Citrus Sinensis ID: 022098

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300--
Protein Sequence
MFAALFSKLGVPIKTTVSATVLEEALNGMVTVRPLLLDQHITRKVEKQCAHFYSVTITEEEARAGFVCRVQSSDKSKFKLLYFDREGTGGLSLALQEDCTKTGKVTSAGMYFLGFPVYRLDQTATSMAAAKDPDAAFFKKLDGFQPCEITELKAGTHVFAVYGDNFFKSASYMIEALCAAPFTEEKENLRAVEAEILSKRAELSKFESEYREVLAQFTEMTSRYAQEMQAIDELLKQRNEIHASYTTAPPMKRSTSKNRSRGSPKETKEEGQVRDKKPTMRDRPKKKKWFNIHLKADKRNKC
Secondary Structure (PSIPRED)
cHHHHHHcccccccccccHHHHHHHHccccccccccccccEEEEEEccEEEEEEEEEcHHHHHcccEEEEEccccccEEEEEEEccccccccEEEEEEcccccccEEEEEEEEcccccccccccHHHHHcccccHHHHHHcccccccccEEcccccEEEEEEccccccccEEEEEEEEccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccEEccccccccccc
Secondary Structure Prediction (SSPRO)
cHHHHHHHccccccccccHHHHHHHHcccEEEEEcccccEcccEEEccEEEEEEEEEcHHHHHccEEEEEEEcccccEEEEEEEccccccEEEEEEEcccccccEEEEEEEEEcccEEEccccccHHHHcccccHHHHHHHccccccEEEEcccccEEEEEEccccccccEEEEEEEEcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccEEEEEEccccccccc
Coil and Loop (DISEMBL)
MFAALFSklgvpiktTVSATVLEEALNGMvtvrpllldqHITRKVEKQCAHFYSVTITEEEARAGFvcrvqssdkskfkllyfdregtgglsLALQEDctktgkvtsagmyflgfpvyrldqtatsmaaakdpdaaffkkldgfqpceitelkaGTHVFAVYGDNFFKSASYMIEALcaapfteeKENLRAVEAEILSKRAELSKFESEYREVLAQFTEMTSRYAQEMQAIDELLKQRNEIHasyttappmkrstsknrsrgspketkeegqvrdkkptmrdrpkkkkwFNIHLkadkrnkc
Flexible Loop (DISEMBL)
mfaalfsklgvpiktTVSATVLEEALNGMVTVRPLLLDQHITRKVEKQCAHFYSVTITEEEARAGFvcrvqssdkskFKLLYFDREGTGGLSLALQEDCTKTGKVTSAGMYFLGFPVYRLDQTATSMAAAKDPDAAFFKKLDGFQPCEITELKAGTHVFAVYGDNFFKSASYMIEALCAAPFTEEKENLRAVEAEILSKraelskfesEYREVLAQFTEMTSRYAQEMQAIDELLKQRNEIHAsyttappmkrstsknrsrgspketkeegqvrdkkptmrdrpkkkkwfnihlkadkrnkc
Low Complexity Region (SEG)
MFAALFSKLGVPIKTTVSATVLEEALNGMVTVRPLLLDQHITRKVEKQCAHFYSVTITEEEARAGFVCRVQSSDKSKFKLLYFDREGTGGLSLALQEDCTKTGKVTSAGMYFLGFPVYRLDQTATSMaaakdpdaaffkkLDGFQPCEITELKAGTHVFAVYGDNFFKSASYMIEALCAAPFTEEKENLRAVEAEILSKRAELSKFESEYREVLAQFTEMTSRYAQEMQAIDELLKQRNEIHASYTTAPPMKRSTSKNRSRGSPKETKEEGQVRDKKPTMRDRPKKKKWFNIHLKADKRNKC
Disordered region (IsUnstruct)
***ALFSKLGVPIKTTVSATVLEEALNGMVTVRPLLLDQHITRKVEKQCAHFYSVTITEEEARAGFVCRVQSSDKSKFKLLYFDREGTGGLSLALQEDCTKTGKVTSAGMYFLGFPVYRLDQTATSMAAAKDPDAAFFKKLDGFQPCEITELKAGTHVFAVYGDNFFKSASYMIEALCAAPFTEEKENLRAVEAEILS*******F**EYREVLAQFTEM**********************************************************************************
Disordered Region (DISOPRED)
MFAALFSKLGVPIKTTVSATVLEEALNGMVTVRPLL**********KQCAHFYSVTITEEEARAGFVCRVQSSDKSKFKLLYFDREGTGGLS*****************MYFLGFPVYRLDQTATSMAAAKDPDAAFFKKLDGFQPCEITELKAGTHVFAVYGDNFFKSASYMIEALCAAPFTEEKENLRAVEAEILSKRAELSKFESEYREVLAQFTEMTSRYAQEMQAIDELLKQRNEIHASYT********************************************NIHLKA******
Disordered Region (DISEMBL)
MFAALFSKLGVPIKTTVSATVLEEALNGMVTVRPLLLDQHITRKVEKQCAHFYSVTITEEEARAGFVCRVQSSDKSKFKLLYFDREGTGGLSLALQEDCTKTGKVTSAGMYFLGFPVYRLDQTATSMAAAKDPDAAFFKKLDGFQPCEITELKAGTHVFAVYGDNFFKSASYMIEALCAAPFTEEKENLRAVEAEILSKRAELSKFESEYREVLAQFTEMTSRYAQEMQAIDELLKQRNEIHASYTTA*************************************KKKWFNIHLKADKRNKC
Disordered Region (DISPRO)
MFAALFSKLGVPIKTTVSATVLEEALNGMVTVRPLLLDQHITRKVEKQCAHFYSVTITEEEARAGFVCRVQSSDKSKFKLLYFDREGTGGLSLALQEDCTKTGKVTSAGMYFLGFPVYRLDQTATSMAAAKDPDAAFFKKLDGFQPCEITELKAGTHVFAVYGDNFFKSASYMIEALCAAPFTEEKENLRAVEAEILSKRAELSKFESEYREVLAQFTEMTSRYAQEMQAIDELLKQRNEIHASYTTA************************************KKKKWFNIHLKAD*****
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MFAALFSKLGVPIKTTVSATVLEEALNGMVTVRPLLLDQHITRKVEKQCAHFYSVTITEEEARAGFVCRVQSSDKSKFKLLYFDREGTGGLSLALQEDCTKTGKVTSAGMYFLGFPVYRLDQTATSMAAAKDPDAAFFKKLDGFQPCEITELKAGTHVFAVYGDNFFKSASYMIEALCAAPFTEEKENxxxxxxxxxxxxxxxxxxxxxYREVLAQFTEMTSRYAQEMQAIDELLKQRNEIHASYTTAPPMKRSTSKNRSRGSPKETKEEGQVRDKKPTMRDRPKKKKWFNIHLKADKRNKC
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	302	2.2.26 [Sep-21-2011]
Q8VXV4	436	Chaperone protein dnaJ 16	yes	no	1.0	0.692	0.679	1e-127
Q9ZSY2	410	Chaperone protein dnaJ 15	no	no	0.990	0.729	0.584	1e-101
Q6XL73	414	Chaperone protein dnaJ 39	no	no	0.980	0.714	0.618	1e-101

>sp|Q8VXV4|DNJ16_ARATH Chaperone protein dnaJ 16 OS=Arabidopsis thaliana GN=ATJ16 PE=2 SV=1

 Score =  456 bits (1172), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 223/328 (67%), Positives = 262/328 (79%), Gaps = 26/328 (7%)

Query: 1   MFAALFSKLGVPIKTTVSATVLEEALNGMVTVRPLLLDQHITRKVEKQCAHFYSVTITEE 60
           +FAALFSKLGVPIKT+VSAT+LEEALNG V+V PL+L Q +++KVEKQCAHFY+VTI+EE
Sbjct: 109 VFAALFSKLGVPIKTSVSATILEEALNGRVSVDPLVLGQAVSKKVEKQCAHFYAVTISEE 168

Query: 61  EARAGFVCRVQSSDKSKFKLLYFDREGTGGLSLALQEDCTKTGKVTSAGMYFLGFPVYRL 120
           E  AG VCRV+SS KSKFKLLYFD+E   GLSLALQED  +TGK+TSAGMYFLGFPVYRL
Sbjct: 169 EVSAGLVCRVESSSKSKFKLLYFDQEANSGLSLALQEDSKRTGKITSAGMYFLGFPVYRL 228

Query: 121 DQTATSMAAAKDPDAAFFKKLDGFQPCEITELKAGTHVFAVYGDNFFKSASYMIEALCAA 180
           D T  SMA AKDP+ AFFKKLDGFQ CE+TELKAGTHVFAVYGDNFFK+ SY I+ LCAA
Sbjct: 229 DHTINSMAQAKDPETAFFKKLDGFQQCEVTELKAGTHVFAVYGDNFFKNVSYTIQVLCAA 288

