Citrus Sinensis ID: 021949

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-----
Protein Sequence
MASYRALDLNLISAKHLKDVHLISKMDVYAVVSISGDHTIKKQKVKSHVDRSGGSNPTWNFPIKFTFNQSLAQQNRLTLDFKIKSDGLLGDKTVGEVIVPIKELLDSSSSSSSGDAKSMKFVTYQVRSSSGKPKGELHFSYKFSEPTVGKTHAKAGEPVTAYPAPMAAGSSSVPYAYPPPPQAGYGYPPPPPQGAAPNGAYPPQQPGYGYPPPPPQQGYGYPPPPPQQGYGYPPPPPQQGYGYPPQQPGYGYPPVKPAKKSNGGLGFGTGLLGGMLGGLLIGDIVSDAADYDGDFGGDFGGDFDF
Secondary Structure (PSIPRED)
cccccEEEEEEEEEccccccccccccccEEEEEEEccccccccEEEcccccccccccccccEEEEEEcccHHccccEEEEEEEEEcccccccEEEEEEEEcHHHHccccccccccccccEEEEEEEEccccccccEEEEEEEccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccc
Secondary Structure Prediction (SSPRO)
ccccEEEEEEEEEcccccccccccccEEEEEEEEcccccccccccccccccccccccccccEEEEEccHHHcccccEEEEEEEEEccccccccEEEEEEEHHHHcccccccccccccccEEEEEEEEcccccccEEEEEEEEEcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccc
Coil and Loop (DISEMBL)
MASYRALDLNLISAKHLKDVHLISKMDVYAVVSIsgdhtikkqkvkshvdrsggsnptwnfpikftfnQSLAQQNRLTLDfkiksdgllgdktvgEVIVPIKElldsssssssgdaksMKFVTYQVrsssgkpkgelhfsykfseptvgkthakagepvtaypapmaagsssvpyayppppqagygypppppqgaapngayppqqpgygypppppqqgygypppppqqgygypppppqqgygyppqqpgygyppvkpakksngglgfgtgllgGMLGGLLIGDivsdaadydgdfggdfggdfdf
Flexible Loop (DISEMBL)
MASYRALDLNLISAKHLKDVHLISKMDVYAVVSISgdhtikkqkvkshvdrsggsnptWNFPIKFTFNQSLAQQNRLTLDFKIKSDGLLGDKTVGEVIVPIKElldsssssssgdaksMKFVTYQVrsssgkpkgelHFSYKFSEPTVGKTHAKAGEPVTAYPAPMAAGSSSVPYAYPPPPQAGYGYPPPPPQGAAPNGAYPPQQPGYGYPPPPPQQGYGYPPPPPQQGYGYPPPPPQQGYGYPPQQPGYGYPPVKPAKKSNGGLGFGTGLLGGMLGGLLIGDIVSDAADYDGDFGGDFGGDFDF
Low Complexity Region (SEG)
MASYRALDLNLISAKHLKDVHLISKMDVYAVVSISGDHTIKKQKVKSHVDRSGGSNPTWNFPIKFTFNQSLAQQNRLTLDFKIKSDGLLGDKTVGEVIVPIKELLDsssssssGDAKSMKFVTYQVRSSSGKPKGELHFSYKFSEPTVGKTHAKAGEPVTAYPAPMAAGSSSVpyayppppqagygypppppqgaapngayppqqpgygypppppqqgygypppppqqgygypppppqqgygyppqqpgygyppVKPAKKSNgglgfgtgllggmlgglligDIVSDAADYdgdfggdfggdfdf
Disordered region (IsUnstruct)
*****ALDLNLISAKHLKDVHLISKMDVYAVVSISGDHTIK***************PTWNFPIKFTFNQSLAQQNRLTLDFKIKSDGLLGDKTVGEVIVPIKEL***************************************************************************************************************************************************************GLGFGTGLLGGMLGGLLIGDIVSDAADYDGDFGGDF******
Disordered Region (DISOPRED)
**SYRALDLNLISAKHLKDVHLISKMDVYAVVSISGDHTIKKQKVKSHVDRSGGSNPTWNFPIKFTFNQSLAQQNRLTLDFKIKSDGLLGDKTVGEVIVPIKELLDSS**********MKF********************KFSEPTVGKTHAKAGEPV***************************************************************************************************************LLGGMLGGLLIGDIVSDAADYDGDFGGDFGGDFD*
Disordered Region (DISEMBL)
MASYRALDLNLISAKHLKDVHLISKMDVYAVVSISGDH***************GSNPTWNFPIKFTFNQSLAQQNRLTLDFKIKSDGLLGDKTVGEVIVPIKELL************SMKFVTYQ********KGELHFSYKFSEPTVGKTHAKAGEPVTAYPAPMAAGSSSVPYAYPPPPQAGYGYPPPPPQGAAPNGAYPPQQPGYGYPPPPPQQGYGYPPPPPQQGYGYPPPPPQQGYGYPPQQPGYGYPPVKPAKKSNGGLGFGTGLLGGMLGGLLIGDIVSDAADYDGDFGGDFGGDFDF
Disordered Region (DISPRO)
*ASYRALDLNLISAKHLKDVHLISKMDVYAVVSISGDHT***QKVKSHVDRSGGSNPTWNFPIKFTFNQSLAQQNRLTLDFKIKSDGLLGDKTVGEVIVPIKELLDSSS******AKSMKFVTYQVRSSSGKPKGELHFSYKFSEPT*********EPVTAYPAPMAAGSSSVPYAYPPPPQAGYGYPPPPPQGAAPNGAYPPQQPGYGYPPPPPQQGYGYPPPPPQQGYGYPPPPPQQGYGYPPQQPGYGYPPVKPAKKSNGGLGFGTGLLGGMLGGLLIGDIVSDAADYDGDFGGDFGG*F*F
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
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Transmembrane Helix (MEMSAT)
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TM Helix, Signal Peptide (MEMSAT_SVM)
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TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MASYRALDLNLISAKHLKDVHLISKMDVYAVVSISGDHTIKKQKVKSHVDRSGGSNPTWNFPIKFTFNQSLAQQNRLTLDFKIKSDGLLGDKTVGEVIVPIKELLDSSSSSSSGDAKSMKFVTYQVRSSSGKPKGELHFSYKFSEPTVGKTHAKAGEPVTAYPAPMAAGSSSVPYAYPPPPQAGYGYPPPPPQGAAPNGAYPPQQPGYGYPPPPPQQGYGYPPPPPQQGYGYPPPPPQQGYGYPPQQPGYGYPPVKPAKKSNGGLGFGTGLLGGMLGGLLIGDIVSDAADYDGDFGGDFGGDFDF
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	305	2.2.26 [Sep-21-2011]
A5DP36	1440	Actin cytoskeleton-regula	N/A	no	0.213	0.045	0.514	1e-06
Q4PHA8	1076	Vacuolar protein-sorting	N/A	no	0.222	0.063	0.430	0.0001

>sp|A5DP36|PAN1_PICGU Actin cytoskeleton-regulatory complex protein PAN1 OS=Meyerozyma guilliermondii (strain ATCC 6260 / CBS 566 / DSM 6381 / JCM 1539 / NBRC 10279 / NRRL Y-324) GN=PAN1 PE=3 SV=2

 Score = 54.3 bits (129), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 35/68 (51%), Positives = 37/68 (54%), Gaps = 3/68 (4%)

Query: 186 GYPPPPPQGAAPNGAYPPQQPGYGYPPPPPQQGYGYPPPPPQQGYGYPPPPPQQGYGYPP 245
           GY PP  Q     G  P +Q   GY PP  QQG GY PP  QQG GY PP  QQG GY P
Sbjct: 326 GYQPPLQQQGT--GYQPLKQQNTGYQPPLQQQGTGYQPPLQQQGTGYQPPLQQQGTGYQP 383

Query: 246 -QQPGYGY 252
            Q  G G+
Sbjct: 384 LQSQGTGF 391

Component of the PAN1 actin cytoskeleton-regulatory complex required for the internalization of endosomes during actin-coupled endocytosis. The complex links the site of endocytosis to the cell membrane-associated actin cytoskeleton. Mediates uptake of external molecules and vacuolar degradation of plasma membrane proteins. Plays a role in the proper organization of the cell membrane-associated actin cytoskeleton and promotes its destabilization.
Meyerozyma guilliermondii (strain ATCC 6260 / CBS 566 / DSM 6381 / JCM 1539 / NBRC 10279 / NRRL Y-324) (taxid: 294746)

>sp|Q4PHA8|BRO1_USTMA Vacuolar protein-sorting protein BRO1 OS=Ustilago maydis (strain 521 / FGSC 9021) GN=BRO1 PE=3 SV=1

 Score = 47.8 bits (112), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 31/72 (43%), Positives = 33/72 (45%), Gaps = 4/72 (5%)

Query: 180  PPQAGYGYPPPPPQGAAPNGAYPPQQPGYGYPPPPPQQGYGYPPPPPQQGYGYPPPPPQQ 239
            P Q+ Y  PPP PQG            GYG PP P Q G GY    P   + Y  PPPQ 
Sbjct: 950  PTQSRYTSPPPVPQGQQTFSG----SSGYGMPPAPLQHGGGYGGSQPYAAHDYSSPPPQS 1005

Query: 240  GYGYPPQQPGYG 251
             YG P  Q  YG
Sbjct: 1006 PYGVPIGQQQYG 1017

Involved in concentration and sorting of cargo proteins of the multivesicular body (MVB) for incorporation into intralumenal vesicles.

Ustilago maydis (strain 521 / FGSC 9021) (taxid: 237631)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	305
351725843	290	cold-regulated protein [Glycine max] gi|	0.898	0.944	0.528	3e-55
351727731	290	src2 protein [Glycine max] gi|2055230|db	0.911	0.958	0.528	3e-55
225432286	291	PREDICTED: uncharacterized protein LOC10	0.688	0.721	0.512	1e-48
225450819	276	PREDICTED: uncharacterized protein LOC10	0.875	0.967	0.475	2e-46
255551719	283	conserved hypothetical protein [Ricinus	0.511	0.551	0.597	6e-44
357478755	233	hypothetical protein MTR_4g119780 [Medic	0.727	0.952	0.480	7e-44
224110568	289	predicted protein [Populus trichocarpa]	0.508	0.536	0.581	6e-43
356521871	290	PREDICTED: uncharacterized protein LOC10	0.708	0.744	0.472	7e-43
224123114	300	predicted protein [Populus trichocarpa]	0.547	0.556	0.572	1e-42
297834524	345	hypothetical protein ARALYDRAFT_479112 [	0.826	0.730	0.408	2e-40

>gi|351725843|ref|NP_001238642.1| cold-regulated protein [Glycine max] gi|213053828|gb|ACJ39219.1| cold-regulated protein [Glycine max]

 Score =  221 bits (564), Expect = 3e-55,   Method: Compositional matrix adjust.
 Identities = 167/316 (52%), Positives = 200/316 (63%), Gaps = 42/316 (13%)

Query: 3   SYRALDLNLISAKHLKDVHLISKMDVYAVVSISGDHTIKKQKVKSHVDRSGGSNPTWNFP 62
            YR L+LN+ISAK +K+V+L SKMDVYAVV++SGD  +  Q   +HV +  GSNPTWN+P
Sbjct: 4   EYRTLELNIISAKDIKNVNLFSKMDVYAVVTLSGD-PLHPQGATTHVHKDAGSNPTWNYP 62

Query: 63  IKFTFNQSLAQQNRLTLDFKIKSDGLLGDKTVGEVIVPIKELLDSSSSSSSGDAKSMKFV 122
           +KF+ N+SLA++NRL+L+ K+ SD  LGD  +G V VP++EL+D     + GD  S + V
Sbjct: 63  VKFSVNESLAKENRLSLEIKLVSDRTLGDTVIGTVHVPLRELMD-----NPGDDGSFRQV 117

Query: 123 TYQVRSSSGKPKGELHFSYKFSE--PTVGKTHAKAG-EPVTAYPAPMAAGSSSVPYAYPP 179
           +YQV   SGK KG L+FSYK  E  P       K G EPV AYP P  AGSSS+PY  P 
Sbjct: 118 SYQVMKQSGKSKGSLNFSYKVGEHVPAPAPKAPKTGQEPVMAYP-PTGAGSSSMPYGTPH 176

Query: 180 PP-------QAGYGYPPPPPQGAAPNGAYPPQQPGYGYPPPPPQQGYGYPPPPPQQGYGY 232
           PP         GYG              YPPQQ   GYP   PQQGYGYPP    Q  GY
Sbjct: 177 PPPPPPVAGSGGYG--------------YPPQQAYGGYP---PQQGYGYPP----QAAGY 215

Query: 233 PPPPPQQGYGYPPQQPGYGYPP-VKPAKKSNGGLGFGTGLLGGMLGGLLIGDIVSDAADY 291
             P  Q GYGY PQQPGYGYPP  +  KK+  G+G G GLLGG LGG+LIGD+VSDAADY
Sbjct: 216 GYPQHQSGYGY-PQQPGYGYPPQAQKPKKNKFGMGLGAGLLGGALGGMLIGDMVSDAADY 274

Query: 292 DG--DFGGDFGGDFDF 305
           D   D G D  G FDF
Sbjct: 275 DAGYDAGFDDAGGFDF 290

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|351727731|ref|NP_001236659.1| src2 protein [Glycine max] gi|2055230|dbj|BAA19769.1| SRC2 [Glycine max]

 Score =  221 bits (563), Expect = 3e-55,   Method: Compositional matrix adjust.
 Identities = 165/312 (52%), Positives = 198/312 (63%), Gaps = 34/312 (10%)

Query: 3   SYRALDLNLISAKHLKDVHLISKMDVYAVVSISGDHTIKKQKVKSHVDRSGGSNPTWNFP 62
            YR L+LN+ISAK +K+V+L SKMDVYA VS+SGD  +  Q   +HV +  GSNPTWN+P
Sbjct: 4   EYRTLELNIISAKDIKNVNLFSKMDVYAAVSLSGD-PLHPQGATTHVHKDAGSNPTWNYP 62

Query: 63  IKFTFNQSLAQQNRLTLDFKIKSDGLLGDKTVGEVIVPIKELLDSSSSSSSGDAKSMKFV 122
           +KF+ N+SLA++NRL+L+ K+ SD  LGD  +G V VP++ELLD     + GD  S + V
Sbjct: 63  VKFSVNESLAKENRLSLEIKLISDRTLGDTVIGTVHVPLRELLD-----NPGDDSSFRQV 117

Query: 123 TYQVRSSSGKPKGELHFSYKFSEPTVGKTHAKAG------EPVTAYPAPMAAGSSSVPYA 176
           +YQV   S K KG L+FSYKF E                 EPV AYP P  AGSSS+PY 
Sbjct: 118 SYQVMKQSRKSKGSLNFSYKFGEHVPAPAAKTPKAAKAGQEPVMAYP-PAGAGSSSMPY- 175

Query: 177 YPPPPQAGYGYPPPPPQGAAPNGAYPPQQPGYGYPPPPPQQGYGYPPPPPQQGYGYPPPP 236
                  G  +PPPP Q AA    YPPQQ   GY   PPQ  YGY   PPQ GYGY   P
Sbjct: 176 -------GTPHPPPPQQYAATGYGYPPQQVHGGY---PPQAAYGY---PPQTGYGY---P 219

Query: 237 PQQGYGYPPQQPGYGYPP-VKPAKKSNGGLGFGTGLLGGMLGGLLIGDIVSDAADYDG-- 293
            Q GYGY PQQ GYGYPP  +  KK+  G+G G GLLGG LGG+LIGD+VSDAA+YD   
Sbjct: 220 QQSGYGY-PQQSGYGYPPQAQKPKKNKFGMGLGAGLLGGALGGMLIGDMVSDAAEYDAGY 278

Query: 294 DFGGDFGGDFDF 305
           D G D  G FDF
Sbjct: 279 DAGFDDAGGFDF 290

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225432286|ref|XP_002272904.1| PREDICTED: uncharacterized protein LOC100242678 [Vitis vinifera]

 Score =  199 bits (507), Expect = 1e-48,   Method: Compositional matrix adjust.
 Identities = 127/248 (51%), Positives = 155/248 (62%), Gaps = 38/248 (15%)

Query: 3   SYRALDLNLISAKHLKDVHLISKMDVYAVVSISGDHTIKKQKVKSHVDRSGGSNPTWNFP 62
            YR L++N+ISAK LKDV+LISKMDVY VVSI+GD    + K K+ VDR GG+NPTWNFP
Sbjct: 2   EYRTLEINVISAKDLKDVNLISKMDVYVVVSINGDS---RSKQKTPVDRDGGTNPTWNFP 58

Query: 63  IKFTFNQSLAQQNRLTLDFKIKSDGLLGDKTVGEVIVPIKELLDSSSSSSSGDAKSMKFV 122
           +KFT ++S AQQNRLTL FK++ +  LGDK +GEV VPIKELLD      +G++K ++FV
Sbjct: 59  MKFTVDESAAQQNRLTLSFKLRCERTLGDKDIGEVNVPIKELLD-----PAGESKPIQFV 113

Query: 123 TYQVRSSSGKPKGELHFSYKFSEPTVGKTHA-----------------KAGEPVTAYPAP 165
           +YQVR  SGKPKGEL+ SYKF E ++ ++                   KA EPVTAYPA 
Sbjct: 114 SYQVRKPSGKPKGELNLSYKFGEKSMSQSATKAQEPVMAYPPAASVVPKADEPVTAYPAG 173

Query: 166 MAAGSSS----------VPYAYPPPPQAGYGYPPPPPQGAAPNGAYPPQQPGYGYPPPPP 215
           +AA SS+                PP Q        PP  A     YPP Q GYGY   PP
Sbjct: 174 VAASSSAYPPVGAYPPPPAGYGYPPQQPPPPGYGYPPPPAPAGYGYPPPQAGYGY---PP 230

Query: 216 QQGYGYPP 223
           QQGYGY P
Sbjct: 231 QQGYGYQP 238

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225450819|ref|XP_002283998.1| PREDICTED: uncharacterized protein LOC100245905 [Vitis vinifera] gi|147811137|emb|CAN76879.1| hypothetical protein VITISV_036709 [Vitis vinifera] gi|296089679|emb|CBI39498.3| unnamed protein product [Vitis vinifera]

 Score =  192 bits (487), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 148/311 (47%), Positives = 184/311 (59%), Gaps = 44/311 (14%)

Query: 3   SYRALDLNLISAKHLKDVHLISKMDVYAVVSISGD-HTIKKQKVKSHVDRSGGSNPTWNF 61
            YRALD+ ++ AK LKDV+L SKMDVY VV+ISGD  T++K    + VD+ GG++P WNF
Sbjct: 2   EYRALDIKVLEAKDLKDVNLFSKMDVYVVVTISGDPRTVQK----TPVDKDGGTSPKWNF 57

Query: 62  PIKFTFNQSLAQQNRLTLDFKIKSDGLLGDKTVGEVIVPIKELLDSSSSSSSGDAKSMKF 121
            +KFT + +LA QNR+ L+F ++S+  LGD+ +GEV VP+KELLD++S     D K  + 
Sbjct: 58  SMKFTVDDALAHQNRIGLNFTLRSNRALGDRDIGEVYVPLKELLDNAS-----DDKVDRV 112

Query: 122 VTYQVRSSSGKPKGELHFSYKFSEPTVGKTHA--KAGEPVTAYPAPMAAGSSSVPYAYPP 179
           V++QVR  SGKP+G L FSYKF E       A  KA +PV AYPA      SS  YAYPP
Sbjct: 113 VSFQVRKQSGKPQGTLSFSYKFGEKFSAPAPAARKADDPVMAYPAVAPGAGSSSAYAYPP 172

Query: 180 PPQAGYGYPP----PPPQGAAPNGAYPPQQPGYGYPPPPPQQGYGYPPPPPQQG-YGYPP 234
              AG GYPP    PPP GA P+ A        G  P PP  GY      PQ G YG+  
Sbjct: 173 ---AG-GYPPRGAYPPPAGAYPHHA--------GAYPYPPSSGY------PQGGVYGH-- 212

Query: 235 PPPQQGYGYPPQQPGYGYPPVKPAKKSNGGLGFGTGLLGGMLGGLLIGDIVSDAADYDGD 294
            PPQ GYGY     GYG P      +      FG GL  G+LGGLLIGD++ D A YD  
Sbjct: 213 -PPQMGYGY-----GYGCPQQVQQPQKK-KNKFGLGLGAGLLGGLLIGDMMGDVAGYDAG 265

Query: 295 FGGDFGGDFDF 305
           +   F    DF
Sbjct: 266 YDAGFDDGMDF 276

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255551719|ref|XP_002516905.1| conserved hypothetical protein [Ricinus communis] gi|223543993|gb|EEF45519.1| conserved hypothetical protein [Ricinus communis]

 Score =  184 bits (466), Expect = 6e-44,   Method: Compositional matrix adjust.
 Identities = 98/164 (59%), Positives = 114/164 (69%), Gaps = 8/164 (4%)

Query: 5   RALDLNLISAKHLKDVHLISKMDVYAVVSISGDHTIKKQKVKSHVDRSGGSNPTWNFPIK 64
           R L++ LISAK LKDV+L SKMDVYAV+SISGD    KQK K+ VD  GG NPTWNFP K
Sbjct: 4   RTLEIKLISAKDLKDVNLFSKMDVYAVLSISGDSQQPKQKTKTPVDHDGGINPTWNFPAK 63

Query: 65  FTFNQSLAQQNRLTLDFKIKSDGLLGDKTVGEVIVPIKELLDSSSSSSSGDAKSMKFVTY 124
           F   ++ AQQNRL LD K++ +  LGDK VGEV VPIKELLD    S +GD  SM+FV Y
Sbjct: 64  FIIIETPAQQNRLNLDIKLRCERALGDKDVGEVHVPIKELLD----SINGDGNSMQFVNY 119

Query: 125 QVRSSSGKPKGELHFSYKFSEPTVG----KTHAKAGEPVTAYPA 164
           QVR  SGK KGEL FS+KFS+  V     K   K  +P+TAYP 
Sbjct: 120 QVRKPSGKSKGELSFSFKFSDKIVASGSEKASDKVDQPITAYPV 163

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357478755|ref|XP_003609663.1| hypothetical protein MTR_4g119780 [Medicago truncatula] gi|217071956|gb|ACJ84338.1| unknown [Medicago truncatula] gi|355510718|gb|AES91860.1| hypothetical protein MTR_4g119780 [Medicago truncatula] gi|388514613|gb|AFK45368.1| unknown [Medicago truncatula]

 Score =  183 bits (465), Expect = 7e-44,   Method: Compositional matrix adjust.
 Identities = 122/254 (48%), Positives = 150/254 (59%), Gaps = 32/254 (12%)

Query: 3   SYRALDLNLISAKHLKDVHLISKMDVYAVVSISGDHTIKKQKVKSHVDRSGGSNPTWNFP 62
            Y+ L+LNL SAK L +V+L  KMDVYAVVSI GD  + KQK K+ +DR  G+NPTWNF 
Sbjct: 2   EYKTLELNLSSAKDLNNVNLFYKMDVYAVVSIFGD-PLHKQKTKTPLDREAGTNPTWNFS 60

Query: 63  IKFTFNQSLAQQNRLTLDFKIKSDGLLGDKTVGEVIVPIKELLDSSSSSSSGDAKSMKFV 122
           +KFTFN+ LA+QNRLTL   ++    L DK +G V +P++EL+       +GD +  + V
Sbjct: 61  VKFTFNELLARQNRLTLKITLRCLRNLVDKNIGSVKIPLRELVH----DHTGDGELFQHV 116

Query: 123 TYQVRSSSGKPKGELHFSYKFSEPTVGKTHAKAGEPVTAYPAPMAAGSSSVPYA---YPP 179
           +YQVR  SGKPKG  +FSYKF+ P   K HA      T YP+P A GS+S P+      P
Sbjct: 117 SYQVRKPSGKPKGSFNFSYKFNPPM--KEHA------TGYPSP-AVGSTSAPHTVANLSP 167

Query: 180 PPQAGYGYPPPPPQGAAPNGAYPPQQPGYGYPPPPPQQGYGYPPPPPQQGYGYPPPPPQQ 239
            PQ              P   + P Q GYGY   P Q  YGY   PPQ  YGY   PPQ 
Sbjct: 168 QPQYP-----AGYVYPPPPPYHQPPQMGYGY---PQQMEYGY---PPQNAYGY---PPQN 213

Query: 240 GYGYPPQQPGYGYP 253
            YGY PQQ GYG P
Sbjct: 214 NYGY-PQQNGYGVP 226

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224110568|ref|XP_002315561.1| predicted protein [Populus trichocarpa] gi|222864601|gb|EEF01732.1| predicted protein [Populus trichocarpa]

 Score =  180 bits (457), Expect = 6e-43,   Method: Compositional matrix adjust.
 Identities = 100/172 (58%), Positives = 122/172 (70%), Gaps = 17/172 (9%)

Query: 5   RALDLNLISAKHLKDVHLISKMDVYAVVSISGDHTIK--KQKVKSHVDRSGGSNPTWNFP 62
           R L++N+ISA+ LKDV+ ISKMDVYAVVSISG  + +  KQK K+ VDR GG NPTWNFP
Sbjct: 4   RTLEINVISARDLKDVNYISKMDVYAVVSISGVDSKQQPKQKTKTPVDRDGGKNPTWNFP 63

Query: 63  IKFTFNQSLAQQNRLTLDFKIKSDGLLGDKTVGEVIVPIKELLDSSSSSSSGDAKSMKFV 122
           IKFT  ++   +N L+L FK+K +  LGDK +GEV VPIKELLD     S+GD KSMKFV
Sbjct: 64  IKFTIPETSLAENHLSLVFKLKCERALGDKDIGEVNVPIKELLD-----SAGDGKSMKFV 118

Query: 123 TYQVRSSSGKPKGELHFSYKFSE------PTVGKTHAKA----GEPVTAYPA 164
           +YQVR  SGKPKGE++FS+KF E      P    + AKA     +PV AYPA
Sbjct: 119 SYQVRKPSGKPKGEINFSFKFGEIEKVVVPEASSSAAKATNSNSQPVAAYPA 170

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356521871|ref|XP_003529574.1| PREDICTED: uncharacterized protein LOC100784458 [Glycine max]

 Score =  180 bits (456), Expect = 7e-43,   Method: Compositional matrix adjust.
 Identities = 120/254 (47%), Positives = 148/254 (58%), Gaps = 38/254 (14%)

Query: 3   SYRALDLNLISAKHLKDVHLISKMDVYAVVSISGDHTIKKQKVKSHVDRSGGSNPTWNFP 62
            +R L+LNL SAK LKD+++ SKMDVYAV+S+SGD     QK K+ V R+GG+NPTWNFP
Sbjct: 2   EHRTLELNLASAKDLKDLNIFSKMDVYAVLSLSGD-----QKTKTPVHRNGGTNPTWNFP 56

Query: 63  IKFTFNQSLAQQNRLTLDFKIKSD-GLLGDKTVGEVIVPIKELLDSSSSSSSGDAKSMKF 121
           +KFTF++S+A+QNRL L+ KI+S+  L  DK +G+V VP+ ELL        GD KS + 
Sbjct: 57  VKFTFDESVARQNRLALEIKIRSERALATDKDIGQVHVPLMELL-----KQPGDGKSFQH 111

Query: 122 VTYQVRSSSGKPKGELHFSYKFSEPTVGKTHAKA---------GEPVTAYPAPMAAGSSS 172
           V+YQVR  SGKPKG L+FSYKF +         A          +PVTAYPAP A GS+S
Sbjct: 112 VSYQVRKPSGKPKGALNFSYKFGDEFAAPAKVSAPAPTSPSHKVDPVTAYPAP-AVGSTS 170

Query: 173 VPYAYPPPPQAGYGYPPPPPQGAAPNGAYPPQQPGYGYPPPPPQQGYGYPPPPPQQGYGY 232
                   P         PP     +G        YGY    PQ GYGY    PQ  YGY
Sbjct: 171 SAAYPAMYPPPPPPQYAYPPPPQPAHG--------YGY---APQHGYGY---APQAAYGY 216

Query: 233 PPPPPQQGYGYPPQ 246
               PQ  YGY PQ
Sbjct: 217 ---APQAAYGYAPQ 227

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224123114|ref|XP_002330342.1| predicted protein [Populus trichocarpa] gi|224123120|ref|XP_002330343.1| predicted protein [Populus trichocarpa] gi|224146536|ref|XP_002336315.1| predicted protein [Populus trichocarpa] gi|222834629|gb|EEE73092.1| predicted protein [Populus trichocarpa] gi|222871546|gb|EEF08677.1| predicted protein [Populus trichocarpa] gi|222871547|gb|EEF08678.1| predicted protein [Populus trichocarpa]

 Score =  179 bits (454), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 106/185 (57%), Positives = 126/185 (68%), Gaps = 18/185 (9%)

Query: 5   RALDLNLISAKHLKDVHLISKMDVYAVVSISGDHTIKKQKVKSH--VDRSGGSNPTWNFP 62
           R L++N+ISA+ LKDV+ ISKMDVYAVVSISGD + +K K K+   VDR+GG NPTWNFP
Sbjct: 4   RTLEINVISARGLKDVNYISKMDVYAVVSISGDDSKQKPKQKTKTPVDRAGGKNPTWNFP 63

Query: 63  IKFTFNQSLAQQNRLTLDFKIKSDGLLGDKTVGEVIVPIKELLDSSSSSSSGDAKSMKFV 122
           IKFT  Q+   +NRL L   +K +  LGDK VGEV VP+KELLD     S+GD KSMKFV
Sbjct: 64  IKFTIPQTPLAENRLNLVCNLKCERALGDKDVGEVNVPVKELLD-----SAGDGKSMKFV 118

Query: 123 TYQVRSSSGKPKGELHFSYKFS--EPTV---------GKTHAKAGEPVTAYPAPMAAGSS 171
           +YQVR  SGKPKGE+ FS+KFS  E  V          K    + +PVTAY A    G S
Sbjct: 119 SYQVRKPSGKPKGEVSFSFKFSGIEKVVVPEVSTAAAAKATNSSSQPVTAYAAVPVVGPS 178

Query: 172 SVPYA 176
           SVPYA
Sbjct: 179 SVPYA 183

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297834524|ref|XP_002885144.1| hypothetical protein ARALYDRAFT_479112 [Arabidopsis lyrata subsp. lyrata] gi|297330984|gb|EFH61403.1| hypothetical protein ARALYDRAFT_479112 [Arabidopsis lyrata subsp. lyrata]

 Score =  172 bits (435), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 114/279 (40%), Positives = 153/279 (54%), Gaps = 27/279 (9%)

Query: 6   ALDLNLISAKHLKDVHLISKMDVYAVVSISGDHTIKKQKVKSHVDRSGGSNPTWNFPIKF 65
            L+LN+ SAK L++V+LI+KMDVYAVV I+GD + K  K K+ +DR+G S PTWN  +KF
Sbjct: 5   TLELNIYSAKDLENVNLITKMDVYAVVWITGDDSQKNHKEKTPIDRTGESEPTWNHTVKF 64

Query: 66  TFNQSLAQQNRLTLDFKIKSDGLLGDKTVGEVIVPIKELLDSSSS-SSSGDAK-SMKFVT 123
           + +Q LA + RLTL  K+  D + GDK +GEV VP+  LL  SSS S++G+ +  M+FVT
Sbjct: 65  SVDQRLAHEGRLTLVVKLVCDRIFGDKDLGEVQVPVLGLLHGSSSPSTNGNGQGMMRFVT 124

Query: 124 YQVRSSSGKPKGELHFSYKFSEPTVGKTHAKAGEPVTAYPAPMAAGSSSVPYAYPP---- 179
           YQV++  GK +G L FSY+F  P+       +  PV + P  + +  SS    YPP    
Sbjct: 125 YQVKTPFGKGQGSLTFSYRFDTPSFKPDLPASSPPVYSIPMDIPSDYSSTTTNYPPPSSE 184

Query: 180 ----PPQAGYGYPP-PPPQGAAPNGAYP------------PQQPGYGYPPPPPQQGYGYP 222
               PP +  GYPP  PPQ  +                  P+QP   YPPP P     YP
Sbjct: 185 ASFYPPISSIGYPPSSPPQDYSAPPYPYPNPNPYQYDSQYPEQPATVYPPPSPSASNLYP 244

Query: 223 PP----PPQQGYGYPPPPPQQGYGYPPQQPGYGYPPVKP 257
           PP     P     YPPPP    +   P Q  +G+ P  P
Sbjct: 245 PPYYSTSPTHHQSYPPPPGHSYHQTQPSQSFHGFAPSSP 283

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	305
TAIR|locus:2088334	360	AT3G16510 "AT3G16510" [Arabido	0.495	0.419	0.487	1.1e-32
TAIR|locus:2036004	324	SRC2 "AT1G09070" [Arabidopsis	0.518	0.487	0.475	1.6e-29
TAIR|locus:504955431	289	AT4G15755 "AT4G15755" [Arabido	0.462	0.487	0.458	9.1e-29
TAIR|locus:2081745	298	AT3G62780 "AT3G62780" [Arabido	0.429	0.439	0.413	6.3e-21
TAIR|locus:2197868	601	AT1G04540 "AT1G04540" [Arabido	0.422	0.214	0.310	3.6e-08
TAIR|locus:2099946	156	AT3G55470 "AT3G55470" [Arabido	0.416	0.814	0.297	4.8e-07
TAIR|locus:2079762	122	AT3G05440 "AT3G05440" [Arabido	0.318	0.795	0.257	5.1e-06
TAIR|locus:2124933	250	AT4G01200 "AT4G01200" [Arabido	0.422	0.516	0.262	1e-05
TAIR|locus:2102980	391	AT3G04360 "AT3G04360" [Arabido	0.413	0.322	0.294	1.4e-05
TAIR|locus:2041654	401	AT2G13350 "AT2G13350" [Arabido	0.409	0.311	0.285	1.4e-05

TAIR|locus:2088334 AT3G16510 "AT3G16510" [Arabidopsis thaliana (taxid:3702)]

 Score = 357 (130.7 bits), Expect = 1.1e-32, P = 1.1e-32
 Identities = 77/158 (48%), Positives = 105/158 (66%)

Query:     7 LDLNLISAKHLKDVHLISKMDVYAVVSISGDHTIKKQKVKSHVDRSGGSNPTWNFPIKFT 66
             L+LN+ SAK L++V+LI+KMDVYAVV I+GD + K  K K+ +DR+G S PTWN  +KF+
Sbjct:     6 LELNVYSAKDLENVNLITKMDVYAVVWITGDDSRKNHKEKTPIDRTGESEPTWNHTVKFS 65

Query:    67 FNQSLAQQNRLTLDFKIKSDGLLGDKTVGEVIVPIKELLDXXXX-XXXGDAKSM-KFVTY 124
              +Q LA + RLTL  K+  D + GDK +GEV VP+ ELL         GD + M +FVTY
Sbjct:    66 VDQRLAHEGRLTLVVKLVCDRIFGDKDLGEVQVPVLELLHGSSSPSSNGDGQGMMRFVTY 125

Query:   125 QVRSSSGKPKGELHFSYKFSEPTVGKTHAKAGEPVTAY 162
             QVR+  GK +G L FSY+F  PT      K  +PV+++
Sbjct:   126 QVRTPFGKGQGSLTFSYRFDSPTF-----KPDQPVSSH 158

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2036004 SRC2 "AT1G09070" [Arabidopsis thaliana (taxid:3702)]

 Score = 327 (120.2 bits), Expect = 1.6e-29, P = 1.6e-29
 Identities = 86/181 (47%), Positives = 107/181 (59%)

Query:     5 RALDLNLISAKHLKDVHLISKMDVYAVVSISGDHTIKKQKVKSHVDRSGGSNPTWNFPIK 64
             R+LDL +ISA+ LKDV LI K D+YAVVSI+GD   K QK K  VD+  G+ P W   +K
Sbjct:     4 RSLDLTIISAEDLKDVQLIGKQDLYAVVSINGDARTK-QKTK--VDKDCGTKPKWKHQMK 60

Query:    65 FTFNQSLAQQNRLTLDFKIKSDG-LLGDKTVGEVIVPIKELLDXXXXXXXGDAKSMKFVT 123
              T + + A+ NRLTL F+I +D  + GDK VGEV VP+KELLD       GD +  K VT
Sbjct:    61 LTVDDAAARDNRLTLVFEIVADRPIAGDKPVGEVSVPVKELLDQNK----GDEE--KTVT 114

Query:   124 YQVRSSSGKPKGELHFSYKFSEP-TVGKT------------HAKAGEPVTAYPAPMAAGS 170
             Y VR  +GK KG L FS+KF E  T G +            H    +PVTAYP    A S
Sbjct:   115 YAVRLPNGKAKGSLKFSFKFGEKYTYGSSSGPHAPVPSAMDHKTMDQPVTAYPPGHGAPS 174

Query:   171 S 171
             +
Sbjct:   175 A 175

GO:0000326 "protein storage vacuole" evidence=IDA

GO:0005515 "protein binding" evidence=IPI

GO:0005783 "endoplasmic reticulum" evidence=IDA

GO:0006623 "protein targeting to vacuole" evidence=RCA;TAS

GO:0006612 "protein targeting to membrane" evidence=RCA

GO:0006820 "anion transport" evidence=RCA

GO:0006862 "nucleotide transport" evidence=RCA

GO:0006888 "ER to Golgi vesicle-mediated transport" evidence=RCA

GO:0006944 "cellular membrane fusion" evidence=RCA

GO:0009611 "response to wounding" evidence=RCA

GO:0009612 "response to mechanical stimulus" evidence=RCA

GO:0009646 "response to absence of light" evidence=RCA

GO:0010200 "response to chitin" evidence=RCA

GO:0010363 "regulation of plant-type hypersensitive response" evidence=RCA

GO:0015696 "ammonium transport" evidence=RCA

GO:0015802 "basic amino acid transport" evidence=RCA

GO:0043069 "negative regulation of programmed cell death" evidence=RCA

GO:0043090 "amino acid import" evidence=RCA

GO:0043269 "regulation of ion transport" evidence=RCA

GO:0005886 "plasma membrane" evidence=IDA

TAIR|locus:504955431 AT4G15755 "AT4G15755" [Arabidopsis thaliana (taxid:3702)]

 Score = 320 (117.7 bits), Expect = 9.1e-29, P = 9.1e-29
 Identities = 66/144 (45%), Positives = 99/144 (68%)

Query:     7 LDLNLISAKHLKDVHLISKMDVYAVVSISGDHTIKKQKVKSHVDRSGGSNPTWNFPIKFT 66
             L+LN+ SA++L +V+LI+KM+V+  ++I+G++T KKQK K+ VDR GGSNPTWN  IKF+
Sbjct:     6 LELNINSARNLLNVNLITKMNVFTAITINGENTRKKQKAKTTVDRYGGSNPTWNQTIKFS 65

Query:    67 FNQSLAQQNRLTLDFKIKSDGLLGDKTVGEVIVPIKELLDXXXXXXXGDAKS--MKFVTY 124
              ++  A+    +L  ++ S  +LG+K +G V +P+ ELL+       GD     MK ++Y
Sbjct:    66 VDERSARGGHSSLVMRVISRRVLGNKEIGRVNIPLLELLNATTPSFNGDGNDHEMKLMSY 125

Query:   125 QVRSSSGKPKGELHFSYKFSEPTV 148
             QVR+SSGK  G L FSY+F +P V
Sbjct:   126 QVRTSSGKRSGSLSFSYRF-KPNV 148

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2081745 AT3G62780 "AT3G62780" [Arabidopsis thaliana (taxid:3702)]

 Score = 246 (91.7 bits), Expect = 6.3e-21, P = 6.3e-21
 Identities = 60/145 (41%), Positives = 86/145 (59%)

Query:     5 RALDLNLISAKHLKDVHLISKMDVYAVVSISGDHTIKKQKV-KSHVDRSGGSNPTW-NFP 62
             R+L++N+ SAK LK V   SKMDV+  V +SGD      +  ++   R GG++P W N  
Sbjct:     4 RSLEINVTSAKGLKKV---SKMDVFVAVKLSGDPKCSDHREQRTQAARDGGTSPKWSNDV 60

Query:    63 IKFTFNQSLAQQNRLTLDFKIKSDGLLG-DKTVGEVIVPIKELLDXXXXXXXGDAKSMKF 121
             +KF  +Q+LA+ NRL + FKIK +   G DK +GEV V +KELLD        D    ++
Sbjct:    61 MKFILDQNLAEANRLVITFKIKCEQRGGVDKDIGEVHVQVKELLDHLG----NDKTGQRY 116

Query:   122 VTYQVRSSSGKPKGELHFSYKFSEP 146
             VTYQ+    GK K ++ F+Y F+ P
Sbjct:   117 VTYQI----GKSKADISFTYSFTGP 137

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2197868 AT1G04540 "AT1G04540" [Arabidopsis thaliana (taxid:3702)]

 Score = 136 (52.9 bits), Expect = 3.6e-08, P = 3.6e-08
 Identities = 45/145 (31%), Positives = 71/145 (48%)

Query:     3 SYRALDLNLISAKHLKDVHLISKMDVYAVVSISGDHTIKKQKVKSHVDRSGGSNPTWNFP 62
             S++ L+LN+ISA+ L  V    K   YAV  +   H+  ++K+ + VD +GG+NPTWN  
Sbjct:     7 SFQLLELNIISAQDLAPV--ARKTKTYAVAWV---HS--ERKLTTRVDYNGGTNPTWNDK 59

Query:    63 IKFTFNQSLAQQNRLTLDFKIKSDGLLGDKTVGEVIVPIKELLDXXXXXXXGDAKS---- 118
               F  N+     +   +  +I +     D  VG V V I  L+          + +    
Sbjct:    60 FVFRVNEEFLYADTSAVVIEIYALHWFRDVHVGTVRVLISNLIPPNRRPGYRTSNNEYRR 119

Query:   119 -----MKFVTYQVRSSSGKPKGELH 138
                  M+FV  QVR +SG+P+G L+
Sbjct:   120 TPPPGMRFVALQVRRTSGRPQGILN 144

GO:0008150 "biological_process" evidence=ND

GO:0016020 "membrane" evidence=IDA

TAIR|locus:2099946 AT3G55470 "AT3G55470" [Arabidopsis thaliana (taxid:3702)]

 Score = 115 (45.5 bits), Expect = 4.8e-07, P = 4.8e-07
 Identities = 42/141 (29%), Positives = 59/141 (41%)

Query:     7 LDLNLISAKHLKDVHLISKMDVYAVVSISGDHTIKKQKVKSHVDRSGGSNPTWNFPIKFT 66
             L+++LIS K LK    + K+D Y  +   G  T K    K      GG NPTWN  +K+ 
Sbjct:     6 LEVSLISGKGLKRSDFLGKIDPYVEIQYKGQ-TRKSSVAKE----DGGRNPTWNDKLKWR 60

Query:    67 --FNQSLAQQNRLTLDFKIKS-DGLLGDKTVGEVIVPIKELLDXXXXXXXGDAKSMKFVT 123
               F  S A    +    K+   D    D  +GE  V +KELL+        + +  K   
Sbjct:    61 AEFPGSGADYKLIV---KVMDHDTFSSDDFIGEATVHVKELLEMGVEKGTAELRPTK--- 114

Query:   124 YQVRSSSGKPKGELHFSYKFS 144
             Y +  S     GEL     +S
Sbjct:   115 YNIVDSDLSFVGELLIGVSYS 135

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

GO:0006612 "protein targeting to membrane" evidence=RCA

GO:0009963 "positive regulation of flavonoid biosynthetic process" evidence=RCA

GO:0010363 "regulation of plant-type hypersensitive response" evidence=RCA

TAIR|locus:2079762 AT3G05440 "AT3G05440" [Arabidopsis thaliana (taxid:3702)]

 Score = 106 (42.4 bits), Expect = 5.1e-06, P = 5.1e-06
 Identities = 26/101 (25%), Positives = 51/101 (50%)

Query:     1 MASYRALDLNLISAKHLKDVHLISKMDVYAVVSISGDHTIKKQKVKSHVDRSGGSNPTWN 60
             M  Y+ +++N++SA+ L  ++L+ +  VY  VS++     K+    +  D+       WN
Sbjct:     1 MEYYQPVEINVLSAQDLNSINLLFRPTVYVSVSVTRGSRDKQVTPAAAWDKKF---LRWN 57

Query:    61 FPIKFTFNQSLAQQNRLTLDFKIKSDGLLG-DKTVGEVIVP 100
             + +KF       ++N     F+IK     G D+ VG++ +P
Sbjct:    58 YRMKFYIEDDKVRRNESVFVFQIKCKRFFGSDQVVGKLFIP 98

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2124933 AT4G01200 "AT4G01200" [Arabidopsis thaliana (taxid:3702)]

 Score = 119 (46.9 bits), Expect = 1.0e-05, P = 1.0e-05
 Identities = 37/141 (26%), Positives = 59/141 (41%)

Query:     1 MASYRALDLNLISAKHLKD-VHLISKMDVYAVVSISGDHTIKKQKVKSHVDRSGGSNPTW 59
             M   + L++NLISA+ LK+    + ++  YA V +         K+++ +DR G  NP W
Sbjct:     1 MEETQVLEINLISAQGLKEPTGKLRRLQTYASVWVDSS-----SKLRTRIDRIGSENPIW 55

Query:    60 NFPIKFTFNQSLAQQNRLTLDFKIKSDGLLGDKTVGEVIVPIKELLDXXXXXXXGDAKSM 119
             N    F  +          +  +I + G L D  +G V   +   L           K  
Sbjct:    56 NDKFVFQVSPEFLSSETSGVSIEIYAVGYLRDHLIGTVRFLVSNFLPTAA------VKVP 109

Query:   120 KFVTYQVRSSSGKPKGELHFS 140
               V  Q+R  SGK  G L+ +
Sbjct:   110 SLVALQIRRPSGKFHGVLNIA 130

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2102980 AT3G04360 "AT3G04360" [Arabidopsis thaliana (taxid:3702)]

 Score = 121 (47.7 bits), Expect = 1.4e-05, P = 1.4e-05
 Identities = 40/136 (29%), Positives = 63/136 (46%)

Query:     7 LDLNLISAKHLKDVHLISKMDVYAVVSISGDHTIKKQKVKSHVDRSGGSNPTWNFPIKFT 66
             L++NLISA+ L  V     M  Y+V  I+ D     +K+ + VD+S  +NP WN    F 
Sbjct:    11 LEINLISAQDLAPVS--RNMKTYSVAWINTD---PMRKLTTRVDQSNRANPIWNEKFVFR 65

Query:    67 FNQSLAQQNRLTLDFKIKSDGLLGDKTVGEVIVPIKELLDXXXXXXXGDA-----KSMKF 121
              N  +   +   +  +I +     D  VG V V + +L         G+       +M+ 
Sbjct:    66 VNDKILYVDASAIVIEIYAAAWAKDALVGTVNVLLSDLFAPWSGFGDGNDGGGGNNNMRL 125

Query:   122 VTYQVRSSSGKPKGEL 137
             VT Q+R  SG+ +G L
Sbjct:   126 VTLQIRRPSGRLQGFL 141

GO:0003674 "molecular_function" evidence=ND

GO:0005576 "extracellular region" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2041654 AT2G13350 "AT2G13350" [Arabidopsis thaliana (taxid:3702)]

 Score = 121 (47.7 bits), Expect = 1.4e-05, P = 1.4e-05
 Identities = 40/140 (28%), Positives = 68/140 (48%)

Query:     1 MASYRALDLNLISAKHLKDVHLISKMDVYAVVSISGDHTIKKQKVKSHVDRSGGSNPTWN 60
             +A  + L+LN+ISA+ L  V    K   YA+  I  +     +K+ + VD +GG++PTWN
Sbjct:     4 LAPCQILELNIISAQELAPVARCMK--TYAIAWIDPE-----RKLTTRVDNTGGTSPTWN 56

Query:    61 FPIKFTFNQSLAQQNRLTLDFKIKSDGLLGDKTVGEVIVPIKELLDXXXXXXXGDAKSMK 120
                 F  ++         +  +I +     D  VG V   I +L+          + +M+
Sbjct:    57 DKFVFRLDEEALYDATSIVVIEIYALHWFKDIHVGTVQALISDLVS--------PSSAMR 108

Query:   121 FVTYQVRSSSGKPKGELHFS 140
             FVT +V  +SG+P G L+ +
Sbjct:   109 FVTLEVLRASGRPHGLLNIA 128

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

GO:0006944 "cellular membrane fusion" evidence=RCA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	305
cd04051	125	cd04051, C2_SRC2_like, C2 domain present in Soybea	1e-49
smart00239	101	smart00239, C2, Protein kinase C conserved region	1e-13
pfam00168	85	pfam00168, C2, C2 domain	9e-13
cd04049	124	cd04049, C2_putative_Elicitor-responsive_gene, C2	2e-12
cd00030	102	cd00030, C2, C2 domain	2e-12
cd04044	124	cd04044, C2A_Tricalbin-like, C2 domain first repea	1e-10
pfam09770	804	pfam09770, PAT1, Topoisomerase II-associated prote	2e-08
PHA03247	3151	PHA03247, PHA03247, large tegument protein UL36; P	1e-07
cd00275	128	cd00275, C2_PLC_like, C2 domain present in Phospho	2e-07
PRK07764	824	PRK07764, PRK07764, DNA polymerase III subunits ga	2e-07
pfam09770	804	pfam09770, PAT1, Topoisomerase II-associated prote	3e-07
pfam09770	804	pfam09770, PAT1, Topoisomerase II-associated prote	3e-07
pfam09770	804	pfam09770, PAT1, Topoisomerase II-associated prote	6e-07
pfam09770	804	pfam09770, PAT1, Topoisomerase II-associated prote	1e-06
pfam07174	297	pfam07174, FAP, Fibronectin-attachment protein (FA	5e-06
cd04050	105	cd04050, C2B_Synaptotagmin-like, C2 domain second	8e-06
cd08681	118	cd08681, C2_fungal_Inn1p-like, C2 domain found in	9e-06
PRK07764	824	PRK07764, PRK07764, DNA polymerase III subunits ga	1e-05
pfam06682	317	pfam06682, DUF1183, Protein of unknown function (D	1e-05
PRK07764	824	PRK07764, PRK07764, DNA polymerase III subunits ga	2e-05
pfam07223	357	pfam07223, DUF1421, Protein of unknown function (D	2e-05
PHA03378	991	PHA03378, PHA03378, EBNA-3B; Provisional	2e-05
PRK07764	824	PRK07764, PRK07764, DNA polymerase III subunits ga	3e-05
TIGR01628	562	TIGR01628, PABP-1234, polyadenylate binding protei	3e-05
cd04021	125	cd04021, C2_E3_ubiquitin_ligase, C2 domain present	3e-05
pfam04652	315	pfam04652, DUF605, Vta1 like	3e-05
PHA03378	991	PHA03378, PHA03378, EBNA-3B; Provisional	4e-05
cd04052	111	cd04052, C2B_Tricalbin-like, C2 domain second repe	4e-05
pfam09770	804	pfam09770, PAT1, Topoisomerase II-associated prote	5e-05
PRK03427	333	PRK03427, PRK03427, cell division protein ZipA; Pr	6e-05
PRK14965	576	PRK14965, PRK14965, DNA polymerase III subunits ga	7e-05
PRK07764	824	PRK07764, PRK07764, DNA polymerase III subunits ga	8e-05
pfam04652	315	pfam04652, DUF605, Vta1 like	8e-05
PRK07764	824	PRK07764, PRK07764, DNA polymerase III subunits ga	1e-04
PRK03427	333	PRK03427, PRK03427, cell division protein ZipA; Pr	1e-04
PRK10263	1355	PRK10263, PRK10263, DNA translocase FtsK; Provisio	1e-04
pfam09770	804	pfam09770, PAT1, Topoisomerase II-associated prote	2e-04
PHA03247	3151	PHA03247, PHA03247, large tegument protein UL36; P	2e-04
PRK07764	824	PRK07764, PRK07764, DNA polymerase III subunits ga	2e-04
PRK07764	824	PRK07764, PRK07764, DNA polymerase III subunits ga	2e-04
PRK07764	824	PRK07764, PRK07764, DNA polymerase III subunits ga	2e-04
PRK10263	1355	PRK10263, PRK10263, DNA translocase FtsK; Provisio	2e-04
cd08394	127	cd08394, C2A_Munc13, C2 domain first repeat in Mun	2e-04
pfam13388	422	pfam13388, DUF4106, Protein of unknown function (D	3e-04
pfam14179	110	pfam14179, YppG, YppG-like protein	3e-04
pfam10349	111	pfam10349, WWbp, WW-domain ligand protein	4e-04
PRK14951	618	PRK14951, PRK14951, DNA polymerase III subunits ga	4e-04
PRK14086	617	PRK14086, dnaA, chromosomal replication initiation	4e-04
PRK14086	617	PRK14086, dnaA, chromosomal replication initiation	4e-04
pfam10349	111	pfam10349, WWbp, WW-domain ligand protein	5e-04
PRK14950	585	PRK14950, PRK14950, DNA polymerase III subunits ga	5e-04
pfam07223	357	pfam07223, DUF1421, Protein of unknown function (D	7e-04
PRK14951	618	PRK14951, PRK14951, DNA polymerase III subunits ga	7e-04
PRK14951	618	PRK14951, PRK14951, DNA polymerase III subunits ga	7e-04
PHA03378	991	PHA03378, PHA03378, EBNA-3B; Provisional	8e-04
pfam04652	315	pfam04652, DUF605, Vta1 like	8e-04
PRK07764	824	PRK07764, PRK07764, DNA polymerase III subunits ga	0.001
PRK14965	576	PRK14965, PRK14965, DNA polymerase III subunits ga	0.001
PRK14951	618	PRK14951, PRK14951, DNA polymerase III subunits ga	0.001
PRK14951	618	PRK14951, PRK14951, DNA polymerase III subunits ga	0.001
PRK07764	824	PRK07764, PRK07764, DNA polymerase III subunits ga	0.002
TIGR01628	562	TIGR01628, PABP-1234, polyadenylate binding protei	0.002
pfam04652	315	pfam04652, DUF605, Vta1 like	0.002
PRK10263	1355	PRK10263, PRK10263, DNA translocase FtsK; Provisio	0.002
PRK10263	1355	PRK10263, PRK10263, DNA translocase FtsK; Provisio	0.002
pfam13388	422	pfam13388, DUF4106, Protein of unknown function (D	0.002
pfam14179	110	pfam14179, YppG, YppG-like protein	0.002
PRK14950	585	PRK14950, PRK14950, DNA polymerase III subunits ga	0.002
PRK12323	700	PRK12323, PRK12323, DNA polymerase III subunits ga	0.002
PRK07764	824	PRK07764, PRK07764, DNA polymerase III subunits ga	0.003
pfam12273	124	pfam12273, RCR, Chitin synthesis regulation, resis	0.003
COG5178	2365	COG5178, PRP8, U5 snRNP spliceosome subunit [RNA p	0.003
pfam10152	147	pfam10152, DUF2360, Predicted coiled-coil domain-c	0.003
PHA03369	663	PHA03369, PHA03369, capsid maturational protease;	0.003
PHA03377	1000	PHA03377, PHA03377, EBNA-3C; Provisional	0.003
PRK10263	1355	PRK10263, PRK10263, DNA translocase FtsK; Provisio	0.004
pfam09483	185	pfam09483, HpaP, Type III secretion protein (HpaP)	0.004

>gnl|CDD|176016 cd04051, C2_SRC2_like, C2 domain present in Soybean genes Regulated by Cold 2 (SRC2)-like proteins

 Score =  160 bits (407), Expect = 1e-49
 Identities = 60/135 (44%), Positives = 85/135 (62%), Gaps = 11/135 (8%)

Query: 6   ALDLNLISAKHLKDVHLISKMDVYAVVSISGDHTIKKQKVKSHVDRSGGSNPTWNFPIKF 65
            L++ +ISA+ LK+V+L  KM VYAVV I   H     K  + VDR GG+NPTWN  ++F
Sbjct: 1   TLEITIISAEDLKNVNLFGKMKVYAVVWIDPSH-----KQSTPVDRDGGTNPTWNETLRF 55

Query: 66  TFNQSLAQQNRLTLDFKIKSDGL-LGDKTVGEVIVPIKELLDSSSSSSSGDAKSMKFVTY 124
             ++ L QQ RL L  ++  +   LGDK +GEV VP+K+LLD +S +         F++Y
Sbjct: 56  PLDERLLQQGRLALTIEVYCERPSLGDKLIGEVRVPLKDLLDGASPAGELR-----FLSY 110

Query: 125 QVRSSSGKPKGELHF 139
           Q+R  SGKP+G L+F
Sbjct: 111 QLRRPSGKPQGVLNF 125

SRC2 production is a response to pathogen infiltration. The initial response of increased Ca2+ concentrations are coupled to downstream signal transduction pathways via calcium binding proteins. SRC2 contains a single C2 domain which localizes to the plasma membrane and is involved in Ca2+ dependent protein binding. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Length = 125

>gnl|CDD|214577 smart00239, C2, Protein kinase C conserved region 2 (CalB)

 Score = 65.6 bits (160), Expect = 1e-13
 Identities = 29/102 (28%), Positives = 47/102 (46%), Gaps = 9/102 (8%)

Query: 7   LDLNLISAKHLKDVHLISKMDVYAVVSISGDHTIKKQKVKSHVDRSGGSNPTWNFPIKFT 66
           L + +ISA++L       K D Y  VS+ GD    K+K K+ V ++   NP WN   +F 
Sbjct: 2   LTVKIISARNLPPKDKGGKSDPYVKVSLDGDP---KEKKKTKVVKNTL-NPVWNETFEFE 57

Query: 67  FNQSLAQQNRLTLDFKIKS-DGLLGDKTVGEVIVPIKELLDS 107
                       L+ ++   D    D  +G+V +P+ +LL  
Sbjct: 58  VPPPELA----ELEIEVYDKDRFGRDDFIGQVTIPLSDLLLG 95

Ca2+-binding motif present in phospholipases, protein kinases C, and synaptotagmins (among others). Some do not appear to contain Ca2+-binding sites. Particular C2s appear to bind phospholipids, inositol polyphosphates, and intracellular proteins. Unusual occurrence in perforin. Synaptotagmin and PLC C2s are permuted in sequence with respect to N- and C-terminal beta strands. SMART detects C2 domains using one or both of two profiles. Length = 101

>gnl|CDD|215765 pfam00168, C2, C2 domain

 Score = 62.7 bits (153), Expect = 9e-13
 Identities = 31/93 (33%), Positives = 42/93 (45%), Gaps = 9/93 (9%)

Query: 7  LDLNLISAKHLKDVHLISKMDVYAVVSISGDHTIKKQKVKSHVDRSGGSNPTWNFPIKFT 66
          L + +ISAK+L    L  K D Y  VS+ G    KK   K+ V +    NP WN    FT
Sbjct: 1  LRVTVISAKNLPPKDLNGKSDPYVKVSLGGQ---KKDTKKTKVVK-NTLNPVWNE--TFT 54

Query: 67 FNQSLAQQNRLTLDFKIK-SDGLLGDKTVGEVI 98
          F  +L +   L    ++   D    D  +GEV 
Sbjct: 55 FEVTLPELAELR--IEVYDYDRFGKDDFIGEVT 85

Length = 85

>gnl|CDD|176014 cd04049, C2_putative_Elicitor-responsive_gene, C2 domain present in the putative elicitor-responsive gene

 Score = 62.7 bits (153), Expect = 2e-12
 Identities = 32/101 (31%), Positives = 46/101 (45%), Gaps = 10/101 (9%)

Query: 7   LDLNLISAKHLKDVHLISKMDVYAVVSISGDHTIKKQKVKSHVDRSGGSNPTWNFPIKFT 66
           L++ LISAK L+D   + K+D Y ++        + Q+ KS V +  G NP WN   KF 
Sbjct: 3   LEVLLISAKGLQDTDFLGKIDPYVII------QCRTQERKSKVAKGDGRNPEWNE--KFK 54

Query: 67  FNQSLAQQNRLT-LDFKI-KSDGLLGDKTVGEVIVPIKELL 105
           F          T L  +I   D    D  +GE  + +K L 
Sbjct: 55  FTVEYPGWGGDTKLILRIMDKDNFSDDDFIGEATIHLKGLF 95

In plants elicitor-responsive proteins are triggered in response to specific elicitor molecules such as glycolproteins, peptides, carbohydrates and lipids. A host of defensive responses are also triggered resulting in localized cell death. Antimicrobial secondary metabolites, such as phytoalexins, or defense-related proteins, including pathogenesis-related (PR) proteins are also produced. There is a single C2 domain present here. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Members have a type-II topology. Length = 124

>gnl|CDD|175973 cd00030, C2, C2 domain

 Score = 61.7 bits (150), Expect = 2e-12
 Identities = 35/103 (33%), Positives = 49/103 (47%), Gaps = 11/103 (10%)

Query: 7   LDLNLISAKHLKDVHLISKMDVYAVVSISGDHTIKKQKVKSHVDRSGGSNPTWNFPIKFT 66
           L + +I A++L    L  K D Y  VS+ G     KQK K+ V +    NP WN    F 
Sbjct: 1   LRVTVIEARNLPAKDLNGKSDPYVKVSLGG-----KQKFKTKVVK-NTLNPVWNE--TFE 52

Query: 67  FNQSLAQQNRLTLDFKIK-SDGLLGDKTVGEVIVPIKELLDSS 108
           F     + + LT   ++   D    D  +GEV +P+ ELLDS 
Sbjct: 53  FPVLDPESDTLT--VEVWDKDRFSKDDFLGEVEIPLSELLDSG 93

The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Length = 102

>gnl|CDD|176009 cd04044, C2A_Tricalbin-like, C2 domain first repeat present in Tricalbin-like proteins

 Score = 57.6 bits (140), Expect = 1e-10
 Identities = 39/140 (27%), Positives = 59/140 (42%), Gaps = 22/140 (15%)

Query: 6   ALDLNLISAKHLKDVHLISK-MDVYAVVSISGDHTIKKQKVKSHVDRSGGSNPTWNFPIK 64
            L + + SA+ LK   +I   +D Y   SIS    + + KVK        SNP WN    
Sbjct: 3   VLAVTIKSARGLKGSDIIGGTVDPYVTFSISNRRELARTKVKKDT-----SNPVWNETKY 57

Query: 65  FTFNQSLAQQNRLTL-DFKIKSDGLLGDKTVGEVIVPIKELLDSSSSSSSGDAKSMKFVT 123
              N SL +   LT+ DF    +    DK +G     +  LL +            + +T
Sbjct: 58  ILVN-SLTEPLNLTVYDF----NDKRKDKLIGTAEFDLSSLLQNPE---------QENLT 103

Query: 124 YQVRSSSGKPKGELHFSYKF 143
             +  + GKP GEL++  +F
Sbjct: 104 KNLLRN-GKPVGELNYDLRF 122

5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the first C2 repeat, C2A, and has a type-II topology. Length = 124

>gnl|CDD|220392 pfam09770, PAT1, Topoisomerase II-associated protein PAT1

 Score = 54.8 bits (132), Expect = 2e-08
 Identities = 27/99 (27%), Positives = 32/99 (32%), Gaps = 3/99 (3%)

Query: 153 AKAGEPVTAYPAPMAAGSSSVPYAYPPPPQAGYGYPPPPPQGAAPNGAYPPQQPGYGYPP 212
             A + ++                 P PPQ       PP Q A P    P Q PGY  PP
Sbjct: 148 TPAQKMLSLEEVEAQLQQRQQAPQLPQPPQQVLPQGMPPRQAAFPQQGPPEQPPGYPQPP 207

Query: 213 PPPQQ---GYGYPPPPPQQGYGYPPPPPQQGYGYPPQQP 248
               +      + P P Q     P PP       P QQP
Sbjct: 208 QGHPEQVQPQQFLPAPSQAPAQPPLPPQLPQQPPPLQQP 246

Members of this family are necessary for accurate chromosome transmission during cell division. Length = 804

>gnl|CDD|223021 PHA03247, PHA03247, large tegument protein UL36; Provisional

 Score = 53.0 bits (127), Expect = 1e-07
 Identities = 35/168 (20%), Positives = 44/168 (26%), Gaps = 27/168 (16%)

Query: 144  SEPTVGKTHAKAGEPVTAYPAPMAAGSSSVPYAYPPPPQAGYGYPPPPPQGAAPNGAY-- 201
            ++P        A  P  A PA      +S     PPPP        P     AP G    
Sbjct: 2805 ADPPAAVLAPAAALPPAASPAGPLPPPTSAQPTAPPPPPGPPPPSLPLGGSVAPGGDVRR 2864

Query: 202  -------------------------PPQQPGYGYPPPPPQQGYGYPPPPPQQGYGYPPPP 236
                                        +    +  PP Q      P  P      P PP
Sbjct: 2865 RPPSRSPAAKPAAPARPPVRRLARPAVSRSTESFALPPDQPERPPQPQAPPPPQPQPQPP 2924

Query: 237  PQQGYGYPPQQPGYGYPPVKPAKKSNGGLGFGTGLLGGMLGGLLIGDI 284
            P      PP  P    PP+ P     G       +    LG L+ G +
Sbjct: 2925 PPPQPQPPPPPPPRPQPPLAPTTDPAGAGEPSGAVPQPWLGALVPGRV 2972

Length = 3151

>gnl|CDD|175974 cd00275, C2_PLC_like, C2 domain present in Phosphoinositide-specific phospholipases C (PLC)

 Score = 48.7 bits (117), Expect = 2e-07
 Identities = 27/101 (26%), Positives = 41/101 (40%), Gaps = 8/101 (7%)

Query: 7   LDLNLISAKHLKDVHLI--SKMDVYAVVSISGDHTIKKQKVKSHVDRSGGSNPTWNFPIK 64
           L + +IS + L        S +D Y  V I G       K K+ V ++ G NP WN   +
Sbjct: 4   LTIKIISGQQLPKPKGDKGSIVDPYVEVEIHGLPADDSAKFKTKVVKNNGFNPVWNETFE 63

Query: 65  FTFNQ-SLAQQNRLTLDFKIKSDGLLGDKTVGEVIVPIKEL 104
           F      LA      L F +  +    D  +G+  +P+  L
Sbjct: 64  FDVTVPELA-----FLRFVVYDEDSGDDDFLGQACLPLDSL 99

PLCs are involved in the hydrolysis of phosphatidylinositol-4,5-bisphosphate (PIP2) to d-myo-inositol-1,4,5-trisphosphate (1,4,5-IP3) and sn-1,2-diacylglycerol (DAG). 1,4,5-IP3 and DAG are second messengers in eukaryotic signal transduction cascades. PLC is composed of a N-terminal PH domain followed by a series of EF hands, a catalytic TIM barrel and a C-terminal C2 domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Members here have a type-II topology. Length = 128

>gnl|CDD|236090 PRK07764, PRK07764, DNA polymerase III subunits gamma and tau; Validated

 Score = 51.5 bits (124), Expect = 2e-07
 Identities = 34/116 (29%), Positives = 38/116 (32%), Gaps = 4/116 (3%)

Query: 147 TVGKTHAKAGEPVTAYPAPMAAGSSSVPYAYPPPPQAGYGYPPPPPQGAAPNGAYPPQQP 206
                 AKAG    A P P  A ++    A   P Q        PP G A + A  P Q 
Sbjct: 665 GGDGWPAKAGGAAPAAPPPAPAPAAPAAPAGAAPAQPAPAPAATPPAGQADDPAAQPPQA 724

Query: 207 GYGYPPPPPQQGYGYPPPP----PQQGYGYPPPPPQQGYGYPPQQPGYGYPPVKPA 258
             G   P P      P PP    P    G P  PP      P   P    PP  P+
Sbjct: 725 AQGASAPSPAADDPVPLPPEPDDPPDPAGAPAQPPPPPAPAPAAAPAAAPPPSPPS 780

Length = 824

>gnl|CDD|220392 pfam09770, PAT1, Topoisomerase II-associated protein PAT1

 Score = 51.7 bits (124), Expect = 3e-07
 Identities = 25/80 (31%), Positives = 25/80 (31%), Gaps = 9/80 (11%)

Query: 178 PPPPQAGYGYPPPPPQGAAPNGAYPPQQPGYGYPPPPPQQGYGYPPPPPQQGYGYP---- 233
           P    A    PP  PQ   P             PPPPPQ       PP  Q    P    
Sbjct: 223 PSQAPAQPPLPPQLPQQPPPLQQPQFPGLSQQMPPPPPQPPQQQQQPPQPQAQPPPQNQP 282

Query: 234 ---PPPPQQGYG--YPPQQP 248
              P  PQ       PPQQP
Sbjct: 283 TPHPGLPQGQNAPLPPPQQP 302

Members of this family are necessary for accurate chromosome transmission during cell division. Length = 804

>gnl|CDD|220392 pfam09770, PAT1, Topoisomerase II-associated protein PAT1

 Score = 51.3 bits (123), Expect = 3e-07
 Identities = 24/102 (23%), Positives = 27/102 (26%), Gaps = 6/102 (5%)

Query: 163 PAPMAAGSSSVPYAYPPPPQAGYGYPPPPPQGAAPNGAYPPQQPGYGYPPPPPQQ--GYG 220
                                  G P  PP    P   +P Q     + P P Q      
Sbjct: 172 LPQPPQQVLPQGMPPRQAAFPQQGPPEQPPGYPQPPQGHPEQVQPQQFLPAPSQAPAQPP 231

Query: 221 YPPPPPQQ----GYGYPPPPPQQGYGYPPQQPGYGYPPVKPA 258
            PP  PQQ         P   QQ    PPQ P     P +P 
Sbjct: 232 LPPQLPQQPPPLQQPQFPGLSQQMPPPPPQPPQQQQQPPQPQ 273

Members of this family are necessary for accurate chromosome transmission during cell division. Length = 804

>gnl|CDD|220392 pfam09770, PAT1, Topoisomerase II-associated protein PAT1

 Score = 50.5 bits (121), Expect = 6e-07
 Identities = 31/108 (28%), Positives = 33/108 (30%), Gaps = 11/108 (10%)

Query: 155 AGEPVTAYPAPMAAGSSSVPYAYPP-----PPQAGYGYPPPPPQGAAPNGAYPPQQPGYG 209
             +P    PAP  A +       PP     PP       P   Q   P    PPQQ    
Sbjct: 213 QVQPQQFLPAPSQAPA---QPPLPPQLPQQPPPLQQPQFPGLSQQMPPPPPQPPQQQQQP 269

Query: 210 YPP---PPPQQGYGYPPPPPQQGYGYPPPPPQQGYGYPPQQPGYGYPP 254
             P   PPPQ      P  PQ      PPP Q       QQP      
Sbjct: 270 PQPQAQPPPQNQPTPHPGLPQGQNAPLPPPQQPQLLPLVQQPQGQQRG 317

Members of this family are necessary for accurate chromosome transmission during cell division. Length = 804

>gnl|CDD|220392 pfam09770, PAT1, Topoisomerase II-associated protein PAT1

 Score = 49.4 bits (118), Expect = 1e-06
 Identities = 27/102 (26%), Positives = 30/102 (29%), Gaps = 8/102 (7%)

Query: 163 PAPMAAGSSSVPYAYPPPPQAGYGYPPPPPQGAAPNGAYPP----QQPGYGYPPPPPQQ- 217
           P  M    ++ P   PP    GY  PP           + P           PP  PQQ 
Sbjct: 181 PQGMPPRQAAFPQQGPPEQPPGYPQPPQGHPEQVQPQQFLPAPSQAPAQPPLPPQLPQQP 240

Query: 218 --GYGYPPPPPQQGYGYPPPPPQQGYGYPPQQPGYGYPPVKP 257
                   P   Q    PPP P Q    PPQ      PP   
Sbjct: 241 PPLQQPQFPGLSQQMPPPPPQPPQQQQQPPQPQAQP-PPQNQ 281

Members of this family are necessary for accurate chromosome transmission during cell division. Length = 804

>gnl|CDD|219321 pfam07174, FAP, Fibronectin-attachment protein (FAP)

 Score = 46.8 bits (111), Expect = 5e-06
 Identities = 30/88 (34%), Positives = 32/88 (36%)

Query: 153 AKAGEPVTAYPAPMAAGSSSVPYAYPPPPQAGYGYPPPPPQGAAPNGAYPPQQPGYGYPP 212
           A AG    A   P  A +   P   PP   A    P  PP    P     PQ       P
Sbjct: 22  AVAGASAVAIALPATANADPAPPPPPPSTAAAAPAPAAPPPPPPPAAPPAPQPDDPNAAP 81

Query: 213 PPPQQGYGYPPPPPQQGYGYPPPPPQQG 240
           PPP      PPPPP      PPP P+ G
Sbjct: 82  PPPPADPNAPPPPPVDPNAPPPPAPEPG 109

This family contains bacterial fibronectin-attachment proteins (FAP). Family members are rich in alanine and proline, are approximately 300 long, and seem to be restricted to mycobacteria. These proteins contain a fibronectin-binding motif that allows mycobacteria to bind to fibronectin in the extracellular matrix. Length = 297

>gnl|CDD|176015 cd04050, C2B_Synaptotagmin-like, C2 domain second repeat present in Synaptotagmin-like proteins

 Score = 43.7 bits (104), Expect = 8e-06
 Identities = 27/101 (26%), Positives = 42/101 (41%), Gaps = 25/101 (24%)

Query: 13  SAKHLKDVHLISKMDVYAVVSISGDHTIKKQKVKSHVDRSGGSNPTWNFPIKFTF----- 67
           SAK+L       +   Y  +++    T +K KVK   +     NP W     FTF     
Sbjct: 8   SAKNLPLAKSTKEPSPYVELTV--GKTTQKSKVKERTN-----NPVWE--EGFTFLVRNP 58

Query: 68  -NQSLAQQNRLTLDFKIKSDGLLGDKTVGEVIVPIKELLDS 107
            NQ         L+ ++K D     K++G + +P+ ELL  
Sbjct: 59  ENQ--------ELEIEVKDDK--TGKSLGSLTLPLSELLKE 89

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-I topology. Length = 105

>gnl|CDD|176063 cd08681, C2_fungal_Inn1p-like, C2 domain found in fungal Ingression 1 (Inn1) proteins

 Score = 43.8 bits (104), Expect = 9e-06
 Identities = 15/55 (27%), Positives = 26/55 (47%), Gaps = 6/55 (10%)

Query: 12 ISAKHLKDVHLISKMDVYAVVSISGDHTIKKQKVKSHVDRSGGSNPTWNFPIKFT 66
          + A++L +   + K D Y V+ I      KK    +  D  GG +P W+  ++F 
Sbjct: 8  LKARNLPNKRKLDKQDPYCVLRI--GGVTKK----TKTDFRGGQHPEWDEELRFE 56

Saccharomyces cerevisiae Inn1 associates with the contractile actomyosin ring at the end of mitosis and is needed for cytokinesis. The C2 domain of Inn1, located at the N-terminus, is required for ingression of the plasma membrane. The C-terminus is relatively unstructured and contains eight PXXP motifs that are thought to mediate interaction of Inn1 with other proteins with SH3 domains in the cytokinesis proteins Hof1 (an F-BAR protein) and Cyk3 (whose overexpression can restore primary septum formation in Inn1Delta cells) as well as recruiting Inn1 to the bud-neck by binding to Cyk3. Inn1 and Cyk3 appear to cooperate in activating chitin synthase Chs2 for primary septum formation, which allows coordination of actomyosin ring contraction with ingression of the cleavage furrow. It is thought that the C2 domain of Inn1 helps to preserve the link between the actomyosin ring and the plasma membrane, contributing both to membrane ingression, as well as to stability of the contracting ring. Additionally, Inn1 might induce curvature of the plasma membrane adjacent to the contracting ring, thereby promoting ingression of the membrane. It has been shown that the C2 domain of human synaptotagmin induces curvature in target membranes and thereby contributes to fusion of these membranes with synaptic vesicles. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Length = 118

>gnl|CDD|236090 PRK07764, PRK07764, DNA polymerase III subunits gamma and tau; Validated

 Score = 46.5 bits (111), Expect = 1e-05
 Identities = 31/115 (26%), Positives = 33/115 (28%), Gaps = 2/115 (1%)

Query: 144 SEPTVGKTHAKAGEPVTAYPAPMAAGSSSVPYAYPPPPQAGYGYPPPPPQGAAPNGAYPP 203
               V    A  G       A  AA ++  P   P  P A  G  P  P  A      PP
Sbjct: 653 HPKHVAVPDASDGGDGWPAKAGGAAPAAPPPAPAPAAPAAPAGAAPAQPAPAPAAT--PP 710

Query: 204 QQPGYGYPPPPPQQGYGYPPPPPQQGYGYPPPPPQQGYGYPPQQPGYGYPPVKPA 258
                     PPQ   G   P P      P PP       P   P    PP  PA
Sbjct: 711 AGQADDPAAQPPQAAQGASAPSPAADDPVPLPPEPDDPPDPAGAPAQPPPPPAPA 765

Length = 824

>gnl|CDD|219133 pfam06682, DUF1183, Protein of unknown function (DUF1183)

 Score = 45.9 bits (109), Expect = 1e-05
 Identities = 36/125 (28%), Positives = 43/125 (34%), Gaps = 23/125 (18%)

Query: 178 PPPPQAGYGYPPPPPQGAAPNGAYPPQQPGYGYPPPPPQQGYGYPPPPPQQGYGYPPPPP 237
           P P +AGYG       G    G       G G  PPPP     +PPP        P   P
Sbjct: 187 PRPERAGYG-------GGGGGGGGGGGGGGSGPGPPPPGFKSSFPPPYG------PGAGP 233

Query: 238 QQGYGYPPQQPGYGYPPVKPAKKSNGGLGFGTGLLGGMLGGLLIGDIVSDAADYDGDFGG 297
             GYG    + G G            G GF TGL  G   G L G   ++ + Y   +G 
Sbjct: 234 SSGYGSGGTRSGQG----------GWGPGFWTGLGAGGALGYLFGSRRNNNSSYGRSYGS 283

Query: 298 DFGGD 302
                
Sbjct: 284 GSPSY 288

This family consists of several eukaryotic proteins of around 360 residues in length. The function of this family is unknown. Length = 317

>gnl|CDD|236090 PRK07764, PRK07764, DNA polymerase III subunits gamma and tau; Validated

 Score = 45.7 bits (109), Expect = 2e-05
 Identities = 25/99 (25%), Positives = 28/99 (28%)

Query: 160 TAYPAPMAAGSSSVPYAYPPPPQAGYGYPPPPPQGAAPNGAYPPQQPGYGYPPPPPQQGY 219
              PA  A  +++   A  P P A        P  AA     P   P    P P      
Sbjct: 391 AGAPAAAAPSAAAAAPAAAPAPAAAAPAAAAAPAPAAAPQPAPAPAPAPAPPSPAGNAPA 450

Query: 220 GYPPPPPQQGYGYPPPPPQQGYGYPPQQPGYGYPPVKPA 258
           G  P PP        P P       P       PP  PA
Sbjct: 451 GGAPSPPPAAAPSAQPAPAPAAAPEPTAAPAPAPPAAPA 489

Length = 824

>gnl|CDD|219339 pfam07223, DUF1421, Protein of unknown function (DUF1421)

 Score = 45.3 bits (107), Expect = 2e-05
 Identities = 29/95 (30%), Positives = 31/95 (32%), Gaps = 7/95 (7%)

Query: 158 PVTAYPAPMAAGSSSVPYAYPPPPQAGYGYPPPPPQGAAPNGAYPPQQPGYGYPPPPPQQ 217
           P    P+ MA      PY+  PP Q  YG P P P      G  P      G  PPP Q 
Sbjct: 193 PNEPLPSSMAMQP---PYSGAPPSQQFYGPPQPSPYMYGGPGGRPNSGFPSGQQPPPSQG 249

Query: 218 GYGYPPPPPQQGYGYPPPPPQQGYGYPPQQPGYGY 252
             GY    P    G           Y PQ     Y
Sbjct: 250 QEGYGYSGPPPSKGNHGSVAS----YAPQGSSQSY 280

This family represents a conserved region approximately 350 residues long within a number of plant proteins of unknown function. Length = 357

>gnl|CDD|223065 PHA03378, PHA03378, EBNA-3B; Provisional

 Score = 45.8 bits (108), Expect = 2e-05
 Identities = 34/109 (31%), Positives = 35/109 (32%), Gaps = 9/109 (8%)

Query: 158 PVTAYPAPMAAGSSSVPYAYPPPPQAGYGYP-PPPPQGAAPNGAYPPQQPGYGYPPPPPQ 216
           P T  P P A      P A P   Q          P  AAP  A PP        PP   
Sbjct: 691 PGTMQPPPRAPTPMRPPAAPPGRAQRPAAATGRARPPAAAPGRARPPAAAPGRARPPAAA 750

Query: 217 QGYGYPP-------PPPQQGYGYPPP-PPQQGYGYPPQQPGYGYPPVKP 257
            G   PP        PP    G P P PP Q    P Q+P     P  P
Sbjct: 751 PGRARPPAAAPGRARPPAAAPGAPTPQPPPQAPPAPQQRPRGAPTPQPP 799

Length = 991

>gnl|CDD|236090 PRK07764, PRK07764, DNA polymerase III subunits gamma and tau; Validated

 Score = 45.0 bits (107), Expect = 3e-05
 Identities = 25/125 (20%), Positives = 27/125 (21%), Gaps = 1/125 (0%)

Query: 146 PTVGKTHAKAGEPVTAYPAPMAAGSSSVPYAYPPPPQAGYGYPPPPPQ-GAAPNGAYPPQ 204
              G     A  P  A  AP AA + +          A    P P P    AP    P  
Sbjct: 387 VAGGAGAPAAAAPSAAAAAPAAAPAPAAAAPAAAAAPAPAAAPQPAPAPAPAPAPPSPAG 446

Query: 205 QPGYGYPPPPPQQGYGYPPPPPQQGYGYPPPPPQQGYGYPPQQPGYGYPPVKPAKKSNGG 264
               G  P PP        P P       P             P              G 
Sbjct: 447 NAPAGGAPSPPPAAAPSAQPAPAPAAAPEPTAAPAPAPPAAPAPAAAPAAPAAPAAPAGA 506

Query: 265 LGFGT 269
               T
Sbjct: 507 DDAAT 511

Length = 824

>gnl|CDD|130689 TIGR01628, PABP-1234, polyadenylate binding protein, human types 1, 2, 3, 4 family

 Score = 45.2 bits (107), Expect = 3e-05
 Identities = 23/122 (18%), Positives = 29/122 (23%), Gaps = 17/122 (13%)

Query: 168 AGSSSVPYAYPPPPQAGYGYPPPPPQGAAPNGAYPPQQPGYGYPPPPPQQGY-------- 219
                +P   P     G     PP  G  P   +  Q  G+      P            
Sbjct: 380 PRMRQLPMGSPMGGAMG----QPPYYGQGPQQQFNGQPLGWPRMSMMPTPMGPGGPLRPN 435

Query: 220 GYPPPPPQQGYGY-----PPPPPQQGYGYPPQQPGYGYPPVKPAKKSNGGLGFGTGLLGG 274
           G  P    +            PP Q   YPP           P  +S    G     L  
Sbjct: 436 GLAPMNAVRAPSRNAQNAAQKPPMQPVMYPPNYQSLPLSQDLPQPQSTASQGGQNKKLAQ 495

Query: 275 ML 276
           +L
Sbjct: 496 VL 497

These eukaryotic proteins recognize the poly-A of mRNA and consists of four tandem RNA recognition domains at the N-terminus (rrm: pfam00076) followed by a PABP-specific domain (pfam00658) at the C-terminus. The protein is involved in the transport of mRNA's from the nucleus to the cytoplasm. There are four paralogs in Homo sapiens which are expressed in testis (GP:11610605_PABP3 ), platelets (SP:Q13310_PABP4 ), broadly expressed (SP:P11940_PABP1) and of unknown tissue range (SP:Q15097_PABP2). Length = 562

>gnl|CDD|175988 cd04021, C2_E3_ubiquitin_ligase, C2 domain present in E3 ubiquitin ligase

 Score = 42.6 bits (101), Expect = 3e-05
 Identities = 31/97 (31%), Positives = 42/97 (43%), Gaps = 25/97 (25%)

Query: 7  LDLNLISAKHLKDVHLISKMDVYAVVSISGDHTIKKQKVKSHVDRSGGSNPTWNFPIKFT 66
          L + + SAK LK      K D Y  V++ G    K +  K        SNP WN    FT
Sbjct: 4  LQITVESAK-LKSNSKSFKPDPYVEVTVDGQPPKKTEVSKKT------SNPKWNEH--FT 54

Query: 67 FN---QSLAQQNRLTLDFK------IKSDGLLGDKTV 94
               QS       TL+FK      +K+D LLG+ ++
Sbjct: 55 VLVTPQS-------TLEFKVWSHHTLKADVLLGEASL 84

E3 ubiquitin ligase is part of the ubiquitylation mechanism responsible for controlling surface expression of membrane proteins. The sequential action of several enzymes are involved: ubiquitin-activating enzyme E1, ubiquitin-conjugating enzyme E2, and ubiquitin-protein ligase E3 which is responsible for substrate recognition and promoting the transfer of ubiquitin to the target protein. E3 ubiquitin ligase is composed of an N-terminal C2 domain, 4 WW domains, and a HECTc domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Length = 125

>gnl|CDD|218191 pfam04652, DUF605, Vta1 like

 Score = 44.7 bits (106), Expect = 3e-05
 Identities = 21/97 (21%), Positives = 25/97 (25%), Gaps = 5/97 (5%)

Query: 163 PAPMAAGSSSVPYAYPPPPQAGYGYPPP-----PPQGAAPNGAYPPQQPGYGYPPPPPQQ 217
            +   +   S     P  P        P     PP  ++     PP  P     P PP  
Sbjct: 180 ASASPSDPPSSSPGVPSFPSPPEDPSSPSDSSLPPAPSSFQSDTPPPSPESPTNPSPPPG 239

Query: 218 GYGYPPPPPQQGYGYPPPPPQQGYGYPPQQPGYGYPP 254
               PPPP QQ        P          P  G   
Sbjct: 240 PAAPPPPPVQQVPPLSTAKPTPPSASATPAPIGGITL 276

Vta1 (VPS20-associated protein 1) is a positive regulator of Vps4. Vps4 is an ATPase that is required in the multivesicular body (MVB) sorting pathway to dissociate the endosomal sorting complex required for transport (ESCRT). Vta1 promotes correct assembly of Vps4 and stimulates its ATPase activity through its conserved Vta1/SBP1/LIP5 region. Length = 315

>gnl|CDD|223065 PHA03378, PHA03378, EBNA-3B; Provisional

 Score = 44.7 bits (105), Expect = 4e-05
 Identities = 34/101 (33%), Positives = 37/101 (36%), Gaps = 6/101 (5%)

Query: 155 AGEPVTAYPAPMAAGSSSVPYAYPPPPQAGYGYP-PPPPQGAAPNGAYPPQQPGYGYPPP 213
           A  P  A     A G +  P A P   +     P    P  AAP  A PP        PP
Sbjct: 708 AAPPGRAQRPAAATGRARPPAAAPGRARPPAAAPGRARPPAAAPGRARPPAAAPGRARPP 767

Query: 214 PPQQGYGYPPPPPQQGYGYPPPPPQQGYGYP-PQQPGYGYP 253
               G   P PPPQ     PP P Q+  G P PQ P    P
Sbjct: 768 AAAPGAPTPQPPPQA----PPAPQQRPRGAPTPQPPPQAGP 804

Length = 991

>gnl|CDD|176017 cd04052, C2B_Tricalbin-like, C2 domain second repeat present in Tricalbin-like proteins

 Score = 41.8 bits (99), Expect = 4e-05
 Identities = 17/82 (20%), Positives = 36/82 (43%), Gaps = 12/82 (14%)

Query: 29  YAVVSISGDHTIKKQKVKSHVDRSGGSNPTWNFPI-KFTFNQSLAQQNRLTLDFKIKSDG 87
           YA + ++G   +   +VK        +NP+WN        ++  +      +   +K D 
Sbjct: 16  YAELYLNGK-LVYTTRVKKKT-----NNPSWNASTEFLVTDRRKS-----RVTVVVKDDR 64

Query: 88  LLGDKTVGEVIVPIKELLDSSS 109
              D  +G V + + +L+D++S
Sbjct: 65  DRHDPVLGSVSISLNDLIDATS 86

5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-II topology. Length = 111

>gnl|CDD|220392 pfam09770, PAT1, Topoisomerase II-associated protein PAT1

 Score = 44.4 bits (105), Expect = 5e-05
 Identities = 26/100 (26%), Positives = 28/100 (28%), Gaps = 11/100 (11%)

Query: 162 YPAPMAAGSSSVPYAYPPPPQAGYGYPPPPPQGAAPNGAYPPQQPGYGYP-------PPP 214
            P P        P   P  P      PPPPPQ        PPQ      P       P  
Sbjct: 230 PPLPPQLPQQPPPLQQPQFPGLSQQMPPPPPQ-PPQQQQQPPQPQAQPPPQNQPTPHPGL 288

Query: 215 PQQGYGYPPPPPQQGY---GYPPPPPQQGYGYPPQQPGYG 251
           PQ      PPP Q         P   Q+G  +  Q     
Sbjct: 289 PQGQNAPLPPPQQPQLLPLVQQPQGQQRGPQFREQLVQLS 328

Members of this family are necessary for accurate chromosome transmission during cell division. Length = 804

>gnl|CDD|235124 PRK03427, PRK03427, cell division protein ZipA; Provisional

 Score = 43.5 bits (103), Expect = 6e-05
 Identities = 32/125 (25%), Positives = 38/125 (30%), Gaps = 3/125 (2%)

Query: 135 GELHFSYKFSEPTVGKTHAKAGE-PVTAYPAPMAAGSSSVPYAYPPPPQAGYGYPPPPPQ 193
           GE+        P   + H  A   P   Y  P A+     P   PP  Q    + P P Q
Sbjct: 64  GEVRVHRVNHAPANAQEHEAARPSPQHQYQPPYASAQPRQPVQQPPEAQVPPQHAPRPAQ 123

Query: 194 GAAPNGAYPPQQPGYGYPPPPPQQGYGYPPPPPQQGYGYPPPPPQQGYGYPPQQPGYGYP 253
            A      P  QP    P   P        P PQ  +  P P  Q      P       P
Sbjct: 124 PAPQPVQQPAYQPQPEQPLQQPVS--PQVAPAPQPVHSAPQPAQQAFQPAEPVAAPQPEP 181

Query: 254 PVKPA 258
             +PA
Sbjct: 182 VAEPA 186

Length = 333

>gnl|CDD|237871 PRK14965, PRK14965, DNA polymerase III subunits gamma and tau; Provisional

 Score = 44.0 bits (104), Expect = 7e-05
 Identities = 19/72 (26%), Positives = 21/72 (29%), Gaps = 5/72 (6%)

Query: 178 PPPPQAGYGYPPPPPQGAAPNGAYPPQQPGYGYPPPPPQQGYGYPPPPPQQGYGYPPPPP 237
           P PP A +G P P    A P  A PP       P  P +     P P P       PP  
Sbjct: 382 PAPPSAAWGAPTPAAPAAPPPAAAPPVP-----PAAPARPAAARPAPAPAPPAAAAPPAR 436

Query: 238 QQGYGYPPQQPG 249
                       
Sbjct: 437 SADPAAAASAGD 448

Length = 576

>gnl|CDD|236090 PRK07764, PRK07764, DNA polymerase III subunits gamma and tau; Validated

 Score = 43.8 bits (104), Expect = 8e-05
 Identities = 24/97 (24%), Positives = 28/97 (28%), Gaps = 1/97 (1%)

Query: 144 SEPTVGKTHAKAGEPVTAYPAPMAAGSSSVPYAYPPPPQAGYGYPPPPPQGAAPNGAYPP 203
                    A   +P  A  A   AG +  P A PP    G   P P      P    P 
Sbjct: 687 PAAPAAPAGAAPAQPAPAPAATPPAGQADDPAAQPPQAAQGASAPSPAADDPVPLPPEPD 746

Query: 204 QQP-GYGYPPPPPQQGYGYPPPPPQQGYGYPPPPPQQ 239
             P   G P  PP      P   P       PP  ++
Sbjct: 747 DPPDPAGAPAQPPPPPAPAPAAAPAAAPPPSPPSEEE 783

Length = 824

>gnl|CDD|218191 pfam04652, DUF605, Vta1 like

 Score = 43.1 bits (102), Expect = 8e-05
 Identities = 21/79 (26%), Positives = 28/79 (35%)

Query: 167 AAGSSSVPYAYPPPPQAGYGYPPPPPQGAAPNGAYPPQQPGYGYPPPPPQQGYGYPPPPP 226
           A  +S+ P   P        +P PP   ++P+ +  P  P       PP        P P
Sbjct: 177 ADPASASPSDPPSSSPGVPSFPSPPEDPSSPSDSSLPPAPSSFQSDTPPPSPESPTNPSP 236

Query: 227 QQGYGYPPPPPQQGYGYPP 245
             G   PPPPP Q      
Sbjct: 237 PPGPAAPPPPPVQQVPPLS 255

Vta1 (VPS20-associated protein 1) is a positive regulator of Vps4. Vps4 is an ATPase that is required in the multivesicular body (MVB) sorting pathway to dissociate the endosomal sorting complex required for transport (ESCRT). Vta1 promotes correct assembly of Vps4 and stimulates its ATPase activity through its conserved Vta1/SBP1/LIP5 region. Length = 315

>gnl|CDD|236090 PRK07764, PRK07764, DNA polymerase III subunits gamma and tau; Validated

 Score = 43.1 bits (102), Expect = 1e-04
 Identities = 18/95 (18%), Positives = 21/95 (22%), Gaps = 1/95 (1%)

Query: 155 AGEPVTAYPAPMAAGSSSVPYAYPPPP-QAGYGYPPPPPQGAAPNGAYPPQQPGYGYPPP 213
              P     A  A  + +     P          PP   QGA+               P 
Sbjct: 687 PAAPAAPAGAAPAQPAPAPAATPPAGQADDPAAQPPQAAQGASAPSPAADDPVPLPPEPD 746

Query: 214 PPQQGYGYPPPPPQQGYGYPPPPPQQGYGYPPQQP 248
            P    G P  PP      P   P       P   
Sbjct: 747 DPPDPAGAPAQPPPPPAPAPAAAPAAAPPPSPPSE 781

Length = 824

>gnl|CDD|235124 PRK03427, PRK03427, cell division protein ZipA; Provisional

 Score = 42.7 bits (101), Expect = 1e-04
 Identities = 21/97 (21%), Positives = 23/97 (23%), Gaps = 1/97 (1%)

Query: 161 AYPAPMAAGSSSVPYAYPPPPQAGYGYPPP-PPQGAAPNGAYPPQQPGYGYPPPPPQQGY 219
           A P                 P+     P P       P    P QQP      P PQ  +
Sbjct: 99  AQPRQPVQQPPEAQVPPQHAPRPAQPAPQPVQQPAYQPQPEQPLQQPVSPQVAPAPQPVH 158

Query: 220 GYPPPPPQQGYGYPPPPPQQGYGYPPQQPGYGYPPVK 256
             P P  Q      P    Q        P    P  K
Sbjct: 159 SAPQPAQQAFQPAEPVAAPQPEPVAEPAPVMDKPKRK 195

Length = 333

>gnl|CDD|236669 PRK10263, PRK10263, DNA translocase FtsK; Provisional

 Score = 43.5 bits (102), Expect = 1e-04
 Identities = 28/117 (23%), Positives = 36/117 (30%), Gaps = 4/117 (3%)

Query: 145 EPTVGKTHAKAGEPVTAYPAPMAAGSSSVPYAYPP----PPQAGYGYPPPPPQGAAPNGA 200
            P      ++  +P   Y  P+          Y P    P Q  Y  P P      P  A
Sbjct: 376 APEGYPQQSQYAQPAVQYNEPLQQPVQPQQPYYAPAAEQPAQQPYYAPAPEQPAQQPYYA 435

Query: 201 YPPQQPGYGYPPPPPQQGYGYPPPPPQQGYGYPPPPPQQGYGYPPQQPGYGYPPVKP 257
             P+QP  G      +Q   + P    Q       P  Q   Y   QP    P V+P
Sbjct: 436 PAPEQPVAGNAWQAEEQQSTFAPQSTYQTEQTYQQPAAQEPLYQQPQPVEQQPVVEP 492

Length = 1355

>gnl|CDD|220392 pfam09770, PAT1, Topoisomerase II-associated protein PAT1

 Score = 42.8 bits (101), Expect = 2e-04
 Identities = 26/123 (21%), Positives = 28/123 (22%), Gaps = 30/123 (24%)

Query: 163 PAPMAAGSSSVPYAYPPPPQAGYGYPPPPPQG--------------AAPNGAYPPQQPGY 208
             P  +   + P   P PPQA    P P                          PQ P  
Sbjct: 119 LQPDPSLWGTAPKPEPQPPQAPESQPQPQTPAQKMLSLEEVEAQLQQRQQAPQLPQPPQQ 178

Query: 209 GYP---PPPPQQGYGYPPPPPQQGYGYPPPPPQQGYGY----------PPQQPGYGYPPV 255
             P   PP         PP    GY   P PPQ                        PP 
Sbjct: 179 VLPQGMPPRQAAFPQQGPPEQPPGY---PQPPQGHPEQVQPQQFLPAPSQAPAQPPLPPQ 235

Query: 256 KPA 258
            P 
Sbjct: 236 LPQ 238

Members of this family are necessary for accurate chromosome transmission during cell division. Length = 804

>gnl|CDD|223021 PHA03247, PHA03247, large tegument protein UL36; Provisional

 Score = 42.6 bits (100), Expect = 2e-04
 Identities = 25/118 (21%), Positives = 27/118 (22%), Gaps = 3/118 (2%)

Query: 144  SEPTVGKTHAKAGEPVTAYPAPMAAGSSSVPYAYPPPPQAGYGYPPP---PPQGAAPNGA 200
              P+          P T  P        +      P      G       PPQ      A
Sbjct: 2629 PSPSPAANEPDPHPPPTVPPPERPRDDPAPGRVSRPRRARRLGRAAQASSPPQRPRRRAA 2688

Query: 201  YPPQQPGYGYPPPPPQQGYGYPPPPPQQGYGYPPPPPQQGYGYPPQQPGYGYPPVKPA 258
             P          PPP      P P         PP P       P  P    PP  PA
Sbjct: 2689 RPTVGSLTSLADPPPPPPTPEPAPHALVSATPLPPGPAAARQASPALPAAPAPPAVPA 2746

Length = 3151

>gnl|CDD|236090 PRK07764, PRK07764, DNA polymerase III subunits gamma and tau; Validated

 Score = 42.3 bits (100), Expect = 2e-04
 Identities = 22/111 (19%), Positives = 25/111 (22%), Gaps = 6/111 (5%)

Query: 144 SEPTVGKTHAKAGEPVTAYPAPMAAGSSSVPYAYPPPPQAGYGYPPPPPQGAAPNGAYPP 203
           +E +       A          +   S            A    PPP P  AAP      
Sbjct: 637 AEASAAPAPGVAAPEHHPKHVAVPDASDGGDGWPAKAGGAAPAAPPPAPAPAAPAAPAG- 695

Query: 204 QQPGYGYPPPPPQQGYGYPPPPPQQGYGYPPPPPQQGYGYPPQQPGYGYPP 254
             P    P P        PP          PP   QG   P        P 
Sbjct: 696 AAPAQPAPAPAAT-----PPAGQADDPAAQPPQAAQGASAPSPAADDPVPL 741

Length = 824

>gnl|CDD|236090 PRK07764, PRK07764, DNA polymerase III subunits gamma and tau; Validated

 Score = 42.3 bits (100), Expect = 2e-04
 Identities = 23/112 (20%), Positives = 29/112 (25%), Gaps = 2/112 (1%)

Query: 153 AKAGEPVTAYPAPMAAGSSSVPYAYPPPPQAGYGYPPPPPQGAAPNGAYPPQQPGYGYPP 212
           A    P    PA  AA  +    A  P   A   +P       A +G      P      
Sbjct: 619 AAPAAPAAPAPAGAAAAPAEASAAPAPGVAAPEHHPKHVAVPDASDGGDG--WPAKAGGA 676

Query: 213 PPPQQGYGYPPPPPQQGYGYPPPPPQQGYGYPPQQPGYGYPPVKPAKKSNGG 264
            P        P  P    G  P  P       P       P  +P + + G 
Sbjct: 677 APAAPPPAPAPAAPAAPAGAAPAQPAPAPAATPPAGQADDPAAQPPQAAQGA 728

Length = 824

>gnl|CDD|236090 PRK07764, PRK07764, DNA polymerase III subunits gamma and tau; Validated

 Score = 42.3 bits (100), Expect = 2e-04
 Identities = 25/116 (21%), Positives = 27/116 (23%), Gaps = 1/116 (0%)

Query: 144 SEPTVGKTHAKAGEPVTAYPAPMAAGSSSVPYAYPPPPQAGYGYPPPPPQGAAPNGAYPP 203
           + P      A AG       A  A         + P   A            A  G   P
Sbjct: 619 AAPAAPAAPAPAGAAAAPAEASAAPAPGVAAPEHHPKHVAVPDASDGGDGWPAKAGGAAP 678

Query: 204 QQPGYGYPPPPPQQGYGYPPPPPQQGYGYPPPPPQ-QGYGYPPQQPGYGYPPVKPA 258
             P     P  P    G  P  P       PP  Q       P Q   G     PA
Sbjct: 679 AAPPPAPAPAAPAAPAGAAPAQPAPAPAATPPAGQADDPAAQPPQAAQGASAPSPA 734

Length = 824

>gnl|CDD|236669 PRK10263, PRK10263, DNA translocase FtsK; Provisional

 Score = 42.8 bits (100), Expect = 2e-04
 Identities = 25/104 (24%), Positives = 35/104 (33%), Gaps = 3/104 (2%)

Query: 157 EPVTAYPAPMAAGSSSVPYAYPPPPQAG-YGYPPPPPQGAAPNGAYPPQQPGYGYPPPPP 215
           +P   Y AP A   +  PY  P P Q     Y  P P+      A+  ++    + P   
Sbjct: 402 QPQQPYYAPAAEQPAQQPYYAPAPEQPAQQPYYAPAPEQPVAGNAWQAEEQQSTFAPQST 461

Query: 216 QQGYGYPPPPPQQGYGYPPPPPQQGYGYPPQQPGYGYPPVKPAK 259
            Q       P  Q   Y  P P +       +P       KPA+
Sbjct: 462 YQTEQTYQQPAAQEPLYQQPQPVEQQPVVEPEP--VVEETKPAR 503

Length = 1355

>gnl|CDD|176040 cd08394, C2A_Munc13, C2 domain first repeat in Munc13 (mammalian uncoordinated) proteins

 Score = 40.1 bits (94), Expect = 2e-04
 Identities = 25/71 (35%), Positives = 33/71 (46%), Gaps = 9/71 (12%)

Query: 39  TIKKQKVKSHVDRSGGSNPTWNFPIKFTFNQSLAQQNRLTLDFKIK--SDGLLGDKTVGE 96
           T+K Q VKS      GS P W     F F     + NRL L   I+  + GL+ D  VG 
Sbjct: 25  TLKVQNVKSTTIAVRGSQPCWE--QDFMF-----EINRLDLGLVIELWNKGLIWDTLVGT 77

Query: 97  VIVPIKELLDS 107
           V +P+  +  S
Sbjct: 78  VWIPLSTIRQS 88

C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrevin, and synaptotagmin suggesting a role for these as scaffolding proteins. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the first C2 repeat, C2A, and has a type-II topology. Length = 127

>gnl|CDD|222095 pfam13388, DUF4106, Protein of unknown function (DUF4106)

 Score = 42.0 bits (98), Expect = 3e-04
 Identities = 18/67 (26%), Positives = 22/67 (32%), Gaps = 4/67 (5%)

Query: 184 GYGYPPPPPQGAAPNGAYPPQQPGYGYPPPPPQQGYGYPPPPPQQGYGYPPPPPQQGYGY 243
           G+ +   P     P    P QQP    P   PQQ     P  P Q      P  Q     
Sbjct: 194 GHRHRHAPKPTQQPTVQNPAQQPTVQNPAQQPQQQPQQQPVQPAQQPTPQNPAQQP---- 249

Query: 244 PPQQPGY 250
           P  + G+
Sbjct: 250 PQTEQGH 256

This family of proteins are found in large numbers in the Trichomonas vaginalis proteome. The function of this protein is unknown. Length = 422

>gnl|CDD|222579 pfam14179, YppG, YppG-like protein

 Score = 39.3 bits (92), Expect = 3e-04
 Identities = 22/79 (27%), Positives = 25/79 (31%), Gaps = 2/79 (2%)

Query: 192 PQGAAPNGAYPPQQPGYGYPPPPPQQGY-GYPPPPPQQGYGYPPPPPQQGYGYPPQQPGY 250
            Q          QQ  Y   P   Q     Y PP  QQG+  PP P       P QQ   
Sbjct: 4   QQNTNQYPPQNQQQQPYQQQPYHQQMPPPPYSPPQQQQGHFMPPQPQPYPKQSPQQQQPP 63

Query: 251 GYPPVKPA-KKSNGGLGFG 268
            +       K S+G   F 
Sbjct: 64  QFSSFLSQFKNSDGTFDFN 82

The YppG-like protein family includes the B. subtilis YppG protein, which is functionally uncharacterized. This family of proteins is found in bacteria. Proteins in this family are typically between 115 and 181 amino acids in length. There are two completely conserved residues (F and G) that may be functionally important. Length = 110

>gnl|CDD|220708 pfam10349, WWbp, WW-domain ligand protein

 Score = 38.9 bits (91), Expect = 4e-04
 Identities = 26/78 (33%), Positives = 28/78 (35%), Gaps = 5/78 (6%)

Query: 176 AYPPPPQAGYGYPPPPPQGAAPNGAYPPQQPGYGYPPPPPQQGYGYPPPPPQQGYGYPPP 235
               P     GY PPP         +    P YG    PP  G   P  P   G    PP
Sbjct: 35  QRAQPVSRESGYYPPPGAYV-----HLEPLPAYGQYAAPPPYGPPPPYYPAPPGVYPTPP 89

Query: 236 PPQQGYGYPPQQPGYGYP 253
           PP  GY   PQ+P   YP
Sbjct: 90  PPNSGYMADPQEPPPPYP 107

The WWbp domain is characterized by several short PY and PT-like motifs of the PPPPY form. These appear to bind directly to the WW domains of WWP1 and WWP2 and other such diverse proteins as dystrophin and YAP (Yes-associated protein). This is the WW-domain binding protein WWbp via PY and PY_like motifs. The presence of a phosphotyrosine residue in the pWBP-1 peptide abolishes WW domain binding which suggests a potential regulatory role for tyrosine phosphorylation in modulating WW domain-ligand interactions. Given the likelihood that WWP1 and WWP2 function as E3 ubiquitin-protein ligases, it is possible that initial substrate-specific recognition occurs via WW domain-substrate protein interaction followed by ubiquitin transfer and subsequent proteolysis. This domain lies just downstream of the GRAM (pfam02893) in many members. Length = 111

>gnl|CDD|237865 PRK14951, PRK14951, DNA polymerase III subunits gamma and tau; Provisional

 Score = 41.6 bits (98), Expect = 4e-04
 Identities = 22/97 (22%), Positives = 26/97 (26%), Gaps = 4/97 (4%)

Query: 153 AKAGEPVTAY-PAPMAAGSSSVPYAYPPPPQAGYGYPPPPPQGAAPNGAYPPQQPGYGYP 211
           A A     A  PAP AA +++      PP  A       P   A               P
Sbjct: 390 AAAPVAQAAAAPAPAAAPAAAASAPAAPPAAAPPAPVAAPAAAAPAAAPAAAPAAVALAP 449

Query: 212 PPPPQQGYGYPPPPPQQGYGYPPPPPQQGYGYPPQQP 248
            PP Q        P +     P P        P   P
Sbjct: 450 APPAQAAPETVAIPVRVA---PEPAVASAAPAPAAAP 483

Length = 618

>gnl|CDD|237605 PRK14086, dnaA, chromosomal replication initiation protein; Provisional

 Score = 41.3 bits (97), Expect = 4e-04
 Identities = 35/155 (22%), Positives = 45/155 (29%), Gaps = 29/155 (18%)

Query: 126 VRSSSGKPKGELHFSYKFSEPTVGKTHAKAGEPVTAYPAPMAAGSSSVPYAYPPPPQAGY 185
           V  S+G+P      + + SEP   +       P   Y  P A             P A  
Sbjct: 88  VDPSAGEPAPPPPHARRTSEP---ELPRPGRRPYEGYGGPRADDRPPGLPRQDQLPTARP 144

Query: 186 GYP---PPPPQGAAPNGA--YPPQQPGYGYPPP---------PPQQGYGYPPPP---PQQ 228
            YP     P  GA P  A  Y  QQ   G+PP           P+Q     P     P+ 
Sbjct: 145 AYPAYQQRPEPGAWPRAADDYGWQQQRLGFPPRAPYASPASYAPEQERDREPYDAGRPEY 204

Query: 229 GYGYPP---------PPPQQGYGYPPQQPGYGYPP 254
                           P +     P   PG G+  
Sbjct: 205 DQRRRDYDHPRPDWDRPRRDRTDRPEPPPGAGHVH 239

Length = 617

>gnl|CDD|237605 PRK14086, dnaA, chromosomal replication initiation protein; Provisional

 Score = 41.3 bits (97), Expect = 4e-04
 Identities = 25/95 (26%), Positives = 32/95 (33%), Gaps = 16/95 (16%)

Query: 174 PYAYPPPPQAGYGYPPPPPQGAAPNGAYPPQQPGYGYP-------PPPPQQGYGYPPPPP 226
           P A  P P      PP   + + P    P ++P  GY        PP   +    P   P
Sbjct: 90  PSAGEPAPP-----PPHARRTSEPELPRPGRRPYEGYGGPRADDRPPGLPRQDQLPTARP 144

Query: 227 ----QQGYGYPPPPPQQGYGYPPQQPGYGYPPVKP 257
                Q    P   P+    Y  QQ   G+PP  P
Sbjct: 145 AYPAYQQRPEPGAWPRAADDYGWQQQRLGFPPRAP 179

Length = 617

>gnl|CDD|220708 pfam10349, WWbp, WW-domain ligand protein

 Score = 38.5 bits (90), Expect = 5e-04
 Identities = 27/79 (34%), Positives = 27/79 (34%), Gaps = 4/79 (5%)

Query: 168 AGSSSVPYAYPPPPQAGYGYPPPPPQGAAPNGAYPPQQPGYGYPPPPPQQGYGYPPPPPQ 227
           A   S    Y PPP A     P P  G        P   G   P  P   G    PPPP 
Sbjct: 37  AQPVSRESGYYPPPGAYVHLEPLPAYG----QYAAPPPYGPPPPYYPAPPGVYPTPPPPN 92

Query: 228 QGYGYPPPPPQQGYGYPPQ 246
            GY   P  P   Y  PPQ
Sbjct: 93  SGYMADPQEPPPPYPGPPQ 111

The WWbp domain is characterized by several short PY and PT-like motifs of the PPPPY form. These appear to bind directly to the WW domains of WWP1 and WWP2 and other such diverse proteins as dystrophin and YAP (Yes-associated protein). This is the WW-domain binding protein WWbp via PY and PY_like motifs. The presence of a phosphotyrosine residue in the pWBP-1 peptide abolishes WW domain binding which suggests a potential regulatory role for tyrosine phosphorylation in modulating WW domain-ligand interactions. Given the likelihood that WWP1 and WWP2 function as E3 ubiquitin-protein ligases, it is possible that initial substrate-specific recognition occurs via WW domain-substrate protein interaction followed by ubiquitin transfer and subsequent proteolysis. This domain lies just downstream of the GRAM (pfam02893) in many members. Length = 111

>gnl|CDD|237864 PRK14950, PRK14950, DNA polymerase III subunits gamma and tau; Provisional

 Score = 40.9 bits (96), Expect = 5e-04
 Identities = 23/94 (24%), Positives = 29/94 (30%), Gaps = 6/94 (6%)

Query: 146 PTVGKTHAKAGEPVTAYPAPMAAGSSSVPYAYPPPPQAGYGYPPPPPQGAAPNGAYPPQQ 205
           P   K  A A  PV   PAP  +       A   PP+        PP       A P   
Sbjct: 366 PQPAKPTAAAPSPVRPTPAP--STRPKAAAAANIPPKEPVRETATPPPVPPRPVAPPVPH 423

Query: 206 PGYGYPPPPPQQGYGYPPPPPQQGYGYPPPPPQQ 239
                P   P+      P   +  Y  P PP ++
Sbjct: 424 T----PESAPKLTRAAIPVDEKPKYTPPAPPKEE 453

Length = 585

>gnl|CDD|219339 pfam07223, DUF1421, Protein of unknown function (DUF1421)

 Score = 40.7 bits (95), Expect = 7e-04
 Identities = 25/93 (26%), Positives = 27/93 (29%), Gaps = 5/93 (5%)

Query: 170 SSSVPYAYPPPPQAGYGYPPPPPQGAAPNGAYPP-QQPGYGYPPPPPQQGYGYPPPPPQQ 228
                 + P          P  PQ   PN   P        Y   PP Q +  PP P   
Sbjct: 166 PPPQAQSAPQVSGLYPEESPYQPQSYPPNEPLPSSMAMQPPYSGAPPSQQFYGPPQPSPY 225

Query: 229 GYGYPPPPP----QQGYGYPPQQPGYGYPPVKP 257
            YG P   P      G   PP Q   GY    P
Sbjct: 226 MYGGPGGRPNSGFPSGQQPPPSQGQEGYGYSGP 258

This family represents a conserved region approximately 350 residues long within a number of plant proteins of unknown function. Length = 357

>gnl|CDD|237865 PRK14951, PRK14951, DNA polymerase III subunits gamma and tau; Provisional

 Score = 40.9 bits (96), Expect = 7e-04
 Identities = 25/109 (22%), Positives = 28/109 (25%), Gaps = 6/109 (5%)

Query: 150 KTHAKAGEPVTAYPAPMAAGSSSVPYAYPPPPQAGYGYPPPPPQGAAPNGAYPPQQPGYG 209
           K  A A     A     A   ++ P A P    A    P   P  AA   A PP      
Sbjct: 365 KPAAAAEAAAPAEKKTPARPEAAAPAAAPVAQAAAAPAPAAAPAAAASAPAAPPAAA--- 421

Query: 210 YPPPPPQQGYGYPPPPPQQGYGYPPPPPQQGYGYPPQQPGYGYPPVKPA 258
            P P        P   P      P              P     PV+ A
Sbjct: 422 PPAPVAAPAAAAPAAAPAAA---PAAVALAPAPPAQAAPETVAIPVRVA 467

Length = 618

>gnl|CDD|237865 PRK14951, PRK14951, DNA polymerase III subunits gamma and tau; Provisional

 Score = 40.9 bits (96), Expect = 7e-04
 Identities = 21/92 (22%), Positives = 24/92 (26%), Gaps = 9/92 (9%)

Query: 153 AKAGEPVTAYPAPMAAGSSSVPYAYPPPPQ-----AGYGYPPPPPQGAAPNGAYPPQQPG 207
           A A  P  A  A  +A ++    A P P       A    P   P   A   A P Q   
Sbjct: 398 AAAPAPAAAPAAAASAPAAPPAAAPPAPVAAPAAAAPAAAPAAAPAAVALAPAPPAQAAP 457

Query: 208 YGYPPPPPQQGYGYPPPPPQQGYGYPPPPPQQ 239
                P        P P        P   P  
Sbjct: 458 ETVAIPVRVA----PEPAVASAAPAPAAAPAA 485

Length = 618

>gnl|CDD|223065 PHA03378, PHA03378, EBNA-3B; Provisional

 Score = 40.8 bits (95), Expect = 8e-04
 Identities = 32/105 (30%), Positives = 36/105 (34%), Gaps = 6/105 (5%)

Query: 149 GKTHAKAGEPVTAYPAPMAAGSSSVPYAYPPPPQAGYGYPPPPPQGAAPNGAYPPQQPGY 208
           G+    A  P  A P   A G +  P A P   +     P      AA  GA  PQ P  
Sbjct: 722 GRARPPAAAPGRARPPAAAPGRARPPAAAPGRARPPAAAPGRARPPAAAPGAPTPQPPPQ 781

Query: 209 GYPPPPPQQGYGYPPPPPQQGYGYPPPPPQQGYGYPPQQPGYGYP 253
             PP P Q+  G P P P      P   P      P   PG   P
Sbjct: 782 A-PPAPQQRPRGAPTPQPP-----PQAGPTSMQLMPRAAPGQQGP 820

Length = 991

>gnl|CDD|218191 pfam04652, DUF605, Vta1 like

 Score = 40.1 bits (94), Expect = 8e-04
 Identities = 24/92 (26%), Positives = 31/92 (33%), Gaps = 4/92 (4%)

