Citrus Sinensis ID: 021961

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-----
Protein Sequence
MGSHSSTRAVGAILHRISNGVSSKWSPNSFALSKHGLLSRNLFSSASSISSWIPLYEVKHCNFQVRTIRTFAPVCMGRRSSKIAGRKGAQDAKKAKLYSRMGKEVISAVKKGGPNPTSNTVLAAVLEKAKELDVPKDIVERNIKRASEKGQEAFIEKVYEVYGYGGVSIVVEVLTDKITRSVAAVREVVKDCGGKMADPGSVMFKFRRARVVNIKFTDADKDQLLDIALDAGAEDVIEPPVNEDDTDEDRAERYYKVVSTSDNYTDITTKLREAGIPFETDNGSELLPITTIEDIHQNALTTCFL
Secondary Structure (PSIPRED)
cccccHHHHHHHHHHHHHccccccccccHHHHHHHcccccccccccccccccccccccccccEEEEEEEEEcccccccccHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHccccHHHHHHHHHHHcccccccEEEEEEEEEccccEEEEEEcccccccccHHHHHHHHHcccccccccccEEEcccccEEEEEEcccccHHHHHHHHHHcccccccccccccccccccccccEEEEEEccccHHHHHHHHHHcccccccccccEEEccccEEcccccHHHHccc
Secondary Structure Prediction (SSPRO)
ccccccHHEEHHEEEEEcccccccccccHHHHHccccccHHcHccHHccccccccccccccEEEEEEEEEccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHccccccHHHHHHHHHccccccccEEEEEEEEEcccEEEEEEEEEccHHHHHHHHHHHHHHcccEEccccccHHHEEEEEEEEEEHHHccHHHHHHHHHHHcccEEEcccccccccccccccccEEEEEcHHHHHHHHHHHHHccccHcHccEEEEEcccEEEEcccccccEEcc
Coil and Loop (DISEMBL)
MGSHSSTRAVGAILHRIsngvsskwspnsfalskhgllsrnlfssassisswiplyevkhcnfqvrtirtfapvcmgrrsskiagrkgaQDAKKAKLYSRMGKEVISAVkkggpnptsNTVLAAVLEKAkeldvpkdIVERNIKRASEKGQEAFIEKVYEVYGYGGVSIVVEVLTDKITRSVAAVREVVKdcggkmadpgsvmfKFRRARVVnikftdadkDQLLDIALDagaedvieppvneddtdedrAERYYKVVSTSDNYTDITTKLReagipfetdngsellpittIEDIHQnalttcfl
Flexible Loop (DISEMBL)
mgshsstraVGAILHRIsngvsskwsPNSFALSKHGLLSRNLFSSASSISSWIPLYEVKHCNFQVRTIrtfapvcmgrrsskiagrkgaqdakkaklYSRMGKEVIsavkkggpnptsNTVLAAVLekakeldvpkdiVERNIkrasekgqeaFIEKVYEVYGYGGVSIVVEVLTDKITRSVAAVREVVkdcggkmadpgsvmfkfRRARVVNIKFTDADKDQLLDIALdagaedvieppvneddtdedrAERYYkvvstsdnytditTKLREAGIPFETDNGSELLPITTIEDIHQNALTTCFL
Low Complexity Region (SEG)
MGSHSSTRAVGAILHRISNGVSSKWSPNSFALSKHGllsrnlfssassissWIPLYEVKHCNFQVRTIRTFAPVCMGRRSSKIAGRKGAQDAKKAKLYSRMGKEVISAVKKGGPNPTSNTVLAAVLEKAKELDVPKDIVERNIKRASEKGQEAFIEKVYEVYGYGGVSIVVEVLTDKITRSVAAVREVVKDCGGKMADPGSVMFKFRRARVVNIKFTDADKDQLLDIALDAGAEDVIEPPVNEDDTDEDRAERYYKVVSTSDNYTDITTKLREAGIPFETDNGSELLPITTIEDIHQNALTTCFL
Disordered region (IsUnstruct)
**********GAILHRISNGVSSKWSPNSFALSKHGLLSRNLFSSASSISSWIPLYEVKHCNFQVRTIRTFAPVCMG*******************************************VLAAVLEK***L*V**DIV***********QEAFIEKVYEVYGYGGVSIVVEVLTDKITRSVAAVREVVKDCGGKMADPGSVMFKFRRARVVNIKFTDADKDQLLDIALDAG*********************YYKVVSTSDNYTDITTKLREAGIPFETDNGSELLPITTIEDIHQNALTTC**
Disordered Region (DISOPRED)
**********GAILHRISNGVSSKWS***FALSKHGLLSR*************PLYEVKHCNFQVRTIRTFAPVCMGRRSSKIAGRKGAQDAKKAKLYSRMGKEVISAVKKGGPNPTSNTVLAAVLEKAKELDVPKDIVERNIKRASEKGQEAFIEKVYEVYGYGGVSIVVEVLTDKITRSVAAVREVVKDCGGKMADPGSVMFKFRRARVVNIKFTDADKDQLLDIALDAGAEDVIEPPVNEDDTDEDRAERYYKVVSTSDNYTDITTKLREAGIPFETDNGSELLPITTIEDIHQNALTTCFL
Disordered Region (DISEMBL)
*********VGAILHRISNGVSSKWSPNSFALSKHGLLSRNLFSSASSISSWIPLYEVKHCNFQVRTIRTFAPVCMGRRS*****************YSRMGKEVISAVKKGGPNPTSNTVLAAVLEKAKELDVPKDIVERNIKRASEKGQEAFIEKVYEVYGYGGVSIVVEVLTDKITRSVAAVREVVKDCGGKMADPGSVMFKFRRARVVNIKFTDADKDQLLDIALDAGAEDVIEPPVNEDDTDEDRAERYYKVVSTSDNYTDITTKLREAGIPFETDNGSELLPITTIEDIHQNALTTCFL
Disordered Region (DISPRO)
****SSTRAVGAILHRISNGVSSKWSPNSFALSKHGLLSRNLFSSASSISSWIPLYEVKHCNFQVRTIRTFAPVCMGRRSSKIAGRKGAQDAKKAKLYSRMGKEVISAVKKGGPNPTSNTVLAAVLEKAKELDVPKDIVERNIKRASEKGQEAFIEKVYEVYGYGGVSIVVEVLTDKITRSVAAVREVVKDCGGKMADPGSVMFKFRRARVVNIKFTDADKDQLLDIALDAGAEDVIEPPVNED**DEDRAERYYKVVSTSDNYTDITTKLREAGIPFETDNGSELLPITTIEDIHQNALTT*FL
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MGSHSSTRAVGAILHRISNGVSSKWSPNSFALSKHGLLSRNLFSSASSISSWIPLYEVKHCNFQVRTIRTFAPVCMGRRSSKIAGRKGAQDAKKAKLYSRMGKEVISAVKKGGPNPTSNTVLAAVLEKAKELDVPKDIVERNIKRASEKGQEAFIEKVYEVYGYGGVSIVVEVLTDKITRSVAAVREVVKDCGGKMADPGSVMFKFRRARVVNIKFTDADKDQLLDIALDAGAEDVIEPPVNEDDTDEDRAERYYKVVSTSDNYTDITTKLREAGIPFETDNGSELLPITTIEDIHQNALTTCFL
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	305	2.2.26 [Sep-21-2011]
O82314	331	Probable transcriptional	yes	no	0.940	0.867	0.684	1e-106
Q9Z7Y0	238	Probable transcriptional	yes	no	0.495	0.634	0.423	8e-30
Q9PJT5	238	Probable transcriptional	yes	no	0.495	0.634	0.423	9e-30
O84463	238	Probable transcriptional	yes	no	0.495	0.634	0.423	2e-29
B0B830	238	Probable transcriptional	yes	no	0.495	0.634	0.423	2e-29
B0BC95	238	Probable transcriptional	yes	no	0.495	0.634	0.423	2e-29
Q3KLP1	238	Probable transcriptional	yes	no	0.495	0.634	0.423	2e-29
B2V2S0	246	Probable transcriptional	yes	no	0.606	0.752	0.375	4e-29
B2TML4	246	Probable transcriptional	yes	no	0.606	0.752	0.375	4e-29
Q253C8	238	Probable transcriptional	yes	no	0.495	0.634	0.417	6e-29

>sp|O82314|U082_ARATH Probable transcriptional regulatory protein At2g25830 OS=Arabidopsis thaliana GN=At2g25830 PE=2 SV=2

 Score =  384 bits (987), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 210/307 (68%), Positives = 239/307 (77%), Gaps = 20/307 (6%)

Query: 1   MGSHSSTRAVGAILHRISNGVSSKWSPNSFALSKHGLLSRNLFSSASSISSWIPLYEVKH 60
           M SH S R    IL R SNGVSS+   NS   + H LLS  + ++ SS+SS  P     H
Sbjct: 1   MASHCSMRV---ILLRFSNGVSSRSILNS---TNHRLLSLTMTNTLSSLSSISPHTTTSH 54

Query: 61  ------------C--NFQVRTIRTFAPVCMGRRSSKIAGRKGAQDAKKAKLYSRMGKEVI 106
                       C    Q+R I    P+CMGRRSSKIAGRKGAQD+KKAKLY R+GKEV+
Sbjct: 55  FTAASQQSDDQNCFRKLQLRKISISTPLCMGRRSSKIAGRKGAQDSKKAKLYCRIGKEVV 114

Query: 107 SAVKKGGPNPTSNTVLAAVLEKAKELDVPKDIVERNIKRASEKGQEAFIEKVYEVYGYGG 166
           SAVKKGGPNP SNT LA +L+KAKELDVPKDIVERNIKRASEKGQEAFIEK+YEVYGYGG
Sbjct: 115 SAVKKGGPNPVSNTTLATILDKAKELDVPKDIVERNIKRASEKGQEAFIEKIYEVYGYGG 174

Query: 167 VSIVVEVLTDKITRSVAAVREVVKDCGGKMADPGSVMFKFRRARVVNIKFTDADKDQLLD 226
           VS+VVEVLTDKI RSVAA+R VVKD GGKMAD GSVMFKF+R RVVNIK T+ADKDQLL 
Sbjct: 175 VSMVVEVLTDKINRSVAAIRSVVKDYGGKMADSGSVMFKFKRVRVVNIKVTEADKDQLLI 234

Query: 227 IALDAGAEDVIEPPVNEDDTDEDRAERYYKVVSTSDNYTDITTKLREAGIPFETDNGSEL 286
           IALDAGAEDVIEPP  EDDTDEDR ERYYK+V++++NY+ I +KLR+ G+ FE DNGSEL
Sbjct: 235 IALDAGAEDVIEPPTYEDDTDEDREERYYKIVTSNENYSTILSKLRDEGVNFEPDNGSEL 294

Query: 287 LPITTIE 293
           LP+TT+E
Sbjct: 295 LPLTTVE 301

Arabidopsis thaliana (taxid: 3702)

>sp|Q9Z7Y0|Y573_CHLPN Probable transcriptional regulatory protein CPn_0573/CP_0176/CPj0573/CpB0595 OS=Chlamydia pneumoniae GN=CPn_0573 PE=3 SV=1

 Score =  130 bits (328), Expect = 8e-30,   Method: Compositional matrix adjust.
 Identities = 64/151 (42%), Positives = 99/151 (65%)

Query: 86  RKGAQDAKKAKLYSRMGKEVISAVKKGGPNPTSNTVLAAVLEKAKELDVPKDIVERNIKR 145
           RK   D KK K++SR+ KE+ISAVK GG +P SN  L  V++KAKE ++P + +ERN+K+
Sbjct: 13  RKERADHKKGKIFSRIIKELISAVKLGGADPKSNARLRMVIQKAKENNIPNENIERNLKK 72

Query: 146 ASEKGQEAFIEKVYEVYGYGGVSIVVEVLTDKITRSVAAVREVVKDCGGKMADPGSVMFK 205
           A+   Q+ F E  YE+YG+GGV I+VE +TD   R+ + +R  +   GG + +PGSV++ 
Sbjct: 73  ATSAEQKNFEEVTYELYGHGGVGIIVEAMTDNKNRTASDMRIAINKRGGSLVEPGSVLYN 132

Query: 206 FRRARVVNIKFTDADKDQLLDIALDAGAEDV 236
           F R     +  +  D++ +   A++AGAED+
Sbjct: 133 FARKGACTVAKSSIDEEVIFSYAIEAGAEDL 163

Chlamydia pneumoniae (taxid: 83558)

>sp|Q9PJT5|Y742_CHLMU Probable transcriptional regulatory protein TC_0742 OS=Chlamydia muridarum (strain MoPn / Nigg) GN=TC_0742 PE=3 SV=1

 Score =  130 bits (328), Expect = 9e-30,   Method: Compositional matrix adjust.
 Identities = 64/151 (42%), Positives = 96/151 (63%)

Query: 86  RKGAQDAKKAKLYSRMGKEVISAVKKGGPNPTSNTVLAAVLEKAKELDVPKDIVERNIKR 145
           RK   D KK K++SR  KE+ISAVK GGP+P SN  L  +++KAK+ ++P + +ERN+K+
Sbjct: 13  RKERADHKKGKIFSRTIKELISAVKMGGPDPKSNARLRMIIQKAKDQNIPNENIERNLKK 72

Query: 146 ASEKGQEAFIEKVYEVYGYGGVSIVVEVLTDKITRSVAAVREVVKDCGGKMADPGSVMFK 205
           AS   Q+ + E  YE+YG+GGV I+VE +TD   R+ + +R  V   GG + +PGSV++ 
Sbjct: 73  ASSADQKNYEEVTYELYGFGGVGIIVEAMTDNKNRTASDMRVAVNKRGGALVEPGSVLYN 132

Query: 206 FRRARVVNIKFTDADKDQLLDIALDAGAEDV 236
           F R     +  +  D+  LL   +D G ED+
Sbjct: 133 FSRKGACYVPKSSIDEASLLTHVIDCGGEDL 163

Chlamydia muridarum (strain MoPn / Nigg) (taxid: 243161)

>sp|O84463|Y457_CHLTR Probable transcriptional regulatory protein CT_457 OS=Chlamydia trachomatis (strain D/UW-3/Cx) GN=CT_457 PE=3 SV=1

 Score =  130 bits (326), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 64/151 (42%), Positives = 95/151 (62%)

Query: 86  RKGAQDAKKAKLYSRMGKEVISAVKKGGPNPTSNTVLAAVLEKAKELDVPKDIVERNIKR 145
           RK   D KK K++SR  KE+ISAVK GGP+P SN  L  +++KAK+ ++P + +ERN+K+
Sbjct: 13  RKERADHKKGKIFSRTIKELISAVKMGGPDPKSNARLRMIIQKAKDQNIPNENIERNLKK 72

Query: 146 ASEKGQEAFIEKVYEVYGYGGVSIVVEVLTDKITRSVAAVREVVKDCGGKMADPGSVMFK 205
           AS   Q+ + E  YE+YG+GGV I+VE +TD   R+ + +R  V   GG + +PGSV++ 
Sbjct: 73  ASSADQKNYEEVTYELYGFGGVGIIVEAMTDNKNRTASDMRVAVNKRGGALVEPGSVLYN 132

Query: 206 FRRARVVNIKFTDADKDQLLDIALDAGAEDV 236
           F R     +     D+  LL   +D G ED+
Sbjct: 133 FSRKGACYVPKHSIDEASLLTHMIDCGGEDL 163

Chlamydia trachomatis (strain D/UW-3/Cx) (taxid: 272561)

>sp|B0B830|Y717_CHLT2 Probable transcriptional regulatory protein CTL0717 OS=Chlamydia trachomatis serovar L2 (strain 434/Bu / ATCC VR-902B) GN=CTL0717 PE=3 SV=1

 Score =  130 bits (326), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 64/151 (42%), Positives = 95/151 (62%)

Query: 86  RKGAQDAKKAKLYSRMGKEVISAVKKGGPNPTSNTVLAAVLEKAKELDVPKDIVERNIKR 145
           RK   D KK K++SR  KE+ISAVK GGP+P SN  L  +++KAK+ ++P + +ERN+K+
Sbjct: 13  RKERADHKKGKIFSRTIKELISAVKMGGPDPKSNARLRMIIQKAKDQNIPNENIERNLKK 72

Query: 146 ASEKGQEAFIEKVYEVYGYGGVSIVVEVLTDKITRSVAAVREVVKDCGGKMADPGSVMFK 205
           AS   Q+ + E  YE+YG+GGV I+VE +TD   R+ + +R  V   GG + +PGSV++ 
Sbjct: 73  ASSADQKNYEEVTYELYGFGGVGIIVEAMTDNKNRTASDMRVAVNKRGGALVEPGSVLYN 132

Query: 206 FRRARVVNIKFTDADKDQLLDIALDAGAEDV 236
           F R     +     D+  LL   +D G ED+
Sbjct: 133 FSRKGACYVPKHSIDEASLLTHVIDCGGEDL 163

Chlamydia trachomatis serovar L2 (strain 434/Bu / ATCC VR-902B) (taxid: 471472)

>sp|B0BC95|Y713_CHLTB Probable transcriptional regulatory protein CTLon_0713 OS=Chlamydia trachomatis serovar L2b (strain UCH-1/proctitis) GN=CTLon_0713 PE=3 SV=1

 Score =  130 bits (326), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 64/151 (42%), Positives = 95/151 (62%)

Query: 86  RKGAQDAKKAKLYSRMGKEVISAVKKGGPNPTSNTVLAAVLEKAKELDVPKDIVERNIKR 145
           RK   D KK K++SR  KE+ISAVK GGP+P SN  L  +++KAK+ ++P + +ERN+K+
Sbjct: 13  RKERADHKKGKIFSRTIKELISAVKMGGPDPKSNARLRMIIQKAKDQNIPNENIERNLKK 72

Query: 146 ASEKGQEAFIEKVYEVYGYGGVSIVVEVLTDKITRSVAAVREVVKDCGGKMADPGSVMFK 205
           AS   Q+ + E  YE+YG+GGV I+VE +TD   R+ + +R  V   GG + +PGSV++ 
Sbjct: 73  ASSADQKNYEEVTYELYGFGGVGIIVEAMTDNKNRTASDMRVAVNKRGGALVEPGSVLYN 132

Query: 206 FRRARVVNIKFTDADKDQLLDIALDAGAEDV 236
           F R     +     D+  LL   +D G ED+
Sbjct: 133 FSRKGACYVPKHSIDEASLLTHVIDCGGEDL 163

Chlamydia trachomatis serovar L2b (strain UCH-1/proctitis) (taxid: 471473)

>sp|Q3KLP1|Y499_CHLTA Probable transcriptional regulatory protein CTA_0499 OS=Chlamydia trachomatis serovar A (strain HAR-13 / ATCC VR-571B) GN=CTA_0499 PE=3 SV=1

 Score =  130 bits (326), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 64/151 (42%), Positives = 95/151 (62%)

Query: 86  RKGAQDAKKAKLYSRMGKEVISAVKKGGPNPTSNTVLAAVLEKAKELDVPKDIVERNIKR 145
           RK   D KK K++SR  KE+ISAVK GGP+P SN  L  +++KAK+ ++P + +ERN+K+
Sbjct: 13  RKERADHKKGKIFSRTIKELISAVKMGGPDPKSNARLRMIIQKAKDQNIPNENIERNLKK 72

Query: 146 ASEKGQEAFIEKVYEVYGYGGVSIVVEVLTDKITRSVAAVREVVKDCGGKMADPGSVMFK 205
           AS   Q+ + E  YE+YG+GGV I+VE +TD   R+ + +R  V   GG + +PGSV++ 
Sbjct: 73  ASSADQKNYEEVTYELYGFGGVGIIVEAMTDNKNRTASDMRVAVNKRGGALVEPGSVLYN 132

Query: 206 FRRARVVNIKFTDADKDQLLDIALDAGAEDV 236
           F R     +     D+  LL   +D G ED+
Sbjct: 133 FSRKGACYVPKHSIDEASLLTHVIDCGGEDL 163

Chlamydia trachomatis serovar A (strain HAR-13 / ATCC VR-571B) (taxid: 315277)

>sp|B2V2S0|Y943_CLOBA Probable transcriptional regulatory protein CLH_0943 OS=Clostridium botulinum (strain Alaska E43 / Type E3) GN=CLH_0943 PE=3 SV=1

 Score =  129 bits (323), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 74/197 (37%), Positives = 112/197 (56%), Gaps = 12/197 (6%)

Query: 83  IAGRKGAQDAKKAKLYSRMGKEVISAVKKGGPNPTSNTVLAAVLEKAKELDVPKDIVERN 142
           I  +KG  DAK+ K+++++GKE++ AVK GGP+P +N  L  ++ KAK  ++P D + R+
Sbjct: 10  IQAKKGKTDAKRGKIFTKIGKELMVAVKNGGPSPETNNRLRDIIAKAKAANMPNDTITRS 69