Query: 181 PFTEEKENLRAVEAEILSKRAELSKFESEYREVLAQFTEMTSRYAQEMQAIDELLKQRNE 240
            FT+EKE+LR+VEA+IL+KRAEL+KFE+EYREVL QFT+MTSRYAQEMQ+IDELLKQRNE
Sbjct: 289 AFTQEKEDLRSVEAQILTKRAELAKFETEYREVLVQFTDMTSRYAQEMQSIDELLKQRNE 348

Query: 241 IHASYTTAPPMKRSTSKNRSRGSP----------------------KETKEEGQVRDKKP 278
           IH++YTT P MKRS+SKNR R S                       +E +E  + ++KKP
Sbjct: 349 IHSAYTTIPLMKRSSSKNRMRKSSFKKAAAKAPAPTEQEEEEEEEEEEEEESSRQKNKKP 408

Query: 279 TMRDRP----KKKKWFNIHLKADKRNKC 302
           +  D+     KK KWFN+HLK DK+  C
Sbjct: 409 STCDKSETLKKKSKWFNLHLKLDKKKPC 436

Have a continuous role in plant development probably in the structural organization of compartments (By similarity). Seems to not be involved in gravitropism signaling pathway.
Arabidopsis thaliana (taxid: 3702)

>sp|Q9ZSY2|DNJ15_ARATH Chaperone protein dnaJ 15 OS=Arabidopsis thaliana GN=ATJ15 PE=1 SV=1

 Score =  368 bits (945), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 177/303 (58%), Positives = 235/303 (77%), Gaps = 4/303 (1%)

Query: 1   MFAALFSKLGVPIKTTVSATVLEEALNGMVTVRPLLLDQHITRKVEKQCAHFYSVTITEE 60
           MFAALFSKLGVPIKTTVSA VLEEA+NG VTVRPL +   ++ KVEKQCAHF+ VTI+E+
Sbjct: 106 MFAALFSKLGVPIKTTVSANVLEEAMNGTVTVRPLPIGTSVSGKVEKQCAHFFGVTISEQ 165

Query: 61  EARAGFVCRVQSSDKSKFKLLYFDREGTGGLSLALQEDCTKTGKVTSAGMYFLGFPVYRL 120
           +A +G V RV S+ +SKFKLLYF+++ +GG  LALQE+  KTGKVTSAGMYFL F VYR+
Sbjct: 166 QAESGVVVRVTSTAQSKFKLLYFEQDSSGGYGLALQEEREKTGKVTSAGMYFLHFQVYRM 225

Query: 121 DQTATSMAAAKDPDAAFFKKLDGFQPCEITELKAGTHVFAVYGDNFFKSASYMIEALCAA 180
           D T  ++AAAKDP++AFFK+L+G QPCE++ELKAGTH+FAVYGDNFFK+ASY IEALCA 
Sbjct: 226 DTTVNALAAAKDPESAFFKRLEGLQPCEVSELKAGTHIFAVYGDNFFKTASYTIEALCAK 285

Query: 181 PFTEEKENLRAVEAEILSKRAELSKFESEYREVLAQFTEMTSRYAQEMQAIDELLKQRNE 240
            + +  E L+ +EA+IL KR EL +FE+EYR+ LA+F E+T+RY QE Q +DELLKQR+ 
Sbjct: 286 TYEDTTEKLKEIEAQILRKRNELRQFETEYRKALARFQEVTNRYTQEKQTVDELLKQRDT 345

Query: 241 IHASYTTA--PPMKRSTSKNRSRGSPKETKEEGQVRDKKPTMRDRPK-KKKWFNIHLK-A 296
           IH++++    P     ++ + S+    E+K +G    ++    +R K K+KWFN++LK +
Sbjct: 346 IHSTFSVVKTPSGNNLSNGSSSKAQGDESKGDGDSAGEEGGTENRDKSKRKWFNLNLKGS 405

Query: 297 DKR 299
           DK+
Sbjct: 406 DKK 408

Have a continuous role in plant development probably in the structural organization of compartments (By similarity). Seems to be involved in early gravitropic signal transduction within the gravity-perceiving cells (statocytes), where it influences pH changes and auxin distribution. Probably affects the localization and/or activity of auxin efflux carrier components (PIN proteins) or other proteins involved in lateral auxin transport.

Arabidopsis thaliana (taxid: 3702)

>sp|Q6XL73|DNJ39_ARATH Chaperone protein dnaJ 39 OS=Arabidopsis thaliana GN=ATJ39 PE=2 SV=2

 Score =  367 bits (942), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 188/304 (61%), Positives = 231/304 (75%), Gaps = 8/304 (2%)

Query: 1   MFAALFSKLGVPIKTTVSATVLEEALNGMVTVRPLLLDQHITRKVEKQCAHFYSVTITEE 60
           +FAALF+KLGV IKTTVSA +L EALNG VT  PL++ Q ++RKVEKQ AHFYSVT+TEE
Sbjct: 112 IFAALFNKLGVQIKTTVSANLLGEALNGTVTTLPLMVGQVVSRKVEKQSAHFYSVTLTEE 171

Query: 61  EARAGFVCRVQSSDKSKFKLLYFDREGTGGLSLALQEDCTKTGKVTSAGMYFLGFPVYRL 120
           EA+ G +C+V SS K+KFKLLYFD+   GGLSLALQED  KTGK+++AG+YF GFPVYR 
Sbjct: 172 EAQDGLICKVHSSAKNKFKLLYFDQVENGGLSLALQEDSRKTGKLSTAGLYFFGFPVYRF 231

Query: 121 DQTATSMAAAKDPDAAFFKKLDGFQPCEITELKAGTHVFAVYGDNFFKSASYMIEALCAA 180
           D    S A ++DP+  FFK+LD FQP EITELKAG+HVFAVYGDNFFKS SY +E   +A
Sbjct: 232 DHRVNSRALSRDPETGFFKRLDAFQPFEITELKAGSHVFAVYGDNFFKSVSYTLEIFSSA 291

Query: 181 PFTEEKENLRAVEAEILSKRAELSKFESEYREVLAQFTEMTSRYAQEMQAIDELLKQRNE 240
           PF  EKE+LR+ EA+I+SKR EL KFE+EY EV AQFTEM S+   E+Q IDELLK+RNE
Sbjct: 292 PFGNEKESLRSTEAQIVSKRTELLKFEAEYHEVFAQFTEMASKCTGEVQEIDELLKRRNE 351

Query: 241 IHASYTTAPPMKRSTSKNRSRGSPK-----ETKEEGQVRDKKPTMRDRPKKKKWFNIHLK 295
           I A+YT  PP K+ +SK+RS    K     E +EEG+V  ++       KKKKW+NI L+
Sbjct: 352 ICAAYTIFPPTKQGSSKSRSWSKKKSSLLMEPREEGEVAVRE---EGGVKKKKWYNIQLR 408

Query: 296 ADKR 299
            DK+
Sbjct: 409 QDKK 412

Have a continuous role in plant development probably in the structural organization of compartments (By similarity). Seems to be involved in early gravitropic signal transduction within the gravity-perceiving cells (statocytes).

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	302
147794990	408	hypothetical protein VITISV_024054 [Viti	0.993	0.735	0.817	1e-146
296086494	408	unnamed protein product [Vitis vinifera]	0.993	0.735	0.817	1e-146
255558376	410	altered response to gravity (arg1), plan	1.0	0.736	0.857	1e-144
356498024	410	PREDICTED: chaperone protein dnaJ 16-lik	0.993	0.731	0.791	1e-141
224100225	408	predicted protein [Populus trichocarpa]	1.0	0.740	0.850	1e-140
449452046	407	PREDICTED: chaperone protein dnaJ 16-lik	0.990	0.734	0.804	1e-140
356501218	413	PREDICTED: chaperone protein dnaJ 16-lik	0.993	0.726	0.801	1e-138
357486161	414	Chaperone protein dnaJ [Medicago truncat	0.996	0.727	0.794	1e-138
359473327	413	PREDICTED: chaperone protein dnaJ 16 [Vi	0.937	0.685	0.801	1e-135
343171894	415	chaperone protein dnaJ 16-like protein,	0.993	0.722	0.778	1e-127

>gi|147794990|emb|CAN74067.1| hypothetical protein VITISV_024054 [Vitis vinifera]

 Score =  524 bits (1350), Expect = e-146,   Method: Compositional matrix adjust.
 Identities = 247/302 (81%), Positives = 274/302 (90%), Gaps = 2/302 (0%)

Query: 1   MFAALFSKLGVPIKTTVSATVLEEALNGMVTVRPLLLDQHITRKVEKQCAHFYSVTITEE 60
           MFAALFSKLGVPIKTTVSATVLE+ALNG+VTVRPL L Q + +KVEKQCAHFYSVT+TEE
Sbjct: 109 MFAALFSKLGVPIKTTVSATVLEDALNGVVTVRPLTLGQPVVKKVEKQCAHFYSVTLTEE 168

Query: 61  EARAGFVCRVQSSDKSKFKLLYFDREGTGGLSLALQEDCTKTGKVTSAGMYFLGFPVYRL 120
           EA+ GFVCRVQSSDKSKFKLLYFD+E  GGL+L+LQED  +TGKVTSAGMYFLGFPVYRL
Sbjct: 169 EAQTGFVCRVQSSDKSKFKLLYFDQEEGGGLNLSLQEDSARTGKVTSAGMYFLGFPVYRL 228

