Citrus Sinensis ID: 021933

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-----
MWGAPAEPADSYYEVRPECTDVPKTRFKIKPGKTLSARKWQAAFTPEGQLDIGKTLSRIHRGGIHPSIRGEVWEFLLGCYEPKSTFDEREEIRQRRRLQYSAWKEECHQIFPVVGSGKFITAPVVTEDGQPIQDPLVLQETNSGISASSSKMVKELLSHGPLDKKVIQWMLTLHQIGLDVIRTDRTLVFYEKQENLSKLWDILAVYAWVDRDVGYCQGMSDLCSPMIILLENEADAFWCFERLMRRLRGNFRCTESSVGVETQLSNLASITQRHWAEVTISLRSECLWSCSVENFHFVTHYISGR
ccccccccccccccccccccccccccccccccccccHHHHHHHccccccccHHHHHHHHHcccccccHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHHHHccccccccEEEcccccccccccccccHHHcccccccccccHHHHHcccccccHHHHHHHHHHHHHHcccccccccccccccccccHHHHHHHHHHHHHHccccccccccHHHHHHHHHHcccHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccEEEEccccc
ccccccccccccEEccccccccccccccccccccccHHHHHHHccccccEcHHHHHHHHHcccccHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHHHcccccccccEEEccEEcccccccccccHHHHHHHHccccccccccccccccHHHHHHHHHHHHHHHccccccccccccccccccHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHcHHHHHHHHHccHHccccccEEEEEHHcccc
mwgapaepadsyyevrpectdvpktrfkikpgktlsARKWQaaftpegqldigktlsrihrggihpsirGEVWEFLLgcyepkstfdEREEIRQRRRLQYSAWKEEChqifpvvgsgkfitapvvtedgqpiqdplvlqetnsgisasSSKMVKELLSHGPLDKKVIQWMLTLHQIGldvirtdrtLVFYEKQENLSKLWDILAVYAWVDrdvgycqgmsdlcsPMIILLENEADAFWCFERLMRRLRgnfrctessvgveTQLSNLASITQRHWAEVTISLRSEClwscsvenfHFVTHYISGR
mwgapaepadsyyevrpectdvpktrfkikpgktlsarkwqaaftpegqldigktLSRIHRGGIHPSIRGEVWEFLLGCYEPkstfdereeIRQRRRLQYSAWKEECHQIFPVVGSGKFITAPVVTEDGQPIQDPLVLQETNSGISASSSKMVKELLSHGPLDKKVIQWMLTLHQIGLDVIRTDRTLVFYEKQENLSKLWDILAVYAWVDRDVGYCQGMSDLCSPMIILLENEADAFWCFERLMRRLRGNFRCTESSVGVETQLSNLASITQRHWAEVTISLRSECLWSCSVENFHFVTHYISGR
MWGAPAEPADSYYEVRPECTDVPKTRFKIKPGKTLSARKWQAAFTPEGQLDIGKTLSRIHRGGIHPSIRGEVWEFLLGCYEPKSTFDereeirqrrrLQYSAWKEECHQIFPVVGSGKFITAPVVTEDGQPIQDPLVLQETNSGISASSSKMVKELLSHGPLDKKVIQWMLTLHQIGLDVIRTDRTLVFYEKQENLSKLWDILAVYAWVDRDVGYCQGMSDLCSPMIILLENEADAFWCFERLMRRLRGNFRCTESSVGVETQLSNLASITQRHWAEVTISLRSECLWSCSVENFHFVTHYISGR
******************CTDVPKTRFKIKPGKTLSARKWQAAFTPEGQLDIGKTLSRIHRGGIHPSIRGEVWEFLLGCYEPKSTFDEREEIRQRRRLQYSAWKEECHQIFPVVGSGKFITAPVVTED***************************LLSHGPLDKKVIQWMLTLHQIGLDVIRTDRTLVFYEKQENLSKLWDILAVYAWVDRDVGYCQGMSDLCSPMIILLENEADAFWCFERLMRRLRGNFRCTESSVGVETQLSNLASITQRHWAEVTISLRSECLWSCSVENFHFVTHYI***
**************************************KWQAAFTPEGQLDIGKTLSRIHRGGIHPSIRGEVWEFLLGCYEPKSTFDEREEIRQRRRLQYSAWKEECHQIFPVVGSGKFITAPVVTEDGQPIQDPLVLQETNSGISASSSKMVKELLSHGPLDKKVIQWMLTLHQIGLDVIRTDRTLVFYEKQENLSKLWDILAVYAWVDRDVGYCQGMSDLCSPMIILLENEADAFWCFERLMRRLRGNFRCTESSVGVETQLSNLASITQRHWAEVTISLRSECLWSCSVENFHFVTHYISGR
***********YYEVRPECTDVPKTRFKIKPGKTLSARKWQAAFTPEGQLDIGKTLSRIHRGGIHPSIRGEVWEFLLGCYEPKSTFDEREEIRQRRRLQYSAWKEECHQIFPVVGSGKFITAPVVTEDGQPIQDPLVLQETNSGISASSSKMVKELLSHGPLDKKVIQWMLTLHQIGLDVIRTDRTLVFYEKQENLSKLWDILAVYAWVDRDVGYCQGMSDLCSPMIILLENEADAFWCFERLMRRLRGNFRCTESSVGVETQLSNLASITQRHWAEVTISLRSECLWSCSVENFHFVTHYISGR
***********YY*****CTDV*********GKTLSARKWQAAFTPEGQLDIGKTLSRIHRGGIHPSIRGEVWEFLLGCYEPKSTFDEREEIRQRRRLQYSAWKEECHQIFPVVGSGKFITAPVVTEDGQPIQDPLVLQETNSGI**************GPLDKKVIQWMLTLHQIGLDVIRTDRTLVFYEKQENLSKLWDILAVYAWVDRDVGYCQGMSDLCSPMIILLENEADAFWCFERLMRRLRGNFRCTESSVGVETQLSNLASITQRHWAEVTISLRSECLWSCSVENFHFVTHYISGR
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MWGAPAEPADSYYEVRPECTDVPKTRFKIKPGKTLSARKWQAAFTPEGQLDIGKTLSRIHRGGIHPSIRGEVWEFLLGCYEPKSTFDEREEIRQRRRLQYSAWKEECHQIFPVVGSGKFITAPVVTEDGQPIQDPLVLQETNSGISASSSKMVKELLSHGPLDKKVIQWMLTLHQIGLDVIRTDRTLVFYEKQENLSKLWDILAVYAWVDRDVGYCQGMSDLCSPMIILLENEADAFWCFERLMRRLRGNFRCTESSVGVETQLSNLASITQRHWAEVTISLRSECLWSCSVENFHFVTHYISGR
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query305 2.2.26 [Sep-21-2011]
Q9CXF4 671 TBC1 domain family member yes no 0.586 0.266 0.321 2e-22
Q8TC07 691 TBC1 domain family member yes no 0.609 0.269 0.313 1e-21
Q9HA65 648 TBC1 domain family member no no 0.606 0.285 0.288 4e-19
Q8BYH7 645 TBC1 domain family member no no 0.606 0.286 0.296 7e-19
A1A5B6 742 TBC1 domain family member no no 0.557 0.229 0.307 7e-16
Q8TBP0 767 TBC1 domain family member no no 0.534 0.212 0.300 1e-15
Q80U121005 Small G protein signaling no no 0.321 0.097 0.392 1e-14
O431471006 Small G protein signaling no no 0.321 0.097 0.392 1e-14
Q6FWI1 745 GTPase-activating protein yes no 0.616 0.252 0.267 1e-14
Q8BPQ71093 Small G protein signaling no no 0.327 0.091 0.384 2e-14
>sp|Q9CXF4|TBC15_MOUSE TBC1 domain family member 15 OS=Mus musculus GN=Tbc1d15 PE=1 SV=1 Back     alignment and function desciption
 Score =  106 bits (265), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 79/246 (32%), Positives = 115/246 (46%), Gaps = 67/246 (27%)

