Citrus Sinensis ID: 022175

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-
MVRAFKMKGQKRKKKRDEKYDREEEEEEKEEVEEEELNDSGKRAKLEKTSQNDNKKGEEDGQEEKDVVVHEMEGIPIAPSDQNTKRPGVIFVLEKASLEVAKVGKSYQILNSDDHSNFLRRNNKNPADYRPDIVHQALLSILDSRLTKAGRLQAVYVRTDKGVLFEVKPHVRLPRTYKRFAGIMLQLLQKLSITAVGKREKLLRVIKNPVTQYLPVNSRKIGFSYSSEKLVKMRNYVASISDDDNLVFVVCSEVISAYIYGDLFFHIYILSDINLYFSCLSFHVRLVQWHMGKSIVIIQMI
ccccccccccccccccccccccHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccEEEEEEccccEEEEEccccccccccHHHHHHHHHcccccccccccHHHHHHHHHHccHHHHcccccEEEEEEcccEEEEEcccccccccHHHHHHHHHHHHHHccccccccccccEEEEEcccccccccccEEEEEEccccccccHHHHHHHccccccEEEEEcEEEcccccccccEEEEEEEEccccHHHHHHHHHHHHHHHcccEEEEEEEc
ccccccEccccHHHHccccccHHHHHcccccccHHHcccccccccHHHHccccccccccccccccccccHcccccccccccccccccEEEEEEEccEEEEEEccccEEEEccHHHHHHHHHccccHHHccccHHHHHHHHHHccHHHHccccEEEEEEEcccEEEEEcccccccccHHHHHHHHHHHHHHccccccccccEHHEEEcccHHHccccccEEEEEEEcccccccHHHHHHHccccccEEEEEEcccccccccccccccEEEEccccccHHHcccEccHHEEHcccEEEEEEEc
mvrafkmkgqkrkkkrdekydreeeEEEKEEVEEEElndsgkraklektsqndnkkgeedgqeeKDVVVHEmegipiapsdqntkrpgVIFVLEKASLEVAKVgksyqilnsddhsnflrrnnknpadyrpdIVHQALLSILDSRLTKAGRLQAVYVRtdkgvlfevkphvrlprtYKRFAGIMLQLLQKLSITAVGKREKLLRVIKnpvtqylpvnsrkigfsysSEKLVKMRNYVasisdddnlVFVVCSEVISAYIYGDLFFHIYILSDINLYFSCLSFHVRLVQWHMGKSIVIIQMI
mvrafkmkgqkrkkkrdekydreeeeeekeeveeeelndsgkraklektsqndnkkgeedgqeekDVVVHEMEGipiapsdqntkrpGVIFVLEKASLEVAKVGksyqilnsddhsnFLRRNNKNPADYRPDIVHQALLSILDSRLTKAGRLQAVyvrtdkgvlfevkphvrlprTYKRFAGIMLQLLQKLSITAVGKREKLLrviknpvtqylpvnsrkigFSYSSEKLVKMRNYVASISDDDNLVFVVCSEVISAYIYGDLFFHIYILSDINLYFSCLSFHVRLVQWHMGKSIVIIQMI
MVRAFKMKGQkrkkkrdekydreeeeeekeeveeeeLNDSGKRAKLEKTSQNDNkkgeedgqeekdvvvHEMEGIPIAPSDQNTKRPGVIFVLEKASLEVAKVGKSYQILNSDDHSNFLRRNNKNPADYRPDIVHQALLSILDSRLTKAGRLQAVYVRTDKGVLFEVKPHVRLPRTYKRFAGIMLQLLQKLSITAVGKREKLLRVIKNPVTQYLPVNSRKIGFSYSSEKLVKMRNYVASISDDDNLVFVVCSEVISAYIYGDLFFHIYILSDINLYFSCLSFHVRLVQWHMGKSIVIIQMI
***************************************************************************************GVIFVLEKASLEVAKVGKSYQILNS*****F*********DYRPDIVHQALLSILDSRLTKAGRLQAVYVRTDKGVLFEVKPHVRLPRTYKRFAGIMLQLLQKLSITAVGKREKLLRVIKNPVTQYLPVNSRKIGFSYSSEKLVKMRNYVASISDDDNLVFVVCSEVISAYIYGDLFFHIYILSDINLYFSCLSFHVRLVQWHMGKSIVIIQ**
*****************************************************************************************IFVLEKASLEVAKVGKSYQILNSDDHSNFLRRNNKNPADYRPDIVHQALLSILDSRLTKAGRLQAVYVRTDKGVLFEVKPHVRLPRTYKRFAGIMLQLLQ*************LRVIKNPVTQYLPVNSRKIGFSYSSEKLVKMRNYVASISDDDNLVFVVCSEVISAYIYGDLFFHIYILSDINLYFSCLSFHVRLVQWHMGKSIVIIQMI
*****************************************KRAKL*******************DVVVHEMEGIPIAPSDQNTKRPGVIFVLEKASLEVAKVGKSYQILNSDDHSNFLRRNNKNPADYRPDIVHQALLSILDSRLTKAGRLQAVYVRTDKGVLFEVKPHVRLPRTYKRFAGIMLQLLQKLSITAVGKREKLLRVIKNPVTQYLPVNSRKIGFSYSSEKLVKMRNYVASISDDDNLVFVVCSEVISAYIYGDLFFHIYILSDINLYFSCLSFHVRLVQWHMGKSIVIIQMI
************************************************************************EGIPI******TKRPGVIFVLEKASLEVAKVGKSYQILNSDDHSNFLRRNNKNPADYRPDIVHQALLSILDSRLTKAGRLQAVYVRTDKGVLFEVKPHVRLPRTYKRFAGIMLQLLQKLSITAVGKREKLLRVIKNPVTQYLPVNSRKIGFSYSSEKLVKMRNYVASISDDDNLVFVVCSEVISAYIYGDLFFHIYILSDINLYFSCLSFHVRLVQWHMGKSIVIIQMI
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MVRAFKMKGQKRxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxRAKLEKTSQNDNKKGEEDGQEEKDVVVHEMEGIPIAPSDQNTKRPGVIFVLEKASLEVAKVGKSYQILNSDDHSNFLRRNNKNPADYRPDIVHQALLSILDSRLTKAGRLQAVYVRTDKGVLFEVKPHVRLPRTYKRFAGIMLQLLQKLSITAVGKREKLLRVIKNPVTQYLPVNSRKIGFSYSSEKLVKMRNYVASISDDDNLVFVVCSEVISAYIYGDLFFHIYILSDINLYFSCLSFHVRLVQWHMGKSIVIIQMI
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query301 2.2.26 [Sep-21-2011]
Q10107359 Probable ribosomal RNA sm yes no 0.594 0.498 0.5 4e-43
Q9XX15231 Ribosomal RNA small subun yes no 0.521 0.679 0.528 4e-42
O35130244 Ribosomal RNA small subun yes no 0.544 0.672 0.497 5e-41
Q06287252 Ribosomal RNA small subun yes no 0.568 0.678 0.459 7e-40
Q92979244 Ribosomal RNA small subun yes no 0.544 0.672 0.485 7e-40
Q9P8P7267 Ribosomal RNA small subun N/A no 0.568 0.640 0.454 1e-39
Q9W4J5252 Ribosomal RNA small subun yes no 0.561 0.670 0.444 2e-37
Q96UP2229 Ribosomal RNA small subun yes no 0.511 0.672 0.484 5e-33
Q5JI44220 Ribosomal RNA small subun yes no 0.488 0.668 0.324 2e-11
O50087229 Ribosomal RNA small subun yes no 0.338 0.445 0.415 4e-10
>sp|Q10107|MRA1_SCHPO Probable ribosomal RNA small subunit methyltransferase mra1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=mra1 PE=1 SV=2 Back     alignment and function desciption
 Score =  175 bits (443), Expect = 4e-43,   Method: Compositional matrix adjust.
 Identities = 95/190 (50%), Positives = 124/190 (65%), Gaps = 11/190 (5%)

