Citrus Sinensis ID: 022027

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300----
MEKKSVETEGDDDEPITEQELEIVEAIEAAYELSITRKRQLSPPVHNNHTHRPMSITSRRLPSSLVASPSSPSFSLSHCQGANMRLKYPAMRFGGQILYSRTSTEVEMAAIELRRILEANKSEAGQVVVGFDIEWKPTFRKGVLPRKAAVMQICGDSNHCYVMQIIHSGIPPSLQLLLEDSTILKVGVGIGSDAGKVYRDYNVSVKASEDLSYLAKHKIGGDSQKWGLASLTEMLVCKELKKPNRIRLGNWEADVLSKDQLLYAATDAFASWHLYQVLKSLPEPVKDATDQGNQRCSRLDLHNC
ccccccccccccccccHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEEEcccHHHHHHHHHHHHHHHHHHcccccEEEEEEcccccccccccccccEEEEEEEcccEEEEEEcccccccHHHHHHHcccccEEEEEEEHHHHHHHHHHcccccccEEHHHHHHHHHcccccccccHHHHHHHHccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccc
cccccccccccccccccHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccHcccccccccccccccccccccccccEEEEcccEEEEEEcccHHHHHHHHHHHHHHcccccccEEEEEEEEcccccccccccccEEEEEEEccccEEEEEEEEcccccHHHHHHHccccEEEEEEccHHHHHHHHHHcccEEccHHHHHHHHHHHHccccccccHHHHHHHHHcccccccccEEEcccccccccHHHHHHHHHHHHHHHHHHHHHHHccccHcccHHHccHHHcHHHHHcc
mekksvetegdddepitEQELEIVEAIEAAYELSITrkrqlsppvhnnhthrpmsitsrrlpsslvaspsspsfslshcqganmrlkypamrfggqilysrtSTEVEMAAIELRRILEAnkseagqvvvgfdiewkptfrkgvlprKAAVMQICGDSNHCYVMQIIhsgippslqllledstiLKVGvgigsdagkvyrdynvsvkaseDLSYLAKHkiggdsqkwGLASLTEMLVCKelkkpnrirlgnweadvLSKDQLLYAATDAFASWHLYQVLKslpepvkdatdqgnqrcsrldlhnc
mekksvetegdddepiteQELEIVEAIEAAYELSITrkrqlsppvhnnhthrpmsitsrrLPSSLVASPSSPSFSLSHCQGANMRLKYPAMRFGGQILYSRTSTEVEMAAIELRRILEANKSEAGQVVVGFDIEWKPTFRKGVLPRKAAVMQICGDSNHCYVMQIIHSGIPPSLQLLLEDSTILKVGVgigsdagkvyRDYNVSVKASEDLSYLAKHKIGGDSQKWGLASLTEMLVCKELKKPNRIRLGNWEADVLSKDQLLYAATDAFASWHLYQVLKSLPEPVKDAtdqgnqrcsrldlhnc
MEKKSVETEGDDDEPITEQELEIVEAIEAAYELSITRKRQLSPPVHNNHTHRPMSITsrrlpsslvaspsspsfslsHCQGANMRLKYPAMRFGGQILYSRTSTEVEMAAIELRRILEANKSEAGQVVVGFDIEWKPTFRKGVLPRKAAVMQICGDSNHCYVMQIIHSGIPPSLQLLLEDSTILKVGVGIGSDAGKVYRDYNVSVKASEDLSYLAKHKIGGDSQKWGLASLTEMLVCKELKKPNRIRLGNWEADVLSKDQLLYAATDAFASWHLYQVLKSLPEPVKDATDQGNQRCSRLDLHNC
**********************IVEAIEAAYELS********************************************CQGANMRLKYPAMRFGGQILYSRTSTEVEMAAIELRRILEANKSEAGQVVVGFDIEWKPTFRKGVLPRKAAVMQICGDSNHCYVMQIIHSGIPPSLQLLLEDSTILKVGVGIGSDAGKVYRDYNVSVKASEDLSYLAKHKIGGDSQKWGLASLTEMLVCKELKKPNRIRLGNWEADVLSKDQLLYAATDAFASWHLYQVLKS************************
***********DDEPITEQELEIVE************************************************************LKYPAMRFGGQILYSRTSTEVEMAAIELRRILEANKSEAGQVVVGFDIEWKPTFRKGVLPRKAAVMQICGDSNHCYVMQIIHSGIPPSLQLLLEDSTILKVGVGIGSDAGKVYRDYNVSVKASEDLSYLAKHKIGGDSQKWGLASLTEMLVCKELKKPNRIRLGNWEADVLSKDQLLYAATDAFASWHLYQVLKSLPE**************RLDLHNC
***************ITEQELEIVEAIEAAYELSITRKRQLSPPVHNNHTHRPMSITSRR****************SHCQGANMRLKYPAMRFGGQILYSRTSTEVEMAAIELRRILEANKSEAGQVVVGFDIEWKPTFRKGVLPRKAAVMQICGDSNHCYVMQIIHSGIPPSLQLLLEDSTILKVGVGIGSDAGKVYRDYNVSVKASEDLSYLAKHKIGGDSQKWGLASLTEMLVCKELKKPNRIRLGNWEADVLSKDQLLYAATDAFASWHLYQVLKSLPEPV********QRCSRLDLHNC
***********DDEPITEQELEIVEAIEAAYELSIT**********************************************NMRLKYPAMRFGGQILYSRTSTEVEMAAIELRRILEANKSEAGQVVVGFDIEWKPTFRKGVLPRKAAVMQICGDSNHCYVMQIIHSGIPPSLQLLLEDSTILKVGVGIGSDAGKVYRDYNVSVKASEDLSYLAKHKIGGDSQKWGLASLTEMLVCKELKKPNRIRLGNWEADVLSKDQLLYAATDAFASWHLYQVLKSLPE*************S******C
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MEKKSVETEGDDDEPITEQELEIVEAIEAAYELSITRKRQLSPPVHNNHTHRPMSITSRRLPSSLVASPSSPSFSLSHCQGANMRLKYPAMRFGGQILYSRTSTEVEMAAIELRRILEANKSEAGQVVVGFDIEWKPTFRKGVLPRKAAVMQICGDSNHCYVMQIIHSGIPPSLQLLLEDSTILKVGVGIGSDAGKVYRDYNVSVKASEDLSYLAKHKIGGDSQKWGLASLTEMLVCKELKKPNRIRLGNWEADVLSKDQLLYAATDAFASWHLYQVLKSLPEPVKDATDQGNQRCSRLDLHNC
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query304 2.2.26 [Sep-21-2011]
Q84LH3288 Werner Syndrome-like exon yes no 0.878 0.927 0.559 5e-82
O93530 1436 Werner syndrome ATP-depen N/A no 0.703 0.149 0.343 3e-29
Q14191 1432 Werner syndrome ATP-depen yes no 0.625 0.132 0.346 9e-27
O09053 1401 Werner syndrome ATP-depen yes no 0.608 0.132 0.355 7e-26
B3NZ68354 Werner Syndrome-like exon N/A no 0.608 0.522 0.31 4e-18
Q9VE86353 Werner Syndrome-like exon yes no 0.608 0.524 0.295 1e-17
B4PLB3354 Werner Syndrome-like exon N/A no 0.608 0.522 0.3 4e-17
B4I298354 Werner Syndrome-like exon N/A no 0.608 0.522 0.285 7e-17
B4M401330 Werner Syndrome-like exon N/A no 0.75 0.690 0.287 7e-17
B4QUF6354 Werner Syndrome-like exon N/A no 0.608 0.522 0.285 7e-17
>sp|Q84LH3|WEX_ARATH Werner Syndrome-like exonuclease OS=Arabidopsis thaliana GN=WEX PE=1 SV=1 Back     alignment and function desciption
 Score =  304 bits (779), Expect = 5e-82,   Method: Compositional matrix adjust.
 Identities = 159/284 (55%), Positives = 199/284 (70%), Gaps = 17/284 (5%)

Query: 13  DEPITEQELEIVEAIEAAYELSITRKR--------QLSPPVHNNHTHRPMSITS---RRL 61
           D+  TE+EL  ++AIEA+Y  S +           Q +  VH  H   P  I +   R+L
Sbjct: 8   DDAFTEEELLAIDAIEASYNFSRSSSSSSSAAPTVQATTSVHG-HEEDPNQIPNNIRRQL 66

Query: 62  PSSLVASPSSPSFSLSHCQGANMRLKYPAMRFGGQILYSRTSTEVEMAAIELRRILEANK 121
           P S+ +S S   F LS C+  N    +PAMRFGG+ILYS+T+TEV+  A++L ++L+  +
Sbjct: 67  PRSITSSTSYKRFPLSRCRARN----FPAMRFGGRILYSKTATEVDKRAMQLIKVLDTKR 122

Query: 122 SEAGQVVVGFDIEWKPTFRKGVLPRKAAVMQICGDSNHCYVMQIIHSGIPPSLQLLLEDS 181
            E+G   VG DIEW+P+FRKGVLP K A +QIC DSN+C VM I HSGIP SLQ L+EDS
Sbjct: 123 DESGIAFVGLDIEWRPSFRKGVLPGKVATVQICVDSNYCDVMHIFHSGIPQSLQHLIEDS 182

Query: 182 TILKVGVGIGSDAGKVYRDYNVSVKASEDLSYLAKHKIGGDSQKWGLASLTEMLVCKELK 241
           T++KVG+GI  D+ K++ DY VS+K  EDLS LA  KIGGD +KWGLASLTE LVCKEL 
Sbjct: 183 TLVKVGIGIDGDSVKLFHDYGVSIKDVEDLSDLANQKIGGD-KKWGLASLTETLVCKELL 241

