Citrus Sinensis ID: 022051

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300---
MAAKKLSETFSKSLIEEVGRWGCMKQTGVSLRYMMEFGSKPTDKNLLISAQFLHKELPIRIARRAIELETLPYGLSEKPAVLKVRDWYLDSFRDLRSFPDIRSTSDERDFTQMIKAIKVRHNNVVPMMALGLQQLKKEMDPKIVYEDLDEIHQFLDRFYMSRIGIRMLIGQHVELHNPNPPPHCIGYIDTKMSPVQVARNASEHARCVCLREYGSAPDFNIYGDPSFTFPYVPSHLHLMVFELVKNSLRAVEERYMDSDKVAPPIRIIVADGLEDVTIKVLLLFMICLCISFGIFLFLSAFCC
cccccccHHHHHHHHHHHHHHHccccccccHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccHHHHHHHHHHHHHHcccccccccccHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHccHHHHHHHHHHHHccccccccccEEEEcccccHHHHHHHHHHHHHHHHHHHccccccEEEccccccccccccccHHHHHHHHHHHHHHHHHHHHHccccccccEEEEEEcccccEEEEEEcccccccccccccccccccccc
ccHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHcccccHHHHHHHHHHHHHHcHHHHHHHHHHHHHcccHHccccHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccEEEEEcccccHHHHHHHHHHHHHHHHHHHcccccEEEEEcccccEEEEcccHHHHHHHHHHHHHHHHHHHHHcccccccccEEEEEEcccccEEEEEEEEEHHHHHHHcEEEEEEEcccc
MAAKKLSETFSKSLIEEVgrwgcmkqtGVSLRYMMefgskptdknlLISAQFLHKELPIRIARRAIEletlpyglsekpaVLKVRDWYLDSfrdlrsfpdirstsdeRDFTQMIKAIKVRHNNVVPMMALGLQQLKkemdpkivYEDLDEIHQFLDRFYMSRIGIRMLIGQhvelhnpnppphcigyidtkmspvQVARNASEHARCVCLreygsapdfniygdpsftfpyvpshLHLMVFELVKNSLRAVEERYmdsdkvappiRIIVADGLEDVTIKVLLLFMICLCISFGIFLFLSAFCC
maakklseTFSKSlieevgrwgcmkQTGVSLRYMMEFGSKPTDKNLLISAQFLHKELPIRIARRAIELetlpyglsekpavLKVRDWYLDSfrdlrsfpdirstsderdFTQMIKAIKVRHNNVVPMMALGLQQLKKEMDPKIVYEDLDEIHQFLDRFYMSRIGIRMLIGQHVELHNPNPPPHCIGYIDTKMSPVQVARNASEHARCVCLREYGSAPDFNIYGDPSFTFPYVPSHLHLMVFELVKNSLRAVEERymdsdkvappIRIIVADGLEDVTIKVLLLFMICLCISFGIFLFLSAFCC
MAAKKLSETFSKSLIEEVGRWGCMKQTGVSLRYMMEFGSKPTDKNLLISAQFLHKELPIRIARRAIELETLPYGLSEKPAVLKVRDWYLDSFRDLRSFPDIRSTSDERDFTQMIKAIKVRHNNVVPMMALGLQQLKKEMDPKIVYEDLDEIHQFLDRFYMSRIGIRMLIGQHVELHNPNPPPHCIGYIDTKMSPVQVARNASEHARCVCLREYGSAPDFNIYGDPSFTFPYVPSHLHLMVFELVKNSLRAVEERYMDSDKVAPPIRIIVADGLEDVTIKVLLLFMICLCISFGIFLFLSAFCC
*************LIEEVGRWGCMKQTGVSLRYMMEFGSKPTDKNLLISAQFLHKELPIRIARRAIELETLPYGLSEKPAVLKVRDWYLDSFRDLRSFPDIR*****RDFTQMIKAIKVRHNNVVPMMALGLQQLKKEMDPKIVYEDLDEIHQFLDRFYMSRIGIRMLIGQHVELHNPNPPPHCIGYIDTKMSPVQVARNASEHARCVCLREYGSAPDFNIYGDPSFTFPYVPSHLHLMVFELVKNSLRAVEERYMDSDKVAPPIRIIVADGLEDVTIKVLLLFMICLCISFGIFLFLSAFC*
*************LIEEVGRWGCMKQTGVSLRYMMEFGSKPTDKNLLISAQFLHKELPIRIARRAIELETLPYGLSEKPAVLKVRDWYLDSFRDLRSFPDIRSTSDERDFTQMIKAIKVRHNNVVPMMALGLQQLKKEM******EDLDEIHQFLDRFYMSRIGIRMLIGQHVELHNPNPPPHCIGYIDTKMSPVQVARNASEHARCVCLREYGSAPDFNIYGDPSFTFPYVPSHLHLMVFELVKNSLRAVEERYMD*DKVAPPIRIIVADGLEDVTIKVLLLFMICLCISFGIFLFLSAFCC
********TFSKSLIEEVGRWGCMKQTGVSLRYMMEFGSKPTDKNLLISAQFLHKELPIRIARRAIELETLPYGLSEKPAVLKVRDWYLDSFRDLRSFPDIRSTSDERDFTQMIKAIKVRHNNVVPMMALGLQQLKKEMDPKIVYEDLDEIHQFLDRFYMSRIGIRMLIGQHVELHNPNPPPHCIGYIDTKMSPVQVARNASEHARCVCLREYGSAPDFNIYGDPSFTFPYVPSHLHLMVFELVKNSLRAVEERYMDSDKVAPPIRIIVADGLEDVTIKVLLLFMICLCISFGIFLFLSAFCC
***KKLSETFSKSLIEEVGRWGCMKQTGVSLRYMMEFGSKPTDKNLLISAQFLHKELPIRIARRAIELETLPYGLSEKPAVLKVRDWYLDSFRDLRSFPDIRSTSDERDFTQMIKAIKVRHNNVVPMMALGLQQLKKEMDPKIVYEDLDEIHQFLDRFYMSRIGIRMLIGQHVELHNPNPPPHCIGYIDTKMSPVQVARNASEHARCVCLREYGSAPDFNIYGDPSFTFPYVPSHLHLMVFELVKNSLRAVEERYMDSDKVAPPIRIIVADGLEDVTIKVLLLFMICLCISFGIFLFLSAFCC
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oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHi
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MAAKKLSETFSKSLIEEVGRWGCMKQTGVSLRYMMEFGSKPTDKNLLISAQFLHKELPIRIARRAIELETLPYGLSEKPAVLKVRDWYLDSFRDLRSFPDIRSTSDERDFTQMIKAIKVRHNNVVPMMALGLQQLKKEMDPKIVYEDLDEIHQFLDRFYMSRIGIRMLIGQHVELHNPNPPPHCIGYIDTKMSPVQVARNASEHARCVCLREYGSAPDFNIYGDPSFTFPYVPSHLHLMVFELVKNSLRAVEERYMDSDKVAPPIRIIVADGLEDVTIKVLLLFMICLCISFGIFLFLSAFCC
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query303 2.2.26 [Sep-21-2011]
Q9SBJ1366 [Pyruvate dehydrogenase ( yes no 0.910 0.754 0.803 1e-135
P91622413 [Pyruvate dehydrogenase [ yes no 0.821 0.602 0.368 5e-37
Q64536407 [Pyruvate dehydrogenase [ yes no 0.808 0.601 0.388 9e-36
Q9JK42407 [Pyruvate dehydrogenase [ yes no 0.808 0.601 0.381 1e-35
Q15119407 [Pyruvate dehydrogenase [ no no 0.808 0.601 0.373 3e-35
Q15120406 [Pyruvate dehydrogenase [ no no 0.848 0.633 0.364 3e-35
Q00972412 [3-methyl-2-oxobutanoate no no 0.877 0.645 0.311 3e-35
O14874412 [3-methyl-2-oxobutanoate no no 0.881 0.648 0.309 3e-35
Q2KJG8412 [3-methyl-2-oxobutanoate no no 0.877 0.645 0.311 9e-35
Q63065434 [Pyruvate dehydrogenase [ no no 0.801 0.559 0.370 1e-34
>sp|Q9SBJ1|PDK_ARATH [Pyruvate dehydrogenase (acetyl-transferring)] kinase, mitochondrial OS=Arabidopsis thaliana GN=PDK PE=1 SV=1 Back     alignment and function desciption
 Score =  482 bits (1240), Expect = e-135,   Method: Compositional matrix adjust.
 Identities = 225/280 (80%), Positives = 257/280 (91%), Gaps = 4/280 (1%)

Query: 1   MAAKKLSETFSKSLIEEVGRWGCMKQTGVSLRYMMEFGSKPTDKNLLISAQFLHKELPIR 60
           MA KK  E F KSLIE+V +WGCMKQTGVSLRYMMEFGSKPT++NLLISAQFLHKELPIR
Sbjct: 1   MAVKKACEMFPKSLIEDVHKWGCMKQTGVSLRYMMEFGSKPTERNLLISAQFLHKELPIR 60

Query: 61  IARRAIELETLPYGLSEKPAVLKVRDWYLDSFRDLRSFPDIRSTSDERDFTQMIKAIKVR 120
           +ARRAIEL+TLPYGLS+KPAVLKVRDWYL+SFRD+R+FP+I+ + DE+DFTQMIKA+KVR
Sbjct: 61  VARRAIELQTLPYGLSDKPAVLKVRDWYLESFRDMRAFPEIKDSGDEKDFTQMIKAVKVR 120

Query: 121 HNNVVPMMALGLQQLKKEMDPKIVYEDLDEIHQFLDRFYMSRIGIRMLIGQHVELHNPNP 180
           HNNVVPMMALG+ QLKK M+      +LDEIHQFLDRFY+SRIGIRMLIGQHVELHNPNP
Sbjct: 121 HNNVVPMMALGVNQLKKGMNSG----NLDEIHQFLDRFYLSRIGIRMLIGQHVELHNPNP 176

Query: 181 PPHCIGYIDTKMSPVQVARNASEHARCVCLREYGSAPDFNIYGDPSFTFPYVPSHLHLMV 240
           P H +GYI TKMSP++VARNASE AR +C REYGSAP+ NIYGDPSFTFPYVP+HLHLM+
Sbjct: 177 PLHTVGYIHTKMSPMEVARNASEDARSICFREYGSAPEINIYGDPSFTFPYVPTHLHLMM 236

