Citrus Sinensis ID: 022152
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
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Close Homologs for Annotation Transfer
Close Homologs in the Non-Redundant Database Detected by BLAST 
Original result of BLAST against Nonredundant Database
GI ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Q cover ![]() |
H cover ![]() |
Identity ![]() |
E-value ![]() |
| Query | 302 | ||||||
| 225447131 | 300 | PREDICTED: uncharacterized protein LOC10 | 0.990 | 0.996 | 0.837 | 1e-145 | |
| 449466073 | 301 | PREDICTED: uncharacterized protein LOC10 | 0.990 | 0.993 | 0.834 | 1e-140 | |
| 224068945 | 292 | predicted protein [Populus trichocarpa] | 0.960 | 0.993 | 0.811 | 1e-133 | |
| 255568721 | 280 | conserved hypothetical protein [Ricinus | 0.920 | 0.992 | 0.846 | 1e-133 | |
| 297739208 | 274 | unnamed protein product [Vitis vinifera] | 0.903 | 0.996 | 0.787 | 1e-133 | |
| 224129026 | 292 | predicted protein [Populus trichocarpa] | 0.960 | 0.993 | 0.781 | 1e-128 | |
| 297789866 | 292 | hypothetical protein ARALYDRAFT_497273 [ | 0.956 | 0.989 | 0.787 | 1e-126 | |
| 297826747 | 291 | hypothetical protein ARALYDRAFT_345055 [ | 0.953 | 0.989 | 0.780 | 1e-126 | |
| 356575889 | 273 | PREDICTED: uncharacterized protein LOC10 | 0.880 | 0.974 | 0.828 | 1e-125 | |
| 297801306 | 1370 | hypothetical protein ARALYDRAFT_355725 [ | 0.827 | 0.182 | 0.862 | 1e-125 |
| >gi|225447131|ref|XP_002274696.1| PREDICTED: uncharacterized protein LOC100244748 [Vitis vinifera] | Back alignment and taxonomy information |
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Score = 520 bits (1338), Expect = e-145, Method: Compositional matrix adjust.
Identities = 252/301 (83%), Positives = 274/301 (91%), Gaps = 2/301 (0%)
Query: 1 MSMGSDTGSTWVGKKPLRRIGGMSDALSIAADLGFSVAPPPSQEELQNLCANGEKGDDLI 60
MSMGSDT +WVGKKPLRR+GGMSDALSIAADLGFSV PPPSQEELQNL + GEKGDDLI
Sbjct: 1 MSMGSDT--SWVGKKPLRRLGGMSDALSIAADLGFSVNPPPSQEELQNLSSTGEKGDDLI 58
Query: 61 RVLRELTAVQRKIADLQVELQGRKDDKNVAHLTHVSEMQKKIETLSRITTILKDVIQNKD 120
RVLRELT VQRKIADLQVELQGRK+DKNVAHLTHVSEM+KK ETL+RIT ILKDVIQNKD
Sbjct: 59 RVLRELTTVQRKIADLQVELQGRKEDKNVAHLTHVSEMEKKCETLARITAILKDVIQNKD 118
Query: 121 RIIARLQQPYSLDCIPVEAEYQKQFSELLMKAASDYGALTASVADFQWSQSFKEPPSIWG 180
RIIARLQQPYSLDCIPVEAE+QKQFSELLMKAASDYGALTASVADFQW+Q+FKEPPS+WG
Sbjct: 119 RIIARLQQPYSLDCIPVEAEFQKQFSELLMKAASDYGALTASVADFQWTQNFKEPPSVWG 178
Query: 181 EMLRPIPVALASCTRFFEAMSAMRESFATLQHLRVGDSASSLPITPDNNSSQRVPGGSDC 240
EMLRPIPVALASCTRFFEAMSAMRESFATLQ+LRVG+SASSLP TP + QR+PG S+C
Sbjct: 179 EMLRPIPVALASCTRFFEAMSAMRESFATLQNLRVGNSASSLPTTPAKDPYQRIPGDSEC 238
Query: 241 VTPPPWTNESSLDDLVIRNLRRQELGRQEAEDAISEVSDLSQSDGTNNRRLSWPLQVKKS 300
VTPPPW NE S DDL +R++RRQE RQE ED SEV +L+Q DGT++RRLSWP VKKS
Sbjct: 239 VTPPPWRNEPSFDDLAVRSVRRQENERQEVEDENSEVGELNQVDGTSHRRLSWPPSVKKS 298
Query: 301 G 301
G
Sbjct: 299 G 299
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Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449466073|ref|XP_004150751.1| PREDICTED: uncharacterized protein LOC101204893 [Cucumis sativus] | Back alignment and taxonomy information |