Query: 242 KPNRIRLGNWEADVLSKDQLLYAATDAFASWHLYQVLKSLPEPV 285
           KPNRIRLGNWE   LSK QL YAATDA+ASWHLY+VLK LP+ V
Sbjct: 242 KPNRIRLGNWEFYPLSKQQLQYAATDAYASWHLYKVLKDLPDAV 285
Exonuclease that digests recessed strands of DNA duplexes in the 3' to 5' direction but hardly single-stranded DNA or blunt-ended duplexes. Also able to digest 3'-protruding strands and 3'-recessed strand termini of duplexes containing mismatched bases.
Arabidopsis thaliana (taxid: 3702)
EC: 3EC: .EC: 1EC: .EC: -EC: .EC: -
>sp|O93530|WRN_XENLA Werner syndrome ATP-dependent helicase homolog OS=Xenopus laevis GN=wrn PE=2 SV=1 Back     alignment and function description
>sp|Q14191|WRN_HUMAN Werner syndrome ATP-dependent helicase OS=Homo sapiens GN=WRN PE=1 SV=2 Back     alignment and function description
>sp|O09053|WRN_MOUSE Werner syndrome ATP-dependent helicase homolog OS=Mus musculus GN=Wrn PE=1 SV=3 Back     alignment and function description
>sp|B3NZ68|WRNXO_DROER Werner Syndrome-like exonuclease OS=Drosophila erecta GN=WRNexo PE=3 SV=1 Back     alignment and function description
>sp|Q9VE86|WRNXO_DROME Werner Syndrome-like exonuclease OS=Drosophila melanogaster GN=WRNexo PE=1 SV=2 Back     alignment and function description
>sp|B4PLB3|WRNXO_DROYA Werner Syndrome-like exonuclease OS=Drosophila yakuba GN=WRNexo PE=3 SV=1 Back     alignment and function description
>sp|B4I298|WRNXO_DROSE Werner Syndrome-like exonuclease OS=Drosophila sechellia GN=WRNexo PE=3 SV=2 Back     alignment and function description
>sp|B4M401|WRNXO_DROVI Werner Syndrome-like exonuclease OS=Drosophila virilis GN=WRNexo PE=3 SV=2 Back     alignment and function description
>sp|B4QUF6|WRNXO_DROSI Werner Syndrome-like exonuclease OS=Drosophila simulans GN=WRNexo PE=3 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query304
224129176323 predicted protein [Populus trichocarpa] 0.891 0.839 0.584 1e-89
359477935331 PREDICTED: LOW QUALITY PROTEIN: Werner S 0.927 0.851 0.550 2e-83
356567868292 PREDICTED: Werner Syndrome-like exonucle 0.875 0.910 0.578 6e-82
42572893288 Werner Syndrome-like exonuclease [Arabid 0.878 0.927 0.559 3e-80
297800892286 hypothetical protein ARALYDRAFT_493524 [ 0.881 0.937 0.553 1e-79
449528201314 PREDICTED: Werner Syndrome-like exonucle 0.901 0.872 0.534 1e-78
449432388314 PREDICTED: Werner Syndrome-like exonucle 0.901 0.872 0.530 6e-78
30682626285 Werner Syndrome-like exonuclease [Arabid 0.868 0.926 0.552 2e-77
4455316313 putative protein [Arabidopsis thaliana] 0.851 0.827 0.557 2e-77
357462797311 Werner syndrome ATP-dependent helicase [ 0.861 0.842 0.519 2e-70
>gi|224129176|ref|XP_002328909.1| predicted protein [Populus trichocarpa] gi|222839339|gb|EEE77676.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
 Score =  335 bits (860), Expect = 1e-89,   Method: Compositional matrix adjust.
 Identities = 176/301 (58%), Positives = 216/301 (71%), Gaps = 30/301 (9%)

Query: 11  DDDEPITEQELEIVEAIEAAYELS---------------------ITRKRQLSPPVHNNH 49
           D D+P+T+QELE ++AIEA+++ S                     I  KR  SP      
Sbjct: 21  DWDQPLTDQELEAIDAIEASFQSSTPSSSSSSSSSTPAATTPSSSIINKRHSSP----QK 76

Query: 50  THRPMSITSRRLPSSLVASPSSPSFSLSHCQGANMRLKYPAMRFGGQILYSRTSTEVEMA 109
              P   T R+LP+S+  S S P FSLS CQG N++++YPAM+FGGQILYSRTS EVE A
Sbjct: 77  DQEPPK-TRRQLPNSIF-SLSKP-FSLSPCQG-NVKMRYPAMKFGGQILYSRTSIEVEKA 132

Query: 110 AIELRRILEANKSEAGQVVVGFDIEWKPTFRKGVLPRKAAVMQICGDSNHCYVMQIIHSG 169
           A EL + LEA K E  +V++GFDIEWKP+F  GVLP KAAVMQIC +++ C+VM I HSG
Sbjct: 133 ARELLQSLEAEKREMDRVIIGFDIEWKPSFTTGVLPGKAAVMQICANTSLCHVMHIFHSG 192

Query: 170 IPPSLQLLLEDSTILKVGVGIGSDAGKVYRDYNVSVKASEDLSYLAKHKIGGDSQKWGLA 229
           I PSLQ LLEDS ++KVG+GIG D  KV+RDYN SVK+ EDLSYLA  K+ G  + WGL 
Sbjct: 193 ITPSLQFLLEDSKLVKVGIGIGGDCAKVFRDYNASVKSVEDLSYLANQKLDGKPKTWGLQ 252

Query: 230 SLTEMLVCKELKKPNRIRLGNWEADVLSKDQLLYAATDAFASWHLYQVLKSLPEPVKDAT 289
           +L ++LVCKEL+KPN+IRLGNW+ DVLSK+QL YAATDAFASW LYQVLKSLP+  KDAT
Sbjct: 253 ALAKILVCKELQKPNKIRLGNWQVDVLSKEQLQYAATDAFASWQLYQVLKSLPD-AKDAT 311

Query: 290 D 290
           D
Sbjct: 312 D 312

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|359477935|ref|XP_003632043.1| PREDICTED: LOW QUALITY PROTEIN: Werner Syndrome-like exonuclease-like [Vitis vinifera] Back     alignment and taxonomy information
>gi|356567868|ref|XP_003552137.1| PREDICTED: Werner Syndrome-like exonuclease-like [Glycine max] Back     alignment and taxonomy information
>gi|42572893|ref|NP_974543.1| Werner Syndrome-like exonuclease [Arabidopsis thaliana] gi|75327902|sp|Q84LH3.1|WEX_ARATH RecName: Full=Werner Syndrome-like exonuclease gi|28195109|gb|AAO33765.1| Werner Syndrome-like exonuclease [Arabidopsis thaliana] gi|38603882|gb|AAR24686.1| At4g13870 [Arabidopsis thaliana] gi|332657939|gb|AEE83339.1| Werner Syndrome-like exonuclease [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|297800892|ref|XP_002868330.1| hypothetical protein ARALYDRAFT_493524 [Arabidopsis lyrata subsp. lyrata] gi|297314166|gb|EFH44589.1| hypothetical protein ARALYDRAFT_493524 [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information
>gi|449528201|ref|XP_004171094.1| PREDICTED: Werner Syndrome-like exonuclease-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|449432388|ref|XP_004133981.1| PREDICTED: Werner Syndrome-like exonuclease-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|30682626|ref|NP_193123.2| Werner Syndrome-like exonuclease [Arabidopsis thaliana] gi|11121455|emb|CAC14871.1| exonuclease [Arabidopsis thaliana] gi|332657938|gb|AEE83338.1| Werner Syndrome-like exonuclease [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|4455316|emb|CAB36851.1| putative protein [Arabidopsis thaliana] gi|7268091|emb|CAB78429.1| putative protein [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|357462797|ref|XP_003601680.1| Werner syndrome ATP-dependent helicase [Medicago truncatula] gi|355490728|gb|AES71931.1| Werner syndrome ATP-dependent helicase [Medicago truncatula] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query304
TAIR|locus:2119525288 WRNEXO "Werner syndrome-like e 0.891 0.940 0.532 2.6e-70
ZFIN|ZDB-GENE-070702-2 1436 wrn "Werner syndrome" [Danio r 0.608 0.128 0.386 4.6e-30
UNIPROTKB|F1NAR0 1367 F1NAR0 "Uncharacterized protei 0.608 0.135 0.396 1.3e-28
UNIPROTKB|E1BEE6 1404 WRN "Uncharacterized protein" 0.621 0.134 0.371 7e-27
UNIPROTKB|F1RX70 1409 WRN "Uncharacterized protein" 0.625 0.134 0.351 7.1e-27
UNIPROTKB|I3LC91 1507 WRN "Uncharacterized protein" 0.625 0.126 0.351 7.8e-27
UNIPROTKB|O93530 1436 wrn "Werner syndrome ATP-depen 0.664 0.140 0.353 9.3e-27
UNIPROTKB|Q14191 1432 WRN "Werner syndrome ATP-depen 0.625 0.132 0.346 1.8e-25
RGD|1564788 1448 Wrn "Werner syndrome, RecQ hel 0.625 0.131 0.351 1.8e-25
UNIPROTKB|F1PZR2 1336 WRN "Uncharacterized protein" 0.618 0.140 0.360 2.4e-24
TAIR|locus:2119525 WRNEXO "Werner syndrome-like exonuclease" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 712 (255.7 bits), Expect = 2.6e-70, P = 2.6e-70
 Identities = 149/280 (53%), Positives = 184/280 (65%)

Query:    13 DEPITEQELEIVEAIEAAYELSITRKRQLS--PPVH-----NNHTHRPMSITXXXXXXXX 65
             D+  TE+EL  ++AIEA+Y  S +     S  P V      + H   P  I         
Sbjct:     8 DDAFTEEELLAIDAIEASYNFSRSSSSSSSAAPTVQATTSVHGHEEDPNQIPNNIRRQLP 67

