWMGYCLFYESMLNTVLH-ARDKWLAPDGLIFPDR 173 (349)
T ss_dssp EEECCCBBTBTBTCCHHHHHH-HHHHHEEEEEEEESCE
T ss_pred EEEccccccccCchhHHHHHH-HHHHhCCCCCEEcccc
Confidence 999764 245556665 8889999999997543
|
| >2aot_A HMT, histamine N-methyltransferase; classic methyltransferase fold, protein-drug complex; HET: CSO 2PM SAH; 1.90A {Homo sapiens} SCOP: c.66.1.19 PDB: 1jqd_A* 2aou_A* 2aov_A* 2aox_A* 1jqe_A* 2aow_A* | Back alignment and structure |
|---|
Probab=99.22 E-value=3.6e-11 Score=108.53 Aligned_cols=107 Identities=18% Similarity=0.120 Sum_probs=73.0
Q ss_pred CCCCCEEEEEecCCCccHHHHHhhh---CCCcEE--EEEeCChHHHHHHHHHHHcC---CCeEEE--EccCCCCcc---c
Q 021911 141 IKPGARVLYLGAASGTTVSHVSDIV---GPNGVV--YAVEFSHRSGRDLVNMAKKR---TNVIPI--IEDARHPAK---Y 207 (305)
Q Consensus 141 ~~~g~~VLDlG~G~G~~t~~la~~~---~~~~~V--~avD~s~~~~~~l~~~a~~~---~nI~~~--~~D~~~~~~---~ 207 (305)
+.++.+|||||||+|.++..++..+ .+...| +++|+|+.+++.+.+.++.. +++.+. ..|+..... .
T Consensus 50 ~~~~~~VLDiG~GtG~~~~~~l~~l~~~~~~~~v~~~~vD~S~~ml~~a~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~ 129 (292)
T 2aot_A 50 TKSEIKILSIGGGAGEIDLQILSKVQAQYPGVCINNEVVEPSAEQIAKYKELVAKTSNLENVKFAWHKETSSEYQSRMLE 129 (292)
T ss_dssp TCSEEEEEEETCTTSHHHHHHHHHHHHHSTTCEEEEEEECSCHHHHHHHHHHHHTCSSCTTEEEEEECSCHHHHHHHHHT
T ss_pred CCCCCeEEEEcCCCCHHHHHHHHHHHhhCCCceeeEEEEeCCHHHHHHHHHHHHhccCCCcceEEEEecchhhhhhhhcc
Confidence 3567899999999998776554332 144544 99999996655555554432 356554 334332210 0
Q ss_pred ccCCCcEeEEEEeCC---ChhHHHHHHHHHhccCCCCcEEEEEE
Q 021911 208 RMLVGMVDVIFSDVA---QPDQARILALNASYFLKAGGHFVISI 248 (305)
Q Consensus 208 ~~~~~~fD~V~~d~~---~~~~~~~l~~~a~~~LkpGG~lv~s~ 248 (305)
....++||+|++... .++....|. +++++|||||+|++++
T Consensus 130 ~~~~~~fD~V~~~~~l~~~~d~~~~l~-~~~r~LkpgG~l~i~~ 172 (292)
T 2aot_A 130 KKELQKWDFIHMIQMLYYVKDIPATLK-FFHSLLGTNAKMLIIV 172 (292)
T ss_dssp TTCCCCEEEEEEESCGGGCSCHHHHHH-HHHHTEEEEEEEEEEE
T ss_pred ccCCCceeEEEEeeeeeecCCHHHHHH-HHHHHcCCCcEEEEEE
Confidence 012578999999766 567788887 9999999999999986
|
| >2qm3_A Predicted methyltransferase; putative methyltransferase, structural genomics, pyrococcus PSI-2, protein structure initiative; HET: MSE; 2.05A {Pyrococcus furiosus dsm 3638} | Back alignment and structure |
|---|
Probab=99.20 E-value=4.2e-10 Score=105.33 Aligned_cols=103 Identities=14% Similarity=0.103 Sum_probs=77.7
Q ss_pred CCCCEEEEEecCCCccHHHHHhhhCCCcEEEEEeCChHHHHHHHHHHHcC--CCeEEEEccCCCCcccccCCCcEeEEEE
Q 021911 142 KPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKR--TNVIPIIEDARHPAKYRMLVGMVDVIFS 219 (305)
Q Consensus 142 ~~g~~VLDlG~G~G~~t~~la~~~~~~~~V~avD~s~~~~~~l~~~a~~~--~nI~~~~~D~~~~~~~~~~~~~fD~V~~ 219 (305)
.++.+|||+| |+|.++..++.. ++..+|++||+|+.+++.+.++++.. .+|++++.|+.+..+. ....+||+|++
T Consensus 171 ~~~~~VLDlG-G~G~~~~~la~~-~~~~~v~~vDi~~~~l~~a~~~~~~~g~~~v~~~~~D~~~~l~~-~~~~~fD~Vi~ 247 (373)
T 2qm3_A 171 LENKDIFVLG-DDDLTSIALMLS-GLPKRIAVLDIDERLTKFIEKAANEIGYEDIEIFTFDLRKPLPD-YALHKFDTFIT 247 (373)
T ss_dssp STTCEEEEES-CTTCHHHHHHHH-TCCSEEEEECSCHHHHHHHHHHHHHHTCCCEEEECCCTTSCCCT-TTSSCBSEEEE
T ss_pred CCCCEEEEEC-CCCHHHHHHHHh-CCCCEEEEEECCHHHHHHHHHHHHHcCCCCEEEEEChhhhhchh-hccCCccEEEE
Confidence 4678999999 999999999876 35579999999997766666555543 3899999999873211 12358999999
Q ss_pred eCCCh--hHHHHHHHHHhccCCCCcE-EEEEE
Q 021911 220 DVAQP--DQARILALNASYFLKAGGH-FVISI 248 (305)
Q Consensus 220 d~~~~--~~~~~l~~~a~~~LkpGG~-lv~s~ 248 (305)
|+|.. ....++. ++.++|||||+ +++++
T Consensus 248 ~~p~~~~~~~~~l~-~~~~~LkpgG~~~~~~~ 278 (373)
T 2qm3_A 248 DPPETLEAIRAFVG-RGIATLKGPRCAGYFGI 278 (373)
T ss_dssp CCCSSHHHHHHHHH-HHHHTBCSTTCEEEEEE
T ss_pred CCCCchHHHHHHHH-HHHHHcccCCeEEEEEE
Confidence 99853 2344555 89999999995 46665
|
| >2fyt_A Protein arginine N-methyltransferase 3; structural genomics, structural genomics consortium, SGC; HET: SAH; 2.00A {Homo sapiens} SCOP: c.66.1.6 PDB: 3smq_A* 1f3l_A* | Back alignment and structure |
|---|
Probab=99.20 E-value=1e-10 Score=108.25 Aligned_cols=100 Identities=19% Similarity=0.173 Sum_probs=78.1
Q ss_pred CCCCCCEEEEEecCCCccHHHHHhhhCCCcEEEEEeCChHHHHHHHHHHHcC---CCeEEEEccCCCCcccccCCCcEeE
Q 021911 140 WIKPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKR---TNVIPIIEDARHPAKYRMLVGMVDV 216 (305)
Q Consensus 140 ~~~~g~~VLDlG~G~G~~t~~la~~~~~~~~V~avD~s~~~~~~l~~~a~~~---~nI~~~~~D~~~~~~~~~~~~~fD~ 216 (305)
.+.++.+|||+|||+|.++..+++. +..+|++||+|+ ++..+.+.++.. ++|.+++.|+.+.+. ..++||+
T Consensus 61 ~~~~~~~VLDiGcGtG~ls~~la~~--g~~~v~gvD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~---~~~~~D~ 134 (340)
T 2fyt_A 61 HIFKDKVVLDVGCGTGILSMFAAKA--GAKKVLGVDQSE-ILYQAMDIIRLNKLEDTITLIKGKIEEVHL---PVEKVDV 134 (340)
T ss_dssp GGTTTCEEEEETCTTSHHHHHHHHT--TCSEEEEEESST-HHHHHHHHHHHTTCTTTEEEEESCTTTSCC---SCSCEEE
T ss_pred hhcCCCEEEEeeccCcHHHHHHHHc--CCCEEEEEChHH-HHHHHHHHHHHcCCCCcEEEEEeeHHHhcC---CCCcEEE
Confidence 4567899999999999999999987 345899999996 666666655544 689999999987632 2468999
Q ss_pred EEEeCC------ChhHHHHHHHHHhccCCCCcEEEE
Q 021911 217 IFSDVA------QPDQARILALNASYFLKAGGHFVI 246 (305)
Q Consensus 217 V~~d~~------~~~~~~~l~~~a~~~LkpGG~lv~ 246 (305)
|+++.. ..+...++. ++.++|||||.|+.
T Consensus 135 Ivs~~~~~~l~~~~~~~~~l~-~~~~~LkpgG~lip 169 (340)
T 2fyt_A 135 IISEWMGYFLLFESMLDSVLY-AKNKYLAKGGSVYP 169 (340)
T ss_dssp EEECCCBTTBTTTCHHHHHHH-HHHHHEEEEEEEES
T ss_pred EEEcCchhhccCHHHHHHHHH-HHHhhcCCCcEEEc
Confidence 999762 233445665 88999999999983
|
| >3r0q_C Probable protein arginine N-methyltransferase 4.2; arginine methyltransferase, methylation; HET: SAH; 2.61A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=99.20 E-value=3.8e-11 Score=112.62 Aligned_cols=101 Identities=23% Similarity=0.197 Sum_probs=80.0
Q ss_pred CCCCCCEEEEEecCCCccHHHHHhhhCCCcEEEEEeCChHHHHHHHHHHHcC---CCeEEEEccCCCCcccccCCCcEeE
Q 021911 140 WIKPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKR---TNVIPIIEDARHPAKYRMLVGMVDV 216 (305)
Q Consensus 140 ~~~~g~~VLDlG~G~G~~t~~la~~~~~~~~V~avD~s~~~~~~l~~~a~~~---~nI~~~~~D~~~~~~~~~~~~~fD~ 216 (305)
.+.++.+|||||||+|.++..+++. ...+|++||+| .++..+.+.++.. .+|++++.|+.+... ..+||+
T Consensus 60 ~~~~~~~VLDlGcGtG~ls~~la~~--g~~~V~gvD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~----~~~~D~ 132 (376)
T 3r0q_C 60 HHFEGKTVLDVGTGSGILAIWSAQA--GARKVYAVEAT-KMADHARALVKANNLDHIVEVIEGSVEDISL----PEKVDV 132 (376)
T ss_dssp TTTTTCEEEEESCTTTHHHHHHHHT--TCSEEEEEESS-TTHHHHHHHHHHTTCTTTEEEEESCGGGCCC----SSCEEE
T ss_pred ccCCCCEEEEeccCcCHHHHHHHhc--CCCEEEEEccH-HHHHHHHHHHHHcCCCCeEEEEECchhhcCc----CCcceE
Confidence 4677899999999999999999987 34599999999 7777776666554 459999999977642 378999
Q ss_pred EEEeCC------ChhHHHHHHHHHhccCCCCcEEEEEE
Q 021911 217 IFSDVA------QPDQARILALNASYFLKAGGHFVISI 248 (305)
Q Consensus 217 V~~d~~------~~~~~~~l~~~a~~~LkpGG~lv~s~ 248 (305)
|+++.. ..+...++. ++.++|||||.|+++.
T Consensus 133 Iv~~~~~~~l~~e~~~~~~l~-~~~~~LkpgG~li~~~ 169 (376)
T 3r0q_C 133 IISEWMGYFLLRESMFDSVIS-ARDRWLKPTGVMYPSH 169 (376)
T ss_dssp EEECCCBTTBTTTCTHHHHHH-HHHHHEEEEEEEESSE
T ss_pred EEEcChhhcccchHHHHHHHH-HHHhhCCCCeEEEEec
Confidence 999764 133455565 8889999999998865
|
| >2f8l_A Hypothetical protein LMO1582; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE SAM; 2.20A {Listeria monocytogenes} SCOP: c.66.1.45 | Back alignment and structure |
|---|
Probab=99.19 E-value=2.2e-10 Score=106.05 Aligned_cols=105 Identities=16% Similarity=0.177 Sum_probs=78.0
Q ss_pred CCCCCEEEEEecCCCccHHHHHhhhCCC----cEEEEEeCChHHHHHHHHHHHcC-CCeEEEEccCCCCcccccCCCcEe
Q 021911 141 IKPGARVLYLGAASGTTVSHVSDIVGPN----GVVYAVEFSHRSGRDLVNMAKKR-TNVIPIIEDARHPAKYRMLVGMVD 215 (305)
Q Consensus 141 ~~~g~~VLDlG~G~G~~t~~la~~~~~~----~~V~avD~s~~~~~~l~~~a~~~-~nI~~~~~D~~~~~~~~~~~~~fD 215 (305)
+.++.+|||+|||+|.++..+++.+... .+|+++|+++.+++.+...+... .++.+++.|+.... ....||
T Consensus 128 ~~~~~~VlDp~cGsG~~l~~~~~~~~~~~~~~~~v~GiDi~~~~~~~a~~n~~~~g~~~~i~~~D~l~~~----~~~~fD 203 (344)
T 2f8l_A 128 KKKNVSILDPACGTANLLTTVINQLELKGDVDVHASGVDVDDLLISLALVGADLQRQKMTLLHQDGLANL----LVDPVD 203 (344)
T ss_dssp TCSEEEEEETTCTTSHHHHHHHHHHHTTSSCEEEEEEEESCHHHHHHHHHHHHHHTCCCEEEESCTTSCC----CCCCEE
T ss_pred CCCCCEEEeCCCCccHHHHHHHHHHHHhcCCCceEEEEECCHHHHHHHHHHHHhCCCCceEEECCCCCcc----ccCCcc
Confidence 4467899999999999999999887432 68999999995554444333221 36889999986643 246899
Q ss_pred EEEEeCCC---h--h----------------HHHHHHHHHhccCCCCcEEEEEEcc
Q 021911 216 VIFSDVAQ---P--D----------------QARILALNASYFLKAGGHFVISIKA 250 (305)
Q Consensus 216 ~V~~d~~~---~--~----------------~~~~l~~~a~~~LkpGG~lv~s~~~ 250 (305)
+|++|+|. + + +...+. ++.++|||+|++++.++.
T Consensus 204 ~Ii~NPPfg~~~~~~~~~~~~~~~~~g~~~~~~~~l~-~~~~~Lk~gG~~~~v~p~ 258 (344)
T 2f8l_A 204 VVISDLPVGYYPDDENAKTFELCREEGHSFAHFLFIE-QGMRYTKPGGYLFFLVPD 258 (344)
T ss_dssp EEEEECCCSEESCHHHHTTSTTCCSSSCEEHHHHHHH-HHHHTEEEEEEEEEEEEG
T ss_pred EEEECCCCCCcCchhhhhhccccCCCCcchHHHHHHH-HHHHHhCCCCEEEEEECc
Confidence 99999992 1 1 123454 899999999999999854
|
| >3b3j_A Histone-arginine methyltransferase CARM1; protein arginine methyltransferase 4, APO catalytic domain, regulator, mRNA processing; 2.55A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=99.19 E-value=7.7e-11 Score=113.99 Aligned_cols=101 Identities=22% Similarity=0.230 Sum_probs=79.7
Q ss_pred CCCCCCEEEEEecCCCccHHHHHhhhCCCcEEEEEeCChHHHHHHHHHHHcC---CCeEEEEccCCCCcccccCCCcEeE
Q 021911 140 WIKPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKR---TNVIPIIEDARHPAKYRMLVGMVDV 216 (305)
Q Consensus 140 ~~~~g~~VLDlG~G~G~~t~~la~~~~~~~~V~avD~s~~~~~~l~~~a~~~---~nI~~~~~D~~~~~~~~~~~~~fD~ 216 (305)
...++.+|||+|||+|.++..+++. +..+|++||+|+ ++..+.+.++.. ++|++++.|+.+.. +..+||+
T Consensus 155 ~~~~~~~VLDiGcGtG~la~~la~~--~~~~V~gvD~s~-~l~~A~~~~~~~gl~~~v~~~~~d~~~~~----~~~~fD~ 227 (480)
T 3b3j_A 155 TDFKDKIVLDVGCGSGILSFFAAQA--GARKIYAVEAST-MAQHAEVLVKSNNLTDRIVVIPGKVEEVS----LPEQVDI 227 (480)
T ss_dssp GGTTTCEEEEESCSTTHHHHHHHHT--TCSEEEEEECHH-HHHHHHHHHHHTTCTTTEEEEESCTTTCC----CSSCEEE
T ss_pred hhcCCCEEEEecCcccHHHHHHHHc--CCCEEEEEEcHH-HHHHHHHHHHHcCCCCcEEEEECchhhCc----cCCCeEE
Confidence 3457789999999999999999885 456999999998 665555555544 57999999998753 2368999
Q ss_pred EEEeCC-----ChhHHHHHHHHHhccCCCCcEEEEEE
Q 021911 217 IFSDVA-----QPDQARILALNASYFLKAGGHFVISI 248 (305)
Q Consensus 217 V~~d~~-----~~~~~~~l~~~a~~~LkpGG~lv~s~ 248 (305)
|+++.+ .++....+. ++.++|||||.|++..
T Consensus 228 Ivs~~~~~~~~~e~~~~~l~-~~~~~LkpgG~li~~~ 263 (480)
T 3b3j_A 228 IISEPMGYMLFNERMLESYL-HAKKYLKPSGNMFPTI 263 (480)
T ss_dssp EECCCCHHHHTCHHHHHHHH-HGGGGEEEEEEEESCE
T ss_pred EEEeCchHhcCcHHHHHHHH-HHHHhcCCCCEEEEEe
Confidence 999877 244566676 8899999999998644
|
| >2pjd_A Ribosomal RNA small subunit methyltransferase C; gene duplication, RNA modification, SAM binding; 2.10A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.18 E-value=3.6e-11 Score=111.30 Aligned_cols=101 Identities=15% Similarity=0.141 Sum_probs=79.3
Q ss_pred CCCCCEEEEEecCCCccHHHHHhhhCCCcEEEEEeCChHHHHHHHHHHHcC-CCeEEEEccCCCCcccccCCCcEeEEEE
Q 021911 141 IKPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKR-TNVIPIIEDARHPAKYRMLVGMVDVIFS 219 (305)
Q Consensus 141 ~~~g~~VLDlG~G~G~~t~~la~~~~~~~~V~avD~s~~~~~~l~~~a~~~-~nI~~~~~D~~~~~~~~~~~~~fD~V~~ 219 (305)
..++.+|||+|||+|.++..+++.. +..+|+++|+|+.+++.+.+.+... .++.++..|+.... ..+||+|++
T Consensus 194 ~~~~~~VLDlGcG~G~~~~~la~~~-~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~~~~~d~~~~~-----~~~fD~Iv~ 267 (343)
T 2pjd_A 194 PHTKGKVLDVGCGAGVLSVAFARHS-PKIRLTLCDVSAPAVEASRATLAANGVEGEVFASNVFSEV-----KGRFDMIIS 267 (343)
T ss_dssp TTCCSBCCBTTCTTSHHHHHHHHHC-TTCBCEEEESBHHHHHHHHHHHHHTTCCCEEEECSTTTTC-----CSCEEEEEE
T ss_pred cCCCCeEEEecCccCHHHHHHHHHC-CCCEEEEEECCHHHHHHHHHHHHHhCCCCEEEEccccccc-----cCCeeEEEE
Confidence 4567799999999999999999884 5669999999996666665555443 34677888886542 468999999
Q ss_pred eCCCh--------hHHHHHHHHHhccCCCCcEEEEEE
Q 021911 220 DVAQP--------DQARILALNASYFLKAGGHFVISI 248 (305)
Q Consensus 220 d~~~~--------~~~~~l~~~a~~~LkpGG~lv~s~ 248 (305)
+++.. +...++. ++.++|||||.|++.+
T Consensus 268 ~~~~~~g~~~~~~~~~~~l~-~~~~~LkpgG~l~i~~ 303 (343)
T 2pjd_A 268 NPPFHDGMQTSLDAAQTLIR-GAVRHLNSGGELRIVA 303 (343)
T ss_dssp CCCCCSSSHHHHHHHHHHHH-HHGGGEEEEEEEEEEE
T ss_pred CCCcccCccCCHHHHHHHHH-HHHHhCCCCcEEEEEE
Confidence 98732 2345565 9999999999999987
|
| >1ne2_A Hypothetical protein TA1320; structural genomics, conserved hypothetical protein, PSI, protein structure initiative; 1.75A {Thermoplasma acidophilum} SCOP: c.66.1.32 | Back alignment and structure |
|---|
Probab=99.17 E-value=2.4e-10 Score=96.99 Aligned_cols=92 Identities=15% Similarity=0.081 Sum_probs=67.4
Q ss_pred CCCCCCEEEEEecCCCccHHHHHhhhCCCcEEEEEeCChHHHHHHHHHHHcC-CCeEEEEccCCCCcccccCCCcEeEEE
Q 021911 140 WIKPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKR-TNVIPIIEDARHPAKYRMLVGMVDVIF 218 (305)
Q Consensus 140 ~~~~g~~VLDlG~G~G~~t~~la~~~~~~~~V~avD~s~~~~~~l~~~a~~~-~nI~~~~~D~~~~~~~~~~~~~fD~V~ 218 (305)
...++.+|||+|||+|.++..++.. +..+|+++|+|+ .+++.++++ .++.+++.|+.+.+ .+||+|+
T Consensus 48 ~~~~~~~vlD~gcG~G~~~~~l~~~--~~~~v~~vD~~~----~~~~~a~~~~~~~~~~~~d~~~~~------~~~D~v~ 115 (200)
T 1ne2_A 48 GNIGGRSVIDAGTGNGILACGSYLL--GAESVTAFDIDP----DAIETAKRNCGGVNFMVADVSEIS------GKYDTWI 115 (200)
T ss_dssp TSSBTSEEEEETCTTCHHHHHHHHT--TBSEEEEEESCH----HHHHHHHHHCTTSEEEECCGGGCC------CCEEEEE
T ss_pred CCCCCCEEEEEeCCccHHHHHHHHc--CCCEEEEEECCH----HHHHHHHHhcCCCEEEECcHHHCC------CCeeEEE
Confidence 3457789999999999999999987 345799999999 444444443 28999999987642 6899999
Q ss_pred EeCCCh-----hHHHHHHHHHhccCCCCcEEEEE
Q 021911 219 SDVAQP-----DQARILALNASYFLKAGGHFVIS 247 (305)
Q Consensus 219 ~d~~~~-----~~~~~l~~~a~~~LkpGG~lv~s 247 (305)
+|+|.. .....+. .+.+.| |.++++
T Consensus 116 ~~~p~~~~~~~~~~~~l~-~~~~~~---g~~~~~ 145 (200)
T 1ne2_A 116 MNPPFGSVVKHSDRAFID-KAFETS---MWIYSI 145 (200)
T ss_dssp ECCCC-------CHHHHH-HHHHHE---EEEEEE
T ss_pred ECCCchhccCchhHHHHH-HHHHhc---CcEEEE
Confidence 999821 1234555 777777 444444
|
| >2ld4_A Anamorsin; methyltransferase-like fold, alpha/beta fold, iron-sulfur PR biogenesis, apoptosis; NMR {Homo sapiens} PDB: 2yui_A | Back alignment and structure |
|---|
Probab=99.17 E-value=7.1e-11 Score=98.29 Aligned_cols=116 Identities=17% Similarity=0.151 Sum_probs=78.3
Q ss_pred ccCCCCCCEEEEEecCCCccHHHHHhhhCCCcEEEEEeCChHHHHHHHHHHHcC--CCeEEEEccCCCCcccccCCCcEe
Q 021911 138 NIWIKPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKR--TNVIPIIEDARHPAKYRMLVGMVD 215 (305)
Q Consensus 138 ~~~~~~g~~VLDlG~G~G~~t~~la~~~~~~~~V~avD~s~~~~~~l~~~a~~~--~nI~~~~~D~~~~~~~~~~~~~fD 215 (305)
.+.++++.+|||++||. | .+|+|+ .|++.++++ .++.+++.|+.+.+......++||
T Consensus 7 ~~g~~~g~~vL~~~~g~----------------v-~vD~s~----~ml~~a~~~~~~~~~~~~~d~~~~~~~~~~~~~fD 65 (176)
T 2ld4_A 7 DFGISAGQFVAVVWDKS----------------S-PVEALK----GLVDKLQALTGNEGRVSVENIKQLLQSAHKESSFD 65 (176)
T ss_dssp TTTCCTTSEEEEEECTT----------------S-CHHHHH----HHHHHHHHHTTTTSEEEEEEGGGGGGGCCCSSCEE
T ss_pred ccCCCCCCEEEEecCCc----------------e-eeeCCH----HHHHHHHHhcccCcEEEEechhcCccccCCCCCEe
Confidence 34678999999999985 1 289999 555555543 369999999987653111357899
Q ss_pred EEEEeCC---C-hhHHHHHHHHHhccCCCCcEEEEEEcccccCCCCchhhhHHHHHHHHHHCCC
Q 021911 216 VIFSDVA---Q-PDQARILALNASYFLKAGGHFVISIKANCIDSTVPAEAVFQSEVKKLQQDQF 275 (305)
Q Consensus 216 ~V~~d~~---~-~~~~~~l~~~a~~~LkpGG~lv~s~~~~~i~~~~~~~~v~~~~~~~l~~~Gf 275 (305)
+|++... . ++..+++. +++++|||||+|++..+...............+..+.|+++||
T Consensus 66 ~V~~~~~l~~~~~~~~~~l~-~~~r~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf 128 (176)
T 2ld4_A 66 IILSGLVPGSTTLHSAEILA-EIARILRPGGCLFLKEPVETAVDNNSKVKTASKLCSALTLSGL 128 (176)
T ss_dssp EEEECCSTTCCCCCCHHHHH-HHHHHEEEEEEEEEEEEEESSSCSSSSSCCHHHHHHHHHHTTC
T ss_pred EEEECChhhhcccCHHHHHH-HHHHHCCCCEEEEEEcccccccccccccCCHHHHHHHHHHCCC
Confidence 9999654 2 56677777 9999999999999976321111000000112334577789999
|
| >2ih2_A Modification methylase TAQI; DNA, DNA methyltransferase, target base partner, 5-methylpyr 2(1H)-ONE, base flipping; HET: 5PY 6MA NEA; 1.61A {Thermus aquaticus} SCOP: c.66.1.27 d.287.1.1 PDB: 2ibs_A* 2ibt_A* 2ih4_A* 2ih5_A* 2jg3_A* 2np6_A* 2np7_A* 1aqj_A* 1aqi_A* 2adm_A* 1g38_A* | Back alignment and structure |
|---|
Probab=99.17 E-value=1.7e-10 Score=109.08 Aligned_cols=110 Identities=18% Similarity=0.187 Sum_probs=81.2
Q ss_pred HHHHHHHccccccCCCCCCEEEEEecCCCccHHHHHhhhCCCcEEEEEeCChHHHHHHHHHHHcCCCeEEEEccCCCCcc
Q 021911 127 KLAAAVLGGVDNIWIKPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKRTNVIPIIEDARHPAK 206 (305)
Q Consensus 127 ~l~a~ll~~l~~~~~~~g~~VLDlG~G~G~~t~~la~~~~~~~~V~avD~s~~~~~~l~~~a~~~~nI~~~~~D~~~~~~ 206 (305)
.++..++..+. ..++.+|||+|||+|.++..+++.+.+..+|+++|+++ .+++.+ .++.+++.|+.....
T Consensus 26 ~l~~~~~~~~~---~~~~~~vLD~gcGtG~~~~~~~~~~~~~~~i~gvDi~~----~~~~~a---~~~~~~~~D~~~~~~ 95 (421)
T 2ih2_A 26 EVVDFMVSLAE---APRGGRVLEPACAHGPFLRAFREAHGTAYRFVGVEIDP----KALDLP---PWAEGILADFLLWEP 95 (421)
T ss_dssp HHHHHHHHHCC---CCTTCEEEEETCTTCHHHHHHHHHHCSCSEEEEEESCT----TTCCCC---TTEEEEESCGGGCCC
T ss_pred HHHHHHHHhhc---cCCCCEEEECCCCChHHHHHHHHHhCCCCeEEEEECCH----HHHHhC---CCCcEEeCChhhcCc
Confidence 45555554332 34567999999999999999999875557999999999 444333 579999999876532
Q ss_pred cccCCCcEeEEEEeCCC--------------hhHHH-----------------HHHHHHhccCCCCcEEEEEEcc
Q 021911 207 YRMLVGMVDVIFSDVAQ--------------PDQAR-----------------ILALNASYFLKAGGHFVISIKA 250 (305)
Q Consensus 207 ~~~~~~~fD~V~~d~~~--------------~~~~~-----------------~l~~~a~~~LkpGG~lv~s~~~ 250 (305)
...||+|++|+|. .+... .+..++.++|+|+|++++.++.
T Consensus 96 ----~~~fD~Ii~NPPy~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fl~~~~~~Lk~~G~~~~i~p~ 166 (421)
T 2ih2_A 96 ----GEAFDLILGNPPYGIVGEASKYPIHVFKAVKDLYKKAFSTWKGKYNLYGAFLEKAVRLLKPGGVLVFVVPA 166 (421)
T ss_dssp ----SSCEEEEEECCCCCCBSCTTTCSBCCCHHHHHHHHHHCTTCCTTCCHHHHHHHHHHHHEEEEEEEEEEEEG
T ss_pred ----cCCCCEEEECcCccCcccccccccccCHHHHHHHHHhhhcccCCccHHHHHHHHHHHHhCCCCEEEEEECh
Confidence 3689999999882 11111 2333889999999999999853
|
| >1g6q_1 HnRNP arginine N-methyltransferase; SAM-binding domain, beta-barrel, mixed alpha-beta, hexamer; 2.90A {Saccharomyces cerevisiae} SCOP: c.66.1.6 | Back alignment and structure |
|---|
Probab=99.15 E-value=1.5e-10 Score=106.56 Aligned_cols=101 Identities=15% Similarity=0.113 Sum_probs=77.6
Q ss_pred CCCCCCEEEEEecCCCccHHHHHhhhCCCcEEEEEeCChHHHHHHHHHHHcC---CCeEEEEccCCCCcccccCCCcEeE
Q 021911 140 WIKPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKR---TNVIPIIEDARHPAKYRMLVGMVDV 216 (305)
Q Consensus 140 ~~~~g~~VLDlG~G~G~~t~~la~~~~~~~~V~avD~s~~~~~~l~~~a~~~---~nI~~~~~D~~~~~~~~~~~~~fD~ 216 (305)
...++.+|||+|||+|.++..+++. +..+|++||+|+ ++..+.+.++.. .+|++++.|+.+.+. ...+||+
T Consensus 35 ~~~~~~~VLDiGcGtG~ls~~la~~--g~~~v~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~---~~~~~D~ 108 (328)
T 1g6q_1 35 DLFKDKIVLDVGCGTGILSMFAAKH--GAKHVIGVDMSS-IIEMAKELVELNGFSDKITLLRGKLEDVHL---PFPKVDI 108 (328)
T ss_dssp HHHTTCEEEEETCTTSHHHHHHHHT--CCSEEEEEESST-HHHHHHHHHHHTTCTTTEEEEESCTTTSCC---SSSCEEE
T ss_pred hhcCCCEEEEecCccHHHHHHHHHC--CCCEEEEEChHH-HHHHHHHHHHHcCCCCCEEEEECchhhccC---CCCcccE
Confidence 3457789999999999999999986 445899999994 666666555544 469999999987642 2468999
Q ss_pred EEEeCC------ChhHHHHHHHHHhccCCCCcEEEEE
Q 021911 217 IFSDVA------QPDQARILALNASYFLKAGGHFVIS 247 (305)
Q Consensus 217 V~~d~~------~~~~~~~l~~~a~~~LkpGG~lv~s 247 (305)
|+++.+ ......++. ++.++|||||.|+..
T Consensus 109 Ivs~~~~~~l~~~~~~~~~l~-~~~~~LkpgG~li~~ 144 (328)
T 1g6q_1 109 IISEWMGYFLLYESMMDTVLY-ARDHYLVEGGLIFPD 144 (328)
T ss_dssp EEECCCBTTBSTTCCHHHHHH-HHHHHEEEEEEEESC
T ss_pred EEEeCchhhcccHHHHHHHHH-HHHhhcCCCeEEEEe
Confidence 999864 223455665 888999999999843
|
| >1zg3_A Isoflavanone 4'-O-methyltransferase; rossman fold, plant Pro transferase; HET: 2HI SAH; 2.35A {Medicago truncatula} PDB: 1zga_A* 1zhf_A* 1zgj_A* | Back alignment and structure |
|---|
Probab=99.15 E-value=2.4e-10 Score=106.20 Aligned_cols=139 Identities=14% Similarity=0.118 Sum_probs=95.6
Q ss_pred CCCCCEEEEEecCCCccHHHHHhhhCCCcEEEEEeCChHHHHHHHHHHHcCCCeEEEEccCCCCcccccCCCcEeEEEEe
Q 021911 141 IKPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKRTNVIPIIEDARHPAKYRMLVGMVDVIFSD 220 (305)
Q Consensus 141 ~~~g~~VLDlG~G~G~~t~~la~~~~~~~~V~avD~s~~~~~~l~~~a~~~~nI~~~~~D~~~~~~~~~~~~~fD~V~~d 220 (305)
..+..+|||+|||+|.++..+++.+ +..+++++|+ + .+++.+++.++|+++..|+.++ . ..||+|++.
T Consensus 191 ~~~~~~vlDvG~G~G~~~~~l~~~~-p~~~~~~~D~-~----~~~~~a~~~~~v~~~~~d~~~~--~----~~~D~v~~~ 258 (358)
T 1zg3_A 191 FEGLESLVDVGGGTGGVTKLIHEIF-PHLKCTVFDQ-P----QVVGNLTGNENLNFVGGDMFKS--I----PSADAVLLK 258 (358)
T ss_dssp HHTCSEEEEETCTTSHHHHHHHHHC-TTSEEEEEEC-H----HHHSSCCCCSSEEEEECCTTTC--C----CCCSEEEEE
T ss_pred ccCCCEEEEECCCcCHHHHHHHHHC-CCCeEEEecc-H----HHHhhcccCCCcEEEeCccCCC--C----CCceEEEEc
Confidence 3466899999999999999999986 5678999999 6 5566666557899999999762 1 259999986
Q ss_pred CC---ChhH--HHHHHHHHhccCCC---CcEEEEEEcccccCCCCc---hhhh----------------HHHHHHHHHHC
Q 021911 221 VA---QPDQ--ARILALNASYFLKA---GGHFVISIKANCIDSTVP---AEAV----------------FQSEVKKLQQD 273 (305)
Q Consensus 221 ~~---~~~~--~~~l~~~a~~~Lkp---GG~lv~s~~~~~i~~~~~---~~~v----------------~~~~~~~l~~~ 273 (305)
.. .++. .++|. ++++.||| ||+|++...........+ .... ..+..+.|+++
T Consensus 259 ~vlh~~~d~~~~~~l~-~~~~~L~p~~~gG~l~i~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~g~~~t~~e~~~ll~~a 337 (358)
T 1zg3_A 259 WVLHDWNDEQSLKILK-NSKEAISHKGKDGKVIIIDISIDETSDDRGLTELQLDYDLVMLTMFLGKERTKQEWEKLIYDA 337 (358)
T ss_dssp SCGGGSCHHHHHHHHH-HHHHHTGGGGGGCEEEEEECEECTTCSCHHHHHHHHHHHHHHHHHHSCCCEEHHHHHHHHHHT
T ss_pred ccccCCCHHHHHHHHH-HHHHhCCCCCCCcEEEEEEeccCCCCccchhhhHHHhhCHHHhccCCCCCCCHHHHHHHHHHc
Confidence 65 3343 37776 99999999 999999763211111100 0000 01123556889
Q ss_pred CCcEeEEeecCCCCCceEEEEE
Q 021911 274 QFKPFEQVTLEPFERDHACVVG 295 (305)
Q Consensus 274 Gf~~~e~~~l~p~~~~~~~vv~ 295 (305)
||+.+++.....+ ..++.+
T Consensus 338 Gf~~~~~~~~~~~---~~vie~ 356 (358)
T 1zg3_A 338 GFSSYKITPISGF---KSLIEV 356 (358)
T ss_dssp TCCEEEEEEETTT---EEEEEE
T ss_pred CCCeeEEEecCCC---cEEEEE
Confidence 9999988765333 444544
|
| >4hc4_A Protein arginine N-methyltransferase 6; HRMT1L6, S-adenosyl-L-homocysteine, struc genomics, structural genomics consortium, SGC; HET: SAH; 1.97A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.14 E-value=1.3e-10 Score=108.89 Aligned_cols=99 Identities=23% Similarity=0.239 Sum_probs=74.0
Q ss_pred CCCCCEEEEEecCCCccHHHHHhhhCCCcEEEEEeCChHHHHHHHHHHHcC---CCeEEEEccCCCCcccccCCCcEeEE
Q 021911 141 IKPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKR---TNVIPIIEDARHPAKYRMLVGMVDVI 217 (305)
Q Consensus 141 ~~~g~~VLDlG~G~G~~t~~la~~~~~~~~V~avD~s~~~~~~l~~~a~~~---~nI~~~~~D~~~~~~~~~~~~~fD~V 217 (305)
..++.+|||||||+|.++..+|+. ...+|||||.|+ .+..+.+.++.+ .+|++++.|+++.. ++.+||+|
T Consensus 81 ~~~~k~VLDvG~GtGiLs~~Aa~a--GA~~V~ave~s~-~~~~a~~~~~~n~~~~~i~~i~~~~~~~~----lpe~~Dvi 153 (376)
T 4hc4_A 81 ALRGKTVLDVGAGTGILSIFCAQA--GARRVYAVEASA-IWQQAREVVRFNGLEDRVHVLPGPVETVE----LPEQVDAI 153 (376)
T ss_dssp HHTTCEEEEETCTTSHHHHHHHHT--TCSEEEEEECST-THHHHHHHHHHTTCTTTEEEEESCTTTCC----CSSCEEEE
T ss_pred hcCCCEEEEeCCCccHHHHHHHHh--CCCEEEEEeChH-HHHHHHHHHHHcCCCceEEEEeeeeeeec----CCccccEE
Confidence 346899999999999998877775 345899999996 444455555544 57999999998764 35799999
Q ss_pred EEeCC-----Ch-hHHHHHHHHHhccCCCCcEEEEE
Q 021911 218 FSDVA-----QP-DQARILALNASYFLKAGGHFVIS 247 (305)
Q Consensus 218 ~~d~~-----~~-~~~~~l~~~a~~~LkpGG~lv~s 247 (305)
+++.. .. ....++. ...++|||+|.++-+
T Consensus 154 vsE~~~~~l~~e~~l~~~l~-a~~r~Lkp~G~~iP~ 188 (376)
T 4hc4_A 154 VSEWMGYGLLHESMLSSVLH-ARTKWLKEGGLLLPA 188 (376)
T ss_dssp ECCCCBTTBTTTCSHHHHHH-HHHHHEEEEEEEESC
T ss_pred EeecccccccccchhhhHHH-HHHhhCCCCceECCc
Confidence 99654 22 3444444 677999999998753
|
| >3fzg_A 16S rRNA methylase; methyltransferase, plasmid, transferase; HET: SAM; 2.00A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.11 E-value=3.4e-10 Score=95.82 Aligned_cols=134 Identities=12% Similarity=0.046 Sum_probs=82.9
Q ss_pred CCCCCEEEEEecCCCccHHHHHhhhCCCcEEEEEeCChHHHHHHHHHHHcC--C-CeEEEEccCCCCcccccCCCcEeEE
Q 021911 141 IKPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKR--T-NVIPIIEDARHPAKYRMLVGMVDVI 217 (305)
Q Consensus 141 ~~~g~~VLDlG~G~G~~t~~la~~~~~~~~V~avD~s~~~~~~l~~~a~~~--~-nI~~~~~D~~~~~~~~~~~~~fD~V 217 (305)
+.+..+|||||||+|.++..++... |..+|+|+|+|+++++-..+.+... . ++.+ .|.... ....+||+|
T Consensus 47 l~~~~~VLDlGCG~GplAl~l~~~~-p~a~~~A~Di~~~~leiar~~~~~~g~~~~v~~--~d~~~~----~~~~~~DvV 119 (200)
T 3fzg_A 47 IKHVSSILDFGCGFNPLALYQWNEN-EKIIYHAYDIDRAEIAFLSSIIGKLKTTIKYRF--LNKESD----VYKGTYDVV 119 (200)
T ss_dssp SCCCSEEEEETCTTHHHHHHHHCSS-CCCEEEEECSCHHHHHHHHHHHHHSCCSSEEEE--ECCHHH----HTTSEEEEE
T ss_pred cCCCCeEEEecCCCCHHHHHHHhcC-CCCEEEEEeCCHHHHHHHHHHHHhcCCCccEEE--eccccc----CCCCCcChh
Confidence 4567899999999999999998875 5669999999996655555555443 2 4444 555332 235789999
Q ss_pred EEeCCC---hhHHHHHHHHHhccCCCCcEEEEEEcccccCCCC-chhhhHHHHHHHHHHCCCcEeEEeec
Q 021911 218 FSDVAQ---PDQARILALNASYFLKAGGHFVISIKANCIDSTV-PAEAVFQSEVKKLQQDQFKPFEQVTL 283 (305)
Q Consensus 218 ~~d~~~---~~~~~~l~~~a~~~LkpGG~lv~s~~~~~i~~~~-~~~~v~~~~~~~l~~~Gf~~~e~~~l 283 (305)
++.... .++...+. .+.+.|||+|.||-. +..++.... -.+.-.....+..-...+.+++.+.+
T Consensus 120 La~k~LHlL~~~~~al~-~v~~~L~pggvfISf-ptksl~Gr~~gm~~~Y~~~~~~~~~~~~~~~~~~~~ 187 (200)
T 3fzg_A 120 FLLKMLPVLKQQDVNIL-DFLQLFHTQNFVISF-PIKSLSGKEKGMEENYQLWFESFTKGWIKILDSKVI 187 (200)
T ss_dssp EEETCHHHHHHTTCCHH-HHHHTCEEEEEEEEE-ECCCCC--CTTCCCCHHHHHHHHTTTTSCEEEEEEE
T ss_pred hHhhHHHhhhhhHHHHH-HHHHHhCCCCEEEEe-ChHHhcCCCcchhhhHHHHHHHhccCcceeeeeeee
Confidence 986662 23334455 888999999766544 222322222 11222222333333455666666644
|
| >1zq9_A Probable dimethyladenosine transferase; SGC, structural genomics, structural genomics consortium; HET: SAM; 1.90A {Homo sapiens} SCOP: c.66.1.24 | Back alignment and structure |
|---|
Probab=99.10 E-value=3.7e-10 Score=101.99 Aligned_cols=83 Identities=14% Similarity=0.221 Sum_probs=64.5
Q ss_pred CCCCCCEEEEEecCCCccHHHHHhhhCCCcEEEEEeCChHHHHHHHHHHHcC---CCeEEEEccCCCCcccccCCCcEeE
Q 021911 140 WIKPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKR---TNVIPIIEDARHPAKYRMLVGMVDV 216 (305)
Q Consensus 140 ~~~~g~~VLDlG~G~G~~t~~la~~~~~~~~V~avD~s~~~~~~l~~~a~~~---~nI~~~~~D~~~~~~~~~~~~~fD~ 216 (305)
.+.++.+|||+|||+|.++..+++.. .+|++||+|+.++..+.+.+... +++++++.|+...+ ...||+
T Consensus 25 ~~~~~~~VLDiG~G~G~lt~~L~~~~---~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~D~~~~~-----~~~fD~ 96 (285)
T 1zq9_A 25 ALRPTDVVLEVGPGTGNMTVKLLEKA---KKVVACELDPRLVAELHKRVQGTPVASKLQVLVGDVLKTD-----LPFFDT 96 (285)
T ss_dssp CCCTTCEEEEECCTTSTTHHHHHHHS---SEEEEEESCHHHHHHHHHHHTTSTTGGGEEEEESCTTTSC-----CCCCSE
T ss_pred CCCCCCEEEEEcCcccHHHHHHHhhC---CEEEEEECCHHHHHHHHHHHHhcCCCCceEEEEcceeccc-----chhhcE
Confidence 46788999999999999999999983 48999999996665555554332 47999999998753 237999
Q ss_pred EEEeCCChhHHHHH
Q 021911 217 IFSDVAQPDQARIL 230 (305)
Q Consensus 217 V~~d~~~~~~~~~l 230 (305)
|++++|......++
T Consensus 97 vv~nlpy~~~~~~~ 110 (285)
T 1zq9_A 97 CVANLPYQISSPFV 110 (285)
T ss_dssp EEEECCGGGHHHHH
T ss_pred EEEecCcccchHHH
Confidence 99999965444443
|
| >1af7_A Chemotaxis receptor methyltransferase CHER; chemotaxis receptor methylation; HET: SAH; 2.00A {Salmonella typhimurium} SCOP: a.58.1.1 c.66.1.8 PDB: 1bc5_A* | Back alignment and structure |
|---|
Probab=99.10 E-value=3.2e-10 Score=101.88 Aligned_cols=103 Identities=19% Similarity=0.167 Sum_probs=73.1
Q ss_pred CCCEEEEEecCCCc----cHHHHHhhhCC---CcEEEEEeCChHHHHHHHHHHH--------------------c-----
Q 021911 143 PGARVLYLGAASGT----TVSHVSDIVGP---NGVVYAVEFSHRSGRDLVNMAK--------------------K----- 190 (305)
Q Consensus 143 ~g~~VLDlG~G~G~----~t~~la~~~~~---~~~V~avD~s~~~~~~l~~~a~--------------------~----- 190 (305)
+..+|||+|||+|. .+..|++.++. ..+|+|+|+|+.+++.+.+.+. .
T Consensus 105 ~~~rIld~GCgTGee~ysiAi~L~e~~~~~~~~~~I~atDis~~~L~~Ar~~~y~~~~~~~~~~~~~~~~f~~~~~~~~~ 184 (274)
T 1af7_A 105 GEYRVWSAAASTGEEPYSIAITLADALGMAPGRWKVFASDIDTEVLEKARSGIYRLSELKTLSPQQLQRYFMRGTGPHEG 184 (274)
T ss_dssp SCEEEEESCCTTTHHHHHHHHHHHHHHCSCTTSEEEEEEESCHHHHHHHHHTEEEGGGGTTSCHHHHHHHEEECCTTSCS
T ss_pred CCcEEEEeeccCChhHHHHHHHHHHhcccCCCCeEEEEEECCHHHHHHHHhcCCchhhhhcCCHHHHHHHhhccccCCCC
Confidence 45799999999998 55566666542 3589999999955444433210 0
Q ss_pred --------CCCeEEEEccCCCCcccccCCCcEeEEEEeCC-----ChhHHHHHHHHHhccCCCCcEEEEEE
Q 021911 191 --------RTNVIPIIEDARHPAKYRMLVGMVDVIFSDVA-----QPDQARILALNASYFLKAGGHFVISI 248 (305)
Q Consensus 191 --------~~nI~~~~~D~~~~~~~~~~~~~fD~V~~d~~-----~~~~~~~l~~~a~~~LkpGG~lv~s~ 248 (305)
+.+|.|.+.|+.+++ .. ....||+|+|... .+.+.+++. ++++.|||||+|++..
T Consensus 185 ~~~v~~~lr~~V~F~~~dl~~~~-~~-~~~~fDlI~crnvliyf~~~~~~~vl~-~~~~~L~pgG~L~lg~ 252 (274)
T 1af7_A 185 LVRVRQELANYVEFSSVNLLEKQ-YN-VPGPFDAIFCRNVMIYFDKTTQEDILR-RFVPLLKPDGLLFAGH 252 (274)
T ss_dssp EEEECHHHHTTEEEEECCTTCSS-CC-CCCCEEEEEECSSGGGSCHHHHHHHHH-HHGGGEEEEEEEEECT
T ss_pred ceeechhhcccCeEEecccCCCC-CC-cCCCeeEEEECCchHhCCHHHHHHHHH-HHHHHhCCCcEEEEEe
Confidence 026899999998742 11 1368999999544 245677777 9999999999999864
|
| >3evf_A RNA-directed RNA polymerase NS5; NS5 methyltransferase, RNA CAP binding, binding, capsid protein; HET: GTA SAH; 1.45A {Yellow fever virus} SCOP: c.66.1.0 PDB: 3evb_A* 3evc_A* 3evd_A* 3eve_A* 3eva_A* | Back alignment and structure |
|---|
Probab=99.06 E-value=2.1e-10 Score=101.98 Aligned_cols=116 Identities=16% Similarity=0.184 Sum_probs=82.4
Q ss_pred hhhHHHHHHHccccccCCCCCCEEEEEecCCCccHHHHHhhhCCCcEEEEEeCChHHHHHHHHHHHcC----CCeEEEEc
Q 021911 124 FRSKLAAAVLGGVDNIWIKPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKR----TNVIPIIE 199 (305)
Q Consensus 124 ~~s~l~a~ll~~l~~~~~~~g~~VLDlG~G~G~~t~~la~~~~~~~~V~avD~s~~~~~~l~~~a~~~----~nI~~~~~ 199 (305)
|+|..+..|++..++..++++.+|||||||+|.++..+++.. +...|+++|++. ++....... .++..++.
T Consensus 55 YrSRaA~KL~ei~ek~~l~~~~~VLDLGaAPGGWSQvAa~~~-~~~~v~g~dVGv----Dl~~~pi~~~~~g~~ii~~~~ 129 (277)
T 3evf_A 55 AVSRGTAKLRWFHERGYVKLEGRVIDLGCGRGGWCYYAAAQK-EVSGVKGFTLGR----DGHEKPMNVQSLGWNIITFKD 129 (277)
T ss_dssp CSSTHHHHHHHHHHTTSSCCCEEEEEETCTTCHHHHHHHTST-TEEEEEEECCCC----TTCCCCCCCCBTTGGGEEEEC
T ss_pred ccccHHHHHHHHHHhCCCCCCCEEEEecCCCCHHHHHHHHhc-CCCcceeEEEec----cCcccccccCcCCCCeEEEec
Confidence 477888888877777678899999999999999999998764 345788999885 331001110 26676777
Q ss_pred cCCCCcccccCCCcEeEEEEeCCCh------hHHH---HHHHHHhccCCCC-cEEEEEE
Q 021911 200 DARHPAKYRMLVGMVDVIFSDVAQP------DQAR---ILALNASYFLKAG-GHFVISI 248 (305)
Q Consensus 200 D~~~~~~~~~~~~~fD~V~~d~~~~------~~~~---~l~~~a~~~LkpG-G~lv~s~ 248 (305)
|+.... +...+||+|+||++.. |+.+ +|. .|.++|||| |.|++.+
T Consensus 130 ~~dv~~---l~~~~~DlVlsD~apnsG~~~~D~~rs~~LL~-~a~~~LkpG~G~FV~KV 184 (277)
T 3evf_A 130 KTDIHR---LEPVKCDTLLCDIGESSSSSVTEGERTVRVLD-TVEKWLACGVDNFCVKV 184 (277)
T ss_dssp SCCTTT---SCCCCCSEEEECCCCCCSCHHHHHHHHHHHHH-HHHHHHTTCCSEEEEEE
T ss_pred cceehh---cCCCCccEEEecCccCcCchHHHHHHHHHHHH-HHHHHhCCCCCeEEEEe
Confidence 653221 2356899999998632 3333 334 788999999 9999987
|
| >3axs_A Probable N(2),N(2)-dimethylguanosine tRNA methylt TRM1; structural genomics, riken structural genomics/proteomics in RSGI; HET: SFG; 2.16A {Aquifex aeolicus} PDB: 3axt_A* | Back alignment and structure |
|---|
Probab=99.05 E-value=1.6e-10 Score=108.76 Aligned_cols=103 Identities=14% Similarity=-0.027 Sum_probs=80.6
Q ss_pred CCCCEEEEEecCCCccHHHHHhhhCCCcEEEEEeCChHHHHHHHHHHHcC--CC--eEEEEccCCCCcc-cccCCCcEeE
Q 021911 142 KPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKR--TN--VIPIIEDARHPAK-YRMLVGMVDV 216 (305)
Q Consensus 142 ~~g~~VLDlG~G~G~~t~~la~~~~~~~~V~avD~s~~~~~~l~~~a~~~--~n--I~~~~~D~~~~~~-~~~~~~~fD~ 216 (305)
+++.+|||++||+|.+++++|........|++||+++.+++.+.++++.+ .+ +++++.|+..... . ....||+
T Consensus 51 ~~g~~VLDlfaGtG~~sl~aa~~~~ga~~V~avDi~~~av~~~~~N~~~Ngl~~~~v~v~~~Da~~~l~~~--~~~~fD~ 128 (392)
T 3axs_A 51 GRPVKVADPLSASGIRAIRFLLETSCVEKAYANDISSKAIEIMKENFKLNNIPEDRYEIHGMEANFFLRKE--WGFGFDY 128 (392)
T ss_dssp CSCEEEEESSCTTSHHHHHHHHHCSCEEEEEEECSCHHHHHHHHHHHHHTTCCGGGEEEECSCHHHHHHSC--CSSCEEE
T ss_pred CCCCEEEECCCcccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHhCCCCceEEEEeCCHHHHHHHh--hCCCCcE
Confidence 46889999999999999999997533368999999998888888887765 34 9999999876543 2 2458999
Q ss_pred EEEeCCChhHHHHHHHHHhccCCCCcEEEEEE
Q 021911 217 IFSDVAQPDQARILALNASYFLKAGGHFVISI 248 (305)
Q Consensus 217 V~~d~~~~~~~~~l~~~a~~~LkpGG~lv~s~ 248 (305)
|++|+.... ..++. .+.+.|+++|.|+++.
T Consensus 129 V~lDP~g~~-~~~l~-~a~~~Lk~gGll~~t~ 158 (392)
T 3axs_A 129 VDLDPFGTP-VPFIE-SVALSMKRGGILSLTA 158 (392)
T ss_dssp EEECCSSCC-HHHHH-HHHHHEEEEEEEEEEE
T ss_pred EEECCCcCH-HHHHH-HHHHHhCCCCEEEEEe
Confidence 999995321 23555 7888999999777764
|
| >2px2_A Genome polyprotein [contains: capsid protein C (core protein); envelope protein M...; methyltransferase, SAH; HET: SAH; 2.00A {Murray valley encephalitis virus} PDB: 2px4_A* 2px5_A* 2pxa_A* 2pxc_A* 2px8_A* 2oy0_A* | Back alignment and structure |
|---|
Probab=99.04 E-value=9.8e-11 Score=102.73 Aligned_cols=112 Identities=20% Similarity=0.183 Sum_probs=77.9
Q ss_pred chhhHHHHHHHccccccCCCCCCEEEEEecCCCccHHHHHhh--hCC-CcEEEEEeC--ChHHHHHHHHHHHcCCCe---
Q 021911 123 PFRSKLAAAVLGGVDNIWIKPGARVLYLGAASGTTVSHVSDI--VGP-NGVVYAVEF--SHRSGRDLVNMAKKRTNV--- 194 (305)
Q Consensus 123 ~~~s~l~a~ll~~l~~~~~~~g~~VLDlG~G~G~~t~~la~~--~~~-~~~V~avD~--s~~~~~~l~~~a~~~~nI--- 194 (305)
.|+|..+..|++.-++..++|+.+||||||++|.++..+++. ++. .+.|+++|+ .| +.....++
T Consensus 53 ~yRSRAayKL~EIdeK~likpg~~VVDLGaAPGGWSQvAa~~~~vg~V~G~vig~D~~~~P--------~~~~~~Gv~~i 124 (269)
T 2px2_A 53 HPVSRGTAKLRWLVERRFVQPIGKVVDLGCGRGGWSYYAATMKNVQEVRGYTKGGPGHEEP--------MLMQSYGWNIV 124 (269)
T ss_dssp CCSSTHHHHHHHHHHTTSCCCCEEEEEETCTTSHHHHHHTTSTTEEEEEEECCCSTTSCCC--------CCCCSTTGGGE
T ss_pred CcccHHHHHHHHHHHcCCCCCCCEEEEcCCCCCHHHHHHhhhcCCCCceeEEEccccccCC--------CcccCCCceEE
Confidence 357888888877666667899999999999999999999998 432 345566662 22 11100233
Q ss_pred EEEEc-cCCCCcccccCCCcEeEEEEeCCC------hhHHHH---HHHHHhccCCCCc-EEEEEE
Q 021911 195 IPIIE-DARHPAKYRMLVGMVDVIFSDVAQ------PDQARI---LALNASYFLKAGG-HFVISI 248 (305)
Q Consensus 195 ~~~~~-D~~~~~~~~~~~~~fD~V~~d~~~------~~~~~~---l~~~a~~~LkpGG-~lv~s~ 248 (305)
.+++. |+++.. ..++|+|+||++. .||.+. |. -|.++|+|+| .|++-+
T Consensus 125 ~~~~G~Df~~~~-----~~~~DvVLSDMAPnSG~~~vD~~Rs~~aL~-~A~~~Lk~gG~~FvvKV 183 (269)
T 2px2_A 125 TMKSGVDVFYKP-----SEISDTLLCDIGESSPSAEIEEQRTLRILE-MVSDWLSRGPKEFCIKI 183 (269)
T ss_dssp EEECSCCGGGSC-----CCCCSEEEECCCCCCSCHHHHHHHHHHHHH-HHHHHHTTCCSEEEEEE
T ss_pred EeeccCCccCCC-----CCCCCEEEeCCCCCCCccHHHHHHHHHHHH-HHHHHhhcCCcEEEEEE
Confidence 34446 987643 3589999999972 355544 33 4668999999 898876
|
| >2dul_A N(2),N(2)-dimethylguanosine tRNA methyltransferas; tRNA modification enzyme, guanine 26, N(2),N(2)-dimethyltran structural genomics; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.58 PDB: 2ejt_A* 2eju_A* 2ytz_A* | Back alignment and structure |
|---|
Probab=99.04 E-value=3.3e-10 Score=106.32 Aligned_cols=100 Identities=14% Similarity=-0.016 Sum_probs=78.3
Q ss_pred CCCEEEEEecCCCccHHHHHhhhCCCcEEEEEeCChHHHHHHHHHHHcC-----------------CCeEEEEccCCCCc
Q 021911 143 PGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKR-----------------TNVIPIIEDARHPA 205 (305)
Q Consensus 143 ~g~~VLDlG~G~G~~t~~la~~~~~~~~V~avD~s~~~~~~l~~~a~~~-----------------~nI~~~~~D~~~~~ 205 (305)
++.+|||+|||+|..++++|..++ ...|+++|+++.+++.+.++++.+ .++++++.|+....
T Consensus 47 ~~~~VLDl~aGtG~~~l~~a~~~~-~~~V~avDi~~~av~~a~~N~~~n~~~~~~~~~~~~~~~gl~~i~v~~~Da~~~~ 125 (378)
T 2dul_A 47 NPKIVLDALSATGIRGIRFALETP-AEEVWLNDISEDAYELMKRNVMLNFDGELRESKGRAILKGEKTIVINHDDANRLM 125 (378)
T ss_dssp CCSEEEESSCTTSHHHHHHHHHSS-CSEEEEEESCHHHHHHHHHHHHHHCCSCCEECSSEEEEESSSEEEEEESCHHHHH
T ss_pred CCCEEEECCCchhHHHHHHHHhCC-CCeEEEEECCHHHHHHHHHHHHHhcccccccccccccccCCCceEEEcCcHHHHH
Confidence 678999999999999999999864 457999999998877777666543 24889999987654
Q ss_pred ccccCCCcEeEEEEeCCChhHHHHHHHHHhccCCCCcEEEEE
Q 021911 206 KYRMLVGMVDVIFSDVAQPDQARILALNASYFLKAGGHFVIS 247 (305)
Q Consensus 206 ~~~~~~~~fD~V~~d~~~~~~~~~l~~~a~~~LkpGG~lv~s 247 (305)
.. ....||+|++|++.. ...++. .+.+.||++|.|+++
T Consensus 126 ~~--~~~~fD~I~lDP~~~-~~~~l~-~a~~~lk~gG~l~vt 163 (378)
T 2dul_A 126 AE--RHRYFHFIDLDPFGS-PMEFLD-TALRSAKRRGILGVT 163 (378)
T ss_dssp HH--STTCEEEEEECCSSC-CHHHHH-HHHHHEEEEEEEEEE
T ss_pred Hh--ccCCCCEEEeCCCCC-HHHHHH-HHHHhcCCCCEEEEE
Confidence 32 135899999998743 245555 788999999977775
|
| >3ldg_A Putative uncharacterized protein SMU.472; YPSC, methyltransferase, transferase; HET: SAH; 1.96A {Streptococcus mutans} | Back alignment and structure |
|---|
Probab=99.03 E-value=2.2e-09 Score=100.88 Aligned_cols=120 Identities=15% Similarity=0.005 Sum_probs=87.3
Q ss_pred CchhhHHHHHHHccccccCCCCCCEEEEEecCCCccHHHHHhhhCC----------------------------------
Q 021911 122 NPFRSKLAAAVLGGVDNIWIKPGARVLYLGAASGTTVSHVSDIVGP---------------------------------- 167 (305)
Q Consensus 122 ~~~~s~l~a~ll~~l~~~~~~~g~~VLDlG~G~G~~t~~la~~~~~---------------------------------- 167 (305)
.|....|++.++... ..+++..|||.+||+|++++.+|.+...
T Consensus 176 Apl~e~LAaall~l~---~~~~~~~llDp~CGSGt~lIEAa~~a~~iapg~~R~f~f~~w~~~~~~~w~~~~~~a~~~~~ 252 (384)
T 3ldg_A 176 APIKENMAAAIILLS---NWFPDKPFVDPTCGSGTFCIEAAMIGMNIAPGFNRDFAFEEWPWVDEALVTRVRNEADEQAD 252 (384)
T ss_dssp CCCCHHHHHHHHHHT---TCCTTSCEEETTCTTSHHHHHHHHHHTTCCTTTTCCCGGGGCTTSCHHHHHHHHHHHHHHCC
T ss_pred CCCcHHHHHHHHHHh---CCCCCCeEEEeCCcCCHHHHHHHHHhcCcCCCccccchhhhhccCCHHHHHHHHHHHHHhhh
Confidence 466778888876432 4567899999999999999999876431
Q ss_pred ---CcEEEEEeCChHHHHHHHHHHHcC---CCeEEEEccCCCCcccccCCCcEeEEEEeCCC------hhHHHHHHHHHh
Q 021911 168 ---NGVVYAVEFSHRSGRDLVNMAKKR---TNVIPIIEDARHPAKYRMLVGMVDVIFSDVAQ------PDQARILALNAS 235 (305)
Q Consensus 168 ---~~~V~avD~s~~~~~~l~~~a~~~---~nI~~~~~D~~~~~~~~~~~~~fD~V~~d~~~------~~~~~~l~~~a~ 235 (305)
...|+++|+|+.+++.+.++++.. .+|++++.|+.+... ...||+|++|+|. ......+...+.
T Consensus 253 ~~~~~~v~GvDid~~al~~Ar~Na~~~gl~~~I~~~~~D~~~l~~----~~~fD~Iv~NPPYG~rl~~~~~l~~ly~~lg 328 (384)
T 3ldg_A 253 YDIQLDISGFDFDGRMVEIARKNAREVGLEDVVKLKQMRLQDFKT----NKINGVLISNPPYGERLLDDKAVDILYNEMG 328 (384)
T ss_dssp TTCCCCEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCGGGCCC----CCCSCEEEECCCCTTTTSCHHHHHHHHHHHH
T ss_pred ccCCceEEEEECCHHHHHHHHHHHHHcCCCCceEEEECChHHCCc----cCCcCEEEECCchhhccCCHHHHHHHHHHHH
Confidence 146999999997777766666554 359999999987643 3589999999993 122222222555
Q ss_pred ccCCC--CcEEEEEE
Q 021911 236 YFLKA--GGHFVISI 248 (305)
Q Consensus 236 ~~Lkp--GG~lv~s~ 248 (305)
+.||+ |+.+++.+
T Consensus 329 ~~lk~~~g~~~~iit 343 (384)
T 3ldg_A 329 ETFAPLKTWSQFILT 343 (384)
T ss_dssp HHHTTCTTSEEEEEE
T ss_pred HHHhhCCCcEEEEEE
Confidence 55655 99998887
|
| >3k0b_A Predicted N6-adenine-specific DNA methylase; methylase,PF01170, putative RNA methylase, PSI,MCSG, structu genomics; 1.50A {Listeria monocytogenes str} | Back alignment and structure |
|---|
Probab=99.00 E-value=2.1e-09 Score=101.35 Aligned_cols=119 Identities=11% Similarity=-0.037 Sum_probs=85.8
Q ss_pred CchhhHHHHHHHccccccCCCCCCEEEEEecCCCccHHHHHhhhCC----------------------------------
Q 021911 122 NPFRSKLAAAVLGGVDNIWIKPGARVLYLGAASGTTVSHVSDIVGP---------------------------------- 167 (305)
Q Consensus 122 ~~~~s~l~a~ll~~l~~~~~~~g~~VLDlG~G~G~~t~~la~~~~~---------------------------------- 167 (305)
.|....+++.++... ...++..|||++||+|++++.+|.+...
T Consensus 183 Apl~e~lAa~ll~l~---~~~~~~~vlDp~CGSGt~~ieaa~~~~~~apg~~R~f~f~~w~~~~~~~w~~~~~~a~~~~~ 259 (393)
T 3k0b_A 183 APIKETMAAALVLLT---SWHPDRPFYDPVCGSGTIPIEAALIGQNIAPGFNREFVSETWDWMPKQVWADARQEAEDLAN 259 (393)
T ss_dssp CSCCHHHHHHHHHHS---CCCTTSCEEETTCTTSHHHHHHHHHHTTCCTTTTSCCGGGGCTTSCHHHHHHHHHHHHHHCC
T ss_pred CCCcHHHHHHHHHHh---CCCCCCeEEEcCCCCCHHHHHHHHHhcCcCCCccccchhhccccCCHHHHHHHHHHHHHhhc
Confidence 356777888876433 4567899999999999999999876431
Q ss_pred ---CcEEEEEeCChHHHHHHHHHHHcC---CCeEEEEccCCCCcccccCCCcEeEEEEeCCC-------hhHHHHHHHHH
Q 021911 168 ---NGVVYAVEFSHRSGRDLVNMAKKR---TNVIPIIEDARHPAKYRMLVGMVDVIFSDVAQ-------PDQARILALNA 234 (305)
Q Consensus 168 ---~~~V~avD~s~~~~~~l~~~a~~~---~nI~~~~~D~~~~~~~~~~~~~fD~V~~d~~~-------~~~~~~l~~~a 234 (305)
...|+++|+|+.+++.+.++++.. .+|++++.|+.+... ..+||+|++|+|. .+...++. .+
T Consensus 260 ~~~~~~V~GvDid~~al~~Ar~Na~~~gl~~~I~~~~~D~~~~~~----~~~fD~Iv~NPPYg~rl~~~~~l~~ly~-~l 334 (393)
T 3k0b_A 260 YDQPLNIIGGDIDARLIEIAKQNAVEAGLGDLITFRQLQVADFQT----EDEYGVVVANPPYGERLEDEEAVRQLYR-EM 334 (393)
T ss_dssp TTCCCCEEEEESCHHHHHHHHHHHHHTTCTTCSEEEECCGGGCCC----CCCSCEEEECCCCCCSHHHHHHHHHHHH-HH
T ss_pred ccCCceEEEEECCHHHHHHHHHHHHHcCCCCceEEEECChHhCCC----CCCCCEEEECCCCccccCCchhHHHHHH-HH
Confidence 146999999997777666666544 369999999987643 3589999999993 12222222 44
Q ss_pred hccCCC--CcEEEEEE
Q 021911 235 SYFLKA--GGHFVISI 248 (305)
Q Consensus 235 ~~~Lkp--GG~lv~s~ 248 (305)
.+.||+ ++.+++.+
T Consensus 335 g~~lk~~~g~~~~iit 350 (393)
T 3k0b_A 335 GIVYKRMPTWSVYVLT 350 (393)
T ss_dssp HHHHHTCTTCEEEEEE
T ss_pred HHHHhcCCCCEEEEEE
Confidence 455554 88888887
|
| >3ldu_A Putative methylase; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; HET: MSE GTP; 1.70A {Clostridium difficile} | Back alignment and structure |
|---|
Probab=99.00 E-value=1e-09 Score=103.25 Aligned_cols=120 Identities=17% Similarity=0.101 Sum_probs=85.7
Q ss_pred CchhhHHHHHHHccccccCCCCCCEEEEEecCCCccHHHHHhhhC-----------------------------------
Q 021911 122 NPFRSKLAAAVLGGVDNIWIKPGARVLYLGAASGTTVSHVSDIVG----------------------------------- 166 (305)
Q Consensus 122 ~~~~s~l~a~ll~~l~~~~~~~g~~VLDlG~G~G~~t~~la~~~~----------------------------------- 166 (305)
.|....+++.++... ...++..|||++||+|++++.+|.+..
T Consensus 177 Apl~e~lAa~ll~~~---~~~~~~~vlDp~CGSGt~lieaa~~~~~~apg~~R~f~f~~w~~~~~~~w~~~~~~a~~~~~ 253 (385)
T 3ldu_A 177 APIRETLAAGLIYLT---PWKAGRVLVDPMCGSGTILIEAAMIGINMAPGLNREFISEKWRTLDKKIWWDVRKDAFNKID 253 (385)
T ss_dssp CCCCHHHHHHHHHTS---CCCTTSCEEETTCTTCHHHHHHHHHHTTCCTTTTSCCGGGGCTTSCHHHHHHHHHHHHHHSC
T ss_pred CCCcHHHHHHHHHhh---CCCCCCeEEEcCCCCCHHHHHHHHHHhhhCCCcccccchhhcccCCHHHHHHHHHHHHHHhh
Confidence 356677888876533 456789999999999999999987642
Q ss_pred --CCcEEEEEeCChHHHHHHHHHHHcC---CCeEEEEccCCCCcccccCCCcEeEEEEeCCCh------hHHHHHHHHHh
Q 021911 167 --PNGVVYAVEFSHRSGRDLVNMAKKR---TNVIPIIEDARHPAKYRMLVGMVDVIFSDVAQP------DQARILALNAS 235 (305)
Q Consensus 167 --~~~~V~avD~s~~~~~~l~~~a~~~---~nI~~~~~D~~~~~~~~~~~~~fD~V~~d~~~~------~~~~~l~~~a~ 235 (305)
....|+++|+|+.+++.+.+++... .+|++++.|+.+... ..+||+|++|+|.- .....+...+.
T Consensus 254 ~~~~~~V~GvDid~~ai~~Ar~Na~~~gl~~~i~~~~~D~~~l~~----~~~~D~Iv~NPPyg~rl~~~~~l~~ly~~lg 329 (385)
T 3ldu_A 254 NESKFKIYGYDIDEESIDIARENAEIAGVDEYIEFNVGDATQFKS----EDEFGFIITNPPYGERLEDKDSVKQLYKELG 329 (385)
T ss_dssp CSCCCCEEEEESCHHHHHHHHHHHHHHTCGGGEEEEECCGGGCCC----SCBSCEEEECCCCCCSHHHHHHHHHHHHHHH
T ss_pred ccCCceEEEEECCHHHHHHHHHHHHHcCCCCceEEEECChhhcCc----CCCCcEEEECCCCcCccCCHHHHHHHHHHHH
Confidence 1247999999997766666555443 379999999987643 35899999999931 12222222555
Q ss_pred ccCCC--CcEEEEEE
Q 021911 236 YFLKA--GGHFVISI 248 (305)
Q Consensus 236 ~~Lkp--GG~lv~s~ 248 (305)
+.||+ ++.+++.+
T Consensus 330 ~~lk~~~g~~~~iit 344 (385)
T 3ldu_A 330 YAFRKLKNWSYYLIT 344 (385)
T ss_dssp HHHHTSBSCEEEEEE
T ss_pred HHHhhCCCCEEEEEE
Confidence 56665 88888877
|
| >4auk_A Ribosomal RNA large subunit methyltransferase M; YGDE; HET: TLA PGE; 1.90A {Escherichia coli} PDB: 4atn_A* 4b17_A* | Back alignment and structure |
|---|
Probab=99.00 E-value=1.1e-08 Score=94.86 Aligned_cols=145 Identities=15% Similarity=0.072 Sum_probs=88.5
Q ss_pred CCCCCCEEEEEecCCCccHHHHHhhhCCCcEEEEEeCChHHHHHHHHHHHcCCCeEEEEccCCCCcccccCCCcEeEEEE
Q 021911 140 WIKPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKRTNVIPIIEDARHPAKYRMLVGMVDVIFS 219 (305)
Q Consensus 140 ~~~~g~~VLDlG~G~G~~t~~la~~~~~~~~V~avD~s~~~~~~l~~~a~~~~nI~~~~~D~~~~~~~~~~~~~fD~V~~ 219 (305)
.++++++||||||+||.+|..+++. .+.|+|||+.+ |...+...++|++++.|+....+. ...||+|+|
T Consensus 208 ~l~~G~~vlDLGAaPGGWT~~l~~r---g~~V~aVD~~~-----l~~~l~~~~~V~~~~~d~~~~~~~---~~~~D~vvs 276 (375)
T 4auk_A 208 RLANGMWAVDLGACPGGWTYQLVKR---NMWVYSVDNGP-----MAQSLMDTGQVTWLREDGFKFRPT---RSNISWMVC 276 (375)
T ss_dssp HSCTTCEEEEETCTTCHHHHHHHHT---TCEEEEECSSC-----CCHHHHTTTCEEEECSCTTTCCCC---SSCEEEEEE
T ss_pred cCCCCCEEEEeCcCCCHHHHHHHHC---CCEEEEEEhhh-----cChhhccCCCeEEEeCccccccCC---CCCcCEEEE
Confidence 4688999999999999999999987 36999999875 223344558999999998776532 368999999
Q ss_pred eCCCh-hHHHHHHHHHhccCCCCcEEEEEEcccccCCCCchhhh---HHHHHHHHHHCCCcEeEE-eecCCCCCceEEEE
Q 021911 220 DVAQP-DQARILALNASYFLKAGGHFVISIKANCIDSTVPAEAV---FQSEVKKLQQDQFKPFEQ-VTLEPFERDHACVV 294 (305)
Q Consensus 220 d~~~~-~~~~~l~~~a~~~LkpGG~lv~s~~~~~i~~~~~~~~v---~~~~~~~l~~~Gf~~~e~-~~l~p~~~~~~~vv 294 (305)
|+..+ .....+.......+... .+++..+... ......+ .....+.++..+|...-+ .++ -+.+....|.
T Consensus 277 Dm~~~p~~~~~l~~~wl~~~~~~-~aI~~lKL~m---k~~~~~l~~~~~~i~~~l~~~g~~~~l~akhL-~hdReEiTV~ 351 (375)
T 4auk_A 277 DMVEKPAKVAALMAQWLVNGWCR-ETIFNLKLPM---KKRYEEVSHNLAYIQAQLDEHGINAQIQARQL-YHDREEVTVH 351 (375)
T ss_dssp CCSSCHHHHHHHHHHHHHTTSCS-EEEEEEECCS---SSHHHHHHHHHHHHHHHHHHTTCCEEEEEECC-TTCSSEEEEE
T ss_pred cCCCChHHhHHHHHHHHhccccc-eEEEEEEecc---cchHHHHHHHHHHHHHHHHhcCcchhheehhh-ccCCcEEEEE
Confidence 99853 33222221333333333 3445443211 1111111 122235567788875322 233 2346666666
Q ss_pred EEEcCC
Q 021911 295 GGYRMP 300 (305)
Q Consensus 295 ~~~~~~ 300 (305)
..+..+
T Consensus 352 ~rk~~a 357 (375)
T 4auk_A 352 VRRIWA 357 (375)
T ss_dssp EEECCC
T ss_pred EEechh
Confidence 665444
|
| >2h1r_A Dimethyladenosine transferase, putative; SGC toronto dimethyladenosine transferase, structural genomics, structural genomics consortium; 1.89A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=98.97 E-value=3.2e-09 Score=96.45 Aligned_cols=83 Identities=16% Similarity=0.169 Sum_probs=61.8
Q ss_pred CCCCCCEEEEEecCCCccHHHHHhhhCCCcEEEEEeCChHHHHHHHHHHHcC--CCeEEEEccCCCCcccccCCCcEeEE
Q 021911 140 WIKPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKR--TNVIPIIEDARHPAKYRMLVGMVDVI 217 (305)
Q Consensus 140 ~~~~g~~VLDlG~G~G~~t~~la~~~~~~~~V~avD~s~~~~~~l~~~a~~~--~nI~~~~~D~~~~~~~~~~~~~fD~V 217 (305)
.+.++.+|||+|||+|.++..+++. ..+|++||+|+.++..+.+.++.. +++++++.|+...+ ..+||+|
T Consensus 39 ~~~~~~~VLDiG~G~G~lt~~La~~---~~~v~~vDi~~~~~~~a~~~~~~~~~~~v~~~~~D~~~~~-----~~~~D~V 110 (299)
T 2h1r_A 39 KIKSSDIVLEIGCGTGNLTVKLLPL---AKKVITIDIDSRMISEVKKRCLYEGYNNLEVYEGDAIKTV-----FPKFDVC 110 (299)
T ss_dssp CCCTTCEEEEECCTTSTTHHHHTTT---SSEEEEECSCHHHHHHHHHHHHHTTCCCEEC----CCSSC-----CCCCSEE
T ss_pred CCCCcCEEEEEcCcCcHHHHHHHhc---CCEEEEEECCHHHHHHHHHHHHHcCCCceEEEECchhhCC-----cccCCEE
Confidence 4678899999999999999999987 258999999997766666555432 68999999997754 2489999
Q ss_pred EEeCCChhHHHHH
Q 021911 218 FSDVAQPDQARIL 230 (305)
Q Consensus 218 ~~d~~~~~~~~~l 230 (305)
++|+|......++
T Consensus 111 v~n~py~~~~~~~ 123 (299)
T 2h1r_A 111 TANIPYKISSPLI 123 (299)
T ss_dssp EEECCGGGHHHHH
T ss_pred EEcCCcccccHHH
Confidence 9999965444444
|
| >3tqs_A Ribosomal RNA small subunit methyltransferase A; protein synthesis; 1.98A {Coxiella burnetii} SCOP: c.66.1.0 | Back alignment and structure |
|---|
Probab=98.97 E-value=8.9e-09 Score=91.48 Aligned_cols=88 Identities=10% Similarity=0.023 Sum_probs=67.7
Q ss_pred CCCCCCEEEEEecCCCccHHHHHhhhCCCcEEEEEeCChHHHHHHHHHHHcCCCeEEEEccCCCCcccccC-CCcEeEEE
Q 021911 140 WIKPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKRTNVIPIIEDARHPAKYRML-VGMVDVIF 218 (305)
Q Consensus 140 ~~~~g~~VLDlG~G~G~~t~~la~~~~~~~~V~avD~s~~~~~~l~~~a~~~~nI~~~~~D~~~~~~~~~~-~~~fD~V~ 218 (305)
.+.++.+|||+|||+|.+|..+++.. .+|++||+|+.++..+.+.+...++++++++|+.+.+..... ..+|| |+
T Consensus 26 ~~~~~~~VLEIG~G~G~lt~~La~~~---~~V~avEid~~~~~~~~~~~~~~~~v~~i~~D~~~~~~~~~~~~~~~~-vv 101 (255)
T 3tqs_A 26 HPQKTDTLVEIGPGRGALTDYLLTEC---DNLALVEIDRDLVAFLQKKYNQQKNITIYQNDALQFDFSSVKTDKPLR-VV 101 (255)
T ss_dssp CCCTTCEEEEECCTTTTTHHHHTTTS---SEEEEEECCHHHHHHHHHHHTTCTTEEEEESCTTTCCGGGSCCSSCEE-EE
T ss_pred CCCCcCEEEEEcccccHHHHHHHHhC---CEEEEEECCHHHHHHHHHHHhhCCCcEEEEcchHhCCHHHhccCCCeE-EE
Confidence 57788999999999999999999873 589999999966665555554447899999999887533211 35788 99
Q ss_pred EeCCChhHHHHHH
Q 021911 219 SDVAQPDQARILA 231 (305)
Q Consensus 219 ~d~~~~~~~~~l~ 231 (305)
+|+|......++.
T Consensus 102 ~NlPY~is~~il~ 114 (255)
T 3tqs_A 102 GNLPYNISTPLLF 114 (255)
T ss_dssp EECCHHHHHHHHH
T ss_pred ecCCcccCHHHHH
Confidence 9999655555555
|
| >3giw_A Protein of unknown function DUF574; rossmann-fold protein, structural genomics, joint center for structural genomics, JCSG; HET: MSE UNL; 1.45A {Streptomyces avermitilis} PDB: 3go4_A* | Back alignment and structure |
|---|
Probab=98.97 E-value=5.1e-09 Score=93.73 Aligned_cols=101 Identities=17% Similarity=0.169 Sum_probs=71.9
Q ss_pred CCEEEEEecCC--CccHHHHHhhhCCCcEEEEEeCChHHHHHHHHHHHcC------CCeEEEEccCCCCccc---ccCCC
Q 021911 144 GARVLYLGAAS--GTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKR------TNVIPIIEDARHPAKY---RMLVG 212 (305)
Q Consensus 144 g~~VLDlG~G~--G~~t~~la~~~~~~~~V~avD~s~~~~~~l~~~a~~~------~nI~~~~~D~~~~~~~---~~~~~ 212 (305)
-.+|||||||+ +..+..++..+.+..+|++||.|+ .|++.++.+ .++.++++|++++... .....
T Consensus 79 ~~q~LDLGcG~pT~~~~~~la~~~~P~arVv~VD~sp----~mLa~Ar~~l~~~~~~~~~~v~aD~~~~~~~l~~~~~~~ 154 (277)
T 3giw_A 79 IRQFLDIGTGIPTSPNLHEIAQSVAPESRVVYVDNDP----IVLTLSQGLLASTPEGRTAYVEADMLDPASILDAPELRD 154 (277)
T ss_dssp CCEEEEESCCSCCSSCHHHHHHHHCTTCEEEEEECCH----HHHHTTHHHHCCCSSSEEEEEECCTTCHHHHHTCHHHHT
T ss_pred CCEEEEeCCCCCcccHHHHHHHHHCCCCEEEEEeCCh----HHHHHHHHHhccCCCCcEEEEEecccChhhhhccccccc
Confidence 37999999997 456777777766888999999999 555554432 3699999999886321 00012
Q ss_pred cEe-----EEEEeCC---Chh---HHHHHHHHHhccCCCCcEEEEEEc
Q 021911 213 MVD-----VIFSDVA---QPD---QARILALNASYFLKAGGHFVISIK 249 (305)
Q Consensus 213 ~fD-----~V~~d~~---~~~---~~~~l~~~a~~~LkpGG~lv~s~~ 249 (305)
.|| +|+++.. .++ +..++. ++.+.|+|||+|++++.
T Consensus 155 ~~D~~~p~av~~~avLH~l~d~~~p~~~l~-~l~~~L~PGG~Lvls~~ 201 (277)
T 3giw_A 155 TLDLTRPVALTVIAIVHFVLDEDDAVGIVR-RLLEPLPSGSYLAMSIG 201 (277)
T ss_dssp TCCTTSCCEEEEESCGGGSCGGGCHHHHHH-HHHTTSCTTCEEEEEEE
T ss_pred ccCcCCcchHHhhhhHhcCCchhhHHHHHH-HHHHhCCCCcEEEEEec
Confidence 333 4666555 223 456776 99999999999999984
|
| >3gru_A Dimethyladenosine transferase; rossman fold, ribosomal assem adenosyl-L-methionine, rRNA, methyltransferase, RNA-binding processing; HET: AMP; 1.60A {Methanocaldococcus jannaschii} PDB: 3grr_A* 3grv_A* 3gry_A* 3fyd_A 3fyc_A* | Back alignment and structure |
|---|
Probab=98.95 E-value=8e-09 Score=93.67 Aligned_cols=96 Identities=13% Similarity=0.093 Sum_probs=73.4
Q ss_pred HHHHHHHccccccCCCCCCEEEEEecCCCccHHHHHhhhCCCcEEEEEeCChHHHHHHHHHHHcCCCeEEEEccCCCCcc
Q 021911 127 KLAAAVLGGVDNIWIKPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKRTNVIPIIEDARHPAK 206 (305)
Q Consensus 127 ~l~a~ll~~l~~~~~~~g~~VLDlG~G~G~~t~~la~~~~~~~~V~avD~s~~~~~~l~~~a~~~~nI~~~~~D~~~~~~ 206 (305)
.++..++..+ .+.++.+|||+|||+|.++..+++.. .+|++||+|+..+..+.+.+...+|++++++|+.+.+.
T Consensus 37 ~i~~~Iv~~l---~~~~~~~VLEIG~G~G~lT~~La~~~---~~V~aVEid~~li~~a~~~~~~~~~v~vi~gD~l~~~~ 110 (295)
T 3gru_A 37 NFVNKAVESA---NLTKDDVVLEIGLGKGILTEELAKNA---KKVYVIEIDKSLEPYANKLKELYNNIEIIWGDALKVDL 110 (295)
T ss_dssp HHHHHHHHHT---TCCTTCEEEEECCTTSHHHHHHHHHS---SEEEEEESCGGGHHHHHHHHHHCSSEEEEESCTTTSCG
T ss_pred HHHHHHHHhc---CCCCcCEEEEECCCchHHHHHHHhcC---CEEEEEECCHHHHHHHHHHhccCCCeEEEECchhhCCc
Confidence 3444554333 57788999999999999999999982 58999999997666666655545799999999987643
Q ss_pred cccCCCcEeEEEEeCCChhHHHHHH
Q 021911 207 YRMLVGMVDVIFSDVAQPDQARILA 231 (305)
Q Consensus 207 ~~~~~~~fD~V~~d~~~~~~~~~l~ 231 (305)
. ...||+|++|+|......++.
T Consensus 111 ~---~~~fD~Iv~NlPy~is~pil~ 132 (295)
T 3gru_A 111 N---KLDFNKVVANLPYQISSPITF 132 (295)
T ss_dssp G---GSCCSEEEEECCGGGHHHHHH
T ss_pred c---cCCccEEEEeCcccccHHHHH
Confidence 2 247999999999665555555
|
| >3gcz_A Polyprotein; flavivirus, RNA capping, methyltransferase, viral enzyme STR ATP-binding, nucleotide-binding, RNA replication, structura genomics; HET: SAM; 1.70A {Yokose virus} | Back alignment and structure |
|---|
Probab=98.94 E-value=2.6e-10 Score=101.55 Aligned_cols=116 Identities=20% Similarity=0.195 Sum_probs=81.5
Q ss_pred hhhHHHHHHHccccccCCCCCCEEEEEecCCCccHHHHHhhhCCCcEEEEEeCChHHHHHHHHHHHc----CCCeEEEEc
Q 021911 124 FRSKLAAAVLGGVDNIWIKPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKK----RTNVIPIIE 199 (305)
Q Consensus 124 ~~s~l~a~ll~~l~~~~~~~g~~VLDlG~G~G~~t~~la~~~~~~~~V~avD~s~~~~~~l~~~a~~----~~nI~~~~~ 199 (305)
|+|..+..|++..++..++++.+|||||||+|.++..+++.. +...|+++|++. ++...+.. ..++..+..
T Consensus 71 YrSRAAfKL~ei~eK~~Lk~~~~VLDLGaAPGGWsQvAa~~~-gv~sV~GvdvG~----d~~~~pi~~~~~g~~ii~~~~ 145 (282)
T 3gcz_A 71 AVSRGSAKLRWMEERGYVKPTGIVVDLGCGRGGWSYYAASLK-NVKKVMAFTLGV----QGHEKPIMRTTLGWNLIRFKD 145 (282)
T ss_dssp CSSTHHHHHHHHHHTTSCCCCEEEEEETCTTCHHHHHHHTST-TEEEEEEECCCC----TTSCCCCCCCBTTGGGEEEEC
T ss_pred EecHHHHHHHHHHHhcCCCCCCEEEEeCCCCCHHHHHHHHhc-CCCeeeeEEecc----CccccccccccCCCceEEeeC
Confidence 478888888887777788999999999999999999999764 445799999986 22111111 124554544
Q ss_pred cCCCCcccccCCCcEeEEEEeCCCh------hHHH---HHHHHHhccCCCC--cEEEEEE
Q 021911 200 DARHPAKYRMLVGMVDVIFSDVAQP------DQAR---ILALNASYFLKAG--GHFVISI 248 (305)
Q Consensus 200 D~~~~~~~~~~~~~fD~V~~d~~~~------~~~~---~l~~~a~~~LkpG--G~lv~s~ 248 (305)
++... .+...++|+|+||++.. |+.+ +|. -|.++|||| |.|++-+
T Consensus 146 ~~dv~---~l~~~~~DvVLSDmApnsG~~~~D~~rs~~LL~-~A~~~Lk~g~~G~Fv~Kv 201 (282)
T 3gcz_A 146 KTDVF---NMEVIPGDTLLCDIGESSPSIAVEEQRTLRVLN-CAKQWLQEGNYTEFCIKV 201 (282)
T ss_dssp SCCGG---GSCCCCCSEEEECCCCCCSCHHHHHHHHHHHHH-HHHHHHHHHCCCEEEEEE
T ss_pred Ccchh---hcCCCCcCEEEecCccCCCChHHHHHHHHHHHH-HHHHHcCCCCCCcEEEEE
Confidence 33211 12357899999999832 4333 333 678899999 9999987
|
| >2okc_A Type I restriction enzyme stysji M protein; NP_813429.1, N-6 DNA methylase, type I restriction enzyme ST protein; HET: SAM; 2.20A {Bacteroides thetaiotaomicron vpi-5482} SCOP: c.66.1.45 | Back alignment and structure |
|---|
Probab=98.92 E-value=3e-09 Score=101.80 Aligned_cols=106 Identities=16% Similarity=0.116 Sum_probs=77.4
Q ss_pred CCCCCCEEEEEecCCCccHHHHHhhhC------------CCcEEEEEeCChHHHHHHHHHHHcC--C--CeEEEEccCCC
Q 021911 140 WIKPGARVLYLGAASGTTVSHVSDIVG------------PNGVVYAVEFSHRSGRDLVNMAKKR--T--NVIPIIEDARH 203 (305)
Q Consensus 140 ~~~~g~~VLDlG~G~G~~t~~la~~~~------------~~~~V~avD~s~~~~~~l~~~a~~~--~--nI~~~~~D~~~ 203 (305)
.+.++.+|||+|||+|.++..+++.+. ...+++++|+++.+++-+...+... . ++.+++.|+..
T Consensus 168 ~~~~~~~VlDpacGsG~fl~~~~~~l~~~~~~~~~~~~~~~~~i~G~Ei~~~~~~lA~~nl~l~g~~~~~~~i~~gD~l~ 247 (445)
T 2okc_A 168 NPQMGETVCDPACGTGGFLLTAYDYMKGQSASKEKRDFLRDKALHGVDNTPLVVTLASMNLYLHGIGTDRSPIVCEDSLE 247 (445)
T ss_dssp CCCTTCCEEETTCTTCHHHHHHHHHHHTCC-CCHHHHHHHHTTEEEEESCHHHHHHHHHHHHHTTCCSSCCSEEECCTTT
T ss_pred CCCCCCEEeccCCCcchHHHHHHHHHHHhcCCHHHHHhhcCeEEEEEeCCHHHHHHHHHHHHHhCCCcCCCCEeeCCCCC
Confidence 466788999999999999999988652 1247999999995544433332222 2 67788999876
Q ss_pred CcccccCCCcEeEEEEeCCCh--------------------hHHHHHHHHHhccCCCCcEEEEEEcc
Q 021911 204 PAKYRMLVGMVDVIFSDVAQP--------------------DQARILALNASYFLKAGGHFVISIKA 250 (305)
Q Consensus 204 ~~~~~~~~~~fD~V~~d~~~~--------------------~~~~~l~~~a~~~LkpGG~lv~s~~~ 250 (305)
.+. ...||+|++|+|.. .+...+. ++.++|||+|++++.++.
T Consensus 248 ~~~----~~~fD~Iv~NPPf~~~~~~~~~~~~~~~~~~~~~~~~~fl~-~~~~~Lk~gG~~a~V~p~ 309 (445)
T 2okc_A 248 KEP----STLVDVILANPPFGTRPAGSVDINRPDFYVETKNNQLNFLQ-HMMLMLKTGGRAAVVLPD 309 (445)
T ss_dssp SCC----SSCEEEEEECCCSSCCCTTCCCCCCTTSSSCCSCHHHHHHH-HHHHHEEEEEEEEEEEEH
T ss_pred Ccc----cCCcCEEEECCCCCCcccccchhhHhhcCCCCcchHHHHHH-HHHHHhccCCEEEEEECC
Confidence 542 24899999999821 1234555 899999999999999843
|
| >3p8z_A Mtase, non-structural protein 5; methyltransferase, RNA, ER, transferase-transferase inhibito; HET: 36A SAH; 1.70A {Dengue virus 3} SCOP: c.66.1.25 PDB: 3p97_A* 2xbm_A* 3evg_A* | Back alignment and structure |
|---|
Probab=98.86 E-value=1.5e-08 Score=87.59 Aligned_cols=116 Identities=17% Similarity=0.134 Sum_probs=81.9
Q ss_pred hhhHHHHHHHccccccCCCCCCEEEEEecCCCccHHHHHhhhCCCcEEEEEeCChHHHHHHHHHHHcC--CCeEEEEc-c
Q 021911 124 FRSKLAAAVLGGVDNIWIKPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKR--TNVIPIIE-D 200 (305)
Q Consensus 124 ~~s~l~a~ll~~l~~~~~~~g~~VLDlG~G~G~~t~~la~~~~~~~~V~avD~s~~~~~~l~~~a~~~--~nI~~~~~-D 200 (305)
|+|.-+..|....++..++++.+||||||++|.++..++...+. ..|+|+|+-..-. +.-.+.+.. ..|+|++. |
T Consensus 59 yrSRa~~KL~ei~ek~~l~~g~~VvDLGaapGGWSq~~a~~~g~-~~V~avdvG~~gh-e~P~~~~s~gwn~v~fk~gvD 136 (267)
T 3p8z_A 59 AVSRGSAKLQWFVERNMVIPEGRVIDLGCGRGGWSYYCAGLKKV-TEVRGYTKGGPGH-EEPVPMSTYGWNIVKLMSGKD 136 (267)
T ss_dssp CSSTHHHHHHHHHHTTSSCCCEEEEEESCTTSHHHHHHHTSTTE-EEEEEECCCSTTS-CCCCCCCCTTTTSEEEECSCC
T ss_pred ccchHHHHHHHHHHhcCCCCCCEEEEcCCCCCcHHHHHHHhcCC-CEEEEEecCCCCc-cCcchhhhcCcCceEEEeccc
Confidence 47788888877777778899999999999999999999988653 3899999975110 000000111 56889988 8
Q ss_pred CCCCcccccCCCcEeEEEEeCCC------hhHHH---HHHHHHhccCCCCcEEEEEE
Q 021911 201 ARHPAKYRMLVGMVDVIFSDVAQ------PDQAR---ILALNASYFLKAGGHFVISI 248 (305)
Q Consensus 201 ~~~~~~~~~~~~~fD~V~~d~~~------~~~~~---~l~~~a~~~LkpGG~lv~s~ 248 (305)
+.... ..++|+|+||+.. .++.+ +|. -+.++|++ +.|++-+
T Consensus 137 v~~~~-----~~~~DtllcDIgeSs~~~~vE~~RtlrvLe-la~~wL~~-~~fc~KV 186 (267)
T 3p8z_A 137 VFYLP-----PEKCDTLLCDIGESSPSPTVEESRTIRVLK-MVEPWLKN-NQFCIKV 186 (267)
T ss_dssp GGGCC-----CCCCSEEEECCCCCCSCHHHHHHHHHHHHH-HHGGGCSS-CEEEEEE
T ss_pred eeecC-----CccccEEEEecCCCCCChhhhhhHHHHHHH-HHHHhccc-CCEEEEE
Confidence 75443 3579999999972 13433 333 56789999 6777755
|
| >1qam_A ERMC' methyltransferase; rRNA methyltransferase ERMC', cofactor analogs; 2.20A {Bacillus subtilis} SCOP: c.66.1.24 PDB: 1qan_A* 1qao_A* 1qaq_A* 2erc_A | Back alignment and structure |
|---|
Probab=98.84 E-value=4.1e-08 Score=86.45 Aligned_cols=105 Identities=12% Similarity=0.118 Sum_probs=73.2
Q ss_pred HHHHHHHccccccCCCCCCEEEEEecCCCccHHHHHhhhCCCcEEEEEeCChHHHHHHHHHHHcCCCeEEEEccCCCCcc
Q 021911 127 KLAAAVLGGVDNIWIKPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKRTNVIPIIEDARHPAK 206 (305)
Q Consensus 127 ~l~a~ll~~l~~~~~~~g~~VLDlG~G~G~~t~~la~~~~~~~~V~avD~s~~~~~~l~~~a~~~~nI~~~~~D~~~~~~ 206 (305)
.+...++..+ .+.++.+|||+|||+|.++..+++.. .+|++||+|+.++..+.+..+..+++++++.|+.+.+.
T Consensus 17 ~~~~~i~~~~---~~~~~~~VLDiG~G~G~lt~~l~~~~---~~v~~vD~~~~~~~~a~~~~~~~~~v~~~~~D~~~~~~ 90 (244)
T 1qam_A 17 HNIDKIMTNI---RLNEHDNIFEIGSGKGHFTLELVQRC---NFVTAIEIDHKLCKTTENKLVDHDNFQVLNKDILQFKF 90 (244)
T ss_dssp HHHHHHHTTC---CCCTTCEEEEECCTTSHHHHHHHHHS---SEEEEECSCHHHHHHHHHHTTTCCSEEEECCCGGGCCC
T ss_pred HHHHHHHHhC---CCCCCCEEEEEeCCchHHHHHHHHcC---CeEEEEECCHHHHHHHHHhhccCCCeEEEEChHHhCCc
Confidence 4555665433 46778999999999999999999984 58999999996655555444433689999999977642
Q ss_pred cccCCCcEeEEEEeCCChhHHHHHHHHHhccCCCC
Q 021911 207 YRMLVGMVDVIFSDVAQPDQARILALNASYFLKAG 241 (305)
Q Consensus 207 ~~~~~~~fD~V~~d~~~~~~~~~l~~~a~~~LkpG 241 (305)
. ....| .|++|+|......++. ++.......
T Consensus 91 ~--~~~~~-~vv~nlPy~~~~~~l~-~~l~~~~~~ 121 (244)
T 1qam_A 91 P--KNQSY-KIFGNIPYNISTDIIR-KIVFDSIAD 121 (244)
T ss_dssp C--SSCCC-EEEEECCGGGHHHHHH-HHHHSCCCS
T ss_pred c--cCCCe-EEEEeCCcccCHHHHH-HHHhcCCCC
Confidence 1 11345 6889999665555555 444333333
|
| >2ar0_A M.ecoki, type I restriction enzyme ecoki M protein; structural genomics, protein structure initiative, nysgxrc; 2.80A {Escherichia coli} SCOP: c.66.1.45 PDB: 2y7c_B 2y7h_B* | Back alignment and structure |
|---|
Probab=98.83 E-value=9.9e-09 Score=100.59 Aligned_cols=108 Identities=9% Similarity=0.024 Sum_probs=76.9
Q ss_pred CCCCCCEEEEEecCCCccHHHHHhhhCC-----------------CcEEEEEeCChHHHHHHHHHHHcC--CC-----eE
Q 021911 140 WIKPGARVLYLGAASGTTVSHVSDIVGP-----------------NGVVYAVEFSHRSGRDLVNMAKKR--TN-----VI 195 (305)
Q Consensus 140 ~~~~g~~VLDlG~G~G~~t~~la~~~~~-----------------~~~V~avD~s~~~~~~l~~~a~~~--~n-----I~ 195 (305)
.+.++.+|||.|||+|.++..+++.+.. ..+++++|+++.+++-+...+... .+ +.
T Consensus 166 ~p~~~~~VlDPaCGSG~fLi~a~~~l~~~~~~~~~~~~~~~~~~~~~~i~GiEid~~~~~lA~~nl~l~gi~~~~~~~~~ 245 (541)
T 2ar0_A 166 KPQPREVVQDPAAGTAGFLIEADRYVKSQTNDLDDLDGDTQDFQIHRAFIGLELVPGTRRLALMNCLLHDIEGNLDHGGA 245 (541)
T ss_dssp CCCTTCCEEETTCTTTHHHHHHHHHHHTTTTTTTTSCHHHHHHHHHTSEEEEESCHHHHHHHHHHHHTTTCCCBGGGTBS
T ss_pred ccCCCCeEecCCcccchHHHHHHHHHHHhhcccccCCHHHHhhhhcceEEEEcCCHHHHHHHHHHHHHhCCCccccccCC
Confidence 4677899999999999999999876532 137999999995544333222222 33 67
Q ss_pred EEEccCCCCcccccCCCcEeEEEEeCCCh----------------h-HHHHHHHHHhccCCCCcEEEEEEcc
Q 021911 196 PIIEDARHPAKYRMLVGMVDVIFSDVAQP----------------D-QARILALNASYFLKAGGHFVISIKA 250 (305)
Q Consensus 196 ~~~~D~~~~~~~~~~~~~fD~V~~d~~~~----------------~-~~~~l~~~a~~~LkpGG~lv~s~~~ 250 (305)
+++.|....+.. ....||+|++|+|.. + +...+. ++.++|||+|++++.++.
T Consensus 246 I~~gDtL~~~~~--~~~~fD~Vv~NPPf~~~~~~~~~~~~~~~~~~~~~~Fl~-~~l~~Lk~gGr~a~V~p~ 314 (541)
T 2ar0_A 246 IRLGNTLGSDGE--NLPKAHIVATNPPFGSAAGTNITRTFVHPTSNKQLCFMQ-HIIETLHPGGRAAVVVPD 314 (541)
T ss_dssp EEESCTTSHHHH--TSCCEEEEEECCCCTTCSSCCCCSCCSSCCSCHHHHHHH-HHHHHEEEEEEEEEEEEH
T ss_pred eEeCCCcccccc--cccCCeEEEECCCcccccchhhHhhcCCCCCchHHHHHH-HHHHHhCCCCEEEEEecC
Confidence 888898654322 236899999999921 1 234444 899999999999999843
|
| >3o4f_A Spermidine synthase; aminopropyltransferase, polyamine synthase, rossmann fold, P biosynthesis, spermidine biosynthesis, transferase; 2.90A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.82 E-value=1.4e-07 Score=85.17 Aligned_cols=146 Identities=16% Similarity=0.125 Sum_probs=99.4
Q ss_pred CCEEEEEecCCCccHHHHHhhhCCCcEEEEEeCChHHHHHHHHHHH-------cCCCeEEEEccCCCCcccccCCCcEeE
Q 021911 144 GARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAK-------KRTNVIPIIEDARHPAKYRMLVGMVDV 216 (305)
Q Consensus 144 g~~VLDlG~G~G~~t~~la~~~~~~~~V~avD~s~~~~~~l~~~a~-------~~~nI~~~~~D~~~~~~~~~~~~~fD~ 216 (305)
..+||-||.|.|..+..+++.. +-.+|+.||+++..++-+.+... ..+++++++.|+...... ...+||+
T Consensus 84 pk~VLIiGgGdG~~~revlk~~-~v~~v~~VEID~~Vv~~a~~~lp~~~~~~~~dpRv~v~~~Dg~~~l~~--~~~~yDv 160 (294)
T 3o4f_A 84 AKHVLIIGGGDGAMLREVTRHK-NVESITMVEIDAGVVSFCRQYLPNHNAGSYDDPRFKLVIDDGVNFVNQ--TSQTFDV 160 (294)
T ss_dssp CCEEEEESCTTSHHHHHHHTCT-TCCEEEEEESCHHHHHHHHHHCHHHHTTGGGCTTEEEEESCTTTTTSC--SSCCEEE
T ss_pred CCeEEEECCCchHHHHHHHHcC-CcceEEEEcCCHHHHHHHHhcCccccccccCCCcEEEEechHHHHHhh--ccccCCE
Confidence 4899999999999999999874 34589999999955443333321 227899999999887543 3579999
Q ss_pred EEEeCCCh-------hHHHHHHHHHhccCCCCcEEEEEEcccccCCCCchhhhHHHHHHHHHHCCCcEeEEe--ecCCCC
Q 021911 217 IFSDVAQP-------DQARILALNASYFLKAGGHFVISIKANCIDSTVPAEAVFQSEVKKLQQDQFKPFEQV--TLEPFE 287 (305)
Q Consensus 217 V~~d~~~~-------~~~~~l~~~a~~~LkpGG~lv~s~~~~~i~~~~~~~~v~~~~~~~l~~~Gf~~~e~~--~l~p~~ 287 (305)
|++|.+.| -..+.+. .+++.|+|+|.|+... .+.... ...+....+.+++. |...... .+..|.
T Consensus 161 Ii~D~~dp~~~~~~L~t~eFy~-~~~~~L~p~Gv~v~q~--~sp~~~---~~~~~~~~~~l~~~-F~~v~~~~~~vPty~ 233 (294)
T 3o4f_A 161 IISDCTDPIGPGESLFTSAFYE-GCKRCLNPGGIFVAQN--GVCFLQ---QEEAIDSHRKLSHY-FSDVGFYQAAIPTYY 233 (294)
T ss_dssp EEESCCCCCCTTCCSSCCHHHH-HHHHTEEEEEEEEEEE--EESSSC---CHHHHHHHHHHHHH-CSEEEEEEECCTTSS
T ss_pred EEEeCCCcCCCchhhcCHHHHH-HHHHHhCCCCEEEEec--CCcccC---hHHHHHHHHHHHhh-CCceeeeeeeeccCC
Confidence 99998743 1345555 8899999999999875 222221 12334445666655 6665543 344453
Q ss_pred -CceEEEEEEEcC
Q 021911 288 -RDHACVVGGYRM 299 (305)
Q Consensus 288 -~~~~~vv~~~~~ 299 (305)
..+.++++.+..
T Consensus 234 ~g~w~f~~as~~~ 246 (294)
T 3o4f_A 234 GGIMTFAWATDND 246 (294)
T ss_dssp SSCEEEEEEESCT
T ss_pred CcceeheeEECCC
Confidence 456677777653
|
| >3uzu_A Ribosomal RNA small subunit methyltransferase A; ssgcid, seattle structural genomics center for infectio disease; 1.75A {Burkholderia pseudomallei} | Back alignment and structure |
|---|
Probab=98.79 E-value=6.4e-08 Score=87.02 Aligned_cols=90 Identities=16% Similarity=0.043 Sum_probs=66.9
Q ss_pred CCCCCCEEEEEecCCCccHHHHHhhhCC-CcEEEEEeCChHHHHHHHHHHHcCCCeEEEEccCCCCcccccCC-C--cEe
Q 021911 140 WIKPGARVLYLGAASGTTVSHVSDIVGP-NGVVYAVEFSHRSGRDLVNMAKKRTNVIPIIEDARHPAKYRMLV-G--MVD 215 (305)
Q Consensus 140 ~~~~g~~VLDlG~G~G~~t~~la~~~~~-~~~V~avD~s~~~~~~l~~~a~~~~nI~~~~~D~~~~~~~~~~~-~--~fD 215 (305)
.+.++.+|||+|||+|.++..|++.... .++|++||+|+.++..+.+.. ..++++++.|+.+.+...... . ..+
T Consensus 39 ~~~~~~~VLEIG~G~G~lt~~La~~~~~~~~~V~avDid~~~l~~a~~~~--~~~v~~i~~D~~~~~~~~~~~~~~~~~~ 116 (279)
T 3uzu_A 39 RPERGERMVEIGPGLGALTGPVIARLATPGSPLHAVELDRDLIGRLEQRF--GELLELHAGDALTFDFGSIARPGDEPSL 116 (279)
T ss_dssp CCCTTCEEEEECCTTSTTHHHHHHHHCBTTBCEEEEECCHHHHHHHHHHH--GGGEEEEESCGGGCCGGGGSCSSSSCCE
T ss_pred CCCCcCEEEEEccccHHHHHHHHHhCCCcCCeEEEEECCHHHHHHHHHhc--CCCcEEEECChhcCChhHhcccccCCce
Confidence 5678899999999999999999998643 245999999995555444442 368999999998765332211 1 346
Q ss_pred EEEEeCCChhHHHHHH
Q 021911 216 VIFSDVAQPDQARILA 231 (305)
Q Consensus 216 ~V~~d~~~~~~~~~l~ 231 (305)
.|++|+|......++.
T Consensus 117 ~vv~NlPY~iss~il~ 132 (279)
T 3uzu_A 117 RIIGNLPYNISSPLLF 132 (279)
T ss_dssp EEEEECCHHHHHHHHH
T ss_pred EEEEccCccccHHHHH
Confidence 8999999776666666
|
| >3v97_A Ribosomal RNA large subunit methyltransferase L; YCBY, RNA methyltransferase, ribosome RNA, SAH, RLML; HET: SAH OSU; 2.20A {Escherichia coli} PDB: 3v8v_A* | Back alignment and structure |
|---|
Probab=98.78 E-value=2.8e-08 Score=100.25 Aligned_cols=122 Identities=16% Similarity=0.143 Sum_probs=85.5
Q ss_pred CchhhHHHHHHHccccccCCCCCCEEEEEecCCCccHHHHHhhhC-----------------------------------
Q 021911 122 NPFRSKLAAAVLGGVDNIWIKPGARVLYLGAASGTTVSHVSDIVG----------------------------------- 166 (305)
Q Consensus 122 ~~~~s~l~a~ll~~l~~~~~~~g~~VLDlG~G~G~~t~~la~~~~----------------------------------- 166 (305)
.|....|++.++... ..+++..|||.+||+|++++.+|.+..
T Consensus 172 apl~e~LAa~ll~~~---~~~~~~~llDP~CGSGt~lIeAa~~a~~~apG~~R~~f~fe~w~~~~~~~w~~~~~ea~~~~ 248 (703)
T 3v97_A 172 APIKETLAAAIVMRS---GWQPGTPLLDPMCGSGTLLIEAAMLATDRAPGLHRGRWGFSGWAQHDEAIWQEVKAEAQTRA 248 (703)
T ss_dssp CSSCHHHHHHHHHHT---TCCTTSCEEETTCTTSHHHHHHHHHHTTCCTTTTCCCCTTTTBTTCCHHHHHHHHHHHHHHH
T ss_pred CCCcHHHHHHHHHhh---CCCCCCeEEecCCCCcHHHHHHHHHHhhcCCCCCccccchhhcccCCHHHHHHHHHHHHHHh
Confidence 356778888876533 356788999999999999999887631
Q ss_pred ------CCcEEEEEeCChHHHHHHHHHHHcC---CCeEEEEccCCCCcccccCCCcEeEEEEeCCC-------hhH---H
Q 021911 167 ------PNGVVYAVEFSHRSGRDLVNMAKKR---TNVIPIIEDARHPAKYRMLVGMVDVIFSDVAQ-------PDQ---A 227 (305)
Q Consensus 167 ------~~~~V~avD~s~~~~~~l~~~a~~~---~nI~~~~~D~~~~~~~~~~~~~fD~V~~d~~~-------~~~---~ 227 (305)
+...|+++|+++.+++.+..+++.. ..|.+.+.|+.+.... ...+.||+|++|+|. .+. .
T Consensus 249 ~~~~~~~~~~i~G~Did~~av~~A~~N~~~agv~~~i~~~~~D~~~~~~~-~~~~~~d~Iv~NPPYG~Rlg~~~~l~~ly 327 (703)
T 3v97_A 249 RKGLAEYSSHFYGSDSDARVIQRARTNARLAGIGELITFEVKDVAQLTNP-LPKGPYGTVLSNPPYGERLDSEPALIALH 327 (703)
T ss_dssp HHHHHHCCCCEEEEESCHHHHHHHHHHHHHTTCGGGEEEEECCGGGCCCS-CTTCCCCEEEECCCCCC---CCHHHHHHH
T ss_pred hhccccCCccEEEEECCHHHHHHHHHHHHHcCCCCceEEEECChhhCccc-cccCCCCEEEeCCCccccccchhHHHHHH
Confidence 1257999999997766666665544 3489999999775321 112389999999992 121 2
Q ss_pred HHHHHHHhccCCCCcEEEEEE
Q 021911 228 RILALNASYFLKAGGHFVISI 248 (305)
Q Consensus 228 ~~l~~~a~~~LkpGG~lv~s~ 248 (305)
+.+. .+.+.+.||+.+++.+
T Consensus 328 ~~l~-~~lk~~~~g~~~~ilt 347 (703)
T 3v97_A 328 SLLG-RIMKNQFGGWNLSLFS 347 (703)
T ss_dssp HHHH-HHHHHHCTTCEEEEEE
T ss_pred HHHH-HHHHhhCCCCeEEEEe
Confidence 2233 3445566899999876
|
| >1yub_A Ermam, rRNA methyltransferase; MLS antibiotics; NMR {Streptococcus pneumoniae} SCOP: c.66.1.24 | Back alignment and structure |
|---|
Probab=98.77 E-value=4e-10 Score=99.30 Aligned_cols=99 Identities=15% Similarity=0.121 Sum_probs=70.6
Q ss_pred CCCCCCEEEEEecCCCccHHHHHhhhCCCcEEEEEeCChHHHHHHHHHHHcC----CCeEEEEccCCCCcccccCCCcEe
Q 021911 140 WIKPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKR----TNVIPIIEDARHPAKYRMLVGMVD 215 (305)
Q Consensus 140 ~~~~g~~VLDlG~G~G~~t~~la~~~~~~~~V~avD~s~~~~~~l~~~a~~~----~nI~~~~~D~~~~~~~~~~~~~fD 215 (305)
.+.++.+|||+|||+|.++..+++.. .+|+++|+|+ .+++.++++ +++++++.|+.+.+.. ...+|
T Consensus 26 ~~~~~~~VLDiG~G~G~~~~~l~~~~---~~v~~id~~~----~~~~~a~~~~~~~~~v~~~~~D~~~~~~~--~~~~f- 95 (245)
T 1yub_A 26 NLKETDTVYEIGTGKGHLTTKLAKIS---KQVTSIELDS----HLFNLSSEKLKLNTRVTLIHQDILQFQFP--NKQRY- 95 (245)
T ss_dssp CCCSSEEEEECSCCCSSCSHHHHHHS---SEEEESSSSC----SSSSSSSCTTTTCSEEEECCSCCTTTTCC--CSSEE-
T ss_pred CCCCCCEEEEEeCCCCHHHHHHHHhC---CeEEEEECCH----HHHHHHHHHhccCCceEEEECChhhcCcc--cCCCc-
Confidence 46788999999999999999999983 5899999999 555555443 5799999999876421 12578
Q ss_pred EEEEeCCChh----HHHHHH-------------HHHhccCCCCcEEEEEE
Q 021911 216 VIFSDVAQPD----QARILA-------------LNASYFLKAGGHFVISI 248 (305)
Q Consensus 216 ~V~~d~~~~~----~~~~l~-------------~~a~~~LkpGG~lv~s~ 248 (305)
.|++|+|... ...++. ..+.++|||+|.|++.+
T Consensus 96 ~vv~n~Py~~~~~~~~~~~~~~~~~~~~lm~q~e~a~rll~~~G~l~v~~ 145 (245)
T 1yub_A 96 KIVGNIPYHLSTQIIKKVVFESRASDIYLIVEEGFYKRTLDIHRTLGLLL 145 (245)
T ss_dssp EEEEECCSSSCHHHHHHHHHHCCCEEEEEEEESSHHHHHHCGGGSHHHHT
T ss_pred EEEEeCCccccHHHHHHHHhCCCCCeEEEEeeHHHHHHHhCCCCchhhhh
Confidence 8899988322 112221 24667777777766554
|
| >1m6y_A S-adenosyl-methyltransferase MRAW; SAM-dependent methyltransferase fold, protein-cofactor product complex, structural genomics, PSI; HET: SAH; 1.90A {Thermotoga maritima} SCOP: a.60.13.1 c.66.1.23 PDB: 1n2x_A* | Back alignment and structure |
|---|
Probab=98.77 E-value=1.6e-08 Score=91.90 Aligned_cols=84 Identities=12% Similarity=0.022 Sum_probs=65.5
Q ss_pred CCCCCCEEEEEecCCCccHHHHHhhhCCCcEEEEEeCChHHHHHHHHHHHcC-CCeEEEEccCCCCccc-cc-CCCcEeE
Q 021911 140 WIKPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKR-TNVIPIIEDARHPAKY-RM-LVGMVDV 216 (305)
Q Consensus 140 ~~~~g~~VLDlG~G~G~~t~~la~~~~~~~~V~avD~s~~~~~~l~~~a~~~-~nI~~~~~D~~~~~~~-~~-~~~~fD~ 216 (305)
.++++.+|||+|||+|..+..+++.+. .++|++||+|+.++..+.+.++.. .++.+++.|+.+.+.. .. ...+||.
T Consensus 23 ~~~~g~~vLD~g~G~G~~s~~la~~~~-~~~VigvD~d~~al~~A~~~~~~~g~~v~~v~~d~~~l~~~l~~~g~~~~D~ 101 (301)
T 1m6y_A 23 KPEDEKIILDCTVGEGGHSRAILEHCP-GCRIIGIDVDSEVLRIAEEKLKEFSDRVSLFKVSYREADFLLKTLGIEKVDG 101 (301)
T ss_dssp CCCTTCEEEETTCTTSHHHHHHHHHCT-TCEEEEEESCHHHHHHHHHHTGGGTTTEEEEECCGGGHHHHHHHTTCSCEEE
T ss_pred CCCCCCEEEEEeCCcCHHHHHHHHHCC-CCEEEEEECCHHHHHHHHHHHHhcCCcEEEEECCHHHHHHHHHhcCCCCCCE
Confidence 477899999999999999999999863 679999999996666555555443 5899999998776421 10 1258999
Q ss_pred EEEeCCCh
Q 021911 217 IFSDVAQP 224 (305)
Q Consensus 217 V~~d~~~~ 224 (305)
|++|++..
T Consensus 102 Vl~D~gvS 109 (301)
T 1m6y_A 102 ILMDLGVS 109 (301)
T ss_dssp EEEECSCC
T ss_pred EEEcCccc
Confidence 99999854
|
| >3lcv_B Sisomicin-gentamicin resistance methylase SGM; antibiotic resistance, methyltransferase, transferase; HET: SAM; 2.00A {Micromonospora zionensis} PDB: 3lcu_A* | Back alignment and structure |
|---|
Probab=98.76 E-value=4.7e-08 Score=86.49 Aligned_cols=131 Identities=8% Similarity=-0.051 Sum_probs=84.9
Q ss_pred CCCCEEEEEecCCCccHHHHHhhhCCCcEEEEEeCChHHHHHHHHHHHcC-CCeEEEEccCCCCcccccCCCcEeEEEEe
Q 021911 142 KPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKR-TNVIPIIEDARHPAKYRMLVGMVDVIFSD 220 (305)
Q Consensus 142 ~~g~~VLDlG~G~G~~t~~la~~~~~~~~V~avD~s~~~~~~l~~~a~~~-~nI~~~~~D~~~~~~~~~~~~~fD~V~~d 220 (305)
.+..+|||||||+|-++..++... +..+|+++|+++++++-+.+++... .+..+.+.|..... +...||+|++.
T Consensus 131 ~~p~~VLDLGCG~GpLAl~~~~~~-p~a~y~a~DId~~~le~a~~~l~~~g~~~~~~v~D~~~~~----p~~~~DvaL~l 205 (281)
T 3lcv_B 131 PRPNTLRDLACGLNPLAAPWMGLP-AETVYIASDIDARLVGFVDEALTRLNVPHRTNVADLLEDR----LDEPADVTLLL 205 (281)
T ss_dssp CCCSEEEETTCTTGGGCCTTTTCC-TTCEEEEEESBHHHHHHHHHHHHHTTCCEEEEECCTTTSC----CCSCCSEEEET
T ss_pred CCCceeeeeccCccHHHHHHHhhC-CCCEEEEEeCCHHHHHHHHHHHHhcCCCceEEEeeecccC----CCCCcchHHHH
Confidence 446799999999999999998864 6789999999996665555555443 56788888886654 35789999997
Q ss_pred CCCh---hHH-HHHHHHHhccCCCCcEEEEEEcccccCCC-CchhhhHHHH-HHHHHHCCCcEeE
Q 021911 221 VAQP---DQA-RILALNASYFLKAGGHFVISIKANCIDST-VPAEAVFQSE-VKKLQQDQFKPFE 279 (305)
Q Consensus 221 ~~~~---~~~-~~l~~~a~~~LkpGG~lv~s~~~~~i~~~-~~~~~v~~~~-~~~l~~~Gf~~~e 279 (305)
...+ +|. .... ++.+.|+|++.+|-.- ..++... .-.+.-.... .+.+.+.|+.+.+
T Consensus 206 kti~~Le~q~kg~g~-~ll~aL~~~~vvVSfp-~ksl~Grs~gm~~~Y~~~~e~~~~~~g~~~~~ 268 (281)
T 3lcv_B 206 KTLPCLETQQRGSGW-EVIDIVNSPNIVVTFP-TKSLGQRSKGMFQNYSQSFESQARERSCRIQR 268 (281)
T ss_dssp TCHHHHHHHSTTHHH-HHHHHSSCSEEEEEEE-CC-------CHHHHHHHHHHHHHHHHTCCEEE
T ss_pred HHHHHhhhhhhHHHH-HHHHHhCCCCEEEecc-chhhcCCCcchhhHHHHHHHHHHHhcCCceee
Confidence 7733 222 2344 7888999996655432 2232222 2222222222 3445667885544
|
| >3ftd_A Dimethyladenosine transferase; KSGA, rossmann-like fold, RNA methyltransferase, mtase, anti resistance, methyltransferase, RNA-binding; 1.44A {Aquifex aeolicus} PDB: 3ftc_A 3fte_A 3ftf_A* 3r9x_B* | Back alignment and structure |
|---|
Probab=98.76 E-value=6.7e-08 Score=85.44 Aligned_cols=84 Identities=19% Similarity=0.237 Sum_probs=64.7
Q ss_pred CCCCCCEEEEEecCCCccHHHHHhhhCCCcEEEEEeCChHHHHHHHHHHHcC--CCeEEEEccCCCCcccccCCCcEeEE
Q 021911 140 WIKPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKR--TNVIPIIEDARHPAKYRMLVGMVDVI 217 (305)
Q Consensus 140 ~~~~g~~VLDlG~G~G~~t~~la~~~~~~~~V~avD~s~~~~~~l~~~a~~~--~nI~~~~~D~~~~~~~~~~~~~fD~V 217 (305)
.+.++.+|||+|||+|.++..+++. +..+|++||+|+ .+++.++++ .+++++++|+...+... ....+ +|
T Consensus 28 ~~~~~~~VLDiG~G~G~lt~~L~~~--~~~~v~avEid~----~~~~~~~~~~~~~v~~i~~D~~~~~~~~-~~~~~-~v 99 (249)
T 3ftd_A 28 NIEEGNTVVEVGGGTGNLTKVLLQH--PLKKLYVIELDR----EMVENLKSIGDERLEVINEDASKFPFCS-LGKEL-KV 99 (249)
T ss_dssp TCCTTCEEEEEESCHHHHHHHHTTS--CCSEEEEECCCH----HHHHHHTTSCCTTEEEECSCTTTCCGGG-SCSSE-EE
T ss_pred CCCCcCEEEEEcCchHHHHHHHHHc--CCCeEEEEECCH----HHHHHHHhccCCCeEEEEcchhhCChhH-ccCCc-EE
Confidence 4678899999999999999999987 346999999999 555555543 68999999998775332 11244 89
Q ss_pred EEeCCChhHHHHHH
Q 021911 218 FSDVAQPDQARILA 231 (305)
Q Consensus 218 ~~d~~~~~~~~~l~ 231 (305)
++|+|......++.
T Consensus 100 v~NlPy~i~~~il~ 113 (249)
T 3ftd_A 100 VGNLPYNVASLIIE 113 (249)
T ss_dssp EEECCTTTHHHHHH
T ss_pred EEECchhccHHHHH
Confidence 99999766666665
|
| >3lkd_A Type I restriction-modification system methyltransferase subunit; Q5M500_STRT2, STU0711, NESG, SUR80, structural genomics, PSI-2; 2.25A {Streptococcus thermophilus} | Back alignment and structure |
|---|
Probab=98.74 E-value=2.8e-07 Score=90.19 Aligned_cols=139 Identities=14% Similarity=0.028 Sum_probs=88.8
Q ss_pred CCCCCEEEEEecCCCccHHHHHhhhC--CCcEEEEEeCChHHHHHHHHHHHcC----CCeEEEEccCCCCcccccCCCcE
Q 021911 141 IKPGARVLYLGAASGTTVSHVSDIVG--PNGVVYAVEFSHRSGRDLVNMAKKR----TNVIPIIEDARHPAKYRMLVGMV 214 (305)
Q Consensus 141 ~~~g~~VLDlG~G~G~~t~~la~~~~--~~~~V~avD~s~~~~~~l~~~a~~~----~nI~~~~~D~~~~~~~~~~~~~f 214 (305)
+.++.+|||.|||+|++...+++.+. ...+++++|+++.+..-+..++... .++.+++.|....+........|
T Consensus 219 ~~~~~~VlDPaCGSG~fLi~a~~~l~~~~~~~i~G~Eid~~~~~lA~~Nl~l~gi~~~~~~I~~gDtL~~d~p~~~~~~f 298 (542)
T 3lkd_A 219 DKQGFTLYDATMGSGSLLLNAKRYSRQPQTVVYFGQELNTSTYNLARMNMILHGVPIENQFLHNADTLDEDWPTQEPTNF 298 (542)
T ss_dssp TCTTCEEEETTCTTSTTGGGHHHHCSCTTTCEEEEEESCHHHHHHHHHHHHHTTCCGGGEEEEESCTTTSCSCCSSCCCB
T ss_pred CCCCCEEeecccchhHHHHHHHHHHHhccCceEEEEECcHHHHHHHHHHHHHcCCCcCccceEecceecccccccccccc
Confidence 45788999999999999999998863 2468999999995543332222111 35788899986552111124689
Q ss_pred eEEEEeCCCh-----------h---------------HHHHHHHHHhccCC-CCcEEEEEEcccccCCCCchhhhHHHHH
Q 021911 215 DVIFSDVAQP-----------D---------------QARILALNASYFLK-AGGHFVISIKANCIDSTVPAEAVFQSEV 267 (305)
Q Consensus 215 D~V~~d~~~~-----------~---------------~~~~l~~~a~~~Lk-pGG~lv~s~~~~~i~~~~~~~~v~~~~~ 267 (305)
|+|++|||.. + ... +..++.++|| |+|++.+.++...+... .. .....
T Consensus 299 D~IvaNPPf~~~~~~~~~~~~d~rf~~~G~~~~~s~~~~~-Fl~~~l~~Lk~~gGr~a~VlP~g~Lf~~-~~---~~~iR 373 (542)
T 3lkd_A 299 DGVLMNPPYSAKWSASSGFMDDPRFSPFGKLAPKSKADFA-FLLHGYYHLKQDNGVMAIVLPHGVLFRG-NA---EGTIR 373 (542)
T ss_dssp SEEEECCCTTCCCCCCGGGGGSTTTGGGSSCCCTTCCHHH-HHHHHHHTBCTTTCEEEEEEETHHHHCC-TH---HHHHH
T ss_pred cEEEecCCcCCccccchhhhhhhhhhhhhhcCCCchhhHH-HHHHHHHHhCCCceeEEEEecchHhhCC-ch---hHHHH
Confidence 9999999920 0 122 3448999999 99999999854333221 11 12224
Q ss_pred HHHHHCCCcEeEEeecCC
Q 021911 268 KKLQQDQFKPFEQVTLEP 285 (305)
Q Consensus 268 ~~l~~~Gf~~~e~~~l~p 285 (305)
++|.+. +.+..++.+.+
T Consensus 374 k~Lle~-~~l~~II~LP~ 390 (542)
T 3lkd_A 374 KALLEE-GAIDTVIGLPA 390 (542)
T ss_dssp HHHHHT-TCEEEEEECCS
T ss_pred HHHHhC-CceeEEEEccc
Confidence 555444 44555665543
|
| >3c6k_A Spermine synthase; spermidine aminopropyltransferase, SPMSY, structural genomics, structural genomics consortium, SGC, phosphoprotein; HET: SPD MTA; 1.95A {Homo sapiens} PDB: 3c6m_A* | Back alignment and structure |
|---|
Probab=98.73 E-value=1.4e-07 Score=87.82 Aligned_cols=144 Identities=20% Similarity=0.244 Sum_probs=95.3
Q ss_pred CCCEEEEEecCCCccHHHHHhhhCCCcEEEEEeCChHHHHHHHHHHHcC--------------CCeEEEEccCCCCccc-
Q 021911 143 PGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKR--------------TNVIPIIEDARHPAKY- 207 (305)
Q Consensus 143 ~g~~VLDlG~G~G~~t~~la~~~~~~~~V~avD~s~~~~~~l~~~a~~~--------------~nI~~~~~D~~~~~~~- 207 (305)
+..+||-||.|.|..+..+++. +..+|+.||+++ .+++.+++. +++++++.|+......
T Consensus 205 ~pkrVLIIGgGdG~~~revlkh--~~~~V~~VEIDp----~VVe~ar~yfp~~~~~~~d~pr~~rv~vii~Da~~fl~~~ 278 (381)
T 3c6k_A 205 TGKDVLILGGGDGGILCEIVKL--KPKMVTMVEIDQ----MVIDGCKKYMRKTCGDVLDNLKGDCYQVLIEDCIPVLKRY 278 (381)
T ss_dssp TTCEEEEEECTTCHHHHHHHTT--CCSEEEEEESCH----HHHHHHHHHCCC----CCSSSEETTEEEEESCHHHHHHHH
T ss_pred CCCeEEEECCCcHHHHHHHHhc--CCceeEEEccCH----HHHHHHHhhchhhhhhhhccccccceeeehHHHHHHHHhh
Confidence 4589999999999999999986 346899999999 444444431 4588999998765421
Q ss_pred ccCCCcEeEEEEeCCC------h------h-HHHHHHHHHhccCCCCcEEEEEEcccccCCCCchhhhHHHHHHHHHHCC
Q 021911 208 RMLVGMVDVIFSDVAQ------P------D-QARILALNASYFLKAGGHFVISIKANCIDSTVPAEAVFQSEVKKLQQDQ 274 (305)
Q Consensus 208 ~~~~~~fD~V~~d~~~------~------~-~~~~l~~~a~~~LkpGG~lv~s~~~~~i~~~~~~~~v~~~~~~~l~~~G 274 (305)
.....+||+||+|.+. | . ..+.+. .+++.|+|+|.|+... .|... ...+....+.|++.
T Consensus 279 ~~~~~~yDvIIvDl~D~~~s~~p~g~a~~Lft~eFy~-~~~~~L~p~GVlv~Q~--~s~~~----~~~~~~i~~tl~~v- 350 (381)
T 3c6k_A 279 AKEGREFDYVINDLTAVPISTSPEEDSTWEFLRLILD-LSMKVLKQDGKYFTQG--NCVNL----TEALSLYEEQLGRL- 350 (381)
T ss_dssp HHHTCCEEEEEEECCSSCCCCC----CHHHHHHHHHH-HHHHTEEEEEEEEEEE--EETTC----HHHHHHHHHHHTTS-
T ss_pred hhccCceeEEEECCCCCcccCcccCcchHHHHHHHHH-HHHHhcCCCCEEEEec--CCCcc----hhHHHHHHHHHHHh-
Confidence 1123589999999642 1 1 234454 7899999999998764 33221 12333444556554
Q ss_pred CcEeEE----eecCCCCCceEEEEEEEcCC
Q 021911 275 FKPFEQ----VTLEPFERDHACVVGGYRMP 300 (305)
Q Consensus 275 f~~~e~----~~l~p~~~~~~~vv~~~~~~ 300 (305)
|..... ..+..|...+.++++.++..
T Consensus 351 F~~v~~~~~~~~VPSy~~~W~F~~aSK~~~ 380 (381)
T 3c6k_A 351 YCPVEFSKEIVCVPSYLELWVFYTVWKKAK 380 (381)
T ss_dssp SSCEEEEEEEECCGGGSSCEEEEEEEECCC
T ss_pred CCcceEeeEEEEecCCCCceeeeEEECCCC
Confidence 443322 34555767788888887643
|
| >3s1s_A Restriction endonuclease bpusi; PD--(D/E)XK catalytic motif, gamma-N6M-adenosine methyltrans S-adenosyl-methionine binding, hydrolase; HET: SAH; 2.35A {Bacillus pumilus} | Back alignment and structure |
|---|
Probab=98.71 E-value=2.4e-07 Score=93.34 Aligned_cols=138 Identities=10% Similarity=-0.080 Sum_probs=83.7
Q ss_pred CCCCEEEEEecCCCccHHHHHhhhC--CCcEEEEEeCChHHHHHH--HHHHHcC------CCeEEEEccCCCCcccccCC
Q 021911 142 KPGARVLYLGAASGTTVSHVSDIVG--PNGVVYAVEFSHRSGRDL--VNMAKKR------TNVIPIIEDARHPAKYRMLV 211 (305)
Q Consensus 142 ~~g~~VLDlG~G~G~~t~~la~~~~--~~~~V~avD~s~~~~~~l--~~~a~~~------~nI~~~~~D~~~~~~~~~~~ 211 (305)
.++.+|||.|||+|.+...+++.+. ...+++++|+++.++.-+ ...+..+ .++.+...|+..+... ..
T Consensus 320 ~~g~rVLDPaCGSG~FLIaaA~~l~ei~~~~IyGvEIDp~Al~LAK~RlNL~lN~LlhGi~~~~I~~dD~L~~~~~--~~ 397 (878)
T 3s1s_A 320 TEDEVISDPAAGSGNLLATVSAGFNNVMPRQIWANDIETLFLELLSIRLGLLFPQLVSSNNAPTITGEDVCSLNPE--DF 397 (878)
T ss_dssp CTTCEEEETTCTTSHHHHHHHHTSTTCCGGGEEEECSCGGGHHHHHHHHHTTSTTTCBTTBCCEEECCCGGGCCGG--GG
T ss_pred CCCCEEEECCCCccHHHHHHHHHhcccCCCeEEEEECCHHHHHHHHHHHHHHHhhhhcCCCcceEEecchhccccc--cc
Confidence 4678999999999999999998763 135799999999554333 1111110 2234445555543211 24
Q ss_pred CcEeEEEEeCCCh-------h------------------------HHHHHHHHHhccCCCCcEEEEEEcccccCCCCchh
Q 021911 212 GMVDVIFSDVAQP-------D------------------------QARILALNASYFLKAGGHFVISIKANCIDSTVPAE 260 (305)
Q Consensus 212 ~~fD~V~~d~~~~-------~------------------------~~~~l~~~a~~~LkpGG~lv~s~~~~~i~~~~~~~ 260 (305)
..||+|++|||.- . ....+..++.++|+|+|++++.++...+.....
T Consensus 398 ~kFDVVIgNPPYg~~~~~~~e~kd~~~r~~~g~p~~p~s~~G~~DLy~aFIe~Al~lLKpGGrLAfIlP~s~Lf~sg~-- 475 (878)
T 3s1s_A 398 ANVSVVVMNPPYVSGVTDPAIKRKFAHKIIQLTGNRPQTLFGQIGVEALFLELVTELVQDGTVISAIMPKQYLTAQGN-- 475 (878)
T ss_dssp TTEEEEEECCBCCSSCCCHHHHHHHHHHHHHHHSSCCSSCSSSCCHHHHHHHHHHHHSCTTCEEEEEEETHHHHCCSH--
T ss_pred CCCCEEEECCCccccccchhhhhhHHHHhhhhccccccccccccchHHHHHHHHHHhcCCCcEEEEEEChHHhccCCh--
Confidence 6899999999930 0 122334478899999999999985322211110
Q ss_pred hhHHHHHHHHHHCCCcEeEEeecCC
Q 021911 261 AVFQSEVKKLQQDQFKPFEQVTLEP 285 (305)
Q Consensus 261 ~v~~~~~~~l~~~Gf~~~e~~~l~p 285 (305)
......++|.+ .+.+..++.+..
T Consensus 476 -~~kkLRk~LLe-~~~I~aIIdLP~ 498 (878)
T 3s1s_A 476 -ESKAFREFLVG-NFGLEHIFLYPR 498 (878)
T ss_dssp -HHHHHHHHHTT-TTCEEEEEECCB
T ss_pred -HHHHHHHHHHh-CCCeEEEEECCC
Confidence 11222344433 366667776654
|
| >3frh_A 16S rRNA methylase; methyltransferase domain, helical N-terminal domain, methyltransferase, plasmid, transferase; HET: SAH; 1.20A {Escherichia coli} PDB: 3fri_A* 3b89_A* | Back alignment and structure |
|---|
Probab=98.69 E-value=2.9e-07 Score=80.57 Aligned_cols=132 Identities=11% Similarity=0.080 Sum_probs=79.9
Q ss_pred CCCCEEEEEecCCCccHHHHHhhhCCCcEEEEEeCChHHHHHHHHHHHcC-CCeEEEEccCCCCcccccCCCcEeEEEEe
Q 021911 142 KPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKR-TNVIPIIEDARHPAKYRMLVGMVDVIFSD 220 (305)
Q Consensus 142 ~~g~~VLDlG~G~G~~t~~la~~~~~~~~V~avD~s~~~~~~l~~~a~~~-~nI~~~~~D~~~~~~~~~~~~~fD~V~~d 220 (305)
.+..+|||||||+|-++..++ +...|+++|+|+.++.-+.+.+... .+..+.++|....+ +..+||+|++.
T Consensus 104 ~~p~~VLDlGCG~gpLal~~~----~~~~y~a~DId~~~i~~ar~~~~~~g~~~~~~v~D~~~~~----~~~~~DvvLll 175 (253)
T 3frh_A 104 ETPRRVLDIACGLNPLALYER----GIASVWGCDIHQGLGDVITPFAREKDWDFTFALQDVLCAP----PAEAGDLALIF 175 (253)
T ss_dssp CCCSEEEEETCTTTHHHHHHT----TCSEEEEEESBHHHHHHHHHHHHHTTCEEEEEECCTTTSC----CCCBCSEEEEE
T ss_pred CCCCeEEEecCCccHHHHHhc----cCCeEEEEeCCHHHHHHHHHHHHhcCCCceEEEeecccCC----CCCCcchHHHH
Confidence 456899999999998888777 5679999999996665555554443 67788899987654 24699999987
Q ss_pred CCCh---hHH-HHHHHHHhccCCCCcEEEEEEcccccCCCC-chhhhHHHHHHHHHHCCCcEeEEeec
Q 021911 221 VAQP---DQA-RILALNASYFLKAGGHFVISIKANCIDSTV-PAEAVFQSEVKKLQQDQFKPFEQVTL 283 (305)
Q Consensus 221 ~~~~---~~~-~~l~~~a~~~LkpGG~lv~s~~~~~i~~~~-~~~~v~~~~~~~l~~~Gf~~~e~~~l 283 (305)
...+ +|. .... ++.+.|+++ .++++.+..++.... -.+.-.....+..-...+.+++.+.+
T Consensus 176 k~lh~LE~q~~~~~~-~ll~aL~~~-~vvVsfPtksl~Gr~~gm~~~Y~~~~e~~~~~~~~~~~~~~~ 241 (253)
T 3frh_A 176 KLLPLLEREQAGSAM-ALLQSLNTP-RMAVSFPTRSLGGRGKGMEANYAAWFEGGLPAEFEIEDKKTI 241 (253)
T ss_dssp SCHHHHHHHSTTHHH-HHHHHCBCS-EEEEEEECC-----------CHHHHHHHHSCTTEEEEEEEEE
T ss_pred HHHHHhhhhchhhHH-HHHHHhcCC-CEEEEcChHHhcCCCcchhhHHHHHHHHHhhccchhhhheec
Confidence 6522 222 2333 677799998 455555433332222 11222222222222344666665544
|
| >2qy6_A UPF0209 protein YFCK; structural genomics, unknown function, PSI-2, protein struct initiative; 2.00A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.68 E-value=4.4e-08 Score=87.03 Aligned_cols=144 Identities=16% Similarity=0.127 Sum_probs=91.3
Q ss_pred CCCCCEEEEEecCCCccHHHHHhhh------CCC-----cEEEEEeCCh---HHHHHH----------H-HHHHc-----
Q 021911 141 IKPGARVLYLGAASGTTVSHVSDIV------GPN-----GVVYAVEFSH---RSGRDL----------V-NMAKK----- 190 (305)
Q Consensus 141 ~~~g~~VLDlG~G~G~~t~~la~~~------~~~-----~~V~avD~s~---~~~~~l----------~-~~a~~----- 190 (305)
.++..+|||+|+|+|..+..+++.+ .|. ..++++|..+ ..+..+ . +..+.
T Consensus 58 ~~~~~~ILEiGfGtG~n~l~~~~~~~~~~~~~p~~~~~~l~~isiE~~p~~~~~l~~a~~~~p~l~~~a~~l~~~w~~~~ 137 (257)
T 2qy6_A 58 PHPLFVVAESGFGTGLNFLTLWQAFDQFREAHPQAQLQRLHFISFEKFPLTRADLALAHQHWPELAPWAEQLQAQWPMPL 137 (257)
T ss_dssp SSSEEEEEESCCTTSHHHHHHHHHHHHHHHHCTTSSCCEEEEEEEESSCCCHHHHHHHHTTCGGGHHHHHHHHHTCCCSC
T ss_pred CCCCCEEEEECCChHHHHHHHHHHHHhhhhhCCCCCcceeEEEEEECCcCCHHHHHHHHhcChhHHHHHHHHHHhccccc
Confidence 3456799999999999999888765 553 4899999876 222211 1 11111
Q ss_pred -----------CCCeEEEEccCCCCcccc--cCCCcEeEEEEeCC----Chh--HHHHHHHHHhccCCCCcEEEEEEccc
Q 021911 191 -----------RTNVIPIIEDARHPAKYR--MLVGMVDVIFSDVA----QPD--QARILALNASYFLKAGGHFVISIKAN 251 (305)
Q Consensus 191 -----------~~nI~~~~~D~~~~~~~~--~~~~~fD~V~~d~~----~~~--~~~~l~~~a~~~LkpGG~lv~s~~~~ 251 (305)
+.+|.++..|+.+..+.. .....||+|+.|+. +|+ +.+++. .+.++|||||+|+..+
T Consensus 138 ~g~~r~~~~~~~~~l~l~~GDa~~~l~~~~~~~~~~~D~iflD~fsp~~~p~lw~~~~l~-~l~~~L~pGG~l~tys--- 213 (257)
T 2qy6_A 138 PGCHRLLLDEGRVTLDLWFGDINELISQLDDSLNQKVDAWFLDGFAPAKNPDMWTQNLFN-AMARLARPGGTLATFT--- 213 (257)
T ss_dssp SEEEEEEEC--CEEEEEEESCHHHHGGGSCGGGTTCEEEEEECSSCTTTCGGGCCHHHHH-HHHHHEEEEEEEEESC---
T ss_pred cchhheeccCCceEEEEEECcHHHHHhhcccccCCeEEEEEECCCCcccChhhcCHHHHH-HHHHHcCCCcEEEEEe---
Confidence 135778889987643221 00137999999974 333 567777 9999999999988543
Q ss_pred ccCCCCchhhhHHHHHHHHHHCCCcEeEEeecCCCCCceEEEEEEEcCCC
Q 021911 252 CIDSTVPAEAVFQSEVKKLQQDQFKPFEQVTLEPFERDHACVVGGYRMPK 301 (305)
Q Consensus 252 ~i~~~~~~~~v~~~~~~~l~~~Gf~~~e~~~l~p~~~~~~~vv~~~~~~~ 301 (305)
+ . .. ....|+++||++.+. ..+.+..-++++.+..+.
T Consensus 214 a-----a-~~----vrr~L~~aGF~v~~~---~g~~~kr~m~~a~~~~~~ 250 (257)
T 2qy6_A 214 S-----A-GF----VRRGLQEAGFTMQKR---KGFGRKREMLCGVMEQTE 250 (257)
T ss_dssp C-----B-HH----HHHHHHHHTEEEEEE---CCSTTCCCEEEEEEC---
T ss_pred C-----C-HH----HHHHHHHCCCEEEeC---CCCCCCCceEEEEecCcc
Confidence 1 1 11 235567789987654 334444456777776654
|
| >3lkz_A Non-structural protein 5; flavivirus, methyltransferase, inhibitor, P nucleotide-binding, RNA replication, viral protein; HET: SFG; 2.00A {West nile virus} | Back alignment and structure |
|---|
Probab=98.67 E-value=5.8e-08 Score=86.63 Aligned_cols=117 Identities=17% Similarity=0.166 Sum_probs=80.5
Q ss_pred hhhHHHHHHHccccccCCCCCCEEEEEecCCCccHHHHHhhhCCCcEEEEEeCChHHHH--HHHHHHHcCCCeEEEEc-c
Q 021911 124 FRSKLAAAVLGGVDNIWIKPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGR--DLVNMAKKRTNVIPIIE-D 200 (305)
Q Consensus 124 ~~s~l~a~ll~~l~~~~~~~g~~VLDlG~G~G~~t~~la~~~~~~~~V~avD~s~~~~~--~l~~~a~~~~nI~~~~~-D 200 (305)
|.|.-+..|....++..++++.+||||||++|.++..++...+. ..|+|+|+-..--. .+.+... ...|.++.. |
T Consensus 75 y~SR~~~KL~ei~~~~~l~~~~~VlDLGaapGGwsq~~~~~~gv-~~V~avdvG~~~he~P~~~~ql~-w~lV~~~~~~D 152 (321)
T 3lkz_A 75 PVSRGTAKLRWLVERRFLEPVGKVIDLGCGRGGWCYYMATQKRV-QEVRGYTKGGPGHEEPQLVQSYG-WNIVTMKSGVD 152 (321)
T ss_dssp CSSTHHHHHHHHHHTTSCCCCEEEEEETCTTCHHHHHHTTCTTE-EEEEEECCCSTTSCCCCCCCBTT-GGGEEEECSCC
T ss_pred ccchHHHHHHHHHHhcCCCCCCEEEEeCCCCCcHHHHHHhhcCC-CEEEEEEcCCCCccCcchhhhcC-CcceEEEeccC
Confidence 36777777777777778899999999999999999999988653 37999999751000 0000000 024667766 8
Q ss_pred CCCCcccccCCCcEeEEEEeCCC------hhHHH---HHHHHHhccCCCC-cEEEEEE
Q 021911 201 ARHPAKYRMLVGMVDVIFSDVAQ------PDQAR---ILALNASYFLKAG-GHFVISI 248 (305)
Q Consensus 201 ~~~~~~~~~~~~~fD~V~~d~~~------~~~~~---~l~~~a~~~LkpG-G~lv~s~ 248 (305)
+....+ .++|+|+||+.. .++.+ +|. -+.++|+++ |.|++-+
T Consensus 153 v~~l~~-----~~~D~ivcDigeSs~~~~ve~~Rtl~vLe-l~~~wL~~~~~~f~~KV 204 (321)
T 3lkz_A 153 VFYRPS-----ECCDTLLCDIGESSSSAEVEEHRTIRVLE-MVEDWLHRGPREFCVKV 204 (321)
T ss_dssp TTSSCC-----CCCSEEEECCCCCCSCHHHHHHHHHHHHH-HHHHHHTTCCCEEEEEE
T ss_pred HhhCCC-----CCCCEEEEECccCCCChhhhhhHHHHHHH-HHHHHhccCCCcEEEEE
Confidence 766543 579999999982 13433 333 567889988 8888865
|
| >4gqb_A Protein arginine N-methyltransferase 5; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens} PDB: 4g56_A* | Back alignment and structure |
|---|
Probab=98.67 E-value=7e-08 Score=95.64 Aligned_cols=96 Identities=22% Similarity=0.214 Sum_probs=68.2
Q ss_pred CCEEEEEecCCCccHHH---HHhhhCCCcEEEEEeCChHHHHHHHHHHHcC---CCeEEEEccCCCCcccccCCCcEeEE
Q 021911 144 GARVLYLGAASGTTVSH---VSDIVGPNGVVYAVEFSHRSGRDLVNMAKKR---TNVIPIIEDARHPAKYRMLVGMVDVI 217 (305)
Q Consensus 144 g~~VLDlG~G~G~~t~~---la~~~~~~~~V~avD~s~~~~~~l~~~a~~~---~nI~~~~~D~~~~~~~~~~~~~fD~V 217 (305)
...|||+|||+|-++.. +++......+|||||-|+.+... ++..+.+ ..|++++.|+++.. +++++|+|
T Consensus 358 ~~vVldVGaGrGpLv~~al~A~a~~~~~vkVyAVEknp~A~~a-~~~v~~N~~~dkVtVI~gd~eev~----LPEKVDII 432 (637)
T 4gqb_A 358 VQVLMVLGAGRGPLVNASLRAAKQADRRIKLYAVEKNPNAVVT-LENWQFEEWGSQVTVVSSDMREWV----APEKADII 432 (637)
T ss_dssp EEEEEEESCTTSHHHHHHHHHHHHTTCEEEEEEEESCHHHHHH-HHHHHHHTTGGGEEEEESCTTTCC----CSSCEEEE
T ss_pred CcEEEEECCCCcHHHHHHHHHHHhcCCCcEEEEEECCHHHHHH-HHHHHhccCCCeEEEEeCcceecc----CCcccCEE
Confidence 35899999999998444 44443333479999999855332 2232222 67999999999875 45799999
Q ss_pred EEeCC-----ChhHHHHHHHHHhccCCCCcEEE
Q 021911 218 FSDVA-----QPDQARILALNASYFLKAGGHFV 245 (305)
Q Consensus 218 ~~d~~-----~~~~~~~l~~~a~~~LkpGG~lv 245 (305)
++... .....+++. ...++|||+|.++
T Consensus 433 VSEwMG~fLl~E~mlevL~-Ardr~LKPgGimi 464 (637)
T 4gqb_A 433 VSELLGSFADNELSPECLD-GAQHFLKDDGVSI 464 (637)
T ss_dssp ECCCCBTTBGGGCHHHHHH-HHGGGEEEEEEEE
T ss_pred EEEcCcccccccCCHHHHH-HHHHhcCCCcEEc
Confidence 99766 233446666 8889999999763
|
| >1qyr_A KSGA, high level kasugamycin resistance protein, S-adenosylMet; adenosine dimethyltransferase, rRNA modification, transferase, translation; 2.10A {Escherichia coli} SCOP: c.66.1.24 PDB: 4adv_V 3tpz_A | Back alignment and structure |
|---|
Probab=98.65 E-value=7e-08 Score=85.51 Aligned_cols=85 Identities=11% Similarity=0.090 Sum_probs=61.6
Q ss_pred CCCCCCEEEEEecCCCccHHHHHhhhCCCcEEEEEeCChHHHHHHHHHHHcC----CCeEEEEccCCCCcccccC--CCc
Q 021911 140 WIKPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKR----TNVIPIIEDARHPAKYRML--VGM 213 (305)
Q Consensus 140 ~~~~g~~VLDlG~G~G~~t~~la~~~~~~~~V~avD~s~~~~~~l~~~a~~~----~nI~~~~~D~~~~~~~~~~--~~~ 213 (305)
.+.++.+|||+|||+|.+|. ++. . ...+|++||+|+ +|++.++++ +|++++++|+...+..... ...
T Consensus 18 ~~~~~~~VLEIG~G~G~lt~-l~~-~-~~~~v~avEid~----~~~~~a~~~~~~~~~v~~i~~D~~~~~~~~~~~~~~~ 90 (252)
T 1qyr_A 18 NPQKGQAMVEIGPGLAALTE-PVG-E-RLDQLTVIELDR----DLAARLQTHPFLGPKLTIYQQDAMTFNFGELAEKMGQ 90 (252)
T ss_dssp CCCTTCCEEEECCTTTTTHH-HHH-T-TCSCEEEECCCH----HHHHHHHTCTTTGGGEEEECSCGGGCCHHHHHHHHTS
T ss_pred CCCCcCEEEEECCCCcHHHH-hhh-C-CCCeEEEEECCH----HHHHHHHHHhccCCceEEEECchhhCCHHHhhcccCC
Confidence 46788999999999999999 654 2 323399999999 666666554 4899999999875422111 124
Q ss_pred EeEEEEeCCChhHHHHHH
Q 021911 214 VDVIFSDVAQPDQARILA 231 (305)
Q Consensus 214 fD~V~~d~~~~~~~~~l~ 231 (305)
.|+|++|+|......++.
T Consensus 91 ~~~vvsNlPY~i~~~il~ 108 (252)
T 1qyr_A 91 PLRVFGNLPYNISTPLMF 108 (252)
T ss_dssp CEEEEEECCTTTHHHHHH
T ss_pred ceEEEECCCCCccHHHHH
Confidence 589999999666555555
|
| >3fut_A Dimethyladenosine transferase; methyltransferase, dimethyltransferase, dual-specific methyltransferase, 16S rRNA methyltransferase; 1.52A {Thermus thermophilus} PDB: 3fuu_A* 3fuv_A 3fuw_A* 3fux_A* | Back alignment and structure |
|---|
Probab=98.65 E-value=9.4e-08 Score=85.58 Aligned_cols=85 Identities=15% Similarity=0.068 Sum_probs=63.6
Q ss_pred CCCCCCEEEEEecCCCccHHHHHhhhCCCcEEEEEeCChHHHHHHHHHHHcCCCeEEEEccCCCCcccccCCCcEeEEEE
Q 021911 140 WIKPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKRTNVIPIIEDARHPAKYRMLVGMVDVIFS 219 (305)
Q Consensus 140 ~~~~g~~VLDlG~G~G~~t~~la~~~~~~~~V~avD~s~~~~~~l~~~a~~~~nI~~~~~D~~~~~~~~~~~~~fD~V~~ 219 (305)
.+.++ +|||+|||+|.+|..+++.. .+|++||+|+.++..+.+.... .|++++++|+...+... ...+|.|++
T Consensus 44 ~~~~~-~VLEIG~G~G~lt~~L~~~~---~~V~avEid~~~~~~l~~~~~~-~~v~vi~~D~l~~~~~~--~~~~~~iv~ 116 (271)
T 3fut_A 44 RPFTG-PVFEVGPGLGALTRALLEAG---AEVTAIEKDLRLRPVLEETLSG-LPVRLVFQDALLYPWEE--VPQGSLLVA 116 (271)
T ss_dssp CCCCS-CEEEECCTTSHHHHHHHHTT---CCEEEEESCGGGHHHHHHHTTT-SSEEEEESCGGGSCGGG--SCTTEEEEE
T ss_pred CCCCC-eEEEEeCchHHHHHHHHHcC---CEEEEEECCHHHHHHHHHhcCC-CCEEEEECChhhCChhh--ccCccEEEe
Confidence 56778 99999999999999999983 4899999999655555444432 68999999997765321 136899999
Q ss_pred eCCChhHHHHHH
Q 021911 220 DVAQPDQARILA 231 (305)
Q Consensus 220 d~~~~~~~~~l~ 231 (305)
|+|......++.
T Consensus 117 NlPy~iss~il~ 128 (271)
T 3fut_A 117 NLPYHIATPLVT 128 (271)
T ss_dssp EECSSCCHHHHH
T ss_pred cCcccccHHHHH
Confidence 999544333333
|
| >3eld_A Methyltransferase; flavivirus, RNA capping, guanylyltransfer viral enzyme structure; HET: SFG; 1.90A {Wesselsbron virus} PDB: 3elu_A* 3elw_A* 3ely_A* 3emb_A* 3emd_A* | Back alignment and structure |
|---|
Probab=98.64 E-value=1.7e-08 Score=90.46 Aligned_cols=115 Identities=15% Similarity=0.149 Sum_probs=74.6
Q ss_pred hhHHHHHHHccccccCCCCCCEEEEEecCCCccHHHHHhhhCCCcEEEEEeCChHHHHHHHHHHH---c-CCCeEEEEcc
Q 021911 125 RSKLAAAVLGGVDNIWIKPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAK---K-RTNVIPIIED 200 (305)
Q Consensus 125 ~s~l~a~ll~~l~~~~~~~g~~VLDlG~G~G~~t~~la~~~~~~~~V~avD~s~~~~~~l~~~a~---~-~~nI~~~~~D 200 (305)
+|..+..|++..++-.++++.+||||||+||.|+..+++.. +...|+++|+.. ++..... . ..+|.....+
T Consensus 63 rSRaa~KL~ei~ek~l~~~g~~vlDLGaaPGgWsqva~~~~-gv~sV~Gvdlg~----~~~~~P~~~~~~~~~iv~~~~~ 137 (300)
T 3eld_A 63 VSRGAAKIRWLHERGYLRITGRVLDLGCGRGGWSYYAAAQK-EVMSVKGYTLGI----EGHEKPIHMQTLGWNIVKFKDK 137 (300)
T ss_dssp SSTTHHHHHHHHHHTSCCCCEEEEEETCTTCHHHHHHHTST-TEEEEEEECCCC----TTSCCCCCCCBTTGGGEEEECS
T ss_pred cchHHHHHHHHHHhCCCCCCCEEEEcCCCCCHHHHHHHHhc-CCceeeeEEecc----ccccccccccccCCceEEeecC
Confidence 55555566555554356789999999999999999999864 344789999975 2100000 0 0234444433
Q ss_pred CCCCcccccCCCcEeEEEEeCCCh------hH---HHHHHHHHhccCCCC-cEEEEEE
Q 021911 201 ARHPAKYRMLVGMVDVIFSDVAQP------DQ---ARILALNASYFLKAG-GHFVISI 248 (305)
Q Consensus 201 ~~~~~~~~~~~~~fD~V~~d~~~~------~~---~~~l~~~a~~~LkpG-G~lv~s~ 248 (305)
+... .+....+|+|+||++.. |+ ..+|. -|.++|+|| |.|++-+
T Consensus 138 ~di~---~l~~~~~DlVlsD~APnsG~~~~D~~rs~~LL~-~A~~~LkpG~G~FV~Kv 191 (300)
T 3eld_A 138 SNVF---TMPTEPSDTLLCDIGESSSNPLVERDRTMKVLE-NFERWKHVNTENFCVKV 191 (300)
T ss_dssp CCTT---TSCCCCCSEEEECCCCCCSSHHHHHHHHHHHHH-HHHHHCCTTCCEEEEEE
T ss_pred ceee---ecCCCCcCEEeecCcCCCCCHHHHHHHHHHHHH-HHHHHhcCCCCcEEEEe
Confidence 2211 11246899999998833 33 34444 678899999 9999987
|
| >3r24_A NSP16, 2'-O-methyl transferase; methyltransferase, zinc-finger, transferase, viral protein; HET: SAM; 2.00A {Sars coronavirus} | Back alignment and structure |
|---|
Probab=98.63 E-value=3.3e-07 Score=81.73 Aligned_cols=134 Identities=20% Similarity=0.241 Sum_probs=86.4
Q ss_pred CCCCCCEEEEEec------CCCccHHHHHhhhCCC-cEEEEEeCChHHHHHHHHHHHcCCCeEEEEccCCCCcccccCCC
Q 021911 140 WIKPGARVLYLGA------ASGTTVSHVSDIVGPN-GVVYAVEFSHRSGRDLVNMAKKRTNVIPIIEDARHPAKYRMLVG 212 (305)
Q Consensus 140 ~~~~g~~VLDlG~------G~G~~t~~la~~~~~~-~~V~avD~s~~~~~~l~~~a~~~~nI~~~~~D~~~~~~~~~~~~ 212 (305)
....+++|||||| +||+ .+++.+.+. +.|+++|+.+ .. ...+ .+++.|+..... ..
T Consensus 106 ~vp~gmrVLDLGA~s~kg~APGS---~VLr~~~p~g~~VVavDL~~--------~~-sda~-~~IqGD~~~~~~----~~ 168 (344)
T 3r24_A 106 AVPYNMRVIHFGAGSDKGVAPGT---AVLRQWLPTGTLLVDSDLND--------FV-SDAD-STLIGDCATVHT----AN 168 (344)
T ss_dssp CCCTTCEEEEESCCCTTSBCHHH---HHHHHHSCTTCEEEEEESSC--------CB-CSSS-EEEESCGGGEEE----SS
T ss_pred eecCCCEEEeCCCCCCCCCCCcH---HHHHHhCCCCcEEEEeeCcc--------cc-cCCC-eEEEcccccccc----CC
Confidence 4567999999996 8998 344455676 5999999987 11 1223 559999765432 47
Q ss_pred cEeEEEEeCCCh-------------hHHHHHHHHHhccCCCCcEEEEEEcccccCCCCchhhhHHHHHHHHHHCCCcEeE
Q 021911 213 MVDVIFSDVAQP-------------DQARILALNASYFLKAGGHFVISIKANCIDSTVPAEAVFQSEVKKLQQDQFKPFE 279 (305)
Q Consensus 213 ~fD~V~~d~~~~-------------~~~~~l~~~a~~~LkpGG~lv~s~~~~~i~~~~~~~~v~~~~~~~l~~~Gf~~~e 279 (305)
+||+|++|++.. ...+....-|.++|+|||.|++-+.. ...+ +++.++++ -|+.++
T Consensus 169 k~DLVISDMAPNtTG~~D~d~~Rs~~L~ElALdfA~~~LkpGGsFvVKVFQ----Gsg~------~~L~~lrk-~F~~VK 237 (344)
T 3r24_A 169 KWDLIISDMYDPRTKHVTKENDSKEGFFTYLCGFIKQKLALGGSIAVKITE----HSWN------ADLYKLMG-HFSWWT 237 (344)
T ss_dssp CEEEEEECCCCTTSCSSCSCCCCCCTHHHHHHHHHHHHEEEEEEEEEEECS----SSCC------HHHHHHHT-TEEEEE
T ss_pred CCCEEEecCCCCcCCccccchhHHHHHHHHHHHHHHHhCcCCCEEEEEEec----CCCH------HHHHHHHh-hCCeEE
Confidence 899999999821 13444443577899999999998721 1111 12344554 588777
Q ss_pred Eee-cCCCCCceEEEEEEEcCCC
Q 021911 280 QVT-LEPFERDHACVVGGYRMPK 301 (305)
Q Consensus 280 ~~~-l~p~~~~~~~vv~~~~~~~ 301 (305)
.+. -.--+..+.++||.-.+..
