Citrus Sinensis ID: 022002


Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300----
MASLAQAPSAMSTVGVLWTLPRSMRLVNFKSVIPVVTSPCTHVKHSPLCCTKLTPWEPSPASHAPTDDADYKILNKNSNIFETLSSDNTAEAPATKTEEVTDANNQPLVQLQFLKWPMWLLGPCILLGTDCIFNIGATLFLLMADSCARSKNTTRACNSKPPFSYKFWNMVANTTGFIIPLLMLFGSQKGFLQPQLPFIPFAVLLGPYLLLLSIQILTEMLTWHWQSPVWLVTPVVYESYRVLQLMRGLKLGAELSAPAWIVHTVRGLVCWWILILGVQLMRVAWFAGFTSQARRQQSPASADG
cccccccccccccHHHHHHccccccccccccccccccccccccccccEEccccccccccccccccccccccccccccccEEEEccccccccccccccccHHcccccccHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHcccccEEEEcEEHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccc
cccHcccccHHHHEEHHHHcccccEEcccccccccEEcccEEEccEEEEEccccccccccccccccccccccEccccccEEEEccccccccccccccccEEEcccccccEEEEEcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccc
maslaqapsamSTVGVlwtlprsmrlvnfksvipvvtspcthvkhsplcctkltpwepspashaptddadykiLNKNSNIfetlssdntaeapatkteevtdannqplvqlqflkwpmwllgpcillgtdciFNIGATLFLLMADScarsknttracnskppfsyKFWNMVANTTGFIIPLLMlfgsqkgflqpqlpfipFAVLLGPYLLLLSIQILTEMLTwhwqspvwlvtpVVYESYRVLQLMRGLKLgaelsapaWIVHTVRGLVCWWILILGVQLMRVAWFAgftsqarrqqspasadg
maslaqapsamstvGVLWTLPRSMRLVNFKSVIPVVTSPCTHVKHSPLCCTKLTPWEPSPASHAPTDDADYKILNKNSNIFETLSSDNTAEAPATKteevtdannqPLVQLQFLKWPMWLLGPCILLGTDCIFNIGATLFLLMADSCARSKNTTRACNSKPPFSYKFWNMVANTTGFIIPLLMLFGSQKGFLQPQLPFIPFAVLLGPYLLLLSIQILTEMLTWHWQSPVWLVTPVVYESYRVLQLMRGLKLGAELSAPAWIVHTVRGLVCWWILILGVQLMRVAWFAGFTSqarrqqspasadg
MASLAQAPSAMSTVGVLWTLPRSMRLVNFKSVIPVVTSPCTHVKHSPLCCTKLTPWEPSPASHAPTDDADYKILNKNSNIFETLSSDNTAEAPATKTEEVTDANNQPLVQLQFLKWPMWLLGPCILLGTDCIFNIGATLFLLMADSCARSKNTTRACNSKPPFSYKFWNMVANTTGFIIPLLMLFGSQKGFLQPQLPFIPFAVLLGPYLLLLSIQILTEMLTWHWQSPVWLVTPVVYESYRVLQLMRGLKLGAELSAPAWIVHTVRGLVCWWILILGVQLMRVAWFAGFTSQARRQQSPASADG
************TVGVLWTLPRSMRLVNFKSVIPVVTSPCTHVKHSPLCCTKLTPW**************************************************PLVQLQFLKWPMWLLGPCILLGTDCIFNIGATLFLLMADSCARSKNTTRACNSKPPFSYKFWNMVANTTGFIIPLLMLFGSQKGFLQPQLPFIPFAVLLGPYLLLLSIQILTEMLTWHWQSPVWLVTPVVYESYRVLQLMRGLKLGAELSAPAWIVHTVRGLVCWWILILGVQLMRVAWFAGFT**************
********SAM*TVGVLWTL**************VVTSPCTHVKHSPLCCTKLTPWEPSPASHAPTDDADYKILNKNSNIFETL*********************QPLVQLQFLKWPMWLLGPCILLGTDCIFNIGATLFLLMADSCA*************PFSYKFWNMVANTTGFIIPLLMLFGSQKGFLQPQLPFIPFAVLLGPYLLLLSIQILTEMLTWHWQSPVWLVTPVVYESYRVLQLMRGLKLGAELSAPAWIVHTVRGLVCWWILILGVQLMRVAWFAGFTS*************
***********STVGVLWTLPRSMRLVNFKSVIPVVTSPCTHVKHSPLCCTKLTPWE********TDDADYKILNKNSNIFETLSSDNTAEAPATKTEEVTDANNQPLVQLQFLKWPMWLLGPCILLGTDCIFNIGATLFLLMADSCARSKNTTRACNSKPPFSYKFWNMVANTTGFIIPLLMLFGSQKGFLQPQLPFIPFAVLLGPYLLLLSIQILTEMLTWHWQSPVWLVTPVVYESYRVLQLMRGLKLGAELSAPAWIVHTVRGLVCWWILILGVQLMRVAWFAGFT**************
****AQAPSAMSTVGVLWTLPRSMRLVNFKSVIPVVTSPCTHVKHSPLCCTKLTPWEPSPASHAPTDDADYKILNKNSNIFETLSSDNTAEAPATKTEEVTDANNQPLVQLQFLKWPMWLLGPCILLGTDCIFNIGATLFLLMADSCARSKNTTRACNSKPPFSYKFWNMVANTTGFIIPLLMLFGSQKGFLQPQLPFIPFAVLLGPYLLLLSIQILTEMLTWHWQSPVWLVTPVVYESYRVLQLMRGLKLGAELSAPAWIVHTVRGLVCWWILILGVQLMRVAWFAGFTSQ************
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooo
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooo
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiii
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiHHHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiii
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiii
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MASLAQAPSAMSTVGVLWTLPRSMRLVNFKSVIPVVTSPCTHVKHSPLCCTKLTPWEPSPASHAPTDDADYKILNKNSNIFETLSSDNTAEAPATKTEEVTDANNQPLVQLQFLKWPMWLLGPCILLGTDCIFNIGATLFLLMADSCARSKNTTRACNSKPPFSYKFWNMVANTTGFIIPLLMLFGSQKGFLQPQLPFIPFAVLLGPYLLLLSIQILTEMLTWHWQSPVWLVTPVVYESYRVLQLMRGLKLGAELSAPAWIVHTVRGLVCWWILILGVQLMRVAWFAGFTSQARRQQSPASADG
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