Query: 143 IKRAS-EKGQEAFIEKVYEVYGYGGVSIVVEVLTDKITRSVAAVREVVKDCGGKMADPGS 201
           IK+AS E G   +   +YE YG  GV+++VE LTD   RS   VR      GG M   G 
Sbjct: 70  IKKASGELGSVNYENIIYEGYGPSGVAVIVETLTDNKNRSAGNVRSAFTKGGGNMGTQGC 129

Query: 202 VMFKFRRARVVNIKFTDADKDQLLDIALDAGAEDVIEPPVNEDDTDEDRAERYYKVVSTS 261
           V F F+    + I+  D D+D+++ +ALDAGAED         + DED     + V +T 
Sbjct: 130 VGFMFQEKGEMVIEKADKDEDEMMMLALDAGAEDF--------NADEDEV---FVVTTTP 178

Query: 262 DNYTDITTKLREAGIPF 278
           +++  +   L   GI F
Sbjct: 179 EDFGTVREALEAEGIEF 195

Clostridium botulinum (strain Alaska E43 / Type E3) (taxid: 508767)

>sp|B2TML4|Y1008_CLOBB Probable transcriptional regulatory protein CLL_A1008 OS=Clostridium botulinum (strain Eklund 17B / Type B) GN=CLL_A1008 PE=3 SV=1

 Score =  129 bits (323), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 74/197 (37%), Positives = 112/197 (56%), Gaps = 12/197 (6%)

Query: 83  IAGRKGAQDAKKAKLYSRMGKEVISAVKKGGPNPTSNTVLAAVLEKAKELDVPKDIVERN 142
           I  +KG  DAK+ K+++++GKE++ AVK GGP+P +N  L  ++ KAK  ++P D + R+
Sbjct: 10  IQAKKGKTDAKRGKIFTKIGKELMVAVKNGGPSPETNNRLRDIIAKAKAANMPNDTITRS 69

Query: 143 IKRAS-EKGQEAFIEKVYEVYGYGGVSIVVEVLTDKITRSVAAVREVVKDCGGKMADPGS 201
           IK+AS E G   +   +YE YG  GV+++VE LTD   RS   VR      GG M   G 
Sbjct: 70  IKKASGELGSVNYENIIYEGYGPSGVAVIVETLTDNKNRSAGNVRSAFTKGGGNMGTQGC 129

Query: 202 VMFKFRRARVVNIKFTDADKDQLLDIALDAGAEDVIEPPVNEDDTDEDRAERYYKVVSTS 261
           V F F+    + I+  D D+D+++ +ALDAGAED         + DED     + V +T 
Sbjct: 130 VGFMFQEKGEMVIEKADKDEDEMMMLALDAGAEDF--------NADEDEV---FVVTTTP 178

Query: 262 DNYTDITTKLREAGIPF 278
           +++  +   L   GI F
Sbjct: 179 EDFGTVREALEAEGIEF 195

Clostridium botulinum (strain Eklund 17B / Type B) (taxid: 508765)

>sp|Q253C8|Y838_CHLFF Probable transcriptional regulatory protein CF0838 OS=Chlamydophila felis (strain Fe/C-56) GN=CF0838 PE=3 SV=1

 Score =  128 bits (321), Expect = 6e-29,   Method: Compositional matrix adjust.
 Identities = 63/151 (41%), Positives = 96/151 (63%)

Query: 86  RKGAQDAKKAKLYSRMGKEVISAVKKGGPNPTSNTVLAAVLEKAKELDVPKDIVERNIKR 145
           RK   D K+ K++SR  KE+ISAVK GGP+P +N  L  +++KAK+ ++P + +ERN+K+
Sbjct: 13  RKERADHKRGKIFSRTIKELISAVKMGGPDPKTNARLRVIIQKAKDQNIPSENIERNLKK 72

Query: 146 ASEKGQEAFIEKVYEVYGYGGVSIVVEVLTDKITRSVAAVREVVKDCGGKMADPGSVMFK 205
           AS   Q+ F +  YE+YGYGGV I+VE +TD   R+ + +R  V   GG + +PGSV++ 
Sbjct: 73  ASSADQKNFEDVTYELYGYGGVGIIVEAMTDNKNRTASDMRIAVNKRGGSLVEPGSVLYN 132

Query: 206 FRRARVVNIKFTDADKDQLLDIALDAGAEDV 236
           F R     +     D+  LL   ++ GAED+
Sbjct: 133 FSRKGACYVPKNSIDEAALLSHVIEVGAEDL 163

Chlamydophila felis (strain Fe/C-56) (taxid: 264202)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	305
225429934	319	PREDICTED: UPF0082 protein At2g25830 [Vi	0.947	0.905	0.764	1e-118
255550912	311	conserved hypothetical protein [Ricinus	0.885	0.868	0.736	1e-110
18400953	331	YebC-related protein [Arabidopsis thalia	0.940	0.867	0.684	1e-104
297825653	327	hypothetical protein ARALYDRAFT_320374 [	0.931	0.868	0.705	1e-103
224089014	292	predicted protein [Populus trichocarpa]	0.780	0.815	0.782	1e-103
15810383	330	unknown protein [Arabidopsis thaliana] g	0.937	0.866	0.680	1e-102
356515613	306	PREDICTED: UPF0082 protein At2g25830-lik	0.836	0.833	0.718	1e-100
356515611	295	PREDICTED: UPF0082 protein At2g25830-lik	0.826	0.854	0.737	1e-100
449507300	362	PREDICTED: probable transcriptional regu	0.931	0.784	0.647	3e-96
449461317	320	PREDICTED: probable transcriptional regu	0.931	0.887	0.647	4e-96

>gi|225429934|ref|XP_002283851.1| PREDICTED: UPF0082 protein At2g25830 [Vitis vinifera] gi|296081846|emb|CBI20851.3| unnamed protein product [Vitis vinifera]

 Score =  431 bits (1108), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 224/293 (76%), Positives = 257/293 (87%), Gaps = 4/293 (1%)

Query: 1   MGSHSSTRAVGAILHRISNGVSSKWSPNSFALSKHGLLSRNLFSSASSISSWIPLYEVKH 60
           MGS+SS RA GA+LHR SNGV  K S NS AL + G L +N  SS SS SSW+ LYEVK 
Sbjct: 1   MGSYSSIRAFGALLHRFSNGVPFKHS-NSVAL-RTGFLPKNP-SSFSSKSSWLSLYEVK- 56

Query: 61  CNFQVRTIRTFAPVCMGRRSSKIAGRKGAQDAKKAKLYSRMGKEVISAVKKGGPNPTSNT 120
            + +VRTI+TF+PVCMGRRSSKIAGRKGAQDAKKAKLYS++GKEV+SAVK+ GPNP SNT
Sbjct: 57  LSVRVRTIQTFSPVCMGRRSSKIAGRKGAQDAKKAKLYSKIGKEVVSAVKRDGPNPKSNT 116

Query: 121 VLAAVLEKAKELDVPKDIVERNIKRASEKGQEAFIEKVYEVYGYGGVSIVVEVLTDKITR 180
           +LAAVLEKAKELDVPK+IVERNIKRASEKGQEA+IEK YEVYG+GGVS+++EVLTDKI R
Sbjct: 117 ILAAVLEKAKELDVPKEIVERNIKRASEKGQEAYIEKFYEVYGFGGVSMIIEVLTDKINR 176

Query: 181 SVAAVREVVKDCGGKMADPGSVMFKFRRARVVNIKFTDADKDQLLDIALDAGAEDVIEPP 240
           SVAAVREV+KDCGGKMADPGSVMFKFRRARVVN+K ++ADKDQLL IALD GAEDVIEPP
Sbjct: 177 SVAAVREVMKDCGGKMADPGSVMFKFRRARVVNVKASEADKDQLLTIALDTGAEDVIEPP 236

Query: 241 VNEDDTDEDRAERYYKVVSTSDNYTDITTKLREAGIPFETDNGSELLPITTIE 293
           V EDD +EDR+E YYK+V++++NY+ I  KLRE GI FETDNG E+LPITTIE
Sbjct: 237 VYEDDAEEDRSESYYKIVTSAENYSAILEKLREEGINFETDNGFEMLPITTIE 289

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255550912|ref|XP_002516504.1| conserved hypothetical protein [Ricinus communis] gi|223544324|gb|EEF45845.1| conserved hypothetical protein [Ricinus communis]

 Score =  403 bits (1036), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 207/281 (73%), Positives = 233/281 (82%), Gaps = 11/281 (3%)

Query: 16  RISNGVSSKWSPNSFALSKHGLLSRNL---FSSASSISSWIPLYEVKHCNFQVRTIRTFA 72
           RIS  V  +    S   +K G LS NL   F  +++ +S        HC   +R I T+ 
Sbjct: 9   RISYVVLMQEDHISSKRTKKGSLSLNLHKAFLRSANFNS--------HCQVNLRQIWTYP 60

Query: 73  PVCMGRRSSKIAGRKGAQDAKKAKLYSRMGKEVISAVKKGGPNPTSNTVLAAVLEKAKEL 132
           PVCMGRRS KIAGRKGAQDAKKAKLYSR+GKEV+SAVKKGGP+P SNTVLAA+LEKAKEL
Sbjct: 61  PVCMGRRSCKIAGRKGAQDAKKAKLYSRIGKEVVSAVKKGGPSPISNTVLAALLEKAKEL 120

Query: 133 DVPKDIVERNIKRASEKGQEAFIEKVYEVYGYGGVSIVVEVLTDKITRSVAAVREVVKDC 192
           DVPKDI+ERNIKRAS+KGQEA+IEK+YEVYG+GGVSIVVEVLTDKI RSVAAVREVVKD 
Sbjct: 121 DVPKDILERNIKRASDKGQEAYIEKIYEVYGFGGVSIVVEVLTDKINRSVAAVREVVKDY 180

Query: 193 GGKMADPGSVMFKFRRARVVNIKFTDADKDQLLDIALDAGAEDVIEPPVNEDDTDEDRAE 252
           GGKMADPGSVMFKF+R RVVNIK T+ADKDQLL IALDAGAEDVIEPP+ EDD DED++E
Sbjct: 181 GGKMADPGSVMFKFKRVRVVNIKVTEADKDQLLAIALDAGAEDVIEPPIYEDDADEDKSE 240

Query: 253 RYYKVVSTSDNYTDITTKLREAGIPFETDNGSELLPITTIE 293
            YYKVVS+S+NY +I +KLRE GI FETDNGSELLPITTIE
Sbjct: 241 SYYKVVSSSENYMEILSKLREEGIDFETDNGSELLPITTIE 281

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|18400953|ref|NP_565610.1| YebC-related protein [Arabidopsis thaliana] gi|22096384|sp|O82314.2|U082_ARATH RecName: Full=Probable transcriptional regulatory protein At2g25830 gi|20197365|gb|AAC42247.2| expressed protein [Arabidopsis thaliana] gi|330252663|gb|AEC07757.1| YebC-related protein [Arabidopsis thaliana]

 Score =  384 bits (987), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 210/307 (68%), Positives = 239/307 (77%), Gaps = 20/307 (6%)

Query: 1   MGSHSSTRAVGAILHRISNGVSSKWSPNSFALSKHGLLSRNLFSSASSISSWIPLYEVKH 60
           M SH S R    IL R SNGVSS+   NS   + H LLS  + ++ SS+SS  P     H
Sbjct: 1   MASHCSMRV---ILLRFSNGVSSRSILNS---TNHRLLSLTMTNTLSSLSSISPHTTTSH 54

Query: 61  ------------C--NFQVRTIRTFAPVCMGRRSSKIAGRKGAQDAKKAKLYSRMGKEVI 106
                       C    Q+R I    P+CMGRRSSKIAGRKGAQD+KKAKLY R+GKEV+
Sbjct: 55  FTAASQQSDDQNCFRKLQLRKISISTPLCMGRRSSKIAGRKGAQDSKKAKLYCRIGKEVV 114

Query: 107 SAVKKGGPNPTSNTVLAAVLEKAKELDVPKDIVERNIKRASEKGQEAFIEKVYEVYGYGG 166
           SAVKKGGPNP SNT LA +L+KAKELDVPKDIVERNIKRASEKGQEAFIEK+YEVYGYGG
Sbjct: 115 SAVKKGGPNPVSNTTLATILDKAKELDVPKDIVERNIKRASEKGQEAFIEKIYEVYGYGG 174

Query: 167 VSIVVEVLTDKITRSVAAVREVVKDCGGKMADPGSVMFKFRRARVVNIKFTDADKDQLLD 226
           VS+VVEVLTDKI RSVAA+R VVKD GGKMAD GSVMFKF+R RVVNIK T+ADKDQLL 
Sbjct: 175 VSMVVEVLTDKINRSVAAIRSVVKDYGGKMADSGSVMFKFKRVRVVNIKVTEADKDQLLI 234

Query: 227 IALDAGAEDVIEPPVNEDDTDEDRAERYYKVVSTSDNYTDITTKLREAGIPFETDNGSEL 286
           IALDAGAEDVIEPP  EDDTDEDR ERYYK+V++++NY+ I +KLR+ G+ FE DNGSEL
Sbjct: 235 IALDAGAEDVIEPPTYEDDTDEDREERYYKIVTSNENYSTILSKLRDEGVNFEPDNGSEL 294

Query: 287 LPITTIE 293
           LP+TT+E
Sbjct: 295 LPLTTVE 301

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297825653|ref|XP_002880709.1| hypothetical protein ARALYDRAFT_320374 [Arabidopsis lyrata subsp. lyrata] gi|297326548|gb|EFH56968.1| hypothetical protein ARALYDRAFT_320374 [Arabidopsis lyrata subsp. lyrata]

 Score =  382 bits (980), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 216/306 (70%), Positives = 244/306 (79%), Gaps = 22/306 (7%)

Query: 1   MGSHSSTRAVGAILHRISNGVSSKWSPNSFALSKHGLLSRNLFSSASSISSWIPLYEVKH 60
           M SH S RA   ILHR SNGVSS+   NS   +KH LL+  + +S SS+SS  P +   H
Sbjct: 1   MASHCSMRA---ILHRFSNGVSSRSILNS---TKHRLLT--MTNSLSSLSSISP-HTTSH 51

Query: 61  -----------C--NFQVRTIRTFAPVCMGRRSSKIAGRKGAQDAKKAKLYSRMGKEVIS 107
                      C    QVR I    P+CMGRRSSKIAGRKGAQD+KKAKLY R+GKEV+S
Sbjct: 52  FTASQQSDDENCFRKLQVRKISISTPLCMGRRSSKIAGRKGAQDSKKAKLYCRIGKEVVS 111

Query: 108 AVKKGGPNPTSNTVLAAVLEKAKELDVPKDIVERNIKRASEKGQEAFIEKVYEVYGYGGV 167
           AVKKGGPNP SNT LA +L+KAKELDVPKDIVERNIKRASEKGQEAFIEK+YEVYGYGGV
Sbjct: 112 AVKKGGPNPVSNTTLATILDKAKELDVPKDIVERNIKRASEKGQEAFIEKIYEVYGYGGV 171

Query: 168 SIVVEVLTDKITRSVAAVREVVKDCGGKMADPGSVMFKFRRARVVNIKFTDADKDQLLDI 227
           S+VVEVLTDKI RSVAA+R VVKD GGKMAD GSVMFKFRR RVVNIK T+ADKDQLL+I
Sbjct: 172 SMVVEVLTDKINRSVAAIRSVVKDYGGKMADSGSVMFKFRRVRVVNIKVTEADKDQLLNI 231

Query: 228 ALDAGAEDVIEPPVNEDDTDEDRAERYYKVVSTSDNYTDITTKLREAGIPFETDNGSELL 287
           ALDAGAEDVIEPP  EDDTDEDR ERYYK+V++S+NY+ I +KLR+ G+ FE DNGSELL
Sbjct: 232 ALDAGAEDVIEPPTYEDDTDEDREERYYKIVTSSENYSTILSKLRDEGVNFEPDNGSELL 291

Query: 288 PITTIE 293
           P+TT+E
Sbjct: 292 PLTTVE 297

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224089014|ref|XP_002308602.1| predicted protein [Populus trichocarpa] gi|222854578|gb|EEE92125.1| predicted protein [Populus trichocarpa]

 Score =  380 bits (977), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 191/244 (78%), Positives = 210/244 (86%), Gaps = 6/244 (2%)

Query: 56  YEVKH---CNFQVRTIR---TFAPVCMGRRSSKIAGRKGAQDAKKAKLYSRMGKEVISAV 109
           YE KH     +QV+ +R   TF PVCMGRRS KIAGRKGAQDAKKAKLY R+GKEV+SAV
Sbjct: 19  YEEKHRDSSGYQVKNVRKIWTFPPVCMGRRSCKIAGRKGAQDAKKAKLYCRIGKEVVSAV 78

Query: 110 KKGGPNPTSNTVLAAVLEKAKELDVPKDIVERNIKRASEKGQEAFIEKVYEVYGYGGVSI 169
           KKGGPNP SNT LAA+++K KELDVPK+I+ERNIKRASEKGQEAFIEK+YEVYG GGVSI
Sbjct: 79  KKGGPNPESNTALAALIDKFKELDVPKEILERNIKRASEKGQEAFIEKIYEVYGLGGVSI 138

Query: 170 VVEVLTDKITRSVAAVREVVKDCGGKMADPGSVMFKFRRARVVNIKFTDADKDQLLDIAL 229
           VVEV TDKI RSVA +REVVKD GGKMADPGSV+FKFRRARVVNIK TDAD+DQLL IAL
Sbjct: 139 VVEVSTDKIKRSVAVIREVVKDYGGKMADPGSVLFKFRRARVVNIKVTDADRDQLLGIAL 198

Query: 230 DAGAEDVIEPPVNEDDTDEDRAERYYKVVSTSDNYTDITTKLREAGIPFETDNGSELLPI 289
           DAGAEDVIEPP  EDD+DEDR+E YYKVVS ++NY  I +KLR  GI FETDNGSELLPI
Sbjct: 199 DAGAEDVIEPPTYEDDSDEDRSESYYKVVSPAENYAAILSKLRNEGISFETDNGSELLPI 258

Query: 290 TTIE 293
           T IE
Sbjct: 259 TPIE 262

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|15810383|gb|AAL07079.1| unknown protein [Arabidopsis thaliana] gi|21281203|gb|AAM45134.1| unknown protein [Arabidopsis thaliana]

 Score =  377 bits (969), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 209/307 (68%), Positives = 238/307 (77%), Gaps = 21/307 (6%)

Query: 1   MGSHSSTRAVGAILHRISNGVSSKWSPNSFALSKHGLLSRNLFSSASSISSWIPLYEVKH 60
           M SH S R    IL R SNGVSS+   NS   + H LLS  + ++ SS+SS  P     H
Sbjct: 1   MASHCSMRV---ILLRFSNGVSSRSILNS---TNHRLLSLTMTNTLSSLSSISPHTTTSH 54

Query: 61  ------------C--NFQVRTIRTFAPVCMGRRSSKIAGRKGAQDAKKAKLYSRMGKEVI 106
                       C    Q+R I    P+CMGR SSKIAGRKGAQD+KKAKLY R+GKEV+
Sbjct: 55  FTAASQQSDDQNCFRKLQLRKISISTPLCMGR-SSKIAGRKGAQDSKKAKLYCRIGKEVV 113

Query: 107 SAVKKGGPNPTSNTVLAAVLEKAKELDVPKDIVERNIKRASEKGQEAFIEKVYEVYGYGG 166
           SAVKKGGPNP SNT LA +L+KAKELDVPKDIVERNIKRASEKGQEAFIEK+YEVYGYGG
Sbjct: 114 SAVKKGGPNPVSNTTLATILDKAKELDVPKDIVERNIKRASEKGQEAFIEKIYEVYGYGG 173

Query: 167 VSIVVEVLTDKITRSVAAVREVVKDCGGKMADPGSVMFKFRRARVVNIKFTDADKDQLLD 226
           VS+VVEVLTDKI RSVAA+R VVKD GGKMAD GSVMFKF+R RVVNIK T+ADKDQLL 
Sbjct: 174 VSMVVEVLTDKINRSVAAIRSVVKDYGGKMADSGSVMFKFKRVRVVNIKVTEADKDQLLI 233

Query: 227 IALDAGAEDVIEPPVNEDDTDEDRAERYYKVVSTSDNYTDITTKLREAGIPFETDNGSEL 286
           IALDAGAEDVIEPP  EDDTDEDR ERYYK+V++++NY+ I +KLR+ G+ FE DNGSEL
Sbjct: 234 IALDAGAEDVIEPPTYEDDTDEDREERYYKIVTSNENYSTILSKLRDEGVNFEPDNGSEL 293