T Consensus 238 ~fK~ASRa~SsEvYLVG~gfKg~ 260 (344)
T 3r24_A 238 AFVTNVNASSSEAFLIGANYLGK 260 (344)
T ss_dssp EEEEGGGTTSSCEEEEEEEECSS
T ss_pred EECCCCCCCCeeEEEEeeeccCC
Confidence 663 2223345666777655544
|
| >3khk_A Type I restriction-modification system methylation subunit; structural genomics, PSI-2, protein structure initiative; 2.55A {Methanosarcina mazei} | Back alignment and structure |
|---|
Probab=98.59 E-value=1.2e-07 Score=92.97 Aligned_cols=152 Identities=14% Similarity=0.000 Sum_probs=89.2
Q ss_pred CCCCCEEEEEecCCCccHHHHHhhhCC--------------CcEEEEEeCChHHHHHHHHHHHcC---CCeEEEEccCCC
Q 021911 141 IKPGARVLYLGAASGTTVSHVSDIVGP--------------NGVVYAVEFSHRSGRDLVNMAKKR---TNVIPIIEDARH 203 (305)
Q Consensus 141 ~~~g~~VLDlG~G~G~~t~~la~~~~~--------------~~~V~avD~s~~~~~~l~~~a~~~---~nI~~~~~D~~~ 203 (305)
+.++ +|||.|||+|.+...+++.+.. ...++++|+++.+++-+...+... .+|.+++.|...
T Consensus 243 p~~~-~VlDPaCGSG~fLi~a~~~l~~~~~~~~~~~~~~~~~~~i~G~Eid~~~~~lA~~Nl~l~gi~~~i~i~~gDtL~ 321 (544)
T 3khk_A 243 PYKG-RVYDPAMGSGGFFVSSDKFIEKHANVKHYNASEQKKQISVYGQESNPTTWKLAAMNMVIRGIDFNFGKKNADSFL 321 (544)
T ss_dssp CCSE-EEEESSCTTCHHHHHHHHHHHHHHHHHTSCHHHHGGGEEEEECCCCHHHHHHHHHHHHHTTCCCBCCSSSCCTTT
T ss_pred cCCC-eEeCcccCcCcHHHHHHHHHHHhccccccchHHHhhhceEEEEeCCHHHHHHHHHHHHHhCCCcccceeccchhc
Confidence 4454 9999999999999888765420 358999999995543332222211 234346677654
Q ss_pred CcccccCCCcEeEEEEeCCChh--------------------------------HHHHHHHHHhccCCCCcEEEEEEccc
Q 021911 204 PAKYRMLVGMVDVIFSDVAQPD--------------------------------QARILALNASYFLKAGGHFVISIKAN 251 (305)
Q Consensus 204 ~~~~~~~~~~fD~V~~d~~~~~--------------------------------~~~~l~~~a~~~LkpGG~lv~s~~~~ 251 (305)
.+.. ....||+|++|||... +...+ .++.++|||+|++++.++..
T Consensus 322 ~~~~--~~~~fD~Iv~NPPf~~~~~~~~~~~~d~r~~~g~~~~~~~~~~~~~~~~~~Fl-~~~l~~Lk~gGr~aiVlP~g 398 (544)
T 3khk_A 322 DDQH--PDLRADFVMTNPPFNMKDWWHEKLADDPRWTINTNGEKRILTPPTGNANFAWM-LHMLYHLAPTGSMALLLANG 398 (544)
T ss_dssp SCSC--TTCCEEEEEECCCSSCCSCCCGGGTTCGGGEECCC--CEECCCCTTCTHHHHH-HHHHHTEEEEEEEEEEEETH
T ss_pred Cccc--ccccccEEEECCCcCCccccchhhhhhhhhhcCcccccccccCCCcchhHHHH-HHHHHHhccCceEEEEecch
Confidence 4322 2468999999999210 12344 48999999999999998543
Q ss_pred ccCCCCchhhhHHHHHHHHHHCCCcEeEEeecCC--CC---CceEEEEEEEcCC
Q 021911 252 CIDSTVPAEAVFQSEVKKLQQDQFKPFEQVTLEP--FE---RDHACVVGGYRMP 300 (305)
Q Consensus 252 ~i~~~~~~~~v~~~~~~~l~~~Gf~~~e~~~l~p--~~---~~~~~vv~~~~~~ 300 (305)
.+...... .....++|.+. +.+..++.+.+ |. -.-++++..+.++
T Consensus 399 ~L~~~~~~---~~~iRk~Lle~-~~l~aII~LP~~lF~~t~i~t~Ilvl~K~k~ 448 (544)
T 3khk_A 399 SMSSNTNN---EGEIRKTLVEQ-DLVECMVALPGQLFTNTQIPACIWFLTKDKN 448 (544)
T ss_dssp HHHCCGGG---HHHHHHHHHHT-TCEEEEEECCTTBCCSCSSCEEEEEEESCCS
T ss_pred hhhcCcch---HHHHHHHHHhC-CcHhEEEECCCCCCCCCCCCeEEEEEecCCC
Confidence 32222111 12224555444 34556665543 21 2334455555443
|
| >4azs_A Methyltransferase WBDD; kinase; HET: AMP SAM; 2.15A {Escherichia coli} PDB: 4azt_A* 4azv_A* 4azw_A* | Back alignment and structure |
|---|
Probab=98.56 E-value=3.8e-08 Score=97.02 Aligned_cols=101 Identities=13% Similarity=0.024 Sum_probs=71.8
Q ss_pred CCCEEEEEecCCCccHHHHHhhhCCCcEEEEEeCChHHHHHHHHHHHcC--CCeEEEEccCCCCcccccCCCcEeEEEEe
Q 021911 143 PGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKR--TNVIPIIEDARHPAKYRMLVGMVDVIFSD 220 (305)
Q Consensus 143 ~g~~VLDlG~G~G~~t~~la~~~~~~~~V~avD~s~~~~~~l~~~a~~~--~nI~~~~~D~~~~~~~~~~~~~fD~V~~d 220 (305)
...+|||||||.|.++..||+. ..+|++||+|+.++..+...+.+. .+|.+.+.|+.+.... ...++||+|+|.
T Consensus 66 ~~~~vLDvGCG~G~~~~~la~~---ga~V~giD~~~~~i~~a~~~a~~~~~~~~~~~~~~~~~~~~~-~~~~~fD~v~~~ 141 (569)
T 4azs_A 66 RPLNVLDLGCAQGFFSLSLASK---GATIVGIDFQQENINVCRALAEENPDFAAEFRVGRIEEVIAA-LEEGEFDLAIGL 141 (569)
T ss_dssp SCCEEEEETCTTSHHHHHHHHT---TCEEEEEESCHHHHHHHHHHHHTSTTSEEEEEECCHHHHHHH-CCTTSCSEEEEE
T ss_pred CCCeEEEECCCCcHHHHHHHhC---CCEEEEECCCHHHHHHHHHHHHhcCCCceEEEECCHHHHhhh-ccCCCccEEEEC
Confidence 4579999999999999999987 358999999997766666666554 4799999998765321 135689999996
Q ss_pred CC---ChhHH--HHHHHHHhccCCCCcEEEEEE
Q 021911 221 VA---QPDQA--RILALNASYFLKAGGHFVISI 248 (305)
Q Consensus 221 ~~---~~~~~--~~l~~~a~~~LkpGG~lv~s~ 248 (305)
-. .++.. ..+. .+.+.|++++..++..
T Consensus 142 e~~ehv~~~~~~~~~~-~~~~tl~~~~~~~~~~ 173 (569)
T 4azs_A 142 SVFHHIVHLHGIDEVK-RLLSRLADVTQAVILE 173 (569)
T ss_dssp SCHHHHHHHHCHHHHH-HHHHHHHHHSSEEEEE
T ss_pred cchhcCCCHHHHHHHH-HHHHHhccccceeeEE
Confidence 55 12221 2222 4556678877666654
|
| >3cvo_A Methyltransferase-like protein of unknown functio; rossman fold, structural genomics, joint center for structur genomics, JCSG; HET: MSE PG4; 1.80A {Silicibacter pomeroyi dss-3} | Back alignment and structure |
|---|
Probab=98.55 E-value=4.5e-07 Score=77.55 Aligned_cols=98 Identities=15% Similarity=0.152 Sum_probs=70.7
Q ss_pred CCCCEEEEEecCCCccHHHHHhhhCCCcEEEEEeCChHHHHHHHHHHHcC-----CCeEEEEccCCCC------------
Q 021911 142 KPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKR-----TNVIPIIEDARHP------------ 204 (305)
Q Consensus 142 ~~g~~VLDlG~G~G~~t~~la~~~~~~~~V~avD~s~~~~~~l~~~a~~~-----~nI~~~~~D~~~~------------ 204 (305)
.+..+|||+|| |..|+.+|+. +.++|++||.++...+.+.+..++. .+|+++..|+...
T Consensus 29 ~~a~~VLEiGt--GySTl~lA~~--~~g~VvtvE~d~~~~~~ar~~l~~~g~~~~~~I~~~~gda~~~~~wg~p~~~~~~ 104 (202)
T 3cvo_A 29 EEAEVILEYGS--GGSTVVAAEL--PGKHVTSVESDRAWARMMKAWLAANPPAEGTEVNIVWTDIGPTGDWGHPVSDAKW 104 (202)
T ss_dssp HHCSEEEEESC--SHHHHHHHTS--TTCEEEEEESCHHHHHHHHHHHHHSCCCTTCEEEEEECCCSSBCGGGCBSSSTTG
T ss_pred hCCCEEEEECc--hHHHHHHHHc--CCCEEEEEeCCHHHHHHHHHHHHHcCCCCCCceEEEEeCchhhhcccccccchhh
Confidence 45689999998 5788888875 3689999999997766666555542 4799999997543
Q ss_pred ---cccc----cC--CCcEeEEEEeCCChhHHHHHHHHHhccCCCCcEEEE
Q 021911 205 ---AKYR----ML--VGMVDVIFSDVAQPDQARILALNASYFLKAGGHFVI 246 (305)
Q Consensus 205 ---~~~~----~~--~~~fD~V~~d~~~~~~~~~l~~~a~~~LkpGG~lv~ 246 (305)
+.+. .. ..+||+||+|..... ..+. .+..+|+|||.|++
T Consensus 105 ~~l~~~~~~i~~~~~~~~fDlIfIDg~k~~--~~~~-~~l~~l~~GG~Iv~ 152 (202)
T 3cvo_A 105 RSYPDYPLAVWRTEGFRHPDVVLVDGRFRV--GCAL-ATAFSITRPVTLLF 152 (202)
T ss_dssp GGTTHHHHGGGGCTTCCCCSEEEECSSSHH--HHHH-HHHHHCSSCEEEEE
T ss_pred hhHHHHhhhhhccccCCCCCEEEEeCCCch--hHHH-HHHHhcCCCeEEEE
Confidence 1111 01 268999999987542 4444 56789999998855
|
| >3ll7_A Putative methyltransferase; methytransferase, structural genomics, MCSG, PSI-2, protein initiative; HET: MSE; 1.80A {Porphyromonas gingivalis} | Back alignment and structure |
|---|
Probab=98.53 E-value=4.5e-08 Score=92.43 Aligned_cols=77 Identities=14% Similarity=0.078 Sum_probs=60.8
Q ss_pred CCCCEEEEEecCCCccHHHHHhhhCCCcEEEEEeCChHHHHHHHHHHHcC----CCeEEEEccCCCCcccccCCCcEeEE
Q 021911 142 KPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKR----TNVIPIIEDARHPAKYRMLVGMVDVI 217 (305)
Q Consensus 142 ~~g~~VLDlG~G~G~~t~~la~~~~~~~~V~avD~s~~~~~~l~~~a~~~----~nI~~~~~D~~~~~~~~~~~~~fD~V 217 (305)
.++.+|||+|||+|..+.++|.. ..+|++||+|+.++..+.++++.. .+|++++.|+.+.... ....+||+|
T Consensus 92 ~~g~~VLDLgcG~G~~al~LA~~---g~~V~~VD~s~~~l~~Ar~N~~~~~~gl~~i~~i~~Da~~~L~~-~~~~~fDvV 167 (410)
T 3ll7_A 92 REGTKVVDLTGGLGIDFIALMSK---ASQGIYIERNDETAVAARHNIPLLLNEGKDVNILTGDFKEYLPL-IKTFHPDYI 167 (410)
T ss_dssp CTTCEEEESSCSSSHHHHHHHTT---CSEEEEEESCHHHHHHHHHHHHHHSCTTCEEEEEESCGGGSHHH-HHHHCCSEE
T ss_pred CCCCEEEEeCCCchHHHHHHHhc---CCEEEEEECCHHHHHHHHHhHHHhccCCCcEEEEECcHHHhhhh-ccCCCceEE
Confidence 45899999999999999999987 258999999997776666665532 5799999999875321 012489999
Q ss_pred EEeCC
Q 021911 218 FSDVA 222 (305)
Q Consensus 218 ~~d~~ 222 (305)
++|+|
T Consensus 168 ~lDPP 172 (410)
T 3ll7_A 168 YVDPA 172 (410)
T ss_dssp EECCE
T ss_pred EECCC
Confidence 99998
|
| >2r6z_A UPF0341 protein in RSP 3' region; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 1.80A {Neisseria gonorrhoeae} | Back alignment and structure |
|---|
Probab=98.51 E-value=3e-08 Score=88.18 Aligned_cols=80 Identities=15% Similarity=0.111 Sum_probs=58.2
Q ss_pred CCCCCEEEEEecCCCccHHHHHhhhCCCcEEEEEeCCh-------HHHHHHHHHHHcC---CCeEEEEccCCCCcccccC
Q 021911 141 IKPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSH-------RSGRDLVNMAKKR---TNVIPIIEDARHPAKYRML 210 (305)
Q Consensus 141 ~~~g~~VLDlG~G~G~~t~~la~~~~~~~~V~avD~s~-------~~~~~l~~~a~~~---~nI~~~~~D~~~~~~~~~~ 210 (305)
+.++.+|||+|||+|..+..+|.. .++|+++|+|+ .+++.+.++++.. .+|++++.|+.+.... ..
T Consensus 81 ~~~~~~VLDlgcG~G~~a~~lA~~---g~~V~~vD~s~~~~~ll~~~l~~a~~n~~~~~~~~ri~~~~~d~~~~l~~-~~ 156 (258)
T 2r6z_A 81 HTAHPTVWDATAGLGRDSFVLASL---GLTVTAFEQHPAVACLLSDGIRRALLNPETQDTAARINLHFGNAAEQMPA-LV 156 (258)
T ss_dssp GGGCCCEEETTCTTCHHHHHHHHT---TCCEEEEECCHHHHHHHHHHHHHHHHSHHHHHHHTTEEEEESCHHHHHHH-HH
T ss_pred cCCcCeEEEeeCccCHHHHHHHHh---CCEEEEEECChhhhHHHHHHHHHHHhHHHhhCCccCeEEEECCHHHHHHh-hh
Confidence 456789999999999999999986 25899999999 5544443333222 3499999998764321 11
Q ss_pred C--CcEeEEEEeCCCh
Q 021911 211 V--GMVDVIFSDVAQP 224 (305)
Q Consensus 211 ~--~~fD~V~~d~~~~ 224 (305)
. .+||+|++|++.+
T Consensus 157 ~~~~~fD~V~~dP~~~ 172 (258)
T 2r6z_A 157 KTQGKPDIVYLDPMYP 172 (258)
T ss_dssp HHHCCCSEEEECCCC-
T ss_pred ccCCCccEEEECCCCC
Confidence 2 5899999998743
|
| >3ua3_A Protein arginine N-methyltransferase 5; TIM-barrel, rossmann fold, beta-barrel, symmetric arginine dimethylase, SAM binding; HET: SAH; 3.00A {Caenorhabditis elegans} PDB: 3ua4_A | Back alignment and structure |
|---|
Probab=98.49 E-value=1.5e-07 Score=93.48 Aligned_cols=101 Identities=19% Similarity=0.147 Sum_probs=71.2
Q ss_pred CCEEEEEecCCCccHHHHHhh---hC---------CCcEEEEEeCChHHHHHHHHHHHcC--CCeEEEEccCCCCccc--
Q 021911 144 GARVLYLGAASGTTVSHVSDI---VG---------PNGVVYAVEFSHRSGRDLVNMAKKR--TNVIPIIEDARHPAKY-- 207 (305)
Q Consensus 144 g~~VLDlG~G~G~~t~~la~~---~~---------~~~~V~avD~s~~~~~~l~~~a~~~--~nI~~~~~D~~~~~~~-- 207 (305)
...|||+|||+|.++..++.. .+ ...+|||||.|+.+...+....... ..|+++..|+++....
T Consensus 410 ~~VVldVGaGtGpLs~~al~A~~~a~~~~~~~~~~~~~kVyAVEknp~A~~~l~~~~~Ng~~d~VtVI~gd~eev~lp~~ 489 (745)
T 3ua3_A 410 TVVIYLLGGGRGPIGTKILKSEREYNNTFRQGQESLKVKLYIVEKNPNAIVTLKYMNVRTWKRRVTIIESDMRSLPGIAK 489 (745)
T ss_dssp EEEEEEESCTTCHHHHHHHHHHHHHHHHHSTTSCCCEEEEEEEECCHHHHHHHHHHHHHTTTTCSEEEESCGGGHHHHHH
T ss_pred CcEEEEECCCCCHHHHHHHHHHHHhCccccccccccccEEEEEeCChHHHHHHHHHHhcCCCCeEEEEeCchhhcccccc
Confidence 468999999999997543222 22 2349999999986655544444322 5699999999887530
Q ss_pred ccCCCcEeEEEEeCC-----ChhHHHHHHHHHhccCCCCcEEE
Q 021911 208 RMLVGMVDVIFSDVA-----QPDQARILALNASYFLKAGGHFV 245 (305)
Q Consensus 208 ~~~~~~fD~V~~d~~-----~~~~~~~l~~~a~~~LkpGG~lv 245 (305)
...++++|+|++... .....+.|. .+.++|||+|.++
T Consensus 490 ~~~~ekVDIIVSElmGsfl~nEL~pe~Ld-~v~r~Lkp~Gi~i 531 (745)
T 3ua3_A 490 DRGFEQPDIIVSELLGSFGDNELSPECLD-GVTGFLKPTTISI 531 (745)
T ss_dssp HTTCCCCSEEEECCCBTTBGGGSHHHHHH-TTGGGSCTTCEEE
T ss_pred cCCCCcccEEEEeccccccchhccHHHHH-HHHHhCCCCcEEE
Confidence 011479999999776 234556776 7889999999764
|
| >3tka_A Ribosomal RNA small subunit methyltransferase H; HET: SAM CTN PG4; 2.25A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.47 E-value=3.2e-07 Score=83.82 Aligned_cols=79 Identities=19% Similarity=0.240 Sum_probs=63.3
Q ss_pred CCCCCCEEEEEecCCCccHHHHHhhhCCCcEEEEEeCChHHHHHHHHHHHc--CCCeEEEEccCCCCccccc---CCCcE
Q 021911 140 WIKPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKK--RTNVIPIIEDARHPAKYRM---LVGMV 214 (305)
Q Consensus 140 ~~~~g~~VLDlG~G~G~~t~~la~~~~~~~~V~avD~s~~~~~~l~~~a~~--~~nI~~~~~D~~~~~~~~~---~~~~f 214 (305)
.++|+..+||..||.|..+..|++.+++.++|+|+|.++ ++++.++. ..++++++.++.+...+-. ...++
T Consensus 54 ~i~pggiyVD~TlG~GGHS~~iL~~lg~~GrVig~D~Dp----~Al~~A~rL~~~Rv~lv~~nF~~l~~~L~~~g~~~~v 129 (347)
T 3tka_A 54 NIRPDGIYIDGTFGRGGHSRLILSQLGEEGRLLAIDRDP----QAIAVAKTIDDPRFSIIHGPFSALGEYVAERDLIGKI 129 (347)
T ss_dssp CCCTTCEEEESCCTTSHHHHHHHTTCCTTCEEEEEESCH----HHHHHHTTCCCTTEEEEESCGGGHHHHHHHTTCTTCE
T ss_pred CCCCCCEEEEeCcCCCHHHHHHHHhCCCCCEEEEEECCH----HHHHHHHhhcCCcEEEEeCCHHHHHHHHHhcCCCCcc
Confidence 578999999999999999999999998899999999999 55555432 2689999999887654311 11369
Q ss_pred eEEEEeCC
Q 021911 215 DVIFSDVA 222 (305)
Q Consensus 215 D~V~~d~~ 222 (305)
|.|+.|..
T Consensus 130 DgILfDLG 137 (347)
T 3tka_A 130 DGILLDLG 137 (347)
T ss_dssp EEEEEECS
T ss_pred cEEEECCc
Confidence 99999876
|
| >3ufb_A Type I restriction-modification system methyltran subunit; methyltransferase activity, transferase; 1.80A {Vibrio vulnificus} | Back alignment and structure |
|---|
Probab=98.40 E-value=9.9e-07 Score=86.14 Aligned_cols=139 Identities=15% Similarity=0.036 Sum_probs=81.6
Q ss_pred CCCCCCEEEEEecCCCccHHHHHhhhCC------------CcEEEEEeCChHHHHHHH-HHH-HcCCCeEEEEccCCCCc
Q 021911 140 WIKPGARVLYLGAASGTTVSHVSDIVGP------------NGVVYAVEFSHRSGRDLV-NMA-KKRTNVIPIIEDARHPA 205 (305)
Q Consensus 140 ~~~~g~~VLDlG~G~G~~t~~la~~~~~------------~~~V~avD~s~~~~~~l~-~~a-~~~~nI~~~~~D~~~~~ 205 (305)
.+.++.+|+|.+||+|.+...+.+.+.. ...++++|+++...+-+. .+. .......+.+.|....+
T Consensus 214 ~p~~~~~I~DPacGsGgfL~~a~~~l~~~~~~~~~~~~~~~~~i~G~E~~~~~~~la~mNl~lhg~~~~~I~~~dtL~~~ 293 (530)
T 3ufb_A 214 DPQLGESVLDPACGTGGFLVEAFEHLERQCKTVEDREVLQESSIFGGEAKSLPYLLVQMNLLLHGLEYPRIDPENSLRFP 293 (530)
T ss_dssp CCCTTCCEEETTCTTTHHHHHHHHHHHTTCCSHHHHHHHHTCCEEEECCSHHHHHHHHHHHHHHTCSCCEEECSCTTCSC
T ss_pred ccCCCCEEEeCCCCcchHHHHHHHHHHHhccchhHHHHHhhhhhhhhhccHHHHHHHHHHHHhcCCccccccccccccCc
Confidence 5788899999999999999888775522 236999999984432211 111 11133445667765432
Q ss_pred cc-ccCCCcEeEEEEeCCCh-------------------hHHHHHHHHHhccCC-------CCcEEEEEEcccccCCCCc
Q 021911 206 KY-RMLVGMVDVIFSDVAQP-------------------DQARILALNASYFLK-------AGGHFVISIKANCIDSTVP 258 (305)
Q Consensus 206 ~~-~~~~~~fD~V~~d~~~~-------------------~~~~~l~~~a~~~Lk-------pGG~lv~s~~~~~i~~~~~ 258 (305)
.. ......||+|++|||.. .+...+. ++.++|| |+|++.+.++...+....
T Consensus 294 ~~~~~~~~~fD~Il~NPPf~~~~~~~~~~~~~~~~~~~~~~~~Fl~-~~l~~Lk~~~~~l~~gGr~avVlP~g~Lf~~~- 371 (530)
T 3ufb_A 294 LREMGDKDRVDVILTNPPFGGEEEKGILGNFPEDMQTAETAMLFLQ-LIMRKLKRPGHGSDNGGRAAVVVPNGTLFSDG- 371 (530)
T ss_dssp GGGCCGGGCBSEEEECCCSSCBCCHHHHTTSCGGGCCCBHHHHHHH-HHHHHBCCTTSSSSSCCEEEEEEEHHHHHCCT-
T ss_pred hhhhcccccceEEEecCCCCccccccccccCchhcccchhHHHHHH-HHHHHhhhhhhccCCCceEEEEecchhhhccc-
Confidence 11 11235799999999921 1222333 6666665 799999998543333221
Q ss_pred hhhhHHHHHHHHHHCCCcEeEEeecC
Q 021911 259 AEAVFQSEVKKLQQDQFKPFEQVTLE 284 (305)
Q Consensus 259 ~~~v~~~~~~~l~~~Gf~~~e~~~l~ 284 (305)
.+ ....++|.+. +.+..++.+.
T Consensus 372 ~~---~~iRk~Lle~-~~l~aII~LP 393 (530)
T 3ufb_A 372 IS---ARIKEELLKN-FNLHTIVRLP 393 (530)
T ss_dssp HH---HHHHHHHHHH-SEEEEEEECC
T ss_pred hH---HHHHHHHhhc-CEEEEEEECC
Confidence 11 1123444333 4566666654
|
| >2oyr_A UPF0341 protein YHIQ; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAH; 2.00A {Shigella flexneri 2A} SCOP: c.66.1.55 PDB: 2pgx_A 2pkw_A | Back alignment and structure |
|---|
Probab=98.33 E-value=3.3e-07 Score=81.42 Aligned_cols=80 Identities=16% Similarity=0.091 Sum_probs=58.0
Q ss_pred CCCCC--CEEEEEecCCCccHHHHHhhhCCCcEEEEEeCChHHHH---HHHHHHHcC--------CCeEEEEccCCCCcc
Q 021911 140 WIKPG--ARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGR---DLVNMAKKR--------TNVIPIIEDARHPAK 206 (305)
Q Consensus 140 ~~~~g--~~VLDlG~G~G~~t~~la~~~~~~~~V~avD~s~~~~~---~l~~~a~~~--------~nI~~~~~D~~~~~~ 206 (305)
.++++ .+|||++||+|..+..+|.. + ++|++||+++.... +.++.++.+ .+|++++.|+.+...
T Consensus 83 ~l~~g~~~~VLDl~~G~G~dal~lA~~-g--~~V~~vE~~~~~~~l~~~~l~~a~~~~~~~~~l~~~i~~~~~D~~~~L~ 159 (258)
T 2oyr_A 83 GIKGDYLPDVVDATAGLGRDAFVLASV-G--CRVRMLERNPVVAALLDDGLARGYADAEIGGWLQERLQLIHASSLTALT 159 (258)
T ss_dssp TCBTTBCCCEEETTCTTCHHHHHHHHH-T--CCEEEEECCHHHHHHHHHHHHHHHHCTTTHHHHHHHEEEEESCHHHHST
T ss_pred cccCCCCCEEEEcCCcCCHHHHHHHHc-C--CEEEEEECCHHHHHHHHHHHHHHHhhHhhhhhhhcCEEEEECCHHHHHH
Confidence 45667 89999999999999999997 2 47999999995422 223333211 368999999876432
Q ss_pred cccCCCcEeEEEEeCCCh
Q 021911 207 YRMLVGMVDVIFSDVAQP 224 (305)
Q Consensus 207 ~~~~~~~fD~V~~d~~~~ 224 (305)
. ....||+|++|++.+
T Consensus 160 ~--~~~~fDvV~lDP~y~ 175 (258)
T 2oyr_A 160 D--ITPRPQVVYLDPMFP 175 (258)
T ss_dssp T--CSSCCSEEEECCCCC
T ss_pred h--CcccCCEEEEcCCCC
Confidence 2 234799999999844
|
| >2k4m_A TR8_protein, UPF0146 protein MTH_1000; alpha+beta, rossman fold, structural genomics, PSI-2; NMR {Methanothermobacterthermautotrophicus str} | Back alignment and structure |
|---|
Probab=98.32 E-value=6.7e-07 Score=72.04 Aligned_cols=87 Identities=16% Similarity=0.209 Sum_probs=61.3
Q ss_pred CCCCCEEEEEecCCCc-cHHHHHhhhCCCcEEEEEeCChHHHHHHHHHHHcCCCeEEEEccCCCCcccccCCCcEeEEEE
Q 021911 141 IKPGARVLYLGAASGT-TVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKRTNVIPIIEDARHPAKYRMLVGMVDVIFS 219 (305)
Q Consensus 141 ~~~g~~VLDlG~G~G~-~t~~la~~~~~~~~V~avD~s~~~~~~l~~~a~~~~nI~~~~~D~~~~~~~~~~~~~fD~V~~ 219 (305)
..+..+|||+|||+|. .+..|++.. ...|+++|+++.++. +++.|+.++... ....||+|.+
T Consensus 33 ~~~~~rVlEVG~G~g~~vA~~La~~~--g~~V~atDInp~Av~-------------~v~dDiF~P~~~--~Y~~~DLIYs 95 (153)
T 2k4m_A 33 SGPGTRVVEVGAGRFLYVSDYIRKHS--KVDLVLTDIKPSHGG-------------IVRDDITSPRME--IYRGAALIYS 95 (153)
T ss_dssp SCSSSEEEEETCTTCCHHHHHHHHHS--CCEEEEECSSCSSTT-------------EECCCSSSCCHH--HHTTEEEEEE
T ss_pred CCCCCcEEEEccCCChHHHHHHHHhC--CCeEEEEECCccccc-------------eEEccCCCCccc--ccCCcCEEEE
Confidence 3456899999999995 899999853 468999999994322 888999886532 1258999965
Q ss_pred -eCCChhHHHHHHHHHhccCCCCcEEEEEE
Q 021911 220 -DVAQPDQARILALNASYFLKAGGHFVISI 248 (305)
Q Consensus 220 -d~~~~~~~~~l~~~a~~~LkpGG~lv~s~ 248 (305)
++|...|..++. -|. . -+.-|+|..
T Consensus 96 irPP~El~~~i~~-lA~-~--v~adliI~p 121 (153)
T 2k4m_A 96 IRPPAEIHSSLMR-VAD-A--VGARLIIKP 121 (153)
T ss_dssp ESCCTTTHHHHHH-HHH-H--HTCEEEEEC
T ss_pred cCCCHHHHHHHHH-HHH-H--cCCCEEEEc
Confidence 666667776665 332 2 344566664
|
| >3g7u_A Cytosine-specific methyltransferase; DNA-binding, NAD-binding, structural GENO protein structure initiative, PSI; 1.75A {Escherichia coli O157} | Back alignment and structure |
|---|
Probab=98.27 E-value=1e-05 Score=75.58 Aligned_cols=145 Identities=15% Similarity=0.093 Sum_probs=93.7
Q ss_pred CEEEEEecCCCccHHHHHhhhCCCcEEEEEeCChHHHHHHHHHHHcC-CCeEEEEccCCCCccccc-----CCCcEeEEE
Q 021911 145 ARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKR-TNVIPIIEDARHPAKYRM-----LVGMVDVIF 218 (305)
Q Consensus 145 ~~VLDlG~G~G~~t~~la~~~~~~~~V~avD~s~~~~~~l~~~a~~~-~nI~~~~~D~~~~~~~~~-----~~~~fD~V~ 218 (305)
.+||||+||.|.++.-+.+. + --.|.++|+++.+ .+..+.+ ++..+++.|+.+...... ....+|+|+
T Consensus 3 ~~vidLFsG~GGlslG~~~a-G-~~~v~avE~d~~a----~~t~~~N~~~~~~~~~DI~~~~~~~~~~~~~~~~~~D~i~ 76 (376)
T 3g7u_A 3 LNVIDLFSGVGGLSLGAARA-G-FDVKMAVEIDQHA----INTHAINFPRSLHVQEDVSLLNAEIIKGFFKNDMPIDGII 76 (376)
T ss_dssp CEEEEETCTTSHHHHHHHHH-T-CEEEEEECSCHHH----HHHHHHHCTTSEEECCCGGGCCHHHHHHHHCSCCCCCEEE
T ss_pred CeEEEEccCcCHHHHHHHHC-C-CcEEEEEeCCHHH----HHHHHHhCCCCceEecChhhcCHHHHHhhcccCCCeeEEE
Confidence 58999999999999998876 2 3367899999944 3333333 567888999987643221 235899999
Q ss_pred EeCCCh-----------hHH-HHHH--HHHhccCCCCcEEEEEEcccccCCCCchhhhHHHHHHHHHHCCCcE-eE-Eee
Q 021911 219 SDVAQP-----------DQA-RILA--LNASYFLKAGGHFVISIKANCIDSTVPAEAVFQSEVKKLQQDQFKP-FE-QVT 282 (305)
Q Consensus 219 ~d~~~~-----------~~~-~~l~--~~a~~~LkpGG~lv~s~~~~~i~~~~~~~~v~~~~~~~l~~~Gf~~-~e-~~~ 282 (305)
.++||. +.. .++. ..+...++|. +|++.-. .-+.+ .....++...+ .|++.||.+ .. ++.
T Consensus 77 ggpPCQ~fS~ag~~~~~d~r~~L~~~~~~~v~~~~P~-~~v~ENV-~gl~s-~~~~~~~~~i~-~l~~~GY~v~~~~vl~ 152 (376)
T 3g7u_A 77 GGPPCQGFSSIGKGNPDDSRNQLYMHFYRLVSELQPL-FFLAENV-PGIMQ-EKYSGIRNKAF-NLVSGDYDILDPIKVK 152 (376)
T ss_dssp ECCCCCTTC-------CHHHHHHHHHHHHHHHHHCCS-EEEEEEC-TTTTC-GGGHHHHHHHH-HHHHTTEEECCCEEEE
T ss_pred ecCCCCCcccccCCCCCCchHHHHHHHHHHHHHhCCC-EEEEecc-hHhhc-cCcHHHHHHHH-HHHcCCCccCcEEEEE
Confidence 999963 112 1221 1345567896 4444421 11211 22334556666 888999988 32 333
Q ss_pred ---c-CCCCCceEEEEEEEcC
Q 021911 283 ---L-EPFERDHACVVGGYRM 299 (305)
Q Consensus 283 ---l-~p~~~~~~~vv~~~~~ 299 (305)
+ -|..|..+++||.++-
T Consensus 153 a~dyGvPQ~R~R~~iig~r~~ 173 (376)
T 3g7u_A 153 ASDYGAPTIRTRYFFIGVKKS 173 (376)
T ss_dssp GGGGTCSBCCEEEEEEEEEGG
T ss_pred HhhCCCCCCCcEEEEEEEeCC
Confidence 3 5677899999998654
|
| >2wk1_A NOVP; transferase, O-methyltransferase, novobiocin, TYLF superfamily; HET: SAH; 1.40A {Streptomyces caeruleus} | Back alignment and structure |
|---|
Probab=98.20 E-value=8.1e-06 Score=73.27 Aligned_cols=104 Identities=12% Similarity=0.055 Sum_probs=73.6
Q ss_pred CCCEEEEEecCCCccHHHHHhhhC----CCcEEEEEeCChH--------------------------HHHHHHHHHHcC-
Q 021911 143 PGARVLYLGAASGTTVSHVSDIVG----PNGVVYAVEFSHR--------------------------SGRDLVNMAKKR- 191 (305)
Q Consensus 143 ~g~~VLDlG~G~G~~t~~la~~~~----~~~~V~avD~s~~--------------------------~~~~l~~~a~~~- 191 (305)
....|||+|+..|..++.+|..+. +..+|+++|..+. ....+.++.++.
T Consensus 106 ~pg~IlEiGv~~G~Sai~ma~~l~~~g~~~~kI~~~DtfeG~pe~~~~~~~~d~~~~~~~~~~~~~~~~~~ar~n~~~~g 185 (282)
T 2wk1_A 106 VPGDLVETGVWRGGACILMRGILRAHDVRDRTVWVADSFQGIPDVGEDGYAGDRKMALHRRNSVLAVSEEEVRRNFRNYD 185 (282)
T ss_dssp CCCEEEEECCTTSHHHHHHHHHHHHTTCCSCCEEEEECSSCSCCCCTTSCHHHHHHCGGGGHHHHCCCHHHHHHHHHHTT
T ss_pred CCCcEEEeecCchHHHHHHHHHhHhcCCCCCEEEEEECCCCCCcccccccccccccccccccccchhHHHHHHHHHHHcC
Confidence 346999999999999999988763 3678999996310 112223333321
Q ss_pred ---CCeEEEEccCCCCcccccCCCcEeEEEEeCCChh-HHHHHHHHHhccCCCCcEEEEEE
Q 021911 192 ---TNVIPIIEDARHPAKYRMLVGMVDVIFSDVAQPD-QARILALNASYFLKAGGHFVISI 248 (305)
Q Consensus 192 ---~nI~~~~~D~~~~~~~~~~~~~fD~V~~d~~~~~-~~~~l~~~a~~~LkpGG~lv~s~ 248 (305)
++|+++..|+.+..+. ....+||+|++|..... ....|. .+...|+|||.+++-.
T Consensus 186 l~~~~I~li~Gda~etL~~-~~~~~~d~vfIDaD~y~~~~~~Le-~~~p~L~pGGiIv~DD 244 (282)
T 2wk1_A 186 LLDEQVRFLPGWFKDTLPT-APIDTLAVLRMDGDLYESTWDTLT-NLYPKVSVGGYVIVDD 244 (282)
T ss_dssp CCSTTEEEEESCHHHHSTT-CCCCCEEEEEECCCSHHHHHHHHH-HHGGGEEEEEEEEESS
T ss_pred CCcCceEEEEeCHHHHHhh-CCCCCEEEEEEcCCccccHHHHHH-HHHhhcCCCEEEEEcC
Confidence 6899999998654322 12468999999998644 345565 8999999999888754
|
| >1g55_A DNA cytosine methyltransferase DNMT2; human DNA methyltransferase homologue; HET: DNA SAH; 1.80A {Homo sapiens} SCOP: c.66.1.26 | Back alignment and structure |
|---|
Probab=98.18 E-value=1.9e-05 Score=72.93 Aligned_cols=144 Identities=13% Similarity=0.066 Sum_probs=90.9
Q ss_pred CEEEEEecCCCccHHHHHhhhCC-CcEEEEEeCChHHHHHHHHHHHcC-CCeEEEEccCCCCcccccCCCcEeEEEEeCC
Q 021911 145 ARVLYLGAASGTTVSHVSDIVGP-NGVVYAVEFSHRSGRDLVNMAKKR-TNVIPIIEDARHPAKYRMLVGMVDVIFSDVA 222 (305)
Q Consensus 145 ~~VLDlG~G~G~~t~~la~~~~~-~~~V~avD~s~~~~~~l~~~a~~~-~nI~~~~~D~~~~~~~~~~~~~fD~V~~d~~ 222 (305)
.+||||+||.|.++..+... +- ...|+++|+++.++ +..+.+ ++..+++.|+++..........+|+|+.++|
T Consensus 3 ~~v~dLFaG~Gg~~~g~~~~-G~~~~~v~~~E~d~~a~----~~~~~N~~~~~~~~~Di~~~~~~~~~~~~~D~l~~gpP 77 (343)
T 1g55_A 3 LRVLELYSGVGGMHHALRES-CIPAQVVAAIDVNTVAN----EVYKYNFPHTQLLAKTIEGITLEEFDRLSFDMILMSPP 77 (343)
T ss_dssp EEEEEETCTTCHHHHHHHHH-TCSEEEEEEECCCHHHH----HHHHHHCTTSCEECSCGGGCCHHHHHHHCCSEEEECCC
T ss_pred CeEEEeCcCccHHHHHHHHC-CCCceEEEEEeCCHHHH----HHHHHhccccccccCCHHHccHhHcCcCCcCEEEEcCC
Confidence 58999999999999998876 21 23699999999443 333333 4556788899876532111126999999999
Q ss_pred Chh------------HH-HHHH--HHHhccCC--CCcEEEEEEcccccCCCCchhhhHHHHHHHHHHCCCcEeEEe----
Q 021911 223 QPD------------QA-RILA--LNASYFLK--AGGHFVISIKANCIDSTVPAEAVFQSEVKKLQQDQFKPFEQV---- 281 (305)
Q Consensus 223 ~~~------------~~-~~l~--~~a~~~Lk--pGG~lv~s~~~~~i~~~~~~~~v~~~~~~~l~~~Gf~~~e~~---- 281 (305)
|.. .. .++. ..+...++ |. ++++.-. .++.. ...+...++.|++.||.+...+
T Consensus 78 Cq~fS~ag~~~g~~d~r~~l~~~~~~~i~~~~~~P~-~~~~ENV-~~l~~----~~~~~~i~~~l~~~GY~v~~~vl~a~ 151 (343)
T 1g55_A 78 CQPFTRIGRQGDMTDSRTNSFLHILDILPRLQKLPK-YILLENV-KGFEV----SSTRDLLIQTIENCGFQYQEFLLSPT 151 (343)
T ss_dssp ------------------CHHHHHHHHGGGCSSCCS-EEEEEEE-TTGGG----SHHHHHHHHHHHHTTEEEEEEEECGG
T ss_pred CcchhhcCCcCCccCccchHHHHHHHHHHHhcCCCC-EEEEeCC-ccccC----HHHHHHHHHHHHHCCCeeEEEEEEHH
Confidence 531 11 1121 13445566 76 4444321 12221 2345666788889999886543
Q ss_pred ec-CCCCCceEEEEEEEcC
Q 021911 282 TL-EPFERDHACVVGGYRM 299 (305)
Q Consensus 282 ~l-~p~~~~~~~vv~~~~~ 299 (305)
++ -|..|..+++||.+..
T Consensus 152 ~~GvPQ~R~R~~iv~~~~~ 170 (343)
T 1g55_A 152 SLGIPNSRLRYFLIAKLQS 170 (343)
T ss_dssp GGTCSCCCCEEEEEEEESS
T ss_pred HCCCCCcccEEEEEEEeCC
Confidence 23 5778999999998754
|
| >1wg8_A Predicted S-adenosylmethionine-dependent methyltransferase; S-adenosyl-methyltransferase, MRAW; HET: SAM; 2.00A {Thermus thermophilus} SCOP: a.60.13.1 c.66.1.23 | Back alignment and structure |
|---|
Probab=98.08 E-value=1.1e-05 Score=72.00 Aligned_cols=78 Identities=14% Similarity=0.153 Sum_probs=62.4
Q ss_pred CCCCCCEEEEEecCCCccHHHHHhhhCCCcEEEEEeCChHHHHHHHHHHHcCCCeEEEEccCCCCcccc--cCCCcEeEE
Q 021911 140 WIKPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKRTNVIPIIEDARHPAKYR--MLVGMVDVI 217 (305)
Q Consensus 140 ~~~~g~~VLDlG~G~G~~t~~la~~~~~~~~V~avD~s~~~~~~l~~~a~~~~nI~~~~~D~~~~~~~~--~~~~~fD~V 217 (305)
.++++..+||++||.|..+..|++. .++|+++|.++.++..+.+ ++. +++++++.|+.++..+. ....+||.|
T Consensus 19 ~~~~gg~~VD~T~G~GGHS~~il~~---~g~VigiD~Dp~Ai~~A~~-L~~-~rv~lv~~~f~~l~~~L~~~g~~~vDgI 93 (285)
T 1wg8_A 19 AVRPGGVYVDATLGGAGHARGILER---GGRVIGLDQDPEAVARAKG-LHL-PGLTVVQGNFRHLKRHLAALGVERVDGI 93 (285)
T ss_dssp TCCTTCEEEETTCTTSHHHHHHHHT---TCEEEEEESCHHHHHHHHH-TCC-TTEEEEESCGGGHHHHHHHTTCSCEEEE
T ss_pred CCCCCCEEEEeCCCCcHHHHHHHHC---CCEEEEEeCCHHHHHHHHh-hcc-CCEEEEECCcchHHHHHHHcCCCCcCEE
Confidence 5788999999999999999999997 4699999999966555444 333 68999999998875431 122589999
Q ss_pred EEeCC
Q 021911 218 FSDVA 222 (305)
Q Consensus 218 ~~d~~ 222 (305)
++|..
T Consensus 94 L~DLG 98 (285)
T 1wg8_A 94 LADLG 98 (285)
T ss_dssp EEECS
T ss_pred EeCCc
Confidence 99886
|
| >3ubt_Y Modification methylase HAEIII; protein-DNA complex, DNA cytosine-5 methyltransferase, DNA B S-adenosyl methionine binding; HET: ATP 2PE; 2.50A {Haemophilus aegyptius} PDB: 1dct_A* | Back alignment and structure |
|---|
Probab=98.00 E-value=6.5e-05 Score=68.44 Aligned_cols=144 Identities=10% Similarity=0.076 Sum_probs=92.3
Q ss_pred CEEEEEecCCCccHHHHHhhhCCCcEEEEEeCChHHHHHHHHHHHcCCCeEEEEccCCCCcccccCCCcEeEEEEeCCCh
Q 021911 145 ARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKRTNVIPIIEDARHPAKYRMLVGMVDVIFSDVAQP 224 (305)
Q Consensus 145 ~~VLDlG~G~G~~t~~la~~~~~~~~V~avD~s~~~~~~l~~~a~~~~nI~~~~~D~~~~~~~~~~~~~fD~V~~d~~~~ 224 (305)
++||||.||.|.++.-+-+. + --.|.++|+++.+ .+..+.+-.-.++..|+++..... ...+|+|+..+||.
T Consensus 1 mkvidLFsG~GG~~~G~~~a-G-~~~v~a~e~d~~a----~~ty~~N~~~~~~~~DI~~i~~~~--~~~~D~l~ggpPCQ 72 (331)
T 3ubt_Y 1 MNLISLFSGAGGLDLGFQKA-G-FRIICANEYDKSI----WKTYESNHSAKLIKGDISKISSDE--FPKCDGIIGGPPSQ 72 (331)
T ss_dssp CEEEEESCTTCHHHHHHHHT-T-CEEEEEEECCTTT----HHHHHHHCCSEEEESCGGGCCGGG--SCCCSEEECCCCGG
T ss_pred CeEEEeCcCccHHHHHHHHC-C-CEEEEEEeCCHHH----HHHHHHHCCCCcccCChhhCCHhh--CCcccEEEecCCCC
Confidence 57999999999999887665 3 2368899999944 333333323467889998875432 35799999988852
Q ss_pred ------------hHH-HHHH--HHHhccCCCCcEEEEEEcccccCCCCchhhhHHHHHHHHHHCCCcEeEEe-ec----C
Q 021911 225 ------------DQA-RILA--LNASYFLKAGGHFVISIKANCIDSTVPAEAVFQSEVKKLQQDQFKPFEQV-TL----E 284 (305)
Q Consensus 225 ------------~~~-~~l~--~~a~~~LkpGG~lv~s~~~~~i~~~~~~~~v~~~~~~~l~~~Gf~~~e~~-~l----~ 284 (305)
|.. .++. .++.+.++|. +|++.-... +.+ ......+...++.|++.||.+...+ +. -
T Consensus 73 ~fS~ag~~~g~~d~R~~L~~~~~r~i~~~~Pk-~~~~ENV~g-l~~-~~~~~~~~~i~~~l~~~GY~v~~~vlna~~yGv 149 (331)
T 3ubt_Y 73 SWSEGGSLRGIDDPRGKLFYEYIRILKQKKPI-FFLAENVKG-MMA-QRHNKAVQEFIQEFDNAGYDVHIILLNANDYGV 149 (331)
T ss_dssp GTEETTEECCTTCGGGHHHHHHHHHHHHHCCS-EEEEEECCG-GGG-CTTSHHHHHHHHHHHHHTEEEEEEEEEGGGTTC
T ss_pred CcCCCCCccCCCCchhHHHHHHHHHHhccCCe-EEEeeeecc-ccc-ccccchhhhhhhhhccCCcEEEEEecccccCCC
Confidence 111 1221 1345567896 555543111 111 1223456666788888899876543 22 4
Q ss_pred CCCCceEEEEEEEcC
Q 021911 285 PFERDHACVVGGYRM 299 (305)
Q Consensus 285 p~~~~~~~vv~~~~~ 299 (305)
|..|..+++||.++.
T Consensus 150 PQ~R~Rvfivg~r~~ 164 (331)
T 3ubt_Y 150 AQDRKRVFYIGFRKE 164 (331)
T ss_dssp SBCCEEEEEEEEEGG
T ss_pred CcccceEEEEEEcCC
Confidence 678899999998753
|
| >2c7p_A Modification methylase HHAI; DNA methyltransferase, methyltransferase, base flipping, restriction system, transferase; HET: 5CM A1P SAH EPE CIT; 1.7A {Haemophilus haemolyticus} SCOP: c.66.1.26 PDB: 10mh_A* 1m0e_A* 1mht_A* 1hmy_A* 1skm_A* 2c7o_A* 2c7q_A* 2hmy_B* 2hr1_A* 3eeo_A* 3mht_A* 4mht_A* 5mht_A* 6mht_A* 7mht_A* 8mht_A* 9mht_A* 2zcj_A* 2z6u_A* 2z6q_A* ... | Back alignment and structure |
|---|
Probab=97.96 E-value=0.00019 Score=65.64 Aligned_cols=142 Identities=13% Similarity=0.048 Sum_probs=90.8
Q ss_pred CCEEEEEecCCCccHHHHHhhhCCCcEEEEEeCChHHHHHHHHHHHcCCCeEEEEccCCCCcccccCCCcEeEEEEeCCC
Q 021911 144 GARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKRTNVIPIIEDARHPAKYRMLVGMVDVIFSDVAQ 223 (305)
Q Consensus 144 g~~VLDlG~G~G~~t~~la~~~~~~~~V~avD~s~~~~~~l~~~a~~~~nI~~~~~D~~~~~~~~~~~~~fD~V~~d~~~ 223 (305)
..+||||+||.|.++..+... + --.|+++|+++.+......+.. ... +.|+++..... ...+|+|+..+||
T Consensus 11 ~~~~~dLFaG~Gg~~~g~~~a-G-~~~v~~~e~d~~a~~t~~~N~~---~~~--~~Di~~~~~~~--~~~~D~l~~gpPC 81 (327)
T 2c7p_A 11 GLRFIDLFAGLGGFRLALESC-G-AECVYSNEWDKYAQEVYEMNFG---EKP--EGDITQVNEKT--IPDHDILCAGFPC 81 (327)
T ss_dssp TCEEEEETCTTTHHHHHHHHT-T-CEEEEEECCCHHHHHHHHHHHS---CCC--BSCGGGSCGGG--SCCCSEEEEECCC
T ss_pred CCcEEEECCCcCHHHHHHHHC-C-CeEEEEEeCCHHHHHHHHHHcC---CCC--cCCHHHcCHhh--CCCCCEEEECCCC
Confidence 579999999999999998876 3 3468999999955444333332 221 68887765432 2469999999995
Q ss_pred h------------h----HHHHHHHHHhccCCCCcEEEEEEcccccCCCCchhhhHHHHHHHHHHCCCcEeEEe----ec
Q 021911 224 P------------D----QARILALNASYFLKAGGHFVISIKANCIDSTVPAEAVFQSEVKKLQQDQFKPFEQV----TL 283 (305)
Q Consensus 224 ~------------~----~~~~l~~~a~~~LkpGG~lv~s~~~~~i~~~~~~~~v~~~~~~~l~~~Gf~~~e~~----~l 283 (305)
. + ...-+. .+...++|. ++++.-.. -+.+ ......|...++.|++.||.+...+ ++
T Consensus 82 Q~fS~ag~~~g~~d~r~~L~~~~~-r~i~~~~P~-~~~~ENV~-gl~~-~~~~~~~~~i~~~l~~~GY~v~~~vl~a~~~ 157 (327)
T 2c7p_A 82 QAFSISGKQKGFEDSRGTLFFDIA-RIVREKKPK-VVFMENVK-NFAS-HDNGNTLEVVKNTMNELDYSFHAKVLNALDY 157 (327)
T ss_dssp TTTCTTSCCCGGGSTTSCHHHHHH-HHHHHHCCS-EEEEEEEG-GGGT-GGGGHHHHHHHHHHHHTTBCCEEEEEEGGGG
T ss_pred CCcchhcccCCCcchhhHHHHHHH-HHHHhccCc-EEEEeCcH-HHHh-ccccHHHHHHHHHHHhCCCEEEEEEEEHHHc
Confidence 2 1 111122 344557886 44444211 1111 1223456666788889999876543 23
Q ss_pred -CCCCCceEEEEEEEc
Q 021911 284 -EPFERDHACVVGGYR 298 (305)
Q Consensus 284 -~p~~~~~~~vv~~~~ 298 (305)
-|..|..+++||...
T Consensus 158 GvPQ~R~R~~iv~~~~ 173 (327)
T 2c7p_A 158 GIPQKRERIYMICFRN 173 (327)
T ss_dssp TCSBCCEEEEEEEEBG
T ss_pred CCCccceEEEEEEEeC
Confidence 567899999999875
|
| >3b5i_A S-adenosyl-L-methionine:salicylic acid carboxyl methyltransferase-like protein; sabath family, indole-3-acetic acid, S-AD methionine; HET: SAH; 2.75A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=97.91 E-value=4.1e-05 Score=71.41 Aligned_cols=105 Identities=16% Similarity=0.203 Sum_probs=66.3
Q ss_pred CCEEEEEecCCCccHHHHHhhh--------------CCCcEEEEEeCChHHHHHHHHHHHcC-C-------------CeE
Q 021911 144 GARVLYLGAASGTTVSHVSDIV--------------GPNGVVYAVEFSHRSGRDLVNMAKKR-T-------------NVI 195 (305)
Q Consensus 144 g~~VLDlG~G~G~~t~~la~~~--------------~~~~~V~avD~s~~~~~~l~~~a~~~-~-------------nI~ 195 (305)
..+|+|+||++|..|+.+++.+ .|..+|+-.|+...--..+.+..... . +-.
T Consensus 53 ~~~IaDlGCssG~Nt~~~v~~ii~~i~~~~~~~~~~~pe~~v~~nDLp~NDFn~lF~~L~~~~~~~~~~~~~~~~~~~~~ 132 (374)
T 3b5i_A 53 PFTAVDLGCSSGANTVHIIDFIVKHISKRFDAAGIDPPEFTAFFSDLPSNDFNTLFQLLPPLVSNTCMEECLAADGNRSY 132 (374)
T ss_dssp CEEEEEETCCSSHHHHHHHHHHHHHHHHHHHHTTCCCCCEEEEEEECTTSCHHHHHHHSCCBCCCC--CCC---CCCBCS
T ss_pred ceEEEecCCCCChhHHHHHHHHHHHHHHHHhhcCCCCCceeEEecCCCccchHHHHhhhhhhhhhcchhhhccccCCCce
Confidence 5899999999999998884332 15678888888653222332222210 0 112
Q ss_pred EEEccCCCCcccccCCCcEeEEEEeCCC------h-----------------------------------hHHHHHHHHH
Q 021911 196 PIIEDARHPAKYRMLVGMVDVIFSDVAQ------P-----------------------------------DQARILALNA 234 (305)
Q Consensus 196 ~~~~D~~~~~~~~~~~~~fD~V~~d~~~------~-----------------------------------~~~~~l~~~a 234 (305)
++.+....+....++..+||+|+++.+. | |...+|. ..
T Consensus 133 f~~gvpgSFy~rlfP~~S~d~v~Ss~aLHWls~~p~~l~~~~~~~~nkg~i~~~~~~~~v~~ay~~Qf~~D~~~fL~-~r 211 (374)
T 3b5i_A 133 FVAGVPGSFYRRLFPARTIDFFHSAFSLHWLSQVPESVTDRRSAAYNRGRVFIHGAGEKTTTAYKRQFQADLAEFLR-AR 211 (374)
T ss_dssp EEEEEESCTTSCCSCTTCEEEEEEESCTTBCSSCCGGGGCTTSTTCCTTTSSSSSCCHHHHHHHHHHHHHHHHHHHH-HH
T ss_pred EEEecChhhhcccCCCcceEEEEecceeeeeccCchhhhccccccccCCceEeCCCCHHHHHHHHHHHHHHHHHHHH-HH
Confidence 4444444333333456799999997771 1 2233454 77
Q ss_pred hccCCCCcEEEEEEc
Q 021911 235 SYFLKAGGHFVISIK 249 (305)
Q Consensus 235 ~~~LkpGG~lv~s~~ 249 (305)
++.|+|||+|++++.
T Consensus 212 a~eL~pGG~mvl~~~ 226 (374)
T 3b5i_A 212 AAEVKRGGAMFLVCL 226 (374)
T ss_dssp HHHEEEEEEEEEEEE
T ss_pred HHHhCCCCEEEEEEe
Confidence 899999999999984
|
| >2efj_A 3,7-dimethylxanthine methyltransferase; SAM-dependant methyltransferase, SAH, theobromine; HET: SAH 37T; 2.00A {Coffea canephora} PDB: 2eg5_A* | Back alignment and structure |
|---|
Probab=97.79 E-value=0.00024 Score=66.40 Aligned_cols=79 Identities=13% Similarity=-0.000 Sum_probs=51.5
Q ss_pred CCEEEEEecCCCccHHHHHhhh----------------CCCcEEEEEeCCh-------HHHHHHHHHHHc-C---CCeEE
Q 021911 144 GARVLYLGAASGTTVSHVSDIV----------------GPNGVVYAVEFSH-------RSGRDLVNMAKK-R---TNVIP 196 (305)
Q Consensus 144 g~~VLDlG~G~G~~t~~la~~~----------------~~~~~V~avD~s~-------~~~~~l~~~a~~-~---~nI~~ 196 (305)
..+|+|+||++|..|+.+.+.+ .|..+|+..|+.. +.+..+.+.+.+ . .+-.+
T Consensus 53 ~~~IaDlGCssG~NT~~~v~~ii~~i~~~~~~~~~~~~~pe~~v~~nDLp~NDFN~lF~~L~~~~~~~~~~~g~~~~~~f 132 (384)
T 2efj_A 53 CFKVGDLGCASGPNTFSTVRDIVQSIDKVGQEKKNELERPTIQIFLNDLFQNDFNSVFKLLPSFYRNLEKENGRKIGSCL 132 (384)
T ss_dssp EEEEEEETCCSSHHHHHHHHHHHHHHTCC----------CEEEEEEECCTTSCHHHHHHHHHHHHHHHHHHTCCCTTSEE
T ss_pred ceEEEecCCCCCchHHHHHHHHHHHHHHHhhhcccCCCCCceEEEecCCCccchHHHHhhhhhhHhhhhhhccCCCCceE
Confidence 4799999999999998887661 1456788888761 111122222211 1 23577
Q ss_pred EEccCCCCcccccCCCcEeEEEEeCC
Q 021911 197 IIEDARHPAKYRMLVGMVDVIFSDVA 222 (305)
Q Consensus 197 ~~~D~~~~~~~~~~~~~fD~V~~d~~ 222 (305)
+.+....+....++..+||+|+++.+
T Consensus 133 ~~gvpgSFy~rlfp~~S~d~v~Ss~a 158 (384)
T 2efj_A 133 IGAMPGSFYSRLFPEESMHFLHSCYC 158 (384)
T ss_dssp EEECCSCTTSCCSCTTCEEEEEEESC
T ss_pred EEecchhhhhccCCCCceEEEEecce
Confidence 77777666544455689999999776
|
| >4h0n_A DNMT2; SAH binding, transferase; HET: SAH; 2.71A {Spodoptera frugiperda} | Back alignment and structure |
|---|
Probab=97.76 E-value=0.00038 Score=63.88 Aligned_cols=144 Identities=15% Similarity=0.072 Sum_probs=91.0
Q ss_pred CEEEEEecCCCccHHHHHhhhCCC-cEEEEEeCChHHHHHHHHHHHcC-CCeEEEEccCCCCcccccCCCcEeEEEEeCC
Q 021911 145 ARVLYLGAASGTTVSHVSDIVGPN-GVVYAVEFSHRSGRDLVNMAKKR-TNVIPIIEDARHPAKYRMLVGMVDVIFSDVA 222 (305)
Q Consensus 145 ~~VLDlG~G~G~~t~~la~~~~~~-~~V~avD~s~~~~~~l~~~a~~~-~nI~~~~~D~~~~~~~~~~~~~fD~V~~d~~ 222 (305)
.++|||+||.|.++.-+.+. +-. -.|.++|+++.+ .+..+.+ ++..++..|+++..........+|+|+..+|
T Consensus 4 ~~~idLFaG~GG~~~G~~~a-G~~~~~v~a~e~d~~a----~~ty~~N~~~~~~~~~DI~~~~~~~~~~~~~D~l~ggpP 78 (333)
T 4h0n_A 4 HKILELYSGIGGMHCAWKES-GLDGEIVAAVDINTVA----NSVYKHNFPETNLLNRNIQQLTPQVIKKWNVDTILMSPP 78 (333)
T ss_dssp EEEEEETCTTTHHHHHHHHH-TCSEEEEEEECCCHHH----HHHHHHHCTTSCEECCCGGGCCHHHHHHTTCCEEEECCC
T ss_pred CEEEEECcCccHHHHHHHHc-CCCceEEEEEeCCHHH----HHHHHHhCCCCceeccccccCCHHHhccCCCCEEEecCC
Confidence 47999999999999988775 221 358899999944 3333333 4556778898876543222236999999998
Q ss_pred Ch------------h----HHHHHHHHHhccCC-CCcEEEEEEcccccCCCCchhhhHHHHHHHHHHCCCcEeEEe-e--
Q 021911 223 QP------------D----QARILALNASYFLK-AGGHFVISIKANCIDSTVPAEAVFQSEVKKLQQDQFKPFEQV-T-- 282 (305)
Q Consensus 223 ~~------------~----~~~~l~~~a~~~Lk-pGG~lv~s~~~~~i~~~~~~~~v~~~~~~~l~~~Gf~~~e~~-~-- 282 (305)
|. + ...-+. .+...++ |. ++++.-.. -+.. ...+...++.|++.||.+...+ +
T Consensus 79 CQ~fS~ag~~~~~~d~r~~L~~~~~-r~i~~~~~P~-~~vlENV~-gl~~----~~~~~~i~~~l~~~GY~v~~~vl~a~ 151 (333)
T 4h0n_A 79 CQPFTRNGKYLDDNDPRTNSFLYLI-GILDQLDNVD-YILMENVK-GFEN----STVRNLFIDKLKECNFIYQEFLLCPS 151 (333)
T ss_dssp CCCSEETTEECCTTCTTSCCHHHHH-HHGGGCTTCC-EEEEEECT-TGGG----SHHHHHHHHHHHHTTEEEEEEEECTT
T ss_pred CcchhhhhhccCCcCcccccHHHHH-HHHHHhcCCC-EEEEecch-hhhh----hhHHHHHHHHHHhCCCeEEEEEecHH
Confidence 53 1 111122 3445565 85 44443211 1111 1234556778889999987654 2
Q ss_pred -c-CCCCCceEEEEEEEcCC
Q 021911 283 -L-EPFERDHACVVGGYRMP 300 (305)
Q Consensus 283 -l-~p~~~~~~~vv~~~~~~ 300 (305)
+ -|..|..+++||.....
T Consensus 152 ~~GvPQ~R~R~fiva~r~~~ 171 (333)
T 4h0n_A 152 TVGVPNSRLRYYCTARRNNL 171 (333)
T ss_dssp TTTCSCCCCEEEEEEEETTS
T ss_pred HcCCCccceEEEEEEEeCCC
Confidence 2 56779999999988763
|
| >2oo3_A Protein involved in catabolism of external DNA; structural genomics, unknown function, PSI-2, protein structure initiative; 2.00A {Legionella pneumophila subsp} SCOP: c.66.1.59 | Back alignment and structure |
|---|
Probab=97.62 E-value=1.3e-05 Score=71.69 Aligned_cols=102 Identities=13% Similarity=0.025 Sum_probs=70.8
Q ss_pred CCEEEEEecCCCccHHHHHhhhCCCcEEEEEeCChHHHHHHHHHHHcCCCeEEEEccCCCCcc-cccCCCcEeEEEEeCC
Q 021911 144 GARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKRTNVIPIIEDARHPAK-YRMLVGMVDVIFSDVA 222 (305)
Q Consensus 144 g~~VLDlG~G~G~~t~~la~~~~~~~~V~avD~s~~~~~~l~~~a~~~~nI~~~~~D~~~~~~-~~~~~~~fD~V~~d~~ 222 (305)
+..+||+.+|||..+..+.+. ..+++.||.++...+.+.++.+...+++++..|+..... .......||+||+|+|
T Consensus 92 ~~~~LDlfaGSGaLgiEaLS~---~d~~vfvE~~~~a~~~L~~Nl~~~~~~~V~~~D~~~~L~~l~~~~~~fdLVfiDPP 168 (283)
T 2oo3_A 92 LNSTLSYYPGSPYFAINQLRS---QDRLYLCELHPTEYNFLLKLPHFNKKVYVNHTDGVSKLNALLPPPEKRGLIFIDPS 168 (283)
T ss_dssp SSSSCCEEECHHHHHHHHSCT---TSEEEEECCSHHHHHHHTTSCCTTSCEEEECSCHHHHHHHHCSCTTSCEEEEECCC
T ss_pred CCCceeEeCCcHHHHHHHcCC---CCeEEEEeCCHHHHHHHHHHhCcCCcEEEEeCcHHHHHHHhcCCCCCccEEEECCC
Confidence 456899999999999998874 258999999996655555555444679999999744322 1111247999999999
Q ss_pred Ch---hHHHHHH-HHHhccCCCCcEEEEEE
Q 021911 223 QP---DQARILA-LNASYFLKAGGHFVISI 248 (305)
Q Consensus 223 ~~---~~~~~l~-~~a~~~LkpGG~lv~s~ 248 (305)
.. +..+++. ......+.|+|.+++--
T Consensus 169 Ye~k~~~~~vl~~L~~~~~r~~~Gi~v~WY 198 (283)
T 2oo3_A 169 YERKEEYKEIPYAIKNAYSKFSTGLYCVWY 198 (283)
T ss_dssp CCSTTHHHHHHHHHHHHHHHCTTSEEEEEE
T ss_pred CCCCcHHHHHHHHHHHhCccCCCeEEEEEE
Confidence 54 3334432 12334678999988875
|
| >3qv2_A 5-cytosine DNA methyltransferase; DNMT2, ehmeth; HET: SAH; 2.15A {Entamoeba histolytica} | Back alignment and structure |
|---|
Probab=97.54 E-value=0.0009 Score=61.17 Aligned_cols=144 Identities=10% Similarity=0.053 Sum_probs=89.8
Q ss_pred CCEEEEEecCCCccHHHHHhhhCC-CcEE-EEEeCChHHHHHHHHHHHcCCCeEEEEccCCCCcccccCCCcEeEEEEeC
Q 021911 144 GARVLYLGAASGTTVSHVSDIVGP-NGVV-YAVEFSHRSGRDLVNMAKKRTNVIPIIEDARHPAKYRMLVGMVDVIFSDV 221 (305)
Q Consensus 144 g~~VLDlG~G~G~~t~~la~~~~~-~~~V-~avD~s~~~~~~l~~~a~~~~nI~~~~~D~~~~~~~~~~~~~fD~V~~d~ 221 (305)
..+||||+||.|.++.-+.+. +- .-.| .++|+++.+.+....+. +.. +++.|+++..........+|+|+..+
T Consensus 10 ~~~vidLFaG~GG~~~G~~~a-G~~~~~v~~a~e~d~~a~~ty~~N~---~~~-~~~~DI~~~~~~~i~~~~~Dil~ggp 84 (327)
T 3qv2_A 10 QVNVIEFFSGIGGLRSSYERS-SININATFIPFDINEIANKIYSKNF---KEE-VQVKNLDSISIKQIESLNCNTWFMSP 84 (327)
T ss_dssp CEEEEEETCTTTHHHHHHHHS-SCCCCEEEEEECCCHHHHHHHHHHH---CCC-CBCCCTTTCCHHHHHHTCCCEEEECC
T ss_pred CCEEEEECCChhHHHHHHHHc-CCCceEEEEEEECCHHHHHHHHHHC---CCC-cccCChhhcCHHHhccCCCCEEEecC
Confidence 469999999999999988775 21 1256 79999995433333222 222 66789888754322223699999988
Q ss_pred CChhH--------------H-HHHHHHHhc----cC--CCCcEEEEEEcccccCCCCchhhhHHHHHHHHHHCCCcEeEE
Q 021911 222 AQPDQ--------------A-RILALNASY----FL--KAGGHFVISIKANCIDSTVPAEAVFQSEVKKLQQDQFKPFEQ 280 (305)
Q Consensus 222 ~~~~~--------------~-~~l~~~a~~----~L--kpGG~lv~s~~~~~i~~~~~~~~v~~~~~~~l~~~Gf~~~e~ 280 (305)
||... . .++. ++.+ .+ +|. .+++.-. ..+.. ...+...++.|++.||.+...
T Consensus 85 PCQ~fs~S~ag~~~~~~d~r~~L~~-~~~r~~i~~~~~~P~-~~~lENV-~gl~~----~~~~~~i~~~l~~~GY~v~~~ 157 (327)
T 3qv2_A 85 PCQPYNNSIMSKHKDINDPRAKSVL-HLYRDILPYLINKPK-HIFIENV-PLFKE----SLVFKEIYNILIKNQYYIKDI 157 (327)
T ss_dssp CCTTCSHHHHTTTCTTTCGGGHHHH-HHHHTTGGGCSSCCS-EEEEEEC-GGGGG----SHHHHHHHHHHHHTTCEEEEE
T ss_pred CccCcccccCCCCCCCccccchhHH-HHHHHHHHHhccCCC-EEEEEch-hhhcC----hHHHHHHHHHHHhCCCEEEEE
Confidence 85432 1 2333 4444 44 565 4444321 11111 234556678888999998765
Q ss_pred e----ec-CCCCCceEEEEEEEcC
Q 021911 281 V----TL-EPFERDHACVVGGYRM 299 (305)
Q Consensus 281 ~----~l-~p~~~~~~~vv~~~~~ 299 (305)
+ ++ -|..|..+++||.++.
T Consensus 158 vl~a~~yGvPQ~R~R~fivg~r~~ 181 (327)
T 3qv2_A 158 ICSPIDIGIPNSRTRYYVMARLTP 181 (327)
T ss_dssp EECGGGGTCSBCCCEEEEEEESSC
T ss_pred EEeHHHcCCCccceEEEEEEEeCC
Confidence 4 22 5678999999998653
|
| >1m6e_X S-adenosyl-L-methionnine:salicylic acid carboxyl methyltransferase; rossmann fold, protein-small molecule complex; HET: SAH SAL; 3.00A {Clarkia breweri} SCOP: c.66.1.35 | Back alignment and structure |
|---|
Probab=97.50 E-value=0.00018 Score=66.65 Aligned_cols=105 Identities=16% Similarity=0.125 Sum_probs=68.2
Q ss_pred CCEEEEEecCCCccHHHHHhh---------------hCCCcEEEEEeCChHHHHHHHHHHHc---CCCeEEEEccCCCCc
Q 021911 144 GARVLYLGAASGTTVSHVSDI---------------VGPNGVVYAVEFSHRSGRDLVNMAKK---RTNVIPIIEDARHPA 205 (305)
Q Consensus 144 g~~VLDlG~G~G~~t~~la~~---------------~~~~~~V~avD~s~~~~~~l~~~a~~---~~nI~~~~~D~~~~~ 205 (305)
..+|+|+||++|..|+.+.+. -.|..+|+..|+...-...+.+.... ..+-.++.+....+.
T Consensus 52 ~~~IaDlGCs~G~Nt~~~v~~ii~~i~~~~~~~~~~~~pe~~v~~nDLp~NDFntlF~~L~~~~~~~~~~f~~gvpgSFy 131 (359)
T 1m6e_X 52 RLAIADLGCSSGPNALFAVTELIKTVEELRKKMGRENSPEYQIFLNDLPGNDFNAIFRSLPIENDVDGVCFINGVPGSFY 131 (359)
T ss_dssp EECCEEESCCSSTTTTTGGGTTHHHHHHHHHSSSCSSCCEEEEEEEECTTSCHHHHHTTTTTSCSCTTCEEEEEEESCSS
T ss_pred ceEEEecCCCCCcchHHHHHHHHHHHHHHHHhcCCCCCCceEEEecCCCchHHHHHHHhcchhcccCCCEEEEecchhhh
Confidence 478999999999988766554 13567899999876322233222221 013466666655554
Q ss_pred ccccCCCcEeEEEEeCCC------h------------------------------hHHHHHHHHHhccCCCCcEEEEEEc
Q 021911 206 KYRMLVGMVDVIFSDVAQ------P------------------------------DQARILALNASYFLKAGGHFVISIK 249 (305)
Q Consensus 206 ~~~~~~~~fD~V~~d~~~------~------------------------------~~~~~l~~~a~~~LkpGG~lv~s~~ 249 (305)
...++..++|+|+++.+. | |...+|. .-++.|+|||+|++++.
T Consensus 132 ~rlfp~~S~d~v~Ss~aLHWls~~p~~l~~nkg~i~~~~~~p~~v~~ay~~Qf~~D~~~FL~-~Ra~EL~pGG~mvl~~~ 210 (359)
T 1m6e_X 132 GRLFPRNTLHFIHSSYSLMWLSQVPIGIESNKGNIYMANTCPQSVLNAYYKQFQEDHALFLR-CRAQEVVPGGRMVLTIL 210 (359)
T ss_dssp SCCSCTTCBSCEEEESCTTBCSSCCSCCCCCTTTTSSCSSSCCTTSCCSHHHHHHHHHHHHH-HHHHHBCTTCEEEEEEE
T ss_pred hccCCCCceEEEEehhhhhhcccCchhhhccCCceEecCCCCHHHHHHHHHHHHHHHHHHHH-HHHHHhcCCceEEEEEe
Confidence 333456799999997761 1 1223354 67889999999999874
|
| >1i4w_A Mitochondrial replication protein MTF1; mitochondrial transcription factor, transcription initiation; 2.60A {Saccharomyces cerevisiae} SCOP: c.66.1.24 | Back alignment and structure |
|---|
Probab=97.35 E-value=0.00059 Score=63.04 Aligned_cols=61 Identities=11% Similarity=-0.072 Sum_probs=48.7
Q ss_pred CCCEEEEEecCCCccHHHHHhhhCCCcEEEEEeCChHHHHHHHHHHHcCCCeEEEEccCCCCc
Q 021911 143 PGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKRTNVIPIIEDARHPA 205 (305)
Q Consensus 143 ~g~~VLDlG~G~G~~t~~la~~~~~~~~V~avD~s~~~~~~l~~~a~~~~nI~~~~~D~~~~~ 205 (305)
++..|||||+|+|.+|..|++... ..+|++||++++.+..+.+.. ..+|++++..|+..++
T Consensus 58 ~~~~VlEIGPG~G~LT~~Ll~~~~-~~~vvavE~D~~l~~~L~~~~-~~~~l~ii~~D~l~~~ 118 (353)
T 1i4w_A 58 EELKVLDLYPGVGIQSAIFYNKYC-PRQYSLLEKRSSLYKFLNAKF-EGSPLQILKRDPYDWS 118 (353)
T ss_dssp TTCEEEEESCTTCHHHHHHHHHHC-CSEEEEECCCHHHHHHHHHHT-TTSSCEEECSCTTCHH
T ss_pred CCCEEEEECCCCCHHHHHHHhhCC-CCEEEEEecCHHHHHHHHHhc-cCCCEEEEECCccchh
Confidence 468999999999999999998743 247999999996555555444 3479999999997664
|
| >3me5_A Cytosine-specific methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium; 1.75A {Shigella flexneri 2A} PDB: 3lx6_A | Back alignment and structure |
|---|
Probab=97.33 E-value=0.002 Score=61.87 Aligned_cols=151 Identities=16% Similarity=0.154 Sum_probs=93.1
Q ss_pred CCEEEEEecCCCccHHHHHhhhCCCcEEEEEeCChHHHHHHHHHHHcCCCeEEEEccCCCCcccc--------------c
Q 021911 144 GARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKRTNVIPIIEDARHPAKYR--------------M 209 (305)
Q Consensus 144 g~~VLDlG~G~G~~t~~la~~~~~~~~V~avD~s~~~~~~l~~~a~~~~nI~~~~~D~~~~~~~~--------------~ 209 (305)
..++|||+||.|.++.-+... + --.|+++|+++.+......+....++..+++.|+++..... .
T Consensus 88 ~~~viDLFaG~GGlslG~~~a-G-~~~v~avE~d~~A~~ty~~N~~~~p~~~~~~~DI~~i~~~~~~~~~~~~~~~~i~~ 165 (482)
T 3me5_A 88 AFRFIDLFAGIGGIRRGFESI-G-GQCVFTSEWNKHAVRTYKANHYCDPATHHFNEDIRDITLSHQEGVSDEAAAEHIRQ 165 (482)
T ss_dssp SEEEEEESCTTSHHHHHHHTT-T-EEEEEEECCCHHHHHHHHHHSCCCTTTCEEESCTHHHHCTTCTTSCHHHHHHHHHH
T ss_pred cceEEEecCCccHHHHHHHHC-C-CEEEEEEeCCHHHHHHHHHhcccCCCcceeccchhhhhhccccccchhhHHhhhhh
Confidence 468999999999999988765 2 23589999999554443333222245667788886653110 1
Q ss_pred CCCcEeEEEEeCCChhHH----------------------HHHH--HHHhccCCCCcEEEEEEcccccCCCCchhhhHHH
Q 021911 210 LVGMVDVIFSDVAQPDQA----------------------RILA--LNASYFLKAGGHFVISIKANCIDSTVPAEAVFQS 265 (305)
Q Consensus 210 ~~~~fD~V~~d~~~~~~~----------------------~~l~--~~a~~~LkpGG~lv~s~~~~~i~~~~~~~~v~~~ 265 (305)
....+|+|+..+||.... .++. ..+...++|. +|++.-. .-+.+ .+....|..
T Consensus 166 ~~~~~Dvl~gGpPCQ~FS~AG~~k~~~~g~~~G~~~D~R~~Lf~e~~riI~~~rPk-~fvlENV-~gl~s-~~~g~~f~~ 242 (482)
T 3me5_A 166 HIPEHDVLLAGFPCQPFSLAGVSKKNSLGRAHGFACDTQGTLFFDVVRIIDARRPA-MFVLENV-KNLKS-HDKGKTFRI 242 (482)
T ss_dssp HSCCCSEEEEECCCCCC------------------CTTTTSHHHHHHHHHHHHCCS-EEEEEEE-TTTTT-GGGGHHHHH
T ss_pred cCCCCCEEEecCCCcchhhhCcccccccccccccccCccccHHHHHHHHHHHcCCc-EEEEeCc-HHHhc-ccCCcHHHH
Confidence 135789999999864200 1222 0234456786 4444321 11211 123346677
Q ss_pred HHHHHHHCCCcEeE----------Ee---ecCCCCCceEEEEEEEcC
Q 021911 266 EVKKLQQDQFKPFE----------QV---TLEPFERDHACVVGGYRM 299 (305)
Q Consensus 266 ~~~~l~~~Gf~~~e----------~~---~l~p~~~~~~~vv~~~~~ 299 (305)
.++.|++.||.+.+ ++ ++-|..|..+++||.++.
T Consensus 243 i~~~L~~lGY~v~~~~~~g~~~~~vlnA~~~vPQ~R~R~fivg~r~~ 289 (482)
T 3me5_A 243 IMQTLDELGYDVADAEDNGPDDPKIIDGKHFLPQHRERIVLVGFRRD 289 (482)
T ss_dssp HHHHHHHTTEEETTTTCCSTTCTTEEEGGGTSSBCCEEEEEEEEEGG
T ss_pred HHHHHhcCCcEEEeccccCcccceeeeccccCCccceEEEEEEEecC
Confidence 77888889987742 22 346888999999998764
|
| >2zig_A TTHA0409, putative modification methylase; methyltransferase, S- adenosylmethionine, structural genomics, NPPSFA; 2.10A {Thermus thermophilus} PDB: 2zie_A* 2zif_A | Back alignment and structure |
|---|
Probab=97.24 E-value=0.00046 Score=62.05 Aligned_cols=59 Identities=24% Similarity=0.140 Sum_probs=43.2
Q ss_pred hhhHHHHHHHccccccCCCCCCEEEEEecCCCccHHHHHhhhCCCcEEEEEeCChHHHHHHHHHHH
Q 021911 124 FRSKLAAAVLGGVDNIWIKPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAK 189 (305)
Q Consensus 124 ~~s~l~a~ll~~l~~~~~~~g~~VLDlG~G~G~~t~~la~~~~~~~~V~avD~s~~~~~~l~~~a~ 189 (305)
+...|+..++..+ ..+++.|||++||+|+++..++.. + .+++++|+++.+++.+.+.++
T Consensus 220 ~p~~l~~~~i~~~----~~~~~~vlD~f~GsGt~~~~a~~~-g--~~~~g~e~~~~~~~~a~~r~~ 278 (297)
T 2zig_A 220 FPLELAERLVRMF----SFVGDVVLDPFAGTGTTLIAAARW-G--RRALGVELVPRYAQLAKERFA 278 (297)
T ss_dssp SCHHHHHHHHHHH----CCTTCEEEETTCTTTHHHHHHHHT-T--CEEEEEESCHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHh----CCCCCEEEECCCCCCHHHHHHHHc-C--CeEEEEeCCHHHHHHHHHHHH
Confidence 4456666665422 367899999999999999988775 2 489999999966555554443
|
| >3vyw_A MNMC2; tRNA wobble uridine, modification enzyme, genetic CODE, 5- methylaminomethyl-2-thiouridine, methyltransferase; HET: SAM; 2.49A {Aquifex aeolicus} PDB: 2e58_A* | Back alignment and structure |
|---|
Probab=97.22 E-value=0.0017 Score=58.67 Aligned_cols=141 Identities=19% Similarity=0.151 Sum_probs=82.7
Q ss_pred CCCCEEEEEecCCCccHHHHH---hhhCCCcE--EEEEeCC--------hHHHHHHHHHHHc-C-----CC--eEEEEcc
Q 021911 142 KPGARVLYLGAASGTTVSHVS---DIVGPNGV--VYAVEFS--------HRSGRDLVNMAKK-R-----TN--VIPIIED 200 (305)
Q Consensus 142 ~~g~~VLDlG~G~G~~t~~la---~~~~~~~~--V~avD~s--------~~~~~~l~~~a~~-~-----~n--I~~~~~D 200 (305)
++.-+|||+|-|+|...+... ....+..+ .+++|.. +....++.+.... . .+ +.+...|
T Consensus 95 ~~~~~IlE~GFGTGLNfl~t~~~~~~~~~~~~L~~iS~Ek~pl~~~~~~~~~~~~l~~~l~~~~p~~~~~~v~L~l~~GD 174 (308)
T 3vyw_A 95 RKVIRILDVGFGLGYNLAVALKHLWEVNPKLRVEIISFEKELLKEFPILPEPYREIHEFLLERVPEYEGERLSLKVLLGD 174 (308)
T ss_dssp CSEEEEEEECCTTSHHHHHHHHHHHHHCTTCEEEEEEEESSCCSCCCCCCTTSHHHHHHHHHHCSEEECSSEEEEEEESC
T ss_pred CCCcEEEEeCCCccHHHHHHHHHHHHhCCCcceEEEeecHHHHHhhHhchHhHHHHHHHHHHhCccccCCcEEEEEEech
Confidence 344689999999998654433 23345554 4566642 1111222222211 1 23 4566788
Q ss_pred CCCCcccccCCCcEeEEEEeCCC----h--hHHHHHHHHHhccCCCCcEEEEEEcccccCCCCchhhhHHHHHHHHHHCC
Q 021911 201 ARHPAKYRMLVGMVDVIFSDVAQ----P--DQARILALNASYFLKAGGHFVISIKANCIDSTVPAEAVFQSEVKKLQQDQ 274 (305)
Q Consensus 201 ~~~~~~~~~~~~~fD~V~~d~~~----~--~~~~~l~~~a~~~LkpGG~lv~s~~~~~i~~~~~~~~v~~~~~~~l~~~G 274 (305)
+....+. .....||+|+.|.-. | +..+++. .++++++|||+|+-.+ + .. .....|+++|
T Consensus 175 a~~~l~~-l~~~~~Da~flDgFsP~kNPeLWs~e~f~-~l~~~~~pgg~laTYt---a------ag----~VRR~L~~aG 239 (308)
T 3vyw_A 175 ARKRIKE-VENFKADAVFHDAFSPYKNPELWTLDFLS-LIKERIDEKGYWVSYS---S------SL----SVRKSLLTLG 239 (308)
T ss_dssp HHHHGGG-CCSCCEEEEEECCSCTTTSGGGGSHHHHH-HHHTTEEEEEEEEESC---C------CH----HHHHHHHHTT
T ss_pred HHHHHhh-hcccceeEEEeCCCCcccCcccCCHHHHH-HHHHHhCCCcEEEEEe---C------cH----HHHHHHHHCC
Confidence 8654332 123479999998752 2 4677887 9999999999887443 1 11 1246688999
Q ss_pred CcEeEEeecCCCCCceEEEEEEEcCC
Q 021911 275 FKPFEQVTLEPFERDHACVVGGYRMP 300 (305)
Q Consensus 275 f~~~e~~~l~p~~~~~~~vv~~~~~~ 300 (305)
|++.+.- .+.+..-+.+|.++.+
T Consensus 240 F~V~k~~---G~g~KReml~A~~~~~ 262 (308)
T 3vyw_A 240 FKVGSSR---EIGRKRKGTVASLKAP 262 (308)
T ss_dssp CEEEEEE---CC---CEEEEEESSSC
T ss_pred CEEEecC---CCCCCCceeEEecCCC
Confidence 9987654 4555455677776543
|
| >3pvc_A TRNA 5-methylaminomethyl-2-thiouridine biosynthes bifunctional protein MNMC; structural genomics, PSI-biology; HET: FAD; 2.31A {Yersinia pestis} PDB: 3sgl_A* | Back alignment and structure |
|---|
Probab=96.77 E-value=0.006 Score=61.08 Aligned_cols=126 Identities=17% Similarity=0.087 Sum_probs=80.3
Q ss_pred CCCCEEEEEecCCCccHHHHHhhhC------C-----CcEEEEEeCChHHHHHHHHHHH--------------cC-----
Q 021911 142 KPGARVLYLGAASGTTVSHVSDIVG------P-----NGVVYAVEFSHRSGRDLVNMAK--------------KR----- 191 (305)
Q Consensus 142 ~~g~~VLDlG~G~G~~t~~la~~~~------~-----~~~V~avD~s~~~~~~l~~~a~--------------~~----- 191 (305)
++.-+|||+|.|+|...+.+.+.+. | ..+++++|..|-...++.+... ..
T Consensus 57 ~~~~~i~e~gfG~G~n~l~~~~~~~~~~~~~p~~~~~~l~~~s~E~~p~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~ 136 (689)
T 3pvc_A 57 QQSCIFAETGFGTGLNFLTLWRDFALFRQQSPNATLRRLHYISFEKYPLHVADLASAHARWPELASFAEQLRAQWPLPLA 136 (689)
T ss_dssp SSEEEEEEECCTTSHHHHHHHHHHHHHHHHCTTSSCCEEEEEEEESSCCCHHHHHHHHTTCGGGHHHHHHHHHTCCCCCS
T ss_pred CCceEEEEecCchHHHHHHHHHHHHHhhhhCCCCCCceEEEEEeeCCCCCHHHHHHHHHhCcchhHHHHHHHHhCcccCC
Confidence 3457999999999998888776541 1 1478999985433334433211 11
Q ss_pred -----------CCeEEEEccCCCCcccc--cCCCcEeEEEEeCCCh------hHHHHHHHHHhccCCCCcEEEEEEcccc
Q 021911 192 -----------TNVIPIIEDARHPAKYR--MLVGMVDVIFSDVAQP------DQARILALNASYFLKAGGHFVISIKANC 252 (305)
Q Consensus 192 -----------~nI~~~~~D~~~~~~~~--~~~~~fD~V~~d~~~~------~~~~~l~~~a~~~LkpGG~lv~s~~~~~ 252 (305)
-.+.++..|+.+..+.. .....||++|+|...| +..+++. .+.++++||+.+...+ |
T Consensus 137 ~~~r~~~~~~~~~l~l~~gd~~~~l~~~~~~~~~~~da~flD~f~p~~np~~w~~~~~~-~l~~~~~~g~~~~t~~---~ 212 (689)
T 3pvc_A 137 GCHRILLADGAITLDLWFGDVNTLLPTLDDSLNNQVDAWFLDGFAPAKNPDMWNEQLFN-AMARMTRPGGTFSTFT---A 212 (689)
T ss_dssp EEEEEEETTTTEEEEEEESCHHHHGGGCCGGGTTCEEEEEECSSCC--CCTTCSHHHHH-HHHHHEEEEEEEEESC---C
T ss_pred CceEEEecCCcEEEEEEccCHHHHHhhcccccCCceeEEEECCCCCCCChhhhhHHHHH-HHHHHhCCCCEEEecc---C
Confidence 13556677875543221 0136899999988744 3477777 8889999998866443 2
Q ss_pred cCCCCchhhhHHHHHHHHHHCCCcEeEEe
Q 021911 253 IDSTVPAEAVFQSEVKKLQQDQFKPFEQV 281 (305)
Q Consensus 253 i~~~~~~~~v~~~~~~~l~~~Gf~~~e~~ 281 (305)
. ......|.++||.+....
T Consensus 213 ------~----~~vr~~l~~aGf~~~~~~ 231 (689)
T 3pvc_A 213 ------A----GFVRRGLQQAGFNVTKVK 231 (689)
T ss_dssp ------C----HHHHHHHHHTTCEEEEEE
T ss_pred ------c----HHHHHHHHhCCeEEEecc
Confidence 1 122466788999877643
|
| >2qrv_A DNA (cytosine-5)-methyltransferase 3A; DNA methyltransferase 3A (DNMT3A) and ITS regulatory factor; HET: DNA SAH; 2.89A {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.51 E-value=0.0032 Score=56.66 Aligned_cols=145 Identities=14% Similarity=0.087 Sum_probs=83.7
Q ss_pred CCCCEEEEEecCCCccHHHHHhhhCCCcE-EEEEeCChHHHHHHHHHHHcCCCeEEEEccCCCCcccccC-CCcEeEEEE
Q 021911 142 KPGARVLYLGAASGTTVSHVSDIVGPNGV-VYAVEFSHRSGRDLVNMAKKRTNVIPIIEDARHPAKYRML-VGMVDVIFS 219 (305)
Q Consensus 142 ~~g~~VLDlG~G~G~~t~~la~~~~~~~~-V~avD~s~~~~~~l~~~a~~~~nI~~~~~D~~~~~~~~~~-~~~fD~V~~ 219 (305)
+...+||||+||.|.++..+.+. +-... |+++|+++.+......+ .++..++..|+++....... ...+|+|+.
T Consensus 14 ~~~~~vidLFaG~GG~~~g~~~a-G~~~~~v~a~E~d~~a~~ty~~N---~~~~~~~~~DI~~i~~~~i~~~~~~Dll~g 89 (295)
T 2qrv_A 14 RKPIRVLSLFDGIATGLLVLKDL-GIQVDRYIASEVCEDSITVGMVR---HQGKIMYVGDVRSVTQKHIQEWGPFDLVIG 89 (295)
T ss_dssp CCCEEEEEETCTTTHHHHHHHHT-TBCEEEEEEECCCHHHHHHHHHH---TTTCEEEECCGGGCCHHHHHHTCCCSEEEE
T ss_pred CCCCEEEEeCcCccHHHHHHHHC-CCccceEEEEECCHHHHHHHHHh---CCCCceeCCChHHccHHHhcccCCcCEEEe
Confidence 44679999999999999888765 33333 79999999543332221 24567788999877543211 247999999
Q ss_pred eCCChh-------------HH-HHHH--HHHhccCCCCc------EEEEEEcccccCCCCchhhhHHHHHHHHHHCCCcE
Q 021911 220 DVAQPD-------------QA-RILA--LNASYFLKAGG------HFVISIKANCIDSTVPAEAVFQSEVKKLQQDQFKP 277 (305)
Q Consensus 220 d~~~~~-------------~~-~~l~--~~a~~~LkpGG------~lv~s~~~~~i~~~~~~~~v~~~~~~~l~~~Gf~~ 277 (305)
.+||.. .. .++. ..+.+.++|.- ++++.-.. -+.+. ....+ .+.| +..+.+
T Consensus 90 gpPCQ~fS~ag~~r~g~~d~r~~L~~~~~rii~~~~P~~~~~~P~~~l~ENV~-gl~~~--~~~~~---~~~l-~~~~~v 162 (295)
T 2qrv_A 90 GSPCNDLSIVNPARKGLYEGTGRLFFEFYRLLHDARPKEGDDRPFFWLFENVV-AMGVS--DKRDI---SRFL-ESNPVM 162 (295)
T ss_dssp CCCCGGGBTTCTTCCTTTSTTTTHHHHHHHHHHHHSCCTTCCCCCEEEEEEES-SBCHH--HHHHH---HHHH-TSCCCC
T ss_pred cCCCccccccCccccccccccchhHHHHHHHHHHhCcccccCCccEEEEEcCc-chhhc--CccHH---HHHH-hcCcEE
Confidence 988531 11 1221 03444567752 45554211 11111 11111 2223 345777
Q ss_pred eEEeecCCCCCceEEEEEEEc
Q 021911 278 FEQVTLEPFERDHACVVGGYR 298 (305)
Q Consensus 278 ~e~~~l~p~~~~~~~vv~~~~ 298 (305)
+...++-|..|..+++ +.++
T Consensus 163 l~a~~~~PQ~R~R~~i-~~~~ 182 (295)
T 2qrv_A 163 IDAKEVSAAHRARYFW-GNLP 182 (295)
T ss_dssp EEGGGTSSBCCEEEEE-ECCT
T ss_pred eecceECCccCcEEEE-EEec
Confidence 7766667888888766 5543
|
| >4ft4_B DNA (cytosine-5)-methyltransferase 1; chromodomain, BAH domain, DNA methyltransferase domain, H3K9 binding, methylation, transferase; HET: DNA MLY SAH; 2.70A {Zea mays} PDB: 4ft2_A* 4fsx_A* | Back alignment and structure |
|---|
Probab=96.49 E-value=0.029 Score=57.02 Aligned_cols=84 Identities=17% Similarity=0.081 Sum_probs=51.4
Q ss_pred CcEeEEEEeCCCh----------------h----HHHHHHHHHhccCCCCcEEEEEEcccccCCCCchhhhHHHHHHHHH
Q 021911 212 GMVDVIFSDVAQP----------------D----QARILALNASYFLKAGGHFVISIKANCIDSTVPAEAVFQSEVKKLQ 271 (305)
Q Consensus 212 ~~fD~V~~d~~~~----------------~----~~~~l~~~a~~~LkpGG~lv~s~~~~~i~~~~~~~~v~~~~~~~l~ 271 (305)
+.+|+|+.-+||. + ...-+. .+...++|- +|++.-. .-+.+ ......|...+..|.
T Consensus 378 G~VDvl~GGpPCQ~FS~aG~~kg~~~~~~D~R~~L~~~~~-riv~~~rPk-~fvlENV-~glls-~~~g~~~~~il~~l~ 453 (784)
T 4ft4_B 378 GDVDVICGGPPCQGISGFNRYRNRDEPLKDEKNKQMVTFM-DIVAYLKPK-YVLMENV-VDILK-FADGYLGKYALSCLV 453 (784)
T ss_dssp TSCSEEEECCCCCSSSGGGGGSCTTSTTTSTTCHHHHHHH-HHHHHHCCS-EEEEEEE-GGGGT-GGGGHHHHHHHHHHH
T ss_pred CCeEEEEecCCCcchhhhhcccCcCccccCchhHHHHHHH-HHHHHHCCC-EEEEEec-CCccc-cccchHHHHHHHHHH
Confidence 4689999988852 1 111222 455678997 4444321 11111 223446667788889
Q ss_pred HCCCcEeEEee-c----CCCCCceEEEEEEEcC
Q 021911 272 QDQFKPFEQVT-L----EPFERDHACVVGGYRM 299 (305)
Q Consensus 272 ~~Gf~~~e~~~-l----~p~~~~~~~vv~~~~~ 299 (305)
+.||.+...+- . -|..|..+++||.++-
T Consensus 454 ~lGY~v~~~vLnA~dyGVPQ~R~Rvfivg~r~d 486 (784)
T 4ft4_B 454 AMKYQARLGMMVAGCYGLPQFRMRVFLWGALSS 486 (784)
T ss_dssp HTTCEEEEEEEEGGGGTCSSCCEEEEEEEECTT
T ss_pred hCCCeeeeeecCHHHcCCCcccccceeeeeccC
Confidence 99999875442 1 4677899999997653
|
| >3swr_A DNA (cytosine-5)-methyltransferase 1; epigenetics, DNA methyltransferase fold, maintenance methyla transferase; HET: DNA SFG MES; 2.49A {Homo sapiens} PDB: 3pta_A* 3pt6_A* 3pt9_A* 4da4_A* | Back alignment and structure |
|---|
Probab=96.41 E-value=0.028 Score=58.42 Aligned_cols=146 Identities=12% Similarity=0.107 Sum_probs=88.7
Q ss_pred CCEEEEEecCCCccHHHHHhhhCCCcEEEEEeCChHHHHHHHHHHHc-CCCeEEEEccCCCCc------------cccc-
Q 021911 144 GARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKK-RTNVIPIIEDARHPA------------KYRM- 209 (305)
Q Consensus 144 g~~VLDlG~G~G~~t~~la~~~~~~~~V~avD~s~~~~~~l~~~a~~-~~nI~~~~~D~~~~~------------~~~~- 209 (305)
..++|||+||.|.++.-|... +-.-.|.|+|+++.+. +..+. .++..++..|+..+. ....
T Consensus 540 ~l~~iDLFaG~GGlslGl~~A-G~~~vv~avEid~~A~----~ty~~N~p~~~~~~~DI~~l~~~~~~~di~~~~~~~lp 614 (1002)
T 3swr_A 540 KLRTLDVFSGCGGLSEGFHQA-GISDTLWAIEMWDPAA----QAFRLNNPGSTVFTEDCNILLKLVMAGETTNSRGQRLP 614 (1002)
T ss_dssp CEEEEEESCTTSHHHHHHHHH-TSEEEEEEECSSHHHH----HHHHHHCTTSEEECSCHHHHHHHHHHTCSBCTTCCBCC
T ss_pred CCeEEEeccCccHHHHHHHHC-CCCceEEEEECCHHHH----HHHHHhCCCCccccccHHHHhhhccchhhhhhhhhhcc
Confidence 468999999999999988765 2112688999999443 33332 256677777753321 0001
Q ss_pred CCCcEeEEEEeCCChh------------------HHHHHHHHHhccCCCCcEEEEEEcccccCCCCchhhhHHHHHHHHH
Q 021911 210 LVGMVDVIFSDVAQPD------------------QARILALNASYFLKAGGHFVISIKANCIDSTVPAEAVFQSEVKKLQ 271 (305)
Q Consensus 210 ~~~~fD~V~~d~~~~~------------------~~~~l~~~a~~~LkpGG~lv~s~~~~~i~~~~~~~~v~~~~~~~l~ 271 (305)
....+|+|+..+||.. ....+. .+...++|- +|++.-.. -+.+ ......+...+..|.
T Consensus 615 ~~~~vDll~GGpPCQ~FS~ag~~~~~~~~d~R~~L~~~~~-riv~~~rPk-~~llENV~-glls-~~~~~~~~~i~~~L~ 690 (1002)
T 3swr_A 615 QKGDVEMLCGGPPCQGFSGMNRFNSRTYSKFKNSLVVSFL-SYCDYYRPR-FFLLENVR-NFVS-FKRSMVLKLTLRCLV 690 (1002)
T ss_dssp CTTTCSEEEECCCCTTCCSSSCCCHHHHHHHTTSHHHHHH-HHHHHHCCS-EEEEEEEG-GGGT-TGGGHHHHHHHHHHH
T ss_pred cCCCeeEEEEcCCCcchhhhCCCCCCcccchhhHHHHHHH-HHHHHhCCC-EEEEeccH-HHhc-cCcchHHHHHHHHHH
Confidence 1247999999888521 011122 455667886 44443211 1111 122345666678888
Q ss_pred HCCCcEeEEe-ec----CCCCCceEEEEEEEc
Q 021911 272 QDQFKPFEQV-TL----EPFERDHACVVGGYR 298 (305)
Q Consensus 272 ~~Gf~~~e~~-~l----~p~~~~~~~vv~~~~ 298 (305)
+.||.+...+ .. -|..|..+++||...
T Consensus 691 ~lGY~v~~~vLnA~dyGvPQ~R~R~fiva~r~ 722 (1002)
T 3swr_A 691 RMGYQCTFGVLQAGQYGVAQTRRRAIILAAAP 722 (1002)
T ss_dssp HHTCEEEEEEEEGGGGTCSBCCEEEEEEEECT
T ss_pred hcCCeEEEEEEEHHHCCCCccceEEEEEEEeC
Confidence 8899876543 21 567789999999864
|
| >1g60_A Adenine-specific methyltransferase MBOIIA; structural genomics, DNA methylation, S- adenosylmethionine, PSI, protein structure initiative; HET: SAM; 1.74A {Moraxella bovis} SCOP: c.66.1.11 | Back alignment and structure |
|---|
Probab=96.27 E-value=0.0064 Score=53.40 Aligned_cols=57 Identities=16% Similarity=0.107 Sum_probs=41.2
Q ss_pred hhHHHHHHHccccccCCCCCCEEEEEecCCCccHHHHHhhhCCCcEEEEEeCChHHHHHHHHHH
Q 021911 125 RSKLAAAVLGGVDNIWIKPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMA 188 (305)
Q Consensus 125 ~s~l~a~ll~~l~~~~~~~g~~VLDlG~G~G~~t~~la~~~~~~~~V~avD~s~~~~~~l~~~a 188 (305)
...|+..++.. ...+++.|||.+||+|+++..++.. + .+++++|+++.++..+.+.+
T Consensus 198 p~~l~~~~i~~----~~~~~~~vlD~f~GsGtt~~~a~~~-g--r~~ig~e~~~~~~~~~~~r~ 254 (260)
T 1g60_A 198 PRDLIERIIRA----SSNPNDLVLDCFMGSGTTAIVAKKL-G--RNFIGCDMNAEYVNQANFVL 254 (260)
T ss_dssp CHHHHHHHHHH----HCCTTCEEEESSCTTCHHHHHHHHT-T--CEEEEEESCHHHHHHHHHHH
T ss_pred CHHHHHHHHHH----hCCCCCEEEECCCCCCHHHHHHHHc-C--CeEEEEeCCHHHHHHHHHHH
Confidence 44566666532 3468899999999999988887765 3 48999999995554444444
|
| >2py6_A Methyltransferase FKBM; YP_546752.1, structural genomics, JO center for structural genomics, JCSG, protein structure INI PSI-2; 2.15A {Methylobacillus flagellatus KT} SCOP: c.66.1.56 | Back alignment and structure |
|---|
Probab=96.15 E-value=0.0093 Score=56.04 Aligned_cols=59 Identities=14% Similarity=0.134 Sum_probs=46.9
Q ss_pred CCCCCEEEEEecCCCccHHHHH-hhhCCCcEEEEEeCChHHHHHHHHHHHc-----C-CCeEEEEc
Q 021911 141 IKPGARVLYLGAASGTTVSHVS-DIVGPNGVVYAVEFSHRSGRDLVNMAKK-----R-TNVIPIIE 199 (305)
Q Consensus 141 ~~~g~~VLDlG~G~G~~t~~la-~~~~~~~~V~avD~s~~~~~~l~~~a~~-----~-~nI~~~~~ 199 (305)
++++..|+|+||..|.++..++ ...++.++|+|+|.+|.....+.++.+. . +||+++..
T Consensus 224 l~~~~~viDvGAn~G~~s~~~a~~~~~~~~~V~afEP~p~~~~~L~~n~~~~~N~~~~~~v~~~~~ 289 (409)
T 2py6_A 224 FSDSEKMVDCGASIGESLAGLIGVTKGKFERVWMIEPDRINLQTLQNVLRRYTDTNFASRITVHGC 289 (409)
T ss_dssp CCSSCEEEEETCTTSHHHHHHHHHHTSCCSEEEEECCCHHHHHHHHHHHHHTTTSTTGGGEEEECS
T ss_pred cCCCCEEEECCCCcCHHHHHHHHHhcCCCCEEEEEcCCHHHHHHHHHHHHhhhccCCCCCEEEEEe
Confidence 4788999999999999999988 4444347999999999888888777765 2 56666544
|
| >3s2e_A Zinc-containing alcohol dehydrogenase superfamily; FURX, oxidoreductase; HET: NAD; 1.76A {Ralstonia eutropha} PDB: 3s1l_A* 3s2f_A* 3s2g_A* 3s2i_A* 1llu_A* 3meq_A* | Back alignment and structure |
|---|
Probab=96.01 E-value=0.011 Score=53.64 Aligned_cols=102 Identities=18% Similarity=0.317 Sum_probs=63.8
Q ss_pred ccccCCCCCCEEEEEecCC-CccHHHHHhhhCCCcEEEEEeCChHHHHHHHHHHHcCCCeEEEEccCCCCcc-cccCCCc
Q 021911 136 VDNIWIKPGARVLYLGAAS-GTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKRTNVIPIIEDARHPAK-YRMLVGM 213 (305)
Q Consensus 136 l~~~~~~~g~~VLDlG~G~-G~~t~~la~~~~~~~~V~avD~s~~~~~~l~~~a~~~~nI~~~~~D~~~~~~-~~~~~~~ 213 (305)
|....++++++||-+|||+ |..+..+|+..+ .+|+++|.++.. ++.+++..--..+..+-.+... .....+.
T Consensus 159 l~~~~~~~g~~VlV~GaG~vG~~a~qla~~~G--a~Vi~~~~~~~~----~~~~~~lGa~~~i~~~~~~~~~~~~~~~g~ 232 (340)
T 3s2e_A 159 LKVTDTRPGQWVVISGIGGLGHVAVQYARAMG--LRVAAVDIDDAK----LNLARRLGAEVAVNARDTDPAAWLQKEIGG 232 (340)
T ss_dssp HHTTTCCTTSEEEEECCSTTHHHHHHHHHHTT--CEEEEEESCHHH----HHHHHHTTCSEEEETTTSCHHHHHHHHHSS
T ss_pred HHHcCCCCCCEEEEECCCHHHHHHHHHHHHCC--CeEEEEeCCHHH----HHHHHHcCCCEEEeCCCcCHHHHHHHhCCC
Confidence 3344678999999999875 778888888764 489999999844 3344443211222211111111 0001237
Q ss_pred EeEEEEeCCChhHHHHHHHHHhccCCCCcEEEEE
Q 021911 214 VDVIFSDVAQPDQARILALNASYFLKAGGHFVIS 247 (305)
Q Consensus 214 fD~V~~d~~~~~~~~~l~~~a~~~LkpGG~lv~s 247 (305)
+|+|+.+...+.. +. .+.++|+++|++++.
T Consensus 233 ~d~vid~~g~~~~---~~-~~~~~l~~~G~iv~~ 262 (340)
T 3s2e_A 233 AHGVLVTAVSPKA---FS-QAIGMVRRGGTIALN 262 (340)
T ss_dssp EEEEEESSCCHHH---HH-HHHHHEEEEEEEEEC
T ss_pred CCEEEEeCCCHHH---HH-HHHHHhccCCEEEEe
Confidence 9999877665543 33 566899999999875
|
| >2zig_A TTHA0409, putative modification methylase; methyltransferase, S- adenosylmethionine, structural genomics, NPPSFA; 2.10A {Thermus thermophilus} PDB: 2zie_A* 2zif_A | Back alignment and structure |
|---|
Probab=95.98 E-value=0.0084 Score=53.70 Aligned_cols=88 Identities=13% Similarity=0.101 Sum_probs=52.1
Q ss_pred CCeEEEEccCCCCcccccCCCcEeEEEEeCCCh---h--------------------HHHHHHHHHhccCCCCcEEEEEE
Q 021911 192 TNVIPIIEDARHPAKYRMLVGMVDVIFSDVAQP---D--------------------QARILALNASYFLKAGGHFVISI 248 (305)
Q Consensus 192 ~nI~~~~~D~~~~~~~~~~~~~fD~V~~d~~~~---~--------------------~~~~l~~~a~~~LkpGG~lv~s~ 248 (305)
.++.+++.|+.+.... +..++||+|++|+|.. + ...++. ++.++|||+|.|++.+
T Consensus 20 ~~~~i~~gD~~~~l~~-l~~~s~DlIvtdPPY~~~~~y~~~~~~~~~~~~~~~~l~~l~~~~~-~~~rvLk~~G~l~i~~ 97 (297)
T 2zig_A 20 GVHRLHVGDAREVLAS-FPEASVHLVVTSPPYWTLKRYEDTPGQLGHIEDYEAFLDELDRVWR-EVFRLLVPGGRLVIVV 97 (297)
T ss_dssp -CEEEEESCHHHHHTT-SCTTCEEEEEECCCCCCCC-------CCHHHHHHHHHHHHHHHHHH-HHHHHEEEEEEEEEEE
T ss_pred cCCEEEECcHHHHHhh-CCCCceeEEEECCCCCCccccCCChhhhcccccHHHHHHHHHHHHH-HHHHHcCCCcEEEEEE
Confidence 4678999998764321 2347999999999931 0 123444 8899999999999987
Q ss_pred cccccCCCC-chh--hhH-HHHHHHHHHCCCcEeEEe
Q 021911 249 KANCIDSTV-PAE--AVF-QSEVKKLQQDQFKPFEQV 281 (305)
Q Consensus 249 ~~~~i~~~~-~~~--~v~-~~~~~~l~~~Gf~~~e~~ 281 (305)
......... ... .-+ ......+++.||.....+
T Consensus 98 ~d~~~~~~~~g~~~~~~~~~~l~~~~~~~Gf~~~~~i 134 (297)
T 2zig_A 98 GDVAVARRRFGRHLVFPLHADIQVRCRKLGFDNLNPI 134 (297)
T ss_dssp CCEEEECC----EEEECHHHHHHHHHHHTTCEEEEEE
T ss_pred CCCccccccCCcccccccHHHHHHHHHHcCCeeeccE
Confidence 321111100 000 001 122345678899876543
|
| >4dkj_A Cytosine-specific methyltransferase; CG-specificity, DNA intercalation, CPG sequence, cytosine C5 methylation; HET: DNA C37 5CM SAH; 2.15A {Mycoplasma penetrans} | Back alignment and structure |
|---|
Probab=95.91 E-value=0.036 Score=51.99 Aligned_cols=149 Identities=12% Similarity=0.056 Sum_probs=85.0
Q ss_pred CEEEEEecCCCccHHHHHhhhCCCcE----EEEEeCChHHHHHHHHHHHcCCCe--------------------------
Q 021911 145 ARVLYLGAASGTTVSHVSDIVGPNGV----VYAVEFSHRSGRDLVNMAKKRTNV-------------------------- 194 (305)
Q Consensus 145 ~~VLDlG~G~G~~t~~la~~~~~~~~----V~avD~s~~~~~~l~~~a~~~~nI-------------------------- 194 (305)
.+||||+||.|.....+-+.-.+--. |.++|+++.+......+......+
T Consensus 11 lrvldLFsGiGG~~~Gl~~aG~~~~~~~~~v~avEid~~A~~ty~~n~~~~~~~~~~~~~~~l~~~s~d~k~~~~~~~i~ 90 (403)
T 4dkj_A 11 IKVFEAFAGIGSQFKALKNIARSKNWEIQHSGMVEWFVDAIVSYVAIHSKNFNPKIERLDRDILSISNDSKMPISEYGIK 90 (403)
T ss_dssp EEEEEETCTTCHHHHHHHHHHHHHTEEEEEEEEECCBHHHHHHHHHHHCSSCCCCCBCCCTTCCCCBSSSSSCCCHHHHH
T ss_pred ceEEEEecCcCHHHHHHHHhCCccccceeeEEEEecCHHHHHHHHHHcCCCcccchhhhhhhhhhccccccccccccccc
Confidence 69999999999998888765100113 889999996654443333221000
Q ss_pred -------E----------EEEccCCCCcccccCCCcEeEEEEeCCCh------------h---H-HHHHHHHHhc-----
Q 021911 195 -------I----------PIIEDARHPAKYRMLVGMVDVIFSDVAQP------------D---Q-ARILALNASY----- 236 (305)
Q Consensus 195 -------~----------~~~~D~~~~~~~~~~~~~fD~V~~d~~~~------------~---~-~~~l~~~a~~----- 236 (305)
. ....|+++.... ..+..+|+|+..+||. + . ..++. ++.+
T Consensus 91 ~l~~~~l~~i~~~~~~~~~~~~DI~~i~~~-~ip~~vDll~ggpPCQ~fS~ag~~~g~~d~~~~r~~L~~-~~~rii~~~ 168 (403)
T 4dkj_A 91 KINNTIKASYLNYAKKHFNNLFDIKKVNKD-NFPKNIDIFTYSFPCQDLSVQGLQKGIDKELNTRSGLLW-EIERILEEI 168 (403)
T ss_dssp HHTTBHHHHHHHHHHHHSCBCCCGGGCCTT-TSCSSCSEEEECCCCTTTCTTSCCCCCCGGGCCSGGGHH-HHHHHHHHH
T ss_pred cccHHHHHHHHhhcccCCCcccchhhcCHh-hCCCCCcEEEEeCCCCCHHHhCCCCCCCccccccchhHH-HHHHHHHHh
Confidence 0 023666655433 2345689999988852 1 1 11221 2222
Q ss_pred ------cCCCCcEEEEEEcccccCCCCchhhhHHHHHHHHHHCCCcEeEEe-e---c-CCCCCceEEEEEEEc
Q 021911 237 ------FLKAGGHFVISIKANCIDSTVPAEAVFQSEVKKLQQDQFKPFEQV-T---L-EPFERDHACVVGGYR 298 (305)
Q Consensus 237 ------~LkpGG~lv~s~~~~~i~~~~~~~~v~~~~~~~l~~~Gf~~~e~~-~---l-~p~~~~~~~vv~~~~ 298 (305)
.++|. ++++.-. .-+.+ ......+...++.|++.||.+...+ . + -|..|..+++||..+
T Consensus 169 ~~k~~~~~~Pk-~~l~ENV-~gl~~-~~~~~~~~~i~~~l~~~GY~v~~~vl~a~~~GvPQ~R~R~fiva~r~ 238 (403)
T 4dkj_A 169 KNSFSKEEMPK-YLLMENV-KNLLS-HKNKKNYNTWLKQLEKFGYKSKTYLLNSKNFDNCQNRERVFCLSIRD 238 (403)
T ss_dssp HHHSCGGGSCS-EEEEEEE-GGGGS-HHHHHHHHHHHHHHHHTTEEEEEEEEEGGGTTCSBCCEEEEEEEEEH
T ss_pred hhhhccccCCC-EEEEecc-hhhhh-hccchHHHHHHHHHHhCCCeEEEEEecHHHcCCCccceEEEEEEEcC
Confidence 26785 4444321 11111 1122355666788889999876543 2 2 566789999999764
|
| >2dph_A Formaldehyde dismutase; dismutation of aldehydes, oxidoreductase; HET: NAD; 2.27A {Pseudomonas putida} | Back alignment and structure |
|---|
Probab=95.89 E-value=0.017 Score=53.72 Aligned_cols=103 Identities=18% Similarity=0.200 Sum_probs=64.6
Q ss_pred ccCCCCCCEEEEEecCC-CccHHHHHhhhCCCcEEEEEeCChHHHHHHHHHHHcCCCeEEEEccCCCC-cc-cc-c-CCC
Q 021911 138 NIWIKPGARVLYLGAAS-GTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKRTNVIPIIEDARHP-AK-YR-M-LVG 212 (305)
Q Consensus 138 ~~~~~~g~~VLDlG~G~-G~~t~~la~~~~~~~~V~avD~s~~~~~~l~~~a~~~~nI~~~~~D~~~~-~~-~~-~-~~~ 212 (305)
...++++++||.+|||+ |..+..+|+..+ ..+|+++|.++. .++.+++. ....+..+-.+. .. .. . ...
T Consensus 180 ~~~~~~g~~VlV~GaG~vG~~aiqlak~~G-a~~Vi~~~~~~~----~~~~a~~l-Ga~~i~~~~~~~~~~~~~~~~~g~ 253 (398)
T 2dph_A 180 SAGVKPGSHVYIAGAGPVGRCAAAGARLLG-AACVIVGDQNPE----RLKLLSDA-GFETIDLRNSAPLRDQIDQILGKP 253 (398)
T ss_dssp HTTCCTTCEEEEECCSHHHHHHHHHHHHHT-CSEEEEEESCHH----HHHHHHTT-TCEEEETTSSSCHHHHHHHHHSSS
T ss_pred HcCCCCCCEEEEECCCHHHHHHHHHHHHcC-CCEEEEEcCCHH----HHHHHHHc-CCcEEcCCCcchHHHHHHHHhCCC
Confidence 34678999999999876 778888888765 238999999983 34445543 233332221111 11 00 0 112
Q ss_pred cEeEEEEeCCChh-----------HHHHHHHHHhccCCCCcEEEEE
Q 021911 213 MVDVIFSDVAQPD-----------QARILALNASYFLKAGGHFVIS 247 (305)
Q Consensus 213 ~fD~V~~d~~~~~-----------~~~~l~~~a~~~LkpGG~lv~s 247 (305)
.||+||-....+. ....+. .+.++|+++|++++.
T Consensus 254 g~Dvvid~~g~~~~~~~~~~~~~~~~~~~~-~~~~~l~~gG~iv~~ 298 (398)
T 2dph_A 254 EVDCGVDAVGFEAHGLGDEANTETPNGALN-SLFDVVRAGGAIGIP 298 (398)
T ss_dssp CEEEEEECSCTTCBCSGGGTTSBCTTHHHH-HHHHHEEEEEEEECC
T ss_pred CCCEEEECCCCccccccccccccccHHHHH-HHHHHHhcCCEEEEe
Confidence 6999997665432 122454 677899999998764
|
| >1f8f_A Benzyl alcohol dehydrogenase; rossmann fold, oxidoreductase; HET: NAD; 2.20A {Acinetobacter calcoaceticus} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=95.83 E-value=0.031 Score=51.39 Aligned_cols=100 Identities=18% Similarity=0.304 Sum_probs=61.5
Q ss_pred cCCCCCCEEEEEecCC-CccHHHHHhhhCCCcEEEEEeCChHHHHHHHHHHHcCCCeEEEEccCCCCcc-c-ccCCCcEe
Q 021911 139 IWIKPGARVLYLGAAS-GTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKRTNVIPIIEDARHPAK-Y-RMLVGMVD 215 (305)
Q Consensus 139 ~~~~~g~~VLDlG~G~-G~~t~~la~~~~~~~~V~avD~s~~~~~~l~~~a~~~~nI~~~~~D~~~~~~-~-~~~~~~fD 215 (305)
..++++++||-+|||+ |..+..+|+..+ ...|+++|.++... +.+++..--..+..+-.+... . ......||
T Consensus 186 ~~~~~g~~VlV~GaG~vG~~a~qlak~~G-a~~Vi~~~~~~~~~----~~a~~lGa~~vi~~~~~~~~~~~~~~~~gg~D 260 (371)
T 1f8f_A 186 LKVTPASSFVTWGAGAVGLSALLAAKVCG-ASIIIAVDIVESRL----ELAKQLGATHVINSKTQDPVAAIKEITDGGVN 260 (371)
T ss_dssp TCCCTTCEEEEESCSHHHHHHHHHHHHHT-CSEEEEEESCHHHH----HHHHHHTCSEEEETTTSCHHHHHHHHTTSCEE
T ss_pred cCCCCCCEEEEECCCHHHHHHHHHHHHcC-CCeEEEECCCHHHH----HHHHHcCCCEEecCCccCHHHHHHHhcCCCCc
Confidence 3678999999999875 677788888765 22799999998443 333322111222221111111 0 01123799
Q ss_pred EEEEeCCChhHHHHHHHHHhccCCCCcEEEEE
Q 021911 216 VIFSDVAQPDQARILALNASYFLKAGGHFVIS 247 (305)
Q Consensus 216 ~V~~d~~~~~~~~~l~~~a~~~LkpGG~lv~s 247 (305)
+||-....+. .+. .+.+.|+++|++++.
T Consensus 261 ~vid~~g~~~---~~~-~~~~~l~~~G~iv~~ 288 (371)
T 1f8f_A 261 FALESTGSPE---ILK-QGVDALGILGKIAVV 288 (371)
T ss_dssp EEEECSCCHH---HHH-HHHHTEEEEEEEEEC
T ss_pred EEEECCCCHH---HHH-HHHHHHhcCCEEEEe
Confidence 9997766543 233 666899999999875
|
| >3two_A Mannitol dehydrogenase; cinnamyl-alcohol dehydrogenase, NADP(H) oxidoreductase; HET: NDP; 2.18A {Helicobacter pylori} | Back alignment and structure |
|---|
Probab=95.82 E-value=0.012 Score=53.59 Aligned_cols=96 Identities=15% Similarity=0.096 Sum_probs=62.5
Q ss_pred ccccCCCCCCEEEEEecCC-CccHHHHHhhhCCCcEEEEEeCChHHHHHHHHHHHcCCCeEEEEccCCCCcccccCCCcE
Q 021911 136 VDNIWIKPGARVLYLGAAS-GTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKRTNVIPIIEDARHPAKYRMLVGMV 214 (305)
Q Consensus 136 l~~~~~~~g~~VLDlG~G~-G~~t~~la~~~~~~~~V~avD~s~~~~~~l~~~a~~~~nI~~~~~D~~~~~~~~~~~~~f 214 (305)
|....++++++||-+|+|+ |..+..+|+..+ .+|+++|.++... +.+++..--..+ .|. .. ....+
T Consensus 169 l~~~~~~~g~~VlV~GaG~vG~~a~qla~~~G--a~Vi~~~~~~~~~----~~~~~lGa~~v~-~~~---~~---~~~~~ 235 (348)
T 3two_A 169 LKFSKVTKGTKVGVAGFGGLGSMAVKYAVAMG--AEVSVFARNEHKK----QDALSMGVKHFY-TDP---KQ---CKEEL 235 (348)
T ss_dssp HHHTTCCTTCEEEEESCSHHHHHHHHHHHHTT--CEEEEECSSSTTH----HHHHHTTCSEEE-SSG---GG---CCSCE
T ss_pred HHhcCCCCCCEEEEECCcHHHHHHHHHHHHCC--CeEEEEeCCHHHH----HHHHhcCCCeec-CCH---HH---HhcCC
Confidence 3344688999999999864 667778888764 4899999998443 333333111222 222 11 12389
Q ss_pred eEEEEeCCChhHHHHHHHHHhccCCCCcEEEEEE
Q 021911 215 DVIFSDVAQPDQARILALNASYFLKAGGHFVISI 248 (305)
Q Consensus 215 D~V~~d~~~~~~~~~l~~~a~~~LkpGG~lv~s~ 248 (305)
|+||-....+.. +. .+.++|+++|++++.-
T Consensus 236 D~vid~~g~~~~---~~-~~~~~l~~~G~iv~~G 265 (348)
T 3two_A 236 DFIISTIPTHYD---LK-DYLKLLTYNGDLALVG 265 (348)
T ss_dssp EEEEECCCSCCC---HH-HHHTTEEEEEEEEECC
T ss_pred CEEEECCCcHHH---HH-HHHHHHhcCCEEEEEC
Confidence 999976665532 23 5668999999998863
|
| >3tos_A CALS11; methyltransferase, calicheamicin, structural genomic protein structure initiative, PSI, natPro; HET: MSE SAH GLU; 1.55A {Micromonospora echinospora} PDB: 4gf5_A* | Back alignment and structure |
|---|
Probab=95.80 E-value=0.062 Score=47.17 Aligned_cols=104 Identities=9% Similarity=0.165 Sum_probs=69.9
Q ss_pred CCEEEEEecCCCccHHHHHhh---h---CCCcEEEEEeC-----Ch----------------------HHHHHHHHHHH-
Q 021911 144 GARVLYLGAASGTTVSHVSDI---V---GPNGVVYAVEF-----SH----------------------RSGRDLVNMAK- 189 (305)
Q Consensus 144 g~~VLDlG~G~G~~t~~la~~---~---~~~~~V~avD~-----s~----------------------~~~~~l~~~a~- 189 (305)
...|+|+|+-.|..+..++.. + ++..+|+++|. .+ ..++++++...
T Consensus 70 pG~ivE~GV~rG~S~~~~a~~~~~l~~~~~~r~v~~fDTFeG~P~~~~~D~~~~~~~~G~~~~~~~~~~~l~~~l~~~~~ 149 (257)
T 3tos_A 70 PGVIMEFGVRFGRHLGTFAALRGVYEPYNPLRRIVGFDTFTGFPDVNDVDRVGPTAYQGRFAVPGGYPAYLKEVLDAHEC 149 (257)
T ss_dssp CSEEEEECCTTCHHHHHHHHHHHHHCTTCTTCCEEEEECSSCCCSCCGGGTTSTTCSTTTTCCCTTHHHHHHHHHHHHHT
T ss_pred CCeEEEEecccCHHHHHHHHHHHHhcccCCCCEEEEEECCCCCCCCccccccccccccCcccccchhHHHHHHHHHHHhh
Confidence 469999999999999887753 2 34578999983 11 11222222111
Q ss_pred -----c-CCCeEEEEccCCCCccc---ccCCCcEeEEEEeCCChh-HHHHHHHHHhccCCCCcEEEEEE
Q 021911 190 -----K-RTNVIPIIEDARHPAKY---RMLVGMVDVIFSDVAQPD-QARILALNASYFLKAGGHFVISI 248 (305)
Q Consensus 190 -----~-~~nI~~~~~D~~~~~~~---~~~~~~fD~V~~d~~~~~-~~~~l~~~a~~~LkpGG~lv~s~ 248 (305)
. ..+|+++.+++.+..+. .....+||+|++|.-... ....+. .+...|+|||.+++-.
T Consensus 150 ~~~~g~~~~~i~li~G~~~dTL~~~l~~~~~~~~dlv~ID~D~Y~~t~~~le-~~~p~l~~GGvIv~DD 217 (257)
T 3tos_A 150 SDFFGHVTQRSVLVEGDVRETVPRYLAENPQTVIALAYFDLDLYEPTKAVLE-AIRPYLTKGSIVAFDE 217 (257)
T ss_dssp TSTTTTSCCSEEEEESCHHHHHHHHHHHCTTCCEEEEEECCCCHHHHHHHHH-HHGGGEEEEEEEEESS
T ss_pred hhhcCCCCCcEEEEEecHHHHHHHHHHhCCCCceEEEEEcCcccchHHHHHH-HHHHHhCCCcEEEEcC
Confidence 1 16899999998664322 112347999999998643 344555 7889999999998865
|
| >3ps9_A TRNA 5-methylaminomethyl-2-thiouridine biosynthes bifunctional protein MNMC; rossmann fold, oxidase, methyl transferase, FAD; HET: FAD SAM; 2.54A {Escherichia coli} PDB: 3awi_A* | Back alignment and structure |
|---|
Probab=95.66 E-value=0.056 Score=53.81 Aligned_cols=124 Identities=15% Similarity=0.081 Sum_probs=75.4
Q ss_pred CCCEEEEEecCCCccHHHHHhhhC------C-----CcEEEEEeC---ChHHHHHHHH-----------HHHcC------
Q 021911 143 PGARVLYLGAASGTTVSHVSDIVG------P-----NGVVYAVEF---SHRSGRDLVN-----------MAKKR------ 191 (305)
Q Consensus 143 ~g~~VLDlG~G~G~~t~~la~~~~------~-----~~~V~avD~---s~~~~~~l~~-----------~a~~~------ 191 (305)
+.-+|||+|-|+|...+...+.+. | .-.++++|. ++.-+...++ .....
T Consensus 66 ~~~~i~e~gfG~Gln~l~~~~~~~~~~~~~p~~~~~~l~~~s~E~~p~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~ 145 (676)
T 3ps9_A 66 PLFVVAESGFGTGLNFLTLWQAFDQFREAHPQAQLQRLHFISFEKFPLTRADLALAHQHWPELAPWAEQLQAQWPMPLPG 145 (676)
T ss_dssp SEEEEEEECCTTSHHHHHHHHHHHHHHHHCTTSSCCEEEEEEEESSCCCHHHHHHHHTTCGGGHHHHHHHHHHCCCCCSE
T ss_pred CceEEEEeCCchHHHHHHHHHHHHHhhhhCcCCCCceEEEEEEeCCCCCHHHHHHHHHhChhhHHHHHHHHHhCcccCCC
Confidence 446999999999998877766541 1 235889998 5533331111 01111
Q ss_pred ----------CCeEEEEccCCCCcccc--cCCCcEeEEEEeCCCh------hHHHHHHHHHhccCCCCcEEEEEEccccc
Q 021911 192 ----------TNVIPIIEDARHPAKYR--MLVGMVDVIFSDVAQP------DQARILALNASYFLKAGGHFVISIKANCI 253 (305)
Q Consensus 192 ----------~nI~~~~~D~~~~~~~~--~~~~~fD~V~~d~~~~------~~~~~l~~~a~~~LkpGG~lv~s~~~~~i 253 (305)
-.+.+...|+.+..+.. .....||+|+.|...| +..+++. .+.++++||+.+...+ +
T Consensus 146 ~~~~~~~~~~~~l~l~~gd~~~~l~~~~~~~~~~~d~~~~D~f~p~~np~~w~~~~~~-~l~~~~~~g~~~~t~~---~- 220 (676)
T 3ps9_A 146 CHRLLLDAGRVTLDLWFGDINELTSQLDDSLNQKVDAWFLDGFAPAKNPDMWTQNLFN-AMARLARPGGTLATFT---S- 220 (676)
T ss_dssp EEEEEEGGGTEEEEEEESCHHHHGGGBCGGGTTCEEEEEECCSCGGGCGGGSCHHHHH-HHHHHEEEEEEEEESC---C-
T ss_pred ceEEEecCCcEEEEEecCCHHHHHHhcccccCCcccEEEECCCCCcCChhhhhHHHHH-HHHHHhCCCCEEEecc---C-
Confidence 12345556665432210 0135799999988743 3667776 8899999999876543 1
Q ss_pred CCCCchhhhHHHHHHHHHHCCCcEeEE
Q 021911 254 DSTVPAEAVFQSEVKKLQQDQFKPFEQ 280 (305)
Q Consensus 254 ~~~~~~~~v~~~~~~~l~~~Gf~~~e~ 280 (305)
. ......|++.||.+...
T Consensus 221 -----~----~~vr~~L~~aGf~v~~~ 238 (676)
T 3ps9_A 221 -----A----GFVRRGLQDAGFTMQKR 238 (676)
T ss_dssp -----C----HHHHHHHHHHTCEEEEE
T ss_pred -----c----HHHHHHHHhCCeEEEec
Confidence 0 12245667889987654
|
| >1boo_A Protein (N-4 cytosine-specific methyltransferase PVU II); type II DNA-(cytosine N4) methyltransferase, amino methylation, selenomethionine; HET: SAH; 2.80A {Proteus vulgaris} SCOP: c.66.1.11 | Back alignment and structure |
|---|
Probab=95.53 E-value=0.025 Score=51.33 Aligned_cols=88 Identities=13% Similarity=0.092 Sum_probs=52.9
Q ss_pred CCeEEEEccCCCCcccccCCCcEeEEEEeCCCh-----------------hHHHHHHHHHhccCCCCcEEEEEEcccccC
Q 021911 192 TNVIPIIEDARHPAKYRMLVGMVDVIFSDVAQP-----------------DQARILALNASYFLKAGGHFVISIKANCID 254 (305)
Q Consensus 192 ~nI~~~~~D~~~~~~~~~~~~~fD~V~~d~~~~-----------------~~~~~l~~~a~~~LkpGG~lv~s~~~~~i~ 254 (305)
....+++.|+...... +..++||+|++|+|-. .....+. ++.++|||+|.+++.+......
T Consensus 13 ~~~~ii~gD~~~~l~~-l~~~svDlI~tDPPY~~~~~~~y~~~~~~~~~~~l~~~l~-~~~rvLk~~G~i~i~~~d~~~~ 90 (323)
T 1boo_A 13 SNGSMYIGDSLELLES-FPEESISLVMTSPPFALQRKKEYGNLEQHEYVDWFLSFAK-VVNKKLKPDGSFVVDFGGAYMK 90 (323)
T ss_dssp SSEEEEESCHHHHGGG-SCSSCEEEEEECCCCSSSCSCSSCSCHHHHHHHHHHHHHH-HHHHHEEEEEEEEEEECCCEET
T ss_pred CCceEEeCcHHHHHhh-CCCCCeeEEEECCCCCCCcccccCCcCHHHHHHHHHHHHH-HHHHHCcCCcEEEEEECCEecC
Confidence 4577889998654321 2356899999999931 2445555 7899999999999987211000
Q ss_pred CCC-chhhhHHHHHHHHHHCCCcEeEEe
Q 021911 255 STV-PAEAVFQSEVKKLQQDQFKPFEQV 281 (305)
Q Consensus 255 ~~~-~~~~v~~~~~~~l~~~Gf~~~e~~ 281 (305)
... .....+...++.++..||.....+
T Consensus 91 g~~~~~~~~~~~i~~~~~~~Gf~~~~~i 118 (323)
T 1boo_A 91 GVPARSIYNFRVLIRMIDEVGFFLAEDF 118 (323)
T ss_dssp TEEEECCHHHHHHHHHHHTTCCEEEEEE
T ss_pred CCcccccchHHHHHHHHHhCCCEEEEEE
Confidence 000 000111222344577899876543
|
| >2vz8_A Fatty acid synthase; transferase, phosphopantetheine, multienzyme, megasynthase, fatty acid synthesis; 3.2A {Sus scrofa} PDB: 2vz9_A* | Back alignment and structure |
|---|
Probab=95.46 E-value=0.0074 Score=68.67 Aligned_cols=100 Identities=21% Similarity=0.269 Sum_probs=50.5
Q ss_pred CCCCEEEEEecCCCccHHHHHhhhCC----CcEEEEEeCChHHHHHHHHHHHcC---CCeEEEEccCCCCcccccCCCcE
Q 021911 142 KPGARVLYLGAASGTTVSHVSDIVGP----NGVVYAVEFSHRSGRDLVNMAKKR---TNVIPIIEDARHPAKYRMLVGMV 214 (305)
Q Consensus 142 ~~g~~VLDlG~G~G~~t~~la~~~~~----~~~V~avD~s~~~~~~l~~~a~~~---~nI~~~~~D~~~~~~~~~~~~~f 214 (305)
.|..+|||+|+|+|..+..+.+.+.. ..+.+-.|+|+ .+.+.++++ -+|.....|...+.. +....|
T Consensus 1239 ~~~~~ilEigagtg~~t~~il~~l~~~~~~~~~yt~td~s~----~~~~~a~~~f~~~di~~~~~d~~~~~~--~~~~~y 1312 (2512)
T 2vz8_A 1239 SPKMKVVEVLAGDGQLYSRIPALLNTQPVMDLDYTATDRNP----QALEAAQAKLEQLHVTQGQWDPANPAP--GSLGKA 1312 (2512)
T ss_dssp SSEEEEEEESCSSSCCTTTHHHHTTTSSSCEEEEEEECSSS----SSTTTTTTTHHHHTEEEECCCSSCCCC-------C
T ss_pred CCCceEEEECCCccHHHHHHHHhhcccCcccceEEEecCCh----HHHHHHHHHhhhccccccccccccccc--CCCCce
Confidence 56789999999999998888777642 22566779987 333333333 133333234333211 123579
Q ss_pred eEEEEeCC---ChhHHHHHHHHHhccCCCCcEEEEEE
Q 021911 215 DVIFSDVA---QPDQARILALNASYFLKAGGHFVISI 248 (305)
Q Consensus 215 D~V~~d~~---~~~~~~~l~~~a~~~LkpGG~lv~s~ 248 (305)
|+|++... .++....+. +++++|||+|+|++..
T Consensus 1313 dlvia~~vl~~t~~~~~~l~-~~~~lL~p~G~l~~~e 1348 (2512)
T 2vz8_A 1313 DLLVCNCALATLGDPAVAVG-NMAATLKEGGFLLLHT 1348 (2512)
T ss_dssp CEEEEECC---------------------CCEEEEEE
T ss_pred eEEEEcccccccccHHHHHH-HHHHhcCCCcEEEEEe
Confidence 99997544 345666777 9999999999998864
|
| >1pl8_A Human sorbitol dehydrogenase; NAD, oxidoreductase; HET: NAD; 1.90A {Homo sapiens} SCOP: b.35.1.2 c.2.1.1 PDB: 1pl7_A 1pl6_A* 3qe3_A | Back alignment and structure |
|---|
Probab=95.42 E-value=0.013 Score=53.69 Aligned_cols=102 Identities=20% Similarity=0.228 Sum_probs=61.4
Q ss_pred cccCCCCCCEEEEEecCC-CccHHHHHhhhCCCcEEEEEeCChHHHHHHHHHHHcCCCeEEEEcc---CCCCc-ccc-cC
Q 021911 137 DNIWIKPGARVLYLGAAS-GTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKRTNVIPIIED---ARHPA-KYR-ML 210 (305)
Q Consensus 137 ~~~~~~~g~~VLDlG~G~-G~~t~~la~~~~~~~~V~avD~s~~~~~~l~~~a~~~~nI~~~~~D---~~~~~-~~~-~~ 210 (305)
+...++++++||-+|+|+ |..+..+|+..+ ..+|+++|.++.. ++.+++..--..+..+ ..+.. ... ..
T Consensus 165 ~~~~~~~g~~VlV~GaG~vG~~aiqlak~~G-a~~Vi~~~~~~~~----~~~a~~lGa~~vi~~~~~~~~~~~~~i~~~~ 239 (356)
T 1pl8_A 165 RRGGVTLGHKVLVCGAGPIGMVTLLVAKAMG-AAQVVVTDLSATR----LSKAKEIGADLVLQISKESPQEIARKVEGQL 239 (356)
T ss_dssp HHHTCCTTCEEEEECCSHHHHHHHHHHHHTT-CSEEEEEESCHHH----HHHHHHTTCSEEEECSSCCHHHHHHHHHHHH
T ss_pred HhcCCCCCCEEEEECCCHHHHHHHHHHHHcC-CCEEEEECCCHHH----HHHHHHhCCCEEEcCcccccchHHHHHHHHh
Confidence 334688999999999864 667777887754 2389999999843 3344433111222211 00000 000 00
Q ss_pred CCcEeEEEEeCCChhHHHHHHHHHhccCCCCcEEEEE
Q 021911 211 VGMVDVIFSDVAQPDQARILALNASYFLKAGGHFVIS 247 (305)
Q Consensus 211 ~~~fD~V~~d~~~~~~~~~l~~~a~~~LkpGG~lv~s 247 (305)
...||+||-....+.. +. .+.++|+++|++++.
T Consensus 240 ~~g~D~vid~~g~~~~---~~-~~~~~l~~~G~iv~~ 272 (356)
T 1pl8_A 240 GCKPEVTIECTGAEAS---IQ-AGIYATRSGGTLVLV 272 (356)
T ss_dssp TSCCSEEEECSCCHHH---HH-HHHHHSCTTCEEEEC
T ss_pred CCCCCEEEECCCChHH---HH-HHHHHhcCCCEEEEE
Confidence 1469999977765432 33 566899999999875
|
| >1uuf_A YAHK, zinc-type alcohol dehydrogenase-like protein YAHK; oxidoreductase, zinc binding, oxydoreductase, metal-binding; 1.76A {Escherichia coli} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=95.37 E-value=0.025 Score=52.12 Aligned_cols=98 Identities=19% Similarity=0.256 Sum_probs=60.3
Q ss_pred ccCCCCCCEEEEEecCC-CccHHHHHhhhCCCcEEEEEeCChHHHHHHHHHHHcCCCeEEEEccCCCCcccccCCCcEeE
Q 021911 138 NIWIKPGARVLYLGAAS-GTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKRTNVIPIIEDARHPAKYRMLVGMVDV 216 (305)
Q Consensus 138 ~~~~~~g~~VLDlG~G~-G~~t~~la~~~~~~~~V~avD~s~~~~~~l~~~a~~~~nI~~~~~D~~~~~~~~~~~~~fD~ 216 (305)
...++++++||-+|+|+ |..+..+|+..+ .+|+++|.++...+.+.+ ..--.++ |..+..........+|+
T Consensus 189 ~~~~~~g~~VlV~GaG~vG~~aiqlak~~G--a~Vi~~~~~~~~~~~a~~----lGa~~vi--~~~~~~~~~~~~~g~Dv 260 (369)
T 1uuf_A 189 HWQAGPGKKVGVVGIGGLGHMGIKLAHAMG--AHVVAFTTSEAKREAAKA----LGADEVV--NSRNADEMAAHLKSFDF 260 (369)
T ss_dssp HTTCCTTCEEEEECCSHHHHHHHHHHHHTT--CEEEEEESSGGGHHHHHH----HTCSEEE--ETTCHHHHHTTTTCEEE
T ss_pred hcCCCCCCEEEEECCCHHHHHHHHHHHHCC--CEEEEEeCCHHHHHHHHH----cCCcEEe--ccccHHHHHHhhcCCCE
Confidence 34678999999999864 667777777754 479999999854433322 1111122 22221111111257999
Q ss_pred EEEeCCChhHHHHHHHHHhccCCCCcEEEEE
Q 021911 217 IFSDVAQPDQARILALNASYFLKAGGHFVIS 247 (305)
Q Consensus 217 V~~d~~~~~~~~~l~~~a~~~LkpGG~lv~s 247 (305)
||-....+.. +. .+.+.|+++|+++..
T Consensus 261 vid~~g~~~~---~~-~~~~~l~~~G~iv~~ 287 (369)
T 1uuf_A 261 ILNTVAAPHN---LD-DFTTLLKRDGTMTLV 287 (369)
T ss_dssp EEECCSSCCC---HH-HHHTTEEEEEEEEEC
T ss_pred EEECCCCHHH---HH-HHHHHhccCCEEEEe
Confidence 9976665432 22 556899999998874
|
| >3fwz_A Inner membrane protein YBAL; TRKA-N domain, E.coli, structural genomics, PSI-2, Pro structure initiative; HET: MSE AMP; 1.79A {Escherichia coli k-12} | Back alignment and structure |
|---|
Probab=95.30 E-value=0.11 Score=40.56 Aligned_cols=97 Identities=10% Similarity=0.111 Sum_probs=64.9
Q ss_pred CCEEEEEecCCCccHHHHHhhhC-CCcEEEEEeCChHHHHHHHHHHHcCCCeEEEEccCCCCccccc-CCCcEeEEEEeC
Q 021911 144 GARVLYLGAASGTTVSHVSDIVG-PNGVVYAVEFSHRSGRDLVNMAKKRTNVIPIIEDARHPAKYRM-LVGMVDVIFSDV 221 (305)
Q Consensus 144 g~~VLDlG~G~G~~t~~la~~~~-~~~~V~avD~s~~~~~~l~~~a~~~~nI~~~~~D~~~~~~~~~-~~~~fD~V~~d~ 221 (305)
..+|+=+|| |.+...+++.+. ....|+++|.++.. ++.+++ ..+.++..|+++...... ....+|+|++..
T Consensus 7 ~~~viIiG~--G~~G~~la~~L~~~g~~v~vid~~~~~----~~~~~~-~g~~~i~gd~~~~~~l~~a~i~~ad~vi~~~ 79 (140)
T 3fwz_A 7 CNHALLVGY--GRVGSLLGEKLLASDIPLVVIETSRTR----VDELRE-RGVRAVLGNAANEEIMQLAHLECAKWLILTI 79 (140)
T ss_dssp CSCEEEECC--SHHHHHHHHHHHHTTCCEEEEESCHHH----HHHHHH-TTCEEEESCTTSHHHHHHTTGGGCSEEEECC
T ss_pred CCCEEEECc--CHHHHHHHHHHHHCCCCEEEEECCHHH----HHHHHH-cCCCEEECCCCCHHHHHhcCcccCCEEEEEC
Confidence 357877776 667777777653 23479999999944 333333 467889999987653321 235799999888
Q ss_pred CChhHHHHHHHHHhccCCCCcEEEEEE
Q 021911 222 AQPDQARILALNASYFLKAGGHFVISI 248 (305)
Q Consensus 222 ~~~~~~~~l~~~a~~~LkpGG~lv~s~ 248 (305)
+.......+. ...+.+.|..+++...
T Consensus 80 ~~~~~n~~~~-~~a~~~~~~~~iiar~ 105 (140)
T 3fwz_A 80 PNGYEAGEIV-ASARAKNPDIEIIARA 105 (140)
T ss_dssp SCHHHHHHHH-HHHHHHCSSSEEEEEE
T ss_pred CChHHHHHHH-HHHHHHCCCCeEEEEE
Confidence 8776665555 4556677777766554
|
| >3av4_A DNA (cytosine-5)-methyltransferase 1; CXXC-type zinc finger/C5-methyltransferase family; HET: DNA; 2.75A {Mus musculus} PDB: 3av5_A* 3av6_A* | Back alignment and structure |
|---|
Probab=95.20 E-value=0.12 Score=55.22 Aligned_cols=147 Identities=13% Similarity=0.121 Sum_probs=87.7
Q ss_pred CCEEEEEecCCCccHHHHHhhhCCCcEEEEEeCChHHHHHHHHHHHcCCCeEEEEccCCCCc------------cccc-C
Q 021911 144 GARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKRTNVIPIIEDARHPA------------KYRM-L 210 (305)
Q Consensus 144 g~~VLDlG~G~G~~t~~la~~~~~~~~V~avD~s~~~~~~l~~~a~~~~nI~~~~~D~~~~~------------~~~~-~ 210 (305)
..++|||+||.|.++.-+... +-.-.|.++|+++.+......+ .++..++..|+.... .... .
T Consensus 851 ~l~viDLFsG~GGlslGfe~A-G~~~vv~avEid~~A~~ty~~N---~p~~~~~~~DI~~l~~~~~~gdi~~~~~~~lp~ 926 (1330)
T 3av4_A 851 KLRTLDVFSGCGGLSEGFHQA-GISETLWAIEMWDPAAQAFRLN---NPGTTVFTEDCNVLLKLVMAGEVTNSLGQRLPQ 926 (1330)
T ss_dssp CEEEEEETCTTSHHHHHHHHT-TSEEEEEEECCSHHHHHHHHHH---CTTSEEECSCHHHHHHHHTTTCSBCSSCCBCCC
T ss_pred CceEEecccCccHHHHHHHHC-CCCceEEEEECCHHHHHHHHHh---CCCCcEeeccHHHHhHhhhccchhhhhhhhccc
Confidence 468999999999999988765 2112588999999543332222 245566666653221 0000 1
Q ss_pred CCcEeEEEEeCCChh--------------HHH-H---HHHHHhccCCCCcEEEEEEcccccCCCCchhhhHHHHHHHHHH
Q 021911 211 VGMVDVIFSDVAQPD--------------QAR-I---LALNASYFLKAGGHFVISIKANCIDSTVPAEAVFQSEVKKLQQ 272 (305)
Q Consensus 211 ~~~fD~V~~d~~~~~--------------~~~-~---l~~~a~~~LkpGG~lv~s~~~~~i~~~~~~~~v~~~~~~~l~~ 272 (305)
...+|+|+.-+||.. ... + +. .+...++|- +|++.-... +.+. ....+|...+..|.+
T Consensus 927 ~~~vDvl~GGpPCQ~FS~agr~~~~~~~d~R~~L~~~~l-riv~~~rPk-~fv~ENV~g-lls~-~~g~~~~~il~~L~~ 1002 (1330)
T 3av4_A 927 KGDVEMLCGGPPCQGFSGMNRFNSRTYSKFKNSLVVSFL-SYCDYYRPR-FFLLENVRN-FVSY-RRSMVLKLTLRCLVR 1002 (1330)
T ss_dssp TTTCSEEEECCCCTTTCSSSCCCHHHHHHHHHSHHHHHH-HHHHHHCCS-EEEEEEEGG-GGTT-TTTHHHHHHHHHHHH
T ss_pred cCccceEEecCCCcccccccccccccccchhhHHHHHHH-HHHHHhcCc-EEEEeccHH-Hhcc-CccHHHHHHHHHHHh
Confidence 247899999888531 111 1 22 345567896 444442111 2111 123456666788888
Q ss_pred CCCcEeEEe-ec----CCCCCceEEEEEEEc
Q 021911 273 DQFKPFEQV-TL----EPFERDHACVVGGYR 298 (305)
Q Consensus 273 ~Gf~~~e~~-~l----~p~~~~~~~vv~~~~ 298 (305)
.||.+...+ .. -|..|..+++||...
T Consensus 1003 lGY~v~~~vLnA~dyGVPQ~R~Rvfivg~r~ 1033 (1330)
T 3av4_A 1003 MGYQCTFGVLQAGQYGVAQTRRRAIILAAAP 1033 (1330)
T ss_dssp HTCEEEEEEEEGGGGSCSBCCEEEEEEEECT
T ss_pred cCCeeeEEEecHHHcCCCccccEEEEEEecC
Confidence 899876543 22 567889999999754
|
| >1g60_A Adenine-specific methyltransferase MBOIIA; structural genomics, DNA methylation, S- adenosylmethionine, PSI, protein structure initiative; HET: SAM; 1.74A {Moraxella bovis} SCOP: c.66.1.11 | Back alignment and structure |
|---|
Probab=95.11 E-value=0.029 Score=49.13 Aligned_cols=76 Identities=9% Similarity=-0.147 Sum_probs=47.6
Q ss_pred eEEEEccCCCCcccccCCCcEeEEEEeCCCh-----------------hHHHHHHHHHhccCCCCcEEEEEEcccccCCC
Q 021911 194 VIPIIEDARHPAKYRMLVGMVDVIFSDVAQP-----------------DQARILALNASYFLKAGGHFVISIKANCIDST 256 (305)
Q Consensus 194 I~~~~~D~~~~~~~~~~~~~fD~V~~d~~~~-----------------~~~~~l~~~a~~~LkpGG~lv~s~~~~~i~~~ 256 (305)
..+++.|+...... ...++||+|++|+|.. .....+. .+.++|+|+|.+++.+ +.
T Consensus 5 ~~l~~gD~~~~l~~-l~~~~vdlI~~DPPY~~~~~~~d~~~~~~~y~~~~~~~l~-~~~~~Lk~~g~i~v~~--~d---- 76 (260)
T 1g60_A 5 NKIHQMNCFDFLDQ-VENKSVQLAVIDPPYNLSKADWDSFDSHNEFLAFTYRWID-KVLDKLDKDGSLYIFN--TP---- 76 (260)
T ss_dssp SSEEECCHHHHHHH-SCTTCEEEEEECCCCSSCSSGGGCCSSHHHHHHHHHHHHH-HHHHHEEEEEEEEEEE--CH----
T ss_pred CeEEechHHHHHHh-ccccccCEEEECCCCCCCcccccccCCHHHHHHHHHHHHH-HHHHHhcCCeEEEEEc--Cc----
Confidence 34677887554322 2346899999999931 2234444 7889999999999986 11
Q ss_pred CchhhhHHHHHHHHHHCCCcEeEEe
Q 021911 257 VPAEAVFQSEVKKLQQDQFKPFEQV 281 (305)
Q Consensus 257 ~~~~~v~~~~~~~l~~~Gf~~~e~~ 281 (305)
.. ....+..+.+.+|.....+
T Consensus 77 --~~--~~~~~~~~~~~gf~~~~~i 97 (260)
T 1g60_A 77 --FN--CAFICQYLVSKGMIFQNWI 97 (260)
T ss_dssp --HH--HHHHHHHHHHTTCEEEEEE
T ss_pred --HH--HHHHHHHHHhhccceeEEE
Confidence 11 1122345667888876544
|
| >4ej6_A Putative zinc-binding dehydrogenase; structural genomics, nysgrc, PSI-biology, NEW YORK structura genomics research consortium; 1.89A {Sinorhizobium meliloti} PDB: 4ejm_A* | Back alignment and structure |
|---|
Probab=95.11 E-value=0.043 Score=50.53 Aligned_cols=102 Identities=22% Similarity=0.275 Sum_probs=61.6
Q ss_pred cccCCCCCCEEEEEecCC-CccHHHHHhhhCCCcEEEEEeCChHHHHHHHHHHHcCCCeEEEEccCCCCcc-cc----cC
Q 021911 137 DNIWIKPGARVLYLGAAS-GTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKRTNVIPIIEDARHPAK-YR----ML 210 (305)
Q Consensus 137 ~~~~~~~g~~VLDlG~G~-G~~t~~la~~~~~~~~V~avD~s~~~~~~l~~~a~~~~nI~~~~~D~~~~~~-~~----~~ 210 (305)
+...++++++||-+|+|+ |..+..+|+..+ ..+|+++|.++.. ++.+++..--..+..+-.+... .. ..
T Consensus 176 ~~~~~~~g~~VlV~GaG~vG~~aiqlak~~G-a~~Vi~~~~~~~~----~~~a~~lGa~~vi~~~~~~~~~~i~~~~~~~ 250 (370)
T 4ej6_A 176 DLSGIKAGSTVAILGGGVIGLLTVQLARLAG-ATTVILSTRQATK----RRLAEEVGATATVDPSAGDVVEAIAGPVGLV 250 (370)
T ss_dssp HHHTCCTTCEEEEECCSHHHHHHHHHHHHTT-CSEEEEECSCHHH----HHHHHHHTCSEEECTTSSCHHHHHHSTTSSS
T ss_pred HhcCCCCCCEEEEECCCHHHHHHHHHHHHcC-CCEEEEECCCHHH----HHHHHHcCCCEEECCCCcCHHHHHHhhhhcc
Confidence 334788999999999864 667777777764 2389999999844 3333332111122111111110 00 11
Q ss_pred CCcEeEEEEeCCChhHHHHHHHHHhccCCCCcEEEEE
Q 021911 211 VGMVDVIFSDVAQPDQARILALNASYFLKAGGHFVIS 247 (305)
Q Consensus 211 ~~~fD~V~~d~~~~~~~~~l~~~a~~~LkpGG~lv~s 247 (305)
.+.||+||-....+.. +. .+.++|+++|++++.
T Consensus 251 ~gg~Dvvid~~G~~~~---~~-~~~~~l~~~G~vv~~ 283 (370)
T 4ej6_A 251 PGGVDVVIECAGVAET---VK-QSTRLAKAGGTVVIL 283 (370)
T ss_dssp TTCEEEEEECSCCHHH---HH-HHHHHEEEEEEEEEC
T ss_pred CCCCCEEEECCCCHHH---HH-HHHHHhccCCEEEEE
Confidence 2479999976665433 33 566899999999885
|
| >1lss_A TRK system potassium uptake protein TRKA homolog; KTN domain, NAD, RCK domain, potassium transport, potassium channel, KTRA; HET: NAD; 2.30A {Methanocaldococcus jannaschii} SCOP: c.2.1.9 | Back alignment and structure |
|---|
Probab=94.99 E-value=0.089 Score=40.44 Aligned_cols=97 Identities=8% Similarity=0.093 Sum_probs=59.4
Q ss_pred CCEEEEEecCCCccHHHHHhhhC-CCcEEEEEeCChHHHHHHHHHHHcCCCeEEEEccCCCCcccc-cCCCcEeEEEEeC
Q 021911 144 GARVLYLGAASGTTVSHVSDIVG-PNGVVYAVEFSHRSGRDLVNMAKKRTNVIPIIEDARHPAKYR-MLVGMVDVIFSDV 221 (305)
Q Consensus 144 g~~VLDlG~G~G~~t~~la~~~~-~~~~V~avD~s~~~~~~l~~~a~~~~nI~~~~~D~~~~~~~~-~~~~~fD~V~~d~ 221 (305)
+++|+-+|+ |.....++..+. ....|+.+|.++...+. +.+...+.++..|..+..... .....+|+|++..
T Consensus 4 ~m~i~IiG~--G~iG~~~a~~L~~~g~~v~~~d~~~~~~~~----~~~~~~~~~~~~d~~~~~~l~~~~~~~~d~vi~~~ 77 (140)
T 1lss_A 4 GMYIIIAGI--GRVGYTLAKSLSEKGHDIVLIDIDKDICKK----ASAEIDALVINGDCTKIKTLEDAGIEDADMYIAVT 77 (140)
T ss_dssp -CEEEEECC--SHHHHHHHHHHHHTTCEEEEEESCHHHHHH----HHHHCSSEEEESCTTSHHHHHHTTTTTCSEEEECC
T ss_pred CCEEEEECC--CHHHHHHHHHHHhCCCeEEEEECCHHHHHH----HHHhcCcEEEEcCCCCHHHHHHcCcccCCEEEEee
Confidence 367887765 778888776652 23479999999844332 222225667778876543321 1135789999988
Q ss_pred CChhHHHHHHHHHhccCCCCcEEEEEE
Q 021911 222 AQPDQARILALNASYFLKAGGHFVISI 248 (305)
Q Consensus 222 ~~~~~~~~l~~~a~~~LkpGG~lv~s~ 248 (305)
+.......+. .+.+.+.+. .+++.+
T Consensus 78 ~~~~~~~~~~-~~~~~~~~~-~ii~~~ 102 (140)
T 1lss_A 78 GKEEVNLMSS-LLAKSYGIN-KTIARI 102 (140)
T ss_dssp SCHHHHHHHH-HHHHHTTCC-CEEEEC
T ss_pred CCchHHHHHH-HHHHHcCCC-EEEEEe
Confidence 7665444444 455557775 555543
|
| >3c85_A Putative glutathione-regulated potassium-efflux S protein KEFB; TRKA domain; HET: AMP; 1.90A {Vibrio parahaemolyticus rimd 2210633} | Back alignment and structure |
|---|
Probab=94.96 E-value=0.11 Score=42.44 Aligned_cols=97 Identities=15% Similarity=0.200 Sum_probs=62.7
Q ss_pred CCEEEEEecCCCccHHHHHhhhCC--CcEEEEEeCChHHHHHHHHHHHcCCCeEEEEccCCCCcccccC--CCcEeEEEE
Q 021911 144 GARVLYLGAASGTTVSHVSDIVGP--NGVVYAVEFSHRSGRDLVNMAKKRTNVIPIIEDARHPAKYRML--VGMVDVIFS 219 (305)
Q Consensus 144 g~~VLDlG~G~G~~t~~la~~~~~--~~~V~avD~s~~~~~~l~~~a~~~~nI~~~~~D~~~~~~~~~~--~~~fD~V~~ 219 (305)
+++|+-+|+ |.....+++.+.. ...|+++|.++...+ .+++ ..+..+..|..+....... ...+|+|++
T Consensus 39 ~~~v~IiG~--G~~G~~~a~~L~~~~g~~V~vid~~~~~~~----~~~~-~g~~~~~gd~~~~~~l~~~~~~~~ad~vi~ 111 (183)
T 3c85_A 39 HAQVLILGM--GRIGTGAYDELRARYGKISLGIEIREEAAQ----QHRS-EGRNVISGDATDPDFWERILDTGHVKLVLL 111 (183)
T ss_dssp TCSEEEECC--SHHHHHHHHHHHHHHCSCEEEEESCHHHHH----HHHH-TTCCEEECCTTCHHHHHTBCSCCCCCEEEE
T ss_pred CCcEEEECC--CHHHHHHHHHHHhccCCeEEEEECCHHHHH----HHHH-CCCCEEEcCCCCHHHHHhccCCCCCCEEEE
Confidence 567888765 6777777765532 347999999984433 3333 2566777888765432222 457899998
Q ss_pred eCCChhHHHHHHHHHhccCCCCcEEEEEE
Q 021911 220 DVAQPDQARILALNASYFLKAGGHFVISI 248 (305)
Q Consensus 220 d~~~~~~~~~l~~~a~~~LkpGG~lv~s~ 248 (305)
..+.......+. .+.+.+.|...++..+
T Consensus 112 ~~~~~~~~~~~~-~~~~~~~~~~~ii~~~ 139 (183)
T 3c85_A 112 AMPHHQGNQTAL-EQLQRRNYKGQIAAIA 139 (183)
T ss_dssp CCSSHHHHHHHH-HHHHHTTCCSEEEEEE
T ss_pred eCCChHHHHHHH-HHHHHHCCCCEEEEEE
Confidence 777665555554 4555677777777665
|
| >1e3j_A NADP(H)-dependent ketose reductase; oxidoreductase, fructose reduction; 2.3A {Bemisia argentifolii} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=94.90 E-value=0.088 Score=47.88 Aligned_cols=100 Identities=16% Similarity=0.244 Sum_probs=60.2
Q ss_pred ccCCCCCCEEEEEecCC-CccHHHHHhhhCCCcEEEEEeCChHHHHHHHHHHHcCCCeEEEEccC-CCCc-ccc-cC---
Q 021911 138 NIWIKPGARVLYLGAAS-GTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKRTNVIPIIEDA-RHPA-KYR-ML--- 210 (305)
Q Consensus 138 ~~~~~~g~~VLDlG~G~-G~~t~~la~~~~~~~~V~avD~s~~~~~~l~~~a~~~~nI~~~~~D~-~~~~-~~~-~~--- 210 (305)
...++++++||-+|+|. |..+..+|+..+ .+|+++|.++.. ++.+++..--..+..+- .+.. ... ..
