Citrus Sinensis ID: 021923

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-----
MLETKKAALQDSSKFKALARQARNESLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAMLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIAICQALLMVGPECARYCGIEALEPLGIFLPGDINYPGGALFDPLNLSKDPVAFEELKVKEIKNGRLAMVAWLGFYIQAAFTGKGPVQNLLDHISDPLHNNLLSMVKSMDDPSGCPLERMRRCQFRCNQTRRSLVLSMLTITPKKKIIFGNNCFIYSTVRSMRL
ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHccHHHHHHHHcccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHccccccHHHHHHHHccccccccccccccccccccccccHHHHHHHEEcccccEEEEcccEEEEEEEccccc
cccccccccHHHHcccccccccccccccccccccccccccccccccHcccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccEEEccccHHcccccccccccccHHHccHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHcccccHHHHHHHHccccccccHHHHHHHccccccccHHHHHHHHEEEccccEEEEcccEEEEEEEEEccc
MLETKKAALQDSSKFKALARQARNESlwygeerprwlgpipydypsyltgelpgdygfdvaglskdpmafQKYFNFEILHARWAMLGALGALVPEVLDMVGAFhlvepvwwrvgysklqgetldylgipglhlagsQGVIVIAICQALLMVgpecarycgiealeplgiflpgdinypggalfdplnlskdpvaFEELKVKEIKNGRLAMVAWLGFYIQAAftgkgpvqnlldhisdplhNNLLSMVksmddpsgcplermrrcqfrCNQTRRSLVLSMLtitpkkkiifgnnCFIYSTVRSMRL
mletkkaalqdsskfkALARQARNeslwygeerprwlGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAMLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIAICQALLMVGPECARYCGIEALEPLGIFLPGDINYPGGALFDPLNLSKDPVAFEELKVKEIKNGRLAMVAWLGFYIQAAFTGKGPVQNLLDHISDPLHNNLLSMVKSMDDPSGCPLERMRRCQFRCNQTRRSLVLSMltitpkkkiifgnncFIYSTVRSMRL
MLETKKAALQDSSKFKALARQARNESLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAMLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIAICQALLMVGPECARYCGIEALEPLGIFLPGDINYPGGALFDPLNLSKDPVAFEELKVKEIKNGRLAMVAWLGFYIQAAFTGKGPVQNLLDHISDPLHNNLLSMVKSMDDPSGCPLERMRRCQFRCNQTRRSLVLSMLTITPKKKIIFGNNCFIYSTVRSMRL
*************************SLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAMLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIAICQALLMVGPECARYCGIEALEPLGIFLPGDINYPGGALFDPLNLSKDPVAFEELKVKEIKNGRLAMVAWLGFYIQAAFTGKGPVQNLLDHISDPLHNNLLSMV********CPLERMRRCQFRCNQTRRSLVLSMLTITPKKKIIFGNNCFIYSTV*****
***********************************WLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAMLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIAICQALLMVGPECARYCGIEALEPLGIFLPGDINYPGGALFDPLNLSKDPVAFEELKVKEIKNGRLAMVAWLGFYIQAAFTGKGPVQNLLDHISDPLHNNLLSMVKSMDDPSGCPLERMRRCQF*CNQTRRSLVLSMLTITPKKKIIFGNNCFIYSTVRSMR*
MLETKKAALQDSSKFKALARQARNESLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAMLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIAICQALLMVGPECARYCGIEALEPLGIFLPGDINYPGGALFDPLNLSKDPVAFEELKVKEIKNGRLAMVAWLGFYIQAAFTGKGPVQNLLDHISDPLHNNLLSMVKSMDDPSGCPLERMRRCQFRCNQTRRSLVLSMLTITPKKKIIFGNNCFIYSTVRSMRL
**************************LWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAMLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIAICQALLMVGPECARYCGIEALEPLGIFLPGDINYPGGALFDPLNLSKDPVAFEELKVKEIKNGRLAMVAWLGFYIQAAFTGKGPVQNLLDHISDPLHNNLLSMVKSMDDPSGCPLERMRRCQFRCNQTRRSLVLSMLTITPKKKIIFGNNCFIYSTVRSMRL
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MLETKKAALQDSSKFKALARQARNESLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAMLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIAICQALLMVGPECARYCGIEALEPLGIFLPGDINYPGGALFDPLNLSKDPVAFEELKVKEIKNGRLAMVAWLGFYIQAAFTGKGPVQNLLDHISDPLHNNLLSMVKSMDDPSGCPLERMRRCQFRCNQTRRSLVLSMLTITPKKKIIFGNNCFIYSTVRSMRL
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query305 2.2.26 [Sep-21-2011]
P14278265 Chlorophyll a-b binding p N/A no 0.681 0.784 0.532 5e-55
P07370265 Chlorophyll a-b binding p N/A no 0.711 0.818 0.515 1e-54
P22686256 Chlorophyll a-b binding p N/A no 0.750 0.894 0.489 2e-54
P12062265 Chlorophyll a-b binding p N/A no 0.708 0.815 0.504 6e-54
P27494265 Chlorophyll a-b binding p N/A no 0.681 0.784 0.518 7e-54
P12328264 Chlorophyll a-b binding p N/A no 0.740 0.856 0.483 8e-54
P12470266 Chlorophyll a-b binding p N/A no 0.711 0.815 0.511 9e-54
P27518265 Chlorophyll a-b binding p N/A no 0.678 0.781 0.529 9e-54
P12469267 Chlorophyll a-b binding p N/A no 0.718 0.820 0.506 1e-53
P27493265 Chlorophyll a-b binding p N/A no 0.711 0.818 0.506 1e-53
>sp|P14278|CB24_SOLLC Chlorophyll a-b binding protein 4, chloroplastic OS=Solanum lycopersicum GN=CAB4 PE=2 SV=1 Back     alignment and function desciption
 Score =  214 bits (546), Expect = 5e-55,   Method: Compositional matrix adjust.
 Identities = 116/218 (53%), Positives = 142/218 (65%), Gaps = 10/218 (4%)

Query: 25  ESLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWA 84
           +S+WYGE+RP++LGP     PSYLTGE PGDYG+D AGLS DP  F +    E++H RWA
Sbjct: 46  QSIWYGEDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHCRWA 105

Query: 85  MLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIAI 144
           MLGALG + PE+L   G     E VW++ G        LDYLG P  +L  +Q ++ I  
Sbjct: 106 MLGALGCVFPEILSKNGV-KFGEAVWFKAGSQIFSEGGLDYLGNP--NLVHAQSILAIWA 162

Query: 145 CQALLMVGPECARYCGIEALEPLGIFLPGDINYPGGALFDPLNLSKDPVAFEELKVKEIK 204
           CQ +LM   E  R  G     PLG  L  D  YPGGA FDPL L+ DP AF ELKVKEIK
Sbjct: 163 CQVVLMGFVEGYRVGG----GPLGEGL--DKIYPGGA-FDPLGLADDPEAFAELKVKEIK 215