Query: 241 FELVKNSLRAVEERYMDSDKVAPPIRIIVADGLEDVTIKV 280
           +ELVKNSLRAV+ER++DSD+VAPPIRIIVADG+EDVTIKV
Sbjct: 237 YELVKNSLRAVQERFVDSDRVAPPIRIIVADGIEDVTIKV 276
Serine protein kinase that inhibits the mitochondrial pyruvate dehydrogenase (PDH) complex (mtPDC) by phosphorylation of the E1 alpha subunit on Ser residues, thus contributing to the regulation of glucose metabolism.
Arabidopsis thaliana (taxid: 3702)
EC: 2EC: .EC: 7EC: .EC: 1EC: 1EC: .EC: 2
>sp|P91622|PDK_DROME [Pyruvate dehydrogenase [lipoamide]] kinase, mitochondrial OS=Drosophila melanogaster GN=Pdk PE=2 SV=2 Back     alignment and function description
>sp|Q64536|PDK2_RAT [Pyruvate dehydrogenase [lipoamide]] kinase isozyme 2, mitochondrial OS=Rattus norvegicus GN=Pdk2 PE=1 SV=1 Back     alignment and function description
>sp|Q9JK42|PDK2_MOUSE [Pyruvate dehydrogenase [lipoamide]] kinase isozyme 2, mitochondrial OS=Mus musculus GN=Pdk2 PE=1 SV=2 Back     alignment and function description
>sp|Q15119|PDK2_HUMAN [Pyruvate dehydrogenase [lipoamide]] kinase isozyme 2, mitochondrial OS=Homo sapiens GN=PDK2 PE=1 SV=2 Back     alignment and function description
>sp|Q15120|PDK3_HUMAN [Pyruvate dehydrogenase [lipoamide]] kinase isozyme 3, mitochondrial OS=Homo sapiens GN=PDK3 PE=1 SV=1 Back     alignment and function description
>sp|Q00972|BCKD_RAT [3-methyl-2-oxobutanoate dehydrogenase [lipoamide]] kinase, mitochondrial OS=Rattus norvegicus GN=Bckdk PE=1 SV=2 Back     alignment and function description
>sp|O14874|BCKD_HUMAN [3-methyl-2-oxobutanoate dehydrogenase [lipoamide]] kinase, mitochondrial OS=Homo sapiens GN=BCKDK PE=1 SV=2 Back     alignment and function description
>sp|Q2KJG8|BCKD_BOVIN [3-methyl-2-oxobutanoate dehydrogenase [lipoamide]] kinase, mitochondrial OS=Bos taurus GN=BCKDK PE=2 SV=1 Back     alignment and function description
>sp|Q63065|PDK1_RAT [Pyruvate dehydrogenase [lipoamide]] kinase isozyme 1, mitochondrial OS=Rattus norvegicus GN=Pdk1 PE=1 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query303
255556572351 pyruvate dehydrogenase, putative [Ricinu 0.924 0.797 0.867 1e-145
356556464369 PREDICTED: Pyruvate dehydrogenase [lipoa 0.924 0.758 0.875 1e-144
157922335369 mitochondrial pyruvate dehydrogenase kin 0.924 0.758 0.871 1e-143
359807389369 Pyruvate dehydrogenase [lipoamide] kinas 0.924 0.758 0.860 1e-143
255638678369 unknown [Glycine max] 0.924 0.758 0.871 1e-143
224106976369 predicted protein [Populus trichocarpa] 0.924 0.758 0.853 1e-143
388497260369 unknown [Lotus japonicus] 0.924 0.758 0.842 1e-139
225432171369 PREDICTED: [Pyruvate dehydrogenase [lipo 0.924 0.758 0.835 1e-138
449460345370 PREDICTED: Pyruvate dehydrogenase (acety 0.924 0.756 0.836 1e-137
45720178367 pyruvate dehydrogenase kinase [Cicer ari 0.900 0.743 0.842 1e-137
>gi|255556572|ref|XP_002519320.1| pyruvate dehydrogenase, putative [Ricinus communis] gi|223541635|gb|EEF43184.1| pyruvate dehydrogenase, putative [Ricinus communis] Back     alignment and taxonomy information
 Score =  521 bits (1343), Expect = e-145,   Method: Compositional matrix adjust.
 Identities = 243/280 (86%), Positives = 266/280 (95%)

Query: 1   MAAKKLSETFSKSLIEEVGRWGCMKQTGVSLRYMMEFGSKPTDKNLLISAQFLHKELPIR 60
           MAAKK  E+ SKS I+EV RWGCMKQTGVSLRYMMEFGS+PT KNLLISAQFLHKELPIR
Sbjct: 1   MAAKKAFESLSKSFIQEVQRWGCMKQTGVSLRYMMEFGSRPTSKNLLISAQFLHKELPIR 60

Query: 61  IARRAIELETLPYGLSEKPAVLKVRDWYLDSFRDLRSFPDIRSTSDERDFTQMIKAIKVR 120
           IARR I+L++LPYGLS+KPAVLKVRDWYLDSFRDLRSFPDI+ ++DE+DFTQMIKAIKVR
Sbjct: 61  IARRVIDLQSLPYGLSDKPAVLKVRDWYLDSFRDLRSFPDIKDSNDEKDFTQMIKAIKVR 120

Query: 121 HNNVVPMMALGLQQLKKEMDPKIVYEDLDEIHQFLDRFYMSRIGIRMLIGQHVELHNPNP 180
           HNNVVPMMALG+QQLKK MDPKIVYEDLDEIH FLDRFYMSRIGIRMLIGQHVELHNPNP
Sbjct: 121 HNNVVPMMALGVQQLKKGMDPKIVYEDLDEIHNFLDRFYMSRIGIRMLIGQHVELHNPNP 180

Query: 181 PPHCIGYIDTKMSPVQVARNASEHARCVCLREYGSAPDFNIYGDPSFTFPYVPSHLHLMV 240
           PPHCIGYI TKMSPV+VARNA+E AR +CLREYGSAP+ +IYGDPSFTFPYVP+HLHLMV
Sbjct: 181 PPHCIGYIHTKMSPVEVARNATEDARAICLREYGSAPNVSIYGDPSFTFPYVPAHLHLMV 240

Query: 241 FELVKNSLRAVEERYMDSDKVAPPIRIIVADGLEDVTIKV 280
           FELVKNSLRAV+ERYMDSDKVAPP+R+IVA+G+EDVTIKV
Sbjct: 241 FELVKNSLRAVQERYMDSDKVAPPVRLIVAEGIEDVTIKV 280

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|356556464|ref|XP_003546545.1| PREDICTED: Pyruvate dehydrogenase [lipoamide] kinase-like [Glycine max] gi|46850513|gb|AAT02656.1| mitochondrial pyruvate dehydrogenase kinase isoform 2 [Glycine max] Back     alignment and taxonomy information
>gi|157922335|gb|ABW03160.1| mitochondrial pyruvate dehydrogenase kinase isoform 2 [Pisum sativum] Back     alignment and taxonomy information
>gi|359807389|ref|NP_001241640.1| Pyruvate dehydrogenase [lipoamide] kinase-like [Glycine max] gi|46850511|gb|AAT02655.1| mitochondrial pyruvate dehydrogenase kinase isoform 1 [Glycine max] gi|157922331|gb|ABW03158.1| mitochondrial pyruvate dehydrogenase kinase isoform 1 [Pisum sativum] gi|157922333|gb|ABW03159.1| mitochondrial pyruvate dehydrogenase kinase isoform 1 [Pisum sativum] gi|157922339|gb|ABW03162.1| mitochondrial pyruvate dehydrogenase kinase isoform 1 [Cicer arietinum] gi|255639356|gb|ACU19974.1| unknown [Glycine max] Back     alignment and taxonomy information
>gi|255638678|gb|ACU19644.1| unknown [Glycine max] Back     alignment and taxonomy information
>gi|224106976|ref|XP_002314330.1| predicted protein [Populus trichocarpa] gi|222863370|gb|EEF00501.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|388497260|gb|AFK36696.1| unknown [Lotus japonicus] Back     alignment and taxonomy information
>gi|225432171|ref|XP_002267959.1| PREDICTED: [Pyruvate dehydrogenase [lipoamide]] kinase, mitochondrial [Vitis vinifera] gi|297736808|emb|CBI26009.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|449460345|ref|XP_004147906.1| PREDICTED: Pyruvate dehydrogenase (acetyl-transferring) kinase, mitochondrial-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|45720178|emb|CAG14980.1| pyruvate dehydrogenase kinase [Cicer arietinum] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query303
TAIR|locus:2081031366 PDK "AT3G06483" [Arabidopsis t 0.910 0.754 0.803 1.5e-122
ASPGD|ASPL0000007784405 AN6207 [Emericella nidulans (t 0.643 0.481 0.417 4.2e-49
POMBASE|SPAC644.11c425 pkp1 "mitochondrial pyruvate d 0.547 0.390 0.445 4.6e-42
ZFIN|ZDB-GENE-091204-402405 pdk1 "pyruvate dehydrogenase k 0.884 0.661 0.376 1.2e-40
FB|FBgn0017558413 Pdk "Pyruvate dehydrogenase ki 0.821 0.602 0.368 3.9e-37
UNIPROTKB|F1NLP2408 PDK1 "Uncharacterized protein" 0.851 0.632 0.373 1.3e-36
RGD|69428407 Pdk2 "pyruvate dehydrogenase k 0.808 0.601 0.388 1.3e-36
UNIPROTKB|E2RFY4 415 PDK3 "Uncharacterized protein" 0.844 0.616 0.366 2.7e-36
UNIPROTKB|F1LMM8407 Pdk2 "[Pyruvate dehydrogenase 0.808 0.601 0.384 2.7e-36
UNIPROTKB|Q15119407 PDK2 "[Pyruvate dehydrogenase 0.808 0.601 0.373 3.5e-36
TAIR|locus:2081031 PDK "AT3G06483" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1205 (429.2 bits), Expect = 1.5e-122, P = 1.5e-122
 Identities = 225/280 (80%), Positives = 257/280 (91%)

Query:     1 MAAKKLSETFSKSLIEEVGRWGCMKQTGVSLRYMMEFGSKPTDKNLLISAQFLHKELPIR 60
             MA KK  E F KSLIE+V +WGCMKQTGVSLRYMMEFGSKPT++NLLISAQFLHKELPIR
Sbjct:     1 MAVKKACEMFPKSLIEDVHKWGCMKQTGVSLRYMMEFGSKPTERNLLISAQFLHKELPIR 60

Query:    61 IARRAIELETLPYGLSEKPAVLKVRDWYLDSFRDLRSFPDIRSTSDERDFTQMIKAIKVR 120
             +ARRAIEL+TLPYGLS+KPAVLKVRDWYL+SFRD+R+FP+I+ + DE+DFTQMIKA+KVR
Sbjct:    61 VARRAIELQTLPYGLSDKPAVLKVRDWYLESFRDMRAFPEIKDSGDEKDFTQMIKAVKVR 120

Query:   121 HNNVVPMMALGLQQLKKEMDPKIVYEDLDEIHQFLDRFYMSRIGIRMLIGQHVELHNPNP 180
             HNNVVPMMALG+ QLKK M+      +LDEIHQFLDRFY+SRIGIRMLIGQHVELHNPNP
Sbjct:   121 HNNVVPMMALGVNQLKKGMNSG----NLDEIHQFLDRFYLSRIGIRMLIGQHVELHNPNP 176

Query:   181 PPHCIGYIDTKMSPVQVARNASEHARCVCLREYGSAPDFNIYGDPSFTFPYVPSHLHLMV 240
             P H +GYI TKMSP++VARNASE AR +C REYGSAP+ NIYGDPSFTFPYVP+HLHLM+
Sbjct:   177 PLHTVGYIHTKMSPMEVARNASEDARSICFREYGSAPEINIYGDPSFTFPYVPTHLHLMM 236

Query:   241 FELVKNSLRAVEERYMDSDKVAPPIRIIVADGLEDVTIKV 280
             +ELVKNSLRAV+ER++DSD+VAPPIRIIVADG+EDVTIKV
Sbjct:   237 YELVKNSLRAVQERFVDSDRVAPPIRIIVADGIEDVTIKV 276
GO:0005524 "ATP binding" evidence=ISS;IDA
GO:0005739 "mitochondrion" evidence=ISM;NAS
GO:0004740 "pyruvate dehydrogenase (acetyl-transferring) kinase activity" evidence=IMP
GO:0009927 "histidine phosphotransfer kinase activity" evidence=IDA
GO:0046777 "protein autophosphorylation" evidence=IDA
GO:0042803 "protein homodimerization activity" evidence=IPI
GO:0030003 "cellular cation homeostasis" evidence=RCA
GO:0070838 "divalent metal ion transport" evidence=RCA
ASPGD|ASPL0000007784 AN6207 [Emericella nidulans (taxid:162425)] Back     alignment and assigned GO terms
POMBASE|SPAC644.11c pkp1 "mitochondrial pyruvate dehydrogenase (lipoamide) kinase Pkp1 (predicted)" [Schizosaccharomyces pombe (taxid:4896)] Back     alignment and assigned GO terms
ZFIN|ZDB-GENE-091204-402 pdk1 "pyruvate dehydrogenase kinase, isozyme 1" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
FB|FBgn0017558 Pdk "Pyruvate dehydrogenase kinase" [Drosophila melanogaster (taxid:7227)] Back     alignment and assigned GO terms
UNIPROTKB|F1NLP2 PDK1 "Uncharacterized protein" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
RGD|69428 Pdk2 "pyruvate dehydrogenase kinase, isozyme 2" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
UNIPROTKB|E2RFY4 PDK3 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
UNIPROTKB|F1LMM8 Pdk2 "[Pyruvate dehydrogenase [lipoamide]] kinase isozyme 2, mitochondrial" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
UNIPROTKB|Q15119 PDK2 "[Pyruvate dehydrogenase [lipoamide]] kinase isozyme 2, mitochondrial" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q9SBJ1PDK_ARATH2, ., 7, ., 1, 1, ., 20.80350.91080.7540yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

