Citrus Sinensis ID: 022016

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300----
Protein Sequence
MSSLRDYKPAMAMLALQFSYAVVALSTRAALLQGMNPRVFVVYRQAIATLFMAPMAYLSSRKYKSSSMGLRSFSLIFFIALLGVTINQNTYFEGLYLASSSMASAMGNLIPAITFVMASIVGLEKIDLGSVRSVAKILGTIFCVGGAISMALLRGPKLLNTEFLPEKSFLFRSSGGENWLLGCLFLFASACCWSLWLILQVPVSASYPDHLSLSAWMCFLATLQSATFAIFTEPDPEAWNLHSSLEIFCCFFSGAIGSGVSFCVQAWCISKRGPLFSAMFNPLCTVIVTILAALLLHEEIYTGR
Secondary Structure (PSIPRED)
ccccccHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHccccccccccccHHHHHHHHHHHHHHHHHHHHcccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHccccEEEEccccHHHHHHHHHHHHHHcccccccc
Secondary Structure Prediction (SSPRO)
cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccHHHEHHHHHHHHHHHHHHHHccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHccccHEEEcccHHHHHHHHHHHHHHHHHHHHHHHHHHccccEEEHcHHHHHHHHHHHHHHHHHHHHHcccc
Coil and Loop (DISEMBL)
MSSLRDYKPAMAMLALQFSYAVVALSTRAALLQGMNPRVFVVYRQAIATLFMAPMAYLSSrkyksssmglrsFSLIFFIALLGVTINQNTYFEGLYLASSSMASAMGNLIPAITFVMASIVGLekidlgsvRSVAKILGTIFCVGGAISMallrgpkllnteflpeksflfrssggenwLLGCLFLFASACCWSLWLILqvpvsasypdhlsLSAWMCFLATLQSATFaiftepdpeawnlhsSLEIFCCFfsgaigsgVSFCVQAWCiskrgplfsamfnpLCTVIVTILAALLLHEEIYTGR
Flexible Loop (DISEMBL)
MSSLRDYKPAMAMLALQFSYAVVALSTRAALLQGMNPRVFVVYRQAIATLFMAPMAYLSSRKYKSSSMGLRSFSLIFFIALLGVTINQNTYFEGLYLASSSMASAMGNLIPAITFVMASIVGLEKIDLGSVRSVAKILGTIFCVGGAISMALLRGPKLLNTEFLPEKSFLFRSSGGENWLLGCLFLFASACCWSLWLILQVPVSASYPDHLSLSAWMCFLATLQSATFAIFTEPDPEAWNLHSSLEIFCCFFSGAIGSGVSFCVQAWCISKRGPLFSAMFNPLCTVIVTILAALLLheeiytgr
Low Complexity Region (SEG)
MSSLRDYKPAMAMLALQFSYAVVALSTRAALLQGMNPRVFVVYRQAIATLFMAPMAYLSSRKYKSSSMGLRSFSLIFFIALLGVTINQNTYFEGLYLasssmasamGNLIPAITFVMASIVGLEKIDLGSVRSVAKILGTIFCVGGAISMALLRGPKLLNTEFLPEKSFLFRSSGGENWLLGCLFLFASACCWSLWLILQVPVSASYPDHLSLSAWMCFLATLQSATFAIFTEPDPEAWNLHSSLEIFCCFFSGAIGSGVSFCVQAWCISKRGPLFSAMFNPLCTVIVTILAALLLHEEIYTGR
Disordered region (IsUnstruct)
*********AMAMLALQFSYAVVALSTRAALLQGMNPRVFVVYRQAIATLFMAPMAYLSSRKYKSSSMGLRSFSLIFFIALLGVTINQNTYFEGLYLASSSMASAMGNLIPAITFVMASIVGLEKIDLGSVRSVAKILGTIFCVGGAISMALLRGPKLLNTEFLPEKSFLFRSSGGENWLLGCLFLFASACCWSLWLILQVPVSASYPDHLSLSAWMCFLATLQSATFAIFTEPDPEAWNLHSSLEIFCCFFSGAIGSGVSFCVQAWCISKRGPLFSAMFNPLCTVIVTILAALLLHEEIY***
Disordered Region (DISOPRED)
*****DYKPAMAMLALQFSYAVVALSTRAALLQGMNPRVFVVYRQAIATLFMAPMAYLSSRKYKSSSMGLRSFSLIFFIALLGVTINQNTYFEGLYLASSSMASAMGNLIPAITFVMASIVGLEKIDLGSVRSVAKILGTIFCVGGAISMALLRGPKLLN******************WLLGCLFLFASACCWSLWLILQVPVSASYPDHLSLSAWMCFLATLQSATFAIFTEPDPEAWNLHSSLEIFCCFFSGAIGSGVSFCVQAWCISKRGPLFSAMFNPLCTVIVTILAALLLHEEIYTG*
Disordered Region (DISEMBL)
MSSLRDYKPAMAMLALQFSYAVVALSTRAALLQGMNPRVFVVYRQAIATLFMAPMAYLSSRKYKSSSMGLRSFSLIFFIALLGVTINQNTYFEGLYLASSSMASAMGNLIPAITFVMASIVGLEKIDLGSVRSVAKILGTIFCVGGAISMALLRGPKLLNTEFLPEKSFLFRSSGGENWLLGCLFLFASACCWSLWLILQVPVSASYPDHLSLSAWMCFLATLQSATFAIFTEPDPEAWNLHSSLEIFCCFFSGAIGSGVSFCVQAWCISKRGPLFSAMFNPLCTVIVTILAALLLHEEIYTGR
Disordered Region (DISPRO)
*SSLRDYKPAMAMLALQFSYAVVALSTRAALLQGMNPRVFVVYRQAIATLFMAPMAYLSSRKYKSSSMGLRSFSLIFFIALLGVTINQNTYFEGLYLASSSMASAMGNLIPAITFVMASIVGLEKIDLGSVRSVAKILGTIFCVGGAISMALLRGPKLLNTE**************ENWLLGCLFLFASACCWSLWLILQVPVSASYPDHLSLSAWMCFLATLQSATFAIFTEPDPEAWNLHSSLEIFCCFFSGAIGSGVSFCVQAWCISKRGPLFSAMFNPLCTVIVTILAALLLHEEIYTGR
Transmembrane Helix (TMHMM)
oooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHoooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiii
Transmembrane Helix (HMMTOP)
iiiiiiiiHHHHHHHHHHHHHHHHHHooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiHHHHHHHHHHHHHHHHHHHoooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiHHHHHHHHHHHHHHHHHHHHHoooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHHHHHooooHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiHHHHHHHHHHHHHHHHHHHHHHHHHHHooooo
TM Helix, Signal Peptide (Phobius)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSoooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHoooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHHHoooooooo
Signal Peptide (SignalP HMM Mode)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MSSLRDYKPAMAMLALQFSYAVVALSTRAALLQGMNPRVFVVYRQAIATLFMAPMAYLSSRKYKSSSMGLRSFSLIFFIALLGVTINQNTYFEGLYLASSSMASAMGNLIPAITFVMASIVGLEKIDLGSVRSVAKILGTIFCVGGAISMALLRGPKLLNTEFLPEKSFLFRSSGGENWLLGCLFLFASACCWSLWLILQVPVSASYPDHLSLSAWMCFLATLQSATFAIFTEPDPEAWNLHSSLEIFCCFFSGAIGSGVSFCVQAWCISKRGPLFSAMFNPLCTVIVTILAALLLHEEIYTGR
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	304	2.2.26 [Sep-21-2011]
Q9M0B8	373	WAT1-related protein At4g	yes	no	0.963	0.785	0.612	1e-99
Q9SUD5	359	WAT1-related protein At4g	no	no	0.957	0.810	0.498	2e-76
Q94AP3	389	Protein WALLS ARE THIN 1	no	no	0.960	0.750	0.400	5e-59
O80638	374	WAT1-related protein At2g	no	no	0.980	0.796	0.383	2e-53
Q6J163	410	Auxin-induced protein 5NG	N/A	no	0.957	0.709	0.378	6e-53
Q9LV20	383	WAT1-related protein At3g	no	no	0.970	0.770	0.378	1e-52
F4IJ08	394	WAT1-related protein At2g	no	no	0.960	0.741	0.368	2e-49
F4HZQ7	389	WAT1-related protein At1g	no	no	0.983	0.768	0.363	2e-48
Q9LPF1	370	WAT1-related protein At1g	no	no	0.983	0.808	0.348	5e-47
F4J9A3	369	WAT1-related protein At3g	no	no	0.957	0.788	0.339	8e-47

>sp|Q9M0B8|WTR37_ARATH WAT1-related protein At4g30420 OS=Arabidopsis thaliana GN=At4g30420 PE=3 SV=1

 Score =  363 bits (931), Expect = 1e-99,   Method: Compositional matrix adjust.
 Identities = 182/297 (61%), Positives = 219/297 (73%), Gaps = 4/297 (1%)

Query: 11  MAMLALQFSYAVVALSTRAALLQGMNPRVFVVYRQAIATLFMAPMAYLSSRKYKS--SSM 68
           MAM  +Q  YA V L  RA L+ G++PRVF++YRQA AT+F+ P  YLS RK K   SS+
Sbjct: 1   MAMTMIQLCYAGVTLFARATLVHGLSPRVFILYRQAFATIFIFPFLYLSRRKSKIAISSL 60

Query: 69  GLRSFSLIFFIALLGVTINQNTYFEGLYLASSSMASAMGNLIPAITFVMASIVGLEKIDL 128
            L+SFSLIF ++L+G+TINQN Y EGLYL SSSM SA+GN+IPAITF+++ + G EK++L
Sbjct: 61  DLKSFSLIFLVSLIGITINQNLYLEGLYLTSSSMGSAVGNIIPAITFLISFLAGYEKLNL 120

Query: 129 GSVRSVAKILGTIFCVGGAISMALLRGPKLLNTE-FLP-EKSFLFRSSGGENWLLGCLFL 186
             +R +AKI GTI CV GAISM LLRGPK+LN+E  LP  KS L        WL+GCLFL
Sbjct: 121 RDIRGLAKIAGTILCVAGAISMTLLRGPKILNSESALPIAKSVLGHLKDQNTWLIGCLFL 180

Query: 187 FASACCWSLWLILQVPVSASYPDHLSLSAWMCFLATLQSATFAIFTEPDPEAWNLHSSLE 246
           F+S  CWS WLILQVP+SA YPD+LSLSAWMC   T+Q A    F E DP AW LHS  E
Sbjct: 181 FSSTLCWSFWLILQVPISAYYPDNLSLSAWMCLFGTIQCAVVTFFLEKDPNAWILHSYSE 240

Query: 247 IFCCFFSGAIGSGVSFCVQAWCISKRGPLFSAMFNPLCTVIVTILAALLLHEEIYTG 303
              C ++G   S +SF VQAW I+KRGP+FSA+FNPLCTVIVTILAAL  HEEIYTG
Sbjct: 241 FATCLYAGIGASALSFTVQAWAIAKRGPVFSALFNPLCTVIVTILAALFFHEEIYTG 297

Arabidopsis thaliana (taxid: 3702)

>sp|Q9SUD5|WTR36_ARATH WAT1-related protein At4g28040 OS=Arabidopsis thaliana GN=At4g28040 PE=2 SV=1

 Score =  285 bits (730), Expect = 2e-76,   Method: Compositional matrix adjust.
 Identities = 151/303 (49%), Positives = 203/303 (66%), Gaps = 12/303 (3%)

Query: 3   SLRDYKPAMAMLALQFSYAVVALSTRAALLQGMNPRVFVVYRQAIATLFMAPMAYLSS-R 61
            +  YK  +A++ LQF+ A VAL T+AA ++G+NP VFVVYRQAIATLF+ P++++S+ R
Sbjct: 2   EISKYKAVLALVMLQFTSAGVALFTKAAFMEGLNPTVFVVYRQAIATLFICPISFISAWR 61

Query: 62  KYKSSSMGLRSFSLIFFIALLGVTINQNTYFEGLYLASSSMASAMGNLIPAITFVMASIV 121
           K    S+G+R F  +   A++GVT+NQN YF+G+ L+SSSMA AM NLIPA+TF+++ IV
Sbjct: 62  KENKPSLGVRGFWWVALTAVIGVTVNQNAYFKGIDLSSSSMACAMTNLIPAVTFIISIIV 121

Query: 122 GLEKIDLGSVRSVAKILGTIFCVGGAISMALLRGPKLLNTEFLPEKSFLFRSSGGENWLL 181
           G E I   S++SVAK++GT  CVGGA++M  LRGPKLLN            +     WLL
Sbjct: 122 GFESIKRRSMKSVAKVIGTGVCVGGAMAMTFLRGPKLLNA---------LLNQDNTAWLL 172

Query: 182 GCLFLFASACCWSLWLILQVPVSASYPDHLSLSAWMCFLATLQSATFAI-FTEPDPEAWN 240
           GC FL  S   WSLWLILQVP+++  PDHL  SA  CF+AT+ S   A+         W 
Sbjct: 173 GCFFLLISTFAWSLWLILQVPIASHCPDHLYTSACTCFIATIASFLVALALGNTHLPPWK 232

Query: 241 LHSSLEIFCCFFSGAIGSGVSFCVQAWCISKRGPLFSAMFNPLCTVIVTILAALLLHEEI 300
           L S L++ CC +SG     +SF +QAW +S++GP+FSA+FNPL  VIVT   AL L E+ 
Sbjct: 233 LDSFLKLSCCIYSG-FQLAISFFLQAWIVSQKGPVFSALFNPLSAVIVTFFGALYLKEQT 291

Query: 301 YTG 303
           Y G
Sbjct: 292 YLG 294

Arabidopsis thaliana (taxid: 3702)

>sp|Q94AP3|WAT1_ARATH Protein WALLS ARE THIN 1 OS=Arabidopsis thaliana GN=WAT1 PE=1 SV=1

 Score =  228 bits (580), Expect = 5e-59,   Method: Compositional matrix adjust.
 Identities = 121/302 (40%), Positives = 177/302 (58%), Gaps = 10/302 (3%)

Query: 11  MAMLALQFSYAVVALSTRAALLQGMNPRVFVVYRQAIATLFMAPMAYLSSRKYKSSSMGL 70
           +AML LQF YA   + +RAAL  G++  VF VYR  IA L + P AY   +K +  ++ L
Sbjct: 22  IAMLTLQFGYAGFHVVSRAALNMGISKLVFPVYRNIIALLLLLPFAYFLEKK-ERPAITL 80

Query: 71  RSFSLIFFIALLGVTINQNTYFEGLYLASSSMASAMGNLIPAITFVMASIVGLEKIDLGS 130
                 FF+AL+G+T NQ  Y  GL   S + AS+M N +PAITF+MA+++ +EK+ +  
Sbjct: 81  NFLIQFFFLALIGITANQGFYLLGLDNTSPTFASSMQNSVPAITFLMAALLRIEKVRINR 140

Query: 131 VRSVAKILGTIFCVGGAISMALLRGPKL------LNTEFLPEKSFLFRSSGG---ENWLL 181
              ++KILGT  CV GA  + L +GP +      L+   L   S +    G    +NW L
Sbjct: 141 RDGISKILGTALCVAGASVITLYKGPTIYTPASHLHAHLLTTNSAVLAPLGNAAPKNWTL 200

Query: 182 GCLFLFASACCWSLWLILQVPVSASYPDHLSLSAWMCFLATLQSATFAIFTEPDPEAWNL 241
           GC++L      WS WL+ Q PV  SYP  LS++++ CF   +Q    A F E D +AW  
Sbjct: 201 GCIYLIGHCLSWSGWLVFQAPVLKSYPARLSVTSYTCFFGIIQFLIIAAFCERDSQAWVF 260

Query: 242 HSSLEIFCCFFSGAIGSGVSFCVQAWCISKRGPLFSAMFNPLCTVIVTILAALLLHEEIY 301
           HS  E+F   ++G + SG++F VQ WCI + GP+F A++ P+ T++V I+A++ L EE Y
Sbjct: 261 HSGWELFTILYAGIVASGIAFAVQIWCIDRGGPVFVAVYQPVQTLVVAIMASIALGEEFY 320

Query: 302 TG 303
            G
Sbjct: 321 LG 322

Required for secondary wall formation in fibers, especially in short days conditions. Promotes indole metabolism and transport (e.g. tryptophan, neoglucobrassicin and auxin (indole-3-acetic acid)). May prevent salicylic-acid (SA) accumulation.

Arabidopsis thaliana (taxid: 3702)

>sp|O80638|WTR14_ARATH WAT1-related protein At2g39510 OS=Arabidopsis thaliana GN=At2g39510 PE=2 SV=1

 Score =  209 bits (531), Expect = 2e-53,   Method: Compositional matrix adjust.
 Identities = 118/308 (38%), Positives = 182/308 (59%), Gaps = 10/308 (3%)

Query: 3   SLRDYKPAMAMLALQFSYAVVALSTRAALLQGMNPRVFVVYRQAIATLFMAPMAYLSSRK 62
           +L+ +KP + +++LQF YA +++  + AL QGM+P V   YR  +AT+F+AP AY   RK
Sbjct: 2   ALKTWKPFITVVSLQFGYAGLSIIAKFALNQGMSPHVLASYRHIVATIFIAPFAYFLDRK 61

Query: 63  YKSSSMGLRSFSLIFFIALLGVTINQNTYFEGLYLASSSMASAMGNLIPAITFVMASIVG 122
            +   M L  F  I  + LL  TI+QN Y+ G+   S++  +AM N++PA  F+MA I  
Sbjct: 62  IRPK-MTLSIFFKILLLGLLEPTIDQNLYYTGMKYTSATFTAAMTNVLPAFAFIMAWIFR 120

Query: 123 LEKIDLGSVRSVAKILGTIFCVGGAISMALLRGPKL----LNTEFLPEKSFLFRSSGGEN 178
           LEK+++  + S AKILGTI  VGGA+ M +++GP +     N   + + S    ++G + 
Sbjct: 121 LEKVNVKKIHSQAKILGTIVTVGGAMLMTVVKGPLIPLPWANPHDIHQDS---SNTGVKQ 177

Query: 179 WLLGCLFLFASAC-CWSLWLILQVPVSASYPDHLSLSAWMCFLATLQSATFAIFTEP-DP 236
            L     L A  C CW+ ++ LQ     SYP  LSL+A++CFL +++S   A+F E  +P
Sbjct: 178 DLTKGASLIAIGCICWAGFINLQAITLKSYPVELSLTAYICFLGSIESTIVALFIERGNP 237

Query: 237 EAWNLHSSLEIFCCFFSGAIGSGVSFCVQAWCISKRGPLFSAMFNPLCTVIVTILAALLL 296
            AW +H   ++    + G I SG+ + VQ   +  RGP+F   FNPL  VIV IL +++L
Sbjct: 238 SAWAIHLDSKLLAAVYGGVICSGIGYYVQGVIMKTRGPVFVTAFNPLSMVIVAILGSIIL 297

Query: 297 HEEIYTGR 304
            E ++ GR
Sbjct: 298 AEVMFLGR 305

Arabidopsis thaliana (taxid: 3702)

>sp|Q6J163|5NG4_PINTA Auxin-induced protein 5NG4 OS=Pinus taeda PE=2 SV=1

 Score =  207 bits (528), Expect = 6e-53,   Method: Compositional matrix adjust.
 Identities = 114/301 (37%), Positives = 172/301 (57%), Gaps = 10/301 (3%)

Query: 12  AMLALQFSYAVVALSTRAALLQGMNPRVFVVYRQAIATLFMAPMAYLSSRKYKSSSMGLR 71
           AMLALQF YA   + +RAAL  G++  VF VYR  +A + + P AY   +K + + + L 
Sbjct: 22  AMLALQFGYAGFHIVSRAALNMGVSKVVFPVYRNILALMLIGPCAYFLEKKERPA-LTLS 80

Query: 72  SFSLIFFIALLGVTINQNTYFEGLYLASSSMASAMGNLIPAITFVMASIVGLEKIDLGSV 131
                F +AL G+T         + L   + ASA+ N +PAITF+MA+ + LEK+ +   
Sbjct: 81  FLIQFFLLALCGITGQSRILSLRIVLHIPTFASAIQNSVPAITFIMAAALRLEKVHISRR 140

Query: 132 RSVAKILGTIFCVGGAISMALLRGPKLL-----NTEFLPEKSFLFR----SSGGENWLLG 182
             +AKI+GT+ CV GA  + L +GP +      N E        F+    S+  ENW LG
Sbjct: 141 DGLAKIIGTVACVSGATIITLYKGPPITHIWRPNLEVTASYFKAFQGNDLSAKSENWTLG 200

Query: 183 CLFLFASACCWSLWLILQVPVSASYPDHLSLSAWMCFLATLQSATFAIFTEPDPEAWNLH 242
           C++L  +   WS W++LQ PV   YP  LS++++ CF   +Q    A F E D E W +H
Sbjct: 201 CIYLLGNCLAWSGWIVLQAPVLKRYPARLSVTSFTCFFGVIQFLIIAAFFETDLEHWKIH 260

Query: 243 SSLEIFCCFFSGAIGSGVSFCVQAWCISKRGPLFSAMFNPLCTVIVTILAALLLHEEIYT 302
           S  E+F   ++G + SG++F VQ WCI + GP+F A++ P+ T+ V I+A+++L E+ Y 
Sbjct: 261 SGGELFTILYAGFVASGIAFSVQIWCIDRGGPVFVAVYQPVQTIAVAIMASIILGEQFYL 320

Query: 303 G 303
           G
Sbjct: 321 G 321

Pinus taeda (taxid: 3352)

>sp|Q9LV20|WTR17_ARATH WAT1-related protein At3g18200 OS=Arabidopsis thaliana GN=At3g18200 PE=2 SV=1

 Score =  207 bits (526), Expect = 1e-52,   Method: Compositional matrix adjust.
 Identities = 112/296 (37%), Positives = 171/296 (57%), Gaps = 1/296 (0%)

Query: 8   KPAMAMLALQFSYAVVALSTRAALLQGMNPRVFVVYRQAIATLFMAPMAYLSSRKYKSSS 67
           K  +A++ LQF +A   + +R AL  G++  V+ VYR  +A L + P AY   +K +   
Sbjct: 34  KLVVALITLQFCFAGFHIVSRVALNIGVSKVVYPVYRNLLALLLIGPFAYFFEKK-ERPP 92

Query: 68  MGLRSFSLIFFIALLGVTINQNTYFEGLYLASSSMASAMGNLIPAITFVMASIVGLEKID 127
           + +   +  FF+AL+G+T NQ  Y  GLY A+ + ASAM N +PAITF+MA  + LE ID
Sbjct: 93  LTISLLAQFFFLALIGITANQGFYLLGLYYATPTFASAMQNSVPAITFIMACALRLEHID 152

Query: 128 LGSVRSVAKILGTIFCVGGAISMALLRGPKLLNTEFLPEKSFLFRSSGGENWLLGCLFLF 187
           L     VAK+LGT+  +GGA  + L RG  + +     +K  +  S    +  LG L+L 
Sbjct: 153 LVRKHGVAKVLGTLVSIGGATVITLYRGFPIFDQGLNMQKEEVVGSDNSHSLTLGWLYLM 212

Query: 188 ASACCWSLWLILQVPVSASYPDHLSLSAWMCFLATLQSATFAIFTEPDPEAWNLHSSLEI 247
                W+ W++LQ PV   YP  L+L+++ CF   +Q    A+F E D   W + S  E+
Sbjct: 213 GHCLSWAGWMVLQAPVLKQYPAKLTLTSFTCFFGLIQFLVIALFVETDLNNWIIVSWEEL 272

Query: 248 FCCFFSGAIGSGVSFCVQAWCISKRGPLFSAMFNPLCTVIVTILAALLLHEEIYTG 303
           F   ++G I SG+   +Q WCI K GP+F A+F PL T++V  +A L+L +++Y+G
Sbjct: 273 FTILYAGIIASGLVVYLQTWCIYKSGPVFVAVFQPLQTLLVAAMAFLILGDQLYSG 328

Arabidopsis thaliana (taxid: 3702)

>sp|F4IJ08|WTR15_ARATH WAT1-related protein At2g40900 OS=Arabidopsis thaliana GN=At2g40900 PE=2 SV=1

 Score =  196 bits (497), Expect = 2e-49,   Method: Compositional matrix adjust.
 Identities = 109/296 (36%), Positives = 169/296 (57%), Gaps = 4/296 (1%)

Query: 8   KPAMAMLALQFSYAVVALSTRAALLQGMNPRVFVVYRQAIATLFMAPMAYLSSRKYKSSS 67
           KP  AM+ LQF YA + L T+  L +GM+  V V YR A AT  +AP A LS RK +S  
Sbjct: 10  KPYFAMVCLQFGYAGMNLVTKTVLDRGMSHYVLVAYRNAFATAAIAPFALLSERKVRSK- 68

Query: 68  MGLRSFSLIFFIALLGVTINQNTYFEGLYLASSSMASAMGNLIPAITFVMASIVGLEKID 127
           M    F  IF +ALLG  I+QN Y+ GL L S + +SA+ N++PAIT ++A++  +EK++
Sbjct: 69  MTFPIFMRIFLLALLGPVIDQNLYYIGLKLTSPTFSSAVSNIVPAITIILATLFRMEKVE 128

Query: 128 LGSVRSVAKILGTIFCVGGAISMALLRGPKLLNTEFLPEKSFLFRSSGGENWLLGCLFLF 187
           +  VR + K++GT+  V G+I M   +GP +    F         S    ++L   +FL 
Sbjct: 129 MRKVRCLVKVMGTLVTVVGSILMIFYKGPFI---NFFRSHLTAASSPPTADYLKAAVFLL 185

Query: 188 ASACCWSLWLILQVPVSASYPDHLSLSAWMCFLATLQSATFAIFTEPDPEAWNLHSSLEI 247
            ++  W+ + +LQ      Y  HLS+S  +CF+ TLQS   A   E +P A N+   + +
Sbjct: 186 LASLSWASFFVLQAATLKKYSAHLSMSTMVCFMGTLQSLALAFVMEHNPSALNIGFDMNL 245

Query: 248 FCCFFSGAIGSGVSFCVQAWCISKRGPLFSAMFNPLCTVIVTILAALLLHEEIYTG 303
               ++G + S +++ VQ   + ++GP+F   FNPL  VIV+I++  +L + IY G
Sbjct: 246 LASAYAGIMSSSIAYYVQGLMMQRKGPVFVTAFNPLIVVIVSIMSFFVLGQGIYLG 301

Arabidopsis thaliana (taxid: 3702)

>sp|F4HZQ7|WTR5_ARATH WAT1-related protein At1g21890 OS=Arabidopsis thaliana GN=At1g21890 PE=2 SV=1

 Score =  192 bits (488), Expect = 2e-48,   Method: Compositional matrix adjust.
 Identities = 114/314 (36%), Positives = 167/314 (53%), Gaps = 15/314 (4%)

Query: 1   MSSLRDYKPAMAMLALQFSYAVVALSTRAALLQGMNPRVFVVYRQAIATLFMAPMAYLSS 60
           M+SL   KP +AM+++QF YA + + T  +L  GMN  V  VYR AIAT  +AP A    
Sbjct: 6   MNSL---KPYLAMISMQFGYAGMYIITMVSLKHGMNHYVLAVYRHAIATAVIAPFALFHE 62

Query: 61  RKYKSSSMGLRSFSLIFFIALLGVTINQNTYFEGLYLASSSMASAMGNLIPAITFVMASI 120
           RK +   M  R F  I  +  +   ++QN Y+ G+   S++ ASA  N++PAITFV+A I
Sbjct: 63  RKIRPK-MTFRIFLQIALLGFIEPVLDQNLYYVGMTYTSATFASATANVLPAITFVLAII 121

Query: 121 VGLEKIDLGSVRSVAKILGTIFCVGGAISMALLRGPKLLNTEFLPEKSFLFRSSG----- 175
             LE ++   VRS+AK++GT+  V GA+ M L +GP +    F          +G     
Sbjct: 122 FRLESVNFKKVRSIAKVVGTVITVSGALLMTLYKGPIVDFIRFGGGGGGGSDGAGGSHGG 181

Query: 176 ------GENWLLGCLFLFASACCWSLWLILQVPVSASYPDHLSLSAWMCFLATLQSATFA 229
                  ++W+ G L L      W+ + ILQ      YP  LSL+  +C + TL+    +
Sbjct: 182 AGAAAMDKHWIPGTLMLLGRTFGWAGFFILQSFTLKQYPAELSLTTLICLMGTLEGTAVS 241

Query: 230 IFTEPDPEAWNLHSSLEIFCCFFSGAIGSGVSFCVQAWCISKRGPLFSAMFNPLCTVIVT 289
           + T  D  AW +     +F   +SG I SGV++ VQ   + +RGP+F A FNPLC VI  
Sbjct: 242 LVTVRDLSAWKIGFDSNLFAAAYSGVICSGVAYYVQGVVMRERGPVFVATFNPLCVVITA 301

Query: 290 ILAALLLHEEIYTG 303
            L  ++L E I+ G
Sbjct: 302 ALGVVVLSESIHLG 315

Arabidopsis thaliana (taxid: 3702)

>sp|Q9LPF1|WTR8_ARATH WAT1-related protein At1g44800 OS=Arabidopsis thaliana GN=At1g44800 PE=1 SV=1

 Score =  188 bits (477), Expect = 5e-47,   Method: Compositional matrix adjust.
 Identities = 106/304 (34%), Positives = 169/304 (55%), Gaps = 5/304 (1%)

Query: 3   SLRDYKPAMAMLALQFSYAVVALSTRAALLQGMNPRVFVVYRQAIATLFMAPMAYLSSRK 62
           S+   KP +A+++LQF YA + + T  +   GM+  V   YR  +AT+ MAP A +  RK
Sbjct: 5   SMEKIKPILAIISLQFGYAGMYIITMVSFKHGMDHWVLATYRHVVATVVMAPFALMFERK 64

Query: 63  YKSSSMGLRSFSLIFFIALLGVTINQNTYFEGLYLASSSMASAMGNLIPAITFVMASIVG 122
            +   M L  F  +  + +L   ++QN Y+ GL   S+S  SA  N +PA+TF++A I  
Sbjct: 65  IRPK-MTLAIFWRLLALGILEPLMDQNLYYIGLKNTSASYTSAFTNALPAVTFILALIFR 123

Query: 123 LEKIDLGSVRSVAKILGTIFCVGGAISMALLRGPKLLNTEFLPEKSFLFRSSG---GENW 179
           LE ++   V SVAK++GT+  VGGA+ M L +GP +   +     SF   SS    G++W
Sbjct: 124 LETVNFRKVHSVAKVVGTVITVGGAMIMTLYKGPAIEIVK-AAHNSFHGGSSSTPTGQHW 182

Query: 180 LLGCLFLFASACCWSLWLILQVPVSASYPDHLSLSAWMCFLATLQSATFAIFTEPDPEAW 239
           +LG + +  S   W+ + ILQ      YP  LSL   +C + T+ +A  ++    DP AW
Sbjct: 183 VLGTIAIMGSISTWAAFFILQSYTLKVYPAELSLVTLICGIGTILNAIASLIMVRDPSAW 242

Query: 240 NLHSSLEIFCCFFSGAIGSGVSFCVQAWCISKRGPLFSAMFNPLCTVIVTILAALLLHEE 299
            +          +SG + SG+++ +Q+  I +RGP+F+  F+P+C +I   L AL+L E+
Sbjct: 243 KIGMDSGTLAAVYSGVVCSGIAYYIQSIVIKQRGPVFTTSFSPMCMIITAFLGALVLAEK 302

Query: 300 IYTG 303
           I+ G
Sbjct: 303 IHLG 306

Arabidopsis thaliana (taxid: 3702)

>sp|F4J9A3|WTR26_ARATH WAT1-related protein At3g53210 OS=Arabidopsis thaliana GN=At3g53210 PE=2 SV=1

 Score =  187 bits (475), Expect = 8e-47,   Method: Compositional matrix adjust.
 Identities = 103/303 (33%), Positives = 166/303 (54%), Gaps = 12/303 (3%)

Query: 8   KPAMAMLALQFSYAVVALSTRAALLQGMNPRVFVVYRQAIATLFMAPMAYLSSRKYKSSS 67
           K  +AM+  Q  YA   +  R AL  G++  VF +YR  +A   +AP AY   +K +  +
Sbjct: 9   KLHIAMVVFQTGYAGNHVIMRYALNLGVSKLVFPLYRTIVAFSVLAPSAYFLEKK-ERPA 67

Query: 68  MGLRSFSLIFFIALLGVTINQNTYFEGLYLASSSMASAMGNLIPAITFVMASIVGLEKID 127
           M +      F + L+G+T+NQ  Y  GL   S + ASA  N++PA++F+MA+++G+EK++
Sbjct: 68  MKISFLIQFFLLGLVGITLNQGFYIFGLDNTSPTFASATENVVPAVSFLMAALLGIEKVE 127

Query: 128 LGSVRSVAKILGTIFCVGGAISMALLRGP-------KLLNTEFLPEKSFLFRSSGGENWL 180
                 +AK++GTI  V G++ + L +GP        ++N    PE++        +NW 
Sbjct: 128 WKRKDGIAKVVGTIVSVAGSLVITLYKGPTIYQPSLNIVNQTIKPEEA----EEENKNWT 183

Query: 181 LGCLFLFASACCWSLWLILQVPVSASYPDHLSLSAWMCFLATLQSATFAIFTEPDPEAWN 240
           LGCL L     CWS W++LQ P+   YP   S  ++ CF A +Q    + + E D E W 
Sbjct: 184 LGCLCLMGHCLCWSSWIVLQSPLLKKYPARFSFVSYSCFFAVIQFFGISAYFERDLERWK 243

Query: 241 LHSSLEIFCCFFSGAIGSGVSFCVQAWCISKRGPLFSAMFNPLCTVIVTILAALLLHEEI 300
           + S  E++   ++G +GS + F +Q + + + GPLF + + PL T+I  +LA L L E  
Sbjct: 244 IISGGELYALLYTGLVGSAMVFAIQIYVVERGGPLFVSAYLPLQTLIAAVLATLALGEHF 303

Query: 301 YTG 303
           Y G
Sbjct: 304 YLG 306

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	304
224142317	371	predicted protein [Populus trichocarpa]	0.967	0.792	0.709	1e-121
224091873	322	predicted protein [Populus trichocarpa]	0.944	0.891	0.692	1e-114
449453922	369	PREDICTED: auxin-induced protein 5NG4-li	0.996	0.821	0.631	1e-104
449506258	365	PREDICTED: LOW QUALITY PROTEIN: auxin-in	0.983	0.819	0.628	1e-102
255574599	380	Auxin-induced protein 5NG4, putative [Ri	0.986	0.789	0.628	1e-100
224091869	348	predicted protein [Populus trichocarpa]	0.914	0.798	0.620	1e-100
357512833	530	Auxin-induced protein 5NG4 [Medicago tru	0.976	0.560	0.598	5e-99
356503305	367	PREDICTED: auxin-induced protein 5NG4-li	0.957	0.792	0.636	6e-98
15234742	373	nodulin MtN21 /EamA-like transporter fam	0.963	0.785	0.612	6e-98
297802988	371	predicted protein [Arabidopsis lyrata su	0.963	0.789	0.606	4e-97

>gi|224142317|ref|XP_002324505.1| predicted protein [Populus trichocarpa] gi|222865939|gb|EEF03070.1| predicted protein [Populus trichocarpa]

 Score =  439 bits (1129), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 215/303 (70%), Positives = 250/303 (82%), Gaps = 9/303 (2%)

Query: 1   MSSLRDYKPAMAMLALQFSYAVVALSTRAALLQGMNPRVFVVYRQAIATLFMAPMAYLSS 60
           M +  D KPA+AML +QFSYA+V+L  RAAL+QGM+PRVFVVYRQAIAT+ +AP+A+ S 
Sbjct: 1   MGAFEDSKPALAMLGMQFSYAIVSLIIRAALIQGMSPRVFVVYRQAIATVVIAPLAHFS- 59

Query: 61  RKYKSSSMGLRSFSLIFFIALLGVTINQNTYFEGLYLASSSMASAMGNLIPAITFVMASI 120
           RK   +SMGLRSFSL+F  +L+GVTINQN + EGLYLASSSMASAMGNL+PAITFVMA +
Sbjct: 60  RKSGGTSMGLRSFSLVFSASLIGVTINQNVFAEGLYLASSSMASAMGNLVPAITFVMAFL 119

Query: 121 VGLEKIDLGSVRSVAKILGTIFCVGGAISMALLRGPKLLNTEFLPEKSFLFRSSGGENWL 180
           +GLEKI++ S RS+AKI+GT+ CV GAISMALLRGPKLLNT            SGGE+WL
Sbjct: 120 IGLEKINIRSFRSIAKIVGTVICVSGAISMALLRGPKLLNTTIF--------ESGGEDWL 171

Query: 181 LGCLFLFASACCWSLWLILQVPVSASYPDHLSLSAWMCFLATLQSATFAIFTEPDPEAWN 240
           LGCL +FAS  CWS+WLILQVPV+ASYPDHLSLSAW+CFLATLQS    +F E D EAW 
Sbjct: 172 LGCLLIFASTFCWSIWLILQVPVTASYPDHLSLSAWLCFLATLQSGILTLFLEKDLEAWK 231

Query: 241 LHSSLEIFCCFFSGAIGSGVSFCVQAWCISKRGPLFSAMFNPLCTVIVTILAALLLHEEI 300
           LHS LE+  C F+G IGSG+SF VQAW IS+RGPLFSAMFNPLCTVIVTILAA+ LHEEI
Sbjct: 232 LHSYLEVVGCLFTGIIGSGISFFVQAWVISQRGPLFSAMFNPLCTVIVTILAAIFLHEEI 291

Query: 301 YTG 303
           YTG
Sbjct: 292 YTG 294

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224091873|ref|XP_002309381.1| predicted protein [Populus trichocarpa] gi|222855357|gb|EEE92904.1| predicted protein [Populus trichocarpa]

 Score =  417 bits (1073), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 205/296 (69%), Positives = 239/296 (80%), Gaps = 9/296 (3%)

Query: 8   KPAMAMLALQFSYAVVALSTRAALLQGMNPRVFVVYRQAIATLFMAPMAYLSSRKYKSSS 67
           KP +AM  LQFSYA+V+L TRAAL+ GM+PRVFVVYRQAIATL + P++Y S RK   +S
Sbjct: 1   KPTLAMFGLQFSYAIVSLITRAALIHGMSPRVFVVYRQAIATLVIVPVSYFSRRKSAGTS 60

Query: 68  MGLRSFSLIFFIALLGVTINQNTYFEGLYLASSSMASAMGNLIPAITFVMASIVGLEKID 127
           +GLRSF L+F  + +GVTINQN + EGLYLASSSMASAMGNL+PAITFVMA  +GLEKI 
Sbjct: 61  LGLRSFCLVFSASFIGVTINQNVFAEGLYLASSSMASAMGNLVPAITFVMAVALGLEKIK 120

Query: 128 LGSVRSVAKILGTIFCVGGAISMALLRGPKLLNTEFLPEKSFLFRSSGGENWLLGCLFLF 187
           +GS RS+AKI+GT+ CV GAISMALLRGPKLLN             SGGE+WLLGCLF+F
Sbjct: 121 IGSFRSIAKIVGTVICVSGAISMALLRGPKLLNKTIF--------GSGGEDWLLGCLFIF 172

Query: 188 ASACCWSLWLILQVPVSASYPDHLSLSAWMCFLATLQSATFAIFTEPDPEAWNLHSSLEI 247
            S CCWS+WLILQVP++ASYPDHLSLSAWMCFLATLQS    +F E D +AW LHS LE+
Sbjct: 173 VSTCCWSIWLILQVPLTASYPDHLSLSAWMCFLATLQSGILTLFLEKDLDAWKLHSYLEL 232

Query: 248 FCCFFSGAIGSGVSFCVQAWCISKRGPLFSAMFNPLCTVIVTILAALLLHEEIYTG 303
             C F+ + GSG+SF VQAW I +RGPLFSAMFNPLCTVIVT+LAA+ LHEEIYTG
Sbjct: 233 VGCLFTVS-GSGLSFFVQAWVICQRGPLFSAMFNPLCTVIVTVLAAIFLHEEIYTG 287

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449453922|ref|XP_004144705.1| PREDICTED: auxin-induced protein 5NG4-like [Cucumis sativus]

 Score =  384 bits (987), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 194/307 (63%), Positives = 246/307 (80%), Gaps = 4/307 (1%)

Query: 1   MSSLRDYKPAMAMLALQFSYAVVALSTRAALLQGMNPRVFVVYRQAIATLFMAPMAYLSS 60
           M  + +Y PAMAM  LQ +YA++AL +RAALL+GM+PRVFVVYRQA+ATLF+AP+AY S 
Sbjct: 1   MGFVEEYLPAMAMFGLQVTYAIMALLSRAALLKGMSPRVFVVYRQAVATLFIAPIAYFSR 60

Query: 61  RKYKSSSMGLRSFSLIFFIALLGVTINQNTYFEGLYLASSSMASAMGNLIPAITFVMASI 120
            K +  S+ LRSFSLIF  +L+GVT+NQN YFEG++L SSSMA+AM NLIPA+TFV+A+I
Sbjct: 61  SKSRRVSLNLRSFSLIFLASLVGVTMNQNVYFEGVFLVSSSMATAMTNLIPAVTFVIATI 120

Query: 121 VGLEKIDLGSVRSVAKILGTIFCVGGAISMALLRGPKLLN-TEFLPEKSFLFRSS-GGEN 178
           VG+E + +GS+RS+AKI GT+ CV GA+ MALLRGPKLLN T+    KS +F    GG+ 
Sbjct: 121 VGMENLKMGSLRSMAKIGGTVVCVSGAMCMALLRGPKLLNSTQDFGLKSTIFGVEIGGQT 180

Query: 179 -WLLGCLFLFASACCWSLWLILQVPVSASYPDHLSLSAWMCFLATLQSATFAIFTEP-DP 236
            WLLG L LF S CCWS+WLILQVP SASYPD+LSLSAWMC + T+QS    +  EP + 
Sbjct: 181 AWLLGSLCLFCSCCCWSIWLILQVPASASYPDNLSLSAWMCLMGTIQSIILTLLVEPINL 240

Query: 237 EAWNLHSSLEIFCCFFSGAIGSGVSFCVQAWCISKRGPLFSAMFNPLCTVIVTILAALLL 296
           + W +HS++E+ C  FSG +GSGV+F VQAWC+SKRGP+FSAMFNPLCT++ TILAA++L
Sbjct: 241 QTWKIHSTIELICYLFSGIVGSGVAFFVQAWCVSKRGPVFSAMFNPLCTIVTTILAAIVL 300

Query: 297 HEEIYTG 303
           HEEI+TG
Sbjct: 301 HEEIFTG 307

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449506258|ref|XP_004162696.1| PREDICTED: LOW QUALITY PROTEIN: auxin-induced protein 5NG4-like [Cucumis sativus]

 Score =  377 bits (968), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 193/307 (62%), Positives = 244/307 (79%), Gaps = 8/307 (2%)

Query: 1   MSSLRDYKPAMAMLALQFSYAVVALSTRAALLQGMNPRVFVVYRQAIATLFMAPMAYLSS 60
           M  + +Y PAMAM  LQ +YA++AL +RAALL+GM+PR+FVVYRQA+ATLF+AP+AY S 
Sbjct: 1   MGFVEEYLPAMAMFGLQVTYAIMALLSRAALLKGMSPRIFVVYRQAVATLFIAPIAYFSR 60

Query: 61  RKYKSSSMGLRSFSLIFFIALLGVTINQNTYFEGLYLASSSMASAMGNLIPAITFVMASI 120
           R     S+ LRSFSLIF  +L+GVT+NQN YFEG +L SSSMA+AM NLIPA+TFV+A+I
Sbjct: 61  R----VSLNLRSFSLIFLASLVGVTMNQNVYFEGXFLVSSSMATAMTNLIPAVTFVIATI 116

Query: 121 VGLEKIDLGSVRSVAKILGTIFCVGGAISMALLRGPKLLN-TEFLPEKSFLFRSS-GGEN 178
           VG+E + +GS+RS+AKI GT+ CV GA+ MALLRGPKLLN T+    KS +F    GG+ 
Sbjct: 117 VGMENLKMGSLRSMAKIGGTVVCVSGAMCMALLRGPKLLNSTQDFGLKSTIFGVEIGGQT 176

Query: 179 -WLLGCLFLFASACCWSLWLILQVPVSASYPDHLSLSAWMCFLATLQSATFAIFTEP-DP 236
            WLLG L LF S CCWS+WLILQVP SASYPD+LSLSAWMC + T+QS    +  EP + 
Sbjct: 177 AWLLGSLCLFCSCCCWSIWLILQVPASASYPDNLSLSAWMCLMGTIQSIILTLLVEPINL 236

Query: 237 EAWNLHSSLEIFCCFFSGAIGSGVSFCVQAWCISKRGPLFSAMFNPLCTVIVTILAALLL 296
           + W +HS++E+ C  FSG +GSGV+F VQAWC+SKRGP+FSAMFNPLCT++ TILAA++L
Sbjct: 237 QTWKIHSTIELICYLFSGIVGSGVAFFVQAWCVSKRGPVFSAMFNPLCTIVTTILAAIVL 296

Query: 297 HEEIYTG 303
           HEEI+TG
Sbjct: 297 HEEIFTG 303

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255574599|ref|XP_002528210.1| Auxin-induced protein 5NG4, putative [Ricinus communis] gi|223532371|gb|EEF34167.1| Auxin-induced protein 5NG4, putative [Ricinus communis]

 Score =  370 bits (950), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 191/304 (62%), Positives = 237/304 (77%), Gaps = 4/304 (1%)

Query: 1   MSSLRDYKPAMAMLALQFSYAVVALSTRAALLQGMNPRVFVVYRQAIATLFMAPMAYLS- 59
           M    D KP +AM+ LQF YA V+L TRAAL+QGMN RVFVVYRQ IATL MAP+AYLS 
Sbjct: 1   MGRFDDCKPVIAMVGLQFIYAGVSLFTRAALVQGMNTRVFVVYRQGIATLIMAPLAYLSV 60

Query: 60  SRKYKSSSMGLRSFSLIFFIALLGVTINQNTYFEGLYLASSSMASAMGNLIPAITFVMAS 119
            RK + SS+GL+ F+ I   +L+G+T NQN YFEGL+L SS+  +AM NLIPAITFVMA+
Sbjct: 61  RRKPRMSSLGLKFFAWISLASLIGITANQNAYFEGLFLTSSTATTAMTNLIPAITFVMAA 120

Query: 120 IVGLEKIDLGSVRSVAKILGTIFCVGGAISMALLRGPKLLNTEFLPEKSFLFRSSGGENW 179
           I G+EK+++ ++RS+AKI+GT+ CV GAISMALL+GPKLLN++ LP  S L  SS G+NW
Sbjct: 121 IFGMEKVNIRNLRSIAKIIGTVICVTGAISMALLKGPKLLNSKLLPPMSTL--SSEGDNW 178

Query: 180 LLGCLFLFASACCWSLWLILQVPVSASYPDHLSLSAWMCFLATLQSATFAIFTEPDPEAW 239
           LLGC+FLF S+C WS W+ILQVP+S S PDHL  SAWM FLAT++SA  A+  E +  AW
Sbjct: 179 LLGCIFLFGSSCFWSFWMILQVPISESCPDHLYSSAWMGFLATIESAIIALSLEKNGAAW 238

Query: 240 NLHSSLEIFCCFFSGAIGSGVSFCVQAWCISKRGPLFSAMFNPLCTVIVTILAALLLHEE 299
            L+S LE+ CC ++G +G  VSF +QAWCIS+RGPLFSAMFNPLCTVI  I+AA+ LHEE
Sbjct: 239 KLNSYLEMGCCLYAG-VGLAVSFFLQAWCISQRGPLFSAMFNPLCTVITAIIAAIFLHEE 297

Query: 300 IYTG 303
            Y G
Sbjct: 298 TYLG 301

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224091869|ref|XP_002309380.1| predicted protein [Populus trichocarpa] gi|222855356|gb|EEE92903.1| predicted protein [Populus trichocarpa]

 Score =  370 bits (949), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 188/303 (62%), Positives = 227/303 (74%), Gaps = 25/303 (8%)

Query: 1   MSSLRDYKPAMAMLALQFSYAVVALSTRAALLQGMNPRVFVVYRQAIATLFMAPMAYLSS 60
           M     YKPAM M+ LQF YA VAL TRAAL++G++P+VFVVYRQ IATL MAP+AY+S 
Sbjct: 1   MGGFDAYKPAMGMVGLQFIYAGVALFTRAALVRGLSPKVFVVYRQGIATLIMAPLAYVSR 60

Query: 61  RKYKSSSMGLRSFSLIFFIALLGVTINQNTYFEGLYLASSSMASAMGNLIPAITFVMASI 120
           R                      VT NQN YFEGLYL+SS+ ASA+ NL+PAITFVMA+I
Sbjct: 61  R----------------------VTANQNAYFEGLYLSSSTAASALTNLMPAITFVMAAI 98

Query: 121 VGLEKIDLGSVRSVAKILGTIFCVGGAISMALLRGPKLLNTEFLPEKSFLFRSSGGENWL 180
            GLEK+++ S+R+++KILGT+ CV GAI+MALL+GPKLLNTE LP KSF   S G +NWL
Sbjct: 99  SGLEKVNVRSLRTISKILGTVICVSGAIAMALLKGPKLLNTELLPTKSFF--SPGSDNWL 156

Query: 181 LGCLFLFASACCWSLWLILQVPVSASYPDHLSLSAWMCFLATLQSATFAIFTEPDPEAWN 240
           LGCLFLF S+C WSLW++LQVP+SAS PDHL  SAWMCFLA+LQS+  A+F E D  +W 
Sbjct: 157 LGCLFLFGSSCFWSLWMVLQVPISASCPDHLYSSAWMCFLASLQSSMIALFAEKDLTSWK 216

Query: 241 LHSSLEIFCCFFSGAIGSGVSFCVQAWCISKRGPLFSAMFNPLCTVIVTILAALLLHEEI 300
           L + LEI  C ++G IG  VSF VQAW IS+RGPLFSAMFNPLCTVIV I +A++LHEE 
Sbjct: 217 LITHLEIASCLYAG-IGLAVSFFVQAWVISQRGPLFSAMFNPLCTVIVGIFSAVVLHEET 275

Query: 301 YTG 303
           Y G
Sbjct: 276 YAG 278

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357512833|ref|XP_003626705.1| Auxin-induced protein 5NG4 [Medicago truncatula] gi|355520727|gb|AET01181.1| Auxin-induced protein 5NG4 [Medicago truncatula]

 Score =  366 bits (940), Expect = 5e-99,   Method: Compositional matrix adjust.
 Identities = 179/299 (59%), Positives = 231/299 (77%), Gaps = 2/299 (0%)

Query: 7   YKPAMAMLALQFSYAVVALSTRAALLQGMNPRVFVVYRQAIATLFMAPMAYLSSRKYKSS 66
           Y P M M+ +QF YA + L  R  LL+GM+P VFVVYR A AT+F+AP+AY S R   S 
Sbjct: 9   YMPIMVMVLIQFIYAGMNLGIRVTLLEGMSPNVFVVYRSAFATIFLAPIAYFSGRNSASY 68

Query: 67  SMGLRSFSLIFFIALLGVTINQNTYFEGLYLASSSMASAMGNLIPAITFVMASIVGLEKI 126
           S+ LRSFSLIF  +  GVT+ QN YFEGLYL+SSS+ASAM NLIPA+TFV+A +  +EK+
Sbjct: 69  SLNLRSFSLIFMTSGRGVTLTQNLYFEGLYLSSSSIASAMTNLIPAVTFVIAVLARMEKV 128

Query: 127 DLGSVRSVAKILGTIFCVGGAISMALLRGPKLLNTE-FLPEKSFLFRSSGGEN-WLLGCL 184
           ++ S+R++AKI+GT+ CV GA+S+ALL+GPKLLN E  LP KS +  +SG ++ WLLGC+
Sbjct: 129 NIRSLRTIAKIVGTLICVCGALSIALLKGPKLLNAENILPTKSIMAITSGSDDSWLLGCV 188

Query: 185 FLFASACCWSLWLILQVPVSASYPDHLSLSAWMCFLATLQSATFAIFTEPDPEAWNLHSS 244
           +L  S+  WSLWLILQVP  AS+P++LSLSAWMCF+ATLQSA   +F EPD  AW ++S 
Sbjct: 189 YLLGSSVAWSLWLILQVPAYASHPNYLSLSAWMCFMATLQSALVTLFLEPDLNAWKINSL 248

Query: 245 LEIFCCFFSGAIGSGVSFCVQAWCISKRGPLFSAMFNPLCTVIVTILAALLLHEEIYTG 303
           L+  C  ++G +GS   FC+QAWCI+KRGPLFSA+F+PL T++VTILA LLLHEEIY G
Sbjct: 249 LQFGCALYAGIMGSAFVFCLQAWCITKRGPLFSAVFSPLLTILVTILAVLLLHEEIYIG 307

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356503305|ref|XP_003520451.1| PREDICTED: auxin-induced protein 5NG4-like [Glycine max]

 Score =  363 bits (931), Expect = 6e-98,   Method: Compositional matrix adjust.
 Identities = 187/294 (63%), Positives = 228/294 (77%), Gaps = 3/294 (1%)

Query: 11  MAMLALQFSYAVVALSTRAALLQGMNPRVFVVYRQAIATLFMAPMAYLSS-RKYKSSSMG 69
           MAML  Q  YA ++LSTR A LQGM+PRVFVVYR A AT+ +AP+AY S  R   S  + 
Sbjct: 1   MAMLFNQSIYAGISLSTRVAFLQGMSPRVFVVYRHAFATIVIAPIAYFSGWRNSGSYYLN 60

Query: 70  LRSFSLIFFIALLGVTINQNTYFEGLYLASSSMASAMGNLIPAITFVMASIVGLEKIDLG 129
           L+SFS IF  +L+G+T+NQN +FEGLYLASSS+ASAM NL+PA+TF++A+  G+EK+++ 
Sbjct: 61  LKSFSWIFLTSLIGITLNQNLFFEGLYLASSSVASAMANLVPAVTFIIAACAGMEKVNIR 120

Query: 130 SVRSVAKILGTIFCVGGAISMALLRGPKLLNTEFLPEKSFLFRSSGGENWLLGCLFLFAS 189
           S RS+AKI+GT+ CV GA+SMALL+GPKLLN E LP KS +  +SGG++WLLGCLFL   
Sbjct: 121 STRSLAKIIGTVICVSGAVSMALLKGPKLLNAEILPSKSIM--ASGGDHWLLGCLFLTGC 178

Query: 190 ACCWSLWLILQVPVSASYPDHLSLSAWMCFLATLQSATFAIFTEPDPEAWNLHSSLEIFC 249
            C WS+WLIL VP S S+PDHLS SAWMCF+ATLQS    +  EPDP AW ++S LE  C
Sbjct: 179 CCAWSVWLILMVPASTSHPDHLSFSAWMCFMATLQSTLVTLLLEPDPHAWKINSLLEFGC 238

Query: 250 CFFSGAIGSGVSFCVQAWCISKRGPLFSAMFNPLCTVIVTILAALLLHEEIYTG 303
             +SG IGS V   +QAWCIS RGPLF AMFNPL TVIVTILAALLLHEEIY+G
Sbjct: 239 TLYSGVIGSAVLLFIQAWCISLRGPLFCAMFNPLFTVIVTILAALLLHEEIYSG 292

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|15234742|ref|NP_194771.1| nodulin MtN21 /EamA-like transporter family protein [Arabidopsis thaliana] gi|7269943|emb|CAB79760.1| nodulin-like protein [Arabidopsis thaliana] gi|332660363|gb|AEE85763.1| nodulin MtN21 /EamA-like transporter family protein [Arabidopsis thaliana]

 Score =  363 bits (931), Expect = 6e-98,   Method: Compositional matrix adjust.
 Identities = 182/297 (61%), Positives = 219/297 (73%), Gaps = 4/297 (1%)

Query: 11  MAMLALQFSYAVVALSTRAALLQGMNPRVFVVYRQAIATLFMAPMAYLSSRKYKS--SSM 68
           MAM  +Q  YA V L  RA L+ G++PRVF++YRQA AT+F+ P  YLS RK K   SS+
Sbjct: 1   MAMTMIQLCYAGVTLFARATLVHGLSPRVFILYRQAFATIFIFPFLYLSRRKSKIAISSL 60

Query: 69  GLRSFSLIFFIALLGVTINQNTYFEGLYLASSSMASAMGNLIPAITFVMASIVGLEKIDL 128
            L+SFSLIF ++L+G+TINQN Y EGLYL SSSM SA+GN+IPAITF+++ + G EK++L
Sbjct: 61  DLKSFSLIFLVSLIGITINQNLYLEGLYLTSSSMGSAVGNIIPAITFLISFLAGYEKLNL 120

Query: 129 GSVRSVAKILGTIFCVGGAISMALLRGPKLLNTE-FLP-EKSFLFRSSGGENWLLGCLFL 186
             +R +AKI GTI CV GAISM LLRGPK+LN+E  LP  KS L        WL+GCLFL
Sbjct: 121 RDIRGLAKIAGTILCVAGAISMTLLRGPKILNSESALPIAKSVLGHLKDQNTWLIGCLFL 180

Query: 187 FASACCWSLWLILQVPVSASYPDHLSLSAWMCFLATLQSATFAIFTEPDPEAWNLHSSLE 246
           F+S  CWS WLILQVP+SA YPD+LSLSAWMC   T+Q A    F E DP AW LHS  E
Sbjct: 181 FSSTLCWSFWLILQVPISAYYPDNLSLSAWMCLFGTIQCAVVTFFLEKDPNAWILHSYSE 240

Query: 247 IFCCFFSGAIGSGVSFCVQAWCISKRGPLFSAMFNPLCTVIVTILAALLLHEEIYTG 303
              C ++G   S +SF VQAW I+KRGP+FSA+FNPLCTVIVTILAAL  HEEIYTG
Sbjct: 241 FATCLYAGIGASALSFTVQAWAIAKRGPVFSALFNPLCTVIVTILAALFFHEEIYTG 297

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297802988|ref|XP_002869378.1| predicted protein [Arabidopsis lyrata subsp. lyrata] gi|297315214|gb|EFH45637.1| predicted protein [Arabidopsis lyrata subsp. lyrata]