Query: 35  LSARKWQAAFTPEGQLDIGKTLS-RIHRGGIHPSIRGEVWEFLLGCYEPKSTFDEREEIR 93
           +S  +W  +  PEG+L   +++  +I RGG+  S+R + W+FLLG +   ST +ER +++
Sbjct: 300 VSLEEWNKSLDPEGRLVAVESMKQKIFRGGLSHSLRKQAWKFLLGYFPWDSTKEERTQLQ 359

Query: 94  Q-------RRRLQYSAWKEECHQIFPVVGSGKFITAPVVTEDGQPIQDPLVLQETNSGIS 146
           +       R +LQ   WK                                        +S
Sbjct: 360 KQKTDEYFRMKLQ---WK---------------------------------------SVS 377

Query: 147 ASSSKMVKELLSHGPLDKKVIQWMLTLHQIGLDVIRTDRTLVFYEKQEN--LSKLWDILA 204
            +  K    L  +  L +K             DV RTDRT  FYE Q+N  L  L DIL 
Sbjct: 378 EAQEKRNSRLRDYRSLIEK-------------DVNRTDRTNKFYEGQDNPGLILLHDILM 424

Query: 205 VYAWVDRDVGYCQGMSDLCSPMIILLENEADAFWCFERLMRRLRGNFRCTESSVGVETQL 264
            Y   D D+GY QGMSDL SP++ ++ENE DAFWCF   M ++  NF   E   G++TQL
Sbjct: 425 TYCMYDFDLGYVQGMSDLLSPLLYVMENEVDAFWCFASYMDQMHQNFE--EQMQGMKTQL 482

Query: 265 SNLASI 270
             L+++
Sbjct: 483 IQLSTL 488
Acts as a GTPase activating protein for RAB7A. Does not act on RAB4, RAB5 or RAB6.
Mus musculus (taxid: 10090)
>sp|Q8TC07|TBC15_HUMAN TBC1 domain family member 15 OS=Homo sapiens GN=TBC1D15 PE=1 SV=2 Back     alignment and function description
>sp|Q9HA65|TBC17_HUMAN TBC1 domain family member 17 OS=Homo sapiens GN=TBC1D17 PE=1 SV=2 Back     alignment and function description
>sp|Q8BYH7|TBC17_MOUSE TBC1 domain family member 17 OS=Mus musculus GN=Tbc1d17 PE=2 SV=2 Back     alignment and function description
>sp|A1A5B6|TBC25_MOUSE TBC1 domain family member 25 OS=Mus musculus GN=Tbc1d25 PE=1 SV=1 Back     alignment and function description
>sp|Q8TBP0|TBC16_HUMAN TBC1 domain family member 16 OS=Homo sapiens GN=TBC1D16 PE=2 SV=1 Back     alignment and function description
>sp|Q80U12|SGSM2_MOUSE Small G protein signaling modulator 2 OS=Mus musculus GN=Sgsm2 PE=2 SV=2 Back     alignment and function description
>sp|O43147|SGSM2_HUMAN Small G protein signaling modulator 2 OS=Homo sapiens GN=SGSM2 PE=1 SV=4 Back     alignment and function description
>sp|Q6FWI1|GYP7_CANGA GTPase-activating protein GYP7 OS=Candida glabrata (strain ATCC 2001 / CBS 138 / JCM 3761 / NBRC 0622 / NRRL Y-65) GN=GYP7 PE=3 SV=1 Back     alignment and function description
>sp|Q8BPQ7|SGSM1_MOUSE Small G protein signaling modulator 1 OS=Mus musculus GN=Sgsm1 PE=2 SV=2 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query305
224117458 467 predicted protein [Populus trichocarpa] 0.891 0.582 0.783 1e-128
224126335 488 predicted protein [Populus trichocarpa] 0.891 0.557 0.802 1e-128
356543936 422 PREDICTED: TBC1 domain family member 15- 0.852 0.616 0.783 1e-127
356549835 422 PREDICTED: TBC1 domain family member 15- 0.852 0.616 0.772 1e-125
449470425 444 PREDICTED: GTPase-activating protein gyp 0.888 0.610 0.757 1e-124
297796351 438 hypothetical protein ARALYDRAFT_495559 [ 0.885 0.616 0.816 1e-122
9758258 435 unnamed protein product [Arabidopsis tha 0.885 0.620 0.816 1e-122
79537388 432 RabGAP/TBC domain-containing protein [Ar 0.885 0.625 0.816 1e-122
79325285 433 RabGAP/TBC domain-containing protein [Ar 0.891 0.628 0.797 1e-121
297803390 436 rab GTPase activator [Arabidopsis lyrata 0.891 0.623 0.790 1e-121
>gi|224117458|ref|XP_002317579.1| predicted protein [Populus trichocarpa] gi|222860644|gb|EEE98191.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
 Score =  464 bits (1194), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 232/296 (78%), Positives = 252/296 (85%), Gaps = 24/296 (8%)

Query: 1   MWGAPAEPADSYYEVRPECTDVPKTRFKIKPGKTLSARKWQAAFTPEGQLDIGKTLSRIH 60
           MW  P +PADSYY+VRPECTDVPK++FKIK G+TLS+RKWQAAFTPEG LDI KTLSRI+
Sbjct: 1   MWRDPGQPADSYYQVRPECTDVPKSKFKIKAGRTLSSRKWQAAFTPEGYLDISKTLSRIY 60

Query: 61  RGGIHPSIRGEVWEFLLGCYEPKSTFDEREEIRQRRRLQYSAWKEECHQIFPVVGSGKFI 120
           RGGIHPSIRGEVWEFLLGCY+PKSTFDER++IRQRRR+QY  WKEEC QIFPVVGSGKFI
Sbjct: 61  RGGIHPSIRGEVWEFLLGCYDPKSTFDERDQIRQRRRVQYVRWKEECRQIFPVVGSGKFI 120