T Consensus 163 ~~~~~~g~~VlV~GaG~vG~~a~qla~~~G--a~Vi~~~~~~~~----~~~~~~lGa~~~~~~~~~~~~~~~i~~~~~~~ 236 (352)
T 1e3j_A 163 RAGVQLGTTVLVIGAGPIGLVSVLAAKAYG--AFVVCTARSPRR----LEVAKNCGADVTLVVDPAKEEESSIIERIRSA 236 (352)
T ss_dssp HHTCCTTCEEEEECCSHHHHHHHHHHHHTT--CEEEEEESCHHH----HHHHHHTTCSEEEECCTTTSCHHHHHHHHHHH
T ss_pred hcCCCCCCEEEEECCCHHHHHHHHHHHHcC--CEEEEEcCCHHH----HHHHHHhCCCEEEcCcccccHHHHHHHHhccc
Confidence 34688999999999754 556777777754 469999999844 33343331112222110 1111 110 01
Q ss_pred -CCcEeEEEEeCCChhHHHHHHHHHhccCCCCcEEEEE
Q 021911 211 -VGMVDVIFSDVAQPDQARILALNASYFLKAGGHFVIS 247 (305)
Q Consensus 211 -~~~fD~V~~d~~~~~~~~~l~~~a~~~LkpGG~lv~s 247 (305)
...+|+||-....+.. +. .+.++|+++|++++.
T Consensus 237 ~g~g~D~vid~~g~~~~---~~-~~~~~l~~~G~iv~~ 270 (352)
T 1e3j_A 237 IGDLPNVTIDCSGNEKC---IT-IGINITRTGGTLMLV 270 (352)
T ss_dssp SSSCCSEEEECSCCHHH---HH-HHHHHSCTTCEEEEC
T ss_pred cCCCCCEEEECCCCHHH---HH-HHHHHHhcCCEEEEE
Confidence 2469999977765432 33 566899999999875
|
| >3jv7_A ADH-A; dehydrogenase, nucleotide binding, rossmann-fold, oxidoreduc; HET: NAD; 2.00A {Rhodococcus ruber} PDB: 2xaa_A* | Back alignment and structure |
|---|
Probab=94.80 E-value=0.045 Score=49.66 Aligned_cols=98 Identities=17% Similarity=0.261 Sum_probs=61.8
Q ss_pred CCCCCCEEEEEecCC-CccHHHHHhhhCCCcEEEEEeCChHHHHHHHHHHHcCCCeEEEEccCCCCcc-cc--cCCCcEe
Q 021911 140 WIKPGARVLYLGAAS-GTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKRTNVIPIIEDARHPAK-YR--MLVGMVD 215 (305)
Q Consensus 140 ~~~~g~~VLDlG~G~-G~~t~~la~~~~~~~~V~avD~s~~~~~~l~~~a~~~~nI~~~~~D~~~~~~-~~--~~~~~fD 215 (305)
.++++++||-+|+|+ |..+..+|+..+ ..+|+++|.++.. ++.+++..--..+..+- +... .. .....+|
T Consensus 168 ~~~~g~~vlv~GaG~vG~~a~qla~~~g-~~~Vi~~~~~~~~----~~~~~~lGa~~~i~~~~-~~~~~v~~~t~g~g~d 241 (345)
T 3jv7_A 168 LLGPGSTAVVIGVGGLGHVGIQILRAVS-AARVIAVDLDDDR----LALAREVGADAAVKSGA-GAADAIRELTGGQGAT 241 (345)
T ss_dssp GCCTTCEEEEECCSHHHHHHHHHHHHHC-CCEEEEEESCHHH----HHHHHHTTCSEEEECST-THHHHHHHHHGGGCEE
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHcC-CCEEEEEcCCHHH----HHHHHHcCCCEEEcCCC-cHHHHHHHHhCCCCCe
Confidence 578899999999864 667778887763 3589999999843 34444432112222211 1111 00 0123799
Q ss_pred EEEEeCCChhHHHHHHHHHhccCCCCcEEEEE
Q 021911 216 VIFSDVAQPDQARILALNASYFLKAGGHFVIS 247 (305)
Q Consensus 216 ~V~~d~~~~~~~~~l~~~a~~~LkpGG~lv~s 247 (305)
+||-....+.. +. .+.++|+++|++++.
T Consensus 242 ~v~d~~G~~~~---~~-~~~~~l~~~G~iv~~ 269 (345)
T 3jv7_A 242 AVFDFVGAQST---ID-TAQQVVAVDGHISVV 269 (345)
T ss_dssp EEEESSCCHHH---HH-HHHHHEEEEEEEEEC
T ss_pred EEEECCCCHHH---HH-HHHHHHhcCCEEEEE
Confidence 99987776532 33 666899999999875
|
| >3m6i_A L-arabinitol 4-dehydrogenase; medium chain dehydrogenase/reductase, oxidoreductase; HET: NAD; 2.60A {Neurospora crassa} | Back alignment and structure |
|---|
Probab=94.76 E-value=0.036 Score=50.71 Aligned_cols=105 Identities=13% Similarity=0.094 Sum_probs=64.5
Q ss_pred ccccCCCCCCEEEEEecCC-CccHHHHHhhhCCCcEEEEEeCChHHHHHHHHHHHcCCCeEEEEccCCCCcc------cc
Q 021911 136 VDNIWIKPGARVLYLGAAS-GTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKRTNVIPIIEDARHPAK------YR 208 (305)
Q Consensus 136 l~~~~~~~g~~VLDlG~G~-G~~t~~la~~~~~~~~V~avD~s~~~~~~l~~~a~~~~nI~~~~~D~~~~~~------~~ 208 (305)
|+...++++++||-+|+|+ |..+..+|+..+. ..|+++|.++...+.+.+. . +.+.....|...... ..
T Consensus 172 l~~~~~~~g~~VlV~GaG~vG~~aiqlak~~Ga-~~Vi~~~~~~~~~~~a~~l-~--~~~~~~~~~~~~~~~~~~~v~~~ 247 (363)
T 3m6i_A 172 LQRAGVRLGDPVLICGAGPIGLITMLCAKAAGA-CPLVITDIDEGRLKFAKEI-C--PEVVTHKVERLSAEESAKKIVES 247 (363)
T ss_dssp HHHHTCCTTCCEEEECCSHHHHHHHHHHHHTTC-CSEEEEESCHHHHHHHHHH-C--TTCEEEECCSCCHHHHHHHHHHH
T ss_pred HHHcCCCCCCEEEEECCCHHHHHHHHHHHHcCC-CEEEEECCCHHHHHHHHHh-c--hhcccccccccchHHHHHHHHHH
Confidence 3444788999999999864 6677788877642 2499999998655444443 2 223222222111110 00
Q ss_pred cCCCcEeEEEEeCCChhHHHHHHHHHhccCCCCcEEEEEE
Q 021911 209 MLVGMVDVIFSDVAQPDQARILALNASYFLKAGGHFVISI 248 (305)
Q Consensus 209 ~~~~~fD~V~~d~~~~~~~~~l~~~a~~~LkpGG~lv~s~ 248 (305)
.....+|+||-....+.. +. .+.++|+++|++++.-
T Consensus 248 t~g~g~Dvvid~~g~~~~---~~-~~~~~l~~~G~iv~~G 283 (363)
T 3m6i_A 248 FGGIEPAVALECTGVESS---IA-AAIWAVKFGGKVFVIG 283 (363)
T ss_dssp TSSCCCSEEEECSCCHHH---HH-HHHHHSCTTCEEEECC
T ss_pred hCCCCCCEEEECCCChHH---HH-HHHHHhcCCCEEEEEc
Confidence 112479999977765532 33 5668999999998853
|
| >1kol_A Formaldehyde dehydrogenase; oxidoreductase; HET: NAD; 1.65A {Pseudomonas putida} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=94.68 E-value=0.014 Score=54.28 Aligned_cols=102 Identities=18% Similarity=0.183 Sum_probs=62.8
Q ss_pred cCCCCCCEEEEEecCC-CccHHHHHhhhCCCcEEEEEeCChHHHHHHHHHHHcCCCeEEEEccCCC-Ccc-cc--cCCCc
Q 021911 139 IWIKPGARVLYLGAAS-GTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKRTNVIPIIEDARH-PAK-YR--MLVGM 213 (305)
Q Consensus 139 ~~~~~g~~VLDlG~G~-G~~t~~la~~~~~~~~V~avD~s~~~~~~l~~~a~~~~nI~~~~~D~~~-~~~-~~--~~~~~ 213 (305)
..++++++||-+|||+ |..+..+|+.++ ...|+++|.++.. ++.+++. .+..+..+-.+ +.. .. .....
T Consensus 181 ~~~~~g~~VlV~GaG~vG~~aiqlAk~~G-a~~Vi~~~~~~~~----~~~a~~l-Ga~~i~~~~~~~~~~~v~~~t~g~g 254 (398)
T 1kol_A 181 AGVGPGSTVYVAGAGPVGLAAAASARLLG-AAVVIVGDLNPAR----LAHAKAQ-GFEIADLSLDTPLHEQIAALLGEPE 254 (398)
T ss_dssp TTCCTTCEEEEECCSHHHHHHHHHHHHTT-CSEEEEEESCHHH----HHHHHHT-TCEEEETTSSSCHHHHHHHHHSSSC
T ss_pred cCCCCCCEEEEECCcHHHHHHHHHHHHCC-CCeEEEEcCCHHH----HHHHHHc-CCcEEccCCcchHHHHHHHHhCCCC
Confidence 4678999999999865 667788888764 2379999999843 4444443 22333221111 110 00 01236
Q ss_pred EeEEEEeCCChh------------HHHHHHHHHhccCCCCcEEEEE
Q 021911 214 VDVIFSDVAQPD------------QARILALNASYFLKAGGHFVIS 247 (305)
Q Consensus 214 fD~V~~d~~~~~------------~~~~l~~~a~~~LkpGG~lv~s 247 (305)
+|+||-....+. ....+. .+.++|+++|++++.
T Consensus 255 ~Dvvid~~G~~~~~~~~~~~~~~~~~~~~~-~~~~~l~~~G~iv~~ 299 (398)
T 1kol_A 255 VDCAVDAVGFEARGHGHEGAKHEAPATVLN-SLMQVTRVAGKIGIP 299 (398)
T ss_dssp EEEEEECCCTTCBCSSTTGGGSBCTTHHHH-HHHHHEEEEEEEEEC
T ss_pred CCEEEECCCCcccccccccccccchHHHHH-HHHHHHhcCCEEEEe
Confidence 999997665331 223455 777899999999775
|
| >2g1u_A Hypothetical protein TM1088A; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: AMP; 1.50A {Thermotoga maritima} PDB: 3l4b_A* | Back alignment and structure |
|---|
Probab=94.44 E-value=0.088 Score=41.90 Aligned_cols=100 Identities=9% Similarity=0.169 Sum_probs=61.1
Q ss_pred CCCCEEEEEecCCCccHHHHHhhhC-CCcEEEEEeCChHHHHHHHHHHHcCCCeEEEEccCCCCcccccC-CCcEeEEEE
Q 021911 142 KPGARVLYLGAASGTTVSHVSDIVG-PNGVVYAVEFSHRSGRDLVNMAKKRTNVIPIIEDARHPAKYRML-VGMVDVIFS 219 (305)
Q Consensus 142 ~~g~~VLDlG~G~G~~t~~la~~~~-~~~~V~avD~s~~~~~~l~~~a~~~~nI~~~~~D~~~~~~~~~~-~~~fD~V~~ 219 (305)
.++++|+-+|| |.+...++..+. ....|+.+|.++.. ++.++....+.++..|..+....... ...+|+|++
T Consensus 17 ~~~~~v~IiG~--G~iG~~la~~L~~~g~~V~vid~~~~~----~~~~~~~~g~~~~~~d~~~~~~l~~~~~~~ad~Vi~ 90 (155)
T 2g1u_A 17 QKSKYIVIFGC--GRLGSLIANLASSSGHSVVVVDKNEYA----FHRLNSEFSGFTVVGDAAEFETLKECGMEKADMVFA 90 (155)
T ss_dssp CCCCEEEEECC--SHHHHHHHHHHHHTTCEEEEEESCGGG----GGGSCTTCCSEEEESCTTSHHHHHTTTGGGCSEEEE
T ss_pred cCCCcEEEECC--CHHHHHHHHHHHhCCCeEEEEECCHHH----HHHHHhcCCCcEEEecCCCHHHHHHcCcccCCEEEE
Confidence 45789999886 677777766542 23489999999833 22332123466677777654322111 347899999
Q ss_pred eCCChhHHHHHHHHHhccCCCCcEEEEEE
Q 021911 220 DVAQPDQARILALNASYFLKAGGHFVISI 248 (305)
Q Consensus 220 d~~~~~~~~~l~~~a~~~LkpGG~lv~s~ 248 (305)
..+.+.....+. .+.+.+.+...++...
T Consensus 91 ~~~~~~~~~~~~-~~~~~~~~~~~iv~~~ 118 (155)
T 2g1u_A 91 FTNDDSTNFFIS-MNARYMFNVENVIARV 118 (155)
T ss_dssp CSSCHHHHHHHH-HHHHHTSCCSEEEEEC
T ss_pred EeCCcHHHHHHH-HHHHHHCCCCeEEEEE
Confidence 888766555555 4555555655555554
|
| >3ic5_A Putative saccharopine dehydrogenase; structural genomics, APC63807.2, N-terminal domain, saccharo dehydrogenase, PSI-2; HET: MSE; 2.08A {Ruegeria pomeroyi} | Back alignment and structure |
|---|
Probab=94.39 E-value=0.14 Score=38.07 Aligned_cols=81 Identities=16% Similarity=0.094 Sum_probs=54.4
Q ss_pred CCEEEEEecCCCccHHHHHhhhCC-C-cEEEEEeCChHHHHHHHHHHHcCCCeEEEEccCCCCcccccCCCcEeEEEEeC
Q 021911 144 GARVLYLGAASGTTVSHVSDIVGP-N-GVVYAVEFSHRSGRDLVNMAKKRTNVIPIIEDARHPAKYRMLVGMVDVIFSDV 221 (305)
Q Consensus 144 g~~VLDlG~G~G~~t~~la~~~~~-~-~~V~avD~s~~~~~~l~~~a~~~~nI~~~~~D~~~~~~~~~~~~~fD~V~~d~ 221 (305)
.++|+-+|+ |.....++..+.. . .+|+++|.++..... +. ...+.++..|+.+..........+|+|+...
T Consensus 5 ~~~v~I~G~--G~iG~~~~~~l~~~g~~~v~~~~r~~~~~~~----~~-~~~~~~~~~d~~~~~~~~~~~~~~d~vi~~~ 77 (118)
T 3ic5_A 5 RWNICVVGA--GKIGQMIAALLKTSSNYSVTVADHDLAALAV----LN-RMGVATKQVDAKDEAGLAKALGGFDAVISAA 77 (118)
T ss_dssp CEEEEEECC--SHHHHHHHHHHHHCSSEEEEEEESCHHHHHH----HH-TTTCEEEECCTTCHHHHHHHTTTCSEEEECS
T ss_pred cCeEEEECC--CHHHHHHHHHHHhCCCceEEEEeCCHHHHHH----HH-hCCCcEEEecCCCHHHHHHHHcCCCEEEECC
Confidence 468999988 7777777765422 2 579999999844333 22 3467888889877644322345789999988
Q ss_pred CChhHHHHHH
Q 021911 222 AQPDQARILA 231 (305)
Q Consensus 222 ~~~~~~~~l~ 231 (305)
+......++.
T Consensus 78 ~~~~~~~~~~ 87 (118)
T 3ic5_A 78 PFFLTPIIAK 87 (118)
T ss_dssp CGGGHHHHHH
T ss_pred CchhhHHHHH
Confidence 7655544444
|
| >3uog_A Alcohol dehydrogenase; structural genomics, protein structure initiative, PSI-biolo YORK structural genomics research consortium; 2.20A {Sinorhizobium meliloti 1021} | Back alignment and structure |
|---|
Probab=94.38 E-value=0.082 Score=48.38 Aligned_cols=100 Identities=13% Similarity=0.009 Sum_probs=61.3
Q ss_pred ccCCCCCCEEEEEecCC-CccHHHHHhhhCCCcEEEEEeCChHHHHHHHHHHHcCCCeEEEEccCCCCcc-cc--cCCCc
Q 021911 138 NIWIKPGARVLYLGAAS-GTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKRTNVIPIIEDARHPAK-YR--MLVGM 213 (305)
Q Consensus 138 ~~~~~~g~~VLDlG~G~-G~~t~~la~~~~~~~~V~avD~s~~~~~~l~~~a~~~~nI~~~~~D~~~~~~-~~--~~~~~ 213 (305)
...++++++||-+|+|+ |..+..+|+..+ .+|+++|.++...+. +++..--..+..+..+... .. .....
T Consensus 184 ~~~~~~g~~VlV~G~G~vG~~a~qla~~~G--a~Vi~~~~~~~~~~~----~~~lGa~~vi~~~~~~~~~~v~~~~~g~g 257 (363)
T 3uog_A 184 KGHLRAGDRVVVQGTGGVALFGLQIAKATG--AEVIVTSSSREKLDR----AFALGADHGINRLEEDWVERVYALTGDRG 257 (363)
T ss_dssp TTCCCTTCEEEEESSBHHHHHHHHHHHHTT--CEEEEEESCHHHHHH----HHHHTCSEEEETTTSCHHHHHHHHHTTCC
T ss_pred hcCCCCCCEEEEECCCHHHHHHHHHHHHcC--CEEEEEecCchhHHH----HHHcCCCEEEcCCcccHHHHHHHHhCCCC
Confidence 34678999999999765 667777887764 489999999844333 3322111222222111111 00 11237
Q ss_pred EeEEEEeCCChhHHHHHHHHHhccCCCCcEEEEEE
Q 021911 214 VDVIFSDVAQPDQARILALNASYFLKAGGHFVISI 248 (305)
Q Consensus 214 fD~V~~d~~~~~~~~~l~~~a~~~LkpGG~lv~s~ 248 (305)
+|+||-...... +. .+.+.|+++|++++.-
T Consensus 258 ~D~vid~~g~~~----~~-~~~~~l~~~G~iv~~G 287 (363)
T 3uog_A 258 ADHILEIAGGAG----LG-QSLKAVAPDGRISVIG 287 (363)
T ss_dssp EEEEEEETTSSC----HH-HHHHHEEEEEEEEEEC
T ss_pred ceEEEECCChHH----HH-HHHHHhhcCCEEEEEe
Confidence 999997776332 33 5667999999998863
|
| >3fpc_A NADP-dependent alcohol dehydrogenase; oxydoreductase, bacterial alcohol dehydrogenase, domain exchange, chimera, metal-binding; 1.40A {Thermoanaerobacter brockii} PDB: 2nvb_A* 1ykf_A* 1bxz_A* 3ftn_A 3fsr_A 1y9a_A* 2oui_A* 3fpl_A* 1jqb_A 1kev_A* 1ped_A 2b83_A | Back alignment and structure |
|---|
Probab=94.33 E-value=0.034 Score=50.69 Aligned_cols=102 Identities=18% Similarity=0.101 Sum_probs=60.7
Q ss_pred cccCCCCCCEEEEEecCC-CccHHHHHhhhCCCcEEEEEeCChHHHHHHHHHHHcCCCeEEEEccCCCCcc---cccCCC
Q 021911 137 DNIWIKPGARVLYLGAAS-GTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKRTNVIPIIEDARHPAK---YRMLVG 212 (305)
Q Consensus 137 ~~~~~~~g~~VLDlG~G~-G~~t~~la~~~~~~~~V~avD~s~~~~~~l~~~a~~~~nI~~~~~D~~~~~~---~~~~~~ 212 (305)
+...++++++||-+|+|+ |..+..+|+..+ ..+|+++|.++... +.+++..--.++..+-.+... ......
T Consensus 160 ~~~~~~~g~~VlV~GaG~vG~~a~qla~~~G-a~~Vi~~~~~~~~~----~~~~~lGa~~vi~~~~~~~~~~v~~~t~g~ 234 (352)
T 3fpc_A 160 ELANIKLGDTVCVIGIGPVGLMSVAGANHLG-AGRIFAVGSRKHCC----DIALEYGATDIINYKNGDIVEQILKATDGK 234 (352)
T ss_dssp HHTTCCTTCCEEEECCSHHHHHHHHHHHTTT-CSSEEEECCCHHHH----HHHHHHTCCEEECGGGSCHHHHHHHHTTTC
T ss_pred HhcCCCCCCEEEEECCCHHHHHHHHHHHHcC-CcEEEEECCCHHHH----HHHHHhCCceEEcCCCcCHHHHHHHHcCCC
Confidence 344688999999999764 566777777754 23799999998443 333332111222211111111 001123
Q ss_pred cEeEEEEeCCChhHHHHHHHHHhccCCCCcEEEEE
Q 021911 213 MVDVIFSDVAQPDQARILALNASYFLKAGGHFVIS 247 (305)
Q Consensus 213 ~fD~V~~d~~~~~~~~~l~~~a~~~LkpGG~lv~s 247 (305)
.+|+||-....+... . .+.++|+++|++++.
T Consensus 235 g~D~v~d~~g~~~~~---~-~~~~~l~~~G~~v~~ 265 (352)
T 3fpc_A 235 GVDKVVIAGGDVHTF---A-QAVKMIKPGSDIGNV 265 (352)
T ss_dssp CEEEEEECSSCTTHH---H-HHHHHEEEEEEEEEC
T ss_pred CCCEEEECCCChHHH---H-HHHHHHhcCCEEEEe
Confidence 699999766654432 3 556799999999864
|
| >2hwk_A Helicase NSP2; rossman fold, alpha/beta/alpha, multi-domain, hydrolase; 2.45A {Venezuelan equine encephalitis virus} | Back alignment and structure |
|---|
Probab=94.31 E-value=0.25 Score=43.80 Aligned_cols=90 Identities=22% Similarity=0.132 Sum_probs=51.2
Q ss_pred EccCCCCcccccCCCcEeEEEEeCC----------ChhHHHHHH---HHHhccCCCCcEEEEEEcccccCCCCchhhhHH
Q 021911 198 IEDARHPAKYRMLVGMVDVIFSDVA----------QPDQARILA---LNASYFLKAGGHFVISIKANCIDSTVPAEAVFQ 264 (305)
Q Consensus 198 ~~D~~~~~~~~~~~~~fD~V~~d~~----------~~~~~~~l~---~~a~~~LkpGG~lv~s~~~~~i~~~~~~~~v~~ 264 (305)
..|+..+.. ...+|+|++|++ |.|+.+++. .-|.++|+|||.|++-... ... ....
T Consensus 195 ~lDfg~p~~----~~k~DvV~SDMApn~sGh~yqQC~DHarii~Lal~fA~~vLkPGGtfV~Kvyg----gaD---r~se 263 (320)
T 2hwk_A 195 RLDLGIPGD----VPKYDIIFVNVRTPYKYHHYQQCEDHAIKLSMLTKKACLHLNPGGTCVSIGYG----YAD---RASE 263 (320)
T ss_dssp CGGGCSCTT----SCCEEEEEEECCCCCCSCHHHHHHHHHHHHHHTHHHHGGGEEEEEEEEEEECC----CCS---HHHH
T ss_pred ccccCCccc----cCcCCEEEEcCCCCCCCccccccchHHHHHHHHHHHHHHhcCCCceEEEEEec----CCc---ccHH
Confidence 556665542 267999999998 245454443 2478899999999998731 111 1112
Q ss_pred HHHHHHHHCCCcEeEEeec-CCCCCceEEEEEEEcC
Q 021911 265 SEVKKLQQDQFKPFEQVTL-EPFERDHACVVGGYRM 299 (305)
Q Consensus 265 ~~~~~l~~~Gf~~~e~~~l-~p~~~~~~~vv~~~~~ 299 (305)
..+..|++. |+....+.- ..-+....++++.-.+
T Consensus 264 ~lv~~LaR~-F~~Vr~vKP~ASR~StEvf~La~gf~ 298 (320)
T 2hwk_A 264 SIIGAIARQ-FKFSRVCKPKSSLEETEVLFVFIGYD 298 (320)
T ss_dssp HHHHHHHTT-EEEEEEECCTTCCSTTCEEEEEEEEC
T ss_pred HHHHHHHHh-cceeeeeCCCCccccceEEEEEEeec
Confidence 224445444 776665432 1122455556655433
|
| >2h6e_A ADH-4, D-arabinose 1-dehydrogenase; rossman fold, medium chain alcohol dehydrogenase, oxidoreduc; 1.80A {Sulfolobus solfataricus} | Back alignment and structure |
|---|
Probab=94.08 E-value=0.042 Score=49.90 Aligned_cols=97 Identities=9% Similarity=-0.009 Sum_probs=58.4
Q ss_pred CCCCCCEEEEEecCC-CccHHHHHhhhCCCcEEEEEeCChHHHHHHHHHHHcCCCeEEEEccCCC-C--cccccCCCcEe
Q 021911 140 WIKPGARVLYLGAAS-GTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKRTNVIPIIEDARH-P--AKYRMLVGMVD 215 (305)
Q Consensus 140 ~~~~g~~VLDlG~G~-G~~t~~la~~~~~~~~V~avD~s~~~~~~l~~~a~~~~nI~~~~~D~~~-~--~~~~~~~~~fD 215 (305)
.+ ++++||-+|+|+ |..+..+|+...+..+|+++|.|+...+. +++..--.++ |..+ . .........+|
T Consensus 168 ~~-~g~~VlV~GaG~vG~~aiqlak~~~~Ga~Vi~~~~~~~~~~~----~~~lGa~~vi--~~~~~~~~~~~~~~g~g~D 240 (344)
T 2h6e_A 168 KF-AEPVVIVNGIGGLAVYTIQILKALMKNITIVGISRSKKHRDF----ALELGADYVS--EMKDAESLINKLTDGLGAS 240 (344)
T ss_dssp TC-SSCEEEEECCSHHHHHHHHHHHHHCTTCEEEEECSCHHHHHH----HHHHTCSEEE--CHHHHHHHHHHHHTTCCEE
T ss_pred CC-CCCEEEEECCCHHHHHHHHHHHHhcCCCEEEEEeCCHHHHHH----HHHhCCCEEe--ccccchHHHHHhhcCCCcc
Confidence 56 899999999864 55777788776112579999999854333 3222111112 1111 0 00000123799
Q ss_pred EEEEeCCChhHHHHHHHHHhccCCCCcEEEEE
Q 021911 216 VIFSDVAQPDQARILALNASYFLKAGGHFVIS 247 (305)
Q Consensus 216 ~V~~d~~~~~~~~~l~~~a~~~LkpGG~lv~s 247 (305)
+||-....+. .+. .+.++|+++|++++.
T Consensus 241 ~vid~~g~~~---~~~-~~~~~l~~~G~iv~~ 268 (344)
T 2h6e_A 241 IAIDLVGTEE---TTY-NLGKLLAQEGAIILV 268 (344)
T ss_dssp EEEESSCCHH---HHH-HHHHHEEEEEEEEEC
T ss_pred EEEECCCChH---HHH-HHHHHhhcCCEEEEe
Confidence 9998776542 233 566899999998875
|
| >2aef_A Calcium-gated potassium channel MTHK; rossmann fold, helix-turn-helix, Ca2+ binding, flexible interface; 1.70A {Methanothermobacterthermautotrophicus} PDB: 2aej_A 2aem_A 3rbx_A 2ogu_A 2fy8_A 3kxd_A | Back alignment and structure |
|---|
Probab=93.93 E-value=0.24 Score=42.12 Aligned_cols=97 Identities=7% Similarity=-0.007 Sum_probs=64.1
Q ss_pred CCCEEEEEecCCCccHHHHHhhhCCCcEEEEEeCChHHHHHHHHHHHcCCCeEEEEccCCCCccccc-CCCcEeEEEEeC
Q 021911 143 PGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKRTNVIPIIEDARHPAKYRM-LVGMVDVIFSDV 221 (305)
Q Consensus 143 ~g~~VLDlG~G~G~~t~~la~~~~~~~~V~avD~s~~~~~~l~~~a~~~~nI~~~~~D~~~~~~~~~-~~~~fD~V~~d~ 221 (305)
...+|+=+|+ |..+..+++.+...+.|+++|.++..+ +.+. .++.++..|+++...... ....+|+|++..
T Consensus 8 ~~~~viI~G~--G~~G~~la~~L~~~g~v~vid~~~~~~----~~~~--~~~~~i~gd~~~~~~l~~a~i~~ad~vi~~~ 79 (234)
T 2aef_A 8 KSRHVVICGW--SESTLECLRELRGSEVFVLAEDENVRK----KVLR--SGANFVHGDPTRVSDLEKANVRGARAVIVDL 79 (234)
T ss_dssp --CEEEEESC--CHHHHHHHHHSTTSEEEEEESCGGGHH----HHHH--TTCEEEESCTTCHHHHHHTTCTTCSEEEECC
T ss_pred CCCEEEEECC--ChHHHHHHHHHHhCCeEEEEECCHHHH----HHHh--cCCeEEEcCCCCHHHHHhcCcchhcEEEEcC
Confidence 4567887776 789999998875443488999998443 3333 468899999987654321 246889999877
Q ss_pred CChhHHHHHHHHHhccCCCCcEEEEEE
Q 021911 222 AQPDQARILALNASYFLKAGGHFVISI 248 (305)
Q Consensus 222 ~~~~~~~~l~~~a~~~LkpGG~lv~s~ 248 (305)
+.......+. ...+.+.|.-+++...
T Consensus 80 ~~d~~n~~~~-~~a~~~~~~~~iia~~ 105 (234)
T 2aef_A 80 ESDSETIHCI-LGIRKIDESVRIIAEA 105 (234)
T ss_dssp SCHHHHHHHH-HHHHHHCSSSEEEEEC
T ss_pred CCcHHHHHHH-HHHHHHCCCCeEEEEE
Confidence 6654444444 4555677776666654
|
| >1piw_A Hypothetical zinc-type alcohol dehydrogenase- like protein in PRE5-FET4 intergenic...; ADH topology, NADP(H)dependent, oxidoreductase; HET: NAP; 3.00A {Saccharomyces cerevisiae} SCOP: b.35.1.2 c.2.1.1 PDB: 1ps0_A* 1q1n_A | Back alignment and structure |
|---|
Probab=93.91 E-value=0.045 Score=50.08 Aligned_cols=97 Identities=19% Similarity=0.179 Sum_probs=59.2
Q ss_pred cCCCCCCEEEEEecCC-CccHHHHHhhhCCCcEEEEEeCChHHHHHHHHHHHcCCCeEEEEccCC-CCcccccCCCcEeE
Q 021911 139 IWIKPGARVLYLGAAS-GTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKRTNVIPIIEDAR-HPAKYRMLVGMVDV 216 (305)
Q Consensus 139 ~~~~~g~~VLDlG~G~-G~~t~~la~~~~~~~~V~avD~s~~~~~~l~~~a~~~~nI~~~~~D~~-~~~~~~~~~~~fD~ 216 (305)
..++++++||-+|+|+ |..+..+|+..+ .+|+++|.++...+.+.+ ..--..+..+-. +.... ....+|+
T Consensus 175 ~~~~~g~~VlV~GaG~vG~~~~qlak~~G--a~Vi~~~~~~~~~~~~~~----lGa~~v~~~~~~~~~~~~--~~~~~D~ 246 (360)
T 1piw_A 175 NGCGPGKKVGIVGLGGIGSMGTLISKAMG--AETYVISRSSRKREDAMK----MGADHYIATLEEGDWGEK--YFDTFDL 246 (360)
T ss_dssp TTCSTTCEEEEECCSHHHHHHHHHHHHHT--CEEEEEESSSTTHHHHHH----HTCSEEEEGGGTSCHHHH--SCSCEEE
T ss_pred cCCCCCCEEEEECCCHHHHHHHHHHHHCC--CEEEEEcCCHHHHHHHHH----cCCCEEEcCcCchHHHHH--hhcCCCE
Confidence 4678999999999853 556777777765 479999998754333322 111112221111 11111 1257999
Q ss_pred EEEeCCC--hhHHHHHHHHHhccCCCCcEEEEE
Q 021911 217 IFSDVAQ--PDQARILALNASYFLKAGGHFVIS 247 (305)
Q Consensus 217 V~~d~~~--~~~~~~l~~~a~~~LkpGG~lv~s 247 (305)
||-.... +.. +. .+.++|+++|+++..
T Consensus 247 vid~~g~~~~~~---~~-~~~~~l~~~G~iv~~ 275 (360)
T 1piw_A 247 IVVCASSLTDID---FN-IMPKAMKVGGRIVSI 275 (360)
T ss_dssp EEECCSCSTTCC---TT-TGGGGEEEEEEEEEC
T ss_pred EEECCCCCcHHH---HH-HHHHHhcCCCEEEEe
Confidence 9977665 322 23 566899999998874
|
| >3abi_A Putative uncharacterized protein PH1688; L-lysine dehydrogenase, oxidoreductase; HET: NAD; 2.44A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=93.84 E-value=0.15 Score=46.68 Aligned_cols=78 Identities=17% Similarity=0.149 Sum_probs=55.7
Q ss_pred CCEEEEEecCCCccHHHHHhhhCCCcEEEEEeCChHHHHHHHHHHHcCCCeEEEEccCCCCcccccCCCcEeEEEEeCCC
Q 021911 144 GARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKRTNVIPIIEDARHPAKYRMLVGMVDVIFSDVAQ 223 (305)
Q Consensus 144 g~~VLDlG~G~G~~t~~la~~~~~~~~V~avD~s~~~~~~l~~~a~~~~nI~~~~~D~~~~~~~~~~~~~fD~V~~d~~~ 223 (305)
.++||=+|| |.....+++.+.....|+.+|.+.+. ++.++ +.+..+..|+.+......+...+|+|++..|.
T Consensus 16 ~mkilvlGa--G~vG~~~~~~L~~~~~v~~~~~~~~~----~~~~~--~~~~~~~~d~~d~~~l~~~~~~~DvVi~~~p~ 87 (365)
T 3abi_A 16 HMKVLILGA--GNIGRAIAWDLKDEFDVYIGDVNNEN----LEKVK--EFATPLKVDASNFDKLVEVMKEFELVIGALPG 87 (365)
T ss_dssp CCEEEEECC--SHHHHHHHHHHTTTSEEEEEESCHHH----HHHHT--TTSEEEECCTTCHHHHHHHHTTCSEEEECCCG
T ss_pred ccEEEEECC--CHHHHHHHHHHhcCCCeEEEEcCHHH----HHHHh--ccCCcEEEecCCHHHHHHHHhCCCEEEEecCC
Confidence 478999998 78888888877667789999999843 33333 45777888988776544344688999987764
Q ss_pred hhHHHH
Q 021911 224 PDQARI 229 (305)
Q Consensus 224 ~~~~~~ 229 (305)
.....+
T Consensus 88 ~~~~~v 93 (365)
T 3abi_A 88 FLGFKS 93 (365)
T ss_dssp GGHHHH
T ss_pred cccchH
Confidence 433333
|
| >1rjw_A ADH-HT, alcohol dehydrogenase; oxidoreductase, NAD, zinc, tetramer; 2.35A {Geobacillus stearothermophilus} SCOP: b.35.1.2 c.2.1.1 PDB: 3pii_A | Back alignment and structure |
|---|
Probab=93.78 E-value=0.13 Score=46.62 Aligned_cols=98 Identities=19% Similarity=0.203 Sum_probs=59.8
Q ss_pred ccCCCCCCEEEEEecCC-CccHHHHHhhhCCCcEEEEEeCChHHHHHHHHHHHcCCCeEEEEccCCCCccc---ccCCCc
Q 021911 138 NIWIKPGARVLYLGAAS-GTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKRTNVIPIIEDARHPAKY---RMLVGM 213 (305)
Q Consensus 138 ~~~~~~g~~VLDlG~G~-G~~t~~la~~~~~~~~V~avD~s~~~~~~l~~~a~~~~nI~~~~~D~~~~~~~---~~~~~~ 213 (305)
...++++++||-+|+|. |..+..+|...+ .+|+++|.++... +.+++.. ... ..|..+.... ......
T Consensus 159 ~~~~~~g~~VlV~GaG~vG~~~~~~a~~~G--a~Vi~~~~~~~~~----~~~~~lG-a~~-~~d~~~~~~~~~~~~~~~~ 230 (339)
T 1rjw_A 159 VTGAKPGEWVAIYGIGGLGHVAVQYAKAMG--LNVVAVDIGDEKL----ELAKELG-ADL-VVNPLKEDAAKFMKEKVGG 230 (339)
T ss_dssp HHTCCTTCEEEEECCSTTHHHHHHHHHHTT--CEEEEECSCHHHH----HHHHHTT-CSE-EECTTTSCHHHHHHHHHSS
T ss_pred hcCCCCCCEEEEECCCHHHHHHHHHHHHcC--CEEEEEeCCHHHH----HHHHHCC-CCE-EecCCCccHHHHHHHHhCC
Confidence 34678899999999853 556666666654 4899999998443 3333321 111 1243322110 000147
Q ss_pred EeEEEEeCCChhHHHHHHHHHhccCCCCcEEEEE
Q 021911 214 VDVIFSDVAQPDQARILALNASYFLKAGGHFVIS 247 (305)
Q Consensus 214 fD~V~~d~~~~~~~~~l~~~a~~~LkpGG~lv~s 247 (305)
+|+||.....+. .+. .+.++|+++|++++.
T Consensus 231 ~d~vid~~g~~~---~~~-~~~~~l~~~G~~v~~ 260 (339)
T 1rjw_A 231 VHAAVVTAVSKP---AFQ-SAYNSIRRGGACVLV 260 (339)
T ss_dssp EEEEEESSCCHH---HHH-HHHHHEEEEEEEEEC
T ss_pred CCEEEECCCCHH---HHH-HHHHHhhcCCEEEEe
Confidence 999998776543 233 566899999998874
|
| >3uko_A Alcohol dehydrogenase class-3; alcohol dehydrogenase III, homodimer, reduction of GSNO, NAD binding, oxidoreductase; HET: NAD SO4; 1.40A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=93.73 E-value=0.19 Score=46.11 Aligned_cols=101 Identities=19% Similarity=0.237 Sum_probs=61.7
Q ss_pred ccCCCCCCEEEEEecCC-CccHHHHHhhhCCCcEEEEEeCChHHHHHHHHHHHcCCCeEEEEcc--CCCCcc-c-ccCCC
Q 021911 138 NIWIKPGARVLYLGAAS-GTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKRTNVIPIIED--ARHPAK-Y-RMLVG 212 (305)
Q Consensus 138 ~~~~~~g~~VLDlG~G~-G~~t~~la~~~~~~~~V~avD~s~~~~~~l~~~a~~~~nI~~~~~D--~~~~~~-~-~~~~~ 212 (305)
...++++++||-+|+|+ |..+..+|+..+ ..+|+++|.++.. ++.+++..--..+..+ -.+... . .....
T Consensus 188 ~~~~~~g~~VlV~GaG~vG~~a~q~a~~~G-a~~Vi~~~~~~~~----~~~a~~lGa~~vi~~~~~~~~~~~~i~~~~~g 262 (378)
T 3uko_A 188 TAKVEPGSNVAIFGLGTVGLAVAEGAKTAG-ASRIIGIDIDSKK----YETAKKFGVNEFVNPKDHDKPIQEVIVDLTDG 262 (378)
T ss_dssp TTCCCTTCCEEEECCSHHHHHHHHHHHHHT-CSCEEEECSCTTH----HHHHHTTTCCEEECGGGCSSCHHHHHHHHTTS
T ss_pred hcCCCCCCEEEEECCCHHHHHHHHHHHHcC-CCeEEEEcCCHHH----HHHHHHcCCcEEEccccCchhHHHHHHHhcCC
Confidence 34678899999999863 667777787764 2379999999843 4445443211222111 111110 0 01123
Q ss_pred cEeEEEEeCCChhHHHHHHHHHhccCCCC-cEEEEE
Q 021911 213 MVDVIFSDVAQPDQARILALNASYFLKAG-GHFVIS 247 (305)
Q Consensus 213 ~fD~V~~d~~~~~~~~~l~~~a~~~LkpG-G~lv~s 247 (305)
.+|+||-....+.. +. .+.++|+++ |++++.
T Consensus 263 g~D~vid~~g~~~~---~~-~~~~~l~~g~G~iv~~ 294 (378)
T 3uko_A 263 GVDYSFECIGNVSV---MR-AALECCHKGWGTSVIV 294 (378)
T ss_dssp CBSEEEECSCCHHH---HH-HHHHTBCTTTCEEEEC
T ss_pred CCCEEEECCCCHHH---HH-HHHHHhhccCCEEEEE
Confidence 79999977765433 33 666899996 998875
|
| >1pqw_A Polyketide synthase; rossmann fold, dimer, structural genomics, PSI, protein STRU initiative; 2.66A {Mycobacterium tuberculosis} SCOP: c.2.1.1 | Back alignment and structure |
|---|
Probab=93.72 E-value=0.13 Score=42.52 Aligned_cols=96 Identities=23% Similarity=0.303 Sum_probs=57.8
Q ss_pred CCCCCCEEEEEecC--CCccHHHHHhhhCCCcEEEEEeCChHHHHHHHHHHHcCCCeEEEEccCCCCccc----c-cCCC
Q 021911 140 WIKPGARVLYLGAA--SGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKRTNVIPIIEDARHPAKY----R-MLVG 212 (305)
Q Consensus 140 ~~~~g~~VLDlG~G--~G~~t~~la~~~~~~~~V~avD~s~~~~~~l~~~a~~~~nI~~~~~D~~~~~~~----~-~~~~ 212 (305)
.++++++||..|++ .|..+..++...+ .+|+++|.++.. ++.+++.. ... ..|..+.... . ....
T Consensus 35 ~~~~g~~vlV~Ga~ggiG~~~~~~~~~~G--~~V~~~~~~~~~----~~~~~~~g-~~~-~~d~~~~~~~~~~~~~~~~~ 106 (198)
T 1pqw_A 35 RLSPGERVLIHSATGGVGMAAVSIAKMIG--ARIYTTAGSDAK----REMLSRLG-VEY-VGDSRSVDFADEILELTDGY 106 (198)
T ss_dssp CCCTTCEEEETTTTSHHHHHHHHHHHHHT--CEEEEEESSHHH----HHHHHTTC-CSE-EEETTCSTHHHHHHHHTTTC
T ss_pred CCCCCCEEEEeeCCChHHHHHHHHHHHcC--CEEEEEeCCHHH----HHHHHHcC-CCE-EeeCCcHHHHHHHHHHhCCC
Confidence 67889999999853 3445555555544 589999999843 33343321 111 1243332110 0 0123
Q ss_pred cEeEEEEeCCChhHHHHHHHHHhccCCCCcEEEEEE
Q 021911 213 MVDVIFSDVAQPDQARILALNASYFLKAGGHFVISI 248 (305)
Q Consensus 213 ~fD~V~~d~~~~~~~~~l~~~a~~~LkpGG~lv~s~ 248 (305)
.+|+|+.+... ..+. .+.+.|+++|++++.-
T Consensus 107 ~~D~vi~~~g~----~~~~-~~~~~l~~~G~~v~~g 137 (198)
T 1pqw_A 107 GVDVVLNSLAG----EAIQ-RGVQILAPGGRFIELG 137 (198)
T ss_dssp CEEEEEECCCT----HHHH-HHHHTEEEEEEEEECS
T ss_pred CCeEEEECCch----HHHH-HHHHHhccCCEEEEEc
Confidence 69999977653 2344 6778999999998753
|
| >1eg2_A Modification methylase RSRI; rossmann fold, exocyclic amino DNA methyltransferase RSRI, D binding, DNA modification, DNA methylation; HET: MTA; 1.75A {Rhodobacter sphaeroides} SCOP: c.66.1.11 PDB: 1nw5_A* 1nw6_A* 1nw7_A* 1nw8_A | Back alignment and structure |
|---|
Probab=93.53 E-value=0.1 Score=47.17 Aligned_cols=53 Identities=21% Similarity=0.091 Sum_probs=38.1
Q ss_pred eEEE-EccCCCCcccccCCCcEeEEEEeCCCh--------------hHHHHHHHHHhccCCCCcEEEEEE
Q 021911 194 VIPI-IEDARHPAKYRMLVGMVDVIFSDVAQP--------------DQARILALNASYFLKAGGHFVISI 248 (305)
Q Consensus 194 I~~~-~~D~~~~~~~~~~~~~fD~V~~d~~~~--------------~~~~~l~~~a~~~LkpGG~lv~s~ 248 (305)
..++ +.|+...... +...+||+|++|+|.. .....+. .+.++|+|+|.+++.+
T Consensus 39 ~~l~i~gD~l~~L~~-l~~~svDlI~tDPPY~~~~d~~~~~~~~~~~~~~~l~-~~~rvLk~~G~i~i~~ 106 (319)
T 1eg2_A 39 RHVYDVCDCLDTLAK-LPDDSVQLIICDPPYNIMLADWDDHMDYIGWAKRWLA-EAERVLSPTGSIAIFG 106 (319)
T ss_dssp EEEEEECCHHHHHHT-SCTTCEEEEEECCCSBCCGGGGGTCSSHHHHHHHHHH-HHHHHEEEEEEEEEEE
T ss_pred ceEEECCcHHHHHHh-CccCCcCEEEECCCCCCCCCCccCHHHHHHHHHHHHH-HHHHHcCCCeEEEEEc
Confidence 4566 8898654332 2346899999999932 2344555 7889999999999987
|
| >4eez_A Alcohol dehydrogenase 1; site-saturation mutagenesis, directed evolution, isobutyraldehyde, biofuel, oxidoreductase; HET: PG4; 1.90A {Lactococcus lactis subsp} PDB: 4eex_A* | Back alignment and structure |
|---|
Probab=93.50 E-value=0.1 Score=47.22 Aligned_cols=102 Identities=21% Similarity=0.118 Sum_probs=60.1
Q ss_pred cccCCCCCCEEEEEecCCC-ccHHHHHhhhCCCcEEEEEeCChHHHHHHHHHHHcCCCeEEEEccCCCCcc---cccCCC
Q 021911 137 DNIWIKPGARVLYLGAASG-TTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKRTNVIPIIEDARHPAK---YRMLVG 212 (305)
Q Consensus 137 ~~~~~~~g~~VLDlG~G~G-~~t~~la~~~~~~~~V~avD~s~~~~~~l~~~a~~~~nI~~~~~D~~~~~~---~~~~~~ 212 (305)
....++++++||-+|+|+. ..+..++.... ..+|+++|.++.. ++.+++..--..+...-.++.. ......
T Consensus 157 ~~~~~~~g~~VlV~GaG~~g~~a~~~a~~~~-g~~Vi~~~~~~~r----~~~~~~~Ga~~~i~~~~~~~~~~v~~~t~g~ 231 (348)
T 4eez_A 157 KVSGVKPGDWQVIFGAGGLGNLAIQYAKNVF-GAKVIAVDINQDK----LNLAKKIGADVTINSGDVNPVDEIKKITGGL 231 (348)
T ss_dssp HHHTCCTTCEEEEECCSHHHHHHHHHHHHTS-CCEEEEEESCHHH----HHHHHHTTCSEEEEC-CCCHHHHHHHHTTSS
T ss_pred cccCCCCCCEEEEEcCCCccHHHHHHHHHhC-CCEEEEEECcHHH----hhhhhhcCCeEEEeCCCCCHHHHhhhhcCCC
Confidence 3346789999999998764 34455555443 4689999999843 3444443212222211111110 001123
Q ss_pred cEeEEEEeCCChhHHHHHHHHHhccCCCCcEEEEE
Q 021911 213 MVDVIFSDVAQPDQARILALNASYFLKAGGHFVIS 247 (305)
Q Consensus 213 ~fD~V~~d~~~~~~~~~l~~~a~~~LkpGG~lv~s 247 (305)
.+|+++.+...+.. +. .+.+.|+++|++++.
T Consensus 232 g~d~~~~~~~~~~~---~~-~~~~~l~~~G~~v~~ 262 (348)
T 4eez_A 232 GVQSAIVCAVARIA---FE-QAVASLKPMGKMVAV 262 (348)
T ss_dssp CEEEEEECCSCHHH---HH-HHHHTEEEEEEEEEC
T ss_pred CceEEEEeccCcch---hh-eeheeecCCceEEEE
Confidence 68888877766543 33 566899999998875
|
| >2hcy_A Alcohol dehydrogenase 1; tetramer of asymmetric dimers, zinc coordination, intramolec disulfide bonds, oxidoreductase; HET: 8ID; 2.44A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=93.45 E-value=0.097 Score=47.48 Aligned_cols=100 Identities=12% Similarity=0.119 Sum_probs=61.0
Q ss_pred ccccCCCCCCEEEEEec--CCCccHHHHHhhhCCCcEEEEEeCChHHHHHHHHHHHcCCCeEEEEccCCCCccc----c-
Q 021911 136 VDNIWIKPGARVLYLGA--ASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKRTNVIPIIEDARHPAKY----R- 208 (305)
Q Consensus 136 l~~~~~~~g~~VLDlG~--G~G~~t~~la~~~~~~~~V~avD~s~~~~~~l~~~a~~~~nI~~~~~D~~~~~~~----~- 208 (305)
|....++++++||-+|+ +.|..+..++...+ .+|+++|.++... +.+++.. ... ..|..+.... .
T Consensus 162 l~~~~~~~g~~vlV~Ga~ggiG~~~~~~a~~~G--a~V~~~~~~~~~~----~~~~~~g-~~~-~~d~~~~~~~~~~~~~ 233 (347)
T 2hcy_A 162 LKSANLMAGHWVAISGAAGGLGSLAVQYAKAMG--YRVLGIDGGEGKE----ELFRSIG-GEV-FIDFTKEKDIVGAVLK 233 (347)
T ss_dssp HHTTTCCTTCEEEEETTTSHHHHHHHHHHHHTT--CEEEEEECSTTHH----HHHHHTT-CCE-EEETTTCSCHHHHHHH
T ss_pred HHhcCCCCCCEEEEECCCchHHHHHHHHHHHCC--CcEEEEcCCHHHH----HHHHHcC-Cce-EEecCccHhHHHHHHH
Confidence 33346788999999998 34556666666643 4899999887443 2333321 111 1244321110 0
Q ss_pred cCCCcEeEEEEeCCChhHHHHHHHHHhccCCCCcEEEEE
Q 021911 209 MLVGMVDVIFSDVAQPDQARILALNASYFLKAGGHFVIS 247 (305)
Q Consensus 209 ~~~~~fD~V~~d~~~~~~~~~l~~~a~~~LkpGG~lv~s 247 (305)
.....+|+|+.+...+. .+. .+.+.|+++|++++.
T Consensus 234 ~~~~~~D~vi~~~g~~~---~~~-~~~~~l~~~G~iv~~ 268 (347)
T 2hcy_A 234 ATDGGAHGVINVSVSEA---AIE-ASTRYVRANGTTVLV 268 (347)
T ss_dssp HHTSCEEEEEECSSCHH---HHH-HHTTSEEEEEEEEEC
T ss_pred HhCCCCCEEEECCCcHH---HHH-HHHHHHhcCCEEEEE
Confidence 01126999998877543 334 677899999998875
|
| >1boo_A Protein (N-4 cytosine-specific methyltransferase PVU II); type II DNA-(cytosine N4) methyltransferase, amino methylation, selenomethionine; HET: SAH; 2.80A {Proteus vulgaris} SCOP: c.66.1.11 | Back alignment and structure |
|---|
Probab=93.45 E-value=0.083 Score=47.80 Aligned_cols=57 Identities=19% Similarity=0.127 Sum_probs=40.8
Q ss_pred hhhHHHHHHHccccccCCCCCCEEEEEecCCCccHHHHHhhhCCCcEEEEEeCChHHHHHHHHHHHcC
Q 021911 124 FRSKLAAAVLGGVDNIWIKPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKR 191 (305)
Q Consensus 124 ~~s~l~a~ll~~l~~~~~~~g~~VLDlG~G~G~~t~~la~~~~~~~~V~avD~s~~~~~~l~~~a~~~ 191 (305)
....|+..++.. ...+++.|||..||+|+++..+... + .+.+++|+++ ...+.++++
T Consensus 237 kp~~l~~~~i~~----~~~~~~~VlDpF~GsGtt~~aa~~~-g--r~~ig~e~~~----~~~~~~~~r 293 (323)
T 1boo_A 237 FPAKLPEFFIRM----LTEPDDLVVDIFGGSNTTGLVAERE-S--RKWISFEMKP----EYVAASAFR 293 (323)
T ss_dssp CCTHHHHHHHHH----HCCTTCEEEETTCTTCHHHHHHHHT-T--CEEEEEESCH----HHHHHHHGG
T ss_pred CCHHHHHHHHHH----hCCCCCEEEECCCCCCHHHHHHHHc-C--CCEEEEeCCH----HHHHHHHHH
Confidence 344566666532 3578999999999999877665554 3 4899999999 555555554
|
| >3ip1_A Alcohol dehydrogenase, zinc-containing; structural genomics, metal-binding, oxidoreductase, PSI-2, protein structure initiative; 2.09A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=93.42 E-value=0.16 Score=47.10 Aligned_cols=103 Identities=17% Similarity=0.064 Sum_probs=58.6
Q ss_pred CCCCCCEEEEEecCC-CccHHHHHhhhCCCcEEEEEeCChHHHHHHHHHHHcCCCeEEEEccCCCCcc-cc--cCCCcEe
Q 021911 140 WIKPGARVLYLGAAS-GTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKRTNVIPIIEDARHPAK-YR--MLVGMVD 215 (305)
Q Consensus 140 ~~~~g~~VLDlG~G~-G~~t~~la~~~~~~~~V~avD~s~~~~~~l~~~a~~~~nI~~~~~D~~~~~~-~~--~~~~~fD 215 (305)
.++++++||-+|+|+ |..+..+|+..+ ..+|+++|.++... +.+++..--..+..+-.+... .. .....+|
T Consensus 210 ~~~~g~~VlV~GaG~vG~~aiqlak~~G-a~~Vi~~~~~~~~~----~~~~~lGa~~vi~~~~~~~~~~i~~~t~g~g~D 284 (404)
T 3ip1_A 210 GIRPGDNVVILGGGPIGLAAVAILKHAG-ASKVILSEPSEVRR----NLAKELGADHVIDPTKENFVEAVLDYTNGLGAK 284 (404)
T ss_dssp CCCTTCEEEEECCSHHHHHHHHHHHHTT-CSEEEEECSCHHHH----HHHHHHTCSEEECTTTSCHHHHHHHHTTTCCCS
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHcC-CCEEEEECCCHHHH----HHHHHcCCCEEEcCCCCCHHHHHHHHhCCCCCC
Confidence 578899999999853 556677777754 23899999998443 333332111222111111110 00 0123699
Q ss_pred EEEEeCCChh-HHHHHHHHHhccCCCCcEEEEE
Q 021911 216 VIFSDVAQPD-QARILALNASYFLKAGGHFVIS 247 (305)
Q Consensus 216 ~V~~d~~~~~-~~~~l~~~a~~~LkpGG~lv~s 247 (305)
+||-....+. ....+...+.+.++++|++++.
T Consensus 285 ~vid~~g~~~~~~~~~~~~l~~~~~~~G~iv~~ 317 (404)
T 3ip1_A 285 LFLEATGVPQLVWPQIEEVIWRARGINATVAIV 317 (404)
T ss_dssp EEEECSSCHHHHHHHHHHHHHHCSCCCCEEEEC
T ss_pred EEEECCCCcHHHHHHHHHHHHhccCCCcEEEEe
Confidence 9997777662 2222321333566999999885
|
| >1p0f_A NADP-dependent alcohol dehydrogenase; ADH topology, NADP(H)-dependent, oxidoreductase; HET: NAP; 1.80A {Rana perezi} SCOP: b.35.1.2 c.2.1.1 PDB: 1p0c_A* | Back alignment and structure |
|---|
Probab=93.31 E-value=0.17 Score=46.28 Aligned_cols=100 Identities=15% Similarity=0.083 Sum_probs=59.9
Q ss_pred cCCCCCCEEEEEecCC-CccHHHHHhhhCCCcEEEEEeCChHHHHHHHHHHHcCCCeEEEEccC--CCCcc-c-ccCCCc
Q 021911 139 IWIKPGARVLYLGAAS-GTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKRTNVIPIIEDA--RHPAK-Y-RMLVGM 213 (305)
Q Consensus 139 ~~~~~g~~VLDlG~G~-G~~t~~la~~~~~~~~V~avD~s~~~~~~l~~~a~~~~nI~~~~~D~--~~~~~-~-~~~~~~ 213 (305)
..++++++||-+|+|+ |..+..+|+..+ ..+|+++|.++... +.+++..--..+..+- .+... . ......
T Consensus 187 ~~~~~g~~VlV~GaG~vG~~aiqlak~~G-a~~Vi~~~~~~~~~----~~a~~lGa~~vi~~~~~~~~~~~~i~~~t~gg 261 (373)
T 1p0f_A 187 AKVTPGSTCAVFGLGGVGFSAIVGCKAAG-ASRIIGVGTHKDKF----PKAIELGATECLNPKDYDKPIYEVICEKTNGG 261 (373)
T ss_dssp TCCCTTCEEEEECCSHHHHHHHHHHHHHT-CSEEEEECSCGGGH----HHHHHTTCSEEECGGGCSSCHHHHHHHHTTSC
T ss_pred cCCCCCCEEEEECCCHHHHHHHHHHHHcC-CCeEEEECCCHHHH----HHHHHcCCcEEEecccccchHHHHHHHHhCCC
Confidence 3678899999999764 556777777764 23799999998443 3333321112221110 11111 0 011237
Q ss_pred EeEEEEeCCChhHHHHHHHHHhccCCCC-cEEEEE
Q 021911 214 VDVIFSDVAQPDQARILALNASYFLKAG-GHFVIS 247 (305)
Q Consensus 214 fD~V~~d~~~~~~~~~l~~~a~~~LkpG-G~lv~s 247 (305)
+|+||-....+. .+. .+.++|+++ |++++.
T Consensus 262 ~Dvvid~~g~~~---~~~-~~~~~l~~~~G~iv~~ 292 (373)
T 1p0f_A 262 VDYAVECAGRIE---TMM-NALQSTYCGSGVTVVL 292 (373)
T ss_dssp BSEEEECSCCHH---HHH-HHHHTBCTTTCEEEEC
T ss_pred CCEEEECCCCHH---HHH-HHHHHHhcCCCEEEEE
Confidence 999997666543 233 666899999 998874
|
| >3gms_A Putative NADPH:quinone reductase; structural genomics, putative quinone oxidoreductase, unknown function, PSI-2; 1.76A {Bacillus thuringiensis} | Back alignment and structure |
|---|
Probab=93.22 E-value=0.14 Score=46.35 Aligned_cols=101 Identities=15% Similarity=0.166 Sum_probs=61.1
Q ss_pred cccCCCCCCEEEEEecC--CCccHHHHHhhhCCCcEEEEEeCChHHHHHHHHHHHcCCCeEEEEccCCCCcc-c--ccCC
Q 021911 137 DNIWIKPGARVLYLGAA--SGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKRTNVIPIIEDARHPAK-Y--RMLV 211 (305)
Q Consensus 137 ~~~~~~~g~~VLDlG~G--~G~~t~~la~~~~~~~~V~avD~s~~~~~~l~~~a~~~~nI~~~~~D~~~~~~-~--~~~~ 211 (305)
+...++++++||-+||+ .|..+..+|...+ .+|+++|.++...+.+.+ ...-..+..+-.+... . ....
T Consensus 138 ~~~~~~~g~~VlV~Ga~g~iG~~~~~~a~~~G--a~Vi~~~~~~~~~~~~~~----lga~~~~~~~~~~~~~~~~~~~~~ 211 (340)
T 3gms_A 138 ETLNLQRNDVLLVNACGSAIGHLFAQLSQILN--FRLIAVTRNNKHTEELLR----LGAAYVIDTSTAPLYETVMELTNG 211 (340)
T ss_dssp TTSCCCTTCEEEESSTTSHHHHHHHHHHHHHT--CEEEEEESSSTTHHHHHH----HTCSEEEETTTSCHHHHHHHHTTT
T ss_pred HhcccCCCCEEEEeCCccHHHHHHHHHHHHcC--CEEEEEeCCHHHHHHHHh----CCCcEEEeCCcccHHHHHHHHhCC
Confidence 33468899999999987 5667888888765 489999998854333332 2111122111111111 0 0112
Q ss_pred CcEeEEEEeCCChhHHHHHHHHHhccCCCCcEEEEEE
Q 021911 212 GMVDVIFSDVAQPDQARILALNASYFLKAGGHFVISI 248 (305)
Q Consensus 212 ~~fD~V~~d~~~~~~~~~l~~~a~~~LkpGG~lv~s~ 248 (305)
..+|+||.....+... .+.++|+++|++++.-
T Consensus 212 ~g~Dvvid~~g~~~~~-----~~~~~l~~~G~iv~~G 243 (340)
T 3gms_A 212 IGADAAIDSIGGPDGN-----ELAFSLRPNGHFLTIG 243 (340)
T ss_dssp SCEEEEEESSCHHHHH-----HHHHTEEEEEEEEECC
T ss_pred CCCcEEEECCCChhHH-----HHHHHhcCCCEEEEEe
Confidence 3799999766644322 3347999999998863
|
| >1cdo_A Alcohol dehydrogenase; oxidoreductase, oxidoreductase (CH-OH(D)-NAD(A)); HET: NAD; 2.05A {Gadus callarias} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=93.03 E-value=0.23 Score=45.49 Aligned_cols=98 Identities=19% Similarity=0.182 Sum_probs=59.5
Q ss_pred cCCCCCCEEEEEecCC-CccHHHHHhhhCCCcEEEEEeCChHHHHHHHHHHHcCCCeEEEEccCCC----Ccc-c-ccCC
Q 021911 139 IWIKPGARVLYLGAAS-GTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKRTNVIPIIEDARH----PAK-Y-RMLV 211 (305)
Q Consensus 139 ~~~~~g~~VLDlG~G~-G~~t~~la~~~~~~~~V~avD~s~~~~~~l~~~a~~~~nI~~~~~D~~~----~~~-~-~~~~ 211 (305)
..++++++||-+|+|+ |..+..+|+..+ ..+|+++|.++... +.+++..--..+ |..+ ... . ....
T Consensus 188 ~~~~~g~~VlV~GaG~vG~~a~qla~~~G-a~~Vi~~~~~~~~~----~~~~~lGa~~vi--~~~~~~~~~~~~~~~~~~ 260 (374)
T 1cdo_A 188 AKVEPGSTCAVFGLGAVGLAAVMGCHSAG-AKRIIAVDLNPDKF----EKAKVFGATDFV--NPNDHSEPISQVLSKMTN 260 (374)
T ss_dssp TCCCTTCEEEEECCSHHHHHHHHHHHHTT-CSEEEEECSCGGGH----HHHHHTTCCEEE--CGGGCSSCHHHHHHHHHT
T ss_pred cCCCCCCEEEEECCCHHHHHHHHHHHHcC-CCEEEEEcCCHHHH----HHHHHhCCceEE--eccccchhHHHHHHHHhC
Confidence 3678899999999754 556777777754 22799999998443 333332111122 2221 111 0 0112
Q ss_pred CcEeEEEEeCCChhHHHHHHHHHhccCCCC-cEEEEE
Q 021911 212 GMVDVIFSDVAQPDQARILALNASYFLKAG-GHFVIS 247 (305)
Q Consensus 212 ~~fD~V~~d~~~~~~~~~l~~~a~~~LkpG-G~lv~s 247 (305)
..+|+||-....+.. +. .+.++|+++ |++++.
T Consensus 261 ~g~D~vid~~g~~~~---~~-~~~~~l~~~~G~iv~~ 293 (374)
T 1cdo_A 261 GGVDFSLECVGNVGV---MR-NALESCLKGWGVSVLV 293 (374)
T ss_dssp SCBSEEEECSCCHHH---HH-HHHHTBCTTTCEEEEC
T ss_pred CCCCEEEECCCCHHH---HH-HHHHHhhcCCcEEEEE
Confidence 379999977665432 33 666899999 998875
|
| >2jhf_A Alcohol dehydrogenase E chain; oxidoreductase, metal coordination, NAD, zinc, inhibition, acetylation, metal-binding; HET: NAD; 1.0A {Equus caballus} SCOP: b.35.1.2 c.2.1.1 PDB: 1adc_A* 1adf_A* 1adg_A* 1adb_A* 1bto_A* 1heu_A* 1hf3_A* 1hld_A* 1lde_A* 1ldy_A* 1mg0_A* 1n92_A* 1p1r_A* 1ye3_A 1het_A* 2jhg_A* 2ohx_A* 2oxi_A* 3bto_A* 4dwv_A* ... | Back alignment and structure |
|---|
Probab=92.94 E-value=0.2 Score=45.90 Aligned_cols=98 Identities=18% Similarity=0.206 Sum_probs=59.3
Q ss_pred cCCCCCCEEEEEecCC-CccHHHHHhhhCCCcEEEEEeCChHHHHHHHHHHHcCCCeEEEEccCCC----Ccc-c-ccCC
Q 021911 139 IWIKPGARVLYLGAAS-GTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKRTNVIPIIEDARH----PAK-Y-RMLV 211 (305)
Q Consensus 139 ~~~~~g~~VLDlG~G~-G~~t~~la~~~~~~~~V~avD~s~~~~~~l~~~a~~~~nI~~~~~D~~~----~~~-~-~~~~ 211 (305)
..++++++||-+|+|. |..+..+|+..+ ..+|+++|.++... +.+++..--..+ |..+ ... . ....
T Consensus 187 ~~~~~g~~VlV~GaG~vG~~a~qla~~~G-a~~Vi~~~~~~~~~----~~~~~lGa~~vi--~~~~~~~~~~~~~~~~~~ 259 (374)
T 2jhf_A 187 AKVTQGSTCAVFGLGGVGLSVIMGCKAAG-AARIIGVDINKDKF----AKAKEVGATECV--NPQDYKKPIQEVLTEMSN 259 (374)
T ss_dssp TCCCTTCEEEEECCSHHHHHHHHHHHHTT-CSEEEEECSCGGGH----HHHHHTTCSEEE--CGGGCSSCHHHHHHHHTT
T ss_pred cCCCCCCEEEEECCCHHHHHHHHHHHHcC-CCeEEEEcCCHHHH----HHHHHhCCceEe--cccccchhHHHHHHHHhC
Confidence 3678899999999754 556677777754 22799999998443 333332111122 2221 110 0 0112
Q ss_pred CcEeEEEEeCCChhHHHHHHHHHhccCCCC-cEEEEE
Q 021911 212 GMVDVIFSDVAQPDQARILALNASYFLKAG-GHFVIS 247 (305)
Q Consensus 212 ~~fD~V~~d~~~~~~~~~l~~~a~~~LkpG-G~lv~s 247 (305)
..+|+||-....+.. +. .+.++|+++ |++++.
T Consensus 260 ~g~D~vid~~g~~~~---~~-~~~~~l~~~~G~iv~~ 292 (374)
T 2jhf_A 260 GGVDFSFEVIGRLDT---MV-TALSCCQEAYGVSVIV 292 (374)
T ss_dssp SCBSEEEECSCCHHH---HH-HHHHHBCTTTCEEEEC
T ss_pred CCCcEEEECCCCHHH---HH-HHHHHhhcCCcEEEEe
Confidence 379999977665432 33 666899999 998874
|
| >2cf5_A Atccad5, CAD, cinnamyl alcohol dehydrogenase; lignin biosynthesis, metal-binding, NADP, oxidoreductase, zinc; 2.0A {Arabidopsis thaliana} PDB: 2cf6_A* | Back alignment and structure |
|---|
Probab=92.93 E-value=0.099 Score=47.72 Aligned_cols=97 Identities=21% Similarity=0.236 Sum_probs=57.3
Q ss_pred cCCC-CCCEEEEEecCC-CccHHHHHhhhCCCcEEEEEeCChHHHHHHHHHHHcCCCe-EEEEccCCCCcccccCCCcEe
Q 021911 139 IWIK-PGARVLYLGAAS-GTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKRTNV-IPIIEDARHPAKYRMLVGMVD 215 (305)
Q Consensus 139 ~~~~-~g~~VLDlG~G~-G~~t~~la~~~~~~~~V~avD~s~~~~~~l~~~a~~~~nI-~~~~~D~~~~~~~~~~~~~fD 215 (305)
..++ ++++||-+|+|+ |..+..+|+..+ .+|+++|.++.. ++.+++.-.. .++ |..+..........+|
T Consensus 175 ~~~~~~g~~VlV~GaG~vG~~a~qlak~~G--a~Vi~~~~~~~~----~~~~~~~lGa~~vi--~~~~~~~~~~~~~g~D 246 (357)
T 2cf5_A 175 FGLKQPGLRGGILGLGGVGHMGVKIAKAMG--HHVTVISSSNKK----REEALQDLGADDYV--IGSDQAKMSELADSLD 246 (357)
T ss_dssp TSTTSTTCEEEEECCSHHHHHHHHHHHHHT--CEEEEEESSTTH----HHHHHTTSCCSCEE--ETTCHHHHHHSTTTEE
T ss_pred cCCCCCCCEEEEECCCHHHHHHHHHHHHCC--CeEEEEeCChHH----HHHHHHHcCCceee--ccccHHHHHHhcCCCC
Confidence 3566 899999998742 445666777765 489999998743 3333312111 111 2111111111224799
Q ss_pred EEEEeCCChhHHHHHHHHHhccCCCCcEEEEE
Q 021911 216 VIFSDVAQPDQARILALNASYFLKAGGHFVIS 247 (305)
Q Consensus 216 ~V~~d~~~~~~~~~l~~~a~~~LkpGG~lv~s 247 (305)
+||-....+.. +. .+.++|+++|++++.
T Consensus 247 ~vid~~g~~~~---~~-~~~~~l~~~G~iv~~ 274 (357)
T 2cf5_A 247 YVIDTVPVHHA---LE-PYLSLLKLDGKLILM 274 (357)
T ss_dssp EEEECCCSCCC---SH-HHHTTEEEEEEEEEC
T ss_pred EEEECCCChHH---HH-HHHHHhccCCEEEEe
Confidence 99976664422 22 455799999999875
|
| >1e3i_A Alcohol dehydrogenase, class II; HET: NAD; 2.08A {Mus musculus} SCOP: b.35.1.2 c.2.1.1 PDB: 1e3e_A* 1e3l_A* 3cos_A* | Back alignment and structure |
|---|
Probab=92.82 E-value=0.2 Score=45.86 Aligned_cols=98 Identities=17% Similarity=0.198 Sum_probs=59.2
Q ss_pred cCCCCCCEEEEEecCC-CccHHHHHhhhCCCcEEEEEeCChHHHHHHHHHHHcCCCeEEEEccCCC----Ccc-c-ccCC
Q 021911 139 IWIKPGARVLYLGAAS-GTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKRTNVIPIIEDARH----PAK-Y-RMLV 211 (305)
Q Consensus 139 ~~~~~g~~VLDlG~G~-G~~t~~la~~~~~~~~V~avD~s~~~~~~l~~~a~~~~nI~~~~~D~~~----~~~-~-~~~~ 211 (305)
..++++++||-+|+|+ |..+..+|+..+ ..+|+++|.++... +.+++..--..+ |..+ ... . ....
T Consensus 191 ~~~~~g~~VlV~GaG~vG~~aiqlak~~G-a~~Vi~~~~~~~~~----~~a~~lGa~~vi--~~~~~~~~~~~~v~~~~~ 263 (376)
T 1e3i_A 191 AKVTPGSTCAVFGLGCVGLSAIIGCKIAG-ASRIIAIDINGEKF----PKAKALGATDCL--NPRELDKPVQDVITELTA 263 (376)
T ss_dssp SCCCTTCEEEEECCSHHHHHHHHHHHHTT-CSEEEEECSCGGGH----HHHHHTTCSEEE--CGGGCSSCHHHHHHHHHT
T ss_pred cCCCCCCEEEEECCCHHHHHHHHHHHHcC-CCeEEEEcCCHHHH----HHHHHhCCcEEE--ccccccchHHHHHHHHhC
Confidence 3678899999999753 556677777754 23799999998443 333332111122 2211 110 0 0012
Q ss_pred CcEeEEEEeCCChhHHHHHHHHHhccCCCC-cEEEEE
Q 021911 212 GMVDVIFSDVAQPDQARILALNASYFLKAG-GHFVIS 247 (305)
Q Consensus 212 ~~fD~V~~d~~~~~~~~~l~~~a~~~LkpG-G~lv~s 247 (305)
..+|+||-....+. .+. .+.++|+++ |++++.
T Consensus 264 ~g~Dvvid~~G~~~---~~~-~~~~~l~~~~G~iv~~ 296 (376)
T 1e3i_A 264 GGVDYSLDCAGTAQ---TLK-AAVDCTVLGWGSCTVV 296 (376)
T ss_dssp SCBSEEEESSCCHH---HHH-HHHHTBCTTTCEEEEC
T ss_pred CCccEEEECCCCHH---HHH-HHHHHhhcCCCEEEEE
Confidence 37999997665533 233 666899999 999864
|
| >1yqd_A Sinapyl alcohol dehydrogenase; lignin, monolignol, oxidoreductase, zinc-dependent, plant DE biosynthesis, substrate inhibition; HET: NAP; 1.65A {Populus tremuloides} PDB: 1yqx_A* | Back alignment and structure |
|---|
Probab=92.80 E-value=0.098 Score=47.95 Aligned_cols=97 Identities=18% Similarity=0.221 Sum_probs=56.4
Q ss_pred cCCC-CCCEEEEEecCC-CccHHHHHhhhCCCcEEEEEeCChHHHHHHHHHHH-cCCCeEEEEccCCCCcccccCCCcEe
Q 021911 139 IWIK-PGARVLYLGAAS-GTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAK-KRTNVIPIIEDARHPAKYRMLVGMVD 215 (305)
Q Consensus 139 ~~~~-~g~~VLDlG~G~-G~~t~~la~~~~~~~~V~avD~s~~~~~~l~~~a~-~~~nI~~~~~D~~~~~~~~~~~~~fD 215 (305)
..+. ++++||-+|+|. |..+..+|...+ .+|++++.++... +.+. +..--..+ |..+..........+|
T Consensus 182 ~~~~~~g~~VlV~GaG~vG~~~~q~a~~~G--a~Vi~~~~~~~~~----~~~~~~lGa~~v~--~~~~~~~~~~~~~~~D 253 (366)
T 1yqd_A 182 FGLDEPGKHIGIVGLGGLGHVAVKFAKAFG--SKVTVISTSPSKK----EEALKNFGADSFL--VSRDQEQMQAAAGTLD 253 (366)
T ss_dssp TTCCCTTCEEEEECCSHHHHHHHHHHHHTT--CEEEEEESCGGGH----HHHHHTSCCSEEE--ETTCHHHHHHTTTCEE
T ss_pred cCcCCCCCEEEEECCCHHHHHHHHHHHHCC--CEEEEEeCCHHHH----HHHHHhcCCceEE--eccCHHHHHHhhCCCC
Confidence 3566 899999998743 445566666654 4899999988433 2333 22111122 3222211111224799
Q ss_pred EEEEeCCChhHHHHHHHHHhccCCCCcEEEEE
Q 021911 216 VIFSDVAQPDQARILALNASYFLKAGGHFVIS 247 (305)
Q Consensus 216 ~V~~d~~~~~~~~~l~~~a~~~LkpGG~lv~s 247 (305)
+||.....+.. +. .+.+.|+++|+++..
T Consensus 254 ~vid~~g~~~~---~~-~~~~~l~~~G~iv~~ 281 (366)
T 1yqd_A 254 GIIDTVSAVHP---LL-PLFGLLKSHGKLILV 281 (366)
T ss_dssp EEEECCSSCCC---SH-HHHHHEEEEEEEEEC
T ss_pred EEEECCCcHHH---HH-HHHHHHhcCCEEEEE
Confidence 99987664421 12 444688999998874
|
| >3llv_A Exopolyphosphatase-related protein; NAD(P)-binding, rossmann, PSI, M structural genomics; 1.70A {Archaeoglobus fulgidus} | Back alignment and structure |
|---|
Probab=92.79 E-value=0.31 Score=37.71 Aligned_cols=96 Identities=11% Similarity=0.087 Sum_probs=59.7
Q ss_pred CCEEEEEecCCCccHHHHHhhhCC-CcEEEEEeCChHHHHHHHHHHHcCCCeEEEEccCCCCccccc-CCCcEeEEEEeC
Q 021911 144 GARVLYLGAASGTTVSHVSDIVGP-NGVVYAVEFSHRSGRDLVNMAKKRTNVIPIIEDARHPAKYRM-LVGMVDVIFSDV 221 (305)
Q Consensus 144 g~~VLDlG~G~G~~t~~la~~~~~-~~~V~avD~s~~~~~~l~~~a~~~~nI~~~~~D~~~~~~~~~-~~~~fD~V~~d~ 221 (305)
..+|+-+|+ |.+..++++.+.. ...|+++|.++..+ +.+.. ..+.++..|+++...... ....+|+|++..
T Consensus 6 ~~~v~I~G~--G~iG~~la~~L~~~g~~V~~id~~~~~~----~~~~~-~~~~~~~gd~~~~~~l~~~~~~~~d~vi~~~ 78 (141)
T 3llv_A 6 RYEYIVIGS--EAAGVGLVRELTAAGKKVLAVDKSKEKI----ELLED-EGFDAVIADPTDESFYRSLDLEGVSAVLITG 78 (141)
T ss_dssp CCSEEEECC--SHHHHHHHHHHHHTTCCEEEEESCHHHH----HHHHH-TTCEEEECCTTCHHHHHHSCCTTCSEEEECC
T ss_pred CCEEEEECC--CHHHHHHHHHHHHCCCeEEEEECCHHHH----HHHHH-CCCcEEECCCCCHHHHHhCCcccCCEEEEec
Confidence 357888887 6688888876532 34799999998443 33333 357788899987654321 235789999887
Q ss_pred CChhHHHHHHHHHhccCCCCcEEEEEE
Q 021911 222 AQPDQARILALNASYFLKAGGHFVISI 248 (305)
Q Consensus 222 ~~~~~~~~l~~~a~~~LkpGG~lv~s~ 248 (305)
+.......+. ...+.+. ..+++...
T Consensus 79 ~~~~~n~~~~-~~a~~~~-~~~iia~~ 103 (141)
T 3llv_A 79 SDDEFNLKIL-KALRSVS-DVYAIVRV 103 (141)
T ss_dssp SCHHHHHHHH-HHHHHHC-CCCEEEEE
T ss_pred CCHHHHHHHH-HHHHHhC-CceEEEEE
Confidence 7544333333 3344444 44555443
|
| >2fzw_A Alcohol dehydrogenase class III CHI chain; S-nitrosoglutathione reductase, glutathione-dependent formaldehyde dehydrogenase, oxidoreductase; HET: NAD; 1.84A {Homo sapiens} SCOP: b.35.1.2 c.2.1.1 PDB: 3qj5_A* 1mc5_A* 2fze_A* 1m6w_A* 1ma0_A* 1mp0_A* 1teh_A* 1m6h_A* | Back alignment and structure |
|---|
Probab=92.79 E-value=0.18 Score=46.11 Aligned_cols=98 Identities=18% Similarity=0.204 Sum_probs=59.3
Q ss_pred cCCCCCCEEEEEecCC-CccHHHHHhhhCCCcEEEEEeCChHHHHHHHHHHHcCCCeEEEEccCCC----Ccc-c-ccCC
Q 021911 139 IWIKPGARVLYLGAAS-GTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKRTNVIPIIEDARH----PAK-Y-RMLV 211 (305)
Q Consensus 139 ~~~~~g~~VLDlG~G~-G~~t~~la~~~~~~~~V~avD~s~~~~~~l~~~a~~~~nI~~~~~D~~~----~~~-~-~~~~ 211 (305)
..++++++||-+|+|. |..+..+|+..+ ..+|+++|.++...+.+ ++..--..+ |..+ ... . ....
T Consensus 186 ~~~~~g~~VlV~GaG~vG~~avqla~~~G-a~~Vi~~~~~~~~~~~~----~~lGa~~vi--~~~~~~~~~~~~v~~~~~ 258 (373)
T 2fzw_A 186 AKLEPGSVCAVFGLGGVGLAVIMGCKVAG-ASRIIGVDINKDKFARA----KEFGATECI--NPQDFSKPIQEVLIEMTD 258 (373)
T ss_dssp TCCCTTCEEEEECCSHHHHHHHHHHHHHT-CSEEEEECSCGGGHHHH----HHHTCSEEE--CGGGCSSCHHHHHHHHTT
T ss_pred cCCCCCCEEEEECCCHHHHHHHHHHHHcC-CCeEEEEcCCHHHHHHH----HHcCCceEe--ccccccccHHHHHHHHhC
Confidence 3678899999999754 556777777764 22799999998543332 221111122 2211 110 0 0112
Q ss_pred CcEeEEEEeCCChhHHHHHHHHHhccCCCC-cEEEEE
Q 021911 212 GMVDVIFSDVAQPDQARILALNASYFLKAG-GHFVIS 247 (305)
Q Consensus 212 ~~fD~V~~d~~~~~~~~~l~~~a~~~LkpG-G~lv~s 247 (305)
..+|+||-....+.. +. .+.++|+++ |++++.
T Consensus 259 ~g~D~vid~~g~~~~---~~-~~~~~l~~~~G~iv~~ 291 (373)
T 2fzw_A 259 GGVDYSFECIGNVKV---MR-AALEACHKGWGVSVVV 291 (373)
T ss_dssp SCBSEEEECSCCHHH---HH-HHHHTBCTTTCEEEEC
T ss_pred CCCCEEEECCCcHHH---HH-HHHHhhccCCcEEEEE
Confidence 379999977665432 33 666899999 999874
|
| >4b7c_A Probable oxidoreductase; NADP cofactor, rossmann fold; HET: MES; 2.10A {Pseudomonas aeruginosa PA01} PDB: 4b7x_A* | Back alignment and structure |
|---|
Probab=92.75 E-value=0.23 Score=44.65 Aligned_cols=97 Identities=20% Similarity=0.178 Sum_probs=60.8
Q ss_pred ccCCCCCCEEEEEec--CCCccHHHHHhhhCCCcEEEEEeCChHHHHHHHHHH-HcCCCeEEEEccCCCCccc----ccC
Q 021911 138 NIWIKPGARVLYLGA--ASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMA-KKRTNVIPIIEDARHPAKY----RML 210 (305)
Q Consensus 138 ~~~~~~g~~VLDlG~--G~G~~t~~la~~~~~~~~V~avD~s~~~~~~l~~~a-~~~~nI~~~~~D~~~~~~~----~~~ 210 (305)
...++++++||-.|| +.|..+..++...+ .+|++++.++.. ++.+ ++..--..+ |..+.... ...
T Consensus 144 ~~~~~~g~~vlI~Ga~g~iG~~~~~~a~~~G--a~Vi~~~~~~~~----~~~~~~~~g~~~~~--~~~~~~~~~~~~~~~ 215 (336)
T 4b7c_A 144 VGQPKNGETVVISGAAGAVGSVAGQIARLKG--CRVVGIAGGAEK----CRFLVEELGFDGAI--DYKNEDLAAGLKREC 215 (336)
T ss_dssp TTCCCTTCEEEESSTTSHHHHHHHHHHHHTT--CEEEEEESSHHH----HHHHHHTTCCSEEE--ETTTSCHHHHHHHHC
T ss_pred hcCCCCCCEEEEECCCCHHHHHHHHHHHHCC--CEEEEEeCCHHH----HHHHHHHcCCCEEE--ECCCHHHHHHHHHhc
Confidence 346889999999998 34667777777654 489999999843 3334 332111122 22221110 011
Q ss_pred CCcEeEEEEeCCChhHHHHHHHHHhccCCCCcEEEEE
Q 021911 211 VGMVDVIFSDVAQPDQARILALNASYFLKAGGHFVIS 247 (305)
Q Consensus 211 ~~~fD~V~~d~~~~~~~~~l~~~a~~~LkpGG~lv~s 247 (305)
...+|+||.+... ..+. .+.+.|+++|++++.
T Consensus 216 ~~~~d~vi~~~g~----~~~~-~~~~~l~~~G~iv~~ 247 (336)
T 4b7c_A 216 PKGIDVFFDNVGG----EILD-TVLTRIAFKARIVLC 247 (336)
T ss_dssp TTCEEEEEESSCH----HHHH-HHHTTEEEEEEEEEC
T ss_pred CCCceEEEECCCc----chHH-HHHHHHhhCCEEEEE
Confidence 2479999876663 2444 778999999999875
|
| >1jvb_A NAD(H)-dependent alcohol dehydrogenase; archaeon, zinc, oxidoreductase; HET: MSE; 1.85A {Sulfolobus solfataricus} SCOP: b.35.1.2 c.2.1.1 PDB: 1r37_A* 1nto_A 1nvg_A 3i4c_A 2eer_A* | Back alignment and structure |
|---|
Probab=92.74 E-value=0.17 Score=45.93 Aligned_cols=99 Identities=19% Similarity=0.238 Sum_probs=60.8
Q ss_pred ccCCCCCCEEEEEecC--CCccHHHHHhhh-CCCcEEEEEeCChHHHHHHHHHHHcCCCeEEEEccCCCCcc---c-ccC
Q 021911 138 NIWIKPGARVLYLGAA--SGTTVSHVSDIV-GPNGVVYAVEFSHRSGRDLVNMAKKRTNVIPIIEDARHPAK---Y-RML 210 (305)
Q Consensus 138 ~~~~~~g~~VLDlG~G--~G~~t~~la~~~-~~~~~V~avD~s~~~~~~l~~~a~~~~nI~~~~~D~~~~~~---~-~~~ 210 (305)
...++++++||-+|+| .|..+..++... + .+|+++|.++...+.+ ++...-..+ |..+... . ...
T Consensus 165 ~~~~~~g~~vlV~Gagg~iG~~~~~~a~~~~G--a~Vi~~~~~~~~~~~~----~~~g~~~~~--~~~~~~~~~~~~~~~ 236 (347)
T 1jvb_A 165 KASLDPTKTLLVVGAGGGLGTMAVQIAKAVSG--ATIIGVDVREEAVEAA----KRAGADYVI--NASMQDPLAEIRRIT 236 (347)
T ss_dssp HTTCCTTCEEEEETTTSHHHHHHHHHHHHHTC--CEEEEEESSHHHHHHH----HHHTCSEEE--ETTTSCHHHHHHHHT
T ss_pred hcCCCCCCEEEEECCCccHHHHHHHHHHHcCC--CeEEEEcCCHHHHHHH----HHhCCCEEe--cCCCccHHHHHHHHh
Confidence 3467899999999987 444566666665 4 4899999998543333 221111112 2222111 0 111
Q ss_pred C-CcEeEEEEeCCChhHHHHHHHHHhccCCCCcEEEEEE
Q 021911 211 V-GMVDVIFSDVAQPDQARILALNASYFLKAGGHFVISI 248 (305)
Q Consensus 211 ~-~~fD~V~~d~~~~~~~~~l~~~a~~~LkpGG~lv~s~ 248 (305)
. ..+|+||.+...+. .+. .+.++|+++|++++.-
T Consensus 237 ~~~~~d~vi~~~g~~~---~~~-~~~~~l~~~G~iv~~g 271 (347)
T 1jvb_A 237 ESKGVDAVIDLNNSEK---TLS-VYPKALAKQGKYVMVG 271 (347)
T ss_dssp TTSCEEEEEESCCCHH---HHT-TGGGGEEEEEEEEECC
T ss_pred cCCCceEEEECCCCHH---HHH-HHHHHHhcCCEEEEEC
Confidence 2 47999998776542 334 6778999999998753
|
| >1v3u_A Leukotriene B4 12- hydroxydehydrogenase/prostaglandin 15-keto reductase; rossmann fold, riken structural genomics/proteomics initiative, RSGI; 2.00A {Cavia porcellus} SCOP: b.35.1.2 c.2.1.1 PDB: 1v3t_A 1v3v_A* 2dm6_A* 1zsv_A 2y05_A* | Back alignment and structure |
|---|
Probab=92.69 E-value=0.28 Score=44.02 Aligned_cols=96 Identities=20% Similarity=0.168 Sum_probs=59.1
Q ss_pred cCCCCCCEEEEEec--CCCccHHHHHhhhCCCcEEEEEeCChHHHHHHHHHHHcCCCeEEEEccCCC-Cc--c-c-ccCC
Q 021911 139 IWIKPGARVLYLGA--ASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKRTNVIPIIEDARH-PA--K-Y-RMLV 211 (305)
Q Consensus 139 ~~~~~g~~VLDlG~--G~G~~t~~la~~~~~~~~V~avD~s~~~~~~l~~~a~~~~nI~~~~~D~~~-~~--~-~-~~~~ 211 (305)
..++++++||-.|| +.|..+..++...+ .+|+++|.++...+ .+++.. .. ...|..+ .. . . ....
T Consensus 141 ~~~~~g~~vlV~Ga~ggiG~~~~~~~~~~G--~~V~~~~~~~~~~~----~~~~~g-~~-~~~d~~~~~~~~~~~~~~~~ 212 (333)
T 1v3u_A 141 CGVKGGETVLVSAAAGAVGSVVGQIAKLKG--CKVVGAAGSDEKIA----YLKQIG-FD-AAFNYKTVNSLEEALKKASP 212 (333)
T ss_dssp SCCCSSCEEEEESTTBHHHHHHHHHHHHTT--CEEEEEESSHHHHH----HHHHTT-CS-EEEETTSCSCHHHHHHHHCT
T ss_pred hCCCCCCEEEEecCCCcHHHHHHHHHHHCC--CEEEEEeCCHHHHH----HHHhcC-Cc-EEEecCCHHHHHHHHHHHhC
Confidence 36788999999997 44556666666543 58999999984433 333221 11 1224433 11 0 0 0012
Q ss_pred CcEeEEEEeCCChhHHHHHHHHHhccCCCCcEEEEE
Q 021911 212 GMVDVIFSDVAQPDQARILALNASYFLKAGGHFVIS 247 (305)
Q Consensus 212 ~~fD~V~~d~~~~~~~~~l~~~a~~~LkpGG~lv~s 247 (305)
..+|+|+.+...+ .+. .+.+.|+++|++++.
T Consensus 213 ~~~d~vi~~~g~~----~~~-~~~~~l~~~G~~v~~ 243 (333)
T 1v3u_A 213 DGYDCYFDNVGGE----FLN-TVLSQMKDFGKIAIC 243 (333)
T ss_dssp TCEEEEEESSCHH----HHH-HHHTTEEEEEEEEEC
T ss_pred CCCeEEEECCChH----HHH-HHHHHHhcCCEEEEE
Confidence 4799999877642 344 777899999999875
|
| >3l4b_C TRKA K+ channel protien TM1088B; potassium channel, ring-gating complex, structural GEN PSI-2-2, protein structure initiative; HET: AMP; 3.45A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=92.66 E-value=0.19 Score=42.32 Aligned_cols=95 Identities=16% Similarity=0.055 Sum_probs=60.8
Q ss_pred EEEEEecCCCccHHHHHhhhC-CCcEEEEEeCChHHHHHHHHHHHcCCCeEEEEccCCCCccccc-CCCcEeEEEEeCCC
Q 021911 146 RVLYLGAASGTTVSHVSDIVG-PNGVVYAVEFSHRSGRDLVNMAKKRTNVIPIIEDARHPAKYRM-LVGMVDVIFSDVAQ 223 (305)
Q Consensus 146 ~VLDlG~G~G~~t~~la~~~~-~~~~V~avD~s~~~~~~l~~~a~~~~nI~~~~~D~~~~~~~~~-~~~~fD~V~~d~~~ 223 (305)
+|+=+|+ |.++.++++.+. ....|+.+|.++..++. ..+...+.++..|+++...... ....+|+|++..+.
T Consensus 2 ~iiIiG~--G~~G~~la~~L~~~g~~v~vid~~~~~~~~----l~~~~~~~~i~gd~~~~~~l~~a~i~~ad~vi~~~~~ 75 (218)
T 3l4b_C 2 KVIIIGG--ETTAYYLARSMLSRKYGVVIINKDRELCEE----FAKKLKATIIHGDGSHKEILRDAEVSKNDVVVILTPR 75 (218)
T ss_dssp CEEEECC--HHHHHHHHHHHHHTTCCEEEEESCHHHHHH----HHHHSSSEEEESCTTSHHHHHHHTCCTTCEEEECCSC
T ss_pred EEEEECC--CHHHHHHHHHHHhCCCeEEEEECCHHHHHH----HHHHcCCeEEEcCCCCHHHHHhcCcccCCEEEEecCC
Confidence 4566554 788888887653 23479999999844333 2222367889999987654321 24578999988877
Q ss_pred hhHHHHHHHHHhccCCCCcEEEEE
Q 021911 224 PDQARILALNASYFLKAGGHFVIS 247 (305)
Q Consensus 224 ~~~~~~l~~~a~~~LkpGG~lv~s 247 (305)
......+. ...+.+.+.-+++..
T Consensus 76 d~~n~~~~-~~a~~~~~~~~iia~ 98 (218)
T 3l4b_C 76 DEVNLFIA-QLVMKDFGVKRVVSL 98 (218)
T ss_dssp HHHHHHHH-HHHHHTSCCCEEEEC
T ss_pred cHHHHHHH-HHHHHHcCCCeEEEE
Confidence 66555555 444445555555543
|
| >3goh_A Alcohol dehydrogenase, zinc-containing; NP_718042.1, alcohol dehydrogenase superfamily protein, ALCO dehydrogenase groes-like domain; 1.55A {Shewanella oneidensis} | Back alignment and structure |
|---|
Probab=92.65 E-value=0.094 Score=46.85 Aligned_cols=93 Identities=25% Similarity=0.281 Sum_probs=58.0
Q ss_pred ccccCCCCCCEEEEEecCC-CccHHHHHhhhCCCcEEEEEeCChHHHHHHHHHHHcCCCeEEEEccCCCCcccccCCCcE
Q 021911 136 VDNIWIKPGARVLYLGAAS-GTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKRTNVIPIIEDARHPAKYRMLVGMV 214 (305)
Q Consensus 136 l~~~~~~~g~~VLDlG~G~-G~~t~~la~~~~~~~~V~avD~s~~~~~~l~~~a~~~~nI~~~~~D~~~~~~~~~~~~~f 214 (305)
|+...++++++||-+|+|+ |..+..+|+..+ .+|++++ |++..+. +++. ....+.-| ... ....+
T Consensus 135 l~~~~~~~g~~VlV~GaG~vG~~a~qlak~~G--a~Vi~~~-~~~~~~~----~~~l-Ga~~v~~d---~~~---v~~g~ 200 (315)
T 3goh_A 135 FEKIPLTKQREVLIVGFGAVNNLLTQMLNNAG--YVVDLVS-ASLSQAL----AAKR-GVRHLYRE---PSQ---VTQKY 200 (315)
T ss_dssp HTTSCCCSCCEEEEECCSHHHHHHHHHHHHHT--CEEEEEC-SSCCHHH----HHHH-TEEEEESS---GGG---CCSCE
T ss_pred HhhcCCCCCCEEEEECCCHHHHHHHHHHHHcC--CEEEEEE-ChhhHHH----HHHc-CCCEEEcC---HHH---hCCCc
Confidence 3445788999999999953 667788888865 4899999 8744333 3222 22323223 111 24689
Q ss_pred eEEEEeCCChhHHHHHHHHHhccCCCCcEEEEE
Q 021911 215 DVIFSDVAQPDQARILALNASYFLKAGGHFVIS 247 (305)
Q Consensus 215 D~V~~d~~~~~~~~~l~~~a~~~LkpGG~lv~s 247 (305)
|+||-....+. +. .+.++|+++|+++..
T Consensus 201 Dvv~d~~g~~~----~~-~~~~~l~~~G~~v~~ 228 (315)
T 3goh_A 201 FAIFDAVNSQN----AA-ALVPSLKANGHIICI 228 (315)
T ss_dssp EEEECC------------TTGGGEEEEEEEEEE
T ss_pred cEEEECCCchh----HH-HHHHHhcCCCEEEEE
Confidence 99986554332 23 667899999999876
|
| >1vj0_A Alcohol dehydrogenase, zinc-containing; TM0436, structural G JCSG, PSI, protein structure initiative, joint center for S genomics; 2.00A {Thermotoga maritima} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=92.57 E-value=0.14 Score=47.14 Aligned_cols=102 Identities=17% Similarity=0.203 Sum_probs=59.5
Q ss_pred cccC-CCCCCEEEEEecCC-CccHHHHHhhhCCCcEEEEEeCChHHHHHHHHHHHcCCCeEEEEcc---CCCCc-ccc-c
Q 021911 137 DNIW-IKPGARVLYLGAAS-GTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKRTNVIPIIED---ARHPA-KYR-M 209 (305)
Q Consensus 137 ~~~~-~~~g~~VLDlG~G~-G~~t~~la~~~~~~~~V~avD~s~~~~~~l~~~a~~~~nI~~~~~D---~~~~~-~~~-~ 209 (305)
.... ++++++||-+|+|. |..+..+|+..+ ..+|+++|.+++. ++.+++..--.++..+ -.++. ... .
T Consensus 188 ~~~~~~~~g~~VlV~GaG~vG~~aiqlak~~G-a~~Vi~~~~~~~~----~~~~~~lGa~~vi~~~~~~~~~~~~~v~~~ 262 (380)
T 1vj0_A 188 DEYPESFAGKTVVIQGAGPLGLFGVVIARSLG-AENVIVIAGSPNR----LKLAEEIGADLTLNRRETSVEERRKAIMDI 262 (380)
T ss_dssp HTCSSCCBTCEEEEECCSHHHHHHHHHHHHTT-BSEEEEEESCHHH----HHHHHHTTCSEEEETTTSCHHHHHHHHHHH
T ss_pred HhcCCCCCCCEEEEECcCHHHHHHHHHHHHcC-CceEEEEcCCHHH----HHHHHHcCCcEEEeccccCcchHHHHHHHH
Confidence 3346 78899999999652 556667777653 2489999999844 3334433111222211 00000 000 0
Q ss_pred C-CCcEeEEEEeCCChhHHHHHHHHHhccCCCCcEEEEE
Q 021911 210 L-VGMVDVIFSDVAQPDQARILALNASYFLKAGGHFVIS 247 (305)
Q Consensus 210 ~-~~~fD~V~~d~~~~~~~~~l~~~a~~~LkpGG~lv~s 247 (305)
. ...+|+||-....+.. +. .+.++|+++|++++.
T Consensus 263 ~~g~g~Dvvid~~g~~~~---~~-~~~~~l~~~G~iv~~ 297 (380)
T 1vj0_A 263 THGRGADFILEATGDSRA---LL-EGSELLRRGGFYSVA 297 (380)
T ss_dssp TTTSCEEEEEECSSCTTH---HH-HHHHHEEEEEEEEEC
T ss_pred hCCCCCcEEEECCCCHHH---HH-HHHHHHhcCCEEEEE
Confidence 1 1369999977765433 23 556799999998875
|
| >3nx4_A Putative oxidoreductase; csgid, structural genomics, center for struc genomics of infectious diseases, PSI, protein structure INI; HET: MSE NAP; 1.90A {Salmonella enterica subsp} PDB: 1o89_A 1o8c_A* | Back alignment and structure |
|---|
Probab=92.44 E-value=0.11 Score=46.53 Aligned_cols=95 Identities=20% Similarity=0.196 Sum_probs=56.8
Q ss_pred CCCC--CCEEEEEec--CCCccHHHHHhhhCCCcEEEEEeCChHHHHHHHHHHHcCCCeEEEEccCCCCcccccCCCcEe
Q 021911 140 WIKP--GARVLYLGA--ASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKRTNVIPIIEDARHPAKYRMLVGMVD 215 (305)
Q Consensus 140 ~~~~--g~~VLDlG~--G~G~~t~~la~~~~~~~~V~avD~s~~~~~~l~~~a~~~~nI~~~~~D~~~~~~~~~~~~~fD 215 (305)
.+++ +. ||-.|+ +.|..+..+|+..+ .+|++++.++...+.+.+.-. + ..+-..|..... ......+|
T Consensus 142 ~~~~~~g~-VlV~Ga~G~vG~~aiqla~~~G--a~Vi~~~~~~~~~~~~~~lGa--~-~vi~~~~~~~~~--~~~~~~~d 213 (324)
T 3nx4_A 142 GIRPQDGE-VVVTGASGGVGSTAVALLHKLG--YQVAAVSGRESTHGYLKSLGA--N-RILSRDEFAESR--PLEKQLWA 213 (324)
T ss_dssp TCCGGGCC-EEESSTTSHHHHHHHHHHHHTT--CCEEEEESCGGGHHHHHHHTC--S-EEEEGGGSSCCC--SSCCCCEE
T ss_pred ccCCCCCe-EEEECCCcHHHHHHHHHHHHcC--CEEEEEeCCHHHHHHHHhcCC--C-EEEecCCHHHHH--hhcCCCcc
Confidence 4555 45 998886 45678888888865 489999999855433332211 1 111111211111 11235799
Q ss_pred EEEEeCCChhHHHHHHHHHhccCCCCcEEEEE
Q 021911 216 VIFSDVAQPDQARILALNASYFLKAGGHFVIS 247 (305)
Q Consensus 216 ~V~~d~~~~~~~~~l~~~a~~~LkpGG~lv~s 247 (305)
+||-....+ .+. .+.+.|+++|+++..
T Consensus 214 ~v~d~~g~~----~~~-~~~~~l~~~G~iv~~ 240 (324)
T 3nx4_A 214 GAIDTVGDK----VLA-KVLAQMNYGGCVAAC 240 (324)
T ss_dssp EEEESSCHH----HHH-HHHHTEEEEEEEEEC
T ss_pred EEEECCCcH----HHH-HHHHHHhcCCEEEEE
Confidence 988655432 454 778899999999875
|
| >2d8a_A PH0655, probable L-threonine 3-dehydrogenase; pyrococcus horikoshii OT3, structural genomics; HET: NAD; 2.05A {Pyrococcus horikoshii} PDB: 2dfv_A* 3gfb_A* | Back alignment and structure |
|---|
Probab=92.27 E-value=0.17 Score=45.83 Aligned_cols=99 Identities=23% Similarity=0.131 Sum_probs=58.2
Q ss_pred cccCCCCCCEEEEEecCC-CccHHHHHhhhCCCcEEEEEeCChHHHHHHHHHHHcCCCeEEEEccCCCCc--c-cc-c-C
Q 021911 137 DNIWIKPGARVLYLGAAS-GTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKRTNVIPIIEDARHPA--K-YR-M-L 210 (305)
Q Consensus 137 ~~~~~~~g~~VLDlG~G~-G~~t~~la~~~~~~~~V~avD~s~~~~~~l~~~a~~~~nI~~~~~D~~~~~--~-~~-~-~ 210 (305)
....+ ++++||-+|+|. |..+..+|...+ ..+|+++|.++...+ .+++..--..+ |..+.. . .. . .
T Consensus 162 ~~~~~-~g~~VlV~GaG~vG~~~~q~a~~~G-a~~Vi~~~~~~~~~~----~~~~~Ga~~~~--~~~~~~~~~~v~~~~~ 233 (348)
T 2d8a_A 162 LAGPI-SGKSVLITGAGPLGLLGIAVAKASG-AYPVIVSEPSDFRRE----LAKKVGADYVI--NPFEEDVVKEVMDITD 233 (348)
T ss_dssp TTSCC-TTCCEEEECCSHHHHHHHHHHHHTT-CCSEEEECSCHHHHH----HHHHHTCSEEE--CTTTSCHHHHHHHHTT
T ss_pred HhcCC-CCCEEEEECCCHHHHHHHHHHHHcC-CCEEEEECCCHHHHH----HHHHhCCCEEE--CCCCcCHHHHHHHHcC
Confidence 33456 899999999843 556666776654 227999999984433 33221111122 222211 1 00 0 1
Q ss_pred CCcEeEEEEeCCChhHHHHHHHHHhccCCCCcEEEEE
Q 021911 211 VGMVDVIFSDVAQPDQARILALNASYFLKAGGHFVIS 247 (305)
Q Consensus 211 ~~~fD~V~~d~~~~~~~~~l~~~a~~~LkpGG~lv~s 247 (305)
...+|+||.....+.. +. .+.+.|+++|+++..
T Consensus 234 g~g~D~vid~~g~~~~---~~-~~~~~l~~~G~iv~~ 266 (348)
T 2d8a_A 234 GNGVDVFLEFSGAPKA---LE-QGLQAVTPAGRVSLL 266 (348)
T ss_dssp TSCEEEEEECSCCHHH---HH-HHHHHEEEEEEEEEC
T ss_pred CCCCCEEEECCCCHHH---HH-HHHHHHhcCCEEEEE
Confidence 2369999987765432 33 566899999998875
|
| >1eg2_A Modification methylase RSRI; rossmann fold, exocyclic amino DNA methyltransferase RSRI, D binding, DNA modification, DNA methylation; HET: MTA; 1.75A {Rhodobacter sphaeroides} SCOP: c.66.1.11 PDB: 1nw5_A* 1nw6_A* 1nw7_A* 1nw8_A | Back alignment and structure |
|---|
Probab=91.99 E-value=0.19 Score=45.50 Aligned_cols=57 Identities=16% Similarity=0.135 Sum_probs=41.0
Q ss_pred chhhHHHHHHHccccccCCCCCCEEEEEecCCCccHHHHHhhhCCCcEEEEEeCCh---HHHHHHHH
Q 021911 123 PFRSKLAAAVLGGVDNIWIKPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSH---RSGRDLVN 186 (305)
Q Consensus 123 ~~~s~l~a~ll~~l~~~~~~~g~~VLDlG~G~G~~t~~la~~~~~~~~V~avD~s~---~~~~~l~~ 186 (305)
++...|+..++.. ...+++.|||..||+|+++..+... + .+.+++|+++ ..+.-..+
T Consensus 226 ~kp~~l~~~~i~~----~~~~~~~vlDpF~GsGtt~~aa~~~-~--r~~ig~e~~~~~~~~~~~~~~ 285 (319)
T 1eg2_A 226 QKPAAVIERLVRA----LSHPGSTVLDFFAGSGVTARVAIQE-G--RNSICTDAAPVFKEYYQKQLT 285 (319)
T ss_dssp CCCHHHHHHHHHH----HSCTTCEEEETTCTTCHHHHHHHHH-T--CEEEEEESSTHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHH----hCCCCCEEEecCCCCCHHHHHHHHc-C--CcEEEEECCccHHHHHHHHHH
Confidence 3455677776642 3578999999999999888776665 3 4899999999 55443333
|
| >4fs3_A Enoyl-[acyl-carrier-protein] reductase [NADPH] FA; rossmann fold, short chain dehydrogenase, NADPH binding, oxidoreductase; HET: 0WD 0WE; 1.80A {Staphylococcus aureus subsp} PDB: 3gr6_A* 3gns_A* 4all_A* 3gnt_A 4alk_A* 4alj_A* 4ali_A* 4alm_A 4aln_A | Back alignment and structure |
|---|
Probab=91.93 E-value=0.89 Score=39.23 Aligned_cols=80 Identities=14% Similarity=0.159 Sum_probs=54.2
Q ss_pred CCCEEEEEecCCC-ccHHHHHhhhC-CCcEEEEEeCChHHHHHHHHHHHcC--CCeEEEEccCCCCccccc-------CC
Q 021911 143 PGARVLYLGAASG-TTVSHVSDIVG-PNGVVYAVEFSHRSGRDLVNMAKKR--TNVIPIIEDARHPAKYRM-------LV 211 (305)
Q Consensus 143 ~g~~VLDlG~G~G-~~t~~la~~~~-~~~~V~avD~s~~~~~~l~~~a~~~--~nI~~~~~D~~~~~~~~~-------~~ 211 (305)
.++++|--|++++ .....+|+.+- ...+|+.++.+++..+++.+.+++. .++.++++|+++...... ..
T Consensus 5 ~gK~alVTGaa~~~GIG~aiA~~la~~Ga~Vvi~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~ 84 (256)
T 4fs3_A 5 ENKTYVIMGIANKRSIAFGVAKVLDQLGAKLVFTYRKERSRKELEKLLEQLNQPEAHLYQIDVQSDEEVINGFEQIGKDV 84 (256)
T ss_dssp TTCEEEEECCCSTTCHHHHHHHHHHHTTCEEEEEESSGGGHHHHHHHHGGGTCSSCEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCchHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCCcEEEEEccCCCHHHHHHHHHHHHHHh
Confidence 4788999997652 35555554431 2458999999987777766666543 478899999988653211 13
Q ss_pred CcEeEEEEeCC
Q 021911 212 GMVDVIFSDVA 222 (305)
Q Consensus 212 ~~fD~V~~d~~ 222 (305)
+.+|+++.+..
T Consensus 85 G~iD~lvnnAg 95 (256)
T 4fs3_A 85 GNIDGVYHSIA 95 (256)
T ss_dssp CCCSEEEECCC
T ss_pred CCCCEEEeccc
Confidence 58999998754
|
| >1id1_A Putative potassium channel protein; RCK domain, E.coli potassium channel, BK channel, rossmann fold, membrane protein; 2.40A {Escherichia coli} SCOP: c.2.1.9 | Back alignment and structure |
|---|
Probab=91.88 E-value=0.42 Score=37.66 Aligned_cols=99 Identities=8% Similarity=0.011 Sum_probs=62.3
Q ss_pred CEEEEEecCCCccHHHHHhhhC-CCcEEEEEeCCh-HHHHHHHHHHHcCCCeEEEEccCCCCccccc-CCCcEeEEEEeC
Q 021911 145 ARVLYLGAASGTTVSHVSDIVG-PNGVVYAVEFSH-RSGRDLVNMAKKRTNVIPIIEDARHPAKYRM-LVGMVDVIFSDV 221 (305)
Q Consensus 145 ~~VLDlG~G~G~~t~~la~~~~-~~~~V~avD~s~-~~~~~l~~~a~~~~nI~~~~~D~~~~~~~~~-~~~~fD~V~~d~ 221 (305)
.+||=+| .|..+..+++.+. ....|+.+|.++ ...+.+.+.. ...+.++..|+++...... ....+|+|++..
T Consensus 4 ~~vlI~G--~G~vG~~la~~L~~~g~~V~vid~~~~~~~~~~~~~~--~~~~~~i~gd~~~~~~l~~a~i~~ad~vi~~~ 79 (153)
T 1id1_A 4 DHFIVCG--HSILAINTILQLNQRGQNVTVISNLPEDDIKQLEQRL--GDNADVIPGDSNDSSVLKKAGIDRCRAILALS 79 (153)
T ss_dssp SCEEEEC--CSHHHHHHHHHHHHTTCCEEEEECCCHHHHHHHHHHH--CTTCEEEESCTTSHHHHHHHTTTTCSEEEECS
T ss_pred CcEEEEC--CCHHHHHHHHHHHHCCCCEEEEECCChHHHHHHHHhh--cCCCeEEEcCCCCHHHHHHcChhhCCEEEEec
Confidence 4577665 4888888887653 234799999974 3222222221 2468899999987654322 246889999887
Q ss_pred CChhHHHHHHHHHhccCCCCcEEEEEE
Q 021911 222 AQPDQARILALNASYFLKAGGHFVISI 248 (305)
Q Consensus 222 ~~~~~~~~l~~~a~~~LkpGG~lv~s~ 248 (305)
+.......+. ...+.+.|..+++...
T Consensus 80 ~~d~~n~~~~-~~a~~~~~~~~ii~~~ 105 (153)
T 1id1_A 80 DNDADNAFVV-LSAKDMSSDVKTVLAV 105 (153)
T ss_dssp SCHHHHHHHH-HHHHHHTSSSCEEEEC
T ss_pred CChHHHHHHH-HHHHHHCCCCEEEEEE
Confidence 7665554444 5555666666666544
|
| >1wma_A Carbonyl reductase [NADPH] 1; oxidoreductase; HET: AB3 NDP PE5 P33; 1.24A {Homo sapiens} SCOP: c.2.1.2 PDB: 3bhi_A* 3bhj_A* 3bhm_A* 2pfg_A* 1n5d_A* 2hrb_A* | Back alignment and structure |
|---|
Probab=91.55 E-value=0.56 Score=40.13 Aligned_cols=78 Identities=15% Similarity=0.046 Sum_probs=52.4
Q ss_pred CCEEEEEecCCCccHHHHHhhhC--CCcEEEEEeCChHHHHHHHHHHHcC-CCeEEEEccCCCCcccccC-------CCc
Q 021911 144 GARVLYLGAASGTTVSHVSDIVG--PNGVVYAVEFSHRSGRDLVNMAKKR-TNVIPIIEDARHPAKYRML-------VGM 213 (305)
Q Consensus 144 g~~VLDlG~G~G~~t~~la~~~~--~~~~V~avD~s~~~~~~l~~~a~~~-~nI~~~~~D~~~~~~~~~~-------~~~ 213 (305)
+.+||-.| |+|....++++.+- ...+|+.++.++.....+.+..... .++.++.+|+.+....... ...
T Consensus 4 ~k~vlITG-asggIG~~~a~~L~~~~g~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~g~ 82 (276)
T 1wma_A 4 IHVALVTG-GNKGIGLAIVRDLCRLFSGDVVLTARDVTRGQAAVQQLQAEGLSPRFHQLDIDDLQSIRALRDFLRKEYGG 82 (276)
T ss_dssp CCEEEESS-CSSHHHHHHHHHHHHHSSSEEEEEESSHHHHHHHHHHHHHTTCCCEEEECCTTCHHHHHHHHHHHHHHHSS
T ss_pred CCEEEEeC-CCcHHHHHHHHHHHHhcCCeEEEEeCChHHHHHHHHHHHhcCCeeEEEECCCCCHHHHHHHHHHHHHhcCC
Confidence 56777666 55677777776542 2458999999876665555554433 5789999999876432211 137
Q ss_pred EeEEEEeCC
Q 021911 214 VDVIFSDVA 222 (305)
Q Consensus 214 fD~V~~d~~ 222 (305)
+|+||.++.
T Consensus 83 id~li~~Ag 91 (276)
T 1wma_A 83 LDVLVNNAG 91 (276)
T ss_dssp EEEEEECCC
T ss_pred CCEEEECCc
Confidence 999998764
|
| >4eye_A Probable oxidoreductase; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.10A {Mycobacterium abscessus} | Back alignment and structure |
|---|
Probab=91.50 E-value=0.075 Score=48.22 Aligned_cols=98 Identities=21% Similarity=0.226 Sum_probs=59.7
Q ss_pred ccCCCCCCEEEEEec--CCCccHHHHHhhhCCCcEEEEEeCChHHHHHHHHHHHcCCCeEEEEccCCCCcc-c-ccC-CC
Q 021911 138 NIWIKPGARVLYLGA--ASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKRTNVIPIIEDARHPAK-Y-RML-VG 212 (305)
Q Consensus 138 ~~~~~~g~~VLDlG~--G~G~~t~~la~~~~~~~~V~avD~s~~~~~~l~~~a~~~~nI~~~~~D~~~~~~-~-~~~-~~ 212 (305)
...++++++||-+|| +.|..+..+|...+ .+|++++.++...+.+.+ ...-..+..+ .+... . ... ..
T Consensus 154 ~~~~~~g~~VlV~Gasg~iG~~~~~~a~~~G--a~Vi~~~~~~~~~~~~~~----~ga~~v~~~~-~~~~~~v~~~~~~~ 226 (342)
T 4eye_A 154 RGQLRAGETVLVLGAAGGIGTAAIQIAKGMG--AKVIAVVNRTAATEFVKS----VGADIVLPLE-EGWAKAVREATGGA 226 (342)
T ss_dssp TSCCCTTCEEEESSTTSHHHHHHHHHHHHTT--CEEEEEESSGGGHHHHHH----HTCSEEEESS-TTHHHHHHHHTTTS
T ss_pred hcCCCCCCEEEEECCCCHHHHHHHHHHHHcC--CEEEEEeCCHHHHHHHHh----cCCcEEecCc-hhHHHHHHHHhCCC
Confidence 346788999999997 34667778887764 489999998854433222 2111222222 11111 0 011 23
Q ss_pred cEeEEEEeCCChhHHHHHHHHHhccCCCCcEEEEE
Q 021911 213 MVDVIFSDVAQPDQARILALNASYFLKAGGHFVIS 247 (305)
Q Consensus 213 ~fD~V~~d~~~~~~~~~l~~~a~~~LkpGG~lv~s 247 (305)
.+|+||-....+ .+. .+.+.|+++|++++.
T Consensus 227 g~Dvvid~~g~~----~~~-~~~~~l~~~G~iv~~ 256 (342)
T 4eye_A 227 GVDMVVDPIGGP----AFD-DAVRTLASEGRLLVV 256 (342)
T ss_dssp CEEEEEESCC------CHH-HHHHTEEEEEEEEEC
T ss_pred CceEEEECCchh----HHH-HHHHhhcCCCEEEEE
Confidence 799999777654 233 667899999999874
|
| >3pxx_A Carveol dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, NAD, tuberculosis; HET: NAD; 2.00A {Mycobacterium avium} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=91.49 E-value=0.91 Score=39.41 Aligned_cols=105 Identities=15% Similarity=0.108 Sum_probs=63.8
Q ss_pred CCCEEEEEecCCCccHHHHHhhh-CCCcEEEEEeCC------------hHHHHHHHHHHHcC-CCeEEEEccCCCCcccc
Q 021911 143 PGARVLYLGAASGTTVSHVSDIV-GPNGVVYAVEFS------------HRSGRDLVNMAKKR-TNVIPIIEDARHPAKYR 208 (305)
Q Consensus 143 ~g~~VLDlG~G~G~~t~~la~~~-~~~~~V~avD~s------------~~~~~~l~~~a~~~-~nI~~~~~D~~~~~~~~ 208 (305)
.+.+||-.|++. ....++++.+ ....+|+.+|.+ .+.+..+.+..... .++.++.+|+++.....
T Consensus 9 ~gk~vlVTGas~-gIG~~ia~~l~~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~ 87 (287)
T 3pxx_A 9 QDKVVLVTGGAR-GQGRSHAVKLAEEGADIILFDICHDIETNEYPLATSRDLEEAGLEVEKTGRKAYTAEVDVRDRAAVS 87 (287)
T ss_dssp TTCEEEEETTTS-HHHHHHHHHHHHTTCEEEEEECCSCCTTSCSCCCCHHHHHHHHHHHHHTTSCEEEEECCTTCHHHHH
T ss_pred CCCEEEEeCCCC-hHHHHHHHHHHHCCCeEEEEcccccccccccchhhhHHHHHHHHHHHhcCCceEEEEccCCCHHHHH
Confidence 467888888665 5666666544 234589999886 54444444433333 67999999998875322
Q ss_pred cC-------CCcEeEEEEeCCC---------hhHHHH----------HHHHHhccCCCCcEEEEEE
Q 021911 209 ML-------VGMVDVIFSDVAQ---------PDQARI----------LALNASYFLKAGGHFVISI 248 (305)
Q Consensus 209 ~~-------~~~fD~V~~d~~~---------~~~~~~----------l~~~a~~~LkpGG~lv~s~ 248 (305)
.. .+.+|+|+.++.. .+..+. +.+.+...|+.+|.+++..
T Consensus 88 ~~~~~~~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~g~iv~is 153 (287)
T 3pxx_A 88 RELANAVAEFGKLDVVVANAGICPLGAHLPVQAFADAFDVDFVGVINTVHAALPYLTSGASIITTG 153 (287)
T ss_dssp HHHHHHHHHHSCCCEEEECCCCCCCCTTCCTHHHHHHHHHHTHHHHHHHHHHGGGCCTTCEEEEEC
T ss_pred HHHHHHHHHcCCCCEEEECCCcCcccCcCCHHHHHHHhhhhhhhhHHHHHHHHHHhhcCcEEEEec
Confidence 11 1478999987651 111111 2224666778888887764
|
| >4dvj_A Putative zinc-dependent alcohol dehydrogenase Pro; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 1.99A {Rhizobium etli} | Back alignment and structure |
|---|
Probab=91.45 E-value=0.17 Score=46.32 Aligned_cols=94 Identities=18% Similarity=0.231 Sum_probs=56.5
Q ss_pred CCCEEEEEe-cC-CCccHHHHHhhhCCCcEEEEEeCChHHHHHHHHHHHcCCCeEEEEccCCCC-cc-c-ccCCCcEeEE
Q 021911 143 PGARVLYLG-AA-SGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKRTNVIPIIEDARHP-AK-Y-RMLVGMVDVI 217 (305)
Q Consensus 143 ~g~~VLDlG-~G-~G~~t~~la~~~~~~~~V~avD~s~~~~~~l~~~a~~~~nI~~~~~D~~~~-~~-~-~~~~~~fD~V 217 (305)
++++||-+| +| .|..+..+|+.+. ..+|+++|.++.. ++.+++..--..+ |..+. .. . ......+|+|
T Consensus 171 ~g~~VlV~Ga~G~vG~~a~qlak~~~-g~~Vi~~~~~~~~----~~~~~~lGad~vi--~~~~~~~~~v~~~~~~g~Dvv 243 (363)
T 4dvj_A 171 AAPAILIVGGAGGVGSIAVQIARQRT-DLTVIATASRPET----QEWVKSLGAHHVI--DHSKPLAAEVAALGLGAPAFV 243 (363)
T ss_dssp SEEEEEEESTTSHHHHHHHHHHHHHC-CSEEEEECSSHHH----HHHHHHTTCSEEE--CTTSCHHHHHHTTCSCCEEEE
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHhc-CCEEEEEeCCHHH----HHHHHHcCCCEEE--eCCCCHHHHHHHhcCCCceEE
Confidence 789999998 33 3667777787653 3589999999844 3333333111112 22111 10 0 0112479999
Q ss_pred EEeCCChhHHHHHHHHHhccCCCCcEEEEE
Q 021911 218 FSDVAQPDQARILALNASYFLKAGGHFVIS 247 (305)
Q Consensus 218 ~~d~~~~~~~~~l~~~a~~~LkpGG~lv~s 247 (305)
|-....+. .+. .+.++|+++|++++.
T Consensus 244 id~~g~~~---~~~-~~~~~l~~~G~iv~~ 269 (363)
T 4dvj_A 244 FSTTHTDK---HAA-EIADLIAPQGRFCLI 269 (363)
T ss_dssp EECSCHHH---HHH-HHHHHSCTTCEEEEC
T ss_pred EECCCchh---hHH-HHHHHhcCCCEEEEE
Confidence 87655432 333 666899999999875
|
| >2j3h_A NADP-dependent oxidoreductase P1; double bond reductase (AT5G16970), APO form; 2.5A {Arabidopsis thaliana} PDB: 2j3i_A* 2j3j_A* 2j3k_A* | Back alignment and structure |
|---|
Probab=91.35 E-value=0.35 Score=43.54 Aligned_cols=96 Identities=19% Similarity=0.221 Sum_probs=59.5
Q ss_pred cCCCCCCEEEEEec--CCCccHHHHHhhhCCCcEEEEEeCChHHHHHHHHHHH-cCCCeEEEEccCCC---Ccc-cc-cC
Q 021911 139 IWIKPGARVLYLGA--ASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAK-KRTNVIPIIEDARH---PAK-YR-ML 210 (305)
Q Consensus 139 ~~~~~g~~VLDlG~--G~G~~t~~la~~~~~~~~V~avD~s~~~~~~l~~~a~-~~~nI~~~~~D~~~---~~~-~~-~~ 210 (305)
..++++++||-+|| +.|..+..++...+ .+|+++|.++.. ++.++ +...-..+ |..+ ... .. ..
T Consensus 151 ~~~~~g~~vlI~Ga~g~iG~~~~~~a~~~G--~~V~~~~~~~~~----~~~~~~~~g~~~~~--d~~~~~~~~~~~~~~~ 222 (345)
T 2j3h_A 151 CSPKEGETVYVSAASGAVGQLVGQLAKMMG--CYVVGSAGSKEK----VDLLKTKFGFDDAF--NYKEESDLTAALKRCF 222 (345)
T ss_dssp SCCCTTCEEEESSTTSHHHHHHHHHHHHTT--CEEEEEESSHHH----HHHHHHTSCCSEEE--ETTSCSCSHHHHHHHC
T ss_pred hCCCCCCEEEEECCCcHHHHHHHHHHHHCC--CEEEEEeCCHHH----HHHHHHHcCCceEE--ecCCHHHHHHHHHHHh
Confidence 36788999999997 35556666676654 589999999843 33443 22111122 3322 111 00 01
Q ss_pred CCcEeEEEEeCCChhHHHHHHHHHhccCCCCcEEEEE
Q 021911 211 VGMVDVIFSDVAQPDQARILALNASYFLKAGGHFVIS 247 (305)
Q Consensus 211 ~~~fD~V~~d~~~~~~~~~l~~~a~~~LkpGG~lv~s 247 (305)
...+|+||.+...+ .+. .+.+.|+++|++++.
T Consensus 223 ~~~~d~vi~~~g~~----~~~-~~~~~l~~~G~~v~~ 254 (345)
T 2j3h_A 223 PNGIDIYFENVGGK----MLD-AVLVNMNMHGRIAVC 254 (345)
T ss_dssp TTCEEEEEESSCHH----HHH-HHHTTEEEEEEEEEC
T ss_pred CCCCcEEEECCCHH----HHH-HHHHHHhcCCEEEEE
Confidence 24699999776542 444 777899999999874
|
| >2hmt_A YUAA protein; RCK, KTN, KTR, KTRA, ktrab, membrane protein, ION transporter, symporter, transport protein; HET: NAI; 2.20A {Bacillus subtilis} SCOP: c.2.1.9 PDB: 2hms_A* 2hmu_A* 2hmv_A* 2hmw_A* 1lsu_A* | Back alignment and structure |
|---|
Probab=91.24 E-value=0.43 Score=36.55 Aligned_cols=96 Identities=11% Similarity=0.123 Sum_probs=57.5
Q ss_pred CCEEEEEecCCCccHHHHHhhhCC-CcEEEEEeCChHHHHHHHHHHHcCCCeEEEEccCCCCcccccC-CCcEeEEEEeC
Q 021911 144 GARVLYLGAASGTTVSHVSDIVGP-NGVVYAVEFSHRSGRDLVNMAKKRTNVIPIIEDARHPAKYRML-VGMVDVIFSDV 221 (305)
Q Consensus 144 g~~VLDlG~G~G~~t~~la~~~~~-~~~V~avD~s~~~~~~l~~~a~~~~nI~~~~~D~~~~~~~~~~-~~~fD~V~~d~ 221 (305)
..+|+-+|+ |.....+++.+.. ...|+.+|.++.. .+.+++ ....++..|..+....... ...+|+|+...
T Consensus 6 ~~~v~I~G~--G~iG~~~a~~l~~~g~~v~~~d~~~~~----~~~~~~-~~~~~~~~d~~~~~~l~~~~~~~~d~vi~~~ 78 (144)
T 2hmt_A 6 NKQFAVIGL--GRFGGSIVKELHRMGHEVLAVDINEEK----VNAYAS-YATHAVIANATEENELLSLGIRNFEYVIVAI 78 (144)
T ss_dssp CCSEEEECC--SHHHHHHHHHHHHTTCCCEEEESCHHH----HHTTTT-TCSEEEECCTTCHHHHHTTTGGGCSEEEECC
T ss_pred CCcEEEECC--CHHHHHHHHHHHHCCCEEEEEeCCHHH----HHHHHH-hCCEEEEeCCCCHHHHHhcCCCCCCEEEECC
Confidence 356888886 7788888776522 2479999998733 333322 2456677887664332211 35789999888
Q ss_pred CCh-hHHHHHHHHHhccCCCCcEEEEEE
Q 021911 222 AQP-DQARILALNASYFLKAGGHFVISI 248 (305)
Q Consensus 222 ~~~-~~~~~l~~~a~~~LkpGG~lv~s~ 248 (305)
+.+ .....+. .+.+.+.+. .++...
T Consensus 79 ~~~~~~~~~~~-~~~~~~~~~-~ii~~~ 104 (144)
T 2hmt_A 79 GANIQASTLTT-LLLKELDIP-NIWVKA 104 (144)
T ss_dssp CSCHHHHHHHH-HHHHHTTCS-EEEEEC
T ss_pred CCchHHHHHHH-HHHHHcCCC-eEEEEe
Confidence 765 3333333 444556675 655543
|
| >1iz0_A Quinone oxidoreductase; APO-enzyme, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.30A {Thermus thermophilus} SCOP: b.35.1.2 c.2.1.1 PDB: 1iyz_A 2cf2_D | Back alignment and structure |
|---|
Probab=91.12 E-value=0.15 Score=45.14 Aligned_cols=92 Identities=22% Similarity=0.233 Sum_probs=57.7
Q ss_pred CCCCCEEEEEec--CCCccHHHHHhhhCCCcEEEEEeCChHHHHHHHHHHHcCCCeEEEEccCCC-CcccccCCCcEeEE
Q 021911 141 IKPGARVLYLGA--ASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKRTNVIPIIEDARH-PAKYRMLVGMVDVI 217 (305)
Q Consensus 141 ~~~g~~VLDlG~--G~G~~t~~la~~~~~~~~V~avD~s~~~~~~l~~~a~~~~nI~~~~~D~~~-~~~~~~~~~~fD~V 217 (305)
++++++||-+|+ +.|..+..+|...+ .+|+++|.++...+. +++..--..+ |..+ ...... ...+|+|
T Consensus 123 ~~~g~~vlV~Ga~G~vG~~~~~~a~~~G--a~Vi~~~~~~~~~~~----~~~~ga~~~~--~~~~~~~~~~~-~~~~d~v 193 (302)
T 1iz0_A 123 ARPGEKVLVQAAAGALGTAAVQVARAMG--LRVLAAASRPEKLAL----PLALGAEEAA--TYAEVPERAKA-WGGLDLV 193 (302)
T ss_dssp CCTTCEEEESSTTBHHHHHHHHHHHHTT--CEEEEEESSGGGSHH----HHHTTCSEEE--EGGGHHHHHHH-TTSEEEE
T ss_pred CCCCCEEEEECCCcHHHHHHHHHHHHCC--CEEEEEeCCHHHHHH----HHhcCCCEEE--ECCcchhHHHH-hcCceEE
Confidence 788999999997 34667777777754 489999998744332 3322111112 2221 111111 1579999
Q ss_pred EEeCCChhHHHHHHHHHhccCCCCcEEEEE
Q 021911 218 FSDVAQPDQARILALNASYFLKAGGHFVIS 247 (305)
Q Consensus 218 ~~d~~~~~~~~~l~~~a~~~LkpGG~lv~s 247 (305)
|. ...+ .+. .+.+.|+++|+++..
T Consensus 194 id-~g~~----~~~-~~~~~l~~~G~~v~~ 217 (302)
T 1iz0_A 194 LE-VRGK----EVE-ESLGLLAHGGRLVYI 217 (302)
T ss_dssp EE-CSCT----THH-HHHTTEEEEEEEEEC
T ss_pred EE-CCHH----HHH-HHHHhhccCCEEEEE
Confidence 98 6552 344 677899999998874
|
| >3jyn_A Quinone oxidoreductase; rossmann fold, protein-NADPH complex; HET: NDP; 2.01A {Pseudomonas syringae PV} PDB: 3jyl_A* | Back alignment and structure |
|---|
Probab=91.07 E-value=0.22 Score=44.69 Aligned_cols=98 Identities=17% Similarity=0.104 Sum_probs=59.6
Q ss_pred CCCCCCEEEEEec--CCCccHHHHHhhhCCCcEEEEEeCChHHHHHHHHHHHcCCCeEEEEccCCCCcc-c--ccCCCcE
Q 021911 140 WIKPGARVLYLGA--ASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKRTNVIPIIEDARHPAK-Y--RMLVGMV 214 (305)
Q Consensus 140 ~~~~g~~VLDlG~--G~G~~t~~la~~~~~~~~V~avD~s~~~~~~l~~~a~~~~nI~~~~~D~~~~~~-~--~~~~~~f 214 (305)
.++++++||-.|+ +.|..+..++...+ .+|++++.++...+.+ ++...-..+..+-.+... . ......+
T Consensus 137 ~~~~g~~VlV~Ga~g~iG~~~~~~a~~~G--a~Vi~~~~~~~~~~~~----~~~Ga~~~~~~~~~~~~~~~~~~~~~~g~ 210 (325)
T 3jyn_A 137 QVKPGEIILFHAAAGGVGSLACQWAKALG--AKLIGTVSSPEKAAHA----KALGAWETIDYSHEDVAKRVLELTDGKKC 210 (325)
T ss_dssp CCCTTCEEEESSTTSHHHHHHHHHHHHHT--CEEEEEESSHHHHHHH----HHHTCSEEEETTTSCHHHHHHHHTTTCCE
T ss_pred CCCCCCEEEEEcCCcHHHHHHHHHHHHCC--CEEEEEeCCHHHHHHH----HHcCCCEEEeCCCccHHHHHHHHhCCCCc
Confidence 6788999999884 34667777777765 4899999998544333 222111222211111111 0 0112479
Q ss_pred eEEEEeCCChhHHHHHHHHHhccCCCCcEEEEEE
Q 021911 215 DVIFSDVAQPDQARILALNASYFLKAGGHFVISI 248 (305)
Q Consensus 215 D~V~~d~~~~~~~~~l~~~a~~~LkpGG~lv~s~ 248 (305)
|+||...... .+. .+.+.|+++|++++.-
T Consensus 211 Dvvid~~g~~----~~~-~~~~~l~~~G~iv~~g 239 (325)
T 3jyn_A 211 PVVYDGVGQD----TWL-TSLDSVAPRGLVVSFG 239 (325)
T ss_dssp EEEEESSCGG----GHH-HHHTTEEEEEEEEECC
T ss_pred eEEEECCChH----HHH-HHHHHhcCCCEEEEEe
Confidence 9999766642 344 6778999999998863
|
| >2c0c_A Zinc binding alcohol dehydrogenase, domain containing 2; oxidoreductase, quinone oxidoreductase, medium-chain dehydrogenase/reductase; HET: NAP; 1.45A {Homo sapiens} PDB: 2x1h_A* 2x7h_A* 2wek_A* | Back alignment and structure |
|---|
Probab=91.05 E-value=0.48 Score=43.19 Aligned_cols=98 Identities=18% Similarity=0.151 Sum_probs=59.6
Q ss_pred CCCCCCEEEEEec--CCCccHHHHHhhhCCCcEEEEEeCChHHHHHHHHHHHcCCCeEEEEccCCCCcc-c-ccCCCcEe
Q 021911 140 WIKPGARVLYLGA--ASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKRTNVIPIIEDARHPAK-Y-RMLVGMVD 215 (305)
Q Consensus 140 ~~~~g~~VLDlG~--G~G~~t~~la~~~~~~~~V~avD~s~~~~~~l~~~a~~~~nI~~~~~D~~~~~~-~-~~~~~~fD 215 (305)
.++++++||-+|+ +.|..+..+|...+ .+|++++.++... +.+++..--..+..+-.+... . ......+|
T Consensus 160 ~~~~g~~VlV~Ga~G~iG~~~~q~a~~~G--a~Vi~~~~~~~~~----~~~~~~Ga~~~~~~~~~~~~~~~~~~~~~g~D 233 (362)
T 2c0c_A 160 GLSEGKKVLVTAAAGGTGQFAMQLSKKAK--CHVIGTCSSDEKS----AFLKSLGCDRPINYKTEPVGTVLKQEYPEGVD 233 (362)
T ss_dssp CCCTTCEEEETTTTBTTHHHHHHHHHHTT--CEEEEEESSHHHH----HHHHHTTCSEEEETTTSCHHHHHHHHCTTCEE
T ss_pred CCCCCCEEEEeCCCcHHHHHHHHHHHhCC--CEEEEEECCHHHH----HHHHHcCCcEEEecCChhHHHHHHHhcCCCCC
Confidence 5788999999983 45667777777754 4899999997433 333332111222211111111 0 01124699
Q ss_pred EEEEeCCChhHHHHHHHHHhccCCCCcEEEEEE
Q 021911 216 VIFSDVAQPDQARILALNASYFLKAGGHFVISI 248 (305)
Q Consensus 216 ~V~~d~~~~~~~~~l~~~a~~~LkpGG~lv~s~ 248 (305)
+||..... ..+. .+.+.|+++|++++.-
T Consensus 234 ~vid~~g~----~~~~-~~~~~l~~~G~iv~~g 261 (362)
T 2c0c_A 234 VVYESVGG----AMFD-LAVDALATKGRLIVIG 261 (362)
T ss_dssp EEEECSCT----HHHH-HHHHHEEEEEEEEECC
T ss_pred EEEECCCH----HHHH-HHHHHHhcCCEEEEEe
Confidence 99977664 2344 6778999999988753
|
| >2dq4_A L-threonine 3-dehydrogenase; NAD-dependent, oxidoreductase, structural genomics, NPPSFA; HET: MES; 2.50A {Thermus thermophilus} PDB: 2ejv_A* | Back alignment and structure |
|---|
Probab=91.00 E-value=0.24 Score=44.71 Aligned_cols=96 Identities=18% Similarity=0.196 Sum_probs=57.5
Q ss_pred cCCCCCCEEEEEecCC-CccHHHHHhhhCCCcEEEEEeCChHHHHHHHHHHHcCCCeEEEEccCCCCc--c-cc-cCCCc
Q 021911 139 IWIKPGARVLYLGAAS-GTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKRTNVIPIIEDARHPA--K-YR-MLVGM 213 (305)
Q Consensus 139 ~~~~~g~~VLDlG~G~-G~~t~~la~~~~~~~~V~avD~s~~~~~~l~~~a~~~~nI~~~~~D~~~~~--~-~~-~~~~~ 213 (305)
..+ ++++||-+|+|. |..+..+|+..+ ..+|+++|.++.. ++.+++. ... ..|..+.. . .. .....
T Consensus 161 ~~~-~g~~VlV~GaG~vG~~~~q~a~~~G-a~~Vi~~~~~~~~----~~~~~~l--a~~-v~~~~~~~~~~~~~~~~~~g 231 (343)
T 2dq4_A 161 SGV-SGKSVLITGAGPIGLMAAMVVRASG-AGPILVSDPNPYR----LAFARPY--ADR-LVNPLEEDLLEVVRRVTGSG 231 (343)
T ss_dssp TCC-TTSCEEEECCSHHHHHHHHHHHHTT-CCSEEEECSCHHH----HGGGTTT--CSE-EECTTTSCHHHHHHHHHSSC
T ss_pred CCC-CCCEEEEECCCHHHHHHHHHHHHcC-CCEEEEECCCHHH----HHHHHHh--HHh-ccCcCccCHHHHHHHhcCCC
Confidence 356 899999999843 556667777654 1279999999833 3333332 111 12322211 0 00 01246
Q ss_pred EeEEEEeCCChhHHHHHHHHHhccCCCCcEEEEE
Q 021911 214 VDVIFSDVAQPDQARILALNASYFLKAGGHFVIS 247 (305)
Q Consensus 214 fD~V~~d~~~~~~~~~l~~~a~~~LkpGG~lv~s 247 (305)
+|+||-....+.. +. .+.+.|+++|++++.
T Consensus 232 ~D~vid~~g~~~~---~~-~~~~~l~~~G~iv~~ 261 (343)
T 2dq4_A 232 VEVLLEFSGNEAA---IH-QGLMALIPGGEARIL 261 (343)
T ss_dssp EEEEEECSCCHHH---HH-HHHHHEEEEEEEEEC
T ss_pred CCEEEECCCCHHH---HH-HHHHHHhcCCEEEEE
Confidence 9999977765432 33 566799999998874
|
| >2b5w_A Glucose dehydrogenase; nucleotide binding motif, oxidoreductase; HET: FLC NAP; 1.60A {Haloferax mediterranei} PDB: 2b5v_A* 2vwg_A* 2vwh_A* 2vwp_A* 2vwq_A* | Back alignment and structure |
|---|
Probab=90.85 E-value=0.29 Score=44.51 Aligned_cols=98 Identities=15% Similarity=0.225 Sum_probs=57.9
Q ss_pred cCCCCC------CEEEEEecCC-CccH-HHHH-hhhCCCcEEEEEeCChH---HHHHHHHHHHcCCCeEEEEccCCCCcc
Q 021911 139 IWIKPG------ARVLYLGAAS-GTTV-SHVS-DIVGPNGVVYAVEFSHR---SGRDLVNMAKKRTNVIPIIEDARHPAK 206 (305)
Q Consensus 139 ~~~~~g------~~VLDlG~G~-G~~t-~~la-~~~~~~~~V~avD~s~~---~~~~l~~~a~~~~nI~~~~~D~~~~~~ 206 (305)
..++++ ++||-+|+|+ |..+ ..+| +..+ ..+|+++|.++. . ++.+++. ....+ |..+.+.
T Consensus 162 ~~~~~g~~~~~~~~VlV~GaG~vG~~a~iqla~k~~G-a~~Vi~~~~~~~~~~~----~~~~~~l-Ga~~v--~~~~~~~ 233 (357)
T 2b5w_A 162 AYASRSAFDWDPSSAFVLGNGSLGLLTLAMLKVDDKG-YENLYCLGRRDRPDPT----IDIIEEL-DATYV--DSRQTPV 233 (357)
T ss_dssp HHHTTTTSCCCCCEEEEECCSHHHHHHHHHHHHCTTC-CCEEEEEECCCSSCHH----HHHHHHT-TCEEE--ETTTSCG
T ss_pred cCCCCCcccCCCCEEEEECCCHHHHHHHHHHHHHHcC-CcEEEEEeCCcccHHH----HHHHHHc-CCccc--CCCccCH
Confidence 356788 9999999842 4455 5666 5543 224999999874 3 2333332 23333 4332111
Q ss_pred --cccCCCcEeEEEEeCCChhHHHHHHHHHhccCCCCcEEEEEE
Q 021911 207 --YRMLVGMVDVIFSDVAQPDQARILALNASYFLKAGGHFVISI 248 (305)
Q Consensus 207 --~~~~~~~fD~V~~d~~~~~~~~~l~~~a~~~LkpGG~lv~s~ 248 (305)
.....+.||+||-....+. .+. .+.++|+++|++++.-
T Consensus 234 ~~i~~~~gg~Dvvid~~g~~~---~~~-~~~~~l~~~G~iv~~g 273 (357)
T 2b5w_A 234 EDVPDVYEQMDFIYEATGFPK---HAI-QSVQALAPNGVGALLG 273 (357)
T ss_dssp GGHHHHSCCEEEEEECSCCHH---HHH-HHHHHEEEEEEEEECC
T ss_pred HHHHHhCCCCCEEEECCCChH---HHH-HHHHHHhcCCEEEEEe
Confidence 1001237999997666542 233 6668999999998753
|
| >3oig_A Enoyl-[acyl-carrier-protein] reductase [NADH]; fatty acid synthesis, rossmann-like fold, enoyl-ACP reductas binding; HET: NAD IMJ; 1.25A {Bacillus subtilis} SCOP: c.2.1.2 PDB: 3oif_A* 2qio_A* 3oje_A 3ojf_A* | Back alignment and structure |
|---|
Probab=90.78 E-value=1.8 Score=37.10 Aligned_cols=106 Identities=16% Similarity=0.180 Sum_probs=64.2
Q ss_pred CCCEEEEEecCCC-ccHHHHHhhh-CCCcEEEEEeCChHHHHHHHHHHHcC--CCeEEEEccCCCCcccccC-------C
Q 021911 143 PGARVLYLGAASG-TTVSHVSDIV-GPNGVVYAVEFSHRSGRDLVNMAKKR--TNVIPIIEDARHPAKYRML-------V 211 (305)
Q Consensus 143 ~g~~VLDlG~G~G-~~t~~la~~~-~~~~~V~avD~s~~~~~~l~~~a~~~--~nI~~~~~D~~~~~~~~~~-------~ 211 (305)
.+.+||-.|++.+ ....++++.+ ....+|+.++.+++....+.+...+. .++.++.+|+++....... .
T Consensus 6 ~~k~vlVTGasg~~GIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~ 85 (266)
T 3oig_A 6 EGRNIVVMGVANKRSIAWGIARSLHEAGARLIFTYAGERLEKSVHELAGTLDRNDSIILPCDVTNDAEIETCFASIKEQV 85 (266)
T ss_dssp TTCEEEEECCCSTTSHHHHHHHHHHHTTCEEEEEESSGGGHHHHHHHHHTSSSCCCEEEECCCSSSHHHHHHHHHHHHHH
T ss_pred CCCEEEEEcCCCCCcHHHHHHHHHHHCCCEEEEecCchHHHHHHHHHHHhcCCCCceEEeCCCCCHHHHHHHHHHHHHHh
Confidence 3678999987632 3555555443 22458999988864444444444433 3799999999887543211 1
Q ss_pred CcEeEEEEeCCC--------------hhHHH-----------HHHHHHhccCCCCcEEEEEE
Q 021911 212 GMVDVIFSDVAQ--------------PDQAR-----------ILALNASYFLKAGGHFVISI 248 (305)
Q Consensus 212 ~~fD~V~~d~~~--------------~~~~~-----------~l~~~a~~~LkpGG~lv~s~ 248 (305)
..+|+|+.++.. .+... .+.+.+...|+++|.+++..
T Consensus 86 g~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~g~iv~is 147 (266)
T 3oig_A 86 GVIHGIAHCIAFANKEELVGEYLNTNRDGFLLAHNISSYSLTAVVKAARPMMTEGGSIVTLT 147 (266)
T ss_dssp SCCCEEEECCCCCCGGGGSSCGGGCCHHHHHHHHHHHTHHHHHHHHHHGGGCTTCEEEEEEE
T ss_pred CCeeEEEEccccccccccccchhhccHHHHHHHHHHhHHHHHHHHHHHHhhcCCCceEEEEe
Confidence 478999986541 11111 12225667788888888765
|
| >3qwb_A Probable quinone oxidoreductase; rossmann fold, quinone oxidoreductases, NADPH, cytoplasm and oxidoreductase; HET: NDP; 1.59A {Saccharomyces cerevisiae} PDB: 3qwa_A* | Back alignment and structure |
|---|
Probab=90.65 E-value=0.32 Score=43.70 Aligned_cols=97 Identities=22% Similarity=0.179 Sum_probs=59.2
Q ss_pred CCCCCCEEEEEec--CCCccHHHHHhhhCCCcEEEEEeCChHHHHHHHHHHHcCCCeEEEEccCCCCcc-c--ccCCCcE
Q 021911 140 WIKPGARVLYLGA--ASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKRTNVIPIIEDARHPAK-Y--RMLVGMV 214 (305)
Q Consensus 140 ~~~~g~~VLDlG~--G~G~~t~~la~~~~~~~~V~avD~s~~~~~~l~~~a~~~~nI~~~~~D~~~~~~-~--~~~~~~f 214 (305)
.++++++||-+|+ +.|..+..++...+ .+|++++.++... +.+++...-..+..+-.+... . ......+
T Consensus 145 ~~~~g~~vlV~Ga~g~iG~~~~~~a~~~G--a~Vi~~~~~~~~~----~~~~~~ga~~~~~~~~~~~~~~~~~~~~~~g~ 218 (334)
T 3qwb_A 145 HVKKGDYVLLFAAAGGVGLILNQLLKMKG--AHTIAVASTDEKL----KIAKEYGAEYLINASKEDILRQVLKFTNGKGV 218 (334)
T ss_dssp CCCTTCEEEESSTTBHHHHHHHHHHHHTT--CEEEEEESSHHHH----HHHHHTTCSEEEETTTSCHHHHHHHHTTTSCE
T ss_pred cCCCCCEEEEECCCCHHHHHHHHHHHHCC--CEEEEEeCCHHHH----HHHHHcCCcEEEeCCCchHHHHHHHHhCCCCc
Confidence 6788999999985 34566777777754 5899999988443 333333211222221111111 0 0012479
Q ss_pred eEEEEeCCChhHHHHHHHHHhccCCCCcEEEEE
Q 021911 215 DVIFSDVAQPDQARILALNASYFLKAGGHFVIS 247 (305)
Q Consensus 215 D~V~~d~~~~~~~~~l~~~a~~~LkpGG~lv~s 247 (305)
|+||.+.... .+. .+.++|+++|++++.
T Consensus 219 D~vid~~g~~----~~~-~~~~~l~~~G~iv~~ 246 (334)
T 3qwb_A 219 DASFDSVGKD----TFE-ISLAALKRKGVFVSF 246 (334)
T ss_dssp EEEEECCGGG----GHH-HHHHHEEEEEEEEEC
T ss_pred eEEEECCChH----HHH-HHHHHhccCCEEEEE
Confidence 9999776642 333 666799999999885
|
| >1rjd_A PPM1P, carboxy methyl transferase for protein phosphatase 2A catalytic subunit; SAM dependent methyltransferase; HET: SAM; 1.80A {Saccharomyces cerevisiae} SCOP: c.66.1.37 PDB: 1rje_A* 1rjf_A 1rjg_A* 2ob2_A* 2ob1_A | Back alignment and structure |
|---|
Probab=90.54 E-value=9.1 Score=34.48 Aligned_cols=104 Identities=10% Similarity=0.126 Sum_probs=64.2
Q ss_pred CCCCEEEEEecCCCccHHHHHhhhCCCcEEEEEeCChHHHHHHHHHHHc-----------------------CCCeEEEE
Q 021911 142 KPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKK-----------------------RTNVIPII 198 (305)
Q Consensus 142 ~~g~~VLDlG~G~G~~t~~la~~~~~~~~V~avD~s~~~~~~l~~~a~~-----------------------~~nI~~~~ 198 (305)
.+...|+.||||.-+....+.... +...++-||+ |..+..-.+...+ ..+..++-
T Consensus 96 ~~~~qVV~LGaGlDTr~~RL~~~~-~~~~~~EvD~-P~vi~~K~~~l~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~v~ 173 (334)
T 1rjd_A 96 NEKVQVVNLGCGSDLRMLPLLQMF-PHLAYVDIDY-NESVELKNSILRESEILRISLGLSKEDTAKSPFLIDQGRYKLAA 173 (334)
T ss_dssp CSSEEEEEETCTTCCTHHHHHHHC-TTEEEEEEEC-HHHHHHHHHHHHHSHHHHHHHTCCSSCCCCTTEEEECSSEEEEE
T ss_pred CCCcEEEEeCCCCccHHHHhcCcC-CCCEEEECCC-HHHHHHHHHHhhhccchhhhcccccccccccccccCCCceEEEe
Confidence 456899999999999999988763 3557777777 4333222222221 25788999
Q ss_pred ccCCCCccc----cc--CCCcEeEEEEeCC----ChhHHHHHHHHHhccCCCCcEEEEEE
Q 021911 199 EDARHPAKY----RM--LVGMVDVIFSDVA----QPDQARILALNASYFLKAGGHFVISI 248 (305)
Q Consensus 199 ~D~~~~~~~----~~--~~~~fD~V~~d~~----~~~~~~~l~~~a~~~LkpGG~lv~s~ 248 (305)
+|+++.... .. ......++++... .+++...+...+...+ |+|.+++..
T Consensus 174 ~DL~d~~w~~~ll~~~~d~~~Ptl~iaEgvL~YL~~~~~~~ll~~ia~~~-~~~~~v~~e 232 (334)
T 1rjd_A 174 CDLNDITETTRLLDVCTKREIPTIVISECLLCYMHNNESQLLINTIMSKF-SHGLWISYD 232 (334)
T ss_dssp CCTTCHHHHHHHHHTTCCTTSCEEEEEESCGGGSCHHHHHHHHHHHHHHC-SSEEEEEEE
T ss_pred cCCCCcHHHHHHHHhcCCCCCCEEEEEcchhhCCCHHHHHHHHHHHHhhC-CCcEEEEEe
Confidence 999885321 11 1235667777554 4555554443666655 677775443
|
| >1xa0_A Putative NADPH dependent oxidoreductases; structural genomics, protein structure initiative, MCSG; HET: DTY; 2.80A {Geobacillus stearothermophilus} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=90.30 E-value=0.32 Score=43.53 Aligned_cols=95 Identities=16% Similarity=0.062 Sum_probs=56.3
Q ss_pred CCCCCC-EEEEEec--CCCccHHHHHhhhCCCcEEEEEeCChHHHHHHHHHHHcCCCeEEEEccCCCC--cc-cccCCCc
Q 021911 140 WIKPGA-RVLYLGA--ASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKRTNVIPIIEDARHP--AK-YRMLVGM 213 (305)
Q Consensus 140 ~~~~g~-~VLDlG~--G~G~~t~~la~~~~~~~~V~avD~s~~~~~~l~~~a~~~~nI~~~~~D~~~~--~~-~~~~~~~ 213 (305)
.+++++ +||-+|+ +.|..+..+|+..+ .+|++++.++...+. +++..--..+ |..+. .. .......
T Consensus 145 ~~~~g~~~VlV~Ga~G~vG~~~~q~a~~~G--a~vi~~~~~~~~~~~----~~~lGa~~~i--~~~~~~~~~~~~~~~~~ 216 (328)
T 1xa0_A 145 GLTPERGPVLVTGATGGVGSLAVSMLAKRG--YTVEASTGKAAEHDY----LRVLGAKEVL--AREDVMAERIRPLDKQR 216 (328)
T ss_dssp TCCGGGCCEEESSTTSHHHHHHHHHHHHTT--CCEEEEESCTTCHHH----HHHTTCSEEE--ECC---------CCSCC
T ss_pred CCCCCCceEEEecCCCHHHHHHHHHHHHCC--CEEEEEECCHHHHHH----HHHcCCcEEE--ecCCcHHHHHHHhcCCc
Confidence 567775 8999997 45667778887764 479999998743332 3322111111 11111 00 0011247
Q ss_pred EeEEEEeCCChhHHHHHHHHHhccCCCCcEEEEE
Q 021911 214 VDVIFSDVAQPDQARILALNASYFLKAGGHFVIS 247 (305)
Q Consensus 214 fD~V~~d~~~~~~~~~l~~~a~~~LkpGG~lv~s 247 (305)
+|+||-....+. +. .+.+.|+++|++++.
T Consensus 217 ~d~vid~~g~~~----~~-~~~~~l~~~G~~v~~ 245 (328)
T 1xa0_A 217 WAAAVDPVGGRT----LA-TVLSRMRYGGAVAVS 245 (328)
T ss_dssp EEEEEECSTTTT----HH-HHHHTEEEEEEEEEC
T ss_pred ccEEEECCcHHH----HH-HHHHhhccCCEEEEE
Confidence 999997666532 33 666799999999875
|
| >1lnq_A MTHK channels, potassium channel related protein; rossman fold, helix bundle, membrane protein; 3.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: c.2.1.9 d.286.1.1 f.14.1.1 PDB: 3rbz_A | Back alignment and structure |
|---|
Probab=90.29 E-value=0.92 Score=40.72 Aligned_cols=96 Identities=7% Similarity=-0.006 Sum_probs=64.5
Q ss_pred CCEEEEEecCCCccHHHHHhhhCCCcEEEEEeCChHHHHHHHHHHHcCCCeEEEEccCCCCccccc-CCCcEeEEEEeCC
Q 021911 144 GARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKRTNVIPIIEDARHPAKYRM-LVGMVDVIFSDVA 222 (305)
Q Consensus 144 g~~VLDlG~G~G~~t~~la~~~~~~~~V~avD~s~~~~~~l~~~a~~~~nI~~~~~D~~~~~~~~~-~~~~fD~V~~d~~ 222 (305)
..+|+=+|+ |..+..+++.+...+.|+.+|.++..++ ++. .++.++++|+++...... ....+|.|++..+
T Consensus 115 ~~~viI~G~--G~~g~~l~~~L~~~g~v~vid~~~~~~~-----~~~-~~~~~i~gd~~~~~~L~~a~i~~a~~vi~~~~ 186 (336)
T 1lnq_A 115 SRHVVICGW--SESTLECLRELRGSEVFVLAEDENVRKK-----VLR-SGANFVHGDPTRVSDLEKANVRGARAVIVDLE 186 (336)
T ss_dssp -CEEEEESC--CHHHHHHHTTGGGSCEEEEESCGGGHHH-----HHH-TTCEEEESCTTSHHHHHHTCSTTEEEEEECCS
T ss_pred cCCEEEECC--cHHHHHHHHHHHhCCcEEEEeCChhhhh-----HHh-CCcEEEEeCCCCHHHHHhcChhhccEEEEcCC
Confidence 346777664 8899999987744334889999985433 222 478899999988764422 2568999998776
Q ss_pred ChhHHHHHHHHHhccCCCCcEEEEEE
Q 021911 223 QPDQARILALNASYFLKAGGHFVISI 248 (305)
Q Consensus 223 ~~~~~~~l~~~a~~~LkpGG~lv~s~ 248 (305)
......... ...+.+.|.-+++...
T Consensus 187 ~d~~n~~~~-~~ar~~~~~~~iiar~ 211 (336)
T 1lnq_A 187 SDSETIHCI-LGIRKIDESVRIIAEA 211 (336)
T ss_dssp SHHHHHHHH-HHHHTTCTTSEEEEEC
T ss_pred ccHHHHHHH-HHHHHHCCCCeEEEEE
Confidence 554333333 5666778876766654
|
| >3iht_A S-adenosyl-L-methionine methyl transferase; YP_165822.1, STR genomics, joint center for structural genomics, JCSG; HET: MSE SAM; 1.80A {Ruegeria pomeroyi dss-3} | Back alignment and structure |
|---|
Probab=90.27 E-value=0.19 Score=40.53 Aligned_cols=99 Identities=22% Similarity=0.260 Sum_probs=62.2
Q ss_pred CCEEEEEecCCCccHHHHHhhhCCCcEEEEEeCChHHHHHHHHHHHcCCCeEEEEccCCCCcccc--cCCCcEeEEEEeC
Q 021911 144 GARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKRTNVIPIIEDARHPAKYR--MLVGMVDVIFSDV 221 (305)
Q Consensus 144 g~~VLDlG~G~G~~t~~la~~~~~~~~V~avD~s~~~~~~l~~~a~~~~nI~~~~~D~~~~~~~~--~~~~~fD~V~~d~ 221 (305)
..-|||+|-|+|.+-.||.+.+ |...|+++|-.-..--+ ...+.-.+++.|+.+..+.. ......-++.+|.
T Consensus 41 ~GpVlElGLGNGRTydHLRe~~-P~R~I~vfDR~~~~hp~-----~~P~~e~~ilGdi~~tL~~~~~r~g~~a~LaHaD~ 114 (174)
T 3iht_A 41 SGPVYELGLGNGRTYHHLRQHV-QGREIYVFERAVASHPD-----STPPEAQLILGDIRETLPATLERFGATASLVHADL 114 (174)
T ss_dssp CSCEEEECCTTCHHHHHHHHHC-CSSCEEEEESSCCCCGG-----GCCCGGGEEESCHHHHHHHHHHHHCSCEEEEEECC
T ss_pred CCceEEecCCCChhHHHHHHhC-CCCcEEEEEeeeccCCC-----CCCchHheecccHHHHHHHHHHhcCCceEEEEeec
Confidence 4679999999999999999998 67799999953100000 00123346777775543221 1234556666666
Q ss_pred CChh------HHHHHHHHHhccCCCCcEEEEEE
Q 021911 222 AQPD------QARILALNASYFLKAGGHFVISI 248 (305)
Q Consensus 222 ~~~~------~~~~l~~~a~~~LkpGG~lv~s~ 248 (305)
-..+ ....+..-+..+|.|||.++-..
T Consensus 115 G~g~~~~d~a~a~~lsplI~~~la~GGi~vS~~ 147 (174)
T 3iht_A 115 GGHNREKNDRFARLISPLIEPHLAQGGLMVSSD 147 (174)
T ss_dssp CCSCHHHHHHHHHHHHHHHGGGEEEEEEEEESS
T ss_pred CCCCcchhHHHHHhhhHHHHHHhcCCcEEEeCC
Confidence 6321 23334445778999999887664
|
| >3k31_A Enoyl-(acyl-carrier-protein) reductase; ssgcid, NIH, niaid, SBRI, UW, decode, eonyl-(acyl-carrier-PR reductase, NAD, oxidoreductase; HET: NAD; 1.80A {Anaplasma phagocytophilum} PDB: 3k2e_A* | Back alignment and structure |
|---|
Probab=90.22 E-value=1.2 Score=39.13 Aligned_cols=80 Identities=15% Similarity=0.170 Sum_probs=52.1
Q ss_pred CCCEEEEEecCC-CccHHHHHhhh-CCCcEEEEEeCChHHHHHHHHHHHcCCCeEEEEccCCCCcccccC-------CCc
Q 021911 143 PGARVLYLGAAS-GTTVSHVSDIV-GPNGVVYAVEFSHRSGRDLVNMAKKRTNVIPIIEDARHPAKYRML-------VGM 213 (305)
Q Consensus 143 ~g~~VLDlG~G~-G~~t~~la~~~-~~~~~V~avD~s~~~~~~l~~~a~~~~nI~~~~~D~~~~~~~~~~-------~~~ 213 (305)
.+.+||-.|++. .....++++.+ ....+|+.++.++.....+.+.......+.++.+|+++....... ...
T Consensus 29 ~~k~vlVTGasg~~GIG~~ia~~la~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~g~ 108 (296)
T 3k31_A 29 EGKKGVIIGVANDKSLAWGIAKAVCAQGAEVALTYLSETFKKRVDPLAESLGVKLTVPCDVSDAESVDNMFKVLAEEWGS 108 (296)
T ss_dssp TTCEEEEECCCSTTSHHHHHHHHHHHTTCEEEEEESSGGGHHHHHHHHHHHTCCEEEECCTTCHHHHHHHHHHHHHHHSC
T ss_pred CCCEEEEEeCCCCCCHHHHHHHHHHHCCCEEEEEeCChHHHHHHHHHHHhcCCeEEEEcCCCCHHHHHHHHHHHHHHcCC
Confidence 467899999764 35666666544 234589999998754444444444445678999999887532211 147
Q ss_pred EeEEEEeCC
Q 021911 214 VDVIFSDVA 222 (305)
Q Consensus 214 fD~V~~d~~ 222 (305)
+|+++.++.