Query: 205 NGRLAMVAWLGFYIQAAFTGKGPVQNLLDHISDPLHNN 242
           NGRLAM +  GF++QA  TGKGP++NL DHI+DP+ NN
Sbjct: 216 NGRLAMFSMFGFFVQAIVTGKGPIENLSDHINDPVANN 253
The light-harvesting complex (LHC) functions as a light receptor, it captures and delivers excitation energy to photosystems with which it is closely associated.
Solanum lycopersicum (taxid: 4081)
>sp|P07370|CB2B_SOLLC Chlorophyll a-b binding protein 1B, chloroplastic OS=Solanum lycopersicum GN=CAB1B PE=3 SV=1 Back     alignment and function description
>sp|P22686|CB2_CHLMO Chlorophyll a-b binding protein of LHCII type I, chloroplastic OS=Chlamydomonas moewusii PE=2 SV=1 Back     alignment and function description
>sp|P12062|CB26_PETSP Chlorophyll a-b binding protein 37, chloroplastic OS=Petunia sp. GN=CAB37 PE=3 SV=1 Back     alignment and function description
>sp|P27494|CB23_TOBAC Chlorophyll a-b binding protein 36, chloroplastic OS=Nicotiana tabacum GN=CAB36 PE=3 SV=1 Back     alignment and function description
>sp|P12328|CB21_LEMGI Chlorophyll a-b binding protein of LHCII type I, chloroplastic OS=Lemna gibba PE=3 SV=1 Back     alignment and function description
>sp|P12470|CB25_NICPL Chlorophyll a-b binding protein E, chloroplastic OS=Nicotiana plumbaginifolia GN=CABE PE=3 SV=1 Back     alignment and function description
>sp|P27518|CB21_GOSHI Chlorophyll a-b binding protein 151, chloroplastic OS=Gossypium hirsutum GN=CAB-151 PE=2 SV=2 Back     alignment and function description
>sp|P12469|CB23_NICPL Chlorophyll a-b binding protein C, chloroplastic OS=Nicotiana plumbaginifolia GN=CABC PE=3 SV=1 Back     alignment and function description
>sp|P27493|CB22_TOBAC Chlorophyll a-b binding protein 21, chloroplastic OS=Nicotiana tabacum GN=CAB21 PE=2 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query305
297839529330 chlorophyll A-B binding family protein [ 0.809 0.748 0.838 1e-123
449455655338 PREDICTED: chlorophyll a-b binding prote 0.813 0.733 0.835 1e-122
224083380338 light-harvesting complex II protein Lhcb 0.806 0.727 0.837 1e-122
15223108327 putative chlorophyll a/b-binding protein 0.809 0.755 0.817 1e-121
449525738338 PREDICTED: chlorophyll a-b binding prote 0.813 0.733 0.831 1e-121
358248178331 uncharacterized protein LOC100786260 [Gl 0.8 0.737 0.831 1e-120
225457685331 PREDICTED: chlorophyll a-b binding prote 0.819 0.755 0.872 1e-119
255539358329 chlorophyll A/B binding protein, putativ 0.813 0.753 0.842 1e-117
115478412321 Os09g0296800 [Oryza sativa Japonica Grou 0.757 0.719 0.796 1e-110
125563122321 hypothetical protein OsI_30775 [Oryza sa 0.757 0.719 0.792 1e-109
>gi|297839529|ref|XP_002887646.1| chlorophyll A-B binding family protein [Arabidopsis lyrata subsp. lyrata] gi|297333487|gb|EFH63905.1| chlorophyll A-B binding family protein [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information
 Score =  447 bits (1151), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 207/247 (83%), Positives = 229/247 (92%)

Query: 3   ETKKAALQDSSKFKALARQARNESLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAG 62
           E KK A+++SS+FKA A++ARN+S WYG+ERPRW GPIPYDYP YLTGELPGDYGFD+AG
Sbjct: 84  EKKKEAVENSSRFKAKAQEARNDSKWYGKERPRWFGPIPYDYPPYLTGELPGDYGFDIAG 143

Query: 63  LSKDPMAFQKYFNFEILHARWAMLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGET 122
           L KD + F KYFNFEILHARWAML ALGAL+PEVLD+ GAFH  EPVWWRVGYSKLQGET
Sbjct: 144 LGKDRLTFDKYFNFEILHARWAMLAALGALIPEVLDLTGAFHFAEPVWWRVGYSKLQGET 203

Query: 123 LDYLGIPGLHLAGSQGVIVIAICQALLMVGPECARYCGIEALEPLGIFLPGDINYPGGAL 182
           LDYLGIPGLH+AGSQGVIVIAICQ LLMVGPE ARYCGIEALEPLGI+LPGDINYPGG L
Sbjct: 204 LDYLGIPGLHVAGSQGVIVIAICQVLLMVGPEYARYCGIEALEPLGIYLPGDINYPGGTL 263

Query: 183 FDPLNLSKDPVAFEELKVKEIKNGRLAMVAWLGFYIQAAFTGKGPVQNLLDHISDPLHNN 242
           FDPLNLS+DPVAFE+LKVKEIKNGRLAMVAWLGFY QAAFTGKGPVQNL+DH+SDPLHNN
Sbjct: 264 FDPLNLSEDPVAFEDLKVKEIKNGRLAMVAWLGFYAQAAFTGKGPVQNLVDHVSDPLHNN 323

Query: 243 LLSMVKS 249
           LL+M+++
Sbjct: 324 LLAMLQT 330

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|449455655|ref|XP_004145567.1| PREDICTED: chlorophyll a-b binding protein of LHCII type I, chloroplastic-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|224083380|ref|XP_002307004.1| light-harvesting complex II protein Lhcb7 [Populus trichocarpa] gi|222856453|gb|EEE94000.1| light-harvesting complex II protein Lhcb7 [Populus trichocarpa] Back     alignment and taxonomy information
>gi|15223108|ref|NP_177783.1| putative chlorophyll a/b-binding protein [Arabidopsis thaliana] gi|12323973|gb|AAG51944.1|AC015450_5 putative chlorophyll A-B binding protein; 65434-67056 [Arabidopsis thaliana] gi|332197739|gb|AEE35860.1| putative chlorophyll a/b-binding protein [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|449525738|ref|XP_004169873.1| PREDICTED: chlorophyll a-b binding protein of LHCII type I, chloroplastic-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|358248178|ref|NP_001240088.1| uncharacterized protein LOC100786260 [Glycine max] gi|255636882|gb|ACU18774.1| unknown [Glycine max] Back     alignment and taxonomy information
>gi|225457685|ref|XP_002276647.1| PREDICTED: chlorophyll a-b binding protein of LHCII type I, chloroplastic [Vitis vinifera] gi|297745621|emb|CBI40786.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|255539358|ref|XP_002510744.1| chlorophyll A/B binding protein, putative [Ricinus communis] gi|223551445|gb|EEF52931.1| chlorophyll A/B binding protein, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|115478412|ref|NP_001062801.1| Os09g0296800 [Oryza sativa Japonica Group] gi|50725078|dbj|BAD33211.1| putative chlorophyll a/b-binding protein [Oryza sativa Japonica Group] gi|113631034|dbj|BAF24715.1| Os09g0296800 [Oryza sativa Japonica Group] Back     alignment and taxonomy information
>gi|125563122|gb|EAZ08502.1| hypothetical protein OsI_30775 [Oryza sativa Indica Group] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query305
TAIR|locus:2011691327 AT1G76570 [Arabidopsis thalian 0.809 0.755 0.817 3.1e-115
TAIR|locus:2089139266 LHCB2.3 "photosystem II light 0.681 0.781 0.532 7e-54
TAIR|locus:2044988265 LHCB2.2 "photosystem II light 0.691 0.796 0.520 1e-52
TAIR|locus:2042148265 LHCB2.1 "photosystem II light 0.691 0.796 0.520 1e-52
TAIR|locus:2162540265 LHCB3 "light-harvesting chloro 0.681 0.784 0.504 1.5e-51
UNIPROTKB|P12331261 CAB2R "Chlorophyll a-b binding 0.718 0.839 0.502 1.3e-50
TAIR|locus:2019287267 CAB3 "chlorophyll A/B binding 0.714 0.816 0.486 1.3e-50
TAIR|locus:2019372267 CAB2 "chlorophyll A/B-binding 0.714 0.816 0.486 1.3e-50
TAIR|locus:2019322267 CAB1 "chlorophyll A/B binding 0.714 0.816 0.486 1.3e-50
UNIPROTKB|P12330265 CAB1R "Chlorophyll a-b binding 0.691 0.796 0.515 1.7e-50
TAIR|locus:2011691 AT1G76570 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1136 (405.0 bits), Expect = 3.1e-115, P = 3.1e-115
 Identities = 202/247 (81%), Positives = 227/247 (91%)