Query: 157 EPVTAYPAPMAAGSSSVPYAYPPPPQAGYGYPPPPPQGAAPNGAYPPQQPGYGYPPPPPQ 216
             V ++P+P    SS    + PP P +     PPP   +  N + PP       PPPPP 
Sbjct: 192 PGVPSFPSPPEDPSSPSDSSLPPAPSSFQSDTPPPSPESPTNPSPPPGPA---APPPPPV 248

Query: 217 QGYGYPP-PPPQQGYGYPPPPPQQGYGYPPQQ 247
           Q         P        P P  G       
Sbjct: 249 QQVPPLSTAKPTPPSASATPAPIGGITLDDDA 280

Vta1 (VPS20-associated protein 1) is a positive regulator of Vps4. Vps4 is an ATPase that is required in the multivesicular body (MVB) sorting pathway to dissociate the endosomal sorting complex required for transport (ESCRT). Vta1 promotes correct assembly of Vps4 and stimulates its ATPase activity through its conserved Vta1/SBP1/LIP5 region. Length = 315

>gnl|CDD|236090 PRK07764, PRK07764, DNA polymerase III subunits gamma and tau; Validated

 Score = 40.0 bits (94), Expect = 0.001
 Identities = 19/110 (17%), Positives = 21/110 (19%), Gaps = 4/110 (3%)

Query: 159 VTAYPAPMAAGSSSVPYAYPPPPQAGYGYPPPPPQGAAPNGAYPPQQPGYGYPPPPPQQG 218
               PAP AAG    P      P      P  P   AAP    P                
Sbjct: 586 AVVGPAPGAAGGEGPPAPASSGPPEEAARPAAPAAPAAPAAPAPAGAAAAPAEASAAPAP 645

Query: 219 YGYPPPPPQQGYGYPPPP----PQQGYGYPPQQPGYGYPPVKPAKKSNGG 264
               P    +    P                        P   A  +  G
Sbjct: 646 GVAAPEHHPKHVAVPDASDGGDGWPAKAGGAAPAAPPPAPAPAAPAAPAG 695

Length = 824

>gnl|CDD|237871 PRK14965, PRK14965, DNA polymerase III subunits gamma and tau; Provisional

 Score = 40.1 bits (94), Expect = 0.001
 Identities = 17/75 (22%), Positives = 20/75 (26%), Gaps = 4/75 (5%)

Query: 159 VTAYPAPMAAGSSSVPYAYPPPPQAGYGYPPPPPQGAAPNGAYPPQQPGYGYPPPPPQQG 218
             A P+      +    A PPP  A    PP PP   A   A  P           P   
Sbjct: 381 APAPPSAAWGAPTPAAPAAPPPAAA----PPVPPAAPARPAAARPAPAPAPPAAAAPPAR 436

Query: 219 YGYPPPPPQQGYGYP 233
              P      G  + 
Sbjct: 437 SADPAAAASAGDRWR 451

Length = 576

>gnl|CDD|237865 PRK14951, PRK14951, DNA polymerase III subunits gamma and tau; Provisional

 Score = 40.1 bits (94), Expect = 0.001
 Identities = 26/123 (21%), Positives = 30/123 (24%), Gaps = 1/123 (0%)

Query: 137 LHFSYKFSEPTVGKTHAKA-GEPVTAYPAPMAAGSSSVPYAYPPPPQAGYGYPPPPPQGA 195
           L F    +         K    P  A PA      ++   A    P A    P  PP  A
Sbjct: 362 LAFKPAAAAEAAAPAEKKTPARPEAAAPAAAPVAQAAAAPAPAAAPAAAASAPAAPPAAA 421

Query: 196 APNGAYPPQQPGYGYPPPPPQQGYGYPPPPPQQGYGYPPPPPQQGYGYPPQQPGYGYPPV 255
            P     P        P          P PP Q        P +    P        P  
Sbjct: 422 PPAPVAAPAAAAPAAAPAAAPAAVALAPAPPAQAAPETVAIPVRVAPEPAVASAAPAPAA 481

Query: 256 KPA 258
            PA
Sbjct: 482 APA 484

Length = 618

>gnl|CDD|237865 PRK14951, PRK14951, DNA polymerase III subunits gamma and tau; Provisional

 Score = 40.1 bits (94), Expect = 0.001
 Identities = 24/85 (28%), Positives = 30/85 (35%), Gaps = 3/85 (3%)

Query: 144 SEPTVGKTHAKAGEPVTAYPAPMAAGSSSVPYAYPPPPQAGYGYPPPPPQGAAPNGAYPP 203
           +        A A  P  A PAP+AA +++ P A P    A     P PP  AAP     P
Sbjct: 404 AAAPAAAASAPAAPPAAAPPAPVAAPAAAAPAAAPAAAPAAVALAPAPPAQAAPETVAIP 463

Query: 204 QQPGYGYPPPPPQQGYGYPPPPPQQ 228
            +     P P        P   P  
Sbjct: 464 VRVA---PEPAVASAAPAPAAAPAA 485

Length = 618

>gnl|CDD|236090 PRK07764, PRK07764, DNA polymerase III subunits gamma and tau; Validated

 Score = 39.6 bits (93), Expect = 0.002
 Identities = 27/103 (26%), Positives = 30/103 (29%), Gaps = 3/103 (2%)

Query: 155 AGEPVTAYPAPMAAGSSSVP---YAYPPPPQAGYGYPPPPPQGAAPNGAYPPQQPGYGYP 211
              P  A      A +SS P    A P  P A      P P GAA   A     P  G  
Sbjct: 589 GPAPGAAGGEGPPAPASSGPPEEAARPAAPAAPAAPAAPAPAGAAAAPAEASAAPAPGVA 648

Query: 212 PPPPQQGYGYPPPPPQQGYGYPPPPPQQGYGYPPQQPGYGYPP 254
            P     +   P     G G+P          PP  P    P 
Sbjct: 649 APEHHPKHVAVPDASDGGDGWPAKAGGAAPAAPPPAPAPAAPA 691

Length = 824

>gnl|CDD|130689 TIGR01628, PABP-1234, polyadenylate binding protein, human types 1, 2, 3, 4 family

 Score = 39.4 bits (92), Expect = 0.002
 Identities = 22/120 (18%), Positives = 27/120 (22%), Gaps = 15/120 (12%)

Query: 153 AKAGEPVTAYPAPMAAGSSSVPYAYPPPPQAGY-----GYPPPPPQGAAPNGAYPPQQPG 207
            +         +PM  G+   P  Y   PQ  +     G+P        P    P     
Sbjct: 378 LQPRMRQLPMGSPMG-GAMGQPPYYGQGPQQQFNGQPLGWPRMSMM---PTPMGPGGPLR 433

Query: 208 YGYPPPPPQQGYGY------PPPPPQQGYGYPPPPPQQGYGYPPQQPGYGYPPVKPAKKS 261
                P                 PP Q   YPP            QP          KK 
Sbjct: 434 PNGLAPMNAVRAPSRNAQNAAQKPPMQPVMYPPNYQSLPLSQDLPQPQSTASQGGQNKKL 493

These eukaryotic proteins recognize the poly-A of mRNA and consists of four tandem RNA recognition domains at the N-terminus (rrm: pfam00076) followed by a PABP-specific domain (pfam00658) at the C-terminus. The protein is involved in the transport of mRNA's from the nucleus to the cytoplasm. There are four paralogs in Homo sapiens which are expressed in testis (GP:11610605_PABP3 ), platelets (SP:Q13310_PABP4 ), broadly expressed (SP:P11940_PABP1) and of unknown tissue range (SP:Q15097_PABP2). Length = 562

>gnl|CDD|218191 pfam04652, DUF605, Vta1 like

 Score = 38.9 bits (91), Expect = 0.002
 Identities = 16/98 (16%), Positives = 20/98 (20%), Gaps = 6/98 (6%)

Query: 163 PAPMAAGSSSVPYAYPPPPQAGYGYPPPPPQGAAPNGAYPPQQ--PGYGYPPPPPQQGYG 220
                               +     PP      P+   PP+          PP    + 
Sbjct: 165 TTNSDNSFPGEDADPASASPS----DPPSSSPGVPSFPSPPEDPSSPSDSSLPPAPSSFQ 220

Query: 221 YPPPPPQQGYGYPPPPPQQGYGYPPQQPGYGYPPVKPA 258
              PPP       P PP      PP       P     
Sbjct: 221 SDTPPPSPESPTNPSPPPGPAAPPPPPVQQVPPLSTAK 258

Vta1 (VPS20-associated protein 1) is a positive regulator of Vps4. Vps4 is an ATPase that is required in the multivesicular body (MVB) sorting pathway to dissociate the endosomal sorting complex required for transport (ESCRT). Vta1 promotes correct assembly of Vps4 and stimulates its ATPase activity through its conserved Vta1/SBP1/LIP5 region. Length = 315

>gnl|CDD|236669 PRK10263, PRK10263, DNA translocase FtsK; Provisional

 Score = 39.7 bits (92), Expect = 0.002
 Identities = 33/102 (32%), Positives = 34/102 (33%), Gaps = 11/102 (10%)

Query: 171 SSVPYAYPPPPQAGYGYPPPPPQGAAPNGAYP-PQQPGYGYPPPPPQQGYGYPPPPPQQG 229
              P   P  P A       P Q  AP   Y  PQQP      P PQ      P  PQ  
Sbjct: 748 IVEPVQQPQQPVAPQQQYQQPQQPVAPQPQYQQPQQPV----APQPQYQQPQQPVAPQPQ 803

Query: 230 YGYPPPP--PQQGYGYPPQ----QPGYGYPPVKPAKKSNGGL 265
           Y  P  P  PQ  Y  P Q    QP Y  P    A +    L
Sbjct: 804 YQQPQQPVAPQPQYQQPQQPVAPQPQYQQPQQPVAPQPQDTL 845

Length = 1355

>gnl|CDD|236669 PRK10263, PRK10263, DNA translocase FtsK; Provisional

 Score = 39.7 bits (92), Expect = 0.002
 Identities = 33/115 (28%), Positives = 38/115 (33%), Gaps = 16/115 (13%)

Query: 154 KAGEPVTAYPAPMAAGSSSVPYAYPPPPQAGYGYP-----PPPPQGAAPNGAYPPQQPGY 208
           + GEPV A PAP          +    P   Y  P      P     AP    P QQP Y
Sbjct: 367 QTGEPVIA-PAP----EGYPQQSQYAQPAVQYNEPLQQPVQPQQPYYAPAAEQPAQQPYY 421

Query: 209 GYPPPPPQQGYGYPPPPPQQ-GYGYPPPPPQQGYGYPPQ---QPGYGYP-PVKPA 258
              P  P Q   Y  P P+Q   G      +Q   + PQ   Q    Y  P    
Sbjct: 422 APAPEQPAQ-QPYYAPAPEQPVAGNAWQAEEQQSTFAPQSTYQTEQTYQQPAAQE 475

Length = 1355

>gnl|CDD|222095 pfam13388, DUF4106, Protein of unknown function (DUF4106)

 Score = 39.3 bits (91), Expect = 0.002
 Identities = 23/80 (28%), Positives = 26/80 (32%), Gaps = 12/80 (15%)

Query: 177 YPPPPQAGYGYPPPPPQGAAPNGAYPPQQPGYGYPPPPPQQGYGYPPP--PPQQGYGYPP 234
           + P P        P  Q    N A  PQQ     P  P QQ     P   PPQ   G+  
Sbjct: 199 HAPKPTQQPTVQNPAQQPTVQNPAQQPQQQPQQQPVQPAQQPTPQNPAQQPPQTEQGHKR 258

Query: 235 PPPQ----------QGYGYP 244
              Q          + YGYP
Sbjct: 259 SREQGNQEFLKMLKEDYGYP 278

This family of proteins are found in large numbers in the Trichomonas vaginalis proteome. The function of this protein is unknown. Length = 422

>gnl|CDD|222579 pfam14179, YppG, YppG-like protein

 Score = 36.6 bits (85), Expect = 0.002
 Identities = 18/62 (29%), Positives = 20/62 (32%)

Query: 174 PYAYPPPPQAGYGYPPPPPQGAAPNGAYPPQQPGYGYPPPPPQQGYGYPPPPPQQGYGYP 233
              YPP  Q    Y   P     P   Y P Q   G+  PP  Q Y    P  QQ   + 
Sbjct: 7   TNQYPPQNQQQQPYQQQPYHQQMPPPPYSPPQQQQGHFMPPQPQPYPKQSPQQQQPPQFS 66

Query: 234 PP 235
             
Sbjct: 67  SF 68

The YppG-like protein family includes the B. subtilis YppG protein, which is functionally uncharacterized. This family of proteins is found in bacteria. Proteins in this family are typically between 115 and 181 amino acids in length. There are two completely conserved residues (F and G) that may be functionally important. Length = 110

>gnl|CDD|237864 PRK14950, PRK14950, DNA polymerase III subunits gamma and tau; Provisional

 Score = 39.0 bits (91), Expect = 0.002
 Identities = 25/117 (21%), Positives = 36/117 (30%), Gaps = 7/117 (5%)

Query: 124 YQVRSSSGKPKGELHFSYKFSEPTVGKTHAKAGEPVTAYPAPMAAGSSSVPYAYPPPPQA 183
           +Q+R++     G+L       E  +    A      TA  AP     +  P +  P   A
Sbjct: 339 FQLRTT---SYGQLPLELAVIEALLVPVPAPQPAKPTA-AAPSPVRPTPAP-STRPKAAA 393

Query: 184 GYGYPPPPPQGAAPNGAYPPQQPGYGYPPPPPQQGYGYPP--PPPQQGYGYPPPPPQ 238
               PP  P          P +P     P  P+          P  +   Y PP P 
Sbjct: 394 AANIPPKEPVRETATPPPVPPRPVAPPVPHTPESAPKLTRAAIPVDEKPKYTPPAPP 450

Length = 585

>gnl|CDD|237057 PRK12323, PRK12323, DNA polymerase III subunits gamma and tau; Provisional

 Score = 39.5 bits (92), Expect = 0.002
 Identities = 24/99 (24%), Positives = 27/99 (27%)

Query: 155 AGEPVTAYPAPMAAGSSSVPYAYPPPPQAGYGYPPPPPQGAAPNGAYPPQQPGYGYPPPP 214
           A E + A     A G    P   P P  A      P   G  P  A     P    P   
Sbjct: 429 APEALAAARQASARGPGGAPAPAPAPAAAPAAAARPAAAGPRPVAAAAAAAPARAAPAAA 488

Query: 215 PQQGYGYPPPPPQQGYGYPPPPPQQGYGYPPQQPGYGYP 253
           P      PPP  +    +  P P Q    P        P
Sbjct: 489 PAPADDDPPPWEELPPEFASPAPAQPDAAPAGWVAESIP 527

Length = 700

>gnl|CDD|236090 PRK07764, PRK07764, DNA polymerase III subunits gamma and tau; Validated

 Score = 38.8 bits (91), Expect = 0.003
 Identities = 20/121 (16%), Positives = 21/121 (17%), Gaps = 10/121 (8%)

Query: 146 PTVGKTHAKAGEPVTAYPAPMAAGSSSVPYAYPPPPQAGYGYPPPPPQGAAPNGAYPPQQ 205
                 H      V                    P        P  P   A      P  
Sbjct: 646 GVAAPEHHPKHVAVPDASDG--GDGWPAKAGGAAPAAPPPAPAPAAPAAPAGAAPAQPAP 703

Query: 206 PGYGYPPPPPQQGYGYPPPPPQQGYGYP--------PPPPQQGYGYPPQQPGYGYPPVKP 257
                PP          PP   QG   P        P PP+      P       PP   
Sbjct: 704 APAATPPAGQADDPAAQPPQAAQGASAPSPAADDPVPLPPEPDDPPDPAGAPAQPPPPPA 763

Query: 258 A 258
            
Sbjct: 764 P 764

Length = 824

>gnl|CDD|221501 pfam12273, RCR, Chitin synthesis regulation, resistance to Congo red

 Score = 36.7 bits (85), Expect = 0.003
 Identities = 15/86 (17%), Positives = 19/86 (22%), Gaps = 12/86 (13%)

Query: 181 PQAGYGYPPPPPQGAAPNGAYPPQQPGYGYPPPPPQQGYG------------YPPPPPQQ 228
           P  G  +  PP    +        Q       PP  +               + P P   
Sbjct: 33  PIYGTAWLAPPSYRQSQQQYNNTPQGRPPQYVPPYTETANENDLGYYDGQGEFHPNPKAP 92

Query: 229 GYGYPPPPPQQGYGYPPQQPGYGYPP 254
                PPP     G         Y P
Sbjct: 93  AIELQPPPNAYERGTRSPTTDDEYQP 118

RCR proteins are ER membrane proteins that regulate chitin deposition in fungal cell walls. Although chitin, a linear polymer of beta-1,4-linked N-acetylglucosamine, constitutes only 2% of the cell wall it plays a vital role in the overall protection of the cell wall against stress, noxious chemicals and osmotic pressure changes. Congo red is a cell wall-disrupting benzidine-type dye extensively used in many cell wall mutant studies that specifically targets chitin in yeast cells and inhibits growth. RCR proteins render the yeasts resistant to Congo red by diminishing the content of chitin in the cell wall. RCR proteins are probably regulating chitin synthase III interact directly with ubiquitin ligase Rsp5, and the VPEY motif is necessary for this, via interaction with the WW domains of Rsp5. Length = 124

>gnl|CDD|227505 COG5178, PRP8, U5 snRNP spliceosome subunit [RNA processing and modification]

 Score = 39.2 bits (91), Expect = 0.003
 Identities = 20/45 (44%), Positives = 22/45 (48%), Gaps = 16/45 (35%)

Query: 171 SSVPYAYPPPPQAGYGYPPPPPQGAAPNGAYPPQQPGYGYPPPPP 215
           +S+P   PPPP       PPPP      G  PP QP    PPPPP
Sbjct: 2   ASLPPGNPPPP-------PPPP------GFEPPSQPP---PPPPP 30

Length = 2365

>gnl|CDD|220603 pfam10152, DUF2360, Predicted coiled-coil domain-containing protein (DUF2360)

 Score = 37.0 bits (86), Expect = 0.003
 Identities = 16/53 (30%), Positives = 17/53 (32%), Gaps = 5/53 (9%)

Query: 188 PPPPPQGAAPNGAYPPQQPGYGYPPPPPQQGYGYPPPPPQQGYGYPPPPPQQG 240
            PPPP  A  NG  PP  P       PP       PP         P  P + 
Sbjct: 58  TPPPPASAITNGGPPPPPPARAEAASPPPPEAPAEPPAEP-----EPEAPAEN 105

This is the conserved 140 amino acid region of a family of proteins conserved from nematodes to humans. One C. elegans member is annotated as a Daf-16-dependent longevity protein 1 but this could not be confirmed. The function is unknown. Length = 147

>gnl|CDD|223061 PHA03369, PHA03369, capsid maturational protease; Provisional

 Score = 38.8 bits (90), Expect = 0.003
 Identities = 23/104 (22%), Positives = 31/104 (29%), Gaps = 6/104 (5%)

Query: 159 VTAYPAPMAAGSSSVPYAYPPPPQAGYGYPPPPPQGAAPNGAYPPQQPGYGYPP---PPP 215
               P+ + A ++ V     P    G      P +      + P + P   YPP      
Sbjct: 352 SLTAPSRVLAAAAKVAVIAAPQTHTGPADRQRPQRPDGIPYSVPARSPMTAYPPVPQFCG 411

Query: 216 QQGYGYPPPPPQQGYGYPPPPPQQGYGYPPQQPGYGYPPVKPAK 259
             G   P  P   G  Y P P       PPQ       P+  A 
Sbjct: 412 DPGLVSPYNPQSPGTSYGPEPVG---PVPPQPTNPYVMPISMAN 452

Length = 663

>gnl|CDD|177614 PHA03377, PHA03377, EBNA-3C; Provisional

 Score = 38.9 bits (90), Expect = 0.003
 Identities = 36/118 (30%), Positives = 42/118 (35%), Gaps = 25/118 (21%)

Query: 158 PVTAYPAPMAAGSSSVPYAYPPPPQAGY-GYPPPPPQG---------AAPNG-------- 199
           P + +  P A  +    Y  P PPQA Y GY  P  QG         A P G        
Sbjct: 747 PYSGHEEPQAQQAPYPGYWEPRPPQAPYLGYQEPQAQGVQVSSYPGYAGPWGLRAQHPRY 806

Query: 200 ----AYPPQQPGYGYPPPPPQQGYGYPPPPPQQGYGYPPPPPQQGYGYPPQQPGYGYP 253
               AY  Q PG+G+P  P       PP  P Q  G       Q   +P  Q   G P
Sbjct: 807 RHSWAYWSQYPGHGHPQGPWAP---RPPHLPPQWDGSAGHGQDQVSQFPHLQSETGPP 861

Length = 1000

>gnl|CDD|236669 PRK10263, PRK10263, DNA translocase FtsK; Provisional

 Score = 38.5 bits (89), Expect = 0.004
 Identities = 30/91 (32%), Positives = 31/91 (34%), Gaps = 9/91 (9%)

Query: 157 EPVTAYPAPMAAGSSSVPYAYPPPPQAGYGYP----PPPPQGAAPNGAYPPQQPGYGYPP 212
           EPV     P+A          P  PQ  Y  P     P PQ   P     PQ P Y  P 
Sbjct: 750 EPVQQPQQPVAPQQQYQQPQQPVAPQPQYQQPQQPVAPQPQYQQPQQPVAPQ-PQYQQPQ 808

Query: 213 PP--PQQGYGYPPPP--PQQGYGYPPPPPQQ 239
            P  PQ  Y  P  P  PQ  Y  P  P   
Sbjct: 809 QPVAPQPQYQQPQQPVAPQPQYQQPQQPVAP 839

Length = 1355

>gnl|CDD|220260 pfam09483, HpaP, Type III secretion protein (HpaP)

 Score = 37.1 bits (86), Expect = 0.004
 Identities = 23/76 (30%), Positives = 26/76 (34%), Gaps = 6/76 (7%)

Query: 157 EPVTAYPAPMAAGSSSVPYAYPPPPQAGYGYP--PPPPQGAAPNGAYPPQQPGYG-YPPP 213
            P  A P    A   S  YA      A  G P  P PP  A       P++P     PP 
Sbjct: 1   APAGAAPR---AARRSFDYARLMRRAARAGPPGTPAPPGPAEDAHPEFPERPRDAPAPPA 57

Query: 214 PPQQGYGYPPPPPQQG 229
           PP+   G   P P   
Sbjct: 58  PPRATDGDRDPQPLAD 73

This entry represents proteins encoded by genes which are always found in type III secretion operons, although their function in the processes of secretion and virulence is unclear. Hpa stands for Hrp-associated gene, where Hrp stands for hypersensitivity response and virulence. see also PMID:18584024. Length = 185

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	305
cd04016	121	C2_Tollip C2 domain present in Toll-interacting pr	99.91
cd04051	125	C2_SRC2_like C2 domain present in Soybean genes Re	99.87
cd08681	118	C2_fungal_Inn1p-like C2 domain found in fungal Ing	99.87
cd04042	121	C2A_MCTP_PRT C2 domain first repeat found in Multi	99.86
cd04022	127	C2A_MCTP_PRT_plant C2 domain first repeat found in	99.86
cd04019	150	C2C_MCTP_PRT_plant C2 domain third repeat found in	99.85
cd08682	126	C2_Rab11-FIP_classI C2 domain found in Rab11-famil	99.85
cd04033	133	C2_NEDD4_NEDD4L C2 domain present in the Human neu	99.85
cd04046	126	C2_Calpain C2 domain present in Calpain proteins.	99.84
cd08379	126	C2D_MCTP_PRT_plant C2 domain fourth repeat found i	99.84
cd04015	158	C2_plant_PLD C2 domain present in plant phospholip	99.83
cd08678	126	C2_C21orf25-like C2 domain found in the Human chro	99.83
cd08377	119	C2C_MCTP_PRT C2 domain third repeat found in Multi	99.83
cd04036	119	C2_cPLA2 C2 domain present in cytosolic PhosphoLip	99.83
cd08378	121	C2B_MCTP_PRT_plant C2 domain second repeat found i	99.83
cd08375	136	C2_Intersectin C2 domain present in Intersectin. A	99.82
cd04044	124	C2A_Tricalbin-like C2 domain first repeat present	99.82
cd08400	126	C2_Ras_p21A1 C2 domain present in RAS p21 protein	99.82
cd04025	123	C2B_RasA1_RasA4 C2 domain second repeat present in	99.82
cd08401	121	C2A_RasA2_RasA3 C2 domain first repeat present in	99.82
cd08376	116	C2B_MCTP_PRT C2 domain second repeat found in Mult	99.81
KOG1030	168	consensus Predicted Ca2+-dependent phospholipid-bi	99.8
cd08381	122	C2B_PI3K_class_II C2 domain second repeat present	99.8
cd08395	120	C2C_Munc13 C2 domain third repeat in Munc13 (mamma	99.8
cd04024	128	C2A_Synaptotagmin-like C2 domain first repeat pres	99.8
cd08382	123	C2_Smurf-like C2 domain present in Smad ubiquitina	99.8
cd04054	121	C2A_Rasal1_RasA4 C2 domain first repeat present in	99.8
cd08391	121	C2A_C2C_Synaptotagmin_like C2 domain first and thi	99.79
cd08677	118	C2A_Synaptotagmin-13 C2 domain. Synaptotagmin is a	99.79
cd04010	148	C2B_RasA3 C2 domain second repeat present in RAS p	99.79
cd08373	127	C2A_Ferlin C2 domain first repeat in Ferlin. Ferli	99.79
cd08392	128	C2A_SLP-3 C2 domain first repeat present in Synapt	99.78
cd08393	125	C2A_SLP-1_2 C2 domain first repeat present in Syna	99.78
cd04014	132	C2_PKC_epsilon C2 domain in Protein Kinase C (PKC)	99.78
cd04028	146	C2B_RIM1alpha C2 domain second repeat contained in	99.78
cd08680	124	C2_Kibra C2 domain found in Human protein Kibra. K	99.77
cd04049	124	C2_putative_Elicitor-responsive_gene C2 domain pre	99.77
cd04029	125	C2A_SLP-4_5 C2 domain first repeat present in Syna	99.77
cd04039	108	C2_PSD C2 domain present in Phosphatidylserine dec	99.76
cd04040	115	C2D_Tricalbin-like C2 domain fourth repeat present	99.76
cd08685	119	C2_RGS-like C2 domain of the Regulator Of G-Protei	99.76
cd04027	127	C2B_Munc13 C2 domain second repeat in Munc13 (mamm	99.76
cd04017	135	C2D_Ferlin C2 domain fourth repeat in Ferlin. Ferl	99.76
cd08385	124	C2A_Synaptotagmin-1-5-6-9-10 C2A domain first repe	99.76
cd08394	127	C2A_Munc13 C2 domain first repeat in Munc13 (mamma	99.76
cd04041	111	C2A_fungal C2 domain first repeat; fungal group. C	99.76
cd08690	155	C2_Freud-1 C2 domain found in 5' repressor element	99.76
cd04021	125	C2_E3_ubiquitin_ligase C2 domain present in E3 ubi	99.76
cd04043	126	C2_Munc13_fungal C2 domain in Munc13 (mammalian un	99.75
cd08387	124	C2A_Synaptotagmin-8 C2A domain first repeat presen	99.75
cd00275	128	C2_PLC_like C2 domain present in Phosphoinositide-	99.75
cd04050	105	C2B_Synaptotagmin-like C2 domain second repeat pre	99.75
cd08388	128	C2A_Synaptotagmin-4-11 C2A domain first repeat pre	99.75
cd08691	137	C2_NEDL1-like C2 domain present in NEDL1 (NEDD4-li	99.75
cd04030	127	C2C_KIAA1228 C2 domain third repeat present in unc	99.75
cd04011	111	C2B_Ferlin C2 domain second repeat in Ferlin. Ferl	99.74
cd08521	123	C2A_SLP C2 domain first repeat present in Synaptot	99.74
cd04045	120	C2C_Tricalbin-like C2 domain third repeat present	99.74
cd08688	110	C2_KIAA0528-like C2 domain found in the Human KIAA	99.73
cd04031	125	C2A_RIM1alpha C2 domain first repeat contained in	99.73
cd04009	133	C2B_Munc13-like C2 domain second repeat in Munc13	99.73
cd08386	125	C2A_Synaptotagmin-7 C2A domain first repeat presen	99.72
cd08389	124	C2A_Synaptotagmin-14_16 C2A domain first repeat pr	99.72
cd08390	123	C2A_Synaptotagmin-15-17 C2A domain first repeat pr	99.71
cd04020	162	C2B_SLP_1-2-3-4 C2 domain second repeat present in	99.7
cd04038	145	C2_ArfGAP C2 domain present in Arf GTPase Activati	99.7
cd04018	151	C2C_Ferlin C2 domain third repeat in Ferlin. Ferli	99.7
PLN03008	868	Phospholipase D delta	99.69
cd08384	133	C2B_Rabphilin_Doc2 C2 domain second repeat present	99.69
cd04032	127	C2_Perforin C2 domain of Perforin. Perforin contai	99.69
cd08407	138	C2B_Synaptotagmin-13 C2 domain second repeat prese	99.68
cd08406	136	C2B_Synaptotagmin-12 C2 domain second repeat prese	99.68
cd08404	136	C2B_Synaptotagmin-4 C2 domain second repeat presen	99.68
cd04052	111	C2B_Tricalbin-like C2 domain second repeat present	99.68
cd08675	137	C2B_RasGAP C2 domain second repeat of Ras GTPase a	99.68
cd08408	138	C2B_Synaptotagmin-14_16 C2 domain second repeat pr	99.68
cd08383	117	C2A_RasGAP C2 domain (first repeat) of Ras GTPase	99.67
cd04026	131	C2_PKC_alpha_gamma C2 domain in Protein Kinase C (	99.67
cd04035	123	C2A_Rabphilin_Doc2 C2 domain first repeat present	99.67
cd08402	136	C2B_Synaptotagmin-1 C2 domain second repeat presen	99.66
cd08676	153	C2A_Munc13-like C2 domain first repeat in Munc13 (	99.66
cd04037	124	C2E_Ferlin C2 domain fifth repeat in Ferlin. Ferli	99.66
cd08405	136	C2B_Synaptotagmin-7 C2 domain second repeat presen	99.66
cd04048	120	C2A_Copine C2 domain first repeat in Copine. There	99.66
cd08403	134	C2B_Synaptotagmin-3-5-6-9-10 C2 domain second repe	99.65
cd04013	146	C2_SynGAP_like C2 domain present in Ras GTPase act	99.65
cd08410	135	C2B_Synaptotagmin-17 C2 domain second repeat prese	99.64
cd00276	134	C2B_Synaptotagmin C2 domain second repeat present	99.64
cd08692	135	C2B_Tac2-N C2 domain second repeat found in Tac2-N	99.64
cd08686	118	C2_ABR C2 domain in the Active BCR (Breakpoint clu	99.64
cd08409	137	C2B_Synaptotagmin-15 C2 domain second repeat prese	99.63
cd04047	110	C2B_Copine C2 domain second repeat in Copine. Ther	99.62
PLN03200	2102	cellulose synthase-interactive protein; Provisiona	99.62
KOG1028	421	consensus Ca2+-dependent phospholipid-binding prot	99.62
KOG0696	683	consensus Serine/threonine protein kinase [Signal	99.6
PF00168	85	C2: C2 domain; InterPro: IPR000008 The C2 domain i	99.52
KOG1011	1283	consensus Neurotransmitter release regulator, UNC-	99.44
PLN02223	537	phosphoinositide phospholipase C	99.44
PLN02270	808	phospholipase D alpha	99.41
PLN02952	599	phosphoinositide phospholipase C	99.39
KOG2059	800	consensus Ras GTPase-activating protein [Signal tr	99.37
smart00239	101	C2 Protein kinase C conserved region 2 (CalB). Ca2	99.37
cd08374	133	C2F_Ferlin C2 domain sixth repeat in Ferlin. Ferli	99.36
COG5038	1227	Ca2+-dependent lipid-binding protein, contains C2	99.34
KOG0169	746	consensus Phosphoinositide-specific phospholipase	99.32
cd00030	102	C2 C2 domain. The C2 domain was first identified i	99.32
PLN02230	598	phosphoinositide phospholipase C 4	99.31
PLN02228	567	Phosphoinositide phospholipase C	99.3
PLN02222	581	phosphoinositide phospholipase C 2	99.28
cd08689	109	C2_fungal_Pkc1p C2 domain found in protein kinase	99.28
KOG1028	421	consensus Ca2+-dependent phospholipid-binding prot	99.27
COG5038	1227	Ca2+-dependent lipid-binding protein, contains C2	99.17
KOG1264	1267	consensus Phospholipase C [Lipid transport and met	99.04
KOG1328	1103	consensus Synaptic vesicle protein BAIAP3, involve	98.98
KOG1031	1169	consensus Predicted Ca2+-dependent phospholipid-bi	98.98
KOG1328	1103	consensus Synaptic vesicle protein BAIAP3, involve	98.92
PLN02352	758	phospholipase D epsilon	98.91
KOG3837	523	consensus Uncharacterized conserved protein, conta	98.65
KOG0905	1639	consensus Phosphoinositide 3-kinase [Signal transd	98.6
KOG2059	800	consensus Ras GTPase-activating protein [Signal tr	98.53
cd08683	143	C2_C2cd3 C2 domain found in C2 calcium-dependent d	98.47
KOG1013	362	consensus Synaptic vesicle protein rabphilin-3A [I	98.44
KOG1011	1283	consensus Neurotransmitter release regulator, UNC-	98.35
KOG1327	529	consensus Copine [Signal transduction mechanisms]	98.23
KOG1013	362	consensus Synaptic vesicle protein rabphilin-3A [I	98.14
KOG1265	1189	consensus Phospholipase C [Lipid transport and met	97.96
KOG1326	1105	consensus Membrane-associated protein FER-1 and re	97.88
cd08684	103	C2A_Tac2-N C2 domain first repeat found in Tac2-N	97.86
PLN02964	644	phosphatidylserine decarboxylase	97.83
PF15627	156	CEP76-C2: CEP76 C2 domain	97.75
PF10358	143	NT-C2: N-terminal C2 in EEIG1 and EHBP1 proteins;	97.66
cd08398	158	C2_PI3K_class_I_alpha C2 domain present in class I	97.4
cd08687	98	C2_PKN-like C2 domain in Protein kinase C-like (PK	97.34
KOG2060	405	consensus Rab3 effector RIM1 and related proteins,	97.21
PF12416	340	DUF3668: Cep120 protein; InterPro: IPR022136 This	97.17
KOG1924	1102	consensus RhoA GTPase effector DIA/Diaphanous [Sig	97.06
cd08693	173	C2_PI3K_class_I_beta_delta C2 domain present in cl	97.05
cd08380	156	C2_PI3K_like C2 domain present in phosphatidylinos	96.98
PF11618	107	DUF3250: Protein of unknown function (DUF3250); In	96.93
cd08399	178	C2_PI3K_class_I_gamma C2 domain present in class I	96.62
KOG1326	1105	consensus Membrane-associated protein FER-1 and re	96.56
PF14429	184	DOCK-C2: C2 domain in Dock180 and Zizimin proteins	96.49
cd04012	171	C2A_PI3K_class_II C2 domain first repeat present i	96.44
KOG1924	1102	consensus RhoA GTPase effector DIA/Diaphanous [Sig	96.43
cd08694	196	C2_Dock-A C2 domains found in Dedicator Of CytoKin	96.42
cd08695	189	C2_Dock-B C2 domains found in Dedicator Of CytoKin	96.4
cd08397	159	C2_PI3K_class_III C2 domain present in class III p	96.25
KOG1452	442	consensus Predicted Rho GTPase-activating protein	96.2
PF00792	142	PI3K_C2: Phosphoinositide 3-kinase C2; InterPro: I	95.57
smart00142	100	PI3K_C2 Phosphoinositide 3-kinase, region postulat	94.69
PF15625	168	CC2D2AN-C2: CC2D2A N-terminal C2 domain	94.19
cd08679	178	C2_DOCK180_related C2 domains found in Dedicator O	94.1
KOG1327	529	consensus Copine [Signal transduction mechanisms]	93.6
PF09849	247	DUF2076: Uncharacterized protein conserved in bact	90.87
cd08697	185	C2_Dock-D C2 domains found in Dedicator Of CytoKin	90.87
cd08696	179	C2_Dock-C C2 domains found in Dedicator Of CytoKin	90.84
PF14909	140	SPATA6: Spermatogenesis-assoc protein 6	90.64
KOG3543	1218	consensus Ca2+-dependent activator protein [Signal	89.89
PF06219	460	DUF1005: Protein of unknown function (DUF1005); In	89.66
PF14186	147	Aida_C2: Cytoskeletal adhesion; PDB: 2QZQ_A 2QZ5_A	88.06
PTZ00447	508	apical membrane antigen 1-like protein; Provisiona	87.8
KOG1329	887	consensus Phospholipase D1 [Lipid transport and me	87.65
PF14924	112	DUF4497: Protein of unknown function (DUF4497)	86.31
smart00157	217	PRP Major prion protein. The prion protein is a ma	80.93

>cd04016 C2_Tollip C2 domain present in Toll-interacting protein (Tollip)

Probab=99.91  E-value=2.5e-23  Score=167.45  Aligned_cols=117  Identities=18%  Similarity=0.377  Sum_probs=98.6

Q ss_pred             ceEEEEEEEecCCCCCCCCCCCCcEEEEEEecCCCCCCceEEeEecCCCCCCCeeeceEEEEeccchhccCceEEEEEEE
Q 021949            5 RALDLNLISAKHLKDVHLISKMDVYAVVSISGDHTIKKQKVKSHVDRSGGSNPTWNFPIKFTFNQSLAQQNRLTLDFKIK   84 (305)
Q Consensus         5 ~~L~V~vvsA~dL~~~~~~gk~dpYv~v~l~~~~~~~~~~~kT~v~k~~~~nP~Wne~f~f~v~~~~~~~~~~~L~v~V~   84 (305)
                      ++|+|+|++|++|++.+ ++++||||++++++      .++||+++++++.||+|||+|.|.+....     ..|.|+||
T Consensus         2 g~L~v~v~~Ak~l~~~~-~g~sDPYv~i~lg~------~~~kT~v~~~~~~nP~WNe~F~f~v~~~~-----~~l~~~V~   69 (121)
T cd04016           2 GRLSITVVQAKLVKNYG-LTRMDPYCRIRVGH------AVYETPTAYNGAKNPRWNKTIQCTLPEGV-----DSIYIEIF   69 (121)
T ss_pred             cEEEEEEEEccCCCcCC-CCCCCceEEEEECC------EEEEeEEccCCCCCCccCeEEEEEecCCC-----cEEEEEEE
Confidence            68999999999999887 89999999999976      67899999887899999999999996542     47999999


Q ss_pred             ecCCC-CCcceeEEEEeCcc-cccccCCCCCCCCCcceEEEEEeecCCC-CCccEEEEEEEE
Q 021949           85 SDGLL-GDKTVGEVIVPIKE-LLDSSSSSSSGDAKSMKFVTYQVRSSSG-KPKGELHFSYKF  143 (305)
Q Consensus        85 d~~~~-~d~~IG~~~vpL~~-l~~~~~~~~~~~g~~~~~~~~~l~~~~g-~~~G~l~lsl~~  143 (305)
                      |++.+ +|++||++.|+|.+ +....          ....||.|...++ +..|.|+|+|+|
T Consensus        70 d~d~~~~dd~iG~~~i~l~~~~~~g~----------~~~~W~~L~~~~~~~~~g~i~l~l~y  121 (121)
T cd04016          70 DERAFTMDERIAWTHITIPESVFNGE----------TLDDWYSLSGKQGEDKEGMINLVFSY  121 (121)
T ss_pred             eCCCCcCCceEEEEEEECchhccCCC----------CccccEeCcCccCCCCceEEEEEEeC
Confidence            99998 78999999999974 44321          2477888876544 468999999986

Tollip is a part of the Interleukin-1 receptor (IL-1R) signaling pathway. Tollip is proposed to link serine/threonine kinase IRAK to IL-1Rs as well as inhibiting phosphorylation of IRAK. There is a single C2 domain present in Tollip. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice varian

>cd04051 C2_SRC2_like C2 domain present in Soybean genes Regulated by Cold 2 (SRC2)-like proteins

Probab=99.87  E-value=1.3e-21  Score=158.09  Aligned_cols=124  Identities=47%  Similarity=0.815  Sum_probs=103.8

Q ss_pred             eEEEEEEEecCCCCCCCCCCCCcEEEEEEecCCCCCCceEEeEecCCCCCCCeeeceEEEEeccchhccCceEEEEEEEe
Q 021949            6 ALDLNLISAKHLKDVHLISKMDVYAVVSISGDHTIKKQKVKSHVDRSGGSNPTWNFPIKFTFNQSLAQQNRLTLDFKIKS   85 (305)
Q Consensus         6 ~L~V~vvsA~dL~~~~~~gk~dpYv~v~l~~~~~~~~~~~kT~v~k~~~~nP~Wne~f~f~v~~~~~~~~~~~L~v~V~d   85 (305)
                      +|+|+|++|++|++.+.++++||||+|++.+     ..+++|+++++++.||.|||+|.|.+....+......|.|+|||
T Consensus         1 ~L~V~V~sA~~L~~~~~~~~~dpYv~v~~~~-----~~~~~T~~~~~~~~~P~Wne~f~f~v~~~~~~~~~~~l~~~v~d   75 (125)
T cd04051           1 TLEITIISAEDLKNVNLFGKMKVYAVVWIDP-----SHKQSTPVDRDGGTNPTWNETLRFPLDERLLQQGRLALTIEVYC   75 (125)
T ss_pred             CEEEEEEEcccCCCCCcccCCceEEEEEECC-----CcccccccccCCCCCCCCCCEEEEEcChHhcccCccEEEEEEEE
Confidence            5899999999999998889999999999976     25789999876689999999999999776422233689999999


Q ss_pred             cCCC-CCcceeEEEEeCcccccccCCCCCCCCCcceEEEEEeecCCCCCccEEEE
Q 021949           86 DGLL-GDKTVGEVIVPIKELLDSSSSSSSGDAKSMKFVTYQVRSSSGKPKGELHF  139 (305)
Q Consensus        86 ~~~~-~d~~IG~~~vpL~~l~~~~~~~~~~~g~~~~~~~~~l~~~~g~~~G~l~l  139 (305)
                      ++.+ .|++||++.|+|.+++...    ..+ .+....||+|++++++.+|+|+|
T Consensus        76 ~~~~~~~~~lG~~~i~l~~l~~~~----~~~-~~~~~~~~~l~~~~g~~~G~~~~  125 (125)
T cd04051          76 ERPSLGDKLIGEVRVPLKDLLDGA----SPA-GELRFLSYQLRRPSGKPQGVLNF  125 (125)
T ss_pred             CCCCCCCCcEEEEEEEHHHhhccc----CCC-CcceeEEEEeECCCCCcCeEEeC
Confidence            9886 7899999999999999654    211 13457899999999999999986

SRC2 production is a response to pathogen infiltration. The initial response of increased Ca2+ concentrations are coupled to downstream signal transduction pathways via calcium binding proteins. SRC2 contains a single C2 domain which localizes to the plasma membrane and is involved in Ca2+ dependent protein binding. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such

>cd08681 C2_fungal_Inn1p-like C2 domain found in fungal Ingression 1 (Inn1) proteins

Probab=99.87  E-value=1.2e-21  Score=156.51  Aligned_cols=118  Identities=22%  Similarity=0.387  Sum_probs=99.6

Q ss_pred             ceEEEEEEEecCCCCCCCCCCCCcEEEEEEecCCCCCCceEEeEecCCCCCCCeeeceEEEEeccchhccCceEEEEEEE
Q 021949            5 RALDLNLISAKHLKDVHLISKMDVYAVVSISGDHTIKKQKVKSHVDRSGGSNPTWNFPIKFTFNQSLAQQNRLTLDFKIK   84 (305)
Q Consensus         5 ~~L~V~vvsA~dL~~~~~~gk~dpYv~v~l~~~~~~~~~~~kT~v~k~~~~nP~Wne~f~f~v~~~~~~~~~~~L~v~V~   84 (305)
                      ++|+|+|++|++|++.+.++++||||+|++.+      .+.+|+++++++.||+|||+|.|.+....    ...|.|+||
T Consensus         1 g~L~V~v~~A~~L~~~~~~~~~dpyv~v~~~~------~~~kT~~~~~~~~nP~Wne~f~f~v~~~~----~~~l~i~v~   70 (118)
T cd08681           1 GTLVVVVLKARNLPNKRKLDKQDPYCVLRIGG------VTKKTKTDFRGGQHPEWDEELRFEITEDK----KPILKVAVF   70 (118)
T ss_pred             CEEEEEEEEccCCCCCCcCCCCCceEEEEECC------CccccccccCCCCCCccCceEEEEecCCC----CCEEEEEEE
Confidence            57999999999999999889999999999976      57788887665799999999999997642    258999999


Q ss_pred             ecCCCCCcceeEEEEeCcccccccCCCCCCCCCcceEEEEEeecCCCCCccEEEEEEEE
Q 021949           85 SDGLLGDKTVGEVIVPIKELLDSSSSSSSGDAKSMKFVTYQVRSSSGKPKGELHFSYKF  143 (305)
Q Consensus        85 d~~~~~d~~IG~~~vpL~~l~~~~~~~~~~~g~~~~~~~~~l~~~~g~~~G~l~lsl~~  143 (305)
                      |++..+|++||++.++|.++....          ....||.|.. +++..|+|+|+++|
T Consensus        71 d~~~~~~~~iG~~~~~l~~~~~~~----------~~~~w~~L~~-~~~~~G~i~l~l~f  118 (118)
T cd08681          71 DDDKRKPDLIGDTEVDLSPALKEG----------EFDDWYELTL-KGRYAGEVYLELTF  118 (118)
T ss_pred             eCCCCCCcceEEEEEecHHHhhcC----------CCCCcEEecc-CCcEeeEEEEEEEC
Confidence            998777899999999999987533          1356788875 45789999999986

Saccharomyces cerevisiae Inn1 associates with the contractile actomyosin ring at the end of mitosis and is needed for cytokinesis. The C2 domain of Inn1, located at the N-terminus, is required for ingression of the plasma membrane. The C-terminus is relatively unstructured and contains eight PXXP motifs that are thought to mediate interaction of Inn1 with other proteins with SH3 domains in the cytokinesis proteins Hof1 (an F-BAR protein) and Cyk3 (whose overexpression can restore primary septum formation in Inn1Delta cells) as well as recruiting Inn1 to the bud-neck by binding to Cyk3. Inn1 and Cyk3 appear to cooperate in activating chitin synthase Chs2 for primary septum formation, which allows coordination of actomyosin ring contraction with ingression of the cleavage furrow. It is thought that the C2 domain of Inn1 helps to preserve the link between the actomyosin ring and the plasma membrane, contr

>cd04042 C2A_MCTP_PRT C2 domain first repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP)

Probab=99.86  E-value=1e-20  Score=152.12  Aligned_cols=119  Identities=18%  Similarity=0.214  Sum_probs=101.9

Q ss_pred             eEEEEEEEecCCCCCCCCCCCCcEEEEEEecCCCCCCceEEeEecCCCCCCCeeeceEEEEeccchhccCceEEEEEEEe
Q 021949            6 ALDLNLISAKHLKDVHLISKMDVYAVVSISGDHTIKKQKVKSHVDRSGGSNPTWNFPIKFTFNQSLAQQNRLTLDFKIKS   85 (305)
Q Consensus         6 ~L~V~vvsA~dL~~~~~~gk~dpYv~v~l~~~~~~~~~~~kT~v~k~~~~nP~Wne~f~f~v~~~~~~~~~~~L~v~V~d   85 (305)
                      .|+|+|++|++|...+.++++||||++++.+     ..+.+|+++++ +.||+|||+|.|.+....     ..|.|+|||
T Consensus         1 ~L~v~v~~a~~L~~~d~~g~~Dpyv~v~~~~-----~~~~kT~~~~~-t~nP~Wne~f~f~v~~~~-----~~l~~~v~D   69 (121)
T cd04042           1 QLDIHLKEGRNLAARDRGGTSDPYVKFKYGG-----KTVYKSKTIYK-NLNPVWDEKFTLPIEDVT-----QPLYIKVFD   69 (121)
T ss_pred             CeEEEEEEeeCCCCcCCCCCCCCeEEEEECC-----EEEEEeeeccC-CCCCccceeEEEEecCCC-----CeEEEEEEe
Confidence            3899999999999988889999999999975     36789999887 899999999999986432     489999999


Q ss_pred             cCCC-CCcceeEEEEeCcccccccCCCCCCCCCcceEEEEEeecCC-CCCccEEEEEEEEec
Q 021949           86 DGLL-GDKTVGEVIVPIKELLDSSSSSSSGDAKSMKFVTYQVRSSS-GKPKGELHFSYKFSE  145 (305)
Q Consensus        86 ~~~~-~d~~IG~~~vpL~~l~~~~~~~~~~~g~~~~~~~~~l~~~~-g~~~G~l~lsl~~~~  145 (305)
                      ++.+ +|++||++.++|.++....          ....|+.|...+ .+..|+|+|.++|.+
T Consensus        70 ~d~~~~~~~iG~~~~~l~~l~~~~----------~~~~~~~L~~~~~~~~~G~l~l~~~~~~  121 (121)
T cd04042          70 YDRGLTDDFMGSAFVDLSTLELNK----------PTEVKLKLEDPNSDEDLGYISLVVTLTP  121 (121)
T ss_pred             CCCCCCCcceEEEEEEHHHcCCCC----------CeEEEEECCCCCCccCceEEEEEEEECC
Confidence            9988 8999999999999998533          246789998654 378999999999864

MCTPs are involved in Ca2+ signaling at the membrane. MCTP is composed of a variable N-terminal sequence, three C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular protein

>cd04022 C2A_MCTP_PRT_plant C2 domain first repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset

Probab=99.86  E-value=9.2e-21  Score=153.70  Aligned_cols=123  Identities=17%  Similarity=0.292  Sum_probs=100.9

Q ss_pred             eEEEEEEEecCCCCCCCCCCCCcEEEEEEecCCCCCCceEEeEecCCCCCCCeeeceEEEEeccchhccCceEEEEEEEe
Q 021949            6 ALDLNLISAKHLKDVHLISKMDVYAVVSISGDHTIKKQKVKSHVDRSGGSNPTWNFPIKFTFNQSLAQQNRLTLDFKIKS   85 (305)
Q Consensus         6 ~L~V~vvsA~dL~~~~~~gk~dpYv~v~l~~~~~~~~~~~kT~v~k~~~~nP~Wne~f~f~v~~~~~~~~~~~L~v~V~d   85 (305)
                      +|+|+|++|++|...+..+.+||||+|++.+      .++||+++++ +.||+|||+|.|.+..... ..+..|.|+|||
T Consensus         1 ~L~V~vi~A~~L~~~d~~g~~dpyv~v~~~~------~~~rT~v~~~-t~nP~Wne~f~f~~~~~~~-~~~~~l~~~V~d   72 (127)
T cd04022           1 KLVVEVVDAQDLMPKDGQGSSSAYVELDFDG------QKKRTRTKPK-DLNPVWNEKLVFNVSDPSR-LSNLVLEVYVYN   72 (127)
T ss_pred             CeEEEEEEeeCCCCCCCCCCcCcEEEEEECC------EEecceeEcC-CCCCccceEEEEEccCHHH-ccCCeEEEEEee
Confidence            5899999999999888888999999999976      5789999887 7999999999999975432 123589999999


Q ss_pred             cCCC--CCcceeEEEEeCcccccccCCCCCCCCCcceEEEEEeecC--CCCCccEEEEEEEEec
Q 021949           86 DGLL--GDKTVGEVIVPIKELLDSSSSSSSGDAKSMKFVTYQVRSS--SGKPKGELHFSYKFSE  145 (305)
Q Consensus        86 ~~~~--~d~~IG~~~vpL~~l~~~~~~~~~~~g~~~~~~~~~l~~~--~g~~~G~l~lsl~~~~  145 (305)
                      ++.+  +|+|||++.|+|.++....         +....||.|.++  .++.+|+|.|++.|++
T Consensus        73 ~~~~~~~d~~lG~v~i~l~~l~~~~---------~~~~~w~~L~~~~~~~~~~G~l~l~~~~~~  127 (127)
T cd04022          73 DRRSGRRRSFLGRVRISGTSFVPPS---------EAVVQRYPLEKRGLFSRVRGEIGLKVYITD  127 (127)
T ss_pred             CCCCcCCCCeeeEEEEcHHHcCCCC---------CccceEeEeeeCCCCCCccEEEEEEEEEcC
Confidence            8876  6899999999999998322         124678888764  4568999999999864

MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates

>cd04019 C2C_MCTP_PRT_plant C2 domain third repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset

Probab=99.85  E-value=1.8e-20  Score=156.48  Aligned_cols=127  Identities=15%  Similarity=0.286  Sum_probs=103.9

Q ss_pred             eEEEEEEEecCCCCCCCCCCCCcEEEEEEecCCCCCCceEEeEecCCCCCCCeeeceEEEEeccchhccCceEEEEEEEe
Q 021949            6 ALDLNLISAKHLKDVHLISKMDVYAVVSISGDHTIKKQKVKSHVDRSGGSNPTWNFPIKFTFNQSLAQQNRLTLDFKIKS   85 (305)
Q Consensus         6 ~L~V~vvsA~dL~~~~~~gk~dpYv~v~l~~~~~~~~~~~kT~v~k~~~~nP~Wne~f~f~v~~~~~~~~~~~L~v~V~d   85 (305)
                      .|+|+|++|++|...+.++++||||+|++.+      ++.+|+++++++.||+|||+|+|.+.+...    ..|.|+|||
T Consensus         1 ~L~V~Vi~A~~L~~~d~~g~sDPYV~v~l~~------~~~kTk~~~~~t~nP~WNE~F~f~v~~~~~----~~l~v~V~d   70 (150)
T cd04019           1 YLRVTVIEAQDLVPSDKNRVPEVFVKAQLGN------QVLRTRPSQTRNGNPSWNEELMFVAAEPFE----DHLILSVED   70 (150)
T ss_pred             CEEEEEEEeECCCCCCCCCCCCeEEEEEECC------EEeeeEeccCCCCCCcccCcEEEEecCccC----CeEEEEEEE
Confidence            3899999999999999899999999999976      688999987657999999999999865321    489999999


Q ss_pred             cCCC-CCcceeEEEEeCcccccccCCCCCCCCCcceEEEEEeecCCC--------CCccEEEEEEEEeccCC
Q 021949           86 DGLL-GDKTVGEVIVPIKELLDSSSSSSSGDAKSMKFVTYQVRSSSG--------KPKGELHFSYKFSEPTV  148 (305)
Q Consensus        86 ~~~~-~d~~IG~~~vpL~~l~~~~~~~~~~~g~~~~~~~~~l~~~~g--------~~~G~l~lsl~~~~~~~  148 (305)
                      ++.+ +|++||++.|+|.++....      +.......||.|.+.++        +.+|+|+|+|.|.+...
T Consensus        71 ~~~~~~dd~lG~v~i~L~~l~~~~------~~~~~~~~W~~L~~~~~~~~~~k~~k~~g~l~l~i~~~~~~~  136 (150)
T cd04019          71 RVGPNKDEPLGRAVIPLNDIERRV------DDRPVPSRWFSLERPGGAMEQKKKRKFASRIHLRLCLDGGYH  136 (150)
T ss_pred             ecCCCCCCeEEEEEEEHHHCcccC------CCCccCCceEECcCCCCcccccccCcccccEEEEEEecCcce
Confidence            9877 7899999999999987432      11123477899987543        56899999999997543

MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates

>cd08682 C2_Rab11-FIP_classI C2 domain found in Rab11-family interacting proteins (FIP) class I

Probab=99.85  E-value=1.2e-20  Score=152.83  Aligned_cols=121  Identities=21%  Similarity=0.405  Sum_probs=97.1

Q ss_pred             EEEEEEEecCCCCCCCCCCCCcEEEEEEecCCCCCCceEEeEecCCCCCCCeeeceEEEEeccchh-ccCceEEEEEEEe
Q 021949            7 LDLNLISAKHLKDVHLISKMDVYAVVSISGDHTIKKQKVKSHVDRSGGSNPTWNFPIKFTFNQSLA-QQNRLTLDFKIKS   85 (305)
Q Consensus         7 L~V~vvsA~dL~~~~~~gk~dpYv~v~l~~~~~~~~~~~kT~v~k~~~~nP~Wne~f~f~v~~~~~-~~~~~~L~v~V~d   85 (305)
                      ++|+|++|++|...+..+++||||+|++..      .+.||+++++ +.||+|||+|.|.+..... +.....|.|+|||
T Consensus         1 ~~V~V~~A~~L~~~d~~g~~dpYv~v~l~~------~~~kT~v~~~-t~nP~Wne~f~F~v~~~~~~~~~~~~l~~~v~d   73 (126)
T cd08682           1 VQVTVLQARGLLCKGKSGTNDAYVIIQLGK------EKYSTSVKEK-TTSPVWKEECSFELPGLLSGNGNRATLQLTVMH   73 (126)
T ss_pred             CEEEEEECcCCcCCCCCcCCCceEEEEECC------eeeeeeeecC-CCCCEeCceEEEEecCcccCCCcCCEEEEEEEE
Confidence            579999999999888889999999999965      6789999988 7999999999999976311 0123589999999


Q ss_pred             cCCC-CCcceeEEEEeCcccccccCCCCCCCCCcceEEEEEeecCC---CCCccEEEEEEE
Q 021949           86 DGLL-GDKTVGEVIVPIKELLDSSSSSSSGDAKSMKFVTYQVRSSS---GKPKGELHFSYK  142 (305)
Q Consensus        86 ~~~~-~d~~IG~~~vpL~~l~~~~~~~~~~~g~~~~~~~~~l~~~~---g~~~G~l~lsl~  142 (305)
                      ++.+ +|++||++.|+|.++....    ..    ....||.|....   .+.+|+|+|+|+
T Consensus        74 ~~~~~~d~~iG~~~i~l~~l~~~~----~~----~~~~W~~L~~~~~~~~~~~Gei~l~~~  126 (126)
T cd08682          74 RNLLGLDKFLGQVSIPLNDLDEDK----GR----RRTRWFKLESKPGKDDKERGEIEVDIQ  126 (126)
T ss_pred             ccccCCCceeEEEEEEHHHhhccC----CC----cccEEEECcCCCCCCccccceEEEEeC
Confidence            9888 6899999999999997322    11    246789987533   356899999874

Rab GTPases recruit various effector proteins to organelles and vesicles. Rab11-family interacting proteins (FIPs) are involved in mediating the role of Rab11. FIPs can be divided into three classes: class I FIPs (Rip11a, Rip11b, RCP, and FIP2) which contain a C2 domain after N-terminus of the protein, class II FIPs (FIP3 and FIP4) which contain two EF-hands and a proline rich region, and class III FIPs (FIP1) which exhibits no homology to known protein domains. All FIP proteins contain a highly conserved, 20-amino acid motif at the C-terminus of the protein, known as Rab11/25 binding domain (RBD). Class I FIPs are thought to bind to endocytic membranes via their C2 domain, which interacts directly with phospholipids. Class II FIPs do not have any membrane binding domains leaving much to speculate about the mechanism involving FIP3 and FIP4 interactions with endocytic membranes. The member

>cd04033 C2_NEDD4_NEDD4L C2 domain present in the Human neural precursor cell-expressed, developmentally down-regulated 4 (NEDD4) and NEDD4-like (NEDD4L/NEDD42)

Probab=99.85  E-value=2.5e-20  Score=152.03  Aligned_cols=129  Identities=22%  Similarity=0.391  Sum_probs=103.0

Q ss_pred             eEEEEEEEecCCCCCCCCCCCCcEEEEEEecCC-CCCCceEEeEecCCCCCCCeeeceEEEEeccchhccCceEEEEEEE
Q 021949            6 ALDLNLISAKHLKDVHLISKMDVYAVVSISGDH-TIKKQKVKSHVDRSGGSNPTWNFPIKFTFNQSLAQQNRLTLDFKIK   84 (305)
Q Consensus         6 ~L~V~vvsA~dL~~~~~~gk~dpYv~v~l~~~~-~~~~~~~kT~v~k~~~~nP~Wne~f~f~v~~~~~~~~~~~L~v~V~   84 (305)
                      .|+|+|++|++|...+..++.||||+|++.+.. .....+.+|+++++ +.||.|||+|.|.+....     ..|.|+||
T Consensus         1 ~L~v~Vi~a~~L~~~d~~~~~Dpyv~v~~~~~~~~~~~~~~kT~v~~~-t~nP~Wne~f~f~~~~~~-----~~l~~~v~   74 (133)
T cd04033           1 ILRVKVLAGIDLAKKDIFGASDPYVKISLYDPDGNGEIDSVQTKTIKK-TLNPKWNEEFFFRVNPRE-----HRLLFEVF   74 (133)
T ss_pred             CEEEEEEEeECCCcccCCCCcCcEEEEEEECCCCCCcccceeeeEEcC-CCCCcEeeEEEEEEcCCC-----CEEEEEEE
Confidence            489999999999999888999999999998641 11123679999887 899999999999986532     47999999


Q ss_pred             ecCCC-CCcceeEEEEeCcccccccCCCCCCCCCcceEEEEEeecC--CCCCccEEEEEEEEe
Q 021949           85 SDGLL-GDKTVGEVIVPIKELLDSSSSSSSGDAKSMKFVTYQVRSS--SGKPKGELHFSYKFS  144 (305)
Q Consensus        85 d~~~~-~d~~IG~~~vpL~~l~~~~~~~~~~~g~~~~~~~~~l~~~--~g~~~G~l~lsl~~~  144 (305)
                      |++.+ .|++||++.++|.++....    ..+.......||.|++.  .++.+|+|+|+++|.
T Consensus        75 d~~~~~~~~~iG~~~i~l~~l~~~~----~~~~~~~~~~~~~l~~~~~~~~~~G~l~~~~~~~  133 (133)
T cd04033          75 DENRLTRDDFLGQVEVPLNNLPTET----PGNERRYTFKDYLLRPRSSKSRVKGHLRLYMAYL  133 (133)
T ss_pred             ECCCCCCCCeeEEEEEEHHHCCCcC----ccccccccchheeeeecCCCCcceeEEEEEEeeC
Confidence            99988 7899999999999998643    21111235678888864  567899999999984

Nedd4 and Nedd4-2 are two of the nine members of the Human Nedd4 family. All vertebrates appear to have both Nedd4 and Nedd4-2 genes. They are thought to participate in the regulation of epithelial Na+ channel (ENaC) activity. They also have identical specificity for ubiquitin conjugating enzymes (E2). Nedd4 and Nedd4-2 are composed of a C2 domain, 2-4 WW domains, and a ubiquitin ligase Hect domain. Their WW domains can bind PPxY (PY) or LPSY motifs, and in vitro studies suggest that WW3 and WW4 of both proteins bind PY motifs in the key substrates, with WW3 generally exhibiting higher affinity. Most Nedd4 family members, especially Nedd4-2, also have multiple splice variants, which might play different roles in regulating their substrates. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen

>cd04046 C2_Calpain C2 domain present in Calpain proteins

Probab=99.84  E-value=8.2e-20  Score=148.06  Aligned_cols=119  Identities=17%  Similarity=0.260  Sum_probs=99.4

Q ss_pred             cceEEEEEEEecCCCCCCCCCCCCcEEEEEEecCCCCCCceEEeEecCCCCCCCeeeceEEEEeccchhccCceEEEEEE
Q 021949            4 YRALDLNLISAKHLKDVHLISKMDVYAVVSISGDHTIKKQKVKSHVDRSGGSNPTWNFPIKFTFNQSLAQQNRLTLDFKI   83 (305)
Q Consensus         4 ~~~L~V~vvsA~dL~~~~~~gk~dpYv~v~l~~~~~~~~~~~kT~v~k~~~~nP~Wne~f~f~v~~~~~~~~~~~L~v~V   83 (305)
                      +..|+|+|++|++|+..+.++++||||++++.+      .+++|+++++ +.||+|||+|.|.+....     ..|+|+|
T Consensus         2 ~~~~~V~v~~A~~L~~~d~~g~~dPyv~v~~~~------~~~kT~v~~~-t~nP~Wne~f~f~~~~~~-----~~l~i~V   69 (126)
T cd04046           2 QVVTQVHVHSAEGLSKQDSGGGADPYVIIKCEG------ESVRSPVQKD-TLSPEFDTQAIFYRKKPR-----SPIKIQV   69 (126)
T ss_pred             cEEEEEEEEeCcCCCCCCCCCCcCccEEEEECC------EEEEeCccCC-CCCCcccceEEEEecCCC-----CEEEEEE
Confidence            568999999999999988889999999999875      5789999887 899999999999886532     5899999


Q ss_pred             EecCCCCCcceeEEEEeCcccccccCCCCCCCCCcceEEEEEee----cCCCCCccEEEEEEEEecc
Q 021949           84 KSDGLLGDKTVGEVIVPIKELLDSSSSSSSGDAKSMKFVTYQVR----SSSGKPKGELHFSYKFSEP  146 (305)
Q Consensus        84 ~d~~~~~d~~IG~~~vpL~~l~~~~~~~~~~~g~~~~~~~~~l~----~~~g~~~G~l~lsl~~~~~  146 (305)
                      ||++.++|++||++.+++.++...            ...+|.|.    +.+++..|+|.|++.+.+.
T Consensus        70 ~d~~~~~d~~lG~~~~~l~~~~~~------------~~~~~~l~~~~~~~~~~~~G~i~~~~~~~~~  124 (126)
T cd04046          70 WNSNLLCDEFLGQATLSADPNDSQ------------TLRTLPLRKRGRDAAGEVPGTISVKVTSSDD  124 (126)
T ss_pred             EECCCCCCCceEEEEEecccCCCc------------CceEEEcccCCCCCCCCCCCEEEEEEEEccc
Confidence            999888899999999999875421            13445553    3578899999999988764

A single C2 domain is found in calpains (EC 3.4.22.52, EC 3.4.22.53), calcium-dependent, non-lysosomal cysteine proteases. Caplains are classified as belonging to Clan CA by MEROPS and include six families: C1, C2, C10, C12, C28, and C47. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of pic

>cd08379 C2D_MCTP_PRT_plant C2 domain fourth repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset

Probab=99.84  E-value=5.2e-20  Score=149.11  Aligned_cols=112  Identities=21%  Similarity=0.310  Sum_probs=93.8

Q ss_pred             eEEEEEEEecC---CCCCCCCCCCCcEEEEEEecCCCCCCceEEeEecCCCCCCCeeeceEEEEeccchhccCceEEEEE
Q 021949            6 ALDLNLISAKH---LKDVHLISKMDVYAVVSISGDHTIKKQKVKSHVDRSGGSNPTWNFPIKFTFNQSLAQQNRLTLDFK   82 (305)
Q Consensus         6 ~L~V~vvsA~d---L~~~~~~gk~dpYv~v~l~~~~~~~~~~~kT~v~k~~~~nP~Wne~f~f~v~~~~~~~~~~~L~v~   82 (305)
                      .|+|+|++|++   |+..+..+++||||+|++++      ++.||+++++ +.||+|||+|.|.+....     ..|+|+
T Consensus         1 ~L~v~v~~A~~~~~l~~~d~~g~sDPYv~i~~g~------~~~rTk~~~~-~~nP~WnE~f~f~v~~~~-----~~l~v~   68 (126)
T cd08379           1 ILEVGILGAQGLDVLRAKDGRGSTDAYCVAKYGP------KWVRTRTVED-SSNPRWNEQYTWPVYDPC-----TVLTVG   68 (126)
T ss_pred             CeEEEEEEeECCccccccccCCCCCeeEEEEECC------EEeEcCcccC-CCCCcceeEEEEEecCCC-----CEEEEE
Confidence            38999999999   78888889999999999975      6889999988 799999999999996543     389999


Q ss_pred             EEecCCC-------CCcceeEEEEeCcccccccCCCCCCCCCcceEEEEEeecCC---CCCccEEEE
Q 021949           83 IKSDGLL-------GDKTVGEVIVPIKELLDSSSSSSSGDAKSMKFVTYQVRSSS---GKPKGELHF  139 (305)
Q Consensus        83 V~d~~~~-------~d~~IG~~~vpL~~l~~~~~~~~~~~g~~~~~~~~~l~~~~---g~~~G~l~l  139 (305)
                      |||++.+       +|++||++.|+|.++..+.          ....||+|+..+   .+..|.|++
T Consensus        69 V~d~d~~~~~~~~~~dd~lG~~~i~l~~l~~~~----------~~~~~~~L~~~~~~~~~~~g~l~~  125 (126)
T cd08379          69 VFDNSQSHWKEAVQPDVLIGKVRIRLSTLEDDR----------VYAHSYPLLSLNPSGVKKMGELEC  125 (126)
T ss_pred             EEECCCccccccCCCCceEEEEEEEHHHccCCC----------EEeeEEEeEeCCCCCccCCcEEEe
Confidence            9999875       7999999999999988533          347789988643   456777764

MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphate

>cd04015 C2_plant_PLD C2 domain present in plant phospholipase D (PLD)

Probab=99.83  E-value=1.2e-19  Score=152.76  Aligned_cols=120  Identities=23%  Similarity=0.439  Sum_probs=99.2

Q ss_pred             cceEEEEEEEecCCCCCC------------------------------CCCCCCcEEEEEEecCCCCCCceEEeEecCCC
Q 021949            4 YRALDLNLISAKHLKDVH------------------------------LISKMDVYAVVSISGDHTIKKQKVKSHVDRSG   53 (305)
Q Consensus         4 ~~~L~V~vvsA~dL~~~~------------------------------~~gk~dpYv~v~l~~~~~~~~~~~kT~v~k~~   53 (305)
                      +++|+|+|++|++|.+.+                              ..+++||||+|++.+     .+..||+++++ 
T Consensus         6 hG~L~v~I~eA~~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~sDPYv~V~l~~-----~~~~rT~v~~~-   79 (158)
T cd04015           6 HGTLDVTIYEADNLPNMDMFSEKLRRFFSKLVGCSEPTLKRPSSHRHVGKITSDPYATVDLAG-----ARVARTRVIEN-   79 (158)
T ss_pred             eeeeEEEEEEeccCCCcccccchhhHHHHHHHhhcccccccccccccCCCCCcCeEEEEEECC-----eEeeEEEEeCC-
Confidence            689999999999998876                              246689999999976     24679999887 


Q ss_pred             CCCCeeeceEEEEeccchhccCceEEEEEEEecCCCCCcceeEEEEeCcccccccCCCCCCCCCcceEEEEEeecCCCC-
Q 021949           54 GSNPTWNFPIKFTFNQSLAQQNRLTLDFKIKSDGLLGDKTVGEVIVPIKELLDSSSSSSSGDAKSMKFVTYQVRSSSGK-  132 (305)
Q Consensus        54 ~~nP~Wne~f~f~v~~~~~~~~~~~L~v~V~d~~~~~d~~IG~~~vpL~~l~~~~~~~~~~~g~~~~~~~~~l~~~~g~-  132 (305)
                      +.||+|||+|.|.+....     ..|.|+|||++.+++++||++.|+|+++....          ....||.|....++ 
T Consensus        80 ~~nP~WnE~F~~~~~~~~-----~~l~~~V~d~d~~~~~~IG~~~i~l~~l~~g~----------~~~~w~~L~~~~~~~  144 (158)
T cd04015          80 SENPVWNESFHIYCAHYA-----SHVEFTVKDNDVVGAQLIGRAYIPVEDLLSGE----------PVEGWLPILDSNGKP  144 (158)
T ss_pred             CCCCccceEEEEEccCCC-----CEEEEEEEeCCCcCCcEEEEEEEEhHHccCCC----------CcceEEECcCCCCCC
Confidence            699999999999986543     47999999999888899999999999998533          24678999875443 


Q ss_pred             --CccEEEEEEEEe
Q 021949          133 --PKGELHFSYKFS  144 (305)
Q Consensus       133 --~~G~l~lsl~~~  144 (305)
                        ..++|+|+++|.
T Consensus       145 ~~~~~~l~v~~~f~  158 (158)
T cd04015         145 PKPGAKIRVSLQFT  158 (158)
T ss_pred             CCCCCEEEEEEEEC
Confidence              468999999984

PLD hydrolyzes terminal phosphodiester bonds in diester glycerophospholipids resulting in the degradation of phospholipids. In vitro PLD transfers phosphatidic acid to primary alcohols. In plants PLD plays a role in germination, seedling growth, phosphatidylinositol metabolism, and changes in phospholipid composition. There is a single Ca(2+)/phospholipid-binding C2 domain in PLD. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins whic

>cd08678 C2_C21orf25-like C2 domain found in the Human chromosome 21 open reading frame 25 (C21orf25) protein

Probab=99.83  E-value=2e-19  Score=145.74  Aligned_cols=119  Identities=24%  Similarity=0.400  Sum_probs=98.5

Q ss_pred             EEEEEEEecCCCCCCCCCCCCcEEEEEEecCCCCCCceEEeEecCCCCCCCeeeceEEEEeccchhccCceEEEEEEEec
Q 021949            7 LDLNLISAKHLKDVHLISKMDVYAVVSISGDHTIKKQKVKSHVDRSGGSNPTWNFPIKFTFNQSLAQQNRLTLDFKIKSD   86 (305)
Q Consensus         7 L~V~vvsA~dL~~~~~~gk~dpYv~v~l~~~~~~~~~~~kT~v~k~~~~nP~Wne~f~f~v~~~~~~~~~~~L~v~V~d~   86 (305)
                      |.|+|++|++|..  .++++||||++++...    ..+.+|+++++ +.||+|||+|.|.+....     ..|.|+|||+
T Consensus         1 l~v~v~~A~~L~~--~~g~~dpyv~v~~~~~----~~~~kT~v~~~-t~nP~Wne~f~f~~~~~~-----~~l~~~v~d~   68 (126)
T cd08678           1 LLVKNIKANGLSE--AAGSSNPYCVLEMDEP----PQKYQSSTQKN-TSNPFWDEHFLFELSPNS-----KELLFEVYDN   68 (126)
T ss_pred             CEEEEEEecCCCC--CCCCcCCEEEEEECCC----CcEEEeEEEec-CCCCccCceEEEEeCCCC-----CEEEEEEEEC
Confidence            6899999999987  6689999999999642    25789999887 799999999999996432     4799999999


Q ss_pred             CCC-CCcceeEEEEeCcccccccCCCCCCCCCcceEEEEEeecC---CCCCccEEEEEEEEeccC
Q 021949           87 GLL-GDKTVGEVIVPIKELLDSSSSSSSGDAKSMKFVTYQVRSS---SGKPKGELHFSYKFSEPT  147 (305)
Q Consensus        87 ~~~-~d~~IG~~~vpL~~l~~~~~~~~~~~g~~~~~~~~~l~~~---~g~~~G~l~lsl~~~~~~  147 (305)
                      +.. +|++||++.|+|.++....    .      ...||.|...   +.+.+|+|+|++.|.+..
T Consensus        69 ~~~~~~~~lG~~~i~l~~l~~~~----~------~~~~~~L~~~~~~~~~~~G~l~l~~~~~~~~  123 (126)
T cd08678          69 GKKSDSKFLGLAIVPFDELRKNP----S------GRQIFPLQGRPYEGDSVSGSITVEFLFMEPA  123 (126)
T ss_pred             CCCCCCceEEEEEEeHHHhccCC----c------eeEEEEecCCCCCCCCcceEEEEEEEEeccc
Confidence            988 7999999999999998644    1      2567888754   356799999999998764

The members in this cd are named after the Human C21orf25 which contains a single C2 domain. Several other members contain a C1 domain downstream of the C2 domain. No other information on this protein is currently known. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a

>cd08377 C2C_MCTP_PRT C2 domain third repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP)

Probab=99.83  E-value=1.4e-19  Score=144.58  Aligned_cols=115  Identities=17%  Similarity=0.325  Sum_probs=97.6

Q ss_pred             ceEEEEEEEecCCCCCCCCCCCCcEEEEEEecCCCCCCceEEeEecCCCCCCCeeeceEEEEeccchhccCceEEEEEEE
Q 021949            5 RALDLNLISAKHLKDVHLISKMDVYAVVSISGDHTIKKQKVKSHVDRSGGSNPTWNFPIKFTFNQSLAQQNRLTLDFKIK   84 (305)
Q Consensus         5 ~~L~V~vvsA~dL~~~~~~gk~dpYv~v~l~~~~~~~~~~~kT~v~k~~~~nP~Wne~f~f~v~~~~~~~~~~~L~v~V~   84 (305)
                      +.|+|+|++|++|+..+.++++||||++.+..      .+.+|+++++ +.||.|||+|.|.+.+..     ..|.|+||
T Consensus         1 g~l~v~v~~a~~L~~~~~~~~~dPyv~v~~~~------~~~~T~~~~~-t~nP~W~e~f~~~~~~~~-----~~l~~~v~   68 (119)
T cd08377           1 GFLQVKVIRASGLAAADIGGKSDPFCVLELVN------ARLQTHTIYK-TLNPEWNKIFTFPIKDIH-----DVLEVTVY   68 (119)
T ss_pred             CEEEEEEEeeeCCCCCCCCCCCCcEEEEEECC------EeeecceecC-CcCCccCcEEEEEecCcC-----CEEEEEEE
Confidence            57999999999999988889999999999965      4679999887 799999999999986532     48999999


Q ss_pred             ecCCC-CCcceeEEEEeCcccccccCCCCCCCCCcceEEEEEeecC--CCCCccEEEEEEEE
Q 021949           85 SDGLL-GDKTVGEVIVPIKELLDSSSSSSSGDAKSMKFVTYQVRSS--SGKPKGELHFSYKF  143 (305)
Q Consensus        85 d~~~~-~d~~IG~~~vpL~~l~~~~~~~~~~~g~~~~~~~~~l~~~--~g~~~G~l~lsl~~  143 (305)
                      |++.+ .+++||++.++|.++....            ..||.|++.  +.+.+|+|.|+++|
T Consensus        69 d~~~~~~~~~iG~~~~~l~~~~~~~------------~~~~~l~~~~~~~~~~G~i~l~~~~  118 (119)
T cd08377          69 DEDKDKKPEFLGKVAIPLLSIKNGE------------RKWYALKDKKLRTRAKGSILLEMDV  118 (119)
T ss_pred             ECCCCCCCceeeEEEEEHHHCCCCC------------ceEEECcccCCCCceeeEEEEEEEe
Confidence            99886 7899999999999986322            458888764  35689999999987

MCTPs are involved in Ca2+ signaling at the membrane. The cds in this family contain multiple C2 domains as well as a C-terminal PRT domain. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal tran

>cd04036 C2_cPLA2 C2 domain present in cytosolic PhosphoLipase A2 (cPLA2)

Probab=99.83  E-value=1.5e-19  Score=144.95  Aligned_cols=117  Identities=19%  Similarity=0.384  Sum_probs=97.6

Q ss_pred             EEEEEEEecCCCCCCCCCCCCcEEEEEEecCCCCCCceEEeEecCCCCCCCeeeceEEEEeccchhccCceEEEEEEEec
Q 021949            7 LDLNLISAKHLKDVHLISKMDVYAVVSISGDHTIKKQKVKSHVDRSGGSNPTWNFPIKFTFNQSLAQQNRLTLDFKIKSD   86 (305)
Q Consensus         7 L~V~vvsA~dL~~~~~~gk~dpYv~v~l~~~~~~~~~~~kT~v~k~~~~nP~Wne~f~f~v~~~~~~~~~~~L~v~V~d~   86 (305)
                      |+|+|++|++|++.+.++++||||++++.+..   ..+.||+++++ +.||+|||+|.|.+....    ...|.|+|||+
T Consensus         2 L~V~vi~a~~L~~~~~~~~~Dpyv~v~~~~~~---~~~~kT~vv~~-t~nP~Wne~f~f~i~~~~----~~~l~v~v~d~   73 (119)
T cd04036           2 LTVRVLRATNITKGDLLSTPDCYVELWLPTAS---DEKKRTKTIKN-SINPVWNETFEFRIQSQV----KNVLELTVMDE   73 (119)
T ss_pred             eEEEEEEeeCCCccCCCCCCCcEEEEEEcCCC---CccCccceecC-CCCCccceEEEEEeCccc----CCEEEEEEEEC
Confidence            78999999999998888999999999996532   25789999988 799999999999987542    24799999999


Q ss_pred             CCCCCcceeEEEEeCcccccccCCCCCCCCCcceEEEEEeecCCCCCccEEEEEEEEe
Q 021949           87 GLLGDKTVGEVIVPIKELLDSSSSSSSGDAKSMKFVTYQVRSSSGKPKGELHFSYKFS  144 (305)
Q Consensus        87 ~~~~d~~IG~~~vpL~~l~~~~~~~~~~~g~~~~~~~~~l~~~~g~~~G~l~lsl~~~  144 (305)
                      +.++|++||++.++|.++..+.          ....||.|..   +.+|+|+|+|.+.
T Consensus        74 d~~~~~~iG~~~~~l~~l~~g~----------~~~~~~~L~~---~~~g~l~~~~~~~  118 (119)
T cd04036          74 DYVMDDHLGTVLFDVSKLKLGE----------KVRVTFSLNP---QGKEELEVEFLLE  118 (119)
T ss_pred             CCCCCcccEEEEEEHHHCCCCC----------cEEEEEECCC---CCCceEEEEEEee
Confidence            8778899999999999987432          3577888864   3589999998874

A single copy of the C2 domain is present in cPLA2 which releases arachidonic acid from membranes initiating the biosynthesis of potent inflammatory mediators such as prostaglandins, leukotrienes, and platelet-activating factor. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants o

>cd08378 C2B_MCTP_PRT_plant C2 domain second repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset

Probab=99.83  E-value=9.8e-20  Score=146.67  Aligned_cols=118  Identities=21%  Similarity=0.291  Sum_probs=96.8

Q ss_pred             EEEEEEEecCCCCCCCCCCCCcEEEEEEecCCCCCCceEEeEecCCCCCCCeeeceEEEEeccchhccCceEEEEEEEec
Q 021949            7 LDLNLISAKHLKDVHLISKMDVYAVVSISGDHTIKKQKVKSHVDRSGGSNPTWNFPIKFTFNQSLAQQNRLTLDFKIKSD   86 (305)
Q Consensus         7 L~V~vvsA~dL~~~~~~gk~dpYv~v~l~~~~~~~~~~~kT~v~k~~~~nP~Wne~f~f~v~~~~~~~~~~~L~v~V~d~   86 (305)
                      |.|+|++|++|...    +.||||++.+.+      .+.||+++++ +.||+|||+|.|.+....    ...|.|+|||+
T Consensus         2 L~V~Vi~a~~L~~~----~~Dpyv~v~l~~------~~~kT~v~~~-t~nP~Wne~F~f~~~~~~----~~~L~~~v~d~   66 (121)
T cd08378           2 LYVRVVKARGLPAN----SNDPVVEVKLGN------YKGSTKAIER-TSNPEWNQVFAFSKDRLQ----GSTLEVSVWDK   66 (121)
T ss_pred             EEEEEEEecCCCcc----cCCCEEEEEECC------ccccccccCC-CCCCccceEEEEEcCCCc----CCEEEEEEEeC
Confidence            89999999999876    689999999975      5789999887 799999999999986532    25899999999


Q ss_pred             CCCCCcceeEEEEeCcccccccCCCCCCCCCcceEEEEEeecCC-CCCccEEEEEEEEe
Q 021949           87 GLLGDKTVGEVIVPIKELLDSSSSSSSGDAKSMKFVTYQVRSSS-GKPKGELHFSYKFS  144 (305)
Q Consensus        87 ~~~~d~~IG~~~vpL~~l~~~~~~~~~~~g~~~~~~~~~l~~~~-g~~~G~l~lsl~~~  144 (305)
                      +.+++++||++.|+|.++....    ..++ .....||.|.+.. .+.+|+|+|+|+|.
T Consensus        67 d~~~~~~lG~~~i~l~~l~~~~----~~~~-~~~~~W~~L~~~~~~~~~G~i~l~~~~~  120 (121)
T cd08378          67 DKAKDDFLGGVCFDLSEVPTRV----PPDS-PLAPQWYRLEDKKGGRVGGELMLAVWFG  120 (121)
T ss_pred             CCCcCceeeeEEEEhHhCcCCC----CCCC-CCCcceEEccCCCCCccceEEEEEEEec
Confidence            8778999999999999997533    2121 2346789888743 57899999999985

MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphate

>cd08375 C2_Intersectin C2 domain present in Intersectin

Probab=99.82  E-value=2.4e-19  Score=147.33  Aligned_cols=122  Identities=20%  Similarity=0.301  Sum_probs=99.1

Q ss_pred             ccceEEEEEEEecCCCCCCCCCCCCcEEEEEEecCCCCCCceEEeEecCCCCCCCeeeceEEEEeccchhccCceEEEEE
Q 021949            3 SYRALDLNLISAKHLKDVHLISKMDVYAVVSISGDHTIKKQKVKSHVDRSGGSNPTWNFPIKFTFNQSLAQQNRLTLDFK   82 (305)
Q Consensus         3 ~~~~L~V~vvsA~dL~~~~~~gk~dpYv~v~l~~~~~~~~~~~kT~v~k~~~~nP~Wne~f~f~v~~~~~~~~~~~L~v~   82 (305)
                      ..+.|+|+|++|++|+..+.++++||||++.+..      .+++|+++++ +.||.|||+|.|.+....    ...|.|+
T Consensus        13 ~~G~L~V~Vi~A~~L~~~d~~g~~DPYv~v~~~~------~~~kT~vi~~-t~nP~Wne~f~f~v~~~~----~~~l~i~   81 (136)
T cd08375          13 GIGRLMVVIVEGRDLKPCNSNGKSDPYCEVSMGS------QEHKTKVVSD-TLNPKWNSSMQFFVKDLE----QDVLCIT   81 (136)
T ss_pred             CcEEEEEEEEEeeCCCCCCCCCCcCcEEEEEECC------EeeeccccCC-CCCCccCceEEEEecCcc----CCEEEEE
Confidence            4588999999999999988889999999999964      6889999888 899999999999996532    2489999


Q ss_pred             EEecCCC-CCcceeEEEEeCcccccccCCCCCCCCCcceEEEEEeecCCCCCccEEEEEEEE
Q 021949           83 IKSDGLL-GDKTVGEVIVPIKELLDSSSSSSSGDAKSMKFVTYQVRSSSGKPKGELHFSYKF  143 (305)
Q Consensus        83 V~d~~~~-~d~~IG~~~vpL~~l~~~~~~~~~~~g~~~~~~~~~l~~~~g~~~G~l~lsl~~  143 (305)
                      |||++.+ .|++||++.|+|.++....    ... +...+.+..+   +++.+|+|+|++.|
T Consensus        82 V~D~d~~~~d~~lG~~~i~l~~l~~~~----~~~-~~~~~~~~~~---~~~~~g~i~l~~~~  135 (136)
T cd08375          82 VFDRDFFSPDDFLGRTEIRVADILKET----KES-KGPITKRLLL---HEVPTGEVVVKLDL  135 (136)
T ss_pred             EEECCCCCCCCeeEEEEEEHHHhcccc----ccC-CCcEEEEecc---ccccceeEEEEEEe
Confidence            9999987 7899999999999998532    111 1122344444   46788999999987

A single instance of the C2 domain is located C terminally in the intersectin protein. Intersectin functions as a scaffolding protein, providing a link between the actin cytoskeleton and the components of endocytosis and plays a role in signal transduction. In addition to C2, intersectin contains several additional domains including: Eps15 homology domains, SH3 domains, a RhoGEF domain, and a PH domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking pro

>cd04044 C2A_Tricalbin-like C2 domain first repeat present in Tricalbin-like proteins

Probab=99.82  E-value=2.4e-19  Score=144.13  Aligned_cols=121  Identities=26%  Similarity=0.416  Sum_probs=97.6

Q ss_pred             ceEEEEEEEecCCCCCCCC-CCCCcEEEEEEecCCCCCCceEEeEecCCCCCCCeeeceEEEEeccchhccCceEEEEEE
Q 021949            5 RALDLNLISAKHLKDVHLI-SKMDVYAVVSISGDHTIKKQKVKSHVDRSGGSNPTWNFPIKFTFNQSLAQQNRLTLDFKI   83 (305)
Q Consensus         5 ~~L~V~vvsA~dL~~~~~~-gk~dpYv~v~l~~~~~~~~~~~kT~v~k~~~~nP~Wne~f~f~v~~~~~~~~~~~L~v~V   83 (305)
                      +.|+|+|++|++|+..+.+ +.+||||++++...    ..+.+|+++++ +.||.|||+|.|.+...     ...|.|+|
T Consensus         2 g~l~v~v~~a~~L~~~~~~~~~~dpyv~v~~~~~----~~~~kT~~~~~-~~~P~Wne~~~~~v~~~-----~~~l~~~v   71 (124)
T cd04044           2 GVLAVTIKSARGLKGSDIIGGTVDPYVTFSISNR----RELARTKVKKD-TSNPVWNETKYILVNSL-----TEPLNLTV   71 (124)
T ss_pred             eEEEEEEEcccCCCcccccCCCCCCeEEEEECCC----CcceEeeeecC-CCCCcceEEEEEEeCCC-----CCEEEEEE
Confidence            6899999999999976544 67899999999763    25789999887 89999999999998732     25899999


Q ss_pred             EecCCC-CCcceeEEEEeCcccccccCCCCCCCCCcceEEEEEeecCCCCCccEEEEEEEEec
Q 021949           84 KSDGLL-GDKTVGEVIVPIKELLDSSSSSSSGDAKSMKFVTYQVRSSSGKPKGELHFSYKFSE  145 (305)
Q Consensus        84 ~d~~~~-~d~~IG~~~vpL~~l~~~~~~~~~~~g~~~~~~~~~l~~~~g~~~G~l~lsl~~~~  145 (305)
                      ||++.+ +|++||++.++|.++....    .     ....++.+. .+++.+|+|+|+++|.+
T Consensus        72 ~d~~~~~~d~~iG~~~~~l~~l~~~~----~-----~~~~~~~~~-~~~k~~G~i~~~l~~~p  124 (124)
T cd04044          72 YDFNDKRKDKLIGTAEFDLSSLLQNP----E-----QENLTKNLL-RNGKPVGELNYDLRFFP  124 (124)
T ss_pred             EecCCCCCCceeEEEEEEHHHhccCc----c-----ccCcchhhh-cCCccceEEEEEEEeCC
Confidence            999887 7899999999999998644    1     112233333 57888999999999965

5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain.

>cd08400 C2_Ras_p21A1 C2 domain present in RAS p21 protein activator 1 (RasA1)

Probab=99.82  E-value=4.7e-19  Score=143.68  Aligned_cols=119  Identities=24%  Similarity=0.357  Sum_probs=95.9

Q ss_pred             cceEEEEEEEecCCCCCCCCCCCCcEEEEEEecCCCCCCceEEeEecCCCCCCCeeeceEEEEeccchhccCceEEEEEE
Q 021949            4 YRALDLNLISAKHLKDVHLISKMDVYAVVSISGDHTIKKQKVKSHVDRSGGSNPTWNFPIKFTFNQSLAQQNRLTLDFKI   83 (305)
Q Consensus         4 ~~~L~V~vvsA~dL~~~~~~gk~dpYv~v~l~~~~~~~~~~~kT~v~k~~~~nP~Wne~f~f~v~~~~~~~~~~~L~v~V   83 (305)
                      .+.|+|+|++|+||+..   +.+||||+|.+.+     .++.+|++ +. +.||.|||+|.|.+.....    ..|+|.|
T Consensus         3 ~~~L~V~Vi~A~~L~~~---~~~DPYv~v~l~~-----~~~~kT~v-~~-~~nP~WnE~f~f~~~~~~~----~~l~v~v   68 (126)
T cd08400           3 VRSLQLNVLEAHKLPVK---HVPHPYCVISLNE-----VKVARTKV-RE-GPNPVWSEEFVFDDLPPDV----NSFTISL   68 (126)
T ss_pred             eeEEEEEEEEeeCCCCC---CCCCeeEEEEECC-----EeEEEeec-CC-CCCCccCCEEEEecCCCCc----CEEEEEE
Confidence            46899999999999874   4689999999965     35678887 44 6999999999998654322    3688999


Q ss_pred             EecCCC-CCcceeEEEEeCcccccccCCCCCCCCCcceEEEEEeecCC---CCCccEEEEEEEEecc
Q 021949           84 KSDGLL-GDKTVGEVIVPIKELLDSSSSSSSGDAKSMKFVTYQVRSSS---GKPKGELHFSYKFSEP  146 (305)
Q Consensus        84 ~d~~~~-~d~~IG~~~vpL~~l~~~~~~~~~~~g~~~~~~~~~l~~~~---g~~~G~l~lsl~~~~~  146 (305)
                      ||++.. +|++||++.|+|.++....          ....||.|...+   .+..|+|+|+++|.+.
T Consensus        69 ~d~~~~~~d~~iG~v~i~l~~l~~~~----------~~~~W~~L~~~~~~~~~~~G~i~l~l~~~~~  125 (126)
T cd08400          69 SNKAKRSKDSEIAEVTVQLSKLQNGQ----------ETDEWYPLSSASPLKGGEWGSLRIRARYSHE  125 (126)
T ss_pred             EECCCCCCCCeEEEEEEEHhHccCCC----------cccEeEEcccCCCCCCCcCcEEEEEEEEEcc
Confidence            999887 7999999999999987533          246788887643   4567999999999875

RasA1 is a GAP1 (GTPase activating protein 1), a Ras-specific GAP member, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. RasA1 contains a C2 domain, a Ras-GAP domain, a pleckstrin homology (PH)-like domain, a SH3 domain, and 2 SH2 domains. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficki

>cd04025 C2B_RasA1_RasA4 C2 domain second repeat present in RasA1 and RasA4

Probab=99.82  E-value=2.1e-19  Score=144.83  Aligned_cols=116  Identities=19%  Similarity=0.311  Sum_probs=96.3

Q ss_pred             eEEEEEEEecCCCCCCCCCCCCcEEEEEEecCCCCCCceEEeEecCCCCCCCeeeceEEEEeccchhccCceEEEEEEEe
Q 021949            6 ALDLNLISAKHLKDVHLISKMDVYAVVSISGDHTIKKQKVKSHVDRSGGSNPTWNFPIKFTFNQSLAQQNRLTLDFKIKS   85 (305)
Q Consensus         6 ~L~V~vvsA~dL~~~~~~gk~dpYv~v~l~~~~~~~~~~~kT~v~k~~~~nP~Wne~f~f~v~~~~~~~~~~~L~v~V~d   85 (305)
                      +|+|+|++|++|...+.++.+||||+|++.+      .+.+|+++++ +.||.|||+|.|.+....    ...|.|+|||
T Consensus         1 ~L~v~vi~a~~L~~~d~~~~~DPyv~v~~~~------~~~kT~v~~~-t~nP~Wne~f~f~~~~~~----~~~l~~~v~d   69 (123)
T cd04025           1 RLRCHVLEARDLAPKDRNGTSDPFVRVFYNG------QTLETSVVKK-SCYPRWNEVFEFELMEGA----DSPLSVEVWD   69 (123)
T ss_pred             CEEEEEEEeeCCCCCCCCCCcCceEEEEECC------EEEeceeecC-CCCCccCcEEEEEcCCCC----CCEEEEEEEE
Confidence            4899999999999988888999999999865      5789999887 799999999999997643    2579999999


Q ss_pred             cCCC-CCcceeEEEEeCcccccccCCCCCCCCCcceEEEEEeec------CCCCCccEEEEEEE
Q 021949           86 DGLL-GDKTVGEVIVPIKELLDSSSSSSSGDAKSMKFVTYQVRS------SSGKPKGELHFSYK  142 (305)
Q Consensus        86 ~~~~-~d~~IG~~~vpL~~l~~~~~~~~~~~g~~~~~~~~~l~~------~~g~~~G~l~lsl~  142 (305)
                      ++.+ .+++||++.++|.++....          ....||.|..      ++++..|.|+|.|+
T Consensus        70 ~~~~~~~~~iG~~~~~l~~l~~~~----------~~~~w~~L~~~~~~~~~~~~~~G~l~~~~~  123 (123)
T cd04025          70 WDLVSKNDFLGKVVFSIQTLQQAK----------QEEGWFRLLPDPRAEEESGGNLGSLRLKVR  123 (123)
T ss_pred             CCCCCCCcEeEEEEEEHHHcccCC----------CCCCEEECCCCCCCCccccCceEEEEEEeC
Confidence            9887 6899999999999987533          1255777775      35677899998874

RasA1 and RasA4 are GAP1s (GTPase activating protein 1s ), Ras-specific GAP members, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. Both proteins contain two C2 domains, a Ras-GAP domain, a plextrin homology (PH)-like domain, and a Bruton's Tyrosine Kinase (BTK) zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such a

>cd08401 C2A_RasA2_RasA3 C2 domain first repeat present in RasA2 and RasA3

Probab=99.82  E-value=4.1e-19  Score=143.05  Aligned_cols=117  Identities=17%  Similarity=0.296  Sum_probs=96.2

Q ss_pred             eEEEEEEEecCCCCCC-CCCCCCcEEEEEEecCCCCCCceEEeEecCCCCCCCeeeceEEEEeccchhccCceEEEEEEE
Q 021949            6 ALDLNLISAKHLKDVH-LISKMDVYAVVSISGDHTIKKQKVKSHVDRSGGSNPTWNFPIKFTFNQSLAQQNRLTLDFKIK   84 (305)
Q Consensus         6 ~L~V~vvsA~dL~~~~-~~gk~dpYv~v~l~~~~~~~~~~~kT~v~k~~~~nP~Wne~f~f~v~~~~~~~~~~~L~v~V~   84 (305)
                      .|.|+|++|++|+..+ ..+.+||||+|.+..     ..+.+|+++++ +.||.|||+|.|.+.+..     ..|.|+||
T Consensus         1 ~l~v~v~~a~~L~~~~~~~g~sDpYv~v~l~~-----~~~~kT~v~~k-t~~P~WnE~F~f~v~~~~-----~~l~~~v~   69 (121)
T cd08401           1 SLKIKIGEAKNLPPRSGPNKMRDCYCTVNLDQ-----EEVFRTKTVEK-SLCPFFGEDFYFEIPRTF-----RHLSFYIY   69 (121)
T ss_pred             CeEEEEEEccCCCCCCCCCCCcCcEEEEEECC-----ccEEEeeEEEC-CCCCccCCeEEEEcCCCC-----CEEEEEEE
Confidence            3789999999999864 347889999999964     25789999887 899999999999997542     48999999


Q ss_pred             ecCCC-CCcceeEEEEeCcccccccCCCCCCCCCcceEEEEEeec--CCCCCccEEEEEEEE
Q 021949           85 SDGLL-GDKTVGEVIVPIKELLDSSSSSSSGDAKSMKFVTYQVRS--SSGKPKGELHFSYKF  143 (305)
Q Consensus        85 d~~~~-~d~~IG~~~vpL~~l~~~~~~~~~~~g~~~~~~~~~l~~--~~g~~~G~l~lsl~~  143 (305)
                      |++.+ +|++||++.++|+++....          ....||.|..  .+++.+|+|+|+++|
T Consensus        70 d~~~~~~~~~iG~~~i~l~~l~~~~----------~~~~w~~L~~~~~~~~~~G~i~l~~~~  121 (121)
T cd08401          70 DRDVLRRDSVIGKVAIKKEDLHKYY----------GKDTWFPLQPVDADSEVQGKVHLELRL  121 (121)
T ss_pred             ECCCCCCCceEEEEEEEHHHccCCC----------CcEeeEEEEccCCCCcccEEEEEEEEC
Confidence            99988 7899999999999987433          2466888775  345679999999875

RasA2 and RasA3 are GAP1s (GTPase activating protein 1s ), Ras-specific GAP members, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. RasA2 and RasA3 are both inositol 1,3,4,5-tetrakisphosphate-binding proteins and contain an N-terminal C2 domain, a Ras-GAP domain, a pleckstrin-homology (PH) domain which localizes it to the plasma membrane, and Bruton's Tyrosine Kinase (BTK) a zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular p

>cd08376 C2B_MCTP_PRT C2 domain second repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP)

Probab=99.81  E-value=6e-19  Score=140.52  Aligned_cols=114  Identities=16%  Similarity=0.251  Sum_probs=96.8

Q ss_pred             eEEEEEEEecCCCCCCCCCCCCcEEEEEEecCCCCCCceEEeEecCCCCCCCeeeceEEEEeccchhccCceEEEEEEEe
Q 021949            6 ALDLNLISAKHLKDVHLISKMDVYAVVSISGDHTIKKQKVKSHVDRSGGSNPTWNFPIKFTFNQSLAQQNRLTLDFKIKS   85 (305)
Q Consensus         6 ~L~V~vvsA~dL~~~~~~gk~dpYv~v~l~~~~~~~~~~~kT~v~k~~~~nP~Wne~f~f~v~~~~~~~~~~~L~v~V~d   85 (305)
                      .|+|+|++|++|+..+.++..||||++++.+      .+.+|+++++ +.||.|||+|.|.+....    ...|.|+|||
T Consensus         1 ~~~V~v~~a~~L~~~~~~~~~dPyv~v~~~~------~~~kT~v~~~-t~nP~Wne~f~f~~~~~~----~~~l~v~v~d   69 (116)
T cd08376           1 VVTIVLVEGKNLPPMDDNGLSDPYVKFRLGN------EKYKSKVCSK-TLNPQWLEQFDLHLFDDQ----SQILEIEVWD   69 (116)
T ss_pred             CEEEEEEEEECCCCCCCCCCCCcEEEEEECC------EeEecccccC-CCCCceeEEEEEEecCCC----CCEEEEEEEE
Confidence            4789999999999988888999999999964      6789999887 899999999999986542    2589999999


Q ss_pred             cCCC-CCcceeEEEEeCcccccccCCCCCCCCCcceEEEEEeecCCCCCccEEEEEEEEe
Q 021949           86 DGLL-GDKTVGEVIVPIKELLDSSSSSSSGDAKSMKFVTYQVRSSSGKPKGELHFSYKFS  144 (305)
Q Consensus        86 ~~~~-~d~~IG~~~vpL~~l~~~~~~~~~~~g~~~~~~~~~l~~~~g~~~G~l~lsl~~~  144 (305)
                      ++.+ .|++||++.++|.++....          ....|+.|...    +|+|+|.+++.
T Consensus        70 ~~~~~~~~~iG~~~~~l~~l~~~~----------~~~~w~~L~~~----~G~~~~~~~~~  115 (116)
T cd08376          70 KDTGKKDEFIGRCEIDLSALPREQ----------THSLELELEDG----EGSLLLLLTLT  115 (116)
T ss_pred             CCCCCCCCeEEEEEEeHHHCCCCC----------ceEEEEEccCC----CcEEEEEEEec
Confidence            9987 7999999999999987533          35788988743    59999998874

MCTPs are involved in Ca2+ signaling at the membrane. MCTP is composed of a variable N-terminal sequence, three C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular protei

>KOG1030 consensus Predicted Ca2+-dependent phospholipid-binding protein [General function prediction only]

Probab=99.80  E-value=2.1e-19  Score=149.06  Aligned_cols=95  Identities=25%  Similarity=0.428  Sum_probs=86.4

Q ss_pred             CccceEEEEEEEecCCCCCCCCCCCCcEEEEEEecCCCCCCceEEeEecCCCCCCCeeeceEEEEeccchhccCceEEEE
Q 021949            2 ASYRALDLNLISAKHLKDVHLISKMDVYAVVSISGDHTIKKQKVKSHVDRSGGSNPTWNFPIKFTFNQSLAQQNRLTLDF   81 (305)
Q Consensus         2 ~~~~~L~V~vvsA~dL~~~~~~gk~dpYv~v~l~~~~~~~~~~~kT~v~k~~~~nP~Wne~f~f~v~~~~~~~~~~~L~v   81 (305)
                      +..+.|+|+|+++.+|...++.+++||||++.+++      ++.||+++++ ++||+|||+|+|.|.+..     ..|+|
T Consensus         3 ~~vGLL~v~v~~g~~L~~rD~~~sSDPyVVl~lg~------q~lkT~~v~~-n~NPeWNe~ltf~v~d~~-----~~lkv   70 (168)
T KOG1030|consen    3 MLVGLLRVRVKRGKNLAIRDFLGSSDPYVVLELGN------QKLKTRVVYK-NLNPEWNEELTFTVKDPN-----TPLKV   70 (168)
T ss_pred             ccceEEEEEEEeecCeeeeccccCCCCeEEEEECC------eeeeeeeecC-CCCCcccceEEEEecCCC-----ceEEE
Confidence            35688999999999999999879999999999997      7999998887 799999999999998765     59999


Q ss_pred             EEEecCCC-CCcceeEEEEeCccccccc
Q 021949           82 KIKSDGLL-GDKTVGEVIVPIKELLDSS  108 (305)
Q Consensus        82 ~V~d~~~~-~d~~IG~~~vpL~~l~~~~  108 (305)
                      +|||++.+ .|||||++.|+|..++...
T Consensus        71 ~VyD~D~fs~dD~mG~A~I~l~p~~~~~   98 (168)
T KOG1030|consen   71 TVYDKDTFSSDDFMGEATIPLKPLLEAQ   98 (168)
T ss_pred             EEEeCCCCCcccccceeeeccHHHHHHh
Confidence            99999999 8999999999999998643

>cd08381 C2B_PI3K_class_II C2 domain second repeat present in class II phosphatidylinositol 3-kinases (PI3Ks)

Probab=99.80  E-value=4.5e-19  Score=143.00  Aligned_cols=99  Identities=25%  Similarity=0.232  Sum_probs=83.6

Q ss_pred             cceEEEEEEEecCCCCCCCCCCCCcEEEEEEecCCCCCCceEEeEecCCCCCCCeeeceEEEEe-ccchhccCceEEEEE
Q 021949            4 YRALDLNLISAKHLKDVHLISKMDVYAVVSISGDHTIKKQKVKSHVDRSGGSNPTWNFPIKFTF-NQSLAQQNRLTLDFK   82 (305)
Q Consensus         4 ~~~L~V~vvsA~dL~~~~~~gk~dpYv~v~l~~~~~~~~~~~kT~v~k~~~~nP~Wne~f~f~v-~~~~~~~~~~~L~v~   82 (305)
                      .++|+|+|++|++|...+ .+.+||||+|++.++..+ ..++||+++++ +.||+|||+|.|.+ ....+  ....|+|+
T Consensus        12 ~~~L~V~Vi~A~~L~~~~-~~~~DpyVkv~l~~~~~~-~~~~kT~v~~~-~~nP~wnE~F~f~~~~~~~l--~~~~L~~~   86 (122)
T cd08381          12 NGTLFVMVMHAKNLPLLD-GSDPDPYVKTYLLPDPQK-TTKRKTKVVRK-TRNPTFNEMLVYDGLPVEDL--QQRVLQVS   86 (122)
T ss_pred             CCEEEEEEEEeeCCCCCC-CCCCCCEEEEEEeeCCcc-CCceeCCccCC-CCCCCcccEEEEecCChHHh--CCCEEEEE
Confidence            467999999999999888 889999999999865422 35889999988 79999999999997 43333  23589999


Q ss_pred             EEecCCC-CCcceeEEEEeCcccccc
Q 021949           83 IKSDGLL-GDKTVGEVIVPIKELLDS  107 (305)
Q Consensus        83 V~d~~~~-~d~~IG~~~vpL~~l~~~  107 (305)
                      |||++.+ ++++||++.|+|.++...
T Consensus        87 V~d~d~~~~~~~lG~~~i~l~~l~~~  112 (122)
T cd08381          87 VWSHDSLVENEFLGGVCIPLKKLDLS  112 (122)
T ss_pred             EEeCCCCcCCcEEEEEEEeccccccC
Confidence            9999988 789999999999999853

There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a N-terminal C2 domain, a PIK domain, and a kinase catalytic domain. Unlike class I and class III, class II PI3Ks have additionally a PX domain and a C-terminal C2 domain containing a nuclear localization signal both of which bind phospholipids though in a slightly different fashion. PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permut

>cd08395 C2C_Munc13 C2 domain third repeat in Munc13 (mammalian uncoordinated) proteins

Probab=99.80  E-value=7.8e-19  Score=141.05  Aligned_cols=110  Identities=15%  Similarity=0.274  Sum_probs=86.7

Q ss_pred             eEEEEEEEecCCCCCCCCCCCCcEEEEEEecCC-CCCCceEEeEecCCCCCCCeeeceEEEEeccchhccCceEEEEEEE
Q 021949            6 ALDLNLISAKHLKDVHLISKMDVYAVVSISGDH-TIKKQKVKSHVDRSGGSNPTWNFPIKFTFNQSLAQQNRLTLDFKIK   84 (305)
Q Consensus         6 ~L~V~vvsA~dL~~~~~~gk~dpYv~v~l~~~~-~~~~~~~kT~v~k~~~~nP~Wne~f~f~v~~~~~~~~~~~L~v~V~   84 (305)
                      +|+|+|++|++|+..+ .+++||||+|+|.+.. ....++++|+++++ +.||+|||+|.|.|.... ......|.|+||
T Consensus         1 kL~V~Vi~A~~L~~~d-~g~~DPYVkV~l~g~~~~~k~~k~kTkv~~~-tlnPvwNE~f~F~v~~~~-~~~~~~L~~~V~   77 (120)
T cd08395           1 KVTVKVVAANDLKWQT-TGMFRPFVEVNLIGPHLSDKKRKFATKSKNN-NWSPKYNETFQFILGNED-DPESYELHICVK   77 (120)
T ss_pred             CEEEEEEECcCCCccc-CCCCCCEEEEEEecCCCcccccEeeeEEecC-CCCCccCcEEEEEeeCcC-CCceeEEEEEEE
Confidence            5899999999999876 4899999999985311 11135678999866 899999999999997542 223468999999


Q ss_pred             ecCCC-CCcceeEEEEeCcccccccCCCCCCCCCcceEEEEEeec
Q 021949           85 SDGLL-GDKTVGEVIVPIKELLDSSSSSSSGDAKSMKFVTYQVRS  128 (305)
Q Consensus        85 d~~~~-~d~~IG~~~vpL~~l~~~~~~~~~~~g~~~~~~~~~l~~  128 (305)
                      |++.. .|++||++.|+|.++....          ....|+.|.+
T Consensus        78 D~d~~~~dd~IG~~~l~l~~~~~~~----------~~~~w~~L~~  112 (120)
T cd08395          78 DYCFARDDRLVGVTVLQLRDIAQAG----------SCACWLPLGR  112 (120)
T ss_pred             EecccCCCCEEEEEEEEHHHCcCCC----------cEEEEEECcC
Confidence            99876 6889999999999998543          2467888865

C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrevi

>cd04024 C2A_Synaptotagmin-like C2 domain first repeat present in Synaptotagmin-like proteins

Probab=99.80  E-value=8.8e-19  Score=141.71  Aligned_cols=121  Identities=21%  Similarity=0.371  Sum_probs=98.5

Q ss_pred             ceEEEEEEEecCCCCCCC--CCCCCcEEEEEEecCCCCCCceEEeEecCCCCCCCeeeceEEEEeccchhccCceEEEEE
Q 021949            5 RALDLNLISAKHLKDVHL--ISKMDVYAVVSISGDHTIKKQKVKSHVDRSGGSNPTWNFPIKFTFNQSLAQQNRLTLDFK   82 (305)
Q Consensus         5 ~~L~V~vvsA~dL~~~~~--~gk~dpYv~v~l~~~~~~~~~~~kT~v~k~~~~nP~Wne~f~f~v~~~~~~~~~~~L~v~   82 (305)
                      +.|+|+|++|++|...+.  ++.+||||+|.+..      .+.+|+++++ +.||.|||+|.|.+....    ...|.|+
T Consensus         1 g~l~v~v~~a~~L~~~~~~~~~~~dPyv~v~~~~------~~~kT~~~~~-t~~P~Wne~f~~~~~~~~----~~~l~i~   69 (128)
T cd04024           1 GVLRVHVVEAKDLAAKDRSGKGKSDPYAILSVGA------QRFKTQTIPN-TLNPKWNYWCEFPIFSAQ----NQLLKLI   69 (128)
T ss_pred             CEEEEEEEEeeCCCcccCCCCCCcCCeEEEEECC------EEEecceecC-CcCCccCCcEEEEecCCC----CCEEEEE
Confidence            579999999999998887  78999999999854      6789999887 899999999999997522    2589999


Q ss_pred             EEecCCC-CCcceeEEEEeCcccccccCCCCCCCCCcceEEEEEeecCC----CCCccEEEEEEEE
Q 021949           83 IKSDGLL-GDKTVGEVIVPIKELLDSSSSSSSGDAKSMKFVTYQVRSSS----GKPKGELHFSYKF  143 (305)
Q Consensus        83 V~d~~~~-~d~~IG~~~vpL~~l~~~~~~~~~~~g~~~~~~~~~l~~~~----g~~~G~l~lsl~~  143 (305)
                      |||++.+ .+++||++.|+|.++....    ..   .....||.|...+    .+..|+|+|++++
T Consensus        70 v~d~~~~~~~~~lG~~~i~l~~~~~~~----~~---~~~~~w~~L~~~~~~~~~~~~G~i~l~~~~  128 (128)
T cd04024          70 LWDKDRFAGKDYLGEFDIALEEVFADG----KT---GQSDKWITLKSTRPGKTSVVSGEIHLQFSW  128 (128)
T ss_pred             EEECCCCCCCCcceEEEEEHHHhhccc----cc---CccceeEEccCcccCccccccceEEEEEEC
Confidence            9999888 7899999999999997421    00   1235788887542    3479999999874

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permu

>cd08382 C2_Smurf-like C2 domain present in Smad ubiquitination-related factor (Smurf)-like proteins

Probab=99.80  E-value=9.2e-19  Score=141.29  Aligned_cols=116  Identities=18%  Similarity=0.304  Sum_probs=94.5

Q ss_pred             eEEEEEEEecCCCCCCCCCCCCcEEEEEEecCCCCCCceEEeEecCCCCCCCeeeceEEEEeccchhccCceEEEEEEEe
Q 021949            6 ALDLNLISAKHLKDVHLISKMDVYAVVSISGDHTIKKQKVKSHVDRSGGSNPTWNFPIKFTFNQSLAQQNRLTLDFKIKS   85 (305)
Q Consensus         6 ~L~V~vvsA~dL~~~~~~gk~dpYv~v~l~~~~~~~~~~~kT~v~k~~~~nP~Wne~f~f~v~~~~~~~~~~~L~v~V~d   85 (305)
                      +|+|+|++|++|...+.++++||||++++.+     ..+++|+++++ +.||.|||+|.|.+...      ..|.|+|||
T Consensus         1 ~l~v~v~~A~~L~~~~~~~~~dpyv~v~~~~-----~~~~kT~v~~~-t~nP~Wne~f~~~~~~~------~~l~i~V~d   68 (123)
T cd08382           1 KVRLTVLCADGLAKRDLFRLPDPFAVITVDG-----GQTHSTDVAKK-TLDPKWNEHFDLTVGPS------SIITIQVFD   68 (123)
T ss_pred             CeEEEEEEecCCCccCCCCCCCcEEEEEECC-----ccceEccEEcC-CCCCcccceEEEEeCCC------CEEEEEEEE
Confidence            4899999999999988889999999999964     26889999887 79999999999999652      489999999


Q ss_pred             cCCC-C--CcceeEEEEeCcccccccCCCCCCCCCcceEEEEEeecC----CCCCccEEEEEEE
Q 021949           86 DGLL-G--DKTVGEVIVPIKELLDSSSSSSSGDAKSMKFVTYQVRSS----SGKPKGELHFSYK  142 (305)
Q Consensus        86 ~~~~-~--d~~IG~~~vpL~~l~~~~~~~~~~~g~~~~~~~~~l~~~----~g~~~G~l~lsl~  142 (305)
                      ++.+ .  |++||++.++|.+++...    ..     ...||.|++.    .+...|+|.++++
T Consensus        69 ~~~~~~~~d~~lG~~~i~l~~l~~~~----~~-----~~~~~~l~~~~~~~~~~~~G~v~~~~~  123 (123)
T cd08382          69 QKKFKKKDQGFLGCVRIRANAVLPLK----DT-----GYQRLDLRKLKKSDNLSVRGKIVVSLS  123 (123)
T ss_pred             CCCCCCCCCceEeEEEEEHHHccccC----CC-----ccceeEeecCCCCCCceEeeEEEEEeC
Confidence            9877 2  579999999999998543    11     2347777653    3556888888763

A single C2 domain is found in Smurf proteins, C2-WW-HECT-domain E3s, which play an important role in the downregulation of the TGF-beta signaling pathway. Smurf proteins also regulate cell shape, motility, and polarity by degrading small guanosine triphosphatases (GTPases). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are

>cd04054 C2A_Rasal1_RasA4 C2 domain first repeat present in RasA1 and RasA4

Probab=99.80  E-value=1.4e-18  Score=139.91  Aligned_cols=117  Identities=15%  Similarity=0.279  Sum_probs=96.1

Q ss_pred             eEEEEEEEecCCCCCCCCCCCCcEEEEEEecCCCCCCceEEeEecCCCCCCCeeeceEEEEeccchhccCceEEEEEEEe
Q 021949            6 ALDLNLISAKHLKDVHLISKMDVYAVVSISGDHTIKKQKVKSHVDRSGGSNPTWNFPIKFTFNQSLAQQNRLTLDFKIKS   85 (305)
Q Consensus         6 ~L~V~vvsA~dL~~~~~~gk~dpYv~v~l~~~~~~~~~~~kT~v~k~~~~nP~Wne~f~f~v~~~~~~~~~~~L~v~V~d   85 (305)
                      .|.|+|++|++|.+.+.++++||||++.+.+     ..+.||+++++ +.||.|||+|.|.+....     ..|.|+|||
T Consensus         1 ~l~v~vi~a~~L~~~d~~g~~DPYv~v~~~~-----~~~~kT~v~~~-t~nP~Wne~f~~~~~~~~-----~~l~v~v~d   69 (121)
T cd04054           1 SLYIRIVEGKNLPAKDITGSSDPYCIVKVDN-----EVIIRTATVWK-TLNPFWGEEYTVHLPPGF-----HTVSFYVLD   69 (121)
T ss_pred             CEEEEEEEeeCCcCCCCCCCCCceEEEEECC-----EeeeeeeeEcC-CCCCcccceEEEeeCCCC-----CEEEEEEEE
Confidence            3899999999999999889999999999965     24579999888 799999999999986532     489999999


Q ss_pred             cCCC-CCcceeEEEEeCcccccccCCCCCCCCCcceEEEEEeec--CCCCCccEEEEEEE
Q 021949           86 DGLL-GDKTVGEVIVPIKELLDSSSSSSSGDAKSMKFVTYQVRS--SSGKPKGELHFSYK  142 (305)
Q Consensus        86 ~~~~-~d~~IG~~~vpL~~l~~~~~~~~~~~g~~~~~~~~~l~~--~~g~~~G~l~lsl~  142 (305)
                      ++.+ .|++||++.+.+.++....     .    ....|+.|+.  ..++..|+|+|+++
T Consensus        70 ~~~~~~d~~iG~~~~~~~~~~~~~-----~----~~~~W~~L~~~~~~~~~~G~i~l~~~  120 (121)
T cd04054          70 EDTLSRDDVIGKVSLTREVISAHP-----R----GIDGWMNLTEVDPDEEVQGEIHLELS  120 (121)
T ss_pred             CCCCCCCCEEEEEEEcHHHhccCC-----C----CCCcEEECeeeCCCCccccEEEEEEE
Confidence            9988 7899999999999887422     1    1245777754  45567899999876

Rasal1 and RasA4 are both members of GAP1 (GTPase activating protein 1). Rasal1 responds to repetitive Ca2+ signals by associating with the plasma membrane and deactivating Ras. RasA4 suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. Both of these proteins contains two C2 domains, a Ras-GAP domain, a plextrin homology (PH)-like domain, and a Bruton's Tyrosine Kinase (BTK) zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins.