T Consensus 109 iD~lVnnAG 117 (296)
T 3k31_A 109 LDFVVHAVA 117 (296)
T ss_dssp CSEEEECCC
T ss_pred CCEEEECCC
Confidence 899998764
|
| >3tjr_A Short chain dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, SCD, NAD; HET: UNL; 1.60A {Mycobacterium avium subsp} | Back alignment and structure |
|---|
Probab=90.22 E-value=0.63 Score=41.17 Aligned_cols=79 Identities=20% Similarity=0.226 Sum_probs=54.7
Q ss_pred CCCEEEEEecCCCccHHHHHhhh-CCCcEEEEEeCChHHHHHHHHHHHcC-CCeEEEEccCCCCcccccC-------CCc
Q 021911 143 PGARVLYLGAASGTTVSHVSDIV-GPNGVVYAVEFSHRSGRDLVNMAKKR-TNVIPIIEDARHPAKYRML-------VGM 213 (305)
Q Consensus 143 ~g~~VLDlG~G~G~~t~~la~~~-~~~~~V~avD~s~~~~~~l~~~a~~~-~nI~~~~~D~~~~~~~~~~-------~~~ 213 (305)
.+.+||-.|+.. ....++++.+ ....+|+.++.++..+.++.+..... .++.++.+|+++....... ...
T Consensus 30 ~gk~vlVTGas~-gIG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~g~ 108 (301)
T 3tjr_A 30 DGRAAVVTGGAS-GIGLATATEFARRGARLVLSDVDQPALEQAVNGLRGQGFDAHGVVCDVRHLDEMVRLADEAFRLLGG 108 (301)
T ss_dssp TTCEEEEETTTS-HHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHHHHSS
T ss_pred CCCEEEEeCCCC-HHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCceEEEEccCCCHHHHHHHHHHHHHhCCC
Confidence 467888888764 5666666554 23458999999987776666655543 5799999999887532211 147
Q ss_pred EeEEEEeCC
Q 021911 214 VDVIFSDVA 222 (305)
Q Consensus 214 fD~V~~d~~ 222 (305)
+|+||.++.
T Consensus 109 id~lvnnAg 117 (301)
T 3tjr_A 109 VDVVFSNAG 117 (301)
T ss_dssp CSEEEECCC
T ss_pred CCEEEECCC
Confidence 899998765
|
| >4eso_A Putative oxidoreductase; NADP, structural genomics, PSI-biology, NEW structural genomics research consortium, nysgrc; HET: MSE NAP; 1.91A {Sinorhizobium meliloti} PDB: 3vc7_A | Back alignment and structure |
|---|
Probab=90.17 E-value=0.82 Score=39.32 Aligned_cols=103 Identities=11% Similarity=0.139 Sum_probs=64.4
Q ss_pred CCCEEEEEecCCCccHHHHHhhh-CCCcEEEEEeCChHHHHHHHHHHHcCCCeEEEEccCCCCccccc-------CCCcE
Q 021911 143 PGARVLYLGAASGTTVSHVSDIV-GPNGVVYAVEFSHRSGRDLVNMAKKRTNVIPIIEDARHPAKYRM-------LVGMV 214 (305)
Q Consensus 143 ~g~~VLDlG~G~G~~t~~la~~~-~~~~~V~avD~s~~~~~~l~~~a~~~~nI~~~~~D~~~~~~~~~-------~~~~f 214 (305)
.+++||-.|++. ....++++.+ ....+|+.++.++..++++.+... .++.++.+|+++...... ....+
T Consensus 7 ~gk~~lVTGas~-gIG~a~a~~l~~~G~~V~~~~r~~~~~~~~~~~~~--~~~~~~~~Dv~~~~~v~~~~~~~~~~~g~i 83 (255)
T 4eso_A 7 QGKKAIVIGGTH-GMGLATVRRLVEGGAEVLLTGRNESNIARIREEFG--PRVHALRSDIADLNEIAVLGAAAGQTLGAI 83 (255)
T ss_dssp TTCEEEEETCSS-HHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHG--GGEEEEECCTTCHHHHHHHHHHHHHHHSSE
T ss_pred CCCEEEEECCCC-HHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhC--CcceEEEccCCCHHHHHHHHHHHHHHhCCC
Confidence 467888888654 5666666554 234589999999866555544432 478999999988753211 12479
Q ss_pred eEEEEeCCC----------hh-HHHH----------HHHHHhccCCCCcEEEEEE
Q 021911 215 DVIFSDVAQ----------PD-QARI----------LALNASYFLKAGGHFVISI 248 (305)
Q Consensus 215 D~V~~d~~~----------~~-~~~~----------l~~~a~~~LkpGG~lv~s~ 248 (305)
|+++.++.. ++ ..+. +.+.+...++++|.+++..
T Consensus 84 d~lv~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~g~iv~is 138 (255)
T 4eso_A 84 DLLHINAGVSELEPFDQVSEASYDRQFAVNTKGAFFTVQRLTPLIREGGSIVFTS 138 (255)
T ss_dssp EEEEECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHGGGEEEEEEEEEEC
T ss_pred CEEEECCCCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHhcCCEEEEEC
Confidence 999987641 11 1111 2224556677788887764
|
| >3ijr_A Oxidoreductase, short chain dehydrogenase/reducta; structural genomics, infectious D center for structural genomics of infectious diseases; HET: NAD; 2.05A {Bacillus anthracis str} PDB: 3i3o_A* | Back alignment and structure |
|---|
Probab=90.16 E-value=1.2 Score=39.05 Aligned_cols=104 Identities=16% Similarity=0.222 Sum_probs=62.7
Q ss_pred CCCEEEEEecCCCccHHHHHhhhC-CCcEEEEEeCChHHH-HHHHHHHHcC-CCeEEEEccCCCCcccccC-------CC
Q 021911 143 PGARVLYLGAASGTTVSHVSDIVG-PNGVVYAVEFSHRSG-RDLVNMAKKR-TNVIPIIEDARHPAKYRML-------VG 212 (305)
Q Consensus 143 ~g~~VLDlG~G~G~~t~~la~~~~-~~~~V~avD~s~~~~-~~l~~~a~~~-~nI~~~~~D~~~~~~~~~~-------~~ 212 (305)
.+.+||-.|++. ....++++.+- ...+|+.++.++... ..+.+..+.. .++.++.+|+.+....... .+
T Consensus 46 ~gk~vlVTGas~-GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~g 124 (291)
T 3ijr_A 46 KGKNVLITGGDS-GIGRAVSIAFAKEGANIAIAYLDEEGDANETKQYVEKEGVKCVLLPGDLSDEQHCKDIVQETVRQLG 124 (291)
T ss_dssp TTCEEEEETTTS-HHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHTTTCCEEEEESCTTSHHHHHHHHHHHHHHHS
T ss_pred CCCEEEEeCCCc-HHHHHHHHHHHHCCCEEEEEeCCchHHHHHHHHHHHhcCCcEEEEECCCCCHHHHHHHHHHHHHHcC
Confidence 367888888654 56666665542 345899999876432 2233333332 5789999999886532111 24
Q ss_pred cEeEEEEeCCC-----------hh------------HHHHHHHHHhccCCCCcEEEEEE
Q 021911 213 MVDVIFSDVAQ-----------PD------------QARILALNASYFLKAGGHFVISI 248 (305)
Q Consensus 213 ~fD~V~~d~~~-----------~~------------~~~~l~~~a~~~LkpGG~lv~s~ 248 (305)
.+|+++.++.. .+ ...++. .+...|+.+|.+++..
T Consensus 125 ~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~-~~~~~~~~~g~iv~is 182 (291)
T 3ijr_A 125 SLNILVNNVAQQYPQQGLEYITAEQLEKTFRINIFSYFHVTK-AALSHLKQGDVIINTA 182 (291)
T ss_dssp SCCEEEECCCCCCCCSSGGGCCHHHHHHHHHHHTHHHHHHHH-HHHTTCCTTCEEEEEC
T ss_pred CCCEEEECCCCcCCCCCcccCCHHHHHHHHHHHhHHHHHHHH-HHHHHHhhCCEEEEEe
Confidence 78999987541 11 112222 5667788888887764
|
| >1qor_A Quinone oxidoreductase; HET: NAP; 2.20A {Escherichia coli} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=90.11 E-value=0.35 Score=43.29 Aligned_cols=96 Identities=16% Similarity=0.151 Sum_probs=58.0
Q ss_pred cCCCCCCEEEEEec--CCCccHHHHHhhhCCCcEEEEEeCChHHHHHHHHHHHcCCCeEEEEccCCCCcc---cc--cCC
Q 021911 139 IWIKPGARVLYLGA--ASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKRTNVIPIIEDARHPAK---YR--MLV 211 (305)
Q Consensus 139 ~~~~~g~~VLDlG~--G~G~~t~~la~~~~~~~~V~avD~s~~~~~~l~~~a~~~~nI~~~~~D~~~~~~---~~--~~~ 211 (305)
..++++++||-.|+ +.|..+..++...+ .+|+++|.++...+.+.+. . .. .. .|..+... .. ...
T Consensus 136 ~~~~~g~~vlV~Ga~ggiG~~~~~~a~~~G--~~V~~~~~~~~~~~~~~~~-g--~~-~~--~~~~~~~~~~~~~~~~~~ 207 (327)
T 1qor_A 136 YEIKPDEQFLFHAAAGGVGLIACQWAKALG--AKLIGTVGTAQKAQSALKA-G--AW-QV--INYREEDLVERLKEITGG 207 (327)
T ss_dssp SCCCTTCEEEESSTTBHHHHHHHHHHHHHT--CEEEEEESSHHHHHHHHHH-T--CS-EE--EETTTSCHHHHHHHHTTT
T ss_pred hCCCCCCEEEEECCCCHHHHHHHHHHHHcC--CEEEEEeCCHHHHHHHHHc-C--CC-EE--EECCCccHHHHHHHHhCC
Confidence 36788999999984 34556666666654 4899999998543333221 1 11 11 23322211 00 012
Q ss_pred CcEeEEEEeCCChhHHHHHHHHHhccCCCCcEEEEE
Q 021911 212 GMVDVIFSDVAQPDQARILALNASYFLKAGGHFVIS 247 (305)
Q Consensus 212 ~~fD~V~~d~~~~~~~~~l~~~a~~~LkpGG~lv~s 247 (305)
..+|+||.+.. .. .+. .+.++|+++|++++.
T Consensus 208 ~~~D~vi~~~g-~~---~~~-~~~~~l~~~G~iv~~ 238 (327)
T 1qor_A 208 KKVRVVYDSVG-RD---TWE-RSLDCLQRRGLMVSF 238 (327)
T ss_dssp CCEEEEEECSC-GG---GHH-HHHHTEEEEEEEEEC
T ss_pred CCceEEEECCc-hH---HHH-HHHHHhcCCCEEEEE
Confidence 36999998776 32 233 666899999998875
|
| >1zkd_A DUF185; NESG, RPR58, structural genomics, PSI, protein structure INI northeast structural genomics consortium, unknown function; 2.10A {Rhodopseudomonas palustris} SCOP: c.66.1.52 | Back alignment and structure |
|---|
Probab=90.08 E-value=0.67 Score=43.02 Aligned_cols=53 Identities=15% Similarity=0.036 Sum_probs=35.1
Q ss_pred HHHHHHccccccCCCCCCEEEEEecCCCccHHHHHhhhC------CCcEEEEEeCChHH
Q 021911 128 LAAAVLGGVDNIWIKPGARVLYLGAASGTTVSHVSDIVG------PNGVVYAVEFSHRS 180 (305)
Q Consensus 128 l~a~ll~~l~~~~~~~g~~VLDlG~G~G~~t~~la~~~~------~~~~V~avD~s~~~ 180 (305)
++..++..++.+.....-.|+|+|+|.|++...+.+.+. ...+++.||+|+..
T Consensus 65 la~~~~~~w~~~g~p~~~~ivElGaG~GtLa~diL~~l~~~p~~~~~~~y~iVE~Sp~L 123 (387)
T 1zkd_A 65 LGLWSASVWKAADEPQTLRLIEIGPGRGTMMADALRALRVLPILYQSLSVHLVEINPVL 123 (387)
T ss_dssp HHHHHHHHHHHTTCCSSEEEEEECCTTSHHHHHHHHHHTTSHHHHTTEEEEEECCCHHH
T ss_pred HHHHHHHHHHHcCCCCCcEEEEECCCcchHHHHHHHHHHhCCccccccEEEEEecCHHH
Confidence 333444333333333345899999999999998876542 23489999999933
|
| >3l9w_A Glutathione-regulated potassium-efflux system Pro linker, ancillary protein KEFF; potassium channel regulation, domains, antiport; HET: FMN AMP GSH; 1.75A {Escherichia coli} PDB: 3eyw_A* 3l9x_A* | Back alignment and structure |
|---|
Probab=89.97 E-value=0.47 Score=44.42 Aligned_cols=97 Identities=11% Similarity=0.095 Sum_probs=67.0
Q ss_pred CCEEEEEecCCCccHHHHHhhhC-CCcEEEEEeCChHHHHHHHHHHHcCCCeEEEEccCCCCccccc-CCCcEeEEEEeC
Q 021911 144 GARVLYLGAASGTTVSHVSDIVG-PNGVVYAVEFSHRSGRDLVNMAKKRTNVIPIIEDARHPAKYRM-LVGMVDVIFSDV 221 (305)
Q Consensus 144 g~~VLDlG~G~G~~t~~la~~~~-~~~~V~avD~s~~~~~~l~~~a~~~~nI~~~~~D~~~~~~~~~-~~~~fD~V~~d~ 221 (305)
.++|+-+|+ |.+...+++.+. ....|++||.++.. ++.+++ ..+.++.+|+++...... -...+|+|++..
T Consensus 4 ~~~viIiG~--Gr~G~~va~~L~~~g~~vvvId~d~~~----v~~~~~-~g~~vi~GDat~~~~L~~agi~~A~~viv~~ 76 (413)
T 3l9w_A 4 GMRVIIAGF--GRFGQITGRLLLSSGVKMVVLDHDPDH----IETLRK-FGMKVFYGDATRMDLLESAGAAKAEVLINAI 76 (413)
T ss_dssp CCSEEEECC--SHHHHHHHHHHHHTTCCEEEEECCHHH----HHHHHH-TTCCCEESCTTCHHHHHHTTTTTCSEEEECC
T ss_pred CCeEEEECC--CHHHHHHHHHHHHCCCCEEEEECCHHH----HHHHHh-CCCeEEEcCCCCHHHHHhcCCCccCEEEECC
Confidence 356777665 778888887653 23579999999944 444443 356788999988764422 246899999988
Q ss_pred CChhHHHHHHHHHhccCCCCcEEEEEE
Q 021911 222 AQPDQARILALNASYFLKAGGHFVISI 248 (305)
Q Consensus 222 ~~~~~~~~l~~~a~~~LkpGG~lv~s~ 248 (305)
+.......+. ...+.+.|.-.++.-.
T Consensus 77 ~~~~~n~~i~-~~ar~~~p~~~Iiara 102 (413)
T 3l9w_A 77 DDPQTNLQLT-EMVKEHFPHLQIIARA 102 (413)
T ss_dssp SSHHHHHHHH-HHHHHHCTTCEEEEEE
T ss_pred CChHHHHHHH-HHHHHhCCCCeEEEEE
Confidence 8766665555 6667778887777654
|
| >3r6d_A NAD-dependent epimerase/dehydratase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, veillo parvula; HET: MLZ; 1.25A {Veillonella parvula dsm 2008} PDB: 4hng_A 4hnh_A* 3r14_A* | Back alignment and structure |
|---|
Probab=89.85 E-value=0.55 Score=39.13 Aligned_cols=75 Identities=13% Similarity=0.134 Sum_probs=51.2
Q ss_pred EEEEEecCCCccHHHHHhhhC--CCcEEEEEeCChH-HHHHHHHHHHcCCCeEEEEccCCCCcccccCCCcEeEEEEeCC
Q 021911 146 RVLYLGAASGTTVSHVSDIVG--PNGVVYAVEFSHR-SGRDLVNMAKKRTNVIPIIEDARHPAKYRMLVGMVDVIFSDVA 222 (305)
Q Consensus 146 ~VLDlG~G~G~~t~~la~~~~--~~~~V~avD~s~~-~~~~l~~~a~~~~nI~~~~~D~~~~~~~~~~~~~fD~V~~d~~ 222 (305)
+||-.| ++|....++++.+- ...+|++++.++. .+.++. ....++.++..|+++..........+|+||.+..
T Consensus 7 ~vlVtG-asg~iG~~~~~~l~~~~g~~V~~~~r~~~~~~~~~~---~~~~~~~~~~~D~~d~~~~~~~~~~~d~vv~~ag 82 (221)
T 3r6d_A 7 YITILG-AAGQIAQXLTATLLTYTDMHITLYGRQLKTRIPPEI---IDHERVTVIEGSFQNPGXLEQAVTNAEVVFVGAM 82 (221)
T ss_dssp EEEEES-TTSHHHHHHHHHHHHHCCCEEEEEESSHHHHSCHHH---HTSTTEEEEECCTTCHHHHHHHHTTCSEEEESCC
T ss_pred EEEEEe-CCcHHHHHHHHHHHhcCCceEEEEecCccccchhhc---cCCCceEEEECCCCCHHHHHHHHcCCCEEEEcCC
Confidence 477777 56777777776543 4568999999874 322221 2346899999999887544333457899999887
Q ss_pred Ch
Q 021911 223 QP 224 (305)
Q Consensus 223 ~~ 224 (305)
..
T Consensus 83 ~~ 84 (221)
T 3r6d_A 83 ES 84 (221)
T ss_dssp CC
T ss_pred CC
Confidence 54
|
| >2eih_A Alcohol dehydrogenase; zinc ION binding protein, structural genomics, NPPSFA, natio project on protein structural and functional analyses; 2.30A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=89.76 E-value=0.65 Score=41.83 Aligned_cols=95 Identities=19% Similarity=0.248 Sum_probs=58.9
Q ss_pred CCCCCCEEEEEec--CCCccHHHHHhhhCCCcEEEEEeCChHHHHHHHHHHHcCCCeEEEEccCCCCc--c-cc-cC-CC
Q 021911 140 WIKPGARVLYLGA--ASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKRTNVIPIIEDARHPA--K-YR-ML-VG 212 (305)
Q Consensus 140 ~~~~g~~VLDlG~--G~G~~t~~la~~~~~~~~V~avD~s~~~~~~l~~~a~~~~nI~~~~~D~~~~~--~-~~-~~-~~ 212 (305)
.++++++||-+|+ +.|..+..++...+ .+|+++|.++...+.+.+. . .. .. .|..+.. . .. .. ..
T Consensus 163 ~~~~g~~vlV~Gasg~iG~~~~~~a~~~G--~~Vi~~~~~~~~~~~~~~~-g--a~-~~--~d~~~~~~~~~~~~~~~~~ 234 (343)
T 2eih_A 163 GVRPGDDVLVMAAGSGVSVAAIQIAKLFG--ARVIATAGSEDKLRRAKAL-G--AD-ET--VNYTHPDWPKEVRRLTGGK 234 (343)
T ss_dssp CCCTTCEEEECSTTSTTHHHHHHHHHHTT--CEEEEEESSHHHHHHHHHH-T--CS-EE--EETTSTTHHHHHHHHTTTT
T ss_pred CCCCCCEEEEECCCchHHHHHHHHHHHCC--CEEEEEeCCHHHHHHHHhc-C--CC-EE--EcCCcccHHHHHHHHhCCC
Confidence 6788999999998 45667777777654 4899999998554433221 1 11 11 2332221 0 00 01 23
Q ss_pred cEeEEEEeCCChhHHHHHHHHHhccCCCCcEEEEE
Q 021911 213 MVDVIFSDVAQPDQARILALNASYFLKAGGHFVIS 247 (305)
Q Consensus 213 ~fD~V~~d~~~~~~~~~l~~~a~~~LkpGG~lv~s 247 (305)
.+|+||.... .. .+. .+.+.|+++|++++.
T Consensus 235 ~~d~vi~~~g-~~---~~~-~~~~~l~~~G~~v~~ 264 (343)
T 2eih_A 235 GADKVVDHTG-AL---YFE-GVIKATANGGRIAIA 264 (343)
T ss_dssp CEEEEEESSC-SS---SHH-HHHHHEEEEEEEEES
T ss_pred CceEEEECCC-HH---HHH-HHHHhhccCCEEEEE
Confidence 7999998776 32 233 566789999998874
|
| >1wly_A CAAR, 2-haloacrylate reductase; NADPH-dependent oxidoreductase, oxidoreductase; 1.30A {Burkholderia SP} | Back alignment and structure |
|---|
Probab=89.46 E-value=0.6 Score=41.85 Aligned_cols=96 Identities=17% Similarity=0.160 Sum_probs=58.1
Q ss_pred cCCCCCCEEEEEec--CCCccHHHHHhhhCCCcEEEEEeCChHHHHHHHHHHHcCCCeEEEEccCCCCcc---cc--cCC
Q 021911 139 IWIKPGARVLYLGA--ASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKRTNVIPIIEDARHPAK---YR--MLV 211 (305)
Q Consensus 139 ~~~~~g~~VLDlG~--G~G~~t~~la~~~~~~~~V~avD~s~~~~~~l~~~a~~~~nI~~~~~D~~~~~~---~~--~~~ 211 (305)
..++++++||-.|+ +.|..+..++...+ .+|+++|.++...+.+.+. . .. .. .|..+... .. ...
T Consensus 141 ~~~~~g~~vlV~Ga~ggiG~~~~~~a~~~G--~~Vi~~~~~~~~~~~~~~~-g--~~-~~--~d~~~~~~~~~i~~~~~~ 212 (333)
T 1wly_A 141 HKVKPGDYVLIHAAAGGMGHIMVPWARHLG--ATVIGTVSTEEKAETARKL-G--CH-HT--INYSTQDFAEVVREITGG 212 (333)
T ss_dssp SCCCTTCEEEETTTTSTTHHHHHHHHHHTT--CEEEEEESSHHHHHHHHHH-T--CS-EE--EETTTSCHHHHHHHHHTT
T ss_pred hCCCCCCEEEEECCccHHHHHHHHHHHHCC--CEEEEEeCCHHHHHHHHHc-C--CC-EE--EECCCHHHHHHHHHHhCC
Confidence 36788999999986 44556666666643 5899999998544333221 1 11 11 23322211 00 012
Q ss_pred CcEeEEEEeCCChhHHHHHHHHHhccCCCCcEEEEE
Q 021911 212 GMVDVIFSDVAQPDQARILALNASYFLKAGGHFVIS 247 (305)
Q Consensus 212 ~~fD~V~~d~~~~~~~~~l~~~a~~~LkpGG~lv~s 247 (305)
..+|+||.+.... .+. .+.++|+++|+++..
T Consensus 213 ~~~d~vi~~~g~~----~~~-~~~~~l~~~G~iv~~ 243 (333)
T 1wly_A 213 KGVDVVYDSIGKD----TLQ-KSLDCLRPRGMCAAY 243 (333)
T ss_dssp CCEEEEEECSCTT----THH-HHHHTEEEEEEEEEC
T ss_pred CCCeEEEECCcHH----HHH-HHHHhhccCCEEEEE
Confidence 3699999877652 233 666899999998875
|
| >4dup_A Quinone oxidoreductase; PSI-biology, structural genomics, protein structure initiati structural genomics research consortium, nysgrc; 2.45A {Rhizobium etli} | Back alignment and structure |
|---|
Probab=89.45 E-value=0.61 Score=42.30 Aligned_cols=98 Identities=20% Similarity=0.133 Sum_probs=58.8
Q ss_pred cCCCCCCEEEEEec--CCCccHHHHHhhhCCCcEEEEEeCChHHHHHHHHHHHcCCCeEEEEccCCCCcc-c-ccCCCcE
Q 021911 139 IWIKPGARVLYLGA--ASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKRTNVIPIIEDARHPAK-Y-RMLVGMV 214 (305)
Q Consensus 139 ~~~~~g~~VLDlG~--G~G~~t~~la~~~~~~~~V~avD~s~~~~~~l~~~a~~~~nI~~~~~D~~~~~~-~-~~~~~~f 214 (305)
..++++++||-+|+ +.|..+..+|...+ .+|+++|.++...+.+.+ ...-..+..+-.+... . ......+
T Consensus 163 ~~~~~g~~VlV~Gg~g~iG~~~~~~a~~~G--a~Vi~~~~~~~~~~~~~~----lGa~~~~~~~~~~~~~~~~~~~~~g~ 236 (353)
T 4dup_A 163 AGLTEGESVLIHGGTSGIGTTAIQLARAFG--AEVYATAGSTGKCEACER----LGAKRGINYRSEDFAAVIKAETGQGV 236 (353)
T ss_dssp TCCCTTCEEEESSTTSHHHHHHHHHHHHTT--CEEEEEESSHHHHHHHHH----HTCSEEEETTTSCHHHHHHHHHSSCE
T ss_pred cCCCCCCEEEEEcCCCHHHHHHHHHHHHcC--CEEEEEeCCHHHHHHHHh----cCCCEEEeCCchHHHHHHHHHhCCCc
Confidence 46789999999853 34667777777754 489999999855433322 2111122211111111 0 0013479
Q ss_pred eEEEEeCCChhHHHHHHHHHhccCCCCcEEEEE
Q 021911 215 DVIFSDVAQPDQARILALNASYFLKAGGHFVIS 247 (305)
Q Consensus 215 D~V~~d~~~~~~~~~l~~~a~~~LkpGG~lv~s 247 (305)
|+||.....+ .+. .+.+.|+++|++++.
T Consensus 237 Dvvid~~g~~----~~~-~~~~~l~~~G~iv~~ 264 (353)
T 4dup_A 237 DIILDMIGAA----YFE-RNIASLAKDGCLSII 264 (353)
T ss_dssp EEEEESCCGG----GHH-HHHHTEEEEEEEEEC
T ss_pred eEEEECCCHH----HHH-HHHHHhccCCEEEEE
Confidence 9999777654 233 566799999998875
|
| >4a2c_A Galactitol-1-phosphate 5-dehydrogenase; oxidoreductase, metal binding-site; 1.87A {Escherichia coli} | Back alignment and structure |
|---|
Probab=89.40 E-value=1.9 Score=38.50 Aligned_cols=101 Identities=13% Similarity=0.122 Sum_probs=60.9
Q ss_pred ccCCCCCCEEEEEecCC-CccHHHHHhhhCCCcEEEEEeCChHHHHHHHHHHHcCCCeEEEEccCCCCccc---ccCCCc
Q 021911 138 NIWIKPGARVLYLGAAS-GTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKRTNVIPIIEDARHPAKY---RMLVGM 213 (305)
Q Consensus 138 ~~~~~~g~~VLDlG~G~-G~~t~~la~~~~~~~~V~avD~s~~~~~~l~~~a~~~~nI~~~~~D~~~~~~~---~~~~~~ 213 (305)
...++++++||-.|+|. |..+..+|+..+ ...++++|.+++ -++.+++.--...+..+-.+.... ......
T Consensus 155 ~~~~~~g~~VlV~GaG~vG~~aiq~ak~~G-~~~vi~~~~~~~----k~~~a~~lGa~~~i~~~~~~~~~~~~~~~~~~g 229 (346)
T 4a2c_A 155 LAQGCENKNVIIIGAGTIGLLAIQCAVALG-AKSVTAIDISSE----KLALAKSFGAMQTFNSSEMSAPQMQSVLRELRF 229 (346)
T ss_dssp HTTCCTTSEEEEECCSHHHHHHHHHHHHTT-CSEEEEEESCHH----HHHHHHHTTCSEEEETTTSCHHHHHHHHGGGCS
T ss_pred HhccCCCCEEEEECCCCcchHHHHHHHHcC-CcEEEEEechHH----HHHHHHHcCCeEEEeCCCCCHHHHHHhhcccCC
Confidence 34678899999998864 445666677654 346789999983 344555442223332221111110 011246
Q ss_pred EeEEEEeCCChhHHHHHHHHHhccCCCCcEEEEE
Q 021911 214 VDVIFSDVAQPDQARILALNASYFLKAGGHFVIS 247 (305)
Q Consensus 214 fD~V~~d~~~~~~~~~l~~~a~~~LkpGG~lv~s 247 (305)
+|+|+.....+... . .+.++|+++|++++.
T Consensus 230 ~d~v~d~~G~~~~~---~-~~~~~l~~~G~~v~~ 259 (346)
T 4a2c_A 230 NQLILETAGVPQTV---E-LAVEIAGPHAQLALV 259 (346)
T ss_dssp SEEEEECSCSHHHH---H-HHHHHCCTTCEEEEC
T ss_pred cccccccccccchh---h-hhhheecCCeEEEEE
Confidence 88888766655433 3 556799999999875
|
| >3gaz_A Alcohol dehydrogenase superfamily protein; oxidoreductase, PSI-II, alcohol dehydrogenase superf structural genomics; 1.96A {Novosphingobium aromaticivorans} | Back alignment and structure |
|---|
Probab=89.14 E-value=0.25 Score=44.76 Aligned_cols=97 Identities=22% Similarity=0.329 Sum_probs=59.2
Q ss_pred cccCCCCCCEEEEEec--CCCccHHHHHhhhCCCcEEEEEeCChHHHHHHHHHHHcCCCeEEEEccCCCCccc---ccCC
Q 021911 137 DNIWIKPGARVLYLGA--ASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKRTNVIPIIEDARHPAKY---RMLV 211 (305)
Q Consensus 137 ~~~~~~~g~~VLDlG~--G~G~~t~~la~~~~~~~~V~avD~s~~~~~~l~~~a~~~~nI~~~~~D~~~~~~~---~~~~ 211 (305)
+...++++++||-+|+ +.|..+..+|...+ .+|+++ .++... +.+++. ....+. +..+.... ....
T Consensus 144 ~~~~~~~g~~VlV~Ga~g~iG~~~~q~a~~~G--a~Vi~~-~~~~~~----~~~~~l-Ga~~i~-~~~~~~~~~~~~~~~ 214 (343)
T 3gaz_A 144 DRAQVQDGQTVLIQGGGGGVGHVAIQIALARG--ARVFAT-ARGSDL----EYVRDL-GATPID-ASREPEDYAAEHTAG 214 (343)
T ss_dssp TTTCCCTTCEEEEETTTSHHHHHHHHHHHHTT--CEEEEE-ECHHHH----HHHHHH-TSEEEE-TTSCHHHHHHHHHTT
T ss_pred HhcCCCCCCEEEEecCCCHHHHHHHHHHHHCC--CEEEEE-eCHHHH----HHHHHc-CCCEec-cCCCHHHHHHHHhcC
Confidence 3446789999999995 34667777887754 489999 777443 233322 122222 22221110 0112
Q ss_pred CcEeEEEEeCCChhHHHHHHHHHhccCCCCcEEEEE
Q 021911 212 GMVDVIFSDVAQPDQARILALNASYFLKAGGHFVIS 247 (305)
Q Consensus 212 ~~fD~V~~d~~~~~~~~~l~~~a~~~LkpGG~lv~s 247 (305)
..+|+||-....+ .+. .+.+.|+++|++++.
T Consensus 215 ~g~D~vid~~g~~----~~~-~~~~~l~~~G~iv~~ 245 (343)
T 3gaz_A 215 QGFDLVYDTLGGP----VLD-ASFSAVKRFGHVVSC 245 (343)
T ss_dssp SCEEEEEESSCTH----HHH-HHHHHEEEEEEEEES
T ss_pred CCceEEEECCCcH----HHH-HHHHHHhcCCeEEEE
Confidence 4799999766642 344 667899999999874
|
| >3o38_A Short chain dehydrogenase; tuberculosis, ortholog from A non-pathogenic dehydrogenase, structural genomics; 1.95A {Mycobacterium smegmatis} | Back alignment and structure |
|---|
Probab=89.11 E-value=1.5 Score=37.53 Aligned_cols=79 Identities=18% Similarity=0.194 Sum_probs=53.1
Q ss_pred CCCEEEEEec-CCCccHHHHHhhh-CCCcEEEEEeCChHHHHHHHHHHHcC--CCeEEEEccCCCCcccccC-------C
Q 021911 143 PGARVLYLGA-ASGTTVSHVSDIV-GPNGVVYAVEFSHRSGRDLVNMAKKR--TNVIPIIEDARHPAKYRML-------V 211 (305)
Q Consensus 143 ~g~~VLDlG~-G~G~~t~~la~~~-~~~~~V~avD~s~~~~~~l~~~a~~~--~nI~~~~~D~~~~~~~~~~-------~ 211 (305)
.+.+||-.|+ |.| ...++++.+ ....+|+.++.++....++.+..++. .++.++.+|+++....... .
T Consensus 21 ~~k~vlITGasg~G-IG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~Dl~~~~~v~~~~~~~~~~~ 99 (266)
T 3o38_A 21 KGKVVLVTAAAGTG-IGSTTARRALLEGADVVISDYHERRLGETRDQLADLGLGRVEAVVCDVTSTEAVDALITQTVEKA 99 (266)
T ss_dssp TTCEEEESSCSSSS-HHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHTTCSSCEEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCc-hHHHHHHHHHHCCCEEEEecCCHHHHHHHHHHHHhcCCCceEEEEeCCCCHHHHHHHHHHHHHHh
Confidence 4678888887 344 455555433 23458999999987766666665443 5799999999886532211 1
Q ss_pred CcEeEEEEeCC
Q 021911 212 GMVDVIFSDVA 222 (305)
Q Consensus 212 ~~fD~V~~d~~ 222 (305)
..+|+||.++.
T Consensus 100 g~id~li~~Ag 110 (266)
T 3o38_A 100 GRLDVLVNNAG 110 (266)
T ss_dssp SCCCEEEECCC
T ss_pred CCCcEEEECCC
Confidence 47899998765
|
| >1tt7_A YHFP; alcohol dehydrogenase, Zn-dependent, NAD, structural genomics, protein structure initiative, PSI; 2.70A {Bacillus subtilis} SCOP: b.35.1.2 c.2.1.1 PDB: 1y9e_A* | Back alignment and structure |
|---|
Probab=89.03 E-value=0.3 Score=43.75 Aligned_cols=96 Identities=20% Similarity=0.132 Sum_probs=57.3
Q ss_pred CCCCCC-EEEEEec--CCCccHHHHHhhhCCCcEEEEEeCChHHHHHHHHHHHcCCCeEEEEc-cC-CCCcccccCCCcE
Q 021911 140 WIKPGA-RVLYLGA--ASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKRTNVIPIIE-DA-RHPAKYRMLVGMV 214 (305)
Q Consensus 140 ~~~~g~-~VLDlG~--G~G~~t~~la~~~~~~~~V~avD~s~~~~~~l~~~a~~~~nI~~~~~-D~-~~~~~~~~~~~~f 214 (305)
.+++++ +||-+|| +.|..+..+|+..+ .+|++++.++...+.+.+ .-. +. .+.. |. ..... ......+
T Consensus 146 ~~~~g~~~VlV~Ga~G~vG~~~~q~a~~~G--a~vi~~~~~~~~~~~~~~-lGa-~~--v~~~~~~~~~~~~-~~~~~~~ 218 (330)
T 1tt7_A 146 GLSPEKGSVLVTGATGGVGGIAVSMLNKRG--YDVVASTGNREAADYLKQ-LGA-SE--VISREDVYDGTLK-ALSKQQW 218 (330)
T ss_dssp TCCGGGCCEEEESTTSHHHHHHHHHHHHHT--CCEEEEESSSSTHHHHHH-HTC-SE--EEEHHHHCSSCCC-SSCCCCE
T ss_pred CcCCCCceEEEECCCCHHHHHHHHHHHHCC--CEEEEEeCCHHHHHHHHH-cCC-cE--EEECCCchHHHHH-HhhcCCc
Confidence 567775 8999997 35567777787765 479999988644333222 111 11 1111 11 01000 0112469
Q ss_pred eEEEEeCCChhHHHHHHHHHhccCCCCcEEEEE
Q 021911 215 DVIFSDVAQPDQARILALNASYFLKAGGHFVIS 247 (305)
Q Consensus 215 D~V~~d~~~~~~~~~l~~~a~~~LkpGG~lv~s 247 (305)
|+||-....+ .+. .+.+.|+++|++++.
T Consensus 219 d~vid~~g~~----~~~-~~~~~l~~~G~iv~~ 246 (330)
T 1tt7_A 219 QGAVDPVGGK----QLA-SLLSKIQYGGSVAVS 246 (330)
T ss_dssp EEEEESCCTH----HHH-HHHTTEEEEEEEEEC
T ss_pred cEEEECCcHH----HHH-HHHHhhcCCCEEEEE
Confidence 9998766653 344 777899999999875
|
| >3edm_A Short chain dehydrogenase; structural genomics, oxidoreductase, PSI-2, P structure initiative; 2.30A {Agrobacterium tumefaciens str} | Back alignment and structure |
|---|
Probab=88.95 E-value=1.3 Score=38.12 Aligned_cols=79 Identities=11% Similarity=0.072 Sum_probs=50.1
Q ss_pred CCCEEEEEecCCCccHHHHHhhhC-CCcEEEEE-eCChHHHHHHHHHHHcC-CCeEEEEccCCCCcccccC-------CC
Q 021911 143 PGARVLYLGAASGTTVSHVSDIVG-PNGVVYAV-EFSHRSGRDLVNMAKKR-TNVIPIIEDARHPAKYRML-------VG 212 (305)
Q Consensus 143 ~g~~VLDlG~G~G~~t~~la~~~~-~~~~V~av-D~s~~~~~~l~~~a~~~-~nI~~~~~D~~~~~~~~~~-------~~ 212 (305)
.+.+||-.|++. ....++++.+- ...+|+.+ +.++.......+..+.. .++.++.+|+++....... .+
T Consensus 7 ~~k~vlVTGas~-GIG~aia~~la~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~g 85 (259)
T 3edm_A 7 TNRTIVVAGAGR-DIGRACAIRFAQEGANVVLTYNGAAEGAATAVAEIEKLGRSALAIKADLTNAAEVEAAISAAADKFG 85 (259)
T ss_dssp TTCEEEEETTTS-HHHHHHHHHHHHTTCEEEEEECSSCHHHHHHHHHHHTTTSCCEEEECCTTCHHHHHHHHHHHHHHHC
T ss_pred CCCEEEEECCCc-hHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHHHhcCCceEEEEcCCCCHHHHHHHHHHHHHHhC
Confidence 357888888665 46666665442 23578877 66665555555444433 5789999999886532211 14
Q ss_pred cEeEEEEeCC
Q 021911 213 MVDVIFSDVA 222 (305)
Q Consensus 213 ~fD~V~~d~~ 222 (305)
.+|+++.++.
T Consensus 86 ~id~lv~nAg 95 (259)
T 3edm_A 86 EIHGLVHVAG 95 (259)
T ss_dssp SEEEEEECCC
T ss_pred CCCEEEECCC
Confidence 7999998764
|
| >3grk_A Enoyl-(acyl-carrier-protein) reductase (NADH); ssgcid, niaid, structural genomics, seattle structural genomics center for infectious disease; 2.35A {Brucella melitensis} PDB: 4eit_A* | Back alignment and structure |
|---|
Probab=88.95 E-value=1.8 Score=38.06 Aligned_cols=80 Identities=14% Similarity=0.131 Sum_probs=51.0
Q ss_pred CCCEEEEEecCCC-ccHHHHHhhh-CCCcEEEEEeCChHHHHHHHHHHHcCCCeEEEEccCCCCccccc-------CCCc
Q 021911 143 PGARVLYLGAASG-TTVSHVSDIV-GPNGVVYAVEFSHRSGRDLVNMAKKRTNVIPIIEDARHPAKYRM-------LVGM 213 (305)
Q Consensus 143 ~g~~VLDlG~G~G-~~t~~la~~~-~~~~~V~avD~s~~~~~~l~~~a~~~~nI~~~~~D~~~~~~~~~-------~~~~ 213 (305)
.+.+||-.|++.+ ....++++.+ ....+|+.++.++...+.+.+......++.++.+|+++...... ..+.
T Consensus 30 ~gk~~lVTGasg~~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~g~ 109 (293)
T 3grk_A 30 QGKRGLILGVANNRSIAWGIAKAAREAGAELAFTYQGDALKKRVEPLAEELGAFVAGHCDVADAASIDAVFETLEKKWGK 109 (293)
T ss_dssp TTCEEEEECCCSSSSHHHHHHHHHHHTTCEEEEEECSHHHHHHHHHHHHHHTCEEEEECCTTCHHHHHHHHHHHHHHTSC
T ss_pred CCCEEEEEcCCCCCcHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHHHhcCCceEEECCCCCHHHHHHHHHHHHHhcCC
Confidence 4688999998753 3555555443 22357999998864433333333333578899999988753221 1247
Q ss_pred EeEEEEeCC
Q 021911 214 VDVIFSDVA 222 (305)
Q Consensus 214 fD~V~~d~~ 222 (305)
+|++|.++.
T Consensus 110 iD~lVnnAG 118 (293)
T 3grk_A 110 LDFLVHAIG 118 (293)
T ss_dssp CSEEEECCC
T ss_pred CCEEEECCc
Confidence 899998764
|
| >3e48_A Putative nucleoside-diphosphate-sugar epimerase; alpha-beta protein., structural genomics, PSI-2, protein STR initiative; 1.60A {Staphylococcus aureus subsp} | Back alignment and structure |
|---|
Probab=88.88 E-value=1.5 Score=37.93 Aligned_cols=71 Identities=11% Similarity=-0.055 Sum_probs=48.6
Q ss_pred EEEEEecCCCccHHHHHhhhCC--CcEEEEEeCChHHHHHHHHHHHcCCCeEEEEccCCCCcccccCCCcEeEEEEeCC
Q 021911 146 RVLYLGAASGTTVSHVSDIVGP--NGVVYAVEFSHRSGRDLVNMAKKRTNVIPIIEDARHPAKYRMLVGMVDVIFSDVA 222 (305)
Q Consensus 146 ~VLDlG~G~G~~t~~la~~~~~--~~~V~avD~s~~~~~~l~~~a~~~~nI~~~~~D~~~~~~~~~~~~~fD~V~~d~~ 222 (305)
+||-.| ++|....++++.+.. ..+|++++-++.... .. ...+++++..|+.+..........+|+||....
T Consensus 2 ~ilVtG-atG~iG~~l~~~L~~~~g~~V~~~~R~~~~~~----~~-~~~~v~~~~~D~~d~~~l~~~~~~~d~vi~~a~ 74 (289)
T 3e48_A 2 NIMLTG-ATGHLGTHITNQAIANHIDHFHIGVRNVEKVP----DD-WRGKVSVRQLDYFNQESMVEAFKGMDTVVFIPS 74 (289)
T ss_dssp CEEEET-TTSHHHHHHHHHHHHTTCTTEEEEESSGGGSC----GG-GBTTBEEEECCTTCHHHHHHHTTTCSEEEECCC
T ss_pred EEEEEc-CCchHHHHHHHHHhhCCCCcEEEEECCHHHHH----Hh-hhCCCEEEEcCCCCHHHHHHHHhCCCEEEEeCC
Confidence 466665 578888888876532 457999988763211 11 125899999999887654434568899998766
|
| >3ek2_A Enoyl-(acyl-carrier-protein) reductase (NADH); ssgcid, oxidoreductase, structural genomics; 1.90A {Burkholderia pseudomallei 1710B} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=88.73 E-value=1.6 Score=37.39 Aligned_cols=82 Identities=11% Similarity=0.098 Sum_probs=54.7
Q ss_pred CCCCCEEEEEecC-CCccHHHHHhhhC-CCcEEEEEeCChHHHHHHHHHHHcCCCeEEEEccCCCCccccc-------CC
Q 021911 141 IKPGARVLYLGAA-SGTTVSHVSDIVG-PNGVVYAVEFSHRSGRDLVNMAKKRTNVIPIIEDARHPAKYRM-------LV 211 (305)
Q Consensus 141 ~~~g~~VLDlG~G-~G~~t~~la~~~~-~~~~V~avD~s~~~~~~l~~~a~~~~nI~~~~~D~~~~~~~~~-------~~ 211 (305)
..++.+||-.|+. ++....++++.+- ...+|+.++.+.+....+.+..+...++.++.+|+++...... ..
T Consensus 11 ~~~~k~vlITGa~~~~giG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~ 90 (271)
T 3ek2_A 11 FLDGKRILLTGLLSNRSIAYGIAKACKREGAELAFTYVGDRFKDRITEFAAEFGSELVFPCDVADDAQIDALFASLKTHW 90 (271)
T ss_dssp TTTTCEEEECCCCSTTSHHHHHHHHHHHTTCEEEEEESSGGGHHHHHHHHHHTTCCCEEECCTTCHHHHHHHHHHHHHHC
T ss_pred ccCCCEEEEeCCCCCCcHHHHHHHHHHHcCCCEEEEecchhhHHHHHHHHHHcCCcEEEECCCCCHHHHHHHHHHHHHHc
Confidence 3457899999975 3667777776542 3458999988865444444444545668899999988653221 12
Q ss_pred CcEeEEEEeCC
Q 021911 212 GMVDVIFSDVA 222 (305)
Q Consensus 212 ~~fD~V~~d~~ 222 (305)
..+|+||.++.
T Consensus 91 g~id~lv~nAg 101 (271)
T 3ek2_A 91 DSLDGLVHSIG 101 (271)
T ss_dssp SCEEEEEECCC
T ss_pred CCCCEEEECCc
Confidence 47899998654
|
| >1yb5_A Quinone oxidoreductase; medium-chain dehydrogenase/reductase, quinon reduction, structural genomics, structural genomics consort; HET: NAP; 1.85A {Homo sapiens} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=88.68 E-value=0.72 Score=41.84 Aligned_cols=96 Identities=17% Similarity=0.216 Sum_probs=58.4
Q ss_pred cCCCCCCEEEEEec--CCCccHHHHHhhhCCCcEEEEEeCChHHHHHHHHHHHcCCCeEEEEccCCCCcc---cc--cCC
Q 021911 139 IWIKPGARVLYLGA--ASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKRTNVIPIIEDARHPAK---YR--MLV 211 (305)
Q Consensus 139 ~~~~~g~~VLDlG~--G~G~~t~~la~~~~~~~~V~avD~s~~~~~~l~~~a~~~~nI~~~~~D~~~~~~---~~--~~~ 211 (305)
..++++++||-.|+ +.|..+..++...+ .+|++++.++...+ .+++...-.. .|..+... .. ...
T Consensus 166 ~~~~~g~~vlV~GasggiG~~~~~~a~~~G--a~Vi~~~~~~~~~~----~~~~~ga~~~--~d~~~~~~~~~~~~~~~~ 237 (351)
T 1yb5_A 166 ACVKAGESVLVHGASGGVGLAACQIARAYG--LKILGTAGTEEGQK----IVLQNGAHEV--FNHREVNYIDKIKKYVGE 237 (351)
T ss_dssp SCCCTTCEEEEETCSSHHHHHHHHHHHHTT--CEEEEEESSHHHHH----HHHHTTCSEE--EETTSTTHHHHHHHHHCT
T ss_pred hCCCCcCEEEEECCCChHHHHHHHHHHHCC--CEEEEEeCChhHHH----HHHHcCCCEE--EeCCCchHHHHHHHHcCC
Confidence 36788999999997 34556666666644 58999999984433 3333211112 23322111 00 012
Q ss_pred CcEeEEEEeCCChhHHHHHHHHHhccCCCCcEEEEE
Q 021911 212 GMVDVIFSDVAQPDQARILALNASYFLKAGGHFVIS 247 (305)
Q Consensus 212 ~~fD~V~~d~~~~~~~~~l~~~a~~~LkpGG~lv~s 247 (305)
..+|+||.+...+ .+. .+.++|+++|++++.
T Consensus 238 ~~~D~vi~~~G~~----~~~-~~~~~l~~~G~iv~~ 268 (351)
T 1yb5_A 238 KGIDIIIEMLANV----NLS-KDLSLLSHGGRVIVV 268 (351)
T ss_dssp TCEEEEEESCHHH----HHH-HHHHHEEEEEEEEEC
T ss_pred CCcEEEEECCChH----HHH-HHHHhccCCCEEEEE
Confidence 3799999776532 344 677899999999874
|
| >3ruf_A WBGU; rossmann fold, UDP-hexose 4-epimerase, isomerase; HET: NAD UDP; 2.00A {Plesiomonas shigelloides} SCOP: c.2.1.2 PDB: 3ru9_A* 3rud_A* 3rue_A* 3rua_A* 3ruh_A* 3ruc_A* 3ru7_A* 3lu1_A* | Back alignment and structure |
|---|
Probab=88.62 E-value=1.2 Score=39.67 Aligned_cols=78 Identities=18% Similarity=0.131 Sum_probs=52.6
Q ss_pred CCEEEEEecCCCccHHHHHhhh-CCCcEEEEEeCChHHHHHHHHHHHcC------CCeEEEEccCCCCcccccCCCcEeE
Q 021911 144 GARVLYLGAASGTTVSHVSDIV-GPNGVVYAVEFSHRSGRDLVNMAKKR------TNVIPIIEDARHPAKYRMLVGMVDV 216 (305)
Q Consensus 144 g~~VLDlG~G~G~~t~~la~~~-~~~~~V~avD~s~~~~~~l~~~a~~~------~nI~~~~~D~~~~~~~~~~~~~fD~ 216 (305)
.++||-.| |+|....++++.+ ....+|++++.++......+...... .+++++.+|+.+..........+|+
T Consensus 25 ~~~vlVtG-atG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~d~ 103 (351)
T 3ruf_A 25 PKTWLITG-VAGFIGSNLLEKLLKLNQVVIGLDNFSTGHQYNLDEVKTLVSTEQWSRFCFIEGDIRDLTTCEQVMKGVDH 103 (351)
T ss_dssp CCEEEEET-TTSHHHHHHHHHHHHTTCEEEEEECCSSCCHHHHHHHHHTSCHHHHTTEEEEECCTTCHHHHHHHTTTCSE
T ss_pred CCeEEEEC-CCcHHHHHHHHHHHHCCCEEEEEeCCCCCchhhhhhhhhccccccCCceEEEEccCCCHHHHHHHhcCCCE
Confidence 57898877 5788888888765 23358999987532212223333222 5899999999887654434458999
Q ss_pred EEEeCC
Q 021911 217 IFSDVA 222 (305)
Q Consensus 217 V~~d~~ 222 (305)
||..+.
T Consensus 104 Vih~A~ 109 (351)
T 3ruf_A 104 VLHQAA 109 (351)
T ss_dssp EEECCC
T ss_pred EEECCc
Confidence 998765
|
| >4ina_A Saccharopine dehydrogenase; structural genomics, PSI-biology, northeast structural genom consortium, NESG, oxidoreductas; 2.49A {Wolinella succinogenes} | Back alignment and structure |
|---|
Probab=88.61 E-value=0.86 Score=42.38 Aligned_cols=85 Identities=15% Similarity=0.170 Sum_probs=55.2
Q ss_pred CEEEEEecCCCccHHHHHhhhCCC----cEEEEEeCChHHHHHHHHHHHcC--CCeEEEEccCCCCcccccCCC--cEeE
Q 021911 145 ARVLYLGAASGTTVSHVSDIVGPN----GVVYAVEFSHRSGRDLVNMAKKR--TNVIPIIEDARHPAKYRMLVG--MVDV 216 (305)
Q Consensus 145 ~~VLDlG~G~G~~t~~la~~~~~~----~~V~avD~s~~~~~~l~~~a~~~--~nI~~~~~D~~~~~~~~~~~~--~fD~ 216 (305)
.+||-+|| |.....++..+-.. ..|+.+|.++...+.+.+..... .++.++..|+.+......+.. .+|+
T Consensus 2 ~kVlIiGa--GgiG~~ia~~L~~~g~~~~~V~v~~r~~~~~~~la~~l~~~~~~~~~~~~~D~~d~~~l~~~l~~~~~Dv 79 (405)
T 4ina_A 2 AKVLQIGA--GGVGGVVAHKMAMNREVFSHITLASRTLSKCQEIAQSIKAKGYGEIDITTVDADSIEELVALINEVKPQI 79 (405)
T ss_dssp CEEEEECC--SHHHHHHHHHHHTCTTTCCEEEEEESCHHHHHHHHHHHHHTTCCCCEEEECCTTCHHHHHHHHHHHCCSE
T ss_pred CEEEEECC--CHHHHHHHHHHHhCCCCceEEEEEECCHHHHHHHHHHhhhhcCCceEEEEecCCCHHHHHHHHHhhCCCE
Confidence 47888888 57777777655332 28999999987666665554432 368899999987644322222 3899
Q ss_pred EEEeCCChhHHHHHH
Q 021911 217 IFSDVAQPDQARILA 231 (305)
Q Consensus 217 V~~d~~~~~~~~~l~ 231 (305)
|+...+......++.
T Consensus 80 Vin~ag~~~~~~v~~ 94 (405)
T 4ina_A 80 VLNIALPYQDLTIME 94 (405)
T ss_dssp EEECSCGGGHHHHHH
T ss_pred EEECCCcccChHHHH
Confidence 998876444344443
|
| >3v2g_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics, PSI-biology, protein structure initiati nysgrc; 2.30A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=88.35 E-value=1.7 Score=37.66 Aligned_cols=105 Identities=13% Similarity=0.190 Sum_probs=62.8
Q ss_pred CCCEEEEEecCCCccHHHHHhhhC-CCcEEEEEeCC-hHHHHHHHHHHHcC-CCeEEEEccCCCCcccccC-------CC
Q 021911 143 PGARVLYLGAASGTTVSHVSDIVG-PNGVVYAVEFS-HRSGRDLVNMAKKR-TNVIPIIEDARHPAKYRML-------VG 212 (305)
Q Consensus 143 ~g~~VLDlG~G~G~~t~~la~~~~-~~~~V~avD~s-~~~~~~l~~~a~~~-~nI~~~~~D~~~~~~~~~~-------~~ 212 (305)
.+.+||-.|++. ....++++.+- ...+|+.++.+ ....+.+.+..+.. .++.++.+|+++....... .+
T Consensus 30 ~gk~~lVTGas~-GIG~aia~~la~~G~~V~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~g 108 (271)
T 3v2g_A 30 AGKTAFVTGGSR-GIGAAIAKRLALEGAAVALTYVNAAERAQAVVSEIEQAGGRAVAIRADNRDAEAIEQAIRETVEALG 108 (271)
T ss_dssp TTCEEEEETTTS-HHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHHHHS
T ss_pred CCCEEEEeCCCc-HHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHHHHhcCCcEEEEECCCCCHHHHHHHHHHHHHHcC
Confidence 467888888765 56666665442 33578888665 34444444444433 5789999999886532211 13
Q ss_pred cEeEEEEeCCC----------hh-HHH----------HHHHHHhccCCCCcEEEEEE
Q 021911 213 MVDVIFSDVAQ----------PD-QAR----------ILALNASYFLKAGGHFVISI 248 (305)
Q Consensus 213 ~fD~V~~d~~~----------~~-~~~----------~l~~~a~~~LkpGG~lv~s~ 248 (305)
.+|+++.++.. ++ ..+ .+.+.+...|+++|.+++..
T Consensus 109 ~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~m~~~g~iv~is 165 (271)
T 3v2g_A 109 GLDILVNSAGIWHSAPLEETTVADFDEVMAVNFRAPFVAIRSASRHLGDGGRIITIG 165 (271)
T ss_dssp CCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHCCTTCEEEEEC
T ss_pred CCcEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHhcCCEEEEEe
Confidence 78999987651 11 111 12224566777888887764
|
| >3fbg_A Putative arginate lyase; structural genomics, unknown function, PSI-2, protein structure initiative; 1.60A {Staphylococcus haemolyticus} | Back alignment and structure |
|---|
Probab=88.08 E-value=0.24 Score=44.85 Aligned_cols=93 Identities=15% Similarity=0.233 Sum_probs=54.5
Q ss_pred CCCEEEEEe-cC-CCccHHHHHhhhCCCcEEEEEeCChHHHHHHHHHHHcCCCeEEEEccCCC-Ccc-c-ccCCCcEeEE
Q 021911 143 PGARVLYLG-AA-SGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKRTNVIPIIEDARH-PAK-Y-RMLVGMVDVI 217 (305)
Q Consensus 143 ~g~~VLDlG-~G-~G~~t~~la~~~~~~~~V~avD~s~~~~~~l~~~a~~~~nI~~~~~D~~~-~~~-~-~~~~~~fD~V 217 (305)
++++||-+| +| .|..+..+|...+ .+|++++.++...+.+.+.-. + ..+ |..+ ... . ......||+|
T Consensus 150 ~g~~VlV~gg~G~vG~~a~qla~~~G--a~Vi~~~~~~~~~~~~~~lGa--~--~vi--~~~~~~~~~~~~~~~~g~Dvv 221 (346)
T 3fbg_A 150 EGKTLLIINGAGGVGSIATQIAKAYG--LRVITTASRNETIEWTKKMGA--D--IVL--NHKESLLNQFKTQGIELVDYV 221 (346)
T ss_dssp TTCEEEEESTTSHHHHHHHHHHHHTT--CEEEEECCSHHHHHHHHHHTC--S--EEE--CTTSCHHHHHHHHTCCCEEEE
T ss_pred CCCEEEEEcCCCHHHHHHHHHHHHcC--CEEEEEeCCHHHHHHHHhcCC--c--EEE--ECCccHHHHHHHhCCCCccEE
Confidence 899999985 33 3556777777754 489999998854333332111 1 111 2111 110 0 0113479999
Q ss_pred EEeCCChhHHHHHHHHHhccCCCCcEEEEE
Q 021911 218 FSDVAQPDQARILALNASYFLKAGGHFVIS 247 (305)
Q Consensus 218 ~~d~~~~~~~~~l~~~a~~~LkpGG~lv~s 247 (305)
|-....+. .+. .+.++|+++|+++..
T Consensus 222 ~d~~g~~~---~~~-~~~~~l~~~G~iv~~ 247 (346)
T 3fbg_A 222 FCTFNTDM---YYD-DMIQLVKPRGHIATI 247 (346)
T ss_dssp EESSCHHH---HHH-HHHHHEEEEEEEEES
T ss_pred EECCCchH---HHH-HHHHHhccCCEEEEE
Confidence 97655332 233 566899999999764
|
| >1ja9_A 4HNR, 1,3,6,8-tetrahydroxynaphthalene reductase; protein-NADPH-active site inhibitor complex, oxidoreductase, chain dehydrogenase; HET: NDP PYQ; 1.50A {Magnaporthe grisea} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=87.99 E-value=0.96 Score=38.79 Aligned_cols=78 Identities=22% Similarity=0.246 Sum_probs=51.0
Q ss_pred CCEEEEEecCCCccHHHHHhhhC-CCcEEEEEeC-ChHHHHHHHHHHHc-CCCeEEEEccCCCCcccccC-------CCc
Q 021911 144 GARVLYLGAASGTTVSHVSDIVG-PNGVVYAVEF-SHRSGRDLVNMAKK-RTNVIPIIEDARHPAKYRML-------VGM 213 (305)
Q Consensus 144 g~~VLDlG~G~G~~t~~la~~~~-~~~~V~avD~-s~~~~~~l~~~a~~-~~nI~~~~~D~~~~~~~~~~-------~~~ 213 (305)
+++||-.|+ +|....++++.+- ...+|+.++. ++....++.+..+. ..++.++.+|+.+....... ...
T Consensus 21 ~k~vlItGa-sggiG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~ 99 (274)
T 1ja9_A 21 GKVALTTGA-GRGIGRGIAIELGRRGASVVVNYGSSSKAAEEVVAELKKLGAQGVAIQADISKPSEVVALFDKAVSHFGG 99 (274)
T ss_dssp TCEEEETTT-TSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHHTTCCEEEEECCTTSHHHHHHHHHHHHHHHSC
T ss_pred CCEEEEeCC-CchHHHHHHHHHHHCCCEEEEEcCCchHHHHHHHHHHHhcCCcEEEEEecCCCHHHHHHHHHHHHHHcCC
Confidence 567887775 5677777776542 2358999988 66555555444433 25788999999876532211 137
Q ss_pred EeEEEEeCC
Q 021911 214 VDVIFSDVA 222 (305)
Q Consensus 214 fD~V~~d~~ 222 (305)
+|+|+.++.
T Consensus 100 ~d~vi~~Ag 108 (274)
T 1ja9_A 100 LDFVMSNSG 108 (274)
T ss_dssp EEEEECCCC
T ss_pred CCEEEECCC
Confidence 999997654
|
| >3ius_A Uncharacterized conserved protein; APC63810, silicibacter pomeroyi DSS, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.66A {Ruegeria pomeroyi dss-3} | Back alignment and structure |
|---|
Probab=87.85 E-value=4.9 Score=34.43 Aligned_cols=66 Identities=14% Similarity=0.209 Sum_probs=48.8
Q ss_pred CEEEEEecCCCccHHHHHhhhC-CCcEEEEEeCChHHHHHHHHHHHcCCCeEEEEccCCCCcccccCCCcEeEEEEeCC
Q 021911 145 ARVLYLGAASGTTVSHVSDIVG-PNGVVYAVEFSHRSGRDLVNMAKKRTNVIPIIEDARHPAKYRMLVGMVDVIFSDVA 222 (305)
Q Consensus 145 ~~VLDlG~G~G~~t~~la~~~~-~~~~V~avD~s~~~~~~l~~~a~~~~nI~~~~~D~~~~~~~~~~~~~fD~V~~d~~ 222 (305)
++||=.| + |....++++.+- ...+|++++-++.....+ .. .+++++..|+.++. ...+|+||..++
T Consensus 6 ~~ilVtG-a-G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~----~~-~~~~~~~~D~~d~~-----~~~~d~vi~~a~ 72 (286)
T 3ius_A 6 GTLLSFG-H-GYTARVLSRALAPQGWRIIGTSRNPDQMEAI----RA-SGAEPLLWPGEEPS-----LDGVTHLLISTA 72 (286)
T ss_dssp CEEEEET-C-CHHHHHHHHHHGGGTCEEEEEESCGGGHHHH----HH-TTEEEEESSSSCCC-----CTTCCEEEECCC
T ss_pred CcEEEEC-C-cHHHHHHHHHHHHCCCEEEEEEcChhhhhhH----hh-CCCeEEEecccccc-----cCCCCEEEECCC
Confidence 6899999 4 999999998763 234899999887432222 11 57999999998854 357899998665
|
| >2zb4_A Prostaglandin reductase 2; rossmann fold, alternative splicing, cytoplasm, NADP, oxidoreductase; HET: NAP 5OP; 1.63A {Homo sapiens} PDB: 2zb7_A* 2zb8_A* 2w98_A* 2vna_A* 2w4q_A* 1vj1_A 2zb3_A* | Back alignment and structure |
|---|
Probab=87.58 E-value=0.69 Score=41.86 Aligned_cols=97 Identities=16% Similarity=0.209 Sum_probs=57.9
Q ss_pred cCCCCC--CEEEEEec--CCCccHHHHHhhhCCCc-EEEEEeCChHHHHHHHHHHHcCCCeEEEEccCCCCcc---c-cc
Q 021911 139 IWIKPG--ARVLYLGA--ASGTTVSHVSDIVGPNG-VVYAVEFSHRSGRDLVNMAKKRTNVIPIIEDARHPAK---Y-RM 209 (305)
Q Consensus 139 ~~~~~g--~~VLDlG~--G~G~~t~~la~~~~~~~-~V~avD~s~~~~~~l~~~a~~~~nI~~~~~D~~~~~~---~-~~ 209 (305)
..++++ ++||-.|+ +.|..+..++...+ . +|+++|.++... +.+++.-... ...|..+... . ..
T Consensus 154 ~~~~~g~~~~vlI~GasggiG~~~~~~a~~~G--a~~Vi~~~~~~~~~----~~~~~~~g~~-~~~d~~~~~~~~~~~~~ 226 (357)
T 2zb4_A 154 GHITAGSNKTMVVSGAAGACGSVAGQIGHFLG--CSRVVGICGTHEKC----ILLTSELGFD-AAINYKKDNVAEQLRES 226 (357)
T ss_dssp SCCCTTSCCEEEESSTTBHHHHHHHHHHHHTT--CSEEEEEESCHHHH----HHHHHTSCCS-EEEETTTSCHHHHHHHH
T ss_pred cCCCCCCccEEEEECCCcHHHHHHHHHHHHCC--CCeEEEEeCCHHHH----HHHHHHcCCc-eEEecCchHHHHHHHHh
Confidence 367889 99999997 34445556666543 4 899999997433 3333211111 1123332211 0 00
Q ss_pred CCCcEeEEEEeCCChhHHHHHHHHHhccCCCCcEEEEE
Q 021911 210 LVGMVDVIFSDVAQPDQARILALNASYFLKAGGHFVIS 247 (305)
Q Consensus 210 ~~~~fD~V~~d~~~~~~~~~l~~~a~~~LkpGG~lv~s 247 (305)
....+|+||.+... ..+. .+.++|+++|++++.
T Consensus 227 ~~~~~d~vi~~~G~----~~~~-~~~~~l~~~G~iv~~ 259 (357)
T 2zb4_A 227 CPAGVDVYFDNVGG----NISD-TVISQMNENSHIILC 259 (357)
T ss_dssp CTTCEEEEEESCCH----HHHH-HHHHTEEEEEEEEEC
T ss_pred cCCCCCEEEECCCH----HHHH-HHHHHhccCcEEEEE
Confidence 11269999977763 3454 777899999999875
|
| >4dcm_A Ribosomal RNA large subunit methyltransferase G; 23S rRNA (guanine1835-N2)-methyltransferase; HET: SAM; 2.30A {Escherichia coli} | Back alignment and structure |
|---|
Probab=87.58 E-value=1.9 Score=39.63 Aligned_cols=94 Identities=12% Similarity=0.013 Sum_probs=58.7
Q ss_pred CCCEEEEEecCCCccHHHHHhhhCCCcEEEEEeCChHHHHHHHHHHHcC----CCeEEEEccCCCCcccccCCCcEeEEE
Q 021911 143 PGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKR----TNVIPIIEDARHPAKYRMLVGMVDVIF 218 (305)
Q Consensus 143 ~g~~VLDlG~G~G~~t~~la~~~~~~~~V~avD~s~~~~~~l~~~a~~~----~nI~~~~~D~~~~~~~~~~~~~fD~V~ 218 (305)
.+.+||.++...|.++..++.. .++.+.-|--+.+.+..+++.+ .+|.+... .+ .+...+|+|+
T Consensus 38 ~~~~~~~~~d~~gal~~~~~~~-----~~~~~~ds~~~~~~~~~n~~~~~~~~~~~~~~~~--~~-----~~~~~~~~v~ 105 (375)
T 4dcm_A 38 IRGPVLILNDAFGALSCALAEH-----KPYSIGDSYISELATRENLRLNGIDESSVKFLDS--TA-----DYPQQPGVVL 105 (375)
T ss_dssp CCSCEEEECCSSSHHHHHTGGG-----CCEEEESCHHHHHHHHHHHHHTTCCGGGSEEEET--TS-----CCCSSCSEEE
T ss_pred CCCCEEEECCCCCHHHHhhccC-----CceEEEhHHHHHHHHHHHHHHcCCCccceEeccc--cc-----ccccCCCEEE
Confidence 4568999999999999988754 3455543433333344444443 12444321 11 2346899999
Q ss_pred EeCCCh-hHHHHHHHHHhccCCCCcEEEEEE
Q 021911 219 SDVAQP-DQARILALNASYFLKAGGHFVISI 248 (305)
Q Consensus 219 ~d~~~~-~~~~~l~~~a~~~LkpGG~lv~s~ 248 (305)
...|.. .........+...|+++..+++.-
T Consensus 106 ~~lpk~~~~l~~~L~~l~~~l~~~~~i~~~g 136 (375)
T 4dcm_A 106 IKVPKTLALLEQQLRALRKVVTSDTRIIAGA 136 (375)
T ss_dssp EECCSCHHHHHHHHHHHHTTCCTTSEEEEEE
T ss_pred EEcCCCHHHHHHHHHHHHhhCCCCCEEEEEe
Confidence 988843 233333337889999999997765
|
| >2j8z_A Quinone oxidoreductase; medium-chain dehydrogenase- reductases, QUIN oxidoreductase, oxidative stress response; HET: NAP; 2.50A {Homo sapiens} PDB: 2oby_A* | Back alignment and structure |
|---|
Probab=87.28 E-value=0.37 Score=43.78 Aligned_cols=97 Identities=12% Similarity=0.088 Sum_probs=57.9
Q ss_pred cCCCCCCEEEEEec--CCCccHHHHHhhhCCCcEEEEEeCChHHHHHHHHHHHcCCCeEEEEccCCCCcc---cc--cCC
Q 021911 139 IWIKPGARVLYLGA--ASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKRTNVIPIIEDARHPAK---YR--MLV 211 (305)
Q Consensus 139 ~~~~~g~~VLDlG~--G~G~~t~~la~~~~~~~~V~avD~s~~~~~~l~~~a~~~~nI~~~~~D~~~~~~---~~--~~~ 211 (305)
..++++++||-.|+ +.|..+..++...+ .+|+++|.++...+.+.+. . .. .. .|..+... .. ...
T Consensus 158 ~~~~~g~~vlV~Ga~ggiG~~~~~~a~~~G--a~Vi~~~~~~~~~~~~~~~-g--~~-~~--~~~~~~~~~~~~~~~~~~ 229 (354)
T 2j8z_A 158 GNVQAGDYVLIHAGLSGVGTAAIQLTRMAG--AIPLVTAGSQKKLQMAEKL-G--AA-AG--FNYKKEDFSEATLKFTKG 229 (354)
T ss_dssp SCCCTTCEEEESSTTSHHHHHHHHHHHHTT--CEEEEEESCHHHHHHHHHH-T--CS-EE--EETTTSCHHHHHHHHTTT
T ss_pred cCCCCCCEEEEECCccHHHHHHHHHHHHcC--CEEEEEeCCHHHHHHHHHc-C--Cc-EE--EecCChHHHHHHHHHhcC
Confidence 36788999999985 34455666666643 5899999998544333211 1 11 11 23222110 00 012
Q ss_pred CcEeEEEEeCCChhHHHHHHHHHhccCCCCcEEEEEE
Q 021911 212 GMVDVIFSDVAQPDQARILALNASYFLKAGGHFVISI 248 (305)
Q Consensus 212 ~~fD~V~~d~~~~~~~~~l~~~a~~~LkpGG~lv~s~ 248 (305)
..+|+||.+...+. +. .+.+.|+++|++++.-
T Consensus 230 ~~~d~vi~~~G~~~----~~-~~~~~l~~~G~iv~~G 261 (354)
T 2j8z_A 230 AGVNLILDCIGGSY----WE-KNVNCLALDGRWVLYG 261 (354)
T ss_dssp SCEEEEEESSCGGG----HH-HHHHHEEEEEEEEECC
T ss_pred CCceEEEECCCchH----HH-HHHHhccCCCEEEEEe
Confidence 36999998776542 33 5567899999998753
|
| >4fgs_A Probable dehydrogenase protein; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium, three layer; 1.76A {Rhizobium etli} | Back alignment and structure |
|---|
Probab=87.27 E-value=2.8 Score=36.77 Aligned_cols=102 Identities=16% Similarity=0.146 Sum_probs=65.3
Q ss_pred CCCEEEEEecCCCccHHHHHhhh-CCCcEEEEEeCChHHHHHHHHHHHcCCCeEEEEccCCCCccccc-------CCCcE
Q 021911 143 PGARVLYLGAASGTTVSHVSDIV-GPNGVVYAVEFSHRSGRDLVNMAKKRTNVIPIIEDARHPAKYRM-------LVGMV 214 (305)
Q Consensus 143 ~g~~VLDlG~G~G~~t~~la~~~-~~~~~V~avD~s~~~~~~l~~~a~~~~nI~~~~~D~~~~~~~~~-------~~~~f 214 (305)
.++.+|--|++.| ....+|..+ ....+|+.+|.++..++++++.. ..++.++++|+++...... ..+.+
T Consensus 28 ~gKvalVTGas~G-IG~aiA~~la~~Ga~V~i~~r~~~~l~~~~~~~--g~~~~~~~~Dv~~~~~v~~~~~~~~~~~G~i 104 (273)
T 4fgs_A 28 NAKIAVITGATSG-IGLAAAKRFVAEGARVFITGRRKDVLDAAIAEI--GGGAVGIQADSANLAELDRLYEKVKAEAGRI 104 (273)
T ss_dssp TTCEEEEESCSSH-HHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHH--CTTCEEEECCTTCHHHHHHHHHHHHHHHSCE
T ss_pred CCCEEEEeCcCCH-HHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHc--CCCeEEEEecCCCHHHHHHHHHHHHHHcCCC
Confidence 4678888887765 555555543 23468999999986655554433 2568889999988753221 13589
Q ss_pred eEEEEeCCC----------hh------------HHHHHHHHHhccCCCCcEEEEEE
Q 021911 215 DVIFSDVAQ----------PD------------QARILALNASYFLKAGGHFVISI 248 (305)
Q Consensus 215 D~V~~d~~~----------~~------------~~~~l~~~a~~~LkpGG~lv~s~ 248 (305)
|+++.++.. ++ ...+. +.+..+|+.+|.++...
T Consensus 105 DiLVNNAG~~~~~~~~~~~~e~w~~~~~vNl~g~~~~~-~~~~p~m~~~G~IInis 159 (273)
T 4fgs_A 105 DVLFVNAGGGSMLPLGEVTEEQYDDTFDRNVKGVLFTV-QKALPLLARGSSVVLTG 159 (273)
T ss_dssp EEEEECCCCCCCCCTTSCCHHHHHHHHHHHTHHHHHHH-HHHTTTEEEEEEEEEEC
T ss_pred CEEEECCCCCCCCChhhccHHHHHHHHHHHhHHHHHHH-HHHHHHHhhCCeEEEEe
Confidence 999987651 11 11222 24677888888877754
|
| >2eez_A Alanine dehydrogenase; TTHA0216, structural genomic NPPSFA, national project on protein structural and function analyses; 2.71A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=87.24 E-value=0.33 Score=44.59 Aligned_cols=98 Identities=20% Similarity=0.251 Sum_probs=53.4
Q ss_pred CCCEEEEEecCCCccHHHHHhhhC-CCcEEEEEeCChHHHHHHHHHHHcCCCeEEEEccCCCCcccccCCCcEeEEEEeC
Q 021911 143 PGARVLYLGAASGTTVSHVSDIVG-PNGVVYAVEFSHRSGRDLVNMAKKRTNVIPIIEDARHPAKYRMLVGMVDVIFSDV 221 (305)
Q Consensus 143 ~g~~VLDlG~G~G~~t~~la~~~~-~~~~V~avD~s~~~~~~l~~~a~~~~nI~~~~~D~~~~~~~~~~~~~fD~V~~d~ 221 (305)
++++|+-+|+ |.....+++.+. ...+|+++|.++...+.+.+... ..+. .|.............+|+|+...
T Consensus 165 ~~~~V~ViGa--G~iG~~~a~~l~~~Ga~V~~~d~~~~~~~~~~~~~g--~~~~---~~~~~~~~l~~~~~~~DvVi~~~ 237 (369)
T 2eez_A 165 APASVVILGG--GTVGTNAAKIALGMGAQVTILDVNHKRLQYLDDVFG--GRVI---TLTATEANIKKSVQHADLLIGAV 237 (369)
T ss_dssp CCCEEEEECC--SHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHTT--TSEE---EEECCHHHHHHHHHHCSEEEECC
T ss_pred CCCEEEEECC--CHHHHHHHHHHHhCCCEEEEEECCHHHHHHHHHhcC--ceEE---EecCCHHHHHHHHhCCCEEEECC
Confidence 3589999998 566666655432 22489999999855443332211 1222 22222211111124689999877
Q ss_pred CChh--HHHHHHHHHhccCCCCcEEEEE
Q 021911 222 AQPD--QARILALNASYFLKAGGHFVIS 247 (305)
Q Consensus 222 ~~~~--~~~~l~~~a~~~LkpGG~lv~s 247 (305)
+.+. ...++...+.+.+|++|.++..
T Consensus 238 g~~~~~~~~li~~~~l~~mk~gg~iV~v 265 (369)
T 2eez_A 238 LVPGAKAPKLVTRDMLSLMKEGAVIVDV 265 (369)
T ss_dssp C-------CCSCHHHHTTSCTTCEEEEC
T ss_pred CCCccccchhHHHHHHHhhcCCCEEEEE
Confidence 7543 1122223566788999987754
|
| >3is3_A 17BETA-hydroxysteroid dehydrogenase; short chain dehydrogenase/REDU SDR, fungi, oxidoreductase; HET: GOL; 1.48A {Cochliobolus lunatus} PDB: 3qwf_A* 3qwh_A* 3qwi_A* 3itd_A | Back alignment and structure |
|---|
Probab=87.11 E-value=1.7 Score=37.51 Aligned_cols=104 Identities=21% Similarity=0.254 Sum_probs=62.5
Q ss_pred CCCEEEEEecCCCccHHHHHhhhC-CCcEEEEEeCC-hHHHHHHHHHHHcC-CCeEEEEccCCCCcccccC-------CC
Q 021911 143 PGARVLYLGAASGTTVSHVSDIVG-PNGVVYAVEFS-HRSGRDLVNMAKKR-TNVIPIIEDARHPAKYRML-------VG 212 (305)
Q Consensus 143 ~g~~VLDlG~G~G~~t~~la~~~~-~~~~V~avD~s-~~~~~~l~~~a~~~-~nI~~~~~D~~~~~~~~~~-------~~ 212 (305)
.+.+||-.|++. ....++++.+- ...+|+.++.. ....+.+.+..+.. .++.++.+|+++....... .+
T Consensus 17 ~~k~~lVTGas~-gIG~aia~~l~~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~g 95 (270)
T 3is3_A 17 DGKVALVTGSGR-GIGAAVAVHLGRLGAKVVVNYANSTKDAEKVVSEIKALGSDAIAIKADIRQVPEIVKLFDQAVAHFG 95 (270)
T ss_dssp TTCEEEESCTTS-HHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHHTTCCEEEEECCTTSHHHHHHHHHHHHHHHS
T ss_pred CCCEEEEECCCc-hHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHHHhcCCcEEEEEcCCCCHHHHHHHHHHHHHHcC
Confidence 357888888654 56666665542 23578887764 44444444444433 6789999999886532111 14
Q ss_pred cEeEEEEeCCC----------hh------------HHHHHHHHHhccCCCCcEEEEEE
Q 021911 213 MVDVIFSDVAQ----------PD------------QARILALNASYFLKAGGHFVISI 248 (305)
Q Consensus 213 ~fD~V~~d~~~----------~~------------~~~~l~~~a~~~LkpGG~lv~s~ 248 (305)
.+|+++.++.. ++ ...++. .+...|+++|.+++..
T Consensus 96 ~id~lvnnAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~-~~~~~~~~~g~iv~is 152 (270)
T 3is3_A 96 HLDIAVSNSGVVSFGHLKDVTEEEFDRVFSLNTRGQFFVAR-EAYRHLTEGGRIVLTS 152 (270)
T ss_dssp CCCEEECCCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHH-HHHHHCCTTCEEEEEC
T ss_pred CCCEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHH-HHHHHHhcCCeEEEEe
Confidence 78999976651 11 111222 4666777788888765
|
| >3sju_A Keto reductase; short-chain dehydrogenase, oxidoreductase; HET: NDP; 2.40A {Streptomyces griseoruber} | Back alignment and structure |
|---|
Probab=86.91 E-value=0.9 Score=39.61 Aligned_cols=79 Identities=11% Similarity=0.091 Sum_probs=53.0
Q ss_pred CCCEEEEEecCCCccHHHHHhhh-CCCcEEEEEeCChHHHHHHHHHHHcC-CCeEEEEccCCCCcccccC-------CCc
Q 021911 143 PGARVLYLGAASGTTVSHVSDIV-GPNGVVYAVEFSHRSGRDLVNMAKKR-TNVIPIIEDARHPAKYRML-------VGM 213 (305)
Q Consensus 143 ~g~~VLDlG~G~G~~t~~la~~~-~~~~~V~avD~s~~~~~~l~~~a~~~-~nI~~~~~D~~~~~~~~~~-------~~~ 213 (305)
.+.+||-.|++. ....++++.+ ....+|+.++.++....++.+..... .++.++.+|+++....... .+.
T Consensus 23 ~~k~~lVTGas~-GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~g~ 101 (279)
T 3sju_A 23 RPQTAFVTGVSS-GIGLAVARTLAARGIAVYGCARDAKNVSAAVDGLRAAGHDVDGSSCDVTSTDEVHAAVAAAVERFGP 101 (279)
T ss_dssp --CEEEEESTTS-HHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHTTTCCEEEEECCTTCHHHHHHHHHHHHHHHCS
T ss_pred CCCEEEEeCCCC-HHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCcEEEEECCCCCHHHHHHHHHHHHHHcCC
Confidence 467888888654 5666666544 23458999999987766666655543 5799999999886532111 247
Q ss_pred EeEEEEeCC
Q 021911 214 VDVIFSDVA 222 (305)
Q Consensus 214 fD~V~~d~~ 222 (305)
+|+|+.++.
T Consensus 102 id~lv~nAg 110 (279)
T 3sju_A 102 IGILVNSAG 110 (279)
T ss_dssp CCEEEECCC
T ss_pred CcEEEECCC
Confidence 899998765
|
| >3pgx_A Carveol dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: NAD; 1.85A {Mycobacterium avium} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=86.88 E-value=1.7 Score=37.78 Aligned_cols=79 Identities=18% Similarity=0.251 Sum_probs=51.7
Q ss_pred CCCEEEEEecCCCccHHHHHhhh-CCCcEEEEEeC-------------ChHHHHHHHHHHHcC-CCeEEEEccCCCCccc
Q 021911 143 PGARVLYLGAASGTTVSHVSDIV-GPNGVVYAVEF-------------SHRSGRDLVNMAKKR-TNVIPIIEDARHPAKY 207 (305)
Q Consensus 143 ~g~~VLDlG~G~G~~t~~la~~~-~~~~~V~avD~-------------s~~~~~~l~~~a~~~-~nI~~~~~D~~~~~~~ 207 (305)
.+.+||-.|++. ....++++.+ ....+|+.+|. ++..++++.+..... .++.++.+|+++....
T Consensus 14 ~gk~~lVTGas~-gIG~a~a~~la~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v 92 (280)
T 3pgx_A 14 QGRVAFITGAAR-GQGRSHAVRLAAEGADIIACDICAPVSASVTYAPASPEDLDETARLVEDQGRKALTRVLDVRDDAAL 92 (280)
T ss_dssp TTCEEEEESTTS-HHHHHHHHHHHHTTCEEEEEECCSCCCTTCCSCCCCHHHHHHHHHHHHTTTCCEEEEECCTTCHHHH
T ss_pred CCCEEEEECCCc-HHHHHHHHHHHHCCCEEEEEeccccccccccccccCHHHHHHHHHHHHhcCCeEEEEEcCCCCHHHH
Confidence 467888888765 4566666544 23458999987 555555555554443 5789999999886532
Q ss_pred ccC-------CCcEeEEEEeCC
Q 021911 208 RML-------VGMVDVIFSDVA 222 (305)
Q Consensus 208 ~~~-------~~~fD~V~~d~~ 222 (305)
... ...+|+++.++.
T Consensus 93 ~~~~~~~~~~~g~id~lvnnAg 114 (280)
T 3pgx_A 93 RELVADGMEQFGRLDVVVANAG 114 (280)
T ss_dssp HHHHHHHHHHHCCCCEEEECCC
T ss_pred HHHHHHHHHHcCCCCEEEECCC
Confidence 211 247899998765
|
| >3ksu_A 3-oxoacyl-acyl carrier protein reductase; structural genomics, PSI-2, dehydrogenase, protein structure initiative; 2.30A {Oenococcus oeni psu-1} | Back alignment and structure |
|---|
Probab=86.80 E-value=1.4 Score=38.02 Aligned_cols=79 Identities=11% Similarity=0.114 Sum_probs=50.4
Q ss_pred CCCEEEEEecCCCccHHHHHhhhC-CCcEEEEEeCCh---HHHHHHHHHHHcC-CCeEEEEccCCCCcccccC-------
Q 021911 143 PGARVLYLGAASGTTVSHVSDIVG-PNGVVYAVEFSH---RSGRDLVNMAKKR-TNVIPIIEDARHPAKYRML------- 210 (305)
Q Consensus 143 ~g~~VLDlG~G~G~~t~~la~~~~-~~~~V~avD~s~---~~~~~l~~~a~~~-~nI~~~~~D~~~~~~~~~~------- 210 (305)
.+.+||-.|++. ....+++..+- ...+|+.++.+. ..++++.+..... .++.++.+|+++.......
T Consensus 10 ~~k~vlVTGas~-GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~ 88 (262)
T 3ksu_A 10 KNKVIVIAGGIK-NLGALTAKTFALESVNLVLHYHQAKDSDTANKLKDELEDQGAKVALYQSDLSNEEEVAKLFDFAEKE 88 (262)
T ss_dssp TTCEEEEETCSS-HHHHHHHHHHTTSSCEEEEEESCGGGHHHHHHHHHHHHTTTCEEEEEECCCCSHHHHHHHHHHHHHH
T ss_pred CCCEEEEECCCc-hHHHHHHHHHHHCCCEEEEEecCccCHHHHHHHHHHHHhcCCcEEEEECCCCCHHHHHHHHHHHHHH
Confidence 457888888664 57777776653 335788887653 2334444444333 5788999999886532211
Q ss_pred CCcEeEEEEeCC
Q 021911 211 VGMVDVIFSDVA 222 (305)
Q Consensus 211 ~~~fD~V~~d~~ 222 (305)
...+|+++.++.
T Consensus 89 ~g~iD~lvnnAg 100 (262)
T 3ksu_A 89 FGKVDIAINTVG 100 (262)
T ss_dssp HCSEEEEEECCC
T ss_pred cCCCCEEEECCC
Confidence 247999998765
|
| >3dqp_A Oxidoreductase YLBE; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; 1.40A {Lactococcus lactis subsp} | Back alignment and structure |
|---|
Probab=86.76 E-value=0.64 Score=38.62 Aligned_cols=70 Identities=14% Similarity=0.184 Sum_probs=50.5
Q ss_pred CEEEEEecCCCccHHHHHhhhCCC-cEEEEEeCChHHHHHHHHHHHcCCCeEEEEccCCC-CcccccCCCcEeEEEEeCC
Q 021911 145 ARVLYLGAASGTTVSHVSDIVGPN-GVVYAVEFSHRSGRDLVNMAKKRTNVIPIIEDARH-PAKYRMLVGMVDVIFSDVA 222 (305)
Q Consensus 145 ~~VLDlG~G~G~~t~~la~~~~~~-~~V~avD~s~~~~~~l~~~a~~~~nI~~~~~D~~~-~~~~~~~~~~fD~V~~d~~ 222 (305)
++||-.| |+|....++++.+-.. .+|++++-++.. .....+++++.+|+.+ ..........+|+||..+.
T Consensus 1 M~ilItG-atG~iG~~l~~~L~~~g~~V~~~~R~~~~-------~~~~~~~~~~~~D~~d~~~~~~~~~~~~d~vi~~ag 72 (219)
T 3dqp_A 1 MKIFIVG-STGRVGKSLLKSLSTTDYQIYAGARKVEQ-------VPQYNNVKAVHFDVDWTPEEMAKQLHGMDAIINVSG 72 (219)
T ss_dssp CEEEEES-TTSHHHHHHHHHHTTSSCEEEEEESSGGG-------SCCCTTEEEEECCTTSCHHHHHTTTTTCSEEEECCC
T ss_pred CeEEEEC-CCCHHHHHHHHHHHHCCCEEEEEECCccc-------hhhcCCceEEEecccCCHHHHHHHHcCCCEEEECCc
Confidence 3677776 5788999998876433 589999988732 1112689999999998 5544444567999998776
|
| >3r3s_A Oxidoreductase; structural genomics, csgid, center for structural genomics O infectious diseases, 3-layer(ABA) sandwich, rossmann fold; HET: NAD; 1.25A {Salmonella enterica subsp} | Back alignment and structure |
|---|
Probab=86.71 E-value=1.8 Score=38.00 Aligned_cols=104 Identities=12% Similarity=0.110 Sum_probs=62.5
Q ss_pred CCCEEEEEecCCCccHHHHHhhhC-CCcEEEEEeCCh--HHHHHHHHHHHcC-CCeEEEEccCCCCcccccC-------C
Q 021911 143 PGARVLYLGAASGTTVSHVSDIVG-PNGVVYAVEFSH--RSGRDLVNMAKKR-TNVIPIIEDARHPAKYRML-------V 211 (305)
Q Consensus 143 ~g~~VLDlG~G~G~~t~~la~~~~-~~~~V~avD~s~--~~~~~l~~~a~~~-~nI~~~~~D~~~~~~~~~~-------~ 211 (305)
.+.+||-.|++ +....++++.+- ...+|+.++.+. .....+.+..++. .++.++.+|+.+....... .
T Consensus 48 ~~k~vlVTGas-~GIG~aia~~la~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~ 126 (294)
T 3r3s_A 48 KDRKALVTGGD-SGIGRAAAIAYAREGADVAINYLPAEEEDAQQVKALIEECGRKAVLLPGDLSDESFARSLVHKAREAL 126 (294)
T ss_dssp TTCEEEEETTT-SHHHHHHHHHHHHTTCEEEEECCGGGHHHHHHHHHHHHHTTCCEEECCCCTTSHHHHHHHHHHHHHHH
T ss_pred CCCEEEEeCCC-cHHHHHHHHHHHHCCCEEEEEeCCcchhHHHHHHHHHHHcCCcEEEEEecCCCHHHHHHHHHHHHHHc
Confidence 35788888865 556666666542 235788888762 2333333333332 5788999999886432111 2
Q ss_pred CcEeEEEEeCCC-----------hh------------HHHHHHHHHhccCCCCcEEEEEE
Q 021911 212 GMVDVIFSDVAQ-----------PD------------QARILALNASYFLKAGGHFVISI 248 (305)
Q Consensus 212 ~~fD~V~~d~~~-----------~~------------~~~~l~~~a~~~LkpGG~lv~s~ 248 (305)
+.+|+++.+... ++ ...++. .+...|+.+|.+++..
T Consensus 127 g~iD~lv~nAg~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~-~~~~~~~~~g~Iv~is 185 (294)
T 3r3s_A 127 GGLDILALVAGKQTAIPEIKDLTSEQFQQTFAVNVFALFWITQ-EAIPLLPKGASIITTS 185 (294)
T ss_dssp TCCCEEEECCCCCCCCSSGGGCCHHHHHHHHHHHTHHHHHHHH-HHGGGCCTTCEEEEEC
T ss_pred CCCCEEEECCCCcCCCCCcccCCHHHHHHHHHHHhHHHHHHHH-HHHHHhhcCCEEEEEC
Confidence 478999986651 01 112222 4667788888888765
|
| >3sx2_A Putative 3-ketoacyl-(acyl-carrier-protein) reduct; ssgcid, 3-ketoacyl-(acyl-carrier-protein) reductase, mycobac paratuberculosis; HET: NAD; 1.50A {Mycobacterium avium subsp} | Back alignment and structure |
|---|
Probab=86.70 E-value=1.3 Score=38.34 Aligned_cols=79 Identities=14% Similarity=0.217 Sum_probs=50.7
Q ss_pred CCCEEEEEecCCCccHHHHHhhh-CCCcEEEEEeCC------------hHHHHHHHHHHHc-CCCeEEEEccCCCCcccc
Q 021911 143 PGARVLYLGAASGTTVSHVSDIV-GPNGVVYAVEFS------------HRSGRDLVNMAKK-RTNVIPIIEDARHPAKYR 208 (305)
Q Consensus 143 ~g~~VLDlG~G~G~~t~~la~~~-~~~~~V~avD~s------------~~~~~~l~~~a~~-~~nI~~~~~D~~~~~~~~ 208 (305)
.+.+||-.|+. +....++++.+ ....+|+.+|.+ +..+..+.+.... ..++.++.+|+++.....
T Consensus 12 ~gk~vlVTGas-~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~ 90 (278)
T 3sx2_A 12 TGKVAFITGAA-RGQGRAHAVRLAADGADIIAVDLCDQIASVPYPLATPEELAATVKLVEDIGSRIVARQADVRDRESLS 90 (278)
T ss_dssp TTCEEEEESTT-SHHHHHHHHHHHHTTCEEEEEECCSCCTTCSSCCCCHHHHHHHHHHHHHHTCCEEEEECCTTCHHHHH
T ss_pred CCCEEEEECCC-ChHHHHHHHHHHHCCCeEEEEecccccccccccccchHHHHHHHHHHHhcCCeEEEEeCCCCCHHHHH
Confidence 46788888865 45666666554 234589999976 4444444433332 268999999998875432
Q ss_pred cC-------CCcEeEEEEeCC
Q 021911 209 ML-------VGMVDVIFSDVA 222 (305)
Q Consensus 209 ~~-------~~~fD~V~~d~~ 222 (305)
.. .+.+|+++.++.
T Consensus 91 ~~~~~~~~~~g~id~lv~nAg 111 (278)
T 3sx2_A 91 AALQAGLDELGRLDIVVANAG 111 (278)
T ss_dssp HHHHHHHHHHCCCCEEEECCC
T ss_pred HHHHHHHHHcCCCCEEEECCC
Confidence 11 147899998765
|
| >2gn4_A FLAA1 protein, UDP-GLCNAC C6 dehydratase; rossmann fold, TYK triad, SDR, enzyme, NADP, NADPH, lyase; HET: NDP UD1 MES; 1.90A {Helicobacter pylori} PDB: 2gn6_A* 2gn8_A* 2gn9_A* 2gna_A* | Back alignment and structure |
|---|
Probab=86.62 E-value=0.92 Score=40.87 Aligned_cols=78 Identities=14% Similarity=0.119 Sum_probs=54.3
Q ss_pred CCCEEEEEecCCCccHHHHHhhhCC--Cc-EEEEEeCChHHHHHHHHHHHcCCCeEEEEccCCCCcccccCCCcEeEEEE
Q 021911 143 PGARVLYLGAASGTTVSHVSDIVGP--NG-VVYAVEFSHRSGRDLVNMAKKRTNVIPIIEDARHPAKYRMLVGMVDVIFS 219 (305)
Q Consensus 143 ~g~~VLDlG~G~G~~t~~la~~~~~--~~-~V~avD~s~~~~~~l~~~a~~~~nI~~~~~D~~~~~~~~~~~~~fD~V~~ 219 (305)
.+++||-.| |+|....++++.+-. .. +|++++.++.....+.+... ..++.++.+|+++..........+|+||.
T Consensus 20 ~~k~vlVTG-atG~iG~~l~~~L~~~~g~~~V~~~~r~~~~~~~~~~~~~-~~~v~~~~~Dl~d~~~l~~~~~~~D~Vih 97 (344)
T 2gn4_A 20 DNQTILITG-GTGSFGKCFVRKVLDTTNAKKIIVYSRDELKQSEMAMEFN-DPRMRFFIGDVRDLERLNYALEGVDICIH 97 (344)
T ss_dssp TTCEEEEET-TTSHHHHHHHHHHHHHCCCSEEEEEESCHHHHHHHHHHHC-CTTEEEEECCTTCHHHHHHHTTTCSEEEE
T ss_pred CCCEEEEEC-CCcHHHHHHHHHHHhhCCCCEEEEEECChhhHHHHHHHhc-CCCEEEEECCCCCHHHHHHHHhcCCEEEE
Confidence 357888776 578888888876532 23 89999998755444443332 25799999999887644333457899998
Q ss_pred eCC
Q 021911 220 DVA 222 (305)
Q Consensus 220 d~~ 222 (305)
.+.
T Consensus 98 ~Aa 100 (344)
T 2gn4_A 98 AAA 100 (344)
T ss_dssp CCC
T ss_pred CCC
Confidence 776
|
| >3krt_A Crotonyl COA reductase; structural genomics, protein structure initiative, NYSGXRC, PSI-2; 2.19A {Streptomyces coelicolor} PDB: 3hzz_A | Back alignment and structure |
|---|
Probab=86.55 E-value=1 Score=42.41 Aligned_cols=98 Identities=17% Similarity=0.197 Sum_probs=58.4
Q ss_pred cCCCCCCEEEEEec--CCCccHHHHHhhhCCCcEEEEEeCChHHHHHHHHHHHcCCCeEEEEccCCCC------------
Q 021911 139 IWIKPGARVLYLGA--ASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKRTNVIPIIEDARHP------------ 204 (305)
Q Consensus 139 ~~~~~g~~VLDlG~--G~G~~t~~la~~~~~~~~V~avD~s~~~~~~l~~~a~~~~nI~~~~~D~~~~------------ 204 (305)
..++++++||-+|+ +.|..+..+|...+ .+|++++.++...+. +++..--.++...-.+.
T Consensus 224 ~~~~~g~~VlV~GasG~vG~~avqlak~~G--a~vi~~~~~~~~~~~----~~~lGa~~vi~~~~~d~~~~~~~~~~~~~ 297 (456)
T 3krt_A 224 AGMKQGDNVLIWGASGGLGSYATQFALAGG--ANPICVVSSPQKAEI----CRAMGAEAIIDRNAEGYRFWKDENTQDPK 297 (456)
T ss_dssp TCCCTTCEEEETTTTSHHHHHHHHHHHHTT--CEEEEEESSHHHHHH----HHHHTCCEEEETTTTTCCSEEETTEECHH
T ss_pred cCCCCCCEEEEECCCCHHHHHHHHHHHHcC--CeEEEEECCHHHHHH----HHhhCCcEEEecCcCcccccccccccchH
Confidence 36789999999987 34667777887754 589999988744333 32221111221111110
Q ss_pred ------cccc--cCCCcEeEEEEeCCChhHHHHHHHHHhccCCCCcEEEEE
Q 021911 205 ------AKYR--MLVGMVDVIFSDVAQPDQARILALNASYFLKAGGHFVIS 247 (305)
Q Consensus 205 ------~~~~--~~~~~fD~V~~d~~~~~~~~~l~~~a~~~LkpGG~lv~s 247 (305)
.... .....+|+||-.... ..+. .+.++|+++|++++.
T Consensus 298 ~~~~~~~~i~~~t~g~g~Dvvid~~G~----~~~~-~~~~~l~~~G~iv~~ 343 (456)
T 3krt_A 298 EWKRFGKRIRELTGGEDIDIVFEHPGR----ETFG-ASVFVTRKGGTITTC 343 (456)
T ss_dssp HHHHHHHHHHHHHTSCCEEEEEECSCH----HHHH-HHHHHEEEEEEEEES
T ss_pred HHHHHHHHHHHHhCCCCCcEEEEcCCc----hhHH-HHHHHhhCCcEEEEE
Confidence 0000 012479999866553 2444 677899999999874
|
| >3ioy_A Short-chain dehydrogenase/reductase SDR; structural genomics, oxidoreductase, PSI-2, protein structure initiative; 1.90A {Novosphingobium aromaticivorans DSM12444} | Back alignment and structure |
|---|
Probab=86.39 E-value=1.8 Score=38.50 Aligned_cols=79 Identities=13% Similarity=0.175 Sum_probs=53.6
Q ss_pred CCCEEEEEecCCCccHHHHHhhh-CCCcEEEEEeCChHHHHHHHHHHHcC---CCeEEEEccCCCCccccc-------CC
Q 021911 143 PGARVLYLGAASGTTVSHVSDIV-GPNGVVYAVEFSHRSGRDLVNMAKKR---TNVIPIIEDARHPAKYRM-------LV 211 (305)
Q Consensus 143 ~g~~VLDlG~G~G~~t~~la~~~-~~~~~V~avD~s~~~~~~l~~~a~~~---~nI~~~~~D~~~~~~~~~-------~~ 211 (305)
.+.+||-.|+.. ....+++..+ ....+|+.++.++....++.+..... .++.++.+|+++...... ..
T Consensus 7 ~~k~vlVTGas~-gIG~~la~~l~~~G~~Vv~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dl~~~~~v~~~~~~~~~~~ 85 (319)
T 3ioy_A 7 AGRTAFVTGGAN-GVGIGLVRQLLNQGCKVAIADIRQDSIDKALATLEAEGSGPEVMGVQLDVASREGFKMAADEVEARF 85 (319)
T ss_dssp TTCEEEEETTTS-THHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHHTCGGGEEEEECCTTCHHHHHHHHHHHHHHT
T ss_pred CCCEEEEcCCch-HHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCCCeEEEEECCCCCHHHHHHHHHHHHHhC
Confidence 357888888764 5666666554 23458999999987666665554432 278999999988653211 12
Q ss_pred CcEeEEEEeCC
Q 021911 212 GMVDVIFSDVA 222 (305)
Q Consensus 212 ~~fD~V~~d~~ 222 (305)
..+|+||.++.
T Consensus 86 g~id~lv~nAg 96 (319)
T 3ioy_A 86 GPVSILCNNAG 96 (319)
T ss_dssp CCEEEEEECCC
T ss_pred CCCCEEEECCC
Confidence 57899998775
|
| >2cdc_A Glucose dehydrogenase glucose 1-dehydrogenase, DHG-1; reductase, oxidoreductase, MDR family; HET: XYS XYP NAP; 1.50A {Sulfolobus solfataricus} PDB: 2cdb_A* 2cd9_A 2cda_A* | Back alignment and structure |
|---|
Probab=86.29 E-value=0.59 Score=42.55 Aligned_cols=91 Identities=16% Similarity=0.149 Sum_probs=54.4
Q ss_pred CCEEEEEecCC-CccHHHHHhhhCCCcEEEEEeCCh---HHHHHHHHHHHcCCCeEEEEccCCC-Ccc-cccCCCcEeEE
Q 021911 144 GARVLYLGAAS-GTTVSHVSDIVGPNGVVYAVEFSH---RSGRDLVNMAKKRTNVIPIIEDARH-PAK-YRMLVGMVDVI 217 (305)
Q Consensus 144 g~~VLDlG~G~-G~~t~~la~~~~~~~~V~avD~s~---~~~~~l~~~a~~~~nI~~~~~D~~~-~~~-~~~~~~~fD~V 217 (305)
+++||-+|+|. |..+..++...+ .+|+++|.++ ...+.+ +.. ....+ | .+ ... .......+|+|
T Consensus 181 g~~VlV~GaG~vG~~~~q~a~~~G--a~Vi~~~~~~~~~~~~~~~-~~~----ga~~v--~-~~~~~~~~~~~~~~~d~v 250 (366)
T 2cdc_A 181 CRKVLVVGTGPIGVLFTLLFRTYG--LEVWMANRREPTEVEQTVI-EET----KTNYY--N-SSNGYDKLKDSVGKFDVI 250 (366)
T ss_dssp TCEEEEESCHHHHHHHHHHHHHHT--CEEEEEESSCCCHHHHHHH-HHH----TCEEE--E-CTTCSHHHHHHHCCEEEE
T ss_pred CCEEEEECCCHHHHHHHHHHHhCC--CEEEEEeCCccchHHHHHH-HHh----CCcee--c-hHHHHHHHHHhCCCCCEE
Confidence 99999999832 445566666654 4899999986 543222 211 12222 3 22 111 00001469999
Q ss_pred EEeCCChhHHHHHHHHHhccCCCCcEEEEE
Q 021911 218 FSDVAQPDQARILALNASYFLKAGGHFVIS 247 (305)
Q Consensus 218 ~~d~~~~~~~~~l~~~a~~~LkpGG~lv~s 247 (305)
|.....+... +. .+.+.|+++|++++.
T Consensus 251 id~~g~~~~~--~~-~~~~~l~~~G~iv~~ 277 (366)
T 2cdc_A 251 IDATGADVNI--LG-NVIPLLGRNGVLGLF 277 (366)
T ss_dssp EECCCCCTHH--HH-HHGGGEEEEEEEEEC
T ss_pred EECCCChHHH--HH-HHHHHHhcCCEEEEE
Confidence 9877754321 03 667899999998875
|
| >2vn8_A Reticulon-4-interacting protein 1; mitochondrion, transit peptide, receptor inhibitor; HET: NDP CIT; 2.1A {Homo sapiens} | Back alignment and structure |
|---|
Probab=86.25 E-value=1.9 Score=39.30 Aligned_cols=97 Identities=23% Similarity=0.153 Sum_probs=56.2
Q ss_pred CCCCCEEEEEec--CCCccHHHHHhhhCCCcEEEEEeCChHHHHHHHHHHHcCCCeEEEEccCCCCcccccCCCcEeEEE
Q 021911 141 IKPGARVLYLGA--ASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKRTNVIPIIEDARHPAKYRMLVGMVDVIF 218 (305)
Q Consensus 141 ~~~g~~VLDlG~--G~G~~t~~la~~~~~~~~V~avD~s~~~~~~l~~~a~~~~nI~~~~~D~~~~~~~~~~~~~fD~V~ 218 (305)
++++++||-+|+ +.|..+..+|...+ .+|++++ ++... +.+++..--..+..+-.+....-.....+|+||
T Consensus 181 ~~~g~~VlV~Ga~G~vG~~~~qla~~~G--a~Vi~~~-~~~~~----~~~~~lGa~~v~~~~~~~~~~~~~~~~g~D~vi 253 (375)
T 2vn8_A 181 NCTGKRVLILGASGGVGTFAIQVMKAWD--AHVTAVC-SQDAS----ELVRKLGADDVIDYKSGSVEEQLKSLKPFDFIL 253 (375)
T ss_dssp TCTTCEEEEETTTSHHHHHHHHHHHHTT--CEEEEEE-CGGGH----HHHHHTTCSEEEETTSSCHHHHHHTSCCBSEEE
T ss_pred cCCCCEEEEECCCCHHHHHHHHHHHhCC--CEEEEEe-ChHHH----HHHHHcCCCEEEECCchHHHHHHhhcCCCCEEE
Confidence 778999999984 34556777777754 5899998 65332 233332111122111111111000124699999
Q ss_pred EeCCChhHHHHHHHHHhccCCCCcEEEEE
Q 021911 219 SDVAQPDQARILALNASYFLKAGGHFVIS 247 (305)
Q Consensus 219 ~d~~~~~~~~~l~~~a~~~LkpGG~lv~s 247 (305)
-....+.. .+. .+.+.|+++|+++..
T Consensus 254 d~~g~~~~--~~~-~~~~~l~~~G~iv~~ 279 (375)
T 2vn8_A 254 DNVGGSTE--TWA-PDFLKKWSGATYVTL 279 (375)
T ss_dssp ESSCTTHH--HHG-GGGBCSSSCCEEEES
T ss_pred ECCCChhh--hhH-HHHHhhcCCcEEEEe
Confidence 77665422 233 677899999999875
|
| >4e6p_A Probable sorbitol dehydrogenase (L-iditol 2-dehyd; NAD(P)-binding, structural genomics, PSI-biology; HET: MSE; 2.10A {Sinorhizobium meliloti} PDB: 1k2w_A | Back alignment and structure |
|---|
Probab=86.18 E-value=1.8 Score=37.10 Aligned_cols=77 Identities=13% Similarity=0.162 Sum_probs=51.4
Q ss_pred CCCEEEEEecCCCccHHHHHhhh-CCCcEEEEEeCChHHHHHHHHHHHcCCCeEEEEccCCCCccccc-------CCCcE
Q 021911 143 PGARVLYLGAASGTTVSHVSDIV-GPNGVVYAVEFSHRSGRDLVNMAKKRTNVIPIIEDARHPAKYRM-------LVGMV 214 (305)
Q Consensus 143 ~g~~VLDlG~G~G~~t~~la~~~-~~~~~V~avD~s~~~~~~l~~~a~~~~nI~~~~~D~~~~~~~~~-------~~~~f 214 (305)
.+.+||-.|++ +....++++.+ ....+|+.+|.++...+++.+.. ..++.++.+|+++...... ..+.+
T Consensus 7 ~~k~vlVTGas-~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~--~~~~~~~~~D~~~~~~v~~~~~~~~~~~g~i 83 (259)
T 4e6p_A 7 EGKSALITGSA-RGIGRAFAEAYVREGATVAIADIDIERARQAAAEI--GPAAYAVQMDVTRQDSIDAAIAATVEHAGGL 83 (259)
T ss_dssp TTCEEEEETCS-SHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHH--CTTEEEEECCTTCHHHHHHHHHHHHHHSSSC
T ss_pred CCCEEEEECCC-cHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHh--CCCceEEEeeCCCHHHHHHHHHHHHHHcCCC
Confidence 35788888855 55666666654 23458999999986555544433 3578899999988653221 12478
Q ss_pred eEEEEeCC
Q 021911 215 DVIFSDVA 222 (305)
Q Consensus 215 D~V~~d~~ 222 (305)
|+|+.++.
T Consensus 84 d~lv~~Ag 91 (259)
T 4e6p_A 84 DILVNNAA 91 (259)
T ss_dssp CEEEECCC
T ss_pred CEEEECCC
Confidence 99998765
|
| >3qvo_A NMRA family protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, unknown function; HET: MNB; 2.30A {Shigella flexneri 2A} | Back alignment and structure |
|---|
Probab=85.91 E-value=0.92 Score=38.28 Aligned_cols=75 Identities=20% Similarity=0.202 Sum_probs=50.8
Q ss_pred CEEEEEecCCCccHHHHHhhhCCC--cEEEEEeCChHHHHHHHHHHHcCCCeEEEEccCCCCcccccCCCcEeEEEEeCC
Q 021911 145 ARVLYLGAASGTTVSHVSDIVGPN--GVVYAVEFSHRSGRDLVNMAKKRTNVIPIIEDARHPAKYRMLVGMVDVIFSDVA 222 (305)
Q Consensus 145 ~~VLDlG~G~G~~t~~la~~~~~~--~~V~avD~s~~~~~~l~~~a~~~~nI~~~~~D~~~~~~~~~~~~~fD~V~~d~~ 222 (305)
++||-.| |+|....++++.+-.. .+|++++.++.... .. ...++.++.+|+++..........+|+||.+..
T Consensus 24 k~vlVtG-atG~iG~~l~~~L~~~G~~~V~~~~R~~~~~~----~~-~~~~~~~~~~Dl~d~~~~~~~~~~~D~vv~~a~ 97 (236)
T 3qvo_A 24 KNVLILG-AGGQIARHVINQLADKQTIKQTLFARQPAKIH----KP-YPTNSQIIMGDVLNHAALKQAMQGQDIVYANLT 97 (236)
T ss_dssp EEEEEET-TTSHHHHHHHHHHTTCTTEEEEEEESSGGGSC----SS-CCTTEEEEECCTTCHHHHHHHHTTCSEEEEECC
T ss_pred cEEEEEe-CCcHHHHHHHHHHHhCCCceEEEEEcChhhhc----cc-ccCCcEEEEecCCCHHHHHHHhcCCCEEEEcCC
Confidence 4566655 5788888888876544 48999998873211 11 125799999999887654333457899998877
Q ss_pred Chh
Q 021911 223 QPD 225 (305)
Q Consensus 223 ~~~ 225 (305)
...
T Consensus 98 ~~~ 100 (236)
T 3qvo_A 98 GED 100 (236)
T ss_dssp STT
T ss_pred CCc
Confidence 544
|
| >4egf_A L-xylulose reductase; structural genomics, ssgcid, seattle structural genomics CEN infectious disease, oxidoreductase; 2.30A {Mycobacterium smegmatis} | Back alignment and structure |
|---|
Probab=85.90 E-value=1.7 Score=37.56 Aligned_cols=79 Identities=16% Similarity=0.160 Sum_probs=53.0
Q ss_pred CCCEEEEEecCCCccHHHHHhhhC-CCcEEEEEeCChHHHHHHHHHHHc--CCCeEEEEccCCCCcccccC-------CC
Q 021911 143 PGARVLYLGAASGTTVSHVSDIVG-PNGVVYAVEFSHRSGRDLVNMAKK--RTNVIPIIEDARHPAKYRML-------VG 212 (305)
Q Consensus 143 ~g~~VLDlG~G~G~~t~~la~~~~-~~~~V~avD~s~~~~~~l~~~a~~--~~nI~~~~~D~~~~~~~~~~-------~~ 212 (305)
.+.+||-.|++. ....++++.+- ...+|+.++.++....++.+...+ ..++.++.+|+++....... ..
T Consensus 19 ~~k~vlVTGas~-gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~g 97 (266)
T 4egf_A 19 DGKRALITGATK-GIGADIARAFAAAGARLVLSGRDVSELDAARRALGEQFGTDVHTVAIDLAEPDAPAELARRAAEAFG 97 (266)
T ss_dssp TTCEEEETTTTS-HHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHHHCCCEEEEECCTTSTTHHHHHHHHHHHHHT
T ss_pred CCCEEEEeCCCc-HHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHHhcCCcEEEEEecCCCHHHHHHHHHHHHHHcC
Confidence 357788777654 56666665542 345899999998766665555443 36799999999887542211 14
Q ss_pred cEeEEEEeCC
Q 021911 213 MVDVIFSDVA 222 (305)
Q Consensus 213 ~fD~V~~d~~ 222 (305)
.+|+++.++.
T Consensus 98 ~id~lv~nAg 107 (266)
T 4egf_A 98 GLDVLVNNAG 107 (266)
T ss_dssp SCSEEEEECC
T ss_pred CCCEEEECCC
Confidence 7899998765
|
| >4f6c_A AUSA reductase domain protein; thioester reductase, oxidoreductase; 2.81A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=85.89 E-value=5 Score=36.92 Aligned_cols=78 Identities=18% Similarity=0.142 Sum_probs=50.2
Q ss_pred CCCEEEEEecCCCccHHHHHhhhCCC-cEEEEEeCChH---HHHHHHHHHHc----------CCCeEEEEccCCCCcccc
Q 021911 143 PGARVLYLGAASGTTVSHVSDIVGPN-GVVYAVEFSHR---SGRDLVNMAKK----------RTNVIPIIEDARHPAKYR 208 (305)
Q Consensus 143 ~g~~VLDlG~G~G~~t~~la~~~~~~-~~V~avD~s~~---~~~~l~~~a~~----------~~nI~~~~~D~~~~~~~~ 208 (305)
+.++||-.| |+|....+++..+-.. .+|++++.++. ....+.+..+. ..++.++.+|+.+.....
T Consensus 68 ~~~~vlVTG-atG~iG~~l~~~L~~~g~~V~~~~R~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~v~~v~~Dl~d~~~l~ 146 (427)
T 4f6c_A 68 PLGNTLLTG-ATGFLGAYLIEALQGYSHRIYCFIRADNEEIAWYKLMTNLNDYFSEETVEMMLSNIEVIVGDFECMDDVV 146 (427)
T ss_dssp CCEEEEEEC-TTSHHHHHHHHHHTTTEEEEEEEEECSSHHHHHHHHHHHHHHHSCHHHHHHHHTTEEEEEECC---CCCC
T ss_pred CCCEEEEec-CCcHHHHHHHHHHHcCCCEEEEEECCCChHHHHHHHHHHHHHhccccccccccCceEEEeCCCCCcccCC
Confidence 345788777 5788899998876433 47999987764 22232222211 268999999998865443
Q ss_pred cCCCcEeEEEEeCC
Q 021911 209 MLVGMVDVIFSDVA 222 (305)
Q Consensus 209 ~~~~~fD~V~~d~~ 222 (305)
....+|+|+.++.
T Consensus 147 -~~~~~d~Vih~A~ 159 (427)
T 4f6c_A 147 -LPENMDTIIHAGA 159 (427)
T ss_dssp -CSSCCSEEEECCC
T ss_pred -CcCCCCEEEECCc
Confidence 4568999998665
|
| >3qiv_A Short-chain dehydrogenase or 3-oxoacyl-[acyl-CARR protein] reductase; structural genomics; 2.25A {Mycobacterium avium subsp} | Back alignment and structure |
|---|
Probab=85.88 E-value=0.93 Score=38.58 Aligned_cols=79 Identities=11% Similarity=0.227 Sum_probs=53.9
Q ss_pred CCCEEEEEecCCCccHHHHHhhhC-CCcEEEEEeCChHHHHHHHHHHHcC-CCeEEEEccCCCCcccccC-------CCc
Q 021911 143 PGARVLYLGAASGTTVSHVSDIVG-PNGVVYAVEFSHRSGRDLVNMAKKR-TNVIPIIEDARHPAKYRML-------VGM 213 (305)
Q Consensus 143 ~g~~VLDlG~G~G~~t~~la~~~~-~~~~V~avD~s~~~~~~l~~~a~~~-~nI~~~~~D~~~~~~~~~~-------~~~ 213 (305)
.+.+||-.|+. +....++++.+- ...+|+.+|.++.....+.+..... .++.++.+|+++....... ...
T Consensus 8 ~~k~vlITGas-~giG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~g~ 86 (253)
T 3qiv_A 8 ENKVGIVTGSG-GGIGQAYAEALAREGAAVVVADINAEAAEAVAKQIVADGGTAISVAVDVSDPESAKAMADRTLAEFGG 86 (253)
T ss_dssp TTCEEEEETTT-SHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCEEEEEECCTTSHHHHHHHHHHHHHHHSC
T ss_pred CCCEEEEECCC-ChHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHHHhcCCcEEEEEccCCCHHHHHHHHHHHHHHcCC
Confidence 35788888865 556666666542 3458999999987766666655443 5788999999886532211 137
Q ss_pred EeEEEEeCC
Q 021911 214 VDVIFSDVA 222 (305)
Q Consensus 214 fD~V~~d~~ 222 (305)
+|+|+.++.
T Consensus 87 id~li~~Ag 95 (253)
T 3qiv_A 87 IDYLVNNAA 95 (253)
T ss_dssp CCEEEECCC
T ss_pred CCEEEECCC
Confidence 899998764
|
| >3tqh_A Quinone oxidoreductase; HET: NDP; 2.44A {Coxiella burnetii} | Back alignment and structure |
|---|
Probab=85.85 E-value=1.2 Score=39.69 Aligned_cols=97 Identities=20% Similarity=0.126 Sum_probs=57.9
Q ss_pred cccCCCCCCEEEEEe-cC-CCccHHHHHhhhCCCcEEEEEeCChHHHHHHHHHHHcCCCeEEEEccCCCCcccccCCCcE
Q 021911 137 DNIWIKPGARVLYLG-AA-SGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKRTNVIPIIEDARHPAKYRMLVGMV 214 (305)
Q Consensus 137 ~~~~~~~g~~VLDlG-~G-~G~~t~~la~~~~~~~~V~avD~s~~~~~~l~~~a~~~~nI~~~~~D~~~~~~~~~~~~~f 214 (305)
+...++++++||-+| +| .|..+..+|+..+ .+|++++ ++.. ++.+++..--..+ |..+..........+
T Consensus 146 ~~~~~~~g~~vlV~Ga~G~vG~~a~q~a~~~G--a~vi~~~-~~~~----~~~~~~lGa~~~i--~~~~~~~~~~~~~g~ 216 (321)
T 3tqh_A 146 NQAEVKQGDVVLIHAGAGGVGHLAIQLAKQKG--TTVITTA-SKRN----HAFLKALGAEQCI--NYHEEDFLLAISTPV 216 (321)
T ss_dssp HHTTCCTTCEEEESSTTSHHHHHHHHHHHHTT--CEEEEEE-CHHH----HHHHHHHTCSEEE--ETTTSCHHHHCCSCE
T ss_pred HhcCCCCCCEEEEEcCCcHHHHHHHHHHHHcC--CEEEEEe-ccch----HHHHHHcCCCEEE--eCCCcchhhhhccCC
Confidence 344788999999986 33 4667778888764 4899887 4432 2333332111222 222221011112579
Q ss_pred eEEEEeCCChhHHHHHHHHHhccCCCCcEEEEE
Q 021911 215 DVIFSDVAQPDQARILALNASYFLKAGGHFVIS 247 (305)
Q Consensus 215 D~V~~d~~~~~~~~~l~~~a~~~LkpGG~lv~s 247 (305)
|+||-....+. +. .+.++|+++|+++..
T Consensus 217 D~v~d~~g~~~----~~-~~~~~l~~~G~iv~~ 244 (321)
T 3tqh_A 217 DAVIDLVGGDV----GI-QSIDCLKETGCIVSV 244 (321)
T ss_dssp EEEEESSCHHH----HH-HHGGGEEEEEEEEEC
T ss_pred CEEEECCCcHH----HH-HHHHhccCCCEEEEe
Confidence 99987655332 23 677899999999875
|
| >3oec_A Carveol dehydrogenase (mytha.01326.C, A0R518 HOMO; ssgcid, structural genomics; 1.95A {Mycobacterium thermoresistibile} | Back alignment and structure |
|---|
Probab=85.29 E-value=2.3 Score=37.81 Aligned_cols=79 Identities=18% Similarity=0.287 Sum_probs=50.6
Q ss_pred CCCEEEEEecCCCccHHHHHhhh-CCCcEEEEEeCC------------hHHHHHHHHHHHcC-CCeEEEEccCCCCcccc
Q 021911 143 PGARVLYLGAASGTTVSHVSDIV-GPNGVVYAVEFS------------HRSGRDLVNMAKKR-TNVIPIIEDARHPAKYR 208 (305)
Q Consensus 143 ~g~~VLDlG~G~G~~t~~la~~~-~~~~~V~avD~s------------~~~~~~l~~~a~~~-~nI~~~~~D~~~~~~~~ 208 (305)
.+.+||-.|++. ....+++..+ ....+|+.+|.+ +..+.++.+..... .++.++.+|+++.....
T Consensus 45 ~gk~~lVTGas~-GIG~aia~~la~~G~~Vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~ 123 (317)
T 3oec_A 45 QGKVAFITGAAR-GQGRTHAVRLAQDGADIVAIDLCRQQPNLDYAQGSPEELKETVRLVEEQGRRIIARQADVRDLASLQ 123 (317)
T ss_dssp TTCEEEESSCSS-HHHHHHHHHHHHTTCEEEEEECCCCCTTCCSCCCCHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHH
T ss_pred CCCEEEEeCCCc-HHHHHHHHHHHHCCCeEEEEecccccccccccccCHHHHHHHHHHHHhcCCeEEEEECCCCCHHHHH
Confidence 457888888654 4566666544 234589999876 44444444444333 57899999998865322
Q ss_pred cC-------CCcEeEEEEeCC
Q 021911 209 ML-------VGMVDVIFSDVA 222 (305)
Q Consensus 209 ~~-------~~~fD~V~~d~~ 222 (305)
.. ...+|+||.++.
T Consensus 124 ~~~~~~~~~~g~iD~lVnnAg 144 (317)
T 3oec_A 124 AVVDEALAEFGHIDILVSNVG 144 (317)
T ss_dssp HHHHHHHHHHSCCCEEEECCC
T ss_pred HHHHHHHHHcCCCCEEEECCC
Confidence 11 147899998765
|
| >1sny_A Sniffer CG10964-PA; alpha and beta protein, rossmann fold, dinucleotide binding oxidoreductase; HET: NAP; 1.75A {Drosophila melanogaster} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=85.17 E-value=0.87 Score=39.00 Aligned_cols=79 Identities=16% Similarity=0.219 Sum_probs=51.6
Q ss_pred CCCEEEEEecCCCccHHHHHhhhCC-C---cEEEEEeCChHHHHHHHHHHHcCCCeEEEEccCCCCcccccCCC------
Q 021911 143 PGARVLYLGAASGTTVSHVSDIVGP-N---GVVYAVEFSHRSGRDLVNMAKKRTNVIPIIEDARHPAKYRMLVG------ 212 (305)
Q Consensus 143 ~g~~VLDlG~G~G~~t~~la~~~~~-~---~~V~avD~s~~~~~~l~~~a~~~~nI~~~~~D~~~~~~~~~~~~------ 212 (305)
.+.+||-.|+ +|....++++.+-. . .+|+.++.++.....+.+......++.++.+|+++.........
T Consensus 20 ~~k~vlITGa-sggIG~~la~~L~~~G~~~~~V~~~~r~~~~~~~~~~l~~~~~~~~~~~~Dl~~~~~v~~~~~~~~~~~ 98 (267)
T 1sny_A 20 HMNSILITGC-NRGLGLGLVKALLNLPQPPQHLFTTCRNREQAKELEDLAKNHSNIHILEIDLRNFDAYDKLVADIEGVT 98 (267)
T ss_dssp CCSEEEESCC-SSHHHHHHHHHHHTSSSCCSEEEEEESCTTSCHHHHHHHHHCTTEEEEECCTTCGGGHHHHHHHHHHHH
T ss_pred CCCEEEEECC-CCcHHHHHHHHHHhcCCCCcEEEEEecChhhhHHHHHhhccCCceEEEEecCCChHHHHHHHHHHHHhc
Confidence 3567887775 56778888876532 2 58999988764433333333334679999999988754321111
Q ss_pred ---cEeEEEEeCC
Q 021911 213 ---MVDVIFSDVA 222 (305)
Q Consensus 213 ---~fD~V~~d~~ 222 (305)
.+|+||.++.
T Consensus 99 g~~~id~li~~Ag 111 (267)
T 1sny_A 99 KDQGLNVLFNNAG 111 (267)
T ss_dssp GGGCCSEEEECCC
T ss_pred CCCCccEEEECCC
Confidence 6899998664
|
| >3rkr_A Short chain oxidoreductase; rossmann fold; HET: NAP; 2.42A {Uncultured bacterium BIO5} | Back alignment and structure |
|---|
Probab=85.14 E-value=0.83 Score=39.33 Aligned_cols=79 Identities=13% Similarity=0.083 Sum_probs=54.0
Q ss_pred CCCEEEEEecCCCccHHHHHhhh-CCCcEEEEEeCChHHHHHHHHHHHcC-CCeEEEEccCCCCcccccC-------CCc
Q 021911 143 PGARVLYLGAASGTTVSHVSDIV-GPNGVVYAVEFSHRSGRDLVNMAKKR-TNVIPIIEDARHPAKYRML-------VGM 213 (305)
Q Consensus 143 ~g~~VLDlG~G~G~~t~~la~~~-~~~~~V~avD~s~~~~~~l~~~a~~~-~nI~~~~~D~~~~~~~~~~-------~~~ 213 (305)
.+.+||-.|+. +....+++..+ ....+|+.++.++...+.+.+..... .++.++.+|+++....... ...
T Consensus 28 ~~k~vlITGas-~gIG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~g~ 106 (262)
T 3rkr_A 28 SGQVAVVTGAS-RGIGAAIARKLGSLGARVVLTARDVEKLRAVEREIVAAGGEAESHACDLSHSDAIAAFATGVLAAHGR 106 (262)
T ss_dssp TTCEEEESSTT-SHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCEEEEEECCTTCHHHHHHHHHHHHHHHSC
T ss_pred CCCEEEEECCC-ChHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHhCCceeEEEecCCCHHHHHHHHHHHHHhcCC
Confidence 46788888865 56777777654 23458999999987766666555443 5788999999887532111 146
Q ss_pred EeEEEEeCC
Q 021911 214 VDVIFSDVA 222 (305)
Q Consensus 214 fD~V~~d~~ 222 (305)
+|+|+.++.
T Consensus 107 id~lv~~Ag 115 (262)
T 3rkr_A 107 CDVLVNNAG 115 (262)
T ss_dssp CSEEEECCC
T ss_pred CCEEEECCC
Confidence 899998765
|
| >3ucx_A Short chain dehydrogenase; ssgcid, seattle structural genomics center for infectious DI dehydrogenase, oxidoreductase; HET: 1PE; 1.85A {Mycobacterium smegmatis} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=85.02 E-value=1.7 Score=37.38 Aligned_cols=78 Identities=12% Similarity=0.125 Sum_probs=53.6
Q ss_pred CCCEEEEEecCCCccHHHHHhhh-CCCcEEEEEeCChHHHHHHHHHHHcC-CCeEEEEccCCCCccccc-------CCCc
Q 021911 143 PGARVLYLGAASGTTVSHVSDIV-GPNGVVYAVEFSHRSGRDLVNMAKKR-TNVIPIIEDARHPAKYRM-------LVGM 213 (305)
Q Consensus 143 ~g~~VLDlG~G~G~~t~~la~~~-~~~~~V~avD~s~~~~~~l~~~a~~~-~nI~~~~~D~~~~~~~~~-------~~~~ 213 (305)
.+.+||-.|++.| ...+++..+ ....+|+.++.++..++++.+..... .++.++.+|+++...... ....
T Consensus 10 ~~k~vlVTGas~g-IG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~g~ 88 (264)
T 3ucx_A 10 TDKVVVISGVGPA-LGTTLARRCAEQGADLVLAARTVERLEDVAKQVTDTGRRALSVGTDITDDAQVAHLVDETMKAYGR 88 (264)
T ss_dssp TTCEEEEESCCTT-HHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHHHTSC
T ss_pred CCcEEEEECCCcH-HHHHHHHHHHHCcCEEEEEeCCHHHHHHHHHHHHhcCCcEEEEEcCCCCHHHHHHHHHHHHHHcCC
Confidence 4678888887655 555555543 23458999999987766666655443 579999999988753221 1247
Q ss_pred EeEEEEeC
Q 021911 214 VDVIFSDV 221 (305)
Q Consensus 214 fD~V~~d~ 221 (305)
+|+++.++
T Consensus 89 id~lv~nA 96 (264)
T 3ucx_A 89 VDVVINNA 96 (264)
T ss_dssp CSEEEECC
T ss_pred CcEEEECC
Confidence 89999876
|
| >2yut_A Putative short-chain oxidoreductase; alpha and beta proteins (A/B), NAD(P)-binding rossmann-fold structural genomics, NPPSFA; HET: NAP; 2.20A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=84.99 E-value=1.4 Score=36.01 Aligned_cols=71 Identities=17% Similarity=0.178 Sum_probs=48.9
Q ss_pred EEEEEecCCCccHHHHHhhhCCCcEEEEEeCChHHHHHHHHHHHcCCCeEEEEccCCCCcccccCC---CcEeEEEEeCC
Q 021911 146 RVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKRTNVIPIIEDARHPAKYRMLV---GMVDVIFSDVA 222 (305)
Q Consensus 146 ~VLDlG~G~G~~t~~la~~~~~~~~V~avD~s~~~~~~l~~~a~~~~nI~~~~~D~~~~~~~~~~~---~~fD~V~~d~~ 222 (305)
+||-.| ++|....++++.+-.. +|++++.++.....+.+... . .++.+|+++........ ..+|+|+.++.
T Consensus 2 ~vlVtG-asg~iG~~la~~l~~~-~V~~~~r~~~~~~~~~~~~~---~-~~~~~D~~~~~~~~~~~~~~~~id~vi~~ag 75 (207)
T 2yut_A 2 RVLITG-ATGGLGGAFARALKGH-DLLLSGRRAGALAELAREVG---A-RALPADLADELEAKALLEEAGPLDLLVHAVG 75 (207)
T ss_dssp EEEEET-TTSHHHHHHHHHTTTS-EEEEECSCHHHHHHHHHHHT---C-EECCCCTTSHHHHHHHHHHHCSEEEEEECCC
T ss_pred EEEEEc-CCcHHHHHHHHHHHhC-CEEEEECCHHHHHHHHHhcc---C-cEEEeeCCCHHHHHHHHHhcCCCCEEEECCC
Confidence 466666 5778899999887666 99999998855444443332 2 78889998765432222 37999998664
|
| >3ggo_A Prephenate dehydrogenase; TYRA, HPP, NADH, alpha-beta, oxidoreductase; HET: NAI ENO; 2.15A {Aquifex aeolicus} PDB: 3ggg_D* 3ggp_A* | Back alignment and structure |
|---|
Probab=84.68 E-value=2.8 Score=37.40 Aligned_cols=88 Identities=15% Similarity=0.092 Sum_probs=53.1
Q ss_pred CEEEEEecCCCccHHHHHhhhCC---CcEEEEEeCChHHHHHHHHHHHcCCCeEEEEccCCCCcccccCCCcEeEEEEeC
Q 021911 145 ARVLYLGAASGTTVSHVSDIVGP---NGVVYAVEFSHRSGRDLVNMAKKRTNVIPIIEDARHPAKYRMLVGMVDVIFSDV 221 (305)
Q Consensus 145 ~~VLDlG~G~G~~t~~la~~~~~---~~~V~avD~s~~~~~~l~~~a~~~~nI~~~~~D~~~~~~~~~~~~~fD~V~~d~ 221 (305)
++|.-||+ |.....+|..+.. ..+|+++|.++..++ .+.+..-+.....|..+. .....|+||..+
T Consensus 34 ~kI~IIG~--G~mG~slA~~l~~~G~~~~V~~~dr~~~~~~----~a~~~G~~~~~~~~~~~~-----~~~~aDvVilav 102 (314)
T 3ggo_A 34 QNVLIVGV--GFMGGSFAKSLRRSGFKGKIYGYDINPESIS----KAVDLGIIDEGTTSIAKV-----EDFSPDFVMLSS 102 (314)
T ss_dssp SEEEEESC--SHHHHHHHHHHHHTTCCSEEEEECSCHHHHH----HHHHTTSCSEEESCTTGG-----GGGCCSEEEECS
T ss_pred CEEEEEee--CHHHHHHHHHHHhCCCCCEEEEEECCHHHHH----HHHHCCCcchhcCCHHHH-----hhccCCEEEEeC
Confidence 68888875 5666666654421 227999999984433 333332221122232210 124689999988
Q ss_pred CChhHHHHHHHHHhccCCCCcEE
Q 021911 222 AQPDQARILALNASYFLKAGGHF 244 (305)
Q Consensus 222 ~~~~~~~~l~~~a~~~LkpGG~l 244 (305)
|.....+++. .+...|+++-.+
T Consensus 103 p~~~~~~vl~-~l~~~l~~~~iv 124 (314)
T 3ggo_A 103 PVRTFREIAK-KLSYILSEDATV 124 (314)
T ss_dssp CGGGHHHHHH-HHHHHSCTTCEE
T ss_pred CHHHHHHHHH-HHhhccCCCcEE
Confidence 8766666676 778889988543
|
| >3tfo_A Putative 3-oxoacyl-(acyl-carrier-protein) reducta; structural genomics, PSI-biology, NEW YORK structural genomi research consortium; 2.08A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=84.40 E-value=2 Score=37.17 Aligned_cols=78 Identities=9% Similarity=0.108 Sum_probs=52.2
Q ss_pred CCEEEEEecCCCccHHHHHhhh-CCCcEEEEEeCChHHHHHHHHHHHcC-CCeEEEEccCCCCcccccC-------CCcE
Q 021911 144 GARVLYLGAASGTTVSHVSDIV-GPNGVVYAVEFSHRSGRDLVNMAKKR-TNVIPIIEDARHPAKYRML-------VGMV 214 (305)
Q Consensus 144 g~~VLDlG~G~G~~t~~la~~~-~~~~~V~avD~s~~~~~~l~~~a~~~-~nI~~~~~D~~~~~~~~~~-------~~~f 214 (305)
+.+||-.|++. ....++++.+ ....+|+.++.++..++++.+..... .++.++.+|+++....... .+.+
T Consensus 4 ~k~~lVTGas~-GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~g~i 82 (264)
T 3tfo_A 4 DKVILITGASG-GIGEGIARELGVAGAKILLGARRQARIEAIATEIRDAGGTALAQVLDVTDRHSVAAFAQAAVDTWGRI 82 (264)
T ss_dssp TCEEEESSTTS-HHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHHHTTCEEEEEECCTTCHHHHHHHHHHHHHHHSCC
T ss_pred CCEEEEeCCcc-HHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCcEEEEEcCCCCHHHHHHHHHHHHHHcCCC
Confidence 46777777654 5666666544 23458999999987766666555443 5688899999886532211 2478
Q ss_pred eEEEEeCC
Q 021911 215 DVIFSDVA 222 (305)
Q Consensus 215 D~V~~d~~ 222 (305)
|+++.++.
T Consensus 83 D~lVnnAG 90 (264)
T 3tfo_A 83 DVLVNNAG 90 (264)
T ss_dssp CEEEECCC
T ss_pred CEEEECCC
Confidence 99998764
|
| >3awd_A GOX2181, putative polyol dehydrogenase; oxidoreductase; 1.80A {Gluconobacter oxydans} | Back alignment and structure |
|---|
Probab=84.08 E-value=1.6 Score=37.07 Aligned_cols=79 Identities=10% Similarity=0.137 Sum_probs=52.6
Q ss_pred CCCEEEEEecCCCccHHHHHhhhC-CCcEEEEEeCChHHHHHHHHHHHcC-CCeEEEEccCCCCcccccC-------CCc
Q 021911 143 PGARVLYLGAASGTTVSHVSDIVG-PNGVVYAVEFSHRSGRDLVNMAKKR-TNVIPIIEDARHPAKYRML-------VGM 213 (305)
Q Consensus 143 ~g~~VLDlG~G~G~~t~~la~~~~-~~~~V~avD~s~~~~~~l~~~a~~~-~nI~~~~~D~~~~~~~~~~-------~~~ 213 (305)
.+.+||-.|+ +|....++++.+- ...+|+.++.++.....+.+..+.. .++.++.+|+++....... ...
T Consensus 12 ~~k~vlItGa-sggiG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~ 90 (260)
T 3awd_A 12 DNRVAIVTGG-AQNIGLACVTALAEAGARVIIADLDEAMATKAVEDLRMEGHDVSSVVMDVTNTESVQNAVRSVHEQEGR 90 (260)
T ss_dssp TTCEEEEETT-TSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHHHHSC
T ss_pred CCCEEEEeCC-CchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCceEEEEecCCCHHHHHHHHHHHHHHcCC
Confidence 3578888775 5667777776542 3458999999876655555544433 5799999999886532211 136
Q ss_pred EeEEEEeCC
Q 021911 214 VDVIFSDVA 222 (305)
Q Consensus 214 fD~V~~d~~ 222 (305)
+|+|+.++.
T Consensus 91 id~vi~~Ag 99 (260)
T 3awd_A 91 VDILVACAG 99 (260)
T ss_dssp CCEEEECCC
T ss_pred CCEEEECCC
Confidence 899998654
|
| >1fmc_A 7 alpha-hydroxysteroid dehydrogenase; short-chain dehydrogenase/reductase, bIle acid catabolism, oxidoreductase; HET: CHO NAD; 1.80A {Escherichia coli} SCOP: c.2.1.2 PDB: 1ahi_A* 1ahh_A* | Back alignment and structure |
|---|
Probab=84.05 E-value=1.5 Score=37.12 Aligned_cols=79 Identities=13% Similarity=0.203 Sum_probs=53.0
Q ss_pred CCCEEEEEecCCCccHHHHHhhh-CCCcEEEEEeCChHHHHHHHHHHHcC-CCeEEEEccCCCCcccccC-------CCc
Q 021911 143 PGARVLYLGAASGTTVSHVSDIV-GPNGVVYAVEFSHRSGRDLVNMAKKR-TNVIPIIEDARHPAKYRML-------VGM 213 (305)
Q Consensus 143 ~g~~VLDlG~G~G~~t~~la~~~-~~~~~V~avD~s~~~~~~l~~~a~~~-~nI~~~~~D~~~~~~~~~~-------~~~ 213 (305)
.+++||-.| |+|....++++.+ ....+|++++.++.....+.+..+.. .++.++.+|+++....... ...
T Consensus 10 ~~~~vlVtG-asggiG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~ 88 (255)
T 1fmc_A 10 DGKCAIITG-AGAGIGKEIAITFATAGASVVVSDINADAANHVVDEIQQLGGQAFACRCDITSEQELSALADFAISKLGK 88 (255)
T ss_dssp TTCEEEETT-TTSHHHHHHHHHHHTTTCEEEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHHHHSS
T ss_pred CCCEEEEEC-CccHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHHHHhCCceEEEEcCCCCHHHHHHHHHHHHHhcCC
Confidence 356788777 4577777777654 23458999999986665555544433 5788999999876533211 137
Q ss_pred EeEEEEeCC
Q 021911 214 VDVIFSDVA 222 (305)
Q Consensus 214 fD~V~~d~~ 222 (305)
+|+|+.++.
T Consensus 89 ~d~vi~~Ag 97 (255)
T 1fmc_A 89 VDILVNNAG 97 (255)
T ss_dssp CCEEEECCC
T ss_pred CCEEEECCC
Confidence 899998664
|
| >3h7a_A Short chain dehydrogenase; oxidoreductase, PSI-2, NYSGXRC, structural genomics, protein structure initiative; 1.87A {Rhodopseudomonas palustris} | Back alignment and structure |
|---|
Probab=83.86 E-value=1.4 Score=37.83 Aligned_cols=79 Identities=16% Similarity=0.156 Sum_probs=53.7
Q ss_pred CCCEEEEEecCCCccHHHHHhhh-CCCcEEEEEeCChHHHHHHHHHHHcC-CCeEEEEccCCCCcccccCC------CcE
Q 021911 143 PGARVLYLGAASGTTVSHVSDIV-GPNGVVYAVEFSHRSGRDLVNMAKKR-TNVIPIIEDARHPAKYRMLV------GMV 214 (305)
Q Consensus 143 ~g~~VLDlG~G~G~~t~~la~~~-~~~~~V~avD~s~~~~~~l~~~a~~~-~nI~~~~~D~~~~~~~~~~~------~~f 214 (305)
.+.+||-.|++. ....++++.+ ....+|+.++.++..++++.+..+.. .++.++.+|+++........ ..+
T Consensus 6 ~~k~vlVTGas~-GIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~g~i 84 (252)
T 3h7a_A 6 RNATVAVIGAGD-YIGAEIAKKFAAEGFTVFAGRRNGEKLAPLVAEIEAAGGRIVARSLDARNEDEVTAFLNAADAHAPL 84 (252)
T ss_dssp CSCEEEEECCSS-HHHHHHHHHHHHTTCEEEEEESSGGGGHHHHHHHHHTTCEEEEEECCTTCHHHHHHHHHHHHHHSCE
T ss_pred CCCEEEEECCCc-hHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCeEEEEECcCCCHHHHHHHHHHHHhhCCc
Confidence 357888888765 4566666544 22458999999987666666655543 57899999998875432111 478
Q ss_pred eEEEEeCC
Q 021911 215 DVIFSDVA 222 (305)
Q Consensus 215 D~V~~d~~ 222 (305)
|+++.++.
T Consensus 85 d~lv~nAg 92 (252)
T 3h7a_A 85 EVTIFNVG 92 (252)
T ss_dssp EEEEECCC
T ss_pred eEEEECCC
Confidence 99998765
|
| >3ftp_A 3-oxoacyl-[acyl-carrier protein] reductase; ssgcid, 3-ketoacyl-(acyl-carrier- protein) reductase, oxidoreductase, structural genomics; 2.05A {Burkholderia pseudomallei} | Back alignment and structure |
|---|
Probab=83.76 E-value=1.7 Score=37.63 Aligned_cols=79 Identities=9% Similarity=0.090 Sum_probs=51.9
Q ss_pred CCCEEEEEecCCCccHHHHHhhh-CCCcEEEEEeCChHHHHHHHHHHHcC-CCeEEEEccCCCCcccccC-------CCc
Q 021911 143 PGARVLYLGAASGTTVSHVSDIV-GPNGVVYAVEFSHRSGRDLVNMAKKR-TNVIPIIEDARHPAKYRML-------VGM 213 (305)
Q Consensus 143 ~g~~VLDlG~G~G~~t~~la~~~-~~~~~V~avD~s~~~~~~l~~~a~~~-~nI~~~~~D~~~~~~~~~~-------~~~ 213 (305)
.+.+||-.|++ +....++++.+ ....+|+.++.++...+++.+..... .++.++.+|+++....... .+.
T Consensus 27 ~~k~~lVTGas-~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~g~ 105 (270)
T 3ftp_A 27 DKQVAIVTGAS-RGIGRAIALELARRGAMVIGTATTEAGAEGIGAAFKQAGLEGRGAVLNVNDATAVDALVESTLKEFGA 105 (270)
T ss_dssp TTCEEEETTCS-SHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHHHHTCCCEEEECCTTCHHHHHHHHHHHHHHHSC
T ss_pred CCCEEEEECCC-CHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCcEEEEEEeCCCHHHHHHHHHHHHHHcCC
Confidence 35677777754 45666666544 23458999999986666655554432 5788999999886532211 147
Q ss_pred EeEEEEeCC
Q 021911 214 VDVIFSDVA 222 (305)
Q Consensus 214 fD~V~~d~~ 222 (305)
+|+|+.++.
T Consensus 106 iD~lvnnAg 114 (270)
T 3ftp_A 106 LNVLVNNAG 114 (270)
T ss_dssp CCEEEECCC
T ss_pred CCEEEECCC
Confidence 899998765
|
| >3u5t_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.40A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=83.45 E-value=1.9 Score=37.24 Aligned_cols=79 Identities=16% Similarity=0.199 Sum_probs=47.8
Q ss_pred CCCEEEEEecCCCccHHHHHhhhC-CCcEEEEEe-CChHHHHHHHHHHHcC-CCeEEEEccCCCCcccccC-------CC
Q 021911 143 PGARVLYLGAASGTTVSHVSDIVG-PNGVVYAVE-FSHRSGRDLVNMAKKR-TNVIPIIEDARHPAKYRML-------VG 212 (305)
Q Consensus 143 ~g~~VLDlG~G~G~~t~~la~~~~-~~~~V~avD-~s~~~~~~l~~~a~~~-~nI~~~~~D~~~~~~~~~~-------~~ 212 (305)
.+.+||-.|++.| ...+++..+- ...+|+.++ .++...+.+.+..... .++.++.+|+++....... ..
T Consensus 26 ~~k~~lVTGas~G-IG~aia~~la~~G~~Vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~v~~~~~~~~~~~g 104 (267)
T 3u5t_A 26 TNKVAIVTGASRG-IGAAIAARLASDGFTVVINYAGKAAAAEEVAGKIEAAGGKALTAQADVSDPAAVRRLFATAEEAFG 104 (267)
T ss_dssp -CCEEEEESCSSH-HHHHHHHHHHHHTCEEEEEESSCSHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHHHHS
T ss_pred CCCEEEEeCCCCH-HHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHHHhcCCeEEEEEcCCCCHHHHHHHHHHHHHHcC
Confidence 4678888887654 5555554431 234777764 3444444444444433 5789999999886532211 24
Q ss_pred cEeEEEEeCC
Q 021911 213 MVDVIFSDVA 222 (305)
Q Consensus 213 ~fD~V~~d~~ 222 (305)
.+|+++.++.
T Consensus 105 ~iD~lvnnAG 114 (267)
T 3u5t_A 105 GVDVLVNNAG 114 (267)
T ss_dssp CEEEEEECCC
T ss_pred CCCEEEECCC
Confidence 7999998775
|
| >1ae1_A Tropinone reductase-I; oxidoreductase, tropane alkaloid biosynthesis, reduction of tropinone to tropine, short-chain dehydrogenase; HET: NAP; 2.40A {Datura stramonium} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=83.38 E-value=2.3 Score=36.78 Aligned_cols=79 Identities=13% Similarity=0.203 Sum_probs=52.9
Q ss_pred CCCEEEEEecCCCccHHHHHhhhC-CCcEEEEEeCChHHHHHHHHHHHcC-CCeEEEEccCCCCcccccC-------C-C
Q 021911 143 PGARVLYLGAASGTTVSHVSDIVG-PNGVVYAVEFSHRSGRDLVNMAKKR-TNVIPIIEDARHPAKYRML-------V-G 212 (305)
Q Consensus 143 ~g~~VLDlG~G~G~~t~~la~~~~-~~~~V~avD~s~~~~~~l~~~a~~~-~nI~~~~~D~~~~~~~~~~-------~-~ 212 (305)
.+.+||-.|+. +....++++.+- ...+|+.++.++...+++.+..... .++.++.+|+.+....... . .
T Consensus 20 ~~k~vlVTGas-~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~g 98 (273)
T 1ae1_A 20 KGTTALVTGGS-KGIGYAIVEELAGLGARVYTCSRNEKELDECLEIWREKGLNVEGSVCDLLSRTERDKLMQTVAHVFDG 98 (273)
T ss_dssp TTCEEEEESCS-SHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHHHTTS
T ss_pred CCCEEEEECCc-chHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCceEEEECCCCCHHHHHHHHHHHHHHcCC
Confidence 35788888864 556666666542 3458999999986665555544432 5788999999886532211 1 5
Q ss_pred cEeEEEEeCC
Q 021911 213 MVDVIFSDVA 222 (305)
Q Consensus 213 ~fD~V~~d~~ 222 (305)
.+|+|+.++.
T Consensus 99 ~id~lv~nAg 108 (273)
T 1ae1_A 99 KLNILVNNAG 108 (273)
T ss_dssp CCCEEEECCC
T ss_pred CCcEEEECCC
Confidence 7899998764
|
| >3gvc_A Oxidoreductase, probable short-chain type dehydrogenase/reductase; ssgcid, decode, niaid, UWPPG, SBRI, structural genomics; 2.45A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=83.36 E-value=2.6 Score=36.70 Aligned_cols=77 Identities=12% Similarity=0.116 Sum_probs=50.3
Q ss_pred CCCEEEEEecCCCccHHHHHhhh-CCCcEEEEEeCChHHHHHHHHHHHcCCCeEEEEccCCCCcccccC-------CCcE
Q 021911 143 PGARVLYLGAASGTTVSHVSDIV-GPNGVVYAVEFSHRSGRDLVNMAKKRTNVIPIIEDARHPAKYRML-------VGMV 214 (305)
Q Consensus 143 ~g~~VLDlG~G~G~~t~~la~~~-~~~~~V~avD~s~~~~~~l~~~a~~~~nI~~~~~D~~~~~~~~~~-------~~~f 214 (305)
.+.+||-.|++. ....+++..+ ....+|+.+|.++...+++.+.. ..++.++.+|+++....... .+.+
T Consensus 28 ~gk~vlVTGas~-gIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~~--~~~~~~~~~Dv~d~~~v~~~~~~~~~~~g~i 104 (277)
T 3gvc_A 28 AGKVAIVTGAGA-GIGLAVARRLADEGCHVLCADIDGDAADAAATKI--GCGAAACRVDVSDEQQIIAMVDACVAAFGGV 104 (277)
T ss_dssp TTCEEEETTTTS-THHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHH--CSSCEEEECCTTCHHHHHHHHHHHHHHHSSC
T ss_pred CCCEEEEECCCc-HHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHc--CCcceEEEecCCCHHHHHHHHHHHHHHcCCC
Confidence 357788878655 4556665543 23458999999986555544433 35788999999887532111 2478
Q ss_pred eEEEEeCC
Q 021911 215 DVIFSDVA 222 (305)
Q Consensus 215 D~V~~d~~ 222 (305)
|+|+.++.
T Consensus 105 D~lvnnAg 112 (277)
T 3gvc_A 105 DKLVANAG 112 (277)
T ss_dssp CEEEECCC
T ss_pred CEEEECCC
Confidence 99998765
|
| >3tsc_A Putative oxidoreductase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, nucleotide; HET: NAD; 2.05A {Mycobacterium avium subsp} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=83.22 E-value=2.6 Score=36.40 Aligned_cols=79 Identities=18% Similarity=0.276 Sum_probs=50.8
Q ss_pred CCCEEEEEecCCCccHHHHHhhh-CCCcEEEEEeC-------------ChHHHHHHHHHHHcC-CCeEEEEccCCCCccc
Q 021911 143 PGARVLYLGAASGTTVSHVSDIV-GPNGVVYAVEF-------------SHRSGRDLVNMAKKR-TNVIPIIEDARHPAKY 207 (305)
Q Consensus 143 ~g~~VLDlG~G~G~~t~~la~~~-~~~~~V~avD~-------------s~~~~~~l~~~a~~~-~nI~~~~~D~~~~~~~ 207 (305)
.+.+||-.|++. ....+++..+ ....+|+.+|. ++..+.++.+..... .++.++.+|+.+....
T Consensus 10 ~~k~~lVTGas~-GIG~a~a~~la~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v 88 (277)
T 3tsc_A 10 EGRVAFITGAAR-GQGRAHAVRMAAEGADIIAVDIAGKLPSCVPYDPASPDDLSETVRLVEAANRRIVAAVVDTRDFDRL 88 (277)
T ss_dssp TTCEEEEESTTS-HHHHHHHHHHHHTTCEEEEEECCSCCCTTCCSCCCCHHHHHHHHHHHHHTTCCEEEEECCTTCHHHH
T ss_pred CCCEEEEECCcc-HHHHHHHHHHHHcCCEEEEEeccccccccccccccCHHHHHHHHHHHHhcCCeEEEEECCCCCHHHH
Confidence 467888888665 4555665543 23458999988 555555554444433 6789999999886532
Q ss_pred ccC-------CCcEeEEEEeCC
Q 021911 208 RML-------VGMVDVIFSDVA 222 (305)
Q Consensus 208 ~~~-------~~~fD~V~~d~~ 222 (305)
... ...+|+++.++.
T Consensus 89 ~~~~~~~~~~~g~id~lvnnAg 110 (277)
T 3tsc_A 89 RKVVDDGVAALGRLDIIVANAG 110 (277)
T ss_dssp HHHHHHHHHHHSCCCEEEECCC
T ss_pred HHHHHHHHHHcCCCCEEEECCC
Confidence 211 146899998765
|
| >3ged_A Short-chain dehydrogenase/reductase SDR; SCOR, rossmann fold, oxidoreductase; 1.70A {Clostridium thermocellum atcc 27405} PDB: 3geg_A* | Back alignment and structure |
|---|
Probab=83.22 E-value=4 Score=35.19 Aligned_cols=74 Identities=16% Similarity=0.273 Sum_probs=48.9
Q ss_pred CEEEEEecCCCccHHHHHhhh-CCCcEEEEEeCChHHHHHHHHHHHcCCCeEEEEccCCCCccccc-------CCCcEeE
Q 021911 145 ARVLYLGAASGTTVSHVSDIV-GPNGVVYAVEFSHRSGRDLVNMAKKRTNVIPIIEDARHPAKYRM-------LVGMVDV 216 (305)
Q Consensus 145 ~~VLDlG~G~G~~t~~la~~~-~~~~~V~avD~s~~~~~~l~~~a~~~~nI~~~~~D~~~~~~~~~-------~~~~fD~ 216 (305)
++||--|++.| ....+|..+ ....+|+.+|.++.. +.+.+++..++.++++|+++...... ..+.+|+
T Consensus 3 K~vlVTGas~G-IG~aia~~la~~Ga~V~~~~~~~~~---~~~~~~~~~~~~~~~~Dv~~~~~v~~~v~~~~~~~g~iDi 78 (247)
T 3ged_A 3 RGVIVTGGGHG-IGKQICLDFLEAGDKVCFIDIDEKR---SADFAKERPNLFYFHGDVADPLTLKKFVEYAMEKLQRIDV 78 (247)
T ss_dssp CEEEEESTTSH-HHHHHHHHHHHTTCEEEEEESCHHH---HHHHHTTCTTEEEEECCTTSHHHHHHHHHHHHHHHSCCCE
T ss_pred CEEEEecCCCH-HHHHHHHHHHHCCCEEEEEeCCHHH---HHHHHHhcCCEEEEEecCCCHHHHHHHHHHHHHHcCCCCE
Confidence 57887787665 455555443 234689999999843 33344445789999999988653211 1258999
Q ss_pred EEEeCC
Q 021911 217 IFSDVA 222 (305)
Q Consensus 217 V~~d~~ 222 (305)
++.++.
T Consensus 79 LVNNAG 84 (247)
T 3ged_A 79 LVNNAC 84 (247)
T ss_dssp EEECCC
T ss_pred EEECCC
Confidence 998774
|
| >3lf2_A Short chain oxidoreductase Q9HYA2; SDR, SCOR, rossmann fold; HET: NAP; 2.30A {Pseudomonas aeruginosa} PDB: 3lf1_A* | Back alignment and structure |
|---|
Probab=82.98 E-value=3.7 Score=35.19 Aligned_cols=79 Identities=10% Similarity=0.112 Sum_probs=52.6
Q ss_pred CCCEEEEEecCCCccHHHHHhhh-CCCcEEEEEeCChHHHHHHHHHHHc-C--CCeEEEEccCCCCccccc-------CC
Q 021911 143 PGARVLYLGAASGTTVSHVSDIV-GPNGVVYAVEFSHRSGRDLVNMAKK-R--TNVIPIIEDARHPAKYRM-------LV 211 (305)
Q Consensus 143 ~g~~VLDlG~G~G~~t~~la~~~-~~~~~V~avD~s~~~~~~l~~~a~~-~--~nI~~~~~D~~~~~~~~~-------~~ 211 (305)
.+.+||-.|++. ....++++.+ ....+|+.++.++...+++.+.... . .++.++.+|+++...... ..
T Consensus 7 ~~k~~lVTGas~-GIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~ 85 (265)
T 3lf2_A 7 SEAVAVVTGGSS-GIGLATVELLLEAGAAVAFCARDGERLRAAESALRQRFPGARLFASVCDVLDALQVRAFAEACERTL 85 (265)
T ss_dssp TTCEEEEETCSS-HHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHHSTTCCEEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred CCCEEEEeCCCC-hHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHHhcCCceEEEEeCCCCCHHHHHHHHHHHHHHc
Confidence 357888888665 4666666544 2345899999998766666655544 2 358999999988653211 12
Q ss_pred CcEeEEEEeCC
Q 021911 212 GMVDVIFSDVA 222 (305)
Q Consensus 212 ~~fD~V~~d~~ 222 (305)
..+|+++.++.
T Consensus 86 g~id~lvnnAg 96 (265)
T 3lf2_A 86 GCASILVNNAG 96 (265)
T ss_dssp CSCSEEEECCC
T ss_pred CCCCEEEECCC
Confidence 47899998765
|
| >1gee_A Glucose 1-dehydrogenase; short-chain dehydrogenase/reductase, oxidoreductase; HET: NAD; 1.60A {Bacillus megaterium} SCOP: c.2.1.2 PDB: 1rwb_A* 1gco_A* 1g6k_A* 3aus_A 3aut_A* 3auu_A* | Back alignment and structure |
|---|
Probab=82.93 E-value=1.8 Score=36.76 Aligned_cols=78 Identities=17% Similarity=0.162 Sum_probs=50.0
Q ss_pred CCEEEEEecCCCccHHHHHhhhC-CCcEEEEEeC-ChHHHHHHHHHHHcC-CCeEEEEccCCCCcccccC-------CCc
Q 021911 144 GARVLYLGAASGTTVSHVSDIVG-PNGVVYAVEF-SHRSGRDLVNMAKKR-TNVIPIIEDARHPAKYRML-------VGM 213 (305)
Q Consensus 144 g~~VLDlG~G~G~~t~~la~~~~-~~~~V~avD~-s~~~~~~l~~~a~~~-~nI~~~~~D~~~~~~~~~~-------~~~ 213 (305)
+.+||-.|+ +|....++++.+- ...+|+.++. ++.....+.+..... .++.++.+|+++....... ...
T Consensus 7 ~k~vlITGa-sggiG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~g~ 85 (261)
T 1gee_A 7 GKVVVITGS-STGLGKSMAIRFATEKAKVVVNYRSKEDEANSVLEEIKKVGGEAIAVKGDVTVESDVINLVQSAIKEFGK 85 (261)
T ss_dssp TCEEEETTC-SSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHHTTCEEEEEECCTTSHHHHHHHHHHHHHHHSC
T ss_pred CCEEEEeCC-CChHHHHHHHHHHHCCCEEEEEcCCChHHHHHHHHHHHhcCCceEEEECCCCCHHHHHHHHHHHHHHcCC
Confidence 567887775 5667777776542 3458999998 665554544444332 5688899999876532111 137
Q ss_pred EeEEEEeCC
Q 021911 214 VDVIFSDVA 222 (305)
Q Consensus 214 fD~V~~d~~ 222 (305)
+|+||.++.
T Consensus 86 id~li~~Ag 94 (261)
T 1gee_A 86 LDVMINNAG 94 (261)
T ss_dssp CCEEEECCC
T ss_pred CCEEEECCC
Confidence 899998664
|
| >3trk_A Nonstructural polyprotein; hydrolase; 2.40A {Chikungunya virus} | Back alignment and structure |
|---|
Probab=82.91 E-value=0.86 Score=39.95 Aligned_cols=38 Identities=24% Similarity=0.475 Sum_probs=30.0
Q ss_pred CCcEeEEEEeCCC----------hh---HHHHHHHHHhccCCCCcEEEEEE
Q 021911 211 VGMVDVIFSDVAQ----------PD---QARILALNASYFLKAGGHFVISI 248 (305)
Q Consensus 211 ~~~fD~V~~d~~~----------~~---~~~~l~~~a~~~LkpGG~lv~s~ 248 (305)
...||+||+|+.. .| ...+|...+.++|||||.+++..
T Consensus 209 ~grYDlVfvNv~TpyR~HHYQQCeDHA~~l~mL~~~al~~L~pGGtlv~~a 259 (324)
T 3trk_A 209 LGRYDLVVINIHTPFRIHHYQQCVDHAMKLQMLGGDSLRLLKPGGSLLIRA 259 (324)
T ss_dssp GCCEEEEEEECCCCCCSSHHHHHHHHHHHHHHHHHHGGGGEEEEEEEEEEE
T ss_pred CCceeEEEEecCCccccchHHHHHHHHHHHHHHHHHHHhhcCCCceEEEEe
Confidence 3799999999982 23 34455557889999999999986
|
| >2ae2_A Protein (tropinone reductase-II); oxidoreductase, tropane alkaloid biosynthesis, reduction of tropinone to pseudotropine; HET: NAP PTO; 1.90A {Datura stramonium} SCOP: c.2.1.2 PDB: 2ae1_A* 1ipe_A* 1ipf_A* | Back alignment and structure |
|---|
Probab=82.83 E-value=2.1 Score=36.62 Aligned_cols=79 Identities=14% Similarity=0.210 Sum_probs=52.3
Q ss_pred CCCEEEEEecCCCccHHHHHhhhC-CCcEEEEEeCChHHHHHHHHHHHcC-CCeEEEEccCCCCcccccC-------C-C
Q 021911 143 PGARVLYLGAASGTTVSHVSDIVG-PNGVVYAVEFSHRSGRDLVNMAKKR-TNVIPIIEDARHPAKYRML-------V-G 212 (305)
Q Consensus 143 ~g~~VLDlG~G~G~~t~~la~~~~-~~~~V~avD~s~~~~~~l~~~a~~~-~nI~~~~~D~~~~~~~~~~-------~-~ 212 (305)
.+++||-.|+ +|....++++.+- ...+|+.++.++....++.+..... .++.++.+|+++....... . .