Query:    66 XXXXXXXXXXXXHCQGANMRLKYPAMRFGGQILYSRTSTEVEMAAIELRRILEANKSEAG 125
                                R  +PAMRFGG+ILYS+T+TEV+  A++L ++L+  + E+G
Sbjct:    68 RSITSSTSYKRFPLSRCRAR-NFPAMRFGGRILYSKTATEVDKRAMQLIKVLDTKRDESG 126

Query:   126 QVVVGFDIEWKPTFRKGVLPRKAAVMQICGDSNHCYVMQIIHSGIPPSLQLLLEDSTILK 185
                VG DIEW+P+FRKGVLP K A +QIC DSN+C VM I HSGIP SLQ L+EDST++K
Sbjct:   127 IAFVGLDIEWRPSFRKGVLPGKVATVQICVDSNYCDVMHIFHSGIPQSLQHLIEDSTLVK 186

Query:   186 VGVGIGSDAGKVYRDYNVSVKASEDLSYLAKHKIGGDSQKWGLASLTEMLVCKELKKPNR 245
             VG+GI  D+ K++ DY VS+K  EDLS LA  KIGGD +KWGLASLTE LVCKEL KPNR
Sbjct:   187 VGIGIDGDSVKLFHDYGVSIKDVEDLSDLANQKIGGD-KKWGLASLTETLVCKELLKPNR 245

Query:   246 IRLGNWEADVLSKDQLLYAATDAFASWHLYQVLKSLPEPV 285
             IRLGNWE   LSK QL YAATDA+ASWHLY+VLK LP+ V
Sbjct:   246 IRLGNWEFYPLSKQQLQYAATDAYASWHLYKVLKDLPDAV 285
GO:0003676 "nucleic acid binding" evidence=IEA;ISS
GO:0005622 "intracellular" evidence=IEA;ISS
GO:0005634 "nucleus" evidence=ISM
GO:0006139 "nucleobase-containing compound metabolic process" evidence=IEA
GO:0008408 "3'-5' exonuclease activity" evidence=IEA;ISS;IDA
GO:0005515 "protein binding" evidence=IPI
ZFIN|ZDB-GENE-070702-2 wrn "Werner syndrome" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
UNIPROTKB|F1NAR0 F1NAR0 "Uncharacterized protein" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
UNIPROTKB|E1BEE6 WRN "Uncharacterized protein" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
UNIPROTKB|F1RX70 WRN "Uncharacterized protein" [Sus scrofa (taxid:9823)] Back     alignment and assigned GO terms
UNIPROTKB|I3LC91 WRN "Uncharacterized protein" [Sus scrofa (taxid:9823)] Back     alignment and assigned GO terms
UNIPROTKB|O93530 wrn "Werner syndrome ATP-dependent helicase homolog" [Xenopus laevis (taxid:8355)] Back     alignment and assigned GO terms
UNIPROTKB|Q14191 WRN "Werner syndrome ATP-dependent helicase" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
RGD|1564788 Wrn "Werner syndrome, RecQ helicase-like" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
UNIPROTKB|F1PZR2 WRN "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q84LH3WEX_ARATH3, ., 1, ., -, ., -0.55980.87820.9270yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query304
cd06141170 cd06141, WRN_exo, DEDDy 3'-5' exonuclease domain o 2e-61
smart00474172 smart00474, 35EXOc, 3'-5' exonuclease 3e-27
cd06129161 cd06129, RNaseD_like, DEDDy 3'-5' exonuclease doma 9e-24
cd09018150 cd09018, DEDDy_polA_RNaseD_like_exo, DEDDy 3'-5' e 2e-21
pfam01612172 pfam01612, DNA_pol_A_exo1, 3'-5' exonuclease 3e-20
cd06146193 cd06146, mut-7_like_exo, DEDDy 3'-5' exonuclease d 4e-20
cd06148197 cd06148, Egl_like_exo, DEDDy 3'-5' exonuclease dom 4e-05
COG0349 361 COG0349, Rnd, Ribonuclease D [Translation, ribosom 6e-05
cd06142178 cd06142, RNaseD_exo, DEDDy 3'-5' exonuclease domai 1e-04
>gnl|CDD|176653 cd06141, WRN_exo, DEDDy 3'-5' exonuclease domain of WRN and similar proteins Back     alignment and domain information 
 Score =  192 bits (489), Expect = 2e-61
 Identities = 75/169 (44%), Positives = 104/169 (61%), Gaps = 6/169 (3%)

Query: 112 ELRRILEANKSEAGQVVVGFDIEWKPTFRKGVLPRKAAVMQICGDSNHCYVMQIIH-SGI 170
           +    ++       + VVGFD EW+P+FRKG    K A++Q+    + C + Q+ H   +
Sbjct: 6   DAEEAVKELLG--KEKVVGFDTEWRPSFRKGK-RNKVALLQLA-TESRCLLFQLAHMDKL 61

Query: 171 PPSLQLLLEDSTILKVGVGIGSDAGKVYRDYNVSVKASEDLSYLAKHKIGGDSQKWGLAS 230
           PPSL+ LLED +ILKVGVGI  DA K+ RD+ + V+   DLS+LAK   G   +   LA 
Sbjct: 62  PPSLKQLLEDPSILKVGVGIKGDARKLARDFGIEVRGVVDLSHLAKRV-GPRRKLVSLAR 120

Query: 231 LTEMLVCKELKKPNRIRLGNWEADVLSKDQLLYAATDAFASWHLYQVLK 279
           L E ++   L KP ++R  NWEA  LSK+Q+LYAATDA+AS  LY+ L 
Sbjct: 121 LVEEVLGLPLSKPKKVRCSNWEARPLSKEQILYAATDAYASLELYRKLL 169