>cd08391 C2A_C2C_Synaptotagmin_like C2 domain first and third repeat in Synaptotagmin-like proteins

Probab=99.79  E-value=1.3e-18  Score=139.28  Aligned_cols=115  Identities=19%  Similarity=0.294  Sum_probs=95.6

Q ss_pred             ceEEEEEEEecCCCCCCC------CCCCCcEEEEEEecCCCCCCceEEeEecCCCCCCCeeeceEEEEeccchhccCceE
Q 021949            5 RALDLNLISAKHLKDVHL------ISKMDVYAVVSISGDHTIKKQKVKSHVDRSGGSNPTWNFPIKFTFNQSLAQQNRLT   78 (305)
Q Consensus         5 ~~L~V~vvsA~dL~~~~~------~gk~dpYv~v~l~~~~~~~~~~~kT~v~k~~~~nP~Wne~f~f~v~~~~~~~~~~~   78 (305)
                      +.|+|+|++|++|...+.      .+.+||||++++.+      .+.+|+++++ +.||+|||+|.|.+....    ...
T Consensus         1 g~l~v~v~~a~~L~~~d~~~~~~~~g~~dPyv~v~~~~------~~~kT~~~~~-t~~P~W~e~f~~~v~~~~----~~~   69 (121)
T cd08391           1 GVLRIHVIEAQDLVAKDKFVGGLVKGKSDPYVIVRVGA------QTFKSKVIKE-NLNPKWNEVYEAVVDEVP----GQE   69 (121)
T ss_pred             CeEEEEEEEccCCcccccccccCCCCCcCCEEEEEECC------EeEEccccCC-CCCCcccceEEEEeCCCC----CCE
Confidence            579999999999998764      26799999999975      6889999887 899999999999986532    258


Q ss_pred             EEEEEEecCCCCCcceeEEEEeCcccccccCCCCCCCCCcceEEEEEeecCCCCCccEEEEEEEE
Q 021949           79 LDFKIKSDGLLGDKTVGEVIVPIKELLDSSSSSSSGDAKSMKFVTYQVRSSSGKPKGELHFSYKF  143 (305)
Q Consensus        79 L~v~V~d~~~~~d~~IG~~~vpL~~l~~~~~~~~~~~g~~~~~~~~~l~~~~g~~~G~l~lsl~~  143 (305)
                      |+|+|||++..+|++||++.++|.++....          ....||.|..   ..+|+|+|+++|
T Consensus        70 l~i~v~d~~~~~~~~iG~~~i~l~~l~~~~----------~~~~w~~L~~---~~~G~~~~~~~~  121 (121)
T cd08391          70 LEIELFDEDPDKDDFLGRLSIDLGSVEKKG----------FIDEWLPLED---VKSGRLHLKLEW  121 (121)
T ss_pred             EEEEEEecCCCCCCcEEEEEEEHHHhcccC----------ccceEEECcC---CCCceEEEEEeC
Confidence            999999998778899999999999998533          2367888864   367999999875

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular

>cd08677 C2A_Synaptotagmin-13 C2 domain

Probab=99.79  E-value=9.2e-19  Score=139.46  Aligned_cols=95  Identities=13%  Similarity=0.278  Sum_probs=81.4

Q ss_pred             ccceEEEEEEEecCCCCCCCCCCCCcEEEEEEecCCCCCCceEEeEecCCCCCCCeeeceEEEEeccchhccCceEEEEE
Q 021949            3 SYRALDLNLISAKHLKDVHLISKMDVYAVVSISGDHTIKKQKVKSHVDRSGGSNPTWNFPIKFTFNQSLAQQNRLTLDFK   82 (305)
Q Consensus         3 ~~~~L~V~vvsA~dL~~~~~~gk~dpYv~v~l~~~~~~~~~~~kT~v~k~~~~nP~Wne~f~f~v~~~~~~~~~~~L~v~   82 (305)
                      ..++|.|+|++|++|+   ..+.+||||++++..+..  ..+++|+|+++ +.||+|||+|.|.|....+.  +.+|.|.
T Consensus        12 ~~~~L~V~vikA~~L~---~~g~sDPYVKv~L~~~~k--~~k~kT~v~rk-tlnPvfnE~f~F~v~~~~l~--~~tL~~~   83 (118)
T cd08677          12 QKAELHVNILEAENIS---VDAGCECYISGCVSVSEG--QKEAQTALKKL-ALHTQWEEELVFPLPEEESL--DGTLTLT   83 (118)
T ss_pred             cCCEEEEEEEEecCCC---CCCCCCeEEEEEEcCCcC--ccEEEcceecC-CCCCccccEEEEeCCHHHhC--CcEEEEE
Confidence            3578999999999998   346799999999975322  36889999888 89999999999999877654  4689999


Q ss_pred             EEecCCC-CCcceeEEEEeCcccc
Q 021949           83 IKSDGLL-GDKTVGEVIVPIKELL  105 (305)
Q Consensus        83 V~d~~~~-~d~~IG~~~vpL~~l~  105 (305)
                      |||.+.+ ++++||++.++|+++.
T Consensus        84 V~d~Drfs~~d~IG~v~l~l~~~~  107 (118)
T cd08677          84 LRCCDRFSRHSTLGELRLKLADVS  107 (118)
T ss_pred             EEeCCCCCCCceEEEEEEcccccc
Confidence            9999998 8999999999999874

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 13, a member of class 6 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmins 8 and 12, does not have any consensus Ca2+ binding sites. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domain

>cd04010 C2B_RasA3 C2 domain second repeat present in RAS p21 protein activator 3 (RasA3)

Probab=99.79  E-value=1.5e-18  Score=144.46  Aligned_cols=111  Identities=20%  Similarity=0.305  Sum_probs=86.6

Q ss_pred             eEEEEEEEecCCCCCCCCCCCCcEEEEEEecCCCCCCceEEeEecCCCCCCCeeeceEEEEeccc-----------hhcc
Q 021949            6 ALDLNLISAKHLKDVHLISKMDVYAVVSISGDHTIKKQKVKSHVDRSGGSNPTWNFPIKFTFNQS-----------LAQQ   74 (305)
Q Consensus         6 ~L~V~vvsA~dL~~~~~~gk~dpYv~v~l~~~~~~~~~~~kT~v~k~~~~nP~Wne~f~f~v~~~-----------~~~~   74 (305)
                      +|.|+|++|++|..  ..+..||||+|.+.+...+ ..+++|+++++ +.||+|||+|.|.+...           ..+.
T Consensus         1 kL~V~Vi~ArnL~~--~~g~sDPYV~V~l~~~~~k-~~~~kT~v~~~-t~nP~wNE~F~F~v~~~~~~~~~~~~~~~~~~   76 (148)
T cd04010           1 KLSVRVIECSDLAL--KNGTCDPYASVTLIYSNKK-QDTKRTKVKKK-TNNPQFDEAFYFDVTIDSSPEKKQFEMPEEDA   76 (148)
T ss_pred             CEEEEEEeCcCCCC--CCCCCCceEEEEEeCCccc-CcccCCccEeC-CCCCccceEEEEEEecccccccccccCCcccc
Confidence            48999999999987  4588999999999864321 35788999887 89999999999999521           1111


Q ss_pred             CceEEEEEEEecCCC-CCcceeEEEEeCcccccccCCCCCCCCCcceEEEEEeecC
Q 021949           75 NRLTLDFKIKSDGLL-GDKTVGEVIVPIKELLDSSSSSSSGDAKSMKFVTYQVRSS  129 (305)
Q Consensus        75 ~~~~L~v~V~d~~~~-~d~~IG~~~vpL~~l~~~~~~~~~~~g~~~~~~~~~l~~~  129 (305)
                      ....|.|+|||++.+ +|+|||++.|+|.++....     .    ....||.|...
T Consensus        77 ~~~~L~i~V~d~~~~~~ddfLG~v~i~l~~l~~~~-----~----~~~~W~~L~~~  123 (148)
T cd04010          77 EKLELRVDLWHASMGGGDVFLGEVRIPLRGLDLQA-----G----SHQAWYFLQPR  123 (148)
T ss_pred             cEEEEEEEEEcCCCCCCCceeEEEEEecccccccC-----C----cCcceeecCCc
Confidence            235899999999887 8899999999999988531     1    23668888764

RasA3 are members of GTPase activating protein 1 (GAP1), a Ras-specific GAP, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. RasA3 contains an N-terminal C2 domain, a Ras-GAP domain, a plextrin homology (PH)-like domain, and a Bruton's Tyrosine Kinase (BTK) zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain

>cd08373 C2A_Ferlin C2 domain first repeat in Ferlin

Probab=99.79  E-value=3.8e-18  Score=138.24  Aligned_cols=118  Identities=23%  Similarity=0.363  Sum_probs=98.2

Q ss_pred             EEEecCCCCCCCCCCCCcEEEEEEecCCCCCCceEEeEecCCCCCCCeeeceEEEEeccchhccCceEEEEEEEecCCC-
Q 021949           11 LISAKHLKDVHLISKMDVYAVVSISGDHTIKKQKVKSHVDRSGGSNPTWNFPIKFTFNQSLAQQNRLTLDFKIKSDGLL-   89 (305)
Q Consensus        11 vvsA~dL~~~~~~gk~dpYv~v~l~~~~~~~~~~~kT~v~k~~~~nP~Wne~f~f~v~~~~~~~~~~~L~v~V~d~~~~-   89 (305)
                      |++|++|.+  .+++.||||+|++.+      .+.+|+++++ +.||+|||+|.|.+....  .....|.|+|||++.+ 
T Consensus         2 vi~a~~L~~--~~g~~Dpyv~v~~~~------~~~kT~v~~~-~~nP~Wne~f~f~~~~~~--~~~~~l~~~v~d~~~~~   70 (127)
T cd08373           2 VVSLKNLPG--LKGKGDRIAKVTFRG------VKKKTRVLEN-ELNPVWNETFEWPLAGSP--DPDESLEIVVKDYEKVG   70 (127)
T ss_pred             eEEeeCCcc--cCCCCCCEEEEEECC------EeeecceeCC-CcCCcccceEEEEeCCCc--CCCCEEEEEEEECCCCC
Confidence            789999998  678999999999965      5789999988 799999999999996542  1235899999999887 


Q ss_pred             CCcceeEEEEeCcccccccCCCCCCCCCcceEEEEEeecCCCC-CccEEEEEEEEeccCCC
Q 021949           90 GDKTVGEVIVPIKELLDSSSSSSSGDAKSMKFVTYQVRSSSGK-PKGELHFSYKFSEPTVG  149 (305)
Q Consensus        90 ~d~~IG~~~vpL~~l~~~~~~~~~~~g~~~~~~~~~l~~~~g~-~~G~l~lsl~~~~~~~~  149 (305)
                      .|++||++.++|.++....          ....|+.|.+.+++ .+|+|+|+++|.+...+
T Consensus        71 ~d~~iG~~~~~l~~l~~~~----------~~~~~~~L~~~~~~~~~~~l~l~~~~~~~~~~  121 (127)
T cd08373          71 RNRLIGSATVSLQDLVSEG----------LLEVTEPLLDSNGRPTGATISLEVSYQPPDGA  121 (127)
T ss_pred             CCceEEEEEEEhhHcccCC----------ceEEEEeCcCCCCCcccEEEEEEEEEeCCCCc
Confidence            7899999999999998533          24778999876555 58999999999987653

Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen

>cd08392 C2A_SLP-3 C2 domain first repeat present in Synaptotagmin-like protein 3

Probab=99.78  E-value=2.3e-18  Score=140.01  Aligned_cols=113  Identities=20%  Similarity=0.322  Sum_probs=91.3

Q ss_pred             ccceEEEEEEEecCCCCCCCC-CCCCcEEEEEEecCCCCCCceEEeEecCCCCCCCeeeceEEEEeccchhccCceEEEE
Q 021949            3 SYRALDLNLISAKHLKDVHLI-SKMDVYAVVSISGDHTIKKQKVKSHVDRSGGSNPTWNFPIKFTFNQSLAQQNRLTLDF   81 (305)
Q Consensus         3 ~~~~L~V~vvsA~dL~~~~~~-gk~dpYv~v~l~~~~~~~~~~~kT~v~k~~~~nP~Wne~f~f~v~~~~~~~~~~~L~v   81 (305)
                      ..++|.|+|++|++|...+.. +..||||++++..+..+ ..++||+++++ +.||+|||+|.|.|....+  ....|.|
T Consensus        13 ~~~~L~V~V~~a~nL~~~d~~~g~~dpYVkv~llp~~~~-~~k~kT~v~~~-t~nPvfNE~F~f~v~~~~l--~~~~L~v   88 (128)
T cd08392          13 RTSCLEITIKACRNLAYGDEKKKKCHPYVKVCLLPDKSH-NSKRKTAVKKG-TVNPVFNETLKYVVEADLL--SSRQLQV   88 (128)
T ss_pred             CCCEEEEEEEecCCCCccCCCCCCCCeEEEEEEEeCCcc-cceeecccccC-CCCCccceEEEEEcCHHHh--CCcEEEE
Confidence            357899999999999988764 88999999999865432 35789999887 8999999999999876544  3368999


Q ss_pred             EEEecCCC-CCcceeEEEEeCcccccccCCCCCCCCCcceEEEEEe
Q 021949           82 KIKSDGLL-GDKTVGEVIVPIKELLDSSSSSSSGDAKSMKFVTYQV  126 (305)
Q Consensus        82 ~V~d~~~~-~d~~IG~~~vpL~~l~~~~~~~~~~~g~~~~~~~~~l  126 (305)
                      .|||.+.+ ++++||++.|+|.++....    ..   +....||.|
T Consensus        89 ~V~~~~~~~~~~~lG~~~i~L~~~~~~~----~~---~~~~~W~~l  127 (128)
T cd08392          89 SVWHSRTLKRRVFLGEVLIPLADWDFED----TD---SQRFLWYPL  127 (128)
T ss_pred             EEEeCCCCcCcceEEEEEEEcCCcccCC----CC---ccccceEEC
Confidence            99999887 7899999999999996432    11   234678876

All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. SHD of Slp (except for the Slp4-SHD) function as a specific Rab27A/B-binding domain. In addition to Slp, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. Little is known about the expression or localization of Slp3. The C2A domain of Slp3 is Ca2+ dependent. It has been demonstrated that Slp3 promotes dense-core vesicle exocytosis. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids

>cd08393 C2A_SLP-1_2 C2 domain first repeat present in Synaptotagmin-like proteins 1 and 2

Probab=99.78  E-value=2.1e-18  Score=139.59  Aligned_cols=100  Identities=19%  Similarity=0.267  Sum_probs=84.2

Q ss_pred             ccceEEEEEEEecCCCCCCCC-CCCCcEEEEEEecCCCCCCceEEeEecCCCCCCCeeeceEEEEeccchhccCceEEEE
Q 021949            3 SYRALDLNLISAKHLKDVHLI-SKMDVYAVVSISGDHTIKKQKVKSHVDRSGGSNPTWNFPIKFTFNQSLAQQNRLTLDF   81 (305)
Q Consensus         3 ~~~~L~V~vvsA~dL~~~~~~-gk~dpYv~v~l~~~~~~~~~~~kT~v~k~~~~nP~Wne~f~f~v~~~~~~~~~~~L~v   81 (305)
                      ..+.|+|+|++|+||...+.. +.+||||++++..+..+ ..+.||+++++ +.||+|||+|.|.+....+  ....|.|
T Consensus        13 ~~~~L~V~vi~a~~L~~~d~~~g~~dpyVkv~l~p~~~~-~~~~kT~v~~~-t~nP~~nE~f~f~v~~~~l--~~~~L~~   88 (125)
T cd08393          13 KLRELHVHVIQCQDLAAADPKKQRSDPYVKTYLLPDKSN-RGKRKTSVKKK-TLNPVFNETLRYKVEREEL--PTRVLNL   88 (125)
T ss_pred             CCCEEEEEEEEeCCCCCcCCCCCCCCcEEEEEEEcCCCc-cccccCccCcC-CCCCccCceEEEECCHHHh--CCCEEEE
Confidence            346899999999999988865 78999999999765422 35679999988 7999999999999876544  3358999


Q ss_pred             EEEecCCC-CCcceeEEEEeCccccc
Q 021949           82 KIKSDGLL-GDKTVGEVIVPIKELLD  106 (305)
Q Consensus        82 ~V~d~~~~-~d~~IG~~~vpL~~l~~  106 (305)
                      +|||.+.+ ++++||++.|+|.++..
T Consensus        89 ~V~d~~~~~~~~~iG~~~i~L~~~~~  114 (125)
T cd08393          89 SVWHRDSLGRNSFLGEVEVDLGSWDW  114 (125)
T ss_pred             EEEeCCCCCCCcEeEEEEEecCcccc
Confidence            99999887 78999999999999964

All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. Slp1/JFC1 and Slp2/exophilin 4 promote granule docking to the plasma membrane. Additionally, their C2A domains are both Ca2+ independent, unlike Slp3 and Slp4/granuphilin which are Ca2+ dependent. It is thought that SHD (except for the Slp4-SHD) functions as a specific Rab27A/B-binding domain. In addition to Slps, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety

>cd04014 C2_PKC_epsilon C2 domain in Protein Kinase C (PKC) epsilon

Probab=99.78  E-value=6.1e-18  Score=137.99  Aligned_cols=117  Identities=16%  Similarity=0.317  Sum_probs=95.6

Q ss_pred             cceEEEEEEEecCCCCCCCC----------CCCCcEEEEEEecCCCCCCceEEeEecCCCCCCCeeeceEEEEeccchhc
Q 021949            4 YRALDLNLISAKHLKDVHLI----------SKMDVYAVVSISGDHTIKKQKVKSHVDRSGGSNPTWNFPIKFTFNQSLAQ   73 (305)
Q Consensus         4 ~~~L~V~vvsA~dL~~~~~~----------gk~dpYv~v~l~~~~~~~~~~~kT~v~k~~~~nP~Wne~f~f~v~~~~~~   73 (305)
                      .+.|+|+|++|++|+..+..          +.+||||++++.+     .+..+|+++++ +.||.|||+|.|.+...   
T Consensus         3 ~g~l~V~v~~a~~L~~~d~~~~~~~~~~~~g~~dpyv~v~~~~-----~~~~kT~~~~~-t~~P~Wne~f~~~v~~~---   73 (132)
T cd04014           3 TGTLKIKICEAVDLKPTDWSTRHAVPKKGSQLLDPYVSIDVDD-----THIGKTSTKPK-TNSPVWNEEFTTEVHNG---   73 (132)
T ss_pred             ceEEEEEEEEecCCCCCCchhhhcccccCccCcCcEEEEEECC-----EEEeEEeEcCC-CCCCCcceeEEEEcCCC---
Confidence            57899999999999887752          5789999999975     24578998777 89999999999999632   


Q ss_pred             cCceEEEEEEEecCCC-CCcceeEEEEeCcccccccCCCCCCCCCcceEEEEEeecCCCCCccEEEEEEEEec
Q 021949           74 QNRLTLDFKIKSDGLL-GDKTVGEVIVPIKELLDSSSSSSSGDAKSMKFVTYQVRSSSGKPKGELHFSYKFSE  145 (305)
Q Consensus        74 ~~~~~L~v~V~d~~~~-~d~~IG~~~vpL~~l~~~~~~~~~~~g~~~~~~~~~l~~~~g~~~G~l~lsl~~~~  145 (305)
                         ..|.|+|||++.+ .+++||++.|+|.++....     +   .....|+.|.     +.|+|+|++++..
T Consensus        74 ---~~l~~~v~d~~~~~~~~~iG~~~i~l~~l~~~~-----~---~~~~~w~~L~-----~~G~l~l~~~~~~  130 (132)
T cd04014          74 ---RNLELTVFHDAAIGPDDFVANCTISFEDLIQRG-----S---GSFDLWVDLE-----PQGKLHVKIELKG  130 (132)
T ss_pred             ---CEEEEEEEeCCCCCCCceEEEEEEEhHHhcccC-----C---CcccEEEEcc-----CCcEEEEEEEEec
Confidence               4899999998877 7899999999999998531     1   1246788885     5799999999864

A single C2 domain is found in PKC epsilon. The PKC family of serine/threonine kinases regulates apoptosis, proliferation, migration, motility, chemo-resistance, and differentiation. There are 3 groups: group 1 (alpha, betaI, beta II, gamma) which require phospholipids and calcium, group 2 (delta, epsilon, theta, eta) which do not require calcium for activation, and group 3 (xi, iota/lambda) which are atypical and can be activated in the absence of diacylglycerol and calcium. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that

>cd04028 C2B_RIM1alpha C2 domain second repeat contained in Rab3-interacting molecule (RIM) proteins

Probab=99.78  E-value=5.2e-18  Score=140.64  Aligned_cols=109  Identities=17%  Similarity=0.179  Sum_probs=88.0

Q ss_pred             cceEEEEEEEecCCCCCC-CCCCCCcEEEEEEecCCCCCCceEEeEecCCCCCCCeeeceEEEEeccchhccCceEEEEE
Q 021949            4 YRALDLNLISAKHLKDVH-LISKMDVYAVVSISGDHTIKKQKVKSHVDRSGGSNPTWNFPIKFTFNQSLAQQNRLTLDFK   82 (305)
Q Consensus         4 ~~~L~V~vvsA~dL~~~~-~~gk~dpYv~v~l~~~~~~~~~~~kT~v~k~~~~nP~Wne~f~f~v~~~~~~~~~~~L~v~   82 (305)
                      .+.|+|+|++|++|...+ ..+..||||++++..+..+ ..+.||+++++ +.||+|||+|.|.+..     .+..|.|+
T Consensus        28 ~~~L~V~Vi~ArnL~~~~~~~g~sDPYVKv~Llp~~~~-~~k~KT~v~kk-tlnPvfNE~F~f~v~l-----~~~~L~v~  100 (146)
T cd04028          28 KGQLEVEVIRARGLVQKPGSKVLPAPYVKVYLLEGKKC-IAKKKTKIARK-TLDPLYQQQLVFDVSP-----TGKTLQVI  100 (146)
T ss_pred             CCEEEEEEEEeeCCCcccCCCCCcCCeEEEEEECCCcc-ccceeceecCC-CCCCccCCeEEEEEcC-----CCCEEEEE
Confidence            468999999999998754 4578999999999865422 35889999987 8999999999999972     23689999


Q ss_pred             EE-ecCCC-CCcceeEEEEeCcccccccCCCCCCCCCcceEEEEEeecC
Q 021949           83 IK-SDGLL-GDKTVGEVIVPIKELLDSSSSSSSGDAKSMKFVTYQVRSS  129 (305)
Q Consensus        83 V~-d~~~~-~d~~IG~~~vpL~~l~~~~~~~~~~~g~~~~~~~~~l~~~  129 (305)
                      || |++.+ ++++||++.|+|+++....          ....||.|...
T Consensus       101 V~~d~~~~~~~~~iG~~~i~L~~l~~~~----------~~~~Wy~L~~~  139 (146)
T cd04028         101 VWGDYGRMDKKVFMGVAQILLDDLDLSN----------LVIGWYKLFPT  139 (146)
T ss_pred             EEeCCCCCCCCceEEEEEEEcccccCCC----------CceeEEecCCc
Confidence            99 56666 7899999999999985322          23679999864

RIMs are believed to organize specialized sites of the plasma membrane called active zones. They also play a role in controlling neurotransmitter release, plasticity processes, as well as memory and learning. RIM contains an N-terminal zinc finger domain, a PDZ domain, and two C-terminal C2 domains (C2A, C2B). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as

>cd08680 C2_Kibra C2 domain found in Human protein Kibra

Probab=99.77  E-value=2.3e-18  Score=139.15  Aligned_cols=101  Identities=12%  Similarity=0.179  Sum_probs=86.2

Q ss_pred             ccceEEEEEEEecCCCCCCCCCCCCcEEEEEEecCCCCCCceEEeEecCCCCCCCeeeceEEEEeccchhccCceEEEEE
Q 021949            3 SYRALDLNLISAKHLKDVHLISKMDVYAVVSISGDHTIKKQKVKSHVDRSGGSNPTWNFPIKFTFNQSLAQQNRLTLDFK   82 (305)
Q Consensus         3 ~~~~L~V~vvsA~dL~~~~~~gk~dpYv~v~l~~~~~~~~~~~kT~v~k~~~~nP~Wne~f~f~v~~~~~~~~~~~L~v~   82 (305)
                      ..+.|+|+|++|+||...+..+..||||++++..+..+...++||+++++ +.||+|||+|.|.|....+.  ...|.|.
T Consensus        12 ~~~~L~V~V~~arnL~~~~~~~~~dpyVKv~Llp~~~~~~~~~kT~v~~~-t~nPvfnE~F~f~v~~~~L~--~~~L~~~   88 (124)
T cd08680          12 GDSSLVISVEQLRNLSALSIPENSKVYVRVALLPCSSSTSCLFRTKALED-QDKPVFNEVFRVPISSTKLY--QKTLQVD   88 (124)
T ss_pred             CCCEEEEEEeEecCCcccccCCCCCeEEEEEEccCCCCCCceEEcCccCC-CCCCccccEEEEECCHHHhh--cCEEEEE
Confidence            35789999999999998876778999999999876543235889999888 89999999999999776653  3699999


Q ss_pred             EEecCCC-CCcceeEEEEeCccccc
Q 021949           83 IKSDGLL-GDKTVGEVIVPIKELLD  106 (305)
Q Consensus        83 V~d~~~~-~d~~IG~~~vpL~~l~~  106 (305)
                      ||+.+.+ ++++||++.|+|.++..
T Consensus        89 V~~~~~~~~~~~lG~~~i~L~~~~~  113 (124)
T cd08680          89 VCSVGPDQQEECLGGAQISLADFES  113 (124)
T ss_pred             EEeCCCCCceeEEEEEEEEhhhccC
Confidence            9999877 78999999999999954

Kibra is thought to be a regulator of the Salvador (Sav)/Warts (Wts)/Hippo (Hpo) (SWH) signaling network, which limits tissue growth by inhibiting cell proliferation and promoting apoptosis. The core of the pathway consists of a MST and LATS family kinase cascade that ultimately phosphorylates and inactivates the YAP/Yorkie (Yki) transcription coactivator. The FERM domain proteins Merlin (Mer) and Expanded (Ex) are part of the upstream regulation controlling pathway mechanism. Kibra colocalizes and associates with Mer and Ex and is thought to transduce an extracellular signal via the SWH network. The apical scaffold machinery that contains Hpo, Wts, and Ex recruits Yki to the apical membrane facilitating its inhibitory phosphorlyation by Wts. Since Kibra associates with Ex and is apically located it is hypothesized that KIBRA is part of the scaffold, helps in the Hpo/Wts complex, and helps recruit Yki for inactivation that prom

>cd04049 C2_putative_Elicitor-responsive_gene C2 domain present in the putative elicitor-responsive gene

Probab=99.77  E-value=4.6e-18  Score=137.15  Aligned_cols=97  Identities=31%  Similarity=0.497  Sum_probs=82.9

Q ss_pred             ceEEEEEEEecCCCCCCCCCCCCcEEEEEEecCCCCCCceEEeEecCCCCCCCeeeceEEEEeccchhccCceEEEEEEE
Q 021949            5 RALDLNLISAKHLKDVHLISKMDVYAVVSISGDHTIKKQKVKSHVDRSGGSNPTWNFPIKFTFNQSLAQQNRLTLDFKIK   84 (305)
Q Consensus         5 ~~L~V~vvsA~dL~~~~~~gk~dpYv~v~l~~~~~~~~~~~kT~v~k~~~~nP~Wne~f~f~v~~~~~~~~~~~L~v~V~   84 (305)
                      ++|+|+|++|++|++.+.++++||||+|++..      .+++|+++++++.||+|||+|.|.+..... .....|.|+||
T Consensus         1 g~L~V~V~~A~~L~~~~~~~~~dpyv~v~~~~------~~~~T~~~~~~t~nP~Wne~f~f~v~~~~~-~~~~~l~v~V~   73 (124)
T cd04049           1 GTLEVLLISAKGLQDTDFLGKIDPYVIIQCRT------QERKSKVAKGDGRNPEWNEKFKFTVEYPGW-GGDTKLILRIM   73 (124)
T ss_pred             CeEEEEEEecCCCCCCCCCCCcCceEEEEECC------EeeeeeEcCCCCCCCcccceEEEEecCccc-CCCCEEEEEEE
Confidence            57999999999999988889999999999965      577888887668999999999999977532 11258999999


Q ss_pred             ecCCC-CCcceeEEEEeCccccccc
Q 021949           85 SDGLL-GDKTVGEVIVPIKELLDSS  108 (305)
Q Consensus        85 d~~~~-~d~~IG~~~vpL~~l~~~~  108 (305)
                      |++.+ +|++||++.|+|.+++...
T Consensus        74 d~~~~~~d~~iG~~~i~l~~l~~~~   98 (124)
T cd04049          74 DKDNFSDDDFIGEATIHLKGLFEEG   98 (124)
T ss_pred             ECccCCCCCeEEEEEEEhHHhhhCC
Confidence            99887 7899999999999998644

In plants elicitor-responsive proteins are triggered in response to specific elicitor molecules such as glycolproteins, peptides, carbohydrates and lipids. A host of defensive responses are also triggered resulting in localized cell death. Antimicrobial secondary metabolites, such as phytoalexins, or defense-related proteins, including pathogenesis-related (PR) proteins are also produced. There is a single C2 domain present here. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contai

>cd04029 C2A_SLP-4_5 C2 domain first repeat present in Synaptotagmin-like proteins 4 and 5

Probab=99.77  E-value=5.8e-18  Score=137.11  Aligned_cols=102  Identities=19%  Similarity=0.294  Sum_probs=84.0

Q ss_pred             ccceEEEEEEEecCCCCCCC-CCCCCcEEEEEEecCCCCCCceEEeEecCCCCCCCeeeceEEEEeccchhccCceEEEE
Q 021949            3 SYRALDLNLISAKHLKDVHL-ISKMDVYAVVSISGDHTIKKQKVKSHVDRSGGSNPTWNFPIKFTFNQSLAQQNRLTLDF   81 (305)
Q Consensus         3 ~~~~L~V~vvsA~dL~~~~~-~gk~dpYv~v~l~~~~~~~~~~~kT~v~k~~~~nP~Wne~f~f~v~~~~~~~~~~~L~v   81 (305)
                      ..++|.|+|++|++|...+. .+.+||||+|++..+..+ ..++||+++++ +.||+|||+|.|.|....+  .+..|.|
T Consensus        13 ~~~~L~V~Vi~a~~L~~~~~~~~~~DpyVkv~l~p~~~~-~~~~kT~v~~~-t~nP~wnE~f~f~i~~~~l--~~~~L~~   88 (125)
T cd04029          13 KTQSLNVHVKECRNLAYGDEAKKRSNPYVKTYLLPDKSR-QSKRKTSIKRN-TTNPVYNETLKYSISHSQL--ETRTLQL   88 (125)
T ss_pred             CCCeEEEEEEEecCCCccCCCCCCCCcEEEEEEEcCCcc-ccceEeeeeeC-CCCCcccceEEEECCHHHh--CCCEEEE
Confidence            45789999999999987654 478999999999754321 35789999887 8999999999999976544  2358999


Q ss_pred             EEEecCCC-CCcceeEEEEeCccccccc
Q 021949           82 KIKSDGLL-GDKTVGEVIVPIKELLDSS  108 (305)
Q Consensus        82 ~V~d~~~~-~d~~IG~~~vpL~~l~~~~  108 (305)
                      +|||++.+ ++++||++.|+|.++....
T Consensus        89 ~V~d~~~~~~~~~lG~~~i~l~~~~~~~  116 (125)
T cd04029          89 SVWHYDRFGRNTFLGEVEIPLDSWNFDS  116 (125)
T ss_pred             EEEECCCCCCCcEEEEEEEeCCcccccC
Confidence            99999887 7889999999999997533

All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. SHD of Slp (except for the Slp4-SHD) function as a specific Rab27A/B-binding domain. In addition to Slp, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. It has been demonstrated that Slp4/granuphilin promotes dense-core vesicle exocytosis. The C2A domain of Slp4 is Ca2+ dependent. Slp5 mRNA has been shown to be restricted to human placenta and liver suggesting a role in Rab27A-dependent membrane trafficking in specific tissues. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2

>cd04039 C2_PSD C2 domain present in Phosphatidylserine decarboxylase (PSD)

Probab=99.76  E-value=6.3e-18  Score=133.45  Aligned_cols=94  Identities=17%  Similarity=0.293  Sum_probs=80.1

Q ss_pred             ceEEEEEEEecCCCCCCCC----CCCCcEEEEEEecCCCCCCceEEeEecCCCCCCCeeeceEEEEeccchhccCceEEE
Q 021949            5 RALDLNLISAKHLKDVHLI----SKMDVYAVVSISGDHTIKKQKVKSHVDRSGGSNPTWNFPIKFTFNQSLAQQNRLTLD   80 (305)
Q Consensus         5 ~~L~V~vvsA~dL~~~~~~----gk~dpYv~v~l~~~~~~~~~~~kT~v~k~~~~nP~Wne~f~f~v~~~~~~~~~~~L~   80 (305)
                      +.|.|+|++|++|+..+..    +.+||||+|++..      +++||+++++ +.||+|||+|.|.+.....   ...|.
T Consensus         1 g~l~v~v~~A~~L~~~~~~~~~~~~~DPYv~v~~~~------~~~kT~v~~~-t~nPvWne~f~f~v~~~~~---~~~L~   70 (108)
T cd04039           1 GVVFMEIKSITDLPPLKNMTRTGFDMDPFVIISFGR------RVFRTSWRRH-TLNPVFNERLAFEVYPHEK---NFDIQ   70 (108)
T ss_pred             CEEEEEEEeeeCCCCccccCCCCCccCceEEEEECC------EeEeeeeecC-CCCCcccceEEEEEeCccC---CCEEE
Confidence            5799999999999987643    3489999999954      6789999988 7999999999999865432   25899


Q ss_pred             EEEEecCCC-CCcceeEEEEeCccccccc
Q 021949           81 FKIKSDGLL-GDKTVGEVIVPIKELLDSS  108 (305)
Q Consensus        81 v~V~d~~~~-~d~~IG~~~vpL~~l~~~~  108 (305)
                      |+|||++.+ +|++||++.++|.+|+...
T Consensus        71 ~~V~D~d~~~~dd~IG~~~l~L~~l~~~~   99 (108)
T cd04039          71 FKVLDKDKFSFNDYVATGSLSVQELLNAA   99 (108)
T ss_pred             EEEEECCCCCCCcceEEEEEEHHHHHhhC
Confidence            999999988 8999999999999998654

PSD is involved in the biosynthesis of aminophospholipid by converting phosphatidylserine (PtdSer) to phosphatidylethanolamine (PtdEtn). There is a single C2 domain present and it is thought to confer PtdSer binding motif that is common to PKC and synaptotagmin. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM

>cd04040 C2D_Tricalbin-like C2 domain fourth repeat present in Tricalbin-like proteins

Probab=99.76  E-value=9.1e-18  Score=133.39  Aligned_cols=113  Identities=19%  Similarity=0.305  Sum_probs=95.4

Q ss_pred             EEEEEEEecCCCCCCCCCCCCcEEEEEEecCCCCCCceEEeEecCCCCCCCeeeceEEEEeccchhccCceEEEEEEEec
Q 021949            7 LDLNLISAKHLKDVHLISKMDVYAVVSISGDHTIKKQKVKSHVDRSGGSNPTWNFPIKFTFNQSLAQQNRLTLDFKIKSD   86 (305)
Q Consensus         7 L~V~vvsA~dL~~~~~~gk~dpYv~v~l~~~~~~~~~~~kT~v~k~~~~nP~Wne~f~f~v~~~~~~~~~~~L~v~V~d~   86 (305)
                      |+|+|++|++|...+..+++||||+|.+.+     ....+|+++++ +.+|+|||+|.|.+....    ...|.|+|||+
T Consensus         1 l~v~vi~a~~L~~~~~~~~~dpyv~v~~~~-----~~~~~T~v~~~-~~~P~Wne~f~~~~~~~~----~~~l~~~v~d~   70 (115)
T cd04040           1 LTVDVISAENLPSADRNGKSDPFVKFYLNG-----EKVFKTKTIKK-TLNPVWNESFEVPVPSRV----RAVLKVEVYDW   70 (115)
T ss_pred             CEEEEEeeeCCCCCCCCCCCCCeEEEEECC-----CcceeeceecC-CCCCcccccEEEEeccCC----CCEEEEEEEeC
Confidence            689999999999988888999999999965     25689999877 899999999999987542    25899999999


Q ss_pred             CCC-CCcceeEEEEeCcccccccCCCCCCCCCcceEEEEEeecCCCCCccEEEE
Q 021949           87 GLL-GDKTVGEVIVPIKELLDSSSSSSSGDAKSMKFVTYQVRSSSGKPKGELHF  139 (305)
Q Consensus        87 ~~~-~d~~IG~~~vpL~~l~~~~~~~~~~~g~~~~~~~~~l~~~~g~~~G~l~l  139 (305)
                      +.. .+++||++.++|.++....          ....|+.|...++...|+|.+
T Consensus        71 ~~~~~~~~iG~~~~~l~~l~~~~----------~~~~~~~L~~~g~~~~~~~~~  114 (115)
T cd04040          71 DRGGKDDLLGSAYIDLSDLEPEE----------TTELTLPLDGQGGGKLGAVFL  114 (115)
T ss_pred             CCCCCCCceEEEEEEHHHcCCCC----------cEEEEEECcCCCCccCceEEc
Confidence            887 7899999999999987533          357889998777778888764

5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain.

>cd08685 C2_RGS-like C2 domain of the Regulator Of G-Protein Signaling (RGS) family

Probab=99.76  E-value=5.1e-18  Score=136.29  Aligned_cols=98  Identities=19%  Similarity=0.282  Sum_probs=82.0

Q ss_pred             ccceEEEEEEEecCCCCCCCCCCCCcEEEEEEecCCCCCCceEEeEecCCCCCCCeeeceEEEEeccchhccCceEEEEE
Q 021949            3 SYRALDLNLISAKHLKDVHLISKMDVYAVVSISGDHTIKKQKVKSHVDRSGGSNPTWNFPIKFTFNQSLAQQNRLTLDFK   82 (305)
Q Consensus         3 ~~~~L~V~vvsA~dL~~~~~~gk~dpYv~v~l~~~~~~~~~~~kT~v~k~~~~nP~Wne~f~f~v~~~~~~~~~~~L~v~   82 (305)
                      ..++|+|+|++|++|...+ .+..||||++++..+..+ ..+.||+++++ +.||+|||+|.|.+......   ..|.|+
T Consensus        10 ~~~~L~V~Vi~ar~L~~~~-~g~~dpYVkv~l~p~~~~-~~~~kT~v~~~-t~~P~~nE~F~f~v~~~~~~---~~l~v~   83 (119)
T cd08685          10 QNRKLTLHVLEAKGLRSTN-SGTCNSYVKISLSPDKEV-RFRQKTSTVPD-SANPLFHETFSFDVNERDYQ---KRLLVT   83 (119)
T ss_pred             cCCEEEEEEEEEECCCCCC-CCCCCeeEEEEEEeCCCC-cceEeCccccC-CCCCccccEEEEEcChHHhC---CEEEEE
Confidence            3578999999999999887 788999999999875432 35779999887 89999999999998765432   368899


Q ss_pred             EEecCCC--CCcceeEEEEeCccccc
Q 021949           83 IKSDGLL--GDKTVGEVIVPIKELLD  106 (305)
Q Consensus        83 V~d~~~~--~d~~IG~~~vpL~~l~~  106 (305)
                      |||++..  ++++||++.|+|.++..
T Consensus        84 V~~~~~~~~~~~~lG~~~i~l~~~~~  109 (119)
T cd08685          84 VWNKLSKSRDSGLLGCMSFGVKSIVN  109 (119)
T ss_pred             EECCCCCcCCCEEEEEEEecHHHhcc
Confidence            9998876  47899999999999974

This CD contains members of the regulator of G-protein signaling (RGS) family. RGS is a GTPase activating protein which inhibits G-protein mediated signal transduction. The protein is largely cytosolic, but G-protein activation leads to translocation of this protein to the plasma membrane. A nuclear form of this protein has also been described, but its sequence has not been identified. There are multiple alternatively spliced transcript variants in this family with some members having additional domains (ex. PDZ and RGS) downstream of the C2 domain. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind pho

>cd04027 C2B_Munc13 C2 domain second repeat in Munc13 (mammalian uncoordinated) proteins

Probab=99.76  E-value=9.8e-18  Score=136.04  Aligned_cols=112  Identities=17%  Similarity=0.302  Sum_probs=91.6

Q ss_pred             eEEEEEEEecCCCCCCCCCCCCcEEEEEEecCCCCCCceEEeEecCCCCCCCeeeceEEEEeccchhccCceEEEEEEEe
Q 021949            6 ALDLNLISAKHLKDVHLISKMDVYAVVSISGDHTIKKQKVKSHVDRSGGSNPTWNFPIKFTFNQSLAQQNRLTLDFKIKS   85 (305)
Q Consensus         6 ~L~V~vvsA~dL~~~~~~gk~dpYv~v~l~~~~~~~~~~~kT~v~k~~~~nP~Wne~f~f~v~~~~~~~~~~~L~v~V~d   85 (305)
                      .|+|+|++|++|...+.+++.||||+|.+..      .+.+|+++++ +.||.|||+|.|.+....     ..|.|+|||
T Consensus         2 ~L~V~vi~a~~L~~~d~~g~~DPyv~v~~~~------~~~kT~~v~~-t~~P~Wne~f~f~~~~~~-----~~l~i~v~d   69 (127)
T cd04027           2 KISITVVCAQGLIAKDKTGTSDPYVTVQVGK------TKKRTKTIPQ-NLNPVWNEKFHFECHNSS-----DRIKVRVWD   69 (127)
T ss_pred             eEEEEEEECcCCcCCCCCCCcCcEEEEEECC------EeeecceecC-CCCCccceEEEEEecCCC-----CEEEEEEEE
Confidence            5899999999999998889999999999854      5789999887 899999999999885432     479999999


Q ss_pred             cCCC------------CCcceeEEEEeCcccccccCCCCCCCCCcceEEEEEeecC--CCCCccEEEEEE
Q 021949           86 DGLL------------GDKTVGEVIVPIKELLDSSSSSSSGDAKSMKFVTYQVRSS--SGKPKGELHFSY  141 (305)
Q Consensus        86 ~~~~------------~d~~IG~~~vpL~~l~~~~~~~~~~~g~~~~~~~~~l~~~--~g~~~G~l~lsl  141 (305)
                      ++..            .+++||++.++|.++.. .           ...||.|.+.  ..+.+|+|.|++
T Consensus        70 ~d~~~~~~~~~~~~~~~~~~iG~~~i~l~~~~~-~-----------~~~w~~L~~~~~~~~~~G~i~~~~  127 (127)
T cd04027          70 EDDDIKSRLKQKFTRESDDFLGQTIIEVRTLSG-E-----------MDVWYNLEKRTDKSAVSGAIRLHI  127 (127)
T ss_pred             CCCCcccccceeccccCCCcceEEEEEhHHccC-C-----------CCeEEECccCCCCCcEeEEEEEEC
Confidence            8742            58899999999998752 2           2467888764  345799999875

C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrev

>cd04017 C2D_Ferlin C2 domain fourth repeat in Ferlin

Probab=99.76  E-value=2e-17  Score=135.60  Aligned_cols=126  Identities=21%  Similarity=0.265  Sum_probs=97.2

Q ss_pred             eEEEEEEEecCCCCCCCCCCCCcEEEEEEecCCCCCCceEEeEecCCCCCCCeeeceEEEEeccc-----hhccCceEEE
Q 021949            6 ALDLNLISAKHLKDVHLISKMDVYAVVSISGDHTIKKQKVKSHVDRSGGSNPTWNFPIKFTFNQS-----LAQQNRLTLD   80 (305)
Q Consensus         6 ~L~V~vvsA~dL~~~~~~gk~dpYv~v~l~~~~~~~~~~~kT~v~k~~~~nP~Wne~f~f~v~~~-----~~~~~~~~L~   80 (305)
                      .|+|+|++|++|...+.+++.||||+|.+.+      .+.+|+++++ +.||+|||+|.|.+...     ....+...|.
T Consensus         2 ~l~v~V~~a~~L~~~d~~g~~dpyv~v~~~~------~~~kT~v~~~-t~nP~Wne~~~f~~~~~~~~~~~~~~~~~~l~   74 (135)
T cd04017           2 QLRAYIYQARDLLAADKSGLSDPFARVSFLN------QSQETEVIKE-TLSPTWDQTLIFDEVELYGSPEEIAQNPPLVV   74 (135)
T ss_pred             EEEEEEEEeecCcCCCCCCCCCCEEEEEECC------eeeEeeeEcC-CCCCccCcEEEEeeeeccCChHHhhcCCCEEE
Confidence            5899999999999988889999999999975      6889999887 89999999999985321     1111224799


Q ss_pred             EEEEecCCC-CCcceeEEEE-eCcccccccCCCCCCCCCcceEEEEEeecCCCCCccEEEEEEEEecc
Q 021949           81 FKIKSDGLL-GDKTVGEVIV-PIKELLDSSSSSSSGDAKSMKFVTYQVRSSSGKPKGELHFSYKFSEP  146 (305)
Q Consensus        81 v~V~d~~~~-~d~~IG~~~v-pL~~l~~~~~~~~~~~g~~~~~~~~~l~~~~g~~~G~l~lsl~~~~~  146 (305)
                      |+|||++.+ +|++||++.+ ++..+....      . ......|+.|.+ .++.+|+|.|++++.+.
T Consensus        75 v~V~d~d~~~~d~~iG~~~i~~~~~~~~~~------~-~~~~~~W~~L~~-~~~~~Geil~~~~~~~~  134 (135)
T cd04017          75 VELFDQDSVGKDEFLGRSVAKPLVKLDLEE------D-FPPKLQWFPIYK-GGQSAGELLAAFELIEV  134 (135)
T ss_pred             EEEEeCcCCCCCccceEEEeeeeeecccCC------C-CCCCceEEEeec-CCCchhheeEEeEEEEe
Confidence            999999887 7899999987 443333211      1 123567888874 56789999999998764

Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangeme

>cd08385 C2A_Synaptotagmin-1-5-6-9-10 C2A domain first repeat present in Synaptotagmins 1, 5, 6, 9, and 10

Probab=99.76  E-value=9.4e-18  Score=135.25  Aligned_cols=109  Identities=23%  Similarity=0.259  Sum_probs=89.5

Q ss_pred             ccceEEEEEEEecCCCCCCCCCCCCcEEEEEEecCCCCCCceEEeEecCCCCCCCeeeceEEEEeccchhccCceEEEEE
Q 021949            3 SYRALDLNLISAKHLKDVHLISKMDVYAVVSISGDHTIKKQKVKSHVDRSGGSNPTWNFPIKFTFNQSLAQQNRLTLDFK   82 (305)
Q Consensus         3 ~~~~L~V~vvsA~dL~~~~~~gk~dpYv~v~l~~~~~~~~~~~kT~v~k~~~~nP~Wne~f~f~v~~~~~~~~~~~L~v~   82 (305)
                      ..+.|+|+|++|++|...+..+..||||++.+.++.   ..+.+|+++++ +.||+|||+|.|.+....+.  ...|.|+
T Consensus        14 ~~~~L~V~v~~a~~L~~~d~~~~~dpyv~v~l~~~~---~~~~kT~v~~~-t~nP~wne~f~f~i~~~~l~--~~~l~~~   87 (124)
T cd08385          14 QSNQLTVGIIQAADLPAMDMGGTSDPYVKVYLLPDK---KKKFETKVHRK-TLNPVFNETFTFKVPYSELG--NKTLVFS   87 (124)
T ss_pred             CCCEEEEEEEEeeCCCCccCCCCCCCEEEEEEEcCC---CCceecccCcC-CCCCceeeeEEEeCCHHHhC--CCEEEEE
Confidence            357899999999999988888899999999997643   35789999887 79999999999998754332  2589999


Q ss_pred             EEecCCC-CCcceeEEEEeCcccccccCCCCCCCCCcceEEEEEee
Q 021949           83 IKSDGLL-GDKTVGEVIVPIKELLDSSSSSSSGDAKSMKFVTYQVR  127 (305)
Q Consensus        83 V~d~~~~-~d~~IG~~~vpL~~l~~~~~~~~~~~g~~~~~~~~~l~  127 (305)
                      |||++.+ .+++||++.|+|.++....          ....|+.|.
T Consensus        88 V~d~d~~~~~~~lG~~~i~l~~~~~~~----------~~~~W~~l~  123 (124)
T cd08385          88 VYDFDRFSKHDLIGEVRVPLLTVDLGH----------VTEEWRDLE  123 (124)
T ss_pred             EEeCCCCCCCceeEEEEEecCcccCCC----------CcceEEEcc
Confidence            9999887 7899999999999986432          246677763

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 1, a member of class 1 synaptotagmins, is located in the brain and endocranium and localized to the synaptic vesicles and secretory granules. It functions as a Ca2+ sensor for fast exocytosis as do synaptotagmins 5, 6, and 10. It is distinguished from the other synaptotagmins by having an N-glycosylated N-terminus. Synaptotagmins 5, 6, and 10, members of class 3 synaptotagmins, are located primarily in the brain and localized to the active zone and plasma membrane. They is distinguished from the other synaptotagmins by having disulfide bonds at its N-terminus. Synaptotagmin 6 also regulates the acrosome reaction, a unique Ca2+-regulated exocytosis, in sperm. Synaptotagmin 9, a class 5 synaptotagmins, is located in the brain and

>cd08394 C2A_Munc13 C2 domain first repeat in Munc13 (mammalian uncoordinated) proteins

Probab=99.76  E-value=1e-17  Score=134.90  Aligned_cols=100  Identities=23%  Similarity=0.285  Sum_probs=82.9

Q ss_pred             ceEEEEEEEecCCCCCCCCCCCCcEEEEEEecCCCCCCceEEeEecCCCCCCCeeeceEEEEeccchhccCceEEEEEEE
Q 021949            5 RALDLNLISAKHLKDVHLISKMDVYAVVSISGDHTIKKQKVKSHVDRSGGSNPTWNFPIKFTFNQSLAQQNRLTLDFKIK   84 (305)
Q Consensus         5 ~~L~V~vvsA~dL~~~~~~gk~dpYv~v~l~~~~~~~~~~~kT~v~k~~~~nP~Wne~f~f~v~~~~~~~~~~~L~v~V~   84 (305)
                      +.|.|+|++|++|...+   ..||||+|.+++      .+.+|+++++  .||+|||+|.|.+.+..     ..|.|+||
T Consensus         2 ~~L~V~Vv~Ar~L~~~~---~~dPYV~Ik~g~------~k~kT~v~~~--~nP~WnE~F~F~~~~~~-----~~L~v~V~   65 (127)
T cd08394           2 SLLCVLVKKAKLDGAPD---KFNTYVTLKVQN------VKSTTIAVRG--SQPCWEQDFMFEINRLD-----LGLVIELW   65 (127)
T ss_pred             ceEEEEEEEeeCCCCCC---CCCCeEEEEECC------EEeEeeECCC--CCCceeeEEEEEEcCCC-----CEEEEEEE
Confidence            57999999999998755   458999999976      6889999875  59999999999996532     36999999


Q ss_pred             ecCCCCCcceeEEEEeCcccccccCCCCCCCCCcceEEEEEeec
Q 021949           85 SDGLLGDKTVGEVIVPIKELLDSSSSSSSGDAKSMKFVTYQVRS  128 (305)
Q Consensus        85 d~~~~~d~~IG~~~vpL~~l~~~~~~~~~~~g~~~~~~~~~l~~  128 (305)
                      |++.+.|+|||++.|+|.++....    .    .....||+|..
T Consensus        66 dkd~~~DD~lG~v~i~L~~v~~~~----~----~~~~~Wy~L~~  101 (127)
T cd08394          66 NKGLIWDTLVGTVWIPLSTIRQSN----E----EGPGEWLTLDS  101 (127)
T ss_pred             eCCCcCCCceEEEEEEhHHcccCC----C----CCCCccEecCh
Confidence            999889999999999999998644    1    22366888875

C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrevi

>cd04041 C2A_fungal C2 domain first repeat; fungal group

Probab=99.76  E-value=5.7e-18  Score=134.18  Aligned_cols=97  Identities=19%  Similarity=0.256  Sum_probs=82.2

Q ss_pred             ceEEEEEEEecCCCCCCCC-CCCCcEEEEEEecCCCCCCceEEeEecCCCCCCCeeeceEEEEeccchhccCceEEEEEE
Q 021949            5 RALDLNLISAKHLKDVHLI-SKMDVYAVVSISGDHTIKKQKVKSHVDRSGGSNPTWNFPIKFTFNQSLAQQNRLTLDFKI   83 (305)
Q Consensus         5 ~~L~V~vvsA~dL~~~~~~-gk~dpYv~v~l~~~~~~~~~~~kT~v~k~~~~nP~Wne~f~f~v~~~~~~~~~~~L~v~V   83 (305)
                      ++|+|+|++|++|...+.+ +++||||+|++....   ..+.+|+++++ +.||+|||+|.|.+....+. ....|.|+|
T Consensus         1 G~L~V~v~~a~~L~~~d~~~~~~Dpyv~v~~~~~~---~~~~kT~v~~~-t~nP~Wne~f~f~~~~~~~~-~~~~l~~~V   75 (111)
T cd04041           1 GVLVVTIHRATDLPKADFGTGSSDPYVTASFAKFG---KPLYSTRIIRK-DLNPVWEETWFVLVTPDEVK-AGERLSCRL   75 (111)
T ss_pred             CEEEEEEEEeeCCCcccCCCCCCCccEEEEEccCC---CccEeeeeECC-CCCCccceeEEEEeCchhcc-CCCEEEEEE
Confidence            5799999999999998887 899999999996532   35789999988 79999999999988654221 125899999


Q ss_pred             EecCCC-CCcceeEEEEeCccccc
Q 021949           84 KSDGLL-GDKTVGEVIVPIKELLD  106 (305)
Q Consensus        84 ~d~~~~-~d~~IG~~~vpL~~l~~  106 (305)
                      ||++.+ .|++||++.++|.+|..
T Consensus        76 ~d~d~~~~dd~lG~~~i~l~~l~~   99 (111)
T cd04041          76 WDSDRFTADDRLGRVEIDLKELIE   99 (111)
T ss_pred             EeCCCCCCCCcceEEEEEHHHHhc
Confidence            999988 78999999999999984

C2 domains were first identified in Protein Kinase C (PKC). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligan

>cd08690 C2_Freud-1 C2 domain found in 5' repressor element under dual repression binding protein-1 (Freud-1)

Probab=99.76  E-value=3e-17  Score=137.23  Aligned_cols=133  Identities=18%  Similarity=0.279  Sum_probs=102.5

Q ss_pred             eEEEEEEEecCCC--CCCCCCCCCcEEEEEEecCCCCCCceEEeEecCCCCCCCeeeceEEEEeccchh----ccCceEE
Q 021949            6 ALDLNLISAKHLK--DVHLISKMDVYAVVSISGDHTIKKQKVKSHVDRSGGSNPTWNFPIKFTFNQSLA----QQNRLTL   79 (305)
Q Consensus         6 ~L~V~vvsA~dL~--~~~~~gk~dpYv~v~l~~~~~~~~~~~kT~v~k~~~~nP~Wne~f~f~v~~~~~----~~~~~~L   79 (305)
                      .++|+|++|++++  .....+.+||||++++.-.. ....+.||+++++ +.||+|||+|.|.|.....    ...+..|
T Consensus         3 ~~el~i~~~~~~~l~~~~~~~~~DpYVk~~l~~p~-~~~~k~KT~v~k~-TlnPvfNE~f~f~I~~~~~~~~R~l~~~~L   80 (155)
T cd08690           3 SIELTIVRCIGIPLPSGWNPKDLDTYVKFEFPYPN-EEPQSGKTSTIKD-TNSPEYNESFKLNINRKHRSFQRVFKRHGL   80 (155)
T ss_pred             ceEEEEEEeeccccCCCcCCCCCCeEEEEEEecCC-CCCceeecCcccC-CCCCcccceEEEEeccccchhhhhccCCcE
Confidence            4678888888854  44445689999999973221 1247999999988 8999999999999965421    1224579


Q ss_pred             EEEEEecCCC--CCcceeEEEEeCcccccccCCCCCCCCCcceEEEEEeecCCCCCccEEEEEEEEeccCCCC
Q 021949           80 DFKIKSDGLL--GDKTVGEVIVPIKELLDSSSSSSSGDAKSMKFVTYQVRSSSGKPKGELHFSYKFSEPTVGK  150 (305)
Q Consensus        80 ~v~V~d~~~~--~d~~IG~~~vpL~~l~~~~~~~~~~~g~~~~~~~~~l~~~~g~~~G~l~lsl~~~~~~~~~  150 (305)
                      +|+|||.+.+  .|++||++.|+|..+....          ....|+.|.+......|.|+|++++++...++
T Consensus        81 ~~~V~d~~~f~~~D~~iG~~~i~L~~l~~~~----------~~~~~~~L~~~~k~~Gg~l~v~ir~r~p~~~~  143 (155)
T cd08690          81 KFEVYHKGGFLRSDKLLGTAQVKLEPLETKC----------EIHESVDLMDGRKATGGKLEVKVRLREPLTGK  143 (155)
T ss_pred             EEEEEeCCCcccCCCeeEEEEEEcccccccC----------cceEEEEhhhCCCCcCCEEEEEEEecCCCccc
Confidence            9999999875  6999999999999997533          13568898876667889999999999887643

Freud-1 is a novel calcium-regulated repressor that negatively regulates basal 5-HT1A receptor expression in neurons. It may also play a role in the altered regulation of 5-HT1A receptors associated with anxiety or major depression. Freud-1 contains two DM-14 basic repeats, a helix-loop-helix DNA binding domain, and a C2 domain. The Freud-1 C2 domain is thought to be calcium insensitive and it lacks several acidic residues that mediate calcium binding of the PKC C2 domain. In addition, it contains a poly-basic insert that is not present in calcium-dependent C2 domains and may function as a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules tha

>cd04021 C2_E3_ubiquitin_ligase C2 domain present in E3 ubiquitin ligase

Probab=99.76  E-value=2.4e-17  Score=133.44  Aligned_cols=119  Identities=29%  Similarity=0.397  Sum_probs=94.9

Q ss_pred             ceEEEEEEEecCCCCCCCCCCCCcEEEEEEecCCCCCCceEEeEecCCCCCCCeeeceEEEEeccchhccCceEEEEEEE
Q 021949            5 RALDLNLISAKHLKDVHLISKMDVYAVVSISGDHTIKKQKVKSHVDRSGGSNPTWNFPIKFTFNQSLAQQNRLTLDFKIK   84 (305)
Q Consensus         5 ~~L~V~vvsA~dL~~~~~~gk~dpYv~v~l~~~~~~~~~~~kT~v~k~~~~nP~Wne~f~f~v~~~~~~~~~~~L~v~V~   84 (305)
                      ..|+|+|++|+ |...+.++++||||+|++.+     ..+.+|+++++ +.||.|||+|.|.+...      ..|.|+||
T Consensus         2 ~~L~V~i~~a~-l~~~~~~~~~dPyv~v~~~~-----~~~~kT~v~~~-t~~P~Wne~f~~~~~~~------~~l~~~V~   68 (125)
T cd04021           2 SQLQITVESAK-LKSNSKSFKPDPYVEVTVDG-----QPPKKTEVSKK-TSNPKWNEHFTVLVTPQ------STLEFKVW   68 (125)
T ss_pred             ceEEEEEEeeE-CCCCCcCCCCCeEEEEEECC-----cccEEeeeeCC-CCCCccccEEEEEeCCC------CEEEEEEE
Confidence            46999999999 55555578999999999975     24789999877 89999999999998643      48999999


Q ss_pred             ecCCC-CCcceeEEEEeCcccccccCCCCCCCCCcceEEEEEeecCC---CCCccEEEEEE
Q 021949           85 SDGLL-GDKTVGEVIVPIKELLDSSSSSSSGDAKSMKFVTYQVRSSS---GKPKGELHFSY  141 (305)
Q Consensus        85 d~~~~-~d~~IG~~~vpL~~l~~~~~~~~~~~g~~~~~~~~~l~~~~---g~~~G~l~lsl  141 (305)
                      |++.+ .|++||++.++|.++....    .+.- +....|+.+.+++   ++..|+|++++
T Consensus        69 d~~~~~~~~~iG~~~i~l~~l~~~~----~~~~-~~~~~~~~~~~~~~~~~~~~G~~~~~~  124 (125)
T cd04021          69 SHHTLKADVLLGEASLDLSDILKNH----NGKL-ENVKLTLNLSSENKGSSVKVGELTVIL  124 (125)
T ss_pred             eCCCCCCCcEEEEEEEEHHHhHhhc----CCCc-cceEEEEEEEccCCCcceeeeeEEEEe
Confidence            99988 7899999999999998644    2211 1235688888644   47799999876

E3 ubiquitin ligase is part of the ubiquitylation mechanism responsible for controlling surface expression of membrane proteins. The sequential action of several enzymes are involved: ubiquitin-activating enzyme E1, ubiquitin-conjugating enzyme E2, and ubiquitin-protein ligase E3 which is responsible for substrate recognition and promoting the transfer of ubiquitin to the target protein. E3 ubiquitin ligase is composed of an N-terminal C2 domain, 4 WW domains, and a HECTc domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction e

>cd04043 C2_Munc13_fungal C2 domain in Munc13 (mammalian uncoordinated) proteins; fungal group

Probab=99.75  E-value=3.7e-17  Score=132.06  Aligned_cols=121  Identities=12%  Similarity=0.181  Sum_probs=97.1

Q ss_pred             eEEEEEEEecCCCCCCCCCCCCcEEEEEEecCCCCCCceEEeEecCCCCCCCeeeceEEEEeccchhccCceEEEEEEEe
Q 021949            6 ALDLNLISAKHLKDVHLISKMDVYAVVSISGDHTIKKQKVKSHVDRSGGSNPTWNFPIKFTFNQSLAQQNRLTLDFKIKS   85 (305)
Q Consensus         6 ~L~V~vvsA~dL~~~~~~gk~dpYv~v~l~~~~~~~~~~~kT~v~k~~~~nP~Wne~f~f~v~~~~~~~~~~~L~v~V~d   85 (305)
                      .|+|+|++|++|+..+..+++||||++.+....   ..+.||+++++ +.||.|||+|.|.+....    ...|.|+|||
T Consensus         2 ~~~V~v~~a~~L~~~~~~~~~Dpyv~v~~~~~~---~~~~kT~~~~~-t~~P~Wne~f~f~i~~~~----~~~L~i~v~d   73 (126)
T cd04043           2 LFTIRIVRAENLKADSSNGLSDPYVTLVDTNGK---RRIAKTRTIYD-TLNPRWDEEFELEVPAGE----PLWISATVWD   73 (126)
T ss_pred             EEEEEEEEeECCCCCCCCCCCCceEEEEECCCC---eeeecccEecC-CCCCcccceEEEEcCCCC----CCEEEEEEEE
Confidence            589999999999998888999999999976431   25789999887 799999999999997642    2589999999


Q ss_pred             cCCC-CCcceeEEEEeCcccccccCCCCCCCCCcceEEEEEeecCCCCCccEEEEEEEEecc
Q 021949           86 DGLL-GDKTVGEVIVPIKELLDSSSSSSSGDAKSMKFVTYQVRSSSGKPKGELHFSYKFSEP  146 (305)
Q Consensus        86 ~~~~-~d~~IG~~~vpL~~l~~~~~~~~~~~g~~~~~~~~~l~~~~g~~~G~l~lsl~~~~~  146 (305)
                      ++.+ .+++||++.++|.++....    .+   .....|+.|..     .|+|+|.+.+.-.
T Consensus        74 ~d~~~~~~~iG~~~i~l~~~~~~~----~~---~~~~~w~~l~~-----~g~i~l~~~~~~~  123 (126)
T cd04043          74 RSFVGKHDLCGRASLKLDPKRFGD----DG---LPREIWLDLDT-----QGRLLLRVSMEGE  123 (126)
T ss_pred             CCCCCCCceEEEEEEecCHHHcCC----CC---CCceEEEEcCC-----CCeEEEEEEEeee
Confidence            9887 7899999999999875321    11   12467888863     6899999888654

C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synap

>cd08387 C2A_Synaptotagmin-8 C2A domain first repeat present in Synaptotagmin 8

Probab=99.75  E-value=1.4e-17  Score=134.22  Aligned_cols=109  Identities=19%  Similarity=0.267  Sum_probs=90.2

Q ss_pred             ccceEEEEEEEecCCCCCCCCCCCCcEEEEEEecCCCCCCceEEeEecCCCCCCCeeeceEEEEeccchhccCceEEEEE
Q 021949            3 SYRALDLNLISAKHLKDVHLISKMDVYAVVSISGDHTIKKQKVKSHVDRSGGSNPTWNFPIKFTFNQSLAQQNRLTLDFK   82 (305)
Q Consensus         3 ~~~~L~V~vvsA~dL~~~~~~gk~dpYv~v~l~~~~~~~~~~~kT~v~k~~~~nP~Wne~f~f~v~~~~~~~~~~~L~v~   82 (305)
                      ..+.|.|+|++|++|...+..+..||||++.+....   ..+.+|+++++ +.||+|||+|.|.+....+  ....|.|+
T Consensus        14 ~~~~L~V~v~~a~~L~~~d~~g~~dpyv~v~l~~~~---~~~~kT~v~~~-t~~P~wne~f~f~v~~~~l--~~~~l~i~   87 (124)
T cd08387          14 DMGILNVKLIQARNLQPRDFSGTADPYCKVRLLPDR---SNTKQSKIHKK-TLNPEFDESFVFEVPPQEL--PKRTLEVL   87 (124)
T ss_pred             CCCEEEEEEEEeeCCCCCCCCCCCCCeEEEEEecCC---CCcEeCceEcC-CCCCCcccEEEEeCCHHHh--CCCEEEEE
Confidence            357899999999999998888999999999996432   35789999887 8999999999999876543  23589999


Q ss_pred             EEecCCC-CCcceeEEEEeCcccccccCCCCCCCCCcceEEEEEee
Q 021949           83 IKSDGLL-GDKTVGEVIVPIKELLDSSSSSSSGDAKSMKFVTYQVR  127 (305)
Q Consensus        83 V~d~~~~-~d~~IG~~~vpL~~l~~~~~~~~~~~g~~~~~~~~~l~  127 (305)
                      |||++.+ +|++||++.|+|.++....          ....||.|.
T Consensus        88 V~d~~~~~~~~~iG~~~i~l~~~~~~~----------~~~~W~~l~  123 (124)
T cd08387          88 LYDFDQFSRDECIGVVELPLAEVDLSE----------KLDLWRKIQ  123 (124)
T ss_pred             EEECCCCCCCceeEEEEEecccccCCC----------CcceEEECc
Confidence            9999888 7899999999999997433          236688775

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involv

>cd00275 C2_PLC_like C2 domain present in Phosphoinositide-specific phospholipases C (PLC)

Probab=99.75  E-value=5.5e-17  Score=131.05  Aligned_cols=122  Identities=23%  Similarity=0.331  Sum_probs=98.0

Q ss_pred             ceEEEEEEEecCCCCCC--CCCCCCcEEEEEEecCCCCCCceEEeEecCCCCCCCeeeceEEEEeccchhccCceEEEEE
Q 021949            5 RALDLNLISAKHLKDVH--LISKMDVYAVVSISGDHTIKKQKVKSHVDRSGGSNPTWNFPIKFTFNQSLAQQNRLTLDFK   82 (305)
Q Consensus         5 ~~L~V~vvsA~dL~~~~--~~gk~dpYv~v~l~~~~~~~~~~~kT~v~k~~~~nP~Wne~f~f~v~~~~~~~~~~~L~v~   82 (305)
                      ..|+|+|++|++|+..+  ..+..||||++++.........+.+|+++++++.||+|||+|.|.+.....    ..|.|+
T Consensus         2 ~~l~v~vi~a~~L~~~~~~~~~~~dpyv~v~l~~~~~~~~~~~kT~~~~~~~~~P~w~e~f~f~~~~~~~----~~l~~~   77 (128)
T cd00275           2 LTLTIKIISGQQLPKPKGDKGSIVDPYVEVEIHGLPADDSAKFKTKVVKNNGFNPVWNETFEFDVTVPEL----AFLRFV   77 (128)
T ss_pred             eEEEEEEEeeecCCCCCCCCCCccCCEEEEEEEeCCCCCCCcEeeeeecCCCcCCccCCcEEEEEeCCCe----EEEEEE
Confidence            36999999999999877  578899999999975432124689999987755699999999999874432    479999


Q ss_pred             EEecCCCCCcceeEEEEeCcccccccCCCCCCCCCcceEEEEEeecCCC--CCccEEEEEEEE
Q 021949           83 IKSDGLLGDKTVGEVIVPIKELLDSSSSSSSGDAKSMKFVTYQVRSSSG--KPKGELHFSYKF  143 (305)
Q Consensus        83 V~d~~~~~d~~IG~~~vpL~~l~~~~~~~~~~~g~~~~~~~~~l~~~~g--~~~G~l~lsl~~  143 (305)
                      |||++..++++||++.++|.+|.. .            ..+++|+++++  ...|+|.+.+++
T Consensus        78 V~d~~~~~~~~iG~~~~~l~~l~~-g------------~~~~~l~~~~~~~~~~~~l~v~~~~  127 (128)
T cd00275          78 VYDEDSGDDDFLGQACLPLDSLRQ-G------------YRHVPLLDSKGEPLELSTLFVHIDI  127 (128)
T ss_pred             EEeCCCCCCcEeEEEEEEhHHhcC-c------------eEEEEecCCCCCCCcceeEEEEEEE
Confidence            999987788999999999999863 2            45688888766  457888888876

PLCs are involved in the hydrolysis of phosphatidylinositol-4,5-bisphosphate (PIP2) to d-myo-inositol-1,4,5-trisphosphate (1,4,5-IP3) and sn-1,2-diacylglycerol (DAG). 1,4,5-IP3 and DAG are second messengers in eukaryotic signal transduction cascades. PLC is composed of a N-terminal PH domain followed by a series of EF hands, a catalytic TIM barrel and a C-terminal C2 domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking

>cd04050 C2B_Synaptotagmin-like C2 domain second repeat present in Synaptotagmin-like proteins

Probab=99.75  E-value=1.3e-17  Score=130.82  Aligned_cols=101  Identities=23%  Similarity=0.343  Sum_probs=85.6

Q ss_pred             EEEEEEEecCCCCCCCCCCCCcEEEEEEecCCCCCCceEEeEecCCCCCCCeeeceEEEEeccchhccCceEEEEEEEec
Q 021949            7 LDLNLISAKHLKDVHLISKMDVYAVVSISGDHTIKKQKVKSHVDRSGGSNPTWNFPIKFTFNQSLAQQNRLTLDFKIKSD   86 (305)
Q Consensus         7 L~V~vvsA~dL~~~~~~gk~dpYv~v~l~~~~~~~~~~~kT~v~k~~~~nP~Wne~f~f~v~~~~~~~~~~~L~v~V~d~   86 (305)
                      |.|+|++|++|+..+..+.+||||+|++.+      ++++|+++++ +.||.|||+|.|.+.....    ..|.|+|||+
T Consensus         2 L~V~v~~A~~L~~~~~~~~~dpyv~v~~~~------~~~kT~v~~~-t~nP~Wne~f~f~v~~~~~----~~l~v~v~d~   70 (105)
T cd04050           2 LFVYLDSAKNLPLAKSTKEPSPYVELTVGK------TTQKSKVKER-TNNPVWEEGFTFLVRNPEN----QELEIEVKDD   70 (105)
T ss_pred             EEEEEeeecCCCCcccCCCCCcEEEEEECC------EEEeCccccC-CCCCcccceEEEEeCCCCC----CEEEEEEEEC
Confidence            899999999999988888999999999976      6889999877 8999999999999976432    4799999998


Q ss_pred             CCCCCcceeEEEEeCcccccccCCCCCCCCCcceEEEEEeec
Q 021949           87 GLLGDKTVGEVIVPIKELLDSSSSSSSGDAKSMKFVTYQVRS  128 (305)
Q Consensus        87 ~~~~d~~IG~~~vpL~~l~~~~~~~~~~~g~~~~~~~~~l~~  128 (305)
                      +.  +++||++.|+|.++....    .    .....||.|..
T Consensus        71 ~~--~~~iG~~~i~l~~l~~~~----~----~~~~~w~~L~~  102 (105)
T cd04050          71 KT--GKSLGSLTLPLSELLKEP----D----LTLDQPFPLDN  102 (105)
T ss_pred             CC--CCccEEEEEEHHHhhccc----c----ceeeeeEecCC
Confidence            86  889999999999998532    1    23477888864

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular perm

>cd08388 C2A_Synaptotagmin-4-11 C2A domain first repeat present in Synaptotagmins 4 and 11

Probab=99.75  E-value=2.6e-17  Score=133.85  Aligned_cols=99  Identities=24%  Similarity=0.346  Sum_probs=82.3

Q ss_pred             ccceEEEEEEEecCCCCCCCC-CCCCcEEEEEEecCCCCCCceEEeEecCCCCCCCeeeceEEE-EeccchhccCceEEE
Q 021949            3 SYRALDLNLISAKHLKDVHLI-SKMDVYAVVSISGDHTIKKQKVKSHVDRSGGSNPTWNFPIKF-TFNQSLAQQNRLTLD   80 (305)
Q Consensus         3 ~~~~L~V~vvsA~dL~~~~~~-gk~dpYv~v~l~~~~~~~~~~~kT~v~k~~~~nP~Wne~f~f-~v~~~~~~~~~~~L~   80 (305)
                      ...+|+|+|++|++|+..+.. +..||||+|++..+.   ..+.||+++++ +.||+|||+|.| .+.....  .+..|+
T Consensus        14 ~~~~L~V~Vi~a~~L~~~~~~~~~~DpyV~v~l~~~~---~~~~kT~v~~~-t~nP~wnE~F~f~~~~~~~~--~~~~L~   87 (128)
T cd08388          14 EKKALLVNIIECRDLPAMDEQSGTSDPYVKLQLLPEK---EHKVKTRVLRK-TRNPVYDETFTFYGIPYNQL--QDLSLH   87 (128)
T ss_pred             CCCEEEEEEEEeECCCCCCCCCCCcCCEEEEEEeCCc---CceeeccEEcC-CCCCceeeEEEEcccCHHHh--CCCEEE
Confidence            357899999999999988775 889999999997543   35789999888 899999999999 4554332  235799


Q ss_pred             EEEEecCCC-CCcceeEEEEeCcccccc
Q 021949           81 FKIKSDGLL-GDKTVGEVIVPIKELLDS  107 (305)
Q Consensus        81 v~V~d~~~~-~d~~IG~~~vpL~~l~~~  107 (305)
                      |+|||++.+ +|++||++.|+|.++...
T Consensus        88 ~~V~d~d~~~~d~~lG~~~i~L~~l~~~  115 (128)
T cd08388          88 FAVLSFDRYSRDDVIGEVVCPLAGADLL  115 (128)
T ss_pred             EEEEEcCCCCCCceeEEEEEeccccCCC
Confidence            999999877 899999999999999653

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmins 4 and 11, class 4 synaptotagmins, are located in the brain. Their functions are unknown. They are distinguished from the other synaptotagmins by having and Asp to Ser substitution in their C2A domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence

>cd08691 C2_NEDL1-like C2 domain present in NEDL1 (NEDD4-like ubiquitin protein ligase-1)

Probab=99.75  E-value=4.5e-17  Score=133.83  Aligned_cols=121  Identities=19%  Similarity=0.337  Sum_probs=94.5

Q ss_pred             eEEEEEEEecCCCCCCCCCCCCcEEEEEEecCCCC-------CCceEEeEecCCCCCCCee-eceEEEEeccchhccCce
Q 021949            6 ALDLNLISAKHLKDVHLISKMDVYAVVSISGDHTI-------KKQKVKSHVDRSGGSNPTW-NFPIKFTFNQSLAQQNRL   77 (305)
Q Consensus         6 ~L~V~vvsA~dL~~~~~~gk~dpYv~v~l~~~~~~-------~~~~~kT~v~k~~~~nP~W-ne~f~f~v~~~~~~~~~~   77 (305)
                      .+.|++++|++|+ .++++++||||++++......       ..++++|+++++ +.||+| ||+|.|.+...      .
T Consensus         2 ~~~~~~~~A~~L~-~~~fg~~DPyvki~~~~~~~~~~~~~~~~~~~~kT~v~~~-tlnP~W~nE~f~f~v~~~------~   73 (137)
T cd08691           2 SFSLSGLQARNLK-KGMFFNPDPYVKISIQPGKRHIFPALPHHGQECRTSIVEN-TINPVWHREQFVFVGLPT------D   73 (137)
T ss_pred             EEEEEEEEeCCCC-CccCCCCCceEEEEEECCCcccccccccccceeeeeeEcC-CCCCceEceEEEEEcCCC------C
Confidence            5789999999998 678899999999999753210       024789999987 899999 99999998543      3


Q ss_pred             EEEEEEEecCCC----CCcceeEEEEeCcccccccCCCCCCCCCcceEEEEEeecC--CCCCccEEEEEE
Q 021949           78 TLDFKIKSDGLL----GDKTVGEVIVPIKELLDSSSSSSSGDAKSMKFVTYQVRSS--SGKPKGELHFSY  141 (305)
Q Consensus        78 ~L~v~V~d~~~~----~d~~IG~~~vpL~~l~~~~~~~~~~~g~~~~~~~~~l~~~--~g~~~G~l~lsl  141 (305)
                      .|+|+|||++..    .|++||++.|+|.+|+...    ..   .....||+|.+.  .+..+|+|.|.+
T Consensus        74 ~L~v~V~D~~~~~~~~~~d~lG~~~i~l~~l~~~~----~~---~~~~~~~~l~k~~~~s~v~G~~~l~~  136 (137)
T cd08691          74 VLEIEVKDKFAKSRPIIRRFLGKLSIPVQRLLERH----AI---GDQELSYTLGRRTPTDHVSGQLTFRF  136 (137)
T ss_pred             EEEEEEEecCCCCCccCCceEEEEEEEHHHhcccc----cC---CceEEEEECCcCCCCCcEEEEEEEEe
Confidence            799999997543    2799999999999998644    21   135678888864  456788888876

NEDL1 (AKA HECW1(HECT, C2 and WW domain containing E3 ubiquitin protein ligase 1)) is a newly identified HECT-type E3 ubiquitin protein ligase highly expressed in favorable neuroblastomas. In vertebrates it is found primarily in neuronal tissues, including the spinal cord. NEDL1 is thought to normally function in the quality control of cellular proteins by eliminating misfolded proteins. This is thought to be accomplished via a mechanism analogous to that of ER-associated degradation by forming tight complexes and aggregating misfolded proteins that have escaped ubiquitin-mediated degradation. NEDL1, is composed of a C2 domain, two WW domains, and a ubiquitin ligase Hect domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are C

>cd04030 C2C_KIAA1228 C2 domain third repeat present in uncharacterized human KIAA1228-like proteins

Probab=99.75  E-value=2.5e-17  Score=133.12  Aligned_cols=110  Identities=20%  Similarity=0.275  Sum_probs=89.5

Q ss_pred             ccceEEEEEEEecCCCCCCCCCCCCcEEEEEEecCCCCCCceEEeEecCCCCCCCeeeceEEEEeccchhccCceEEEEE
Q 021949            3 SYRALDLNLISAKHLKDVHLISKMDVYAVVSISGDHTIKKQKVKSHVDRSGGSNPTWNFPIKFTFNQSLAQQNRLTLDFK   82 (305)
Q Consensus         3 ~~~~L~V~vvsA~dL~~~~~~gk~dpYv~v~l~~~~~~~~~~~kT~v~k~~~~nP~Wne~f~f~v~~~~~~~~~~~L~v~   82 (305)
                      ..+.|+|+|++|++|...+.++..||||+|.+..... ...++||+++++ +.||+|||+|.|.+....+.  ...|.|.
T Consensus        14 ~~~~L~V~vi~a~~L~~~~~~~~~dpyv~v~l~~~~~-~~~~~kT~v~~~-~~nP~wne~f~f~i~~~~l~--~~~l~i~   89 (127)
T cd04030          14 QRQKLIVTVHKCRNLPPCDSSDIPDPYVRLYLLPDKS-KSTRRKTSVKKD-NLNPVFDETFEFPVSLEELK--RRTLDVA   89 (127)
T ss_pred             CCCEEEEEEEEEECCCCccCCCCCCceEEEEEEcCCC-CCceEecccccC-CCCCEECeEEEEecCHHHhc--CCEEEEE
Confidence            3578999999999999998889999999999975432 246889999988 79999999999998765432  2589999


Q ss_pred             EEecCCC---CCcceeEEEEeCcccccccCCCCCCCCCcceEEEEEe
Q 021949           83 IKSDGLL---GDKTVGEVIVPIKELLDSSSSSSSGDAKSMKFVTYQV  126 (305)
Q Consensus        83 V~d~~~~---~d~~IG~~~vpL~~l~~~~~~~~~~~g~~~~~~~~~l  126 (305)
                      |||++.+   +|++||++.|+|.++....          ....||.|
T Consensus        90 v~~~~~~~~~~~~~iG~~~i~l~~l~~~~----------~~~~W~~L  126 (127)
T cd04030          90 VKNSKSFLSREKKLLGQVLIDLSDLDLSK----------GFTQWYDL  126 (127)
T ss_pred             EEECCcccCCCCceEEEEEEecccccccC----------CccceEEC
Confidence            9999864   6899999999999986433          23667766

KIAA proteins are uncharacterized human proteins. They were compiled by the Kazusa mammalian cDNA project which identified more than 2000 human genes. They are identified by 4 digit codes that precede the KIAA designation. Many KIAA genes are still functionally uncharacterized including KIAA1228. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1

>cd04011 C2B_Ferlin C2 domain second repeat in Ferlin

Probab=99.74  E-value=2.5e-17  Score=130.43  Aligned_cols=106  Identities=17%  Similarity=0.229  Sum_probs=86.0

Q ss_pred             ceEEEEEEEecCCCCCCCCCCCCcEEEEEEecCCCCCCceEEeEecCCCCCCCeeeceEEEEeccchhccCceEEEEEEE
Q 021949            5 RALDLNLISAKHLKDVHLISKMDVYAVVSISGDHTIKKQKVKSHVDRSGGSNPTWNFPIKFTFNQSLAQQNRLTLDFKIK   84 (305)
Q Consensus         5 ~~L~V~vvsA~dL~~~~~~gk~dpYv~v~l~~~~~~~~~~~kT~v~k~~~~nP~Wne~f~f~v~~~~~~~~~~~L~v~V~   84 (305)
                      ..|+|+|++|++|.    .+..||||++++.+      ++++|+++++ +.||.|||+|.|.+.....+..+..|.|+||
T Consensus         4 ~~l~V~v~~a~~L~----~~~~dpyv~v~~~~------~~~kT~~~~~-t~nP~wne~f~f~~~~~~~~l~~~~l~i~V~   72 (111)
T cd04011           4 FQVRVRVIEARQLV----GGNIDPVVKVEVGG------QKKYTSVKKG-TNCPFYNEYFFFNFHESPDELFDKIIKISVY   72 (111)
T ss_pred             EEEEEEEEEcccCC----CCCCCCEEEEEECC------EeeeeeEEec-cCCCccccEEEEecCCCHHHHhcCeEEEEEE
Confidence            46999999999998    46799999999986      5778999877 7999999999999755433223358999999


Q ss_pred             ecCCC-CCcceeEEEEeCcccccccCCCCCCCCCcceEEEEEeec
Q 021949           85 SDGLL-GDKTVGEVIVPIKELLDSSSSSSSGDAKSMKFVTYQVRS  128 (305)
Q Consensus        85 d~~~~-~d~~IG~~~vpL~~l~~~~~~~~~~~g~~~~~~~~~l~~  128 (305)
                      |++.+ +|++||++.|+|.++....    ..   .+...|+.|.+
T Consensus        73 d~~~~~~~~~iG~~~i~l~~v~~~~----~~---~~~~~w~~L~~  110 (111)
T cd04011          73 DSRSLRSDTLIGSFKLDVGTVYDQP----DH---AFLRKWLLLTD  110 (111)
T ss_pred             cCcccccCCccEEEEECCccccCCC----CC---cceEEEEEeeC
Confidence            99887 7899999999999998543    11   24577888875

Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangeme

>cd08521 C2A_SLP C2 domain first repeat present in Synaptotagmin-like proteins

Probab=99.74  E-value=2.5e-17  Score=132.33  Aligned_cols=100  Identities=19%  Similarity=0.313  Sum_probs=83.3

Q ss_pred             ccceEEEEEEEecCCCCCC-CCCCCCcEEEEEEecCCCCCCceEEeEecCCCCCCCeeeceEEEEeccchhccCceEEEE
Q 021949            3 SYRALDLNLISAKHLKDVH-LISKMDVYAVVSISGDHTIKKQKVKSHVDRSGGSNPTWNFPIKFTFNQSLAQQNRLTLDF   81 (305)
Q Consensus         3 ~~~~L~V~vvsA~dL~~~~-~~gk~dpYv~v~l~~~~~~~~~~~kT~v~k~~~~nP~Wne~f~f~v~~~~~~~~~~~L~v   81 (305)
                      ..+.|+|+|++|++|+..+ ..+..||||+|.+.++... ..+.+|+++++ +.||+|||+|.|.+....+.  ...|.|
T Consensus        12 ~~~~L~V~v~~a~~L~~~~~~~~~~dpyv~v~l~~~~~~-~~~~kT~v~~~-t~~P~wne~f~f~i~~~~l~--~~~l~i   87 (123)
T cd08521          12 KTGSLEVHIKECRNLAYADEKKKRSNPYVKVYLLPDKSK-QSKRKTSVKKN-TTNPVFNETLKYHISKSQLE--TRTLQL   87 (123)
T ss_pred             CCCEEEEEEEEecCCCCcCCCCCCCCcEEEEEEecCCCc-CceeeccccCC-CCCCcccceEEEeCCHHHhC--CCEEEE
Confidence            3578999999999999887 6789999999998654321 35789999877 89999999999998765432  358999


Q ss_pred             EEEecCCC-CCcceeEEEEeCccccc
Q 021949           82 KIKSDGLL-GDKTVGEVIVPIKELLD  106 (305)
Q Consensus        82 ~V~d~~~~-~d~~IG~~~vpL~~l~~  106 (305)
                      +|||++.+ ++++||++.++|.++..
T Consensus        88 ~v~d~~~~~~~~~iG~~~i~l~~l~~  113 (123)
T cd08521          88 SVWHHDRFGRNTFLGEVEIPLDSWDL  113 (123)
T ss_pred             EEEeCCCCcCCceeeEEEEecccccc
Confidence            99999877 78999999999999964

All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. Slp1/JFC1 and Slp2/exophilin 4 promote granule docking to the plasma membrane. Additionally, their C2A domains are both Ca2+ independent, unlike the case in Slp3 and Slp4/granuphilin in which their C2A domains are Ca2+ dependent. It is thought that SHD (except for the Slp4-SHD) functions as a specific Rab27A/B-binding domain. In addition to Slps, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. It has been demonstrated that Slp3 and Slp4/granuphilin promote dense-core vesicle exocytosis. Slp5 mRNA has been shown to be restricted to human placenta and liver suggesting a role in Rab27A-dependent membrane trafficking in specific tissues. C2 domains fold into

>cd04045 C2C_Tricalbin-like C2 domain third repeat present in Tricalbin-like proteins

Probab=99.74  E-value=2.4e-17  Score=132.59  Aligned_cols=104  Identities=18%  Similarity=0.310  Sum_probs=88.3

Q ss_pred             ceEEEEEEEecCCCCCCCCCCCCcEEEEEEecCCCCCCceEEeEecCCCCCCCeeeceEEEEeccchhccCceEEEEEEE
Q 021949            5 RALDLNLISAKHLKDVHLISKMDVYAVVSISGDHTIKKQKVKSHVDRSGGSNPTWNFPIKFTFNQSLAQQNRLTLDFKIK   84 (305)
Q Consensus         5 ~~L~V~vvsA~dL~~~~~~gk~dpYv~v~l~~~~~~~~~~~kT~v~k~~~~nP~Wne~f~f~v~~~~~~~~~~~L~v~V~   84 (305)
                      +.|+|+|++|++|++.+.++++||||+|++.+     ..+.+|+++++ +.||.|||+|.|.+....     ..|.|+||
T Consensus         1 g~L~V~Vi~a~~L~~~d~~g~~DPYv~v~~~~-----~~~~kT~~~~~-t~~P~Wne~f~~~v~~~~-----~~L~v~v~   69 (120)
T cd04045           1 GVLRLHIRKANDLKNLEGVGKIDPYVRVLVNG-----IVKGRTVTISN-TLNPVWDEVLYVPVTSPN-----QKITLEVM   69 (120)
T ss_pred             CeEEEEEEeeECCCCccCCCCcCCEEEEEECC-----EEeeceeEECC-CcCCccCceEEEEecCCC-----CEEEEEEE
Confidence            57999999999999998889999999999965     35788988877 899999999999886542     48999999


Q ss_pred             ecCCC-CCcceeEEEEeCcccccccCCCCCCCCCcceEEEEEeecCC
Q 021949           85 SDGLL-GDKTVGEVIVPIKELLDSSSSSSSGDAKSMKFVTYQVRSSS  130 (305)
Q Consensus        85 d~~~~-~d~~IG~~~vpL~~l~~~~~~~~~~~g~~~~~~~~~l~~~~  130 (305)
                      |++.+ .|++||++.++|.++....           ...||.+.+.+
T Consensus        70 d~~~~~~d~~IG~~~~~l~~l~~~~-----------~~~~~~~~~~~  105 (120)
T cd04045          70 DYEKVGKDRSLGSVEINVSDLIKKN-----------EDGKYVEYDDE  105 (120)
T ss_pred             ECCCCCCCCeeeEEEEeHHHhhCCC-----------CCceEEecCCC
Confidence            99888 7889999999999998533           36688887643

5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain.

>cd08688 C2_KIAA0528-like C2 domain found in the Human KIAA0528 cDNA clone

Probab=99.73  E-value=2.8e-17  Score=129.95  Aligned_cols=106  Identities=16%  Similarity=0.294  Sum_probs=86.4

Q ss_pred             EEEEEEEecCCCCCCC-CCCCCcEEEEEEecCCCCCCceEEeEecCCCCCCCee-eceEEEEeccchhccCceEEEEEEE
Q 021949            7 LDLNLISAKHLKDVHL-ISKMDVYAVVSISGDHTIKKQKVKSHVDRSGGSNPTW-NFPIKFTFNQSLAQQNRLTLDFKIK   84 (305)
Q Consensus         7 L~V~vvsA~dL~~~~~-~gk~dpYv~v~l~~~~~~~~~~~kT~v~k~~~~nP~W-ne~f~f~v~~~~~~~~~~~L~v~V~   84 (305)
                      |+|+|++|++|+..+. .+.+||||++++.+      .+.||+++++ +.||.| ||+|.|.+....+.  +..|+|+||
T Consensus         1 l~V~v~~a~~L~~~d~~~~~~Dpyv~v~~~~------~~~kT~v~~~-~~nP~W~ne~f~f~i~~~~l~--~~~l~i~V~   71 (110)
T cd08688           1 LKVRVVAARDLPVMDRSSDLTDAFVEVKFGS------TTYKTDVVKK-SLNPVWNSEWFRFEVDDEELQ--DEPLQIRVM   71 (110)
T ss_pred             CEEEEEEEECCCccccCCCCCCceEEEEECC------eeEecceecC-CCCCcccCcEEEEEcChHHcC--CCeEEEEEE
Confidence            6899999999998774 57899999999975      6889999987 799999 99999999765432  248999999


Q ss_pred             ecCCC-CCcceeEEEEeCcccccccCCCCCCCCCcceEEEEEeec
Q 021949           85 SDGLL-GDKTVGEVIVPIKELLDSSSSSSSGDAKSMKFVTYQVRS  128 (305)
Q Consensus        85 d~~~~-~d~~IG~~~vpL~~l~~~~~~~~~~~g~~~~~~~~~l~~  128 (305)
                      |++.+ ++++||++.++|.++....      +.. ....||.|.+
T Consensus        72 d~d~~~~~~~iG~~~~~l~~l~~~~------~~~-~~~~w~~l~~  109 (110)
T cd08688          72 DHDTYSANDAIGKVYIDLNPLLLKD------SVS-QISGWFPIYD  109 (110)
T ss_pred             eCCCCCCCCceEEEEEeHHHhcccC------Ccc-ccCCeEEccc
Confidence            99988 7899999999999998632      111 2366888764

The members of this CD are named after the Human KIAA0528 cDNA clone. All members here contain a single C2 repeat. No other information on this protein is currently known. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/a

>cd04031 C2A_RIM1alpha C2 domain first repeat contained in Rab3-interacting molecule (RIM) proteins

Probab=99.73  E-value=4.6e-17  Score=131.16  Aligned_cols=99  Identities=19%  Similarity=0.269  Sum_probs=81.5

Q ss_pred             ccceEEEEEEEecCCCCCCCCCCCCcEEEEEEecCCCCCCceEEeEecCCCCCCCeeeceEEEEecc-chhccCceEEEE
Q 021949            3 SYRALDLNLISAKHLKDVHLISKMDVYAVVSISGDHTIKKQKVKSHVDRSGGSNPTWNFPIKFTFNQ-SLAQQNRLTLDF   81 (305)
Q Consensus         3 ~~~~L~V~vvsA~dL~~~~~~gk~dpYv~v~l~~~~~~~~~~~kT~v~k~~~~nP~Wne~f~f~v~~-~~~~~~~~~L~v   81 (305)
                      ..+.|.|+|++|++|...+.++..||||+|++.+... ...+.||+++++ +.||+|||+|.|.+.. ..+  ....|.|
T Consensus        14 ~~~~L~V~vi~a~~L~~~~~~~~~dpyv~v~l~~~~~-~~~~~kT~v~~~-t~nP~wne~f~f~~~~~~~l--~~~~l~~   89 (125)
T cd04031          14 VTSQLIVTVLQARDLPPRDDGSLRNPYVKVYLLPDRS-EKSKRRTKTVKK-TLNPEWNQTFEYSNVRRETL--KERTLEV   89 (125)
T ss_pred             CCCEEEEEEEEecCCCCcCCCCCCCCEEEEEEccCCC-ccccccccccCC-CCCCccccEEEEcccCHHHh--CCCEEEE
Confidence            3578999999999999988888999999999976432 136789999887 8999999999998643 222  2358999


Q ss_pred             EEEecCCC-CCcceeEEEEeCcccc
Q 021949           82 KIKSDGLL-GDKTVGEVIVPIKELL  105 (305)
Q Consensus        82 ~V~d~~~~-~d~~IG~~~vpL~~l~  105 (305)
                      +|||++.+ ++++||++.++|.+..
T Consensus        90 ~V~d~~~~~~~~~iG~~~i~l~~~~  114 (125)
T cd04031          90 TVWDYDRDGENDFLGEVVIDLADAL  114 (125)
T ss_pred             EEEeCCCCCCCcEeeEEEEeccccc
Confidence            99999887 7899999999999943

RIMs are believed to organize specialized sites of the plasma membrane called active zones. They also play a role in controlling neurotransmitter release, plasticity processes, as well as memory and learning. RIM contains an N-terminal zinc finger domain, a PDZ domain, and two C-terminal C2 domains (C2A, C2B). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as

>cd04009 C2B_Munc13-like C2 domain second repeat in Munc13 (mammalian uncoordinated)-like proteins

Probab=99.73  E-value=3.4e-17  Score=133.87  Aligned_cols=102  Identities=18%  Similarity=0.293  Sum_probs=85.2

Q ss_pred             cceEEEEEEEecCCCCCCCCCCCCcEEEEEEecCCC-CCCceEEeEecCCCCCCCeeeceEEEEeccchhccCceEEEEE
Q 021949            4 YRALDLNLISAKHLKDVHLISKMDVYAVVSISGDHT-IKKQKVKSHVDRSGGSNPTWNFPIKFTFNQSLAQQNRLTLDFK   82 (305)
Q Consensus         4 ~~~L~V~vvsA~dL~~~~~~gk~dpYv~v~l~~~~~-~~~~~~kT~v~k~~~~nP~Wne~f~f~v~~~~~~~~~~~L~v~   82 (305)
                      ...|+|+|++|++|+..+.+++.||||+|.+..... ....++||+++++ +.||+|||+|.|.+...........|.|+
T Consensus        15 ~~~L~V~Vi~A~~L~~~~~~g~~dPyv~v~l~~~~~~~~~~~~kT~v~~~-t~nP~wnE~f~f~i~~~~~~~~~~~l~~~   93 (133)
T cd04009          15 EQSLRVEILNARNLLPLDSNGSSDPFVKVELLPRHLFPDVPTPKTQVKKK-TLFPLFDESFEFNVPPEQCSVEGALLLFT   93 (133)
T ss_pred             CCEEEEEEEEeeCCCCcCCCCCCCCEEEEEEECCCcCccccccccccCcC-CCCCccCCEEEEEechhhcccCCCEEEEE
Confidence            468999999999999988889999999999975431 0136889999888 79999999999998764333334689999


Q ss_pred             EEecCCC-CCcceeEEEEeCccccc
Q 021949           83 IKSDGLL-GDKTVGEVIVPIKELLD  106 (305)
Q Consensus        83 V~d~~~~-~d~~IG~~~vpL~~l~~  106 (305)
                      |||++.+ +|++||++.|+|++|..
T Consensus        94 V~d~d~~~~d~~iG~~~i~l~~l~~  118 (133)
T cd04009          94 VKDYDLLGSNDFEGEAFLPLNDIPG  118 (133)
T ss_pred             EEecCCCCCCcEeEEEEEeHHHCCc
Confidence            9999888 69999999999999984

C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, s

>cd08386 C2A_Synaptotagmin-7 C2A domain first repeat present in Synaptotagmin 7

Probab=99.72  E-value=8.7e-17  Score=129.70  Aligned_cols=110  Identities=18%  Similarity=0.272  Sum_probs=87.4

Q ss_pred             ccceEEEEEEEecCCCCCCCCCCCCcEEEEEEecCCCCCCceEEeEecCCCCCCCeeeceEEEEeccchhccCceEEEEE
Q 021949            3 SYRALDLNLISAKHLKDVHLISKMDVYAVVSISGDHTIKKQKVKSHVDRSGGSNPTWNFPIKFTFNQSLAQQNRLTLDFK   82 (305)
Q Consensus         3 ~~~~L~V~vvsA~dL~~~~~~gk~dpYv~v~l~~~~~~~~~~~kT~v~k~~~~nP~Wne~f~f~v~~~~~~~~~~~L~v~   82 (305)
                      ...+|+|+|++|++|+..+.+++.||||++.+..+.   ..+.+|+++++ +.||+|||+|.|.+..... .....|+|+
T Consensus        14 ~~~~L~v~v~~a~~L~~~d~~~~~dpyv~v~~~~~~---~~~~kT~v~~~-t~~P~Wne~f~f~~~~~~~-l~~~~l~~~   88 (125)
T cd08386          14 QESTLTLKILKAVELPAKDFSGTSDPFVKIYLLPDK---KHKLETKVKRK-NLNPHWNETFLFEGFPYEK-LQQRVLYLQ   88 (125)
T ss_pred             CCCEEEEEEEEecCCCCccCCCCCCceEEEEECCCC---CcceeeeeecC-CCCCccceeEEEcccCHHH-hCCCEEEEE
Confidence            457899999999999998888899999999996432   35789999887 8999999999998533221 122479999


Q ss_pred             EEecCCC-CCcceeEEEEeCcccccccCCCCCCCCCcceEEEEEee
Q 021949           83 IKSDGLL-GDKTVGEVIVPIKELLDSSSSSSSGDAKSMKFVTYQVR  127 (305)
Q Consensus        83 V~d~~~~-~d~~IG~~~vpL~~l~~~~~~~~~~~g~~~~~~~~~l~  127 (305)
                      |||++.+ ++++||++.|+|.++....          ....|+.|.
T Consensus        89 v~d~d~~~~~~~iG~~~i~l~~l~~~~----------~~~~W~~l~  124 (125)
T cd08386          89 VLDYDRFSRNDPIGEVSLPLNKVDLTE----------EQTFWKDLK  124 (125)
T ss_pred             EEeCCCCcCCcEeeEEEEecccccCCC----------CcceEEecC
Confidence            9999877 7899999999999987533          236677664

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 7, a member of class 2 synaptotagmins, is located in presynaptic plasma membranes in neurons, dense-core vesicles in endocrine cells, and lysosomes in fibroblasts. It has been shown to play a role in regulation of Ca2+-dependent lysosomal exocytosis in fibroblasts and may also function as a vesicular Ca2+-sensor. It is distinguished from the other synaptotagmins by having over 12 splice forms. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic ves

>cd08389 C2A_Synaptotagmin-14_16 C2A domain first repeat present in Synaptotagmins 14 and 16

Probab=99.72  E-value=6e-17  Score=130.93  Aligned_cols=108  Identities=21%  Similarity=0.316  Sum_probs=87.9

Q ss_pred             ccceEEEEEEEecCCCCCCCCCCCCcEEEEEEecCCCCCCceEEeEecCCCCCCCeeeceEEEE-eccchhccCceEEEE
Q 021949            3 SYRALDLNLISAKHLKDVHLISKMDVYAVVSISGDHTIKKQKVKSHVDRSGGSNPTWNFPIKFT-FNQSLAQQNRLTLDF   81 (305)
Q Consensus         3 ~~~~L~V~vvsA~dL~~~~~~gk~dpYv~v~l~~~~~~~~~~~kT~v~k~~~~nP~Wne~f~f~-v~~~~~~~~~~~L~v   81 (305)
                      ....|+|+|++|+||...+..+..|+||++.+....   ..+.||+++++  .||+|||+|.|. +....+  .+..|.|
T Consensus        14 ~~~~L~V~Vi~a~nL~~~~~~~~~d~yVk~~llp~~---~~~~kTkv~~~--~nP~fnE~F~f~~i~~~~l--~~~~L~~   86 (124)
T cd08389          14 SARKLTVTVIRAQDIPTKDRGGASSWQVHLVLLPSK---KQRAKTKVQRG--PNPVFNETFTFSRVEPEEL--NNMALRF   86 (124)
T ss_pred             CCCEEEEEEEEecCCCchhcCCCCCcEEEEEEccCC---cceeecccccC--CCCcccCEEEECCCCHHHh--ccCEEEE
Confidence            457899999999999988877889999998886643   36889998764  899999999998 665443  3468999


Q ss_pred             EEEecCCC-CCcceeEEEEeCcccccccCCCCCCCCCcceEEEEEee
Q 021949           82 KIKSDGLL-GDKTVGEVIVPIKELLDSSSSSSSGDAKSMKFVTYQVR  127 (305)
Q Consensus        82 ~V~d~~~~-~d~~IG~~~vpL~~l~~~~~~~~~~~g~~~~~~~~~l~  127 (305)
                      +|||++.+ ++++||++.|+|+++....          ....||.|.
T Consensus        87 ~V~~~~~~~~~~~lG~~~i~L~~l~~~~----------~~~~w~~L~  123 (124)
T cd08389          87 RLYGVERMRKERLIGEKVVPLSQLNLEG----------ETTVWLTLE  123 (124)
T ss_pred             EEEECCCcccCceEEEEEEeccccCCCC----------CceEEEeCC
Confidence            99999888 7999999999999996432          346777764

Synaptotagmin 14 and 16 are membrane-trafficking proteins in specific tissues outside the brain. Both of these contain C-terminal tandem C2 repeats, but only Synaptotagmin 14 has an N-terminal transmembrane domain and a putative fatty-acylation site. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium and this is indeed the case here. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicle

>cd08390 C2A_Synaptotagmin-15-17 C2A domain first repeat present in Synaptotagmins 15 and 17

Probab=99.71  E-value=1.7e-16  Score=127.62  Aligned_cols=109  Identities=22%  Similarity=0.303  Sum_probs=88.6

Q ss_pred             ccceEEEEEEEecCCCCCC-CCCCCCcEEEEEEecCCCCCCceEEeEecCCCCCCCeeeceEEEEeccchhccCceEEEE
Q 021949            3 SYRALDLNLISAKHLKDVH-LISKMDVYAVVSISGDHTIKKQKVKSHVDRSGGSNPTWNFPIKFTFNQSLAQQNRLTLDF   81 (305)
Q Consensus         3 ~~~~L~V~vvsA~dL~~~~-~~gk~dpYv~v~l~~~~~~~~~~~kT~v~k~~~~nP~Wne~f~f~v~~~~~~~~~~~L~v   81 (305)
                      ..+.|.|+|++|++|+..+ .++..||||++++..+.   ..+.+|+++++ +.||+|||+|.|.+......  ...|.|
T Consensus        12 ~~~~L~V~v~~a~~L~~~~~~~~~~dpyV~v~l~~~~---~~~~~T~v~~~-~~~P~wne~f~f~i~~~~l~--~~~l~i   85 (123)
T cd08390          12 EEEQLTVSLIKARNLPPRTKDVAHCDPFVKVCLLPDE---RRSLQSKVKRK-TQNPNFDETFVFQVSFKELQ--RRTLRL   85 (123)
T ss_pred             CCCEEEEEEEEecCCCCccCCCCCCCcEEEEEEeeCC---CCceEeeeEcC-CCCCccceEEEEEcCHHHhc--ccEEEE
Confidence            4578999999999999887 57889999999986543   35678999887 89999999999998765432  248999


Q ss_pred             EEEecCCC-CCcceeEEEEeCcccccccCCCCCCCCCcceEEEEEee
Q 021949           82 KIKSDGLL-GDKTVGEVIVPIKELLDSSSSSSSGDAKSMKFVTYQVR  127 (305)
Q Consensus        82 ~V~d~~~~-~d~~IG~~~vpL~~l~~~~~~~~~~~g~~~~~~~~~l~  127 (305)
                      +|||.+.. ++++||++.|+|.++....          ....|+.|.
T Consensus        86 ~v~d~~~~~~~~~iG~~~i~L~~l~~~~----------~~~~w~~L~  122 (123)
T cd08390          86 SVYDVDRFSRHCIIGHVLFPLKDLDLVK----------GGVVWRDLE  122 (123)
T ss_pred             EEEECCcCCCCcEEEEEEEeccceecCC----------CceEEEeCC
Confidence            99999887 7899999999999998533          235677764

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. It is thought to be involved in the trafficking and exocytosis of secretory vesicles in non-neuronal tissues and is Ca2+ independent. Human synaptotagmin 15 has 2 alternatively spliced forms that encode proteins with different C-termini. The larger, SYT15a, contains a N-terminal TM region, a putative fatty-acylation site, and 2 tandem C terminal C2 domains. The smaller, SYT15b, lacks the C-terminal portion of the second C2 domain. Unlike most other synaptotagmins it is nearly absent in the brain and rather is found in the heart, lungs, skeletal muscle, and testis. Synaptotagmin 17 is located in the brain, kidney, and prostate and is thought to be a peripheral membrane protein. Previously all synaptotagmins were thought to be calcium sensors in the regulat

>cd04020 C2B_SLP_1-2-3-4 C2 domain second repeat present in Synaptotagmin-like proteins 1-4

Probab=99.70  E-value=1.7e-16  Score=134.21  Aligned_cols=101  Identities=19%  Similarity=0.226  Sum_probs=83.2

Q ss_pred             ccceEEEEEEEecCCCCCCCCCCCCcEEEEEEecCCCCCCceEEeEecCCCCCCCeeeceEEEEeccchhccCceEEEEE
Q 021949            3 SYRALDLNLISAKHLKDVHLISKMDVYAVVSISGDHTIKKQKVKSHVDRSGGSNPTWNFPIKFTFNQSLAQQNRLTLDFK   82 (305)
Q Consensus         3 ~~~~L~V~vvsA~dL~~~~~~gk~dpYv~v~l~~~~~~~~~~~kT~v~k~~~~nP~Wne~f~f~v~~~~~~~~~~~L~v~   82 (305)
                      ..++|+|+|++|++|...+.++..||||+|++..+... ..++||+++++ +.||.|||+|.|.+.... +.....|.|+
T Consensus        25 ~~g~L~V~Vi~A~nL~~~d~~g~~DPYVkv~l~~~~~~-~~~~kT~vi~~-t~nP~WnE~f~f~~~~~~-~l~~~~L~i~  101 (162)
T cd04020          25 STGELHVWVKEAKNLPALKSGGTSDSFVKCYLLPDKSK-KSKQKTPVVKK-SVNPVWNHTFVYDGVSPE-DLSQACLELT  101 (162)
T ss_pred             CCceEEEEEEeeeCCCCCCCCCCCCCEEEEEEEcCCCC-CcceeCCccCC-CCCCCCCCEEEEecCCHH-HhCCCEEEEE
Confidence            45789999999999999888899999999998643321 46889999988 799999999999853221 1123589999


Q ss_pred             EEecCCC-CCcceeEEEEeCccccc
Q 021949           83 IKSDGLL-GDKTVGEVIVPIKELLD  106 (305)
Q Consensus        83 V~d~~~~-~d~~IG~~~vpL~~l~~  106 (305)
                      |||++.+ +|++||++.+.|.++..
T Consensus       102 V~d~d~~~~d~~lG~v~i~l~~~~~  126 (162)
T cd04020         102 VWDHDKLSSNDFLGGVRLGLGTGKS  126 (162)
T ss_pred             EEeCCCCCCCceEEEEEEeCCcccc
Confidence            9999988 69999999999999875

All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. Slp1/JFC1 and Slp2/exophilin 4 promote granule docking to the plasma membrane. Additionally, their C2A domains are both Ca2+ independent, unlike the case in Slp3 and Slp4/granuphilin in which their C2A domains are Ca2+ dependent. It is thought that SHD (except for the Slp4-SHD) functions as a specific Rab27A/B-binding domain. In addition to Slps, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. It has been demonstrated that Slp3 and Slp4/granuphilin promote dense-core vesicle exocytosis. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involvin

>cd04038 C2_ArfGAP C2 domain present in Arf GTPase Activating Proteins (GAP)

Probab=99.70  E-value=3.2e-16  Score=130.07  Aligned_cols=91  Identities=21%  Similarity=0.450  Sum_probs=81.0

Q ss_pred             ceEEEEEEEecCCCCCCCCCCCCcEEEEEEecCCCCCCceEEeEecCCCCCCCeeeceEEEEeccchhccCceEEEEEEE
Q 021949            5 RALDLNLISAKHLKDVHLISKMDVYAVVSISGDHTIKKQKVKSHVDRSGGSNPTWNFPIKFTFNQSLAQQNRLTLDFKIK   84 (305)
Q Consensus         5 ~~L~V~vvsA~dL~~~~~~gk~dpYv~v~l~~~~~~~~~~~kT~v~k~~~~nP~Wne~f~f~v~~~~~~~~~~~L~v~V~   84 (305)
                      +.|+|+|++|++|...+. +++||||++++.+      ++.+|+++++ +.||+|||+|.|.+....     ..|+|+||
T Consensus         2 G~L~V~Vi~a~nL~~~d~-~~sDPYV~v~~g~------~~~kT~vvk~-t~nP~WnE~f~f~i~~~~-----~~l~~~V~   68 (145)
T cd04038           2 GLLKVRVVRGTNLAVRDF-TSSDPYVVLTLGN------QKVKTRVIKK-NLNPVWNEELTLSVPNPM-----APLKLEVF   68 (145)
T ss_pred             eEEEEEEEeeECCCCCCC-CCcCcEEEEEECC------EEEEeeeEcC-CCCCeecccEEEEecCCC-----CEEEEEEE
Confidence            689999999999998776 8899999999965      6899999888 899999999999997652     58999999


Q ss_pred             ecCCC-CCcceeEEEEeCccccccc
Q 021949           85 SDGLL-GDKTVGEVIVPIKELLDSS  108 (305)
Q Consensus        85 d~~~~-~d~~IG~~~vpL~~l~~~~  108 (305)
                      |++.+ .|++||++.++|.+++...
T Consensus        69 D~d~~~~dd~iG~a~i~l~~l~~~~   93 (145)
T cd04038          69 DKDTFSKDDSMGEAEIDLEPLVEAA   93 (145)
T ss_pred             ECCCCCCCCEEEEEEEEHHHhhhhh
Confidence            99988 7899999999999997643

ArfGAP is a GTPase activating protein which regulates the ADP ribosylation factor Arf, a member of the Ras superfamily of GTP-binding proteins. The GTP-bound form of Arf is involved in Golgi morphology and is involved in recruiting coat proteins. ArfGAP is responsible for the GDP-bound form of Arf which is necessary for uncoating the membrane and allowing the Golgi to fuse with an acceptor compartment. These proteins contain an N-terminal ArfGAP domain containing the characteristic zinc finger motif (Cys-x2-Cys-x(16,17)-x2-Cys) and C-terminal C2 domain. C2 domains were first identified in Protein Kinase C (PKC). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances i

>cd04018 C2C_Ferlin C2 domain third repeat in Ferlin

Probab=99.70  E-value=1.8e-16  Score=132.29  Aligned_cols=108  Identities=20%  Similarity=0.289  Sum_probs=85.4