Query: 287 LPITTIE 293
           LP+TT+E
Sbjct: 294 LPLTTVE 300

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356515613|ref|XP_003526493.1| PREDICTED: UPF0082 protein At2g25830-like isoform 2 [Glycine max]

 Score =  369 bits (948), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 189/263 (71%), Positives = 216/263 (82%), Gaps = 8/263 (3%)

Query: 39  SRNLFSSASSISSWIPLYEVKHCNFQVRTIRTFAPVCMGRRSSKIAGRKGAQDAKKAKLY 98
           SR   SS++ +      ++    N QVR I +  PVCMGRRSSKIAGRKGAQDAKKAKLY
Sbjct: 14  SRVSLSSSTFVRGKSLWFDANRDNSQVRRIWSSTPVCMGRRSSKIAGRKGAQDAKKAKLY 73

Query: 99  SRMGKEVISAVKKGGPNPTSNTVLAAVLEKAKELDVPKDIVERNIKRASEKGQEAFIEKV 158
           SR+GKEV+SAVK+GGPN TSN+VLAAVLEKAKELDVPKDIVERN+KRASEKGQEA+IEKV
Sbjct: 74  SRIGKEVVSAVKRGGPNVTSNSVLAAVLEKAKELDVPKDIVERNMKRASEKGQEAYIEKV 133

Query: 159 YEVYGYGGVSIVVEVLTDKITRSVAAVREVVKDCGGKMADPGSVMFKFRRARVVNIKFTD 218
           YEVYGYGGVS+VVEV TDKI RSVA +REV+KD GGKMAD GSV FKF+R RVVNIK T+
Sbjct: 134 YEVYGYGGVSMVVEVSTDKIHRSVAKIREVIKDYGGKMADSGSVTFKFKRVRVVNIKATN 193

Query: 219 ADKDQLLDIALDAGAEDVIEPPVNEDDTDEDRAE--------RYYKVVSTSDNYTDITTK 270
           ADKDQLL IALDAGAEDVI+PP  EDDT+EDR++        RYYK+V +S+NY+ I +K
Sbjct: 194 ADKDQLLAIALDAGAEDVIDPPTYEDDTEEDRSDKFILFHFVRYYKIVGSSENYSSILSK 253

Query: 271 LREAGIPFETDNGSELLPITTIE 293
           LRE GI FE DNGSELLP T +E
Sbjct: 254 LREEGIDFEPDNGSELLPNTPVE 276

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356515611|ref|XP_003526492.1| PREDICTED: UPF0082 protein At2g25830-like isoform 1 [Glycine max]

 Score =  369 bits (948), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 188/255 (73%), Positives = 213/255 (83%), Gaps = 3/255 (1%)

Query: 39  SRNLFSSASSISSWIPLYEVKHCNFQVRTIRTFAPVCMGRRSSKIAGRKGAQDAKKAKLY 98
           SR   SS++ +      ++    N QVR I +  PVCMGRRSSKIAGRKGAQDAKKAKLY
Sbjct: 14  SRVSLSSSTFVRGKSLWFDANRDNSQVRRIWSSTPVCMGRRSSKIAGRKGAQDAKKAKLY 73

Query: 99  SRMGKEVISAVKKGGPNPTSNTVLAAVLEKAKELDVPKDIVERNIKRASEKGQEAFIEKV 158
           SR+GKEV+SAVK+GGPN TSN+VLAAVLEKAKELDVPKDIVERN+KRASEKGQEA+IEKV
Sbjct: 74  SRIGKEVVSAVKRGGPNVTSNSVLAAVLEKAKELDVPKDIVERNMKRASEKGQEAYIEKV 133

Query: 159 YEVYGYGGVSIVVEVLTDKITRSVAAVREVVKDCGGKMADPGSVMFKFRRARVVNIKFTD 218
           YEVYGYGGVS+VVEV TDKI RSVA +REV+KD GGKMAD GSV FKF+R RVVNIK T+
Sbjct: 134 YEVYGYGGVSMVVEVSTDKIHRSVAKIREVIKDYGGKMADSGSVTFKFKRVRVVNIKATN 193

Query: 219 ADKDQLLDIALDAGAEDVIEPPVNEDDTDEDRAERYYKVVSTSDNYTDITTKLREAGIPF 278
           ADKDQLL IALDAGAEDVI+PP  EDDT+ED   RYYK+V +S+NY+ I +KLRE GI F
Sbjct: 194 ADKDQLLAIALDAGAEDVIDPPTYEDDTEED---RYYKIVGSSENYSSILSKLREEGIDF 250

Query: 279 ETDNGSELLPITTIE 293
           E DNGSELLP T +E
Sbjct: 251 EPDNGSELLPNTPVE 265

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449507300|ref|XP_004162992.1| PREDICTED: probable transcriptional regulatory protein At2g25830-like, partial [Cucumis sativus]

 Score =  357 bits (917), Expect = 3e-96,   Method: Compositional matrix adjust.
 Identities = 189/292 (64%), Positives = 226/292 (77%), Gaps = 8/292 (2%)

Query: 6   STRAVGAILHRIS-NGVSSKWSPNSFALSKHGLLSRNLFSSASSISS---WIPLYEVKHC 61
           S +A G IL R   N +  K SP  F    H     +  S A+  SS   W    E+K  
Sbjct: 3   SLQAFGVILKRFPLNSIIHK-SPRFF--HPHSSGLCSSSSLAAVTSSSPLWAFDSELKSR 59

Query: 62  NFQVRTIRTFAPVCMGRRSSKIAGRKGAQDAKKAKLYSRMGKEVISAVKKGGPNPTSNTV 121
             QVR I   +PVCMGRRS KIAGRKGAQDAKKAKLY+R+GKEV+SA K+GG NPTSN +
Sbjct: 60  GNQVRRI-WMSPVCMGRRSCKIAGRKGAQDAKKAKLYARIGKEVVSACKRGGTNPTSNPL 118

Query: 122 LAAVLEKAKELDVPKDIVERNIKRASEKGQEAFIEKVYEVYGYGGVSIVVEVLTDKITRS 181
           L  +LEK KELD+PK+I +RNIKRASEKGQEA+IEK YEVYGYGG S+VVEV TDK+ RS
Sbjct: 119 LTTLLEKIKELDIPKEIFDRNIKRASEKGQEAYIEKTYEVYGYGGASMVVEVSTDKVNRS 178

Query: 182 VAAVREVVKDCGGKMADPGSVMFKFRRARVVNIKFTDADKDQLLDIALDAGAEDVIEPPV 241
           VAAVREV+KD GGKMAD GSVMFKFRRARVVN+K ++ DKDQLL+I+LDAGAEDVIEPP 
Sbjct: 179 VAAVREVLKDYGGKMADSGSVMFKFRRARVVNVKASNVDKDQLLNISLDAGAEDVIEPPE 238

Query: 242 NEDDTDEDRAERYYKVVSTSDNYTDITTKLREAGIPFETDNGSELLPITTIE 293
            EDDT+ED++ERYYK+V++++NY+ I +KLRE  I FETD GSELLP+++IE
Sbjct: 239 YEDDTEEDKSERYYKIVTSTENYSGILSKLREENIKFETDGGSELLPMSSIE 290

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449461317|ref|XP_004148388.1| PREDICTED: probable transcriptional regulatory protein At2g25830-like [Cucumis sativus]

 Score =  357 bits (915), Expect = 4e-96,   Method: Compositional matrix adjust.
 Identities = 189/292 (64%), Positives = 226/292 (77%), Gaps = 8/292 (2%)

Query: 6   STRAVGAILHRIS-NGVSSKWSPNSFALSKHGLLSRNLFSSASSISS---WIPLYEVKHC 61
           S +A G IL R   N +  K SP  F    H     +  S A+  SS   W    E+K  
Sbjct: 3   SLQAFGVILKRFPLNSIIHK-SPRFF--HPHSSGLCSSSSLAAVTSSSPLWAFDSELKSR 59

Query: 62  NFQVRTIRTFAPVCMGRRSSKIAGRKGAQDAKKAKLYSRMGKEVISAVKKGGPNPTSNTV 121
             QVR I   +PVCMGRRS KIAGRKGAQDAKKAKLY+R+GKEV+SA K+GG NPTSN +
Sbjct: 60  GNQVRRI-WMSPVCMGRRSCKIAGRKGAQDAKKAKLYARIGKEVVSACKRGGTNPTSNPL 118

Query: 122 LAAVLEKAKELDVPKDIVERNIKRASEKGQEAFIEKVYEVYGYGGVSIVVEVLTDKITRS 181
           L  +LEK KELD+PK+I +RNIKRASEKGQEA+IEK YEVYGYGG S+VVEV TDK+ RS
Sbjct: 119 LTTLLEKIKELDIPKEIFDRNIKRASEKGQEAYIEKTYEVYGYGGASMVVEVSTDKVNRS 178

Query: 182 VAAVREVVKDCGGKMADPGSVMFKFRRARVVNIKFTDADKDQLLDIALDAGAEDVIEPPV 241
           VAAVREV+KD GGKMAD GSVMFKFRRARVVN+K ++ DKDQLL+I+LDAGAEDVIEPP 
Sbjct: 179 VAAVREVLKDYGGKMADSGSVMFKFRRARVVNVKASNVDKDQLLNISLDAGAEDVIEPPE 238

Query: 242 NEDDTDEDRAERYYKVVSTSDNYTDITTKLREAGIPFETDNGSELLPITTIE 293
            EDDT+ED++ERYYK+V++++NY+ I +KLRE  I FETD GSELLP+++IE
Sbjct: 239 YEDDTEEDKSERYYKIVTSTENYSGILSKLREENIKFETDGGSELLPMSSIE 290

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	305
TAIR|locus:2043480	331	AT2G25830 [Arabidopsis thalian	0.940	0.867	0.661	2.2e-96
UNIPROTKB|P62036	247	GSU1074 "Probable transcriptio	0.672	0.829	0.354	1.2e-28
TIGR_CMR|GSU_1074	247	GSU_1074 "conserved hypothetic	0.672	0.829	0.354	1.2e-28
UNIPROTKB|P0A8A0	246	yebC "conserved protein" [Esch	0.491	0.609	0.385	1.1e-27
UNIPROTKB|Q4K7D6	248	PFL_4766 "Probable transcripti	0.521	0.641	0.373	1.4e-27
UNIPROTKB|Q609L3	248	MCA1220 "Probable transcriptio	0.616	0.758	0.363	1.7e-27
UNIPROTKB|Q8EEF0	248	SO_2432 "Probable transcriptio	0.504	0.620	0.393	4.5e-27
TIGR_CMR|SO_2432	248	SO_2432 "conserved hypothetica	0.504	0.620	0.393	4.5e-27
UNIPROTKB|Q87Y32	248	PSPTO_3980 "Probable transcrip	0.524	0.645	0.351	1e-25
UNIPROTKB|Q48FC2	248	PSPPH_3775 "Probable transcrip	0.524	0.645	0.357	1.7e-25

TAIR|locus:2043480 AT2G25830 [Arabidopsis thaliana (taxid:3702)]

 Score = 958 (342.3 bits), Expect = 2.2e-96, P = 2.2e-96
 Identities = 203/307 (66%), Positives = 228/307 (74%)

Query:     1 MGSHSSTRAVGAILHRISNGVSSKWSPNSFALSKHGXXXXXXXXXXXXXXXWIPLYEVKH 60
             M SH S R    IL R SNGVSS+   NS   + H                  P     H
Sbjct:     1 MASHCSMRV---ILLRFSNGVSSRSILNS---TNHRLLSLTMTNTLSSLSSISPHTTTSH 54

Query:    61 ------------C--NFQVRTIRTFAPVCMGRRSSKIAGRKGAQDAKKAKLYSRMGKEVI 106
                         C    Q+R I    P+CMGRRSSKIAGRKGAQD+KKAKLY R+GKEV+
Sbjct:    55 FTAASQQSDDQNCFRKLQLRKISISTPLCMGRRSSKIAGRKGAQDSKKAKLYCRIGKEVV 114

Query:   107 SAVKKGGPNPTSNTVLAAVLEKAKELDVPKDIVERNIKRASEKGQEAFIEKVYEVYGYGG 166
             SAVKKGGPNP SNT LA +L+KAKELDVPKDIVERNIKRASEKGQEAFIEK+YEVYGYGG
Sbjct:   115 SAVKKGGPNPVSNTTLATILDKAKELDVPKDIVERNIKRASEKGQEAFIEKIYEVYGYGG 174

Query:   167 VSIVVEVLTDKITRSVAAVREVVKDCGGKMADPGSVMFKFRRARVVNIKFTDADKDQLLD 226
             VS+VVEVLTDKI RSVAA+R VVKD GGKMAD GSVMFKF+R RVVNIK T+ADKDQLL 
Sbjct:   175 VSMVVEVLTDKINRSVAAIRSVVKDYGGKMADSGSVMFKFKRVRVVNIKVTEADKDQLLI 234

Query:   227 IALDAGAEDVIEPPVNEDDTDEDRAERYYKVVSTSDNYTDITTKLREAGIPFETDNGSEL 286
             IALDAGAEDVIEPP  EDDTDEDR ERYYK+V++++NY+ I +KLR+ G+ FE DNGSEL
Sbjct:   235 IALDAGAEDVIEPPTYEDDTDEDREERYYKIVTSNENYSTILSKLRDEGVNFEPDNGSEL 294

Query:   287 LPITTIE 293
             LP+TT+E
Sbjct:   295 LPLTTVE 301

GO:0009507 "chloroplast" evidence=ISM;IDA

GO:0009073 "aromatic amino acid family biosynthetic process" evidence=RCA

GO:0016226 "iron-sulfur cluster assembly" evidence=RCA

GO:0042819 "vitamin B6 biosynthetic process" evidence=RCA

UNIPROTKB|P62036 GSU1074 "Probable transcriptional regulatory protein GSU1074" [Geobacter sulfurreducens PCA (taxid:243231)]

 Score = 319 (117.4 bits), Expect = 1.2e-28, P = 1.2e-28
 Identities = 78/220 (35%), Positives = 126/220 (57%)

Query:    81 SKIAGRKGAQDAKKAKLYSRMGKEVISAVKKGGPNPTSNTVLAAVLEKAKELDVPKDIVE 140
             S I  +KGA DAK+ K+++++ KE+  A K GG +P  N  L A ++KAK  ++PKD +E
Sbjct:     8 STIRHKKGAADAKRGKVFTKLIKEITVAAKIGGGDPNGNPRLRAAVDKAKAENMPKDNIE 67

Query:   141 RNIKRAS-EKGQEAFIEKVYEVYGYGGVSIVVEVLTDKITRSVAAVREVVKDCGGKMADP 199
             R IK+ + E    ++ E +YE YG GGV+++VE +TD   R+V  VR     C G M + 
Sbjct:    68 RAIKKGTGELEGVSYEEIIYEGYGPGGVAVLVECMTDNRNRTVGEVRSTFTKCNGNMGEA 127

Query:   200 GSVMFKFRRARVVNIKFTDADKDQLLDIALDAGAEDVIEPPVNEDDTDEDRAERYYKVVS 259
             G V + F +  ++ +   D D ++L + AL+AGA+DV          DE   E  Y+V++
Sbjct:   128 GCVSWMFDKKGLIVLS-KDVDFEKLFETALEAGADDV---------ADE---EEQYEVLT 174

Query:   260 TSDNYTDITTKLREAGIPFETDNGSELLPITTIEDIHQNA 299
                 + D+   L +AG PFE+   + ++P T ++   +NA
Sbjct:   175 DPAAFIDVREALEKAGFPFESAEIT-MIPQTMVKLDGKNA 213

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

TIGR_CMR|GSU_1074 GSU_1074 "conserved hypothetical protein TIGR01033" [Geobacter sulfurreducens PCA (taxid:243231)]

 Score = 319 (117.4 bits), Expect = 1.2e-28, P = 1.2e-28
 Identities = 78/220 (35%), Positives = 126/220 (57%)

Query:    81 SKIAGRKGAQDAKKAKLYSRMGKEVISAVKKGGPNPTSNTVLAAVLEKAKELDVPKDIVE 140
             S I  +KGA DAK+ K+++++ KE+  A K GG +P  N  L A ++KAK  ++PKD +E
Sbjct:     8 STIRHKKGAADAKRGKVFTKLIKEITVAAKIGGGDPNGNPRLRAAVDKAKAENMPKDNIE 67

Query:   141 RNIKRAS-EKGQEAFIEKVYEVYGYGGVSIVVEVLTDKITRSVAAVREVVKDCGGKMADP 199
             R IK+ + E    ++ E +YE YG GGV+++VE +TD   R+V  VR     C G M + 
Sbjct:    68 RAIKKGTGELEGVSYEEIIYEGYGPGGVAVLVECMTDNRNRTVGEVRSTFTKCNGNMGEA 127

Query:   200 GSVMFKFRRARVVNIKFTDADKDQLLDIALDAGAEDVIEPPVNEDDTDEDRAERYYKVVS 259
             G V + F +  ++ +   D D ++L + AL+AGA+DV          DE   E  Y+V++
Sbjct:   128 GCVSWMFDKKGLIVLS-KDVDFEKLFETALEAGADDV---------ADE---EEQYEVLT 174

Query:   260 TSDNYTDITTKLREAGIPFETDNGSELLPITTIEDIHQNA 299
                 + D+   L +AG PFE+   + ++P T ++   +NA
Sbjct:   175 DPAAFIDVREALEKAGFPFESAEIT-MIPQTMVKLDGKNA 213

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

UNIPROTKB|P0A8A0 yebC "conserved protein" [Escherichia coli K-12 (taxid:83333)]

 Score = 285 (105.4 bits), Expect = 1.1e-27, Sum P(2) = 1.1e-27
 Identities = 59/153 (38%), Positives = 96/153 (62%)

Query:    86 RKGAQDAKKAKLYSRMGKEVISAVKKGGPNPTSNTVLAAVLEKAKELDVPKDIVERNIKR 145
             RK AQDAK+ K+++++ +E+++A K GG +P +N  L A ++KA   ++ +D + R I R
Sbjct:    13 RKAAQDAKRGKIFTKIIRELVTAAKLGGGDPDANPRLRAAVDKALSNNMTRDTLNRAIAR 72

Query:   146 ASEKGQEAFIEKV-YEVYGYGGVSIVVEVLTDKITRSVAAVREVVKDCGGKMADPGSVMF 204
                   +A +E + YE YG GG +I++E L+D   R+VA VR     CGG +   GSV +
Sbjct:    73 GVGGDDDANMETIIYEGYGPGGTAIMIECLSDNRNRTVAEVRHAFSKCGGNLGTDGSVAY 132

Query:   205 KFRRARVVNIKFTDADKDQLLDIALDAGAEDVI 237
              F +  V++  F   D+D +++ AL+AGAEDV+
Sbjct:   133 LFSKKGVIS--FEKGDEDTIMEAALEAGAEDVV 163

GO:0003677 "DNA binding" evidence=IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0006351 "transcription, DNA-dependent" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

UNIPROTKB|Q4K7D6 PFL_4766 "Probable transcriptional regulatory protein PFL_4766" [Pseudomonas protegens Pf-5 (taxid:220664)]

 Score = 277 (102.6 bits), Expect = 1.4e-27, Sum P(2) = 1.4e-27
 Identities = 62/166 (37%), Positives = 97/166 (58%)

Query:    81 SKIAGRKGAQDAKKAKLYSRMGKEVISAVKKGGPNPTSNTVLAAVLEKAKELDVPKDIVE 140
             + I  RK  QDAK+ K++++  +E+  A ++GG +P SN  L   L+KA   ++ +DI++
Sbjct:     8 ANIKHRKERQDAKRGKIFTKWIRELTVAARQGGGDPNSNPRLRLALDKALGANMSRDIID 67

Query:   141 RNIKRAS-EKGQEAFIEKVYEVYGYGGVSIVVEVLTDKITRSVAAVREVVKDCGGKMADP 199
             R I R +   G +  +E  YE YG  GV+++VE +TD   R+ AAVR     CGG +   
Sbjct:    68 RAIARGTGAAGSDDVVELTYEGYGPNGVAVMVECMTDNRNRTAAAVRHAFSKCGGNLGTD 127

Query:   200 GSVMFKFRRARVVNIKFTDA-DKDQLLDIALDAGAEDVIEPPVNED 244
             GSV + F R     I F +  D+D L++ A++A A+DV+    NED
Sbjct:   128 GSVAYLFERKG--QITFAEGVDEDALMEAAMEADADDVVS---NED 168

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

UNIPROTKB|Q609L3 MCA1220 "Probable transcriptional regulatory protein MCA1220" [Methylococcus capsulatus str. Bath (taxid:243233)]

 Score = 308 (113.5 bits), Expect = 1.7e-27, P = 1.7e-27
 Identities = 73/201 (36%), Positives = 116/201 (57%)