Query: 121 DQTATSMAAAKDPDAAFFKKLDGFQPCEITELKAGTHVFAVYGDNFFKSASYMIEALCAA 180
           DQT  SMAAAKDPD+AFFK+LDGFQPCE+TELKAGTHVFAVYGDNFFKS SY IEALC A
Sbjct: 229 DQTVNSMAAAKDPDSAFFKRLDGFQPCEMTELKAGTHVFAVYGDNFFKSVSYTIEALCTA 288

Query: 181 PFTEEKENLRAVEAEILSKRAELSKFESEYREVLAQFTEMTSRYAQEMQAIDELLKQRNE 240
           PF EEKENLRAVEA+IL+KR ELSKFE+EYREVL QFTEMTSRYAQEMQAID+LLKQRNE
Sbjct: 289 PFAEEKENLRAVEAQILTKRVELSKFETEYREVLTQFTEMTSRYAQEMQAIDDLLKQRNE 348

Query: 241 IHASYTTAPPMKRSTSKNRSRGSPKETKEEGQVRDKKPTMRDRPKKKKWFNIHLKADKRN 300
           IHASY++APP+KRS SKN  RG  K++K++GQV+DKKP  R+RPKKKKW+NIHLK DK  
Sbjct: 349 IHASYSSAPPIKRSRSKN--RGLSKDSKDDGQVKDKKPAFRERPKKKKWYNIHLKVDKSK 406

Query: 301 KC 302
            C
Sbjct: 407 PC 408

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|296086494|emb|CBI32083.3| unnamed protein product [Vitis vinifera]

 Score =  524 bits (1349), Expect = e-146,   Method: Compositional matrix adjust.
 Identities = 247/302 (81%), Positives = 274/302 (90%), Gaps = 2/302 (0%)

Query: 1   MFAALFSKLGVPIKTTVSATVLEEALNGMVTVRPLLLDQHITRKVEKQCAHFYSVTITEE 60
           MFAALFSKLGVPIKTTVSATVLE+ALNG+VTVRPL L Q + +KVEKQCAHFYSVT+TEE
Sbjct: 109 MFAALFSKLGVPIKTTVSATVLEDALNGVVTVRPLTLGQPVVKKVEKQCAHFYSVTLTEE 168

Query: 61  EARAGFVCRVQSSDKSKFKLLYFDREGTGGLSLALQEDCTKTGKVTSAGMYFLGFPVYRL 120
           EA+ GFVCRVQSSDKSKFKLLYFD+E  GGL+L+LQED  +TGKVTSAGMYFLGFPVYRL
Sbjct: 169 EAQTGFVCRVQSSDKSKFKLLYFDQEEGGGLNLSLQEDSARTGKVTSAGMYFLGFPVYRL 228

Query: 121 DQTATSMAAAKDPDAAFFKKLDGFQPCEITELKAGTHVFAVYGDNFFKSASYMIEALCAA 180
           DQT  SMAAAKDPD+AFFK+LDGFQPCE+TELKAGTHVFAVYGDNFFKS SY IEALC A
Sbjct: 229 DQTVNSMAAAKDPDSAFFKRLDGFQPCEMTELKAGTHVFAVYGDNFFKSVSYTIEALCTA 288

Query: 181 PFTEEKENLRAVEAEILSKRAELSKFESEYREVLAQFTEMTSRYAQEMQAIDELLKQRNE 240
           PF EEKENLRAVEA+IL+KR ELSKFE+EYREVL QFTEMTSRYAQEMQAID+LLKQRNE
Sbjct: 289 PFAEEKENLRAVEAQILTKRVELSKFETEYREVLTQFTEMTSRYAQEMQAIDDLLKQRNE 348

Query: 241 IHASYTTAPPMKRSTSKNRSRGSPKETKEEGQVRDKKPTMRDRPKKKKWFNIHLKADKRN 300
           IHASY++APP+KRS SKN  RG  K++K++GQV+DKKP  R+RPKKKKW+NIHLK DK  
Sbjct: 349 IHASYSSAPPIKRSRSKN--RGLSKDSKDDGQVKDKKPAFRERPKKKKWYNIHLKVDKSK 406

Query: 301 KC 302
            C
Sbjct: 407 PC 408

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255558376|ref|XP_002520215.1| altered response to gravity (arg1), plant, putative [Ricinus communis] gi|223540707|gb|EEF42270.1| altered response to gravity (arg1), plant, putative [Ricinus communis]

 Score =  517 bits (1332), Expect = e-144,   Method: Compositional matrix adjust.
 Identities = 259/302 (85%), Positives = 280/302 (92%)

Query: 1   MFAALFSKLGVPIKTTVSATVLEEALNGMVTVRPLLLDQHITRKVEKQCAHFYSVTITEE 60
           MFAALFSKLGVPIKTTVSATVLEEALNG+V++RPLL+ QHI+RKVEKQCAHFYSVTITEE
Sbjct: 109 MFAALFSKLGVPIKTTVSATVLEEALNGVVSIRPLLVGQHISRKVEKQCAHFYSVTITEE 168

Query: 61  EARAGFVCRVQSSDKSKFKLLYFDREGTGGLSLALQEDCTKTGKVTSAGMYFLGFPVYRL 120
           EARAGFVCRVQSSDKSKFKLLYFD+E  GGLSLALQED +KTGKVTSAGMYFL FPVYRL
Sbjct: 169 EARAGFVCRVQSSDKSKFKLLYFDQEENGGLSLALQEDSSKTGKVTSAGMYFLCFPVYRL 228

Query: 121 DQTATSMAAAKDPDAAFFKKLDGFQPCEITELKAGTHVFAVYGDNFFKSASYMIEALCAA 180
           DQT  S+AAAKD DAAFFKKLDGFQPCEITELKAGTH+FAVYGDNFFKSASY +EAL AA
Sbjct: 229 DQTVNSIAAAKDADAAFFKKLDGFQPCEITELKAGTHIFAVYGDNFFKSASYSVEALSAA 288

Query: 181 PFTEEKENLRAVEAEILSKRAELSKFESEYREVLAQFTEMTSRYAQEMQAIDELLKQRNE 240
            FTEEK NLRAVEA+IL+KR E+SKFE+EYREVLAQFTEMTSRYAQEMQ IDELLKQRNE
Sbjct: 289 SFTEEKANLRAVEAQILAKRVEISKFETEYREVLAQFTEMTSRYAQEMQEIDELLKQRNE 348

Query: 241 IHASYTTAPPMKRSTSKNRSRGSPKETKEEGQVRDKKPTMRDRPKKKKWFNIHLKADKRN 300
           IHASYT APPMKRSTS++RS+G  +ETKE+GQ+RDKKP+ RDR KKKKWFNIHLK DKR 
Sbjct: 349 IHASYTIAPPMKRSTSRSRSKGPLRETKEDGQLRDKKPSNRDRTKKKKWFNIHLKVDKRK 408

Query: 301 KC 302
            C
Sbjct: 409 PC 410

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356498024|ref|XP_003517855.1| PREDICTED: chaperone protein dnaJ 16-like [Glycine max]

 Score =  505 bits (1301), Expect = e-141,   Method: Compositional matrix adjust.
 Identities = 239/302 (79%), Positives = 273/302 (90%), Gaps = 2/302 (0%)

Query: 1   MFAALFSKLGVPIKTTVSATVLEEALNGMVTVRPLLLDQHITRKVEKQCAHFYSVTITEE 60
           MFAALFSKLGVPIKTTVSATVLEEALNG+VT+RPL L  +I ++VEKQCAHFYSVTITEE
Sbjct: 111 MFAALFSKLGVPIKTTVSATVLEEALNGLVTIRPLPLGHNIAKRVEKQCAHFYSVTITEE 170

Query: 61  EARAGFVCRVQSSDKSKFKLLYFDREGTGGLSLALQEDCTKTGKVTSAGMYFLGFPVYRL 120
           EA+AGFVCRVQS DKSKFKLLYFD+E   GLSLALQED  KTGKVTSAGMYFLGFPVYRL
Sbjct: 171 EAQAGFVCRVQSPDKSKFKLLYFDQEDNSGLSLALQEDSAKTGKVTSAGMYFLGFPVYRL 230

Query: 121 DQTATSMAAAKDPDAAFFKKLDGFQPCEITELKAGTHVFAVYGDNFFKSASYMIEALCAA 180
           DQT  S+AAAKDPD +FF+KLD FQPCE+TELKAGTHVFAVYGDNFFKSA+Y IEALCAA
Sbjct: 231 DQTMNSIAAAKDPDTSFFRKLDAFQPCELTELKAGTHVFAVYGDNFFKSANYTIEALCAA 290