T Consensus 8 ~~k~vlVTGa-s~giG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~g 86 (260)
T 2ae2_A 8 EGCTALVTGG-SRGIGYGIVEELASLGASVYTCSRNQKELNDCLTQWRSKGFKVEASVCDLSSRSERQELMNTVANHFHG 86 (260)
T ss_dssp TTCEEEEESC-SSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCEEEEEECCTTCHHHHHHHHHHHHHHTTT
T ss_pred CCCEEEEECC-CcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCcEEEEEcCCCCHHHHHHHHHHHHHHcCC
Confidence 3578888886 4566666665542 3458999999986665555444332 4688899999886432111 1 5
Q ss_pred cEeEEEEeCC
Q 021911 213 MVDVIFSDVA 222 (305)
Q Consensus 213 ~fD~V~~d~~ 222 (305)
.+|+|+.++.
T Consensus 87 ~id~lv~~Ag 96 (260)
T 2ae2_A 87 KLNILVNNAG 96 (260)
T ss_dssp CCCEEEECCC
T ss_pred CCCEEEECCC
Confidence 7899998765
|
| >3l77_A Short-chain alcohol dehydrogenase; oxidoreductase; HET: NJP PG4; 1.60A {Thermococcus sibiricus} SCOP: c.2.1.0 PDB: 3tn7_A* | Back alignment and structure |
|---|
Probab=82.70 E-value=2.5 Score=35.36 Aligned_cols=78 Identities=12% Similarity=0.036 Sum_probs=51.7
Q ss_pred CCEEEEEecCCCccHHHHHhhhC-CCcEEEEEeCChHHHHHHHHHHH--cCCCeEEEEccCCCCcccccCC-------Cc
Q 021911 144 GARVLYLGAASGTTVSHVSDIVG-PNGVVYAVEFSHRSGRDLVNMAK--KRTNVIPIIEDARHPAKYRMLV-------GM 213 (305)
Q Consensus 144 g~~VLDlG~G~G~~t~~la~~~~-~~~~V~avD~s~~~~~~l~~~a~--~~~nI~~~~~D~~~~~~~~~~~-------~~ 213 (305)
+.+||-.|+. +....++++.+- ...+|+.++.++...+++.+... ...++.++.+|+++........ +.
T Consensus 2 ~k~vlITGas-~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~g~ 80 (235)
T 3l77_A 2 MKVAVITGAS-RGIGEAIARALARDGYALALGARSVDRLEKIAHELMQEQGVEVFYHHLDVSKAESVEEFSKKVLERFGD 80 (235)
T ss_dssp CCEEEEESCS-SHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHHHCCCEEEEECCTTCHHHHHHHCC-HHHHHSS
T ss_pred CCEEEEECCC-cHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhhcCCeEEEEEeccCCHHHHHHHHHHHHHhcCC
Confidence 3567777754 556667666542 23579999999866666555443 2367899999998875432111 37
Q ss_pred EeEEEEeCC
Q 021911 214 VDVIFSDVA 222 (305)
Q Consensus 214 fD~V~~d~~ 222 (305)
+|+++.++.
T Consensus 81 id~li~~Ag 89 (235)
T 3l77_A 81 VDVVVANAG 89 (235)
T ss_dssp CSEEEECCC
T ss_pred CCEEEECCc
Confidence 899998765
|
| >2wyu_A Enoyl-[acyl carrier protein] reductase; oxidoreductase, fatty acid biosynthesis, oxidation reduction; 1.50A {Thermus thermophilus} PDB: 1ulu_A 2wyv_A* 2wyw_A* 2yw9_A* | Back alignment and structure |
|---|
Probab=82.69 E-value=4.3 Score=34.64 Aligned_cols=79 Identities=14% Similarity=0.148 Sum_probs=49.4
Q ss_pred CCCEEEEEecC-CCccHHHHHhhhC-CCcEEEEEeCChHHHHHHHHHH-HcCCCeEEEEccCCCCcccccC-------CC
Q 021911 143 PGARVLYLGAA-SGTTVSHVSDIVG-PNGVVYAVEFSHRSGRDLVNMA-KKRTNVIPIIEDARHPAKYRML-------VG 212 (305)
Q Consensus 143 ~g~~VLDlG~G-~G~~t~~la~~~~-~~~~V~avD~s~~~~~~l~~~a-~~~~nI~~~~~D~~~~~~~~~~-------~~ 212 (305)
.+++||-.|++ +|....++++.+- ...+|+.++.++. ..+.++.. .....+.++.+|+++....... ..
T Consensus 7 ~~k~vlVTGas~~~gIG~~ia~~l~~~G~~V~~~~r~~~-~~~~~~~l~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~g 85 (261)
T 2wyu_A 7 SGKKALVMGVTNQRSLGFAIAAKLKEAGAEVALSYQAER-LRPEAEKLAEALGGALLFRADVTQDEELDALFAGVKEAFG 85 (261)
T ss_dssp TTCEEEEESCCSSSSHHHHHHHHHHHHTCEEEEEESCGG-GHHHHHHHHHHTTCCEEEECCTTCHHHHHHHHHHHHHHHS
T ss_pred CCCEEEEECCCCCCcHHHHHHHHHHHCCCEEEEEcCCHH-HHHHHHHHHHhcCCcEEEECCCCCHHHHHHHHHHHHHHcC
Confidence 35789999986 3667777776542 2358999998874 12222222 2223578899999886532211 13
Q ss_pred cEeEEEEeCC
Q 021911 213 MVDVIFSDVA 222 (305)
Q Consensus 213 ~fD~V~~d~~ 222 (305)
.+|+|+.++.
T Consensus 86 ~iD~lv~~Ag 95 (261)
T 2wyu_A 86 GLDYLVHAIA 95 (261)
T ss_dssp SEEEEEECCC
T ss_pred CCCEEEECCC
Confidence 7899998764
|
| >3gqv_A Enoyl reductase; medium-chain reductase (MDR superfamily), rossmann fold, NAD binding, oxidoreductase; HET: NAP; 1.74A {Aspergillus terreus} PDB: 3b6z_A* 3b70_A* | Back alignment and structure |
|---|
Probab=82.65 E-value=3.5 Score=37.47 Aligned_cols=95 Identities=18% Similarity=0.174 Sum_probs=56.1
Q ss_pred CCCCEEEEEecC--CCccHHHHHhhhCCCcEEEEEeCChHHHHHHHHHHHcCCCeEEEEccCCCCcc-c-ccCCCcEeEE
Q 021911 142 KPGARVLYLGAA--SGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKRTNVIPIIEDARHPAK-Y-RMLVGMVDVI 217 (305)
Q Consensus 142 ~~g~~VLDlG~G--~G~~t~~la~~~~~~~~V~avD~s~~~~~~l~~~a~~~~nI~~~~~D~~~~~~-~-~~~~~~fD~V 217 (305)
+++++||-+|++ .|..+..+|+..+ .+|+++. ++.. ++.+++..--..+..+-.+... . ....+.+|+|
T Consensus 163 ~~g~~VlV~Ga~G~vG~~a~qla~~~G--a~Vi~~~-~~~~----~~~~~~lGa~~vi~~~~~~~~~~v~~~t~g~~d~v 235 (371)
T 3gqv_A 163 SKPVYVLVYGGSTATATVTMQMLRLSG--YIPIATC-SPHN----FDLAKSRGAEEVFDYRAPNLAQTIRTYTKNNLRYA 235 (371)
T ss_dssp SSCCEEEEESTTSHHHHHHHHHHHHTT--CEEEEEE-CGGG----HHHHHHTTCSEEEETTSTTHHHHHHHHTTTCCCEE
T ss_pred CCCcEEEEECCCcHHHHHHHHHHHHCC--CEEEEEe-CHHH----HHHHHHcCCcEEEECCCchHHHHHHHHccCCccEE
Confidence 789999999983 6778888888865 4788885 7643 2334433211222221111111 0 0112459999
Q ss_pred EEeCCChhHHHHHHHHHhccC-CCCcEEEEE
Q 021911 218 FSDVAQPDQARILALNASYFL-KAGGHFVIS 247 (305)
Q Consensus 218 ~~d~~~~~~~~~l~~~a~~~L-kpGG~lv~s 247 (305)
|-....+... . .+.+.| +++|+++..
T Consensus 236 ~d~~g~~~~~---~-~~~~~l~~~~G~iv~~ 262 (371)
T 3gqv_A 236 LDCITNVEST---T-FCFAAIGRAGGHYVSL 262 (371)
T ss_dssp EESSCSHHHH---H-HHHHHSCTTCEEEEES
T ss_pred EECCCchHHH---H-HHHHHhhcCCCEEEEE
Confidence 9776654332 2 455677 699998874
|
| >4imr_A 3-oxoacyl-(acyl-carrier-protein) reductase; oxidoreductase, nicotinamide adenine dinucleotide phosphate, structural genomics; HET: NAP; 1.96A {Agrobacterium fabrum} | Back alignment and structure |
|---|
Probab=82.64 E-value=2.1 Score=37.22 Aligned_cols=79 Identities=13% Similarity=0.123 Sum_probs=52.0
Q ss_pred CCCEEEEEecCCCccHHHHHhhh-CCCcEEEEEeCChHHHHHHHHHHHcC-CCeEEEEccCCCCcccccC------CCcE
Q 021911 143 PGARVLYLGAASGTTVSHVSDIV-GPNGVVYAVEFSHRSGRDLVNMAKKR-TNVIPIIEDARHPAKYRML------VGMV 214 (305)
Q Consensus 143 ~g~~VLDlG~G~G~~t~~la~~~-~~~~~V~avD~s~~~~~~l~~~a~~~-~nI~~~~~D~~~~~~~~~~------~~~f 214 (305)
.+.+||-.|++ +....+++..+ ....+|+.++.++....++.+..... .++.++.+|+.+....... ...+
T Consensus 32 ~gk~~lVTGas-~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~~~~~~~~~~~~g~i 110 (275)
T 4imr_A 32 RGRTALVTGSS-RGIGAAIAEGLAGAGAHVILHGVKPGSTAAVQQRIIASGGTAQELAGDLSEAGAGTDLIERAEAIAPV 110 (275)
T ss_dssp TTCEEEETTCS-SHHHHHHHHHHHHTTCEEEEEESSTTTTHHHHHHHHHTTCCEEEEECCTTSTTHHHHHHHHHHHHSCC
T ss_pred CCCEEEEECCC-CHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHHHhcCCeEEEEEecCCCHHHHHHHHHHHHHhCCC
Confidence 35788877765 45666666544 23458999999876555555554433 6789999999886532111 1478
Q ss_pred eEEEEeCC
Q 021911 215 DVIFSDVA 222 (305)
Q Consensus 215 D~V~~d~~ 222 (305)
|+++.++.
T Consensus 111 D~lvnnAg 118 (275)
T 4imr_A 111 DILVINAS 118 (275)
T ss_dssp CEEEECCC
T ss_pred CEEEECCC
Confidence 99998765
|
| >4dqx_A Probable oxidoreductase protein; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.00A {Rhizobium etli} | Back alignment and structure |
|---|
Probab=82.35 E-value=4.5 Score=35.09 Aligned_cols=77 Identities=10% Similarity=0.155 Sum_probs=50.6
Q ss_pred CCCEEEEEecCCCccHHHHHhhh-CCCcEEEEEeCChHHHHHHHHHHHcCCCeEEEEccCCCCcccccC-------CCcE
Q 021911 143 PGARVLYLGAASGTTVSHVSDIV-GPNGVVYAVEFSHRSGRDLVNMAKKRTNVIPIIEDARHPAKYRML-------VGMV 214 (305)
Q Consensus 143 ~g~~VLDlG~G~G~~t~~la~~~-~~~~~V~avD~s~~~~~~l~~~a~~~~nI~~~~~D~~~~~~~~~~-------~~~f 214 (305)
.+.+||-.|++ +....++++.+ ....+|+.+|.++....++.+.. ..++.++.+|+++....... ...+
T Consensus 26 ~~k~vlVTGas-~GIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~--~~~~~~~~~Dv~d~~~v~~~~~~~~~~~g~i 102 (277)
T 4dqx_A 26 NQRVCIVTGGG-SGIGRATAELFAKNGAYVVVADVNEDAAVRVANEI--GSKAFGVRVDVSSAKDAESMVEKTTAKWGRV 102 (277)
T ss_dssp TTCEEEEETTT-SHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHH--CTTEEEEECCTTCHHHHHHHHHHHHHHHSCC
T ss_pred CCCEEEEECCC-cHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHh--CCceEEEEecCCCHHHHHHHHHHHHHHcCCC
Confidence 35788888865 45666666554 23458999999986555544432 35788999999886532211 1478
Q ss_pred eEEEEeCC
Q 021911 215 DVIFSDVA 222 (305)
Q Consensus 215 D~V~~d~~ 222 (305)
|+|+.++.
T Consensus 103 D~lv~nAg 110 (277)
T 4dqx_A 103 DVLVNNAG 110 (277)
T ss_dssp CEEEECCC
T ss_pred CEEEECCC
Confidence 99998765
|
| >3f9i_A 3-oxoacyl-[acyl-carrier-protein] reductase; 3-ketoacyl-(acyl-carrier-protein) reductase, FAT biosynthesis, lipid synthesis, NADP; 2.25A {Rickettsia prowazekii} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=82.18 E-value=2.6 Score=35.64 Aligned_cols=79 Identities=14% Similarity=0.101 Sum_probs=52.3
Q ss_pred CCCCCEEEEEecCCCccHHHHHhhhC-CCcEEEEEeCChHHHHHHHHHHHcCCCeEEEEccCCCCccccc---CCCcEeE
Q 021911 141 IKPGARVLYLGAASGTTVSHVSDIVG-PNGVVYAVEFSHRSGRDLVNMAKKRTNVIPIIEDARHPAKYRM---LVGMVDV 216 (305)
Q Consensus 141 ~~~g~~VLDlG~G~G~~t~~la~~~~-~~~~V~avD~s~~~~~~l~~~a~~~~nI~~~~~D~~~~~~~~~---~~~~fD~ 216 (305)
..++.+||-.|+. +....++++.+- ...+|+.++.++..++++.+... .++.++.+|+.+...... ....+|+
T Consensus 11 ~~~~k~vlVTGas-~gIG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~~~--~~~~~~~~D~~~~~~~~~~~~~~~~id~ 87 (249)
T 3f9i_A 11 DLTGKTSLITGAS-SGIGSAIARLLHKLGSKVIISGSNEEKLKSLGNALK--DNYTIEVCNLANKEECSNLISKTSNLDI 87 (249)
T ss_dssp CCTTCEEEETTTT-SHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHC--SSEEEEECCTTSHHHHHHHHHTCSCCSE
T ss_pred cCCCCEEEEECCC-ChHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHhc--cCccEEEcCCCCHHHHHHHHHhcCCCCE
Confidence 3457888888865 556666666542 34589999999865555544432 478899999987643211 1247899
Q ss_pred EEEeCC
Q 021911 217 IFSDVA 222 (305)
Q Consensus 217 V~~d~~ 222 (305)
|+.++.
T Consensus 88 li~~Ag 93 (249)
T 3f9i_A 88 LVCNAG 93 (249)
T ss_dssp EEECCC
T ss_pred EEECCC
Confidence 998765
|
| >4fn4_A Short chain dehydrogenase; NADH-binding, rossmann fold, oxidoreductase; HET: NAD; 1.75A {Sulfolobus acidocaldarius} | Back alignment and structure |
|---|
Probab=82.09 E-value=2.6 Score=36.58 Aligned_cols=79 Identities=18% Similarity=0.219 Sum_probs=55.5
Q ss_pred CCCEEEEEecCCCccHHHHHhhh-CCCcEEEEEeCChHHHHHHHHHHHcC-CCeEEEEccCCCCccccc-------CCCc
Q 021911 143 PGARVLYLGAASGTTVSHVSDIV-GPNGVVYAVEFSHRSGRDLVNMAKKR-TNVIPIIEDARHPAKYRM-------LVGM 213 (305)
Q Consensus 143 ~g~~VLDlG~G~G~~t~~la~~~-~~~~~V~avD~s~~~~~~l~~~a~~~-~nI~~~~~D~~~~~~~~~-------~~~~ 213 (305)
.++.+|--|++.| ....+|..+ ....+|+.+|.++..++++.+..+.. .++.++++|+++...... ..+.
T Consensus 6 ~gKvalVTGas~G-IG~aiA~~la~~Ga~Vv~~~~~~~~~~~~~~~i~~~g~~~~~~~~Dvt~~~~v~~~~~~~~~~~G~ 84 (254)
T 4fn4_A 6 KNKVVIVTGAGSG-IGRAIAKKFALNDSIVVAVELLEDRLNQIVQELRGMGKEVLGVKADVSKKKDVEEFVRRTFETYSR 84 (254)
T ss_dssp TTCEEEEETTTSH-HHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTSHHHHHHHHHHHHHHHSC
T ss_pred CCCEEEEeCCCCH-HHHHHHHHHHHcCCEEEEEECCHHHHHHHHHHHHhcCCcEEEEEccCCCHHHHHHHHHHHHHHcCC
Confidence 4678888887765 455555443 23468999999998777777666554 678999999988754221 1258
Q ss_pred EeEEEEeCC
Q 021911 214 VDVIFSDVA 222 (305)
Q Consensus 214 fD~V~~d~~ 222 (305)
.|+++.|+.
T Consensus 85 iDiLVNNAG 93 (254)
T 4fn4_A 85 IDVLCNNAG 93 (254)
T ss_dssp CCEEEECCC
T ss_pred CCEEEECCc
Confidence 899998764
|
| >1yb1_A 17-beta-hydroxysteroid dehydrogenase type XI; short chain dehydrogenase, HUM structural genomics, structural genomics consortium, SGC; HET: AE2; 1.95A {Homo sapiens} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=82.06 E-value=1.9 Score=37.15 Aligned_cols=79 Identities=13% Similarity=0.119 Sum_probs=53.2
Q ss_pred CCCEEEEEecCCCccHHHHHhhhC-CCcEEEEEeCChHHHHHHHHHHHcC-CCeEEEEccCCCCccccc-------CCCc
Q 021911 143 PGARVLYLGAASGTTVSHVSDIVG-PNGVVYAVEFSHRSGRDLVNMAKKR-TNVIPIIEDARHPAKYRM-------LVGM 213 (305)
Q Consensus 143 ~g~~VLDlG~G~G~~t~~la~~~~-~~~~V~avD~s~~~~~~l~~~a~~~-~nI~~~~~D~~~~~~~~~-------~~~~ 213 (305)
.+.+||-.|+ +|....++++.+- ...+|+.++.++....++.+..+.. .++.++.+|+.+...... ....
T Consensus 30 ~~k~vlITGa-sggIG~~la~~L~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dl~~~~~v~~~~~~~~~~~g~ 108 (272)
T 1yb1_A 30 TGEIVLITGA-GHGIGRLTAYEFAKLKSKLVLWDINKHGLEETAAKCKGLGAKVHTFVVDCSNREDIYSSAKKVKAEIGD 108 (272)
T ss_dssp TTCEEEEETT-TSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHHHTCC
T ss_pred CCCEEEEECC-CchHHHHHHHHHHHCCCEEEEEEcCHHHHHHHHHHHHhcCCeEEEEEeeCCCHHHHHHHHHHHHHHCCC
Confidence 3578887775 4667777776542 3458999999986666655554443 578999999987653211 1247
Q ss_pred EeEEEEeCC
Q 021911 214 VDVIFSDVA 222 (305)
Q Consensus 214 fD~V~~d~~ 222 (305)
+|+||.++.
T Consensus 109 iD~li~~Ag 117 (272)
T 1yb1_A 109 VSILVNNAG 117 (272)
T ss_dssp CSEEEECCC
T ss_pred CcEEEECCC
Confidence 899998764
|
| >2pd4_A Enoyl-[acyl-carrier-protein] reductase [NADH]; antibacterial target, type II fatty acid biosynthesis, enoyl-ACP-reductase, FABI; HET: NAD DCN; 2.30A {Helicobacter pylori} SCOP: c.2.1.2 PDB: 2pd3_A* | Back alignment and structure |
|---|
Probab=82.04 E-value=5.3 Score=34.35 Aligned_cols=79 Identities=14% Similarity=0.132 Sum_probs=50.3
Q ss_pred CCCEEEEEecC-CCccHHHHHhhhC-CCcEEEEEeCChHHHHHHHHHH-HcCCCeEEEEccCCCCccccc-------CCC
Q 021911 143 PGARVLYLGAA-SGTTVSHVSDIVG-PNGVVYAVEFSHRSGRDLVNMA-KKRTNVIPIIEDARHPAKYRM-------LVG 212 (305)
Q Consensus 143 ~g~~VLDlG~G-~G~~t~~la~~~~-~~~~V~avD~s~~~~~~l~~~a-~~~~nI~~~~~D~~~~~~~~~-------~~~ 212 (305)
.+.+||-.|++ ++....++++.+- ...+|+.++.++. ..+.++.. ....++.++.+|+.+...... ...
T Consensus 5 ~~k~vlVTGas~~~gIG~~~a~~l~~~G~~V~~~~r~~~-~~~~~~~l~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~g 83 (275)
T 2pd4_A 5 KGKKGLIVGVANNKSIAYGIAQSCFNQGATLAFTYLNES-LEKRVRPIAQELNSPYVYELDVSKEEHFKSLYNSVKKDLG 83 (275)
T ss_dssp TTCEEEEECCCSTTSHHHHHHHHHHTTTCEEEEEESSTT-THHHHHHHHHHTTCCCEEECCTTCHHHHHHHHHHHHHHTS
T ss_pred CCCEEEEECCCCCCcHHHHHHHHHHHCCCEEEEEeCCHH-HHHHHHHHHHhcCCcEEEEcCCCCHHHHHHHHHHHHHHcC
Confidence 35789999986 3677888877653 3458999988764 22222222 222357889999988653211 124
Q ss_pred cEeEEEEeCC
Q 021911 213 MVDVIFSDVA 222 (305)
Q Consensus 213 ~fD~V~~d~~ 222 (305)
.+|+|+.++.
T Consensus 84 ~id~lv~nAg 93 (275)
T 2pd4_A 84 SLDFIVHSVA 93 (275)
T ss_dssp CEEEEEECCC
T ss_pred CCCEEEECCc
Confidence 7899998664
|
| >2bgk_A Rhizome secoisolariciresinol dehydrogenase; oxidoreductase; 1.6A {Podophyllum peltatum} SCOP: c.2.1.2 PDB: 2bgl_A* 2bgm_A* | Back alignment and structure |
|---|
Probab=81.76 E-value=1.9 Score=36.94 Aligned_cols=79 Identities=15% Similarity=0.227 Sum_probs=51.3
Q ss_pred CCCEEEEEecCCCccHHHHHhhhC-CCcEEEEEeCChHHHHHHHHHHHcCCCeEEEEccCCCCcccccC-------CCcE
Q 021911 143 PGARVLYLGAASGTTVSHVSDIVG-PNGVVYAVEFSHRSGRDLVNMAKKRTNVIPIIEDARHPAKYRML-------VGMV 214 (305)
Q Consensus 143 ~g~~VLDlG~G~G~~t~~la~~~~-~~~~V~avD~s~~~~~~l~~~a~~~~nI~~~~~D~~~~~~~~~~-------~~~f 214 (305)
.+.+||-.|+ +|....++++.+- ...+|+.++.++.....+.+......++.++.+|+++....... ...+
T Consensus 15 ~~k~vlITGa-sggiG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~i 93 (278)
T 2bgk_A 15 QDKVAIITGG-AGGIGETTAKLFVRYGAKVVIADIADDHGQKVCNNIGSPDVISFVHCDVTKDEDVRNLVDTTIAKHGKL 93 (278)
T ss_dssp TTCEEEEEST-TSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHCCTTTEEEEECCTTCHHHHHHHHHHHHHHHSCC
T ss_pred cCCEEEEECC-CCHHHHHHHHHHHHCCCEEEEEcCChhHHHHHHHHhCCCCceEEEECCCCCHHHHHHHHHHHHHHcCCC
Confidence 3578888885 5667777776542 24589999998755444444332223799999999886533211 1378
Q ss_pred eEEEEeCC
Q 021911 215 DVIFSDVA 222 (305)
Q Consensus 215 D~V~~d~~ 222 (305)
|+||.++.
T Consensus 94 d~li~~Ag 101 (278)
T 2bgk_A 94 DIMFGNVG 101 (278)
T ss_dssp CEEEECCC
T ss_pred CEEEECCc
Confidence 99997654
|
| >3o26_A Salutaridine reductase; short chain dehydrogenase/reductases, oxidoreductase; HET: NDP; 1.91A {Papaver somniferum} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=81.61 E-value=1.9 Score=37.51 Aligned_cols=79 Identities=15% Similarity=0.145 Sum_probs=53.7
Q ss_pred CCCEEEEEecCCCccHHHHHhhh-CCCcEEEEEeCChHHHHHHHHHHHcC--CCeEEEEccCCCC-ccccc-------CC
Q 021911 143 PGARVLYLGAASGTTVSHVSDIV-GPNGVVYAVEFSHRSGRDLVNMAKKR--TNVIPIIEDARHP-AKYRM-------LV 211 (305)
Q Consensus 143 ~g~~VLDlG~G~G~~t~~la~~~-~~~~~V~avD~s~~~~~~l~~~a~~~--~nI~~~~~D~~~~-~~~~~-------~~ 211 (305)
.+.+||-.|+. +....++++.+ ....+|+.++.++....++++..... .++.++.+|+.+. ..... ..
T Consensus 11 ~~k~vlITGas-~GIG~~~a~~L~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~Dl~~~~~~v~~~~~~~~~~~ 89 (311)
T 3o26_A 11 KRRCAVVTGGN-KGIGFEICKQLSSNGIMVVLTCRDVTKGHEAVEKLKNSNHENVVFHQLDVTDPIATMSSLADFIKTHF 89 (311)
T ss_dssp -CCEEEESSCS-SHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHTTTCCSEEEEECCTTSCHHHHHHHHHHHHHHH
T ss_pred CCcEEEEecCC-chHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCCceEEEEccCCCcHHHHHHHHHHHHHhC
Confidence 35678877765 55666666554 23458999999987766666665544 4799999999887 32111 12
Q ss_pred CcEeEEEEeCC
Q 021911 212 GMVDVIFSDVA 222 (305)
Q Consensus 212 ~~fD~V~~d~~ 222 (305)
..+|+||.++.
T Consensus 90 g~iD~lv~nAg 100 (311)
T 3o26_A 90 GKLDILVNNAG 100 (311)
T ss_dssp SSCCEEEECCC
T ss_pred CCCCEEEECCc
Confidence 47999998876
|
| >3h2s_A Putative NADH-flavin reductase; Q03B84, NESG, LCR19, structural genomics, PSI-2, protein structure initiative; HET: NDP; 1.78A {Lactobacillus casei atcc 334} | Back alignment and structure |
|---|
Probab=81.59 E-value=7.5 Score=31.80 Aligned_cols=71 Identities=17% Similarity=0.193 Sum_probs=48.7
Q ss_pred CEEEEEecCCCccHHHHHhhh-CCCcEEEEEeCChHHHHHHHHHHHcCCCeEEEEccCCCCcccccCCCcEeEEEEeCCC
Q 021911 145 ARVLYLGAASGTTVSHVSDIV-GPNGVVYAVEFSHRSGRDLVNMAKKRTNVIPIIEDARHPAKYRMLVGMVDVIFSDVAQ 223 (305)
Q Consensus 145 ~~VLDlG~G~G~~t~~la~~~-~~~~~V~avD~s~~~~~~l~~~a~~~~nI~~~~~D~~~~~~~~~~~~~fD~V~~d~~~ 223 (305)
++||-.| ++|....++++.+ ....+|++++-++..... . ...+++++.+|+.+... .....+|+||..+..
T Consensus 1 MkilVtG-atG~iG~~l~~~L~~~g~~V~~~~R~~~~~~~----~-~~~~~~~~~~D~~d~~~--~~~~~~d~vi~~ag~ 72 (224)
T 3h2s_A 1 MKIAVLG-ATGRAGSAIVAEARRRGHEVLAVVRDPQKAAD----R-LGATVATLVKEPLVLTE--ADLDSVDAVVDALSV 72 (224)
T ss_dssp CEEEEET-TTSHHHHHHHHHHHHTTCEEEEEESCHHHHHH----H-TCTTSEEEECCGGGCCH--HHHTTCSEEEECCCC
T ss_pred CEEEEEc-CCCHHHHHHHHHHHHCCCEEEEEEeccccccc----c-cCCCceEEecccccccH--hhcccCCEEEECCcc
Confidence 3677777 5678888888765 233589999998743222 2 12589999999987754 223578999987753
|
| >4a0s_A Octenoyl-COA reductase/carboxylase; oxidoreductase, transferase, cinnabaramide PKS biosynthesis; HET: CO8 NAP; 1.90A {Streptomyces SP} PDB: 4a10_A | Back alignment and structure |
|---|
Probab=81.56 E-value=1.8 Score=40.45 Aligned_cols=98 Identities=17% Similarity=0.166 Sum_probs=58.0
Q ss_pred cCCCCCCEEEEEec--CCCccHHHHHhhhCCCcEEEEEeCChHHHHHHHHHHHcCC-CeEEE--EccCCCC---------
Q 021911 139 IWIKPGARVLYLGA--ASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKRT-NVIPI--IEDARHP--------- 204 (305)
Q Consensus 139 ~~~~~g~~VLDlG~--G~G~~t~~la~~~~~~~~V~avD~s~~~~~~l~~~a~~~~-nI~~~--~~D~~~~--------- 204 (305)
..++++++||-.|+ +.|..+..+|...+ .+|++++.++... +.+++.. ...+. ..|+...
T Consensus 216 ~~~~~g~~VlV~GasG~iG~~a~qla~~~G--a~vi~~~~~~~~~----~~~~~lGa~~~i~~~~~~~~~~~~~~~~~~~ 289 (447)
T 4a0s_A 216 AQMKQGDIVLIWGASGGLGSYAIQFVKNGG--GIPVAVVSSAQKE----AAVRALGCDLVINRAELGITDDIADDPRRVV 289 (447)
T ss_dssp TCCCTTCEEEETTTTSHHHHHHHHHHHHTT--CEEEEEESSHHHH----HHHHHTTCCCEEEHHHHTCCTTGGGCHHHHH
T ss_pred cCCCCCCEEEEECCCCHHHHHHHHHHHHcC--CEEEEEeCCHHHH----HHHHhcCCCEEEecccccccccccccccccc
Confidence 46789999999987 34556777777754 5899999888443 3333321 11111 1121110
Q ss_pred -------ccc-ccCCCcEeEEEEeCCChhHHHHHHHHHhccCCCCcEEEEE
Q 021911 205 -------AKY-RMLVGMVDVIFSDVAQPDQARILALNASYFLKAGGHFVIS 247 (305)
Q Consensus 205 -------~~~-~~~~~~fD~V~~d~~~~~~~~~l~~~a~~~LkpGG~lv~s 247 (305)
... ......+|+||-....+ .+. .+..+|+++|++++.
T Consensus 290 ~~~~~~~~~v~~~~g~g~Dvvid~~G~~----~~~-~~~~~l~~~G~iv~~ 335 (447)
T 4a0s_A 290 ETGRKLAKLVVEKAGREPDIVFEHTGRV----TFG-LSVIVARRGGTVVTC 335 (447)
T ss_dssp HHHHHHHHHHHHHHSSCCSEEEECSCHH----HHH-HHHHHSCTTCEEEES
T ss_pred hhhhHHHHHHHHHhCCCceEEEECCCch----HHH-HHHHHHhcCCEEEEE
Confidence 000 00124699998766542 344 677899999999875
|
| >3ew7_A LMO0794 protein; Q8Y8U8_lismo, putative NAD-dependent epimerase/dehydratase, LMR162, NESG, structural genomics, PSI-2; 2.73A {Listeria monocytogenes} | Back alignment and structure |
|---|
Probab=81.55 E-value=4.5 Score=33.00 Aligned_cols=70 Identities=11% Similarity=0.059 Sum_probs=47.9
Q ss_pred CEEEEEecCCCccHHHHHhhhC-CCcEEEEEeCChHHHHHHHHHHHcCCCeEEEEccCCCCcccccCCCcEeEEEEeCCC
Q 021911 145 ARVLYLGAASGTTVSHVSDIVG-PNGVVYAVEFSHRSGRDLVNMAKKRTNVIPIIEDARHPAKYRMLVGMVDVIFSDVAQ 223 (305)
Q Consensus 145 ~~VLDlG~G~G~~t~~la~~~~-~~~~V~avD~s~~~~~~l~~~a~~~~nI~~~~~D~~~~~~~~~~~~~fD~V~~d~~~ 223 (305)
++||-+| ++|....++++.+- ...+|++++-++.... ... +++.++..|+++... . ....+|+||..+..
T Consensus 1 MkvlVtG-atG~iG~~l~~~L~~~g~~V~~~~R~~~~~~----~~~--~~~~~~~~D~~d~~~-~-~~~~~d~vi~~ag~ 71 (221)
T 3ew7_A 1 MKIGIIG-ATGRAGSRILEEAKNRGHEVTAIVRNAGKIT----QTH--KDINILQKDIFDLTL-S-DLSDQNVVVDAYGI 71 (221)
T ss_dssp CEEEEET-TTSHHHHHHHHHHHHTTCEEEEEESCSHHHH----HHC--SSSEEEECCGGGCCH-H-HHTTCSEEEECCCS
T ss_pred CeEEEEc-CCchhHHHHHHHHHhCCCEEEEEEcCchhhh----hcc--CCCeEEeccccChhh-h-hhcCCCEEEECCcC
Confidence 3677666 46778888877652 2358999999874322 222 689999999987754 1 23578999987763
|
| >3e9n_A Putative short-chain dehydrogenase/reductase; structural genomics, unknown function, oxidoreductase, PSI- 2; 2.40A {Corynebacterium glutamicum} | Back alignment and structure |
|---|
Probab=81.49 E-value=5.2 Score=33.65 Aligned_cols=74 Identities=18% Similarity=0.140 Sum_probs=47.8
Q ss_pred CCEEEEEecCCCccHHHHHhhhCCCcEEEEEeCChHHHHHHHHHHHcCCCeEEEEccCCCCcccc------cCCCcEeEE
Q 021911 144 GARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKRTNVIPIIEDARHPAKYR------MLVGMVDVI 217 (305)
Q Consensus 144 g~~VLDlG~G~G~~t~~la~~~~~~~~V~avD~s~~~~~~l~~~a~~~~nI~~~~~D~~~~~~~~------~~~~~fD~V 217 (305)
+.+||-.|+ ++....++++.+.....|+.++.++..... ..+..++.++.+|+.+..... .....+|+|
T Consensus 5 ~k~vlITGa-s~gIG~~~a~~l~~g~~v~~~~r~~~~~~~----~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~id~l 79 (245)
T 3e9n_A 5 KKIAVVTGA-TGGMGIEIVKDLSRDHIVYALGRNPEHLAA----LAEIEGVEPIESDIVKEVLEEGGVDKLKNLDHVDTL 79 (245)
T ss_dssp -CEEEEEST-TSHHHHHHHHHHTTTSEEEEEESCHHHHHH----HHTSTTEEEEECCHHHHHHTSSSCGGGTTCSCCSEE
T ss_pred CCEEEEEcC-CCHHHHHHHHHHhCCCeEEEEeCCHHHHHH----HHhhcCCcceecccchHHHHHHHHHHHHhcCCCCEE
Confidence 467887775 456788888776556789999998844333 233457888988875542111 112478999
Q ss_pred EEeCC
Q 021911 218 FSDVA 222 (305)
Q Consensus 218 ~~d~~ 222 (305)
+.++.
T Consensus 80 v~~Ag 84 (245)
T 3e9n_A 80 VHAAA 84 (245)
T ss_dssp EECC-
T ss_pred EECCC
Confidence 98765
|
| >3r1i_A Short-chain type dehydrogenase/reductase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 1.95A {Mycobacterium marinum} | Back alignment and structure |
|---|
Probab=81.20 E-value=1.6 Score=38.06 Aligned_cols=79 Identities=18% Similarity=0.226 Sum_probs=53.2
Q ss_pred CCCEEEEEecCCCccHHHHHhhh-CCCcEEEEEeCChHHHHHHHHHHHcC-CCeEEEEccCCCCcccccC-------CCc
Q 021911 143 PGARVLYLGAASGTTVSHVSDIV-GPNGVVYAVEFSHRSGRDLVNMAKKR-TNVIPIIEDARHPAKYRML-------VGM 213 (305)
Q Consensus 143 ~g~~VLDlG~G~G~~t~~la~~~-~~~~~V~avD~s~~~~~~l~~~a~~~-~nI~~~~~D~~~~~~~~~~-------~~~ 213 (305)
.+.+||-.|++. ....++++.+ ....+|+.++.++...+++.+..... .++.++.+|+++....... ...
T Consensus 31 ~gk~~lVTGas~-GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~v~~~~~~~~~~~g~ 109 (276)
T 3r1i_A 31 SGKRALITGAST-GIGKKVALAYAEAGAQVAVAARHSDALQVVADEIAGVGGKALPIRCDVTQPDQVRGMLDQMTGELGG 109 (276)
T ss_dssp TTCEEEEESTTS-HHHHHHHHHHHHTTCEEEEEESSGGGGHHHHHHHHHTTCCCEEEECCTTCHHHHHHHHHHHHHHHSC
T ss_pred CCCEEEEeCCCC-HHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCeEEEEEcCCCCHHHHHHHHHHHHHHcCC
Confidence 467888888664 5666666544 23458999999876666665555443 5789999999887542211 137
Q ss_pred EeEEEEeCC
Q 021911 214 VDVIFSDVA 222 (305)
Q Consensus 214 fD~V~~d~~ 222 (305)
+|+|+.++.
T Consensus 110 iD~lvnnAg 118 (276)
T 3r1i_A 110 IDIAVCNAG 118 (276)
T ss_dssp CSEEEECCC
T ss_pred CCEEEECCC
Confidence 899998765
|
| >3l6e_A Oxidoreductase, short-chain dehydrogenase/reducta; structural genomics, PSI-2, protein structure initiative; 2.30A {Aeromonas hydrophila subsp} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=81.13 E-value=4.8 Score=33.86 Aligned_cols=76 Identities=12% Similarity=0.079 Sum_probs=50.1
Q ss_pred CCEEEEEecCCCccHHHHHhhh-CCCcEEEEEeCChHHHHHHHHHHHcCCCeEEEEccCCCCccccc-------CCCcEe
Q 021911 144 GARVLYLGAASGTTVSHVSDIV-GPNGVVYAVEFSHRSGRDLVNMAKKRTNVIPIIEDARHPAKYRM-------LVGMVD 215 (305)
Q Consensus 144 g~~VLDlG~G~G~~t~~la~~~-~~~~~V~avD~s~~~~~~l~~~a~~~~nI~~~~~D~~~~~~~~~-------~~~~fD 215 (305)
+.+||-.|++ +....+++..+ ....+|+.++.++..++++.+.... ++.++.+|+++...... ..+.+|
T Consensus 3 ~k~vlVTGas-~GIG~a~a~~l~~~G~~V~~~~r~~~~~~~~~~~~~~--~~~~~~~D~~~~~~v~~~~~~~~~~~g~id 79 (235)
T 3l6e_A 3 LGHIIVTGAG-SGLGRALTIGLVERGHQVSMMGRRYQRLQQQELLLGN--AVIGIVADLAHHEDVDVAFAAAVEWGGLPE 79 (235)
T ss_dssp CCEEEEESTT-SHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHGG--GEEEEECCTTSHHHHHHHHHHHHHHHCSCS
T ss_pred CCEEEEECCC-CHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHhcC--CceEEECCCCCHHHHHHHHHHHHHhcCCCc
Confidence 3577877765 45666666544 2345899999998666665554432 58999999988653211 124789
Q ss_pred EEEEeCC
Q 021911 216 VIFSDVA 222 (305)
Q Consensus 216 ~V~~d~~ 222 (305)
+++.++.
T Consensus 80 ~lvnnAg 86 (235)
T 3l6e_A 80 LVLHCAG 86 (235)
T ss_dssp EEEEECC
T ss_pred EEEECCC
Confidence 9998765
|
| >4ezb_A Uncharacterized conserved protein; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium; 2.10A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=80.75 E-value=9.9 Score=33.74 Aligned_cols=89 Identities=18% Similarity=0.223 Sum_probs=54.7
Q ss_pred CEEEEEecCCCccHHHHHhhhCCC--cEEEEEeCChH---HHHHHHHHHHcCCCeEEEEc-cCCCCcccccCCCcEeEEE
Q 021911 145 ARVLYLGAASGTTVSHVSDIVGPN--GVVYAVEFSHR---SGRDLVNMAKKRTNVIPIIE-DARHPAKYRMLVGMVDVIF 218 (305)
Q Consensus 145 ~~VLDlG~G~G~~t~~la~~~~~~--~~V~avD~s~~---~~~~l~~~a~~~~nI~~~~~-D~~~~~~~~~~~~~fD~V~ 218 (305)
++|.-||+ |.....+|..+-.. ..|+++|.++. ...+..+.+.+. .+ .. |..+ .....|+||
T Consensus 25 m~IgvIG~--G~mG~~lA~~L~~~G~~~V~~~dr~~~~~~~~~~~~~~~~~~-g~---~~~s~~e------~~~~aDvVi 92 (317)
T 4ezb_A 25 TTIAFIGF--GEAAQSIAGGLGGRNAARLAAYDLRFNDPAASGALRARAAEL-GV---EPLDDVA------GIACADVVL 92 (317)
T ss_dssp CEEEEECC--SHHHHHHHHHHHTTTCSEEEEECGGGGCTTTHHHHHHHHHHT-TC---EEESSGG------GGGGCSEEE
T ss_pred CeEEEECc--cHHHHHHHHHHHHcCCCeEEEEeCCCccccchHHHHHHHHHC-CC---CCCCHHH------HHhcCCEEE
Confidence 57877775 66777777655333 48999999862 122233333322 33 11 2211 134679999
Q ss_pred EeCCChhHHHHHHHHHhccCCCCcEEEEE
Q 021911 219 SDVAQPDQARILALNASYFLKAGGHFVIS 247 (305)
Q Consensus 219 ~d~~~~~~~~~l~~~a~~~LkpGG~lv~s 247 (305)
+.+|.+...+.+. .+...|+++-. ++.
T Consensus 93 ~avp~~~~~~~~~-~i~~~l~~~~i-vv~ 119 (317)
T 4ezb_A 93 SLVVGAATKAVAA-SAAPHLSDEAV-FID 119 (317)
T ss_dssp ECCCGGGHHHHHH-HHGGGCCTTCE-EEE
T ss_pred EecCCHHHHHHHH-HHHhhcCCCCE-EEE
Confidence 9999887777775 78888988754 444
|
| >3f1l_A Uncharacterized oxidoreductase YCIK; E. coli, NADP+,; 0.95A {Escherichia coli K12} SCOP: c.2.1.0 PDB: 3f1k_A 3e9q_A* 3f5q_A 3gz4_A* 3f5s_A 3gy0_A* 3iah_A* 3g1t_A | Back alignment and structure |
|---|
Probab=80.70 E-value=4.5 Score=34.34 Aligned_cols=79 Identities=10% Similarity=0.022 Sum_probs=50.7
Q ss_pred CCCEEEEEecCCCccHHHHHhhh-CCCcEEEEEeCChHHHHHHHHHHHcC--CCeEEEEccC--CCCccccc-------C
Q 021911 143 PGARVLYLGAASGTTVSHVSDIV-GPNGVVYAVEFSHRSGRDLVNMAKKR--TNVIPIIEDA--RHPAKYRM-------L 210 (305)
Q Consensus 143 ~g~~VLDlG~G~G~~t~~la~~~-~~~~~V~avD~s~~~~~~l~~~a~~~--~nI~~~~~D~--~~~~~~~~-------~ 210 (305)
.+.+||-.|++ +....++++.+ ....+|+.++.++...+++.+..... .++.++..|+ .+...... .
T Consensus 11 ~~k~vlVTGas-~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~ 89 (252)
T 3f1l_A 11 NDRIILVTGAS-DGIGREAAMTYARYGATVILLGRNEEKLRQVASHINEETGRQPQWFILDLLTCTSENCQQLAQRIAVN 89 (252)
T ss_dssp TTCEEEEESTT-SHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHHHSCCCEEEECCTTTCCHHHHHHHHHHHHHH
T ss_pred CCCEEEEeCCC-ChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhhcCCCceEEEEecccCCHHHHHHHHHHHHHh
Confidence 46788888865 45666666544 23458999999986666655544332 4788999998 55432110 1
Q ss_pred CCcEeEEEEeCC
Q 021911 211 VGMVDVIFSDVA 222 (305)
Q Consensus 211 ~~~fD~V~~d~~ 222 (305)
...+|+++.++.
T Consensus 90 ~g~id~lv~nAg 101 (252)
T 3f1l_A 90 YPRLDGVLHNAG 101 (252)
T ss_dssp CSCCSEEEECCC
T ss_pred CCCCCEEEECCc
Confidence 247899998664
|
| >1zsy_A Mitochondrial 2-enoyl thioester reductase; medium-chain dehydrogenase/reductase, oxidoreductase, 2-ENOY thioester reductase; 1.75A {Homo sapiens} PDB: 2vcy_A | Back alignment and structure |
|---|
Probab=80.67 E-value=3.2 Score=37.39 Aligned_cols=100 Identities=16% Similarity=0.134 Sum_probs=54.3
Q ss_pred CCCCCCEEEEEec--CCCccHHHHHhhhCCCcEEEE-EeCChHHHHHHHHHHHcCCCeEEEEcc---CCCCcccccCCCc
Q 021911 140 WIKPGARVLYLGA--ASGTTVSHVSDIVGPNGVVYA-VEFSHRSGRDLVNMAKKRTNVIPIIED---ARHPAKYRMLVGM 213 (305)
Q Consensus 140 ~~~~g~~VLDlG~--G~G~~t~~la~~~~~~~~V~a-vD~s~~~~~~l~~~a~~~~nI~~~~~D---~~~~~~~~~~~~~ 213 (305)
.++++++||-+|+ +.|..+..+|+..+ .+|++ ++.++.. .+.++.+++..--..+..+ .............
T Consensus 164 ~~~~g~~VlV~Ga~G~vG~~aiqlak~~G--a~vi~~~~~~~~~-~~~~~~~~~lGa~~vi~~~~~~~~~~~~~~~~~~~ 240 (357)
T 1zsy_A 164 QLQPGDSVIQNASNSGVGQAVIQIAAALG--LRTINVVRDRPDI-QKLSDRLKSLGAEHVITEEELRRPEMKNFFKDMPQ 240 (357)
T ss_dssp CCCTTCEEEESSTTSHHHHHHHHHHHHHT--CEEEEEECCCSCH-HHHHHHHHHTTCSEEEEHHHHHSGGGGGTTSSSCC
T ss_pred ccCCCCEEEEeCCcCHHHHHHHHHHHHcC--CEEEEEecCccch-HHHHHHHHhcCCcEEEecCcchHHHHHHHHhCCCC
Confidence 6788999999997 45667888888765 34554 4554321 1223334333111222211 1111111000114
Q ss_pred EeEEEEeCCChhHHHHHHHHHhccCCCCcEEEEE
Q 021911 214 VDVIFSDVAQPDQARILALNASYFLKAGGHFVIS 247 (305)
Q Consensus 214 fD~V~~d~~~~~~~~~l~~~a~~~LkpGG~lv~s 247 (305)
+|+||-....+. +. .+.++|+++|++++.
T Consensus 241 ~Dvvid~~g~~~----~~-~~~~~l~~~G~iv~~ 269 (357)
T 1zsy_A 241 PRLALNCVGGKS----ST-ELLRQLARGGTMVTY 269 (357)
T ss_dssp CSEEEESSCHHH----HH-HHHTTSCTTCEEEEC
T ss_pred ceEEEECCCcHH----HH-HHHHhhCCCCEEEEE
Confidence 899986555332 23 466899999999875
|
| >4g81_D Putative hexonate dehydrogenase; enzyme function initiative, EFI, structural genomics, dehydr oxidoreductase; 1.90A {Salmonella enterica subsp} | Back alignment and structure |
|---|
Probab=80.50 E-value=4.6 Score=34.97 Aligned_cols=79 Identities=13% Similarity=0.104 Sum_probs=54.9
Q ss_pred CCCEEEEEecCCCccHHHHHhhh-CCCcEEEEEeCChHHHHHHHHHHHcC-CCeEEEEccCCCCcccc-------cCCCc
Q 021911 143 PGARVLYLGAASGTTVSHVSDIV-GPNGVVYAVEFSHRSGRDLVNMAKKR-TNVIPIIEDARHPAKYR-------MLVGM 213 (305)
Q Consensus 143 ~g~~VLDlG~G~G~~t~~la~~~-~~~~~V~avD~s~~~~~~l~~~a~~~-~nI~~~~~D~~~~~~~~-------~~~~~ 213 (305)
.++.+|--|++.| ....+|..+ ....+|+.+|.++..+++..+...+. .++.++++|+++..... .....
T Consensus 8 ~gKvalVTGas~G-IG~aia~~la~~Ga~Vvi~~~~~~~~~~~~~~l~~~g~~~~~~~~Dv~~~~~v~~~~~~~~~~~G~ 86 (255)
T 4g81_D 8 TGKTALVTGSARG-LGFAYAEGLAAAGARVILNDIRATLLAESVDTLTRKGYDAHGVAFDVTDELAIEAAFSKLDAEGIH 86 (255)
T ss_dssp TTCEEEETTCSSH-HHHHHHHHHHHTTCEEEECCSCHHHHHHHHHHHHHTTCCEEECCCCTTCHHHHHHHHHHHHHTTCC
T ss_pred CCCEEEEeCCCcH-HHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCcEEEEEeeCCCHHHHHHHHHHHHHHCCC
Confidence 4678888786665 555555544 23468999999987777766666554 67899999998875321 12368
Q ss_pred EeEEEEeCC
Q 021911 214 VDVIFSDVA 222 (305)
Q Consensus 214 fD~V~~d~~ 222 (305)
.|+++.|+.
T Consensus 87 iDiLVNNAG 95 (255)
T 4g81_D 87 VDILINNAG 95 (255)
T ss_dssp CCEEEECCC
T ss_pred CcEEEECCC
Confidence 999998775
|
| >1g0o_A Trihydroxynaphthalene reductase; protein-NADPH-active site inhibitor complex, dinucleotide binding fold, oxidoreductase; HET: NDP PYQ; 1.70A {Magnaporthe grisea} SCOP: c.2.1.2 PDB: 1doh_A* 1g0n_A* 1ybv_A* | Back alignment and structure |
|---|
Probab=80.39 E-value=4.8 Score=34.78 Aligned_cols=79 Identities=15% Similarity=0.165 Sum_probs=48.7
Q ss_pred CCCEEEEEecCCCccHHHHHhhhC-CCcEEEEEeCChHH-HHHHHHHHHcC-CCeEEEEccCCCCcccccC-------CC
Q 021911 143 PGARVLYLGAASGTTVSHVSDIVG-PNGVVYAVEFSHRS-GRDLVNMAKKR-TNVIPIIEDARHPAKYRML-------VG 212 (305)
Q Consensus 143 ~g~~VLDlG~G~G~~t~~la~~~~-~~~~V~avD~s~~~-~~~l~~~a~~~-~nI~~~~~D~~~~~~~~~~-------~~ 212 (305)
.+.+||-.|+ ++....++++.+- ...+|+.++.++.. .+.+.+..... .++.++.+|+.+....... ..
T Consensus 28 ~~k~vlVTGa-s~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~g 106 (283)
T 1g0o_A 28 EGKVALVTGA-GRGIGREMAMELGRRGCKVIVNYANSTESAEEVVAAIKKNGSDAACVKANVGVVEDIVRMFEEAVKIFG 106 (283)
T ss_dssp TTCEEEETTT-TSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHHHHS
T ss_pred CCCEEEEeCC-CcHHHHHHHHHHHHCCCEEEEEeCCchHHHHHHHHHHHHhCCCeEEEEcCCCCHHHHHHHHHHHHHHcC
Confidence 3567877776 4567777776542 23589998887532 23333333332 5788999999876432111 14
Q ss_pred cEeEEEEeCC
Q 021911 213 MVDVIFSDVA 222 (305)
Q Consensus 213 ~fD~V~~d~~ 222 (305)
.+|+|+.++.
T Consensus 107 ~iD~lv~~Ag 116 (283)
T 1g0o_A 107 KLDIVCSNSG 116 (283)
T ss_dssp CCCEEEECCC
T ss_pred CCCEEEECCC
Confidence 6899998765
|
| >3ai3_A NADPH-sorbose reductase; rossmann-fold, NADPH-dependent reductase, short chain dehydrogenase/reductase, oxidoreductase; HET: NAP SOL SOE; 1.80A {Gluconobacter frateurii} PDB: 3ai2_A* 3ai1_A* | Back alignment and structure |
|---|
Probab=80.37 E-value=2.6 Score=36.06 Aligned_cols=78 Identities=12% Similarity=0.167 Sum_probs=51.1
Q ss_pred CCEEEEEecCCCccHHHHHhhhC-CCcEEEEEeCChHHHHHHHHHHHc--CCCeEEEEccCCCCcccccC-------CCc
Q 021911 144 GARVLYLGAASGTTVSHVSDIVG-PNGVVYAVEFSHRSGRDLVNMAKK--RTNVIPIIEDARHPAKYRML-------VGM 213 (305)
Q Consensus 144 g~~VLDlG~G~G~~t~~la~~~~-~~~~V~avD~s~~~~~~l~~~a~~--~~nI~~~~~D~~~~~~~~~~-------~~~ 213 (305)
+.+||-.|+. |....++++.+- ...+|+.++.++....++.+.... ..++.++.+|+++....... .+.
T Consensus 7 ~k~vlVTGas-~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~g~ 85 (263)
T 3ai3_A 7 GKVAVITGSS-SGIGLAIAEGFAKEGAHIVLVARQVDRLHEAARSLKEKFGVRVLEVAVDVATPEGVDAVVESVRSSFGG 85 (263)
T ss_dssp TCEEEEESCS-SHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHHHCCCEEEEECCTTSHHHHHHHHHHHHHHHSS
T ss_pred CCEEEEECCC-chHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHHHHhcCCceEEEEcCCCCHHHHHHHHHHHHHHcCC
Confidence 5778887765 556677666542 235899999988655555444332 35788999999886532211 137
Q ss_pred EeEEEEeCC
Q 021911 214 VDVIFSDVA 222 (305)
Q Consensus 214 fD~V~~d~~ 222 (305)
+|+|+.++.
T Consensus 86 id~lv~~Ag 94 (263)
T 3ai3_A 86 ADILVNNAG 94 (263)
T ss_dssp CSEEEECCC
T ss_pred CCEEEECCC
Confidence 899998764
|
| >2uyo_A Hypothetical protein ML2640; putative methyltransferase, transferas; 1.7A {Mycobacterium leprae} SCOP: c.66.1.57 PDB: 2ckd_A 2uyq_A* | Back alignment and structure |
|---|
Probab=80.37 E-value=7.4 Score=34.68 Aligned_cols=100 Identities=8% Similarity=0.008 Sum_probs=58.6
Q ss_pred CEEEEEecCCCccHHHHHhhhCCCcEEEEEeCChHHHHHHHHHHH-----cCCCeEEEEccCCCCcccccC------CCc
Q 021911 145 ARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAK-----KRTNVIPIIEDARHPAKYRML------VGM 213 (305)
Q Consensus 145 ~~VLDlG~G~G~~t~~la~~~~~~~~V~avD~s~~~~~~l~~~a~-----~~~nI~~~~~D~~~~~~~~~~------~~~ 213 (305)
..||+||||-=+....+.. .....|+=||. |..+..-.+... ...+..++.+|+++ .....+ ...
T Consensus 104 ~QvV~LGaGlDTra~Rl~~--~~~~~v~evD~-P~vi~~k~~lL~~~~~~~~~~~~~v~~Dl~d-~~~~~l~~~g~d~~~ 179 (310)
T 2uyo_A 104 RQFVILASGLDSRAYRLDW--PTGTTVYEIDQ-PKVLAYKSTTLAEHGVTPTADRREVPIDLRQ-DWPPALRSAGFDPSA 179 (310)
T ss_dssp CEEEEETCTTCCHHHHSCC--CTTCEEEEEEC-HHHHHHHHHHHHHTTCCCSSEEEEEECCTTS-CHHHHHHHTTCCTTS
T ss_pred CeEEEeCCCCCchhhhccC--CCCcEEEEcCC-HHHHHHHHHHHHhcCCCCCCCeEEEecchHh-hHHHHHHhccCCCCC
Confidence 5799999998776444431 12357888884 544443333333 23578899999987 211111 122
Q ss_pred EeEEEEeCC----ChhHHHHHHHHHhccCCCCcEEEEEE
Q 021911 214 VDVIFSDVA----QPDQARILALNASYFLKAGGHFVISI 248 (305)
Q Consensus 214 fD~V~~d~~----~~~~~~~l~~~a~~~LkpGG~lv~s~ 248 (305)
--++++... .+++...+...+...+.||.+|++..
T Consensus 180 Pt~~i~Egvl~Yl~~~~~~~ll~~l~~~~~~gs~l~~d~ 218 (310)
T 2uyo_A 180 RTAWLAEGLLMYLPATAQDGLFTEIGGLSAVGSRIAVET 218 (310)
T ss_dssp CEEEEECSCGGGSCHHHHHHHHHHHHHTCCTTCEEEEEC
T ss_pred CEEEEEechHhhCCHHHHHHHHHHHHHhCCCCeEEEEEe
Confidence 234444332 33344334437888889999999986
|
| >2ew2_A 2-dehydropantoate 2-reductase, putative; alpha-structure, alpha-beta structure, structural genomics, protein structure initiative; HET: MSE; 2.00A {Enterococcus faecalis} | Back alignment and structure |
|---|
Probab=80.35 E-value=7.3 Score=33.85 Aligned_cols=94 Identities=12% Similarity=0.082 Sum_probs=53.0
Q ss_pred CEEEEEecCCCccHHHHHhhhCC-CcEEEEEeCChHHHHHHHHHHHcCCCeEEEE--------ccCCCCcccccCCCcEe
Q 021911 145 ARVLYLGAASGTTVSHVSDIVGP-NGVVYAVEFSHRSGRDLVNMAKKRTNVIPII--------EDARHPAKYRMLVGMVD 215 (305)
Q Consensus 145 ~~VLDlG~G~G~~t~~la~~~~~-~~~V~avD~s~~~~~~l~~~a~~~~nI~~~~--------~D~~~~~~~~~~~~~fD 215 (305)
++|+-+|+ |.....+|..+.. ...|+.+|.++...+.+.+. .+.... .++............+|
T Consensus 4 m~i~iiG~--G~~G~~~a~~l~~~g~~V~~~~r~~~~~~~~~~~-----g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d 76 (316)
T 2ew2_A 4 MKIAIAGA--GAMGSRLGIMLHQGGNDVTLIDQWPAHIEAIRKN-----GLIADFNGEEVVANLPIFSPEEIDHQNEQVD 76 (316)
T ss_dssp CEEEEECC--SHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHH-----CEEEEETTEEEEECCCEECGGGCCTTSCCCS
T ss_pred CeEEEECc--CHHHHHHHHHHHhCCCcEEEEECCHHHHHHHHhC-----CEEEEeCCCeeEecceeecchhhcccCCCCC
Confidence 47888877 5666666654421 24799999998554443322 122211 11111111100112789
Q ss_pred EEEEeCCChhHHHHHHHHHhccCCCCcEEEEE
Q 021911 216 VIFSDVAQPDQARILALNASYFLKAGGHFVIS 247 (305)
Q Consensus 216 ~V~~d~~~~~~~~~l~~~a~~~LkpGG~lv~s 247 (305)
+||+.++......++. .+...|+++-. +++
T Consensus 77 ~vi~~v~~~~~~~v~~-~l~~~l~~~~~-iv~ 106 (316)
T 2ew2_A 77 LIIALTKAQQLDAMFK-AIQPMITEKTY-VLC 106 (316)
T ss_dssp EEEECSCHHHHHHHHH-HHGGGCCTTCE-EEE
T ss_pred EEEEEeccccHHHHHH-HHHHhcCCCCE-EEE
Confidence 9999888665556665 77888888754 444
|
| >4da9_A Short-chain dehydrogenase/reductase; structural genomics, protein structure initiative, PSI-biology; 2.50A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=80.27 E-value=3.4 Score=35.86 Aligned_cols=79 Identities=8% Similarity=0.054 Sum_probs=51.0
Q ss_pred CCCEEEEEecCCCccHHHHHhhhC-CCcEEEEEeC-ChHHHHHHHHHHHcC-CCeEEEEccCCCCcccccC-------CC
Q 021911 143 PGARVLYLGAASGTTVSHVSDIVG-PNGVVYAVEF-SHRSGRDLVNMAKKR-TNVIPIIEDARHPAKYRML-------VG 212 (305)
Q Consensus 143 ~g~~VLDlG~G~G~~t~~la~~~~-~~~~V~avD~-s~~~~~~l~~~a~~~-~nI~~~~~D~~~~~~~~~~-------~~ 212 (305)
.+.+||-.|++. ....++++.+- ...+|+.++. ++.....+.+..... .++.++.+|+++....... .+
T Consensus 28 ~~k~~lVTGas~-GIG~aia~~la~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~g 106 (280)
T 4da9_A 28 ARPVAIVTGGRR-GIGLGIARALAASGFDIAITGIGDAEGVAPVIAELSGLGARVIFLRADLADLSSHQATVDAVVAEFG 106 (280)
T ss_dssp CCCEEEEETTTS-HHHHHHHHHHHHTTCEEEEEESCCHHHHHHHHHHHHHTTCCEEEEECCTTSGGGHHHHHHHHHHHHS
T ss_pred CCCEEEEecCCC-HHHHHHHHHHHHCCCeEEEEeCCCHHHHHHHHHHHHhcCCcEEEEEecCCCHHHHHHHHHHHHHHcC
Confidence 457788888654 56666665542 3458999986 555555554444433 5799999999887542211 13
Q ss_pred cEeEEEEeCC
Q 021911 213 MVDVIFSDVA 222 (305)
Q Consensus 213 ~fD~V~~d~~ 222 (305)
.+|+|+.++.
T Consensus 107 ~iD~lvnnAg 116 (280)
T 4da9_A 107 RIDCLVNNAG 116 (280)
T ss_dssp CCCEEEEECC
T ss_pred CCCEEEECCC
Confidence 7899998764
|
| >3gaf_A 7-alpha-hydroxysteroid dehydrogenase; seattle structural genomics center for infectious disease, ssgcid, oxidoreductase, structural genomics; 2.20A {Brucella melitensis} | Back alignment and structure |
|---|
Probab=80.25 E-value=1.7 Score=37.22 Aligned_cols=79 Identities=10% Similarity=0.183 Sum_probs=52.6
Q ss_pred CCCEEEEEecCCCccHHHHHhhhC-CCcEEEEEeCChHHHHHHHHHHHcC-CCeEEEEccCCCCcccccC-------CCc
Q 021911 143 PGARVLYLGAASGTTVSHVSDIVG-PNGVVYAVEFSHRSGRDLVNMAKKR-TNVIPIIEDARHPAKYRML-------VGM 213 (305)
Q Consensus 143 ~g~~VLDlG~G~G~~t~~la~~~~-~~~~V~avD~s~~~~~~l~~~a~~~-~nI~~~~~D~~~~~~~~~~-------~~~ 213 (305)
.+.+||-.|++. ....++++.+- ...+|+.+|.++...+++.+..... .++.++.+|+++....... .+.
T Consensus 11 ~~k~vlVTGas~-gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~g~ 89 (256)
T 3gaf_A 11 NDAVAIVTGAAA-GIGRAIAGTFAKAGASVVVTDLKSEGAEAVAAAIRQAGGKAIGLECNVTDEQHREAVIKAALDQFGK 89 (256)
T ss_dssp TTCEEEECSCSS-HHHHHHHHHHHHHTCEEEEEESSHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHHHHSC
T ss_pred CCCEEEEECCCC-HHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCcEEEEECCCCCHHHHHHHHHHHHHHcCC
Confidence 357888888655 45555555431 2358999999987666666555443 6799999999886532211 147
Q ss_pred EeEEEEeCC
Q 021911 214 VDVIFSDVA 222 (305)
Q Consensus 214 fD~V~~d~~ 222 (305)
+|+++.++.
T Consensus 90 id~lv~nAg 98 (256)
T 3gaf_A 90 ITVLVNNAG 98 (256)
T ss_dssp CCEEEECCC
T ss_pred CCEEEECCC
Confidence 899998764
|
| >3v8b_A Putative dehydrogenase, possibly 3-oxoacyl-[acyl- protein] reductase; PSI-biology, structural genomics, protein structure initiati nysgrc; 2.70A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=80.07 E-value=2.6 Score=36.73 Aligned_cols=79 Identities=15% Similarity=0.173 Sum_probs=52.8
Q ss_pred CCCEEEEEecCCCccHHHHHhhh-CCCcEEEEEeCChHHHHHHHHHHHcC-CCeEEEEccCCCCcccccC-------CCc
Q 021911 143 PGARVLYLGAASGTTVSHVSDIV-GPNGVVYAVEFSHRSGRDLVNMAKKR-TNVIPIIEDARHPAKYRML-------VGM 213 (305)
Q Consensus 143 ~g~~VLDlG~G~G~~t~~la~~~-~~~~~V~avD~s~~~~~~l~~~a~~~-~nI~~~~~D~~~~~~~~~~-------~~~ 213 (305)
.+..||-.|++. ....+++..+ ....+|+.++.++..+.++.+..... .++.++.+|+++....... .+.
T Consensus 27 ~~k~~lVTGas~-GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~g~ 105 (283)
T 3v8b_A 27 PSPVALITGAGS-GIGRATALALAADGVTVGALGRTRTEVEEVADEIVGAGGQAIALEADVSDELQMRNAVRDLVLKFGH 105 (283)
T ss_dssp CCCEEEEESCSS-HHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHTTTTCCEEEEECCTTCHHHHHHHHHHHHHHHSC
T ss_pred CCCEEEEECCCC-HHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCcEEEEEccCCCHHHHHHHHHHHHHHhCC
Confidence 457888888655 4666666544 23458999999986666665555433 5789999999886532111 247
Q ss_pred EeEEEEeCC
Q 021911 214 VDVIFSDVA 222 (305)
Q Consensus 214 fD~V~~d~~ 222 (305)
+|+++.++.
T Consensus 106 iD~lVnnAg 114 (283)
T 3v8b_A 106 LDIVVANAG 114 (283)
T ss_dssp CCEEEECCC
T ss_pred CCEEEECCC
Confidence 899998664
|
| >3uve_A Carveol dehydrogenase ((+)-trans-carveol dehydrog; ssgcid, structural genomics, seattle structural genomics CEN infectious disease; HET: NAD PG4; 1.55A {Mycobacterium avium} SCOP: c.2.1.0 PDB: 3uwr_A* | Back alignment and structure |
|---|
Probab=80.03 E-value=2.8 Score=36.37 Aligned_cols=79 Identities=16% Similarity=0.246 Sum_probs=51.2
Q ss_pred CCCEEEEEecCCCccHHHHHhhh-CCCcEEEEEeCC----------------hHHHHHHHHHHHcC-CCeEEEEccCCCC
Q 021911 143 PGARVLYLGAASGTTVSHVSDIV-GPNGVVYAVEFS----------------HRSGRDLVNMAKKR-TNVIPIIEDARHP 204 (305)
Q Consensus 143 ~g~~VLDlG~G~G~~t~~la~~~-~~~~~V~avD~s----------------~~~~~~l~~~a~~~-~nI~~~~~D~~~~ 204 (305)
.+.+||-.|++.| ...+++..+ ....+|+.+|.+ +..+.++.+..... .++.++.+|+++.
T Consensus 10 ~~k~~lVTGas~g-IG~aia~~la~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~ 88 (286)
T 3uve_A 10 EGKVAFVTGAARG-QGRSHAVRLAQEGADIIAVDICKPIRAGVVDTAIPASTPEDLAETADLVKGHNRRIVTAEVDVRDY 88 (286)
T ss_dssp TTCEEEEESTTSH-HHHHHHHHHHHTTCEEEEEECCSCSBTTBCCCSSCCCCHHHHHHHHHHHHTTTCCEEEEECCTTCH
T ss_pred CCCEEEEeCCCch-HHHHHHHHHHHCCCeEEEEeccccccccccccccccCCHHHHHHHHHHHhhcCCceEEEEcCCCCH
Confidence 4678888887654 566666544 234589999886 44444554444433 5799999999886
Q ss_pred cccccC-------CCcEeEEEEeCC
Q 021911 205 AKYRML-------VGMVDVIFSDVA 222 (305)
Q Consensus 205 ~~~~~~-------~~~fD~V~~d~~ 222 (305)
...... ...+|+++.++.
T Consensus 89 ~~v~~~~~~~~~~~g~id~lv~nAg 113 (286)
T 3uve_A 89 DALKAAVDSGVEQLGRLDIIVANAG 113 (286)
T ss_dssp HHHHHHHHHHHHHHSCCCEEEECCC
T ss_pred HHHHHHHHHHHHHhCCCCEEEECCc
Confidence 532211 147899998765
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST 
Original result of RPS-BLAST against SCOP70(version1.75) database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() |
| 305 | ||||
| d1g8aa_ | 227 | c.66.1.3 (A:) Fibrillarin homologue {Archaeon Pyro | 3e-81 | |
| d1g8sa_ | 230 | c.66.1.3 (A:) Fibrillarin homologue {Archaeon Meth | 4e-76 | |
| d1nt2a_ | 209 | c.66.1.3 (A:) Fibrillarin homologue {Archaeon Arch | 7e-71 | |
| d2b25a1 | 324 | c.66.1.13 (A:6-329) Hypothetical protein FLJ20628 | 6e-08 | |
| d1nkva_ | 245 | c.66.1.21 (A:) Hypothetical Protein YjhP {Escheric | 1e-06 | |
| d1i9ga_ | 264 | c.66.1.13 (A:) Probable methyltransferase Rv2118c | 5e-05 | |
| d1yb2a1 | 250 | c.66.1.13 (A:6-255) Hypothetical protein Ta0852 {T | 9e-05 | |
| d2p41a1 | 257 | c.66.1.25 (A:8-264) An RNA cap (nucleoside-2'-O-)- | 0.001 | |
| d1vqol1 | 150 | c.12.1.1 (L:1-150) Ribosomal protein L15 (L15p) {A | 0.003 | |
| d2j01p1 | 146 | c.12.1.1 (P:5-150) Ribosomal protein L15 (L15p) {T | 0.004 |
| >d1g8aa_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Pyrococcus horikoshii [TaxId: 53953]} Length = 227 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Fibrillarin homologue domain: Fibrillarin homologue species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Score = 243 bits (621), Expect = 3e-81
Identities = 113/229 (49%), Positives = 151/229 (65%), Gaps = 8/229 (3%)
Query: 69 VVVEPHRHEGVF--IAKGKEDALVTKNLVAGEAVYNEKRISVQNEDGTKVEYRIWNPFRS 126
V V+ H+ GV+ I + + TKNLV G+ VY E+ I + E EYRIWNP RS
Sbjct: 2 VEVKKHKFPGVYTVIDDDGSERIATKNLVPGQRVYGERVIKWEGE-----EYRIWNPNRS 56
Query: 127 KLAAAVLGGVDNIWIKPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVN 186
KL AA++ G+ N IKPG VLYLG ASGTT SHVSDIVG G ++ +EFS R R+LV
Sbjct: 57 KLGAAIMNGLKNFPIKPGKSVLYLGIASGTTASHVSDIVGWEGKIFGIEFSPRVLRELVP 116
Query: 187 MAKKRTNVIPIIEDARHPAKYRMLVGMVDVIFSDVAQPDQARILALNASYFLKAGGHFVI 246
+ ++R N++PI+ DA P +YR LV VDVIF DVAQP QA+IL NA +LK GG+ +I
Sbjct: 117 IVEERRNIVPILGDATKPEEYRALVPKVDVIFEDVAQPTQAKILIDNAEVYLKRGGYGMI 176
Query: 247 SIKANCIDSTVPAEAVFQSEVKKLQQDQFKPFEQVTLEPFERDHACVVG 295
++K+ ID T E VF+ EV++ + F+ E++ LEP+E+DHA V
Sbjct: 177 AVKSRSIDVTKEPEQVFR-EVERELSEYFEVIERLNLEPYEKDHALFVV 224
|
| >d1g8sa_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Methanococcus jannaschii [TaxId: 2190]} Length = 230 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Fibrillarin homologue domain: Fibrillarin homologue species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Score = 230 bits (587), Expect = 4e-76
Identities = 98/233 (42%), Positives = 150/233 (64%), Gaps = 8/233 (3%)
Query: 68 KVVVEPHRHEGVFIAKGKEDA--LVTKNLVAGEAVYNEKRISVQNEDGTKVEYRIWNPFR 125
+ + E ++ + + TK++V G+ VY+EK I + +E EYRIWNP +
Sbjct: 2 EDIKIKEIFENIYEVDLGDGLKRIATKSIVKGKKVYDEKIIKIGDE-----EYRIWNPNK 56
Query: 126 SKLAAAVLGGVDNIWIKPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLV 185
SKLAAA++ G+ + IK +++LYLGA++GTT SHV+DI G+VYA+E++ R R+L+
Sbjct: 57 SKLAAAIIKGLKVMPIKRDSKILYLGASAGTTPSHVADIA-DKGIVYAIEYAPRIMRELL 115
Query: 186 NMAKKRTNVIPIIEDARHPAKYRMLVGMVDVIFSDVAQPDQARILALNASYFLKAGGHFV 245
+ +R N+IPI+ DA P +Y +V VDVI+ DVAQP+QA IL NA +FLK GG+ +
Sbjct: 116 DACAERENIIPILGDANKPQEYANIVEKVDVIYEDVAQPNQAEILIKNAKWFLKKGGYGM 175
Query: 246 ISIKANCIDSTVPAEAVFQSEVKKLQQDQFKPFEQVTLEPFERDHACVVGGYR 298
I+IKA ID T + +F+ + + L+ FK ++V +EPFE+DH VG +
Sbjct: 176 IAIKARSIDVTKDPKEIFKEQKEILEAGGFKIVDEVDIEPFEKDHVMFVGIWE 228
|
| >d1nt2a_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} Length = 209 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Fibrillarin homologue domain: Fibrillarin homologue species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]
Score = 216 bits (550), Expect = 7e-71
Identities = 94/223 (42%), Positives = 132/223 (59%), Gaps = 18/223 (8%)
Query: 77 EGVFIAKGKEDALVTKNLVAGEAVYNEKRISVQNEDGTKVEYRIWNPFRSKLAAAVLGGV 136
V++ +D LVTK+ Y EK YR W P+RSKLAA +L G
Sbjct: 5 RNVYLL---DDTLVTKSKYGS--HYGEKVFD---------GYREWVPWRSKLAAMILKG- 49
Query: 137 DNIWIKPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKRTNVIP 196
+ ++ RVLYLGAASGTTVSH++DIV G++YAVE+S + L+ + ++R N+IP
Sbjct: 50 HRLKLRGDERVLYLGAASGTTVSHLADIV-DEGIIYAVEYSAKPFEKLLELVRERNNIIP 108
Query: 197 IIEDARHPAKYRMLVGMVDVIFSDVAQPDQARILALNASYFLKAGGHFVISIKANCIDST 256
++ DA P KY +V VD+I+ D+AQ +Q IL NA +FLK G VI +KA IDST
Sbjct: 109 LLFDASKPWKYSGIVEKVDLIYQDIAQKNQIEILKANAEFFLKEKGEVVIMVKARSIDST 168
Query: 257 VPAEAVFQSEVKKLQQDQFKPFEQVTLEPFERDHACVVGGYRM 299
E VF+S +K+++ D FK + +L P+ RDH + YR
Sbjct: 169 AEPEEVFKSVLKEMEGD-FKIVKHGSLMPYHRDH-IFIHAYRF 209
|
| >d2b25a1 c.66.1.13 (A:6-329) Hypothetical protein FLJ20628 {Human (Homo sapiens) [TaxId: 9606]} Length = 324 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: tRNA(1-methyladenosine) methyltransferase-like domain: Hypothetical protein FLJ20628 species: Human (Homo sapiens) [TaxId: 9606]
Score = 50.9 bits (121), Expect = 6e-08
Identities = 28/119 (23%), Positives = 40/119 (33%), Gaps = 17/119 (14%)
Query: 141 IKPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFS-------------HRSGRDLVNM 187
I PG VL G+ SG +S VG G V + E R L ++
Sbjct: 96 INPGDTVLEAGSGSGGMSLFLSKAVGSQGRVISFEVRKDHHDLAKKNYKHWRDSWKLSHV 155
Query: 188 AKKRTNVIPIIEDARHPAKYRMLVGMVDVIFSDVAQPDQARILALNASYFLKAGGHFVI 246
+ NV I +D A + D + D+ P + LK GG +
Sbjct: 156 EEWPDNVDFIHKDISG-ATEDIKSLTFDAVALDMLNPHVTLPVFYPH---LKHGGVCAV 210
|
| >d1nkva_ c.66.1.21 (A:) Hypothetical Protein YjhP {Escherichia coli [TaxId: 562]} Length = 245 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Hypothetical Protein YjhP domain: Hypothetical Protein YjhP species: Escherichia coli [TaxId: 562]
Score = 46.5 bits (109), Expect = 1e-06
Identities = 25/131 (19%), Positives = 44/131 (33%), Gaps = 4/131 (3%)
Query: 117 EYRIWNPFRSKLAAAVLGGVDNIWIKPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEF 176
E+RI NPF + A + + +KPG R+L LG+ SG + + G G +
Sbjct: 10 EHRIHNPFTEEKYATLG---RVLRMKPGTRILDLGSGSGEMLCTWARDHGITGTGIDMSS 66
Query: 177 SHRSGRDLVNMAKKRTNVIPIIEDARHPAKYRMLVGMVDVIFSDVAQPDQARILALNASY 236
+ + + I + + + + A +
Sbjct: 67 LFTAQAKRRAEELGVSERVHFIHNDAAGYVANEKCDVAACVGATWIAGGFAGAEE-LLAQ 125
Query: 237 FLKAGGHFVIS 247
LK GG +I
Sbjct: 126 SLKPGGIMLIG 136
|
| >d1i9ga_ c.66.1.13 (A:) Probable methyltransferase Rv2118c {Mycobacterium tuberculosis [TaxId: 1773]} Length = 264 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: tRNA(1-methyladenosine) methyltransferase-like domain: Probable methyltransferase Rv2118c species: Mycobacterium tuberculosis [TaxId: 1773]
Score = 41.5 bits (97), Expect = 5e-05
Identities = 31/115 (26%), Positives = 42/115 (36%), Gaps = 19/115 (16%)
Query: 141 IKPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKRT-------- 192
I PGARVL GA SG + VGP G V + E D A++
Sbjct: 94 IFPGARVLEAGAGSGALTLSLLRAVGPAGQVISYEQR----ADHAEHARRNVSGCYGQPP 149
Query: 193 -NVIPIIEDARHPAKYRMLVGMVDVIFSDVAQPDQARILALNASYFLKAGGHFVI 246
N ++ D + G VD D+ P + S L AGG ++
Sbjct: 150 DNWRLVVSDLAD---SELPDGSVDRAVLDMLAPWEV---LDAVSRLLVAGGVLMV 198
|
| >d1yb2a1 c.66.1.13 (A:6-255) Hypothetical protein Ta0852 {Thermoplasma acidophilum [TaxId: 2303]} Length = 250 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: tRNA(1-methyladenosine) methyltransferase-like domain: Hypothetical protein Ta0852 species: Thermoplasma acidophilum [TaxId: 2303]
Score = 40.8 bits (95), Expect = 9e-05
Identities = 20/111 (18%), Positives = 38/111 (34%), Gaps = 10/111 (9%)
Query: 141 IKPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKK---RTNVIPI 197
++PG +L +G SG S++ + G + VE D + A I
Sbjct: 83 LRPGMDILEVGVGSGNMSSYILYALNGKGTLTVVERD----EDNLKKAMDNLSEFYDIGN 138
Query: 198 IEDARHPAKYRMLVGMVDVIFSDVAQPDQARILALNASYFLKAGGHFVISI 248
+ +R + M D + +D+ P + +K G +
Sbjct: 139 VRTSRSDIADFISDQMYDAVIADIPDPWNHVQKIASM---MKPGSVATFYL 186
|
| >d2p41a1 c.66.1.25 (A:8-264) An RNA cap (nucleoside-2'-O-)-methyltransferase domain of RNA polymerase NS5 {Dengue virus 2 [TaxId: 11060]} Length = 257 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: mRNA cap methylase domain: An RNA cap (nucleoside-2'-O-)-methyltransferase domain of RNA polymerase NS5 species: Dengue virus 2 [TaxId: 11060]
Score = 37.6 bits (87), Expect = 0.001
Identities = 18/133 (13%), Positives = 42/133 (31%), Gaps = 12/133 (9%)
Query: 124 FRSKLAAAVLGGVDNIWIKPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRD 183
S+ +A + V+ + P +V+ LG G S+ + V + +
Sbjct: 47 AVSRGSAKLRWFVERNLVTPEGKVVDLGCGRGGW-SYYCGGLKNVREVKGLTKGGPGHEE 105
Query: 184 LVNMAKKRTNVIPIIEDARHPAKYRMLVGMVDVIFSDVA------QPDQARILAL--NAS 235
+ M+ T ++ + + D + D+ + R L +
Sbjct: 106 PIPMS---TYGWNLVRLQSGVDVFFIPPERCDTLLCDIGESSPNPTVEAGRTLRVLNLVE 162
Query: 236 YFLKAGGHFVISI 248
+L F + +
Sbjct: 163 NWLSNNTQFCVKV 175
|
| >d1vqol1 c.12.1.1 (L:1-150) Ribosomal protein L15 (L15p) {Archaeon Haloarcula marismortui [TaxId: 2238]} Length = 150 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Ribosomal proteins L15p and L18e superfamily: Ribosomal proteins L15p and L18e family: Ribosomal proteins L15p and L18e domain: Ribosomal protein L15 (L15p) species: Archaeon Haloarcula marismortui [TaxId: 2238]
Score = 35.4 bits (81), Expect = 0.003
Identities = 19/103 (18%), Positives = 25/103 (24%), Gaps = 2/103 (1%)
Query: 14 RGGRGDGGGRGRGGGRGGGGGRGGGSAMRGRGGGRGGGRGGGRGRGGGGMKGGSKVVVEP 73
RG R GGG R G G RGG G+ K +
Sbjct: 8 RGSRTHGGGSH--KNRRGAGHRGGRGDAGRDKHEFHNHEPLGKSGFKRPQKVQEEAATID 65
Query: 74 HRHEGVFIAKGKEDALVTKNLVAGEAVYNEKRISVQNEDGTKV 116
R + D + + + D KV
Sbjct: 66 VREIDENVTLLAADDVAEVEDGGFRVDVRDVVEEADDADYVKV 108
|
| >d2j01p1 c.12.1.1 (P:5-150) Ribosomal protein L15 (L15p) {Thermus thermophilus [TaxId: 274]} Length = 146 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Ribosomal proteins L15p and L18e superfamily: Ribosomal proteins L15p and L18e family: Ribosomal proteins L15p and L18e domain: Ribosomal protein L15 (L15p) species: Thermus thermophilus [TaxId: 274]
Score = 35.0 bits (80), Expect = 0.004
Identities = 12/39 (30%), Positives = 16/39 (41%)
Query: 14 RGGRGDGGGRGRGGGRGGGGGRGGGSAMRGRGGGRGGGR 52
R GRG G G G+ RG G + ++ GG
Sbjct: 14 RVGRGPGSGHGKTATRGHKGQKSRSGGLKDPRRFEGGRS 52
|
Homologous Domains Detected by HHsearch 
Original result of HHsearch against SCOP70(version1.75) database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Probability ![]() |
| Query | 305 | |||
| d1g8aa_ | 227 | Fibrillarin homologue {Archaeon Pyrococcus horikos | 100.0 | |
| d1g8sa_ | 230 | Fibrillarin homologue {Archaeon Methanococcus jann | 100.0 | |
| d1nt2a_ | 209 | Fibrillarin homologue {Archaeon Archaeoglobus fulg | 100.0 | |
| d1ixka_ | 313 | Hypothetical methyltransferase PH1374 {Archaeon Py | 99.85 | |
| d1sqga2 | 284 | Ribosomal RNA small subunit methyltransferase B, R | 99.85 | |
| d2b9ea1 | 293 | NOL1R {Human (Homo sapiens) [TaxId: 9606]} | 99.84 | |
| d1yb2a1 | 250 | Hypothetical protein Ta0852 {Thermoplasma acidophi | 99.73 | |
| d1nkva_ | 245 | Hypothetical Protein YjhP {Escherichia coli [TaxId | 99.7 | |
| d1i9ga_ | 264 | Probable methyltransferase Rv2118c {Mycobacterium | 99.7 | |
| d1vl5a_ | 231 | Hypothetical protein BH2331 {Bacillus halodurans [ | 99.69 | |
| d1o54a_ | 266 | Hypothetical protein TM0748 {Thermotoga maritima [ | 99.68 | |
| d1xxla_ | 234 | Hypothetical protein YcgJ {Bacillus subtilis [TaxI | 99.67 | |
| d2b25a1 | 324 | Hypothetical protein FLJ20628 {Human (Homo sapiens | 99.67 | |
| d1l3ia_ | 186 | Precorrin-6Y methyltransferase (CbiT) {Archaeon Me | 99.66 | |
| d2o57a1 | 282 | Putative sarcosine dimethylglycine methyltransfera | 99.63 | |
| d1im8a_ | 225 | Hypothetical protein HI0319 (YecO) {Haemophilus in | 99.62 | |
| d2nxca1 | 254 | PrmA-like protein TTHA0656 (TT0836) {Thermus therm | 99.61 | |
| d2ex4a1 | 222 | Adrenal gland protein AD-003 (C9orf32) {Human (Hom | 99.58 | |
| d1dl5a1 | 213 | Protein-L-isoaspartyl O-methyltransferase {Thermot | 99.57 | |
| d1dusa_ | 194 | Hypothetical protein MJ0882 {Archaeon Methanococcu | 99.57 | |
| d1vlma_ | 208 | Possible histamine N-methyltransferase TM1293 {The | 99.56 | |
| d1kpga_ | 285 | CmaA1 {Mycobacterium tuberculosis [TaxId: 1773]} | 99.56 | |
| d1ve3a1 | 226 | Hypothetical protein PH0226 {Archaeon Pyrococcus h | 99.56 | |
| d1kpia_ | 291 | CmaA2 {Mycobacterium tuberculosis [TaxId: 1773]} | 99.55 | |
| d2i6ga1 | 198 | Putative methyltransferase TehB {Salmonella typhim | 99.55 | |
| d2frna1 | 260 | Hypothetical protein PH0793 {Pyrococcus horikoshii | 99.54 | |
| d1i1na_ | 224 | Protein-L-isoaspartyl O-methyltransferase {Human ( | 99.54 | |
| d1xtpa_ | 254 | Hypothetical protein Lmaj004091aaa (LmjF30.0810) { | 99.54 | |
| d2b3ta1 | 274 | N5-glutamine methyltransferase, HemK {Escherichia | 99.54 | |
| d1pjza_ | 201 | Thiopurine S-methyltransferase {Pseudomonas syring | 99.53 | |
| d1wzna1 | 251 | Hypothetical methyltransferase PH1305 {Archaeon Py | 99.52 | |
| d2fk8a1 | 280 | Methoxy mycolic acid synthase 4, Mma4 {Mycobacteri | 99.52 | |
| d2bzga1 | 229 | Thiopurine S-methyltransferase {Human (Homo sapien | 99.52 | |
| d1p91a_ | 268 | rRNA methyltransferase RlmA {Escherichia coli [Tax | 99.51 | |
| d2avna1 | 246 | Hypothetical methyltransferase TM1389 {Thermotoga | 99.51 | |
| d1tw3a2 | 253 | Carminomycin 4-O-methyltransferase {Streptomyces p | 99.5 | |
| d2fcaa1 | 204 | tRNA (guanine-N(7)-)-methyltransferase TrmB {Bacil | 99.5 | |
| d1y8ca_ | 246 | Putative methyltransferase CAC2371 {Clostridium ac | 99.49 | |
| d2gh1a1 | 281 | Methyltransferase BC2162 {Bacillus cereus [TaxId: | 99.48 | |
| d1yzha1 | 204 | tRNA (guanine-N(7)-)-methyltransferase TrmB {Strep | 99.48 | |
| d1zx0a1 | 229 | Guanidinoacetate methyltransferase {Human (Homo sa | 99.48 | |
| d1ri5a_ | 252 | mRNA cap (Guanine N-7) methyltransferase {Fungus ( | 99.47 | |
| d1wxxa2 | 318 | Hypothetical protein TTHA1280, middle and C-termin | 99.45 | |
| d1vbfa_ | 224 | Protein-L-isoaspartyl O-methyltransferase {Sulfolo | 99.45 | |
| d2as0a2 | 324 | Hypothetical protein PH1915, middle and C-terminal | 99.45 | |
| d2b78a2 | 317 | Hypothetical protein SMu776, middle and C-terminal | 99.45 | |
| d2p7ia1 | 225 | Hypothetical protein ECA1738 {Erwinia carotovora [ | 99.43 | |
| d2a14a1 | 257 | Indolethylamine N-methyltransferase, INMT {Human ( | 99.41 | |
| d1qzza2 | 256 | Aclacinomycin-10-hydroxylase RdmB {Streptomyces pu | 99.39 | |
| d1r18a_ | 223 | Protein-L-isoaspartyl O-methyltransferase {Fruit f | 99.35 | |
| d1jg1a_ | 215 | Protein-L-isoaspartyl O-methyltransferase {Archaeo | 99.32 | |
| d1uwva2 | 358 | rRNA (Uracil-5-)-methyltransferase RumA, catalytic | 99.3 | |
| d2esra1 | 152 | Putative methyltransferase SPy1538 {Streptococcus | 99.3 | |
| d1xvaa_ | 292 | Glycine N-methyltransferase {Rat (Rattus norvegicu | 99.3 | |
| d2igta1 | 309 | Putative methyltransferase Atu0340 {Agrobacterium | 99.3 | |
| d2g72a1 | 263 | Phenylethanolamine N-methyltransferase, PNMTase {H | 99.28 | |
| d1ej0a_ | 180 | RNA methyltransferase FtsJ {Escherichia coli [TaxI | 99.25 | |
| d1ne2a_ | 197 | Hypothetical protein Ta1320 {Archaeon Thermoplasma | 99.23 | |
| d1jqea_ | 280 | Histamine methyltransferase {Human (Homo sapiens) | 99.22 | |
| d2fpoa1 | 183 | Methylase YhhF {Escherichia coli [TaxId: 562]} | 99.22 | |
| d2fhpa1 | 182 | Putative methylase EF2452 {Enterococcus faecalis [ | 99.21 | |
| d1ws6a1 | 171 | Methyltransferase TTHA0928 {Thermus thermophilus [ | 99.2 | |
| d1g6q1_ | 328 | Arginine methyltransferase, HMT1 {Baker's yeast (S | 99.19 | |
| d1nw3a_ | 328 | Catalytic, N-terminal domain of histone methyltran | 99.19 | |
| d2fyta1 | 311 | Protein arginine N-methyltransferase 3, PRMT3 {Hum | 99.17 | |
| d1m6ya2 | 192 | TM0872, methyltransferase domain {Thermotoga marit | 99.17 | |
| d1u2za_ | 406 | Catalytic, N-terminal domain of histone methyltran | 99.15 | |
| d1wy7a1 | 201 | Hypothetical protein PH1948 {Archaeon Pyrococcus h | 99.13 | |
| d1oria_ | 316 | Protein arginine N-methyltransferase 1, PRMT1 {Rat | 99.12 | |
| d1nv8a_ | 271 | N5-glutamine methyltransferase, HemK {Thermotoga m | 99.1 | |
| d2ifta1 | 183 | Putative methylase HI0767 {Haemophilus influenzae | 99.09 | |
| d2avda1 | 219 | COMT domain-containing protein 1, COMTD1 {Human (H | 99.09 | |
| d2f8la1 | 328 | Hypothetical protein Lmo1582 {Listeria monocytogen | 99.09 | |
| d1mjfa_ | 276 | Putative spermidine synthetase PF0127 (SpeE) {Arch | 99.04 | |
| d1fp1d2 | 244 | Chalcone O-methyltransferase {Alfalfa (Medicago sa | 99.03 | |
| d2h00a1 | 250 | Methyltransferase 10 domain containing protein MET | 99.02 | |
| d2cl5a1 | 214 | Catechol O-methyltransferase, COMT {Rat (Rattus no | 99.0 | |
| d1susa1 | 227 | Caffeoyl-CoA O-methyltransferase {Alfalfa (Medicag | 98.97 | |
| d1uira_ | 312 | Spermidine synthase {Thermus thermophilus [TaxId: | 98.94 | |
| d2o07a1 | 285 | Spermidine synthase {Human (Homo sapiens) [TaxId: | 98.89 | |
| d1inla_ | 295 | Spermidine synthase {Thermotoga maritima [TaxId: 2 | 98.87 | |
| d2ih2a1 | 223 | DNA methylase TaqI, N-terminal domain {Thermus aqu | 98.86 | |
| d1iy9a_ | 274 | Spermidine synthase {Bacillus subtilis [TaxId: 142 | 98.86 | |
| d2b2ca1 | 312 | Spermidine synthase {Caenorhabditis elegans [TaxId | 98.79 | |
| d1fp2a2 | 244 | Isoflavone O-methyltransferase {Alfalfa (Medicago | 98.78 | |
| d1xj5a_ | 290 | Spermidine synthase {Thale cress (Arabidopsis thal | 98.74 | |
| d1kyza2 | 243 | Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltra | 98.73 | |
| d1xdza_ | 239 | Glucose-inhibited division protein B (GidB) {Bacil | 98.71 | |
| d2okca1 | 425 | Type I restriction enzyme StySJI M protein {Bacter | 98.67 | |
| d1jsxa_ | 207 | Glucose-inhibited division protein B (GidB) {Esche | 98.67 | |
| d1qama_ | 235 | rRNA adenine dimethylase {Bacillus subtilis, Ermc' | 98.64 | |
| d2bm8a1 | 232 | Cephalosporin hydroxylase CmcI {Streptomyces clavu | 98.58 | |
| d1wg8a2 | 182 | TM0872, methyltransferase domain {Thermus thermoph | 98.55 | |
| d2p41a1 | 257 | An RNA cap (nucleoside-2'-O-)-methyltransferase do | 98.46 | |
| d1af7a2 | 193 | Chemotaxis receptor methyltransferase CheR, C-term | 98.45 | |
| d2ar0a1 | 524 | M.EcoKI {Escherichia coli [TaxId: 562]} | 98.44 | |
| d1yuba_ | 245 | rRNA adenine dimethylase {Streptococcus pneumoniae | 98.38 | |
| d1zq9a1 | 278 | Probable dimethyladenosine transferase {Human (Hom | 98.32 | |
| d1qyra_ | 252 | High level kasugamycin resistance protein KsgA {Es | 98.08 | |
| d2dula1 | 375 | N(2),N(2)-dimethylguanosine tRNA methyltransferase | 97.99 | |
| d1dcta_ | 324 | DNA methylase HaeIII {Haemophilus aegyptius [TaxId | 97.9 | |
| d2c7pa1 | 327 | DNA methylase HhaI {Haemophilus haemolyticus [TaxI | 97.77 | |
| d1g55a_ | 343 | DNMT2 {Human (Homo sapiens) [TaxId: 9606]} | 97.52 | |
| d2oyra1 | 250 | Hypothetical protein YhiQ {Shigella flexneri [TaxI | 97.35 | |
| d1i4wa_ | 322 | Transcription factor sc-mtTFB {Baker's yeast (Sacc | 97.31 | |
| d1e3ja2 | 170 | Ketose reductase (sorbitol dehydrogenase) {Silverl | 97.2 | |
| d1jqba2 | 174 | Bacterial secondary alcohol dehydrogenase {Clostri | 97.05 | |
| d1kola2 | 195 | Formaldehyde dehydrogenase {Pseudomonas putida [Ta | 97.03 | |
| d1vj0a2 | 182 | Hypothetical protein TM0436 {Thermotoga maritima [ | 96.97 | |
| d1piwa2 | 168 | Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeas | 96.96 | |
| d1pl8a2 | 171 | Ketose reductase (sorbitol dehydrogenase) {Human ( | 96.72 | |
| d1o9ga_ | 249 | rRNA methyltransferase AviRa {Streptomyces viridoc | 96.55 | |
| d1f8fa2 | 174 | Benzyl alcohol dehydrogenase {Acinetobacter calcoa | 96.52 | |
| d1e3ia2 | 174 | Alcohol dehydrogenase {Mouse (Mus musculus), class | 96.39 | |
| d1llua2 | 166 | Alcohol dehydrogenase {Pseudomonas aeruginosa [Tax | 96.37 | |
| d1uufa2 | 168 | Hypothetical protein YahK {Escherichia coli [TaxId | 96.35 | |
| d1yb5a2 | 174 | Quinone oxidoreductase {Human (Homo sapiens) [TaxI | 95.93 | |
| d1jvba2 | 170 | Alcohol dehydrogenase {Archaeon Sulfolobus solfata | 95.71 | |
| d1eg2a_ | 279 | m.RsrI N6 adenosine-specific DNA methyltransferase | 95.25 | |
| d1booa_ | 320 | m.PvuII N4 cytosine-specific DNA methyltransferase | 95.24 | |
| d1g60a_ | 256 | Methyltransferase mboII {Moraxella bovis [TaxId: 4 | 95.2 | |
| d1rjwa2 | 168 | Alcohol dehydrogenase {Bacillus stearothermophilus | 95.16 | |
| d1g60a_ | 256 | Methyltransferase mboII {Moraxella bovis [TaxId: 4 | 95.14 | |
| d2g5ca2 | 171 | Prephenate dehydrogenase TyrA {Aquifex aeolicus [T | 94.95 | |
| d1h2ba2 | 172 | Alcohol dehydrogenase {Archaeon Aeropyrum pernix [ | 94.86 | |
| d1eg2a_ | 279 | m.RsrI N6 adenosine-specific DNA methyltransferase | 94.52 | |
| d1lssa_ | 132 | Ktn Mja218 {Archaeon Methanococcus jannaschii [Tax | 94.52 | |
| d1qora2 | 179 | Quinone oxidoreductase {Escherichia coli [TaxId: 5 | 94.34 | |
| d1p0fa2 | 174 | Alcohol dehydrogenase {Frog (Rana perezi) [TaxId: | 94.28 | |
| d1iz0a2 | 171 | Quinone oxidoreductase {Thermus thermophilus [TaxI | 94.24 | |
| d2fzwa2 | 176 | Alcohol dehydrogenase {Human (Homo sapiens), diffe | 94.06 | |
| d1v3va2 | 182 | Leukotriene b4 12-hydroxydehydrogenase/prostagland | 93.86 | |
| d1d1ta2 | 176 | Alcohol dehydrogenase {Human (Homo sapiens), diffe | 93.67 | |
| d2f1ka2 | 165 | Prephenate dehydrogenase TyrA {Synechocystis sp. p | 93.66 | |
| d1xa0a2 | 176 | B. subtilis YhfP homologue {Bacillus stearothermop | 93.64 | |
| d2jhfa2 | 176 | Alcohol dehydrogenase {Horse (Equus caballus) [Tax | 93.61 | |
| d1pjca1 | 168 | L-alanine dehydrogenase {Phormidium lapideum [TaxI | 93.57 | |
| d1m6ex_ | 359 | Salicylic acid carboxyl methyltransferase (SAMT) { | 93.55 | |
| d1pqwa_ | 183 | Putative enoyl reductase domain of polyketide synt | 93.2 | |
| d2fy8a1 | 129 | Potassium channel-related protein MthK {Archaeon M | 93.13 | |
| d1cdoa2 | 175 | Alcohol dehydrogenase {Cod (Gadus callarias) [TaxI | 93.09 | |
| d2hmva1 | 134 | Ktn bsu222 {Bacillus subtilis [TaxId: 1423]} | 93.05 | |
| d1booa_ | 320 | m.PvuII N4 cytosine-specific DNA methyltransferase | 92.91 | |
| d1zkda1 | 365 | Hypothetical protein RPA4359 {Rhodopseudomonas pal | 92.49 | |
| d1vj1a2 | 187 | Putative zinc-binding alcohol dehydrogenase {Mouse | 91.78 | |
| d1id1a_ | 153 | Rck domain from putative potassium channel Kch {Es | 91.59 | |
| d1xg5a_ | 257 | Putative dehydrogenase ARPG836 (MGC4172) {Human (H | 91.53 | |
| d1wmaa1 | 275 | Carbonyl reductase/20beta-hydroxysteroid dehydroge | 91.28 | |
| d1luaa1 | 191 | Methylene-tetrahydromethanopterin dehydrogenase {M | 90.89 | |
| d2c07a1 | 251 | beta-keto acyl carrier protein reductase {Malaria | 90.07 | |
| d1gu7a2 | 189 | 2,4-dienoyl-CoA reductase {Yeast (Candida tropical | 89.87 | |
| d1bg6a2 | 184 | N-(1-D-carboxylethyl)-L-norvaline dehydrogenase {A | 89.87 | |
| d1ulua_ | 256 | Enoyl-ACP reductase {Thermus thermophilus [TaxId: | 89.66 | |
| d1tt7a2 | 167 | Hypothetical protein YhfP {Bacillus subtilis [TaxI | 89.57 | |
| d1zema1 | 260 | Xylitol dehydrogenase {Gluconobacter oxydans [TaxI | 89.1 | |
| d2blla1 | 342 | Polymyxin resistance protein ArnA (PrmI) {Escheric | 88.38 | |
| d1orra_ | 338 | CDP-tyvelose-2-epimerase {Salmonella typhi [TaxId: | 88.16 | |
| d2py6a1 | 395 | Methyltransferase FkbM {Methylobacillus flagellatu | 87.68 | |
| d2bgka1 | 268 | Rhizome secoisolariciresinol dehydrogenase {Mayapp | 87.4 | |
| d2ae2a_ | 259 | Tropinone reductase {Jimsonweed (Datura stramonium | 87.33 | |
| d2pgda2 | 176 | 6-phosphogluconate dehydrogenase {Sheep (Ovis orie | 87.21 | |
| d1zk4a1 | 251 | R-specific alcohol dehydrogenase {Lactobacillus br | 86.53 | |
| d1rkxa_ | 356 | CDP-glucose-4,6-dehydratase {Yersinia pseudotuberc | 86.33 | |
| d1vl8a_ | 251 | Gluconate 5-dehydrogenase {Thermotoga maritima [Ta | 85.97 | |
| d1yb1a_ | 244 | 17-beta-hydroxysteroid dehydrogenase type XI {Huma | 84.07 | |
| d1l7da1 | 183 | Nicotinamide nucleotide transhydrogenase dI compon | 83.45 | |
| d1q7ba_ | 243 | beta-keto acyl carrier protein reductase {Escheric | 83.18 | |
| d1fmca_ | 255 | 7-alpha-hydroxysteroid dehydrogenase {Escherichia | 83.17 | |
| d1ae1a_ | 258 | Tropinone reductase {Jimsonweed (Datura stramonium | 82.93 | |
| d1qsga_ | 258 | Enoyl-ACP reductase {Escherichia coli [TaxId: 562] | 82.87 | |
| d1vpda2 | 161 | Hydroxyisobutyrate dehydrogenase {Salmonella typhi | 82.63 | |
| d1snya_ | 248 | Carbonyl reductase sniffer {Fruit fly (Drosophila | 82.54 | |
| d1g0oa_ | 272 | 1,3,8-trihydroxynaphtalene reductase (THNR, naphto | 82.19 | |
| d1hxha_ | 253 | 3beta/17beta hydroxysteroid dehydrogenase {Comamon | 81.95 | |
| d2rhca1 | 257 | beta-keto acyl carrier protein reductase {Streptom | 81.37 | |
| d2a4ka1 | 241 | beta-keto acyl carrier protein reductase {Thermus | 80.61 | |
| d1y1pa1 | 342 | Aldehyde reductase II {Sporobolomyces salmonicolor | 80.37 | |
| d2gdza1 | 254 | 15-hydroxyprostaglandin dehydrogenase, PGDH {Human | 80.26 | |
| d1udca_ | 338 | Uridine diphosphogalactose-4-epimerase (UDP-galact | 80.23 | |
| d1ja9a_ | 259 | 1,3,6,8-tetrahydroxynaphthalene reductase {Rice bl | 80.22 |
| >d1g8aa_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Fibrillarin homologue domain: Fibrillarin homologue species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=100.00 E-value=2.8e-46 Score=326.86 Aligned_cols=223 Identities=50% Similarity=0.786 Sum_probs=206.4
Q ss_pred eeecccccCceEEEeC--CcceeeeccccCCccccCcceeEeecCCCceeeeeecCchhhHHHHHHHccccccCCCCCCE
Q 021911 69 VVVEPHRHEGVFIAKG--KEDALVTKNLVAGEAVYNEKRISVQNEDGTKVEYRIWNPFRSKLAAAVLGGVDNIWIKPGAR 146 (305)
Q Consensus 69 ~~~~~~~~~gv~~~~~--~~~~l~t~~~~~~~~~y~e~~~~~~d~~~~~~~~~~~~~~~s~l~a~ll~~l~~~~~~~g~~ 146 (305)
|.|+||+++|||+... +.+.|+|+|++|++++|+|+++..++. |||.|||++|+|+|.|+..|+++.++|+++
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~l~t~n~~~g~~vyge~~~~~~~~-----e~R~w~p~rSKlaa~i~~~l~~l~i~pG~~ 76 (227)
T d1g8aa_ 2 VEVKKHKFPGVYTVIDDDGSERIATKNLVPGQRVYGERVIKWEGE-----EYRIWNPNRSKLGAAIMNGLKNFPIKPGKS 76 (227)
T ss_dssp CEEEECSSTTEEEEECSSSCSEEEEECSSTTCCCTTCCEEEETTE-----EEEECCTTTCHHHHHHHTTCCCCCCCTTCE
T ss_pred cEEeecccCceEEEEeCCCceEEEEecCCCCCcccCceEEEcCCe-----eEEEECCCccHHHHHHHccccccccCCCCE
Confidence 6799999999998876 456789999999999999999988764 999999999999999999999999999999
Q ss_pred EEEEecCCCccHHHHHhhhCCCcEEEEEeCChHHHHHHHHHHHcCCCeEEEEccCCCCcccccCCCcEeEEEEeCCChhH
Q 021911 147 VLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKRTNVIPIIEDARHPAKYRMLVGMVDVIFSDVAQPDQ 226 (305)
Q Consensus 147 VLDlG~G~G~~t~~la~~~~~~~~V~avD~s~~~~~~l~~~a~~~~nI~~~~~D~~~~~~~~~~~~~fD~V~~d~~~~~~ 226 (305)
|||+|||+|++++|||+++++.+.|||||+|+++++++.+.++.+.|+.+++.|+..+..+.....++|+|++|+++++|
T Consensus 77 VLDlGaGsG~~t~~la~~VG~~G~V~aVD~s~~~l~~a~~~a~~~~~~~~i~~d~~~~~~~~~~~~~vD~i~~d~~~~~~ 156 (227)
T d1g8aa_ 77 VLYLGIASGTTASHVSDIVGWEGKIFGIEFSPRVLRELVPIVEERRNIVPILGDATKPEEYRALVPKVDVIFEDVAQPTQ 156 (227)
T ss_dssp EEEETTTSTTHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHSSCTTEEEEECCTTCGGGGTTTCCCEEEEEECCCSTTH
T ss_pred EEEeccCCCHHHHHHHHHhCCCCEEEEEeCcHHHHHHHHHHHHhcCCceEEEEECCCcccccccccceEEEEEEccccch
Confidence 99999999999999999999999999999999999999999988899999999999888777777899999999999999
Q ss_pred HHHHHHHHhccCCCCcEEEEEEcccccCCCCchhhhHHHHHHHHHHCCCcEeEEeecCCCCCceEEEEEEE
Q 021911 227 ARILALNASYFLKAGGHFVISIKANCIDSTVPAEAVFQSEVKKLQQDQFKPFEQVTLEPFERDHACVVGGY 297 (305)
Q Consensus 227 ~~~l~~~a~~~LkpGG~lv~s~~~~~i~~~~~~~~v~~~~~~~l~~~Gf~~~e~~~l~p~~~~~~~vv~~~ 297 (305)
.+.+..++.++|||||+++++++++|++.+.+++.++. +++.+.+.+|+++++++++||+++|++|+++|
T Consensus 157 ~~~~l~~~~~~LkpgG~lvi~~ka~~~~~~~~~~~v~~-~v~~l~~~gf~iie~i~L~p~~~~H~~vv~rK 226 (227)
T d1g8aa_ 157 AKILIDNAEVYLKRGGYGMIAVKSRSIDVTKEPEQVFR-EVERELSEYFEVIERLNLEPYEKDHALFVVRK 226 (227)
T ss_dssp HHHHHHHHHHHEEEEEEEEEEEEGGGTCTTSCHHHHHH-HHHHHHHTTSEEEEEEECTTTSSSEEEEEEEC
T ss_pred HHHHHHHHHHhcccCCeEEEEEECCccCCCCCHHHHHH-HHHHHHHcCCEEEEEEcCCCCCCceEEEEEEe
Confidence 88877799999999999999999999999998888875 56667778999999999999999999999986
|
| >d1g8sa_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Fibrillarin homologue domain: Fibrillarin homologue species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=100.00 E-value=1.5e-44 Score=316.84 Aligned_cols=224 Identities=44% Similarity=0.720 Sum_probs=207.2
Q ss_pred ecccccCceEEEeCCcce--eeeccccCCccccCcceeEeecCCCceeeeeecCchhhHHHHHHHccccccCCCCCCEEE
Q 021911 71 VEPHRHEGVFIAKGKEDA--LVTKNLVAGEAVYNEKRISVQNEDGTKVEYRIWNPFRSKLAAAVLGGVDNIWIKPGARVL 148 (305)
Q Consensus 71 ~~~~~~~gv~~~~~~~~~--l~t~~~~~~~~~y~e~~~~~~d~~~~~~~~~~~~~~~s~l~a~ll~~l~~~~~~~g~~VL 148 (305)
...|+++|||+.+.+++. |+|+|++|++++|+|+++.+++. |||.|||++|+|+|.++..|+.+.++|+++||
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~l~t~~~~~g~~~y~e~~~~~~~~-----e~r~w~p~rsklaA~i~~gl~~l~ikpG~~VL 79 (230)
T d1g8sa_ 5 KIKEIFENIYEVDLGDGLKRIATKSIVKGKKVYDEKIIKIGDE-----EYRIWNPNKSKLAAAIIKGLKVMPIKRDSKIL 79 (230)
T ss_dssp EEEEETTTEEEEECSSSCCEEEEECSSTTCCSSSCCEEEETTE-----EEEECCTTTCHHHHHHHTTCCCCCCCTTCEEE
T ss_pred ccccccCceEEEEcCCCceeeEecCCCCCCCccCceeeecCCc-----eeeeECCCccHHHHHHHhhHHhCCCCCCCEEE
Confidence 346899999999987754 89999999999999999988764 99999999999999999999999999999999
Q ss_pred EEecCCCccHHHHHhhhCCCcEEEEEeCChHHHHHHHHHHHcCCCeEEEEccCCCCcccccCCCcEeEEEEeCCChhHHH
Q 021911 149 YLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKRTNVIPIIEDARHPAKYRMLVGMVDVIFSDVAQPDQAR 228 (305)
Q Consensus 149 DlG~G~G~~t~~la~~~~~~~~V~avD~s~~~~~~l~~~a~~~~nI~~~~~D~~~~~~~~~~~~~fD~V~~d~~~~~~~~ 228 (305)
|||||+|+++++||+.+ +.+.|||||+|+++++++.+.+.+++|+.++..|+..+..+......+|+++++..+++|.+
T Consensus 80 DlGcGsG~~~~~la~~~-~~g~V~aVDiS~~~i~~a~~~a~~~~ni~~i~~d~~~~~~~~~~~~~v~~i~~~~~~~~~~~ 158 (230)
T d1g8sa_ 80 YLGASAGTTPSHVADIA-DKGIVYAIEYAPRIMRELLDACAERENIIPILGDANKPQEYANIVEKVDVIYEDVAQPNQAE 158 (230)
T ss_dssp EESCCSSHHHHHHHHHT-TTSEEEEEESCHHHHHHHHHHTTTCTTEEEEECCTTCGGGGTTTCCCEEEEEECCCSTTHHH
T ss_pred EeCEEcCHHHHHHHHhC-CCCEEEEEeCcHHHHHHHHHHHhhhcccceEEEeeccCcccccccceeEEeeccccchHHHH
Confidence 99999999999999975 67899999999999999999988889999999999998877666678888999999999888
Q ss_pred HHHHHHhccCCCCcEEEEEEcccccCCCCchhhhHHHHHHHHHHCCCcEeEEeecCCCCCceEEEEEEEcCC
Q 021911 229 ILALNASYFLKAGGHFVISIKANCIDSTVPAEAVFQSEVKKLQQDQFKPFEQVTLEPFERDHACVVGGYRMP 300 (305)
Q Consensus 229 ~l~~~a~~~LkpGG~lv~s~~~~~i~~~~~~~~v~~~~~~~l~~~Gf~~~e~~~l~p~~~~~~~vv~~~~~~ 300 (305)
.+..++.++|||||++++++++.|++.+.++..++.++++.|+++||+++++++++||+++|++|+|.|+.+
T Consensus 159 ~~l~~~~r~LKpgG~~~i~~k~~~~d~~~~~~~~~~e~~~~L~~aGF~ive~idL~py~~~H~~vvg~y~~~ 230 (230)
T d1g8sa_ 159 ILIKNAKWFLKKGGYGMIAIKARSIDVTKDPKEIFKEQKEILEAGGFKIVDEVDIEPFEKDHVMFVGIWEGK 230 (230)
T ss_dssp HHHHHHHHHEEEEEEEEEEEEGGGTCSSSCHHHHHHHHHHHHHHHTEEEEEEEECTTTSTTEEEEEEEECCC
T ss_pred HHHHHHHHhcccCceEEEEeeccccCCCCCHHHHHHHHHHHHHHcCCEEEEEecCCCCcCCeEEEEEEecCC
Confidence 877799999999999999999999999999999999999999999999999999999999999999999864
|
| >d1nt2a_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Fibrillarin homologue domain: Fibrillarin homologue species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]
Probab=100.00 E-value=2e-34 Score=248.62 Aligned_cols=204 Identities=45% Similarity=0.731 Sum_probs=179.0
Q ss_pred cCceEEEeCCcceeeeccccCCccccCcceeEeecCCCceeeeeecCchhhHHHHHHHccccccCCCCCCEEEEEecCCC
Q 021911 76 HEGVFIAKGKEDALVTKNLVAGEAVYNEKRISVQNEDGTKVEYRIWNPFRSKLAAAVLGGVDNIWIKPGARVLYLGAASG 155 (305)
Q Consensus 76 ~~gv~~~~~~~~~l~t~~~~~~~~~y~e~~~~~~d~~~~~~~~~~~~~~~s~l~a~ll~~l~~~~~~~g~~VLDlG~G~G 155 (305)
.++||.. ++.|+|++.. ...|+|+.+ + +||.|+|++|+|++.++.. .++.++|+++|||+|||+|
T Consensus 4 ~~~~~~~---~~~l~~~~~~--~~~~~e~~~---~------~~r~w~p~rsklaa~i~~g-~~l~lkpg~~VLDlGcG~G 68 (209)
T d1nt2a_ 4 MRNVYLL---DDTLVTKSKY--GSHYGEKVF---D------GYREWVPWRSKLAAMILKG-HRLKLRGDERVLYLGAASG 68 (209)
T ss_dssp ETTEEEE---TTEEEEECSC--CCSSSCCEE---T------TEEECCGGGCHHHHHHHTS-CCCCCCSSCEEEEETCTTS
T ss_pred hcCeEEe---ccEeEEecCC--cccCCceec---c------ceeeeCCcchHHHHHHhcc-ccCCCCCCCEEEEeCCcCC
Confidence 4677876 3678898876 457988763 2 6999999999999999876 5678999999999999999
Q ss_pred ccHHHHHhhhCCCcEEEEEeCChHHHHHHHHHHHcCCCeEEEEccCCCCcccccCCCcEeEEEEeCCChhHHHHHHHHHh
Q 021911 156 TTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKRTNVIPIIEDARHPAKYRMLVGMVDVIFSDVAQPDQARILALNAS 235 (305)
Q Consensus 156 ~~t~~la~~~~~~~~V~avD~s~~~~~~l~~~a~~~~nI~~~~~D~~~~~~~~~~~~~fD~V~~d~~~~~~~~~l~~~a~ 235 (305)
+++.++|+++ +.++|||||+|+.+++.+.+.+++++|+.+++.|+..+..+......+|+|+++.+++.+.+.+..++.
T Consensus 69 ~~~~~la~~v-~~g~V~gvDis~~~i~~a~~~a~~~~ni~~i~~d~~~~~~~~~~~~~vd~v~~~~~~~~~~~~~l~~~~ 147 (209)
T d1nt2a_ 69 TTVSHLADIV-DEGIIYAVEYSAKPFEKLLELVRERNNIIPLLFDASKPWKYSGIVEKVDLIYQDIAQKNQIEILKANAE 147 (209)
T ss_dssp HHHHHHHHHT-TTSEEEEECCCHHHHHHHHHHHHHCSSEEEECSCTTCGGGTTTTCCCEEEEEECCCSTTHHHHHHHHHH
T ss_pred HHHHHHHHhc-cCCeEEEEeCCHHHHHHHHHHhhccCCceEEEeeccCccccccccceEEEEEecccChhhHHHHHHHHH
Confidence 9999999998 567999999999999999999988899999999999987776667799999999998888877777999
Q ss_pred ccCCCCcEEEEEEcccccCCCCchhhhHHHHHHHHHHCCCcEeEEeecCCCCCceEEEEEE
Q 021911 236 YFLKAGGHFVISIKANCIDSTVPAEAVFQSEVKKLQQDQFKPFEQVTLEPFERDHACVVGG 296 (305)
Q Consensus 236 ~~LkpGG~lv~s~~~~~i~~~~~~~~v~~~~~~~l~~~Gf~~~e~~~l~p~~~~~~~vv~~ 296 (305)
++|||||+++++++..|++.+.++..++..+...++ .+|+++|+++++||+++|++|.+.
T Consensus 148 ~~LkpgG~l~i~~~~~~~d~~~~~~~~~~~~~~~l~-~gf~i~E~i~L~P~~~~H~~v~~~ 207 (209)
T d1nt2a_ 148 FFLKEKGEVVIMVKARSIDSTAEPEEVFKSVLKEME-GDFKIVKHGSLMPYHRDHIFIHAY 207 (209)
T ss_dssp HHEEEEEEEEEEEEHHHHCTTSCHHHHHHHHHHHHH-TTSEEEEEEECTTTCTTEEEEEEE
T ss_pred HHhccCCeEEEEEEccccCCCCCHHHHHHHHHHHHH-cCCEEEEEEccCCCccCcEEEEEE
Confidence 999999999999998999999888888888877775 789999999999999999986554
|
| >d1ixka_ c.66.1.38 (A:) Hypothetical methyltransferase PH1374 {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: NOL1/NOP2/sun domain: Hypothetical methyltransferase PH1374 species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=99.85 E-value=1.7e-21 Score=176.67 Aligned_cols=179 Identities=21% Similarity=0.230 Sum_probs=141.6
Q ss_pred ecccccCceEEEeC--Cccee-eec--cccCCccccCcceeEeecCCCceeeeeecCchhhHHHHHHHccccccCCCCCC
Q 021911 71 VEPHRHEGVFIAKG--KEDAL-VTK--NLVAGEAVYNEKRISVQNEDGTKVEYRIWNPFRSKLAAAVLGGVDNIWIKPGA 145 (305)
Q Consensus 71 ~~~~~~~gv~~~~~--~~~~l-~t~--~~~~~~~~y~e~~~~~~d~~~~~~~~~~~~~~~s~l~a~ll~~l~~~~~~~g~ 145 (305)
++.++.+|+-+.+. .++.+ +.. ..+.....|.++.+++||. .|++++.+| .+++++
T Consensus 58 ~~~L~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~G~~~vQD~-------------aS~l~~~~l------~~~~g~ 118 (313)
T d1ixka_ 58 VKRLNKKGFQFKRVPWAKEGFCLTREPFSITSTPEFLTGLIYIQEA-------------SSMYPPVAL------DPKPGE 118 (313)
T ss_dssp HHHHHHTTCEEEEETTEEEEEEEEECSSCGGGSHHHHTTSEEECCH-------------HHHHHHHHH------CCCTTC
T ss_pred HHHHHhCCCceEECCCCcchhhhccCCCccccCHhhhhceEEEecc-------------cccchhhcc------cCCccc
Confidence 44556667666554 24444 332 2356678899999999998 999999998 689999
Q ss_pred EEEEEecCCCccHHHHHhhhCCCcEEEEEeCChHHHHHHHHHHHcC--CCeEEEEccCCCCcccccCCCcEeEEEEeCCC
Q 021911 146 RVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKR--TNVIPIIEDARHPAKYRMLVGMVDVIFSDVAQ 223 (305)
Q Consensus 146 ~VLDlG~G~G~~t~~la~~~~~~~~V~avD~s~~~~~~l~~~a~~~--~nI~~~~~D~~~~~~~~~~~~~fD~V~~d~~~ 223 (305)
+|||+|||+|++|+++++.+...+.|+|+|+++.++..+.+.+++. .||..+..|....... ...||.|++|+||
T Consensus 119 ~vlD~CAapGgKt~~l~~~~~~~~~i~a~d~~~~r~~~l~~~~~r~~~~~i~~~~~d~~~~~~~---~~~fD~ILvDaPC 195 (313)
T d1ixka_ 119 IVADMAAAPGGKTSYLAQLMRNDGVIYAFDVDENRLRETRLNLSRLGVLNVILFHSSSLHIGEL---NVEFDKILLDAPC 195 (313)
T ss_dssp EEEECCSSCSHHHHHHHHHTTTCSEEEEECSCHHHHHHHHHHHHHHTCCSEEEESSCGGGGGGG---CCCEEEEEEECCT
T ss_pred eeeecccchhhhhHhhhhhcccccceeeeccCHHHHHHHHHHHHHHHhhccccccccccccccc---cccccEEEEcccc
Confidence 9999999999999999999988899999999998888887776654 6888888887766433 5789999999995
Q ss_pred h-------------------------hHHHHHHHHHhccCCCCcEEEEEEcccccCCCCchhhhHHHHHHHHHHCCCcEe
Q 021911 224 P-------------------------DQARILALNASYFLKAGGHFVISIKANCIDSTVPAEAVFQSEVKKLQQDQFKPF 278 (305)
Q Consensus 224 ~-------------------------~~~~~l~~~a~~~LkpGG~lv~s~~~~~i~~~~~~~~v~~~~~~~l~~~Gf~~~ 278 (305)
. .|.+++. ++.++|||||+||||| |++...+|+.++- ..|++..|+++
T Consensus 196 Sg~G~~~r~p~~~~~~~~~~~~~l~~~Q~~iL~-~a~~~lk~gG~lVYsT--CSl~~eENE~VV~----~~L~~~~~~~~ 268 (313)
T d1ixka_ 196 TGSGTIHKNPERKWNRTMDDIKFCQGLQMRLLE-KGLEVLKPGGILVYST--CSLEPEENEFVIQ----WALDNFDVELL 268 (313)
T ss_dssp TSTTTCC--------CCHHHHHHHHHHHHHHHH-HHHHHEEEEEEEEEEE--SCCCGGGTHHHHH----HHHHHSSEEEE
T ss_pred ccCCceeeccchhhhhhhhHHHHHHHHHHHHHH-hhhheeCCCcEEEEee--ccCChHhHHHHHH----HHHhcCCCEEe
Confidence 2 4888888 9999999999999999 8888888887762 23344555544
|
| >d1sqga2 c.66.1.38 (A:145-428) Ribosomal RNA small subunit methyltransferase B, RsmB (Sun, Fmu/Fmv), C-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: NOL1/NOP2/sun domain: Ribosomal RNA small subunit methyltransferase B, RsmB (Sun, Fmu/Fmv), C-terminal domain species: Escherichia coli [TaxId: 562]
Probab=99.85 E-value=1.1e-20 Score=169.04 Aligned_cols=157 Identities=19% Similarity=0.188 Sum_probs=124.6
Q ss_pred ccCCccccCcceeEeecCCCceeeeeecCchhhHHHHHHHccccccCCCCCCEEEEEecCCCccHHHHHhhhCCCcEEEE
Q 021911 94 LVAGEAVYNEKRISVQNEDGTKVEYRIWNPFRSKLAAAVLGGVDNIWIKPGARVLYLGAASGTTVSHVSDIVGPNGVVYA 173 (305)
Q Consensus 94 ~~~~~~~y~e~~~~~~d~~~~~~~~~~~~~~~s~l~a~ll~~l~~~~~~~g~~VLDlG~G~G~~t~~la~~~~~~~~V~a 173 (305)
.+.....|.++.+++||. .|++++.+| .++++.+|||+|||+|++|+++|+.. ..+.|+|
T Consensus 72 ~l~~~~~~~~G~~~vQD~-------------sS~l~~~~L------~~~~g~~vLD~CAaPGgKt~~la~l~-~~~~i~a 131 (284)
T d1sqga2 72 PVHALPGFEDGWVTVQDA-------------SAQGCMTWL------APQNGEHILDLCAAPGGKTTHILEVA-PEAQVVA 131 (284)
T ss_dssp CGGGSTTGGGTSEEECCH-------------HHHTHHHHH------CCCTTCEEEEESCTTCHHHHHHHHHC-TTCEEEE
T ss_pred chhhChhhhccEEEeccc-------------ccccccccc------CccccceeEeccCccccchhhhhhhh-hhhhhhh
Confidence 345668899999999998 999999998 68999999999999999999999975 4689999
Q ss_pred EeCChHHHHHHHHHHHcC--CCeEEEEccCCCCcccccCCCcEeEEEEeCCCh-------------------------hH
Q 021911 174 VEFSHRSGRDLVNMAKKR--TNVIPIIEDARHPAKYRMLVGMVDVIFSDVAQP-------------------------DQ 226 (305)
Q Consensus 174 vD~s~~~~~~l~~~a~~~--~nI~~~~~D~~~~~~~~~~~~~fD~V~~d~~~~-------------------------~~ 226 (305)
+|+++.+++.+.+.++.. .++.....|....... ....||.|++|+||. .|
T Consensus 132 ~d~~~~R~~~l~~~~~r~g~~~~~~~~~~~~~~~~~--~~~~fd~IL~DaPCSg~G~~rr~p~~~~~~~~~~~~~l~~lQ 209 (284)
T d1sqga2 132 VDIDEQRLSRVYDNLKRLGMKATVKQGDGRYPSQWC--GEQQFDRILLDAPCSATGVIRRHPDIKWLRRDRDIPELAQLQ 209 (284)
T ss_dssp EESSTTTHHHHHHHHHHTTCCCEEEECCTTCTHHHH--TTCCEEEEEEECCCCCGGGTTTCTTHHHHCCTTHHHHHHHHH
T ss_pred hhcchhhhhhHhhhhhcccccceeeeccccccchhc--ccccccEEEEeccccccCccccccchhhccccchhhHHHHHH
Confidence 999999988888887765 4555554454433221 346899999999952 48
Q ss_pred HHHHHHHHhccCCCCcEEEEEEcccccCCCCchhhhHHHHHHHHHH-CCCcEeE
Q 021911 227 ARILALNASYFLKAGGHFVISIKANCIDSTVPAEAVFQSEVKKLQQ-DQFKPFE 279 (305)
Q Consensus 227 ~~~l~~~a~~~LkpGG~lv~s~~~~~i~~~~~~~~v~~~~~~~l~~-~Gf~~~e 279 (305)
.++|. +|.++|||||+|+||| |++...+|+.++ . ..|++ .+|++++
T Consensus 210 ~~iL~-~a~~~lk~gG~lvYsT--CS~~~~ENE~vv-~---~~l~~~~~~~~~~ 256 (284)
T d1sqga2 210 SEILD-AIWPHLKTGGTLVYAT--CSVLPEENSLQI-K---AFLQRTADAELCE 256 (284)
T ss_dssp HHHHH-HHGGGEEEEEEEEEEE--SCCCGGGTHHHH-H---HHHHHCTTCEECS
T ss_pred HHHHH-HHHHhcCCCceEEEee--ecCchhhCHHHH-H---HHHHhCCCcEEec
Confidence 88998 9999999999999999 888888887765 2 22332 4566554
|
| >d2b9ea1 c.66.1.38 (A:133-425) NOL1R {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: NOL1/NOP2/sun domain: NOL1R species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.84 E-value=2.1e-20 Score=168.04 Aligned_cols=145 Identities=19% Similarity=0.207 Sum_probs=122.2
Q ss_pred cCCccccCcceeEeecCCCceeeeeecCchhhHHHHHHHccccccCCCCCCEEEEEecCCCccHHHHHhhhCCCcEEEEE
Q 021911 95 VAGEAVYNEKRISVQNEDGTKVEYRIWNPFRSKLAAAVLGGVDNIWIKPGARVLYLGAASGTTVSHVSDIVGPNGVVYAV 174 (305)
Q Consensus 95 ~~~~~~y~e~~~~~~d~~~~~~~~~~~~~~~s~l~a~ll~~l~~~~~~~g~~VLDlG~G~G~~t~~la~~~~~~~~V~av 174 (305)
+...+.|.++.+++||. .|++++.++ .+.++++|||+|||+|++|.++|+.+.+.+.|+|+
T Consensus 65 l~~~~~~~~G~~~~QD~-------------sS~l~~~~L------~~~~g~~vLD~cAapGgKt~~la~l~~~~~~i~a~ 125 (293)
T d2b9ea1 65 LHEHPLYRAGHLILQDR-------------ASCLPAMLL------DPPPGSHVIDACAAPGNKTSHLAALLKNQGKIFAF 125 (293)
T ss_dssp CTTSHHHHTTSEEECCT-------------GGGHHHHHH------CCCTTCEEEESSCTTCHHHHHHHHHHTTCSEEEEE
T ss_pred cccChHHhCcEEEEcCC-------------ccccccccc------CCCccceEEecccchhhHHHHHHHHhcCCceEeee
Confidence 45567899999999998 999999998 68999999999999999999999999888999999
Q ss_pred eCChHHHHHHHHHHHcC--CCeEEEEccCCCCcccccCCCcEeEEEEeCCCh---------------------------h
Q 021911 175 EFSHRSGRDLVNMAKKR--TNVIPIIEDARHPAKYRMLVGMVDVIFSDVAQP---------------------------D 225 (305)
Q Consensus 175 D~s~~~~~~l~~~a~~~--~nI~~~~~D~~~~~~~~~~~~~fD~V~~d~~~~---------------------------~ 225 (305)
|++++++..+.+++++. .|+.+...|+............||.|++|+||. .
T Consensus 126 d~~~~R~~~l~~~l~r~g~~~~~~~~~d~~~~~~~~~~~~~fD~VL~DaPCSg~G~~~r~p~~~~~~~~~~~~~~~l~~~ 205 (293)
T d2b9ea1 126 DLDAKRLASMATLLARAGVSCCELAEEDFLAVSPSDPRYHEVHYILLDPSCSGSGMPSRQLEEPGAGTPSPVRLHALAGF 205 (293)
T ss_dssp ESCHHHHHHHHHHHHHTTCCSEEEEECCGGGSCTTCGGGTTEEEEEECCCCCC------------------CCHHHHHHH
T ss_pred cCCHHHHHHHHHHHHhcCccceeeeehhhhhhcccccccceeeEEeecCcccchhhhcccchhhccCCcchhhHHHHhhh
Confidence 99999888888887765 789999999876654322346899999999942 3
Q ss_pred HHHHHHHHHhccCCCCcEEEEEEcccccCCCCchhhh
Q 021911 226 QARILALNASYFLKAGGHFVISIKANCIDSTVPAEAV 262 (305)
Q Consensus 226 ~~~~l~~~a~~~LkpGG~lv~s~~~~~i~~~~~~~~v 262 (305)
|.+++. +|. .|||+|+|+|+| |++...+|+.++
T Consensus 206 Q~~il~-~a~-~l~~gG~lvYsT--CSl~~~ENe~vV 238 (293)
T d2b9ea1 206 QQRALC-HAL-TFPSLQRLVYST--CSLCQEENEDVV 238 (293)
T ss_dssp HHHHHH-HHT-TCTTCCEEEEEE--SCCCGGGTHHHH
T ss_pred hHHhHH-Hhh-hcccccEEEEee--ccCChhHhHHHH
Confidence 666665 677 479999999999 888888887765
|
| >d1yb2a1 c.66.1.13 (A:6-255) Hypothetical protein Ta0852 {Thermoplasma acidophilum [TaxId: 2303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: tRNA(1-methyladenosine) methyltransferase-like domain: Hypothetical protein Ta0852 species: Thermoplasma acidophilum [TaxId: 2303]
Probab=99.73 E-value=1.7e-17 Score=145.27 Aligned_cols=130 Identities=18% Similarity=0.214 Sum_probs=102.5
Q ss_pred cccCCCCCCEEEEEecCCCccHHHHHhhhCCCcEEEEEeCChHHHHHHHHHHHcC---CCeEEEEccCCCCcccccCCCc
Q 021911 137 DNIWIKPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKR---TNVIPIIEDARHPAKYRMLVGM 213 (305)
Q Consensus 137 ~~~~~~~g~~VLDlG~G~G~~t~~la~~~~~~~~V~avD~s~~~~~~l~~~a~~~---~nI~~~~~D~~~~~~~~~~~~~ 213 (305)
..++++|+++|||+|||+|.++..||+.+++.++|+++|+++.+++.+.++.++. .||++++.|+.+.. ....
T Consensus 79 ~~l~i~pG~rVLEiG~GsG~lt~~la~~v~~~g~V~~vD~~e~~~~~A~~n~~~~~~~~nv~~~~~Di~~~~----~~~~ 154 (250)
T d1yb2a1 79 MRCGLRPGMDILEVGVGSGNMSSYILYALNGKGTLTVVERDEDNLKKAMDNLSEFYDIGNVRTSRSDIADFI----SDQM 154 (250)
T ss_dssp --CCCCTTCEEEEECCTTSHHHHHHHHHHTTSSEEEEECSCHHHHHHHHHHHHTTSCCTTEEEECSCTTTCC----CSCC
T ss_pred HHcCCCCcCEEEEeeeeCcHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHhcCCCceEEEEeeeeccc----ccce
Confidence 3447999999999999999999999999999999999999997766666665543 68999999997753 2468
Q ss_pred EeEEEEeCCChhHHHHHHHHHhccCCCCcEEEEEEcccccCCCCchhhhHHHHHHHHHHCCCcEeEEee
Q 021911 214 VDVIFSDVAQPDQARILALNASYFLKAGGHFVISIKANCIDSTVPAEAVFQSEVKKLQQDQFKPFEQVT 282 (305)
Q Consensus 214 fD~V~~d~~~~~~~~~l~~~a~~~LkpGG~lv~s~~~~~i~~~~~~~~v~~~~~~~l~~~Gf~~~e~~~ 282 (305)
||+|++|++.|+ +.+. ++.++|||||+|++..+ |+ ++ ..+.++.|++.||..++.++
T Consensus 155 fD~V~ld~p~p~--~~l~-~~~~~LKpGG~lv~~~P--~i------~Q-v~~~~~~l~~~gf~~i~~~E 211 (250)
T d1yb2a1 155 YDAVIADIPDPW--NHVQ-KIASMMKPGSVATFYLP--NF------DQ-SEKTVLSLSASGMHHLETVE 211 (250)
T ss_dssp EEEEEECCSCGG--GSHH-HHHHTEEEEEEEEEEES--SH------HH-HHHHHHHSGGGTEEEEEEEE
T ss_pred eeeeeecCCchH--HHHH-HHHHhcCCCceEEEEeC--Cc------Ch-HHHHHHHHHHCCCceeEEEE
Confidence 999999998876 4465 89999999999998872 21 11 23446777888998766543
|
| >d1nkva_ c.66.1.21 (A:) Hypothetical Protein YjhP {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Hypothetical Protein YjhP domain: Hypothetical Protein YjhP species: Escherichia coli [TaxId: 562]
Probab=99.70 E-value=9.7e-17 Score=139.68 Aligned_cols=157 Identities=22% Similarity=0.117 Sum_probs=111.6
Q ss_pred eeeecCchhhHHHHHHHccccccCCCCCCEEEEEecCCCccHHHHHhhhCCCcEEEEEeCChHHHHHHHHHHHcC---CC
Q 021911 117 EYRIWNPFRSKLAAAVLGGVDNIWIKPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKR---TN 193 (305)
Q Consensus 117 ~~~~~~~~~s~l~a~ll~~l~~~~~~~g~~VLDlG~G~G~~t~~la~~~~~~~~V~avD~s~~~~~~l~~~a~~~---~n 193 (305)
+++..+|+.......++..+ .+.|+++|||||||+|..+..+++.. .++|++||+|+.++....+.+.+. ++
T Consensus 10 ~h~~~~p~~~~~~~~l~~~~---~l~pg~~VLDiGCG~G~~~~~la~~~--~~~v~GvD~s~~~~~~ar~~~~~~gl~~~ 84 (245)
T d1nkva_ 10 EHRIHNPFTEEKYATLGRVL---RMKPGTRILDLGSGSGEMLCTWARDH--GITGTGIDMSSLFTAQAKRRAEELGVSER 84 (245)
T ss_dssp SCSSSSSCCHHHHHHHHHHT---CCCTTCEEEEETCTTCHHHHHHHHHT--CCEEEEEESCHHHHHHHHHHHHHTTCTTT
T ss_pred hccccCCCCHHHHHHHHHHc---CCCCCCEEEEEcCCCCHHHHHHHHhc--CCEEEEEecccchhhHHHHHHHHhhcccc
Confidence 44555666666555555433 68999999999999999999999874 368999999996665555555444 46
Q ss_pred eEEEEccCCCCcccccCCCcEeEEEEeCC---ChhHHHHHHHHHhccCCCCcEEEEEEcccccCC-----------CCc-
Q 021911 194 VIPIIEDARHPAKYRMLVGMVDVIFSDVA---QPDQARILALNASYFLKAGGHFVISIKANCIDS-----------TVP- 258 (305)
Q Consensus 194 I~~~~~D~~~~~~~~~~~~~fD~V~~d~~---~~~~~~~l~~~a~~~LkpGG~lv~s~~~~~i~~-----------~~~- 258 (305)
|++++.|+.+.. ...+||+|++... .++...++. +++++|||||+|++......... ...
T Consensus 85 v~~~~~d~~~~~----~~~~fD~v~~~~~~~~~~d~~~~l~-~~~r~LkPGG~l~i~~~~~~~~~~~~~~~~~~~~~~~~ 159 (245)
T d1nkva_ 85 VHFIHNDAAGYV----ANEKCDVAACVGATWIAGGFAGAEE-LLAQSLKPGGIMLIGEPYWRQLPATEEIAQACGVSSTS 159 (245)
T ss_dssp EEEEESCCTTCC----CSSCEEEEEEESCGGGTSSSHHHHH-HHTTSEEEEEEEEEEEEEETTCCSSHHHHHTTTCSCGG
T ss_pred chhhhhHHhhcc----ccCceeEEEEEehhhccCCHHHHHH-HHHHHcCcCcEEEEEeccccCCCChHHHHHHhccCCCc
Confidence 999999998763 2578999998655 456677787 99999999999999863211000 001
Q ss_pred hhhhHHHHHHHHHHCCCcEeEEeec
Q 021911 259 AEAVFQSEVKKLQQDQFKPFEQVTL 283 (305)
Q Consensus 259 ~~~v~~~~~~~l~~~Gf~~~e~~~l 283 (305)
....+......+++.||++++....
T Consensus 160 ~~~~~~~~~~~~~~aG~~~v~~~~~ 184 (245)
T d1nkva_ 160 DFLTLPGLVGAFDDLGYDVVEMVLA 184 (245)
T ss_dssp GSCCHHHHHHHHHTTTBCCCEEEEC
T ss_pred ccCCHHHHHHHHHHcCCEEEEEEeC
Confidence 1112344467778999998876544
|
| >d1i9ga_ c.66.1.13 (A:) Probable methyltransferase Rv2118c {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: tRNA(1-methyladenosine) methyltransferase-like domain: Probable methyltransferase Rv2118c species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=99.70 E-value=7.8e-17 Score=141.93 Aligned_cols=137 Identities=26% Similarity=0.285 Sum_probs=102.1
Q ss_pred HHHHHHHccccccCCCCCCEEEEEecCCCccHHHHHhhhCCCcEEEEEeCChHHHHHHHHHHHc-----CCCeEEEEccC
Q 021911 127 KLAAAVLGGVDNIWIKPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKK-----RTNVIPIIEDA 201 (305)
Q Consensus 127 ~l~a~ll~~l~~~~~~~g~~VLDlG~G~G~~t~~la~~~~~~~~V~avD~s~~~~~~l~~~a~~-----~~nI~~~~~D~ 201 (305)
+-++.++.. ++++|+++|||+|||+|.++.+||+.+++.++|+++|+++.+++.+.++.+. ..|+.+++.|+
T Consensus 83 kD~s~Ii~~---l~i~PG~~VLE~G~GsG~lt~~La~~vgp~G~V~~~d~~~~~~~~Ar~n~~~~~~~~~~nv~~~~~d~ 159 (264)
T d1i9ga_ 83 KDAAQIVHE---GDIFPGARVLEAGAGSGALTLSLLRAVGPAGQVISYEQRADHAEHARRNVSGCYGQPPDNWRLVVSDL 159 (264)
T ss_dssp HHHHHHHHH---TTCCTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHHHTSCCTTEEEECSCG
T ss_pred HHHHHHHHH---hCCCCCCEEEecCcCCcHHHHHHHHhhCCCcEEEEecCCHHHHHHHHHhhhhhccCCCceEEEEeccc
Confidence 344444433 3699999999999999999999999999999999999999666655554432 16999999998
Q ss_pred CCCcccccCCCcEeEEEEeCCChhHHHHHHHHHhccCCCCcEEEEEEcccccCCCCchhhhHHHHHHHHH-HCCCcEeEE
Q 021911 202 RHPAKYRMLVGMVDVIFSDVAQPDQARILALNASYFLKAGGHFVISIKANCIDSTVPAEAVFQSEVKKLQ-QDQFKPFEQ 280 (305)
Q Consensus 202 ~~~~~~~~~~~~fD~V~~d~~~~~~~~~l~~~a~~~LkpGG~lv~s~~~~~i~~~~~~~~v~~~~~~~l~-~~Gf~~~e~ 280 (305)
.+.. +....||+|++|+|.|+ +.+. ++.++|||||+|++.+ .|+ +. ..+.++.|+ +.+|..+++
T Consensus 160 ~~~~---~~~~~fDaV~ldlp~P~--~~l~-~~~~~LkpGG~lv~~~--P~i------~Q-v~~~~~~l~~~~~f~~i~~ 224 (264)
T d1i9ga_ 160 ADSE---LPDGSVDRAVLDMLAPW--EVLD-AVSRLLVAGGVLMVYV--ATV------TQ-LSRIVEALRAKQCWTEPRA 224 (264)
T ss_dssp GGCC---CCTTCEEEEEEESSCGG--GGHH-HHHHHEEEEEEEEEEE--SSH------HH-HHHHHHHHHHHSSBCCCEE
T ss_pred cccc---ccCCCcceEEEecCCHH--HHHH-HHHhccCCCCEEEEEe--Ccc------Ch-HHHHHHHHHHcCCeecceE
Confidence 7643 23579999999999886 4465 8999999999999887 231 11 233455664 556765444
Q ss_pred e
Q 021911 281 V 281 (305)
Q Consensus 281 ~ 281 (305)
+
T Consensus 225 ~ 225 (264)
T d1i9ga_ 225 W 225 (264)
T ss_dssp E
T ss_pred E
Confidence 3
|
| >d1vl5a_ c.66.1.41 (A:) Hypothetical protein BH2331 {Bacillus halodurans [TaxId: 86665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: UbiE/COQ5-like domain: Hypothetical protein BH2331 species: Bacillus halodurans [TaxId: 86665]
Probab=99.69 E-value=1e-16 Score=137.54 Aligned_cols=102 Identities=18% Similarity=0.204 Sum_probs=83.7
Q ss_pred CCCCCCEEEEEecCCCccHHHHHhhhCCCcEEEEEeCChHHHHHHHHHHHcC--CCeEEEEccCCCCcccccCCCcEeEE
Q 021911 140 WIKPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKR--TNVIPIIEDARHPAKYRMLVGMVDVI 217 (305)
Q Consensus 140 ~~~~g~~VLDlG~G~G~~t~~la~~~~~~~~V~avD~s~~~~~~l~~~a~~~--~nI~~~~~D~~~~~~~~~~~~~fD~V 217 (305)
.++++++|||||||+|.++.++++.. .+|+++|+|+.+++.+.+.++.. +||.+++.|+.+.+. ..++||+|
T Consensus 12 ~l~~~~rVLDiGcG~G~~~~~l~~~~---~~v~gvD~s~~~i~~A~~~~~~~~~~~i~~~~~d~~~l~~---~~~~fD~v 85 (231)
T d1vl5a_ 12 ALKGNEEVLDVATGGGHVANAFAPFV---KKVVAFDLTEDILKVARAFIEGNGHQQVEYVQGDAEQMPF---TDERFHIV 85 (231)
T ss_dssp TCCSCCEEEEETCTTCHHHHHHGGGS---SEEEEEESCHHHHHHHHHHHHHTTCCSEEEEECCC-CCCS---CTTCEEEE
T ss_pred CCCCcCEEEEecccCcHHHHHHHHhC---CEEEEEECCHHHHhhhhhcccccccccccccccccccccc---cccccccc
Confidence 68999999999999999999999874 48999999996655554444433 789999999988652 35799999
Q ss_pred EEeCC---ChhHHHHHHHHHhccCCCCcEEEEEE
Q 021911 218 FSDVA---QPDQARILALNASYFLKAGGHFVISI 248 (305)
Q Consensus 218 ~~d~~---~~~~~~~l~~~a~~~LkpGG~lv~s~ 248 (305)
++... .++...++. ++.++|||||+|++.+
T Consensus 86 ~~~~~l~~~~d~~~~l~-~~~r~LkpgG~l~i~~ 118 (231)
T d1vl5a_ 86 TCRIAAHHFPNPASFVS-EAYRVLKKGGQLLLVD 118 (231)
T ss_dssp EEESCGGGCSCHHHHHH-HHHHHEEEEEEEEEEE
T ss_pred cccccccccCCHHHHHH-HHHHhcCCCcEEEEEe
Confidence 99766 457778887 9999999999999976
|
| >d1o54a_ c.66.1.13 (A:) Hypothetical protein TM0748 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: tRNA(1-methyladenosine) methyltransferase-like domain: Hypothetical protein TM0748 species: Thermotoga maritima [TaxId: 2336]
Probab=99.68 E-value=3.5e-16 Score=138.12 Aligned_cols=156 Identities=24% Similarity=0.247 Sum_probs=113.5
Q ss_pred HHHHHHHccccccCCCCCCEEEEEecCCCccHHHHHhhhCCCcEEEEEeCChHHHHHHHHHHHcC---CCeEEEEccCCC
Q 021911 127 KLAAAVLGGVDNIWIKPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKR---TNVIPIIEDARH 203 (305)
Q Consensus 127 ~l~a~ll~~l~~~~~~~g~~VLDlG~G~G~~t~~la~~~~~~~~V~avD~s~~~~~~l~~~a~~~---~nI~~~~~D~~~ 203 (305)
+.++.++..| +++|+++|||+|||+|.++.+||+.+++.++|+++|+++.+++.+.++++.. .++.+...|+..
T Consensus 90 kd~~~Ii~~l---~i~pG~~VLDiG~GsG~lt~~lA~~~~~~G~V~~vD~~~~~~~~A~~~~~~~g~~~~v~~~~~d~~~ 166 (266)
T d1o54a_ 90 KDSSFIAMML---DVKEGDRIIDTGVGSGAMCAVLARAVGSSGKVFAYEKREEFAKLAESNLTKWGLIERVTIKVRDISE 166 (266)
T ss_dssp HHHHHHHHHT---TCCTTCEEEEECCTTSHHHHHHHHHTTTTCEEEEECCCHHHHHHHHHHHHHTTCGGGEEEECCCGGG
T ss_pred HHHHHHHHhh---CCCCCCEEEECCCCCCHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhccccCcEEEeccccc
Confidence 4444454333 6999999999999999999999999999999999999997766666655543 567777777644
Q ss_pred CcccccCCCcEeEEEEeCCChhHHHHHHHHHhccCCCCcEEEEEEcccccCCCCchhhhHHHHHHHHHHCCCcEeEEeec
Q 021911 204 PAKYRMLVGMVDVIFSDVAQPDQARILALNASYFLKAGGHFVISIKANCIDSTVPAEAVFQSEVKKLQQDQFKPFEQVTL 283 (305)
Q Consensus 204 ~~~~~~~~~~fD~V~~d~~~~~~~~~l~~~a~~~LkpGG~lv~s~~~~~i~~~~~~~~v~~~~~~~l~~~Gf~~~e~~~l 283 (305)
.. ....||.|+.|++.|++ ++. ++.++|||||+|++..+ |+ .-..+.++.|++.+|..++++++
T Consensus 167 ~~----~~~~~D~V~~d~p~p~~--~l~-~~~~~LKpGG~lv~~~P--~~-------~Qv~~~~~~l~~~gF~~i~~~E~ 230 (266)
T d1o54a_ 167 GF----DEKDVDALFLDVPDPWN--YID-KCWEALKGGGRFATVCP--TT-------NQVQETLKKLQELPFIRIEVWES 230 (266)
T ss_dssp CC----SCCSEEEEEECCSCGGG--THH-HHHHHEEEEEEEEEEES--SH-------HHHHHHHHHHHHSSEEEEEEECC
T ss_pred cc----cccceeeeEecCCCHHH--HHH-HHHhhcCCCCEEEEEeC--cc-------cHHHHHHHHHHHCCceeEEEEEE
Confidence 32 24689999999987764 465 89999999999998762 21 12244567888899987766542
Q ss_pred C------------CCCC--ce--EEEEEEEcCCC
Q 021911 284 E------------PFER--DH--ACVVGGYRMPK 301 (305)
Q Consensus 284 ~------------p~~~--~~--~~vv~~~~~~~ 301 (305)
- |..+ .| +++++++-..+
T Consensus 231 l~R~~~~~~~~vRP~~~~vgHTgfl~~ark~~~~ 264 (266)
T d1o54a_ 231 LFRPYKPVPERLRPVDRMVAHTAYMIFATKVCRR 264 (266)
T ss_dssp CCCCEECCTTSCEECSCCCCCSCEEEEEEECSCS
T ss_pred EEEEEEecCCccCCCCCCcchHHHHHHheecccC
Confidence 1 2222 44 77777776544
|
| >d1xxla_ c.66.1.41 (A:) Hypothetical protein YcgJ {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: UbiE/COQ5-like domain: Hypothetical protein YcgJ species: Bacillus subtilis [TaxId: 1423]
Probab=99.67 E-value=4.8e-16 Score=134.17 Aligned_cols=103 Identities=21% Similarity=0.201 Sum_probs=85.4
Q ss_pred CCCCCCEEEEEecCCCccHHHHHhhhCCCcEEEEEeCChHHHHHHHHHHHcC--CCeEEEEccCCCCcccccCCCcEeEE
Q 021911 140 WIKPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKR--TNVIPIIEDARHPAKYRMLVGMVDVI 217 (305)
Q Consensus 140 ~~~~g~~VLDlG~G~G~~t~~la~~~~~~~~V~avD~s~~~~~~l~~~a~~~--~nI~~~~~D~~~~~~~~~~~~~fD~V 217 (305)
.++|+.+|||||||+|.++.++++.. .+|++||+|+.+++.+.+.+.+. +|+.++++|+.+.+ +..++||+|
T Consensus 13 ~~~~~~rILDiGcGtG~~~~~la~~~---~~v~gvD~S~~~l~~A~~~~~~~~~~~~~~~~~d~~~~~---~~~~~fD~v 86 (234)
T d1xxla_ 13 ECRAEHRVLDIGAGAGHTALAFSPYV---QECIGVDATKEMVEVASSFAQEKGVENVRFQQGTAESLP---FPDDSFDII 86 (234)
T ss_dssp TCCTTCEEEEESCTTSHHHHHHGGGS---SEEEEEESCHHHHHHHHHHHHHHTCCSEEEEECBTTBCC---SCTTCEEEE
T ss_pred CCCCCCEEEEeCCcCcHHHHHHHHhC---CeEEEEeCChhhhhhhhhhhccccccccccccccccccc---cccccccee
Confidence 79999999999999999999999974 48999999996655555554443 68999999998764 236799999
Q ss_pred EEeCC---ChhHHHHHHHHHhccCCCCcEEEEEEc
Q 021911 218 FSDVA---QPDQARILALNASYFLKAGGHFVISIK 249 (305)
Q Consensus 218 ~~d~~---~~~~~~~l~~~a~~~LkpGG~lv~s~~ 249 (305)
+|... .++...++. ++.++|||||++++++.
T Consensus 87 ~~~~~l~~~~d~~~~l~-~~~r~LkpgG~~~~~~~ 120 (234)
T d1xxla_ 87 TCRYAAHHFSDVRKAVR-EVARVLKQDGRFLLVDH 120 (234)
T ss_dssp EEESCGGGCSCHHHHHH-HHHHHEEEEEEEEEEEE
T ss_pred eeeceeecccCHHHHHH-HHHHeeCCCcEEEEEEc
Confidence 99766 457788887 99999999999999763
|
| >d2b25a1 c.66.1.13 (A:6-329) Hypothetical protein FLJ20628 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: tRNA(1-methyladenosine) methyltransferase-like domain: Hypothetical protein FLJ20628 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.67 E-value=7e-16 Score=139.71 Aligned_cols=137 Identities=22% Similarity=0.183 Sum_probs=99.0
Q ss_pred CCCCCCEEEEEecCCCccHHHHHhhhCCCcEEEEEeCChHHHHHHHHHHHc-------------CCCeEEEEccCCCCcc
Q 021911 140 WIKPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKK-------------RTNVIPIIEDARHPAK 206 (305)
Q Consensus 140 ~~~~g~~VLDlG~G~G~~t~~la~~~~~~~~V~avD~s~~~~~~l~~~a~~-------------~~nI~~~~~D~~~~~~ 206 (305)
+++|+++|||+|||+|.++.+||+.+++.++|+++|+++.+++.+.++.++ ..||.+++.|+.....
T Consensus 95 ~i~pG~rVLE~GtGsG~lt~~LAr~vg~~G~V~t~E~~~~~~~~A~~n~~~~~~~~~~~~~~~~~~nv~~~~~di~~~~~ 174 (324)
T d2b25a1 95 DINPGDTVLEAGSGSGGMSLFLSKAVGSQGRVISFEVRKDHHDLAKKNYKHWRDSWKLSHVEEWPDNVDFIHKDISGATE 174 (324)
T ss_dssp TCCTTCEEEEECCTTSHHHHHHHHHHCTTCEEEEEESSHHHHHHHHHHHHHHHHHHTTTCSSCCCCCEEEEESCTTCCC-
T ss_pred CCCCCCEEEEecccccHHHHHHHHHhCCCcEEEEecCCHHHHHHHHHHHHHhhhhhhhhhhhccccceeEEecchhhccc
Confidence 799999999999999999999999999999999999999666555544432 1589999999976543
Q ss_pred cccCCCcEeEEEEeCCChhHHHHHHHHHhccCCCCcEEEEEEcccccCCCCchhhhHHHHHHHHHH--CCCcEeEEeecC
Q 021911 207 YRMLVGMVDVIFSDVAQPDQARILALNASYFLKAGGHFVISIKANCIDSTVPAEAVFQSEVKKLQQ--DQFKPFEQVTLE 284 (305)
Q Consensus 207 ~~~~~~~fD~V~~d~~~~~~~~~l~~~a~~~LkpGG~lv~s~~~~~i~~~~~~~~v~~~~~~~l~~--~Gf~~~e~~~l~ 284 (305)
. .....||.||+|+|.|+. .+. ++.++|||||+|++.+ .|+ +. ....++.|+. .+|..++++++
T Consensus 175 ~-~~~~~fD~V~LD~p~P~~--~l~-~~~~~LKpGG~lv~~~--P~i------~Q-v~~~~~~l~~~~~~f~~i~~~E~- 240 (324)
T d2b25a1 175 D-IKSLTFDAVALDMLNPHV--TLP-VFYPHLKHGGVCAVYV--VNI------TQ-VIELLDGIRTCELALSCEKISEV- 240 (324)
T ss_dssp -------EEEEEECSSSTTT--THH-HHGGGEEEEEEEEEEE--SSH------HH-HHHHHHHHHHHTCCEEEEEEECC-
T ss_pred c-cCCCCcceEeecCcCHHH--HHH-HHHHhccCCCEEEEEe--CCH------HH-HHHHHHHHHHcCCCceeeEEEEE-
Confidence 2 234689999999998764 465 8999999999999876 232 12 2344566654 45766665543
Q ss_pred CCCCceE
Q 021911 285 PFERDHA 291 (305)
Q Consensus 285 p~~~~~~ 291 (305)
..|.+-
T Consensus 241 -~~R~w~ 246 (324)
T d2b25a1 241 -IVRDWL 246 (324)
T ss_dssp -CCCCEE
T ss_pred -EeeeeE
Confidence 334444
|
| >d1l3ia_ c.66.1.22 (A:) Precorrin-6Y methyltransferase (CbiT) {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Precorrin-6Y methyltransferase (CbiT) domain: Precorrin-6Y methyltransferase (CbiT) species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]
Probab=99.66 E-value=3.8e-16 Score=130.60 Aligned_cols=102 Identities=17% Similarity=0.161 Sum_probs=86.8
Q ss_pred CCCCCCEEEEEecCCCccHHHHHhhhCCCcEEEEEeCChHHHHHHHHHHHcC---CCeEEEEccCCCCcccccCCCcEeE
Q 021911 140 WIKPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKR---TNVIPIIEDARHPAKYRMLVGMVDV 216 (305)
Q Consensus 140 ~~~~g~~VLDlG~G~G~~t~~la~~~~~~~~V~avD~s~~~~~~l~~~a~~~---~nI~~~~~D~~~~~~~~~~~~~fD~ 216 (305)
.++++++|||+|||+|.++.++|... .+|++||+|+.+++.+.+++++. +||++++.|+.+... ....||+
T Consensus 30 ~~~~g~~VLDiGcGsG~~s~~lA~~~---~~V~avD~~~~~l~~a~~n~~~~gl~~~v~~~~gda~~~~~---~~~~~D~ 103 (186)
T d1l3ia_ 30 EPGKNDVAVDVGCGTGGVTLELAGRV---RRVYAIDRNPEAISTTEMNLQRHGLGDNVTLMEGDAPEALC---KIPDIDI 103 (186)
T ss_dssp CCCTTCEEEEESCTTSHHHHHHHTTS---SEEEEEESCHHHHHHHHHHHHHTTCCTTEEEEESCHHHHHT---TSCCEEE
T ss_pred CCCCCCEEEEEECCeEcccccccccc---eEEEEecCCHHHHHHHHHHHHHcCCCcceEEEECchhhccc---ccCCcCE
Confidence 68999999999999999999998763 48999999997777777776655 699999999866542 2469999
Q ss_pred EEEeCCChhHHHHHHHHHhccCCCCcEEEEEE
Q 021911 217 IFSDVAQPDQARILALNASYFLKAGGHFVISI 248 (305)
Q Consensus 217 V~~d~~~~~~~~~l~~~a~~~LkpGG~lv~s~ 248 (305)
|+++.+.....+++. .+.++|||+|+|++..
T Consensus 104 v~~~~~~~~~~~~~~-~~~~~LkpgG~lvi~~ 134 (186)
T d1l3ia_ 104 AVVGGSGGELQEILR-IIKDKLKPGGRIIVTA 134 (186)
T ss_dssp EEESCCTTCHHHHHH-HHHHTEEEEEEEEEEE
T ss_pred EEEeCccccchHHHH-HHHHHhCcCCEEEEEe
Confidence 999998777778887 9999999999999875
|
| >d2o57a1 c.66.1.18 (A:16-297) Putative sarcosine dimethylglycine methyltransferase {Red algae (Galdieria sulphuraria) [TaxId: 130081]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Mycolic acid cyclopropane synthase domain: Putative sarcosine dimethylglycine methyltransferase species: Red algae (Galdieria sulphuraria) [TaxId: 130081]
Probab=99.63 E-value=2.8e-15 Score=133.04 Aligned_cols=138 Identities=13% Similarity=0.116 Sum_probs=99.4
Q ss_pred CCCCCCEEEEEecCCCccHHHHHhhhCCCcEEEEEeCChHHHHHHHHHHHcC---CCeEEEEccCCCCcccccCCCcEeE
Q 021911 140 WIKPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKR---TNVIPIIEDARHPAKYRMLVGMVDV 216 (305)
Q Consensus 140 ~~~~g~~VLDlG~G~G~~t~~la~~~~~~~~V~avD~s~~~~~~l~~~a~~~---~nI~~~~~D~~~~~~~~~~~~~fD~ 216 (305)
.++++.+|||||||+|.++..|++..+ .+|++||+|+.++..+.+.++.. .+|.++++|+.+.+. ..++||+
T Consensus 64 ~l~~~~~vLDiGcG~G~~~~~la~~~~--~~v~gvD~s~~~i~~a~~~~~~~gl~~~v~~~~~d~~~l~~---~~~sfD~ 138 (282)
T d2o57a1 64 VLQRQAKGLDLGAGYGGAARFLVRKFG--VSIDCLNIAPVQNKRNEEYNNQAGLADNITVKYGSFLEIPC---EDNSYDF 138 (282)
T ss_dssp CCCTTCEEEEETCTTSHHHHHHHHHHC--CEEEEEESCHHHHHHHHHHHHHHTCTTTEEEEECCTTSCSS---CTTCEEE
T ss_pred CCCCCCEEEEeCCCCcHHHhhhhccCC--cEEEEEeccchhhhhhhcccccccccccccccccccccccc---cccccch
Confidence 578899999999999999999998863 58999999996555444444332 589999999988642 3579999
Q ss_pred EEEeCC---ChhHHHHHHHHHhccCCCCcEEEEEEcccccCCCCch-hhh-----------HHHHHHHHHHCCCcEeEEe
Q 021911 217 IFSDVA---QPDQARILALNASYFLKAGGHFVISIKANCIDSTVPA-EAV-----------FQSEVKKLQQDQFKPFEQV 281 (305)
Q Consensus 217 V~~d~~---~~~~~~~l~~~a~~~LkpGG~lv~s~~~~~i~~~~~~-~~v-----------~~~~~~~l~~~Gf~~~e~~ 281 (305)
|++... .++...++. ++.++|||||+|+++............ ... .....+.++++||+.++..