 Score =  360 bits (924), Expect = 4e-97,   Method: Compositional matrix adjust.
 Identities = 180/297 (60%), Positives = 219/297 (73%), Gaps = 4/297 (1%)

Query: 11  MAMLALQFSYAVVALSTRAALLQGMNPRVFVVYRQAIATLFMAPMAYLSSRKYKS--SSM 68
           MAM  +Q  YA V L  RA L+ G++PRVF++YRQA AT+F+ P  YLS RK K   SS+
Sbjct: 1   MAMTMIQLCYAGVTLFARATLVHGLSPRVFILYRQAFATIFIFPFLYLSRRKSKIAISSL 60

Query: 69  GLRSFSLIFFIALLGVTINQNTYFEGLYLASSSMASAMGNLIPAITFVMASIVGLEKIDL 128
            L+SFSLIF ++L+G+TINQN Y EGLYL SSSM SA+GN+IPAITF+++ + G EK+++
Sbjct: 61  DLKSFSLIFLVSLIGITINQNLYLEGLYLTSSSMGSAVGNIIPAITFLISFLAGYEKLNI 120

Query: 129 GSVRSVAKILGTIFCVGGAISMALLRGPKLLNTE-FLP-EKSFLFRSSGGENWLLGCLFL 186
             +R +AKI GTI CV GAISM LLRGPK+LN+E  LP +KS L        WL+GCLFL
Sbjct: 121 RDIRGLAKIAGTILCVAGAISMTLLRGPKILNSESALPIDKSVLGNLKDQNTWLIGCLFL 180

Query: 187 FASACCWSLWLILQVPVSASYPDHLSLSAWMCFLATLQSATFAIFTEPDPEAWNLHSSLE 246
           F+S  CWS WLILQVP+SA YPD+LSLSAWMC   T+Q A    F E DP AW LHS  E
Sbjct: 181 FSSTLCWSFWLILQVPISAYYPDNLSLSAWMCLFGTIQCAVVTFFLEKDPNAWILHSYSE 240

Query: 247 IFCCFFSGAIGSGVSFCVQAWCISKRGPLFSAMFNPLCTVIVTILAALLLHEEIYTG 303
              C ++G   S +SF VQAW I+KRGP+FSA+FNPLCTVIVTILAAL   EEIYTG
Sbjct: 241 FATCLYAGIGASALSFTVQAWAIAKRGPVFSALFNPLCTVIVTILAALFFQEEIYTG 297

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	304
TAIR|locus:2118686	373	UMAMIT34 "AT4G30420" [Arabidop	0.963	0.785	0.592	1.2e-90
TAIR|locus:2132982	359	UMAMIT33 "Usually multiple aci	0.937	0.793	0.485	8.9e-70
TAIR|locus:2005689	389	WAT1 "Walls Are Thin 1" [Arabi	0.960	0.750	0.387	2.3e-55
UNIPROTKB|Q6J163	410	Q6J163 "Auxin-induced protein	0.953	0.707	0.380	1.5e-51
TAIR|locus:2039792	374	UMAMIT14 "AT2G39510" [Arabidop	0.990	0.804	0.377	1.2e-49
TAIR|locus:2092702	383	UMAMIT4 "AT3G18200" [Arabidops	0.970	0.770	0.361	3.2e-49
TAIR|locus:2058460	394	UMAMIT11 "Usually multiple aci	0.960	0.741	0.361	2.6e-47
TAIR|locus:2176065	359	UMAMIT21 "AT5G64700" [Arabidop	0.970	0.821	0.350	2.7e-45
TAIR|locus:2194864	370	SIAR1 "Siliques Are Red 1" [Ar	0.983	0.808	0.335	4.4e-45
TAIR|locus:2031144	343	UMAMIT22 "Usually multiple aci	0.970	0.860	0.326	4.4e-45

TAIR|locus:2118686 UMAMIT34 "AT4G30420" [Arabidopsis thaliana (taxid:3702)]

 Score = 904 (323.3 bits), Expect = 1.2e-90, P = 1.2e-90
 Identities = 176/297 (59%), Positives = 212/297 (71%)

Query:    11 MAMLALQFSYAVVALSTRAALLQGMNPRVFVVYRQAIATLFMAPMAYLSSRKYKS--SSM 68
             MAM  +Q  YA V L  RA L+ G++PRVF++YRQA AT+F+ P  YLS RK K   SS+
Sbjct:     1 MAMTMIQLCYAGVTLFARATLVHGLSPRVFILYRQAFATIFIFPFLYLSRRKSKIAISSL 60

Query:    69 GLRSFSLIFFIALLGVTINQNTYFEGLYLXXXXXXXXXGNLIPAITFVMASIVGLEKIDL 128
              L+SFSLIF ++L+G+TINQN Y EGLYL         GN+IPAITF+++ + G EK++L
Sbjct:    61 DLKSFSLIFLVSLIGITINQNLYLEGLYLTSSSMGSAVGNIIPAITFLISFLAGYEKLNL 120

Query:   129 GSVRSVAKILGTIFCVGGAISMALLRGPKLLNTEF-LP-EKSFLFRSSGGENWLLGCLFL 186
               +R +AKI GTI CV GAISM LLRGPK+LN+E  LP  KS L        WL+GCLFL
Sbjct:   121 RDIRGLAKIAGTILCVAGAISMTLLRGPKILNSESALPIAKSVLGHLKDQNTWLIGCLFL 180

Query:   187 FASACCWSLWLILQVPVSASYPDHLSLSAWMCFLATLQSATFAIFTEPDPEAWNLHSSLE 246
             F+S  CWS WLILQVP+SA YPD+LSLSAWMC   T+Q A    F E DP AW LHS  E
Sbjct:   181 FSSTLCWSFWLILQVPISAYYPDNLSLSAWMCLFGTIQCAVVTFFLEKDPNAWILHSYSE 240

Query:   247 IFCCFFSGAIGSGVSFCVQAWCISKRGPLFSAMFNPLCTVIVTILAALLLHEEIYTG 303
                C ++G   S +SF VQAW I+KRGP+FSA+FNPLCTVIVTILAAL  HEEIYTG
Sbjct:   241 FATCLYAGIGASALSFTVQAWAIAKRGPVFSALFNPLCTVIVTILAALFFHEEIYTG 297

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

GO:0016020 "membrane" evidence=IEA;ISS

TAIR|locus:2132982 UMAMIT33 "Usually multiple acids move in and out Transporters 33" [Arabidopsis thaliana (taxid:3702)]

 Score = 707 (253.9 bits), Expect = 8.9e-70, P = 8.9e-70
 Identities = 146/301 (48%), Positives = 196/301 (65%)

Query:     7 YKPAMAMLALQFSYAVVALSTRAALLQGMNPRVFVVYRQAIATLFMAPMAYLSS-RKYKS 65
             YK  +A++ LQF+ A VAL T+AA ++G+NP VFVVYRQAIATLF+ P++++S+ RK   
Sbjct:     6 YKAVLALVMLQFTSAGVALFTKAAFMEGLNPTVFVVYRQAIATLFICPISFISAWRKENK 65

Query:    66 SSMGLRSFSLIFFIALLGVTINQNTYFEGLYLXXXXXXXXXGNLIPAITFVMASIVGLEK 125
              S+G+R F  +   A++GVT+NQN YF+G+ L          NLIPA+TF+++ IVG E 
Sbjct:    66 PSLGVRGFWWVALTAVIGVTVNQNAYFKGIDLSSSSMACAMTNLIPAVTFIISIIVGFES 125

Query:   126 IDLGSVRSVAKILGTIFCVGGAISMALLRGPKLLNTEFLPEKSFLFRSSGGENWLLGCLF 185
             I   S++SVAK++GT  CVGGA++M  LRGPKLLN            +     WLLGC F
Sbjct:   126 IKRRSMKSVAKVIGTGVCVGGAMAMTFLRGPKLLNA---------LLNQDNTAWLLGCFF 176

Query:   186 LFASACCWSLWLILQVPVSASYPDHLSLSAWMCFLATLQSATFAIF---TEPDPEAWNLH 242
             L  S   WSLWLILQVP+++  PDHL  SA  CF+AT+ S   A+    T   P  W L 
Sbjct:   177 LLISTFAWSLWLILQVPIASHCPDHLYTSACTCFIATIASFLVALALGNTHLPP--WKLD 234

Query:   243 SSLEIFCCFFSGAIGSGVSFCVQAWCISKRGPLFSAMFNPLCTVIVTILAALLLHEEIYT 302
             S L++ CC +SG     +SF +QAW +S++GP+FSA+FNPL  VIVT   AL L E+ Y 
Sbjct:   235 SFLKLSCCIYSG-FQLAISFFLQAWIVSQKGPVFSALFNPLSAVIVTFFGALYLKEQTYL 293

Query:   303 G 303
             G
Sbjct:   294 G 294

GO:0009507 "chloroplast" evidence=ISM

GO:0016020 "membrane" evidence=IEA;ISS

TAIR|locus:2005689 WAT1 "Walls Are Thin 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 571 (206.1 bits), Expect = 2.3e-55, P = 2.3e-55
 Identities = 117/302 (38%), Positives = 171/302 (56%)

Query:    11 MAMLALQFSYAVVALSTRAALLQGMNPRVFVVYRQAIATLFMAPMAYLSSRKYKSSSMGL 70
             +AML LQF YA   + +RAAL  G++  VF VYR  IA L + P AY   +K + + + L
Sbjct:    22 IAMLTLQFGYAGFHVVSRAALNMGISKLVFPVYRNIIALLLLLPFAYFLEKKERPA-ITL 80

Query:    71 RSFSLIFFIALLGVTINQNTYFEGLYLXXXXXXXXXGNLIPAITFVMASIVGLEKIDLGS 130
                   FF+AL+G+T NQ  Y  GL            N +PAITF+MA+++ +EK+ +  
Sbjct:    81 NFLIQFFFLALIGITANQGFYLLGLDNTSPTFASSMQNSVPAITFLMAALLRIEKVRINR 140

Query:   131 VRSVAKILGTIFCVGGAISMALLRGPKL------LNTEFLPEKSFLFRSSGG---ENWLL 181
                ++KILGT  CV GA  + L +GP +      L+   L   S +    G    +NW L
Sbjct:   141 RDGISKILGTALCVAGASVITLYKGPTIYTPASHLHAHLLTTNSAVLAPLGNAAPKNWTL 200

Query:   182 GCLFLFASACCWSLWLILQVPVSASYPDHLSLSAWMCFLATLQSATFAIFTEPDPEAWNL 241
             GC++L      WS WL+ Q PV  SYP  LS++++ CF   +Q    A F E D +AW  
Sbjct:   201 GCIYLIGHCLSWSGWLVFQAPVLKSYPARLSVTSYTCFFGIIQFLIIAAFCERDSQAWVF 260

Query:   242 HSSLEIFCCFFSGAIGSGVSFCVQAWCISKRGPLFSAMFNPLCTVIVTILAALLLHEEIY 301
             HS  E+F   ++G + SG++F VQ WCI + GP+F A++ P+ T++V I+A++ L EE Y
Sbjct:   261 HSGWELFTILYAGIVASGIAFAVQIWCIDRGGPVFVAVYQPVQTLVVAIMASIALGEEFY 320

Query:   302 TG 303
              G
Sbjct:   321 LG 322

GO:0016020 "membrane" evidence=IEA;ISS

GO:0005886 "plasma membrane" evidence=IDA

GO:0005774 "vacuolar membrane" evidence=IDA

GO:0009705 "plant-type vacuole membrane" evidence=IDA

GO:0009826 "unidimensional cell growth" evidence=IMP

GO:0009834 "secondary cell wall biogenesis" evidence=IMP

GO:0090355 "positive regulation of auxin metabolic process" evidence=IMP

GO:0090358 "positive regulation of tryptophan metabolic process" evidence=IMP

GO:0000271 "polysaccharide biosynthetic process" evidence=RCA

GO:0006833 "water transport" evidence=RCA

GO:0007389 "pattern specification process" evidence=RCA

GO:0008361 "regulation of cell size" evidence=RCA

GO:0009651 "response to salt stress" evidence=RCA

GO:0009750 "response to fructose stimulus" evidence=RCA

GO:0009825 "multidimensional cell growth" evidence=RCA

GO:0009926 "auxin polar transport" evidence=RCA

GO:0009932 "cell tip growth" evidence=RCA

GO:0010015 "root morphogenesis" evidence=RCA

GO:0010075 "regulation of meristem growth" evidence=RCA

GO:0010817 "regulation of hormone levels" evidence=RCA

GO:0040007 "growth" evidence=RCA

GO:0043481 "anthocyanin accumulation in tissues in response to UV light" evidence=RCA

GO:0048767 "root hair elongation" evidence=RCA

GO:0071555 "cell wall organization" evidence=RCA

UNIPROTKB|Q6J163 Q6J163 "Auxin-induced protein 5NG4" [Pinus taeda (taxid:3352)]

 Score = 535 (193.4 bits), Expect = 1.5e-51, P = 1.5e-51
 Identities = 115/302 (38%), Positives = 172/302 (56%)

Query:    12 AMLALQFSYAVVALSTRAALLQGMNPRVFVVYRQAIATLFMAPMAYLSSRKYKSSSMGLR 71
             AMLALQF YA   + +RAAL  G++  VF VYR  +A + + P AY   +K + + + L 
Sbjct:    22 AMLALQFGYAGFHIVSRAALNMGVSKVVFPVYRNILALMLIGPCAYFLEKKERPA-LTL- 79

Query:    72 SFSLIFFI-ALLGVTINQNTYFEGLYLXXXXXXXXXGNLIPAITFVMASIVGLEKIDLGS 130
             SF + FF+ AL G+T         + L          N +PAITF+MA+ + LEK+ +  
Sbjct:    80 SFLIQFFLLALCGITGQSRILSLRIVLHIPTFASAIQNSVPAITFIMAAALRLEKVHISR 139

Query:   131 VRSVAKILGTIFCVGGAISMALLRGPKLL-----NTEFLPE--KSFLFR--SSGGENWLL 181
                +AKI+GT+ CV GA  + L +GP +      N E      K+F     S+  ENW L
Sbjct:   140 RDGLAKIIGTVACVSGATIITLYKGPPITHIWRPNLEVTASYFKAFQGNDLSAKSENWTL 199

Query:   182 GCLFLFASACCWSLWLILQVPVSASYPDHLSLSAWMCFLATLQSATFAIFTEPDPEAWNL 241
             GC++L  +   WS W++LQ PV   YP  LS++++ CF   +Q    A F E D E W +
Sbjct:   200 GCIYLLGNCLAWSGWIVLQAPVLKRYPARLSVTSFTCFFGVIQFLIIAAFFETDLEHWKI 259

Query:   242 HSSLEIFCCFFSGAIGSGVSFCVQAWCISKRGPLFSAMFNPLCTVIVTILAALLLHEEIY 301
             HS  E+F   ++G + SG++F VQ WCI + GP+F A++ P+ T+ V I+A+++L E+ Y
Sbjct:   260 HSGGELFTILYAGFVASGIAFSVQIWCIDRGGPVFVAVYQPVQTIAVAIMASIILGEQFY 319

Query:   302 TG 303
              G
Sbjct:   320 LG 321

GO:0003674 "molecular_function" evidence=ND

GO:0005737 "cytoplasm" evidence=IDA

GO:0005887 "integral to plasma membrane" evidence=NAS

GO:0005938 "cell cortex" evidence=IDA

GO:0006810 "transport" evidence=NAS

GO:0009734 "auxin mediated signaling pathway" evidence=IDA

TAIR|locus:2039792 UMAMIT14 "AT2G39510" [Arabidopsis thaliana (taxid:3702)]

 Score = 517 (187.1 bits), Expect = 1.2e-49, P = 1.2e-49
 Identities = 115/305 (37%), Positives = 173/305 (56%)

Query:     3 SLRDYKPAMAMLALQFSYAVVALSTRAALLQGMNPRVFVVYRQAIATLFMAPMAYLSSRK 62
             +L+ +KP + +++LQF YA +++  + AL QGM+P V   YR  +AT+F+AP AY   RK
Sbjct:     2 ALKTWKPFITVVSLQFGYAGLSIIAKFALNQGMSPHVLASYRHIVATIFIAPFAYFLDRK 61

Query:    63 YKSSSMGLRSFSLIFFIALLGVTINQNTYFEGLYLXXXXXXXXXGNLIPAITFVMASIVG 122
              +   M L  F  I  + LL  TI+QN Y+ G+            N++PA  F+MA I  
Sbjct:    62 IRPK-MTLSIFFKILLLGLLEPTIDQNLYYTGMKYTSATFTAAMTNVLPAFAFIMAWIFR 120

Query:   123 LEKIDLGSVRSVAKILGTIFCVGGAISMALLRGPKLLNTEFLPEKSFLFRSSGG-ENWLL 181
             LEK+++  + S AKILGTI  VGGA+ M +++GP +      P       S+ G +  L 
Sbjct:   121 LEKVNVKKIHSQAKILGTIVTVGGAMLMTVVKGPLIPLPWANPHDIHQDSSNTGVKQDLT 180

Query:   182 GCLFLFASAC-CWSLWLILQVPVSASYPDHLSLSAWMCFLATLQSATFAIFTEP-DPEAW 239
                 L A  C CW+ ++ LQ     SYP  LSL+A++CFL +++S   A+F E  +P AW
Sbjct:   181 KGASLIAIGCICWAGFINLQAITLKSYPVELSLTAYICFLGSIESTIVALFIERGNPSAW 240

Query:   240 NLHSSLEIFCCFFSGAIGSGVSFCVQAWCISKRGPLFSAMFNPLCTVIVTILAALLLHEE 299
              +H   ++    + G I SG+ + VQ   +  RGP+F   FNPL  VIV IL +++L E 
Sbjct:   241 AIHLDSKLLAAVYGGVICSGIGYYVQGVIMKTRGPVFVTAFNPLSMVIVAILGSIILAEV 300

Query:   300 IYTGR 304
             ++ GR
Sbjct:   301 MFLGR 305

GO:0003674 "molecular_function" evidence=ND

GO:0005576 "extracellular region" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0016020 "membrane" evidence=IEA;ISS

TAIR|locus:2092702 UMAMIT4 "AT3G18200" [Arabidopsis thaliana (taxid:3702)]

 Score = 513 (185.6 bits), Expect = 3.2e-49, P = 3.2e-49
 Identities = 107/296 (36%), Positives = 164/296 (55%)

Query:     8 KPAMAMLALQFSYAVVALSTRAALLQGMNPRVFVVYRQAIATLFMAPMAYLSSRKYKSSS 67
             K  +A++ LQF +A   + +R AL  G++  V+ VYR  +A L + P AY   +K +   
Sbjct:    34 KLVVALITLQFCFAGFHIVSRVALNIGVSKVVYPVYRNLLALLLIGPFAYFFEKKERPP- 92

Query:    68 MGLRSFSLIFFIALLGVTINQNTYFEGLYLXXXXXXXXXGNLIPAITFVMASIVGLEKID 127
             + +   +  FF+AL+G+T NQ  Y  GLY           N +PAITF+MA  + LE ID
Sbjct:    93 LTISLLAQFFFLALIGITANQGFYLLGLYYATPTFASAMQNSVPAITFIMACALRLEHID 152

Query:   128 LGSVRSVAKILGTIFCVGGAISMALLRGPKLLNTEFLPEKSFLFRSSGGENWLLGCLFLF 187
             L     VAK+LGT+  +GGA  + L RG  + +     +K  +  S    +  LG L+L 
Sbjct:   153 LVRKHGVAKVLGTLVSIGGATVITLYRGFPIFDQGLNMQKEEVVGSDNSHSLTLGWLYLM 212

Query:   188 ASACCWSLWLILQVPVSASYPDHLSLSAWMCFLATLQSATFAIFTEPDPEAWNLHSSLEI 247
                  W+ W++LQ PV   YP  L+L+++ CF   +Q    A+F E D   W + S  E+
Sbjct:   213 GHCLSWAGWMVLQAPVLKQYPAKLTLTSFTCFFGLIQFLVIALFVETDLNNWIIVSWEEL 272

Query:   248 FCCFFSGAIGSGVSFCVQAWCISKRGPLFSAMFNPLCTVIVTILAALLLHEEIYTG 303
             F   ++G I SG+   +Q WCI K GP+F A+F PL T++V  +A L+L +++Y+G
Sbjct:   273 FTILYAGIIASGLVVYLQTWCIYKSGPVFVAVFQPLQTLLVAAMAFLILGDQLYSG 328

GO:0003674 "molecular_function" evidence=ND

GO:0009507 "chloroplast" evidence=ISM

GO:0016020 "membrane" evidence=IEA

TAIR|locus:2058460 UMAMIT11 "Usually multiple acids move in and out Transporters 11" [Arabidopsis thaliana (taxid:3702)]

 Score = 495 (179.3 bits), Expect = 2.6e-47, P = 2.6e-47
 Identities = 107/296 (36%), Positives = 164/296 (55%)

Query:     8 KPAMAMLALQFSYAVVALSTRAALLQGMNPRVFVVYRQAIATLFMAPMAYLSSRKYKSSS 67
             KP  AM+ LQF YA + L T+  L +GM+  V V YR A AT  +AP A LS RK +S  
Sbjct:    10 KPYFAMVCLQFGYAGMNLVTKTVLDRGMSHYVLVAYRNAFATAAIAPFALLSERKVRSK- 68

Query:    68 MGLRSFSLIFFIALLGVTINQNTYFEGLYLXXXXXXXXXGNLIPAITFVMASIVGLEKID 127
             M    F  IF +ALLG  I+QN Y+ GL L          N++PAIT ++A++  +EK++
Sbjct:    69 MTFPIFMRIFLLALLGPVIDQNLYYIGLKLTSPTFSSAVSNIVPAITIILATLFRMEKVE 128

Query:   128 LGSVRSVAKILGTIFCVGGAISMALLRGPKLLNTEFLPEKSFLFRSSGGENWLLGCLFLF 187
             +  VR + K++GT+  V G+I M   +GP  +N  F         S    ++L   +FL 
Sbjct:   129 MRKVRCLVKVMGTLVTVVGSILMIFYKGP-FIN--FFRSHLTAASSPPTADYLKAAVFLL 185

Query:   188 ASACCWSLWLILQVPVSASYPDHLSLSAWMCFLATLQSATFAIFTEPDPEAWNLHSSLEI 247
              ++  W+ + +LQ      Y  HLS+S  +CF+ TLQS   A   E +P A N+   + +
Sbjct:   186 LASLSWASFFVLQAATLKKYSAHLSMSTMVCFMGTLQSLALAFVMEHNPSALNIGFDMNL 245

Query:   248 FCCFFSGAIGSGVSFCVQAWCISKRGPLFSAMFNPLCTVIVTILAALLLHEEIYTG 303
                 ++G + S +++ VQ   + ++GP+F   FNPL  VIV+I++  +L + IY G
Sbjct:   246 LASAYAGIMSSSIAYYVQGLMMQRKGPVFVTAFNPLIVVIVSIMSFFVLGQGIYLG 301

GO:0005576 "extracellular region" evidence=ISM

GO:0016020 "membrane" evidence=IEA;ISS

TAIR|locus:2176065 UMAMIT21 "AT5G64700" [Arabidopsis thaliana (taxid:3702)]

 Score = 476 (172.6 bits), Expect = 2.7e-45, P = 2.7e-45
 Identities = 107/305 (35%), Positives = 165/305 (54%)

Query:     8 KPAMAMLALQFSYAVVALSTRAALLQGMNPRVFVVYRQAIATLFMAPMAYLSSRKYKSSS 67
             KP + +  +Q  Y ++ L ++A    GMN  VFV YRQA AT+F+AP+A+   RK  +  
Sbjct:     7 KPYLMVTIIQVIYTIMFLISKAVFNGGMNTFVFVFYRQAFATIFLAPLAFFFERK-SAPP 65

Query:    68 MGLRSFSLIFFIALLGVTINQNTYFEGLYLXXXXXXXXXGNLIPAITFVMASIVGLEKID 127
             +   +F  IF ++L GVT++ +     L              +PAITF +A + G+E++ 
Sbjct:    66 LSFVTFIKIFMLSLFGVTLSLDLNGIALSYTSATLAAATTASLPAITFFLALLFGMERLK 125

Query:   128 LGSVRSVAKILGTIFCVGGAISMALLRGPKL---LNTEFL-----PEKSFLFRSSGGE-N 178
             + S++  AK++G   C+GG I +A+ +GP L   L   F      P ++     SGG  +
Sbjct:   126 VKSIQGTAKLVGITVCMGGVIILAIYKGPLLKLPLCPHFYHGQEHPHRNNPGHVSGGSTS 185

Query:   179 WLLGCLFLFASACCWSLWLILQVPVSASYPDHLSLSAWMCFLATLQSATFAIFTEPDPEA 238
             WL GC+ +  S   W LWL+LQ  V   YP  L  +   C L+++QS   AI  E D  A
Sbjct:   186 WLKGCVLMITSNILWGLWLVLQGRVLKVYPSKLYFTTLHCLLSSIQSFVIAIALERDISA 245

Query:   239 WNLHSSLEIFCCFFSGAIGSGVSFCVQAWCISKRGPLFSAMFNPLCTVIVTILAALLLHE 298
             W L  +L +    + G I +GV++ +Q+W I KRGP+F +MF PL  +   + +A+LL E
Sbjct:   246 WKLGWNLRLVAVIYCGFIVTGVAYYLQSWVIEKRGPVFLSMFTPLSLLFTLLSSAILLCE 305

Query:   299 EIYTG 303
              I  G
Sbjct:   306 IISLG 310

GO:0003674 "molecular_function" evidence=ND

GO:0005576 "extracellular region" evidence=ISM

GO:0016020 "membrane" evidence=IEA

TAIR|locus:2194864 SIAR1 "Siliques Are Red 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 474 (171.9 bits), Expect = 4.4e-45, P = 4.4e-45
 Identities = 102/304 (33%), Positives = 164/304 (53%)

Query:     3 SLRDYKPAMAMLALQFSYAVVALSTRAALLQGMNPRVFVVYRQAIATLFMAPMAYLSSRK 62
             S+   KP +A+++LQF YA + + T  +   GM+  V   YR  +AT+ MAP A +  RK
Sbjct:     5 SMEKIKPILAIISLQFGYAGMYIITMVSFKHGMDHWVLATYRHVVATVVMAPFALMFERK 64

Query:    63 YKSSSMGLRSFSLIFFIALLGVTINQNTYFEGLYLXXXXXXXXXGNLIPAITFVMASIVG 122
              +   M L  F  +  + +L   ++QN Y+ GL            N +PA+TF++A I  
Sbjct:    65 IRPK-MTLAIFWRLLALGILEPLMDQNLYYIGLKNTSASYTSAFTNALPAVTFILALIFR 123

Query:   123 LEKIDLGSVRSVAKILGTIFCVGGAISMALLRGPKLLNTEFLPEKSFLFRSSG---GENW 179
             LE ++   V SVAK++GT+  VGGA+ M L +GP +   +     SF   SS    G++W
Sbjct:   124 LETVNFRKVHSVAKVVGTVITVGGAMIMTLYKGPAIEIVK-AAHNSFHGGSSSTPTGQHW 182

Query:   180 LLGCLFLFASACCWSLWLILQVPVSASYPDHLSLSAWMCFLATLQSATFAIFTEPDPEAW 239
             +LG + +  S   W+ + ILQ      YP  LSL   +C + T+ +A  ++    DP AW
Sbjct:   183 VLGTIAIMGSISTWAAFFILQSYTLKVYPAELSLVTLICGIGTILNAIASLIMVRDPSAW 242

Query:   240 NLHSSLEIFCCFFSGAIGSGVSFCVQAWCISKRGPLFSAMFNPLCTVIVTILAALLLHEE 299
              +          +SG + SG+++ +Q+  I +RGP+F+  F+P+C +I   L AL+L E+
Sbjct:   243 KIGMDSGTLAAVYSGVVCSGIAYYIQSIVIKQRGPVFTTSFSPMCMIITAFLGALVLAEK 302

Query:   300 IYTG 303
             I+ G
Sbjct:   303 IHLG 306

GO:0005739 "mitochondrion" evidence=ISM

GO:0016020 "membrane" evidence=IEA;ISS

GO:0005515 "protein binding" evidence=IPI

GO:0005886 "plasma membrane" evidence=IDA

GO:0006865 "amino acid transport" evidence=IDA

GO:0015171 "amino acid transmembrane transporter activity" evidence=IDA

GO:0032973 "amino acid export" evidence=IDA

GO:0034639 "L-amino acid efflux transmembrane transporter activity" evidence=IDA

GO:0043090 "amino acid import" evidence=IDA

GO:0080144 "amino acid homeostasis" evidence=IMP

TAIR|locus:2031144 UMAMIT22 "Usually multiple acids move in and out Transporters 22" [Arabidopsis thaliana (taxid:3702)]

 Score = 474 (171.9 bits), Expect = 4.4e-45, P = 4.4e-45
 Identities = 99/303 (32%), Positives = 164/303 (54%)

Query:     4 LRDYKPAMAMLALQFSYAVVALSTRAALLQGMNPRVFVVYRQAIATLFMAPMAYLSSRKY 63
             + ++K  MAM+ +Q  YA + L ++ A+ QG NP VFV YRQA A L ++P A+      
Sbjct:     2 MMEHKANMAMVFVQIVYAGMPLLSKVAISQGTNPFVFVFYRQAFAALALSPFAFFLESS- 60

Query:    64 KSSSMGLRSFSLIFFIALLGVTINQNTYFEGLYLXXXXXXXXXGNLIPAITFVMASIVGL 123
             KSS +       IFFI+L G+T++ N Y+  +            N IP+ITFV+A +  L
Sbjct:    61 KSSPLSFILLLKIFFISLCGLTLSLNLYYVAIENTTATFAAATTNAIPSITFVLALLFRL 120

Query:   124 EKIDLGSVRSVAKILGTIFCVGGAISMALLRGPKLLN---TEFLPEKSFLFRSSGGENWL 180
             E + L     VAK+ G++  + GA+  A ++GP L+N   +  +P  +        +N +
Sbjct:   121 ETVTLKKSHGVAKVTGSMVGMLGALVFAFVKGPSLINHYNSSTIPNGTV----PSTKNSV 176

Query:   181 LGCLFLFASACCWSLWLILQVPVSASYPDHLSLSAWMCFLATLQSATFAIFTEPDPEAWN 240
              G + + A+  CW LW+I+Q  V   YP  L L A  C  + +QSA +A+    +P  W 
Sbjct:   177 KGSITMLAANTCWCLWIIMQSKVMKEYPAKLRLVALQCLFSCIQSAVWAVAVNRNPSVWK 236

Query:   241 LHSSLEIFCCFFSGAIGSGVSFCVQAWCISKRGPLFSAMFNPLCTVIVTILAALLLHEEI 300
             +   L +    + G + +G+++ +Q W I K+GP+F+A++ PL  ++  I+++ L  E  
Sbjct:   237 IEFGLPLLSMAYCGIMVTGLTYWLQVWAIEKKGPVFTALYTPLALILTCIVSSFLFKETF 296

Query:   301 YTG 303
             Y G
Sbjct:   297 YLG 299

GO:0009507 "chloroplast" evidence=ISM

GO:0016020 "membrane" evidence=IEA;ISS

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q9M0B8	WTR37_ARATH	No assigned EC number	0.6127	0.9638	0.7855	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	304
PLN00411	358	PLN00411, PLN00411, nodulin MtN21 family protein;	7e-31
pfam00892	126	pfam00892, EamA, EamA-like transporter family	5e-04
COG0697	292	COG0697, RhaT, Permeases of the drug/metabolite tr	0.003

>gnl|CDD|177805 PLN00411, PLN00411, nodulin MtN21 family protein; Provisional

 Score =  118 bits (297), Expect = 7e-31
 Identities = 86/301 (28%), Positives = 156/301 (51%), Gaps = 15/301 (4%)

Query: 12  AMLALQFSYAVVALST--RAALLQGMNPRVFVVYRQAIATLFMAPMAYLSSRKYKSSSMG 69
           AMLA + S  VV +ST  + A  +G+N   F+ Y   +A+L + P  + ++R   S S+ 
Sbjct: 17  AMLATETS--VVGISTLFKVATSKGLNIYPFLGYSYLLASLLLLPSLFFTNR---SRSLP 71

Query: 70  LRSFSLIFFIALLGV--TINQNTYFEGLYLASSSMASAMGNLIPAITFVMASIVGLEKID 127
             S S++  I LLG   ++   T + G+  ++ ++ASA+ N+ PA+TF++A I  +EK+ 
Sbjct: 72  PLSVSILSKIGLLGFLGSMYVITGYIGIEYSNPTLASAISNITPALTFILAIIFRMEKVS 131

Query: 128 LGSVRSVAKILGTIFCVGGAISMALLRGPKLLNTEFLPEKSFLFR----SSGGENWLLGC 183
                SVAK++GTI  + GA+ +    GP++      P  +F       SS   +WL+G 
Sbjct: 132 FKERSSVAKVMGTILSLIGALVVIFYHGPRVFVASSPPYLNFRQLSPPLSSSNSDWLIGG 191

Query: 184 LFLFASACCWSLWLILQVPVSASYPDHLSLSAWMCFLATLQSATFAIFTEP-DPEAWNLH 242
             L       S+  ILQ  + + YP   ++S       ++ ++   +  E  +P  W +H
Sbjct: 192 ALLTIQGIFVSVSFILQAHIMSEYPAAFTVSFLYTVCVSIVTSMIGLVVEKNNPSVWIIH 251

Query: 243 SSLEIFCCFFSGAIGSGVSFCVQAWCISKRGPLFSAMFNPLCTVIVTILAALLLHEEIYT 302
             + +     + AI + V + + +W +  +GPL+ A+F PL  +I  ++ A+ L++ +Y 
Sbjct: 252 FDITLI-TIVTMAIITSVYYVIHSWTVRHKGPLYLAIFKPLSILIAVVMGAIFLNDSLYL 310

Query: 303 G 303
           G
Sbjct: 311 G 311

Length = 358

>gnl|CDD|216178 pfam00892, EamA, EamA-like transporter family

 Score = 39.1 bits (92), Expect = 5e-04
 Identities = 28/118 (23%), Positives = 58/118 (49%), Gaps = 8/118 (6%)

Query: 31  LLQGMNPRVFVVYRQAIATLFMAPMAYLSSRKYKSSSMGLRSFSLIFFIALLGVTINQNT 90
           LL+ ++P  F  YR  IA + +  + +L   +   + + L++   + ++ L G  +    
Sbjct: 13  LLERISPLTFTAYRFLIAGILLILLLFL--LRKPFALLSLKAILALLYLGLFGTALGYLL 70

Query: 91  YFEGLYLASSSMASAMGNLIPAITFVMASIVGLEKIDLGSVRSVAKILGTIFCVGGAI 148
           YF  L   S+S AS + +L P  T +++ ++  EK+ L       ++LG +  + G +
Sbjct: 71  YFYALKYVSASNASVITSLSPVFTLILSVLLLGEKLTL------KQLLGIVLILLGVL 122

This family includes many hypothetical membrane proteins of unknown function. Many of the proteins contain two copies of the aligned region. The family used to be known as DUF6. Length = 126

>gnl|CDD|223769 COG0697, RhaT, Permeases of the drug/metabolite transporter (DMT) superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / General function prediction only]

 Score = 38.3 bits (89), Expect = 0.003
 Identities = 63/291 (21%), Positives = 111/291 (38%), Gaps = 32/291 (10%)

Query: 10  AMAMLALQFSYAVVALSTRAALLQGMNPRVFVVYRQAIATLFMAPMAYLSSRKYKSSSMG 69
            +A+L     + +  ++ + A+            R  IA L + P+  L  R  +     
Sbjct: 9   LLALLLWGLLWGLSFIALKLAVESLDPFLFAAALRFLIAALLLLPLLLLEPRGLRP---A 65

Query: 70  LRSFSLIFFIALLGVTINQNTYFEGLYLASSSMASAMGNLIPAITFVMASIVGLEKIDLG 129
           LR + L+  +ALLG+ +     F  L   S+S+AS +  L+P  T ++A ++      LG
Sbjct: 66  LRPWLLLLLLALLGLALPFLLLFLALKYTSASVASLIIGLLPLFTALLAVLLL-----LG 120

Query: 130 SVRSVAKILGTIFCVGGAISMALLRGPKLLNTEFLPEKSFLFRSSGGENWLLGCLFLFAS 189
              S+ +ILG +  + G + +                   L    GG   LLG L   A+
Sbjct: 121 ERLSLLQILGILLALAGVLLIL------------------LGGGGGGILSLLGLLLALAA 162

Query: 190 ACCWSLWLILQVPVSASYPDHLSLSAWMCFLATLQSATFAIFTEPDPEAWNLHSSLEIFC 249
           A  W+L+  L   +S   P        +  L  L  A   +             S     
Sbjct: 163 ALLWALYTALVKRLSRLGP------VTLALLLQLLLALLLLLLFFLSGFGAPILSRAWLL 216

Query: 250 CFFSGAIGSGVSFCVQAWCISKRGPLFSAMFNPLCTVIVTILAALLLHEEI 300
             + G   +G+++ +  + +   G    A+ + L  V   +L  LLL E +
Sbjct: 217 LLYLGVFSTGLAYLLWYYALRLLGASLVALLSLLEPVFAALLGVLLLGEPL 267

Length = 292

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	304
PLN00411	358	nodulin MtN21 family protein; Provisional	100.0
PRK11272	292	putative DMT superfamily transporter inner membran	100.0
TIGR00950	260	2A78 Carboxylate/Amino Acid/Amine Transporter.	99.97
PRK11453	299	O-acetylserine/cysteine export protein; Provisiona	99.97
PRK15430	296	putative chloramphenical resistance permease RarD;	99.97
PRK11689	295	aromatic amino acid exporter; Provisional	99.97
PRK10532	293	threonine and homoserine efflux system; Provisiona	99.96
TIGR00688	256	rarD rarD protein. This uncharacterized protein is	99.96
TIGR03340	281	phn_DUF6 phosphonate utilization associated putati	99.95
TIGR00817	302	tpt Tpt phosphate/phosphoenolpyruvate translocator	99.94
PTZ00343	350	triose or hexose phosphate/phosphate translocator;	99.92
COG0697	292	RhaT Permeases of the drug/metabolite transporter	99.91
PF06027	334	DUF914: Eukaryotic protein of unknown function (DU	99.88
COG2962	293	RarD Predicted permeases [General function predict	99.86
KOG4510	346	consensus Permease of the drug/metabolite transpor	99.86
TIGR00776	290	RhaT RhaT L-rhamnose-proton symporter family prote	99.85
COG5006	292	rhtA Threonine/homoserine efflux transporter [Amin	99.85
COG2510	140	Predicted membrane protein [Function unknown]	99.69
KOG2765	416	consensus Predicted membrane protein [Function unk	99.63
PF00892	126	EamA: EamA-like transporter family; InterPro: IPR0	99.61
PF08449	303	UAA: UAA transporter family; InterPro: IPR013657 T	99.59
TIGR00950	260	2A78 Carboxylate/Amino Acid/Amine Transporter.	99.39
PF04142	244	Nuc_sug_transp: Nucleotide-sugar transporter; Inte	99.29
PF13536	113	EmrE: Multidrug resistance efflux transporter	99.24
PRK10532	293	threonine and homoserine efflux system; Provisiona	99.22
KOG1441	316	consensus Glucose-6-phosphate/phosphate and phosph	99.21
PRK11272	292	putative DMT superfamily transporter inner membran	99.19
KOG2766	336	consensus Predicted membrane protein [Function unk	99.16
COG2510	140	Predicted membrane protein [Function unknown]	99.15
PLN00411	358	nodulin MtN21 family protein; Provisional	99.1
PF00892	126	EamA: EamA-like transporter family; InterPro: IPR0	99.07
PRK11689	295	aromatic amino acid exporter; Provisional	99.07
KOG1444	314	consensus Nucleotide-sugar transporter VRG4/SQV-7	99.04
PRK11453	299	O-acetylserine/cysteine export protein; Provisiona	98.98
KOG2234	345	consensus Predicted UDP-galactose transporter [Car	98.97
TIGR03340	281	phn_DUF6 phosphonate utilization associated putati	98.94
KOG1580	337	consensus UDP-galactose transporter related protei	98.93
TIGR00817	302	tpt Tpt phosphate/phosphoenolpyruvate translocator	98.88
KOG1443	349	consensus Predicted integral membrane protein [Fun	98.87
PF06800	269	Sugar_transport: Sugar transport protein; InterPro	98.87
PF03151	153	TPT: Triose-phosphate Transporter family; InterPro	98.79
KOG1581	327	consensus UDP-galactose transporter related protei	98.79
PTZ00343	350	triose or hexose phosphate/phosphate translocator;	98.69
COG0697	292	RhaT Permeases of the drug/metabolite transporter	98.67
TIGR00776	290	RhaT RhaT L-rhamnose-proton symporter family prote	98.66
PRK15430	296	putative chloramphenical resistance permease RarD;	98.62
PRK13499	345	rhamnose-proton symporter; Provisional	98.59
PRK15051	111	4-amino-4-deoxy-L-arabinose-phosphoundecaprenol fl	98.54
PF06027	334	DUF914: Eukaryotic protein of unknown function (DU	98.53
TIGR00688	256	rarD rarD protein. This uncharacterized protein is	98.46
PRK02971	129	4-amino-4-deoxy-L-arabinose-phosphoundecaprenol fl	98.43
KOG4314	290	consensus Predicted carbohydrate/phosphate translo	98.43
COG5006	292	rhtA Threonine/homoserine efflux transporter [Amin	98.39
PF05653	300	Mg_trans_NIPA: Magnesium transporter NIPA; InterPr	98.36
KOG1442	347	consensus GDP-fucose transporter [Carbohydrate tra	98.23
COG5070	309	VRG4 Nucleotide-sugar transporter [Carbohydrate tr	98.22
KOG3912	372	consensus Predicted integral membrane protein [Gen	98.2
TIGR00803	222	nst UDP-galactose transporter. NSTs generally appe	98.06
PF03151	153	TPT: Triose-phosphate Transporter family; InterPro	98.01
COG4975	288	GlcU Putative glucose uptake permease [Carbohydrat	97.85
PF06800	269	Sugar_transport: Sugar transport protein; InterPro	97.81
PF08449	303	UAA: UAA transporter family; InterPro: IPR013657 T	97.73
PF04657	138	DUF606: Protein of unknown function, DUF606; Inter	97.62
COG2962	293	RarD Predicted permeases [General function predict	97.48
PRK13499	345	rhamnose-proton symporter; Provisional	97.44
KOG2922	335	consensus Uncharacterized conserved protein [Funct	97.4
KOG1582	367	consensus UDP-galactose transporter related protei	97.39
PF13536	113	EmrE: Multidrug resistance efflux transporter	97.31
PRK10452	120	multidrug efflux system protein MdtJ; Provisional	97.3
PRK02971	129	4-amino-4-deoxy-L-arabinose-phosphoundecaprenol fl	97.26
KOG1441	316	consensus Glucose-6-phosphate/phosphate and phosph	97.26
PRK09541	110	emrE multidrug efflux protein; Reviewed	97.24
PRK10650	109	multidrug efflux system protein MdtI; Provisional	97.19
KOG2765	416	consensus Predicted membrane protein [Function unk	96.97
PF10639	113	UPF0546: Uncharacterised protein family UPF0546; I	96.97
PRK11431	105	multidrug efflux system protein; Provisional	96.91
COG2076	106	EmrE Membrane transporters of cations and cationic	96.9
KOG1583	330	consensus UDP-N-acetylglucosamine transporter [Car	96.86
KOG4510	346	consensus Permease of the drug/metabolite transpor	96.78
PRK15051	111	4-amino-4-deoxy-L-arabinose-phosphoundecaprenol fl	96.69
PF00893	93	Multi_Drug_Res: Small Multidrug Resistance protein	96.6
PF07857	254	DUF1632: CEO family (DUF1632); InterPro: IPR012435	96.49
COG3238	150	Uncharacterized protein conserved in bacteria [Fun	96.13
KOG1581	327	consensus UDP-galactose transporter related protei	95.78
TIGR00803	222	nst UDP-galactose transporter. NSTs generally appe	95.64
KOG1580	337	consensus UDP-galactose transporter related protei	94.82
KOG1444	314	consensus Nucleotide-sugar transporter VRG4/SQV-7	93.61
PF05653	300	Mg_trans_NIPA: Magnesium transporter NIPA; InterPr	92.42
PF04142	244	Nuc_sug_transp: Nucleotide-sugar transporter; Inte	92.41
PF04657	138	DUF606: Protein of unknown function, DUF606; Inter	92.17
PF06379	344	RhaT: L-rhamnose-proton symport protein (RhaT); In	91.41
PF00893	93	Multi_Drug_Res: Small Multidrug Resistance protein	91.41
KOG1443	349	consensus Predicted integral membrane protein [Fun	91.09
KOG2766	336	consensus Predicted membrane protein [Function unk	87.8
PRK10650	109	multidrug efflux system protein MdtI; Provisional	87.35
COG5070	309	VRG4 Nucleotide-sugar transporter [Carbohydrate tr	86.01
COG3238	150	Uncharacterized protein conserved in bacteria [Fun	84.75
COG4975	288	GlcU Putative glucose uptake permease [Carbohydrat	84.27
KOG1582	367	consensus UDP-galactose transporter related protei	83.25
PRK09541	110	emrE multidrug efflux protein; Reviewed	82.39
PRK10452	120	multidrug efflux system protein MdtJ; Provisional	80.91

>PLN00411 nodulin MtN21 family protein; Provisional

Probab=100.00  E-value=2.1e-34  Score=262.91  Aligned_cols=292  Identities=25%  Similarity=0.470  Sum_probs=231.6

Q ss_pred             ccchHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHhhhccccCCCCCHHHHHHHHHHHHHH
Q 022016            4 LRDYKPAMAMLALQFSYAVVALSTRAALLQGMNPRVFVVYRQAIATLFMAPMAYLSSRKYKSSSMGLRSFSLIFFIALLG   83 (304)
Q Consensus         4 ~~~~~g~~~~l~~~~~~~~~~~~~k~~~~~~~~p~~~~~~R~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~   83 (304)
                      +++.++++.++...+.++...++.|...+.|++|..+.++|+.+++++++++..+++|+++.++.+++++..+.+.|+++
T Consensus         9 ~~~~~~~~~~~~~q~~~~~~~~~~k~a~~~G~~~~~~~~~R~~iA~l~Ll~~~~~~~~~~~~~~~~~~~~~~l~l~g~~g   88 (358)
T PLN00411          9 RREAVFLTAMLATETSVVGISTLFKVATSKGLNIYPFLGYSYLLASLLLLPSLFFTNRSRSLPPLSVSILSKIGLLGFLG   88 (358)
T ss_pred             hhccchHHHHHHHHHHHHHHHHHHHHHHHCCCCccHHHHHHHHHHHHHHHHHHHHHHHhcccCcchHHHHHHHHHHHHHH
Confidence            45778999999999999999999999999999999999999999999999987765442221445688889999999998


Q ss_pred             HHHHHHHHHHHhhccccchhhhhcchhHHHHHHHHHHH------hcccccccccccchhhhHHHHHHHhHhhhhhccCCc
Q 022016           84 VTINQNTYFEGLYLASSSMASAMGNLIPAITFVMASIV------GLEKIDLGSVRSVAKILGTIFCVGGAISMALLRGPK  157 (304)
Q Consensus        84 ~~~~~~~~~~al~~~~~~~a~~i~~~~Pi~~~lla~l~------~~er~~~~~~~~~~~~~g~~l~~~G~~li~~~~~~~  157 (304)
                       +..+.+++.|++++++++++++.++.|+++.++++++      +|||++++      +++|+++++.|+.++...+++.
T Consensus        89 -~~~~~~~~~gl~~tsa~~asll~~~~P~~~~lla~~~~~e~~~~~er~~~~------~~~G~~l~~~Gv~ll~~~~g~~  161 (358)
T PLN00411         89 -SMYVITGYIGIEYSNPTLASAISNITPALTFILAIIFRMEKVSFKERSSVA------KVMGTILSLIGALVVIFYHGPR  161 (358)
T ss_pred             -HHHHHHHHHHHhhccHHHHHHHHHhhHHHHHHHHHHHHhchhhhcccccHH------HHHHHHHHHHHHHHHHHccCcc
Confidence             7788899999999999999999999999999999999      58888888      9999999999999988533332


Q ss_pred             cccccCC---cccccc-ccCCCCCchHHHHHHHHHHHHHHHHHHHhHHHHhhcCCCchhHHHHHHHHHHHHHHHHHHhcC
Q 022016          158 LLNTEFL---PEKSFL-FRSSGGENWLLGCLFLFASACCWSLWLILQVPVSASYPDHLSLSAWMCFLATLQSATFAIFTE  233 (304)
Q Consensus       158 ~~~~~~~---~~~~~~-~~~~~~~~~~~G~~~~l~a~~~~a~~~~~~k~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~  233 (304)
                      ....+++   +..+.. .+..+..+...|+++++.++++||+|.+++||..+++|+....+.+++.++.+...+.+...+
T Consensus       162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~lG~~l~l~aa~~wa~~~il~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~l~~~  241 (358)
T PLN00411        162 VFVASSPPYLNFRQLSPPLSSSNSDWLIGGALLTIQGIFVSVSFILQAHIMSEYPAAFTVSFLYTVCVSIVTSMIGLVVE  241 (358)
T ss_pred             cccccccccccccccccccCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHhHHHHHHHHHHHHHHHHHHHHHc
Confidence            1100000   000000 001223445779999999999999999999999988875567777888887777776666544


Q ss_pred             CC-cccccccCcchHHHHHHHHhhccchheeeeeeeecccCceeeeeccchHHHHHHHHHHHHhCCccccC
Q 022016          234 PD-PEAWNLHSSLEIFCCFFSGAIGSGVSFCVQAWCISKRGPLFSAMFNPLCTVIVTILAALLLHEEIYTG  303 (304)
Q Consensus       234 ~~-~~~~~~~~~~~~~~~~~~g~~~~~~~~~l~~~~~~~~~a~~~s~~~~l~pv~a~l~~~~~~~e~~~~~  303 (304)
                      ++ ...|..........++|.+++ +.++|.+|++++++.|+++++.+.+++|+++++++++++||++++.
T Consensus       242 ~~~~~~~~~~~~~~~~~i~y~~i~-t~lay~lw~~~v~~~ga~~as~~~~L~PV~a~llg~l~LgE~lt~~  311 (358)
T PLN00411        242 KNNPSVWIIHFDITLITIVTMAII-TSVYYVIHSWTVRHKGPLYLAIFKPLSILIAVVMGAIFLNDSLYLG  311 (358)
T ss_pred             cCCcccceeccchHHHHHHHHHHH-HHHHHHHHHHHHhccCchHHHHHHhHHHHHHHHHHHHHhCCCCcHH
Confidence            32 233322222244557788875 5689999999999999999999999999999999999999999864

>PRK11272 putative DMT superfamily transporter inner membrane protein; Provisional

Probab=100.00  E-value=1.2e-31  Score=240.15  Aligned_cols=266  Identities=13%  Similarity=0.125  Sum_probs=219.6

Q ss_pred             CCCccchHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHhhhccccCCCCCHHHHHHHHHHH
Q 022016            1 MSSLRDYKPAMAMLALQFSYAVVALSTRAALLQGMNPRVFVVYRQAIATLFMAPMAYLSSRKYKSSSMGLRSFSLIFFIA   80 (304)
Q Consensus         1 m~~~~~~~g~~~~l~~~~~~~~~~~~~k~~~~~~~~p~~~~~~R~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g   80 (304)
                      |..++...-....+...++||.+++.+|...++ +||.+++++|+.+++++++++...+++ +.   .++++++.....|
T Consensus         1 ~~~~~~~~~~~~~~~~~~iWg~~~~~~K~~~~~-~~p~~~~~~R~~~a~l~ll~~~~~~~~-~~---~~~~~~~~~~~~g   75 (292)
T PRK11272          1 MRFRQLLPLFGALFALYIIWGSTYLVIRIGVES-WPPLMMAGVRFLIAGILLLAFLLLRGH-PL---PTLRQWLNAALIG   75 (292)
T ss_pred             CchHHHHHHHHHHHHHHHHHhhHHHHHHHHhcc-CCHHHHHHHHHHHHHHHHHHHHHHhCC-CC---CcHHHHHHHHHHH
Confidence            344444444667888999999999999999875 999999999999999998887654322 22   2577888888889


Q ss_pred             HHHHHHHHHHHHHHh-hccccchhhhhcchhHHHHHHHHHHHhcccccccccccchhhhHHHHHHHhHhhhhhccCCccc
Q 022016           81 LLGVTINQNTYFEGL-YLASSSMASAMGNLIPAITFVMASIVGLEKIDLGSVRSVAKILGTIFCVGGAISMALLRGPKLL  159 (304)
Q Consensus        81 ~~~~~~~~~~~~~al-~~~~~~~a~~i~~~~Pi~~~lla~l~~~er~~~~~~~~~~~~~g~~l~~~G~~li~~~~~~~~~  159 (304)
                      .++...++.+++.+. +++++++++++.++.|+++.+++++ +|||++++      ++.|+++++.|+.++..   ++  
T Consensus        76 ~~~~~~~~~~~~~~~~~~~~a~~a~~l~~~~Pl~~~lla~~-~~e~~~~~------~~~~~~la~~Gv~ll~~---~~--  143 (292)
T PRK11272         76 LLLLAVGNGMVTVAEHQNVPSGIAAVVVATVPLFTLCFSRL-FGIRTRKL------EWLGIAIGLAGIVLLNS---GG--  143 (292)
T ss_pred             HHHHHHHHHHHHHHHHccCcHHHHHHHHHHHHHHHHHHHHH-hcccCchh------HHHHHHHHHHhHHHHhc---Cc--
Confidence            888778888999999 9999999999999999999999986 69999999      99999999999998862   10  


Q ss_pred             cccCCccccccccCCCCCchHHHHHHHHHHHHHHHHHHHhHHHHhhcCCCchhHHHHHHHHHHHHHHHHHHhcCCCcccc
Q 022016          160 NTEFLPEKSFLFRSSGGENWLLGCLFLFASACCWSLWLILQVPVSASYPDHLSLSAWMCFLATLQSATFAIFTEPDPEAW  239 (304)
Q Consensus       160 ~~~~~~~~~~~~~~~~~~~~~~G~~~~l~a~~~~a~~~~~~k~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~  239 (304)
                                     ..+....|+++++.++++||.|.+..||..++  ++...+.+++.++++.+.+.....+.+..  
T Consensus       144 ---------------~~~~~~~G~l~~l~a~~~~a~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--  204 (292)
T PRK11272        144 ---------------NLSGNPWGAILILIASASWAFGSVWSSRLPLP--VGMMAGAAEMLAAGVVLLIASLLSGERLT--  204 (292)
T ss_pred             ---------------ccccchHHHHHHHHHHHHHHHHHHHHHhcCCC--cchHHHHHHHHHHHHHHHHHHHHcCCccc--
Confidence                           11233579999999999999999999997543  35667788888888888777664432221  


Q ss_pred             cccCcchHHHHHHHHhhccchheeeeeeeecccCceeeeeccchHHHHHHHHHHHHhCCcccc
Q 022016          240 NLHSSLEIFCCFFSGAIGSGVSFCVQAWCISKRGPLFSAMFNPLCTVIVTILAALLLHEEIYT  302 (304)
Q Consensus       240 ~~~~~~~~~~~~~~g~~~~~~~~~l~~~~~~~~~a~~~s~~~~l~pv~a~l~~~~~~~e~~~~  302 (304)
                      ...+...|..+++.+++++.+++.+|++++|+.++++++.+.++||+++.+++++++||+++.
T Consensus       205 ~~~~~~~~~~i~~l~i~~s~~~~~l~~~~~~~~~~~~~s~~~~l~Pi~a~i~~~~~l~E~~t~  267 (292)
T PRK11272        205 ALPTLSGFLALGYLAVFGSIIAISAYMYLLRNVRPALATSYAYVNPVVAVLLGTGLGGETLSP  267 (292)
T ss_pred             ccCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHcCCCCcH
Confidence            112345788999999999999999999999999999999999999999999999999999985

>TIGR00950 2A78 Carboxylate/Amino Acid/Amine Transporter

Probab=99.97  E-value=3.8e-30  Score=226.44  Aligned_cols=245  Identities=18%  Similarity=0.245  Sum_probs=209.3

Q ss_pred             HHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHhhhccccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhhccc
Q 022016           20 YAVVALSTRAALLQGMNPRVFVVYRQAIATLFMAPMAYLSSRKYKSSSMGLRSFSLIFFIALLGVTINQNTYFEGLYLAS   99 (304)
Q Consensus        20 ~~~~~~~~k~~~~~~~~p~~~~~~R~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~al~~~~   99 (304)
                      ||.+++..|...+++.|+.+..++|...+.+.+.+....  +  .    +++++++....|.++.++++.+++.|+++++
T Consensus         1 Wg~~~~~~k~~~~~~~~~~~~~~~r~~~~~l~l~~~~~~--~--~----~~~~~~~~~~~~~~~~~l~~~~~~~a~~~~~   72 (260)
T TIGR00950         1 WGTTGVVIGQYLEGQVPLYFAVFRRLIFALLLLLPLLRR--R--P----PLKRLLRLLLLGALQIGVFYVLYFVAVKRLP   72 (260)
T ss_pred             CcchHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHh--c--c----CHhHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence            899999999998777999999999999998888776432  2  2    3567778888999988999999999999999


Q ss_pred             cchhhhhcchhHHHHHHHHHHHhcccccccccccchhhhHHHHHHHhHhhhhhccCCccccccCCccccccccCCCCCch
Q 022016          100 SSMASAMGNLIPAITFVMASIVGLEKIDLGSVRSVAKILGTIFCVGGAISMALLRGPKLLNTEFLPEKSFLFRSSGGENW  179 (304)
Q Consensus       100 ~~~a~~i~~~~Pi~~~lla~l~~~er~~~~~~~~~~~~~g~~l~~~G~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  179 (304)
                      +++++++.++.|+++.+++++++|||++++      ++.|+++++.|+.++..   +                 ++.+.+
T Consensus        73 ~~~~~ii~~~~P~~~~~~~~l~~~e~~~~~------~~~gi~i~~~Gv~li~~---~-----------------~~~~~~  126 (260)
T TIGR00950        73 VGEAALLLYLAPLYVTLLSDLMGKERPRKL------VLLAAVLGLAGAVLLLS---D-----------------GNLSIN  126 (260)
T ss_pred             hhhhHHHHhhhHHHHHHHHHHHccCCCcHH------HHHHHHHHHHhHHhhcc---C-----------------Cccccc
Confidence            999999999999999999999999999999      99999999999999872   2                 112345