Query: 181 PFTEEKENLRAVEAEILSKRAELSKFESEYREVLAQFTEMTSRYAQEMQAIDELLKQRNE 240
           PF+EEKENLR +EA+ILSKRAE+SKFE+EYREVLAQF++MT+RYA EMQAIDELLK RNE
Sbjct: 291 PFSEEKENLRNIEAQILSKRAEISKFEAEYREVLAQFSDMTNRYAHEMQAIDELLKNRNE 350

Query: 241 IHASYTTAPPMKRSTSKNRSRGSPKETKEEGQVRDKKPTMRDRPKKKKWFNIHLKADKRN 300
           I ASYT+A P+KR+TS++RS+ S KE KE+GQ ++K+ T R+RPKKKKW+N+HL+ DKR 
Sbjct: 351 IQASYTSA-PLKRTTSRSRSKNSAKEAKEDGQAKEKRST-RERPKKKKWYNLHLRVDKRK 408

Query: 301 KC 302
            C
Sbjct: 409 AC 410

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224100225|ref|XP_002311794.1| predicted protein [Populus trichocarpa] gi|222851614|gb|EEE89161.1| predicted protein [Populus trichocarpa]

 Score =  504 bits (1299), Expect = e-140,   Method: Compositional matrix adjust.
 Identities = 257/302 (85%), Positives = 274/302 (90%)

Query: 1   MFAALFSKLGVPIKTTVSATVLEEALNGMVTVRPLLLDQHITRKVEKQCAHFYSVTITEE 60
           MFAALFSKLGVPIKTTVSATVLEEALNG+V + PL L   I RKVEKQCAHFYSVTITEE
Sbjct: 107 MFAALFSKLGVPIKTTVSATVLEEALNGVVDIHPLPLGLPICRKVEKQCAHFYSVTITEE 166

Query: 61  EARAGFVCRVQSSDKSKFKLLYFDREGTGGLSLALQEDCTKTGKVTSAGMYFLGFPVYRL 120
           EAR GFVCRVQSSDKSKFKLLYFD+E +GGLSLALQED  KTGKVTSAGMYFL FPVYRL
Sbjct: 167 EARDGFVCRVQSSDKSKFKLLYFDQEESGGLSLALQEDSAKTGKVTSAGMYFLCFPVYRL 226

Query: 121 DQTATSMAAAKDPDAAFFKKLDGFQPCEITELKAGTHVFAVYGDNFFKSASYMIEALCAA 180
           D T  S+AAAKD DAAFFKKLDGFQP EITELKAGTHVFAVYGDNFFKSASY IEALCAA
Sbjct: 227 DHTVNSIAAAKDADAAFFKKLDGFQPYEITELKAGTHVFAVYGDNFFKSASYSIEALCAA 286

Query: 181 PFTEEKENLRAVEAEILSKRAELSKFESEYREVLAQFTEMTSRYAQEMQAIDELLKQRNE 240
           PF EEK NLRAVEAEIL+KRAE+SKFE+EYREVLAQFTEM+SRYAQEMQAIDE L+QRNE
Sbjct: 287 PFMEEKANLRAVEAEILAKRAEISKFETEYREVLAQFTEMSSRYAQEMQAIDEFLRQRNE 346

Query: 241 IHASYTTAPPMKRSTSKNRSRGSPKETKEEGQVRDKKPTMRDRPKKKKWFNIHLKADKRN 300
           IHASYTTAPPMKRS++K R++GS +ETKE+ QVRDKKP+ RDRPKKKKWFNIHLK DKR 
Sbjct: 347 IHASYTTAPPMKRSSNKRRNKGSIRETKEDAQVRDKKPSTRDRPKKKKWFNIHLKVDKRK 406

Query: 301 KC 302
            C
Sbjct: 407 PC 408

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449452046|ref|XP_004143771.1| PREDICTED: chaperone protein dnaJ 16-like [Cucumis sativus] gi|449486531|ref|XP_004157324.1| PREDICTED: chaperone protein dnaJ 16-like [Cucumis sativus]

 Score =  503 bits (1295), Expect = e-140,   Method: Compositional matrix adjust.
 Identities = 243/302 (80%), Positives = 266/302 (88%), Gaps = 3/302 (0%)

Query: 1   MFAALFSKLGVPIKTTVSATVLEEALNGMVTVRPLLLDQHITRKVEKQCAHFYSVTITEE 60
           MFAALFSKLGVPIKTTVSATVLEEALNG+VTV PL L   I++KVEKQCAHFYSV I+EE
Sbjct: 109 MFAALFSKLGVPIKTTVSATVLEEALNGVVTVHPLPLGTPISKKVEKQCAHFYSVMISEE 168

Query: 61  EARAGFVCRVQSSDKSKFKLLYFDREGTGGLSLALQEDCTKTGKVTSAGMYFLGFPVYRL 120
           E + G VCRVQS DKSKFKLLYFDRE TGGL+LALQE+ TK GKVTSAGMYFLGFPVYRL
Sbjct: 169 ETQGGLVCRVQSPDKSKFKLLYFDREETGGLNLALQEESTKIGKVTSAGMYFLGFPVYRL 228

Query: 121 DQTATSMAAAKDPDAAFFKKLDGFQPCEITELKAGTHVFAVYGDNFFKSASYMIEALCAA 180
           DQTA SM +AKDPDAAFFKKLDGFQPCEITELKAGTHVFAVYGDNFFKS SY IEA  AA
Sbjct: 229 DQTANSMTSAKDPDAAFFKKLDGFQPCEITELKAGTHVFAVYGDNFFKSVSYTIEAFSAA 288

Query: 181 PFTEEKENLRAVEAEILSKRAELSKFESEYREVLAQFTEMTSRYAQEMQAIDELLKQRNE 240
            F EEK+NLR+VEA+IL+KR E+SKFE+EYREVLAQFTEMT RY QEMQ IDELLKQRNE
Sbjct: 289 SFAEEKDNLRSVEAQILTKRVEISKFETEYREVLAQFTEMTGRYTQEMQVIDELLKQRNE 348

Query: 241 IHASYTTAPPMKRSTSKNRSRGSPKETKEEGQVRDKKPTMRDRPKKKKWFNIHLKADKRN 300
           IHASYTT PP+KR  S++R RGS K+ KE+GQ+R++K T RDRPKKKKWFNIHLK +KR 
Sbjct: 349 IHASYTTGPPIKR--SRSRIRGSFKDAKEDGQIRERKST-RDRPKKKKWFNIHLKVEKRK 405

Query: 301 KC 302
            C
Sbjct: 406 SC 407

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356501218|ref|XP_003519423.1| PREDICTED: chaperone protein dnaJ 16-like [Glycine max]

 Score =  498 bits (1283), Expect = e-138,   Method: Compositional matrix adjust.
 Identities = 242/302 (80%), Positives = 275/302 (91%), Gaps = 2/302 (0%)

Query: 1   MFAALFSKLGVPIKTTVSATVLEEALNGMVTVRPLLLDQHITRKVEKQCAHFYSVTITEE 60
           MFAALFSKLGVPIKTTVSATVLEEALNG+VT+RPL L  +I+++VEKQCAHFYSVTITEE
Sbjct: 114 MFAALFSKLGVPIKTTVSATVLEEALNGLVTIRPLPLGHNISKRVEKQCAHFYSVTITEE 173

Query: 61  EARAGFVCRVQSSDKSKFKLLYFDREGTGGLSLALQEDCTKTGKVTSAGMYFLGFPVYRL 120
           EARAGFVCRV SSDKSKFKLLYFD+E   GLSLALQED  KTGKVTSAGMYFLGFPVYRL
Sbjct: 174 EARAGFVCRVHSSDKSKFKLLYFDQEDNSGLSLALQEDSAKTGKVTSAGMYFLGFPVYRL 233

Query: 121 DQTATSMAAAKDPDAAFFKKLDGFQPCEITELKAGTHVFAVYGDNFFKSASYMIEALCAA 180
           DQT  S+AAAKDPD +FF+KLDGFQPCE+TELKAGTHVFAVYGDNFFKSA+Y IEALCAA
Sbjct: 234 DQTMNSIAAAKDPDTSFFRKLDGFQPCELTELKAGTHVFAVYGDNFFKSANYTIEALCAA 293

Query: 181 PFTEEKENLRAVEAEILSKRAELSKFESEYREVLAQFTEMTSRYAQEMQAIDELLKQRNE 240
           PF+EEKENLR +EA+ILSKRAE+SKFE+EYREVLAQF+EMT+RYA EMQAIDELLK RNE
Sbjct: 294 PFSEEKENLRNIEAQILSKRAEISKFEAEYREVLAQFSEMTNRYAHEMQAIDELLKNRNE 353

Query: 241 IHASYTTAPPMKRSTSKNRSRGSPKETKEEGQVRDKKPTMRDRPKKKKWFNIHLKADKRN 300
           I ASYT+A P+KR+TS++RS+ S KE KE+GQ ++K+ T R+RPKKKKW+N+HL+ DKR 
Sbjct: 354 IQASYTSA-PLKRTTSRSRSKNSSKEAKEDGQAKEKRST-RERPKKKKWYNLHLRVDKRK 411