Query:     3 ETKKAALQDSSKFKALARQARNESLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAG 62
             E KK A+++SS+FK+ A++ARN+S WYG+ERPRW GPIPYDYP YLTGELPGDYGFD+AG
Sbjct:    81 EKKKEAVENSSRFKSKAQEARNDSKWYGKERPRWFGPIPYDYPPYLTGELPGDYGFDIAG 140

Query:    63 LSKDPMAFQKYFNFEILHARWAMLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGET 122
             L KD + F KYFNFEILHARWAML ALGAL+PEV D+ G FH  EPVWWRVGYSKLQGET
Sbjct:   141 LGKDRLTFDKYFNFEILHARWAMLAALGALIPEVFDLTGTFHFAEPVWWRVGYSKLQGET 200

Query:   123 LDYLGIPGLHLAGSQGVIVIAICQALLMVGPECARYCGIEALEPLGIFLPGDINYPGGAL 182
             L+YLGIPGLH+AGSQGVIVIAICQ LLMVGPE ARYCGIEALEPLGI+LPGDINYPGG L
Sbjct:   201 LEYLGIPGLHVAGSQGVIVIAICQVLLMVGPEYARYCGIEALEPLGIYLPGDINYPGGTL 260

Query:   183 FDPLNLSKDPVAFEELKVKEIKNGRLAMVAWLGFYIQAAFTGKGPVQNLLDHISDPLHNN 242
             FDPLNLS+DPVAFE+LKVKEIKNGRLAMVAWLGFY QAAFTGKGPVQNL+DH+SDPLHNN
Sbjct:   261 FDPLNLSEDPVAFEDLKVKEIKNGRLAMVAWLGFYAQAAFTGKGPVQNLVDHVSDPLHNN 320

Query:   243 LLSMVKS 249
             L++M+++
Sbjct:   321 LIAMLQT 327
GO:0009507 "chloroplast" evidence=ISM
GO:0009765 "photosynthesis, light harvesting" evidence=IEA
GO:0015979 "photosynthesis" evidence=ISS
GO:0016020 "membrane" evidence=IEA
GO:0016168 "chlorophyll binding" evidence=ISS
GO:0030076 "light-harvesting complex" evidence=ISS
GO:0009637 "response to blue light" evidence=IEP
GO:0010218 "response to far red light" evidence=IEP
GO:0010264 "myo-inositol hexakisphosphate biosynthetic process" evidence=RCA
GO:0015996 "chlorophyll catabolic process" evidence=RCA
TAIR|locus:2089139 LHCB2.3 "photosystem II light harvesting complex gene 2.3" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2044988 LHCB2.2 "photosystem II light harvesting complex gene 2.2" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2042148 LHCB2.1 "photosystem II light harvesting complex gene 2.1" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2162540 LHCB3 "light-harvesting chlorophyll B-binding protein 3" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
UNIPROTKB|P12331 CAB2R "Chlorophyll a-b binding protein 2, chloroplastic" [Oryza sativa Japonica Group (taxid:39947)] Back     alignment and assigned GO terms
TAIR|locus:2019287 CAB3 "chlorophyll A/B binding protein 3" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2019372 CAB2 "chlorophyll A/B-binding protein 2" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2019322 CAB1 "chlorophyll A/B binding protein 1" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
UNIPROTKB|P12330 CAB1R "Chlorophyll a-b binding protein 1, chloroplastic" [Oryza sativa Japonica Group (taxid:39947)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
fgenesh2_kg.2__1945__AT1G76570.1
annotation not avaliable (330 aa)
(Arabidopsis lyrata)
Predicted Functional Partners:
 
Sorry, there are no predicted associations at the current settings.
 

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query305
PLN00171324 PLN00171, PLN00171, photosystem light-harvesting c 0.0
PLN00025262 PLN00025, PLN00025, photosystem II light harvestin 2e-83
PLN00147252 PLN00147, PLN00147, light-harvesting complex I chl 9e-50
PLN00048262 PLN00048, PLN00048, photosystem I light harvesting 1e-46
PLN00101250 PLN00101, PLN00101, Photosystem I light-harvesting 5e-40
PLN00098267 PLN00098, PLN00098, light-harvesting complex I chl 4e-39
pfam00504135 pfam00504, Chloroa_b-bind, Chlorophyll A-B binding 8e-39
PLN00097244 PLN00097, PLN00097, photosystem I light harvesting 1e-38
PLN00099243 PLN00099, PLN00099, light-harvesting complex IChlo 5e-37
PLN00187286 PLN00187, PLN00187, photosystem II light-harvestin 3e-36
PLN00100246 PLN00100, PLN00100, light-harvesting complex chlor 3e-29
PLN00170255 PLN00170, PLN00170, photosystem II light-harvestin 2e-19
PLN00089209 PLN00089, PLN00089, fucoxanthin-chlorophyll a/c bi 2e-09
pfam00504135 pfam00504, Chloroa_b-bind, Chlorophyll A-B binding 1e-06
pfam00504135 pfam00504, Chloroa_b-bind, Chlorophyll A-B binding 3e-04
PLN00120202 PLN00120, PLN00120, fucoxanthin-chlorophyll a-c bi 7e-04
>gnl|CDD|215088 PLN00171, PLN00171, photosystem light-harvesting complex -chlorophyll a/b binding protein Lhcb7; Provisional Back     alignment and domain information 
 Score =  530 bits (1368), Expect = 0.0
 Identities = 211/248 (85%), Positives = 231/248 (93%)

Query: 1   MLETKKAALQDSSKFKALARQARNESLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDV 60
           + ETKKAA+++SS FKA A++ARNES WYGEERPRWLGPIPYDYP +LTGELPGDYGFD+
Sbjct: 76  LEETKKAAVEESSAFKAAAQKARNESFWYGEERPRWLGPIPYDYPDHLTGELPGDYGFDI 135

Query: 61  AGLSKDPMAFQKYFNFEILHARWAMLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQG 120
           AGL KDP+AF KYFNFEILHARWAML ALG ++PEVLD+ GA H  EPVWWRVGY+KLQG
Sbjct: 136 AGLGKDPVAFDKYFNFEILHARWAMLAALGVVIPEVLDLFGAVHFAEPVWWRVGYAKLQG 195

Query: 121 ETLDYLGIPGLHLAGSQGVIVIAICQALLMVGPECARYCGIEALEPLGIFLPGDINYPGG 180
           +TLDYLGIPGLH+AGSQGVIVIAICQALLMVGPE ARYCGIEALEPLGI+LPGDINYPGG
Sbjct: 196 DTLDYLGIPGLHIAGSQGVIVIAICQALLMVGPEYARYCGIEALEPLGIYLPGDINYPGG 255

Query: 181 ALFDPLNLSKDPVAFEELKVKEIKNGRLAMVAWLGFYIQAAFTGKGPVQNLLDHISDPLH 240
           ALFDPL LSKDPVAFE+LKVKEIKNGRLAMVAWLGFYIQAA TGKGPVQNL+DH+SDPLH
Sbjct: 256 ALFDPLGLSKDPVAFEDLKVKEIKNGRLAMVAWLGFYIQAAVTGKGPVQNLVDHLSDPLH 315