Q ss_pred             HHHHHHHHHHHHHHHHHHHhHHHHhhcCC-CchhHHHHHHHHHHHHHHHHHHhcCCCcccccccCcchHHHHHHHHhhcc
Q 022016          180 LLGCLFLFASACCWSLWLILQVPVSASYP-DHLSLSAWMCFLATLQSATFAIFTEPDPEAWNLHSSLEIFCCFFSGAIGS  258 (304)
Q Consensus       180 ~~G~~~~l~a~~~~a~~~~~~k~~~~~~~-~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~  258 (304)
                      ..|+.+++.++++|+.|.+..|+..++.+ ++.....+++.++.+.+.+.....+++. ..   +..++..+++.+++++
T Consensus       127 ~~G~~~~l~a~~~~a~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~-~~---~~~~~~~~~~~~~~~~  202 (260)
T TIGR00950       127 PAGLLLGLGSGISFALGTVLYKRLVKKEGPELLQFTGWVLLLGALLLLPFAWFLGPNP-QA---LSLQWGALLYLGLIGT  202 (260)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhHHhhcCCchHHHHHHHHHHHHHHHHHHHHHhcCCCC-Cc---chHHHHHHHHHHHHHH
Confidence            68999999999999999999999987763 2345555778888888888776443222 11   3457778899999999


Q ss_pred             chheeeeeeeecccCceeeeeccchHHHHHHHHHHHHhCCcccc
Q 022016          259 GVSFCVQAWCISKRGPLFSAMFNPLCTVIVTILAALLLHEEIYT  302 (304)
Q Consensus       259 ~~~~~l~~~~~~~~~a~~~s~~~~l~pv~a~l~~~~~~~e~~~~  302 (304)
                      .+++.+|++++|+.++++++.+.+++|+++.+++++++||+++.
T Consensus       203 ~~~~~~~~~a~~~~~~~~~s~~~~~~pv~~~ll~~~~~~E~~~~  246 (260)
T TIGR00950       203 ALAYFLWNKGLTLVDPSAASILALAEPLVALLLGLLILGETLSL  246 (260)
T ss_pred             HHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHHhCCCCCH
Confidence            99999999999999999999999999999999999999999985

>PRK11453 O-acetylserine/cysteine export protein; Provisional

Probab=99.97  E-value=7.7e-30  Score=229.14  Aligned_cols=258  Identities=15%  Similarity=0.180  Sum_probs=200.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHhhhccccCCCCCHHHHHHHHHHHHHHHHHHHH
Q 022016           10 AMAMLALQFSYAVVALSTRAALLQGMNPRVFVVYRQAIATLFMAPMAYLSSRKYKSSSMGLRSFSLIFFIALLGVTINQN   89 (304)
Q Consensus        10 ~~~~l~~~~~~~~~~~~~k~~~~~~~~p~~~~~~R~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~   89 (304)
                      .+..++++++||.+++++|...++ ++|..+.++|+.++++.++++.  +++ +    .+++   .....|.......+.
T Consensus         6 ~l~~l~~~~~Wg~~~~~~k~~~~~-~~p~~~~~~R~~~a~~~l~~~~--~~~-~----~~~~---~~~~~g~~~~~~~~~   74 (299)
T PRK11453          6 GVLALLVVVVWGLNFVVIKVGLHN-MPPLMLAGLRFMLVAFPAIFFV--ARP-K----VPLN---LLLGYGLTISFGQFA   74 (299)
T ss_pred             HHHHHHHHHHHhhhHHHHHHHHhc-CCHHHHHHHHHHHHHHHHHHHh--cCC-C----CchH---HHHHHHHHHHHHHHH
Confidence            466888999999999999999876 9999999999999887665543  111 1    1222   234456655456667


Q ss_pred             HHHHHhhc-cccchhhhhcchhHHHHHHHHHHHhcccccccccccchhhhHHHHHHHhHhhhhhccCCccccccCCcccc
Q 022016           90 TYFEGLYL-ASSSMASAMGNLIPAITFVMASIVGLEKIDLGSVRSVAKILGTIFCVGGAISMALLRGPKLLNTEFLPEKS  168 (304)
Q Consensus        90 ~~~~al~~-~~~~~a~~i~~~~Pi~~~lla~l~~~er~~~~~~~~~~~~~g~~l~~~G~~li~~~~~~~~~~~~~~~~~~  168 (304)
                      +++.++++ .++++++++.++.|+++.+++++++|||++++      +++|+++++.|+.++.   .++.          
T Consensus        75 ~~~~~~~~~~~a~~a~~l~~~~pi~~~ll~~~~l~e~~~~~------~~~~~~l~~~Gv~ll~---~~~~----------  135 (299)
T PRK11453         75 FLFCAINFGMPAGLASLVLQAQAFFTIVLGAFTFGERLQGK------QLAGIALAIFGVLVLI---EDSL----------  135 (299)
T ss_pred             HHHHHHHhcCCHHHHHHHHHhHHHHHHHHHHHHhcCcCcHH------HHHHHHHHHHhHHHhc---cccC----------
Confidence            88889988 58899999999999999999999999999999      9999999999999988   2210          


Q ss_pred             ccccCCCCCchHHHHHHHHHHHHHHHHHHHhHHHHhhcCCCc--hhHHHHHHHHHHHHHHHHHHhcCCCc---ccccccC
Q 022016          169 FLFRSSGGENWLLGCLFLFASACCWSLWLILQVPVSASYPDH--LSLSAWMCFLATLQSATFAIFTEPDP---EAWNLHS  243 (304)
Q Consensus       169 ~~~~~~~~~~~~~G~~~~l~a~~~~a~~~~~~k~~~~~~~~~--~~~~~~~~~~~~l~~~~~~~~~~~~~---~~~~~~~  243 (304)
                           ++.+....|+++++.++++|+.|.+++||..++.+++  .....+.+..+.+.....+...+++.   ..+...+
T Consensus       136 -----~~~~~~~~G~~l~l~aal~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  210 (299)
T PRK11453        136 -----NGQHVAMLGFMLTLAAAFSWACGNIFNKKIMSHSTRPAVMSLVVWSALIPIIPFFVASLILDGSATMIHSLVTID  210 (299)
T ss_pred             -----CCcchhHHHHHHHHHHHHHHHHHHHHHHHHhcccCccchhHHHHHHHHHHHHHHHHHHHHhcCchhhhhhhccCC
Confidence                 1122345799999999999999999999987655322  33345555555554444443333221   1122234


Q ss_pred             cchHHHHHHHHhhccchheeeeeeeecccCceeeeeccchHHHHHHHHHHHHhCCcccc
Q 022016          244 SLEIFCCFFSGAIGSGVSFCVQAWCISKRGPLFSAMFNPLCTVIVTILAALLLHEEIYT  302 (304)
Q Consensus       244 ~~~~~~~~~~g~~~~~~~~~l~~~~~~~~~a~~~s~~~~l~pv~a~l~~~~~~~e~~~~  302 (304)
                      ...|..++|.|+++++++|.+|++++++.++.+++.+.++||+++.+++++++||+++.
T Consensus       211 ~~~~~~l~~l~i~~t~~~~~l~~~~l~~~~a~~~s~~~~l~Pv~a~~~~~l~lgE~~~~  269 (299)
T PRK11453        211 MTTILSLMYLAFVATIVGYGIWGTLLGRYETWRVAPLSLLVPVVGLASAALLLDERLTG  269 (299)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHhCCCccH
Confidence            45799999999999999999999999999999999999999999999999999999985

>PRK15430 putative chloramphenical resistance permease RarD; Provisional

Probab=99.97  E-value=2.8e-30  Score=231.58  Aligned_cols=263  Identities=11%  Similarity=0.093  Sum_probs=197.4

Q ss_pred             CCCccchHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHhhhcccc-CCCC-CHHHHHHHHH
Q 022016            1 MSSLRDYKPAMAMLALQFSYAVVALSTRAALLQGMNPRVFVVYRQAIATLFMAPMAYLSSRKYK-SSSM-GLRSFSLIFF   78 (304)
Q Consensus         1 m~~~~~~~g~~~~l~~~~~~~~~~~~~k~~~~~~~~p~~~~~~R~~~a~~~l~~~~~~~~~~~~-~~~~-~~~~~~~~~~   78 (304)
                      |+|+++.+|++++++++++||.+++..|.. + +++|.++.++|..++.+++.++...+++++. .++. +++++. ...
T Consensus         1 ~~~~~~~~g~~~~l~a~~~wg~~~~~~k~~-~-~~~~~~~~~~R~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~   77 (296)
T PRK15430          1 MDAKQTRQGVLLALAAYFIWGIAPAYFKLI-Y-YVPADEILTHRVIWSFFFMVVLMSICRQWSYLKTLIQTPQKIF-MLA   77 (296)
T ss_pred             CCchhhhhHHHHHHHHHHHHHHHHHHHHHh-c-CCCHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHcCHHHHH-HHH
Confidence            778889999999999999999999999985 4 4999999999999999888776544322111 0111 334433 334


Q ss_pred             HHHHHHHHHHHHHHHHhhccccchhhhhcchhHHHHHHHHHHHhcccccccccccchhhhHHHHHHHhHhhhhhccCCcc
Q 022016           79 IALLGVTINQNTYFEGLYLASSSMASAMGNLIPAITFVMASIVGLEKIDLGSVRSVAKILGTIFCVGGAISMALLRGPKL  158 (304)
Q Consensus        79 ~g~~~~~~~~~~~~~al~~~~~~~a~~i~~~~Pi~~~lla~l~~~er~~~~~~~~~~~~~g~~l~~~G~~li~~~~~~~~  158 (304)
                      .+.++.+.++.++++|++++|+++++++.++.|+++.+++++++|||++++      ++.|+++++.|++++.   ++. 
T Consensus        78 ~~~~~~~~~~~~~~~a~~~~~~~~a~~l~~~~Pi~v~l~~~~~l~E~~~~~------~~~g~~l~~~Gv~li~---~~~-  147 (296)
T PRK15430         78 VSAVLIGGNWLLFIWAVNNHHMLEASLGYFINPLVNIVLGMIFLGERFRRM------QWLAVILAICGVLVQL---WTF-  147 (296)
T ss_pred             HHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHhcCCCcHH------HHHHHHHHHHHHHHHH---HHc-
Confidence            666667899999999999999999999999999999999999999999999      9999999999999987   221 


Q ss_pred             ccccCCccccccccCCCCCchHHHHHHHHHHHHHHHHHHHhHHHHhhcCC-CchhHHHHHHHHHHHHHHHHHHhcCCCcc
Q 022016          159 LNTEFLPEKSFLFRSSGGENWLLGCLFLFASACCWSLWLILQVPVSASYP-DHLSLSAWMCFLATLQSATFAIFTEPDPE  237 (304)
Q Consensus       159 ~~~~~~~~~~~~~~~~~~~~~~~G~~~~l~a~~~~a~~~~~~k~~~~~~~-~~~~~~~~~~~~~~l~~~~~~~~~~~~~~  237 (304)
                                       ++.    ..+++.++++||.|.+..||..++.. +....+.+.+.++.....+.   ......
T Consensus       148 -----------------~~~----~~~~l~aa~~~a~~~i~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~  203 (296)
T PRK15430        148 -----------------GSL----PIIALGLAFSFAFYGLVRKKIAVEAQTGMLIETMWLLPVAAIYLFAI---ADSSTS  203 (296)
T ss_pred             -----------------CCc----cHHHHHHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHHHHHHHHHH---ccCCcc
Confidence                             111    14678899999999999999754321 12333344444444332221   111111


Q ss_pred             cccccCcch-HHHHHHHHhhccchheeeeeeeecccCceeeeeccchHHHHHHHHHHHHhCCcccc
Q 022016          238 AWNLHSSLE-IFCCFFSGAIGSGVSFCVQAWCISKRGPLFSAMFNPLCTVIVTILAALLLHEEIYT  302 (304)
Q Consensus       238 ~~~~~~~~~-~~~~~~~g~~~~~~~~~l~~~~~~~~~a~~~s~~~~l~pv~a~l~~~~~~~e~~~~  302 (304)
                      .+. .++.. +....+.|+ .+.++|.+|++++++.++++++.+.+++|+++.+++++++||+++.
T Consensus       204 ~~~-~~~~~~~~~~~~~g~-~t~i~~~~~~~a~~~~~a~~~s~~~~l~Pv~a~~~g~l~l~E~~~~  267 (296)
T PRK15430        204 HMG-QNPMSLNLLLIAAGI-VTTVPLLCFTAAATRLRLSTLGFFQYIGPTLMFLLAVTFYGEKPGA  267 (296)
T ss_pred             ccc-CCcHHHHHHHHHHHH-HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHcCCCCH
Confidence            111 11222 333444454 6789999999999999999999999999999999999999999986

>PRK11689 aromatic amino acid exporter; Provisional

Probab=99.97  E-value=1.5e-29  Score=226.75  Aligned_cols=264  Identities=14%  Similarity=0.092  Sum_probs=197.5

Q ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHhhhccccCCCCCHHHHHHHHHHHHHHHH
Q 022016            6 DYKPAMAMLALQFSYAVVALSTRAALLQGMNPRVFVVYRQAIATLFMAPMAYLSSRKYKSSSMGLRSFSLIFFIALLGVT   85 (304)
Q Consensus         6 ~~~g~~~~l~~~~~~~~~~~~~k~~~~~~~~p~~~~~~R~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~   85 (304)
                      +.+++++++.+.++||.+++..|...++ ++|..+.++|+.+++++++++.   ++++. +   +++ +.....+.++.+
T Consensus         2 ~~~~~l~~l~a~~~Wg~~~~~~k~~~~~-~~P~~~~~~R~~~a~l~l~~~~---~~~~~-~---~~~-~~~~~~~~l~~~   72 (295)
T PRK11689          2 SQKATLIGLIAILLWSTMVGLIRGVSES-LGPVGGAAMIYSVSGLLLLLTV---GFPRL-R---QFP-KRYLLAGGLLFV   72 (295)
T ss_pred             CcchhHHHHHHHHHHHHHHHHHHHHHcc-CChHHHHHHHHHHHHHHHHHHc---ccccc-c---ccc-HHHHHHHhHHHH
Confidence            4567888999999999999999999976 9999999999999999887753   11111 1   112 223345555667


Q ss_pred             HHHHHHHHHhhc----cccchhhhhcchhHHHHHHHHHHHhcccccccccccchhhhHHHHHHHhHhhhhhccCCccccc
Q 022016           86 INQNTYFEGLYL----ASSSMASAMGNLIPAITFVMASIVGLEKIDLGSVRSVAKILGTIFCVGGAISMALLRGPKLLNT  161 (304)
Q Consensus        86 ~~~~~~~~al~~----~~~~~a~~i~~~~Pi~~~lla~l~~~er~~~~~~~~~~~~~g~~l~~~G~~li~~~~~~~~~~~  161 (304)
                      .+..+++.++++    .++++++++.++.|+++.+++++++|||++++      ++.|+++++.|++++.   .++....
T Consensus        73 ~~~~~~~~a~~~~~~~~~a~~a~~l~~~~Pi~~~ll~~~~~~e~~~~~------~~~g~~l~~~Gv~li~---~~~~~~~  143 (295)
T PRK11689         73 SYEICLALSLGYANTRRQAIEVGMVNYLWPSLTILFAVLFNGQKANWL------LIPGLLLALAGVAWVL---GGDNGLS  143 (295)
T ss_pred             HHHHHHHHHHHHhhccccchHHHHHHHHhHHHHHHHHHHHhcCCccHH------HHHHHHHHHHhHhhee---cCCccch
Confidence            778888877764    57788899999999999999999999999999      9999999999999988   2221000


Q ss_pred             cCCccccccccCCCCCchHHHHHHHHHHHHHHHHHHHhHHHHhhcCCCchhHHHHHHHHHHHHHHHHHHhcCCCcccccc
Q 022016          162 EFLPEKSFLFRSSGGENWLLGCLFLFASACCWSLWLILQVPVSASYPDHLSLSAWMCFLATLQSATFAIFTEPDPEAWNL  241 (304)
Q Consensus       162 ~~~~~~~~~~~~~~~~~~~~G~~~~l~a~~~~a~~~~~~k~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~  241 (304)
                          .++.   ..+.++...|+++++.+++|||.|.++.||..++. ++....  . ..+.+.+.+.....+ +.. . .
T Consensus       144 ----~~~~---~~~~~~~~~G~~~~l~aa~~~A~~~v~~k~~~~~~-~~~~~~--~-~~~~~~l~~~~~~~~-~~~-~-~  209 (295)
T PRK11689        144 ----LAEL---INNIASNPLSYGLAFIGAFIWAAYCNVTRKYARGK-NGITLF--F-ILTALALWIKYFLSP-QPA-M-V  209 (295)
T ss_pred             ----hhhh---hhccccChHHHHHHHHHHHHHHHHHHHHhhccCCC-CchhHH--H-HHHHHHHHHHHHHhc-Ccc-c-c
Confidence                0000   00112335799999999999999999999987776 465432  2 223333333333222 111 1 1


Q ss_pred             cCcchHHHHHHHHhhccchheeeeeeeecccCceeeeeccchHHHHHHHHHHHHhCCcccc
Q 022016          242 HSSLEIFCCFFSGAIGSGVSFCVQAWCISKRGPLFSAMFNPLCTVIVTILAALLLHEEIYT  302 (304)
Q Consensus       242 ~~~~~~~~~~~~g~~~~~~~~~l~~~~~~~~~a~~~s~~~~l~pv~a~l~~~~~~~e~~~~  302 (304)
                      .+...|..+++.++ +++++|.+|++++|+.++++++.+.+++|+++++++++++||+++.
T Consensus       210 ~~~~~~~~l~~~~~-~t~~~~~l~~~al~~~~a~~~s~~~~l~Pv~a~i~~~~~lgE~~~~  269 (295)
T PRK11689        210 FSLPAIIKLLLAAA-AMGFGYAAWNVGILHGNMTLLATASYFTPVLSAALAALLLSTPLSF  269 (295)
T ss_pred             CCHHHHHHHHHHHH-HHHHHHHHHHHHHHccCHHHHHHHHHhHHHHHHHHHHHHhCCCCcH
Confidence            23346777778774 7899999999999999999999999999999999999999999985

>PRK10532 threonine and homoserine efflux system; Provisional

Probab=99.96  E-value=2.1e-28  Score=219.14  Aligned_cols=257  Identities=11%  Similarity=0.114  Sum_probs=206.1

Q ss_pred             CccchHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHhhhccccCCCCCHHHHHHHHHHHHH
Q 022016            3 SLRDYKPAMAMLALQFSYAVVALSTRAALLQGMNPRVFVVYRQAIATLFMAPMAYLSSRKYKSSSMGLRSFSLIFFIALL   82 (304)
Q Consensus         3 ~~~~~~g~~~~l~~~~~~~~~~~~~k~~~~~~~~p~~~~~~R~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~   82 (304)
                      +.++.+++..++++.++|+.++.+.|++.++ +||.++.++|+.+++++++++...  ++   ++.++++++..+..|..
T Consensus         7 ~~~~~~~~~~~~la~~~~~~~~~~~K~~~~~-~~~~~~~~~R~~~a~l~l~~~~~~--~~---~~~~~~~~~~~~~~g~~   80 (293)
T PRK10532          7 KLPVWLPILLLLIAMASIQSGASLAKSLFPL-VGAPGVTALRLALGTLILIAIFKP--WR---LRFAKEQRLPLLFYGVS   80 (293)
T ss_pred             ccccchHHHHHHHHHHHHHhhHHHHHHHHHH-cCHHHHHHHHHHHHHHHHHHHHhH--Hh---ccCCHHHHHHHHHHHHH
Confidence            4457889999999999999999999999987 999999999999999988776422  21   22357888888888887


Q ss_pred             HHHHHHHHHHHHhhccccchhhhhcchhHHHHHHHHHHHhcccccccccccchhhhHHHHHHHhHhhhhhccCCcccccc
Q 022016           83 GVTINQNTYFEGLYLASSSMASAMGNLIPAITFVMASIVGLEKIDLGSVRSVAKILGTIFCVGGAISMALLRGPKLLNTE  162 (304)
Q Consensus        83 ~~~~~~~~~~~al~~~~~~~a~~i~~~~Pi~~~lla~l~~~er~~~~~~~~~~~~~g~~l~~~G~~li~~~~~~~~~~~~  162 (304)
                      . +..+.+++++++++|+++++++.++.|+++.+++.    ||.+        +..++.+++.|+.++.   .++.    
T Consensus        81 ~-~~~~~~~~~al~~~~~~~a~~l~~t~Pi~~~ll~~----~~~~--------~~~~~~i~~~Gv~li~---~~~~----  140 (293)
T PRK10532         81 L-GGMNYLFYLSIQTVPLGIAVALEFTGPLAVALFSS----RRPV--------DFVWVVLAVLGLWFLL---PLGQ----  140 (293)
T ss_pred             H-HHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHhc----CChH--------HHHHHHHHHHHHheee---ecCC----
Confidence            5 78889999999999999999999999999988863    5443        4456778899998877   2210    


Q ss_pred             CCccccccccCCCCCchHHHHHHHHHHHHHHHHHHHhHHHHhhcCCCchhHHHHHHHHHHHHHHHHHHhcCCCccccccc
Q 022016          163 FLPEKSFLFRSSGGENWLLGCLFLFASACCWSLWLILQVPVSASYPDHLSLSAWMCFLATLQSATFAIFTEPDPEAWNLH  242 (304)
Q Consensus       163 ~~~~~~~~~~~~~~~~~~~G~~~~l~a~~~~a~~~~~~k~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~  242 (304)
                                 +.++....|+++++.++++||.|.+..||..++. ++... .+...++++.+.+.....+++.    ..
T Consensus       141 -----------~~~~~~~~G~ll~l~aa~~~a~~~v~~r~~~~~~-~~~~~-~~~~~~~~~~l~~~~~~~~~~~----~~  203 (293)
T PRK10532        141 -----------DVSHVDLTGAALALGAGACWAIYILSGQRAGAEH-GPATV-AIGSLIAALIFVPIGALQAGEA----LW  203 (293)
T ss_pred             -----------CcccCChHHHHHHHHHHHHHHHHHHHHHHHhccC-CchHH-HHHHHHHHHHHHHHHHHccCcc----cC
Confidence                       1122345799999999999999999999998776 46665 4566677777776665332211    11


Q ss_pred             CcchHHHHHHHHhhccchheeeeeeeecccCceeeeeccchHHHHHHHHHHHHhCCcccc
Q 022016          243 SSLEIFCCFFSGAIGSGVSFCVQAWCISKRGPLFSAMFNPLCTVIVTILAALLLHEEIYT  302 (304)
Q Consensus       243 ~~~~~~~~~~~g~~~~~~~~~l~~~~~~~~~a~~~s~~~~l~pv~a~l~~~~~~~e~~~~  302 (304)
                      +...+...++.|++++.++|.+|++++++.++++++.+.++||+++.+++++++||+++.
T Consensus       204 ~~~~~~~~l~lgv~~t~~~~~l~~~~~~~~~a~~as~~~~l~Pv~a~l~~~l~lgE~~~~  263 (293)
T PRK10532        204 HWSILPLGLAVAILSTALPYSLEMIALTRLPTRTFGTLMSMEPALAAVSGMIFLGETLTL  263 (293)
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChhHHHHHHHhHHHHHHHHHHHHhCCCCcH
Confidence            223455668999999999999999999999999999999999999999999999999875

>TIGR00688 rarD rarD protein

Probab=99.96  E-value=4e-28  Score=213.32  Aligned_cols=249  Identities=12%  Similarity=0.074  Sum_probs=184.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHhhhccc----cCCCCCHHH-HHHHHHHHHH
Q 022016            8 KPAMAMLALQFSYAVVALSTRAALLQGMNPRVFVVYRQAIATLFMAPMAYLSSRKY----KSSSMGLRS-FSLIFFIALL   82 (304)
Q Consensus         8 ~g~~~~l~~~~~~~~~~~~~k~~~~~~~~p~~~~~~R~~~a~~~l~~~~~~~~~~~----~~~~~~~~~-~~~~~~~g~~   82 (304)
                      ||++++++++++||.++++.|. .++ +||.++.++|+.++++++.++...+++++    +.++.++++ +......|.+
T Consensus         2 ~g~~~~i~a~~~wg~~~~~~k~-~~~-~~~~~i~~~R~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~   79 (256)
T TIGR00688         2 KGIIVSLLASFLFGYMYYYSKL-LKP-LPATDILGHRMIWSFPFMLLSVTLFRQWAALIERLKRIQKRPLILSLLLCGLL   79 (256)
T ss_pred             CcHHHHHHHHHHHHHHHHHHHH-hcc-CCHHHHHHHHHHHHHHHHHHHHHHHcchHHHHHHHhCcccchHHHHHHHHHHH
Confidence            5889999999999999999998 444 99999999999999988877654433211    101122333 3345566666


Q ss_pred             HHHHHHHHHHHHhhccccchhhhhcchhHHHHHHHHHHHhcccccccccccchhhhHHHHHHHhHhhhhhccCCcccccc
Q 022016           83 GVTINQNTYFEGLYLASSSMASAMGNLIPAITFVMASIVGLEKIDLGSVRSVAKILGTIFCVGGAISMALLRGPKLLNTE  162 (304)
Q Consensus        83 ~~~~~~~~~~~al~~~~~~~a~~i~~~~Pi~~~lla~l~~~er~~~~~~~~~~~~~g~~l~~~G~~li~~~~~~~~~~~~  162 (304)
                       .+.++.++++|++++++++++++.++.|+++.+++++++|||++++      ++.++++++.|++++..   +      
T Consensus        80 -~~~~~~~~~~a~~~~~~~~a~~l~~~~Pi~~~lla~~~l~Ek~~~~------~~l~~~~~~~Gv~li~~---~------  143 (256)
T TIGR00688        80 -IGFNWWLFIWAVNNGSSLEVSLGYLINPLVMVALGRVFLKERISRF------QFIAVIIATLGVISNIV---L------  143 (256)
T ss_pred             -HHHHHHHHHHHHHcchHHHHHHHHHHHHHHHHHHHHHHHhcCCCHH------HHHHHHHHHHHHHHHHH---H------
Confidence             4899999999999999999999999999999999999999999999      99999999999998872   1      


Q ss_pred             CCccccccccCCCCCchHHHHHHHHHHHHHHHHHHHhHHHHhhcCCCchhHHHHHHHHHHHHHHHHHHhcCCCccccccc
Q 022016          163 FLPEKSFLFRSSGGENWLLGCLFLFASACCWSLWLILQVPVSASYPDHLSLSAWMCFLATLQSATFAIFTEPDPEAWNLH  242 (304)
Q Consensus       163 ~~~~~~~~~~~~~~~~~~~G~~~~l~a~~~~a~~~~~~k~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~  242 (304)
                                  +++..    .+++.+++||+.|.+..||..++.  ....... .........+... ...........
T Consensus       144 ------------~~~~~----~~~l~aa~~~a~~~i~~~~~~~~~--~~~~~~~-~~~~~~~~~~~~~-~~~~~~~~~~~  203 (256)
T TIGR00688       144 ------------KGSLP----WEALVLAFSFTAYGLIRKALKNTD--LAGFCLE-TLSLMPVAIYYLL-QTDFATVQQTN  203 (256)
T ss_pred             ------------cCCch----HHHHHHHHHHHHHHHHHhhcCCCC--cchHHHH-HHHHHHHHHHHHH-HhccCcccccC
Confidence                        01111    357889999999999999975432  2222111 1111111111111 11111111111


Q ss_pred             CcchHHHHHHHHhhccchheeeeeeeecccCceeeeeccchHHHHHHHHHHHH
Q 022016          243 SSLEIFCCFFSGAIGSGVSFCVQAWCISKRGPLFSAMFNPLCTVIVTILAALL  295 (304)
Q Consensus       243 ~~~~~~~~~~~g~~~~~~~~~l~~~~~~~~~a~~~s~~~~l~pv~a~l~~~~~  295 (304)
                      +..+|..+++.|++ +.++|.+|++++|+.++++++++.|+||+++.+++.+.
T Consensus       204 ~~~~~~~l~~~g~~-t~i~~~l~~~a~~~~~a~~~s~~~yl~Pv~~~~~~~~~  255 (256)
T TIGR00688       204 PFPIWLLLVLAGLI-TGTPLLAFVIAANRLPLNLLGLLQYIGPTIMMLCVSFL  255 (256)
T ss_pred             chhHHHHHHHHHHH-HHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHHHHh
Confidence            22378888888876 88999999999999999999999999999999999764

This uncharacterized protein is predicted to have many membrane-spanning domains.

>TIGR03340 phn_DUF6 phosphonate utilization associated putative membrane protein

Probab=99.95  E-value=3.4e-26  Score=203.79  Aligned_cols=259  Identities=10%  Similarity=0.072  Sum_probs=190.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHhhh-ccccCCCCCHHHHHHHHHHHHHHHHHHH
Q 022016           10 AMAMLALQFSYAVVALSTRAALLQGMNPRVFVVYRQAIATLFMAPMAYLSS-RKYKSSSMGLRSFSLIFFIALLGVTINQ   88 (304)
Q Consensus        10 ~~~~l~~~~~~~~~~~~~k~~~~~~~~p~~~~~~R~~~a~~~l~~~~~~~~-~~~~~~~~~~~~~~~~~~~g~~~~~~~~   88 (304)
                      ..+.++++++|+...+..|...++ .++  ..+++.....+.+.|+...+. ++.+ +. .+++++.....+.++...++
T Consensus         3 ~~~~~~aa~~~a~~~~~~k~~~~~-~~~--~~~~~~~~~~~~l~~~~~~~~~~~~~-~~-~~~~~~~~~~~~~~~~~~~~   77 (281)
T TIGR03340         3 LTLVVFSALMHAGWNLMAKSHADK-EPD--FLWWALLAHSVLLTPYGLWYLAQVGW-SR-LPATFWLLLAISAVANMVYF   77 (281)
T ss_pred             HHHHHHHHHHHHHHHHHHhhcCCc-hhH--HHHHHHHHHHHHHHHHHHHhcccCCC-CC-cchhhHHHHHHHHHHHHHHH
Confidence            457789999999999999976644 344  357777777777777765432 2222 22 23444445555555568999


Q ss_pred             HHHHHHhhccccchhhhhcchhHHHHHHHHHHHhcccccccccccchhhhHHHHHHHhHhhhhhccCCccccccCCcccc
Q 022016           89 NTYFEGLYLASSSMASAMGNLIPAITFVMASIVGLEKIDLGSVRSVAKILGTIFCVGGAISMALLRGPKLLNTEFLPEKS  168 (304)
Q Consensus        89 ~~~~~al~~~~~~~a~~i~~~~Pi~~~lla~l~~~er~~~~~~~~~~~~~g~~l~~~G~~li~~~~~~~~~~~~~~~~~~  168 (304)
                      .++++|++++++++++.+.++.|+++.+++++++|||++++      ++.|+.+++.|++++.   .++           
T Consensus        78 ~~~~~a~~~~~~~~~~~l~~~~p~~~~l~~~~~~~e~~~~~------~~~g~~~~~~Gv~ll~---~~~-----------  137 (281)
T TIGR03340        78 LGLAQAYHHADVGLVYPLARSSPLLVAIWATLTLGETLSPL------AWLGILIITLGLLVLG---LSR-----------  137 (281)
T ss_pred             HHHHHHHhcCChhhhhhHHhhhHHHHHHHHHHHHcCCCCHH------HHHHHHHHHHHHHHHh---ccc-----------
Confidence            99999999999999999999999999999999999999999      9999999999999987   221           


Q ss_pred             ccccCCCCCchHHHHHHHHHHHHHHHHHHHhHHHHhhcCCCchh----HHHHHHHHHHHHHHHHHHhcCCCcccccccCc
Q 022016          169 FLFRSSGGENWLLGCLFLFASACCWSLWLILQVPVSASYPDHLS----LSAWMCFLATLQSATFAIFTEPDPEAWNLHSS  244 (304)
Q Consensus       169 ~~~~~~~~~~~~~G~~~~l~a~~~~a~~~~~~k~~~~~~~~~~~----~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~  244 (304)
                            ..+.+..|+.+++.++++|+.|.+..|+..++.+ +..    ...+.+..+++...+.....+...  .. .+.
T Consensus       138 ------~~~~~~~g~~~~l~aal~~a~~~i~~k~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~-~~~  207 (281)
T TIGR03340       138 ------FAQHRRKAYAWALAAALGTAIYSLSDKAAALGVP-AFYSALGYLGIGFLAMGWPFLLLYLKRHGRS--MF-PYA  207 (281)
T ss_pred             ------ccccchhHHHHHHHHHHHHHHhhhhccccccchh-cccccHHHHHHHHHHHHHHHHHHHHHHhccc--hh-hhH
Confidence                  1112346888999999999999999998755442 322    222222222122222211111111  11 122


Q ss_pred             chHHHHHHHHhhccchheeeeeeeecccCceeeeeccchHHHHHHHHHHHHhCCccccC
Q 022016          245 LEIFCCFFSGAIGSGVSFCVQAWCISKRGPLFSAMFNPLCTVIVTILAALLLHEEIYTG  303 (304)
Q Consensus       245 ~~~~~~~~~g~~~~~~~~~l~~~~~~~~~a~~~s~~~~l~pv~a~l~~~~~~~e~~~~~  303 (304)
                      ..++..++.+.+++.++|.+|++++++.++++++.+.+++|+++.+++++++||+++..
T Consensus       208 ~~~~~~~~~~~~~s~l~~~l~~~al~~~~a~~~~~~~~l~pv~a~l~g~~~lgE~~~~~  266 (281)
T TIGR03340       208 RQILPSATLGGLMIGGAYALVLWAMTRLPVATVVALRNTSIVFAVVLGIWFLNERWYLT  266 (281)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhhCCceEEEeecccHHHHHHHHHHHHhCCCccHH
Confidence            34566778888899999999999999999999999999999999999999999999853

This family of hydrophobic proteins has some homology to families of integral membrane proteins such as (pfam00892) and may be a permease. It occurs in the vicinity of various types of operons for the catabolism of phosphonates in Vibrio, Pseudomonas, Polaromonas and Thiomicrospira.

>TIGR00817 tpt Tpt phosphate/phosphoenolpyruvate translocator

Probab=99.94  E-value=1.8e-25  Score=201.15  Aligned_cols=258  Identities=15%  Similarity=0.089  Sum_probs=197.9

Q ss_pred             HHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHhhhccccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022016           15 ALQFSYAVVALSTRAALLQGMNPRVFVVYRQAIATLFMAPMAYLSSRKYKSSSMGLRSFSLIFFIALLGVTINQNTYFEG   94 (304)
Q Consensus        15 ~~~~~~~~~~~~~k~~~~~~~~p~~~~~~R~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~a   94 (304)
                      .-..+-...-+.+|+++++--.|..+.+.|+..+.+...+... .+.+++ ++.++++++.....|+++ +.+..+.+.|
T Consensus         9 ~w~~~~~~~~~~NK~~l~~~~~P~~~~~~~~~~~~~~~~~~~~-~~~~~~-~~~~~~~~~~~~~~g~~~-~~~~~~~~~~   85 (302)
T TIGR00817         9 LWYFLNVYFNIYNKKLLNVFPYPYFKTLISLAVGSLYCLLSWS-SGLPKR-LKISSALLKLLLPVAIVH-TIGHVTSNVS   85 (302)
T ss_pred             HHHHHHHHHHHHHHHHHhhCChhHHHHHHHHHHHHHHHHHHHH-hCCCCC-CCCCHHHHHHHHHHHHHH-HHHHHHHHHH
Confidence            3333444444689999975466899999999988877655521 122233 557899999999999997 8899999999


Q ss_pred             hhccccchhhhhcchhHHHHHHHHHHHhcccccccccccchhhhHHHHHHHhHhhhhhccCCccccccCCccccccccCC
Q 022016           95 LYLASSSMASAMGNLIPAITFVMASIVGLEKIDLGSVRSVAKILGTIFCVGGAISMALLRGPKLLNTEFLPEKSFLFRSS  174 (304)
Q Consensus        95 l~~~~~~~a~~i~~~~Pi~~~lla~l~~~er~~~~~~~~~~~~~g~~l~~~G~~li~~~~~~~~~~~~~~~~~~~~~~~~  174 (304)
                      +++++++.++++.++.|+++.+++++++|||++++      ++.|+++++.|+++..   ..                  
T Consensus        86 l~~~s~s~~~li~~~~Pv~~~ll~~~~~~e~~~~~------~~~~l~l~~~Gv~l~~---~~------------------  138 (302)
T TIGR00817        86 LSKVAVSFTHTIKAMEPFFSVVLSAFFLGQEFPST------LWLSLLPIVGGVALAS---DT------------------  138 (302)
T ss_pred             HHhccHHHHHHHHhcchHHHHHHHHHHhCCCCcHH------HHHHHHHHHHHHhhhc---CC------------------
Confidence            99999999999999999999999999999999999      9999999999998765   11                  


Q ss_pred             CCCchHHHHHHHHHHHHHHHHHHHhHHHHhh--cCCCchhHHHHHHHHHHHHHHHHHHhcCCCcc---cccc----cCc-
Q 022016          175 GGENWLLGCLFLFASACCWSLWLILQVPVSA--SYPDHLSLSAWMCFLATLQSATFAIFTEPDPE---AWNL----HSS-  244 (304)
Q Consensus       175 ~~~~~~~G~~~~l~a~~~~a~~~~~~k~~~~--~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~---~~~~----~~~-  244 (304)
                      +.+....|+++++.++++|++|.++.||..+  +. |+...+.+++..+.+.+.|.....++...   ++..    ... 
T Consensus       139 ~~~~~~~G~~~~l~a~~~~a~~~v~~k~~~~~~~~-~~~~~~~~~~~~~~~~l~p~~~~~~~~~~~~~~~~~~~~~~~~~  217 (302)
T TIGR00817       139 ELSFNWAGFLSAMISNITFVSRNIFSKKAMTIKSL-DKTNLYAYISIMSLFLLSPPAFITEGPPFLPHGFMQAISGVNVT  217 (302)
T ss_pred             cccccHHHHHHHHHHHHHHHHHHHHHHHhhccCCC-CcccHHHHHHHHHHHHHHHHHHHHcchHHHHHHHHHhhcccCch
Confidence            1223457999999999999999999999887  66 68999999999999999988775543211   1100    000 


Q ss_pred             chHHHHHHHHhhccchheeeeeeeecccCceeeeeccchHHHHHHHHHHHHhCCccccC
Q 022016          245 LEIFCCFFSGAIGSGVSFCVQAWCISKRGPLFSAMFNPLCTVIVTILAALLLHEEIYTG  303 (304)
Q Consensus       245 ~~~~~~~~~g~~~~~~~~~l~~~~~~~~~a~~~s~~~~l~pv~a~l~~~~~~~e~~~~~  303 (304)
                      ..+...+..+..+....+.++++++++.++.+.+...+++|++++++|++++||+++..
T Consensus       218 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~sa~t~sv~~~l~pv~~~~~~~~~lge~lt~~  276 (302)
T TIGR00817       218 KIYTVSLVAAMGFFHFYQQVAFMLLGRVSPLTHSVGNCMKRVVVIVVSILFFGTKISPQ  276 (302)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHccCCchHHHHHhhhhhhheeeeehhhcCCCCchh
Confidence            11211223332222222345568999999999999999999999999999999999863

specificities overlap.

>PTZ00343 triose or hexose phosphate/phosphate translocator; Provisional

Probab=99.92  E-value=3e-23  Score=189.97  Aligned_cols=266  Identities=15%  Similarity=0.114  Sum_probs=206.5

Q ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHHhcCCC-hHHHHHHHHHHHHHHHHHHHHhhhccccCCCC--CHHHHHHHHHHHHH
Q 022016            6 DYKPAMAMLALQFSYAVVALSTRAALLQGMN-PRVFVVYRQAIATLFMAPMAYLSSRKYKSSSM--GLRSFSLIFFIALL   82 (304)
Q Consensus         6 ~~~g~~~~l~~~~~~~~~~~~~k~~~~~~~~-p~~~~~~R~~~a~~~l~~~~~~~~~~~~~~~~--~~~~~~~~~~~g~~   82 (304)
                      +.+...+.+....+-......+|.++++ ++ |..+..+|++++.++...++... .+++ ++.  .+++++..+..|++
T Consensus        47 ~~~~~~~~~~wy~~s~~~~~~nK~vl~~-~~~P~~l~~~~~~~~~l~~~~~~~~~-~~~~-~~~~~~~~~~~~llp~gl~  123 (350)
T PTZ00343         47 KWKLALLFLTWYALNVLYVVDNKLALNM-LPLPWTISSLQLFVGWLFALLYWATG-FRKI-PRIKSLKLFLKNFLPQGLC  123 (350)
T ss_pred             cHHHHHHHHHHHHHHHHHHHHHHHHHHh-CChhHHHHHHHHHHHHHHHHHHHHhC-CCCC-CCCCCHHHHHHHHHHHHHH
Confidence            4455666666666667777899999976 99 99999999999988765554322 2222 334  35577888899999


Q ss_pred             HHHHHHHHHHHHhhccccchhhhhcchhHHHHHHHHHHHhcccccccccccchhhhHHHHHHHhHhhhhhccCCcccccc
Q 022016           83 GVTINQNTYFEGLYLASSSMASAMGNLIPAITFVMASIVGLEKIDLGSVRSVAKILGTIFCVGGAISMALLRGPKLLNTE  162 (304)
Q Consensus        83 ~~~~~~~~~~~al~~~~~~~a~~i~~~~Pi~~~lla~l~~~er~~~~~~~~~~~~~g~~l~~~G~~li~~~~~~~~~~~~  162 (304)
                      +.+ .+...+.|+++++++.++++..+.|+++.+++++++|||++++      ++.++++++.|+.+...   .      
T Consensus       124 ~~~-~~~~~~~sl~~~svs~~~iika~~Pvft~lls~~~l~ek~s~~------~~l~l~l~v~Gv~l~~~---~------  187 (350)
T PTZ00343        124 HLF-VHFGAVISMGLGAVSFTHVVKAAEPVFTALLSILFLKQFLNLY------AYLSLIPIVGGVALASV---K------  187 (350)
T ss_pred             HHH-HHHHHHHHHhhccHHHHHHHHHhhHHHHHHHHHHHhCCCccHH------HHHHHHHHHHHHHheec---c------
Confidence            854 4666779999999999999999999999999999999999999      99999999999999882   2      


Q ss_pred             CCccccccccCCCCCchHHHHHHHHHHHHHHHHHHHhHHHHhhcCC------CchhHHHHHHHHHHHHHHHHHHhcCCC-
Q 022016          163 FLPEKSFLFRSSGGENWLLGCLFLFASACCWSLWLILQVPVSASYP------DHLSLSAWMCFLATLQSATFAIFTEPD-  235 (304)
Q Consensus       163 ~~~~~~~~~~~~~~~~~~~G~~~~l~a~~~~a~~~~~~k~~~~~~~------~~~~~~~~~~~~~~l~~~~~~~~~~~~-  235 (304)
                                  +.+....|++++++|+++|++|.++.|+..++.+      ++.....+....+.+.++|.....|.. 
T Consensus       188 ------------~~~~~~~G~~~~l~s~~~~a~~~i~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lp~~~~~e~~~  255 (350)
T PTZ00343        188 ------------ELHFTWLAFWCAMLSNLGSSLRSIFAKKTMKNKSEIGENLTASNIYMLLTLIASLISLPLVLFFEGKK  255 (350)
T ss_pred             ------------cchhHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccCCHHHHHHHHHHHHHHHHHHHHHHHhhHH
Confidence                        1223568999999999999999999999876541      355555666888999998887755432 


Q ss_pred             -ccccc----ccCcchHHHHHHHHhhccchheeeeee----eecccCceeeeeccchHHHHHHHHHHHHhCCccccC
Q 022016          236 -PEAWN----LHSSLEIFCCFFSGAIGSGVSFCVQAW----CISKRGPLFSAMFNPLCTVIVTILAALLLHEEIYTG  303 (304)
Q Consensus       236 -~~~~~----~~~~~~~~~~~~~g~~~~~~~~~l~~~----~~~~~~a~~~s~~~~l~pv~a~l~~~~~~~e~~~~~  303 (304)
                       ...+.    ..+...+..+.+ .++.+++++.+|++    +++++++...+...+++|+++++++++++||+++..
T Consensus       256 ~~~~~~~~~~~~~~~~~~~~l~-~i~~s~l~~~l~n~~~f~~l~~~s~~t~sv~~~lk~V~~iv~s~l~~ge~lt~~  331 (350)
T PTZ00343        256 WVPVWTNYTANMTNYTKGIIIF-KIFFSGVWYYLYNEVAFYCLGKVNQVTHAVANTLKRVVIIVSSIIIFQTQVTLL  331 (350)
T ss_pred             HHHHHHHhhhcccccchHHHHH-HHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHhhhhHHHhCCCCchH
Confidence             11110    001112233344 45567999999985    999999999999999999999999999999999863

>COG0697 RhaT Permeases of the drug/metabolite transporter (DMT) superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / General function prediction only]

Probab=99.91  E-value=2.4e-22  Score=178.79  Aligned_cols=265  Identities=23%  Similarity=0.285  Sum_probs=203.7

Q ss_pred             ccchHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHhhhccccCCCCCHHHHHHHHHHHHHH
Q 022016            4 LRDYKPAMAMLALQFSYAVVALSTRAALLQGMNPRVFVVYRQAIATLFMAPMAYLSSRKYKSSSMGLRSFSLIFFIALLG   83 (304)
Q Consensus         4 ~~~~~g~~~~l~~~~~~~~~~~~~k~~~~~~~~p~~~~~~R~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~   83 (304)
                      ++...+....++.++.|+.+....|...++..++....+.|...+.....+.... ++... ++ ..+++++..+.+.++
T Consensus         3 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~-~~-~~~~~~~~~~~~~~~   79 (292)
T COG0697           3 RALLLGLLALLLWGLLWGLSFIALKLAVESLDPFLFAAALRFLIAALLLLPLLLL-EPRGL-RP-ALRPWLLLLLLALLG   79 (292)
T ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHHHhcccCChHHHHHHHHHHHHHHHHHHHHh-hcccc-cc-cccchHHHHHHHHHH
Confidence            4466778888999999999999999998653666666677999998884443322 11111 11 122245667777777


Q ss_pred             HHHHHHHHHHHhhccccchhhhhcchhHHHHHHHHH-HHhcccccccccccchhhhHHHHHHHhHhhhhhccCCcccccc
Q 022016           84 VTINQNTYFEGLYLASSSMASAMGNLIPAITFVMAS-IVGLEKIDLGSVRSVAKILGTIFCVGGAISMALLRGPKLLNTE  162 (304)
Q Consensus        84 ~~~~~~~~~~al~~~~~~~a~~i~~~~Pi~~~lla~-l~~~er~~~~~~~~~~~~~g~~l~~~G~~li~~~~~~~~~~~~  162 (304)
                      ...++.+++.+++++++++++.+.++.|+++.++++ +++|||++++      ++.++.+++.|++++.   .++..   
T Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~l~~~~p~~~~~~~~~~~~~e~~~~~------~~~~~~~~~~Gv~lv~---~~~~~---  147 (292)
T COG0697          80 LALPFLLLFLALKYTSASVASLIIGLLPLFTALLAVLLLLGERLSLL------QILGILLALAGVLLIL---LGGGG---  147 (292)
T ss_pred             HHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHccCCCcHH------HHHHHHHHHHhHHhee---cCCCc---
Confidence            799999999999999999999999999999999997 6679999999      9999999999999999   33211   


Q ss_pred             CCccccccccCCCCCchHHHHHHHHHHHHHHHHHHHhHHHHhhcCCCchhHHH-HHHHHHHHHHHHHHHhcCCCcccccc
Q 022016          163 FLPEKSFLFRSSGGENWLLGCLFLFASACCWSLWLILQVPVSASYPDHLSLSA-WMCFLATLQSATFAIFTEPDPEAWNL  241 (304)
Q Consensus       163 ~~~~~~~~~~~~~~~~~~~G~~~~l~a~~~~a~~~~~~k~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~~~~~~~  241 (304)
                                 +..+ ...|+.+++.++++|+.+.+..|+.. +. ++..... +..........+... .+.+    ..
T Consensus       148 -----------~~~~-~~~g~~~~l~a~~~~a~~~~~~~~~~-~~-~~~~~~~~~~~~~~~~~~~~~~~-~~~~----~~  208 (292)
T COG0697         148 -----------GGIL-SLLGLLLALAAALLWALYTALVKRLS-RL-GPVTLALLLQLLLALLLLLLFFL-SGFG----AP  208 (292)
T ss_pred             -----------chhH-HHHHHHHHHHHHHHHHHHHHHHHHhc-CC-ChHHHHHHHHHHHHHHHHHHHHh-cccc----cc
Confidence                       0111 67999999999999999999999987 54 3555554 444322222222222 1111    22


Q ss_pred             cCcchHHHHHHHHhhccchheeeeeeeecccCceeeeeccchHHHHHHHHHHHHhCCcccc
Q 022016          242 HSSLEIFCCFFSGAIGSGVSFCVQAWCISKRGPLFSAMFNPLCTVIVTILAALLLHEEIYT  302 (304)
Q Consensus       242 ~~~~~~~~~~~~g~~~~~~~~~l~~~~~~~~~a~~~s~~~~l~pv~a~l~~~~~~~e~~~~  302 (304)
                      .+..++....+.|++++++++.+|++++++.+++.++...+++|+++.+++++++||+++.
T Consensus       209 ~~~~~~~~~~~~g~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~l~~~e~~~~  269 (292)
T COG0697         209 ILSRAWLLLLYLGVFSTGLAYLLWYYALRLLGASLVALLSLLEPVFAALLGVLLLGEPLSP  269 (292)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHhCCCCcH
Confidence            2345788889999999999999999999999999999999999999999999999999875

>PF06027 DUF914: Eukaryotic protein of unknown function (DUF914); InterPro: IPR009262 This family consists of several hypothetical proteins of unknown function

Probab=99.88  E-value=4.2e-21  Score=172.33  Aligned_cols=275  Identities=14%  Similarity=0.121  Sum_probs=213.7

Q ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHHhcCCC-hHHHHHHHHHHHHHHHHHHHHhhhc-cccCCCCCHHHHHHHHHHHHHH
Q 022016            6 DYKPAMAMLALQFSYAVVALSTRAALLQGMN-PRVFVVYRQAIATLFMAPMAYLSSR-KYKSSSMGLRSFSLIFFIALLG   83 (304)
Q Consensus         6 ~~~g~~~~l~~~~~~~~~~~~~k~~~~~~~~-p~~~~~~R~~~a~~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~g~~~   83 (304)
                      ..+..+..=..+++-+.+...+....++|.+ |....++-+..-.++..+...++++ ++. .+..+++++++++.+++.
T Consensus        11 ~~~~~~lgQ~lsl~~~~t~~~s~~l~~~~~~~P~~Qs~~~Y~~l~~vy~~~~~~r~~~~~~-~~~~~~~~w~y~lla~~D   89 (334)
T PF06027_consen   11 FWIVLLLGQVLSLCITGTGTFSSLLANKGVNIPTFQSFFNYVLLALVYTPILLYRRGFKKW-LKVLKRPWWKYFLLALLD   89 (334)
T ss_pred             HHHHHHHHHHHHHHHHhHHHHHHHHHhcCccCcHHHHHHHHHHHHHHHhhhhhhccccccc-hhhcchhHHHHHHHHHHH
Confidence            3445555556778888888888888877766 7777777777777766665554333 233 334567788888999998


Q ss_pred             HHHHHHHHHHHhhccccchhhhhcchhHHHHHHHHHHHhcccccccccccchhhhHHHHHHHhHhhhhhccCCccccccC
Q 022016           84 VTINQNTYFEGLYLASSSMASAMGNLIPAITFVMASIVGLEKIDLGSVRSVAKILGTIFCVGGAISMALLRGPKLLNTEF  163 (304)
Q Consensus        84 ~~~~~~~~~~al~~~~~~~a~~i~~~~Pi~~~lla~l~~~er~~~~~~~~~~~~~g~~l~~~G~~li~~~~~~~~~~~~~  163 (304)
                       ..++.+.+.|++|++.+.++++..+.-+++.+++++++|||.++.      |++|+++++.|+.++...  +... .  
T Consensus        90 -v~aN~~~v~a~~yTsvtS~~lL~~~~i~~~~~LS~~fL~~ry~~~------~~~gv~i~i~Gv~lv~~s--D~~~-~--  157 (334)
T PF06027_consen   90 -VEANYLVVLAYQYTSVTSVQLLDCTSIPFVMILSFIFLKRRYSWF------HILGVLICIAGVVLVVVS--DVLS-G--  157 (334)
T ss_pred             -HHHHHHHHHHhhcccHhHHHhhhhhhhHHHHHHHHHHHHhhhhHH------HHHHHHHHHhhhhheeee--cccc-c--
Confidence             899999999999999999999999999999999999999999999      999999999999998841  1111 0  


Q ss_pred             CccccccccCCCCCchHHHHHHHHHHHHHHHHHHHhHHHHhhcCCCchhHHHHHHHHHHHHHHHHHHhcCCC-ccccccc
Q 022016          164 LPEKSFLFRSSGGENWLLGCLFLFASACCWSLWLILQVPVSASYPDHLSLSAWMCFLATLQSATFAIFTEPD-PEAWNLH  242 (304)
Q Consensus       164 ~~~~~~~~~~~~~~~~~~G~~~~l~a~~~~a~~~~~~k~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~-~~~~~~~  242 (304)
                             ++++++++..+||++++.|+++||++.++.++..++.+ ......+..++|.+...+...+.|.+ .......
T Consensus       158 -------~~~~~~~~~i~GDll~l~~a~lya~~nV~~E~~v~~~~-~~~~lg~~Glfg~ii~~iq~~ile~~~i~~~~w~  229 (334)
T PF06027_consen  158 -------SDSSSGSNPILGDLLALLGAILYAVSNVLEEKLVKKAP-RVEFLGMLGLFGFIISGIQLAILERSGIESIHWT  229 (334)
T ss_pred             -------ccCCCCCccchhHHHHHHHHHHHHHHHHHHHHhcccCC-HHHHHHHHHHHHHHHHHHHHHheehhhhhccCCC
Confidence                   01235567889999999999999999999999999984 88888888889999888777666533 2222211


Q ss_pred             CcchHHHHHHHHhhccchheeeeeeeecccCceeeeeccchHHHHHHHHHHHHhCCccccC
Q 022016          243 SSLEIFCCFFSGAIGSGVSFCVQAWCISKRGPLFSAMFNPLCTVIVTILAALLLHEEIYTG  303 (304)
Q Consensus       243 ~~~~~~~~~~~g~~~~~~~~~l~~~~~~~~~a~~~s~~~~l~pv~a~l~~~~~~~e~~~~~  303 (304)
                       ...+.. .....++...-|.+....++..+|+..+.-..+..+++++++++++|+++++.
T Consensus       230 -~~~~~~-~v~~~~~lf~~y~l~p~~l~~ssAt~~nLsLLTsd~~ali~~i~~f~~~~~~l  288 (334)
T PF06027_consen  230 -SQVIGL-LVGYALCLFLFYSLVPIVLRMSSATFFNLSLLTSDFYALIIDIFFFGYKFSWL  288 (334)
T ss_pred             -hhhHHH-HHHHHHHHHHHHHHHHHHHHhCccceeehHHHHhhHHHHHHHHHhcCccccHH
Confidence             122222 22223355666777888999999999999999999999999999999999863

Some of the sequences in this family are annotated as putative membrane proteins.