Prediction LevelEC numberConfidence of Prediction
3rd Layer2.7.11LOW CONFIDENCE prediction!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query303
pfam10436163 pfam10436, BCDHK_Adom3, Mitochondrial branched-cha 6e-74
>gnl|CDD|220754 pfam10436, BCDHK_Adom3, Mitochondrial branched-chain alpha-ketoacid dehydrogenase kinase Back     alignment and domain information 
 Score =  224 bits (572), Expect = 6e-74
 Identities = 84/168 (50%), Positives = 111/168 (66%), Gaps = 9/168 (5%)

Query: 27  TGVSLRYMMEFGSKPTDKNLLISAQFLHKELPIRIARRAIELETLPYGLSEKPAVLKVRD 86
           T +SLR +++FG  PT+K LL SAQFL +ELP+R+A R  EL+ LPYGL   P++L+V +
Sbjct: 1   TPLSLRQLLQFGRNPTEKTLLKSAQFLREELPVRLAHRIRELQLLPYGLVANPSILQVYE 60

Query: 87  WYLDSFRDLRSFPDIRSTSDERDFTQMIKAIKVRHNNVVPMMALGLQQLKKEMDPKIVYE 146
           WYL SF +LRSFP  ++  D   F  +++ I  RHNNVVP +A G+ +LK  +DP     
Sbjct: 61  WYLQSFEELRSFPPPKTLEDNEKFCDLLRDILDRHNNVVPTLAQGVLELKDLLDP----V 116

Query: 147 DLDEIHQFLDRFYMSRIGIRMLIGQHVEL----HNPNPPPHCIGYIDT 190
             DEI  FLDRF  SRIGIRML  QH+ L    H+P  P + +G IDT
Sbjct: 117 PEDEIQYFLDRFLRSRIGIRMLAEQHLALTENTHSPKHPDY-VGIIDT 163

Catabolism and synthesis of leucine, isoleucine and valine are finely balanced, allowing the body to make the most of dietary input but removing excesses to prevent toxic build-up of their corresponding keto-acids. This is the butyryl-CoA dehydrogenase, subunit A domain 3, a largely alpha-helical bundle of the enzyme BCDHK. This enzyme is the regulator of the dehydrogenase complex that breaks branched-chain amino-acids down, by phosphorylating and thereby inactivating it when synthesis is required. The domain is associated with family HATPase_c pfam02518 which is towards the C-terminal. Length = 163

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 303
KOG0787414 consensus Dehydrogenase kinase [Signal transductio 100.0
PF10436164 BCDHK_Adom3: Mitochondrial branched-chain alpha-ke 100.0
PRK11100475 sensory histidine kinase CreC; Provisional 97.91
PF02518111 HATPase_c: Histidine kinase-, DNA gyrase B-, and H 97.6
TIGR02966333 phoR_proteo phosphate regulon sensor kinase PhoR. 97.49
TIGR02916679 PEP_his_kin putative PEP-CTERM system histidine ki 97.48
PRK10815485 sensor protein PhoQ; Provisional 97.33
PRK11006430 phoR phosphate regulon sensor protein; Provisional 97.27
PRK11091 779 aerobic respiration control sensor protein ArcB; P 97.16
TIGR02938494 nifL_nitrog nitrogen fixation negative regulator N 97.15
TIGR01386457 cztS_silS_copS heavy metal sensor kinase. Members 96.93
TIGR02956 968 TMAO_torS TMAO reductase sytem sensor TorS. This p 96.93
PRK10364457 sensor protein ZraS; Provisional 96.91
PRK10549466 signal transduction histidine-protein kinase BaeS; 96.85
TIGR03785703 marine_sort_HK proteobacterial dedicated sortase s 96.72
PRK11644495 sensory histidine kinase UhpB; Provisional 96.64
PRK11466 914 hybrid sensory histidine kinase TorS; Provisional 96.55
PRK10755356 sensor protein BasS/PmrB; Provisional 96.55
PRK11360607 sensory histidine kinase AtoS; Provisional 96.42
PRK09303380 adaptive-response sensory kinase; Validated 96.39
cd00075103 HATPase_c Histidine kinase-like ATPases; This fami 96.3
PRK13837 828 two-component VirA-like sensor kinase; Provisional 96.18
PRK15347 921 two component system sensor kinase SsrA; Provision 96.17
PRK13557 540 histidine kinase; Provisional 96.08
PRK10490895 sensor protein KdpD; Provisional 95.96
PRK10337449 sensor protein QseC; Provisional 95.94
PRK09470461 cpxA two-component sensor protein; Provisional 95.9
PRK09835482 sensor kinase CusS; Provisional 95.87
PRK11107 919 hybrid sensory histidine kinase BarA; Provisional 95.82
PRK10604433 sensor protein RstB; Provisional 95.8
PRK10600569 nitrate/nitrite sensor protein NarX; Provisional 95.75
COG0642336 BaeS Signal transduction histidine kinase [Signal 95.54
PRK09467435 envZ osmolarity sensor protein; Provisional 95.41
PRK10841 924 hybrid sensory kinase in two-component regulatory 95.38
PRK10618 894 phosphotransfer intermediate protein in two-compon 95.35
smart00387111 HATPase_c Histidine kinase-like ATPases. Histidine 95.31
PF13589137 HATPase_c_3: Histidine kinase-, DNA gyrase B-, and 95.17
PRK04069161 serine-protein kinase RsbW; Provisional 94.98
PRK11073348 glnL nitrogen regulation protein NR(II); Provision 94.91
COG4585365 Signal transduction histidine kinase [Signal trans 94.84
PRK13560807 hypothetical protein; Provisional 94.82
PRK09959 1197 hybrid sensory histidine kinase in two-component r 94.72
TIGR01925137 spIIAB anti-sigma F factor. This model describes t 94.68
COG4191603 Signal transduction histidine kinase regulating C4 94.62
PRK15053545 dpiB sensor histidine kinase DpiB; Provisional 94.39
PRK13559361 hypothetical protein; Provisional 94.38
PRK04184 535 DNA topoisomerase VI subunit B; Validated 94.35
TIGR01924159 rsbW_low_gc serine-protein kinase RsbW. This model 94.2
COG3290537 CitA Signal transduction histidine kinase regulati 94.14
PRK11086542 sensory histidine kinase DcuS; Provisional 94.1
TIGR01052 488 top6b DNA topoisomerase VI, B subunit. This model 93.96
PF13581125 HATPase_c_2: Histidine kinase-like ATPase domain 93.84
PRK14083 601 HSP90 family protein; Provisional 93.78
PRK14868 795 DNA topoisomerase VI subunit B; Provisional 93.67
COG1389 538 DNA topoisomerase VI, subunit B [DNA replication, 93.09
PRK10935565 nitrate/nitrite sensor protein NarQ; Provisional 92.95
PRK14867 659 DNA topoisomerase VI subunit B; Provisional 92.65
PRK03660146 anti-sigma F factor; Provisional 92.47
TIGR00585 312 mutl DNA mismatch repair protein MutL. All protein 89.89
PRK05559 631 DNA topoisomerase IV subunit B; Reviewed 88.86
COG5000712 NtrY Signal transduction histidine kinase involved 88.72
COG3850574 NarQ Signal transduction histidine kinase, nitrate 88.44
smart00433 594 TOP2c TopoisomeraseII. Eukaryotic DNA topoisomeras 87.46
PRK10547 670 chemotaxis protein CheA; Provisional 87.35
COG2172146 RsbW Anti-sigma regulatory factor (Ser/Thr protein 86.67
PRK05218 613 heat shock protein 90; Provisional 85.44
PRK14939 756 gyrB DNA gyrase subunit B; Provisional 84.67
PRK05644 638 gyrB DNA gyrase subunit B; Validated 84.36
COG2205890 KdpD Osmosensitive K+ channel histidine kinase [Si 83.43
TIGR01059 654 gyrB DNA gyrase, B subunit. This model describes t 82.5
COG5002459 VicK Signal transduction histidine kinase [Signal 81.8
>KOG0787 consensus Dehydrogenase kinase [Signal transduction mechanisms] Back     alignment and domain information 
Probab=100.00  E-value=3.5e-88  Score=639.92  Aligned_cols=274  Identities=39%  Similarity=0.628  Sum_probs=260.2

Q ss_pred             HHHHHHHHHhhCCCCCCCCHHHHHhcCCCCChHHHHHHHHHHHHhhHHHHHHHHHHHhcCCccccCCchHHHHHHHHHHH
Q 022051           12 KSLIEEVGRWGCMKQTGVSLRYMMEFGSKPTDKNLLISAQFLHKELPIRIARRAIELETLPYGLSEKPAVLKVRDWYLDS   91 (303)
Q Consensus        12 ~~l~~~I~~ya~~~~~plSL~~Ll~fG~~~~~~~ll~sa~fl~~ELPvRlA~ri~~l~~LP~~l~~nP~i~~V~~~Y~~S   91 (303)
                      +.+.++|+.||+++|+|+|++||++||.+++.....+|+.||++|||||||||+++|+.||+++++||||++|++||++|
T Consensus        36 ~~~~~~i~~~s~f~pspls~kq~l~fg~~~t~~~e~~S~~flr~ELpvRlA~~lkeiq~LP~nl~~npsi~~V~s~Y~~s  115 (414)
T KOG0787|consen   36 PSLPEYINPYSSFPPSPLSLKQFLDFGSDLTNACEKTSGIFLRQELPVRLANRLKEIQLLPFNLVNNPSIQLVQSWYIRS  115 (414)
T ss_pred             cchHHHhchhhcCCCCcccHHHHHHhcCCCCchhHHHHHHHHHHHHHHHHHHHHHHHhhCCHHhccCchHHHHHHHHHHH
Confidence            46899999999999999999999999998888888889999999999999999999999999999999999999999999


Q ss_pred             HHHhhcCCCCCC-chhHHHHHHHHHHHHHhcCCcHHHHHHHHHHHhhhcCCcccCCChHHHHHHHHHHHhhhhhHhhhHh
Q 022051           92 FRDLRSFPDIRS-TSDERDFTQMIKAIKVRHNNVVPMMALGLQQLKKEMDPKIVYEDLDEIHQFLDRFYMSRIGIRMLIG  170 (303)
Q Consensus        92 f~~l~~~p~i~~-~~~~~~F~~~L~~i~~~H~~vi~~lA~G~~E~k~~~~~~~~~~~~~~i~~FLD~f~~sRIsiRlL~~  170 (303)
                      |++|++||.+.+ +++..+|++.+..+++||++|+++||+|++|+|+..+ +  ....+.||+||||||+||||||||++
T Consensus       116 fe~ll~~~~~~~~~~~~~qf~d~l~~l~~rH~dvv~~lA~Gl~E~~~~~~-d--p~~~~~iqyFLdr~y~sRIsiRMLv~  192 (414)
T KOG0787|consen  116 FEDLLEFPTISPDLEDLSQFNDLLNTLRNRHNDVVPTLAQGLIEYREKDG-D--PVTEKNIQYFLDRFYMSRISIRMLVN  192 (414)
T ss_pred             HHHHHccCCCCcchhhHHHHHHHHHHHHhccchhHHHHHHHHHHHHHhcC-C--cchHHHHHHHHHHHHHHHHHHHHHHh
Confidence            999999999877 9999999999999999999999999999999999876 2  11256899999999999999999999