Query: 241 NNLLSMVK 248
           NNLLS +K
Sbjct: 316 NNLLSSLK 323

Length = 324
>gnl|CDD|215033 PLN00025, PLN00025, photosystem II light harvesting chlorophyll a/b binding protein; Provisional Back     alignment and domain information
>gnl|CDD|215076 PLN00147, PLN00147, light-harvesting complex I chlorophyll-a/b binding protein Lhca5; Provisional Back     alignment and domain information
>gnl|CDD|177680 PLN00048, PLN00048, photosystem I light harvesting chlorophyll a/b binding protein 3; Provisional Back     alignment and domain information
>gnl|CDD|215055 PLN00101, PLN00101, Photosystem I light-harvesting complex type 4 protein; Provisional Back     alignment and domain information
>gnl|CDD|177716 PLN00098, PLN00098, light-harvesting complex I chlorophyll a/b-binding protein (Lhac); Provisional Back     alignment and domain information
>gnl|CDD|215956 pfam00504, Chloroa_b-bind, Chlorophyll A-B binding protein Back     alignment and domain information
>gnl|CDD|165670 PLN00097, PLN00097, photosystem I light harvesting complex Lhca2/4, chlorophyll a/b binding; Provisional Back     alignment and domain information
>gnl|CDD|177717 PLN00099, PLN00099, light-harvesting complex IChlorophyll A-B binding protein Lhca1; Provisional Back     alignment and domain information
>gnl|CDD|177781 PLN00187, PLN00187, photosystem II light-harvesting complex II protein Lhcb4; Provisional Back     alignment and domain information
>gnl|CDD|215054 PLN00100, PLN00100, light-harvesting complex chlorophyll-a/b protein of photosystem I (Lhca); Provisional Back     alignment and domain information
>gnl|CDD|215087 PLN00170, PLN00170, photosystem II light-harvesting-Chl-binding protein Lhcb6 (CP24); Provisional Back     alignment and domain information
>gnl|CDD|177710 PLN00089, PLN00089, fucoxanthin-chlorophyll a/c binding protein; Provisional Back     alignment and domain information
>gnl|CDD|215956 pfam00504, Chloroa_b-bind, Chlorophyll A-B binding protein Back     alignment and domain information
>gnl|CDD|215956 pfam00504, Chloroa_b-bind, Chlorophyll A-B binding protein Back     alignment and domain information
>gnl|CDD|215063 PLN00120, PLN00120, fucoxanthin-chlorophyll a-c binding protein; Provisional Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 305
PLN00171324 photosystem light-harvesting complex -chlorophyll 100.0
PLN00025262 photosystem II light harvesting chlorophyll a/b bi 100.0
PLN00187286 photosystem II light-harvesting complex II protein 100.0
PLN00098267 light-harvesting complex I chlorophyll a/b-binding 100.0
PLN00101250 Photosystem I light-harvesting complex type 4 prot 100.0
PLN00147252 light-harvesting complex I chlorophyll-a/b binding 100.0
PLN00097244 photosystem I light harvesting complex Lhca2/4, ch 100.0
PLN00048262 photosystem I light harvesting chlorophyll a/b bin 100.0
PLN00099243 light-harvesting complex IChlorophyll A-B binding 100.0
PLN00100246 light-harvesting complex chlorophyll-a/b protein o 100.0
PLN00170255 photosystem II light-harvesting-Chl-binding protei 100.0
PLN00089209 fucoxanthin-chlorophyll a/c binding protein; Provi 100.0
PF00504156 Chloroa_b-bind: Chlorophyll A-B binding protein; I 100.0
PLN00120202 fucoxanthin-chlorophyll a-c binding protein; Provi 100.0
PLN00098267 light-harvesting complex I chlorophyll a/b-binding 99.75
PLN00147252 light-harvesting complex I chlorophyll-a/b binding 99.68
PLN00171324 photosystem light-harvesting complex -chlorophyll 99.67
PLN00097244 photosystem I light harvesting complex Lhca2/4, ch 99.64
PLN00187286 photosystem II light-harvesting complex II protein 99.63
PLN00025262 photosystem II light harvesting chlorophyll a/b bi 99.63
PLN00048262 photosystem I light harvesting chlorophyll a/b bin 99.62
PLN00170255 photosystem II light-harvesting-Chl-binding protei 99.62
PLN00099243 light-harvesting complex IChlorophyll A-B binding 99.62
PLN00089209 fucoxanthin-chlorophyll a/c binding protein; Provi 99.59
PLN00101250 Photosystem I light-harvesting complex type 4 prot 99.57
PLN00100246 light-harvesting complex chlorophyll-a/b protein o 99.54
PF00504156 Chloroa_b-bind: Chlorophyll A-B binding protein; I 99.49
PLN00120202 fucoxanthin-chlorophyll a-c binding protein; Provi 99.35
PHA0233735 putative high light inducible protein 98.18
PLN00084214 photosystem II subunit S (PsbS); Provisional 97.88
PLN00014250 light-harvesting-like protein 3; Provisional 97.53
PHA0233735 putative high light inducible protein 97.32
PLN00014250 light-harvesting-like protein 3; Provisional 95.68
PLN00084214 photosystem II subunit S (PsbS); Provisional 92.91
>PLN00171 photosystem light-harvesting complex -chlorophyll a/b binding protein Lhcb7; Provisional Back     alignment and domain information 
Probab=100.00  E-value=3.5e-74  Score=545.09  Aligned_cols=248  Identities=85%  Similarity=1.464  Sum_probs=230.5

Q ss_pred             CccchHHHhhhchHHHHHHhhhcccCcccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccCCCCChHHHHHHHHHHHhh
Q 021923            1 MLETKKAALQDSSKFKALARQARNESLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILH   80 (305)
Q Consensus         1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~P~~LdGs~pGd~gFDPLGLs~d~~~l~~~ReAELKH   80 (305)
                      |||+||++++++++++++++++|+.+.||+++|++|||+++++.|+||||++|||+|||||||++|+++++|||++||||
T Consensus        76 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~R~~wl~~~~~~~P~yLdG~lpGD~GFDPLGL~~dp~~l~~~reaELkH  155 (324)
T PLN00171         76 LEETKKAAVEESSAFKAAAQKARNESFWYGEERPRWLGPIPYDYPDHLTGELPGDYGFDIAGLGKDPVAFDKYFNFEILH  155 (324)
T ss_pred             HHHhhHHHHHhHHHHHHHHHhhcccCcccCCCCccccCCCCCCCCcccCCCCCcccCCCccccccCHHHHHHHHHHHhcc
Confidence            58999999999999999999999999999999999999887889999999999999999999999999999999999999


Q ss_pred             chhHHHHhhhhhhhhhhhccCccccCcchhhhhcccccccccccccCCCcccccchhhHHHHHHHHHHHhhcchhhhccc
Q 021923           81 ARWAMLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIAICQALLMVGPECARYCG  160 (305)
Q Consensus        81 GRvAMLAvvG~lv~E~l~~~G~~~f~~p~w~~aG~~~~~~~~l~~~~~p~~~~a~~~~v~~i~~~qi~l~~~~E~~r~~~  160 (305)
                      |||||||++|+++||++++.|.+++++|.||++|+..+++..++|+++|+...++.+.+.+++++|+++|+++|+.|+.+
T Consensus       156 GR~AMLA~~G~lv~e~l~~~g~~~~~~p~W~~aG~~~~~g~~~~y~~~p~~~~~~~q~l~~i~~iEillm~g~E~~R~~~  235 (324)
T PLN00171        156 ARWAMLAALGVVIPEVLDLFGAVHFAEPVWWRVGYAKLQGDTLDYLGIPGLHIAGSQGVIVIAICQALLMVGPEYARYCG  235 (324)
T ss_pred             chHHHHHHhhHHHHHHhccCCccccCccchhhcccccccccchhhccCCccccchhHHHHHHHHHHHHHhhhhhheeecc
Confidence            99999999999999999888878888899999998877777788888887555667888899999999999999999988