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| >gi|224068945|ref|XP_002302863.1| predicted protein [Populus trichocarpa] gi|222844589|gb|EEE82136.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
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| >gi|255568721|ref|XP_002525332.1| conserved hypothetical protein [Ricinus communis] gi|223535391|gb|EEF37065.1| conserved hypothetical protein [Ricinus communis] | Back alignment and taxonomy information |
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| >gi|297739208|emb|CBI28859.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
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| >gi|224129026|ref|XP_002320482.1| predicted protein [Populus trichocarpa] gi|222861255|gb|EEE98797.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
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| >gi|297789866|ref|XP_002862858.1| hypothetical protein ARALYDRAFT_497273 [Arabidopsis lyrata subsp. lyrata] gi|297308610|gb|EFH39116.1| hypothetical protein ARALYDRAFT_497273 [Arabidopsis lyrata subsp. lyrata] | Back alignment and taxonomy information |
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| >gi|297826747|ref|XP_002881256.1| hypothetical protein ARALYDRAFT_345055 [Arabidopsis lyrata subsp. lyrata] gi|297327095|gb|EFH57515.1| hypothetical protein ARALYDRAFT_345055 [Arabidopsis lyrata subsp. lyrata] | Back alignment and taxonomy information |
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| >gi|356575889|ref|XP_003556069.1| PREDICTED: uncharacterized protein LOC100816472 [Glycine max] | Back alignment and taxonomy information |
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| >gi|297801306|ref|XP_002868537.1| hypothetical protein ARALYDRAFT_355725 [Arabidopsis lyrata subsp. lyrata] gi|297314373|gb|EFH44796.1| hypothetical protein ARALYDRAFT_355725 [Arabidopsis lyrata subsp. lyrata] | Back alignment and taxonomy information |
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Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST 
Original result of BLAST against Gene Ontology (AMIGO)
ID ![]() |
Alignment graph ![]() |
Length ![]() |
Definition ![]() |
Q cover ![]() |
H cover ![]() |
Identity ![]() |
E-value ![]() |
| Query | 302 | ||||||
| TAIR|locus:2059390 | 296 | AUG2 "augmin subunit 2" [Arabi | 0.970 | 0.989 | 0.780 | 3e-117 |
| TAIR|locus:2059390 AUG2 "augmin subunit 2" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
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Score = 1155 (411.6 bits), Expect = 3.0e-117, P = 3.0e-117
Identities = 235/301 (78%), Positives = 252/301 (83%)
Query: 1 MSMGSDTGSTWVGKKPLRRIGGMSDALSIAADLGFSVAPPPSQEELQNLCA-NGEKGDDL 59
MSMG DT TWVGKKP+RRIGG+SDALSIA+DLGF+VAPPPSQEELQ+ + NGE+GDDL
Sbjct: 1 MSMGGDT--TWVGKKPIRRIGGLSDALSIASDLGFAVAPPPSQEELQSFASSNGERGDDL 58
Query: 60 IRVLRELTAVQRKIADLQVELQGRKDDKNVAHLTHVSEMQKKIETLSRITTILKDVIQNK 119
IRVLREL+ VQRKIADLQVELQGRKDDKNVAHLTHV EMQKKIETLSRIT ILKDVIQNK