Q ss_pred             hhhhhcC-C-CCCCCcceEecCCCCHHHHHHHHHHHHHHHHHhhcCCCCceEEecCCCceee-ecCchHHHHHHHHHHHH
Q 022051          171 QHVELHN-P-NPPPHCIGYIDTKMSPVQVARNASEHARCVCLREYGSAPDFNIYGDPSFTFP-YVPSHLHLMVFELVKNS  247 (303)
Q Consensus       171 qHlaL~~-~-~~~~~~iGiI~~~~~~~~vv~~a~~~a~~lC~~~yg~~P~v~i~g~~d~~f~-yVPsHL~yIl~ELlKNA  247 (303)
                      ||++|++ + ..+++|||+||++|++.++|++|+|+|+++|+++|+.+|+++|+|+++.+|. |||+||+||||||||||
T Consensus       193 qh~~l~~~~kp~~~~~iG~I~~~c~v~~vi~~a~e~ar~lCd~yy~~sPel~i~~~~a~~~~vyvPshL~ymlfElfKNa  272 (414)
T KOG0787|consen  193 QHLLLFASGKPDHPRHIGIIDPRCSVKKVIKDASENARFLCDQYYLNSPELIIEGHNALSFTVYVPSHLYYMLFELFKNA  272 (414)
T ss_pred             hhhheecCCCCCCcceeeeeCCCCCHHHHHHHHHHHHHHHHHHhccCCCeeEecCcccccCccccchHHHHHHHHHHHHH
Confidence            9999998 3 2346799999999999999999999999999999999999999999999999 99999999999999999


Q ss_pred             HHHHHHHhcCCCCCCCCeEEEEecCCCeEEEEEeecCcchh
Q 022051          248 LRAVEERYMDSDKVAPPIRIIVADGLEDVTIKVLLLFMICL  288 (303)
Q Consensus       248 mRAtvE~h~~~~~~lPPI~V~I~~g~edvtIkISD~g~~~~  288 (303)
                      ||||||+|++++.++|||+|+|++|+||++|||||+|||..
T Consensus       273 mrATve~h~~~~~~~ppI~V~V~~gdeDl~ikISDrGGGV~  313 (414)
T KOG0787|consen  273 MRATVEHHGDDGDELPPIKVTVAKGDEDLLIKISDRGGGVP  313 (414)
T ss_pred             HHHHHHHhccCCCCCCCeEEEEecCCcceEEEEecCCCCcC
Confidence            99999999999877999999999999999999999999975

>PF10436 BCDHK_Adom3: Mitochondrial branched-chain alpha-ketoacid dehydrogenase kinase; InterPro: IPR018955 Catabolism and synthesis of leucine, isoleucine and valine are finely balanced, allowing the body to make the most of dietary input but removing excesses to prevent toxic build-up of their corresponding keto-acids Back     alignment and domain information
>PRK11100 sensory histidine kinase CreC; Provisional Back     alignment and domain information
>PF02518 HATPase_c: Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; InterPro: IPR003594 This domain is found in several ATP-binding proteins for example: histidine kinase, DNA gyrase B, topoisomerases [], heat shock protein HSP90 [, , ], phytochrome-like ATPases and DNA mismatch repair proteins Back     alignment and domain information
>TIGR02966 phoR_proteo phosphate regulon sensor kinase PhoR Back     alignment and domain information
>TIGR02916 PEP_his_kin putative PEP-CTERM system histidine kinase Back     alignment and domain information
>PRK10815 sensor protein PhoQ; Provisional Back     alignment and domain information
>PRK11006 phoR phosphate regulon sensor protein; Provisional Back     alignment and domain information
>PRK11091 aerobic respiration control sensor protein ArcB; Provisional Back     alignment and domain information
>TIGR02938 nifL_nitrog nitrogen fixation negative regulator NifL Back     alignment and domain information
>TIGR01386 cztS_silS_copS heavy metal sensor kinase Back     alignment and domain information
>TIGR02956 TMAO_torS TMAO reductase sytem sensor TorS Back     alignment and domain information
>PRK10364 sensor protein ZraS; Provisional Back     alignment and domain information
>PRK10549 signal transduction histidine-protein kinase BaeS; Provisional Back     alignment and domain information
>TIGR03785 marine_sort_HK proteobacterial dedicated sortase system histidine kinase Back     alignment and domain information
>PRK11644 sensory histidine kinase UhpB; Provisional Back     alignment and domain information
>PRK11466 hybrid sensory histidine kinase TorS; Provisional Back     alignment and domain information
>PRK10755 sensor protein BasS/PmrB; Provisional Back     alignment and domain information
>PRK11360 sensory histidine kinase AtoS; Provisional Back     alignment and domain information
>PRK09303 adaptive-response sensory kinase; Validated Back     alignment and domain information
>cd00075 HATPase_c Histidine kinase-like ATPases; This family includes several ATP-binding proteins for example: histidine kinase, DNA gyrase B, topoisomerases, heat shock protein HSP90, phytochrome-like ATPases and DNA mismatch repair proteins Back     alignment and domain information
>PRK13837 two-component VirA-like sensor kinase; Provisional Back     alignment and domain information
>PRK15347 two component system sensor kinase SsrA; Provisional Back     alignment and domain information
>PRK13557 histidine kinase; Provisional Back     alignment and domain information
>PRK10490 sensor protein KdpD; Provisional Back     alignment and domain information
>PRK10337 sensor protein QseC; Provisional Back     alignment and domain information
>PRK09470 cpxA two-component sensor protein; Provisional Back     alignment and domain information
>PRK09835 sensor kinase CusS; Provisional Back     alignment and domain information
>PRK11107 hybrid sensory histidine kinase BarA; Provisional Back     alignment and domain information
>PRK10604 sensor protein RstB; Provisional Back     alignment and domain information
>PRK10600 nitrate/nitrite sensor protein NarX; Provisional Back     alignment and domain information
>COG0642 BaeS Signal transduction histidine kinase [Signal transduction mechanisms] Back     alignment and domain information
>PRK09467 envZ osmolarity sensor protein; Provisional Back     alignment and domain information
>PRK10841 hybrid sensory kinase in two-component regulatory system with RcsB and YojN; Provisional Back     alignment and domain information
>PRK10618 phosphotransfer intermediate protein in two-component regulatory system with RcsBC; Provisional Back     alignment and domain information
>smart00387 HATPase_c Histidine kinase-like ATPases Back     alignment and domain information
>PF13589 HATPase_c_3: Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; PDB: 3IED_A 2XCM_B 2JKI_B 3OPD_A 2O1V_B 2GQP_A 2O1W_C 1YT2_A 1TC6_A 2H8M_B Back     alignment and domain information
>PRK04069 serine-protein kinase RsbW; Provisional Back     alignment and domain information
>PRK11073 glnL nitrogen regulation protein NR(II); Provisional Back     alignment and domain information
>COG4585 Signal transduction histidine kinase [Signal transduction mechanisms] Back     alignment and domain information
>PRK13560 hypothetical protein; Provisional Back     alignment and domain information
>PRK09959 hybrid sensory histidine kinase in two-component regulatory system with EvgA; Provisional Back     alignment and domain information
>TIGR01925 spIIAB anti-sigma F factor Back     alignment and domain information
>COG4191 Signal transduction histidine kinase regulating C4-dicarboxylate transport system [Signal transduction mechanisms] Back     alignment and domain information
>PRK15053 dpiB sensor histidine kinase DpiB; Provisional Back     alignment and domain information
>PRK13559 hypothetical protein; Provisional Back     alignment and domain information
>PRK04184 DNA topoisomerase VI subunit B; Validated Back     alignment and domain information
>TIGR01924 rsbW_low_gc serine-protein kinase RsbW Back     alignment and domain information
>COG3290 CitA Signal transduction histidine kinase regulating citrate/malate metabolism [Signal transduction mechanisms] Back     alignment and domain information
>PRK11086 sensory histidine kinase DcuS; Provisional Back     alignment and domain information
>TIGR01052 top6b DNA topoisomerase VI, B subunit Back     alignment and domain information
>PF13581 HATPase_c_2: Histidine kinase-like ATPase domain Back     alignment and domain information
>PRK14083 HSP90 family protein; Provisional Back     alignment and domain information
>PRK14868 DNA topoisomerase VI subunit B; Provisional Back     alignment and domain information
>COG1389 DNA topoisomerase VI, subunit B [DNA replication, recombination, and repair] Back     alignment and domain information
>PRK10935 nitrate/nitrite sensor protein NarQ; Provisional Back     alignment and domain information
>PRK14867 DNA topoisomerase VI subunit B; Provisional Back     alignment and domain information
>PRK03660 anti-sigma F factor; Provisional Back     alignment and domain information
>TIGR00585 mutl DNA mismatch repair protein MutL Back     alignment and domain information
>PRK05559 DNA topoisomerase IV subunit B; Reviewed Back     alignment and domain information
>COG5000 NtrY Signal transduction histidine kinase involved in nitrogen fixation and metabolism regulation [Signal transduction mechanisms] Back     alignment and domain information
>COG3850 NarQ Signal transduction histidine kinase, nitrate/nitrite-specific [Signal transduction mechanisms] Back     alignment and domain information
>smart00433 TOP2c TopoisomeraseII Back     alignment and domain information
>PRK10547 chemotaxis protein CheA; Provisional Back     alignment and domain information
>COG2172 RsbW Anti-sigma regulatory factor (Ser/Thr protein kinase) [Signal transduction mechanisms] Back     alignment and domain information
>PRK05218 heat shock protein 90; Provisional Back     alignment and domain information
>PRK14939 gyrB DNA gyrase subunit B; Provisional Back     alignment and domain information
>PRK05644 gyrB DNA gyrase subunit B; Validated Back     alignment and domain information
>COG2205 KdpD Osmosensitive K+ channel histidine kinase [Signal transduction mechanisms] Back     alignment and domain information
>TIGR01059 gyrB DNA gyrase, B subunit Back     alignment and domain information
>COG5002 VicK Signal transduction histidine kinase [Signal transduction mechanisms] Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query303
1jm6_A407 Pyruvate Dehydrogenase Kinase, Isozyme 2, Containin 7e-37
3tz0_A418 Crystal Structure Of Branched-Chain Alpha-Ketoacid 2e-36
1y8n_A419 Crystal Structure Of The Pdk3-L2 Complex Length = 4 2e-36
2btz_A394 Crystal Structures Of Human Pyruvate Dehydrogenase 2e-36
1gjv_A388 Branched-chain Alpha-ketoacid Dehydrogenase Kinase 3e-36
3vad_A418 Crystal Structure Of I170f Mutant Branched-chain Al 6e-36
2zkj_A394 Crystal Structure Of Human Pdk4-Adp Complex Length 1e-35
2e0a_A394 Crystal Structure Of Human Pyruvate Dehydrogenase K 2e-35
2q8f_A407 Structure Of Pyruvate Dehydrogenase Kinase Isoform 1e-34
>pdb|1JM6|A Chain A, Pyruvate Dehydrogenase Kinase, Isozyme 2, Containing Adp Length = 407 Back     alignment and structure 
Iteration: 1