Query: 68  VVHEMEGIP---IAPSDQNTKRPGVIFVLEKASLEVAKVGKS----YQILNSDDHSNFLR 120
           V   M  IP   I   D  T+R  +I VL++A LE+ KVGK+    YQ+LN DDH   L+
Sbjct: 128 VTTHMAPIPARSIGSHDTTTQR--LIVVLDQACLEIYKVGKAKDAKYQLLNCDDHQGILK 185

Query: 121 RNNKNPADYRPDIVHQALLSILDSRLTKAGRLQAVYVRTDKGVLFEVKPHVRLPRTYKRF 180
           + N+N A  RPDI HQ LL++LDS L KAGRLQ VY+ T K VL EV P VR+PRT+KRF
Sbjct: 186 KLNRNIAQARPDITHQCLLTLLDSPLNKAGRLQ-VYIHTAKKVLIEVNPSVRIPRTFKRF 244

Query: 181 AGIMLQLLQKLSITAVGKREKLLRVIKNPVTQYLPVNSRKIGFSYSSEKLVKMRNYVASI 240
           +G+M+QLL KLSI +V   EKLL+VIKNPVT YLP N RK   S+ +   V  R Y+ ++
Sbjct: 245 SGLMVQLLHKLSIRSVNGNEKLLKVIKNPVTDYLPPNCRKATLSFDAPT-VPPRKYLETL 303

Query: 241 SDDDNLVFVV 250
             + ++   +
Sbjct: 304 QPNQSVCIAI 313
Involved in 40S ribosomal subunit biogenesis and 18S rRNA processing. Specifically catalyzes the N1-methylation of the pseudouridine corresponding to position 1189 in S.cerevisiae 18S rRNA. Thus, appears to be the methyltransferase involved in the biosynthesis of the hypermodified N1-methyl-N3-(3-amino-3-carboxypropyl) pseudouridine (m1acp3-Psi) conserved in eukaryotic 18S rRNA (By similarity). Essential for cell growth. It also has a key role in promoting the mating function.
Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)
EC: 2EC: .EC: 1EC: .EC: 1EC: .EC: -
>sp|Q9XX15|NEP1_CAEEL Ribosomal RNA small subunit methyltransferase nep-1 OS=Caenorhabditis elegans GN=Y39A1A.14 PE=3 SV=1 Back     alignment and function description
>sp|O35130|NEP1_MOUSE Ribosomal RNA small subunit methyltransferase NEP1 OS=Mus musculus GN=Emg1 PE=1 SV=1 Back     alignment and function description
>sp|Q06287|NEP1_YEAST Ribosomal RNA small subunit methyltransferase NEP1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=EMG1 PE=1 SV=1 Back     alignment and function description
>sp|Q92979|NEP1_HUMAN Ribosomal RNA small subunit methyltransferase NEP1 OS=Homo sapiens GN=EMG1 PE=1 SV=4 Back     alignment and function description
>sp|Q9P8P7|NEP1_CANAX Ribosomal RNA small subunit methyltransferase NEP1 OS=Candida albicans GN=NEP1 PE=3 SV=1 Back     alignment and function description
>sp|Q9W4J5|NEP1_DROME Ribosomal RNA small subunit methyltransferase NEP1 OS=Drosophila melanogaster GN=CG3527 PE=3 SV=2 Back     alignment and function description
>sp|Q96UP2|NEP1_CANGA Ribosomal RNA small subunit methyltransferase NEP1 OS=Candida glabrata (strain ATCC 2001 / CBS 138 / JCM 3761 / NBRC 0622 / NRRL Y-65) GN=NEP1 PE=3 SV=1 Back     alignment and function description
>sp|Q5JI44|NEP1_PYRKO Ribosomal RNA small subunit methyltransferase Nep1 OS=Pyrococcus kodakaraensis (strain ATCC BAA-918 / JCM 12380 / KOD1) GN=nep1 PE=3 SV=1 Back     alignment and function description
>sp|O50087|NEP1_PYRHO Ribosomal RNA small subunit methyltransferase Nep1 OS=Pyrococcus horikoshii (strain ATCC 700860 / DSM 12428 / JCM 9974 / NBRC 100139 / OT-3) GN=nep1 PE=3 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query301
255581478294 Nucleolar essential protein, putative [R 0.807 0.826 0.712 2e-92
297739930319 unnamed protein product [Vitis vinifera] 0.754 0.711 0.672 1e-86
225441240271 PREDICTED: ribosomal RNA small subunit m 0.754 0.837 0.672 2e-86
225465341271 PREDICTED: ribosomal RNA small subunit m 0.754 0.837 0.684 4e-85
388522811272 unknown [Lotus japonicus] 0.764 0.845 0.638 1e-83
224086843284 predicted protein [Populus trichocarpa] 0.591 0.626 0.848 6e-83
358248388276 uncharacterized protein LOC100788480 [Gl 0.774 0.844 0.608 8e-81
255627521253 unknown [Glycine max] 0.774 0.920 0.604 2e-80
15230180298 nucleolar essential protein-related prot 0.827 0.835 0.615 1e-79
358248662282 uncharacterized protein LOC100778294 [Gl 0.797 0.851 0.611 3e-78
>gi|255581478|ref|XP_002531546.1| Nucleolar essential protein, putative [Ricinus communis] gi|223528837|gb|EEF30840.1| Nucleolar essential protein, putative [Ricinus communis] Back     alignment and taxonomy information
 Score =  345 bits (885), Expect = 2e-92,   Method: Compositional matrix adjust.
 Identities = 183/257 (71%), Positives = 211/257 (82%), Gaps = 14/257 (5%)