Query: 121 TAPVVTEDGQPIQDPLVLQETN------------------------SGISASSSKMVKEL 156
           TAPV+TEDGQPIQ+PLV+ ETN                        S  +AS S+MVKEL
Sbjct: 121 TAPVITEDGQPIQEPLVILETNQDRGPSQDGNSAEIGSSHAYATNQSRTNASCSEMVKEL 180

Query: 157 LSHGPLDKKVIQWMLTLHQIGLDVIRTDRTLVFYEKQENLSKLWDILAVYAWVDRDVGYC 216
            SHGPLD KVIQWMLTLHQIGLDV RTDRTLVFYEKQENLSKLWDILAVYAW+D DVGYC
Sbjct: 181 TSHGPLDHKVIQWMLTLHQIGLDVHRTDRTLVFYEKQENLSKLWDILAVYAWIDTDVGYC 240

Query: 217 QGMSDLCSPMIILLENEADAFWCFERLMRRLRGNFRCTESSVGVETQLSNLASITQ 272
           QGMSDLCSPMI+LLE+EADAFWCFERLMRRLRGNFRCT  +VGVETQLSNLA ITQ
Sbjct: 241 QGMSDLCSPMIMLLEDEADAFWCFERLMRRLRGNFRCTGRTVGVETQLSNLAEITQ 296

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|224126335|ref|XP_002319813.1| predicted protein [Populus trichocarpa] gi|222858189|gb|EEE95736.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|356543936|ref|XP_003540414.1| PREDICTED: TBC1 domain family member 15-like [Glycine max] Back     alignment and taxonomy information
>gi|356549835|ref|XP_003543296.1| PREDICTED: TBC1 domain family member 15-like [Glycine max] Back     alignment and taxonomy information
>gi|449470425|ref|XP_004152917.1| PREDICTED: GTPase-activating protein gyp7-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|297796351|ref|XP_002866060.1| hypothetical protein ARALYDRAFT_495559 [Arabidopsis lyrata subsp. lyrata] gi|297311895|gb|EFH42319.1| hypothetical protein ARALYDRAFT_495559 [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information
>gi|9758258|dbj|BAB08757.1| unnamed protein product [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|79537388|ref|NP_200289.2| RabGAP/TBC domain-containing protein [Arabidopsis thaliana] gi|110742146|dbj|BAE99001.1| hypothetical protein [Arabidopsis thaliana] gi|332009157|gb|AED96540.1| RabGAP/TBC domain-containing protein [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|79325285|ref|NP_001031730.1| RabGAP/TBC domain-containing protein [Arabidopsis thaliana] gi|332659901|gb|AEE85301.1| RabGAP/TBC domain-containing protein [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|297803390|ref|XP_002869579.1| rab GTPase activator [Arabidopsis lyrata subsp. lyrata] gi|297315415|gb|EFH45838.1| rab GTPase activator [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query305
TAIR|locus:2160145 432 AT5G54780 [Arabidopsis thalian 0.885 0.625 0.783 7.1e-116
TAIR|locus:2136442 436 AT4G27100 [Arabidopsis thalian 0.891 0.623 0.764 8.2e-115
TAIR|locus:2038922 425 AT2G20440 [Arabidopsis thalian 0.842 0.604 0.568 1.1e-80
TAIR|locus:2121353 424 AT4G28550 [Arabidopsis thalian 0.842 0.606 0.568 2.2e-80
TAIR|locus:2097573 720 AT3G59570 [Arabidopsis thalian 0.357 0.151 0.563 2.4e-43
TAIR|locus:2058228 745 AT2G43490 [Arabidopsis thalian 0.357 0.146 0.563 4.4e-43
MGI|MGI:1913937 671 Tbc1d15 "TBC1 domain family, m 0.295 0.134 0.510 6.6e-25
UNIPROTKB|A8K8E1 445 TBC1D15 "TBC1 domain family, m 0.295 0.202 0.510 3.7e-24
TAIR|locus:2165710549 AT5G41940 [Arabidopsis thalian 0.236 0.131 0.486 5.9e-24
UNIPROTKB|F1LPD8 670 Tbc1d15 "Protein Tbc1d15" [Rat 0.295 0.134 0.510 7.3e-24
TAIR|locus:2160145 AT5G54780 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1142 (407.1 bits), Expect = 7.1e-116, P = 7.1e-116
 Identities = 213/272 (78%), Positives = 235/272 (86%)

Query:     1 MWGAPAEPADSYYEVRPECTDVPKTRFKIKPGKTLSARKWQAAFTPEGQLDIGKTLSRIH 60
             MWGA AEPADSYY +RPECTDVP T+FKIKPGKTLS RKWQAAFT EG LDIGKTLSRI 
Sbjct:     1 MWGAAAEPADSYYLIRPECTDVPNTKFKIKPGKTLSVRKWQAAFTTEGFLDIGKTLSRIQ 60

Query:    61 RGGIHPSIRGEVWEFLLGCYEPKSTFDXXXXXXXXXXLQYSAWKEECHQIFPVVGSGKFI 120
             RGGIHPSIRGEVWEFLLGCY+PKSTF+          LQY++WKEEC Q+FPV+GSG FI
Sbjct:    61 RGGIHPSIRGEVWEFLLGCYDPKSTFEEREQIRQRRRLQYASWKEECKQMFPVIGSGGFI 120

Query:   121 TAPVVTEDGQPIQDPLVLQETNSGISASSSKMVKELLSHGPLDKKVIQWMLTLHQIGLDV 180
             TAPV+T  G+PI DP+VLQETN G  A+ S   K+L S GPLD+KVIQW+LTLHQIGLDV
Sbjct:   121 TAPVITNKGEPIYDPIVLQETNLG--ANGSDFFKDLASRGPLDQKVIQWLLTLHQIGLDV 178

Query:   181 IRTDRTLVFYEKQENLSKLWDILAVYAWVDRDVGYCQGMSDLCSPMIILLENEADAFWCF 240
              RTDRTLVFYEK+ENLSKLWDILA+YAW+D DVGYCQGMSDLCSPMI+LLE+EADAFWCF
Sbjct:   179 NRTDRTLVFYEKKENLSKLWDILALYAWIDNDVGYCQGMSDLCSPMIMLLEDEADAFWCF 238

Query:   241 ERLMRRLRGNFRCTESSVGVETQLSNLASITQ 272
             ERLMRRLRGNFR T  SVGVE QL++LASITQ
Sbjct:   239 ERLMRRLRGNFRDTGRSVGVEAQLTHLASITQ 270
GO:0005097 "Rab GTPase activator activity" evidence=IEA
GO:0005622 "intracellular" evidence=IEA
GO:0005634 "nucleus" evidence=ISM
GO:0032313 "regulation of Rab GTPase activity" evidence=IEA
GO:0005739 "mitochondrion" evidence=IDA
TAIR|locus:2136442 AT4G27100 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2038922 AT2G20440 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2121353 AT4G28550 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2097573 AT3G59570 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2058228 AT2G43490 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
MGI|MGI:1913937 Tbc1d15 "TBC1 domain family, member 15" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
UNIPROTKB|A8K8E1 TBC1D15 "TBC1 domain family, member 15, isoform CRA_d" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
TAIR|locus:2165710 AT5G41940 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
UNIPROTKB|F1LPD8 Tbc1d15 "Protein Tbc1d15" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
eugene3.00111109
SubName- Full=Putative uncharacterized protein; (467 aa)
(Populus trichocarpa)
Predicted Functional Partners:
 
Sorry, there are no predicted associations at the current settings.
 