Q ss_pred             ccccCCCCccCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHhhhHHHHHHHHHHHHhhhhcCCCchhhhhhhhcCccc
Q 021923          161 IEALEPLGIFLPGDINYPGGALFDPLNLSKDPVAFEELKVKEIKNGRLAMVAWLGFYIQAAFTGKGPVQNLLDHISDPLH  240 (305)
Q Consensus       161 ~~~~~~~g~~~pGD~~~PGg~gFDPLgl~kdpe~~~~~k~kEIKNGRLAMlA~~G~vaQe~vTG~gPl~nL~~hladP~~  240 (305)
                      +...++.+.+.|||..||||.+|||||+++|+++++++|++|||||||||+|++||++|+.+||++|++||.+|++||+|
T Consensus       236 ~~~~~~~g~~~PGD~gYPGG~~FDPLGl~~d~~~~~~~k~kELkNGRLAM~A~lG~~vq~~vTG~GPlenL~~hladP~~  315 (324)
T PLN00171        236 IEALEPLGIYLPGDINYPGGALFDPLGLSKDPVAFEDLKVKEIKNGRLAMVAWLGFYIQAAVTGKGPVQNLVDHLSDPLH  315 (324)
T ss_pred             ccccCCccccCCCcccCCcccCCCccccCCCHHHHHHHHHHHHhhhHHHHHHHHHHHHhHhhcCCChHHHHHHHhcCccc
Confidence            75545445677999999999889999999999999999999999999999999999999999999999999999999999


Q ss_pred             cchhhhcc
Q 021923          241 NNLLSMVK  248 (305)
Q Consensus       241 ~n~~~~~~  248 (305)
                      |||++++.
T Consensus       316 ~Ni~~~~~  323 (324)
T PLN00171        316 NNLLSSLK  323 (324)
T ss_pred             cchHHHhc
Confidence            99999864

>PLN00025 photosystem II light harvesting chlorophyll a/b binding protein; Provisional Back     alignment and domain information
>PLN00187 photosystem II light-harvesting complex II protein Lhcb4; Provisional Back     alignment and domain information
>PLN00098 light-harvesting complex I chlorophyll a/b-binding protein (Lhac); Provisional Back     alignment and domain information
>PLN00101 Photosystem I light-harvesting complex type 4 protein; Provisional Back     alignment and domain information
>PLN00147 light-harvesting complex I chlorophyll-a/b binding protein Lhca5; Provisional Back     alignment and domain information
>PLN00097 photosystem I light harvesting complex Lhca2/4, chlorophyll a/b binding; Provisional Back     alignment and domain information
>PLN00048 photosystem I light harvesting chlorophyll a/b binding protein 3; Provisional Back     alignment and domain information
>PLN00099 light-harvesting complex IChlorophyll A-B binding protein Lhca1; Provisional Back     alignment and domain information
>PLN00100 light-harvesting complex chlorophyll-a/b protein of photosystem I (Lhca); Provisional Back     alignment and domain information
>PLN00170 photosystem II light-harvesting-Chl-binding protein Lhcb6 (CP24); Provisional Back     alignment and domain information
>PLN00089 fucoxanthin-chlorophyll a/c binding protein; Provisional Back     alignment and domain information
>PF00504 Chloroa_b-bind: Chlorophyll A-B binding protein; InterPro: IPR022796 The light-harvesting complex (LHC) consists of chlorophylls A and B and the chlorophyll A-B binding protein Back     alignment and domain information
>PLN00120 fucoxanthin-chlorophyll a-c binding protein; Provisional Back     alignment and domain information
>PLN00098 light-harvesting complex I chlorophyll a/b-binding protein (Lhac); Provisional Back     alignment and domain information
>PLN00147 light-harvesting complex I chlorophyll-a/b binding protein Lhca5; Provisional Back     alignment and domain information
>PLN00171 photosystem light-harvesting complex -chlorophyll a/b binding protein Lhcb7; Provisional Back     alignment and domain information
>PLN00097 photosystem I light harvesting complex Lhca2/4, chlorophyll a/b binding; Provisional Back     alignment and domain information
>PLN00187 photosystem II light-harvesting complex II protein Lhcb4; Provisional Back     alignment and domain information
>PLN00025 photosystem II light harvesting chlorophyll a/b binding protein; Provisional Back     alignment and domain information
>PLN00048 photosystem I light harvesting chlorophyll a/b binding protein 3; Provisional Back     alignment and domain information
>PLN00170 photosystem II light-harvesting-Chl-binding protein Lhcb6 (CP24); Provisional Back     alignment and domain information
>PLN00099 light-harvesting complex IChlorophyll A-B binding protein Lhca1; Provisional Back     alignment and domain information
>PLN00089 fucoxanthin-chlorophyll a/c binding protein; Provisional Back     alignment and domain information
>PLN00101 Photosystem I light-harvesting complex type 4 protein; Provisional Back     alignment and domain information
>PLN00100 light-harvesting complex chlorophyll-a/b protein of photosystem I (Lhca); Provisional Back     alignment and domain information
>PF00504 Chloroa_b-bind: Chlorophyll A-B binding protein; InterPro: IPR022796 The light-harvesting complex (LHC) consists of chlorophylls A and B and the chlorophyll A-B binding protein Back     alignment and domain information
>PLN00120 fucoxanthin-chlorophyll a-c binding protein; Provisional Back     alignment and domain information
>PHA02337 putative high light inducible protein Back     alignment and domain information
>PLN00084 photosystem II subunit S (PsbS); Provisional Back     alignment and domain information
>PLN00014 light-harvesting-like protein 3; Provisional Back     alignment and domain information
>PHA02337 putative high light inducible protein Back     alignment and domain information
>PLN00014 light-harvesting-like protein 3; Provisional Back     alignment and domain information
>PLN00084 photosystem II subunit S (PsbS); Provisional Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query305
1rwt_A232 Crystal Structure Of Spinach Major Light-harvesting 3e-53
2bhw_A232 Pea Light-Harvesting Complex Ii At 2.5 Angstrom Res 4e-53
1vcr_A232 An Icosahedral Assembly Of Light-Harvesting Chlorop 6e-53
2wsc_3276 Improved Model Of Plant Photosystem I Length = 276 2e-33
2wsc_1241 Improved Model Of Plant Photosystem I Length = 241 2e-30
2o01_1187 The Structure Of A Plant Photosystem I Supercomplex 3e-30
2o01_2186 The Structure Of A Plant Photosystem I Supercomplex 4e-30
2wsc_2269 Improved Model Of Plant Photosystem I Length = 269 8e-29
2wsc_4251 Improved Model Of Plant Photosystem I Length = 251 5e-28
3lw5_1170 Improved Model Of Plant Photosystem I Length = 170 5e-26
3lw5_2176 Improved Model Of Plant Photosystem I Length = 176 1e-22
3pl9_A243 Crystal Structure Of Spinach Minor Light-Harvesting 9e-22
2o01_4165 The Structure Of A Plant Photosystem I Supercomplex 1e-20
3lw5_4166 Improved Model Of Plant Photosystem I Length = 166 3e-20
2o01_3165 The Structure Of A Plant Photosystem I Supercomplex 2e-18
3lw5_3172 Improved Model Of Plant Photosystem I Length = 172 1e-15
>pdb|1RWT|A Chain A, Crystal Structure Of Spinach Major Light-harvesting Complex At 2.72 Angstrom Resolution Length = 232 Back     alignment and structure 
Iteration: 1