Query: 1   MVRAFKMKGQKRKKKRDEKYDREEEEEEKEEVEEEELNDSGKRAKLEKTS---QNDNKKG 57
           MVR + +KG KRKK R+EKYD+  +E +      E+  +S KRA L KT    +N +KK 
Sbjct: 1   MVRPYGIKGPKRKK-REEKYDKVGDEVD------EQTEESAKRAMLSKTEMPLENCSKKT 53

Query: 58  EEDGQEEKDVVVHE----MEGIPIAPSDQNTKRPGVIFVLEKASLEVAKVGKSYQILNSD 113
           E++ + ++   +      MEGIPI PSD  TK+PGVIFVLEKASLEVAKVGK+YQILNSD
Sbjct: 54  EQEEEGDEGEELEGEVQEMEGIPIMPSDSKTKKPGVIFVLEKASLEVAKVGKTYQILNSD 113

Query: 114 DHSNFLRRNNKNPADYRPDIVHQALLSILDSRLTKAGRLQAVYVRTDKGVLFEVKPHVRL 173
           DH+NFLR+NNKNPADYRPDIV+QALLSILDS L KAGRLQAVYV+T+KGVLFEVKP+VR+
Sbjct: 114 DHANFLRKNNKNPADYRPDIVYQALLSILDSPLNKAGRLQAVYVKTEKGVLFEVKPYVRI 173

Query: 174 PRTYKRFAGIMLQLLQKLSITAVGKREKLLRVIKNPVTQYLPVNSRKIGFSYSSEKLVKM 233
           PRTYKRF GIMLQLLQKLSITA GKREKLLRVIKNPVTQYLPVNSRKIGFSYSS+KLVKM
Sbjct: 174 PRTYKRFTGIMLQLLQKLSITAAGKREKLLRVIKNPVTQYLPVNSRKIGFSYSSDKLVKM 233

Query: 234 RNYVASISDDDNLVFVV 250
            NYVA++ DD  LVFVV
Sbjct: 234 SNYVAAVDDDVGLVFVV 250

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|297739930|emb|CBI30112.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|225441240|ref|XP_002273311.1| PREDICTED: ribosomal RNA small subunit methyltransferase nep-1 [Vitis vinifera] Back     alignment and taxonomy information
>gi|225465341|ref|XP_002275293.1| PREDICTED: ribosomal RNA small subunit methyltransferase nep-1 [Vitis vinifera] gi|296085405|emb|CBI29137.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|388522811|gb|AFK49467.1| unknown [Lotus japonicus] Back     alignment and taxonomy information
>gi|224086843|ref|XP_002307982.1| predicted protein [Populus trichocarpa] gi|222853958|gb|EEE91505.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|358248388|ref|NP_001239618.1| uncharacterized protein LOC100788480 [Glycine max] gi|255636540|gb|ACU18608.1| unknown [Glycine max] Back     alignment and taxonomy information
>gi|255627521|gb|ACU14105.1| unknown [Glycine max] Back     alignment and taxonomy information
>gi|15230180|ref|NP_191259.1| nucleolar essential protein-related protein [Arabidopsis thaliana] gi|6911870|emb|CAB72170.1| putative protein [Arabidopsis thaliana] gi|28466945|gb|AAO44081.1| At3g57000 [Arabidopsis thaliana] gi|110735698|dbj|BAE99829.1| hypothetical protein [Arabidopsis thaliana] gi|332646076|gb|AEE79597.1| nucleolar essential protein-related protein [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|358248662|ref|NP_001239919.1| uncharacterized protein LOC100778294 [Glycine max] gi|255636941|gb|ACU18803.1| unknown [Glycine max] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query301
TAIR|locus:2080645298 AT3G57000 [Arabidopsis thalian 0.704 0.711 0.637 5.6e-68
ASPGD|ASPL0000035794260 AN2759 [Emericella nidulans (t 0.568 0.657 0.473 8.7e-40
POMBASE|SPAC18G6.07c359 mra1 "rRNA (pseudouridine) met 0.564 0.473 0.511 1.8e-39
WB|WBGene00012652231 Y39A1A.14 [Caenorhabditis eleg 0.561 0.731 0.494 3.7e-39
UNIPROTKB|Q9XX15231 Y39A1A.14 "Ribosomal RNA small 0.561 0.731 0.494 3.7e-39
SGD|S000004176252 EMG1 "Methyltransferase for rR 0.564 0.674 0.467 1.6e-38
RGD|1307665244 Emg1 "EMG1 nucleolar protein h 0.524 0.647 0.518 3.4e-38
MGI|MGI:1315195244 Emg1 "EMG1 nucleolar protein h 0.524 0.647 0.518 4.3e-38
UNIPROTKB|E2RKH8244 EMG1 "Uncharacterized protein" 0.524 0.647 0.512 2.4e-37
UNIPROTKB|I3LPQ4244 EMG1 "Uncharacterized protein" 0.524 0.647 0.512 2.4e-37
TAIR|locus:2080645 AT3G57000 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 690 (248.0 bits), Expect = 5.6e-68, P = 5.6e-68
 Identities = 137/215 (63%), Positives = 171/215 (79%)

Query:    39 DSGKRAKLEKTSQNDNXXXXXXXXXXXXXXXHEMEG-IPIAPSDQNTKRPGVIFVLEKAS 97
             +S K+AK E TS+ +                 ++ G IPI  +  N ++ G++FVLEKAS
Sbjct:    40 ESSKKAKKESTSRAEEDNDEEEVTVEATAAAEDIVGGIPIVLNAPNKEKSGIVFVLEKAS 99

Query:    98 LEVAKVGKSYQILNSDDHSNFLRRNNKNPADYRPDIVHQALLSILDSRLTKAGRLQAVYV 157
             LEVAKVGK+YQ+LNSDDH+NFL++NN+NPADYRPDI HQALL ILDS + KAGRL+AVYV
Sbjct:   100 LEVAKVGKTYQLLNSDDHANFLKKNNRNPADYRPDITHQALLMILDSPVNKAGRLKAVYV 159

Query:   158 RTDKGVLFEVKPHVRLPRTYKRFAGIMLQLLQKLSITAVGKREKLLRVIKNPVTQY-LPV 216
             RT+KGVLFEVKPHVR+PRT+KRFAGIMLQLLQKLSITAV  REKLLR +KNP+ ++ LPV
Sbjct:   160 RTEKGVLFEVKPHVRIPRTFKRFAGIMLQLLQKLSITAVNSREKLLRCVKNPIEEHHLPV 219