Query:    81 SKIAGRKGAQDAKKAKLYSRMGKEVISAVKKGGPNPTSNTVLAAVLEKAKELDVPKDIVE 140
             + I  RKGAQDAK+ KL++++ +E+  A + GGP+P +N  L   ++KA   ++ KD +E
Sbjct:     8 ANIQHRKGAQDAKRGKLFTKLIREITVASRTGGPDPGNNPRLRTAIDKALVANMSKDTIE 67

Query:   141 RNIKRASEKGQEAFIEKV-YEVYGYGGVSIVVEVLTDKITRSVAAVREVVKDCGGKMADP 199
             R IK+ S        E+V YE YG GG++++V+ LTD   R+VA VR      GG +   
Sbjct:    68 RAIKKGSGAADGDNYEEVRYEGYGPGGIAVLVDCLTDNRNRTVAEVRHAFSKAGGNLGTD 127

Query:   200 GSVMFKFRRARVVNIKFTDADKDQLLDIALDAGAEDVIEPPVNEDDTDEDRAERYYKVVS 259
             GSV + F +  VV+    D  +D++++ ALDAGA+DV+   VNED + +        V++
Sbjct:   128 GSVAYLFSKTGVVSFS-ADLGEDRVMEPALDAGADDVV---VNEDGSVD--------VLT 175

Query:   260 TSDNYTDITTKLREAGIPFET 280
               D +  +   L  AG+  E+
Sbjct:   176 APDQFEAVRDALEAAGLTPES 196

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

UNIPROTKB|Q8EEF0 SO_2432 "Probable transcriptional regulatory protein SO_2432" [Shewanella oneidensis MR-1 (taxid:211586)]

 Score = 276 (102.2 bits), Expect = 4.5e-27, Sum P(2) = 4.5e-27
 Identities = 63/160 (39%), Positives = 99/160 (61%)

Query:    81 SKIAGRKGAQDAKKAKLYSRMGKEVISAVKKGGPNPTSNTVLAAVLEKAKELDVPKDIVE 140
             + I  RK AQDAK+ KL+++  +E+  + ++GG +P SN  L   ++KA   ++ +D +E
Sbjct:     8 ANIKHRKAAQDAKRGKLFTKFIRELTVSAREGGSDPDSNPRLRIAIDKALGGNMTRDTIE 67

Query:   141 RNIKR-ASE-KGQEAFIEKV-YEVYGYGGVSIVVEVLTDKITRSVAAVREVVKDCGGKMA 197
             R IKR A E +GQ+  +E + YE YG GG +++VE +TD   R+V+ VR      GG + 
Sbjct:    68 RAIKRGAGELEGQQ--LETIIYEGYGPGGTAVMVETMTDNRNRTVSGVRNAFSKSGGNLG 125

Query:   198 DPGSVMFKFRRARVVNIKFTDADKDQLLDIALDAGAEDVI 237
               GSV + F +  V++      D+D L+D AL+AGAEDV+
Sbjct:   126 TDGSVAYLFTKRGVLSYA-PGTDEDALMDAALEAGAEDVV 164

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

TIGR_CMR|SO_2432 SO_2432 "conserved hypothetical protein TIGR01033" [Shewanella oneidensis MR-1 (taxid:211586)]

 Score = 276 (102.2 bits), Expect = 4.5e-27, Sum P(2) = 4.5e-27
 Identities = 63/160 (39%), Positives = 99/160 (61%)

Query:    81 SKIAGRKGAQDAKKAKLYSRMGKEVISAVKKGGPNPTSNTVLAAVLEKAKELDVPKDIVE 140
             + I  RK AQDAK+ KL+++  +E+  + ++GG +P SN  L   ++KA   ++ +D +E
Sbjct:     8 ANIKHRKAAQDAKRGKLFTKFIRELTVSAREGGSDPDSNPRLRIAIDKALGGNMTRDTIE 67

Query:   141 RNIKR-ASE-KGQEAFIEKV-YEVYGYGGVSIVVEVLTDKITRSVAAVREVVKDCGGKMA 197
             R IKR A E +GQ+  +E + YE YG GG +++VE +TD   R+V+ VR      GG + 
Sbjct:    68 RAIKRGAGELEGQQ--LETIIYEGYGPGGTAVMVETMTDNRNRTVSGVRNAFSKSGGNLG 125

Query:   198 DPGSVMFKFRRARVVNIKFTDADKDQLLDIALDAGAEDVI 237
               GSV + F +  V++      D+D L+D AL+AGAEDV+
Sbjct:   126 TDGSVAYLFTKRGVLSYA-PGTDEDALMDAALEAGAEDVV 164

GO:0008150 "biological_process" evidence=ND

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

UNIPROTKB|Q87Y32 PSPTO_3980 "Probable transcriptional regulatory protein PSPTO_3980" [Pseudomonas syringae pv. tomato str. DC3000 (taxid:223283)]

 Score = 262 (97.3 bits), Expect = 1.0e-25, Sum P(2) = 1.0e-25
 Identities = 58/165 (35%), Positives = 95/165 (57%)

Query:    81 SKIAGRKGAQDAKKAKLYSRMGKEVISAVKKGGPNPTSNTVLAAVLEKAKELDVPKDIVE 140
             + I  RK  QDAKK K++++  +E+  A ++GG +P SN  L   L+KA   ++ +D ++
Sbjct:     8 ANIKHRKERQDAKKGKIFTKWIRELTVAARQGGGDPGSNPRLRLALDKALGANMTRDTID 67

Query:   141 RNIKRASEKGQEAFIEKV-YEVYGYGGVSIVVEVLTDKITRSVAAVREVVKDCGGKMADP 199
             R + R         +E++ YE YG GGV+++VE +TD   R+ AAVR     CGG +   
Sbjct:    68 RAVARGVGASDGDDVEELGYEGYGPGGVAVMVETMTDNRNRTAAAVRHAFTKCGGNLGTD 127

Query:   200 GSVMFKFRRARVVNIKFTDADKDQLLDIALDAGAEDVIEPPVNED 244
             GSV + F R   ++      D+D L++ A++A A+DV+    N+D
Sbjct:   128 GSVAYLFDRKGQISFA-AGVDEDSLIEAAMEADADDVV---TNDD 168

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

UNIPROTKB|Q48FC2 PSPPH_3775 "Probable transcriptional regulatory protein PSPPH_3775" [Pseudomonas syringae pv. phaseolicola 1448A (taxid:264730)]

 Score = 262 (97.3 bits), Expect = 1.7e-25, Sum P(2) = 1.7e-25
 Identities = 59/165 (35%), Positives = 95/165 (57%)

Query:    81 SKIAGRKGAQDAKKAKLYSRMGKEVISAVKKGGPNPTSNTVLAAVLEKAKELDVPKDIVE 140
             + I  RK  QDAKK K++++  +E+  A ++GG +P SN  L   L+KA   ++ +D ++
Sbjct:     8 ANIKHRKERQDAKKGKIFTKWIRELTVAARQGGGDPGSNPRLRLALDKALGANMTRDTID 67

Query:   141 RNIKRASEKGQEAFIEKV-YEVYGYGGVSIVVEVLTDKITRSVAAVREVVKDCGGKMADP 199
             R + R         +E++ YE YG GGV+I+VE +TD   R+ AAVR     CGG +   
Sbjct:    68 RAVARGVGASDGDDVEELGYEGYGPGGVAIMVETMTDNRNRTAAAVRHAFTKCGGNLGTD 127

Query:   200 GSVMFKFRRARVVNIKFTDADKDQLLDIALDAGAEDVIEPPVNED 244
             GSV + F R   ++      D+D L++ A++A A+DV+    N+D
Sbjct:   128 GSVAYLFDRKGQISFA-AGVDEDALIEAAMEADADDVV---TNDD 168

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
O82314	U082_ARATH	No assigned EC number	0.6840	0.9409	0.8670	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	305
pfam01709	234	pfam01709, Transcrip_reg, Transcriptional regulato	5e-70
PRK00110	245	PRK00110, PRK00110, hypothetical protein; Validate	7e-57
COG0217	241	COG0217, COG0217, Uncharacterized conserved protei	3e-55
PRK12378	235	PRK12378, PRK12378, hypothetical protein; Provisio	3e-52
TIGR01033	238	TIGR01033, TIGR01033, DNA-binding regulatory prote	8e-49

>gnl|CDD|216656 pfam01709, Transcrip_reg, Transcriptional regulator

 Score =  216 bits (553), Expect = 5e-70
 Identities = 83/217 (38%), Positives = 122/217 (56%), Gaps = 14/217 (6%)

Query: 78  RRSSKIAGRKGAQDAKKAKLYSRMGKEVISAVKKGGPNPTSNTVLAAVLEKAKELDVPKD 137
            + + I  RK AQDAK+ K+++++GKE+  A K GGP+P  N  L   +EKAK  ++PKD
Sbjct: 1   SKWANIKHRKAAQDAKRGKIFTKLGKEITVAAKMGGPDPEGNPRLRLAIEKAKAANMPKD 60

Query: 138 IVERNIKRAS-EKGQEAFIEKVYEVYGYGGVSIVVEVLTDKITRSVAAVREVVKDCGGKM 196
            +ER IK+ S     E + E  YE YG GGV+I+VE LTD   R+ A VR      GG +
Sbjct: 61  NIERAIKKGSGGLDGENYEEIRYEGYGPGGVAIIVECLTDNRNRTAADVRHAFSKNGGNL 120

Query: 197 ADPGSVMFKFRRARVVNIKFTDADKDQLLDIALDAGAEDVIEPPVNEDDTDEDRAERYYK 256
            + GSV + F R  V+  +    D+D+LL+ AL+AGAEDV E    ED +         +
Sbjct: 121 GETGSVSYMFDRKGVIVFEKEGVDEDELLEAALEAGAEDVEE----EDGS--------IE 168

Query: 257 VVSTSDNYTDITTKLREAGIPFETDNGSELLPITTIE 293
           V++   ++  +   L EAG+  E      ++P  T+E
Sbjct: 169 VITDPTDFEAVKKALEEAGLEIE-SAEITMIPQNTVE 204

This is a family of transcriptional regulators. In mammals, it activates the transcription of mitochondrially-encoded COX1. In bacteria, it negatively regulates the quorum-sensing response regulator by binding to its promoter region. Length = 234

>gnl|CDD|234640 PRK00110, PRK00110, hypothetical protein; Validated

 Score =  183 bits (467), Expect = 7e-57
 Identities = 80/219 (36%), Positives = 124/219 (56%), Gaps = 23/219 (10%)

Query: 81  SK---IAGRKGAQDAKKAKLYSRMGKEVISAVKKGGPNPTSNTVLAAVLEKAKELDVPKD 137
           SK   I  RKGAQDAK+ K+++++ +E+  A K GG +P  N  L   ++KAK  ++PKD
Sbjct: 5   SKWANIKHRKGAQDAKRGKIFTKLIREITVAAKLGGGDPEGNPRLRLAIDKAKAANMPKD 64

Query: 138 IVERNIKRAS-EKGQEAFIEKVYEVYGYGGVSIVVEVLTDKITRSVAAVREVVKDCGGKM 196
            +ER IK+ + E     + E  YE YG GGV+I+VE LTD   R+ A VR      GG +
Sbjct: 65  NIERAIKKGTGELDGANYEEIRYEGYGPGGVAIIVEALTDNRNRTAAEVRHAFSKNGGNL 124

Query: 197 ADPGSVMFKFRRARVVNIKFTDADKDQLLDIALDAGAEDVIEPPVNEDDTDEDRAERYYK 256
            + GSV + F R  V  I     D+D+L++ AL+AGAEDV         TD++     ++
Sbjct: 125 GETGSVSYMFDRKGV--IVIEPLDEDELMEAALEAGAEDVE--------TDDE----SFE 170

Query: 257 VVSTSDNYTDITTKLREAGIPFETDNGSEL--LPITTIE 293
           V++  +++  +   L  AG+  E+   +E+  +P  T+E
Sbjct: 171 VITAPEDFEAVRDALEAAGLEAES---AEVTMIPQNTVE 206

Length = 245

>gnl|CDD|223295 COG0217, COG0217, Uncharacterized conserved protein [Function unknown]

 Score =  179 bits (456), Expect = 3e-55
 Identities = 83/214 (38%), Positives = 125/214 (58%), Gaps = 14/214 (6%)

Query: 81  SKIAGRKGAQDAKKAKLYSRMGKEVISAVKKGGPNPTSNTVLAAVLEKAKELDVPKDIVE 140
           + I  RK AQDAK++K+++++ KE+  A K+GGP+P SN  L   +EKAK  ++PKD +E
Sbjct: 8   ANIKHRKAAQDAKRSKIFTKLIKEITVAAKQGGPDPESNPRLRTAIEKAKAANMPKDNIE 67

Query: 141 RNIKRAS-EKGQEAFIEKVYEVYGYGGVSIVVEVLTDKITRSVAAVREVVKDCGGKMADP 199
           R IK+AS  K    + E  YE YG GGV+I+VE LTD   R+ + VR      GG + +P
Sbjct: 68  RAIKKASGGKDGANYEEIRYEGYGPGGVAIIVEALTDNRNRTASNVRSAFNKNGGNLGEP 127

Query: 200 GSVMFKFRRARVVNIKFTDADKDQLLDIALDAGAEDVIEPPVNEDDTDEDRAERYYKVVS 259
           GSV + F R  V+ ++  + D+D+LL+ A++AGAEDV E        DE   E    V +
Sbjct: 128 GSVSYMFDRKGVIVVEKNEIDEDELLEAAIEAGAEDVEE--------DEGSIE----VYT 175

Query: 260 TSDNYTDITTKLREAGIPFETDNGSELLPITTIE 293
             +++  +   L  AG   E+     ++P  T+E
Sbjct: 176 EPEDFNKVKEALEAAGYEIESA-ELTMIPQNTVE 208

Length = 241

>gnl|CDD|237084 PRK12378, PRK12378, hypothetical protein; Provisional

 Score =  171 bits (435), Expect = 3e-52
 Identities = 78/218 (35%), Positives = 113/218 (51%), Gaps = 13/218 (5%)

Query: 76  MGRRSSKIAGRKGAQDAKKAKLYSRMGKEVISAVKKGGPNPTSNTVLAAVLEKAKELDVP 135
           MGR    I  +K  +D  K+K+++++GKE+  A K+GGP+P SN  L  V+E+AK+ +VP
Sbjct: 1   MGRAWENIKAKKAKKDGAKSKIFAKLGKEIYVAAKQGGPDPESNPALRFVIERAKKANVP 60

Query: 136 KDIVERNIKRASEKGQEAFIEKVYEVYGYGGVSIVVEVLTDKITRSVAAVREVVKDCGGK 195
           KD++ER IK+A   G E + E  YE +G  GV ++VE LTD + R+VA VR      GG 
Sbjct: 61  KDVIERAIKKAKGGGGEDYEEVRYEGFGPNGVMVIVECLTDNVNRTVANVRSAFNKNGGN 120

Query: 196 MADPGSVMFKFRRARVVNIKFTDADKDQLLDIALDAGAEDVIEPPVNEDDTDEDRAERYY 255
           +   GSV F F    V   +  D D+     I  D   EDV E    E+ T         
Sbjct: 121 LGTSGSVAFMFDHKGVFVFEGDDEDELLEALIDADVDVEDVEE----EEGT--------I 168

Query: 256 KVVSTSDNYTDITTKLREAGIPFETDNGSELLPITTIE 293
            V +   ++  +   L  AGI F      E++P   +E
Sbjct: 169 TVYTDPTDFHKVKKALEAAGIEFLVAE-LEMIPQNPVE 205

Length = 235

>gnl|CDD|233240 TIGR01033, TIGR01033, DNA-binding regulatory protein, YebC/PmpR family

 Score =  162 bits (412), Expect = 8e-49
 Identities = 79/221 (35%), Positives = 119/221 (53%), Gaps = 16/221 (7%)

Query: 76  MGRRSSK--IAGRKGAQDAKKAKLYSRMGKEVISAVKKGGPNPTSNTVLAAVLEKAKELD 133
           M   S    I  RK AQDAK+ K+++++ KE+I A K GG +P SN  L   +EKAK  +
Sbjct: 1   MAGHSKWANIKHRKAAQDAKRGKIFTKLIKEIIVAAKLGGGDPESNPRLRTAIEKAKAAN 60

Query: 134 VPKDIVERNIKRA-SEKGQEAFIEKVYEVYGYGGVSIVVEVLTDKITRSVAAVREVVKDC 192
           +PKD +ER IK+   E     + E  YE Y  GGV+I+VE LTD   R+ + VR      
Sbjct: 61  MPKDNIERAIKKGAGELDGSNYEEITYEGYAPGGVAIIVECLTDNKNRTASEVRSAFNKN 120

Query: 193 GGKMADPGSVMFKFRRARVVNIKFTDADKDQLLDIALDAGAEDVIEPPVNEDDTDEDRAE 252
           GG + +PGSV + F R  V+ +   + D++ L++ A++AGAED+        D D+D  E
Sbjct: 121 GGSLGEPGSVSYLFSRKGVIEVPKNEVDEEDLMEAAIEAGAEDI--------DVDDDEFE 172

Query: 253 RYYKVVSTSDNYTDITTKLREAGIPFETDNGSELLPITTIE 293
               V +  +    +   L   G P E      ++P+TT++
Sbjct: 173 ----VYTAPEELEKVKEALEAKGFPIE-SAEITMIPLTTVD 208

This model describes a minimally characterized protein family, restricted to bacteria excepting for some eukaryotic sequences that have possible transit peptides. YebC from E. coli is crystallized, and PA0964 from Pseudomonas aeruginosa has been shown to be a sequence-specific DNA-binding regulatory protein [Regulatory functions, DNA interactions]. Length = 238

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	305
COG0217	241	Uncharacterized conserved protein [Function unknow	100.0
PRK12378	235	hypothetical protein; Provisional	100.0
PRK00110	245	hypothetical protein; Validated	100.0
TIGR01033	238	DNA-binding regulatory protein, YebC/PmpR family.	100.0
PF01709	234	Transcrip_reg: Transcriptional regulator; InterPro	100.0
KOG2972	276	consensus Uncharacterized conserved protein [Funct	100.0
PRK07562	1220	ribonucleotide-diphosphate reductase subunit alpha	98.69

>COG0217 Uncharacterized conserved protein [Function unknown]

Probab=100.00  E-value=6.7e-76  Score=538.18  Aligned_cols=205  Identities=40%  Similarity=0.659  Sum_probs=196.1

Q ss_pred             CCc-hhHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHhhccC-Cccc
Q 021961           76 MGR-RSSKIAGRKGAQDAKKAKLYSRMGKEVISAVKKGGPNPTSNTVLAAVLEKAKELDVPKDIVERNIKRASEK-GQEA  153 (305)
Q Consensus        76 mG~-KwsnIkh~K~a~DakKsklfsKl~keI~vAvk~GG~DP~~N~~La~aI~~AK~~nmPKd~IErAIkra~g~-~~~~  153 (305)
                      +|| ||+||||+|+++|++|+|+|+||+|+|++|+|.|||||+.||+||.+|++||++|||||+|||||+||+|. ++.+
T Consensus         2 aGHsKw~nIkhrK~a~Dakr~Kif~Kl~keI~vAaK~Gg~dP~~NprLr~aI~kAk~~nmPkd~IerAI~ka~G~~d~~~   81 (241)
T COG0217           2 AGHSKWANIKHRKAAQDAKRSKIFTKLIKEITVAAKQGGPDPESNPRLRTAIEKAKAANMPKDNIERAIKKASGGKDGAN   81 (241)
T ss_pred             CccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCccCHHHHHHHHHHHHcCCCHHHHHHHHHhccCCCCccc
Confidence            465 99999999999999999999999999999999999999999999999999999999999999999999984 5579


Q ss_pred             eeEEEEEEEecCCcEEEEEEecCChhhHHHHHHHHHhhcCcccCCCccceecceeeEEEEeeCCCCCHHHHHHHHHHCCC
Q 021961          154 FIEKVYEVYGYGGVSIVVEVLTDKITRSVAAVREVVKDCGGKMADPGSVMFKFRRARVVNIKFTDADKDQLLDIALDAGA  233 (305)
Q Consensus       154 ~~e~~YE~~GPgGvaiIVE~lTDN~nRt~s~ir~i~~K~gG~l~~~gsv~f~F~~kGvi~v~~~~~d~D~l~e~AIEaGA  233 (305)
                      |+|++|||||||||+|||||||||+|||+++||++|+|+||+||++|||.|||+|||+|.+.+...|+|++||.|||+||
T Consensus        82 ~~ei~YEGygP~GvaiiVe~LTDN~NRTas~vR~~F~K~GG~lg~~GSV~~mF~~kGvi~~~~~~~~ed~l~e~~ieaga  161 (241)
T COG0217          82 YEEIRYEGYGPGGVAIIVEALTDNRNRTASNVRSAFNKNGGNLGEPGSVSYMFDRKGVIVVEKNEIDEDELLEAAIEAGA  161 (241)
T ss_pred             eEEEEEEeECCCceEEEEEeccCCcchhHHHHHHHHHhcCCccCCCceEEEEEeccEEEEECCCCCCHHHHHHHHHHCCc
Confidence            99999999999999999999999999999999999999999999999999999999999999877899999999999999