WRN is a unique RecQ DNA helicase exhibiting an exonuclease activity. It contains a DEDDy-type DnaQ-like 3'-5' exonuclease domain possessing three conserved sequence motifs termed ExoI, ExoII and ExoIII, with a specific YX(3)D pattern at ExoIII. These motifs are clustered around the active site and contain four conserved acidic residues that serve as ligands for the two metal ions required for catalysis. Mutations in the WRN gene cause Werner syndrome, an autosomal recessive disorder associated with premature aging and increased susceptibility to cancer and type II diabetes. WRN interacts with key proteins involved in DNA replication, recombination, and repair. It is believed to maintain genomic stability and life span by participating in DNA processes. WRN is stimulated by Ku70/80, an important regulator of genomic stability. Length = 170
>gnl|CDD|214681 smart00474, 35EXOc, 3'-5' exonuclease Back     alignment and domain information
>gnl|CDD|176650 cd06129, RNaseD_like, DEDDy 3'-5' exonuclease domain of RNase D, WRN, and similar proteins Back     alignment and domain information
>gnl|CDD|176656 cd09018, DEDDy_polA_RNaseD_like_exo, DEDDy 3'-5' exonuclease domain of family-A DNA polymerases, RNase D, WRN, and similar proteins Back     alignment and domain information
>gnl|CDD|216604 pfam01612, DNA_pol_A_exo1, 3'-5' exonuclease Back     alignment and domain information
>gnl|CDD|176655 cd06146, mut-7_like_exo, DEDDy 3'-5' exonuclease domain of Caenorhabditis elegans mut-7 and similar proteins Back     alignment and domain information
>gnl|CDD|99851 cd06148, Egl_like_exo, DEDDy 3'-5' exonuclease domain of Drosophila Egalitarian (Egl) and similar proteins Back     alignment and domain information
>gnl|CDD|223426 COG0349, Rnd, Ribonuclease D [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>gnl|CDD|176654 cd06142, RNaseD_exo, DEDDy 3'-5' exonuclease domain of Ribonuclease D and similar proteins Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 304
cd06146193 mut-7_like_exo DEDDy 3'-5' exonuclease domain of C 99.97
cd06129161 RNaseD_like DEDDy 3'-5' exonuclease domain of RNas 99.97
cd06141170 WRN_exo DEDDy 3'-5' exonuclease domain of WRN and 99.97
PRK10829 373 ribonuclease D; Provisional 99.93
PF01612176 DNA_pol_A_exo1: 3'-5' exonuclease; InterPro: IPR00 99.93
cd06148197 Egl_like_exo DEDDy 3'-5' exonuclease domain of Dro 99.93
TIGR01388 367 rnd ribonuclease D. This model describes ribonucle 99.91
COG0349 361 Rnd Ribonuclease D [Translation, ribosomal structu 99.89
smart00474172 35EXOc 3'-5' exonuclease. 3\' -5' exonuclease proo 99.81
cd06142178 RNaseD_exo DEDDy 3'-5' exonuclease domain of Ribon 99.8
cd09018150 DEDDy_polA_RNaseD_like_exo DEDDy 3'-5' exonuclease 99.74
cd06147192 Rrp6p_like_exo DEDDy 3'-5' exonuclease domain of y 99.73
KOG4373319 consensus Predicted 3'-5' exonuclease [General fun 99.7
cd00007155 35EXOc 3'-5' exonuclease. The 35EXOc domain is res 99.67
KOG2207617 consensus Predicted 3'-5' exonuclease [Replication 99.56
PRK05755 880 DNA polymerase I; Provisional 99.51
cd06140178 DNA_polA_I_Bacillus_like_exo inactive DEDDy 3'-5' 99.47
KOG2206 687 consensus Exosome 3'-5' exoribonuclease complex, s 99.42
cd06139193 DNA_polA_I_Ecoli_like_exo DEDDy 3'-5' exonuclease 99.36
COG0749 593 PolA DNA polymerase I - 3'-5' exonuclease and poly 99.2
PRK14975 553 bifunctional 3'-5' exonuclease/DNA polymerase; Pro 99.09
TIGR00593 887 pola DNA polymerase I. This family is based on the 99.08
cd06128151 DNA_polA_exo DEDDy 3'-5' exonuclease domain of fam 99.03
cd06143174 PAN2_exo DEDDh 3'-5' exonuclease domain of the euk 96.54
cd06149157 ISG20 DEDDh 3'-5' exonuclease domain of Interferon 96.42
cd06144152 REX4_like DEDDh 3'-5' exonuclease domain of RNA ex 96.32
cd06145150 REX1_like DEDDh 3'-5' exonuclease domain of RNA ex 96.11
cd06137161 DEDDh_RNase DEDDh 3'-5' exonuclease domain of the 96.11
cd05780195 DNA_polB_Kod1_like_exo DEDDy 3'-5' exonuclease dom 96.1
cd0612596 DnaQ_like_exo DnaQ-like (or DEDD) 3'-5' exonucleas 96.03
PRK06063 313 DNA polymerase III subunit epsilon; Provisional 96.01
KOG2249280 consensus 3'-5' exonuclease [Replication, recombin 96.0
cd05160199 DEDDy_DNA_polB_exo DEDDy 3'-5' exonuclease domain 95.98
PRK06310250 DNA polymerase III subunit epsilon; Validated 95.94
PRK08517257 DNA polymerase III subunit epsilon; Provisional 95.79
PRK05711240 DNA polymerase III subunit epsilon; Provisional 95.6
PRK07740244 hypothetical protein; Provisional 95.46
PRK07883 557 hypothetical protein; Validated 95.33
PRK09146239 DNA polymerase III subunit epsilon; Validated 95.29
PRK07246 820 bifunctional ATP-dependent DNA helicase/DNA polyme 95.25
PRK06807 313 DNA polymerase III subunit epsilon; Validated 95.08
PRK09145202 DNA polymerase III subunit epsilon; Validated 94.97
PRK06309232 DNA polymerase III subunit epsilon; Validated 94.87
TIGR01407 850 dinG_rel DnaQ family exonuclease/DinG family helic 94.11
KOG3657 1075 consensus Mitochondrial DNA polymerase gamma, cata 93.63
cd06127159 DEDDh DEDDh 3'-5' exonuclease domain family. DEDDh 93.24
PRK07942232 DNA polymerase III subunit epsilon; Provisional 93.1
PRK08074 928 bifunctional ATP-dependent DNA helicase/DNA polyme 92.67
cd05784193 DNA_polB_II_exo DEDDy 3'-5' exonuclease domain of 92.23
cd06130156 DNA_pol_III_epsilon_like an uncharacterized bacter 92.23
TIGR01405 1213 polC_Gram_pos DNA polymerase III, alpha chain, Gra 92.12
cd06134189 RNaseT DEDDh 3'-5' exonuclease domain of RNase T. 91.92
KOG2248380 consensus 3'-5' exonuclease [Replication, recombin 91.9
PRK06195 309 DNA polymerase III subunit epsilon; Validated 91.48
cd06131167 DNA_pol_III_epsilon_Ecoli_like DEDDh 3'-5' exonucl 91.43
TIGR01406225 dnaQ_proteo DNA polymerase III, epsilon subunit, P 90.99
cd05781188 DNA_polB_B3_exo DEDDy 3'-5' exonuclease domain of 90.76
cd05783204 DNA_polB_B1_exo DEDDy 3'-5' exonuclease domain of 90.76
smart00479169 EXOIII exonuclease domain in DNA-polymerase alpha 90.08
PF09281138 Taq-exonuc: Taq polymerase, exonuclease; InterPro: 89.4
cd06136177 TREX1_2 DEDDh 3'-5' exonuclease domain of three pr 89.26
TIGR00573217 dnaq exonuclease, DNA polymerase III, epsilon subu 88.79
cd05779204 DNA_polB_epsilon_exo DEDDy 3'-5' exonuclease domai 88.66
PRK09182294 DNA polymerase III subunit epsilon; Validated 88.56
PRK05601 377 DNA polymerase III subunit epsilon; Validated 88.5
cd05785207 DNA_polB_like2_exo Uncharacterized bacterial subgr 88.4
TIGR01298200 RNaseT ribonuclease T. in gamma-subdivision Proteo 87.53
PRK05168211 ribonuclease T; Provisional 87.38
PRK07247195 DNA polymerase III subunit epsilon; Validated 87.14
PRK11779 476 sbcB exonuclease I; Provisional 85.63
KOG12751118 consensus PAB-dependent poly(A) ribonuclease, subu 85.42
PRK07983219 exodeoxyribonuclease X; Provisional 82.68
PRK07748207 sporulation inhibitor KapD; Provisional 82.47
>cd06146 mut-7_like_exo DEDDy 3'-5' exonuclease domain of Caenorhabditis elegans mut-7 and similar proteins Back     alignment and domain information 
Probab=99.97  E-value=2.2e-30  Score=227.21  Aligned_cols=170  Identities=30%  Similarity=0.486  Sum_probs=144.9

Q ss_pred             EEEecCHHHHHHHHHH--HHHHHhhcccccCCceEEEEeeeecCccCCCCCCcEEEEEEEecCCeEEEEecCCC------
Q 022027           97 ILYSRTSTEVEMAAIE--LRRILEANKSEAGQVVVGFDIEWKPTFRKGVLPRKAAVMQICGDSNHCYVMQIIHS------  168 (304)
Q Consensus        97 i~~i~t~~~l~~~~~~--l~~~~~~~~~~~~~~~vgfD~E~~~~~~~g~~~~~valiQL~~~~~~~~l~~l~~~------  168 (304)
                      |.+|++++++++++.+  +..          ..+||||+||.+.+..|. .+++++||||+. +.||+||+...      
T Consensus         1 ~~~i~~~~el~~~~~~~~l~~----------~~vig~D~Ew~~~~~~~~-~~~v~LiQiat~-~~~~lid~~~~~~~~~~   68 (193)
T cd06146           1 IHIVDSEEELEALLLALSLEA----------GRVVGIDSEWKPSFLGDS-DPRVAILQLATE-DEVFLLDLLALENLESE   68 (193)
T ss_pred             CeEecCHHHHHHHHHHHhhcc----------CCEEEEECccCCCccCCC-CCCceEEEEecC-CCEEEEEchhccccchH
Confidence            5688999999999998  544          799999999998765442 368999999987 68999998643      


Q ss_pred             CCcHHHHHhHcCCCceEEEecchHHHHHHHHhcCC------ccCCcchHHHHHHHHhCC---------CCCCCCHHHHHH
Q 022027          169 GIPPSLQLLLEDSTILKVGVGIGSDAGKVYRDYNV------SVKASEDLSYLAKHKIGG---------DSQKWGLASLTE  233 (304)
Q Consensus       169 ~~~~~L~~lL~d~~i~KVG~~ik~Dl~~L~~~~gi------~l~~~~Dl~~LA~ylL~~---------~~~~~sL~~La~  233 (304)
                      .+++.|+++|+|++|+||||++++|+.+|++.||+      .+.|++|++.++..+...         ....+||+.|++
T Consensus        69 ~~~~~L~~ll~d~~i~KVg~~~~~D~~~L~~~~~~~~~~~~~~~~v~Dl~~~a~~l~~~~~~~~~~~~~~~~~sL~~l~~  148 (193)
T cd06146          69 DWDRLLKRLFEDPDVLKLGFGFKQDLKALSASYPALKCMFERVQNVLDLQNLAKELQKSDMGRLKGNLPSKTKGLADLVQ  148 (193)
T ss_pred             HHHHHHHHHhCCCCeeEEEechHHHHHHHHHhcCccccccccCCceEEHHHHHHHHhhccccccccccCcccCCHHHHHH
Confidence            25678999999999999999999999999989987      367899998777654321         124789999999


Q ss_pred             HHcCcccCCCCccccCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhC
Q 022027          234 MLVCKELKKPNRIRLGNWEADVLSKDQLLYAATDAFASWHLYQVLKS  280 (304)
Q Consensus       234 ~~Lg~~l~K~~~i~~s~W~~~pLt~~Qi~YAA~DA~a~~~L~~~L~~  280 (304)
                      ++||..++|.  .++|||..+||+++|+.|||.||++++.||+.|.+
T Consensus       149 ~~lg~~l~K~--~q~SdW~~rpLs~~Qi~YAA~Da~~l~~l~~~L~~  193 (193)
T cd06146         149 EVLGKPLDKS--EQCSNWERRPLREEQILYAALDAYCLLEVFDKLLE  193 (193)
T ss_pred             HHhCCCcCcc--cccCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhC
Confidence            9999999885  58999999999999999999999999999999863