Q ss_pred             eEEEEEEEecCCCCCCCCC--------------CCCcEEEEEEecCCCCCCceEEeEecCCCCCCCeeeceEEEEeccch
Q 021949            6 ALDLNLISAKHLKDVHLIS--------------KMDVYAVVSISGDHTIKKQKVKSHVDRSGGSNPTWNFPIKFTFNQSL   71 (305)
Q Consensus         6 ~L~V~vvsA~dL~~~~~~g--------------k~dpYv~v~l~~~~~~~~~~~kT~v~k~~~~nP~Wne~f~f~v~~~~   71 (305)
                      +|+|+|++|+||...+.++              .+||||+|.+.+      .+.||+++++ +.||+|||+|.|.+....
T Consensus         1 ~~~V~V~~A~dLp~~d~~~~~~~~~~~~~~~~~~~DPYV~V~~~g------~~~kT~v~~~-t~nPvWNE~f~f~v~~p~   73 (151)
T cd04018           1 RFIFKIYRAEDLPQMDSGIMANVKKAFLGEKKELVDPYVEVSFAG------QKVKTSVKKN-SYNPEWNEQIVFPEMFPP   73 (151)
T ss_pred             CeEEEEEEeCCCCccChhhhccceeccccCCCCCcCcEEEEEECC------EeeecceEcC-CCCCCcceEEEEEeeCCC
Confidence            4899999999999877443              689999999986      5679999988 799999999999975433


Q ss_pred             hccCceEEEEEEEecCCC-CCcceeEEEEeCcccccccCCCCCCCCC--cceEEEEEeec
Q 021949           72 AQQNRLTLDFKIKSDGLL-GDKTVGEVIVPIKELLDSSSSSSSGDAK--SMKFVTYQVRS  128 (305)
Q Consensus        72 ~~~~~~~L~v~V~d~~~~-~d~~IG~~~vpL~~l~~~~~~~~~~~g~--~~~~~~~~l~~  128 (305)
                      .   ...|.|+|||++.. +|++||++.|+|.+|....     .++.  .....|+.+..
T Consensus        74 ~---~~~l~~~v~D~d~~~~dd~iG~~~l~l~~l~~~~-----~~~~lp~~~p~W~~lyg  125 (151)
T cd04018          74 L---CERIKIQIRDWDRVGNDDVIGTHFIDLSKISNSG-----DEGFLPTFGPSFVNLYG  125 (151)
T ss_pred             c---CCEEEEEEEECCCCCCCCEEEEEEEeHHHhccCC-----ccccCCccCceEEEeec
Confidence            2   14899999999988 8999999999999997533     1110  12347888864

Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen

>PLN03008 Phospholipase D delta

Probab=99.69  E-value=2.5e-16  Score=158.67  Aligned_cols=125  Identities=19%  Similarity=0.422  Sum_probs=103.5

Q ss_pred             cceEEEEEEEecCCCCCCC------------------------------------------CCCCCcEEEEEEecCCCCC
Q 021949            4 YRALDLNLISAKHLKDVHL------------------------------------------ISKMDVYAVVSISGDHTIK   41 (305)
Q Consensus         4 ~~~L~V~vvsA~dL~~~~~------------------------------------------~gk~dpYv~v~l~~~~~~~   41 (305)
                      +++|+|+|.+|++|.+.++                                          ++++||||+|.+..     
T Consensus        13 hg~l~~~i~ea~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tSDPYV~I~Lg~-----   87 (868)
T PLN03008         13 HGDLDLKIVKARRLPNMDMFSEHLRRLFTACNACARPTDTDDVDPRDKGEFGDKNIRSHRKVITSDPYVTVVVPQ-----   87 (868)
T ss_pred             ecccEEEEEEcccCCchhHHHHHHHhhcccccccccccccccccccccccccccccccccccCCCCceEEEEECC-----
Confidence            6889999999999875211                                          24679999999965     


Q ss_pred             CceEEeEecCCCCCCCeeeceEEEEeccchhccCceEEEEEEEecCCCCCcceeEEEEeCcccccccCCCCCCCCCcceE
Q 021949           42 KQKVKSHVDRSGGSNPTWNFPIKFTFNQSLAQQNRLTLDFKIKSDGLLGDKTVGEVIVPIKELLDSSSSSSSGDAKSMKF  121 (305)
Q Consensus        42 ~~~~kT~v~k~~~~nP~Wne~f~f~v~~~~~~~~~~~L~v~V~d~~~~~d~~IG~~~vpL~~l~~~~~~~~~~~g~~~~~  121 (305)
                      .++.||+|+++ +.||+|||+|.|.|....     ..|+|+|||++.+++++||++.|+|++|....          ...
T Consensus        88 ~rv~RTrVi~n-~~NPvWNE~F~f~vah~~-----s~L~f~VkD~D~~gaD~IG~a~IPL~~L~~Ge----------~vd  151 (868)
T PLN03008         88 ATLARTRVLKN-SQEPLWDEKFNISIAHPF-----AYLEFQVKDDDVFGAQIIGTAKIPVRDIASGE----------RIS  151 (868)
T ss_pred             cceeeEEeCCC-CCCCCcceeEEEEecCCC-----ceEEEEEEcCCccCCceeEEEEEEHHHcCCCC----------ceE
Confidence            35779999987 789999999999997643     48999999999998899999999999998533          347


Q ss_pred             EEEEeecCCCC---CccEEEEEEEEeccCCC
Q 021949          122 VTYQVRSSSGK---PKGELHFSYKFSEPTVG  149 (305)
Q Consensus       122 ~~~~l~~~~g~---~~G~l~lsl~~~~~~~~  149 (305)
                      .|+.|.+.+++   ..++|+|+++|.+...+
T Consensus       152 ~Wl~Ll~~~~kp~k~~~kl~v~lqf~pv~~~  182 (868)
T PLN03008        152 GWFPVLGASGKPPKAETAIFIDMKFTPFDQI  182 (868)
T ss_pred             EEEEccccCCCCCCCCcEEEEEEEEEEcccc
Confidence            89999986654   46899999999997653

>cd08384 C2B_Rabphilin_Doc2 C2 domain second repeat present in Rabphilin and Double C2 domain

Probab=99.69  E-value=9.2e-17  Score=131.08  Aligned_cols=97  Identities=19%  Similarity=0.259  Sum_probs=81.8

Q ss_pred             ccceEEEEEEEecCCCCCCCCCCCCcEEEEEEecCCCCCCceEEeEecCCCCCCCeeeceEEEEeccchhccCceEEEEE
Q 021949            3 SYRALDLNLISAKHLKDVHLISKMDVYAVVSISGDHTIKKQKVKSHVDRSGGSNPTWNFPIKFTFNQSLAQQNRLTLDFK   82 (305)
Q Consensus         3 ~~~~L~V~vvsA~dL~~~~~~gk~dpYv~v~l~~~~~~~~~~~kT~v~k~~~~nP~Wne~f~f~v~~~~~~~~~~~L~v~   82 (305)
                      ..+.|.|+|++|++|...+.++..||||+|.+.++..+ ..+.+|+++++ +.||+|||+|.|.+.....  ....|.|+
T Consensus        11 ~~~~L~V~Vi~a~~L~~~d~~~~~DpyV~v~l~~~~~~-~~~~kT~v~~~-t~nP~wne~f~f~~~~~~l--~~~~l~~~   86 (133)
T cd08384          11 QRRGLIVGIIRCVNLAAMDANGYSDPFVKLYLKPDAGK-KSKHKTQVKKK-TLNPEFNEEFFYDIKHSDL--AKKTLEIT   86 (133)
T ss_pred             CCCEEEEEEEEEcCCCCcCCCCCCCcEEEEEEEcCCCc-cCCceeeeEec-cCCCCcccEEEEECCHHHh--CCCEEEEE
Confidence            35789999999999999888889999999999764322 35789999887 8999999999999876543  23589999


Q ss_pred             EEecCCC-CCcceeEEEEeCcc
Q 021949           83 IKSDGLL-GDKTVGEVIVPIKE  103 (305)
Q Consensus        83 V~d~~~~-~d~~IG~~~vpL~~  103 (305)
                      |||++.. .|++||++.|+|.+
T Consensus        87 V~d~d~~~~~~~lG~~~i~l~~  108 (133)
T cd08384          87 VWDKDIGKSNDYIGGLQLGINA  108 (133)
T ss_pred             EEeCCCCCCccEEEEEEEecCC
Confidence            9999877 78999999999975

Rabphilin is found neurons and in neuroendrocrine cells, while Doc2 is found not only in the brain but in tissues, including mast cells, chromaffin cells, and osteoblasts. Rabphilin and Doc2s share highly homologous tandem C2 domains, although their N-terminal structures are completely different: rabphilin contains an N-terminal Rab-binding domain (RBD),7 whereas Doc2 contains an N-terminal Munc13-1-interacting domain (MID). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domai

>cd04032 C2_Perforin C2 domain of Perforin

Probab=99.69  E-value=2e-16  Score=128.28  Aligned_cols=92  Identities=21%  Similarity=0.261  Sum_probs=78.0

Q ss_pred             ccceEEEEEEEecCCCCCCCCCCCCcEEEEEEecCCCCCCceEEeEecCCCCCCCeeeceEEEEeccchhccCceEEEEE
Q 021949            3 SYRALDLNLISAKHLKDVHLISKMDVYAVVSISGDHTIKKQKVKSHVDRSGGSNPTWNFPIKFTFNQSLAQQNRLTLDFK   82 (305)
Q Consensus         3 ~~~~L~V~vvsA~dL~~~~~~gk~dpYv~v~l~~~~~~~~~~~kT~v~k~~~~nP~Wne~f~f~v~~~~~~~~~~~L~v~   82 (305)
                      ..++|+|+|++|++|.. +.+++.||||+|++.+      .+.||+++++ +.||+|||+|.|.+....   ....|+|+
T Consensus        26 ~~~~L~V~V~~A~~L~~-d~~g~~DPYVkV~~~~------~~~kT~vi~~-t~nPvWNE~F~f~~~~~~---~~~~L~v~   94 (127)
T cd04032          26 GLATLTVTVLRATGLWG-DYFTSTDGYVKVFFGG------QEKRTEVIWN-NNNPRWNATFDFGSVELS---PGGKLRFE   94 (127)
T ss_pred             CcEEEEEEEEECCCCCc-CcCCCCCeEEEEEECC------ccccCceecC-CCCCcCCCEEEEecccCC---CCCEEEEE
Confidence            35789999999999984 6678899999999965      4889999988 799999999999753321   12589999


Q ss_pred             EEecCCC-CCcceeEEEEeCcccc
Q 021949           83 IKSDGLL-GDKTVGEVIVPIKELL  105 (305)
Q Consensus        83 V~d~~~~-~d~~IG~~~vpL~~l~  105 (305)
                      |||++.+ .|++||++.++|....
T Consensus        95 V~D~d~~s~dd~IG~~~i~l~~~~  118 (127)
T cd04032          95 VWDRDNGWDDDLLGTCSVVPEAGV  118 (127)
T ss_pred             EEeCCCCCCCCeeEEEEEEecCCc
Confidence            9999988 8999999999998765

Perforin contains a single copy of a C2 domain in its C-terminus and plays a role in lymphocyte-mediated cytotoxicity. Mutations in perforin leads to familial hemophagocytic lymphohistiocytosis type 2. The function of perforin is calcium dependent and the C2 domain is thought to confer this binding to target cell membranes. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few

>cd08407 C2B_Synaptotagmin-13 C2 domain second repeat present in Synaptotagmin 13

Probab=99.68  E-value=2.4e-16  Score=129.61  Aligned_cols=97  Identities=19%  Similarity=0.288  Sum_probs=81.0

Q ss_pred             ccceEEEEEEEecCCCCCCC--CCCCCcEEEEEEecCCCCCCceEEeEecCCCCCCCeeeceEEEEeccchhccCceEEE
Q 021949            3 SYRALDLNLISAKHLKDVHL--ISKMDVYAVVSISGDHTIKKQKVKSHVDRSGGSNPTWNFPIKFTFNQSLAQQNRLTLD   80 (305)
Q Consensus         3 ~~~~L~V~vvsA~dL~~~~~--~gk~dpYv~v~l~~~~~~~~~~~kT~v~k~~~~nP~Wne~f~f~v~~~~~~~~~~~L~   80 (305)
                      ..++|.|+|++|++|...+.  .+.+||||+|++..+..+ ..+.||+++++ +.||+|||+|.|.|....+  .+..|.
T Consensus        13 ~~~~L~V~V~karnL~~~d~~~~~~~DpYVKv~l~~~~~k-~~kkkT~v~k~-t~nPvfNE~f~F~v~~~~L--~~~~L~   88 (138)
T cd08407          13 AANRLLVVVIKAKNLHSDQLKLLLGIDVSVKVTLKHQNAK-LKKKQTKRAKH-KINPVWNEMIMFELPSELL--AASSVE   88 (138)
T ss_pred             CCCeEEEEEEEecCCCccccCCCCCCCeEEEEEEEcCCcc-cceeccceeeC-CCCCccccEEEEECCHHHh--CccEEE
Confidence            35789999999999998763  345899999999875432 46889999887 8999999999999987654  346899


Q ss_pred             EEEEecCCC-CCcceeEEEEeCcc
Q 021949           81 FKIKSDGLL-GDKTVGEVIVPIKE  103 (305)
Q Consensus        81 v~V~d~~~~-~d~~IG~~~vpL~~  103 (305)
                      |+|||++.+ ++++||++.+.+..
T Consensus        89 ~~V~d~d~~~~~d~iG~v~lg~~~  112 (138)
T cd08407          89 LEVLNQDSPGQSLPLGRCSLGLHT  112 (138)
T ss_pred             EEEEeCCCCcCcceeceEEecCcC
Confidence            999999988 79999999999864

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 13, a member of class 6 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmins 8 and 12, does not have any consensus Ca2+ binding sites. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recy

>cd08406 C2B_Synaptotagmin-12 C2 domain second repeat present in Synaptotagmin 12

Probab=99.68  E-value=2.6e-16  Score=129.26  Aligned_cols=96  Identities=21%  Similarity=0.236  Sum_probs=80.6

Q ss_pred             cceEEEEEEEecCCCCCCCCCCCCcEEEEEEecCCCCCCceEEeEecCCCCCCCeeeceEEEEeccchhccCceEEEEEE
Q 021949            4 YRALDLNLISAKHLKDVHLISKMDVYAVVSISGDHTIKKQKVKSHVDRSGGSNPTWNFPIKFTFNQSLAQQNRLTLDFKI   83 (305)
Q Consensus         4 ~~~L~V~vvsA~dL~~~~~~gk~dpYv~v~l~~~~~~~~~~~kT~v~k~~~~nP~Wne~f~f~v~~~~~~~~~~~L~v~V   83 (305)
                      ..+|.|+|++|++|...+..+.+||||+|++..+..+ ..+.||+++++ +.||+|||+|.|.|....+  .+..|.|+|
T Consensus        14 ~~~L~V~Vi~A~nL~~~~~~g~~DpyVkv~l~~~~~~-~~k~kT~v~k~-t~nP~~nE~f~F~v~~~~l--~~~~l~~~V   89 (136)
T cd08406          14 AERLTVVVVKARNLVWDNGKTTADPFVKVYLLQDGRK-ISKKKTSVKRD-DTNPIFNEAMIFSVPAIVL--QDLSLRVTV   89 (136)
T ss_pred             CCEEEEEEEEeeCCCCccCCCCCCeEEEEEEEeCCcc-ccccCCccccC-CCCCeeceeEEEECCHHHh--CCcEEEEEE
Confidence            4689999999999998887789999999999764322 34778999887 8999999999999977654  346899999


Q ss_pred             EecCCC-CCcceeEEEEeCcc
Q 021949           84 KSDGLL-GDKTVGEVIVPIKE  103 (305)
Q Consensus        84 ~d~~~~-~d~~IG~~~vpL~~  103 (305)
                      ||++.+ ++++||++.|....
T Consensus        90 ~~~d~~~~~~~iG~v~lg~~~  110 (136)
T cd08406          90 AESTEDGKTPNVGHVIIGPAA  110 (136)
T ss_pred             EeCCCCCCCCeeEEEEECCCC
Confidence            999877 88999999997653

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 12, a member of class 6 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmins 8 and 13, do not have any consensus Ca2+ binding sites. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycl

>cd08404 C2B_Synaptotagmin-4 C2 domain second repeat present in Synaptotagmin 4

Probab=99.68  E-value=9.8e-17  Score=131.58  Aligned_cols=97  Identities=19%  Similarity=0.352  Sum_probs=81.5

Q ss_pred             ccceEEEEEEEecCCCCCCCCCCCCcEEEEEEecCCCCCCceEEeEecCCCCCCCeeeceEEEEeccchhccCceEEEEE
Q 021949            3 SYRALDLNLISAKHLKDVHLISKMDVYAVVSISGDHTIKKQKVKSHVDRSGGSNPTWNFPIKFTFNQSLAQQNRLTLDFK   82 (305)
Q Consensus         3 ~~~~L~V~vvsA~dL~~~~~~gk~dpYv~v~l~~~~~~~~~~~kT~v~k~~~~nP~Wne~f~f~v~~~~~~~~~~~L~v~   82 (305)
                      ...+|.|+|++|++|...+.++.+||||+|.+..... ...+.+|+++++ +.||.|||+|.|.+.....  ....|.|+
T Consensus        13 ~~~~L~V~vi~a~~L~~~d~~g~~Dpyv~v~l~~~~~-~~~~~kT~v~k~-t~nP~w~e~F~f~v~~~~~--~~~~l~~~   88 (136)
T cd08404          13 TTNRLTVVVLKARHLPKMDVSGLADPYVKVNLYYGKK-RISKKKTHVKKC-TLNPVFNESFVFDIPSEEL--EDISVEFL   88 (136)
T ss_pred             CCCeEEEEEEEeeCCCccccCCCCCeEEEEEEEcCCc-eeeeEcCccccC-CCCCccCceEEEECCHHHh--CCCEEEEE
Confidence            3568999999999999998889999999999965421 124778998877 8999999999999875543  33589999


Q ss_pred             EEecCCC-CCcceeEEEEeCcc
Q 021949           83 IKSDGLL-GDKTVGEVIVPIKE  103 (305)
Q Consensus        83 V~d~~~~-~d~~IG~~~vpL~~  103 (305)
                      |||++.+ ++++||++.+++.+
T Consensus        89 v~d~d~~~~~~~iG~~~~~~~~  110 (136)
T cd08404          89 VLDSDRVTKNEVIGRLVLGPKA  110 (136)
T ss_pred             EEECCCCCCCccEEEEEECCcC
Confidence            9999988 78999999999988

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 4, a member of class 4 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmin-11, has an Asp to Ser substitution in its C2A domain. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling s

>cd04052 C2B_Tricalbin-like C2 domain second repeat present in Tricalbin-like proteins

Probab=99.68  E-value=3.3e-16  Score=124.08  Aligned_cols=102  Identities=20%  Similarity=0.375  Sum_probs=83.6

Q ss_pred             CCCCCCcEEEEEEecCCCCCCceEEeEecCCCCCCCeeeceEEEEeccchhccCceEEEEEEEecCCCCCcceeEEEEeC
Q 021949           22 LISKMDVYAVVSISGDHTIKKQKVKSHVDRSGGSNPTWNFPIKFTFNQSLAQQNRLTLDFKIKSDGLLGDKTVGEVIVPI  101 (305)
Q Consensus        22 ~~gk~dpYv~v~l~~~~~~~~~~~kT~v~k~~~~nP~Wne~f~f~v~~~~~~~~~~~L~v~V~d~~~~~d~~IG~~~vpL  101 (305)
                      ++|++||||+|.+.+     ....+|+++++ +.||.|||+|.|.+.+..    ...|.|+|||++.++|++||++.|+|
T Consensus         9 ~~G~~dPYv~v~v~~-----~~~~kT~v~~~-t~nP~Wne~f~f~v~~~~----~~~l~i~v~d~~~~~d~~iG~~~v~L   78 (111)
T cd04052           9 KTGLLSPYAELYLNG-----KLVYTTRVKKK-TNNPSWNASTEFLVTDRR----KSRVTVVVKDDRDRHDPVLGSVSISL   78 (111)
T ss_pred             cCCCCCceEEEEECC-----EEEEEEeeecc-CCCCccCCceEEEecCcC----CCEEEEEEEECCCCCCCeEEEEEecH
Confidence            468899999999975     25678998777 799999999999986542    25799999999888889999999999


Q ss_pred             cccccccCCCCCCCCCcceEEEEEeecCCCCCccEEEEEEEEec
Q 021949          102 KELLDSSSSSSSGDAKSMKFVTYQVRSSSGKPKGELHFSYKFSE  145 (305)
Q Consensus       102 ~~l~~~~~~~~~~~g~~~~~~~~~l~~~~g~~~G~l~lsl~~~~  145 (305)
                      .++....    .     ....||.|..   +.+|+|+|+++|.+
T Consensus        79 ~~l~~~~----~-----~~~~w~~L~~---~~~G~i~~~~~~~p  110 (111)
T cd04052          79 NDLIDAT----S-----VGQQWFPLSG---NGQGRIRISALWKP  110 (111)
T ss_pred             HHHHhhh----h-----ccceeEECCC---CCCCEEEEEEEEec
Confidence            9997533    1     2357888863   57899999999986

5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain.

>cd08675 C2B_RasGAP C2 domain second repeat of Ras GTPase activating proteins (GAPs)

Probab=99.68  E-value=3.5e-16  Score=128.70  Aligned_cols=110  Identities=17%  Similarity=0.339  Sum_probs=88.6

Q ss_pred             EEEEEEEecCCCCCCCCCCCCcEEEEEEecCCCCCCceEEeEecCCCCCCCeeeceEEEEeccchh-----------ccC
Q 021949            7 LDLNLISAKHLKDVHLISKMDVYAVVSISGDHTIKKQKVKSHVDRSGGSNPTWNFPIKFTFNQSLA-----------QQN   75 (305)
Q Consensus         7 L~V~vvsA~dL~~~~~~gk~dpYv~v~l~~~~~~~~~~~kT~v~k~~~~nP~Wne~f~f~v~~~~~-----------~~~   75 (305)
                      |+|+|++|++|... .+++.||||+|++....  ...+.+|+++++ +.||.|||+|.|.+.....           ...
T Consensus         1 L~V~Vi~A~~L~~~-~~g~~dPyv~v~~~~~~--~~~~~rT~vv~~-t~nP~Wne~f~f~~~~~~~~~~~~~~~~~~~~~   76 (137)
T cd08675           1 LSVRVLECRDLALK-SNGTCDPFARVTLNYSS--KTDTKRTKVKKK-TNNPRFDEAFYFELTIGFSYEKKSFKVEEEDLE   76 (137)
T ss_pred             CEEEEEEccCCCcc-cCCCCCcEEEEEEecCC--cCCeeccceeeC-CCCCCcceEEEEEcccccccccccccccccccc
Confidence            68999999999988 77899999999998431  136889999887 8999999999999876521           112


Q ss_pred             ceEEEEEEEecCCC-CCcceeEEEEeCcccccccCCCCCCCCCcceEEEEEeecCC
Q 021949           76 RLTLDFKIKSDGLL-GDKTVGEVIVPIKELLDSSSSSSSGDAKSMKFVTYQVRSSS  130 (305)
Q Consensus        76 ~~~L~v~V~d~~~~-~d~~IG~~~vpL~~l~~~~~~~~~~~g~~~~~~~~~l~~~~  130 (305)
                      ...|.|+|||++.+ +++|||++.|+|.++....          ....||.|...+
T Consensus        77 ~~~l~i~V~d~~~~~~~~~IG~~~i~l~~l~~~~----------~~~~W~~L~~~~  122 (137)
T cd08675          77 KSELRVELWHASMVSGDDFLGEVRIPLQGLQQAG----------SHQAWYFLQPRE  122 (137)
T ss_pred             ccEEEEEEEcCCcCcCCcEEEEEEEehhhccCCC----------cccceEecCCcC
Confidence            35899999999988 8999999999999987433          246788888643

RasGAPs suppress Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. The proteins here all contain two tandem C2 domains, a Ras-GAP domain, and a pleckstrin homology (PH)-like domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin

>cd08408 C2B_Synaptotagmin-14_16 C2 domain second repeat present in Synaptotagmins 14 and 16

Probab=99.68  E-value=4e-16  Score=128.47  Aligned_cols=99  Identities=14%  Similarity=0.245  Sum_probs=82.7

Q ss_pred             ccceEEEEEEEecCCCCCCCCCCCCcEEEEEEecCCCCCCceEEeEecCCCCCCCeeeceEEEEeccchhccCceEEEEE
Q 021949            3 SYRALDLNLISAKHLKDVHLISKMDVYAVVSISGDHTIKKQKVKSHVDRSGGSNPTWNFPIKFTFNQSLAQQNRLTLDFK   82 (305)
Q Consensus         3 ~~~~L~V~vvsA~dL~~~~~~gk~dpYv~v~l~~~~~~~~~~~kT~v~k~~~~nP~Wne~f~f~v~~~~~~~~~~~L~v~   82 (305)
                      ..++|.|+|++|++|...+..+..||||++.+..+..+...++||+++++ +.||+|||+|.|.|....+  .+..|.|+
T Consensus        13 ~~~~L~V~VikarnL~~~~~~~~~dpyVkv~llp~~~~~~~~~kT~v~~~-t~nPvfnEtF~f~i~~~~l--~~~~L~~~   89 (138)
T cd08408          13 LTGRLSVEVIKGSNFKNLAMNKAPDTYVKLTLLNSDGQEISKSKTSIRRG-QPDPEFKETFVFQVALFQL--SEVTLMFS   89 (138)
T ss_pred             CCCeEEEEEEEecCCCccccCCCCCeeEEEEEEeCCCcceeeccceeecC-CCCCcEeeeEEEECCHHHh--CccEEEEE
Confidence            45789999999999999888889999999999764322234679999887 8999999999999976544  34689999


Q ss_pred             EEecCCC-CCcceeEEEEeCccc
Q 021949           83 IKSDGLL-GDKTVGEVIVPIKEL  104 (305)
Q Consensus        83 V~d~~~~-~d~~IG~~~vpL~~l  104 (305)
                      |||.+.+ ++++||++.|.+...
T Consensus        90 V~~~~~~~~~~~iG~v~l~~~~~  112 (138)
T cd08408          90 VYNKRKMKRKEMIGWFSLGLNSS  112 (138)
T ss_pred             EEECCCCCCCcEEEEEEECCcCC
Confidence            9999877 889999999987754

Synaptotagmin 14 and 16 are membrane-trafficking proteins in specific tissues outside the brain. Both of these contain C-terminal tandem C2 repeats, but only Synaptotagmin 14 has an N-terminal transmembrane domain and a putative fatty-acylation site. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium and this is indeed the case here. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicle

>cd08383 C2A_RasGAP C2 domain (first repeat) of Ras GTPase activating proteins (GAPs)

Probab=99.67  E-value=1.1e-15  Score=121.69  Aligned_cols=113  Identities=20%  Similarity=0.277  Sum_probs=84.9

Q ss_pred             EEEEEEEecCCCCCCCCCCCCcEEEEEEecCCCCCCceEEeEecCCCCCCCeeeceEEEEeccchhccCceEEEEEEEec
Q 021949            7 LDLNLISAKHLKDVHLISKMDVYAVVSISGDHTIKKQKVKSHVDRSGGSNPTWNFPIKFTFNQSLAQQNRLTLDFKIKSD   86 (305)
Q Consensus         7 L~V~vvsA~dL~~~~~~gk~dpYv~v~l~~~~~~~~~~~kT~v~k~~~~nP~Wne~f~f~v~~~~~~~~~~~L~v~V~d~   86 (305)
                      |+|+|++|++|+..   +.+||||++++.+     ..+.+|+++++  .||+|||+|.|.+.....  ....|.|.+||.
T Consensus         2 L~v~vi~a~~l~~~---~~~dpyv~v~~~~-----~~~~kT~~~~~--~~P~Wne~f~f~v~~~~~--~~~~l~i~v~d~   69 (117)
T cd08383           2 LRLRILEAKNLPSK---GTRDPYCTVSLDQ-----VEVARTKTVEK--LNPFWGEEFVFDDPPPDV--TFFTLSFYNKDK   69 (117)
T ss_pred             eEEEEEEecCCCcC---CCCCceEEEEECC-----EEeEecceEEC--CCCcccceEEEecCCccc--cEEEEEEEEEec
Confidence            88999999999876   7899999999975     24678998765  899999999999976432  225788999998


Q ss_pred             CCC-CCcceeEEEEeCcccccccCCCCCCCCCcceEEEEEeecC--CCCCccEEEEEEEE
Q 021949           87 GLL-GDKTVGEVIVPIKELLDSSSSSSSGDAKSMKFVTYQVRSS--SGKPKGELHFSYKF  143 (305)
Q Consensus        87 ~~~-~d~~IG~~~vpL~~l~~~~~~~~~~~g~~~~~~~~~l~~~--~g~~~G~l~lsl~~  143 (305)
                      +.. .+.++|.+.  |.++....          ....||.|...  ..+..|+|+|+++|
T Consensus        70 ~~~~~~~~~g~v~--l~~~~~~~----------~~~~w~~L~~~~~~~~~~G~l~l~~~~  117 (117)
T cd08383          70 RSKDRDIVIGKVA--LSKLDLGQ----------GKDEWFPLTPVDPDSEVQGSVRLRARY  117 (117)
T ss_pred             ccCCCeeEEEEEE--ecCcCCCC----------cceeEEECccCCCCCCcCceEEEEEEC
Confidence            766 455566654  44544322          24678888753  34578999999976

RasGAPs suppress Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. The proteins here all contain either a single C2 domain or two tandem C2 domains, a Ras-GAP domain, and a pleckstrin homology (PH)-like domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2

>cd04026 C2_PKC_alpha_gamma C2 domain in Protein Kinase C (PKC) alpha and gamma

Probab=99.67  E-value=7.5e-16  Score=125.37  Aligned_cols=108  Identities=18%  Similarity=0.212  Sum_probs=89.4

Q ss_pred             ceEEEEEEEecCCCCCCCCCCCCcEEEEEEecCCCCCCceEEeEecCCCCCCCeeeceEEEEeccchhccCceEEEEEEE
Q 021949            5 RALDLNLISAKHLKDVHLISKMDVYAVVSISGDHTIKKQKVKSHVDRSGGSNPTWNFPIKFTFNQSLAQQNRLTLDFKIK   84 (305)
Q Consensus         5 ~~L~V~vvsA~dL~~~~~~gk~dpYv~v~l~~~~~~~~~~~kT~v~k~~~~nP~Wne~f~f~v~~~~~~~~~~~L~v~V~   84 (305)
                      ++|.|+|++|++|...+..+..||||+|.+.+...+ ..+.+|+++++ +.||.|||+|.|.+.....   ...|.|+||
T Consensus        13 ~~l~v~i~~a~nL~~~~~~~~~dpyv~v~~~~~~~~-~~~~rT~v~~~-~~~P~wne~f~~~~~~~~~---~~~l~v~v~   87 (131)
T cd04026          13 NKLTVEVREAKNLIPMDPNGLSDPYVKLKLIPDPKN-ETKQKTKTIKK-TLNPVWNETFTFDLKPADK---DRRLSIEVW   87 (131)
T ss_pred             CEEEEEEEEeeCCCCcCCCCCCCCcEEEEEEcCCCC-CceecceeecC-CCCCCccceEEEeCCchhc---CCEEEEEEE
Confidence            679999999999998877788999999999753321 36889999887 7999999999999865431   248999999


Q ss_pred             ecCCC-CCcceeEEEEeCcccccccCCCCCCCCCcceEEEEEeec
Q 021949           85 SDGLL-GDKTVGEVIVPIKELLDSSSSSSSGDAKSMKFVTYQVRS  128 (305)
Q Consensus        85 d~~~~-~d~~IG~~~vpL~~l~~~~~~~~~~~g~~~~~~~~~l~~  128 (305)
                      |++.+ .+++||++.++|.++....           ...||.|.+
T Consensus        88 d~~~~~~~~~iG~~~~~l~~l~~~~-----------~~~w~~L~~  121 (131)
T cd04026          88 DWDRTTRNDFMGSLSFGVSELIKMP-----------VDGWYKLLN  121 (131)
T ss_pred             ECCCCCCcceeEEEEEeHHHhCcCc-----------cCceEECcC
Confidence            99877 7899999999999998422           367898876

A single C2 domain is found in PKC alpha and gamma. The PKC family of serine/threonine kinases regulates apoptosis, proliferation, migration, motility, chemo-resistance, and differentiation. There are 3 groups: group 1(alpha, betaI, beta II, gamma) which require phospholipids and calcium, group 2 (delta, epsilon, theta, eta) which do not require calcium for activation, and group 3 (xi, iota/lambda) which are atypical and can be activated in the absence of diacylglycerol and calcium. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transd

>cd04035 C2A_Rabphilin_Doc2 C2 domain first repeat present in Rabphilin and Double C2 domain

Probab=99.67  E-value=1.3e-15  Score=122.62  Aligned_cols=102  Identities=23%  Similarity=0.357  Sum_probs=82.9

Q ss_pred             ccceEEEEEEEecCCCCCCCCCCCCcEEEEEEecCCCCCCceEEeEecCCCCCCCeeeceEEEE-eccchhccCceEEEE
Q 021949            3 SYRALDLNLISAKHLKDVHLISKMDVYAVVSISGDHTIKKQKVKSHVDRSGGSNPTWNFPIKFT-FNQSLAQQNRLTLDF   81 (305)
Q Consensus         3 ~~~~L~V~vvsA~dL~~~~~~gk~dpYv~v~l~~~~~~~~~~~kT~v~k~~~~nP~Wne~f~f~-v~~~~~~~~~~~L~v   81 (305)
                      ..++|+|+|++|++|.+.+.++..||||++.+..... ...+.+|+++++ +.||.|||+|.|. +.....  .+..|.|
T Consensus        13 ~~~~L~V~v~~a~~L~~~~~~~~~dpyv~v~~~~~~~-~~~~~rT~v~~~-~~~P~Wne~f~f~~~~~~~~--~~~~l~~   88 (123)
T cd04035          13 ANSALHCTIIRAKGLKAMDANGLSDPYVKLNLLPGAS-KATKLRTKTVHK-TRNPEFNETLTYYGITEEDI--QRKTLRL   88 (123)
T ss_pred             CCCEEEEEEEEeeCCCCCCCCCCCCceEEEEEecCCC-CCCceeeeeecC-CCCCCccceEEEcCCCHHHh--CCCEEEE
Confidence            3578999999999999888888999999999864322 246889999887 7999999999996 432221  2358999


Q ss_pred             EEEecCCCCCcceeEEEEeCccccccc
Q 021949           82 KIKSDGLLGDKTVGEVIVPIKELLDSS  108 (305)
Q Consensus        82 ~V~d~~~~~d~~IG~~~vpL~~l~~~~  108 (305)
                      +|||++.+++++||++.++|.+|..+.
T Consensus        89 ~v~d~~~~~~~~iG~~~i~l~~l~~~~  115 (123)
T cd04035          89 LVLDEDRFGNDFLGETRIPLKKLKPNQ  115 (123)
T ss_pred             EEEEcCCcCCeeEEEEEEEcccCCCCc
Confidence            999998778889999999999998543

Rabphilin is found neurons and in neuroendrocrine cells, while Doc2 is found not only in the brain but in tissues, including mast cells, chromaffin cells, and osteoblasts. Rabphilin and Doc2s share highly homologous tandem C2 domains, although their N-terminal structures are completely different: rabphilin contains an N-terminal Rab-binding domain (RBD),7 whereas Doc2 contains an N-terminal Munc13-1-interacting domain (MID). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain

>cd08402 C2B_Synaptotagmin-1 C2 domain second repeat present in Synaptotagmin 1

Probab=99.66  E-value=6.6e-16  Score=126.63  Aligned_cols=98  Identities=16%  Similarity=0.277  Sum_probs=80.8

Q ss_pred             ccceEEEEEEEecCCCCCCCCCCCCcEEEEEEecCCCCCCceEEeEecCCCCCCCeeeceEEEEeccchhccCceEEEEE
Q 021949            3 SYRALDLNLISAKHLKDVHLISKMDVYAVVSISGDHTIKKQKVKSHVDRSGGSNPTWNFPIKFTFNQSLAQQNRLTLDFK   82 (305)
Q Consensus         3 ~~~~L~V~vvsA~dL~~~~~~gk~dpYv~v~l~~~~~~~~~~~kT~v~k~~~~nP~Wne~f~f~v~~~~~~~~~~~L~v~   82 (305)
                      ..++|+|+|++|++|...+.+++.||||+|.+..... ...+++|+++++ +.||.|||+|.|.+....+  ....|.|+
T Consensus        13 ~~~~l~V~Vi~a~~L~~~d~~g~~dpyv~v~l~~~~~-~~~~~kT~v~~~-t~nP~wne~f~f~i~~~~l--~~~~l~~~   88 (136)
T cd08402          13 TAGKLTVVILEAKNLKKMDVGGLSDPYVKIHLMQNGK-RLKKKKTTIKKR-TLNPYYNESFSFEVPFEQI--QKVHLIVT   88 (136)
T ss_pred             CCCeEEEEEEEeeCCCcccCCCCCCCeEEEEEEECCc-ccceeeccceeC-CCCCcccceEEEECCHHHh--CCCEEEEE
Confidence            4578999999999999988889999999999964321 135678988777 8999999999999865443  23589999


Q ss_pred             EEecCCC-CCcceeEEEEeCccc
Q 021949           83 IKSDGLL-GDKTVGEVIVPIKEL  104 (305)
Q Consensus        83 V~d~~~~-~d~~IG~~~vpL~~l  104 (305)
                      |||++.+ +|++||++.|++...
T Consensus        89 v~d~~~~~~~~~iG~~~i~~~~~  111 (136)
T cd08402          89 VLDYDRIGKNDPIGKVVLGCNAT  111 (136)
T ss_pred             EEeCCCCCCCceeEEEEECCccC
Confidence            9999988 789999999998763

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 1, a member of the class 1 synaptotagmins, is located in the brain and endocranium and localized to the synaptic vesicles and secretory granules. It functions as a Ca2+ sensor for fast exocytosis. It, like synaptotagmin-2, has an N-glycosylated N-terminus. Synaptotagmin 4, a member of class 4 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmin-11, has an Asp to Ser substitution in its C2A domain. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are:

>cd08676 C2A_Munc13-like C2 domain first repeat in Munc13 (mammalian uncoordinated)-like proteins

Probab=99.66  E-value=6.3e-16  Score=129.23  Aligned_cols=96  Identities=24%  Similarity=0.318  Sum_probs=79.6

Q ss_pred             ccceEEEEEEEecCCCCCCCCCCCCcEEEEEEecCCCC-----------------------CCceEEeEecCCCCCCCee
Q 021949            3 SYRALDLNLISAKHLKDVHLISKMDVYAVVSISGDHTI-----------------------KKQKVKSHVDRSGGSNPTW   59 (305)
Q Consensus         3 ~~~~L~V~vvsA~dL~~~~~~gk~dpYv~v~l~~~~~~-----------------------~~~~~kT~v~k~~~~nP~W   59 (305)
                      ....|+|+|++|++|...+.++++||||+|.+......                       .....+|+++++ +.||+|
T Consensus        26 ~~~~L~V~vi~a~~L~~~d~~g~~DPyv~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kT~v~~~-tlnP~W  104 (153)
T cd08676          26 PIFVLKVTVIEAKGLLAKDVNGFSDPYCMLGIVPASRERNSEKSKKRKSHRKKAVLKDTVPAKSIKVTEVKPQ-TLNPVW  104 (153)
T ss_pred             CeEEEEEEEEeccCCcccCCCCCCCceEEEEEcccccccccccccccccccccccccccccccccEecceecC-CCCCcc
Confidence            46789999999999999998899999999998643110                       013578999887 899999


Q ss_pred             eceEEEEeccchhccCceEEEEEEEecCCCCCcceeEEEEeCccccc
Q 021949           60 NFPIKFTFNQSLAQQNRLTLDFKIKSDGLLGDKTVGEVIVPIKELLD  106 (305)
Q Consensus        60 ne~f~f~v~~~~~~~~~~~L~v~V~d~~~~~d~~IG~~~vpL~~l~~  106 (305)
                      ||+|.|.+....    ...|.|+|||++   +++||++.|+|.++..
T Consensus       105 nE~F~f~v~~~~----~~~L~i~V~D~d---d~~IG~v~i~l~~l~~  144 (153)
T cd08676         105 NETFRFEVEDVS----NDQLHLDIWDHD---DDFLGCVNIPLKDLPS  144 (153)
T ss_pred             ccEEEEEeccCC----CCEEEEEEEecC---CCeEEEEEEEHHHhCC
Confidence            999999996532    258999999987   8899999999999983

C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, sy

>cd04037 C2E_Ferlin C2 domain fifth repeat in Ferlin

Probab=99.66  E-value=3.7e-16  Score=126.31  Aligned_cols=92  Identities=15%  Similarity=0.232  Sum_probs=78.4

Q ss_pred             eEEEEEEEecCCCCCCCCCCCCcEEEEEEecCCCCCCceEEeEecCCCCCCCeeeceEEEEeccchhccCceEEEEEEEe
Q 021949            6 ALDLNLISAKHLKDVHLISKMDVYAVVSISGDHTIKKQKVKSHVDRSGGSNPTWNFPIKFTFNQSLAQQNRLTLDFKIKS   85 (305)
Q Consensus         6 ~L~V~vvsA~dL~~~~~~gk~dpYv~v~l~~~~~~~~~~~kT~v~k~~~~nP~Wne~f~f~v~~~~~~~~~~~L~v~V~d   85 (305)
                      .|+|+|++|++|...+.+++.||||+|++.+.    ..+.||+++++ +.||+|||+|.|.+....    ...|.|+|||
T Consensus         1 ~lrV~Vi~a~~L~~~d~~g~~DPYv~v~~~~~----~~~~kT~~v~~-t~nP~Wne~f~f~~~~~~----~~~L~~~V~d   71 (124)
T cd04037           1 LVRVYVVRARNLQPKDPNGKSDPYLKIKLGKK----KINDRDNYIPN-TLNPVFGKMFELEATLPG----NSILKISVMD   71 (124)
T ss_pred             CEEEEEEECcCCCCCCCCCCCCcEEEEEECCe----eccceeeEEEC-CCCCccceEEEEEecCCC----CCEEEEEEEE
Confidence            48999999999999998899999999999763    24467888777 899999999999875432    2589999999


Q ss_pred             cCCC-CCcceeEEEEeCccccc
Q 021949           86 DGLL-GDKTVGEVIVPIKELLD  106 (305)
Q Consensus        86 ~~~~-~d~~IG~~~vpL~~l~~  106 (305)
                      ++.+ .|++||++.|+|++...
T Consensus        72 ~d~~~~dd~iG~~~i~l~~~~~   93 (124)
T cd04037          72 YDLLGSDDLIGETVIDLEDRFF   93 (124)
T ss_pred             CCCCCCCceeEEEEEeeccccc
Confidence            9988 89999999999998774

Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen

>cd08405 C2B_Synaptotagmin-7 C2 domain second repeat present in Synaptotagmin 7

Probab=99.66  E-value=6.4e-16  Score=126.68  Aligned_cols=98  Identities=19%  Similarity=0.284  Sum_probs=80.9

Q ss_pred             ccceEEEEEEEecCCCCCCCCCCCCcEEEEEEecCCCCCCceEEeEecCCCCCCCeeeceEEEEeccchhccCceEEEEE
Q 021949            3 SYRALDLNLISAKHLKDVHLISKMDVYAVVSISGDHTIKKQKVKSHVDRSGGSNPTWNFPIKFTFNQSLAQQNRLTLDFK   82 (305)
Q Consensus         3 ~~~~L~V~vvsA~dL~~~~~~gk~dpYv~v~l~~~~~~~~~~~kT~v~k~~~~nP~Wne~f~f~v~~~~~~~~~~~L~v~   82 (305)
                      ..++|+|+|++|++|...+.+++.||||+|.+..... ...+.+|+++++ +.||.|||+|.|.+......  ...|.|+
T Consensus        13 ~~~~L~v~vi~a~~L~~~~~~g~~dpyV~v~l~~~~~-~~~~~kT~v~~~-t~~P~wne~F~f~i~~~~~~--~~~l~~~   88 (136)
T cd08405          13 TANRITVNIIKARNLKAMDINGTSDPYVKVWLMYKDK-RVEKKKTVIKKR-TLNPVFNESFIFNIPLERLR--ETTLIIT   88 (136)
T ss_pred             CCCeEEEEEEEeeCCCccccCCCCCceEEEEEEeCCC-ccccccCcceeC-CCCCcccceEEEeCCHHHhC--CCEEEEE
Confidence            3578999999999999888889999999999853221 135778999887 79999999999998654322  2589999


Q ss_pred             EEecCCC-CCcceeEEEEeCccc
Q 021949           83 IKSDGLL-GDKTVGEVIVPIKEL  104 (305)
Q Consensus        83 V~d~~~~-~d~~IG~~~vpL~~l  104 (305)
                      |||++.+ .|++||++.|++.+.
T Consensus        89 v~d~~~~~~~~~lG~~~i~~~~~  111 (136)
T cd08405          89 VMDKDRLSRNDLIGKIYLGWKSG  111 (136)
T ss_pred             EEECCCCCCCcEeEEEEECCccC
Confidence            9999888 789999999999875

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 7, a member of class 2 synaptotagmins, is located in presynaptic plasma membranes in neurons, dense-core vesicles in endocrine cells, and lysosomes in fibroblasts. It has been shown to play a role in regulation of Ca2+-dependent lysosomal exocytosis in fibroblasts and may also function as a vesicular Ca2+-sensor. It is distinguished from the other synaptotagmins by having over 12 splice forms. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic ves

>cd04048 C2A_Copine C2 domain first repeat in Copine

Probab=99.66  E-value=1.9e-15  Score=121.24  Aligned_cols=103  Identities=19%  Similarity=0.240  Sum_probs=82.8

Q ss_pred             EEEEecCCCCCCCCCCCCcEEEEEEecCC-CCCCceEEeEecCCCCCCCeeeceEEEEeccchhccCceEEEEEEEecCC
Q 021949           10 NLISAKHLKDVHLISKMDVYAVVSISGDH-TIKKQKVKSHVDRSGGSNPTWNFPIKFTFNQSLAQQNRLTLDFKIKSDGL   88 (305)
Q Consensus        10 ~vvsA~dL~~~~~~gk~dpYv~v~l~~~~-~~~~~~~kT~v~k~~~~nP~Wne~f~f~v~~~~~~~~~~~L~v~V~d~~~   88 (305)
                      ..++|++|...+.++++||||+|++.+.. ..+..+.+|+++++ +.||+|||+|.|.+.....    ..|.|+|||++.
T Consensus         5 ~~i~a~~L~~~d~~g~~DPyv~v~~~~~~~~~~~~~~kT~vi~~-t~nP~wne~f~f~~~~~~~----~~l~~~V~d~d~   79 (120)
T cd04048           5 LSISCRNLLDKDVLSKSDPFVVVYVKTGGSGQWVEIGRTEVIKN-NLNPDFVTTFTVDYYFEEV----QKLRFEVYDVDS   79 (120)
T ss_pred             EEEEccCCCCCCCCCCCCcEEEEEEEcCCCCceEEeccEeEeCC-CCCCCceEEEEEEEEeEee----eEEEEEEEEecC
Confidence            45899999999989999999999998753 12235789999988 8999999999998653322    479999999986


Q ss_pred             ----C-CCcceeEEEEeCcccccccCCCCCCCCCcceEEEEEee
Q 021949           89 ----L-GDKTVGEVIVPIKELLDSSSSSSSGDAKSMKFVTYQVR  127 (305)
Q Consensus        89 ----~-~d~~IG~~~vpL~~l~~~~~~~~~~~g~~~~~~~~~l~  127 (305)
                          + +|++||++.++|.+|+...          ....++.|.
T Consensus        80 ~~~~~~~~d~iG~~~i~l~~l~~~~----------~~~~~~~l~  113 (120)
T cd04048          80 KSKDLSDHDFLGEAECTLGEIVSSP----------GQKLTLPLK  113 (120)
T ss_pred             CcCCCCCCcEEEEEEEEHHHHhcCC----------CcEEEEEcc
Confidence                5 8899999999999998533          135677774

There are 2 copies of the C2 domain present in copine, a protein involved in membrane trafficking, protein-protein interactions, and perhaps even cell division and growth. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 doma

>cd08403 C2B_Synaptotagmin-3-5-6-9-10 C2 domain second repeat present in Synaptotagmins 3, 5, 6, 9, and 10

Probab=99.65  E-value=9.8e-16  Score=125.28  Aligned_cols=96  Identities=22%  Similarity=0.285  Sum_probs=79.7

Q ss_pred             ccceEEEEEEEecCCCCCCCCCCCCcEEEEEEecCCCCCCceEEeEecCCCCCCCeeeceEEEEeccchhccCceEEEEE
Q 021949            3 SYRALDLNLISAKHLKDVHLISKMDVYAVVSISGDHTIKKQKVKSHVDRSGGSNPTWNFPIKFTFNQSLAQQNRLTLDFK   82 (305)
Q Consensus         3 ~~~~L~V~vvsA~dL~~~~~~gk~dpYv~v~l~~~~~~~~~~~kT~v~k~~~~nP~Wne~f~f~v~~~~~~~~~~~L~v~   82 (305)
                      ..++|+|+|++|++|...+.++++||||+|.+.....+ ..+.+|+++++ +.||+|||+|.|.+......  ...|.|+
T Consensus        12 ~~~~L~V~v~~A~~L~~~d~~g~~dpyvkv~l~~~~~~-~~~~kT~v~~~-t~nP~wne~f~f~i~~~~~~--~~~l~~~   87 (134)
T cd08403          12 TAGRLTLTIIKARNLKAMDITGFSDPYVKVSLMCEGRR-LKKKKTSVKKN-TLNPTYNEALVFDVPPENVD--NVSLIIA   87 (134)
T ss_pred             CCCEEEEEEEEeeCCCccccCCCCCceEEEEEEeCCcc-cceecCCcccC-CCCCcccceEEEECCHHHhC--CCEEEEE
Confidence            45789999999999999998899999999998643211 35778988766 89999999999998655432  2479999


Q ss_pred             EEecCCC-CCcceeEEEEeCc
Q 021949           83 IKSDGLL-GDKTVGEVIVPIK  102 (305)
Q Consensus        83 V~d~~~~-~d~~IG~~~vpL~  102 (305)
                      |||++.+ ++++||++.|++.
T Consensus        88 v~d~~~~~~~~~IG~~~l~~~  108 (134)
T cd08403          88 VVDYDRVGHNELIGVCRVGPN  108 (134)
T ss_pred             EEECCCCCCCceeEEEEECCC
Confidence            9999988 7899999999876

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 3, a member of class 3 synaptotagmins, is located in the brain and localized to the active zone and plasma membrane. It functions as a Ca2+ sensor for fast exocytosis. It, along with synaptotagmins 5,6, and 10, has disulfide bonds at its N-terminus. Synaptotagmin 9, a class 5 synaptotagmins, is located in the brain and localized to the synaptic vesicles. It is thought to be a Ca2+-sensor for dense-core vesicle exocytosis. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind

>cd04013 C2_SynGAP_like C2 domain present in Ras GTPase activating protein (GAP) family

Probab=99.65  E-value=4.3e-15  Score=123.03  Aligned_cols=117  Identities=13%  Similarity=0.238  Sum_probs=92.5

Q ss_pred             ceEEEEEEEecCCCCCCCCCCCCcEEEEEEecCCCCCCceEEeEecCCCCCCCeeeceEEEEeccchhccCceEEEEEEE
Q 021949            5 RALDLNLISAKHLKDVHLISKMDVYAVVSISGDHTIKKQKVKSHVDRSGGSNPTWNFPIKFTFNQSLAQQNRLTLDFKIK   84 (305)
Q Consensus         5 ~~L~V~vvsA~dL~~~~~~gk~dpYv~v~l~~~~~~~~~~~kT~v~k~~~~nP~Wne~f~f~v~~~~~~~~~~~L~v~V~   84 (305)
                      ..|.|.|++|++|...     -++||+|.+++     ....||+++.+ +.||.|+|+|.|......     ..|.|.||
T Consensus        11 ~sL~v~V~EAk~Lp~~-----~~~Y~~i~Ld~-----~~vaRT~v~~~-~~nP~W~E~F~f~~~~~~-----~~l~v~v~   74 (146)
T cd04013          11 NSLKLWIIEAKGLPPK-----KRYYCELCLDK-----TLYARTTSKLK-TDTLFWGEHFEFSNLPPV-----SVITVNLY   74 (146)
T ss_pred             EEEEEEEEEccCCCCc-----CCceEEEEECC-----EEEEEEEEEcC-CCCCcceeeEEecCCCcc-----cEEEEEEE
Confidence            5689999999999764     37999999987     35679999877 799999999999764432     47889997


Q ss_pred             ecC-CC----CCcceeEEEEeCcccccccCCCCCCCCCcceEEEEEeecCCCC----------CccEEEEEEEEeccC
Q 021949           85 SDG-LL----GDKTVGEVIVPIKELLDSSSSSSSGDAKSMKFVTYQVRSSSGK----------PKGELHFSYKFSEPT  147 (305)
Q Consensus        85 d~~-~~----~d~~IG~~~vpL~~l~~~~~~~~~~~g~~~~~~~~~l~~~~g~----------~~G~l~lsl~~~~~~  147 (305)
                      +.+ ..    ++++||.+.|++.+|....          ....||+|...+++          ..++|+|+++|.+..
T Consensus        75 k~~~~~~~~~~~~~IG~V~Ip~~~l~~~~----------~ve~Wfpl~~~~~~~~~~~~~~~~~~~~lrik~rf~~~~  142 (146)
T cd04013          75 RESDKKKKKDKSQLIGTVNIPVTDVSSRQ----------FVEKWYPVSTPKGNGKSGGKEGKGESPSIRIKARYQSTR  142 (146)
T ss_pred             EccCccccccCCcEEEEEEEEHHHhcCCC----------cccEEEEeecCCCCCccccccccCCCCEEEEEEEEEEee
Confidence            543 22    5789999999999998533          34789999985443          347999999998754

SynGAP, GAP1, RasGAP, and neurofibromin are all members of the Ras-specific GAP (GTPase-activating protein) family. SynGAP regulates the MAP kinase signaling pathway and is critical for cognition and synapse function. Mutations in this gene causes mental retardation in humans. SynGAP contains a PH-like domain, a C2 domain, and a Ras-GAP domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at leas

>cd08410 C2B_Synaptotagmin-17 C2 domain second repeat present in Synaptotagmin 17

Probab=99.64  E-value=1.7e-15  Score=124.23  Aligned_cols=95  Identities=17%  Similarity=0.282  Sum_probs=77.8

Q ss_pred             ccceEEEEEEEecCCCCCCCCCCCCcEEEEEEecCCCCCCceEEeEecCCCCCCCeeeceEEEEeccchhccCceEEEEE
Q 021949            3 SYRALDLNLISAKHLKDVHLISKMDVYAVVSISGDHTIKKQKVKSHVDRSGGSNPTWNFPIKFTFNQSLAQQNRLTLDFK   82 (305)
Q Consensus         3 ~~~~L~V~vvsA~dL~~~~~~gk~dpYv~v~l~~~~~~~~~~~kT~v~k~~~~nP~Wne~f~f~v~~~~~~~~~~~L~v~   82 (305)
                      ..+.|+|+|++|++|...+.++..||||++.+.... +...+++|+++++ +.||+|||+|.|.+....+.  +..|.|+
T Consensus        12 ~~~~L~V~vi~a~~L~~~d~~g~~DPyV~v~l~~~~-~~~~~~kT~v~~~-t~nP~wnE~F~f~i~~~~l~--~~~l~~~   87 (135)
T cd08410          12 SAGRLNVDIIRAKQLLQTDMSQGSDPFVKIQLVHGL-KLIKTKKTSCMRG-TIDPFYNESFSFKVPQEELE--NVSLVFT   87 (135)
T ss_pred             CCCeEEEEEEEecCCCcccCCCCCCeEEEEEEEcCC-cccceEcCccccC-CCCCccceeEEEeCCHHHhC--CCEEEEE
Confidence            457899999999999998888999999999985421 1135688999887 89999999999999655442  2479999


Q ss_pred             EEecCCC-CCcceeEEEEeC
Q 021949           83 IKSDGLL-GDKTVGEVIVPI  101 (305)
Q Consensus        83 V~d~~~~-~d~~IG~~~vpL  101 (305)
                      |||++.. ++++||++.|..
T Consensus        88 V~d~d~~~~~~~iG~~~l~~  107 (135)
T cd08410          88 VYGHNVKSSNDFIGRIVIGQ  107 (135)
T ss_pred             EEeCCCCCCCcEEEEEEEcC
Confidence            9999877 899999998754

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 17 is located in the brain, kidney, and prostate and is thought to be a peripheral membrane protein. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-

>cd00276 C2B_Synaptotagmin C2 domain second repeat present in Synaptotagmin

Probab=99.64  E-value=4.3e-16  Score=126.79  Aligned_cols=97  Identities=19%  Similarity=0.273  Sum_probs=81.6

Q ss_pred             ccceEEEEEEEecCCCCCCCCCCCCcEEEEEEecCCCCCCceEEeEecCCCCCCCeeeceEEEEeccchhccCceEEEEE
Q 021949            3 SYRALDLNLISAKHLKDVHLISKMDVYAVVSISGDHTIKKQKVKSHVDRSGGSNPTWNFPIKFTFNQSLAQQNRLTLDFK   82 (305)
Q Consensus         3 ~~~~L~V~vvsA~dL~~~~~~gk~dpYv~v~l~~~~~~~~~~~kT~v~k~~~~nP~Wne~f~f~v~~~~~~~~~~~L~v~   82 (305)
                      ..++|+|+|++|++|+..+..+..||||++++..... ...+.+|+++++ +.||.|||+|.|.+....+  ....|.|+
T Consensus        12 ~~~~L~V~v~~a~~L~~~~~~~~~dpyv~v~l~~~~~-~~~~~~T~~~~~-~~~P~wne~f~f~i~~~~l--~~~~l~~~   87 (134)
T cd00276          12 TAERLTVVVLKARNLPPSDGKGLSDPYVKVSLLQGGK-KLKKKKTSVKKG-TLNPVFNEAFSFDVPAEQL--EEVSLVIT   87 (134)
T ss_pred             CCCEEEEEEEEeeCCCCccCCCCCCcEEEEEEEcCCe-EeeeecCcceec-CCCCeeeeeEEEECCHHHh--CCcEEEEE
Confidence            4578999999999999988888999999999976431 124678999877 7999999999999876543  23589999


Q ss_pred             EEecCCC-CCcceeEEEEeCcc
Q 021949           83 IKSDGLL-GDKTVGEVIVPIKE  103 (305)
Q Consensus        83 V~d~~~~-~d~~IG~~~vpL~~  103 (305)
                      |||.+.+ .+++||++.|+|.+
T Consensus        88 v~d~~~~~~~~~lG~~~i~l~~  109 (134)
T cd00276          88 VVDKDSVGRNEVIGQVVLGPDS  109 (134)
T ss_pred             EEecCCCCCCceeEEEEECCCC
Confidence            9999886 78999999999999

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. There are several classes of Synaptotagmins. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distin

>cd08692 C2B_Tac2-N C2 domain second repeat found in Tac2-N (Tandem C2 protein in Nucleus)

Probab=99.64  E-value=2e-15  Score=123.13  Aligned_cols=98  Identities=14%  Similarity=0.232  Sum_probs=80.4

Q ss_pred             ccceEEEEEEEecCCCCCCCCCCCCcEEEEEEecCCCCCCceEEeEecCCCCCCCeeeceEEEEeccchhccCceEEEEE
Q 021949            3 SYRALDLNLISAKHLKDVHLISKMDVYAVVSISGDHTIKKQKVKSHVDRSGGSNPTWNFPIKFTFNQSLAQQNRLTLDFK   82 (305)
Q Consensus         3 ~~~~L~V~vvsA~dL~~~~~~gk~dpYv~v~l~~~~~~~~~~~kT~v~k~~~~nP~Wne~f~f~v~~~~~~~~~~~L~v~   82 (305)
                      ..++|.|+|++|++|+..+..+..||||+|++.....+ ..++||++.++...||.|||+|.|+|....   .+..|.|+
T Consensus        12 ~~~rLtV~VikarnL~~~~~~~~~dpYVKV~L~~~~k~-~~KkKT~v~k~t~~~P~fNEsF~Fdv~~~~---~~v~l~v~   87 (135)
T cd08692          12 VNSRIQLQILEAQNLPSSSTPLTLSFFVKVGMFSTGGL-LYKKKTRLVKSSNGQVKWGETMIFPVTQQE---HGIQFLIK   87 (135)
T ss_pred             cCCeEEEEEEEccCCCcccCCCCCCcEEEEEEEECCCc-ceeecCccEECCCCCceecceEEEeCCchh---heeEEEEE
Confidence            45789999999999998654456799999999865443 578999998873357999999999998653   23789999


Q ss_pred             EEecCCC-CCcceeEEEEeCccc
Q 021949           83 IKSDGLL-GDKTVGEVIVPIKEL  104 (305)
Q Consensus        83 V~d~~~~-~d~~IG~~~vpL~~l  104 (305)
                      |||++.. ++++||++.+.+++.
T Consensus        88 v~d~~~~~~n~~IG~v~lG~~~~  110 (135)
T cd08692          88 LYSRSSVRRKHFLGQVWISSDSS  110 (135)
T ss_pred             EEeCCCCcCCceEEEEEECCccC
Confidence            9999877 899999999998764

Tac2-N contains two C2 domains and a short C-terminus including a WHXL motif, which are key in stabilizing transport vesicles to the plasma membrane by binding to a plasma membrane. However unlike the usual carboxyl-terminal-type (C-type) tandem C2 proteins, it lacks a transmembrane domain, a Slp-homology domain, and a Munc13-1-interacting domain. Homology search analysis indicate that no known protein motifs are located in its N-terminus, making Tac2-N a novel class of Ca2+-independent, C-type tandem C2 proteins. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polypho

>cd08686 C2_ABR C2 domain in the Active BCR (Breakpoint cluster region) Related protein

Probab=99.64  E-value=5.4e-15  Score=117.58  Aligned_cols=84  Identities=20%  Similarity=0.296  Sum_probs=67.6

Q ss_pred             EEEEEEEecCCCCCCCCCCCCcEEEEEEecCCCCCCceEEeEecCCCCCCCeeeceEEEEeccchhccCceEEEEEEEec
Q 021949            7 LDLNLISAKHLKDVHLISKMDVYAVVSISGDHTIKKQKVKSHVDRSGGSNPTWNFPIKFTFNQSLAQQNRLTLDFKIKSD   86 (305)
Q Consensus         7 L~V~vvsA~dL~~~~~~gk~dpYv~v~l~~~~~~~~~~~kT~v~k~~~~nP~Wne~f~f~v~~~~~~~~~~~L~v~V~d~   86 (305)
                      |+|+|++|++|+     +..||||++.+...... ..+.||+++++ +.||+|||+|.|.+...      ..|.|.|||+
T Consensus         1 L~V~V~~A~~L~-----~~sDPYV~l~v~~~~~~-~~~~KTk~i~~-TlnPvWnE~F~i~l~~s------~~L~~~v~d~   67 (118)
T cd08686           1 LNVIVHSAQGFK-----QSANLYCTLEVDSFGYF-VKKAKTRVCRD-TTEPNWNEEFEIELEGS------QTLRILCYEK   67 (118)
T ss_pred             CEEEEEeCCCCC-----CCCCCEEEEEEcCcccc-ceeeeeeeecC-CCCCccceEEEEEeCCC------CEEEEEEEEc
Confidence            689999999996     34899999998764321 25799999988 89999999999999632      4899999998


Q ss_pred             C-------CC-CCcceeEEEEeCcc
Q 021949           87 G-------LL-GDKTVGEVIVPIKE  103 (305)
Q Consensus        87 ~-------~~-~d~~IG~~~vpL~~  103 (305)
                      +       .. .|++||++.|.|+-
T Consensus        68 ~~~~~~~d~~~~d~~~G~g~i~Ld~   92 (118)
T cd08686          68 CYSKVKLDGEGTDAIMGKGQIQLDP   92 (118)
T ss_pred             ccccccccccCcccEEEEEEEEECH
Confidence            3       33 68999887777644

The ABR protein is similar to the breakpoint cluster region protein. It has homology to guanine nucleotide exchange proteins and GTPase-activating proteins (GAPs). ABR is expressed primarily in the brain, but also includes non-neuronal tissues such as the heart. It has been associated with human diseases such as Miller-Dieker syndrome in which mental retardation and malformations of the heart are present. ABR contains a RhoGEF domain and a PH-like domain upstream of its C2 domain and a RhoGAP domain downstream of this domain. A few members also contain a Bcr-Abl oncoprotein oligomerization domain at the very N-terminal end. Splice variants of ABR have been identified. ABR is found in a wide variety of organisms including chimpanzee, dog, mouse, rat, fruit fly, and mosquito. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arr

>cd08409 C2B_Synaptotagmin-15 C2 domain second repeat present in Synaptotagmin 15

Probab=99.63  E-value=2e-15  Score=124.10  Aligned_cols=97  Identities=18%  Similarity=0.301  Sum_probs=80.1

Q ss_pred             ccceEEEEEEEecCCCCCCCCCCCCcEEEEEEecCCCCCCceEEeEecCCCCCCCeeeceEEEEeccchhccCceEEEEE
Q 021949            3 SYRALDLNLISAKHLKDVHLISKMDVYAVVSISGDHTIKKQKVKSHVDRSGGSNPTWNFPIKFTFNQSLAQQNRLTLDFK   82 (305)
Q Consensus         3 ~~~~L~V~vvsA~dL~~~~~~gk~dpYv~v~l~~~~~~~~~~~kT~v~k~~~~nP~Wne~f~f~v~~~~~~~~~~~L~v~   82 (305)
                      ..++|+|+|++|+||...+ ++.+|+||+|++...... ..++||+++++ +.||+|||+|.|.|....+.  ...|.|+
T Consensus        13 ~~~~L~V~V~~a~nL~~~~-~~~~d~yVkv~l~~~~~~-~~~~kT~v~~~-~~nP~fnE~F~f~i~~~~l~--~~~L~~~   87 (137)
T cd08409          13 TLNRLTVVVLRARGLRQLD-HAHTSVYVKVSLMIHNKV-VKTKKTEVVDG-AASPSFNESFSFKVTSRQLD--TASLSLS   87 (137)
T ss_pred             CCCeEEEEEEEecCCCccc-CCCCCeEEEEEEEECCEE-eeeeecccEeC-CCCCcccceEEEECCHHHhC--ccEEEEE
Confidence            3478999999999999888 788999999999864321 24778999776 89999999999999766543  3689999


Q ss_pred             EEecCCC-CCcceeEEEEeCccc
Q 021949           83 IKSDGLL-GDKTVGEVIVPIKEL  104 (305)
Q Consensus        83 V~d~~~~-~d~~IG~~~vpL~~l  104 (305)
                      ||+.+.. ++++||++.|.....
T Consensus        88 V~~~~~~~~~~~lG~v~ig~~~~  110 (137)
T cd08409          88 VMQSGGVRKSKLLGRVVLGPFMY  110 (137)
T ss_pred             EEeCCCCCCcceEEEEEECCccc
Confidence            9999877 789999999986544

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. It is thought to be involved in the trafficking and exocytosis of secretory vesicles in non-neuronal tissues and is Ca2+ independent. Human synaptotagmin 15 has 2 alternatively spliced forms that encode proteins with different C-termini. The larger, SYT15a, contains a N-terminal TM region, a putative fatty-acylation site, and 2 tandem C terminal C2 domains. The smaller, SYT15b, lacks the C-terminal portion of the second C2 domain. Unlike most other synaptotagmins it is nearly absent in the brain and rather is found in the heart, lungs, skeletal muscle, and testis. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 id

>cd04047 C2B_Copine C2 domain second repeat in Copine

Probab=99.62  E-value=5.3e-15  Score=116.62  Aligned_cols=97  Identities=16%  Similarity=0.236  Sum_probs=77.5

Q ss_pred             EEEEEEecCCCCCCCCCCCCcEEEEEEecCCCCCCceEEeEecCCCCCCCeeeceEEEEeccchhccCceEEEEEEEecC
Q 021949            8 DLNLISAKHLKDVHLISKMDVYAVVSISGDHTIKKQKVKSHVDRSGGSNPTWNFPIKFTFNQSLAQQNRLTLDFKIKSDG   87 (305)
Q Consensus         8 ~V~vvsA~dL~~~~~~gk~dpYv~v~l~~~~~~~~~~~kT~v~k~~~~nP~Wne~f~f~v~~~~~~~~~~~L~v~V~d~~   87 (305)
                      .+..++|++|+..+.++++||||+|++.++......+++|+++++ +.||+|| +|.|.+......+....|.|+|||++
T Consensus         3 ~~~~i~a~~L~~~d~~~~~DPyv~v~~~~~~~~~~~~~kT~vi~~-t~nP~Wn-~f~~~~~~l~~~~~~~~l~~~V~d~d   80 (110)
T cd04047           3 VELQFSGKKLDKKDFFGKSDPFLEISRQSEDGTWVLVYRTEVIKN-TLNPVWK-PFTIPLQKLCNGDYDRPIKIEVYDYD   80 (110)
T ss_pred             EEEEEEeCCCCCCCCCCCCCeeEEEEEECCCCCEEEEEeeeEecc-CCCCceE-EEEEEHHHhcCCCcCCEEEEEEEEeC
Confidence            455679999999999999999999998764322245799999988 7999999 67777643322111358999999999


Q ss_pred             CC-CCcceeEEEEeCccccc
Q 021949           88 LL-GDKTVGEVIVPIKELLD  106 (305)
Q Consensus        88 ~~-~d~~IG~~~vpL~~l~~  106 (305)
                      .+ +|++||++.++|.+|..
T Consensus        81 ~~~~d~~iG~~~~~l~~l~~  100 (110)
T cd04047          81 SSGKHDLIGEFETTLDELLK  100 (110)
T ss_pred             CCCCCcEEEEEEEEHHHHhc
Confidence            88 78999999999999984

There are 2 copies of the C2 domain present in copine, a protein involved in membrane trafficking, protein-protein interactions, and perhaps even cell division and growth. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 dom

>PLN03200 cellulose synthase-interactive protein; Provisional

Probab=99.62  E-value=2e-15  Score=164.33  Aligned_cols=121  Identities=16%  Similarity=0.358  Sum_probs=101.0

Q ss_pred             cceEEEEEEEecCCCCCCCCCCCCcEEEEEEecCCCCCCceEEeEecCCCCCCCeeeceEEEEeccchhccCceEEEEEE
Q 021949            4 YRALDLNLISAKHLKDVHLISKMDVYAVVSISGDHTIKKQKVKSHVDRSGGSNPTWNFPIKFTFNQSLAQQNRLTLDFKI   83 (305)
Q Consensus         4 ~~~L~V~vvsA~dL~~~~~~gk~dpYv~v~l~~~~~~~~~~~kT~v~k~~~~nP~Wne~f~f~v~~~~~~~~~~~L~v~V   83 (305)
                      .+.|.|+|++|+||+  ..++++||||++.+++.     .+.||+++++ +.||+|||+|.|.++....   +..|+|+|
T Consensus      1979 ~G~L~V~V~~a~nl~--~~~~~sdPyv~l~~g~~-----~~~kTkvvk~-~~nP~Wne~f~~~~~~p~~---~~~l~iev 2047 (2102)
T PLN03200       1979 PGSLTVTIKRGNNLK--QSMGNTNAFCKLTLGNG-----PPRQTKVVSH-SSSPEWKEGFTWAFDSPPK---GQKLHISC 2047 (2102)
T ss_pred             CcceEEEEeeccccc--cccCCCCCeEEEEECCC-----CcccccccCC-CCCCCcccceeeeecCCCC---CCceEEEE
Confidence            378999999999998  55789999999999962     4779999998 7999999999998876542   24799999


Q ss_pred             EecCCCCCcceeEEEEeCcccccccCCCCCCCCCcceEEEEEeecCCCCCccE---EEEEEEEecc
Q 021949           84 KSDGLLGDKTVGEVIVPIKELLDSSSSSSSGDAKSMKFVTYQVRSSSGKPKGE---LHFSYKFSEP  146 (305)
Q Consensus        84 ~d~~~~~d~~IG~~~vpL~~l~~~~~~~~~~~g~~~~~~~~~l~~~~g~~~G~---l~lsl~~~~~  146 (305)
                      ||++.++++.+|.+.|+|.+++.+.          ....||.|.. +++..|+   |+|+|+|..+
T Consensus      2048 ~d~d~f~kd~~G~~~i~l~~vv~~~----------~~~~~~~L~~-~~~k~G~~~~~~~e~~w~~~ 2102 (2102)
T PLN03200       2048 KSKNTFGKSSLGKVTIQIDRVVMEG----------TYSGEYSLNP-ESNKDGSSRTLEIEFQWSNR 2102 (2102)
T ss_pred             EecCccCCCCCceEEEEHHHHhcCc----------eeeeeeecCc-ccccCCCcceEEEEEEecCC
Confidence            9999997779999999999999644          2477899984 4555666   9999998753

>KOG1028 consensus Ca2+-dependent phospholipid-binding protein Synaptotagmin, required for synaptic vesicle and secretory granule exocytosis [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]

Probab=99.62  E-value=6.7e-15  Score=141.86  Aligned_cols=129  Identities=24%  Similarity=0.280  Sum_probs=105.8

Q ss_pred             ccceEEEEEEEecCCCCCCCCCCCCcEEEEEEecCCCCCCceEEeEecCCCCCCCeeeceEEEEeccchhccCceEEEEE
Q 021949            3 SYRALDLNLISAKHLKDVHLISKMDVYAVVSISGDHTIKKQKVKSHVDRSGGSNPTWNFPIKFTFNQSLAQQNRLTLDFK   82 (305)
Q Consensus         3 ~~~~L~V~vvsA~dL~~~~~~gk~dpYv~v~l~~~~~~~~~~~kT~v~k~~~~nP~Wne~f~f~v~~~~~~~~~~~L~v~   82 (305)
                      ....|.|+|+.|++|...+..+.+||||++++..+.   ..+.+|+|+++ ++||.|||+|.|.|....+.  ...|.|.
T Consensus       165 ~~~~L~V~V~qa~~Lp~~d~~g~sdpyVK~~llPdk---~~k~kT~v~r~-tlnP~fnEtf~f~v~~~~l~--~~~L~l~  238 (421)
T KOG1028|consen  165 ELNLLTVRVIQAHDLPAKDRGGTSDPYVKVYLLPDK---KGKFKTRVHRK-TLNPVFNETFRFEVPYEELS--NRVLHLS  238 (421)
T ss_pred             cCCEEEEEEEEecCCCcccCCCCCCCeeEEEEcCCC---CCcceeeeeec-CcCCccccceEeecCHHHhc--cCEEEEE
Confidence            356799999999999988855789999999999875   57999999988 89999999999998766443  3699999


Q ss_pred             EEecCCC-CCcceeEEEEeCcccccccCCCCCCCCCcceEEEEEeecC---CCCCccEEEEEEEEeccC
Q 021949           83 IKSDGLL-GDKTVGEVIVPIKELLDSSSSSSSGDAKSMKFVTYQVRSS---SGKPKGELHFSYKFSEPT  147 (305)
Q Consensus        83 V~d~~~~-~d~~IG~~~vpL~~l~~~~~~~~~~~g~~~~~~~~~l~~~---~g~~~G~l~lsl~~~~~~  147 (305)
                      |||.+.| +|++||++.|+|.++....          ....|+.+...   .....|+|.|+++|.+..
T Consensus       239 V~~~drfsr~~~iGev~~~l~~~~~~~----------~~~~w~~l~~~~~~~~~~~gel~~sL~Y~p~~  297 (421)
T KOG1028|consen  239 VYDFDRFSRHDFIGEVILPLGEVDLLS----------TTLFWKDLQPSSTDSEELAGELLLSLCYLPTA  297 (421)
T ss_pred             EEecCCcccccEEEEEEecCccccccc----------cceeeeccccccCCcccccceEEEEEEeecCC
Confidence            9999998 8999999999999987533          13556666653   222338999999999873

>KOG0696 consensus Serine/threonine protein kinase [Signal transduction mechanisms]

Probab=99.60  E-value=4.7e-16  Score=145.10  Aligned_cols=109  Identities=20%  Similarity=0.215  Sum_probs=93.7

Q ss_pred             cceEEEEEEEecCCCCCCCCCCCCcEEEEEEecCCCCCCceEEeEecCCCCCCCeeeceEEEEeccchhccCceEEEEEE
Q 021949            4 YRALDLNLISAKHLKDVHLISKMDVYAVVSISGDHTIKKQKVKSHVDRSGGSNPTWNFPIKFTFNQSLAQQNRLTLDFKI   83 (305)
Q Consensus         4 ~~~L~V~vvsA~dL~~~~~~gk~dpYv~v~l~~~~~~~~~~~kT~v~k~~~~nP~Wne~f~f~v~~~~~~~~~~~L~v~V   83 (305)
                      ...|+|+|.+|++|...+.+|.+||||.+.+..++.. ..++||++++. ++||+|||+|+|.+.....   +..|.|+|
T Consensus       179 ~~~l~v~i~ea~NLiPMDpNGlSDPYvk~kliPD~~~-~sKqKTkTik~-~LNP~wNEtftf~Lkp~Dk---drRlsiEv  253 (683)
T KOG0696|consen  179 RDVLTVTIKEAKNLIPMDPNGLSDPYVKLKLIPDPKN-ESKQKTKTIKA-TLNPVWNETFTFKLKPSDK---DRRLSIEV  253 (683)
T ss_pred             CceEEEEehhhccccccCCCCCCCcceeEEeccCCcc-hhhhhhhhhhh-hcCccccceeEEecccccc---cceeEEEE
Confidence            3568999999999999999999999999999876543 57899999998 8999999999999987653   46899999


Q ss_pred             EecCCC-CCcceeEEEEeCcccccccCCCCCCCCCcceEEEEEeec
Q 021949           84 KSDGLL-GDKTVGEVIVPIKELLDSSSSSSSGDAKSMKFVTYQVRS  128 (305)
Q Consensus        84 ~d~~~~-~d~~IG~~~vpL~~l~~~~~~~~~~~g~~~~~~~~~l~~  128 (305)
                      |||+.. +++|+|...+.++||....           ...||.|..
T Consensus       254 WDWDrTsRNDFMGslSFgisEl~K~p-----------~~GWyKlLs  288 (683)
T KOG0696|consen  254 WDWDRTSRNDFMGSLSFGISELQKAP-----------VDGWYKLLS  288 (683)
T ss_pred             ecccccccccccceecccHHHHhhcc-----------hhhHHHHhh
Confidence            999877 8999999999999998644           245777765

>PF00168 C2: C2 domain; InterPro: IPR000008 The C2 domain is a Ca2+-dependent membrane-targeting module found in many cellular proteins involved in signal transduction or membrane trafficking

Probab=99.52  E-value=1.1e-13  Score=102.70  Aligned_cols=84  Identities=30%  Similarity=0.476  Sum_probs=72.4

Q ss_pred             EEEEEEEecCCCCCCCCCCCCcEEEEEEecCCCCCCceEEeEecCCCCCCCeeeceEEEEeccchhccCceEEEEEEEec
Q 021949            7 LDLNLISAKHLKDVHLISKMDVYAVVSISGDHTIKKQKVKSHVDRSGGSNPTWNFPIKFTFNQSLAQQNRLTLDFKIKSD   86 (305)
Q Consensus         7 L~V~vvsA~dL~~~~~~gk~dpYv~v~l~~~~~~~~~~~kT~v~k~~~~nP~Wne~f~f~v~~~~~~~~~~~L~v~V~d~   86 (305)
                      |+|+|++|++|...+..++.|+||++++....   ..+.+|+++++ +.+|.|||+|.|.+.....    ..|.|+|||+
T Consensus         1 L~v~I~~a~~L~~~~~~~~~~~yv~v~~~~~~---~~~~~T~~~~~-~~~P~w~e~~~~~~~~~~~----~~l~~~V~~~   72 (85)
T PF00168_consen    1 LTVTIHSARNLPSKDSNGKPDPYVRVSVNGSE---STKYKTKVKKN-TSNPVWNEEFEFPLDDPDL----DSLSFEVWDK   72 (85)
T ss_dssp             EEEEEEEEESSSSSSTTSSBEEEEEEEEETTT---CEEEEECCBSS-BSSEEEEEEEEEEESHGCG----TEEEEEEEEE
T ss_pred             CEEEEEEEECCCCcccCCcccccceeecceee---eeeeeeeeeec-cccceeeeeeeeeeecccc----cceEEEEEEC
Confidence            78999999999988777899999999999753   24699999888 6999999999999866554    3599999999


Q ss_pred             CCC-CCcceeEEE
Q 021949           87 GLL-GDKTVGEVI   98 (305)
Q Consensus        87 ~~~-~d~~IG~~~   98 (305)
                      +.. .|++||++.
T Consensus        73 ~~~~~~~~iG~~~   85 (85)
T PF00168_consen   73 DSFGKDELIGEVK   85 (85)
T ss_dssp             TSSSSEEEEEEEE
T ss_pred             CCCCCCCEEEEEC
Confidence            988 599999974

C2 domains are unique among membrane targeting domains in that they show wide range of lipid selectivity for the major components of cell membranes, including phosphatidylserine and phosphatidylcholine. This C2 domain is about 116 amino-acid residues and is located between the two copies of the C1 domain in Protein Kinase C (that bind phorbol esters and diacylglycerol) (see PDOC00379 from PROSITEDOC) and the protein kinase catalytic domain (see PDOC00100 from PROSITEDOC). Regions with significant homology [] to the C2-domain have been found in many proteins. The C2 domain is thought to be involved in calcium-dependent phospholipid binding [] and in membrane targetting processes such as subcellular localisation. The 3D structure of the C2 domain of synaptotagmin has been reported [], the domain forms an eight-stranded beta sandwich constructed around a conserved 4-stranded motif, designated a C2 key []. Calcium binds in a cup-shaped depression formed by the N- and C-terminal loops of the C2-key motif. Structural analyses of several C2 domains have shown them to consist of similar ternary structures in which three Ca2+-binding loops are located at the end of an 8 stranded antiparallel beta sandwich. ; GO: 0005515 protein binding; PDB: 1RSY_A 1BYN_A 3NSJ_A 3QR1_D 3HN8_C 1DQV_A 3M7F_B 3KWU_A 3KWT_A 1V27_A ....

>KOG1011 consensus Neurotransmitter release regulator, UNC-13 [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]

Probab=99.44  E-value=2e-13  Score=132.45  Aligned_cols=118  Identities=17%  Similarity=0.302  Sum_probs=97.0

Q ss_pred             ceEEEEEEEecCCCCCCCCCCCCcEEEEEEecCCCCCCceEEeEecCCCCCCCeeeceEEEEeccchhccCceEEEEEEE
Q 021949            5 RALDLNLISAKHLKDVHLISKMDVYAVVSISGDHTIKKQKVKSHVDRSGGSNPTWNFPIKFTFNQSLAQQNRLTLDFKIK   84 (305)
Q Consensus         5 ~~L~V~vvsA~dL~~~~~~gk~dpYv~v~l~~~~~~~~~~~kT~v~k~~~~nP~Wne~f~f~v~~~~~~~~~~~L~v~V~   84 (305)
                      -++.++|+.|.+|...+..|++||||++.++.      .+.||+++.. .+||+|||+|+|++.++.     ..|+|.||
T Consensus       295 akitltvlcaqgl~akdktg~sdpyvt~qv~k------tkrrtrti~~-~lnpvw~ekfhfechnst-----drikvrvw  362 (1283)
T KOG1011|consen  295 AKITLTVLCAQGLIAKDKTGKSDPYVTAQVGK------TKRRTRTIHQ-ELNPVWNEKFHFECHNST-----DRIKVRVW  362 (1283)
T ss_pred             eeeEEeeeecccceecccCCCCCCcEEEeecc------cchhhHhhhh-ccchhhhhheeeeecCCC-----ceeEEEEe
Confidence            35889999999999999999999999999986      6788888877 799999999999998875     48999999


Q ss_pred             ecCC---------C---CCcceeEEEEeCcccccccCCCCCCCCCcceEEEEEeecC--CCCCccEEEEEEEEecc
Q 021949           85 SDGL---------L---GDKTVGEVIVPIKELLDSSSSSSSGDAKSMKFVTYQVRSS--SGKPKGELHFSYKFSEP  146 (305)
Q Consensus        85 d~~~---------~---~d~~IG~~~vpL~~l~~~~~~~~~~~g~~~~~~~~~l~~~--~g~~~G~l~lsl~~~~~  146 (305)
                      |++.         +   .|+|+|+..|.+++|.. .           ..+||.|.+.  .....|.|+|.|.+.=+
T Consensus       363 ded~dlksklrqkl~resddflgqtvievrtlsg-e-----------mdvwynlekrtdksavsgairlhisveik  426 (1283)
T KOG1011|consen  363 DEDNDLKSKLRQKLTRESDDFLGQTVIEVRTLSG-E-----------MDVWYNLEKRTDKSAVSGAIRLHISVEIK  426 (1283)
T ss_pred             cCcccHHHHHHHHhhhcccccccceeEEEEeccc-c-----------hhhhcchhhccchhhccceEEEEEEEEEc
Confidence            9864         1   58899999999888763 2           3678888764  34478888777766544

>PLN02223 phosphoinositide phospholipase C

Probab=99.44  E-value=1.9e-12  Score=126.13  Aligned_cols=120  Identities=21%  Similarity=0.365  Sum_probs=90.7

Q ss_pred             ceEEEEEEEecCCC-C----CCCCCCCCcEEEEEEecCCCCCCceEEeEecCCCCCCCeeeceEEEEeccchhccCceEE
Q 021949            5 RALDLNLISAKHLK-D----VHLISKMDVYAVVSISGDHTIKKQKVKSHVDRSGGSNPTWNFPIKFTFNQSLAQQNRLTL   79 (305)
Q Consensus         5 ~~L~V~vvsA~dL~-~----~~~~gk~dpYv~v~l~~~~~~~~~~~kT~v~k~~~~nP~Wne~f~f~v~~~~~~~~~~~L   79 (305)
                      .+|.|+|++++.|. +    .+.....||||+|.|.+-+.+ ..+++|+|. +++.||.|||+|.|.|...++    ..|
T Consensus       409 ~~L~V~Visgq~~~~~~~k~~~~~s~~DpyV~VeI~Gvp~D-~~~~kT~v~-nNg~nPvWne~F~F~i~~PEL----AlL  482 (537)
T PLN02223        409 KILKVKIYMGDGWIVDFKKRIGRLSKPDLYVRISIAGVPHD-EKIMKTTVK-NNEWKPTWGEEFTFPLTYPDL----ALI  482 (537)
T ss_pred             eEEEEEEEEcccccCCcccccCCCCCCCeEEEEEEeeccCC-cceeEEEeC-CCCcCceecceeEEEEEccCc----eEE
Confidence            57999999999863 1    123456899999999875443 356678765 558999999999999877654    579


Q ss_pred             EEEEEecCCC-CCcceeEEEEeCcccccccCCCCCCCCCcceEEEEEeecCCCCC--ccEEEEEEEE
Q 021949           80 DFKIKSDGLL-GDKTVGEVIVPIKELLDSSSSSSSGDAKSMKFVTYQVRSSSGKP--KGELHFSYKF  143 (305)
Q Consensus        80 ~v~V~d~~~~-~d~~IG~~~vpL~~l~~~~~~~~~~~g~~~~~~~~~l~~~~g~~--~G~l~lsl~~  143 (305)
                      .|+|+|++.. .|+|||+..+|+.+|.. +            .++.+|++..|+.  .-+|.+.+.|
T Consensus       483 rf~V~D~D~~~~ddfiGQ~~LPv~~Lr~-G------------yR~VpL~~~~g~~l~~~~Ll~~f~~  536 (537)
T PLN02223        483 SFEVYDYEVSTADAFCGQTCLPVSELIE-G------------IRAVPLYDERGKACSSTMLLTRFKW  536 (537)
T ss_pred             EEEEEecCCCCCCcEEEEEecchHHhcC-C------------ceeEeccCCCcCCCCCceEEEEEEe
Confidence            9999999877 78999999999999984 2            4566888877764  3344444443

>PLN02270 phospholipase D alpha

Probab=99.41  E-value=2.6e-12  Score=129.78  Aligned_cols=126  Identities=16%  Similarity=0.291  Sum_probs=104.5

Q ss_pred             ccceEEEEEEEecCCCCCC-----------------C-CCCCCcEEEEEEecCCCCCCceEEeEecCCCCCCCeeeceEE
Q 021949            3 SYRALDLNLISAKHLKDVH-----------------L-ISKMDVYAVVSISGDHTIKKQKVKSHVDRSGGSNPTWNFPIK   64 (305)
Q Consensus         3 ~~~~L~V~vvsA~dL~~~~-----------------~-~gk~dpYv~v~l~~~~~~~~~~~kT~v~k~~~~nP~Wne~f~   64 (305)
                      -+++|+|+|++|++|++.+                 . .+.+|+||+|.+.+     .+..||+++++...||.|||+|.
T Consensus         6 lhg~l~~~i~ea~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~tv~~~~-----a~v~rtr~~~~~~~~p~w~e~f~   80 (808)
T PLN02270          6 LHGTLHATIYEVDKLHSGGGPGFLGKLVANVEETVGVGKGESQLYATIDLEK-----ARVGRTRKIENEPKNPRWYESFH   80 (808)
T ss_pred             eecceEEEEEEcccCCCcchhhHHHHHHhccchhccCCCCCCCceEEEEeCC-----cEEEEEeecCCCCCCCccccceE
Confidence            3689999999999998621                 0 13579999999987     47899999987557999999999


Q ss_pred             EEeccchhccCceEEEEEEEecCCCCCcceeEEEEeCcccccccCCCCCCCCCcceEEEEEeecCCCCC---ccEEEEEE
Q 021949           65 FTFNQSLAQQNRLTLDFKIKSDGLLGDKTVGEVIVPIKELLDSSSSSSSGDAKSMKFVTYQVRSSSGKP---KGELHFSY  141 (305)
Q Consensus        65 f~v~~~~~~~~~~~L~v~V~d~~~~~d~~IG~~~vpL~~l~~~~~~~~~~~g~~~~~~~~~l~~~~g~~---~G~l~lsl  141 (305)
                      +.+....     ..|+|.|+|.+.++..+||.+.||+.+|+...          .-..||.+...++++   .-+|+|++
T Consensus        81 i~~ah~~-----~~v~f~vkd~~~~g~~~ig~~~~p~~~~~~g~----------~i~~~~~~~~~~~~p~~~~~~~~~~~  145 (808)
T PLN02270         81 IYCAHMA-----SNIIFTVKDDNPIGATLIGRAYIPVEEILDGE----------EVDRWVEILDNDKNPIHGGSKIHVKL  145 (808)
T ss_pred             EeeccCc-----ceEEEEEecCCccCceEEEEEEEEHHHhcCCC----------ccccEEeccCCCCCcCCCCCEEEEEE
Confidence            9997765     58999999999999899999999999998643          236789999887764   24899999


Q ss_pred             EEeccCC
Q 021949          142 KFSEPTV  148 (305)
Q Consensus       142 ~~~~~~~  148 (305)
                      +|.+...
T Consensus       146 ~f~~~~~  152 (808)
T PLN02270        146 QYFEVTK  152 (808)
T ss_pred             EEEEccc
Confidence            9998654

>PLN02952 phosphoinositide phospholipase C

Probab=99.39  E-value=6e-12  Score=124.83  Aligned_cols=122  Identities=16%  Similarity=0.259  Sum_probs=95.0

Q ss_pred             cceEEEEEEEecCCCC------CCCCCCCCcEEEEEEecCCCCCCceEEeEecCCCCCCCeeeceEEEEeccchhccCce
Q 021949            4 YRALDLNLISAKHLKD------VHLISKMDVYAVVSISGDHTIKKQKVKSHVDRSGGSNPTWNFPIKFTFNQSLAQQNRL   77 (305)
Q Consensus         4 ~~~L~V~vvsA~dL~~------~~~~gk~dpYv~v~l~~~~~~~~~~~kT~v~k~~~~nP~Wne~f~f~v~~~~~~~~~~   77 (305)
                      ..+|.|+|+++.+|..      .+.+...|+||+|.+.+-+.. ..+.+|+++++ +.||.|||+|.|.+...++    .
T Consensus       469 ~~~L~V~VisGq~l~lp~~~~~~~~~~~~D~yV~V~i~G~p~D-~~~~kTkvi~n-N~nPvWnE~F~F~i~~PEL----A  542 (599)
T PLN02952        469 KKTLKVKVYLGDGWRLDFSHTHFDSYSPPDFYTKMYIVGVPAD-NAKKKTKIIED-NWYPAWNEEFSFPLTVPEL----A  542 (599)
T ss_pred             cceEEEEEEECcccCCCCccccCCccCCCCceEEEEEeccCCC-CcceeeeeccC-CCCcccCCeeEEEEEcCCc----c
Confidence            3679999999988742      122344699999999875443 46779999988 5999999999999876554    4


Q ss_pred             EEEEEEEecCCC-CCcceeEEEEeCcccccccCCCCCCCCCcceEEEEEeecCCCCCccEEEEEEEEe
Q 021949           78 TLDFKIKSDGLL-GDKTVGEVIVPIKELLDSSSSSSSGDAKSMKFVTYQVRSSSGKPKGELHFSYKFS  144 (305)
Q Consensus        78 ~L~v~V~d~~~~-~d~~IG~~~vpL~~l~~~~~~~~~~~g~~~~~~~~~l~~~~g~~~G~l~lsl~~~  144 (305)
                      .|.|+|||++.. .|+|||++.|||..|.. +            .++++|++..|+..+.++|-|+|.
T Consensus       543 llrf~V~D~D~~~~ddfiGq~~lPv~~Lr~-G------------yR~VpL~~~~G~~l~~a~Llv~f~  597 (599)
T PLN02952        543 LLRIEVREYDMSEKDDFGGQTCLPVSELRP-G------------IRSVPLHDKKGEKLKNVRLLMRFI  597 (599)
T ss_pred             EEEEEEEecCCCCCCCeEEEEEcchhHhcC-C------------ceeEeCcCCCCCCCCCEEEEEEEE
Confidence            789999999877 78999999999999984 2            347789888888766666666653

>KOG2059 consensus Ras GTPase-activating protein [Signal transduction mechanisms]

Probab=99.37  E-value=2.1e-12  Score=126.64  Aligned_cols=128  Identities=16%  Similarity=0.274  Sum_probs=107.8

Q ss_pred             CCccceEEEEEEEecCCCCCCCCCCCCcEEEEEEecCCCCCCceEEeEecCCCCCCCeeeceEEEEeccchhccCceEEE
Q 021949            1 MASYRALDLNLISAKHLKDVHLISKMDVYAVVSISGDHTIKKQKVKSHVDRSGGSNPTWNFPIKFTFNQSLAQQNRLTLD   80 (305)
Q Consensus         1 m~~~~~L~V~vvsA~dL~~~~~~gk~dpYv~v~l~~~~~~~~~~~kT~v~k~~~~nP~Wne~f~f~v~~~~~~~~~~~L~   80 (305)
                      |+-...|.|+|.+|++|...+..+..|+||+|.++.+     ...||.++.+ ++.|.|.|+|.|+|+...     ..|.
T Consensus         1 ~~~~~sl~vki~E~knL~~~~~~g~~D~yC~v~lD~E-----~v~RT~tv~k-sL~PF~gEe~~~~iP~~F-----~~l~   69 (800)
T KOG2059|consen    1 VRVEQSLKVKIGEAKNLPSYGPSGMRDCYCTVNLDQE-----EVCRTATVEK-SLCPFFGEEFYFEIPRTF-----RYLS   69 (800)
T ss_pred             CccccceeEEEeecccCCCCCCCCCcCcceEEeecch-----hhhhhhhhhh-hcCCccccceEEecCcce-----eeEE
Confidence            4455779999999999999988899999999999985     6889999988 899999999999998765     5899


Q ss_pred             EEEEecCCCCCcceeEEEEeCcccccccCCCCCCCCCcceEEEEEee--cCCCCCccEEEEEEEEeccCCC
Q 021949           81 FKIKSDGLLGDKTVGEVIVPIKELLDSSSSSSSGDAKSMKFVTYQVR--SSSGKPKGELHFSYKFSEPTVG  149 (305)
Q Consensus        81 v~V~d~~~~~d~~IG~~~vpL~~l~~~~~~~~~~~g~~~~~~~~~l~--~~~g~~~G~l~lsl~~~~~~~~  149 (305)
                      |-|||++..+|+.||.+.|.=++|....     +     ...|+.|+  +++.+.+|+|+|++++.+...+
T Consensus        70 fYv~D~d~~~D~~IGKvai~re~l~~~~-----~-----~d~W~~L~~VD~dsEVQG~v~l~l~~~e~~~~  130 (800)
T KOG2059|consen   70 FYVWDRDLKRDDIIGKVAIKREDLHMYP-----G-----KDTWFSLQPVDPDSEVQGKVHLELALTEAIQS  130 (800)
T ss_pred             EEEeccccccccccceeeeeHHHHhhCC-----C-----CccceeccccCCChhhceeEEEEEEeccccCC
Confidence            9999999338999999999988887433     2     23455554  5788899999999999987654

>smart00239 C2 Protein kinase C conserved region 2 (CalB)

Probab=99.37  E-value=8.9e-12  Score=94.45  Aligned_cols=94  Identities=30%  Similarity=0.495  Sum_probs=78.8

Q ss_pred             eEEEEEEEecCCCCCCCCCCCCcEEEEEEecCCCCCCceEEeEecCCCCCCCeeeceEEEEeccchhccCceEEEEEEEe
Q 021949            6 ALDLNLISAKHLKDVHLISKMDVYAVVSISGDHTIKKQKVKSHVDRSGGSNPTWNFPIKFTFNQSLAQQNRLTLDFKIKS   85 (305)
Q Consensus         6 ~L~V~vvsA~dL~~~~~~gk~dpYv~v~l~~~~~~~~~~~kT~v~k~~~~nP~Wne~f~f~v~~~~~~~~~~~L~v~V~d   85 (305)
                      +|.|+|+++++|.........++||++++....   ....+|+++++ +.||.|||+|.|.+....    ...|.|+||+
T Consensus         1 ~l~i~i~~~~~l~~~~~~~~~~~yv~v~~~~~~---~~~~~T~~~~~-~~~P~w~e~~~~~~~~~~----~~~l~i~v~~   72 (101)
T smart00239        1 TLTVKIISARNLPKKDKKGKSDPYVKVSLDGDP---KEKKKTKVVKN-TLNPVWNETFEFEVPPPE----LAELEIEVYD   72 (101)
T ss_pred             CeEEEEEEeeCCCCCCCCCCCCceEEEEEeCCc---cceEeeeEecC-CCCCcccceEEEEecCcc----cCEEEEEEEe
Confidence            478999999999887766678999999998632   25789998877 579999999999997653    2589999999


Q ss_pred             cCCC-CCcceeEEEEeCcccccc
Q 021949           86 DGLL-GDKTVGEVIVPIKELLDS  107 (305)
Q Consensus        86 ~~~~-~d~~IG~~~vpL~~l~~~  107 (305)
                      ++.. .+.+||.+.++|.++...
T Consensus        73 ~~~~~~~~~~G~~~~~l~~~~~~   95 (101)
T smart00239       73 KDRFGRDDFIGQVTIPLSDLLLG   95 (101)
T ss_pred             cCCccCCceeEEEEEEHHHcccC
Confidence            9877 689999999999998753

Ca2+-binding motif present in phospholipases, protein kinases C, and synaptotamins (among others). Some do not appear to contain Ca2+-binding sites. Particular C2s appear to bind phospholipids, inositol polyphosphates, and intracellular proteins. Unusual occurrence in perforin. Synaptotagmin and PLC C2s are permuted in sequence with respect to N- and C-terminal beta strands. SMART detects C2 domains using one or both of two profiles.

>cd08374 C2F_Ferlin C2 domain sixth repeat in Ferlin

Probab=99.36  E-value=4.8e-12  Score=103.14  Aligned_cols=97  Identities=15%  Similarity=0.256  Sum_probs=78.4

Q ss_pred             eEEEEEEEecCCCC--CCCCCC--CCcEEEEEEecCCCCCCceEEeEecCCCCCC--CeeeceEEEEeccchh-------
Q 021949            6 ALDLNLISAKHLKD--VHLISK--MDVYAVVSISGDHTIKKQKVKSHVDRSGGSN--PTWNFPIKFTFNQSLA-------   72 (305)
Q Consensus         6 ~L~V~vvsA~dL~~--~~~~gk--~dpYv~v~l~~~~~~~~~~~kT~v~k~~~~n--P~Wne~f~f~v~~~~~-------   72 (305)
                      .|+|.|.+|+++..  .+..++  +|+||++++....   ..+++|.|+.+ ++|  |.||+.|.|++.....       
T Consensus         1 eLRViIw~~~~v~~~~~~~~g~~~sD~yVK~~L~~~~---~~kqkTDVHyr-slnG~~~FNwRfvF~~~~~~~~~~~~~~   76 (133)
T cd08374           1 ELRVIVWNTRDVLNDDTNITGEKMSDIYVKGWLDGLE---EDKQKTDVHYR-SLDGEGNFNWRFVFPFDYLPAEKKIVVI   76 (133)
T ss_pred             CEEEEEEECcCCcccccccCCccccCeEEEEEEccCc---ccccccceEEe-cCCCCcEEeEEEEEeeecCCccceeEEE
Confidence            48999999999554  334564  9999999998752   47899999988 788  9999999998766211       


Q ss_pred             ------------ccCceEEEEEEEecCCC-CCcceeEEEEeCccccc
Q 021949           73 ------------QQNRLTLDFKIKSDGLL-GDKTVGEVIVPIKELLD  106 (305)
Q Consensus        73 ------------~~~~~~L~v~V~d~~~~-~d~~IG~~~vpL~~l~~  106 (305)
                                  ......|+|+|||.+.+ .|++||++.++|..+..
T Consensus        77 ~~~~~~~~~~~e~~~~~~L~lqvwD~D~~s~dd~iG~~~l~l~~l~~  123 (133)
T cd08374          77 KKEHFWSLDETEYKIPPKLTLQVWDNDKFSPDDFLGSLELDLSILPR  123 (133)
T ss_pred             eeccccccCcceEecCcEEEEEEEECcccCCCCcceEEEEEhhhccc
Confidence                        12346899999999998 79999999999999875

Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen

>COG5038 Ca2+-dependent lipid-binding protein, contains C2 domain [General function prediction only]

Probab=99.34  E-value=6.6e-12  Score=129.12  Aligned_cols=128  Identities=22%  Similarity=0.307  Sum_probs=104.1

Q ss_pred             ccceEEEEEEEecCCCCCC--CCCCCCcEEEEEEecCCCCCCceEEeEecCCCCCCCeeeceEEEEeccchhccCceEEE
Q 021949            3 SYRALDLNLISAKHLKDVH--LISKMDVYAVVSISGDHTIKKQKVKSHVDRSGGSNPTWNFPIKFTFNQSLAQQNRLTLD   80 (305)
Q Consensus         3 ~~~~L~V~vvsA~dL~~~~--~~gk~dpYv~v~l~~~~~~~~~~~kT~v~k~~~~nP~Wne~f~f~v~~~~~~~~~~~L~   80 (305)
                      +.++|+|+|.+|++|+..+  ..++.|||+++.+..     ...-||++.++ +.||+|||+|-+.|....     ..|.
T Consensus       434 aIGVv~vkI~sa~~lk~~d~~i~~~vDpyit~~~~~-----r~~gkT~v~~n-t~nPvwNEt~Yi~lns~~-----d~L~  502 (1227)
T COG5038         434 AIGVVEVKIKSAEGLKKSDSTINGTVDPYITVTFSD-----RVIGKTRVKKN-TLNPVWNETFYILLNSFT-----DPLN  502 (1227)
T ss_pred             eeEEEEEEEeeccCcccccccccCCCCceEEEEecc-----ccCCccceeec-cCCccccceEEEEecccC-----Ccee
Confidence            4689999999999999887  458899999999776     35669999887 899999999999886543     4899


Q ss_pred             EEEEecCCC-CCcceeEEEEeCcccccccCCCCCCCCCcceEEEEEeecCCCCCccEEEEEEEEeccCCCCC
Q 021949           81 FKIKSDGLL-GDKTVGEVIVPIKELLDSSSSSSSGDAKSMKFVTYQVRSSSGKPKGELHFSYKFSEPTVGKT  151 (305)
Q Consensus        81 v~V~d~~~~-~d~~IG~~~vpL~~l~~~~~~~~~~~g~~~~~~~~~l~~~~g~~~G~l~lsl~~~~~~~~~~  151 (305)
                      |+|||.+.+ .|+++|++.++|..|..+.    .     .....+++++ +.+..|.|+++++|.+...++.
T Consensus       503 LslyD~n~~~sd~vvG~~~l~L~~L~~~~----~-----~~ne~~e~~~-~~k~vGrL~yDl~ffp~~e~k~  564 (1227)
T COG5038         503 LSLYDFNSFKSDKVVGSTQLDLALLHQNP----V-----KKNELYEFLR-NTKNVGRLTYDLRFFPVIEDKK  564 (1227)
T ss_pred             EEEEeccccCCcceeeeEEechHHhhhcc----c-----cccceeeeec-cCccceEEEEeeeeecccCCcc
Confidence            999997766 8999999999999998644    1     2233556654 5678999999999998765443

>KOG0169 consensus Phosphoinositide-specific phospholipase C [Signal transduction mechanisms]

Probab=99.32  E-value=1.2e-11  Score=122.96  Aligned_cols=122  Identities=20%  Similarity=0.328  Sum_probs=97.3

Q ss_pred             eEEEEEEEecCCCC-CCC--C-CCCCcEEEEEEecCCCCCCceEEeEecCCCCCCCeeeceEEEEeccchhccCceEEEE
Q 021949            6 ALDLNLISAKHLKD-VHL--I-SKMDVYAVVSISGDHTIKKQKVKSHVDRSGGSNPTWNFPIKFTFNQSLAQQNRLTLDF   81 (305)
Q Consensus         6 ~L~V~vvsA~dL~~-~~~--~-gk~dpYv~v~l~~~~~~~~~~~kT~v~k~~~~nP~Wne~f~f~v~~~~~~~~~~~L~v   81 (305)
                      +|.|+|++++++.. ...  + ...||||.|.|.+-+.. ..+.+|+++++++.||.|+|+|.|.|...++    ..|.|
T Consensus       617 tL~IkI~sGq~~~~~~~~~~~~~~~dP~v~VeI~Gvp~D-~~~~~Tk~v~~NgfnP~W~e~f~F~l~vPEL----AliRF  691 (746)
T KOG0169|consen  617 TLKIKIISGQGWLPDFGKTKFGEISDPDVYVEIAGVPAD-CAEQKTKVVKNNGFNPIWDEEFEFQLSVPEL----ALIRF  691 (746)
T ss_pred             eeEEEEEecCcccCCCCCCcccccCCCCEEEEEcccccc-hhhhhceeeccCCcCcccCCeEEEEEeccce----eEEEE
Confidence            79999999995533 221  2 45899999999875543 5789999888889999999999999987765    57999


Q ss_pred             EEEecCCC-CCcceeEEEEeCcccccccCCCCCCCCCcceEEEEEeecCCCC--CccEEEEEEEEec
Q 021949           82 KIKSDGLL-GDKTVGEVIVPIKELLDSSSSSSSGDAKSMKFVTYQVRSSSGK--PKGELHFSYKFSE  145 (305)
Q Consensus        82 ~V~d~~~~-~d~~IG~~~vpL~~l~~~~~~~~~~~g~~~~~~~~~l~~~~g~--~~G~l~lsl~~~~  145 (305)
                      +|+|.+.. .|+|+|+..+|+.+|.. +            .+.++|.+..|+  ..-+|.|.|++.+
T Consensus       692 ~V~d~d~~~~ddF~GQ~tlP~~~L~~-G------------yRhVpL~~~~G~~~~~asLfv~i~~~~  745 (746)
T KOG0169|consen  692 EVHDYDYIGKDDFIGQTTLPVSELRQ-G------------YRHVPLLSREGEALSSASLFVRIAIVE  745 (746)
T ss_pred             EEEecCCCCcccccceeeccHHHhhC-c------------eeeeeecCCCCccccceeEEEEEEEec
Confidence            99999988 69999999999999984 3            345677776665  4677888888765

>cd00030 C2 C2 domain

Probab=99.32  E-value=1.8e-11  Score=92.17  Aligned_cols=89  Identities=35%  Similarity=0.531  Sum_probs=76.4

Q ss_pred             EEEEEEEecCCCCCCCCCCCCcEEEEEEecCCCCCCceEEeEecCCCCCCCeeeceEEEEeccchhccCceEEEEEEEec
Q 021949            7 LDLNLISAKHLKDVHLISKMDVYAVVSISGDHTIKKQKVKSHVDRSGGSNPTWNFPIKFTFNQSLAQQNRLTLDFKIKSD   86 (305)
Q Consensus         7 L~V~vvsA~dL~~~~~~gk~dpYv~v~l~~~~~~~~~~~kT~v~k~~~~nP~Wne~f~f~v~~~~~~~~~~~L~v~V~d~   86 (305)
                      |.|+|++|++|.........++||++++..     ....+|++++. +.||.||+.|.|.+...    ....|.|+||++
T Consensus         1 l~v~i~~~~~l~~~~~~~~~~~~v~v~~~~-----~~~~~T~~~~~-~~~P~w~~~~~~~~~~~----~~~~l~i~v~~~   70 (102)
T cd00030           1 LRVTVIEARNLPAKDLNGKSDPYVKVSLGG-----KQKFKTKVVKN-TLNPVWNETFEFPVLDP----ESDTLTVEVWDK   70 (102)
T ss_pred             CEEEEEeeeCCCCcCCCCCCCcEEEEEecc-----CceEecceeCC-CCCCcccceEEEEccCC----CCCEEEEEEEec
Confidence            579999999998866667899999999986     26788988877 68999999999999763    125899999999


Q ss_pred             CCC-CCcceeEEEEeCcccc
Q 021949           87 GLL-GDKTVGEVIVPIKELL  105 (305)
Q Consensus        87 ~~~-~d~~IG~~~vpL~~l~  105 (305)
                      +.. .+++||++.+++.++.
T Consensus        71 ~~~~~~~~ig~~~~~l~~l~   90 (102)
T cd00030          71 DRFSKDDFLGEVEIPLSELL   90 (102)
T ss_pred             CCCCCCceeEEEEEeHHHhh
Confidence            877 5899999999999987

The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions.