Q ss_pred             ccccCCCCCCCCCcccccCceEEEEeCcccHHHHHHHHHHCCCCeeecccceeecCCCcc
Q 021961          234 EDVIEPPVNEDDTDEDRAERYYKVVSTSDNYTDITTKLREAGIPFETDNGSELLPITTIE  293 (305)
Q Consensus       234 EDVee~~~~Ed~~~ed~~~~~~~i~~~p~d~~~V~~~L~~~G~~i~~s~ele~iP~~~Ve  293 (305)
                      |||+..            ++.|+|+|+|++|..|+++|+++|+++..+ ++.|+|+++|+
T Consensus       162 eDv~~~------------~~~~~V~t~p~~~~~V~~~L~~~g~~~~~a-el~~iP~~~v~  208 (241)
T COG0217         162 EDVEED------------EGSIEVYTEPEDFNKVKEALEAAGYEIESA-ELTMIPQNTVE  208 (241)
T ss_pred             hhhhcC------------CCeEEEEEChHHHHHHHHHHHHcCCceeee-eEEEecCCcee
Confidence            999851            247999999999999999999999999886 99999999998

>PRK12378 hypothetical protein; Provisional

Probab=100.00  E-value=2.1e-74  Score=530.81  Aligned_cols=206  Identities=38%  Similarity=0.642  Sum_probs=194.2

Q ss_pred             CCchhHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHhhccCCcccee
Q 021961           76 MGRRSSKIAGRKGAQDAKKAKLYSRMGKEVISAVKKGGPNPTSNTVLAAVLEKAKELDVPKDIVERNIKRASEKGQEAFI  155 (305)
Q Consensus        76 mG~KwsnIkh~K~a~DakKsklfsKl~keI~vAvk~GG~DP~~N~~La~aI~~AK~~nmPKd~IErAIkra~g~~~~~~~  155 (305)
                      |||||+||||+|+++|++|+|+|+||+|+|++|||+|||||+.|++||.+|++||+.|||||+||||||||+|.++.+|+
T Consensus         1 ~g~kW~~Ikh~K~~~Da~ksk~f~kl~reI~vA~k~GG~dP~~N~~Lr~aI~~Ak~~nmPkd~IerAIkk~~g~~~~~~~   80 (235)
T PRK12378          1 MGRAWENIKAKKAKKDGAKSKIFAKLGKEIYVAAKQGGPDPESNPALRFVIERAKKANVPKDVIERAIKKAKGGGGEDYE   80 (235)
T ss_pred             CCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCccCHHHHHHHHHHHHhCCCHHHHHHHHHhccCCCCCceE
Confidence            89999999999999999999999999999999999999999999999999999999999999999999999987666899


Q ss_pred             EEEEEEEecCCcEEEEEEecCChhhHHHHHHHHHhhcCcccCCCccceecceeeEEEEeeCCCCCHHHHHHHHHHCCC--
Q 021961          156 EKVYEVYGYGGVSIVVEVLTDKITRSVAAVREVVKDCGGKMADPGSVMFKFRRARVVNIKFTDADKDQLLDIALDAGA--  233 (305)
Q Consensus       156 e~~YE~~GPgGvaiIVE~lTDN~nRt~s~ir~i~~K~gG~l~~~gsv~f~F~~kGvi~v~~~~~d~D~l~e~AIEaGA--  233 (305)
                      +++|||||||||+|||||||||+|||+++||++|+|+||+|+++|||.|+|+|+|+|.+...  ++|++||+|||+||  
T Consensus        81 e~~YEgygPgGvaiiVe~lTDN~nRt~~~vr~~f~K~gg~l~~~gsv~~~Fe~kG~i~i~~~--~~d~~~e~aieaGa~~  158 (235)
T PRK12378         81 EVRYEGFGPNGVMVIVECLTDNVNRTVANVRSAFNKNGGNLGTSGSVAFMFDHKGVFVFEGD--DEDELLEALIDADVDV  158 (235)
T ss_pred             EEEEEEEcCCCcEEEEEECCCCHHHHHHHHHHHHhhcCCeECCCCceeeeeecceEEEeCCC--CHHHHHHHHHhCCCCc
Confidence            99999999999999999999999999999999999999999999999999999999999854  79999999999999  


Q ss_pred             ccccCCCCCCCCCcccccCceEEEEeCcccHHHHHHHHHHCCCCeeecccceeecCCCcc-chh
Q 021961          234 EDVIEPPVNEDDTDEDRAERYYKVVSTSDNYTDITTKLREAGIPFETDNGSELLPITTIE-DIH  296 (305)
Q Consensus       234 EDVee~~~~Ed~~~ed~~~~~~~i~~~p~d~~~V~~~L~~~G~~i~~s~ele~iP~~~Ve-~~~  296 (305)
                      |||++     |       ++.|+|+|+|++|.+|+++|++.||++.++ +++|+|+++|+ +++
T Consensus       159 edv~~-----~-------~~~~~i~t~p~~~~~v~~~L~~~g~~~~~s-ei~~~P~~~v~l~~e  209 (235)
T PRK12378        159 EDVEE-----E-------EGTITVYTDPTDFHKVKKALEAAGIEFLVA-ELEMIPQNPVELSGE  209 (235)
T ss_pred             ccccc-----c-------CCeEEEEECHHHHHHHHHHHHHcCCCceee-EEEEecCCCccCCHH
Confidence            66632     1       136999999999999999999999999986 99999999999 544

>PRK00110 hypothetical protein; Validated

Probab=100.00  E-value=1.2e-73  Score=528.51  Aligned_cols=208  Identities=37%  Similarity=0.636  Sum_probs=195.8

Q ss_pred             cCCc-hhHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHhhccC-Ccc
Q 021961           75 CMGR-RSSKIAGRKGAQDAKKAKLYSRMGKEVISAVKKGGPNPTSNTVLAAVLEKAKELDVPKDIVERNIKRASEK-GQE  152 (305)
Q Consensus        75 ~mG~-KwsnIkh~K~a~DakKsklfsKl~keI~vAvk~GG~DP~~N~~La~aI~~AK~~nmPKd~IErAIkra~g~-~~~  152 (305)
                      +||| ||+||||+|+++|++|+|+|+||+|+|++|||+|||||+.|++||++|++||+.|||||+||||||||+|. ++.
T Consensus         1 maGHskW~~Ikh~K~~~D~kksk~f~kl~reI~vAak~GG~DP~~N~~Lr~aI~~Ak~~nmPkd~IerAIkk~~g~~~~~   80 (245)
T PRK00110          1 MAGHSKWANIKHRKGAQDAKRGKIFTKLIREITVAAKLGGGDPEGNPRLRLAIDKAKAANMPKDNIERAIKKGTGELDGA   80 (245)
T ss_pred             CCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCccCHHHHHHHHHHHHhCCCHHHHHHHHHHhcCCCCcc
Confidence            4787 99999999999999999999999999999999999999999999999999999999999999999999986 667


Q ss_pred             ceeEEEEEEEecCCcEEEEEEecCChhhHHHHHHHHHhhcCcccCCCccceecceeeEEEEeeCCCCCHHHHHHHHHHCC
Q 021961          153 AFIEKVYEVYGYGGVSIVVEVLTDKITRSVAAVREVVKDCGGKMADPGSVMFKFRRARVVNIKFTDADKDQLLDIALDAG  232 (305)
Q Consensus       153 ~~~e~~YE~~GPgGvaiIVE~lTDN~nRt~s~ir~i~~K~gG~l~~~gsv~f~F~~kGvi~v~~~~~d~D~l~e~AIEaG  232 (305)
                      +|++++|||||||||+|||||||||+|||+++||++|+|+||+|+++|||.|+|+|+|+|.+...  ++|++||+|||+|
T Consensus        81 ~~~e~~YEg~gP~GvaiiVe~lTDN~nRt~~~vR~~f~K~gG~l~~~Gsv~~~Fe~kG~i~~~~~--~~d~~~e~aieaG  158 (245)
T PRK00110         81 NYEEIRYEGYGPGGVAIIVEALTDNRNRTAAEVRHAFSKNGGNLGETGSVSYMFDRKGVIVIEPL--DEDELMEAALEAG  158 (245)
T ss_pred             ceEEEEEEEEcCCCeEEEEEEecCCHHHHHHHHHHHHHhcCceeCCCcceEEEeccceEEEeCCC--CHHHHHHHHHhCC
Confidence            89999999999999999999999999999999999999999999999999999999999999743  7999999999999


Q ss_pred             CccccCCCCCCCCCcccccCceEEEEeCcccHHHHHHHHHHCCCCeeecccceeecCCCcc-chhh
Q 021961          233 AEDVIEPPVNEDDTDEDRAERYYKVVSTSDNYTDITTKLREAGIPFETDNGSELLPITTIE-DIHQ  297 (305)
Q Consensus       233 AEDVee~~~~Ed~~~ed~~~~~~~i~~~p~d~~~V~~~L~~~G~~i~~s~ele~iP~~~Ve-~~~~  297 (305)
                      ||||++    ||        +.|+|+|+|++|.+|+++|++.||++.++ +++|+|+++|+ ++++
T Consensus       159 aeDv~~----e~--------~~~~i~~~p~~~~~v~~~L~~~g~~~~~s-ei~~~P~~~v~l~~e~  211 (245)
T PRK00110        159 AEDVET----DD--------ESFEVITAPEDFEAVRDALEAAGLEAESA-EVTMIPQNTVELDEET  211 (245)
T ss_pred             CCEeec----cC--------CeEEEEECHHHHHHHHHHHHHcCCCeeee-EEEEecCCCcccCHHH
Confidence            999953    11        35999999999999999999999999886 99999999999 5543

>TIGR01033 DNA-binding regulatory protein, YebC/PmpR family

Probab=100.00  E-value=5.9e-73  Score=522.04  Aligned_cols=210  Identities=36%  Similarity=0.633  Sum_probs=197.0

Q ss_pred             cCCc-hhHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHhhccC-Ccc
Q 021961           75 CMGR-RSSKIAGRKGAQDAKKAKLYSRMGKEVISAVKKGGPNPTSNTVLAAVLEKAKELDVPKDIVERNIKRASEK-GQE  152 (305)
Q Consensus        75 ~mG~-KwsnIkh~K~a~DakKsklfsKl~keI~vAvk~GG~DP~~N~~La~aI~~AK~~nmPKd~IErAIkra~g~-~~~  152 (305)
                      +||| ||+||||+|+++|++|+|+|+||+|+|++|||+|||||+.|++||++|++||++||||++||||||||+|. ++.
T Consensus         1 maGHskw~~Ikh~K~~~D~~ksk~f~kl~r~I~vA~k~GG~DP~~N~~L~~ai~~Ak~~~~Pkd~IerAIkr~~g~~~~~   80 (238)
T TIGR01033         1 MAGHSKWANIKHRKAAQDAKRGKIFTKLIKEIIVAAKLGGGDPESNPRLRTAIEKAKAANMPKDNIERAIKKGAGELDGS   80 (238)
T ss_pred             CCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCccCHHHHHHHHHHHHhCCCHHHHHHHHHHhcCCCCcc
Confidence            4787 99999999999999999999999999999999999999999999999999999999999999999999986 667


Q ss_pred             ceeEEEEEEEecCCcEEEEEEecCChhhHHHHHHHHHhhcCcccCCCccceecceeeEEEEeeCCCCCHHHHHHHHHHCC
Q 021961          153 AFIEKVYEVYGYGGVSIVVEVLTDKITRSVAAVREVVKDCGGKMADPGSVMFKFRRARVVNIKFTDADKDQLLDIALDAG  232 (305)
Q Consensus       153 ~~~e~~YE~~GPgGvaiIVE~lTDN~nRt~s~ir~i~~K~gG~l~~~gsv~f~F~~kGvi~v~~~~~d~D~l~e~AIEaG  232 (305)
                      +|++++|||||||||+|||||||||+|||+++||++|+|+||+|+++|+|.|+|+|+|+|.+..+..++|++||.|||+|
T Consensus        81 ~~~~~~YEg~gP~GvaiiVe~lTDN~nRt~~~ir~~f~K~gg~l~~~gsv~~~Fe~kG~i~~~~~~~~~d~~~e~aieaG  160 (238)
T TIGR01033        81 NYEEITYEGYAPGGVAIIVECLTDNKNRTASEVRSAFNKNGGSLGEPGSVSYLFSRKGVIEVPKNEVDEEDLMEAAIEAG  160 (238)
T ss_pred             ceEEEEEEEEcCCceEEEEEEecCCHHhHHHHHHHHHHHcCCeeCCCCceeeeeecceEEEECCCCCCHHHHHHHHHhCC
Confidence            89999999999999999999999999999999999999999999999999999999999999865567999999999999


Q ss_pred             CccccCCCCCCCCCcccccCceEEEEeCcccHHHHHHHHHHCCCCeeecccceeecCCCcc-chhh
Q 021961          233 AEDVIEPPVNEDDTDEDRAERYYKVVSTSDNYTDITTKLREAGIPFETDNGSELLPITTIE-DIHQ  297 (305)
Q Consensus       233 AEDVee~~~~Ed~~~ed~~~~~~~i~~~p~d~~~V~~~L~~~G~~i~~s~ele~iP~~~Ve-~~~~  297 (305)
                      ||||++.    +        +.|+|+|+|++|.+|+++|++.||++.++ +++|+|+++|+ ++++
T Consensus       161 Aedv~~~----~--------~~~~v~~~~~~~~~v~~~L~~~g~~i~~s-ei~~~P~~~v~l~~e~  213 (238)
T TIGR01033       161 AEDIDVD----D--------DEFEVYTAPEELEKVKEALEAKGFPIESA-EITMIPLTTVDLDDEQ  213 (238)
T ss_pred             Cceeecc----C--------CcEEEEECHHHHHHHHHHHHHcCCCceee-EEEEecCCCcccCHHH
Confidence            9999531    1        12999999999999999999999999986 99999999999 6554

This model describes a minimally characterized protein family, restricted to bacteria excepting for some eukaryotic sequences that have possible transit peptides. YebC from E. coli is crystallized, and PA0964 from Pseudomonas aeruginosa has been shown to be a sequence-specific DNA-binding regulatory protein.

>PF01709 Transcrip_reg: Transcriptional regulator; InterPro: IPR002876 This entry represents the core region of several hypothetical proteins found in bacteria, plants, and yeast proteins

Probab=100.00  E-value=3.3e-72  Score=515.67  Aligned_cols=203  Identities=39%  Similarity=0.662  Sum_probs=180.1

Q ss_pred             chhHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHhhccC-CccceeE
Q 021961           78 RRSSKIAGRKGAQDAKKAKLYSRMGKEVISAVKKGGPNPTSNTVLAAVLEKAKELDVPKDIVERNIKRASEK-GQEAFIE  156 (305)
Q Consensus        78 ~KwsnIkh~K~a~DakKsklfsKl~keI~vAvk~GG~DP~~N~~La~aI~~AK~~nmPKd~IErAIkra~g~-~~~~~~e  156 (305)
                      +||+||||+|+++|++|+++|+||+|+|++|||+|||||+.|++|+++|++||+.||||++||||||||++. ++.+|++
T Consensus         1 sKW~nIkh~K~~~D~~ksk~f~kl~reI~~Avk~GG~DP~~N~~L~~ai~~Ak~~nmPk~~IerAIkk~~~~~~~~~~~~   80 (234)
T PF01709_consen    1 SKWSNIKHKKAAQDAKKSKLFTKLSREITVAVKEGGPDPDMNPRLRSAIEKAKKANMPKDNIERAIKKASGKSDGANYEE   80 (234)
T ss_dssp             -SCGGTSSSTTTTTTSHHHHHHHHHHHHHHHHHCC-S-GGGSHHHHHHHHHHHHTT--HHHHHHHHHHCCSTSST---EE
T ss_pred             CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCcCHHHHHHHHHHHHhCCCHHHHHHHHHhcCcCCCCcCceE
Confidence            589999999999999999999999999999999999999999999999999999999999999999999987 7778999


Q ss_pred             EEEEEEecCCcEEEEEEecCChhhHHHHHHHHHhhcCcccCCCccceecceeeEEEEeeCCCCCHHHHHHHHHHCCCccc
Q 021961          157 KVYEVYGYGGVSIVVEVLTDKITRSVAAVREVVKDCGGKMADPGSVMFKFRRARVVNIKFTDADKDQLLDIALDAGAEDV  236 (305)
Q Consensus       157 ~~YE~~GPgGvaiIVE~lTDN~nRt~s~ir~i~~K~gG~l~~~gsv~f~F~~kGvi~v~~~~~d~D~l~e~AIEaGAEDV  236 (305)
                      ++|||||||||+|||||+|||+|||+++||++|+|+||+|+++|||.|||+|+|+|.+.....++|++||+|||+|||||
T Consensus        81 ~~yEg~gP~Gvaiive~lTDN~nRt~~~ir~~~~K~gg~l~~~gsv~~~F~~kG~i~~~~~~~~~d~~~e~aIe~GaeDv  160 (234)
T PF01709_consen   81 ITYEGYGPGGVAIIVECLTDNKNRTVSDIRSIFKKNGGSLGPSGSVSFMFERKGVIEVSKKDLDEDELMEDAIEAGAEDV  160 (234)
T ss_dssp             EEEEEEETTTEEEEEEEEES-HHHHHHHHHHHHHTTT-EEE-TTSSGGGEEEEEEEEEEHCCS-HHHHHHHHHHHTESEE
T ss_pred             EEEEEEcCCCcEEEEEEeCCCHhHHHHHHHHHHHHcCceeCCCCcceeeeeeeEEEEEEeCCCChHHHHHHHHhCCCcEe
Confidence            99999999999999999999999999999999999999999999999999999999998667899999999999999999


Q ss_pred             cCCCCCCCCCcccccCceEEEEeCcccHHHHHHHHHHCCCCeeecccceeecCCCcc
Q 021961          237 IEPPVNEDDTDEDRAERYYKVVSTSDNYTDITTKLREAGIPFETDNGSELLPITTIE  293 (305)
Q Consensus       237 ee~~~~Ed~~~ed~~~~~~~i~~~p~d~~~V~~~L~~~G~~i~~s~ele~iP~~~Ve  293 (305)
                      ++.            ++.|+|+|+|.+|.+|+++|++.||++.++ +++|+|+++|+
T Consensus       161 e~~------------d~~~~~~c~p~~~~~v~~~L~~~g~~i~~~-e~~~~P~~~v~  204 (234)
T PF01709_consen  161 EED------------DGEFEFICDPSDLSAVKKALEKKGYEIESA-ELEYIPNNPVE  204 (234)
T ss_dssp             EEC------------TSEEEEEEEGGGHHHHHHHHHHTT---SEE-EEEEEESS-EE
T ss_pred             eec------------CCeEEEEECHHHHHHHHHHHHHcCCCeeEE-EEEEeCCCCcc
Confidence            741            145999999999999999999999999986 99999999999

This core region can be subdivided into three domains: a 3-helical bundle domain, and two alpha+beta domains with different folds, where domain 3 (ferredoxin-like fold) is inserted within domain 2. This core region is found in the following hypothetical proteins: YebC from Escherichia coli, HP0162 from Helicobacter pylori (Campylobacter pylori) and aq1575 from Aquifex aeolicus []. The crystal structure of a conserved hypothetical protein, Aq1575, from Aquifex aeolicus has been determined. A structural homology search reveals that this protein has a new fold with no obvious similarity to those of other proteins of known three-dimensional structure. The protein reveals a monomer consisting of three domains arranged along a pseudo threefold symmetry axis. There is a large cleft with approximate dimensions of 10 A x 10 A x 20 A in the centre of the three domains along the symmetry axis. Two possible active sites are suggested based on the structure and multiple sequence alignment. There are several highly conserved residues in these putative active sites [].; PDB: 1LFP_A 1MW7_A 1KON_A.