Query: 301 KC 302
            C
Sbjct: 412 AC 413

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357486161|ref|XP_003613368.1| Chaperone protein dnaJ [Medicago truncatula] gi|355514703|gb|AES96326.1| Chaperone protein dnaJ [Medicago truncatula]

 Score =  496 bits (1277), Expect = e-138,   Method: Compositional matrix adjust.
 Identities = 240/302 (79%), Positives = 272/302 (90%), Gaps = 1/302 (0%)

Query: 1   MFAALFSKLGVPIKTTVSATVLEEALNGMVTVRPLLLDQHITRKVEKQCAHFYSVTITEE 60
           MFAALFSKLGVPIKTTVSAT+LEEALNG VT+RPL L Q ++++VEKQCAHFYSVTITEE
Sbjct: 114 MFAALFSKLGVPIKTTVSATILEEALNGSVTIRPLPLGQFVSKRVEKQCAHFYSVTITEE 173

Query: 61  EARAGFVCRVQSSDKSKFKLLYFDREGTGGLSLALQEDCTKTGKVTSAGMYFLGFPVYRL 120
           EARAGFVCRVQSSDKSKFKLLYFD+E  GGLSLALQED TK GKVTSAGMYFLGFPVYRL
Sbjct: 174 EARAGFVCRVQSSDKSKFKLLYFDQEENGGLSLALQEDSTKNGKVTSAGMYFLGFPVYRL 233

Query: 121 DQTATSMAAAKDPDAAFFKKLDGFQPCEITELKAGTHVFAVYGDNFFKSASYMIEALCAA 180
           DQT  ++AA+KDPD +FFKKLDGFQPCE+TELKAGTH+FAVYGDNFFKSA+Y IE LCAA
Sbjct: 234 DQTMNTIAASKDPDTSFFKKLDGFQPCELTELKAGTHIFAVYGDNFFKSANYTIEVLCAA 293

Query: 181 PFTEEKENLRAVEAEILSKRAELSKFESEYREVLAQFTEMTSRYAQEMQAIDELLKQRNE 240
           PF+EEKENLR VE +ILSKRAE+SKFESEYREVLAQFTEMTSRYA EMQ IDELLKQRNE
Sbjct: 294 PFSEEKENLRNVETQILSKRAEISKFESEYREVLAQFTEMTSRYAHEMQTIDELLKQRNE 353

Query: 241 IHASYTTAPPMKRSTSKNRSRGSPKETKEEGQVRDKKPTMRDRPKKKKWFNIHLKADKRN 300
           IHASYT  P  + ++SK+RS+ S KE+KE+G+ R+K+ T R+RP+KKKW+N+HL+ DKR 
Sbjct: 354 IHASYTVVPLKRSNSSKSRSKTSLKESKEDGETREKRNT-RERPRKKKWYNLHLRVDKRK 412

Query: 301 KC 302
            C
Sbjct: 413 AC 414

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359473327|ref|XP_002269863.2| PREDICTED: chaperone protein dnaJ 16 [Vitis vinifera]

 Score =  488 bits (1257), Expect = e-135,   Method: Compositional matrix adjust.
 Identities = 234/292 (80%), Positives = 262/292 (89%), Gaps = 9/292 (3%)

Query: 1   MFAALFSKLGVPIKTTVSATVLEEALNGMVTVRPLLLDQHITRKVEKQCAHFYSVTITEE 60
           MFAALFSKLGVPIKTTVSATVLE+ALNG+VTVRPL L Q + +KVEKQCAHFYSVT+TEE
Sbjct: 109 MFAALFSKLGVPIKTTVSATVLEDALNGVVTVRPLTLGQPVVKKVEKQCAHFYSVTLTEE 168

Query: 61  EARAGFVCRVQSSDKSKFKLLYFDREGTGGLSLALQEDCTKTGKVTSAGMYFLGFPVYRL 120
           EA+ GFVCRVQSSDKSKFKLLYFD+E  GGL+L+LQED  +TGKVTSAGMYFLGFPVYRL
Sbjct: 169 EAQTGFVCRVQSSDKSKFKLLYFDQEEGGGLNLSLQEDSARTGKVTSAGMYFLGFPVYRL 228

Query: 121 DQTATSMAAAKDPDAAFFKKLDGFQPCEITELKAGTHVFAVYGDNFFKSASYMIEALCAA 180
           DQT  SMAAAKDPD+AFFK+LDGFQPCE+TELKAGTHVFAVYGDNFFKS SY IEALC A
Sbjct: 229 DQTVNSMAAAKDPDSAFFKRLDGFQPCEMTELKAGTHVFAVYGDNFFKSVSYTIEALCTA 288

Query: 181 PFTEEKENLRAVEAEILSKRAELSKFESEYREVLAQFTEMTSRYAQEMQAIDELLKQRNE 240
           PF EEKENLRAVEA+IL+KR ELSKFE+EYREVL QFTEMTSRYAQEMQAID+LLKQRNE
Sbjct: 289 PFAEEKENLRAVEAQILTKRVELSKFETEYREVLTQFTEMTSRYAQEMQAIDDLLKQRNE 348

Query: 241 IHASYTTAPPMKRSTSKNRSRGSPKETKEEGQVRDKKPTMRDRPKKKKWFNI 292
           IHASY++APP+KRS SKN  RG  K++K++GQV+DKKP +       +WF+I
Sbjct: 349 IHASYSSAPPIKRSRSKN--RGLSKDSKDDGQVKDKKPAL-------QWFHI 391

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|343171894|gb|AEL98651.1| chaperone protein dnaJ 16-like protein, partial [Silene latifolia]

 Score =  462 bits (1188), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 239/307 (77%), Positives = 260/307 (84%), Gaps = 7/307 (2%)

Query: 1   MFAALFSKLGVPIKTTVSATVLEEALNGMVTVRPLLLDQHITRKVEKQCAHFYSVTITEE 60
           +FAALFSKLGVPIKTTVSAT+LEEALNG VTV PL L Q + RKV+KQ AHFYSVTITE+
Sbjct: 111 VFAALFSKLGVPIKTTVSATILEEALNGRVTVSPLPLGQPLLRKVDKQSAHFYSVTITED 170

Query: 61  EARAGFVCRVQSSDKSKFKLLYFDREGTGGLSLALQEDCTKTGKVTSAGMYFLGFPVYRL 120
           +AR G VCRVQS DKSKFKLLYF+ E  GGLSLALQED TK GKV SAGMYFLGFPVY L
Sbjct: 171 DARGGLVCRVQS-DKSKFKLLYFEPEDNGGLSLALQEDSTKMGKVMSAGMYFLGFPVYHL 229

Query: 121 DQTATSMAAAKDPDAAFFKKLDGFQPCEITELKAGTHVFAVYGDNFFKSASYMIEALCAA 180
           D+T  S AAAKDPDAAFFKKLDGFQPCEITELKAGTHVFAVYGDNFFKS SY IEALC A
Sbjct: 230 DRTVNSSAAAKDPDAAFFKKLDGFQPCEITELKAGTHVFAVYGDNFFKSVSYTIEALCVA 289

Query: 181 PFTEEKENLRAVEAEILSKRAELSKFESEYREVLAQFTEMTSRYAQEMQAIDELLKQRNE 240
           P+ +EKE+LR VEA++L+KRAELSKFESEYREVL QFTEMTSRY QEMQAID LLKQRNE
Sbjct: 290 PYLKEKESLRDVEAQLLTKRAELSKFESEYREVLTQFTEMTSRYTQEMQAIDNLLKQRNE 349

Query: 241 IHASYTTAPPMKRSTSKNRSRGS--PKE---TKEEGQVRDKKPTMRDRPKKKKWFNIHLK 295
           IHASYT AP MKRS+SK+R      PKE   +KEEG  +++K T R+R KKKKWFNIHLK
Sbjct: 350 IHASYTVAPEMKRSSSKSRKTSIKEPKEEGYSKEEGPSKERKST-RERLKKKKWFNIHLK 408

Query: 296 ADKRNKC 302
            DKR  C
Sbjct: 409 VDKRKSC 415

Source: Silene latifolia

Species: Silene latifolia

Genus: Silene

Family: Caryophyllaceae

Order: Caryophyllales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	302
TAIR|locus:2032437	436	ARL1 "ARG1-like 1" [Arabidopsi	0.953	0.660	0.678	3.3e-102
TAIR|locus:2202725	414	ARL2 "ARG1-like 2" [Arabidopsi	0.980	0.714	0.598	7.5e-89
TAIR|locus:2202334	410	ARG1 "ALTERED RESPONSE TO GRAV	0.990	0.729	0.551	1.3e-84
WB|WBGene00001034	395	dnj-16 [Caenorhabditis elegans	0.850	0.650	0.318	5.9e-25

TAIR|locus:2032437 ARL1 "ARG1-like 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 1013 (361.7 bits), Expect = 3.3e-102, P = 3.3e-102
 Identities = 203/299 (67%), Positives = 237/299 (79%)

Query:     1 MFAALFSKLGVPIKTTVSATVLEEALNGMVTVRPLLLDQHITRKVEKQCAHFYSVTITEE 60
             +FAALFSKLGVPIKT+VSAT+LEEALNG V+V PL+L Q +++KVEKQCAHFY+VTI+EE
Sbjct:   109 VFAALFSKLGVPIKTSVSATILEEALNGRVSVDPLVLGQAVSKKVEKQCAHFYAVTISEE 168