>PLN02230 phosphoinositide phospholipase C 4

Probab=99.31  E-value=2.4e-11  Score=120.45  Aligned_cols=121  Identities=16%  Similarity=0.263  Sum_probs=92.0

Q ss_pred             cceEEEEEEEecCCC----C--CCCCCCCCcEEEEEEecCCCCCCceEEeEecCCCCCCCeeeceEEEEeccchhccCce
Q 021949            4 YRALDLNLISAKHLK----D--VHLISKMDVYAVVSISGDHTIKKQKVKSHVDRSGGSNPTWNFPIKFTFNQSLAQQNRL   77 (305)
Q Consensus         4 ~~~L~V~vvsA~dL~----~--~~~~gk~dpYv~v~l~~~~~~~~~~~kT~v~k~~~~nP~Wne~f~f~v~~~~~~~~~~   77 (305)
                      ..+|.|+|+++.++.    .  .+.++..|+||+|.|.+.+.+ ..+.+|+|..+ +.||.|||+|.|.+...++    .
T Consensus       468 ~~~L~V~VisGq~~~l~~~k~~~~~~s~~DpyV~Vei~Gvp~D-~~~~kT~v~~n-~~nP~Wneef~F~l~vPEL----A  541 (598)
T PLN02230        468 KKTLKVKVCMGDGWLLDFKKTHFDSYSPPDFFVRVGIAGAPVD-EVMEKTKIEYD-TWTPIWNKEFIFPLAVPEL----A  541 (598)
T ss_pred             CcEEEEEEEEccCccCCCccccCCCCCCCCceEEEEEEECCCC-CcccceeccCC-CCCCccCCeeEEEEEcCce----e
Confidence            367999999999763    1  122345799999999875433 35678887665 7999999999999876654    5


Q ss_pred             EEEEEEEecCCC-CCcceeEEEEeCcccccccCCCCCCCCCcceEEEEEeecCCCCC--ccEEEEEEEE
Q 021949           78 TLDFKIKSDGLL-GDKTVGEVIVPIKELLDSSSSSSSGDAKSMKFVTYQVRSSSGKP--KGELHFSYKF  143 (305)
Q Consensus        78 ~L~v~V~d~~~~-~d~~IG~~~vpL~~l~~~~~~~~~~~g~~~~~~~~~l~~~~g~~--~G~l~lsl~~  143 (305)
                      .|.|+|+|++.. +|+|||+..|||.+|.. +            .+.++|++..|..  .-+|.+.++|
T Consensus       542 llRf~V~d~d~~~~ddfiGQ~~lPv~~Lr~-G------------yR~V~L~~~~G~~l~~~~Ll~~f~~  597 (598)
T PLN02230        542 LLRVEVHEHDINEKDDFGGQTCLPVSEIRQ-G------------IHAVPLFNRKGVKYSSTRLLMRFEF  597 (598)
T ss_pred             EEEEEEEECCCCCCCCEEEEEEcchHHhhC-c------------cceEeccCCCcCCCCCCeeEEEEEe
Confidence            899999999886 89999999999999984 2            3456888776653  4456666655

>PLN02228 Phosphoinositide phospholipase C

Probab=99.30  E-value=5.1e-11  Score=117.58  Aligned_cols=124  Identities=17%  Similarity=0.251  Sum_probs=96.5

Q ss_pred             ceEEEEEEEecCCCC----C--CCCCCCCcEEEEEEecCCCCCCceEEeEecCCCCCCCee-eceEEEEeccchhccCce
Q 021949            5 RALDLNLISAKHLKD----V--HLISKMDVYAVVSISGDHTIKKQKVKSHVDRSGGSNPTW-NFPIKFTFNQSLAQQNRL   77 (305)
Q Consensus         5 ~~L~V~vvsA~dL~~----~--~~~gk~dpYv~v~l~~~~~~~~~~~kT~v~k~~~~nP~W-ne~f~f~v~~~~~~~~~~   77 (305)
                      .+|+|+|++++.|..    .  +.....|+||+|.+.+.+.. ..+++|+++++ +.||.| ||+|.|.+...++    .
T Consensus       431 ~~L~I~ViSGq~l~lp~~~~~~~~~~~~DpyV~Vei~G~p~D-~~~~rTk~~~n-~~nP~W~~e~f~F~~~~pEL----A  504 (567)
T PLN02228        431 TTLKVKIYTGEGWDLDFHLTHFDQYSPPDFFVKIGIAGVPRD-TVSYRTETAVD-QWFPIWGNDEFLFQLRVPEL----A  504 (567)
T ss_pred             ceEEEEEEECCccCCCCCCCCCCCCCCCCcEEEEEEEecCCC-CCcceeeccCC-CCCceECCCeEEEEEEcCce----e
Confidence            469999999998721    1  12345899999999875433 35789999877 589999 9999999876554    5


Q ss_pred             EEEEEEEecCCC-CCcceeEEEEeCcccccccCCCCCCCCCcceEEEEEeecCCCCC--ccEEEEEEEEeccC
Q 021949           78 TLDFKIKSDGLL-GDKTVGEVIVPIKELLDSSSSSSSGDAKSMKFVTYQVRSSSGKP--KGELHFSYKFSEPT  147 (305)
Q Consensus        78 ~L~v~V~d~~~~-~d~~IG~~~vpL~~l~~~~~~~~~~~g~~~~~~~~~l~~~~g~~--~G~l~lsl~~~~~~  147 (305)
                      .|.|.|+|++.. .|+|||+..|||..|.. +            .+.++|++..|+.  ..+|.+.+.+.+..
T Consensus       505 ~lRf~V~D~d~~~~d~figq~~lPv~~Lr~-G------------YR~VpL~~~~G~~l~~atLfv~~~~~~~~  564 (567)
T PLN02228        505 LLWFKVQDYDNDTQNDFAGQTCLPLPELKS-G------------VRAVRLHDRAGKAYKNTRLLVSFALDPPY  564 (567)
T ss_pred             EEEEEEEeCCCCCCCCEEEEEEcchhHhhC-C------------eeEEEccCCCCCCCCCeEEEEEEEEcCcc
Confidence            899999998866 78999999999999973 3            4567888877764  56788888887653

>PLN02222 phosphoinositide phospholipase C 2

Probab=99.28  E-value=5.9e-11  Score=117.43  Aligned_cols=121  Identities=17%  Similarity=0.242  Sum_probs=91.9

Q ss_pred             cceEEEEEEEecCCC----CC--CCCCCCCcEEEEEEecCCCCCCceEEeEecCCCCCCCeeeceEEEEeccchhccCce
Q 021949            4 YRALDLNLISAKHLK----DV--HLISKMDVYAVVSISGDHTIKKQKVKSHVDRSGGSNPTWNFPIKFTFNQSLAQQNRL   77 (305)
Q Consensus         4 ~~~L~V~vvsA~dL~----~~--~~~gk~dpYv~v~l~~~~~~~~~~~kT~v~k~~~~nP~Wne~f~f~v~~~~~~~~~~   77 (305)
                      ..+|.|+|+++.++.    ..  +.+...|+||+|.|.+-+.. ..+.+|+++++ +.||.|||+|.|.+...++    .
T Consensus       451 ~~~L~V~Visgq~~~l~~~~~~~~~~~~~dpyV~Vei~G~p~D-~~~~rTk~v~n-n~nP~W~e~f~F~i~~PeL----A  524 (581)
T PLN02222        451 KTTLRVTIYMGEGWYFDFRHTHFDQYSPPDFYTRVGIAGVPGD-TVMKKTKTLED-NWIPAWDEVFEFPLTVPEL----A  524 (581)
T ss_pred             cceEEEEEEEcccccCCCCccccCCCCCCCeeEEEEEeccCCC-cceeeeEecCC-CCCcccCCeeEEEEEcCce----e
Confidence            357999999998742    21  22356799999999864433 36779999988 4899999999998876554    5


Q ss_pred             EEEEEEEecCCC-CCcceeEEEEeCcccccccCCCCCCCCCcceEEEEEeecCCCCC--ccEEEEEEEE
Q 021949           78 TLDFKIKSDGLL-GDKTVGEVIVPIKELLDSSSSSSSGDAKSMKFVTYQVRSSSGKP--KGELHFSYKF  143 (305)
Q Consensus        78 ~L~v~V~d~~~~-~d~~IG~~~vpL~~l~~~~~~~~~~~g~~~~~~~~~l~~~~g~~--~G~l~lsl~~  143 (305)
                      .|.|+|+|++.. .|+|||+..|||..|.. +            .+.++|++..|..  .-+|.+.++|
T Consensus       525 llRf~V~d~D~~~~ddfigq~~lPv~~Lr~-G------------yR~V~L~~~~g~~l~~a~Lfv~~~~  580 (581)
T PLN02222        525 LLRLEVHEYDMSEKDDFGGQTCLPVWELSQ-G------------IRAFPLHSRKGEKYKSVKLLVKVEF  580 (581)
T ss_pred             EEEEEEEECCCCCCCcEEEEEEcchhhhhC-c------------cceEEccCCCcCCCCCeeEEEEEEe
Confidence            899999998876 78999999999999984 2            3466888776653  4466666665

>cd08689 C2_fungal_Pkc1p C2 domain found in protein kinase C (Pkc1p) in Saccharomyces cerevisiae

Probab=99.28  E-value=1.1e-11  Score=95.92  Aligned_cols=85  Identities=12%  Similarity=0.306  Sum_probs=72.4

Q ss_pred             EEEEEEEecCCCCCC---CCCCCCcEEEEEEecCCCCCCceEEeEecCCCCCCCeeeceEEEEeccchhccCceEEEEEE
Q 021949            7 LDLNLISAKHLKDVH---LISKMDVYAVVSISGDHTIKKQKVKSHVDRSGGSNPTWNFPIKFTFNQSLAQQNRLTLDFKI   83 (305)
Q Consensus         7 L~V~vvsA~dL~~~~---~~gk~dpYv~v~l~~~~~~~~~~~kT~v~k~~~~nP~Wne~f~f~v~~~~~~~~~~~L~v~V   83 (305)
                      |.|+|.+++||....   ++++.|+||++.++.     ..+.||++    ++|+.|||+|.|+|+..      .+|.|.|
T Consensus         1 L~I~V~~~RdvdH~~~~~~~~~~etyV~IKved-----~~kaRTr~----srnd~WnE~F~i~Vdk~------nEiel~V   65 (109)
T cd08689           1 LTITITSARDVDHIASPRFSKRPETYVSIKVED-----VERARTKP----SRNDRWNEDFEIPVEKN------NEEEVIV   65 (109)
T ss_pred             CEEEEEEEecCccccchhhccCCCcEEEEEECC-----EEEEeccC----CCCCcccceEEEEecCC------cEEEEEE
Confidence            689999999999877   568889999999987     46888887    47999999999999542      4899999


Q ss_pred             EecCCCCCcceeEEEEeCccccc
Q 021949           84 KSDGLLGDKTVGEVIVPIKELLD  106 (305)
Q Consensus        84 ~d~~~~~d~~IG~~~vpL~~l~~  106 (305)
                      ||+.......||...|.|.+|..
T Consensus        66 yDk~~~~~~Pi~llW~~~sdi~E   88 (109)
T cd08689          66 YDKGGDQPVPVGLLWLRLSDIAE   88 (109)
T ss_pred             EeCCCCeecceeeehhhHHHHHH
Confidence            99865555679999999999975

This family is named after the protein kinase C in Saccharomyces cerevisiae, Pkc1p. Protein kinase C is a member of a family of Ser/Thr phosphotransferases that are involved in many cellular signaling pathways. PKC has two antiparallel coiled-coiled regions (ACC finger domain) (AKA PKC homology region 1 (HR1)/ Rho binding domain) upstream of the C2 domain and two C1 domains downstream. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains, like those of PKC, are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that

>KOG1028 consensus Ca2+-dependent phospholipid-binding protein Synaptotagmin, required for synaptic vesicle and secretory granule exocytosis [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]

Probab=99.27  E-value=2.3e-11  Score=117.45  Aligned_cols=97  Identities=20%  Similarity=0.308  Sum_probs=83.9

Q ss_pred             ccceEEEEEEEecCCCCCCCCCCCCcEEEEEEecCCCCCCceEEeEecCCCCCCCeeeceEEEEeccchhccCceEEEEE
Q 021949            3 SYRALDLNLISAKHLKDVHLISKMDVYAVVSISGDHTIKKQKVKSHVDRSGGSNPTWNFPIKFTFNQSLAQQNRLTLDFK   82 (305)
Q Consensus         3 ~~~~L~V~vvsA~dL~~~~~~gk~dpYv~v~l~~~~~~~~~~~kT~v~k~~~~nP~Wne~f~f~v~~~~~~~~~~~L~v~   82 (305)
                      ..+.|+|.|++|++|+..+..+..|+||++++.... +...++||.+.++ +.||+|||+|.|.|....+.  +..|.|+
T Consensus       296 ~~g~ltv~v~kar~L~~~~~~~~~d~~Vk~~l~~~~-~~~~kkkT~~~~~-~~npv~nesf~F~vp~~~l~--~~~l~l~  371 (421)
T KOG1028|consen  296 TAGRLTVVVIKARNLKSMDVGGLSDPYVKVTLLDGD-KRLSKKKTSVKKK-TLNPVFNETFVFDVPPEQLA--EVSLELT  371 (421)
T ss_pred             CCCeEEEEEEEecCCCcccCCCCCCccEEEEEecCC-ceeeeeeeecccC-CCCCcccccEEEeCCHHHhh--eeEEEEE
Confidence            458899999999999999888999999999988765 4467899998777 89999999999999876653  3689999


Q ss_pred             EEecCCC-CCcceeEEEEeCcc
Q 021949           83 IKSDGLL-GDKTVGEVIVPIKE  103 (305)
Q Consensus        83 V~d~~~~-~d~~IG~~~vpL~~  103 (305)
                      |||++.+ .+++||++.+-...
T Consensus       372 V~d~d~~~~~~~iG~~~lG~~~  393 (421)
T KOG1028|consen  372 VWDHDTLGSNDLIGRCILGSDS  393 (421)
T ss_pred             EEEcccccccceeeEEEecCCC
Confidence            9999998 77899999887664

>COG5038 Ca2+-dependent lipid-binding protein, contains C2 domain [General function prediction only]

Probab=99.17  E-value=7.9e-11  Score=121.34  Aligned_cols=126  Identities=15%  Similarity=0.163  Sum_probs=101.3

Q ss_pred             ccceEEEEEEEecCCCCCCCCCCCCcEEEEEEecCCCCCCceEEeEecCCCCCCCeeeceEEEEeccchhccCceEEEEE
Q 021949            3 SYRALDLNLISAKHLKDVHLISKMDVYAVVSISGDHTIKKQKVKSHVDRSGGSNPTWNFPIKFTFNQSLAQQNRLTLDFK   82 (305)
Q Consensus         3 ~~~~L~V~vvsA~dL~~~~~~gk~dpYv~v~l~~~~~~~~~~~kT~v~k~~~~nP~Wne~f~f~v~~~~~~~~~~~L~v~   82 (305)
                      ..+.|+|.+.++.+|+..+..+.+||||++.+..     ...++|+++|+ ++||+|||+|.++|.+...    ..|.|.
T Consensus      1038 nsG~l~I~~~~~~nl~~~d~ng~sDpfv~~~ln~-----k~vyktkv~Kk-tlNPvwNEe~~i~v~~r~~----D~~~i~ 1107 (1227)
T COG5038        1038 NSGYLTIMLRSGENLPSSDENGYSDPFVKLFLNE-----KSVYKTKVVKK-TLNPVWNEEFTIEVLNRVK----DVLTIN 1107 (1227)
T ss_pred             ccCcEEEEEeccCCCcccccCCCCCceEEEEecc-----eecccccchhc-cCCCCccccceEeeecccc----ceEEEE
Confidence            3678999999999999999999999999999987     36899999998 8999999999999976543    378999


Q ss_pred             EEecCCC-CCcceeEEEEeCcccccccCCCCCCCCCcceEEEEEeecC-CCCCccEEEEEEEEeccCC
Q 021949           83 IKSDGLL-GDKTVGEVIVPIKELLDSSSSSSSGDAKSMKFVTYQVRSS-SGKPKGELHFSYKFSEPTV  148 (305)
Q Consensus        83 V~d~~~~-~d~~IG~~~vpL~~l~~~~~~~~~~~g~~~~~~~~~l~~~-~g~~~G~l~lsl~~~~~~~  148 (305)
                      |+||+.. ++++||.+.++|..|..+.      .    ....+.|..+ .....|++++.+.|..+..
T Consensus      1108 v~Dwd~~~knd~lg~~~idL~~l~~~~------~----~n~~i~ldgk~~~~~~g~~~~~~~~r~~~~ 1165 (1227)
T COG5038        1108 VNDWDSGEKNDLLGTAEIDLSKLEPGG------T----TNSNIPLDGKTFIVLDGTLHPGFNFRSKYA 1165 (1227)
T ss_pred             EeecccCCCccccccccccHhhcCcCC------c----cceeeeccCcceEecccEeecceecchhhh
Confidence            9999887 8899999999999998644      1    1222333322 2356788888888887755

>KOG1264 consensus Phospholipase C [Lipid transport and metabolism]

Probab=99.04  E-value=1.6e-09  Score=107.93  Aligned_cols=126  Identities=18%  Similarity=0.279  Sum_probs=96.2

Q ss_pred             ceEEEEEEEecCCCCCCCCCCCCcEEEEEEecCCCCCCceEEeEecCCCCCCCeee-ceEEEEeccchhccCceEEEEEE
Q 021949            5 RALDLNLISAKHLKDVHLISKMDVYAVVSISGDHTIKKQKVKSHVDRSGGSNPTWN-FPIKFTFNQSLAQQNRLTLDFKI   83 (305)
Q Consensus         5 ~~L~V~vvsA~dL~~~~~~gk~dpYv~v~l~~~~~~~~~~~kT~v~k~~~~nP~Wn-e~f~f~v~~~~~~~~~~~L~v~V   83 (305)
                      -+|.|.|+.||.|.+.+ .+-..|||+|.|.+...+ ..+++|+++.++++||+|| |+|+|+|.+...    ..|.|.|
T Consensus      1065 ~~lsv~vigaRHL~k~g-r~i~cPfVevEiiGa~~D-t~~~~t~~V~dNGlnPiWn~e~ftFeI~nPe~----A~lRF~V 1138 (1267)
T KOG1264|consen 1065 MTLSVKVLGARHLPKLG-RSIACPFVEVEIIGAEYD-TNKFKTTVVNDNGLNPIWNPEKFTFEIYNPEF----AFLRFVV 1138 (1267)
T ss_pred             eEEEEEEeeccccccCC-CCccCCcEEEEEeccccC-CCceEEEEeccCCCCCCCCCcceEEEeeCCce----EEEEEEE
Confidence            46889999999998554 234569999999887665 4566666666669999999 999999987765    6899999


Q ss_pred             EecCCC-CCcceeEEEEeCcccccccCCCCCCCCCcceEEEEEeecC--CCCCccEEEEEEEEeccCCC
Q 021949           84 KSDGLL-GDKTVGEVIVPIKELLDSSSSSSSGDAKSMKFVTYQVRSS--SGKPKGELHFSYKFSEPTVG  149 (305)
Q Consensus        84 ~d~~~~-~d~~IG~~~vpL~~l~~~~~~~~~~~g~~~~~~~~~l~~~--~g~~~G~l~lsl~~~~~~~~  149 (305)
                      ++++.+ ...||+++..|+..|.. +            .++..|+..  +.-.-.+|.|.|++.+....
T Consensus      1139 ~eeDmfs~~~FiaqA~yPv~~ik~-G------------fRsVpLkN~ySEdlELaSLLv~i~m~~~~~~ 1194 (1267)
T KOG1264|consen 1139 YEEDMFSDPNFLAQATYPVKAIKS-G------------FRSVPLKNGYSEDLELASLLVFIEMRPVLES 1194 (1267)
T ss_pred             ecccccCCcceeeeeecchhhhhc-c------------ceeeecccCchhhhhhhhheeeeEeccccCc
Confidence            999999 45699999999999874 2            345566653  12245667788888776553

>KOG1328 consensus Synaptic vesicle protein BAIAP3, involved in vesicle priming/regulation [Intracellular trafficking, secretion, and vesicular transport; Signal transduction mechanisms]

Probab=98.98  E-value=1.1e-10  Score=114.85  Aligned_cols=129  Identities=19%  Similarity=0.293  Sum_probs=95.1

Q ss_pred             EEEEEEEecCCCCCCCCCCCCcEEEEEEecCCCC-------------------------CCceEEeEecCCCCCCCeeec
Q 021949            7 LDLNLISAKHLKDVHLISKMDVYAVVSISGDHTI-------------------------KKQKVKSHVDRSGGSNPTWNF   61 (305)
Q Consensus         7 L~V~vvsA~dL~~~~~~gk~dpYv~v~l~~~~~~-------------------------~~~~~kT~v~k~~~~nP~Wne   61 (305)
                      |.|.+.+|+||.+++..|.+|||+.+.+.....+                         .+-.+-|.|.+. |+||.|+|
T Consensus       116 l~is~~~ak~l~akd~ngfSdP~~m~g~~p~~~~~~~pra~~eqrdgl~~~~~~~GpiPAKlIkatsvk~~-TLnPkW~E  194 (1103)
T KOG1328|consen  116 LNISLLEAKDLIAKDVNGFSDPFAMMGVVPGTRKENSPRALHEQRDGLMHRFQDTGPIPAKLIKATSVKKK-TLNPKWSE  194 (1103)
T ss_pred             HHHHHHHhcCccccCCCCCCChhhhhccccccccccChhhhhhhhhhhhhccccCCCCcHHHhhhcccccc-cCCcchhh
Confidence            4566788999999988899999999877432110                         012244666655 99999999


Q ss_pred             eEEEEeccchhccCceEEEEEEEecCC---------------------------------C----CCcceeEEEEeCccc
Q 021949           62 PIKFTFNQSLAQQNRLTLDFKIKSDGL---------------------------------L----GDKTVGEVIVPIKEL  104 (305)
Q Consensus        62 ~f~f~v~~~~~~~~~~~L~v~V~d~~~---------------------------------~----~d~~IG~~~vpL~~l  104 (305)
                      +|.|+|.+-.    +..+++.|||++.                                 .    .|||+|.+.|+|.||
T Consensus       195 kF~F~IeDv~----tDqfHlDIWDHDDe~sv~dAvs~LNeV~G~kG~GRyFKqv~qSARans~d~tDDFLGciNipl~Ei  270 (1103)
T KOG1328|consen  195 KFQFTIEDVQ----TDQFHLDIWDHDDEESVLDAVSSLNEVTGFKGIGRYFKQVTQSARANSDDCTDDFLGCINIPLAEI  270 (1103)
T ss_pred             heeeehhccc----cceeeeecccCCccHHHHHHHHHHhhhhcchhHHHHHHHHHHHHhcCCCccccccccccccchhcC
Confidence            9999997653    2489999999864                                 1    378999999999999


Q ss_pred             ccccCCCCCCCCCcceEEEEEeecCCCCCccEEEEEEEEeccCCC
Q 021949          105 LDSSSSSSSGDAKSMKFVTYQVRSSSGKPKGELHFSYKFSEPTVG  149 (305)
Q Consensus       105 ~~~~~~~~~~~g~~~~~~~~~l~~~~g~~~G~l~lsl~~~~~~~~  149 (305)
                      -..+      -   .+|..++.|....++.|.++|.+++..+...
T Consensus       271 P~~G------l---d~WFkLepRS~~S~VqG~~~LklwLsT~e~~  306 (1103)
T KOG1328|consen  271 PPDG------L---DQWFKLEPRSDKSKVQGQVKLKLWLSTKEEG  306 (1103)
T ss_pred             Ccch------H---HHHhccCcccccccccceEEEEEEEeeeccc
Confidence            8644      1   1344445555567899999999999876543

>KOG1031 consensus Predicted Ca2+-dependent phospholipid-binding protein [General function prediction only]

Probab=98.98  E-value=1.6e-09  Score=104.69  Aligned_cols=130  Identities=18%  Similarity=0.286  Sum_probs=103.3

Q ss_pred             cceEEEEEEEecCCCCCCCC-CCCCcEEEEEEecCCCCCCceEEeEecCCCCCCCeeece-EEEEeccchhccCceEEEE
Q 021949            4 YRALDLNLISAKHLKDVHLI-SKMDVYAVVSISGDHTIKKQKVKSHVDRSGGSNPTWNFP-IKFTFNQSLAQQNRLTLDF   81 (305)
Q Consensus         4 ~~~L~V~vvsA~dL~~~~~~-gk~dpYv~v~l~~~~~~~~~~~kT~v~k~~~~nP~Wne~-f~f~v~~~~~~~~~~~L~v   81 (305)
                      -++|.|+|..+|+|...+.. ...|.||++.+.+      ..+||.|-.+ ++||.||.. |+|+|++.++++  ..|.|
T Consensus         2 pgkl~vki~a~r~lpvmdkasd~tdafveik~~n------~t~ktdvf~k-slnp~wnsdwfkfevddadlqd--eplqi   72 (1169)
T KOG1031|consen    2 PGKLGVKIKAARHLPVMDKASDLTDAFVEIKFAN------TTFKTDVFLK-SLNPQWNSDWFKFEVDDADLQD--EPLQI   72 (1169)
T ss_pred             CCcceeEEEeccCCcccccccccchheeEEEecc------cceehhhhhh-hcCCcccccceEEecChhhhcc--CCeeE
Confidence            36799999999999988765 4579999999987      7899999887 799999954 899999887765  58999


Q ss_pred             EEEecCCC-CCcceeEEEEeCccccccc-CCCCCCCCCcceEEEEEeecCCCCCccEEEEEEEE
Q 021949           82 KIKSDGLL-GDKTVGEVIVPIKELLDSS-SSSSSGDAKSMKFVTYQVRSSSGKPKGELHFSYKF  143 (305)
Q Consensus        82 ~V~d~~~~-~d~~IG~~~vpL~~l~~~~-~~~~~~~g~~~~~~~~~l~~~~g~~~G~l~lsl~~  143 (305)
                      .+.|++.. .++-||.+.|+|+.|.... ..+..+.| .....|+.+.+.--..+|+|++-+++
T Consensus        73 ~lld~dtysandaigkv~i~idpl~~e~aaqavhgkg-tvisgw~pifdtihgirgeinvivkv  135 (1169)
T KOG1031|consen   73 RLLDHDTYSANDAIGKVNIDIDPLCLEEAAQAVHGKG-TVISGWFPIFDTIHGIRGEINVIVKV  135 (1169)
T ss_pred             EEecccccccccccceeeeccChHHHHhHHhhhcCCc-eEEeeeeecceecccccceeEEEEEE
Confidence            99999988 7889999999999885432 11222333 24477999987555578999888775

>KOG1328 consensus Synaptic vesicle protein BAIAP3, involved in vesicle priming/regulation [Intracellular trafficking, secretion, and vesicular transport; Signal transduction mechanisms]

Probab=98.92  E-value=3.6e-10  Score=111.35  Aligned_cols=102  Identities=15%  Similarity=0.244  Sum_probs=87.0

Q ss_pred             ccceEEEEEEEecCCCCCCCCCCCCcEEEEEEecCCC-CCCceEEeEecCCCCCCCeeeceEEEEeccchhccCceEEEE
Q 021949            3 SYRALDLNLISAKHLKDVHLISKMDVYAVVSISGDHT-IKKQKVKSHVDRSGGSNPTWNFPIKFTFNQSLAQQNRLTLDF   81 (305)
Q Consensus         3 ~~~~L~V~vvsA~dL~~~~~~gk~dpYv~v~l~~~~~-~~~~~~kT~v~k~~~~nP~Wne~f~f~v~~~~~~~~~~~L~v   81 (305)
                      +..+|.|.|+.|+|+...+.+|.+||||+|.+..... --...++|+|++. ++||+|+|+|.|.|+.+....+...|.|
T Consensus       945 n~q~L~veVlhA~diipLD~NGlSDPFVviEl~P~~~fp~v~~q~T~V~~r-tLnPVfDE~FeFsVp~e~c~te~Am~~F 1023 (1103)
T KOG1328|consen  945 NAQTLVVEVLHAKDIIPLDSNGLSDPFVVIELIPKFRFPAVPVQKTKVVSR-TLNPVFDETFEFSVPPEPCSTETAMLHF 1023 (1103)
T ss_pred             cccchhhhhhccccccccCCCCCCCCeEEEEeccccccccchhhhhhhhhc-cccchhhhheeeecCccccccccceEEE
Confidence            4578899999999999999999999999999986321 1135789999888 8999999999999987765445678999


Q ss_pred             EEEecCCC-CCcceeEEEEeCcccc
Q 021949           82 KIKSDGLL-GDKTVGEVIVPIKELL  105 (305)
Q Consensus        82 ~V~d~~~~-~d~~IG~~~vpL~~l~  105 (305)
                      +|+|++-+ .+||-|++.+-|.++.
T Consensus      1024 TVMDHD~L~sNDFaGEA~L~Lg~vp 1048 (1103)
T KOG1328|consen 1024 TVMDHDYLRSNDFAGEAFLELGDVP 1048 (1103)
T ss_pred             EeeccceecccccchHHHHhhCCCC
Confidence            99999988 8999999999999885

>PLN02352 phospholipase D epsilon

Probab=98.91  E-value=1.1e-08  Score=103.56  Aligned_cols=120  Identities=16%  Similarity=0.279  Sum_probs=91.3

Q ss_pred             cceEEEEEEEecCCCCC----CCC-CCCCcEEEEEEecCCCCCCceEEeEecCCCCCCCeeeceEEEEeccchhccCceE
Q 021949            4 YRALDLNLISAKHLKDV----HLI-SKMDVYAVVSISGDHTIKKQKVKSHVDRSGGSNPTWNFPIKFTFNQSLAQQNRLT   78 (305)
Q Consensus         4 ~~~L~V~vvsA~dL~~~----~~~-gk~dpYv~v~l~~~~~~~~~~~kT~v~k~~~~nP~Wne~f~f~v~~~~~~~~~~~   78 (305)
                      +++|+|||.+|+-+...    ... ...|+||+|.+.+     .+..||   ++ ..||.|||+|.+.+.....    ..
T Consensus         9 hg~l~~~i~~~~~~~~~~~~~~~~~~~~~~y~tv~~~~-----~~v~rt---~~-~~~p~w~e~f~i~~ah~~~----~~   75 (758)
T PLN02352          9 HGTLEATIFDATPYTPPFPFNCIFLNGKATYVTIKIGN-----KKVAKT---SH-EYDRVWNQTFQILCAHPLD----ST   75 (758)
T ss_pred             ccceEEEEEEeeehhhcccccccccCCCCceEEEEeCC-----cEEecC---CC-CCCCccccceeEEeeeecC----Cc
Confidence            68999999999854332    111 1229999999987     467788   34 5699999999999976541    36


Q ss_pred             EEEEEEecCCCCCcceeEEEEeCcccccccCCCCCCCCCcceEEEEEeecCCCCC-c-cEEEEEEEEeccCCC
Q 021949           79 LDFKIKSDGLLGDKTVGEVIVPIKELLDSSSSSSSGDAKSMKFVTYQVRSSSGKP-K-GELHFSYKFSEPTVG  149 (305)
Q Consensus        79 L~v~V~d~~~~~d~~IG~~~vpL~~l~~~~~~~~~~~g~~~~~~~~~l~~~~g~~-~-G~l~lsl~~~~~~~~  149 (305)
                      |+|.|+|    +..+||.+.||+.+|+...         +....|+++...++++ . .+|+|+++|.+...+
T Consensus        76 ~~f~vk~----~~~~ig~~~~p~~~~~~g~---------~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~  135 (758)
T PLN02352         76 ITITLKT----KCSILGRFHIQAHQIVTEA---------SFINGFFPLIMENGKPNPELKLRFMLWFRPAELE  135 (758)
T ss_pred             EEEEEec----CCeEEEEEEEEHHHhhCCC---------cccceEEEcccCCCCCCCCCEEEEEEEEEEhhhC
Confidence            8999988    4679999999999998643         1247799999877764 3 489999999987653

>KOG3837 consensus Uncharacterized conserved protein, contains DM14 and C2 domains [General function prediction only]

Probab=98.65  E-value=1.7e-08  Score=94.25  Aligned_cols=133  Identities=16%  Similarity=0.241  Sum_probs=99.5

Q ss_pred             ceEEEEEEEecCCCCCCCCCCCCcEEEEEEecCCCCCCceEEeEecCCCCCCCeeeceEEEEeccch---h----ccCce
Q 021949            5 RALDLNLISAKHLKDVHLISKMDVYAVVSISGDHTIKKQKVKSHVDRSGGSNPTWNFPIKFTFNQSL---A----QQNRL   77 (305)
Q Consensus         5 ~~L~V~vvsA~dL~~~~~~gk~dpYv~v~l~~~~~~~~~~~kT~v~k~~~~nP~Wne~f~f~v~~~~---~----~~~~~   77 (305)
                      ..|+++|+++.++...+---..|-|+.+.+.-.. +...+.+|.|+++ +.+|.|+|.|.+.+....   .    ...+.
T Consensus       367 ~elel~ivrg~~~pvp~gp~hld~fvr~efpl~n-D~~qk~kt~vik~-t~SPdfde~fklni~rg~~~nr~fqR~fkr~  444 (523)
T KOG3837|consen  367 QELELAIVRGQKNPVPGGPMHLDQFVRLEFPLEN-DSRQKLKTDVIKV-TPSPDFDEDFKLNIRRGPGLNREFQRRFKRL  444 (523)
T ss_pred             hHhHHHHhhcccCCCCCCchhHHhhhcccccccc-cccccCccceeeC-CCCCCcccceeeeccCCCcccHHHHHHHHhc
Confidence            4577888888887654422235678888765332 2257899999998 899999999999986611   1    11246


Q ss_pred             EEEEEEEecCCC--CCcceeEEEEeCcccccccCCCCCCCCCcceEEEEEeecCCCCCccEEEEEEEEeccCCC
Q 021949           78 TLDFKIKSDGLL--GDKTVGEVIVPIKELLDSSSSSSSGDAKSMKFVTYQVRSSSGKPKGELHFSYKFSEPTVG  149 (305)
Q Consensus        78 ~L~v~V~d~~~~--~d~~IG~~~vpL~~l~~~~~~~~~~~g~~~~~~~~~l~~~~g~~~G~l~lsl~~~~~~~~  149 (305)
                      .++|+||++..|  +|+|+|.+.|.|..|.+.-         ++ ...|.|.+......|+|.++|+++....+
T Consensus       445 g~kfeifhkggf~rSdkl~gt~nikle~Len~c---------ei-~e~~~l~DGRK~vGGkLevKvRiR~Pi~~  508 (523)
T KOG3837|consen  445 GKKFEIFHKGGFNRSDKLTGTGNIKLEILENMC---------EI-CEYLPLKDGRKAVGGKLEVKVRIRQPIGD  508 (523)
T ss_pred             CeeEEEeeccccccccceeceeeeeehhhhccc---------ch-hhceeccccccccCCeeEEEEEEecccch
Confidence            799999999877  7999999999999887533         22 55678877656678999999999987654

>KOG0905 consensus Phosphoinositide 3-kinase [Signal transduction mechanisms]

Probab=98.60  E-value=3.8e-08  Score=101.56  Aligned_cols=112  Identities=23%  Similarity=0.255  Sum_probs=89.5

Q ss_pred             ccceEEEEEEEecCCCCCCCCCCCCcEEEEEEecCCCCCCceEEeEecCCCCCCCeeeceEEEE-eccchhccCceEEEE
Q 021949            3 SYRALDLNLISAKHLKDVHLISKMDVYAVVSISGDHTIKKQKVKSHVDRSGGSNPTWNFPIKFT-FNQSLAQQNRLTLDF   81 (305)
Q Consensus         3 ~~~~L~V~vvsA~dL~~~~~~gk~dpYv~v~l~~~~~~~~~~~kT~v~k~~~~nP~Wne~f~f~-v~~~~~~~~~~~L~v   81 (305)
                      .+++|.|.|..+++|....-....||||++++..+..+ ..|+||+|+++ ++||+|||.+... ++...+..  .+|.+
T Consensus      1522 ~~~~LtImV~H~K~L~~Lqdg~~P~pyVK~YLlPdp~k-~sKRKTKvvrk-t~~PTfnE~LvY~g~p~~~l~q--ReLQ~ 1597 (1639)
T KOG0905|consen 1522 NNGTLTIMVMHAKGLALLQDGQDPDPYVKTYLLPDPRK-TSKRKTKVVRK-TRNPTFNEMLVYDGFPKEILQQ--RELQV 1597 (1639)
T ss_pred             cCceEEEEhhhhcccccccCCCCCCcceeEEecCCchH-hhhhhhccccc-cCCCchhhheeecCCchhhhhh--heeee
Confidence            35789999999999965444567899999999988765 57899999998 8999999999887 44444432  58999


Q ss_pred             EEEecCCC-CCcceeEEEEeCcccccccCCCCCCCCCcceEEEEEeec
Q 021949           82 KIKSDGLL-GDKTVGEVIVPIKELLDSSSSSSSGDAKSMKFVTYQVRS  128 (305)
Q Consensus        82 ~V~d~~~~-~d~~IG~~~vpL~~l~~~~~~~~~~~g~~~~~~~~~l~~  128 (305)
                      .||....+ .+.|+|.+.|+|.++....          ....||.|-.
T Consensus      1598 sVls~~~~~en~~lg~v~i~L~~~~l~k----------E~~~Wy~lg~ 1635 (1639)
T KOG0905|consen 1598 SVLSNGGLLENVFLGGVNIPLLKVDLLK----------ESVGWYNLGA 1635 (1639)
T ss_pred             eeecccceeeeeeeeeeecchhhcchhh----------hhcceeeccc
Confidence            99998887 7889999999999986533          1357888753

>KOG2059 consensus Ras GTPase-activating protein [Signal transduction mechanisms]

Probab=98.53  E-value=1.9e-07  Score=92.44  Aligned_cols=113  Identities=23%  Similarity=0.383  Sum_probs=82.0

Q ss_pred             CCCCCcEEEEEEecCCCCCCceEEeEecCCCCCCCeeeceEEEEeccch-----------hccCceEEEEEEEecC-CC-
Q 021949           23 ISKMDVYAVVSISGDHTIKKQKVKSHVDRSGGSNPTWNFPIKFTFNQSL-----------AQQNRLTLDFKIKSDG-LL-   89 (305)
Q Consensus        23 ~gk~dpYv~v~l~~~~~~~~~~~kT~v~k~~~~nP~Wne~f~f~v~~~~-----------~~~~~~~L~v~V~d~~-~~-   89 (305)
                      ++.+|||+++...+..-  ....+|++.+. +.+|.|||.|.|.+...+           .+.....|+|++|++. .. 
T Consensus       148 ~~~~dp~~~v~~~g~~~--~~~~~T~~~kk-t~~p~~~Ev~~f~~~~~~~~s~ks~~~~~~e~~~l~irv~lW~~~~~~~  224 (800)
T KOG2059|consen  148 NGQCDPFARVTLCGPSK--LKEKKTKVKKK-TTNPQFDEVFYFEVTREESYSKKSLFMPEEEDDMLEIRVDLWNDLNLVI  224 (800)
T ss_pred             CCCCCcceEEeecccch--hhccccceeee-ccCcchhhheeeeeccccccccchhcCcccCCceeeEEEeeccchhhhh
Confidence            35699999999876331  23478988888 899999999999987651           1112478999999954 34 


Q ss_pred             CCcceeEEEEeCcccccccCCCCCCCCCcceEEEEEeecC-------CCCCccEEEEEEEEeccCC
Q 021949           90 GDKTVGEVIVPIKELLDSSSSSSSGDAKSMKFVTYQVRSS-------SGKPKGELHFSYKFSEPTV  148 (305)
Q Consensus        90 ~d~~IG~~~vpL~~l~~~~~~~~~~~g~~~~~~~~~l~~~-------~g~~~G~l~lsl~~~~~~~  148 (305)
                      ++.|+|+++|++..+....     +     ...||.|+..       ++..-|.+++.+++.+.-.
T Consensus       225 ~~~FlGevrv~v~~~~~~s-----~-----p~~W~~Lqp~~~g~~~~~~~~lGslrl~v~y~~D~V  280 (800)
T KOG2059|consen  225 NDVFLGEVRVPVDVLRQKS-----S-----PAAWYYLQPRPNGEKSSDGGDLGSLRLNVTYTEDHV  280 (800)
T ss_pred             hhhhceeEEeehhhhhhcc-----C-----ccceEEEecCCCcccCCCCCCccceeeeEEeeecee
Confidence            6899999999999987322     1     2446666642       2335789999999988643

>cd08683 C2_C2cd3 C2 domain found in C2 calcium-dependent domain containing 3 (C2cd3) proteins

Probab=98.47  E-value=4.4e-07  Score=72.65  Aligned_cols=99  Identities=18%  Similarity=0.284  Sum_probs=71.9

Q ss_pred             EEEEEEEecCCCCC---------CCC----CCCCcEEEEEEecCCCCCCceEEeEecCCCCCCCeeeceEEEEec-----
Q 021949            7 LDLNLISAKHLKDV---------HLI----SKMDVYAVVSISGDHTIKKQKVKSHVDRSGGSNPTWNFPIKFTFN-----   68 (305)
Q Consensus         7 L~V~vvsA~dL~~~---------~~~----gk~dpYv~v~l~~~~~~~~~~~kT~v~k~~~~nP~Wne~f~f~v~-----   68 (305)
                      |.|.|++|.+|+..         ++.    --.|.||++.+..-+.  ....+|+++.+ +..|+||..++|.++     
T Consensus         1 lsv~I~RA~GLqaAA~~la~~~~~l~y~a~VGVN~yv~i~lSFl~~--~e~r~TrtVAr-SFcPeF~Hh~Efpc~lv~~~   77 (143)
T cd08683           1 LSVQIHRASGLQAAARALAEQDPSLQYSATVGVNSYVTIHLSFLPE--KELRRTRTVAR-SFCPEFNHHVEFPCNLVVQR   77 (143)
T ss_pred             CeEEeehhhhHHHHHHHHhhhCcccccceecccceEEEEEeccCCC--Cceeeccchhh-hcCCCccceEEEecccEEEc
Confidence            57889999988631         111    1268999999765322  37888999887 899999999999886     


Q ss_pred             ---c---chhccCceEEEEEEEecCCC-----------CCcceeEEEEeCccccccc
Q 021949           69 ---Q---SLAQQNRLTLDFKIKSDGLL-----------GDKTVGEVIVPIKELLDSS  108 (305)
Q Consensus        69 ---~---~~~~~~~~~L~v~V~d~~~~-----------~d~~IG~~~vpL~~l~~~~  108 (305)
                         +   ........+|.|+||+++.-           +|-+||.+.|||.+|+...
T Consensus        78 ~~Ge~~sLAElLe~~eiil~vwHr~~~s~~~~~~~~~~~DilLG~v~IPl~~Ll~~r  134 (143)
T cd08683          78 NSGEAISLAELLESAEIILEVWHRNPKSAGDTIKIETSGDILLGTVKIPLRDLLTKR  134 (143)
T ss_pred             CCCccccHHHHhhcceEEeeeeecCCccccceeccCcCCcEEEEEEEeeHHHHhhcc
Confidence               1   11112346899999997532           4558999999999999755

C2cd3 is a novel C2 domain-containing protein specific to vertebrates. C2cd3 functions in regulator of cilia formation, Hedgehog signaling, and mouse embryonic development. Mutations in C2cd3 mice resulted in lethality in some cases and exencephaly, a twisted body axis, and pericardial edema in others. The presence of calcium-dependent lipid-binding domains in C2cd3 suggests a potential role in vesicular transport. C2cd3 is also an interesting candidate for ciliopathy because of its orthology to certain cilia-related genetic disease loci on chromosome. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances inc

>KOG1013 consensus Synaptic vesicle protein rabphilin-3A [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.44  E-value=3.2e-08  Score=90.26  Aligned_cols=136  Identities=18%  Similarity=0.214  Sum_probs=96.7

Q ss_pred             ccceEEEEEEEecCCCCCCCCCCCCcEEEEEEecCCCCCCceEEeEecCCCCCCCeeeceEEEEe-ccchhccCceEEEE
Q 021949            3 SYRALDLNLISAKHLKDVHLISKMDVYAVVSISGDHTIKKQKVKSHVDRSGGSNPTWNFPIKFTF-NQSLAQQNRLTLDF   81 (305)
Q Consensus         3 ~~~~L~V~vvsA~dL~~~~~~gk~dpYv~v~l~~~~~~~~~~~kT~v~k~~~~nP~Wne~f~f~v-~~~~~~~~~~~L~v   81 (305)
                      +.+.+.++|.+|++|+..+..+..|+|+.+.+.....+ ..+.+|++..+ +.|++|||+..... ..+...+  ..+.+
T Consensus        91 ~~~~~~~tl~~a~~lk~~~~~~~~d~~~~~~llpga~k-l~slr~~t~~n-~lN~~w~etev~~~i~~~~~~~--K~~Rk  166 (362)
T KOG1013|consen   91 ESRMLDTTLDRAKGLKPMDINGLADPYVKLHLLPGAGK-LNSLRTKTTRN-TLNPEWNETEVYEGITDDDTHL--KVLRK  166 (362)
T ss_pred             hhhhcceeechhcccchhhhhhhcchHHhhhcccchhh-hhhhhHHhhcc-CcCcceeccceecccccchhhh--hhhhe
Confidence            56789999999999999999999999999998764333 34688888777 89999999876542 2333322  36778


Q ss_pred             EEEecCCC-CCcceeEEEEeCcccccccCCCCCCCCCcceEEEEEee--c---CCCCCccEEEEEEEEeccCC
Q 021949           82 KIKSDGLL-GDKTVGEVIVPIKELLDSSSSSSSGDAKSMKFVTYQVR--S---SSGKPKGELHFSYKFSEPTV  148 (305)
Q Consensus        82 ~V~d~~~~-~d~~IG~~~vpL~~l~~~~~~~~~~~g~~~~~~~~~l~--~---~~g~~~G~l~lsl~~~~~~~  148 (305)
                      .|+|++.+ .++++|+.+|.|..|.......++      .+....+-  +   ..-+.+|+|.+++.|.....
T Consensus       167 ~vcdn~~~~~~~sqGq~r~~lkKl~p~q~k~f~------~cl~~~lp~~rad~~~~E~rg~i~isl~~~s~~~  233 (362)
T KOG1013|consen  167 VVCDNDKKTHNESQGQSRVSLKKLKPLQRKSFN------ICLEKSLPSERADRDEDEERGAILISLAYSSTTP  233 (362)
T ss_pred             eeccCcccccccCcccchhhhhccChhhcchhh------hhhhccCCcccccccchhhccceeeeeccCcCCC
Confidence            88888887 789999999999998653311111      11222222  1   12367899999999876543

>KOG1011 consensus Neurotransmitter release regulator, UNC-13 [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]

Probab=98.35  E-value=2e-06  Score=84.50  Aligned_cols=111  Identities=18%  Similarity=0.264  Sum_probs=87.6

Q ss_pred             ceEEEEEEEecCCCCCCCCCCCCcEEEEEEecCCC-CCCceEEeEecCCCCCCCeeeceEEEEeccchhccCceEEEEEE
Q 021949            5 RALDLNLISAKHLKDVHLISKMDVYAVVSISGDHT-IKKQKVKSHVDRSGGSNPTWNFPIKFTFNQSLAQQNRLTLDFKI   83 (305)
Q Consensus         5 ~~L~V~vvsA~dL~~~~~~gk~dpYv~v~l~~~~~-~~~~~~kT~v~k~~~~nP~Wne~f~f~v~~~~~~~~~~~L~v~V   83 (305)
                      .++.|+|+.|.||+... .+...|||+|.|.+... ..++++.|+...+ +..|.+||+|.|.+.++. .....+|.|.|
T Consensus      1125 hkvtvkvvaandlkwqt-sgmFrPFVEV~ivGP~lsDKKRK~~TKtKsn-nWaPKyNEtF~f~Lg~e~-~Pe~YEL~~~V 1201 (1283)
T KOG1011|consen 1125 HKVTVKVVAANDLKWQT-SGMFRPFVEVHIVGPHLSDKKRKFSTKTKSN-NWAPKYNETFHFFLGNEG-GPEHYELQFCV 1201 (1283)
T ss_pred             ceEEEEEEecccccchh-ccccccceEEEEecCcccchhhhccccccCC-CcCcccCceeEEEeccCC-CCceEEEEEee
Confidence            46889999999999753 56778999999876433 2356777887554 899999999999997654 33458999999


Q ss_pred             EecCCC-CCcceeEEEEeCcccccccCCCCCCCCCcceEEEEEeec
Q 021949           84 KSDGLL-GDKTVGEVIVPIKELLDSSSSSSSGDAKSMKFVTYQVRS  128 (305)
Q Consensus        84 ~d~~~~-~d~~IG~~~vpL~~l~~~~~~~~~~~g~~~~~~~~~l~~  128 (305)
                      .|.... .|+.||.+.+.|+++...+          -...|++|-+
T Consensus      1202 KDYCFAReDRvvGl~VlqL~~va~kG----------S~a~W~pLgr 1237 (1283)
T KOG1011|consen 1202 KDYCFAREDRVVGLAVLQLRSVADKG----------SCACWVPLGR 1237 (1283)
T ss_pred             hhheeecccceeeeeeeehhhHhhcC----------ceeEeeeccc
Confidence            998876 6889999999999998654          1467888865

>KOG1327 consensus Copine [Signal transduction mechanisms]

Probab=98.23  E-value=2.7e-06  Score=82.90  Aligned_cols=94  Identities=17%  Similarity=0.260  Sum_probs=76.2

Q ss_pred             EEEecCCCCCCCCCCCCcEEEEEEecCCCCCCceEEeEecCCCCCCCeeeceEEEEeccchhccCceEEEEEEEecCCC-
Q 021949           11 LISAKHLKDVHLISKMDVYAVVSISGDHTIKKQKVKSHVDRSGGSNPTWNFPIKFTFNQSLAQQNRLTLDFKIKSDGLL-   89 (305)
Q Consensus        11 vvsA~dL~~~~~~gk~dpYv~v~l~~~~~~~~~~~kT~v~k~~~~nP~Wne~f~f~v~~~~~~~~~~~L~v~V~d~~~~-   89 (305)
                      .++|+.|.++++++++|+|..+.-..++..+...++|.+.++ +++|.|. .|.+.+...+..+.+..+.|+|||.+.. 
T Consensus       142 ~~~~~~ld~kd~f~ksd~~l~~~~~~~d~s~~~~~~tEv~~n-~l~p~w~-~~~i~~~~l~~~~~~~~~~i~~~d~~~~~  219 (529)
T KOG1327|consen  142 SFRAKNLDPKDFFSKSDPYLEFYKRVDDGSTQMLYRTEVVKN-TLNPQWA-PFSISLQSLCSKDGNRPIQIECYDYDSNG  219 (529)
T ss_pred             eeeeeecCcccccccCCcceEEEEecCCCceeeccccceecc-CCCCccc-ccccchhhhcccCCCCceEEEEeccCCCC
Confidence            466788999999999999999887655555578899999988 8999998 5666665554444457899999999988 


Q ss_pred             CCcceeEEEEeCccccc
Q 021949           90 GDKTVGEVIVPIKELLD  106 (305)
Q Consensus        90 ~d~~IG~~~vpL~~l~~  106 (305)
                      ++++||++...+.++..
T Consensus       220 ~~~~ig~~~tt~~~~~~  236 (529)
T KOG1327|consen  220 KHDLIGKFQTTLSELQE  236 (529)
T ss_pred             CcCceeEecccHHHhcc
Confidence            66999999999999863

>KOG1013 consensus Synaptic vesicle protein rabphilin-3A [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.14  E-value=3.6e-06  Score=77.06  Aligned_cols=93  Identities=16%  Similarity=0.193  Sum_probs=77.6

Q ss_pred             cceEEEEEEEecCCCCCCCCCCCCcEEEEEEecCCCCCCceEEeEecCCCCCCCeeeceEEEEeccchhccCceEEEEEE
Q 021949            4 YRALDLNLISAKHLKDVHLISKMDVYAVVSISGDHTIKKQKVKSHVDRSGGSNPTWNFPIKFTFNQSLAQQNRLTLDFKI   83 (305)
Q Consensus         4 ~~~L~V~vvsA~dL~~~~~~gk~dpYv~v~l~~~~~~~~~~~kT~v~k~~~~nP~Wne~f~f~v~~~~~~~~~~~L~v~V   83 (305)
                      ..-|.|++++|.+|...+..+-+||||.+++..+. ..+-++||.+.|+ +.+|+||+.|.|.+....+  ....+.|.|
T Consensus       232 ~~~l~vt~iRc~~l~ssDsng~sDpyvS~~l~pdv-~~~fkkKt~~~K~-t~~p~fd~~~~~~i~pgdL--a~~kv~lsv  307 (362)
T KOG1013|consen  232 TPGLIVTIIRCSHLASSDSNGYSDPYVSQRLSPDV-GKKFKKKTQQKKK-TLNPEFDEEFFYDIGPGDL--AYKKVALSV  307 (362)
T ss_pred             CCceEEEEEEeeeeeccccCCCCCccceeecCCCc-chhhcccCcchhc-cCCccccccccccCCccch--hcceEEEee
Confidence            35589999999999998888999999999998543 3367899999887 8999999999999988776  336899999


Q ss_pred             EecCCC-CCcceeEEEEe
Q 021949           84 KSDGLL-GDKTVGEVIVP  100 (305)
Q Consensus        84 ~d~~~~-~d~~IG~~~vp  100 (305)
                      ||.+.- ..+++|-+..-
T Consensus       308 gd~~~G~s~d~~GG~~~g  325 (362)
T KOG1013|consen  308 GDYDIGKSNDSIGGSMLG  325 (362)
T ss_pred             cccCCCcCccCCCccccc
Confidence            999877 78888875543

>KOG1265 consensus Phospholipase C [Lipid transport and metabolism]

Probab=97.96  E-value=3.2e-05  Score=78.55  Aligned_cols=116  Identities=21%  Similarity=0.331  Sum_probs=84.6

Q ss_pred             ceEEEEEEEecCCCCCCCCCCCCcEEEEEEecCCCCC-CceEEeEecCCCCCCCeeece-EEEE-eccchhccCceEEEE
Q 021949            5 RALDLNLISAKHLKDVHLISKMDVYAVVSISGDHTIK-KQKVKSHVDRSGGSNPTWNFP-IKFT-FNQSLAQQNRLTLDF   81 (305)
Q Consensus         5 ~~L~V~vvsA~dL~~~~~~gk~dpYv~v~l~~~~~~~-~~~~kT~v~k~~~~nP~Wne~-f~f~-v~~~~~~~~~~~L~v   81 (305)
                      .+|.|+||++.-|.+..    ...||.|.+-+-+.+. ++++||+++..++.||+|+|. |.|. |--..+    ..|.|
T Consensus       703 ~t~sV~VISgqFLSdrk----vgtyVEVdmfgLP~Dt~Rk~~rtrt~~~n~~npvy~eepfvF~KVvLpeL----A~lRi  774 (1189)
T KOG1265|consen  703 ATLSVTVISGQFLSDRK----VGTYVEVDMFGLPTDTIRKEFRTRTVQGNSFNPVYEEEPFVFRKVVLPEL----ASLRI  774 (1189)
T ss_pred             eeEEEEEEeeeeccccc----cCceEEEEecCCCchhhhhhhhhccccCCCCCcccccCCcccceecccch----hheee
Confidence            57899999999887654    6699999988755533 378999999999999999865 7775 322222    58999


Q ss_pred             EEEecCCCCCcceeEEEEeCcccccccCCCCCCCCCcceEEEEEeecCCCCCc--cEEEEEEEEe
Q 021949           82 KIKSDGLLGDKTVGEVIVPIKELLDSSSSSSSGDAKSMKFVTYQVRSSSGKPK--GELHFSYKFS  144 (305)
Q Consensus        82 ~V~d~~~~~d~~IG~~~vpL~~l~~~~~~~~~~~g~~~~~~~~~l~~~~g~~~--G~l~lsl~~~  144 (305)
                      .|++++   .+|||+=.+||..|..+             .+.+.||..++.+-  -.|.|.|.+.
T Consensus       775 avyeEg---gK~ig~RIlpvd~l~~G-------------Yrhv~LRse~Nqpl~lp~Lfv~i~~k  823 (1189)
T KOG1265|consen  775 AVYEEG---GKFIGQRILPVDGLNAG-------------YRHVCLRSESNQPLTLPALFVYIVLK  823 (1189)
T ss_pred             eeeccC---CceeeeeccchhcccCc-------------ceeEEecCCCCCccccceeEEEEEee
Confidence            999984   67999999999988742             33456776655543  3455555554

>KOG1326 consensus Membrane-associated protein FER-1 and related ferlins, contain multiple C2 domains [Cell wall/membrane/envelope biogenesis]

Probab=97.88  E-value=8.3e-06  Score=83.68  Aligned_cols=92  Identities=13%  Similarity=0.161  Sum_probs=75.0

Q ss_pred             ceEEEEEEEecCCCCCCCCCCCCcEEEEEEecCCCCCCceEEeEecCCCCCCCeeeceEEEEeccchhccCceEEEEEEE
Q 021949            5 RALDLNLISAKHLKDVHLISKMDVYAVVSISGDHTIKKQKVKSHVDRSGGSNPTWNFPIKFTFNQSLAQQNRLTLDFKIK   84 (305)
Q Consensus         5 ~~L~V~vvsA~dL~~~~~~gk~dpYv~v~l~~~~~~~~~~~kT~v~k~~~~nP~Wne~f~f~v~~~~~~~~~~~L~v~V~   84 (305)
                      ..++|.|++|-+|...+..++.|||+++.++...    ..-++.-+.+ ++||+|++-|++.+.....    ..|+|+||
T Consensus       613 ~LvrVyvv~A~~L~p~D~ng~adpYv~l~lGk~~----~~d~~~yip~-tlnPVfgkmfel~~~lp~e----k~l~v~vy  683 (1105)
T KOG1326|consen  613 CLVRVYVVEAFSLQPSDGNGDADPYVKLLLGKKR----TLDRAHYIPN-TLNPVFGKMFELECLLPFE----KDLIVEVY  683 (1105)
T ss_pred             eeEEEEEEEeeeccccCCCCCcCceeeeeeccch----hhhhhhcCcC-CCCcHHHHHHHhhcccchh----hcceeEEE
Confidence            3467999999999999999999999999998732    3455566666 8999999988877644332    47899999


Q ss_pred             ecCCC-CCcceeEEEEeCcccc
Q 021949           85 SDGLL-GDKTVGEVIVPIKELL  105 (305)
Q Consensus        85 d~~~~-~d~~IG~~~vpL~~l~  105 (305)
                      |++.+ .|+.||+.+|+|+.-.
T Consensus       684 d~D~~~~d~~iget~iDLEnR~  705 (1105)
T KOG1326|consen  684 DHDLEAQDEKIGETTIDLENRW  705 (1105)
T ss_pred             Eeecccccchhhceehhhhhcc
Confidence            99998 7999999999988754

>cd08684 C2A_Tac2-N C2 domain first repeat found in Tac2-N (Tandem C2 protein in Nucleus)

Probab=97.86  E-value=2.7e-05  Score=58.37  Aligned_cols=90  Identities=17%  Similarity=0.253  Sum_probs=65.0

Q ss_pred             EEEEEEecCCCCCCCCCC-CCcEEE--EEEecCCCCCCceEEeEecCCCCCCCeeeceEEEEeccchhccCceEEEEEEE
Q 021949            8 DLNLISAKHLKDVHLISK-MDVYAV--VSISGDHTIKKQKVKSHVDRSGGSNPTWNFPIKFTFNQSLAQQNRLTLDFKIK   84 (305)
Q Consensus         8 ~V~vvsA~dL~~~~~~gk-~dpYv~--v~l~~~~~~~~~~~kT~v~k~~~~nP~Wne~f~f~v~~~~~~~~~~~L~v~V~   84 (305)
                      -|||+.|+||...+..+. ...|++  +.+..     ...+||.+. .+..||+|+|+|.|.+....+  .+..|.|.|+
T Consensus         2 witv~~c~d~s~~~~~~e~~~i~ikg~~tl~k-----pv~~KsS~r-rgs~d~~f~ETFVFqi~l~qL--~~V~L~fsv~   73 (103)
T cd08684           2 WITVLKCKDLSWPSSCGENPTIYIKGILTLPK-----PVHFKSSAK-EGSNDIEFMETFVFAIKLQNL--QTVRLVFKIQ   73 (103)
T ss_pred             EEEEEEecccccccccCcCCeeEEEEEEecCC-----Cccccchhh-cCCCChhHHHHHHHHHHHhhc--cceEEEEEee
Confidence            589999999987654332 334554  33332     256777764 458999999999999866544  4578999998


Q ss_pred             ecCCCCCcceeEEEEeCccccc
Q 021949           85 SDGLLGDKTVGEVIVPIKELLD  106 (305)
Q Consensus        85 d~~~~~d~~IG~~~vpL~~l~~  106 (305)
                      + ..-+.+.||+|.+.|+++-.
T Consensus        74 ~-~~~RKe~iG~~sL~l~s~ge   94 (103)
T cd08684          74 T-QTPRKRTIGECSLSLRTLST   94 (103)
T ss_pred             c-cCCccceeeEEEeecccCCH
Confidence            8 23377899999999998764

Tac2-N contains two C2 domains and a short C-terminus including a WHXL motif, which are key in stabilizing transport vesicles to the plasma membrane by binding to a plasma membrane. However unlike the usual carboxyl-terminal-type (C-type) tandem C2 proteins, it lacks a transmembrane domain, a Slp-homology domain, and a Munc13-1-interacting domain. Homology search analysis indicate that no known protein motifs are located in its N-terminus, making Tac2-N a novel class of Ca2+-independent, C-type tandem C2 proteins. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphos

>PLN02964 phosphatidylserine decarboxylase

Probab=97.83  E-value=3e-05  Score=78.27  Aligned_cols=85  Identities=18%  Similarity=0.274  Sum_probs=66.4

Q ss_pred             ceEEEEEEEecCCCCCCCCCCCCcEEE-EEEecCCCCCCceEEeEecCCCCCCCeeeceEEEEeccchhccCceEEEEEE
Q 021949            5 RALDLNLISAKHLKDVHLISKMDVYAV-VSISGDHTIKKQKVKSHVDRSGGSNPTWNFPIKFTFNQSLAQQNRLTLDFKI   83 (305)
Q Consensus         5 ~~L~V~vvsA~dL~~~~~~gk~dpYv~-v~l~~~~~~~~~~~kT~v~k~~~~nP~Wne~f~f~v~~~~~~~~~~~L~v~V   83 (305)
                      +.+.|+|++|+    +.+   .|+|.+ ++++.      +++||.+.++ +.||+||+.-.|.|.....    ...+|.|
T Consensus        54 ~~~~~~~~~~~----~~~---~~~~~~~~~~g~------~~f~t~~~~~-~~~p~~~~~~~~~~~~~~~----~~~~~~~  115 (644)
T PLN02964         54 GIALLTLVGAE----MKF---KDKWLACVSFGE------QTFRTETSDS-TDKPVWNSEKKLLLEKNGP----HLARISV  115 (644)
T ss_pred             CeEEEEeehhh----hcc---CCcEEEEEEecc------eeeeeccccc-cCCcccchhhceEeccCCc----ceEEEEE
Confidence            56778888886    221   365554 55543      8999999888 8999999999999877654    3569999


Q ss_pred             EecCCC-CCcceeEEEEeCcccccc
Q 021949           84 KSDGLL-GDKTVGEVIVPIKELLDS  107 (305)
Q Consensus        84 ~d~~~~-~d~~IG~~~vpL~~l~~~  107 (305)
                      ||++.+ .+++++.|.++|.++..+
T Consensus       116 ~~~~~~s~n~lv~~~e~~~t~f~~k  140 (644)
T PLN02964        116 FETNRLSKNTLVGYCELDLFDFVTQ  140 (644)
T ss_pred             EecCCCCHHHhhhheeecHhhccHH
Confidence            999998 789999999988777654

>PF15627 CEP76-C2: CEP76 C2 domain

Probab=97.75  E-value=0.00064  Score=56.72  Aligned_cols=132  Identities=14%  Similarity=0.139  Sum_probs=91.6

Q ss_pred             cceEEEEEEEecCCCCCCCC--CCCCcEEEEEEecCCCCCCceEEeEecCCCCCCCeeeceEEEEeccchhcc-------
Q 021949            4 YRALDLNLISAKHLKDVHLI--SKMDVYAVVSISGDHTIKKQKVKSHVDRSGGSNPTWNFPIKFTFNQSLAQQ-------   74 (305)
Q Consensus         4 ~~~L~V~vvsA~dL~~~~~~--gk~dpYv~v~l~~~~~~~~~~~kT~v~k~~~~nP~Wne~f~f~v~~~~~~~-------   74 (305)
                      .+-|.|+|+.++-...--..  +..+..+.+.+.-.    .++++|+.+.. +.+|.|+|.|.|++.......       
T Consensus         8 ~~yL~l~vlgGkAFld~l~~~~~~~~s~~~l~l~f~----~QRF~S~~Vp~-~~eP~f~e~Flf~l~~~~~~~~~~~~~l   82 (156)
T PF15627_consen    8 RRYLHLRVLGGKAFLDHLQEPEGQVCSTFTLHLHFR----GQRFRSKPVPC-ACEPDFNEEFLFELPRDSFGAGSTATTL   82 (156)
T ss_pred             ceEEEEEEeCchhHhhhhhccCCCCceEEEEEEEec----CceEecCCccc-ccCCCCCCcEEEEecccccccccchhHh
Confidence            46689999988854321110  34555555555532    38999999887 799999999999997664111       


Q ss_pred             --CceEEEEEEEecCCC-CCcceeEEEEeCcccccccCCCCCCCCCcceEEEEEeecCCCC---CccEEEEEEEEeccCC
Q 021949           75 --NRLTLDFKIKSDGLL-GDKTVGEVIVPIKELLDSSSSSSSGDAKSMKFVTYQVRSSSGK---PKGELHFSYKFSEPTV  148 (305)
Q Consensus        75 --~~~~L~v~V~d~~~~-~d~~IG~~~vpL~~l~~~~~~~~~~~g~~~~~~~~~l~~~~g~---~~G~l~lsl~~~~~~~  148 (305)
                        -...|+|.|...+.. ...++|+-.++-+.++...    .+.    .....+|......   +.|.|+|++.+.+...
T Consensus        83 ls~~~pihivli~~d~~~~~~Lv~s~~ldWR~vL~s~----~~~----~~~~vEL~G~~~e~kv~~GiL~l~lELlP~~~  154 (156)
T PF15627_consen   83 LSISDPIHIVLIRTDPSGETTLVGSHFLDWRKVLCSG----NGS----TSFTVELCGVGPESKVPVGILDLRLELLPNLN  154 (156)
T ss_pred             hcCCCceEEEEEEecCCCceEeeeeceehHHHHhccC----CCc----cceeEEEeccCCCCccceeEEEEEEEeecCCC
Confidence              123577777776655 5589999999999998755    221    2455666654333   7899999999998764

>PF10358 NT-C2: N-terminal C2 in EEIG1 and EHBP1 proteins; InterPro: IPR019448 This entry represents the N-terminal 150 residues of a family of conserved proteins which are induced by oestrogen []

Probab=97.66  E-value=0.0031  Score=51.58  Aligned_cols=129  Identities=18%  Similarity=0.208  Sum_probs=79.6

Q ss_pred             cceEEEEEEEecCCCCCCCCCCCCcEEEEEEecCCCCCCceEEeEecCCCCCCCeeeceEEEEeccch----hccCceEE
Q 021949            4 YRALDLNLISAKHLKDVHLISKMDVYAVVSISGDHTIKKQKVKSHVDRSGGSNPTWNFPIKFTFNQSL----AQQNRLTL   79 (305)
Q Consensus         4 ~~~L~V~vvsA~dL~~~~~~gk~dpYv~v~l~~~~~~~~~~~kT~v~k~~~~nP~Wne~f~f~v~~~~----~~~~~~~L   79 (305)
                      ...+.|+|.+..++...+    ...+|++.. ++..  ....+|.........-.|||+|.|.+.-..    .....-.|
T Consensus         6 kf~~~l~i~~l~~~p~~~----~~v~v~wkr-~~~~--~~~~~t~~~~~~~~~v~w~e~~~~~~tl~~~~k~~~~~~K~~   78 (143)
T PF10358_consen    6 KFQFDLTIHELENLPSSN----GKVFVKWKR-GDKS--KGSGTTSRANVKNGKVQWNEEFSFPCTLYRDKKSKEFQPKEL   78 (143)
T ss_pred             eEEEEEEEEEeECcCCCC----CEEEEEEEE-CCCC--ccceeeeeeeccccEEEEeeEEEEEEEEEEcCCCCcEeeEEE
Confidence            346788889988877521    233444433 3221  013455554444568999999988753221    11233567


Q ss_pred             EEEEEecCCCCC-cceeEEEEeCcccccccCCCCCCCCCcceEEEEEeecCCCCCccEEEEEEEEeccCC
Q 021949           80 DFKIKSDGLLGD-KTVGEVIVPIKELLDSSSSSSSGDAKSMKFVTYQVRSSSGKPKGELHFSYKFSEPTV  148 (305)
Q Consensus        80 ~v~V~d~~~~~d-~~IG~~~vpL~~l~~~~~~~~~~~g~~~~~~~~~l~~~~g~~~G~l~lsl~~~~~~~  148 (305)
                      +|.|+.....+. ..||.+.|+|.++....    .    +.....+.|... .+...+|+|+|.+.....
T Consensus        79 ~~~v~~~~~~~~k~~lG~~~inLaey~~~~----~----~~~~~~~~l~~~-~~~~a~L~isi~~~~~~~  139 (143)
T PF10358_consen   79 KFSVFEVDGSGKKKVLGKVSINLAEYANED----E----EPITVRLLLKKC-KKSNATLSISISLSELRE  139 (143)
T ss_pred             EEEEEEecCCCccceEEEEEEEHHHhhCcC----C----CcEEEEEeCccC-CCCCcEEEEEEEEEECcc
Confidence            888887743323 58999999999998632    1    124556666653 456788999999887654

Proteins in this entry are usually annotated as Fam102A, Fam102B, or Eeig1 (early oestrogen-responsive gene product 1).

>cd08398 C2_PI3K_class_I_alpha C2 domain present in class I alpha phosphatidylinositol 3-kinases (PI3Ks)

Probab=97.40  E-value=0.0037  Score=52.55  Aligned_cols=95  Identities=14%  Similarity=0.065  Sum_probs=61.8

Q ss_pred             cceEEEEEEEecCCCCCCCCCCCCcEEEEEEecCCCCCCceEEeEecCCCCCCCeeeceEEEEeccchhccCceEEEEEE
Q 021949            4 YRALDLNLISAKHLKDVHLISKMDVYAVVSISGDHTIKKQKVKSHVDRSGGSNPTWNFPIKFTFNQSLAQQNRLTLDFKI   83 (305)
Q Consensus         4 ~~~L~V~vvsA~dL~~~~~~gk~dpYv~v~l~~~~~~~~~~~kT~v~k~~~~nP~Wne~f~f~v~~~~~~~~~~~L~v~V   83 (305)
                      .+.|+|+|++++++...   ...+.||.+.+-.....-.....|+-+.  ..++.|||-++|+|.-..+- +...|.|.|
T Consensus         7 ~~~~~v~i~~~~~~~~~---~~~~l~V~v~l~~g~~~L~~pv~T~~v~--~~~~~WnEwL~fpI~i~dLP-r~ArL~iti   80 (158)
T cd08398           7 NSNLRIKILCATYVNVN---DIDKIYVRTGIYHGGEPLCDNVNTQRVP--CSNPRWNEWLDYDIYIPDLP-RSARLCLSI   80 (158)
T ss_pred             CCCeEEEEEeeccCCCC---CcCeEEEEEEEEECCEEccCeeEecccC--CCCCccceeEEcccchhcCC-hhheEEEEE
Confidence            46789999999988643   2368888887764321001122333322  25799999999987544432 347899999


Q ss_pred             EecCCC-----CCcceeEEEEeCccc
Q 021949           84 KSDGLL-----GDKTVGEVIVPIKEL  104 (305)
Q Consensus        84 ~d~~~~-----~d~~IG~~~vpL~~l  104 (305)
                      |+....     ....||.+.++|-+.
T Consensus        81 ~~~~~~~~~k~~~~~iG~~ni~LFd~  106 (158)
T cd08398          81 CSVKGRKGAKEEHCPLAWGNINLFDY  106 (158)
T ss_pred             EEEecccCCCCceEEEEEEEEEEECC
Confidence            986532     124699999987774

PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. The members here are class I, alpha isoform PI3Ks and contain both a Ras-binding domain and a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a c

>cd08687 C2_PKN-like C2 domain in Protein kinase C-like (PKN) proteins

Probab=97.34  E-value=0.002  Score=48.60  Aligned_cols=85  Identities=13%  Similarity=0.165  Sum_probs=61.4

Q ss_pred             CCCcEEEEEEecCCCCCCceEEeEecCCCCCCCeeeceEEEEeccchhccCceEEEEEEEecCCCCCcceeEEEEeCccc
Q 021949           25 KMDVYAVVSISGDHTIKKQKVKSHVDRSGGSNPTWNFPIKFTFNQSLAQQNRLTLDFKIKSDGLLGDKTVGEVIVPIKEL  104 (305)
Q Consensus        25 k~dpYv~v~l~~~~~~~~~~~kT~v~k~~~~nP~Wne~f~f~v~~~~~~~~~~~L~v~V~d~~~~~d~~IG~~~vpL~~l  104 (305)
                      ..+..+++.+++     +.+..|.-...  .+-.|+++|+|+++.+      .+|+|.||-+|.  ..+.|...+.|++.
T Consensus         8 ~~eV~avLklDn-----~~VgqT~Wk~~--s~q~WDQ~Fti~LdRs------RELEI~VywrD~--RslCav~~lrLEd~   72 (98)
T cd08687           8 CSEVSAVLKLDN-----TVVGQTQWKPK--SNQAWDQSFTLELERS------RELEIAVYWRDW--RSLCAVKFLKLEDE   72 (98)
T ss_pred             ccceEEEEEEcC-----eEEeecccccc--ccccccceeEEEeecc------cEEEEEEEEecc--hhhhhheeeEhhhh
Confidence            368899999987     46677765443  5889999999999765      489999987653  35788888888885


Q ss_pred             ccccCCCCCCCCCcceEEEEEeecCCCCCccEEEEEEEE
Q 021949          105 LDSSSSSSSGDAKSMKFVTYQVRSSSGKPKGELHFSYKF  143 (305)
Q Consensus       105 ~~~~~~~~~~~g~~~~~~~~~l~~~~g~~~G~l~lsl~~  143 (305)
                      ....            .  .     .-.+.|.|..+++|
T Consensus        73 ~~~~------------~--~-----~lepqg~l~~ev~f   92 (98)
T cd08687          73 RHEV------------Q--L-----DMEPQLCLVAELTF   92 (98)
T ss_pred             cccc------------e--e-----ccccccEEEEEEEe
Confidence            4311            1  1     23467888888877

PKN is a lipid-activated serine/threonine kinase. It is a member of the protein kinase C (PKC) superfamily, but lacks a C1 domain. There are at least 3 different isoforms of PKN (PRK1/PKNalpha/PAK1; PKNbeta, and PRK2/PAK2/PKNgamma). The C-terminal region contains the Ser/Thr type protein kinase domain, while the N-terminal region of PKN contains three antiparallel coiled-coil (ACC) finger domains which are relatively rich in charged residues and contain a leucine zipper-like sequence. These domains binds to the small GTPase RhoA. Following these domains is a C2-like domain. Its C-terminal part functions as an auto-inhibitory region. PKNs are not activated by classical PKC activators such as diacylglycerol, phorbol ester or Ca2+, but instead are activated by phospholipids and unsaturated fatty acids. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 struct

>KOG2060 consensus Rab3 effector RIM1 and related proteins, contain PDZ and C2 domains [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.21  E-value=0.00043  Score=64.66  Aligned_cols=113  Identities=22%  Similarity=0.161  Sum_probs=80.7

Q ss_pred             CCccceEEEEEEEecCCCCCCCC-CCCCcEEEEEEecCCCCCCceEEeEecCCCCCCCeeeceEEEEeccchhccCceEE
Q 021949            1 MASYRALDLNLISAKHLKDVHLI-SKMDVYAVVSISGDHTIKKQKVKSHVDRSGGSNPTWNFPIKFTFNQSLAQQNRLTL   79 (305)
Q Consensus         1 m~~~~~L~V~vvsA~dL~~~~~~-gk~dpYv~v~l~~~~~~~~~~~kT~v~k~~~~nP~Wne~f~f~v~~~~~~~~~~~L   79 (305)
                      |...+.|+|.|++|++|....-. ...++||+|++...... ..+.+|+..++ +..|.+-..+.|.-....     ..|
T Consensus       265 ~d~~g~l~vEii~ar~l~~k~~~k~~~apyVkVYlL~~g~c-~ak~ktk~A~k-T~~plyqq~l~f~~sp~~-----k~L  337 (405)
T KOG2060|consen  265 MDSKGDLEVEIIRARGLVVKPGSKSLPAPYVKVYLLENGFC-IAKKKTKSARK-TLDPLYQQQLSFDQSPPG-----KYL  337 (405)
T ss_pred             hcccCceeEEEEecccccccCCcccccCceeEEEEcCCCce-ecccccccccc-cCchhhhhhhhhccCCCc-----cEE
Confidence            45678999999999999754322 35789999998754332 35778888777 677766666677654433     589


Q ss_pred             EEEEEec-CCC-CCcceeEEEEeCcccccccCCCCCCCCCcceEEEEEeecC
Q 021949           80 DFKIKSD-GLL-GDKTVGEVIVPIKELLDSSSSSSSGDAKSMKFVTYQVRSS  129 (305)
Q Consensus        80 ~v~V~d~-~~~-~d~~IG~~~vpL~~l~~~~~~~~~~~g~~~~~~~~~l~~~  129 (305)
                      .+.||.. ..+ .+.|+|.+.|-|.||....         .+-..||+|.-.
T Consensus       338 q~tv~gdygRmd~k~fmg~aqi~l~eL~ls~---------~~~igwyKlfgs  380 (405)
T KOG2060|consen  338 QGTVWGDYGRMDHKSFMGVAQIMLDELNLSS---------SPVIGWYKLFGS  380 (405)
T ss_pred             EEEEeccccccchHHHhhHHHHHhhhhcccc---------ccceeeeeccCC
Confidence            9999964 344 6779999999999986432         134778988864

>PF12416 DUF3668: Cep120 protein; InterPro: IPR022136 This domain family is found in eukaryotes, and is typically between 75 and 114 amino acids in length

Probab=97.17  E-value=0.0083  Score=56.49  Aligned_cols=125  Identities=14%  Similarity=0.242  Sum_probs=93.1

Q ss_pred             EEEEEEEecCCCCCCCCCCCCcEEEEEEecCCCCCCceEEeEecCCCCCCCeeeceEEEEeccchh---ccCceEEEEEE
Q 021949            7 LDLNLISAKHLKDVHLISKMDVYAVVSISGDHTIKKQKVKSHVDRSGGSNPTWNFPIKFTFNQSLA---QQNRLTLDFKI   83 (305)
Q Consensus         7 L~V~vvsA~dL~~~~~~gk~dpYv~v~l~~~~~~~~~~~kT~v~k~~~~nP~Wne~f~f~v~~~~~---~~~~~~L~v~V   83 (305)
                      +.|.|+++++.....   +....+..++++      ....|..+.. +.+|.||.++.++++...+   ...+..|+|++
T Consensus         2 ivl~i~egr~F~~~~---~~~~vv~a~~ng------~~l~TDpv~~-~~~p~f~teL~WE~Dr~~l~~~r~~~tPiKl~c   71 (340)
T PF12416_consen    2 IVLSILEGRNFPQRP---RHPIVVEAKFNG------ESLETDPVPH-TESPQFNTELAWECDRKALKQHRLQRTPIKLQC   71 (340)
T ss_pred             EEEEEecccCCCCCC---CccEEEEEEeCC------ceeeecCCCC-CCCceeecceeeeccHHHHHHhhccCCceEEEE
Confidence            678999999887652   355677788877      5777877666 7899999999999876543   23457899999


Q ss_pred             EecCCC--CCcceeEEEEeCccc---ccccCCCCCCCCCcceEEEEEeecCCCC---CccEEEEEEEEeccCCC
Q 021949           84 KSDGLL--GDKTVGEVIVPIKEL---LDSSSSSSSGDAKSMKFVTYQVRSSSGK---PKGELHFSYKFSEPTVG  149 (305)
Q Consensus        84 ~d~~~~--~d~~IG~~~vpL~~l---~~~~~~~~~~~g~~~~~~~~~l~~~~g~---~~G~l~lsl~~~~~~~~  149 (305)
                      |..+..  ..+.||.+.++|+.+   ..+.        ......||+|...+.+   .+-+|.|++.+..+...
T Consensus        72 ~a~~~~~~~re~iGyv~LdLRsa~~~~~~~--------~~~~~~W~~LL~~~~~y~~~KPEl~l~l~ie~~~~~  137 (340)
T PF12416_consen   72 FAVDGSTGKRESIGYVVLDLRSAVVPQEKN--------QKQKPKWYKLLSSSSKYKKHKPELLLSLSIEDDSKP  137 (340)
T ss_pred             EEecCCCCcceeccEEEEEccccccccccc--------cccCCCeeEccccccccccCCccEEEEEEEeccccc
Confidence            988733  677899999999998   3221        1246789999875222   46789999999887653

>KOG1924 consensus RhoA GTPase effector DIA/Diaphanous [Signal transduction mechanisms; Cytoskeleton]

Probab=97.06  E-value=0.0044  Score=62.82  Aligned_cols=15  Identities=13%  Similarity=0.722  Sum_probs=7.7

Q ss_pred             CCCCeeeceEEEEec
Q 021949           54 GSNPTWNFPIKFTFN   68 (305)
Q Consensus        54 ~~nP~Wne~f~f~v~   68 (305)
                      +.+|.|.-.|+|+|+
T Consensus       441 ~~DPdf~yr~~l~id  455 (1102)
T KOG1924|consen  441 GMDPDFKYRFRLDID  455 (1102)
T ss_pred             CCCCCcchhhcccCc
Confidence            455555555555443

>cd08693 C2_PI3K_class_I_beta_delta C2 domain present in class I beta and delta phosphatidylinositol 3-kinases (PI3Ks)

Probab=97.05  E-value=0.0037  Score=53.39  Aligned_cols=80  Identities=18%  Similarity=0.181  Sum_probs=51.6

Q ss_pred             cceEEEEEEEecCCCCCCCCCCCCcEEEEEEecCCCCCCceEEeEecCCCCCCCeeeceEEEEeccchhccCceEEEEEE
Q 021949            4 YRALDLNLISAKHLKDVHLISKMDVYAVVSISGDHTIKKQKVKSHVDRSGGSNPTWNFPIKFTFNQSLAQQNRLTLDFKI   83 (305)
Q Consensus         4 ~~~L~V~vvsA~dL~~~~~~gk~dpYv~v~l~~~~~~~~~~~kT~v~k~~~~nP~Wne~f~f~v~~~~~~~~~~~L~v~V   83 (305)
                      ...++|+|+++.+|...  ....+.||.+.|-.....-.....|+...- ..++.|||.++|+|.-..+- +...|.|.|
T Consensus         7 ~~~f~i~i~~~~~~~~~--~~~~~l~V~~~lyhG~~~L~~p~~T~~~~~-~~~~~Wnewl~F~I~i~dLP-r~ArLciti   82 (173)
T cd08693           7 EEKFSITLHKISNLNAA--ERTMKVGVQAGLFHGGESLCKTVKTSEVSG-KNDPVWNETLEFDINVCDLP-RMARLCFAI   82 (173)
T ss_pred             CCCEEEEEEEeccCccC--CCCceEEEEEEEEECCEEccCceEccccCC-CCccccceeEEcccchhcCC-hhHeEEEEE
Confidence            45789999999988741  234678888776542211012334544332 46799999999987544332 347899999


Q ss_pred             EecC
Q 021949           84 KSDG   87 (305)
Q Consensus        84 ~d~~   87 (305)
                      |+..
T Consensus        83 ~~~~   86 (173)
T cd08693          83 YEVS   86 (173)
T ss_pred             EEec
Confidence            9854

PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. The members here are class I, beta and delta isoforms of PI3Ks and contain both a Ras-binding domain and a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Ty

>cd08380 C2_PI3K_like C2 domain present in phosphatidylinositol 3-kinases (PI3Ks)

Probab=96.98  E-value=0.0045  Score=51.72  Aligned_cols=97  Identities=14%  Similarity=0.090  Sum_probs=62.4

Q ss_pred             ceEEEEEEEecCCCCCCCCCCCCcEEEEEEecCCCCCCceEEeEecCCCCCCCeeeceEEEEeccchhccCceEEEEEEE
Q 021949            5 RALDLNLISAKHLKDVHLISKMDVYAVVSISGDHTIKKQKVKSHVDRSGGSNPTWNFPIKFTFNQSLAQQNRLTLDFKIK   84 (305)
Q Consensus         5 ~~L~V~vvsA~dL~~~~~~gk~dpYv~v~l~~~~~~~~~~~kT~v~k~~~~nP~Wne~f~f~v~~~~~~~~~~~L~v~V~   84 (305)
                      ..++|+|....++.. +.....+.||.+.+-...........|..... ..++.|||.++|++.-..+- +...|.|.||
T Consensus         8 ~~~~i~i~~~~~~~~-~~~~~~~l~V~~~l~~g~~~l~~~~~t~~~~~-~~~~~Wne~l~F~i~~~~LP-~~arL~itl~   84 (156)
T cd08380           8 FNLRIKIHGITNINL-LDSEDLKLYVRVQLYHGGEPLCPPQSTKKVPF-STSVTWNEWLTFDILISDLP-REARLCLSIY   84 (156)
T ss_pred             CCeEEEEEeeccccc-cCCCceeEEEEEEEEECCEEccCceeccCCcC-CCCCcccceeEccchhhcCC-hhheEEEEEE
Confidence            467888888777654 11234678888876543211122334444332 36899999999986544332 3478999999


Q ss_pred             ecCCC---CCcceeEEEEeCccc
Q 021949           85 SDGLL---GDKTVGEVIVPIKEL  104 (305)
Q Consensus        85 d~~~~---~d~~IG~~~vpL~~l  104 (305)
                      +.+..   .+..||++.++|-+.
T Consensus        85 ~~~~~~~~~~~~iG~~~~~lFd~  107 (156)
T cd08380          85 AVSEPGSKKEVPLGWVNVPLFDY  107 (156)
T ss_pred             EEecCCCCcceEEEEEeEEeEcc
Confidence            86544   246899999987764

C2 domain present in all classes of PI3Ks. PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. In addition some PI3Ks contain a Ras-binding domain and/or a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular perm

>PF11618 DUF3250: Protein of unknown function (DUF3250); InterPro: IPR021656 This family of proteins represents a protein with unknown function

Probab=96.93  E-value=0.0057  Score=48.00  Aligned_cols=101  Identities=16%  Similarity=0.223  Sum_probs=55.8

Q ss_pred             EEEEEEecCCCCCCceEEeEecCCCCCCCeeeceEEEEeccchhc---cCceEEEEEEEecCCCCCcceeEEEEeCcccc
Q 021949           29 YAVVSISGDHTIKKQKVKSHVDRSGGSNPTWNFPIKFTFNQSLAQ---QNRLTLDFKIKSDGLLGDKTVGEVIVPIKELL  105 (305)
Q Consensus        29 Yv~v~l~~~~~~~~~~~kT~v~k~~~~nP~Wne~f~f~v~~~~~~---~~~~~L~v~V~d~~~~~d~~IG~~~vpL~~l~  105 (305)
                      ||.+.+-.     -..+.|.+++  +.+|.+|.+..|.|..+..-   .....|.|+++.......+.||.++|+|.+++
T Consensus         2 Fct~dFyd-----fEtq~Tpvv~--G~~p~y~fts~y~V~~d~~fl~YLq~~~~~lELhqa~g~d~~tla~~~i~l~~ll   74 (107)
T PF11618_consen    2 FCTYDFYD-----FETQTTPVVR--GLNPFYDFTSQYKVTMDDLFLHYLQTGSLTLELHQALGSDFETLAAGQISLRPLL   74 (107)
T ss_dssp             EEEE-STT--------EE---EE--SSS----EEEEEEE--SHHHHHHHHH--EEEEEEEE-SS-EEEEEEEEE--SHHH
T ss_pred             EEEEEeec-----eeeeccccee--CCCccceeEEEEEEEcCHHHHHHhhcCCEEEEEEeeccCCeEEEEEEEeechhhh
Confidence            45555443     3678898887  58999999988887655421   12357899998866445678999999999999


Q ss_pred             cccCCCCCCCCCcceEEEEEeecCCCCCccEEEEEEEEe
Q 021949          106 DSSSSSSSGDAKSMKFVTYQVRSSSGKPKGELHFSYKFS  144 (305)
Q Consensus       106 ~~~~~~~~~~g~~~~~~~~~l~~~~g~~~G~l~lsl~~~  144 (305)
                      .+.     +  . ....+..+...+++.-|+|++.+++.
T Consensus        75 ~~~-----~--~-~i~~~~~l~g~~~~~~g~l~y~~rl~  105 (107)
T PF11618_consen   75 ESN-----G--E-RIHGSATLVGVSGEDFGTLEYWIRLR  105 (107)
T ss_dssp             H-------S-----EEEEEEE-BSSS-TSEEEEEEEEEE
T ss_pred             cCC-----C--c-eEEEEEEEeccCCCeEEEEEEEEEec
Confidence            543     1  1 13556677777788999999999875

It may be the C2 domain from KIAA1005 however this cannot be confirmed. ; PDB: 2YRB_A.

>cd08399 C2_PI3K_class_I_gamma C2 domain present in class I gamma phosphatidylinositol 3-kinases (PI3Ks)

Probab=96.62  E-value=0.028  Score=48.19  Aligned_cols=79  Identities=10%  Similarity=0.169  Sum_probs=48.6

Q ss_pred             ceEEEEEEEecCCCCCCCCCCCCcEEEEEEecCCCCCCceEEeEecCCCCCCCeeeceEEEEeccchhccCceEEEEEEE
Q 021949            5 RALDLNLISAKHLKDVHLISKMDVYAVVSISGDHTIKKQKVKSHVDRSGGSNPTWNFPIKFTFNQSLAQQNRLTLDFKIK   84 (305)
Q Consensus         5 ~~L~V~vvsA~dL~~~~~~gk~dpYv~v~l~~~~~~~~~~~kT~v~k~~~~nP~Wne~f~f~v~~~~~~~~~~~L~v~V~   84 (305)
                      ..++|+|++.. +.+.+.......||.+.|-.... .....+|....- +.++.|||-++|+|.-..+- +...|.|.||
T Consensus        10 ~~friki~~~~-~~~~~~~~~~~l~V~~~Ly~g~~-~l~~~~T~~~~~-~~~~~WnEwL~f~I~~~dLP-~~arLc~ti~   85 (178)
T cd08399          10 RKFRVKILGID-IPVLPRNTDLTVFVEANIQHGQQ-VLCQRRTSPKPF-TEEVLWNTWLEFDIKIKDLP-KGALLNLQIY   85 (178)
T ss_pred             CCEEEEEEeec-ccCcCCCCceEEEEEEEEEECCe-ecccceeeccCC-CCCccccccEECccccccCC-hhhEEEEEEE
Confidence            56888988886 33333233455777776554211 112334554444 56799999998887554443 3478999999


Q ss_pred             ecC
Q 021949           85 SDG   87 (305)
Q Consensus        85 d~~   87 (305)
                      +..
T Consensus        86 ~~~   88 (178)
T cd08399          86 CGK   88 (178)
T ss_pred             EEe
Confidence            863

PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. The members here are class I, gamma isoform PI3Ks and contain both a Ras-binding domain and a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a cir

>KOG1326 consensus Membrane-associated protein FER-1 and related ferlins, contain multiple C2 domains [Cell wall/membrane/envelope biogenesis]

Probab=96.56  E-value=0.00066  Score=70.15  Aligned_cols=118  Identities=17%  Similarity=0.125  Sum_probs=81.0

Q ss_pred             EEEEEEEecCCCCCCCCCCCCcEEEEEEecCCCCCCceEEeEecCCCCCCCeeeceEEEEecc-----chhccCceEEEE
Q 021949            7 LDLNLISAKHLKDVHLISKMDVYAVVSISGDHTIKKQKVKSHVDRSGGSNPTWNFPIKFTFNQ-----SLAQQNRLTLDF   81 (305)
Q Consensus         7 L~V~vvsA~dL~~~~~~gk~dpYv~v~l~~~~~~~~~~~kT~v~k~~~~nP~Wne~f~f~v~~-----~~~~~~~~~L~v   81 (305)
                      +++.|..|+.|-..+..+.+|+|+.+.+.+      +.++|.++.. ++||+||.++.|.--+     .....+--.+.|
T Consensus       208 lR~yiyQar~L~a~dk~~~sdp~a~v~f~~------qs~~T~~v~~-tl~ptwdq~~~f~~~ei~ge~~~~~~~ppi~v~  280 (1105)
T KOG1326|consen  208 LRSYIYQARALGAPDKDDESDPDAAVEFCG------QSKETEVVPG-TLNPTWDQTIIFDEVEIYGEAHLVLKNPPIRVF  280 (1105)
T ss_pred             hHHHHHHHHhhcCCCcccCCCchhhhhccc------ccceeEeecC-cCCCCccceeeccceeecCccchhhcCCCeEEE
Confidence            344456677777777778899999999887      6788988877 9999999998885211     111222246789


Q ss_pred             EEEecCCC-CCcceeEEEEeCcccccccCCCCCCCCCcceEEEEEeecCCCCCccEEEEEEEE
Q 021949           82 KIKSDGLL-GDKTVGEVIVPIKELLDSSSSSSSGDAKSMKFVTYQVRSSSGKPKGELHFSYKF  143 (305)
Q Consensus        82 ~V~d~~~~-~d~~IG~~~vpL~~l~~~~~~~~~~~g~~~~~~~~~l~~~~g~~~G~l~lsl~~  143 (305)
                      +|+|.+.. .++|+|+......-... .          ....|+++.+ ++...|.+.++..+
T Consensus       281 e~yd~dr~g~~ef~gr~~~~p~V~~~-~----------p~lkw~p~~r-g~~l~gd~l~a~el  331 (1105)
T KOG1326|consen  281 EVYDLDRSGINEFKGRKKQRPYVMVQ-C----------PALKWVPTMR-GAFLDGDVLIAAEL  331 (1105)
T ss_pred             EeehhhhhchHHhhcccccceEEEec-C----------CccceEEeec-ccccccchhHHHHH
Confidence            99998766 78999987776555442 1          1366777764 34556666655543

>PF14429 DOCK-C2: C2 domain in Dock180 and Zizimin proteins; PDB: 3L4C_A

Probab=96.49  E-value=0.052  Score=46.63  Aligned_cols=96  Identities=19%  Similarity=0.147  Sum_probs=51.0

Q ss_pred             cceEEEEEEEecCCCCCCCCCCCCcEEEEEEecCCCC---------------CCceEEeEecCCCCCCCeeeceEEEEec
Q 021949            4 YRALDLNLISAKHLKDVHLISKMDVYAVVSISGDHTI---------------KKQKVKSHVDRSGGSNPTWNFPIKFTFN   68 (305)
Q Consensus         4 ~~~L~V~vvsA~dL~~~~~~gk~dpYv~v~l~~~~~~---------------~~~~~kT~v~k~~~~nP~Wne~f~f~v~   68 (305)
                      ...|-|++.+++-=+. ......+..|+|++..++..               ......|.|... +.+|.|+|+|++.|+
T Consensus         6 rN~LYv~~~s~~f~k~-~k~~~rNi~v~v~lr~~d~~~~~~~~i~~~~~~~~~~~~~~S~v~yh-~k~P~f~deiKi~LP   83 (184)
T PF14429_consen    6 RNDLYVYPKSGNFSKS-KKSSARNIEVTVELRDSDGNIKPLPCIYSRSSGPSFVTSYYSSVYYH-NKNPQFNDEIKIQLP   83 (184)
T ss_dssp             -EEEEEEEEEEE-SSS-SSSS---EEEEEEEEETTS--B--S-EE-TTS--S-BS-EE----TT--SS-EEEEEEEEEE-
T ss_pred             eeeEEEEeCEEEECCC-CCCCcccEEEEEEEEeCCCCccccceEECCCCCCCcceEEEEEEEec-CCCCCccEEEEEEcC
Confidence            4567777777642111 11223456666666533211               134566666655 689999999999997


Q ss_pred             cchhccCceEEEEEEEecCCC--C--CcceeEEEEeCcc
Q 021949           69 QSLAQQNRLTLDFKIKSDGLL--G--DKTVGEVIVPIKE  103 (305)
Q Consensus        69 ~~~~~~~~~~L~v~V~d~~~~--~--d~~IG~~~vpL~~  103 (305)
                      ....  .+..|.|++++...-  .  +..+|.+.++|-+
T Consensus        84 ~~l~--~~~HLlFtf~h~s~~~~~~~~~~~g~a~lpL~~  120 (184)
T PF14429_consen   84 PDLF--PKHHLLFTFYHVSCKESKEKSKPFGYAFLPLMD  120 (184)
T ss_dssp             CCCC--TTEEEEEEEEE---SSSS-SS-EEEEEEEESB-
T ss_pred             chhc--ccEEEEEEEEeeccccccCccceeEEEEEEeee
Confidence            7643  336888998886543  2  2689999999988

>cd04012 C2A_PI3K_class_II C2 domain first repeat present in class II phosphatidylinositol 3-kinases (PI3Ks)

Probab=96.44  E-value=0.012  Score=50.02  Aligned_cols=98  Identities=15%  Similarity=0.126  Sum_probs=59.8

Q ss_pred             ceEEEEEEEecCCCCCCCCCCCCcEEEEEEecCCCCCCceEEeEecC---CCCCCCeeeceEEEEeccchhccCceEEEE
Q 021949            5 RALDLNLISAKHLKDVHLISKMDVYAVVSISGDHTIKKQKVKSHVDR---SGGSNPTWNFPIKFTFNQSLAQQNRLTLDF   81 (305)
Q Consensus         5 ~~L~V~vvsA~dL~~~~~~gk~dpYv~v~l~~~~~~~~~~~kT~v~k---~~~~nP~Wne~f~f~v~~~~~~~~~~~L~v   81 (305)
                      ..+.|+|.++.++.........|.||.+.|-.....-.....|+...   .-..+..|||.++|++.-..+ .+...|.|
T Consensus         8 ~~~~i~v~~~h~~~~~~~~~~~~~~v~~~l~~g~~~L~~~~~T~~~~~~~~f~~~~~Wnewl~F~i~i~~L-PrearL~i   86 (171)
T cd04012           8 DLLSVTVSSLHRIPPTWVQSFEDFYLSCSLYHGGRLLCSPVTTKPVKITKSFFPRVVWDEWIEFPIPVCQL-PRESRLVL   86 (171)
T ss_pred             ccEEEEEEEeecCChHHhhccccEEEEEEEEECCEECcCceeccccccccCccccccccceEECccchhcC-ChhHEEEE
Confidence            46889999999887654333578899988764321111222333211   112357799999998754443 34578999


Q ss_pred             EEEecCCCC----------CcceeEEEEeCcc
Q 021949           82 KIKSDGLLG----------DKTVGEVIVPIKE  103 (305)
Q Consensus        82 ~V~d~~~~~----------d~~IG~~~vpL~~  103 (305)
                      .||+.....          +..||.+.++|-+
T Consensus        87 tl~~~~~~~~~~~~~~~~~~~~lG~~~~~LFd  118 (171)
T cd04012          87 TLYGTTSSPDGGSNKQRMGPEELGWVSLPLFD  118 (171)
T ss_pred             EEEEEecCCccccccccccceEEEEEeEeeEc
Confidence            999865432          3466666666544

There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a N-terminal C2 domain, a PIK domain, and a kinase catalytic domain. Unlike class I and class III, class II PI3Ks have additionally a PX domain and a C-terminal C2 domain containing a nuclear localization signal both of which bind phospholipids though in a slightly different fashion. Class II PIK3s act downstream of receptors for growth factors, integrins, and chemokines. PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. C2 domains fold into an 8-standed beta-sandwich that c

>KOG1924 consensus RhoA GTPase effector DIA/Diaphanous [Signal transduction mechanisms; Cytoskeleton]

Probab=96.43  E-value=0.016  Score=58.95  Aligned_cols=8  Identities=25%  Similarity=0.497  Sum_probs=3.3

Q ss_pred             EEeCcccc
Q 021949           98 IVPIKELL  105 (305)
Q Consensus        98 ~vpL~~l~  105 (305)
                      .|++.+|+
T Consensus       453 ~id~~~li  460 (1102)
T KOG1924|consen  453 DIDLTELI  460 (1102)
T ss_pred             cCcHHHHH
Confidence            34444443

>cd08694 C2_Dock-A C2 domains found in Dedicator Of CytoKinesis (Dock) class A proteins

Probab=96.42  E-value=0.049  Score=47.21  Aligned_cols=58  Identities=19%  Similarity=0.162  Sum_probs=43.4

Q ss_pred             CceEEeEecCCCCCCCeeeceEEEEeccchhccCceEEEEEEEecCCC--CC---cceeEEEEeCc
Q 021949           42 KQKVKSHVDRSGGSNPTWNFPIKFTFNQSLAQQNRLTLDFKIKSDGLL--GD---KTVGEVIVPIK  102 (305)
Q Consensus        42 ~~~~kT~v~k~~~~nP~Wne~f~f~v~~~~~~~~~~~L~v~V~d~~~~--~d---~~IG~~~vpL~  102 (305)
                      ....+|.|... ..+|.|+|++++.|+....  ....|.|++++....  +|   +.+|-+.++|-
T Consensus        52 ~se~~S~V~Yh-~~~P~W~EtIKl~lP~~~~--~~~HL~FtfrH~S~~~~kd~~e~pfg~s~lpL~  114 (196)
T cd08694          52 IDEYKSVIYYQ-VDKPKWFETFKVAIPIEDF--KSSHLRFTFKHRSSNEAKDKSEKPFALSFVKLM  114 (196)
T ss_pred             ceeEEEEEEee-cCCCCCceeEEEecChhhC--CCeEEEEEEEeeccccccCCCCCceEEEEEeee
Confidence            46788888655 5799999999999977654  336788888876433  23   57999999875

Dock-A is one of 4 classes of Dock family proteins. The members here include: Dock180/Dock1, Dock2, and Dock5. Most of these members have been shown to be GEFs specific for Rac. Dock5 has not been well characterized to date, but most likely also is a GEF specific for Rac. In addition to the C2 domain (AKA Dock homology region (DHR)-1, CED-5, Dock180, MBC-zizimin homology (CZH) 1) and the DHR-2 (AKA CZH2, or Docker), which all Dock180-related proteins have, Dock-A members contain a proline-rich region and a SH3 domain upstream of the C2 domain. DHR-2 has the catalytic activity for Rac and/or Cdc42, but is structurally unrelated to the DH domain. The C2/DHR-1 domains of Dock180 and Dock4 have been shown to bind phosphatidylinositol-3, 4, 5-triphosphate (PtdIns(3,4,5)P3). The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen

>cd08695 C2_Dock-B C2 domains found in Dedicator Of CytoKinesis (Dock) class B proteins

Probab=96.40  E-value=0.051  Score=46.91  Aligned_cols=59  Identities=24%  Similarity=0.335  Sum_probs=44.0

Q ss_pred             CceEEeEecCCCCCCCeeeceEEEEeccchhccCceEEEEEEEecCCC--C-CcceeEEEEeCcc
Q 021949           42 KQKVKSHVDRSGGSNPTWNFPIKFTFNQSLAQQNRLTLDFKIKSDGLL--G-DKTVGEVIVPIKE  103 (305)
Q Consensus        42 ~~~~kT~v~k~~~~nP~Wne~f~f~v~~~~~~~~~~~L~v~V~d~~~~--~-d~~IG~~~vpL~~  103 (305)
                      ...++|.|... +.+|.|+|++++.|+.....  ...|.|++++....  . .+.+|-+.++|-+
T Consensus        52 ~se~~S~V~yH-~~~P~W~EtiKi~lP~~~~~--~~HL~FtfrH~S~~~k~~~~pfg~s~lpL~~  113 (189)
T cd08695          52 CSEYRSFVLYH-NNSPRWNETIKLPIPIDKFR--GSHLRFEFRHCSTKDKGEKKLFGFSFVPLMR  113 (189)
T ss_pred             cceEEEEEEEc-CCCCCCceeEEEecChhhCC--CeeEEEEEEEeeeccCCCCCceEEEEEeecc
Confidence            35788888776 68999999999999876543  36788888775433  2 3679999998743

Dock-B is one of 4 classes of Dock family proteins. The members here include: Dock3/MOCA (modifier of cell adhesion) and Dock4. Most of these members have been shown to be GEFs specific for Rac, although Dock4 has also been shown to interact indirectly with the Ras family GTPase Rap1, probably through Rap regulatory proteins. In addition to the C2 domain (AKA Dock homology region (DHR)-1, CED-5, Dock180, MBC-zizimin homology (CZH) 1) and the DHR-2 (AKA CZH2, or Docker), which all Dock180-related proteins have, Dock-B members contain a SH3 domain upstream of the C2 domain and a proline-rich region downstream. DHR-2 has the catalytic activity for Rac and/or Cdc42, but is structurally unrelated to the DH domain. The C2/DHR-1 domains of Dock180 and Dock4 have been shown to bind phosphatidylinositol-3, 4, 5-triphosphate (PtdIns(3,4,5)P3). The C2 domain was first identified in PKC. C2 domains fold int

>cd08397 C2_PI3K_class_III C2 domain present in class III phosphatidylinositol 3-kinases (PI3Ks)

Probab=96.25  E-value=0.015  Score=48.93  Aligned_cols=79  Identities=11%  Similarity=0.088  Sum_probs=52.5

Q ss_pred             CCCCcEEEEEEecCCCCCCceEEeEecCCCCCCCeeeceEEEEeccchhccCceEEEEEEEecCCC-CCcceeEEEEeCc
Q 021949           24 SKMDVYAVVSISGDHTIKKQKVKSHVDRSGGSNPTWNFPIKFTFNQSLAQQNRLTLDFKIKSDGLL-GDKTVGEVIVPIK  102 (305)
Q Consensus        24 gk~dpYv~v~l~~~~~~~~~~~kT~v~k~~~~nP~Wne~f~f~v~~~~~~~~~~~L~v~V~d~~~~-~d~~IG~~~vpL~  102 (305)
                      ...+.||.+.+-...........|....- +....|||-++|+|.-..+- ++..|.|.||+.... ....||.++++|-
T Consensus        28 ~~~~l~V~~~l~~~~~~L~~pv~T~~~~f-~~~~~WnEwl~fpI~i~dLP-~~a~L~iti~~~~~~~~~~~vg~~~~~lF  105 (159)
T cd08397          28 PNSDLFVTCQVFDDGKPLTLPVQTSYKPF-KNRRNWNEWLTLPIKYSDLP-RNSQLAITIWDVSGTGKAVPFGGTTLSLF  105 (159)
T ss_pred             CCCCEEEEEEEEECCEeccCcEEccccCC-CCCcccceeEEcccchhcCC-hhheEEEEEEEecCCCCceEEEEEEEeeE
Confidence            35788999887653211112334444333 46788999999987655443 347899999997654 4568999999866


Q ss_pred             cc
Q 021949          103 EL  104 (305)
Q Consensus       103 ~l  104 (305)
                      +.
T Consensus       106 d~  107 (159)
T cd08397         106 NK  107 (159)
T ss_pred             CC
Confidence            63

PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. These are the only domains identified in the class III PI3Ks present in this cd. In addition some PI3Ks contain a Ras-binding domain and/or a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Ty

>KOG1452 consensus Predicted Rho GTPase-activating protein [Signal transduction mechanisms]

Probab=96.20  E-value=0.012  Score=54.11  Aligned_cols=117  Identities=15%  Similarity=0.139  Sum_probs=74.5

Q ss_pred             ccceEEEEEEEecCCCCCCC--CCCCCcEEEEEEecCCCCCCceEEeEecCCCCCCCeeeceEEEEeccchhccCceEEE
Q 021949            3 SYRALDLNLISAKHLKDVHL--ISKMDVYAVVSISGDHTIKKQKVKSHVDRSGGSNPTWNFPIKFTFNQSLAQQNRLTLD   80 (305)
Q Consensus         3 ~~~~L~V~vvsA~dL~~~~~--~gk~dpYv~v~l~~~~~~~~~~~kT~v~k~~~~nP~Wne~f~f~v~~~~~~~~~~~L~   80 (305)
                      ..+.|.|.++..++|+-...  .-..+-||++..+.     ..+.||.|.. ++..=.|.|+|+++|-..      ..|+
T Consensus        49 ~tGiL~~H~~~GRGLr~~p~~kglt~~~ycVle~dr-----qh~aRt~vrs-~~~~f~w~e~F~~Dvv~~------~vl~  116 (442)
T KOG1452|consen   49 STGILYFHAYNGRGLRMTPQQKGLTVCFYCVLEPDR-----QHPARTRVRS-SGPGFAWAEDFKHDVVNI------EVLH  116 (442)
T ss_pred             ccceEEEEEecccccccChhccCceeeeeeeeeecc-----cCcccccccc-CCCCccchhhceeecccc------eeee
Confidence            46788999999999975432  23467899999875     2466676643 367778999999988654      3789


Q ss_pred             EEEEecCCC-CCcceeEEEEeCcccccccCCCCCCCCCcceEEEEEeecCCCCCccEEEEEEEEec
Q 021949           81 FKIKSDGLL-GDKTVGEVIVPIKELLDSSSSSSSGDAKSMKFVTYQVRSSSGKPKGELHFSYKFSE  145 (305)
Q Consensus        81 v~V~d~~~~-~d~~IG~~~vpL~~l~~~~~~~~~~~g~~~~~~~~~l~~~~g~~~G~l~lsl~~~~  145 (305)
                      +.||.|..- +++++=.-.+.+..+....     .+    +...+.     -+++|.+.|.+.+.+
T Consensus       117 ~lvySW~pq~RHKLC~~g~l~~~~v~rqs-----pd----~~~Al~-----lePrgq~~~r~~~~D  168 (442)
T KOG1452|consen  117 YLVYSWPPQRRHKLCHLGLLEAFVVDRQS-----PD----RVVALY-----LEPRGQPPLRLPLAD  168 (442)
T ss_pred             EEEeecCchhhccccccchhhhhhhhhcC-----Cc----ceeeee-----cccCCCCceecccCC
Confidence            999999766 6665433334444443222     11    122222     245677777766654

>PF00792 PI3K_C2: Phosphoinositide 3-kinase C2; InterPro: IPR002420 Phosphatidylinositol 3-kinase (PI3-kinase) (2

Probab=95.57  E-value=0.058  Score=44.30  Aligned_cols=77  Identities=14%  Similarity=0.100  Sum_probs=47.0

Q ss_pred             CcEEEEEEecCCCCCC-ceEEeEecCCCCCCCeeeceEEEEeccchhccCceEEEEEEEecCCC-CC----cceeEEEEe
Q 021949           27 DVYAVVSISGDHTIKK-QKVKSHVDRSGGSNPTWNFPIKFTFNQSLAQQNRLTLDFKIKSDGLL-GD----KTVGEVIVP  100 (305)
Q Consensus        27 dpYv~v~l~~~~~~~~-~~~kT~v~k~~~~nP~Wne~f~f~v~~~~~~~~~~~L~v~V~d~~~~-~d----~~IG~~~vp  100 (305)
                      +.||.+.|-.....-. ....|........++.|||.++|+|.-..+- +...|.|.||..+.. .+    ..||++.++
T Consensus         3 ~~~V~~~ly~g~~~L~~p~~~T~~~~~~~~~~~W~e~l~F~i~i~~LP-r~a~L~~~l~~~~~~~~~~~~~~~lgw~n~~   81 (142)
T PF00792_consen    3 KLYVECQLYHGGEPLCNPVQSTSYVPFSFSRPKWDEWLTFPIPISDLP-REARLCFTLYGVDSKKKSKKKKVPLGWVNLP   81 (142)
T ss_dssp             EEEEEEEEEETTEESS-EEEE-S-EESS-SSEEEEEEEEEEEEGGGS--TTEEEEEEEEEEECSTTT--EEEEEEEEEEE
T ss_pred             eEEEEEEEEECCEEeecCeeeccccccccccceEeeEEEeecChHHCC-hhHeEEEEEEEecCCCccccceeEEEEEEEE
Confidence            3566666653221111 1235554443126999999999987554443 347899999987655 33    689999998


Q ss_pred             Cccc
Q 021949          101 IKEL  104 (305)
Q Consensus       101 L~~l  104 (305)
                      |-+.
T Consensus        82 lFd~   85 (142)
T PF00792_consen   82 LFDY   85 (142)
T ss_dssp             SB-T
T ss_pred             eECC
Confidence            7775

7.1.137 from EC) is an enzyme that phosphorylates phosphoinositides on the 3-hydroxyl group of the inositol ring. The usually N-terminal C2 domain interacts mainly with the scaffolding helical domain of the enzyme, and exhibits only minor interactions with the catalytic domain []. The domain consists of two four-stranded antiparallel beta-sheets that form a beta-sandwich. Isolated C2 domain binds multilamellar phospholipid vesicles which suggests that this domain could play a role in membrane association. Membrane attachment by C2 domains is typically mediated by the loops connecting beta-strand regions that in other C2 domain-containing proteins are calcium-binding region; GO: 0016303 1-phosphatidylinositol-3-kinase activity, 0046854 phosphatidylinositol phosphorylation, 0048015 phosphatidylinositol-mediated signaling, 0005942 phosphatidylinositol 3-kinase complex; PDB: 1E8W_A 1E8X_A 1E7V_A 1E90_A 1E7U_A 3L54_A 1E8Z_A 2CHX_A 3ML8_A 3OAW_A ....

>smart00142 PI3K_C2 Phosphoinositide 3-kinase, region postulated to contain C2 domain

Probab=94.69  E-value=0.18  Score=38.84  Aligned_cols=79  Identities=13%  Similarity=0.035  Sum_probs=46.7

Q ss_pred             EEEEEEEecCCCCCCCCCCCCcEEEEEEecCCCCCCceEEeEecCCCCCCCeeeceEEEEeccchhccCceEEEEEEEec
Q 021949            7 LDLNLISAKHLKDVHLISKMDVYAVVSISGDHTIKKQKVKSHVDRSGGSNPTWNFPIKFTFNQSLAQQNRLTLDFKIKSD   86 (305)
Q Consensus         7 L~V~vvsA~dL~~~~~~gk~dpYv~v~l~~~~~~~~~~~kT~v~k~~~~nP~Wne~f~f~v~~~~~~~~~~~L~v~V~d~   86 (305)
                      +.+++...+++.........+.||.+.+-...........|..+. ...++.|||-++|++.-..+- +...|.|.||+.
T Consensus        13 ~~~~~~~~~~~~l~~~~~~~~l~v~~~l~~g~~~l~~pv~t~~~~-~~~~~~Wnewl~f~i~i~~LP-r~a~L~~~i~~~   90 (100)
T smart00142       13 LVITIALIHGIPLNWSRDYSDLYVEIQLYHGGKLLCLPVSTSYKP-FFPSVKWNEWLTFPIQISDLP-REARLCITIYEV   90 (100)
T ss_pred             eEEEEEEeeCCCcccccCcceEEEEEEEEECCEEccCcEEecccC-CCCCcccceeEEccCchhcCC-hhhEEEEEEEEe
Confidence            566677766665433222247899987764321111123444333 245689999999886544432 347899999985


Q ss_pred             C
Q 021949           87 G   87 (305)
Q Consensus        87 ~   87 (305)
                      .
T Consensus        91 ~   91 (100)
T smart00142       91 K   91 (100)
T ss_pred             e
Confidence            3

Outlier of C2 family.