No hits with e-value below 0.001 by BLAST

Close Homologs in the Non-Redundant Database Detected by BLAST ?

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query304
118489441332 unknown [Populus trichocarpa x Populus d 1.0 0.915 0.626 1e-117
296089209 433 unnamed protein product [Vitis vinifera] 1.0 0.702 0.638 1e-117
359489458332 PREDICTED: uncharacterized protein LOC10 1.0 0.915 0.638 1e-116
356496330343 PREDICTED: uncharacterized protein LOC10 1.0 0.886 0.590 1e-101
255541184342 conserved hypothetical protein [Ricinus 0.986 0.877 0.603 1e-100
449469343344 PREDICTED: uncharacterized protein LOC10 0.845 0.747 0.569 6e-94
357469915344 hypothetical protein MTR_4g027070 [Medic 0.865 0.764 0.599 7e-93
42572745404 uncharacterized protein [Arabidopsis tha 0.822 0.618 0.541 2e-84
42570499329 uncharacterized protein [Arabidopsis tha 0.819 0.756 0.543 8e-84
30695235236 uncharacterized protein [Arabidopsis tha 0.634 0.817 0.602 2e-72
>gi|118489441|gb|ABK96523.1| unknown [Populus trichocarpa x Populus deltoides] Back     alignment and taxonomy information
 Score =  426 bits (1094), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 208/332 (62%), Positives = 249/332 (75%), Gaps = 28/332 (8%)

Query: 1   MASLAQAPSAMSTVGVLWTLPRSMRLVNFKSVIPVVTSPCTHVKHSPLCCTKLTPWEPSP 60
           MASL +AP  MST+       R ++L++  ++   +  P  HV H+ +CC KLTPWEPSP
Sbjct: 1   MASLVKAPPTMSTINAHQVHLRKLKLLSNLNMHHGLRFPRIHVNHTTVCCAKLTPWEPSP 60

Query: 61  ASHAPTDDADYKILNKNSNIFETLSSDNTAEAPATKTEEVTDANNQPLVQLQFLKWPMWL 120
            ++APT DA   +L K SNIFETL S++TAEAPAT +EE+TD  N+ LVQ QFLKWPMWL
Sbjct: 61  VTYAPTIDASGNLLKKTSNIFETLKSEDTAEAPATNSEELTDTKNRSLVQFQFLKWPMWL 120

Query: 121 LGPCILL----------------------------GTDCIFNIGATLFLLMADSCARSKN 152
           LGP +LL                            G DCIFN+GATLFLLMADSC+RSKN
Sbjct: 121 LGPSLLLTTGMVPTLWLPLSSVFLGPNIASLLSLIGLDCIFNLGATLFLLMADSCSRSKN 180

Query: 153 TTRACNSKPPFSYKFWNMVANTTGFIIPLLMLFGSQKGFLQPQLPFIPFAVLLGPYLLLL 212
             + CNSKPP SYKFWN+VA  +GF+IPL+ L GSQKG L PQLPFIPFAVLLGPY+LLL
Sbjct: 181 QAQTCNSKPPLSYKFWNVVATVSGFVIPLMALLGSQKGTLLPQLPFIPFAVLLGPYMLLL 240

Query: 213 SIQILTEMLTWHWQSPVWLVTPVVYESYRVLQLMRGLKLGAELSAPAWIVHTVRGLVCWW 272
           S+QILTE+LTWHWQSPVWLVTPVVYESYR+LQLMRGLKLGAELSAP W++H +RGLV WW
Sbjct: 241 SVQILTELLTWHWQSPVWLVTPVVYESYRLLQLMRGLKLGAELSAPTWMLHMIRGLVSWW 300