Query:    61 EARAGFVCRVQSSDKSKFKLLYFDREGTGGLSLALQEDCTKTGKVTSAGMYFLGFPVYRL 120
             E  AG VCRV+SS KSKFKLLYFD+E   GLSLALQED  +TGK+TSAGMYFLGFPVYRL
Sbjct:   169 EVSAGLVCRVESSSKSKFKLLYFDQEANSGLSLALQEDSKRTGKITSAGMYFLGFPVYRL 228

Query:   121 DQTATSMXXXXXXXXXXXXXLDGFQPCEITELKAGTHVFAVYGDNFFKSASYMIEALCAA 180
             D T  SM             LDGFQ CE+TELKAGTHVFAVYGDNFFK+ SY I+ LCAA
Sbjct:   229 DHTINSMAQAKDPETAFFKKLDGFQQCEVTELKAGTHVFAVYGDNFFKNVSYTIQVLCAA 288

Query:   181 PFTEEKENLRAVEAEILSKRAELSKFESEYREVLAQFTEMTSRYAQEMQAIDELLKQRNE 240
              FT+EKE+LR+VEA+IL+KRAEL+KFE+EYREVL QFT+MTSRYAQEMQ+IDELLKQRNE
Sbjct:   289 AFTQEKEDLRSVEAQILTKRAELAKFETEYREVLVQFTDMTSRYAQEMQSIDELLKQRNE 348

Query:   241 IHASYTTAPPMKRSTSKNRSRGS-----------PKETKEEGQVRDKKPTMRDRPKKKK 288
             IH++YTT P MKRS+SKNR R S           P E +EE +  +++     R K KK
Sbjct:   349 IHSAYTTIPLMKRSSSKNRMRKSSFKKAAAKAPAPTEQEEEEEEEEEEEEESSRQKNKK 407

GO:0005634 "nucleus" evidence=ISM

GO:0006457 "protein folding" evidence=IEA;ISS

GO:0031072 "heat shock protein binding" evidence=IEA

GO:0051082 "unfolded protein binding" evidence=IEA

GO:0009737 "response to abscisic acid stimulus" evidence=IMP

TAIR|locus:2202725 ARL2 "ARG1-like 2" [Arabidopsis thaliana (taxid:3702)]

 Score = 887 (317.3 bits), Expect = 7.5e-89, P = 7.5e-89
 Identities = 182/304 (59%), Positives = 221/304 (72%)

Query:     1 MFAALFSKLGVPIKTTVSATVLEEALNGMVTVRPLLLDQHITRKVEKQCAHFYSVTITEE 60
             +FAALF+KLGV IKTTVSA +L EALNG VT  PL++ Q ++RKVEKQ AHFYSVT+TEE
Sbjct:   112 IFAALFNKLGVQIKTTVSANLLGEALNGTVTTLPLMVGQVVSRKVEKQSAHFYSVTLTEE 171

Query:    61 EARAGFVCRVQSSDKSKFKLLYFDREGTGGLSLALQEDCTKTGKVTSAGMYFLGFPVYRL 120
             EA+ G +C+V SS K+KFKLLYFD+   GGLSLALQED  KTGK+++AG+YF GFPVYR 
Sbjct:   172 EAQDGLICKVHSSAKNKFKLLYFDQVENGGLSLALQEDSRKTGKLSTAGLYFFGFPVYRF 231

Query:   121 DQTATSMXXXXXXXXXXXXXLDGFQPCEITELKAGTHVFAVYGDNFFKSASYMIEALCAA 180
             D    S              LD FQP EITELKAG+HVFAVYGDNFFKS SY +E   +A
Sbjct:   232 DHRVNSRALSRDPETGFFKRLDAFQPFEITELKAGSHVFAVYGDNFFKSVSYTLEIFSSA 291

Query:   181 PFTEEKENLRAVEAEILSKRAELSKFESEYREVLAQFTEMTSRYAQEMQAIDELLKQRNE 240
             PF  EKE+LR+ EA+I+SKR EL KFE+EY EV AQFTEM S+   E+Q IDELLK+RNE
Sbjct:   292 PFGNEKESLRSTEAQIVSKRTELLKFEAEYHEVFAQFTEMASKCTGEVQEIDELLKRRNE 351

Query:   241 IHASYTTAPPMKRSTSKNRSRGSPK-----ETKEEGQVRDKKPTMRDRPKKKKWFNIHLK 295
             I A+YT  PP K+ +SK+RS    K     E +EEG+V  ++       KKKKW+NI L+
Sbjct:   352 ICAAYTIFPPTKQGSSKSRSWSKKKSSLLMEPREEGEVAVRE---EGGVKKKKWYNIQLR 408

Query:   296 ADKR 299
              DK+
Sbjct:   409 QDKK 412

GO:0005634 "nucleus" evidence=ISM

GO:0006457 "protein folding" evidence=IEA;ISS

GO:0031072 "heat shock protein binding" evidence=IEA

GO:0051082 "unfolded protein binding" evidence=IEA

TAIR|locus:2202334 ARG1 "ALTERED RESPONSE TO GRAVITY 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 847 (303.2 bits), Expect = 1.3e-84, P = 1.3e-84
 Identities = 167/303 (55%), Positives = 222/303 (73%)

Query:     1 MFAALFSKLGVPIKTTVSATVLEEALNGMVTVRPLLLDQHITRKVEKQCAHFYSVTITEE 60
             MFAALFSKLGVPIKTTVSA VLEEA+NG VTVRPL +   ++ KVEKQCAHF+ VTI+E+
Sbjct:   106 MFAALFSKLGVPIKTTVSANVLEEAMNGTVTVRPLPIGTSVSGKVEKQCAHFFGVTISEQ 165

Query:    61 EARAGFVCRVQSSDKSKFKLLYFDREGTGGLSLALQEDCTKTGKVTSAGMYFLGFPVYRL 120
             +A +G V RV S+ +SKFKLLYF+++ +GG  LALQE+  KTGKVTSAGMYFL F VYR+
Sbjct:   166 QAESGVVVRVTSTAQSKFKLLYFEQDSSGGYGLALQEEREKTGKVTSAGMYFLHFQVYRM 225

Query:   121 DQTATSMXXXXXXXXXXXXXLDGFQPCEITELKAGTHVFAVYGDNFFKSASYMIEALCAA 180
             D T  ++             L+G QPCE++ELKAGTH+FAVYGDNFFK+ASY IEALCA 
Sbjct:   226 DTTVNALAAAKDPESAFFKRLEGLQPCEVSELKAGTHIFAVYGDNFFKTASYTIEALCAK 285

Query:   181 PFTEEKENLRAVEAEILSKRAELSKFESEYREVLAQFTEMTSRYAQEMQAIDELLKQRNE 240
              + +  E L+ +EA+IL KR EL +FE+EYR+ LA+F E+T+RY QE Q +DELLKQR+ 
Sbjct:   286 TYEDTTEKLKEIEAQILRKRNELRQFETEYRKALARFQEVTNRYTQEKQTVDELLKQRDT 345

Query:   241 IHASYTTA--PPMKRSTSKNRSRGSPKETKEEGQVRDKKPTMRDRPK-KKKWFNIHLK-A 296
             IH++++    P     ++ + S+    E+K +G    ++    +R K K+KWFN++LK +
Sbjct:   346 IHSTFSVVKTPSGNNLSNGSSSKAQGDESKGDGDSAGEEGGTENRDKSKRKWFNLNLKGS 405

Query:   297 DKR 299
             DK+
Sbjct:   406 DKK 408

GO:0006457 "protein folding" evidence=IEA;ISS

GO:0031072 "heat shock protein binding" evidence=IEA

GO:0051082 "unfolded protein binding" evidence=IEA

GO:0008092 "cytoskeletal protein binding" evidence=TAS

GO:0009638 "phototropism" evidence=IMP

GO:0009958 "positive gravitropism" evidence=IMP

WB|WBGene00001034 dnj-16 [Caenorhabditis elegans (taxid:6239)]

 Score = 284 (105.0 bits), Expect = 5.9e-25, P = 5.9e-25
 Identities = 87/273 (31%), Positives = 128/273 (46%)

Query:     1 MFAALFSKLGVPIKTTVSATVLEEALN---GM---VTVRPLLLDQHITRKVEKQCAHFYS 54
             +F ALFSKLGVPI T +   VL +A +   G    V  R L   + +T  V KQ AHFY 
Sbjct:   121 VFGALFSKLGVPIPTQIVPKVLAQARHICMGQECDVQARQLPPGETVTSSVSKQHAHFYE 180

Query:    55 VTITEEEARAGFVCRVQSSDKSKFKLLYFDREGTGGLSLALQEDCTKTGKV-TSAGMYFL 113
             + I EE  + G V  +  S  SKFKL+ FD+EG  G+ + +QE   K GK  T A M+F+
Sbjct:   181 INIQEEHRKNG-VAIICKSSSSKFKLVLFDKEG--GVRM-IQES-GKRGKAGTQADMFFV 235