>PF15625 CC2D2AN-C2: CC2D2A N-terminal C2 domain

Probab=94.19  E-value=0.21  Score=42.33  Aligned_cols=73  Identities=15%  Similarity=0.173  Sum_probs=54.9

Q ss_pred             CCCCcEEEEEEecCCCCCCceEEeEecCC-CCCCCeeeceEEEEeccchhccCceEEEEEEEecCCCCCcceeEEEEeCc
Q 021949           24 SKMDVYAVVSISGDHTIKKQKVKSHVDRS-GGSNPTWNFPIKFTFNQSLAQQNRLTLDFKIKSDGLLGDKTVGEVIVPIK  102 (305)
Q Consensus        24 gk~dpYv~v~l~~~~~~~~~~~kT~v~k~-~~~nP~Wne~f~f~v~~~~~~~~~~~L~v~V~d~~~~~d~~IG~~~vpL~  102 (305)
                      .+..-|++|.+.+     +.+.+|+...- ....-.+||.|.+.|..-.     ..|.|+||......+++|+++.|+|-
T Consensus        35 ~~~~~~ikl~~N~-----k~V~~T~~~~l~~dF~v~f~~~f~v~i~~~P-----esi~l~i~E~~~~~~~~la~v~vpvP  104 (168)
T PF15625_consen   35 QKTRYYIKLFFND-----KEVSRTRSRPLWSDFRVHFNEIFNVQITRWP-----ESIKLEIYEKSGLSDRLLAEVFVPVP  104 (168)
T ss_pred             hheeEEEEEEECC-----EEEEeeeeEecCCCeEEeccCEEEEEEecCC-----CEEEEEEEEccCccceEEEEEEeeCC
Confidence            3467899999886     46677765433 2445667888998886543     48999999988888999999999987


Q ss_pred             cccc
Q 021949          103 ELLD  106 (305)
Q Consensus       103 ~l~~  106 (305)
                      ....
T Consensus       105 ~~~~  108 (168)
T PF15625_consen  105 GSTV  108 (168)
T ss_pred             CCcc
Confidence            7654

>cd08679 C2_DOCK180_related C2 domains found in Dedicator Of CytoKinesis 1 (DOCK 180) and related proteins

Probab=94.10  E-value=0.85  Score=38.89  Aligned_cols=54  Identities=20%  Similarity=0.267  Sum_probs=39.1

Q ss_pred             eEecCCCCCCCeeeceEEEEeccchhccCceEEEEEEEecCCC------CCcceeEEEEeCcc
Q 021949           47 SHVDRSGGSNPTWNFPIKFTFNQSLAQQNRLTLDFKIKSDGLL------GDKTVGEVIVPIKE  103 (305)
Q Consensus        47 T~v~k~~~~nP~Wne~f~f~v~~~~~~~~~~~L~v~V~d~~~~------~d~~IG~~~vpL~~  103 (305)
                      |.++..+ .+|.|+|+|++.|+....  ....|.|++++....      ....+|-+.++|-+
T Consensus        56 ~sv~~~~-k~p~f~deiKi~LP~~l~--~~~HLlFtf~hv~~~~~~~~~~~~~~g~a~lpL~~  115 (178)
T cd08679          56 TSVVYYH-KNPVFNDEIKIQLPADLT--PQHHLLFTFYHVSSKKKQGDKEETPFGYAFLPLMD  115 (178)
T ss_pred             EEEEEcC-CCCCCceeEEEecCCccC--CCeEEEEEEEccccccccCCCccceEEEEEEeccc
Confidence            3344442 799999999999965532  236888999886532      35689999999877

Dock180 was first identified as an 180kd proto-oncogene product c-Crk-interacting protein involved in actin cytoskeletal changes. It is now known that it has Rac-specific GEF activity, but lacks the conventional Dbl homology (DH) domain. There are 10 additional related proteins that can be divided into four classes based on sequence similarity and domain organization: Dock-A which includes Dock180/Dock1, Dock2, and Dock5; Dock-B which includes Dock3/MOCA (modifier of cell adhesion) and Dock4; Dock-C which includes Dock6/Zir1, Dock7/Zir2, and Dock8/Zir3; and Dock-D, which includes Dock9/Zizimin1, Dock10/Zizimin3, and Dock11/Zizimin2/ACG (activated Cdc42-associated GEF). Most of members of classes Dock-A and Dock-B are the GEFs specific for Rac. Those of Dock-D are Cdc42-specific GEFs while those of Dock-C are the GEFs for both. All Dock180-related proteins have two common homolo

>KOG1327 consensus Copine [Signal transduction mechanisms]

Probab=93.60  E-value=0.2  Score=49.54  Aligned_cols=61  Identities=15%  Similarity=0.212  Sum_probs=45.2

Q ss_pred             CceEEeEecCCCCCCCeeeceEEEEeccchhccCceEEEEEEEecCC----C-CCcceeEEEEeCcccccc
Q 021949           42 KQKVKSHVDRSGGSNPTWNFPIKFTFNQSLAQQNRLTLDFKIKSDGL----L-GDKTVGEVIVPIKELLDS  107 (305)
Q Consensus        42 ~~~~kT~v~k~~~~nP~Wne~f~f~v~~~~~~~~~~~L~v~V~d~~~----~-~d~~IG~~~vpL~~l~~~  107 (305)
                      ....+|.++++ .+||.|.++|.+....+..    ..|.|++++.+.    + ..+|+|++...|.++...
T Consensus        40 ~e~~rte~i~~-~~~p~f~~~~~l~y~fE~v----Q~l~~~~~~~~~~~~~l~~~dflg~~~c~l~~ivs~  105 (529)
T KOG1327|consen   40 EEVGRTEVIRN-VLNPFFTKKFLLQYRFEKV----QLLRFEVYDIDSRTPDLSSADFLGTAECTLSQIVSS  105 (529)
T ss_pred             ccccceeeeec-cCCccceeeechhheeeee----eeEEEEEeecCCccCCcchhcccceeeeehhhhhhh
Confidence            34568999988 7999999988776544433    367788877543    2 578999999999998753

>PF09849 DUF2076: Uncharacterized protein conserved in bacteria (DUF2076); InterPro: IPR018648 This family of hypothetical prokaryotic proteins has no known function but includes putative perimplasmic ligand-binding sensor proteins

Probab=90.87  E-value=0.68  Score=41.71  Aligned_cols=19  Identities=21%  Similarity=0.517  Sum_probs=10.1

Q ss_pred             hhhhHHHHHHHHHHhhhhc
Q 021949          268 GTGLLGGMLGGLLIGDIVS  286 (305)
Q Consensus       268 ~~g~~~g~~~g~~~~~~~~  286 (305)
                      ++..++|+.||+||+++|+
T Consensus       141 A~~TAAGVAGG~lL~n~i~  159 (247)
T PF09849_consen  141 AAQTAAGVAGGMLLANGIE  159 (247)
T ss_pred             HHHHHHHHHHHHHHHHHHH
Confidence            3444555555666555544

>cd08697 C2_Dock-D C2 domains found in Dedicator Of CytoKinesis (Dock) class C proteins

Probab=90.87  E-value=3.5  Score=35.53  Aligned_cols=59  Identities=19%  Similarity=0.204  Sum_probs=43.1

Q ss_pred             CceEEeEecCCCCCCCeeeceEEEEeccchhccCceEEEEEEEecCCC----------CCcceeEEEEeCcc
Q 021949           42 KQKVKSHVDRSGGSNPTWNFPIKFTFNQSLAQQNRLTLDFKIKSDGLL----------GDKTVGEVIVPIKE  103 (305)
Q Consensus        42 ~~~~kT~v~k~~~~nP~Wne~f~f~v~~~~~~~~~~~L~v~V~d~~~~----------~d~~IG~~~vpL~~  103 (305)
                      .....|.|.-. +.+|.|+|++++.|+....  ....|.|+.++....          .+..+|-+.+||-+
T Consensus        55 ~~~~~s~V~yh-~k~P~f~dEiKI~LP~~l~--~~hHLlFtFyHvsc~~~~k~~~~~~~e~~~Gys~lPLl~  123 (185)
T cd08697          55 TTSAYAAVLHH-NQNPEFYDEIKIELPTQLH--EKHHLLFTFYHVSCDINKKGKKKDGVETPVGYAWLPLLK  123 (185)
T ss_pred             ceEEEEEEEEc-CCCCccceeEEEecCCcCC--CCeeEEEEEEeeccccccccccCCCccceEEEEEEeeec
Confidence            45677778766 5899999999999876643  235788888875421          13569999999865

Dock-D is one of 4 classes of Dock family proteins. The members here include: Dock9/Zizimin1, Dock10/Zizimin3, and Dock11/Zizimin2/ACG (activated Cdc42-associated GEF). Dock-D are Cdc42-specific GEFs. In addition to the C2 domain (AKA Dock homology region (DHR)-1, CED-5, Dock180, MBC-zizimin homology (CZH) 1) and the DHR-2 (AKA CZH2, or Docker), which all Dock180-related proteins have, Dock-D members contain a functionally uncharacterized domain and a PH domain upstream of the C2 domain. DHR-2 has the catalytic activity for Rac and/or Cdc42, but is structurally unrelated to the DH domain. The C2/DHR-1 domains of Dock180 and Dock4 have been shown to bind phosphatidylinositol-3, 4, 5-triphosphate (PtdIns(3,4,5)P3). The PH domain broadly binds to phospholipids and is thought to be involved in targeting the plasma membrane. The C2 domain was first identified in PKC. C2 domains fold into an 8-stande

>cd08696 C2_Dock-C C2 domains found in Dedicator Of CytoKinesis (Dock) class C proteins

Probab=90.84  E-value=0.78  Score=39.34  Aligned_cols=59  Identities=15%  Similarity=0.197  Sum_probs=42.6

Q ss_pred             CceEEeEecCCCCCCCeeeceEEEEeccchhccCceEEEEEEEecCCC-------CCcceeEEEEeCcc
Q 021949           42 KQKVKSHVDRSGGSNPTWNFPIKFTFNQSLAQQNRLTLDFKIKSDGLL-------GDKTVGEVIVPIKE  103 (305)
Q Consensus        42 ~~~~kT~v~k~~~~nP~Wne~f~f~v~~~~~~~~~~~L~v~V~d~~~~-------~d~~IG~~~vpL~~  103 (305)
                      .....|.|.-. +.+|.|+|+|++.|+....  ....|.|++++.+..       .++.+|-+.+||-+
T Consensus        53 ~~~~~S~V~yH-nk~P~f~DEiKi~LP~~l~--~~hHLlFtF~Hvs~~~k~~~~~~e~~~Gys~lPL~~  118 (179)
T cd08696          53 LTEAYTAVTYH-NKSPDFYDEIKIKLPADLT--DNHHLLFTFYHISCQKKQEGGSVETPIGYTWLPLLR  118 (179)
T ss_pred             ceeEEEEEEEe-CCCCcccceEEEEcCCCCC--CCeEEEEEEEEeeccccccCCCccceEEEEEEeeec
Confidence            45677777766 6899999999999976543  235788888874332       13569988888754

Dock-C is one of 4 classes of Dock family proteins. The members here include: Dock6/Zir1, Dock7/Zir2, and Dock8/Zir3. Dock-C members are GEFs for both Rac and Cdc42. In addition to the C2 domain (AKA Dock homology region (DHR)-1, CED-5, Dock180, MBC-zizimin homology (CZH) 1) and the DHR-2 (AKA CZH2, or Docker), which all Dock180-related proteins have, Dock-C members contain a functionally uncharacterized domain upstream of the C2 domain. DHR-2 has the catalytic activity for Rac and/or Cdc42, but is structurally unrelated to the DH domain. The C2/DHR-1 domains of Dock180 and Dock4 have been shown to bind phosphatidylinositol-3, 4, 5-triphosphate (PtdIns(3,4,5)P3). The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strand

>PF14909 SPATA6: Spermatogenesis-assoc protein 6

Probab=90.64  E-value=2.2  Score=35.00  Aligned_cols=91  Identities=13%  Similarity=0.036  Sum_probs=64.1

Q ss_pred             eEEEEEEEecCCCCCCCCCCCCcEEEEEEecCCCCCCceEEeEecCCCCCCCeeeceEEEEeccch--------hccCce
Q 021949            6 ALDLNLISAKHLKDVHLISKMDVYAVVSISGDHTIKKQKVKSHVDRSGGSNPTWNFPIKFTFNQSL--------AQQNRL   77 (305)
Q Consensus         6 ~L~V~vvsA~dL~~~~~~gk~dpYv~v~l~~~~~~~~~~~kT~v~k~~~~nP~Wne~f~f~v~~~~--------~~~~~~   77 (305)
                      .|+|+-+.|-+.-..   .+-|.|+.|++.+      +.++|+.... ..--.++|+|+|+-.-..        ......
T Consensus         3 eL~i~aVTCPGv~L~---~~~~vyL~v~~lg------~~~~T~~~pp-vFPllfhek~~FeK~F~~~~dp~~l~~~Le~e   72 (140)
T PF14909_consen    3 ELEIHAVTCPGVWLC---DKGDVYLSVCILG------QYKRTRCLPP-VFPLLFHEKFRFEKVFPNAVDPAQLADLLEDE   72 (140)
T ss_pred             EEEEEEEecCCeEeC---CCCCEEEEEEEcc------cEeecccCCC-cCCeeEeeEEEeEEEecCCCCHHHHHHHhhcC
Confidence            467777777665433   4679999999988      6888887665 344456899998631111        112345


Q ss_pred             EEEEEEEecCCCCCcceeEEEEeCccccc
Q 021949           78 TLDFKIKSDGLLGDKTVGEVIVPIKELLD  106 (305)
Q Consensus        78 ~L~v~V~d~~~~~d~~IG~~~vpL~~l~~  106 (305)
                      .+.||++.+..-..+.|+...-.++|++-
T Consensus        73 ~~~iELiQl~~~~g~iLA~ye~n~rDfLf  101 (140)
T PF14909_consen   73 TVYIELIQLVPPAGEILAYYEENTRDFLF  101 (140)
T ss_pred             cEEEEEEEEeCCCCcEEEEEeccccceEc
Confidence            78899988766557789999999999875

>KOG3543 consensus Ca2+-dependent activator protein [Signal transduction mechanisms]

Probab=89.89  E-value=2  Score=43.28  Aligned_cols=80  Identities=23%  Similarity=0.422  Sum_probs=56.8

Q ss_pred             eEEEEEEEecCCCCCCCCCCCCcEEEEEEecCCCCCCceEEeEecCCCCCCCeeeceEEEEeccchhccCceEEEEEEEe
Q 021949            6 ALDLNLISAKHLKDVHLISKMDVYAVVSISGDHTIKKQKVKSHVDRSGGSNPTWNFPIKFTFNQSLAQQNRLTLDFKIKS   85 (305)
Q Consensus         6 ~L~V~vvsA~dL~~~~~~gk~dpYv~v~l~~~~~~~~~~~kT~v~k~~~~nP~Wne~f~f~v~~~~~~~~~~~L~v~V~d   85 (305)
                      .++|.|++..+|+.+..+  .=+||++.+.+      .+..|.-..  ...|.|...=.|......     ..++|.+|.
T Consensus       342 smevvvmevqglksvapn--rivyctmeveg------eklqtdqae--askp~wgtqgdfstthpl-----pvvkvklft  406 (1218)
T KOG3543|consen  342 SMEVVVMEVQGLKSVAPN--RIVYCTMEVEG------EKLQTDQAE--ASKPKWGTQGDFSTTHPL-----PVVKVKLFT  406 (1218)
T ss_pred             eeeEEEeeeccccccCCC--eeEEEEEEecc------cccccchhh--hcCCCCCcCCCcccCCCC-----ceeEEEEEe
Confidence            478889999999876522  23799999887      355565433  468999977677655443     467888887


Q ss_pred             cCCC----CCcceeEEEEe
Q 021949           86 DGLL----GDKTVGEVIVP  100 (305)
Q Consensus        86 ~~~~----~d~~IG~~~vp  100 (305)
                      +...    .|+.+|++.+-
T Consensus       407 estgvlaledkelgrvil~  425 (1218)
T KOG3543|consen  407 ESTGVLALEDKELGRVILQ  425 (1218)
T ss_pred             ecceeEEeechhhCeEEEe
Confidence            7532    78899998774

>PF06219 DUF1005: Protein of unknown function (DUF1005); InterPro: IPR010410 This is a family of plant proteins with undetermined function

Probab=89.66  E-value=7.1  Score=37.67  Aligned_cols=114  Identities=16%  Similarity=0.227  Sum_probs=63.3

Q ss_pred             CCCcEEEEEEecCCCCCCceEEeEecCCCCCCC-ee-eceEEEEeccchhcc---------CceEEEEEEEecCC-----
Q 021949           25 KMDVYAVVSISGDHTIKKQKVKSHVDRSGGSNP-TW-NFPIKFTFNQSLAQQ---------NRLTLDFKIKSDGL-----   88 (305)
Q Consensus        25 k~dpYv~v~l~~~~~~~~~~~kT~v~k~~~~nP-~W-ne~f~f~v~~~~~~~---------~~~~L~v~V~d~~~-----   88 (305)
                      ...+||+|+|.+-+.   ++..-..+...+.++ .- +-.-.|.|++..++.         ....|+|.||.-+.     
T Consensus        35 sspCfC~IrL~~fP~---Qta~vPLi~~~~~~~p~~~~~Aa~F~Ld~s~l~~l~~~~~f~~~~~~L~i~VY~Gr~G~tCG  111 (460)
T PF06219_consen   35 SSPCFCEIRLKGFPS---QTAPVPLISSSEPEPPDSHSLAASFHLDKSDLRRLLAKPCFYSPRPCLEISVYTGRRGSTCG  111 (460)
T ss_pred             CCCeEEEEecCCCCc---cceeeeeccCCCCCCCCcCCcceEEecCHHHHHHHhCCCccccCCceEEEEEEECCCCCccc
Confidence            357899999987542   222222222212221 11 222456665544321         12579999998543     


Q ss_pred             --CCCcceeEEEEeCcccccccCCCCCCCCCcceEEEEEeecCCC----CCccEEEEEEEEeccC
Q 021949           89 --LGDKTVGEVIVPIKELLDSSSSSSSGDAKSMKFVTYQVRSSSG----KPKGELHFSYKFSEPT  147 (305)
Q Consensus        89 --~~d~~IG~~~vpL~~l~~~~~~~~~~~g~~~~~~~~~l~~~~g----~~~G~l~lsl~~~~~~  147 (305)
                        ...++||.++|+|.--.. .     +....+..-|+.+-+...    +...+|||.++.++..
T Consensus       112 v~~~~klLG~v~vpldl~~a-e-----~kp~v~hnGWi~iGk~~~~~~~~~~aeLHl~Vr~EpDP  170 (460)
T PF06219_consen  112 VGNSGKLLGKVRVPLDLKWA-E-----GKPVVFHNGWISIGKNKQGSGKSPSAELHLVVRAEPDP  170 (460)
T ss_pred             ccccceEEEEEEEEeccccc-c-----CCeeEEEccceecCCCCCCCCCCCcceEEEEEeccCCC
Confidence              256899999999873222 1     121123345666665321    2467899999987754

>PF14186 Aida_C2: Cytoskeletal adhesion; PDB: 2QZQ_A 2QZ5_A

Probab=88.06  E-value=1.7  Score=36.02  Aligned_cols=98  Identities=14%  Similarity=0.116  Sum_probs=51.6

Q ss_pred             ceEEEEEEEecCCCCCCCCCCCCcEEEEEEecCCCCC-CceEEeEecCCC-CCCCeeeceEEEEeccchhccCceEEEEE
Q 021949            5 RALDLNLISAKHLKDVHLISKMDVYAVVSISGDHTIK-KQKVKSHVDRSG-GSNPTWNFPIKFTFNQSLAQQNRLTLDFK   82 (305)
Q Consensus         5 ~~L~V~vvsA~dL~~~~~~gk~dpYv~v~l~~~~~~~-~~~~kT~v~k~~-~~nP~Wne~f~f~v~~~~~~~~~~~L~v~   82 (305)
                      ..|.|+|.+.. |++..  .-.|||+.|++....... ...+.|.+.... +..-.||...++...-+.+.. ...|.||
T Consensus        13 t~l~v~Iekig-lkda~--~~~~P~~tVSV~D~~G~~ve~~QdTpv~~~~~~~yv~f~~~v~lqtple~lp~-Gaai~fE   88 (147)
T PF14186_consen   13 TYLSVFIEKIG-LKDAS--QYIDPYFTVSVKDGNGKDVEPPQDTPVGSRREDNYVHFNNTVHLQTPLEKLPK-GAAIFFE   88 (147)
T ss_dssp             -EEEEEEEEEE--TTGG--G-EEEEEEEEEE-TTS-BSS--EE--S-SEEETTEEEEEEEEE-SS-GGGS-T-T-EEEEE
T ss_pred             ceEEEEEEEEE-ECChH--HccCCeEEEEEECCCCCCccccccCCCcccccCCEEEEcccEEEcCCHHHCCC-ceEEEEE
Confidence            34677776655 76654  336899999987544322 245667765221 233445655555443333333 4678899


Q ss_pred             EEecCCC--CCcceeEEEEeCccccc
Q 021949           83 IKSDGLL--GDKTVGEVIVPIKELLD  106 (305)
Q Consensus        83 V~d~~~~--~d~~IG~~~vpL~~l~~  106 (305)
                      ++|+...  +-...+++.+.++++..
T Consensus        89 ~kH~K~kk~k~S~kcw~fme~dei~~  114 (147)
T PF14186_consen   89 FKHYKPKKKKTSTKCWAFMELDEIKP  114 (147)
T ss_dssp             EEEEETTTTCEEEEEEEEEEGGG--S
T ss_pred             EEeeeccceeeeeeEEEEEEhhhccC
Confidence            9987655  33457899999988874

>PTZ00447 apical membrane antigen 1-like protein; Provisional

Probab=87.80  E-value=6.1  Score=37.25  Aligned_cols=100  Identities=14%  Similarity=0.142  Sum_probs=63.3

Q ss_pred             CCcEEEEEEecCCCCCCceEEeEecCCCCCCC-eeeceEEEEeccchhccCceEEEEEEEecCCCCCcceeEEEEeCccc
Q 021949           26 MDVYAVVSISGDHTIKKQKVKSHVDRSGGSNP-TWNFPIKFTFNQSLAQQNRLTLDFKIKSDGLLGDKTVGEVIVPIKEL  104 (305)
Q Consensus        26 ~dpYv~v~l~~~~~~~~~~~kT~v~k~~~~nP-~Wne~f~f~v~~~~~~~~~~~L~v~V~d~~~~~d~~IG~~~vpL~~l  104 (305)
                      -..|++++.+.      ...+|..+..+-.+- .-.+...+.+...     +.+|+|.||.....+..-||.+.+.+++-
T Consensus        74 khiyIef~~Gr------~d~TT~~IpTsKK~RI~IqqRV~IkIRQc-----DnTLkI~lfKKkLvkk~hIgdI~InIn~d  142 (508)
T PTZ00447         74 KHIYIIFSTDK------YDFTTDEIPTNKKNRIHIDQRVDIKIRQC-----DETLRVDLFTTKLTKKVHIGQIKIDINAS  142 (508)
T ss_pred             eeEEEEEEcCc------eEEEccccccCcCceEEEeeeeeeeeeec-----CceEEEEEEeccccceeEEEEEEecccHH
Confidence            45678887765      566664443321111 2234444444332     25899999998877888999999998764


Q ss_pred             ccccCCCCCCCCCcceEEEEEeecCCCCCccEEEEEEEEec
Q 021949          105 LDSSSSSSSGDAKSMKFVTYQVRSSSGKPKGELHFSYKFSE  145 (305)
Q Consensus       105 ~~~~~~~~~~~g~~~~~~~~~l~~~~g~~~G~l~lsl~~~~  145 (305)
                      +-..    .    -....||-++ ++|...+.|.||+-=..
T Consensus       143 IIdk----~----FPKnkWy~c~-kDGq~~cRIqLSFhKL~  174 (508)
T PTZ00447        143 VISK----S----FPKNEWFVCF-KDGQEICKVQMSFYKIQ  174 (508)
T ss_pred             HHhc----c----CCccceEEEe-cCCceeeeEEEEehhhh
Confidence            3222    1    1357799885 57888888888875433

>KOG1329 consensus Phospholipase D1 [Lipid transport and metabolism]

Probab=87.65  E-value=0.83  Score=47.72  Aligned_cols=72  Identities=19%  Similarity=0.325  Sum_probs=55.3

Q ss_pred             CCcEEEEEEecCCCCCCceEEeEecCCCCCCCeeeceEEEEeccchhccCceEEEEEEEecCCCC-CcceeEEEEeCccc
Q 021949           26 MDVYAVVSISGDHTIKKQKVKSHVDRSGGSNPTWNFPIKFTFNQSLAQQNRLTLDFKIKSDGLLG-DKTVGEVIVPIKEL  104 (305)
Q Consensus        26 ~dpYv~v~l~~~~~~~~~~~kT~v~k~~~~nP~Wne~f~f~v~~~~~~~~~~~L~v~V~d~~~~~-d~~IG~~~vpL~~l  104 (305)
                      ++.|+.+.+..     ....+|....+.-.+|.|++.|.+.+....     ..+++.+.+.+..+ .+++|.+.+++..+
T Consensus       138 ~e~Ylt~~l~~-----~~~~~t~~~~~f~e~s~~~f~~~~~~~h~~-----g~v~~~~~~~~~~G~s~~w~~v~~s~~~~  207 (887)
T KOG1329|consen  138 LENYLTVVLHK-----ARYRRTHVIYEFLENSRWSFSFDIGFAHKA-----GYVIFRVKGARVPGWSKRWGRVKISFLQY  207 (887)
T ss_pred             ccchheeeech-----hhhhchhhhhcccccchhhhhccccccccc-----cEEEEeecCCccccceeEEEEeccchhhh
Confidence            47888888876     355667666653478999988877665544     47888988888776 88999999999999


Q ss_pred             ccc
Q 021949          105 LDS  107 (305)
Q Consensus       105 ~~~  107 (305)
                      ..+
T Consensus       208 ~~~  210 (887)
T KOG1329|consen  208 CSG  210 (887)
T ss_pred             hcc
Confidence            863

>PF14924 DUF4497: Protein of unknown function (DUF4497)

Probab=86.31  E-value=0.63  Score=36.64  Aligned_cols=83  Identities=16%  Similarity=0.188  Sum_probs=50.5

Q ss_pred             eEEEEeccchhc--cCceEEEEEEEecCC---C-CCcceeEEEEeCcccccccCCCC-----CCCCCcceEEEEEeecCC
Q 021949           62 PIKFTFNQSLAQ--QNRLTLDFKIKSDGL---L-GDKTVGEVIVPIKELLDSSSSSS-----SGDAKSMKFVTYQVRSSS  130 (305)
Q Consensus        62 ~f~f~v~~~~~~--~~~~~L~v~V~d~~~---~-~d~~IG~~~vpL~~l~~~~~~~~-----~~~g~~~~~~~~~l~~~~  130 (305)
                      +.-|.++...+.  ..+..|++.+++...   . ...+||.+.|+|.++..+-....     .... ......|.|++..
T Consensus        12 ScLF~~~~~~L~~~l~~~pl~i~~~~~~~~~~~~~~~liG~~~i~l~~~~~~i~~~~~~~~~~p~s-~~~k~~f~L~~~~   90 (112)
T PF14924_consen   12 SCLFALTPEDLQQSLSSFPLYIVVKKVPPGFPTPPPMLIGSCPISLAEAFNRILKDSAECNGQPSS-KTIKGTFPLFDEN   90 (112)
T ss_pred             EEEEEcCHHHHHHHhhCCceEEEEEecCCCCCCCccceeeEEEecHHHHHHHHHHHHHhhccCCCc-hhhcceeEeecCC
Confidence            455555544432  123456776665432   2 55789999999998763210000     0000 1234578999988


Q ss_pred             CCCccEEEEEEEEec
Q 021949          131 GKPKGELHFSYKFSE  145 (305)
Q Consensus       131 g~~~G~l~lsl~~~~  145 (305)
                      ++..|+|.|.+++.-
T Consensus        91 ~~~~G~I~l~iRLsc  105 (112)
T PF14924_consen   91 GNPVGEISLYIRLSC  105 (112)
T ss_pred             CceeeeEEEEEEEec
Confidence            889999999999864

>smart00157 PRP Major prion protein

Probab=80.93  E-value=5.2  Score=34.31  Aligned_cols=22  Identities=32%  Similarity=0.528  Sum_probs=15.9

Q ss_pred             CcchhhhHHHHHHHHHHhhhhc
Q 021949          265 LGFGTGLLGGMLGGLLIGDIVS  286 (305)
Q Consensus       265 ~g~~~g~~~g~~~g~~~~~~~~  286 (305)
                      ...++|+++|+++|-+|+.+|+
T Consensus        91 ~aAgagAv~g~~~GY~lG~~m~  112 (217)
T smart00157       91 GAAAAGAVVGGLGGYMLGSAMS  112 (217)
T ss_pred             HhhhcchhhhhccccccccccC
Confidence            3456677778888888888765

The prion protein is a major component of scrapie-associated fibrils in Creutzfeldt-Jakob disease, kuru, Gerstmann-Straussler syndrome and bovine spongiform encephalopathy.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	305
1wfj_A	136	C2 Domain-Containing Protein From Putative Elicitor		2e-05

>pdb|1WFJ|A Chain A, C2 Domain-Containing Protein From Putative Elicitor- Responsive Gene Length = 136

Iteration: 1
 Score = 46.2 bits (108), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 27/99 (27%), Positives = 47/99 (47%), Gaps = 10/99 (10%)
Query: 7   LDLNLISAKHLKDVHLISKMDVYAVVSISGDHTIKKQKVKSHVDRSGGSNPTWNFPIKFT 66
           L++ L+SAK L+D   ++ MD Y  +      T + Q  KS+V    G+ P WN    FT
Sbjct: 12  LEVVLVSAKGLEDADFLNNMDPYVQL------TCRTQDQKSNVAEGMGTTPEWNETFIFT 65
Query: 67  FNQSLAQQNRLTLDFKIKSDGLLGDKTVGEVIVPIKELL 105
            ++   +      D  + ++    D  VGE  +P++ + 
Sbjct: 66  VSEGTTELKAKIFDKDVGTE----DDAVGEATIPLEPVF 100

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	305
1m2v_B	926	SEC24, protein transport protein SEC24, SEC24P, SE	7e-15
1m2v_B	926	SEC24, protein transport protein SEC24, SEC24P, SE	1e-12
1m2v_B	926	SEC24, protein transport protein SEC24, SEC24P, SE	8e-11
1m2v_B	926	SEC24, protein transport protein SEC24, SEC24P, SE	2e-10
1m2v_B	926	SEC24, protein transport protein SEC24, SEC24P, SE	1e-09
1m2v_B	926	SEC24, protein transport protein SEC24, SEC24P, SE	3e-09
1m2v_B	926	SEC24, protein transport protein SEC24, SEC24P, SE	8e-09
1m2v_B	926	SEC24, protein transport protein SEC24, SEC24P, SE	2e-08
1m2v_B	926	SEC24, protein transport protein SEC24, SEC24P, SE	9e-08
1m2v_B	926	SEC24, protein transport protein SEC24, SEC24P, SE	5e-06
1wfj_A	136	Putative elicitor-responsive gene; C2 domain, rike	6e-14
2nq3_A	173	Itchy homolog E3 ubiquitin protein ligase; C2 doma	6e-10
3m7f_B	176	E3 ubiquitin-protein ligase NEDD4; C2 domain, GRB1	3e-09
3b7y_A	153	E3 ubiquitin-protein ligase NEDD4; C2 domain, UBL-	5e-08
1rlw_A	126	Phospholipase A2, CALB domain; hydrolase, C2 domai	6e-08
2z73_A	448	Rhodopsin; visual pigment, GQ-type, G-protein coup	3e-07
2z73_A	448	Rhodopsin; visual pigment, GQ-type, G-protein coup	4e-06
1dqv_A	296	Synaptotagmin III; beta sandwich, calcium ION, C2	5e-07
1dqv_A	296	Synaptotagmin III; beta sandwich, calcium ION, C2	2e-05
2cjt_A	131	UNC-13 homolog A, MUNC13-1; phorbol-ester binding,	6e-07
2r83_A	284	Synaptotagmin-1; C2A-C2B, exocytosis, calcium, cel	1e-06
2r83_A	284	Synaptotagmin-1; C2A-C2B, exocytosis, calcium, cel	2e-04
1twf_A	1733	B220, DNA-directed RNA polymerase II largest subun	1e-06
1twf_A	1733	B220, DNA-directed RNA polymerase II largest subun	1e-04
1twf_A	1733	B220, DNA-directed RNA polymerase II largest subun	5e-04
1dx0_A	219	Prion protein; brain, repeat; NMR {Bos taurus} SCO	1e-06
3v1v_A	433	2-MIB synthase, 2-methylisoborneol synthase; class	1e-06
3v1v_A	433	2-MIB synthase, 2-methylisoborneol synthase; class	1e-04
3v1v_A	433	2-MIB synthase, 2-methylisoborneol synthase; class	6e-04
3v1v_A	433	2-MIB synthase, 2-methylisoborneol synthase; class	8e-04
3q2s_C	229	Cleavage and polyadenylation specificity factor S;	4e-06
3pgw_B	231	SM B; protein-RNA complex, U1 snRNA, SM fold, SM c	6e-06
3pgw_B	231	SM B; protein-RNA complex, U1 snRNA, SM fold, SM c	3e-05
3pgw_B	231	SM B; protein-RNA complex, U1 snRNA, SM fold, SM c	4e-05
3pgw_B	231	SM B; protein-RNA complex, U1 snRNA, SM fold, SM c	6e-05
2dmh_A	140	Myoferlin; beta-sandwich, FER-1-like protein 3, mu	6e-06
2cjs_A	167	UNC-13 homolog A, MUNC13-1; neurotransmitter trans	1e-05
2fk9_A	157	Protein kinase C, ETA type; ATP-binding, metal-bin	2e-05
1gmi_A	136	Protein kinase C, epsilon type; PKC, C2 domain, X-	2e-05
1deq_A	390	Fibrinogen (alpha chain); coiled-coil, blood clott	2e-05
1deq_A	390	Fibrinogen (alpha chain); coiled-coil, blood clott	7e-04
1rsy_A	152	Synaptotagmin I; calcium/phospholipid binding prot	3e-05
3dzy_A	467	Retinoic acid receptor RXR-alpha; DNA-binding, HOS	5e-05
3dzy_A	467	Retinoic acid receptor RXR-alpha; DNA-binding, HOS	5e-05
3pyc_A	132	E3 ubiquitin-protein ligase smurf1; phospholipid b	7e-05
3oun_A	157	Putative uncharacterized protein TB39.8; peptidogl	7e-05
3oun_A	157	Putative uncharacterized protein TB39.8; peptidogl	3e-04
3h0g_A	1752	DNA-directed RNA polymerase II subunit RPB1; trans	1e-04
3lvg_A	624	Clathrin heavy chain 1; SELF assembly, coated PIT,	4e-04
1cjy_A	749	CPLA2, protein (cytosolic phospholipase A2); lipid	6e-04

>1m2v_B SEC24, protein transport protein SEC24, SEC24P, SEC24 protein, abnormal nuclear; zinc-finger, beta barrel, VWA domain, gelsolin domain,; 2.75A {Saccharomyces cerevisiae} SCOP: a.71.2.1 b.2.8.1 c.62.1.2 d.109.2.1 g.41.10.1 Length = 926

 Score = 74.1 bits (181), Expect = 7e-15
 Identities = 21/120 (17%), Positives = 29/120 (24%), Gaps = 2/120 (1%)

Query: 152 HAKAGEPVTAYPAPMAAGSSSVPYAYPPPPQAGYGYPPPPPQGAAPNGAYPP--QQPGYG 209
           H K   P         A     P  + PP             G  P GA P   QQ    
Sbjct: 4   HKKRVYPQAQLQYGQNATPLQQPAQFMPPQDPAAAGMSYGQMGMPPQGAVPSMGQQQFLT 63

Query: 210 YPPPPPQQGYGYPPPPPQQGYGYPPPPPQQGYGYPPQQPGYGYPPVKPAKKSNGGLGFGT 269
                  Q            + +  P         PQ P     P++  ++      +G 
Sbjct: 64  PAQEQLHQQIDQATTSMNDMHLHNVPLVDPNAYMQPQVPVQMGTPLQQQQQPMAAPAYGQ 123

>1m2v_B SEC24, protein transport protein SEC24, SEC24P, SEC24 protein, abnormal nuclear; zinc-finger, beta barrel, VWA domain, gelsolin domain,; 2.75A {Saccharomyces cerevisiae} SCOP: a.71.2.1 b.2.8.1 c.62.1.2 d.109.2.1 g.41.10.1 Length = 926

 Score = 67.2 bits (163), Expect = 1e-12
 Identities = 14/109 (12%), Positives = 19/109 (17%)

Query: 146 PTVGKTHAKAGEPVTAYPAPMAAGSSSVPYAYPPPPQAGYGYPPPPPQGAAPNGAYPPQQ 205
           P          +   A              A P   Q  +  P         + A     
Sbjct: 22  PLQQPAQFMPPQDPAAAGMSYGQMGMPPQGAVPSMGQQQFLTPAQEQLHQQIDQATTSMN 81

Query: 206 PGYGYPPPPPQQGYGYPPPPPQQGYGYPPPPPQQGYGYPPQQPGYGYPP 254
             + +  P         P  P Q         Q        QP      
Sbjct: 82  DMHLHNVPLVDPNAYMQPQVPVQMGTPLQQQQQPMAAPAYGQPSAAMGQ 130

>1m2v_B SEC24, protein transport protein SEC24, SEC24P, SEC24 protein, abnormal nuclear; zinc-finger, beta barrel, VWA domain, gelsolin domain,; 2.75A {Saccharomyces cerevisiae} SCOP: a.71.2.1 b.2.8.1 c.62.1.2 d.109.2.1 g.41.10.1 Length = 926

 Score = 61.8 bits (149), Expect = 8e-11
 Identities = 14/103 (13%), Positives = 19/103 (18%)

Query: 155 AGEPVTAYPAPMAAGSSSVPYAYPPPPQAGYGYPPPPPQGAAPNGAYPPQQPGYGYPPPP 214
           AG        P      S+       P     +        + N  +    P        
Sbjct: 38  AGMSYGQMGMPPQGAVPSMGQQQFLTPAQEQLHQQIDQATTSMNDMHLHNVPLVDPNAYM 97

Query: 215 PQQGYGYPPPPPQQGYGYPPPPPQQGYGYPPQQPGYGYPPVKP 257
             Q       P QQ       P          Q       + P
Sbjct: 98  QPQVPVQMGTPLQQQQQPMAAPAYGQPSAAMGQNMRPMNQLYP 140

>1m2v_B SEC24, protein transport protein SEC24, SEC24P, SEC24 protein, abnormal nuclear; zinc-finger, beta barrel, VWA domain, gelsolin domain,; 2.75A {Saccharomyces cerevisiae} SCOP: a.71.2.1 b.2.8.1 c.62.1.2 d.109.2.1 g.41.10.1 Length = 926

 Score = 60.6 bits (146), Expect = 2e-10
 Identities = 15/103 (14%), Positives = 19/103 (18%)

Query: 155 AGEPVTAYPAPMAAGSSSVPYAYPPPPQAGYGYPPPPPQGAAPNGAYPPQQPGYGYPPPP 214
              P       +      +         +             PN    PQ P     P  
Sbjct: 51  GAVPSMGQQQFLTPAQEQLHQQIDQATTSMNDMHLHNVPLVDPNAYMQPQVPVQMGTPLQ 110

Query: 215 PQQGYGYPPPPPQQGYGYPPPPPQQGYGYPPQQPGYGYPPVKP 257
            QQ     P   Q               YP        PP+  
Sbjct: 111 QQQQPMAAPAYGQPSAAMGQNMRPMNQLYPIDLLTELPPPITD 153

>1m2v_B SEC24, protein transport protein SEC24, SEC24P, SEC24 protein, abnormal nuclear; zinc-finger, beta barrel, VWA domain, gelsolin domain,; 2.75A {Saccharomyces cerevisiae} SCOP: a.71.2.1 b.2.8.1 c.62.1.2 d.109.2.1 g.41.10.1 Length = 926

 Score = 58.3 bits (140), Expect = 1e-09
 Identities = 13/98 (13%), Positives = 18/98 (18%), Gaps = 2/98 (2%)

Query: 158 PVTAYPAPMAAGSSSVPYAYPPPPQAGYGYPPPPPQGAAPNGAYPPQQPGYGYPPPPPQQ 217
            +    A  + G                            +         Y  P  P Q 
Sbjct: 46  GMPPQGAVPSMGQQQFLTPAQEQLHQQIDQATTSMNDMHLHNVPLVDPNAYMQPQVPVQM 105

Query: 218 GYGYPPPPPQQGYGYPPPPPQQGYGYPPQQPGYGYPPV 255
             G P    QQ    P             +P     P+
Sbjct: 106 --GTPLQQQQQPMAAPAYGQPSAAMGQNMRPMNQLYPI 141

>1m2v_B SEC24, protein transport protein SEC24, SEC24P, SEC24 protein, abnormal nuclear; zinc-finger, beta barrel, VWA domain, gelsolin domain,; 2.75A {Saccharomyces cerevisiae} SCOP: a.71.2.1 b.2.8.1 c.62.1.2 d.109.2.1 g.41.10.1 Length = 926

 Score = 57.1 bits (137), Expect = 3e-09
 Identities = 12/103 (11%), Positives = 15/103 (14%)

Query: 146 PTVGKTHAKAGEPVTAYPAPMAAGSSSVPYAYPPPPQAGYGYPPPPPQGAAPNGAYPPQQ 205
              G ++ + G P       M       P       Q                    P  
Sbjct: 36  AAAGMSYGQMGMPPQGAVPSMGQQQFLTPAQEQLHQQIDQATTSMNDMHLHNVPLVDPNA 95

Query: 206 PGYGYPPPPPQQGYGYPPPPPQQGYGYPPPPPQQGYGYPPQQP 248
                 P            P        P         P  Q 
Sbjct: 96  YMQPQVPVQMGTPLQQQQQPMAAPAYGQPSAAMGQNMRPMNQL 138

>1m2v_B SEC24, protein transport protein SEC24, SEC24P, SEC24 protein, abnormal nuclear; zinc-finger, beta barrel, VWA domain, gelsolin domain,; 2.75A {Saccharomyces cerevisiae} SCOP: a.71.2.1 b.2.8.1 c.62.1.2 d.109.2.1 g.41.10.1 Length = 926

 Score = 55.6 bits (133), Expect = 8e-09
 Identities = 14/79 (17%), Positives = 20/79 (25%)

Query: 197 PNGAYPPQQPGYGYPPPPPQQGYGYPPPPPQQGYGYPPPPPQQGYGYPPQQPGYGYPPVK 256
               YP  Q  YG    P QQ   + PP      G                 G       
Sbjct: 5   KKRVYPQAQLQYGQNATPLQQPAQFMPPQDPAAAGMSYGQMGMPPQGAVPSMGQQQFLTP 64

Query: 257 PAKKSNGGLGFGTGLLGGM 275
             ++ +  +   T  +  M
Sbjct: 65  AQEQLHQQIDQATTSMNDM 83

>1m2v_B SEC24, protein transport protein SEC24, SEC24P, SEC24 protein, abnormal nuclear; zinc-finger, beta barrel, VWA domain, gelsolin domain,; 2.75A {Saccharomyces cerevisiae} SCOP: a.71.2.1 b.2.8.1 c.62.1.2 d.109.2.1 g.41.10.1 Length = 926

 Score = 54.4 bits (130), Expect = 2e-08
 Identities = 12/97 (12%), Positives = 14/97 (14%)

Query: 161 AYPAPMAAGSSSVPYAYPPPPQAGYGYPPPPPQGAAPNGAYPPQQPGYGYPPPPPQQGYG 220
                       +  A            P     A      P Q          P     
Sbjct: 61  FLTPAQEQLHQQIDQATTSMNDMHLHNVPLVDPNAYMQPQVPVQMGTPLQQQQQPMAAPA 120

Query: 221 YPPPPPQQGYGYPPPPPQQGYGYPPQQPGYGYPPVKP 257
           Y  P    G    P           + P        P
Sbjct: 121 YGQPSAAMGQNMRPMNQLYPIDLLTELPPPITDLTLP 157

>1m2v_B SEC24, protein transport protein SEC24, SEC24P, SEC24 protein, abnormal nuclear; zinc-finger, beta barrel, VWA domain, gelsolin domain,; 2.75A {Saccharomyces cerevisiae} SCOP: a.71.2.1 b.2.8.1 c.62.1.2 d.109.2.1 g.41.10.1 Length = 926

 Score = 52.5 bits (125), Expect = 9e-08
 Identities = 19/108 (17%), Positives = 25/108 (23%), Gaps = 3/108 (2%)

Query: 158 PVTAYPAPMAAGSSSVPYAYPPPPQAGYGYPPPPPQGAAPNGAYPPQQPGYGYPPPPPQQ 217
                     + +    +  P      Y  P  P Q   P            Y  P    
Sbjct: 69  LHQQIDQATTSMNDMHLHNVPLVDPNAYMQPQVPVQMGTPLQQQQQPMAAPAYGQPSAAM 128

Query: 218 GYGYPPPP---PQQGYGYPPPPPQQGYGYPPQQPGYGYPPVKPAKKSN 262
           G    P     P       PPP       PP         + P++ SN
Sbjct: 129 GQNMRPMNQLYPIDLLTELPPPITDLTLPPPPLVIPPERMLVPSELSN 176

>1m2v_B SEC24, protein transport protein SEC24, SEC24P, SEC24 protein, abnormal nuclear; zinc-finger, beta barrel, VWA domain, gelsolin domain,; 2.75A {Saccharomyces cerevisiae} SCOP: a.71.2.1 b.2.8.1 c.62.1.2 d.109.2.1 g.41.10.1 Length = 926

 Score = 47.1 bits (111), Expect = 5e-06
 Identities = 12/60 (20%), Positives = 17/60 (28%), Gaps = 4/60 (6%)

Query: 200 AYPPQQPGYGYPPPPPQQGYGYPPPPPQQGYGYPPPPPQQGYGYPPQ-QPGYGYPPVKPA 258
           ++  ++    YP    Q G    P      +  P  P   G  Y     P  G  P    
Sbjct: 2   SHHKKR---VYPQAQLQYGQNATPLQQPAQFMPPQDPAAAGMSYGQMGMPPQGAVPSMGQ 58

>1wfj_A Putative elicitor-responsive gene; C2 domain, riken structural genomics/proteomics initiative, RSGI, structural genomics, plant protein; NMR {Arabidopsis thaliana} SCOP: b.7.1.2 Length = 136

 Score = 66.6 bits (163), Expect = 6e-14
 Identities = 37/138 (26%), Positives = 58/138 (42%), Gaps = 22/138 (15%)

Query: 7   LDLNLISAKHLKDVHLISKMDVYAVVSISGDHTIKKQKVKSHVDRSGGSNPTWNFPIKFT 66
           L++ L+SAK L+D   ++ MD Y  +      T + Q  KS+V    G+ P WN    FT
Sbjct: 12  LEVVLVSAKGLEDADFLNNMDPYVQL------TCRTQDQKSNVAEGMGTTPEWNETFIFT 65

Query: 67  FNQSLAQQNRLTLDFKIK-SDGLLGDKTVGEVIVPIKELLDSSSSSSSGDAKSMKFVTYQ 125
            ++   +     L  KI   D    D  VGE  +P++ +             S+    Y 
Sbjct: 66  VSEGTTE-----LKAKIFDKDVGTEDDAVGEATIPLEPVF---------VEGSIPPTAYN 111

Query: 126 VRSSSGKPKGELHFSYKF 143
           V     + KGE+  +  F
Sbjct: 112 V-VKDEEYKGEIWVALSF 128

>2nq3_A Itchy homolog E3 ubiquitin protein ligase; C2 domain, UBL conjugation pathway, structural genomics consortium, SGC; 1.80A {Homo sapiens} SCOP: b.7.1.1 Length = 173

 Score = 56.4 bits (136), Expect = 6e-10
 Identities = 27/139 (19%), Positives = 49/139 (35%), Gaps = 25/139 (17%)

Query: 7   LDLNLISAKHLKDVHLISKMDVYAVVSISGDHTIKKQKVKSHVDRSGGSNPTWNFPIKFT 66
           L + +ISAK  ++         Y  V++ G      Q  K+    +  ++P W      T
Sbjct: 38  LQITVISAKLKENKKNWFGPSPYVEVTVDG------QSKKTEK-CNNTNSPKWKQ--PLT 88

Query: 67  FNQSLAQQNRLTLDFKIKS-DGLLGDKTVGEVIVPIKELLDSSSSSSSGDAKSMKFVTYQ 125
              +        L F++ S   L  D  +G   + I E L S++         ++ V   
Sbjct: 89  VIVT----PVSKLHFRVWSHQTLKSDVLLGTAALDIYETLKSNNM-------KLEEVVVT 137

Query: 126 VRSSSGK----PKGELHFS 140
           ++    K      G+L   
Sbjct: 138 LQLGGDKEPTETIGDLSIC 156

>3m7f_B E3 ubiquitin-protein ligase NEDD4; C2 domain, GRB10, SH2 domain, phosphoprotein, conjugation pathway, signaling protein-ligase complex; 2.00A {Mus musculus} Length = 176

 Score = 54.5 bits (131), Expect = 3e-09
 Identities = 32/176 (18%), Positives = 60/176 (34%), Gaps = 10/176 (5%)

Query: 7   LDLNLISAKHLKDVHLISKMDVYAVVSISGDHTIKKQKVKSHVDRSGGSNPTWNFPIKFT 66
           + + +I+   L    ++   D Y  V++    +     V++   +    NP WN   +  
Sbjct: 10  VRVKVIAGIGLAKKDILGASDPYVRVTLYDPMSGILTSVQTKTIKK-SLNPKWN--EEIL 66

Query: 67  FNQSLAQQNRLTLDFKI-KSDGLLGDKTVGEVIVPIKELLDSSSSSSSGDAKSMKFVTYQ 125
           F     +     + F++   + L  D  +G+V VP+  L   + +       + K     
Sbjct: 67  FRVLPQRH---RILFEVFDENRLTRDDFLGQVDVPLYPL--PTENPRMERPYTFKDFVLH 121

Query: 126 VRSSSGKPKGELHFSYKFSEPTVGKTHAKAGEPVTAYPAPMAAGSSSVPYAYPPPP 181
            RS   + KG L     +  P  G     A +     P  +           P PP
Sbjct: 122 PRSHKSRVKGYLRLKMTYL-PKNGSEDENADQAEELEPGWVVLDQPDAATHLPHPP 176

>3b7y_A E3 ubiquitin-protein ligase NEDD4; C2 domain, UBL-conjugation pathway, structural genomics consortium, SGC, cytoplasm; 1.80A {Homo sapiens} PDB: 2nsq_A Length = 153

 Score = 50.5 bits (121), Expect = 5e-08
 Identities = 27/138 (19%), Positives = 50/138 (36%), Gaps = 9/138 (6%)

Query: 7   LDLNLISAKHLKDVHLISKMDVYAVVSISGDHTIKKQKVKSHVDRSGGSNPTWNFPIKFT 66
           + + +I+   L    ++   D Y  V++          V++   +    NP WN   +  
Sbjct: 22  VRVRVIAGIGLAKKDILGASDPYVRVTLYDPMNGVLTSVQTKTIKK-SLNPKWN--EEIL 78

Query: 67  FNQSLAQQNRLTLDFKI-KSDGLLGDKTVGEVIVPIKELLDSSSSSSSGDAKSMKFVTYQ 125
           F     Q     L F++   + L  D  +G+V VP+  L   + +       + K     
Sbjct: 79  FRVHPQQH---RLLFEVFDENRLTRDDFLGQVDVPLYPL--PTENPRLERPYTFKDFVLH 133

Query: 126 VRSSSGKPKGELHFSYKF 143
            RS   + KG L     +
Sbjct: 134 PRSHKSRVKGYLRLKMTY 151

>1rlw_A Phospholipase A2, CALB domain; hydrolase, C2 domain; 2.40A {Homo sapiens} SCOP: b.7.1.1 Length = 126

 Score = 49.7 bits (119), Expect = 6e-08
 Identities = 19/106 (17%), Positives = 39/106 (36%), Gaps = 14/106 (13%)

Query: 3   SYRALDLNLISAKHLKDVH---LISKMDVYAVVSISGDHTIKKQKVKS-HVDRSGGSNPT 58
           S++   + ++ A  +       ++   D Y  + IS        + ++ H +     NP 
Sbjct: 2   SHK-FTVVVLRATKVTKGAFGDMLDTPDPYVELFISTT---PDSRKRTRHFNND--INPV 55

Query: 59  WNFPIKFTFNQSLAQQNRLTLDFKIKSDGLLGDKTVGEVIVPIKEL 104
           WN    F F     Q+N L     +     + D+T+G     +  +
Sbjct: 56  WNE--TFEFILDPNQENVLE--ITLMDANYVMDETLGTATFTVSSM 97

>2z73_A Rhodopsin; visual pigment, GQ-type, G-protein coupled receptor, chromophore, glycoprotein, lipoprotein, membrane, palmitate phosphorylation; HET: BOG RET PLM TWT PC1; 2.50A {Todarodes pacificus} PDB: 3aym_A* 3ayn_A* 2ziy_A* Length = 448

 Score = 50.3 bits (120), Expect = 3e-07
 Identities = 35/100 (35%), Positives = 38/100 (38%), Gaps = 7/100 (7%)

Query: 144 SEPTVGKTHAKAGEPVTAYPAPMAAGSSSVPYAYPPPPQAGYGYPPPPPQGAAPNGAYPP 203
            +    +T   AGE   A P+  AA       A     Q      PP      P G  P 
Sbjct: 345 EDDKDAETEIPAGESSDAAPSADAAQMKE-MMAMMQKMQQQQAAYPPQGYAPPPQGYPPQ 403

Query: 204 QQPGYGYPPPP-PQQGYGYPPP--PPQQGYGYPPPPPQQG 240
             P  GYPP   P QGY  PP   PPQ   G PP  P QG
Sbjct: 404 GYPPQGYPPQGYPPQGYPPPPQGAPPQ---GAPPAAPPQG 440

>2z73_A Rhodopsin; visual pigment, GQ-type, G-protein coupled receptor, chromophore, glycoprotein, lipoprotein, membrane, palmitate phosphorylation; HET: BOG RET PLM TWT PC1; 2.50A {Todarodes pacificus} PDB: 3aym_A* 3ayn_A* 2ziy_A* Length = 448

 Score = 46.8 bits (111), Expect = 4e-06
 Identities = 30/97 (30%), Positives = 33/97 (34%), Gaps = 12/97 (12%)

Query: 164 APMAAGSSSVPYAYPPPPQAGYGYPPPPPQGAAPNGAYPPQQPGYGYPPPPPQQGYGYPP 223
            P    S + P A     +          Q  A      P Q     P   P QGY  P 
Sbjct: 354 IPAGESSDAAPSADAAQMKEMMAMMQKMQQQQAA----YPPQGYAPPPQGYPPQGY-PPQ 408

Query: 224 PPPQQGYGYPPPPPQQGYGYPPQ-QPGYGYPPVKPAK 259
             P QGY      P QGY  PPQ  P  G PP  P +
Sbjct: 409 GYPPQGY------PPQGYPPPPQGAPPQGAPPAAPPQ 439

>1dqv_A Synaptotagmin III; beta sandwich, calcium ION, C2 domain, endocytosis/exocytosis complex; 3.20A {Rattus rattus} SCOP: b.7.1.2 b.7.1.2 PDB: 3hn8_A Length = 296

 Score = 49.4 bits (118), Expect = 5e-07
 Identities = 37/179 (20%), Positives = 62/179 (34%), Gaps = 28/179 (15%)

Query: 5   RALDLNLISAKHLKDVHLISKMDVYAVVSISGDHTIKKQKVKSHVDRSGGSNPTWNFPIK 64
             L + ++ A  L         D Y  + +  D   +K+K ++ V R    NP +N    
Sbjct: 20  DQLVVRILQALDLPAKDSNGFSDPYVKIYLLPD---RKKKFQTKVHR-KTLNPIFNE--T 73

Query: 65  FTFNQSLAQQNRLTLDFKIKS-DGLLGDKTVGEVIVPIKELLDSSSSSSSGDAKSMKFVT 123
           F F+  LA+  +  L F +   D       +G+V++               +    + + 
Sbjct: 74  FQFSVPLAELAQRKLHFSVYDFDRFSRHDLIGQVVLDNL--------LELAEQPPDRPLW 125

Query: 124 YQVRSSSGKP--KGELHFSYKFSEPTVGKTHAKAGEPVTAYPA----PMAAGSSSVPYA 176
             +     +    GEL+FS  +  PT G         VT   A     M     S PY 
Sbjct: 126 RDILEGGSEKADLGELNFSLCYL-PTAGLLT------VTIIKASNLKAMDLTGFSDPYV 177

>1dqv_A Synaptotagmin III; beta sandwich, calcium ION, C2 domain, endocytosis/exocytosis complex; 3.20A {Rattus rattus} SCOP: b.7.1.2 b.7.1.2 PDB: 3hn8_A Length = 296

 Score = 44.1 bits (104), Expect = 2e-05
 Identities = 20/99 (20%), Positives = 41/99 (41%), Gaps = 5/99 (5%)

Query: 7   LDLNLISAKHLKDVHLISKMDVYAVVSISGDHTIKKQKVKSHVDRSGGSNPTWNFPIKFT 66
           L + +I A +LK + L    D Y   S+  +   + +K K+ + +    NPT+N      
Sbjct: 154 LTVTIIKASNLKAMDLTGFSDPYVKASLISEGR-RLKKRKTSI-KKNTLNPTYNE--ALV 209

Query: 67  FNQSLAQQNRLTLDFKIKSDGLLG-DKTVGEVIVPIKEL 104
           F+ +      + L   +     +G ++ +G   V  +  
Sbjct: 210 FDVAPESVENVGLSIAVVDYDCIGHNEVIGVCRVGPEAA 248

>2cjt_A UNC-13 homolog A, MUNC13-1; phorbol-ester binding, neurotransmitter release, RIM, MUNC13 domains, exocytosis, metal-binding; 1.44A {Rattus norvegicus} SCOP: b.7.1.1 Length = 131

 Score = 46.9 bits (111), Expect = 6e-07
 Identities = 21/101 (20%), Positives = 38/101 (37%), Gaps = 13/101 (12%)

Query: 12  ISAKHLKDVHLISKMDVYAVVSISGDHTIKKQKVKSHVDRSGGSNPTWNFPIKFTFNQSL 71
           +  K  K      K + Y  +       ++  K  +   R  GS P+W     F F  + 
Sbjct: 9   VGVKKAKFDGAQEKFNTYVTL------KVQNVKSTTIAVR--GSQPSWE--QDFMFEINR 58

Query: 72  AQQNRLTLDFKIKSDGLLGDKTVGEVIVPIKELLDSSSSSS 112
                  L  ++ + GL+ D  VG V +P++ +  S+    
Sbjct: 59  LDLG---LTVEVWNKGLIWDTMVGTVWIPLRTIRQSNEEGP 96

>2r83_A Synaptotagmin-1; C2A-C2B, exocytosis, calcium, cell junction, cytoplasmic vesicle, glycoprotein, lipoprotein, membrane, metal-binding palmitate; 2.70A {Homo sapiens} SCOP: b.7.1.2 Length = 284

 Score = 48.3 bits (115), Expect = 1e-06
 Identities = 42/177 (23%), Positives = 66/177 (37%), Gaps = 25/177 (14%)

Query: 5   RALDLNLISAKHLKDVHLISKMDVYAVVSISGDHTIKKQKVKSHVDRSGGSNPTWNFPIK 64
             L + +I A  L  + +    D Y  V +  D   KK+K ++ V R    NP +N   +
Sbjct: 19  NQLLVGIIQAAELPALDMGGTSDPYVKVFLLPD---KKKKFETKVHR-KTLNPVFNE--Q 72

Query: 65  FTFNQSLAQQNRLTLDFKIKS-DGLLGDKTVGEVIVPIKELLDSSSSSSSGDAKSMKFVT 123
           FTF    ++    TL   +   D       +GE  VP+  +     +    D +S +   
Sbjct: 73  FTFKVPYSELAGKTLVMAVYDFDRFSKHDIIGEFKVPMNTVDFGHVTEEWRDLQSAE--- 129

Query: 124 YQVRSSSGKPKGELHFSYKFSEPTVGKTHAKAGEPVTAYPA----PMAAGSSSVPYA 176
                   +  G++ FS ++  PT GK        V    A     M  G  S PY 
Sbjct: 130 ----KEEQEKLGDICFSLRY-VPTAGKLT------VVILEAKNLKKMDVGGLSDPYV 175

>2r83_A Synaptotagmin-1; C2A-C2B, exocytosis, calcium, cell junction, cytoplasmic vesicle, glycoprotein, lipoprotein, membrane, metal-binding palmitate; 2.70A {Homo sapiens} SCOP: b.7.1.2 Length = 284

 Score = 40.9 bits (96), Expect = 2e-04
 Identities = 20/100 (20%), Positives = 43/100 (43%), Gaps = 5/100 (5%)

Query: 5   RALDLNLISAKHLKDVHLISKMDVYAVVSISGDHTIKKQKVKSHVDRSGGSNPTWNFPIK 64
             L + ++ AK+LK + +    D Y  + +  +    K+K K+ + +    NP +N    
Sbjct: 150 GKLTVVILEAKNLKKMDVGGLSDPYVKIHLMQNGKRLKKK-KTTI-KKNTLNPYYNE--S 205

Query: 65  FTFNQSLAQQNRLTLDFKIKSDGLLG-DKTVGEVIVPIKE 103
           F+F     Q  ++ +   +     +G +  +G+V V    
Sbjct: 206 FSFEVPFEQIQKVQVVVTVLDYDKIGKNDAIGKVFVGYNS 245

>1twf_A B220, DNA-directed RNA polymerase II largest subunit; transcription, mRNA, multiprotein complex; HET: UTP; 2.30A {Saccharomyces cerevisiae} SCOP: e.29.1.2 PDB: 1i3q_A 1i6h_A 1k83_A* 1nik_A 1nt9_A 1pqv_A 1r5u_A 1r9s_A* 1r9t_A* 1sfo_A* 1twa_A* 1twc_A* 1i50_A* 1twg_A* 1twh_A* 1wcm_A 1y1v_A 1y1w_A 1y1y_A 1y77_A* ... Length = 1733

 Score = 48.9 bits (116), Expect = 1e-06
 Identities = 29/164 (17%), Positives = 38/164 (23%), Gaps = 15/164 (9%)

Query: 100  PIKELLDSSSSSSSGDAKSMKFVTYQVRSSSGKPKGELHFSYKFSEPTVGKTHAKAGEPV 159
             + + +     +   D +      Y   S       ++     FS P             
Sbjct: 1449 SLVKYMPEQKITEIEDGQDGGVTPYSNESGLVNADLDVKDELMFS-PL-------VDSGS 1500

Query: 160  TAYPAPMAAGSSSVPYAYPPPPQAGYGYPPPPPQGAAPNGAYPPQQPGYGYPPPPPQ-QG 218
                A          Y     P   YG  P  P     +  + P  P Y    P      
Sbjct: 1501 NDAMAGGFTAYGGADYGEATSPFGAYGEAPTSPGFGVSSPGFSPTSPTYSPTSPAYSPTS 1560

Query: 219  YGYPPPPPQQGYGYPPPPPQQGYGYPPQQPGY-----GYPPVKP 257
              Y P  P      P   P     Y P  P Y      Y P  P
Sbjct: 1561 PSYSPTSPSYSPTSPSYSPTSP-SYSPTSPSYSPTSPSYSPTSP 1603

>1twf_A B220, DNA-directed RNA polymerase II largest subunit; transcription, mRNA, multiprotein complex; HET: UTP; 2.30A {Saccharomyces cerevisiae} SCOP: e.29.1.2 PDB: 1i3q_A 1i6h_A 1k83_A* 1nik_A 1nt9_A 1pqv_A 1r5u_A 1r9s_A* 1r9t_A* 1sfo_A* 1twa_A* 1twc_A* 1i50_A* 1twg_A* 1twh_A* 1wcm_A 1y1v_A 1y1w_A 1y1y_A 1y77_A* ... Length = 1733

 Score = 42.4 bits (99), Expect = 1e-04
 Identities = 28/113 (24%), Positives = 37/113 (32%), Gaps = 17/113 (15%)

Query: 158  PVTAYPAPMAAGSSSVPYAYPPPPQAGYGYPPPPPQGAAPNGAYPPQQPGYGYPPPPPQ- 216
            P +   +P +   S    +Y P       Y P  P  +  + +Y P  P Y    P    
Sbjct: 1628 PTSPSYSPTSPSYSPTSPSYSP---TSPSYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSP 1684

Query: 217  QGYGYPPPPPQQGYGYPPPPPQQGYGYPPQQPGY-----GYPPVKPAKKSNGG 264
                Y P  P     Y P  P     Y P  PGY      Y P +  +K N  
Sbjct: 1685 TSPSYSPTSPN----YSPTSPS----YSPTSPGYSPGSPAYSPKQDEQKHNEN 1729

>1twf_A B220, DNA-directed RNA polymerase II largest subunit; transcription, mRNA, multiprotein complex; HET: UTP; 2.30A {Saccharomyces cerevisiae} SCOP: e.29.1.2 PDB: 1i3q_A 1i6h_A 1k83_A* 1nik_A 1nt9_A 1pqv_A 1r5u_A 1r9s_A* 1r9t_A* 1sfo_A* 1twa_A* 1twc_A* 1i50_A* 1twg_A* 1twh_A* 1wcm_A 1y1v_A 1y1w_A 1y1y_A 1y77_A* ... Length = 1733

 Score = 40.8 bits (95), Expect = 5e-04
 Identities = 27/125 (21%), Positives = 33/125 (26%), Gaps = 15/125 (12%)

Query: 146  PTVGKTHAKAGEPVTAYPAPMAAGSSSVPYAYPPPPQAGYGYPPPPPQGAAPNGAYPPQQ 205
            PT       +       P+      S  P + P        Y P  P  +  + +Y P  
Sbjct: 1558 PTSPSYSPTSPSYSPTSPSYSPTSPSYSPTS-PSYSPTSPSYSPTSPSYSPTSPSYSPTS 1616

Query: 206  PGY-----GYPPPPPQQGYGYPPPPPQQGYGYPPPPPQQGY---GYPPQQPGY-----GY 252
            P Y      Y P  P       P        Y P  P        Y P  P Y      Y
Sbjct: 1617 PSYSPTSPSYSPTSP-SYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPSYSPTSPSY 1675

Query: 253  PPVKP 257
             P  P
Sbjct: 1676 SPTSP 1680

>1dx0_A Prion protein; brain, repeat; NMR {Bos taurus} SCOP: d.6.1.1 PDB: 1dx1_A 1qlx_A 1qlz_A Length = 219

 Score = 47.5 bits (112), Expect = 1e-06
 Identities = 24/116 (20%), Positives = 34/116 (29%), Gaps = 3/116 (2%)

Query: 174 PYAYPPPPQAGYGYPPPPPQGAAPNGAYPPQQPGYGYPPPPPQQGYGYPPP---PPQQGY 230
              +        G   P      P G     QP  G    P   G+G P         G 
Sbjct: 9   GGGWNTGGSRYPGQGSPGGNRYPPQGGGGWGQPHGGGWGQPHGGGWGQPHGGGWGQPHGG 68

Query: 231 GYPPPPPQQGYGYPPQQPGYGYPPVKPAKKSNGGLGFGTGLLGGMLGGLLIGDIVS 286
           G+  P    G+G       +  P        +       G + G LGG ++G  +S
Sbjct: 69  GWGQPHGGGGWGQGGTHGQWNKPSKPKTNMKHVAGAAAAGAVVGGLGGYMLGSAMS 124

>3v1v_A 2-MIB synthase, 2-methylisoborneol synthase; class I terpenoid cyclase fold, DDXXXXD motif, NDXXSXXXE MOT methylisoborneol biosynthesis; HET: GST; 1.80A {Streptomyces coelicolor} PDB: 3v1x_A* Length = 433

 Score = 48.2 bits (114), Expect = 1e-06
 Identities = 19/111 (17%), Positives = 26/111 (23%), Gaps = 3/111 (2%)

Query: 144 SEPTVGKTHAKAGEPVTAYPAPMAAGSSSVPYAYPPPPQAGYGYPPPPPQGAAPNGAYPP 203
                     +    V    +  +A S  +   +PP        P PPP  A   G  P 
Sbjct: 7   HHHHSSGLVPRGSHMVIPSASVTSAASDFLAALHPPVTVPD---PAPPPPPAPAAGNPPD 63

Query: 204 QQPGYGYPPPPPQQGYGYPPPPPQQGYGYPPPPPQQGYGYPPQQPGYGYPP 254
              G        +   G           Y   P  +     P   G   P 
Sbjct: 64  TVTGDSVLQRILRGPTGPGTTSLAPAVRYGRQPGPEAPASAPPAAGRAVPG 114

>3v1v_A 2-MIB synthase, 2-methylisoborneol synthase; class I terpenoid cyclase fold, DDXXXXD motif, NDXXSXXXE MOT methylisoborneol biosynthesis; HET: GST; 1.80A {Streptomyces coelicolor} PDB: 3v1x_A* Length = 433

 Score = 42.1 bits (98), Expect = 1e-04
 Identities = 19/104 (18%), Positives = 25/104 (24%), Gaps = 7/104 (6%)

Query: 155 AGEPVTAYPAPMAAGSSSVPYAYPPPPQAGYGYPPPPPQGAAPNGAYPPQQPG-YGYPPP 213
           +    +A    +AA    V    P PP         PP     +        G  G    
Sbjct: 25  SASVTSAASDFLAALHPPVTVPDPAPPPPPAPAAGNPPDTVTGDSVLQRILRGPTGPGTT 84

Query: 214 PPQQGYGYPPPPPQQGYGYPPPPPQQGYGYPPQQPGYGYPPVKP 257
                  Y   P  +     PP            PG  + PV  
Sbjct: 85  SLAPAVRYGRQPGPEAPASAPPAAG------RAVPGLYHHPVPE 122

>3v1v_A 2-MIB synthase, 2-methylisoborneol synthase; class I terpenoid cyclase fold, DDXXXXD motif, NDXXSXXXE MOT methylisoborneol biosynthesis; HET: GST; 1.80A {Streptomyces coelicolor} PDB: 3v1x_A* Length = 433

 Score = 40.1 bits (93), Expect = 6e-04
 Identities = 14/79 (17%), Positives = 19/79 (24%), Gaps = 5/79 (6%)

Query: 172 SVPYAYPPPPQAGYGYPPPPPQGAAPNGAYPPQQPGYGYPP-PPPQQGYGYPPPPPQQGY 230
           S  + +           P       P+ +       +     PP       PPPPP    
Sbjct: 3   SSHHHHHHSSGL----VPRGSHMVIPSASVTSAASDFLAALHPPVTVPDPAPPPPPAPAA 58

Query: 231 GYPPPPPQQGYGYPPQQPG 249
           G PP              G
Sbjct: 59  GNPPDTVTGDSVLQRILRG 77

>3v1v_A 2-MIB synthase, 2-methylisoborneol synthase; class I terpenoid cyclase fold, DDXXXXD motif, NDXXSXXXE MOT methylisoborneol biosynthesis; HET: GST; 1.80A {Streptomyces coelicolor} PDB: 3v1x_A* Length = 433

 Score = 39.7 bits (92), Expect = 8e-04
 Identities = 14/96 (14%), Positives = 23/96 (23%), Gaps = 3/96 (3%)

Query: 166 MAAGSSSVPYAYPPPPQAGYGYPPPPPQGAAPNGAYPPQQPGYGYP---PPPPQQGYGYP 222
           M +      ++    P+  +   P     +A +       P    P   PPPP       
Sbjct: 1   MGSSHHHHHHSSGLVPRGSHMVIPSASVTSAASDFLAALHPPVTVPDPAPPPPPAPAAGN 60

Query: 223 PPPPQQGYGYPPPPPQQGYGYPPQQPGYGYPPVKPA 258
           PP    G        +   G             +  
Sbjct: 61  PPDTVTGDSVLQRILRGPTGPGTTSLAPAVRYGRQP 96

>3q2s_C Cleavage and polyadenylation specificity factor S; CFIM, CFIM25, CFIM68, CPSF5, CPSF6, CPSF, 3' END processing, processing, cleavage factor; 2.90A {Homo sapiens} PDB: 3q2t_C Length = 229

 Score = 46.2 bits (109), Expect = 4e-06
 Identities = 17/82 (20%), Positives = 18/82 (21%)

Query: 172 SVPYAYPPPPQAGYGYPPPPPQGAAPNGAYPPQQPGYGYPPPPPQQGYGYPPPPPQQGYG 231
            V                   Q    +G      PG       PQ G G    P     G
Sbjct: 143 VVTPVNKQFLSQFEMQSRKTTQSGQMSGEGKAGPPGGSSRAAFPQGGRGRGRFPGAVPGG 202

Query: 232 YPPPPPQQGYGYPPQQPGYGYP 253
              P P    G PP  P     
Sbjct: 203 DRFPGPAGPGGPPPPFPAGQTH 224

>3pgw_B SM B; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_A Length = 231

 Score = 45.8 bits (108), Expect = 6e-06
 Identities = 29/132 (21%), Positives = 36/132 (27%)

Query: 144 SEPTVGKTHAKAGEPVTAYPAPMAAGSSSVPYAYPPPPQAGYGYPPPPPQGAAPNGAYPP 203
             P      A+      A    +   +     A  P PQA  G   P      P+     
Sbjct: 84  GPPPKDTGIARVPLAGAAGGPGIGRAAGRGIPAGVPMPQAPAGLAGPVRGVGGPSQQVMT 143

Query: 204 QQPGYGYPPPPPQQGYGYPPPPPQQGYGYPPPPPQQGYGYPPQQPGYGYPPVKPAKKSNG 263
            Q                   P Q   G   PPP  G G PP       P ++P      
Sbjct: 144 PQGRGTVAAAAAAATASIAGAPTQYPPGRGGPPPPMGRGAPPPGMMGPPPGMRPPMGPPM 203

Query: 264 GLGFGTGLLGGM 275
           G+  G G   GM
Sbjct: 204 GIPPGRGTPMGM 215

>3pgw_B SM B; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_A Length = 231

 Score = 43.5 bits (102), Expect = 3e-05
 Identities = 30/133 (22%), Positives = 34/133 (25%), Gaps = 3/133 (2%)

Query: 122 VTYQVRSSSGKPKGELHFSYKFSEPTVGKTHAKAGEPVTAYPAPMAAGSSSVPYAYPPPP 181
           V+  V     K  G        +    G   A         P P A    + P      P
Sbjct: 78  VSMTVEGPPPKDTGIARVPLAGAAGGPGIGRAAGRGIPAGVPMPQAPAGLAGPVRGVGGP 137

Query: 182 QAGYGYPPPPPQGAAPNGAYPPQQPGYGYPPPPPQQGYGYPPPPPQQGYGYPPPPPQQGY 241
                 P      AA   A      G     PP + G   P        G   PPP    
Sbjct: 138 SQQVMTPQGRGTVAAAAAAATASIAGAPTQYPPGRGGPPPPMGRGAPPPGMMGPPPGMR- 196

Query: 242 GYPPQQPGYGYPP 254
             PP  P  G PP
Sbjct: 197 --PPMGPPMGIPP 207

>3pgw_B SM B; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_A Length = 231

 Score = 43.1 bits (101), Expect = 4e-05
 Identities = 28/103 (27%), Positives = 32/103 (31%), Gaps = 3/103 (2%)

Query: 155 AGEPVTAYPAPMAA---GSSSVPYAYPPPPQAGYGYPPPPPQGAAPNGAYPPQQPGYGYP 211
           AG P+   PA +A    G          P   G          A+  GA     PG G P
Sbjct: 116 AGVPMPQAPAGLAGPVRGVGGPSQQVMTPQGRGTVAAAAAAATASIAGAPTQYPPGRGGP 175

Query: 212 PPPPQQGYGYPPPPPQQGYGYPPPPPQQGYGYPPQQPGYGYPP 254
           PPP  +G   P          PP  P  G       P    PP
Sbjct: 176 PPPMGRGAPPPGMMGPPPGMRPPMGPPMGIPPGRGTPMGMPPP 218

>3pgw_B SM B; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_A Length = 231

 Score = 42.3 bits (99), Expect = 6e-05
 Identities = 22/137 (16%), Positives = 27/137 (19%), Gaps = 3/137 (2%)

Query: 144 SEPTVGKTHAKAGEPVTAYPAPMAAGSSSVPYAYPPPPQA---GYGYPPPPPQGAAPNGA 200
           +          AG P     A     +       P        G G P          G 
Sbjct: 90  TGIARVPLAGAAGGPGIGRAAGRGIPAGVPMPQAPAGLAGPVRGVGGPSQQVMTPQGRGT 149

Query: 201 YPPQQPGYGYPPPPPQQGYGYPPPPPQQGYGYPPPPPQQGYGYPPQQPGYGYPPVKPAKK 260
                             Y      P    G   PPP      P  +P  G P   P  +
Sbjct: 150 VAAAAAAATASIAGAPTQYPPGRGGPPPPMGRGAPPPGMMGPPPGMRPPMGPPMGIPPGR 209

Query: 261 SNGGLGFGTGLLGGMLG 277
                    G+     G
Sbjct: 210 GTPMGMPPPGMRPPPPG 226

>2dmh_A Myoferlin; beta-sandwich, FER-1-like protein 3, muscular dystrophy, cardiomyopathy, membrane fusion, dystrophin, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 140

 Score = 43.9 bits (104), Expect = 6e-06
 Identities = 26/146 (17%), Positives = 49/146 (33%), Gaps = 17/146 (11%)

Query: 7   LDLNLISAKHLKDVHLISKMDVYAVVSISGDHTIKKQKVKSHVDRSGGSNPTWNFPIKFT 66
           L + + SA ++       K D    V        K +K K+    +   NP WN  ++F 
Sbjct: 9   LRVIVESASNIP-KTKFGKPDPIVSVIF------KDEKKKTKKVDNE-LNPVWNEILEFD 60

Query: 67  FNQSLAQQNRLTLDFKIK-SDGLLGDKTVGEVIVPIKELLDSSSSSSSGDAKSMKFVTYQ 125
                   +  +L   +K  + +  +K +G   V +K+L    S S      S+      
Sbjct: 61  LRGIPLDFSS-SLGIIVKDFETIGQNKLIGTATVALKDLTGDQSRSLPYKLISLL----- 114

Query: 126 VRSSSGKPKGELHFSYKFSEPTVGKT 151
                      +     + +P  G +
Sbjct: 115 -NEKGQDTGATIDLVIGY-DPPSGPS 138

>2cjs_A UNC-13 homolog A, MUNC13-1; neurotransmitter transport, zinc finger, synapto phorbol-ester binding; 1.78A {Rattus norvegicus} SCOP: b.7.1.1 Length = 167

 Score = 43.8 bits (103), Expect = 1e-05
 Identities = 21/74 (28%), Positives = 34/74 (45%), Gaps = 5/74 (6%)

Query: 39  TIKKQKVKSHVDRSGGSNPTWNFPIKFTFNQSLAQQNRLTLDFKIKSDGLLGDKTVGEVI 98
           T+K Q V+S      GS P+W     F  N+       L L  ++ + GL+ D  VG V 
Sbjct: 37  TLKVQNVESTTIAVRGSQPSWEQDFMFEINRL-----DLGLTVEVWNKGLIWDTMVGTVW 91

Query: 99  VPIKELLDSSSSSS 112
           +P++ +  S+    
Sbjct: 92  IPLRTIRQSNEEGP 105

>2fk9_A Protein kinase C, ETA type; ATP-binding, metal-binding, nucleotide-binding, diacylglycerol binding, serine/threonine-protein kinase, transferase; 1.75A {Homo sapiens} Length = 157

 Score = 43.0 bits (101), Expect = 2e-05
 Identities = 24/143 (16%), Positives = 52/143 (36%), Gaps = 34/143 (23%)

Query: 7   LDLNLISAKHLKDVHLISK----------MDVYAVVSISGDHTIKKQKVKSHVDRSGGSN 56
           L + +  A  L+      +          +D Y  VS+     + +   K        + 
Sbjct: 31  LRVRIGEAVGLQPTRWSLRHSLFKKGHQLLDPYLTVSV-DQVRVGQTSTKQK-----TNK 84

Query: 57  PTWNFPIKFTFNQSLAQQNRLTLDFKIKSDGLLG-DKTVGEVIVPIKELLDSSSSSSSGD 115
           PT+N   +F  N +    +   L+  +  +  LG D  V    +  +ELL ++ +S + +
Sbjct: 85  PTYNE--EFCANVT----DGGHLELAVFHETPLGYDHFVANCTLQFQELLRTTGASDTFE 138

Query: 116 AKSMKFVTYQVRSSSGKPKGELH 138
                     +     +P+G++ 
Sbjct: 139 ------GWVDL-----EPEGKVF 150

>1gmi_A Protein kinase C, epsilon type; PKC, C2 domain, X-RAY, phospholipids, PKC epsilon.; 1.7A {Rattus rattus} SCOP: b.7.1.1 Length = 136

 Score = 42.9 bits (101), Expect = 2e-05
 Identities = 21/120 (17%), Positives = 41/120 (34%), Gaps = 24/120 (20%)

Query: 7   LDLNLISAKHLKDVHLISK-----------MDVYAVVSISGDHTIKKQKVKSHVDRSGGS 55
           L + +  A  LK      +           +D Y  +++  D  I +   K        +
Sbjct: 8   LKIKICEAVSLKPTAWSLRDAVGPRPQTFLLDPYIALNV-DDSRIGQTATKQK-----TN 61

Query: 56  NPTWNFPIKFTFNQSLAQQNRLTLDFKIKSDGLLG-DKTVGEVIVPIKELLDSSSSSSSG 114
           +P W+   +F  +      N   ++  +  D  +G D  V    +  +ELL + S     
Sbjct: 62  SPAWHD--EFVTDVC----NGRKIELAVFHDAPIGYDDFVANCTIQFEELLQNGSRHFED 115

>1rsy_A Synaptotagmin I; calcium/phospholipid binding protein; 1.90A {Rattus norvegicus} SCOP: b.7.1.2 Length = 152

 Score = 42.4 bits (100), Expect = 3e-05
 Identities = 26/101 (25%), Positives = 42/101 (41%), Gaps = 7/101 (6%)

Query: 5   RALDLNLISAKHLKDVHLISKMDVYAVVSISGDHTIKKQKVKSHVDRSGGSNPTWNFPIK 64
             L + +I A  L  + +    D Y  V +  D   KK+K ++ V R    NP +N   +
Sbjct: 42  NQLLVGIIQAAELPALDMGGTSDPYVKVFLLPD---KKKKFETKVHR-KTLNPVFNE--Q 95

Query: 65  FTFNQSLAQQNRLTLDFKIKS-DGLLGDKTVGEVIVPIKEL 104
           FTF    ++    TL   +   D       +GE  VP+  +
Sbjct: 96  FTFKVPYSELGGKTLVMAVYDFDRFSKHDIIGEFKVPMNTV 136

>3dzy_A Retinoic acid receptor RXR-alpha; DNA-binding, HOST-virus interaction, metal-binding, nucleus, receptor, transcription, transcription regulation, zinc-FIN activator; HET: DNA REA BRL; 3.10A {Homo sapiens} PDB: 3dzu_A* 3e00_A* Length = 467

 Score = 43.6 bits (102), Expect = 5e-05
 Identities = 16/92 (17%), Positives = 20/92 (21%), Gaps = 4/92 (4%)

Query: 170 SSSVPYAYPPPPQAGYGYPPPPPQGAAPNGAYPPQQPGYGYPPPPPQQGYGYPPPP---P 226
           S+ V  +   P   G    P       P G   P Q                PP      
Sbjct: 17  STQVNSSLTSPTGRGSMAAPSLHPSLGP-GIGSPGQLHSPISTLSSPINGMGPPFSVISS 75

Query: 227 QQGYGYPPPPPQQGYGYPPQQPGYGYPPVKPA 258
             G      P     G+    P    P    +
Sbjct: 76  PMGPHSMSVPTTPTLGFSTGSPQLSSPMNPVS 107

>3dzy_A Retinoic acid receptor RXR-alpha; DNA-binding, HOST-virus interaction, metal-binding, nucleus, receptor, transcription, transcription regulation, zinc-FIN activator; HET: DNA REA BRL; 3.10A {Homo sapiens} PDB: 3dzu_A* 3e00_A* Length = 467

 Score = 43.6 bits (102), Expect = 5e-05
 Identities = 20/112 (17%), Positives = 28/112 (25%), Gaps = 9/112 (8%)

Query: 162 YPAPMAAGSSSVPYAYPPPP----QAGYGYPP-----PPPQGAAPNGAYPPQQPGYGYPP 212
             +P   GS + P  +P         G  + P      P  G  P  +      G     
Sbjct: 24  LTSPTGRGSMAAPSLHPSLGPGIGSPGQLHSPISTLSSPINGMGPPFSVISSPMGPHSMS 83

Query: 213 PPPQQGYGYPPPPPQQGYGYPPPPPQQGYGYPPQQPGYGYPPVKPAKKSNGG 264
            P     G+    PQ      P    +    P    G    P  P+      
Sbjct: 84  VPTTPTLGFSTGSPQLSSPMNPVSSSEDIKPPLGLNGVLKVPAHPSGNMASF 135

>3pyc_A E3 ubiquitin-protein ligase smurf1; phospholipid binding, membrane associate, lipid binding PROT; 1.96A {Homo sapiens} PDB: 2jqz_A Length = 132

 Score = 40.8 bits (96), Expect = 7e-05
 Identities = 20/143 (13%), Positives = 43/143 (30%), Gaps = 30/143 (20%)

Query: 7   LDLNLISAKHLKDVHLISKMDVYAVVSISGDHTIKKQKV--KSHVDRSGGSNPTWN--FP 62
           + L ++ AK+L         D +A + + G            +        +P WN  + 
Sbjct: 7   IRLTVLCAKNLAKKDFFRLPDPFAKIVVDGSGQCHSTDTVKNTL-------DPKWNQHYD 59

Query: 63  IKFTFNQSLAQQ----NRLTLDFKIKSDGLLGDKTVGEVIVPIKELLDSSSSSS-SGDAK 117
           +      S+        ++    K +  G L     G V +    +     +     D  
Sbjct: 60  LYVGKTDSITISVWNHKKI---HKKQGAGFL-----GCVRLLSNAISRLKDTGYQRLDLC 111

Query: 118 SMKFVTYQVRSSSGKPKGELHFS 140
            +        S +   +G++  S
Sbjct: 112 KLN------PSDTDAVRGQIVVS 128

>3oun_A Putative uncharacterized protein TB39.8; peptidoglycan, Ser/Thr kinase, pseudokinase, FHA domain, REG phosphorylation; HET: TPO; 2.71A {Mycobacterium tuberculosis} Length = 157

 Score = 41.4 bits (97), Expect = 7e-05
 Identities = 16/59 (27%), Positives = 17/59 (28%)

Query: 167 AAGSSSVPYAYPPPPQAGYGYPPPPPQGAAPNGAYPPQQPGYGYPPPPPQQGYGYPPPP 225
              S  VP     P   GY  P         +GA    QP  G      Q GYG     
Sbjct: 9   HHSSGLVPRGSHMPQGGGYAEPAGRDYDYGQSGAPDYGQPAPGGYSGYGQGGYGSAGTS 67

>3oun_A Putative uncharacterized protein TB39.8; peptidoglycan, Ser/Thr kinase, pseudokinase, FHA domain, REG phosphorylation; HET: TPO; 2.71A {Mycobacterium tuberculosis} Length = 157

 Score = 39.5 bits (92), Expect = 3e-04
 Identities = 15/67 (22%), Positives = 18/67 (26%), Gaps = 4/67 (5%)

Query: 183 AGYGYPPPPPQGAAPNGAYPPQQPGYGYPPPPPQQGYGYPPPPPQQGYGYPPPPPQQGYG 242
               +      G  P G++ PQ  GY  P                  YG P P    GYG
Sbjct: 2   GSSQHHHHHSSGLVPRGSHMPQGGGYAEPAGRDYD----YGQSGAPDYGQPAPGGYSGYG 57

Query: 243 YPPQQPG 249
                  
Sbjct: 58  QGGYGSA 64

>3h0g_A DNA-directed RNA polymerase II subunit RPB1; transcription, multi-protein complex, DNA- binding, magnesium; 3.65A {Schizosaccharomyces pombe} Length = 1752

 Score = 42.8 bits (100), Expect = 1e-04
 Identities = 20/99 (20%), Positives = 25/99 (25%), Gaps = 12/99 (12%)

Query: 164  APMAAGSSSVPYAYPPPPQAGYGYPPPPPQ-------GAAPNGAYPPQQPGYGYPPPPPQ 216
                   +  PY   P   +G+   P           G+     +          P    
Sbjct: 1475 TSQLPEGAGTPYERSPMVDSGFVGSPDAAAFSPLVQGGSEGREGFGDYGLLGAASPYKGV 1534

Query: 217  QGYGY-PPPPPQQGYGYPPPPPQQGYGYPPQQPGYGYPP 254
            Q  GY  P       GY    P     Y P  PGY   P
Sbjct: 1535 QSPGYTSPFSSAMSPGYGLTSP----SYSPSSPGYSTSP 1569

>3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A Length = 624

 Score = 41.1 bits (96), Expect = 4e-04
 Identities = 16/48 (33%), Positives = 17/48 (35%), Gaps = 10/48 (20%)

Query: 205 QPGYGYPPPPPQQGYGYPPPPPQQGYGYPPPPPQQGYGYPPQQPGYGY 252
           QP       P        PP    GYGY  P       Y   QPG+GY
Sbjct: 585 QPQLMLTAGPS----VAVPPQAPFGYGYTAP------AYGQPQPGFGY 622

>1cjy_A CPLA2, protein (cytosolic phospholipase A2); lipid-binding, hydrolase; HET: MES; 2.50A {Homo sapiens} SCOP: b.7.1.1 c.19.1.2 PDB: 1bci_A Length = 749

 Score = 40.3 bits (93), Expect = 6e-04
 Identities = 16/101 (15%), Positives = 36/101 (35%), Gaps = 13/101 (12%)

Query: 7   LDLNLISAKHLKDVH---LISKMDVYAVVSISGDHTIKKQKVKS-HVDRSGGSNPTWNFP 62
             + ++ A  +       ++   D Y  + IS   T    + ++ H +     NP WN  
Sbjct: 20  FTVVVLRATKVTKGAFGDMLDTPDPYVELFIS---TTPDSRKRTRHFNND--INPVWNET 74

Query: 63  IKFTFNQSLAQQNRLTLDFKIKSDGLLGDKTVGEVIVPIKE 103
            +F  + +        L+  +     + D+T+G     +  
Sbjct: 75  FEFILDPNQEN----VLEITLMDANYVMDETLGTATFTVSS 111

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	305
1wfj_A	136	Putative elicitor-responsive gene; C2 domain, rike	99.89
2dmh_A	140	Myoferlin; beta-sandwich, FER-1-like protein 3, mu	99.88
3b7y_A	153	E3 ubiquitin-protein ligase NEDD4; C2 domain, UBL-	99.88
3m7f_B	176	E3 ubiquitin-protein ligase NEDD4; C2 domain, GRB1	99.87
2ep6_A	133	MCTP2 protein; beta sandwich, Ca2+ binding, membra	99.86
2fk9_A	157	Protein kinase C, ETA type; ATP-binding, metal-bin	99.85
3kwu_A	148	MUNC13-1; calcium binding protein, phospholipid bi	99.85
1gmi_A	136	Protein kinase C, epsilon type; PKC, C2 domain, X-	99.84
3pyc_A	132	E3 ubiquitin-protein ligase smurf1; phospholipid b	99.84
1rlw_A	126	Phospholipase A2, CALB domain; hydrolase, C2 domai	99.84
2nq3_A	173	Itchy homolog E3 ubiquitin protein ligase; C2 doma	99.83
2cjt_A	131	UNC-13 homolog A, MUNC13-1; phorbol-ester binding,	99.81
2b3r_A	134	Phosphatidylinositol-4-phosphate 3-kinase C2 DOMA	99.79
1a25_A	149	CALB, protein kinase C (beta); calcium++/phospholi	99.79
3f04_A	143	Synaptotagmin-1; C2A, calcium, cell junction, cyto	99.79
1rsy_A	152	Synaptotagmin I; calcium/phospholipid binding prot	99.79
2z0u_A	155	WW domain-containing protein 1; C2 domain, alterna	99.79
2d8k_A	141	Synaptotagmin VII; exocytosis, calcium binding, ly	99.79
1v27_A	141	Regulating synaptic membrane exocytosis protein 2;	99.78
3rdl_A	137	Protein kinase C alpha type; protein kinase PKC, t	99.78
3fbk_A	153	RGS3, RGP3, regulator of G-protein signaling 3; al	99.78
3fdw_A	148	Synaptotagmin-like protein 4; structural genomics,	99.78
1ugk_A	138	Synaptotagmin IV, KIAA1342; beta sandwich, structu	99.78
2dmg_A	142	KIAA1228 protein; beta-sandwich, structural genomi	99.77
2bwq_A	129	Regulating synaptic membrane exocytosis protein 2;	99.77
2chd_A	142	Rabphilin-3A, exophilin-1; C2 domain, C2A, calcium	99.77
2r83_A	284	Synaptotagmin-1; C2A-C2B, exocytosis, calcium, cel	99.77
2cjs_A	167	UNC-13 homolog A, MUNC13-1; neurotransmitter trans	99.76
2enp_A	147	B/K protein; C2 type 1,beta sandwich, structural g	99.76
1rh8_A	142	Piccolo protein; beta-sandwich, metal binding prot	99.75
2q3x_A	171	Regulating synaptic membrane exocytosis protein 1;	99.75
1wfm_A	138	Synaptotagmin XIII; C2 domain, exocytosis, neurotr	99.75
3n5a_A	138	Synaptotagmin-7; calcium/phospholipid binding prot	99.74
2cm5_A	166	Rabphilin-3A; protein transport, zinc-finger, Ca2+	99.74
1tjx_A	159	Similar to synaptotagmini/P65; C2B domain, calcium	99.74
1w15_A	153	Synaptotagmin IV; metal binding protein, endocytos	99.73
3l9b_A	144	Otoferlin; C2-domain, beta-sheets, cell membrane,	99.71
1dqv_A	296	Synaptotagmin III; beta sandwich, calcium ION, C2	99.7
1djx_A	624	PLC-D1, phosphoinositide-specific phospholipase C,	99.68
3jzy_A	510	Intersectin 2; C2 domain, structural genomics cons	99.67
3nsj_A	540	Perforin-1; pore forming protein, immune system; H	99.65
2r83_A	284	Synaptotagmin-1; C2A-C2B, exocytosis, calcium, cel	99.58
1cjy_A	749	CPLA2, protein (cytosolic phospholipase A2); lipid	99.53
1dqv_A	296	Synaptotagmin III; beta sandwich, calcium ION, C2	99.51
3ohm_B	885	1-phosphatidylinositol-4,5-bisphosphate phosphodi	99.5
2zkm_X	799	1-phosphatidylinositol-4,5-bisphosphate phosphodie	99.49
3bxj_A	483	RAS GTPase-activating protein syngap; GTPase activ	99.49
3qr0_A	816	Phospholipase C-beta (PLC-beta); PH domain, EF han	99.47
3pfq_A	674	PKC-B, PKC-beta, protein kinase C beta type; phosp	99.41
1yrk_A	126	NPKC-delta, protein kinase C, delta type; C2 domai	99.07
2enj_A	138	NPKC-theta, protein kinase C theta type; beta-sand	99.03
2yrb_A	156	Protein fantom; beta sandwich, NPPSFA, national pr	97.04
3l4c_A	220	Dedicator of cytokinesis protein 1; DOCK180, DOCK1	96.43
1dx0_A	219	Prion protein; brain, repeat; NMR {Bos taurus} SCO	95.88
1dx0_A	219	Prion protein; brain, repeat; NMR {Bos taurus} SCO	95.84
3hhm_A	1091	Phosphatidylinositol-4,5-bisphosphate 3-kinase cat	94.3
2wxf_A	940	Phosphatidylinositol-4,5-bisphosphate 3-kinase Ca	94.28
2y3a_A	1092	Phosphatidylinositol-4,5-bisphosphate 3-kinase Ca	89.67
1e7u_A	961	Phosphatidylinositol 3-kinase catalytic subunit; p	88.92
2qzq_A	152	Axin interactor, dorsalization associated protein;	86.0

>1wfj_A Putative elicitor-responsive gene; C2 domain, riken structural genomics/proteomics initiative, RSGI, structural genomics, plant protein; NMR {Arabidopsis thaliana} SCOP: b.7.1.2

Probab=99.89  E-value=1.1e-22  Score=164.89  Aligned_cols=125  Identities=28%  Similarity=0.443  Sum_probs=107.4

Q ss_pred             ccceEEEEEEEecCCCCCCCCCCCCcEEEEEEecCCCCCCceEEeEecCCCCCCCeeeceEEEEeccchhccCceEEEEE
Q 021949            3 SYRALDLNLISAKHLKDVHLISKMDVYAVVSISGDHTIKKQKVKSHVDRSGGSNPTWNFPIKFTFNQSLAQQNRLTLDFK   82 (305)
Q Consensus         3 ~~~~L~V~vvsA~dL~~~~~~gk~dpYv~v~l~~~~~~~~~~~kT~v~k~~~~nP~Wne~f~f~v~~~~~~~~~~~L~v~   82 (305)
                      ..++|+|+|++|++|+..+.++++||||+|++.+      .+++|+++++++.||+|||+|.|.+...     ...|+|+
T Consensus         8 ~~~~L~v~v~~a~~L~~~d~~g~~dpyv~v~~~~------~~~kT~~~~~~~~nP~Wne~f~f~v~~~-----~~~l~~~   76 (136)
T 1wfj_A            8 PHGTLEVVLVSAKGLEDADFLNNMDPYVQLTCRT------QDQKSNVAEGMGTTPEWNETFIFTVSEG-----TTELKAK   76 (136)
T ss_dssp             CEEEEEEEEEEEEECSSCCSSCSSCCCEEEESSS------CEEECCCCTTCCSSCEEEEEEEEEEESS-----CCEEEEE
T ss_pred             CcEEEEEEEEeccCCCCcccCCCcCceEEEEECC------ccceeEeccCCCCCCccCcEEEEEECCC-----CCEEEEE
Confidence            5688999999999999999889999999999976      4789999984589999999999999762     2589999


Q ss_pred             EEecCCC-CCcceeEEEEeCcccccccCCCCCCCCCcceEEEEEeecCCCCCccEEEEEEEEeccCC
Q 021949           83 IKSDGLL-GDKTVGEVIVPIKELLDSSSSSSSGDAKSMKFVTYQVRSSSGKPKGELHFSYKFSEPTV  148 (305)
Q Consensus        83 V~d~~~~-~d~~IG~~~vpL~~l~~~~~~~~~~~g~~~~~~~~~l~~~~g~~~G~l~lsl~~~~~~~  148 (305)
                      |||++.+ +|++||++.|+|.++....         +....||.|. ++++..|+|+|+|+|.+...
T Consensus        77 V~d~~~~~~d~~lG~~~i~l~~l~~~~---------~~~~~w~~L~-~~~~~~G~i~l~l~~~p~~~  133 (136)
T 1wfj_A           77 IFDKDVGTEDDAVGEATIPLEPVFVEG---------SIPPTAYNVV-KDEEYKGEIWVALSFKPSGP  133 (136)
T ss_dssp             ECCSSSCTTTCCSEEEEEESHHHHHHS---------EEEEEEEEEE-ETTEEEEEEEEEEEEEECCS
T ss_pred             EEECCCCCCCceEEEEEEEHHHhccCC---------CCCcEEEEee-cCCccCEEEEEEEEEEeCCC
Confidence            9999988 7999999999999996433         2356789988 56778999999999998743

>2dmh_A Myoferlin; beta-sandwich, FER-1-like protein 3, muscular dystrophy, cardiomyopathy, membrane fusion, dystrophin, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.88  E-value=1.2e-21  Score=159.67  Aligned_cols=127  Identities=19%  Similarity=0.300  Sum_probs=104.5

Q ss_pred             CccceEEEEEEEecCCCCCCCCCCCCcEEEEEEecCCCCCCceEEeEecCCCCCCCeeeceEEEEeccchhccCceEEEE
Q 021949            2 ASYRALDLNLISAKHLKDVHLISKMDVYAVVSISGDHTIKKQKVKSHVDRSGGSNPTWNFPIKFTFNQSLAQQNRLTLDF   81 (305)
Q Consensus         2 ~~~~~L~V~vvsA~dL~~~~~~gk~dpYv~v~l~~~~~~~~~~~kT~v~k~~~~nP~Wne~f~f~v~~~~~~~~~~~L~v   81 (305)
                      +..++|+|+|++|++|...+. +++||||++++.+      .++||+++++ +.||+|||+|.|.+...... ....|+|
T Consensus         4 ~~~g~L~v~v~~a~~L~~~~~-g~~dpyv~v~~~~------~~~kT~v~~~-t~nP~wne~f~f~v~~~~~~-~~~~l~i   74 (140)
T 2dmh_A            4 GSSGMLRVIVESASNIPKTKF-GKPDPIVSVIFKD------EKKKTKKVDN-ELNPVWNEILEFDLRGIPLD-FSSSLGI   74 (140)
T ss_dssp             CBCCEEEEEEEEEESCCCCSS-SCCCEEEEEECSS------CEEECCCCCS-CSSCEEEEEEEEECSSCCCC-TTCEEEE
T ss_pred             CCCcEEEEEEEEeeCCCCCCC-CCCCeEEEEEECC------EeEEeeeecC-CCCCccCcEEEEEecccccC-CCCEEEE
Confidence            356899999999999999888 9999999999986      5799999887 79999999999999754321 2368999


Q ss_pred             EEEecCCC-CCcceeEEEEeCcccccccCCCCCCCCCcceEEEEE---eecCCC-CCccEEEEEEEEeccC
Q 021949           82 KIKSDGLL-GDKTVGEVIVPIKELLDSSSSSSSGDAKSMKFVTYQ---VRSSSG-KPKGELHFSYKFSEPT  147 (305)
Q Consensus        82 ~V~d~~~~-~d~~IG~~~vpL~~l~~~~~~~~~~~g~~~~~~~~~---l~~~~g-~~~G~l~lsl~~~~~~  147 (305)
                      +|||++.+ .|++||++.|+|.+|....          ....|+.   |.+.++ +.+|+|+|+|+|.+..
T Consensus        75 ~V~d~d~~~~~~~lG~~~i~l~~l~~~~----------~~~~w~~l~~l~~~~~~~~~G~l~l~~~~~p~~  135 (140)
T 2dmh_A           75 IVKDFETIGQNKLIGTATVALKDLTGDQ----------SRSLPYKLISLLNEKGQDTGATIDLVIGYDPPS  135 (140)
T ss_dssp             EEEETTCSSSCCCCEEEEEEGGGTCSSS----------CEEEEEEEEEEECTTCCEEEEEEEEEEEECCCB
T ss_pred             EEEECCCCCCCceEEEEEEEHHHhccCC----------CceeEEeeeeccCCCCCCCCCEEEEEEEEECCC
Confidence            99999988 7899999999999997533          2355665   666444 4679999999998854

>3b7y_A E3 ubiquitin-protein ligase NEDD4; C2 domain, UBL-conjugation pathway, structural genomics consortium, SGC, cytoplasm; 1.80A {Homo sapiens} PDB: 2nsq_A

Probab=99.88  E-value=8.6e-22  Score=162.92  Aligned_cols=133  Identities=20%  Similarity=0.314  Sum_probs=100.4

Q ss_pred             ccceEEEEEEEecCCCCCCCCCCCCcEEEEEEecCCCCCCceEEeEecCCCCCCCeeeceEEEEeccchhccCceEEEEE
Q 021949            3 SYRALDLNLISAKHLKDVHLISKMDVYAVVSISGDHTIKKQKVKSHVDRSGGSNPTWNFPIKFTFNQSLAQQNRLTLDFK   82 (305)
Q Consensus         3 ~~~~L~V~vvsA~dL~~~~~~gk~dpYv~v~l~~~~~~~~~~~kT~v~k~~~~nP~Wne~f~f~v~~~~~~~~~~~L~v~   82 (305)
                      ..+.|+|+|++|++|+..+.++++||||++++......+..+++|+++++ +.||+|||+|.|.+....     ..|+|+
T Consensus        18 ~~~~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~~~~kT~v~~~-t~nP~wne~f~f~v~~~~-----~~l~~~   91 (153)
T 3b7y_A           18 NSRIVRVRVIAGIGLAKKDILGASDPYVRVTLYDPMNGVLTSVQTKTIKK-SLNPKWNEEILFRVHPQQ-----HRLLFE   91 (153)
T ss_dssp             TCEEEEEEEEEEESCC-------CCEEEEEEEEETTTEEEEEEECCCCSS-CSSCCCCEEEEEEECTTT-----CEEEEE
T ss_pred             CccEEEEEEEEeeCCCCCCCCCCCCcEEEEEEECCCCccceeeeCccccC-CCCCCCCCEEEEEecCCC-----CEEEEE
Confidence            45789999999999999888899999999999853321236889999988 899999999999997542     589999


Q ss_pred             EEecCCC-CCcceeEEEEeCcccccccCCCCCCCCCcceEEEEEeecC--CCCCccEEEEEEEEec
Q 021949           83 IKSDGLL-GDKTVGEVIVPIKELLDSSSSSSSGDAKSMKFVTYQVRSS--SGKPKGELHFSYKFSE  145 (305)
Q Consensus        83 V~d~~~~-~d~~IG~~~vpL~~l~~~~~~~~~~~g~~~~~~~~~l~~~--~g~~~G~l~lsl~~~~  145 (305)
                      |||++.+ +|++||++.|+|.+|....    ......+...||.|...  ..+.+|+|+|+++|.+
T Consensus        92 V~d~d~~~~d~~iG~~~i~l~~l~~~~----~~~~~~~~~~w~~L~~~~~~~~~~G~i~l~l~~~P  153 (153)
T 3b7y_A           92 VFDENRLTRDDFLGQVDVPLYPLPTEN----PRLERPYTFKDFVLHPRSHKSRVKGYLRLKMTYLP  153 (153)
T ss_dssp             EEECCSSSCCEEEEEEEEECCSCCBCC----TTSCCCCCCEEEECBCSSTTCCCCSEEEEEEEECC
T ss_pred             EEECCCCcCCCeeEEEEEEHHHcccCC----CcccccccccccccccccCCCCcceEEEEEEEEeC
Confidence            9999988 7999999999999998643    11101233578888753  3467899999999964

>3m7f_B E3 ubiquitin-protein ligase NEDD4; C2 domain, GRB10, SH2 domain, phosphoprotein, conjugation pathway, signaling protein-ligase complex; 2.00A {Mus musculus}

Probab=99.87  E-value=1.3e-21  Score=165.89  Aligned_cols=134  Identities=19%  Similarity=0.302  Sum_probs=101.5

Q ss_pred             ccceEEEEEEEecCCCCCCCCCCCCcEEEEEEecCCCCCCceEEeEecCCCCCCCeeeceEEEEeccchhccCceEEEEE
Q 021949            3 SYRALDLNLISAKHLKDVHLISKMDVYAVVSISGDHTIKKQKVKSHVDRSGGSNPTWNFPIKFTFNQSLAQQNRLTLDFK   82 (305)
Q Consensus         3 ~~~~L~V~vvsA~dL~~~~~~gk~dpYv~v~l~~~~~~~~~~~kT~v~k~~~~nP~Wne~f~f~v~~~~~~~~~~~L~v~   82 (305)
                      +.++|+|+|++|++|+..+.++++||||+|++.........+++|+++++ +.||+|||+|.|.+....     ..|+|+
T Consensus         6 ~~g~L~V~v~~a~~L~~~d~~g~~DPyv~v~l~~~~~~~~~~~kT~v~~~-t~nP~Wne~f~f~v~~~~-----~~L~~~   79 (176)
T 3m7f_B            6 DTRVVRVKVIAGIGLAKKDILGASDPYVRVTLYDPMSGILTSVQTKTIKK-SLNPKWNEEILFRVLPQR-----HRILFE   79 (176)
T ss_dssp             TCEEEEEEEEEEESCC---CCCCCCEEEEEEEEETTTEEEEEEECCCCSS-CSSCEEEEEEEEEECTTT-----CEEEEE
T ss_pred             CcEEEEEEEEEeeCCCCcCCCCCcCcEEEEEEECCCCCcccceeCceECC-CCCCcccceEEEEEcCCC-----CEEEEE
Confidence            56899999999999999998899999999999864322225789999987 899999999999997542     589999


Q ss_pred             EEecCCC-CCcceeEEEEeCcccccccCCCCCCCCCcceEEEEEeec--CCCCCccEEEEEEEEecc
Q 021949           83 IKSDGLL-GDKTVGEVIVPIKELLDSSSSSSSGDAKSMKFVTYQVRS--SSGKPKGELHFSYKFSEP  146 (305)
Q Consensus        83 V~d~~~~-~d~~IG~~~vpL~~l~~~~~~~~~~~g~~~~~~~~~l~~--~~g~~~G~l~lsl~~~~~  146 (305)
                      |||++.+ .|+|||++.|+|.+|....    ......+...||.|..  ..++.+|+|+|+|+|.+.
T Consensus        80 V~d~d~~~~d~~lG~~~i~l~~l~~~~----~~~~~~~~~~w~~L~~~~~~~~~~G~l~l~l~~~p~  142 (176)
T 3m7f_B           80 VFDENRLTRDDFLGQVDVPLYPLPTEN----PRMERPYTFKDFVLHPRSHKSRVKGYLRLKMTYLPK  142 (176)
T ss_dssp             EEECC----CEEEEEEEEESCSCCBC----------CCCCEEEECBCSSTTCCCCSEEEEEEEECC-
T ss_pred             EEECCCCCCCcEEEEEEEEHHHccccC----CcccccccccEEEccccCCCCccCEEEEEEEEEEeC
Confidence            9999988 7899999999999998643    1100012236888875  345678999999999987

>2ep6_A MCTP2 protein; beta sandwich, Ca2+ binding, membrane binding, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.7.1.1

Probab=99.86  E-value=1.3e-21  Score=158.23  Aligned_cols=119  Identities=16%  Similarity=0.304  Sum_probs=102.3

Q ss_pred             CccceEEEEEEEecCCCCCCCCCCCCcEEEEEEecCCCCCCceEEeEecCCCCCCCeeeceEEEEeccchhccCceEEEE
Q 021949            2 ASYRALDLNLISAKHLKDVHLISKMDVYAVVSISGDHTIKKQKVKSHVDRSGGSNPTWNFPIKFTFNQSLAQQNRLTLDF   81 (305)
Q Consensus         2 ~~~~~L~V~vvsA~dL~~~~~~gk~dpYv~v~l~~~~~~~~~~~kT~v~k~~~~nP~Wne~f~f~v~~~~~~~~~~~L~v   81 (305)
                      ...++|+|+|++|++|+..+.++++||||++++.+      .+++|+++++ +.||+|||+|.|.+....     ..|+|
T Consensus        10 ~~~~~L~v~v~~a~~L~~~d~~g~~dpyv~v~~~~------~~~kT~~~~~-t~nP~wne~f~f~~~~~~-----~~l~i   77 (133)
T 2ep6_A           10 KDVGILQVKVLKAADLLAADFSGKSDPFCLLELGN------DRLQTHTVYK-NLNPEWNKVFTFPIKDIH-----DVLEV   77 (133)
T ss_dssp             CCSEEEEEEEEEEESCCCSSSSSCCCEEEEEEETT------EEEECCCCSS-CSSCCCCEEEEEEESCTT-----CEEEE
T ss_pred             CCceEEEEEEEeeECCCCCCCCCCcCeEEEEEECC------EEEEeeeecC-CCCCccccEEEEEecCCC-----CEEEE
Confidence            35689999999999999999889999999999976      5789999988 899999999999997532     58999


Q ss_pred             EEEecCCC-CCcceeEEEEeCcccccccCCCCCCCCCcceEEEEEeecCC--CCCccEEEEEEEEe
Q 021949           82 KIKSDGLL-GDKTVGEVIVPIKELLDSSSSSSSGDAKSMKFVTYQVRSSS--GKPKGELHFSYKFS  144 (305)
Q Consensus        82 ~V~d~~~~-~d~~IG~~~vpL~~l~~~~~~~~~~~g~~~~~~~~~l~~~~--g~~~G~l~lsl~~~  144 (305)
                      +|||++.+ +|++||++.|+|.++.. .           ...||.|...+  ++.+|+|+|+++|.
T Consensus        78 ~V~d~d~~~~~~~lG~~~i~l~~l~~-~-----------~~~w~~L~~~~~~~~~~G~i~l~i~~~  131 (133)
T 2ep6_A           78 TVFDEDGDKPPDFLGKVAIPLLSIRD-G-----------QPNCYVLKNKDLEQAFKGVIYLEMDLI  131 (133)
T ss_dssp             EEEEEETTEEEEECCBCEEEGGGCCS-S-----------CCEECCCBCSCTTSCCSSEEEEEEEEE
T ss_pred             EEEECCCCCCCCeeEEEEEEHHHccC-C-----------CceEEEeecCCCCCccceEEEEEEEEE
Confidence            99999988 78999999999999863 2           13688887643  46889999999985

>2fk9_A Protein kinase C, ETA type; ATP-binding, metal-binding, nucleotide-binding, diacylglycerol binding, serine/threonine-protein kinase, transferase; 1.75A {Homo sapiens}

Probab=99.85  E-value=4e-21  Score=160.38  Aligned_cols=119  Identities=15%  Similarity=0.167  Sum_probs=97.1

Q ss_pred             ccceEEEEEEEecCCCCCCC----------CCCCCcEEEEEEecCCCCCCceEEeEecCCCCCCCeeeceEEEEeccchh
Q 021949            3 SYRALDLNLISAKHLKDVHL----------ISKMDVYAVVSISGDHTIKKQKVKSHVDRSGGSNPTWNFPIKFTFNQSLA   72 (305)
Q Consensus         3 ~~~~L~V~vvsA~dL~~~~~----------~gk~dpYv~v~l~~~~~~~~~~~kT~v~k~~~~nP~Wne~f~f~v~~~~~   72 (305)
                      ..+.|+|+|++|++|+..+.          .+.+||||+|++++     .++.||+++++ +.||+|||+|.|.+...  
T Consensus        27 ~~g~L~V~VieA~~L~~~D~~~~~~~f~~~~g~sDPYv~v~l~~-----~~~~kT~v~~k-tlnP~WNE~F~f~v~~~--   98 (157)
T 2fk9_A           27 FNGYLRVRIGEAVGLQPTRWSLRHSLFKKGHQLLDPYLTVSVDQ-----VRVGQTSTKQK-TNKPTYNEEFCANVTDG--   98 (157)
T ss_dssp             EEEEEEEEEEEEECCCCCHHHHHTTTSSSSCCCCCEEEEEEETT-----EEEEECCCCSS-CSSCEEEEEEEEEEEEE--
T ss_pred             CccEEEEEEEEEECCCCccccccccccccCCCCCCeEEEEEECC-----EeeEEeeecCC-CCCCccCcEEEEEcCCC--
Confidence            46899999999999997762          25689999999975     24579999877 89999999999998642  


Q ss_pred             ccCceEEEEEEEecCCC-CCcceeEEEEeCcccccccCCCCCCCCCcceEEEEEeecCCCCCccEEEEEEEEe
Q 021949           73 QQNRLTLDFKIKSDGLL-GDKTVGEVIVPIKELLDSSSSSSSGDAKSMKFVTYQVRSSSGKPKGELHFSYKFS  144 (305)
Q Consensus        73 ~~~~~~L~v~V~d~~~~-~d~~IG~~~vpL~~l~~~~~~~~~~~g~~~~~~~~~l~~~~g~~~G~l~lsl~~~  144 (305)
                          ..|.|+|||++.+ .|++||++.|+|.+|....    . + ......||.|..     +|+|+|+++|.
T Consensus        99 ----~~L~~~V~D~d~~~~dd~iG~~~i~l~~l~~~~----~-~-~~~~~~W~~L~~-----~G~i~l~l~~~  156 (157)
T 2fk9_A           99 ----GHLELAVFHETPLGYDHFVANCTLQFQELLRTT----G-A-SDTFEGWVDLEP-----EGKVFVVITLT  156 (157)
T ss_dssp             ----CEEEEEEEECCSSSSCEEEEEEEEEHHHHHHHH----T-T-CSEEEEEEECBS-----SCEEEEEEEEC
T ss_pred             ----CEEEEEEEECCCCCCCCEEEEEEEEHHHhhccc----C-C-CCcccEEEECCC-----CcEEEEEEEEE
Confidence                4899999999988 6899999999999998641    0 0 013578999853     89999999984

>3kwu_A MUNC13-1; calcium binding protein, phospholipid binding protein, metal binding protein; HET: GOL; 1.37A {Rattus norvegicus} SCOP: b.7.1.0 PDB: 3kwt_A*

Probab=99.85  E-value=4.1e-20  Score=151.93  Aligned_cols=119  Identities=15%  Similarity=0.262  Sum_probs=100.8

Q ss_pred             ccceEEEEEEEecCCCCCCCCCCCCcEEEEEEecCCCCCCceEEeEecCCCCCCCeeeceEEEEeccchhccCceEEEEE
Q 021949            3 SYRALDLNLISAKHLKDVHLISKMDVYAVVSISGDHTIKKQKVKSHVDRSGGSNPTWNFPIKFTFNQSLAQQNRLTLDFK   82 (305)
Q Consensus         3 ~~~~L~V~vvsA~dL~~~~~~gk~dpYv~v~l~~~~~~~~~~~kT~v~k~~~~nP~Wne~f~f~v~~~~~~~~~~~L~v~   82 (305)
                      ..+.|+|+|++|++|...+.++++||||++++..      .+++|+++++ +.||.|||+|.|.+....     ..|.|+
T Consensus        15 ~~~~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~------~~~kT~~~~~-t~nP~Wne~f~f~v~~~~-----~~l~~~   82 (148)
T 3kwu_A           15 WSAKISITVVCAQGLQAKDKTGSSDPYVTVQVGK------TKKRTKTIYG-NLNPVWEENFHFECHNSS-----DRIKVR   82 (148)
T ss_dssp             CCEEEEEEEEEEESCCCCSTTSCCCEEEEEEETT------EEEECCCCCS-CSSCEEEEEEEEEECSTT-----CEEEEE
T ss_pred             cccEEEEEEEeeeCCCCCCCCCCcCeEEEEEECC------EEEECCccCC-CCCCCcccEEEEEecCCC-----CEEEEE
Confidence            3578999999999999998889999999999954      6889999987 799999999999997543     489999


Q ss_pred             EEecCCC------------CCcceeEEEEeCcccccccCCCCCCCCCcceEEEEEeecC--CCCCccEEEEEEEEec
Q 021949           83 IKSDGLL------------GDKTVGEVIVPIKELLDSSSSSSSGDAKSMKFVTYQVRSS--SGKPKGELHFSYKFSE  145 (305)
Q Consensus        83 V~d~~~~------------~d~~IG~~~vpL~~l~~~~~~~~~~~g~~~~~~~~~l~~~--~g~~~G~l~lsl~~~~  145 (305)
                      |||++.+            .|++||++.|+|.++.. .           ...||.|...  ..+.+|+|+|+|+|.-
T Consensus        83 v~d~d~~~~~~~~~~~~~~~~~~lG~~~i~l~~l~~-~-----------~~~w~~L~~~~~~~~~~G~i~l~l~~e~  147 (148)
T 3kwu_A           83 VLDEDDDIKSRVKQRFKRESDDFLGQTIIEVRTLSG-E-----------MDVWYNLDKRTDKSAVSGAIRLHISVEI  147 (148)
T ss_dssp             EEECCCSHHHHHHTTTSSCSSEEEEEEEEEGGGCCS-E-----------EEEEEECBCSSTTCCCCCEEEEEEEEEC
T ss_pred             EEECCCCccccccccccCCCCccEEEEEEEHHHCcC-C-----------CCEEEEcccCCCCCCCceEEEEEEEEEe
Confidence            9999873            78999999999999842 2           3678888753  3457899999999863

>1gmi_A Protein kinase C, epsilon type; PKC, C2 domain, X-RAY, phospholipids, PKC epsilon.; 1.7A {Rattus rattus} SCOP: b.7.1.1

Probab=99.84  E-value=9.7e-21  Score=153.81  Aligned_cols=119  Identities=15%  Similarity=0.235  Sum_probs=97.6

Q ss_pred             ccceEEEEEEEecCCCCCCCCCC-----------CCcEEEEEEecCCCCCCceEEeEecCCCCCCCeeeceEEEEeccch
Q 021949            3 SYRALDLNLISAKHLKDVHLISK-----------MDVYAVVSISGDHTIKKQKVKSHVDRSGGSNPTWNFPIKFTFNQSL   71 (305)
Q Consensus         3 ~~~~L~V~vvsA~dL~~~~~~gk-----------~dpYv~v~l~~~~~~~~~~~kT~v~k~~~~nP~Wne~f~f~v~~~~   71 (305)
                      ..+.|+|+|++|++|+..+.+++           +||||++++..     ....+|++.++ +.||+|||+|.|.+... 
T Consensus         4 ~~g~L~v~v~~a~~L~~~d~~~~~~~g~~~~~~~~DPyv~v~l~~-----~~~~~T~~~~~-t~nP~WnE~f~f~v~~~-   76 (136)
T 1gmi_A            4 FNGLLKIKICEAVSLKPTAWSLRDAVGPRPQTFLLDPYIALNVDD-----SRIGQTATKQK-TNSPAWHDEFVTDVCNG-   76 (136)
T ss_dssp             EEEEEEEEEEEEESCCCCHHHHCC-CCSSCCCCCCCEEEEEEETT-----EEEEECCCCSS-CSSCEEEEEEEEEEEEE-
T ss_pred             cceEEEEEEEeCcCCCCcccccccccccccCCcCcCcEEEEEECC-----eEeeeeeEECC-CcCCccCCEEEEEecCC-
Confidence            46899999999999998775544           99999999965     24578888777 89999999999998653 


Q ss_pred             hccCceEEEEEEEecCCC-CCcceeEEEEeCcccccccCCCCCCCCCcceEEEEEeecCCCCCccEEEEEEEEecc
Q 021949           72 AQQNRLTLDFKIKSDGLL-GDKTVGEVIVPIKELLDSSSSSSSGDAKSMKFVTYQVRSSSGKPKGELHFSYKFSEP  146 (305)
Q Consensus        72 ~~~~~~~L~v~V~d~~~~-~d~~IG~~~vpL~~l~~~~~~~~~~~g~~~~~~~~~l~~~~g~~~G~l~lsl~~~~~  146 (305)
                           ..|+|+|||++.+ +|++||++.|+|.++....    .    .....|+.|.     ++|+|+|+++|...
T Consensus        77 -----~~L~~~V~d~d~~~~dd~iG~~~i~l~~l~~~~----~----~~~~~w~~L~-----~~G~i~l~l~~~~~  134 (136)
T 1gmi_A           77 -----RKIELAVFHDAPIGYDDFVANCTIQFEELLQNG----S----RHFEDWIDLE-----PEGKVYVIIDLSGS  134 (136)
T ss_dssp             -----CEEEEEEEECCSSSSCEEEEEEEEEHHHHTSTT----C----SEEEEEEECB-----SSCEEEEEEEEEEE
T ss_pred             -----CEEEEEEEeCCCCCCCCEEEEEEEEHHHhcccC----C----CCccEEEEcC-----CCeEEEEEEEEEec
Confidence                 4899999999988 7899999999999998533    1    1236688775     47999999999753