T Consensus 139 V~~~~~l~h~~d~~~~l~-~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~l~~~Gf~~i~~~ 217 (282)
T d2o57a1 139 IWSQDAFLHSPDKLKVFQ-ECARVLKPRGVMAITDPMKEDGIDKSSIQPILDRIKLHDMGSLGLYRSLAKECGLVTLRTF 217 (282)
T ss_dssp EEEESCGGGCSCHHHHHH-HHHHHEEEEEEEEEEEEEECTTCCGGGGHHHHHHHTCSSCCCHHHHHHHHHHTTEEEEEEE
T ss_pred hhccchhhhccCHHHHHH-HHHHhcCCCcEEEEEEeecCCCCchhHHHHHHHHhccCCCCCHHHHHHHHHHcCCceEEEE
Confidence 998655 467777787 999999999999998632111111111 001 1122456688999888776
Q ss_pred ec
Q 021911 282 TL 283 (305)
Q Consensus 282 ~l 283 (305)
+.
T Consensus 218 d~ 219 (282)
T d2o57a1 218 SR 219 (282)
T ss_dssp EC
T ss_pred EC
Confidence 54
|
| >d1im8a_ c.66.1.14 (A:) Hypothetical protein HI0319 (YecO) {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Hypothetical protein HI0319 (YecO) domain: Hypothetical protein HI0319 (YecO) species: Haemophilus influenzae [TaxId: 727]
Probab=99.62 E-value=3.6e-15 Score=127.87 Aligned_cols=103 Identities=17% Similarity=0.221 Sum_probs=79.9
Q ss_pred CCCCCCEEEEEecCCCccHHHHHhhhC-CCcEEEEEeCChHHHHHHHHHHHcC---CCeEEEEccCCCCcccccCCCcEe
Q 021911 140 WIKPGARVLYLGAASGTTVSHVSDIVG-PNGVVYAVEFSHRSGRDLVNMAKKR---TNVIPIIEDARHPAKYRMLVGMVD 215 (305)
Q Consensus 140 ~~~~g~~VLDlG~G~G~~t~~la~~~~-~~~~V~avD~s~~~~~~l~~~a~~~---~nI~~~~~D~~~~~~~~~~~~~fD 215 (305)
+++|+.+|||||||+|..+..|++.+. +..+|++||+|+.+++.+.+.++.. .+++++..|+.+.+ ...+|
T Consensus 36 ~~~~~~~vLDlGCGtG~~~~~l~~~~~~~~~~v~giD~S~~ml~~A~~~~~~~~~~~~~~~~~~d~~~~~-----~~~~d 110 (225)
T d1im8a_ 36 FVTADSNVYDLGCSRGAATLSARRNINQPNVKIIGIDNSQPMVERCRQHIAAYHSEIPVEILCNDIRHVE-----IKNAS 110 (225)
T ss_dssp HCCTTCEEEEESCTTCHHHHHHHHTCCCSSCEEEEECSCHHHHHHHHHHHHTSCCSSCEEEECSCTTTCC-----CCSEE
T ss_pred hcCCCCEEEEeccchhhHHHHHHHhhcCCCCceEEeCCCHHHHHHHHHHhHhhcccchhhhccchhhccc-----cccce
Confidence 467899999999999999999998653 5679999999995555544444332 46777888876653 35789
Q ss_pred EEEEeCC-----ChhHHHHHHHHHhccCCCCcEEEEEE
Q 021911 216 VIFSDVA-----QPDQARILALNASYFLKAGGHFVISI 248 (305)
Q Consensus 216 ~V~~d~~-----~~~~~~~l~~~a~~~LkpGG~lv~s~ 248 (305)
+|++... .++...+|. +++++|||||.|++++
T Consensus 111 ~i~~~~~l~~~~~~d~~~~l~-~i~~~LkpgG~li~~~ 147 (225)
T d1im8a_ 111 MVILNFTLQFLPPEDRIALLT-KIYEGLNPNGVLVLSE 147 (225)
T ss_dssp EEEEESCGGGSCGGGHHHHHH-HHHHHEEEEEEEEEEE
T ss_pred eeEEeeeccccChhhHHHHHH-HHHHhCCCCceeeccc
Confidence 9988655 246667777 9999999999999986
|
| >d2nxca1 c.66.1.39 (A:1-254) PrmA-like protein TTHA0656 (TT0836) {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Ribosomal protein L11 methyltransferase PrmA domain: PrmA-like protein TTHA0656 (TT0836) species: Thermus thermophilus [TaxId: 274]
Probab=99.61 E-value=4.1e-15 Score=130.28 Aligned_cols=136 Identities=18% Similarity=0.224 Sum_probs=100.2
Q ss_pred CCCCCCEEEEEecCCCccHHHHHhhhCCCcEEEEEeCChHHHHHHHHHHHcC-CCeEEEEccCCCCcccccCCCcEeEEE
Q 021911 140 WIKPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKR-TNVIPIIEDARHPAKYRMLVGMVDVIF 218 (305)
Q Consensus 140 ~~~~g~~VLDlG~G~G~~t~~la~~~~~~~~V~avD~s~~~~~~l~~~a~~~-~nI~~~~~D~~~~~~~~~~~~~fD~V~ 218 (305)
..+++++|||+|||+|.++..+++. + .+|+|||+|+.+++.+.++++.+ -++.+++.|+.+.. ...+||+|+
T Consensus 117 ~~~~g~~VLDiGcGsG~l~i~aa~~-g--~~V~gvDis~~av~~A~~na~~n~~~~~~~~~d~~~~~----~~~~fD~V~ 189 (254)
T d2nxca1 117 HLRPGDKVLDLGTGSGVLAIAAEKL-G--GKALGVDIDPMVLPQAEANAKRNGVRPRFLEGSLEAAL----PFGPFDLLV 189 (254)
T ss_dssp HCCTTCEEEEETCTTSHHHHHHHHT-T--CEEEEEESCGGGHHHHHHHHHHTTCCCEEEESCHHHHG----GGCCEEEEE
T ss_pred hcCccCEEEEcccchhHHHHHHHhc-C--CEEEEEECChHHHHHHHHHHHHcCCceeEEeccccccc----cccccchhh
Confidence 4678999999999999999887765 3 58999999998888777777665 46778888875432 246899999
Q ss_pred EeCCChhHHHHHHHHHhccCCCCcEEEEEEcccccCCCCchhhhHHHHHHHHHHCCCcEeEEeecCCCCCceEEEEEE
Q 021911 219 SDVAQPDQARILALNASYFLKAGGHFVISIKANCIDSTVPAEAVFQSEVKKLQQDQFKPFEQVTLEPFERDHACVVGG 296 (305)
Q Consensus 219 ~d~~~~~~~~~l~~~a~~~LkpGG~lv~s~~~~~i~~~~~~~~v~~~~~~~l~~~Gf~~~e~~~l~p~~~~~~~vv~~ 296 (305)
++.......+++. .+.++|||||+|++|-.. . ... ....+.++++||++.+..... ++..++.+
T Consensus 190 ani~~~~l~~l~~-~~~~~LkpGG~lilSgil----~-~~~----~~v~~~~~~~Gf~~~~~~~~~----~Wv~l~~~ 253 (254)
T d2nxca1 190 ANLYAELHAALAP-RYREALVPGGRALLTGIL----K-DRA----PLVREAMAGAGFRPLEEAAEG----EWVLLAYG 253 (254)
T ss_dssp EECCHHHHHHHHH-HHHHHEEEEEEEEEEEEE----G-GGH----HHHHHHHHHTTCEEEEEEEET----TEEEEEEE
T ss_pred hccccccHHHHHH-HHHHhcCCCcEEEEEecc----h-hhH----HHHHHHHHHCCCEEEEEEEEC----CEEEEEEe
Confidence 9987666666666 899999999999998411 0 111 222456788999998876543 34444443
|
| >d2ex4a1 c.66.1.42 (A:2-224) Adrenal gland protein AD-003 (C9orf32) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: AD-003 protein-like domain: Adrenal gland protein AD-003 (C9orf32) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.58 E-value=5.5e-15 Score=126.52 Aligned_cols=144 Identities=11% Similarity=-0.040 Sum_probs=97.8
Q ss_pred CCCCCCEEEEEecCCCccHHHHHhhhCCCcEEEEEeCChHHHHHHHHHHHcC--CCeEEEEccCCCCcccccCCCcEeEE
Q 021911 140 WIKPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKR--TNVIPIIEDARHPAKYRMLVGMVDVI 217 (305)
Q Consensus 140 ~~~~g~~VLDlG~G~G~~t~~la~~~~~~~~V~avD~s~~~~~~l~~~a~~~--~nI~~~~~D~~~~~~~~~~~~~fD~V 217 (305)
...+..+|||||||+|.++..++... ..+|++||+|+.++..+.+.+... +++++++.|+++.+. ...+||+|
T Consensus 57 ~~~~~~~vLDiGcG~G~~~~~l~~~~--~~~v~~vD~s~~~l~~ak~~~~~~~~~~~~f~~~d~~~~~~---~~~~fD~I 131 (222)
T d2ex4a1 57 NKTGTSCALDCGAGIGRITKRLLLPL--FREVDMVDITEDFLVQAKTYLGEEGKRVRNYFCCGLQDFTP---EPDSYDVI 131 (222)
T ss_dssp -CCCCSEEEEETCTTTHHHHHTTTTT--CSEEEEEESCHHHHHHHHHHTGGGGGGEEEEEECCGGGCCC---CSSCEEEE
T ss_pred CCCCCCEEEEeccCCCHhhHHHHHhc--CCEEEEeecCHHHhhcccccccccccccccccccccccccc---cccccccc
Confidence 45567899999999999999987653 248999999995555554444433 578999999987653 35799999
Q ss_pred EEeCC---C--hhHHHHHHHHHhccCCCCcEEEEEEcccccC----CCCchhhhHHHH-HHHHHHCCCcEeEEeecCCCC
Q 021911 218 FSDVA---Q--PDQARILALNASYFLKAGGHFVISIKANCID----STVPAEAVFQSE-VKKLQQDQFKPFEQVTLEPFE 287 (305)
Q Consensus 218 ~~d~~---~--~~~~~~l~~~a~~~LkpGG~lv~s~~~~~i~----~~~~~~~v~~~~-~~~l~~~Gf~~~e~~~l~p~~ 287 (305)
++... . ++..+++. +++++|||+|.|+++....... ..........++ .+.++++||++++.....-+.
T Consensus 132 ~~~~~l~h~~~~~~~~~l~-~i~~~Lk~~G~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~aGf~ii~~~~q~~fP 210 (222)
T d2ex4a1 132 WIQWVIGHLTDQHLAEFLR-RCKGSLRPNGIIVIKDNMAQEGVILDDVDSSVCRDLDVVRRIICSAGLSLLAEERQENLP 210 (222)
T ss_dssp EEESCGGGSCHHHHHHHHH-HHHHHEEEEEEEEEEEEEBSSSEEEETTTTEEEEBHHHHHHHHHHTTCCEEEEEECCSCC
T ss_pred ccccccccchhhhhhhHHH-HHHHhcCCcceEEEEEcccccccccccCCceeeCCHHHHHHHHHHcCCEEEEEEEeCCCC
Confidence 99665 2 33456676 9999999999999986322211 000001111233 355588999998876655454
Q ss_pred Cc
Q 021911 288 RD 289 (305)
Q Consensus 288 ~~ 289 (305)
+.
T Consensus 211 ~~ 212 (222)
T d2ex4a1 211 DE 212 (222)
T ss_dssp TT
T ss_pred cc
Confidence 43
|
| >d1dl5a1 c.66.1.7 (A:1-213) Protein-L-isoaspartyl O-methyltransferase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Protein-L-isoaspartyl O-methyltransferase domain: Protein-L-isoaspartyl O-methyltransferase species: Thermotoga maritima [TaxId: 2336]
Probab=99.57 E-value=3.5e-15 Score=127.46 Aligned_cols=112 Identities=28% Similarity=0.351 Sum_probs=87.2
Q ss_pred HHHHHHHccccccCCCCCCEEEEEecCCCccHHHHHhhhCCCcEEEEEeCChHHHHHHHHHHHcC--CCeEEEEccCCCC
Q 021911 127 KLAAAVLGGVDNIWIKPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKR--TNVIPIIEDARHP 204 (305)
Q Consensus 127 ~l~a~ll~~l~~~~~~~g~~VLDlG~G~G~~t~~la~~~~~~~~V~avD~s~~~~~~l~~~a~~~--~nI~~~~~D~~~~ 204 (305)
.+.+.+++.| .++++++|||+|||+|.++..+|+.+++.+.|+++|+++..++.+.+..++. .|+.+++.|+...
T Consensus 62 ~~~a~~l~~l---~l~~g~~VLdiG~GtG~~s~~la~~~~~~g~V~~id~~~~~~~~a~~~~~~~~~~n~~~~~~d~~~~ 138 (213)
T d1dl5a1 62 SLMALFMEWV---GLDKGMRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVERLGIENVIFVCGDGYYG 138 (213)
T ss_dssp HHHHHHHHHT---TCCTTCEEEEECCTTSHHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHTTCCSEEEEESCGGGC
T ss_pred hhhHHHHHhh---hccccceEEEecCccchhHHHHHHHhCCCCcEEEeecchhhHHHhhhhHhhhcccccccccCchHHc
Confidence 4555555444 6899999999999999999999999988899999999996666665555543 7899999998765
Q ss_pred cccccCCCcEeEEEEeCCChhHHHHHHHHHhccCCCCcEEEEEE
Q 021911 205 AKYRMLVGMVDVIFSDVAQPDQARILALNASYFLKAGGHFVISI 248 (305)
Q Consensus 205 ~~~~~~~~~fD~V~~d~~~~~~~~~l~~~a~~~LkpGG~lv~s~ 248 (305)
... ..+||+|+++.+.+...+ ++.+.|||||+|++.+
T Consensus 139 ~~~---~~~fD~I~~~~~~~~~p~----~l~~~LkpGG~lv~pv 175 (213)
T d1dl5a1 139 VPE---FSPYDVIFVTVGVDEVPE----TWFTQLKEGGRVIVPI 175 (213)
T ss_dssp CGG---GCCEEEEEECSBBSCCCH----HHHHHEEEEEEEEEEB
T ss_pred ccc---ccchhhhhhhccHHHhHH----HHHHhcCCCcEEEEEE
Confidence 432 468999999887544322 3346799999999865
|
| >d1dusa_ c.66.1.4 (A:) Hypothetical protein MJ0882 {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Hypothetical protein MJ0882 domain: Hypothetical protein MJ0882 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=99.57 E-value=2.2e-14 Score=120.46 Aligned_cols=102 Identities=16% Similarity=0.173 Sum_probs=81.2
Q ss_pred cCCCCCCEEEEEecCCCccHHHHHhhhCCCcEEEEEeCChHHHHHHHHHHHcC----CCeEEEEccCCCCcccccCCCcE
Q 021911 139 IWIKPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKR----TNVIPIIEDARHPAKYRMLVGMV 214 (305)
Q Consensus 139 ~~~~~g~~VLDlG~G~G~~t~~la~~~~~~~~V~avD~s~~~~~~l~~~a~~~----~nI~~~~~D~~~~~~~~~~~~~f 214 (305)
+.+.++.+|||+|||+|.++.++|... .+|+++|+|+.++..+.++++.. .++.++..|+.+.. ...+|
T Consensus 48 l~~~~~~~VLDiGcG~G~~~~~la~~~---~~v~~iD~s~~~i~~a~~n~~~~~l~~~~i~~~~~d~~~~~----~~~~f 120 (194)
T d1dusa_ 48 VVVDKDDDILDLGCGYGVIGIALADEV---KSTTMADINRRAIKLAKENIKLNNLDNYDIRVVHSDLYENV----KDRKY 120 (194)
T ss_dssp CCCCTTCEEEEETCTTSHHHHHHGGGS---SEEEEEESCHHHHHHHHHHHHHTTCTTSCEEEEECSTTTTC----TTSCE
T ss_pred CCcCCCCeEEEEeecCChhHHHHHhhc---cccceeeeccccchhHHHHHHHhCCccceEEEEEcchhhhh----ccCCc
Confidence 367889999999999999999999864 38999999997777666665543 46899999987643 24699
Q ss_pred eEEEEeCCC---hhH-HHHHHHHHhccCCCCcEEEEEE
Q 021911 215 DVIFSDVAQ---PDQ-ARILALNASYFLKAGGHFVISI 248 (305)
Q Consensus 215 D~V~~d~~~---~~~-~~~l~~~a~~~LkpGG~lv~s~ 248 (305)
|+|++++|. .+. .+++. ++.++|||+|.|++++
T Consensus 121 D~Ii~~~p~~~~~~~~~~~l~-~~~~~LkpgG~l~i~~ 157 (194)
T d1dusa_ 121 NKIITNPPIRAGKEVLHRIIE-EGKELLKDNGEIWVVI 157 (194)
T ss_dssp EEEEECCCSTTCHHHHHHHHH-HHHHHEEEEEEEEEEE
T ss_pred eEEEEcccEEecchhhhhHHH-HHHHhcCcCcEEEEEE
Confidence 999999983 333 34455 8999999999998876
|
| >d1vlma_ c.66.1.41 (A:) Possible histamine N-methyltransferase TM1293 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: UbiE/COQ5-like domain: Possible histamine N-methyltransferase TM1293 species: Thermotoga maritima [TaxId: 2336]
Probab=99.56 E-value=9.3e-15 Score=123.44 Aligned_cols=126 Identities=22% Similarity=0.294 Sum_probs=90.5
Q ss_pred CCCCCEEEEEecCCCccHHHHHhhhCCCcEEEEEeCChHHHHHHHHHHHcCCCeEEEEccCCCCcccccCCCcEeEEEEe
Q 021911 141 IKPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKRTNVIPIIEDARHPAKYRMLVGMVDVIFSD 220 (305)
Q Consensus 141 ~~~g~~VLDlG~G~G~~t~~la~~~~~~~~V~avD~s~~~~~~l~~~a~~~~nI~~~~~D~~~~~~~~~~~~~fD~V~~d 220 (305)
+.+..+|||||||+|.++..++ ++++||+|+ .+++.++++ ++.+++.|+.+.+. ..++||+|++.
T Consensus 34 ~~~~~~vLDiGcG~G~~~~~~~-------~~~giD~s~----~~~~~a~~~-~~~~~~~d~~~l~~---~~~~fD~I~~~ 98 (208)
T d1vlma_ 34 LLPEGRGVEIGVGTGRFAVPLK-------IKIGVEPSE----RMAEIARKR-GVFVLKGTAENLPL---KDESFDFALMV 98 (208)
T ss_dssp HCCSSCEEEETCTTSTTHHHHT-------CCEEEESCH----HHHHHHHHT-TCEEEECBTTBCCS---CTTCEEEEEEE
T ss_pred hCCCCeEEEECCCCcccccccc-------eEEEEeCCh----hhccccccc-cccccccccccccc---ccccccccccc
Confidence 3456789999999999887763 368999999 777777764 79999999987653 35799999997
Q ss_pred CC---ChhHHHHHHHHHhccCCCCcEEEEEEccccc----------C-CCCchhh--hHHHH-HHHHHHCCCcEeEEee
Q 021911 221 VA---QPDQARILALNASYFLKAGGHFVISIKANCI----------D-STVPAEA--VFQSE-VKKLQQDQFKPFEQVT 282 (305)
Q Consensus 221 ~~---~~~~~~~l~~~a~~~LkpGG~lv~s~~~~~i----------~-~~~~~~~--v~~~~-~~~l~~~Gf~~~e~~~ 282 (305)
.. .++...++. +++++|||||.|++.++.... . ....... .-.++ .+.|+++||+++++..
T Consensus 99 ~~l~h~~d~~~~l~-~~~~~L~pgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~~~l~~~Gf~~i~v~~ 176 (208)
T d1vlma_ 99 TTICFVDDPERALK-EAYRILKKGGYLIVGIVDRESFLGREYEKNKEKSVFYKNARFFSTEELMDLMRKAGFEEFKVVQ 176 (208)
T ss_dssp SCGGGSSCHHHHHH-HHHHHEEEEEEEEEEEECSSSHHHHHHHHTTTC-CCSTTCCCCCHHHHHHHHHHTTCEEEEEEE
T ss_pred cccccccccccchh-hhhhcCCCCceEEEEecCCcchhHHhhhhccccccccccccCCCHHHHHHHHHHcCCeEEEEEE
Confidence 66 456777777 999999999999998742210 0 0000000 11233 4567899999877553
|
| >d1kpga_ c.66.1.18 (A:) CmaA1 {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Mycolic acid cyclopropane synthase domain: CmaA1 species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=99.56 E-value=2.7e-14 Score=127.01 Aligned_cols=104 Identities=16% Similarity=0.196 Sum_probs=84.0
Q ss_pred ccccCCCCCCEEEEEecCCCccHHHHHhhhCCCcEEEEEeCChHHHHHHHHHHHcC---CCeEEEEccCCCCcccccCCC
Q 021911 136 VDNIWIKPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKR---TNVIPIIEDARHPAKYRMLVG 212 (305)
Q Consensus 136 l~~~~~~~g~~VLDlG~G~G~~t~~la~~~~~~~~V~avD~s~~~~~~l~~~a~~~---~nI~~~~~D~~~~~~~~~~~~ 212 (305)
++++.++|+++|||||||+|.++.++|+..+ ++|++|++|+..++.+.+.+++. .++.+...|...+ +.
T Consensus 55 ~~~l~l~~G~~VLDiGCG~G~~a~~~a~~~g--~~v~git~s~~Q~~~a~~~~~~~g~~~~v~~~~~d~~~~------~~ 126 (285)
T d1kpga_ 55 LGKLGLQPGMTLLDVGCGWGATMMRAVEKYD--VNVVGLTLSKNQANHVQQLVANSENLRSKRVLLAGWEQF------DE 126 (285)
T ss_dssp HTTTTCCTTCEEEEETCTTSHHHHHHHHHHC--CEEEEEESCHHHHHHHHHHHHTCCCCSCEEEEESCGGGC------CC
T ss_pred HHHcCCCCCCEEEEecCcchHHHHHHHhcCC--cceEEEeccHHHHHHHHHHHHhhhhhhhhHHHHhhhhcc------cc
Confidence 3455799999999999999999999999964 79999999997766666665544 6889999998654 36
Q ss_pred cEeEEEEeCC-----ChhHHHHHHHHHhccCCCCcEEEEEE
Q 021911 213 MVDVIFSDVA-----QPDQARILALNASYFLKAGGHFVISI 248 (305)
Q Consensus 213 ~fD~V~~d~~-----~~~~~~~l~~~a~~~LkpGG~lv~s~ 248 (305)
+||.|++--. ..+....+. ++.++|||||++++.+
T Consensus 127 ~fD~i~si~~~eh~~~~~~~~~~~-~~~r~LkpgG~~~l~~ 166 (285)
T d1kpga_ 127 PVDRIVSIGAFEHFGHERYDAFFS-LAHRLLPADGVMLLHT 166 (285)
T ss_dssp CCSEEEEESCGGGTCTTTHHHHHH-HHHHHSCTTCEEEEEE
T ss_pred cccceeeehhhhhcCchhHHHHHH-HHHhhcCCCCcEEEEE
Confidence 8999998443 344566666 9999999999999876
|
| >d1ve3a1 c.66.1.43 (A:2-227) Hypothetical protein PH0226 {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: CAC2371-like domain: Hypothetical protein PH0226 species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=99.56 E-value=1.4e-14 Score=123.14 Aligned_cols=102 Identities=24% Similarity=0.249 Sum_probs=80.4
Q ss_pred CCCCCCEEEEEecCCCccHHHHHhhhCCCcEEEEEeCChHHHHHHHHHHHcC-CCeEEEEccCCCCcccccCCCcEeEEE
Q 021911 140 WIKPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKR-TNVIPIIEDARHPAKYRMLVGMVDVIF 218 (305)
Q Consensus 140 ~~~~g~~VLDlG~G~G~~t~~la~~~~~~~~V~avD~s~~~~~~l~~~a~~~-~nI~~~~~D~~~~~~~~~~~~~fD~V~ 218 (305)
.+++..+|||||||+|.++.++++. ..+|+++|+|+.++..+.+.+... .++.+++.|+.+.+. ..++||+|+
T Consensus 34 ~l~~~~~ILDiGcG~G~~~~~la~~---~~~v~giD~S~~~i~~ak~~~~~~~~~~~~~~~d~~~l~~---~~~~fD~I~ 107 (226)
T d1ve3a1 34 YMKKRGKVLDLACGVGGFSFLLEDY---GFEVVGVDISEDMIRKAREYAKSRESNVEFIVGDARKLSF---EDKTFDYVI 107 (226)
T ss_dssp SCCSCCEEEEETCTTSHHHHHHHHT---TCEEEEEESCHHHHHHHHHHHHHTTCCCEEEECCTTSCCS---CTTCEEEEE
T ss_pred hcCCCCEEEEECCCcchhhhhHhhh---hcccccccccccchhhhhhhhccccccccccccccccccc---cCcCceEEE
Confidence 4568899999999999999999986 358999999996655555544433 578899999988652 357999999
Q ss_pred EeCC-----ChhHHHHHHHHHhccCCCCcEEEEEE
Q 021911 219 SDVA-----QPDQARILALNASYFLKAGGHFVISI 248 (305)
Q Consensus 219 ~d~~-----~~~~~~~l~~~a~~~LkpGG~lv~s~ 248 (305)
+... ..+...+|. ++.++|||||+|++.+
T Consensus 108 ~~~~l~~~~~~d~~~~l~-~i~~~LkpgG~lii~~ 141 (226)
T d1ve3a1 108 FIDSIVHFEPLELNQVFK-EVRRVLKPSGKFIMYF 141 (226)
T ss_dssp EESCGGGCCHHHHHHHHH-HHHHHEEEEEEEEEEE
T ss_pred EecchhhCChhHHHHHHH-HHHHHcCcCcEEEEEE
Confidence 8665 124556676 9999999999999886
|
| >d1kpia_ c.66.1.18 (A:) CmaA2 {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Mycolic acid cyclopropane synthase domain: CmaA2 species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=99.55 E-value=3.6e-14 Score=126.60 Aligned_cols=104 Identities=17% Similarity=0.130 Sum_probs=81.3
Q ss_pred ccccCCCCCCEEEEEecCCCccHHHHHhhhCCCcEEEEEeCChHHHHHHHHHHHcC---CCeEEEEccCCCCcccccCCC
Q 021911 136 VDNIWIKPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKR---TNVIPIIEDARHPAKYRMLVG 212 (305)
Q Consensus 136 l~~~~~~~g~~VLDlG~G~G~~t~~la~~~~~~~~V~avD~s~~~~~~l~~~a~~~---~nI~~~~~D~~~~~~~~~~~~ 212 (305)
++++.++++++|||||||+|.++.++|+..+ ++|++|++|+..+....+.++.. ..+.+...|...+ ++
T Consensus 54 ~~~l~l~~G~~VLDiGCG~G~~~~~~a~~~g--~~v~git~s~~q~~~a~~~~~~~~l~~~v~~~~~d~~~~------~~ 125 (291)
T d1kpia_ 54 LDKLNLEPGMTLLDIGCGWGSTMRHAVAEYD--VNVIGLTLSENQYAHDKAMFDEVDSPRRKEVRIQGWEEF------DE 125 (291)
T ss_dssp HHTTCCCTTCEEEEETCTTSHHHHHHHHHHC--CEEEEEESCHHHHHHHHHHHHHSCCSSCEEEEECCGGGC------CC
T ss_pred HHhcCCCCCCEEEEecCcchHHHHHHHHhcC--cceeeccchHHHHHHHHHHHHhhccchhhhhhhhccccc------cc
Confidence 3555799999999999999999999999864 69999999997766666666554 4577777776432 47
Q ss_pred cEeEEEEeCCC------------hhHHHHHHHHHhccCCCCcEEEEEE
Q 021911 213 MVDVIFSDVAQ------------PDQARILALNASYFLKAGGHFVISI 248 (305)
Q Consensus 213 ~fD~V~~d~~~------------~~~~~~l~~~a~~~LkpGG~lv~s~ 248 (305)
+||.|++.-.. ......+. ++.++|||||++++.+
T Consensus 126 ~fD~i~sie~~eH~~~~~~~~~~~~~~~~f~-~i~~~LkpgG~~~l~~ 172 (291)
T d1kpia_ 126 PVDRIVSLGAFEHFADGAGDAGFERYDTFFK-KFYNLTPDDGRMLLHT 172 (291)
T ss_dssp CCSEEEEESCGGGTTCCSSCCSTTHHHHHHH-HHHHTSCTTCEEEEEE
T ss_pred ccceEeechhHHhcchhhhhhHHHHHHHHHH-HHHHhCCCCCceEEEE
Confidence 89999984441 23455665 9999999999999976
|
| >d2i6ga1 c.66.1.44 (A:1-198) Putative methyltransferase TehB {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: TehB-like domain: Putative methyltransferase TehB species: Salmonella typhimurium [TaxId: 90371]
Probab=99.55 E-value=3.7e-14 Score=119.16 Aligned_cols=100 Identities=23% Similarity=0.204 Sum_probs=79.6
Q ss_pred CCCCCEEEEEecCCCccHHHHHhhhCCCcEEEEEeCChHHHHHHHHHHHcC--CCeEEEEccCCCCcccccCCCcEeEEE
Q 021911 141 IKPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKR--TNVIPIIEDARHPAKYRMLVGMVDVIF 218 (305)
Q Consensus 141 ~~~g~~VLDlG~G~G~~t~~la~~~~~~~~V~avD~s~~~~~~l~~~a~~~--~nI~~~~~D~~~~~~~~~~~~~fD~V~ 218 (305)
+.+ .+|||||||+|..+..+++.. .+|++||+|+.+++.+.+.++.. +++.+.+.|+..... +++||+|+
T Consensus 29 ~~~-grvLDiGcG~G~~~~~la~~g---~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~d~~~~~~----~~~fD~I~ 100 (198)
T d2i6ga1 29 VAP-GRTLDLGCGNGRNSLYLAANG---YDVTAWDKNPASMANLERIKAAEGLDNLQTDLVDLNTLTF----DGEYDFIL 100 (198)
T ss_dssp SCS-CEEEEETCTTSHHHHHHHHTT---CEEEEEESCHHHHHHHHHHHHHTTCTTEEEEECCTTTCCC----CCCEEEEE
T ss_pred CCC-CcEEEECCCCCHHHHHHHHHh---hhhccccCcHHHHHHHHHHhhhccccchhhhheecccccc----cccccEEE
Confidence 444 599999999999999999872 48999999997766665555544 689999999887653 47899999
Q ss_pred EeCC-----ChhHHHHHHHHHhccCCCCcEEEEEEc
Q 021911 219 SDVA-----QPDQARILALNASYFLKAGGHFVISIK 249 (305)
Q Consensus 219 ~d~~-----~~~~~~~l~~~a~~~LkpGG~lv~s~~ 249 (305)
+... .++...++. ++.++|+|+|++++++.
T Consensus 101 ~~~~~~~~~~~~~~~~l~-~~~~~L~pgG~~~~~~~ 135 (198)
T d2i6ga1 101 STVVMMFLEAQTIPGLIA-NMQRCTKPGGYNLIVAA 135 (198)
T ss_dssp EESCGGGSCTTHHHHHHH-HHHHTEEEEEEEEEEEE
T ss_pred EeeeeecCCHHHHHHHHH-HHHHHcCCCcEEEEEEe
Confidence 9665 234456666 99999999999999873
|
| >d2frna1 c.66.1.47 (A:19-278) Hypothetical protein PH0793 {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Met-10+ protein-like domain: Hypothetical protein PH0793 species: Pyrococcus horikoshii [TaxId: 53953]
Probab=99.54 E-value=1.1e-13 Score=121.51 Aligned_cols=101 Identities=17% Similarity=0.072 Sum_probs=82.3
Q ss_pred CCCCCCEEEEEecCCCccHHHHHhhhCCCcEEEEEeCChHHHHHHHHHHHcC---CCeEEEEccCCCCcccccCCCcEeE
Q 021911 140 WIKPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKR---TNVIPIIEDARHPAKYRMLVGMVDV 216 (305)
Q Consensus 140 ~~~~g~~VLDlG~G~G~~t~~la~~~~~~~~V~avD~s~~~~~~l~~~a~~~---~nI~~~~~D~~~~~~~~~~~~~fD~ 216 (305)
..+++++|||++||+|.+++++|.. ..++|+|+|+|+.+++.+.++++.+ .+|++++.|+++... ...||.
T Consensus 104 ~~~~g~~VlD~~aG~G~~~l~~a~~--~~~~V~avd~n~~a~~~~~~N~~~n~l~~~v~~~~~D~~~~~~----~~~~D~ 177 (260)
T d2frna1 104 VAKPDELVVDMFAGIGHLSLPIAVY--GKAKVIAIEKDPYTFKFLVENIHLNKVEDRMSAYNMDNRDFPG----ENIADR 177 (260)
T ss_dssp HCCTTCEEEETTCTTTTTHHHHHHH--TCCEEEEECCCHHHHHHHHHHHHHTTCTTTEEEECSCTTTCCC----CSCEEE
T ss_pred hcCCccEEEECcceEcHHHHHHHHh--CCcEEEEecCCHHHHHHHHHHHHHhCCCceEEEEEcchHHhcc----CCCCCE
Confidence 3578999999999999999999987 4569999999998888888777765 469999999987753 368999
Q ss_pred EEEeCCChhHHHHHHHHHhccCCCCcEEEEEE
Q 021911 217 IFSDVAQPDQARILALNASYFLKAGGHFVISI 248 (305)
Q Consensus 217 V~~d~~~~~~~~~l~~~a~~~LkpGG~lv~s~ 248 (305)
|++++|... .+.+. .+.++||+||+|.+..
T Consensus 178 Ii~~~p~~~-~~~l~-~a~~~l~~gG~lh~~~ 207 (260)
T d2frna1 178 ILMGYVVRT-HEFIP-KALSIAKDGAIIHYHN 207 (260)
T ss_dssp EEECCCSSG-GGGHH-HHHHHEEEEEEEEEEE
T ss_pred EEECCCCch-HHHHH-HHHhhcCCCCEEEEEe
Confidence 999877432 23444 7888999999997754
|
| >d1i1na_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Protein-L-isoaspartyl O-methyltransferase domain: Protein-L-isoaspartyl O-methyltransferase species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.54 E-value=3.6e-15 Score=128.42 Aligned_cols=163 Identities=20% Similarity=0.237 Sum_probs=107.1
Q ss_pred eeecccccCceEEEeCCccee--eeccccCCccccCcceeEeecCCCceeeeeecCchhhHHHHHHHccccccCCCCCCE
Q 021911 69 VVVEPHRHEGVFIAKGKEDAL--VTKNLVAGEAVYNEKRISVQNEDGTKVEYRIWNPFRSKLAAAVLGGVDNIWIKPGAR 146 (305)
Q Consensus 69 ~~~~~~~~~gv~~~~~~~~~l--~t~~~~~~~~~y~e~~~~~~d~~~~~~~~~~~~~~~s~l~a~ll~~l~~~~~~~g~~ 146 (305)
-+|+.++..|+.......+++ +.+.....+..|.+.-+.+.+. ...- ...+.+.+++.|. .+++|+++
T Consensus 10 ~mv~~l~~~g~i~~~~v~~a~~~vpRe~Fvp~~aY~D~~l~i~~~------~~is---~P~~~a~~le~L~-~~l~~g~~ 79 (224)
T d1i1na_ 10 ELIHNLRKNGIIKTDKVFEVMLATDRSHYAKCNPYMDSPQSIGFQ------ATIS---APHMHAYALELLF-DQLHEGAK 79 (224)
T ss_dssp HHHHHHHHTTSCCSHHHHHHHHTSCGGGTCSSCTTSSSCEEEETT------EEEC---CHHHHHHHHHHTT-TTSCTTCE
T ss_pred HHHHHHHHcCCCCCHHHHHHHHhCCHHHcCCcccCCCCCccccch------hhhh---hhHHHHHHHHHHh-hccCCCCe
Confidence 355666666654332222222 2232222234566655544332 0111 1235566665443 15789999
Q ss_pred EEEEecCCCccHHHHHhhhCCCcEEEEEeCChHHHHHHHHHHHcC-------CCeEEEEccCCCCcccccCCCcEeEEEE
Q 021911 147 VLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKR-------TNVIPIIEDARHPAKYRMLVGMVDVIFS 219 (305)
Q Consensus 147 VLDlG~G~G~~t~~la~~~~~~~~V~avD~s~~~~~~l~~~a~~~-------~nI~~~~~D~~~~~~~~~~~~~fD~V~~ 219 (305)
|||+|||+|..+..+|+.+++.++|+++|+++..++.+.+.+++. .++.+++.|+...... ..+||+|++
T Consensus 80 VLdiG~GsGy~ta~la~l~~~~g~V~~ie~~~~l~~~a~~~l~~~~~~~~~~~~~~~~~gD~~~~~~~---~~~fD~I~~ 156 (224)
T d1i1na_ 80 ALDVGSGSGILTACFARMVGCTGKVIGIDHIKELVDDSVNNVRKDDPTLLSSGRVQLVVGDGRMGYAE---EAPYDAIHV 156 (224)
T ss_dssp EEEETCTTSHHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHCTHHHHTSSEEEEESCGGGCCGG---GCCEEEEEE
T ss_pred EEEecCCCCHHHHHHHHHhCCCceEEEEcCCHHHHHHHHHhccccCcccccccceEEEEeecccccch---hhhhhhhhh
Confidence 999999999999999999998999999999996666655554432 5789999998765432 468999999
Q ss_pred eCCChhHHHHHHHHHhccCCCCcEEEEEE
Q 021911 220 DVAQPDQARILALNASYFLKAGGHFVISI 248 (305)
Q Consensus 220 d~~~~~~~~~l~~~a~~~LkpGG~lv~s~ 248 (305)
+...+.-.+ .+.+.|||||+|++.+
T Consensus 157 ~~~~~~ip~----~l~~~LkpGG~LV~pv 181 (224)
T d1i1na_ 157 GAAAPVVPQ----ALIDQLKPGGRLILPV 181 (224)
T ss_dssp CSBBSSCCH----HHHHTEEEEEEEEEEE
T ss_pred hcchhhcCH----HHHhhcCCCcEEEEEE
Confidence 877554322 3447899999999976
|
| >d1xtpa_ c.66.1.42 (A:) Hypothetical protein Lmaj004091aaa (LmjF30.0810) {Leishmania major [TaxId: 5664]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: AD-003 protein-like domain: Hypothetical protein Lmaj004091aaa (LmjF30.0810) species: Leishmania major [TaxId: 5664]
Probab=99.54 E-value=1.4e-14 Score=126.92 Aligned_cols=145 Identities=10% Similarity=0.019 Sum_probs=97.7
Q ss_pred cccCCCCCCEEEEEecCCCccHHHHHhhhCCCcEEEEEeCChHHHHHHHHHHHcCCCeEEEEccCCCCcccccCCCcEeE
Q 021911 137 DNIWIKPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKRTNVIPIIEDARHPAKYRMLVGMVDV 216 (305)
Q Consensus 137 ~~~~~~~g~~VLDlG~G~G~~t~~la~~~~~~~~V~avD~s~~~~~~l~~~a~~~~nI~~~~~D~~~~~~~~~~~~~fD~ 216 (305)
+.+...+..+|||+|||+|.++.+|+.... ..|++||+|+.+++.+.+.+...+++.+++.|+.++.. ...+||+
T Consensus 87 ~~l~~~~~~~vLD~GcG~G~~t~~ll~~~~--~~v~~vD~s~~~l~~a~~~~~~~~~~~~~~~d~~~~~~---~~~~fD~ 161 (254)
T d1xtpa_ 87 ASLPGHGTSRALDCGAGIGRITKNLLTKLY--ATTDLLEPVKHMLEEAKRELAGMPVGKFILASMETATL---PPNTYDL 161 (254)
T ss_dssp HTSTTCCCSEEEEETCTTTHHHHHTHHHHC--SEEEEEESCHHHHHHHHHHTTTSSEEEEEESCGGGCCC---CSSCEEE
T ss_pred hhCCCCCCCeEEEecccCChhhHHHHhhcC--ceEEEEcCCHHHHHhhhccccccccceeEEcccccccc---CCCccce
Confidence 334556778999999999999999887642 38999999995555544444444678999999977653 3579999
Q ss_pred EEEeCC---Ch--hHHHHHHHHHhccCCCCcEEEEEEcccccC----CCCchhh-hHHHH-HHHHHHCCCcEeEEeecCC
Q 021911 217 IFSDVA---QP--DQARILALNASYFLKAGGHFVISIKANCID----STVPAEA-VFQSE-VKKLQQDQFKPFEQVTLEP 285 (305)
Q Consensus 217 V~~d~~---~~--~~~~~l~~~a~~~LkpGG~lv~s~~~~~i~----~~~~~~~-v~~~~-~~~l~~~Gf~~~e~~~l~p 285 (305)
|++... .+ +..++|. +++++|||+|+|++....+... ...+... .-.++ .+.++++||++++...-..
T Consensus 162 I~~~~vl~hl~d~d~~~~l~-~~~~~LkpgG~iii~e~~~~~~~~~~d~~d~~~~rs~~~~~~l~~~aGf~ii~~~~q~~ 240 (254)
T d1xtpa_ 162 IVIQWTAIYLTDADFVKFFK-HCQQALTPNGYIFFKENCSTGDRFLVDKEDSSLTRSDIHYKRLFNESGVRVVKEAFQEE 240 (254)
T ss_dssp EEEESCGGGSCHHHHHHHHH-HHHHHEEEEEEEEEEEEBC--CCEEEETTTTEEEBCHHHHHHHHHHHTCCEEEEEECTT
T ss_pred EEeeccccccchhhhHHHHH-HHHHhcCCCcEEEEEecCCCCCcceecccCCceeCCHHHHHHHHHHcCCEEEEEEeeCC
Confidence 999766 22 3346666 9999999999999976321110 0011111 11222 3456889999988765444
Q ss_pred CC
Q 021911 286 FE 287 (305)
Q Consensus 286 ~~ 287 (305)
|.
T Consensus 241 fP 242 (254)
T d1xtpa_ 241 WP 242 (254)
T ss_dssp CC
T ss_pred CC
Confidence 43
|
| >d2b3ta1 c.66.1.30 (A:2-275) N5-glutamine methyltransferase, HemK {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: N5-glutamine methyltransferase, HemK domain: N5-glutamine methyltransferase, HemK species: Escherichia coli [TaxId: 562]
Probab=99.54 E-value=5.6e-14 Score=124.07 Aligned_cols=174 Identities=16% Similarity=0.156 Sum_probs=117.0
Q ss_pred cCCccccCcceeEeecCCCceeeeeecCchhhHHHHHHHccccccCCCCCCEEEEEecCCCccHHHHHhhhCCCcEEEEE
Q 021911 95 VAGEAVYNEKRISVQNEDGTKVEYRIWNPFRSKLAAAVLGGVDNIWIKPGARVLYLGAASGTTVSHVSDIVGPNGVVYAV 174 (305)
Q Consensus 95 ~~~~~~y~e~~~~~~d~~~~~~~~~~~~~~~s~l~a~ll~~l~~~~~~~g~~VLDlG~G~G~~t~~la~~~~~~~~V~av 174 (305)
+.++..|..-.|.+... -..-.|....++..++.. ......+|||+|||+|..++.+|... +...|+++
T Consensus 70 I~G~~~F~~~~~~v~~~------VlIPRpeTE~lv~~~l~~----~~~~~~~vlDlGtGSG~I~i~la~~~-p~~~v~av 138 (274)
T d2b3ta1 70 LTGVREFWSLPLFVSPA------TLIPRPDTECLVEQALAR----LPEQPCRILDLGTGTGAIALALASER-PDCEIIAV 138 (274)
T ss_dssp HSCEEEETTEEEECCTT------SCCCCTTHHHHHHHHHHH----SCSSCCEEEEETCTTSHHHHHHHHHC-TTSEEEEE
T ss_pred hcCcEEEeeeEEEEecc------ccccccchhhhhhhHhhh----hcccccceeeeehhhhHHHHHHHhhC-Ccceeeec
Confidence 45566666666666542 122234455666666532 23446789999999999999999886 67899999
Q ss_pred eCChHHHHHHHHHHHcC--CCeEEEEccCCCCcccccCCCcEeEEEEeCCC----------------------------h
Q 021911 175 EFSHRSGRDLVNMAKKR--TNVIPIIEDARHPAKYRMLVGMVDVIFSDVAQ----------------------------P 224 (305)
Q Consensus 175 D~s~~~~~~l~~~a~~~--~nI~~~~~D~~~~~~~~~~~~~fD~V~~d~~~----------------------------~ 224 (305)
|+|+.++.-+.+++++. .||.+++.|+.+..+ ..+||+|++|+|. .
T Consensus 139 Dis~~Al~~A~~Na~~~~~~~v~~~~~d~~~~~~----~~~fDlIvsNPPYi~~~~~~~~~~v~~~eP~~AL~~g~dGl~ 214 (274)
T d2b3ta1 139 DRMPDAVSLAQRNAQHLAIKNIHILQSDWFSALA----GQQFAMIVSNPPYIDEQDPHLQQGDVRFEPLTALVAADSGMA 214 (274)
T ss_dssp CSSHHHHHHHHHHHHHHTCCSEEEECCSTTGGGT----TCCEEEEEECCCCBCTTCHHHHSSGGGSSCSTTTBCHHHHTH
T ss_pred cchhHHHhHHHHHHHHhCcccceeeecccccccC----CCceeEEEecchhhhhhhhcccccccccchhhhcccccccch
Confidence 99997776666666544 589999999876532 3689999999991 0
Q ss_pred hHHHHHHHHHhccCCCCcEEEEEEcccccCCCCchhhhHHHHHHHHHHCCCcEeEE-eecCCCCCceEEEEEEE
Q 021911 225 DQARILALNASYFLKAGGHFVISIKANCIDSTVPAEAVFQSEVKKLQQDQFKPFEQ-VTLEPFERDHACVVGGY 297 (305)
Q Consensus 225 ~~~~~l~~~a~~~LkpGG~lv~s~~~~~i~~~~~~~~v~~~~~~~l~~~Gf~~~e~-~~l~p~~~~~~~vv~~~ 297 (305)
...+++. ++.++|+|+|.|++.+-. .... ...+.+++.||..+++ .++.- ++. +|+|+|
T Consensus 215 ~~~~i~~-~a~~~L~~~G~l~lEig~------~q~~----~v~~~l~~~gf~~i~~~kDl~g--~~R-~v~~r~ 274 (274)
T d2b3ta1 215 DIVHIIE-QSRNALVSGGFLLLEHGW------QQGE----AVRQAFILAGYHDVETCRDYGD--NER-VTLGRY 274 (274)
T ss_dssp HHHHHHH-HHGGGEEEEEEEEEECCS------SCHH----HHHHHHHHTTCTTCCEEECTTS--SEE-EEEEEC
T ss_pred HHHHHHH-HHHHhcCCCCEEEEEECc------hHHH----HHHHHHHHCCCCeEEEEECCCC--Cce-EEEEeC
Confidence 1334555 899999999999998611 1111 2235557889975543 34433 334 366654
|
| >d1pjza_ c.66.1.36 (A:) Thiopurine S-methyltransferase {Pseudomonas syringae [TaxId: 317]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Thiopurine S-methyltransferase domain: Thiopurine S-methyltransferase species: Pseudomonas syringae [TaxId: 317]
Probab=99.53 E-value=4.5e-14 Score=117.16 Aligned_cols=134 Identities=14% Similarity=0.094 Sum_probs=90.1
Q ss_pred CCCCCCEEEEEecCCCccHHHHHhhhCCCcEEEEEeCChHHHHHHHHHHHcC--------------CCeEEEEccCCCCc
Q 021911 140 WIKPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKR--------------TNVIPIIEDARHPA 205 (305)
Q Consensus 140 ~~~~g~~VLDlG~G~G~~t~~la~~~~~~~~V~avD~s~~~~~~l~~~a~~~--------------~nI~~~~~D~~~~~ 205 (305)
.+.|+.+|||+|||+|..+.+||+. ...|++||+|+.++..+.+.++.. .++.+++.|+....
T Consensus 17 ~~~~~~rvLd~GCG~G~~a~~la~~---G~~V~gvD~S~~~i~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~ 93 (201)
T d1pjza_ 17 NVVPGARVLVPLCGKSQDMSWLSGQ---GYHVVGAELSEAAVERYFTERGEQPHITSQGDFKVYAAPGIEIWCGDFFALT 93 (201)
T ss_dssp CCCTTCEEEETTTCCSHHHHHHHHH---CCEEEEEEECHHHHHHHHHHHCSCSEEEEETTEEEEECSSSEEEEECCSSST
T ss_pred CCCCCCEEEEecCcCCHHHHHHHHc---CCceEeecccHHHHHHHHHHhccccchhhhhhhhhccccccceecccccccc
Confidence 6889999999999999999999987 369999999996665555555332 34577888887765
Q ss_pred ccccCCCcEeEEEEeCC----Chh-HHHHHHHHHhccCCCCcEEEEEEcccccCCC-CchhhhHHHHHHHHHHCCCcEeE
Q 021911 206 KYRMLVGMVDVIFSDVA----QPD-QARILALNASYFLKAGGHFVISIKANCIDST-VPAEAVFQSEVKKLQQDQFKPFE 279 (305)
Q Consensus 206 ~~~~~~~~fD~V~~d~~----~~~-~~~~l~~~a~~~LkpGG~lv~s~~~~~i~~~-~~~~~v~~~~~~~l~~~Gf~~~e 279 (305)
.. ....||+|++... .++ ....+. +++++|||||++++.+........ .+...+-..++..+...+|++..
T Consensus 94 ~~--~~~~~D~i~~~~~l~~l~~~~~~~~~~-~i~~~LkpgG~l~l~~~~~~~~~~~~p~~~~~~~el~~l~~~~~~i~~ 170 (201)
T d1pjza_ 94 AR--DIGHCAAFYDRAAMIALPADMRERYVQ-HLEALMPQACSGLLITLEYDQALLEGPPFSVPQTWLHRVMSGNWEVTK 170 (201)
T ss_dssp HH--HHHSEEEEEEESCGGGSCHHHHHHHHH-HHHHHSCSEEEEEEEEESSCSSSSSSCCCCCCHHHHHHTSCSSEEEEE
T ss_pred cc--cccceeEEEEEeeeEecchhhhHHHHH-HHHHhcCCCcEEEEEEcccccccCCCccccCCHHHHHHHhCCCcEEEE
Confidence 43 2358999998555 223 444555 999999999999887632221111 11222333445555445666543
|
| >d1wzna1 c.66.1.43 (A:1-251) Hypothetical methyltransferase PH1305 {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: CAC2371-like domain: Hypothetical methyltransferase PH1305 species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=99.52 E-value=1.4e-14 Score=125.50 Aligned_cols=105 Identities=18% Similarity=0.163 Sum_probs=80.6
Q ss_pred ccccCCCCCCEEEEEecCCCccHHHHHhhhCCCcEEEEEeCChHHHHHHHHHHHcC-CCeEEEEccCCCCcccccCCCcE
Q 021911 136 VDNIWIKPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKR-TNVIPIIEDARHPAKYRMLVGMV 214 (305)
Q Consensus 136 l~~~~~~~g~~VLDlG~G~G~~t~~la~~~~~~~~V~avD~s~~~~~~l~~~a~~~-~nI~~~~~D~~~~~~~~~~~~~f 214 (305)
++.....+..+|||+|||+|..+..|++.. ..|++||+|+.++..+.+.+++. .++.++++|+++++. .++|
T Consensus 34 ~~~~~~~~~~~iLDiGcGtG~~~~~l~~~~---~~v~gvD~s~~mi~~a~~~~~~~~~~i~~~~~d~~~l~~----~~~f 106 (251)
T d1wzna1 34 FKEDAKREVRRVLDLACGTGIPTLELAERG---YEVVGLDLHEEMLRVARRKAKERNLKIEFLQGDVLEIAF----KNEF 106 (251)
T ss_dssp HHHTCSSCCCEEEEETCTTCHHHHHHHHTT---CEEEEEESCHHHHHHHHHHHHHTTCCCEEEESCGGGCCC----CSCE
T ss_pred HHHhcCCCCCEEEEeCCCCCccchhhcccc---eEEEEEeeccccccccccccccccccchheehhhhhccc----cccc
Confidence 344456677899999999999999999862 48999999996655555554443 579999999988752 4689
Q ss_pred eEEEEeCC------ChhHHHHHHHHHhccCCCCcEEEEEE
Q 021911 215 DVIFSDVA------QPDQARILALNASYFLKAGGHFVISI 248 (305)
Q Consensus 215 D~V~~d~~------~~~~~~~l~~~a~~~LkpGG~lv~s~ 248 (305)
|+|+|... .++....|. +++++|||||+|++.+
T Consensus 107 D~I~~~~~~~~~~~~~~~~~~L~-~~~~~LkpgG~lii~~ 145 (251)
T d1wzna1 107 DAVTMFFSTIMYFDEEDLRKLFS-KVAEALKPGGVFITDF 145 (251)
T ss_dssp EEEEECSSGGGGSCHHHHHHHHH-HHHHHEEEEEEEEEEE
T ss_pred chHhhhhhhhhcCChHHHHHHHH-HHHHHcCCCcEEEEEe
Confidence 99998432 234556665 9999999999999854
|
| >d2fk8a1 c.66.1.18 (A:22-301) Methoxy mycolic acid synthase 4, Mma4 {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Mycolic acid cyclopropane synthase domain: Methoxy mycolic acid synthase 4, Mma4 species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=99.52 E-value=4.3e-14 Score=125.52 Aligned_cols=104 Identities=17% Similarity=0.202 Sum_probs=81.6
Q ss_pred ccccCCCCCCEEEEEecCCCccHHHHHhhhCCCcEEEEEeCChHHHHHHHHHHHcC---CCeEEEEccCCCCcccccCCC
Q 021911 136 VDNIWIKPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKR---TNVIPIIEDARHPAKYRMLVG 212 (305)
Q Consensus 136 l~~~~~~~g~~VLDlG~G~G~~t~~la~~~~~~~~V~avD~s~~~~~~l~~~a~~~---~nI~~~~~D~~~~~~~~~~~~ 212 (305)
++.+.++|+++|||||||+|.++.++++..+ ++|++||+|+..++.+.+.+++. .++.+...|...+ +.
T Consensus 45 ~~~l~l~~g~~VLDiGCG~G~~a~~~a~~~g--~~v~gi~ls~~q~~~a~~~~~~~~l~~~~~~~~~d~~~~------~~ 116 (280)
T d2fk8a1 45 LDKLDLKPGMTLLDIGCGWGTTMRRAVERFD--VNVIGLTLSKNQHARCEQVLASIDTNRSRQVLLQGWEDF------AE 116 (280)
T ss_dssp HTTSCCCTTCEEEEESCTTSHHHHHHHHHHC--CEEEEEESCHHHHHHHHHHHHTSCCSSCEEEEESCGGGC------CC
T ss_pred HHHcCCCCCCEEEEecCCchHHHHHHHHhCc--eeEEEecchHHHHHHHHHHHHhhccccchhhhhhhhhhh------cc
Confidence 4555799999999999999999999998864 59999999997766666665554 4567777776543 46
Q ss_pred cEeEEEEeCC-----ChhHHHHHHHHHhccCCCCcEEEEEE
Q 021911 213 MVDVIFSDVA-----QPDQARILALNASYFLKAGGHFVISI 248 (305)
Q Consensus 213 ~fD~V~~d~~-----~~~~~~~l~~~a~~~LkpGG~lv~s~ 248 (305)
+||.|++--. .++....+. +++++|||||++++.+
T Consensus 117 ~fD~i~si~~~eh~~~~~~~~~f~-~i~~~LkpgG~~~i~~ 156 (280)
T d2fk8a1 117 PVDRIVSIEAFEHFGHENYDDFFK-RCFNIMPADGRMTVQS 156 (280)
T ss_dssp CCSEEEEESCGGGTCGGGHHHHHH-HHHHHSCTTCEEEEEE
T ss_pred chhhhhHhhHHHHhhhhhHHHHHH-HHHhccCCCceEEEEE
Confidence 8999998444 244466676 9999999999999965
|
| >d2bzga1 c.66.1.36 (A:17-245) Thiopurine S-methyltransferase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Thiopurine S-methyltransferase domain: Thiopurine S-methyltransferase species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.52 E-value=8.2e-14 Score=119.78 Aligned_cols=135 Identities=16% Similarity=0.110 Sum_probs=94.3
Q ss_pred CCCCCCEEEEEecCCCccHHHHHhhhCCCcEEEEEeCChHHHHHHHHHHHcC-------------------CCeEEEEcc
Q 021911 140 WIKPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKR-------------------TNVIPIIED 200 (305)
Q Consensus 140 ~~~~g~~VLDlG~G~G~~t~~la~~~~~~~~V~avD~s~~~~~~l~~~a~~~-------------------~nI~~~~~D 200 (305)
.+.++.+|||+|||+|..+..||+. ..+|+|||+|+.+++.+.+.+... .++.+++.|
T Consensus 42 ~~~~~~rvLd~GCG~G~~a~~LA~~---G~~V~gvD~S~~ai~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~d 118 (229)
T d2bzga1 42 KGKSGLRVFFPLCGKAVEMKWFADR---GHSVVGVEISELGIQEFFTEQNLSYSEEPITEIPGTKVFKSSSGNISLYCCS 118 (229)
T ss_dssp TTCCSCEEEETTCTTCTHHHHHHHT---TCEEEEECSCHHHHHHHHHHTTCCEEEEECTTSTTCEEEEETTSSEEEEESC
T ss_pred CCCCCCEEEEeCCCCcHHHHHHHhC---CCcEEEEeCCHHHHHHHHHHhhccccccchhcccccceeeecCCcEEEEEcc
Confidence 5778899999999999999999987 258999999997766655554321 478899999
Q ss_pred CCCCcccccCCCcEeEEEEeCC----ChhHHHHHHHHHhccCCCCcEEEEEEcccccCCC-CchhhhHHHHHHHHHHCCC
Q 021911 201 ARHPAKYRMLVGMVDVIFSDVA----QPDQARILALNASYFLKAGGHFVISIKANCIDST-VPAEAVFQSEVKKLQQDQF 275 (305)
Q Consensus 201 ~~~~~~~~~~~~~fD~V~~d~~----~~~~~~~l~~~a~~~LkpGG~lv~s~~~~~i~~~-~~~~~v~~~~~~~l~~~Gf 275 (305)
+.+.... ....||+|+.... .+++.+.+..++.++|||||++++.+........ -++..+-.+++..+-...|
T Consensus 119 ~~~l~~~--~~~~fd~i~~~~~l~~~~~~~r~~~~~~~~~~LkpgG~~~l~~~~~~~~~~~gpp~~~~~~el~~lf~~~~ 196 (229)
T d2bzga1 119 IFDLPRT--NIGKFDMIWDRGALVAINPGDRKCYADTMFSLLGKKFQYLLCVLSYDPTKHPGPPFYVPHAEIERLFGKIC 196 (229)
T ss_dssp GGGGGGS--CCCCEEEEEESSSTTTSCGGGHHHHHHHHHHTEEEEEEEEEEEEECCTTTCCCSSCCCCHHHHHHHHTTTE
T ss_pred hhhcccc--ccCceeEEEEEEEEEeccchhhHHHHHHHHhhcCCcceEEEEEcccCCCCCCCCCCCCCHHHHHHHhcCCC
Confidence 8776543 3579999997554 3444444444999999999999888743221111 1223344556666655667
Q ss_pred cEeE
Q 021911 276 KPFE 279 (305)
Q Consensus 276 ~~~e 279 (305)
++..
T Consensus 197 ~i~~ 200 (229)
T d2bzga1 197 NIRC 200 (229)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 6543
|
| >d1p91a_ c.66.1.33 (A:) rRNA methyltransferase RlmA {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: rRNA methyltransferase RlmA domain: rRNA methyltransferase RlmA species: Escherichia coli [TaxId: 562]
Probab=99.51 E-value=2.5e-14 Score=126.21 Aligned_cols=108 Identities=17% Similarity=0.210 Sum_probs=83.8
Q ss_pred HHHHHccccccCCCCCCEEEEEecCCCccHHHHHhhhCCCcEEEEEeCChHHHHHHHHHHHcC-CCeEEEEccCCCCccc
Q 021911 129 AAAVLGGVDNIWIKPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKR-TNVIPIIEDARHPAKY 207 (305)
Q Consensus 129 ~a~ll~~l~~~~~~~g~~VLDlG~G~G~~t~~la~~~~~~~~V~avD~s~~~~~~l~~~a~~~-~nI~~~~~D~~~~~~~ 207 (305)
...++..|....+.++.+|||+|||+|.++.++++.. +..+|++||+|+ .+++.++++ +++.++++|+.+.+.
T Consensus 70 ~~~~~~~l~~~~~~~~~~iLDiGcG~G~~~~~l~~~~-~~~~~~giD~s~----~~~~~a~~~~~~~~~~~~d~~~l~~- 143 (268)
T d1p91a_ 70 RDAIVAQLRERLDDKATAVLDIGCGEGYYTHAFADAL-PEITTFGLDVSK----VAIKAAAKRYPQVTFCVASSHRLPF- 143 (268)
T ss_dssp HHHHHHHHHHHSCTTCCEEEEETCTTSTTHHHHHHTC-TTSEEEEEESCH----HHHHHHHHHCTTSEEEECCTTSCSB-
T ss_pred HHHHHHHHHHhcCCCCCEEEEeCCCCcHHHHHHHHHC-CCCEEEEecchH----hhhhhhhcccccccceeeehhhccC-
Confidence 3333333333346678899999999999999999985 567999999999 666666654 799999999988753
Q ss_pred ccCCCcEeEEEEeCCChhHHHHHHHHHhccCCCCcEEEEEEc
Q 021911 208 RMLVGMVDVIFSDVAQPDQARILALNASYFLKAGGHFVISIK 249 (305)
Q Consensus 208 ~~~~~~fD~V~~d~~~~~~~~~l~~~a~~~LkpGG~lv~s~~ 249 (305)
.+++||+|++...... +. +++++|||||+|+++++
T Consensus 144 --~~~sfD~v~~~~~~~~----~~-e~~rvLkpgG~l~~~~p 178 (268)
T d1p91a_ 144 --SDTSMDAIIRIYAPCK----AE-ELARVVKPGGWVITATP 178 (268)
T ss_dssp --CTTCEEEEEEESCCCC----HH-HHHHHEEEEEEEEEEEE
T ss_pred --CCCCEEEEeecCCHHH----HH-HHHHHhCCCcEEEEEee
Confidence 3689999998665433 33 67789999999999984
|
| >d2avna1 c.66.1.41 (A:1-246) Hypothetical methyltransferase TM1389 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: UbiE/COQ5-like domain: Hypothetical methyltransferase TM1389 species: Thermotoga maritima [TaxId: 2336]
Probab=99.51 E-value=1.5e-14 Score=124.39 Aligned_cols=98 Identities=15% Similarity=0.228 Sum_probs=79.3
Q ss_pred CCCCCEEEEEecCCCccHHHHHhhhCCCcEEEEEeCChHHHHHHHHHHHcCCCeEEEEccCCCCcccccCCCcEeEEEEe
Q 021911 141 IKPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKRTNVIPIIEDARHPAKYRMLVGMVDVIFSD 220 (305)
Q Consensus 141 ~~~g~~VLDlG~G~G~~t~~la~~~~~~~~V~avD~s~~~~~~l~~~a~~~~nI~~~~~D~~~~~~~~~~~~~fD~V~~d 220 (305)
++++.+|||+|||+|.++..+++. ..+|++||+|+ .+++.++++....++++|+.+.+ ...++||+|++.
T Consensus 40 ~~~~~~vLDiGcG~G~~~~~l~~~---~~~v~giD~s~----~~l~~a~~~~~~~~~~~~~~~l~---~~~~~fD~ii~~ 109 (246)
T d2avna1 40 LKNPCRVLDLGGGTGKWSLFLQER---GFEVVLVDPSK----EMLEVAREKGVKNVVEAKAEDLP---FPSGAFEAVLAL 109 (246)
T ss_dssp CCSCCEEEEETCTTCHHHHHHHTT---TCEEEEEESCH----HHHHHHHHHTCSCEEECCTTSCC---SCTTCEEEEEEC
T ss_pred cCCCCEEEEECCCCchhccccccc---ceEEEEeeccc----ccccccccccccccccccccccc---cccccccceeee
Confidence 456789999999999999999987 24899999999 67777776644456788887764 235899999985
Q ss_pred CC----ChhHHHHHHHHHhccCCCCcEEEEEEc
Q 021911 221 VA----QPDQARILALNASYFLKAGGHFVISIK 249 (305)
Q Consensus 221 ~~----~~~~~~~l~~~a~~~LkpGG~lv~s~~ 249 (305)
.. .++..++|. ++.++|||||.|+++++
T Consensus 110 ~~~~~~~~d~~~~l~-~i~r~Lk~gG~~ii~~~ 141 (246)
T d2avna1 110 GDVLSYVENKDKAFS-EIRRVLVPDGLLIATVD 141 (246)
T ss_dssp SSHHHHCSCHHHHHH-HHHHHEEEEEEEEEEEE
T ss_pred cchhhhhhhHHHHHH-HHHhhcCcCcEEEEEEC
Confidence 43 567778887 99999999999999873
|
| >d1tw3a2 c.66.1.12 (A:99-351) Carminomycin 4-O-methyltransferase {Streptomyces peucetius [TaxId: 1950]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Plant O-methyltransferase, C-terminal domain domain: Carminomycin 4-O-methyltransferase species: Streptomyces peucetius [TaxId: 1950]
Probab=99.50 E-value=2.8e-13 Score=118.15 Aligned_cols=136 Identities=16% Similarity=0.139 Sum_probs=94.4
Q ss_pred CCCCCCEEEEEecCCCccHHHHHhhhCCCcEEEEEeCChHHHHHHHHHHHcC---CCeEEEEccCCCCcccccCCCcEeE
Q 021911 140 WIKPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKR---TNVIPIIEDARHPAKYRMLVGMVDV 216 (305)
Q Consensus 140 ~~~~g~~VLDlG~G~G~~t~~la~~~~~~~~V~avD~s~~~~~~l~~~a~~~---~nI~~~~~D~~~~~~~~~~~~~fD~ 216 (305)
+.....+|||||||+|.++..+++.+ |..+++++|+++ .+..+.+.+.+. .+|.++..|+.+.. +..||+
T Consensus 77 d~~~~~~VLDvGcG~G~~~~~la~~~-p~~~~~~~D~~~-~~~~a~~~~~~~~~~~rv~~~~~D~~~~~-----~~~~D~ 149 (253)
T d1tw3a2 77 DWTNVRHVLDVGGGKGGFAAAIARRA-PHVSATVLEMAG-TVDTARSYLKDEGLSDRVDVVEGDFFEPL-----PRKADA 149 (253)
T ss_dssp CCTTCSEEEEETCTTSHHHHHHHHHC-TTCEEEEEECTT-HHHHHHHHHHHTTCTTTEEEEECCTTSCC-----SSCEEE
T ss_pred CCccCCEEEEeCCCCCHHHHHHHHhc-ceeEEEEccCHH-HHHHHHHHHHHhhcccchhhccccchhhc-----ccchhh
Confidence 56667899999999999999999986 678999999853 444444444433 68999999987543 357999
Q ss_pred EEEeCC---C--hhHHHHHHHHHhccCCCCcEEEEEEcccccCCCCchhh-hH--------------HHH-HHHHHHCCC
Q 021911 217 IFSDVA---Q--PDQARILALNASYFLKAGGHFVISIKANCIDSTVPAEA-VF--------------QSE-VKKLQQDQF 275 (305)
Q Consensus 217 V~~d~~---~--~~~~~~l~~~a~~~LkpGG~lv~s~~~~~i~~~~~~~~-v~--------------~~~-~~~l~~~Gf 275 (305)
|++... . ++..++|. ++++.|||||+|++.......+....... .+ .++ .+.++++||
T Consensus 150 v~~~~vlh~~~d~~~~~~L~-~~~~~LkPGG~l~i~e~~~~~~~~~~~~~~~~dl~~~~~~~g~~rt~~e~~~ll~~AGf 228 (253)
T d1tw3a2 150 IILSFVLLNWPDHDAVRILT-RCAEALEPGGRILIHERDDLHENSFNEQFTELDLRMLVFLGGALRTREKWDGLAASAGL 228 (253)
T ss_dssp EEEESCGGGSCHHHHHHHHH-HHHHTEEEEEEEEEEECCBCGGGCCSHHHHHHHHHHHHHHSCCCCBHHHHHHHHHHTTE
T ss_pred eeeccccccCCchhhHHHHH-HHHHhcCCCcEEEEEeccCCCCCcchhHHHHhhHHHHhhCCCcCCCHHHHHHHHHHCCC
Confidence 998655 2 33346676 99999999999999763211111111111 00 122 345689999
Q ss_pred cEeEEeec
Q 021911 276 KPFEQVTL 283 (305)
Q Consensus 276 ~~~e~~~l 283 (305)
+++++..+
T Consensus 229 ~~~~v~~~ 236 (253)
T d1tw3a2 229 VVEEVRQL 236 (253)
T ss_dssp EEEEEEEE
T ss_pred eEEEEEEC
Confidence 99887765
|
| >d2fcaa1 c.66.1.53 (A:10-213) tRNA (guanine-N(7)-)-methyltransferase TrmB {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: TrmB-like domain: tRNA (guanine-N(7)-)-methyltransferase TrmB species: Bacillus subtilis [TaxId: 1423]
Probab=99.50 E-value=6.3e-14 Score=118.74 Aligned_cols=103 Identities=17% Similarity=0.175 Sum_probs=85.9
Q ss_pred CCCEEEEEecCCCccHHHHHhhhCCCcEEEEEeCChHHHHHHHHHHHcC--CCeEEEEccCCCCcccccCCCcEeEEEEe
Q 021911 143 PGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKR--TNVIPIIEDARHPAKYRMLVGMVDVIFSD 220 (305)
Q Consensus 143 ~g~~VLDlG~G~G~~t~~la~~~~~~~~V~avD~s~~~~~~l~~~a~~~--~nI~~~~~D~~~~~~~~~~~~~fD~V~~d 220 (305)
+.-.|||||||+|.++.++|... |+..+++||+++..+..+.+.+++. +||.++++|+...... ..+.++|.|++.
T Consensus 29 ~~PlvLeIGcG~G~~~~~lA~~~-p~~~~iGiD~~~~~i~~a~~~~~~~~l~Nv~~~~~Da~~l~~~-~~~~~~d~v~i~ 106 (204)
T d2fcaa1 29 DNPIHIEVGTGKGQFISGMAKQN-PDINYIGIELFKSVIVTAVQKVKDSEAQNVKLLNIDADTLTDV-FEPGEVKRVYLN 106 (204)
T ss_dssp CCCEEEEECCTTSHHHHHHHHHC-TTSEEEEECSCHHHHHHHHHHHHHSCCSSEEEECCCGGGHHHH-CCTTSCCEEEEE
T ss_pred CCceEEEEEecCcHHHHHHHHhC-CCCcEEEeecchHHHHHHHHHHHHHhccCchhcccchhhhhcc-cCchhhhccccc
Confidence 45589999999999999999984 7889999999998888888777665 7999999999876532 456799999998
Q ss_pred CCChh-----------HHHHHHHHHhccCCCCcEEEEEE
Q 021911 221 VAQPD-----------QARILALNASYFLKAGGHFVISI 248 (305)
Q Consensus 221 ~~~~~-----------~~~~l~~~a~~~LkpGG~lv~s~ 248 (305)
.|.|. +...+. .++++|||||.|++.|
T Consensus 107 fp~P~~k~~h~k~Rl~~~~~l~-~~~r~LkpgG~l~i~T 144 (204)
T d2fcaa1 107 FSDPWPKKRHEKRRLTYSHFLK-KYEEVMGKGGSIHFKT 144 (204)
T ss_dssp SCCCCCSGGGGGGSTTSHHHHH-HHHHHHTTSCEEEEEE
T ss_pred cccccchhhhcchhhhHHHHHH-HHHHhCCCCcEEEEEE
Confidence 77542 245666 8999999999999987
|
| >d1y8ca_ c.66.1.43 (A:) Putative methyltransferase CAC2371 {Clostridium acetobutylicum [TaxId: 1488]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: CAC2371-like domain: Putative methyltransferase CAC2371 species: Clostridium acetobutylicum [TaxId: 1488]
Probab=99.49 E-value=6.7e-14 Score=121.28 Aligned_cols=99 Identities=18% Similarity=0.201 Sum_probs=75.6
Q ss_pred CCCCEEEEEecCCCccHHHHHhhhCCCcEEEEEeCChHHHHHHHHHHHcC-CCeEEEEccCCCCcccccCCCcEeEEEEe
Q 021911 142 KPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKR-TNVIPIIEDARHPAKYRMLVGMVDVIFSD 220 (305)
Q Consensus 142 ~~g~~VLDlG~G~G~~t~~la~~~~~~~~V~avD~s~~~~~~l~~~a~~~-~nI~~~~~D~~~~~~~~~~~~~fD~V~~d 220 (305)
.++.+|||+|||+|..+..+++.. .+|++||+|+.+++.+.+.++.. .++.++++|+.++. +..+||+|+|-
T Consensus 36 ~~~~~vLDiGCG~G~~~~~l~~~g---~~v~GvD~S~~ml~~A~~~~~~~~~~v~~~~~d~~~~~----~~~~fD~i~~~ 108 (246)
T d1y8ca_ 36 LVFDDYLDLACGTGNLTENLCPKF---KNTWAVDLSQEMLSEAENKFRSQGLKPRLACQDISNLN----INRKFDLITCC 108 (246)
T ss_dssp CCTTEEEEETCTTSTTHHHHGGGS---SEEEEECSCHHHHHHHHHHHHHTTCCCEEECCCGGGCC----CSCCEEEEEEC
T ss_pred CCCCeEEEEeCcCCHHHHHHHHhC---CccEeeccchhhhhhccccccccCccceeeccchhhhc----cccccccccee
Confidence 345799999999999999999873 38999999995555544444333 58999999998764 24689999983
Q ss_pred CC------Ch-hHHHHHHHHHhccCCCCcEEEEEE
Q 021911 221 VA------QP-DQARILALNASYFLKAGGHFVISI 248 (305)
Q Consensus 221 ~~------~~-~~~~~l~~~a~~~LkpGG~lv~s~ 248 (305)
.. .+ +...++. +++++|||||.|++.+
T Consensus 109 ~~~~~~~~~~~~~~~~l~-~~~~~LkpgG~~i~~~ 142 (246)
T d1y8ca_ 109 LDSTNYIIDSDDLKKYFK-AVSNHLKEGGVFIFDI 142 (246)
T ss_dssp TTGGGGCCSHHHHHHHHH-HHHTTEEEEEEEEEEE
T ss_pred eeeeeccCCHHHHHHHHH-HHHHhCCCCeEEEEEe
Confidence 22 33 4445565 9999999999999764
|
| >d2gh1a1 c.66.1.49 (A:13-293) Methyltransferase BC2162 {Bacillus cereus [TaxId: 1396]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: BC2162-like domain: Methyltransferase BC2162 species: Bacillus cereus [TaxId: 1396]
Probab=99.48 E-value=7.3e-14 Score=123.93 Aligned_cols=105 Identities=10% Similarity=0.026 Sum_probs=84.7
Q ss_pred CCCCCCEEEEEecCCCccHHHHHhhhCCCcEEEEEeCChHHHHHHHHHHHcC-CCeEEEEccCCCCcccccCCCcEeEEE
Q 021911 140 WIKPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKR-TNVIPIIEDARHPAKYRMLVGMVDVIF 218 (305)
Q Consensus 140 ~~~~g~~VLDlG~G~G~~t~~la~~~~~~~~V~avD~s~~~~~~l~~~a~~~-~nI~~~~~D~~~~~~~~~~~~~fD~V~ 218 (305)
.+....+|||+|||+|.++..+++.+....+|+++|+|+.++..+.+.++.. .++.+++.|+.+.+. .++||+|+
T Consensus 24 ~~~~~~~ILDiGcG~G~~~~~la~~~~~~~~v~giD~s~~~l~~a~~~~~~~~~~~~f~~~d~~~~~~----~~~fD~v~ 99 (281)
T d2gh1a1 24 KITKPVHIVDYGCGYGYLGLVLMPLLPEGSKYTGIDSGETLLAEARELFRLLPYDSEFLEGDATEIEL----NDKYDIAI 99 (281)
T ss_dssp CCCSCCEEEEETCTTTHHHHHHTTTSCTTCEEEEEECCHHHHHHHHHHHHSSSSEEEEEESCTTTCCC----SSCEEEEE
T ss_pred ccCCcCEEEEecCcCCHHHHHHHHhCCCCCEEEEEecchhHhhhhhcccccccccccccccccccccc----cCCceEEE
Confidence 3556689999999999999999998765679999999996555555554443 478999999987642 36899999
Q ss_pred EeCC---ChhHHHHHHHHHhccCCCCcEEEEEEc
Q 021911 219 SDVA---QPDQARILALNASYFLKAGGHFVISIK 249 (305)
Q Consensus 219 ~d~~---~~~~~~~l~~~a~~~LkpGG~lv~s~~ 249 (305)
+... .++...++. ++.++|||||.|++.++
T Consensus 100 ~~~~l~~~~d~~~~l~-~~~~~LkpgG~lii~~~ 132 (281)
T d2gh1a1 100 CHAFLLHMTTPETMLQ-KMIHSVKKGGKIICFEP 132 (281)
T ss_dssp EESCGGGCSSHHHHHH-HHHHTEEEEEEEEEEEC
T ss_pred EehhhhcCCCHHHHHH-HHHHHcCcCcEEEEEEC
Confidence 9776 457777887 99999999999999873
|
| >d1yzha1 c.66.1.53 (A:8-211) tRNA (guanine-N(7)-)-methyltransferase TrmB {Streptococcus pneumoniae [TaxId: 1313]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: TrmB-like domain: tRNA (guanine-N(7)-)-methyltransferase TrmB species: Streptococcus pneumoniae [TaxId: 1313]
Probab=99.48 E-value=2.8e-13 Score=114.67 Aligned_cols=124 Identities=14% Similarity=0.176 Sum_probs=95.8
Q ss_pred CCCEEEEEecCCCccHHHHHhhhCCCcEEEEEeCChHHHHHHHHHHHcC--CCeEEEEccCCCCcccccCCCcEeEEEEe
Q 021911 143 PGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKR--TNVIPIIEDARHPAKYRMLVGMVDVIFSD 220 (305)
Q Consensus 143 ~g~~VLDlG~G~G~~t~~la~~~~~~~~V~avD~s~~~~~~l~~~a~~~--~nI~~~~~D~~~~~~~~~~~~~fD~V~~d 220 (305)
..-.|||||||+|.++.++|... |+..+++||+++..+..+++.+++. +||.++..|+...... +...++|.|++.
T Consensus 31 ~~plvLdIGcG~G~~~~~lA~~~-p~~~~iGid~~~~~v~~a~~~~~~~~l~Ni~~~~~da~~l~~~-~~~~~~~~i~i~ 108 (204)
T d1yzha1 31 DNPIHVEVGSGKGAFVSGMAKQN-PDINYIGIDIQKSVLSYALDKVLEVGVPNIKLLWVDGSDLTDY-FEDGEIDRLYLN 108 (204)
T ss_dssp CCCEEEEESCTTSHHHHHHHHHC-TTSEEEEEESCHHHHHHHHHHHHHHCCSSEEEEECCSSCGGGT-SCTTCCSEEEEE
T ss_pred CCCeEEEEeccCCHHHHHHHHHC-CCCceEEEeccHHHHHHHHHhhhhhccccceeeecCHHHHhhh-ccCCceehhccc
Confidence 34589999999999999999985 7889999999998877777766654 7999999999887543 456799999998
Q ss_pred CCChh-----------HHHHHHHHHhccCCCCcEEEEEEcccccCCCCchhhhHHHHHHHHHHCCCcEe
Q 021911 221 VAQPD-----------QARILALNASYFLKAGGHFVISIKANCIDSTVPAEAVFQSEVKKLQQDQFKPF 278 (305)
Q Consensus 221 ~~~~~-----------~~~~l~~~a~~~LkpGG~lv~s~~~~~i~~~~~~~~v~~~~~~~l~~~Gf~~~ 278 (305)
.|.|+ +...|. .++++|||||.|++.| +...++...++.+.+.++...
T Consensus 109 fPdPw~K~~h~krRl~~~~~l~-~~~~~LkpgG~l~i~T---------D~~~Y~~~~le~~~~~~~~~~ 167 (204)
T d1yzha1 109 FSDPWPKKRHEKRRLTYKTFLD-TFKRILPENGEIHFKT---------DNRGLFEYSLVSFSQYGMKLN 167 (204)
T ss_dssp SCCCCCSGGGGGGSTTSHHHHH-HHHHHSCTTCEEEEEE---------SCHHHHHHHHHHHHHHTCEEE
T ss_pred ccccccchhhhhhhhhHHHHHH-HHHHhCCCCcEEEEEE---------CCccHHHHHHHHHHHCCcccc
Confidence 88653 355666 8999999999999988 223344444455555566544
|
| >d1zx0a1 c.66.1.16 (A:8-236) Guanidinoacetate methyltransferase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Guanidinoacetate methyltransferase domain: Guanidinoacetate methyltransferase species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.48 E-value=4.4e-14 Score=121.67 Aligned_cols=135 Identities=21% Similarity=0.216 Sum_probs=90.6
Q ss_pred CCCCCEEEEEecCCCccHHHHHhhhCCCcEEEEEeCChHHHHHHHHHHHcC-CCeEEEEccCCCCcccccCCCcEeEEEE
Q 021911 141 IKPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKR-TNVIPIIEDARHPAKYRMLVGMVDVIFS 219 (305)
Q Consensus 141 ~~~g~~VLDlG~G~G~~t~~la~~~~~~~~V~avD~s~~~~~~l~~~a~~~-~nI~~~~~D~~~~~~~~~~~~~fD~V~~ 219 (305)
..++.+|||||||+|..+..+++.. ..+|++||+|+..++.+.+.++.. .++..+..|+...... ....+||.|+.
T Consensus 51 ~~~g~~VLdIGcG~G~~a~~~a~~~--~~~v~~id~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~fD~i~f 127 (229)
T d1zx0a1 51 SSKGGRVLEVGFGMAIAASKVQEAP--IDEHWIIECNDGVFQRLRDWAPRQTHKVIPLKGLWEDVAPT-LPDGHFDGILY 127 (229)
T ss_dssp TTTCEEEEEECCTTSHHHHHHHTSC--EEEEEEEECCHHHHHHHHHHGGGCSSEEEEEESCHHHHGGG-SCTTCEEEEEE
T ss_pred ccCCCeEEEeeccchHHHHHHHHcC--CCeEEEeCCCHHHHHHHHHHhhhcccccccccccccccccc-cccccccceee
Confidence 4678999999999999999999862 358999999996655555555443 4677777776543221 23579999998
Q ss_pred eCC--------ChhHHHHHHHHHhccCCCCcEEEEEEcccc---cCCC-CchhhhHHHH-HHHHHHCCCcEeE
Q 021911 220 DVA--------QPDQARILALNASYFLKAGGHFVISIKANC---IDST-VPAEAVFQSE-VKKLQQDQFKPFE 279 (305)
Q Consensus 220 d~~--------~~~~~~~l~~~a~~~LkpGG~lv~s~~~~~---i~~~-~~~~~v~~~~-~~~l~~~Gf~~~e 279 (305)
|.. .++....+. +++++|||||+|++...... .... ......+... ...|.+.||+..+
T Consensus 128 D~~~~~~~~~~~~~~~~~~~-~~~r~LkpGG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~agF~~~~ 199 (229)
T d1zx0a1 128 DTYPLSEETWHTHQFNFIKN-HAFRLLKPGGVLTYCNLTSWGELMKSKYSDITIMFEETQVPALLEAGFRREN 199 (229)
T ss_dssp CCCCCBGGGTTTHHHHHHHH-THHHHEEEEEEEEECCHHHHHHHTTTTCSCHHHHHHHHTHHHHHHTTCCGGG
T ss_pred cccccccccccccCHHHHHH-HHHHHcCCCcEEEEEecCCcchhhhhhhhhcchhhhhHHHHHHHHCCCeeEE
Confidence 776 245666776 99999999999988541110 1111 1112233322 4566788997544
|
| >d1ri5a_ c.66.1.34 (A:) mRNA cap (Guanine N-7) methyltransferase {Fungus (Encephalitozoon cuniculi) [TaxId: 6035]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: mRNA cap (Guanine N-7) methyltransferase domain: mRNA cap (Guanine N-7) methyltransferase species: Fungus (Encephalitozoon cuniculi) [TaxId: 6035]
Probab=99.47 E-value=1.7e-13 Score=119.35 Aligned_cols=104 Identities=24% Similarity=0.258 Sum_probs=79.0
Q ss_pred CCCCCCEEEEEecCCCccHHHHHhhhCCCcEEEEEeCChHHHHHHHHHHHcC---CCeEEEEccCCCCcccccCCCcEeE
Q 021911 140 WIKPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKR---TNVIPIIEDARHPAKYRMLVGMVDV 216 (305)
Q Consensus 140 ~~~~g~~VLDlG~G~G~~t~~la~~~~~~~~V~avD~s~~~~~~l~~~a~~~---~nI~~~~~D~~~~~~~~~~~~~fD~ 216 (305)
..+++.+|||||||+|..+..+++. ...+|+|||+|+.++..+.+.++.. .++.++++|+...... ...+||+
T Consensus 21 ~~~~~~~VLDlGCG~G~~~~~~~~~--~~~~v~GiD~S~~~l~~A~~r~~~~~~~~~v~f~~~D~~~~~~~--~~~~fD~ 96 (252)
T d1ri5a_ 21 YTKRGDSVLDLGCGKGGDLLKYERA--GIGEYYGVDIAEVSINDARVRARNMKRRFKVFFRAQDSYGRHMD--LGKEFDV 96 (252)
T ss_dssp HCCTTCEEEEETCTTTTTHHHHHHH--TCSEEEEEESCHHHHHHHHHHHHTSCCSSEEEEEESCTTTSCCC--CSSCEEE
T ss_pred hCCCcCEEEEecccCcHHHHHHHHc--CCCeEEEecCCHHHHHHHHHHHHhcCCCcceEEEEcchhhhccc--ccccceE
Confidence 4678899999999999999999886 3458999999996655555444432 4799999998655321 2468999
Q ss_pred EEEeCCC------h-hHHHHHHHHHhccCCCCcEEEEEE
Q 021911 217 IFSDVAQ------P-DQARILALNASYFLKAGGHFVISI 248 (305)
Q Consensus 217 V~~d~~~------~-~~~~~l~~~a~~~LkpGG~lv~s~ 248 (305)
|+|.... . +...++. ++.++|||||+|++++
T Consensus 97 V~~~~~l~~~~~~~~~~~~~l~-~i~~~Lk~gG~~i~~~ 134 (252)
T d1ri5a_ 97 ISSQFSFHYAFSTSESLDIAQR-NIARHLRPGGYFIMTV 134 (252)
T ss_dssp EEEESCGGGGGSSHHHHHHHHH-HHHHTEEEEEEEEEEE
T ss_pred EEEcceeeecCCCHHHHHHHHH-HHhceeCCCCEEEEEe
Confidence 9997651 1 2345555 9999999999999876
|
| >d1wxxa2 c.66.1.51 (A:65-382) Hypothetical protein TTHA1280, middle and C-terminal domains {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: hypothetical RNA methyltransferase domain: Hypothetical protein TTHA1280, middle and C-terminal domains species: Thermus thermophilus [TaxId: 274]
Probab=99.45 E-value=9.3e-14 Score=125.48 Aligned_cols=103 Identities=20% Similarity=0.095 Sum_probs=83.7
Q ss_pred CCCCEEEEEecCCCccHHHHHhhhCCCcEEEEEeCChHHHHHHHHHHHcC--CCeEEEEccCCCCccc-ccCCCcEeEEE
Q 021911 142 KPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKR--TNVIPIIEDARHPAKY-RMLVGMVDVIF 218 (305)
Q Consensus 142 ~~g~~VLDlG~G~G~~t~~la~~~~~~~~V~avD~s~~~~~~l~~~a~~~--~nI~~~~~D~~~~~~~-~~~~~~fD~V~ 218 (305)
..+.+|||+|||+|.++.++|.. ..+|++||+|+.+++.+.++++.+ .++++++.|+.+.... .....+||+|+
T Consensus 144 ~~g~rVLDl~~gtG~~s~~~a~g---~~~V~~vD~s~~al~~a~~n~~~ngl~~~~~i~~d~~~~~~~~~~~~~~fD~Vi 220 (318)
T d1wxxa2 144 FRGERALDVFSYAGGFALHLALG---FREVVAVDSSAEALRRAEENARLNGLGNVRVLEANAFDLLRRLEKEGERFDLVV 220 (318)
T ss_dssp CCEEEEEEETCTTTHHHHHHHHH---EEEEEEEESCHHHHHHHHHHHHHTTCTTEEEEESCHHHHHHHHHHTTCCEEEEE
T ss_pred hCCCeeeccCCCCcHHHHHHHhc---CCcEEeecchHHHHHHHHHHHHHcCCCCcceeeccHHHHhhhhHhhhcCCCEEE
Confidence 46899999999999999998864 358999999998888877777765 6899999998765332 12346899999
Q ss_pred EeCCC------------hhHHHHHHHHHhccCCCCcEEEEEE
Q 021911 219 SDVAQ------------PDQARILALNASYFLKAGGHFVISI 248 (305)
Q Consensus 219 ~d~~~------------~~~~~~l~~~a~~~LkpGG~lv~s~ 248 (305)
+|+|+ .++.+++. .+.++|||||.|++++
T Consensus 221 ~DpP~~~~~~~~~~~~~~~~~~l~~-~a~~lLkpGG~Lv~~s 261 (318)
T d1wxxa2 221 LDPPAFAKGKKDVERAYRAYKEVNL-RAIKLLKEGGILATAS 261 (318)
T ss_dssp ECCCCSCCSTTSHHHHHHHHHHHHH-HHHHTEEEEEEEEEEE
T ss_pred EcCCccccchHHHHHHHHHHHHHHH-HHHHHcCCCCEEEEEe
Confidence 99993 24556776 8999999999999998
|
| >d1vbfa_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Sulfolobus tokodaii [TaxId: 111955]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Protein-L-isoaspartyl O-methyltransferase domain: Protein-L-isoaspartyl O-methyltransferase species: Sulfolobus tokodaii [TaxId: 111955]
Probab=99.45 E-value=1.3e-13 Score=118.36 Aligned_cols=109 Identities=20% Similarity=0.230 Sum_probs=82.9
Q ss_pred HHHHHHHccccccCCCCCCEEEEEecCCCccHHHHHhhhCCCcEEEEEeCChHHHHHHHHHHHcCCCeEEEEccCCCCcc
Q 021911 127 KLAAAVLGGVDNIWIKPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKRTNVIPIIEDARHPAK 206 (305)
Q Consensus 127 ~l~a~ll~~l~~~~~~~g~~VLDlG~G~G~~t~~la~~~~~~~~V~avD~s~~~~~~l~~~a~~~~nI~~~~~D~~~~~~ 206 (305)
.+.+.+++.| .++++++|||+|||+|+.|..||.++ ++|+++|+++.....+.+...+..|+.+++.|.....+
T Consensus 57 ~~~a~ml~~L---~l~~g~~VLdIG~GsGy~ta~La~l~---~~V~aiE~~~~~~~~A~~~~~~~~nv~~~~~d~~~g~~ 130 (224)
T d1vbfa_ 57 NLGIFMLDEL---DLHKGQKVLEIGTGIGYYTALIAEIV---DKVVSVEINEKMYNYASKLLSYYNNIKLILGDGTLGYE 130 (224)
T ss_dssp HHHHHHHHHT---TCCTTCEEEEECCTTSHHHHHHHHHS---SEEEEEESCHHHHHHHHHHHTTCSSEEEEESCGGGCCG
T ss_pred hhHHHHHHHh---hhcccceEEEecCCCCHHHHHHHHHh---cccccccccHHHHHHHHHHHhcccccccccCchhhcch
Confidence 4455555433 68999999999999999999999985 48999999996666555555555899999999865433
Q ss_pred cccCCCcEeEEEEeCCChhHHHHHHHHHhccCCCCcEEEEEE
Q 021911 207 YRMLVGMVDVIFSDVAQPDQARILALNASYFLKAGGHFVISI 248 (305)
Q Consensus 207 ~~~~~~~fD~V~~d~~~~~~~~~l~~~a~~~LkpGG~lv~s~ 248 (305)
. ..+||+|++..+.+.... ...+.|||||+|++..
T Consensus 131 ~---~~pfD~Iiv~~a~~~ip~----~l~~qLk~GGrLV~pv 165 (224)
T d1vbfa_ 131 E---EKPYDRVVVWATAPTLLC----KPYEQLKEGGIMILPI 165 (224)
T ss_dssp G---GCCEEEEEESSBBSSCCH----HHHHTEEEEEEEEEEE
T ss_pred h---hhhHHHHHhhcchhhhhH----HHHHhcCCCCEEEEEE
Confidence 2 368999999877544332 3336899999999865
|
| >d2as0a2 c.66.1.51 (A:73-396) Hypothetical protein PH1915, middle and C-terminal domains {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: hypothetical RNA methyltransferase domain: Hypothetical protein PH1915, middle and C-terminal domains species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=99.45 E-value=1.3e-13 Score=124.78 Aligned_cols=106 Identities=20% Similarity=0.189 Sum_probs=85.2
Q ss_pred CCCCCCEEEEEecCCCccHHHHHhhhCCCcEEEEEeCChHHHHHHHHHHHcC---CCeEEEEccCCCCccc-ccCCCcEe
Q 021911 140 WIKPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKR---TNVIPIIEDARHPAKY-RMLVGMVD 215 (305)
Q Consensus 140 ~~~~g~~VLDlG~G~G~~t~~la~~~~~~~~V~avD~s~~~~~~l~~~a~~~---~nI~~~~~D~~~~~~~-~~~~~~fD 215 (305)
.++++++|||+|||+|.++.++|.. ...+|++||+|+.++..+.++++.+ .++++++.|+.+.... .....+||
T Consensus 142 ~~~~g~~VLDl~~g~G~~si~~a~~--ga~~V~~vD~s~~al~~a~~N~~~ngl~~~~~~~~~d~~~~~~~~~~~~~~fD 219 (324)
T d2as0a2 142 WVQPGDRVLDVFTYTGGFAIHAAIA--GADEVIGIDKSPRAIETAKENAKLNGVEDRMKFIVGSAFEEMEKLQKKGEKFD 219 (324)
T ss_dssp GCCTTCEEEETTCTTTHHHHHHHHT--TCSEEEEEESCHHHHHHHHHHHHHTTCGGGEEEEESCHHHHHHHHHHTTCCEE
T ss_pred hcCCCCeeecccCcccchhhhhhhc--CCcEEEeecCCHHHHHHHHHHHHHcCCCccceeeechhhhhhHHHHhccCCCC
Confidence 3678999999999999999999876 3458999999998877777777665 5789999998664321 11246899
Q ss_pred EEEEeCCCh------------hHHHHHHHHHhccCCCCcEEEEEE
Q 021911 216 VIFSDVAQP------------DQARILALNASYFLKAGGHFVISI 248 (305)
Q Consensus 216 ~V~~d~~~~------------~~~~~l~~~a~~~LkpGG~lv~s~ 248 (305)
+|++|+|+. ++.+++. .+.++|||||+|++++
T Consensus 220 ~Vi~DpP~~~~~~~~~~~~~~~y~~l~~-~a~~ll~pGG~lv~~s 263 (324)
T d2as0a2 220 IVVLDPPAFVQHEKDLKAGLRAYFNVNF-AGLNLVKDGGILVTCS 263 (324)
T ss_dssp EEEECCCCSCSSGGGHHHHHHHHHHHHH-HHHTTEEEEEEEEEEE
T ss_pred chhcCCccccCCHHHHHHHHHHHHHHHH-HHHHHcCCCcEEEEEe
Confidence 999999942 3556666 8999999999999998
|
| >d2b78a2 c.66.1.51 (A:69-385) Hypothetical protein SMu776, middle and C-terminal domains {Streptococcus mutans [TaxId: 1309]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: hypothetical RNA methyltransferase domain: Hypothetical protein SMu776, middle and C-terminal domains species: Streptococcus mutans [TaxId: 1309]
Probab=99.45 E-value=3.7e-13 Score=121.31 Aligned_cols=134 Identities=17% Similarity=0.148 Sum_probs=96.5
Q ss_pred CCCCCCEEEEEecCCCccHHHHHhhhCCCcEEEEEeCChHHHHHHHHHHHcC----CCeEEEEccCCCCccc-ccCCCcE
Q 021911 140 WIKPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKR----TNVIPIIEDARHPAKY-RMLVGMV 214 (305)
Q Consensus 140 ~~~~g~~VLDlG~G~G~~t~~la~~~~~~~~V~avD~s~~~~~~l~~~a~~~----~nI~~~~~D~~~~~~~-~~~~~~f 214 (305)
...++.+|||++|++|.++++++.. ....|++||+|+.++..+.++++.+ .++++++.|+.+.... .....+|
T Consensus 141 ~~~~g~~VLdlf~~~G~~sl~aa~~--ga~~V~~vD~s~~a~~~a~~N~~~n~l~~~~~~~i~~d~~~~l~~~~~~~~~f 218 (317)
T d2b78a2 141 GSAAGKTVLNLFSYTAAFSVAAAMG--GAMATTSVDLAKRSRALSLAHFEANHLDMANHQLVVMDVFDYFKYARRHHLTY 218 (317)
T ss_dssp TTTBTCEEEEETCTTTHHHHHHHHT--TBSEEEEEESCTTHHHHHHHHHHHTTCCCTTEEEEESCHHHHHHHHHHTTCCE
T ss_pred HhhCCCceeecCCCCcHHHHHHHhC--CCceEEEecCCHHHHHHHHHHHHHhcccCcceEEEEccHHHHHHHHHhhcCCC
Confidence 3567899999999999999988764 4458999999998888777777655 4799999999765332 1124689
Q ss_pred eEEEEeCCC------------hhHHHHHHHHHhccCCCCcEEEEEEcccccCCCCchhhhHHHHH-HHHHHCCCcEeEEe
Q 021911 215 DVIFSDVAQ------------PDQARILALNASYFLKAGGHFVISIKANCIDSTVPAEAVFQSEV-KKLQQDQFKPFEQV 281 (305)
Q Consensus 215 D~V~~d~~~------------~~~~~~l~~~a~~~LkpGG~lv~s~~~~~i~~~~~~~~v~~~~~-~~l~~~Gf~~~e~~ 281 (305)
|+|++|+|. .++.+++. .+.++|+|||.|++++ |+...+ ...|...+ +.+...+.++..+.
T Consensus 219 D~Ii~DPP~f~~~~~~~~~~~~~~~~L~~-~a~~ll~pgG~l~~~s--cs~~~~---~~~f~~~v~~a~~~~~~~~~~~~ 292 (317)
T d2b78a2 219 DIIIIDPPSFARNKKEVFSVSKDYHKLIR-QGLEILSENGLIIAST--NAANMT---VSQFKKQIEKGFGKQKHTYLDLQ 292 (317)
T ss_dssp EEEEECCCCC-----CCCCHHHHHHHHHH-HHHHTEEEEEEEEEEE--CCTTSC---HHHHHHHHHHHHTTCCCEEEEEE
T ss_pred CEEEEcChhhccchhHHHHHHHHHHHHHH-HHHHHcCCCCEEEEEe--CCccCC---HHHHHHHHHHHHHHcCCeEEEec
Confidence 999999993 24566776 8999999999999998 432222 22333443 33455666665543
|
| >d2p7ia1 c.66.1.41 (A:22-246) Hypothetical protein ECA1738 {Erwinia carotovora [TaxId: 554]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: UbiE/COQ5-like domain: Hypothetical protein ECA1738 species: Erwinia carotovora [TaxId: 554]
Probab=99.43 E-value=2.4e-13 Score=116.42 Aligned_cols=95 Identities=20% Similarity=0.242 Sum_probs=76.9
Q ss_pred CCCEEEEEecCCCccHHHHHhhhCCCcEEEEEeCChHHHHHHHHHHHcC--CCeEEEEccCCCCcccccCCCcEeEEEEe
Q 021911 143 PGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKR--TNVIPIIEDARHPAKYRMLVGMVDVIFSD 220 (305)
Q Consensus 143 ~g~~VLDlG~G~G~~t~~la~~~~~~~~V~avD~s~~~~~~l~~~a~~~--~nI~~~~~D~~~~~~~~~~~~~fD~V~~d 220 (305)
.+.+|||||||+|.++..+++.. .+|++||+|+ ++++.++++ .++.+++.|+.+.. ++.+||+|++.
T Consensus 20 ~~~~VLDiGcG~G~~~~~l~~~g---~~v~giD~s~----~~i~~a~~~~~~~~~~~~~~~~~~~----~~~~fD~I~~~ 88 (225)
T d2p7ia1 20 RPGNLLELGSFKGDFTSRLQEHF---NDITCVEASE----EAISHAQGRLKDGITYIHSRFEDAQ----LPRRYDNIVLT 88 (225)
T ss_dssp CSSCEEEESCTTSHHHHHHTTTC---SCEEEEESCH----HHHHHHHHHSCSCEEEEESCGGGCC----CSSCEEEEEEE
T ss_pred CCCcEEEEeCCCcHHHHHHHHcC---CeEEEEeCcH----HHhhhhhcccccccccccccccccc----ccccccccccc
Confidence 45689999999999999998763 3799999999 666666544 58999999987654 24799999986
Q ss_pred CC---ChhHHHHHHHHHh-ccCCCCcEEEEEEc
Q 021911 221 VA---QPDQARILALNAS-YFLKAGGHFVISIK 249 (305)
Q Consensus 221 ~~---~~~~~~~l~~~a~-~~LkpGG~lv~s~~ 249 (305)
.. .+++..++. ++. ++|||||.|+++++
T Consensus 89 ~vleh~~d~~~~l~-~i~~~~Lk~gG~l~i~~p 120 (225)
T d2p7ia1 89 HVLEHIDDPVALLK-RINDDWLAEGGRLFLVCP 120 (225)
T ss_dssp SCGGGCSSHHHHHH-HHHHTTEEEEEEEEEEEE
T ss_pred ceeEecCCHHHHHH-HHHHHhcCCCceEEEEeC
Confidence 65 467777777 776 89999999999985
|
| >d2a14a1 c.66.1.15 (A:5-261) Indolethylamine N-methyltransferase, INMT {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Arylamine N-methyltransferase domain: Indolethylamine N-methyltransferase, INMT species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.41 E-value=8.9e-13 Score=114.28 Aligned_cols=156 Identities=15% Similarity=0.146 Sum_probs=93.3
Q ss_pred CCCCCEEEEEecCCCccHHHHHhhhCCCcEEEEEeCChHHHHHHHHHHHcCC-C--------------------------
Q 021911 141 IKPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKRT-N-------------------------- 193 (305)
Q Consensus 141 ~~~g~~VLDlG~G~G~~t~~la~~~~~~~~V~avD~s~~~~~~l~~~a~~~~-n-------------------------- 193 (305)
..++.+|||||||+|..+..++.. ....|+++|+|+.++..+.+.+++.. .
T Consensus 49 ~~~g~~vLDlGcG~G~~~~~~~~~--~~~~v~giD~S~~~i~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 126 (257)
T d2a14a1 49 GLQGDTLIDIGSGPTIYQVLAACD--SFQDITLSDFTDRNREELEKWLKKEPGAYDWTPAVKFACELEGNSGRWEEKEEK 126 (257)
T ss_dssp SCCEEEEEESSCTTCCGGGTTGGG--TEEEEEEEESCHHHHHHHHHHHHTCTTCCCCHHHHHHHHHHTTCGGGHHHHHHH
T ss_pred CCCCCEEEEECCCCCHhHHHHhcc--ccCcEEEecCCHHHHHHHHHHHhhccccchhhhHHHHHHHhccccchHHHHHHH
Confidence 456789999999999998877765 22379999999976666655544321 0
Q ss_pred ----e-EEEEccCCCCc-ccccCCCcEeEEEEeCC------C-hhHHHHHHHHHhccCCCCcEEEEEEcccccCC---CC
Q 021911 194 ----V-IPIIEDARHPA-KYRMLVGMVDVIFSDVA------Q-PDQARILALNASYFLKAGGHFVISIKANCIDS---TV 257 (305)
Q Consensus 194 ----I-~~~~~D~~~~~-~~~~~~~~fD~V~~d~~------~-~~~~~~l~~~a~~~LkpGG~lv~s~~~~~i~~---~~ 257 (305)
+ .....+..... .......+||+|++... . .+....+. +++++|||||+|++++....... ..
T Consensus 127 ~~~~~~~~~~~~~~~~~~~~~~~~~~fD~i~~~~~l~~~~~~~~~~~~~l~-~i~~~LkpGG~li~~~~~~~~~~~~~~~ 205 (257)
T d2a14a1 127 LRAAVKRVLKCDVHLGNPLAPAVLPLADCVLTLLAMECACCSLDAYRAALC-NLASLLKPGGHLVTTVTLRLPSYMVGKR 205 (257)
T ss_dssp HHHHEEEEEECCTTSSSTTTTCCCCCEEEEEEESCHHHHCSSHHHHHHHHH-HHHTTEEEEEEEEEEEESSCCEEEETTE
T ss_pred HhhhhhcccccccccccccccccCCcccEEeehhhHHHhcccHHHHHHHHH-HHHhccCCCcEEEEEEecccccceeccc
Confidence 1 11122221111 11123568999998665 1 24455666 99999999999999874221000 00
Q ss_pred c--hhhh-HHHHHHHHHHCCCcEeEEeecC-------CCCCceEEEEEEEcC
Q 021911 258 P--AEAV-FQSEVKKLQQDQFKPFEQVTLE-------PFERDHACVVGGYRM 299 (305)
Q Consensus 258 ~--~~~v-~~~~~~~l~~~Gf~~~e~~~l~-------p~~~~~~~vv~~~~~ 299 (305)
. .... .....+.|+++||++++..... +-....++|+++|++
T Consensus 206 ~~~~~~~~~~~~~~~l~~aGf~v~~~~~~~~~~~~~~~~~~~~~~v~arKkp 257 (257)
T d2a14a1 206 EFSCVALEKGEVEQAVLDAGFDIEQLLHSPQSYSVTNAANNGVCCIVARKKP 257 (257)
T ss_dssp EEECCCCCHHHHHHHHHHTTEEEEEEEEECCCCCTTTCCCCCEEEEEEEECC
T ss_pred cccccCCCHHHHHHHHHHCCCEEEEEEEeccccccccCCCCcEEEEEEEeCc
Confidence 0 0001 1222466789999988764321 112345778888763
|
| >d1qzza2 c.66.1.12 (A:102-357) Aclacinomycin-10-hydroxylase RdmB {Streptomyces purpurascens [TaxId: 1924]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Plant O-methyltransferase, C-terminal domain domain: Aclacinomycin-10-hydroxylase RdmB species: Streptomyces purpurascens [TaxId: 1924]
Probab=99.39 E-value=3.3e-12 Score=111.58 Aligned_cols=139 Identities=16% Similarity=0.103 Sum_probs=93.9
Q ss_pred CCCCCCEEEEEecCCCccHHHHHhhhCCCcEEEEEeCChHHHHHHHHHHHcC---CCeEEEEccCCCCcccccCCCcEeE
Q 021911 140 WIKPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKR---TNVIPIIEDARHPAKYRMLVGMVDV 216 (305)
Q Consensus 140 ~~~~g~~VLDlG~G~G~~t~~la~~~~~~~~V~avD~s~~~~~~l~~~a~~~---~nI~~~~~D~~~~~~~~~~~~~fD~ 216 (305)
+.....+|||||||+|.++..+++.+ |..+++++|+ +..+....+.++.. .++.++..|+..+. +..||+
T Consensus 78 d~~~~~~vlDvG~G~G~~~~~l~~~~-P~~~~~~~Dl-p~~~~~a~~~~~~~~~~~ri~~~~~d~~~~~-----p~~~D~ 150 (256)
T d1qzza2 78 DWSAVRHVLDVGGGNGGMLAAIALRA-PHLRGTLVEL-AGPAERARRRFADAGLADRVTVAEGDFFKPL-----PVTADV 150 (256)
T ss_dssp CCTTCCEEEEETCTTSHHHHHHHHHC-TTCEEEEEEC-HHHHHHHHHHHHHTTCTTTEEEEECCTTSCC-----SCCEEE
T ss_pred CCccCCEEEEECCCCCHHHHHHHHhh-cCcEEEEecC-hHHHHHHHHHHhhcCCcceeeeeeeeccccc-----cccchh
Confidence 45667899999999999999999986 7789999998 54444444443332 67999999987642 357999
Q ss_pred EEEeCC---C--hhHHHHHHHHHhccCCCCcEEEEEEcccccCCCCchh-h-hH--------------HHH-HHHHHHCC
Q 021911 217 IFSDVA---Q--PDQARILALNASYFLKAGGHFVISIKANCIDSTVPAE-A-VF--------------QSE-VKKLQQDQ 274 (305)
Q Consensus 217 V~~d~~---~--~~~~~~l~~~a~~~LkpGG~lv~s~~~~~i~~~~~~~-~-v~--------------~~~-~~~l~~~G 274 (305)
|++... . ++..++|. ++++.|||||+|++.......+....+. . .+ .++ .+.++++|
T Consensus 151 v~~~~vLh~~~d~~~~~lL~-~i~~~LkpgG~llI~d~~~~~~~~~~~~~~~~~d~~ml~~~~g~~rt~~e~~~ll~~AG 229 (256)
T d1qzza2 151 VLLSFVLLNWSDEDALTILR-GCVRALEPGGRLLVLDRADVEGDGADRFFSTLLDLRMLTFMGGRVRTRDEVVDLAGSAG 229 (256)
T ss_dssp EEEESCGGGSCHHHHHHHHH-HHHHHEEEEEEEEEEECCH-------HHHHHHHHHHHHHHHSCCCCCHHHHHHHHHTTT
T ss_pred hhccccccccCcHHHHHHHH-HHHhhcCCcceeEEEEeccCCCCcccHHHHHHHHHHHHhhCCCccCCHHHHHHHHHHCC
Confidence 998554 2 23445666 9999999999999986321111111111 1 10 122 45568999
Q ss_pred CcEeEEeecCCC
Q 021911 275 FKPFEQVTLEPF 286 (305)
Q Consensus 275 f~~~e~~~l~p~ 286 (305)
|++++...+.+.
T Consensus 230 f~~~~~~~~~~~ 241 (256)
T d1qzza2 230 LALASERTSGST 241 (256)
T ss_dssp EEEEEEEEECCS
T ss_pred CceeEEEEeCCc
Confidence 999988766554
|
| >d1r18a_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Protein-L-isoaspartyl O-methyltransferase domain: Protein-L-isoaspartyl O-methyltransferase species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Probab=99.35 E-value=8.8e-13 Score=113.03 Aligned_cols=162 Identities=18% Similarity=0.261 Sum_probs=103.8
Q ss_pred eeecccccCceEEEeCCccee--eec-cccCCccccCcceeEeecCCCceeeeeecCchhhHHHHHHHccccccCCCCCC
Q 021911 69 VVVEPHRHEGVFIAKGKEDAL--VTK-NLVAGEAVYNEKRISVQNEDGTKVEYRIWNPFRSKLAAAVLGGVDNIWIKPGA 145 (305)
Q Consensus 69 ~~~~~~~~~gv~~~~~~~~~l--~t~-~~~~~~~~y~e~~~~~~d~~~~~~~~~~~~~~~s~l~a~ll~~l~~~~~~~g~ 145 (305)
-+|+.++..|+...+.-.+++ +.+ ..+| +..|.+.-+.+... ...-.| .+.+.+++.|. .++++++
T Consensus 14 ~lv~~l~~~gvi~~~~v~~a~~~vpRe~Fvp-~~aY~D~~lpi~~~------~~is~P---~~~a~~l~~L~-~~l~~g~ 82 (223)
T d1r18a_ 14 DLIRQLKDHGVIASDAVAQAMKETDRKHYSP-RNPYMDAPQPIGGG------VTISAP---HMHAFALEYLR-DHLKPGA 82 (223)
T ss_dssp HHHHHHHHTTSCCCHHHHHHHHTSCGGGTCS-SCTTBSSCEEEETT------EEECCH---HHHHHHHHHTT-TTCCTTC
T ss_pred HHHHHHHHcCCCCCHHHHHHHHhCCHHHcCC-ccccCCCCccccCC------ceeehh---hhHHHHHHHHh-hccCCCC
Confidence 356666777765443222222 223 3333 34566555444321 011112 34556655442 1578999
Q ss_pred EEEEEecCCCccHHHHHhhhCCC-----cEEEEEeCChHHHHHHHHHHHc-------CCCeEEEEccCCCCcccccCCCc
Q 021911 146 RVLYLGAASGTTVSHVSDIVGPN-----GVVYAVEFSHRSGRDLVNMAKK-------RTNVIPIIEDARHPAKYRMLVGM 213 (305)
Q Consensus 146 ~VLDlG~G~G~~t~~la~~~~~~-----~~V~avD~s~~~~~~l~~~a~~-------~~nI~~~~~D~~~~~~~~~~~~~ 213 (305)
+|||+|||+|+.|..||..+++. .+|++||+++..++...+...+ ..||.+++.|.....+. ..+
T Consensus 83 ~VLeIGtGsGY~ta~la~l~g~~g~~~~~~V~~iE~~~~l~~~a~~~l~~~~~~~~~~~nv~~~~~d~~~~~~~---~~~ 159 (223)
T d1r18a_ 83 RILDVGSGSGYLTACFYRYIKAKGVDADTRIVGIEHQAELVRRSKANLNTDDRSMLDSGQLLIVEGDGRKGYPP---NAP 159 (223)
T ss_dssp EEEEESCTTSHHHHHHHHHHHHSCCCTTCEEEEEESCHHHHHHHHHHHHHHHHHHHHHTSEEEEESCGGGCCGG---GCS
T ss_pred eEEEecCCCCHHHHHHHHHhhhccCCcccEEEEEecCHHHHHHHHHhhhhcchhhcCccEEEEEeccccccccc---ccc
Confidence 99999999999999999987543 3899999999554444333221 15899999998765432 468
Q ss_pred EeEEEEeCCChhHHHHHHHHHhccCCCCcEEEEEE
Q 021911 214 VDVIFSDVAQPDQARILALNASYFLKAGGHFVISI 248 (305)
Q Consensus 214 fD~V~~d~~~~~~~~~l~~~a~~~LkpGG~lv~s~ 248 (305)
||+|+++.+.+...+.+. +.|||||+|++..
T Consensus 160 fD~Iiv~~a~~~~p~~l~----~~Lk~gG~lV~pv 190 (223)
T d1r18a_ 160 YNAIHVGAAAPDTPTELI----NQLASGGRLIVPV 190 (223)
T ss_dssp EEEEEECSCBSSCCHHHH----HTEEEEEEEEEEE
T ss_pred eeeEEEEeechhchHHHH----HhcCCCcEEEEEE
Confidence 999999888654433333 7999999999876
|
| >d1jg1a_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Protein-L-isoaspartyl O-methyltransferase domain: Protein-L-isoaspartyl O-methyltransferase species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=99.32 E-value=3.9e-12 Score=108.27 Aligned_cols=109 Identities=27% Similarity=0.311 Sum_probs=83.7
Q ss_pred HHHHHHccccccCCCCCCEEEEEecCCCccHHHHHhhhCCCcEEEEEeCChHHHHHHHHHHHcC--CCeEEEEccCCCCc
Q 021911 128 LAAAVLGGVDNIWIKPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKR--TNVIPIIEDARHPA 205 (305)
Q Consensus 128 l~a~ll~~l~~~~~~~g~~VLDlG~G~G~~t~~la~~~~~~~~V~avD~s~~~~~~l~~~a~~~--~nI~~~~~D~~~~~ 205 (305)
+.+.+++.| .++++++|||+|||+|+.+..||..++ ..|+++|.++..+..+.+.+++. .|+.+++.|.....
T Consensus 66 ~~a~ml~~L---~l~~g~~VLeIGsGsGY~taila~l~g--~~V~~ie~~~~l~~~a~~~l~~~g~~nv~~~~gd~~~g~ 140 (215)
T d1jg1a_ 66 MVAIMLEIA---NLKPGMNILEVGTGSGWNAALISEIVK--TDVYTIERIPELVEFAKRNLERAGVKNVHVILGDGSKGF 140 (215)
T ss_dssp HHHHHHHHH---TCCTTCCEEEECCTTSHHHHHHHHHHC--SCEEEEESCHHHHHHHHHHHHHTTCCSEEEEESCGGGCC
T ss_pred hHHHHHHhh---ccCccceEEEecCCCChhHHHHHHhhC--ceeEEEeccHHHHHHHHHHHHHcCCceeEEEECccccCC
Confidence 455554433 699999999999999999999999875 57999999995555555555443 79999999997654
Q ss_pred ccccCCCcEeEEEEeCCChhHHHHHHHHHhccCCCCcEEEEEE
Q 021911 206 KYRMLVGMVDVIFSDVAQPDQARILALNASYFLKAGGHFVISI 248 (305)
Q Consensus 206 ~~~~~~~~fD~V~~d~~~~~~~~~l~~~a~~~LkpGG~lv~s~ 248 (305)
+. ..+||+|++..+.+.....+. ..|||||+|++..
T Consensus 141 ~~---~~pfD~Iiv~~a~~~ip~~l~----~qL~~gGrLv~pv 176 (215)
T d1jg1a_ 141 PP---KAPYDVIIVTAGAPKIPEPLI----EQLKIGGKLIIPV 176 (215)
T ss_dssp GG---GCCEEEEEECSBBSSCCHHHH----HTEEEEEEEEEEE
T ss_pred cc---cCcceeEEeecccccCCHHHH----HhcCCCCEEEEEE
Confidence 32 479999999877554333333 6899999999876
|
| >d1uwva2 c.66.1.40 (A:75-432) rRNA (Uracil-5-)-methyltransferase RumA, catalytic domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: (Uracil-5-)-methyltransferase domain: rRNA (Uracil-5-)-methyltransferase RumA, catalytic domain species: Escherichia coli [TaxId: 562]
Probab=99.30 E-value=1.9e-11 Score=111.45 Aligned_cols=135 Identities=18% Similarity=0.132 Sum_probs=99.1
Q ss_pred CCCCCCEEEEEecCCCccHHHHHhhhCCCcEEEEEeCChHHHHHHHHHHHcC--CCeEEEEccCCCCccc-ccCCCcEeE
Q 021911 140 WIKPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKR--TNVIPIIEDARHPAKY-RMLVGMVDV 216 (305)
Q Consensus 140 ~~~~g~~VLDlG~G~G~~t~~la~~~~~~~~V~avD~s~~~~~~l~~~a~~~--~nI~~~~~D~~~~~~~-~~~~~~fD~ 216 (305)
.+.++.+||||.||.|++++.||+.. .+|++||.++.+++++.++++.+ .|+.++..|+...... ......+|+
T Consensus 209 ~~~~~~~vlDLycG~G~fsl~La~~~---~~V~gvE~~~~ai~~A~~na~~n~i~n~~~~~~~~~~~~~~~~~~~~~~d~ 285 (358)
T d1uwva2 209 DVQPEDRVLDLFCGMGNFTLPLATQA---ASVVGVEGVPALVEKGQQNARLNGLQNVTFYHENLEEDVTKQPWAKNGFDK 285 (358)
T ss_dssp TCCTTCEEEEESCTTTTTHHHHHTTS---SEEEEEESCHHHHHHHHHHHHHTTCCSEEEEECCTTSCCSSSGGGTTCCSE
T ss_pred ccCCCceEEEecccccccchhccccc---cEEEeccCcHHHHHHHHHhHHhcccccceeeecchhhhhhhhhhhhccCce
Confidence 57788999999999999999999874 48999999999988888888766 7999999998765322 122467999
Q ss_pred EEEeCCChhHHHHHHHHHhccCCCCcEEEEEEcccccCCCCchhhhHHHHHHHHHHCCCcEeEEeecCCCCCc
Q 021911 217 IFSDVAQPDQARILALNASYFLKAGGHFVISIKANCIDSTVPAEAVFQSEVKKLQQDQFKPFEQVTLEPFERD 289 (305)
Q Consensus 217 V~~d~~~~~~~~~l~~~a~~~LkpGG~lv~s~~~~~i~~~~~~~~v~~~~~~~l~~~Gf~~~e~~~l~p~~~~ 289 (305)
|++|+|-.-..+.+. .+.+ ++|. +++|.. | ++ ..++..+..|.+.||++.+...++.|...
T Consensus 286 vilDPPR~G~~~~~~-~l~~-~~~~-~ivYVS---C-----np-~TlaRDl~~l~~~gy~l~~i~~~D~FP~T 346 (358)
T d1uwva2 286 VLLDPARAGAAGVMQ-QIIK-LEPI-RIVYVS---C-----NP-ATLARDSEALLKAGYTIARLAMLDMFPHT 346 (358)
T ss_dssp EEECCCTTCCHHHHH-HHHH-HCCS-EEEEEE---S-----CH-HHHHHHHHHHHHTTCEEEEEEEECCSTTS
T ss_pred EEeCCCCccHHHHHH-HHHH-cCCC-EEEEEe---C-----CH-HHHHHHHHHHHHCCCeEeEEEEEecCCCC
Confidence 999999432223332 2222 3565 455543 4 22 34677788888899999998877777653
|
| >d2esra1 c.66.1.46 (A:28-179) Putative methyltransferase SPy1538 {Streptococcus pyogenes [TaxId: 1314]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: YhhF-like domain: Putative methyltransferase SPy1538 species: Streptococcus pyogenes [TaxId: 1314]
Probab=99.30 E-value=4e-12 Score=102.42 Aligned_cols=102 Identities=20% Similarity=0.164 Sum_probs=77.5
Q ss_pred CCCEEEEEecCCCccHHHHHhhhCCCcEEEEEeCChHHHHHHHHHHHcC---CCeEEEEccCCCCcccccCCCcEeEEEE
Q 021911 143 PGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKR---TNVIPIIEDARHPAKYRMLVGMVDVIFS 219 (305)
Q Consensus 143 ~g~~VLDlG~G~G~~t~~la~~~~~~~~V~avD~s~~~~~~l~~~a~~~---~nI~~~~~D~~~~~~~~~~~~~fD~V~~ 219 (305)
.+.+|||+|||+|.+++.++.+ ...+|++||.++.+++.+.+.++.. .++++++.|+...... ...+||+|++
T Consensus 14 ~g~~vlDl~~GtG~~~iea~~r--ga~~v~~ve~~~~a~~~~~~n~~~~~~~~~~~ii~~D~~~~l~~--~~~~fDiIf~ 89 (152)
T d2esra1 14 NGGRVLDLFAGSGGLAIEAVSR--GMSAAVLVEKNRKAQAIIQDNIIMTKAENRFTLLKMEAERAIDC--LTGRFDLVFL 89 (152)
T ss_dssp CSCEEEEETCTTCHHHHHHHHT--TCCEEEEECCCHHHHHHHHHHHHTTTCGGGEEEECSCHHHHHHH--BCSCEEEEEE
T ss_pred CCCeEEEcCCccCHHHHHHHHh--Ccceeeeehhchhhhhhhhhhhhhcccccchhhhcccccccccc--cccccceeEe
Confidence 5899999999999999988876 3359999999998877777776655 5699999998765432 3578999999
Q ss_pred eCCChh--HHHHHH-HHHhccCCCCcEEEEEE
Q 021911 220 DVAQPD--QARILA-LNASYFLKAGGHFVISI 248 (305)
Q Consensus 220 d~~~~~--~~~~l~-~~a~~~LkpGG~lv~s~ 248 (305)
|||... ....+. ....++|+|+|.+++.+
T Consensus 90 DPPy~~~~~~~~l~~i~~~~~L~~~g~iiiE~ 121 (152)
T d2esra1 90 DPPYAKETIVATIEALAAKNLLSEQVMVVCET 121 (152)
T ss_dssp CCSSHHHHHHHHHHHHHHTTCEEEEEEEEEEE
T ss_pred chhhccchHHHHHHHHHHCCCcCCCeEEEEEe
Confidence 999432 122232 12346899999999876
|
| >d1xvaa_ c.66.1.5 (A:) Glycine N-methyltransferase {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Glycine N-methyltransferase domain: Glycine N-methyltransferase species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.30 E-value=3.2e-12 Score=113.49 Aligned_cols=104 Identities=17% Similarity=0.097 Sum_probs=73.1
Q ss_pred CCCCCEEEEEecCCCccHHHHHhhhCCCcEEEEEeCChHHHHHHHHHHHcC------CCeEEEEccCCCCcccccCCCcE
Q 021911 141 IKPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKR------TNVIPIIEDARHPAKYRMLVGMV 214 (305)
Q Consensus 141 ~~~g~~VLDlG~G~G~~t~~la~~~~~~~~V~avD~s~~~~~~l~~~a~~~------~nI~~~~~D~~~~~~~~~~~~~f 214 (305)
.+++.+|||+|||+|..+..||+. + .+|+|||+|+.+++.+.+.+... ....+...|+...+........|
T Consensus 54 ~~~~~~vLD~GcG~G~~~~~la~~-g--~~v~gvD~S~~ml~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f 130 (292)
T d1xvaa_ 54 QHGCHRVLDVACGTGVDSIMLVEE-G--FSVTSVDASDKMLKYALKERWNRRKEPAFDKWVIEEANWLTLDKDVPAGDGF 130 (292)
T ss_dssp HTTCCEEEESSCTTSHHHHHHHHT-T--CEEEEEESCHHHHHHHHHHHHHTTTSHHHHTCEEEECCGGGHHHHSCCTTCE
T ss_pred hcCCCEEEEecCCCcHHHHHHHHc-C--CeeeeccCchHHHHHHHHHHHhcccccccceeeeeeccccccccccCCCCCc
Confidence 456789999999999999999987 2 48999999996655554444333 13445555554433221234689
Q ss_pred eEEEEeCC-----------ChhHHHHHHHHHhccCCCCcEEEEEE
Q 021911 215 DVIFSDVA-----------QPDQARILALNASYFLKAGGHFVISI 248 (305)
Q Consensus 215 D~V~~d~~-----------~~~~~~~l~~~a~~~LkpGG~lv~s~ 248 (305)
|+|+|... ..++..+|. ++.++|||||.|++.+
T Consensus 131 d~v~~~~~~~~~~~~~~~~~~~~~~~l~-~~~~~LkpgG~li~~~ 174 (292)
T d1xvaa_ 131 DAVICLGNSFAHLPDSKGDQSEHRLALK-NIASMVRPGGLLVIDH 174 (292)
T ss_dssp EEEEECSSCGGGSCCTTSSSHHHHHHHH-HHHHTEEEEEEEEEEE
T ss_pred eEEEEecCchhhcCCcccChHHHHHHHH-HHHHHcCcCcEEEEee
Confidence 99997321 124556676 9999999999999975
|
| >d2igta1 c.66.1.51 (A:1-309) Putative methyltransferase Atu0340 {Agrobacterium tumefaciens [TaxId: 358]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: hypothetical RNA methyltransferase domain: Putative methyltransferase Atu0340 species: Agrobacterium tumefaciens [TaxId: 358]
Probab=99.30 E-value=6e-12 Score=112.42 Aligned_cols=105 Identities=15% Similarity=0.016 Sum_probs=79.9
Q ss_pred CCCCCEEEEEecCCCccHHHHHhhhCCCcEEEEEeCChHHHHHHHHHHHcC----CCeEEEEccCCCCccc-ccCCCcEe
Q 021911 141 IKPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKR----TNVIPIIEDARHPAKY-RMLVGMVD 215 (305)
Q Consensus 141 ~~~g~~VLDlG~G~G~~t~~la~~~~~~~~V~avD~s~~~~~~l~~~a~~~----~nI~~~~~D~~~~~~~-~~~~~~fD 215 (305)
...+.+|||++|++|.+++++|.. . .+|++||.|+.++..+.++++.+ .++.+++.|+...... ......||
T Consensus 130 ~~~~~rVLdlf~~tG~~sl~aa~~--G-A~V~~VD~s~~al~~a~~N~~ln~~~~~~~~~i~~D~~~~l~~~~~~~~~fD 206 (309)
T d2igta1 130 ADRPLKVLNLFGYTGVASLVAAAA--G-AEVTHVDASKKAIGWAKENQVLAGLEQAPIRWICEDAMKFIQREERRGSTYD 206 (309)
T ss_dssp SSSCCEEEEETCTTCHHHHHHHHT--T-CEEEEECSCHHHHHHHHHHHHHHTCTTSCEEEECSCHHHHHHHHHHHTCCBS
T ss_pred ccCCCeEEEecCCCcHHHHHHHhC--C-CeEEEEeChHHHHHHHHHhhhhhcccCCcEEEEeCCHHHhHHHHhhcCCCCC
Confidence 456789999999999999999875 2 48999999998777777666543 3699999999765422 11246899
Q ss_pred EEEEeCCC------------hhHHHHHHHHHhccCCCCcEEEEEE
Q 021911 216 VIFSDVAQ------------PDQARILALNASYFLKAGGHFVISI 248 (305)
Q Consensus 216 ~V~~d~~~------------~~~~~~l~~~a~~~LkpGG~lv~s~ 248 (305)
+||+|+|. .+....+...+..+|+|+|.+++++
T Consensus 207 ~IilDPP~f~~~~~~~~~~~~~~~~~l~~~~~~ll~~~g~~ll~t 251 (309)
T d2igta1 207 IILTDPPKFGRGTHGEVWQLFDHLPLMLDICREILSPKALGLVLT 251 (309)
T ss_dssp EEEECCCSEEECTTCCEEEHHHHHHHHHHHHHHTBCTTCCEEEEE
T ss_pred EEEECCCcccccccchhHHHHHHHHHHHHHHHHhcCCCCCEEEEe
Confidence 99999992 2344445447889999999887776
|
| >d2g72a1 c.66.1.15 (A:18-280) Phenylethanolamine N-methyltransferase, PNMTase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Arylamine N-methyltransferase domain: Phenylethanolamine N-methyltransferase, PNMTase species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.28 E-value=2.9e-11 Score=105.83 Aligned_cols=138 Identities=14% Similarity=0.101 Sum_probs=86.0
Q ss_pred CCCCCEEEEEecCCCccHHHHHhhhCCCcEEEEEeCChHHHHHHHHHHHcCC----------------------------
Q 021911 141 IKPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKRT---------------------------- 192 (305)
Q Consensus 141 ~~~g~~VLDlG~G~G~~t~~la~~~~~~~~V~avD~s~~~~~~l~~~a~~~~---------------------------- 192 (305)
...+.+|||+|||+|..+...+... -.+|+++|+|+.+++.+.+.+++..
T Consensus 52 ~~~g~~vLDiGcG~g~~~~~~~~~~--~~~v~~~D~S~~~i~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~ 129 (263)
T d2g72a1 52 EVSGRTLIDIGSGPTVYQLLSACSH--FEDITMTDFLEVNRQELGRWLQEEPGAFNWSMYSQHACLIEGKGECWQDKERQ 129 (263)
T ss_dssp CSCCSEEEEETCTTCCGGGTTGGGG--CSEEEEECSCHHHHHHHHHHHTTCTTCCCCHHHHHHHHHHHCSCCCHHHHHHH
T ss_pred CCCCcEEEEeccCCCHHHHHHhccc--CCeEEEEeCCHHHHHHHHHHHhcCcccccchhhhhhhhhhccccchhhhhHHH
Confidence 4467899999999998876655443 2389999999976665554443221
Q ss_pred ----CeEEEEccCCCCcccc---cCCCcEeEEEEeCC----Ch---hHHHHHHHHHhccCCCCcEEEEEEcccccCCCCc
Q 021911 193 ----NVIPIIEDARHPAKYR---MLVGMVDVIFSDVA----QP---DQARILALNASYFLKAGGHFVISIKANCIDSTVP 258 (305)
Q Consensus 193 ----nI~~~~~D~~~~~~~~---~~~~~fD~V~~d~~----~~---~~~~~l~~~a~~~LkpGG~lv~s~~~~~i~~~~~ 258 (305)
....+.+|++...... ....+||+|++... ++ +...++. ++.++|||||+|++............
T Consensus 130 ~~~~~~~~~~~Dv~~~~~~~~~~~~~~~fD~V~~~~~l~~i~~~~~~~~~~l~-~~~~~LkPGG~li~~~~~~~~~~~~~ 208 (263)
T d2g72a1 130 LRARVKRVLPIDVHQPQPLGAGSPAPLPADALVSAFCLEAVSPDLASFQRALD-HITTLLRPGGHLLLIGALEESWYLAG 208 (263)
T ss_dssp HHHHEEEEECCCTTSSSTTCSSCSSCSSEEEEEEESCHHHHCSSHHHHHHHHH-HHHTTEEEEEEEEEEEEESCCEEEET
T ss_pred hhhhhhccccccccCCCccccCCcCcCccCeeeeHHHHHHHccCHHHHHHHHH-HHHHHcCCCCEEEEecccCCcccccC
Confidence 1134556775543221 22358999998665 32 3455565 99999999999999874322110000
Q ss_pred h----h-hhHHHH-HHHHHHCCCcEeEEe
Q 021911 259 A----E-AVFQSE-VKKLQQDQFKPFEQV 281 (305)
Q Consensus 259 ~----~-~v~~~~-~~~l~~~Gf~~~e~~ 281 (305)
. . .+-.++ .+.|+++||++++..
T Consensus 209 ~~~~~~~~~t~e~v~~~l~~aGf~v~~~~ 237 (263)
T d2g72a1 209 EARLTVVPVSEEEVREALVRSGYKVRDLR 237 (263)
T ss_dssp TEEEECCCCCHHHHHHHHHHTTEEEEEEE
T ss_pred CcccccCCCCHHHHHHHHHHCCCeEEEEE
Confidence 0 0 011223 466789999987643
|
| >d1ej0a_ c.66.1.2 (A:) RNA methyltransferase FtsJ {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: RNA methyltransferase FtsJ domain: RNA methyltransferase FtsJ species: Escherichia coli [TaxId: 562]
Probab=99.25 E-value=3.2e-11 Score=99.75 Aligned_cols=114 Identities=27% Similarity=0.279 Sum_probs=84.2
Q ss_pred hhHHHHHHHcccccc-CCCCCCEEEEEecCCCccHHHHHhhhCCCcEEEEEeCChHHHHHHHHHHHcCCCeEEEEccCCC
Q 021911 125 RSKLAAAVLGGVDNI-WIKPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKRTNVIPIIEDARH 203 (305)
Q Consensus 125 ~s~l~a~ll~~l~~~-~~~~g~~VLDlG~G~G~~t~~la~~~~~~~~V~avD~s~~~~~~l~~~a~~~~nI~~~~~D~~~ 203 (305)
+|+.+-.|++..++. .++++.+||||||+||.|+..+++.+...+.|+++|+.+ ....+++.+++.|+.+
T Consensus 3 rsRaafKL~EI~~k~~l~k~~~~vlDLg~aPGgw~q~~~~~~~~~~~v~~vDl~~---------~~~i~~~~~~~~d~~~ 73 (180)
T d1ej0a_ 3 RSRAWFKLDEIQQSDKLFKPGMTVVDLGAAPGGWSQYVVTQIGGKGRIIACDLLP---------MDPIVGVDFLQGDFRD 73 (180)
T ss_dssp SCHHHHHHHHHHHHHCCCCTTCEEEEESCTTCHHHHHHHHHHCTTCEEEEEESSC---------CCCCTTEEEEESCTTS
T ss_pred hhHHHHHHHHHHHHhCccCCCCeEEEEeccCCcceEEEEeeccccceEEEeeccc---------ccccCCceEeeccccc
Confidence 555555665544433 357899999999999999999999988888999999987 2234789999999977
Q ss_pred Cccc-----ccCCCcEeEEEEeCCC-------hhHH-------HHHHHHHhccCCCCcEEEEEE
Q 021911 204 PAKY-----RMLVGMVDVIFSDVAQ-------PDQA-------RILALNASYFLKAGGHFVISI 248 (305)
Q Consensus 204 ~~~~-----~~~~~~fD~V~~d~~~-------~~~~-------~~l~~~a~~~LkpGG~lv~s~ 248 (305)
.... ......||+|++|++. .++. ..+. -|.++||+||.|++-+
T Consensus 74 ~~~~~~~~~~~~~~~~DlVlSD~ap~~sg~~~~d~~~~~~L~~~~l~-~a~~~Lk~gG~fV~K~ 136 (180)
T d1ej0a_ 74 ELVMKALLERVGDSKVQVVMSDMAPNMSGTPAVDIPRAMYLVELALE-MCRDVLAPGGSFVVKV 136 (180)
T ss_dssp HHHHHHHHHHHTTCCEEEEEECCCCCCCSCHHHHHHHHHHHHHHHHH-HHHHHEEEEEEEEEEE
T ss_pred chhhhhhhhhccCcceeEEEecccchhcccchhHHHHHHHHHHHHHH-hhhhccCCCCcEEEEE
Confidence 5421 1234689999999982 1211 1222 3778999999999987
|
| >d1ne2a_ c.66.1.32 (A:) Hypothetical protein Ta1320 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Ta1320-like domain: Hypothetical protein Ta1320 species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Probab=99.23 E-value=7.6e-12 Score=104.93 Aligned_cols=87 Identities=20% Similarity=0.130 Sum_probs=64.0
Q ss_pred hhHHHHHHHccccccCCCCCCEEEEEecCCCccHHHHHhhhCCCcEEEEEeCChHHHHHHHHHHHcC-CCeEEEEccCCC
Q 021911 125 RSKLAAAVLGGVDNIWIKPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKR-TNVIPIIEDARH 203 (305)
Q Consensus 125 ~s~l~a~ll~~l~~~~~~~g~~VLDlG~G~G~~t~~la~~~~~~~~V~avD~s~~~~~~l~~~a~~~-~nI~~~~~D~~~ 203 (305)
.+.+++.++..+....--.+.+|||+|||+|.++..++.. ...+|++||+++ ++++.++++ .++.+++.|+.+
T Consensus 30 ~~~~a~~~~~~~~~~~dl~Gk~VLDlGcGtG~l~i~a~~~--ga~~V~~vDid~----~a~~~ar~N~~~~~~~~~D~~~ 103 (197)
T d1ne2a_ 30 DASTAAYFLIEIYNDGNIGGRSVIDAGTGNGILACGSYLL--GAESVTAFDIDP----DAIETAKRNCGGVNFMVADVSE 103 (197)
T ss_dssp CHHHHHHHHHHHHHHTSSBTSEEEEETCTTCHHHHHHHHT--TBSEEEEEESCH----HHHHHHHHHCTTSEEEECCGGG
T ss_pred CHHHHHHHHHHHHHcCCCCCCEEEEeCCCCcHHHHHHHHc--CCCcccccccCH----HHHHHHHHccccccEEEEehhh
Confidence 3556666554333333335899999999999988777765 345899999999 455555554 679999999876
Q ss_pred CcccccCCCcEeEEEEeCCC
Q 021911 204 PAKYRMLVGMVDVIFSDVAQ 223 (305)
Q Consensus 204 ~~~~~~~~~~fD~V~~d~~~ 223 (305)
. ..+||+|++|+|.
T Consensus 104 l------~~~fD~Vi~NPPf 117 (197)
T d1ne2a_ 104 I------SGKYDTWIMNPPF 117 (197)
T ss_dssp C------CCCEEEEEECCCC
T ss_pred c------CCcceEEEeCccc
Confidence 4 3689999999994
|
| >d1jqea_ c.66.1.19 (A:) Histamine methyltransferase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Histamine methyltransferase domain: Histamine methyltransferase species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.22 E-value=5.9e-12 Score=110.88 Aligned_cols=109 Identities=16% Similarity=0.020 Sum_probs=74.2
Q ss_pred CCCCCCEEEEEecCCCccHHHHHhhhC-----CCcEEEEEeCChHHHHHHHHHHHcC---CCeEEEEccCC--CCc---c
Q 021911 140 WIKPGARVLYLGAASGTTVSHVSDIVG-----PNGVVYAVEFSHRSGRDLVNMAKKR---TNVIPIIEDAR--HPA---K 206 (305)
Q Consensus 140 ~~~~g~~VLDlG~G~G~~t~~la~~~~-----~~~~V~avD~s~~~~~~l~~~a~~~---~nI~~~~~D~~--~~~---~ 206 (305)
..++..+|||+|||+|.++..|+..+. ....+++||+|+.++..+.+.++.. .++.+...+.+ ... .
T Consensus 37 ~~~~~~~VLDiGcG~G~~~~~ll~~l~~~~~~~~~~~~~vD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 116 (280)
T d1jqea_ 37 DTKSEIKILSIGGGAGEIDLQILSKVQAQYPGVCINNEVVEPSAEQIAKYKELVAKISNLENVKFAWHKETSSEYQSRML 116 (280)
T ss_dssp TTCSEEEEEEETCTTSHHHHHHHHHHHHHSTTCEEEEEEECCCHHHHHHHHHHHTTCCSCTTEEEEEECSCHHHHHHHHT
T ss_pred cCCCCCeEEEEcCCCCHHHHHHHHHhhhhccCCceEEEEEeCcHHHHHHHHHHHhhccccccccccchhhhhhhhcchhc
Confidence 345556899999999999998877541 2346899999996655555554433 34444332221 110 0
Q ss_pred cccCCCcEeEEEEeCC---ChhHHHHHHHHHhccCCCCcEEEEEEc
Q 021911 207 YRMLVGMVDVIFSDVA---QPDQARILALNASYFLKAGGHFVISIK 249 (305)
Q Consensus 207 ~~~~~~~fD~V~~d~~---~~~~~~~l~~~a~~~LkpGG~lv~s~~ 249 (305)
......+||+|++... .++...++. +++++|||||.|++.+.
T Consensus 117 ~~~~~~~fD~I~~~~~l~~~~d~~~~l~-~l~~~LkpgG~l~i~~~ 161 (280)
T d1jqea_ 117 EKKELQKWDFIHMIQMLYYVKDIPATLK-FFHSLLGTNAKMLIIVV 161 (280)
T ss_dssp TSSSCCCEEEEEEESCGGGCSCHHHHHH-HHHHTEEEEEEEEEEEE
T ss_pred ccCCCCceeEEEEccceecCCCHHHHHH-HHHhhCCCCCEEEEEEe
Confidence 1123579999999666 456777787 99999999999999873
|
| >d2fpoa1 c.66.1.46 (A:10-192) Methylase YhhF {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: YhhF-like domain: Methylase YhhF species: Escherichia coli [TaxId: 562]
Probab=99.22 E-value=9.2e-12 Score=103.34 Aligned_cols=121 Identities=12% Similarity=0.048 Sum_probs=86.2
Q ss_pred CchhhHHHHHHHccccccCCCCCCEEEEEecCCCccHHHHHhhhCCCcEEEEEeCChHHHHHHHHHHHcC--CCeEEEEc
Q 021911 122 NPFRSKLAAAVLGGVDNIWIKPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKR--TNVIPIIE 199 (305)
Q Consensus 122 ~~~~s~l~a~ll~~l~~~~~~~g~~VLDlG~G~G~~t~~la~~~~~~~~V~avD~s~~~~~~l~~~a~~~--~nI~~~~~ 199 (305)
.|..+++-..+...|.. .-.+.+|||++||+|.+++.++.+ ....|+.||.++.+++.+.++++.. .++.++..
T Consensus 24 RPt~~~vre~lfn~l~~--~~~~~~vLDlfaGsG~~giealsr--Ga~~v~~VE~~~~a~~~~k~N~~~~~~~~~~ii~~ 99 (183)
T d2fpoa1 24 RPTTDRVRETLFNWLAP--VIVDAQCLDCFAGSGALGLEALSR--YAAGATLIEMDRAVSQQLIKNLATLKAGNARVVNS 99 (183)
T ss_dssp ---CHHHHHHHHHHHHH--HHTTCEEEETTCTTCHHHHHHHHT--TCSEEEEECSCHHHHHHHHHHHHHTTCCSEEEECS
T ss_pred CcCcHHHHHHHHhhhhc--ccchhhhhhhhccccceeeeEEec--CcceeEEEEEeechhhHHHHHHhhccccceeeeee
Confidence 45566666666655542 235789999999999999998887 3458999999998887777766654 68889999
Q ss_pred cCCCCcccccCCCcEeEEEEeCCCh--hHHHHHHH-HHhccCCCCcEEEEEE
Q 021911 200 DARHPAKYRMLVGMVDVIFSDVAQP--DQARILAL-NASYFLKAGGHFVISI 248 (305)
Q Consensus 200 D~~~~~~~~~~~~~fD~V~~d~~~~--~~~~~l~~-~a~~~LkpGG~lv~s~ 248 (305)
|+...... ...+||+||+|||.. ....++.. ....+|+++|.+++.+
T Consensus 100 d~~~~l~~--~~~~fDlIf~DPPY~~~~~~~~l~~l~~~~~L~~~~iIiiE~ 149 (183)
T d2fpoa1 100 NAMSFLAQ--KGTPHNIVFVDPPFRRGLLEETINLLEDNGWLADEALIYVES 149 (183)
T ss_dssp CHHHHHSS--CCCCEEEEEECCSSSTTTHHHHHHHHHHTTCEEEEEEEEEEE
T ss_pred cccccccc--cccccCEEEEcCccccchHHHHHHHHHHCCCCCCCeEEEEEe
Confidence 98655332 356899999999933 22333331 2345799999999976
|
| >d2fhpa1 c.66.1.46 (A:1-182) Putative methylase EF2452 {Enterococcus faecalis [TaxId: 1351]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: YhhF-like domain: Putative methylase EF2452 species: Enterococcus faecalis [TaxId: 1351]
Probab=99.21 E-value=1.6e-11 Score=101.80 Aligned_cols=122 Identities=12% Similarity=0.027 Sum_probs=88.6
Q ss_pred CchhhHHHHHHHccccccCCCCCCEEEEEecCCCccHHHHHhhhCCCcEEEEEeCChHHHHHHHHHHHcC---CCeEEEE
Q 021911 122 NPFRSKLAAAVLGGVDNIWIKPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKR---TNVIPII 198 (305)
Q Consensus 122 ~~~~s~l~a~ll~~l~~~~~~~g~~VLDlG~G~G~~t~~la~~~~~~~~V~avD~s~~~~~~l~~~a~~~---~nI~~~~ 198 (305)
.|..+++-..+...|. ...++.+||||+||+|.+++.++.+ ....|+.||.++.++..+.++++.. .++++++
T Consensus 22 RPt~~~vrealFn~l~--~~~~~~~vLDlfaGsG~~g~ea~sr--Ga~~v~~ve~~~~a~~~~~~N~~~~~~~~~~~i~~ 97 (182)
T d2fhpa1 22 RPTTDKVKESIFNMIG--PYFDGGMALDLYSGSGGLAIEAVSR--GMDKSICIEKNFAALKVIKENIAITKEPEKFEVRK 97 (182)
T ss_dssp CCCCHHHHHHHHHHHC--SCCSSCEEEETTCTTCHHHHHHHHT--TCSEEEEEESCHHHHHHHHHHHHHHTCGGGEEEEE
T ss_pred CcCcHHHHHHHHHHHH--HhcCCCEEEEcccccccccceeeec--chhHHHHHHHHHHHHHHHHHHhhhhhccccccccc
Confidence 5556667666666554 3346899999999999999999987 4558999999997777766665533 5799999
Q ss_pred ccCCCCccc-ccCCCcEeEEEEeCCCh--hHHHHHHHHH--hccCCCCcEEEEEE
Q 021911 199 EDARHPAKY-RMLVGMVDVIFSDVAQP--DQARILALNA--SYFLKAGGHFVISI 248 (305)
Q Consensus 199 ~D~~~~~~~-~~~~~~fD~V~~d~~~~--~~~~~l~~~a--~~~LkpGG~lv~s~ 248 (305)
.|+...... .....+||+||+|||.. +...++. .+ ..+|+++|.+++.+
T Consensus 98 ~D~~~~l~~~~~~~~~fDlIflDPPY~~~~~~~~l~-~i~~~~~L~~~giIi~E~ 151 (182)
T d2fhpa1 98 MDANRALEQFYEEKLQFDLVLLDPPYAKQEIVSQLE-KMLERQLLTNEAVIVCET 151 (182)
T ss_dssp SCHHHHHHHHHHTTCCEEEEEECCCGGGCCHHHHHH-HHHHTTCEEEEEEEEEEE
T ss_pred ccchhhhhhhcccCCCcceEEechhhhhhHHHHHHH-HHHHCCCCCCCEEEEEEc
Confidence 998765322 11245899999999932 2334444 33 35899999998875
|
| >d1ws6a1 c.66.1.46 (A:15-185) Methyltransferase TTHA0928 {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: YhhF-like domain: Methyltransferase TTHA0928 species: Thermus thermophilus [TaxId: 274]
Probab=99.20 E-value=6.8e-12 Score=103.04 Aligned_cols=123 Identities=19% Similarity=0.096 Sum_probs=79.3
Q ss_pred CchhhHHHHHHHccccccCCCCCCEEEEEecCCCccHHHHHhhhCCCcEEEEEeCChHHHHHHHHHHHcC-CCeEEEEcc
Q 021911 122 NPFRSKLAAAVLGGVDNIWIKPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKR-TNVIPIIED 200 (305)
Q Consensus 122 ~~~~s~l~a~ll~~l~~~~~~~g~~VLDlG~G~G~~t~~la~~~~~~~~V~avD~s~~~~~~l~~~a~~~-~nI~~~~~D 200 (305)
+|..+++-..+...|.. .+..+.+|||+|||+|.+++.++.. . .+|++||.|+.+++.+.++++.. -+..++..|
T Consensus 21 Rpt~~~v~e~lf~~l~~-~~~~g~~vLDl~~G~G~~~i~a~~~--g-a~vv~vD~~~~a~~~~~~N~~~~~~~~~v~~~~ 96 (171)
T d1ws6a1 21 RPSPVRLRKALFDYLRL-RYPRRGRFLDPFAGSGAVGLEAASE--G-WEAVLVEKDPEAVRLLKENVRRTGLGARVVALP 96 (171)
T ss_dssp CCCCHHHHHHHHHHHHH-HCTTCCEEEEETCSSCHHHHHHHHT--T-CEEEEECCCHHHHHHHHHHHHHHTCCCEEECSC
T ss_pred CCCcHHHHHHHHHHhhc-cccCCCeEEEeccccchhhhhhhhc--c-chhhhcccCHHHHhhhhHHHHhhccccceeeee
Confidence 45555555555444432 3567889999999999999988776 2 47899999998777776666553 223344444
Q ss_pred CCCCc-ccccCCCcEeEEEEeCCCh-hHHHHHH-HHHhccCCCCcEEEEEE
Q 021911 201 ARHPA-KYRMLVGMVDVIFSDVAQP-DQARILA-LNASYFLKAGGHFVISI 248 (305)
Q Consensus 201 ~~~~~-~~~~~~~~fD~V~~d~~~~-~~~~~l~-~~a~~~LkpGG~lv~s~ 248 (305)
+.... .......+||+|++|||.. +..+++. .....+|+|+|.+++.+
T Consensus 97 ~d~~~~~~~~~~~~fD~If~DPPY~~~~~~~l~~l~~~~ll~~~g~ivie~ 147 (171)
T d1ws6a1 97 VEVFLPEAKAQGERFTVAFMAPPYAMDLAALFGELLASGLVEAGGLYVLQH 147 (171)
T ss_dssp HHHHHHHHHHTTCCEEEEEECCCTTSCTTHHHHHHHHHTCEEEEEEEEEEE
T ss_pred hhcccccccccCCccceeEEccccccCHHHHHHHHHHcCCcCCCeEEEEEe
Confidence 32221 1112346899999999932 2222222 12346899999999876
|
| >d1g6q1_ c.66.1.6 (1:) Arginine methyltransferase, HMT1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Arginine methyltransferase domain: Arginine methyltransferase, HMT1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.19 E-value=2.6e-11 Score=109.45 Aligned_cols=98 Identities=15% Similarity=0.142 Sum_probs=73.8
Q ss_pred CCCCCEEEEEecCCCccHHHHHhhhCCCcEEEEEeCChHHHHHHHHHHHcC---CCeEEEEccCCCCcccccCCCcEeEE
Q 021911 141 IKPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKR---TNVIPIIEDARHPAKYRMLVGMVDVI 217 (305)
Q Consensus 141 ~~~g~~VLDlG~G~G~~t~~la~~~~~~~~V~avD~s~~~~~~l~~~a~~~---~nI~~~~~D~~~~~~~~~~~~~fD~V 217 (305)
..++++|||||||+|.++..+|+. ....|+++|.|+ .+..+.+.++++ .+|++++.|+.+... ...+||+|
T Consensus 36 ~~~~~~VLDlGcGtG~ls~~aa~~--Ga~~V~avd~s~-~~~~a~~~~~~~~~~~~i~~i~~~~~~l~~---~~~~~D~i 109 (328)
T d1g6q1_ 36 LFKDKIVLDVGCGTGILSMFAAKH--GAKHVIGVDMSS-IIEMAKELVELNGFSDKITLLRGKLEDVHL---PFPKVDII 109 (328)
T ss_dssp HHTTCEEEEETCTTSHHHHHHHHT--CCSEEEEEESST-HHHHHHHHHHHTTCTTTEEEEESCTTTSCC---SSSCEEEE
T ss_pred cCCcCEEEEeCCCCCHHHHHHHHh--CCCEEEEEeCCH-HHHHHHHHHHHhCccccceEEEeehhhccC---cccceeEE
Confidence 457899999999999999988876 345899999997 333444444443 679999999987642 35799999
Q ss_pred EEeCC------ChhHHHHHHHHHhccCCCCcEEE
Q 021911 218 FSDVA------QPDQARILALNASYFLKAGGHFV 245 (305)
Q Consensus 218 ~~d~~------~~~~~~~l~~~a~~~LkpGG~lv 245 (305)
+++.. ......++. ...++|||||.++
T Consensus 110 ~se~~~~~~~~e~~~~~~~~-a~~r~LkpgG~ii 142 (328)
T d1g6q1_ 110 ISEWMGYFLLYESMMDTVLY-ARDHYLVEGGLIF 142 (328)
T ss_dssp EECCCBTTBSTTCCHHHHHH-HHHHHEEEEEEEE
T ss_pred EEEecceeeccchhHHHHHH-HHHhccCCCeEEE
Confidence 99765 234455555 7789999999885
|
| >d1nw3a_ c.66.1.31 (A:) Catalytic, N-terminal domain of histone methyltransferase Dot1l {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Catalytic, N-terminal domain of histone methyltransferase Dot1l domain: Catalytic, N-terminal domain of histone methyltransferase Dot1l species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.19 E-value=3e-11 Score=109.12 Aligned_cols=116 Identities=21% Similarity=0.210 Sum_probs=84.1
Q ss_pred HHHHHHHccccccCCCCCCEEEEEecCCCccHHHHHhhhCCCcEEEEEeCChHHHHHHHHHHHc-----------CCCeE
Q 021911 127 KLAAAVLGGVDNIWIKPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKK-----------RTNVI 195 (305)
Q Consensus 127 ~l~a~ll~~l~~~~~~~g~~VLDlG~G~G~~t~~la~~~~~~~~V~avD~s~~~~~~l~~~a~~-----------~~nI~ 195 (305)
.+...++ +.+.++++++|||||||+|..+.++|...+ ...|++||+|+.++..+.++.++ ..+|.
T Consensus 138 ~~~~~~~---~~~~l~~~~~vlD~GcG~G~~~~~~a~~~~-~~~~~Gid~s~~~~~~a~~~~~~~~~~~~~~g~~~~~i~ 213 (328)
T d1nw3a_ 138 DLVAQMI---DEIKMTDDDLFVDLGSGVGQVVLQVAAATN-CKHHYGVEKADIPAKYAETMDREFRKWMKWYGKKHAEYT 213 (328)
T ss_dssp HHHHHHH---HHSCCCTTCEEEEETCTTSHHHHHHHHHCC-CSEEEEEECSHHHHHHHHHHHHHHHHHHHHHTCCCCCEE
T ss_pred HHHHHHH---HHcCCCCCCEEEEcCCCCCHHHHHHHHHhC-CCeEEEEeCCHHHHHHHHHHHHHHHHHhhhccccCCceE
Confidence 3444444 344689999999999999999999998763 45899999999665444333221 25899
Q ss_pred EEEccCCCCcccccCCCcEeEEEEeCC--ChhHHHHHHHHHhccCCCCcEEEEEE
Q 021911 196 PIIEDARHPAKYRMLVGMVDVIFSDVA--QPDQARILALNASYFLKAGGHFVISI 248 (305)
Q Consensus 196 ~~~~D~~~~~~~~~~~~~fD~V~~d~~--~~~~~~~l~~~a~~~LkpGG~lv~s~ 248 (305)
+++.|+.+.+... ....+|+|+++.. .++....+. ++.+.|||||++++..
T Consensus 214 ~~~gd~~~~~~~~-~~~~advi~~~~~~f~~~~~~~l~-e~~r~LKpGg~iv~~~ 266 (328)
T d1nw3a_ 214 LERGDFLSEEWRE-RIANTSVIFVNNFAFGPEVDHQLK-ERFANMKEGGRIVSSK 266 (328)
T ss_dssp EEECCTTSHHHHH-HHHHCSEEEECCTTTCHHHHHHHH-HHHTTCCTTCEEEESS
T ss_pred EEECccccccccc-ccCcceEEEEcceecchHHHHHHH-HHHHhCCCCcEEEEec
Confidence 9999998764221 1124688888655 456667777 8999999999998754
|
| >d2fyta1 c.66.1.6 (A:238-548) Protein arginine N-methyltransferase 3, PRMT3 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Arginine methyltransferase domain: Protein arginine N-methyltransferase 3, PRMT3 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.17 E-value=6.4e-11 Score=105.99 Aligned_cols=101 Identities=18% Similarity=0.145 Sum_probs=74.6
Q ss_pred CCCCCCEEEEEecCCCccHHHHHhhhCCCcEEEEEeCChHHHHHHHHHHHcC---CCeEEEEccCCCCcccccCCCcEeE
Q 021911 140 WIKPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKR---TNVIPIIEDARHPAKYRMLVGMVDV 216 (305)
Q Consensus 140 ~~~~g~~VLDlG~G~G~~t~~la~~~~~~~~V~avD~s~~~~~~l~~~a~~~---~nI~~~~~D~~~~~~~~~~~~~fD~ 216 (305)
...++++|||||||+|.++..+|+. ...+|+++|.|+.+.. +.+.+++. .+|.+++.|+.+... ...+||+
T Consensus 32 ~~~~~~~VLDiGcG~G~lsl~aa~~--Ga~~V~aid~s~~~~~-a~~~~~~~~~~~~i~~~~~~~~~l~~---~~~~~D~ 105 (311)
T d2fyta1 32 HIFKDKVVLDVGCGTGILSMFAAKA--GAKKVLGVDQSEILYQ-AMDIIRLNKLEDTITLIKGKIEEVHL---PVEKVDV 105 (311)
T ss_dssp GGTTTCEEEEETCTTSHHHHHHHHT--TCSEEEEEESSTHHHH-HHHHHHHTTCTTTEEEEESCTTTSCC---SCSCEEE
T ss_pred ccCCcCEEEEECCCCCHHHHHHHHc--CCCEEEEEeCHHHHHH-HHHHHHHhCCCccceEEEeeHHHhcC---ccccceE
Confidence 4567899999999999999998886 3358999999986543 33333332 689999999988753 2479999
Q ss_pred EEEeCC-----ChhHHHHHHHHHhccCCCCcEEEE
Q 021911 217 IFSDVA-----QPDQARILALNASYFLKAGGHFVI 246 (305)
Q Consensus 217 V~~d~~-----~~~~~~~l~~~a~~~LkpGG~lv~ 246 (305)
|+++.. .......+.....++|||||+++-
T Consensus 106 Ivse~~~~~~~~e~~~~~~~~a~~~~Lkp~G~iip 140 (311)
T d2fyta1 106 IISEWMGYFLLFESMLDSVLYAKNKYLAKGGSVYP 140 (311)
T ss_dssp EEECCCBTTBTTTCHHHHHHHHHHHHEEEEEEEES
T ss_pred EEEeeeeeecccccccHHHHHHHHhcCCCCcEEec
Confidence 999765 223344444367789999999874
|
| >d1m6ya2 c.66.1.23 (A:2-114,A:216-294) TM0872, methyltransferase domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: MraW-like putative methyltransferases domain: TM0872, methyltransferase domain species: Thermotoga maritima [TaxId: 2336]
Probab=99.17 E-value=7.6e-11 Score=98.40 Aligned_cols=107 Identities=16% Similarity=0.140 Sum_probs=85.3
Q ss_pred CCCCCCEEEEEecCCCccHHHHHhhhCCCcEEEEEeCChHHHHHHHHHHHcC-CCeEEEEccCCCCccc--ccCCCcEeE
Q 021911 140 WIKPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKR-TNVIPIIEDARHPAKY--RMLVGMVDV 216 (305)
Q Consensus 140 ~~~~g~~VLDlG~G~G~~t~~la~~~~~~~~V~avD~s~~~~~~l~~~a~~~-~nI~~~~~D~~~~~~~--~~~~~~fD~ 216 (305)
.++++..|||++||+|..+.++++.+ +.++|+++|.++.++..+.+..+.. .++.+++.++.+.... .....+||.