Query: 273 ILILGVQLMRVAWFAGFTSQARRQQSPASADG 304
           ILILGVQLM VAWFAGF +++++Q SPA++ G
Sbjct: 301 ILILGVQLMSVAWFAGFAARSQQQHSPAASGG 332




Source: Populus trichocarpa x Populus deltoides

Species: Populus trichocarpa x Populus deltoides

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|296089209|emb|CBI38912.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|359489458|ref|XP_003633924.1| PREDICTED: uncharacterized protein LOC100854105 [Vitis vinifera] Back     alignment and taxonomy information
>gi|356496330|ref|XP_003517021.1| PREDICTED: uncharacterized protein LOC100779126 [Glycine max] Back     alignment and taxonomy information
>gi|255541184|ref|XP_002511656.1| conserved hypothetical protein [Ricinus communis] gi|223548836|gb|EEF50325.1| conserved hypothetical protein [Ricinus communis] Back     alignment and taxonomy information
>gi|449469343|ref|XP_004152380.1| PREDICTED: uncharacterized protein LOC101219687 [Cucumis sativus] gi|449528182|ref|XP_004171085.1| PREDICTED: uncharacterized LOC101219687 [Cucumis sativus] Back     alignment and taxonomy information
>gi|357469915|ref|XP_003605242.1| hypothetical protein MTR_4g027070 [Medicago truncatula] gi|355506297|gb|AES87439.1| hypothetical protein MTR_4g027070 [Medicago truncatula] Back     alignment and taxonomy information
>gi|42572745|ref|NP_974468.1| uncharacterized protein [Arabidopsis thaliana] gi|332646561|gb|AEE80082.1| uncharacterized protein [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|42570499|ref|NP_850729.2| uncharacterized protein [Arabidopsis thaliana] gi|7288007|emb|CAB81845.1| putative protein [Arabidopsis thaliana] gi|332646563|gb|AEE80084.1| uncharacterized protein [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|30695235|ref|NP_191618.2| uncharacterized protein [Arabidopsis thaliana] gi|186511244|ref|NP_001118866.1| uncharacterized protein [Arabidopsis thaliana] gi|332646562|gb|AEE80083.1| uncharacterized protein [Arabidopsis thaliana] gi|332646564|gb|AEE80085.1| uncharacterized protein [Arabidopsis thaliana] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query304
TAIR|locus:2103326404 AT3G60590 [Arabidopsis thalian 0.578 0.435 0.687 8.2e-85
TAIR|locus:2103326 AT3G60590 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 695 (249.7 bits), Expect = 8.2e-85, Sum P(2) = 8.2e-85
 Identities = 123/179 (68%), Positives = 150/179 (83%)

Query:   126 LLGTDCIFNIGATLFLLMADSCARSKNTTRACNSKPPFSYKFWNMVANTTGFIIPLLMLF 185
             L+G DCIFN+GATLFLLMADSCAR K+ +++CNSKPPFSYKFWNM +   GF++P+L+LF
Sbjct:   222 LIGLDCIFNLGATLFLLMADSCARPKDPSQSCNSKPPFSYKFWNMFSLIIGFLVPMLLLF 281

Query:   186 GSQKGFL---QPQLPFIPFAVLLGPYLLLLSIQILTEMLTWHWQSPVWLVTPVVYESYRV 242
             GSQ G L   QPQ+PF+  AV+L PY +LL++Q LTE+LTWHWQSPVWLVTPVVYE+YR+
Sbjct:   282 GSQSGLLASLQPQIPFLSSAVILFPYFILLAVQTLTEILTWHWQSPVWLVTPVVYEAYRI 341

Query:   243 LQLMRGLKLGAELSAPAWIVHTVRGLVCWWILILGVQLMRVAWFAGFTSQARRQQSPAS 301
             LQLMRGL L AE++AP W+VH +RGLV WW+LILG+QLMRVAWFAGF S+    Q P S
Sbjct:   342 LQLMRGLTLSAEVNAPVWVVHMLRGLVSWWVLILGMQLMRVAWFAGFASRTTTGQQPQS 400


GO:0005739 "mitochondrion" evidence=ISM
GO:0009706 "chloroplast inner membrane" evidence=IDA
GO:0009941 "chloroplast envelope" evidence=IDA
GO:0009507 "chloroplast" evidence=IDA
GO:0009536 "plastid" evidence=IDA

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!


Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Fail to connect to STRING server


Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Conserved Domains Detected by HHsearch ?

No hit with probability above 80.00


Homologous Structure Templates

Structure Templates Detected by BLAST ?

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST ?

No hit with e-value below 0.005

Structure Templates Detected by HHsearch ?

No hit with probability above 80.00


Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch ?

No hit with probability above 80.00