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query305
smart00164216 smart00164, TBC, Domain in Tre-2, BUB2p, and Cdc16 6e-23
pfam00566206 pfam00566, RabGAP-TBC, Rab-GTPase-TBC domain 2e-22
COG5210 496 COG5210, COG5210, GTPase-activating protein [Gener 4e-17
>gnl|CDD|214540 smart00164, TBC, Domain in Tre-2, BUB2p, and Cdc16p Back     alignment and domain information 
 Score = 93.9 bits (234), Expect = 6e-23
 Identities = 41/122 (33%), Positives = 62/122 (50%), Gaps = 8/122 (6%)

Query: 155 ELLSHGPLDKKVIQWMLTLHQIGLDVIRTDRTLVFYEKQEN--LSKLWDILAVYAWVDRD 212
            LL     D K I      HQI  D+ RT     F++ +E      L  +L  YA  + +
Sbjct: 34  RLLKETAPDDKSIV-----HQIEKDLRRTFPEHSFFQDKEGPGQESLRRVLKAYALYNPE 88

Query: 213 VGYCQGMSDLCSPMIILLENEADAFWCFERLMRRLRGNFRCTESSVGVETQLSNLASITQ 272
           VGYCQGM+ L +P+++++E+E DAFWC  +LM R   NF       G++  L  L  + +
Sbjct: 89  VGYCQGMNFLAAPLLLVMEDEEDAFWCLVKLMERYGPNFY-LPDMSGLQLDLLQLDRLVK 147

Query: 273 RH 274
            +
Sbjct: 148 EY 149

Probable Rab-GAPs. Widespread domain present in Gyp6 and Gyp7, thereby giving rise to the notion that it performs a GTP-activator activity on Rab-like GTPases. Length = 216
>gnl|CDD|215997 pfam00566, RabGAP-TBC, Rab-GTPase-TBC domain Back     alignment and domain information
>gnl|CDD|227535 COG5210, COG5210, GTPase-activating protein [General function prediction only] Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 305
KOG4567370 consensus GTPase-activating protein [General funct 100.0
KOG2058 436 consensus Ypt/Rab GTPase activating protein [Intra 100.0
smart00164199 TBC Domain in Tre-2, BUB2p, and Cdc16p. Probable R 100.0
KOG2224 781 consensus Uncharacterized conserved protein, conta 100.0
KOG2197 488 consensus Ypt/Rab-specific GTPase-activating prote 100.0
KOG1092484 consensus Ypt/Rab-specific GTPase-activating prote 99.97
COG5210 496 GTPase-activating protein [General function predic 99.97
KOG2223586 consensus Uncharacterized conserved protein, conta 99.96
PF00566214 RabGAP-TBC: Rab-GTPase-TBC domain; InterPro: IPR00 99.95
KOG2222 848 consensus Uncharacterized conserved protein, conta 99.92
KOG4347 671 consensus GTPase-activating protein VRP [General f 99.92
KOG2221267 consensus PDZ-domain interacting protein EPI64, co 99.9
KOG4436 948 consensus Predicted GTPase activator NB4S/EVI5 (co 99.86
KOG1091 625 consensus Ypt/Rab-specific GTPase-activating prote 99.84
KOG1102397 consensus Rab6 GTPase activator GAPCenA and relate 99.81
KOG1093 725 consensus Predicted protein kinase (contains TBC a 99.8
KOG2595 395 consensus Predicted GTPase activator protein [Sign 99.6
KOG4436 948 consensus Predicted GTPase activator NB4S/EVI5 (co 99.45
KOG1648813 consensus Uncharacterized conserved protein, conta 99.35
KOG3636 669 consensus Uncharacterized conserved protein, conta 97.58
KOG2224 781 consensus Uncharacterized conserved protein, conta 95.81
KOG2801 559 consensus Probable Rab-GAPs [Intracellular traffic 92.01
KOG2197488 consensus Ypt/Rab-specific GTPase-activating prote 85.54
>KOG4567 consensus GTPase-activating protein [General function prediction only] Back     alignment and domain information 
Probab=100.00  E-value=4e-36  Score=262.38  Aligned_cols=237  Identities=26%  Similarity=0.371  Sum_probs=182.2

Q ss_pred             HHHhhcCC-CCCCCHHHHHHHHHhCCCC--CCchHHHHHHHhCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHhhccccC
Q 021933           39 KWQAAFTP-EGQLDIGKTLSRIHRGGIH--PSIRGEVWEFLLGCYEPKSTFDEREEIRQRRRLQYSAWKEECHQIFPVVG  115 (305)
Q Consensus        39 ~W~~~~~~-~~~i~~~~~~~~~~~~GIp--~~lR~~vW~~LLg~~~~~~~~~~~~~~~~~~~~~Y~~l~~~~~~~~~~~~  115 (305)
                      ..+..+.. +..+|..+ ++.++..|+|  .++|+.+|++|||++|++.+.|+  ..+.++|+.|...+.+...   .++
T Consensus        11 ~~edvl~~~~~~id~ke-lr~~~~~g~p~~~~lR~~~WkllL~Yl~~er~~w~--s~La~~R~~Y~q~i~e~v~---epg   84 (370)
T KOG4567|consen   11 SIEDVLNPADDTIDLKE-LRKLCFYGVPDDASLRPLVWKLLLGYLPPERSKWT--SFLAKKRSLYKQFIEEIVD---EPG   84 (370)
T ss_pred             hHHHhhccccchhhHHH-HHHHhhcCCCCccchhHhHHHHHHhhcChhhhhhH--HHHHHHHHHHHHHHHHhcc---Ccc
Confidence            44445544 34478877 8888999999  78999999999999999988775  6778899999988876432   121