>COG2962 RarD Predicted permeases [General function prediction only]

Probab=99.86  E-value=3.5e-20  Score=159.19  Aligned_cols=261  Identities=13%  Similarity=0.104  Sum_probs=202.6

Q ss_pred             ccchHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHhhhccccCC--CCCHHHHHHHHHHHH
Q 022016            4 LRDYKPAMAMLALQFSYAVVALSTRAALLQGMNPRVFVVYRQAIATLFMAPMAYLSSRKYKSS--SMGLRSFSLIFFIAL   81 (304)
Q Consensus         4 ~~~~~g~~~~l~~~~~~~~~~~~~k~~~~~~~~p~~~~~~R~~~a~~~l~~~~~~~~~~~~~~--~~~~~~~~~~~~~g~   81 (304)
                      ++..+|+++.+.+.++||..+...|... + .++.++...|...+..++..+....++++..+  .-++|++..+.+.+.
T Consensus         3 ~~~~~Gil~~l~Ay~lwG~lp~y~kll~-~-~~~~eIlahRviwS~~~~l~ll~~~r~~~~~~~~~~~p~~~~~~~l~a~   80 (293)
T COG2962           3 KDSRKGILLALLAYLLWGLLPLYFKLLE-P-LPATEILAHRVIWSFPFMLALLFLLRQWRELKQLLKQPKTLLMLALTAL   80 (293)
T ss_pred             CcccchhHHHHHHHHHHHHHHHHHHHHc-c-CCHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhCcHHHHHHHHHHH
Confidence            4567999999999999999999999975 3 89999999999999999888776655433211  113455555666666


Q ss_pred             HHHHHHHHHHHHHhhccccchhhhhcchhHHHHHHHHHHHhcccccccccccchhhhHHHHHHHhHhhhhhccCCccccc
Q 022016           82 LGVTINQNTYFEGLYLASSSMASAMGNLIPAITFVMASIVGLEKIDLGSVRSVAKILGTIFCVGGAISMALLRGPKLLNT  161 (304)
Q Consensus        82 ~~~~~~~~~~~~al~~~~~~~a~~i~~~~Pi~~~lla~l~~~er~~~~~~~~~~~~~g~~l~~~G~~li~~~~~~~~~~~  161 (304)
                      . ...++..|.+|.+...+-++++-++..|++..+++.+++|||+++.      |++++.++..|+......        
T Consensus        81 l-i~~nW~lfiWAvn~g~~leaSLGY~InPL~~VllG~lflkErls~~------Q~iAV~lA~~GV~~~~~~--------  145 (293)
T COG2962          81 L-IGLNWWLFIWAVNNGHVLEASLGYFINPLVNVLLGRLFLKERLSRL------QWIAVGLAAAGVLIQTWL--------  145 (293)
T ss_pred             H-HHHHHHHhheecCCCchhHHHhHHHHHHHHHHHHHHHHHHhhccHH------HHHHHHHHHHHHHHHHHH--------
Confidence            6 4999999999999999999999999999999999999999999999      999999999999999841        


Q ss_pred             cCCccccccccCCCCCchHHHHHHHHHHHHHHHHHHHhHHHHhhcCCCchhHHHHHHHHHHHHHHHHHHhcCCCcccccc
Q 022016          162 EFLPEKSFLFRSSGGENWLLGCLFLFASACCWSLWLILQVPVSASYPDHLSLSAWMCFLATLQSATFAIFTEPDPEAWNL  241 (304)
Q Consensus       162 ~~~~~~~~~~~~~~~~~~~~G~~~~l~a~~~~a~~~~~~k~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~  241 (304)
                                   .++-.    ..++.=+++|+.|...-|+..  . |+.+-...-+..-...........+...+....
T Consensus       146 -------------~g~lp----wval~la~sf~~Ygl~RK~~~--v-~a~~g~~lE~l~l~p~al~yl~~l~~~~~~~~~  205 (293)
T COG2962         146 -------------LGSLP----WVALALALSFGLYGLLRKKLK--V-DALTGLTLETLLLLPVALIYLLFLADSGQFLQQ  205 (293)
T ss_pred             -------------cCCCc----HHHHHHHHHHHHHHHHHHhcC--C-chHHhHHHHHHHHhHHHHHHHHHHhcCchhhhc
Confidence                         12222    244556799999998877652  3 354444444444444444444433322221111


Q ss_pred             cCcchHHHHHHHHhhccchheeeeeeeecccCceeeeeccchHHHHHHHHHHHHhCCcccc
Q 022016          242 HSSLEIFCCFFSGAIGSGVSFCVQAWCISKRGPLFSAMFNPLCTVIVTILAALLLHEEIYT  302 (304)
Q Consensus       242 ~~~~~~~~~~~~g~~~~~~~~~l~~~~~~~~~a~~~s~~~~l~pv~a~l~~~~~~~e~~~~  302 (304)
                      .++..+..++..|. .|.++..++..+.|+++-+..+.+.|.+|..-.+++.+++||+++.
T Consensus       206 ~~~~~~~LLv~aG~-vTavpL~lf~~aa~~lpls~~G~lqYi~Ptl~fllav~i~~E~~~~  265 (293)
T COG2962         206 NANSLWLLLVLAGL-VTAVPLLLFAAAAKRLPLSTLGFLQYIEPTLMFLLAVLIFGEPFDS  265 (293)
T ss_pred             CCchHHHHHHHhhH-HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHcCCCCCH
Confidence            34456777777777 6889999999999999999999999999999999999999999975

>KOG4510 consensus Permease of the drug/metabolite transporter (DMT) superfamily [General function prediction only]

Probab=99.86  E-value=5.3e-23  Score=173.22  Aligned_cols=276  Identities=11%  Similarity=0.036  Sum_probs=212.4

Q ss_pred             CccchHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHhhhccccCCCCCHHHHHHHHHHHHH
Q 022016            3 SLRDYKPAMAMLALQFSYAVVALSTRAALLQGMNPRVFVVYRQAIATLFMAPMAYLSSRKYKSSSMGLRSFSLIFFIALL   82 (304)
Q Consensus         3 ~~~~~~g~~~~l~~~~~~~~~~~~~k~~~~~~~~p~~~~~~R~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~   82 (304)
                      ++++.+|..+..+. ..+....++.+...+  .+|.+....|+++-.+...|-..++++.-..   +..+-+++++.|+.
T Consensus        33 ~d~p~~gl~l~~vs-~ff~~~~vv~t~~~e--~~p~e~a~~r~l~~mlit~pcliy~~~~v~g---p~g~R~~LiLRg~m  106 (346)
T KOG4510|consen   33 KDKPNLGLLLLTVS-YFFNSCMVVSTKVLE--NDPMELASFRLLVRMLITYPCLIYYMQPVIG---PEGKRKWLILRGFM  106 (346)
T ss_pred             cCCCccCceehhhH-HHHhhHHHhhhhhhc--cChhHhhhhhhhhehhhhheEEEEEeeeeec---CCCcEEEEEeehhh
Confidence            45667777777666 666666666666664  6999999999777777666654443332211   23334567788999


Q ss_pred             HHHHHHHHHHHHhhccccchhhhhcchhHHHHHHHHHHHhcccccccccccchhhhHHHHHHHhHhhhhhccCCcccccc
Q 022016           83 GVTINQNTYFEGLYLASSSMASAMGNLIPAITFVMASIVGLEKIDLGSVRSVAKILGTIFCVGGAISMALLRGPKLLNTE  162 (304)
Q Consensus        83 ~~~~~~~~~~~al~~~~~~~a~~i~~~~Pi~~~lla~l~~~er~~~~~~~~~~~~~g~~l~~~G~~li~~~~~~~~~~~~  162 (304)
                      | ..+..+.|+|++|.+.++|+++.+..|.++++++|.++|||.+..      +.++..+.+.|+++++   +|.+.+.+
T Consensus       107 G-~tgvmlmyya~~~mslaDA~vItFssPvft~ifaw~~LkE~~t~~------eaL~s~itl~GVVLIv---RPpFlFG~  176 (346)
T KOG4510|consen  107 G-FTGVMLMYYALMYMSLADAVVITFSSPVFTIIFAWAFLKEPFTKF------EALGSLITLLGVVLIV---RPPFLFGD  176 (346)
T ss_pred             h-hhHHHHHHHHHhhcchhheEEEEecChHHHHHHHHHHHcCCCcHH------HHHHHHHhhheEEEEe---cCCcccCC
Confidence            8 777888899999999999999999999999999999999999999      9999999999999999   99888765


Q ss_pred             CCccccccccCCCCCchHHHHHHHHHHHHHHHHHHHhHHHHhhcCCCchhHHHHHHHHHHHHHHHHHHhcCCCccccccc
Q 022016          163 FLPEKSFLFRSSGGENWLLGCLFLFASACCWSLWLILQVPVSASYPDHLSLSAWMCFLATLQSATFAIFTEPDPEAWNLH  242 (304)
Q Consensus       163 ~~~~~~~~~~~~~~~~~~~G~~~~l~a~~~~a~~~~~~k~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~  242 (304)
                      +...++.    +..+.+..|...++.+++..|--.++.|+..++.+ ......|..+++++...+..... +.. .++ .
T Consensus       177 ~t~g~~~----s~~~~~~~gt~aai~s~lf~asvyIilR~iGk~~h-~~msvsyf~~i~lV~s~I~~~~i-g~~-~lP-~  248 (346)
T KOG4510|consen  177 TTEGEDS----SQVEYDIPGTVAAISSVLFGASVYIILRYIGKNAH-AIMSVSYFSLITLVVSLIGCASI-GAV-QLP-H  248 (346)
T ss_pred             Ccccccc----ccccccCCchHHHHHhHhhhhhHHHHHHHhhcccc-EEEEehHHHHHHHHHHHHHHhhc-cce-ecC-c
Confidence            5332222    12244556677888888888888888888878874 66666777777777776554422 222 122 2


Q ss_pred             CcchHHHHHHHHhhccchheeeeeeeecccCceeeeeccchHHHHHHHHHHHHhCCccccC
Q 022016          243 SSLEIFCCFFSGAIGSGVSFCVQAWCISKRGPLFSAMFNPLCTVIVTILAALLLHEEIYTG  303 (304)
Q Consensus       243 ~~~~~~~~~~~g~~~~~~~~~l~~~~~~~~~a~~~s~~~~l~pv~a~l~~~~~~~e~~~~~  303 (304)
                      ...+|+.++.+|++ +.+++.+...++|+..|+.++.+.+.+.++|.++..++|||-+++-
T Consensus       249 cgkdr~l~~~lGvf-gfigQIllTm~lQiErAGpvaim~~~dvvfAf~wqv~ff~~~Pt~w  308 (346)
T KOG4510|consen  249 CGKDRWLFVNLGVF-GFIGQILLTMGLQIERAGPVAIMTYTDVVFAFFWQVLFFGHWPTIW  308 (346)
T ss_pred             cccceEEEEEehhh-hhHHHHHHHHHhhhhccCCeehhhHHHHHHHHHHHHHHhcCCChHH
Confidence            34688888889985 5788999999999999999999999999999999999999998863

>TIGR00776 RhaT RhaT L-rhamnose-proton symporter family protein

Probab=99.85  E-value=4.4e-20  Score=164.90  Aligned_cols=256  Identities=15%  Similarity=0.094  Sum_probs=189.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHhhhccccCCCCC-HHHHHHHHHHHHHHHHHH
Q 022016            9 PAMAMLALQFSYAVVALSTRAALLQGMNPRVFVVYRQAIATLFMAPMAYLSSRKYKSSSMG-LRSFSLIFFIALLGVTIN   87 (304)
Q Consensus         9 g~~~~l~~~~~~~~~~~~~k~~~~~~~~p~~~~~~R~~~a~~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~g~~~~~~~   87 (304)
                      +++++++++++||.+++..|...  |.++.++.  |..++.+++..+....++ +   +.+ ++.+..-+..|.. ...+
T Consensus         2 ~~l~~lia~~~wGs~g~~~k~~~--g~~~~~~~--~~~~g~l~~~~~~~~~~~-~---~~~~~~~~~~g~l~G~~-w~ig   72 (290)
T TIGR00776         2 DILIALIPALFWGSFVLINVKIG--GGPYSQTL--GTTFGALILSIAIAIFVL-P---EFWALSIFLVGLLSGAF-WALG   72 (290)
T ss_pred             chHHHHHHHHHHhhhHHHHhccC--CCHHHHHH--HHHHHHHHHHHHHHHHhC-C---cccccHHHHHHHHHHHH-HHhh
Confidence            46789999999999999999975  58888876  777777777665544332 1   122 3333334444444 6889


Q ss_pred             HHHHHHHhhccccchhhhhcc-hhHHHHHHHHHHHhcccccccccccchh----hhHHHHHHHhHhhhhhccCCcccccc
Q 022016           88 QNTYFEGLYLASSSMASAMGN-LIPAITFVMASIVGLEKIDLGSVRSVAK----ILGTIFCVGGAISMALLRGPKLLNTE  162 (304)
Q Consensus        88 ~~~~~~al~~~~~~~a~~i~~-~~Pi~~~lla~l~~~er~~~~~~~~~~~----~~g~~l~~~G~~li~~~~~~~~~~~~  162 (304)
                      +.+++.++++++++.+..+.+ +.|++..+.+.+++|||.+++      +    ..|+++.+.|++++..   .+..   
T Consensus        73 ~~~~~~ai~~~gva~a~~i~~~~~~v~~~l~~~~~f~e~~t~~------~~~~~~~g~~l~l~G~~l~~~---~~~~---  140 (290)
T TIGR00776        73 QINQFKSMRYMGVSKTMPISTGFQLVGGTLFGVIVFGEWSTSI------QTLLGLLALILIIIGVYLTSR---SKDK---  140 (290)
T ss_pred             hhhHHHHHHHHhHHHHhHHHHHHHHHHHHHHHHHHhhhccchH------HHHHHHHHHHHHHHhHheEEe---cccc---
Confidence            999999999999999999998 888899999999999999998      8    9999999999888862   1100   


Q ss_pred             CCccccccccCCCCCchHHHHHHHHHHHHHHHHHHHhHHHHhhcCCCchhH---HHHHHHHHHHHHHHHHHhcCCCcccc
Q 022016          163 FLPEKSFLFRSSGGENWLLGCLFLFASACCWSLWLILQVPVSASYPDHLSL---SAWMCFLATLQSATFAIFTEPDPEAW  239 (304)
Q Consensus       163 ~~~~~~~~~~~~~~~~~~~G~~~~l~a~~~~a~~~~~~k~~~~~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~~~~~  239 (304)
                        +.+     +++..+..+|.++++.++++|+.|.+..|+.  ++ +|...   ..+.+++++....+...    +..++
T Consensus       141 --~~~-----~~~~~~~~~Gi~~~l~sg~~y~~~~~~~~~~--~~-~~~~~~~~~~~g~~~~~~~~~~~~~----~~~~~  206 (290)
T TIGR00776       141 --SAG-----IKSEFNFKKGILLLLMSTIGYLVYVVVAKAF--GV-DGLSVLLPQAIGMVIGGIIFNLGHI----LAKPL  206 (290)
T ss_pred             --ccc-----cccccchhhHHHHHHHHHHHHHHHHHHHHHc--CC-CcceehhHHHHHHHHHHHHHHHHHh----cccch
Confidence              000     0000234689999999999999999999976  35 57777   44444444444333221    11111


Q ss_pred             cccCcchHHHHHHHHhhccchheeeeeeeec-ccCceeeeeccchHHHHHHHHHHHHhCCccccC
Q 022016          240 NLHSSLEIFCCFFSGAIGSGVSFCVQAWCIS-KRGPLFSAMFNPLCTVIVTILAALLLHEEIYTG  303 (304)
Q Consensus       240 ~~~~~~~~~~~~~~g~~~~~~~~~l~~~~~~-~~~a~~~s~~~~l~pv~a~l~~~~~~~e~~~~~  303 (304)
                         .++..+.....|++ .++++.+|..+.+ +.+++.++.+...||+.+.+.+++++||+.+..
T Consensus       207 ---~~~~~~~~~~~Gi~-~~ia~~~y~~~~~~~~~~~~~~~ls~~~pvia~~~~v~~l~E~~~~~  267 (290)
T TIGR00776       207 ---KKYAILLNILPGLM-WGIGNFFYLFSAQPKVGVATSFSLSQLGVIISTLGGILILGEKKTKR  267 (290)
T ss_pred             ---HHHHHHHHHHHHHH-HHHHHHHHHHHcccccchhhHHHHHHHHHHHHHHHHHHHhccCCCcc
Confidence               12233334448887 7999999999999 999999999999999999999999999998753

These proteins are members of the L-Rhamnose Symporter (RhaT) Family (TC 2.A.7). This family includes two characterized members, both of which function as L-rhamnose:H+ symporters and have 10 GES predicted transmembrane domains.

>COG5006 rhtA Threonine/homoserine efflux transporter [Amino acid transport and metabolism]

Probab=99.85  E-value=1.4e-19  Score=151.59  Aligned_cols=253  Identities=13%  Similarity=0.102  Sum_probs=210.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHhhhccccCCCCCHHHHHHHHHHHHHHHHHHH
Q 022016            9 PAMAMLALQFSYAVVALSTRAALLQGMNPRVFVVYRQAIATLFMAPMAYLSSRKYKSSSMGLRSFSLIFFIALLGVTINQ   88 (304)
Q Consensus         9 g~~~~l~~~~~~~~~~~~~k~~~~~~~~p~~~~~~R~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~   88 (304)
                      ++..++.+.+.--....+.|...+. ++|.-.+..|..++++++.++..   .++  .+.+++++......|... +.-|
T Consensus        13 p~~~ll~amvsiq~Gas~Ak~LFP~-vG~~g~t~lRl~~aaLIll~l~R---Pwr--~r~~~~~~~~~~~yGvsL-g~MN   85 (292)
T COG5006          13 PILALLVAMVSIQSGASFAKSLFPL-VGAAGVTALRLAIAALILLALFR---PWR--RRLSKPQRLALLAYGVSL-GGMN   85 (292)
T ss_pred             cHHHHHHHHHHHHhhHHHHHHHccc-cChhhHHHHHHHHHHHHHHHHhh---HHH--hccChhhhHHHHHHHHHH-HHHH
Confidence            5777888888888888899999987 99999999999999999888742   222  345789999999999997 8889


Q ss_pred             HHHHHHhhccccchhhhhcchhHHHHHHHHHHHhcccccccccccchhhhHHHHHHHhHhhhhhccCCccccccCCcccc
Q 022016           89 NTYFEGLYLASSSMASAMGNLIPAITFVMASIVGLEKIDLGSVRSVAKILGTIFCVGGAISMALLRGPKLLNTEFLPEKS  168 (304)
Q Consensus        89 ~~~~~al~~~~~~~a~~i~~~~Pi~~~lla~l~~~er~~~~~~~~~~~~~g~~l~~~G~~li~~~~~~~~~~~~~~~~~~  168 (304)
                      ++||.++++.|.+.+..+-++-|+.+.+++.   |   +.+      ....+.+++.|..++...+              
T Consensus        86 l~FY~si~riPlGiAVAiEF~GPL~vA~~~s---R---r~~------d~vwvaLAvlGi~lL~p~~--------------  139 (292)
T COG5006          86 LLFYLSIERIPLGIAVAIEFTGPLAVALLSS---R---RLR------DFVWVALAVLGIWLLLPLG--------------  139 (292)
T ss_pred             HHHHHHHHhccchhhhhhhhccHHHHHHHhc---c---chh------hHHHHHHHHHHHHhheecc--------------
Confidence            9999999999999999999999998877754   2   222      6677889999999888311              


Q ss_pred             ccccCCCCCchHHHHHHHHHHHHHHHHHHHhHHHHhhcCCCchhHHHHHHHHHHHHHHHHHHhcCCCcccccccCcchHH
Q 022016          169 FLFRSSGGENWLLGCLFLFASACCWSLWLILQVPVSASYPDHLSLSAWMCFLATLQSATFAIFTEPDPEAWNLHSSLEIF  248 (304)
Q Consensus       169 ~~~~~~~~~~~~~G~~~~l~a~~~~a~~~~~~k~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~  248 (304)
                          ++.++-+..|..+++.++.||+.|.+..||..+.. +...-....+.++++..+|+..... ...   ..++.-..
T Consensus       140 ----~~~~~lDp~Gv~~Al~AG~~Wa~YIv~G~r~g~~~-~g~~g~a~gm~vAaviv~Pig~~~a-g~~---l~~p~ll~  210 (292)
T COG5006         140 ----QSVWSLDPVGVALALGAGACWALYIVLGQRAGRAE-HGTAGVAVGMLVAALIVLPIGAAQA-GPA---LFSPSLLP  210 (292)
T ss_pred             ----CCcCcCCHHHHHHHHHHhHHHHHHHHHcchhcccC-CCchHHHHHHHHHHHHHhhhhhhhc-chh---hcChHHHH
Confidence                13455677999999999999999999999998766 4778888999999999999887222 221   12334566


Q ss_pred             HHHHHHhhccchheeeeeeeecccCceeeeeccchHHHHHHHHHHHHhCCccccC
Q 022016          249 CCFFSGAIGSGVSFCVQAWCISKRGPLFSAMFNPLCTVIVTILAALLLHEEIYTG  303 (304)
Q Consensus       249 ~~~~~g~~~~~~~~~l~~~~~~~~~a~~~s~~~~l~pv~a~l~~~~~~~e~~~~~  303 (304)
                      .-+..+++++.++|.+=..++++.+....+.++++||.++.+.+++++||.+|..
T Consensus       211 laLgvavlSSalPYsLEmiAL~rlp~~~F~~LlSLePa~aAl~G~i~L~e~ls~~  265 (292)
T COG5006         211 LALGVAVLSSALPYSLEMIALRRLPARTFGTLLSLEPALAALSGLIFLGETLTLI  265 (292)
T ss_pred             HHHHHHHHhcccchHHHHHHHhhCChhHHHHHHHhhHHHHHHHHHHHhcCCCCHH
Confidence            6688999999999999999999999999999999999999999999999999863

>COG2510 Predicted membrane protein [Function unknown]

Probab=99.69  E-value=3.1e-16  Score=118.29  Aligned_cols=136  Identities=15%  Similarity=0.250  Sum_probs=123.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHhhhccccCCCCCHHHHHHHHHHHHHHHHHH
Q 022016            8 KPAMAMLALQFSYAVVALSTRAALLQGMNPRVFVVYRQAIATLFMAPMAYLSSRKYKSSSMGLRSFSLIFFIALLGVTIN   87 (304)
Q Consensus         8 ~g~~~~l~~~~~~~~~~~~~k~~~~~~~~p~~~~~~R~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~   87 (304)
                      ...+++++++++||...++.|...++ +||....+.|..+...++..++...++.+.....++|.|..+.+.|+.+ +++
T Consensus         3 ~~~~~ALLsA~fa~L~~iF~KIGl~~-vdp~~At~IRtiVi~~~l~~v~~~~g~~~~~~~~~~k~~lflilSGla~-gls   80 (140)
T COG2510           3 AAIIYALLSALFAGLTPIFAKIGLEG-VDPDFATTIRTIVILIFLLIVLLVTGNWQAGGEIGPKSWLFLILSGLAG-GLS   80 (140)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHhccc-cCccHHHHHHHHHHHHHHHHHHHhcCceecccccCcceehhhhHHHHHH-HHH
Confidence            34678999999999999999999975 9999999999999999999988876665543346888898888888776 999


Q ss_pred             HHHHHHHhhccccchhhhhcchhHHHHHHHHHHHhcccccccccccchhhhHHHHHHHhHhhhh
Q 022016           88 QNTYFEGLYLASSSMASAMGNLIPAITFVMASIVGLEKIDLGSVRSVAKILGTIFCVGGAISMA  151 (304)
Q Consensus        88 ~~~~~~al~~~~~~~a~~i~~~~Pi~~~lla~l~~~er~~~~~~~~~~~~~g~~l~~~G~~li~  151 (304)
                      +.+||.|++..+++....+..++|+++.+++++++|||++..      +++|+++...|++++.
T Consensus        81 wl~Yf~ALk~G~as~VvPldk~svvl~~lls~lfL~E~ls~~------~~iG~~LI~~Gailvs  138 (140)
T COG2510          81 WLLYFRALKKGKASRVVPLDKTSVVLAVLLSILFLGERLSLP------TWIGIVLIVIGAILVS  138 (140)
T ss_pred             HHHHHHHHhcCCcceEEEcccccHHHHHHHHHHHhcCCCCHH------HHHHHHHHHhCeeeEe
Confidence            999999999999999999999999999999999999999999      9999999999998875

>KOG2765 consensus Predicted membrane protein [Function unknown]

Probab=99.63  E-value=8.5e-16  Score=135.78  Aligned_cols=209  Identities=18%  Similarity=0.199  Sum_probs=165.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhhccccchhhhhcchhHHHHHHHHHHHhcccccccccccchhhhHHHHHHHhHhhhhhc
Q 022016           74 SLIFFIALLGVTINQNTYFEGLYLASSSMASAMGNLIPAITFVMASIVGLEKIDLGSVRSVAKILGTIFCVGGAISMALL  153 (304)
Q Consensus        74 ~~~~~~g~~~~~~~~~~~~~al~~~~~~~a~~i~~~~Pi~~~lla~l~~~er~~~~~~~~~~~~~g~~l~~~G~~li~~~  153 (304)
                      +..+....+- ++.++.++.|+.+++++..+++.+++-+|+.+++.++.+||+++.      |.++..+++.|++++...
T Consensus       160 k~sl~fc~lW-F~anl~~naALa~TsVAS~TilSStSs~FtL~la~if~~e~ft~s------Kllav~~si~GViiVt~~  232 (416)
T KOG2765|consen  160 KLSLFFCPLW-FLANLTSNAALAFTSVASTTILSSTSSFFTLFLAAIFPVERFTLS------KLLAVFVSIAGVIIVTMG  232 (416)
T ss_pred             HHHHHHHHHH-HHHHHHHHHHhhhhhhhhhhhhhhcchHHHHHHHHHcCcchhhHH------HHHHHHHhhccEEEEEec
Confidence            3444555554 889999999999999999999999999999999999999999999      999999999999999963


Q ss_pred             cCCccccccCCccccccccCCCCCchHHHHHHHHHHHHHHHHHHHhHHHHhhcCCCchhHHH---HHHHHHHHHHHHHHH
Q 022016          154 RGPKLLNTEFLPEKSFLFRSSGGENWLLGCLFLFASACCWSLWLILQVPVSASYPDHLSLSA---WMCFLATLQSATFAI  230 (304)
Q Consensus       154 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~l~a~~~~a~~~~~~k~~~~~~~~~~~~~~---~~~~~~~l~~~~~~~  230 (304)
                      +..+.+             +.+......|+++++++|+.||+|.++.||...++.....+..   +.-++..+.+.|..+
T Consensus       233 ~s~~~~-------------~~~a~~~llG~llaL~sA~~YavY~vllk~~~~~eg~rvdi~lffGfvGLfnllllwP~l~  299 (416)
T KOG2765|consen  233 DSKQNS-------------DLPASRPLLGNLLALLSALLYAVYTVLLKRKIGDEGERVDIQLFFGFVGLFNLLLLWPPLI  299 (416)
T ss_pred             cccccc-------------cCCccchhHHHHHHHHHHHHHHHHHHHHHhhcccccccccHHHHHHHHHHHHHHHHhHHHH
Confidence            322111             2345667899999999999999999999999877632333333   334444444554433


Q ss_pred             hcC-CCcccccccCcchHHHHHHHHhhccchheeeeeeeecccCceeeeeccchHHHHHHHHHHHHhCCcccc
Q 022016          231 FTE-PDPEAWNLHSSLEIFCCFFSGAIGSGVSFCVQAWCISKRGPLFSAMFNPLCTVIVTILAALLLHEEIYT  302 (304)
Q Consensus       231 ~~~-~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~l~~~~~~~~~a~~~s~~~~l~pv~a~l~~~~~~~e~~~~  302 (304)
                      +.. ...+.+..++......++..+.+++.++-++|.++.-..++..++.-+.++-+.|++.+.++-+.++|+
T Consensus       300 iL~~~~~e~F~lP~~~q~~~vv~~~ligtvvSDylW~~a~~lTs~Lv~TlgmSltIPLA~~aD~l~k~~~~S~  372 (416)
T KOG2765|consen  300 ILDFFGEERFELPSSTQFSLVVFNNLIGTVVSDYLWAKAVLLTSPLVVTLGMSLTIPLAMFADVLIKGKHPSA  372 (416)
T ss_pred             HHHHhccCcccCCCCceeEeeeHhhHHHHHHHHHHHHHHHHhccchhheeeeeEeeeHHHHHHHHHcCCCCCH
Confidence            222 123345555555667778888999999999999999999999999999999999999999998887764

>PF00892 EamA: EamA-like transporter family; InterPro: IPR000620 This domain is found in proteins including the Erwinia chrysanthemi PecM protein, which is involved in pectinase, cellulase and blue pigment regulation; and the Salmonella typhimurium PagO protein, the function of which is unknown

Probab=99.61  E-value=3.3e-15  Score=116.10  Aligned_cols=125  Identities=22%  Similarity=0.388  Sum_probs=112.6

Q ss_pred             HHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHhhhccccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 022016           18 FSYAVVALSTRAALLQGMNPRVFVVYRQAIATLFMAPMAYLSSRKYKSSSMGLRSFSLIFFIALLGVTINQNTYFEGLYL   97 (304)
Q Consensus        18 ~~~~~~~~~~k~~~~~~~~p~~~~~~R~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~al~~   97 (304)
                      ++||...+..|...++ +||....++|+..+.+ ++++....++++. ++.+++++......|.++...++.++++++++
T Consensus         1 ~~~a~~~~~~k~~~~~-~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~   77 (126)
T PF00892_consen    1 FSWAIYSVFSKKLLKK-ISPLSITFWRFLIAGI-LLILLLILGRKPF-KNLSPRQWLWLLFLGLLGTALAYLLYFYALKY   77 (126)
T ss_pred             ceeeeHHHHHHHHhcc-CCHHHHHHHHHHHHHH-HHHHHHhhccccc-cCCChhhhhhhhHhhccceehHHHHHHHHHHh
Confidence            4699999999999977 9999999999999998 6666655555544 56688889989999999779999999999999


Q ss_pred             cccchhhhhcchhHHHHHHHHHHHhcccccccccccchhhhHHHHHHHhHhhhh
Q 022016           98 ASSSMASAMGNLIPAITFVMASIVGLEKIDLGSVRSVAKILGTIFCVGGAISMA  151 (304)
Q Consensus        98 ~~~~~a~~i~~~~Pi~~~lla~l~~~er~~~~~~~~~~~~~g~~l~~~G~~li~  151 (304)
                      +++++++.+.++.|+++.+++++++|||++++      ++.|+++++.|++++.
T Consensus        78 ~~~~~~~~~~~~~pv~~~i~~~~~~~e~~~~~------~~~g~~l~~~g~~l~~  125 (126)
T PF00892_consen   78 ISASIVSILQYLSPVFAAILGWLFLGERPSWR------QIIGIILIIIGVVLIS  125 (126)
T ss_pred             cchhHHHHHHHHHHHHHHHHHHHHcCCCCCHH------HHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999      9999999999999875

Many members of this family are classed as drug/metabolite transporters and have no known function. They are predicted to be integral membrane proteins and many of the proteins contain two copies of this domain [].; GO: 0016020 membrane

>PF08449 UAA: UAA transporter family; InterPro: IPR013657 This family includes transporters with a specificity for UDP-N-acetylglucosamine []

Probab=99.59  E-value=1.4e-13  Score=123.92  Aligned_cols=261  Identities=10%  Similarity=0.047  Sum_probs=194.9

Q ss_pred             HHHHHHHHHHHHhcC-CC--hHHHHHHHHHHHHHHHHHHHHhhhccccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 022016           20 YAVVALSTRAALLQG-MN--PRVFVVYRQAIATLFMAPMAYLSSRKYKSSSMGLRSFSLIFFIALLGVTINQNTYFEGLY   96 (304)
Q Consensus        20 ~~~~~~~~k~~~~~~-~~--p~~~~~~R~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~al~   96 (304)
                      +..+....+....++ ..  |..+++..+....+...+.....++++    .++..++.+...+++. .++..+.+.|++
T Consensus        12 ~~~~g~~qE~i~~~~~~~~~~~~lt~~q~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~-~~~~~~~~~al~   86 (303)
T PF08449_consen   12 CCSYGILQEKIMTTPYGSPFPLFLTFVQFAFNALFSFILLSLFKFPK----SRKIPLKKYAILSFLF-FLASVLSNAALK   86 (303)
T ss_pred             HHHHHHHHHHHHcCCCCCcccHHHHHHHHHHHHHHHHHHHHhccccC----CCcChHHHHHHHHHHH-HHHHHHHHHHHH
Confidence            334445566655443 44  788889998888887777655433122    2445566677788886 888999999999


Q ss_pred             ccccchhhhhcchhHHHHHHHHHHHhcccccccccccchhhhHHHHHHHhHhhhhhccCCccccccCCccccccccCCCC
Q 022016           97 LASSSMASAMGNLIPAITFVMASIVGLEKIDLGSVRSVAKILGTIFCVGGAISMALLRGPKLLNTEFLPEKSFLFRSSGG  176 (304)
Q Consensus        97 ~~~~~~a~~i~~~~Pi~~~lla~l~~~er~~~~~~~~~~~~~g~~l~~~G~~li~~~~~~~~~~~~~~~~~~~~~~~~~~  176 (304)
                      |.|...-.++-+..|+.+++++.+++|+|.+++      |+.++++..+|+++....+..+...           ++...
T Consensus        87 ~i~~p~~~~~ks~~~i~vmi~~~l~~~k~y~~~------~~~~v~li~~Gv~~~~~~~~~~~~~-----------~~~~~  149 (303)
T PF08449_consen   87 YISYPTQIVFKSSKPIPVMILGVLILGKRYSRR------QYLSVLLITIGVAIFTLSDSSSSSS-----------SNSSS  149 (303)
T ss_pred             hCChHHHHHHhhhHHHHHHHHHHHhcCccccHH------HHHHHHHHHhhHheeeecccccccc-----------ccccc
Confidence            999999999999999999999999999999999      9999999999999998532221110           01122


Q ss_pred             CchHHHHHHHHHHHHHHHHHHHhHHHHhhcCC-CchhHHHHHHHHHHHHHHHHHHh--cCCCcc--cccccCcchHHHHH
Q 022016          177 ENWLLGCLFLFASACCWSLWLILQVPVSASYP-DHLSLSAWMCFLATLQSATFAIF--TEPDPE--AWNLHSSLEIFCCF  251 (304)
Q Consensus       177 ~~~~~G~~~~l~a~~~~a~~~~~~k~~~~~~~-~~~~~~~~~~~~~~l~~~~~~~~--~~~~~~--~~~~~~~~~~~~~~  251 (304)
                      ..+..|+++.+.+.++.|.+.+.++|..++++ ++.....+...++.+...+....  .+...+  .+....+..+..++
T Consensus       150 ~~~~~G~~ll~~sl~~~a~~~~~qe~~~~~~~~~~~~~mfy~n~~~~~~~~~~~~~l~~~~~~~~~~f~~~~p~~~~~l~  229 (303)
T PF08449_consen  150 FSSALGIILLLLSLLLDAFTGVYQEKLFKKYGKSPWELMFYTNLFSLPFLLILLFLLPTGEFRSAIRFISAHPSVLLYLL  229 (303)
T ss_pred             ccchhHHHHHHHHHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHHHHhhHhhHHHHHHHHhHHHHHHHH
Confidence            23344999999999999999999999987764 67788888888988888877775  221111  12222233444444


Q ss_pred             HHHhhccchheeeeeeeecccCceeeeeccchHHHHHHHHHHHHhCCccccC
Q 022016          252 FSGAIGSGVSFCVQAWCISKRGPLFSAMFNPLCTVIVTILAALLLHEEIYTG  303 (304)
Q Consensus       252 ~~g~~~~~~~~~l~~~~~~~~~a~~~s~~~~l~pv~a~l~~~~~~~e~~~~~  303 (304)
                      ...+ .+.++.....+..++.++...+.+..+.-+.+++++.+++|++++..
T Consensus       230 ~~s~-~~~~g~~~i~~~~~~~~al~~t~v~t~Rk~~sillS~~~f~~~~~~~  280 (303)
T PF08449_consen  230 LFSL-TGALGQFFIFYLIKKFSALTTTIVTTLRKFLSILLSVIIFGHPLSPL  280 (303)
T ss_pred             HHHH-HHHHHHHHHHHHHHhcCchhhhhHHHHHHHHHHHHHHHhcCCcCChH
Confidence            4444 55666777778999999999999999999999999999999998853

; GO: 0055085 transmembrane transport

>TIGR00950 2A78 Carboxylate/Amino Acid/Amine Transporter

Probab=99.39  E-value=1.3e-11  Score=108.54  Aligned_cols=133  Identities=15%  Similarity=0.275  Sum_probs=114.6

Q ss_pred             cchHHHHHHHHHHHHHHHHHHHHHHHHhcCCCh--HHHHHHHHHHHHHHHHHHHHhhhccccCCCCCHHHHHHHHHHHHH
Q 022016            5 RDYKPAMAMLALQFSYAVVALSTRAALLQGMNP--RVFVVYRQAIATLFMAPMAYLSSRKYKSSSMGLRSFSLIFFIALL   82 (304)
Q Consensus         5 ~~~~g~~~~l~~~~~~~~~~~~~k~~~~~~~~p--~~~~~~R~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~   82 (304)
                      .+.+|.++.++++++|+...+..|...++ .++  .....+|+.++.+++.+.....++.   +..+.+++......+.+
T Consensus       125 ~~~~G~~~~l~a~~~~a~~~~~~k~~~~~-~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~---~~~~~~~~~~~~~~~~~  200 (260)
T TIGR00950       125 INPAGLLLGLGSGISFALGTVLYKRLVKK-EGPELLQFTGWVLLLGALLLLPFAWFLGPN---PQALSLQWGALLYLGLI  200 (260)
T ss_pred             ccHHHHHHHHHHHHHHHHHHHHHhHHhhc-CCchHHHHHHHHHHHHHHHHHHHHHhcCCC---CCcchHHHHHHHHHHHH
Confidence            45679999999999999999999998865 664  4555578999999888876654332   22367777778889999


Q ss_pred             HHHHHHHHHHHHhhccccchhhhhcchhHHHHHHHHHHHhcccccccccccchhhhHHHHHHHhH
Q 022016           83 GVTINQNTYFEGLYLASSSMASAMGNLIPAITFVMASIVGLEKIDLGSVRSVAKILGTIFCVGGA  147 (304)
Q Consensus        83 ~~~~~~~~~~~al~~~~~~~a~~i~~~~Pi~~~lla~l~~~er~~~~~~~~~~~~~g~~l~~~G~  147 (304)
                      +...++.++++++++.++++++.+.++.|+++.+++++++|||++..      ++.|+.+.+.|+
T Consensus       201 ~~~~~~~~~~~a~~~~~~~~~s~~~~~~pv~~~ll~~~~~~E~~~~~------~~~G~~li~~g~  259 (260)
T TIGR00950       201 GTALAYFLWNKGLTLVDPSAASILALAEPLVALLLGLLILGETLSLP------QLIGGALIIAAV  259 (260)
T ss_pred             HHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHHhCCCCCHH------HHHHHHHHHHhc
Confidence            88899999999999999999999999999999999999999999999      999999999886

>PF04142 Nuc_sug_transp: Nucleotide-sugar transporter; InterPro: IPR007271 This family of membrane proteins transport nucleotide sugars from the cytoplasm into golgi vesicles

Probab=99.29  E-value=9.8e-11  Score=101.78  Aligned_cols=218  Identities=13%  Similarity=0.102  Sum_probs=155.7

Q ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHHhhccccchhhhhcchhHHHHHHHHHHHhcccccccccccchhhhHHHHHHHhHh
Q 022016           69 GLRSFSLIFFIALLGVTINQNTYFEGLYLASSSMASAMGNLIPAITFVMASIVGLEKIDLGSVRSVAKILGTIFCVGGAI  148 (304)
Q Consensus        69 ~~~~~~~~~~~g~~~~~~~~~~~~~al~~~~~~~a~~i~~~~Pi~~~lla~l~~~er~~~~~~~~~~~~~g~~l~~~G~~  148 (304)
                      ++++...+.+.+++- .+.+.+.+.++++.+++.-.++..+..+++++++++++|+|++++      ||.++.+.+.|+.
T Consensus        13 ~~~~~~~~~vPA~lY-~~qn~L~~~al~~ld~~t~qvl~q~kIl~TAl~s~~~L~r~ls~~------qW~aL~lL~~Gv~   85 (244)
T PF04142_consen   13 SPKDTLKLAVPALLY-AIQNNLQFVALSYLDPSTFQVLSQSKILFTALFSVLLLKRRLSRR------QWLALFLLVAGVV   85 (244)
T ss_pred             hHHHHHHHHHHHHHH-HHHHHHHHHHHHhCCHHHHHHHHhhHHHHHHHHHHHHHHcccchh------hHHHHHHHHHHHh
Confidence            467788888999995 999999999999999999999999999999999999999999999      9999999999999


Q ss_pred             hhhhccCCccccccCCccccccccCCCCCchHHHHHHHHHHHHHHHHHHHhHHHHhhcCCCc-hhHHHHHHHHHHHHHHH
Q 022016          149 SMALLRGPKLLNTEFLPEKSFLFRSSGGENWLLGCLFLFASACCWSLWLILQVPVSASYPDH-LSLSAWMCFLATLQSAT  227 (304)
Q Consensus       149 li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~l~a~~~~a~~~~~~k~~~~~~~~~-~~~~~~~~~~~~l~~~~  227 (304)
                      +.-..+.+  ..++  ++++..+.+....+...|.++.++++++-++..++..|..|+.+.+ ...+......|.+...+
T Consensus        86 lv~~~~~~--~~~~--~~~~~~~~~~~~~~~~~G~~~vl~~~~~S~~agVy~E~~lK~~~~s~~~~N~qL~~~gi~~~~~  161 (244)
T PF04142_consen   86 LVQLSSSQ--SSDN--SSSSSVHHDASNQNPLLGLLAVLAAAFLSGFAGVYFEKLLKRSNVSLWIQNMQLYLFGILFNLL  161 (244)
T ss_pred             eeecCCcc--cccc--ccccccccccccchhHhHHHHHHHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHHH
Confidence            98742211  1000  0111111122355678999999999999999999999998886433 34444445555555554


Q ss_pred             HHHhcCCCc-c---cccccCcchHHHHHHHHhhccchheeeeeeeecccCceeeeeccchHHHHHHHHHHHHhCCcccc
Q 022016          228 FAIFTEPDP-E---AWNLHSSLEIFCCFFSGAIGSGVSFCVQAWCISKRGPLFSAMFNPLCTVIVTILAALLLHEEIYT  302 (304)
Q Consensus       228 ~~~~~~~~~-~---~~~~~~~~~~~~~~~~g~~~~~~~~~l~~~~~~~~~a~~~s~~~~l~pv~a~l~~~~~~~e~~~~  302 (304)
                      .....+.+. .   .+..-+...|..++.-++     +=.+....+|+.|...=+......-+.+.+.++.++|.++|.
T Consensus       162 ~~~~~~~~~~~~~g~f~G~~~~~~~~i~~~a~-----gGllva~v~KyadnI~K~fa~a~siv~t~~~s~~lf~~~~s~  235 (244)
T PF04142_consen  162 ALLLSDGSAISESGFFHGYSWWVWIVIFLQAI-----GGLLVAFVLKYADNIVKGFATAVSIVLTAVLSVLLFGFPPSL  235 (244)
T ss_pred             HHhcccccccccCCchhhcchHHHHHHHHHHH-----hhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhCCCCch
Confidence            443332211 1   111111122333333222     223445678888888888888999999999999999999985

P78382 from SWISSPROT transports CMP-sialic acid, P78381 from SWISSPROT transports UDP-galactose and Q9Y2D2 from SWISSPROT transports UDP-GlcNAc. This family has some but not complete overlap with the UDP-galactose transporter family IPR004689 from INTERPRO.; GO: 0005351 sugar:hydrogen symporter activity, 0008643 carbohydrate transport, 0000139 Golgi membrane, 0016021 integral to membrane

>PF13536 EmrE: Multidrug resistance efflux transporter

Probab=99.24  E-value=3.1e-11  Score=92.59  Aligned_cols=104  Identities=18%  Similarity=0.308  Sum_probs=86.9

Q ss_pred             HHHHHHHHHHHHHHHHhhhcccc-CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhhccccchhhhhcchhHHHHHHHHHH
Q 022016           42 VYRQAIATLFMAPMAYLSSRKYK-SSSMGLRSFSLIFFIALLGVTINQNTYFEGLYLASSSMASAMGNLIPAITFVMASI  120 (304)
Q Consensus        42 ~~R~~~a~~~l~~~~~~~~~~~~-~~~~~~~~~~~~~~~g~~~~~~~~~~~~~al~~~~~~~a~~i~~~~Pi~~~lla~l  120 (304)
                      .+|...+.+++..+...+++.+. .+..+++++.+....|.++...++.++++|+++.+ +.++.+.++.|+++.+++++
T Consensus         2 a~r~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~a~~~~~-~~v~~i~~~~pi~~~ll~~~   80 (113)
T PF13536_consen    2 AFRYLFSVLFLLIILLIRGRLRDLFRALRRKPWLWLILAGLLGFGVAYLLFFYALSYAP-ALVAAIFSLSPIFTALLSWL   80 (113)
T ss_pred             HHHHHHHHHHHHHHHHHHccHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHhCc-HHHHHHHHHHHHHHHHHHHH
Confidence            57999999988887766433211 12334566677777788886699999999999999 58999999999999999999


Q ss_pred             HhcccccccccccchhhhHHHHHHHhHhhhhh
Q 022016          121 VGLEKIDLGSVRSVAKILGTIFCVGGAISMAL  152 (304)
Q Consensus       121 ~~~er~~~~~~~~~~~~~g~~l~~~G~~li~~  152 (304)
                      ++|||++++      ++.++++++.|++++..
T Consensus        81 ~~~er~~~~------~~~a~~l~~~Gv~li~~  106 (113)
T PF13536_consen   81 FFKERLSPR------RWLAILLILIGVILIAW  106 (113)
T ss_pred             HhcCCCCHH------HHHHHHHHHHHHHHHhh
Confidence            999999999      99999999999999993

>PRK10532 threonine and homoserine efflux system; Provisional

Probab=99.22  E-value=8.1e-10  Score=99.02  Aligned_cols=136  Identities=18%  Similarity=0.184  Sum_probs=113.2

Q ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHhhhccccCCCCCHHHHHHHHHHHHHHHH
Q 022016            6 DYKPAMAMLALQFSYAVVALSTRAALLQGMNPRVFVVYRQAIATLFMAPMAYLSSRKYKSSSMGLRSFSLIFFIALLGVT   85 (304)
Q Consensus         6 ~~~g~~~~l~~~~~~~~~~~~~k~~~~~~~~p~~~~~~R~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~   85 (304)
                      +..|.++.+.++++|+...+..|...++ .++..... -..++++.+.++......  . ...+...+...+..|+++..
T Consensus       146 ~~~G~ll~l~aa~~~a~~~v~~r~~~~~-~~~~~~~~-~~~~~~~~l~~~~~~~~~--~-~~~~~~~~~~~l~lgv~~t~  220 (293)
T PRK10532        146 DLTGAALALGAGACWAIYILSGQRAGAE-HGPATVAI-GSLIAALIFVPIGALQAG--E-ALWHWSILPLGLAVAILSTA  220 (293)
T ss_pred             ChHHHHHHHHHHHHHHHHHHHHHHHhcc-CCchHHHH-HHHHHHHHHHHHHHHccC--c-ccCCHHHHHHHHHHHHHHHH
Confidence            3568999999999999999999998754 78877654 445666666666554322  1 22355666666789999989


Q ss_pred             HHHHHHHHHhhccccchhhhhcchhHHHHHHHHHHHhcccccccccccchhhhHHHHHHHhHhhhhh
Q 022016           86 INQNTYFEGLYLASSSMASAMGNLIPAITFVMASIVGLEKIDLGSVRSVAKILGTIFCVGGAISMAL  152 (304)
Q Consensus        86 ~~~~~~~~al~~~~~~~a~~i~~~~Pi~~~lla~l~~~er~~~~~~~~~~~~~g~~l~~~G~~li~~  152 (304)
                      +++.++++++++.++++++.+.+++|++..++++++++|+++..      +++|..+.+.|++....
T Consensus       221 ~~~~l~~~~~~~~~a~~as~~~~l~Pv~a~l~~~l~lgE~~~~~------~~iG~~lIl~~~~~~~~  281 (293)
T PRK10532        221 LPYSLEMIALTRLPTRTFGTLMSMEPALAAVSGMIFLGETLTLI------QWLALGAIIAASMGSTL  281 (293)
T ss_pred             HHHHHHHHHHHhcChhHHHHHHHhHHHHHHHHHHHHhCCCCcHH------HHHHHHHHHHHHHHHHh
Confidence            99999999999999999999999999999999999999999999      99999999999999974

>KOG1441 consensus Glucose-6-phosphate/phosphate and phosphoenolpyruvate/phosphate antiporter [Carbohydrate transport and metabolism; Amino acid transport and metabolism]

Probab=99.21  E-value=8.9e-12  Score=111.00  Aligned_cols=257  Identities=11%  Similarity=0.066  Sum_probs=188.0

Q ss_pred             HHHHHHHHHHHHHHHHhc-C-CChHHHHHHHHHHHHHHHHHHHHhhhccccCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Q 022016           16 LQFSYAVVALSTRAALLQ-G-MNPRVFVVYRQAIATLFMAPMAYLSSRKYKSSSMGLRSFSLIFFIALLGVTINQNTYFE   93 (304)
Q Consensus        16 ~~~~~~~~~~~~k~~~~~-~-~~p~~~~~~R~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~   93 (304)
                      ...+-.......|+.+++ + --|..++..+...+.+...........+.. +..++..+...+-.|++. +++..+-+.
T Consensus        25 w~~~~v~~~~~nK~il~~~~f~~p~~lt~~~~~~~~l~~~v~~~l~~~~~~-~~~~~~~~~~llpl~~~~-~~~~v~~n~  102 (316)
T KOG1441|consen   25 WYVLSVGVIILNKYILSKYGFPFPITLTMLHLFCGALALLVIKVLKLVPPS-KISSKLPLRTLLPLGLVF-CISHVLGNV  102 (316)
T ss_pred             HhhhheeeEEeeHhhhccCCCCCccHHHHHHHHHHHHHHHHHHHhcCCCCC-ccccccchHHHHHHHHHH-HHHHHhcch
Confidence            333334444578888873 2 347777777777777666555443322222 222456677788888886 999999999


Q ss_pred             HhhccccchhhhhcchhHHHHHHHHHHHhcccccccccccchhhhHHHHHHHhHhhhhhccCCccccccCCccccccccC
Q 022016           94 GLYLASSSMASAMGNLIPAITFVMASIVGLEKIDLGSVRSVAKILGTIFCVGGAISMALLRGPKLLNTEFLPEKSFLFRS  173 (304)
Q Consensus        94 al~~~~~~~a~~i~~~~Pi~~~lla~l~~~er~~~~~~~~~~~~~g~~l~~~G~~li~~~~~~~~~~~~~~~~~~~~~~~  173 (304)
                      |+++.+++-...+-.++|.++.++++++.+|+.++.      ....++....|+.+...                     
T Consensus       103 Sl~~v~VsF~q~iKa~~P~~tvl~~~~~~~~~~s~~------~~lsL~piv~GV~ias~---------------------  155 (316)
T KOG1441|consen  103 SLSYVPVSFYQTIKALMPPFTVLLSVLLLGKTYSSM------TYLSLLPIVFGVAIASV---------------------  155 (316)
T ss_pred             hhhccchhHHHHHHhhcchhHHHHHHHHhCCCCcce------EEEEEEEeeeeEEEeee---------------------
Confidence            999999999999999999999999999999999998      88899999999888882                     


Q ss_pred             CCCCchHHHHHHHHHHHHHHHHHHHhHHHHhh--cCC-CchhHHHHHHHHHHHHHH-HHHHhcCCCcc-cccc-cCcchH
Q 022016          174 SGGENWLLGCLFLFASACCWSLWLILQVPVSA--SYP-DHLSLSAWMCFLATLQSA-TFAIFTEPDPE-AWNL-HSSLEI  247 (304)
Q Consensus       174 ~~~~~~~~G~~~~l~a~~~~a~~~~~~k~~~~--~~~-~~~~~~~~~~~~~~l~~~-~~~~~~~~~~~-~~~~-~~~~~~  247 (304)
                      ++.+.+..|.+.+..+.+..+...++.|+..+  ++. |+.....+..-++...+. |.....+++.. .+.. .++...
T Consensus       156 ~e~~fn~~G~i~a~~s~~~~al~~I~~~~ll~~~~~~~~~~~ll~y~ap~s~~~Ll~P~~~~~~~~~~~~~~~~~~~~~~  235 (316)
T KOG1441|consen  156 TELSFNLFGFISAMISNLAFALRNILSKKLLTSKGESLNSMNLLYYTAPISLIFLLIPFLDYVEGNKFVGFLTAPWFVTF  235 (316)
T ss_pred             ccccccHHHHHHHHHHHHHHHHHHHHHHHhhhccccccCchHHHHHhhhHHHHHHhcchHhhhcccceeeeeccccchhh
Confidence            24456779999999999999999999999984  332 799999998888888888 77765554332 0011 111222


Q ss_pred             HHHHHHHhhccchheeeeeeeecccCceeeeeccchHHHHHHHHHHHHhCCcccc
Q 022016          248 FCCFFSGAIGSGVSFCVQAWCISKRGPLFSAMFNPLCTVIVTILAALLLHEEIYT  302 (304)
Q Consensus       248 ~~~~~~g~~~~~~~~~l~~~~~~~~~a~~~s~~~~l~pv~a~l~~~~~~~e~~~~  302 (304)
                      ...++..+ +...-...-+..+.+++|..-++.....-.+++..++.+|+|++|.
T Consensus       236 ~~~~~~sv-~~f~~Nls~f~~ig~tSalT~~V~g~~K~~~vi~~s~~iF~~pvt~  289 (316)
T KOG1441|consen  236 LILLLNSV-LAFLLNLSAFLVIGRTSALTYSVAGHMKRIVVIVVSWLIFGNPVTF  289 (316)
T ss_pred             HHHHHHHH-HHHHHHHHHHHHHcccCchhhhhhccceEEEEEEeEeeeecCCCch
Confidence            22233332 2222234456888999999988888888888888888888887764

>PRK11272 putative DMT superfamily transporter inner membrane protein; Provisional

Probab=99.19  E-value=6.4e-10  Score=99.62  Aligned_cols=138  Identities=16%  Similarity=0.135  Sum_probs=116.4

Q ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHhhhccccCCCCCHHHHHHHHHHHHHHHH
Q 022016            6 DYKPAMAMLALQFSYAVVALSTRAALLQGMNPRVFVVYRQAIATLFMAPMAYLSSRKYKSSSMGLRSFSLIFFIALLGVT   85 (304)
Q Consensus         6 ~~~g~~~~l~~~~~~~~~~~~~k~~~~~~~~p~~~~~~R~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~   85 (304)
                      +..|.++.++++++|+...+..|...+  -++.....++...+++.+.++....+.... ...+.+.+......++++..
T Consensus       148 ~~~G~l~~l~a~~~~a~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~i~~l~i~~s~  224 (292)
T PRK11272        148 NPWGAILILIASASWAFGSVWSSRLPL--PVGMMAGAAEMLAAGVVLLIASLLSGERLT-ALPTLSGFLALGYLAVFGSI  224 (292)
T ss_pred             chHHHHHHHHHHHHHHHHHHHHHhcCC--CcchHHHHHHHHHHHHHHHHHHHHcCCccc-ccCCHHHHHHHHHHHHHHHH
Confidence            456899999999999999999999653  345667788888888887776654332211 12356778888889999889


Q ss_pred             HHHHHHHHHhhccccchhhhhcchhHHHHHHHHHHHhcccccccccccchhhhHHHHHHHhHhhhhh
Q 022016           86 INQNTYFEGLYLASSSMASAMGNLIPAITFVMASIVGLEKIDLGSVRSVAKILGTIFCVGGAISMAL  152 (304)
Q Consensus        86 ~~~~~~~~al~~~~~~~a~~i~~~~Pi~~~lla~l~~~er~~~~~~~~~~~~~g~~l~~~G~~li~~  152 (304)
                      +++.++++++++.++++++.+.++.|++..++++++++|+++..      +++|.++.+.|+++...
T Consensus       225 ~~~~l~~~~~~~~~~~~~s~~~~l~Pi~a~i~~~~~l~E~~t~~------~iiG~~lIi~gv~~~~~  285 (292)
T PRK11272        225 IAISAYMYLLRNVRPALATSYAYVNPVVAVLLGTGLGGETLSPI------EWLALGVIVFAVVLVTL  285 (292)
T ss_pred             HHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHcCCCCcHH------HHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999      99999999999999873

>KOG2766 consensus Predicted membrane protein [Function unknown]

Probab=99.16  E-value=4.8e-12  Score=106.74  Aligned_cols=254  Identities=14%  Similarity=0.166  Sum_probs=187.2

Q ss_pred             HHHHHHHHHHHHHHHhcCCC-hHHHHHHHHHHHHHHHHHHHHhhhccccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 022016           17 QFSYAVVALSTRAALLQGMN-PRVFVVYRQAIATLFMAPMAYLSSRKYKSSSMGLRSFSLIFFIALLGVTINQNTYFEGL   95 (304)
Q Consensus        17 ~~~~~~~~~~~k~~~~~~~~-p~~~~~~R~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~al   95 (304)
                      ..+-......+.+..++|.| |....|..++.-+++.-++..+++ +..     +..|..+++++++. .=++.+...|.
T Consensus        27 SL~~t~~a~tss~la~k~iN~Pt~QtFl~Y~LLalVY~~~~~fR~-~~~-----~~~~~hYilla~~D-VEaNy~vV~Ay   99 (336)
T KOG2766|consen   27 SLLITSTAFTSSELARKGINAPTSQTFLNYVLLALVYGPIMLFRR-KYI-----KAKWRHYILLAFVD-VEANYFVVKAY   99 (336)
T ss_pred             HHHHHcchhhhHHHHhccCCCccHHHHHHHHHHHHHHhhHHHhhh-HHH-----HHHHHHhhheeEEe-ecccEEEeeeh
Confidence            33444444555555555544 777888888888888888776543 222     45566688888887 77788899999


Q ss_pred             hccccchhhhhcchhHHHHHHHHHHHhcccccccccccchhhhHHHHHHHhHhhhhhccCCccccccCCccccccccCCC
Q 022016           96 YLASSSMASAMGNLIPAITFVMASIVGLEKIDLGSVRSVAKILGTIFCVGGAISMALLRGPKLLNTEFLPEKSFLFRSSG  175 (304)
Q Consensus        96 ~~~~~~~a~~i~~~~Pi~~~lla~l~~~er~~~~~~~~~~~~~g~~l~~~G~~li~~~~~~~~~~~~~~~~~~~~~~~~~  175 (304)
                      +|++.+.+.++..-....+.+++|+++|.|-++.      |+.|.+++++|++.++.   .+....          +..+
T Consensus       100 QyTsmtSi~lLDcwaip~v~~lsw~fLktrYrlm------ki~gV~iCi~GvvmvV~---sDV~ag----------d~ag  160 (336)
T KOG2766|consen  100 QYTSMTSIMLLDCWAIPCVLVLSWFFLKTRYRLM------KISGVVICIVGVVMVVF---SDVHAG----------DRAG  160 (336)
T ss_pred             hhcchHHHHHHHHhhhHHHHHHHHHHHHHHHhhh------eeeeEEeEecceEEEEE---eeeccc----------cccC
Confidence            9999999999998888888999999999999998      99999999999999984   221111          1245


Q ss_pred             CCchHHHHHHHHHHHHHHHHHHHhHHHHhhcCCCchhHHHHHHHHHHHHHHHHHHhcCCCcccccccCcchHHHHHHHHh
Q 022016          176 GENWLLGCLFLFASACCWSLWLILQVPVSASYPDHLSLSAWMCFLATLQSATFAIFTEPDPEAWNLHSSLEIFCCFFSGA  255 (304)
Q Consensus       176 ~~~~~~G~~~~l~a~~~~a~~~~~~k~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~  255 (304)
                      +.+..+|+++.++++-+||+.++......++. |.........++|++...+-.. .+...- -...+.......+. ..
T Consensus       161 gsnp~~GD~lvi~GATlYaVSNv~EEflvkn~-d~~elm~~lgLfGaIIsaIQ~i-~~~~~~-~tl~w~~~i~~yl~-f~  236 (336)
T KOG2766|consen  161 GSNPVKGDFLVIAGATLYAVSNVSEEFLVKNA-DRVELMGFLGLFGAIISAIQFI-FERHHV-STLHWDSAIFLYLR-FA  236 (336)
T ss_pred             CCCCccCcEEEEecceeeeeccccHHHHHhcC-cHHHHHHHHHHHHHHHHHHHHh-hhccce-eeEeehHHHHHHHH-HH
Confidence            67788999999999999999999999999998 4888999999999998887744 332211 11111112222222 23