 Score =  205 bits (521), Expect = 3e-53,   Method: Compositional matrix adjust.
 Identities = 113/231 (48%), Positives = 144/231 (62%), Gaps = 10/231 (4%)
Query: 20  RQARNESLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEIL 79
           +  ++ S WYG +R ++LGP   + PSYLTGE PGDYG+D AGLS DP  F K    E++
Sbjct: 8   KTVQSSSPWYGPDRVKYLGPFSGESPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVI 67
Query: 80  HARWAMLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGV 139
           H RWAMLGALG + PE+L   G     E VW++ G        LDYLG P L  A  Q +
Sbjct: 68  HCRWAMLGALGCVFPELLARNGV-KFGEAVWFKAGSQIFSEGGLDYLGNPSLVHA--QSI 124
Query: 140 IVIAICQALLMVGPECARYCGIEALEPLGIFLPGDINYPGGALFDPLNLSKDPVAFEELK 199
           + I  CQ +LM   E  R  G     PLG  +  D  YPGG+ FDPL L+ DP AF ELK
Sbjct: 125 LAIWACQVILMGAVEGYRIAG----GPLGEVV--DPLYPGGS-FDPLGLADDPEAFAELK 177
Query: 200 VKEIKNGRLAMVAWLGFYIQAAFTGKGPVQNLLDHISDPLHNNLLSMVKSM 250
           VKEIKNGRLAM +  GF++QA  TGKGP++NL DH++DP++NN  +   + 
Sbjct: 178 VKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWNFATNF 228
>pdb|2BHW|A Chain A, Pea Light-Harvesting Complex Ii At 2.5 Angstrom Resolution Length = 232 Back     alignment and structure
>pdb|1VCR|A Chain A, An Icosahedral Assembly Of Light-Harvesting Chlorophyll AB Protein Complex From Pea Thylakoid Membranes Length = 232 Back     alignment and structure
>pdb|2WSC|3 Chain 3, Improved Model Of Plant Photosystem I Length = 276 Back     alignment and structure
>pdb|2WSC|1 Chain 1, Improved Model Of Plant Photosystem I Length = 241 Back     alignment and structure
>pdb|2O01|1 Chain 1, The Structure Of A Plant Photosystem I Supercomplex At 3.4 Angstrom Resolution Length = 187 Back     alignment and structure
>pdb|2O01|2 Chain 2, The Structure Of A Plant Photosystem I Supercomplex At 3.4 Angstrom Resolution Length = 186 Back     alignment and structure
>pdb|2WSC|2 Chain 2, Improved Model Of Plant Photosystem I Length = 269 Back     alignment and structure
>pdb|2WSC|4 Chain 4, Improved Model Of Plant Photosystem I Length = 251 Back     alignment and structure
>pdb|3LW5|1 Chain 1, Improved Model Of Plant Photosystem I Length = 170 Back     alignment and structure
>pdb|3LW5|2 Chain 2, Improved Model Of Plant Photosystem I Length = 176 Back     alignment and structure
>pdb|3PL9|A Chain A, Crystal Structure Of Spinach Minor Light-Harvesting Complex Cp29 At 2.80 Angstrom Resolution Length = 243 Back     alignment and structure
>pdb|2O01|4 Chain 4, The Structure Of A Plant Photosystem I Supercomplex At 3.4 Angstrom Resolution Length = 165 Back     alignment and structure
>pdb|3LW5|4 Chain 4, Improved Model Of Plant Photosystem I Length = 166 Back     alignment and structure
>pdb|2O01|3 Chain 3, The Structure Of A Plant Photosystem I Supercomplex At 3.4 Angstrom Resolution Length = 165 Back     alignment and structure
>pdb|3LW5|3 Chain 3, Improved Model Of Plant Photosystem I Length = 172 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query305
2bhw_A232 Chlorophyll A-B binding protein AB80; LHC-II, phot 9e-65
2wsc_2269 LHCA2, type II chlorophyll A/B binding protein fro 3e-56
2wsc_3276 LHCA3, type II chlorophyll A/B binding protein fro 3e-56
2wsc_4251 Chlorophyll A-B binding protein P4, chloroplastic; 5e-51
2wsc_1241 AT3G54890, LHCA1; photosynthesis, electron transfe 2e-48
3pl9_A243 Chlorophyll A-B binding protein; CP29, light-harve 8e-48
>2bhw_A Chlorophyll A-B binding protein AB80; LHC-II, photosynthesis, light-harvesting, membrane protein, chloroplast, chromophore, membrane; HET: LUX NEX XAT CLA CHL LHG DGD; 2.50A {Pisum sativum} PDB: 1vcr_A* 1rwt_A* Length = 232 Back     alignment and structure
 Score =  202 bits (515), Expect = 9e-65
 Identities = 108/232 (46%), Positives = 139/232 (59%), Gaps = 10/232 (4%)

Query: 14  KFKALARQARNESLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKY 73
           K     + A + S WYG +R ++LGP   + PSYLTGE PGDYG+D AGLS DP  F K 
Sbjct: 2   KSATTKKVASSGSPWYGPDRVKYLGPFSGESPSYLTGEFPGDYGWDTAGLSADPETFSKN 61

Query: 74  FNFEILHARWAMLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHL 133
              E++H+RWAMLGALG++ PE+L   G     E VW++ G        LDYLG P   L
Sbjct: 62  RELEVIHSRWAMLGALGSVFPELLSRNGVKFG-EAVWFKAGSQIFSEGGLDYLGNPS--L 118

Query: 134 AGSQGVIVIAICQALLMVGPECARYCGIEALEPLGIFLPGDINYPGGALFDPLNLSKDPV 193
             +Q ++ I   Q +LM   E  R  G    E +    PG         FDPL L+ DP 
Sbjct: 119 VHAQSILAIWATQVILMGAVEGYRIAGGPLGEVVDPLYPGGS-------FDPLGLADDPE 171

Query: 194 AFEELKVKEIKNGRLAMVAWLGFYIQAAFTGKGPVQNLLDHISDPLHNNLLS 245
           AF ELKVKE+KNGRLAM +  GF++QA  TGKGP++NL DH++DP++NN  S
Sbjct: 172 AFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWS 223
>2wsc_2 LHCA2, type II chlorophyll A/B binding protein from photosystem I; photosynthesis, electron transfer, membrane proteins, large complexes; HET: CL1 PQN BCR LMU LMG SUC UNL; 3.30A {Pisum sativum} PDB: 2wse_2* 2wsf_2* 2o01_2* 3lw5_2* Length = 269 Back     alignment and structure
>2wsc_3 LHCA3, type II chlorophyll A/B binding protein from photosystem I; photosynthesis, electron transfer, membrane proteins, large complexes; HET: CL1 PQN BCR LMU LMG SUC UNL; 3.30A {Glycine max} PDB: 2wse_3* 2wsf_3* 3lw5_3* 2o01_3* Length = 276 Back     alignment and structure
>2wsc_4 Chlorophyll A-B binding protein P4, chloroplastic; photosynthesis, electron transfer, membrane proteins, large complexes; HET: CL1 PQN BCR LMU LMG SUC UNL; 3.30A {Pisum sativum} PDB: 2wse_4* 2wsf_4* 3lw5_4* 2o01_4* Length = 251 Back     alignment and structure
>2wsc_1 AT3G54890, LHCA1; photosynthesis, electron transfer, membrane proteins, large complexes; HET: CL1 PQN BCR LMU LMG SUC UNL; 3.30A {Arabidopsis thaliana} PDB: 2wse_1* 2wsf_1* 2o01_1* 3lw5_1* Length = 241 Back     alignment and structure
>3pl9_A Chlorophyll A-B binding protein; CP29, light-harvesting COMP membrane protein, plant, photosynthesis, chloroplast, thyla photosystem II; HET: CLA CHL LUT XAT NEX G3P HTG; 2.80A {Spinacia oleracea} Length = 243 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query305
2bhw_A232 Chlorophyll A-B binding protein AB80; LHC-II, phot 100.0
3pl9_A243 Chlorophyll A-B binding protein; CP29, light-harve 100.0
2wsc_2269 LHCA2, type II chlorophyll A/B binding protein fro 100.0
2wsc_3276 LHCA3, type II chlorophyll A/B binding protein fro 100.0
2wsc_4251 Chlorophyll A-B binding protein P4, chloroplastic; 100.0
2wsc_1241 AT3G54890, LHCA1; photosynthesis, electron transfe 100.0
2bhw_A232 Chlorophyll A-B binding protein AB80; LHC-II, phot 99.64
2wsc_2269 LHCA2, type II chlorophyll A/B binding protein fro 99.62
3pl9_A243 Chlorophyll A-B binding protein; CP29, light-harve 99.6
2wsc_1241 AT3G54890, LHCA1; photosynthesis, electron transfe 99.57
2wsc_4251 Chlorophyll A-B binding protein P4, chloroplastic; 99.57
2wsc_3276 LHCA3, type II chlorophyll A/B binding protein fro 99.48
>2bhw_A Chlorophyll A-B binding protein AB80; LHC-II, photosynthesis, light-harvesting, membrane protein, chloroplast, chromophore, membrane; HET: LUX NEX XAT CLA CHL LHG DGD; 2.50A {Pisum sativum} PDB: 1vcr_A* 1rwt_A* Back     alignment and structure
Probab=100.00  E-value=2.3e-64  Score=461.99  Aligned_cols=216  Identities=51%  Similarity=0.908  Sum_probs=190.5