>KOG2972 consensus Uncharacterized conserved protein [Function unknown]

Probab=100.00  E-value=4.6e-63  Score=454.33  Aligned_cols=226  Identities=37%  Similarity=0.571  Sum_probs=208.4

Q ss_pred             ccccccccCCCccCCc-hhHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHhcCCCHHHHHH
Q 021961           63 FQVRTIRTFAPVCMGR-RSSKIAGRKGAQDAKKAKLYSRMGKEVISAVKKGGPNPTSNTVLAAVLEKAKELDVPKDIVER  141 (305)
Q Consensus        63 ~~~R~~~~~~~~~mG~-KwsnIkh~K~a~DakKsklfsKl~keI~vAvk~GG~DP~~N~~La~aI~~AK~~nmPKd~IEr  141 (305)
                      ++.|++++++..+.|| ||+||||+|+++|++|+|++.||+++|..|||.||+||..|.+|+++++.||+.+||||.||+
T Consensus        17 s~s~sv~~s~~~~sgH~kwskIk~~Kg~nD~~rsk~~nkl~~~i~~aVk~gg~np~lN~~LAtlle~ak~~~vpkd~ien   96 (276)
T KOG2972|consen   17 SRSRSVTTSGWIMSGHNKWSKIKHKKGANDQARSKQINKLSQGIILAVKQGGANPELNMRLATLLESAKKISVPKDGIEN   96 (276)
T ss_pred             CchhheecccceecccchhhhhcccccccHHHHHHHHHHHHHHHHHHHHhcCCCchhhhHHHHHHHHHHhcCCCHHHHHH
Confidence            3456777888888998 999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHhhccCCccceeEEEEEEEecCCcEEEEEEecCChhhHHHHHHHHHhhcCcccCCCccceecceeeE-EEEeeCCCCC
Q 021961          142 NIKRASEKGQEAFIEKVYEVYGYGGVSIVVEVLTDKITRSVAAVREVVKDCGGKMADPGSVMFKFRRAR-VVNIKFTDAD  220 (305)
Q Consensus       142 AIkra~g~~~~~~~e~~YE~~GPgGvaiIVE~lTDN~nRt~s~ir~i~~K~gG~l~~~gsv~f~F~~kG-vi~v~~~~~d  220 (305)
                      ||+||+++++...+++.||+||||||+||||++|||+||+++.||++|+|+||.+.  +++.|+|++|| ||.|+++..|
T Consensus        97 ~i~ras~k~~~a~e~~~ye~~gp~GV~liVealTdnknr~~~~iRs~~nk~GG~s~--~~~r~~FdkKG~Vv~V~~~~~d  174 (276)
T KOG2972|consen   97 AINRASGKEGSAVEFIEYEAMGPSGVGLIVEALTDNKNRAASSIRSIFNKHGGASA--SGVRFLFDKKGVVVNVPPEKRD  174 (276)
T ss_pred             HHHHhccCCCCceEEEEEeeecCCceEEEEEeeeccHhHHHHHHHHHHHHcCCccc--ccceeEEeccceEEecChhhcc
Confidence            99999998888888899999999999999999999999999999999999999766  46899999999 6778877788


Q ss_pred             HHHHHHHHHHCCCccccCCCCCCCCCcccccCceEEEEeCcccHHHHHHHHHHCCCCeeecccceeecCCCcc
Q 021961          221 KDQLLDIALDAGAEDVIEPPVNEDDTDEDRAERYYKVVSTSDNYTDITTKLREAGIPFETDNGSELLPITTIE  293 (305)
Q Consensus       221 ~D~l~e~AIEaGAEDVee~~~~Ed~~~ed~~~~~~~i~~~p~d~~~V~~~L~~~G~~i~~s~ele~iP~~~Ve  293 (305)
                      +|.+.-.+||+||+|+..+|+.|+|+||++  +.|+++|+|+++++|...|.+.||.+.. ++++|+|.++|+
T Consensus       175 k~vL~ie~ie~~A~d~~~~~~~e~d~eeer--~~fkiv~e~ssl~qV~~~Lr~~G~~i~d-~~le~~P~~~ve  244 (276)
T KOG2972|consen  175 KDVLNIEAIEAGAEDIVAEPVLEIDEEEER--EEFKIVTEPSSLNQVAHKLRSKGFEIKD-SGLEFIPLEEVE  244 (276)
T ss_pred             hhhhhHHHHHhcccccccCccccccccccc--ceeEEEeccchHHHHHHHhhcCCceeec-cccccccCCccc
Confidence            888888889999999999888877655543  3499999999999999999999999996 599999999999

>PRK07562 ribonucleotide-diphosphate reductase subunit alpha; Validated

Probab=98.69  E-value=2.7e-08  Score=109.08  Aligned_cols=131  Identities=21%  Similarity=0.188  Sum_probs=89.4

Q ss_pred             HHHHhhccCCCcc-ccccccccccccc-cccccccccccccccccccccccc---ccc-ccccccCCCccCCc-------
Q 021961           12 AILHRISNGVSSK-WSPNSFALSKHGL-LSRNLFSSASSISSWIPLYEVKHC---NFQ-VRTIRTFAPVCMGR-------   78 (305)
Q Consensus        12 ~~~~~~~~~~~~~-~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~---~~~-~R~~~~~~~~~mG~-------   78 (305)
                      |+|++...|+... +.||.     .+. |+..+  ..|...+|+.++.....   +.. +|+=+.--.+-.=|       
T Consensus       222 A~l~K~GGGtG~nfS~LR~-----~Ge~IsggG--~SSG~vsFmkifD~aa~aIkQGG~tRRGA~mv~LdvdHPDIeeFI  294 (1220)
T PRK07562        222 ARLFKYGSGTGSNFSNLRG-----EGEKLSGGG--KSSGLMSFLKIGDRAAGAIKSGGTTRRAAKMVIVDIDHPDIEEFI  294 (1220)
T ss_pred             HHHHhcCCeEeecccccCC-----CCCcCCCCC--cCCChhhHHHHHHHHHHHHHhCCCCccCceEEEecCCcccHHHHH
Confidence            4556655555433 34444     333 44332  34466677777664332   222 24321111111113       


Q ss_pred             hhHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHhC------CCCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHhhccC
Q 021961           79 RSSKIAGRKGAQDAKKAKLYSRMGKEVISAVKKG------GPNPTSNTVLAAVLEKAKELDVPKDIVERNIKRASEK  149 (305)
Q Consensus        79 KwsnIkh~K~a~DakKsklfsKl~keI~vAvk~G------G~DP~~N~~La~aI~~AK~~nmPKd~IErAIkra~g~  149 (305)
                      .|-+.+..|.+.+..++|+++|+.++|..|+|.|      |+||+.|++|+.+|++||+.+||++.|+|+|++|.+.
T Consensus       295 ~~K~~ee~Kvaalv~gski~~k~lk~I~~A~~~~~G~~~~~~DP~~NpaLk~aI~~Ak~~~vP~~~I~RvI~~A~qg  371 (1220)
T PRK07562        295 DWKVKEEQKVAALVTGSKIVSKHLKAIMKACVNCEGDGDDCFDPAKNPALKREIKAAKKALVPENYIKRVIQFARQG  371 (1220)
T ss_pred             HhccchhhhHHhhhhcchHHHHHHHHHHHHHHhccccccccCCccccHHHHHHHHHHHhccCCHHHHHHHHHHhhcc
Confidence            2333446899999999999999999999999998      6899999999999999999999999999999998764

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	305
1kon_A	249	Crystal Structure Of E.Coli Yebc Length = 249		2e-25
1lfp_A	249	Crystal Structure Of A Conserved Hypothetical Prote		1e-23
4f3q_A	247	Structure Of A Yebc Family Protein (Cbu_1566) From		1e-21
1mw7_A	240	X-Ray Structure Of Y162_helpy Northeast Structural		5e-11

>pdb|1KON|A Chain A, Crystal Structure Of E.Coli Yebc Length = 249

Iteration: 1
 Score =  112 bits (281), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 60/153 (39%), Positives = 95/153 (62%), Gaps = 3/153 (1%)
Query: 86  RKGAQDAKKAKLYSRMGKEVISAVKKGGPNPTSNTVLAAVLEKAKELDVPKDIVERNIKR 145
           RK AQDAK+ K+++++ +E+++A K GG +P +N  L A ++KA   ++ +D + R I R
Sbjct: 16  RKAAQDAKRGKIFTKIIRELVTAAKLGGGDPDANPRLRAAVDKALSNNMTRDTLNRAIAR 75
Query: 146 ASEKGQEAFIEKV-YEVYGYGGVSIVVEVLTDKITRSVAAVREVVKDCGGKMADPGSVMF 204
                 +A +E + YE YG GG +I++E L+D   R+VA VR     CGG +   GSV +
Sbjct: 76  GVGGDDDANMETIIYEGYGPGGTAIMIECLSDNRNRTVAEVRHAFSKCGGNLGTDGSVAY 135
Query: 205 KFRRARVVNIKFTDADKDQLLDIALDAGAEDVI 237
            F +  V  I F   D+D +++ AL+AGAEDV+
Sbjct: 136 LFSKKGV--ISFEKGDEDTIMEAALEAGAEDVV 166

>pdb|1LFP|A Chain A, Crystal Structure Of A Conserved Hypothetical Protein Aq1575 From Aquifex Aeolicus Length = 249

Iteration: 1
 Score =  107 bits (266), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 66/214 (30%), Positives = 113/214 (52%), Gaps = 14/214 (6%)
Query: 81  SKIAGRKGAQDAKKAKLYSRMGKEVISAVKKGGPNPTSNTVLAAVLEKAKELDVPKDIVE 140
           ++I  +K   DA++ KL+S++ +E+I A + GGPNP  N  L   +E+AK+ + P + +E
Sbjct: 8   AQIKHKKAKVDAQRGKLFSKLIREIIVATRLGGPNPEFNPRLRTAIEQAKKANXPWENIE 67
Query: 141 RNIKR-ASEKGQEAFIEKVYEVYGYGGVSIVVEVLTDKITRSVAAVREVVKDCGGKMADP 199
           R IK+ A E   E F E +YE Y  GGV++ V   TD   R+ + VR V    GG +   
Sbjct: 68  RAIKKGAGELEGEQFEEVIYEGYAPGGVAVXVLATTDNRNRTTSEVRHVFTKHGGNLGAS 127
Query: 200 GSVMFKFRRARVVNIKFTDADKDQLLDIALDAGAEDVIEPPVNEDDTDEDRAERYYKVVS 259
           G V + F R   + +   +  +++LL+ A++ GAEDV +P            E  + + +
Sbjct: 128 GCVSYLFERKGYIEVPAKEVSEEELLEKAIEVGAEDV-QP-----------GEEVHIIYT 175
Query: 260 TSDNYTDITTKLREAGIPFETDNGSELLPITTIE 293
             +   ++   L + G+P E    +   PI+T++
Sbjct: 176 VPEELYEVKENLEKLGVPIEKAQIT-WKPISTVQ 208

>pdb|4F3Q|A Chain A, Structure Of A Yebc Family Protein (Cbu_1566) From Coxiella Burnetii Length = 247

Iteration: 1
 Score =  100 bits (249), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 57/157 (36%), Positives = 93/157 (59%), Gaps = 2/157 (1%)
Query: 81  SKIAGRKGAQDAKKAKLYSRMGKEVISAVKKGGPNPTSNTVLAAVLEKAKELDVPKDIVE 140
           + I   K  QDAK+ K+++++ +E+  A + GG +  SN  L AV++KA   + PKD + 
Sbjct: 11  ANIKHAKARQDAKRGKVFTKLIREITVAARLGGEDIDSNPRLRAVVDKAFAANXPKDTIT 70
Query: 141 RNIKRASEKGQ-EAFIEKVYEVYGYGGVSIVVEVLTDKITRSVAAVREVVKDCGGKMADP 199
           R IKR +  G  +  +E  YE YG  GV++ V+ LTD   R+VA VR     C G +   
Sbjct: 71  RAIKRGAGSGAGDNLVEVRYEGYGPSGVAVXVDCLTDNKNRTVAEVRHAFSKCDGNLGTE 130
Query: 200 GSVMFKFRRARVVNIKFTDADKDQLLDIALDAGAEDV 236
           GSV + F++  ++     ++D++++ +IAL+ GAEDV
Sbjct: 131 GSVAYLFKQRGLITFP-PNSDEEKIXEIALEVGAEDV 166

>pdb|1MW7|A Chain A, X-Ray Structure Of Y162_helpy Northeast Structural Genomics Consortium Target Pr6 Length = 240

Iteration: 1
 Score = 65.1 bits (157), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 55/173 (31%), Positives = 83/173 (47%), Gaps = 15/173 (8%)
Query: 76  MGRRSSKIAGRKGAQDAKKAKLYSRMGKEVISAVKKGGPNPTSNTVLAAVLEKAKELDVP 135
           MGR        K  +  K +K++ ++ K +  A K GG  P +N  L   +  AK  ++P
Sbjct: 1   MGRAFEYRRAAKEKRWDKMSKVFPKLAKAITLAAKDGGSEPDTNAKLRTAILNAKAQNMP 60
Query: 136 KDIVERNIKRASEKGQEAFIEKVYEVYGYGGVSIVVEVLTDKITRSVAAVREVV-KDCGG 194
           KD ++  IKRAS K +    E  YE     GV I++E +TD  TR++A ++    K  G 
Sbjct: 61  KDNIDAAIKRASSK-EGNLSEITYEGKANFGVLIIMECMTDNPTRTIANLKSYFNKTQGA 119
Query: 195 KMADPGSVMFKFRRARVV--------NIKFTDADKDQLLDIAL-DAGAEDVIE 238
            +   GS+ F F R  V         N+K +  D    L+ AL D G E++ E
Sbjct: 120 SIVPNGSLEFMFNRKSVFECLKNEVENLKLSLED----LEFALIDYGLEELEE 168

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	305
1lfp_A	249	Hypothetical protein AQ_1575; NEW fold, thermostab	6e-56
1kon_A	249	Protein YEBC, YEBC; alpha/beta, two-domains, montr	2e-55
4f3q_A	247	Transcriptional regulatory protein CBU_1566; YEBC	3e-55
1mw7_A	240	Hypothetical protein HP0162; structural genomics,	3e-53

>1lfp_A Hypothetical protein AQ_1575; NEW fold, thermostability, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; 1.72A {Aquifex aeolicus} SCOP: e.39.1.1 Length = 249

 Score =  180 bits (459), Expect = 6e-56
 Identities = 64/214 (29%), Positives = 113/214 (52%), Gaps = 14/214 (6%)

Query: 81  SKIAGRKGAQDAKKAKLYSRMGKEVISAVKKGGPNPTSNTVLAAVLEKAKELDVPKDIVE 140
           ++I  +K   DA++ KL+S++ +E+I A + GGPNP  N  L   +E+AK+ ++P + +E
Sbjct: 8   AQIKHKKAKVDAQRGKLFSKLIREIIVATRLGGPNPEFNPRLRTAIEQAKKANMPWENIE 67

Query: 141 RNIKRAS-EKGQEAFIEKVYEVYGYGGVSIVVEVLTDKITRSVAAVREVVKDCGGKMADP 199
           R IK+ + E   E F E +YE Y  GGV+++V   TD   R+ + VR V    GG +   
Sbjct: 68  RAIKKGAGELEGEQFEEVIYEGYAPGGVAVMVLATTDNRNRTTSEVRHVFTKHGGNLGAS 127

Query: 200 GSVMFKFRRARVVNIKFTDADKDQLLDIALDAGAEDVIEPPVNEDDTDEDRAERYYKVVS 259
           G V + F R   + +   +  +++LL+ A++ GAEDV           E+     + + +
Sbjct: 128 GCVSYLFERKGYIEVPAKEVSEEELLEKAIEVGAEDVQ--------PGEE----VHIIYT 175

Query: 260 TSDNYTDITTKLREAGIPFETDNGSELLPITTIE 293
             +   ++   L + G+P E        PI+T++
Sbjct: 176 VPEELYEVKENLEKLGVPIE-KAQITWKPISTVQ 208

>1kon_A Protein YEBC, YEBC; alpha/beta, two-domains, montreal-kingston bacterial structural genomics initiative, BSGI, structural genomics; 2.20A {Escherichia coli} SCOP: e.39.1.1 Length = 249

 Score =  178 bits (455), Expect = 2e-55
 Identities = 66/216 (30%), Positives = 111/216 (51%), Gaps = 19/216 (8%)

Query: 81  SKIAGRKGAQDAKKAKLYSRMGKEVISAVKKGGPNPTSNTVLAAVLEKAKELDVPKDIVE 140
           +    RK AQDAK+ K+++++ +E+++A K GG +P +N  L A ++KA   ++ +D + 
Sbjct: 11  ANTRHRKAAQDAKRGKIFTKIIRELVTAAKLGGGDPDANPRLRAAVDKALSNNMTRDTLN 70

Query: 141 RNIKRAS-EKGQEAFIEKVYEVYGYGGVSIVVEVLTDKITRSVAAVREVVKDCGGKMADP 199
           R I R             +YE YG GG +I++E L+D   R+VA VR     CGG +   
Sbjct: 71  RAIARGVGGDDDANMETIIYEGYGPGGTAIMIECLSDNRNRTVAEVRHAFSKCGGNLGTD 130

Query: 200 GSVMFKFRRARVVNIKFTDADKDQLLDIALDAGAEDVIEPPVNEDDTDEDRAERYYKVVS 259
           GSV + F +  V  I F   D+D +++ AL+AGAEDV+     +D            V +
Sbjct: 131 GSVAYLFSKKGV--ISFEKGDEDTIMEAALEAGAEDVVT---YDDG--------AIDVYT 177

Query: 260 TSDNYTDITTKLREAGIPFETDNGSEL--LPITTIE 293
             +    +   L  AG+  ++   +E+  +P T  +
Sbjct: 178 AWEEMGKVRDALEAAGLKADS---AEVSMIPSTKAD 210

>4f3q_A Transcriptional regulatory protein CBU_1566; YEBC family; 2.15A {Coxiella burnetii} Length = 247

 Score =  178 bits (455), Expect = 3e-55
 Identities = 63/214 (29%), Positives = 112/214 (52%), Gaps = 14/214 (6%)

Query: 81  SKIAGRKGAQDAKKAKLYSRMGKEVISAVKKGGPNPTSNTVLAAVLEKAKELDVPKDIVE 140
           + I   K  QDAK+ K+++++ +E+  A + GG +  SN  L AV++KA   ++PKD + 
Sbjct: 11  ANIKHAKARQDAKRGKVFTKLIREITVAARLGGEDIDSNPRLRAVVDKAFAANMPKDTIT 70

Query: 141 RNIKRAS-EKGQEAFIEKVYEVYGYGGVSIVVEVLTDKITRSVAAVREVVKDCGGKMADP 199
           R IKR +     +  +E  YE YG  GV+++V+ LTD   R+VA VR     C G +   
Sbjct: 71  RAIKRGAGSGAGDNLVEVRYEGYGPSGVAVMVDCLTDNKNRTVAEVRHAFSKCDGNLGTE 130

Query: 200 GSVMFKFRRARVVNIKFTDADKDQLLDIALDAGAEDVIEPPVNEDDTDEDRAERYYKVVS 259
           GSV + F++  ++     ++D++++++IAL+ GAEDV     N+D            V +
Sbjct: 131 GSVAYLFKQRGLITFP-PNSDEEKIMEIALEVGAEDVTT---NDDG--------SIDVTT 178

Query: 260 TSDNYTDITTKLREAGIPFETDNGSELLPITTIE 293
             +++  I   ++ A +         +L  T + 
Sbjct: 179 LPEDFEKIRNAMKAADLNPS-HAEVTVLASTEVG 211

>1mw7_A Hypothetical protein HP0162; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.00A {Helicobacter pylori} SCOP: e.39.1.1 Length = 240

 Score =  173 bits (440), Expect = 3e-53
 Identities = 57/227 (25%), Positives = 95/227 (41%), Gaps = 26/227 (11%)

Query: 76  MGRRSSKIAGRKGAQDA---KKAKLYSRMGKEVISAVKKGGPNPTSNTVLAAVLEKAKEL 132
           MGR       R+ A++    K +K++ ++ K +  A K GG  P +N  L   +  AK  
Sbjct: 1   MGR---AFEYRRAAKEKRWDKMSKVFPKLAKAITLAAKDGGSEPDTNAKLRTAILNAKAQ 57

Query: 133 DVPKDIVERNIKRASEKGQEAFIEKVYEVYGYGGVSIVVEVLTDKITRSVAAVREVV-KD 191
           ++PKD ++  IKRAS K      E  YE     GV I++E +TD  TR++A ++    K 
Sbjct: 58  NMPKDNIDAAIKRASSKE-GNLSEITYEGKANFGVLIIMECMTDNPTRTIANLKSYFNKT 116

Query: 192 CGGKMADPGSVMFKFRRARVVNIKFTDADK-----DQLLDIALDAGAEDVIEPPVNEDDT 246
            G  +   GS+ F F R  V      + +      + L    +D G E++ E        
Sbjct: 117 QGASIVPNGSLEFMFNRKSVFECLKNEVENLKLSLEDLEFALIDYGLEELEE-------- 168