Sbjct: 59 IRVLRELSVVQRKIADLQVELQGRKDDKNVAHLTHVGEMQKKIETLSRITQILKDVIQNK 118
Query: 120 DRIIARLQQPYSLDCIPVEAEYQKQFSELLMKAASDYGALTASVADFQWSQSFKEPPSIW 179
DRIIARLQQPYSLDCIPVEAEYQKQFSELLMKAASDYGALTASV+DFQWSQ+FKEPPS+W
Sbjct: 119 DRIIARLQQPYSLDCIPVEAEYQKQFSELLMKAASDYGALTASVSDFQWSQNFKEPPSVW 178
Query: 180 GEMLRPIPVALASCTRFFEAMSAMRESFATLQHLRVGDSASSLPITPDNNSSQRVPGGSD 239
GEMLRPIPVALASCTRFFEAMSAMRESFATLQ LRVG+SA SLP TP N + SD
Sbjct: 179 GEMLRPIPVALASCTRFFEAMSAMRESFATLQELRVGNSAVSLPTTPGGN--EMTHRDSD 236
Query: 240 CVTPPPWTNESSLDDLVIRNLRRQELGRQEAEDAISEVSDLSQSDGTNNRRLSWPLQVKK 299
CVTPP ESS DDL + RRQ + E E+ E D + NRRLSWP VKK
Sbjct: 237 CVTPPQGRIESSFDDLAVHKTRRQNNDQNEEEEEEEEEED---GNNNGNRRLSWPPSVKK 293
Query: 300 S 300
S
Sbjct: 294 S 294
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.314 0.129 0.372 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 302 302 0.00097 115 3 11 23 0.44 34
33 0.45 37
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 1
No. of states in DFA: 615 (65 KB)
Total size of DFA: 204 KB (2114 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 29.22u 0.12s 29.34t Elapsed: 00:00:01
Total cpu time: 29.22u 0.12s 29.34t Elapsed: 00:00:01
Start: Sat May 11 08:04:46 2013 End: Sat May 11 08:04:47 2013
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Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Ezypred Server 
Original result from Ezypred Server
Fail to connect to Ezypred Server
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING 
Original result from the STRING server
Fail to connect to STRING server
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST 
Original result of RPS-BLAST against CDD database part I
Conserved Domains Detected by HHsearch 
Original result of HHsearch against CDD database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Probability ![]() |
| Query | 302 | |||
| PF15003 | 277 | HAUS2: HAUS augmin-like complex subunit 2 | 100.0 | |
| PF15003 | 277 | HAUS2: HAUS augmin-like complex subunit 2 | 81.74 |
| >PF15003 HAUS2: HAUS augmin-like complex subunit 2 | Back alignment and domain information |
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Probab=100.00 E-value=5.1e-92 Score=651.29 Aligned_cols=270 Identities=36% Similarity=0.546 Sum_probs=259.2
Q ss_pred CCCCCCcchhhccchHHHHHHHHhhCCCCCCCCCHHHHHHHhhCCCCchH-----HHHHHHHHHHHHHHHhhcccceeee
Q 022152 9 STWVGKKPLRRIGGMSDALSIAADLGFSVAPPPSQEELQNLCANGEKGDD-----LIRVLRELTAVQRKIADLQVELQGR 83 (302)
Q Consensus 9 ~~w~~~~~~~~lG~~~~~Lsia~~Lgh~vas~~sqE~lq~~~~~~a~s~~-----l~s~LrQIT~lQ~eLdq~nLEIelL 83 (302)
|||+|++|++++|||.++++||+++||.. |+ +.+++.++||+ +|++|+|||++|++|||+|+|||++
T Consensus 2 npW~p~~~~~~~agl~l~~~vAsg~~~~~-------~l-~~s~~~~~~f~~~s~~l~s~L~QIt~iQaeI~q~nlEielL 73 (277)
T PF15003_consen 2 NPWDPASPAPRAAGLLLALCVASGLGTQE-------ML-DISQKEAPCFSEKSSDLFSRLRQITNIQAEIDQLNLEIELL 73 (277)
T ss_pred CCCCCCCcCCchHHHHHHHHHHhccCccc-------cc-CcccccchhhhhhhhHHHHHHHHHHHHHHHHHhhhHHHHHH
Confidence 69999999999999999999999988765 45 55667777887 9999999999999999999999999