Q ss_pred             hccchheeeeeeeecccCceeeeeccchHHHHHHHHHHHHhCCcccc
Q 022016          256 IGSGVSFCVQAWCISKRGPLFSAMFNPLCTVIVTILAALLLHEEIYT  302 (304)
Q Consensus       256 ~~~~~~~~l~~~~~~~~~a~~~s~~~~l~pv~a~l~~~~~~~e~~~~  302 (304)
                      .+..+-|.+.-..+|..+++..+.-....-.+++++  ..||-+.+|
T Consensus       237 L~MFllYsl~pil~k~~~aT~~nlslLTsDmwsl~i--~~FgYhv~w  281 (336)
T KOG2766|consen  237 LTMFLLYSLAPILIKTNSATMFNLSLLTSDMWSLLI--RTFGYHVDW  281 (336)
T ss_pred             HHHHHHHHhhHHheecCCceEEEhhHhHHHHHHHHH--HHHhcchhh
Confidence            344555666778889999999999999999999988  455555554

>COG2510 Predicted membrane protein [Function unknown]

Probab=99.15  E-value=1.9e-10  Score=87.22  Aligned_cols=119  Identities=14%  Similarity=0.076  Sum_probs=102.9

Q ss_pred             HHHHHHHHHHHHHHHHHhHHHHhhcCCCchhHHHHHHHHHHHHHHHHHHhcCCCcccccccCcchHHHHHHHHhhccchh
Q 022016          182 GCLFLFASACCWSLWLILQVPVSASYPDHLSLSAWMCFLATLQSATFAIFTEPDPEAWNLHSSLEIFCCFFSGAIGSGVS  261 (304)
Q Consensus       182 G~~~~l~a~~~~a~~~~~~k~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~  261 (304)
                      -.++++++++.+++..+..|-..++. ||...+..+.......+..+....+ +++.....++..|..++..|+ .++++
T Consensus         4 ~~~~ALLsA~fa~L~~iF~KIGl~~v-dp~~At~IRtiVi~~~l~~v~~~~g-~~~~~~~~~~k~~lflilSGl-a~gls   80 (140)
T COG2510           4 AIIYALLSALFAGLTPIFAKIGLEGV-DPDFATTIRTIVILIFLLIVLLVTG-NWQAGGEIGPKSWLFLILSGL-AGGLS   80 (140)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhcccc-CccHHHHHHHHHHHHHHHHHHHhcC-ceecccccCcceehhhhHHHH-HHHHH
Confidence            45789999999999999999999888 7999999999988888877776443 443333346678888888885 89999


Q ss_pred             eeeeeeeecccCceeeeeccchHHHHHHHHHHHHhCCccccC
Q 022016          262 FCVQAWCISKRGPLFSAMFNPLCTVIVTILAALLLHEEIYTG  303 (304)
Q Consensus       262 ~~l~~~~~~~~~a~~~s~~~~l~pv~a~l~~~~~~~e~~~~~  303 (304)
                      ..+|++++|..+++++.++..+.|+++.++++++++|++|..
T Consensus        81 wl~Yf~ALk~G~as~VvPldk~svvl~~lls~lfL~E~ls~~  122 (140)
T COG2510          81 WLLYFRALKKGKASRVVPLDKTSVVLAVLLSILFLGERLSLP  122 (140)
T ss_pred             HHHHHHHHhcCCcceEEEcccccHHHHHHHHHHHhcCCCCHH
Confidence            999999999999999999999999999999999999999863

>PLN00411 nodulin MtN21 family protein; Provisional

Probab=99.10  E-value=3.5e-09  Score=97.19  Aligned_cols=136  Identities=10%  Similarity=0.067  Sum_probs=104.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhcCCChH-HHHHHHHHHHHHHHHHHHHhhhcccc---CCCCCHHHHHHHHHHHHHH
Q 022016            8 KPAMAMLALQFSYAVVALSTRAALLQGMNPR-VFVVYRQAIATLFMAPMAYLSSRKYK---SSSMGLRSFSLIFFIALLG   83 (304)
Q Consensus         8 ~g~~~~l~~~~~~~~~~~~~k~~~~~~~~p~-~~~~~R~~~a~~~l~~~~~~~~~~~~---~~~~~~~~~~~~~~~g~~~   83 (304)
                      .|.++++.++++|+...+..|...++ +++. ...++....+.+.+.+.....++...   ....+.. ....+..++. 
T Consensus       189 lG~~l~l~aa~~wa~~~il~~~~~~~-~~~~~~~t~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~-~~~i~y~~i~-  265 (358)
T PLN00411        189 IGGALLTIQGIFVSVSFILQAHIMSE-YPAAFTVSFLYTVCVSIVTSMIGLVVEKNNPSVWIIHFDIT-LITIVTMAII-  265 (358)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHH-cCcHhHHHHHHHHHHHHHHHHHHHHHccCCcccceeccchH-HHHHHHHHHH-
Confidence            47889999999999999999998766 6554 55667766666665554444332111   0112222 2234445554 


Q ss_pred             HHHHHHHHHHHhhccccchhhhhcchhHHHHHHHHHHHhcccccccccccchhhhHHHHHHHhHhhhhh
Q 022016           84 VTINQNTYFEGLYLASSSMASAMGNLIPAITFVMASIVGLEKIDLGSVRSVAKILGTIFCVGGAISMAL  152 (304)
Q Consensus        84 ~~~~~~~~~~al~~~~~~~a~~i~~~~Pi~~~lla~l~~~er~~~~~~~~~~~~~g~~l~~~G~~li~~  152 (304)
                      ..+.+.++++++++.+++.+++..++.|+++.++++++++|++++.      +++|.++.+.|+.+...
T Consensus       266 t~lay~lw~~~v~~~ga~~as~~~~L~PV~a~llg~l~LgE~lt~~------~~iG~~LIl~Gv~l~~~  328 (358)
T PLN00411        266 TSVYYVIHSWTVRHKGPLYLAIFKPLSILIAVVMGAIFLNDSLYLG------CLIGGILITLGFYAVMW  328 (358)
T ss_pred             HHHHHHHHHHHHhccCchHHHHHHhHHHHHHHHHHHHHhCCCCcHH------HHHHHHHHHHHHHHHHh
Confidence            4678999999999999999999999999999999999999999999      99999999999999874

>PF00892 EamA: EamA-like transporter family; InterPro: IPR000620 This domain is found in proteins including the Erwinia chrysanthemi PecM protein, which is involved in pectinase, cellulase and blue pigment regulation; and the Salmonella typhimurium PagO protein, the function of which is unknown

Probab=99.07  E-value=7.8e-11  Score=91.29  Aligned_cols=108  Identities=16%  Similarity=0.328  Sum_probs=92.3

Q ss_pred             HHHHHHHHhHHHHhhcCCCchhHHHHHHHHHHHHHHHHHHhcCCCcccccccCcchHHHHHHHHhhccchheeeeeeeec
Q 022016          191 CCWSLWLILQVPVSASYPDHLSLSAWMCFLATLQSATFAIFTEPDPEAWNLHSSLEIFCCFFSGAIGSGVSFCVQAWCIS  270 (304)
Q Consensus       191 ~~~a~~~~~~k~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~l~~~~~~  270 (304)
                      ++||.+.+..|+..++. |+.....+++..+.+ ..+.....+...  ....+..++....+.+.+++.+++.+++++++
T Consensus         1 ~~~a~~~~~~k~~~~~~-~~~~~~~~~~~~~~~-~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~   76 (126)
T PF00892_consen    1 FSWAIYSVFSKKLLKKI-SPLSITFWRFLIAGI-LLILLLILGRKP--FKNLSPRQWLWLLFLGLLGTALAYLLYFYALK   76 (126)
T ss_pred             ceeeeHHHHHHHHhccC-CHHHHHHHHHHHHHH-HHHHHHhhcccc--ccCCChhhhhhhhHhhccceehHHHHHHHHHH
Confidence            47899999999999998 599999999999998 666665454332  22334457788888999889999999999999


Q ss_pred             ccCceeeeeccchHHHHHHHHHHHHhCCcccc
Q 022016          271 KRGPLFSAMFNPLCTVIVTILAALLLHEEIYT  302 (304)
Q Consensus       271 ~~~a~~~s~~~~l~pv~a~l~~~~~~~e~~~~  302 (304)
                      +.+++.++.+.+++|+++.++++++++|+++.
T Consensus        77 ~~~~~~~~~~~~~~pv~~~i~~~~~~~e~~~~  108 (126)
T PF00892_consen   77 YISASIVSILQYLSPVFAAILGWLFLGERPSW  108 (126)
T ss_pred             hcchhHHHHHHHHHHHHHHHHHHHHcCCCCCH
Confidence            99999999999999999999999999999985

Many members of this family are classed as drug/metabolite transporters and have no known function. They are predicted to be integral membrane proteins and many of the proteins contain two copies of this domain [].; GO: 0016020 membrane

>PRK11689 aromatic amino acid exporter; Provisional

Probab=99.07  E-value=4e-09  Score=94.64  Aligned_cols=133  Identities=12%  Similarity=0.123  Sum_probs=105.3

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHhhhccccCCCCCHHHHHHHHHHHHHHHHH
Q 022016            7 YKPAMAMLALQFSYAVVALSTRAALLQGMNPRVFVVYRQAIATLFMAPMAYLSSRKYKSSSMGLRSFSLIFFIALLGVTI   86 (304)
Q Consensus         7 ~~g~~~~l~~~~~~~~~~~~~k~~~~~~~~p~~~~~~R~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~   86 (304)
                      ..|.++++.++++|+...+..|...++ .++.....   ..+.+.+.+.....+. .. ...+.+.+......|+ ..++
T Consensus       155 ~~G~~~~l~aa~~~A~~~v~~k~~~~~-~~~~~~~~---~~~~~~l~~~~~~~~~-~~-~~~~~~~~~~l~~~~~-~t~~  227 (295)
T PRK11689        155 PLSYGLAFIGAFIWAAYCNVTRKYARG-KNGITLFF---ILTALALWIKYFLSPQ-PA-MVFSLPAIIKLLLAAA-AMGF  227 (295)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHhhccCC-CCchhHHH---HHHHHHHHHHHHHhcC-cc-ccCCHHHHHHHHHHHH-HHHH
Confidence            458899999999999999999998644 77766432   2333333332222222 11 2346677777777775 4588


Q ss_pred             HHHHHHHHhhccccchhhhhcchhHHHHHHHHHHHhcccccccccccchhhhHHHHHHHhHhhhhh
Q 022016           87 NQNTYFEGLYLASSSMASAMGNLIPAITFVMASIVGLEKIDLGSVRSVAKILGTIFCVGGAISMAL  152 (304)
Q Consensus        87 ~~~~~~~al~~~~~~~a~~i~~~~Pi~~~lla~l~~~er~~~~~~~~~~~~~g~~l~~~G~~li~~  152 (304)
                      .+.++++++++.+++.++.+.++.|++..++++++++|+++..      +++|.++.+.|+.+...
T Consensus       228 ~~~l~~~al~~~~a~~~s~~~~l~Pv~a~i~~~~~lgE~~~~~------~~iG~~lI~~gv~~~~~  287 (295)
T PRK11689        228 GYAAWNVGILHGNMTLLATASYFTPVLSAALAALLLSTPLSFS------FWQGVAMVTAGSLLCWL  287 (295)
T ss_pred             HHHHHHHHHHccCHHHHHHHHHhHHHHHHHHHHHHhCCCCcHH------HHHHHHHHHHhHHHHhh
Confidence            9999999999999999999999999999999999999999999      99999999999988873

>KOG1444 consensus Nucleotide-sugar transporter VRG4/SQV-7 [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]

Probab=99.04  E-value=3.8e-08  Score=86.45  Aligned_cols=251  Identities=13%  Similarity=0.070  Sum_probs=183.3

Q ss_pred             HHHHHHHHHHhcCCChHHHHH--HHHHHHHHHHHHHHHhhhccccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhhccc
Q 022016           22 VVALSTRAALLQGMNPRVFVV--YRQAIATLFMAPMAYLSSRKYKSSSMGLRSFSLIFFIALLGVTINQNTYFEGLYLAS   99 (304)
Q Consensus        22 ~~~~~~k~~~~~~~~p~~~~~--~R~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~al~~~~   99 (304)
                      .+-+..|.++.+.=-|..+..  .+.+.+.+.+...- ..+--+. ++++++..+..+-..++- ......-..+++|.+
T Consensus        26 lm~vvNK~vls~y~f~~~l~l~~~Q~l~s~~~v~~lk-~~~lv~~-~~l~~~~~kk~~P~~~lf-~~~i~t~~~slk~ln  102 (314)
T KOG1444|consen   26 LMTVVNKIVLSSYNFPMGLLLMLLQSLASVLVVLVLK-RLGLVNF-RPLDLRTAKKWFPVSLLF-VGMLFTGSKSLKYLN  102 (314)
T ss_pred             HHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHH-Hhceeec-CCcChHHHHHHccHHHHH-HHHHHHccccccccC
Confidence            345678888776322333333  77777766665542 2222222 667888888777777775 777888889999999


Q ss_pred             cchhhhhcchhHHHHHHHHHHHhcccccccccccchhhhHHHHHHHhHhhhhhccCCccccccCCccccccccCCCCCch
Q 022016          100 SSMASAMGNLIPAITFVMASIVGLEKIDLGSVRSVAKILGTIFCVGGAISMALLRGPKLLNTEFLPEKSFLFRSSGGENW  179 (304)
Q Consensus       100 ~~~a~~i~~~~Pi~~~lla~l~~~er~~~~~~~~~~~~~g~~l~~~G~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  179 (304)
                      +..-+++-+..|+++.+....++|.|+++.      .+.+.....+|......   +                  +....
T Consensus       103 Vpm~tv~kn~tii~~ai~E~lf~~~~~~~~------v~~Sv~~m~~~s~~~~~---~------------------d~sf~  155 (314)
T KOG1444|consen  103 VPMFTVFKNLTIILTAIGEVLFFGKRPSNK------VWASVFAMIIGSVAAAF---T------------------DLSFN  155 (314)
T ss_pred             chHHHHHhhchHHHHHHhHHhhcCcCchhh------HHHHHHHHHHHHHhhcc---c------------------cceec
Confidence            999999999999999999999999999997      77777777777777762   2                  22334


Q ss_pred             HHHHHHHHHHHHHHHHHHHhHHHHhhcCC-CchhHHHHHHHHHHHHHHHHHHhcCC-C---cccccccCcchHHHHHHHH
Q 022016          180 LLGCLFLFASACCWSLWLILQVPVSASYP-DHLSLSAWMCFLATLQSATFAIFTEP-D---PEAWNLHSSLEIFCCFFSG  254 (304)
Q Consensus       180 ~~G~~~~l~a~~~~a~~~~~~k~~~~~~~-~~~~~~~~~~~~~~l~~~~~~~~~~~-~---~~~~~~~~~~~~~~~~~~g  254 (304)
                      ..|..+++...++-+.+.+..|+..+... +......|..+.+.........+++. +   .+.....+...+..+...+
T Consensus       156 ~~gY~w~~~n~~~~a~~~v~~kk~vd~~~l~~~~lv~yNnl~~L~~l~~~~~~~ge~~~l~~~~~~~~~~~~~~~~~lSc  235 (314)
T KOG1444|consen  156 LRGYSWALANCLTTAAFVVYVKKSVDSANLNKFGLVFYNNLLSLPPLLILSFITGELDALSLNFDNWSDSSVLVVMLLSC  235 (314)
T ss_pred             chhHHHHHHHHHHHHHHHHHHHHhhccccccceeEEeehhHHHHHHHHHHHHHhcchHHHHhhcccccchhHHHHHHHHH
Confidence            45999999999999999999999876643 56677888888888888877765542 1   1111112234566777788


Q ss_pred             hhccchheeeeeeeecccCceeeeeccchHHHHHHHHHHHHhCCccccC
Q 022016          255 AIGSGVSFCVQAWCISKRGPLFSAMFNPLCTVIVTILAALLLHEEIYTG  303 (304)
Q Consensus       255 ~~~~~~~~~l~~~~~~~~~a~~~s~~~~l~pv~a~l~~~~~~~e~~~~~  303 (304)
                      +++-++.|..+ ++.+..++...+.+....-....+...+++|++.++.
T Consensus       236 v~gf~isy~s~-~ct~~~SAtT~tivG~~n~l~t~l~~ll~~d~~~~~~  283 (314)
T KOG1444|consen  236 VMGFGISYTSF-LCTRVNSATTTTIVGAKNKLLTYLGGLLFGDKPFTFL  283 (314)
T ss_pred             HHHHHHHHHHH-HHHhhccccceeehhhhhhHHHHHHHHhcCCceechh
Confidence            87777766655 8999999999999997777777777777777777653

>PRK11453 O-acetylserine/cysteine export protein; Provisional

Probab=98.98  E-value=2.3e-08  Score=89.90  Aligned_cols=137  Identities=13%  Similarity=0.175  Sum_probs=108.3

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHhcCCCh---HHHHHHHHHHHHHHHHHHHHhhhccc-----cCCCCCHHHHHHHHH
Q 022016            7 YKPAMAMLALQFSYAVVALSTRAALLQGMNP---RVFVVYRQAIATLFMAPMAYLSSRKY-----KSSSMGLRSFSLIFF   78 (304)
Q Consensus         7 ~~g~~~~l~~~~~~~~~~~~~k~~~~~~~~p---~~~~~~R~~~a~~~l~~~~~~~~~~~-----~~~~~~~~~~~~~~~   78 (304)
                      ..|.++++.++++|+...+..|...++ .++   .....+-...+.+.+.......+...     . ...+.+.+...+.
T Consensus       142 ~~G~~l~l~aal~~a~~~v~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~l~~  219 (299)
T PRK11453        142 MLGFMLTLAAAFSWACGNIFNKKIMSH-STRPAVMSLVVWSALIPIIPFFVASLILDGSATMIHSL-VTIDMTTILSLMY  219 (299)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhcc-cCccchhHHHHHHHHHHHHHHHHHHHHhcCchhhhhhh-ccCCHHHHHHHHH
Confidence            468999999999999999999997644 332   33344444444443333322222211     1 2346788888899


Q ss_pred             HHHHHHHHHHHHHHHHhhccccchhhhhcchhHHHHHHHHHHHhcccccccccccchhhhHHHHHHHhHhhhh
Q 022016           79 IALLGVTINQNTYFEGLYLASSSMASAMGNLIPAITFVMASIVGLEKIDLGSVRSVAKILGTIFCVGGAISMA  151 (304)
Q Consensus        79 ~g~~~~~~~~~~~~~al~~~~~~~a~~i~~~~Pi~~~lla~l~~~er~~~~~~~~~~~~~g~~l~~~G~~li~  151 (304)
                      .|++...+.+.+++.++++.++++++.+..++|++..++++++++|+++..      +++|.++.+.|+.+..
T Consensus       220 l~i~~t~~~~~l~~~~l~~~~a~~~s~~~~l~Pv~a~~~~~l~lgE~~~~~------~~iG~~lI~~gv~l~~  286 (299)
T PRK11453        220 LAFVATIVGYGIWGTLLGRYETWRVAPLSLLVPVVGLASAALLLDERLTGL------QFLGAVLIMAGLYINV  286 (299)
T ss_pred             HHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHhCCCccHH------HHHHHHHHHHHHHHHh
Confidence            999999999999999999999999999999999999999999999999999      9999999999998876

>KOG2234 consensus Predicted UDP-galactose transporter [Carbohydrate transport and metabolism]

Probab=98.97  E-value=3.9e-07  Score=81.27  Aligned_cols=273  Identities=13%  Similarity=0.131  Sum_probs=189.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhcC---CChHHHHHHHHHHHHHHHHHHHHhhhcc--c-cCCCC------CHHHHHH
Q 022016            8 KPAMAMLALQFSYAVVALSTRAALLQG---MNPRVFVVYRQAIATLFMAPMAYLSSRK--Y-KSSSM------GLRSFSL   75 (304)
Q Consensus         8 ~g~~~~l~~~~~~~~~~~~~k~~~~~~---~~p~~~~~~R~~~a~~~l~~~~~~~~~~--~-~~~~~------~~~~~~~   75 (304)
                      .-++.++.....++......|+.-..+   +.|...++.-..+-.++...+.+...++  + ..+++      .+++...
T Consensus        15 ~k~~~l~~~t~~~~~l~l~l~ys~~~~~~~f~~tt~v~~~Ei~Kl~~c~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~lk   94 (345)
T KOG2234|consen   15 MKYLSLIVLTAQNTALTLLLRYSRTREKPMFLPTTAVFLTEVIKLVFCLFLLLFEERKYAKKSLKSLSKEILAAPRETLK   94 (345)
T ss_pred             HHHHHHHHHHHHHhhHHHHHHHHhcCCCCCcchhHHHHHHHHHHHHHHHHHHHHHhhHHhhhhhhhcCHHHHhChHHHHH
Confidence            346667778899999999999987655   7788888888888888777766654322  1 11222      3556667


Q ss_pred             HHHHHHHHHHHHHHHHHHHhhccccchhhhhcchhHHHHHHHHHHHhcccccccccccchhhhHHHHHHHhHhhhhhccC
Q 022016           76 IFFIALLGVTINQNTYFEGLYLASSSMASAMGNLIPAITFVMASIVGLEKIDLGSVRSVAKILGTIFCVGGAISMALLRG  155 (304)
Q Consensus        76 ~~~~g~~~~~~~~~~~~~al~~~~~~~a~~i~~~~Pi~~~lla~l~~~er~~~~~~~~~~~~~g~~l~~~G~~li~~~~~  155 (304)
                      ..+.+++- .+.+.++|.++++.+++.-++...+--+.|+++..+++++|.+++      ||.++++-..|+.++-.   
T Consensus        95 ~~vPa~iY-alqNnl~yval~~ldaatyqVt~qlKI~tTA~f~vl~L~rkLs~~------Qw~Al~lL~~Gv~~vQ~---  164 (345)
T KOG2234|consen   95 VSVPALIY-ALQNNLQYVALSNLDAATYQVTYQLKILTTAIFSVLILRRKLSRL------QWMALVLLFAGVALVQL---  164 (345)
T ss_pred             HHHHHHHH-HHhhhHHHHHHhcCCchhhhhhhhHHHHHHHHHHHHHHhhhhhHH------HHHHHHHHHHHHHHHhc---
Confidence            77788885 888889999999999999999999999999999999999999999      99999999999999873   


Q ss_pred             CccccccCCccccccccCCCCCchHHHHHHHHHHHHHHHHHHHhHHHHhhcCCCchhHHHHHH-HHHHHHHHHHHHhcCC
Q 022016          156 PKLLNTEFLPEKSFLFRSSGGENWLLGCLFLFASACCWSLWLILQVPVSASYPDHLSLSAWMC-FLATLQSATFAIFTEP  234 (304)
Q Consensus       156 ~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~l~a~~~~a~~~~~~k~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~~~~~  234 (304)
                      ++.+.+     ++.  .....++...|....+.++++-++..++..|..|+...+..+--.++ ++|.+......+..+.
T Consensus       165 ~~~~~~-----~a~--~~~~~~n~~~G~~avl~~c~~SgfAgvYfEkiLK~s~~s~wi~NiqL~~~g~~f~~l~~~~~d~  237 (345)
T KOG2234|consen  165 PSLSPT-----GAK--SESSAQNPFLGLVAVLVACFLSGFAGVYFEKILKGSNVSLWIRNIQLYFFGILFNLLTILLQDG  237 (345)
T ss_pred             cCCCCC-----Ccc--CCCcccchhhhHHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHHhhccc
Confidence            221110     000  02456778899999999999999999999999877543444444444 4444444333332322


Q ss_pred             Ccc---c-ccccCcchHHHHHHHHhhccchheeeeeeeecccCceeeeeccchHHHHHHHHHHHHhCCcccc
Q 022016          235 DPE---A-WNLHSSLEIFCCFFSGAIGSGVSFCVQAWCISKRGPLFSAMFNPLCTVIVTILAALLLHEEIYT  302 (304)
Q Consensus       235 ~~~---~-~~~~~~~~~~~~~~~g~~~~~~~~~l~~~~~~~~~a~~~s~~~~l~pv~a~l~~~~~~~e~~~~  302 (304)
                      +.-   + +...+...|..++.-+..+     .+-...+|+.|-..=+-...+.-+++.+.++.++|-++|.
T Consensus       238 ~~i~~~gff~G~s~~vw~vVl~~a~gG-----Llvs~v~KyADnIlK~f~~s~aiilt~v~S~~Lf~~~~t~  304 (345)
T KOG2234|consen  238 EAINEYGFFYGYSSIVWLVVLLNAVGG-----LLVSLVMKYADNILKGFSTSVAIILTTVASIALFDFQLTL  304 (345)
T ss_pred             cccccCCccccccHHHHHHHHHHhccc-----hhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHccCCchH
Confidence            111   1 1111222344444444422     3444556676666656666678888888888888888764

>TIGR03340 phn_DUF6 phosphonate utilization associated putative membrane protein

Probab=98.94  E-value=9.9e-09  Score=91.41  Aligned_cols=136  Identities=14%  Similarity=0.014  Sum_probs=96.6

Q ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHHhcCCChH----HHHHHHHHHHHHHHHHHHHhhhccccCCCCCHHHHHHHHHHHH
Q 022016            6 DYKPAMAMLALQFSYAVVALSTRAALLQGMNPR----VFVVYRQAIATLFMAPMAYLSSRKYKSSSMGLRSFSLIFFIAL   81 (304)
Q Consensus         6 ~~~g~~~~l~~~~~~~~~~~~~k~~~~~~~~p~----~~~~~R~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~   81 (304)
                      +.++....+.++++|+...+..|...++ .+|.    ....+.....++.+.+.....+++.  ...+.+.+......+.
T Consensus       142 ~~~g~~~~l~aal~~a~~~i~~k~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~  218 (281)
T TIGR03340       142 RRKAYAWALAAALGTAIYSLSDKAAALG-VPAFYSALGYLGIGFLAMGWPFLLLYLKRHGRS--MFPYARQILPSATLGG  218 (281)
T ss_pred             chhHHHHHHHHHHHHHHhhhhccccccc-hhcccccHHHHHHHHHHHHHHHHHHHHHHhccc--hhhhHHHHHHHHHHHH
Confidence            3467778899999999999999876432 4443    2233333333222222221111111  1112234445556666


Q ss_pred             HHHHHHHHHHHHHhhccccchhhhhcchhHHHHHHHHHHHhcccccccccccchhhhHHHHHHHhHhhh
Q 022016           82 LGVTINQNTYFEGLYLASSSMASAMGNLIPAITFVMASIVGLEKIDLGSVRSVAKILGTIFCVGGAISM  150 (304)
Q Consensus        82 ~~~~~~~~~~~~al~~~~~~~a~~i~~~~Pi~~~lla~l~~~er~~~~~~~~~~~~~g~~l~~~G~~li  150 (304)
                      +...+++.++++++++.+++.++.+.+++|++..+++++++||++++.      +++|..+.+.|+.++
T Consensus       219 ~~s~l~~~l~~~al~~~~a~~~~~~~~l~pv~a~l~g~~~lgE~~~~~------~~iG~~lil~Gv~l~  281 (281)
T TIGR03340       219 LMIGGAYALVLWAMTRLPVATVVALRNTSIVFAVVLGIWFLNERWYLT------RLMGVCIIVAGLVVL  281 (281)
T ss_pred             HHHHHHHHHHHHHHhhCCceEEEeecccHHHHHHHHHHHHhCCCccHH------HHHHHHHHHHhHHhC
Confidence            666899999999999999999999999999999999999999999999      999999999998763

This family of hydrophobic proteins has some homology to families of integral membrane proteins such as (pfam00892) and may be a permease. It occurs in the vicinity of various types of operons for the catabolism of phosphonates in Vibrio, Pseudomonas, Polaromonas and Thiomicrospira.

>KOG1580 consensus UDP-galactose transporter related protein [Carbohydrate transport and metabolism]

Probab=98.93  E-value=8.7e-09  Score=86.28  Aligned_cols=240  Identities=13%  Similarity=0.104  Sum_probs=181.6

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHhhhccccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhhccccchhhhhcchhHHHHHH
Q 022016           37 PRVFVVYRQAIATLFMAPMAYLSSRKYKSSSMGLRSFSLIFFIALLGVTINQNTYFEGLYLASSSMASAMGNLIPAITFV  116 (304)
Q Consensus        37 p~~~~~~R~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~al~~~~~~~a~~i~~~~Pi~~~l  116 (304)
                      ....+++++..-.++-=.+..++ ++   .+.++...+.+...++. +.+.....+.|+++.|=....+--+.-|+=+++
T Consensus        53 alaLVf~qC~~N~vfAkvl~~ir-~~---~~~D~t~~~~YaAcs~s-YLlAMVssN~Alq~vpYPTqVlgKScKPIPVMi  127 (337)
T KOG1580|consen   53 ALALVFFQCTANTVFAKVLFLIR-KK---TEIDNTPTKMYAACSAS-YLLAMVSSNQALQYVPYPTQVLGKSCKPIPVMI  127 (337)
T ss_pred             HHHHHHHHHHHHHHHHHhheeec-cc---ccccCCcchHHHHHHHH-HHHHHHhccchhcccCCcHHHhcccCCCcceee
Confidence            34455566555555433332222 21   22344444445544444 477888999999999988888888999999999


Q ss_pred             HHHHHhcccccccccccchhhhHHHHHHHhHhhhhhccCCccccccCCccccccccCCCCCchHHHHHHHHHHHHHHHHH
Q 022016          117 MASIVGLEKIDLGSVRSVAKILGTIFCVGGAISMALLRGPKLLNTEFLPEKSFLFRSSGGENWLLGCLFLFASACCWSLW  196 (304)
Q Consensus       117 la~l~~~er~~~~~~~~~~~~~g~~l~~~G~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~l~a~~~~a~~  196 (304)
                      ++.++.+.+.+|+      +..-.++.++|+++.....+.              .++.++.....|.++.+++-..-++.
T Consensus       128 lGVl~~~KsY~w~------kY~cVL~IV~GValFmYK~~K--------------v~g~e~~t~g~GElLL~lSL~mDGlT  187 (337)
T KOG1580|consen  128 LGVLFAHKSYHWR------KYCCVLMIVVGVALFMYKENK--------------VGGAEDKTFGFGELLLILSLAMDGLT  187 (337)
T ss_pred             eehhhhcccccHH------HHHHHHHHHHHHHHhhccccc--------------cCCCcccccchHHHHHHHHHHhcccc
Confidence            9999999999999      999999999999999852211              12345667789999999998888999


Q ss_pred             HHhHHHHhhcCC-CchhHHHHHHHHHHHHHHHHHHhcCCCcc--cccccCcchHHHHHHHHhhccchheeeeeeeecccC
Q 022016          197 LILQVPVSASYP-DHLSLSAWMCFLATLQSATFAIFTEPDPE--AWNLHSSLEIFCCFFSGAIGSGVSFCVQAWCISKRG  273 (304)
Q Consensus       197 ~~~~k~~~~~~~-~~~~~~~~~~~~~~l~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~g~~~~~~~~~l~~~~~~~~~  273 (304)
                      ...+.|..+++. ...+...+..+.+.+.+....++++.-++  .+....|..|+-+...++ ++.+++.+.+.-+...+
T Consensus       188 g~~Qdrira~yq~~g~~MM~~~NlwStL~Lg~g~lfTGElweF~yF~~RhP~~~~~l~l~ai-~s~LGQ~fIF~tv~~Fg  266 (337)
T KOG1580|consen  188 GSIQDRIRASYQRTGTSMMFYTNLWSTLYLGAGLLFTGELWEFFYFVQRHPYVFWDLTLLAI-ASCLGQWFIFKTVEEFG  266 (337)
T ss_pred             hhHHHHHHHhhccCchhhHHHHHHHHHHHhhhhheehhhHHHHHHHHHhccHHHHHHHHHHH-HHHhhhHHHHHHHHHhC
Confidence            999988877653 57777888888888888776665553333  233344556777777777 78899999999999999


Q ss_pred             ceeeeeccchHHHHHHHHHHHHhCCcccc
Q 022016          274 PLFSAMFNPLCTVIVTILAALLLHEEIYT  302 (304)
Q Consensus       274 a~~~s~~~~l~pv~a~l~~~~~~~e~~~~  302 (304)
                      +-..|++....-.++++++.++++++++-
T Consensus       267 PLtCSivTTTRKfFTil~SVllf~npls~  295 (337)
T KOG1580|consen  267 PLTCSIVTTTRKFFTILISVLLFNNPLSG  295 (337)
T ss_pred             CeeEEEEeehHHHHHHHHHHHHhcCcCcH
Confidence            99999999999999999999999999863

>TIGR00817 tpt Tpt phosphate/phosphoenolpyruvate translocator

Probab=98.88  E-value=1.7e-08  Score=90.77  Aligned_cols=140  Identities=11%  Similarity=0.152  Sum_probs=107.8

Q ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHHhc-CCChHHHHHHHHHHHHHHHHHHHHhhhccccCC-C-------CCHHHHHH-
Q 022016            6 DYKPAMAMLALQFSYAVVALSTRAALLQ-GMNPRVFVVYRQAIATLFMAPMAYLSSRKYKSS-S-------MGLRSFSL-   75 (304)
Q Consensus         6 ~~~g~~~~l~~~~~~~~~~~~~k~~~~~-~~~p~~~~~~R~~~a~~~l~~~~~~~~~~~~~~-~-------~~~~~~~~-   75 (304)
                      +..|.++++++++.|+...+..|...++ ++||..+..+....+.+.+.|+....+.....+ .       ........ 
T Consensus       143 ~~~G~~~~l~a~~~~a~~~v~~k~~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  222 (302)
T TIGR00817       143 NWAGFLSAMISNITFVSRNIFSKKAMTIKSLDKTNLYAYISIMSLFLLSPPAFITEGPPFLPHGFMQAISGVNVTKIYTV  222 (302)
T ss_pred             cHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCcccHHHHHHHHHHHHHHHHHHHHcchHHHHHHHHHhhcccCchHHHHH
Confidence            4568999999999999999999998752 399999999999999999888876543211100 0       00011111 


Q ss_pred             HHHHHHHHHHHHHHHHHHHhhccccchhhhhcchhHHHHHHHHHHHhcccccccccccchhhhHHHHHHHhHhhhh
Q 022016           76 IFFIALLGVTINQNTYFEGLYLASSSMASAMGNLIPAITFVMASIVGLEKIDLGSVRSVAKILGTIFCVGGAISMA  151 (304)
Q Consensus        76 ~~~~g~~~~~~~~~~~~~al~~~~~~~a~~i~~~~Pi~~~lla~l~~~er~~~~~~~~~~~~~g~~l~~~G~~li~  151 (304)
                      ....+.......+.+++.+++++++..+++.....|++++++++++++|+++..      +++|.++.+.|+.+..
T Consensus       223 ~~~~~~~~~~~~~~~~~~~l~~~sa~t~sv~~~l~pv~~~~~~~~~lge~lt~~------~~~G~~lil~Gv~l~~  292 (302)
T TIGR00817       223 SLVAAMGFFHFYQQVAFMLLGRVSPLTHSVGNCMKRVVVIVVSILFFGTKISPQ------QVFGTGIAIAGVFLYS  292 (302)
T ss_pred             HHHHHHHHHHHHHHHHHHHHccCCchHHHHHhhhhhhheeeeehhhcCCCCchh------HHHHHHHHHHHHHHHH
Confidence            222233223344467778999999999999999999999999999999999999      9999999999999887

specificities overlap.

>KOG1443 consensus Predicted integral membrane protein [Function unknown]

Probab=98.87  E-value=1.5e-07  Score=81.82  Aligned_cols=237  Identities=13%  Similarity=0.103  Sum_probs=162.5

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHhhhcccc--CCCCCHHHHHHHH-HHHHHHHHHHHHHHHHHhhccccchhhhhcchhHHH
Q 022016           37 PRVFVVYRQAIATLFMAPMAYLSSRKYK--SSSMGLRSFSLIF-FIALLGVTINQNTYFEGLYLASSSMASAMGNLIPAI  113 (304)
Q Consensus        37 p~~~~~~R~~~a~~~l~~~~~~~~~~~~--~~~~~~~~~~~~~-~~g~~~~~~~~~~~~~al~~~~~~~a~~i~~~~Pi~  113 (304)
                      |..++...+++-..+.......++++..  +-..++++..+-. -.|+.+ +..-.+.+.+++|++.+.-++.-+..++|
T Consensus        45 PLf~ts~h~~v~flfa~~~~~l~~~~~~r~r~~~sw~~~Lr~~aPtalat-a~DIGLSN~sl~yVtlSlYTM~KSSsi~F  123 (349)
T KOG1443|consen   45 PLFVTSLHLAVKFLFAALSRRLYQCSVPRARVVLSWRDYLRRLAPTALAT-ALDIGLSNWSLEYVTLSLYTMTKSSSILF  123 (349)
T ss_pred             chHHHHHHHHHHHHHHHHHHHHHhccCCccccCCcHHHHHHHhhhhhhhh-hcccccccceeeeeeeeeeeeccccHHHH
Confidence            7777777777666655444333332221  1245666655444 445554 88999999999999999999999999999


Q ss_pred             HHHHHHHHhcccccccccccchhhhHHHHHHHhHhhhhhccCCccccccCCccccccccCCCCCchHHHHHHHHHHHHHH
Q 022016          114 TFVMASIVGLEKIDLGSVRSVAKILGTIFCVGGAISMALLRGPKLLNTEFLPEKSFLFRSSGGENWLLGCLFLFASACCW  193 (304)
Q Consensus       114 ~~lla~l~~~er~~~~~~~~~~~~~g~~l~~~G~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~l~a~~~~  193 (304)
                      +.+++.++.-||++|.      -..-+.+..+|+++...                     .+.+....|..+..+++++-
T Consensus       124 IllFs~if~lEk~~w~------L~l~v~lI~~Glflft~---------------------KsTqf~i~Gf~lv~~aS~~s  176 (349)
T KOG1443|consen  124 ILLFSLIFKLEKFRWA------LVLIVLLIAVGLFLFTY---------------------KSTQFNIEGFFLVLAASLLS  176 (349)
T ss_pred             HHHHHHHHHhHHHHHH------HHHHHHHHhhheeEEEe---------------------cccceeehhHHHHHHHHHhh
Confidence            9999999999999996      55555555566666662                     24556778999998888887


Q ss_pred             HHHHHhHHHHhhcCC----CchhHHHHHHHHHHHHHHHHHHhcCCCcc-----cccccCcch-HHHHHHHHhhccchhee
Q 022016          194 SLWLILQVPVSASYP----DHLSLSAWMCFLATLQSATFAIFTEPDPE-----AWNLHSSLE-IFCCFFSGAIGSGVSFC  263 (304)
Q Consensus       194 a~~~~~~k~~~~~~~----~~~~~~~~~~~~~~l~~~~~~~~~~~~~~-----~~~~~~~~~-~~~~~~~g~~~~~~~~~  263 (304)
                      ++--...+...++.|    ||........-...+.+.|..+..|+...     .+...+... +..+...++ +..+++.
T Consensus       177 GlRW~~tQ~ll~~~~~~~~~P~~ti~~l~p~M~~~Ll~~~l~fEG~~~~~~s~~f~~~d~~~~~rv~g~i~l-~g~laF~  255 (349)
T KOG1443|consen  177 GLRWAFTQMLLRNQPSAKRNPIDTIFHLQPWMSIGLLPLSLLFEGLHLITSSSIFRFQDTGLILRVIGLISL-GGLLAFL  255 (349)
T ss_pred             hhhHHHHHHHHhcCccccCCCeeeHHHhhhHHHHHHHHHHHHHcccccchhhhHHHhcCccHHHHHHHHHHH-HHHHHHH
Confidence            777777766665543    67777777776777777777776765422     222223222 222233333 3333333


Q ss_pred             ee---eeeecccCceeeeeccchHHHHHHHHHHHHhCCcccc
Q 022016          264 VQ---AWCISKRGPLFSAMFNPLCTVIVTILAALLLHEEIYT  302 (304)
Q Consensus       264 l~---~~~~~~~~a~~~s~~~~l~pv~a~l~~~~~~~e~~~~  302 (304)
                      +-   +--+.+++.-..+...-..-+...+++..+.+|+++.
T Consensus       256 l~~sEflLl~~Ts~ltlSIaGI~Kel~tl~la~ii~~d~ls~  297 (349)
T KOG1443|consen  256 LEFSEFLLLSRTSSLTLSIAGIVKEVCTLLLAIIILKDQLSL  297 (349)
T ss_pred             HHHHHHheeeeccceeeeHHHHHHHHHHHHHHHHHhhcchhh
Confidence            32   3556788888889999999999999999999999874

>PF06800 Sugar_transport: Sugar transport protein; InterPro: IPR010651 This is a family of bacterial sugar transporters approximately 300 residues long

Probab=98.87  E-value=8.3e-08  Score=83.61  Aligned_cols=234  Identities=15%  Similarity=0.128  Sum_probs=150.7

Q ss_pred             ChHHHHHHHHHHHHHHHHHHHHhhhccccCCCCC--HHHHHHHHHHHHHHHHHHHHHHHHHhhccccchhhhhcch-hHH
Q 022016           36 NPRVFVVYRQAIATLFMAPMAYLSSRKYKSSSMG--LRSFSLIFFIALLGVTINQNTYFEGLYLASSSMASAMGNL-IPA  112 (304)
Q Consensus        36 ~p~~~~~~R~~~a~~~l~~~~~~~~~~~~~~~~~--~~~~~~~~~~g~~~~~~~~~~~~~al~~~~~~~a~~i~~~-~Pi  112 (304)
                      +|.+-.+--...+.++-+....+ .+    |..+  .+.+...++.|++- .+++...+.|.++.+++.+-.+..- +-+
T Consensus        11 ~~~~Q~lG~t~Gali~alv~~~~-~~----p~~~~~~~~~~~~~lsG~~W-~iGq~~qf~s~~~~GVS~tmPiStg~QLv   84 (269)
T PF06800_consen   11 KPANQILGTTIGALIFALVVFLF-RQ----PAFSMSGTSFIVAFLSGAFW-AIGQIGQFKSFKKIGVSKTMPISTGLQLV   84 (269)
T ss_pred             cHHHHHHHHHHHHHHHHHHHHHH-hC----CCcchHHHHHHHHHHHHHHH-HHHHHHHHHHHHHhcceeeeccchhHHHH
Confidence            45554444444444433333322 23    3344  47788888888886 9999999999999999999999964 446


Q ss_pred             HHHHHHHHHhcccccccccccchhhhHHHHHHHhHhhhhhccCCccccccCCccccccccCCCCCchHHHHHHHHHHHHH
Q 022016          113 ITFVMASIVGLEKIDLGSVRSVAKILGTIFCVGGAISMALLRGPKLLNTEFLPEKSFLFRSSGGENWLLGCLFLFASACC  192 (304)
Q Consensus       113 ~~~lla~l~~~er~~~~~~~~~~~~~g~~l~~~G~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~l~a~~~  192 (304)
                      .+.+.+.++++|--+..  .-..-..++++.++|+.+....+.++         +    +.++.++..+|....+++++.
T Consensus        85 g~sl~gv~~fgEW~~~~--~~~~G~~Al~liiiGv~lts~~~~~~---------~----~~~~~~~~~kgi~~Ll~stig  149 (269)
T PF06800_consen   85 GTSLIGVLFFGEWTTTT--QKIIGFLALVLIIIGVILTSYQDKKS---------D----KSSSKSNMKKGILALLISTIG  149 (269)
T ss_pred             HHHHHHHhhcCCCCCcc--hHHHHHHHHHHHHHHHHHhccccccc---------c----ccccccchhhHHHHHHHHHHH
Confidence            78899999999988766  00112346777788888777321110         0    012345677899999999999


Q ss_pred             HHHHHHhHHHHhhcCCCchhHHHHHHHHHHHHHHHHHHhcCCCcccccccCcchHHHHHHHHhhccchheeeeeeeeccc
Q 022016          193 WSLWLILQVPVSASYPDHLSLSAWMCFLATLQSATFAIFTEPDPEAWNLHSSLEIFCCFFSGAIGSGVSFCVQAWCISKR  272 (304)
Q Consensus       193 ~a~~~~~~k~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~l~~~~~~~~  272 (304)
                      |..|....|..  +. |+.....-+...-.+...++....+ +. .+.   +..|.- +..|+ .-.++..+|..+.++.
T Consensus       150 y~~Y~~~~~~~--~~-~~~~~~lPqaiGm~i~a~i~~~~~~-~~-~~~---k~~~~n-il~G~-~w~ignl~~~is~~~~  219 (269)
T PF06800_consen  150 YWIYSVIPKAF--HV-SGWSAFLPQAIGMLIGAFIFNLFSK-KP-FFE---KKSWKN-ILTGL-IWGIGNLFYLISAQKN  219 (269)
T ss_pred             HHHHHHHHHhc--CC-ChhHhHHHHHHHHHHHHHHHhhccc-cc-ccc---cchHHh-hHHHH-HHHHHHHHHHHhHHhc
Confidence            99999997764  23 3554444332222222222222121 11 111   112222 22333 2345667788999999


Q ss_pred             CceeeeeccchHHHHHHHHHHHHhCCcc
Q 022016          273 GPLFSAMFNPLCTVIVTILAALLLHEEI  300 (304)
Q Consensus       273 ~a~~~s~~~~l~pv~a~l~~~~~~~e~~  300 (304)
                      |.+.+=.+.-+.++++.+.+.+++||+=
T Consensus       220 G~a~af~lSQ~~vvIStlgGI~il~E~K  247 (269)
T PF06800_consen  220 GVATAFTLSQLGVVISTLGGIFILKEKK  247 (269)
T ss_pred             cchhhhhHHhHHHHHHHhhhheEEEecC
Confidence            9999999999999999999999999973

Members include glucose uptake proteins [], ribose transport proteins, and several putative and hypothetical membrane proteins probably involved in sugar transport across bacterial membranes.; GO: 0015144 carbohydrate transmembrane transporter activity, 0034219 carbohydrate transmembrane transport, 0016021 integral to membrane

>PF03151 TPT: Triose-phosphate Transporter family; InterPro: IPR004853 This family consists entirely of aligned regions from Drosophila melanogaster proteins

Probab=98.79  E-value=2e-07  Score=75.12  Aligned_cols=134  Identities=21%  Similarity=0.267  Sum_probs=113.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhc------CCChHHHHHHHHHHHHHHHHHHHHhhhccccCC--------CC--CHHH
Q 022016            9 PAMAMLALQFSYAVVALSTRAALLQ------GMNPRVFVVYRQAIATLFMAPMAYLSSRKYKSS--------SM--GLRS   72 (304)
Q Consensus         9 g~~~~l~~~~~~~~~~~~~k~~~~~------~~~p~~~~~~R~~~a~~~l~~~~~~~~~~~~~~--------~~--~~~~   72 (304)
                      |.++++.+.++.+...+..|...++      +.++.+...+-...+.+.+.+.....+..+..+        +.  +.+.
T Consensus         1 G~~~~l~s~~~~al~~v~~~~~~~~~~~~~~~~~~~~l~~~~~~~s~~~l~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~   80 (153)
T PF03151_consen    1 GFILALASSLFSALRNVLIKKLLKKVSSNSKKLNPLNLLYYNSPISFIILLPLAFLLEGPQLSSFFSEIFGEELSSDPNF   80 (153)
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHhcccccccCCCHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHhhhhhhcchHHH
Confidence            4678899999999999999998776      599999999999999999999887765533100        01  2244


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhccccchhhhhcchhHHHHHHHHHHHhcccccccccccchhhhHHHHHHHhHhh
Q 022016           73 FSLIFFIALLGVTINQNTYFEGLYLASSSMASAMGNLIPAITFVMASIVGLEKIDLGSVRSVAKILGTIFCVGGAIS  149 (304)
Q Consensus        73 ~~~~~~~g~~~~~~~~~~~~~al~~~~~~~a~~i~~~~Pi~~~lla~l~~~er~~~~~~~~~~~~~g~~l~~~G~~l  149 (304)
                      +......|++. ...+...+..++++++...++....-.+.+.++++++++|+++..      ++.|+.+++.|.++
T Consensus        81 ~~~~~~~~~~~-~~~n~~~f~~i~~tS~lt~~v~~~~K~~~~i~~s~~~f~~~~t~~------~~~G~~l~~~G~~~  150 (153)
T PF03151_consen   81 IFLLILSGLLA-FLYNLSSFLLIKLTSPLTYSVLGNVKRILVILLSVIFFGEPITPL------QIIGIVLALVGVLL  150 (153)
T ss_pred             HHHHHHHHHHH-HHHHHHHHHHhhhcChhHHHHHHHHHHHHHHHHHhhhcCCcCCHH------HHHHHHHHHHHHhe
Confidence            55555666666 788999999999999999999999999999999999999999999      99999999999875

O49724 from SWISSPROT contains three repeats of this region. In other proteins, the aligned region is located towards the C terminus. The function of the aligned region is unknown.

>KOG1581 consensus UDP-galactose transporter related protein [Carbohydrate transport and metabolism]

Probab=98.79  E-value=1e-06  Score=76.76  Aligned_cols=243  Identities=14%  Similarity=0.114  Sum_probs=180.2

Q ss_pred             ChHHHHHHHHHHHHHHHHHHHHhhhccccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhhccccchhhhhcchhHHHHH
Q 022016           36 NPRVFVVYRQAIATLFMAPMAYLSSRKYKSSSMGLRSFSLIFFIALLGVTINQNTYFEGLYLASSSMASAMGNLIPAITF  115 (304)
Q Consensus        36 ~p~~~~~~R~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~al~~~~~~~a~~i~~~~Pi~~~  115 (304)
                      ++....+.+-+.+.++-..+..++++ +   ...++.+..+...++.+ .+...|.++|++|.+=..-.+--+.--+=++
T Consensus        50 ~~~fL~~~q~l~~~~~s~~~l~~~k~-~---~~~~apl~~y~~is~tn-~~s~~~~yeaLKyvSyPtq~LaKscKmIPVm  124 (327)
T KOG1581|consen   50 HSLFLVFCQRLVALLVSYAMLKWWKK-E---LSGVAPLYKYSLISFTN-TLSSWCGYEALKYVSYPTQTLAKSCKMIPVM  124 (327)
T ss_pred             ccHHHHHHHHHHHHHHHHHHHhcccc-c---CCCCCchhHHhHHHHHh-hcchHHHHHHHHhccchHHHHHHHhhhhHHH
Confidence            46677777777777776555443222 2   23467788888889888 8999999999999996655555555555667


Q ss_pred             HHHHHHhcccccccccccchhhhHHHHHHHhHhhhhhccCCccccccCCccccccccCCCCCchHHHHHHHHHHHHHHHH
Q 022016          116 VMASIVGLEKIDLGSVRSVAKILGTIFCVGGAISMALLRGPKLLNTEFLPEKSFLFRSSGGENWLLGCLFLFASACCWSL  195 (304)
Q Consensus       116 lla~l~~~er~~~~~~~~~~~~~g~~l~~~G~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~l~a~~~~a~  195 (304)
                      ++..++.|.|.+..      +.+-..+.-+|+-+..+....+            .....+.++...|..+....-..=++
T Consensus       125 lmg~Lvy~~ky~~~------eYl~~~LIs~GvsiF~l~~~s~------------s~~~~g~~ns~~G~~Ll~~~L~fDgf  186 (327)
T KOG1581|consen  125 LMGTLVYGRKYSSF------EYLVAFLISLGVSIFSLFPNSD------------SSSKSGRENSPIGILLLFGYLLFDGF  186 (327)
T ss_pred             HHHHHHhcCccCcH------HHHHHHHHHhheeeEEEecCCC------------CccccCCCCchHhHHHHHHHHHHHhh
Confidence            89999999999998      9988888888888877532111            00123456788999999888888888


Q ss_pred             HHHhHHHHhhcCC-CchhHHHHHHHHHHHHHHHHHHhcCCCcc--cccccCcchHHHHHHHHhhccchheeeeeeeeccc
Q 022016          196 WLILQVPVSASYP-DHLSLSAWMCFLATLQSATFAIFTEPDPE--AWNLHSSLEIFCCFFSGAIGSGVSFCVQAWCISKR  272 (304)
Q Consensus       196 ~~~~~k~~~~~~~-~~~~~~~~~~~~~~l~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~g~~~~~~~~~l~~~~~~~~  272 (304)
                      .+..++++.+++. ++.+...+..+++.+......+..+...+  .+-..++..++-++.... +..+++.+.++-+++-
T Consensus       187 Tn~tQd~lf~~~k~s~~~mM~~vNLf~~i~~~~~li~qg~~~~av~F~~~hp~~~~Di~l~s~-~gavGQ~FI~~TI~~F  265 (327)
T KOG1581|consen  187 TNATQDSLFKKYKVSSLHMMFGVNLFSAILNGTYLILQGHLLPAVSFIKEHPDVAFDILLYST-CGAVGQLFIFYTIERF  265 (327)
T ss_pred             HHhHHHHHhccCCccHhHHHHHHHHHHHHHHHHhhhcCCCCchHHHHHHcChhHHHHHHHHHH-hhhhhhheehhhHhhc
Confidence            8999999887654 68888888888888877666332221111  222234445555555555 5668899999999999


Q ss_pred             CceeeeeccchHHHHHHHHHHHHhCCcccc
Q 022016          273 GPLFSAMFNPLCTVIVTILAALLLHEEIYT  302 (304)
Q Consensus       273 ~a~~~s~~~~l~pv~a~l~~~~~~~e~~~~  302 (304)
                      |+-..+.++.+.=++++.++.+.+|.++++
T Consensus       266 Gslt~t~I~ttRk~~si~lS~i~f~h~~s~  295 (327)
T KOG1581|consen  266 GSLTFTTIMTTRKMVSIMLSCIVFGHPLSS  295 (327)
T ss_pred             ccHHHHHHHHHHHHHHHHHHHHHhCCccch
Confidence            999999999999999999999999999875

>PTZ00343 triose or hexose phosphate/phosphate translocator; Provisional

Probab=98.69  E-value=6.5e-07  Score=82.26  Aligned_cols=140  Identities=11%  Similarity=0.113  Sum_probs=102.4

Q ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHHhc------CCChHHHHHHHHHHHHHHHHHHHHhhhccccC----------CCCC
Q 022016            6 DYKPAMAMLALQFSYAVVALSTRAALLQ------GMNPRVFVVYRQAIATLFMAPMAYLSSRKYKS----------SSMG   69 (304)
Q Consensus         6 ~~~g~~~~l~~~~~~~~~~~~~k~~~~~------~~~p~~~~~~R~~~a~~~l~~~~~~~~~~~~~----------~~~~   69 (304)
                      +..|.++++++.+.|+...+..|...++      ..++.....+-...++++++|+....+..+..          ....
T Consensus       192 ~~~G~~~~l~s~~~~a~~~i~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lp~~~~~e~~~~~~~~~~~~~~~~~~~  271 (350)
T PTZ00343        192 TWLAFWCAMLSNLGSSLRSIFAKKTMKNKSEIGENLTASNIYMLLTLIASLISLPLVLFFEGKKWVPVWTNYTANMTNYT  271 (350)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccCCHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhhhcccccc
Confidence            3569999999999999999999998764      25677777777888988888877644321100          0001


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhhccccchhhhhcchhHHHHHHHHHHHhcccccccccccchhhhHHHHHHHhHhh
Q 022016           70 LRSFSLIFFIALLGVTINQNTYFEGLYLASSSMASAMGNLIPAITFVMASIVGLEKIDLGSVRSVAKILGTIFCVGGAIS  149 (304)
Q Consensus        70 ~~~~~~~~~~g~~~~~~~~~~~~~al~~~~~~~a~~i~~~~Pi~~~lla~l~~~er~~~~~~~~~~~~~g~~l~~~G~~l  149 (304)
                      ........+.+.+...+.+.+.|.+++++++.+.++..++.|++++++++++++|+++..      +++|.++++.|+++
T Consensus       272 ~~~~l~~i~~s~l~~~l~n~~~f~~l~~~s~~t~sv~~~lk~V~~iv~s~l~~ge~lt~~------~~iG~~lii~Gv~l  345 (350)
T PTZ00343        272 KGIIIFKIFFSGVWYYLYNEVAFYCLGKVNQVTHAVANTLKRVVIIVSSIIIFQTQVTLL------GYLGMAVAILGALL  345 (350)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHhhhhHHHhCCCCchH------hHHHHHHHHHHHHH
Confidence            111111222222222333334446999999999999999999999999999999999999      99999999999987


Q ss_pred             hh
Q 022016          150 MA  151 (304)
Q Consensus       150 i~  151 (304)
                      ..
T Consensus       346 Ys  347 (350)
T PTZ00343        346 YS  347 (350)
T ss_pred             Hh
Confidence            65

>COG0697 RhaT Permeases of the drug/metabolite transporter (DMT) superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / General function prediction only]

Probab=98.67  E-value=9.7e-07  Score=78.20  Aligned_cols=133  Identities=14%  Similarity=0.242  Sum_probs=108.0

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHH-HHHHHHHHHHHHHHHhhhccccCCCCCHHHHHHHHHHHHHHHH
Q 022016            7 YKPAMAMLALQFSYAVVALSTRAALLQGMNPRVFVV-YRQAIATLFMAPMAYLSSRKYKSSSMGLRSFSLIFFIALLGVT   85 (304)
Q Consensus         7 ~~g~~~~l~~~~~~~~~~~~~k~~~~~~~~p~~~~~-~R~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~   85 (304)
                      ..|..+.+.+++.|+...+..|... + .++..... +..........+...  ....  ...+.+.+......|+++.+
T Consensus       153 ~~g~~~~l~a~~~~a~~~~~~~~~~-~-~~~~~~~~~~~~~~~~~~~~~~~~--~~~~--~~~~~~~~~~~~~~g~~~~~  226 (292)
T COG0697         153 LLGLLLALAAALLWALYTALVKRLS-R-LGPVTLALLLQLLLALLLLLLFFL--SGFG--APILSRAWLLLLYLGVFSTG  226 (292)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhc-C-CChHHHHHHHHHHHHHHHHHHHHh--cccc--ccCCHHHHHHHHHHHHHHHH
Confidence            4799999999999999999999877 3 67777776 444422222222221  1111  22457888889999999977


Q ss_pred             HHHHHHHHHhhccccchhhhhcchhHHHHHHHHHHHhcccccccccccchhhhHHHHHHHhHhhhh
Q 022016           86 INQNTYFEGLYLASSSMASAMGNLIPAITFVMASIVGLEKIDLGSVRSVAKILGTIFCVGGAISMA  151 (304)
Q Consensus        86 ~~~~~~~~al~~~~~~~a~~i~~~~Pi~~~lla~l~~~er~~~~~~~~~~~~~g~~l~~~G~~li~  151 (304)
                      ..+.++++++++.+++.++.+..+.|++..++++++++|+++.+      ++.|..+.+.|+.+..
T Consensus       227 i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~l~~~e~~~~~------~~~G~~li~~g~~l~~  286 (292)
T COG0697         227 LAYLLWYYALRLLGASLVALLSLLEPVFAALLGVLLLGEPLSPA------QLLGAALVVLGVLLAS  286 (292)
T ss_pred             HHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHhCCCCcHH------HHHHHHHHHHHHHHHh
Confidence            89999999999999999999999999999999999999999999      9999999999999887

>TIGR00776 RhaT RhaT L-rhamnose-proton symporter family protein

Probab=98.66  E-value=4.5e-07  Score=81.17  Aligned_cols=129  Identities=14%  Similarity=0.066  Sum_probs=104.0

Q ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHH----HHHHHHHHHHHhhhccccCCCCCHHHHHHHHHHHH
Q 022016            6 DYKPAMAMLALQFSYAVVALSTRAALLQGMNPRVFVVYRQA----IATLFMAPMAYLSSRKYKSSSMGLRSFSLIFFIAL   81 (304)
Q Consensus         6 ~~~g~~~~l~~~~~~~~~~~~~k~~~~~~~~p~~~~~~R~~----~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~   81 (304)
                      ..+|++..+++++.++...+..|..  + .||....+....    .+.+++.+.    ++ .+ +. +.+.....+..|+
T Consensus       150 ~~~Gi~~~l~sg~~y~~~~~~~~~~--~-~~~~~~~~~~~~g~~~~~~~~~~~~----~~-~~-~~-~~~~~~~~~~~Gi  219 (290)
T TIGR00776       150 FKKGILLLLMSTIGYLVYVVVAKAF--G-VDGLSVLLPQAIGMVIGGIIFNLGH----IL-AK-PL-KKYAILLNILPGL  219 (290)
T ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHc--C-CCcceehhHHHHHHHHHHHHHHHHH----hc-cc-ch-HHHHHHHHHHHHH
Confidence            3689999999999999999999975  3 899988655555    333333332    11 12 22 3445555556888


Q ss_pred             HHHHHHHHHHHHHhh-ccccchhhhhcchhHHHHHHHHHHHhcccccccccccchhh----hHHHHHHHhHhhhh
Q 022016           82 LGVTINQNTYFEGLY-LASSSMASAMGNLIPAITFVMASIVGLEKIDLGSVRSVAKI----LGTIFCVGGAISMA  151 (304)
Q Consensus        82 ~~~~~~~~~~~~al~-~~~~~~a~~i~~~~Pi~~~lla~l~~~er~~~~~~~~~~~~----~g~~l~~~G~~li~  151 (304)
                      + ..+++.+|+.+.+ +.+++.++.+.+..|+...+.+++++||+.+++      ++    +|.++.+.|+.++.
T Consensus       220 ~-~~ia~~~y~~~~~~~~~~~~~~~ls~~~pvia~~~~v~~l~E~~~~~------~~~~~~iG~~lIi~~~~l~~  287 (290)
T TIGR00776       220 M-WGIGNFFYLFSAQPKVGVATSFSLSQLGVIISTLGGILILGEKKTKR------EMIAISVGIILIIIAANILG  287 (290)
T ss_pred             H-HHHHHHHHHHHcccccchhhHHHHHHHHHHHHHHHHHHHhccCCCcc------eeehhHHHHHHHHHHHHHHh
Confidence            8 5999999999999 999999999999999999999999999999999      99    99999999998876

These proteins are members of the L-Rhamnose Symporter (RhaT) Family (TC 2.A.7). This family includes two characterized members, both of which function as L-rhamnose:H+ symporters and have 10 GES predicted transmembrane domains.