Query: 247 DEDRAERYYKVVSTSDNYTDITTKLREAGIPFETDNGSELLPITTIE 293
            ED       +    +++  +        +P       + +  T IE
Sbjct: 169 VED----KIIIRGDYNSFKLLNEGFESLKLPIL-KASLQRIATTPIE 210

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	305
4f3q_A	247	Transcriptional regulatory protein CBU_1566; YEBC	100.0
1lfp_A	249	Hypothetical protein AQ_1575; NEW fold, thermostab	100.0
1kon_A	249	Protein YEBC, YEBC; alpha/beta, two-domains, montr	100.0
1mw7_A	240	Hypothetical protein HP0162; structural genomics,	100.0

>4f3q_A Transcriptional regulatory protein CBU_1566; YEBC family; 2.15A {Coxiella burnetii}

Probab=100.00  E-value=2.8e-77  Score=551.69  Aligned_cols=210  Identities=30%  Similarity=0.538  Sum_probs=192.4

Q ss_pred             cCCc-hhHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHhhccC-Ccc
Q 021961           75 CMGR-RSSKIAGRKGAQDAKKAKLYSRMGKEVISAVKKGGPNPTSNTVLAAVLEKAKELDVPKDIVERNIKRASEK-GQE  152 (305)
Q Consensus        75 ~mG~-KwsnIkh~K~a~DakKsklfsKl~keI~vAvk~GG~DP~~N~~La~aI~~AK~~nmPKd~IErAIkra~g~-~~~  152 (305)
                      ++|| ||+||||+|+++|++|+|+|+||+|+|++|+|+|||||+.||+||.+|++||+.|||||+||||||||+|. ++.
T Consensus         4 maGHsKWanIkh~K~~~Dakr~kiftKl~reI~vAak~GG~DP~~N~~Lr~aI~~Ak~~nmPkd~IerAIkk~~g~~~~~   83 (247)
T 4f3q_A            4 MAGHSKWANIKHAKARQDAKRGKVFTKLIREITVAARLGGEDIDSNPRLRAVVDKAFAANMPKDTITRAIKRGAGSGAGD   83 (247)
T ss_dssp             -----CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSCGGGCHHHHHHHHHHHHTTCCHHHHHHHHHHCC-----C
T ss_pred             cccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCccCHHHHHHHHHHHHhCCCHHHHHHHHHHhcCCCCcC
Confidence            5666 99999999999999999999999999999999999999999999999999999999999999999999986 567


Q ss_pred             ceeEEEEEEEecCCcEEEEEEecCChhhHHHHHHHHHhhcCcccCCCccceecceeeEEEEeeCCCCCHHHHHHHHHHCC
Q 021961          153 AFIEKVYEVYGYGGVSIVVEVLTDKITRSVAAVREVVKDCGGKMADPGSVMFKFRRARVVNIKFTDADKDQLLDIALDAG  232 (305)
Q Consensus       153 ~~~e~~YE~~GPgGvaiIVE~lTDN~nRt~s~ir~i~~K~gG~l~~~gsv~f~F~~kGvi~v~~~~~d~D~l~e~AIEaG  232 (305)
                      +|+|++|||||||||+|||||||||+|||+++||++|+|+||+||++|||.|||+|+|+|.+.+. .|+|++||.|||+|
T Consensus        84 ~yeei~YEgyGPgGvaviVe~lTDN~nRT~~~vR~~f~K~gG~lg~~GsV~~~F~~kG~i~~~~~-~~~d~~~e~aieaG  162 (247)
T 4f3q_A           84 NLVEVRYEGYGPSGVAVMVDCLTDNKNRTVAEVRHAFSKCDGNLGTEGSVAYLFKQRGLITFPPN-SDEEKIMEIALEVG  162 (247)
T ss_dssp             CCEEEEEEEECGGGCEEEEEEEESCHHHHHHHHHHHHHHTTCEECCTTSSGGGEEEEEEEEECTT-CCHHHHHHHHHHHT
T ss_pred             CceEEEEEEEcCCCeEEEEEEeCCCHhHHHHHHHHHHHhcCceECCCCceeEEEeeeEEEEECCC-CCHHHHHHHHHhCC
Confidence            89999999999999999999999999999999999999999999999999999999999999864 79999999999999


Q ss_pred             CccccCCCCCCCCCcccccCceEEEEeCcccHHHHHHHHHHCCCCeeecccceeecCCCcc-chhh
Q 021961          233 AEDVIEPPVNEDDTDEDRAERYYKVVSTSDNYTDITTKLREAGIPFETDNGSELLPITTIE-DIHQ  297 (305)
Q Consensus       233 AEDVee~~~~Ed~~~ed~~~~~~~i~~~p~d~~~V~~~L~~~G~~i~~s~ele~iP~~~Ve-~~~~  297 (305)
                      ||||++.   |        ++.|+|+|+|++|.+|+++|++.||++.++ +++|+|+++|+ ++++
T Consensus       163 AeDv~~~---e--------dg~~~v~t~p~~~~~V~~aL~~~g~~~~~a-ei~~~P~~~v~l~~e~  216 (247)
T 4f3q_A          163 AEDVTTN---D--------DGSIDVTTLPEDFEKIRNAMKAADLNPSHA-EVTVLASTEVGLDKDS  216 (247)
T ss_dssp             CSEEEEC---T--------TSCEEEEECGGGHHHHHHHHHHTTCCCSEE-EEEEEESSCEECCHHH
T ss_pred             Cceeeec---C--------CceEEEEECHHHHHHHHHHHHHcCCCeeEE-EEEEecCCccccCHHH
Confidence            9999852   1        146999999999999999999999999886 99999999999 5443

>1lfp_A Hypothetical protein AQ_1575; NEW fold, thermostability, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; 1.72A {Aquifex aeolicus} SCOP: e.39.1.1

Probab=100.00  E-value=3.4e-77  Score=551.45  Aligned_cols=206  Identities=31%  Similarity=0.555  Sum_probs=193.4

Q ss_pred             cCCc-hhHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHhhccC-Ccc
Q 021961           75 CMGR-RSSKIAGRKGAQDAKKAKLYSRMGKEVISAVKKGGPNPTSNTVLAAVLEKAKELDVPKDIVERNIKRASEK-GQE  152 (305)
Q Consensus        75 ~mG~-KwsnIkh~K~a~DakKsklfsKl~keI~vAvk~GG~DP~~N~~La~aI~~AK~~nmPKd~IErAIkra~g~-~~~  152 (305)
                      +||| ||+||||+|+++|++|+|+|+||+|+|++|+|+|||||+.||+||.+|++||+.|||||+||||||||+|. ++.
T Consensus         1 MaGHsKWanIkh~K~~~Dakr~kiftKl~reI~vAak~GG~DP~~N~~Lr~aI~kAk~~nmPkd~IerAIkk~~G~~~~~   80 (249)
T 1lfp_A            1 MAGHSHWAQIKHKKAKVDAQRGKLFSKLIREIIVATRLGGPNPEFNPRLRTAIEQAKKANMPWENIERAIKKGAGELEGE   80 (249)
T ss_dssp             ----CCSCCSSSSSSCTTTSHHHHHHHHHHHHHHHHHHHCSCGGGCHHHHHHHHHHHHTTCCHHHHHHHHHHHHSCSSSC
T ss_pred             CCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCcccCHHHHHHHHHHHHhCCCHHHHHHHHHHhcCCCccc
Confidence            5786 99999999999999999999999999999999999999999999999999999999999999999999987 556


Q ss_pred             ceeEEEEEEEecCCcEEEEEEecCChhhHHHHHHHHHhhcCcccCCCccceecceeeEEEEeeCCCCCHHHHHHHHHHCC
Q 021961          153 AFIEKVYEVYGYGGVSIVVEVLTDKITRSVAAVREVVKDCGGKMADPGSVMFKFRRARVVNIKFTDADKDQLLDIALDAG  232 (305)
Q Consensus       153 ~~~e~~YE~~GPgGvaiIVE~lTDN~nRt~s~ir~i~~K~gG~l~~~gsv~f~F~~kGvi~v~~~~~d~D~l~e~AIEaG  232 (305)
                      +|++++|||||||||+|||||||||+|||+++||++|+|+||+||++|||.|||+|+|+|.+.++..++|++||+|||+|
T Consensus        81 ~~eei~YEgyGPgGvaiiVe~lTDN~nRt~~~vR~~f~K~GG~lg~~GsV~~mF~~kG~i~~~~~~~~ed~~le~aleaG  160 (249)
T 1lfp_A           81 QFEEVIYEGYAPGGVAVMVLATTDNRNRTTSEVRHVFTKHGGNLGASGCVSYLFERKGYIEVPAKEVSEEELLEKAIEVG  160 (249)
T ss_dssp             CCEEEEEEEEETTTEEEEEEEEESCHHHHHHHHHHHHHHTTCEECCTTSSGGGEEEEEEEEEEGGGSCHHHHHHHHHHHT
T ss_pred             ceEEEEEEEECCCceEEEEEEecCCHHHHHHHHHHHHhhcCceecCCCchhhhhheeeEEEEcCCCCCHHHHHHHHHhcC
Confidence            89999999999999999999999999999999999999999999999999999999999999865579999999999999


Q ss_pred             CccccCCCCCCCCCcccccCceEEEEeCcccHHHHHHHHHHCCCCeeecccceeecCCCcc
Q 021961          233 AEDVIEPPVNEDDTDEDRAERYYKVVSTSDNYTDITTKLREAGIPFETDNGSELLPITTIE  293 (305)
Q Consensus       233 AEDVee~~~~Ed~~~ed~~~~~~~i~~~p~d~~~V~~~L~~~G~~i~~s~ele~iP~~~Ve  293 (305)
                      ||||++    +        ++.|+|+|+|++|.+|+++|+++||++.++ +++|+|+++|+
T Consensus       161 AeDv~~----e--------~~~~~v~t~p~~~~~V~~aL~~~g~~~~~a-ei~~~P~~~v~  208 (249)
T 1lfp_A          161 AEDVQP----G--------EEVHIIYTVPEELYEVKENLEKLGVPIEKA-QITWKPISTVQ  208 (249)
T ss_dssp             CSEEEC----C--------SSEEEEEECGGGHHHHHHHHHTTTCCCSEE-EEEEEESSCEE
T ss_pred             Cceeec----C--------CceEEEEECHHHHHHHHHHHHHcCCCeeee-eeEECCCCcee
Confidence            999973    1        246999999999999999999999999886 99999999998

>1kon_A Protein YEBC, YEBC; alpha/beta, two-domains, montreal-kingston bacterial structural genomics initiative, BSGI, structural genomics; 2.20A {Escherichia coli} SCOP: e.39.1.1

Probab=100.00  E-value=2.8e-77  Score=552.03  Aligned_cols=210  Identities=30%  Similarity=0.551  Sum_probs=186.1

Q ss_pred             CccCCc-hhHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHhhccC-C
Q 021961           73 PVCMGR-RSSKIAGRKGAQDAKKAKLYSRMGKEVISAVKKGGPNPTSNTVLAAVLEKAKELDVPKDIVERNIKRASEK-G  150 (305)
Q Consensus        73 ~~~mG~-KwsnIkh~K~a~DakKsklfsKl~keI~vAvk~GG~DP~~N~~La~aI~~AK~~nmPKd~IErAIkra~g~-~  150 (305)
                      .++||| ||+||||+|+++|++|+|+|+||+|+|++|+|+|||||+.||+||.+|++||+.|||||+||||||||+|. +
T Consensus         2 ~~MaGHsKWanIkh~K~~~Dakr~kiftKl~keI~vAak~GG~DP~~N~~Lr~aI~kAk~~nmPkd~IerAIkk~~G~~~   81 (249)
T 1kon_A            2 SHMAGHSKWANTRHRKAAQDAKRGKIFTKIIRELVTAAKLGGGDPDANPRLRAAVDKALSNNMTRDTLNRAIARGVGGDD   81 (249)
T ss_dssp             ----CCCSGGGTSSSTTTTTSCHHHHHHHHHHHHHHHHHC-----CCSTTTHHHHHHHHHTTCCHHHHHHHHSCC-----
T ss_pred             CccccccHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhCCCCcccCHHHHHHHHHHHHhCCCHHHHHHHHHhccCCCc
Confidence            357886 99999999999999999999999999999999999999999999999999999999999999999999987 5


Q ss_pred             ccceeEEEEEEEecCCcEEEEEEecCChhhHHHHHHHHHhhcCcccCCCccceecceeeEEEEeeCCCCCHHHHHHHHHH
Q 021961          151 QEAFIEKVYEVYGYGGVSIVVEVLTDKITRSVAAVREVVKDCGGKMADPGSVMFKFRRARVVNIKFTDADKDQLLDIALD  230 (305)
Q Consensus       151 ~~~~~e~~YE~~GPgGvaiIVE~lTDN~nRt~s~ir~i~~K~gG~l~~~gsv~f~F~~kGvi~v~~~~~d~D~l~e~AIE  230 (305)
                      +.+|++++|||||||||+|||||||||+|||+++||++|+|+||+||++|||.|||+|+|+|.+.+ + ++|++||+|||
T Consensus        82 ~~~~eei~YEgyGPgGvaiiVe~lTDN~nRt~~~vR~~f~K~GG~lg~~GsV~~~F~~kG~i~~~~-~-~ed~~le~ale  159 (249)
T 1kon_A           82 DANMETIIYEGYGPGGTAIMIECLSDNRNRTVAEVRHAFSKCGGNLGTDGSVAYLFSKKGVISFEK-G-DEDTIMEAALE  159 (249)
T ss_dssp             -CCCEEEEEEEEETTTEEEEEEEEESCHHHHHHHHHHHHHTTTCEECCTTSSGGGEEEEEEEEESS-S-CHHHHHHHHHH
T ss_pred             ccCeEEEEEEEECCCceEEEEEEecCCHHHHHHHHHHHHhhcCceecCCCchhhhhheeeEEEECC-C-CHHHHHHHHHh
Confidence            568999999999999999999999999999999999999999999999999999999999999985 3 89999999999


Q ss_pred             CCCccccCCCCCCCCCcccccCceEEEEeCcccHHHHHHHHHHCCCCeeecccceeecCCCcc-chh
Q 021961          231 AGAEDVIEPPVNEDDTDEDRAERYYKVVSTSDNYTDITTKLREAGIPFETDNGSELLPITTIE-DIH  296 (305)
Q Consensus       231 aGAEDVee~~~~Ed~~~ed~~~~~~~i~~~p~d~~~V~~~L~~~G~~i~~s~ele~iP~~~Ve-~~~  296 (305)
                      +|||||+..   +        ++.|+|+|+|++|.+|+++|+++||++.++ +++|+|+++|+ +++
T Consensus       160 aGAeDv~~~---e--------~~~~~v~t~p~~~~~V~~aL~~~g~~~~~a-ei~~~P~~~v~l~~e  214 (249)
T 1kon_A          160 AGAEDVVTY---D--------DGAIDVYTAWEEMGKVRDALEAAGLKADSA-EVSMIPSTKADMDAE  214 (249)
T ss_dssp             HTCSEEEEC---T--------TSCEEEEEEGGGHHHHHHHHHHTTCCCSEE-EEEEEESSCCCCCTT
T ss_pred             CCCceeeec---C--------CceEEEEECHHHHHHHHHHHHHcCCCeeee-eeEECCCCceecCHH
Confidence            999999741   1        246999999999999999999999999886 99999999999 443

>1mw7_A Hypothetical protein HP0162; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.00A {Helicobacter pylori} SCOP: e.39.1.1

Probab=100.00  E-value=1.4e-76  Score=545.05  Aligned_cols=208  Identities=26%  Similarity=0.359  Sum_probs=177.3

Q ss_pred             CCchhHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHhhccCCcccee
Q 021961           76 MGRRSSKIAGRKGAQDAKKAKLYSRMGKEVISAVKKGGPNPTSNTVLAAVLEKAKELDVPKDIVERNIKRASEKGQEAFI  155 (305)
Q Consensus        76 mG~KwsnIkh~K~a~DakKsklfsKl~keI~vAvk~GG~DP~~N~~La~aI~~AK~~nmPKd~IErAIkra~g~~~~~~~  155 (305)
                      ||+||+||||+|+++|++|+|+|+||+|+|++|||+|||||+.||+||.+|++||+.|||||+||||||||+|. +.+|+
T Consensus         1 aGsKWanIkh~K~~~Dakr~k~ftKl~keI~vAak~GG~DP~~N~~Lr~aI~kAk~~nmPkd~IerAIkk~~g~-~~~~e   79 (240)
T 1mw7_A            1 MGRAFEYRRAAKEKRWDKMSKVFPKLAKAITLAAKDGGSEPDTNAKLRTAILNAKAQNMPKDNIDAAIKRASSK-EGNLS   79 (240)
T ss_dssp             --------------------CCHHHHHHHHHHHHHTTCSCGGGCHHHHHHHHHHHHHTCCHHHHHHHHHHTTST-TCCCE
T ss_pred             CCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCcccCHHHHHHHHHHHHhCCCHHHHHHHHHHhcCC-CCCeE
Confidence            68999999999999999999999999999999999999999999999999999999999999999999999998 77899


Q ss_pred             EEEEEEEecCCcEEEEEEecCChhhHHHHHHHHHhhcC-cccCCCccceecceeeEEEEeeC----C-CCCHHHHHHHHH
Q 021961          156 EKVYEVYGYGGVSIVVEVLTDKITRSVAAVREVVKDCG-GKMADPGSVMFKFRRARVVNIKF----T-DADKDQLLDIAL  229 (305)
Q Consensus       156 e~~YE~~GPgGvaiIVE~lTDN~nRt~s~ir~i~~K~g-G~l~~~gsv~f~F~~kGvi~v~~----~-~~d~D~l~e~AI  229 (305)
                      +++|||||||||+|||||||||+|||+++||++|+|+| |+||++|||.|||+|+|+|.+.+    . +.++|++||+||
T Consensus        80 ei~YEgyGPgGvaiiVe~lTDN~nRt~~~vR~~f~K~g~G~lg~~GsV~~~F~~kG~i~~~~~~~~~~~~~ed~~le~al  159 (240)
T 1mw7_A           80 EITYEGKANFGVLIIMECMTDNPTRTIANLKSYFNKTQGASIVPNGSLEFMFNRKSVFECLKNEVENLKLSLEDLEFALI  159 (240)
T ss_dssp             EEEEEEEETTTEEEEEEEEESCHHHHHHHHHHHHTTSTTCEEECTTTTTTSEEEEEEEEEEHHHHHHTTCCHHHHHHHHG
T ss_pred             EEEEEEECCCceEEEEEEecCCHHHHHHHHHHHHhhcCCeeeCCCCcchhhheeeeEEEEecCccccCCCCHHHHHHHHH
Confidence            99999999999999999999999999999999999999 99999999999999999999985    2 369999999999


Q ss_pred             HCCCccccCCCCCCCCCcccccCceEEEEeCcccHHHHHHHHHHCCCCeeecccceeecCCCcc-chhh
Q 021961          230 DAGAEDVIEPPVNEDDTDEDRAERYYKVVSTSDNYTDITTKLREAGIPFETDNGSELLPITTIE-DIHQ  297 (305)
Q Consensus       230 EaGAEDVee~~~~Ed~~~ed~~~~~~~i~~~p~d~~~V~~~L~~~G~~i~~s~ele~iP~~~Ve-~~~~  297 (305)
                      |+|||||++    +        ++.|+|+|+|++|.+|+++|+++||++.++ +++|+|+++|+ ++++
T Consensus       160 eaGAeDv~~----e--------~~~~~v~t~p~~~~~V~~aL~~~g~~~~~a-ei~~~P~~~v~l~~e~  215 (240)
T 1mw7_A          160 DYGLEELEE----V--------EDKIIIRGDYNSFKLLNEGFESLKLPILKA-SLQRIATTPIELNDEQ  215 (240)
T ss_dssp             GGTEEEEEE----E--------TTEEEEEEEGGGHHHHHHHHHHTTCCCSEE-EEEEEESSCBCCCHHH
T ss_pred             HCCCceeec----C--------CceEEEEECHHHHHHHHHHHHHcCCCeeee-eeEeCCCCCcccCHHH
Confidence            999999973    1        246999999999999999999999999886 99999999999 5443

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	305
d1kona_	244	e.39.1.1 (A:) Hypothetical protein YebC {Escherich	3e-43
d1lfpa_	243	e.39.1.1 (A:) Hypothetical protein aq1575 {Aquifex	1e-36
d1mw7a_	220	e.39.1.1 (A:) Hypothetical protein HP0162 {Helicob	4e-26

>d1kona_ e.39.1.1 (A:) Hypothetical protein YebC {Escherichia coli [TaxId: 562]} Length = 244

class: Multi-domain proteins (alpha and beta)
fold: YebC-like
superfamily: YebC-like
family: YebC-like
domain: Hypothetical protein YebC
species: Escherichia coli [TaxId: 562]