Q ss_pred ccccccccccChhHHHHHHHHHHHHHHHHHHHhhchHHHHHHHhccccCCCcchhhhhhHHHHHHHHHHHhHHHHHHHhH
Q 022152 84 KDDKNVAHLTHVSEMQKKIETLSRITTILKDVIQNKDRIIARLQQPYSLDCIPVEAEYQKQFSELLMKAASDYGALTASV 163 (302)
Q Consensus 84 KlDKeTADltH~~~L~kK~e~LQ~mnsHLeaVLkeK~~LrqRLqkP~~~enLPVEA~yHR~vVeLL~lavsfIe~Lee~L 163 (302)
++||+||||+|++||++||++||+||+||++||+||++||+|||||||++||||||+|||||||||++||+||++|+++|
T Consensus 74 kleKeTADltH~~~L~~K~~~Lq~m~shLe~VLk~K~~Lr~RLqkP~~qe~LPVEA~yHr~vVeLL~laa~fi~~Le~~L 153 (277)
T PF15003_consen 74 KLEKETADLTHPDYLAEKCEALQSMNSHLEAVLKEKDRLRQRLQKPYCQENLPVEAQYHRYVVELLELAASFIEKLEEHL 153 (277)
T ss_pred HhhcchHhhhCHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhhhhhcCccchhhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhcccccCCCCcccccccchhhhhhhhhHHHHHHHHHHHHHHHHHHhhhcCCCCcccCCCCCCCCCCCCCCCCccCC
Q 022152 164 ADFQWSQSFKEPPSIWGEMLRPIPVALASCTRFFEAMSAMRESFATLQHLRVGDSASSLPITPDNNSSQRVPGGSDCVTP 243 (302)
Q Consensus 164 e~I~W~snF~~~~~~~~~~Lr~Ip~alasc~~~~ea~s~~r~~~a~l~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 243 (302)
++|+|+++|++++++|+++|++||+.+|+|++|||++.+||++++.+|.+|+|.++...|.+| ++|+||+|
T Consensus 154 etIrwip~~~~~~~~m~~aL~ki~~lvae~E~l~e~ilkwRe~~ke~~~~~~~~~~~~~~~~~--------~~d~~~~t- 224 (277)
T PF15003_consen 154 ETIRWIPNFDENPSNMDKALAKIDALVAECEELAEQILKWREQQKEVSSYIPKMLAEENPLHK--------PHDSDCIT- 224 (277)
T ss_pred HHHhccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccccccCCc--------CCCCCccC-
Confidence 999999999999999999999999999999999999999999999999999999999888888 59999999
Q ss_pred CCCCCCCCchhHHHHHHHHhhhhhhhhhhhhhhhccccCCCCCCCccccCCCccccC
Q 022152 244 PPWTNESSLDDLVIRNLRRQELGRQEAEDAISEVSDLSQSDGTNNRRLSWPLQVKKS 300 (302)
Q Consensus 244 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 300 (302)
|||++|++||||+||++|||+++++++++++|++| ||++|||||||||||++
T Consensus 225 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~ 276 (277)
T PF15003_consen 225 PPWRAESSFDDLAIRSRRRQNNDQQEEDDEESEDG-----DDNSQRRLSWPPSVKTS 276 (277)
T ss_pred CccccCCchhHHHHhhhHHHHHHhhccccCcCCCC-----cccccccccCCCccCCC
Confidence 89999999999999999999999998888888887 49999999999999986
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| >PF15003 HAUS2: HAUS augmin-like complex subunit 2 | Back alignment and domain information |
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Homologous Structure Templates
Structure Templates Detected by BLAST 
Original result of BLAST against Protein Data Bank
No homologous structure with e-value below 0.005
Structure Templates Detected by RPS-BLAST 
Original result of RPS-BLAST against PDB70 database
No hit with e-value below 0.005
Structure Templates Detected by HHsearch 
Original result of HHsearch against PDB70 database
No hit with probability above 80.00
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST 
Original result of RPS-BLAST against SCOP70(version1.75) database
No hit with e-value below 0.005
Homologous Domains Detected by HHsearch 
Original result of HHsearch against SCOP70(version1.75) database
No hit with probability above 80.00