 Score =  150 bits (380), Expect = 7e-37,   Method: Compositional matrix adjust.
 Identities = 103/265 (38%), Positives = 146/265 (55%), Gaps = 20/265 (7%)
Query: 29  VSLRYMMEFGSKPTDKNLLISAQFLHKELPIRIARRAIELETLPYGLSEKPAVLKVRDWY 88
           +S++  ++FGS    +    S  FL +ELP+R+A    E+  LP  +   P+V  V+ WY
Sbjct: 31  LSMKQFLDFGSSNACEK--TSFTFLRQELPVRLANIMKEINLLPDRVLSTPSVQLVQSWY 88
Query: 89  LDSFRDLRSFPDIRSTSDERDFTQMIKA---IKVRHNNVVPMMALGLQQLKKEMDPKIVY 145
           + S  D+  F D +   D R  +Q   A   I+ RHN+VVP MA G+ + K       V 
Sbjct: 89  VQSLLDIMEFLD-KDPEDHRTLSQFTDALVTIRNRHNDVVPTMAQGVLEYKDTYGDDPVS 147
Query: 146 EDLDEIHQFLDRFYMSRIGIRMLIGQHVEL----HNPNPPPHCIGYIDTKMSPVQVARNA 201
                I  FLDRFY+SRI IRMLI QH  +     NP  P H IG ID   S   V ++A
Sbjct: 148 N--QNIQYFLDRFYLSRISIRMLINQHTLIFDGSTNPAHPKH-IGSIDPNCSVSDVVKDA 204
Query: 202 SEHARCVCLREYGSAPDFNIY--GDPSFTFP----YVPSHLHLMVFELVKNSLRAVEERY 255
            + A+ +C + Y ++PD  I      + T P    YVPSHL+ M+FEL KN++RA  E +
Sbjct: 205 YDMAKLLCDKYYMASPDLEIQEVNATNATQPIHMVYVPSHLYHMLFELFKNAMRATVESH 264
Query: 256 MDSDKVAPPIRIIVADGLEDVTIKV 280
            +S    PPI+I+VA G ED++IK+
Sbjct: 265 -ESSLTLPPIKIMVALGEEDLSIKM 288
>pdb|3TZ0|A Chain A, Crystal Structure Of Branched-Chain Alpha-Ketoacid Dehydrogenase KinaseS-Alpha-Chloroisocaproate Complex Length = 418 Back     alignment and structure
>pdb|1Y8N|A Chain A, Crystal Structure Of The Pdk3-L2 Complex Length = 419 Back     alignment and structure
>pdb|2BTZ|A Chain A, Crystal Structures Of Human Pyruvate Dehydrogenase Kinase 2 Containing Physiological And Synthetic Ligands Length = 394 Back     alignment and structure
>pdb|1GJV|A Chain A, Branched-chain Alpha-ketoacid Dehydrogenase Kinase (bck) Complxed With Atp-gamma-s Length = 388 Back     alignment and structure
>pdb|3VAD|A Chain A, Crystal Structure Of I170f Mutant Branched-chain Alpha-ketoacid Dehydrogenase Kinase In Complex With 3,6-dichlorobenzo[b]thiophene-2- Carboxylic Acid Length = 418 Back     alignment and structure
>pdb|2ZKJ|A Chain A, Crystal Structure Of Human Pdk4-Adp Complex Length = 394 Back     alignment and structure
>pdb|2E0A|A Chain A, Crystal Structure Of Human Pyruvate Dehydrogenase Kinase 4 In Complex With Amppnp Length = 394 Back     alignment and structure
>pdb|2Q8F|A Chain A, Structure Of Pyruvate Dehydrogenase Kinase Isoform 1 Length = 407 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query303
1gkz_A388 [3-methyl-2-oxobutanoate dehydrogenase [lipoamide] 1e-87
1y8o_A419 [pyruvate dehydrogenase [lipoamide]] kinase isozy; 2e-76
2btz_A394 Pyruvate dehydrogenase kinase isoenzyme 2; GHKL mo 3e-73
2q8g_A407 [pyruvate dehydrogenase [lipoamide]] kinase isozy; 8e-72
2e0a_A394 Pyruvate dehydrogenase kinase isozyme 4; PDK4, ATP 1e-71
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 8e-05
>1gkz_A [3-methyl-2-oxobutanoate dehydrogenase [lipoamide]] kinase; transferase, mitochondrial protein kinase, potassium; HET: ADP; 2.2A {Rattus norvegicus} SCOP: a.29.5.1 d.122.1.4 PDB: 1gjv_A 1gkx_A* Length = 388 Back     alignment and structure
 Score =  266 bits (681), Expect = 1e-87
 Identities = 82/278 (29%), Positives = 151/278 (54%), Gaps = 11/278 (3%)

Query: 3   AKKLSETFSKSLIEEVGRWGCMKQTGVSLRYMMEFGSKPTDKNLLISAQFLHKELPIRIA 62
           +K ++  +++S I+            ++   M+  G      +LL S ++L +ELP+RIA
Sbjct: 17  SKTVTSFYNQSAID---VVAEKPSVRLTPTMMLYSGRSQDGSHLLKSGRYLQQELPVRIA 73

Query: 63  RRAIELETLPYGLSEKPAVLKVRDWYLDSFRDLRSFPDIRSTSDERDFTQMIKAIKVRHN 122
            R     +LP+ +   P +L V + Y+ +F+ L  FP I+  +DE  + Q+++ +   H 
Sbjct: 74  HRIKGFRSLPFIIGCNPTILHVHELYIRAFQKLTDFPPIKDQADEAQYCQLVRQLLDDHK 133

Query: 123 NVVPMMALGLQQLKKEMDPKIVYEDLDEIHQFLDRFYMSRIGIRMLIGQHVELHNPNPPP 182
           +VV ++A GL++ +K ++ +        +  FLD+   SR+GIRML   H+ LH     P
Sbjct: 134 DVVTLLAEGLRESRKHIEDE------KLVRYFLDKTLTSRLGIRMLATHHLALH--EDKP 185

Query: 183 HCIGYIDTKMSPVQVARNASEHARCVCLREYGSAPDFNIYGDPSFTFPYVPSHLHLMVFE 242
             +G I T++SP ++     + AR +C  +YG+AP   I G  +  FP++P  L  ++ E
Sbjct: 186 DFVGIICTRLSPKKIIEKWVDFARRLCEHKYGNAPRVRINGHVAARFPFIPMPLDYILPE 245

Query: 243 LVKNSLRAVEERYMDSDKVAPPIRIIVADGLEDVTIKV 280
           L+KN++RA  E ++D+    P + I +A+   D+ I++
Sbjct: 246 LLKNAMRATMESHLDTPYNVPDVVITIANNDVDLIIRI 283
>1y8o_A [pyruvate dehydrogenase [lipoamide]] kinase isozy; pyruvate dehydrogenase kinase 3, lipoyl-bearing domain; HET: RED ADP; 2.48A {Homo sapiens} SCOP: a.29.5.1 d.122.1.4 PDB: 1y8n_A* 1y8p_A* 2pnr_A* 2q8i_A* Length = 419 Back     alignment and structure
>2btz_A Pyruvate dehydrogenase kinase isoenzyme 2; GHKL motif regulation, transferase; 2.2A {Homo sapiens} PDB: 2bu2_A* 2bu5_A* 2bu6_A* 2bu7_A* 2bu8_A* 3crk_A* 1jm6_A* 3crl_A* Length = 394 Back     alignment and structure
>2q8g_A [pyruvate dehydrogenase [lipoamide]] kinase isozy; GHKL ATPase/kinase family, pyruvate dehydrogenase complex, mitochondrial kinase; HET: AZX; 1.90A {Homo sapiens} PDB: 2q8f_A* 2q8h_A Length = 407 Back     alignment and structure
>2e0a_A Pyruvate dehydrogenase kinase isozyme 4; PDK4, ATP-binding, structural genomics, NPPSFA, NATI project on protein structural and functional analyses; HET: ANP; 1.86A {Homo sapiens} PDB: 2zdx_A* 2zdy_A* 2zkj_A* 3d2r_A* Length = 394 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query303
1gkz_A388 [3-methyl-2-oxobutanoate dehydrogenase [lipoamide] 100.0
2e0a_A394 Pyruvate dehydrogenase kinase isozyme 4; PDK4, ATP 100.0
2q8g_A407 [pyruvate dehydrogenase [lipoamide]] kinase isozy; 100.0
2btz_A394 Pyruvate dehydrogenase kinase isoenzyme 2; GHKL mo 100.0
1y8o_A419 [pyruvate dehydrogenase [lipoamide]] kinase isozy; 100.0
1i58_A189 Chemotaxis protein CHEA; beta-alpha sandwich, sign 97.77
1ysr_A150 Sensor-type histidine kinase PRRB; ATP-binding dom 97.74
3a0y_A152 Sensor protein; ATP-LID, kinase, phosphoprotein, t 97.7
1id0_A152 PHOQ histidine kinase; PHOQ/PHOP, signal transduct 97.69
4ew8_A268 Sensor protein DIVL; signal transduction, two-comp 97.59
2c2a_A258 Sensor histidine kinase; phosphotransfer, PHOQ, se 97.54
3zxq_A124 Hypoxia sensor histidine kinase response regulato; 97.5
3a0r_A349 Sensor protein; four helix bundle, PAS fold, kinas 97.45
3zxo_A129 Redox sensor histidine kinase response regulator; 97.44
3d36_A244 Sporulation kinase B; GHKL ATPase, four helix bund 97.4
3ehh_A218 Sensor kinase (YOCF protein); four-helix bundle, G 97.39
1bxd_A161 ENVZ(290-450), protein (osmolarity sensor protein 97.38
3ehg_A128 Sensor kinase (YOCF protein); GHL ATPase domain, t 97.34
1r62_A160 Nitrogen regulation protein NR(II); PII, histidine 97.26
3sl2_A177 Sensor histidine kinase YYCG; ATP binding, intact 96.83
1b3q_A 379 Protein (chemotaxis protein CHEA); histine kinase, 96.29
3jz3_A222 Sensor protein QSEC; helix-turn-helix, kinase doma 96.15
1th8_A145 Anti-sigma F factor; SPOIIAB, SPOIIAA, anti-ANTI-s 95.96
1mu5_A 471 Type II DNA topoisomerase VI subunit B; GHKL ATPas 95.32
3fv5_A 201 DNA topoisomerase 4 subunit B; topoisomerase IV B 95.19
2zbk_B 530 Type 2 DNA topoisomerase 6 subunit B; DNA binding 95.09
4duh_A 220 DNA gyrase subunit B; structure-based drug design, 94.99
3ttz_A 198 DNA gyrase subunit B; protein-inhibitor complex, A 94.94
2wer_A 220 ATP-dependent molecular chaperone HSP82; ATPase, A 94.87
2q2e_B 621 Type 2 DNA topoisomerase 6 subunit B; DNA-binding, 94.59
3cwv_A 369 DNA gyrase, B subunit, truncated; structural genom 94.17
3t0h_A 228 Heat shock protein HSP 90-alpha; chaperone, ATPase 93.99
1zxm_A 400 TOPO IIA ATPase, DNA topoisomerase II, alpha isozy 93.79
1ei1_A 391 DNA gyrase B, GYRB; ATPase domain, dimer, isomeras 93.73
4emv_A 226 DNA topoisomerase IV, B subunit; protein-inhibitor 93.63
2gqp_A 236 Endoplasmin; GRP94, HSP82, HSP90, HTPG, chaperone, 93.41
4fpp_A247 Phosphotransferase; four helix bundle, bergerat fo 92.93
2ior_A 235 Chaperone protein HTPG; heat shock protein, HSP90; 92.92
1qy5_A 269 Endoplasmin; GRP94, NECA, HSP90, chaperone; HET: N 92.9
3o0i_A 256 HSP90AA1 protein; HSP90 heat-shock proteins, chape 92.21
1yc1_A 264 HSP 86, heat shock protein HSP 90-alpha; cell-cycl 91.99
3na3_A 348 DNA mismatch repair protein MLH1; MUTL protein hom 91.89
1s16_A 390 Topoisomerase IV subunit B; two-domain protein com 91.89
3nmq_A 239 Heat shock protein HSP 90-beta; ATPase, chaperone- 91.76
3h4l_A 367 DNA mismatch repair protein PMS1; ATP binding, DNA 91.67
1h7s_A 365 PMS1 protein homolog 2; DNA repair, GHL ATPase, mi 91.63
3peh_A 281 Endoplasmin homolog; structural genomics, structur 91.02
3lnu_A 408 Topoisomerase IV subunit B; PARE, ATP-binding, nuc 90.65
1b63_A 333 MUTL; DNA mismatch repair, ATPase; HET: ANP; 1.90A 90.34
1kij_A 390 DNA gyrase subunit B; topoisomerase, gyrase B-coum 90.32
1pvg_A 418 DNA topoisomerase II; GHKL ATPase domain; HET: DNA 90.01
1y4s_A 559 Chaperone protein HTPG; HSP90, molecular chaperone 86.87
3ke6_A399 Protein RV1364C/MT1410; anti-sigma factor, anti-si 84.98
2ioq_A 624 Chaperone protein HTPG; heat shock protein, HSP90; 84.87
2o1u_A 666 Endoplasmin; GRP94, HSP82, HSP90, HTPG, chaperone, 83.69
1ixm_A192 SPO0B, protein (sporulation response regulatory pr 82.72
2cg9_A 677 ATP-dependent molecular chaperone HSP82; chaperone 82.06
>1gkz_A [3-methyl-2-oxobutanoate dehydrogenase [lipoamide]] kinase; transferase, mitochondrial protein kinase, potassium; HET: ADP; 2.2A {Rattus norvegicus} SCOP: a.29.5.1 d.122.1.4 PDB: 1gjv_A 1gkx_A* Back     alignment and structure
Probab=100.00  E-value=7.5e-46  Score=356.10  Aligned_cols=265  Identities=30%  Similarity=0.541  Sum_probs=240.7