>PRK15430 putative chloramphenical resistance permease RarD; Provisional

Probab=98.62  E-value=1e-06  Score=79.12  Aligned_cols=133  Identities=14%  Similarity=0.160  Sum_probs=92.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhcC-CChHHHHHHHHHHHHHHHHHHHHhhhccccCCCCCHHHHHHHHHHHHHHHHHHHH
Q 022016           11 MAMLALQFSYAVVALSTRAALLQG-MNPRVFVVYRQAIATLFMAPMAYLSSRKYKSSSMGLRSFSLIFFIALLGVTINQN   89 (304)
Q Consensus        11 ~~~l~~~~~~~~~~~~~k~~~~~~-~~p~~~~~~R~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~   89 (304)
                      ...+.++++|+...+..|...++. .++.....+-...+.....+..  ..........+...+......|.. ..+.+.
T Consensus       152 ~~~l~aa~~~a~~~i~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~g~~-t~i~~~  228 (296)
T PRK15430        152 IIALGLAFSFAFYGLVRKKIAVEAQTGMLIETMWLLPVAAIYLFAIA--DSSTSHMGQNPMSLNLLLIAAGIV-TTVPLL  228 (296)
T ss_pred             HHHHHHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHHHHHHHHHHc--cCCcccccCCcHHHHHHHHHHHHH-HHHHHH
Confidence            356778999999999999864321 2223333344434433322221  111000011122223344445554 478999


Q ss_pred             HHHHHhhccccchhhhhcchhHHHHHHHHHHHhcccccccccccchhhhHHHHHHHhHhhhhh
Q 022016           90 TYFEGLYLASSSMASAMGNLIPAITFVMASIVGLEKIDLGSVRSVAKILGTIFCVGGAISMAL  152 (304)
Q Consensus        90 ~~~~al~~~~~~~a~~i~~~~Pi~~~lla~l~~~er~~~~~~~~~~~~~g~~l~~~G~~li~~  152 (304)
                      ++++++++.+++.++.+.+..|++..++++++++|+++..      ++.|..+.+.|+.++..
T Consensus       229 ~~~~a~~~~~a~~~s~~~~l~Pv~a~~~g~l~l~E~~~~~------~~~G~~lI~~~~~v~~~  285 (296)
T PRK15430        229 CFTAAATRLRLSTLGFFQYIGPTLMFLLAVTFYGEKPGAD------KMVTFAFIWVALAIFVM  285 (296)
T ss_pred             HHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHcCCCCHH------HHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999999999      99999999999988873

>PRK13499 rhamnose-proton symporter; Provisional

Probab=98.59  E-value=7.4e-06  Score=74.26  Aligned_cols=280  Identities=13%  Similarity=0.019  Sum_probs=161.1

Q ss_pred             cchHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHH--Hhhhc---cccCCCCCHHHHHHHHHH
Q 022016            5 RDYKPAMAMLALQFSYAVVALSTRAALLQGMNPRVFVVYRQAIATLFMAPMA--YLSSR---KYKSSSMGLRSFSLIFFI   79 (304)
Q Consensus         5 ~~~~g~~~~l~~~~~~~~~~~~~k~~~~~~~~p~~~~~~R~~~a~~~l~~~~--~~~~~---~~~~~~~~~~~~~~~~~~   79 (304)
                      +...|++..+++.++||..++..|.. ++ -+ .+....-..+-.-++.|+.  .+..+   ... ...+.+.+...++.
T Consensus         4 ~~~~G~~~~~i~~~~~GS~~~p~K~~-k~-w~-wE~~W~v~gi~~wl~~~~~~g~~~~~~f~~~~-~~~~~~~~~~~~l~   79 (345)
T PRK13499          4 AIILGIIWHLIGGASSGSFYAPFKKV-KK-WS-WETMWSVGGIFSWLILPWLIAALLLPDFWAYY-SSFSGSTLLPVFLF   79 (345)
T ss_pred             hhHHHHHHHHHHHHHhhccccccccc-CC-Cc-hhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHH-HhcCHHHHHHHHHH
Confidence            46789999999999999999999993 22 22 2222110111111111110  01001   111 23467778888888


Q ss_pred             HHHHHHHHHHHHHHHhhccccchhhhhcc-hhHHHHHHHHHHHhcccc---cccccccchhhhHHHHHHHhHhhhhhccC
Q 022016           80 ALLGVTINQNTYFEGLYLASSSMASAMGN-LIPAITFVMASIVGLEKI---DLGSVRSVAKILGTIFCVGGAISMALLRG  155 (304)
Q Consensus        80 g~~~~~~~~~~~~~al~~~~~~~a~~i~~-~~Pi~~~lla~l~~~er~---~~~~~~~~~~~~g~~l~~~G~~li~~~~~  155 (304)
                      |++- .+++..++.++++.+++.+..+.. ++-+...++..++++|=.   +..  ....-..|+++.++|+++......
T Consensus        80 G~~W-~iG~i~~~~s~~~iGvS~~~pIs~Gl~lv~gtL~~~i~~gew~~~~~t~--~g~~~~~gv~liliGi~l~s~Ag~  156 (345)
T PRK13499         80 GALW-GIGGITYGLTMRYLGMSLGIGIAIGITLIVGTLMPPIINGNFDVLLATN--GGRMTLLGVLVALIGVAIVGRAGQ  156 (345)
T ss_pred             HHHH-HhhhhhHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHccccccccccc--hHHHHHHHHHHHHHHHHHHHHhhh
Confidence            8886 999999999999999999988885 777889999999988643   222  122367788888889888884221


Q ss_pred             CccccccCCccccccccCCCCCchHHHHHHHHHHHHHHHHHH-------HhHHHHhhcCCCchhHHHHHH---HHHHHHH
Q 022016          156 PKLLNTEFLPEKSFLFRSSGGENWLLGCLFLFASACCWSLWL-------ILQVPVSASYPDHLSLSAWMC---FLATLQS  225 (304)
Q Consensus       156 ~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~l~a~~~~a~~~-------~~~k~~~~~~~~~~~~~~~~~---~~~~l~~  225 (304)
                      ..        ++++..+.+.+.+..+|.+.++++++.++.|.       ...+...+...++.....-+.   +.|....
T Consensus       157 ~k--------~~~~~~~~~~~~~~~KGi~ialisgi~~~~f~~~~~~~~~~~~~a~~~g~~~~~~~lp~~~~~~~G~~~~  228 (345)
T PRK13499        157 LK--------ERKMGIKKAEEFNLKKGLILAVMSGIFSACFSFAMDAGKPMHEAAAALGVDPLYAALPSYVVIMGGGAIT  228 (345)
T ss_pred             hc--------ccccccccccccchHhHHHHHHHHHHHHHHHHHHHhhccchhhhhhhcCCCchHHHHHHHHHHHHHHHHH
Confidence            11        11111001234567899999999999999999       444432111113333333332   2444433


Q ss_pred             HHH-HHh---cCCCcc--cccccC----cchHHHHHHHHhhccchheeeeeeeecccCceeeee----ccchHHHHHHHH
Q 022016          226 ATF-AIF---TEPDPE--AWNLHS----SLEIFCCFFSGAIGSGVSFCVQAWCISKRGPLFSAM----FNPLCTVIVTIL  291 (304)
Q Consensus       226 ~~~-~~~---~~~~~~--~~~~~~----~~~~~~~~~~g~~~~~~~~~l~~~~~~~~~a~~~s~----~~~l~pv~a~l~  291 (304)
                      -.. ...   ...+..  .....+    ..........|+ .=.+++..|..+.++.+......    .+.+..+++.+.
T Consensus       229 n~~~~~~~~~k~~~~~~~~~~~~~~~~~~~n~l~~~l~G~-~W~~~~~~y~~~~~~~g~~~~~~sw~l~m~~~Viistlw  307 (345)
T PRK13499        229 NLGFCFIRLAKNKDLSLKADFSLAKPLLITNVLLSALAGV-MWYLQFFFYAMGHSKLGAQYDFVSWMLHMSFYVLCGNLW  307 (345)
T ss_pred             HHHHHHHHHhhCCCcccchhccccchhHHHHHHHHHHHHH-HHHHHHHHHHHHHHHcCCccchHHHHHhccHHHHHHHHh
Confidence            321 111   111111  011111    112121122232 34566677777777776554433    336777899999


Q ss_pred             HHHHhCCccc
Q 022016          292 AALLLHEEIY  301 (304)
Q Consensus       292 ~~~~~~e~~~  301 (304)
                      +. ++||.=+
T Consensus       308 Gi-~lkE~K~  316 (345)
T PRK13499        308 GL-VLKEWKG  316 (345)
T ss_pred             hh-hhhhccC
Confidence            98 4899643

>PRK15051 4-amino-4-deoxy-L-arabinose-phosphoundecaprenol flippase subunit ArnE; Provisional

Probab=98.54  E-value=6.9e-07  Score=68.07  Aligned_cols=70  Identities=17%  Similarity=0.122  Sum_probs=64.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHhhccccchhhhhcchhHHHHHHHHHHHhcccccccccccchhhhHHHHHHHhHhhhh
Q 022016           76 IFFIALLGVTINQNTYFEGLYLASSSMASAMGNLIPAITFVMASIVGLEKIDLGSVRSVAKILGTIFCVGGAISMA  151 (304)
Q Consensus        76 ~~~~g~~~~~~~~~~~~~al~~~~~~~a~~i~~~~Pi~~~lla~l~~~er~~~~~~~~~~~~~g~~l~~~G~~li~  151 (304)
                      ....++.+++....++..++++.|.+.+..+.++.|+++.+++++++|||++++      |++|+.+.+.|++++.
T Consensus        39 ~~~~~~~~~~l~~~~~~~al~~iplg~Ay~~~~l~~v~~~~~~~l~f~E~ls~~------~~~Gi~lii~Gv~~i~  108 (111)
T PRK15051         39 WLGLALACLGLAMVLWLLVLQNVPVGIAYPMLSLNFVWVTLAAVKLWHEPVSPR------HWCGVAFIIGGIVILG  108 (111)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhhCChHHHHHHHHHHHHHHHHHHHHHhCCCCCHH------HHHHHHHHHHHHHHHh
Confidence            334555777889999999999999999999999999999999999999999999      9999999999998876

>PF06027 DUF914: Eukaryotic protein of unknown function (DUF914); InterPro: IPR009262 This family consists of several hypothetical proteins of unknown function

Probab=98.53  E-value=3e-06  Score=76.68  Aligned_cols=142  Identities=12%  Similarity=-0.034  Sum_probs=114.1

Q ss_pred             ccchHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHhhhccccCCC--CCHHHHHHHHHHHH
Q 022016            4 LRDYKPAMAMLALQFSYAVVALSTRAALLQGMNPRVFVVYRQAIATLFMAPMAYLSSRKYKSSS--MGLRSFSLIFFIAL   81 (304)
Q Consensus         4 ~~~~~g~~~~l~~~~~~~~~~~~~k~~~~~~~~p~~~~~~R~~~a~~~l~~~~~~~~~~~~~~~--~~~~~~~~~~~~g~   81 (304)
                      .++.+|-++++.+++++|.+.+..|...++ .|+.++..+--+.+.++..+.....+++.. .+  .+.+....++..++
T Consensus       164 ~~~i~GDll~l~~a~lya~~nV~~E~~v~~-~~~~~~lg~~Glfg~ii~~iq~~ile~~~i-~~~~w~~~~~~~~v~~~~  241 (334)
T PF06027_consen  164 SNPILGDLLALLGAILYAVSNVLEEKLVKK-APRVEFLGMLGLFGFIISGIQLAILERSGI-ESIHWTSQVIGLLVGYAL  241 (334)
T ss_pred             CccchhHHHHHHHHHHHHHHHHHHHHhccc-CCHHHHHHHHHHHHHHHHHHHHHheehhhh-hccCCChhhHHHHHHHHH
Confidence            467899999999999999999999999876 899999888888888888776666565554 32  34444443333333


Q ss_pred             HHHHHHHHHHHHHhhccccchhhhhcchhHHHHHHHHHHHhcccccccccccchhhhHHHHHHHhHhhhhhcc
Q 022016           82 LGVTINQNTYFEGLYLASSSMASAMGNLIPAITFVMASIVGLEKIDLGSVRSVAKILGTIFCVGGAISMALLR  154 (304)
Q Consensus        82 ~~~~~~~~~~~~al~~~~~~~a~~i~~~~Pi~~~lla~l~~~er~~~~~~~~~~~~~g~~l~~~G~~li~~~~  154 (304)
                       ..+..+.+.-..+++++++...+=..+..++..+...+++|+++++.      .++|.++.++|.++....+
T Consensus       242 -~lf~~y~l~p~~l~~ssAt~~nLsLLTsd~~ali~~i~~f~~~~~~l------y~~af~lIiiG~vvy~~~~  307 (334)
T PF06027_consen  242 -CLFLFYSLVPIVLRMSSATFFNLSLLTSDFYALIIDIFFFGYKFSWL------YILAFALIIIGFVVYNLAE  307 (334)
T ss_pred             -HHHHHHHHHHHHHHhCccceeehHHHHhhHHHHHHHHHhcCccccHH------HHHHHHHHHHHhheEEccC
Confidence             34666677778899999988888778999999999999999999998      9999999999999998643

Some of the sequences in this family are annotated as putative membrane proteins.

>TIGR00688 rarD rarD protein

Probab=98.46  E-value=2.1e-07  Score=81.74  Aligned_cols=119  Identities=9%  Similarity=0.107  Sum_probs=91.8

Q ss_pred             HHHHHHHHHHHHHHHHHHhHHHHhhcCCCchhHHHHHHHHHHHHHHHHHHhcCCCc---ccccccCcch-HHHHHHHHhh
Q 022016          181 LGCLFLFASACCWSLWLILQVPVSASYPDHLSLSAWMCFLATLQSATFAIFTEPDP---EAWNLHSSLE-IFCCFFSGAI  256 (304)
Q Consensus       181 ~G~~~~l~a~~~~a~~~~~~k~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~---~~~~~~~~~~-~~~~~~~g~~  256 (304)
                      +|..+.+.++++|+...+..|. ..+. +|.++..++++++.+.+.+......+..   ..++..+..+ +......|++
T Consensus         2 ~g~~~~i~a~~~wg~~~~~~k~-~~~~-~~~~i~~~R~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~   79 (256)
T TIGR00688         2 KGIIVSLLASFLFGYMYYYSKL-LKPL-PATDILGHRMIWSFPFMLLSVTLFRQWAALIERLKRIQKRPLILSLLLCGLL   79 (256)
T ss_pred             CcHHHHHHHHHHHHHHHHHHHH-hccC-CHHHHHHHHHHHHHHHHHHHHHHHcchHHHHHHHhCcccchHHHHHHHHHHH
Confidence            5889999999999999999998 4567 5999999999999888766554332110   1111111222 3344455553


Q ss_pred             ccchheeeeeeeecccCceeeeeccchHHHHHHHHHHHHhCCcccc
Q 022016          257 GSGVSFCVQAWCISKRGPLFSAMFNPLCTVIVTILAALLLHEEIYT  302 (304)
Q Consensus       257 ~~~~~~~l~~~~~~~~~a~~~s~~~~l~pv~a~l~~~~~~~e~~~~  302 (304)
                       ..+.+.++++++++++++.++.+.++.|+++.++++++++|+++.
T Consensus        80 -~~~~~~~~~~a~~~~~~~~a~~l~~~~Pi~~~lla~~~l~Ek~~~  124 (256)
T TIGR00688        80 -IGFNWWLFIWAVNNGSSLEVSLGYLINPLVMVALGRVFLKERISR  124 (256)
T ss_pred             -HHHHHHHHHHHHHcchHHHHHHHHHHHHHHHHHHHHHHHhcCCCH
Confidence             667889999999999999999999999999999999999999985

This uncharacterized protein is predicted to have many membrane-spanning domains.

>PRK02971 4-amino-4-deoxy-L-arabinose-phosphoundecaprenol flippase subunit ArnF; Provisional

Probab=98.43  E-value=7e-06  Score=64.15  Aligned_cols=118  Identities=19%  Similarity=0.112  Sum_probs=91.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHhhhccccCCCCCHHHHHHHHHHHHHHHHHH
Q 022016            8 KPAMAMLALQFSYAVVALSTRAALLQGMNPRVFVVYRQAIATLFMAPMAYLSSRKYKSSSMGLRSFSLIFFIALLGVTIN   87 (304)
Q Consensus         8 ~g~~~~l~~~~~~~~~~~~~k~~~~~~~~p~~~~~~R~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~   87 (304)
                      ++++++++..++-+...++.|...++ .++.+.....  .    ..... .  .  . |       ...+..|+...+++
T Consensus         2 ~~~~~i~~sv~l~~~gQl~~K~g~~~-~g~~~~~~~~--~----~~~~~-~--~--~-p-------~~~i~lgl~~~~la   61 (129)
T PRK02971          2 MGYLWGLASVLLASVAQLSLKWGMSR-LPLLSHAWDF--I----AALLA-F--G--L-A-------LRAVLLGLAGYALS   61 (129)
T ss_pred             ccHHHHHHHHHHHHHHHHHHHHHHhh-CCCccchhHH--H----HHHHH-H--h--c-c-------HHHHHHHHHHHHHH
Confidence            46778888888889999999999865 5544322211  0    00000 0  0  0 1       22567888888999


Q ss_pred             HHHHHHHhhccccchhhhhcchhHHHHHHHHHH--HhcccccccccccchhhhHHHHHHHhHhhhh
Q 022016           88 QNTYFEGLYLASSSMASAMGNLIPAITFVMASI--VGLEKIDLGSVRSVAKILGTIFCVGGAISMA  151 (304)
Q Consensus        88 ~~~~~~al~~~~~~~a~~i~~~~Pi~~~lla~l--~~~er~~~~~~~~~~~~~g~~l~~~G~~li~  151 (304)
                      +.++.+++++.|++.+..+.+..+.++.+.++.  ++||+++++      |++|+.+.+.|++++.
T Consensus        62 ~~~w~~aL~~~~ls~Ayp~~sl~~~~v~~~~~~~~~~~E~ls~~------~~iGi~lIi~GV~lv~  121 (129)
T PRK02971         62 MLCWLKALRYLPLSRAYPLLSLSYALVYLAAMLLPWFNETFSLK------KTLGVACIMLGVWLIN  121 (129)
T ss_pred             HHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHHHcCCCCCHH------HHHHHHHHHHHHHHhc
Confidence            999999999999999999999999888888885  799999999      9999999999999987

>KOG4314 consensus Predicted carbohydrate/phosphate translocator [General function prediction only]

Probab=98.43  E-value=6.3e-07  Score=73.34  Aligned_cols=182  Identities=17%  Similarity=0.118  Sum_probs=122.8

Q ss_pred             HHHHHHHHHHhhccccchhhhhcchhHHHHHHHHHHHhcccccccccccchhhhHHHHHHHhHhhhhhccCCccccccCC
Q 022016           85 TINQNTYFEGLYLASSSMASAMGNLIPAITFVMASIVGLEKIDLGSVRSVAKILGTIFCVGGAISMALLRGPKLLNTEFL  164 (304)
Q Consensus        85 ~~~~~~~~~al~~~~~~~a~~i~~~~Pi~~~lla~l~~~er~~~~~~~~~~~~~g~~l~~~G~~li~~~~~~~~~~~~~~  164 (304)
                      ...+..|..+++..++++++.+.....-|+.++++++++||+.-.      ++++.++++.|++++...           
T Consensus        64 t~aNY~Yl~AL~~is~s~asai~~CNaAFVfiLa~IVL~D~~~~~------kIlaailAI~GiVmiay~-----------  126 (290)
T KOG4314|consen   64 TGANYLYLLALKKISASDASAIFACNAAFVFILAIIVLGDRFMGF------KILAAILAIGGIVMIAYA-----------  126 (290)
T ss_pred             ecCCcHHHHHHHhcChhhhHHHHHhhHHHHHHHHHHHhccchhhh------hHHHHHHHhCcEEEEEec-----------
Confidence            567889999999999999999999999999999999999999998      999999999999999841           


Q ss_pred             ccccccccCCCCCchHHHHHHHHHHHHHHHHHHHhHHHHhhcCCCchhHHHHHHHHHHHHHHHHHH----hcCCCccccc
Q 022016          165 PEKSFLFRSSGGENWLLGCLFLFASACCWSLWLILQVPVSASYPDHLSLSAWMCFLATLQSATFAI----FTEPDPEAWN  240 (304)
Q Consensus       165 ~~~~~~~~~~~~~~~~~G~~~~l~a~~~~a~~~~~~k~~~~~~~~~~~~~~~~~~~~~l~~~~~~~----~~~~~~~~~~  240 (304)
                              +....+...|..++..++++-|+|-+.-|+...+. +--....+....|..-+.....    ......+.++
T Consensus       127 --------DN~~a~e~iGi~~AV~SA~~aAlYKV~FK~~iGnA-n~Gdaa~FmS~LGF~NL~~~~~~~lIL~~T~VE~~q  197 (290)
T KOG4314|consen  127 --------DNEHADEIIGIACAVGSAFMAALYKVLFKMFIGNA-NFGDAAHFMSCLGFFNLCFISFPALILAFTGVEHLQ  197 (290)
T ss_pred             --------cchhhhhhhhHHHHHHHHHHHHHHHHHHHHHhccC-cchhHHHHHHHHHHHHHHHHhhhHHHHHHhchHHHH
Confidence                    13455678999999999999999999999998765 3334444444444433332221    0111122222


Q ss_pred             ccCcchHHHHHHHHhhccchheeeeeeeecccCceeeeeccchHHHHHHHHHH
Q 022016          241 LHSSLEIFCCFFSGAIGSGVSFCVQAWCISKRGPLFSAMFNPLCTVIVTILAA  293 (304)
Q Consensus       241 ~~~~~~~~~~~~~g~~~~~~~~~l~~~~~~~~~a~~~s~~~~l~pv~a~l~~~  293 (304)
                      .-....|..+...+...... ..+.+.++....+-..|.=+....+--..++.
T Consensus       198 sFA~~PWG~l~G~A~L~lAF-N~~iN~GiaL~~PilISiG~l~~iP~NaaiDi  249 (290)
T KOG4314|consen  198 SFAAAPWGCLCGAAGLSLAF-NFLINFGIALLNPILISIGMLCGIPGNAAIDI  249 (290)
T ss_pred             HHhhCCchhhhhHHHHHHHH-hhheeehhhhhchhhheehheecCcchhHHHH
Confidence            11122466555444433222 23345666666666555544444444444443

>COG5006 rhtA Threonine/homoserine efflux transporter [Amino acid transport and metabolism]

Probab=98.39  E-value=5.7e-06  Score=70.43  Aligned_cols=136  Identities=14%  Similarity=0.061  Sum_probs=115.9

Q ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHhhhccccCCCCCHHHHHHHHHHHHHHHH
Q 022016            6 DYKPAMAMLALQFSYAVVALSTRAALLQGMNPRVFVVYRQAIATLFMAPMAYLSSRKYKSSSMGLRSFSLIFFIALLGVT   85 (304)
Q Consensus         6 ~~~g~~~~l~~~~~~~~~~~~~k~~~~~~~~p~~~~~~R~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~   85 (304)
                      +..|..+++.+..+|+..-+..|..-+. .+.-.-+..-+.+++++.+|+-.-.  ... .-.++.-....+..+++...
T Consensus       146 Dp~Gv~~Al~AG~~Wa~YIv~G~r~g~~-~~g~~g~a~gm~vAaviv~Pig~~~--ag~-~l~~p~ll~laLgvavlSSa  221 (292)
T COG5006         146 DPVGVALALGAGACWALYIVLGQRAGRA-EHGTAGVAVGMLVAALIVLPIGAAQ--AGP-ALFSPSLLPLALGVAVLSSA  221 (292)
T ss_pred             CHHHHHHHHHHhHHHHHHHHHcchhccc-CCCchHHHHHHHHHHHHHhhhhhhh--cch-hhcChHHHHHHHHHHHHhcc
Confidence            5578999999999999999999998754 6667777788899999999987532  222 22456677778889999999


Q ss_pred             HHHHHHHHHhhccccchhhhhcchhHHHHHHHHHHHhcccccccccccchhhhHHHHHHHhHhhhh
Q 022016           86 INQNTYFEGLYLASSSMASAMGNLIPAITFVMASIVGLEKIDLGSVRSVAKILGTIFCVGGAISMA  151 (304)
Q Consensus        86 ~~~~~~~~al~~~~~~~a~~i~~~~Pi~~~lla~l~~~er~~~~~~~~~~~~~g~~l~~~G~~li~  151 (304)
                      +.+.+-..++++.|...-+++.++.|.+..+.++++++|+++..      ||.++...+.+..=..
T Consensus       222 lPYsLEmiAL~rlp~~~F~~LlSLePa~aAl~G~i~L~e~ls~~------qwlaI~~ViaAsaG~~  281 (292)
T COG5006         222 LPYSLEMIALRRLPARTFGTLLSLEPALAALSGLIFLGETLTLI------QWLAIAAVIAASAGST  281 (292)
T ss_pred             cchHHHHHHHhhCChhHHHHHHHhhHHHHHHHHHHHhcCCCCHH------HHHHHHHHHHHHhccc
Confidence            99999999999999999999999999999999999999999999      9999999888776444

>PF05653 Mg_trans_NIPA: Magnesium transporter NIPA; InterPro: IPR008521 This family consists of several eukaryotic proteins of unknown function

Probab=98.36  E-value=3.5e-06  Score=75.54  Aligned_cols=119  Identities=18%  Similarity=0.238  Sum_probs=92.3

Q ss_pred             cchHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHhhhccccCCCCCHHHH-HHHHHHHHHH
Q 022016            5 RDYKPAMAMLALQFSYAVVALSTRAALLQGMNPRVFVVYRQAIATLFMAPMAYLSSRKYKSSSMGLRSF-SLIFFIALLG   83 (304)
Q Consensus         5 ~~~~g~~~~l~~~~~~~~~~~~~k~~~~~~~~p~~~~~~R~~~a~~~l~~~~~~~~~~~~~~~~~~~~~-~~~~~~g~~~   83 (304)
                      +...|...++.++++-+....+.|....+ .+.                       +..+..+-.++.+ ...+..|+..
T Consensus         4 ~~~iGv~lav~ss~~~~~g~~lqk~~~~r-~~~-----------------------~~~~~~~~~~~~l~~~~W~~G~~~   59 (300)
T PF05653_consen    4 DFYIGVLLAVVSSIFIAVGFNLQKKSHLR-LPR-----------------------GSLRAGSGGRSYLRRPLWWIGLLL   59 (300)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHH-hhc-----------------------ccccccchhhHHHhhHHHHHHHHH
Confidence            46678999999999999999999987643 100                       0000000011111 2345677777


Q ss_pred             HHHHHHHHHHHhhccccchhhhhcchhHHHHHHHHHHHhcccccccccccchhhhHHHHHHHhHhhhhhc
Q 022016           84 VTINQNTYFEGLYLASSSMASAMGNLIPAITFVMASIVGLEKIDLGSVRSVAKILGTIFCVGGAISMALL  153 (304)
Q Consensus        84 ~~~~~~~~~~al~~~~~~~a~~i~~~~Pi~~~lla~l~~~er~~~~~~~~~~~~~g~~l~~~G~~li~~~  153 (304)
                      +.++..+.+.|+.+.|++..+.+....-++..+++..++|||++++      ++.|+.+++.|..+++..
T Consensus        60 ~~~g~~~~~~Al~~ap~slv~Plg~~~lv~~~~~a~~~l~e~~~~~------~~~G~~l~i~G~~liv~~  123 (300)
T PF05653_consen   60 MVLGEILNFVALGFAPASLVAPLGALSLVFNAVLARFFLGEKLTRR------DIVGCALIILGSVLIVIF  123 (300)
T ss_pred             HhcchHHHHHHHHhhhHHHHHHHHhhhhhhHHHHhHHHhcccchHh------HHhhHHHHHhhheeeEEe
Confidence            7889999999999999999999999999999999999999999999      999999999999988753

>KOG1442 consensus GDP-fucose transporter [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]

Probab=98.23  E-value=2.8e-05  Score=66.97  Aligned_cols=240  Identities=15%  Similarity=0.105  Sum_probs=160.8

Q ss_pred             ChHHHHHHHHHHHHHHHHHHHHhhhcccc---CCC--CCHHHHHHHHHHHHHHHHHHHHHHHHHhhccccchhhhhcchh
Q 022016           36 NPRVFVVYRQAIATLFMAPMAYLSSRKYK---SSS--MGLRSFSLIFFIALLGVTINQNTYFEGLYLASSSMASAMGNLI  110 (304)
Q Consensus        36 ~p~~~~~~R~~~a~~~l~~~~~~~~~~~~---~~~--~~~~~~~~~~~~g~~~~~~~~~~~~~al~~~~~~~a~~i~~~~  110 (304)
                      .|..+..+++++...+...+-....+-+.   .++  ++.+..+...-+.+.- ...-.+-++.++|.+++--.+==++.
T Consensus        60 ~plf~t~~qcLvt~~~c~~ls~ls~k~~~~ftfp~~~ldl~t~r~vlplsvVf-i~mI~fnnlcL~yVgVaFYyvgRsLt  138 (347)
T KOG1442|consen   60 APLFITWYQCLVTTSICLVLSSLSVKYPGLFTFPSLQLDLATARQVLPLSVVF-ILMISFNNLCLKYVGVAFYYVGRSLT  138 (347)
T ss_pred             cHHHHHHHHHHHHHHHHHHHHHHHhhccceeccCcccccHHHHHhhcchhhee-eeehhccceehhhcceEEEEeccchh
Confidence            47778888888877777665544333211   122  2323223222223322 33444566778888888777777888


Q ss_pred             HHHHHHHHHHHhcccccccccccchhhhHHHHHHHhHhhhhhccCCccccccCCccccccccCCCCCchHHHHHHHHHHH
Q 022016          111 PAITFVMASIVGLEKIDLGSVRSVAKILGTIFCVGGAISMALLRGPKLLNTEFLPEKSFLFRSSGGENWLLGCLFLFASA  190 (304)
Q Consensus       111 Pi~~~lla~l~~~er~~~~~~~~~~~~~g~~l~~~G~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~l~a~  190 (304)
                      .+|+.++++.++|+|-+..      ...+..+.+.|--+=+   +.|               +..+.-...|.+++..++
T Consensus       139 tvFtVlLtyvllkqkTs~~------~~~~C~lIi~GF~lGv---dqE---------------~~~~~ls~~GvifGVlaS  194 (347)
T KOG1442|consen  139 TVFTVLLTYVLLKQKTSFF------ALGCCLLIILGFGLGV---DQE---------------GSTGTLSWIGVIFGVLAS  194 (347)
T ss_pred             hhHHHHhHHhhcccccccc------cceeehhheehheecc---ccc---------------cccCccchhhhHHHHHHH
Confidence            9999999999999999997      6666666666654444   221               123445669999999999


Q ss_pred             HHHHHHHHhHHHHhhcCCC-chhHHHHHHHHHHHHHHHHHHhcCCCcc---ccccc-CcchHHHHHHHHhhccchheeee
Q 022016          191 CCWSLWLILQVPVSASYPD-HLSLSAWMCFLATLQSATFAIFTEPDPE---AWNLH-SSLEIFCCFFSGAIGSGVSFCVQ  265 (304)
Q Consensus       191 ~~~a~~~~~~k~~~~~~~~-~~~~~~~~~~~~~l~~~~~~~~~~~~~~---~~~~~-~~~~~~~~~~~g~~~~~~~~~l~  265 (304)
                      ++-|+..+..||......| -...+.|....+.+++.|...+-+ +.+   .++.. +...|..+...|+++-.++|.- 
T Consensus       195 l~vAlnaiytkk~l~~v~~~iw~lt~ynnv~a~lLflpll~lng-e~~~v~~~~~l~a~~Fw~~mtLsglfgF~mgyvT-  272 (347)
T KOG1442|consen  195 LAVALNAIYTKKVLPPVGDCIWRLTAYNNVNALLLFLPLLILNG-EFQAVVGFPHLPAIKFWILMTLSGLFGFAMGYVT-  272 (347)
T ss_pred             HHHHHHHHhhheecccccCeehhhHHHHHHHHHHHHHHHHHHcc-hHHHHcCcccchHHHHHHHHHHHHHHHHHhhhee-
Confidence            9999999999987665443 345566778888888888777443 322   22222 3346777778888777666543 


Q ss_pred             eeeecccCceeeeeccchHHHHHHHHHHHHhCCcccc
Q 022016          266 AWCISKRGPLFSAMFNPLCTVIVTILAALLLHEEIYT  302 (304)
Q Consensus       266 ~~~~~~~~a~~~s~~~~l~pv~a~l~~~~~~~e~~~~  302 (304)
                      .+=+|..+|-.-+.-..-.-..-.+++..+++|.-+.
T Consensus       273 g~QIK~TSplThnISgTAka~aQTvlAv~~y~E~ks~  309 (347)
T KOG1442|consen  273 GWQIKVTSPLTHNISGTAKAAAQTVLAVAYYSETKSG  309 (347)
T ss_pred             eEEEEecccceeeecHhHHHHHHHHHHHHHHHHHhhh
Confidence            4667778887777777777777788888888887654

>COG5070 VRG4 Nucleotide-sugar transporter [Carbohydrate transport and metabolism / Posttranslational modification, protein turnover, chaperones / Intracellular trafficking and secretion]

Probab=98.22  E-value=1.8e-05  Score=66.14  Aligned_cols=252  Identities=13%  Similarity=0.140  Sum_probs=166.6

Q ss_pred             HHHHHHHhc-CCChHH-HHHHHHHHHHHHHHHHHHhhhccccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhhccccch
Q 022016           25 LSTRAALLQ-GMNPRV-FVVYRQAIATLFMAPMAYLSSRKYKSSSMGLRSFSLIFFIALLGVTINQNTYFEGLYLASSSM  102 (304)
Q Consensus        25 ~~~k~~~~~-~~~p~~-~~~~R~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~al~~~~~~~  102 (304)
                      +..|+.+.. |++... +.+.+..++.+.+..+-.. +--+. +..+.|.|   +..+++- ...-..--.+++|.++..
T Consensus        23 ltNKyVls~~gfnMnflll~vQSlvcvv~l~iLk~l-~~~~f-R~t~aK~W---fpiSfLL-v~MIyt~SKsLqyL~vpi   96 (309)
T COG5070          23 LTNKYVLSNLGFNMNFLLLAVQSLVCVVGLLILKFL-RLVEF-RLTKAKKW---FPISFLL-VVMIYTSSKSLQYLAVPI   96 (309)
T ss_pred             HhhHheecCCCCchhhHHHHHHHHHHHHHHHHHHHH-hHhhe-ehhhhhhh---cCHHHHH-HHHHHhcccceeeeeeeH
Confidence            445665542 344433 3445555555544443221 11111 11122333   2334443 444556678999999999


Q ss_pred             hhhhcchhHHHHHHHHHHHhcccccccccccchhhhHHHHHHHhHhhhhhccCCccccccCCccccccccCCCCCchHHH
Q 022016          103 ASAMGNLIPAITFVMASIVGLEKIDLGSVRSVAKILGTIFCVGGAISMALLRGPKLLNTEFLPEKSFLFRSSGGENWLLG  182 (304)
Q Consensus       103 a~~i~~~~Pi~~~lla~l~~~er~~~~~~~~~~~~~g~~l~~~G~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G  182 (304)
                      -+++-++.-+.++....++++.|++..      +..+-++-++..+.-.   ..+....           .-..+..+-|
T Consensus        97 YTiFKNltII~iAygEvl~Fgg~vtsl------~l~SFilMvlSS~va~---w~D~q~~-----------~~~~~~lN~G  156 (309)
T COG5070          97 YTIFKNLTIILIAYGEVLFFGGRVTSL------ELLSFILMVLSSVVAT---WGDQQAS-----------AFKAQILNPG  156 (309)
T ss_pred             HHHhccceeehhHhhHHHHhcCccchh------hHHHHHHHHHHHHHhc---cchhhHH-----------HHHhcccCCc
Confidence            999999999999999999999999998      8888887777766655   2111000           0012345578


Q ss_pred             HHHHHHHHHHHHHHHHhHHHHhhcCC-CchhHHHHHHHHHHHHHHHHHHhcCCCccc-ccc-cCcchHHHHHHHHhhccc
Q 022016          183 CLFLFASACCWSLWLILQVPVSASYP-DHLSLSAWMCFLATLQSATFAIFTEPDPEA-WNL-HSSLEIFCCFFSGAIGSG  259 (304)
Q Consensus       183 ~~~~l~a~~~~a~~~~~~k~~~~~~~-~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~-~~~-~~~~~~~~~~~~g~~~~~  259 (304)
                      .+|+...+++-+.|....|+..+-.. .......|..+.+...+..+.++.+...++ ..- .+.....++...|++.-+
T Consensus       157 Y~Wm~~NclssaafVL~mrkri~ltNf~d~dtmfYnNllslPiL~~~s~~~edws~~n~annl~~d~l~am~ISgl~svg  236 (309)
T COG5070         157 YLWMFTNCLSSAAFVLIMRKRIKLTNFKDFDTMFYNNLLSLPILLSFSFLFEDWSPGNLANNLSVDSLMAMFISGLCSVG  236 (309)
T ss_pred             eEEEehhhHhHHHHHHHHHHhhcccccchhhHHHHhhhHHHHHHHHHHHHhccCCcchhhcCCChHHHHHHHHHHHHHhh
Confidence            88888999999999888888754421 366778899999999998888877632111 111 112244556667775555


Q ss_pred             hheeeeeeeecccCceeeeeccchHHHHHHHHHHHHhCCccccC
Q 022016          260 VSFCVQAWCISKRGPLFSAMFNPLCTVIVTILAALLLHEEIYTG  303 (304)
Q Consensus       260 ~~~~l~~~~~~~~~a~~~s~~~~l~pv~a~l~~~~~~~e~~~~~  303 (304)
                      +. .+-.|+++..+.+.-+++..+.-.-..+-|.++++|+.+.+
T Consensus       237 iS-y~saWcvrVtSSTtySMvGALNKlp~alaGlvffdap~nf~  279 (309)
T COG5070         237 IS-YCSAWCVRVTSSTTYSMVGALNKLPIALAGLVFFDAPVNFL  279 (309)
T ss_pred             hh-hccceeEeehhhhHHHHHHHhhhChHHHhhhhhcCCchhHH
Confidence            54 46679999999999999999999999999999999998754

>KOG3912 consensus Predicted integral membrane protein [General function prediction only]

Probab=98.20  E-value=0.0001  Score=63.82  Aligned_cols=195  Identities=14%  Similarity=0.118  Sum_probs=135.2

Q ss_pred             HHHHHHHHHHHHHHHh---cCC----ChHHHHHHHHHHHHHHHHHHHHhhhccccC---C-------CC--CHHHHHHHH
Q 022016           17 QFSYAVVALSTRAALL---QGM----NPRVFVVYRQAIATLFMAPMAYLSSRKYKS---S-------SM--GLRSFSLIF   77 (304)
Q Consensus        17 ~~~~~~~~~~~k~~~~---~~~----~p~~~~~~R~~~a~~~l~~~~~~~~~~~~~---~-------~~--~~~~~~~~~   77 (304)
                      .+.=+.+-+++|++-+   +|-    .|.....--++.=.++++.+..++.+...+   .       +.  +.+. ...+
T Consensus        12 vvsGs~Ntl~aKwadsi~~eg~pgfqhpvlqal~mFlGEflCl~vf~lir~~sn~~g~~s~~~~ilsq~~~pf~p-~lfl   90 (372)
T KOG3912|consen   12 VVSGSFNTLVAKWADSIQAEGSPGFQHPVLQALLMFLGEFLCLAVFKLIRLRSNGQGVSSDLDSILSQDSSPFNP-VLFL   90 (372)
T ss_pred             hhhccHHHHHHHHHHhhhhhCCCccccHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCcccccccccccccCCCCc-ceec
Confidence            3344566778888643   222    255555555555556666655554443221   0       00  1111 1233


Q ss_pred             HHHHHHHHHHHHHHHHHhhccccchhhhhcchhHHHHHHHHHHHhcccccccccccchhhhHHHHHHHhHhhhhhccCCc
Q 022016           78 FIALLGVTINQNTYFEGLYLASSSMASAMGNLIPAITFVMASIVGLEKIDLGSVRSVAKILGTIFCVGGAISMALLRGPK  157 (304)
Q Consensus        78 ~~g~~~~~~~~~~~~~al~~~~~~~a~~i~~~~Pi~~~lla~l~~~er~~~~~~~~~~~~~g~~l~~~G~~li~~~~~~~  157 (304)
                      ..+++. ..+..+.|.|+++++++.-+++=...-+|+-+++.-+++.+++-+      ||+|+.....|++++-.   .+
T Consensus        91 ~Pal~D-i~gsslm~vgL~lTsASsfQMlRGaviIFvglfst~~Ln~ti~~~------qWl~i~fv~lGlviVg~---~d  160 (372)
T KOG3912|consen   91 PPALCD-IAGSSLMYVGLNLTSASSFQMLRGAVIIFVGLFSTMFLNRTITGR------QWLGILFVSLGLVIVGS---LD  160 (372)
T ss_pred             ChHHHH-HhhhHHHHHHHHHhhHHHHHHhhcchhhhhHHHHHHHHhcccchh------hHHHHHHHHhhhheeee---ee
Confidence            366666 677888899999999999999999999999999999999999999      99999999999998873   11


Q ss_pred             cccccCCccccccccCCCCCchHHHHHHHHHHHHHHHHHHHhHHHHhhcCC-CchhHHHHHHHHHHHHHHHHHH
Q 022016          158 LLNTEFLPEKSFLFRSSGGENWLLGCLFLFASACCWSLWLILQVPVSASYP-DHLSLSAWMCFLATLQSATFAI  230 (304)
Q Consensus       158 ~~~~~~~~~~~~~~~~~~~~~~~~G~~~~l~a~~~~a~~~~~~k~~~~~~~-~~~~~~~~~~~~~~l~~~~~~~  230 (304)
                      .. .   ..|+    .++-+.-..|+++.+.+-+.-|+..+.-.|..++.. +|.....|.-++|.+.+-+.++
T Consensus       161 ~~-~---~~~p----~~d~s~iitGdllIiiaqiivaiQ~v~Eek~l~~~nV~pl~avg~eGlfG~v~~slL~i  226 (372)
T KOG3912|consen  161 VH-L---VTDP----YTDYSSIITGDLLIIIAQIIVAIQMVCEEKQLKKSNVAPLQAVGWEGLFGLVILSLLAI  226 (372)
T ss_pred             cc-c---ccCC----ccccccchhhhHHHHHHHHHHHHHHHHHHhhhhhccCCHHHHhhhhhhHHHHHHHHHHH
Confidence            11 0   0111    123356779999999999999999999988877653 6999999999998655544443

>TIGR00803 nst UDP-galactose transporter

Probab=98.06  E-value=4.8e-05  Score=65.29  Aligned_cols=195  Identities=6%  Similarity=-0.029  Sum_probs=112.6

Q ss_pred             cchhhhhcchhHHHHHHHHHHHhcccccccccccchhhhHHHHHHHhHhhhhhccCCcccc-----cc-CCccccccccC
Q 022016          100 SSMASAMGNLIPAITFVMASIVGLEKIDLGSVRSVAKILGTIFCVGGAISMALLRGPKLLN-----TE-FLPEKSFLFRS  173 (304)
Q Consensus       100 ~~~a~~i~~~~Pi~~~lla~l~~~er~~~~~~~~~~~~~g~~l~~~G~~li~~~~~~~~~~-----~~-~~~~~~~~~~~  173 (304)
                      .......-+..|+++.+..+...+||.+..      |+++..+...|++.....+.+....     .. ....++..+..
T Consensus         4 vPa~~~~~s~~l~~v~l~~~~~~~~~~~~~------~i~~~~l~~~g~l~~~ls~~q~~al~~l~~~~~~~~~~~~~~~~   77 (222)
T TIGR00803         4 VPIHIIFKQNNLVLIALGNLLAAGKQVTQL------KILSTALMTLGSLVASLGDDQWFSLKLLKLGVAIVQMVQSSAKT   77 (222)
T ss_pred             ccchHHHHhcchHHHHHhcccccceeeehH------HHHHHHHHHHHHHHhHhhHHHHHHHHHHHHhHeeeecCCCCccc
Confidence            344556667888888888888889998877      8888888888887544311110000     00 00000000001


Q ss_pred             CCCCchHHHHHHHHHHHHHHHHHHHhHHHHhhcCCCchhHHHHHH-HHHHHHHHHHHHhcCCCc-ccccccCcchHHHHH
Q 022016          174 SGGENWLLGCLFLFASACCWSLWLILQVPVSASYPDHLSLSAWMC-FLATLQSATFAIFTEPDP-EAWNLHSSLEIFCCF  251 (304)
Q Consensus       174 ~~~~~~~~G~~~~l~a~~~~a~~~~~~k~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~~~~~~~-~~~~~~~~~~~~~~~  251 (304)
                      ...++...|....+.+.++-+...++.++..++.+........+. +.+.+...........+. ..+...  ..+....
T Consensus        78 ~~~g~~~~g~~~~l~a~~~~~~~~~y~e~~~k~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~  155 (222)
T TIGR00803        78 LMFGNPVVGLSAVLSALLSSGFAGVYFEKILKDGDTMFWSRNLQLPLFGLFSTFSVLLWSDGTLISNFGFF--IGYPTAV  155 (222)
T ss_pred             cccccHHHHHHHHHHHHHHHhhhHHHHHHcccCCCCchHHHHHHHHHHHHHHHHHHHhhcccchhhccCcc--cCCchHH
Confidence            122356678877888888878888888887665432222222222 222222111111111111 111100  0111111


Q ss_pred             HHHhhccchheeeeeeeecccCceeeeeccchHHHHHHHHHHHHhCCcccc
Q 022016          252 FSGAIGSGVSFCVQAWCISKRGPLFSAMFNPLCTVIVTILAALLLHEEIYT  302 (304)
Q Consensus       252 ~~g~~~~~~~~~l~~~~~~~~~a~~~s~~~~l~pv~a~l~~~~~~~e~~~~  302 (304)
                      +.-++...++..+..+.+|+.++...+....++++.+.+++.+++||+++.
T Consensus       156 ~~~~~~~a~~~~~v~~vlk~~~~~~~~~~~~~~~~~s~lls~~~f~~~ls~  206 (222)
T TIGR00803       156 WIVGLLNVGGGLCIGGVVRYADNTTKSFVTALSIILSTLASVRLFDAKISS  206 (222)
T ss_pred             HHHHHHHHhcCceeeehhHHhHHHHHHHHHHHHHHHHHHHHHHHhcCCccH
Confidence            122234556677899999999999999999999999999999999999875

NSTs generally appear to function by antiport mechanisms, exchanging a nucleotide-sugar for a nucleotide. Thus, CMP-sialic acid is exchanged for CMP; GDP-mannose is preferentially exchanged for GMP, and UDP-galactose and UDP-N-acetylglucosamine are exchanged for UMP (or possibly UDP). Other nucleotide sugars (e.g., GDP-fucose, UDP-xylose, UDP-glucose, UDP-N-acetylgalactosamine, etc.) may also be transported in exchange for various nucleotides, but their transporters have not been molecularly characterized. Each compound appears to be translocated by its own transport protein. Transport allows the compound, synthesized in the cytoplasm, to be exported to the lumen of the Golgi apparatus or the endoplasmic reticulum where it is used for the synthesis of glycoproteins and glycolipids.

>PF03151 TPT: Triose-phosphate Transporter family; InterPro: IPR004853 This family consists entirely of aligned regions from Drosophila melanogaster proteins

Probab=98.01  E-value=1e-05  Score=64.99  Aligned_cols=120  Identities=17%  Similarity=0.139  Sum_probs=93.9

Q ss_pred             HHHHHHHHHHHHHHHHHhHHHHhhc------CCCchhHHHHHHHHHHHHHHHHHHhcCCCcc-----cccc---c-Ccch
Q 022016          182 GCLFLFASACCWSLWLILQVPVSAS------YPDHLSLSAWMCFLATLQSATFAIFTEPDPE-----AWNL---H-SSLE  246 (304)
Q Consensus       182 G~~~~l~a~~~~a~~~~~~k~~~~~------~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~-----~~~~---~-~~~~  246 (304)
                      |.++++.+.++.|++.++.|+..++      ..|+.....+....+.+.+.+.....|....     ....   . ++..
T Consensus         1 G~~~~l~s~~~~al~~v~~~~~~~~~~~~~~~~~~~~l~~~~~~~s~~~l~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~   80 (153)
T PF03151_consen    1 GFILALASSLFSALRNVLIKKLLKKVSSNSKKLNPLNLLYYNSPISFIILLPLAFLLEGPQLSSFFSEIFGEELSSDPNF   80 (153)
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHhcccccccCCCHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHhhhhhhcchHHH
Confidence            6789999999999999999998766      2279999999999999999998887764331     1110   0 2234


Q ss_pred             HHHHHHHHhhccchheeeeeeeecccCceeeeeccchHHHHHHHHHHHHhCCcccc
Q 022016          247 IFCCFFSGAIGSGVSFCVQAWCISKRGPLFSAMFNPLCTVIVTILAALLLHEEIYT  302 (304)
Q Consensus       247 ~~~~~~~g~~~~~~~~~l~~~~~~~~~a~~~s~~~~l~pv~a~l~~~~~~~e~~~~  302 (304)
                      +..++..|+. ...-....+..+++.++...++...+..+..++.+++++||++|.
T Consensus        81 ~~~~~~~~~~-~~~~n~~~f~~i~~tS~lt~~v~~~~K~~~~i~~s~~~f~~~~t~  135 (153)
T PF03151_consen   81 IFLLILSGLL-AFLYNLSSFLLIKLTSPLTYSVLGNVKRILVILLSVIFFGEPITP  135 (153)
T ss_pred             HHHHHHHHHH-HHHHHHHHHHHhhhcChhHHHHHHHHHHHHHHHHHhhhcCCcCCH
Confidence            5555555553 344556667999999999999999999999999999999999885

O49724 from SWISSPROT contains three repeats of this region. In other proteins, the aligned region is located towards the C terminus. The function of the aligned region is unknown.