Q ss_pred             cccCcccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccCCCCChHHHHHHHHHHHhhchhHHHHhhhhhhhhhhhccCc
Q 021923           23 RNESLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAMLGALGALVPEVLDMVGA  102 (305)
Q Consensus        23 ~~~~~~~~~~r~~~~~~~~~~~P~~LdGs~pGd~gFDPLGLs~d~~~l~~~ReAELKHGRvAMLAvvG~lv~E~l~~~G~  102 (305)
                      .+.|.||+++|++|+++++.+.|+||||++|||+|||||||++|+++++||||+|||||||||||++|+++||+++..| 
T Consensus        11 ~~~~~~~~~~r~~~l~~~~~~~P~~LdG~~pGD~GFDPLGLs~d~e~~~r~ReaELkHGR~AMLA~~G~lv~E~l~~~G-   89 (232)
T 2bhw_A           11 SSGSPWYGPDRVKYLGPFSGESPSYLTGEFPGDYGWDTAGLSADPETFSKNRELEVIHSRWAMLGALGSVFPELLSRNG-   89 (232)
T ss_dssp             CTTCTTSSTTCCCTTGGGCCSCCTTCCSCSTTCCSCCTTCTTCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTT-
T ss_pred             ccCCcccCCCcccccCccccCCccccCCcCCCCCCCCCCcCCCCHHHHHHHHHHHHhccchHHHhhhhhhhHHHhccCC-
Confidence            3468899999999999765689999999999999999999999999999999999999999999999999999998877 


Q ss_pred             cccCcchhhhhcccccccccccccCCCcccccchhhHHHHHHHHHHHhhcchhhhcccccccCCCCccCCCCCCCCCCCC
Q 021923          103 FHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIAICQALLMVGPECARYCGIEALEPLGIFLPGDINYPGGAL  182 (305)
Q Consensus       103 ~~f~~p~w~~aG~~~~~~~~l~~~~~p~~~~a~~~~v~~i~~~qi~l~~~~E~~r~~~~~~~~~~g~~~pGD~~~PGg~g  182 (305)
                      ++|+++.||++|...+++..++|+++|.+.  ..+.+.+++++|+++++.+|.+|+.+.    +.+.  ..|..||||+ 
T Consensus        90 ~~~~~~~w~~ag~~~~~~~~~~~~~~P~~~--~~q~i~~~~~~q~~~~g~~E~~r~~~g----~~g~--~~d~~~Pg~~-  160 (232)
T 2bhw_A           90 VKFGEAVWFKAGSQIFSEGGLDYLGNPSLV--HAQSILAIWATQVILMGAVEGYRIAGG----PLGE--VVDPLYPGGS-  160 (232)
T ss_dssp             CCCSCCSGGGSGGGGGSTTCEEGGGCTTSE--EECCHHHHHHHHHHHHHHHHHHHHHEE----TTEE--CSSSSCCCTT-
T ss_pred             cCCcccccccccchhccccchhcccCcchh--hHHHHHHHHHHHHHHHHHHHHHhhccC----cccc--cccccCCCcc-
Confidence            678889999998766666667788887633  346677888999999888999887651    1111  2356799997 


Q ss_pred             CCCCCCCCCHHHHHHHHHHHHhhhHHHHHHHHHHHHhhhhcCCCchhhhhhhhcCccccchhhhcc
Q 021923          183 FDPLNLSKDPVAFEELKVKEIKNGRLAMVAWLGFYIQAAFTGKGPVQNLLDHISDPLHNNLLSMVK  248 (305)
Q Consensus       183 FDPLgl~kdpe~~~~~k~kEIKNGRLAMlA~~G~vaQe~vTG~gPl~nL~~hladP~~~n~~~~~~  248 (305)
                      ||||++.+|+++++++|.+|||||||||+||+|+++|+.+||++|++||.+|++||+|||+++++.
T Consensus       161 fdPlgl~~~~~~~~~~~~~E~~nGRlAM~~~~g~~~~~~~tg~g~~~~l~~~~adP~~~n~~~~~~  226 (232)
T 2bhw_A          161 FDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWSYAT  226 (232)
T ss_dssp             SCTTCTTCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSCSHHHHHHHHHCTTTSSGGGGTT
T ss_pred             cccchhccchHHHHHHHHhhhhccchHHHHHHHHHHHHHhcCCChHHHHHHHhcChHHhHHHHHHH
Confidence            999999999999999999999999999999999999999999999999999999999999999865
>3pl9_A Chlorophyll A-B binding protein; CP29, light-harvesting COMP membrane protein, plant, photosynthesis, chloroplast, thyla photosystem II; HET: CLA CHL LUT XAT NEX G3P HTG; 2.80A {Spinacia oleracea} Back     alignment and structure
>2wsc_2 LHCA2, type II chlorophyll A/B binding protein from photosystem I; photosynthesis, electron transfer, membrane proteins, large complexes; HET: CL1 PQN BCR LMU LMG SUC UNL; 3.30A {Pisum sativum} PDB: 2wse_2* 2wsf_2* 2o01_2* 3lw5_2* Back     alignment and structure
>2wsc_3 LHCA3, type II chlorophyll A/B binding protein from photosystem I; photosynthesis, electron transfer, membrane proteins, large complexes; HET: CL1 PQN BCR LMU LMG SUC UNL; 3.30A {Glycine max} PDB: 2wse_3* 2wsf_3* 3lw5_3* 2o01_3* Back     alignment and structure
>2wsc_4 Chlorophyll A-B binding protein P4, chloroplastic; photosynthesis, electron transfer, membrane proteins, large complexes; HET: CL1 PQN BCR LMU LMG SUC UNL; 3.30A {Pisum sativum} PDB: 2wse_4* 2wsf_4* 3lw5_4* 2o01_4* Back     alignment and structure
>2wsc_1 AT3G54890, LHCA1; photosynthesis, electron transfer, membrane proteins, large complexes; HET: CL1 PQN BCR LMU LMG SUC UNL; 3.30A {Arabidopsis thaliana} PDB: 2wse_1* 2wsf_1* 2o01_1* 3lw5_1* Back     alignment and structure
>2bhw_A Chlorophyll A-B binding protein AB80; LHC-II, photosynthesis, light-harvesting, membrane protein, chloroplast, chromophore, membrane; HET: LUX NEX XAT CLA CHL LHG DGD; 2.50A {Pisum sativum} PDB: 1vcr_A* 1rwt_A* Back     alignment and structure
>2wsc_2 LHCA2, type II chlorophyll A/B binding protein from photosystem I; photosynthesis, electron transfer, membrane proteins, large complexes; HET: CL1 PQN BCR LMU LMG SUC UNL; 3.30A {Pisum sativum} PDB: 2wse_2* 2wsf_2* 2o01_2* 3lw5_2* Back     alignment and structure
>3pl9_A Chlorophyll A-B binding protein; CP29, light-harvesting COMP membrane protein, plant, photosynthesis, chloroplast, thyla photosystem II; HET: CLA CHL LUT XAT NEX G3P HTG; 2.80A {Spinacia oleracea} Back     alignment and structure
>2wsc_1 AT3G54890, LHCA1; photosynthesis, electron transfer, membrane proteins, large complexes; HET: CL1 PQN BCR LMU LMG SUC UNL; 3.30A {Arabidopsis thaliana} PDB: 2wse_1* 2wsf_1* 2o01_1* 3lw5_1* Back     alignment and structure
>2wsc_4 Chlorophyll A-B binding protein P4, chloroplastic; photosynthesis, electron transfer, membrane proteins, large complexes; HET: CL1 PQN BCR LMU LMG SUC UNL; 3.30A {Pisum sativum} PDB: 2wse_4* 2wsf_4* 3lw5_4* 2o01_4* Back     alignment and structure
>2wsc_3 LHCA3, type II chlorophyll A/B binding protein from photosystem I; photosynthesis, electron transfer, membrane proteins, large complexes; HET: CL1 PQN BCR LMU LMG SUC UNL; 3.30A {Glycine max} PDB: 2wse_3* 2wsf_3* 3lw5_3* 2o01_3* Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 305
d1rwta_218 f.43.1.1 (A:) Chlorophyll a-b binding protein {Spi 2e-73
>d1rwta_ f.43.1.1 (A:) Chlorophyll a-b binding protein {Spinach (Spinacia oleracea) [TaxId: 3562]} Length = 218 Back     information, alignment and structure