Q ss_pred             CCccccCCcccCCCCcCCCccccccCCCCCCCcchhHHHhhhcCCCchhHHHHHHHHHHHHhhhhcccCCCchhccCc--
Q 021933          116 SGKFITAPVVTEDGQPIQDPLVLQETNSGISASSSKMVKELLSHGPLDKKVIQWMLTLHQIGLDVIRTDRTLVFYEKQ--  193 (305)
Q Consensus       116 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~kDv~RT~~~~~~f~~~--  193 (305)
                      . ++....+..++ +.-+.|.           +.+..        +.|..+.+..+...||++||.||.|+..+|+..  
T Consensus        85 ~-~~~~~~v~~~D-~~~dhPl-----------s~~~~--------sdwn~ff~d~e~l~QIdrDvrr~~pdi~ff~~~~~  143 (370)
T KOG4567|consen   85 K-KDNSKKVDSND-TDEDHPL-----------SLGPT--------SDWNTFFKDCEVLLQIDRDVRRTHPDISFFQLASS  143 (370)
T ss_pred             c-cccccccccCc-ccccCCC-----------CCCch--------hhHHHHhhhhHHHHHHHHHHHHhCcchHhhhhccc
Confidence            1 00000000011 0000011           11111        237788888899999999999999999999862  


Q ss_pred             -c------------------------hHHHHHHHHHHHHhhCCCCCCCcChhhHHHHHHhccc----------ChHHHHH
Q 021933          194 -E------------------------NLSKLWDILAVYAWVDRDVGYCQGMSDLCSPMIILLE----------NEADAFW  238 (305)
Q Consensus       194 -~------------------------~~~~L~~IL~~y~~~~p~igY~QGM~~l~a~ll~v~~----------~E~daF~  238 (305)
                       +                        +.....|||+.||..||.||||||||+|+|||++||.          .|+|||+
T Consensus       144 ~p~~~~~~~~~~i~~~q~~~~n~~gl~~~~~erilfiyAKLNpGi~YVQGMNEIlaPiYYVfa~Dpd~e~~~~aEaDaFF  223 (370)
T KOG4567|consen  144 YPCRQGMDSRRRINASQEAGRNRLGLTRFAAERILFIYAKLNPGIGYVQGMNEILAPIYYVFANDPDEENRAYAEADAFF  223 (370)
T ss_pred             cccccchhhHhhhhhhhHhhhcccchhhhHHHHHHHHHhhcCCcchHHhhhHHHhhhhheeeccCCchhhHHhhhhhHHH
Confidence             1                        1234578999999999999999999999999999995          4999999


Q ss_pred             HHHHHHHHhhhcccCC--CChhhHHHHHHHHHHHHHHhhHHHHHHHHhCCCCccCCChHHHHHHHh
Q 021933          239 CFERLMRRLRGNFRCT--ESSVGVETQLSNLASITQRHWAEVTISLRSECLWSCSVENFHFVTHYI  302 (305)
Q Consensus       239 ~f~~Lm~~~~~~f~~~--~~~~gi~~~l~~l~~ll~~~dP~L~~hl~~~~i~~~~~~~~~f~~~~~  302 (305)
                      ||+.||..++++|..+  ++.-||...+..+.++|+..|-+||.||+..+|....+.+.|+..++.
T Consensus       224 CF~~LMseirDnf~k~LDdS~~GI~~~Msr~~~~lk~~D~EL~~~L~~~~i~PqfyaFRWitLLLs  289 (370)
T KOG4567|consen  224 CFTQLMSEIRDNFIKTLDDSVGGIHFLMSRLSELLKKHDEELWRHLEEKEIHPQFYAFRWITLLLS  289 (370)
T ss_pred             HHHHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHhhHHHHHHHHhcCCCccchhHHHHHHHHh
Confidence            9999999999999864  566789999999999999999999999999999999888888877764

>KOG2058 consensus Ypt/Rab GTPase activating protein [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>smart00164 TBC Domain in Tre-2, BUB2p, and Cdc16p Back     alignment and domain information
>KOG2224 consensus Uncharacterized conserved protein, contains TBC domain [Signal transduction mechanisms; General function prediction only] Back     alignment and domain information
>KOG2197 consensus Ypt/Rab-specific GTPase-activating protein GYP7 and related proteins [Signal transduction mechanisms] Back     alignment and domain information
>KOG1092 consensus Ypt/Rab-specific GTPase-activating protein GYP1 [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>COG5210 GTPase-activating protein [General function prediction only] Back     alignment and domain information
>KOG2223 consensus Uncharacterized conserved protein, contains TBC domain [Signal transduction mechanisms; General function prediction only] Back     alignment and domain information
>PF00566 RabGAP-TBC: Rab-GTPase-TBC domain; InterPro: IPR000195 Identification of a TBC domain in GYP6_YEAST and GYP7_YEAST, which are GTPase activator proteins of yeast Ypt6 and Ypt7, imply that these domains are GTPase activator proteins of Rab-like small GTPases [] Back     alignment and domain information
>KOG2222 consensus Uncharacterized conserved protein, contains TBC, SH3 and RUN domains [Signal transduction mechanisms; General function prediction only] Back     alignment and domain information
>KOG4347 consensus GTPase-activating protein VRP [General function prediction only] Back     alignment and domain information
>KOG2221 consensus PDZ-domain interacting protein EPI64, contains TBC domain [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG4436 consensus Predicted GTPase activator NB4S/EVI5 (contains TBC domain)/Calmodulin-binding protein Pollux (contains PTB and TBC domains) [General function prediction only] Back     alignment and domain information
>KOG1091 consensus Ypt/Rab-specific GTPase-activating protein GYP6 [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG1102 consensus Rab6 GTPase activator GAPCenA and related TBC domain proteins [General function prediction only] Back     alignment and domain information
>KOG1093 consensus Predicted protein kinase (contains TBC and RHOD domains) [General function prediction only] Back     alignment and domain information
>KOG2595 consensus Predicted GTPase activator protein [Signal transduction mechanisms] Back     alignment and domain information
>KOG4436 consensus Predicted GTPase activator NB4S/EVI5 (contains TBC domain)/Calmodulin-binding protein Pollux (contains PTB and TBC domains) [General function prediction only] Back     alignment and domain information
>KOG1648 consensus Uncharacterized conserved protein, contains RUN, BRK and TBC domains [General function prediction only] Back     alignment and domain information
>KOG3636 consensus Uncharacterized conserved protein, contains TBC and Rhodanese domains [General function prediction only] Back     alignment and domain information
>KOG2224 consensus Uncharacterized conserved protein, contains TBC domain [Signal transduction mechanisms; General function prediction only] Back     alignment and domain information
>KOG2801 consensus Probable Rab-GAPs [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG2197 consensus Ypt/Rab-specific GTPase-activating protein GYP7 and related proteins [Signal transduction mechanisms] Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query305
1fkm_A 396 Crystal Structure Of The YptRAB-Gap Domain Of Gyp1p 4e-06
2g77_A 410 Crystal Structure Of Gyp1 Tbc Domain In Complex Wit 5e-06
3qye_A331 Crystal Structure Of Human Tbc1d1 Rabgap Domain Len 5e-05
3qyb_A301 X-Ray Crystal Structure Of Human Tbc1d4 (As160) Rab 3e-04
3dzx_A346 Crystal Structure Of The Rabgap Domain Of Human Tbc 3e-04
>pdb|1FKM|A Chain A, Crystal Structure Of The YptRAB-Gap Domain Of Gyp1p Length = 396 Back     alignment and structure 
Iteration: 1