>COG4975 GlcU Putative glucose uptake permease [Carbohydrate transport and metabolism]

Probab=97.85  E-value=1.1e-06  Score=74.42  Aligned_cols=258  Identities=16%  Similarity=0.108  Sum_probs=159.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHhhhccccCCCCCHHHHHHHHHHHHHHHHHHH
Q 022016            9 PAMAMLALQFSYAVVALSTRAALLQGMNPRVFVVYRQAIATLFMAPMAYLSSRKYKSSSMGLRSFSLIFFIALLGVTINQ   88 (304)
Q Consensus         9 g~~~~l~~~~~~~~~~~~~k~~~~~~~~p~~~~~~R~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~   88 (304)
                      .++.+++-++.||..+..+...   |=+|.+...---+.+.++-+.+.+. .+    |..+.+.+..-++.|++- .+++
T Consensus         3 ~~liaL~P~l~WGsip~v~~k~---GG~p~qQ~lGtT~GALifaiiv~~~-~~----p~~T~~~~iv~~isG~~W-s~GQ   73 (288)
T COG4975           3 DLLIALLPALGWGSIPLVANKF---GGKPYQQTLGTTLGALIFAIIVFLF-VS----PELTLTIFIVGFISGAFW-SFGQ   73 (288)
T ss_pred             hHHHHHHHHHHhcccceeeeec---CCChhHhhhhccHHHHHHHHHHhee-ec----CccchhhHHHHHHhhhHh-hhhh
Confidence            4677888999999998866553   3467766665555555544444332 22    556777777777777775 9999


Q ss_pred             HHHHHHhhccccchhhhhcc-hhHHHHHHHHHHHhcccccccccccchhhhHHHHHHHhHhhhhhccCCccccccCCccc
Q 022016           89 NTYFEGLYLASSSMASAMGN-LIPAITFVMASIVGLEKIDLGSVRSVAKILGTIFCVGGAISMALLRGPKLLNTEFLPEK  167 (304)
Q Consensus        89 ~~~~~al~~~~~~~a~~i~~-~~Pi~~~lla~l~~~er~~~~~~~~~~~~~g~~l~~~G~~li~~~~~~~~~~~~~~~~~  167 (304)
                      ...+.|.++.+++.+..+.+ ++-+-+.+++.+.++|=-+..      +   .++++...+++..  +-.+.-..+++++
T Consensus        74 ~~Qfka~~~iGVSkamPiStG~QLVg~sL~gV~~f~EW~t~~------~---~IlG~iAlilivi--G~~lTs~~~~~nk  142 (288)
T COG4975          74 ANQFKAIQLIGVSKAMPISTGMQLVGTSLFGVFVFHEWTTPT------Q---IILGFIALILIVI--GIYLTSKQDRNNK  142 (288)
T ss_pred             hhhhhheeeeeeeccccccchhhHhhceeeeEEEEeccCcch------h---HHHHHHHHHHHHH--hheEeeeeccccc
Confidence            99999999999999999997 555678889999999976654      3   3344444444432  1100000111112


Q ss_pred             cccccCCCCCchHHHHHHHHHHHHHHHHHHHhHHHHhhcCCCchhHHHHHHHHHHHHHHHHHHhcCCCcccccccCcchH
Q 022016          168 SFLFRSSGGENWLLGCLFLFASACCWSLWLILQVPVSASYPDHLSLSAWMCFLATLQSATFAIFTEPDPEAWNLHSSLEI  247 (304)
Q Consensus       168 ~~~~~~~~~~~~~~G~~~~l~a~~~~a~~~~~~k~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~  247 (304)
                      +    .++.++.-+|....+.+++.|-.|.++.+...-+.-+.....+..+.++++.+....    .+...    .+..|
T Consensus       143 ~----~~~~~n~kkgi~~L~iSt~GYv~yvvl~~~f~v~g~saiLPqAiGMv~~ali~~~~~----~~~~~----~K~t~  210 (288)
T COG4975         143 E----EENPSNLKKGIVILLISTLGYVGYVVLFQLFDVDGLSAILPQAIGMVIGALILGFFK----MEKRF----NKYTW  210 (288)
T ss_pred             c----ccChHhhhhheeeeeeeccceeeeEeeeccccccchhhhhHHHHHHHHHHHHHhhcc----cccch----HHHHH
Confidence            1    134556779999999999999999999887643322455555555655555443221    11111    11112


Q ss_pred             HHHHHHHhhccchheeeeeeeecccCceeeeeccchHHHHHHHHHHHHhCCcc
Q 022016          248 FCCFFSGAIGSGVSFCVQAWCISKRGPLFSAMFNPLCTVIVTILAALLLHEEI  300 (304)
Q Consensus       248 ~~~~~~g~~~~~~~~~l~~~~~~~~~a~~~s~~~~l~pv~a~l~~~~~~~e~~  300 (304)
                      .- ...|+ .=+++...+.++.++.+.+..=.+.-+..+++.+=+.++++|+=
T Consensus       211 ~n-ii~G~-~Wa~GNl~ml~a~~~~GvAt~FSlSQlgViisTiGGIl~L~ekK  261 (288)
T COG4975         211 LN-IIPGL-IWAIGNLFMLLAAQKVGVATSFSLSQLGVIISTIGGILFLGEKK  261 (288)
T ss_pred             HH-HhhHH-HHHhhHHHHHHhhhhhceeeeeeHhhheeeeeecceEEEEeccC
Confidence            21 22222 12345566677777777666655666666777777777777763

>PF06800 Sugar_transport: Sugar transport protein; InterPro: IPR010651 This is a family of bacterial sugar transporters approximately 300 residues long

Probab=97.81  E-value=0.00038  Score=60.90  Aligned_cols=133  Identities=16%  Similarity=0.061  Sum_probs=94.3

Q ss_pred             cchHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHhhhccccCCCCCHHHHHHHHHHHHHHH
Q 022016            5 RDYKPAMAMLALQFSYAVVALSTRAALLQGMNPRVFVVYRQAIATLFMAPMAYLSSRKYKSSSMGLRSFSLIFFIALLGV   84 (304)
Q Consensus         5 ~~~~g~~~~l~~~~~~~~~~~~~k~~~~~~~~p~~~~~~R~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~   84 (304)
                      +..|+++.+++.++.|....++.|..   +++|....+-....-.+....+.... +++.    ..|+...-+..|++- 
T Consensus       135 ~~~kgi~~Ll~stigy~~Y~~~~~~~---~~~~~~~~lPqaiGm~i~a~i~~~~~-~~~~----~~k~~~~nil~G~~w-  205 (269)
T PF06800_consen  135 NMKKGILALLISTIGYWIYSVIPKAF---HVSGWSAFLPQAIGMLIGAFIFNLFS-KKPF----FEKKSWKNILTGLIW-  205 (269)
T ss_pred             chhhHHHHHHHHHHHHHHHHHHHHhc---CCChhHhHHHHHHHHHHHHHHHhhcc-cccc----cccchHHhhHHHHHH-
Confidence            45679999999999999999998883   37887777755443333333333322 2221    233444456677775 


Q ss_pred             HHHHHHHHHHhhccccchhhhhcchhHHHHHHHHHHHhcccccccccccchhhhHHHHHHHhHh
Q 022016           85 TINQNTYFEGLYLASSSMASAMGNLIPAITFVMASIVGLEKIDLGSVRSVAKILGTIFCVGGAI  148 (304)
Q Consensus        85 ~~~~~~~~~al~~~~~~~a~~i~~~~Pi~~~lla~l~~~er~~~~~~~~~~~~~g~~l~~~G~~  148 (304)
                      ..++.+++.|.+..+.+.+-.+..+.++...+.+.+++||+-++++.  ...+.|+++.+.|.+
T Consensus       206 ~ignl~~~is~~~~G~a~af~lSQ~~vvIStlgGI~il~E~Kt~ke~--~~~~~G~~Liv~G~i  267 (269)
T PF06800_consen  206 GIGNLFYLISAQKNGVATAFTLSQLGVVISTLGGIFILKEKKTKKEM--IYTLIGLILIVIGAI  267 (269)
T ss_pred             HHHHHHHHHhHHhccchhhhhHHhHHHHHHHhhhheEEEecCchhhH--HHHHHHHHHHHHhhh
Confidence            99999999999999999999999999999999999999999988711  112344444545544

Members include glucose uptake proteins [], ribose transport proteins, and several putative and hypothetical membrane proteins probably involved in sugar transport across bacterial membranes.; GO: 0015144 carbohydrate transmembrane transporter activity, 0034219 carbohydrate transmembrane transport, 0016021 integral to membrane

>PF08449 UAA: UAA transporter family; InterPro: IPR013657 This family includes transporters with a specificity for UDP-N-acetylglucosamine []

Probab=97.73  E-value=0.00079  Score=60.61  Aligned_cols=137  Identities=12%  Similarity=0.156  Sum_probs=111.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHh-cCCChHHHHHHHHHHHHHHHHHHHHh--hhcccc---CCCCCHHHHHHHHHHHHH
Q 022016            9 PAMAMLALQFSYAVVALSTRAALL-QGMNPRVFVVYRQAIATLFMAPMAYL--SSRKYK---SSSMGLRSFSLIFFIALL   82 (304)
Q Consensus         9 g~~~~l~~~~~~~~~~~~~k~~~~-~~~~p~~~~~~R~~~a~~~l~~~~~~--~~~~~~---~~~~~~~~~~~~~~~g~~   82 (304)
                      |+++++++.++-|...+..+...+ ++.++.+..++-...+.+..++....  .+....   ....++..+...+...+.
T Consensus       155 G~~ll~~sl~~~a~~~~~qe~~~~~~~~~~~~~mfy~n~~~~~~~~~~~~~l~~~~~~~~~~f~~~~p~~~~~l~~~s~~  234 (303)
T PF08449_consen  155 GIILLLLSLLLDAFTGVYQEKLFKKYGKSPWELMFYTNLFSLPFLLILLFLLPTGEFRSAIRFISAHPSVLLYLLLFSLT  234 (303)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHHHHhhHhhHHHHHHHHhHHHHHHHHHHHHH
Confidence            999999999999999999999875 35899999999999999988776655  221110   001123445556666666


Q ss_pred             HHHHHHHHHHHHhhccccchhhhhcchhHHHHHHHHHHHhcccccccccccchhhhHHHHHHHhHhhhhh
Q 022016           83 GVTINQNTYFEGLYLASSSMASAMGNLIPAITFVMASIVGLEKIDLGSVRSVAKILGTIFCVGGAISMAL  152 (304)
Q Consensus        83 ~~~~~~~~~~~al~~~~~~~a~~i~~~~Pi~~~lla~l~~~er~~~~~~~~~~~~~g~~l~~~G~~li~~  152 (304)
                      + .+++.+.+.-.++.++...+++..+--.++.+++..++++++++.      ++.|+++.+.|..+-..
T Consensus       235 ~-~~g~~~i~~~~~~~~al~~t~v~t~Rk~~sillS~~~f~~~~~~~------~~~G~~lv~~g~~~~~~  297 (303)
T PF08449_consen  235 G-ALGQFFIFYLIKKFSALTTTIVTTLRKFLSILLSVIIFGHPLSPL------QWIGIVLVFAGIFLYSY  297 (303)
T ss_pred             H-HHHHHHHHHHHHhcCchhhhhHHHHHHHHHHHHHHHhcCCcCChH------HHHHHHHhHHHHHHHHH
Confidence            6 777788888899999999999999999999999999999999999      99999999999998874

; GO: 0055085 transmembrane transport

>PF04657 DUF606: Protein of unknown function, DUF606; InterPro: IPR006750 This family contains uncharacterised bacterial proteins

Probab=97.62  E-value=0.0015  Score=51.65  Aligned_cols=130  Identities=12%  Similarity=0.084  Sum_probs=97.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhcCCC-hHHHHHHHHHHHHHHHHHHHHhhhccccCCCCCHHHHHHHHHHHHHHHHHHH
Q 022016           10 AMAMLALQFSYAVVALSTRAALLQGMN-PRVFVVYRQAIATLFMAPMAYLSSRKYKSSSMGLRSFSLIFFIALLGVTINQ   88 (304)
Q Consensus        10 ~~~~l~~~~~~~~~~~~~k~~~~~~~~-p~~~~~~R~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~   88 (304)
                      ++..+.+...-+....++-...++ .+ |..-.++-+..+.+.+..+....+++.. ++.+.. -++...-|+++ ...-
T Consensus         3 ~lla~~aG~~i~~q~~~N~~L~~~-~gs~~~as~i~~~~G~i~~~i~~~~~~~~~~-~~~~~~-p~w~~lGG~lG-~~~V   78 (138)
T PF04657_consen    3 ILLALLAGALIALQAAFNGQLGKA-LGSPLVASFISFGVGFILLLIILLITGRPSL-ASLSSV-PWWAYLGGLLG-VFFV   78 (138)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHH-hCccHHHHHHHHHHHHHHHHHHHHHhccccc-chhccC-ChHHhccHHHH-HHHH
Confidence            456777788888888888777665 65 9999999999999998887776555433 322222 23445578887 8888


Q ss_pred             HHHHHHhhccccchhhhhcchhHH-HHHHHHHH----HhcccccccccccchhhhHHHHHHHhHhh
Q 022016           89 NTYFEGLYLASSSMASAMGNLIPA-ITFVMASI----VGLEKIDLGSVRSVAKILGTIFCVGGAIS  149 (304)
Q Consensus        89 ~~~~~al~~~~~~~a~~i~~~~Pi-~~~lla~l----~~~er~~~~~~~~~~~~~g~~l~~~G~~l  149 (304)
                      .+......+.+++.+..+.-+--+ ...++.++    .-|+|++++      |++|+.+.+.|+++
T Consensus        79 ~~~~~~vp~lG~~~~~~l~~~GQl~~sl~iD~fG~fg~~~~~~~~~------r~lG~~l~i~Gv~L  138 (138)
T PF04657_consen   79 LSNIILVPRLGAALTTILIVAGQLIASLLIDHFGLFGAPKRPFSLR------RILGLALMIAGVIL  138 (138)
T ss_pred             HHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHccccCCCCCCCCHH------HHHHHHHHHHHHhC
Confidence            889999999999988888866554 45555554    357888888      99999999999864

>COG2962 RarD Predicted permeases [General function prediction only]

Probab=97.48  E-value=0.0048  Score=54.08  Aligned_cols=130  Identities=11%  Similarity=0.096  Sum_probs=102.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHhhhcccc-CCCCCHHHHHHHHHHHHHHHHHHHHHH
Q 022016           13 MLALQFSYAVVALSTRAALLQGMNPRVFVVYRQAIATLFMAPMAYLSSRKYK-SSSMGLRSFSLIFFIALLGVTINQNTY   91 (304)
Q Consensus        13 ~l~~~~~~~~~~~~~k~~~~~~~~p~~~~~~R~~~a~~~l~~~~~~~~~~~~-~~~~~~~~~~~~~~~g~~~~~~~~~~~   91 (304)
                      .+..++.|+..+..=|..   ++|+.+=...-...-.+..+.+..+...... ...-+...+..+...|.+. .+...++
T Consensus       153 al~la~sf~~Ygl~RK~~---~v~a~~g~~lE~l~l~p~al~yl~~l~~~~~~~~~~~~~~~~LLv~aG~vT-avpL~lf  228 (293)
T COG2962         153 ALALALSFGLYGLLRKKL---KVDALTGLTLETLLLLPVALIYLLFLADSGQFLQQNANSLWLLLVLAGLVT-AVPLLLF  228 (293)
T ss_pred             HHHHHHHHHHHHHHHHhc---CCchHHhHHHHHHHHhHHHHHHHHHHhcCchhhhcCCchHHHHHHHhhHHH-HHHHHHH
Confidence            455677888888777775   3777777766666666665555544333220 0112467778888889997 9999999


Q ss_pred             HHHhhccccchhhhhcchhHHHHHHHHHHHhcccccccccccchhhhHHHHHHHhHhhhhh
Q 022016           92 FEGLYLASSSMASAMGNLIPAITFVMASIVGLEKIDLGSVRSVAKILGTIFCVGGAISMAL  152 (304)
Q Consensus        92 ~~al~~~~~~~a~~i~~~~Pi~~~lla~l~~~er~~~~~~~~~~~~~g~~l~~~G~~li~~  152 (304)
                      ..|-+++|-+..+++++..|....+++.++++|+++.-      |...-+..-.|.++...
T Consensus       229 ~~aa~~lpls~~G~lqYi~Ptl~fllav~i~~E~~~~~------~~~~F~~IW~aL~l~~~  283 (293)
T COG2962         229 AAAAKRLPLSTLGFLQYIEPTLMFLLAVLIFGEPFDSD------QLVTFAFIWLALALFSI  283 (293)
T ss_pred             HHHHhcCCHHHHHHHHHHHHHHHHHHHHHHcCCCCCHH------HHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999998      99999999999988873

>PRK13499 rhamnose-proton symporter; Provisional

Probab=97.44  E-value=0.0075  Score=54.94  Aligned_cols=146  Identities=11%  Similarity=-0.053  Sum_probs=97.1

Q ss_pred             cchHHHHHHHHHHHHHHHHH-------HHHHHHHhcCCChHHHHHHHHH---HHHHH-HHHHHHhhh-c-ccc----CCC
Q 022016            5 RDYKPAMAMLALQFSYAVVA-------LSTRAALLQGMNPRVFVVYRQA---IATLF-MAPMAYLSS-R-KYK----SSS   67 (304)
Q Consensus         5 ~~~~g~~~~l~~~~~~~~~~-------~~~k~~~~~~~~p~~~~~~R~~---~a~~~-l~~~~~~~~-~-~~~----~~~   67 (304)
                      +..||++.++++.++.+...       +..+...+.|.++.....-..+   ++..+ .+.++.+.. | ++.    .++
T Consensus       171 ~~~KGi~ialisgi~~~~f~~~~~~~~~~~~~a~~~g~~~~~~~lp~~~~~~~G~~~~n~~~~~~~~~k~~~~~~~~~~~  250 (345)
T PRK13499        171 NLKKGLILAVMSGIFSACFSFAMDAGKPMHEAAAALGVDPLYAALPSYVVIMGGGAITNLGFCFIRLAKNKDLSLKADFS  250 (345)
T ss_pred             chHhHHHHHHHHHHHHHHHHHHHhhccchhhhhhhcCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCcccchhcc
Confidence            45789999999999999999       7777766667888877766665   33333 333333221 1 111    011


Q ss_pred             CCHHHHHH----HHHHHHHHHHHHHHHHHHHhhccccchhhh---hcchhH-HHHHHHHHHHhcccccccccccchhhhH
Q 022016           68 MGLRSFSL----IFFIALLGVTINQNTYFEGLYLASSSMASA---MGNLIP-AITFVMASIVGLEKIDLGSVRSVAKILG  139 (304)
Q Consensus        68 ~~~~~~~~----~~~~g~~~~~~~~~~~~~al~~~~~~~a~~---i~~~~P-i~~~lla~l~~~er~~~~~~~~~~~~~g  139 (304)
                      .+++.+.+    ..+.|+.- ...+.++..|-...+.+.+..   +....+ ++..+-+. ++||+-+..|.....-+.|
T Consensus       251 ~~~~~~~~n~l~~~l~G~~W-~~~~~~y~~~~~~~g~~~~~~sw~l~m~~~ViistlwGi-~lkE~K~a~~k~~~~l~~G  328 (345)
T PRK13499        251 LAKPLLITNVLLSALAGVMW-YLQFFFYAMGHSKLGAQYDFVSWMLHMSFYVLCGNLWGL-VLKEWKGASRRPVRVLSLG  328 (345)
T ss_pred             ccchhHHHHHHHHHHHHHHH-HHHHHHHHHHHHHcCCccchHHHHHhccHHHHHHHHhhh-hhhhccCCCccchhHHHHH
Confidence            22222222    35556564 888889999999887766655   554555 45555555 6999999666677778999


Q ss_pred             HHHHHHhHhhhhh
Q 022016          140 TIFCVGGAISMAL  152 (304)
Q Consensus       140 ~~l~~~G~~li~~  152 (304)
                      +++.++|.+++.+
T Consensus       329 ~vliI~g~~lig~  341 (345)
T PRK13499        329 CVVIILAANIVGL  341 (345)
T ss_pred             HHHHHHHHHHHhh
Confidence            9999999999875

>KOG2922 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.40  E-value=0.00012  Score=64.58  Aligned_cols=251  Identities=12%  Similarity=0.192  Sum_probs=144.7

Q ss_pred             cchHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHhhhccccCCCCCHHHHHHHHHHHHHHH
Q 022016            5 RDYKPAMAMLALQFSYAVVALSTRAALLQGMNPRVFVVYRQAIATLFMAPMAYLSSRKYKSSSMGLRSFSLIFFIALLGV   84 (304)
Q Consensus         5 ~~~~g~~~~l~~~~~~~~~~~~~k~~~~~~~~p~~~~~~R~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~   84 (304)
                      ++.+|...++...+.-|.+..+-|....+           ...       -...-.+.+. +.+  +.  +.+..|.+.+
T Consensus        18 d~~~G~~LaissS~~Ig~sfilkKkgl~r-----------~~~-------~~~ra~~gg~-~yl--~~--~~Ww~G~ltm   74 (335)
T KOG2922|consen   18 DNIIGLVLAISSSIFIGSSFILKKKGLKR-----------AGA-------SGLRAGEGGY-GYL--KE--PLWWAGMLTM   74 (335)
T ss_pred             CceeeeeehhhccEEEeeehhhhHHHHHH-----------Hhh-------hcccccCCCc-chh--hh--HHHHHHHHHH
Confidence            46667778888888888888888887754           111       0000011111 211  22  4556899999


Q ss_pred             HHHHHHHHHHhhccccchhhhhcchhHHHHHHHHHHHhcccccccccccchhhhHHHHHHHhHhhhhhccCCccccccCC
Q 022016           85 TINQNTYFEGLYLASSSMASAMGNLIPAITFVMASIVGLEKIDLGSVRSVAKILGTIFCVGGAISMALLRGPKLLNTEFL  164 (304)
Q Consensus        85 ~~~~~~~~~al~~~~~~~a~~i~~~~Pi~~~lla~l~~~er~~~~~~~~~~~~~g~~l~~~G~~li~~~~~~~~~~~~~~  164 (304)
                      .++...-|.|+.+.|++..+.+..+.-+..++++..++|||+++.      -.+|+.++++|..+++. +.|+-..-   
T Consensus        75 ~vGei~NFaAYaFAPasLVtPLGAlsvi~saila~~~L~Ekl~~~------g~lGc~l~v~Gst~iV~-haP~e~~i---  144 (335)
T KOG2922|consen   75 IVGEIANFAAYAFAPASLVTPLGALSVIISAILASFFLKEKLNLL------GILGCVLCVVGSTTIVI-HAPKEQEI---  144 (335)
T ss_pred             HHHhHhhHHHHhhchHhhhccchhHHHHHHHHHHHHHHHHHHHHh------hhhheeEEecccEEEEE-ecCccccc---
Confidence            999999999999999999999999999999999999999999999      99999999999999985 33432110   


Q ss_pred             ccccccccCCCCCchHHHHHHHHHHHHHHHHHHHhHHHHhhcCCCchhHHHHHHHHHHHHHH----------HHHHhcCC
Q 022016          165 PEKSFLFRSSGGENWLLGCLFLFASACCWSLWLILQVPVSASYPDHLSLSAWMCFLATLQSA----------TFAIFTEP  234 (304)
Q Consensus       165 ~~~~~~~~~~~~~~~~~G~~~~l~a~~~~a~~~~~~k~~~~~~~~~~~~~~~~~~~~~l~~~----------~~~~~~~~  234 (304)
                      .+.++..+--.+...+.-..+.++ .++.=  ....|   +++ ....+..|....+.+-.+          .+-....+
T Consensus       145 ~t~~el~~~~~~~~Fliy~~~iil-~~~il--~~~~~---p~~-g~tnilvyi~i~s~iGS~tV~svKalg~aiklt~~g  217 (335)
T KOG2922|consen  145 ESVEEVWELATEPGFLVYVIIIIL-IVLIL--IFFYA---PRY-GQTNILVYIGICSLIGSLTVMSVKALGIAIKLTFSG  217 (335)
T ss_pred             ccHHHHHHHhcCccHHHHHHHHHH-HHHHH--heeec---ccc-cccceeehhhHhhhhcceeeeeHHHHHHHHHHHhcC
Confidence            000110000112222222222211 11111  11112   222 122233333333333211          11111111


Q ss_pred             CcccccccCcchHHHHHHHHhhccchheeeeeeeecccCceeeeeccchH-HHHHHHHHHHHhCCc
Q 022016          235 DPEAWNLHSSLEIFCCFFSGAIGSGVSFCVQAWCISKRGPLFSAMFNPLC-TVIVTILAALLLHEE  299 (304)
Q Consensus       235 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~~l~~~~~~~~~a~~~s~~~~l~-pv~a~l~~~~~~~e~  299 (304)
                      +.+   ...+..|..++.... +......-.+++++.-+++.++++.+.. ..++++-+.++|+|-
T Consensus       218 ~~q---l~~~~ty~~~l~~~~-~~~~Q~~yLNkAL~~fntslV~PiyyV~fTtl~I~as~I~Fkew  279 (335)
T KOG2922|consen  218 NNQ---LFYPLTWIFLLVVAT-CVSTQMNYLNKALDLFNTSIVSPIYYVMFTTLVILASAILFKEW  279 (335)
T ss_pred             Ccc---cccHHHHHHHHHHHH-HHHHHHHHHHHHHHhhhhhhcchhHHHHHHHHHHHHHHHHHHHh
Confidence            221   112234444444433 3334344458999999999998887764 456666777777774

>KOG1582 consensus UDP-galactose transporter related protein [Carbohydrate transport and metabolism]

Probab=97.39  E-value=0.00086  Score=57.93  Aligned_cols=206  Identities=11%  Similarity=0.057  Sum_probs=142.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhhccccchhhhhcchhHHHHHHHHHHHhcccccccccccchhhhHHHHHHHhHhhh
Q 022016           71 RSFSLIFFIALLGVTINQNTYFEGLYLASSSMASAMGNLIPAITFVMASIVGLEKIDLGSVRSVAKILGTIFCVGGAISM  150 (304)
Q Consensus        71 ~~~~~~~~~g~~~~~~~~~~~~~al~~~~~~~a~~i~~~~Pi~~~lla~l~~~er~~~~~~~~~~~~~g~~l~~~G~~li  150 (304)
                      ..|+.+..++.+. .....+..-++.|.+=..-.++-.+--+=+.+.+.++-+.|-++.      +..+..+-.+|.++.
T Consensus       104 iP~rtY~~la~~t-~gtmGLsn~SlgYLNYPtQviFKccKliPVmiggifIqGkRY~v~------d~~aA~lm~lGli~F  176 (367)
T KOG1582|consen  104 IPWRTYVILAFLT-VGTMGLSNGSLGYLNYPTQVIFKCCKLIPVMIGGIFIQGKRYGVH------DYIAAMLMSLGLIWF  176 (367)
T ss_pred             cchhHhhhhHhhh-hhccccCcCccccccCcHHHHHHhhhhhhhhheeeeeccccccHH------HHHHHHHHHHHHHhh
Confidence            3366666677775 556677777888877553333444444445678888889998887      999999999999999


Q ss_pred             hhccCCccccccCCccccccccCCCCCchHHHHHHHHHHHHHHHHHHHhHHHHhhcCC-CchhHHHHHHHHHHHHHHHHH
Q 022016          151 ALLRGPKLLNTEFLPEKSFLFRSSGGENWLLGCLFLFASACCWSLWLILQVPVSASYP-DHLSLSAWMCFLATLQSATFA  229 (304)
Q Consensus       151 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~l~a~~~~a~~~~~~k~~~~~~~-~~~~~~~~~~~~~~l~~~~~~  229 (304)
                      .+.+.                 +.+.+.+..|..+.-.|-++-|+-..++.+..+.+| +......+...+|.+......
T Consensus       177 TLADs-----------------~~sPNF~~~Gv~mIsgALl~DA~iGNvQEk~m~~~~~ss~EmvfySy~iG~vflf~~m  239 (367)
T KOG1582|consen  177 TLADS-----------------QTSPNFNLIGVMMISGALLADAVIGNVQEKAMKMNPASSSEMVFYSYGIGFVFLFAPM  239 (367)
T ss_pred             hhccc-----------------ccCCCcceeeHHHHHHHHHHHHHhhHHHHHHHhhCCCCcceEEEeeecccHHHHHHHH
Confidence            86321                 134556779998888888888998889988887765 455666777778888777666


Q ss_pred             HhcCCCcccccc---cCcchHHHHHHHHhhccchheeeeeeeecccCceeeeeccchHHHHHHHHHHHHhCCccc
Q 022016          230 IFTEPDPEAWNL---HSSLEIFCCFFSGAIGSGVSFCVQAWCISKRGPLFSAMFNPLCTVIVTILAALLLHEEIY  301 (304)
Q Consensus       230 ~~~~~~~~~~~~---~~~~~~~~~~~~g~~~~~~~~~l~~~~~~~~~a~~~s~~~~l~pv~a~l~~~~~~~e~~~  301 (304)
                      ..++...+.|+.   ++.......+..+. .+.++...-..-++..||..++.+....--+++++++++|..++|
T Consensus       240 vlTge~f~a~~fcaehp~~tyGy~~~~s~-~gylG~~~VLalI~~fGA~~aatvTTaRKavTi~lSfllFsKPfT  313 (367)
T KOG1582|consen  240 VLTGELFSAWTFCAEHPVRTYGYAFLFSL-AGYLGIVFVLALIKLFGALIAATVTTARKAVTILLSFLLFSKPFT  313 (367)
T ss_pred             HhcccchhhhHHHHhCcHhHHHHHHHHHH-HhHhhHHHHHHHHHHhchhHHHHHHHhHhHHHHHHHHHHHcCchH
Confidence            655543333322   11112233222222 333444444556778899999999999999999999999998876

>PF13536 EmrE: Multidrug resistance efflux transporter

Probab=97.31  E-value=7.2e-05  Score=57.11  Aligned_cols=86  Identities=13%  Similarity=0.230  Sum_probs=60.7

Q ss_pred             HHHHHHHHHHHHHHHhcCCCcccccccCcchHHHHHHHHhhccchheeeeeeeecccCceeeeeccchHHHHHHHHHHHH
Q 022016          216 WMCFLATLQSATFAIFTEPDPEAWNLHSSLEIFCCFFSGAIGSGVSFCVQAWCISKRGPLFSAMFNPLCTVIVTILAALL  295 (304)
Q Consensus       216 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~l~~~~~~~~~a~~~s~~~~l~pv~a~l~~~~~  295 (304)
                      ++..++.+....+.....+..+.++....+.+...+..|+++...++.++.++.++.++ .++++..+.|+++.+++.++
T Consensus         3 ~r~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~a~~~~~~-~v~~i~~~~pi~~~ll~~~~   81 (113)
T PF13536_consen    3 FRYLFSVLFLLIILLIRGRLRDLFRALRRKPWLWLILAGLLGFGVAYLLFFYALSYAPA-LVAAIFSLSPIFTALLSWLF   81 (113)
T ss_pred             HHHHHHHHHHHHHHHHHccHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHhCcH-HHHHHHHHHHHHHHHHHHHH
Confidence            45556666666655543322111111112345556666776667889999999999995 88899999999999999999


Q ss_pred             hCCcccc
Q 022016          296 LHEEIYT  302 (304)
Q Consensus       296 ~~e~~~~  302 (304)
                      ++|+++.
T Consensus        82 ~~er~~~   88 (113)
T PF13536_consen   82 FKERLSP   88 (113)
T ss_pred             hcCCCCH
Confidence            9999875

>PRK10452 multidrug efflux system protein MdtJ; Provisional

Probab=97.30  E-value=0.0011  Score=50.90  Aligned_cols=69  Identities=14%  Similarity=0.087  Sum_probs=61.3

Q ss_pred             HHHHHHHHHHHHHHHHHhhccccchhhhhc-chhHHHHHHHHHHHhcccccccccccchhhhHHHHHHHhHhhhhh
Q 022016           78 FIALLGVTINQNTYFEGLYLASSSMASAMG-NLIPAITFVMASIVGLEKIDLGSVRSVAKILGTIFCVGGAISMAL  152 (304)
Q Consensus        78 ~~g~~~~~~~~~~~~~al~~~~~~~a~~i~-~~~Pi~~~lla~l~~~er~~~~~~~~~~~~~g~~l~~~G~~li~~  152 (304)
                      ...+..++++..++..++++.|.+.+-.+. ..--+.+.+.+++++||++++.      ++.|+.+.+.|++.+-.
T Consensus        34 ~~~i~~~~~sf~~ls~al~~lplsiAYavw~GiG~v~~~~ig~~~f~E~~s~~------~~~gi~lIi~GVi~l~l  103 (120)
T PRK10452         34 ILMLVMISLSYIFLSFAVKKIALGVAYALWEGIGILFITLFSVLLFDESLSLM------KIAGLTTLVAGIVLIKS  103 (120)
T ss_pred             HHHHHHHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHHHHhCCCCCHH------HHHHHHHHHHHHHHhhc
Confidence            345566688999999999999999998886 5788899999999999999999      99999999999998874

>PRK02971 4-amino-4-deoxy-L-arabinose-phosphoundecaprenol flippase subunit ArnF; Provisional

Probab=97.26  E-value=0.00023  Score=55.62  Aligned_cols=102  Identities=17%  Similarity=0.044  Sum_probs=74.9

Q ss_pred             HHHHHHHHHHHHHHHHHHhHHHHhhcCCCchhHHHHHHHHHHHHHHHHHHhcCCCcccccccCcchHHHHHHHHhhccch
Q 022016          181 LGCLFLFASACCWSLWLILQVPVSASYPDHLSLSAWMCFLATLQSATFAIFTEPDPEAWNLHSSLEIFCCFFSGAIGSGV  260 (304)
Q Consensus       181 ~G~~~~l~a~~~~a~~~~~~k~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~  260 (304)
                      .|.++.+.+.++-+...++-|+-.++.+ +...... .    ... ....     .         .-...++.|++++++
T Consensus         2 ~~~~~i~~sv~l~~~gQl~~K~g~~~~g-~~~~~~~-~----~~~-~~~~-----~---------~p~~~i~lgl~~~~l   60 (129)
T PRK02971          2 MGYLWGLASVLLASVAQLSLKWGMSRLP-LLSHAWD-F----IAA-LLAF-----G---------LALRAVLLGLAGYAL   60 (129)
T ss_pred             ccHHHHHHHHHHHHHHHHHHHHHHhhCC-CccchhH-H----HHH-HHHH-----h---------ccHHHHHHHHHHHHH
Confidence            4778888998898999999999887764 2221111 0    000 0000     0         011246788889999


Q ss_pred             heeeeeeeecccCceeeeeccchHHHHHHHHHHH--HhCCccccC
Q 022016          261 SFCVQAWCISKRGPLFSAMFNPLCTVIVTILAAL--LLHEEIYTG  303 (304)
Q Consensus       261 ~~~l~~~~~~~~~a~~~s~~~~l~pv~a~l~~~~--~~~e~~~~~  303 (304)
                      ++.+|.+++++.|.+.+.++..+.++...+.++.  ++||++|+.
T Consensus        61 a~~~w~~aL~~~~ls~Ayp~~sl~~~~v~~~~~~~~~~~E~ls~~  105 (129)
T PRK02971         61 SMLCWLKALRYLPLSRAYPLLSLSYALVYLAAMLLPWFNETFSLK  105 (129)
T ss_pred             HHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHHHcCCCCCHH
Confidence            9999999999999999999999999888888885  899999864

>KOG1441 consensus Glucose-6-phosphate/phosphate and phosphoenolpyruvate/phosphate antiporter [Carbohydrate transport and metabolism; Amino acid transport and metabolism]

Probab=97.26  E-value=0.0011  Score=59.50  Aligned_cols=138  Identities=12%  Similarity=0.187  Sum_probs=111.5

Q ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHHh---cCCChHHHHHHHHHHHHHHHH-HHHHhhhcccc---CC-CCCHHHHHHHH
Q 022016            6 DYKPAMAMLALQFSYAVVALSTRAALL---QGMNPRVFVVYRQAIATLFMA-PMAYLSSRKYK---SS-SMGLRSFSLIF   77 (304)
Q Consensus         6 ~~~g~~~~l~~~~~~~~~~~~~k~~~~---~~~~p~~~~~~R~~~a~~~l~-~~~~~~~~~~~---~~-~~~~~~~~~~~   77 (304)
                      +..|...+..+.+..+.-.++.|..+.   +.+|+++...+-.-.+...++ |+....+....   .. ..+.. .....
T Consensus       161 n~~G~i~a~~s~~~~al~~I~~~~ll~~~~~~~~~~~ll~y~ap~s~~~Ll~P~~~~~~~~~~~~~~~~~~~~~-~~~~~  239 (316)
T KOG1441|consen  161 NLFGFISAMISNLAFALRNILSKKLLTSKGESLNSMNLLYYTAPISLIFLLIPFLDYVEGNKFVGFLTAPWFVT-FLILL  239 (316)
T ss_pred             cHHHHHHHHHHHHHHHHHHHHHHHhhhccccccCchHHHHHhhhHHHHHHhcchHhhhcccceeeeeccccchh-hHHHH
Confidence            678999999999999999999999984   349999999999999999988 87765443221   11 22333 33333


Q ss_pred             HHHHHHHHHHHHHHHHHhhccccchhhhhcchhHHHHHHHHHHHhcccccccccccchhhhHHHHHHHhHhhhh
Q 022016           78 FIALLGVTINQNTYFEGLYLASSSMASAMGNLIPAITFVMASIVGLEKIDLGSVRSVAKILGTIFCVGGAISMA  151 (304)
Q Consensus        78 ~~g~~~~~~~~~~~~~al~~~~~~~a~~i~~~~Pi~~~lla~l~~~er~~~~~~~~~~~~~g~~l~~~G~~li~  151 (304)
                      ....+. ...+...|..+.++++-+-++....--..+++.++++++|+.++.      +..|..+++.|+++-.
T Consensus       240 ~~sv~~-f~~Nls~f~~ig~tSalT~~V~g~~K~~~vi~~s~~iF~~pvt~~------n~~G~~iai~Gv~~Y~  306 (316)
T KOG1441|consen  240 LNSVLA-FLLNLSAFLVIGRTSALTYSVAGHMKRIVVIVVSWLIFGNPVTFL------NALGYAIAILGVFLYS  306 (316)
T ss_pred             HHHHHH-HHHHHHHHHHHcccCchhhhhhccceEEEEEEeEeeeecCCCchh------hHHHHHHHHHHHHHHH
Confidence            444554 677888899999999999999999888889999999999999999      9999999999999877

>PRK09541 emrE multidrug efflux protein; Reviewed

Probab=97.24  E-value=0.0016  Score=49.29  Aligned_cols=68  Identities=13%  Similarity=0.125  Sum_probs=59.9

Q ss_pred             HHHHHHHHHHHHHHHHhhccccchhhhhcc-hhHHHHHHHHHHHhcccccccccccchhhhHHHHHHHhHhhhhh
Q 022016           79 IALLGVTINQNTYFEGLYLASSSMASAMGN-LIPAITFVMASIVGLEKIDLGSVRSVAKILGTIFCVGGAISMAL  152 (304)
Q Consensus        79 ~g~~~~~~~~~~~~~al~~~~~~~a~~i~~-~~Pi~~~lla~l~~~er~~~~~~~~~~~~~g~~l~~~G~~li~~  152 (304)
                      ..+.+++.+..++..++++.|.+.+-.+-. ..-+.+.+.+++++||++++.      ++.|+.+.+.|++.+-+
T Consensus        35 ~~~~~~~~sf~~l~~al~~ipl~iAYavw~GlG~v~~~l~g~~~f~e~~~~~------~~~gi~lIi~GVi~l~l  103 (110)
T PRK09541         35 GTIICYCASFWLLAQTLAYIPTGIAYAIWSGVGIVLISLLSWGFFGQRLDLP------AIIGMMLICAGVLVINL  103 (110)
T ss_pred             HHHHHHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHHHHhCCCCCHH------HHHHHHHHHHHHHHHhc
Confidence            455666788899999999999999988854 677888999999999999999      99999999999999974

>PRK10650 multidrug efflux system protein MdtI; Provisional

Probab=97.19  E-value=0.0067  Score=45.80  Aligned_cols=65  Identities=15%  Similarity=0.115  Sum_probs=56.6

Q ss_pred             HHHHHHHHHHHHHHhhccccchhhhhcc-hhHHHHHHHHHHHhcccccccccccchhhhHHHHHHHhHhhhh
Q 022016           81 LLGVTINQNTYFEGLYLASSSMASAMGN-LIPAITFVMASIVGLEKIDLGSVRSVAKILGTIFCVGGAISMA  151 (304)
Q Consensus        81 ~~~~~~~~~~~~~al~~~~~~~a~~i~~-~~Pi~~~lla~l~~~er~~~~~~~~~~~~~g~~l~~~G~~li~  151 (304)
                      ..+..+++.+...++++.|.+.+-.+.. .--+.+.+.+++++||++++.      |+.|+.+.+.|++.+-
T Consensus        42 ~~~~~~sf~~Ls~al~~lpvgvAYAvW~GiG~v~~~~ig~~~f~e~~~~~------~~~gi~lIi~GVi~lk  107 (109)
T PRK10650         42 LAAVLAAFSALSQAVKGIDLSVAYALWGGFGIAATLAAGWILFGQRLNRK------GWIGLVLLLAGMVMIK  107 (109)
T ss_pred             HHHHHHHHHHHHHHHhhCchHHHHHHHHHHHHHHHHHHHHHHcCCCCCHH------HHHHHHHHHHHHHHhc
Confidence            4445778889999999999999877775 666788999999999999999      9999999999998764

>KOG2765 consensus Predicted membrane protein [Function unknown]

Probab=96.97  E-value=0.0071  Score=54.74  Aligned_cols=142  Identities=15%  Similarity=0.194  Sum_probs=112.4

Q ss_pred             cchHHHHHHHHHHHHHHHHHHHHHHHHhc---CCChHHHHHHHHHHHHHHHHHHHHhhh--ccccCCCCCHHHHHHHHHH
Q 022016            5 RDYKPAMAMLALQFSYAVVALSTRAALLQ---GMNPRVFVVYRQAIATLFMAPMAYLSS--RKYKSSSMGLRSFSLIFFI   79 (304)
Q Consensus         5 ~~~~g~~~~l~~~~~~~~~~~~~k~~~~~---~~~p~~~~~~R~~~a~~~l~~~~~~~~--~~~~~~~~~~~~~~~~~~~   79 (304)
                      +...|-+++++++++||...++.|.=.++   .+|-..+--+--++..++++|......  +.++..-.+..+....+..
T Consensus       244 ~~llG~llaL~sA~~YavY~vllk~~~~~eg~rvdi~lffGfvGLfnllllwP~l~iL~~~~~e~F~lP~~~q~~~vv~~  323 (416)
T KOG2765|consen  244 RPLLGNLLALLSALLYAVYTVLLKRKIGDEGERVDIQLFFGFVGLFNLLLLWPPLIILDFFGEERFELPSSTQFSLVVFN  323 (416)
T ss_pred             chhHHHHHHHHHHHHHHHHHHHHHhhcccccccccHHHHHHHHHHHHHHHHhHHHHHHHHhccCcccCCCCceeEeeeHh
Confidence            45789999999999999999999886543   266677777777777888886554322  2222122245666677788


Q ss_pred             HHHHHHHHHHHHHHHhhccccchhhhhcchhHHHHHHHHHHHhcccccccccccchhhhHHHHHHHhHhhhhh
Q 022016           80 ALLGVTINQNTYFEGLYLASSSMASAMGNLIPAITFVMASIVGLEKIDLGSVRSVAKILGTIFCVGGAISMAL  152 (304)
Q Consensus        80 g~~~~~~~~~~~~~al~~~~~~~a~~i~~~~Pi~~~lla~l~~~er~~~~~~~~~~~~~g~~l~~~G~~li~~  152 (304)
                      ++++.++...+|..|+-.+++-.+++-++.+-...++.-.++.+..+++.      .++|.+..++|-+++..
T Consensus       324 ~ligtvvSDylW~~a~~lTs~Lv~TlgmSltIPLA~~aD~l~k~~~~S~~------~iiGsi~Ifv~Fv~vn~  390 (416)
T KOG2765|consen  324 NLIGTVVSDYLWAKAVLLTSPLVVTLGMSLTIPLAMFADVLIKGKHPSAL------YIIGSIPIFVGFVIVNI  390 (416)
T ss_pred             hHHHHHHHHHHHHHHHHhccchhheeeeeEeeeHHHHHHHHHcCCCCCHH------HHHHHHHHHHHHhheec
Confidence            99999999999999999999999999998777777788888888889998      99999999999999885

>PF10639 UPF0546: Uncharacterised protein family UPF0546; InterPro: IPR018908 This family of proteins has no known function

Probab=96.97  E-value=0.0037  Score=47.37  Aligned_cols=110  Identities=15%  Similarity=0.083  Sum_probs=78.5

Q ss_pred             HHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHhhhccccCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Q 022016           14 LALQFSYAVVALSTRAALLQGMNPRVFVVYRQAIATLFMAPMAYLSSRKYKSSSMGLRSFSLIFFIALLGVTINQNTYFE   93 (304)
Q Consensus        14 l~~~~~~~~~~~~~k~~~~~~~~p~~~~~~R~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~   93 (304)
                      ++.+++||.+.++.|..... .++..-.. |..--.. .           .     .+++. +. ..+...-.+...|++
T Consensus         2 l~Vg~~WG~Tnpfik~g~~~-~~~~~~~~-~~~~~~~-~-----------L-----l~n~~-y~-ipf~lNq~GSv~f~~   60 (113)
T PF10639_consen    2 LLVGILWGCTNPFIKRGSSG-LEKVKASL-QLLQEIK-F-----------L-----LLNPK-YI-IPFLLNQSGSVLFFL   60 (113)
T ss_pred             eeehHHhcCchHHHHHHHhh-cCCccchH-HHHHHHH-H-----------H-----HHhHH-HH-HHHHHHHHHHHHHHH
Confidence            45689999999999999864 55544431 2111111 1           0     11122 22 233334678889999


Q ss_pred             Hhhccccchhhhhc-chhHHHHHHHHHHHhcccccccccccchhhhHHHHHHHhHhhh
Q 022016           94 GLYLASSSMASAMG-NLIPAITFVMASIVGLEKIDLGSVRSVAKILGTIFCVGGAISM  150 (304)
Q Consensus        94 al~~~~~~~a~~i~-~~~Pi~~~lla~l~~~er~~~~~~~~~~~~~g~~l~~~G~~li  150 (304)
                      .+...+.+.+..+. ++.=++|.+.++++.+|..+++      .++|+.+.+.|+.++
T Consensus        61 ~L~~~dlSlavPi~Nsl~fvfT~l~g~~lge~~~~~~------~~~G~~Li~~Gv~Lc  112 (113)
T PF10639_consen   61 LLGSADLSLAVPIANSLAFVFTALTGWLLGEEVISRR------TWLGMALILAGVALC  112 (113)
T ss_pred             HHhcCCceeeehHHhHHHHHHHHHHHHHhcCcccchh------HHHHHHHHHcCeeee
Confidence            99999999999997 6777899999988888888888      999999999998765

Many members are annotated as potential transmembrane proteins.

>PRK11431 multidrug efflux system protein; Provisional

Probab=96.91  E-value=0.0054  Score=46.03  Aligned_cols=65  Identities=11%  Similarity=0.061  Sum_probs=57.9

Q ss_pred             HHHHHHHHHHHHHHhhccccchhhhhcc-hhHHHHHHHHHHHhcccccccccccchhhhHHHHHHHhHhhhh
Q 022016           81 LLGVTINQNTYFEGLYLASSSMASAMGN-LIPAITFVMASIVGLEKIDLGSVRSVAKILGTIFCVGGAISMA  151 (304)
Q Consensus        81 ~~~~~~~~~~~~~al~~~~~~~a~~i~~-~~Pi~~~lla~l~~~er~~~~~~~~~~~~~g~~l~~~G~~li~  151 (304)
                      +.++..++.+...++++.|.+.+-.+-. .--+.+.+.+++++||++++.      ++.|+.+.+.|++.+-
T Consensus        36 i~~~~~sf~~Ls~al~~ip~gvaYAvW~GiG~v~~~lig~~~f~e~~~~~------~~~gi~lIi~GVv~l~  101 (105)
T PRK11431         36 VTAMIVSMALLAWAMKSLPVGTAYAVWTGIGAVGAAITGIVLLGESASPA------RLLSLALIVAGIIGLK  101 (105)
T ss_pred             HHHHHHHHHHHHHHHhhCCcHhHHHHHHHHHHHHHHHHHHHHhCCCCCHH------HHHHHHHHHHHHHhhh
Confidence            5556788999999999999999877775 777889999999999999999      9999999999999876

>COG2076 EmrE Membrane transporters of cations and cationic drugs [Inorganic ion transport and metabolism]

Probab=96.90  E-value=0.0042  Score=46.33  Aligned_cols=68  Identities=19%  Similarity=0.192  Sum_probs=58.5

Q ss_pred             HHHHHHHHHHHHHHHHhhccccchhhhhcc-hhHHHHHHHHHHHhcccccccccccchhhhHHHHHHHhHhhhhh
Q 022016           79 IALLGVTINQNTYFEGLYLASSSMASAMGN-LIPAITFVMASIVGLEKIDLGSVRSVAKILGTIFCVGGAISMAL  152 (304)
Q Consensus        79 ~g~~~~~~~~~~~~~al~~~~~~~a~~i~~-~~Pi~~~lla~l~~~er~~~~~~~~~~~~~g~~l~~~G~~li~~  152 (304)
                      ..+.++..++.+.-.++++.|.+.+-.+-. .--+.+.+.++++++||.+..      +++|+.+.+.|++.+-.
T Consensus        35 l~~v~~~~sf~~Ls~alk~ipvgvAYAiW~GiG~v~~~l~g~~~f~E~l~~~------~~~gl~LiiaGvi~Lk~  103 (106)
T COG2076          35 LTIVGYGLSFYLLSLALKTIPLGVAYAIWTGIGIVGTALVGVLLFGESLSLI------KLLGLALILAGVIGLKL  103 (106)
T ss_pred             HHHHHHHHHHHHHHHHHhhCchHHHHHHHHHHHHHHHHHHHHHhcCCcCCHH------HHHHHHHHHHHHHHhhh
Confidence            444555788999999999999999877764 666789999999999999999      99999999999998763

>KOG1583 consensus UDP-N-acetylglucosamine transporter [Carbohydrate transport and metabolism]

Probab=96.86  E-value=0.0038  Score=54.18  Aligned_cols=221  Identities=10%  Similarity=0.057  Sum_probs=141.3

Q ss_pred             CCCCHHHHHHHHHHHHHHHHHHHHHHHHHhhcc-ccchhhhhcchhHHHHHHHHHHHhcccccccccccchhhhHHHHHH
Q 022016           66 SSMGLRSFSLIFFIALLGVTINQNTYFEGLYLA-SSSMASAMGNLIPAITFVMASIVGLEKIDLGSVRSVAKILGTIFCV  144 (304)
Q Consensus        66 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~al~~~-~~~~a~~i~~~~Pi~~~lla~l~~~er~~~~~~~~~~~~~g~~l~~  144 (304)
                      ++++.|++....   .. ++..+.+-++++++- +...=.++=+-.++-+++++|++.|.|-+.+      |..+.++.-
T Consensus        60 ~kiplk~Y~i~V---~m-FF~vnv~NN~al~f~I~~PlHiIfRsgsll~nM~~g~il~~k~Ys~~------Qy~Sv~~iT  129 (330)
T KOG1583|consen   60 PKIPLKDYAITV---AM-FFIVNVTNNYALKFNIPMPLHIIFRSGSLLANMILGWILLGKRYSLR------QYSSVLMIT  129 (330)
T ss_pred             CCCchhhhheeh---he-eeeeeeeccceeeecccceEEEEEecCcHHHHHHHHHHhccceeehh------hhhhHHhhh
Confidence            555666654322   22 245677778888765 4444445557889999999999999999999      999999999


Q ss_pred             HhHhhhhhccCCccccccCCccccccccCCCCCchHHHHHHHHHHHHHHHHHHHhHHHHhhcCC-CchhHHHHHHHHHHH
Q 022016          145 GGAISMALLRGPKLLNTEFLPEKSFLFRSSGGENWLLGCLFLFASACCWSLWLILQVPVSASYP-DHLSLSAWMCFLATL  223 (304)
Q Consensus       145 ~G~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~l~a~~~~a~~~~~~k~~~~~~~-~~~~~~~~~~~~~~l  223 (304)
                      +|.++..+.++++... ..+..|+. +...+...+..|+.+...+-+.-|.-.+.+.+.-+++. ++.....|.-+....
T Consensus       130 iGiiIcTl~s~~d~~~-~~~~l~~~-~~~~~~~~w~iGi~lL~~al~~sa~mgiyqE~~Y~kyGKh~~EalFytH~LsLP  207 (330)
T KOG1583|consen  130 IGIIICTLFSSKDGRS-KLSGLDSG-SAQSDFFWWLIGIALLVFALLLSAYMGIYQETTYQKYGKHWKEALFYTHFLSLP  207 (330)
T ss_pred             hhheeEEeecCcchhh-hhcccccC-cccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHhccc
Confidence            9999999876655432 11111111 01134456789998888887777777777777666653 688888888777666


Q ss_pred             HHHHHHH-hc-------CCC---cccccccCcchHHHHHHHHhhccchheeee---eeeecccCceeeeeccchHHHHHH
Q 022016          224 QSATFAI-FT-------EPD---PEAWNLHSSLEIFCCFFSGAIGSGVSFCVQ---AWCISKRGPLFSAMFNPLCTVIVT  289 (304)
Q Consensus       224 ~~~~~~~-~~-------~~~---~~~~~~~~~~~~~~~~~~g~~~~~~~~~l~---~~~~~~~~a~~~s~~~~l~pv~a~  289 (304)
                      .++...- +.       ..+   .+.....-|..|..++.-.+    ..|.|-   +.--...++-.++.+..+.-.+++
T Consensus       208 ~Flf~~~div~~~~~~~~se~~~~p~~g~~vP~~~~yLl~n~L----~Qy~CikgVy~L~te~~sLTVTlvltlRKFvSL  283 (330)
T KOG1583|consen  208 LFLFMGDDIVSHWRLAFKSESYLIPLLGFKVPSMWVYLLFNVL----TQYFCIKGVYILTTETSSLTVTLVLTLRKFVSL  283 (330)
T ss_pred             hHHHhcchHHHHHHHHhcCcceeccccCccccHHHHHHHHHHH----HHHHHHHhhhhhhceecceEEEEeeeHHHHHHH
Confidence            5543321 00       000   00011112345555544333    222221   223345566778999999999999


Q ss_pred             HHHHHHhCCcccc
Q 022016          290 ILAALLLHEEIYT  302 (304)
Q Consensus       290 l~~~~~~~e~~~~  302 (304)
                      +++.+.|++++++
T Consensus       284 l~SiiyF~Npft~  296 (330)
T KOG1583|consen  284 LFSIIYFENPFTP  296 (330)
T ss_pred             hheeeEecCCCCH
Confidence            9999999998875

>KOG4510 consensus Permease of the drug/metabolite transporter (DMT) superfamily [General function prediction only]

Probab=96.78  E-value=0.00097  Score=57.53  Aligned_cols=137  Identities=15%  Similarity=0.034  Sum_probs=109.7

Q ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHhhhccccCCCCCHHHHHHHHHHHHHHHH
Q 022016            6 DYKPAMAMLALQFSYAVVALSTRAALLQGMNPRVFVVYRQAIATLFMAPMAYLSSRKYKSSSMGLRSFSLIFFIALLGVT   85 (304)
Q Consensus         6 ~~~g~~~~l~~~~~~~~~~~~~k~~~~~~~~p~~~~~~R~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~   85 (304)
                      ..++..+.+..+..-+..++..|+.-++ .+....+.+-.+++.+.-++.+..-.+... | -.+||+..+..+|+++ +
T Consensus       189 ~~~gt~aai~s~lf~asvyIilR~iGk~-~h~~msvsyf~~i~lV~s~I~~~~ig~~~l-P-~cgkdr~l~~~lGvfg-f  264 (346)
T KOG4510|consen  189 DIPGTVAAISSVLFGASVYIILRYIGKN-AHAIMSVSYFSLITLVVSLIGCASIGAVQL-P-HCGKDRWLFVNLGVFG-F  264 (346)
T ss_pred             cCCchHHHHHhHhhhhhHHHHHHHhhcc-ccEEEEehHHHHHHHHHHHHHHhhccceec-C-ccccceEEEEEehhhh-h
Confidence            3456777888888888889999998654 676666666666666655554433333333 3 3678888888999999 8


Q ss_pred             HHHHHHHHHhhccccchhhhhcchhHHHHHHHHHHHhcccccccccccchhhhHHHHHHHhHhhhhh
Q 022016           86 INQNTYFEGLYLASSSMASAMGNLIPAITFVMASIVGLEKIDLGSVRSVAKILGTIFCVGGAISMAL  152 (304)
Q Consensus        86 ~~~~~~~~al~~~~~~~a~~i~~~~Pi~~~lla~l~~~er~~~~~~~~~~~~~g~~l~~~G~~li~~  152 (304)
                      .++.+.-.|++.=-++..+++-++.-++..+.-.++++|-++++      .+.|+++.+...+....
T Consensus       265 igQIllTm~lQiErAGpvaim~~~dvvfAf~wqv~ff~~~Pt~w------s~~Ga~~vvsS~v~~a~  325 (346)
T KOG4510|consen  265 IGQILLTMGLQIERAGPVAIMTYTDVVFAFFWQVLFFGHWPTIW------SWVGAVMVVSSTVWVAL  325 (346)
T ss_pred             HHHHHHHHHhhhhccCCeehhhHHHHHHHHHHHHHHhcCCChHH------HhhceeeeehhHHHHHH
Confidence            99999999999999999999999999999999999999999999      99999988888777774

>PRK15051 4-amino-4-deoxy-L-arabinose-phosphoundecaprenol flippase subunit ArnE; Provisional

Probab=96.69  E-value=0.00048  Score=52.42  Aligned_cols=51  Identities=18%  Similarity=0.089  Sum_probs=46.1

Q ss_pred             HHhhccchheeeeeeeecccCceeeeeccchHHHHHHHHHHHHhCCccccC
Q 022016          253 SGAIGSGVSFCVQAWCISKRGPLFSAMFNPLCTVIVTILAALLLHEEIYTG  303 (304)
Q Consensus       253 ~g~~~~~~~~~l~~~~~~~~~a~~~s~~~~l~pv~a~l~~~~~~~e~~~~~  303 (304)
                      .++++.++++.++.+++|+.+.+++.++.++.++.+.+.+++++||++|..
T Consensus        42 ~~~~~~~l~~~~~~~al~~iplg~Ay~~~~l~~v~~~~~~~l~f~E~ls~~   92 (111)
T PRK15051         42 LALACLGLAMVLWLLVLQNVPVGIAYPMLSLNFVWVTLAAVKLWHEPVSPR   92 (111)
T ss_pred             HHHHHHHHHHHHHHHHHhhCChHHHHHHHHHHHHHHHHHHHHHhCCCCCHH
Confidence            444667788999999999999999999999999999999999999999864

>PF00893 Multi_Drug_Res: Small Multidrug Resistance protein; InterPro: IPR000390 Members of this family which have been characterised, belong to the small multidrug resistance (Smr) protein family and are integral membrane proteins

Probab=96.60  E-value=0.0067  Score=44.52  Aligned_cols=57  Identities=21%  Similarity=0.057  Sum_probs=35.2

Q ss_pred             HHHHHHHHHHHHHHHhhccccchhhhhc-chhHHHHHHHHHHHhcccccccccccchhhhHHHH
Q 022016           80 ALLGVTINQNTYFEGLYLASSSMASAMG-NLIPAITFVMASIVGLEKIDLGSVRSVAKILGTIF  142 (304)
Q Consensus        80 g~~~~~~~~~~~~~al~~~~~~~a~~i~-~~~Pi~~~lla~l~~~er~~~~~~~~~~~~~g~~l  142 (304)
                      .+..++.+..++..++++.|.+.+-.+. .+..+.+.+.+.+++||++++.      |+.|+.+
T Consensus        35 ~~~~~~~s~~~l~~al~~lp~~vaYavw~g~g~v~~~~~~~~~f~E~~s~~------~~~gi~l   92 (93)
T PF00893_consen   35 AVVGYGLSFYFLSLALKKLPLSVAYAVWTGLGIVGVTLVGVFFFGESLSLS------KWLGIGL   92 (93)
T ss_dssp             HHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHH--------------HHHHHH
T ss_pred             HHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHhCCCCCHH------HHhheee
Confidence            4445688899999999999999997665 5888999999999999999999      9999875

They confer resistance to a wide range of toxic compounds by removing them for the cells. The efflux is coupled to an influx of protons. An example is Escherichia coli mvrC P23895 from SWISSPROT which prevents the incorporation of methyl viologen into cells [] and is involved in ethidium bromide efflux [].; GO: 0016021 integral to membrane; PDB: 2I68_A.