>3pyc_A E3 ubiquitin-protein ligase smurf1; phospholipid binding, membrane associate, lipid binding PROT; 1.96A {Homo sapiens} PDB: 2jqz_A

Probab=99.84  E-value=2.5e-20  Score=150.38  Aligned_cols=122  Identities=12%  Similarity=0.224  Sum_probs=98.6

Q ss_pred             ccceEEEEEEEecCCCCCCCCCCCCcEEEEEEecCCCCCCceEEeEecCCCCCCCeeeceEEEEeccchhccCceEEEEE
Q 021949            3 SYRALDLNLISAKHLKDVHLISKMDVYAVVSISGDHTIKKQKVKSHVDRSGGSNPTWNFPIKFTFNQSLAQQNRLTLDFK   82 (305)
Q Consensus         3 ~~~~L~V~vvsA~dL~~~~~~gk~dpYv~v~l~~~~~~~~~~~kT~v~k~~~~nP~Wne~f~f~v~~~~~~~~~~~L~v~   82 (305)
                      +..+|+|+|++|++|+..+.++++||||++++...    ..+++|+++++ +.||+|||+|.|.+....      .|.|+
T Consensus         3 ~~~~L~V~v~~a~~L~~~d~~g~sDpyv~v~~~~~----~~~~kT~v~~~-t~nP~wne~f~f~v~~~~------~l~~~   71 (132)
T 3pyc_A            3 EFIKIRLTVLCAKNLAKKDFFRLPDPFAKIVVDGS----GQCHSTDTVKN-TLDPKWNQHYDLYVGKTD------SITIS   71 (132)
T ss_dssp             SEEEEEEEEEEEESCCCCSTTCCCCEEEEEEETTT----CCEEECCCCSS-CSSCEEEEEEEEEEETTC------CEEEE
T ss_pred             CeEEEEEEEEEeECCCCCCCCCCcCeEEEEEECCC----CceEECCccCC-CCCCCccCEEEEEeCCCC------EEEEE
Confidence            56789999999999999998999999999999753    26899999987 899999999999986532      59999


Q ss_pred             EEecCCC-C---CcceeEEEEeCcccccccCCCCCCCCCcceEEEEEeecC----CCCCccEEEEEEEEe
Q 021949           83 IKSDGLL-G---DKTVGEVIVPIKELLDSSSSSSSGDAKSMKFVTYQVRSS----SGKPKGELHFSYKFS  144 (305)
Q Consensus        83 V~d~~~~-~---d~~IG~~~vpL~~l~~~~~~~~~~~g~~~~~~~~~l~~~----~g~~~G~l~lsl~~~  144 (305)
                      |||++.+ +   |+|||++.|+|.+|....    .     ....++.|...    ..+.+|+|+|+|+.+
T Consensus        72 v~d~d~~~~~~~d~~lG~~~i~l~~l~~~~----~-----~~~~~~~L~~~~~~~~~~~~G~i~v~l~~r  132 (132)
T 3pyc_A           72 VWNHKKIHKKQGAGFLGCVRLLSNAISRLK----D-----TGYQRLDLCKLNPSDTDAVRGQIVVSLQTR  132 (132)
T ss_dssp             EEEGGGTTSSTTTTEEEEEEECHHHHHHHT----T-----SCCEEEECBCSSTTCCCCCCSEEEEEEEEC
T ss_pred             EEECCCCCCCCCCCceEEEEEeHHHhhccc----c-----cCcEEEeeeecCCCCCCceeEEEEEEEEcC
Confidence            9999887 3   799999999999985322    1     12355777653    224689999999763

>1rlw_A Phospholipase A2, CALB domain; hydrolase, C2 domain; 2.40A {Homo sapiens} SCOP: b.7.1.1

Probab=99.84  E-value=1.8e-20  Score=149.72  Aligned_cols=118  Identities=15%  Similarity=0.262  Sum_probs=94.9

Q ss_pred             cceEEEEEEEecCCCCC---CCCCCCCcEEEEEEecCCCCCCceEEeEecCCCCCCCeeeceEEEEeccchhccCceEEE
Q 021949            4 YRALDLNLISAKHLKDV---HLISKMDVYAVVSISGDHTIKKQKVKSHVDRSGGSNPTWNFPIKFTFNQSLAQQNRLTLD   80 (305)
Q Consensus         4 ~~~L~V~vvsA~dL~~~---~~~gk~dpYv~v~l~~~~~~~~~~~kT~v~k~~~~nP~Wne~f~f~v~~~~~~~~~~~L~   80 (305)
                      .++|+|+|++|++|...   +.++++||||++++.+..   ..++||+++++ +.||+|||+|.|.+....    ...|+
T Consensus         2 ~~~L~v~v~~a~~L~~~~~~d~~g~~dpyv~v~~~~~~---~~~~kT~v~~~-t~nP~wne~f~f~v~~~~----~~~l~   73 (126)
T 1rlw_A            2 SHKFTVVVLRATKVTKGAFGDMLDTPDPYVELFISTTP---DSRKRTRHFNN-DINPVWNETFEFILDPNQ----ENVLE   73 (126)
T ss_dssp             CEEEEEEEEEEESCCSCHHHHHHCCCCEEEEEECTTST---TCCEECCCCTT-CSSCEEEEEEEEEECTTS----CCEEE
T ss_pred             CcEEEEEEEeeeCCCCCCccccCCCCCCEEEEEEccCC---CceEEccccCC-CCCCcccceEEEEecCCC----CCEEE
Confidence            57899999999999983   556899999999998643   36899999987 799999999999995432    25899


Q ss_pred             EEEEecCCCCCcceeEEEEeCcccccccCCCCCCCCCcceEEEEEeecCCCCCccEEEEEEE
Q 021949           81 FKIKSDGLLGDKTVGEVIVPIKELLDSSSSSSSGDAKSMKFVTYQVRSSSGKPKGELHFSYK  142 (305)
Q Consensus        81 v~V~d~~~~~d~~IG~~~vpL~~l~~~~~~~~~~~g~~~~~~~~~l~~~~g~~~G~l~lsl~  142 (305)
                      |+|||++.++|++||++.|+|.+|....          ....|+.|..   ..+|.|+|+++
T Consensus        74 i~V~d~d~~~~~~iG~~~i~l~~l~~~~----------~~~~~~~L~~---~~~g~i~~~le  122 (126)
T 1rlw_A           74 ITLMDANYVMDETLGTATFTVSSMKVGE----------KKEVPFIFNQ---VTEMVLEMSLE  122 (126)
T ss_dssp             EEEEECCSSCCEEEEEEEEEGGGSCTTC----------EEEEEEEETT---TEEEEEEEEEE
T ss_pred             EEEEECCCCCCceeEEEEEEHHHccCCC----------cEEEEEEcCC---CceEEEEEEEE
Confidence            9999999888999999999999987422          3467888864   33455555544

>2nq3_A Itchy homolog E3 ubiquitin protein ligase; C2 domain, UBL conjugation pathway, structural genomics consortium, SGC; 1.80A {Homo sapiens} SCOP: b.7.1.1

Probab=99.83  E-value=5.3e-20  Score=156.02  Aligned_cols=126  Identities=22%  Similarity=0.275  Sum_probs=100.5

Q ss_pred             ccceEEEEEEEecCCCCCCCCCCCCcEEEEEEecCCCCCCceEEeEecCCCCCCCeeeceEEEEeccchhccCceEEEEE
Q 021949            3 SYRALDLNLISAKHLKDVHLISKMDVYAVVSISGDHTIKKQKVKSHVDRSGGSNPTWNFPIKFTFNQSLAQQNRLTLDFK   82 (305)
Q Consensus         3 ~~~~L~V~vvsA~dL~~~~~~gk~dpYv~v~l~~~~~~~~~~~kT~v~k~~~~nP~Wne~f~f~v~~~~~~~~~~~L~v~   82 (305)
                      ..++|+|+|++|++|...+.++++||||+|++.+      .++||+++++ +.||+|||+|.|.+..      ...|.|+
T Consensus        34 ~~~~L~V~V~~A~~L~~~~~~~~sDPYv~v~~~~------~~~kT~v~~~-tlnP~Wne~f~f~v~~------~~~L~~~  100 (173)
T 2nq3_A           34 MKSQLQITVISAKLKENKKNWFGPSPYVEVTVDG------QSKKTEKCNN-TNSPKWKQPLTVIVTP------VSKLHFR  100 (173)
T ss_dssp             CCEEEEEEEEEEEECCCC--CCCCCEEEEEEETT------EEEECCCCSS-CSSCEEEEEEEEEECT------TCEEEEE
T ss_pred             CceEEEEEEEEeECCCCcccCCCCCeEEEEEECC------EEeEccccCC-CCCCeECCEEEEEeCC------CCEEEEE
Confidence            4578999999999999544455699999999975      6899999987 8999999999999853      2589999


Q ss_pred             EEecCCC-CCcceeEEEEeCcccccccCCCCCCCCCcceEEEEEeecC--CCCCccEEEEEEEEecc
Q 021949           83 IKSDGLL-GDKTVGEVIVPIKELLDSSSSSSSGDAKSMKFVTYQVRSS--SGKPKGELHFSYKFSEP  146 (305)
Q Consensus        83 V~d~~~~-~d~~IG~~~vpL~~l~~~~~~~~~~~g~~~~~~~~~l~~~--~g~~~G~l~lsl~~~~~  146 (305)
                      |||++.+ .|++||++.|+|.+|....    .+. .+....|+.|...  +.+..|+|.|+|++...
T Consensus       101 V~D~d~~~~dd~lG~~~i~l~~l~~~~----~~~-~~~~~~~~~L~~~~~~~~~~G~L~v~l~~l~~  162 (173)
T 2nq3_A          101 VWSHQTLKSDVLLGTAALDIYETLKSN----NMK-LEEVVVTLQLGGDKEPTETIGDLSICLDGLQL  162 (173)
T ss_dssp             EEECCSSSCCEEEEEEEEEHHHHHHHT----TTE-ESSEEEEEEEEESSCTTSEEEEEEEEEESEEC
T ss_pred             EEECCCCCCCceEEEEEEEHHHhcccC----CCC-cceeEEEEECccCCCCCcccEEEEEEEeeeec
Confidence            9999988 7899999999999998643    211 0112568888765  34568999999998865

>2cjt_A UNC-13 homolog A, MUNC13-1; phorbol-ester binding, neurotransmitter release, RIM, MUNC13 domains, exocytosis, metal-binding; 1.44A {Rattus norvegicus} SCOP: b.7.1.1

Probab=99.81  E-value=1.2e-19  Score=146.98  Aligned_cols=121  Identities=23%  Similarity=0.322  Sum_probs=84.9

Q ss_pred             CccceEEEEEEEecCCCCCCCCCCCCcEEEEEEecCCCCCCceEEeEecCCCCCCCeeeceEEEEeccchhccCceEEEE
Q 021949            2 ASYRALDLNLISAKHLKDVHLISKMDVYAVVSISGDHTIKKQKVKSHVDRSGGSNPTWNFPIKFTFNQSLAQQNRLTLDF   81 (305)
Q Consensus         2 ~~~~~L~V~vvsA~dL~~~~~~gk~dpYv~v~l~~~~~~~~~~~kT~v~k~~~~nP~Wne~f~f~v~~~~~~~~~~~L~v   81 (305)
                      |+.+.|.|+|++|++|..   .+++||||+|+  .      .+.+|+++++++.||+|||+|.|.+....     ..|+|
T Consensus         2 ~~~~~L~V~V~~A~~l~~---~g~~DPYv~v~--~------~~~kt~~~~~~t~nP~WnE~f~f~v~~~~-----~~L~~   65 (131)
T 2cjt_A            2 GVMSLLCVGVKKAKFDGA---QEKFNTYVTLK--V------QNVKSTTIAVRGSQPSWEQDFMFEINRLD-----LGLTV   65 (131)
T ss_dssp             CCCEEEEEEEEEEECSSC---GGGCEEEEEEE--E------TTEEEECCCEESSSCEEEEEEEEEECCCS-----SEEEE
T ss_pred             CcceEEEEEEEEeECCCC---CCCcCeEEEEE--e------cCEEEeEecCCCCCceECCEEEEEEeCCC-----CeEEE
Confidence            466899999999998853   57899999999  2      23456666545899999999999997532     47999


Q ss_pred             EEEecCCC-CCcceeEEEEeCcccccccCCCCCCCCC-cceEEEEEeecCCCCCccE-------EEEEEEEe
Q 021949           82 KIKSDGLL-GDKTVGEVIVPIKELLDSSSSSSSGDAK-SMKFVTYQVRSSSGKPKGE-------LHFSYKFS  144 (305)
Q Consensus        82 ~V~d~~~~-~d~~IG~~~vpL~~l~~~~~~~~~~~g~-~~~~~~~~l~~~~g~~~G~-------l~lsl~~~  144 (305)
                      +|||++ + +|++||++.|+|.+|....     .++. .+...+|++..++++.+|+       |.++++|.
T Consensus        66 ~V~D~d-~~~dd~iG~~~i~l~~l~~~~-----~~~~~~~~~~~~~~~~~~g~~~G~~~p~~~~~~~~~~~~  131 (131)
T 2cjt_A           66 EVWNKG-LIWDTMVGTVWIPLRTIRQSN-----EEGPGEWLTLDSQAIMADSEICGTKDPTFHRILLDAHFE  131 (131)
T ss_dssp             EEEECC-SSCEEEEEEEEEEGGGSCBCS-----SCCCCEEEECBC----------CCSCCCCCEEEEEEEEC
T ss_pred             EEEECC-CCCCCeEEEEEEEHHHhhhcC-----CCCccccEEcccccccCCCcCcceECCCccEEEEEEEeC
Confidence            999999 6 8999999999999987533     1221 2334456666666776666       88888773

>2b3r_A Phosphatidylinositol-4-phosphate 3-kinase C2 DOMA containing alpha polypeptide; C2 domain, lipid binding, PI3-kinase, transferase; 2.30A {Mus musculus}

Probab=99.79  E-value=1.3e-18  Score=141.11  Aligned_cols=110  Identities=20%  Similarity=0.273  Sum_probs=90.2

Q ss_pred             cceEEEEEEEecCCCCCCCCCCCCcEEEEEEecCCCCCCceEEeEecCCCCCCCeeeceEEEE-eccchhccCceEEEEE
Q 021949            4 YRALDLNLISAKHLKDVHLISKMDVYAVVSISGDHTIKKQKVKSHVDRSGGSNPTWNFPIKFT-FNQSLAQQNRLTLDFK   82 (305)
Q Consensus         4 ~~~L~V~vvsA~dL~~~~~~gk~dpYv~v~l~~~~~~~~~~~kT~v~k~~~~nP~Wne~f~f~-v~~~~~~~~~~~L~v~   82 (305)
                      .+.|+|+|++|++|+. +.++++||||+|++..+.. ...++||+++++ +.||+|||+|.|. +....+  ....|.|+
T Consensus        19 ~~~L~V~V~~a~~L~~-~~~g~~DPyv~v~l~~~~~-~~~~~kT~v~~~-t~nP~wnE~f~f~~v~~~~l--~~~~L~~~   93 (134)
T 2b3r_A           19 NGTLFIMVMHIKDLVT-EDGADPNPYVKTYLLPDTH-KTSKRKTKISRK-TRNPTFNEMLVYSGYSKETL--RQRELQLS   93 (134)
T ss_dssp             TTEEEEEEEEEECCCC-TTSCCCCEEEEEEEESCSS-SCCCEECCCCCS-CSSCEEEEEEEEESCCHHHH--TTCEEEEE
T ss_pred             CCEEEEEEEEeeCCCC-CCCCCCCeEEEEEEEcCCC-CCceecCCcCcC-CCCCCCccEEEECCcCHHHh--CcCEEEEE
Confidence            4789999999999996 6678999999999975422 146899999987 8999999999999 765433  22589999


Q ss_pred             EEecCCC-CCcceeEEEEeCcccccccCCCCCCCCCcceEEEEEeec
Q 021949           83 IKSDGLL-GDKTVGEVIVPIKELLDSSSSSSSGDAKSMKFVTYQVRS  128 (305)
Q Consensus        83 V~d~~~~-~d~~IG~~~vpL~~l~~~~~~~~~~~g~~~~~~~~~l~~  128 (305)
                      |||++.+ +|++||++.|+|.++....          ....||.|..
T Consensus        94 V~d~d~~~~~~~lG~~~i~l~~l~~~~----------~~~~W~~L~~  130 (134)
T 2b3r_A           94 VLSAESLRENFFLGGITLPLKDFNLSK----------ETVKWYQLTA  130 (134)
T ss_dssp             EEECCSSSCCEEEEEEEEEGGGSCTTS----------CEEEEEECBC
T ss_pred             EEECCCCCCCcEEEEEEEEhhhccCCC----------CcceeEECCC
Confidence            9999988 7899999999999997422          2477999875

>1a25_A CALB, protein kinase C (beta); calcium++/phospholipid binding protein, calcium-binding protein; HET: PSE; 2.70A {Rattus norvegicus} SCOP: b.7.1.2

Probab=99.79  E-value=1.4e-18  Score=143.01  Aligned_cols=109  Identities=21%  Similarity=0.230  Sum_probs=92.2

Q ss_pred             cceEEEEEEEecCCCCCCCCCCCCcEEEEEEecCCCCCCceEEeEecCCCCCCCeeeceEEEEeccchhccCceEEEEEE
Q 021949            4 YRALDLNLISAKHLKDVHLISKMDVYAVVSISGDHTIKKQKVKSHVDRSGGSNPTWNFPIKFTFNQSLAQQNRLTLDFKI   83 (305)
Q Consensus         4 ~~~L~V~vvsA~dL~~~~~~gk~dpYv~v~l~~~~~~~~~~~kT~v~k~~~~nP~Wne~f~f~v~~~~~~~~~~~L~v~V   83 (305)
                      .++|+|+|++|++|...+.++++||||+|++..+.. ...++||+++++ +.||+|||+|.|.+.....   ...|+|+|
T Consensus        30 ~~~L~v~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~-~~~~~kT~v~~~-t~nP~wne~f~f~v~~~~~---~~~L~i~V  104 (149)
T 1a25_A           30 REVLIVVVRDAKNLVPMDPNGLSDPYVKLKLIPDPK-SESKQKTKTIKC-SLNPEWNETFRFQLKESDK---DRRLSVEI  104 (149)
T ss_dssp             SSEEEEEEEEEESCCCCSTTSCCCEEEEEEEESCTT-CSSCEECCCCSS-CSSCEEEEEEEEECCSGGG---GCEEEEEE
T ss_pred             CCEEEEEEEEeeCCCCCCCCCCcCeEEEEEEECCCC-CcceEecceeCC-CCCCcCCcEEEEEeccccC---CCEEEEEE
Confidence            467999999999999998889999999999986432 146899999998 8999999999999976432   24799999


Q ss_pred             EecCCC-CCcceeEEEEeCcccccccCCCCCCCCCcceEEEEEeec
Q 021949           84 KSDGLL-GDKTVGEVIVPIKELLDSSSSSSSGDAKSMKFVTYQVRS  128 (305)
Q Consensus        84 ~d~~~~-~d~~IG~~~vpL~~l~~~~~~~~~~~g~~~~~~~~~l~~  128 (305)
                      ||++.+ +|++||++.|+|.+|....           ...||.|..
T Consensus       105 ~d~d~~~~~~~iG~~~i~l~~l~~~~-----------~~~W~~L~~  139 (149)
T 1a25_A          105 WDWDLTSRNDFMGSLSFGISELQKAG-----------VDGWFKLLS  139 (149)
T ss_dssp             EECCSSSCCEEEEEEEEEHHHHTTCC-----------EEEEEECBC
T ss_pred             EECCCCCCCCEEEEEEEEHHHhCcCc-----------cCCeEEccC
Confidence            999988 7899999999999997422           467899875

>3f04_A Synaptotagmin-1; C2A, calcium, cell junction, cytoplasmic vesicle, glycoprotein, lipoprotein, membrane, metal- binding, palmitate, phosphoprotein; 1.35A {Homo sapiens} SCOP: b.7.1.2 PDB: 3f01_A 3f05_A 3f00_A 1byn_A 2k45_A 2k4a_A 2k8m_A 2ki6_A*

Probab=99.79  E-value=8.5e-19  Score=143.18  Aligned_cols=110  Identities=22%  Similarity=0.230  Sum_probs=91.9

Q ss_pred             ccceEEEEEEEecCCCCCCCCCCCCcEEEEEEecCCCCCCceEEeEecCCCCCCCeeeceEEEEeccchhccCceEEEEE
Q 021949            3 SYRALDLNLISAKHLKDVHLISKMDVYAVVSISGDHTIKKQKVKSHVDRSGGSNPTWNFPIKFTFNQSLAQQNRLTLDFK   82 (305)
Q Consensus         3 ~~~~L~V~vvsA~dL~~~~~~gk~dpYv~v~l~~~~~~~~~~~kT~v~k~~~~nP~Wne~f~f~v~~~~~~~~~~~L~v~   82 (305)
                      ..+.|+|+|++|++|+..+.++++||||+|++..+.   ..+++|+++++ +.||+|||+|.|.+....+.  ...|+|+
T Consensus        32 ~~~~L~v~v~~a~~L~~~d~~g~~dpyv~v~l~~~~---~~~~kT~v~~~-t~nP~wne~f~f~v~~~~l~--~~~L~i~  105 (143)
T 3f04_A           32 QNNQLLVGIIQAAELPALDMGGTSDPYVKVFLLPDK---KKKFETKVHRK-TLNPVFNEQFTFKVPYSELG--GKTLVMA  105 (143)
T ss_dssp             TTTEEEEEEEEEECCCCBGGGBCCCEEEEEEEESCC---SCCEECCCCCS-CSSCEEEEEEEECCCHHHHT--TCEEEEE
T ss_pred             CCCEEEEEEEEecCCCCCCCCCCcCcEEEEEEECCC---CccEECccCcC-CCCCcCcCeEEEeecHhhcC--CCEEEEE
Confidence            457899999999999998888899999999997543   36899999888 79999999999998654432  2589999


Q ss_pred             EEecCCC-CCcceeEEEEeCcccccccCCCCCCCCCcceEEEEEeec
Q 021949           83 IKSDGLL-GDKTVGEVIVPIKELLDSSSSSSSGDAKSMKFVTYQVRS  128 (305)
Q Consensus        83 V~d~~~~-~d~~IG~~~vpL~~l~~~~~~~~~~~g~~~~~~~~~l~~  128 (305)
                      |||++.+ +|++||++.|+|.++....          ....||.|..
T Consensus       106 V~d~d~~~~~~~iG~~~i~l~~l~~~~----------~~~~W~~L~~  142 (143)
T 3f04_A          106 VYDFDRFSKHDIIGEFKVPMNTVDFGH----------VTEEWRDLQS  142 (143)
T ss_dssp             EEECCSSSCCEEEEEEEEEGGGCCTTS----------CEEEEEECBC
T ss_pred             EEeCCCCCCCceEEEEEEEHHHccCCC----------CcceEEECcC
Confidence            9999988 7899999999999987432          2467888863

>1rsy_A Synaptotagmin I; calcium/phospholipid binding protein; 1.90A {Rattus norvegicus} SCOP: b.7.1.2

Probab=99.79  E-value=1.5e-18  Score=143.51  Aligned_cols=110  Identities=22%  Similarity=0.230  Sum_probs=92.0

Q ss_pred             ccceEEEEEEEecCCCCCCCCCCCCcEEEEEEecCCCCCCceEEeEecCCCCCCCeeeceEEEEeccchhccCceEEEEE
Q 021949            3 SYRALDLNLISAKHLKDVHLISKMDVYAVVSISGDHTIKKQKVKSHVDRSGGSNPTWNFPIKFTFNQSLAQQNRLTLDFK   82 (305)
Q Consensus         3 ~~~~L~V~vvsA~dL~~~~~~gk~dpYv~v~l~~~~~~~~~~~kT~v~k~~~~nP~Wne~f~f~v~~~~~~~~~~~L~v~   82 (305)
                      ..+.|+|+|++|++|...+.++++||||+|++..+.   ..++||+++++ +.||+|||+|.|.+....+.  ...|+|+
T Consensus        40 ~~~~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~---~~~~kT~v~~~-t~nP~wne~f~f~v~~~~l~--~~~L~i~  113 (152)
T 1rsy_A           40 QNNQLLVGIIQAAELPALDMGGTSDPYVKVFLLPDK---KKKFETKVHRK-TLNPVFNEQFTFKVPYSELG--GKTLVMA  113 (152)
T ss_dssp             TTTEEEEEEEEEESCCCCSTTSCCCEEEEEEEETTC---CSCEECCCCTT-CSSCEEEEEEEECCCHHHHT--TCEEEEE
T ss_pred             CCCEEEEEEEEeECCCCccCCCCcCeEEEEEEEcCC---CceEeccccCC-CCCCcCcccEEEeecHHHcC--CCEEEEE
Confidence            357899999999999999888999999999997543   36889999988 79999999999998654332  2589999


Q ss_pred             EEecCCC-CCcceeEEEEeCcccccccCCCCCCCCCcceEEEEEeec
Q 021949           83 IKSDGLL-GDKTVGEVIVPIKELLDSSSSSSSGDAKSMKFVTYQVRS  128 (305)
Q Consensus        83 V~d~~~~-~d~~IG~~~vpL~~l~~~~~~~~~~~g~~~~~~~~~l~~  128 (305)
                      |||++.+ +|++||++.|+|.++....          ....||.|..
T Consensus       114 V~d~d~~~~~~~iG~~~i~l~~l~~~~----------~~~~W~~L~~  150 (152)
T 1rsy_A          114 VYDFDRFSKHDIIGEFKVPMNTVDFGH----------VTEEWRDLQS  150 (152)
T ss_dssp             EEECCSSSCCEEEEEEEEEGGGCCCSS----------CEEEEEECBC
T ss_pred             EEECCCCCCCcEEEEEEEEchhccCCC----------CcceEEECCC
Confidence            9999988 7999999999999986422          2477998874

>2z0u_A WW domain-containing protein 1; C2 domain, alternative splicing, coiled coil, cytoplasm, phosphorylation, polymorphism, lipid binding protein; 2.20A {Homo sapiens}

Probab=99.79  E-value=3.7e-19  Score=148.18  Aligned_cols=113  Identities=10%  Similarity=0.071  Sum_probs=92.0

Q ss_pred             ccceEEEEEEEecCCCCCCCCCCCCcEEEEEEecCCCCCCceEEeEecCCCCCCCeeeceEEEEeccchhccCceEEEEE
Q 021949            3 SYRALDLNLISAKHLKDVHLISKMDVYAVVSISGDHTIKKQKVKSHVDRSGGSNPTWNFPIKFTFNQSLAQQNRLTLDFK   82 (305)
Q Consensus         3 ~~~~L~V~vvsA~dL~~~~~~gk~dpYv~v~l~~~~~~~~~~~kT~v~k~~~~nP~Wne~f~f~v~~~~~~~~~~~L~v~   82 (305)
                      ..+.|+|+|++|++|...+.++++||||++++.+.......++||+++++ ++||+|||+|.|.|....+.  ...|+|+
T Consensus        41 ~~~~L~V~Vi~a~~L~~~d~~g~sDPyVkv~l~~~~~~~~~~~kT~v~~~-tlnP~wnE~F~f~v~~~~l~--~~~L~~~  117 (155)
T 2z0u_A           41 KNKQFAILIIQLSNLSALLQQQDQKVNIRVAVLPCSESTTCLFRTRPLDA-SDTLVFNEVFWVSMSYPALH--QKTLRVD  117 (155)
T ss_dssp             TTTEEEEEEEEEECGGGTCCSCCSEEEEEEEEESCSCHHHHEEECCCEEC-CSSEEEEEEEEEECCHHHHH--HCEEEEE
T ss_pred             CCCEEEEEEEEccCcCCcccCCCCCEEEEEEEecCCCCCccceeCCcCCC-CCCCccccEEEEEcCHHHhC--cCEEEEE
Confidence            35789999999999999988899999999999863221134899999988 89999999999998765432  2589999


Q ss_pred             EEecCCC-CCcceeEEEEeCcccccccCCCCCCCCCcceEEEEEee
Q 021949           83 IKSDGLL-GDKTVGEVIVPIKELLDSSSSSSSGDAKSMKFVTYQVR  127 (305)
Q Consensus        83 V~d~~~~-~d~~IG~~~vpL~~l~~~~~~~~~~~g~~~~~~~~~l~  127 (305)
                      |||++.+ +|++||++.|+|.++....         .....||.|.
T Consensus       118 V~d~d~~~~~d~iG~~~i~l~~l~~~~---------~~~~~W~~L~  154 (155)
T 2z0u_A          118 VCTTDRSHLEECLGGAQISLAEVCRSG---------ERSTRWYNLL  154 (155)
T ss_dssp             EEEECTTSCEEEEEEEEEECTTSCTTC---------CCEEEEEEEB
T ss_pred             EEECCCCCCCcEEEEEEEEHHHccCCC---------CccccceEcc
Confidence            9999988 7899999999999986322         1247788875

>2d8k_A Synaptotagmin VII; exocytosis, calcium binding, lysosome, C2 domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.79  E-value=1.4e-18  Score=141.69  Aligned_cols=111  Identities=19%  Similarity=0.306  Sum_probs=91.7

Q ss_pred             ccceEEEEEEEecCCCCCCCCCCCCcEEEEEEecCCCCCCceEEeEecCCCCCCCeeeceEEEEecc-chhccCceEEEE
Q 021949            3 SYRALDLNLISAKHLKDVHLISKMDVYAVVSISGDHTIKKQKVKSHVDRSGGSNPTWNFPIKFTFNQ-SLAQQNRLTLDF   81 (305)
Q Consensus         3 ~~~~L~V~vvsA~dL~~~~~~gk~dpYv~v~l~~~~~~~~~~~kT~v~k~~~~nP~Wne~f~f~v~~-~~~~~~~~~L~v   81 (305)
                      ..+.|+|+|++|++|...+.++++||||+|++.++.   ..++||+++++ +.||+|||+|.|.+.. ..+  ....|.|
T Consensus        24 ~~~~L~v~v~~a~~L~~~d~~g~~dpyv~v~~~~~~---~~~~kT~v~~~-t~nP~wne~f~f~~~~~~~~--~~~~l~i   97 (141)
T 2d8k_A           24 QESTLTVKIMKAQELPAKDFSGTSDPFVKIYLLPDK---KHKLETKVKRK-NLNPHWNETFLFEGFPYEKV--VQRILYL   97 (141)
T ss_dssp             SSCCEEEEEEEEESCCCCSSSSCCCEEEEEEEESCC---SSEEECCCCTT-CSSCCCCEEEEECSCCHHHH--TTSEEEE
T ss_pred             CCCEEEEEEEEeECCCCCCCCCCCCcEEEEEEECCC---CccEeCceEcC-CCCCccccEEEECccCHHHc--ccCEEEE
Confidence            457899999999999999888999999999997543   36899999887 8999999999998532 222  2358999


Q ss_pred             EEEecCCC-CCcceeEEEEeCcccccccCCCCCCCCCcceEEEEEeecC
Q 021949           82 KIKSDGLL-GDKTVGEVIVPIKELLDSSSSSSSGDAKSMKFVTYQVRSS  129 (305)
Q Consensus        82 ~V~d~~~~-~d~~IG~~~vpL~~l~~~~~~~~~~~g~~~~~~~~~l~~~  129 (305)
                      +|||++.+ +|++||++.|+|.+|....          ....||.|...
T Consensus        98 ~V~d~d~~~~~~~iG~~~i~l~~l~~~~----------~~~~W~~L~~~  136 (141)
T 2d8k_A           98 QVLDYDRFSRNDPIGEVSIPLNKVDLTQ----------MQTFWKDLKPS  136 (141)
T ss_dssp             EEEECCSSSSCEEEEEEEEETTTSCTTS----------CEEEEECCEEC
T ss_pred             EEEECCCCCCCcEEEEEEEEhhhhcCCC----------CccEEEECcCC
Confidence            99999988 7899999999999997532          25779988864

>1v27_A Regulating synaptic membrane exocytosis protein 2; RAB3-interacting molecule, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.7.1.2

Probab=99.78  E-value=1.1e-18  Score=141.96  Aligned_cols=116  Identities=16%  Similarity=0.255  Sum_probs=92.9

Q ss_pred             cceEEEEEEEecCCCCCCCCCCCCcEEEEEEecCCCCCCceEEeEecCCCCCCCeeeceEEEEe-ccchhccCceEEEEE
Q 021949            4 YRALDLNLISAKHLKDVHLISKMDVYAVVSISGDHTIKKQKVKSHVDRSGGSNPTWNFPIKFTF-NQSLAQQNRLTLDFK   82 (305)
Q Consensus         4 ~~~L~V~vvsA~dL~~~~~~gk~dpYv~v~l~~~~~~~~~~~kT~v~k~~~~nP~Wne~f~f~v-~~~~~~~~~~~L~v~   82 (305)
                      .+.|+|+|++|++|...+.++++||||+|++..+.. ...++||+++++ +.||+|||+|.|.+ ....+  ....|+|+
T Consensus        20 ~~~L~v~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~-~~~~~kT~~~~~-t~nP~wne~f~f~~~~~~~~--~~~~l~i~   95 (141)
T 1v27_A           20 GHQLIVTILGAKDLPSREDGRPRNPYVKIYFLPDRS-DKNKRRTKTVKK-TLEPKWNQTFIYSPVHRREF--RERMLEIT   95 (141)
T ss_dssp             TTEEEEEEEEEESCCCCSSSCCCCEEEECCCSSCCS-SSSCCBCCCCSS-CSSCCCCCCCEECSCCTTGG--GTCEEEEE
T ss_pred             CCEEEEEEEEccCCCCcCCCCCCCCEEEEEEecCCC-CCcceeCccccC-CCCCccccEEEEccCCHHHh--cCCEEEEE
Confidence            578999999999999998889999999999965321 147899999988 89999999999994 43322  23589999


Q ss_pred             EEecCCC-C--CcceeEEEEeCcccccccCCCCCCCCCcceEEEEEeecC-CCCCc
Q 021949           83 IKSDGLL-G--DKTVGEVIVPIKELLDSSSSSSSGDAKSMKFVTYQVRSS-SGKPK  134 (305)
Q Consensus        83 V~d~~~~-~--d~~IG~~~vpL~~l~~~~~~~~~~~g~~~~~~~~~l~~~-~g~~~  134 (305)
                      |||++.+ .  |++||++.|+|.++....           ...||.|... +++..
T Consensus        96 V~d~d~~~~~~~~~lG~~~i~l~~l~~~~-----------~~~W~~L~~~~~g~~s  140 (141)
T 1v27_A           96 LWDQARVREEESEFLGEILIELETALLDD-----------EPHWYKLQTHDSGPSS  140 (141)
T ss_dssp             EEEBCSSSSCCBCCCEEEEEEGGGCCCSS-----------EEEEEECBCCSSCCCC
T ss_pred             EEECCCCcCCCCceEEEEEEEccccCCCC-----------CCceEECcccccCCCC
Confidence            9999988 4  899999999999987422           4679999864 34443

>3fbk_A RGS3, RGP3, regulator of G-protein signaling 3; all beta-sheet fold, structural genomics, PSI-2, protein structure initiative; 2.00A {Homo sapiens} SCOP: b.7.1.0

Probab=99.78  E-value=1.1e-18  Score=144.52  Aligned_cols=122  Identities=16%  Similarity=0.137  Sum_probs=95.6

Q ss_pred             ccceEEEEEEEecCCCCCCCCCCCCcEEEEEEecCCCCCCceEEeEecCCCCCCCeeeceEEEEeccchhccCceEEEEE
Q 021949            3 SYRALDLNLISAKHLKDVHLISKMDVYAVVSISGDHTIKKQKVKSHVDRSGGSNPTWNFPIKFTFNQSLAQQNRLTLDFK   82 (305)
Q Consensus         3 ~~~~L~V~vvsA~dL~~~~~~gk~dpYv~v~l~~~~~~~~~~~kT~v~k~~~~nP~Wne~f~f~v~~~~~~~~~~~L~v~   82 (305)
                      ..+.|.|+|++|++|...+ ++++||||+|++..+... ..+++|+++++ +.||+|||+|.|.+......   ..|.|+
T Consensus        25 ~~~~L~V~v~~a~~L~~~d-~g~~Dpyv~v~l~~~~~~-~~~~kT~v~~~-t~nP~wne~f~f~v~~~~~~---~~L~i~   98 (153)
T 3fbk_A           25 QDRVLLLHIIEGKGLISKQ-PGTCDPYVKISLIPEDSR-LRHQKTQTVPD-CRDPAFHEHFFFPVQEEDDQ---KRLLVT   98 (153)
T ss_dssp             SSSEEEEEEEEEESCCCCS-SSCCCEEEEEEEESCSCC-TTCEECCCCTT-CSSCEEEEEEEEECCGGGTT---SEEEEE
T ss_pred             CCCEEEEEEEEeeCCCCCC-CCCCCEEEEEEEEcCCCC-ccEEeccccCC-CCCCccccEEEEecccHHhC---CEEEEE
Confidence            4578999999999999888 689999999999754322 47899999987 89999999999998654432   359999


Q ss_pred             EEecCCC-C-CcceeEEEEeCcccccccCCCCCCCCCcceEEEEEeecCCCCCccEEEE
Q 021949           83 IKSDGLL-G-DKTVGEVIVPIKELLDSSSSSSSGDAKSMKFVTYQVRSSSGKPKGELHF  139 (305)
Q Consensus        83 V~d~~~~-~-d~~IG~~~vpL~~l~~~~~~~~~~~g~~~~~~~~~l~~~~g~~~G~l~l  139 (305)
                      |||++.+ + |++||++.|+|.+|....         .....||.|...+....+.|.+
T Consensus        99 V~d~d~~~~~d~~lG~~~i~l~~l~~~~---------~~~~~W~~L~~~~~g~~~~lkv  148 (153)
T 3fbk_A           99 VWNRASQSRQSGLIGCMSFGVKSLLTPD---------KEISGWYYLLGEHLGRTKHLKV  148 (153)
T ss_dssp             EEECCSSGGGCEEEEEEEEEHHHHTC-----------CCEEEEEECBCTTGGGTCCCBC
T ss_pred             EEeCCCCCCCCcEEEEEEEEHHHhcCCC---------CccccEEECCChhhccccccee
Confidence            9999987 5 899999999999997412         1247799998754433444443

>3fdw_A Synaptotagmin-like protein 4; structural genomics, phospholipid binding, alternative splicing, cell membrane, cytoplasmic vesicle, membrane; 2.20A {Homo sapiens}

Probab=99.78  E-value=1.5e-18  Score=142.78  Aligned_cols=114  Identities=15%  Similarity=0.239  Sum_probs=93.3

Q ss_pred             ccceEEEEEEEecCCCCCC-CCCCCCcEEEEEEecCCCCCCceEEeEecCCCCCCCeeeceEEEEeccchhccCceEEEE
Q 021949            3 SYRALDLNLISAKHLKDVH-LISKMDVYAVVSISGDHTIKKQKVKSHVDRSGGSNPTWNFPIKFTFNQSLAQQNRLTLDF   81 (305)
Q Consensus         3 ~~~~L~V~vvsA~dL~~~~-~~gk~dpYv~v~l~~~~~~~~~~~kT~v~k~~~~nP~Wne~f~f~v~~~~~~~~~~~L~v   81 (305)
                      ..+.|+|+|++|++|...+ .++++||||++++..+.. ...+++|+++++ +.||+|||+|.|.|....+.  ...|+|
T Consensus        21 ~~~~L~V~v~~a~~L~~~d~~~~~~dpyv~v~l~~~~~-~~~~~kT~v~~~-t~nP~wne~f~f~v~~~~~~--~~~L~~   96 (148)
T 3fdw_A           21 QTQSLVVHVKECHQLAYADEAKKRSNPYVKTYLLPDKS-RQGKRKTSIKRD-TVNPLYDETLRYEIPESLLA--QRTLQF   96 (148)
T ss_dssp             TTTEEEEEEEEEESCCCSBTTTTBCCEEEEEEEETCCS-GGGEEECCCCSS-CSSCEEEEEEEEECCSTTGG--GCEEEE
T ss_pred             CCCEEEEEEEEecCCCCcccCCCCCCeEEEEEEEcCCc-ccCccccccCCC-CCCCcEeeEEEEEeChhHhC--ceEEEE
Confidence            3578999999999999877 578999999999986432 135899999987 89999999999998765432  257999


Q ss_pred             EEEecCCC-CCcceeEEEEeCcccccccCCCCCCCCCcceEEEEEeecCC
Q 021949           82 KIKSDGLL-GDKTVGEVIVPIKELLDSSSSSSSGDAKSMKFVTYQVRSSS  130 (305)
Q Consensus        82 ~V~d~~~~-~d~~IG~~~vpL~~l~~~~~~~~~~~g~~~~~~~~~l~~~~  130 (305)
                      +|||++.+ +|++||++.|+|.++....          ....||.|..+.
T Consensus        97 ~V~d~d~~~~~~~iG~~~i~l~~l~~~~----------~~~~W~~L~~~~  136 (148)
T 3fdw_A           97 SVWHHGRFGRNTFLGEAEIQMDSWKLDK----------KLDHCLPLHGKI  136 (148)
T ss_dssp             EEEEECGGGCEEEEEEEEEEHHHHHHHC----------CSEEEEECBCC-
T ss_pred             EEEECCCCcCCcEEEEEEEEcccccccC----------CccceEECcCcc
Confidence            99999988 7899999999999997533          236799998643

>1ugk_A Synaptotagmin IV, KIAA1342; beta sandwich, structural genomics, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Homo sapiens} SCOP: b.7.1.2

Probab=99.78  E-value=4.8e-18  Score=137.97  Aligned_cols=111  Identities=26%  Similarity=0.369  Sum_probs=90.1

Q ss_pred             ccceEEEEEEEecCCCCCCCC-CCCCcEEEEEEecCCCCCCceEEeEecCCCCCCCeeeceEEEE-eccchhccCceEEE
Q 021949            3 SYRALDLNLISAKHLKDVHLI-SKMDVYAVVSISGDHTIKKQKVKSHVDRSGGSNPTWNFPIKFT-FNQSLAQQNRLTLD   80 (305)
Q Consensus         3 ~~~~L~V~vvsA~dL~~~~~~-gk~dpYv~v~l~~~~~~~~~~~kT~v~k~~~~nP~Wne~f~f~-v~~~~~~~~~~~L~   80 (305)
                      ..+.|+|+|++|++|...+.+ +++||||++++..+.   ..+++|+++++ +.||+|||+|.|. +....+.  ...|+
T Consensus        20 ~~~~L~v~v~~a~~L~~~d~~~~~~dpyv~v~~~~~~---~~~~kT~v~~~-t~nP~wne~f~f~~v~~~~~~--~~~l~   93 (138)
T 1ugk_A           20 ERKAFVVNIKEARGLPAMDEQSMTSDPYIKMTILPEK---KHKVKTRVLRK-TLDPAFDETFTFYGIPYTQIQ--ELALH   93 (138)
T ss_dssp             GGTEEEEEEEEEESCCCCBTTTTBCEEEEEEEEETTT---CSEEECCCCSS-CSSCEEEEEEEEECCCSTTGG--GCEEE
T ss_pred             CCCEEEEEEEEeeCCCCCCCCCCCCCCEEEEEEecCC---CceEecCcCcC-CCCCcEeeEEEEcCcCHHHhc--cCEEE
Confidence            357899999999999998886 889999999998643   37999999987 8999999999996 6554332  25899


Q ss_pred             EEEEecCCC-CCcceeEEEEeCcccccccCCCCCCCCCcceEEEEEeec
Q 021949           81 FKIKSDGLL-GDKTVGEVIVPIKELLDSSSSSSSGDAKSMKFVTYQVRS  128 (305)
Q Consensus        81 v~V~d~~~~-~d~~IG~~~vpL~~l~~~~~~~~~~~g~~~~~~~~~l~~  128 (305)
                      |+|||++.+ +|++||++.|+|.+|....     +    ....|+.|..
T Consensus        94 i~V~d~d~~~~~~~lG~~~i~l~~l~~~~-----~----~~~~~~~l~~  133 (138)
T 1ugk_A           94 FTILSFDRFSRDDIIGEVLIPLSGIELSE-----G----KMLMNREIIS  133 (138)
T ss_dssp             EEEEEECSSCCCCCCEEEEEECTTCCCTT-----C----CEEEEEECBS
T ss_pred             EEEEECCCCCCCcEEEEEEEehhHccCCC-----C----cchhhhhhhc
Confidence            999999988 7899999999999997532     1    2345677764

>2dmg_A KIAA1228 protein; beta-sandwich, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.77  E-value=1.6e-18  Score=141.37  Aligned_cols=117  Identities=21%  Similarity=0.270  Sum_probs=92.6

Q ss_pred             ccceEEEEEEEecCCCCCCCCCCCCcEEEEEEecCCCCCCceEEeEecCCCCCCCeeeceEEEEeccchhccCceEEEEE
Q 021949            3 SYRALDLNLISAKHLKDVHLISKMDVYAVVSISGDHTIKKQKVKSHVDRSGGSNPTWNFPIKFTFNQSLAQQNRLTLDFK   82 (305)
Q Consensus         3 ~~~~L~V~vvsA~dL~~~~~~gk~dpYv~v~l~~~~~~~~~~~kT~v~k~~~~nP~Wne~f~f~v~~~~~~~~~~~L~v~   82 (305)
                      ..+.|+|+|++|++|...+.++ +||||+|++..+.. ...+++|+++++ +.||+|||+|.|.+....+.  ...|+|+
T Consensus        22 ~~~~L~v~v~~a~~L~~~d~~g-~dpyv~v~l~~~~~-~~~~~kT~v~~~-t~nP~wne~f~f~v~~~~l~--~~~L~i~   96 (142)
T 2dmg_A           22 QRNKLIVVVHACRNLIAFSEDG-SDPYVRMYLLPDKR-RSGRRKTHVSKK-TLNPVFDQSFDFSVSLPEVQ--RRTLDVA   96 (142)
T ss_dssp             TTTEEEEEEEEEECCCCSSTTC-CCEEEEEEEESCCC-SSSCEECCCCCS-CSSCEEEEEEEECCCHHHHH--HCEEEEE
T ss_pred             CCCEEEEEEEEeECCCCCCCCC-CCeeEEEEEEcCCC-CCCcccCCccCC-CCCCCcCceEEEEecHHHhC--cCEEEEE
Confidence            3578999999999999988888 99999999975432 136899999987 89999999999998654332  2489999


Q ss_pred             EEecCCC-C--CcceeEEEEeCcccccccCCCCCCCCCcceEEEEEeecCCCCCc
Q 021949           83 IKSDGLL-G--DKTVGEVIVPIKELLDSSSSSSSGDAKSMKFVTYQVRSSSGKPK  134 (305)
Q Consensus        83 V~d~~~~-~--d~~IG~~~vpL~~l~~~~~~~~~~~g~~~~~~~~~l~~~~g~~~  134 (305)
                      |||++.+ .  |++||++.|+|.++....          ....||.|...+.+..
T Consensus        97 V~d~d~~~~~~~~~iG~~~i~l~~~~~~~----------~~~~W~~L~~~~~~~~  141 (142)
T 2dmg_A           97 VKNSGGFLSKDKGLLGKVLVALASEELAK----------GWTQWYDLTEDSGPSS  141 (142)
T ss_dssp             EEECCCSSCCSCCCCEEEEEECCCSTTTT----------CBCCBCCCBCSCSCCC
T ss_pred             EEECCCccccCCcEEEEEEEecccccccc----------cccceeeccCCCCCCC
Confidence            9999976 3  469999999999987422          2356888887554443

>2bwq_A Regulating synaptic membrane exocytosis protein 2; C2 domain, neurotransmitter release, transport protein; 1.41A {Rattus norvegicus} SCOP: b.7.1.2

Probab=99.77  E-value=3.9e-18  Score=136.58  Aligned_cols=109  Identities=15%  Similarity=0.234  Sum_probs=85.7

Q ss_pred             ccceEEEEEEEecCCCCCCCCCCCCcEEEEEEecCCCCCCceEEeEecCCCCCCCeeeceEEEEe-ccchhccCceEEEE
Q 021949            3 SYRALDLNLISAKHLKDVHLISKMDVYAVVSISGDHTIKKQKVKSHVDRSGGSNPTWNFPIKFTF-NQSLAQQNRLTLDF   81 (305)
Q Consensus         3 ~~~~L~V~vvsA~dL~~~~~~gk~dpYv~v~l~~~~~~~~~~~kT~v~k~~~~nP~Wne~f~f~v-~~~~~~~~~~~L~v   81 (305)
                      ..+.|+|+|++|++|...+.++++||||++++..+.. ...+++|+++++ +.||+|||+|.|.+ .....  ....|+|
T Consensus        16 ~~~~L~v~v~~a~~L~~~d~~~~~dpyv~v~~~~~~~-~~~~~kT~v~~~-t~nP~wne~f~f~~~~~~~~--~~~~l~~   91 (129)
T 2bwq_A           16 VGHQLIVTILGAKDLPSREDGRPRNPYVKIYFLPDRS-DKNKRRTKTVKK-TLEPKWNQTFIYSPVHRREF--RERMLEI   91 (129)
T ss_dssp             TTTEEEEEEEEEESCCCCTTSCCBCEEEEEEEESSCS-GGGEEECCCCSS-BSSCEEEEEEEECSCCGGGG--GGCEEEE
T ss_pred             CCCEEEEEEEEeeCCCCCCCCCCCCCEEEEEEecCCC-CCcceecccccC-CCCCccccEEEEccCCHHHh--cCCeEEE
Confidence            3578999999999999998889999999999975332 147999999988 89999999999995 32222  2358999


Q ss_pred             EEEecCCC-C--CcceeEEEEeCcccccccCCCCCCCCCcceEEEEEe
Q 021949           82 KIKSDGLL-G--DKTVGEVIVPIKELLDSSSSSSSGDAKSMKFVTYQV  126 (305)
Q Consensus        82 ~V~d~~~~-~--d~~IG~~~vpL~~l~~~~~~~~~~~g~~~~~~~~~l  126 (305)
                      +|||++.+ .  |++||++.|+|.++....           ...||.|
T Consensus        92 ~V~d~d~~~~~~~~~lG~~~i~l~~l~~~~-----------~~~W~~L  128 (129)
T 2bwq_A           92 TLWDQARVREEESEFLGEILIELETALLDD-----------EPHWYKL  128 (129)
T ss_dssp             EEEEC-------CEEEEEEEEEGGGCCCSS-----------CEEEEEC
T ss_pred             EEEECCcCcCcCCceeEEEEEEccccCCCc-----------CCccEEC
Confidence            99999988 4  899999999999987422           3668876

>2chd_A Rabphilin-3A, exophilin-1; C2 domain, C2A, calcium binding, synaptic EXOC metal-binding, protein transport, synapse, transport, zinc-; 1.92A {Rattus norvegicus} PDB: 2k3h_A

Probab=99.77  E-value=4.2e-18  Score=138.89  Aligned_cols=112  Identities=21%  Similarity=0.322  Sum_probs=90.8

Q ss_pred             ccceEEEEEEEecCCCCCCCCCCCCcEEEEEEecCCCCCCceEEeEecCCCCCCCeeeceEEEE-eccchhccCceEEEE
Q 021949            3 SYRALDLNLISAKHLKDVHLISKMDVYAVVSISGDHTIKKQKVKSHVDRSGGSNPTWNFPIKFT-FNQSLAQQNRLTLDF   81 (305)
Q Consensus         3 ~~~~L~V~vvsA~dL~~~~~~gk~dpYv~v~l~~~~~~~~~~~kT~v~k~~~~nP~Wne~f~f~-v~~~~~~~~~~~L~v   81 (305)
                      ..+.|+|+|++|++|...+.++++||||+|++.++.. ...++||+++++ +.||+|||+|.|. +......  ...|+|
T Consensus        27 ~~~~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~-~~~~~kT~v~~~-t~nP~wne~f~f~~~~~~~~~--~~~l~i  102 (142)
T 2chd_A           27 DNSNLQCTIIRAKGLKPMDSNGLADPYVKLHLLPGAS-KSNKLRTKTLRN-TRNPVWNETLQYHGITEEDMQ--RKTLRI  102 (142)
T ss_dssp             GGTEEEEEEEEEESCCCCCTTSCCCEEEEEEEESCCS-GGGEEECCCCCS-CSSCEEEEEEEEESCCHHHHH--HCEEEE
T ss_pred             CCCEEEEEEEEecCCCCCCCCCCCCCEEEEEEEcCCC-CcceeeCCcCCC-CCCCcCcCEEEEcccCHHHcc--CCEEEE
Confidence            4578999999999999998889999999999986432 247899999987 8999999999998 6543321  248999


Q ss_pred             EEEecCCC-CCcceeEEEEeCcccccccCCCCCCCCCcceEEEEEeec
Q 021949           82 KIKSDGLL-GDKTVGEVIVPIKELLDSSSSSSSGDAKSMKFVTYQVRS  128 (305)
Q Consensus        82 ~V~d~~~~-~d~~IG~~~vpL~~l~~~~~~~~~~~g~~~~~~~~~l~~  128 (305)
                      +|||++.+ +|++||++.|+|.+|....          ....|+.|.+
T Consensus       103 ~V~d~d~~~~d~~iG~~~i~l~~l~~~~----------~~~~~~~L~~  140 (142)
T 2chd_A          103 SVCDEDKFGHNEFIGETRFSLKKLKANQ----------RKNFNICLER  140 (142)
T ss_dssp             EEEEECTTSCEEEEEEEEEEGGGCCTTC----------CEEEEEECBC
T ss_pred             EEEECCCCCCCcEEEEEEEEHHHcCCCC----------ccEEEEeccc
Confidence            99999988 7899999999999987533          3466666654

>2r83_A Synaptotagmin-1; C2A-C2B, exocytosis, calcium, cell junction, cytoplasmic vesicle, glycoprotein, lipoprotein, membrane, metal-binding palmitate; 2.70A {Homo sapiens} SCOP: b.7.1.2

Probab=99.77  E-value=1.3e-17  Score=151.08  Aligned_cols=128  Identities=21%  Similarity=0.265  Sum_probs=105.9

Q ss_pred             ccceEEEEEEEecCCCCCCCCCCCCcEEEEEEecCCCCCCceEEeEecCCCCCCCeeeceEEEEeccchhccCceEEEEE
Q 021949            3 SYRALDLNLISAKHLKDVHLISKMDVYAVVSISGDHTIKKQKVKSHVDRSGGSNPTWNFPIKFTFNQSLAQQNRLTLDFK   82 (305)
Q Consensus         3 ~~~~L~V~vvsA~dL~~~~~~gk~dpYv~v~l~~~~~~~~~~~kT~v~k~~~~nP~Wne~f~f~v~~~~~~~~~~~L~v~   82 (305)
                      ..+.|+|+|++|++|...+..+++||||++++..+.   ..+++|+++++ +.||+|||+|.|.+....+  ....|+|+
T Consensus        17 ~~~~L~v~v~~a~~L~~~d~~~~~dpyv~v~~~~~~---~~~~~T~~~~~-~~nP~wne~f~f~v~~~~~--~~~~l~~~   90 (284)
T 2r83_A           17 QNNQLLVGIIQAAELPALDMGGTSDPYVKVFLLPDK---KKKFETKVHRK-TLNPVFNEQFTFKVPYSEL--AGKTLVMA   90 (284)
T ss_dssp             TTTEEEEEEEEEECCCCCSSSSSCCEEEEEEEETCT---TSCEECCCCCS-CSSCEEEEEEEECCCGGGC--TTCEEEEE
T ss_pred             CCCEEEEEEEEeeCCCCCCCCCCCCeEEEEEEEcCC---CceEeCCcccC-CCCCeeCceEEEEechHHh--CcCEEEEE
Confidence            457899999999999998888999999999998643   35889999887 7999999999999865432  23589999


Q ss_pred             EEecCCC-CCcceeEEEEeCcccccccCCCCCCCCCcceEEEEEeecCC---CCCccEEEEEEEEecc
Q 021949           83 IKSDGLL-GDKTVGEVIVPIKELLDSSSSSSSGDAKSMKFVTYQVRSSS---GKPKGELHFSYKFSEP  146 (305)
Q Consensus        83 V~d~~~~-~d~~IG~~~vpL~~l~~~~~~~~~~~g~~~~~~~~~l~~~~---g~~~G~l~lsl~~~~~  146 (305)
                      |||++.+ .|++||++.|+|.++....          ....|+.|....   ....|.|.|++++.+.
T Consensus        91 V~d~d~~~~~~~lG~~~i~l~~l~~~~----------~~~~w~~L~~~~~~~~~~~G~i~l~l~~~p~  148 (284)
T 2r83_A           91 VYDFDRFSKHDIIGEFKVPMNTVDFGH----------VTEEWRDLQSAEKEEQEKLGDICFSLRYVPT  148 (284)
T ss_dssp             EEECCSSSCCCEEEEEEEEGGGCCCSS----------CEEEEEECBCCSSCCCCCCCEEEEEEEEETT
T ss_pred             EEECCCCCCCceeEEEEEcchhcccCC----------cceeEEEeeccccccccccccEEEEEEecCc
Confidence            9999988 7899999999999987432          246789987643   3468999999998764

>2cjs_A UNC-13 homolog A, MUNC13-1; neurotransmitter transport, zinc finger, synapto phorbol-ester binding; 1.78A {Rattus norvegicus} SCOP: b.7.1.1

Probab=99.76  E-value=6e-18  Score=142.56  Aligned_cols=124  Identities=23%  Similarity=0.321  Sum_probs=92.0

Q ss_pred             ccceEEEEEEEecCCCCCCCCCCCCcEEEEEEecCCCCCCceEEeEecCCCCCCCeeeceEEEEeccchhccCceEEEEE
Q 021949            3 SYRALDLNLISAKHLKDVHLISKMDVYAVVSISGDHTIKKQKVKSHVDRSGGSNPTWNFPIKFTFNQSLAQQNRLTLDFK   82 (305)
Q Consensus         3 ~~~~L~V~vvsA~dL~~~~~~gk~dpYv~v~l~~~~~~~~~~~kT~v~k~~~~nP~Wne~f~f~v~~~~~~~~~~~L~v~   82 (305)
                      +...|.|+|++|++|.   .++++||||+|+  .      ++.||+++++++.||+|||+|.|.+....     ..|+|+
T Consensus        12 ~~~~L~V~V~~A~~l~---~~g~~DPYV~v~--~------~~~kt~~~~~~t~nP~WnE~f~f~v~~~~-----~~L~~~   75 (167)
T 2cjs_A           12 ILSLLCVGVKKAKFDG---AQEKFNTYVTLK--V------QNVESTTIAVRGSQPSWEQDFMFEINRLD-----LGLTVE   75 (167)
T ss_dssp             CCCEEEEEEEEEECSS---CGGGCEEEEEEE--E------TTEEEECCCEESSSCEEEEEEEEECCCTT-----SEEEEE
T ss_pred             ceEEEEEEEEEEECCC---CCCCCCeEEEEE--e------cceEEEEecCCCCCCCCCCEEEEEeeCCC-----CEEEEE
Confidence            4578999999999884   357899999999  2      24567776655899999999999997533     479999


Q ss_pred             EEecCCCCCcceeEEEEeCcccccccCCCCCCCCC-cceEEEEEeecCCCCCccE-------EEEEEEEeccC
Q 021949           83 IKSDGLLGDKTVGEVIVPIKELLDSSSSSSSGDAK-SMKFVTYQVRSSSGKPKGE-------LHFSYKFSEPT  147 (305)
Q Consensus        83 V~d~~~~~d~~IG~~~vpL~~l~~~~~~~~~~~g~-~~~~~~~~l~~~~g~~~G~-------l~lsl~~~~~~  147 (305)
                      |||++...|++||++.|+|.++....     .++. .+...+|++.+++++.+|+       |.++++|....
T Consensus        76 V~D~d~~~dd~iG~~~i~L~~l~~~~-----~~g~~~~~~~~~~~~~~~g~~~g~~~p~~~~lll~~~~e~~~  143 (167)
T 2cjs_A           76 VWNKGLIWDTMVGTVWIPLRTIRQSN-----EEGPGEWLTLDSQAIMADSEICGTKDPTFHRILLDAHFELPL  143 (167)
T ss_dssp             EEECCSSCCEEEEEEEEEGGGSCBCS-----SCCCCEEEEEEEEEEEETTEEEEEEEEEEEEEEEEEEEECCC
T ss_pred             EEECCCCCCceEEEEEEEHHHhcccC-----cCCcccceeeeeeeEcCCCCCCceEccccceEEEEEEeecCC
Confidence            99999338999999999999987533     1221 2445567766656655444       67777776543

>2enp_A B/K protein; C2 type 1,beta sandwich, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.76  E-value=3.4e-18  Score=140.37  Aligned_cols=98  Identities=21%  Similarity=0.254  Sum_probs=81.7

Q ss_pred             ccceEEEEEEEecCCCCC-------CCCCCCCcEEEEEEecCCCCCCceEEeEecCCCCCCCeeeceEEEEeccchhccC
Q 021949            3 SYRALDLNLISAKHLKDV-------HLISKMDVYAVVSISGDHTIKKQKVKSHVDRSGGSNPTWNFPIKFTFNQSLAQQN   75 (305)
Q Consensus         3 ~~~~L~V~vvsA~dL~~~-------~~~gk~dpYv~v~l~~~~~~~~~~~kT~v~k~~~~nP~Wne~f~f~v~~~~~~~~   75 (305)
                      ..+.|+|+|++|++|+..       +.++++||||+|++..+.   ..+++|+++++ +.||+|||+|.|.|....+.  
T Consensus        24 ~~~~L~V~v~~a~~L~~~~d~~g~~~~~~~~dpyv~v~l~~~~---~~~~kT~v~~~-t~nP~wne~f~f~v~~~~l~--   97 (147)
T 2enp_A           24 LHNHLTVRVIEARDLPPPISHDGSRQDMAHSNPYVKICLLPDQ---KNSKQTGVKRK-TQKPVFEERYTFEIPFLEAQ--   97 (147)
T ss_dssp             TTTEEEEEEEEEECCCCSCSSCCSSCTTCCCCCEEEEEEETCC---SSCEECCCCCS-CSSCCCCBCCEECCCHHHHH--
T ss_pred             CCCEEEEEEEEEeCCCCccccccccccCCCCCcEEEEEEEeCC---CcceEeecccC-CCCCeEeeeEEEEeChHHhc--
Confidence            457899999999999974       234689999999998643   35889999887 89999999999998754432  


Q ss_pred             ceEEEEEEEecCCC-CCcceeEEEEeCccccc
Q 021949           76 RLTLDFKIKSDGLL-GDKTVGEVIVPIKELLD  106 (305)
Q Consensus        76 ~~~L~v~V~d~~~~-~d~~IG~~~vpL~~l~~  106 (305)
                      ...|+|+|||++.+ +|++||++.|+|.++..
T Consensus        98 ~~~L~~~V~d~d~~~~~~~iG~~~i~l~~l~~  129 (147)
T 2enp_A           98 RRTLLLTVVDFDKFSRHCVIGKVSVPLCEVDL  129 (147)
T ss_dssp             HSEEEEEEECCSTTCCSCCCEEEEEETTTSCT
T ss_pred             cCEEEEEEEECCCCcCCcEEEEEEEechhcCC
Confidence            24899999999988 78899999999999964

>1rh8_A Piccolo protein; beta-sandwich, metal binding protein; NMR {Rattus norvegicus} SCOP: b.7.1.2

Probab=99.75  E-value=1.3e-18  Score=141.85  Aligned_cols=113  Identities=14%  Similarity=0.202  Sum_probs=90.8

Q ss_pred             cceEEEEEEEecCCCCCCCCCCCCcEEEEEEecCCCCC--------CceEEeEecCCCCCCCeeeceEEEE-eccchhcc
Q 021949            4 YRALDLNLISAKHLKDVHLISKMDVYAVVSISGDHTIK--------KQKVKSHVDRSGGSNPTWNFPIKFT-FNQSLAQQ   74 (305)
Q Consensus         4 ~~~L~V~vvsA~dL~~~~~~gk~dpYv~v~l~~~~~~~--------~~~~kT~v~k~~~~nP~Wne~f~f~-v~~~~~~~   74 (305)
                      .+.|+|+|++|++|...+.++++||||+|++.......        ..++||+++++ +.||+|||+|.|. +....+  
T Consensus        17 ~~~L~V~v~~a~~L~~~d~~g~~Dpyv~v~~~~~~~~~~~~~~~~~~~~~kT~v~~~-t~nP~wne~f~f~~v~~~~l--   93 (142)
T 1rh8_A           17 LGNLIIHILQARNLVPRDNNGYSDPFVKVYLLPGRGQVMVVQNASAEYKRRTKYVQK-SLNPEWNQTVIYKSISMEQL--   93 (142)
T ss_dssp             TTEEEEEEEEEESCCCCSSSSCSCCEEEEEETTSSCCCEECCCCCHHHHTTTTTTHH-HHSCEEEEEEEECSCCHHHH--
T ss_pred             CCEEEEEEEEecCCCCCCCCCCCCceEEEEEecCCCcccccccccccceeeccccCC-CCCCCCCCEEEECCcCHHHc--
Confidence            46899999999999999988999999999998743110        13688999887 8999999999997 654332  


Q ss_pred             CceEEEEEEEecCCC-CCcceeEEEEeCcccccccCCCCCCCCCcceEEEEEeecC
Q 021949           75 NRLTLDFKIKSDGLL-GDKTVGEVIVPIKELLDSSSSSSSGDAKSMKFVTYQVRSS  129 (305)
Q Consensus        75 ~~~~L~v~V~d~~~~-~d~~IG~~~vpL~~l~~~~~~~~~~~g~~~~~~~~~l~~~  129 (305)
                      ....|+|+|||++.+ +|++||++.|+|.++....          ....||.|...
T Consensus        94 ~~~~l~i~V~d~d~~~~~~~lG~~~i~l~~l~~~~----------~~~~W~~L~~~  139 (142)
T 1rh8_A           94 MKKTLEVTVWDYDRFSSNDFLGEVLIDLSSTSHLD----------NTPRWYPLKEQ  139 (142)
T ss_dssp             TTCEEEEEEEEECSSSCEEEEEEEEEETTSCGGGT----------TCCEEEECBCC
T ss_pred             cCCEEEEEEEECCCCCCCceEEEEEEeccccccCC----------CCCeEEECCcc
Confidence            235899999999988 7899999999999987533          23578998864

>2q3x_A Regulating synaptic membrane exocytosis protein 1; C2 domain dimer, neurotransmitter release, transport protein; HET: MSE; 1.73A {Rattus norvegicus}

Probab=99.75  E-value=6e-18  Score=142.78  Aligned_cols=110  Identities=20%  Similarity=0.176  Sum_probs=89.6

Q ss_pred             cceEEEEEEEecCCCCCCC-CCCCCcEEEEEEecCCCCCCceEEeEecCCCCCCCeeeceEEEEeccchhccCceEEEEE
Q 021949            4 YRALDLNLISAKHLKDVHL-ISKMDVYAVVSISGDHTIKKQKVKSHVDRSGGSNPTWNFPIKFTFNQSLAQQNRLTLDFK   82 (305)
Q Consensus         4 ~~~L~V~vvsA~dL~~~~~-~gk~dpYv~v~l~~~~~~~~~~~kT~v~k~~~~nP~Wne~f~f~v~~~~~~~~~~~L~v~   82 (305)
                      .+.|+|+|++|++|...+. ++++||||+|++..+.. ...++||+++++ +.||+|||+|.|.+....     ..|+|+
T Consensus        29 ~~~L~V~v~~a~~L~~~d~~~g~~DPyv~v~l~~~~~-~~~~~kT~v~~~-t~nP~wne~f~f~v~~~~-----~~L~~~  101 (171)
T 2q3x_A           29 KGQLEVEVIRARSLTQKPGSKSTPAPYVKVYLLENGA-CIAKKKTRIARK-TLDPLYQQSLVFDESPQG-----KVLQVI  101 (171)
T ss_dssp             TTEEEEEEEEEESCCCCC---CCCEEEEEEEEEETTE-EEEEEECCCCCS-CSSCEEEEEEECSSCCTT-----EEEEEE
T ss_pred             CCEEEEEEEEeeCCCCCCcCCCCCCceEEEEEECCCc-cccceeCccCCC-CCCCCCCcEEEEEecCCC-----CEEEEE
Confidence            4689999999999999885 68999999999986421 124889999887 899999999999985432     689999


Q ss_pred             EE-ecCCC-CCcceeEEEEeCcccccccCCCCCCCCCcceEEEEEeecCC
Q 021949           83 IK-SDGLL-GDKTVGEVIVPIKELLDSSSSSSSGDAKSMKFVTYQVRSSS  130 (305)
Q Consensus        83 V~-d~~~~-~d~~IG~~~vpL~~l~~~~~~~~~~~g~~~~~~~~~l~~~~  130 (305)
                      || |++.+ +|++||++.|+|.++....          ....||.|...+
T Consensus       102 V~~d~d~~~~d~~iG~~~i~l~~l~~~~----------~~~~W~~L~~~~  141 (171)
T 2q3x_A          102 VWGDYGRMDHKCFMGVAQILLEELDLSS----------MVIGWYKLFPPS  141 (171)
T ss_dssp             EEEECSTTCSSEEEEEEEECGGGSCTTS----------CEEEEEECBCGG
T ss_pred             EEEcCCCCCCCCEEEEEEEEHHHcccCC----------CcceeEECCCcc
Confidence            99 99888 7899999999999997422          247899998643

>1wfm_A Synaptotagmin XIII; C2 domain, exocytosis, neurotransmitter release, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: b.7.1.2

Probab=99.75  E-value=1.2e-17  Score=135.98  Aligned_cols=109  Identities=11%  Similarity=0.111  Sum_probs=87.3

Q ss_pred             ccceEEEEEEEecCCCCCCCCCCCCcEEEEEEecCCCCCCceEEeEecCCCCCCCeeeceEEEEeccchhccCceEEEEE
Q 021949            3 SYRALDLNLISAKHLKDVHLISKMDVYAVVSISGDHTIKKQKVKSHVDRSGGSNPTWNFPIKFTFNQSLAQQNRLTLDFK   82 (305)
Q Consensus         3 ~~~~L~V~vvsA~dL~~~~~~gk~dpYv~v~l~~~~~~~~~~~kT~v~k~~~~nP~Wne~f~f~v~~~~~~~~~~~L~v~   82 (305)
                      ..+.|+|+|++|++   .+.++++||||+|++..+..  ..+++|+++++ ++||+|||+|.|.+....+.  ...|.|+
T Consensus        24 ~~~~L~V~v~~a~~---~d~~g~sDPyv~v~l~~~~~--~~~~kT~v~~~-tlnP~wnE~f~f~v~~~~l~--~~~L~~~   95 (138)
T 1wfm_A           24 QKAELFVTRLEAVT---SNHDGGCDCYVQGSVANRTG--SVEAQTALKKR-QLHTTWEEGLVLPLAEEELP--TATLTLT   95 (138)
T ss_dssp             TTTEEEEEEEEEEC---CCCSSCCCEEEEEEEEETTE--EEEEECCCCCC-CSSEECSSCEEEECCTTSST--TCEEEEE
T ss_pred             CCCEEEEEEEEEEc---CCCCCCcceEEEEEEEcCCC--cccEecccCcC-CCCCcCCceEEEEecHHHcC--CCEEEEE
Confidence            35789999999994   45678999999999965321  35789999887 89999999999998765432  2589999


Q ss_pred             EEecCCC-CCcceeEEEEeCcccccccCCCCCCCCCcceEEEEEeecC
Q 021949           83 IKSDGLL-GDKTVGEVIVPIKELLDSSSSSSSGDAKSMKFVTYQVRSS  129 (305)
Q Consensus        83 V~d~~~~-~d~~IG~~~vpL~~l~~~~~~~~~~~g~~~~~~~~~l~~~  129 (305)
                      |||++.+ +|++||++.|+|.++....          ....|+.|...
T Consensus        96 V~d~d~~~~dd~lG~~~i~l~~l~~~~----------~~~~W~~L~~~  133 (138)
T 1wfm_A           96 LRTCDRFSRHSVAGELRLGLDGTSVPL----------GAAQWGELKTS  133 (138)
T ss_dssp             EEECCSSCTTSCSEEEEEESSSSSSCT----------TCCEEEECCCC
T ss_pred             EEECCCCCCCcEEEEEEEEcccccCcc----------cccceeeCcCC
Confidence            9999988 7899999999999986322          23678888864

>3n5a_A Synaptotagmin-7; calcium/phospholipid binding protein, protein transport; 1.44A {Mus musculus}

Probab=99.74  E-value=2e-17  Score=133.70  Aligned_cols=99  Identities=19%  Similarity=0.256  Sum_probs=84.0

Q ss_pred             ccceEEEEEEEecCCCCCCCCCCCCcEEEEEEecCCCCCCceEEeEecCCCCCCCeeeceEEEEeccchhccCceEEEEE
Q 021949            3 SYRALDLNLISAKHLKDVHLISKMDVYAVVSISGDHTIKKQKVKSHVDRSGGSNPTWNFPIKFTFNQSLAQQNRLTLDFK   82 (305)
Q Consensus         3 ~~~~L~V~vvsA~dL~~~~~~gk~dpYv~v~l~~~~~~~~~~~kT~v~k~~~~nP~Wne~f~f~v~~~~~~~~~~~L~v~   82 (305)
                      ..+.|+|+|++|++|...+.++++||||++++.++... ..+++|+++++ +.||+|||+|.|.+....+.  ...|.|+
T Consensus        14 ~~~~L~v~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~-~~~~kT~~~~~-t~nP~wne~f~f~v~~~~l~--~~~l~~~   89 (138)
T 3n5a_A           14 SANSIIVNIIKARNLKAMDIGGTSDPYVKVWLMYKDKR-VEKKKTVTKKR-NLNPIFNESFAFDIPTEKLR--ETTIIIT   89 (138)
T ss_dssp             TTTEEEEEEEEEESCCCCBTTTBCCEEEEEEEEETTEE-EEEEECCCCSS-CSSCEEEEEEEEECCGGGGG--GEEEEEE
T ss_pred             CCCeEEEEEEEeeCCCCcCCCCCcCeEEEEEEEeCCCc-cceEeCccccC-CCCCcCcceEEEECChhhcC--ceEEEEE
Confidence            45789999999999999988899999999999864321 35889999888 79999999999998765432  3589999


Q ss_pred             EEecCCC-CCcceeEEEEeCcccc
Q 021949           83 IKSDGLL-GDKTVGEVIVPIKELL  105 (305)
Q Consensus        83 V~d~~~~-~d~~IG~~~vpL~~l~  105 (305)
                      |||++.+ +|++||++.|+|.++.
T Consensus        90 V~d~~~~~~~~~lG~~~i~l~~~~  113 (138)
T 3n5a_A           90 VMDKDKLSRNDVIGKIYLSWKSGP  113 (138)
T ss_dssp             EEECCSSSCCEEEEEEEESSSSCH
T ss_pred             EEECCCCCCCcEEEEEEEccccCC
Confidence            9999988 7899999999999643

>2cm5_A Rabphilin-3A; protein transport, zinc-finger, Ca2+ binding, metal-binding, synaptic exocytosis, C2A-C2B linker fragment, C2B, zinc, synapse; 1.28A {Rattus norvegicus} SCOP: b.7.1.2 PDB: 2cm6_A 3rpb_A

Probab=99.74  E-value=4.2e-17  Score=136.66  Aligned_cols=99  Identities=17%  Similarity=0.205  Sum_probs=83.7

Q ss_pred             ccceEEEEEEEecCCCCCCCCCCCCcEEEEEEecCCCCCCceEEeEecCCCCCCCeeeceEEEEeccchhccCceEEEEE
Q 021949            3 SYRALDLNLISAKHLKDVHLISKMDVYAVVSISGDHTIKKQKVKSHVDRSGGSNPTWNFPIKFTFNQSLAQQNRLTLDFK   82 (305)
Q Consensus         3 ~~~~L~V~vvsA~dL~~~~~~gk~dpYv~v~l~~~~~~~~~~~kT~v~k~~~~nP~Wne~f~f~v~~~~~~~~~~~L~v~   82 (305)
                      ..+.|+|+|++|++|...+.++++||||+|++.++..+ ..+++|+++++ +.||+|||+|.|.+....+.  ...|.|+
T Consensus        35 ~~~~L~V~v~~a~~L~~~d~~g~~DPyv~v~l~~~~~~-~~~~kT~v~~~-t~nP~wne~f~f~v~~~~l~--~~~L~i~  110 (166)
T 2cm5_A           35 QQGGLIVGIIRCVHLAAMDANGYSDPFVKLWLKPDMGK-KAKHKTQIKKK-TLNPEFNEEFFYDIKHSDLA--KKSLDIS  110 (166)
T ss_dssp             TTTEEEEEEEEEESCCCCSTTSCCCEEEEEEEETC----CCEEECCCCCS-CSSCEEEEEEEEECCGGGGG--GCEEEEE
T ss_pred             CCCEEEEEEEEeECCCCccCCCCCCcEEEEEEECCCCc-cceEeCCcccC-CCCCcccceEEEEcchHhcC--CCEEEEE
Confidence            45789999999999999988899999999999864322 46899999987 89999999999999654332  2589999


Q ss_pred             EEecCCC-CCcceeEEEEeCcccc
Q 021949           83 IKSDGLL-GDKTVGEVIVPIKELL  105 (305)
Q Consensus        83 V~d~~~~-~d~~IG~~~vpL~~l~  105 (305)
                      |||++.+ +|++||++.|+|.++.
T Consensus       111 V~d~d~~~~~~~iG~~~i~l~~~~  134 (166)
T 2cm5_A          111 VWDYDIGKSNDYIGGCQLGISAKG  134 (166)
T ss_dssp             EEECCSSSCCEEEEEEEEETTCCH
T ss_pred             EEECCCCCCCcEEEeEEEecccCC
Confidence            9999988 7899999999999853

>1tjx_A Similar to synaptotagmini/P65; C2B domain, calcium binding, endocytosis-EX complex; HET: GOL; 1.04A {Rattus norvegicus} SCOP: b.7.1.2 PDB: 1tjm_A* 1uov_A 1uow_A 1k5w_A 2lha_A*

Probab=99.74  E-value=2.9e-17  Score=136.55  Aligned_cols=97  Identities=18%  Similarity=0.294  Sum_probs=82.2

Q ss_pred             ccceEEEEEEEecCCCCCCCCCCCCcEEEEEEecCCCCCCceEEeEecCCCCCCCeeeceEEEEeccchhccCceEEEEE
Q 021949            3 SYRALDLNLISAKHLKDVHLISKMDVYAVVSISGDHTIKKQKVKSHVDRSGGSNPTWNFPIKFTFNQSLAQQNRLTLDFK   82 (305)
Q Consensus         3 ~~~~L~V~vvsA~dL~~~~~~gk~dpYv~v~l~~~~~~~~~~~kT~v~k~~~~nP~Wne~f~f~v~~~~~~~~~~~L~v~   82 (305)
                      ..+.|+|+|++|++|...+.++++||||+|++..+.. ...+++|+++++ +.||+|||+|.|.|....+.  ...|.|+
T Consensus        23 ~~~~L~V~v~~a~~L~~~d~~g~~dpyv~v~l~~~~~-~~~~~kT~v~~~-t~nP~wne~f~f~v~~~~l~--~~~l~i~   98 (159)
T 1tjx_A           23 TAGKLTVVILEAKNLKKMDVGGLSDPYVKIHLMQNGK-RLKKKKTTIKKN-TLNPYYNESFSFEVPFEQIQ--KVQVVVT   98 (159)
T ss_dssp             TTTEEEEEEEEEESCCCCSTTSCCCEEEEEEEEETTE-EEEEEECCCCCS-CSSCEEEEEEEEECCGGGGG--GCEEEEE
T ss_pred             CCCEEEEEEEEeeCCCCccCCCCCCeEEEEEEEeCCc-eeceeeCceecC-CCCCcccceEEEEcCHHHhC--CcEEEEE
Confidence            3578999999999999999889999999999975421 135789999887 89999999999998665432  2589999


Q ss_pred             EEecCCC-CCcceeEEEEeCcc
Q 021949           83 IKSDGLL-GDKTVGEVIVPIKE  103 (305)
Q Consensus        83 V~d~~~~-~d~~IG~~~vpL~~  103 (305)
                      |||++.+ .|++||++.|+|.+
T Consensus        99 V~d~d~~~~~~~iG~~~i~l~~  120 (159)
T 1tjx_A           99 VLDYDKIGKNDAIGKVFVGYNS  120 (159)
T ss_dssp             EEECCSSSCCEEEEEEEEETTC
T ss_pred             EEECCCCCCCceEEEEEECCCC
Confidence            9999988 79999999999985

>1w15_A Synaptotagmin IV; metal binding protein, endocytosis/exocytosis neurotransmitter release, transmembrane; 1.93A {Rattus norvegicus} SCOP: b.7.1.2 PDB: 1w16_A

Probab=99.73  E-value=2.4e-17  Score=136.15  Aligned_cols=97  Identities=16%  Similarity=0.294  Sum_probs=76.9

Q ss_pred             ccceEEEEEEEecCCCCCCCCCCCCcEEEEEEecCCCCCCceEEeEecCCCCCCCeeeceEEEEeccchhccCceEEEEE
Q 021949            3 SYRALDLNLISAKHLKDVHLISKMDVYAVVSISGDHTIKKQKVKSHVDRSGGSNPTWNFPIKFTFNQSLAQQNRLTLDFK   82 (305)
Q Consensus         3 ~~~~L~V~vvsA~dL~~~~~~gk~dpYv~v~l~~~~~~~~~~~kT~v~k~~~~nP~Wne~f~f~v~~~~~~~~~~~L~v~   82 (305)
                      ..+.|+|+|++|++|...+.++++||||+|++..+.. ...++||+++++ +.||+|||+|.|.|....+  ....|+|+
T Consensus        28 ~~~~L~v~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~-~~~~~kT~v~~~-t~nP~wne~f~f~v~~~~l--~~~~l~v~  103 (153)
T 1w15_A           28 TTNTLTVVVLKARHLPKSDVSGLSDPYVKVNLYHAKK-RISKKKTHVKKC-TPNAVFNELFVFDIPCESL--EEISVEFL  103 (153)
T ss_dssp             TTTEEEEEEEEEESCC------CCCEEEEEEEEETTE-EEEEEECCCCCS-CSSEEEEEEEEEECCSSSS--TTEEEEEE
T ss_pred             CCCEEEEEEEEeECCCCcCCCCCCCeEEEEEEEeCCe-EeceEecCcccC-CCCCeecceEEEECCHHHh--CceEEEEE
Confidence            3578999999999999988889999999999975421 123789999988 8999999999999876543  23589999


Q ss_pred             EEecCCC-CCcceeEEEEeCcc
Q 021949           83 IKSDGLL-GDKTVGEVIVPIKE  103 (305)
Q Consensus        83 V~d~~~~-~d~~IG~~~vpL~~  103 (305)
                      |||++.+ .|++||++.|+|.+
T Consensus       104 V~d~d~~~~~~~lG~~~i~l~~  125 (153)
T 1w15_A          104 VLDSERGSRNEVIGRLVLGATA  125 (153)
T ss_dssp             EEECCTTSCCEEEEEEEESTTC
T ss_pred             EEeCCCCCCCcEEEEEEECCCC
Confidence            9999988 78999999999988

>3l9b_A Otoferlin; C2-domain, beta-sheets, cell membrane, synaptic V hearing, membrane, synapse, transmembrane, membrane protein; 1.95A {Rattus norvegicus}

Probab=99.71  E-value=8.3e-17  Score=130.52  Aligned_cols=119  Identities=16%  Similarity=0.248  Sum_probs=99.3

Q ss_pred             eEEEEEEEecCCCCCCCCCCCCcEEEEEEecCCCCCCceEEeEecCCCCCCCeeeceEEEEeccchhccCceEEEEEEEe
Q 021949            6 ALDLNLISAKHLKDVHLISKMDVYAVVSISGDHTIKKQKVKSHVDRSGGSNPTWNFPIKFTFNQSLAQQNRLTLDFKIKS   85 (305)
Q Consensus         6 ~L~V~vvsA~dL~~~~~~gk~dpYv~v~l~~~~~~~~~~~kT~v~k~~~~nP~Wne~f~f~v~~~~~~~~~~~L~v~V~d   85 (305)
                      .|+|+|.+|.+|+     ++.|+|+++.+.+      .++||+++++++.||+|||.|+|++....  +....|+|.|+|
T Consensus        22 sL~V~l~~a~~Lp-----g~~Dp~akv~FRg------~k~kTkvi~~~~~npvfnE~F~wpl~~~l--d~~e~L~v~V~d   88 (144)
T 3l9b_A           22 ALIVHLKTVSELR-----GRADRIAKVTFRG------QSFYSRVLENCEDVADFDETFRWPVASSI--DRNEVLEIQIFN   88 (144)
T ss_dssp             EEEEEEEEEESCC-----SCEEEEEEEEETT------EEEECCCEEEECSCEEEEEEEEEEESSCC--CTTCEEEEEEEE
T ss_pred             EEEEEEEEecCCC-----CCCCCeEEEEEec------cceeeEEeccCCCCceEcceEEecCCCCC--CCCCEEEEEEEE
Confidence            5899999999998     5789999999965      79999999855899999999999997633  345799999999


Q ss_pred             cCCC-CCcceeEEEEeCcccccccCCCCCCCCCcceEEEEEeecCCCCC-ccEEEEEEEEeccC
Q 021949           86 DGLL-GDKTVGEVIVPIKELLDSSSSSSSGDAKSMKFVTYQVRSSSGKP-KGELHFSYKFSEPT  147 (305)
Q Consensus        86 ~~~~-~d~~IG~~~vpL~~l~~~~~~~~~~~g~~~~~~~~~l~~~~g~~-~G~l~lsl~~~~~~  147 (305)
                      .+.+ +|++||++.|+|.+|....          ....+-.|.+.+.++ .++|.|+|+|.+..
T Consensus        89 ~~~v~~nrlIG~~~i~Lq~lv~~~----------~l~l~~~LvD~n~~~~~a~I~l~l~Y~pp~  142 (144)
T 3l9b_A           89 YSKVFSNKLIGTFRMVLQKVVEEN----------RVEVSDTLIDDNNAIIKTSLSMEVRYQAAD  142 (144)
T ss_dssp             ECTTSCCEEEEEEEEESHHHHHHS----------EEEEEEEEECTTSCEEEEEEEEEEEEEETT
T ss_pred             CccccCCCEEEEEEEEhHHhccCC----------eEEEeecccCCCCCccccEEEEEEEecCCC
Confidence            9888 8999999999999999644          134566777766654 58899999998753

>1dqv_A Synaptotagmin III; beta sandwich, calcium ION, C2 domain, endocytosis/exocytosis complex; 3.20A {Rattus rattus} SCOP: b.7.1.2 b.7.1.2 PDB: 3hn8_A

Probab=99.70  E-value=2.2e-16  Score=144.29  Aligned_cols=129  Identities=19%  Similarity=0.265  Sum_probs=100.5

Q ss_pred             ccceEEEEEEEecCCCCCCCCCCCCcEEEEEEecCCCCCCceEEeEecCCCCCCCeeeceEEEEeccchhccCceEEEEE
Q 021949            3 SYRALDLNLISAKHLKDVHLISKMDVYAVVSISGDHTIKKQKVKSHVDRSGGSNPTWNFPIKFTFNQSLAQQNRLTLDFK   82 (305)
Q Consensus         3 ~~~~L~V~vvsA~dL~~~~~~gk~dpYv~v~l~~~~~~~~~~~kT~v~k~~~~nP~Wne~f~f~v~~~~~~~~~~~L~v~   82 (305)
                      ..+.|.|+|++|++|...+.++++||||++++..+.   ..+++|+++++ +.||+|||+|.|.+....+.  ...|+|+
T Consensus        18 ~~~~L~v~v~~a~~L~~~d~~g~~dPyv~v~l~~~~---~~~~kT~v~~~-t~nP~wne~f~f~v~~~~l~--~~~L~~~   91 (296)
T 1dqv_A           18 GSDQLVVRILQALDLPAKDSNGFSDPYVKIYLLPDR---KKKFQTKVHRK-TLNPIFNETFQFSVPLAELA--QRKLHFS   91 (296)
T ss_dssp             SSCEEEEEEEEEECCCCCSTTSCCCEEEEEECTTST---TSCEECCCCCS-CSSCEEEEEEEEECCGGGGS--SCCCEEE
T ss_pred             CCCEEEEEEEEeECCCCcCCCCCcCeEEEEEEEcCC---CeeEeCCccCC-CCCCcEeeEEEEEecHHHhc--CCEEEEE
Confidence            457899999999999999888999999999996432   36889999887 79999999999998654432  2489999


Q ss_pred             EEecCCC-CCcceeEEEEe-CcccccccCCCCCCCCCcceEEEEEeecC--CCCCccEEEEEEEEecc
Q 021949           83 IKSDGLL-GDKTVGEVIVP-IKELLDSSSSSSSGDAKSMKFVTYQVRSS--SGKPKGELHFSYKFSEP  146 (305)
Q Consensus        83 V~d~~~~-~d~~IG~~~vp-L~~l~~~~~~~~~~~g~~~~~~~~~l~~~--~g~~~G~l~lsl~~~~~  146 (305)
                      |||++.+ +|++||++.|+ |.++....      .   ....|+.|...  .....|+|.|++++.+.
T Consensus        92 V~d~d~~~~~~~iG~~~i~~l~~~~~~~------~---~~~~w~~L~~~~~~~~~~G~i~vsl~y~~~  150 (296)
T 1dqv_A           92 VYDFDRFSRHDLIGQVVLDNLLELAEQP------P---DRPLWRDILEGGSEKADLGELNFSLCYLPT  150 (296)
T ss_dssp             EEECCSSSCCCEEEEEECCCTTGGGSSC------S---SCCCCEECBCCSSCCSCCCEEEEEEEEETT
T ss_pred             EEEcCCCCCCceEEEEEeccccccccCC------c---cceeeeccccccccccccceEEEEEEeccc
Confidence            9999988 78999999996 55554322      1   12446666643  33467999999998764

>1djx_A PLC-D1, phosphoinositide-specific phospholipase C, isozyme delta1; phosphoric diester hydrolase, hydrolase, lipid degradation, transducer; HET: I3P; 2.30A {Rattus norvegicus} SCOP: a.39.1.7 b.7.1.1 c.1.18.1 PDB: 1djg_A 1dji_A 1djh_A* 1djw_A* 1djy_A* 1djz_A* 2isd_A 1qas_A 1qat_A

Probab=99.68  E-value=5.5e-16  Score=155.21  Aligned_cols=124  Identities=19%  Similarity=0.300  Sum_probs=103.3

Q ss_pred             cceEEEEEEEecCCCCCCC--CCCCCcEEEEEEecCCCCCCceEEeEecCCCCCCCeeeceEEEEeccchhccCceEEEE
Q 021949            4 YRALDLNLISAKHLKDVHL--ISKMDVYAVVSISGDHTIKKQKVKSHVDRSGGSNPTWNFPIKFTFNQSLAQQNRLTLDF   81 (305)
Q Consensus         4 ~~~L~V~vvsA~dL~~~~~--~gk~dpYv~v~l~~~~~~~~~~~kT~v~k~~~~nP~Wne~f~f~v~~~~~~~~~~~L~v   81 (305)
                      ..+|+|+|++|++|...+.  .+++||||+|++.+.+.+ ..+.||+++++++.||+|||+|.|.|....+    ..|+|
T Consensus       496 ~~~L~V~Vi~A~~L~~~d~~~~~~~DPYV~V~l~g~~~d-~~~~kTkvi~~ng~NP~WnE~f~F~v~~~el----~~L~~  570 (624)
T 1djx_A          496 PERLRVRIISGQQLPKVNKNKNSIVDPKVIVEIHGVGRD-TGSRQTAVITNNGFNPRWDMEFEFEVTVPDL----ALVRF  570 (624)
T ss_dssp             CEEEEEEEEEEESCCCCSSCSSSCCCEEEEEEEESSGGG-CEEEECCCCTTCSSSCEEEEEEEEEESCGGG----CEEEE
T ss_pred             ceEEEEEEEEcCCCCcccccccCCCCcEEEEEEecCCCC-cceeecccccCCCCCCccCceEEEEEecCCC----CEEEE
Confidence            4689999999999998773  688999999999764221 3688999999866999999999999976543    48999


Q ss_pred             EEEecCCC-CCcceeEEEEeCcccccccCCCCCCCCCcceEEEEEeecCCCCC--ccEEEEEEEEec
Q 021949           82 KIKSDGLL-GDKTVGEVIVPIKELLDSSSSSSSGDAKSMKFVTYQVRSSSGKP--KGELHFSYKFSE  145 (305)
Q Consensus        82 ~V~d~~~~-~d~~IG~~~vpL~~l~~~~~~~~~~~g~~~~~~~~~l~~~~g~~--~G~l~lsl~~~~  145 (305)
                      +|||++.+ +|++||++.|+|.+|.. +            .+|++|++..|+.  .++|.|.|+|.+
T Consensus       571 ~V~D~D~~~~dd~iG~~~ipl~~L~~-G------------~r~v~L~d~~g~~~~~~~L~v~i~~~~  624 (624)
T 1djx_A          571 MVEDYDSSSKNDFIGQSTIPWNSLKQ-G------------YRHVHLLSKNGDQHPSATLFVKISIQD  624 (624)
T ss_dssp             EEEECCSSSCCEEEEEEEEEGGGBCC-E------------EEEEEEECTTSCEEEEEEEEEEEEEEC
T ss_pred             EEEEcCCCCCCceeEEEEEEHHHcCC-C------------cEEEeCCCCCcCCCCceEEEEEEEEEC
Confidence            99999988 89999999999999873 2            4588999887774  588999988863

>3jzy_A Intersectin 2; C2 domain, structural genomics consortium (SGC), endocytosis; 1.56A {Homo sapiens} PDB: 3qbv_B* 1ki1_B

Probab=99.67  E-value=5.1e-16  Score=151.66  Aligned_cols=122  Identities=18%  Similarity=0.306  Sum_probs=99.3

Q ss_pred             ccceEEEEEEEecCCCCCCCCCCCCcEEEEEEecCCCCCCceEEeEecCCCCCCCeeeceEEEEeccchhccCceEEEEE
Q 021949            3 SYRALDLNLISAKHLKDVHLISKMDVYAVVSISGDHTIKKQKVKSHVDRSGGSNPTWNFPIKFTFNQSLAQQNRLTLDFK   82 (305)
Q Consensus         3 ~~~~L~V~vvsA~dL~~~~~~gk~dpYv~v~l~~~~~~~~~~~kT~v~k~~~~nP~Wne~f~f~v~~~~~~~~~~~L~v~   82 (305)
                      ..++|+|+|++|++|+..+.++++||||+|++.+      .+++|+++++ +.||+|||+|.|.+.....    ..|+|+
T Consensus       385 ~~~~l~v~v~~a~~L~~~d~~~~sdpyv~v~~~~------~~~~T~~~~~-t~nP~w~e~f~f~~~~~~~----~~l~~~  453 (510)
T 3jzy_A          385 GIGRLMVHVIEATELKACKPNGKSNPYCEISMGS------QSYTTRTIQD-TLNPKWNFNCQFFIKDLYQ----DVLCLT  453 (510)
T ss_dssp             -CEEEEEEEEEEESCCCCSTTSCCCEEEEEEETT------EEEECCCCSS-CSSCEEEEEEEEEESCTTT----CEEEEE
T ss_pred             CCceEEEEeceeecCCCCCCCCCCCeEEEEEECC------eeccCCccCC-CCCCccCceEEEEecCCCC----CEEEEE
Confidence            3468999999999999999899999999999954      6899999988 7999999999999965432    579999


Q ss_pred             EEecCCC-CCcceeEEEEeCcccccccCCCCCCCCCcceEEEEEeecCCCCCccEEEEEEEEe
Q 021949           83 IKSDGLL-GDKTVGEVIVPIKELLDSSSSSSSGDAKSMKFVTYQVRSSSGKPKGELHFSYKFS  144 (305)
Q Consensus        83 V~d~~~~-~d~~IG~~~vpL~~l~~~~~~~~~~~g~~~~~~~~~l~~~~g~~~G~l~lsl~~~  144 (305)
                      |||++.+ .|++||++.|+|.++....    ...  .....|+.+.   ++..|+|+|++++.
T Consensus       454 v~d~d~~~~~d~lG~~~~~l~~l~~~~----~~~--~~~~~~~~l~---~~~~G~i~l~~~l~  507 (510)
T 3jzy_A          454 LFDRDQFSPDDFLGRTEIPVAKIRTEQ----ESK--GPMTRRLLLH---EVPTGEVWVRFDLQ  507 (510)
T ss_dssp             EEECCSSSSCCEEEEEEEEHHHHHHHH----HHH--CSCCEEEECB---SSSSCEEEEEEEEE
T ss_pred             EEeCCCCCCCCceEEEEEEHHHhcccc----CCC--CceeeeecCC---CCCCceEEEEEEEE
Confidence            9999988 7899999999999997533    111  0135577765   34779999988874

>3nsj_A Perforin-1; pore forming protein, immune system; HET: NAG; 2.75A {Mus musculus}

Probab=99.65  E-value=1.2e-15  Score=150.07  Aligned_cols=111  Identities=21%  Similarity=0.267  Sum_probs=91.0

Q ss_pred             cceEEEEEEEecCCCCCCCCCCCCcEEEEEEecCCCCCCceEEeEecCCCCCCCeeeceEEEEeccchhccCceEEEEEE
Q 021949            4 YRALDLNLISAKHLKDVHLISKMDVYAVVSISGDHTIKKQKVKSHVDRSGGSNPTWNFPIKFTFNQSLAQQNRLTLDFKI   83 (305)
Q Consensus         4 ~~~L~V~vvsA~dL~~~~~~gk~dpYv~v~l~~~~~~~~~~~kT~v~k~~~~nP~Wne~f~f~v~~~~~~~~~~~L~v~V   83 (305)
                      .+.|+|+|++|++|+. +.++++||||+|++.+      .++||+|+++ ++||+|||+|.|.+....   ....|+|+|
T Consensus       393 ~~~L~V~V~~A~~L~~-D~~g~sDPYV~v~l~~------~~~kTkvik~-tlNP~Wne~f~f~~~~~~---~~~~L~~~V  461 (540)
T 3nsj_A          393 LAHLVVSNFRAEHLWG-DYTTATDAYLKVFFGG------QEFRTGVVWN-NNNPRWTDKMDFENVLLS---TGGPLRVQV  461 (540)
T ss_dssp             EEEEEEEEEEEESCCC-SSCSCCCEEEEEEETT------EEEECCCBCS-CSSCBCCCCEEEEEEETT---TCCCEEEEE
T ss_pred             ccEEEEEEEEccCCCc-ccCCCcCeEEEEEECC------EeeeeeeecC-CCCCCCCeEEEEEEecCC---CCCEEEEEE
Confidence            4679999999999998 8899999999999975      5799999998 799999999999864321   125799999


Q ss_pred             EecCCC-CCcceeEEEEeCcccccccCCCCCCCCCcceEEEEEeecCCCCCccEEEEEEEEec
Q 021949           84 KSDGLL-GDKTVGEVIVPIKELLDSSSSSSSGDAKSMKFVTYQVRSSSGKPKGELHFSYKFSE  145 (305)
Q Consensus        84 ~d~~~~-~d~~IG~~~vpL~~l~~~~~~~~~~~g~~~~~~~~~l~~~~g~~~G~l~lsl~~~~  145 (305)
                      ||++.+ .|||||++.++|..    .          ....|+.|.      +|+|+|++++.=
T Consensus       462 ~D~D~~~~dD~LG~~~~~L~~----g----------~~~~~~~l~------~G~l~~~~~~~c  504 (540)
T 3nsj_A          462 WDADYGWDDDLLGSCDRSPHS----G----------FHEVTCELN------HGRVKFSYHAKC  504 (540)
T ss_dssp             EECCSSSCCEEEEEEEECCCS----E----------EEEEEEECS------SSEEEEEEEEEE
T ss_pred             EECCCCCCCCEEEEEEEEeeC----C----------cEEEEEEcC------CeEEEEEEEEEE
Confidence            999988 78999999998873    2          134566543      689999988763

>2r83_A Synaptotagmin-1; C2A-C2B, exocytosis, calcium, cell junction, cytoplasmic vesicle, glycoprotein, lipoprotein, membrane, metal-binding palmitate; 2.70A {Homo sapiens} SCOP: b.7.1.2

Probab=99.58  E-value=1.7e-14  Score=130.46  Aligned_cols=97  Identities=18%  Similarity=0.284  Sum_probs=81.8

Q ss_pred             cceEEEEEEEecCCCCCCCCCCCCcEEEEEEecCCCCCCceEEeEecCCCCCCCeeeceEEEEeccchhccCceEEEEEE
Q 021949            4 YRALDLNLISAKHLKDVHLISKMDVYAVVSISGDHTIKKQKVKSHVDRSGGSNPTWNFPIKFTFNQSLAQQNRLTLDFKI   83 (305)
Q Consensus         4 ~~~L~V~vvsA~dL~~~~~~gk~dpYv~v~l~~~~~~~~~~~kT~v~k~~~~nP~Wne~f~f~v~~~~~~~~~~~L~v~V   83 (305)
                      .+.|.|+|++|++|...+.++++||||++++..+.. ...+++|+++++ +.||+|||+|.|.+....+.  ...|.|+|
T Consensus       149 ~~~l~v~v~~a~~L~~~d~~~~~dpyv~v~~~~~~~-~~~~~kT~v~~~-t~nP~wne~f~f~v~~~~l~--~~~l~i~V  224 (284)
T 2r83_A          149 AGKLTVVILEAKNLKKMDVGGLSDPYVKIHLMQNGK-RLKKKKTTIKKN-TLNPYYNESFSFEVPFEQIQ--KVQVVVTV  224 (284)
T ss_dssp             TTEEEEEEEEEESCCCCSTTSCCCEEEEEEEEETTE-EEEEEECCCCCS-CSSCEEEEEEEEECCTTTGG--GEEEEEEE
T ss_pred             CCceEEEEEEeECCCCcCCCCCcCeEEEEEEEeCCc-EeeeeccceecC-CCCCEEceeEEEeCCHHHhC--ceEEEEEE
Confidence            468999999999999998889999999999975321 135789999887 89999999999999765432  25899999


Q ss_pred             EecCCC-CCcceeEEEEeCccc
Q 021949           84 KSDGLL-GDKTVGEVIVPIKEL  104 (305)
Q Consensus        84 ~d~~~~-~d~~IG~~~vpL~~l  104 (305)
                      ||++.+ +|++||++.|+|..+
T Consensus       225 ~d~d~~~~~~~iG~~~i~l~~~  246 (284)
T 2r83_A          225 LDYDKIGKNDAIGKVFVGYNST  246 (284)
T ss_dssp             EECCSSSCCCEEEEEEEETTCC
T ss_pred             EeCCCCCCCcEEEEEEECCCCC
Confidence            999988 789999999999763

>1cjy_A CPLA2, protein (cytosolic phospholipase A2); lipid-binding, hydrolase; HET: MES; 2.50A {Homo sapiens} SCOP: b.7.1.1 c.19.1.2 PDB: 1bci_A

Probab=99.53  E-value=1.4e-14  Score=146.85  Aligned_cols=108  Identities=15%  Similarity=0.269  Sum_probs=90.1

Q ss_pred             ccceEEEEEEEecCCCC---CCCCCCCCcEEEEEEecCCCCCCceEEeEecCCCCCCCeeeceEEEEeccchhccCceEE
Q 021949            3 SYRALDLNLISAKHLKD---VHLISKMDVYAVVSISGDHTIKKQKVKSHVDRSGGSNPTWNFPIKFTFNQSLAQQNRLTL   79 (305)
Q Consensus         3 ~~~~L~V~vvsA~dL~~---~~~~gk~dpYv~v~l~~~~~~~~~~~kT~v~k~~~~nP~Wne~f~f~v~~~~~~~~~~~L   79 (305)
                      ..++|+|+|++|++|+.   .+.++++||||+|++.+..   ..++||+++++ +.||+|||+|.|.+....    ...|
T Consensus        16 ~~g~L~V~Vi~A~nL~~~~~~D~~g~sDPYV~V~l~~~~---~~k~kTkvik~-tlNPvWNEtF~F~v~~~~----~~~L   87 (749)
T 1cjy_A           16 YSHKFTVVVLRATKVTKGAFGDMLDTPDPYVELFISTTP---DSRKRTRHFNN-DINPVWNETFEFILDPNQ----ENVL   87 (749)
T ss_dssp             CCEEEEEEEEEEECCCSCHHHHHHCCCCEEEEEECTTST---TCCEECCCCTT-CSSCEEEEEEEEEECTTS----CCBC
T ss_pred             CccEEEEEEEEEECCCCccccCCCCCcCeEEEEEEecCC---CCeEecceEcC-CCCCeeeeEEEEEecCCC----CCEE
Confidence            35789999999999998   6777899999999998643   36899999987 899999999999997642    2489


Q ss_pred             EEEEEecCCCCCcceeEEEEeCcccccccCCCCCCCCCcceEEEEEeec
Q 021949           80 DFKIKSDGLLGDKTVGEVIVPIKELLDSSSSSSSGDAKSMKFVTYQVRS  128 (305)
Q Consensus        80 ~v~V~d~~~~~d~~IG~~~vpL~~l~~~~~~~~~~~g~~~~~~~~~l~~  128 (305)
                      +|+|||++.++|++||++.|+|.+|....          ....|+.|..
T Consensus        88 ~~~V~D~D~~~ddfIG~v~I~L~~L~~g~----------~~~~w~~L~~  126 (749)
T 1cjy_A           88 EITLMDANYVMDETLGTATFTVSSMKVGE----------KKEVPFIFNQ  126 (749)
T ss_dssp             EEEEEECCSSSCEEEEEECCBSTTSCTTC----------CCCEEEEETT
T ss_pred             EEEEEECCCCCCceeEEEEEEHHHcCCCC----------ceEEEEecCC
Confidence            99999999878899999999999996432          2356888863

>1dqv_A Synaptotagmin III; beta sandwich, calcium ION, C2 domain, endocytosis/exocytosis complex; 3.20A {Rattus rattus} SCOP: b.7.1.2 b.7.1.2 PDB: 3hn8_A

Probab=99.51  E-value=1e-14  Score=133.18  Aligned_cols=98  Identities=19%  Similarity=0.270  Sum_probs=83.3

Q ss_pred             cceEEEEEEEecCCCCCCCCCCCCcEEEEEEecCCCCCCceEEeEecCCCCCCCeeeceEEEEeccchhccCceEEEEEE
Q 021949            4 YRALDLNLISAKHLKDVHLISKMDVYAVVSISGDHTIKKQKVKSHVDRSGGSNPTWNFPIKFTFNQSLAQQNRLTLDFKI   83 (305)
Q Consensus         4 ~~~L~V~vvsA~dL~~~~~~gk~dpYv~v~l~~~~~~~~~~~kT~v~k~~~~nP~Wne~f~f~v~~~~~~~~~~~L~v~V   83 (305)
                      .+.|+|+|++|++|+..+.++++||||++++..+. +...++||+++++ +.||+|||+|.|.|....+.  ...|+|+|
T Consensus       151 ~~~l~v~v~~a~~L~~~d~~g~~Dpyv~v~l~~~~-~~~~~~kT~v~~~-t~nP~wne~f~f~v~~~~l~--~~~L~i~V  226 (296)
T 1dqv_A          151 AGLLTVTIIKASNLKAMDLTGFSDPYVKASLISEG-RRLKKRKTSIKKN-TLNPTYNEALVFDVAPESVE--NVGLSIAV  226 (296)
T ss_dssp             TTEEEEEEEEEESCCCCSSSSCCCEEEEECCCTTC-CTTSCEECCCCCS-CSSCEEEECCCCCCCSGGGG--SCCCCCEE
T ss_pred             cceeEEEEEEeecCCccCCCCCCCcEEEEEEEeCC-cCccceecceecC-CCCCeECceEEEEcCHHHcc--CcEEEEEE
Confidence            57899999999999999888999999999997532 1246889999887 89999999999998765442  24799999


Q ss_pred             EecCCC-CCcceeEEEEeCcccc
Q 021949           84 KSDGLL-GDKTVGEVIVPIKELL  105 (305)
Q Consensus        84 ~d~~~~-~d~~IG~~~vpL~~l~  105 (305)
                      ||++.+ +|++||++.|+|.++.
T Consensus       227 ~d~d~~~~~~~iG~~~i~l~~~~  249 (296)
T 1dqv_A          227 VDYDCIGHNEVIGVCRVGPEAAD  249 (296)
T ss_dssp             EECCSSSCCEEEEECCCSSCTTC
T ss_pred             EeCCCCCCCceEEEEEECCccCC
Confidence            999988 7899999999998764

>3ohm_B 1-phosphatidylinositol-4,5-bisphosphate phosphodi beta-3; PH domain, EF hand, TIM barrel, C2 domain, GTPase, lipase, C binding, GTP binding; HET: GDP; 2.70A {Homo sapiens}

Probab=99.50  E-value=1.6e-13  Score=141.16  Aligned_cols=119  Identities=23%  Similarity=0.382  Sum_probs=96.2

Q ss_pred             ceEEEEEEEecCCCCCCCCCCCCcEEEEEEecCCCCCCceEEeEecCCCCCCCeeec-eEEEE-eccchhccCceEEEEE
Q 021949            5 RALDLNLISAKHLKDVHLISKMDVYAVVSISGDHTIKKQKVKSHVDRSGGSNPTWNF-PIKFT-FNQSLAQQNRLTLDFK   82 (305)
Q Consensus         5 ~~L~V~vvsA~dL~~~~~~gk~dpYv~v~l~~~~~~~~~~~kT~v~k~~~~nP~Wne-~f~f~-v~~~~~~~~~~~L~v~   82 (305)
                      .+|+|+|++|++|...    ++||||+|.|.+.+.....++||+++++++.||+||| +|.|. |....+    ..|+|+
T Consensus       725 ~~L~V~Visaq~L~~~----~~DPYV~V~l~g~p~D~~~k~kTkvi~~NglNPvWnEe~F~F~~V~~pel----a~Lrf~  796 (885)
T 3ohm_B          725 NALRVKVISGQFLSDR----KVGIYVEVDMFGLPVDTRRKYRTRTSQGNSFNPVWDEEPFDFPKVVLPTL----ASLRIA  796 (885)
T ss_dssp             EEEEEEEEEEESCCSS----CCCEEEEEEEESSTTTCBCCCCCCCCSSCSSSCBCCCCCEEEEEESCGGG----CEEEEE
T ss_pred             eEEEEEEEEeccCccc----CCCcEEEEEEeCCCcccccceeeEEeeCCCcCCeeccceeEEeeEEcCCc----CEEEEE
Confidence            4799999999999753    5899999999864322124689999988789999999 69998 654443    479999


Q ss_pred             EEecCCCCCcceeEEEEeCcccccccCCCCCCCCCcceEEEEEeecCCCCC--ccEEEEEEEEeccC
Q 021949           83 IKSDGLLGDKTVGEVIVPIKELLDSSSSSSSGDAKSMKFVTYQVRSSSGKP--KGELHFSYKFSEPT  147 (305)
Q Consensus        83 V~d~~~~~d~~IG~~~vpL~~l~~~~~~~~~~~g~~~~~~~~~l~~~~g~~--~G~l~lsl~~~~~~  147 (305)
                      |||++   |+|||++.|+|.+|.. +            .+++.|++..|+.  .++|.|.|++.+-.
T Consensus       797 V~D~d---ddfiG~~~lpL~~L~~-G------------yR~vpL~~~~g~~l~~atLfv~i~~~~~~  847 (885)
T 3ohm_B          797 AFEEG---GKFVGHRILPVSAIRS-G------------YHYVCLRNEANQPLCLPALLIYTEASDYI  847 (885)
T ss_dssp             EEETT---TEEEEEEEEETTTCCC-E------------EEEEEEECTTSCEEEEEEEEEEEEEEECC
T ss_pred             EEcCC---ccEEeeEEEEHHHcCC-C------------ceEEEecCCCCCccCceEEEEEEEEEecC
Confidence            99986   8899999999999873 2            4568899887774  79999999998754

>2zkm_X 1-phosphatidylinositol-4,5-bisphosphate phosphodiesterase beta-2; phospholipase C, phosphoinositide phospholipase, PLC-beta-2, calcium, coiled coil; 1.62A {Homo sapiens} SCOP: a.39.1.7 b.7.1.1 b.55.1.1 c.1.18.1 PDB: 2fju_B

Probab=99.49  E-value=3e-13  Score=138.66  Aligned_cols=117  Identities=21%  Similarity=0.354  Sum_probs=93.5

Q ss_pred             cceEEEEEEEecCCCCCCCCCCCCcEEEEEEecCCCCCCceEEeE-ecCCCCCCCeeec-eEEE-EeccchhccCceEEE
Q 021949            4 YRALDLNLISAKHLKDVHLISKMDVYAVVSISGDHTIKKQKVKSH-VDRSGGSNPTWNF-PIKF-TFNQSLAQQNRLTLD   80 (305)
Q Consensus         4 ~~~L~V~vvsA~dL~~~~~~gk~dpYv~v~l~~~~~~~~~~~kT~-v~k~~~~nP~Wne-~f~f-~v~~~~~~~~~~~L~   80 (305)
                      .++|.|+|++|++|.+    .++||||+|.+.+.+....+++||+ ++++++.||+||| +|.| .|....+    ..|.
T Consensus       677 ~~~L~V~Visa~~L~~----~~~DPYV~V~l~g~p~d~~~k~kTk~vv~~n~~NPvWnEe~f~F~~v~~~el----~~Lr  748 (799)
T 2zkm_X          677 ATTLSITVISGQFLSE----RSVRTYVEVELFGLPGDPKRRYRTKLSPSTNSINPVWKEEPFVFEKILMPEL----ASLR  748 (799)
T ss_dssp             CEEEEEEEEEEESCCS----SCCCEEEEEEEECCTTSCCCCEECCCCSSSCCSSCBCCCCCEEEEEESSGGG----CEEE
T ss_pred             eeeEEEEEEeccccCc----cCCCcEEEEEEEecCCCcccceeecccccCCCCCCeeecceEEEEEEccCCc----cEEE
Confidence            3579999999999985    3689999999976432223478999 8887789999999 6999 7865543    4899


Q ss_pred             EEEEecCCCCCcceeEEEEeCcccccccCCCCCCCCCcceEEEEEeecCCCC--CccEEEEEEEEe
Q 021949           81 FKIKSDGLLGDKTVGEVIVPIKELLDSSSSSSSGDAKSMKFVTYQVRSSSGK--PKGELHFSYKFS  144 (305)
Q Consensus        81 v~V~d~~~~~d~~IG~~~vpL~~l~~~~~~~~~~~g~~~~~~~~~l~~~~g~--~~G~l~lsl~~~  144 (305)
                      |+|||++   +++||++.|+|.+|.. +            .++++|++..|.  ..++|.|.|++.
T Consensus       749 ~~V~D~d---~d~iG~~~ipl~~L~~-G------------~r~v~L~~~~g~~~~~~~Lfv~i~~~  798 (799)
T 2zkm_X          749 VAVMEEG---NKFLGHRIIPINALNS-G------------YHHLCLHSESNMPLTMPALFIFLEMK  798 (799)
T ss_dssp             EEEEETT---TEEEEEEEEEGGGBCC-E------------EEEEEEECTTCCEEEEEEEEEEEEEE
T ss_pred             EEEEEeC---CCccceEeeehhhcCC-C------------cEEEeccCCCCCCCCceEEEEEEEEE
Confidence            9999986   8899999999999873 2            557888887666  457888888875

>3bxj_A RAS GTPase-activating protein syngap; GTPase activation, membrane, phosphoprotein, SH3-binding, signaling protein; 3.00A {Rattus norvegicus}

Probab=99.49  E-value=2.5e-15  Score=146.48  Aligned_cols=118  Identities=16%  Similarity=0.220  Sum_probs=19.4

Q ss_pred             cceEEEEEEEecCCCCCCCCCCCCcEEEEEEecCCCCCCceEEeEecCCCC---CCCeeeceEEEEeccchhccCceEEE
Q 021949            4 YRALDLNLISAKHLKDVHLISKMDVYAVVSISGDHTIKKQKVKSHVDRSGG---SNPTWNFPIKFTFNQSLAQQNRLTLD   80 (305)
Q Consensus         4 ~~~L~V~vvsA~dL~~~~~~gk~dpYv~v~l~~~~~~~~~~~kT~v~k~~~---~nP~Wne~f~f~v~~~~~~~~~~~L~   80 (305)
                      .++|+|+|++|++|...+     ||||++++.+     ..+.||+++++ +   .||+|||+|.|.+....     ..|.
T Consensus        10 ~~~L~V~VieAk~L~~~d-----dpYv~v~l~~-----~~~~kT~v~~k-t~~glnP~WnE~F~f~~~~~~-----~~L~   73 (483)
T 3bxj_A           10 DNVLKLWIIEARELPPKK-----RYYCELCLDD-----MLYARTTSKPR-SASGDTVFWGEHFEFNNLPAV-----RALR   73 (483)
T ss_dssp             EECC--------------------------------------------------------CCEECC--------------
T ss_pred             ccEEEEEEEEcCCcCCCC-----CCeEEEEECC-----eEEeeeeEEeC-CCCCCCCccccEEEEecCCCc-----cEEE
Confidence            367999999999998765     9999999976     24678999876 6   99999999999864332     4899