 Score = 48.5 bits (114), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 34/142 (23%), Positives = 62/142 (43%), Gaps = 30/142 (21%)
Query: 172 TLHQIGLDVIRTDRTLVFYEKQENLSKLWDILAVYAWVDRDVGYCQGMSDLCSPMI---- 227
           T HQI +D+ RT+  +  Y+ +   + L  IL ++A      GY QG++DL +P      
Sbjct: 86  TWHQIEIDIPRTNPHIPLYQFKSVQNSLQRILYLWAIRHPASGYVQGINDLVTPFFETFL 145
Query: 228 ------------------------ILLENEADAFWCFERLMRRLRGNFRCTESSVGVETQ 263
                                    + + EAD FWC  +L+ ++  N+       G+  Q
Sbjct: 146 TEYLPPSQIDDVEIKDPSTYXVDEQITDLEADTFWCLTKLLEQITDNY--IHGQPGILRQ 203
Query: 264 LSNLASITQRHWAEVTISLRSE 285
           + NL+ + +R  A++    ++E
Sbjct: 204 VKNLSQLVKRIDADLYNHFQNE 225
>pdb|2G77|A Chain A, Crystal Structure Of Gyp1 Tbc Domain In Complex With Rab33 Gtpase Bound To Gdp And Alf3 Length = 410 Back     alignment and structure
>pdb|3QYE|A Chain A, Crystal Structure Of Human Tbc1d1 Rabgap Domain Length = 331 Back     alignment and structure
>pdb|3QYB|A Chain A, X-Ray Crystal Structure Of Human Tbc1d4 (As160) Rabgap Domain Length = 301 Back     alignment and structure
>pdb|3DZX|A Chain A, Crystal Structure Of The Rabgap Domain Of Human Tbc1d22b Length = 346 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query305
1fkm_A 396 Protein (GYP1P), ORF YOR070C; GAP, YPT/RAB protein 1e-27
1fkm_A 396 Protein (GYP1P), ORF YOR070C; GAP, YPT/RAB protein 5e-12
2qfz_A345 TBC1 domain family member 22A; RAB-GAP, GTPase act 6e-22
2qfz_A345 TBC1 domain family member 22A; RAB-GAP, GTPase act 5e-08
2qq8_A334 TBC1 domain family member 14; structural genomics 2e-18
3hzj_A 310 Rabgap1L, RAB GTPase-activating protein 1-like; st 2e-15
3qye_A331 TBC1 domain family member 1; rabgap, RAB, myocytes 9e-15
3qwl_A294 TBC1 domain family member 7; RAB GTPase activation 2e-09
>1fkm_A Protein (GYP1P), ORF YOR070C; GAP, YPT/RAB protein, vesicular trafficking, endocytosis, hydrolase, GTPase activation; 1.90A {Saccharomyces cerevisiae} SCOP: a.69.2.1 a.69.2.1 PDB: 2g77_A* Length = 396 Back     alignment and structure
 Score =  109 bits (274), Expect = 1e-27
 Identities = 32/140 (22%), Positives = 58/140 (41%), Gaps = 30/140 (21%)

Query: 163 DKKVIQWMLTLHQIGLDVIRTDRTLVFYEKQENLSKLWDILAVYAWVDRDVGYCQGMSDL 222
             +  + + T HQI +D+ RT+  +  Y+ +   + L  IL ++A      GY QG++DL
Sbjct: 77  SDQHSRDIPTWHQIEIDIPRTNPHIPLYQFKSVQNSLQRILYLWAIRHPASGYVQGINDL 136

Query: 223 CSPMIILL----------------------------ENEADAFWCFERLMRRLRGNFRCT 254
            +P                                 + EAD FWC  +L+ ++  N+   
Sbjct: 137 VTPFFETFLTEYLPPSQIDDVEIKDPSTYMVDEQITDLEADTFWCLTKLLEQITDNY--I 194

Query: 255 ESSVGVETQLSNLASITQRH 274
               G+  Q+ NL+ + +R 
Sbjct: 195 HGQPGILRQVKNLSQLVKRI 214
>1fkm_A Protein (GYP1P), ORF YOR070C; GAP, YPT/RAB protein, vesicular trafficking, endocytosis, hydrolase, GTPase activation; 1.90A {Saccharomyces cerevisiae} SCOP: a.69.2.1 a.69.2.1 PDB: 2g77_A* Length = 396 Back     alignment and structure
>2qfz_A TBC1 domain family member 22A; RAB-GAP, GTPase activator, structural genomics, structural genomics consortium, SGC, hydrolase activator; 2.10A {Homo sapiens} PDB: 3dzx_A Length = 345 Back     alignment and structure
>2qfz_A TBC1 domain family member 22A; RAB-GAP, GTPase activator, structural genomics, structural genomics consortium, SGC, hydrolase activator; 2.10A {Homo sapiens} PDB: 3dzx_A Length = 345 Back     alignment and structure
>2qq8_A TBC1 domain family member 14; structural genomics consortium, RAB-GAP, SGC, GTPase activation, hydrolase activator; 2.00A {Homo sapiens} Length = 334 Back     alignment and structure
>3hzj_A Rabgap1L, RAB GTPase-activating protein 1-like; structural genomics consortium, SGC, alternative splicing, GTPase activation, phosphoprotein; 2.30A {Homo sapiens} Length = 310 Back     alignment and structure
>3qye_A TBC1 domain family member 1; rabgap, RAB, myocytes, hydrolase activator; 2.20A {Homo sapiens} PDB: 3qyb_A Length = 331 Back     alignment and structure
>3qwl_A TBC1 domain family member 7; RAB GTPase activation, structural genomics consortium, TBC D SGC, hydrolase activator; 1.90A {Homo sapiens} Length = 294 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query305
1fkm_A 396 Protein (GYP1P), ORF YOR070C; GAP, YPT/RAB protein 100.0
2qfz_A345 TBC1 domain family member 22A; RAB-GAP, GTPase act 100.0
2qq8_A334 TBC1 domain family member 14; structural genomics 100.0
3qye_A331 TBC1 domain family member 1; rabgap, RAB, myocytes 100.0
3hzj_A 310 Rabgap1L, RAB GTPase-activating protein 1-like; st 100.0
4hl4_A292 TBC1 domain family member 20; rabgap, RAB1B, hydro 100.0
3qwl_A294 TBC1 domain family member 7; RAB GTPase activation 99.95
>1fkm_A Protein (GYP1P), ORF YOR070C; GAP, YPT/RAB protein, vesicular trafficking, endocytosis, hydrolase, GTPase activation; 1.90A {Saccharomyces cerevisiae} SCOP: a.69.2.1 a.69.2.1 PDB: 2g77_A* Back     alignment and structure
Probab=100.00  E-value=5.1e-42  Score=322.62  Aligned_cols=209  Identities=23%  Similarity=0.380  Sum_probs=182.1