Query:   114 GFPVYRLDQ-TATSMXXXXXXXXXXXXXLDGFQPCEITELKAGTHVFAVYGDNFFKSASY 172
              + V  + +  A                LD F+    T L+   H  AVYGDN+     Y
Sbjct:   236 PYNVANIQEFNAMKYHLEDKETPLAFHYLDSFEMQTATLLETRKHYIAVYGDNWISDVKY 295

Query:   173 MIEALCAAPFTEEKEN-LRAVEAEILSKRAELSKFESEYREVLAQFTEMTSRYAQEMQAI 231
              I  L   P   E+ N ++  E  I   + E+  F+ E+ E   ++ E  ++   +   I
Sbjct:   296 SITFLPVEPSAVEQLNEIQDTEKSISIIKKEMLDFQREFTEAKRKYDEAVAKLKVQDDTI 355

Query:   232 DELLKQRNEIHASYT--TAPPMKRSTSKNRSRG 262
              + L  R E++      +  P  +  S ++S G
Sbjct:   356 LKALAHREELYNEVLQKSQEPYNKKVSPSKSSG 388


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.317   0.130   0.368    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      302       289   0.00088  115 3  11 22  0.38    34
                                                     33  0.43    37


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  4
  No. of states in DFA:  600 (64 KB)
  Total size of DFA:  189 KB (2108 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  27.31u 0.21s 27.52t   Elapsed:  00:00:01
  Total cpu time:  27.31u 0.21s 27.52t   Elapsed:  00:00:01
  Start:  Sat May 11 05:40:09 2013   End:  Sat May 11 05:40:10 2013

GO:0031072 "heat shock protein binding" evidence=IEA

GO:0006457 "protein folding" evidence=IEA

GO:0051082 "unfolded protein binding" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q8VXV4	DNJ16_ARATH	No assigned EC number	0.6798	1.0	0.6926	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	GSVIVG00028910001	SubName- Full=Chromosome chr1 scaffold_46, whole genome shotgun sequence; (408 aa)
		(Vitis vinifera)
Predicted Functional Partners:
	GSVIVG00017185001	SubName- Full=Chromosome chr11 scaffold_14, whole genome shotgun sequence; (482 aa)			•						0.474
	GSVIVG00018506001	SubName- Full=Chromosome chr13 scaffold_17, whole genome shotgun sequence; (649 aa)			•						0.472
	GSVIVG00001482001	SubName- Full=Chromosome chr3 scaffold_117, whole genome shotgun sequence; (103 aa)			•						0.471
	GSVIVG00037232001	SubName- Full=Chromosome chr16 scaffold_86, whole genome shotgun sequence; (658 aa)			•						0.470
	GSVIVG00022013001	SubName- Full=Chromosome chr18 scaffold_24, whole genome shotgun sequence; (667 aa)			•						0.470
	GSVIVG00017724001	SubName- Full=Chromosome chr17 scaffold_16, whole genome shotgun sequence; (538 aa)			•						0.470
	GSVIVG00024357001	SubName- Full=Chromosome chr6 scaffold_3, whole genome shotgun sequence; (652 aa)			•						0.469
	GSVIVG00024351001	SubName- Full=Putative uncharacterized protein (Chromosome chr6 scaffold_3, whole genome shotgu [...] (648 aa)			•						0.469
	GSVIVG00018481001	SubName- Full=Chromosome chr13 scaffold_17, whole genome shotgun sequence; (650 aa)			•						0.469
	GSVIVG00006687001	SubName- Full=Chromosome chr2 scaffold_176, whole genome shotgun sequence; (667 aa)			•						0.469

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	302
KOG0713	336	consensus Molecular chaperone (DnaJ superfamily) [	100.0
KOG1690	215	consensus emp24/gp25L/p24 family of membrane traff	91.11
COG1422	201	Predicted membrane protein [Function unknown]	84.08

>KOG0713 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=100.00  E-value=6e-36  Score=285.26  Aligned_cols=225  Identities=27%  Similarity=0.297  Sum_probs=210.1

Q ss_pred             ChhhhhhccCCcccccccHHHHHHHHcCCceeEeecCccceeeeeecceeeEEEEEeCHHhhccceEEEEEeCCCCceEE
Q 022098            1 MFAALFSKLGVPIKTTVSATVLEEALNGMVTVRPLLLDQHITRKVEKQCAHFYSVTITEEEARAGFVCRVQSSDKSKFKL   80 (302)
Q Consensus         1 vfgALFskLGVPI~T~Is~kVLeeA~nG~v~v~~L~~G~~~~~kVeKQ~AhFy~v~itee~~~~GvVi~c~S~~~sKFKL   80 (302)
                      +|+|+|+++||    +|+++++++|         ++.|..|+..|++|++|||.++++++.+.+||++.|+++.+++||+
T Consensus       102 ~f~~~f~dfg~----~~~g~~~~e~---------~~~g~~V~~~~e~~~~h~y~~~~~e~~r~~~v~~~~~g~~~~~~~~  168 (336)
T KOG0713|consen  102 IFSAFFGDFGV----TVGGNPLEEA---------LPKGSDVSSDLEKQLEHFYMGNFVEEVREKGVYKPAPGTRKCNCRL  168 (336)
T ss_pred             hHHHhhccccc----ccCCCcccCC---------CCCCceEEeehhhchhhhhcccHHHHHhccCceeecCcccccCChh
Confidence            68999999999    8999999999         8899999999999999999999999999999999999999999999


Q ss_pred             EEeeccCCCcceEEEeeeccccCcceeeeeeeecceeeecccccchhhhcCCCChhhhhcccCccccceeeccCCceEEE
Q 022098           81 LYFDREGTGGLSLALQEDCTKTGKVTSAGMYFLGFPVYRLDQTATSMAAAKDPDAAFFKKLDGFQPCEITELKAGTHVFA  160 (302)
Q Consensus        81 l~FD~e~~Gg~~l~lQEdS~K~~k~T~A~myFlpf~vy~l~~~~n~~~~~kd~~~a~F~~Ld~fq~~e~~~L~pG~Hlf~  160 (302)
                      ++|+++++||+...|||..-++++.                   ..+....++...+|++|+.++++++..++.+.|++|
T Consensus       169 ~~~~~~~~~g~~~~~q~~~~~~~~~-------------------~k~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~  229 (336)
T KOG0713|consen  169 EMFTQQEGPGRFQMLQEAVCDECPN-------------------VKLVLEEDPLEVEFERGDADGPEEIFELEGEPHIDG  229 (336)
T ss_pred             hheeeccCCChhhhhhhhhhccCCc-------------------cceeecCCceeeeeeecccCCceeeeeccCCcceec
Confidence            9999999988888899876666655                   333456888889999999999999999999999999


Q ss_pred             EecCcccccceEEEEEEEcCCChhhhhhHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Q 022098          161 VYGDNFFKSASYMIEALCAAPFTEEKENLRAVEAEILSKRAELSKFESEYREVLAQFTEMTSRYAQEMQAIDELLKQRNE  240 (302)
Q Consensus       161 VYGDNwf~~~~ytie~l~~~~~~~~~~~I~~vE~~l~~KK~EL~~Fe~EY~eak~kf~ev~~r~~~e~~~i~~LL~~Re~  240 (302)
                      |||||||+.+.|++..++..+.+.+.+.+.++|++|+.++.||..|+.||++|++++.++..++..+.++++.+|+.|+.
T Consensus       230 ~~gD~~f~~~~y~~~~~~~k~~~~~~n~~~sl~~~~v~~~~e~~~~d~~~~~~~r~~~~~p~~~~~~~~~~~~~l~~~~~  309 (336)
T KOG0713|consen  230 VPGDLFFKIVSYTHPRFERKGDDLYTNVTISLEAALVGFEMEILHLDGHYVEVSRKKITWPGARTRKKGEGMPLLKNRNE  309 (336)
T ss_pred             ccCCceeeeEEecccceecCccchhhHHHHHHHHHHHHHHHHhhccchhhhhhhhhhccccchhhhhhhccchhhhccch
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HhhhhccCCCCCCcCCC
Q 022098          241 IHASYTTAPPMKRSTSK  257 (302)
Q Consensus       241 iy~s~~~~~~~~~~~~~  257 (302)
                      +++.|++.++....++.
T Consensus       310 ~~~~~~t~~~~~~~~~~  326 (336)
T KOG0713|consen  310 KGNLYVTFDVEFPKSSL  326 (336)
T ss_pred             hcceeEEecccCccccc
Confidence            99999999877654333

>KOG1690 consensus emp24/gp25L/p24 family of membrane trafficking proteins [Intracellular trafficking, secretion, and vesicular transport]

Probab=91.11  E-value=1.5  Score=41.08  Aligned_cols=29  Identities=21%  Similarity=0.417  Sum_probs=24.0