Query:   217 NSRKIGFSYSSEKLVKMRNYVASISDDD-NLVFVV 250
             NS +IGFS+SSEKLV M+ ++A++ DDD + VFVV
Sbjct:   220 NSHRIGFSHSSEKLVNMQKHLATVCDDDRDTVFVV 254
GO:0005634 "nucleus" evidence=ISM
GO:0008168 "methyltransferase activity" evidence=IEA
GO:0006626 "protein targeting to mitochondrion" evidence=RCA
GO:0009640 "photomorphogenesis" evidence=RCA
GO:0009909 "regulation of flower development" evidence=RCA
GO:0010388 "cullin deneddylation" evidence=RCA
GO:0034968 "histone lysine methylation" evidence=RCA
ASPGD|ASPL0000035794 AN2759 [Emericella nidulans (taxid:162425)] Back     alignment and assigned GO terms
POMBASE|SPAC18G6.07c mra1 "rRNA (pseudouridine) methyltransferase Mra1" [Schizosaccharomyces pombe (taxid:4896)] Back     alignment and assigned GO terms
WB|WBGene00012652 Y39A1A.14 [Caenorhabditis elegans (taxid:6239)] Back     alignment and assigned GO terms
UNIPROTKB|Q9XX15 Y39A1A.14 "Ribosomal RNA small subunit methyltransferase nep-1" [Caenorhabditis elegans (taxid:6239)] Back     alignment and assigned GO terms
SGD|S000004176 EMG1 "Methyltransferase for rRNA" [Saccharomyces cerevisiae (taxid:4932)] Back     alignment and assigned GO terms
RGD|1307665 Emg1 "EMG1 nucleolar protein homolog (S. cerevisiae)" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
MGI|MGI:1315195 Emg1 "EMG1 nucleolar protein homolog (S. cerevisiae)" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
UNIPROTKB|E2RKH8 EMG1 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
UNIPROTKB|I3LPQ4 EMG1 "Uncharacterized protein" [Sus scrofa (taxid:9823)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query301
pfam03587200 pfam03587, EMG1, EMG1/NEP1 methyltransferase 7e-61
COG1756223 COG1756, Mra1, Uncharacterized conserved protein [ 2e-31
PRK04171222 PRK04171, PRK04171, ribosome biogenesis protein; P 6e-18
pfam05432291 pfam05432, BSP_II, Bone sialoprotein II (BSP-II) 1e-04
pfam03064238 pfam03064, U79_P34, HSV U79 / HCMV P34 0.002
>gnl|CDD|217628 pfam03587, EMG1, EMG1/NEP1 methyltransferase Back     alignment and domain information 
 Score =  192 bits (489), Expect = 7e-61
 Identities = 71/161 (44%), Positives = 97/161 (60%), Gaps = 5/161 (3%)

Query: 91  FVLEKASLEVAKVGK--SYQILNSDDHSNFLRRNNKNPADYRPDIVHQALLSILDSRLTK 148
            VLE+A+LE+    K   Y++L+SDDH   +++  K     RPDIVHQ LL +LDS L K
Sbjct: 1   IVLEEAALELVPREKKPGYELLDSDDHYAAMKKLKKKEKRGRPDIVHQCLLMLLDSPLNK 60

Query: 149 AGRLQAVYVRTDKGVLFEVKPHVRLPRTYKRFAGIMLQLLQKLSITAVGKREKLLRVIKN 208
           AG L+ VY+ T  GVL EV P  R+PR Y RF G+M QLL+K  + A G  E LL+V+KN
Sbjct: 61  AGLLR-VYIHTRDGVLIEVSPETRVPRNYNRFVGLMEQLLKKGRVPAEGG-EPLLKVVKN 118

Query: 209 PVTQYLPVNSRKIGFSYSSEKLVKMRNYVASISDDDNLVFV 249
           P+T  LP  ++KI  S   EK V  +  V+ + +      +
Sbjct: 119 PLTDLLPEGAKKILLSEKGEK-VSPKELVSELLNKPVAFVI 158

Members of this family are essential for 40S ribosomal biogenesis. The structure of EMG1 has revealed that it is a novel member of the superfamily of alpha/beta knot fold methyltransferases. Length = 200
>gnl|CDD|224670 COG1756, Mra1, Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>gnl|CDD|235238 PRK04171, PRK04171, ribosome biogenesis protein; Provisional Back     alignment and domain information
>gnl|CDD|114172 pfam05432, BSP_II, Bone sialoprotein II (BSP-II) Back     alignment and domain information
>gnl|CDD|217348 pfam03064, U79_P34, HSV U79 / HCMV P34 Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 301
KOG3073236 consensus Protein required for 18S rRNA maturation 100.0
PF03587202 EMG1: EMG1/NEP1 methyltransferase; InterPro: IPR00 100.0
PRK04171222 ribosome biogenesis protein; Provisional 100.0
COG1756223 Mra1 Uncharacterized conserved protein [Function u 100.0
PF02590155 SPOUT_MTase: Predicted SPOUT methyltransferase; In 86.23
PRK00103157 rRNA large subunit methyltransferase; Provisional 84.8
COG1576155 Uncharacterized conserved protein [Function unknow 80.86
>KOG3073 consensus Protein required for 18S rRNA maturation and 40S ribosome biogenesis [Translation, ribosomal structure and biogenesis] Back     alignment and domain information 
Probab=100.00  E-value=5.8e-76  Score=529.34  Aligned_cols=225  Identities=52%  Similarity=0.817  Sum_probs=206.5

Q ss_pred             hhcccccccccCCcCccCCCcccccchhhhhhhhhcCCCCCCCCcCCCCCcEEEEecCCccceeecCCeeeecCchhhHH
Q 022175           38 NDSGKRAKLEKTSQNDNKKGEEDGQEEKDVVVHEMEGIPIAPSDQNTKRPGVIFVLEKASLEVAKVGKSYQILNSDDHSN  117 (301)
Q Consensus        38 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~livVLe~A~LE~~K~gk~~~LLn~d~H~~  117 (301)
                      .++...++.++++...+++|+|                 ..|    ..++++||||++|+||++|+| +|+|||||+|.+
T Consensus         3 ~e~~~~~~~~~~~~~k~d~~~~-----------------~l~----~~~~~~ivVL~~a~le~~Kvg-~y~ll~~d~h~~   60 (236)
T KOG3073|consen    3 VESSRKAKKEKADRAKEDNDEE-----------------ALP----KTKKRLIVVLEGASLETAKVG-KYQLLNSDDHAN   60 (236)
T ss_pred             chhhhhcccccccccccCcccc-----------------ccc----ccCCcEEEEecCCCchhhhhh-heeeeccchhhH
Confidence            3445556677777777777764                 112    467899999999999999999 899999999999