Q ss_pred             HHHHHhhCCCCCCCCHHHHHhcCCCCChHHHHHHHHHHHHhhHHHHHHHHHHHhcCCccccCCchHHHHHHHHHHHHHHh
Q 022051           16 EEVGRWGCMKQTGVSLRYMMEFGSKPTDKNLLISAQFLHKELPIRIARRAIELETLPYGLSEKPAVLKVRDWYLDSFRDL   95 (303)
Q Consensus        16 ~~I~~ya~~~~~plSL~~Ll~fG~~~~~~~ll~sa~fl~~ELPvRlA~ri~~l~~LP~~l~~nP~i~~V~~~Y~~Sf~~l   95 (303)
                      ..|++||+++++|+||+||++||++++..+++++++|+++|||+|+|+|+++++.||+++..||++.++++||.++|+++
T Consensus        27 ~~i~~~~~~~~~~~sl~~l~~~g~~~~~~~ll~s~~~l~~elp~rla~ri~~l~~lp~~~~~~~~i~~~~~~~~~~~~~l  106 (388)
T 1gkz_A           27 SAIDVVAEKPSVRLTPTMMLYSGRSQDGSHLLKSGRYLQQELPVRIAHRIKGFRSLPFIIGCNPTILHVHELYIRAFQKL  106 (388)
T ss_dssp             -----------CEESSSCEECCCCCTTTTHHHHHHHHHHHHHHHHHHHHHHHHHTSCHHHHTSHHHHHHHHHHHHHHHHH
T ss_pred             hHHHHHHcCCCCCcCHHHHHHhCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHhhhcCchHHHHHHHHHHHHHHH
Confidence            47899999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hcCCCCCCchhHHHHHHHHHHHHHhcCCcHHHHHHHHHHHhhhcCCcccCCChHHHHHHHHHHHhhhhhHhhhHhhhhhh
Q 022051           96 RSFPDIRSTSDERDFTQMIKAIKVRHNNVVPMMALGLQQLKKEMDPKIVYEDLDEIHQFLDRFYMSRIGIRMLIGQHVEL  175 (303)
Q Consensus        96 ~~~p~i~~~~~~~~F~~~L~~i~~~H~~vi~~lA~G~~E~k~~~~~~~~~~~~~~i~~FLD~f~~sRIsiRlL~~qHlaL  175 (303)
                      +.++.+++.+++.+|+++++.+..+|.+.+..|+.|+.|+.+...      +.+.+++|||+++.+++++|.|+++|+.+
T Consensus       107 ~~~~~~~~~~~~~~~~~~l~~i~helrtpL~~i~~g~~~l~~~~~------~~~~~~~~l~~i~~~~~~l~~li~~ll~l  180 (388)
T 1gkz_A          107 TDFPPIKDQADEAQYCQLVRQLLDDHKDVVTLLAEGLRESRKHIE------DEKLVRYFLDKTLTSRLGIRMLATHHLAL  180 (388)
T ss_dssp             HHSCCCCSHHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHSSSSCC------STTHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred             HhCcCCCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhcc------CcHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            999999999999999999999999999999999999999987543      23579999999999999999999999999


Q ss_pred             cCCCCCCCcceEecCCCCHHHHHHHHHHHHHHHHHhhcCCCCceEEecCCCceeeecCchHHHHHHHHHHHHHHHHHHHh
Q 022051          176 HNPNPPPHCIGYIDTKMSPVQVARNASEHARCVCLREYGSAPDFNIYGDPSFTFPYVPSHLHLMVFELVKNSLRAVEERY  255 (303)
Q Consensus       176 ~~~~~~~~~iGiI~~~~~~~~vv~~a~~~a~~lC~~~yg~~P~v~i~g~~d~~f~yVPsHL~yIl~ELlKNAmRAtvE~h  255 (303)
                      +..  .++.+|++...|++.++++++++.++..|..+||..|++++.++.+..++++|.||++|+.+|++||+|||.+.+
T Consensus       181 ~~~--~~~~~~~~~~~~~l~~li~~~~~~~~~~~~~~~g~~~~i~i~~~~~~~~~~~~~~L~~il~NLl~NAik~~~~~~  258 (388)
T 1gkz_A          181 HED--KPDFVGIICTRLSPKKIIEKWVDFARRLCEHKYGNAPRVRINGHVAARFPFIPMPLDYILPELLKNAMRATMESH  258 (388)
T ss_dssp             TSC--CTTEETTEEEEECHHHHHHHHHHHHHHHHHHHHSCCCCEEEEESTTCCEEECCHHHHHHHHHHHHHHHHHHHHTC
T ss_pred             hcc--CCCccceecCCCCHHHHHHHHHHHHHHHHHHhcCCCCcEEEEccCCCceeecHHHHHHHHHHHHHHHHHHhhccc
Confidence            866  367899999999999999999999999999999999999999999999999999999999999999999999987