The mut-7 subfamily is composed of Caenorhabditis elegans mut-7 and similar proteins found in plants and metazoans. Mut-7 is implicated in posttranscriptional gene silencing. It contains a DEDDy-type DnaQ-like 3'-5' exonuclease domain possessing three conserved sequence motifs, termed ExoI, ExoII and ExoIII, with a specific YX(3)D pattern at ExoIII. These motifs are clustered around the active site and contain four conserved acidic residues that serve as ligands for the two metal ions required for catalysis.
>cd06129 RNaseD_like DEDDy 3'-5' exonuclease domain of RNase D, WRN, and similar proteins Back     alignment and domain information
>cd06141 WRN_exo DEDDy 3'-5' exonuclease domain of WRN and similar proteins Back     alignment and domain information
>PRK10829 ribonuclease D; Provisional Back     alignment and domain information
>PF01612 DNA_pol_A_exo1: 3'-5' exonuclease; InterPro: IPR002562 This domain is responsible for the 3'-5' exonuclease proofreading activity of Escherichia coli DNA polymerase I (polI) and other enzymes, it catalyses the hydrolysis of unpaired or mismatched nucleotides Back     alignment and domain information
>cd06148 Egl_like_exo DEDDy 3'-5' exonuclease domain of Drosophila Egalitarian (Egl) and similar proteins Back     alignment and domain information
>TIGR01388 rnd ribonuclease D Back     alignment and domain information
>COG0349 Rnd Ribonuclease D [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>smart00474 35EXOc 3'-5' exonuclease Back     alignment and domain information
>cd06142 RNaseD_exo DEDDy 3'-5' exonuclease domain of Ribonuclease D and similar proteins Back     alignment and domain information
>cd09018 DEDDy_polA_RNaseD_like_exo DEDDy 3'-5' exonuclease domain of family-A DNA polymerases, RNase D, WRN, and similar proteins Back     alignment and domain information
>cd06147 Rrp6p_like_exo DEDDy 3'-5' exonuclease domain of yeast Rrp6p, human polymyositis/scleroderma autoantigen 100kDa, and similar proteins Back     alignment and domain information
>KOG4373 consensus Predicted 3'-5' exonuclease [General function prediction only] Back     alignment and domain information
>cd00007 35EXOc 3'-5' exonuclease Back     alignment and domain information
>KOG2207 consensus Predicted 3'-5' exonuclease [Replication, recombination and repair] Back     alignment and domain information
>PRK05755 DNA polymerase I; Provisional Back     alignment and domain information
>cd06140 DNA_polA_I_Bacillus_like_exo inactive DEDDy 3'-5' exonuclease domain of Bacillus stearothermophilus DNA polymerase I and similar family-A DNA polymerases Back     alignment and domain information
>KOG2206 consensus Exosome 3'-5' exoribonuclease complex, subunit PM/SCL-100 (Rrp6) [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>cd06139 DNA_polA_I_Ecoli_like_exo DEDDy 3'-5' exonuclease domain of Escherichia coli DNA polymerase I and similar bacterial family-A DNA polymerases Back     alignment and domain information
>COG0749 PolA DNA polymerase I - 3'-5' exonuclease and polymerase domains [DNA replication, recombination, and repair] Back     alignment and domain information
>PRK14975 bifunctional 3'-5' exonuclease/DNA polymerase; Provisional Back     alignment and domain information
>TIGR00593 pola DNA polymerase I Back     alignment and domain information
>cd06128 DNA_polA_exo DEDDy 3'-5' exonuclease domain of family-A DNA polymerases Back     alignment and domain information
>cd06143 PAN2_exo DEDDh 3'-5' exonuclease domain of the eukaryotic exoribonuclease PAN2 Back     alignment and domain information
>cd06149 ISG20 DEDDh 3'-5' exonuclease domain of Interferon Stimulated Gene product of 20 kDa, and similar proteins Back     alignment and domain information
>cd06144 REX4_like DEDDh 3'-5' exonuclease domain of RNA exonuclease 4, XPMC2, Interferon Stimulated Gene product of 20 kDa, and similar proteins Back     alignment and domain information
>cd06145 REX1_like DEDDh 3'-5' exonuclease domain of RNA exonuclease 1, -3 and similar eukaryotic proteins Back     alignment and domain information
>cd06137 DEDDh_RNase DEDDh 3'-5' exonuclease domain of the eukaryotic exoribonucleases PAN2, RNA exonuclease (REX)-1,-3, and -4, ISG20, and similar proteins Back     alignment and domain information
>cd05780 DNA_polB_Kod1_like_exo DEDDy 3'-5' exonuclease domain of Pyrococcus kodakaraensis Kod1 and similar archaeal family-B DNA polymerases Back     alignment and domain information
>cd06125 DnaQ_like_exo DnaQ-like (or DEDD) 3'-5' exonuclease domain superfamily Back     alignment and domain information
>PRK06063 DNA polymerase III subunit epsilon; Provisional Back     alignment and domain information
>KOG2249 consensus 3'-5' exonuclease [Replication, recombination and repair] Back     alignment and domain information
>cd05160 DEDDy_DNA_polB_exo DEDDy 3'-5' exonuclease domain of family-B DNA polymerases Back     alignment and domain information
>PRK06310 DNA polymerase III subunit epsilon; Validated Back     alignment and domain information
>PRK08517 DNA polymerase III subunit epsilon; Provisional Back     alignment and domain information
>PRK05711 DNA polymerase III subunit epsilon; Provisional Back     alignment and domain information
>PRK07740 hypothetical protein; Provisional Back     alignment and domain information
>PRK07883 hypothetical protein; Validated Back     alignment and domain information
>PRK09146 DNA polymerase III subunit epsilon; Validated Back     alignment and domain information
>PRK07246 bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon; Validated Back     alignment and domain information
>PRK06807 DNA polymerase III subunit epsilon; Validated Back     alignment and domain information
>PRK09145 DNA polymerase III subunit epsilon; Validated Back     alignment and domain information
>PRK06309 DNA polymerase III subunit epsilon; Validated Back     alignment and domain information
>TIGR01407 dinG_rel DnaQ family exonuclease/DinG family helicase, putative Back     alignment and domain information
>KOG3657 consensus Mitochondrial DNA polymerase gamma, catalytic subunit [Replication, recombination and repair] Back     alignment and domain information
>cd06127 DEDDh DEDDh 3'-5' exonuclease domain family Back     alignment and domain information
>PRK07942 DNA polymerase III subunit epsilon; Provisional Back     alignment and domain information
>PRK08074 bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon; Validated Back     alignment and domain information
>cd05784 DNA_polB_II_exo DEDDy 3'-5' exonuclease domain of Escherichia coli DNA polymerase II and similar bacterial family-B DNA polymerases Back     alignment and domain information
>cd06130 DNA_pol_III_epsilon_like an uncharacterized bacterial subgroup of the DEDDh 3'-5' exonuclease domain family with similarity to the epsilon subunit of DNA polymerase III Back     alignment and domain information
>TIGR01405 polC_Gram_pos DNA polymerase III, alpha chain, Gram-positive type Back     alignment and domain information
>cd06134 RNaseT DEDDh 3'-5' exonuclease domain of RNase T Back     alignment and domain information
>KOG2248 consensus 3'-5' exonuclease [Replication, recombination and repair] Back     alignment and domain information
>PRK06195 DNA polymerase III subunit epsilon; Validated Back     alignment and domain information
>cd06131 DNA_pol_III_epsilon_Ecoli_like DEDDh 3'-5' exonuclease domain of the epsilon subunit of Escherichia coli DNA polymerase III and similar proteins Back     alignment and domain information
>TIGR01406 dnaQ_proteo DNA polymerase III, epsilon subunit, Proteobacterial Back     alignment and domain information
>cd05781 DNA_polB_B3_exo DEDDy 3'-5' exonuclease domain of Sulfurisphaera ohwakuensis DNA polymerase B3 and similar archaeal family-B DNA polymerases Back     alignment and domain information
>cd05783 DNA_polB_B1_exo DEDDy 3'-5' exonuclease domain of Sulfolobus solfataricus DNA polymerase B1 and similar archaeal family-B DNA polymerases Back     alignment and domain information
>smart00479 EXOIII exonuclease domain in DNA-polymerase alpha and epsilon chain, ribonuclease T and other exonucleases Back     alignment and domain information
>PF09281 Taq-exonuc: Taq polymerase, exonuclease; InterPro: IPR015361 This domain is found in prokaryotic Taq DNA polymerase (thermostable), where it assumes a ribonuclease H-like motif Back     alignment and domain information
>cd06136 TREX1_2 DEDDh 3'-5' exonuclease domain of three prime repair exonuclease (TREX)1, TREX2, and similar proteins Back     alignment and domain information
>TIGR00573 dnaq exonuclease, DNA polymerase III, epsilon subunit family Back     alignment and domain information
>cd05779 DNA_polB_epsilon_exo DEDDy 3'-5' exonuclease domain of eukaryotic DNA polymerase epsilon, a family-B DNA polymerase Back     alignment and domain information
>PRK09182 DNA polymerase III subunit epsilon; Validated Back     alignment and domain information
>PRK05601 DNA polymerase III subunit epsilon; Validated Back     alignment and domain information
>cd05785 DNA_polB_like2_exo Uncharacterized bacterial subgroup of the DEDDy 3'-5' exonuclease domain of family-B DNA polymerases Back     alignment and domain information
>TIGR01298 RNaseT ribonuclease T Back     alignment and domain information
>PRK05168 ribonuclease T; Provisional Back     alignment and domain information
>PRK07247 DNA polymerase III subunit epsilon; Validated Back     alignment and domain information
>PRK11779 sbcB exonuclease I; Provisional Back     alignment and domain information
>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair] Back     alignment and domain information
>PRK07983 exodeoxyribonuclease X; Provisional Back     alignment and domain information
>PRK07748 sporulation inhibitor KapD; Provisional Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query304
2fbt_A205 Wrn Exonuclease Length = 205 3e-27
2e6l_A208 Structure Of Mouse Wrn Exonuclease Domain Length = 1e-26
>pdb|2FBT|A Chain A, Wrn Exonuclease Length = 205 Back     alignment and structure 
Iteration: 1