Q ss_pred             CHHHHHhhcCCCCCCCHHHHHHHHHhCCCCCCchHHHHHHHhCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHhhccccC
Q 021933           36 SARKWQAAFTPEGQLDIGKTLSRIHRGGIHPSIRGEVWEFLLGCYEPKSTFDEREEIRQRRRLQYSAWKEECHQIFPVVG  115 (305)
Q Consensus        36 ~~~~W~~~~~~~~~i~~~~~~~~~~~~GIp~~lR~~vW~~LLg~~~~~~~~~~~~~~~~~~~~~Y~~l~~~~~~~~~~~~  115 (305)
                      ..++|.+++.+.+.+|..+ ++.++++|||+.+|+.||++|||++|.+.+  +|+..++++++.|..+++++.....   
T Consensus         7 R~~kw~~lL~~~~~~d~~~-Lr~l~~~GIP~~lR~~vW~~LLg~~~~~~~--~~~~~l~~~~~~Y~~l~~~~~~~~~---   80 (396)
T 1fkm_A            7 RISKFDNILKDKTIINQQD-LRQISWNGIPKIHRPVVWKLLIGYLPVNTK--RQEGFLQRKRKEYRDSLKHTFSDQH---   80 (396)
T ss_dssp             HHHHHHHHHSSCSBCCHHH-HHHHHTTCCCGGGHHHHHHHHTTCSCSBGG--GHHHHHHHHHHHHHHHHHHTSSSSC---
T ss_pred             HHHHHHHHHcCCCCCCHHH-HHHHHHcCCCHHHHHHHHHHHHCCCCCChh--HHHHHHHHHHHHHHHHHHHHhhccC---
Confidence            4579999999865588887 666788999999999999999999998865  4556778899999999988542000   


Q ss_pred             CCccccCCcccCCCCcCCCccccccCCCCCCCcchhHHHhhhcCCCchhHHHHHHHHHHHHhhhhcccCCCchhccCcch
Q 021933          116 SGKFITAPVVTEDGQPIQDPLVLQETNSGISASSSKMVKELLSHGPLDKKVIQWMLTLHQIGLDVIRTDRTLVFYEKQEN  195 (305)
Q Consensus       116 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~kDv~RT~~~~~~f~~~~~  195 (305)
                                                                   .      ......++|++||.||+|++++|+.+.+
T Consensus        81 ---------------------------------------------~------~~~~~~~qI~~Dv~RT~p~~~~F~~~~~  109 (396)
T 1fkm_A           81 ---------------------------------------------S------RDIPTWHQIEIDIPRTNPHIPLYQFKSV  109 (396)
T ss_dssp             ---------------------------------------------S------THHHHHHHHHHHGGGSSTTSGGGGSHHH
T ss_pred             ---------------------------------------------c------ccHHHHHHHHHHhhhhCCCcccccCchH
Confidence                                                         0      0124678999999999999999999999


Q ss_pred             HHHHHHHHHHHHhhCCCCCCCcChhhHHHHHHhccc------------------C----------hHHHHHHHHHHHHHh
Q 021933          196 LSKLWDILAVYAWVDRDVGYCQGMSDLCSPMIILLE------------------N----------EADAFWCFERLMRRL  247 (305)
Q Consensus       196 ~~~L~~IL~~y~~~~p~igY~QGM~~l~a~ll~v~~------------------~----------E~daF~~f~~Lm~~~  247 (305)
                      ++.|.|||.+|+.+||++|||||||+||||||+++.                  +          |++|||||++||+.+
T Consensus       110 ~~~L~rIL~aya~~np~iGY~QGmn~i~a~ll~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~E~daF~~f~~lm~~~  189 (396)
T 1fkm_A          110 QNSLQRILYLWAIRHPASGYVQGINDLVTPFFETFLTEYLPPSQIDDVEIKDPSTYMVDEQITDLEADTFWCLTKLLEQI  189 (396)
T ss_dssp             HHHHHHHHHHHHHHCTTTCSCTTHHHHHHHHHHHHHGGGSCGGGGGGTTTSCGGGTCCHHHHHHHHHHHHHHHHHHHGGG
T ss_pred             HHHHHHHHHHHHHHCCCCCcccCcHHHHHHHHHHHHHhhccccccccccccchhhccchhhhhhhHHHHHHHHHHHHHHH
Confidence            999999999999999999999999999999998762                  1          999999999999999


Q ss_pred             hhcccCCCChhhHHHHHHHHHHHHHHhhHHHHHHHHhCCCCccCCChHHHHHHHhh
Q 021933          248 RGNFRCTESSVGVETQLSNLASITQRHWAEVTISLRSECLWSCSVENFHFVTHYIS  303 (305)
Q Consensus       248 ~~~f~~~~~~~gi~~~l~~l~~ll~~~dP~L~~hl~~~~i~~~~~~~~~f~~~~~~  303 (305)
                      +++|..  +++|+...+.+++.||+..||+|++||++.+|....+...||+++|..
T Consensus       190 ~~~f~~--~~~~i~~~~~~l~~LL~~~dP~L~~hL~~~~i~~~~f~~rW~l~LF~~  243 (396)
T 1fkm_A          190 TDNYIH--GQPGILRQVKNLSQLVKRIDADLYNHFQNEHVEFIQFAFRWMNCLLMR  243 (396)
T ss_dssp             GGGSST--TCHHHHHHHHHHHHHHHHHCHHHHHHHHHTTCCTHHHHHHHHHTTTGG
T ss_pred             HHHHhh--cHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHh
Confidence            888875  568999999999999999999999999999999999999999999874
>2qfz_A TBC1 domain family member 22A; RAB-GAP, GTPase activator, structural genomics, structural genomics consortium, SGC, hydrolase activator; 2.10A {Homo sapiens} PDB: 3dzx_A Back     alignment and structure
>2qq8_A TBC1 domain family member 14; structural genomics consortium, RAB-GAP, SGC, GTPase activation, hydrolase activator; 2.00A {Homo sapiens} Back     alignment and structure
>3qye_A TBC1 domain family member 1; rabgap, RAB, myocytes, hydrolase activator; 2.20A {Homo sapiens} PDB: 3qyb_A Back     alignment and structure
>3hzj_A Rabgap1L, RAB GTPase-activating protein 1-like; structural genomics consortium, SGC, alternative splicing, GTPase activation, phosphoprotein; 2.30A {Homo sapiens} Back     alignment and structure
>4hl4_A TBC1 domain family member 20; rabgap, RAB1B, hydrolase activator, catalytic domain, F GTPase-activating proteins, RAB GTP-binding protein, GTP HY; 2.20A {Homo sapiens} PDB: 4hlq_A* Back     alignment and structure
>3qwl_A TBC1 domain family member 7; RAB GTPase activation, structural genomics consortium, TBC D SGC, hydrolase activator; 1.90A {Homo sapiens} Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 305
d1fkma1194 a.69.2.1 (A:249-442) Ypt/Rab-GAP domain of gyp1p { 5e-18
d1fkma1194 a.69.2.1 (A:249-442) Ypt/Rab-GAP domain of gyp1p { 2e-05
>d1fkma1 a.69.2.1 (A:249-442) Ypt/Rab-GAP domain of gyp1p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 194 Back     information, alignment and structure

class: All alpha proteins
fold: Left-handed superhelix
superfamily: Ypt/Rab-GAP domain of gyp1p
family: Ypt/Rab-GAP domain of gyp1p
domain: Ypt/Rab-GAP domain of gyp1p
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 78.4 bits (192), Expect = 5e-18
 Identities = 27/108 (25%), Positives = 46/108 (42%), Gaps = 28/108 (25%)