Q ss_pred             cCCCCCCCCeEEEEecCCCeEEEEEeecCcchh
Q 022051          256 MDSDKVAPPIRIIVADGLEDVTIKVLLLFMICL  288 (303)
Q Consensus       256 ~~~~~~lPPI~V~I~~g~edvtIkISD~g~~~~  288 (303)
                      .......|+|+|++..++++++|+|+|+|.|..
T Consensus       259 ~~~~~~~~~I~I~~~~~~~~v~i~V~D~G~GI~  291 (388)
T 1gkz_A          259 LDTPYNVPDVVITIANNDVDLIIRISDRGGGIA  291 (388)
T ss_dssp             TTCTTSCCCEEEEEEECSSEEEEEEECCSCCCC
T ss_pred             cCCCCCCCCEEEEEEeCCCEEEEEEEEeCCCcC
Confidence            655566899999999999999999999999963
>2e0a_A Pyruvate dehydrogenase kinase isozyme 4; PDK4, ATP-binding, structural genomics, NPPSFA, NATI project on protein structural and functional analyses; HET: ANP; 1.86A {Homo sapiens} PDB: 2zdx_A* 2zdy_A* 2zkj_A* 3d2r_A* Back     alignment and structure
>2q8g_A [pyruvate dehydrogenase [lipoamide]] kinase isozy; GHKL ATPase/kinase family, pyruvate dehydrogenase complex, mitochondrial kinase; HET: AZX; 1.90A {Homo sapiens} PDB: 2q8f_A* 2q8h_A Back     alignment and structure
>2btz_A Pyruvate dehydrogenase kinase isoenzyme 2; GHKL motif regulation, transferase; 2.2A {Homo sapiens} PDB: 2bu2_A* 2bu5_A* 2bu6_A* 2bu7_A* 2bu8_A* 3crk_A* 1jm6_A* 3crl_A* Back     alignment and structure
>1y8o_A [pyruvate dehydrogenase [lipoamide]] kinase isozy; pyruvate dehydrogenase kinase 3, lipoyl-bearing domain; HET: RED ADP; 2.48A {Homo sapiens} SCOP: a.29.5.1 d.122.1.4 PDB: 1y8n_A* 1y8p_A* 2pnr_A* 2q8i_A* Back     alignment and structure
>1i58_A Chemotaxis protein CHEA; beta-alpha sandwich, signaling protein, transferase; HET: ACP ADP; 1.60A {Thermotoga maritima} SCOP: d.122.1.3 PDB: 1i59_A* 1i5a_A* 1i5b_A* 1i5c_A* 1i5d_A* Back     alignment and structure
>1ysr_A Sensor-type histidine kinase PRRB; ATP-binding domain, structural genomics, mycobacterium tuberculosis structural proteomics project; 1.78A {Mycobacterium tuberculosis} SCOP: d.122.1.3 PDB: 1ys3_A Back     alignment and structure
>3a0y_A Sensor protein; ATP-LID, kinase, phosphoprotein, transferase, two-component regulatory system; 1.57A {Thermotoga maritima} PDB: 3a0t_A* 3a0x_A 3a0w_A 3a0z_A Back     alignment and structure
>1id0_A PHOQ histidine kinase; PHOQ/PHOP, signal transduction, transferase; HET: ANP; 1.60A {Escherichia coli} SCOP: d.122.1.3 PDB: 3cgz_A 3cgy_A Back     alignment and structure
>4ew8_A Sensor protein DIVL; signal transduction, two-component regulatory system, hiska GHKL domain, structural genomics; 2.50A {Caulobacter crescentus} Back     alignment and structure
>2c2a_A Sensor histidine kinase; phosphotransfer, PHOQ, selenomethionyl MAD, two-component systems, transferase; HET: ADP; 1.9A {Thermotoga maritima} SCOP: a.30.2.1 d.122.1.3 PDB: 3dge_A* Back     alignment and structure
>3zxq_A Hypoxia sensor histidine kinase response regulato; transferase; 1.90A {Mycobacterium tuberculosis} Back     alignment and structure
>3a0r_A Sensor protein; four helix bundle, PAS fold, kinase, phosphoprotein, transfe two-component regulatory system; 3.80A {Thermotoga maritima} Back     alignment and structure
>3zxo_A Redox sensor histidine kinase response regulator; transferase; HET: MSE; 1.90A {Mycobacterium tuberculosis} Back     alignment and structure
>3d36_A Sporulation kinase B; GHKL ATPase, four helix bundle, class I two-component histidine kinase, phosphoprotein; HET: ADP; 2.03A {Geobacillus stearothermophilus} Back     alignment and structure
>3ehh_A Sensor kinase (YOCF protein); four-helix bundle, GHL ATPase domain, transferase; HET: MSE ADP; 2.10A {Bacillus subtilis} PDB: 3ehj_A* 3gie_A* 3gif_A* 3gig_A* 3ehf_A* Back     alignment and structure
>1bxd_A ENVZ(290-450), protein (osmolarity sensor protein (ENVZ)); histidine kinase, osmosensor, His-Asp phosphorelay system, signal transduction; HET: ANP; NMR {Escherichia coli BL21} SCOP: d.122.1.3 Back     alignment and structure
>3ehg_A Sensor kinase (YOCF protein); GHL ATPase domain, transferase; HET: ATP; 1.74A {Bacillus subtilis} Back     alignment and structure
>1r62_A Nitrogen regulation protein NR(II); PII, histidine kinase, two component system, transfera; 1.60A {Escherichia coli} SCOP: d.122.1.3 Back     alignment and structure
>3sl2_A Sensor histidine kinase YYCG; ATP binding, intact ATP, bergerat fold, TR; HET: ATP; 1.61A {Bacillus subtilis} Back     alignment and structure
>1b3q_A Protein (chemotaxis protein CHEA); histine kinase, signal transduction, multi-domai protein, transferase; 2.60A {Thermotoga maritima} SCOP: a.30.2.1 b.40.7.1 d.122.1.3 PDB: 2ch4_A* 3ur1_A Back     alignment and structure
>3jz3_A Sensor protein QSEC; helix-turn-helix, kinase domain, ATP-binding, cell inner MEM cell membrane, kinase, membrane, nucleotide-binding; 2.50A {Escherichia coli} Back     alignment and structure
>1th8_A Anti-sigma F factor; SPOIIAB, SPOIIAA, anti-ANTI-sigma, sporulation, serine kinase, transcription; HET: ADP; 2.40A {Geobacillus stearothermophilus} SCOP: d.122.1.3 PDB: 1thn_A* 1til_A* 1l0o_A* 1tid_A* Back     alignment and structure
>1mu5_A Type II DNA topoisomerase VI subunit B; GHKL ATPase, helix two-turns helix; 2.00A {Sulfolobus shibatae} SCOP: a.156.1.3 d.14.1.3 d.122.1.2 PDB: 1mx0_A* 1z5b_A* 1z5a_A* 1z59_A* 1z5c_A* 2hkj_A* Back     alignment and structure
>3fv5_A DNA topoisomerase 4 subunit B; topoisomerase IV B subunit complex, antibiotic resistance, ATP-binding, nucleotide-binding; HET: DNA 1EU; 1.80A {Escherichia coli} PDB: 1s14_A* Back     alignment and structure
>2zbk_B Type 2 DNA topoisomerase 6 subunit B; DNA binding protein, decatenation, ATPase, drug design, DNA-binding, magnesium, metal-binding; HET: RDC; 3.56A {Sulfolobus shibatae} Back     alignment and structure
>4duh_A DNA gyrase subunit B; structure-based drug design, antibacterial, DNA gyrase B, GY isomerase-isomerase inhibitor complex; HET: DNA RLI; 1.50A {Escherichia coli} PDB: 1aj6_A* 1kzn_A* 3g7e_A* Back     alignment and structure
>3ttz_A DNA gyrase subunit B; protein-inhibitor complex, ATP-binding, structure-based drug antimicrobial, isomerase-isomerase inhibitor complex; HET: DNA 07N; 1.63A {Staphylococcus aureus} PDB: 3u2d_A* 3u2k_A* 3g75_A* 3g7b_A* Back     alignment and structure
>2wer_A ATP-dependent molecular chaperone HSP82; ATPase, ATP-binding, phosphoprotein, stress respo nucleotide-binding; HET: RDC; 1.60A {Saccharomyces cerevisiae} PDB: 2weq_A* 2wep_A* 1zwh_A* 1zw9_A* 2fxs_A* 3c11_A* 3c0e_A* 2yge_A* 2ygf_A* 2akp_A Back     alignment and structure
>2q2e_B Type 2 DNA topoisomerase 6 subunit B; DNA-binding, SPO11, ATPase; 4.00A {Methanosarcina mazei} Back     alignment and structure
>3cwv_A DNA gyrase, B subunit, truncated; structural genomics, unknown function, B-subunit binding, isomerase, nucleotide-binding, topoisomerase; HET: DNA; 1.95A {Myxococcus xanthus} Back     alignment and structure
>3t0h_A Heat shock protein HSP 90-alpha; chaperone, ATPase; 1.20A {Homo sapiens} SCOP: d.122.1.1 PDB: 3r4m_A 3t0z_A* 3t10_A* 3t1k_A* 3t2s_A* 1uyl_A 1uy7_A* 1uy8_A* 1uy9_A* 1uyc_A* 1uyd_A* 1uye_A* 1uyf_A* 1uyg_A* 1uyh_A* 1uyk_A* 1uy6_A 2cdd_A* 2uwd_A* 2vci_A* ... Back     alignment and structure
>1zxm_A TOPO IIA ATPase, DNA topoisomerase II, alpha isozyme; GHKL nucleotide-binding fold; HET: DNA ANP; 1.87A {Homo sapiens} PDB: 1zxn_A* Back     alignment and structure
>1ei1_A DNA gyrase B, GYRB; ATPase domain, dimer, isomerase; HET: DNA ANP; 2.30A {Escherichia coli} SCOP: d.14.1.3 d.122.1.2 Back     alignment and structure
>4emv_A DNA topoisomerase IV, B subunit; protein-inhibitor complex, ATP binding, structure-based drug antimicrobial, virtual screen; HET: DNA 0R9; 1.70A {Streptococcus pneumoniae GA47373} PDB: 4em7_A* Back     alignment and structure
>2gqp_A Endoplasmin; GRP94, HSP82, HSP90, HTPG, chaperone, ligand, NECA, NPCA, adenosine; HET: PA7 PG4 1PE; 1.50A {Canis lupus familiaris} SCOP: d.122.1.1 PDB: 1tc0_A* 1tbw_A* 1u0z_A* 1u2o_A* 1ysz_A* 1yt0_A* 1yt1_A* 2exl_A* 2fyp_A* 2gfd_A* 1tc6_A* 2h8m_A* 2hch_A* 2hg1_A* 3o2f_A* 2esa_A* Back     alignment and structure
>4fpp_A Phosphotransferase; four helix bundle, bergerat fold, CCKA, CTRA, CPDR, bacterial cytoplasme; 2.20A {Caulobacter crescentus} PDB: 4fmt_A Back     alignment and structure
>2ior_A Chaperone protein HTPG; heat shock protein, HSP90; HET: ADP; 1.65A {Escherichia coli} Back     alignment and structure
>1qy5_A Endoplasmin; GRP94, NECA, HSP90, chaperone; HET: NEC; 1.75A {Canis lupus familiaris} SCOP: d.122.1.1 PDB: 1qy8_A* 1qye_A* 1u0y_A* 1yt2_A* Back     alignment and structure
>3o0i_A HSP90AA1 protein; HSP90 heat-shock proteins, chaperone-inhibitor complex; HET: P54; 1.47A {Homo sapiens} PDB: 2fwz_A* 2fwy_A* 2h55_A* Back     alignment and structure
>1yc1_A HSP 86, heat shock protein HSP 90-alpha; cell-cycle, cancer, drug design, cell cycle; HET: 4BC; 1.70A {Homo sapiens} SCOP: d.122.1.1 PDB: 1yc3_A* 1yc4_A* Back     alignment and structure
>3na3_A DNA mismatch repair protein MLH1; MUTL protein homolog 1, DNA damag repair, structural genomics consortium, SGC, protein bindin; HET: DNA ATP; 2.50A {Homo sapiens} Back     alignment and structure
>1s16_A Topoisomerase IV subunit B; two-domain protein complexed with ADPNP; HET: ANP; 2.10A {Escherichia coli} SCOP: d.14.1.3 d.122.1.2 Back     alignment and structure
>3nmq_A Heat shock protein HSP 90-beta; ATPase, chaperone-chaperone inhibitor complex; HET: 7PP; 2.20A {Homo sapiens} SCOP: d.122.1.1 Back     alignment and structure
>3h4l_A DNA mismatch repair protein PMS1; ATP binding, DNA repair, DNA damage, nucleus, phosphop DNA binding protein, protein binding; HET: DNA ANP; 2.50A {Saccharomyces cerevisiae} Back     alignment and structure
>1h7s_A PMS1 protein homolog 2; DNA repair, GHL ATPase, mismatch repair, HNPCC; 1.95A {Homo sapiens} SCOP: d.14.1.3 d.122.1.2 PDB: 1h7u_A* 1ea6_A* Back     alignment and structure
>3peh_A Endoplasmin homolog; structural genomics, structural genomics consortium, SGC, HE protein, chaperone, ATP binding; HET: IBD; 2.75A {Plasmodium falciparum 3D7} PDB: 3pej_A* Back     alignment and structure
>3lnu_A Topoisomerase IV subunit B; PARE, ATP-binding, nucleotide-BI topoisomerase; 2.20A {Xanthomonas oryzae PV} PDB: 3lps_A* Back     alignment and structure
>1b63_A MUTL; DNA mismatch repair, ATPase; HET: ANP; 1.90A {Escherichia coli K12} SCOP: d.14.1.3 d.122.1.2 PDB: 1nhh_A* 1nhi_A* 1bkn_A 1nhj_A* 1b62_A* Back     alignment and structure
>1kij_A DNA gyrase subunit B; topoisomerase, gyrase B-coumarin complex, isomerase; HET: DNA NOV; 2.30A {Thermus thermophilus} SCOP: d.14.1.3 d.122.1.2 Back     alignment and structure
>1pvg_A DNA topoisomerase II; GHKL ATPase domain; HET: DNA ANP; 1.80A {Saccharomyces cerevisiae} SCOP: d.14.1.3 d.122.1.2 PDB: 1qzr_A* Back     alignment and structure
>1y4s_A Chaperone protein HTPG; HSP90, molecular chaperone, ATPase; HET: ADP; 2.90A {Escherichia coli} PDB: 1y4u_A Back     alignment and structure
>3ke6_A Protein RV1364C/MT1410; anti-sigma factor, anti-sigma factor antagonist, phosphatase serine kinase, ATPase, unknown function; 2.60A {Mycobacterium tuberculosis} Back     alignment and structure
>2ioq_A Chaperone protein HTPG; heat shock protein, HSP90; 3.50A {Escherichia coli} PDB: 2iop_A Back     alignment and structure
>2o1u_A Endoplasmin; GRP94, HSP82, HSP90, HTPG, chaperone, AMP-PNP, GP96; HET: ANP; 2.40A {Canis lupus familiaris} PDB: 2o1v_A* 2o1w_A 2o1t_A Back     alignment and structure
>1ixm_A SPO0B, protein (sporulation response regulatory protein); phosphotransferase, two component system; 2.60A {Bacillus subtilis} SCOP: d.123.1.1 PDB: 2ftk_A* 1f51_A Back     alignment and structure
>2cg9_A ATP-dependent molecular chaperone HSP82; chaperone complex, HSP90, heat shock protein, ATP-binding, heat shock, nucleotide-binding, acetylation; HET: ATP; 3.1A {Saccharomyces cerevisiae} Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 303
d1y8oa1164 a.29.5.1 (A:13-176) Pyruvate dehydrogenase kinase 8e-66
d1jm6a1167 a.29.5.1 (A:1003-1169) Pyruvate dehydrogenase kina 3e-65
d1gkza1148 a.29.5.1 (A:38-185) Branched-chain alpha-ketoacid 4e-63
d1gkza2193 d.122.1.4 (A:186-378) Branched-chain alpha-ketoaci 1e-16
d1jm6a2190 d.122.1.4 (A:1177-1366) Pyruvate dehydrogenase kin 3e-15
d1y8oa2125 d.122.1.4 (A:177-301) Pyruvate dehydrogenase kinas 6e-11
>d1y8oa1 a.29.5.1 (A:13-176) Pyruvate dehydrogenase kinase {Human (Homo sapiens) [TaxId: 9606]} Length = 164 Back     information, alignment and structure

class: All alpha proteins
fold: Bromodomain-like
superfamily: alpha-ketoacid dehydrogenase kinase, N-terminal domain
family: alpha-ketoacid dehydrogenase kinase, N-terminal domain
domain: Pyruvate dehydrogenase kinase
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  201 bits (513), Expect = 8e-66
 Identities = 53/166 (31%), Positives = 87/166 (52%), Gaps = 6/166 (3%)