 Score =  146 bits (370), Expect = 3e-43
 Identities = 62/214 (28%), Positives = 106/214 (49%), Gaps = 15/214 (7%)

Query: 81  SKIAGRKGAQDAKKAKLYSRMGKEVISAVKKGGPNPTSNTVLAAVLEKAKELDVPKDIVE 140
           +    RK AQDAK+ K+++++ +E+++A K GG +P +N  L A ++KA   ++ +D + 
Sbjct: 6   ANTRHRKAAQDAKRGKIFTKIIRELVTAAKLGGGDPDANPRLRAAVDKALSNNMTRDTLN 65

Query: 141 RNIKRASEKGQEA-FIEKVYEVYGYGGVSIVVEVLTDKITRSVAAVREVVKDCGGKMADP 199
           R I R      +A     +YE YG GG +I++E L+D   R+VA VR     CGG +   
Sbjct: 66  RAIARGVGGDDDANMETIIYEGYGPGGTAIMIECLSDNRNRTVAEVRHAFSKCGGNLGTD 125

Query: 200 GSVMFKFRRARVVNIKFTDADKDQLLDIALDAGAEDVIEPPVNEDDTDEDRAERYYKVVS 259
           GSV   +  ++   I F   D+D +++ AL+AGA       V   D           V +
Sbjct: 126 GSV--AYLFSKKGVISFEKGDEDTIMEAALEAGA-----EDVVTYDDG------AIDVYT 172

Query: 260 TSDNYTDITTKLREAGIPFETDNGSELLPITTIE 293
             +    +   L  AG+  ++     ++P T  +
Sbjct: 173 AWEEMGKVRDALEAAGLKADSA-EVSMIPSTKAD 205

>d1lfpa_ e.39.1.1 (A:) Hypothetical protein aq1575 {Aquifex aeolicus [TaxId: 63363]} Length = 243

class: Multi-domain proteins (alpha and beta)
fold: YebC-like
superfamily: YebC-like
family: YebC-like
domain: Hypothetical protein aq1575
species: Aquifex aeolicus [TaxId: 63363]

 Score =  129 bits (324), Expect = 1e-36
 Identities = 58/214 (27%), Positives = 108/214 (50%), Gaps = 14/214 (6%)

Query: 81  SKIAGRKGAQDAKKAKLYSRMGKEVISAVKKGGPNPTSNTVLAAVLEKAKELDVPKDIVE 140
           ++I  +K   DA++ KL+S++ +E+I A + GGPNP  N  L   +E+AK+ ++P + +E
Sbjct: 4   AQIKHKKAKVDAQRGKLFSKLIREIIVATRLGGPNPEFNPRLRTAIEQAKKANMPWENIE 63

Query: 141 RNIKRASEKGQEAFIEKV-YEVYGYGGVSIVVEVLTDKITRSVAAVREVVKDCGGKMADP 199
           R IK+ + + +    E+V YE Y  GGV+++V   TD   R+ + VR V    GG +   
Sbjct: 64  RAIKKGAGELEGEQFEEVIYEGYAPGGVAVMVLATTDNRNRTTSEVRHVFTKHGGNLGAS 123

Query: 200 GSVMFKFRRARVVNIKFTDADKDQLLDIALDAGAEDVIEPPVNEDDTDEDRAERYYKVVS 259
           G V + F R   + +   +  +++LL+ A++                D    E  + + +
Sbjct: 124 GCVSYLFERKGYIEVPAKEVSEEELLEKAIEV------------GAEDVQPGEEVHIIYT 171

Query: 260 TSDNYTDITTKLREAGIPFETDNGSELLPITTIE 293
             +   ++   L + G+P E        PI+T++
Sbjct: 172 VPEELYEVKENLEKLGVPIEKA-QITWKPISTVQ 204

>d1mw7a_ e.39.1.1 (A:) Hypothetical protein HP0162 {Helicobacter pylori [TaxId: 210]} Length = 220

class: Multi-domain proteins (alpha and beta)
fold: YebC-like
superfamily: YebC-like
family: YebC-like
domain: Hypothetical protein HP0162
species: Helicobacter pylori [TaxId: 210]

 Score =  100 bits (251), Expect = 4e-26
 Identities = 49/200 (24%), Positives = 81/200 (40%), Gaps = 12/200 (6%)

Query: 96  KLYSRMGKEVISAVKKGGPNPTSNTVLAAVLEKAKELDVPKDIVERNIKRASEKGQEAFI 155
           K++ ++ K +  A K GG  P +N  L   +  AK  ++PKD ++  IKRAS K      
Sbjct: 1   KVFPKLAKAITLAAKDGGSEPDTNAKLRTAILNAKAQNMPKDNIDAAIKRASSKE-GNLS 59

Query: 156 EKVYEVYGYGGVSIVVEVLTDKITRSVAAVREVVKDC-GGKMADPGSVMFKFRRARVVNI 214
           E  YE     GV I++E +TD  TR++A ++       G  +   GS+ F F R  V   
Sbjct: 60  EITYEGKANFGVLIIMECMTDNPTRTIANLKSYFNKTQGASIVPNGSLEFMFNRKSVFEC 119

Query: 215 KFTDADKDQLLDIALDAGAEDV-IEPPVNEDDTDEDRAERYYKVVSTSDNYTDITTKLRE 273
              + +  +L    L+    D  +E     +D    R +           +  +      
Sbjct: 120 LKNEVENLKLSLEDLEFALIDYGLEELEEVEDKIIIRGDYNS--------FKLLNEGFES 171

Query: 274 AGIPFETDNGSELLPITTIE 293
             +P       + +  T IE
Sbjct: 172 LKLPILKA-SLQRIATTPIE 190

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	305
d1kona_	244	Hypothetical protein YebC {Escherichia coli [TaxId	100.0
d1lfpa_	243	Hypothetical protein aq1575 {Aquifex aeolicus [Tax	100.0
d1mw7a_	220	Hypothetical protein HP0162 {Helicobacter pylori [	100.0

>d1kona_ e.39.1.1 (A:) Hypothetical protein YebC {Escherichia coli [TaxId: 562]}

class: Multi-domain proteins (alpha and beta)
fold: YebC-like
superfamily: YebC-like
family: YebC-like
domain: Hypothetical protein YebC
species: Escherichia coli [TaxId: 562]

Probab=100.00  E-value=5e-74  Score=526.29  Aligned_cols=206  Identities=32%  Similarity=0.568  Sum_probs=185.8

Q ss_pred             Cc-hhHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHhhccCC-ccce
Q 021961           77 GR-RSSKIAGRKGAQDAKKAKLYSRMGKEVISAVKKGGPNPTSNTVLAAVLEKAKELDVPKDIVERNIKRASEKG-QEAF  154 (305)
Q Consensus        77 G~-KwsnIkh~K~a~DakKsklfsKl~keI~vAvk~GG~DP~~N~~La~aI~~AK~~nmPKd~IErAIkra~g~~-~~~~  154 (305)
                      || ||+||||+|+++|++|+|+|+||+|+|++|||+|||||+.|++||++|++||+.||||++||||||||+|.. ..+|
T Consensus         1 GHsKW~nIkh~K~a~D~~k~k~f~k~~k~I~~A~k~GG~DP~~N~~L~~ai~~Ak~~nmPkd~IeraIkk~~g~~~~~~~   80 (244)
T d1kona_           1 GHSKWANTRHRKAAQDAKRGKIFTKIIRELVTAAKLGGGDPDANPRLRAAVDKALSNNMTRDTLNRAIARGVGGDDDANM   80 (244)
T ss_dssp             CCCSGGGTSSSTTTTTSCHHHHHHHHHHHHHHHHHC-----CCSTTTHHHHHHHHHTTCCHHHHHHHHSCC------CCC
T ss_pred             CCchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCccCHHHHHHHHHHHHcCCchHHHHHHHHhccCCCCCCce
Confidence            55 999999999999999999999999999999999999999999999999999999999999999999998764 4589


Q ss_pred             eEEEEEEEecCCcEEEEEEecCChhhHHHHHHHHHhhcCcccCCCccceecceeeEEEEeeCCCCCHHHHHHHHHHCCCc
Q 021961          155 IEKVYEVYGYGGVSIVVEVLTDKITRSVAAVREVVKDCGGKMADPGSVMFKFRRARVVNIKFTDADKDQLLDIALDAGAE  234 (305)
Q Consensus       155 ~e~~YE~~GPgGvaiIVE~lTDN~nRt~s~ir~i~~K~gG~l~~~gsv~f~F~~kGvi~v~~~~~d~D~l~e~AIEaGAE  234 (305)
                      +|++|||||||||+|||||||||+|||+++||++|+|+||+||++|||.|+|+|+|+|.+...  ++|+++|.|||+||+
T Consensus        81 ~e~~yEg~gp~gvaiiVe~lTDN~nRt~~~vR~~f~K~gG~lg~~GsV~~~F~~kG~i~~~~~--~~d~l~e~aie~gAe  158 (244)
T d1kona_          81 ETIIYEGYGPGGTAIMIECLSDNRNRTVAEVRHAFSKCGGNLGTDGSVAYLFSKKGVISFEKG--DEDTIMEAALEAGAE  158 (244)
T ss_dssp             EEEEEEEEETTTEEEEEEEEESCHHHHHHHHHHHHHTTTCEECCTTSSGGGEEEEEEEEESSS--CHHHHHHHHHHHTCS
T ss_pred             EEEEEEEEcCCccEEEEEEecCcHHHHHHHHHHHHHHcCCeeCCCccHhhhhheeceeccCCC--CHHHHHHHHHHhccc
Confidence            999999999999999999999999999999999999999999999999999999999999754  799999999999999


Q ss_pred             cccCCCCCCCCCcccccCceEEEEeCcccHHHHHHHHHHCCCCeeecccceeecCCCcc-chh
Q 021961          235 DVIEPPVNEDDTDEDRAERYYKVVSTSDNYTDITTKLREAGIPFETDNGSELLPITTIE-DIH  296 (305)
Q Consensus       235 DVee~~~~Ed~~~ed~~~~~~~i~~~p~d~~~V~~~L~~~G~~i~~s~ele~iP~~~Ve-~~~  296 (305)
                      ||++.    |       ++.|+|+|+|++|..|++.|++.||.+.++ +++|+|+++|+ +++
T Consensus       159 Dv~~~----d-------~~~~~i~~~~~dl~~v~~~Le~~g~~~~~a-ei~~~P~~~v~l~~e  209 (244)
T d1kona_         159 DVVTY----D-------DGAIDVYTAWEEMGKVRDALEAAGLKADSA-EVSMIPSTKADMDAE  209 (244)
T ss_dssp             EEEEC----T-------TSCEEEEEEGGGHHHHHHHHHHTTCCCSEE-EEEEEESSCCCCCTT
T ss_pred             hhccc----C-------CCceEEEecchhHHHHHHHHHhcCCCceee-eEEEEeCCccccCHH
Confidence            99763    1       246999999999999999999999999986 89999999999 444

>d1lfpa_ e.39.1.1 (A:) Hypothetical protein aq1575 {Aquifex aeolicus [TaxId: 63363]}

class: Multi-domain proteins (alpha and beta)
fold: YebC-like
superfamily: YebC-like
family: YebC-like
domain: Hypothetical protein aq1575
species: Aquifex aeolicus [TaxId: 63363]

Probab=100.00  E-value=6.5e-73  Score=517.82  Aligned_cols=203  Identities=31%  Similarity=0.553  Sum_probs=194.5

Q ss_pred             chhHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHhhccC-CccceeE
Q 021961           78 RRSSKIAGRKGAQDAKKAKLYSRMGKEVISAVKKGGPNPTSNTVLAAVLEKAKELDVPKDIVERNIKRASEK-GQEAFIE  156 (305)
Q Consensus        78 ~KwsnIkh~K~a~DakKsklfsKl~keI~vAvk~GG~DP~~N~~La~aI~~AK~~nmPKd~IErAIkra~g~-~~~~~~e  156 (305)
                      +||+||||+|+++|++|+|+|+||+|+|++|||+|||||+.|++||++|++||+.||||++||||||||+|. ...+|++
T Consensus         1 SkW~nIkh~K~~~D~~r~k~f~k~~r~I~~A~k~GG~DP~~N~~L~~ai~~Ak~~nmPk~~Ie~AIkk~~g~~~~~~~~~   80 (243)
T d1lfpa_           1 SHWAQIKHKKAKVDAQRGKLFSKLIREIIVATRLGGPNPEFNPRLRTAIEQAKKANMPWENIERAIKKGAGELEGEQFEE   80 (243)
T ss_dssp             CCSCCSSSSSSCTTTSHHHHHHHHHHHHHHHHHHHCSCGGGCHHHHHHHHHHHHTTCCHHHHHHHHHHHHSCSSSCCCEE
T ss_pred             CCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCccCHHHHHHHHHHHHcCCcHHHHHHHHHhcccccccccceE
Confidence            589999999999999999999999999999999999999999999999999999999999999999999985 4568999


Q ss_pred             EEEEEEecCCcEEEEEEecCChhhHHHHHHHHHhhcCcccCCCccceecceeeEEEEeeCCCCCHHHHHHHHHHCCCccc
Q 021961          157 KVYEVYGYGGVSIVVEVLTDKITRSVAAVREVVKDCGGKMADPGSVMFKFRRARVVNIKFTDADKDQLLDIALDAGAEDV  236 (305)
Q Consensus       157 ~~YE~~GPgGvaiIVE~lTDN~nRt~s~ir~i~~K~gG~l~~~gsv~f~F~~kGvi~v~~~~~d~D~l~e~AIEaGAEDV  236 (305)
                      ++|||||||||+|||||||||+|||+++||++|+|+||+||++|||.|+|+|+|+|.++....++|.+++.+||+||||+
T Consensus        81 ~~yEg~gP~GvaiiVe~lTDN~nRt~~~vr~~f~K~gG~l~~~GsV~~~F~~kG~i~~~~~~~~ed~l~~~~ie~gaed~  160 (243)
T d1lfpa_          81 VIYEGYAPGGVAVMVLATTDNRNRTTSEVRHVFTKHGGNLGASGCVSYLFERKGYIEVPAKEVSEEELLEKAIEVGAEDV  160 (243)
T ss_dssp             EEEEEEETTTEEEEEEEEESCHHHHHHHHHHHHHHTTCEECCTTSSGGGEEEEEEEEEEGGGSCHHHHHHHHHHHTCSEE
T ss_pred             EEEEEEecCCcEEEEEEeccchhhhHHHHHHHHHhcCCccccccceeeeecccceeccccCccchHHHHHHHhhhccccc
Confidence            99999999999999999999999999999999999999999999999999999999998878899999999999999999


Q ss_pred             cCCCCCCCCCcccccCceEEEEeCcccHHHHHHHHHHCCCCeeecccceeecCCCcc
Q 021961          237 IEPPVNEDDTDEDRAERYYKVVSTSDNYTDITTKLREAGIPFETDNGSELLPITTIE  293 (305)
Q Consensus       237 ee~~~~Ed~~~ed~~~~~~~i~~~p~d~~~V~~~L~~~G~~i~~s~ele~iP~~~Ve  293 (305)
                      ++.            ++.|+|+|+|++|.+|++.|++.||++.++ +++|+|+++|+
T Consensus       161 e~~------------~~~~~i~~~~~~l~~v~~~Le~~g~~i~~s-ei~~~P~~~v~  204 (243)
T d1lfpa_         161 QPG------------EEVHIIYTVPEELYEVKENLEKLGVPIEKA-QITWKPISTVQ  204 (243)
T ss_dssp             ECC------------SSEEEEEECGGGHHHHHHHHHTTTCCCSEE-EEEEEESSCEE
T ss_pred             ccc------------ccccceeccHHHHHHHHHHHHhcCCChhhc-ceeEecCCcee
Confidence            752            246999999999999999999999999886 89999999999

>d1mw7a_ e.39.1.1 (A:) Hypothetical protein HP0162 {Helicobacter pylori [TaxId: 210]}

class: Multi-domain proteins (alpha and beta)
fold: YebC-like
superfamily: YebC-like
family: YebC-like
domain: Hypothetical protein HP0162
species: Helicobacter pylori [TaxId: 210]

Probab=100.00  E-value=4.4e-63  Score=447.18  Aligned_cols=188  Identities=27%  Similarity=0.392  Sum_probs=174.1

Q ss_pred             HHHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHhhccCCccceeEEEEEEEecCCcEEEEEEec
Q 021961           96 KLYSRMGKEVISAVKKGGPNPTSNTVLAAVLEKAKELDVPKDIVERNIKRASEKGQEAFIEKVYEVYGYGGVSIVVEVLT  175 (305)
Q Consensus        96 klfsKl~keI~vAvk~GG~DP~~N~~La~aI~~AK~~nmPKd~IErAIkra~g~~~~~~~e~~YE~~GPgGvaiIVE~lT  175 (305)
                      |+|+||+|+|++|||+|||||+.|++||++|++||++||||++||||||||++++ .+|+|++|||||||||+|||||||
T Consensus         1 k~f~kl~reI~vAak~GG~Dp~~N~~L~~ai~~Ak~~nmPkd~IerAIkk~~~~~-~~~~e~~YEg~gp~gvaiiVe~lT   79 (220)
T d1mw7a_           1 KVFPKLAKAITLAAKDGGSEPDTNAKLRTAILNAKAQNMPKDNIDAAIKRASSKE-GNLSEITYEGKANFGVLIIMECMT   79 (220)
T ss_dssp             CCHHHHHHHHHHHHHTTCSCGGGCHHHHHHHHHHHHHTCCHHHHHHHHHHTTSTT-CCCEEEEEEEEETTTEEEEEEEEE
T ss_pred             ChhHHHHHHHHHHHHcCCCCcccCHHHHHHHHHHHHhCCCccHHHHHHHhhcccC-CCceEEEEEEecCCceEEEEEEec
Confidence            6899999999999999999999999999999999999999999999999998764 579999999999999999999999


Q ss_pred             CChhhHHHHHHHHHhhc-CcccCCCccceecceeeEEEEeeCC-----CCCHHHHHHHHHHCCCccccCCCCCCCCCccc
Q 021961          176 DKITRSVAAVREVVKDC-GGKMADPGSVMFKFRRARVVNIKFT-----DADKDQLLDIALDAGAEDVIEPPVNEDDTDED  249 (305)
Q Consensus       176 DN~nRt~s~ir~i~~K~-gG~l~~~gsv~f~F~~kGvi~v~~~-----~~d~D~l~e~AIEaGAEDVee~~~~Ed~~~ed  249 (305)
                      ||+|||+++||++|+|+ ||+||++|||.|+|+|+|+|.+.+.     ..++|++++.|||+|||||++.          
T Consensus        80 DN~nRt~~~vr~~f~K~~Gg~lg~~GsV~~~F~~kG~i~~~~~~~~~~~~~~d~~~~~aie~GaeDve~~----------  149 (220)
T d1mw7a_          80 DNPTRTIANLKSYFNKTQGASIVPNGSLEFMFNRKSVFECLKNEVENLKLSLEDLEFALIDYGLEELEEV----------  149 (220)
T ss_dssp             SCHHHHHHHHHHHHTTSTTCEEECTTTTTTSEEEEEEEEEEHHHHHHTTCCHHHHHHHHGGGTEEEEEEE----------
T ss_pred             CchhhHHHHHHHHHhhcccccccCCCcchhhheeeeeeeecCCccchhhcchhhhhHHhhhccccccccc----------
Confidence            99999999999999997 7899999999999999999998653     3578999999999999999752          


Q ss_pred             ccCceEEEEeCcccHHHHHHHHHHCCCCeeecccceeecCCCcc-chhh
Q 021961          250 RAERYYKVVSTSDNYTDITTKLREAGIPFETDNGSELLPITTIE-DIHQ  297 (305)
Q Consensus       250 ~~~~~~~i~~~p~d~~~V~~~L~~~G~~i~~s~ele~iP~~~Ve-~~~~  297 (305)
                        +..|+|+|+|++|..|+++|++.|+.+..+ +++|+|+++|+ ++++
T Consensus       150 --ed~~~i~t~~~~~~~v~~aL~~~~~~~~~a-ei~~~p~~~v~l~~e~  195 (220)
T d1mw7a_         150 --EDKIIIRGDYNSFKLLNEGFESLKLPILKA-SLQRIATTPIELNDEQ  195 (220)
T ss_dssp             --TTEEEEEEEGGGHHHHHHHHHHTTCCCSEE-EEEEEESSCBCCCHHH
T ss_pred             --CCcceeecchhhhhhhhHHHHhhcccccee-eEEEecCCceecCHHH
Confidence              136999999999999999999999999886 99999999999 5444