Q ss_pred             HHHhCCCCCCCCCCcHHHHHHHHhhcchhhhcCCccEEEEEecCCeEEEEcCCCCCCCChhhHHHHHHHHHHhCcccccc
Q 022175          118 FLRRNNKNPADYRPDIVHQALLSILDSRLTKAGRLQAVYVRTDKGVLFEVKPHVRLPRTYKRFAGIMLQLLQKLSITAVG  197 (301)
Q Consensus       118 ~mrkl~~~~~~gRPDIvHq~LL~lLDSPLNKaG~Lq~VYIhT~~gvlIeV~P~~RIPRtykRF~GLM~QLL~k~~I~a~~  197 (301)
                      +++|+++++.++||||+|||||+||||||||||+|| |||||.+|+||||||++||||||+||+|||+|||||++|++.+
T Consensus        61 ~lkk~~rdp~d~rpDitHQ~Ll~LlDSPlNkAgkLq-Vyi~T~knvLiEvnp~~rIPrtfkrfsglMvqLLhKlsIra~d  139 (236)
T KOG3073|consen   61 FLKKNNRDPADYRPDITHQCLLMLLDSPLNKAGKLQ-VYIHTAKNVLIEVNPQVRIPRTFKRFSGLMVQLLHKLSIRAVD  139 (236)
T ss_pred             HHHhccCCHHhcCCcHHHHHHHHHhcCcccccceeE-EEEEccCceEEEecccccCCCCHHHHHHHHHHHHHHheEeccC
Confidence            999999999999999999999999999999999999 9999999999999999999999999999999999999999999


Q ss_pred             cccceEEEEecccccccCCCCeEEEEeccCccccchhhHHhhhCCCCCeEEEECccccCCCcCCCcceeeee-ecccchh
Q 022175          198 KREKLLRVIKNPVTQYLPVNSRKIGFSYSSEKLVKMRNYVASISDDDNLVFVVCSEVISAYIYGDLFFHIYI-LSDINLY  276 (301)
Q Consensus       198 ~~e~LLkviknpLtd~Lp~g~~kI~LS~~~g~~v~l~e~v~~l~~~~~ivfvVGafahGdf~~~d~~~~~~i-~S~~~l~  276 (301)
                      +.++||+|||||+++|||+||++|+|||++....+.++|+..+.++.++||||||||||+  +.++|+++.+ ||||+||
T Consensus       140 ~~~kLlkVvKNPVtdHlPv~~~Ki~lSf~~p~l~~~~~lv~~~~~~~~~v~~Iga~ahg~--~~~ey~de~vsiSnYpLS  217 (236)
T KOG3073|consen  140 GTEKLLKVVKNPVTDHLPVNSRKIGLSFSGPKLSNVRDLVASLDDDDSVVFVIGAMAHGK--ISVEYVDEKVSISNYPLS  217 (236)
T ss_pred             chHHHHHHhcCcccccCCCCccEEeecCCCcccccHHhhccccCCCCCEEEEEecccccc--cchhhhhhhcccccCcCc
Confidence            999999999999999999999999999986666669999999988889999999999996  5688999988 9999999


Q ss_pred             h--hhhhhhhhhh
Q 022175          277 F--SCLSFHVRLV  287 (301)
Q Consensus       277 ~--a~~~~~~~~~  287 (301)
                      |  +|||||.++.
T Consensus       218 aa~~CsKi~~~~E  230 (236)
T KOG3073|consen  218 AALCCSKITSAFE  230 (236)
T ss_pred             HHHHHHHHHHHHH
Confidence            8  9999998874

>PF03587 EMG1: EMG1/NEP1 methyltransferase; InterPro: IPR005304 Members of this family are essential for 40S ribosomal biogenesis Back     alignment and domain information
>PRK04171 ribosome biogenesis protein; Provisional Back     alignment and domain information
>COG1756 Mra1 Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>PF02590 SPOUT_MTase: Predicted SPOUT methyltransferase; InterPro: IPR003742 This family of proteins are predicted to be SPOUT methyltransferases [] Back     alignment and domain information
>PRK00103 rRNA large subunit methyltransferase; Provisional Back     alignment and domain information
>COG1576 Uncharacterized conserved protein [Function unknown] Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query301
3oii_A253 Crystal Structure Of Saccharomyces Cerevisiae Nep1E 7e-41
2v3k_A258 The Yeast Ribosome Synthesis Factor Emg1 Alpha Beta 5e-40
3bbe_A205 M. Jannaschii Nep1 Length = 205 7e-11
3bbd_A205 M. Jannaschii Nep1 Complexed With S-Adenosyl-Homocy 2e-09
3o7b_A244 Crystal Structure Of Archaeoglobus Fulgidus Nep1 Bo 6e-07
>pdb|3OII|A Chain A, Crystal Structure Of Saccharomyces Cerevisiae Nep1EMG1 BOUND TO S- Adenosylhomocysteine Length = 253 Back     alignment and structure 
Iteration: 1

 Score =  164 bits (414), Expect = 7e-41,   Method: Compositional matrix adjust.
 Identities = 86/187 (45%), Positives = 128/187 (68%), Gaps = 16/187 (8%)
Query: 75  IPIAPS-----DQNTKRPGVIFVLEKASLEVAKV------GKSYQILNSDDHSNFLRRNN 123
           +P AP      D+ TKR  +I VL  ASLE  K+      G  Y +LN DDH   L++  
Sbjct: 25  VPQAPPVLTSKDKITKR--MIVVLAMASLETHKISSNGPGGDKYVLLNCDDHQGLLKKMG 82
Query: 124 KNPADYRPDIVHQALLSILDSRLTKAGRLQAVYVRTDKGVLFEVKPHVRLPRTYKRFAGI 183
           ++ ++ RPDI HQ LL++LDS + KAG+LQ VY++T +G+L EV P VR+PRT+KRF+G+
Sbjct: 83  RDISEARPDITHQCLLTLLDSPINKAGKLQ-VYIQTSRGILIEVNPTVRIPRTFKRFSGL 141
Query: 184 MLQLLQKLSITAVGKREKLLRVIKNPVTQYLPVNSRKIGFSYSSEKLVKMRNYVASISDD 243
           M+QLL KLSI +V   EKLL+VIKNP+T +LP   RK+  S+ +  ++++++Y+  + DD
Sbjct: 142 MVQLLHKLSIRSVNSEEKLLKVIKNPITDHLPTKCRKVTLSFDAP-VIRVQDYIEKLDDD 200
Query: 244 DNL-VFV 249
           +++ VFV
Sbjct: 201 ESICVFV 207
>pdb|2V3K|A Chain A, The Yeast Ribosome Synthesis Factor Emg1 Alpha Beta Knot Fold Methyltransferase Length = 258 Back     alignment and structure
>pdb|3BBE|A Chain A, M. Jannaschii Nep1 Length = 205 Back     alignment and structure
>pdb|3BBD|A Chain A, M. Jannaschii Nep1 Complexed With S-Adenosyl-Homocysteine Length = 205 Back     alignment and structure
>pdb|3O7B|A Chain A, Crystal Structure Of Archaeoglobus Fulgidus Nep1 Bound To S- Adenosylhomocysteine Length = 244 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query301
3oii_A253 Essential for mitotic growth 1; EMG1, scnep1, spou 1e-61
3bbd_A205 Ribosome biogenesis protein NEP1-like; methyltrans 3e-47
3o7b_A244 Ribosome biogenesis NEP1 RNA methyltransferase; sp 2e-43
3lvg_D190 LCB, clathrin light chain B; SELF assembly, coated 2e-06
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 4e-06
>3oii_A Essential for mitotic growth 1; EMG1, scnep1, spout, ribosome biogenesis, methyltransferase, processing, ribosomal protein; HET: SAH; 1.85A {Saccharomyces cerevisiae} PDB: 3oij_A* 3oin_A* 2v3j_A 2v3k_A* Length = 253 Back     alignment and structure
 Score =  195 bits (497), Expect = 1e-61
 Identities = 79/185 (42%), Positives = 121/185 (65%), Gaps = 9/185 (4%)