>PF07857 DUF1632: CEO family (DUF1632); InterPro: IPR012435 These sequences are found in hypothetical eukaryotic proteins of unknown function

Probab=96.49  E-value=0.058  Score=47.06  Aligned_cols=187  Identities=6%  Similarity=-0.037  Sum_probs=117.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHhhhccccCCCCCHHHHHHHHHHHHHHHHHHH
Q 022016            9 PAMAMLALQFSYAVVALSTRAALLQGMNPRVFVVYRQAIATLFMAPMAYLSSRKYKSSSMGLRSFSLIFFIALLGVTINQ   88 (304)
Q Consensus         9 g~~~~l~~~~~~~~~~~~~k~~~~~~~~p~~~~~~R~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~   88 (304)
                      |+++++.+.+++|.+++-.|..- . -|++.+.++-+....+.-+......+.    ++    -..+.++-|.+ .+.++
T Consensus         1 G~~a~~va~~~fGs~~vPvK~~~-~-gDg~~fQw~~~~~i~~~g~~v~~~~~~----p~----f~p~amlgG~l-W~~gN   69 (254)
T PF07857_consen    1 GYIACIVAVLFFGSNFVPVKKFD-T-GDGFFFQWVMCSGIFLVGLVVNLILGF----PP----FYPWAMLGGAL-WATGN   69 (254)
T ss_pred             CchhHHHHHHHhcccceeeEecc-C-CCcHHHHHHHHHHHHHHHHHHHHhcCC----Cc----ceeHHHhhhhh-hhcCc
Confidence            46789999999999999999864 3 588887777776666655554443222    21    13444455566 48999


Q ss_pred             HHHHHHhhccccchhhhhcchhHHHHH-HHHHH-HhcccccccccccchhhhHHHHHHHhHhhhhhccCCccc-c--ccC
Q 022016           89 NTYFEGLYLASSSMASAMGNLIPAITF-VMASI-VGLEKIDLGSVRSVAKILGTIFCVGGAISMALLRGPKLL-N--TEF  163 (304)
Q Consensus        89 ~~~~~al~~~~~~~a~~i~~~~Pi~~~-lla~l-~~~er~~~~~~~~~~~~~g~~l~~~G~~li~~~~~~~~~-~--~~~  163 (304)
                      .+-.-.++..+.+.+.++-++.-..+- ..+.+ +++++.+.. -..+...+|+++.++|..+...-+.++-. .  .++
T Consensus        70 ~~~vpii~~iGLglg~liW~s~n~l~Gw~~grfGlFg~~~~~~-~~~~Ln~~G~~l~~~~~~~f~fik~~~~~~~~~~~~  148 (254)
T PF07857_consen   70 ILVVPIIKTIGLGLGMLIWGSVNCLTGWASGRFGLFGLDPQVP-SSPWLNYIGVALVLVSGIIFSFIKSEEKEPKKSSEE  148 (254)
T ss_pred             eeehhHhhhhhhHHHHHHHHHHHHHHHHHHhhceecccccccc-chhHHHHHHHHHHHHHHHheeeecCCCCCccccccc
Confidence            999999999999999988887554443 22222 343333221 12355888999999998887653222210 0  000


Q ss_pred             -----C--c---cccccccC-------CCCCchHHHHHHHHHHHHHHHHHHHhHHHHhhcC
Q 022016          164 -----L--P---EKSFLFRS-------SGGENWLLGCLFLFASACCWSLWLILQVPVSASY  207 (304)
Q Consensus       164 -----~--~---~~~~~~~~-------~~~~~~~~G~~~~l~a~~~~a~~~~~~k~~~~~~  207 (304)
                           +  +   ++++..++       ++.++...|+.+++++++.|+...+=.....++.
T Consensus       149 ~~~~~~~~~~~~~~~~~~~~~S~vd~l~~~~~RivG~~LAv~aGvlyGs~fvPv~Yi~~~~  209 (254)
T PF07857_consen  149 TPLSIEDVIEIEDDSENSEDSSWVDELSPRKKRIVGIILAVFAGVLYGSNFVPVIYIQDHP  209 (254)
T ss_pred             cccccccccccccccccccccccccccccccchhHhHHHHHHHHHHHhcccchHHHHHhCc
Confidence                 0  0   00000001       1122578999999999999999887777765553

The region concerned is approximately 280 residues long.

>COG3238 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=96.13  E-value=0.14  Score=40.86  Aligned_cols=137  Identities=10%  Similarity=0.011  Sum_probs=85.9

Q ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHhhhccccCCCCCHHHHHHHHHHHHHHHH
Q 022016            6 DYKPAMAMLALQFSYAVVALSTRAALLQGMNPRVFVVYRQAIATLFMAPMAYLSSRKYKSSSMGLRSFSLIFFIALLGVT   85 (304)
Q Consensus         6 ~~~g~~~~l~~~~~~~~~~~~~k~~~~~~~~p~~~~~~R~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~   85 (304)
                      .....+..+.+..+-.....++-...+..=+|..-.+..+.++.+.+..+....++++. .+..++.-+|.+.-|.+| .
T Consensus         3 ~~l~ll~~i~aG~~l~~Q~~iN~qL~~~~~spl~As~isf~vGt~~L~~l~l~~~~~~~-~a~~~~~pwW~~~GG~lG-a   80 (150)
T COG3238           3 MYLYLLFAILAGALLPLQAAINGRLARYLGSPLLASLISFLVGTVLLLILLLIKQGHPG-LAAVASAPWWAWIGGLLG-A   80 (150)
T ss_pred             cHHHHHHHHHHhhhhhhHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHHHHHhcCCCc-hhhccCCchHHHHccchh-h
Confidence            34566777777777777777777766542349999999999999888887766433333 333344455666777776 5


Q ss_pred             HHHHHHHHHhhccccchhhhhcchh-HHHHHHHHHHH-h---cccccccccccchhhhHHHHHHHhHhhh
Q 022016           86 INQNTYFEGLYLASSSMASAMGNLI-PAITFVMASIV-G---LEKIDLGSVRSVAKILGTIFCVGGAISM  150 (304)
Q Consensus        86 ~~~~~~~~al~~~~~~~a~~i~~~~-Pi~~~lla~l~-~---~er~~~~~~~~~~~~~g~~l~~~G~~li  150 (304)
                      ..-........+.+++....+.-.. -+...++..+= +   +.++++      .++.|+++.+.|++++
T Consensus        81 ~~vt~s~~l~p~lGa~~t~~l~i~gQli~glliD~fG~~g~~~~~~~~------~r~lgi~L~l~gil~~  144 (150)
T COG3238          81 IFVTSSILLAPRLGAATTIALVIAGQLIMGLLIDHFGWFGVPKRPLNL------PRILGILLVLAGILLA  144 (150)
T ss_pred             hhhhhhHHhccchhHHHHHHHHHHHHHHHHHHHHhhcccCCCcCCCCH------HHHHHHHHHHHHHHHh
Confidence            5555555566666666554444333 33333433331 2   234444      4999999999994443

>KOG1581 consensus UDP-galactose transporter related protein [Carbohydrate transport and metabolism]

Probab=95.78  E-value=0.12  Score=45.72  Aligned_cols=141  Identities=9%  Similarity=0.046  Sum_probs=110.7

Q ss_pred             cchHHHHHHHHHHHHHHHHHHHHHHHHhc-CCChHHHHHHHHHHHHHHHHHHHHhhhcccc---CCCCCHHHHHHHHHHH
Q 022016            5 RDYKPAMAMLALQFSYAVVALSTRAALLQ-GMNPRVFVVYRQAIATLFMAPMAYLSSRKYK---SSSMGLRSFSLIFFIA   80 (304)
Q Consensus         5 ~~~~g~~~~l~~~~~~~~~~~~~k~~~~~-~~~p~~~~~~R~~~a~~~l~~~~~~~~~~~~---~~~~~~~~~~~~~~~g   80 (304)
                      +...|+.++..--..=|+.....+...++ ++++.++.+.-++..++.........+....   .-+.+++.++-.++.+
T Consensus       169 ns~~G~~Ll~~~L~fDgfTn~tQd~lf~~~k~s~~~mM~~vNLf~~i~~~~~li~qg~~~~av~F~~~hp~~~~Di~l~s  248 (327)
T KOG1581|consen  169 NSPIGILLLFGYLLFDGFTNATQDSLFKKYKVSSLHMMFGVNLFSAILNGTYLILQGHLLPAVSFIKEHPDVAFDILLYS  248 (327)
T ss_pred             CchHhHHHHHHHHHHHhhHHhHHHHHhccCCccHhHHHHHHHHHHHHHHHHhhhcCCCCchHHHHHHcChhHHHHHHHHH
Confidence            34567776666665556666666655543 4999999999999999887776443222111   0234677788888889


Q ss_pred             HHHHHHHHHHHHHHhhccccchhhhhcchhHHHHHHHHHHHhcccccccccccchhhhHHHHHHHhHhhhhh
Q 022016           81 LLGVTINQNTYFEGLYLASSSMASAMGNLIPAITFVMASIVGLEKIDLGSVRSVAKILGTIFCVGGAISMAL  152 (304)
Q Consensus        81 ~~~~~~~~~~~~~al~~~~~~~a~~i~~~~Pi~~~lla~l~~~er~~~~~~~~~~~~~g~~l~~~G~~li~~  152 (304)
                      .++ .+++.+.++-++.-++-.-+.+..+=-++.+.++.+.++.++++.      |+.|+.+.+.|..+=.+
T Consensus       249 ~~g-avGQ~FI~~TI~~FGslt~t~I~ttRk~~si~lS~i~f~h~~s~~------q~~g~~iVFg~i~l~~~  313 (327)
T KOG1581|consen  249 TCG-AVGQLFIFYTIERFGSLTFTTIMTTRKMVSIMLSCIVFGHPLSSE------QWLGVLIVFGGIFLEIL  313 (327)
T ss_pred             Hhh-hhhhheehhhHhhcccHHHHHHHHHHHHHHHHHHHHHhCCccchh------hccCeeeehHHHHHHHH
Confidence            998 899999999999999998999999999999999999999999999      99999999999887764

>TIGR00803 nst UDP-galactose transporter

Probab=95.64  E-value=0.053  Score=46.36  Aligned_cols=59  Identities=14%  Similarity=-0.045  Sum_probs=54.4

Q ss_pred             HHHHHHHHHHhhccccchhhhhcchhHHHHHHHHHHHhcccccccccccchhhhHHHHHHHhHhh
Q 022016           85 TINQNTYFEGLYLASSSMASAMGNLIPAITFVMASIVGLEKIDLGSVRSVAKILGTIFCVGGAIS  149 (304)
Q Consensus        85 ~~~~~~~~~al~~~~~~~a~~i~~~~Pi~~~lla~l~~~er~~~~~~~~~~~~~g~~l~~~G~~l  149 (304)
                      ..+..+....+++.++..-+....+.++++.+++.++++|+++..      ++.|+.+.+.|+.+
T Consensus       163 a~~~~~v~~vlk~~~~~~~~~~~~~~~~~s~lls~~~f~~~ls~~------~~~g~~lV~~~~~l  221 (222)
T TIGR00803       163 VGGGLCIGGVVRYADNTTKSFVTALSIILSTLASVRLFDAKISST------FYLGAILVFLATFL  221 (222)
T ss_pred             HhcCceeeehhHHhHHHHHHHHHHHHHHHHHHHHHHHhcCCccHH------HHHHHHHHHeeeEe
Confidence            667788999999999999999999999999999999999999999      99999999988653

NSTs generally appear to function by antiport mechanisms, exchanging a nucleotide-sugar for a nucleotide. Thus, CMP-sialic acid is exchanged for CMP; GDP-mannose is preferentially exchanged for GMP, and UDP-galactose and UDP-N-acetylglucosamine are exchanged for UMP (or possibly UDP). Other nucleotide sugars (e.g., GDP-fucose, UDP-xylose, UDP-glucose, UDP-N-acetylgalactosamine, etc.) may also be transported in exchange for various nucleotides, but their transporters have not been molecularly characterized. Each compound appears to be translocated by its own transport protein. Transport allows the compound, synthesized in the cytoplasm, to be exported to the lumen of the Golgi apparatus or the endoplasmic reticulum where it is used for the synthesis of glycoproteins and glycolipids.

>KOG1580 consensus UDP-galactose transporter related protein [Carbohydrate transport and metabolism]

Probab=94.82  E-value=0.33  Score=41.50  Aligned_cols=137  Identities=9%  Similarity=0.060  Sum_probs=95.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhc-CCChHHHHHHHHHHHHHHHHHHHHhhhcccc---CCCCCHHHHHHHHHHHHHHH
Q 022016            9 PAMAMLALQFSYAVVALSTRAALLQ-GMNPRVFVVYRQAIATLFMAPMAYLSSRKYK---SSSMGLRSFSLIFFIALLGV   84 (304)
Q Consensus         9 g~~~~l~~~~~~~~~~~~~k~~~~~-~~~p~~~~~~R~~~a~~~l~~~~~~~~~~~~---~~~~~~~~~~~~~~~g~~~~   84 (304)
                      |-++.++.-.+=|.........-.+ .-+..++.+.-++.+.+.+-.-..+.+.-..   ....++..+..+...++.+ 
T Consensus       173 GElLL~lSL~mDGlTg~~Qdrira~yq~~g~~MM~~~NlwStL~Lg~g~lfTGElweF~yF~~RhP~~~~~l~l~ai~s-  251 (337)
T KOG1580|consen  173 GELLLILSLAMDGLTGSIQDRIRASYQRTGTSMMFYTNLWSTLYLGAGLLFTGELWEFFYFVQRHPYVFWDLTLLAIAS-  251 (337)
T ss_pred             HHHHHHHHHHhcccchhHHHHHHHhhccCchhhHHHHHHHHHHHhhhhheehhhHHHHHHHHHhccHHHHHHHHHHHHH-
Confidence            3445555555555555554443322 1345566666666666655432222111000   0111345677777888887 


Q ss_pred             HHHHHHHHHHhhccccchhhhhcchhHHHHHHHHHHHhcccccccccccchhhhHHHHHHHhHhhhhh
Q 022016           85 TINQNTYFEGLYLASSSMASAMGNLIPAITFVMASIVGLEKIDLGSVRSVAKILGTIFCVGGAISMAL  152 (304)
Q Consensus        85 ~~~~~~~~~al~~~~~~~a~~i~~~~Pi~~~lla~l~~~er~~~~~~~~~~~~~g~~l~~~G~~li~~  152 (304)
                      ++++.+.|.-+.+-+|-.-+++..+--.|+++.+.++++.+++.+      ||+|.++.+.|...=..
T Consensus       252 ~LGQ~fIF~tv~~FgPLtCSivTTTRKfFTil~SVllf~npls~r------QwlgtvlVF~aL~~D~~  313 (337)
T KOG1580|consen  252 CLGQWFIFKTVEEFGPLTCSIVTTTRKFFTILISVLLFNNPLSGR------QWLGTVLVFSALTADVV  313 (337)
T ss_pred             HhhhHHHHHHHHHhCCeeEEEEeehHHHHHHHHHHHHhcCcCcHH------HHHHHHHHHHHhhhHhh
Confidence            999999999999999999999999999999999999999999999      99999999999877654

>KOG1444 consensus Nucleotide-sugar transporter VRG4/SQV-7 [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]

Probab=93.61  E-value=1  Score=40.25  Aligned_cols=139  Identities=10%  Similarity=0.127  Sum_probs=101.8

Q ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHHhc-CCChHHHHHHHHHHHHHHHHHHHHhhhccc-----cCCCCCHHHHHHHHHH
Q 022016            6 DYKPAMAMLALQFSYAVVALSTRAALLQ-GMNPRVFVVYRQAIATLFMAPMAYLSSRKY-----KSSSMGLRSFSLIFFI   79 (304)
Q Consensus         6 ~~~g~~~~l~~~~~~~~~~~~~k~~~~~-~~~p~~~~~~R~~~a~~~l~~~~~~~~~~~-----~~~~~~~~~~~~~~~~   79 (304)
                      +..|+..+....+.-+...+..|+..+. +.+-..++++..+.+.+.+.......+...     ...-.+...+....+.
T Consensus       155 ~~~gY~w~~~n~~~~a~~~v~~kk~vd~~~l~~~~lv~yNnl~~L~~l~~~~~~~ge~~~l~~~~~~~~~~~~~~~~~lS  234 (314)
T KOG1444|consen  155 NLRGYSWALANCLTTAAFVVYVKKSVDSANLNKFGLVFYNNLLSLPPLLILSFITGELDALSLNFDNWSDSSVLVVMLLS  234 (314)
T ss_pred             cchhHHHHHHHHHHHHHHHHHHHHhhccccccceeEEeehhHHHHHHHHHHHHHhcchHHHHhhcccccchhHHHHHHHH
Confidence            3457788888888888888888888764 378888999999999988877765544311     1011123445566677


Q ss_pred             HHHHHHHHHHHHHHHhhccccchhhhhcchhHHHHHHHHHH-HhcccccccccccchhhhHHHHHHHhHhhhhh
Q 022016           80 ALLGVTINQNTYFEGLYLASSSMASAMGNLIPAITFVMASI-VGLEKIDLGSVRSVAKILGTIFCVGGAISMAL  152 (304)
Q Consensus        80 g~~~~~~~~~~~~~al~~~~~~~a~~i~~~~Pi~~~lla~l-~~~er~~~~~~~~~~~~~g~~l~~~G~~li~~  152 (304)
                      ++++ ..-+.+.+...+..++..-++.. +--.+..-++.+ +.++++++.      ...|+.+++.|.++-..
T Consensus       235 cv~g-f~isy~s~~ct~~~SAtT~tivG-~~n~l~t~l~~ll~~d~~~~~~------n~~gll~~~~ggv~Y~~  300 (314)
T KOG1444|consen  235 CVMG-FGISYTSFLCTRVNSATTTTIVG-AKNKLLTYLGGLLFGDKPFTFL------NVIGLLVGFFGGVLYSY  300 (314)
T ss_pred             HHHH-HHHHHHHHHHHhhccccceeehh-hhhhHHHHHHHHhcCCceechh------hhHHHHHHhhhhhHHhh
Confidence            7777 56677788899999999888888 555555555555 477888998      99999999999998874

>PF05653 Mg_trans_NIPA: Magnesium transporter NIPA; InterPro: IPR008521 This family consists of several eukaryotic proteins of unknown function

Probab=92.42  E-value=0.11  Score=46.70  Aligned_cols=102  Identities=16%  Similarity=0.142  Sum_probs=71.0

Q ss_pred             CchHHHHHHHHHHHHHHHHHHHhHHHHhhcCCCchhHHHHHHHHHHHHHHHHHHhcCCCcccccccCcchHHHHHHHHhh
Q 022016          177 ENWLLGCLFLFASACCWSLWLILQVPVSASYPDHLSLSAWMCFLATLQSATFAIFTEPDPEAWNLHSSLEIFCCFFSGAI  256 (304)
Q Consensus       177 ~~~~~G~~~~l~a~~~~a~~~~~~k~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~  256 (304)
                      .++.+|..+++.++++.+....++|+...+.+ ....-                  + .....+......|+.    |..
T Consensus         3 ~~~~iGv~lav~ss~~~~~g~~lqk~~~~r~~-~~~~~------------------~-~~~~~~~l~~~~W~~----G~~   58 (300)
T PF05653_consen    3 TDFYIGVLLAVVSSIFIAVGFNLQKKSHLRLP-RGSLR------------------A-GSGGRSYLRRPLWWI----GLL   58 (300)
T ss_pred             chhHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-ccccc------------------c-cchhhHHHhhHHHHH----HHH
Confidence            45789999999999999999999999866653 10000                  0 000000000012332    222


Q ss_pred             ccchheeeeeeeecccCceeeeeccchHHHHHHHHHHHHhCCcccc
Q 022016          257 GSGVSFCVQAWCISKRGPLFSAMFNPLCTVIVTILAALLLHEEIYT  302 (304)
Q Consensus       257 ~~~~~~~l~~~~~~~~~a~~~s~~~~l~pv~a~l~~~~~~~e~~~~  302 (304)
                      ...++..+...++...+++.++++..+..++..+++..+++|+++.
T Consensus        59 ~~~~g~~~~~~Al~~ap~slv~Plg~~~lv~~~~~a~~~l~e~~~~  104 (300)
T PF05653_consen   59 LMVLGEILNFVALGFAPASLVAPLGALSLVFNAVLARFFLGEKLTR  104 (300)
T ss_pred             HHhcchHHHHHHHHhhhHHHHHHHHhhhhhhHHHHhHHHhcccchH
Confidence            3345556677888999999999999999999999999999999875

>PF04142 Nuc_sug_transp: Nucleotide-sugar transporter; InterPro: IPR007271 This family of membrane proteins transport nucleotide sugars from the cytoplasm into golgi vesicles

Probab=92.41  E-value=3.2  Score=36.13  Aligned_cols=129  Identities=16%  Similarity=0.049  Sum_probs=83.2

Q ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHHhcC-CChHHHHHHHHHHHHHHHHHHHHhhhccccCCCC-CHHHHHHHHHHHHHH
Q 022016            6 DYKPAMAMLALQFSYAVVALSTRAALLQG-MNPRVFVVYRQAIATLFMAPMAYLSSRKYKSSSM-GLRSFSLIFFIALLG   83 (304)
Q Consensus         6 ~~~g~~~~l~~~~~~~~~~~~~k~~~~~~-~~p~~~~~~R~~~a~~~l~~~~~~~~~~~~~~~~-~~~~~~~~~~~g~~~   83 (304)
                      ...|+.+++.++++=|...+.....++++ .+.......=+..+.++.++...+.+..+. .+. -.+.+-.....-++.
T Consensus       112 ~~~G~~~vl~~~~~S~~agVy~E~~lK~~~~s~~~~N~qL~~~gi~~~~~~~~~~~~~~~-~~~g~f~G~~~~~~~~i~~  190 (244)
T PF04142_consen  112 PLLGLLAVLAAAFLSGFAGVYFEKLLKRSNVSLWIQNMQLYLFGILFNLLALLLSDGSAI-SESGFFHGYSWWVWIVIFL  190 (244)
T ss_pred             hHhHHHHHHHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHHHHHhccccccc-ccCCchhhcchHHHHHHHH
Confidence            45788999999999999999998888764 344444444444455554444333322111 100 011121222223333


Q ss_pred             HHHHHHHHHHHhhccccchhhhhcchhHHHHHHHHHHHhcccccccccccchhhhHHH
Q 022016           84 VTINQNTYFEGLYLASSSMASAMGNLIPAITFVMASIVGLEKIDLGSVRSVAKILGTI  141 (304)
Q Consensus        84 ~~~~~~~~~~al~~~~~~~a~~i~~~~Pi~~~lla~l~~~er~~~~~~~~~~~~~g~~  141 (304)
                      ...+-.+.-.-++|.+.-.=..-....-+.+.++++.+++.+++..      ..+|..
T Consensus       191 ~a~gGllva~v~KyadnI~K~fa~a~siv~t~~~s~~lf~~~~s~~------f~lg~~  242 (244)
T PF04142_consen  191 QAIGGLLVAFVLKYADNIVKGFATAVSIVLTAVLSVLLFGFPPSLS------FLLGAA  242 (244)
T ss_pred             HHHhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhCCCCchH------Hhhhee
Confidence            3566667777889998887788888888999999999999999986      666543

P78382 from SWISSPROT transports CMP-sialic acid, P78381 from SWISSPROT transports UDP-galactose and Q9Y2D2 from SWISSPROT transports UDP-GlcNAc. This family has some but not complete overlap with the UDP-galactose transporter family IPR004689 from INTERPRO.; GO: 0005351 sugar:hydrogen symporter activity, 0008643 carbohydrate transport, 0000139 Golgi membrane, 0016021 integral to membrane

>PF04657 DUF606: Protein of unknown function, DUF606; InterPro: IPR006750 This family contains uncharacterised bacterial proteins

Probab=92.17  E-value=0.17  Score=40.00  Aligned_cols=108  Identities=8%  Similarity=0.024  Sum_probs=76.1

Q ss_pred             HHHHHHHHHHHHHHHHhHHHHhhcCCCchhHHHHHHHHHHHHHHHHHHhcCCCcccccccCcchHHHHHHHHhhccchhe
Q 022016          183 CLFLFASACCWSLWLILQVPVSASYPDHLSLSAWMCFLATLQSATFAIFTEPDPEAWNLHSSLEIFCCFFSGAIGSGVSF  262 (304)
Q Consensus       183 ~~~~l~a~~~~a~~~~~~k~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~  262 (304)
                      .++++.++.+-++...++.++.++..+|...+.+.+..|.+.+..+..+.++.  +.+...+..|+... .|+ ....-.
T Consensus         3 ~lla~~aG~~i~~q~~~N~~L~~~~gs~~~as~i~~~~G~i~~~i~~~~~~~~--~~~~~~~~p~w~~l-GG~-lG~~~V   78 (138)
T PF04657_consen    3 ILLALLAGALIALQAAFNGQLGKALGSPLVASFISFGVGFILLLIILLITGRP--SLASLSSVPWWAYL-GGL-LGVFFV   78 (138)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHHhccc--ccchhccCChHHhc-cHH-HHHHHH
Confidence            56788999999999999999988875699999999999999998888766643  22211222333322 333 334445


Q ss_pred             eeeeeeecccCceeee-eccchHHHHHHHHHHH
Q 022016          263 CVQAWCISKRGPLFSA-MFNPLCTVIVTILAAL  294 (304)
Q Consensus       263 ~l~~~~~~~~~a~~~s-~~~~l~pv~a~l~~~~  294 (304)
                      .+..+..+++|++... ....-+-+.++++|.+
T Consensus        79 ~~~~~~vp~lG~~~~~~l~~~GQl~~sl~iD~f  111 (138)
T PF04657_consen   79 LSNIILVPRLGAALTTILIVAGQLIASLLIDHF  111 (138)
T ss_pred             HHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHc
Confidence            6677888999987754 4455677778888875

>PF06379 RhaT: L-rhamnose-proton symport protein (RhaT); InterPro: IPR004673 These proteins are members of the L-Rhamnose Symporter (RhaT) family

Probab=91.41  E-value=7.4  Score=35.40  Aligned_cols=277  Identities=12%  Similarity=0.072  Sum_probs=148.2

Q ss_pred             cchHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHhhh--ccc--cCCCCCHHHHHHHHHHH
Q 022016            5 RDYKPAMAMLALQFSYAVVALSTRAALLQGMNPRVFVVYRQAIATLFMAPMAYLSS--RKY--KSSSMGLRSFSLIFFIA   80 (304)
Q Consensus         5 ~~~~g~~~~l~~~~~~~~~~~~~k~~~~~~~~p~~~~~~R~~~a~~~l~~~~~~~~--~~~--~~~~~~~~~~~~~~~~g   80 (304)
                      +-..|++...+++++-|..++-.|...+  .+- |-...-..+-+-+..|+..-.-  +..  .....+...+....+.|
T Consensus         4 ~ii~Gii~h~iGg~~~~sfy~P~kkvk~--WsW-Es~Wlv~gi~swli~P~~~a~l~ip~~~~i~~~~~~~~l~~~~l~G   80 (344)
T PF06379_consen    4 AIILGIIFHAIGGFASGSFYVPFKKVKG--WSW-ESYWLVQGIFSWLIVPWLWALLAIPDFFSIYSATPASTLFWTFLFG   80 (344)
T ss_pred             hHHHHHHHHHHHHHHhhhhccchhhcCC--ccH-HHHHHHHHHHHHHHHHHHHHHHhCCcHHHHHHhCChhHHHHHHHHH
Confidence            3567899999999999999999998642  332 2222223333333444432211  100  01233456677778888


Q ss_pred             HHHHHHHHHHHHHHhhccccchhhhhc-chhHHHHHHHHHHHhccc---ccccccccchhhhHHHHHHHhHhhhhhccCC
Q 022016           81 LLGVTINQNTYFEGLYLASSSMASAMG-NLIPAITFVMASIVGLEK---IDLGSVRSVAKILGTIFCVGGAISMALLRGP  156 (304)
Q Consensus        81 ~~~~~~~~~~~~~al~~~~~~~a~~i~-~~~Pi~~~lla~l~~~er---~~~~~~~~~~~~~g~~l~~~G~~li~~~~~~  156 (304)
                      ++- +++...|=.++||++.+...-+. .++-.+-.++--++.++-   ++.  .-+...++|++++++|++++...+..
T Consensus        81 ~lW-GIGgltfGl~mryLGvSLG~sI~lGl~~~~GTlippi~~g~~~~l~~~--~~g~~vL~Gv~v~LiGIai~g~AG~~  157 (344)
T PF06379_consen   81 VLW-GIGGLTFGLAMRYLGVSLGQSIALGLCAVFGTLIPPIFQGTFDELLAT--PSGQIVLLGVAVCLIGIAICGKAGSM  157 (344)
T ss_pred             HHH-hcchhhHhHHHHHHhHHHHHHHHHHHHHHHhhchHHHHcCcccccccC--CCchhhhhHHHHHHHHHHHHhHHHHh
Confidence            886 99999999999999988665444 455566666655443321   111  11334889999999999999743211


Q ss_pred             ccccccCCccccccccCCCCCchHHHHHHHHHHHHHHHHHHHh---HHHHhhc----CCCchhHH----HHHHHHHHHHH
Q 022016          157 KLLNTEFLPEKSFLFRSSGGENWLLGCLFLFASACCWSLWLIL---QVPVSAS----YPDHLSLS----AWMCFLATLQS  225 (304)
Q Consensus       157 ~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~l~a~~~~a~~~~~---~k~~~~~----~~~~~~~~----~~~~~~~~l~~  225 (304)
                        +      +++.. ++..+.+..+|.+.++++++.-|..+.-   .|...+.    ..+|....    ...+.-|.+.-
T Consensus       158 --K------e~~~~-~~~~efn~~kGl~iAv~sGv~Sa~fn~g~~ag~pi~~~a~a~G~~~l~~~l~~~vvv~~GGf~tN  228 (344)
T PF06379_consen  158 --K------EKELG-EEAKEFNFKKGLIIAVLSGVMSACFNFGLDAGKPIHEAAVAAGVNPLYANLPVYVVVLWGGFITN  228 (344)
T ss_pred             --h------hhhhc-cchhhhhhhhhHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHcCCCcHHHhCchhhhhhhhHHHHH
Confidence              1      11111 1123445669999999997765555443   3332111    11222211    12223344444


Q ss_pred             HHHHHhcC---CCcc---cccc-cC--cchHHHHHHHHhhccchheeeeeeeecccCce----eeeeccchHHHHHHHHH
Q 022016          226 ATFAIFTE---PDPE---AWNL-HS--SLEIFCCFFSGAIGSGVSFCVQAWCISKRGPL----FSAMFNPLCTVIVTILA  292 (304)
Q Consensus       226 ~~~~~~~~---~~~~---~~~~-~~--~~~~~~~~~~g~~~~~~~~~l~~~~~~~~~a~----~~s~~~~l~pv~a~l~~  292 (304)
                      ....++..   .+.+   ++.. .+  .......+..|. -=..++.+|.++-.++++.    --...+.+..+++-+.+
T Consensus       229 ~~yc~~~l~~~k~~s~~~d~~~~~~~~~~N~~~~aLaG~-lWy~qfffYg~G~s~lg~~~~~~sW~i~ma~~vl~snvwG  307 (344)
T PF06379_consen  229 LIYCLILLAKNKNWSWKGDYSVAKPPLLKNYLFCALAGV-LWYSQFFFYGMGESKLGASGPFSSWAIHMALIVLFSNVWG  307 (344)
T ss_pred             HHHHHHHHhhcCCCccccccccccchhHHHHHHHHHHHH-HHHHHHHHHHHHHHHhcCccccHHHHHHHHHHHHHHHHHH
Confidence            44443321   1221   1111 11  122333333333 2345666777777777754    23455666666777766


Q ss_pred             HHHhCC
Q 022016          293 ALLLHE  298 (304)
Q Consensus       293 ~~~~~e  298 (304)
                      .+. +|
T Consensus       308 l~l-kE  312 (344)
T PF06379_consen  308 LIL-KE  312 (344)
T ss_pred             HHH-HH
Confidence            443 44

This family includes two characterised members, both of which function as L-rhamnose:H+ symporters and have 10 GES predicted transmembrane domains.; GO: 0015153 rhamnose transmembrane transporter activity, 0008645 hexose transport, 0016021 integral to membrane

>PF00893 Multi_Drug_Res: Small Multidrug Resistance protein; InterPro: IPR000390 Members of this family which have been characterised, belong to the small multidrug resistance (Smr) protein family and are integral membrane proteins

Probab=91.41  E-value=0.087  Score=38.58  Aligned_cols=48  Identities=21%  Similarity=0.296  Sum_probs=27.9

Q ss_pred             ccchheeeeeeeecccCceeeee-ccchHHHHHHHHHHHHhCCccccCC
Q 022016          257 GSGVSFCVQAWCISKRGPLFSAM-FNPLCTVIVTILAALLLHEEIYTGR  304 (304)
Q Consensus       257 ~~~~~~~l~~~~~~~~~a~~~s~-~~~l~pv~a~l~~~~~~~e~~~~~~  304 (304)
                      +.++++.++.+++|+++.+.+=+ ..-+..+...+.+.+++||++|..+
T Consensus        38 ~~~~s~~~l~~al~~lp~~vaYavw~g~g~v~~~~~~~~~f~E~~s~~~   86 (93)
T PF00893_consen   38 GYGLSFYFLSLALKKLPLSVAYAVWTGLGIVGVTLVGVFFFGESLSLSK   86 (93)
T ss_dssp             HHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHH--------
T ss_pred             HHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHhCCCCCHHH
Confidence            55778899999999999999844 4568999999999999999998753

They confer resistance to a wide range of toxic compounds by removing them for the cells. The efflux is coupled to an influx of protons. An example is Escherichia coli mvrC P23895 from SWISSPROT which prevents the incorporation of methyl viologen into cells [] and is involved in ethidium bromide efflux [].; GO: 0016021 integral to membrane; PDB: 2I68_A.

>KOG1443 consensus Predicted integral membrane protein [Function unknown]

Probab=91.09  E-value=6.4  Score=35.21  Aligned_cols=138  Identities=21%  Similarity=0.173  Sum_probs=96.7

Q ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHHhcC----CChHHHHHHHHHHHHHHHHHHHHhhhccccC----------CCCCHH
Q 022016            6 DYKPAMAMLALQFSYAVVALSTRAALLQG----MNPRVFVVYRQAIATLFMAPMAYLSSRKYKS----------SSMGLR   71 (304)
Q Consensus         6 ~~~g~~~~l~~~~~~~~~~~~~k~~~~~~----~~p~~~~~~R~~~a~~~l~~~~~~~~~~~~~----------~~~~~~   71 (304)
                      +..|.+.+..+..+=|.=|.+.+..++++    =+|....+.-.-.-.+.++|..+..++....          +....+
T Consensus       162 ~i~Gf~lv~~aS~~sGlRW~~tQ~ll~~~~~~~~~P~~ti~~l~p~M~~~Ll~~~l~fEG~~~~~~s~~f~~~d~~~~~r  241 (349)
T KOG1443|consen  162 NIEGFFLVLAASLLSGLRWAFTQMLLRNQPSAKRNPIDTIFHLQPWMSIGLLPLSLLFEGLHLITSSSIFRFQDTGLILR  241 (349)
T ss_pred             eehhHHHHHHHHHhhhhhHHHHHHHHhcCccccCCCeeeHHHhhhHHHHHHHHHHHHHcccccchhhhHHHhcCccHHHH
Confidence            45688889999999999999999988763    2577777776667777777766655542220          111122


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhccccchhhhhcchhHHHHHHHHHHHhcccccccccccchhhhHHHHHHHhHhhh
Q 022016           72 SFSLIFFIALLGVTINQNTYFEGLYLASSSMASAMGNLIPAITFVMASIVGLEKIDLGSVRSVAKILGTIFCVGGAISM  150 (304)
Q Consensus        72 ~~~~~~~~g~~~~~~~~~~~~~al~~~~~~~a~~i~~~~Pi~~~lla~l~~~er~~~~~~~~~~~~~g~~l~~~G~~li  150 (304)
                      ....+...|.+. ++--.+-+.=+..++.-..++..---=+.+.+++..+.+|+++..      .+.|..++..|+..=
T Consensus       242 v~g~i~l~g~la-F~l~~sEflLl~~Ts~ltlSIaGI~Kel~tl~la~ii~~d~ls~l------N~~Gl~i~~agi~~~  313 (349)
T KOG1443|consen  242 VIGLISLGGLLA-FLLEFSEFLLLSRTSSLTLSIAGIVKEVCTLLLAIIILKDQLSLL------NWLGLAICLAGILLH  313 (349)
T ss_pred             HHHHHHHHHHHH-HHHHHHHHheeeeccceeeeHHHHHHHHHHHHHHHHHhhcchhhh------HHHHHHHHHHHHHHh
Confidence            333344445554 333344455566777777777777777889999999999999998      999999999998877

>KOG2766 consensus Predicted membrane protein [Function unknown]

Probab=87.80  E-value=0.89  Score=39.47  Aligned_cols=137  Identities=12%  Similarity=-0.006  Sum_probs=94.3

Q ss_pred             ccchHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHhhhccccCCCCCH-HHHHHHHHHHHH
Q 022016            4 LRDYKPAMAMLALQFSYAVVALSTRAALLQGMNPRVFVVYRQAIATLFMAPMAYLSSRKYKSSSMGL-RSFSLIFFIALL   82 (304)
Q Consensus         4 ~~~~~g~~~~l~~~~~~~~~~~~~k~~~~~~~~p~~~~~~R~~~a~~~l~~~~~~~~~~~~~~~~~~-~~~~~~~~~g~~   82 (304)
                      .++.+|-+++++++.+++.+.+.-.+..++ .|..++..+--+.++++-.+= .+.++++. ..++| .+...++. ..+
T Consensus       162 snp~~GD~lvi~GATlYaVSNv~EEflvkn-~d~~elm~~lgLfGaIIsaIQ-~i~~~~~~-~tl~w~~~i~~yl~-f~L  237 (336)
T KOG2766|consen  162 SNPVKGDFLVIAGATLYAVSNVSEEFLVKN-ADRVELMGFLGLFGAIISAIQ-FIFERHHV-STLHWDSAIFLYLR-FAL  237 (336)
T ss_pred             CCCccCcEEEEecceeeeeccccHHHHHhc-CcHHHHHHHHHHHHHHHHHHH-Hhhhccce-eeEeehHHHHHHHH-HHH
Confidence            467888999999999999999999999876 999999998888888877664 34455444 43444 22233333 444


Q ss_pred             HHHHHHHHHHHHhhccccchhhhhcchhHHHHHHHHHHHhcccccccccccchhhhHHHHHHHhHhhhhh
Q 022016           83 GVTINQNTYFEGLYLASSSMASAMGNLIPAITFVMASIVGLEKIDLGSVRSVAKILGTIFCVGGAISMAL  152 (304)
Q Consensus        83 ~~~~~~~~~~~al~~~~~~~a~~i~~~~Pi~~~lla~l~~~er~~~~~~~~~~~~~g~~l~~~G~~li~~  152 (304)
                      .+++.+.+.=.=++..+++...+=.-+.-.|..++  ..++-+++|.      -.++-.....|.++-..
T Consensus       238 ~MFllYsl~pil~k~~~aT~~nlslLTsDmwsl~i--~~FgYhv~wL------Y~laF~~i~~GliiYs~  299 (336)
T KOG2766|consen  238 TMFLLYSLAPILIKTNSATMFNLSLLTSDMWSLLI--RTFGYHVDWL------YFLAFATIATGLIIYST  299 (336)
T ss_pred             HHHHHHHhhHHheecCCceEEEhhHhHHHHHHHHH--HHHhcchhhh------hHHHHHHHHHhhEEeec
Confidence            44554444444555555555444445666666665  4556669988      88888888889888764

>PRK10650 multidrug efflux system protein MdtI; Provisional

Probab=87.35  E-value=0.35  Score=36.49  Aligned_cols=47  Identities=6%  Similarity=0.051  Sum_probs=37.7

Q ss_pred             ccchheeeeeeeecccCceee-eeccchHHHHHHHHHHHHhCCccccC
Q 022016          257 GSGVSFCVQAWCISKRGPLFS-AMFNPLCTVIVTILAALLLHEEIYTG  303 (304)
Q Consensus       257 ~~~~~~~l~~~~~~~~~a~~~-s~~~~l~pv~a~l~~~~~~~e~~~~~  303 (304)
                      +.++++.+...++|++|.+.+ +...-+.-+.+.+.+++++||++|+.
T Consensus        44 ~~~~sf~~Ls~al~~lpvgvAYAvW~GiG~v~~~~ig~~~f~e~~~~~   91 (109)
T PRK10650         44 AVLAAFSALSQAVKGIDLSVAYALWGGFGIAATLAAGWILFGQRLNRK   91 (109)
T ss_pred             HHHHHHHHHHHHHhhCchHHHHHHHHHHHHHHHHHHHHHHcCCCCCHH
Confidence            446778888889999988876 55555777888999999999999864

>COG5070 VRG4 Nucleotide-sugar transporter [Carbohydrate transport and metabolism / Posttranslational modification, protein turnover, chaperones / Intracellular trafficking and secretion]

Probab=86.01  E-value=4.4  Score=34.57  Aligned_cols=125  Identities=12%  Similarity=0.083  Sum_probs=91.9

Q ss_pred             HHHHHHHHHHHh-cCCChHHHHHHHHHHHHHHHHHHHHhhhccccC---CCCCHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 022016           21 AVVALSTRAALL-QGMNPRVFVVYRQAIATLFMAPMAYLSSRKYKS---SSMGLRSFSLIFFIALLGVTINQNTYFEGLY   96 (304)
Q Consensus        21 ~~~~~~~k~~~~-~~~~p~~~~~~R~~~a~~~l~~~~~~~~~~~~~---~~~~~~~~~~~~~~g~~~~~~~~~~~~~al~   96 (304)
                      +..-..+|...+ +...-.+.+++..+.+..++..+....+.+...   ..++.-.+.+.++.|+.. +.-..|.-+.++
T Consensus       168 aafVL~mrkri~ltNf~d~dtmfYnNllslPiL~~~s~~~edws~~n~annl~~d~l~am~ISgl~s-vgiSy~saWcvr  246 (309)
T COG5070         168 AAFVLIMRKRIKLTNFKDFDTMFYNNLLSLPILLSFSFLFEDWSPGNLANNLSVDSLMAMFISGLCS-VGISYCSAWCVR  246 (309)
T ss_pred             HHHHHHHHHhhcccccchhhHHHHhhhHHHHHHHHHHHHhccCCcchhhcCCChHHHHHHHHHHHHH-hhhhhccceeEe
Confidence            333344444432 236678889999999999988877766654320   122334445666677776 555667778899


Q ss_pred             ccccchhhhhcchhHHHHHHHHHHHhcccccccccccchhhhHHHHHHHhHhhhhh
Q 022016           97 LASSSMASAMGNLIPAITFVMASIVGLEKIDLGSVRSVAKILGTIFCVGGAISMAL  152 (304)
Q Consensus        97 ~~~~~~a~~i~~~~Pi~~~lla~l~~~er~~~~~~~~~~~~~g~~l~~~G~~li~~  152 (304)
                      -++.+.-+++..+.-.-..+-+.++++|+.++.      ++.+++++++..++-..
T Consensus       247 VtSSTtySMvGALNKlp~alaGlvffdap~nf~------si~sillGflsg~iYav  296 (309)
T COG5070         247 VTSSTTYSMVGALNKLPIALAGLVFFDAPVNFL------SIFSILLGFLSGAIYAV  296 (309)
T ss_pred             ehhhhHHHHHHHhhhChHHHhhhhhcCCchhHH------HHHHHHHHHHHHHHHHH
Confidence            999999999998888888888999999999999      99999999998888774

>COG3238 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=84.75  E-value=3.6  Score=32.89  Aligned_cols=113  Identities=11%  Similarity=0.052  Sum_probs=72.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHhHHHHhhcCCCchhHHHHHHHHHHHHHHHHHHhcCCCcccccccCcchHHHHHHHHhhccc
Q 022016          180 LLGCLFLFASACCWSLWLILQVPVSASYPDHLSLSAWMCFLATLQSATFAIFTEPDPEAWNLHSSLEIFCCFFSGAIGSG  259 (304)
Q Consensus       180 ~~G~~~~l~a~~~~a~~~~~~k~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~  259 (304)
                      ....+.+++++++-.....++.|+.+...+|.....+.+..|.+.+..+..+.++ ..++....+..|+... .|+++..
T Consensus         4 ~l~ll~~i~aG~~l~~Q~~iN~qL~~~~~spl~As~isf~vGt~~L~~l~l~~~~-~~~~a~~~~~pwW~~~-GG~lGa~   81 (150)
T COG3238           4 YLYLLFAILAGALLPLQAAINGRLARYLGSPLLASLISFLVGTVLLLILLLIKQG-HPGLAAVASAPWWAWI-GGLLGAI   81 (150)
T ss_pred             HHHHHHHHHHhhhhhhHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHHHHHhcC-CCchhhccCCchHHHH-ccchhhh
Confidence            4667888999999999999999998887679999999999999999888886433 2223222222333322 2232221


Q ss_pred             hheeeeeeeecccCcee-eeeccchHHHHHHHHHHHH
Q 022016          260 VSFCVQAWCISKRGPLF-SAMFNPLCTVIVTILAALL  295 (304)
Q Consensus       260 ~~~~l~~~~~~~~~a~~-~s~~~~l~pv~a~l~~~~~  295 (304)
                      . ...-....++++++. ......-+-+.++++|.+=
T Consensus        82 ~-vt~s~~l~p~lGa~~t~~l~i~gQli~glliD~fG  117 (150)
T COG3238          82 F-VTSSILLAPRLGAATTIALVIAGQLIMGLLIDHFG  117 (150)
T ss_pred             h-hhhhHHhccchhHHHHHHHHHHHHHHHHHHHHhhc
Confidence            1 222345666666544 4555566677777777653

>COG4975 GlcU Putative glucose uptake permease [Carbohydrate transport and metabolism]

Probab=84.27  E-value=0.85  Score=39.37  Aligned_cols=79  Identities=19%  Similarity=0.095  Sum_probs=60.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhhccccchhhhhcchhHHHHHHHHHHHhcccccccccccchhhhHHHHHHHhHhh
Q 022016           70 LRSFSLIFFIALLGVTINQNTYFEGLYLASSSMASAMGNLIPAITFVMASIVGLEKIDLGSVRSVAKILGTIFCVGGAIS  149 (304)
Q Consensus        70 ~~~~~~~~~~g~~~~~~~~~~~~~al~~~~~~~a~~i~~~~Pi~~~lla~l~~~er~~~~~~~~~~~~~g~~l~~~G~~l  149 (304)
                      +|....-...|+.- +.++.+++.|.+..+.+++-.+..+.-+...+-+.+++|||-+.+|.  +..+.|+++.++|+.+
T Consensus       206 ~K~t~~nii~G~~W-a~GNl~ml~a~~~~GvAt~FSlSQlgViisTiGGIl~L~ekKtkkEm--~~v~iGiilivvgai~  282 (288)
T COG4975         206 NKYTWLNIIPGLIW-AIGNLFMLLAAQKVGVATSFSLSQLGVIISTIGGILFLGEKKTKKEM--VYVIIGIILIVVGAIL  282 (288)
T ss_pred             HHHHHHHHhhHHHH-HhhHHHHHHhhhhhceeeeeeHhhheeeeeecceEEEEeccCchhhh--hhhhhhHHHHHHHhhh
Confidence            45555566788886 89999999999999999988888888899999999999999998811  1124556666666665


Q ss_pred             hh
Q 022016          150 MA  151 (304)
Q Consensus       150 i~  151 (304)
                      +.
T Consensus       283 lg  284 (288)
T COG4975         283 LG  284 (288)
T ss_pred             hh
Confidence            54

>KOG1582 consensus UDP-galactose transporter related protein [Carbohydrate transport and metabolism]

Probab=83.25  E-value=9.6  Score=33.59  Aligned_cols=140  Identities=14%  Similarity=0.154  Sum_probs=94.2

Q ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHHh-cCCChHHHHHHHHHHHHHHHHHHHHhhhcc----ccCCCCCHHHHHHHHHHH
Q 022016            6 DYKPAMAMLALQFSYAVVALSTRAALL-QGMNPRVFVVYRQAIATLFMAPMAYLSSRK----YKSSSMGLRSFSLIFFIA   80 (304)
Q Consensus         6 ~~~g~~~~l~~~~~~~~~~~~~k~~~~-~~~~p~~~~~~R~~~a~~~l~~~~~~~~~~----~~~~~~~~~~~~~~~~~g   80 (304)
                      +..|++..-.|-+.=+.-.-+....++ ++-+..+++++.+.++.++++........-    ..+.+-+.+.....++.+
T Consensus       188 ~~~Gv~mIsgALl~DA~iGNvQEk~m~~~~~ss~EmvfySy~iG~vflf~~mvlTge~f~a~~fcaehp~~tyGy~~~~s  267 (367)
T KOG1582|consen  188 NLIGVMMISGALLADAVIGNVQEKAMKMNPASSSEMVFYSYGIGFVFLFAPMVLTGELFSAWTFCAEHPVRTYGYAFLFS  267 (367)
T ss_pred             ceeeHHHHHHHHHHHHHhhHHHHHHHhhCCCCcceEEEeeecccHHHHHHHHHhcccchhhhHHHHhCcHhHHHHHHHHH
Confidence            344555554444444444444444443 336778899999999998877765553321    111222455566666666


Q ss_pred             HHHHHHHHHHHHHHhhccccchhhhhcchhHHHHHHHHHHHhcccccccccccchhhhHHHHHHHhHhhhhh
Q 022016           81 LLGVTINQNTYFEGLYLASSSMASAMGNLIPAITFVMASIVGLEKIDLGSVRSVAKILGTIFCVGGAISMAL  152 (304)
Q Consensus        81 ~~~~~~~~~~~~~al~~~~~~~a~~i~~~~Pi~~~lla~l~~~er~~~~~~~~~~~~~g~~l~~~G~~li~~  152 (304)
                      ..+ .++......=++.-++..+..+...---.+++++++++-.+++..      ...+.++.+.|..+-..
T Consensus       268 ~~g-ylG~~~VLalI~~fGA~~aatvTTaRKavTi~lSfllFsKPfT~q------y~~~gllv~lgI~Ln~y  332 (367)
T KOG1582|consen  268 LAG-YLGIVFVLALIKLFGALIAATVTTARKAVTILLSFLLFSKPFTEQ------YVWSGLLVVLGIYLNMY  332 (367)
T ss_pred             HHh-HhhHHHHHHHHHHhchhHHHHHHHhHhHHHHHHHHHHHcCchHHH------HhhhhHHHHHHHHhhcc
Confidence            665 455555555555567777777777777899999999999999998      88899999999998874

>PRK09541 emrE multidrug efflux protein; Reviewed

Probab=82.39  E-value=0.56  Score=35.49  Aligned_cols=47  Identities=11%  Similarity=0.048  Sum_probs=35.5

Q ss_pred             ccchheeeeeeeecccCceeeeec-cchHHHHHHHHHHHHhCCccccC
Q 022016          257 GSGVSFCVQAWCISKRGPLFSAMF-NPLCTVIVTILAALLLHEEIYTG  303 (304)
Q Consensus       257 ~~~~~~~l~~~~~~~~~a~~~s~~-~~l~pv~a~l~~~~~~~e~~~~~  303 (304)
                      +.++++.++..++|+++.+.+=.+ .-+.-+...+.++++|||++|+.
T Consensus        39 ~~~~sf~~l~~al~~ipl~iAYavw~GlG~v~~~l~g~~~f~e~~~~~   86 (110)
T PRK09541         39 CYCASFWLLAQTLAYIPTGIAYAIWSGVGIVLISLLSWGFFGQRLDLP   86 (110)
T ss_pred             HHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHHHHhCCCCCHH
Confidence            445667777788888887776444 44677788999999999999864

>PRK10452 multidrug efflux system protein MdtJ; Provisional

Probab=80.91  E-value=0.64  Score=35.73  Aligned_cols=50  Identities=12%  Similarity=0.185  Sum_probs=41.0

Q ss_pred             HhhccchheeeeeeeecccCceeeeec-cchHHHHHHHHHHHHhCCccccC
Q 022016          254 GAIGSGVSFCVQAWCISKRGPLFSAMF-NPLCTVIVTILAALLLHEEIYTG  303 (304)
Q Consensus       254 g~~~~~~~~~l~~~~~~~~~a~~~s~~-~~l~pv~a~l~~~~~~~e~~~~~  303 (304)
                      .+...++++.++.+++|+++.+.+=.+ .-+.-+.+.+++++++||++|+.
T Consensus        36 ~i~~~~~sf~~ls~al~~lplsiAYavw~GiG~v~~~~ig~~~f~E~~s~~   86 (120)
T PRK10452         36 MLVMISLSYIFLSFAVKKIALGVAYALWEGIGILFITLFSVLLFDESLSLM   86 (120)
T ss_pred             HHHHHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHHHHhCCCCCHH
Confidence            344557788999999999999887555 46888899999999999999864

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	304
2i68_A	137	Protein EMRE; transmembrane protein, small-multidr	98.6
3b5d_A	110	Multidrug transporter EMRE; helical membrane prote	98.43
2i68_A	137	Protein EMRE; transmembrane protein, small-multidr	97.39
3b5d_A	110	Multidrug transporter EMRE; helical membrane prote	96.79

>2i68_A Protein EMRE; transmembrane protein, small-multidrug resistance, transporter, homodimer, dual topology, transport protein; NMR {Escherichia coli}

Probab=98.60  E-value=6.2e-08  Score=75.38  Aligned_cols=69  Identities=13%  Similarity=0.138  Sum_probs=54.1

Q ss_pred             HHHHHHHHHHHHHHHHHhhccccchhhhh-cchhHHHHHHHHHHHhcccccccccccchhhhHHHHHHHhHhhhhh
Q 022016           78 FIALLGVTINQNTYFEGLYLASSSMASAM-GNLIPAITFVMASIVGLEKIDLGSVRSVAKILGTIFCVGGAISMAL  152 (304)
Q Consensus        78 ~~g~~~~~~~~~~~~~al~~~~~~~a~~i-~~~~Pi~~~lla~l~~~er~~~~~~~~~~~~~g~~l~~~G~~li~~  152 (304)
                      +.+++..++++.++..++++.|++.+..+ .++.|+++.++++++++|++++.      +++|+.+.+.|++++..
T Consensus        34 ~l~i~~~~ls~~l~~~alk~i~~s~ay~iw~~l~pv~~~l~g~l~lgE~ls~~------~~~Gi~LIi~GV~ll~~  103 (137)
T 2i68_A           34 VGTIICYCASFWLLAQTLAYIPTGIAYAIWSGVGIVLISLLSWGFFGQRLDLP------AIIGMMLICAGVLIINL  103 (137)
T ss_dssp             CHHHHHHHHHHHHHHHHHC-----CHHHHHHHHHHHHHHHHHHHHHC------------CHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHHHHHHHHHHhCCCCCHH------HHHHHHHHHHHHHHHhc
Confidence            57777789999999999999999999999 79999999999999999999999      99999999999999975

>3b5d_A Multidrug transporter EMRE; helical membrane protein, multidrug resistance transporter, SMR, antiport, inner membrane, transmembrane; HET: P4P; 3.80A {Escherichia coli K12} PDB: 3b61_A 3b62_A*

Probab=98.43  E-value=2.2e-06  Score=64.18  Aligned_cols=69  Identities=13%  Similarity=0.138  Sum_probs=64.2

Q ss_pred             HHHHHHHHHHHHHHHHHhhccccchhhhh-cchhHHHHHHHHHHHhcccccccccccchhhhHHHHHHHhHhhhhh
Q 022016           78 FIALLGVTINQNTYFEGLYLASSSMASAM-GNLIPAITFVMASIVGLEKIDLGSVRSVAKILGTIFCVGGAISMAL  152 (304)
Q Consensus        78 ~~g~~~~~~~~~~~~~al~~~~~~~a~~i-~~~~Pi~~~lla~l~~~er~~~~~~~~~~~~~g~~l~~~G~~li~~  152 (304)
                      ..+.+..++++.++..++++.|.+.+..+ ..+.|+++.+++++++||++++.      |+.|+.+.+.|++++..
T Consensus        34 ~~~~~~~~~~~~~~~~al~~~p~s~ay~i~~g~~~v~~~l~~~~~~~E~~s~~------~~~Gi~lIi~Gv~~l~~  103 (110)
T 3b5d_A           34 VGTIICYCASFWLLAQTLAYIPTGIAYAIWSGVGIVLISLLSWGFFGQRLDLP------AIIGMMLICAGVLIINL  103 (110)
T ss_pred             HHHHHHHHHHHHHHHHHHHhCChhhHHHHHhhHHHHHHHHHHHHHhCCCCCHH------HHHHHHHHHHHHHHHhc
Confidence            56677778999999999999999999998 69999999999999999999999      99999999999999873

>2i68_A Protein EMRE; transmembrane protein, small-multidrug resistance, transporter, homodimer, dual topology, transport protein; NMR {Escherichia coli}

Probab=97.39  E-value=1.7e-05  Score=61.56  Aligned_cols=53  Identities=11%  Similarity=0.056  Sum_probs=38.4

Q ss_pred             HHHhhccchheeeeeeeecccCceeeeec-cchHHHHHHHHHHHHhCCccccCC
Q 022016          252 FSGAIGSGVSFCVQAWCISKRGPLFSAMF-NPLCTVIVTILAALLLHEEIYTGR  304 (304)
Q Consensus       252 ~~g~~~~~~~~~l~~~~~~~~~a~~~s~~-~~l~pv~a~l~~~~~~~e~~~~~~  304 (304)
                      ..++++++++|.+|.+++|+++++++.++ ..+.|+++.+++++++||++++.+
T Consensus        34 ~l~i~~~~ls~~l~~~alk~i~~s~ay~iw~~l~pv~~~l~g~l~lgE~ls~~~   87 (137)
T 2i68_A           34 VGTIICYCASFWLLAQTLAYIPTGIAYAIWSGVGIVLISLLSWGFFGQRLDLPA   87 (137)
T ss_dssp             CHHHHHHHHHHHHHHHHHC-----CHHHHHHHHHHHHHHHHHHHHHC------C
T ss_pred             HHHHHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHHHHHHHHHHhCCCCCHHH
Confidence            36677889999999999999999999999 899999999999999999998753

>3b5d_A Multidrug transporter EMRE; helical membrane protein, multidrug resistance transporter, SMR, antiport, inner membrane, transmembrane; HET: P4P; 3.80A {Escherichia coli K12} PDB: 3b61_A 3b62_A*

Probab=96.79  E-value=0.00012  Score=54.60  Aligned_cols=51  Identities=12%  Similarity=0.061  Sum_probs=46.5

Q ss_pred             HHhhccchheeeeeeeecccCceeeeec-cchHHHHHHHHHHHHhCCccccC
Q 022016          253 SGAIGSGVSFCVQAWCISKRGPLFSAMF-NPLCTVIVTILAALLLHEEIYTG  303 (304)
Q Consensus       253 ~g~~~~~~~~~l~~~~~~~~~a~~~s~~-~~l~pv~a~l~~~~~~~e~~~~~  303 (304)
                      .++++.++++.++.+++|+.|.+.+.++ ..+.|+.+.+.+++++||++|..
T Consensus        35 ~~~~~~~~~~~~~~~al~~~p~s~ay~i~~g~~~v~~~l~~~~~~~E~~s~~   86 (110)
T 3b5d_A           35 GTIICYCASFWLLAQTLAYIPTGIAYAIWSGVGIVLISLLSWGFFGQRLDLP   86 (110)
T ss_pred             HHHHHHHHHHHHHHHHHHhCChhhHHHHHhhHHHHHHHHHHHHHhCCCCCHH
Confidence            5566778899999999999999999998 89999999999999999999864

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00