T Consensus 20 ~~~~~~~~lD~t~G~Gghs~~il~~~-~~~~vi~~D~d~~~l~~a~~~l~~~~~r~~~~~~~f~~~~~~~~~~~~~~vdg 98 (192)
T d1m6ya2 20 KPEDEKIILDCTVGEGGHSRAILEHC-PGCRIIGIDVDSEVLRIAEEKLKEFSDRVSLFKVSYREADFLLKTLGIEKVDG 98 (192)
T ss_dssp CCCTTCEEEETTCTTSHHHHHHHHHC-TTCEEEEEESCHHHHHHHHHHTGGGTTTEEEEECCGGGHHHHHHHTTCSCEEE
T ss_pred CCCCCCEEEEecCCCcHHHHHHHhcC-CCCeEEEeechHHHHHHHHHhhccccccccchhHHHhhHHHHHHHcCCCCcce
Confidence 58899999999999999999999997 6789999999995555554444443 5899999998775432 223579999
Q ss_pred EEEeCCC------------hhHHHHHHHHHhccCCCCcEEEEEE
Q 021911 217 IFSDVAQ------------PDQARILALNASYFLKAGGHFVISI 248 (305)
Q Consensus 217 V~~d~~~------------~~~~~~l~~~a~~~LkpGG~lv~s~ 248 (305)
|+.|..+ ..+.+.|. .+.++|+|+|.+++.+
T Consensus 99 Il~DlGvSs~Qld~~~r~~~~~~~~L~-~a~~~Lk~gG~l~ii~ 141 (192)
T d1m6ya2 99 ILMDLGVSTYQLKGENRELENLKEFLK-KAEDLLNPGGRIVVIS 141 (192)
T ss_dssp EEEECSCCHHHHHTSHTHHHHHHHHHH-HGGGGEEEEEEEEEEE
T ss_pred eeeccchhHhhhhhhhccchhHHHHHH-HHHHhcCCCCeeeeec
Confidence 9999773 23556676 8999999999999887
|
| >d1u2za_ c.66.1.31 (A:) Catalytic, N-terminal domain of histone methyltransferase Dot1l {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Catalytic, N-terminal domain of histone methyltransferase Dot1l domain: Catalytic, N-terminal domain of histone methyltransferase Dot1l species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.15 E-value=4.4e-11 Score=110.60 Aligned_cols=117 Identities=15% Similarity=0.164 Sum_probs=81.0
Q ss_pred HHHHHHHccccccCCCCCCEEEEEecCCCccHHHHHhhhCCCcEEEEEeCChHHHHHHHHHHHcC-----------CCeE
Q 021911 127 KLAAAVLGGVDNIWIKPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKR-----------TNVI 195 (305)
Q Consensus 127 ~l~a~ll~~l~~~~~~~g~~VLDlG~G~G~~t~~la~~~~~~~~V~avD~s~~~~~~l~~~a~~~-----------~nI~ 195 (305)
.+...++ +.+.++++++|||||||+|..+..+|..++ ..+|++||+|+.+++.+.+++++. ..+.
T Consensus 203 ~~i~~Il---~~l~Lkpgd~fLDLGCG~G~~vl~aA~~~g-~~~v~GIDiS~~~i~~Ak~~~~e~~~~~~~~g~~~~~~~ 278 (406)
T d1u2za_ 203 NFLSDVY---QQCQLKKGDTFMDLGSGVGNCVVQAALECG-CALSFGCEIMDDASDLTILQYEELKKRCKLYGMRLNNVE 278 (406)
T ss_dssp HHHHHHH---HHTTCCTTCEEEEESCTTSHHHHHHHHHHC-CSEEEEEECCHHHHHHHHHHHHHHHHHHHHTTBCCCCEE
T ss_pred HHHHHHH---HHhCCCCCCEEEeCCCCCcHHHHHHHHHcC-CCeEEEEeCCHHHHHHHHHHHHHHhhhhhhhccccccce
Confidence 3444443 445799999999999999999999999874 348999999996655544444321 2333
Q ss_pred E-EEccCCCCcccccCCCcEeEEEEeCC--ChhHHHHHHHHHhccCCCCcEEEEEE
Q 021911 196 P-IIEDARHPAKYRMLVGMVDVIFSDVA--QPDQARILALNASYFLKAGGHFVISI 248 (305)
Q Consensus 196 ~-~~~D~~~~~~~~~~~~~fD~V~~d~~--~~~~~~~l~~~a~~~LkpGG~lv~s~ 248 (305)
+ +..|+...+........+|+|+++.. .++....|. ++++.|||||+|+.+.
T Consensus 279 ~~~~~~f~~~~~~d~~~~~adVV~inn~~f~~~l~~~L~-ei~r~LKPGGrIVs~~ 333 (406)
T d1u2za_ 279 FSLKKSFVDNNRVAELIPQCDVILVNNFLFDEDLNKKVE-KILQTAKVGCKIISLK 333 (406)
T ss_dssp EEESSCSTTCHHHHHHGGGCSEEEECCTTCCHHHHHHHH-HHHTTCCTTCEEEESS
T ss_pred eeeeechhhccccccccccceEEEEecccCchHHHHHHH-HHHHhcCCCcEEEEec
Confidence 3 34555544433223457899998644 455666676 9999999999998754
|
| >d1wy7a1 c.66.1.32 (A:4-204) Hypothetical protein PH1948 {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Ta1320-like domain: Hypothetical protein PH1948 species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=99.13 E-value=6.9e-11 Score=99.41 Aligned_cols=91 Identities=18% Similarity=0.075 Sum_probs=66.7
Q ss_pred hhHHHHHHHccccccCCCCCCEEEEEecCCCccHHHHHhhhCCCcEEEEEeCChHHHHHHHHHHHcC-CCeEEEEccCCC
Q 021911 125 RSKLAAAVLGGVDNIWIKPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKR-TNVIPIIEDARH 203 (305)
Q Consensus 125 ~s~l~a~ll~~l~~~~~~~g~~VLDlG~G~G~~t~~la~~~~~~~~V~avD~s~~~~~~l~~~a~~~-~nI~~~~~D~~~ 203 (305)
.+.+++.++........-.+.+|||+|||+|.++..++.. ....|++||+|+.+++.+.++++.. .++.+++.|+..
T Consensus 28 p~~~a~~~~~~~~~~~dl~g~~vLDlg~GtG~l~i~a~~~--g~~~v~~vdi~~~~~~~a~~N~~~~~~~~~~~~~d~~~ 105 (201)
T d1wy7a1 28 PGNAASELLWLAYSLGDIEGKVVADLGAGTGVLSYGALLL--GAKEVICVEVDKEAVDVLIENLGEFKGKFKVFIGDVSE 105 (201)
T ss_dssp CHHHHHHHHHHHHHTTSSTTCEEEEETCTTCHHHHHHHHT--TCSEEEEEESCHHHHHHHHHHTGGGTTSEEEEESCGGG
T ss_pred CHHHHHHHHHHHHhcCCCCCCEEEECcCcchHHHHHHHHc--CCCEEEEEcCcHHHHHHHHHHHHHcCCCceEEECchhh
Confidence 3455555543222223346789999999999999988765 3458999999997777776666554 567888888765
Q ss_pred CcccccCCCcEeEEEEeCCC
Q 021911 204 PAKYRMLVGMVDVIFSDVAQ 223 (305)
Q Consensus 204 ~~~~~~~~~~fD~V~~d~~~ 223 (305)
+ ..+||+|++|+|.
T Consensus 106 ~------~~~fD~Vi~nPP~ 119 (201)
T d1wy7a1 106 F------NSRVDIVIMNPPF 119 (201)
T ss_dssp C------CCCCSEEEECCCC
T ss_pred h------CCcCcEEEEcCcc
Confidence 4 4689999999994
|
| >d1oria_ c.66.1.6 (A:) Protein arginine N-methyltransferase 1, PRMT1 {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Arginine methyltransferase domain: Protein arginine N-methyltransferase 1, PRMT1 species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.12 E-value=1.2e-10 Score=104.50 Aligned_cols=99 Identities=20% Similarity=0.167 Sum_probs=74.3
Q ss_pred CCCCCEEEEEecCCCccHHHHHhhhCCCcEEEEEeCChHHHHHHHHHHHcC---CCeEEEEccCCCCcccccCCCcEeEE
Q 021911 141 IKPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKR---TNVIPIIEDARHPAKYRMLVGMVDVI 217 (305)
Q Consensus 141 ~~~g~~VLDlG~G~G~~t~~la~~~~~~~~V~avD~s~~~~~~l~~~a~~~---~nI~~~~~D~~~~~~~~~~~~~fD~V 217 (305)
+.++++|||||||+|.++..+|+. ...+|++||.|+.. ..+.+.++.+ .+|.+++.|+.+... ...+||+|
T Consensus 31 ~~~~~~VLDiGcG~G~ls~~aa~~--Ga~~V~avd~s~~~-~~a~~~~~~n~~~~~v~~~~~~~~~~~~---~~~~~D~i 104 (316)
T d1oria_ 31 LFKDKVVLDVGSGTGILCMFAAKA--GARKVIGIECSSIS-DYAVKIVKANKLDHVVTIIKGKVEEVEL---PVEKVDII 104 (316)
T ss_dssp HHTTCEEEEETCTTSHHHHHHHHT--TCSEEEEEECSTTH-HHHHHHHHHTTCTTTEEEEESCTTTCCC---SSSCEEEE
T ss_pred cCCcCEEEEEecCCcHHHHHHHHh--CCCEEEEEcCcHHH-hhhhhHHHHhCCccccceEeccHHHccc---ccceeEEE
Confidence 457899999999999999988886 33589999999853 3444444433 679999999988753 24799999
Q ss_pred EEeCC-----Ch-hHHHHHHHHHhccCCCCcEEEE
Q 021911 218 FSDVA-----QP-DQARILALNASYFLKAGGHFVI 246 (305)
Q Consensus 218 ~~d~~-----~~-~~~~~l~~~a~~~LkpGG~lv~ 246 (305)
+++.. .. ....++. .+.++|||+|.++-
T Consensus 105 vs~~~~~~l~~e~~~~~~l~-~~~r~Lkp~G~iiP 138 (316)
T d1oria_ 105 ISEWMGYCLFYESMLNTVLH-ARDKWLAPDGLIFP 138 (316)
T ss_dssp EECCCBBTBTBTCCHHHHHH-HHHHHEEEEEEEES
T ss_pred eeeeeeeeeccHHHHHHHHH-HHHhcCCCCeEEEe
Confidence 98655 12 3444554 88899999999863
|
| >d1nv8a_ c.66.1.30 (A:) N5-glutamine methyltransferase, HemK {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: N5-glutamine methyltransferase, HemK domain: N5-glutamine methyltransferase, HemK species: Thermotoga maritima [TaxId: 2336]
Probab=99.10 E-value=2.7e-10 Score=99.91 Aligned_cols=141 Identities=16% Similarity=0.162 Sum_probs=95.7
Q ss_pred cCCccccCcceeEeecCCCceeeeeecCchhhHHHHHHHccccccCCCCCCEEEEEecCCCccHHHHHhhhCCCcEEEEE
Q 021911 95 VAGEAVYNEKRISVQNEDGTKVEYRIWNPFRSKLAAAVLGGVDNIWIKPGARVLYLGAASGTTVSHVSDIVGPNGVVYAV 174 (305)
Q Consensus 95 ~~~~~~y~e~~~~~~d~~~~~~~~~~~~~~~s~l~a~ll~~l~~~~~~~g~~VLDlG~G~G~~t~~la~~~~~~~~V~av 174 (305)
+.++..|....|.+... -..-.|....|+..++..+. ..+..+|||+|||+|..++.++.. +..+|+++
T Consensus 71 I~g~~~F~~~~f~v~~~------vlIPRpeTE~lv~~~~~~~~---~~~~~~vld~g~GsG~i~~~la~~--~~~~v~a~ 139 (271)
T d1nv8a_ 71 ILGEKEFMGLSFLVEEG------VFVPRPETEELVELALELIR---KYGIKTVADIGTGSGAIGVSVAKF--SDAIVFAT 139 (271)
T ss_dssp HHTEEEETTEEEECCTT------SCCCCTTHHHHHHHHHHHHH---HHTCCEEEEESCTTSHHHHHHHHH--SSCEEEEE
T ss_pred hcCcEEEeeeEEEEecC------ccCchhhhhhhhhhhhhhhc---cccccEEEEeeeeeehhhhhhhhc--ccceeeec
Confidence 44566666666666542 12234445666666654332 233468999999999999998865 67899999
Q ss_pred eCChHHHHHHHHHHHcC---CCeEEEEccCCCCcccccCCCcEeEEEEeCCC--------------hh--------HHHH
Q 021911 175 EFSHRSGRDLVNMAKKR---TNVIPIIEDARHPAKYRMLVGMVDVIFSDVAQ--------------PD--------QARI 229 (305)
Q Consensus 175 D~s~~~~~~l~~~a~~~---~nI~~~~~D~~~~~~~~~~~~~fD~V~~d~~~--------------~~--------~~~~ 229 (305)
|+|+.++.-+.+++++. .++.+...|+..+... ...+||+|++|+|. |. -..+
T Consensus 140 Dis~~Al~~A~~Na~~~~~~~~~~i~~~~~~~~~~~--~~~~fDlIVsNPPYI~~~~~l~~~~~~EP~~AL~gg~dGl~~ 217 (271)
T d1nv8a_ 140 DVSSKAVEIARKNAERHGVSDRFFVRKGEFLEPFKE--KFASIEMILSNPPYVKSSAHLPKDVLFEPPEALFGGEDGLDF 217 (271)
T ss_dssp ESCHHHHHHHHHHHHHTTCTTSEEEEESSTTGGGGG--GTTTCCEEEECCCCBCGGGSCTTSCCCSCHHHHBCTTTSCHH
T ss_pred hhhhhHHHHHHHHHHHcCCCceeEEeeccccccccc--ccCcccEEEEcccccCcccccceeeeeccccccccccchHHH
Confidence 99998777777777665 3566777888765432 24689999999991 11 0122
Q ss_pred HHHHHhccCCCCcEEEEEE
Q 021911 230 LALNASYFLKAGGHFVISI 248 (305)
Q Consensus 230 l~~~a~~~LkpGG~lv~s~ 248 (305)
+..-+.++|+|+|+|++.+
T Consensus 218 ~r~i~~~~L~~~G~l~~Ei 236 (271)
T d1nv8a_ 218 YREFFGRYDTSGKIVLMEI 236 (271)
T ss_dssp HHHHHHHCCCTTCEEEEEC
T ss_pred HHHHHHHhcCCCCEEEEEE
Confidence 2222457899999999986
|
| >d2ifta1 c.66.1.46 (A:11-193) Putative methylase HI0767 {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: YhhF-like domain: Putative methylase HI0767 species: Haemophilus influenzae [TaxId: 727]
Probab=99.09 E-value=1e-10 Score=96.80 Aligned_cols=124 Identities=14% Similarity=0.056 Sum_probs=82.8
Q ss_pred CchhhHHHHHHHccccccCCCCCCEEEEEecCCCccHHHHHhhhCCCcEEEEEeCChHHHHHHHHHHHcC----CCeEEE
Q 021911 122 NPFRSKLAAAVLGGVDNIWIKPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKR----TNVIPI 197 (305)
Q Consensus 122 ~~~~s~l~a~ll~~l~~~~~~~g~~VLDlG~G~G~~t~~la~~~~~~~~V~avD~s~~~~~~l~~~a~~~----~nI~~~ 197 (305)
.|..+++-..+...|.. .-.+.+||||+||||.++++++.+ ....|+.||.+..+++.+.++++.. .....+
T Consensus 24 RPt~~~vrealFn~l~~--~~~~~~vLDlFaGsG~~glEalSR--GA~~v~fVE~~~~a~~~ik~Ni~~l~~~~~~~~~~ 99 (183)
T d2ifta1 24 RPTGDRVKETLFNWLMP--YIHQSECLDGFAGSGSLGFEALSR--QAKKVTFLELDKTVANQLKKNLQTLKCSSEQAEVI 99 (183)
T ss_dssp ----CHHHHHHHHHHHH--HHTTCEEEETTCTTCHHHHHHHHT--TCSEEEEECSCHHHHHHHHHHHHHTTCCTTTEEEE
T ss_pred CcCcHHHHHHHHHHhhh--hcccceEeecccCccceeeeeeee--cceeeEEeecccchhhhHhhHHhhhcccccccccc
Confidence 45566666666665542 135789999999999999999988 4569999999998877777666543 235666
Q ss_pred EccCCCCcccccCCCcEeEEEEeCCChh--HHHHHH-HHHhccCCCCcEEEEEEc
Q 021911 198 IEDARHPAKYRMLVGMVDVIFSDVAQPD--QARILA-LNASYFLKAGGHFVISIK 249 (305)
Q Consensus 198 ~~D~~~~~~~~~~~~~fD~V~~d~~~~~--~~~~l~-~~a~~~LkpGG~lv~s~~ 249 (305)
..|+...........+||+||+|||... ...++. ..-..+|+++|.+++.+.
T Consensus 100 ~~d~~~~l~~~~~~~~fDlIFlDPPY~~~~~~~~l~~l~~~~~L~~~~liiiE~~ 154 (183)
T d2ifta1 100 NQSSLDFLKQPQNQPHFDVVFLDPPFHFNLAEQAISLLCENNWLKPNALIYVETE 154 (183)
T ss_dssp CSCHHHHTTSCCSSCCEEEEEECCCSSSCHHHHHHHHHHHTTCEEEEEEEEEEEE
T ss_pred cccccccccccccCCcccEEEechhHhhhhHHHHHHHHHHhCCcCCCcEEEEEec
Confidence 6665443222222457999999999422 223333 122468999999999863
|
| >d2avda1 c.66.1.1 (A:44-262) COMT domain-containing protein 1, COMTD1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: COMT-like domain: COMT domain-containing protein 1, COMTD1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.09 E-value=1.6e-10 Score=98.44 Aligned_cols=107 Identities=14% Similarity=0.147 Sum_probs=86.2
Q ss_pred CCCCCEEEEEecCCCccHHHHHhhhCCCcEEEEEeCChHHHHHHHHHHHcC---CCeEEEEccCCCCccc---ccCCCcE
Q 021911 141 IKPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKR---TNVIPIIEDARHPAKY---RMLVGMV 214 (305)
Q Consensus 141 ~~~g~~VLDlG~G~G~~t~~la~~~~~~~~V~avD~s~~~~~~l~~~a~~~---~nI~~~~~D~~~~~~~---~~~~~~f 214 (305)
.....+|||+||++|..+..+|+.+.+.++|+++|.++.......+..++. ++|++++.|+.+..+. .....+|
T Consensus 57 ~~~~k~vLEiGt~~GyStl~~a~al~~~g~i~tie~~~~~~~~A~~~~~~ag~~~~i~~~~Gda~e~l~~~~~~~~~~~f 136 (219)
T d2avda1 57 LIQAKKALDLGTFTGYSALALALALPADGRVVTCEVDAQPPELGRPLWRQAEAEHKIDLRLKPALETLDELLAAGEAGTF 136 (219)
T ss_dssp HTTCCEEEEECCTTSHHHHHHHTTSCTTCEEEEEESCSHHHHHHHHHHHHTTCTTTEEEEESCHHHHHHHHHHTTCTTCE
T ss_pred ccCCCeEEEEechhhHHHHHHHHhCCCCceEEEEeechhHHHHHHHHHHhcCccceEEEEEeehhhcchhhhhhcccCCc
Confidence 344589999999999999999999877899999999997665555555433 6799999998664321 1124689
Q ss_pred eEEEEeCCChhHHHHHHHHHhccCCCCcEEEEEE
Q 021911 215 DVIFSDVAQPDQARILALNASYFLKAGGHFVISI 248 (305)
Q Consensus 215 D~V~~d~~~~~~~~~l~~~a~~~LkpGG~lv~s~ 248 (305)
|+||.|.....+...+. .+.++|+|||.+++--
T Consensus 137 D~ifiD~dk~~y~~~~~-~~~~lL~~GGvii~Dn 169 (219)
T d2avda1 137 DVAVVDADKENCSAYYE-RCLQLLRPGGILAVLR 169 (219)
T ss_dssp EEEEECSCSTTHHHHHH-HHHHHEEEEEEEEEEC
T ss_pred cEEEEeCCHHHHHHHHH-HHHHHhcCCcEEEEeC
Confidence 99999999888888887 8889999999999864
|
| >d2f8la1 c.66.1.45 (A:2-329) Hypothetical protein Lmo1582 {Listeria monocytogenes [TaxId: 1639]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: N-6 DNA Methylase-like domain: Hypothetical protein Lmo1582 species: Listeria monocytogenes [TaxId: 1639]
Probab=99.09 E-value=8.6e-10 Score=99.08 Aligned_cols=152 Identities=13% Similarity=0.058 Sum_probs=95.7
Q ss_pred CCCCCCEEEEEecCCCccHHHHHhhhC----CCcEEEEEeCChHHHHHHHHHHHc-CCCeEEEEccCCCCcccccCCCcE
Q 021911 140 WIKPGARVLYLGAASGTTVSHVSDIVG----PNGVVYAVEFSHRSGRDLVNMAKK-RTNVIPIIEDARHPAKYRMLVGMV 214 (305)
Q Consensus 140 ~~~~g~~VLDlG~G~G~~t~~la~~~~----~~~~V~avD~s~~~~~~l~~~a~~-~~nI~~~~~D~~~~~~~~~~~~~f 214 (305)
..+++.+|||.|||+|.+...+++.+. ...+++++|+++.+++-+...+.. ..++...+.|...... ..+|
T Consensus 114 ~~~~~~~vlDp~~GsG~~l~~~~~~l~~~~~~~~~~~g~di~~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~----~~~f 189 (328)
T d2f8la1 114 QKKKNVSILDPACGTANLLTTVINQLELKGDVDVHASGVDVDDLLISLALVGADLQRQKMTLLHQDGLANLL----VDPV 189 (328)
T ss_dssp TTCSEEEEEETTCTTSHHHHHHHHHHHTTSSCEEEEEEEESCHHHHHHHHHHHHHHTCCCEEEESCTTSCCC----CCCE
T ss_pred CCCCCCEEEeCCCCcchhHHHHHHHHHhccCccceEEEecccHHHHHHHHHHHHHhhhhhhhhccccccccc----cccc
Confidence 456778999999999999999887652 234799999999554332222221 2567777777655432 4689
Q ss_pred eEEEEeCCCh--------------------hHHHHHHHHHhccCCCCcEEEEEEcccccCCCCchhhhHHHHHHHHHHCC
Q 021911 215 DVIFSDVAQP--------------------DQARILALNASYFLKAGGHFVISIKANCIDSTVPAEAVFQSEVKKLQQDQ 274 (305)
Q Consensus 215 D~V~~d~~~~--------------------~~~~~l~~~a~~~LkpGG~lv~s~~~~~i~~~~~~~~v~~~~~~~l~~~G 274 (305)
|+|++|+|.. +...++...+.++|+|+|++++.++...+. ...... ..+.|.+.
T Consensus 190 D~vi~NPPy~~~~~~~~~~~~~~~~~~~~~~~~~~Fi~~~~~~Lk~~G~~~~I~p~~~l~-~~~~~~----lR~~L~~~- 263 (328)
T d2f8la1 190 DVVISDLPVGYYPDDENAKTFELCREEGHSFAHFLFIEQGMRYTKPGGYLFFLVPDAMFG-TSDFAK----VDKFIKKN- 263 (328)
T ss_dssp EEEEEECCCSEESCHHHHTTSTTCCSSSCEEHHHHHHHHHHHTEEEEEEEEEEEEGGGGG-STTHHH----HHHHHHHH-
T ss_pred cccccCCCCCCCccchhhhhcchhcccCcchHHHHHHHHHHHhcCCCCceEEEecCcccc-CchhHH----HHHHHHhC-
Confidence 9999999921 122233448999999999999988543322 222221 23344333
Q ss_pred CcEeEEeecCC--CC---CceEEEEEEEcCCC
Q 021911 275 FKPFEQVTLEP--FE---RDHACVVGGYRMPK 301 (305)
Q Consensus 275 f~~~e~~~l~p--~~---~~~~~vv~~~~~~~ 301 (305)
+.+..++.+.+ |. -.-.+++..+..++
T Consensus 264 ~~i~~ii~lp~~~F~~~~~~t~ilvl~K~~~~ 295 (328)
T d2f8la1 264 GHIEGIIKLPETLFKSEQARKSILILEKADVD 295 (328)
T ss_dssp EEEEEEEECCGGGSCC-CCCEEEEEEEECCTT
T ss_pred CcEEEEEECCccccCCCCCCeEEEEEECCCCC
Confidence 56666666532 32 24456666666544
|
| >d1mjfa_ c.66.1.17 (A:) Putative spermidine synthetase PF0127 (SpeE) {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Putative spermidine synthetase PF0127 (SpeE) species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=99.04 E-value=3.8e-09 Score=92.78 Aligned_cols=145 Identities=21% Similarity=0.183 Sum_probs=101.4
Q ss_pred CCCCEEEEEecCCCccHHHHHhhhCCCcEEEEEeCChHHHHHHHHHHHc----------------CCCeEEEEccCCCCc
Q 021911 142 KPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKK----------------RTNVIPIIEDARHPA 205 (305)
Q Consensus 142 ~~g~~VLDlG~G~G~~t~~la~~~~~~~~V~avD~s~~~~~~l~~~a~~----------------~~nI~~~~~D~~~~~ 205 (305)
....+||.||+|.|..+.++++. +..+|+.||+++ ++++.+++ .+++++++.|+....
T Consensus 71 ~~p~~vLiiG~G~G~~~~~~l~~--~~~~v~~VEiD~----~Vi~~a~~~f~~~~~~~~~~~~~~d~rv~i~~~Da~~~l 144 (276)
T d1mjfa_ 71 PKPKRVLVIGGGDGGTVREVLQH--DVDEVIMVEIDE----DVIMVSKDLIKIDNGLLEAMLNGKHEKAKLTIGDGFEFI 144 (276)
T ss_dssp SCCCEEEEEECTTSHHHHHHTTS--CCSEEEEEESCH----HHHHHHHHHTCTTTTHHHHHHTTCCSSEEEEESCHHHHH
T ss_pred CCCceEEEecCCchHHHHHHHHh--CCceEEEecCCH----HHHHHHHHhhhhccchhhhhhccCCCCceEEEChHHHHH
Confidence 34589999999999999998875 445899999999 44444432 267999999997664
Q ss_pred ccccCCCcEeEEEEeCCChh-------HHHHHHHHHhccCCCCcEEEEEEcccccCCCCchhhhHHHHHHHHHHCCCcEe
Q 021911 206 KYRMLVGMVDVIFSDVAQPD-------QARILALNASYFLKAGGHFVISIKANCIDSTVPAEAVFQSEVKKLQQDQFKPF 278 (305)
Q Consensus 206 ~~~~~~~~fD~V~~d~~~~~-------~~~~l~~~a~~~LkpGG~lv~s~~~~~i~~~~~~~~v~~~~~~~l~~~Gf~~~ 278 (305)
.. ..+||+|++|.+.+. ..+.+. .+.+.|+|+|.+++.. .+... ....+....+.|++. |..+
T Consensus 145 ~~---~~~yDvIi~D~~~~~~~~~~L~t~eF~~-~~~~~L~~~Gv~v~q~--~s~~~---~~~~~~~~~~tl~~~-F~~v 214 (276)
T d1mjfa_ 145 KN---NRGFDVIIADSTDPVGPAKVLFSEEFYR-YVYDALNNPGIYVTQA--GSVYL---FTDELISAYKEMKKV-FDRV 214 (276)
T ss_dssp HH---CCCEEEEEEECCCCC-----TTSHHHHH-HHHHHEEEEEEEEEEE--EETTT---SHHHHHHHHHHHHHH-CSEE
T ss_pred hc---cCCCCEEEEeCCCCCCCcccccCHHHHH-hhHhhcCCCceEEEec--CCcch---hHHHHHHHHHHHHhh-CCee
Confidence 32 468999999988432 234555 8999999999998865 22221 122344455666665 7666
Q ss_pred EE--eecCCCCCceEEEEEEEcCCCC
Q 021911 279 EQ--VTLEPFERDHACVVGGYRMPKK 302 (305)
Q Consensus 279 e~--~~l~p~~~~~~~vv~~~~~~~~ 302 (305)
.. +.+..|...+.++++.+...+.
T Consensus 215 ~~y~~~vP~y~~~w~f~~as~~~~~~ 240 (276)
T d1mjfa_ 215 YYYSFPVIGYASPWAFLVGVKGDIDF 240 (276)
T ss_dssp EEEEECCTTSSSSEEEEEEEESSCCT
T ss_pred EEEEecCcCCCCceEEEEEeCCCCCh
Confidence 54 3455677778888888765543
|
| >d1fp1d2 c.66.1.12 (D:129-372) Chalcone O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Plant O-methyltransferase, C-terminal domain domain: Chalcone O-methyltransferase species: Alfalfa (Medicago sativa) [TaxId: 3879]
Probab=99.03 E-value=3.3e-09 Score=91.56 Aligned_cols=128 Identities=13% Similarity=0.127 Sum_probs=89.0
Q ss_pred CCCCEEEEEecCCCccHHHHHhhhCCCcEEEEEeCChHHHHHHHHHHHcCCCeEEEEccCCCCcccccCCCcEeEEEEeC
Q 021911 142 KPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKRTNVIPIIEDARHPAKYRMLVGMVDVIFSDV 221 (305)
Q Consensus 142 ~~g~~VLDlG~G~G~~t~~la~~~~~~~~V~avD~s~~~~~~l~~~a~~~~nI~~~~~D~~~~~~~~~~~~~fD~V~~d~ 221 (305)
....+|||||||+|.++..+++.. |..+++.+|+.+ .++.+....+|+++..|+.+.. ...|+|++..
T Consensus 80 ~~~~~vlDiGGG~G~~~~~l~~~~-P~l~~~v~Dlp~-----vi~~~~~~~ri~~~~gd~~~~~------p~~D~~~l~~ 147 (244)
T d1fp1d2 80 EGISTLVDVGGGSGRNLELIISKY-PLIKGINFDLPQ-----VIENAPPLSGIEHVGGDMFASV------PQGDAMILKA 147 (244)
T ss_dssp TTCSEEEEETCTTSHHHHHHHHHC-TTCEEEEEECHH-----HHTTCCCCTTEEEEECCTTTCC------CCEEEEEEES
T ss_pred cCCcEEEEecCCCcHHHHHHHHHC-CCCeEEEecchh-----hhhccCCCCCeEEecCCccccc------ccceEEEEeh
Confidence 456899999999999999999986 788999999843 3444444478999999987542 3569998744
Q ss_pred C-----ChhHHHHHHHHHhccCCCCcEEEEEEcccccCCCCchhh----hH--------------HHH-HHHHHHCCCcE
Q 021911 222 A-----QPDQARILALNASYFLKAGGHFVISIKANCIDSTVPAEA----VF--------------QSE-VKKLQQDQFKP 277 (305)
Q Consensus 222 ~-----~~~~~~~l~~~a~~~LkpGG~lv~s~~~~~i~~~~~~~~----v~--------------~~~-~~~l~~~Gf~~ 277 (305)
. ..+..++|. ++++.|+|||+|++....-.......... .+ .++ .+.|+++||+.
T Consensus 148 vLh~~~de~~~~iL~-~~~~aL~pgg~llI~e~v~~~~~~~~~~~~~~~~~d~~m~~~~~g~ert~~e~~~ll~~AGF~~ 226 (244)
T d1fp1d2 148 VCHNWSDEKCIEFLS-NCHKALSPNGKVIIVEFILPEEPNTSEESKLVSTLDNLMFITVGGRERTEKQYEKLSKLSGFSK 226 (244)
T ss_dssp SGGGSCHHHHHHHHH-HHHHHEEEEEEEEEEEEEECSSCCSSHHHHHHHHHHHHHHHHHSCCCEEHHHHHHHHHHTTCSE
T ss_pred hhhhCCHHHHHHHHH-HHHHHcCCCcEEEEEEEEecCCCCCchHHHHHHHHHHHHHhhCCCcCCCHHHHHHHHHHcCCCc
Confidence 4 234556666 99999999999999762111111111111 00 122 45668999999
Q ss_pred eEEee
Q 021911 278 FEQVT 282 (305)
Q Consensus 278 ~e~~~ 282 (305)
++++.
T Consensus 227 v~v~~ 231 (244)
T d1fp1d2 227 FQVAC 231 (244)
T ss_dssp EEEEE
T ss_pred eEEEe
Confidence 88764
|
| >d2h00a1 c.66.1.54 (A:5-254) Methyltransferase 10 domain containing protein METT10D {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Methyltransferase 10 domain domain: Methyltransferase 10 domain containing protein METT10D species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.02 E-value=3.3e-09 Score=91.91 Aligned_cols=131 Identities=7% Similarity=-0.033 Sum_probs=89.0
Q ss_pred CCCCEEEEEecCCCccHHHHHhhhCCCcEEEEEeCChHHHHHHHHHHHcC---CCeEEEEccCCCCccc---ccCCCcEe
Q 021911 142 KPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKR---TNVIPIIEDARHPAKY---RMLVGMVD 215 (305)
Q Consensus 142 ~~g~~VLDlG~G~G~~t~~la~~~~~~~~V~avD~s~~~~~~l~~~a~~~---~nI~~~~~D~~~~~~~---~~~~~~fD 215 (305)
.+..+|||+|||+|..+..|+... +..+|+++|+|+.++.-+.++++.. .++.+++.+....... .....+||
T Consensus 60 ~~~~~~LDiGtGsg~I~~~l~~~~-~~~~~~~~Di~~~al~~A~~N~~~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~fD 138 (250)
T d2h00a1 60 STLRRGIDIGTGASCIYPLLGATL-NGWYFLATEVDDMCFNYAKKNVEQNNLSDLIKVVKVPQKTLLMDALKEESEIIYD 138 (250)
T ss_dssp CCCCEEEEESCTTTTHHHHHHHHH-HCCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCTTCSSTTTSTTCCSCCBS
T ss_pred cccceEEEeCCCchHHHHHHHHhC-CCccccceecCHHHHHHHHHHHHHhCCCcceeeeeeccHHhhhhhhhhcccCcee
Confidence 345699999999999999999887 5789999999997776666666654 4677777665433211 11235899
Q ss_pred EEEEeCCCh--------------------------------------hHHHHHHHHHhccCCCCcEEEEEEcccccCCCC
Q 021911 216 VIFSDVAQP--------------------------------------DQARILALNASYFLKAGGHFVISIKANCIDSTV 257 (305)
Q Consensus 216 ~V~~d~~~~--------------------------------------~~~~~l~~~a~~~LkpGG~lv~s~~~~~i~~~~ 257 (305)
+|+||+|.. ...+++. ++..+++..|++.+.+- ...
T Consensus 139 ~ivsNPPY~~~~e~~~~~~~~k~~~~~p~~~~~~~~~el~~~gGe~~F~~~ii~-es~~~~~~~g~~t~~ig-----~~~ 212 (250)
T d2h00a1 139 FCMCNPPFFANQLEAKGVNSRNPRRPPPSSVNTGGITEIMAEGGELEFVKRIIH-DSLQLKKRLRWYSCMLG-----KKC 212 (250)
T ss_dssp EEEECCCCC-------------------------CTTTTHHHHTHHHHHHHHHH-HHHHHGGGBSCEEEEES-----STT
T ss_pred EEEecCcccccchhhhccccccccccCchhhcCccccccccccchhhHHHHHHH-HHHHHhhcCcEEEEEec-----chh
Confidence 999999910 0223444 67788999888876651 111
Q ss_pred chhhhHHHHHHHHHHCCCcEeEEeec
Q 021911 258 PAEAVFQSEVKKLQQDQFKPFEQVTL 283 (305)
Q Consensus 258 ~~~~v~~~~~~~l~~~Gf~~~e~~~l 283 (305)
. +......|++.|+.-++.+++
T Consensus 213 ~----l~~i~~~L~~~g~~~i~~ie~ 234 (250)
T d2h00a1 213 S----LAPLKEELRIQGVPKVTYTEF 234 (250)
T ss_dssp S----HHHHHHHHHHTTCSEEEEEEE
T ss_pred h----HHHHHHHHHHcCCCeEEEEEe
Confidence 1 122246677888876666554
|
| >d2cl5a1 c.66.1.1 (A:3-216) Catechol O-methyltransferase, COMT {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: COMT-like domain: Catechol O-methyltransferase, COMT species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.00 E-value=4.1e-10 Score=95.51 Aligned_cols=103 Identities=17% Similarity=0.197 Sum_probs=76.5
Q ss_pred CCCEEEEEecCCCccHHHHHhhhCCCcEEEEEeCChHHHHHHHHHHHcC---CCeEEEEccCCCCccc---ccCCCcEeE
Q 021911 143 PGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKR---TNVIPIIEDARHPAKY---RMLVGMVDV 216 (305)
Q Consensus 143 ~g~~VLDlG~G~G~~t~~la~~~~~~~~V~avD~s~~~~~~l~~~a~~~---~nI~~~~~D~~~~~~~---~~~~~~fD~ 216 (305)
...+|||+||++|..+..+|+.+.+.++|+++|+++...+.+.+..++. .+|++++.|+.+..+. .....+||+
T Consensus 56 kpk~ILEiGt~~G~Sti~la~al~~~g~v~sid~~~~~~~~a~~~~~~~gl~~~i~l~~Gd~~e~l~~l~~~~~~~~~D~ 135 (214)
T d2cl5a1 56 SPSLVLELGAYCGYSAVRMARLLQPGARLLTMEMNPDYAAITQQMLNFAGLQDKVTILNGASQDLIPQLKKKYDVDTLDM 135 (214)
T ss_dssp CCSEEEEECCTTSHHHHHHHTTCCTTCEEEEEESCHHHHHHHHHHHHHHTCGGGEEEEESCHHHHGGGHHHHSCCCCEEE
T ss_pred CCCEEEEEccCchhHHHHHHHhCCCccEEEEEeccHHHHHHHHHHHHHcCCCccceeeeccccccccchhhcccccccce
Confidence 3479999999999999999998877789999999996655544444332 5799999998664321 112468999
Q ss_pred EEEeCCChhHHH--HHHHHHhccCCCCcEEEE
Q 021911 217 IFSDVAQPDQAR--ILALNASYFLKAGGHFVI 246 (305)
Q Consensus 217 V~~d~~~~~~~~--~l~~~a~~~LkpGG~lv~ 246 (305)
|++|........ .+. ++.++|||||.|++
T Consensus 136 ifiD~~~~~~~~~~~l~-~~~~lLkpGGvIv~ 166 (214)
T d2cl5a1 136 VFLDHWKDRYLPDTLLL-EKCGLLRKGTVLLA 166 (214)
T ss_dssp EEECSCGGGHHHHHHHH-HHTTCEEEEEEEEE
T ss_pred eeecccccccccHHHHH-HHhCccCCCcEEEE
Confidence 999976544332 344 67899999997665
|
| >d1susa1 c.66.1.1 (A:21-247) Caffeoyl-CoA O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: COMT-like domain: Caffeoyl-CoA O-methyltransferase species: Alfalfa (Medicago sativa) [TaxId: 3879]
Probab=98.97 E-value=4.4e-10 Score=96.06 Aligned_cols=105 Identities=14% Similarity=0.101 Sum_probs=85.4
Q ss_pred CCCCEEEEEecCCCccHHHHHhhhCCCcEEEEEeCChHHHHHHHHHHHcC---CCeEEEEccCCCCcccc----cCCCcE
Q 021911 142 KPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKR---TNVIPIIEDARHPAKYR----MLVGMV 214 (305)
Q Consensus 142 ~~g~~VLDlG~G~G~~t~~la~~~~~~~~V~avD~s~~~~~~l~~~a~~~---~nI~~~~~D~~~~~~~~----~~~~~f 214 (305)
....+|||+|+++|..+..+|+.+.+.++|+++|.++.....+.+..++. ++|++++.|+.+..+.- ....+|
T Consensus 58 ~~~k~iLEiGT~~GyStl~la~al~~~g~v~tie~~~~~~~~A~~~~~~~g~~~~i~~~~g~a~~~L~~l~~~~~~~~~f 137 (227)
T d1susa1 58 INAKNTMEIGVYTGYSLLATALAIPEDGKILAMDINKENYELGLPVIKKAGVDHKIDFREGPALPVLDEMIKDEKNHGSY 137 (227)
T ss_dssp HTCCEEEEECCGGGHHHHHHHHHSCTTCEEEEEESCCHHHHHHHHHHHHTTCGGGEEEEESCHHHHHHHHHHCGGGTTCB
T ss_pred cCCCcEEEecchhhhhHHHHHhhCCCCcEEEEEeccchhHHHHHHHHHHhccccceeeeehHHHHHHHHHHhccccCCce
Confidence 34589999999999999999999877899999999997766665555543 57999999986553210 124589
Q ss_pred eEEEEeCCChhHHHHHHHHHhccCCCCcEEEEE
Q 021911 215 DVIFSDVAQPDQARILALNASYFLKAGGHFVIS 247 (305)
Q Consensus 215 D~V~~d~~~~~~~~~l~~~a~~~LkpGG~lv~s 247 (305)
|+||+|.........+. .+.++|+|||.|++-
T Consensus 138 D~iFiDa~k~~y~~~~e-~~~~ll~~gGiii~D 169 (227)
T d1susa1 138 DFIFVDADKDNYLNYHK-RLIDLVKVGGVIGYD 169 (227)
T ss_dssp SEEEECSCSTTHHHHHH-HHHHHBCTTCCEEEE
T ss_pred eEEEeccchhhhHHHHH-HHHhhcCCCcEEEEc
Confidence 99999999888888887 888999999999986
|
| >d1uira_ c.66.1.17 (A:) Spermidine synthase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Spermidine synthase species: Thermus thermophilus [TaxId: 274]
Probab=98.94 E-value=6.3e-09 Score=92.86 Aligned_cols=150 Identities=15% Similarity=0.167 Sum_probs=98.3
Q ss_pred CCCEEEEEecCCCccHHHHHhhhCCCcEEEEEeCChHHHHHHHHHHH-------cCCCeEEEEccCCCCcccccCCCcEe
Q 021911 143 PGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAK-------KRTNVIPIIEDARHPAKYRMLVGMVD 215 (305)
Q Consensus 143 ~g~~VLDlG~G~G~~t~~la~~~~~~~~V~avD~s~~~~~~l~~~a~-------~~~nI~~~~~D~~~~~~~~~~~~~fD 215 (305)
...+||.||.|.|..+.++++.. +..+|+.||+++..++-+.+... ..+++++++.|+...... ...+||
T Consensus 77 ~pk~VLiiG~G~G~~~~~ll~~~-~~~~v~~VEiD~~Vi~~a~~~f~~~~~~~~~d~rv~i~~~Da~~~l~~--~~~~yD 153 (312)
T d1uira_ 77 EPKRVLIVGGGEGATLREVLKHP-TVEKAVMVDIDGELVEVAKRHMPEWHQGAFDDPRAVLVIDDARAYLER--TEERYD 153 (312)
T ss_dssp CCCEEEEEECTTSHHHHHHTTST-TCCEEEEEESCHHHHHHHHHHCHHHHTTGGGCTTEEEEESCHHHHHHH--CCCCEE
T ss_pred CcceEEEeCCCchHHHHHHHhcC-CcceEEEecCCHHHHHHHHhcCcccccCccCCCceEEEEchHHHHhhh--cCCccc
Confidence 34799999999999999988763 45699999999954433332221 226899999999876543 256899
Q ss_pred EEEEeCCCh----------hHHHHHHHHHhccCCCCcEEEEEEcccccCCCCchhhhHHHHHHHHHHCCCcEeEEe--ec
Q 021911 216 VIFSDVAQP----------DQARILALNASYFLKAGGHFVISIKANCIDSTVPAEAVFQSEVKKLQQDQFKPFEQV--TL 283 (305)
Q Consensus 216 ~V~~d~~~~----------~~~~~l~~~a~~~LkpGG~lv~s~~~~~i~~~~~~~~v~~~~~~~l~~~Gf~~~e~~--~l 283 (305)
+|++|.+.| -..+.+. .+.+.|+|+|.|++.. .+... ....++....+.|++. |..+... .+
T Consensus 154 vIi~D~~dp~~~~~~~~~L~t~eF~~-~~~~~L~p~Gvlv~~~--~s~~~--~~~~~~~~i~~tl~~~-F~~V~~y~~~v 227 (312)
T d1uira_ 154 VVIIDLTDPVGEDNPARLLYTVEFYR-LVKAHLNPGGVMGMQT--GMILL--THHRVHPVVHRTVREA-FRYVRSYKNHI 227 (312)
T ss_dssp EEEEECCCCBSTTCGGGGGSSHHHHH-HHHHTEEEEEEEEEEE--EEECC-----CHHHHHHHHHHTT-CSEEEEEEEEE
T ss_pred EEEEeCCCcccccchhhhhhhHHHHH-HHHHhcCCCceEEEec--CCccc--chHHHHHHHHHHHHHh-CceEEEEEeee
Confidence 999988522 1345565 8999999999998865 12111 1122223333455544 7766543 24
Q ss_pred CCCCCceEEEEEEEcCCC
Q 021911 284 EPFERDHACVVGGYRMPK 301 (305)
Q Consensus 284 ~p~~~~~~~vv~~~~~~~ 301 (305)
..|...+.+++|.+...+
T Consensus 228 Ps~~~~w~f~~aS~~~~p 245 (312)
T d1uira_ 228 PGFFLNFGFLLASDAFDP 245 (312)
T ss_dssp GGGTEEEEEEEEESSSCT
T ss_pred CCcCCCCEeEEEeCCCCc
Confidence 445556778888876443
|
| >d2o07a1 c.66.1.17 (A:16-300) Spermidine synthase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Spermidine synthase species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.89 E-value=2.6e-08 Score=87.67 Aligned_cols=146 Identities=14% Similarity=0.102 Sum_probs=98.4
Q ss_pred CCEEEEEecCCCccHHHHHhhhCCCcEEEEEeCChHHHHHHHHHHH------cCCCeEEEEccCCCCcccccCCCcEeEE
Q 021911 144 GARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAK------KRTNVIPIIEDARHPAKYRMLVGMVDVI 217 (305)
Q Consensus 144 g~~VLDlG~G~G~~t~~la~~~~~~~~V~avD~s~~~~~~l~~~a~------~~~nI~~~~~D~~~~~~~~~~~~~fD~V 217 (305)
..+||-||.|.|..+..+.+.. +..+|+.||+++..++-+.+... ..++++++..|+...... ...+||+|
T Consensus 79 pk~vLiiGgG~G~~~~~~l~~~-~~~~v~~vEiD~~Vv~~a~~~~~~~~~~~~d~rv~i~~~Da~~~l~~--~~~~yDvI 155 (285)
T d2o07a1 79 PRKVLIIGGGDGGVLREVVKHP-SVESVVQCEIDEDVIQVSKKFLPGMAIGYSSSKLTLHVGDGFEFMKQ--NQDAFDVI 155 (285)
T ss_dssp CCEEEEEECTTSHHHHHHTTCT-TCCEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHHHHT--CSSCEEEE
T ss_pred cCeEEEeCCCchHHHHHHHHcC-CcceeeeccCCHHHHHHHHhhchhhccccCCCCceEEEccHHHHHhc--CCCCCCEE
Confidence 4899999999999999998763 34589999999944443333221 237899999999776543 24689999
Q ss_pred EEeCCChh-------HHHHHHHHHhccCCCCcEEEEEEcccccCCCCchhhhHHHHHHHHHHCCCcEeEE--eecCCCCC
Q 021911 218 FSDVAQPD-------QARILALNASYFLKAGGHFVISIKANCIDSTVPAEAVFQSEVKKLQQDQFKPFEQ--VTLEPFER 288 (305)
Q Consensus 218 ~~d~~~~~-------~~~~l~~~a~~~LkpGG~lv~s~~~~~i~~~~~~~~v~~~~~~~l~~~Gf~~~e~--~~l~p~~~ 288 (305)
++|...|. ..+.+. .+++.|+|+|.|++... +... ....+....+.|++. |..... ..+..|..
T Consensus 156 i~D~~~p~~~~~~L~t~eF~~-~~~~~L~~~Gi~v~q~~--s~~~---~~~~~~~~~~tl~~~-F~~v~~y~~~vP~~~~ 228 (285)
T d2o07a1 156 ITDSSDPMGPAESLFKESYYQ-LMKTALKEDGVLCCQGE--CQWL---HLDLIKEMRQFCQSL-FPVVAYAYCTIPTYPS 228 (285)
T ss_dssp EEECC-----------CHHHH-HHHHHEEEEEEEEEEEE--CTTT---CHHHHHHHHHHHHHH-CSEEEEEEEECTTSGG
T ss_pred EEcCCCCCCcccccccHHHHH-HHHHhcCCCCeEEEecc--chhh---hHHHHHHHHHHHHhc-CCeeeEEeeeeeecCC
Confidence 99987432 334455 78899999999998762 2111 223444555666555 776654 34556644
Q ss_pred -ceEEEEEEEcC
Q 021911 289 -DHACVVGGYRM 299 (305)
Q Consensus 289 -~~~~vv~~~~~ 299 (305)
.+.+++|.+..
T Consensus 229 g~w~f~~aSk~p 240 (285)
T d2o07a1 229 GQIGFMLCSKNP 240 (285)
T ss_dssp GEEEEEEEESST
T ss_pred CCeEEEEEECCc
Confidence 56778888753
|
| >d1inla_ c.66.1.17 (A:) Spermidine synthase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Spermidine synthase species: Thermotoga maritima [TaxId: 2336]
Probab=98.87 E-value=3.1e-08 Score=87.43 Aligned_cols=151 Identities=14% Similarity=0.110 Sum_probs=100.4
Q ss_pred CCCCCCEEEEEecCCCccHHHHHhhhCCCcEEEEEeCChHHHHHHHHHHH------cCCCeEEEEccCCCCcccccCCCc
Q 021911 140 WIKPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAK------KRTNVIPIIEDARHPAKYRMLVGM 213 (305)
Q Consensus 140 ~~~~g~~VLDlG~G~G~~t~~la~~~~~~~~V~avD~s~~~~~~l~~~a~------~~~nI~~~~~D~~~~~~~~~~~~~ 213 (305)
+..| .+||-||.|.|..+..+++.. +..+|++||+++..++-+.+... ..+++++++.|+...... ....
T Consensus 87 ~~~p-k~VLiiGgG~G~~~r~~l~~~-~~~~i~~VEIDp~Vi~~a~~~~~~~~~~~~d~rv~v~~~Da~~~l~~--~~~~ 162 (295)
T d1inla_ 87 HPNP-KKVLIIGGGDGGTLREVLKHD-SVEKAILCEVDGLVIEAARKYLKQTSCGFDDPRAEIVIANGAEYVRK--FKNE 162 (295)
T ss_dssp SSSC-CEEEEEECTTCHHHHHHTTST-TCSEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHHGGG--CSSC
T ss_pred CCCC-ceEEEecCCchHHHHHHHhcC-CCceEEEecCCHHHHHHHHHHHHhhcccccCCCcEEEhhhHHHHHhc--CCCC
Confidence 4444 899999999999999998863 44589999999954443332221 137899999999776543 3568
Q ss_pred EeEEEEeCCChh--------HHHHHHHHHhccCCCCcEEEEEEcccccCCCCchhhhHHHHHHHHHHCCCcEeEE--eec
Q 021911 214 VDVIFSDVAQPD--------QARILALNASYFLKAGGHFVISIKANCIDSTVPAEAVFQSEVKKLQQDQFKPFEQ--VTL 283 (305)
Q Consensus 214 fD~V~~d~~~~~--------~~~~l~~~a~~~LkpGG~lv~s~~~~~i~~~~~~~~v~~~~~~~l~~~Gf~~~e~--~~l 283 (305)
||+|++|.+.|. ..+.+. .+++.|+|+|.|++.. .+.. .....+....+.+++. |..... ..+
T Consensus 163 yDvIi~D~~dp~~~~~~~L~t~efy~-~~~~~L~~~Gi~v~q~--~sp~---~~~~~~~~i~~tl~~v-F~~v~~y~~~v 235 (295)
T d1inla_ 163 FDVIIIDSTDPTAGQGGHLFTEEFYQ-ACYDALKEDGVFSAET--EDPF---YDIGWFKLAYRRISKV-FPITRVYLGFM 235 (295)
T ss_dssp EEEEEEEC----------CCSHHHHH-HHHHHEEEEEEEEEEC--CCTT---TTHHHHHHHHHHHHHH-CSEEEEEEEEC
T ss_pred CCEEEEcCCCCCcCchhhhccHHHHH-HHHhhcCCCcEEEEec--CChh---hhhHHHHHHHHHHHhh-cceeEEEEeee
Confidence 999999987432 345565 8999999999998875 2211 1223345555666655 665554 344
Q ss_pred CCCC-CceEEEEEEEcCCC
Q 021911 284 EPFE-RDHACVVGGYRMPK 301 (305)
Q Consensus 284 ~p~~-~~~~~vv~~~~~~~ 301 (305)
..|. ..+.+++|.+...+
T Consensus 236 Ptyp~G~w~f~~aSk~~~p 254 (295)
T d1inla_ 236 TTYPSGMWSYTFASKGIDP 254 (295)
T ss_dssp TTSTTSEEEEEEEESSCCT
T ss_pred ceecCcccEEEEEeCCCCc
Confidence 5564 46677888876443
|
| >d2ih2a1 c.66.1.27 (A:21-243) DNA methylase TaqI, N-terminal domain {Thermus aquaticus [TaxId: 271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: DNA methylase TaqI, N-terminal domain domain: DNA methylase TaqI, N-terminal domain species: Thermus aquaticus [TaxId: 271]
Probab=98.86 E-value=2.8e-08 Score=83.36 Aligned_cols=100 Identities=20% Similarity=0.185 Sum_probs=74.5
Q ss_pred CCCCCCEEEEEecCCCccHHHHHhhhCCCcEEEEEeCChHHHHHHHHHHHcCCCeEEEEccCCCCcccccCCCcEeEEEE
Q 021911 140 WIKPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKRTNVIPIIEDARHPAKYRMLVGMVDVIFS 219 (305)
Q Consensus 140 ~~~~g~~VLDlG~G~G~~t~~la~~~~~~~~V~avD~s~~~~~~l~~~a~~~~nI~~~~~D~~~~~~~~~~~~~fD~V~~ 219 (305)
..+++.+|||.|||+|.++..+++.......++++|+++.+ ++. ......++.|...... ...||+|++
T Consensus 16 ~~~~~~~IlDp~~G~G~fl~~~~~~~~~~~~i~g~ei~~~~----~~~---~~~~~~~~~~~~~~~~----~~~fd~ii~ 84 (223)
T d2ih2a1 16 EAPRGGRVLEPACAHGPFLRAFREAHGTAYRFVGVEIDPKA----LDL---PPWAEGILADFLLWEP----GEAFDLILG 84 (223)
T ss_dssp CCCTTCEEEEETCTTCHHHHHHHHHHCSCSEEEEEESCTTT----CCC---CTTEEEEESCGGGCCC----SSCEEEEEE
T ss_pred CCCCcCEEEECCCchHHHHHHHHHhccccceEEeeecCHHH----Hhh---cccceeeeeehhcccc----ccccceecc
Confidence 46788999999999999999998877666789999999832 211 1345677778765542 368999999
Q ss_pred eCCC-------------------------------hhHHHHHHHHHhccCCCCcEEEEEEcc
Q 021911 220 DVAQ-------------------------------PDQARILALNASYFLKAGGHFVISIKA 250 (305)
Q Consensus 220 d~~~-------------------------------~~~~~~l~~~a~~~LkpGG~lv~s~~~ 250 (305)
|+|. .+....+..++.++||++|++++.++.
T Consensus 85 npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Fi~~al~~lk~~G~~~~I~p~ 146 (223)
T d2ih2a1 85 NPPYGIVGEASKYPIHVFKAVKDLYKKAFSTWKGKYNLYGAFLEKAVRLLKPGGVLVFVVPA 146 (223)
T ss_dssp CCCCCCBSCTTTCSBCCCHHHHHHHHHHCTTCCTTCCHHHHHHHHHHHHEEEEEEEEEEEEG
T ss_pred cCccccccccccccchhhhhhhhhhhhccccCCCcchHHHHHHHHHHHhcccCCceEEEEee
Confidence 9981 012233344889999999999999853
|
| >d1iy9a_ c.66.1.17 (A:) Spermidine synthase {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Spermidine synthase species: Bacillus subtilis [TaxId: 1423]
Probab=98.86 E-value=3.2e-08 Score=86.60 Aligned_cols=149 Identities=13% Similarity=0.118 Sum_probs=102.1
Q ss_pred CCCEEEEEecCCCccHHHHHhhhCCCcEEEEEeCChHHHHHHHHHHH------cCCCeEEEEccCCCCcccccCCCcEeE
Q 021911 143 PGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAK------KRTNVIPIIEDARHPAKYRMLVGMVDV 216 (305)
Q Consensus 143 ~g~~VLDlG~G~G~~t~~la~~~~~~~~V~avD~s~~~~~~l~~~a~------~~~nI~~~~~D~~~~~~~~~~~~~fD~ 216 (305)
...+||-||.|.|..+..+++.. +..+|+.||+++..++-+.+... ..+++.++..|+...... ...+||+
T Consensus 75 ~p~~vLiiGgG~G~~~~~~l~~~-~~~~i~~VEID~~Vi~~a~~~~~~~~~~~~d~r~~i~~~D~~~~l~~--~~~~yDv 151 (274)
T d1iy9a_ 75 NPEHVLVVGGGDGGVIREILKHP-SVKKATLVDIDGKVIEYSKKFLPSIAGKLDDPRVDVQVDDGFMHIAK--SENQYDV 151 (274)
T ss_dssp SCCEEEEESCTTCHHHHHHTTCT-TCSEEEEEESCHHHHHHHHHHCHHHHTTTTSTTEEEEESCSHHHHHT--CCSCEEE
T ss_pred CcceEEecCCCCcHHHHHHHhcC-CcceEEEecCCHHHHHHHHHhChhhcccccCCCeEEEechHHHHHhh--cCCCCCE
Confidence 34899999999999999998763 34699999999954443333221 127899999999776543 2468999
Q ss_pred EEEeCCChh-------HHHHHHHHHhccCCCCcEEEEEEcccccCCCCchhhhHHHHHHHHHHCCCcEeEEe--ecCCCC
Q 021911 217 IFSDVAQPD-------QARILALNASYFLKAGGHFVISIKANCIDSTVPAEAVFQSEVKKLQQDQFKPFEQV--TLEPFE 287 (305)
Q Consensus 217 V~~d~~~~~-------~~~~l~~~a~~~LkpGG~lv~s~~~~~i~~~~~~~~v~~~~~~~l~~~Gf~~~e~~--~l~p~~ 287 (305)
|++|.+.|. ..+.+. .+.+.|+|+|.++... .+... ....+....+.|++. |...... .+..|.
T Consensus 152 Ii~D~~~p~~~~~~L~t~eFy~-~~~~~L~~~Gv~v~q~--~s~~~---~~~~~~~i~~tl~~~-F~~v~~y~~~vPsy~ 224 (274)
T d1iy9a_ 152 IMVDSTEPVGPAVNLFTKGFYA-GIAKALKEDGIFVAQT--DNPWF---TPELITNVQRDVKEI-FPITKLYTANIPTYP 224 (274)
T ss_dssp EEESCSSCCSCCCCCSTTHHHH-HHHHHEEEEEEEEEEC--CCTTT---CHHHHHHHHHHHHTT-CSEEEEEEECCTTSG
T ss_pred EEEcCCCCCCcchhhccHHHHH-HHHhhcCCCceEEEec--CCccc---cHHHHHHHHHhhhhh-cCceEEEEEEeeecC
Confidence 999987442 445565 8889999999999875 22111 223445556667665 6655533 444563
Q ss_pred -CceEEEEEEEcCCC
Q 021911 288 -RDHACVVGGYRMPK 301 (305)
Q Consensus 288 -~~~~~vv~~~~~~~ 301 (305)
..+.+++|.++..+
T Consensus 225 ~g~w~f~~aS~~~~p 239 (274)
T d1iy9a_ 225 SGLWTFTIGSKKYDP 239 (274)
T ss_dssp GGCEEEEEEESSCCT
T ss_pred CCceEEEEEcCCCCc
Confidence 45788888876543
|
| >d2b2ca1 c.66.1.17 (A:3-314) Spermidine synthase {Caenorhabditis elegans [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Spermidine synthase species: Caenorhabditis elegans [TaxId: 6239]
Probab=98.79 E-value=4.2e-08 Score=87.12 Aligned_cols=145 Identities=14% Similarity=0.056 Sum_probs=96.5
Q ss_pred CCEEEEEecCCCccHHHHHhhhCCCcEEEEEeCChHHHHHHHHHHHc------CCCeEEEEccCCCCcccccCCCcEeEE
Q 021911 144 GARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKK------RTNVIPIIEDARHPAKYRMLVGMVDVI 217 (305)
Q Consensus 144 g~~VLDlG~G~G~~t~~la~~~~~~~~V~avD~s~~~~~~l~~~a~~------~~nI~~~~~D~~~~~~~~~~~~~fD~V 217 (305)
..+||-||.|.|..+..+++.. +-.+|+.||+++..++-+.+.... .+++++++.|+...... ...+||+|
T Consensus 107 pk~VLIiGgG~G~~~rellk~~-~v~~v~~VEID~~Vv~~a~~~~~~~~~~~~dprv~i~i~Da~~~l~~--~~~~yDvI 183 (312)
T d2b2ca1 107 PKRVLIIGGGDGGILREVLKHE-SVEKVTMCEIDEMVIDVAKKFLPGMSCGFSHPKLDLFCGDGFEFLKN--HKNEFDVI 183 (312)
T ss_dssp CCEEEEESCTTSHHHHHHTTCT-TCCEEEEECSCHHHHHHHHHHCTTTSGGGGCTTEEEECSCHHHHHHH--CTTCEEEE
T ss_pred CCeEEEeCCCchHHHHHHHHcC-CcceEEEEcccHHHHHHHHhhchhhccccCCCCeEEEEchHHHHHHh--CCCCCCEE
Confidence 4799999999999999998863 345899999999544444333221 27899999999776533 35789999
Q ss_pred EEeCCChh-------HHHHHHHHHhccCCCCcEEEEEEcccccCCCCchhhhHHHHHHHHHHCCCcEeEEe--ecCCCC-
Q 021911 218 FSDVAQPD-------QARILALNASYFLKAGGHFVISIKANCIDSTVPAEAVFQSEVKKLQQDQFKPFEQV--TLEPFE- 287 (305)
Q Consensus 218 ~~d~~~~~-------~~~~l~~~a~~~LkpGG~lv~s~~~~~i~~~~~~~~v~~~~~~~l~~~Gf~~~e~~--~l~p~~- 287 (305)
++|.+.|. ..+.+. .+.+.|+|+|.++... .+... ....+....+.+++. |..+... .+..|.
T Consensus 184 I~D~~dp~~~~~~L~t~eFy~-~~~~~L~~~Gi~v~q~--~s~~~---~~~~~~~i~~~l~~v-F~~v~~y~~~vPtyp~ 256 (312)
T d2b2ca1 184 ITDSSDPVGPAESLFGQSYYE-LLRDALKEDGILSSQG--ESVWL---HLPLIAHLVAFNRKI-FPAVTYAQSIVSTYPS 256 (312)
T ss_dssp EECCC-------------HHH-HHHHHEEEEEEEEEEC--CCTTT---CHHHHHHHHHHHHHH-CSEEEEEEEECTTSGG
T ss_pred EEcCCCCCCcchhhhhHHHHH-HHHhhcCCCcEEEEec--CChHH---hHHHHHHHHHHhhhc-cceEEEeeeccCCcCC
Confidence 99987432 334444 7899999999999875 22211 223445555666555 7665543 345563
Q ss_pred CceEEEEEEEc
Q 021911 288 RDHACVVGGYR 298 (305)
Q Consensus 288 ~~~~~vv~~~~ 298 (305)
..+.+++|.+.
T Consensus 257 G~w~f~~aSk~ 267 (312)
T d2b2ca1 257 GSMGYLICAKN 267 (312)
T ss_dssp GEEEEEEEESS
T ss_pred ccceeeEEECC
Confidence 35567888765
|
| >d1fp2a2 c.66.1.12 (A:109-352) Isoflavone O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Plant O-methyltransferase, C-terminal domain domain: Isoflavone O-methyltransferase species: Alfalfa (Medicago sativa) [TaxId: 3879]
Probab=98.78 E-value=4.1e-08 Score=84.49 Aligned_cols=130 Identities=14% Similarity=0.100 Sum_probs=88.9
Q ss_pred CCCEEEEEecCCCccHHHHHhhhCCCcEEEEEeCChHHHHHHHHHHHcCCCeEEEEccCCCCcccccCCCcEeEEEEeCC
Q 021911 143 PGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKRTNVIPIIEDARHPAKYRMLVGMVDVIFSDVA 222 (305)
Q Consensus 143 ~g~~VLDlG~G~G~~t~~la~~~~~~~~V~avD~s~~~~~~l~~~a~~~~nI~~~~~D~~~~~~~~~~~~~fD~V~~d~~ 222 (305)
...+|||+|||+|.++..+++.+ |..+++.+|+.+ .++.+...++|+++..|+.+.. ..+|++++...
T Consensus 80 ~~~~vvDvGGG~G~~~~~l~~~~-P~l~~~v~Dlp~-----vi~~~~~~~rv~~~~gD~f~~~------p~aD~~~l~~v 147 (244)
T d1fp2a2 80 GLESIVDVGGGTGTTAKIICETF-PKLKCIVFDRPQ-----VVENLSGSNNLTYVGGDMFTSI------PNADAVLLKYI 147 (244)
T ss_dssp TCSEEEEETCTTSHHHHHHHHHC-TTCEEEEEECHH-----HHTTCCCBTTEEEEECCTTTCC------CCCSEEEEESC
T ss_pred CceEEEEecCCccHHHHHHHHhC-CCCeEEEecCHH-----HHHhCcccCceEEEecCcccCC------CCCcEEEEEee
Confidence 34789999999999999999997 778999999843 4455555589999999997643 35799987443
Q ss_pred -----ChhHHHHHHHHHhccCCCC---cEEEEEEcccccCCCCchhh------------------hHHHHHHHHHHCCCc
Q 021911 223 -----QPDQARILALNASYFLKAG---GHFVISIKANCIDSTVPAEA------------------VFQSEVKKLQQDQFK 276 (305)
Q Consensus 223 -----~~~~~~~l~~~a~~~LkpG---G~lv~s~~~~~i~~~~~~~~------------------v~~~~~~~l~~~Gf~ 276 (305)
..+..++|. ++++.|+|| +++++...........+... -..+..+.++++||+
T Consensus 148 LHdw~d~~~~~iL~-~~~~al~pgg~~~~lli~e~~~~~~~~~~~~~~~~~~~dl~m~~~~G~ert~~e~~~ll~~AGf~ 226 (244)
T d1fp2a2 148 LHNWTDKDCLRILK-KCKEAVTNDGKRGKVTIIDMVIDKKKDENQVTQIKLLMDVNMACLNGKERNEEEWKKLFIEAGFQ 226 (244)
T ss_dssp GGGSCHHHHHHHHH-HHHHHHSGGGCCCEEEEEECEECTTTSCHHHHHHHHHHHHHGGGGTCCCEEHHHHHHHHHHTTCC
T ss_pred cccCChHHHHHHHH-HHHHHcCcccCCcEEEEEEeecCCCCCCchHHHHHHHHHHHHHhCCCcCCCHHHHHHHHHHcCCc
Confidence 334456676 999999998 67777652111111111000 011224566899999
Q ss_pred EeEEeecCC
Q 021911 277 PFEQVTLEP 285 (305)
Q Consensus 277 ~~e~~~l~p 285 (305)
..++..+..
T Consensus 227 ~~~i~~~~~ 235 (244)
T d1fp2a2 227 HYKISPLTG 235 (244)
T ss_dssp EEEEEEEET
T ss_pred eEEEEECCC
Confidence 998875543
|
| >d1xj5a_ c.66.1.17 (A:) Spermidine synthase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Spermidine synthase species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=98.74 E-value=1.5e-07 Score=82.84 Aligned_cols=148 Identities=12% Similarity=0.112 Sum_probs=98.7
Q ss_pred CCEEEEEecCCCccHHHHHhhhCCCcEEEEEeCChHHHHHHHHHH------HcCCCeEEEEccCCCCcccccCCCcEeEE
Q 021911 144 GARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMA------KKRTNVIPIIEDARHPAKYRMLVGMVDVI 217 (305)
Q Consensus 144 g~~VLDlG~G~G~~t~~la~~~~~~~~V~avD~s~~~~~~l~~~a------~~~~nI~~~~~D~~~~~~~~~~~~~fD~V 217 (305)
..+||-||-|.|..+..+++.. +-.+|+.||+++..++-+.+.. ...++++.+..|+...... ....+||+|
T Consensus 81 pk~VLiiGgG~G~~~r~~l~~~-~~~~i~~VEiD~~Vi~~~~~~f~~~~~~~~~~r~~i~~~Da~~~l~~-~~~~~yDvI 158 (290)
T d1xj5a_ 81 PKKVLVIGGGDGGVLREVARHA-SIEQIDMCEIDKMVVDVSKQFFPDVAIGYEDPRVNLVIGDGVAFLKN-AAEGSYDAV 158 (290)
T ss_dssp CCEEEEETCSSSHHHHHHTTCT-TCCEEEEEESCHHHHHHHHHHCHHHHGGGGSTTEEEEESCHHHHHHT-SCTTCEEEE
T ss_pred CcceEEecCCchHHHHHHHhcc-cceeeEEecCCHHHHHHHHHhchhhhccccCCCcEEEEccHHHHHhh-ccccCccEE
Confidence 3799999999999999998863 3458999999994444333322 1237899999998765432 123589999
Q ss_pred EEeCCChh-------HHHHHHHHHhccCCCCcEEEEEEcccccCCCCchhhhHHHHHHHHHHCCCcEeEE--eecCCCCC
Q 021911 218 FSDVAQPD-------QARILALNASYFLKAGGHFVISIKANCIDSTVPAEAVFQSEVKKLQQDQFKPFEQ--VTLEPFER 288 (305)
Q Consensus 218 ~~d~~~~~-------~~~~l~~~a~~~LkpGG~lv~s~~~~~i~~~~~~~~v~~~~~~~l~~~Gf~~~e~--~~l~p~~~ 288 (305)
++|...|. ..+.+. .+++.|+|+|.+++.+. +.. . ....+....+.+++........ ..+..|..
T Consensus 159 i~D~~dp~~~~~~L~t~eF~~-~~~~~L~~~Gi~v~q~~--s~~--~-~~~~~~~i~~~l~~vF~~~~~y~~~~vPty~~ 232 (290)
T d1xj5a_ 159 IVDSSDPIGPAKELFEKPFFQ-SVARALRPGGVVCTQAE--SLW--L-HMDIIEDIVSNCREIFKGSVNYAWTSVPTYPS 232 (290)
T ss_dssp EECCCCTTSGGGGGGSHHHHH-HHHHHEEEEEEEEEECC--CTT--T-CHHHHHHHHHHHHHHCSSCEEEEEEECTTSGG
T ss_pred EEcCCCCCCcchhhCCHHHHH-HHHHhcCCCcEEEEecC--CcH--H-HHHHHHHHHhhhhhhcccceeEeeEeeeeecC
Confidence 99988542 344555 88999999999999862 211 1 2334556667776663333332 34555543
Q ss_pred -ceEEEEEEEcC
Q 021911 289 -DHACVVGGYRM 299 (305)
Q Consensus 289 -~~~~vv~~~~~ 299 (305)
.+.++++.++.
T Consensus 233 g~w~f~~as~~~ 244 (290)
T d1xj5a_ 233 GVIGFMLCSTEG 244 (290)
T ss_dssp GEEEEEEEECSS
T ss_pred CceEEEEEeCCC
Confidence 56677777654
|
| >d1kyza2 c.66.1.12 (A:120-362) Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Plant O-methyltransferase, C-terminal domain domain: Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltransferase species: Alfalfa (Medicago sativa) [TaxId: 3879]
Probab=98.73 E-value=4.3e-08 Score=84.26 Aligned_cols=94 Identities=14% Similarity=0.186 Sum_probs=70.9
Q ss_pred CCCCEEEEEecCCCccHHHHHhhhCCCcEEEEEeCChHHHHHHHHHHHcCCCeEEEEccCCCCcccccCCCcEeEEEE-e
Q 021911 142 KPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKRTNVIPIIEDARHPAKYRMLVGMVDVIFS-D 220 (305)
Q Consensus 142 ~~g~~VLDlG~G~G~~t~~la~~~~~~~~V~avD~s~~~~~~l~~~a~~~~nI~~~~~D~~~~~~~~~~~~~fD~V~~-d 220 (305)
....+|||||||+|.++..+++.+ |..+++.+|+.+ .++.+...+++.++..|+.++.+ ..|++++ .
T Consensus 80 ~~~~~vvDvGGG~G~~~~~l~~~~-P~l~~~v~Dlp~-----vi~~~~~~~r~~~~~~d~~~~~P------~ad~~~l~~ 147 (243)
T d1kyza2 80 EGLKSLVDVGGGTGAVINTIVSKY-PTIKGINFDLPH-----VIEDAPSYPGVEHVGGDMFVSIP------KADAVFMKW 147 (243)
T ss_dssp SSCSEEEEETCTTSHHHHHHHHHC-TTSEEEEEECTT-----TTTTCCCCTTEEEEECCTTTCCC------CCSCEECSS
T ss_pred cCCcEEEEecCCCcHHHHHHHHHC-CCCeEEEcccHH-----hhhhcccCCceEEecccccccCC------CcceEEEEE
Confidence 345799999999999999999986 788999999975 23444555789999999976532 2344443 2
Q ss_pred CC----ChhHHHHHHHHHhccCCCCcEEEEEE
Q 021911 221 VA----QPDQARILALNASYFLKAGGHFVISI 248 (305)
Q Consensus 221 ~~----~~~~~~~l~~~a~~~LkpGG~lv~s~ 248 (305)
.. ..+...+|. ++++.|+|+|++++..
T Consensus 148 vlh~~~d~~~~~iL~-~~~~al~pgg~~li~d 178 (243)
T d1kyza2 148 ICHDWSDEHCLKFLK-NCYEALPDNGKVIVAE 178 (243)
T ss_dssp SSTTSCHHHHHHHHH-HHHHHCCSSSCEEEEE
T ss_pred EeecCCHHHHHHHHH-HHHHhcCCCceEEEEE
Confidence 22 344556666 9999999999999875
|
| >d1xdza_ c.66.1.20 (A:) Glucose-inhibited division protein B (GidB) {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Glucose-inhibited division protein B (GidB) domain: Glucose-inhibited division protein B (GidB) species: Bacillus subtilis [TaxId: 1423]
Probab=98.71 E-value=2.8e-07 Score=78.69 Aligned_cols=148 Identities=14% Similarity=0.026 Sum_probs=97.0
Q ss_pred CCCCEEEEEecCCCccHHHHHhhhCCCcEEEEEeCChHHHHHHHHHHHcC--CCeEEEEccCCCCcccccCCCcEeEEEE
Q 021911 142 KPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKR--TNVIPIIEDARHPAKYRMLVGMVDVIFS 219 (305)
Q Consensus 142 ~~g~~VLDlG~G~G~~t~~la~~~~~~~~V~avD~s~~~~~~l~~~a~~~--~nI~~~~~D~~~~~~~~~~~~~fD~V~~ 219 (305)
.+..+|+|+|+|.|.-...+|-.. |..+|+-||.+...+.-+....++- .|+++++..+............||+|++
T Consensus 69 ~~~~~ilDiGSGaGfPGi~laI~~-p~~~v~Lves~~KK~~FL~~v~~~L~L~n~~i~~~R~E~~~~~~~~~~~~D~v~s 147 (239)
T d1xdza_ 69 NQVNTICDVGAGAGFPSLPIKICF-PHLHVTIVDSLNKRITFLEKLSEALQLENTTFCHDRAETFGQRKDVRESYDIVTA 147 (239)
T ss_dssp GGCCEEEEECSSSCTTHHHHHHHC-TTCEEEEEESCHHHHHHHHHHHHHHTCSSEEEEESCHHHHTTCTTTTTCEEEEEE
T ss_pred cCCCeEEeecCCCchHHHHHHHhC-CCccceeecchHHHHHHHHHHHHHhCCCCcEEEeehhhhccccccccccceEEEE
Confidence 456899999999999999998764 7889999999986655554444432 7899888777554322222468999999
Q ss_pred eCCChhHHHHHHHHHhccCCCCcEEEEEEcccccCCCCchhhhHHHHHHHHHHCCCcEeEEee--cCCCCCceEEEEEEE
Q 021911 220 DVAQPDQARILALNASYFLKAGGHFVISIKANCIDSTVPAEAVFQSEVKKLQQDQFKPFEQVT--LEPFERDHACVVGGY 297 (305)
Q Consensus 220 d~~~~~~~~~l~~~a~~~LkpGG~lv~s~~~~~i~~~~~~~~v~~~~~~~l~~~Gf~~~e~~~--l~p~~~~~~~vv~~~ 297 (305)
-+..+. ..++. -+..+|+++|.+++.-- .....-..+....+...++++.+... +........+|+-.+
T Consensus 148 RAva~l-~~ll~-~~~~~l~~~g~~i~~KG-------~~~~~El~~a~~~~~~~~~~~~~v~~~~lp~~~~~r~lv~i~K 218 (239)
T d1xdza_ 148 RAVARL-SVLSE-LCLPLVKKNGLFVALKA-------ASAEEELNAGKKAITTLGGELENIHSFKLPIEESDRNIMVIRK 218 (239)
T ss_dssp ECCSCH-HHHHH-HHGGGEEEEEEEEEEEC-------C-CHHHHHHHHHHHHHTTEEEEEEEEEECTTTCCEEEEEEEEE
T ss_pred hhhhCH-HHHHH-HHhhhcccCCEEEEECC-------CChHHHHHHHHHHHHHcCCEEEEEEEEeCCCCCCCEEEEEEEE
Confidence 876654 33555 78899999999888741 11112122223445677888766544 323344445555444
Q ss_pred cC
Q 021911 298 RM 299 (305)
Q Consensus 298 ~~ 299 (305)
.+
T Consensus 219 ~~ 220 (239)
T d1xdza_ 219 IK 220 (239)
T ss_dssp CS
T ss_pred CC
Confidence 33
|
| >d2okca1 c.66.1.45 (A:9-433) Type I restriction enzyme StySJI M protein {Bacteroides thetaiotaomicron [TaxId: 818]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: N-6 DNA Methylase-like domain: Type I restriction enzyme StySJI M protein species: Bacteroides thetaiotaomicron [TaxId: 818]
Probab=98.67 E-value=6.7e-08 Score=89.62 Aligned_cols=152 Identities=16% Similarity=0.114 Sum_probs=92.2
Q ss_pred CCCCCCEEEEEecCCCccHHHHHhhhCCC------------cEEEEEeCChHHHHHHHHHHHcC----CCeEEEEccCCC
Q 021911 140 WIKPGARVLYLGAASGTTVSHVSDIVGPN------------GVVYAVEFSHRSGRDLVNMAKKR----TNVIPIIEDARH 203 (305)
Q Consensus 140 ~~~~g~~VLDlG~G~G~~t~~la~~~~~~------------~~V~avD~s~~~~~~l~~~a~~~----~nI~~~~~D~~~ 203 (305)
.+.++.+|||.+||+|.+...+.+.+... ..++++|+++....-+.-...-. .++.....|...
T Consensus 159 ~~~~~~~IlDPacGsG~fL~~a~~~~~~~~~~~~~~~~~~~~~l~g~E~~~~~~~la~~n~~l~g~~~~~~~i~~~d~l~ 238 (425)
T d2okca1 159 NPQMGETVCDPACGTGGFLLTAYDYMKGQSASKEKRDFLRDKALHGVDNTPLVVTLASMNLYLHGIGTDRSPIVCEDSLE 238 (425)
T ss_dssp CCCTTCCEEETTCTTCHHHHHHHHHHHTCC-CCHHHHHHHHTTEEEEESCHHHHHHHHHHHHHTTCCSSCCSEEECCTTT
T ss_pred cCcccceeeccccccCccHHHHHHHHHhhccchhhhhhhhhhhhhhhhccHHHHHHHHhhhhhcCCccccceeecCchhh
Confidence 56778999999999999999988876321 25999999984432221111111 345566777765
Q ss_pred CcccccCCCcEeEEEEeCCC-------------------hhHHHHHHHHHhccCCCCcEEEEEEcccccCCCCchhhhHH
Q 021911 204 PAKYRMLVGMVDVIFSDVAQ-------------------PDQARILALNASYFLKAGGHFVISIKANCIDSTVPAEAVFQ 264 (305)
Q Consensus 204 ~~~~~~~~~~fD~V~~d~~~-------------------~~~~~~l~~~a~~~LkpGG~lv~s~~~~~i~~~~~~~~v~~ 264 (305)
.. ....||+|++|||. .+..-++..++..+|+++|++++.++...+.... .. .
T Consensus 239 ~~----~~~~fD~Ii~NPPfg~~~~~~~~~~~~~~~~~~~~~~~~Fi~~~~~~Lk~~G~~~iI~p~~~L~~~~-~~---~ 310 (425)
T d2okca1 239 KE----PSTLVDVILANPPFGTRPAGSVDINRPDFYVETKNNQLNFLQHMMLMLKTGGRAAVVLPDNVLFEAG-AG---E 310 (425)
T ss_dssp SC----CSSCEEEEEECCCSSCCCTTCCCCCCTTSSSCCSCHHHHHHHHHHHHEEEEEEEEEEEEHHHHHCST-HH---H
T ss_pred hh----cccccceEEecCCCCCCccccchhhhhhcccccccHHHHHHHHHHHhcCCCCeEEEEechHHhhhhh-hH---H
Confidence 43 24689999999992 1122334448999999999999998543332221 11 1
Q ss_pred HHHHHHHHCCCcEeEEeecCC--C---CCceEEEEEEEcCC
Q 021911 265 SEVKKLQQDQFKPFEQVTLEP--F---ERDHACVVGGYRMP 300 (305)
Q Consensus 265 ~~~~~l~~~Gf~~~e~~~l~p--~---~~~~~~vv~~~~~~ 300 (305)
...++|.+. +.+..++.+.+ | .-.-++++..+.++
T Consensus 311 ~iR~~Ll~~-~~i~aIi~LP~~~F~~t~v~t~Ilil~K~k~ 350 (425)
T d2okca1 311 TIRKRLLQD-FNLHTILRLPTGIFYAQGVKANVLFFSKGQP 350 (425)
T ss_dssp HHHHHHHHH-EEEEEEEECCSSSSSSTTCCEEEEEEEESSC
T ss_pred HHHHHHHHh-cchhHhhcCCcccccCCCCCeEEEEEECCCC
Confidence 223444333 45566665533 2 22344555655544
|
| >d1jsxa_ c.66.1.20 (A:) Glucose-inhibited division protein B (GidB) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Glucose-inhibited division protein B (GidB) domain: Glucose-inhibited division protein B (GidB) species: Escherichia coli [TaxId: 562]
Probab=98.67 E-value=1.8e-07 Score=78.23 Aligned_cols=99 Identities=14% Similarity=0.133 Sum_probs=78.6
Q ss_pred CCCEEEEEecCCCccHHHHHhhhCCCcEEEEEeCChHHHHHHHHHHHcC--CCeEEEEccCCCCcccccCCCcEeEEEEe
Q 021911 143 PGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKR--TNVIPIIEDARHPAKYRMLVGMVDVIFSD 220 (305)
Q Consensus 143 ~g~~VLDlG~G~G~~t~~la~~~~~~~~V~avD~s~~~~~~l~~~a~~~--~nI~~~~~D~~~~~~~~~~~~~fD~V~~d 220 (305)
+..+|||+|+|.|.-+..+|-. .|+.+|+.||.+.+.+.-+.+.+++- .||++++..+.+... ..+||+|++-
T Consensus 65 ~~~~ilDiGsGaG~PGi~laI~-~p~~~~~Lves~~KK~~FL~~~~~~L~L~nv~v~~~R~E~~~~----~~~fD~V~sR 139 (207)
T d1jsxa_ 65 QGERFIDVGTGPGLPGIPLSIV-RPEAHFTLLDSLGKRVRFLRQVQHELKLENIEPVQSRVEEFPS----EPPFDGVISR 139 (207)
T ss_dssp CSSEEEEETCTTTTTHHHHHHH-CTTSEEEEEESCHHHHHHHHHHHHHTTCSSEEEEECCTTTSCC----CSCEEEEECS
T ss_pred cCCceeeeeccCCceeeehhhh-cccceEEEEecchHHHHHHHHHHHHcCCcceeeeccchhhhcc----ccccceehhh
Confidence 4579999999999999999975 47889999999987766666655554 689999999887642 3589999987
Q ss_pred CCChhHHHHHHHHHhccCCCCcEEEEEE
Q 021911 221 VAQPDQARILALNASYFLKAGGHFVISI 248 (305)
Q Consensus 221 ~~~~~~~~~l~~~a~~~LkpGG~lv~s~ 248 (305)
+..+. ..++. -+..+|+++|.+++.-
T Consensus 140 A~~~~-~~ll~-~~~~~l~~~g~~~~~K 165 (207)
T d1jsxa_ 140 AFASL-NDMVS-WCHHLPGEQGRFYALK 165 (207)
T ss_dssp CSSSH-HHHHH-HHTTSEEEEEEEEEEE
T ss_pred hhcCH-HHHHH-HHHHhcCCCcEEEEEC
Confidence 76543 33454 7789999999998875
|
| >d1qama_ c.66.1.24 (A:) rRNA adenine dimethylase {Bacillus subtilis, Ermc' [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: rRNA adenine dimethylase-like domain: rRNA adenine dimethylase species: Bacillus subtilis, Ermc' [TaxId: 1423]
Probab=98.64 E-value=1.9e-07 Score=79.79 Aligned_cols=96 Identities=13% Similarity=0.142 Sum_probs=72.0
Q ss_pred HHHHHHHccccccCCCCCCEEEEEecCCCccHHHHHhhhCCCcEEEEEeCChHHHHHHHHHHHcCCCeEEEEccCCCCcc
Q 021911 127 KLAAAVLGGVDNIWIKPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKRTNVIPIIEDARHPAK 206 (305)
Q Consensus 127 ~l~a~ll~~l~~~~~~~g~~VLDlG~G~G~~t~~la~~~~~~~~V~avD~s~~~~~~l~~~a~~~~nI~~~~~D~~~~~~ 206 (305)
.++..+++.+ .+.++++|||+|||+|.+|..|++.. ..|+|||++++.+..+.+.....+|++++++|+.+.+.
T Consensus 8 ~i~~~iv~~~---~~~~~d~VlEIGpG~G~LT~~Ll~~~---~~v~avE~D~~l~~~l~~~~~~~~n~~i~~~D~l~~~~ 81 (235)
T d1qama_ 8 HNIDKIMTNI---RLNEHDNIFEIGSGKGHFTLELVQRC---NFVTAIEIDHKLCKTTENKLVDHDNFQVLNKDILQFKF 81 (235)
T ss_dssp HHHHHHHTTC---CCCTTCEEEEECCTTSHHHHHHHHHS---SEEEEECSCHHHHHHHHHHTTTCCSEEEECCCGGGCCC
T ss_pred HHHHHHHHhc---CCCCCCeEEEECCCchHHHHHHHhCc---CceEEEeeccchHHHHHHHhhcccchhhhhhhhhhccc
Confidence 3455555433 57899999999999999999999873 48999999996655555544445899999999987642
Q ss_pred cccCCCcEeEEEEeCCChhHHHHHH
Q 021911 207 YRMLVGMVDVIFSDVAQPDQARILA 231 (305)
Q Consensus 207 ~~~~~~~fD~V~~d~~~~~~~~~l~ 231 (305)
. ......|++|.|...-..++.
T Consensus 82 ~---~~~~~~vv~NLPYnIss~il~ 103 (235)
T d1qama_ 82 P---KNQSYKIFGNIPYNISTDIIR 103 (235)
T ss_dssp C---SSCCCEEEEECCGGGHHHHHH
T ss_pred c---ccccceeeeeehhhhhHHHHH
Confidence 2 233457889999776666666
|
| >d2bm8a1 c.66.1.50 (A:2-233) Cephalosporin hydroxylase CmcI {Streptomyces clavuligerus [TaxId: 1901]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: CmcI-like domain: Cephalosporin hydroxylase CmcI species: Streptomyces clavuligerus [TaxId: 1901]
Probab=98.58 E-value=7.5e-08 Score=82.10 Aligned_cols=103 Identities=18% Similarity=0.297 Sum_probs=74.9
Q ss_pred CCCCCEEEEEecCCCccHHHHHhhh---CCCcEEEEEeCChHHHHHHHHH-HHcCCCeEEEEccCCCCccccc-CCCcEe
Q 021911 141 IKPGARVLYLGAASGTTVSHVSDIV---GPNGVVYAVEFSHRSGRDLVNM-AKKRTNVIPIIEDARHPAKYRM-LVGMVD 215 (305)
Q Consensus 141 ~~~g~~VLDlG~G~G~~t~~la~~~---~~~~~V~avD~s~~~~~~l~~~-a~~~~nI~~~~~D~~~~~~~~~-~~~~fD 215 (305)
.+| .+|||+|++.|..+..+|+.+ +..++|+++|+++.. ... ....++|.+++.|..+...... ....+|
T Consensus 79 ~KP-k~ILEIGv~~GgS~~~~a~~l~~~~~~~kI~giDId~~~----~~~~~~~~~~I~~i~gDs~~~~~~~~l~~~~~d 153 (232)
T d2bm8a1 79 LRP-RTIVELGVYNGGSLAWFRDLTKIMGIDCQVIGIDRDLSR----CQIPASDMENITLHQGDCSDLTTFEHLREMAHP 153 (232)
T ss_dssp HCC-SEEEEECCTTSHHHHHHHHHHHHTTCCCEEEEEESCCTT----CCCCGGGCTTEEEEECCSSCSGGGGGGSSSCSS
T ss_pred hCC-CEEEEECCCCchHHHHHHHHHHhcCCCceEEecCcChhh----hhhhhccccceeeeecccccHHHHHHHHhcCCC
Confidence 344 799999999999988887654 567899999998622 111 2223789999999877654322 234689
Q ss_pred EEEEeCCChhHHHHHHHHHhccCCCCcEEEEEE
Q 021911 216 VIFSDVAQPDQARILALNASYFLKAGGHFVISI 248 (305)
Q Consensus 216 ~V~~d~~~~~~~~~l~~~a~~~LkpGG~lv~s~ 248 (305)
+|+.|..+.....+...+...+|++||++++..
T Consensus 154 lIfID~~H~~~~v~~~~~~~~lLk~GG~iIveD 186 (232)
T d2bm8a1 154 LIFIDNAHANTFNIMKWAVDHLLEEGDYFIIED 186 (232)
T ss_dssp EEEEESSCSSHHHHHHHHHHHTCCTTCEEEECS
T ss_pred EEEEcCCcchHHHHHHHHHhcccCcCCEEEEEc
Confidence 999998866554444445668999999999864
|
| >d1wg8a2 c.66.1.23 (A:5-108,A:207-284) TM0872, methyltransferase domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: MraW-like putative methyltransferases domain: TM0872, methyltransferase domain species: Thermus thermophilus [TaxId: 274]
Probab=98.55 E-value=1.8e-07 Score=76.80 Aligned_cols=101 Identities=20% Similarity=0.253 Sum_probs=78.8
Q ss_pred CCCCCCEEEEEecCCCccHHHHHhhhCCCcEEEEEeCChHHHHHHHHHHHcC--CCeEEEEccCCCCccc--ccCCCcEe
Q 021911 140 WIKPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKR--TNVIPIIEDARHPAKY--RMLVGMVD 215 (305)
Q Consensus 140 ~~~~g~~VLDlG~G~G~~t~~la~~~~~~~~V~avD~s~~~~~~l~~~a~~~--~nI~~~~~D~~~~~~~--~~~~~~fD 215 (305)
.++++..++|+.+|.|..+..+.+. .++|+|+|.++ ++++.+++. +++.+++.++.+.... ......+|
T Consensus 15 ~~~~g~~~vD~T~G~GGhs~~iL~~---~~~viaiD~D~----~ai~~a~~~~~~~~~~~~~~f~~~~~~l~~~~~~~vd 87 (182)
T d1wg8a2 15 AVRPGGVYVDATLGGAGHARGILER---GGRVIGLDQDP----EAVARAKGLHLPGLTVVQGNFRHLKRHLAALGVERVD 87 (182)
T ss_dssp TCCTTCEEEETTCTTSHHHHHHHHT---TCEEEEEESCH----HHHHHHHHTCCTTEEEEESCGGGHHHHHHHTTCSCEE
T ss_pred CCCCCCEEEEeCCCCcHHHHHHhcc---cCcEEEEhhhh----hHHHHHhhccccceeEeehHHHHHHHHHHHcCCCccC
Confidence 5889999999999999999988875 46999999999 445555543 6899999888776532 12246899
Q ss_pred EEEEeCCC------------hhHHHHHHHHHhccCCCCcEEEEEE
Q 021911 216 VIFSDVAQ------------PDQARILALNASYFLKAGGHFVISI 248 (305)
Q Consensus 216 ~V~~d~~~------------~~~~~~l~~~a~~~LkpGG~lv~s~ 248 (305)
.|++|... ..+...|. .+..+|+|+|.+++.+
T Consensus 88 gIl~DLGvSs~qld~~~re~~~~~~~L~-~~~~~lk~gg~~~ii~ 131 (182)
T d1wg8a2 88 GILADLGVSSFHLDDPSDELNALKEFLE-QAAEVLAPGGRLVVIA 131 (182)
T ss_dssp EEEEECSCCHHHHHCGGTHHHHHHHHHH-HHHHHEEEEEEEEEEE
T ss_pred EEEEEccCCHHHhhcchHHHHHHHHHHH-HHHhhhCCCCeEEEEe
Confidence 99999872 12444555 7889999999999987
|
| >d2p41a1 c.66.1.25 (A:8-264) An RNA cap (nucleoside-2'-O-)-methyltransferase domain of RNA polymerase NS5 {Dengue virus 2 [TaxId: 11060]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: mRNA cap methylase domain: An RNA cap (nucleoside-2'-O-)-methyltransferase domain of RNA polymerase NS5 species: Dengue virus 2 [TaxId: 11060]
Probab=98.46 E-value=2.4e-08 Score=85.25 Aligned_cols=114 Identities=15% Similarity=0.132 Sum_probs=74.4
Q ss_pred hhhHHHHHHHccccccCCCCCCEEEEEecCCCccHHHHHhhhCCCcEEEEEeCChHHHHHHHH--HHHc-C-CCe-EEEE
Q 021911 124 FRSKLAAAVLGGVDNIWIKPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVN--MAKK-R-TNV-IPII 198 (305)
Q Consensus 124 ~~s~l~a~ll~~l~~~~~~~g~~VLDlG~G~G~~t~~la~~~~~~~~V~avD~s~~~~~~l~~--~a~~-~-~nI-~~~~ 198 (305)
+.|.-+..|....++..++|..+|+|||||+|.++..++... +-..|.++++-- ++.+ +... . .|| .+..
T Consensus 47 ~~SR~~~Kl~~~~~~~~~~~~~~vvDlG~~pGgws~~~a~~~-~v~~V~g~~iG~----d~~e~P~~~~~~~~ni~~~~~ 121 (257)
T d2p41a1 47 AVSRGSAKLRWFVERNLVTPEGKVVDLGCGRGGWSYYCGGLK-NVREVKGLTKGG----PGHEEPIPMSTYGWNLVRLQS 121 (257)
T ss_dssp CSSTHHHHHHHHHHTTSSCCCEEEEEETCTTSHHHHHHHTST-TEEEEEEECCCS----TTSCCCCCCCSTTGGGEEEEC
T ss_pred CcchHHHHHHHHHHhcCccCCCeEEEecCCCChHHHHHHhhc-CCCceeEEEecC----ccccCCccccccccccccchh
Confidence 467777777766667788999999999999999999999873 234678887742 1100 0000 0 133 3332
Q ss_pred c-cCCCCcccccCCCcEeEEEEeCCC------hhHH---HHHHHHHhccCCCCcEEEEEE
Q 021911 199 E-DARHPAKYRMLVGMVDVIFSDVAQ------PDQA---RILALNASYFLKAGGHFVISI 248 (305)
Q Consensus 199 ~-D~~~~~~~~~~~~~fD~V~~d~~~------~~~~---~~l~~~a~~~LkpGG~lv~s~ 248 (305)
. |+.. .....+|+|+||+.. -++. +++. -|.++|+|||.|++-+
T Consensus 122 ~~dv~~-----l~~~~~D~vlcDm~ess~~~~vd~~Rtl~vLe-la~~wLk~gg~FvvKV 175 (257)
T d2p41a1 122 GVDVFF-----IPPERCDTLLCDIGESSPNPTVEAGRTLRVLN-LVENWLSNNTQFCVKV 175 (257)
T ss_dssp SCCTTT-----SCCCCCSEEEECCCCCCSSHHHHHHHHHHHHH-HHHHHCCTTCEEEEEE
T ss_pred hhhHHh-----cCCCcCCEEEeeCCCCCCCchhhhhhHHHHHH-HHHHHcccCCEEEEEE
Confidence 2 2222 235689999999862 1333 3344 6779999999988866
|
| >d1af7a2 c.66.1.8 (A:92-284) Chemotaxis receptor methyltransferase CheR, C-terminal domain {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Chemotaxis receptor methyltransferase CheR, C-terminal domain domain: Chemotaxis receptor methyltransferase CheR, C-terminal domain species: Salmonella typhimurium [TaxId: 90371]
Probab=98.45 E-value=6.6e-07 Score=73.90 Aligned_cols=104 Identities=18% Similarity=0.148 Sum_probs=63.7
Q ss_pred CCCCEEEEEecCCCccHHHH----HhhhC---CCcEEEEEeCChHHHHHHHHHH--------------Hc----C-----
Q 021911 142 KPGARVLYLGAASGTTVSHV----SDIVG---PNGVVYAVEFSHRSGRDLVNMA--------------KK----R----- 191 (305)
Q Consensus 142 ~~g~~VLDlG~G~G~~t~~l----a~~~~---~~~~V~avD~s~~~~~~l~~~a--------------~~----~----- 191 (305)
.+..+||++||++|--+-.| .+... ...+|+|+|+|+.+++.+.+-. .+ .
T Consensus 23 ~~~lrIwsaGCstGeE~YSlA~~l~e~~~~~~~~~~I~atDi~~~~l~~A~~g~y~~~~~~~~~~~~~~~yf~~~~~~~~ 102 (193)
T d1af7a2 23 HGEYRVWSAAASTGEEPYSIAITLADALGMAPGRWKVFASDIDTEVLEKARSGIYRLSELKTLSPQQLQRYFMRGTGPHE 102 (193)
T ss_dssp CSCEEEEESCCTTTHHHHHHHHHHHHHHCSCTTSEEEEEEESCHHHHHHHHHTEEEGGGGTTSCHHHHHHHEEECCTTSC
T ss_pred CCCeEEEEeCCCCchhHHHHHHHHHHhhhhcCCceEEEeecCChHHhhHhhcCcccHHHHhhhhHHHHhhceeecCCCcc
Confidence 34569999999999854333 33321 2347999999995443332100 00 0
Q ss_pred ----------CCeEEEEccCCCCcccccCCCcEeEEEEeCC-----ChhHHHHHHHHHhccCCCCcEEEEEE
Q 021911 192 ----------TNVIPIIEDARHPAKYRMLVGMVDVIFSDVA-----QPDQARILALNASYFLKAGGHFVISI 248 (305)
Q Consensus 192 ----------~nI~~~~~D~~~~~~~~~~~~~fD~V~~d~~-----~~~~~~~l~~~a~~~LkpGG~lv~s~ 248 (305)
..+.+...+...... .....||+|+|-.. .+.+.+++. +.++.|+|||+|++-.
T Consensus 103 ~~~~~~~~~~~~v~~~~~~~~~~~~--~~~~~fDvI~CRNVLiYf~~~~~~~vl~-~l~~~L~pGG~L~lG~ 171 (193)
T d1af7a2 103 GLVRVRQELANYVEFSSVNLLEKQY--NVPGPFDAIFCRNVMIYFDKTTQEDILR-RFVPLLKPDGLLFAGH 171 (193)
T ss_dssp SEEEECHHHHTTEEEEECCTTCSSC--CCCCCEEEEEECSSGGGSCHHHHHHHHH-HHGGGEEEEEEEEECT
T ss_pred ceeehHHHHHHHHHHhhhhcccccc--CCCCCccEEEeehhHHhcCHHHHHHHHH-HHHHHhCCCcEEEEec
Confidence 123344444433221 12468999999444 345667776 9999999999998864
|
| >d2ar0a1 c.66.1.45 (A:6-529) M.EcoKI {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: N-6 DNA Methylase-like domain: M.EcoKI species: Escherichia coli [TaxId: 562]
Probab=98.44 E-value=5e-07 Score=85.83 Aligned_cols=154 Identities=9% Similarity=0.006 Sum_probs=88.5
Q ss_pred CCCCCCEEEEEecCCCccHHHHHhhhCCC-----------------cEEEEEeCChHHHHHHHHHHHcC---CC----eE
Q 021911 140 WIKPGARVLYLGAASGTTVSHVSDIVGPN-----------------GVVYAVEFSHRSGRDLVNMAKKR---TN----VI 195 (305)
Q Consensus 140 ~~~~g~~VLDlG~G~G~~t~~la~~~~~~-----------------~~V~avD~s~~~~~~l~~~a~~~---~n----I~ 195 (305)
.+.++.+|+|.+||+|.+...+.+.+... ..++++|+++...+-+.-.+.-. .+ -.
T Consensus 161 ~~~~~~~i~DPacGsG~fL~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~G~E~~~~~~~la~~nl~l~~~~~~i~~~~~ 240 (524)
T d2ar0a1 161 KPQPREVVQDPAAGTAGFLIEADRYVKSQTNDLDDLDGDTQDFQIHRAFIGLELVPGTRRLALMNCLLHDIEGNLDHGGA 240 (524)
T ss_dssp CCCTTCCEEETTCTTTHHHHHHHHHHHTTTTTTTTSCHHHHHHHHHTSEEEEESCHHHHHHHHHHHHTTTCCCBGGGTBS
T ss_pred cCccchhhcchhhhcchhhHHHHHHHHHhcCcccccchhHHHHHHHhhhhhhccCHHHHHHHHHHHHhhcccccccccch
Confidence 57788999999999999998887765221 25899999984432221111111 11 12
Q ss_pred EEEccCCCCcccccCCCcEeEEEEeCCC----------------hhHHHHHHHHHhccCCCCcEEEEEEcccccCCCCch
Q 021911 196 PIIEDARHPAKYRMLVGMVDVIFSDVAQ----------------PDQARILALNASYFLKAGGHFVISIKANCIDSTVPA 259 (305)
Q Consensus 196 ~~~~D~~~~~~~~~~~~~fD~V~~d~~~----------------~~~~~~l~~~a~~~LkpGG~lv~s~~~~~i~~~~~~ 259 (305)
....|....+. .....||+|++|||. .+-.-++..++.+.||++|++.+.++...+.... .
T Consensus 241 ~~~~~~l~~d~--~~~~kfD~Ii~NPPfg~~~~~~~~~~~~~~~~~~~~~Fi~~~l~~Lk~gGr~aiIlP~~~Lf~~~-~ 317 (524)
T d2ar0a1 241 IRLGNTLGSDG--ENLPKAHIVATNPPFGSAAGTNITRTFVHPTSNKQLCFMQHIIETLHPGGRAAVVVPDNVLFEGG-K 317 (524)
T ss_dssp EEESCTTSHHH--HTSCCEEEEEECCCCTTCSSCCCCSCCSSCCSCHHHHHHHHHHHHEEEEEEEEEEEEHHHHHCCT-H
T ss_pred hhhhhhhhhcc--cccccceeEEecCCccccccccchhhhccccccccHHHHHHHHHhccccCcEEEEEehHHhhhhh-h
Confidence 22333322211 123589999999992 1222234448999999999999998644332221 1
Q ss_pred hhhHHHHHHHHHHCCCcEeEEeecCC--C---CCceEEEEEEEcCC
Q 021911 260 EAVFQSEVKKLQQDQFKPFEQVTLEP--F---ERDHACVVGGYRMP 300 (305)
Q Consensus 260 ~~v~~~~~~~l~~~Gf~~~e~~~l~p--~---~~~~~~vv~~~~~~ 300 (305)
.. ...++|.+. +.+..++.+.+ | .-.-++++..+.++
T Consensus 318 ~~---~iR~~Ll~~-~~i~aII~LP~~~F~~t~i~t~Il~l~K~k~ 359 (524)
T d2ar0a1 318 GT---DIRRDLMDK-CHLHTILRLPTGIFYAQGVKTNVLFFTKGTV 359 (524)
T ss_dssp HH---HHHHHHHHH-EEEEEEEECCSSCSSSCSCCEEEEEEEEBCS
T ss_pred hH---HHHHHHHHc-CCceEEEECCCCcCCCCCCCeEEEEEECCCC
Confidence 11 123444333 45666666532 2 23455666666544
|
| >d1yuba_ c.66.1.24 (A:) rRNA adenine dimethylase {Streptococcus pneumoniae, Ermam [TaxId: 1313]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: rRNA adenine dimethylase-like domain: rRNA adenine dimethylase species: Streptococcus pneumoniae, Ermam [TaxId: 1313]
Probab=98.38 E-value=5.2e-08 Score=83.85 Aligned_cols=82 Identities=18% Similarity=0.212 Sum_probs=65.2
Q ss_pred CCCCCCEEEEEecCCCccHHHHHhhhCCCcEEEEEeCChHHHHHHHHHHHcC----CCeEEEEccCCCCcccccCCCcEe
Q 021911 140 WIKPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKR----TNVIPIIEDARHPAKYRMLVGMVD 215 (305)
Q Consensus 140 ~~~~g~~VLDlG~G~G~~t~~la~~~~~~~~V~avD~s~~~~~~l~~~a~~~----~nI~~~~~D~~~~~~~~~~~~~fD 215 (305)
.+.++++|||||||+|.+|..|++.. .+|+|||+++ ++++.++++ +|++++++|+.+.+. .....+
T Consensus 26 ~~~~~d~VLEIGpG~G~LT~~L~~~~---~~v~aIE~D~----~l~~~l~~~~~~~~n~~ii~~D~l~~~~---~~~~~~ 95 (245)
T d1yuba_ 26 NLKETDTVYEIGTGKGHLTTKLAKIS---KQVTSIELDS----HLFNLSSEKLKLNTRVTLIHQDILQFQF---PNKQRY 95 (245)
T ss_dssp CCCSSEEEEECSCCCSSCSHHHHHHS---SEEEESSSSC----SSSSSSSCTTTTCSEEEECCSCCTTTTC---CCSSEE
T ss_pred CCCCCCeEEEECCCccHHHHHHHhhc---CceeEeeecc----cchhhhhhhhhhccchhhhhhhhhcccc---ccceee
Confidence 57889999999999999999999983 4899999999 555555443 689999999987753 245778
Q ss_pred EEEEeCCChhHHHHHH
Q 021911 216 VIFSDVAQPDQARILA 231 (305)
Q Consensus 216 ~V~~d~~~~~~~~~l~ 231 (305)
.|+++.|...-..++.
T Consensus 96 ~vv~NLPY~Ist~il~ 111 (245)
T d1yuba_ 96 KIVGNIPYHLSTQIIK 111 (245)
T ss_dssp EEEEECCSSSCHHHHH
T ss_pred eEeeeeehhhhHHHHH
Confidence 8999999655555555
|
| >d1zq9a1 c.66.1.24 (A:36-313) Probable dimethyladenosine transferase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: rRNA adenine dimethylase-like domain: Probable dimethyladenosine transferase species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.32 E-value=5.6e-06 Score=72.01 Aligned_cols=84 Identities=14% Similarity=0.194 Sum_probs=67.7
Q ss_pred CCCCCCEEEEEecCCCccHHHHHhhhCCCcEEEEEeCChHHHHHHHHHHHcC---CCeEEEEccCCCCcccccCCCcEeE
Q 021911 140 WIKPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKR---TNVIPIIEDARHPAKYRMLVGMVDV 216 (305)
Q Consensus 140 ~~~~g~~VLDlG~G~G~~t~~la~~~~~~~~V~avD~s~~~~~~l~~~a~~~---~nI~~~~~D~~~~~~~~~~~~~fD~ 216 (305)
.+.+++.|||+|+|+|.+|..|++.. .+|++||++++.+..+.+..... .|+.++.+|+...+. ..++.
T Consensus 18 ~~~~~d~VlEIGPG~G~LT~~Ll~~~---~~v~aiE~D~~l~~~L~~~~~~~~~~~~~~~i~~D~l~~~~-----~~~~~ 89 (278)
T d1zq9a1 18 ALRPTDVVLEVGPGTGNMTVKLLEKA---KKVVACELDPRLVAELHKRVQGTPVASKLQVLVGDVLKTDL-----PFFDT 89 (278)
T ss_dssp CCCTTCEEEEECCTTSTTHHHHHHHS---SEEEEEESCHHHHHHHHHHHTTSTTGGGEEEEESCTTTSCC-----CCCSE
T ss_pred CCCCCCEEEEECCCchHHHHHHHhcC---CcEEEEEEccchhHHHHHHHhhhccccchhhhHHHHhhhhh-----hhhhh
Confidence 57788999999999999999999883 38999999996666665555443 589999999987642 34678
Q ss_pred EEEeCCChhHHHHHH
Q 021911 217 IFSDVAQPDQARILA 231 (305)
Q Consensus 217 V~~d~~~~~~~~~l~ 231 (305)
|++|.|...-..++.
T Consensus 90 vV~NLPY~Iss~il~ 104 (278)
T d1zq9a1 90 CVANLPYQISSPFVF 104 (278)
T ss_dssp EEEECCGGGHHHHHH
T ss_pred hhcchHHHHHHHHHH
Confidence 999999877777776
|
| >d1qyra_ c.66.1.24 (A:) High level kasugamycin resistance protein KsgA {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: rRNA adenine dimethylase-like domain: High level kasugamycin resistance protein KsgA species: Escherichia coli [TaxId: 562]
Probab=98.08 E-value=2.8e-06 Score=73.01 Aligned_cols=85 Identities=12% Similarity=0.142 Sum_probs=64.3
Q ss_pred CCCCCCEEEEEecCCCccHHHHHhhhCCCcEEEEEeCChHHHHHHHHHHHcC----CCeEEEEccCCCCcccccC--CCc
Q 021911 140 WIKPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKR----TNVIPIIEDARHPAKYRML--VGM 213 (305)
Q Consensus 140 ~~~~g~~VLDlG~G~G~~t~~la~~~~~~~~V~avD~s~~~~~~l~~~a~~~----~nI~~~~~D~~~~~~~~~~--~~~ 213 (305)
.+.+++.|||+|||+|.+|..|++.. .+|+|||+++ .+++.++++ +|++++.+|+...+..... ...
T Consensus 18 ~~~~~d~vlEIGpG~G~LT~~Ll~~~---~~v~aiEiD~----~l~~~L~~~~~~~~~~~ii~~D~l~~~~~~~~~~~~~ 90 (252)
T d1qyra_ 18 NPQKGQAMVEIGPGLAALTEPVGERL---DQLTVIELDR----DLAARLQTHPFLGPKLTIYQQDAMTFNFGELAEKMGQ 90 (252)
T ss_dssp CCCTTCCEEEECCTTTTTHHHHHTTC---SCEEEECCCH----HHHHHHHTCTTTGGGEEEECSCGGGCCHHHHHHHHTS
T ss_pred CCCCCCEEEEECCCchHHHHHHHccC---CceEEEEecc----chhHHHHHHhhhccchhHHhhhhhhhcccccccccCC
Confidence 57889999999999999999999873 4899999999 555544443 7899999999776432111 122
Q ss_pred EeEEEEeCCChhHHHHHH
Q 021911 214 VDVIFSDVAQPDQARILA 231 (305)
Q Consensus 214 fD~V~~d~~~~~~~~~l~ 231 (305)
--.|+.|.|...-..++.
T Consensus 91 ~~~vvgNlPY~Iss~Il~ 108 (252)
T d1qyra_ 91 PLRVFGNLPYNISTPLMF 108 (252)
T ss_dssp CEEEEEECCTTTHHHHHH
T ss_pred CeEEEecchHHHHHHHHH
Confidence 247889999877777776
|
| >d2dula1 c.66.1.58 (A:3-377) N(2),N(2)-dimethylguanosine tRNA methyltransferase Trm1 {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: TRM1-like domain: N(2),N(2)-dimethylguanosine tRNA methyltransferase Trm1 species: Pyrococcus horikoshii [TaxId: 53953]
Probab=97.99 E-value=3.9e-06 Score=76.12 Aligned_cols=101 Identities=14% Similarity=-0.018 Sum_probs=73.2
Q ss_pred CCCEEEEEecCCCccHHHHHhhhCCCcEEEEEeCChHHHHHHHHHHHcC-----------------CCeEEEEccCCCCc
Q 021911 143 PGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKR-----------------TNVIPIIEDARHPA 205 (305)
Q Consensus 143 ~g~~VLDlG~G~G~~t~~la~~~~~~~~V~avD~s~~~~~~l~~~a~~~-----------------~nI~~~~~D~~~~~ 205 (305)
.+.+|||+.|++|..++..|...+ ...|+++|+|+.+++.+.++++.+ .++.+.+.|+....
T Consensus 45 ~~~~vLD~~sasG~rsiRya~E~~-~~~V~~nDis~~A~~~i~~N~~lN~~~~~~~~~~~~~~~~~~~~~~~~~Da~~~~ 123 (375)
T d2dula1 45 NPKIVLDALSATGIRGIRFALETP-AEEVWLNDISEDAYELMKRNVMLNFDGELRESKGRAILKGEKTIVINHDDANRLM 123 (375)
T ss_dssp CCSEEEESSCTTSHHHHHHHHHSS-CSEEEEEESCHHHHHHHHHHHHHHCCSCCEECSSEEEEESSSEEEEEESCHHHHH
T ss_pred CCCEEEEcCCCccHHHHHHHHhCC-CCEEEEecCCHHHHHHHHHHHHhcCccccccccccccccccceeEeehhhhhhhh
Confidence 457999999999999999888764 458999999997776666665533 12556666664433
Q ss_pred ccccCCCcEeEEEEeCCChhHHHHHHHHHhccCCCCcEEEEEE
Q 021911 206 KYRMLVGMVDVIFSDVAQPDQARILALNASYFLKAGGHFVISI 248 (305)
Q Consensus 206 ~~~~~~~~fD~V~~d~~~~~~~~~l~~~a~~~LkpGG~lv~s~ 248 (305)
.. ....||+|.+|+.- .....+. .|.+.++.+|.|.++.
T Consensus 124 ~~--~~~~fDvIDiDPfG-s~~pfld-sAi~a~~~~Gll~vTa 162 (375)
T d2dula1 124 AE--RHRYFHFIDLDPFG-SPMEFLD-TALRSAKRRGILGVTA 162 (375)
T ss_dssp HH--STTCEEEEEECCSS-CCHHHHH-HHHHHEEEEEEEEEEE
T ss_pred Hh--hcCcCCcccCCCCC-CcHHHHH-HHHHHhccCCEEEEEe
Confidence 22 24579999999862 2233455 7888999999998864
|
| >d1dcta_ c.66.1.26 (A:) DNA methylase HaeIII {Haemophilus aegyptius [TaxId: 197575]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: C5 cytosine-specific DNA methylase, DCM domain: DNA methylase HaeIII species: Haemophilus aegyptius [TaxId: 197575]
Probab=97.90 E-value=0.00013 Score=63.43 Aligned_cols=144 Identities=10% Similarity=0.083 Sum_probs=93.3
Q ss_pred CEEEEEecCCCccHHHHHhhhCCCcEEEEEeCChHHHHHHHHHHHcCCCeEEEEccCCCCcccccCCCcEeEEEEeCCCh
Q 021911 145 ARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKRTNVIPIIEDARHPAKYRMLVGMVDVIFSDVAQP 224 (305)
Q Consensus 145 ~~VLDlG~G~G~~t~~la~~~~~~~~V~avD~s~~~~~~l~~~a~~~~nI~~~~~D~~~~~~~~~~~~~fD~V~~d~~~~ 224 (305)
++||||.||.|.++.-+-+. +- -.|.++|+++ .+.+..+.+-.-.+++.|+++..... ...+|+|+..+||.
T Consensus 1 mk~~~lF~G~Gg~~~gl~~a-G~-~~~~a~e~d~----~a~~~~~~N~~~~~~~~Di~~~~~~~--~~~~dll~~g~PCq 72 (324)
T d1dcta_ 1 MNLISLFSGAGGLDLGFQKA-GF-RIICANEYDK----SIWKTYESNHSAKLIKGDISKISSDE--FPKCDGIIGGPPCQ 72 (324)
T ss_dssp CEEEEESCSSCHHHHHHHHH-TC-EEEEEEECCH----HHHHHHHHHCCSEEEESCTTTSCGGG--SCCCSEEEECCCCT
T ss_pred CeEEEeCcCcCHHHHHHHHC-CC-EEEEEEeCCH----HHHHHHHHHCCCCCccCChhhCCHhH--cccccEEeeccccc
Confidence 47999999999998877654 32 3577999999 44444444423456789998876542 35799999998853
Q ss_pred ------------hHH-HHHH--HHHhccCCCCcEEEEEEcccccCCCCchhhhHHHHHHHHHHCCCcEeEEe-ec----C
Q 021911 225 ------------DQA-RILA--LNASYFLKAGGHFVISIKANCIDSTVPAEAVFQSEVKKLQQDQFKPFEQV-TL----E 284 (305)
Q Consensus 225 ------------~~~-~~l~--~~a~~~LkpGG~lv~s~~~~~i~~~~~~~~v~~~~~~~l~~~Gf~~~e~~-~l----~ 284 (305)
+.. .++. ..+...++|. ++++.-... + .+......+...+..+.+.||.+...+ +. -
T Consensus 73 ~fS~ag~~~g~~d~r~~l~~~~~~~i~~~~Pk-~~~lENV~~-~-~~~~~~~~~~~~l~~l~~lGY~v~~~vlna~~~Gv 149 (324)
T d1dcta_ 73 SWSEGGSLRGIDDPRGKLFYEYIRILKQKKPI-FFLAENVKG-M-MAQRHNKAVQEFIQEFDNAGYDVHIILLNANDYGV 149 (324)
T ss_dssp TTSSSSCCCCSSSHHHHHHHHHHHHHHHHCCS-EEEEEEEGG-G-GSGGGHHHHHHHHHHHHHHHEEEEEEEEEGGGGTC
T ss_pred ccccccccccccccccchHHHHHHHHHhhCCc-eeecccccc-c-cccccchhhHHHHhHHhhCCCccceeeeecccccC
Confidence 222 2221 1355678896 444442111 1 112334566667788888888876543 22 6
Q ss_pred CCCCceEEEEEEEcC
Q 021911 285 PFERDHACVVGGYRM 299 (305)
Q Consensus 285 p~~~~~~~vv~~~~~ 299 (305)
|..|...++||.++.
T Consensus 150 PQ~R~R~fiv~~r~~ 164 (324)
T d1dcta_ 150 AQDRKRVFYIGFRKE 164 (324)
T ss_dssp SBCCEEEEEEEEEGG
T ss_pred chhhceeeEeeecCC
Confidence 788999999998753
|
| >d2c7pa1 c.66.1.26 (A:1-327) DNA methylase HhaI {Haemophilus haemolyticus [TaxId: 726]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: C5 cytosine-specific DNA methylase, DCM domain: DNA methylase HhaI species: Haemophilus haemolyticus [TaxId: 726]
Probab=97.77 E-value=0.00019 Score=62.71 Aligned_cols=144 Identities=11% Similarity=0.026 Sum_probs=91.7
Q ss_pred CCCEEEEEecCCCccHHHHHhhhCCCcEEEEEeCChHHHHHHHHHHHcCCCeEEEEccCCCCcccccCCCcEeEEEEeCC
Q 021911 143 PGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKRTNVIPIIEDARHPAKYRMLVGMVDVIFSDVA 222 (305)
Q Consensus 143 ~g~~VLDlG~G~G~~t~~la~~~~~~~~V~avD~s~~~~~~l~~~a~~~~nI~~~~~D~~~~~~~~~~~~~fD~V~~d~~ 222 (305)
.+.+||||+||.|.++..|-+. + --.|.++|+++.+++....+. ++. .+.|+++..... ...+|+|+..+|
T Consensus 10 ~~lrv~~lFsG~Gg~~~gl~~a-G-~~~v~a~e~d~~a~~~~~~N~---~~~--~~~Di~~~~~~~--~~~~Dll~ggpP 80 (327)
T d2c7pa1 10 TGLRFIDLFAGLGGFRLALESC-G-AECVYSNEWDKYAQEVYEMNF---GEK--PEGDITQVNEKT--IPDHDILCAGFP 80 (327)
T ss_dssp TTCEEEEETCTTTHHHHHHHHT-T-CEEEEEECCCHHHHHHHHHHH---SCC--CBSCGGGSCGGG--SCCCSEEEEECC
T ss_pred CCCeEEEECccccHHHHHHHHC-C-CeEEEEEeCCHHHHHHHHHHC---CCC--CcCchhcCchhh--cceeeeeecccc
Confidence 4689999999999998887654 3 235788999995443332222 332 357887765432 357999999998
Q ss_pred Ch----------------hHHHHHHHHHhccCCCCcEEEEEEcccccCCCCchhhhHHHHHHHHHHCCCcEeEEe-ec--
Q 021911 223 QP----------------DQARILALNASYFLKAGGHFVISIKANCIDSTVPAEAVFQSEVKKLQQDQFKPFEQV-TL-- 283 (305)
Q Consensus 223 ~~----------------~~~~~l~~~a~~~LkpGG~lv~s~~~~~i~~~~~~~~v~~~~~~~l~~~Gf~~~e~~-~l-- 283 (305)
|. .....+. .+.+.++|. ++++.-.. .+. ......++...+..|++.||.+...+ ..
T Consensus 81 Cq~fS~ag~~~g~~d~r~~l~~~~~-~~i~~~kP~-~~~lENV~-~~~-~~~~~~~~~~i~~~l~~lGY~~~~~vl~a~~ 156 (327)
T d2c7pa1 81 CQAFSISGKQKGFEDSRGTLFFDIA-RIVREKKPK-VVFMENVK-NFA-SHDNGNTLEVVKNTMNELDYSFHAKVLNALD 156 (327)
T ss_dssp CTTTCTTSCCCGGGSTTSCHHHHHH-HHHHHHCCS-EEEEEEEG-GGG-TGGGGHHHHHHHHHHHHTTBCCEEEEEEGGG
T ss_pred cchhhhhhhhcCCcccchhHHHHHH-HHHhccCCc-EEecccch-hhh-hhccchhhHHhhhHHHhcCCcceeeEecHHH
Confidence 52 1222222 455678897 55554211 111 12334466677788889999876543 22
Q ss_pred --CCCCCceEEEEEEEcC
Q 021911 284 --EPFERDHACVVGGYRM 299 (305)
Q Consensus 284 --~p~~~~~~~vv~~~~~ 299 (305)
-|..|...++||.++.
T Consensus 157 ~GvPQ~R~R~fivg~r~~ 174 (327)
T d2c7pa1 157 YGIPQKRERIYMICFRND 174 (327)
T ss_dssp GTCSBCCEEEEEEEEBGG
T ss_pred cCCCchhhhheeeeeccC
Confidence 5778899999998753
|
| >d1g55a_ c.66.1.26 (A:) DNMT2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: C5 cytosine-specific DNA methylase, DCM domain: DNMT2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.52 E-value=0.0006 Score=59.56 Aligned_cols=145 Identities=12% Similarity=0.044 Sum_probs=87.1
Q ss_pred CEEEEEecCCCccHHHHHhhhCCCc-EEEEEeCChHHHHHHHHHHHcC-CCeEEEEccCCCCcccccCCCcEeEEEEeCC
Q 021911 145 ARVLYLGAASGTTVSHVSDIVGPNG-VVYAVEFSHRSGRDLVNMAKKR-TNVIPIIEDARHPAKYRMLVGMVDVIFSDVA 222 (305)
Q Consensus 145 ~~VLDlG~G~G~~t~~la~~~~~~~-~V~avD~s~~~~~~l~~~a~~~-~nI~~~~~D~~~~~~~~~~~~~fD~V~~d~~ 222 (305)
.+||||+||.|.++..|-.. +-.. .|.++|+++. +++..+.+ ++..+++.|+.+..........+|+++..+|
T Consensus 3 ~kv~~lF~G~Gg~~~gl~~a-G~~~~~~~a~E~~~~----a~~~~~~n~~~~~~~~~di~~~~~~~~~~~~~Dll~ggpP 77 (343)
T d1g55a_ 3 LRVLELYSGVGGMHHALRES-CIPAQVVAAIDVNTV----ANEVYKYNFPHTQLLAKTIEGITLEEFDRLSFDMILMSPP 77 (343)
T ss_dssp EEEEEETCTTCHHHHHHHHH-TCSEEEEEEECCCHH----HHHHHHHHCTTSCEECSCGGGCCHHHHHHHCCSEEEECCC
T ss_pred CEEEEcCcCccHHHHHHHHc-CCCCeEEEEEECCHH----HHHHHHHHCCCCCcccCchhhCCHhHcCCCCccEEEeecc
Confidence 68999999999988776554 3222 4779999994 44444333 5667777888766533222247999999999
Q ss_pred Ch------------hHH-HHHH--HHHhccC--CCCcEEEEEEcccccCCCCchhhhHHHHHHHHHHCCCcEeEEe-ec-
Q 021911 223 QP------------DQA-RILA--LNASYFL--KAGGHFVISIKANCIDSTVPAEAVFQSEVKKLQQDQFKPFEQV-TL- 283 (305)
Q Consensus 223 ~~------------~~~-~~l~--~~a~~~L--kpGG~lv~s~~~~~i~~~~~~~~v~~~~~~~l~~~Gf~~~e~~-~l- 283 (305)
|. +.. .++. ..+...+ ||. +|++.-.. .+. ....+...++.|++.||.+...+ +.
T Consensus 78 Cq~fS~ag~~~~~~d~r~~l~~~~~~~i~~~~~kPk-~~i~ENV~-~l~----~~~~~~~i~~~l~~~GY~v~~~vlna~ 151 (343)
T d1g55a_ 78 CQPFTRIGRQGDMTDSRTNSFLHILDILPRLQKLPK-YILLENVK-GFE----VSSTRDLLIQTIENCGFQYQEFLLSPT 151 (343)
T ss_dssp ------------------CHHHHHHHHGGGCSSCCS-EEEEEEET-TGG----GSHHHHHHHHHHHHTTEEEEEEEECGG
T ss_pred cccccccccccccccccccccchhhhhHhhhcCCCc-eeeeeccC-Ccc----cchhhHHHHhhhhccccccceeeeecc
Confidence 53 111 1222 0233334 576 45554211 111 11234445677888999987644 22
Q ss_pred ---CCCCCceEEEEEEEcCC
Q 021911 284 ---EPFERDHACVVGGYRMP 300 (305)
Q Consensus 284 ---~p~~~~~~~vv~~~~~~ 300 (305)
-|..|...++||.++..
T Consensus 152 dyGvPQ~R~Rvfivg~r~~~ 171 (343)
T d1g55a_ 152 SLGIPNSRLRYFLIAKLQSE 171 (343)
T ss_dssp GGTCSCCCCEEEEEEEESSS
T ss_pred ccCCcccceeEEEEEEeCCc
Confidence 36789999999987654
|
| >d2oyra1 c.66.1.55 (A:1-250) Hypothetical protein YhiQ {Shigella flexneri [TaxId: 623]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: YhiQ-like domain: Hypothetical protein YhiQ species: Shigella flexneri [TaxId: 623]
Probab=97.35 E-value=5.7e-05 Score=64.28 Aligned_cols=76 Identities=14% Similarity=0.070 Sum_probs=56.7
Q ss_pred CEEEEEecCCCccHHHHHhhhCCCcEEEEEeCChHH---HHHHHHHHHcC--------CCeEEEEccCCCCcccccCCCc
Q 021911 145 ARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRS---GRDLVNMAKKR--------TNVIPIIEDARHPAKYRMLVGM 213 (305)
Q Consensus 145 ~~VLDlG~G~G~~t~~la~~~~~~~~V~avD~s~~~---~~~l~~~a~~~--------~nI~~~~~D~~~~~~~~~~~~~ 213 (305)
.+|||+.||.|..+..+|.. + ++|+++|-++.. +++.++.+... .|+++++.|+.+.... ....
T Consensus 90 ~~VlD~TaGlG~Da~vlA~~-G--~~V~~iEr~p~l~~ll~d~l~r~~~~~~~~~~~~~ri~li~~Ds~~~L~~--~~~~ 164 (250)
T d2oyra1 90 PDVVDATAGLGRDAFVLASV-G--CRVRMLERNPVVAALLDDGLARGYADAEIGGWLQERLQLIHASSLTALTD--ITPR 164 (250)
T ss_dssp CCEEETTCTTCHHHHHHHHH-T--CCEEEEECCHHHHHHHHHHHHHHHHCTTTHHHHHHHEEEEESCHHHHSTT--CSSC
T ss_pred CEEEECCCcccHHHHHHHhC-C--CEEEEEccCHHHHHHHHHHHHHHHhCchhHHHHhhhheeecCcHHHHHhc--cCCC
Confidence 48999999999999999987 2 589999999843 23333333322 3789999998665432 2467
Q ss_pred EeEEEEeCCChh
Q 021911 214 VDVIFSDVAQPD 225 (305)
Q Consensus 214 fD~V~~d~~~~~ 225 (305)
||+|++|++.|.
T Consensus 165 ~DvIYlDPMFp~ 176 (250)
T d2oyra1 165 PQVVYLDPMFPH 176 (250)
T ss_dssp CSEEEECCCCCC
T ss_pred CCEEEECCCCcc
Confidence 999999999653
|
| >d1i4wa_ c.66.1.24 (A:) Transcription factor sc-mtTFB {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: rRNA adenine dimethylase-like domain: Transcription factor sc-mtTFB species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=97.31 E-value=0.0007 Score=59.58 Aligned_cols=87 Identities=13% Similarity=0.011 Sum_probs=60.7
Q ss_pred CCCEEEEEecCCCccHHHHHhhhCCCcEEEEEeCChHHHHHHHHHHHcCCCeEEEEccCCCCcccccC------------
Q 021911 143 PGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKRTNVIPIIEDARHPAKYRML------------ 210 (305)
Q Consensus 143 ~g~~VLDlG~G~G~~t~~la~~~~~~~~V~avD~s~~~~~~l~~~a~~~~nI~~~~~D~~~~~~~~~~------------ 210 (305)
.+..|||+|+|+|.+|.+|.+...+ .+|+++|++++....+.+... ..++.++..|+..+..+..+
T Consensus 43 ~~~~VlEIGPG~G~LT~~Ll~~~~~-~~v~~iE~D~~~~~~L~~~~~-~~~~~ii~~D~l~~~~~~~l~~~~~~~~~~~~ 120 (322)
T d1i4wa_ 43 EELKVLDLYPGVGIQSAIFYNKYCP-RQYSLLEKRSSLYKFLNAKFE-GSPLQILKRDPYDWSTYSNLIDEERIFVPEVQ 120 (322)
T ss_dssp TTCEEEEESCTTCHHHHHHHHHHCC-SEEEEECCCHHHHHHHHHHTT-TSSCEEECSCTTCHHHHHHHTTTTCSSCCCCC
T ss_pred CCCeEEEECCCCCHHHHHHHhcCCC-CEEEEEECCHHHHHHHHHhcc-CCCcEEEeCchhhcchhhhhhhcccccccccc
Confidence 4689999999999999999987543 389999999966665554433 36899999998765321100
Q ss_pred --CC--cEeEEEEeCCChhHHHHHH
Q 021911 211 --VG--MVDVIFSDVAQPDQARILA 231 (305)
Q Consensus 211 --~~--~fD~V~~d~~~~~~~~~l~ 231 (305)
.. .-=+|++|.|...-..++.
T Consensus 121 ~~~~~~~~~~vvaNLPy~iss~il~ 145 (322)
T d1i4wa_ 121 SSDHINDKFLTVANVTGEGSEGLIM 145 (322)
T ss_dssp CTTSEEEEEEEEEECCSTTHHHHHH
T ss_pred cccccCCceEEEEeCCchhhHHHHH
Confidence 00 1114788999665555554
|
| >d1e3ja2 c.2.1.1 (A:143-312) Ketose reductase (sorbitol dehydrogenase) {Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Ketose reductase (sorbitol dehydrogenase) species: Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]
Probab=97.20 E-value=0.001 Score=52.44 Aligned_cols=103 Identities=15% Similarity=0.192 Sum_probs=65.7
Q ss_pred ccccCCCCCCEEEEEecC-CCccHHHHHhhhCCCcEEEEEeCChHHHHHHHHHHHcCCCeEEEEccCCCCccc-------
Q 021911 136 VDNIWIKPGARVLYLGAA-SGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKRTNVIPIIEDARHPAKY------- 207 (305)
Q Consensus 136 l~~~~~~~g~~VLDlG~G-~G~~t~~la~~~~~~~~V~avD~s~~~~~~l~~~a~~~~nI~~~~~D~~~~~~~------- 207 (305)
+.+..++++++||-+||| -|..+..+++..+ .+|+++|.++ +-++.+++..--..+..|.......
T Consensus 19 ~~~~~~~~g~~vlV~G~G~vG~~~~~~ak~~G--a~vi~v~~~~----~r~~~a~~~ga~~~~~~~~~~~~~~~~~~~~~ 92 (170)
T d1e3ja2 19 CRRAGVQLGTTVLVIGAGPIGLVSVLAAKAYG--AFVVCTARSP----RRLEVAKNCGADVTLVVDPAKEEESSIIERIR 92 (170)
T ss_dssp HHHHTCCTTCEEEEECCSHHHHHHHHHHHHTT--CEEEEEESCH----HHHHHHHHTTCSEEEECCTTTSCHHHHHHHHH
T ss_pred HHHhCCCCCCEEEEEcccccchhhHhhHhhhc--ccccccchHH----HHHHHHHHcCCcEEEeccccccccchhhhhhh
Confidence 344578999999999987 4556677777754 5899999999 4455555542222233332221110
Q ss_pred ccCCCcEeEEEEeCCChhHHHHHHHHHhccCCCCcEEEEEE
Q 021911 208 RMLVGMVDVIFSDVAQPDQARILALNASYFLKAGGHFVISI 248 (305)
Q Consensus 208 ~~~~~~fD~V~~d~~~~~~~~~l~~~a~~~LkpGG~lv~s~ 248 (305)
......+|+||-....+.. +. .+.++|+++|++++.-
T Consensus 93 ~~~g~g~D~vid~~g~~~~---~~-~a~~~~~~~G~iv~~G 129 (170)
T d1e3ja2 93 SAIGDLPNVTIDCSGNEKC---IT-IGINITRTGGTLMLVG 129 (170)
T ss_dssp HHSSSCCSEEEECSCCHHH---HH-HHHHHSCTTCEEEECS
T ss_pred cccccCCceeeecCCChHH---HH-HHHHHHhcCCceEEEe
Confidence 0113568999877766543 33 5668999999998864
|
| >d1jqba2 c.2.1.1 (A:1140-1313) Bacterial secondary alcohol dehydrogenase {Clostridium beijerinckii [TaxId: 1520]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Bacterial secondary alcohol dehydrogenase species: Clostridium beijerinckii [TaxId: 1520]
Probab=97.05 E-value=0.00032 Score=56.11 Aligned_cols=102 Identities=18% Similarity=0.101 Sum_probs=64.8
Q ss_pred cccCCCCCCEEEEEecCC-CccHHHHHhhhCCCcEEEEEeCChHHHHHHHHHHHcCCCeEEEEccCCCCcc-cc--cCCC
Q 021911 137 DNIWIKPGARVLYLGAAS-GTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKRTNVIPIIEDARHPAK-YR--MLVG 212 (305)
Q Consensus 137 ~~~~~~~g~~VLDlG~G~-G~~t~~la~~~~~~~~V~avD~s~~~~~~l~~~a~~~~nI~~~~~D~~~~~~-~~--~~~~ 212 (305)
+...++++++||-+|||+ |..+..+|+.++. .+|+++|.++.. ++.+++..-.+++...-..+.. .. ....
T Consensus 21 ~~a~~~~g~~VlI~GaG~vGl~~~q~ak~~Ga-~~Vi~~d~~~~r----~~~a~~lGa~~~i~~~~~~~~~~v~~~t~g~ 95 (174)
T d1jqba2 21 ELADIEMGSSVVVIGIGAVGLMGIAGAKLRGA-GRIIGVGSRPIC----VEAAKFYGATDILNYKNGHIEDQVMKLTNGK 95 (174)
T ss_dssp HHTTCCTTCCEEEECCSHHHHHHHHHHHTTTC-SCEEEECCCHHH----HHHHHHHTCSEEECGGGSCHHHHHHHHTTTS
T ss_pred HHhCCCCCCEEEEEcCCcchhhhhhhhhcccc-cccccccchhhh----HHHHHhhCccccccccchhHHHHHHHHhhcc
Confidence 334789999999999987 7788888887653 379999999844 3333332112233222111111 00 1123
Q ss_pred cEeEEEEeCCChhHHHHHHHHHhccCCCCcEEEEE
Q 021911 213 MVDVIFSDVAQPDQARILALNASYFLKAGGHFVIS 247 (305)
Q Consensus 213 ~fD~V~~d~~~~~~~~~l~~~a~~~LkpGG~lv~s 247 (305)
.||+||-....+.-. . ++.++|+|+|++++.
T Consensus 96 G~D~vid~~g~~~~~---~-~a~~~~~~~G~iv~~ 126 (174)
T d1jqba2 96 GVDRVIMAGGGSETL---S-QAVKMVKPGGIISNI 126 (174)
T ss_dssp CEEEEEECSSCTTHH---H-HHHHHEEEEEEEEEC
T ss_pred CcceEEEccCCHHHH---H-HHHHHHhcCCEEEEE
Confidence 599999877765433 3 556799999999885
|
| >d1kola2 c.2.1.1 (A:161-355) Formaldehyde dehydrogenase {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Formaldehyde dehydrogenase species: Pseudomonas putida [TaxId: 303]
Probab=97.03 E-value=0.00044 Score=56.41 Aligned_cols=104 Identities=18% Similarity=0.167 Sum_probs=66.7
Q ss_pred cCCCCCCEEEEEecCC-CccHHHHHhhhCCCcEEEEEeCChHHHHHHHHHHHcCCCeEEEEccCCCCcc---cccCCCcE
Q 021911 139 IWIKPGARVLYLGAAS-GTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKRTNVIPIIEDARHPAK---YRMLVGMV 214 (305)
Q Consensus 139 ~~~~~g~~VLDlG~G~-G~~t~~la~~~~~~~~V~avD~s~~~~~~l~~~a~~~~nI~~~~~D~~~~~~---~~~~~~~f 214 (305)
..++++++||.+|||+ |..+..+|...+ ...|+++|.++ +.++.+++..-.+.+...-.++.. .......+
T Consensus 21 a~v~~G~tVlV~GaG~vGl~a~~~ak~~g-a~~Vi~~d~~~----~rl~~a~~~Ga~~~~~~~~~~~~~~i~~~t~g~g~ 95 (195)
T d1kola2 21 AGVGPGSTVYVAGAGPVGLAAAASARLLG-AAVVIVGDLNP----ARLAHAKAQGFEIADLSLDTPLHEQIAALLGEPEV 95 (195)
T ss_dssp TTCCTTCEEEEECCSHHHHHHHHHHHHTT-CSEEEEEESCH----HHHHHHHHTTCEEEETTSSSCHHHHHHHHHSSSCE
T ss_pred hCCCCCCEEEEECcCHHHHHHHHHHHhhc-ccceeeecccc----hhhHhhhhccccEEEeCCCcCHHHHHHHHhCCCCc
Confidence 4789999999999998 557777777754 45899999999 555666665322222111111110 00123479
Q ss_pred eEEEEeCCC------------hhHHHHHHHHHhccCCCCcEEEEEE
Q 021911 215 DVIFSDVAQ------------PDQARILALNASYFLKAGGHFVISI 248 (305)
Q Consensus 215 D~V~~d~~~------------~~~~~~l~~~a~~~LkpGG~lv~s~ 248 (305)
|++|-.... ......+. .+.+.++|+|++++.-
T Consensus 96 D~vid~vG~~~~~~~~~~~~~~~~~~~l~-~~~~~~r~gG~v~~~G 140 (195)
T d1kola2 96 DCAVDAVGFEARGHGHEGAKHEAPATVLN-SLMQVTRVAGKIGIPG 140 (195)
T ss_dssp EEEEECCCTTCBCSSTTGGGSBCTTHHHH-HHHHHEEEEEEEEECS
T ss_pred EEEEECccccccCCcccceeecCcHHHHH-HHHHHHhcCCEEEEee
Confidence 999964431 12345666 8889999999998863
|
| >d1vj0a2 c.2.1.1 (A:156-337) Hypothetical protein TM0436 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Hypothetical protein TM0436 species: Thermotoga maritima [TaxId: 2336]
Probab=96.97 E-value=0.0011 Score=53.00 Aligned_cols=99 Identities=15% Similarity=0.165 Sum_probs=62.3
Q ss_pred CCCCCCEEEEEecCC-CccHHHHHhhhCCCcEEEEEeCChHHHHHHHHHHHcCCCeEEEEccCCCCcc----c--ccCCC
Q 021911 140 WIKPGARVLYLGAAS-GTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKRTNVIPIIEDARHPAK----Y--RMLVG 212 (305)
Q Consensus 140 ~~~~g~~VLDlG~G~-G~~t~~la~~~~~~~~V~avD~s~~~~~~l~~~a~~~~nI~~~~~D~~~~~~----~--~~~~~ 212 (305)
.++++++||-+|||+ |..+..+|+.++. .+|+++|.++.+ ++.+++..--..+...-.+... . .....
T Consensus 25 ~~~~G~~VlV~GaG~iG~~~~~~ak~~Ga-~~Vi~~~~~~~~----~~~a~~lGa~~vi~~~~~~~~~~~~~i~~~~~~~ 99 (182)
T d1vj0a2 25 ESFAGKTVVIQGAGPLGLFGVVIARSLGA-ENVIVIAGSPNR----LKLAEEIGADLTLNRRETSVEERRKAIMDITHGR 99 (182)
T ss_dssp SCCBTCEEEEECCSHHHHHHHHHHHHTTB-SEEEEEESCHHH----HHHHHHTTCSEEEETTTSCHHHHHHHHHHHTTTS
T ss_pred CCCCCCEEEEECCCccchhheeccccccc-cccccccccccc----ccccccccceEEEeccccchHHHHHHHHHhhCCC
Confidence 578899999999874 6677888888653 389999999944 4455443211222221111110 0 01124
Q ss_pred cEeEEEEeCCChhHHHHHHHHHhccCCCCcEEEEE
Q 021911 213 MVDVIFSDVAQPDQARILALNASYFLKAGGHFVIS 247 (305)
Q Consensus 213 ~fD~V~~d~~~~~~~~~l~~~a~~~LkpGG~lv~s 247 (305)
.+|+||-....+... . .+.++|+++|++++.
T Consensus 100 g~Dvvid~vG~~~~~---~-~a~~~l~~~G~iv~~ 130 (182)
T d1vj0a2 100 GADFILEATGDSRAL---L-EGSELLRRGGFYSVA 130 (182)
T ss_dssp CEEEEEECSSCTTHH---H-HHHHHEEEEEEEEEC
T ss_pred CceEEeecCCchhHH---H-HHHHHhcCCCEEEEE
Confidence 699999777665433 3 566899999999875
|
| >d1piwa2 c.2.1.1 (A:153-320) Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Cinnamyl alcohol dehydrogenase, ADH6 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=96.96 E-value=0.00015 Score=57.63 Aligned_cols=101 Identities=19% Similarity=0.127 Sum_probs=62.6
Q ss_pred cccCCCCCCEEEEEecC-CCccHHHHHhhhCCCcEEEEEeCChHHHHHHHHHHHcCCCeEEEE-ccCCCCcccccCCCcE
Q 021911 137 DNIWIKPGARVLYLGAA-SGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKRTNVIPII-EDARHPAKYRMLVGMV 214 (305)
Q Consensus 137 ~~~~~~~g~~VLDlG~G-~G~~t~~la~~~~~~~~V~avD~s~~~~~~l~~~a~~~~nI~~~~-~D~~~~~~~~~~~~~f 214 (305)
.+..++|+++||-+||| .|..+..+|+.++ ++|+++|.|+..++ .+++.---+++. .+..+. .......|
T Consensus 21 ~~~~~~~g~~vlI~GaG~vG~~a~q~ak~~G--~~vi~~~~~~~k~~----~a~~lGa~~~i~~~~~~~~--~~~~~~~~ 92 (168)
T d1piwa2 21 VRNGCGPGKKVGIVGLGGIGSMGTLISKAMG--AETYVISRSSRKRE----DAMKMGADHYIATLEEGDW--GEKYFDTF 92 (168)
T ss_dssp HHTTCSTTCEEEEECCSHHHHHHHHHHHHHT--CEEEEEESSSTTHH----HHHHHTCSEEEEGGGTSCH--HHHSCSCE
T ss_pred HHhCcCCCCEEEEECCCCcchhHHHHhhhcc--ccccccccchhHHH----HhhccCCcEEeeccchHHH--HHhhhccc
Confidence 34478999999999987 5667777777765 58999999985433 333321112222 111111 11234689
Q ss_pred eEEEEeCCChhHHHHHHHHHhccCCCCcEEEEE
Q 021911 215 DVIFSDVAQPDQARILALNASYFLKAGGHFVIS 247 (305)
Q Consensus 215 D~V~~d~~~~~~~~~l~~~a~~~LkpGG~lv~s 247 (305)
|+|+......... .+. .+.+.|+|+|++++.
T Consensus 93 d~vi~~~~~~~~~-~~~-~~~~~l~~~G~iv~~ 123 (168)
T d1piwa2 93 DLIVVCASSLTDI-DFN-IMPKAMKVGGRIVSI 123 (168)
T ss_dssp EEEEECCSCSTTC-CTT-TGGGGEEEEEEEEEC
T ss_pred ceEEEEecCCccc-hHH-HHHHHhhccceEEEe
Confidence 9998754432211 123 567899999999886
|
| >d1pl8a2 c.2.1.1 (A:146-316) Ketose reductase (sorbitol dehydrogenase) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Ketose reductase (sorbitol dehydrogenase) species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.72 E-value=0.0034 Score=49.41 Aligned_cols=104 Identities=17% Similarity=0.173 Sum_probs=65.6
Q ss_pred ccccCCCCCCEEEEEecCCCc-cHHHHHhhhCCCcEEEEEeCChHHHHHHHHHHHcCCCeEEEEccCCCCccc-----cc
Q 021911 136 VDNIWIKPGARVLYLGAASGT-TVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKRTNVIPIIEDARHPAKY-----RM 209 (305)
Q Consensus 136 l~~~~~~~g~~VLDlG~G~G~-~t~~la~~~~~~~~V~avD~s~~~~~~l~~~a~~~~nI~~~~~D~~~~~~~-----~~ 209 (305)
+++..++++++||=+|||+-. .+..++...+ ..+|+++|.++ +-++.+++..--..+..+-.++... ..
T Consensus 19 ~~~~~~~~gd~VlI~G~G~iG~~~~~~a~~~G-~~~Vi~~d~~~----~rl~~a~~~Ga~~~~~~~~~~~~~~~~~~~~~ 93 (171)
T d1pl8a2 19 CRRGGVTLGHKVLVCGAGPIGMVTLLVAKAMG-AAQVVVTDLSA----TRLSKAKEIGADLVLQISKESPQEIARKVEGQ 93 (171)
T ss_dssp HHHHTCCTTCEEEEECCSHHHHHHHHHHHHTT-CSEEEEEESCH----HHHHHHHHTTCSEEEECSSCCHHHHHHHHHHH
T ss_pred HHHhCCCCCCEEEEECCCccHHHHHHHHHHcC-CceEEeccCCH----HHHHHHHHhCCccccccccccccccccccccc
Confidence 444578999999999997544 5556666654 34899999999 4455565542122232222222111 01
Q ss_pred CCCcEeEEEEeCCChhHHHHHHHHHhccCCCCcEEEEEE
Q 021911 210 LVGMVDVIFSDVAQPDQARILALNASYFLKAGGHFVISI 248 (305)
Q Consensus 210 ~~~~fD~V~~d~~~~~~~~~l~~~a~~~LkpGG~lv~s~ 248 (305)
....+|+|+-....+.. +. .+.++|+++|++++.-
T Consensus 94 ~g~g~Dvvid~~G~~~~---~~-~a~~~~~~gG~iv~~G 128 (171)
T d1pl8a2 94 LGCKPEVTIECTGAEAS---IQ-AGIYATRSGGTLVLVG 128 (171)
T ss_dssp HTSCCSEEEECSCCHHH---HH-HHHHHSCTTCEEEECS
T ss_pred CCCCceEEEeccCCchh---HH-HHHHHhcCCCEEEEEe
Confidence 13478999987776553 33 5668999999998864
|
| >d1o9ga_ c.66.1.29 (A:) rRNA methyltransferase AviRa {Streptomyces viridochromogenes [TaxId: 1938]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: rRNA methyltransferase AviRa domain: rRNA methyltransferase AviRa species: Streptomyces viridochromogenes [TaxId: 1938]
Probab=96.55 E-value=0.00096 Score=56.44 Aligned_cols=125 Identities=12% Similarity=0.083 Sum_probs=69.7
Q ss_pred chhhHHHHHHHccc-cccCCCCCCEEEEEecCCCccHHHHHhhhCCC---------------------------------
Q 021911 123 PFRSKLAAAVLGGV-DNIWIKPGARVLYLGAASGTTVSHVSDIVGPN--------------------------------- 168 (305)
Q Consensus 123 ~~~s~l~a~ll~~l-~~~~~~~g~~VLDlG~G~G~~t~~la~~~~~~--------------------------------- 168 (305)
++...|++.++... ..........+||.+||+|++.+..|.+...-
T Consensus 29 ~~~~~Laa~il~~al~l~~w~~~~~LlDPmCGSGTilIEAAlia~niaPGl~R~f~fe~w~~~~~~~w~~l~~~a~~~~~ 108 (249)
T d1o9ga_ 29 AFPVRLATEIFQRALARLPGDGPVTLWDPCCGSGYLLTVLGLLHRRSLRQVIASDVDPAPLELAAKNLALLSPAGLTARE 108 (249)
T ss_dssp CCCHHHHHHHHHHHHHTSSCCSCEEEEETTCTTSHHHHHHHHHTGGGEEEEEEEESCHHHHHHHHHHHHTTSHHHHHHHH
T ss_pred CcchHHHHHHHHHHhhhhcCCCCCceeccccCccHHHHHHHHHHhCcCcCcccchhhhcccccCHHHHHHHHHHHHHHHh
Confidence 34555666655321 11122445689999999999999888653110
Q ss_pred ------cEEEEEeCChHHHHHH---HHHHHcC---CCeEEEEccCCCCcccc--cCCCcEeEEEEeCCC----------h
Q 021911 169 ------GVVYAVEFSHRSGRDL---VNMAKKR---TNVIPIIEDARHPAKYR--MLVGMVDVIFSDVAQ----------P 224 (305)
Q Consensus 169 ------~~V~avD~s~~~~~~l---~~~a~~~---~nI~~~~~D~~~~~~~~--~~~~~fD~V~~d~~~----------~ 224 (305)
..+++.|++++++... .++++.. ..|.+.+.|+++..+.. ......++||+|+|. +
T Consensus 109 ~~~~~~~~i~G~D~d~~ai~~A~~~r~n~~~Agl~~~i~i~~~d~f~~~~~~~~~~~~~~GlIVtNPPYGERl~~~~~~~ 188 (249)
T d1o9ga_ 109 LERREQSERFGKPSYLEAAQAARRLRERLTAEGGALPCAIRTADVFDPRALSAVLAGSAPDVVLTDLPYGERTHWEGQVP 188 (249)
T ss_dssp HHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHTTSSCCEEEEECCTTCGGGHHHHHTTCCCSEEEEECCGGGSSSSSSCCC
T ss_pred ccccccCCccccccCHHHHHHHHHHHHHHHHcCCCceeeeeecchhccCcchhccCCCCCCEEEeCCCccccccccccch
Confidence 1234444444332222 1122111 46888999987765322 123567999999991 1
Q ss_pred --hHHHHHHHHHhccCCCCcEEEEEE
Q 021911 225 --DQARILALNASYFLKAGGHFVISI 248 (305)
Q Consensus 225 --~~~~~l~~~a~~~LkpGG~lv~s~ 248 (305)
....++. .+.+.|..--.++++.
T Consensus 189 ~~~~~~~~~-~l~~~~p~~s~~~it~ 213 (249)
T d1o9ga_ 189 GQPVAGLLR-SLASALPAHAVIAVTD 213 (249)
T ss_dssp HHHHHHHHH-HHHHHSCTTCEEEEEE
T ss_pred HHHHHHHHH-HHHccCCCCcEEEEeC
Confidence 1233333 5677786665555554
|
| >d1f8fa2 c.2.1.1 (A:163-336) Benzyl alcohol dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Benzyl alcohol dehydrogenase species: Acinetobacter calcoaceticus [TaxId: 471]
Probab=96.52 E-value=0.0053 Score=48.49 Aligned_cols=101 Identities=15% Similarity=0.231 Sum_probs=63.8
Q ss_pred cCCCCCCEEEEEecCCC-ccHHHHHhhhCCCcEEEEEeCChHHHHHHHHHHHcCCCeEEEEccCCCCccc--ccCCCcEe
Q 021911 139 IWIKPGARVLYLGAASG-TTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKRTNVIPIIEDARHPAKY--RMLVGMVD 215 (305)
Q Consensus 139 ~~~~~g~~VLDlG~G~G-~~t~~la~~~~~~~~V~avD~s~~~~~~l~~~a~~~~nI~~~~~D~~~~~~~--~~~~~~fD 215 (305)
.+++|+++||-+|||+- ..+..+++.++. ..|+++|.++ +-++.+++..-.+++..+-.+..+. ....+.||
T Consensus 24 ~~~~~g~~VlI~G~G~iG~~~~~~ak~~g~-~~v~~~~~~~----~k~~~a~~~Ga~~~i~~~~~~~~~~i~~~t~gg~D 98 (174)
T d1f8fa2 24 LKVTPASSFVTWGAGAVGLSALLAAKVCGA-SIIIAVDIVE----SRLELAKQLGATHVINSKTQDPVAAIKEITDGGVN 98 (174)
T ss_dssp TCCCTTCEEEEESCSHHHHHHHHHHHHHTC-SEEEEEESCH----HHHHHHHHHTCSEEEETTTSCHHHHHHHHTTSCEE
T ss_pred hCCCCCCEEEEeCCCHHHhhhhhccccccc-ceeeeeccHH----HHHHHHHHcCCeEEEeCCCcCHHHHHHHHcCCCCc
Confidence 36899999999998643 356667777653 4788899998 4444454432223443332222111 11235799
Q ss_pred EEEEeCCChhHHHHHHHHHhccCCCCcEEEEEE
Q 021911 216 VIFSDVAQPDQARILALNASYFLKAGGHFVISI 248 (305)
Q Consensus 216 ~V~~d~~~~~~~~~l~~~a~~~LkpGG~lv~s~ 248 (305)
+||-....+.-. . .+.++|+|+|++++.-
T Consensus 99 ~vid~~G~~~~~---~-~~~~~~~~~G~i~~~G 127 (174)
T d1f8fa2 99 FALESTGSPEIL---K-QGVDALGILGKIAVVG 127 (174)
T ss_dssp EEEECSCCHHHH---H-HHHHTEEEEEEEEECC
T ss_pred EEEEcCCcHHHH---H-HHHhcccCceEEEEEe
Confidence 999877765433 2 5567999999998853
|
| >d1e3ia2 c.2.1.1 (A:168-341) Alcohol dehydrogenase {Mouse (Mus musculus), class II [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Mouse (Mus musculus), class II [TaxId: 10090]
Probab=96.39 E-value=0.0058 Score=48.43 Aligned_cols=101 Identities=17% Similarity=0.178 Sum_probs=66.4
Q ss_pred cCCCCCCEEEEEecCC-CccHHHHHhhhCCCcEEEEEeCChHHHHHHHHHHHcCCCeEEEEccCCC-Ccc---cccCCCc
Q 021911 139 IWIKPGARVLYLGAAS-GTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKRTNVIPIIEDARH-PAK---YRMLVGM 213 (305)
Q Consensus 139 ~~~~~g~~VLDlG~G~-G~~t~~la~~~~~~~~V~avD~s~~~~~~l~~~a~~~~nI~~~~~D~~~-~~~---~~~~~~~ 213 (305)
..++++++||-+|||+ |..+..+++.++ ...|+++|.++. -++.+++.--...+...-.+ ... .......
T Consensus 24 a~v~~G~~VlV~G~G~iGl~a~~~ak~~G-a~~Vi~~d~~~~----r~~~a~~~Ga~~~i~~~~~~~~~~~~~~~~~~~G 98 (174)
T d1e3ia2 24 AKVTPGSTCAVFGLGCVGLSAIIGCKIAG-ASRIIAIDINGE----KFPKAKALGATDCLNPRELDKPVQDVITELTAGG 98 (174)
T ss_dssp SCCCTTCEEEEECCSHHHHHHHHHHHHTT-CSEEEEECSCGG----GHHHHHHTTCSEEECGGGCSSCHHHHHHHHHTSC
T ss_pred hCCCCCCEEEEECCChHHHHHHHHHHHhC-CceeeeeccchH----HHHHHHHhCCCcccCCccchhhhhhhHhhhhcCC
Confidence 3689999999999987 778888888875 458999999984 34555554222233211111 100 0012357
Q ss_pred EeEEEEeCCChhHHHHHHHHHhccCCCC-cEEEEEE
Q 021911 214 VDVIFSDVAQPDQARILALNASYFLKAG-GHFVISI 248 (305)
Q Consensus 214 fD~V~~d~~~~~~~~~l~~~a~~~LkpG-G~lv~s~ 248 (305)
+|+||-....+.. +. ++.+.|+++ |++++.-
T Consensus 99 ~d~vie~~G~~~~---~~-~a~~~~~~g~G~~v~vG 130 (174)
T d1e3ia2 99 VDYSLDCAGTAQT---LK-AAVDCTVLGWGSCTVVG 130 (174)
T ss_dssp BSEEEESSCCHHH---HH-HHHHTBCTTTCEEEECC
T ss_pred CcEEEEecccchH---HH-HHHHHhhcCCeEEEecC
Confidence 9999977766554 33 667899996 9998864
|
| >d1llua2 c.2.1.1 (A:144-309) Alcohol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=96.37 E-value=0.0028 Score=49.54 Aligned_cols=101 Identities=15% Similarity=0.256 Sum_probs=61.2
Q ss_pred cccCCCCCCEEEEEecCC-CccHHHHHhhhCCCcEEEEEeCChHHHHHHHHHHHcCCCeEEEEccCCCCcc-cccCCCcE
Q 021911 137 DNIWIKPGARVLYLGAAS-GTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKRTNVIPIIEDARHPAK-YRMLVGMV 214 (305)
Q Consensus 137 ~~~~~~~g~~VLDlG~G~-G~~t~~la~~~~~~~~V~avD~s~~~~~~l~~~a~~~~nI~~~~~D~~~~~~-~~~~~~~f 214 (305)
.+..++++++||=+|||+ |..+..+++..+ .+|+++|.++.. ++.+++..-..++..+-.+..+ .......+
T Consensus 21 ~~~~~~~g~~VlV~GaG~vG~~~~~~ak~~G--~~Vi~~~~~~~~----~~~a~~~Ga~~~i~~~~~~~~~~~~~~~~g~ 94 (166)
T d1llua2 21 KQTNARPGQWVAISGIGGLGHVAVQYARAMG--LHVAAIDIDDAK----LELARKLGASLTVNARQEDPVEAIQRDIGGA 94 (166)
T ss_dssp HHHTCCTTCEEEEECCSHHHHHHHHHHHHTT--CEEEEEESCHHH----HHHHHHTTCSEEEETTTSCHHHHHHHHHSSE
T ss_pred HHhCCCCCCEEEEeeccccHHHHHHHHHHcC--CccceecchhhH----HHhhhccCccccccccchhHHHHHHHhhcCC
Confidence 344789999999999864 445666777754 689999999843 4455544222333322222211 00112345
Q ss_pred eEEEEeCCChhHHHHHHHHHhccCCCCcEEEEE
Q 021911 215 DVIFSDVAQPDQARILALNASYFLKAGGHFVIS 247 (305)
Q Consensus 215 D~V~~d~~~~~~~~~l~~~a~~~LkpGG~lv~s 247 (305)
|.++.+...+. .+. .+.++|+|+|++++.