Query: 73  EGIPIAPSDQNTKRPGVIFVLEKASLEVAKV------GKSYQILNSDDHSNFLRRNNKNP 126
           +  P+  S     +  +I VL  ASLE  K+      G  Y +LN DDH   L++  ++ 
Sbjct: 27  QAPPVLTSKDKITK-RMIVVLAMASLETHKISSNGPGGDKYVLLNCDDHQGLLKKMGRDI 85

Query: 127 ADYRPDIVHQALLSILDSRLTKAGRLQAVYVRTDKGVLFEVKPHVRLPRTYKRFAGIMLQ 186
           ++ RPDI HQ LL++LDS + KAG+LQ VY++T +G+L EV P VR+PRT+KRF+G+M+Q
Sbjct: 86  SEARPDITHQCLLTLLDSPINKAGKLQ-VYIQTSRGILIEVNPTVRIPRTFKRFSGLMVQ 144

Query: 187 LLQKLSITAVGKREKLLRVIKNPVTQYLPVNSRKIGFSYSSEKLVKMRNYVASISDDDNL 246
           LL KLSI +V   EKLL+VIKNP+T +LP   RK+  S+ +   +++++Y+  + DD+++
Sbjct: 145 LLHKLSIRSVNSEEKLLKVIKNPITDHLPTKCRKVTLSFDAPV-IRVQDYIEKLDDDESI 203

Query: 247 VFVVC 251
              V 
Sbjct: 204 CVFVG 208
>3bbd_A Ribosome biogenesis protein NEP1-like; methyltransferase, S-adenosyl-methionin adenosyl-homocysteine, rRNA processing; HET: MSE SAH; 2.15A {Methanocaldococcus jannaschii} SCOP: c.116.1.6 PDB: 3bbe_A 3bbh_A* Length = 205 Back     alignment and structure
>3o7b_A Ribosome biogenesis NEP1 RNA methyltransferase; spout, rRNA processi transferase; HET: TYR SAH; 1.45A {Archaeoglobus fulgidus} Length = 244 Back     alignment and structure
>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} Length = 190 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query301
3oii_A253 Essential for mitotic growth 1; EMG1, scnep1, spou 100.0
3bbd_A205 Ribosome biogenesis protein NEP1-like; methyltrans 100.0
3o7b_A244 Ribosome biogenesis NEP1 RNA methyltransferase; sp 100.0
2qmm_A197 UPF0217 protein AF_1056; alpha/beta knot, SAM, str 99.86
3aia_A211 UPF0217 protein MJ1640; DUF358, rRNA methyltransfe 99.82
4fak_A163 Ribosomal RNA large subunit methyltransferase H; a 91.72
1o6d_A163 Hypothetical UPF0247 protein TM0844; structural ge 88.9
1to0_A167 Hypothetical UPF0247 protein YYDA; structural geno 85.58
1ns5_A155 Hypothetical protein YBEA; structural genomics, PS 83.02
>3oii_A Essential for mitotic growth 1; EMG1, scnep1, spout, ribosome biogenesis, methyltransferase, processing, ribosomal protein; HET: SAH; 1.85A {Saccharomyces cerevisiae} PDB: 3oij_A* 3oin_A* 2v3j_A 2v3k_A* Back     alignment and structure
Probab=100.00  E-value=5.3e-77  Score=548.16  Aligned_cols=203  Identities=41%  Similarity=0.724  Sum_probs=191.5

Q ss_pred             CCCCcEEEEecCCccceeec------CCeeeecCchhhHHHHHhCCCCCCCCCCcHHHHHHHHhhcchhhhcCCccEEEE
Q 022175           84 TKRPGVIFVLEKASLEVAKV------GKSYQILNSDDHSNFLRRNNKNPADYRPDIVHQALLSILDSRLTKAGRLQAVYV  157 (301)
Q Consensus        84 ~~~~~livVLe~A~LE~~K~------gk~~~LLn~d~H~~~mrkl~~~~~~gRPDIvHq~LL~lLDSPLNKaG~Lq~VYI  157 (301)
                      +.++||||||++|+||+++.      +++|+|||+|+|+++|+++++++++|||||||||||+||||||||+|+|| |||
T Consensus        37 ~~~~rlivVL~~a~LE~v~~~~~~r~~~~~~LLd~~~H~~~m~k~~~~~~~~RPDIvHq~LL~lldSpLNk~G~L~-VYI  115 (253)
T 3oii_A           37 KITKRMIVVLAMASLETHKISSNGPGGDKYVLLNCDDHQGLLKKMGRDISEARPDITHQCLLTLLDSPINKAGKLQ-VYI  115 (253)
T ss_dssp             CSSCCEEEEEEEECCCEECC---------CEECCTTTCHHHHHHTTCCGGGCCHHHHHHHHHHHHTSHHHHTTCEE-EEE
T ss_pred             cCCceEEEEeCCCccceeeccccccCCCCeEeechHHHHHHHHHcCCchhhcCCCHHHHHHHHHhcChhhhcCceE-EEE
Confidence            57899999999999999995      57899999999999999999999999999999999999999999999999 999