Q ss_pred             ceeeccCCceEEEEec--CcccccceEEEEE
Q 022098          148 EITELKAGTHVFAVYG--DNFFKSASYMIEA  176 (302)
Q Consensus       148 e~~~L~pG~Hlf~VYG--DNwf~~~~ytie~  176 (302)
                      +-+.+.||+|-||+|-  ++||.+++-.+.+
T Consensus        93 tFta~~~GeH~IC~~s~s~awf~~aklRvhl  123 (215)
T KOG1690|consen   93 TFTALTPGEHRICIQSNSTAWFNGAKLRVHL  123 (215)
T ss_pred             EEEccCCCceEEEEecccchhhccceEEEEE
Confidence            4478889999999983  5999999877666

>COG1422 Predicted membrane protein [Function unknown]

Probab=84.08  E-value=2.3  Score=39.54  Aligned_cols=40  Identities=10%  Similarity=0.213  Sum_probs=33.4

Q ss_pred             HHHHHHHHHHHhhHHHHHHHHH-HHHHHHHHHHHhHHHHHH
Q 022098          194 AEILSKRAELSKFESEYREVLA-QFTEMTSRYAQEMQAIDE  233 (302)
Q Consensus       194 ~~l~~KK~EL~~Fe~EY~eak~-kf~ev~~r~~~e~~~i~~  233 (302)
                      +.|.+.+++++.||.||+||++ ..+++++|++++..++-+
T Consensus        72 ekm~~~qk~m~efq~e~~eA~~~~d~~~lkkLq~~qmem~~  112 (201)
T COG1422          72 EKMKELQKMMKEFQKEFREAQESGDMKKLKKLQEKQMEMMD  112 (201)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHH
Confidence            3577889999999999999987 588899999988777643

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	302
3jqw_A	121	COLH protein, collagenase; beta-barrel, dual calci	94.03
1nqj_A	119	Class 1 collagenase; beta sandwich, metalloproteas	84.94

>3jqw_A COLH protein, collagenase; beta-barrel, dual calcium site, cell adhesion; 2.00A {Clostridium histolyticum} SCOP: b.23.2.0 PDB: 3jqx_A

Probab=94.03  E-value=0.16  Score=41.72  Aligned_cols=57  Identities=7%  Similarity=0.163  Sum_probs=47.0

Q ss_pred             cCCceeEeecC-ccceeeeeecce-eeEEEEEeCHHhhccceEEEEEeCCCCceEEEEeecc
Q 022098           27 NGMVTVRPLLL-DQHITRKVEKQC-AHFYSVTITEEEARAGFVCRVQSSDKSKFKLLYFDRE   86 (302)
Q Consensus        27 nG~v~v~~L~~-G~~~~~kVeKQ~-AhFy~v~itee~~~~GvVi~c~S~~~sKFKLl~FD~e   86 (302)
                      |..-++.||.+ |+.+.|.+..+. ..+|+++|+..   .-|=|.+.+..+..|..++|+.+
T Consensus        13 nsf~~An~l~~~n~~v~G~l~~~dd~D~y~F~V~~~---g~v~I~l~~~~~~~~~w~ly~~~   71 (121)
T 3jqw_A           13 NSKETASGPIVPGIPVSGTIENTSDQDYFYFDVITP---GEVKIDINKLGYGGATWVVYDEN   71 (121)
T ss_dssp             CSGGGCBCCCCTTSCEEEEECSTTCCEEEEEEESSC---EEEEEEEEECSSSEEEEEEECTT
T ss_pred             CCHHHccccccCCcEEEEEeCCcCCeeEEEEEeCCC---CeEEEEEEecCCCcEEEEEEeCC
Confidence            33457888999 999999999665 99999999976   44667788888888999998887

>1nqj_A Class 1 collagenase; beta sandwich, metalloprotease, collagen-binding domain, lithium, chlorine, hydrolase; 1.00A {Clostridium histolyticum} SCOP: b.23.2.1 PDB: 2o8o_A 1nqd_A

Probab=84.94  E-value=3.6  Score=33.68  Aligned_cols=86  Identities=15%  Similarity=0.171  Sum_probs=57.9

Q ss_pred             HcCCceeEeecC-ccceeeeeecce-eeEEEEEeCHHhhccceEEEEEeCCCCceEEEEeeccC--CCcceEEEeeeccc
Q 022098           26 LNGMVTVRPLLL-DQHITRKVEKQC-AHFYSVTITEEEARAGFVCRVQSSDKSKFKLLYFDREG--TGGLSLALQEDCTK  101 (302)
Q Consensus        26 ~nG~v~v~~L~~-G~~~~~kVeKQ~-AhFy~v~itee~~~~GvVi~c~S~~~sKFKLl~FD~e~--~Gg~~l~lQEdS~K  101 (302)
                      .|+.-++.||.+ |+.+.|.+..+. ..+|+++|++.   .=|-|.+.+....-+-.++|+.+.  | -+.- -+.+-.+
T Consensus        14 Nnsf~~An~l~~~n~~v~G~l~~~D~~D~y~f~v~~~---g~v~I~l~~~~~~~~~w~ly~~~dl~n-yv~y-~~~~gn~   88 (119)
T 1nqj_A           14 NDSSDKATVIPNFNTTMQGSLLGDDSRDYYSFEVKEE---GEVNIELDKKDEFGVTWTLHPESNIND-RITY-GQVDGNK   88 (119)
T ss_dssp             ------CEECCSSSCCEEEEECTTCCEEEEEEEESSC---EEEEEEEEESSSSEEEEEEEECC-----CCEE-CEEETTE
T ss_pred             CCCHHHcceeccCCeEEEEEeCCCCCcEEEEEECCCC---CeEEEEEEeCCCCCEEEEEEccCCCcc-ceEE-eecCCCc
Confidence            456678899999 999999999977 99999999954   446688888888889999999874  2 1111 1333222


Q ss_pred             c-Ccce-eeeeeeecce
Q 022098          102 T-GKVT-SAGMYFLGFP  116 (302)
Q Consensus       102 ~-~k~T-~A~myFlpf~  116 (302)
                      . +++. .+|-|+|-..
T Consensus        89 ~~~~~~~~pGkYYl~Vy  105 (119)
T 1nqj_A           89 VSNKVKLRPGKYYLLVY  105 (119)
T ss_dssp             EEEEEEECSEEEEEEEE
T ss_pred             EEEEEEcCCcEEEEEEE
Confidence            2 3333 6999999543

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	302
d1nqja_	101	Class 1 collagenase {Bacteria (Clostridium histoly	90.71

>d1nqja_ b.23.2.1 (A:) Class 1 collagenase {Bacteria (Clostridium histolyticum) [TaxId: 1498]}

class: All beta proteins
fold: CUB-like
superfamily: Collagen-binding domain
family: Collagen-binding domain
domain: Class 1 collagenase
species: Bacteria (Clostridium histolyticum) [TaxId: 1498]

Probab=90.71  E-value=0.55  Score=33.91  Aligned_cols=81  Identities=11%  Similarity=0.136  Sum_probs=57.2

Q ss_pred             eEeec-Cccceeeeeecce-eeEEEEEeCHHhhccceEEEEEeCCCCceEEEEeeccCCCcceEEEeeeccccCc-----
Q 022098           32 VRPLL-LDQHITRKVEKQC-AHFYSVTITEEEARAGFVCRVQSSDKSKFKLLYFDREGTGGLSLALQEDCTKTGK-----  104 (302)
Q Consensus        32 v~~L~-~G~~~~~kVeKQ~-AhFy~v~itee~~~~GvVi~c~S~~~sKFKLl~FD~e~~Gg~~l~lQEdS~K~~k-----  104 (302)
                      +.+|| +...+.|.+.... ..+|++++.+   ...|.|.+..+...-|=|.++|.+  |. .++....+.-...     
T Consensus         2 at~ip~~n~ti~G~l~~~dd~D~y~f~l~~---~~~v~i~l~~~~~~d~~l~lyd~~--g~-~~~~~~~~~~~~~~~~~~   75 (101)
T d1nqja_           2 ATVIPNFNTTMQGSLLGDDSRDYYSFEVKE---EGEVNIELDKKDEFGVTWTLHPES--NI-NDRITYGQVDGNKVSNKV   75 (101)
T ss_dssp             CEECCSSSCCEEEEECTTCCEEEEEEEESS---CEEEEEEEEESSSSEEEEEEEECC-------CCEECEEETTEEEEEE
T ss_pred             ccCcCCCCCcEEEEeCCCCcceEEEEECCC---CCEEEEEEeCCccCCeEEEEEcCC--CC-EEEEecCCCCCceEEEEE
Confidence            46777 8899999997776 9999999975   567889999888778999999998  33 2323333222111     


Q ss_pred             ceeeeeeeecceee
Q 022098          105 VTSAGMYFLGFPVY  118 (302)
Q Consensus       105 ~T~A~myFlpf~vy  118 (302)
                      .-.+|-||+-...|
T Consensus        76 ~~~~GtYyi~V~~~   89 (101)
T d1nqja_          76 KLRPGKYYLLVYKY   89 (101)
T ss_dssp             EECSEEEEEEEEEE
T ss_pred             ecCCeEEEEEEEec
Confidence            13789999876544