 Score =  118 bits (296), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 69/199 (34%), Positives = 113/199 (56%), Gaps = 9/199 (4%)
Query: 89  PAMRFGGQILYSRTSTEVEMAAIELRRILEANKSEAGQVVVGFDIEWKPTFRKGVLPRKA 148
           P + F G I+YS  +++    + ++   L          VVGFD+EW P + +G L  K 
Sbjct: 14  PFLEFTGSIVYSYDASDCSFLSEDISMSLSDGD------VVGFDMEWPPLYNRGKLG-KV 66
Query: 149 AVMQICGDSNHCYVMQIIH-SGIPPSLQLLLEDSTILKVGVGIGSDAGKVYRDYNVSVKA 207
           A++Q+C   + CY+  +   S  P  L++LLE+  + K GVGI  D  K+ RD+++ +K 
Sbjct: 67  ALIQLCVSESKCYLFHVSSMSVFPQGLKMLLENKAVKKAGVGIEGDQWKLLRDFDIKLKN 126
Query: 208 SEDLSYLAKHKIGGDSQKWGLASLTEMLVCKELKKPNRIRLGNWEADVLSKDQLLYAATD 267
             +L+ +A  K+   ++ W L SL + L+ K+L K   IR  NW    L++DQ LYAATD
Sbjct: 127 FVELTDVANKKLKC-TETWSLNSLVKHLLGKQLLKDKSIRCSNWSKFPLTEDQKLYAATD 185
Query: 268 AFASWHLYQVLKSLPEPVK 286
           A+A + +Y+ L+ L + V+
Sbjct: 186 AYAGFIIYRNLEILDDTVQ 204
>pdb|2E6L|A Chain A, Structure Of Mouse Wrn Exonuclease Domain Length = 208 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query304
2e6m_A208 Werner syndrome ATP-dependent helicase homolog; AP 2e-58
1vk0_A206 Hypothetical protein; homohexamer, AT5G06450, stru 7e-54
>2e6m_A Werner syndrome ATP-dependent helicase homolog; APO form, hydrolase; 2.00A {Mus musculus} PDB: 2e6l_A 2fby_A 2fbv_A 2fbx_A 2fbt_A 2fc0_A* Length = 208 Back     alignment and structure
 Score =  185 bits (471), Expect = 2e-58
 Identities = 68/201 (33%), Positives = 111/201 (55%), Gaps = 9/201 (4%)

Query: 87  KYPAMRFGGQILYSRTSTEVEMAAIELRRILEANKSEAGQVVVGFDIEWKPTFRKGVLPR 146
             P + F G I+YS  +++    + ++   L          VVGFD+EW P ++ G    
Sbjct: 7   NLPFLEFPGSIVYSYEASDCSFLSEDISMRLSDGD------VVGFDMEWPPIYKPGKRS- 59

Query: 147 KAAVMQICGDSNHCYVMQIIHSG-IPPSLQLLLEDSTILKVGVGIGSDAGKVYRDYNVSV 205
           + AV+Q+C   + CY+  I      P  L++LLE+ +I K GVGI  D  K+ RD++V +
Sbjct: 60  RVAVIQLCVSESKCYLFHISSMSVFPQGLKMLLENKSIKKAGVGIEGDQWKLLRDFDVKL 119

Query: 206 KASEDLSYLAKHKIGGDSQKWGLASLTEMLVCKELKKPNRIRLGNWEADVLSKDQLLYAA 265
           ++  +L+ +A  K+   ++ W L  L + ++ K+L K   IR  NW    L++DQ LYAA
Sbjct: 120 ESFVELTDVANEKLKC-AETWSLNGLVKHVLGKQLLKDKSIRCSNWSNFPLTEDQKLYAA 178

Query: 266 TDAFASWHLYQVLKSLPEPVK 286
           TDA+A   +YQ L +L + V+
Sbjct: 179 TDAYAGLIIYQKLGNLGDTVQ 199
>1vk0_A Hypothetical protein; homohexamer, AT5G06450, struc genomics, protein structure initiative, center for eukaryot structural genomics, CESG; 2.10A {Arabidopsis thaliana} SCOP: c.55.3.5 PDB: 2q3s_A Length = 206 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query304
2e6m_A208 Werner syndrome ATP-dependent helicase homolog; AP 100.0
1vk0_A206 Hypothetical protein; homohexamer, AT5G06450, stru 99.97
3saf_A 428 Exosome component 10; exoribonuclease, RNA exosome 99.92
2hbj_A 410 Exosome complex exonuclease RRP6; RNA metabolism, 99.91
1yt3_A 375 Ribonuclease D, RNAse D; exoribonuclease, exonucle 99.89
3cym_A 440 Uncharacterized protein BAD_0989; structural genom 99.83
2kfn_A 605 Klenow fragment of DNA polymerase I; complex (poly 99.69
3pv8_A 592 DNA polymerase I; DNA polymerase I, protein-DNA co 99.58
1x9m_A 698 DNA polymerase; DNA ploymerase, N-2-acetylaminoflu 99.29
4dfk_A 540 DNA polymerase I, thermostable; DNA polymerase, tr 98.9
1bgx_T 832 TAQ DNA polymerase; DNA polymerase, FAB, PCR, inhi 98.11
3v9w_A235 Ribonuclease T; DEDD nucleases family, EXO-nucleas 97.42
2p1j_A186 POLIII, DNA polymerase III POLC-type; structural g 96.63
1wlj_A189 Interferon stimulated gene 20KDA; exoribonuclease, 96.1
3mxm_B242 Three prime repair exonuclease 1; RNAse H-like fol 95.01
1y97_A238 Three prime repair exonuclease 2; TREX2, hydrolase 94.2
3u3y_B314 Three prime repair exonuclease 1; RNAse H fold, 3' 94.01
2gui_A194 DNA polymerase III epsilon subunit; DNA polymerase 93.1
1w0h_A204 3'-5' exonuclease ERI1; nuclease domain, hydrolase 92.01
2f96_A224 Ribonuclease T; RNAse, RNT, RNAse T, tRNA hydrolas 91.49
1qht_A 775 Protein (DNA polymerase); archaea, hyperthermostab 90.02
1zbh_A299 3'-5' exonuclease ERI1; histone mRNA 3'-END-specif 87.71
1zbu_A349 ERI-1 homolog, 3'-5' exonuclease ERI1; hydrolase; 85.8
3ikm_A 1172 DNA polymerase subunit gamma-1; human mitochondria 83.6
2qxf_A 482 Exodeoxyribonuclease I; alpha-beta domain, DNAQ su 81.84
>2e6m_A Werner syndrome ATP-dependent helicase homolog; APO form, hydrolase; 2.00A {Mus musculus} PDB: 2e6l_A 2fby_A 2fbv_A 2fbx_A 2fbt_A 2fc0_A* Back     alignment and structure
Probab=100.00  E-value=8.1e-32  Score=236.79  Aligned_cols=196  Identities=35%  Similarity=0.631  Sum_probs=161.9

Q ss_pred             cccccCCCceecCCcEEEecCHHHHHHHHHHHHHHHhhcccccCCceEEEEeeeecCccCCCCCCcEEEEEEEecCCeEE
Q 022027           82 ANMRLKYPAMRFGGQILYSRTSTEVEMAAIELRRILEANKSEAGQVVVGFDIEWKPTFRKGVLPRKAAVMQICGDSNHCY  161 (304)
Q Consensus        82 ~~~~~~lP~~~~~g~i~~i~t~~~l~~~~~~l~~~~~~~~~~~~~~~vgfD~E~~~~~~~g~~~~~valiQL~~~~~~~~  161 (304)
                      +.++++||.+.|+|+|+|+++.+++..+++.+...+.      ....+|||+||.+.|..+. ..+++++|+|+.++.|+
T Consensus         2 ~~~~~~lp~~~f~g~i~~i~~~~~~~~~~~~~~~~l~------~~~~v~~D~E~~~~~~~~~-~~~~~~iqla~~~~~~~   74 (208)
T 2e6m_A            2 SVLEDNLPFLEFPGSIVYSYEASDCSFLSEDISMRLS------DGDVVGFDMEWPPIYKPGK-RSRVAVIQLCVSESKCY   74 (208)
T ss_dssp             -----CCCBCCCCSEEEEECSHHHHHHHHHHHHHHCC------TTCEEEEEEECCC---CCS-CCCCCEEEEECSSSEEE
T ss_pred             cchhccCCccccCCcEEEEeCHHHHHHHHHHHHHHhc------cCCEEEEEeecCCCCCCCC-CCCeEEEEEecCCCeEE
Confidence            4678999999999999999999999877766654332      2467999999987533221 35799999998657899


Q ss_pred             EEecCCC-CCcHHHHHhHcCCCceEEEecchHHHHHHHHhcCCccCCcchHHHHHHHHhCCCCCCCCHHHHHHHHcCccc
Q 022027          162 VMQIIHS-GIPPSLQLLLEDSTILKVGVGIGSDAGKVYRDYNVSVKASEDLSYLAKHKIGGDSQKWGLASLTEMLVCKEL  240 (304)
Q Consensus       162 l~~l~~~-~~~~~L~~lL~d~~i~KVG~~ik~Dl~~L~~~~gi~l~~~~Dl~~LA~ylL~~~~~~~sL~~La~~~Lg~~l  240 (304)
                      +|++.+. .+++.|+++|+|+.+.||||++|+|++.|.+.+|+.+.+++|++++|+|++++ ..++||+.|++++||..+
T Consensus        75 ~i~~~~~~~~~~~L~~lL~d~~i~Kv~~~~k~D~~~L~~~~gi~~~~~fDlt~lAayll~~-~~~~~L~~L~~~~l~~~~  153 (208)
T 2e6m_A           75 LFHISSMSVFPQGLKMLLENKSIKKAGVGIEGDQWKLLRDFDVKLESFVELTDVANEKLKC-AETWSLNGLVKHVLGKQL  153 (208)
T ss_dssp             EECGGGCSSCCHHHHHHHTCTTSEEEESSHHHHHHHHHHHHCCCCCSEEEHHHHHHHHTTC-CCCCCHHHHHHHHHSCBC
T ss_pred             EEECcccccchHHHHHHhcCCCceEEEEeeHHHHHHHHHHCCCCCCCEEEHHHHHHHHccC-CCChhHHHHHHHHcCCCc
Confidence            9988653 57789999999999999999999999999777999999988966999999986 468999999999999998