Q ss_pred             EecCCeEEEEcCCCCCCCChhhHHHHHHHHHHhCcccccccccceEEEEecccccccCCCCeEEEEeccCccccchhhHH
Q 022175          158 RTDKGVLFEVKPHVRLPRTYKRFAGIMLQLLQKLSITAVGKREKLLRVIKNPVTQYLPVNSRKIGFSYSSEKLVKMRNYV  237 (301)
Q Consensus       158 hT~~gvlIeV~P~~RIPRtykRF~GLM~QLL~k~~I~a~~~~e~LLkviknpLtd~Lp~g~~kI~LS~~~g~~v~l~e~v  237 (301)
                      ||.+|+||+|||++||||||+||+|||+|||++++|++.+++++||++++|||++|||+|+++|+||++ |+.+++.+|+
T Consensus       116 hT~~~~lIeV~P~~RiPRty~rF~GLM~qLL~k~~I~~~~~~~~LLkvikn~l~d~Lp~~~~kI~ls~~-g~~v~~~~~~  194 (253)
T 3oii_A          116 QTSRGILIEVNPTVRIPRTFKRFSGLMVQLLHKLSIRSVNSEEKLLKVIKNPITDHLPTKCRKVTLSFD-APVIRVQDYI  194 (253)
T ss_dssp             EETTSCEEEECTTCCCCSSHHHHHHHHHHHHHHSEEEETTEEEEEEEEECSCGGGTSCSSEEEEEECTT-SCBCCHHHHH
T ss_pred             EecCCEEEEECCCCCCCCCHHHHHHHHHHHHhcCcccCCCCCCeeEEEEcCCHHHhCCCCCeEEEEccC-CCccCHHHHH
Confidence            999999999999999999999999999999999999998788999999999999999999999999965 7799999999


Q ss_pred             hhhCCCCCeEEEECccccCCCcCCCcceeeee-ecccchhh--hhhhhhhhhhh
Q 022175          238 ASISDDDNLVFVVCSEVISAYIYGDLFFHIYI-LSDINLYF--SCLSFHVRLVQ  288 (301)
Q Consensus       238 ~~l~~~~~ivfvVGafahGdf~~~d~~~~~~i-~S~~~l~~--a~~~~~~~~~~  288 (301)
                      +.+.++.++||||||||||+++|+++++++++ ||+|+|||  +|+++|.++..
T Consensus       195 ~~l~~~~~i~vvVGafahG~~~f~~~~~~e~iSIs~ypLsa~~~c~kic~a~E~  248 (253)
T 3oii_A          195 EKLDDDESICVFVGAMARGKDNFADEYVDEKVGLSNYPLSASVACSKFCHGAED  248 (253)
T ss_dssp             HTSCTTCEEEEEEECSSSCCSCTTTTTCSEEEBSCSSCCCHHHHHHHHHHHHHH
T ss_pred             HhcccCCCeEEEEeeeCCCCCcccchhcceeEEEeCCChhHHHHHHHHHHHHHH
Confidence            99988889999999999999889888999888 99999998  99999988753
>3bbd_A Ribosome biogenesis protein NEP1-like; methyltransferase, S-adenosyl-methionin adenosyl-homocysteine, rRNA processing; HET: MSE SAH; 2.15A {Methanocaldococcus jannaschii} SCOP: c.116.1.6 PDB: 3bbe_A 3bbh_A* Back     alignment and structure
>3o7b_A Ribosome biogenesis NEP1 RNA methyltransferase; spout, rRNA processi transferase; HET: TYR SAH; 1.45A {Archaeoglobus fulgidus} Back     alignment and structure
>2qmm_A UPF0217 protein AF_1056; alpha/beta knot, SAM, structural genomics, PSI-2, protein structure initiative; HET: SAM; 1.85A {Archaeoglobus fulgidus dsm 4304} SCOP: c.116.1.7 Back     alignment and structure
>4fak_A Ribosomal RNA large subunit methyltransferase H; alpha/beta methyltransferase rossmann fold, rRNA methylation rRNA, ribosomal protein; HET: SAM PG4; 1.70A {Staphylococcus aureus} PDB: 1vh0_A Back     alignment and structure
>1o6d_A Hypothetical UPF0247 protein TM0844; structural genomics, unknown function; 1.66A {Thermotoga maritima} SCOP: c.116.1.3 Back     alignment and structure
>1to0_A Hypothetical UPF0247 protein YYDA; structural genomics, unknown function, PSI, protein structure initiative; 2.50A {Bacillus subtilis} SCOP: c.116.1.3 Back     alignment and structure
>1ns5_A Hypothetical protein YBEA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 1.68A {Escherichia coli} SCOP: c.116.1.3 Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 301
d2v3ka1227 c.116.1.6 (A:25-251) Essential for mitotic growth 6e-61
d3bbda1204 c.116.1.6 (A:2-205) Ribosome biogenesis protein NE 7e-48
>d2v3ka1 c.116.1.6 (A:25-251) Essential for mitotic growth 1, EMG1 {Saccharomyces cerevisiae [TaxId: 4932]} Length = 227 Back     information, alignment and structure

class: Alpha and beta proteins (a/b)
fold: alpha/beta knot
superfamily: alpha/beta knot
family: EMG1/NEP1-like
domain: Essential for mitotic growth 1, EMG1
species: Saccharomyces cerevisiae [TaxId: 4932]

 Score =  191 bits (486), Expect = 6e-61
 Identities = 85/208 (40%), Positives = 128/208 (61%), Gaps = 16/208 (7%)

Query: 76  PIAPSDQNTKRPGVIFVLEKASLEVAKV------GKSYQILNSDDHSNFLRRNNKNPADY 129
            +   D+ TKR  +I VL  ASLE  K+      G  Y +LN DDH   L++  ++ ++ 
Sbjct: 6   VLTSKDKITKR--MIVVLAMASLETHKISSNGPGGDKYVLLNCDDHQGLLKKMGRDISEA 63

Query: 130 RPDIVHQALLSILDSRLTKAGRLQAVYVRTDKGVLFEVKPHVRLPRTYKRFAGIMLQLLQ 189
           RPDI HQ LL++LDS + KAG+LQ VY++T +G+L EV P VR+PRT+KRF+G+M+QLL 
Sbjct: 64  RPDITHQCLLTLLDSPINKAGKLQ-VYIQTSRGILIEVNPTVRIPRTFKRFSGLMVQLLH 122

Query: 190 KLSITAVGKREKLLRVIKNPVTQYLPVNSRKIGFSYSSEKLVKMRNYVASISDDDNLVFV 249
           KLSI +V   EKLL+VIKNP+T +LP   RK+  S+ +  + ++++Y+  + DD+++   
Sbjct: 123 KLSIRSVNSEEKLLKVIKNPITDHLPTKCRKVTLSFDAPVI-RVQDYIEKLDDDESICVF 181