T Consensus 95 ~~~i~~~~~~~---~~~-~~~~~l~~~G~iv~~ 123 (166)
T d1llua2 95 HGVLVTAVSNS---AFG-QAIGMARRGGTIALV 123 (166)
T ss_dssp EEEEECCSCHH---HHH-HHHTTEEEEEEEEEC
T ss_pred cccccccccch---HHH-HHHHHhcCCcEEEEE
Confidence 55555555543 344 677999999999875
|
| >d1uufa2 c.2.1.1 (A:145-312) Hypothetical protein YahK {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Hypothetical protein YahK species: Escherichia coli [TaxId: 562]
Probab=96.35 E-value=0.0027 Score=49.90 Aligned_cols=101 Identities=20% Similarity=0.249 Sum_probs=63.5
Q ss_pred ccccCCCCCCEEEEEecCC-CccHHHHHhhhCCCcEEEEEeCChHHHHHHHHHHHcCCCeEEEEccCCCCcccccCCCcE
Q 021911 136 VDNIWIKPGARVLYLGAAS-GTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKRTNVIPIIEDARHPAKYRMLVGMV 214 (305)
Q Consensus 136 l~~~~~~~g~~VLDlG~G~-G~~t~~la~~~~~~~~V~avD~s~~~~~~l~~~a~~~~nI~~~~~D~~~~~~~~~~~~~f 214 (305)
|....++|+++||-+|||+ |.++..+|+.++ .+++++|.++... +.+++...-.++ |..+..........+
T Consensus 23 l~~~~~~~G~~VlI~GaG~vG~~a~qlak~~G--a~~i~~~~~~~~~----~~a~~lGad~~i--~~~~~~~~~~~~~~~ 94 (168)
T d1uufa2 23 LRHWQAGPGKKVGVVGIGGLGHMGIKLAHAMG--AHVVAFTTSEAKR----EAAKALGADEVV--NSRNADEMAAHLKSF 94 (168)
T ss_dssp HHHTTCCTTCEEEEECCSHHHHHHHHHHHHTT--CEEEEEESSGGGH----HHHHHHTCSEEE--ETTCHHHHHTTTTCE
T ss_pred HHHhCCCCCCEEEEeccchHHHHHHHHhhccc--ccchhhccchhHH----HHHhccCCcEEE--ECchhhHHHHhcCCC
Confidence 3445789999999999864 556777777754 5788899887443 233332111222 332322222234579
Q ss_pred eEEEEeCCChhHHHHHHHHHhccCCCCcEEEEEE
Q 021911 215 DVIFSDVAQPDQARILALNASYFLKAGGHFVISI 248 (305)
Q Consensus 215 D~V~~d~~~~~~~~~l~~~a~~~LkpGG~lv~s~ 248 (305)
|+|+-....+... . .+..+|+++|++++.-
T Consensus 95 D~vid~~g~~~~~---~-~~~~~l~~~G~iv~~G 124 (168)
T d1uufa2 95 DFILNTVAAPHNL---D-DFTTLLKRDGTMTLVG 124 (168)
T ss_dssp EEEEECCSSCCCH---H-HHHTTEEEEEEEEECC
T ss_pred ceeeeeeecchhH---H-HHHHHHhcCCEEEEec
Confidence 9999877655433 2 4558999999999864
|
| >d1yb5a2 c.2.1.1 (A:121-294) Quinone oxidoreductase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Quinone oxidoreductase species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.93 E-value=0.0011 Score=52.57 Aligned_cols=95 Identities=17% Similarity=0.217 Sum_probs=60.9
Q ss_pred CCCCCCEEEEEec--CCCccHHHHHhhhCCCcEEEEEeCChHHHHHHHHHHHcCCCeEEEEccCCCCc--c---cccCCC
Q 021911 140 WIKPGARVLYLGA--ASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKRTNVIPIIEDARHPA--K---YRMLVG 212 (305)
Q Consensus 140 ~~~~g~~VLDlG~--G~G~~t~~la~~~~~~~~V~avD~s~~~~~~l~~~a~~~~nI~~~~~D~~~~~--~---~~~~~~ 212 (305)
.++++++||-.|+ +.|..+..+|+..+ .+|++++-+++. ++.+++..--.++ |..+.+ + ......
T Consensus 25 ~~~~g~~VlV~Ga~G~vG~~aiq~a~~~G--~~vi~~~~~~~~----~~~~~~~Ga~~vi--~~~~~~~~~~i~~~t~~~ 96 (174)
T d1yb5a2 25 CVKAGESVLVHGASGGVGLAACQIARAYG--LKILGTAGTEEG----QKIVLQNGAHEVF--NHREVNYIDKIKKYVGEK 96 (174)
T ss_dssp CCCTTCEEEEETCSSHHHHHHHHHHHHTT--CEEEEEESSHHH----HHHHHHTTCSEEE--ETTSTTHHHHHHHHHCTT
T ss_pred CCCCCCEEEEEeccccccccccccccccC--cccccccccccc----cccccccCccccc--ccccccHHHHhhhhhccC
Confidence 6889999999996 35567778888764 689999988843 3444443211222 322221 1 111245
Q ss_pred cEeEEEEeCCChhHHHHHHHHHhccCCCCcEEEEE
Q 021911 213 MVDVIFSDVAQPDQARILALNASYFLKAGGHFVIS 247 (305)
Q Consensus 213 ~fD~V~~d~~~~~~~~~l~~~a~~~LkpGG~lv~s 247 (305)
.||+|+..... ..+. ++.+.|+|+|+++..
T Consensus 97 g~d~v~d~~g~----~~~~-~~~~~l~~~G~iv~~ 126 (174)
T d1yb5a2 97 GIDIIIEMLAN----VNLS-KDLSLLSHGGRVIVV 126 (174)
T ss_dssp CEEEEEESCHH----HHHH-HHHHHEEEEEEEEEC
T ss_pred CceEEeecccH----HHHH-HHHhccCCCCEEEEE
Confidence 79999976542 2344 677899999999875
|
| >d1jvba2 c.2.1.1 (A:144-313) Alcohol dehydrogenase {Archaeon Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Archaeon Sulfolobus solfataricus [TaxId: 2287]
Probab=95.71 E-value=0.0057 Score=47.90 Aligned_cols=103 Identities=18% Similarity=0.221 Sum_probs=62.8
Q ss_pred ccccCCCCCCEEEEEecC--CCccHHHHHhhhCCCcEEEEEeCChHHHHHHHHHHHcCCCeEEEEccCCCCccc---ccC
Q 021911 136 VDNIWIKPGARVLYLGAA--SGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKRTNVIPIIEDARHPAKY---RML 210 (305)
Q Consensus 136 l~~~~~~~g~~VLDlG~G--~G~~t~~la~~~~~~~~V~avD~s~~~~~~l~~~a~~~~nI~~~~~D~~~~~~~---~~~ 210 (305)
+.+..++++++||=+||+ .|..+..++...+ ..+|+++|.++.. ++.+++..--..+..+-.++... ...
T Consensus 20 l~~~~~~~g~~vlV~G~~G~vG~~~~~~~~~~g-~~~V~~~~~~~~~----~~~~~~~Ga~~~i~~~~~~~~~~~~~~~~ 94 (170)
T d1jvba2 20 VRKASLDPTKTLLVVGAGGGLGTMAVQIAKAVS-GATIIGVDVREEA----VEAAKRAGADYVINASMQDPLAEIRRITE 94 (170)
T ss_dssp HHHTTCCTTCEEEEETTTSHHHHHHHHHHHHHT-CCEEEEEESSHHH----HHHHHHHTCSEEEETTTSCHHHHHHHHTT
T ss_pred HHHhCCCCCCEEEEEeccccceeeeeecccccc-cccccccccchhh----HHHHHHcCCceeeccCCcCHHHHHHHHhh
Confidence 344578999999999973 4445666777654 3589999999844 33343321112333322222111 112
Q ss_pred CCcEeEEEEeCCChhHHHHHHHHHhccCCCCcEEEEE
Q 021911 211 VGMVDVIFSDVAQPDQARILALNASYFLKAGGHFVIS 247 (305)
Q Consensus 211 ~~~fD~V~~d~~~~~~~~~l~~~a~~~LkpGG~lv~s 247 (305)
...||+|+.....+.-. . .+.++|+|+|++++.
T Consensus 95 ~~~~d~vid~~g~~~~~---~-~a~~~l~~~G~iv~~ 127 (170)
T d1jvba2 95 SKGVDAVIDLNNSEKTL---S-VYPKALAKQGKYVMV 127 (170)
T ss_dssp TSCEEEEEESCCCHHHH---T-TGGGGEEEEEEEEEC
T ss_pred cccchhhhcccccchHH---H-hhhhhcccCCEEEEe
Confidence 35699998766654433 3 566899999999875
|
| >d1eg2a_ c.66.1.11 (A:) m.RsrI N6 adenosine-specific DNA methyltransferase {Rhodobacter sphaeroides [TaxId: 1063]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Type II DNA methylase domain: m.RsrI N6 adenosine-specific DNA methyltransferase species: Rhodobacter sphaeroides [TaxId: 1063]
Probab=95.25 E-value=0.014 Score=48.84 Aligned_cols=84 Identities=14% Similarity=0.035 Sum_probs=50.7
Q ss_pred EEEEccCCCCcccccCCCcEeEEEEeCCC--------------hhHHHHHHHHHhccCCCCcEEEEEEcccccCCCCchh
Q 021911 195 IPIIEDARHPAKYRMLVGMVDVIFSDVAQ--------------PDQARILALNASYFLKAGGHFVISIKANCIDSTVPAE 260 (305)
Q Consensus 195 ~~~~~D~~~~~~~~~~~~~fD~V~~d~~~--------------~~~~~~l~~~a~~~LkpGG~lv~s~~~~~i~~~~~~~ 260 (305)
.++++|..+.... +.++++|+|+.|+|- ......+. ++.++|||+|.+++......... ....
T Consensus 6 ~~~~~D~le~l~~-l~d~SIDliitDPPYn~~~~~~~~~~~y~~~~~~~~~-e~~rvLk~~G~~~~~~~~~~~~~-~~~~ 82 (279)
T d1eg2a_ 6 VYDVCDCLDTLAK-LPDDSVQLIICDPPYNIMLADWDDHMDYIGWAKRWLA-EAERVLSPTGSIAIFGGLQYQGE-AGSG 82 (279)
T ss_dssp EEEECCHHHHHHT-SCTTCEEEEEECCCSBCCGGGGGTCSSHHHHHHHHHH-HHHHHEEEEEEEEEEECSCCCCC-TTBC
T ss_pred eEEechHHHHHhh-CcCCCccEEEECCCCCCCcccccCHHHHHHHHHHHHH-HHHHHhCCCccEEEecCcccccc-cccc
Confidence 4677787654332 346899999999992 12344455 89999999999999762111111 1111
Q ss_pred hhHHHHHHHHHHCCCcEeEEe
Q 021911 261 AVFQSEVKKLQQDQFKPFEQV 281 (305)
Q Consensus 261 ~v~~~~~~~l~~~Gf~~~e~~ 281 (305)
..+......++..+|.....+
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~i 103 (279)
T d1eg2a_ 83 DLISIISHMRQNSKMLLANLI 103 (279)
T ss_dssp CHHHHHHHHHHHCCCEEEEEE
T ss_pred chhhHHHHHHhccCceeeeee
Confidence 122222345567888877654
|
| >d1booa_ c.66.1.11 (A:) m.PvuII N4 cytosine-specific DNA methyltransferase {Proteus vulgaris [TaxId: 585]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Type II DNA methylase domain: m.PvuII N4 cytosine-specific DNA methyltransferase species: Proteus vulgaris [TaxId: 585]
Probab=95.24 E-value=0.0096 Score=50.79 Aligned_cols=56 Identities=18% Similarity=0.088 Sum_probs=41.0
Q ss_pred hhHHHHHHHccccccCCCCCCEEEEEecCCCccHHHHHhhhCCCcEEEEEeCChHHHHHHHHHHHcC
Q 021911 125 RSKLAAAVLGGVDNIWIKPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKR 191 (305)
Q Consensus 125 ~s~l~a~ll~~l~~~~~~~g~~VLDlG~G~G~~t~~la~~~~~~~~V~avD~s~~~~~~l~~~a~~~ 191 (305)
...|...++.. ...+++.|||..||+|+++..+... + .+.+++|+++ +..+.+.+|
T Consensus 236 P~~L~~rlI~~----~s~~gdiVlDpF~GSGTT~~AA~~l-g--R~~Ig~El~~----~y~~~a~~R 291 (320)
T d1booa_ 236 PAKLPEFFIRM----LTEPDDLVVDIFGGSNTTGLVAERE-S--RKWISFEMKP----EYVAASAFR 291 (320)
T ss_dssp CTHHHHHHHHH----HCCTTCEEEETTCTTCHHHHHHHHT-T--CEEEEEESCH----HHHHHHHGG
T ss_pred chHHHHHhhhh----cccCCCEEEecCCCCcHHHHHHHHc-C--CcEEEEeCCH----HHHHHHHHH
Confidence 44666666542 4578999999999999777665554 3 4899999999 556666655
|
| >d1g60a_ c.66.1.11 (A:) Methyltransferase mboII {Moraxella bovis [TaxId: 476]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Type II DNA methylase domain: Methyltransferase mboII species: Moraxella bovis [TaxId: 476]
Probab=95.20 E-value=0.011 Score=48.92 Aligned_cols=74 Identities=9% Similarity=-0.127 Sum_probs=49.0
Q ss_pred EEEccCCCCcccccCCCcEeEEEEeCCC-----------------hhHHHHHHHHHhccCCCCcEEEEEEcccccCCCCc
Q 021911 196 PIIEDARHPAKYRMLVGMVDVIFSDVAQ-----------------PDQARILALNASYFLKAGGHFVISIKANCIDSTVP 258 (305)
Q Consensus 196 ~~~~D~~~~~~~~~~~~~fD~V~~d~~~-----------------~~~~~~l~~~a~~~LkpGG~lv~s~~~~~i~~~~~ 258 (305)
++++|..+.... +.++++|+|+.|+|- ....+.+. ++.++|+|+|.+++...
T Consensus 7 i~~gDcle~l~~-lpd~sVdliitdPPY~~~~~~~d~~~~~~~y~~~~~~~~~-e~~rvLk~~g~~~~~~~--------- 75 (256)
T d1g60a_ 7 IHQMNCFDFLDQ-VENKSVQLAVIDPPYNLSKADWDSFDSHNEFLAFTYRWID-KVLDKLDKDGSLYIFNT--------- 75 (256)
T ss_dssp EEECCHHHHHHH-SCTTCEEEEEECCCCSSCSSGGGCCSSHHHHHHHHHHHHH-HHHHHEEEEEEEEEEEC---------
T ss_pred EEeccHHHHHhh-CcCCCcCEEEECCCCCCCcCcCcCCCCHHHHHHHHHHHHH-HhhhccccCcccccccC---------
Confidence 567787664332 346799999999992 12334555 89999999999887641
Q ss_pred hhhhHHHHHHHHHHCCCcEeEEe
Q 021911 259 AEAVFQSEVKKLQQDQFKPFEQV 281 (305)
Q Consensus 259 ~~~v~~~~~~~l~~~Gf~~~e~~ 281 (305)
+ .........+.+.+|.....+
T Consensus 76 ~-~~~~~~~~~~~~~g~~~~~~i 97 (256)
T d1g60a_ 76 P-FNCAFICQYLVSKGMIFQNWI 97 (256)
T ss_dssp H-HHHHHHHHHHHHTTCEEEEEE
T ss_pred c-hhhhhhhhhhhcccceeeeee
Confidence 1 112223456778899877654
|
| >d1rjwa2 c.2.1.1 (A:138-305) Alcohol dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Bacillus stearothermophilus [TaxId: 1422]
Probab=95.16 E-value=0.019 Score=44.41 Aligned_cols=100 Identities=20% Similarity=0.233 Sum_probs=58.4
Q ss_pred cccCCCCCCEEEEEecCCCc-cHHHHHhhhCCCcEEEEEeCChHHHHHHHHHHHcCCCeEEEEccCCC-Ccc-cccCCCc
Q 021911 137 DNIWIKPGARVLYLGAASGT-TVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKRTNVIPIIEDARH-PAK-YRMLVGM 213 (305)
Q Consensus 137 ~~~~~~~g~~VLDlG~G~G~-~t~~la~~~~~~~~V~avD~s~~~~~~l~~~a~~~~nI~~~~~D~~~-~~~-~~~~~~~ 213 (305)
....++|+++||-.|||+-. .+..++...+ .+|+++|.++.. ++.+++.. ...+...... ... .......
T Consensus 21 ~~~~~~~g~~vlv~G~G~iG~~a~~~a~~~g--~~v~~~~~~~~r----~~~~k~~G-a~~~~~~~~~~~~~~~~~~~~~ 93 (168)
T d1rjwa2 21 KVTGAKPGEWVAIYGIGGLGHVAVQYAKAMG--LNVVAVDIGDEK----LELAKELG-ADLVVNPLKEDAAKFMKEKVGG 93 (168)
T ss_dssp HHHTCCTTCEEEEECCSTTHHHHHHHHHHTT--CEEEEECSCHHH----HHHHHHTT-CSEEECTTTSCHHHHHHHHHSS
T ss_pred HHhCCCCCCEEEEeecccchhhhhHHHhcCC--CeEeccCCCHHH----hhhhhhcC-cceecccccchhhhhcccccCC
Confidence 33478899999999987644 4445555543 589999999844 44444431 1222211111 110 0111234
Q ss_pred EeEEEEeCCChhHHHHHHHHHhccCCCCcEEEEE
Q 021911 214 VDVIFSDVAQPDQARILALNASYFLKAGGHFVIS 247 (305)
Q Consensus 214 fD~V~~d~~~~~~~~~l~~~a~~~LkpGG~lv~s 247 (305)
+|.++.+...+. .+. .+.+.|+|+|++++.
T Consensus 94 ~~~~v~~~~~~~---~~~-~a~~~l~~~G~i~~~ 123 (168)
T d1rjwa2 94 VHAAVVTAVSKP---AFQ-SAYNSIRRGGACVLV 123 (168)
T ss_dssp EEEEEESSCCHH---HHH-HHHHHEEEEEEEEEC
T ss_pred CceEEeecCCHH---HHH-HHHHHhccCCceEec
Confidence 666666655443 344 777899999999885
|
| >d1g60a_ c.66.1.11 (A:) Methyltransferase mboII {Moraxella bovis [TaxId: 476]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Type II DNA methylase domain: Methyltransferase mboII species: Moraxella bovis [TaxId: 476]
Probab=95.14 E-value=0.016 Score=47.82 Aligned_cols=55 Identities=16% Similarity=0.108 Sum_probs=38.6
Q ss_pred hhHHHHHHHccccccCCCCCCEEEEEecCCCccHHHHHhhhCCCcEEEEEeCChHHHHHHHH
Q 021911 125 RSKLAAAVLGGVDNIWIKPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVN 186 (305)
Q Consensus 125 ~s~l~a~ll~~l~~~~~~~g~~VLDlG~G~G~~t~~la~~~~~~~~V~avD~s~~~~~~l~~ 186 (305)
.-.|...++.. ...+++.|||..||+|+++.+..+. + .+.+++|+++..++.+.+
T Consensus 198 P~~L~~~lI~~----~s~~gd~VlDpF~GSGTT~~aa~~~-~--R~~ig~El~~~y~~~a~~ 252 (256)
T d1g60a_ 198 PRDLIERIIRA----SSNPNDLVLDCFMGSGTTAIVAKKL-G--RNFIGCDMNAEYVNQANF 252 (256)
T ss_dssp CHHHHHHHHHH----HCCTTCEEEESSCTTCHHHHHHHHT-T--CEEEEEESCHHHHHHHHH
T ss_pred chhHHHHHHHH----hCCCCCEEEECCCCchHHHHHHHHc-C--CeEEEEeCCHHHHHHHHH
Confidence 34566666532 3578999999999999777655544 3 489999999955444433
|
| >d2g5ca2 c.2.1.6 (A:30-200) Prephenate dehydrogenase TyrA {Aquifex aeolicus [TaxId: 63363]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Prephenate dehydrogenase TyrA species: Aquifex aeolicus [TaxId: 63363]
Probab=94.95 E-value=0.036 Score=42.93 Aligned_cols=90 Identities=16% Similarity=0.126 Sum_probs=56.7
Q ss_pred EEEEEecCCCccHHHHHhhh---CCCcEEEEEeCChHHHHHHHHHHHcCCCeEEEEccCCCCcccccCCCcEeEEEEeCC
Q 021911 146 RVLYLGAASGTTVSHVSDIV---GPNGVVYAVEFSHRSGRDLVNMAKKRTNVIPIIEDARHPAKYRMLVGMVDVIFSDVA 222 (305)
Q Consensus 146 ~VLDlG~G~G~~t~~la~~~---~~~~~V~avD~s~~~~~~l~~~a~~~~nI~~~~~D~~~~~~~~~~~~~fD~V~~d~~ 222 (305)
+|+=+|| |.....+|..+ +...+|+++|.++ +.++.+++...+.....+.... .....|+|++..|
T Consensus 3 ~I~IIG~--G~mG~sla~~L~~~g~~~~I~~~D~~~----~~~~~a~~~~~~~~~~~~~~~~-----~~~~~dlIila~p 71 (171)
T d2g5ca2 3 NVLIVGV--GFMGGSFAKSLRRSGFKGKIYGYDINP----ESISKAVDLGIIDEGTTSIAKV-----EDFSPDFVMLSSP 71 (171)
T ss_dssp EEEEESC--SHHHHHHHHHHHHTTCCSEEEEECSCH----HHHHHHHHTTSCSEEESCGGGG-----GGTCCSEEEECSC
T ss_pred EEEEEcc--CHHHHHHHHHHHhcCCCeEEEEEECCh----HHHHHHHHhhcchhhhhhhhhh-----hccccccccccCC
Confidence 5777877 55655555443 3345899999998 5555666543333333332211 1246799999888
Q ss_pred ChhHHHHHHHHHhccCCCCcEEEEEE
Q 021911 223 QPDQARILALNASYFLKAGGHFVISI 248 (305)
Q Consensus 223 ~~~~~~~l~~~a~~~LkpGG~lv~s~ 248 (305)
.....+++. .+..+++++ .+++.+
T Consensus 72 ~~~~~~vl~-~l~~~~~~~-~ii~d~ 95 (171)
T d2g5ca2 72 VRTFREIAK-KLSYILSED-ATVTDQ 95 (171)
T ss_dssp HHHHHHHHH-HHHHHSCTT-CEEEEC
T ss_pred chhhhhhhh-hhhcccccc-cccccc
Confidence 766667776 788889887 444443
|
| >d1h2ba2 c.2.1.1 (A:155-326) Alcohol dehydrogenase {Archaeon Aeropyrum pernix [TaxId: 56636]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Archaeon Aeropyrum pernix [TaxId: 56636]
Probab=94.86 E-value=0.011 Score=46.25 Aligned_cols=100 Identities=15% Similarity=0.144 Sum_probs=62.4
Q ss_pred CCCCCCEEEEEecCCCc-cHHHHHhhhCCCcEEEEEeCChHHHHHHHHHHHcCCCeEEEEccCCCCccc--ccCCCcEeE
Q 021911 140 WIKPGARVLYLGAASGT-TVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKRTNVIPIIEDARHPAKY--RMLVGMVDV 216 (305)
Q Consensus 140 ~~~~g~~VLDlG~G~G~-~t~~la~~~~~~~~V~avD~s~~~~~~l~~~a~~~~nI~~~~~D~~~~~~~--~~~~~~fD~ 216 (305)
.++|+++||-+|||+-. .+..++...+ ...|+++|.++. -++.+++....+++..+-...... ......+|+
T Consensus 29 ~~~~g~~vli~GaG~vG~~~~~~a~~~g-~~~vv~~~~~~~----k~~~~~~~ga~~~i~~~~~~~~~~~~~~~~~g~d~ 103 (172)
T d1h2ba2 29 TLYPGAYVAIVGVGGLGHIAVQLLKVMT-PATVIALDVKEE----KLKLAERLGADHVVDARRDPVKQVMELTRGRGVNV 103 (172)
T ss_dssp TCCTTCEEEEECCSHHHHHHHHHHHHHC-CCEEEEEESSHH----HHHHHHHTTCSEEEETTSCHHHHHHHHTTTCCEEE
T ss_pred ccCCCCEEEEeCCChHHHHHHHHHHhhc-CcccccccchhH----HHHHHhhcccceeecCcccHHHHHHHhhCCCCceE
Confidence 46889999999987544 4456666665 348899999983 344454442233343221111110 012346999
Q ss_pred EEEeCCChhHHHHHHHHHhccCCCCcEEEEEE
Q 021911 217 IFSDVAQPDQARILALNASYFLKAGGHFVISI 248 (305)
Q Consensus 217 V~~d~~~~~~~~~l~~~a~~~LkpGG~lv~s~ 248 (305)
||-....+.- +. .+.+.|+++|++++.-
T Consensus 104 vid~~g~~~~---~~-~a~~~l~~~G~iv~~G 131 (172)
T d1h2ba2 104 AMDFVGSQAT---VD-YTPYLLGRMGRLIIVG 131 (172)
T ss_dssp EEESSCCHHH---HH-HGGGGEEEEEEEEECC
T ss_pred EEEecCcchH---HH-HHHHHHhCCCEEEEEe
Confidence 9977765543 33 6778999999999864
|
| >d1eg2a_ c.66.1.11 (A:) m.RsrI N6 adenosine-specific DNA methyltransferase {Rhodobacter sphaeroides [TaxId: 1063]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Type II DNA methylase domain: m.RsrI N6 adenosine-specific DNA methyltransferase species: Rhodobacter sphaeroides [TaxId: 1063]
Probab=94.52 E-value=0.025 Score=47.20 Aligned_cols=59 Identities=15% Similarity=0.085 Sum_probs=41.5
Q ss_pred hhhHHHHHHHccccccCCCCCCEEEEEecCCCccHHHHHhhhCCCcEEEEEeCChHHHHHHHHHHH
Q 021911 124 FRSKLAAAVLGGVDNIWIKPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAK 189 (305)
Q Consensus 124 ~~s~l~a~ll~~l~~~~~~~g~~VLDlG~G~G~~t~~la~~~~~~~~V~avD~s~~~~~~l~~~a~ 189 (305)
+...|...++.. ...+++.|||..||+|+++.+.... + .+.+++|+++.....+.+...
T Consensus 192 kP~~L~~~~I~~----~s~~gdiVLDpF~GSGTT~~Aa~~l-g--R~~ig~El~~~y~~~a~~Ri~ 250 (279)
T d1eg2a_ 192 KPAAVIERLVRA----LSHPGSTVLDFFAGSGVTARVAIQE-G--RNSICTDAAPVFKEYYQKQLT 250 (279)
T ss_dssp CCHHHHHHHHHH----HSCTTCEEEETTCTTCHHHHHHHHH-T--CEEEEEESSTHHHHHHHHHHH
T ss_pred cchhHHHHHHHh----hcCCCCEEEecCCCCcHHHHHHHHh-C--CeEEEEeCCHHHHHHHHHHHH
Confidence 445566666542 4578999999999999876665554 3 489999999966554444443
|
| >d1lssa_ c.2.1.9 (A:) Ktn Mja218 {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Potassium channel NAD-binding domain domain: Ktn Mja218 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=94.52 E-value=0.072 Score=39.48 Aligned_cols=90 Identities=7% Similarity=0.056 Sum_probs=58.5
Q ss_pred CEEEEEecCCCccHHHHHhhhCC-CcEEEEEeCChHHHHHHHHHHHcCCCeEEEEccCCCCcccccC-CCcEeEEEEeCC
Q 021911 145 ARVLYLGAASGTTVSHVSDIVGP-NGVVYAVEFSHRSGRDLVNMAKKRTNVIPIIEDARHPAKYRML-VGMVDVIFSDVA 222 (305)
Q Consensus 145 ~~VLDlG~G~G~~t~~la~~~~~-~~~V~avD~s~~~~~~l~~~a~~~~nI~~~~~D~~~~~~~~~~-~~~fD~V~~d~~ 222 (305)
++|+=+|+ |.++..+++.+.. ...|+.+|.++..++ .+....++.++.+|+++....... ...+|.+++-..
T Consensus 1 M~IvI~G~--G~~G~~la~~L~~~g~~v~vid~d~~~~~----~~~~~~~~~vi~Gd~~~~~~l~~~~i~~a~~vv~~t~ 74 (132)
T d1lssa_ 1 MYIIIAGI--GRVGYTLAKSLSEKGHDIVLIDIDKDICK----KASAEIDALVINGDCTKIKTLEDAGIEDADMYIAVTG 74 (132)
T ss_dssp CEEEEECC--SHHHHHHHHHHHHTTCEEEEEESCHHHHH----HHHHHCSSEEEESCTTSHHHHHHTTTTTCSEEEECCS
T ss_pred CEEEEECC--CHHHHHHHHHHHHCCCCcceecCChhhhh----hhhhhhhhhhccCcccchhhhhhcChhhhhhhcccCC
Confidence 45666555 8899999977633 348999999995443 333333678899999887654322 467898888655
Q ss_pred ChhHHHHHHHHHhccCCCC
Q 021911 223 QPDQARILALNASYFLKAG 241 (305)
Q Consensus 223 ~~~~~~~l~~~a~~~LkpG 241 (305)
......++. ...+.+.+.
T Consensus 75 ~d~~N~~~~-~~~k~~~~~ 92 (132)
T d1lssa_ 75 KEEVNLMSS-LLAKSYGIN 92 (132)
T ss_dssp CHHHHHHHH-HHHHHTTCC
T ss_pred cHHHHHHHH-HHHHHcCCc
Confidence 544333333 444556776
|
| >d1qora2 c.2.1.1 (A:113-291) Quinone oxidoreductase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Quinone oxidoreductase species: Escherichia coli [TaxId: 562]
Probab=94.34 E-value=0.01 Score=46.68 Aligned_cols=96 Identities=19% Similarity=0.164 Sum_probs=60.2
Q ss_pred CCCCCCEEEEEecC--CCccHHHHHhhhCCCcEEEEEeCChHHHHHHHHHHHcCCCeEEEEccCCCCccc---c--cCCC
Q 021911 140 WIKPGARVLYLGAA--SGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKRTNVIPIIEDARHPAKY---R--MLVG 212 (305)
Q Consensus 140 ~~~~g~~VLDlG~G--~G~~t~~la~~~~~~~~V~avD~s~~~~~~l~~~a~~~~nI~~~~~D~~~~~~~---~--~~~~ 212 (305)
.++|+++||=.|++ .|..+..+|+..+ ++|++++.|+...+. +++..--+.+ |..+.+.. . ....
T Consensus 25 ~l~~g~~Vlv~ga~g~vG~~~iqlak~~G--a~Vi~~~~s~~k~~~----~~~lGa~~vi--~~~~~d~~~~v~~~t~g~ 96 (179)
T d1qora2 25 EIKPDEQFLFHAAAGGVGLIACQWAKALG--AKLIGTVGTAQKAQS----ALKAGAWQVI--NYREEDLVERLKEITGGK 96 (179)
T ss_dssp CCCTTCEEEESSTTBHHHHHHHHHHHHHT--CEEEEEESSHHHHHH----HHHHTCSEEE--ETTTSCHHHHHHHHTTTC
T ss_pred CCCCCCEEEEEccccccchHHHHHHHHhC--CeEeecccchHHHHH----HHhcCCeEEE--ECCCCCHHHHHHHHhCCC
Confidence 67899999999766 4668888888865 689999999854333 3332111222 32222111 0 1235
Q ss_pred cEeEEEEeCCChhHHHHHHHHHhccCCCCcEEEEEE
Q 021911 213 MVDVIFSDVAQPDQARILALNASYFLKAGGHFVISI 248 (305)
Q Consensus 213 ~fD~V~~d~~~~~~~~~l~~~a~~~LkpGG~lv~s~ 248 (305)
.+|+|+.....+. +. .+...|+++|++++..
T Consensus 97 g~d~v~d~~g~~~----~~-~~~~~l~~~G~~v~~g 127 (179)
T d1qora2 97 KVRVVYDSVGRDT----WE-RSLDCLQRRGLMVSFG 127 (179)
T ss_dssp CEEEEEECSCGGG----HH-HHHHTEEEEEEEEECC
T ss_pred CeEEEEeCccHHH----HH-HHHHHHhcCCeeeecc
Confidence 7998776654332 23 5567999999987753
|
| >d1p0fa2 c.2.1.1 (A:1164-1337) Alcohol dehydrogenase {Frog (Rana perezi) [TaxId: 8403]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Frog (Rana perezi) [TaxId: 8403]
Probab=94.28 E-value=0.081 Score=41.34 Aligned_cols=100 Identities=14% Similarity=0.024 Sum_probs=60.2
Q ss_pred CCCCCCEEEEEecCCCc-cHHHHHhhhCCCcEEEEEeCChHHHHHHHHHHHcCCCeEEEEccCCCC--c-c-cccCCCcE
Q 021911 140 WIKPGARVLYLGAASGT-TVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKRTNVIPIIEDARHP--A-K-YRMLVGMV 214 (305)
Q Consensus 140 ~~~~g~~VLDlG~G~G~-~t~~la~~~~~~~~V~avD~s~~~~~~l~~~a~~~~nI~~~~~D~~~~--~-~-~~~~~~~f 214 (305)
.++++++||-+|||+-. .+..+++..+ ..+|+++|.++ +-++.+++.--..++...-.+. . . .......+
T Consensus 24 ~~~~G~~VlV~GaGgvGl~a~~~ak~~G-~~~Vi~~d~~~----~kl~~a~~lGa~~~i~~~~~d~~~~~~~~~~~~~G~ 98 (174)
T d1p0fa2 24 KVTPGSTCAVFGLGGVGFSAIVGCKAAG-ASRIIGVGTHK----DKFPKAIELGATECLNPKDYDKPIYEVICEKTNGGV 98 (174)
T ss_dssp CCCTTCEEEEECCSHHHHHHHHHHHHHT-CSEEEEECSCG----GGHHHHHHTTCSEEECGGGCSSCHHHHHHHHTTSCB
T ss_pred CCCCCCEEEEECCCchhHHHHHHHHHcC-CceeeccCChH----HHHHHHHHcCCcEEEcCCCchhHHHHHHHHhcCCCC
Confidence 68999999999997544 5556666665 35899999998 4455666653233332211111 0 0 01123479
Q ss_pred eEEEEeCCChhHHHHHHHHHhccC-CCCcEEEEEE
Q 021911 215 DVIFSDVAQPDQARILALNASYFL-KAGGHFVISI 248 (305)
Q Consensus 215 D~V~~d~~~~~~~~~l~~~a~~~L-kpGG~lv~s~ 248 (305)
|+||-....+... . ++...| +++|.+++.-
T Consensus 99 d~vid~~g~~~~~---~-~~~~~~~~~~G~~v~vG 129 (174)
T d1p0fa2 99 DYAVECAGRIETM---M-NALQSTYCGSGVTVVLG 129 (174)
T ss_dssp SEEEECSCCHHHH---H-HHHHTBCTTTCEEEECC
T ss_pred cEEEEcCCCchHH---H-HHHHHHHHhcCceEEEE
Confidence 9999777665433 2 333444 5568888753
|
| >d1iz0a2 c.2.1.1 (A:99-269) Quinone oxidoreductase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Quinone oxidoreductase species: Thermus thermophilus [TaxId: 274]
Probab=94.24 E-value=0.012 Score=46.14 Aligned_cols=97 Identities=18% Similarity=0.174 Sum_probs=58.4
Q ss_pred cccCCCCCCEEEEEec-C-CCccHHHHHhhhCCCcEEEEEeCChHHHHHHHHHHHcCCCeEEEEccCCCCcccccCCCcE
Q 021911 137 DNIWIKPGARVLYLGA-A-SGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKRTNVIPIIEDARHPAKYRMLVGMV 214 (305)
Q Consensus 137 ~~~~~~~g~~VLDlG~-G-~G~~t~~la~~~~~~~~V~avD~s~~~~~~l~~~a~~~~nI~~~~~D~~~~~~~~~~~~~f 214 (305)
++..++|+++||-.|+ | .|..+..+|+..+ .+|++++.++... +.+++..--..+ |..+..........+
T Consensus 21 ~~~~~~~g~~VlI~ga~G~vG~~aiqlak~~G--~~vi~~~~~~~~~----~~~~~lGa~~~i--~~~~~~~~~~~~~g~ 92 (171)
T d1iz0a2 21 KRAQARPGEKVLVQAAAGALGTAAVQVARAMG--LRVLAAASRPEKL----ALPLALGAEEAA--TYAEVPERAKAWGGL 92 (171)
T ss_dssp HHTTCCTTCEEEESSTTBHHHHHHHHHHHHTT--CEEEEEESSGGGS----HHHHHTTCSEEE--EGGGHHHHHHHTTSE
T ss_pred HHhCCCCCCEEEEEeccccchhhhhhhhcccc--ccccccccccccc----ccccccccceee--ehhhhhhhhhccccc
Confidence 3346899999999885 3 3567777888764 5899999887433 333332110111 222221111123579
Q ss_pred eEEEEeCCChhHHHHHHHHHhccCCCCcEEEEE
Q 021911 215 DVIFSDVAQPDQARILALNASYFLKAGGHFVIS 247 (305)
Q Consensus 215 D~V~~d~~~~~~~~~l~~~a~~~LkpGG~lv~s 247 (305)
|+||-... +. +. .+.+.|+|+|++++.
T Consensus 93 D~v~d~~G-~~----~~-~~~~~l~~~G~~v~~ 119 (171)
T d1iz0a2 93 DLVLEVRG-KE----VE-ESLGLLAHGGRLVYI 119 (171)
T ss_dssp EEEEECSC-TT----HH-HHHTTEEEEEEEEEC
T ss_pred cccccccc-hh----HH-HHHHHHhcCCcEEEE
Confidence 99885332 22 34 667899999999874
|
| >d2fzwa2 c.2.1.1 (A:163-338) Alcohol dehydrogenase {Human (Homo sapiens), different isozymes [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Human (Homo sapiens), different isozymes [TaxId: 9606]
Probab=94.06 E-value=0.12 Score=39.82 Aligned_cols=101 Identities=18% Similarity=0.181 Sum_probs=60.9
Q ss_pred cCCCCCCEEEEEecC-CCccHHHHHhhhCCCcEEEEEeCChHHHHHHHHHHHcCCCeEEEEcc-CCCCcc---cccCCCc
Q 021911 139 IWIKPGARVLYLGAA-SGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKRTNVIPIIED-ARHPAK---YRMLVGM 213 (305)
Q Consensus 139 ~~~~~g~~VLDlG~G-~G~~t~~la~~~~~~~~V~avD~s~~~~~~l~~~a~~~~nI~~~~~D-~~~~~~---~~~~~~~ 213 (305)
..++|+++||-.||| .|.++..++..++ ...|+++|.++.. ++.+++.---.++..+ ..+... .......
T Consensus 24 ~~~~~G~tVlI~GaGGvG~~aiq~ak~~G-~~~vi~~~~~~~k----~~~ak~lGa~~~i~~~~~~~~~~~~~~~~~~~g 98 (176)
T d2fzwa2 24 AKLEPGSVCAVFGLGGVGLAVIMGCKVAG-ASRIIGVDINKDK----FARAKEFGATECINPQDFSKPIQEVLIEMTDGG 98 (176)
T ss_dssp TCCCTTCEEEEECCSHHHHHHHHHHHHHT-CSEEEEECSCGGG----HHHHHHHTCSEEECGGGCSSCHHHHHHHHTTSC
T ss_pred hCCCCCCEEEEecchhHHHHHHHHHHHHh-cCceEEEcccHHH----HHHHHHhCCcEEEeCCchhhHHHHHHHHHcCCC
Confidence 368999999999886 3345666777764 3589999999844 3444433222233221 111110 0112357
Q ss_pred EeEEEEeCCChhHHHHHHHHHhccCCCCcEEEEEE
Q 021911 214 VDVIFSDVAQPDQARILALNASYFLKAGGHFVISI 248 (305)
Q Consensus 214 fD~V~~d~~~~~~~~~l~~~a~~~LkpGG~lv~s~ 248 (305)
+|+||-....+... . .+..++++++.+++..
T Consensus 99 ~D~vid~~G~~~~~---~-~~~~~~~~g~~~~~v~ 129 (176)
T d2fzwa2 99 VDYSFECIGNVKVM---R-AALEACHKGWGVSVVV 129 (176)
T ss_dssp BSEEEECSCCHHHH---H-HHHHTBCTTTCEEEEC
T ss_pred CcEeeecCCCHHHH---H-HHHHhhcCCceeEEEE
Confidence 99999877655433 3 5667899998877653
|
| >d1v3va2 c.2.1.1 (A:113-294) Leukotriene b4 12-hydroxydehydrogenase/prostaglandin 15-keto reductase {Guinea pig (Cavia porcellus) [TaxId: 10141]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Leukotriene b4 12-hydroxydehydrogenase/prostaglandin 15-keto reductase species: Guinea pig (Cavia porcellus) [TaxId: 10141]
Probab=93.86 E-value=0.085 Score=41.32 Aligned_cols=97 Identities=20% Similarity=0.179 Sum_probs=62.2
Q ss_pred CCCCCCEEEEEecCC--CccHHHHHhhhCCCcEEEEEeCChHHHHHHHHHHHcCCCeEEEEccCCCCcc---cccCCCcE
Q 021911 140 WIKPGARVLYLGAAS--GTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKRTNVIPIIEDARHPAK---YRMLVGMV 214 (305)
Q Consensus 140 ~~~~g~~VLDlG~G~--G~~t~~la~~~~~~~~V~avD~s~~~~~~l~~~a~~~~nI~~~~~D~~~~~~---~~~~~~~f 214 (305)
+++++++||-.|++. |..+..+|+..+ ++|+++.-+++. .+.+++...-+.+..+-.+..+ .......+
T Consensus 26 ~v~~G~~VlV~ga~ggvG~~aiqlak~~G--a~vi~~~~~~~~----~~~~~~~Ga~~vi~~~~~~~~~~~~~~~~~~Gv 99 (182)
T d1v3va2 26 GVKGGETVLVSAAAGAVGSVVGQIAKLKG--CKVVGAAGSDEK----IAYLKQIGFDAAFNYKTVNSLEEALKKASPDGY 99 (182)
T ss_dssp CCCSSCEEEESSTTSHHHHHHHHHHHHTT--CEEEEEESSHHH----HHHHHHTTCSEEEETTSCSCHHHHHHHHCTTCE
T ss_pred CCCCCCEEEEEeCCCchhHHHHHHHHccC--CEEEEeCCCHHH----HHHHHhhhhhhhcccccccHHHHHHHHhhcCCC
Confidence 678999999888755 457778888754 699999988833 4444444222333332222211 11124579
Q ss_pred eEEEEeCCChhHHHHHHHHHhccCCCCcEEEEE
Q 021911 215 DVIFSDVAQPDQARILALNASYFLKAGGHFVIS 247 (305)
Q Consensus 215 D~V~~d~~~~~~~~~l~~~a~~~LkpGG~lv~s 247 (305)
|+||-.+. . +.+. .+.+.|+++|+++..
T Consensus 100 d~v~D~vG-~---~~~~-~~~~~l~~~G~~v~~ 127 (182)
T d1v3va2 100 DCYFDNVG-G---EFLN-TVLSQMKDFGKIAIC 127 (182)
T ss_dssp EEEEESSC-H---HHHH-HHGGGEEEEEEEEEC
T ss_pred ceeEEecC-c---hhhh-hhhhhccCCCeEEee
Confidence 99987664 2 2344 777899999999985
|
| >d1d1ta2 c.2.1.1 (A:163-338) Alcohol dehydrogenase {Human (Homo sapiens), different isozymes [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Human (Homo sapiens), different isozymes [TaxId: 9606]
Probab=93.67 E-value=0.12 Score=40.47 Aligned_cols=102 Identities=16% Similarity=0.123 Sum_probs=60.6
Q ss_pred cCCCCCCEEEEEecCCCc-cHHHHHhhhCCCcEEEEEeCChHHHHHHHHHHHcCCCeEEEE-ccCCCCcc---cccCCCc
Q 021911 139 IWIKPGARVLYLGAASGT-TVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKRTNVIPII-EDARHPAK---YRMLVGM 213 (305)
Q Consensus 139 ~~~~~g~~VLDlG~G~G~-~t~~la~~~~~~~~V~avD~s~~~~~~l~~~a~~~~nI~~~~-~D~~~~~~---~~~~~~~ 213 (305)
..++++++||-+|||.-. .+..++...+ ..+|+++|.++ +-++.+++.--..++. .|...... .......
T Consensus 25 ~~~~~g~tVlI~G~GgvGl~ai~~ak~~G-~~~Vi~vd~~~----~kl~~Ak~~GA~~~in~~~~~~~~~~~~~~~~g~G 99 (176)
T d1d1ta2 25 GKVKPGSTCVVFGLGGVGLSVIMGCKSAG-ASRIIGIDLNK----DKFEKAMAVGATECISPKDSTKPISEVLSEMTGNN 99 (176)
T ss_dssp SCCCTTCEEEEECCSHHHHHHHHHHHHTT-CSEEEEECSCG----GGHHHHHHHTCSEEECGGGCSSCHHHHHHHHHTSC
T ss_pred hCCCCCCEEEEECCCchhHHHHHHHHHcC-CceEEEecCcH----HHHHHHHhcCCcEEECccccchHHHHHHHHhcccc
Confidence 368899999999997544 5555666653 35899999999 4555565542222332 12111111 0012357
Q ss_pred EeEEEEeCCChhHHHHHHHHHhccCCCCcEEEEEE
Q 021911 214 VDVIFSDVAQPDQARILALNASYFLKAGGHFVISI 248 (305)
Q Consensus 214 fD~V~~d~~~~~~~~~l~~~a~~~LkpGG~lv~s~ 248 (305)
+|+|+-....+...+. .+..+++.+|++++.-
T Consensus 100 ~d~vi~~~g~~~~~~~---a~~~~~~~~G~~v~vG 131 (176)
T d1d1ta2 100 VGYTFEVIGHLETMID---ALASCHMNYGTSVVVG 131 (176)
T ss_dssp CCEEEECSCCHHHHHH---HHTTSCTTTCEEEECS
T ss_pred ceEEEEeCCchHHHHH---HHHHhhcCCeEEEEEE
Confidence 9999987776654321 2234556668888863
|
| >d2f1ka2 c.2.1.6 (A:1-165) Prephenate dehydrogenase TyrA {Synechocystis sp. pcc 6803 [TaxId: 1148]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Prephenate dehydrogenase TyrA species: Synechocystis sp. pcc 6803 [TaxId: 1148]
Probab=93.66 E-value=0.11 Score=39.85 Aligned_cols=88 Identities=15% Similarity=0.077 Sum_probs=53.0
Q ss_pred CEEEEEecCCCccHHHHHhhhC-CCcEEEEEeCChHHHHHHHHHHHcCCCeEEEEccCCCCcccccCCCcEeEEEEeCCC
Q 021911 145 ARVLYLGAASGTTVSHVSDIVG-PNGVVYAVEFSHRSGRDLVNMAKKRTNVIPIIEDARHPAKYRMLVGMVDVIFSDVAQ 223 (305)
Q Consensus 145 ~~VLDlG~G~G~~t~~la~~~~-~~~~V~avD~s~~~~~~l~~~a~~~~nI~~~~~D~~~~~~~~~~~~~fD~V~~d~~~ 223 (305)
++|.=+|+ |.....+|..+. ...+|+++|.++. .++.+++...+.....+.. .....|+||...|.
T Consensus 1 MkI~iIG~--G~mG~~lA~~l~~~g~~V~~~d~~~~----~~~~a~~~~~~~~~~~~~~-------~~~~~DiIilavp~ 67 (165)
T d2f1ka2 1 MKIGVVGL--GLIGASLAGDLRRRGHYLIGVSRQQS----TCEKAVERQLVDEAGQDLS-------LLQTAKIIFLCTPI 67 (165)
T ss_dssp CEEEEECC--SHHHHHHHHHHHHTTCEEEEECSCHH----HHHHHHHTTSCSEEESCGG-------GGTTCSEEEECSCH
T ss_pred CEEEEEee--cHHHHHHHHHHHHCCCEEEEEECCch----HHHHHHHhhccceeeeecc-------cccccccccccCcH
Confidence 45666765 556665554432 2348999999984 3444444332222222211 13578999998876
Q ss_pred hhHHHHHHHHHhccCCCCcEEEEE
Q 021911 224 PDQARILALNASYFLKAGGHFVIS 247 (305)
Q Consensus 224 ~~~~~~l~~~a~~~LkpGG~lv~s 247 (305)
..-.+++. ++...|+++- +++.
T Consensus 68 ~~~~~vl~-~l~~~l~~~~-iv~~ 89 (165)
T d2f1ka2 68 QLILPTLE-KLIPHLSPTA-IVTD 89 (165)
T ss_dssp HHHHHHHH-HHGGGSCTTC-EEEE
T ss_pred hhhhhhhh-hhhhhccccc-ceee
Confidence 65566666 8888898885 4444
|
| >d1xa0a2 c.2.1.1 (A:119-294) B. subtilis YhfP homologue {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: B. subtilis YhfP homologue species: Bacillus stearothermophilus [TaxId: 1422]
Probab=93.64 E-value=0.075 Score=41.84 Aligned_cols=98 Identities=13% Similarity=0.017 Sum_probs=58.6
Q ss_pred CCCCCCEEEEEecC--CCccHHHHHhhhCCCcEEEEEeCChHHHHHHHHHHHcCCCeEEEEccCCCCcc-cccCCCcEeE
Q 021911 140 WIKPGARVLYLGAA--SGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKRTNVIPIIEDARHPAK-YRMLVGMVDV 216 (305)
Q Consensus 140 ~~~~g~~VLDlG~G--~G~~t~~la~~~~~~~~V~avD~s~~~~~~l~~~a~~~~nI~~~~~D~~~~~~-~~~~~~~fD~ 216 (305)
..+++++||-.|++ -|.++..||+.++ ++|+++.-|+.. .+.+++...-..+..+-..... .......||+
T Consensus 28 ~~~~g~~VLI~gaaGGVG~~aiQlak~~G--a~Viat~~s~~k----~~~~~~lGa~~vi~~~~~~~~~~~~~~~~gvD~ 101 (176)
T d1xa0a2 28 LTPERGPVLVTGATGGVGSLAVSMLAKRG--YTVEASTGKAAE----HDYLRVLGAKEVLAREDVMAERIRPLDKQRWAA 101 (176)
T ss_dssp CCGGGCCEEESSTTSHHHHHHHHHHHHTT--CCEEEEESCTTC----HHHHHHTTCSEEEECC---------CCSCCEEE
T ss_pred CCCCCCEEEEEeccchHHHHHHHHHHHcC--CceEEecCchHH----HHHHHhcccceeeecchhHHHHHHHhhccCcCE
Confidence 46678999999865 4557788888864 689999887733 3333333111122111100000 1112468999
Q ss_pred EEEeCCChhHHHHHHHHHhccCCCCcEEEEEE
Q 021911 217 IFSDVAQPDQARILALNASYFLKAGGHFVISI 248 (305)
Q Consensus 217 V~~d~~~~~~~~~l~~~a~~~LkpGG~lv~s~ 248 (305)
|+-.+.-+... .+.+.|+|+|+++..-
T Consensus 102 vid~vgg~~~~-----~~l~~l~~~Griv~~G 128 (176)
T d1xa0a2 102 AVDPVGGRTLA-----TVLSRMRYGGAVAVSG 128 (176)
T ss_dssp EEECSTTTTHH-----HHHHTEEEEEEEEECS
T ss_pred EEEcCCchhHH-----HHHHHhCCCceEEEee
Confidence 88777655544 4556999999999865
|
| >d2jhfa2 c.2.1.1 (A:164-339) Alcohol dehydrogenase {Horse (Equus caballus) [TaxId: 9796]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Horse (Equus caballus) [TaxId: 9796]
Probab=93.61 E-value=0.068 Score=41.59 Aligned_cols=100 Identities=20% Similarity=0.198 Sum_probs=58.6
Q ss_pred cCCCCCCEEEEEecCCCc-cHHHHHhhhCCCcEEEEEeCChHHHHHHHHHHHcCCCeEEEEc-cCCCCcc---cccCCCc
Q 021911 139 IWIKPGARVLYLGAASGT-TVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKRTNVIPIIE-DARHPAK---YRMLVGM 213 (305)
Q Consensus 139 ~~~~~g~~VLDlG~G~G~-~t~~la~~~~~~~~V~avD~s~~~~~~l~~~a~~~~nI~~~~~-D~~~~~~---~~~~~~~ 213 (305)
..++|+++||-+|||... ....++..++ ..+|+++|.++ +-.+.+++..-...+.. +..+... .......
T Consensus 24 ~~vk~GdtVlV~GaGG~G~~~~~~~~~~g-~~~Vi~~~~~~----~k~~~a~~~Ga~~~i~~~~~~~~~~~~~~~~~~~G 98 (176)
T d2jhfa2 24 AKVTQGSTCAVFGLGGVGLSVIMGCKAAG-AARIIGVDINK----DKFAKAKEVGATECVNPQDYKKPIQEVLTEMSNGG 98 (176)
T ss_dssp TCCCTTCEEEEECCSHHHHHHHHHHHHTT-CSEEEEECSCG----GGHHHHHHTTCSEEECGGGCSSCHHHHHHHHTTSC
T ss_pred hCCCCCCEEEEECCCCcHHHHHHHHHHcC-CceEEeecCcH----HHHHHHHHhCCeeEEecCCchhHHHHHHHHHhcCC
Confidence 368999999999996544 4445555543 45999999998 33445555432233321 2222111 0112357
Q ss_pred EeEEEEeCCChhHHHHHHHHHhccCCCC-cEEEEE
Q 021911 214 VDVIFSDVAQPDQARILALNASYFLKAG-GHFVIS 247 (305)
Q Consensus 214 fD~V~~d~~~~~~~~~l~~~a~~~LkpG-G~lv~s 247 (305)
+|+||-....+...+ .+...++++ |.+++.
T Consensus 99 ~D~vid~~G~~~~~~----~a~~~~~~~~g~~~~~ 129 (176)
T d2jhfa2 99 VDFSFEVIGRLDTMV----TALSCCQEAYGVSVIV 129 (176)
T ss_dssp BSEEEECSCCHHHHH----HHHHHBCTTTCEEEEC
T ss_pred CCEEEecCCchhHHH----HHHHHHhcCCcceEEe
Confidence 999998777665442 444677776 455444
|
| >d1pjca1 c.2.1.4 (A:136-303) L-alanine dehydrogenase {Phormidium lapideum [TaxId: 32060]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: L-alanine dehydrogenase species: Phormidium lapideum [TaxId: 32060]
Probab=93.57 E-value=0.016 Score=45.56 Aligned_cols=96 Identities=16% Similarity=0.205 Sum_probs=61.6
Q ss_pred CCCEEEEEecCC-CccHHHHHhhhCCCcEEEEEeCChHHHHHHHHHHHcCCCeEEEEccCCCCcccccCCCcEeEEEEeC
Q 021911 143 PGARVLYLGAAS-GTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKRTNVIPIIEDARHPAKYRMLVGMVDVIFSDV 221 (305)
Q Consensus 143 ~g~~VLDlG~G~-G~~t~~la~~~~~~~~V~avD~s~~~~~~l~~~a~~~~nI~~~~~D~~~~~~~~~~~~~fD~V~~d~ 221 (305)
+..+||-||+|. |..+...|..++ ..|+++|.++..++++...... ++++...+-....+. ....|+||..+
T Consensus 31 ~pa~V~ViGaGvaG~~A~~~A~~lG--A~V~~~D~~~~~l~~l~~~~~~--~~~~~~~~~~~l~~~---~~~aDivI~aa 103 (168)
T d1pjca1 31 KPGKVVILGGGVVGTEAAKMAVGLG--AQVQIFDINVERLSYLETLFGS--RVELLYSNSAEIETA---VAEADLLIGAV 103 (168)
T ss_dssp CCCEEEEECCSHHHHHHHHHHHHTT--CEEEEEESCHHHHHHHHHHHGG--GSEEEECCHHHHHHH---HHTCSEEEECC
T ss_pred CCcEEEEECCChHHHHHHHHHhhCC--CEEEEEeCcHHHHHHHHHhhcc--cceeehhhhhhHHHh---hccCcEEEEee
Confidence 358999999984 556666777765 6999999999776665554443 566655543333221 35789999866
Q ss_pred CChh--HHHHHHHHHhccCCCCcEEE
Q 021911 222 AQPD--QARILALNASYFLKAGGHFV 245 (305)
Q Consensus 222 ~~~~--~~~~l~~~a~~~LkpGG~lv 245 (305)
..|- ...++..++.+.+|||..++
T Consensus 104 lipG~~aP~lIt~~mv~~Mk~GSVIV 129 (168)
T d1pjca1 104 LVPGRRAPILVPASLVEQMRTGSVIV 129 (168)
T ss_dssp CCTTSSCCCCBCHHHHTTSCTTCEEE
T ss_pred ecCCcccCeeecHHHHhhcCCCcEEE
Confidence 6331 11222335668999996554
|
| >d1m6ex_ c.66.1.35 (X:) Salicylic acid carboxyl methyltransferase (SAMT) {Clarkia breweri [TaxId: 36903]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Salicylic acid carboxyl methyltransferase (SAMT) domain: Salicylic acid carboxyl methyltransferase (SAMT) species: Clarkia breweri [TaxId: 36903]
Probab=93.55 E-value=0.081 Score=46.50 Aligned_cols=103 Identities=17% Similarity=0.146 Sum_probs=55.3
Q ss_pred CEEEEEecCCCccHHHHHhhh---------------CCCcEEEEEeCChHHHHHHHHHHHcC---CCeEEEEccCCCCcc
Q 021911 145 ARVLYLGAASGTTVSHVSDIV---------------GPNGVVYAVEFSHRSGRDLVNMAKKR---TNVIPIIEDARHPAK 206 (305)
Q Consensus 145 ~~VLDlG~G~G~~t~~la~~~---------------~~~~~V~avD~s~~~~~~l~~~a~~~---~nI~~~~~D~~~~~~ 206 (305)
.+|.|+||++|..|+.+.+.+ .+..+|+--|+-..--..+.+..... ..-.++.+-...+..
T Consensus 53 ~~IADlGCS~G~Ntl~~v~~iI~~i~~~~~~~~~~~~pe~qvf~nDLP~NDFNtLF~~L~~~~~~~~~~f~~gvpGSFY~ 132 (359)
T d1m6ex_ 53 LAIADLGCSSGPNALFAVTELIKTVEELRKKMGRENSPEYQIFLNDLPGNDFNAIFRSLPIENDVDGVCFINGVPGSFYG 132 (359)
T ss_dssp ECCEEESCCSSTTTTTGGGTTHHHHHHHHHSSSCSSCCEEEEEEEECTTSCHHHHHTTTTTSCSCTTCEEEEEEESCSSS
T ss_pred eEEEEeCCCCCccHHHHHHHHHHHHHHHHHhcCCCCCCeEEEEeCCCCcchHHHHHHhccccccCCCCeEEEecCCchhh
Confidence 679999999999885333211 23456776777532111222222111 122333332222222
Q ss_pred cccCCCcEeEEEEeCC------------------------------------ChhHHHHHHHHHhccCCCCcEEEEEE
Q 021911 207 YRMLVGMVDVIFSDVA------------------------------------QPDQARILALNASYFLKAGGHFVISI 248 (305)
Q Consensus 207 ~~~~~~~fD~V~~d~~------------------------------------~~~~~~~l~~~a~~~LkpGG~lv~s~ 248 (305)
--++..++|++++..+ ..|...+|. .=++=|+|||+|+++.
T Consensus 133 rLfP~~Slh~~~Ss~alHWLS~vP~~l~~n~~~i~~~~~~~~~v~~ay~~Qf~~D~~~FL~-~Ra~ELv~GG~mvl~~ 209 (359)
T d1m6ex_ 133 RLFPRNTLHFIHSSYSLMWLSQVPIGIESNKGNIYMANTCPQSVLNAYYKQFQEDHALFLR-CRAQEVVPGGRMVLTI 209 (359)
T ss_dssp CCSCTTCBSCEEEESCTTBCSSCCSCCCCCTTTTSSCSSSCCTTSCCSHHHHHHHHHHHHH-HHHHHBCTTCEEEEEE
T ss_pred hcCCCCceEEeeehhhhhhhhcCCccccCCCCcEEEcCCCCHHHHHHHHHHHHHHHHHHHH-HHHHHhcCCcEEEEEE
Confidence 2234578888887444 013334444 4445699999999987
|
| >d1pqwa_ c.2.1.1 (A:) Putative enoyl reductase domain of polyketide synthase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Putative enoyl reductase domain of polyketide synthase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=93.20 E-value=0.14 Score=39.78 Aligned_cols=97 Identities=21% Similarity=0.221 Sum_probs=59.9
Q ss_pred CCCCCCEEEEEec--CCCccHHHHHhhhCCCcEEEEEeCChHHHHHHHHHHHcCCCeEEEEccCCCCccc---ccCCCcE
Q 021911 140 WIKPGARVLYLGA--ASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKRTNVIPIIEDARHPAKY---RMLVGMV 214 (305)
Q Consensus 140 ~~~~g~~VLDlG~--G~G~~t~~la~~~~~~~~V~avD~s~~~~~~l~~~a~~~~nI~~~~~D~~~~~~~---~~~~~~f 214 (305)
.++++++||-.|+ +.|..+..+|..++ ++|++++-+++ -.+.+++..--..+...-.++.+. ......|
T Consensus 22 ~~~~g~~VlI~ga~g~vG~~~iqla~~~g--~~vi~~~~~~~----~~~~l~~~Ga~~vi~~~~~~~~~~v~~~t~~~g~ 95 (183)
T d1pqwa_ 22 RLSPGERVLIHSATGGVGMAAVSIAKMIG--ARIYTTAGSDA----KREMLSRLGVEYVGDSRSVDFADEILELTDGYGV 95 (183)
T ss_dssp CCCTTCEEEETTTTSHHHHHHHHHHHHHT--CEEEEEESSHH----HHHHHHTTCCSEEEETTCSTHHHHHHHHTTTCCE
T ss_pred CCCCCCEEEEECCCCCcccccchhhcccc--ccceeeecccc----cccccccccccccccCCccCHHHHHHHHhCCCCE
Confidence 6789999999874 34567778888765 58888887773 234455442122222221111111 0123579
Q ss_pred eEEEEeCCChhHHHHHHHHHhccCCCCcEEEEE
Q 021911 215 DVIFSDVAQPDQARILALNASYFLKAGGHFVIS 247 (305)
Q Consensus 215 D~V~~d~~~~~~~~~l~~~a~~~LkpGG~lv~s 247 (305)
|+|+.....+ .+. .+.++|+++|+++..
T Consensus 96 d~v~d~~g~~----~~~-~~~~~l~~~G~~v~~ 123 (183)
T d1pqwa_ 96 DVVLNSLAGE----AIQ-RGVQILAPGGRFIEL 123 (183)
T ss_dssp EEEEECCCTH----HHH-HHHHTEEEEEEEEEC
T ss_pred EEEEecccch----HHH-HHHHHhcCCCEEEEE
Confidence 9999877643 333 566899999999875
|
| >d2fy8a1 c.2.1.9 (A:116-244) Potassium channel-related protein MthK {Archaeon Methanothermobacter thermautotrophicus [TaxId: 145262]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Potassium channel NAD-binding domain domain: Potassium channel-related protein MthK species: Archaeon Methanothermobacter thermautotrophicus [TaxId: 145262]
Probab=93.13 E-value=0.11 Score=38.25 Aligned_cols=90 Identities=3% Similarity=-0.034 Sum_probs=64.1
Q ss_pred cCCCccHHHHHhhhCCCcEEEEEeCChHHHHHHHHHHHcCCCeEEEEccCCCCcccc-cCCCcEeEEEEeCCChhHHHHH
Q 021911 152 AASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKRTNVIPIIEDARHPAKYR-MLVGMVDVIFSDVAQPDQARIL 230 (305)
Q Consensus 152 ~G~G~~t~~la~~~~~~~~V~avD~s~~~~~~l~~~a~~~~nI~~~~~D~~~~~~~~-~~~~~fD~V~~d~~~~~~~~~l 230 (305)
||.|..+..+++.+. ...|+.+|.++.. .+.+.. .++.++.+|+++...+. .....++.|++..+...+...+
T Consensus 6 ~G~g~~g~~l~~~L~-~~~i~vi~~d~~~----~~~~~~-~~~~~i~Gd~~~~~~L~~a~i~~A~~vi~~~~~d~~n~~~ 79 (129)
T d2fy8a1 6 CGWSESTLECLRELR-GSEVFVLAEDENV----RKKVLR-SGANFVHGDPTRVSDLEKANVRGARAVIVNLESDSETIHC 79 (129)
T ss_dssp ESCCHHHHHHHHTSC-GGGEEEEESCTTH----HHHHHH-TTCEEEESCTTSHHHHHHTTCTTCSEEEECCSSHHHHHHH
T ss_pred ECCCHHHHHHHHHHc-CCCCEEEEcchHH----HHHHHh-cCccccccccCCHHHHHHhhhhcCcEEEEeccchhhhHHH
Confidence 688999999999885 4468889999844 333333 47889999998875432 2346789999877766555555
Q ss_pred HHHHhccCCCCcEEEEEE
Q 021911 231 ALNASYFLKAGGHFVISI 248 (305)
Q Consensus 231 ~~~a~~~LkpGG~lv~s~ 248 (305)
. .+.+.|.|.-+++..+
T Consensus 80 ~-~~~r~~~~~~~iia~~ 96 (129)
T d2fy8a1 80 I-LGIRKIDESVRIIAEA 96 (129)
T ss_dssp H-HHHHHHCSSSCEEEEC
T ss_pred H-HHHHHHCCCceEEEEE
Confidence 5 5666788887766664
|
| >d1cdoa2 c.2.1.1 (A:165-339) Alcohol dehydrogenase {Cod (Gadus callarias) [TaxId: 8053]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Cod (Gadus callarias) [TaxId: 8053]
Probab=93.09 E-value=0.093 Score=40.62 Aligned_cols=99 Identities=17% Similarity=0.109 Sum_probs=56.6
Q ss_pred cCCCCCCEEEEEecCCCcc-HHHHHhhhCCCcEEEEEeCChHHHHHHHHHHHcCCCeEEEEccCCC-C-cc--cccCCCc
Q 021911 139 IWIKPGARVLYLGAASGTT-VSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKRTNVIPIIEDARH-P-AK--YRMLVGM 213 (305)
Q Consensus 139 ~~~~~g~~VLDlG~G~G~~-t~~la~~~~~~~~V~avD~s~~~~~~l~~~a~~~~nI~~~~~D~~~-~-~~--~~~~~~~ 213 (305)
..++++++||=+|||++.. +..++... ....|+++|.++. -++.+++.---+++..+-.+ . .. .......
T Consensus 24 a~~k~g~~VlI~G~Gg~g~~~~~~~~~~-g~~~Vi~~~~~~~----rl~~a~~~GAd~~in~~~~~~~~~~~~~~~~~~G 98 (175)
T d1cdoa2 24 AKVEPGSTCAVFGLGAVGLAAVMGCHSA-GAKRIIAVDLNPD----KFEKAKVFGATDFVNPNDHSEPISQVLSKMTNGG 98 (175)
T ss_dssp TCCCTTCEEEEECCSHHHHHHHHHHHHT-TCSEEEEECSCGG----GHHHHHHTTCCEEECGGGCSSCHHHHHHHHHTSC
T ss_pred hCCCCCCEEEEEecCCccchHHHHHHHH-hhchheeecchHH----HHHHHHHcCCcEEEcCCCcchhHHHHHHhhccCC
Confidence 3689999999999988554 44445554 3568999999984 34555554222333221111 1 11 0011346
Q ss_pred EeEEEEeCCChhHHHHHHHHHhccCCCCcEEEE
Q 021911 214 VDVIFSDVAQPDQARILALNASYFLKAGGHFVI 246 (305)
Q Consensus 214 fD~V~~d~~~~~~~~~l~~~a~~~LkpGG~lv~ 246 (305)
+|+|+-....+...+ .+..++++++.+++
T Consensus 99 ~d~vid~~G~~~~~~----~a~~~~~~g~~~~~ 127 (175)
T d1cdoa2 99 VDFSLECVGNVGVMR----NALESCLKGWGVSV 127 (175)
T ss_dssp BSEEEECSCCHHHHH----HHHHTBCTTTCEEE
T ss_pred cceeeeecCCHHHHH----HHHHHhhCCCccee
Confidence 899987776554432 44456666544443
|
| >d2hmva1 c.2.1.9 (A:7-140) Ktn bsu222 {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Potassium channel NAD-binding domain domain: Ktn bsu222 species: Bacillus subtilis [TaxId: 1423]
Probab=93.05 E-value=0.072 Score=39.37 Aligned_cols=91 Identities=12% Similarity=0.024 Sum_probs=59.3
Q ss_pred cCCCccHHHHHhhhC-CCcEEEEEeCChHHHHHHHHHHHcCCCeEEEEccCCCCccccc-CCCcEeEEEEeCCChhHHHH
Q 021911 152 AASGTTVSHVSDIVG-PNGVVYAVEFSHRSGRDLVNMAKKRTNVIPIIEDARHPAKYRM-LVGMVDVIFSDVAQPDQARI 229 (305)
Q Consensus 152 ~G~G~~t~~la~~~~-~~~~V~avD~s~~~~~~l~~~a~~~~nI~~~~~D~~~~~~~~~-~~~~fD~V~~d~~~~~~~~~ 229 (305)
||-|.+...+++.+. ....|+.+|.++ +.++.++.. ....+..|++++..... ....+|.|++..+..+...+
T Consensus 6 iG~G~~G~~la~~L~~~g~~vvvid~d~----~~~~~~~~~-~~~~~~gd~~~~~~l~~a~i~~a~~vi~~~~~~~~~~~ 80 (134)
T d2hmva1 6 IGLGRFGGSIVKELHRMGHEVLAVDINE----EKVNAYASY-ATHAVIANATEENELLSLGIRNFEYVIVAIGANIQAST 80 (134)
T ss_dssp ECCSHHHHHHHHHHHHTTCCCEEEESCH----HHHHHTTTT-CSEEEECCTTCTTHHHHHTGGGCSEEEECCCSCHHHHH
T ss_pred ECCCHHHHHHHHHHHHCCCeEEEecCcH----HHHHHHHHh-CCcceeeecccchhhhccCCccccEEEEEcCchHHhHH
Confidence 466889999997753 234799999999 555555443 45677899988754321 23578999988887666666
Q ss_pred HHHHHhccCCCCcEEEEEE
Q 021911 230 LALNASYFLKAGGHFVISI 248 (305)
Q Consensus 230 l~~~a~~~LkpGG~lv~s~ 248 (305)
+...+.+ +.+...++..+
T Consensus 81 ~~~~~~~-~~~~~~iiar~ 98 (134)
T d2hmva1 81 LTTLLLK-ELDIPNIWVKA 98 (134)
T ss_dssp HHHHHHH-HTTCSEEEEEC
T ss_pred HHHHHHH-HcCCCcEEeec
Confidence 5524444 44554655543
|
| >d1booa_ c.66.1.11 (A:) m.PvuII N4 cytosine-specific DNA methyltransferase {Proteus vulgaris [TaxId: 585]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Type II DNA methylase domain: m.PvuII N4 cytosine-specific DNA methyltransferase species: Proteus vulgaris [TaxId: 585]
Probab=92.91 E-value=0.05 Score=46.00 Aligned_cols=86 Identities=13% Similarity=0.084 Sum_probs=51.6
Q ss_pred CeEEEEccCCCCcccccCCCcEeEEEEeCCC-----------------hhHHHHHHHHHhccCCCCcEEEEEEcccccCC
Q 021911 193 NVIPIIEDARHPAKYRMLVGMVDVIFSDVAQ-----------------PDQARILALNASYFLKAGGHFVISIKANCIDS 255 (305)
Q Consensus 193 nI~~~~~D~~~~~~~~~~~~~fD~V~~d~~~-----------------~~~~~~l~~~a~~~LkpGG~lv~s~~~~~i~~ 255 (305)
+=.++++|..+.... +.++++|+|+.|+|- ....+.+. .++++|||+|.+++.........
T Consensus 12 ~~~l~~GD~le~l~~-l~~~sVdli~tDPPY~~~~~~~~~~~~~~~y~~~~~~~l~-~~~rvLk~~G~i~i~~~~~~~~~ 89 (320)
T d1booa_ 12 NGSMYIGDSLELLES-FPEESISLVMTSPPFALQRKKEYGNLEQHEYVDWFLSFAK-VVNKKLKPDGSFVVDFGGAYMKG 89 (320)
T ss_dssp SEEEEESCHHHHGGG-SCSSCEEEEEECCCCSSSCSCSSCSCHHHHHHHHHHHHHH-HHHHHEEEEEEEEEEECCCEETT
T ss_pred CCEEEehhHHHHHhh-CccCCCCEEEECCCCcCCCCCCCCCCCHHHHHHHHHHHHH-HHHHhCcccCcccccccchhhcc
Confidence 346788898765433 456899999999992 11344565 89999999999999763211111
Q ss_pred CC-chhhhHHHHHHHHHHCCCcEeEE
Q 021911 256 TV-PAEAVFQSEVKKLQQDQFKPFEQ 280 (305)
Q Consensus 256 ~~-~~~~v~~~~~~~l~~~Gf~~~e~ 280 (305)
.. .....+......+...++.....
T Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~~~~~ 115 (320)
T d1booa_ 90 VPARSIYNFRVLIRMIDEVGFFLAED 115 (320)
T ss_dssp EEEECCHHHHHHHHHHHTTCCEEEEE
T ss_pred cccccchhHHHHHHHHHhcCceEeee
Confidence 11 11112233334556666765543
|
| >d1zkda1 c.66.1.52 (A:2-366) Hypothetical protein RPA4359 {Rhodopseudomonas palustris [TaxId: 1076]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: RPA4359-like domain: Hypothetical protein RPA4359 species: Rhodopseudomonas palustris [TaxId: 1076]
Probab=92.49 E-value=0.13 Score=45.05 Aligned_cols=53 Identities=15% Similarity=0.036 Sum_probs=35.8
Q ss_pred HHHHHHccccccCCCCCCEEEEEecCCCccHHHHHhhhC------CCcEEEEEeCChHH
Q 021911 128 LAAAVLGGVDNIWIKPGARVLYLGAASGTTVSHVSDIVG------PNGVVYAVEFSHRS 180 (305)
Q Consensus 128 l~a~ll~~l~~~~~~~g~~VLDlG~G~G~~t~~la~~~~------~~~~V~avD~s~~~ 180 (305)
++..++..+..+......+|||+|+|+|.++..++..+. ...+++-||.|+..
T Consensus 64 ia~~~~~~~~~~~~~~~~~ivE~GaG~G~La~dil~~l~~~~~~~~~~~~~~vE~s~~L 122 (365)
T d1zkda1 64 LGLWSASVWKAADEPQTLRLIEIGPGRGTMMADALRALRVLPILYQSLSVHLVEINPVL 122 (365)
T ss_dssp HHHHHHHHHHHTTCCSSEEEEEECCTTSHHHHHHHHHHTTSHHHHTTEEEEEECCCHHH
T ss_pred HHHHHHHHHHHhCCCccceEEecCCcccHHHHhhhhhhcccccccccceEEEeccchhH
Confidence 333444333333344457899999999999988877653 23468899999943
|
| >d1vj1a2 c.2.1.1 (A:125-311) Putative zinc-binding alcohol dehydrogenase {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Putative zinc-binding alcohol dehydrogenase species: Mouse (Mus musculus) [TaxId: 10090]
Probab=91.78 E-value=0.11 Score=40.99 Aligned_cols=97 Identities=16% Similarity=0.219 Sum_probs=58.1
Q ss_pred CCCCC--CEEEEEec--CCCccHHHHHhhhCCCcEEEEEeCChHHHHHHHHHHHcCCCeEEEEccCCCCccc----ccCC
Q 021911 140 WIKPG--ARVLYLGA--ASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKRTNVIPIIEDARHPAKY----RMLV 211 (305)
Q Consensus 140 ~~~~g--~~VLDlG~--G~G~~t~~la~~~~~~~~V~avD~s~~~~~~l~~~a~~~~nI~~~~~D~~~~~~~----~~~~ 211 (305)
.++++ ++||-.|+ |.|..+..+|+.++. ..|+++..+++.... .++....-..+ |..+.+.. ....
T Consensus 25 ~~~~G~~etVLI~gaaGgVG~~aiQlak~~Ga-~~vi~~~~~~e~~~~---l~~~~gad~vi--~~~~~~~~~~~~~~~~ 98 (187)
T d1vj1a2 25 HISAGSNQTMVVSGAAGACGSLAGQIGHLLGC-SRVVGICGTQEKCLF---LTSELGFDAAV--NYKTGNVAEQLREACP 98 (187)
T ss_dssp CCCTTSCCEEEESSTTSTTGGGHHHHHHHTTC-SEEEEEESSHHHHHH---HHHHSCCSEEE--ETTSSCHHHHHHHHCT
T ss_pred CCCCCCCCEEEEECCCchhhHHHHHHHHHcCC-cceecccchHHHHhh---hhhcccceEEe--eccchhHHHHHHHHhc
Confidence 45665 78998774 577899999998753 367777877643333 23222111222 22221110 0123
Q ss_pred CcEeEEEEeCCChhHHHHHHHHHhccCCCCcEEEEE
Q 021911 212 GMVDVIFSDVAQPDQARILALNASYFLKAGGHFVIS 247 (305)
Q Consensus 212 ~~fD~V~~d~~~~~~~~~l~~~a~~~LkpGG~lv~s 247 (305)
..+|+|+-.... +.+. .+.+.|+++|++++.
T Consensus 99 ~GvDvv~D~vGg----~~~~-~~~~~l~~~G~iv~~ 129 (187)
T d1vj1a2 99 GGVDVYFDNVGG----DISN-TVISQMNENSHIILC 129 (187)
T ss_dssp TCEEEEEESSCH----HHHH-HHHTTEEEEEEEEEC
T ss_pred cCceEEEecCCc----hhHH-HHhhhccccccEEEe
Confidence 569999855542 2344 677899999999874
|
| >d1id1a_ c.2.1.9 (A:) Rck domain from putative potassium channel Kch {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Potassium channel NAD-binding domain domain: Rck domain from putative potassium channel Kch species: Escherichia coli [TaxId: 562]
Probab=91.59 E-value=0.23 Score=37.46 Aligned_cols=99 Identities=6% Similarity=-0.008 Sum_probs=65.4
Q ss_pred EEEEEecCCCccHHHHHhhhC-CCcEEEEEeCChHHHHHHHHHHHcCCCeEEEEccCCCCcccc-cCCCcEeEEEEeCCC
Q 021911 146 RVLYLGAASGTTVSHVSDIVG-PNGVVYAVEFSHRSGRDLVNMAKKRTNVIPIIEDARHPAKYR-MLVGMVDVIFSDVAQ 223 (305)
Q Consensus 146 ~VLDlG~G~G~~t~~la~~~~-~~~~V~avD~s~~~~~~l~~~a~~~~nI~~~~~D~~~~~~~~-~~~~~fD~V~~d~~~ 223 (305)
+|+= ||.|.++..+++.+. ....|+.||.++......++.... .++.++.+|.+++..+. ......|.|++..+.
T Consensus 5 HiII--~G~g~~g~~l~~~L~~~~~~v~vId~d~~~~~~~~~~~~~-~~~~vi~Gd~~d~~~L~~a~i~~a~~vi~~~~~ 81 (153)
T d1id1a_ 5 HFIV--CGHSILAINTILQLNQRGQNVTVISNLPEDDIKQLEQRLG-DNADVIPGDSNDSSVLKKAGIDRCRAILALSDN 81 (153)
T ss_dssp CEEE--ECCSHHHHHHHHHHHHTTCCEEEEECCCHHHHHHHHHHHC-TTCEEEESCTTSHHHHHHHTTTTCSEEEECSSC
T ss_pred EEEE--ECCCHHHHHHHHHHHHcCCCEEEEeccchhHHHHHHHhhc-CCcEEEEccCcchHHHHHhccccCCEEEEcccc
Confidence 3444 566788888887653 235789999998554444444433 57999999998875432 234678999987776
Q ss_pred hhHHHHHHHHHhccCCCCcEEEEEE
Q 021911 224 PDQARILALNASYFLKAGGHFVISI 248 (305)
Q Consensus 224 ~~~~~~l~~~a~~~LkpGG~lv~s~ 248 (305)
......+. ...+-+.|.-+++..+
T Consensus 82 d~~n~~~~-~~~r~~~~~~~iia~~ 105 (153)
T d1id1a_ 82 DADNAFVV-LSAKDMSSDVKTVLAV 105 (153)
T ss_dssp HHHHHHHH-HHHHHHTSSSCEEEEC
T ss_pred HHHHHHHH-HHHHHhCCCCceEEEE
Confidence 65555554 4555667776666654
|
| >d1xg5a_ c.2.1.2 (A:) Putative dehydrogenase ARPG836 (MGC4172) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Putative dehydrogenase ARPG836 (MGC4172) species: Human (Homo sapiens) [TaxId: 9606]
Probab=91.53 E-value=0.36 Score=39.85 Aligned_cols=79 Identities=16% Similarity=0.118 Sum_probs=55.4
Q ss_pred CCCEEEEEecCCCccHHHHHhhh-CCCcEEEEEeCChHHHHHHHHHHHcC---CCeEEEEccCCCCccccc-------CC
Q 021911 143 PGARVLYLGAASGTTVSHVSDIV-GPNGVVYAVEFSHRSGRDLVNMAKKR---TNVIPIIEDARHPAKYRM-------LV 211 (305)
Q Consensus 143 ~g~~VLDlG~G~G~~t~~la~~~-~~~~~V~avD~s~~~~~~l~~~a~~~---~nI~~~~~D~~~~~~~~~-------~~ 211 (305)
.++.||-.|++.| ....+|+.+ ....+|+.++.++..++++.+..++. .++.++++|+.+...... ..
T Consensus 9 k~Kv~lITGas~G-IG~aiA~~la~~G~~Vv~~~r~~~~l~~~~~~l~~~~~~~~~~~~~~Dls~~~~v~~~v~~~~~~~ 87 (257)
T d1xg5a_ 9 RDRLALVTGASGG-IGAAVARALVQQGLKVVGCARTVGNIEELAAECKSAGYPGTLIPYRCDLSNEEDILSMFSAIRSQH 87 (257)
T ss_dssp TTCEEEEESTTSH-HHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCSSEEEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred CCCEEEEeCCCCH-HHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCCceEEEEEccCCCHHHHHHHHHHHHHhc
Confidence 4678999897765 555555544 23468999999998877777766554 368889999988653211 13
Q ss_pred CcEeEEEEeCC
Q 021911 212 GMVDVIFSDVA 222 (305)
Q Consensus 212 ~~fD~V~~d~~ 222 (305)
..+|+++.++.
T Consensus 88 g~iD~lVnnAg 98 (257)
T d1xg5a_ 88 SGVDICINNAG 98 (257)
T ss_dssp CCCSEEEECCC
T ss_pred CCCCEEEeccc
Confidence 57899998765
|
| >d1wmaa1 c.2.1.2 (A:2-276) Carbonyl reductase/20beta-hydroxysteroid dehydrogenase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Carbonyl reductase/20beta-hydroxysteroid dehydrogenase species: Human (Homo sapiens) [TaxId: 9606]
Probab=91.28 E-value=0.43 Score=39.57 Aligned_cols=104 Identities=17% Similarity=0.069 Sum_probs=66.2
Q ss_pred CCEE-EEEecCCCccHHHHHhhhC--CCcEEEEEeCChHHHHHHHHHHHcC-CCeEEEEccCCCCccccc-------CCC
Q 021911 144 GARV-LYLGAASGTTVSHVSDIVG--PNGVVYAVEFSHRSGRDLVNMAKKR-TNVIPIIEDARHPAKYRM-------LVG 212 (305)
Q Consensus 144 g~~V-LDlG~G~G~~t~~la~~~~--~~~~V~avD~s~~~~~~l~~~a~~~-~nI~~~~~D~~~~~~~~~-------~~~ 212 (305)
|++| |--|+.. .....+|+.+- ....|+.++.++..++++.+..+.. .++.++.+|+.+...... ...
T Consensus 2 g~rVAlVTGas~-GIG~a~A~~la~~~g~~Vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dvs~~~sv~~~~~~~~~~~g 80 (275)
T d1wmaa1 2 GIHVALVTGGNK-GIGLAIVRDLCRLFSGDVVLTARDVTRGQAAVQQLQAEGLSPRFHQLDIDDLQSIRALRDFLRKEYG 80 (275)
T ss_dssp CCCEEEESSCSS-HHHHHHHHHHHHHSSSEEEEEESSHHHHHHHHHHHHHTTCCCEEEECCTTCHHHHHHHHHHHHHHHS
T ss_pred CCeEEEECCCCC-HHHHHHHHHHHHhCCCEEEEEECCHHHHHHHHHHHHhcCCcEEEEEEecCCHHHHHHHHHHHHHhcC
Confidence 4566 4445544 45555554331 2458999999998877777776654 689999999988753211 125
Q ss_pred cEeEEEEeCCC----------hhHH-H----------HHHHHHhccCCCCcEEEEEE
Q 021911 213 MVDVIFSDVAQ----------PDQA-R----------ILALNASYFLKAGGHFVISI 248 (305)
Q Consensus 213 ~fD~V~~d~~~----------~~~~-~----------~l~~~a~~~LkpGG~lv~s~ 248 (305)
.+|+++.|+.. .++. . .+.+.+..+|++.|+++...
T Consensus 81 ~iDiLVnNAGi~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~lp~m~~~g~ivnis 137 (275)
T d1wmaa1 81 GLDVLVNNAGIAFKVADPTPFHIQAEVTMKTNFFGTRDVCTELLPLIKPQGRVVNVS 137 (275)
T ss_dssp SEEEEEECCCCCCCTTCCSCHHHHHHHHHHHHTHHHHHHHHHHGGGEEEEEEEEEEC
T ss_pred CcEEEEEcCCcCCCCCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccccc
Confidence 89999987751 0111 1 12225677889999887754
|
| >d1luaa1 c.2.1.7 (A:98-288) Methylene-tetrahydromethanopterin dehydrogenase {Methylobacterium extorquens [TaxId: 408]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Methylene-tetrahydromethanopterin dehydrogenase species: Methylobacterium extorquens [TaxId: 408]
Probab=90.89 E-value=0.084 Score=41.81 Aligned_cols=79 Identities=14% Similarity=0.126 Sum_probs=55.0
Q ss_pred CCCEEEEEecCCCccHHHHHhhh-CCCcEEEEEeCChHHHHHHHHHHHcCCCeEEEEccCCCCcccccCCCcEeEEEEeC
Q 021911 143 PGARVLYLGAASGTTVSHVSDIV-GPNGVVYAVEFSHRSGRDLVNMAKKRTNVIPIIEDARHPAKYRMLVGMVDVIFSDV 221 (305)
Q Consensus 143 ~g~~VLDlG~G~G~~t~~la~~~-~~~~~V~avD~s~~~~~~l~~~a~~~~nI~~~~~D~~~~~~~~~~~~~fD~V~~d~ 221 (305)
.+++||-.|+..| ....++..+ ....+|+.++.++...+++.+......++.+...|..+..........+|+||.+.
T Consensus 22 ~gK~vlItGasgG-IG~~ia~~la~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~iDilin~A 100 (191)
T d1luaa1 22 KGKKAVVLAGTGP-VGMRSAALLAGEGAEVVLCGRKLDKAQAAADSVNKRFKVNVTAAETADDASRAEAVKGAHFVFTAG 100 (191)
T ss_dssp TTCEEEEETTTSH-HHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHHHHHTCCCEEEECCSHHHHHHHTTTCSEEEECC
T ss_pred CCCEEEEECCCHH-HHHHHHHHHHhhccchhhcccchHHHHHHHHHHHhccchhhhhhhcccHHHHHHHhcCcCeeeecC
Confidence 5789999986555 444444432 23468999999988777777766665566677788776654433457899999876
Q ss_pred C
Q 021911 222 A 222 (305)
Q Consensus 222 ~ 222 (305)
.
T Consensus 101 g 101 (191)
T d1luaa1 101 A 101 (191)
T ss_dssp C
T ss_pred c
Confidence 5
|
| >d2c07a1 c.2.1.2 (A:54-304) beta-keto acyl carrier protein reductase {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: beta-keto acyl carrier protein reductase species: Malaria parasite (Plasmodium falciparum) [TaxId: 5833]
Probab=90.07 E-value=1.1 Score=36.66 Aligned_cols=79 Identities=13% Similarity=0.128 Sum_probs=56.9
Q ss_pred CCCEEEEEecCCCccHHHHHhhhC-CCcEEEEEeCChHHHHHHHHHHHcC-CCeEEEEccCCCCcccc-------cCCCc
Q 021911 143 PGARVLYLGAASGTTVSHVSDIVG-PNGVVYAVEFSHRSGRDLVNMAKKR-TNVIPIIEDARHPAKYR-------MLVGM 213 (305)
Q Consensus 143 ~g~~VLDlG~G~G~~t~~la~~~~-~~~~V~avD~s~~~~~~l~~~a~~~-~nI~~~~~D~~~~~~~~-------~~~~~ 213 (305)
+++.+|-.|++. .....+|..+- ...+|+.+|.++..++++.+..+.. .++.++.+|+++..... .....
T Consensus 9 enKvalITGas~-GIG~a~a~~la~~Ga~V~~~~r~~~~l~~~~~~l~~~g~~~~~~~~Dvt~~~~v~~~~~~~~~~~g~ 87 (251)
T d2c07a1 9 ENKVALVTGAGR-GIGREIAKMLAKSVSHVICISRTQKSCDSVVDEIKSFGYESSGYAGDVSKKEEISEVINKILTEHKN 87 (251)
T ss_dssp SSCEEEEESTTS-HHHHHHHHHHTTTSSEEEEEESSHHHHHHHHHHHHTTTCCEEEEECCTTCHHHHHHHHHHHHHHCSC
T ss_pred CCCEEEEeCCCC-HHHHHHHHHHHHcCCEEEEEECCHHHHHHHHHHHHhcCCcEEEEEccCCCHHHHHHHHHHHHHhcCC
Confidence 467888888665 47777777653 3458999999998777777776654 57899999998865321 12368
Q ss_pred EeEEEEeCC
Q 021911 214 VDVIFSDVA 222 (305)
Q Consensus 214 fD~V~~d~~ 222 (305)
+|+++.+..
T Consensus 88 iDilvnnag 96 (251)
T d2c07a1 88 VDILVNNAG 96 (251)
T ss_dssp CCEEEECCC
T ss_pred ceeeeeccc
Confidence 999998765
|
| >d1gu7a2 c.2.1.1 (A:161-349) 2,4-dienoyl-CoA reductase {Yeast (Candida tropicalis) [TaxId: 5482]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: 2,4-dienoyl-CoA reductase species: Yeast (Candida tropicalis) [TaxId: 5482]
Probab=89.87 E-value=0.51 Score=36.82 Aligned_cols=101 Identities=14% Similarity=0.126 Sum_probs=56.4
Q ss_pred CCCCCCEEEEEecCC---CccHHHHHhhhCCCcEEEEEeCChHHHHHHHHHHHcCCCeEEEEc---cCCCCccc-----c
Q 021911 140 WIKPGARVLYLGAAS---GTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKRTNVIPIIE---DARHPAKY-----R 208 (305)
Q Consensus 140 ~~~~g~~VLDlG~G~---G~~t~~la~~~~~~~~V~avD~s~~~~~~l~~~a~~~~nI~~~~~---D~~~~~~~-----~ 208 (305)
.++|+.+||=+.+|+ |..+..+|+.++ .+|+++--++...++..+.+++..--..+.. |....... .
T Consensus 25 ~~~~g~~vli~~ga~g~vG~~aiqlAk~~G--a~vI~~v~~~~~~~~~~~~~~~lGad~vi~~~~~~~~~~~~~v~~~~~ 102 (189)
T d1gu7a2 25 KLTPGKDWFIQNGGTSAVGKYASQIGKLLN--FNSISVIRDRPNLDEVVASLKELGATQVITEDQNNSREFGPTIKEWIK 102 (189)
T ss_dssp CCCTTTCEEEESCTTSHHHHHHHHHHHHHT--CEEEEEECCCTTHHHHHHHHHHHTCSEEEEHHHHHCGGGHHHHHHHHH
T ss_pred CCCCCCEEEEEeCCCchHHHHHHHHHhhcC--CeEEEEEecccccchHHhhhhhccccEEEeccccchhHHHHHHHHHHh
Confidence 678998888884443 457778888875 5787774333233345555544322222322 22221110 0
Q ss_pred cCCCcEeEEEEeCCChhHHHHHHHHHhccCCCCcEEEEE
Q 021911 209 MLVGMVDVIFSDVAQPDQARILALNASYFLKAGGHFVIS 247 (305)
Q Consensus 209 ~~~~~fD~V~~d~~~~~~~~~l~~~a~~~LkpGG~lv~s 247 (305)
.....+|+||-.+..+. +. .+.+.|+|+|+++..
T Consensus 103 ~~g~~vdvv~D~vg~~~----~~-~~~~~l~~~G~~v~~ 136 (189)
T d1gu7a2 103 QSGGEAKLALNCVGGKS----ST-GIARKLNNNGLMLTY 136 (189)
T ss_dssp HHTCCEEEEEESSCHHH----HH-HHHHTSCTTCEEEEC
T ss_pred hccCCceEEEECCCcch----hh-hhhhhhcCCcEEEEE
Confidence 01346999985443222 23 455799999999864
|
| >d1bg6a2 c.2.1.6 (A:4-187) N-(1-D-carboxylethyl)-L-norvaline dehydrogenase {Arthrobacter, strain 1c [TaxId: 1663]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: N-(1-D-carboxylethyl)-L-norvaline dehydrogenase species: Arthrobacter, strain 1c [TaxId: 1663]
Probab=89.87 E-value=0.24 Score=38.08 Aligned_cols=96 Identities=16% Similarity=0.161 Sum_probs=53.3
Q ss_pred CEEEEEecCCCccHHHHHhhhC-CCcEEEEEeCChHHHHHHHHHHHcC---CCeEEEEcc--CCCCcccccCCCcEeEEE
Q 021911 145 ARVLYLGAASGTTVSHVSDIVG-PNGVVYAVEFSHRSGRDLVNMAKKR---TNVIPIIED--ARHPAKYRMLVGMVDVIF 218 (305)
Q Consensus 145 ~~VLDlG~G~G~~t~~la~~~~-~~~~V~avD~s~~~~~~l~~~a~~~---~nI~~~~~D--~~~~~~~~~~~~~fD~V~ 218 (305)
++|-=+|| |.....+|..+. ....|+.+|.++..++.+.+.-... +........ ...... .....+|+|+
T Consensus 2 k~iaIiGa--G~~G~~~A~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--e~~~~aD~ii 77 (184)
T d1bg6a2 2 KTYAVLGL--GNGGHAFAAYLALKGQSVLAWDIDAQRIKEIQDRGAIIAEGPGLAGTAHPDLLTSDIG--LAVKDADVIL 77 (184)
T ss_dssp CEEEEECC--SHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHHTSEEEESSSCCEEECCSEEESCHH--HHHTTCSEEE
T ss_pred CEEEEECc--cHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHcCCCchhhhhhhhhhhhhhhhhhhH--hHhcCCCEEE
Confidence 45566666 445555554432 2248999999985544433221110 111111111 011111 1135789999
Q ss_pred EeCCChhHHHHHHHHHhccCCCCcEEE
Q 021911 219 SDVAQPDQARILALNASYFLKAGGHFV 245 (305)
Q Consensus 219 ~d~~~~~~~~~l~~~a~~~LkpGG~lv 245 (305)
+..+......++. .+..+|+++-.++
T Consensus 78 i~v~~~~~~~~~~-~i~~~l~~~~~iv 103 (184)
T d1bg6a2 78 IVVPAIHHASIAA-NIASYISEGQLII 103 (184)
T ss_dssp ECSCGGGHHHHHH-HHGGGCCTTCEEE
T ss_pred EEEchhHHHHHHH-HhhhccCCCCEEE
Confidence 9888887777777 8889999986554
|
| >d1ulua_ c.2.1.2 (A:) Enoyl-ACP reductase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Enoyl-ACP reductase species: Thermus thermophilus [TaxId: 274]
Probab=89.66 E-value=0.74 Score=37.53 Aligned_cols=80 Identities=13% Similarity=0.156 Sum_probs=52.0
Q ss_pred CCCEEEEEecCCC-ccHHHHHhhh-CCCcEEEEEeCChHHHHHHHHHHHcCCCeEEEEccCCCCccccc-------CCCc
Q 021911 143 PGARVLYLGAASG-TTVSHVSDIV-GPNGVVYAVEFSHRSGRDLVNMAKKRTNVIPIIEDARHPAKYRM-------LVGM 213 (305)
Q Consensus 143 ~g~~VLDlG~G~G-~~t~~la~~~-~~~~~V~avD~s~~~~~~l~~~a~~~~nI~~~~~D~~~~~~~~~-------~~~~ 213 (305)
.++++|-.|++++ .....+|+.+ ....+|+.++.+++......+......++.++++|+.+...... ....
T Consensus 7 ~gK~alITGas~~~GIG~aiA~~la~~Ga~V~i~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~g~ 86 (256)
T d1ulua_ 7 SGKKALVMGVTNQRSLGFAIAAKLKEAGAEVALSYQAERLRPEAEKLAEALGGALLFRADVTQDEELDALFAGVKEAFGG 86 (256)
T ss_dssp TTCEEEEESCCCSSSHHHHHHHHHHHTTCEEEEEESSGGGHHHHHHHHHHTTCCEEEECCTTCHHHHHHHHHHHHHHHSS
T ss_pred CCCEEEEECCCCCchHHHHHHHHHHHCCCEEEEEeCcHHHHHHHHHhhhccCcccccccccCCHHHHHHHHHHHHHhcCC
Confidence 4789999998653 3555555443 22458888898875555555555555678889999988653211 1257
Q ss_pred EeEEEEeCC
Q 021911 214 VDVIFSDVA 222 (305)
Q Consensus 214 fD~V~~d~~ 222 (305)
.|+++.+..
T Consensus 87 iDilVnnag 95 (256)
T d1ulua_ 87 LDYLVHAIA 95 (256)
T ss_dssp EEEEEECCC
T ss_pred ceEEEeccc
Confidence 999887654
|
| >d1tt7a2 c.2.1.1 (A:128-294) Hypothetical protein YhfP {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Hypothetical protein YhfP species: Bacillus subtilis [TaxId: 1423]
Probab=89.57 E-value=0.19 Score=38.99 Aligned_cols=98 Identities=17% Similarity=0.069 Sum_probs=57.5
Q ss_pred CCCCCEEEEEecC--CCccHHHHHhhhCCCcEEEEEeCChHHHHHHHHHHHcCCCeEEEEccCCCCcccccCCCcEeEEE
Q 021911 141 IKPGARVLYLGAA--SGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKRTNVIPIIEDARHPAKYRMLVGMVDVIF 218 (305)
Q Consensus 141 ~~~g~~VLDlG~G--~G~~t~~la~~~~~~~~V~avD~s~~~~~~l~~~a~~~~nI~~~~~D~~~~~~~~~~~~~fD~V~ 218 (305)
.+++.+||--|++ -|.++..||+.++ ++|+++.-|++..+.+.+.-. +.+ +...|.............+|+|+
T Consensus 21 ~~~~~~VLV~gaaGgVG~~avQlAk~~G--a~Viat~~s~~k~~~~~~lGa--d~v-i~~~~~~~~~~~~~~~~gvd~vi 95 (167)
T d1tt7a2 21 SPEKGSVLVTGATGGVGGIAVSMLNKRG--YDVVASTGNREAADYLKQLGA--SEV-ISREDVYDGTLKALSKQQWQGAV 95 (167)
T ss_dssp CGGGCCEEEESTTSHHHHHHHHHHHHHT--CCEEEEESSSSTHHHHHHHTC--SEE-EEHHHHCSSCCCSSCCCCEEEEE
T ss_pred CCCCCEEEEeCCcchHHHHHHHHHHHcC--CceEEEecCHHHHHHHHhhcc--cce-EeccchhchhhhcccCCCceEEE
Confidence 4456778877653 4557888888876 589999888643333332222 112 11122111111111245799988
Q ss_pred EeCCChhHHHHHHHHHhccCCCCcEEEEEE
Q 021911 219 SDVAQPDQARILALNASYFLKAGGHFVISI 248 (305)
Q Consensus 219 ~d~~~~~~~~~l~~~a~~~LkpGG~lv~s~ 248 (305)
-.+..+... ++.+.|+|+|++++.-
T Consensus 96 d~vgg~~~~-----~~~~~l~~~G~iv~~G 120 (167)
T d1tt7a2 96 DPVGGKQLA-----SLLSKIQYGGSVAVSG 120 (167)
T ss_dssp ESCCTHHHH-----HHHTTEEEEEEEEECC
T ss_pred ecCcHHHHH-----HHHHHhccCceEEEee
Confidence 776654333 5557999999998853
|
| >d1zema1 c.2.1.2 (A:3-262) Xylitol dehydrogenase {Gluconobacter oxydans [TaxId: 442]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Xylitol dehydrogenase species: Gluconobacter oxydans [TaxId: 442]
Probab=89.10 E-value=0.71 Score=37.98 Aligned_cols=79 Identities=10% Similarity=0.119 Sum_probs=54.4
Q ss_pred CCCEEEEEecCCCccHHHHHhhh-CCCcEEEEEeCChHHHHHHHHHHHcC-CCeEEEEccCCCCccccc-------CCCc
Q 021911 143 PGARVLYLGAASGTTVSHVSDIV-GPNGVVYAVEFSHRSGRDLVNMAKKR-TNVIPIIEDARHPAKYRM-------LVGM 213 (305)
Q Consensus 143 ~g~~VLDlG~G~G~~t~~la~~~-~~~~~V~avD~s~~~~~~l~~~a~~~-~nI~~~~~D~~~~~~~~~-------~~~~ 213 (305)
.++.+|-.|++.| ....+|..+ ....+|+.+|.++..++++.+..++. .++.++.+|+++...... ....
T Consensus 4 ~gK~alITGas~G-IG~aia~~la~~Ga~V~~~~r~~~~l~~~~~~~~~~g~~~~~~~~Dv~~~~~v~~~~~~~~~~~g~ 82 (260)
T d1zema1 4 NGKVCLVTGAGGN-IGLATALRLAEEGTAIALLDMNREALEKAEASVREKGVEARSYVCDVTSEEAVIGTVDSVVRDFGK 82 (260)
T ss_dssp TTCEEEEETTTSH-HHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHTTTSCEEEEECCTTCHHHHHHHHHHHHHHHSC
T ss_pred CCCEEEEeCCCCH-HHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCcEEEEEccCCCHHHHHHHHHHHHHHhCC
Confidence 4678888887665 455555443 23468999999997777777666654 578999999988653211 1257
Q ss_pred EeEEEEeCC
Q 021911 214 VDVIFSDVA 222 (305)
Q Consensus 214 fD~V~~d~~ 222 (305)
+|+++.++.
T Consensus 83 iDilVnnaG 91 (260)
T d1zema1 83 IDFLFNNAG 91 (260)
T ss_dssp CCEEEECCC
T ss_pred CCeehhhhc
Confidence 999997654
|
| >d2blla1 c.2.1.2 (A:316-657) Polymyxin resistance protein ArnA (PrmI) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Polymyxin resistance protein ArnA (PrmI) species: Escherichia coli [TaxId: 562]
Probab=88.38 E-value=0.15 Score=43.52 Aligned_cols=73 Identities=21% Similarity=0.288 Sum_probs=49.7
Q ss_pred CEEEEEecCCCccHHHHHhhh--CCCcEEEEEeCChHHHHHHHHHHHcCCCeEEEEccCCCCccc-ccCCCcEeEEEEeC
Q 021911 145 ARVLYLGAASGTTVSHVSDIV--GPNGVVYAVEFSHRSGRDLVNMAKKRTNVIPIIEDARHPAKY-RMLVGMVDVIFSDV 221 (305)
Q Consensus 145 ~~VLDlG~G~G~~t~~la~~~--~~~~~V~avD~s~~~~~~l~~~a~~~~nI~~~~~D~~~~~~~-~~~~~~fD~V~~d~ 221 (305)
++||=.|+ +|....+|++.+ ....+|+++|..... .......++++++.+|++..... ......+|+|+..+
T Consensus 1 MKILITG~-tGfiG~~l~~~Ll~~g~~~V~~ld~~~~~----~~~~~~~~~~~~i~~Di~~~~~~~~~~~~~~d~Vih~a 75 (342)
T d2blla1 1 MRVLILGV-NGFIGNHLTERLLREDHYEVYGLDIGSDA----ISRFLNHPHFHFVEGDISIHSEWIEYHVKKCDVVLPLV 75 (342)
T ss_dssp CEEEEETC-SSHHHHHHHHHHHHSTTCEEEEEESCCGG----GGGGTTCTTEEEEECCTTTCSHHHHHHHHHCSEEEECB
T ss_pred CEEEEECC-CcHHHHHHHHHHHHCCCCEEEEEeCCCcc----hhhhccCCCeEEEECccCChHHHHHHHHhCCCcccccc
Confidence 57888875 999999998765 223489999987522 22233347899999999865432 11234689998755
Q ss_pred C
Q 021911 222 A 222 (305)
Q Consensus 222 ~ 222 (305)
.
T Consensus 76 ~ 76 (342)
T d2blla1 76 A 76 (342)
T ss_dssp C
T ss_pred c
Confidence 5
|
| >d1orra_ c.2.1.2 (A:) CDP-tyvelose-2-epimerase {Salmonella typhi [TaxId: 90370]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: CDP-tyvelose-2-epimerase species: Salmonella typhi [TaxId: 90370]
Probab=88.16 E-value=0.2 Score=42.13 Aligned_cols=76 Identities=17% Similarity=0.164 Sum_probs=52.0
Q ss_pred EEEEEecCCCccHHHHHhhh-CCCcEEEEEe-CChHHHHHHHHHHHcCCCeEEEEccCCCCcccccC--CCcEeEEEEeC
Q 021911 146 RVLYLGAASGTTVSHVSDIV-GPNGVVYAVE-FSHRSGRDLVNMAKKRTNVIPIIEDARHPAKYRML--VGMVDVIFSDV 221 (305)
Q Consensus 146 ~VLDlG~G~G~~t~~la~~~-~~~~~V~avD-~s~~~~~~l~~~a~~~~nI~~~~~D~~~~~~~~~~--~~~fD~V~~d~ 221 (305)
+||=.| |+|...+||.+.+ ....+|+++| ++.....+.+.......+++++.+|+++....... ..++|+|+..+
T Consensus 2 KILVTG-atGfIGs~lv~~Ll~~g~~V~~id~~~~~~~~~~~~~~~~~~~~~~i~~Di~~~~~l~~~~~~~~~d~Vih~a 80 (338)
T d1orra_ 2 KLLITG-GCGFLGSNLASFALSQGIDLIVFDNLSRKGATDNLHWLSSLGNFEFVHGDIRNKNDVTRLITKYMPDSCFHLA 80 (338)
T ss_dssp EEEEET-TTSHHHHHHHHHHHHTTCEEEEEECCCSTTHHHHHHHHHTTCCCEEEECCTTCHHHHHHHHHHHCCSEEEECC
T ss_pred EEEEEC-CCcHHHHHHHHHHHHCcCEEEEEECCCcccchhHHHHhhccCCcEEEEcccCCHHHHHHHHHhcCCceEEeec
Confidence 677555 6799999998765 3346899998 55433345555556668999999999886543211 13579998755
Q ss_pred C
Q 021911 222 A 222 (305)
Q Consensus 222 ~ 222 (305)
+
T Consensus 81 a 81 (338)
T d1orra_ 81 G 81 (338)
T ss_dssp C
T ss_pred c
Confidence 4
|
| >d2py6a1 c.66.1.56 (A:14-408) Methyltransferase FkbM {Methylobacillus flagellatus [TaxId: 405]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: FkbM-like domain: Methyltransferase FkbM species: Methylobacillus flagellatus [TaxId: 405]
Probab=87.68 E-value=0.48 Score=41.86 Aligned_cols=51 Identities=14% Similarity=0.210 Sum_probs=40.7
Q ss_pred CCCCCCEEEEEecCCCccHHHHHhhhCC-CcEEEEEeCChHHHHHHHHHHHc
Q 021911 140 WIKPGARVLYLGAASGTTVSHVSDIVGP-NGVVYAVEFSHRSGRDLVNMAKK 190 (305)
Q Consensus 140 ~~~~g~~VLDlG~G~G~~t~~la~~~~~-~~~V~avD~s~~~~~~l~~~a~~ 190 (305)
.+.+++.++|+||-.|.++..++..... ..+|+++|.++.....+.+..+.
T Consensus 209 ~l~kn~vfIDVGAniG~~s~~f~~~~~~~~~kV~aFEP~p~n~~~LkkNi~~ 260 (395)
T d2py6a1 209 RFSDSEKMVDCGASIGESLAGLIGVTKGKFERVWMIEPDRINLQTLQNVLRR 260 (395)
T ss_dssp CCCSSCEEEEETCTTSHHHHHHHHHHTSCCSEEEEECCCHHHHHHHHHHHHH
T ss_pred CcCCCCEEEECCcCCCHHHHHHHHhcCCCCCEEEEEeCCHHHHHHHHHHHHh
Confidence 3567889999999999999888876543 35899999999887777766554
|
| >d2bgka1 c.2.1.2 (A:11-278) Rhizome secoisolariciresinol dehydrogenase {Mayapple (Podophyllum peltatum) [TaxId: 35933]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Rhizome secoisolariciresinol dehydrogenase species: Mayapple (Podophyllum peltatum) [TaxId: 35933]
Probab=87.40 E-value=0.45 Score=39.35 Aligned_cols=79 Identities=15% Similarity=0.223 Sum_probs=55.9
Q ss_pred CCCEEEEEecCCCccHHHHHhhh-CCCcEEEEEeCChHHHHHHHHHHHcCCCeEEEEccCCCCccccc-------CCCcE
Q 021911 143 PGARVLYLGAASGTTVSHVSDIV-GPNGVVYAVEFSHRSGRDLVNMAKKRTNVIPIIEDARHPAKYRM-------LVGMV 214 (305)
Q Consensus 143 ~g~~VLDlG~G~G~~t~~la~~~-~~~~~V~avD~s~~~~~~l~~~a~~~~nI~~~~~D~~~~~~~~~-------~~~~f 214 (305)
.++.+|-.|++.| ....+|..+ ....+|+.+|.++..++++.+.......+.++.+|+++...... ....+
T Consensus 5 ~gKvalITGas~G-IG~aia~~la~~Ga~V~i~~r~~~~~~~~~~~l~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~g~i 83 (268)
T d2bgka1 5 QDKVAIITGGAGG-IGETTAKLFVRYGAKVVIADIADDHGQKVCNNIGSPDVISFVHCDVTKDEDVRNLVDTTIAKHGKL 83 (268)
T ss_dssp TTCEEEEESTTSH-HHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHCCTTTEEEEECCTTCHHHHHHHHHHHHHHHSCC
T ss_pred CCCEEEEeCCCcH-HHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHhcCCCceEEEEccCCCHHHHHHHHHHHHHHcCCc
Confidence 4788999997765 555555543 23468999999997777777666655678899999988653211 12588
Q ss_pred eEEEEeCC
Q 021911 215 DVIFSDVA 222 (305)
Q Consensus 215 D~V~~d~~ 222 (305)
|+++.++.
T Consensus 84 D~lVnnAG 91 (268)
T d2bgka1 84 DIMFGNVG 91 (268)
T ss_dssp CEEEECCC
T ss_pred ceeccccc
Confidence 99998664
|
| >d2ae2a_ c.2.1.2 (A:) Tropinone reductase {Jimsonweed (Datura stramonium), II [TaxId: 4076]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Tropinone reductase species: Jimsonweed (Datura stramonium), II [TaxId: 4076]
Probab=87.33 E-value=1.6 Score=35.72 Aligned_cols=79 Identities=13% Similarity=0.227 Sum_probs=54.8
Q ss_pred CCCEEEEEecCCCccHHHHHhhhC-CCcEEEEEeCChHHHHHHHHHHHcC-CCeEEEEccCCCCcccc--------cCCC
Q 021911 143 PGARVLYLGAASGTTVSHVSDIVG-PNGVVYAVEFSHRSGRDLVNMAKKR-TNVIPIIEDARHPAKYR--------MLVG 212 (305)
Q Consensus 143 ~g~~VLDlG~G~G~~t~~la~~~~-~~~~V~avD~s~~~~~~l~~~a~~~-~nI~~~~~D~~~~~~~~--------~~~~ 212 (305)
.++++|-.|++.| ....+|..+- ...+|+.+|.++..++++.+..... .++.++++|+++..... ....
T Consensus 7 ~GK~alITGas~G-IG~aia~~la~~Ga~V~~~~r~~~~l~~~~~~~~~~g~~~~~~~~Dv~~~~~v~~~~~~~~~~~~~ 85 (259)
T d2ae2a_ 7 EGCTALVTGGSRG-IGYGIVEELASLGASVYTCSRNQKELNDCLTQWRSKGFKVEASVCDLSSRSERQELMNTVANHFHG 85 (259)
T ss_dssp TTCEEEEESCSSH-HHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCEEEEEECCTTCHHHHHHHHHHHHHHTTT
T ss_pred CCCEEEEeCCCCH-HHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCCceEEEeeCCCHHHHHHHHHHHHHHhCC
Confidence 4788998887755 5555555432 2458999999998877777766554 57888999998764321 1123
Q ss_pred cEeEEEEeCC
Q 021911 213 MVDVIFSDVA 222 (305)
Q Consensus 213 ~fD~V~~d~~ 222 (305)
.+|+++.++.
T Consensus 86 ~idilvnnAG 95 (259)
T d2ae2a_ 86 KLNILVNNAG 95 (259)
T ss_dssp CCCEEEECCC
T ss_pred CceEEEECCc
Confidence 7999998765
|
| >d2pgda2 c.2.1.6 (A:1-176) 6-phosphogluconate dehydrogenase {Sheep (Ovis orientalis aries) [TaxId: 9940]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: 6-phosphogluconate dehydrogenase species: Sheep (Ovis orientalis aries) [TaxId: 9940]
Probab=87.21 E-value=1.4 Score=33.65 Aligned_cols=116 Identities=10% Similarity=-0.024 Sum_probs=64.9
Q ss_pred CCCccHHHHHhhhC-CCcEEEEEeCChHHHHHHHHHHHcCCCeEEEEccCCCCcccccCCCcEeEEEEeCCChhHHHHHH
Q 021911 153 ASGTTVSHVSDIVG-PNGVVYAVEFSHRSGRDLVNMAKKRTNVIPIIEDARHPAKYRMLVGMVDVIFSDVAQPDQARILA 231 (305)
Q Consensus 153 G~G~~t~~la~~~~-~~~~V~avD~s~~~~~~l~~~a~~~~nI~~~~~D~~~~~~~~~~~~~fD~V~~d~~~~~~~~~l~ 231 (305)
|.|.....||..+- ....|++.|.++...+++.+...+...... ...+..+. ......|.|+...+.......+.
T Consensus 9 GlG~MG~~mA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~~~~~~-a~~~~~~~---~~~~~~~~ii~~~~~~~~v~~v~ 84 (176)
T d2pgda2 9 GLAVMGQNLILNMNDHGFVVCAFNRTVSKVDDFLANEAKGTKVLG-AHSLEEMV---SKLKKPRRIILLVKAGQAVDNFI 84 (176)
T ss_dssp CCSHHHHHHHHHHHHTTCCEEEECSSTHHHHHHHHTTTTTSSCEE-CSSHHHHH---HHBCSSCEEEECSCTTHHHHHHH
T ss_pred eEhHHHHHHHHHHHHCCCeEEEEcCCHHHHHHHHHhccccccccc-hhhhhhhh---hhhcccceEEEecCchHHHHHHH
Confidence 55778888877653 234899999999766666554333222211 11111111 12346688888777665554444
Q ss_pred HHHhccCCCCcEEEEEEcccccCCCCchhhhHHHHHHHHHHCCCcEeEE
Q 021911 232 LNASYFLKAGGHFVISIKANCIDSTVPAEAVFQSEVKKLQQDQFKPFEQ 280 (305)
Q Consensus 232 ~~a~~~LkpGG~lv~s~~~~~i~~~~~~~~v~~~~~~~l~~~Gf~~~e~ 280 (305)
..+...|+++-.++-.+ +..+... .+..+++.+.+...++.
T Consensus 85 ~~l~~~~~~g~iiid~s-------T~~~~~~-~~~~~~~~~~g~~~lda 125 (176)
T d2pgda2 85 EKLVPLLDIGDIIIDGG-------NSEYRDT-MRRCRDLKDKGILFVGS 125 (176)
T ss_dssp HHHHHHCCTTCEEEECS-------CCCHHHH-HHHHHHHHHTTCEEEEE
T ss_pred HHHHhccccCcEEEecC-------cchhHHH-HHHHHHHHhcCCceecc
Confidence 47888899875443332 2223332 23345566777777653
|
| >d1zk4a1 c.2.1.2 (A:1-251) R-specific alcohol dehydrogenase {Lactobacillus brevis [TaxId: 1580]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: R-specific alcohol dehydrogenase species: Lactobacillus brevis [TaxId: 1580]
Probab=86.53 E-value=1.1 Score=36.45 Aligned_cols=79 Identities=10% Similarity=0.122 Sum_probs=53.8
Q ss_pred CCCEEEEEecCCCccHHHHHhhh-CCCcEEEEEeCChHHHHHHHHHHHcCCCeEEEEccCCCCccccc-------CCCcE
Q 021911 143 PGARVLYLGAASGTTVSHVSDIV-GPNGVVYAVEFSHRSGRDLVNMAKKRTNVIPIIEDARHPAKYRM-------LVGMV 214 (305)
Q Consensus 143 ~g~~VLDlG~G~G~~t~~la~~~-~~~~~V~avD~s~~~~~~l~~~a~~~~nI~~~~~D~~~~~~~~~-------~~~~f 214 (305)
.++.+|-.|++.| ....+|..+ ....+|+.+|.++..++++.+......++.++.+|+++...... ..+.+
T Consensus 5 ~gK~alVTGas~G-IG~aia~~la~~Ga~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~G~i 83 (251)
T d1zk4a1 5 DGKVAIITGGTLG-IGLAIATKFVEEGAKVMITGRHSDVGEKAAKSVGTPDQIQFFQHDSSDEDGWTKLFDATEKAFGPV 83 (251)
T ss_dssp TTCEEEETTTTSH-HHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHCCTTTEEEEECCTTCHHHHHHHHHHHHHHHSSC
T ss_pred CCCEEEEeCCCCH-HHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHhCCCCcEEEEEccCCCHHHHHHHHHHHHHHhCCc
Confidence 3677888786554 555555443 23468999999987766666665544689999999988753211 12578
Q ss_pred eEEEEeCC
Q 021911 215 DVIFSDVA 222 (305)
Q Consensus 215 D~V~~d~~ 222 (305)
|+++.++.
T Consensus 84 DiLVnnAg 91 (251)
T d1zk4a1 84 STLVNNAG 91 (251)
T ss_dssp CEEEECCC
T ss_pred eEEEeccc
Confidence 99888665
|
| >d1rkxa_ c.2.1.2 (A:) CDP-glucose-4,6-dehydratase {Yersinia pseudotuberculosis [TaxId: 633]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: CDP-glucose-4,6-dehydratase species: Yersinia pseudotuberculosis [TaxId: 633]
Probab=86.33 E-value=0.32 Score=41.36 Aligned_cols=79 Identities=19% Similarity=0.165 Sum_probs=53.9
Q ss_pred CCCEEEEEecCCCccHHHHHhhh-CCCcEEEEEeCChHHHHHHHHHHHcCCCeEEEEccCCCCcccccC--CCcEeEEEE
Q 021911 143 PGARVLYLGAASGTTVSHVSDIV-GPNGVVYAVEFSHRSGRDLVNMAKKRTNVIPIIEDARHPAKYRML--VGMVDVIFS 219 (305)
Q Consensus 143 ~g~~VLDlG~G~G~~t~~la~~~-~~~~~V~avD~s~~~~~~l~~~a~~~~nI~~~~~D~~~~~~~~~~--~~~fD~V~~ 219 (305)
.+++||=.| |+|...+++++.+ .....|+++|.++.....+.+.....++++++.+|+++....... ...+|+|+.
T Consensus 7 ~~KkILVTG-~tGfIGs~lv~~Ll~~g~~V~~~~r~~~~~~~~~~~~~~~~~i~~~~~Dl~d~~~l~~~~~~~~~~~v~~ 85 (356)
T d1rkxa_ 7 QGKRVFVTG-HTGFKGGWLSLWLQTMGATVKGYSLTAPTVPSLFETARVADGMQSEIGDIRDQNKLLESIREFQPEIVFH 85 (356)
T ss_dssp TTCEEEEET-TTSHHHHHHHHHHHHTTCEEEEEESSCSSSSCHHHHTTTTTTSEEEECCTTCHHHHHHHHHHHCCSEEEE
T ss_pred CCCEEEEEC-CCCHHHHHHHHHHHHCCCEEEEEECCCCccHHHHhhhhcccCCeEEEeeccChHhhhhhhhhchhhhhhh
Confidence 468999988 5699999988765 233589999987544335555555457899999999886543111 235677776
Q ss_pred eCC
Q 021911 220 DVA 222 (305)
Q Consensus 220 d~~ 222 (305)
.++
T Consensus 86 ~aa 88 (356)
T d1rkxa_ 86 MAA 88 (356)
T ss_dssp CCS
T ss_pred hhc
Confidence 555
|
| >d1vl8a_ c.2.1.2 (A:) Gluconate 5-dehydrogenase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Gluconate 5-dehydrogenase species: Thermotoga maritima [TaxId: 2336]
Probab=85.97 E-value=1.3 Score=36.15 Aligned_cols=79 Identities=10% Similarity=0.131 Sum_probs=52.5
Q ss_pred CCCEEEEEecCCCccHHHHHhhh-CCCcEEEEEeCChHHHHHHHHHHHcC--CCeEEEEccCCCCccccc-------CCC
Q 021911 143 PGARVLYLGAASGTTVSHVSDIV-GPNGVVYAVEFSHRSGRDLVNMAKKR--TNVIPIIEDARHPAKYRM-------LVG 212 (305)
Q Consensus 143 ~g~~VLDlG~G~G~~t~~la~~~-~~~~~V~avD~s~~~~~~l~~~a~~~--~nI~~~~~D~~~~~~~~~-------~~~ 212 (305)
.++.+|-.|++.| ....+|..+ ....+|+.+|.++..+.++.+...+. .++.++.+|+++...... ...
T Consensus 4 ~gK~~lITGas~G-IG~aia~~la~~Ga~V~i~~r~~~~~~~~~~~l~~~~g~~~~~~~~Dv~~~~~v~~~~~~~~~~~g 82 (251)
T d1vl8a_ 4 RGRVALVTGGSRG-LGFGIAQGLAEAGCSVVVASRNLEEASEAAQKLTEKYGVETMAFRCDVSNYEEVKKLLEAVKEKFG 82 (251)
T ss_dssp TTCEEEEETTTSH-HHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHHHCCCEEEEECCTTCHHHHHHHHHHHHHHHS
T ss_pred CCCEEEEeCCCCH-HHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHHhCCcEEEEEccCCCHHHHHHHHHHHHHHcC
Confidence 3678888887765 455555443 23468999999987666655544332 578889999988653211 125
Q ss_pred cEeEEEEeCC
Q 021911 213 MVDVIFSDVA 222 (305)
Q Consensus 213 ~fD~V~~d~~ 222 (305)
.+|+++.++.
T Consensus 83 ~iDiLVnnAG 92 (251)
T d1vl8a_ 83 KLDTVVNAAG 92 (251)
T ss_dssp CCCEEEECCC
T ss_pred CCCEEEECCC
Confidence 7999998765
|
| >d1yb1a_ c.2.1.2 (A:) 17-beta-hydroxysteroid dehydrogenase type XI {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 17-beta-hydroxysteroid dehydrogenase type XI species: Human (Homo sapiens) [TaxId: 9606]
Probab=84.07 E-value=1.1 Score=36.56 Aligned_cols=79 Identities=14% Similarity=0.153 Sum_probs=55.7
Q ss_pred CCCEEEEEecCCCccHHHHHhhh-CCCcEEEEEeCChHHHHHHHHHHHcC-CCeEEEEccCCCCcccc-------cCCCc
Q 021911 143 PGARVLYLGAASGTTVSHVSDIV-GPNGVVYAVEFSHRSGRDLVNMAKKR-TNVIPIIEDARHPAKYR-------MLVGM 213 (305)
Q Consensus 143 ~g~~VLDlG~G~G~~t~~la~~~-~~~~~V~avD~s~~~~~~l~~~a~~~-~nI~~~~~D~~~~~~~~-------~~~~~ 213 (305)
.|..||-.|++.| ...++|..+ ....+|+.+|.++..++++.+..+.. .++.++.+|+++..... ...+.
T Consensus 6 ~Gkv~lITGas~G-IG~~ia~~la~~G~~V~l~~r~~~~l~~~~~~~~~~~~~~~~~~~Dvs~~~~v~~~~~~i~~~~g~ 84 (244)
T d1yb1a_ 6 TGEIVLITGAGHG-IGRLTAYEFAKLKSKLVLWDINKHGLEETAAKCKGLGAKVHTFVVDCSNREDIYSSAKKVKAEIGD 84 (244)
T ss_dssp TTCEEEEETTTSH-HHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHHHTCC
T ss_pred CCCEEEEeCCCcH-HHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCcEEEEEeeCCCHHHHHHHHHHHHHHcCC
Confidence 3678888887776 444444433 23468999999998777777766554 67999999999875422 12467
Q ss_pred EeEEEEeCC
Q 021911 214 VDVIFSDVA 222 (305)
Q Consensus 214 fD~V~~d~~ 222 (305)
.|+++.+..
T Consensus 85 idilinnag 93 (244)
T d1yb1a_ 85 VSILVNNAG 93 (244)
T ss_dssp CSEEEECCC
T ss_pred CceeEeecc
Confidence 999998776
|
| >d1l7da1 c.2.1.4 (A:144-326) Nicotinamide nucleotide transhydrogenase dI component {Rhodospirillum rubrum [TaxId: 1085]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: Nicotinamide nucleotide transhydrogenase dI component species: Rhodospirillum rubrum [TaxId: 1085]
Probab=83.45 E-value=0.22 Score=39.28 Aligned_cols=100 Identities=17% Similarity=0.179 Sum_probs=54.4
Q ss_pred CCEEEEEecCC-CccHHHHHhhhCCCcEEEEEeCChHHHHHHHHHHHcCCCeEEEE--------ccCCCC-------ccc
Q 021911 144 GARVLYLGAAS-GTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKRTNVIPII--------EDARHP-------AKY 207 (305)
Q Consensus 144 g~~VLDlG~G~-G~~t~~la~~~~~~~~V~avD~s~~~~~~l~~~a~~~~nI~~~~--------~D~~~~-------~~~ 207 (305)
..+||-||+|. |..+...|..++ +.|+++|+++..++++.+...+.-.+.... ..+... ...
T Consensus 29 pa~VvViGaGvaG~~Aa~~A~~lG--A~V~v~D~~~~~~~~l~~l~~~~i~~~~~~~~~~~~~~gyA~~~s~~~~~~~~~ 106 (183)
T d1l7da1 29 PARVLVFGVGVAGLQAIATAKRLG--AVVMATDVRAATKEQVESLGGKFITVDDEAMKTAETAGGYAKEMGEEFRKKQAE 106 (183)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHTT--CEEEEECSCSTTHHHHHHTTCEECCC-----------------------CCHHH
T ss_pred CcEEEEEcCcHHHHHHHHHHHHcC--CEEEEEeccHHHHHHHHHhhcceEEEeccccccccccccchhhcCHHHHHHHHH
Confidence 47999999985 456666677765 699999999866556554433221110000 001110 000
Q ss_pred --ccCCCcEeEEEEeCCChh--HHHHHHHHHhccCCCCcEEE
Q 021911 208 --RMLVGMVDVIFSDVAQPD--QARILALNASYFLKAGGHFV 245 (305)
Q Consensus 208 --~~~~~~fD~V~~d~~~~~--~~~~l~~~a~~~LkpGG~lv 245 (305)
.......|+|+..+..|. ...++..++.+.+|||..++
T Consensus 107 ~l~~~l~~aDlVI~talipG~~aP~lit~~mv~~Mk~GSVIV 148 (183)
T d1l7da1 107 AVLKELVKTDIAITTALIPGKPAPVLITEEMVTKMKPGSVII 148 (183)
T ss_dssp HHHHHHTTCSEEEECCCCTTSCCCCCSCHHHHTTSCTTCEEE
T ss_pred HHHHHHHhhhhheeeeecCCcccceeehHHHHHhcCCCcEEE
Confidence 001246899998665331 11122335668999996554
|
| >d1q7ba_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: beta-keto acyl carrier protein reductase species: Escherichia coli [TaxId: 562]
Probab=83.18 E-value=1.8 Score=35.05 Aligned_cols=77 Identities=17% Similarity=0.271 Sum_probs=51.3
Q ss_pred CCCEEEEEecCCCccHHHHHhhh-CCCcEEEEEeCChHHHHHHHHHHHcCCCeEEEEccCCCCcccc-------cCCCcE
Q 021911 143 PGARVLYLGAASGTTVSHVSDIV-GPNGVVYAVEFSHRSGRDLVNMAKKRTNVIPIIEDARHPAKYR-------MLVGMV 214 (305)
Q Consensus 143 ~g~~VLDlG~G~G~~t~~la~~~-~~~~~V~avD~s~~~~~~l~~~a~~~~nI~~~~~D~~~~~~~~-------~~~~~f 214 (305)
.++.+|-.|++.| ....+|..+ ....+|+.+|.++..++++.+... .++.++++|+++..... ......
T Consensus 3 ~gK~alITGas~G-IG~a~a~~l~~~G~~Vv~~~r~~~~l~~~~~~~~--~~~~~~~~Dv~~~~~v~~~~~~~~~~~g~i 79 (243)
T d1q7ba_ 3 EGKIALVTGASRG-IGRAIAETLAARGAKVIGTATSENGAQAISDYLG--ANGKGLMLNVTDPASIESVLEKIRAEFGEV 79 (243)
T ss_dssp TTCEEEESSCSSH-HHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHG--GGEEEEECCTTCHHHHHHHHHHHHHHTCSC
T ss_pred CCCEEEEeCCCCH-HHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHhC--CCCcEEEEEecCHHHhhhhhhhhhcccCCc
Confidence 3677887787655 555555544 234589999999876666555443 36788999998765321 113589
Q ss_pred eEEEEeCC
Q 021911 215 DVIFSDVA 222 (305)
Q Consensus 215 D~V~~d~~ 222 (305)
|+++.++.
T Consensus 80 DilVnnAg 87 (243)
T d1q7ba_ 80 DILVNNAG 87 (243)
T ss_dssp SEEEECCC
T ss_pred ceehhhhh
Confidence 99997664
|
| >d1fmca_ c.2.1.2 (A:) 7-alpha-hydroxysteroid dehydrogenase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 7-alpha-hydroxysteroid dehydrogenase species: Escherichia coli [TaxId: 562]
Probab=83.17 E-value=0.96 Score=37.06 Aligned_cols=79 Identities=11% Similarity=0.180 Sum_probs=55.4
Q ss_pred CCCEEEEEecCCCccHHHHHhhh-CCCcEEEEEeCChHHHHHHHHHHHcC-CCeEEEEccCCCCccccc-------CCCc
Q 021911 143 PGARVLYLGAASGTTVSHVSDIV-GPNGVVYAVEFSHRSGRDLVNMAKKR-TNVIPIIEDARHPAKYRM-------LVGM 213 (305)
Q Consensus 143 ~g~~VLDlG~G~G~~t~~la~~~-~~~~~V~avD~s~~~~~~l~~~a~~~-~nI~~~~~D~~~~~~~~~-------~~~~ 213 (305)
.++++|-.|++. .....+|..+ ....+|+.+|.++..++++.+..++. .++.++.+|+++...... ....
T Consensus 10 ~gK~alITGas~-GIG~aia~~la~~Ga~V~~~~r~~~~~~~~~~~l~~~g~~~~~~~~Dvs~~~~~~~~~~~~~~~~g~ 88 (255)
T d1fmca_ 10 DGKCAIITGAGA-GIGKEIAITFATAGASVVVSDINADAANHVVDEIQQLGGQAFACRCDITSEQELSALADFAISKLGK 88 (255)
T ss_dssp TTCEEEETTTTS-HHHHHHHHHHHTTTCEEEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHHHHSS
T ss_pred CCCEEEEeCCCc-HHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHcCCcEEEEEccCCCHHHHHHHHHHHHHHcCC
Confidence 467888777655 4666666554 33468999999988777777766654 578999999988653211 1258
Q ss_pred EeEEEEeCC
Q 021911 214 VDVIFSDVA 222 (305)
Q Consensus 214 fD~V~~d~~ 222 (305)
+|+++.++.
T Consensus 89 iDilvnnAG 97 (255)
T d1fmca_ 89 VDILVNNAG 97 (255)
T ss_dssp CCEEEECCC
T ss_pred CCEeeeCCc
Confidence 999988664
|
| >d1ae1a_ c.2.1.2 (A:) Tropinone reductase {Jimsonweed (Datura stramonium), I [TaxId: 4076]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Tropinone reductase species: Jimsonweed (Datura stramonium), I [TaxId: 4076]
Probab=82.93 E-value=1.7 Score=35.57 Aligned_cols=79 Identities=14% Similarity=0.257 Sum_probs=54.8
Q ss_pred CCCEEEEEecCCCccHHHHHhhh-CCCcEEEEEeCChHHHHHHHHHHHcC-CCeEEEEccCCCCcccc--------cCCC
Q 021911 143 PGARVLYLGAASGTTVSHVSDIV-GPNGVVYAVEFSHRSGRDLVNMAKKR-TNVIPIIEDARHPAKYR--------MLVG 212 (305)
Q Consensus 143 ~g~~VLDlG~G~G~~t~~la~~~-~~~~~V~avD~s~~~~~~l~~~a~~~-~nI~~~~~D~~~~~~~~--------~~~~ 212 (305)
.+++||-.|+..| ....+|+.+ ....+|+.++.++..++++.+..... .+++++.+|+.+..... ....
T Consensus 5 ~gK~alITGas~G-IG~aia~~la~~G~~V~i~~r~~~~l~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~~g 83 (258)
T d1ae1a_ 5 KGTTALVTGGSKG-IGYAIVEELAGLGARVYTCSRNEKELDECLEIWREKGLNVEGSVCDLLSRTERDKLMQTVAHVFDG 83 (258)
T ss_dssp TTCEEEEESCSSH-HHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHHHTTS
T ss_pred CCCEEEEeCCCCH-HHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCCceEEEeecCCHHHHHHHHHHHHHHhCC
Confidence 5788999998654 555555443 23468999999997777777666655 67888999998875321 1225
Q ss_pred cEeEEEEeCC
Q 021911 213 MVDVIFSDVA 222 (305)
Q Consensus 213 ~fD~V~~d~~ 222 (305)
..|+++.++.
T Consensus 84 ~idilinnag 93 (258)
T d1ae1a_ 84 KLNILVNNAG 93 (258)
T ss_dssp CCCEEEECCC
T ss_pred CcEEEecccc
Confidence 7888887665
|
| >d1qsga_ c.2.1.2 (A:) Enoyl-ACP reductase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Enoyl-ACP reductase species: Escherichia coli [TaxId: 562]
Probab=82.87 E-value=3.6 Score=32.91 Aligned_cols=80 Identities=14% Similarity=0.108 Sum_probs=49.8
Q ss_pred CCCEEEEEecCCC-ccHHHHHhhh-CCCcEEEEEeCChHHHHHHHHHHHcCCCeEEEEccCCCCccc-------ccCCCc
Q 021911 143 PGARVLYLGAASG-TTVSHVSDIV-GPNGVVYAVEFSHRSGRDLVNMAKKRTNVIPIIEDARHPAKY-------RMLVGM 213 (305)
Q Consensus 143 ~g~~VLDlG~G~G-~~t~~la~~~-~~~~~V~avD~s~~~~~~l~~~a~~~~nI~~~~~D~~~~~~~-------~~~~~~ 213 (305)
.+++||-.|++++ .....+|+.+ ....+|+.++.+++....+.+......+...++.|..+.... ......
T Consensus 4 ~gK~~lITGass~~GIG~aiA~~l~~~G~~V~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (258)
T d1qsga_ 4 SGKRILVTGVASKLSIAYGIAQAMHREGAELAFTYQNDKLKGRVEEFAAQLGSDIVLQCDVAEDASIDTMFAELGKVWPK 83 (258)
T ss_dssp TTCEEEECCCCSTTSHHHHHHHHHHHTTCEEEEEESSTTTHHHHHHHHHHTTCCCEEECCTTCHHHHHHHHHHHHTTCSS
T ss_pred CCCEEEEECCCCchhHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHhhcCCcceeecccchHHHHHHHHHHhhhcccc
Confidence 4788999988773 3444444333 234689999998765555555555555677777777654321 112468
Q ss_pred EeEEEEeCC
Q 021911 214 VDVIFSDVA 222 (305)
Q Consensus 214 fD~V~~d~~ 222 (305)
.|.++.++.
T Consensus 84 ~d~~v~~a~ 92 (258)
T d1qsga_ 84 FDGFVHSIG 92 (258)
T ss_dssp EEEEEECCC
T ss_pred cceEEEeec
Confidence 898887654
|
| >d1vpda2 c.2.1.6 (A:3-163) Hydroxyisobutyrate dehydrogenase {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Hydroxyisobutyrate dehydrogenase species: Salmonella typhimurium [TaxId: 90371]
Probab=82.63 E-value=0.89 Score=34.35 Aligned_cols=107 Identities=13% Similarity=0.112 Sum_probs=59.8
Q ss_pred CCCccHHHHHhhh-CCCcEEEEEeCChHHHHHHHHHHHcCCCeEEEEccCCCCcccccCCCcEeEEEEeCCChhHHHHHH
Q 021911 153 ASGTTVSHVSDIV-GPNGVVYAVEFSHRSGRDLVNMAKKRTNVIPIIEDARHPAKYRMLVGMVDVIFSDVAQPDQARILA 231 (305)
Q Consensus 153 G~G~~t~~la~~~-~~~~~V~avD~s~~~~~~l~~~a~~~~nI~~~~~D~~~~~~~~~~~~~fD~V~~d~~~~~~~~~l~ 231 (305)
|.|.....+|..+ .....|++.|.++...+. +.+. ... ...+ +.+ .....|+|++.+|.+.+.+.+.
T Consensus 7 GlG~MG~~~A~~L~~~G~~V~~~d~~~~~~~~----~~~~-~~~-~~~~---~~e---~~~~~d~ii~~v~~~~~v~~v~ 74 (161)
T d1vpda2 7 GLGIMGKPMSKNLLKAGYSLVVSDRNPEAIAD----VIAA-GAE-TAST---AKA---IAEQCDVIITMLPNSPHVKEVA 74 (161)
T ss_dssp CCSTTHHHHHHHHHHTTCEEEEECSCHHHHHH----HHHT-TCE-ECSS---HHH---HHHHCSEEEECCSSHHHHHHHH
T ss_pred ehhHHHHHHHHHHHHCCCeEEEEeCCcchhHH----HHHh-hhh-hccc---HHH---HHhCCCeEEEEcCCHHHHHHHH
Confidence 4577788777654 223489999999844333 3332 222 1111 111 1357899999999887776554
Q ss_pred H---HHhccCCCCcEEEEEEcccccCCCCchhhhHHHHHHHHHHCCCcEeE
Q 021911 232 L---NASYFLKAGGHFVISIKANCIDSTVPAEAVFQSEVKKLQQDQFKPFE 279 (305)
Q Consensus 232 ~---~a~~~LkpGG~lv~s~~~~~i~~~~~~~~v~~~~~~~l~~~Gf~~~e 279 (305)
. .+...++++ .+++.. ++..+... .+..+.+++.+...++
T Consensus 75 ~~~~~~~~~~~~g-~iiid~------sT~~p~~~-~~~~~~~~~~g~~~vd 117 (161)
T d1vpda2 75 LGENGIIEGAKPG-TVLIDM------SSIAPLAS-REISDALKAKGVEMLD 117 (161)
T ss_dssp HSTTCHHHHCCTT-CEEEEC------SCCCHHHH-HHHHHHHHTTTCEEEE
T ss_pred hCCcchhhccCCC-CEEEEC------CCCCHHHH-HHHHHHHHHcCCceec
Confidence 1 255677887 444432 12223222 2334556666766655
|
| >d1snya_ c.2.1.2 (A:) Carbonyl reductase sniffer {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Carbonyl reductase sniffer species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Probab=82.54 E-value=0.8 Score=37.18 Aligned_cols=77 Identities=17% Similarity=0.268 Sum_probs=53.5
Q ss_pred CEEEEEecCCCccHHHHHhhh----CCCcEEEEEeCChHHHHHHHHHHHcCCCeEEEEccCCCCccccc---------CC
Q 021911 145 ARVLYLGAASGTTVSHVSDIV----GPNGVVYAVEFSHRSGRDLVNMAKKRTNVIPIIEDARHPAKYRM---------LV 211 (305)
Q Consensus 145 ~~VLDlG~G~G~~t~~la~~~----~~~~~V~avD~s~~~~~~l~~~a~~~~nI~~~~~D~~~~~~~~~---------~~ 211 (305)
++||-.|+..| ....+|+.+ ....+|+.++.++..++++.+..+...++.++.+|+++...... ..
T Consensus 3 KtilITGas~G-IG~a~a~~l~~~a~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~Dvs~~~~v~~~~~~i~~~~~~ 81 (248)
T d1snya_ 3 NSILITGCNRG-LGLGLVKALLNLPQPPQHLFTTCRNREQAKELEDLAKNHSNIHILEIDLRNFDAYDKLVADIEGVTKD 81 (248)
T ss_dssp SEEEESCCSSH-HHHHHHHHHHTSSSCCSEEEEEESCTTSCHHHHHHHHHCTTEEEEECCTTCGGGHHHHHHHHHHHHGG
T ss_pred CEEEEeCCCCH-HHHHHHHHHHHHHhCCCEEEEEECCHHHHHHHHHHHhcCCcEEEEEEEeccHHHHHHHHhhhHHHhhc
Confidence 46887776665 666666543 23458999998876666666666666899999999988753210 13
Q ss_pred CcEeEEEEeCC
Q 021911 212 GMVDVIFSDVA 222 (305)
Q Consensus 212 ~~fD~V~~d~~ 222 (305)
..+|+++.++.
T Consensus 82 ~~iDiLvnNAg 92 (248)
T d1snya_ 82 QGLNVLFNNAG 92 (248)
T ss_dssp GCCSEEEECCC
T ss_pred CCcceEEeecc
Confidence 57899998764
|
| >d1g0oa_ c.2.1.2 (A:) 1,3,8-trihydroxynaphtalene reductase (THNR, naphtol reductase) {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 1,3,8-trihydroxynaphtalene reductase (THNR, naphtol reductase) species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]
Probab=82.19 E-value=2.4 Score=34.65 Aligned_cols=78 Identities=18% Similarity=0.218 Sum_probs=50.0
Q ss_pred CCEEEEEecCCCccHHHHHhhhC-CCcEEEEEeCC-hHHHHHHHHHHHcC-CCeEEEEccCCCCcccc-------cCCCc
Q 021911 144 GARVLYLGAASGTTVSHVSDIVG-PNGVVYAVEFS-HRSGRDLVNMAKKR-TNVIPIIEDARHPAKYR-------MLVGM 213 (305)
Q Consensus 144 g~~VLDlG~G~G~~t~~la~~~~-~~~~V~avD~s-~~~~~~l~~~a~~~-~nI~~~~~D~~~~~~~~-------~~~~~ 213 (305)
+++||-.|+..| ....+|+.+- ...+|+.+|.+ ++.++++.+..++. .++.++++|+.+..... ...+.
T Consensus 18 gK~~lITGas~G-IG~aia~~la~~Ga~Vvi~~~~~~~~~~~~~~~~~~~g~~~~~~~~D~~~~~~v~~~~~~~~~~~g~ 96 (272)
T d1g0oa_ 18 GKVALVTGAGRG-IGREMAMELGRRGCKVIVNYANSTESAEEVVAAIKKNGSDAACVKANVGVVEDIVRMFEEAVKIFGK 96 (272)
T ss_dssp TCEEEETTTTSH-HHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHHHHSC
T ss_pred CCEEEEeCCCCH-HHHHHHHHHHHcCCEEEEEeCCchHHHHHHHHHHHhhCCceeeEeCCCCCHHHHHHHHHHHHHHhCC
Confidence 678888887665 4555554432 23589888887 44444555554444 67999999998864321 11257
Q ss_pred EeEEEEeCC
Q 021911 214 VDVIFSDVA 222 (305)
Q Consensus 214 fD~V~~d~~ 222 (305)
.|+++.+..
T Consensus 97 idilV~nag 105 (272)
T d1g0oa_ 97 LDIVCSNSG 105 (272)
T ss_dssp CCEEEECCC
T ss_pred CCccccccc
Confidence 899988665
|
| >d1hxha_ c.2.1.2 (A:) 3beta/17beta hydroxysteroid dehydrogenase {Comamonas testosteroni [TaxId: 285]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 3beta/17beta hydroxysteroid dehydrogenase species: Comamonas testosteroni [TaxId: 285]
Probab=81.95 E-value=1.8 Score=35.26 Aligned_cols=77 Identities=19% Similarity=0.330 Sum_probs=50.9
Q ss_pred CCCEEEEEecCCCccHHHHHhhh-CCCcEEEEEeCChHHHHHHHHHHHcCCCeEEEEccCCCCccccc-------CCCcE
Q 021911 143 PGARVLYLGAASGTTVSHVSDIV-GPNGVVYAVEFSHRSGRDLVNMAKKRTNVIPIIEDARHPAKYRM-------LVGMV 214 (305)
Q Consensus 143 ~g~~VLDlG~G~G~~t~~la~~~-~~~~~V~avD~s~~~~~~l~~~a~~~~nI~~~~~D~~~~~~~~~-------~~~~f 214 (305)
.++.+|-.|++.| ....+|..+ ....+|+.+|.++..++++.+... .+..++.+|+++...... ....+
T Consensus 5 ~gK~alITGas~G-IG~aia~~la~~Ga~V~~~~~~~~~~~~~~~~~~--~~~~~~~~Dv~~~~~~~~~~~~~~~~~g~i 81 (253)
T d1hxha_ 5 QGKVALVTGGASG-VGLEVVKLLLGEGAKVAFSDINEAAGQQLAAELG--ERSMFVRHDVSSEADWTLVMAAVQRRLGTL 81 (253)
T ss_dssp TTCEEEETTTTSH-HHHHHHHHHHHTTCEEEEECSCHHHHHHHHHHHC--TTEEEECCCTTCHHHHHHHHHHHHHHHCSC
T ss_pred CCCEEEEeCCCCH-HHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHhC--CCeEEEEeecCCHHHHHHHHHHHHHHhCCC
Confidence 4678887786655 555555543 234589999999866665554442 467888899987643211 12578
Q ss_pred eEEEEeCC
Q 021911 215 DVIFSDVA 222 (305)
Q Consensus 215 D~V~~d~~ 222 (305)
|+++.++.
T Consensus 82 DilVnnAG 89 (253)
T d1hxha_ 82 NVLVNNAG 89 (253)
T ss_dssp CEEEECCC
T ss_pred CeEEeccc
Confidence 99998775
|
| >d2rhca1 c.2.1.2 (A:5-261) beta-keto acyl carrier protein reductase {Streptomyces coelicolor [TaxId: 1902]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: beta-keto acyl carrier protein reductase species: Streptomyces coelicolor [TaxId: 1902]
Probab=81.37 E-value=1.7 Score=35.29 Aligned_cols=78 Identities=17% Similarity=0.147 Sum_probs=53.5
Q ss_pred CCEEEEEecCCCccHHHHHhhh-CCCcEEEEEeCChHHHHHHHHHHHcC-CCeEEEEccCCCCccccc-------CCCcE
Q 021911 144 GARVLYLGAASGTTVSHVSDIV-GPNGVVYAVEFSHRSGRDLVNMAKKR-TNVIPIIEDARHPAKYRM-------LVGMV 214 (305)
Q Consensus 144 g~~VLDlG~G~G~~t~~la~~~-~~~~~V~avD~s~~~~~~l~~~a~~~-~nI~~~~~D~~~~~~~~~-------~~~~f 214 (305)
++.+|-.|++.| ....+|..+ ....+|+.+|.++..++++.+..++. .++.++.+|+++...... ....+
T Consensus 2 gKValITGas~G-IG~aia~~la~~Ga~V~i~~r~~~~l~~~~~~l~~~g~~~~~~~~Dvs~~~~v~~~~~~~~~~~g~i 80 (257)
T d2rhca1 2 SEVALVTGATSG-IGLEIARRLGKEGLRVFVCARGEEGLRTTLKELREAGVEADGRTCDVRSVPEIEALVAAVVERYGPV 80 (257)
T ss_dssp CCEEEEESCSSH-HHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHHHTCSC
T ss_pred CCEEEEeCCCCH-HHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCcEEEEEeecCCHHHHHHHHHHHHHHhCCC
Confidence 456677776654 556666544 23468999999987777776666554 578999999988753221 13689
Q ss_pred eEEEEeCC
Q 021911 215 DVIFSDVA 222 (305)
Q Consensus 215 D~V~~d~~ 222 (305)
|+++.++.
T Consensus 81 DilVnnAG 88 (257)
T d2rhca1 81 DVLVNNAG 88 (257)
T ss_dssp SEEEECCC
T ss_pred CEEEeccc
Confidence 99998765
|
| >d2a4ka1 c.2.1.2 (A:2-242) beta-keto acyl carrier protein reductase {Thermus thermophilus, TTHB020 [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: beta-keto acyl carrier protein reductase species: Thermus thermophilus, TTHB020 [TaxId: 274]
Probab=80.61 E-value=1.7 Score=35.05 Aligned_cols=77 Identities=21% Similarity=0.253 Sum_probs=50.4
Q ss_pred CCCEEEEEecCCCccHHHHHhhh-CCCcEEEEEeCChHHHHHHHHHHHcCCCeEEEEccCCCCccccc-------CCCcE
Q 021911 143 PGARVLYLGAASGTTVSHVSDIV-GPNGVVYAVEFSHRSGRDLVNMAKKRTNVIPIIEDARHPAKYRM-------LVGMV 214 (305)
Q Consensus 143 ~g~~VLDlG~G~G~~t~~la~~~-~~~~~V~avD~s~~~~~~l~~~a~~~~nI~~~~~D~~~~~~~~~-------~~~~f 214 (305)
.++++|-.|++.| ....+|+.+ ....+|+.++.+.+.+.++++.. ..++.++++|+++...... ....+
T Consensus 4 ~gK~alItGas~G-IG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~--~~~~~~~~~Dls~~~~i~~~~~~i~~~~g~i 80 (241)
T d2a4ka1 4 SGKTILVTGAASG-IGRAALDLFAREGASLVAVDREERLLAEAVAAL--EAEAIAVVADVSDPKAVEAVFAEALEEFGRL 80 (241)
T ss_dssp TTCEEEEESTTSH-HHHHHHHHHHHTTCEEEEEESCHHHHHHHHHTC--CSSEEEEECCTTSHHHHHHHHHHHHHHHSCC
T ss_pred CCCEEEEeCCCCH-HHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHc--CCceEEEEecCCCHHHHHHHHHHHHHHhCCc
Confidence 4678888887754 555555544 34568999999985444333322 2578899999987653211 12579
Q ss_pred eEEEEeCC
Q 021911 215 DVIFSDVA 222 (305)
Q Consensus 215 D~V~~d~~ 222 (305)
|+++.+..
T Consensus 81 DiLinnAg 88 (241)
T d2a4ka1 81 HGVAHFAG 88 (241)
T ss_dssp CEEEEGGG
T ss_pred cEeccccc
Confidence 99998665
|
| >d1y1pa1 c.2.1.2 (A:2-343) Aldehyde reductase II {Sporobolomyces salmonicolor [TaxId: 5005]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Aldehyde reductase II species: Sporobolomyces salmonicolor [TaxId: 5005]
Probab=80.37 E-value=2 Score=36.12 Aligned_cols=83 Identities=18% Similarity=0.124 Sum_probs=53.6
Q ss_pred cCCCCCCEEEEEecCCCccHHHHHhhh-CCCcEEEEEeCChHHHHHHHHHHH---cCCCeEEEEccCCCCcccccCCCcE
Q 021911 139 IWIKPGARVLYLGAASGTTVSHVSDIV-GPNGVVYAVEFSHRSGRDLVNMAK---KRTNVIPIIEDARHPAKYRMLVGMV 214 (305)
Q Consensus 139 ~~~~~g~~VLDlG~G~G~~t~~la~~~-~~~~~V~avD~s~~~~~~l~~~a~---~~~nI~~~~~D~~~~~~~~~~~~~f 214 (305)
.-++++++||=.|+ +|...++|++.+ .....|+++.-+......+.+... ......++..|+.+..........+
T Consensus 6 ~~~~~gk~VlVTG~-sGfIGs~l~~~Ll~~G~~V~~~vR~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~ 84 (342)
T d1y1pa1 6 AVLPEGSLVLVTGA-NGFVASHVVEQLLEHGYKVRGTARSASKLANLQKRWDAKYPGRFETAVVEDMLKQGAYDEVIKGA 84 (342)
T ss_dssp CSSCTTCEEEEETT-TSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHHHHSTTTEEEEECSCTTSTTTTTTTTTTC
T ss_pred CCCCCcCEEEEECC-CCHHHHHHHHHHHHCcCEEEEEeCCchhHHHHHHhhhccccccccEEEeccccchhhhhhhcccc
Confidence 35678999999985 599999998754 233589988766544333332211 1134556778988776544445678
Q ss_pred eEEEEeCC
Q 021911 215 DVIFSDVA 222 (305)
Q Consensus 215 D~V~~d~~ 222 (305)
|.|+....
T Consensus 85 ~~v~~~a~ 92 (342)
T d1y1pa1 85 AGVAHIAS 92 (342)
T ss_dssp SEEEECCC
T ss_pred hhhhhhcc
Confidence 88886554
|
| >d2gdza1 c.2.1.2 (A:3-256) 15-hydroxyprostaglandin dehydrogenase, PGDH {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 15-hydroxyprostaglandin dehydrogenase, PGDH species: Human (Homo sapiens) [TaxId: 9606]
Probab=80.26 E-value=1.1 Score=36.43 Aligned_cols=79 Identities=18% Similarity=0.241 Sum_probs=54.5
Q ss_pred CCCEEEEEecCCCccHHHHHhhh-CCCcEEEEEeCChHHHHHHHHHHHcC---CCeEEEEccCCCCccccc-------CC
Q 021911 143 PGARVLYLGAASGTTVSHVSDIV-GPNGVVYAVEFSHRSGRDLVNMAKKR---TNVIPIIEDARHPAKYRM-------LV 211 (305)
Q Consensus 143 ~g~~VLDlG~G~G~~t~~la~~~-~~~~~V~avD~s~~~~~~l~~~a~~~---~nI~~~~~D~~~~~~~~~-------~~ 211 (305)
.|+.+|-.|++.| ....+|..+ ....+|+.+|.++..+.++.+...+. .++.++++|+++...... ..
T Consensus 2 ~GKvalITGas~G-IG~aia~~la~~Ga~V~i~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~ 80 (254)
T d2gdza1 2 NGKVALVTGAAQG-IGRAFAEALLLKGAKVALVDWNLEAGVQCKAALHEQFEPQKTLFIQCDVADQQQLRDTFRKVVDHF 80 (254)
T ss_dssp TTCEEEEETTTSH-HHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHTTTSCGGGEEEEECCTTSHHHHHHHHHHHHHHH
T ss_pred CCCEEEEeCCCCH-HHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHhcCCCcEEEEEeecCCHHHHHHHHHHHHHHc
Confidence 3678888887655 566666544 23468999999987777766665443 468899999988653211 12
Q ss_pred CcEeEEEEeCC
Q 021911 212 GMVDVIFSDVA 222 (305)
Q Consensus 212 ~~fD~V~~d~~ 222 (305)
+.+|+++.++.
T Consensus 81 G~iDilVnnAg 91 (254)
T d2gdza1 81 GRLDILVNNAG 91 (254)
T ss_dssp SCCCEEEECCC
T ss_pred CCcCeeccccc
Confidence 57999998776
|
| >d1udca_ c.2.1.2 (A:) Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) species: Escherichia coli [TaxId: 562]
Probab=80.23 E-value=0.33 Score=41.32 Aligned_cols=77 Identities=19% Similarity=0.140 Sum_probs=48.4
Q ss_pred CEEEEEecCCCccHHHHHhhh-CCCcEEEEEeCChHHHHHHHHHH--HcCCCeEEEEccCCCCcccccC--CCcEeEEEE
Q 021911 145 ARVLYLGAASGTTVSHVSDIV-GPNGVVYAVEFSHRSGRDLVNMA--KKRTNVIPIIEDARHPAKYRML--VGMVDVIFS 219 (305)
Q Consensus 145 ~~VLDlG~G~G~~t~~la~~~-~~~~~V~avD~s~~~~~~l~~~a--~~~~nI~~~~~D~~~~~~~~~~--~~~fD~V~~ 219 (305)
|+||-.| |+|...++|++.+ ...-.|+++|......+...... ....++.++++|+++....... ...+|+|+.
T Consensus 1 MKiLItG-~tGfIG~~l~~~L~~~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~l~~~~~~~~~d~ViH 79 (338)
T d1udca_ 1 MRVLVTG-GSGYIGSHTCVQLLQNGHDVIILDNLCNSKRSVLPVIERLGGKHPTFVEGDIRNEALMTEILHDHAIDTVIH 79 (338)
T ss_dssp CEEEEET-TTSHHHHHHHHHHHHTTCEEEEEECCSSCCTTHHHHHHHHHTSCCEEEECCTTCHHHHHHHHHHTTCSEEEE
T ss_pred CEEEEEC-CCCHHHHHHHHHHHHCcCEEEEEECCCCcchhhHHHHHhhcCCCCEEEEeecCCHHHHHHHHhccCCCEEEE
Confidence 5677777 7899999998765 23358999985211111222221 1226899999999887643221 236899986
Q ss_pred eCC
Q 021911 220 DVA 222 (305)
Q Consensus 220 d~~ 222 (305)
-++
T Consensus 80 lAa 82 (338)
T d1udca_ 80 FAG 82 (338)
T ss_dssp CCS
T ss_pred CCC
Confidence 554
|
| >d1ja9a_ c.2.1.2 (A:) 1,3,6,8-tetrahydroxynaphthalene reductase {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 1,3,6,8-tetrahydroxynaphthalene reductase species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]
Probab=80.22 E-value=2.1 Score=34.72 Aligned_cols=79 Identities=20% Similarity=0.229 Sum_probs=50.3
Q ss_pred CCCEEEEEecCCCccHHHHHhhhC-CCcEEEEE-eCChHHHHHHHHHHHcC-CCeEEEEccCCCCcccc-------cCCC
Q 021911 143 PGARVLYLGAASGTTVSHVSDIVG-PNGVVYAV-EFSHRSGRDLVNMAKKR-TNVIPIIEDARHPAKYR-------MLVG 212 (305)
Q Consensus 143 ~g~~VLDlG~G~G~~t~~la~~~~-~~~~V~av-D~s~~~~~~l~~~a~~~-~nI~~~~~D~~~~~~~~-------~~~~ 212 (305)
.|+.||-.|+ ++....++|..+- ...+|+.+ ..++...+.+.+...+. .++.++.+|+++..... ....
T Consensus 5 ~GK~alITGa-s~GIG~aia~~la~~G~~Vvi~~~~~~~~~~~~~~~~~~~g~~~~~~~~D~~~~~~v~~~~~~~~~~~g 83 (259)
T d1ja9a_ 5 AGKVALTTGA-GRGIGRGIAIELGRRGASVVVNYGSSSKAAEEVVAELKKLGAQGVAIQADISKPSEVVALFDKAVSHFG 83 (259)
T ss_dssp TTCEEEETTT-TSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHHTTCCEEEEECCTTSHHHHHHHHHHHHHHHS
T ss_pred CCCEEEEeCC-CCHHHHHHHHHHHHcCCEEEEEcCCChHHHHHHHHHHHHcCCCceEecCCCCCHHHHHHHHHHHHHHcC
Confidence 4788887775 4556666665542 23467765 45555455555555544 58999999998764321 1235
Q ss_pred cEeEEEEeCC
Q 021911 213 MVDVIFSDVA 222 (305)
Q Consensus 213 ~fD~V~~d~~ 222 (305)
..|+++.++.
T Consensus 84 ~idilinnag 93 (259)
T d1ja9a_ 84 GLDFVMSNSG 93 (259)
T ss_dssp CEEEEECCCC
T ss_pred CCcEEEeccc
Confidence 7999998665
|