Q ss_pred             CCCCccccCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCCcc
Q 022027          241 KKPNRIRLGNWEADVLSKDQLLYAATDAFASWHLYQVLKSLPEPV  285 (304)
Q Consensus       241 ~K~~~i~~s~W~~~pLt~~Qi~YAA~DA~a~~~L~~~L~~l~~~~  285 (304)
                      .|+++.+++||..+||+++|+.|||.||++++.||..|.+.....
T Consensus       154 ~K~k~~~~s~W~~~~L~~~q~~YAa~Da~~~~~L~~~L~~~L~~~  198 (208)
T 2e6m_A          154 LKDKSIRCSNWSNFPLTEDQKLYAATDAYAGLIIYQKLGNLGDTV  198 (208)
T ss_dssp             CCCHHHHTSCTTSSSCCHHHHHHHHHHHHHHHHHHHHHHTCC---
T ss_pred             CCCCCeeeCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHhccchh
Confidence            887677899999999999999999999999999999999866544
>1vk0_A Hypothetical protein; homohexamer, AT5G06450, struc genomics, protein structure initiative, center for eukaryot structural genomics, CESG; 2.10A {Arabidopsis thaliana} SCOP: c.55.3.5 PDB: 2q3s_A Back     alignment and structure
>3saf_A Exosome component 10; exoribonuclease, RNA exosome, hydrolase; 2.50A {Homo sapiens} PDB: 3sag_A 3sah_A 2cpr_A Back     alignment and structure
>2hbj_A Exosome complex exonuclease RRP6; RNA metabolism, RNA surveillance, RNA processing, hydrolase, gene regulation; 2.10A {Saccharomyces cerevisiae} SCOP: a.60.8.4 c.55.3.5 PDB: 2hbk_A 2hbl_A* 2hbm_A* Back     alignment and structure
>1yt3_A Ribonuclease D, RNAse D; exoribonuclease, exonuclease, hydrolase, tRNA processing, hydrolase,translation; 1.60A {Escherichia coli} SCOP: a.60.8.3 a.60.8.3 c.55.3.5 Back     alignment and structure
>3cym_A Uncharacterized protein BAD_0989; structural genomics, unknown function; 2.10A {Bifidobacterium adolescentis atcc 1570ORGANISM_TAXID} Back     alignment and structure
>2kfn_A Klenow fragment of DNA polymerase I; complex (polymerase/DNA), exonuclease, transferase, transferase/DNA complex; HET: US1; 2.03A {Escherichia coli} SCOP: c.55.3.5 e.8.1.1 PDB: 1d9f_A* 1d9d_A* 1krp_A* 1ksp_A* 1qsl_A* 1kfs_A* 2kfz_A* 2kzm_A* 2kzz_A* 1dpi_A* 1kfd_A* 1kln_A* 1d8y_A* Back     alignment and structure
>3pv8_A DNA polymerase I; DNA polymerase I, protein-DNA complex, thymine-adenine, CLOS conformation; HET: DNA 2DT D3T; 1.52A {Geobacillus kaustophilus} PDB: 3px0_A* 3px4_A* 3px6_A* 3thv_A* 3ti0_A* 4dse_A* 4dsf_A* 4ds4_A* 4dqp_A* 4dqi_A* 4ds5_A* 4e0d_A* 4dqr_A* 4dqq_A* 3tan_A* 3tap_A* 3taq_A* 3tar_A* 4dqs_A* 3hp6_A* ... Back     alignment and structure
>1x9m_A DNA polymerase; DNA ploymerase, N-2-acetylaminofluorene, replication block, mutagenesis, transferase/electron transport/DNA complex; HET: DNA 2DT 8FG; 2.10A {Enterobacteria phage T7} SCOP: c.55.3.5 e.8.1.1 PDB: 1skr_A* 1skw_A* 1sl0_A* 1sks_A* 1sl2_A* 1t7p_A* 1t8e_A* 1tk0_A* 1tk5_A* 1tk8_A* 1tkd_A* 1sl1_A* 1x9s_A* 1x9w_A* 1zyq_A* 2ajq_A* Back     alignment and structure
>4dfk_A DNA polymerase I, thermostable; DNA polymerase, transferase-DNA complex; HET: DNA DOC 0L5; 1.65A {Thermus aquaticus} PDB: 1jxe_A* 3ktq_A* 3lwl_A* 3lwm_A* 3m8s_A* 3m8r_A* 3oju_A* 3rr7_A* 3rr8_A* 3rrg_A* 3ojs_A* 3rtv_A* 3sv3_A* 3sv4_A* 3syz_A* 3sz2_A* 3t3f_A* 4df4_A* 4df8_A* 4dfj_A* ... Back     alignment and structure
>1bgx_T TAQ DNA polymerase; DNA polymerase, FAB, PCR, inhibition, helix-coil dynamics, inhibitor design, complex (polymerase/inhibitor); 2.30A {Thermus aquaticus} SCOP: a.60.7.1 c.120.1.2 c.55.3.5 e.8.1.1 PDB: 1cmw_A 1tau_A* 1taq_A* Back     alignment and structure
>3v9w_A Ribonuclease T; DEDD nucleases family, EXO-nucleases, hydrolase-DNA complex; HET: DNA; 1.70A {Escherichia coli} PDB: 3ngy_A 3v9u_A* 3ngz_A* 3va3_A* 3v9z_A* 3nh0_A 3nh2_A 3nh1_A* 3v9s_A* 3v9x_A* 3va0_A* 2is3_A Back     alignment and structure
>2p1j_A POLIII, DNA polymerase III POLC-type; structural genomics, exonuclease, PSI-2, protein structure initiative; HET: DNA; 2.50A {Thermotoga maritima MSB8} Back     alignment and structure
>1wlj_A Interferon stimulated gene 20KDA; exoribonuclease, hydrolase; HET: U5P; 1.90A {Homo sapiens} SCOP: c.55.3.5 Back     alignment and structure
>3mxm_B Three prime repair exonuclease 1; RNAse H-like fold, polyproline type II helix, hydrolase-DNA; HET: DNA; 1.75A {Mus musculus} SCOP: c.55.3.5 PDB: 3mxj_B 2ioc_B 3mxi_B* 3b6o_A* 2o4g_A* 3b6p_A* 2o4i_A 2oa8_A Back     alignment and structure
>1y97_A Three prime repair exonuclease 2; TREX2, hydrolase; 2.50A {Homo sapiens} SCOP: c.55.3.5 Back     alignment and structure
>3u3y_B Three prime repair exonuclease 1; RNAse H fold, 3' exonuclease, homodimer, hydrolase-DNA compl; HET: BU1; 2.28A {Mus musculus} PDB: 3u6f_B* Back     alignment and structure
>2gui_A DNA polymerase III epsilon subunit; DNA polymerase proofreading domain, transferase; HET: DNA U5P; 1.60A {Escherichia coli} SCOP: c.55.3.5 PDB: 1j54_A* 1j53_A* 2ido_A* 2xy8_A* Back     alignment and structure
>1w0h_A 3'-5' exonuclease ERI1; nuclease domain, hydrolase; HET: AMP; 1.59A {Homo sapiens} SCOP: c.55.3.5 Back     alignment and structure
>2f96_A Ribonuclease T; RNAse, RNT, RNAse T, tRNA hydrolase, SAD, PS protein structure initiative, midwest center for structural genomics; 2.09A {Pseudomonas aeruginosa} SCOP: c.55.3.5 Back     alignment and structure
>1qht_A Protein (DNA polymerase); archaea, hyperthermostable, family B polymer alpha family polymerase, transferase; 2.10A {Thermococcus SP} SCOP: c.55.3.5 e.8.1.1 PDB: 1tgo_A 2xhb_A* 2vwj_A* 2vwk_A* 1wns_A* 1wn7_A 1qqc_A* 4ahc_A* 4ail_C* 3a2f_A* 2jgu_A* 1d5a_A Back     alignment and structure
>1zbh_A 3'-5' exonuclease ERI1; histone mRNA 3'-END-specific recognition, structures of 3'- exonuclease and ITS RNA complex, hydrolase/RNA complex; HET: AMP; 3.00A {Homo sapiens} Back     alignment and structure
>1zbu_A ERI-1 homolog, 3'-5' exonuclease ERI1; hydrolase; HET: AMP; 3.00A {Homo sapiens} Back     alignment and structure
>3ikm_A DNA polymerase subunit gamma-1; human mitochondrial DNA polymerase, disease mutation, DNA replication, DNA-binding, DNA-directed DNA polymerase; HET: DNA; 3.24A {Homo sapiens} Back     alignment and structure
>2qxf_A Exodeoxyribonuclease I; alpha-beta domain, DNAQ superfamily, SH3-like domain, produc structure, DNA damage, DNA repair, exonuclease; HET: TMP; 1.50A {Escherichia coli} SCOP: c.55.3.5 PDB: 1fxx_A* 3c94_A 3c95_A 3hl8_A* 3hp9_A* Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 304
d1vk0a_206 c.55.3.5 (A:) Hypothetical protein AT5G06450 {Thal 6e-33
d2hhva1171 c.55.3.5 (A:298-468) Exonuclease domain of prokary 2e-08
d2hbka2292 c.55.3.5 (A:129-420) Exosome complex exonuclease R 8e-07
d1yt3a3193 c.55.3.5 (A:1-193) Ribonuclease D, catalytic domai 1e-06
d1kfsa1195 c.55.3.5 (A:324-518) Exonuclease domain of prokary 0.003
>d1vk0a_ c.55.3.5 (A:) Hypothetical protein AT5G06450 {Thale-cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 206 Back     information, alignment and structure

class: Alpha and beta proteins (a/b)
fold: Ribonuclease H-like motif
superfamily: Ribonuclease H-like
family: DnaQ-like 3'-5' exonuclease
domain: Hypothetical protein AT5G06450
species: Thale-cress (Arabidopsis thaliana) [TaxId: 3702]