Query: 16  EEVGRWGCMKQTGVSLRYMMEFGSKPTDKNLLISAQFLHKELPIRIARRAIELETLPYGL 75
           +++ R+     + +S++  ++FG     +    S  FL KELP+R+A    E+  LP  L
Sbjct: 2   KQIERYSRFSPSPLSIKQFLDFGRDNACEK--TSYMFLRKELPVRLANTMREVNLLPDNL 59

Query: 76  SEKPAVLKVRDWYLDSFRDLRSFPDIRSTSDE--RDFTQMIKAIKVRHNNVVPMMALGLQ 133
             +P+V  V+ WY+ SF +L  + +      +   +F Q++  ++ RHN+VVP MA G+ 
Sbjct: 60  LNRPSVGLVQSWYMQSFLELLEYENKSPEDPQVLDNFLQVLIKVRNRHNDVVPTMAQGVI 119

Query: 134 QLKKEMDPKIVYEDLDEIHQFLDRFYMSRIGIRMLIGQHVELHNPN 179
           + K++            I  FLDRFY +RI  RMLI QH  L   +
Sbjct: 120 EYKEKFGFDPF--ISTNIQYFLDRFYTNRISFRMLINQHTLLFGGD 163
>d1jm6a1 a.29.5.1 (A:1003-1169) Pyruvate dehydrogenase kinase {Rat (Rattus norvegicus), isozyme 2 [TaxId: 10116]} Length = 167 Back     information, alignment and structure
>d1gkza1 a.29.5.1 (A:38-185) Branched-chain alpha-ketoacid dehydrogenase kinase (BCK) {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 148 Back     information, alignment and structure
>d1gkza2 d.122.1.4 (A:186-378) Branched-chain alpha-ketoacid dehydrogenase kinase (BCK) {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 193 Back     information, alignment and structure
>d1jm6a2 d.122.1.4 (A:1177-1366) Pyruvate dehydrogenase kinase {Rat (Rattus norvegicus), isozyme 2 [TaxId: 10116]} Length = 190 Back     information, alignment and structure
>d1y8oa2 d.122.1.4 (A:177-301) Pyruvate dehydrogenase kinase {Human (Homo sapiens) [TaxId: 9606]} Length = 125 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query303
d1jm6a1167 Pyruvate dehydrogenase kinase {Rat (Rattus norvegi 100.0
d1y8oa1164 Pyruvate dehydrogenase kinase {Human (Homo sapiens 100.0
d1gkza1148 Branched-chain alpha-ketoacid dehydrogenase kinase 100.0
d1jm6a2190 Pyruvate dehydrogenase kinase {Rat (Rattus norvegi 99.81
d1gkza2193 Branched-chain alpha-ketoacid dehydrogenase kinase 99.79
d1y8oa2125 Pyruvate dehydrogenase kinase {Human (Homo sapiens 99.75
d1ysra1148 Sensor-type histidine kinase PrrB {Mycobacterium t 97.75
d2c2aa2161 Sensor histidine kinase TM0853 {Thermotoga maritim 97.47
d1id0a_146 Histidine kinase PhoQ domain {Escherichia coli [Ta 97.36
d1bxda_161 Histidine kinase domain of the osmosensor EnvZ {Es 96.9
d1r62a_156 Nitrogen regulation protein NtrB, C-terminal domai 96.48
d2hkja3 219 Topoisomerase VI-B subunit {Archaeon Sulfolobus sh 95.57
d1ixma_179 Sporulation response regulatory protein Spo0B {Bac 95.54
d1th8a_139 Anti-sigma factor spoIIab {Bacillus stearothermoph 94.93
d1s14a_ 168 Topoisomerase IV subunit B {Escherichia coli [TaxI 93.1
d1uyla_ 208 HSP90 {Human (Homo sapiens) [TaxId: 9606]} 91.03
d2iwxa1 213 HSP90 {Baker's yeast (Saccharomyces cerevisiae) [T 91.02
d1h7sa2 203 DNA mismatch repair protein PMS2 {Human (Homo sapi 89.65
d2gqpa1 227 HSP90 {Dog (Canis familiaris) [TaxId: 9615]} 89.64
d1b63a2 218 DNA mismatch repair protein MutL {Escherichia coli 82.41
>d1jm6a1 a.29.5.1 (A:1003-1169) Pyruvate dehydrogenase kinase {Rat (Rattus norvegicus), isozyme 2 [TaxId: 10116]} Back     information, alignment and structure
class: All alpha proteins
fold: Bromodomain-like
superfamily: alpha-ketoacid dehydrogenase kinase, N-terminal domain
family: alpha-ketoacid dehydrogenase kinase, N-terminal domain
domain: Pyruvate dehydrogenase kinase
species: Rat (Rattus norvegicus), isozyme 2 [TaxId: 10116]

Probab=100.00  E-value=1.5e-54  Score=374.07  Aligned_cols=161  Identities=34%  Similarity=0.554  Sum_probs=141.9

Q ss_pred             HHHHHHHHhhCCCCCCCCHHHHHhcCCCCChHHHHHHHHHHHHhhHHHHHHHHHHHhcCCccccCCchHHHHHHHHHHHH
Q 022051           13 SLIEEVGRWGCMKQTGVSLRYMMEFGSKPTDKNLLISAQFLHKELPIRIARRAIELETLPYGLSEKPAVLKVRDWYLDSF   92 (303)
Q Consensus        13 ~l~~~I~~ya~~~~~plSL~~Ll~fG~~~~~~~ll~sa~fl~~ELPvRlA~ri~~l~~LP~~l~~nP~i~~V~~~Y~~Sf   92 (303)
                      ++.+.|++||+++|+|+||+||++||++++.  ..+|++||++||||||||||++|++|||+++.||+|++|++||++||
T Consensus         5 ~~~~~I~~ya~~~~tplSL~ql~~FG~~~~~--~~~S~~fl~~ELPiRLAhRi~el~~LP~~l~~~p~I~~V~~~Y~~SF   82 (167)
T d1jm6a1           5 GAPKYIEHFSKFSPSPLSMKQFLDFGSSNAC--EKTSFTFLRQELPVRLANIMKEINLLPDRVLSTPSVQLVQSWYVQSL   82 (167)
T ss_dssp             SHHHHHHHHTTSCCCCCBHHHHHTTC---CC--HHHHHHHHHHHHHHHHHHHHHHHTTSCHHHHTSHHHHHHHHHHHHHH
T ss_pred             hhHHHHHHHHcCCCCCCCHHHHHHhCCCCch--hhHHHHHHHHHHHHHHHHHHHHHHHCCHHHhcCCcHHHHHHHHHHHH
Confidence            5788999999999999999999999987554  34699999999999999999999999999999999999999999999


Q ss_pred             HHhhcCCC--CCCchhHHHHHHHHHHHHHhcCCcHHHHHHHHHHHhhhcCCcccCCChHHHHHHHHHHHhhhhhHhhhHh
Q 022051           93 RDLRSFPD--IRSTSDERDFTQMIKAIKVRHNNVVPMMALGLQQLKKEMDPKIVYEDLDEIHQFLDRFYMSRIGIRMLIG  170 (303)
Q Consensus        93 ~~l~~~p~--i~~~~~~~~F~~~L~~i~~~H~~vi~~lA~G~~E~k~~~~~~~~~~~~~~i~~FLD~f~~sRIsiRlL~~  170 (303)
                      ++|++||.  |++.+++.+|+++|+.+++||++|+++||+|++|+|+..+.+.  .+.++|++||||||+||||||||++
T Consensus        83 ~~l~~f~~~~~~~~~~~~~F~~~L~~i~~rH~~vv~tlA~G~~E~k~~~~~~~--~~~~~i~~FLdrf~~sRIgiR~L~~  160 (167)
T d1jm6a1          83 LDIMEFLDKDPEDHRTLSQFTDALVTIRNRHNDVVPTMAQGVLEYKDTYGDDP--VSNQNIQYFLDRFYLSRISIRMLIN  160 (167)
T ss_dssp             HHHHTTSSSCTTSHHHHHHHHHHHHHHHHHTTTHHHHHHHHHHCC------CC--CSCCTHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHhcccCCCCchHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHhcccc--CCHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999985  7899999999999999999999999999999999998875431  2345899999999999999999999


Q ss_pred             hhhhhcC
Q 022051          171 QHVELHN  177 (303)
Q Consensus       171 qHlaL~~  177 (303)
                      ||++|++
T Consensus       161 QHlaL~d  167 (167)
T d1jm6a1         161 QHTLIFD  167 (167)
T ss_dssp             HHHHHHC
T ss_pred             HHHHhhC
Confidence            9999974
>d1y8oa1 a.29.5.1 (A:13-176) Pyruvate dehydrogenase kinase {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1gkza1 a.29.5.1 (A:38-185) Branched-chain alpha-ketoacid dehydrogenase kinase (BCK) {Rat (Rattus norvegicus) [TaxId: 10116]} Back     information, alignment and structure
>d1jm6a2 d.122.1.4 (A:1177-1366) Pyruvate dehydrogenase kinase {Rat (Rattus norvegicus), isozyme 2 [TaxId: 10116]} Back     information, alignment and structure
>d1gkza2 d.122.1.4 (A:186-378) Branched-chain alpha-ketoacid dehydrogenase kinase (BCK) {Rat (Rattus norvegicus) [TaxId: 10116]} Back     information, alignment and structure
>d1y8oa2 d.122.1.4 (A:177-301) Pyruvate dehydrogenase kinase {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1ysra1 d.122.1.3 (A:299-446) Sensor-type histidine kinase PrrB {Mycobacterium tuberculosis [TaxId: 1773]} Back     information, alignment and structure
>d2c2aa2 d.122.1.3 (A:321-481) Sensor histidine kinase TM0853 {Thermotoga maritima [TaxId: 2336]} Back     information, alignment and structure
>d1id0a_ d.122.1.3 (A:) Histidine kinase PhoQ domain {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1bxda_ d.122.1.3 (A:) Histidine kinase domain of the osmosensor EnvZ {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1r62a_ d.122.1.3 (A:) Nitrogen regulation protein NtrB, C-terminal domain {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d2hkja3 d.122.1.2 (A:10-228) Topoisomerase VI-B subunit {Archaeon Sulfolobus shibatae [TaxId: 2286]} Back     information, alignment and structure
>d1ixma_ d.123.1.1 (A:) Sporulation response regulatory protein Spo0B {Bacillus subtilis [TaxId: 1423]} Back     information, alignment and structure
>d1th8a_ d.122.1.3 (A:) Anti-sigma factor spoIIab {Bacillus stearothermophilus [TaxId: 1422]} Back     information, alignment and structure
>d1s14a_ d.122.1.2 (A:) Topoisomerase IV subunit B {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1uyla_ d.122.1.1 (A:) HSP90 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2iwxa1 d.122.1.1 (A:2-214) HSP90 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1h7sa2 d.122.1.2 (A:29-231) DNA mismatch repair protein PMS2 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2gqpa1 d.122.1.1 (A:74-337) HSP90 {Dog (Canis familiaris) [TaxId: 9615]} Back     information, alignment and structure