class: Membrane and cell surface proteins and peptides
fold: Chlorophyll a-b binding protein
superfamily: Chlorophyll a-b binding protein
family: Chlorophyll a-b binding protein
domain: Chlorophyll a-b binding protein
species: Spinach (Spinacia oleracea) [TaxId: 3562]

 Score =  223 bits (568), Expect = 2e-73
 Identities = 110/222 (49%), Positives = 138/222 (62%), Gaps = 10/222 (4%)

Query: 26  SLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAM 85
           S WYG +R ++LGP   + PSYLTGE PGDYG+D AGLS DP  F K    E++H RWAM
Sbjct: 1   SPWYGPDRVKYLGPFSGESPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAM 60

Query: 86  LGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIAIC 145
           LGALG + PE+L   G     E VW++ G        LDYLG P   L  +Q ++ I  C
Sbjct: 61  LGALGCVFPELLARNG-VKFGEAVWFKAGSQIFSEGGLDYLGNPS--LVHAQSILAIWAC 117

Query: 146 QALLMVGPECARYCGIEALEPLGIFLPGDINYPGGALFDPLNLSKDPVAFEELKVKEIKN 205
           Q +LM   E  R  G    E +      D  YPGG+ FDPL L+ DP AF ELKVKEIKN
Sbjct: 118 QVILMGAVEGYRIAGGPLGEVV------DPLYPGGS-FDPLGLADDPEAFAELKVKEIKN 170

Query: 206 GRLAMVAWLGFYIQAAFTGKGPVQNLLDHISDPLHNNLLSMV 247
           GRLAM +  GF++QA  TGKGP++NL DH++DP++NN  +  
Sbjct: 171 GRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWNFA 212

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query305
d1rwta_218 Chlorophyll a-b binding protein {Spinach (Spinacia 100.0
d1rwta_218 Chlorophyll a-b binding protein {Spinach (Spinacia 99.7
>d1rwta_ f.43.1.1 (A:) Chlorophyll a-b binding protein {Spinach (Spinacia oleracea) [TaxId: 3562]} Back     information, alignment and structure
class: Membrane and cell surface proteins and peptides
fold: Chlorophyll a-b binding protein
superfamily: Chlorophyll a-b binding protein
family: Chlorophyll a-b binding protein
domain: Chlorophyll a-b binding protein
species: Spinach (Spinacia oleracea) [TaxId: 3562]

Probab=100.00  E-value=4.3e-65  Score=459.98  Aligned_cols=213  Identities=52%  Similarity=0.906  Sum_probs=176.6

Q ss_pred             CcccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccCCCCChHHHHHHHHHHHhhchhHHHHhhhhhhhhhhhccCcccc
Q 021923           26 SLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAMLGALGALVPEVLDMVGAFHL  105 (305)
Q Consensus        26 ~~~~~~~r~~~~~~~~~~~P~~LdGs~pGd~gFDPLGLs~d~~~l~~~ReAELKHGRvAMLAvvG~lv~E~l~~~G~~~f  105 (305)
                      |+||+++|++|+|++..+.|+||||++|||+|||||||++|+++++||||+|||||||||||++|++++|+++.++ ..+
T Consensus         1 ~~~~~~~r~~~~~~~~~~~P~~LdGs~pGD~GFDPLgls~d~~~~~~~ReaELKHGR~AMLA~vG~~~~E~~~~~~-~~~   79 (218)
T d1rwta_           1 SPWYGPDRVKYLGPFSGESPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNG-VKF   79 (218)
T ss_dssp             CTTSSTTCCCTTGGGGCSCCTTCCSCSTTCCSCCTTCTTCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTT-CCC
T ss_pred             CCCCCCCCcccCCccccCCCcccCCCCCCCCCcCCcccCCCHHHHHHHHHHHHhhceehHhhhcceeehhhhccCC-CCC
Confidence            6899999999999876789999999999999999999999999999999999999999999999999999988765 345


Q ss_pred             CcchhhhhcccccccccccccCCCcccccchhhHHHHHHHHHHHhhcchhhhcccccccCCCCccCCCCCCCCCCCCCCC
Q 021923          106 VEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIAICQALLMVGPECARYCGIEALEPLGIFLPGDINYPGGALFDP  185 (305)
Q Consensus       106 ~~p~w~~aG~~~~~~~~l~~~~~p~~~~a~~~~v~~i~~~qi~l~~~~E~~r~~~~~~~~~~g~~~pGD~~~PGg~gFDP  185 (305)
                      ..+.|++++........++++..|..  ...+.+..+..+++.++..+|..+.....    .  ....|..|||+ +|||
T Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~e~~~~~~~~----~--~~~~~~~~~~g-~fdP  150 (218)
T d1rwta_          80 GEAVWFKAGSQIFSEGGLDYLGNPSL--VHAQSILAIWACQVILMGAVEGYRIAGGP----L--GEVVDPLYPGG-SFDP  150 (218)
T ss_dssp             SCCSHHHHGGGGGSTTCBCGGGCTTS--CCBCCHHHHHHHHHHHHHHHHHHHHHCBT----T--BCCSSSSCCCG-GGCT
T ss_pred             CCcccccccccccCcchhhhhcCchH--HHHHHHHHHHHHHHHHHhhhhhhcccCCC----c--ccccCCCCCCC-Cccc
Confidence            66788887766555555566655542  22344555555566666667776654211    1  11235568887 7999


Q ss_pred             CCCCCCHHHHHHHHHHHHhhhHHHHHHHHHHHHhhhhcCCCchhhhhhhhcCccccchhhhcc
Q 021923          186 LNLSKDPVAFEELKVKEIKNGRLAMVAWLGFYIQAAFTGKGPVQNLLDHISDPLHNNLLSMVK  248 (305)
Q Consensus       186 Lgl~kdpe~~~~~k~kEIKNGRLAMlA~~G~vaQe~vTG~gPl~nL~~hladP~~~n~~~~~~  248 (305)
                      +++.+++++++++|+|||||||||||||+||++||++||++|++||++|++||+|+||+++++
T Consensus       151 lg~~~~~e~~~~~k~kElkNGRLAMlAi~G~~~qe~vtG~gp~~nl~~h~~~P~~~n~~~~~~  213 (218)
T d1rwta_         151 LGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWNFAT  213 (218)
T ss_dssp             TCTTCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSCHHHHHHHHHHCTTTSSGGGGTT
T ss_pred             cccCCCHHHHHHHHHHHHHHhHHHHHHHHHHHHhhhhcCCCHHHHHHHHhcCchhhhHHHHHh
Confidence            999999999999999999999999999999999999999999999999999999999997775
>d1rwta_ f.43.1.1 (A:) Chlorophyll a-b binding protein {Spinach (Spinacia oleracea) [TaxId: 3562]} Back     information, alignment and structure