Query: 172 TLHQIGLDVIRTDRTLVFYEKQENLSKLWDILAVYAWVDRDVGYCQGMSDLCSPMII--- 228
           T HQI +D+ RT+  +  Y+ +   + L  IL ++A      GY QG++DL +P      
Sbjct: 85  TWHQIEIDIPRTNPHIPLYQFKSVQNSLQRILYLWAIRHPASGYVQGINDLVTPFFETFL 144

Query: 229 -------------------------LLENEADAFWCFERLMRRLRGNF 251
                                    + + EAD FWC  +L+ ++  N+
Sbjct: 145 TEYLPPSQIDDVEIKDPSTYMVDEQITDLEADTFWCLTKLLEQITDNY 192
>d1fkma1 a.69.2.1 (A:249-442) Ypt/Rab-GAP domain of gyp1p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 194 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query305
d1fkma1194 Ypt/Rab-GAP domain of gyp1p {Baker's yeast (Saccha 100.0
>d1fkma1 a.69.2.1 (A:249-442) Ypt/Rab-GAP domain of gyp1p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
class: All alpha proteins
fold: Left-handed superhelix
superfamily: Ypt/Rab-GAP domain of gyp1p
family: Ypt/Rab-GAP domain of gyp1p
domain: Ypt/Rab-GAP domain of gyp1p
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=1.7e-38  Score=268.96  Aligned_cols=159  Identities=26%  Similarity=0.446  Sum_probs=134.5

Q ss_pred             HHHHHhhcCCCCCCCHHHHHHHHHhCCCCCCchHHHHHHHhCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHhhccccCC
Q 021933           37 ARKWQAAFTPEGQLDIGKTLSRIHRGGIHPSIRGEVWEFLLGCYEPKSTFDEREEIRQRRRLQYSAWKEECHQIFPVVGS  116 (305)
Q Consensus        37 ~~~W~~~~~~~~~i~~~~~~~~~~~~GIp~~lR~~vW~~LLg~~~~~~~~~~~~~~~~~~~~~Y~~l~~~~~~~~~~~~~  116 (305)
                      .++|.+++.+.+.++..+ ++.++++|||+++|+.||++|||++|.+++.++  ....+++..|..++.......     
T Consensus         7 i~~~~~~l~~~~~i~~~~-lr~l~~~Gip~~lR~~vW~~llg~~~~~~~~~~--~~~~~~~~~y~~~~~~~~~~~-----   78 (194)
T d1fkma1           7 ISKFDNILKDKTIINQQD-LRQISWNGIPKIHRPVVWKLLIGYLPVNTKRQE--GFLQRKRKEYRDSLKHTFSDQ-----   78 (194)
T ss_dssp             HHHHHHHHSSCSBCCHHH-HHHHHTTCCCGGGHHHHHHHHTTCSCSBGGGHH--HHHHHHHHHHHHHHHHTSSSS-----
T ss_pred             HHHHHHHhcccCCCCHHH-HHHHHHcCCChHHHHHHHHHHHhhcCCchhhHH--HHHHHHhhhhhhhhhhhhhcc-----
Confidence            468999998877789877 567789999999999999999999999887654  456778888888776532100     


Q ss_pred             CccccCCcccCCCCcCCCccccccCCCCCCCcchhHHHhhhcCCCchhHHHHHHHHHHHHhhhhcccCCCchhccCcchH
Q 021933          117 GKFITAPVVTEDGQPIQDPLVLQETNSGISASSSKMVKELLSHGPLDKKVIQWMLTLHQIGLDVIRTDRTLVFYEKQENL  196 (305)
Q Consensus       117 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~kDv~RT~~~~~~f~~~~~~  196 (305)
                                                                       ........++|++||.||+|++++|+.++++
T Consensus        79 -------------------------------------------------~~~~~~~~~~I~~Dv~RT~~~~~~f~~~~~~  109 (194)
T d1fkma1          79 -------------------------------------------------HSRDIPTWHQIEIDIPRTNPHIPLYQFKSVQ  109 (194)
T ss_dssp             -------------------------------------------------CSTHHHHHHHHHHHGGGSSTTSGGGGSHHHH
T ss_pred             -------------------------------------------------cccchHHHHHHHHHHHhcCCcccccccchhH
Confidence                                                             0001246789999999999999999999999


Q ss_pred             HHHHHHHHHHHhhCCCCCCCcChhhHHHHHHhccc----------------------------ChHHHHHHHHHHHHHhh
Q 021933          197 SKLWDILAVYAWVDRDVGYCQGMSDLCSPMIILLE----------------------------NEADAFWCFERLMRRLR  248 (305)
Q Consensus       197 ~~L~~IL~~y~~~~p~igY~QGM~~l~a~ll~v~~----------------------------~E~daF~~f~~Lm~~~~  248 (305)
                      +.|+|||.+||.+||++|||||||+|||||+.++.                            .|+||||||+.||+.++
T Consensus       110 ~~L~rIL~~ya~~np~~gY~QGmn~i~a~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ead~F~~f~~lm~~i~  189 (194)
T d1fkma1         110 NSLQRILYLWAIRHPASGYVQGINDLVTPFFETFLTEYLPPSQIDDVEIKDPSTYMVDEQITDLEADTFWCLTKLLEQIT  189 (194)
T ss_dssp             HHHHHHHHHHHHHCTTTCSCTTHHHHHHHHHHHHHGGGSCGGGGGGTTTSCGGGTCCHHHHHHHHHHHHHHHHHHHGGGG
T ss_pred             HHHHHHHHHHHHHCCCCCeeecchHHHHHHHHHHhhhhhhhhhhhhhhhcchhhhhhhhhhhhHHHHHHHHHHHHHHhhh
Confidence            99999999999999999999999999999998862                            39999999999999999


Q ss_pred             hccc
Q 021933          249 GNFR  252 (305)
Q Consensus       249 ~~f~  252 (305)
                      ++|.
T Consensus       190 d~y~  193 (194)
T d1fkma1         190 DNYI  193 (194)
T ss_dssp             GGSS
T ss_pred             ccCC
Confidence            8886