Query: 250 V------CSEVISAYIYGDLFFHIYILS 271
           V             Y+   +    Y LS
Sbjct: 182 VGAMARGKDNFADEYVDEKVGLSNYPLS 209
>d3bbda1 c.116.1.6 (A:2-205) Ribosome biogenesis protein NEP1 {Methanococcus jannaschii [TaxId: 2190]} Length = 204 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query301
d2v3ka1227 Essential for mitotic growth 1, EMG1 {Saccharomyce 100.0
d3bbda1204 Ribosome biogenesis protein NEP1 {Methanococcus ja 100.0
d1o6da_147 Hypothetical protein TM0844 {Thermotoga maritima [ 90.65
d1vh0a_157 Hypothetical protein SAV0024/SA0023 {Staphylococcu 85.64
d1to0a_157 Hypothetical protein YydA {Bacillus subtilis [TaxI 84.6
>d2v3ka1 c.116.1.6 (A:25-251) Essential for mitotic growth 1, EMG1 {Saccharomyces cerevisiae [TaxId: 4932]} Back     information, alignment and structure
class: Alpha and beta proteins (a/b)
fold: alpha/beta knot
superfamily: alpha/beta knot
family: EMG1/NEP1-like
domain: Essential for mitotic growth 1, EMG1
species: Saccharomyces cerevisiae [TaxId: 4932]

Probab=100.00  E-value=4.4e-75  Score=525.32  Aligned_cols=210  Identities=40%  Similarity=0.712  Sum_probs=194.6

Q ss_pred             CCCCCCcCCCCCcEEEEecCCccceeec------CCeeeecCchhhHHHHHhCCCCCCCCCCcHHHHHHHHhhcchhhhc
Q 022175           76 PIAPSDQNTKRPGVIFVLEKASLEVAKV------GKSYQILNSDDHSNFLRRNNKNPADYRPDIVHQALLSILDSRLTKA  149 (301)
Q Consensus        76 p~~~~~~~~~~~~livVLe~A~LE~~K~------gk~~~LLn~d~H~~~mrkl~~~~~~gRPDIvHq~LL~lLDSPLNKa  149 (301)
                      |.....++++++||||||++|+||++|+      |++|+|||+|+|+++|++++++++||||||||||||+||||||||+
T Consensus         4 ~~~~~~~~~~~~~l~~vL~~a~Le~~k~~~~~~~~~~~~LL~~~~H~~~m~~~~~~~~~~RPDIvH~~LL~l~dSpLnk~   83 (227)
T d2v3ka1           4 PPVLTSKDKITKRMIVVLAMASLETHKISSNGPGGDKYVLLNCDDHQGLLKKMGRDISEARPDITHQCLLTLLDSPINKA   83 (227)
T ss_dssp             CCCCCTTCSSSCCEEEEEEEECCCEECC---------CEECCTTTCHHHHHHTTCCGGGCCHHHHHHHHHHHHTSHHHHT
T ss_pred             CCCCCccCCCCceEEEEECCCcceeeeeccccCCCCccEecccHHHHHHHHHcCCcccccCcCHHHHHHHHHhcChhhhc
Confidence            3333444467899999999999999997      4579999999999999999999999999999999999999999999


Q ss_pred             CCccEEEEEecCCeEEEEcCCCCCCCChhhHHHHHHHHHHhCcccccccccceEEEEecccccccCCCCeEEEEeccCcc
Q 022175          150 GRLQAVYVRTDKGVLFEVKPHVRLPRTYKRFAGIMLQLLQKLSITAVGKREKLLRVIKNPVTQYLPVNSRKIGFSYSSEK  229 (301)
Q Consensus       150 G~Lq~VYIhT~~gvlIeV~P~~RIPRtykRF~GLM~QLL~k~~I~a~~~~e~LLkviknpLtd~Lp~g~~kI~LS~~~g~  229 (301)
                      |+|| |||||.+|+||+|||++||||||+||+|||+|||++++|++++++++||++++||+++|+|.|+++|+||+ +|+
T Consensus        84 g~L~-VyihT~~~~lI~V~p~~RvPrty~rF~gLm~qLl~~~~i~~~~~~~~Ll~vikn~Itd~lp~~~k~I~LS~-~G~  161 (227)
T d2v3ka1          84 GKLQ-VYIQTSRGILIEVNPTVRIPRTFKRFSGLMVQLLHKLSIRSVNSEEKLLKVIKNPITDHLPTKCRKVTLSF-DAP  161 (227)
T ss_dssp             TCEE-EEEEETTSCEEEECTTCCCCSSHHHHHHHHHHHHHHSEEECTTTCSEEEEEECSCGGGTSCSSEEEEEECT-TSC
T ss_pred             CceE-EEEEecCCEEEEECCCCcCCCCHHHHHHHHHHHHHhCccccCCCccceeeeeccccccccCCCCeEEEECC-CCC
Confidence            9999 99999999999999999999999999999999999999999888999999999999999999999999995 588


Q ss_pred             ccchhhHHhhhCCCCCeEEEECccccCCCcCCCcceeeee-ecccchhh--hhhhhhhhhh
Q 022175          230 LVKMRNYVASISDDDNLVFVVCSEVISAYIYGDLFFHIYI-LSDINLYF--SCLSFHVRLV  287 (301)
Q Consensus       230 ~v~l~e~v~~l~~~~~ivfvVGafahGdf~~~d~~~~~~i-~S~~~l~~--a~~~~~~~~~  287 (301)
                      .+++.+|++.++++.++|||||||||||+++.+.++++.+ ||||+|||  .||++|.+.-
T Consensus       162 ~~~~~~l~~~l~~~~~v~~viG~f~~GD~~~~~~yide~ISIsdypLSa~~v~sri~~~~E  222 (227)
T d2v3ka1         162 VIRVQDYIEKLDDDESICVFVGAMARGKDNFADEYVDEKVGLSNYPLSASVACSKFCHGAE  222 (227)
T ss_dssp             BCCHHHHHHTSCTTCEEEEEEECSSSSCSCTTTTTCSEEEBSCSSCCCHHHHHHHHHHHHH
T ss_pred             ccCHHHHHHHhccCCCEEEEEeeecCCCccccccccceEEEEeCcchhHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999888888777 99999998  8999998765
>d3bbda1 c.116.1.6 (A:2-205) Ribosome biogenesis protein NEP1 {Methanococcus jannaschii [TaxId: 2190]} Back     information, alignment and structure
>d1o6da_ c.116.1.3 (A:) Hypothetical protein TM0844 {Thermotoga maritima [TaxId: 2336]} Back     information, alignment and structure
>d1vh0a_ c.116.1.3 (A:) Hypothetical protein SAV0024/SA0023 {Staphylococcus aureus [TaxId: 1280]} Back     information, alignment and structure
>d1to0a_ c.116.1.3 (A:) Hypothetical protein YydA {Bacillus subtilis [TaxId: 1423]} Back     information, alignment and structure