 Score =  118 bits (297), Expect = 6e-33
 Identities = 30/176 (17%), Positives = 65/176 (36%), Gaps = 12/176 (6%)

Query: 112 ELRRILEANKSEAGQVVVGFDIEWKPTFRKGVLPR-----KAAVMQICGDSNHCYVMQII 166
            L  I E +    G   V FD+ W   F +            + +++    N C  +++ 
Sbjct: 33  YLSLIREDSILN-GNRAVIFDVYWDVGFPETETKTKTSGWSLSSVKLS-TRNLCLFLRLP 90

Query: 167 HSG--IPPSLQLLLEDSTILKVGVGIGSDAGKVYRDYNVSVKASEDLSYLA-KHKIGGDS 223
                    L        +  VGV I  D   +  ++ + ++ + ++  LA + +     
Sbjct: 91  KPFHDNLKDLYRFFASKFVTFVGVQIEEDLDLLRENHGLVIRNAINVGKLAAEARGTLVL 150

Query: 224 QKWGLASLTEMLVCKELKKPNRIRLGNWEADVLSKDQLLYAATDAFASWHLYQVLK 279
           +  G   L   ++  +L + + I    WE     ++QL  AA + +   +++  L 
Sbjct: 151 EFLGTRELAHRVLWSDLGQLDSIE-AKWE-KAGPEEQLEAAAIEGWLIVNVWDQLS 204
>d2hhva1 c.55.3.5 (A:298-468) Exonuclease domain of prokaryotic DNA polymerase {Bacillus stearothermophilus, newly identified strain as yet unnamed [TaxId: 1422]} Length = 171 Back     information, alignment and structure
>d2hbka2 c.55.3.5 (A:129-420) Exosome complex exonuclease RRP6 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 292 Back     information, alignment and structure
>d1yt3a3 c.55.3.5 (A:1-193) Ribonuclease D, catalytic domain {Escherichia coli [TaxId: 562]} Length = 193 Back     information, alignment and structure
>d1kfsa1 c.55.3.5 (A:324-518) Exonuclease domain of prokaryotic DNA polymerase {Escherichia coli [TaxId: 562]} Length = 195 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query304
d1vk0a_206 Hypothetical protein AT5G06450 {Thale-cress (Arabi 99.96
d1yt3a3193 Ribonuclease D, catalytic domain {Escherichia coli 99.96
d2hbka2292 Exosome complex exonuclease RRP6 {Baker's yeast (S 99.95
d1kfsa1195 Exonuclease domain of prokaryotic DNA polymerase { 99.83
d2hhva1171 Exonuclease domain of prokaryotic DNA polymerase { 99.75
d1wlja_173 Interferon-stimulated gene 20 kDa protein, ISG20 { 97.5
d1x9ma1204 Exonuclease domain of T7 DNA polymerase {Bacteriop 96.2
d1tgoa1347 Exonuclease domain of family B DNA polymerases {Ar 95.1
d2guia1174 N-terminal exonuclease domain of the epsilon subun 92.35
d3b6oa1226 Three prime repair exonuclease 1, TREX1 {Mouse (Mu 89.89
d1qtma1130 Exonuclease domain of prokaryotic DNA polymerase { 89.41
d1s5ja1410 Exonuclease domain of family B DNA polymerases {Su 85.87
>d1vk0a_ c.55.3.5 (A:) Hypothetical protein AT5G06450 {Thale-cress (Arabidopsis thaliana) [TaxId: 3702]} Back     information, alignment and structure
class: Alpha and beta proteins (a/b)
fold: Ribonuclease H-like motif
superfamily: Ribonuclease H-like
family: DnaQ-like 3'-5' exonuclease
domain: Hypothetical protein AT5G06450
species: Thale-cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=99.96  E-value=6.9e-30  Score=222.90  Aligned_cols=178  Identities=17%  Similarity=0.226  Sum_probs=143.5

Q ss_pred             cEEEecCHHHHHHHHHHHHHHHhhcccccCCceEEEEeeeecCccCCCC-----CCcEEEEEEEecCCeEEEEecCCC--
Q 022027           96 QILYSRTSTEVEMAAIELRRILEANKSEAGQVVVGFDIEWKPTFRKGVL-----PRKAAVMQICGDSNHCYVMQIIHS--  168 (304)
Q Consensus        96 ~i~~i~t~~~l~~~~~~l~~~~~~~~~~~~~~~vgfD~E~~~~~~~g~~-----~~~valiQL~~~~~~~~l~~l~~~--  168 (304)
                      +++.+.+.+++..++..+......    .+..+||||+||.+.+..+..     ..++++||||+. +.||+|++.+.  
T Consensus        20 ~~i~~~~~~~~~~~~~~i~~~~~~----~~~~~v~~D~Ew~~~~~~~~~~~~~~~~~vallQl~t~-~~~~l~~l~~~~~   94 (206)
T d1vk0a_          20 KTIDVGSSTDISPYLSLIREDSIL----NGNRAVIFDVYWDVGFPETETKTKTSGWSLSSVKLSTR-NLCLFLRLPKPFH   94 (206)
T ss_dssp             EEEECCSSCCCHHHHHHHHHHHHH----HSTTEEEEEEEEECCC------CGGGGCEEEEEEEECS-SEEEEEECCSSCC
T ss_pred             eeEecCCHHHHHHHHHHHHHHHhh----cCCCEEEEEeecCCCCCcccccccccCceeEEEEEEeC-CCEEEEECCcccc
Confidence            345566666677776665441100    125789999999886543321     236999999997 78999999753  


Q ss_pred             CCcHHHHHhHcCCCceEEEecchHHHHHHHHhcCCccCCcchHHHHHHHHhCCC-CCCCCHHHHHHHHcCcccCCCCccc
Q 022027          169 GIPPSLQLLLEDSTILKVGVGIGSDAGKVYRDYNVSVKASEDLSYLAKHKIGGD-SQKWGLASLTEMLVCKELKKPNRIR  247 (304)
Q Consensus       169 ~~~~~L~~lL~d~~i~KVG~~ik~Dl~~L~~~~gi~l~~~~Dl~~LA~ylL~~~-~~~~sL~~La~~~Lg~~l~K~~~i~  247 (304)
                      ..+..|++||+|+.|+||||++++|+.+|++.||+.+.+.+|++++|.++++.+ ...+||+.|++.+||..+.|.+ .+
T Consensus        95 ~~~~~L~~~L~~~~i~kVG~~i~~D~~~L~~~~gi~~~~~~Dl~~la~~~~~~~~~~~~gL~~L~~~~Lg~~l~K~~-~~  173 (206)
T d1vk0a_          95 DNLKDLYRFFASKFVTFVGVQIEEDLDLLRENHGLVIRNAINVGKLAAEARGTLVLEFLGTRELAHRVLWSDLGQLD-SI  173 (206)
T ss_dssp             GGGHHHHHHHTCSSSEEEESSCHHHHHHHHHHHCCCCSSEEEHHHHHHHHHTCGGGGGCCHHHHHHHHHCCCCHHHH-HH
T ss_pred             ccHHHHHHHhcCCCceEEEEeEHHHHHHHHHhcCCcccceEEchHHHHHhhcCCccccchHHHHHHHHhcccCCCcc-ee
Confidence            468899999999999999999999999998899999999999999999887643 2478999999999999998864 56


Q ss_pred             cCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhC
Q 022027          248 LGNWEADVLSKDQLLYAATDAFASWHLYQVLKS  280 (304)
Q Consensus       248 ~s~W~~~pLt~~Qi~YAA~DA~a~~~L~~~L~~  280 (304)
                      +|||+ +||+++|++|||.|||+++.||+.|..
T Consensus       174 ~SnW~-~pLs~~Qi~YAA~DA~~~~~i~~~L~~  205 (206)
T d1vk0a_         174 EAKWE-KAGPEEQLEAAAIEGWLIVNVWDQLSD  205 (206)
T ss_dssp             HHTGG-GSCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             ecCCC-CcCCHHHHHHHHHHHHHHHHHHHHHhc
Confidence            79997 699999999999999999999999863
>d1yt3a3 c.55.3.5 (A:1-193) Ribonuclease D, catalytic domain {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d2hbka2 c.55.3.5 (A:129-420) Exosome complex exonuclease RRP6 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1kfsa1 c.55.3.5 (A:324-518) Exonuclease domain of prokaryotic DNA polymerase {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d2hhva1 c.55.3.5 (A:298-468) Exonuclease domain of prokaryotic DNA polymerase {Bacillus stearothermophilus, newly identified strain as yet unnamed [TaxId: 1422]} Back     information, alignment and structure
>d1wlja_ c.55.3.5 (A:) Interferon-stimulated gene 20 kDa protein, ISG20 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1x9ma1 c.55.3.5 (A:1-210) Exonuclease domain of T7 DNA polymerase {Bacteriophage T7 [TaxId: 10760]} Back     information, alignment and structure
>d1tgoa1 c.55.3.5 (A:1-347) Exonuclease domain of family B DNA polymerases {Archaeon Thermococcus gorgonarius [TaxId: 71997]} Back     information, alignment and structure
>d2guia1 c.55.3.5 (A:7-180) N-terminal exonuclease domain of the epsilon subunit of DNA polymerase III {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d3b6oa1 c.55.3.5 (A:9-234) Three prime repair exonuclease 1, TREX1 {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1qtma1 c.55.3.5 (A:293-422) Exonuclease domain of prokaryotic DNA polymerase {Thermus aquaticus [TaxId: 271]} Back     information, alignment and structure
>d1s5ja1 c.55.3.5 (A:40-449) Exonuclease domain of family B DNA polymerases {Sulfolobus solfataricus [TaxId: 2287]} Back     information, alignment and structure