Q ss_pred             EEEEec-C---CC-CCcceeEEEEeCcccccccCCCCCCCCCcceEEEEEeecCCC------------------------
Q 021949           81 FKIKSD-G---LL-GDKTVGEVIVPIKELLDSSSSSSSGDAKSMKFVTYQVRSSSG------------------------  131 (305)
Q Consensus        81 v~V~d~-~---~~-~d~~IG~~~vpL~~l~~~~~~~~~~~g~~~~~~~~~l~~~~g------------------------  131 (305)
                      |+|||+ +   .+ +|++||++.|+|.++....          ....||.|..++.                        
T Consensus        74 v~V~d~~d~~~~~~~d~~lG~v~i~l~~l~~~~----------~~~~W~~L~~~~~~~~s~~~~~~~~~~~~~~~~~~~~  143 (483)
T 3bxj_A           74 LHLYRDSDKKRKKDKAGYVGLVTVPVATLAGRH----------FTEQWYPVTLPTGSGGSGGMGSGGGGGSGGGSGGKGK  143 (483)
T ss_dssp             -------------------------------------------CCEECC-------------------------------
T ss_pred             EEEEecCCccccCCCCceEEEEEEEHHHhcCCC----------CCCeEEECCCCCCccccccccccccccccccccccCC
Confidence            999994 4   23 7899999999999997532          2366888854221                        


Q ss_pred             CCccEEEEEEEEeccC
Q 021949          132 KPKGELHFSYKFSEPT  147 (305)
Q Consensus       132 ~~~G~l~lsl~~~~~~  147 (305)
                      +..|+|+|+++|.+..
T Consensus       144 ~~~G~lrL~v~~~~~~  159 (483)
T 3bxj_A          144 GGCPAVRLKARYQTMS  159 (483)
T ss_dssp             -------CEEEEEECC
T ss_pred             CCCceEEEEEEeeeee
Confidence            2469999999998754

>3qr0_A Phospholipase C-beta (PLC-beta); PH domain, EF hand, C2 domain, TIM barrel domain, hydrolase, calcium binding, phospholipid binding; 2.00A {Sepia officinalis} PDB: 3qr1_A

Probab=99.47  E-value=6.3e-13  Score=135.97  Aligned_cols=120  Identities=17%  Similarity=0.316  Sum_probs=96.8

Q ss_pred             ceEEEEEEEecCCCCCCCCCCCCcEEEEEEecCCCCC-CceEEeEecCCCCCCCeeece-EEEE-eccchhccCceEEEE
Q 021949            5 RALDLNLISAKHLKDVHLISKMDVYAVVSISGDHTIK-KQKVKSHVDRSGGSNPTWNFP-IKFT-FNQSLAQQNRLTLDF   81 (305)
Q Consensus         5 ~~L~V~vvsA~dL~~~~~~gk~dpYv~v~l~~~~~~~-~~~~kT~v~k~~~~nP~Wne~-f~f~-v~~~~~~~~~~~L~v   81 (305)
                      .+|+|+|++|++|...    ++||||+|.|.+.+... ..++||+++++++.||+|||+ |.|. |...++    ..|+|
T Consensus       650 ~~L~V~Visaq~L~~~----~~DPYV~V~l~g~p~d~~~~k~kTkvv~~nglNPvWNE~~F~F~~v~~pel----a~Lrf  721 (816)
T 3qr0_A          650 GTIEIKIISAQFLSDK----QISSYVEVEMYGLPTDTVRKKFKTKIIENNGMDPYYDEKVFVFKKVVLPDL----AVVRI  721 (816)
T ss_dssp             EEEEEEEEEEECCCSS----CCCEEEEEEEESSGGGCEEEEEECCCBCSCSSCCBCCCCCEEEEEESCGGG----CEEEE
T ss_pred             eEEEEEEEEcccCCCC----CCCCeEEEEEeCCCcccccceeeeEEecCCCCCCeEcCceeEEccccCCCc----cEEEE
Confidence            5799999999999753    58999999998643221 157899999887899999998 9998 755443    48999


Q ss_pred             EEEecCCCCCcceeEEEEeCcccccccCCCCCCCCCcceEEEEEeecCCCCC--ccEEEEEEEEeccCC
Q 021949           82 KIKSDGLLGDKTVGEVIVPIKELLDSSSSSSSGDAKSMKFVTYQVRSSSGKP--KGELHFSYKFSEPTV  148 (305)
Q Consensus        82 ~V~d~~~~~d~~IG~~~vpL~~l~~~~~~~~~~~g~~~~~~~~~l~~~~g~~--~G~l~lsl~~~~~~~  148 (305)
                      +|||++   ++|||++.|+|.+|.. +            .++++|++..|+.  .++|.|.|++.+..-
T Consensus       722 ~V~D~d---ddfiG~~~ipL~~L~~-G------------yR~vpL~~~~g~~~~~atLfv~i~~~~~~~  774 (816)
T 3qr0_A          722 IVSEEN---GKFIGHRVMPLDGIKP-G------------YRHVPLRNESNRPLGLASVFAHIVAKDYVS  774 (816)
T ss_dssp             EEEETT---SCEEEEEEEESTTCCC-E------------EEEEEEECTTSCEEEEEEEEEEEEEEECCC
T ss_pred             EEEecC---CCeeeEEEEEHHHcCC-c------------ceEEEEeCCCCCCCCceEEEEEEEEEecCc
Confidence            999984   7899999999999873 2            4578899887775  478999999887544

>3pfq_A PKC-B, PKC-beta, protein kinase C beta type; phosphorylation, transferase; HET: TPO SEP ANP; 4.00A {Rattus norvegicus} PDB: 1tbn_A 1tbo_A 2e73_A

Probab=99.41  E-value=7.4e-13  Score=133.90  Aligned_cols=110  Identities=22%  Similarity=0.229  Sum_probs=92.2

Q ss_pred             cceEEEEEEEecCCCCCCCCCCCCcEEEEEEecCCCCCCceEEeEecCCCCCCCeeeceEEEEeccchhccCceEEEEEE
Q 021949            4 YRALDLNLISAKHLKDVHLISKMDVYAVVSISGDHTIKKQKVKSHVDRSGGSNPTWNFPIKFTFNQSLAQQNRLTLDFKI   83 (305)
Q Consensus         4 ~~~L~V~vvsA~dL~~~~~~gk~dpYv~v~l~~~~~~~~~~~kT~v~k~~~~nP~Wne~f~f~v~~~~~~~~~~~L~v~V   83 (305)
                      .+.|+|+|++|++|...+.++++||||++++..+... ..+.+|+++++ ++||+|||+|.|.+.....   ...|.|+|
T Consensus       171 ~~~L~V~v~~a~~L~~~d~~g~sDPyvkv~l~p~~~~-~~k~kT~v~~~-tlnP~wne~f~f~~~~~~~---~~~L~v~v  245 (674)
T 3pfq_A          171 REVLIVVVRDAKNLVPMDPNGLSDPYVKLKLIPDPKS-ESKQKTKTIKS-SLNPEWNETFRFQLKESDK---DRRLSVEI  245 (674)
T ss_dssp             SSEEEEEEEEEESCCCCSTTSSCCEEEEEEEESCSSC-CSCEECCCCSS-CSSCEEEEEEEEECCSTTT---TCEEEEEE
T ss_pred             cceeeeeeecccccCCCCcccccCcccccccccCccc-ccccccccccc-ccCCCccceeeeecccCCc---cceeeeEE
Confidence            4679999999999999999999999999999754322 46889999988 7999999999999876542   24799999


Q ss_pred             EecCCC-CCcceeEEEEeCcccccccCCCCCCCCCcceEEEEEeecC
Q 021949           84 KSDGLL-GDKTVGEVIVPIKELLDSSSSSSSGDAKSMKFVTYQVRSS  129 (305)
Q Consensus        84 ~d~~~~-~d~~IG~~~vpL~~l~~~~~~~~~~~g~~~~~~~~~l~~~  129 (305)
                      ||++.+ +|++||++.++|.++....           ...|+.+...
T Consensus       246 ~d~d~~~~dd~iG~~~i~l~~l~~~~-----------~~~w~~Lls~  281 (674)
T 3pfq_A          246 WDWDLTSRNDFMGSLSFGISELQKAG-----------VDGWFKLLSQ  281 (674)
T ss_dssp             EECCSSSCCEECCBCCCBTTHHHHCC-----------EEEEEECBCT
T ss_pred             eecccccccccccccccchhhhccCC-----------cccceeeccc
Confidence            999988 8999999999999998533           3678888753

>1yrk_A NPKC-delta, protein kinase C, delta type; C2 domain, protein binding; HET: PTR; 1.70A {Homo sapiens} PDB: 1bdy_A

Probab=99.07  E-value=3.1e-09  Score=83.76  Aligned_cols=119  Identities=13%  Similarity=0.163  Sum_probs=82.7

Q ss_pred             ceEEEEEEEecCCCCCCCCCCCCcEEEEEEecCCCCCCceEEeEecCCCCCCCeeeceEEEEeccchhccCceEEEEEEE
Q 021949            5 RALDLNLISAKHLKDVHLISKMDVYAVVSISGDHTIKKQKVKSHVDRSGGSNPTWNFPIKFTFNQSLAQQNRLTLDFKIK   84 (305)
Q Consensus         5 ~~L~V~vvsA~dL~~~~~~gk~dpYv~v~l~~~~~~~~~~~kT~v~k~~~~nP~Wne~f~f~v~~~~~~~~~~~L~v~V~   84 (305)
                      ..|+|.+.+...-.........||||.|.++....  ..+.+|-+.|..|..|+|||+|.-.|.+.      ..|.|.|+
T Consensus         6 ~flRi~~~~~~~~~~~~~~~~lDPy~aV~vdE~~~--~e~g~t~~~K~kT~~P~Wne~Fd~~V~~G------r~l~i~Vf   77 (126)
T 1yrk_A            6 PFLRIAFNSYELGSLQAEDEANQPFCAVKMKEALS--TERGKTLVQKKPTMYPEWKSTFDAHIYEG------RVIQIVLM   77 (126)
T ss_dssp             CEEEEEEEEEECSSCCCSSSSCCCEEEEEEEEEEE--ETTEEEEECCSCCBCCCTTCEEEEECCTT------CEEEEEEE
T ss_pred             ccEEeeeccccccccCCccccCCceEEEEeeeeEE--cccceeecccCCCCCcCccceEEeeeeCC------EEEEEEEE
Confidence            45778887765422222223589999999975210  11225534444589999999999998764      48999999


Q ss_pred             ecCCCCCcceeEEEEeCcccccccCCCCCCCCCcceEEEEEeecCCCCCccEEEEEEEEe
Q 021949           85 SDGLLGDKTVGEVIVPIKELLDSSSSSSSGDAKSMKFVTYQVRSSSGKPKGELHFSYKFS  144 (305)
Q Consensus        85 d~~~~~d~~IG~~~vpL~~l~~~~~~~~~~~g~~~~~~~~~l~~~~g~~~G~l~lsl~~~  144 (305)
                      +...   +||..|+|.+.+|..+- ....+    ....|+.|.     +.|+|++.+++.
T Consensus        78 h~a~---~fvAn~tV~~edL~~~c-~~~~g----~~e~WvdLe-----P~Gkl~~~i~~~  124 (126)
T 1yrk_A           78 RAAE---EPVSEVTVGVSVLAERC-KKNNG----KAEFWLDLQ-----PQAKVLMSVQYF  124 (126)
T ss_dssp             EETT---EEEEEEEEEHHHHHHHH-HTTTT----EEEEEEECB-----SSCEEEEEEEEE
T ss_pred             cCCC---CeeeEEEEEHHHHHhhh-ccCCC----ceEEEEecc-----cCcEEEEEEEEe
Confidence            8765   89999999999999641 00011    357788775     689999999875

>2enj_A NPKC-theta, protein kinase C theta type; beta-sandwich, phosphotyrosine binding, TCR, T-cell, diacylglycerol, phorbol ester, structural genomics; NMR {Homo sapiens}

Probab=99.03  E-value=4.8e-09  Score=83.75  Aligned_cols=120  Identities=12%  Similarity=0.203  Sum_probs=83.4

Q ss_pred             ceEEEEEEEecCCCCCC-CCCCCCcEEEEEEecCCCCCCceEEe-EecCCCCCCCeeeceEEEEeccchhccCceEEEEE
Q 021949            5 RALDLNLISAKHLKDVH-LISKMDVYAVVSISGDHTIKKQKVKS-HVDRSGGSNPTWNFPIKFTFNQSLAQQNRLTLDFK   82 (305)
Q Consensus         5 ~~L~V~vvsA~dL~~~~-~~gk~dpYv~v~l~~~~~~~~~~~kT-~v~k~~~~nP~Wne~f~f~v~~~~~~~~~~~L~v~   82 (305)
                      ..|+|.+.+........ .....||||.|.++....  ..+.+| ...+. |..|+|||+|.-.|.+.      ..|.|.
T Consensus        10 ~flRi~l~~~~~~~~~~~~~~~lDPY~aV~VdE~~~--te~gqtl~~Kkk-T~~P~Wne~Fd~~V~~G------r~l~i~   80 (138)
T 2enj_A           10 PFLRIGLSNFDCGSCQSCQGEAVNPYCAVLVKEYVE--SENGQMYIQKKP-TMYPPWDSTFDAHINKG------RVMQII   80 (138)
T ss_dssp             CCEEEEEEEEECCCCCCSCCCCCCCEEEEEEEEEEE--ETTEEEEEEEEE-EECCCSSSEEEECCCSS------CEEEEE
T ss_pred             cceEEEeeccccCCCCCcccccCCceEEEEeeeeee--ccCceeecccCC-CCCccccceEeeeEECC------eEEEEE
Confidence            45888887776543321 123589999999875210  012555 33333 78999999999998764      489999


Q ss_pred             EEecCCCCCcceeEEEEeCcccccccCCCCCCCCCcceEEEEEeecCCCCCccEEEEEEEEecc
Q 021949           83 IKSDGLLGDKTVGEVIVPIKELLDSSSSSSSGDAKSMKFVTYQVRSSSGKPKGELHFSYKFSEP  146 (305)
Q Consensus        83 V~d~~~~~d~~IG~~~vpL~~l~~~~~~~~~~~g~~~~~~~~~l~~~~g~~~G~l~lsl~~~~~  146 (305)
                      |++...   +||..|+|.+.+|..+- ....+    ....|+.|.     +.|+|++.+++.-.
T Consensus        81 Vfh~a~---~fVAn~tV~~edL~~~c-k~~~g----~~e~WvdLe-----P~Gkl~v~i~~~~e  131 (138)
T 2enj_A           81 VKGKNV---DLISETTVELYSLAERC-RKNNG----KTEIWLELK-----PQGRMLMNARYFLE  131 (138)
T ss_dssp             EECSSC---SCCEEEEEESHHHHHHH-HHTTT----CEEEEEECB-----SSCEEEEEEEECCC
T ss_pred             EEcCCC---CeeeEEEEEHHHHHhhh-ccCCC----ceEEEEecc-----cCcEEEEEEEEEEe
Confidence            997654   89999999999999641 00022    347788875     68999999999643

>2yrb_A Protein fantom; beta sandwich, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: b.7.1.1

Probab=97.04  E-value=0.0049  Score=50.34  Aligned_cols=130  Identities=12%  Similarity=0.212  Sum_probs=86.0

Q ss_pred             ceEEEEEEEecCCCCC-CCCCCCCcEEEEEEecCCCCCCceEEeEecCCCCCCCeeeceEEEEeccchhc---cCceEEE
Q 021949            5 RALDLNLISAKHLKDV-HLISKMDVYAVVSISGDHTIKKQKVKSHVDRSGGSNPTWNFPIKFTFNQSLAQ---QNRLTLD   80 (305)
Q Consensus         5 ~~L~V~vvsA~dL~~~-~~~gk~dpYv~v~l~~~~~~~~~~~kT~v~k~~~~nP~Wne~f~f~v~~~~~~---~~~~~L~   80 (305)
                      ..|+|.|.++.--... ...+..+|...++++--+   -..+.|.+.+  +.+|.+|.+..|.|.....-   .....|.
T Consensus        18 nlfEihi~~~~~~~~~l~~~~d~~p~tF~t~dF~d---fEtq~Tpv~~--G~~p~y~fts~Y~V~~d~~fl~yL~~~~l~   92 (156)
T 2yrb_A           18 NLFEIHINKVTFSSEVLQASGDKEPVTFCTYAFYD---FELQTTPVVR--GLHPEYNFTSQYLVHVNDLFLQYIQKNTIT   92 (156)
T ss_dssp             EEEEEEEEEECCCHHHHHHHCSSCCEEEEEECSTT---CCCEECCCEE--SSSCCCCEEEEEEECCSHHHHHHHHHCCEE
T ss_pred             cEEEEEEeEEEEcHHHHhhccccCCcEEEEEEEec---eEeeeccccc--CCCCCcceEEEEEEEeCHHHHHHHhcCCEE
Confidence            5688888887621110 011335666655555332   3688888877  58999999988887554421   1124678


Q ss_pred             EEEEecCCCCCcceeEEEEeCcccccccCCCCCCCCCcceEEEEEeecCCC--CCccEEEEEEEEeccCC
Q 021949           81 FKIKSDGLLGDKTVGEVIVPIKELLDSSSSSSSGDAKSMKFVTYQVRSSSG--KPKGELHFSYKFSEPTV  148 (305)
Q Consensus        81 v~V~d~~~~~d~~IG~~~vpL~~l~~~~~~~~~~~g~~~~~~~~~l~~~~g--~~~G~l~lsl~~~~~~~  148 (305)
                      |+|.......-+.||.++|+|.+|+.+.    .    .+ .....|...++  ..-|+|++.|+++-.+.
T Consensus        93 lELhqa~g~~~~tla~~~I~l~~lLe~~----~----~i-~g~~~L~g~~g~~~~~G~LeywiRL~~Pi~  153 (156)
T 2yrb_A           93 LEVHQAYSTEYETIAACQLKFHEILEKS----G----RI-FCTASLIGTKGDIPNFGTVEYWFRLRVSGP  153 (156)
T ss_dssp             EEEEEECSSCEEEEEEEEECCSHHHHCC----S----CE-EEEEEECBSSSCCTTSEEEEEEEEEEECCC
T ss_pred             EEEEEeeCCCceEEEEEEEEhHHhhCcC----C----ce-EEEEEEEcCCCCcceEEEEEEEEEEecccC
Confidence            8887765445568999999999999644    1    12 34456666666  57899999999987654

>3l4c_A Dedicator of cytokinesis protein 1; DOCK180, DOCK1, phosphoinositide specificity, guanine exchan factor, RHO GTPase, cytoskeleton, cell migration; 2.37A {Homo sapiens}

Probab=96.43  E-value=0.045  Score=47.13  Aligned_cols=96  Identities=17%  Similarity=0.178  Sum_probs=59.6

Q ss_pred             cceEEEEEEEecCCCCCCCCCCCCcEEEEEEecCCCC-------------CCceEEeEecCCCCCCCeeeceEEEEeccc
Q 021949            4 YRALDLNLISAKHLKDVHLISKMDVYAVVSISGDHTI-------------KKQKVKSHVDRSGGSNPTWNFPIKFTFNQS   70 (305)
Q Consensus         4 ~~~L~V~vvsA~dL~~~~~~gk~dpYv~v~l~~~~~~-------------~~~~~kT~v~k~~~~nP~Wne~f~f~v~~~   70 (305)
                      ...|.|++.+++--+ .......|.-|+|.+..++..             ....++|.|... +.+|.|+|++++.|+..
T Consensus        26 RNdLYVtl~~g~F~~-~~k~~aRNIeV~vevr~~~G~~i~~~I~~~sg~~~~se~~S~V~YH-nk~P~w~EtIKi~LP~~  103 (220)
T 3l4c_A           26 RNDIYVTLVQGDFDK-GSKTTAKNVEVTVSVYDEDGKRLEHVIFPGAGDEAISEYKSVIYYQ-VKQPRWFETVKVAIPIE  103 (220)
T ss_dssp             CEEEEEEEEEEECCC-SSSSSCCCEEEEEEEEETTSCBCCSCEECTTCCSCBSCEECCCCTT-CSSCCCCEEEEEEECTT
T ss_pred             cccEEEEeeEeEECC-CCCCCcceEEEEEEEEcCCCCCcccCEEcCCCCCCceeEEEEEEEc-CCCCCceEeEEEeeChh
Confidence            345778888875222 111122344455554332211             135677877766 68999999999999876


Q ss_pred             hhccCceEEEEEEEecCCC-----CCcceeEEEEeCcc
Q 021949           71 LAQQNRLTLDFKIKSDGLL-----GDKTVGEVIVPIKE  103 (305)
Q Consensus        71 ~~~~~~~~L~v~V~d~~~~-----~d~~IG~~~vpL~~  103 (305)
                      ..  .+..|.|++++....     .++.+|-+++||-+
T Consensus       104 ~~--~~~HLlFtFrH~S~~~k~dk~E~pfg~a~lPL~~  139 (220)
T 3l4c_A          104 DV--NRSHLRFTFRHRSSQDSKDKSEKIFALAFVKLMR  139 (220)
T ss_dssp             SS--TTEEEEEEEEECCCCSSCCCCCCEEEEEEEESBC
T ss_pred             hc--CCeEEEEEEEEecccccccccCCeeEEEEEEccc
Confidence            54  346888888875432     23468888888754

>1dx0_A Prion protein; brain, repeat; NMR {Bos taurus} SCOP: d.6.1.1 PDB: 1dx1_A 1qlx_A 1qlz_A

Probab=95.88  E-value=0.00017  Score=61.04  Aligned_cols=25  Identities=28%  Similarity=0.424  Sum_probs=9.8

Q ss_pred             CCCcchhhhHHHHHHHHHHhhhhcc
Q 021949          263 GGLGFGTGLLGGMLGGLLIGDIVSD  287 (305)
Q Consensus       263 ~g~g~~~g~~~g~~~g~~~~~~~~~  287 (305)
                      +.+++++|+++|||+|+||+++|++
T Consensus       101 ~a~aAa~Gag~G~LGGalLG~a~~~  125 (219)
T 1dx0_A          101 VAGAAAAGAVVGGLGGYMLGSAMSR  125 (219)
T ss_dssp             ------------CCCSCEECCCCCC
T ss_pred             HHHHHHHHHHhhhhhhhhhhccccc
Confidence            3444566777777888888777765

>1dx0_A Prion protein; brain, repeat; NMR {Bos taurus} SCOP: d.6.1.1 PDB: 1dx1_A 1qlx_A 1qlz_A

Probab=95.84  E-value=0.00035  Score=59.19  Aligned_cols=30  Identities=17%  Similarity=0.107  Sum_probs=9.9

Q ss_pred             CCCCCcchhhhHHHHHHHHHHhhhhccccc
Q 021949          261 SNGGLGFGTGLLGGMLGGLLIGDIVSDAAD  290 (305)
Q Consensus       261 ~~~g~g~~~g~~~g~~~g~~~~~~~~~~~~  290 (305)
                      ....+++++++++|+++|||.+.||+++.+
T Consensus        95 ~kg~~g~a~aAa~Gag~G~LGGalLG~a~~  124 (219)
T 1dx0_A           95 KTNMKHVAGAAAAGAVVGGLGGYMLGSAMS  124 (219)
T ss_dssp             ------------------CCCSCEECCCCC
T ss_pred             CCCcchHHHHHHHHHHhhhhhhhhhhcccc
Confidence            334567888899999999999999988644

>3hhm_A Phosphatidylinositol-4,5-bisphosphate 3-kinase catalytic subunit alpha isoform; PI3KCA, PI3K, PIK3R1, phosphatidilynositol 3,4,5- triphosphate, wortmannin, H1047R, ATP-binding, disease mutation, kinase; HET: KWT; 2.80A {Homo sapiens} PDB: 3hiz_A 2rd0_A 4a55_A* 2enq_A

Probab=94.30  E-value=0.33  Score=50.99  Aligned_cols=98  Identities=14%  Similarity=0.085  Sum_probs=62.6

Q ss_pred             cceEEEEEEEecCCCCCCCCCCCCcEEEEEEecCCCCCCceEEeEecCCCCCCCeeeceEEEEeccchhccCceEEEEEE
Q 021949            4 YRALDLNLISAKHLKDVHLISKMDVYAVVSISGDHTIKKQKVKSHVDRSGGSNPTWNFPIKFTFNQSLAQQNRLTLDFKI   83 (305)
Q Consensus         4 ~~~L~V~vvsA~dL~~~~~~gk~dpYv~v~l~~~~~~~~~~~kT~v~k~~~~nP~Wne~f~f~v~~~~~~~~~~~L~v~V   83 (305)
                      .+.+.|+|+++..+.. +.....+.||.+.+-.....-....+|+.+ . ..++.|||.++|++.-..+- +...|.|.|
T Consensus       354 ~~~f~v~i~~~~~~n~-~~~~~~~~~V~~~l~hG~~~L~~~~~T~~~-~-~~~~~Wne~l~f~i~i~dLP-r~arL~~tl  429 (1091)
T 3hhm_A          354 NSALRIKILCATYVNV-NIRDIDKIYVRTGIYHGGEPLCDNVNTQRV-P-CSNPRWNEWLNYDIYIPDLP-RAARLCLSI  429 (1091)
T ss_dssp             CSEEEEEEEEESCCCC-CCSSCCCCCEEEEEESSSCSSCCEECCCCC-C-TTSCEEEEEEEEEEEGGGCC-TTCEEEEEE
T ss_pred             CCCEEEEEEEecCCCC-CccccceEEEEEEEEECCEEccCceecccc-C-CCCCCCCeeEEecCccccCC-hhcEEEEEE
Confidence            3578999999988753 333346789998887543221233444432 2 46788999999987554443 347899999


Q ss_pred             EecCCC-----CCcceeEEEEeCcccc
Q 021949           84 KSDGLL-----GDKTVGEVIVPIKELL  105 (305)
Q Consensus        84 ~d~~~~-----~d~~IG~~~vpL~~l~  105 (305)
                      |+....     .+..||++.++|-+..
T Consensus       430 ~~~~~~~~~~~~~~~lg~~n~~lfd~~  456 (1091)
T 3hhm_A          430 CSVKGRKGAKEEHCPLAWGNINLFDYT  456 (1091)
T ss_dssp             CCCCCCC-------CCEEEEEESBCTT
T ss_pred             EEecCccCcccccceeEEeeeeeEccC
Confidence            985432     2246888888776653

>2wxf_A Phosphatidylinositol-4,5-bisphosphate 3-kinase Ca subunit delta isoform; transferase, phosphoprotein, isoform-specific inhibitors; HET: 039; 1.90A {Mus musculus} PDB: 2wxg_A* 2wxh_A* 2wxi_A* 2wxj_A* 2wxk_A* 2wxl_A* 2wxm_A* 2wxn_A* 2wxo_A* 2wxp_A* 2wxq_A* 2wxr_A 2x38_A*

Probab=94.28  E-value=0.22  Score=51.73  Aligned_cols=96  Identities=13%  Similarity=0.160  Sum_probs=58.3

Q ss_pred             cceEEEEEEEecCCCCCCCCCCCCcEEEEEEecCCCCCCceEEeEecCCCCCCCeeeceEEEEeccchhccCceEEEEEE
Q 021949            4 YRALDLNLISAKHLKDVHLISKMDVYAVVSISGDHTIKKQKVKSHVDRSGGSNPTWNFPIKFTFNQSLAQQNRLTLDFKI   83 (305)
Q Consensus         4 ~~~L~V~vvsA~dL~~~~~~gk~dpYv~v~l~~~~~~~~~~~kT~v~k~~~~nP~Wne~f~f~v~~~~~~~~~~~L~v~V   83 (305)
                      ...|.|+|+++.++...   ...+.||.+.+-.....-.....|..+.. ..++.|||.+.|++.-..+- +...|.|.|
T Consensus       216 ~~~f~i~i~~~~~~~~~---~~~~~~V~~~l~~g~~~l~~~~~T~~~~~-~~~~~Wne~l~f~i~i~dLP-r~a~L~~ti  290 (940)
T 2wxf_A          216 EQPFSIELIEGRKVNAD---ERMKLVVQAGLFHGNEMLCKTVSSSEVNV-CSEPVWKQRLEFDISVCDLP-RMARLCFAL  290 (940)
T ss_dssp             CSEEEEEEEEEECCCC------CEEEEEEEEEETTEESSCCEECCCEES-CSSCEEEEEEEEEEEGGGCC-TTCEEEEEE
T ss_pred             CCceEEEEEEecccCCC---CCceEEEEEEEEECCEEccCceecccccC-CCCcccceEEEcccccccCC-cccEEEEEE
Confidence            35789999999887533   34678888887643211112333433332 46899999999987555443 347899999


Q ss_pred             EecCCC-------------CCcceeEEEEeCccc
Q 021949           84 KSDGLL-------------GDKTVGEVIVPIKEL  104 (305)
Q Consensus        84 ~d~~~~-------------~d~~IG~~~vpL~~l  104 (305)
                      |+....             .+..||++.++|-+.
T Consensus       291 ~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~lFd~  324 (940)
T 2wxf_A          291 YAVVEKAKKARSTKKKSKKADCPIAWANLMLFDY  324 (940)
T ss_dssp             EEEC----------------CEEEEEEEEESBCT
T ss_pred             EEecCCccCccccccccccccceEEEEeeeEECC
Confidence            985221             123566666665543

>2y3a_A Phosphatidylinositol-4,5-bisphosphate 3-kinase Ca subunit beta isoform; transferase, phosphoinositide 3-kinase, RTK; HET: GD9; 3.30A {Mus musculus}

Probab=89.67  E-value=0.31  Score=51.36  Aligned_cols=79  Identities=14%  Similarity=0.162  Sum_probs=49.3

Q ss_pred             cceEEEEEEEecCCCCCCCCCCCCcEEEEEEecCCCCCCceEEeEecCCCCCCCeeeceEEEEeccchhccCceEEEEEE
Q 021949            4 YRALDLNLISAKHLKDVHLISKMDVYAVVSISGDHTIKKQKVKSHVDRSGGSNPTWNFPIKFTFNQSLAQQNRLTLDFKI   83 (305)
Q Consensus         4 ~~~L~V~vvsA~dL~~~~~~gk~dpYv~v~l~~~~~~~~~~~kT~v~k~~~~nP~Wne~f~f~v~~~~~~~~~~~L~v~V   83 (305)
                      ...|.|+|+++.++...   ...+.||.+.+-.....-....+|..+.. ..++.|||.+.|.+.-..+- +...|.|.|
T Consensus       352 ~~~f~i~i~~~~~~~~~---~~~~~~V~~~l~~g~~~L~~~~~T~~~~~-~~~~~Wnewl~f~i~~~dLP-r~a~L~~ti  426 (1092)
T 2y3a_A          352 NNPFQITLVKGNKLNTE---ETVKVHVRAGLFHGTELLCKTVVSSEISG-KNDHIWNEQLEFDINICDLP-RMARLCFAV  426 (1092)
T ss_dssp             CSEEEEEECCCCCCCCC---SSCCCCCBCCEEETTEESSCCCBCCCCCS-SSCCCCCEEEEEEEESSSCC-TTCEEEEEC
T ss_pred             CCCEEEEEEEeccCCCC---CCceEEEEEEEEECCEEccCceecccccC-CCCCccceeEEeCCccccCC-hhcEEEEEE
Confidence            35788999998877533   34677887666532211112233433322 56899999999987555443 347899999


Q ss_pred             EecC
Q 021949           84 KSDG   87 (305)
Q Consensus        84 ~d~~   87 (305)
                      |+..
T Consensus       427 ~~~~  430 (1092)
T 2y3a_A          427 YAVL  430 (1092)
T ss_dssp             CCC-
T ss_pred             EEec
Confidence            9853

>2qzq_A Axin interactor, dorsalization associated protein; beta sheet sandwich, coiled coil, signaling protein, lipid binding protein; 1.90A {Danio rerio} PDB: 2qz5_A

Probab=86.00  E-value=2.2  Score=34.37  Aligned_cols=96  Identities=17%  Similarity=0.150  Sum_probs=57.9

Q ss_pred             EEEEEEEecCCCCCCCCCCCCcEEEEEEecCCCCC-CceEEeEec-CCCCCCCeeeceEEEEeccchhccCceEEEEEEE
Q 021949            7 LDLNLISAKHLKDVHLISKMDVYAVVSISGDHTIK-KQKVKSHVD-RSGGSNPTWNFPIKFTFNQSLAQQNRLTLDFKIK   84 (305)
Q Consensus         7 L~V~vvsA~dL~~~~~~gk~dpYv~v~l~~~~~~~-~~~~kT~v~-k~~~~nP~Wne~f~f~v~~~~~~~~~~~L~v~V~   84 (305)
                      |.|.|.+- +|++..  .-.|||++|++....... ...+.|.+. +..+..-.||.++++...-+.+.. ...|.||++
T Consensus        16 l~v~Ie~i-glkda~--~~~~P~~tVSV~D~~G~~ve~~QdTpv~~~~~~~yv~f~~~v~lqtple~lp~-G~aivfElk   91 (152)
T 2qzq_A           16 LTLTIEKI-GLKDAG--QCIDPYITVSVKDLNGIDLNPVQDTPVATRKEDTYIHFSVDVEIQRHLEKLPK-GAAIFFEFK   91 (152)
T ss_dssp             EEEEEEEE-ECTTGG--GCEEEEEEEEEECTTSCBSSCCEECCCCCEECSSEEEEEEEEECSSCGGGSCT-TCEEEEEEE
T ss_pred             EEEEEEEE-EeCCHH--HccCCeEEEEEEcCCCCCccccccCCCcceecCCeEEEeeEEEeeCcHHHCCC-CcEEEEEEE
Confidence            56666554 676644  337999999987644321 245667664 222333445555555443333333 467889998


Q ss_pred             ecCCCCCc--ceeEEEEeCccccc
Q 021949           85 SDGLLGDK--TVGEVIVPIKELLD  106 (305)
Q Consensus        85 d~~~~~d~--~IG~~~vpL~~l~~  106 (305)
                      +....+.+  ..+++.+.++++..
T Consensus        92 H~k~kkkk~S~kCw~f~~~d~i~~  115 (152)
T 2qzq_A           92 HYKPKKRFTSTKCFAFMEMDEIKP  115 (152)
T ss_dssp             EEETTTTEEEEEEEEEEEGGGCCS
T ss_pred             EecccceeeeeeeEEEEEhhhccc
Confidence            87655333  57889999888764

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	305
d1wfja_	136	b.7.1.2 (A:) C2 domain protein At1g63220 {Thale cr	4e-12
d2nq3a1	133	b.7.1.1 (A:13-145) E3 ubiquitin-protein ligase Itc	9e-10
d1w15a_	138	b.7.1.2 (A:) Synaptotagmin IV {Rat (Rattus norvegi	1e-07
d1rlwa_	126	b.7.1.1 (A:) Domain from cytosolic phospholipase A	3e-07
d1uowa_	157	b.7.1.2 (A:) Synaptogamin I {Rat (Rattus norvegicu	2e-06
d2cm5a1	137	b.7.1.2 (A:541-677) C2b-domain of rabphilin {Rat (	2e-06
d2bwqa1	125	b.7.1.2 (A:729-853) Regulating synaptic membrane e	2e-06
d2ep6a1	126	b.7.1.1 (A:92-217) Multiple C2 and transmembrane d	8e-06
d1a25a_	132	b.7.1.2 (A:) C2 domain from protein kinase c (beta	1e-05
d1qasa2	131	b.7.1.1 (A:626-756) PI-specific phospholipase C is	1e-05
d1rsya_	143	b.7.1.2 (A:) Synaptogamin I {Rat (Rattus norvegicu	3e-05
d1rh8a_	142	b.7.1.2 (A:) Piccolo {Rat (Rattus norvegicus) [Tax	1e-04
d2zkmx2	122	b.7.1.1 (X:678-799) Phospholipase C-beta-2 {Human	2e-04

>d1wfja_ b.7.1.2 (A:) C2 domain protein At1g63220 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 136

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: C2 domain protein At1g63220
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

 Score = 60.5 bits (146), Expect = 4e-12
 Identities = 34/137 (24%), Positives = 56/137 (40%), Gaps = 20/137 (14%)

Query: 7   LDLNLISAKHLKDVHLISKMDVYAVVSISGDHTIKKQKVKSHVDRSGGSNPTWNFPIKFT 66
           L++ L+SAK L+D   ++ MD Y  ++       + Q  KS+V    G+ P WN    FT
Sbjct: 12  LEVVLVSAKGLEDADFLNNMDPYVQLT------CRTQDQKSNVAEGMGTTPEWNETFIFT 65

Query: 67  FNQSLAQQNRLTLDFKIKSDGLLGDKTVGEVIVPIKELLDSSSSSSSGDAKSMKFVTYQV 126
            ++   +      D     D    D  VGE  +P++ +             S+    Y V
Sbjct: 66  VSEGTTELKAKIFDK----DVGTEDDAVGEATIPLEPVFVE---------GSIPPTAYNV 112

Query: 127 RSSSGKPKGELHFSYKF 143
                + KGE+  +  F
Sbjct: 113 V-KDEEYKGEIWVALSF 128

>d2nq3a1 b.7.1.1 (A:13-145) E3 ubiquitin-protein ligase Itchy {Human (Homo sapiens) [TaxId: 9606]} Length = 133

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: PLC-like (P variant)
domain: E3 ubiquitin-protein ligase Itchy
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 53.6 bits (128), Expect = 9e-10
 Identities = 20/134 (14%), Positives = 40/134 (29%), Gaps = 15/134 (11%)

Query: 7   LDLNLISAKHLKDVHLISKMDVYAVVSISGDHTIKKQKVKSHVDRSGGSNPTWNFPIKFT 66
           L + +ISAK  ++         Y  V++  D   KK +  ++   S          +   
Sbjct: 8   LQITVISAKLKENKKNWFGPSPYVEVTV--DGQSKKTEKCNN-TNSPKWKQPLTVIVTPV 64

Query: 67  FNQSLAQQNRLTLDFKIKSDGLLGDKTVGEVIVPIKELLDSSSSSSSGDAKSMKFVTYQV 126
                   +            L  D  +G   + I E L S++        +++      
Sbjct: 65  SKLHFRVWSH---------QTLKSDVLLGTAALDIYETLKSNNMKLEEVVVTLQL---GG 112

Query: 127 RSSSGKPKGELHFS 140
                +  G+L   
Sbjct: 113 DKEPTETIGDLSIC 126

>d1w15a_ b.7.1.2 (A:) Synaptotagmin IV {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 138

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: Synaptotagmin IV
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 47.8 bits (113), Expect = 1e-07
 Identities = 18/99 (18%), Positives = 42/99 (42%), Gaps = 5/99 (5%)

Query: 7   LDLNLISAKHLKDVHLISKMDVYAVVSISGDHTIKKQKVKSHVDRSGGSNPTWNFPIKFT 66
           L + ++ A+HL    +    D Y  V++      +  K K+HV +    N  +N    F 
Sbjct: 17  LTVVVLKARHLPKSDVSGLSDPYVKVNLYHAKK-RISKKKTHVKK-CTPNAVFNE--LFV 72

Query: 67  FNQSLAQQNRLTLDFKIK-SDGLLGDKTVGEVIVPIKEL 104
           F+        ++++F +  S+    ++ +G +++     
Sbjct: 73  FDIPCESLEEISVEFLVLDSERGSRNEVIGRLVLGATAE 111

>d1rlwa_ b.7.1.1 (A:) Domain from cytosolic phospholipase A2 {Human (Homo sapiens) [TaxId: 9606]} Length = 126

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: PLC-like (P variant)
domain: Domain from cytosolic phospholipase A2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 46.2 bits (109), Expect = 3e-07
 Identities = 20/142 (14%), Positives = 45/142 (31%), Gaps = 25/142 (17%)

Query: 2   ASYRALDLNLISAKHLKDVH---LISKMDVYAVVSISGDHTIKKQKVKSHVDRSGGSNPT 58
           +S++   + ++ A  +       ++   D Y  + IS     +K+        +   NP 
Sbjct: 1   SSHK-FTVVVLRATKVTKGAFGDMLDTPDPYVELFISTTPDSRKR----TRHFNNDINPV 55

Query: 59  WNFPIKFTFNQSLAQQNRLTLDFKIKSDGLLGDKTVGEVIVPIKELLDSSSSSSSGDAKS 118
           WN   +F  + +      +TL         + D+T+G     +  +              
Sbjct: 56  WNETFEFILDPNQENVLEITLMDA----NYVMDETLGTATFTVSSMKVGEKKE------- 104

Query: 119 MKFVTYQVRSSSGKPKGELHFS 140
              V +     +   +  L  S
Sbjct: 105 ---VPFIFNQVT---EMVLEMS 120

>d1uowa_ b.7.1.2 (A:) Synaptogamin I {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 157

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: Synaptogamin I
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 44.8 bits (105), Expect = 2e-06
 Identities = 19/98 (19%), Positives = 41/98 (41%), Gaps = 3/98 (3%)

Query: 7   LDLNLISAKHLKDVHLISKMDVYAVVSISGDHTIKKQKVKSHVDRSGGSNPTWNFPIKFT 66
           L + ++ AK+LK + +    D Y  + +  +    K+K K+ + +    NP +N    F 
Sbjct: 27  LTVVILEAKNLKKMDVGGLSDPYVKIHLMQNGKRLKKK-KTTIKK-NTLNPYYNESFSFE 84

Query: 67  FNQSLAQQNRLTLDFKIKSDGLLGDKTVGEVIVPIKEL 104
                 Q+ ++ +      D +  +  +G+V V     
Sbjct: 85  VPFEQIQKVQVVVTVLDY-DKIGKNDAIGKVFVGYNST 121

>d2cm5a1 b.7.1.2 (A:541-677) C2b-domain of rabphilin {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 137

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: C2b-domain of rabphilin
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 44.1 bits (103), Expect = 2e-06
 Identities = 15/98 (15%), Positives = 31/98 (31%), Gaps = 3/98 (3%)

Query: 7   LDLNLISAKHLKDVHLISKMDVYAVVSISGDHTIKKQKVKSHVDRSGGSNPTWNFPIKFT 66
           L + +I   HL  +      D +  + +  D   K +       ++   NP +N    + 
Sbjct: 17  LIVGIIRCVHLAAMDANGYSDPFVKLWLKPDMGKKAKHKTQIKKKT--LNPEFNEEFFYD 74

Query: 67  FNQSLAQQNRLTLDFKIKSDGLLGDKTVGEVIVPIKEL 104
              S   +  L +      D    +  +G   + I   
Sbjct: 75  IKHSDLAKKSLDISV-WDYDIGKSNDYIGGCQLGISAK 111

>d2bwqa1 b.7.1.2 (A:729-853) Regulating synaptic membrane exocytosis protein, rim2 {Human (Homo sapiens) [TaxId: 9606]} Length = 125

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: Regulating synaptic membrane exocytosis protein, rim2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.9 bits (103), Expect = 2e-06
 Identities = 16/103 (15%), Positives = 39/103 (37%), Gaps = 8/103 (7%)

Query: 7   LDLNLISAKHLKDVHLISKMDVYAVVSISGDHTIKKQKVKSHVDRSGGSNPTWNFPIKFT 66
           L + ++ AK L         + Y  +    D + K ++    V ++    P WN    F 
Sbjct: 16  LIVTILGAKDLPSREDGRPRNPYVKIYFLPDRSDKNKRRTKTVKKT--LEPKWNQ--TFI 71

Query: 67  FNQ-SLAQQNRLTLDFKIKSDGLLG---DKTVGEVIVPIKELL 105
           ++     +     L+  +     +     + +GE+++ ++  L
Sbjct: 72  YSPVHRREFRERMLEITLWDQARVREEESEFLGEILIELETAL 114

>d2ep6a1 b.7.1.1 (A:92-217) Multiple C2 and transmembrane domain-containing protein 2, MCTP2 {Human (Homo sapiens) [TaxId: 9606]} Length = 126

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: PLC-like (P variant)
domain: Multiple C2 and transmembrane domain-containing protein 2, MCTP2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.5 bits (99), Expect = 8e-06
 Identities = 17/137 (12%), Positives = 36/137 (26%), Gaps = 21/137 (15%)

Query: 7   LDLNLISAKHLKDVHLISKMDVYAVVSISGDHTIKKQKVKSHVDRSGGSNPTWNFPIKFT 66
           L + ++ A  L       K D + ++ +  D        K             N      
Sbjct: 8   LQVKVLKAADLLAADFSGKSDPFCLLELGNDRLQTHTVYK-----------NLNPEWNKV 56

Query: 67  FNQSLAQQNRLTLDFKIKSDGLLGDKTVGEVIVPIKELLDSSSSSSSGDAKSMKFVTYQV 126
           F   +   + +        DG      +G+V +P+  + D                  + 
Sbjct: 57  FTFPIKDIHDVLEVTVFDEDGDKPPDFLGKVAIPLLSIRDGQP----------NCYVLKN 106

Query: 127 RSSSGKPKGELHFSYKF 143
           +      KG ++     
Sbjct: 107 KDLEQAFKGVIYLEMDL 123

>d1a25a_ b.7.1.2 (A:) C2 domain from protein kinase c (beta) {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 132

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: C2 domain from protein kinase c (beta)
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 42.0 bits (98), Expect = 1e-05
 Identities = 22/99 (22%), Positives = 39/99 (39%), Gaps = 6/99 (6%)

Query: 7   LDLNLISAKHLKDVHLISKMDVYAVVSISGDHTIKKQKVKSHVDRSGGSNPTWNFPIKFT 66
           L + +  AK+L  +      D Y  + +  D   + ++    +  S   NP WN    F 
Sbjct: 17  LIVVVRDAKNLVPMDPNGLSDPYVKLKLIPDPKSESKQKTKTIKCS--LNPEWNE--TFR 72

Query: 67  FNQSLAQQNRLTLDFKIKSDGLLG-DKTVGEVIVPIKEL 104
           F    + ++R  L  +I    L   +  +G +   I EL
Sbjct: 73  FQLKESDKDR-RLSVEIWDWDLTSRNDFMGSLSFGISEL 110

>d1qasa2 b.7.1.1 (A:626-756) PI-specific phospholipase C isozyme D1 (PLC-D1), C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 131

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: PLC-like (P variant)
domain: PI-specific phospholipase C isozyme D1 (PLC-D1), C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 41.7 bits (97), Expect = 1e-05
 Identities = 19/99 (19%), Positives = 39/99 (39%), Gaps = 6/99 (6%)

Query: 7   LDLNLISAKHL--KDVHLISKMDVYAVVSISGDHTIKKQKVKSHVDRSGGSNPTWNFPIK 64
           L + +IS + L   + +  S +D   +V I G         ++ V  + G NP W+   +
Sbjct: 6   LRVRIISGQQLPKVNKNKNSIVDPKVIVEIHGVGR-DTGSRQTAVITNNGFNPRWDM--E 62

Query: 65  FTFNQSLAQQNRLTLDFKIKSDGLLGDKTVGEVIVPIKE 103
           F F  ++     +    +   D    +  +G+  +P   
Sbjct: 63  FEFEVTVPDLALVRFMVE-DYDSSSKNDFIGQSTIPWNS 100

>d1rsya_ b.7.1.2 (A:) Synaptogamin I {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 143

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: Synaptogamin I
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 41.3 bits (96), Expect = 3e-05
 Identities = 23/98 (23%), Positives = 36/98 (36%), Gaps = 5/98 (5%)

Query: 7   LDLNLISAKHLKDVHLISKMDVYAVVSISGDHTIKKQKVKSHVDRSGGSNPTWNFPIKFT 66
           L + +I A  L  + +    D Y  V +  D   KK+K ++ V      NP +N    F 
Sbjct: 36  LLVGIIQAAELPALDMGGTSDPYVKVFLLPD---KKKKFETKV-HRKTLNPVFNEQFTFK 91

Query: 67  FNQSLAQQNRLTLDFKIKSDGLLGDKTVGEVIVPIKEL 104
              S      L +      D       +GE  VP+  +
Sbjct: 92  VPYSELGGKTLVMAVYDF-DRFSKHDIIGEFKVPMNTV 128

>d1rh8a_ b.7.1.2 (A:) Piccolo {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 142

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: Piccolo
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 39.5 bits (91), Expect = 1e-04
 Identities = 16/105 (15%), Positives = 38/105 (36%), Gaps = 7/105 (6%)

Query: 7   LDLNLISAKHLKDVHLISKMDVYAVVSISGDH---TIKKQKVKSHVDRSGGSNPTWNFPI 63
           L ++++ A++L         D +  V +        + +     +  R+     + N   
Sbjct: 20  LIIHILQARNLVPRDNNGYSDPFVKVYLLPGRGQVMVVQNASAEYKRRTKYVQKSLNPEW 79

Query: 64  KFTFNQ---SLAQQNRLTLDFKIK-SDGLLGDKTVGEVIVPIKEL 104
             T      S+ Q  + TL+  +   D    +  +GEV++ +   
Sbjct: 80  NQTVIYKSISMEQLMKKTLEVTVWDYDRFSSNDFLGEVLIDLSST 124

>d2zkmx2 b.7.1.1 (X:678-799) Phospholipase C-beta-2 {Human (Homo sapiens) [TaxId: 9606]} Length = 122

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: PLC-like (P variant)
domain: Phospholipase C-beta-2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.0 bits (88), Expect = 2e-04
 Identities = 18/98 (18%), Positives = 34/98 (34%), Gaps = 10/98 (10%)

Query: 7   LDLNLISAKHLKDVHLISKMDVYAVVSISG-DHTIKKQKVKSHVDRSGGSNPTWNFPIKF 65
           L + +IS + L +      +  Y  V + G     K++        +   NP W      
Sbjct: 3   LSITVISGQFLSE----RSVRTYVEVELFGLPGDPKRRYRTKLSPSTNSINPVWKEEPFV 58

Query: 66  TFNQSLAQQNRLTLDFKIKSDGLLGDKTVGEVIVPIKE 103
                +      +L   +  +   G+K +G  I+PI  
Sbjct: 59  FEK--ILMPELASLRVAVMEE---GNKFLGHRIIPINA 91

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	305
d1wfja_	136	C2 domain protein At1g63220 {Thale cress (Arabidop	99.9
d2ep6a1	126	Multiple C2 and transmembrane domain-containing pr	99.89
d1qasa2	131	PI-specific phospholipase C isozyme D1 (PLC-D1), C	99.85
d2nq3a1	133	E3 ubiquitin-protein ligase Itchy {Human (Homo sap	99.84
d1rlwa_	126	Domain from cytosolic phospholipase A2 {Human (Hom	99.84
d1gmia_	136	Domain from protein kinase C epsilon {Rat (Rattus	99.83
d1a25a_	132	C2 domain from protein kinase c (beta) {Rat (Rattu	99.79
d1rsya_	143	Synaptogamin I {Rat (Rattus norvegicus) [TaxId: 10	99.78
d1dqva1	130	Synaptotagmin III {Rat (Rattus norvegicus) [TaxId:	99.77
d2cjta1	128	Unc-13 homolog A {Rat (Rattus norvegicus) [TaxId:	99.75
d2bwqa1	125	Regulating synaptic membrane exocytosis protein, r	99.75
d1ugka_	138	Synaptotagmin IV {Human (Homo sapiens) [TaxId: 960	99.74
d1rh8a_	142	Piccolo {Rat (Rattus norvegicus) [TaxId: 10116]}	99.73
d1wfma_	138	Synaptotagmin XIII {Human (Homo sapiens) [TaxId: 9	99.7
d1uowa_	157	Synaptogamin I {Rat (Rattus norvegicus) [TaxId: 10	99.69
d2cm5a1	137	C2b-domain of rabphilin {Rat (Rattus norvegicus) [	99.69
d2zkmx2	122	Phospholipase C-beta-2 {Human (Homo sapiens) [TaxI	99.67
d1w15a_	138	Synaptotagmin IV {Rat (Rattus norvegicus) [TaxId:	99.66
d1bdya_	123	Domain from protein kinase C delta {Rat (Rattus no	99.66
d1dqva2	145	Synaptotagmin III {Rat (Rattus norvegicus) [TaxId:	99.6
d1e7ua2	174	Phoshoinositide 3-kinase (PI3K) {Pig (Sus scrofa)	96.62
d2yrba1	142	Fantom {Human (Homo sapiens) [TaxId: 9606]}	95.88

>d1wfja_ b.7.1.2 (A:) C2 domain protein At1g63220 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: C2 domain protein At1g63220
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=99.90  E-value=5e-24  Score=171.57  Aligned_cols=124  Identities=28%  Similarity=0.453  Sum_probs=105.7

Q ss_pred             CccceEEEEEEEecCCCCCCCCCCCCcEEEEEEecCCCCCCceEEeEecCCCCCCCeeeceEEEEeccchhccCceEEEE
Q 021949            2 ASYRALDLNLISAKHLKDVHLISKMDVYAVVSISGDHTIKKQKVKSHVDRSGGSNPTWNFPIKFTFNQSLAQQNRLTLDF   81 (305)
Q Consensus         2 ~~~~~L~V~vvsA~dL~~~~~~gk~dpYv~v~l~~~~~~~~~~~kT~v~k~~~~nP~Wne~f~f~v~~~~~~~~~~~L~v   81 (305)
                      ...++|+|+|++|++|++.+.++++||||++++..      .+++|+++++++.||+|||+|.|.+....     ..|+|
T Consensus         7 ~p~G~L~V~v~~a~~L~~~d~~g~~Dpyv~v~~~~------~~~~t~~~~~~~~nP~Wne~f~f~v~~~~-----~~L~v   75 (136)
T d1wfja_           7 GPHGTLEVVLVSAKGLEDADFLNNMDPYVQLTCRT------QDQKSNVAEGMGTTPEWNETFIFTVSEGT-----TELKA   75 (136)
T ss_dssp             CCEEEEEEEEEEEEECSSCCSSCSSCCCEEEESSS------CEEECCCCTTCCSSCEEEEEEEEEEESSC-----CEEEE
T ss_pred             CCcEEEEEEEEEeeCCCCCCCCCCCCccEEEEEee------eeEEEEEEecCCCcEEEeeEEEEEEcCcc-----ceEEE
Confidence            35789999999999999999999999999999976      57888888876899999999999997643     47999


Q ss_pred             EEEecCCC-CCcceeEEEEeCcccccccCCCCCCCCCcceEEEEEeecCCCCCccEEEEEEEEecc
Q 021949           82 KIKSDGLL-GDKTVGEVIVPIKELLDSSSSSSSGDAKSMKFVTYQVRSSSGKPKGELHFSYKFSEP  146 (305)
Q Consensus        82 ~V~d~~~~-~d~~IG~~~vpL~~l~~~~~~~~~~~g~~~~~~~~~l~~~~g~~~G~l~lsl~~~~~  146 (305)
                      +|||++.+ .|++||++.|+|.++....         .....|+.+.. +++.+|+|+|+|+|.+.
T Consensus        76 ~V~d~d~~~~d~~iG~~~i~L~~l~~~~---------~~~~~~~~l~~-~~~~~G~i~l~l~~~p~  131 (136)
T d1wfja_          76 KIFDKDVGTEDDAVGEATIPLEPVFVEG---------SIPPTAYNVVK-DEEYKGEIWVALSFKPS  131 (136)
T ss_dssp             EECCSSSCTTTCCSEEEEEESHHHHHHS---------EEEEEEEEEEE-TTEEEEEEEEEEEEEEC
T ss_pred             EEEEecCCCCCCEEEEEEEEhHHhcccC---------CcCcEEEEecC-CCccCEEEEEEEEEEeC
Confidence            99999988 7899999999999987533         13466788875 46778999999999864

>d2ep6a1 b.7.1.1 (A:92-217) Multiple C2 and transmembrane domain-containing protein 2, MCTP2 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: PLC-like (P variant)
domain: Multiple C2 and transmembrane domain-containing protein 2, MCTP2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.89  E-value=2.7e-23  Score=165.13  Aligned_cols=120  Identities=16%  Similarity=0.295  Sum_probs=101.1

Q ss_pred             CCccceEEEEEEEecCCCCCCCCCCCCcEEEEEEecCCCCCCceEEeEecCCCCCCCeeeceEEEEeccchhccCceEEE
Q 021949            1 MASYRALDLNLISAKHLKDVHLISKMDVYAVVSISGDHTIKKQKVKSHVDRSGGSNPTWNFPIKFTFNQSLAQQNRLTLD   80 (305)
Q Consensus         1 m~~~~~L~V~vvsA~dL~~~~~~gk~dpYv~v~l~~~~~~~~~~~kT~v~k~~~~nP~Wne~f~f~v~~~~~~~~~~~L~   80 (305)
                      +.+.+.|+|+|++|++|...+.++++||||++++++      .+++|+++++ +.||.|||+|.|.+....     ..|.
T Consensus         2 ~~~~G~L~V~v~~A~~L~~~d~~g~~Dpyv~v~~~~------~~~~T~~~~~-t~nP~wne~f~f~v~~~~-----~~L~   69 (126)
T d2ep6a1           2 VKDVGILQVKVLKAADLLAADFSGKSDPFCLLELGN------DRLQTHTVYK-NLNPEWNKVFTFPIKDIH-----DVLE   69 (126)
T ss_dssp             CCCSEEEEEEEEEEESCCCSSSSSCCCEEEEEEETT------EEEECCCCSS-CSSCCCCEEEEEEESCTT-----CEEE
T ss_pred             CCccEEEEEEEEEeECCCCCCCCCCcCeEEEEEcCC------eEEEEEeeCC-ceeEEEEEEEEEEEeccC-----ceeE
Confidence            457899999999999999999899999999999975      6889999887 899999999999997543     4899


Q ss_pred             EEEEecCCC-CCcceeEEEEeCcccccccCCCCCCCCCcceEEEEEee--cCCCCCccEEEEEEEEe
Q 021949           81 FKIKSDGLL-GDKTVGEVIVPIKELLDSSSSSSSGDAKSMKFVTYQVR--SSSGKPKGELHFSYKFS  144 (305)
Q Consensus        81 v~V~d~~~~-~d~~IG~~~vpL~~l~~~~~~~~~~~g~~~~~~~~~l~--~~~g~~~G~l~lsl~~~  144 (305)
                      |+|||++.+ .|++||++.|+|.++....            ..|+.|.  +.+++.+|+|+|+++|.
T Consensus        70 i~V~d~~~~~~d~~lG~~~i~l~~l~~~~------------~~~~~l~~~~~~~~~~G~i~l~~~~i  124 (126)
T d2ep6a1          70 VTVFDEDGDKPPDFLGKVAIPLLSIRDGQ------------PNCYVLKNKDLEQAFKGVIYLEMDLI  124 (126)
T ss_dssp             EEEEEEETTEEEEECCBCEEEGGGCCSSC------------CEECCCBCSCTTSCCSSEEEEEEEEE
T ss_pred             EEEEEccCCcCcceEEEEEEEHHHCCCCC------------ceEEEccccCCCCceeEEEEEEEEEE
Confidence            999999888 6899999999999986422            2345444  34567789999999885

>d1qasa2 b.7.1.1 (A:626-756) PI-specific phospholipase C isozyme D1 (PLC-D1), C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: PLC-like (P variant)
domain: PI-specific phospholipase C isozyme D1 (PLC-D1), C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.85  E-value=1.9e-20  Score=149.61  Aligned_cols=123  Identities=18%  Similarity=0.297  Sum_probs=96.7

Q ss_pred             ceEEEEEEEecCCCC--CCCCCCCCcEEEEEEecCCCCCCceEEeEecCCCCCCCeeeceEEEEeccchhccCceEEEEE
Q 021949            5 RALDLNLISAKHLKD--VHLISKMDVYAVVSISGDHTIKKQKVKSHVDRSGGSNPTWNFPIKFTFNQSLAQQNRLTLDFK   82 (305)
Q Consensus         5 ~~L~V~vvsA~dL~~--~~~~gk~dpYv~v~l~~~~~~~~~~~kT~v~k~~~~nP~Wne~f~f~v~~~~~~~~~~~L~v~   82 (305)
                      ..|+|+|++|++|..  .+..+++||||+|++.+.... ..+++|+++++++.||.|||+|.|.+.....    ..|.|+
T Consensus         4 ~~l~V~Vi~a~~L~~~~~~~~~~~DPyV~v~l~g~~~~-~~~~~T~~v~~~~~nP~wne~f~f~~~~~~~----~~L~~~   78 (131)
T d1qasa2           4 ERLRVRIISGQQLPKVNKNKNSIVDPKVIVEIHGVGRD-TGSRQTAVITNNGFNPRWDMEFEFEVTVPDL----ALVRFM   78 (131)
T ss_dssp             EEEEEEEEEEESCCCCC-----CCCEEEEEEEESSTTT-CEEEECCCCSSCSSSCEEEEEEEEEESCGGG----CEEEEE
T ss_pred             EEEEEEEEEeeCCCCCCCCCCCCcCeEEEEEEccCCCC-cEEEEEEEEecccCCceEEEEEEEEEEcchh----ceEEEE
Confidence            579999999999964  445688999999999754322 4788999988867899999999999876543    479999


Q ss_pred             EEecCCC-CCcceeEEEEeCcccccccCCCCCCCCCcceEEEEEeecCCCCC--ccEEEEEEEEec
Q 021949           83 IKSDGLL-GDKTVGEVIVPIKELLDSSSSSSSGDAKSMKFVTYQVRSSSGKP--KGELHFSYKFSE  145 (305)
Q Consensus        83 V~d~~~~-~d~~IG~~~vpL~~l~~~~~~~~~~~g~~~~~~~~~l~~~~g~~--~G~l~lsl~~~~  145 (305)
                      |||++.+ .|++||++.|+|+++.. +            ..|++|++..++.  .++|.+.|++.+
T Consensus        79 V~D~d~~~~d~~iG~~~i~l~~l~~-g------------~~~~~L~~~~g~~~~~~~L~v~i~~~d  131 (131)
T d1qasa2          79 VEDYDSSSKNDFIGQSTIPWNSLKQ-G------------YRHVHLLSKNGDQHPSATLFVKISIQD  131 (131)
T ss_dssp             EEECCTTTCCEEEEEEEEEGGGBCC-E------------EEEEEEECTTSCEEEEEEEEEEEEEEC
T ss_pred             EEEecCCCCCcEEEEEEEEEeccCC-C------------CEEEECCCCCcCCCCCCEEEEEEEEEC
Confidence            9999988 68899999999999863 2            4578999877764  567888887753

>d2nq3a1 b.7.1.1 (A:13-145) E3 ubiquitin-protein ligase Itchy {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: PLC-like (P variant)
domain: E3 ubiquitin-protein ligase Itchy
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.84  E-value=1.4e-20  Score=150.96  Aligned_cols=126  Identities=22%  Similarity=0.288  Sum_probs=98.6

Q ss_pred             CCccceEEEEEEEecCCCCCCCCCCCCcEEEEEEecCCCCCCceEEeEecCCCCCCCeeeceEEEEeccchhccCceEEE
Q 021949            1 MASYRALDLNLISAKHLKDVHLISKMDVYAVVSISGDHTIKKQKVKSHVDRSGGSNPTWNFPIKFTFNQSLAQQNRLTLD   80 (305)
Q Consensus         1 m~~~~~L~V~vvsA~dL~~~~~~gk~dpYv~v~l~~~~~~~~~~~kT~v~k~~~~nP~Wne~f~f~v~~~~~~~~~~~L~   80 (305)
                      |+....|+|+|++|++|++.+.++++||||++++++      ++++|+++++ +.||.|||.|.|.+...      ..|+
T Consensus         2 ~~~~~~L~v~v~~A~~~~~~~~~~~~dpyv~v~~~~------~~~kT~v~~~-t~nP~wne~f~f~~~~~------~~l~   68 (133)
T d2nq3a1           2 LTMKSQLQITVISAKLKENKKNWFGPSPYVEVTVDG------QSKKTEKCNN-TNSPKWKQPLTVIVTPV------SKLH   68 (133)
T ss_dssp             CSCCEEEEEEEEEEEECCCC--CCCCCEEEEEEETT------EEEECCCCSS-CSSCEEEEEEEEEECTT------CEEE
T ss_pred             CCcceEEEEEEEEeECCCcCCCCCCcCeEEEEEECC------eEEeeEEEEe-cccEEEcceEEEEEEec------ceeE
Confidence            345688999999999999988889999999999976      6889999876 89999999999998653      3799


Q ss_pred             EEEEecCCC-CCcceeEEEEeCcccccccCCCCCCCCCcceEEEEEeecCCC--CCccEEEEEEEEe
Q 021949           81 FKIKSDGLL-GDKTVGEVIVPIKELLDSSSSSSSGDAKSMKFVTYQVRSSSG--KPKGELHFSYKFS  144 (305)
Q Consensus        81 v~V~d~~~~-~d~~IG~~~vpL~~l~~~~~~~~~~~g~~~~~~~~~l~~~~g--~~~G~l~lsl~~~  144 (305)
                      |+|||++.+ .|++||++.|+|.+++...    .+. .+..+.++.+.....  ...|+|.|.|...
T Consensus        69 ~~V~d~d~~~~d~~iG~~~i~L~~l~~~~----~~~-~~~~~~~l~l~~~~~~~~~~G~L~v~l~~~  130 (133)
T d2nq3a1          69 FRVWSHQTLKSDVLLGTAALDIYETLKSN----NMK-LEEVVVTLQLGGDKEPTETIGDLSICLDGL  130 (133)
T ss_dssp             EEEEECCSSSCCEEEEEEEEEHHHHHHHT----TTE-ESSEEEEEEEEESSCTTSEEEEEEEEEESE
T ss_pred             EEEEEccCCCCCceEEEEEEEHHHhhhhc----CCc-eeeEEEEEecCCCCCCceEEEEEEEEEeeE
Confidence            999999988 7899999999999997543    221 122455666665433  4568888877643

>d1rlwa_ b.7.1.1 (A:) Domain from cytosolic phospholipase A2 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: PLC-like (P variant)
domain: Domain from cytosolic phospholipase A2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.84  E-value=7.5e-21  Score=150.54  Aligned_cols=121  Identities=15%  Similarity=0.256  Sum_probs=98.3

Q ss_pred             cceEEEEEEEecCCCCCC---CCCCCCcEEEEEEecCCCCCCceEEeEecCCCCCCCeeeceEEEEeccchhccCceEEE
Q 021949            4 YRALDLNLISAKHLKDVH---LISKMDVYAVVSISGDHTIKKQKVKSHVDRSGGSNPTWNFPIKFTFNQSLAQQNRLTLD   80 (305)
Q Consensus         4 ~~~L~V~vvsA~dL~~~~---~~gk~dpYv~v~l~~~~~~~~~~~kT~v~k~~~~nP~Wne~f~f~v~~~~~~~~~~~L~   80 (305)
                      ..+|+|+|++|++|+...   .+++.||||++++.+..   ..++||+++++ +.||.|||+|.|.+....    ...|+
T Consensus         2 s~~l~V~v~~a~~L~~~~~~d~~~~~Dpyv~v~l~~~~---~~~~~T~~~~~-t~nP~wne~f~f~i~~~~----~~~L~   73 (126)
T d1rlwa_           2 SHKFTVVVLRATKVTKGAFGDMLDTPDPYVELFISTTP---DSRKRTRHFNN-DINPVWNETFEFILDPNQ----ENVLE   73 (126)
T ss_dssp             CEEEEEEEEEEESCCSCHHHHHHCCCCEEEEEECTTST---TCCEECCCCTT-CSSCEEEEEEEEEECTTS----CCEEE
T ss_pred             CcEEEEEEEEccCCCCccccccCCCCCcEEEEEECCcc---cceeEeeecCC-CccceeceeeeecccCcc----cCcEE
Confidence            468999999999998743   45789999999997543   36789999877 799999999999996543    25799


Q ss_pred             EEEEecCCCCCcceeEEEEeCcccccccCCCCCCCCCcceEEEEEeecCCCCCccEEEEEEEEec
Q 021949           81 FKIKSDGLLGDKTVGEVIVPIKELLDSSSSSSSGDAKSMKFVTYQVRSSSGKPKGELHFSYKFSE  145 (305)
Q Consensus        81 v~V~d~~~~~d~~IG~~~vpL~~l~~~~~~~~~~~g~~~~~~~~~l~~~~g~~~G~l~lsl~~~~  145 (305)
                      |+|||++..+|++||++.|+|.+|..+.          ....||.|..   ..+|.|+|++++.+
T Consensus        74 v~V~d~d~~~d~~lG~~~i~L~~l~~~~----------~~~~~~~L~~---~~~g~i~~~l~~~~  125 (126)
T d1rlwa_          74 ITLMDANYVMDETLGTATFTVSSMKVGE----------KKEVPFIFNQ---VTEMVLEMSLEVAS  125 (126)
T ss_dssp             EEEEECCSSCCEEEEEEEEEGGGSCTTC----------EEEEEEEETT---TEEEEEEEEEECCC
T ss_pred             EEEEECCCCCCCeEEEEEEEHHHccCCC----------eEEEEEEccC---CCeEEEEEEEEEEe
Confidence            9999998889999999999999986432          3577999954   34688888888754

>d1gmia_ b.7.1.1 (A:) Domain from protein kinase C epsilon {Rat (Rattus rattus) [TaxId: 10117]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: PLC-like (P variant)
domain: Domain from protein kinase C epsilon
species: Rat (Rattus rattus) [TaxId: 10117]

Probab=99.83  E-value=3.4e-20  Score=149.13  Aligned_cols=119  Identities=15%  Similarity=0.221  Sum_probs=97.0

Q ss_pred             ccceEEEEEEEecCCCCCC-----------CCCCCCcEEEEEEecCCCCCCceEEeEecCCCCCCCeeeceEEEEeccch
Q 021949            3 SYRALDLNLISAKHLKDVH-----------LISKMDVYAVVSISGDHTIKKQKVKSHVDRSGGSNPTWNFPIKFTFNQSL   71 (305)
Q Consensus         3 ~~~~L~V~vvsA~dL~~~~-----------~~gk~dpYv~v~l~~~~~~~~~~~kT~v~k~~~~nP~Wne~f~f~v~~~~   71 (305)
                      -.+.|+|+|++|++|+..+           ..+.+||||+|+++.     ....+|+++++ +.||.|||+|.|.+.+. 
T Consensus         4 ~~G~L~v~I~~A~~L~~~~~~~~~~~~~~~~~~~~DPYv~v~l~~-----~~~~~T~~~~~-t~~P~Wne~f~f~v~~~-   76 (136)
T d1gmia_           4 FNGLLKIKICEAVSLKPTAWSLRDAVGPRPQTFLLDPYIALNVDD-----SRIGQTATKQK-TNSPAWHDEFVTDVCNG-   76 (136)
T ss_dssp             EEEEEEEEEEEEESCCCCHHHHCC-CCSSCCCCCCCEEEEEEETT-----EEEEECCCCSS-CSSCEEEEEEEEEEEEE-
T ss_pred             EEEEEEEEEEEeECCCcccccccccccccCCCCCcCcEEEEEeCC-----CcCcEeeEEcC-CCCccCccEEEEEEecC-
Confidence            4689999999999998642           346799999999975     24567888776 79999999999999643 


Q ss_pred             hccCceEEEEEEEecCCC-CCcceeEEEEeCcccccccCCCCCCCCCcceEEEEEeecCCCCCccEEEEEEEEecc
Q 021949           72 AQQNRLTLDFKIKSDGLL-GDKTVGEVIVPIKELLDSSSSSSSGDAKSMKFVTYQVRSSSGKPKGELHFSYKFSEP  146 (305)
Q Consensus        72 ~~~~~~~L~v~V~d~~~~-~d~~IG~~~vpL~~l~~~~~~~~~~~g~~~~~~~~~l~~~~g~~~G~l~lsl~~~~~  146 (305)
                           ..|+|+|||++.+ +|++||+++|+|.++....    .    .....|+.|.     +.|+|+|.|+|.+.
T Consensus        77 -----~~l~i~V~d~~~~~~d~~iG~~~i~l~~l~~~~----~----~~~~~w~~L~-----p~G~v~l~v~~~~~  134 (136)
T d1gmia_          77 -----RKIELAVFHDAPIGYDDFVANCTIQFEELLQNG----S----RHFEDWIDLE-----PEGKVYVIIDLSGS  134 (136)
T ss_dssp             -----CEEEEEEEECCSSSSCEEEEEEEEEHHHHTSTT----C----SEEEEEEECB-----SSCEEEEEEEEEEE
T ss_pred             -----CceEEEEEEecCCCCceeEEEEEEEHHHhhhcC----C----cceeEEEeCC-----CCcEEEEEEEEEeC
Confidence                 4899999999988 7899999999999998543    1    1346788885     47999999999864

>d1a25a_ b.7.1.2 (A:) C2 domain from protein kinase c (beta) {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: C2 domain from protein kinase c (beta)
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.79  E-value=6.1e-19  Score=140.70  Aligned_cols=109  Identities=21%  Similarity=0.224  Sum_probs=90.8

Q ss_pred             cceEEEEEEEecCCCCCCCCCCCCcEEEEEEecCCCCCCceEEeEecCCCCCCCeeeceEEEEeccchhccCceEEEEEE
Q 021949            4 YRALDLNLISAKHLKDVHLISKMDVYAVVSISGDHTIKKQKVKSHVDRSGGSNPTWNFPIKFTFNQSLAQQNRLTLDFKI   83 (305)
Q Consensus         4 ~~~L~V~vvsA~dL~~~~~~gk~dpYv~v~l~~~~~~~~~~~kT~v~k~~~~nP~Wne~f~f~v~~~~~~~~~~~L~v~V   83 (305)
                      .++|.|+|++|+||...+..+.+||||+|++...... ..+++|+++++ +.||+|||+|.|.+.....   ...|+|+|
T Consensus        14 ~~~L~V~V~~a~~L~~~d~~g~~DpYv~v~l~~~~~~-~~~~kT~v~~~-t~nP~wne~f~f~v~~~~~---~~~L~i~V   88 (132)
T d1a25a_          14 REVLIVVVRDAKNLVPMDPNGLSDPYVKLKLIPDPKS-ESKQKTKTIKC-SLNPEWNETFRFQLKESDK---DRRLSVEI   88 (132)
T ss_dssp             SSEEEEEEEEEESCCCCSTTSCCCEEEEEEEESCTTC-SSCEECCCCSS-CSSCEEEEEEEEECCSGGG---GCEEEEEE
T ss_pred             CCEEEEEEEeeeCCCCCCCCCCcCeEEEEEEccCCCC-ccccEEeeecC-CCCCccceEEEEEeEcccc---CCEEeEEE
Confidence            4689999999999999888899999999999764332 46889999887 8999999999999865432   24799999


Q ss_pred             EecCCC-CCcceeEEEEeCcccccccCCCCCCCCCcceEEEEEeec
Q 021949           84 KSDGLL-GDKTVGEVIVPIKELLDSSSSSSSGDAKSMKFVTYQVRS  128 (305)
Q Consensus        84 ~d~~~~-~d~~IG~~~vpL~~l~~~~~~~~~~~g~~~~~~~~~l~~  128 (305)
                      ||++.+ +|++||++.|+|.+|....           ...||.|..
T Consensus        89 ~d~d~~~~d~~iG~~~i~l~~l~~~~-----------~~~W~~L~~  123 (132)
T d1a25a_          89 WDWDLTSRNDFMGSLSFGISELQKAG-----------VDGWFKLLS  123 (132)
T ss_dssp             EECCSSSCCEEEEEEEEEHHHHTTCC-----------EEEEEECBC
T ss_pred             EecCCCCCCcEeEEEEEeHHHcCCCC-----------CCeEEECCC
Confidence            999888 7899999999999986422           367999975

>d1rsya_ b.7.1.2 (A:) Synaptogamin I {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: Synaptogamin I
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.78  E-value=1.3e-18  Score=140.60  Aligned_cols=108  Identities=21%  Similarity=0.231  Sum_probs=90.2

Q ss_pred             cceEEEEEEEecCCCCCCCCCCCCcEEEEEEecCCCCCCceEEeEecCCCCCCCeeeceEEEEeccchhccCceEEEEEE
Q 021949            4 YRALDLNLISAKHLKDVHLISKMDVYAVVSISGDHTIKKQKVKSHVDRSGGSNPTWNFPIKFTFNQSLAQQNRLTLDFKI   83 (305)
Q Consensus         4 ~~~L~V~vvsA~dL~~~~~~gk~dpYv~v~l~~~~~~~~~~~kT~v~k~~~~nP~Wne~f~f~v~~~~~~~~~~~L~v~V   83 (305)
                      ..+|+|+|++|++|+..+..+..||||+|++.+..   ..+++|+++++ +.||+|||+|.|.+....+  ....|+|+|
T Consensus        33 ~~~L~V~V~~a~~L~~~~~~g~~dpyV~v~l~~~~---~~~~kT~~~~~-t~~P~wne~f~f~i~~~~l--~~~~L~i~V  106 (143)
T d1rsya_          33 NNQLLVGIIQAAELPALDMGGTSDPYVKVFLLPDK---KKKFETKVHRK-TLNPVFNEQFTFKVPYSEL--GGKTLVMAV  106 (143)
T ss_dssp             TTEEEEEEEEEESCCCCSTTSCCCEEEEEEEETTC---CSCEECCCCTT-CSSCEEEEEEEECCCHHHH--TTCEEEEEE
T ss_pred             CCEEEEEEEEccCCCCCCCCCCCCeEEEEEEcCCC---CeeEEEEEecc-ccCcceeeeeEEEEEeecc--CCceEEEEE
Confidence            46899999999999988888999999999997643   36789999887 8999999999999865543  235899999


Q ss_pred             EecCCC-CCcceeEEEEeCcccccccCCCCCCCCCcceEEEEEee
Q 021949           84 KSDGLL-GDKTVGEVIVPIKELLDSSSSSSSGDAKSMKFVTYQVR  127 (305)
Q Consensus        84 ~d~~~~-~d~~IG~~~vpL~~l~~~~~~~~~~~g~~~~~~~~~l~  127 (305)
                      ||++.+ ++++||++.|+|.++....          ....||.|.
T Consensus       107 ~d~d~~~~~~~iG~~~i~L~~~~~~~----------~~~~W~~L~  141 (143)
T d1rsya_         107 YDFDRFSKHDIIGEFKVPMNTVDFGH----------VTEEWRDLQ  141 (143)
T ss_dssp             EECCSSSCCEEEEEEEEEGGGCCCSS----------CEEEEEECB
T ss_pred             EEcCCCCCCcEEEEEEEEchhccCCC----------CCccEEeCC
Confidence            999888 7889999999999986422          246799886

>d1dqva1 b.7.1.2 (A:295-424) Synaptotagmin III {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: Synaptotagmin III
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.77  E-value=8.7e-19  Score=139.53  Aligned_cols=112  Identities=17%  Similarity=0.193  Sum_probs=89.3

Q ss_pred             ccceEEEEEEEecCCCCCCCCCCCCcEEEEEEecCCCCCCceEEeEecCCCCCCCeeeceEEEEeccchhccCceEEEEE
Q 021949            3 SYRALDLNLISAKHLKDVHLISKMDVYAVVSISGDHTIKKQKVKSHVDRSGGSNPTWNFPIKFTFNQSLAQQNRLTLDFK   82 (305)
Q Consensus         3 ~~~~L~V~vvsA~dL~~~~~~gk~dpYv~v~l~~~~~~~~~~~kT~v~k~~~~nP~Wne~f~f~v~~~~~~~~~~~L~v~   82 (305)
                      ..+.|+|+|++|++|...+..++.||||++++..+.   ..+++|+++++ +.||+|||+|.|.+....+.  ...|+|+
T Consensus        16 ~~~~L~V~V~~a~~L~~~~~~g~~dpyv~v~l~~~~---~~~~kT~v~~~-t~~P~wne~f~f~v~~~~~~--~~~L~v~   89 (130)
T d1dqva1          16 GSDQLVVRILQALDLPAKDSNGFSDPYVKIYLLPDR---KKKFQTKVHRK-TLNPIFNETFQFSVPLAELA--QRKLHFS   89 (130)
T ss_dssp             SSCEEEEEEEEEECCCCCSTTSCCCEEEEEECTTST---TSCEECCCCCS-CSSCEEEEEEEEECCGGGGS--SCCCEEE
T ss_pred             CCCEEEEEEEeeeCCccccCCCCcceEEEEEEccCC---CceEeceeEcC-CCCeeeeeEEEEEEchHHcC--CCeEEEE
Confidence            457899999999999998888999999999996543   35789999887 79999999999998765443  3579999


Q ss_pred             EEecCCC-CCcceeEEEEeCcccccccCCCCCCCCCcceEEEEEeec
Q 021949           83 IKSDGLL-GDKTVGEVIVPIKELLDSSSSSSSGDAKSMKFVTYQVRS  128 (305)
Q Consensus        83 V~d~~~~-~d~~IG~~~vpL~~l~~~~~~~~~~~g~~~~~~~~~l~~  128 (305)
                      |||++.+ +|++||++.|++...+...    ..    ....||.|.+
T Consensus        90 V~d~~~~~~d~~iG~~~i~~~~~l~~~----~~----~~~~W~~L~~  128 (130)
T d1dqva1          90 VYDFDRFSRHDLIGQVVLDNLLELAEQ----PP----DRPLWRDILE  128 (130)
T ss_dssp             EEECCSSSCCCEEEEEECCCTTGGGSS----CS----SCCCCEECBC
T ss_pred             EEEcCCCCCCceEEEEEECchhhhhcC----CC----CCcEEEeccc
Confidence            9999887 7899999999876544322    11    1345888874

>d2cjta1 b.7.1.1 (A:1-128) Unc-13 homolog A {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: PLC-like (P variant)
domain: Unc-13 homolog A
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.75  E-value=2.7e-18  Score=136.48  Aligned_cols=101  Identities=23%  Similarity=0.323  Sum_probs=82.7

Q ss_pred             ceEEEEEEEecCCCCCCCCCCCCcEEEEEEecCCCCCCceEEeEecCCCCCCCeeeceEEEEeccchhccCceEEEEEEE
Q 021949            5 RALDLNLISAKHLKDVHLISKMDVYAVVSISGDHTIKKQKVKSHVDRSGGSNPTWNFPIKFTFNQSLAQQNRLTLDFKIK   84 (305)
Q Consensus         5 ~~L~V~vvsA~dL~~~~~~gk~dpYv~v~l~~~~~~~~~~~kT~v~k~~~~nP~Wne~f~f~v~~~~~~~~~~~L~v~V~   84 (305)
                      ..|+|+|++|++|+..+   ++||||++++++      .+.+|.++++  .||.|||+|.|.+....     ..|.|+||
T Consensus         2 ~~L~V~v~~a~~l~~~~---~~dpYv~l~~~~------~k~~T~~~k~--~nP~Wne~f~f~v~~~~-----~~L~v~V~   65 (128)
T d2cjta1           2 SLLCVGVKKAKFDGAQE---KFNTYVTLKVQN------VKSTTIAVRG--SQPSWEQDFMFEINRLD-----LGLTVEVW   65 (128)
T ss_dssp             EEEEEEEEEEECSSCGG---GCEEEEEEEETT------EEEECCCEES--SSCEEEEEEEEEECCCS-----SEEEEEEE
T ss_pred             eEEEEEEEEEECCCCCC---CcCeEEEEEeCC------EEEEEEEecC--CCCeEEEEEEEeecccc-----ceEEEEEE
Confidence            57999999999999865   689999999975      6888888764  59999999999997653     47999999


Q ss_pred             ecCCCCCcceeEEEEeCcccccccCCCCCCCCCcceEEEEEeecC
Q 021949           85 SDGLLGDKTVGEVIVPIKELLDSSSSSSSGDAKSMKFVTYQVRSS  129 (305)
Q Consensus        85 d~~~~~d~~IG~~~vpL~~l~~~~~~~~~~~g~~~~~~~~~l~~~  129 (305)
                      |++.+.|++||++.|+|+++....    ..    ....||.|..+
T Consensus        66 d~~~~~d~~lG~~~I~L~~l~~~~----~~----~~~~W~~L~~~  102 (128)
T d2cjta1          66 NKGLIWDTMVGTVWIPLRTIRQSN----EE----GPGEWLTLDSQ  102 (128)
T ss_dssp             ECCSSCEEEEEEEEEEGGGSCBCS----SC----CCCEEEECBC-
T ss_pred             eCCCcCCcceEEEEEEehhhccCC----CC----CCCeeEECCcc
Confidence            998889999999999999997543    11    23568888653

>d2bwqa1 b.7.1.2 (A:729-853) Regulating synaptic membrane exocytosis protein, rim2 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: Regulating synaptic membrane exocytosis protein, rim2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.75  E-value=6.8e-18  Score=133.23  Aligned_cols=110  Identities=15%  Similarity=0.235  Sum_probs=85.7

Q ss_pred             ccceEEEEEEEecCCCCCCCCCCCCcEEEEEEecCCCCCCceEEeEecCCCCCCCeeeceEEEE-eccchhccCceEEEE
Q 021949            3 SYRALDLNLISAKHLKDVHLISKMDVYAVVSISGDHTIKKQKVKSHVDRSGGSNPTWNFPIKFT-FNQSLAQQNRLTLDF   81 (305)
Q Consensus         3 ~~~~L~V~vvsA~dL~~~~~~gk~dpYv~v~l~~~~~~~~~~~kT~v~k~~~~nP~Wne~f~f~-v~~~~~~~~~~~L~v   81 (305)
                      ..++|+|+|++|+||...+..+..||||+|++..+... ..++||+++++ +.||+|||+|.|. +....+  ....|.|
T Consensus        12 ~~~~L~V~V~~a~~L~~~~~~~~~dpyVkv~l~~~~~~-~~~~kT~~~~~-t~~P~wne~f~f~~~~~~~l--~~~~L~i   87 (125)
T d2bwqa1          12 VGHQLIVTILGAKDLPSREDGRPRNPYVKIYFLPDRSD-KNKRRTKTVKK-TLEPKWNQTFIYSPVHRREF--RERMLEI   87 (125)
T ss_dssp             TTTEEEEEEEEEESCCCCTTSCCBCEEEEEEEESSCSG-GGEEECCCCSS-BSSCEEEEEEEECSCCGGGG--GGCEEEE
T ss_pred             CCCEEEEEEEEeECCCCcCCCCCCCEEEEEEEeCCCCC-ccccccCEEcC-CCCCEEccEEEEeeeChhhc--CCCEEEE
Confidence            45789999999999998888889999999999754332 46789999887 8999999999997 544433  2358999


Q ss_pred             EEEecCCC---CCcceeEEEEeCcccccccCCCCCCCCCcceEEEEEee
Q 021949           82 KIKSDGLL---GDKTVGEVIVPIKELLDSSSSSSSGDAKSMKFVTYQVR  127 (305)
Q Consensus        82 ~V~d~~~~---~d~~IG~~~vpL~~l~~~~~~~~~~~g~~~~~~~~~l~  127 (305)
                      +|||.+.+   ++++||++.|+|+++....           ...||.|+
T Consensus        88 ~v~d~~~~~~~~~~~iG~~~i~l~~~~~~~-----------~~~Wy~L~  125 (125)
T d2bwqa1          88 TLWDQARVREEESEFLGEILIELETALLDD-----------EPHWYKLQ  125 (125)
T ss_dssp             EEEEC-------CEEEEEEEEEGGGCCCSS-----------CEEEEECC
T ss_pred             EEEECCCCCCCCCeeEEEEEEEchhcCCCC-----------CCEEEeCc
Confidence            99998865   3569999999999987533           25688874

>d1ugka_ b.7.1.2 (A:) Synaptotagmin IV {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: Synaptotagmin IV
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.74  E-value=1.9e-17  Score=132.97  Aligned_cols=98  Identities=27%  Similarity=0.374  Sum_probs=81.0

Q ss_pred             ccceEEEEEEEecCCCCCCCCCC-CCcEEEEEEecCCCCCCceEEeEecCCCCCCCeeeceEEEE-eccchhccCceEEE
Q 021949            3 SYRALDLNLISAKHLKDVHLISK-MDVYAVVSISGDHTIKKQKVKSHVDRSGGSNPTWNFPIKFT-FNQSLAQQNRLTLD   80 (305)
Q Consensus         3 ~~~~L~V~vvsA~dL~~~~~~gk-~dpYv~v~l~~~~~~~~~~~kT~v~k~~~~nP~Wne~f~f~-v~~~~~~~~~~~L~   80 (305)
                      ....|+|+|++|++|...+..+. +||||++++..+.   ..++||+++++ +.||.|||+|.|. +....+  ....|+
T Consensus        20 ~~~~L~V~V~~a~~L~~~d~~~~~~dpyV~v~l~~~~---~~~~kT~v~~~-t~nP~wne~f~f~~~~~~~l--~~~~L~   93 (138)
T d1ugka_          20 ERKAFVVNIKEARGLPAMDEQSMTSDPYIKMTILPEK---KHKVKTRVLRK-TLDPAFDETFTFYGIPYTQI--QELALH   93 (138)
T ss_dssp             GGTEEEEEEEEEESCCCCBTTTTBCEEEEEEEEETTT---CSEEECCCCSS-CSSCEEEEEEEEECCCSTTG--GGCEEE
T ss_pred             CCCEEEEEEEEecCCCCCCCCCCccceEEEEEEcCCC---CEeEeCeeEeC-CCCCceeeEEEEeeeCHHHc--ccceEE
Confidence            35689999999999998876654 7999999997643   46889999887 8999999999997 444333  235899


Q ss_pred             EEEEecCCC-CCcceeEEEEeCccccc
Q 021949           81 FKIKSDGLL-GDKTVGEVIVPIKELLD  106 (305)
Q Consensus        81 v~V~d~~~~-~d~~IG~~~vpL~~l~~  106 (305)
                      |+|||.+.+ +|++||++.|+|+++..
T Consensus        94 ~~V~d~d~~~~~~~iG~~~i~L~~~~~  120 (138)
T d1ugka_          94 FTILSFDRFSRDDIIGEVLIPLSGIEL  120 (138)
T ss_dssp             EEEEEECSSCCCCCCEEEEEECTTCCC
T ss_pred             EEEEECCCCCCCcEEEEEEEEcccccC
Confidence            999999887 78999999999999864

>d1rh8a_ b.7.1.2 (A:) Piccolo {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: Piccolo
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.73  E-value=2.3e-18  Score=138.64  Aligned_cols=114  Identities=14%  Similarity=0.194  Sum_probs=89.5

Q ss_pred             cceEEEEEEEecCCCCCCCCCCCCcEEEEEEecCCCCC--------CceEEeEecCCCCCCCeeeceEEEEe-ccchhcc
Q 021949            4 YRALDLNLISAKHLKDVHLISKMDVYAVVSISGDHTIK--------KQKVKSHVDRSGGSNPTWNFPIKFTF-NQSLAQQ   74 (305)
Q Consensus         4 ~~~L~V~vvsA~dL~~~~~~gk~dpYv~v~l~~~~~~~--------~~~~kT~v~k~~~~nP~Wne~f~f~v-~~~~~~~   74 (305)
                      .+.|+|+|++|++|...+..+..||||+|++.....+.        ..++||+++++ +.||.|||+|.|.+ ....+  
T Consensus        17 ~~~L~V~V~~A~~L~~~d~~g~~DpyV~v~l~~~~~~~~~~~~~~~~~~~kT~v~~~-t~nP~wne~f~f~~~~~~~~--   93 (142)
T d1rh8a_          17 LGNLIIHILQARNLVPRDNNGYSDPFVKVYLLPGRGQVMVVQNASAEYKRRTKYVQK-SLNPEWNQTVIYKSISMEQL--   93 (142)
T ss_dssp             TTEEEEEEEEEESCCCCSSSSCSCCEEEEEETTSSCCCEECCCCCHHHHTTTTTTHH-HHSCEEEEEEEECSCCHHHH--
T ss_pred             CCEEEEEEEEeECCCCcCCCCCCCcCEEEEEecCcccccccccCCCceeeeccCCcC-CCCceeEEEEEEeeeccccc--
Confidence            36899999999999999888999999999996433210        13467888887 79999999999974 33222  


Q ss_pred             CceEEEEEEEecCCC-CCcceeEEEEeCcccccccCCCCCCCCCcceEEEEEeecCC
Q 021949           75 NRLTLDFKIKSDGLL-GDKTVGEVIVPIKELLDSSSSSSSGDAKSMKFVTYQVRSSS  130 (305)
Q Consensus        75 ~~~~L~v~V~d~~~~-~d~~IG~~~vpL~~l~~~~~~~~~~~g~~~~~~~~~l~~~~  130 (305)
                      ....|.|+|||++.+ +|++||++.|+|.++....          ....||.|...+
T Consensus        94 ~~~~L~i~V~d~d~~~~~~~lG~~~i~L~~l~~~~----------~~~~W~~L~~~~  140 (142)
T d1rh8a_          94 MKKTLEVTVWDYDRFSSNDFLGEVLIDLSSTSHLD----------NTPRWYPLKEQT  140 (142)
T ss_dssp             TTCEEEEEEEEECSSSCEEEEEEEEEETTSCGGGT----------TCCEEEECBCCC
T ss_pred             CCCEEEEEEEEecCCCCCeeeEEEEEEhHHcCCCC----------CceEEEECcCcC
Confidence            336899999999888 7889999999999987533          235799998653

>d1wfma_ b.7.1.2 (A:) Synaptotagmin XIII {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: Synaptotagmin XIII
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.70  E-value=6e-17  Score=130.06  Aligned_cols=108  Identities=10%  Similarity=0.106  Sum_probs=86.8

Q ss_pred             ccceEEEEEEEecCCCCCCCCCCCCcEEEEEEecCCCCCCceEEeEecCCCCCCCeeeceEEEEeccchhccCceEEEEE
Q 021949            3 SYRALDLNLISAKHLKDVHLISKMDVYAVVSISGDHTIKKQKVKSHVDRSGGSNPTWNFPIKFTFNQSLAQQNRLTLDFK   82 (305)
Q Consensus         3 ~~~~L~V~vvsA~dL~~~~~~gk~dpYv~v~l~~~~~~~~~~~kT~v~k~~~~nP~Wne~f~f~v~~~~~~~~~~~L~v~   82 (305)
                      ..+.|+|+|++|++|..   .+..||||+|.+.++..  ..+++|+++++ +.||+|||+|.|.|....+  ....|.|+
T Consensus        24 ~~~~L~V~v~~a~~L~~---~g~~dpyVkv~l~~~~~--~~~~kT~v~~~-~~~P~wne~f~f~v~~~~l--~~~~L~~~   95 (138)
T d1wfma_          24 QKAELFVTRLEAVTSNH---DGGCDCYVQGSVANRTG--SVEAQTALKKR-QLHTTWEEGLVLPLAEEEL--PTATLTLT   95 (138)
T ss_dssp             TTTEEEEEEEEEECCCC---SSCCCEEEEEEEEETTE--EEEEECCCCCC-CSSEECSSCEEEECCTTSS--TTCEEEEE
T ss_pred             CCCEEEEEEEEcCCCCC---CCCcCcEEEEEECCCCC--ccceeeeEECC-CCCceEeeeEEEEeeehhc--cceEEEEE
Confidence            35789999999999953   36789999999976432  35688999877 8999999999999976543  33689999


Q ss_pred             EEecCCC-CCcceeEEEEeCcccccccCCCCCCCCCcceEEEEEeec
Q 021949           83 IKSDGLL-GDKTVGEVIVPIKELLDSSSSSSSGDAKSMKFVTYQVRS  128 (305)
Q Consensus        83 V~d~~~~-~d~~IG~~~vpL~~l~~~~~~~~~~~g~~~~~~~~~l~~  128 (305)
                      |||++.+ ++++||++.|+|.++....          ....|+.|+.
T Consensus        96 V~d~~~~~~~~~iG~~~i~L~~l~~~~----------~~~~W~~L~~  132 (138)
T d1wfma_          96 LRTCDRFSRHSVAGELRLGLDGTSVPL----------GAAQWGELKT  132 (138)
T ss_dssp             EEECCSSCTTSCSEEEEEESSSSSSCT----------TCCEEEECCC
T ss_pred             EeeecccccceeeeEEEEEhHHccCCC----------CceEeEeCCC
Confidence            9999888 7889999999999986422          2367899875

>d1uowa_ b.7.1.2 (A:) Synaptogamin I {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: Synaptogamin I
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.69  E-value=1.7e-16  Score=130.03  Aligned_cols=98  Identities=17%  Similarity=0.269  Sum_probs=82.0

Q ss_pred             ccceEEEEEEEecCCCCCCCCCCCCcEEEEEEecCCCCCCceEEeEecCCCCCCCeeeceEEEEeccchhccCceEEEEE
Q 021949            3 SYRALDLNLISAKHLKDVHLISKMDVYAVVSISGDHTIKKQKVKSHVDRSGGSNPTWNFPIKFTFNQSLAQQNRLTLDFK   82 (305)
Q Consensus         3 ~~~~L~V~vvsA~dL~~~~~~gk~dpYv~v~l~~~~~~~~~~~kT~v~k~~~~nP~Wne~f~f~v~~~~~~~~~~~L~v~   82 (305)
                      ..++|.|+|++|++|+..+..+.+||||++++.....+ ..+++|+++++ +.||+|||+|.|.|....+.  ...|.|+
T Consensus        23 ~~~~L~V~V~~a~~L~~~~~~~~~dpyV~v~l~~~~~~-~~~~kT~v~~~-t~nP~wne~f~F~v~~~~l~--~~~l~i~   98 (157)
T d1uowa_          23 TAGKLTVVILEAKNLKKMDVGGLSDPYVKIHLMQNGKR-LKKKKTTIKKN-TLNPYYNESFSFEVPFEQIQ--KVQVVVT   98 (157)
T ss_dssp             TTTEEEEEEEEEESCCCCSTTSCCCEEEEEEEEETTEE-EEEEECCCCCS-CSSCEEEEEEEEECCGGGGG--GCEEEEE
T ss_pred             CCCEEEEEEEEEEEcccccCCCCCCeeEEEEEecCCcc-ccceecccccC-CCCcccCCeEEEEecHHHcC--ccEEEEE
Confidence            45789999999999998888899999999998764322 34568998876 89999999999999766543  3589999


Q ss_pred             EEecCCC-CCcceeEEEEeCccc
Q 021949           83 IKSDGLL-GDKTVGEVIVPIKEL  104 (305)
Q Consensus        83 V~d~~~~-~d~~IG~~~vpL~~l  104 (305)
                      |||.+.+ ++++||++.|+|.++
T Consensus        99 v~d~~~~~~~~~iG~~~i~l~~~  121 (157)
T d1uowa_          99 VLDYDKIGKNDAIGKVFVGYNST  121 (157)
T ss_dssp             EEECCSSSCCCEEEEEEEETTCC
T ss_pred             EcccCCCCCCceeEEEEEecccC
Confidence            9999988 789999999999763

>d2cm5a1 b.7.1.2 (A:541-677) C2b-domain of rabphilin {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: C2b-domain of rabphilin
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.69  E-value=2e-16  Score=126.34  Aligned_cols=98  Identities=17%  Similarity=0.222  Sum_probs=82.1

Q ss_pred             ccceEEEEEEEecCCCCCCCCCCCCcEEEEEEecCCCCCCceEEeEecCCCCCCCeeeceEEEEeccchhccCceEEEEE
Q 021949            3 SYRALDLNLISAKHLKDVHLISKMDVYAVVSISGDHTIKKQKVKSHVDRSGGSNPTWNFPIKFTFNQSLAQQNRLTLDFK   82 (305)
Q Consensus         3 ~~~~L~V~vvsA~dL~~~~~~gk~dpYv~v~l~~~~~~~~~~~kT~v~k~~~~nP~Wne~f~f~v~~~~~~~~~~~L~v~   82 (305)
                      ..+.|+|+|++|++|...+..+..||||+|++..+... ..++||+++++ +.||.|||+|.|.|....+  ....|.|.
T Consensus        13 ~~~~L~V~v~~a~nL~~~~~~~~~dpyv~v~l~~~~~~-~~~~kT~v~~~-t~~P~wne~f~f~v~~~~l--~~~~l~v~   88 (137)
T d2cm5a1          13 QQGGLIVGIIRCVHLAAMDANGYSDPFVKLWLKPDMGK-KAKHKTQIKKK-TLNPEFNEEFFYDIKHSDL--AKKSLDIS   88 (137)
T ss_dssp             TTTEEEEEEEEEESCCCCSTTSCCCEEEEEEEETC----CCEEECCCCCS-CSSCEEEEEEEEECCGGGG--GGCEEEEE
T ss_pred             CCCEEEEEEEEEECCCCCCCCCCcCeEEEEEEEcCCcc-ceeecCEeEcC-CCCCccceEEEEEeEHHHc--cccEEEEE
Confidence            45789999999999998888889999999999754322 46789999887 7999999999999976544  23589999


Q ss_pred             EEecCCC-CCcceeEEEEeCccc
Q 021949           83 IKSDGLL-GDKTVGEVIVPIKEL  104 (305)
Q Consensus        83 V~d~~~~-~d~~IG~~~vpL~~l  104 (305)
                      ||+.+.+ ++++||++.|+|.++
T Consensus        89 v~~~~~~~~~~~iG~~~i~l~~~  111 (137)
T d2cm5a1          89 VWDYDIGKSNDYIGGCQLGISAK  111 (137)
T ss_dssp             EEECCSSSCCEEEEEEEEETTCC
T ss_pred             eeeCCCCCCCCEEEEEEeCcccc
Confidence            9999887 789999999999764

>d2zkmx2 b.7.1.1 (X:678-799) Phospholipase C-beta-2 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: PLC-like (P variant)
domain: Phospholipase C-beta-2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.67  E-value=1.3e-15  Score=119.82  Aligned_cols=116  Identities=20%  Similarity=0.352  Sum_probs=85.2

Q ss_pred             eEEEEEEEecCCCCCCCCCCCCcEEEEEEecCCCCCCceEEeEe-cCCCCCCCeeece-EEE-EeccchhccCceEEEEE
Q 021949            6 ALDLNLISAKHLKDVHLISKMDVYAVVSISGDHTIKKQKVKSHV-DRSGGSNPTWNFP-IKF-TFNQSLAQQNRLTLDFK   82 (305)
Q Consensus         6 ~L~V~vvsA~dL~~~~~~gk~dpYv~v~l~~~~~~~~~~~kT~v-~k~~~~nP~Wne~-f~f-~v~~~~~~~~~~~L~v~   82 (305)
                      +|.|+|++|++|.+.    +.||||+|++.+.+.....+.+|++ +++++.||.|||+ |.| .+...++    ..|.|.
T Consensus         2 tl~V~Visaq~L~~~----~~dPyV~V~l~g~~~D~~~~~~t~~~~~~n~~nP~wne~~~~~~~~~~~~l----~~L~f~   73 (122)
T d2zkmx2           2 TLSITVISGQFLSER----SVRTYVEVELFGLPGDPKRRYRTKLSPSTNSINPVWKEEPFVFEKILMPEL----ASLRVA   73 (122)
T ss_dssp             EEEEEEEEEESCCSS----CCCEEEEEEEECCTTSCCCCEECCCCSSSCCSSCBCCCCCEEEEEESSGGG----CEEEEE
T ss_pred             EEEEEEEEeeCCCCC----CCCcEEEEEEECcCCCCCccEEEEEEEeCCeecceEcccEeEEEecCCCcc----cEEEEE
Confidence            699999999999765    4899999999753322123444444 4566899999976 443 3444333    589999


Q ss_pred             EEecCCCCCcceeEEEEeCcccccccCCCCCCCCCcceEEEEEeecCCCC--CccEEEEEEEEec
Q 021949           83 IKSDGLLGDKTVGEVIVPIKELLDSSSSSSSGDAKSMKFVTYQVRSSSGK--PKGELHFSYKFSE  145 (305)
Q Consensus        83 V~d~~~~~d~~IG~~~vpL~~l~~~~~~~~~~~g~~~~~~~~~l~~~~g~--~~G~l~lsl~~~~  145 (305)
                      |||++   |++||++.|+|+.|.. +            .++++|++..++  ...+|.+.|++++
T Consensus        74 V~D~d---~~~lG~~~ipl~~l~~-G------------yR~vpL~~~~g~~l~~~~L~v~i~~~~  122 (122)
T d2zkmx2          74 VMEEG---NKFLGHRIIPINALNS-G------------YHHLCLHSESNMPLTMPALFIFLEMKD  122 (122)
T ss_dssp             EEETT---TEEEEEEEEEGGGBCC-E------------EEEEEEECTTCCEEEEEEEEEEEEEEC
T ss_pred             EECCC---CCEEEEEEEEcccCcC-C------------ceEEEccCCCcCCCCCceEEEEEEEEC
Confidence            99985   7899999999999873 2            566789988777  4677777777653

>d1w15a_ b.7.1.2 (A:) Synaptotagmin IV {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: Synaptotagmin IV
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.66  E-value=1.8e-16  Score=127.16  Aligned_cols=98  Identities=16%  Similarity=0.264  Sum_probs=76.5

Q ss_pred             ccceEEEEEEEecCCCCCCCCCCCCcEEEEEEecCCCCCCceEEeEecCCCCCCCeeeceEEEEeccchhccCceEEEEE
Q 021949            3 SYRALDLNLISAKHLKDVHLISKMDVYAVVSISGDHTIKKQKVKSHVDRSGGSNPTWNFPIKFTFNQSLAQQNRLTLDFK   82 (305)
Q Consensus         3 ~~~~L~V~vvsA~dL~~~~~~gk~dpYv~v~l~~~~~~~~~~~kT~v~k~~~~nP~Wne~f~f~v~~~~~~~~~~~L~v~   82 (305)
                      ..++|.|+|++|++|...+..+..||||++++..+... ..+++|+++++ +.||.|||+|.|.|....+  ....|.|+
T Consensus        13 ~~~~L~V~v~~a~~L~~~~~~~~~dpyvkv~l~~~~~~-~~~~kT~~~~~-t~~P~wne~f~F~v~~~~~--~~~~l~i~   88 (138)
T d1w15a_          13 TTNTLTVVVLKARHLPKSDVSGLSDPYVKVNLYHAKKR-ISKKKTHVKKC-TPNAVFNELFVFDIPCESL--EEISVEFL   88 (138)
T ss_dssp             TTTEEEEEEEEEESCC------CCCEEEEEEEEETTEE-EEEEECCCCCS-CSSEEEEEEEEEECCSSSS--TTEEEEEE
T ss_pred             CCCEEEEEEEEeECCCCCCCCCCcCEEEEEEEeCCccc-CccccceeECC-CCCCeECcEEEEEecHHHh--CccEEEEE
Confidence            35689999999999998888889999999998654321 35678998887 7999999999999876554  33689999


Q ss_pred             EEecCCC-CCcceeEEEEeCccc
Q 021949           83 IKSDGLL-GDKTVGEVIVPIKEL  104 (305)
Q Consensus        83 V~d~~~~-~d~~IG~~~vpL~~l  104 (305)
                      |||.+.+ ++++||++.|+|.+.
T Consensus        89 v~d~~~~~~~~~iG~~~i~l~~~  111 (138)
T d1w15a_          89 VLDSERGSRNEVIGRLVLGATAE  111 (138)
T ss_dssp             EEECCTTSCCEEEEEEEESTTCC
T ss_pred             EEeCCCCCCCCEEEEEEEcchhC
Confidence            9999887 789999999999764

>d1bdya_ b.7.1.1 (A:) Domain from protein kinase C delta {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: PLC-like (P variant)
domain: Domain from protein kinase C delta
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.66  E-value=2.9e-16  Score=123.68  Aligned_cols=122  Identities=11%  Similarity=0.183  Sum_probs=89.9

Q ss_pred             CCccceEEEEEEEecCCCCCCCCCCCCcEEEEEEecCCCCCCceEEeEecCCCCCCCeeeceEEEEeccchhccCceEEE
Q 021949            1 MASYRALDLNLISAKHLKDVHLISKMDVYAVVSISGDHTIKKQKVKSHVDRSGGSNPTWNFPIKFTFNQSLAQQNRLTLD   80 (305)
Q Consensus         1 m~~~~~L~V~vvsA~dL~~~~~~gk~dpYv~v~l~~~~~~~~~~~kT~v~k~~~~nP~Wne~f~f~v~~~~~~~~~~~L~   80 (305)
                      |+..-++.|.+..+..++..  .+.+||||+|.+.+.... .++.+|++.++ |+||+|||+|.|.|.+.      ..|.
T Consensus         1 ~~~~~~~~~~~~~~~~~~~~--~~~~dPY~~v~l~~~~~~-~~~~~t~~~kk-T~nP~WnE~F~~~v~~~------~~l~   70 (123)
T d1bdya_           1 MAPFLRISFNSYELGSLQAE--DDASQPFCAVKMKEALTT-DRGKTLVQKKP-TMYPEWKSTFDAHIYEG------RVIQ   70 (123)
T ss_dssp             CCEEEEEEEEEEECCTTCCC--CCSCCCEEEEEEEEECCG-GGTTBEEECSC-CBCCCTTCEEEEECCTT------CEEE
T ss_pred             CCCeEEEEEEEeecccCCCC--CCCCCCEEEEEEcCcccc-ccceEEEEeCC-CCCcccceEEEEEEccc------cEEE
Confidence            44455566666666666544  478999999999753221 23456777776 89999999999999653      4799


Q ss_pred             EEEEecCCCCCcceeEEEEeCcccccccCCCCCCCCCcceEEEEEeecCCCCCccEEEEEEEEec
Q 021949           81 FKIKSDGLLGDKTVGEVIVPIKELLDSSSSSSSGDAKSMKFVTYQVRSSSGKPKGELHFSYKFSE  145 (305)
Q Consensus        81 v~V~d~~~~~d~~IG~~~vpL~~l~~~~~~~~~~~g~~~~~~~~~l~~~~g~~~G~l~lsl~~~~  145 (305)
                      |.|||++   |+++|.+.|.|.+|....    ...+ .....|+.|.     ++|+|+|+++|..
T Consensus        71 i~V~d~d---d~~~g~~~i~l~~l~~~~----~~~~-~~~~~W~~L~-----~~Gkl~l~v~~f~  122 (123)
T d1bdya_          71 IVLMRAA---EDPMSEVTVGVSVLAERC----KKNN-GKAEFWLDLQ-----PQAKVLMCVQYFL  122 (123)
T ss_dssp             EEEEEET---TEEEEEEEEEHHHHHHHH----HTTT-TEEEEEEECB-----SSCEEEEEEEEEE
T ss_pred             EEEEEcc---ccccCccEEehhheeecc----ccCC-CcccEEEeCC-----CCEEEEEEEEEec
Confidence            9999975   789999999999997543    1111 2457888885     5799999999864

>d1dqva2 b.7.1.2 (A:425-569) Synaptotagmin III {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: Synaptotagmin III
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.60  E-value=2.5e-16  Score=127.23  Aligned_cols=98  Identities=19%  Similarity=0.261  Sum_probs=82.7

Q ss_pred             cceEEEEEEEecCCCCCCCCCCCCcEEEEEEecCCCCCCceEEeEecCCCCCCCeeeceEEEEeccchhccCceEEEEEE
Q 021949            4 YRALDLNLISAKHLKDVHLISKMDVYAVVSISGDHTIKKQKVKSHVDRSGGSNPTWNFPIKFTFNQSLAQQNRLTLDFKI   83 (305)
Q Consensus         4 ~~~L~V~vvsA~dL~~~~~~gk~dpYv~v~l~~~~~~~~~~~kT~v~k~~~~nP~Wne~f~f~v~~~~~~~~~~~L~v~V   83 (305)
                      .+.|+|+|++|++|...+..+..||||+|++..+... ..+++|+++++ +.||.|||+|.|.|......  ...|.|.|
T Consensus        19 ~~~L~V~V~~a~nL~~~~~~~~~dpyv~v~l~~~~~~-~~~~kT~~~~~-t~~P~wne~f~F~v~~~~~~--~~~l~v~v   94 (145)
T d1dqva2          19 AGLLTVTIIKASNLKAMDLTGFSDPYVKASLISEGRR-LKKRKTSIKKN-TLNPTYNEALVFDVAPESVE--NVGLSIAV   94 (145)
T ss_dssp             TTEEEEEEEEEESCCCCSSSSCCCEEEEECCCTTCCT-TSCEECCCCCS-CSSCEEEECCCCCCCSGGGG--SCCCCCEE
T ss_pred             CCEEEEEEEEEeCCCCcCCCCCcCceEEEEEccCCcc-ceeecCEEEeC-CCCceecceEEEEEehhhcC--CCEEEEEE
Confidence            4789999999999998888888999999999765433 35788999887 89999999999998765443  35799999


Q ss_pred             EecCCC-CCcceeEEEEeCcccc
Q 021949           84 KSDGLL-GDKTVGEVIVPIKELL  105 (305)
Q Consensus        84 ~d~~~~-~d~~IG~~~vpL~~l~  105 (305)
                      ||.+.+ +|++||++.|+|..+.
T Consensus        95 ~d~~~~~~~~~iG~~~i~l~~~~  117 (145)
T d1dqva2          95 VDYDCIGHNEVIGVCRVGPEAAD  117 (145)
T ss_dssp             EECCSSSCCEEEEECCCSSCTTC
T ss_pred             EecCCCCCCcEEEEEEECchHcC
Confidence            999888 7889999999998764

>d2yrba1 b.7.1.1 (A:596-737) Fantom {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: PLC-like (P variant)
domain: Fantom
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.88  E-value=0.029  Score=42.96  Aligned_cols=124  Identities=14%  Similarity=0.275  Sum_probs=78.8

Q ss_pred             ceEEEEEEEecCCCCC-CCCCCCC--cEEEEEEecCCCCCCceEEeEecCCCCCCCeeeceEEEEeccchhc---cCceE
Q 021949            5 RALDLNLISAKHLKDV-HLISKMD--VYAVVSISGDHTIKKQKVKSHVDRSGGSNPTWNFPIKFTFNQSLAQ---QNRLT   78 (305)
Q Consensus         5 ~~L~V~vvsA~dL~~~-~~~gk~d--pYv~v~l~~~~~~~~~~~kT~v~k~~~~nP~Wne~f~f~v~~~~~~---~~~~~   78 (305)
                      ..++|.|.++.--+.. ...+..+  .||.+.+-.     -..+.|.+++  +.+|.+|.+..|.|..+..-   .....
T Consensus        10 nlfEihi~~~~~s~e~l~~~~d~~p~tF~T~~Fyd-----~Etq~TPv~~--g~~p~ynfts~Y~V~~d~~fl~YL~~~~   82 (142)
T d2yrba1          10 NLFEIHINKVTFSSEVLQASGDKEPVTFCTYAFYD-----FELQTTPVVR--GLHPEYNFTSQYLVHVNDLFLQYIQKNT   82 (142)
T ss_dssp             EEEEEEEEEECCCHHHHHHHCSSCCEEEEEECSTT-----CCCEECCCEE--SSSCCCCEEEEEEECCSHHHHHHHHHCC
T ss_pred             cEEEEEEeeEEEcHHHHhhccCCCCcEEEEEEEEe-----eeeecCceec--CCCCcceeEEEEEEccCHHHHHHHhhCC
Confidence            4577888776311100 0112233  466665543     3577788876  48999999988887655431   12346


Q ss_pred             EEEEEEecCCCCCcceeEEEEeCcccccccCCCCCCCCCcceEEEEEeecCCCC--CccEEEEEEEEe
Q 021949           79 LDFKIKSDGLLGDKTVGEVIVPIKELLDSSSSSSSGDAKSMKFVTYQVRSSSGK--PKGELHFSYKFS  144 (305)
Q Consensus        79 L~v~V~d~~~~~d~~IG~~~vpL~~l~~~~~~~~~~~g~~~~~~~~~l~~~~g~--~~G~l~lsl~~~  144 (305)
                      |.|+|+......-+.|+.+.|.|.++++..     +.    ...+-.|+..+++  .-|+|+.-++++
T Consensus        83 ~~lelhqa~g~~~~tvA~g~i~l~~lLd~~-----~r----~~~s~~l~g~~~~~~~~G~leyw~rlr  141 (142)
T d2yrba1          83 ITLEVHQAYSTEYETIAACQLKFHEILEKS-----GR----IFCTASLIGTKGDIPNFGTVEYWFRLR  141 (142)
T ss_dssp             EEEEEEEECSSCEEEEEEEEECCSHHHHCC-----SC----EEEEEEECBSSSCCTTSEEEEEEEEEE
T ss_pred             EEEEEEeecCCCcceeEEEEEEhhHhhCcc-----cc----ccceeEEEccCCCcceEEEEEEEEEEE
Confidence            889998876445568999999999999633     21    2445566665554  578888877764