Citrus Sinensis ID: 022178

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-
Protein Sequence
MEACCLTSNSFNKTTELVPVSKARVVSYTKRNHNLNHFHCKRVGFSSSITCCHLESSLPSDDHHKPLIDADWRSFRARLVAAEQAIRPQVQEPSVDPDAAVNYPPQSSLGDKWAHTIHEPEKGCLLIATEKLDGVHIFERTVILLLSMEPMGPSGIILNRPSLMSIKEMRSTVLDAAGTFSDRPLFFGGPLEEGLFLVSPKGGGDEVGKSGVFEQVMEGLYFGTKETVGCAAEMVKRNAVGPEDFRFFDGCCGWEKEQLNEEIRAGYWTVAACSPSVIGLESGTLGLWEELLWLMGRRKVW
Secondary Structure (PSIPRED)
cccccccccccccccEEEEcccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccEEEEccccccccccccEEEEEEEEcccccEEEEEcccccccHHHHHHHHHHHccccccccEEEcccccccEEEEEccccccccccccccEEEEccEEEcccccHHHHHHHHHHcccccccEEEEEEEccccHHHHHHHHHcccEEEEEccccccccccccHHHHHHHHHHccccccc
Secondary Structure Prediction (SSPRO)
ccEEEEEcccccccEEEccccccccccccccccHHHHHcccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccEEEEEcccccccccccEEEEEEEEccccccEEEEEcccccccHHHHcHcHHHHHcccccccEEEcccccccEEEEEEccccccccccccEEEEcccEEEcccccHHHHHHHHHcccccHccEEEEEEEccccHHHHHHHHHcccEEEEccccccEEEccccHHHHHHHHHHHcccccc
Coil and Loop (DISEMBL)
meaccltsnsfnkttelvpvskARVVSYTkrnhnlnhfhckrvgfsssitcchlesslpsddhhkplidADWRSFRARLVAAEQairpqvqepsvdpdaavnyppqsslgdkwahtihepekgCLLIATEKLDGVHIFERTVILLLsmepmgpsgiilnrpslmSIKEMRSTVLdaagtfsdrplffggpleeglflvspkgggdevgkSGVFEQVMEGLYFGTKETVGCAAEMvkrnavgpedfrffdgccgwekEQLNEEIRAGYWTvaacspsviglesgtlGLWEELLWLMGRRKVW
Flexible Loop (DISEMBL)
meaccltsnsfnkttelvpvsKARVVSYTkrnhnlnhfhckrVGFSSSITCCHLEsslpsddhhkPLIDADWRSFRARLVAAEQAIrpqvqepsvdpdAAVNYPPQSSLGDKWAHTIHEPEKGCLLIATEKLDGVHIFERTVILLLSMEPMGPSGIILNRPSLMSIKEMRSTVLDAAGTFSDRPLFFGGPLEEGLFLVSPKGGGDEVGKSGVFEQVMEGLYFGTKETVGCAAEMVKRNAVGPEDFRFFDGCCGWEKEQLNEEIRAGYWTVAACSPSVIGLESGTLGLWEELLWLMGRRKVW
Low Complexity Region (SEG)
MEACCLTSNSFNKTTELVPVSKARVVSYTKRNHNLNHFHCKRVGFSSSITCCHLESSLPSDDHHKPLIDADWRSFRARLVAAEQAIRPQVQEPSVDPDAAVNYPPQSSLGDKWAHTIHEPEKGCLLIATEKLDGVHIFERTVILLLSMEPMGPSGIILNRPSLMSIKEMRSTVLDAAGTFSDRPLFFGGPLEEGLFLVSPKGGGDEVGKSGVFEQVMEGLYFGTKETVGCAAEMVKRNAVGPEDFRFFDGCCGWEKEQLNEEIRAGYWTVAACSPSVIglesgtlglweellwlMGRRKVW
Disordered region (IsUnstruct)
****CLTSNSFNKTTELVPVSKARVVSYTKRNHNLNHFHCKRVGFSSSITCCHLESS*******KPLIDADWRSFRARLVAA****************************DKWAHTIHEPEKGCLLIATEKLDGVHIFERTVILLLSMEPMGPSGIILNRPSLMSIKEMRSTVLDAAGTFSDRPLFFGGPLEEGLFLVSPKGGGDEVGKSGVFEQVMEGLYFGTKETVGCAAEMVKRNAVGPEDFRFFDGCCGWEKEQLNEEIRAGYWTVAACSPSVIGLESGTLGLWEELLWLMGR****
Disordered Region (DISOPRED)
***C****NSF***********************************************************DWRSFRA***************************************IHEPEKGCLLIATEKLDGVHIFERTVILLLSMEPMGPSGIILNRPSLMSIKEMRSTVLDAAGTFSDRPLFFGGPLEEGLFLVSPKGGGDEVGKSGVFEQVMEGLYFGTKETVGCAAEMV***AVGPEDFRFFDGCCGWEKEQLNEEIRAGYWTVAACSPSVIGLESGTLGLWEELLWLMGRRKVW
Disordered Region (DISEMBL)
MEACCLTSNSFNKTTELVPVSKARVVSYTKRNHNLNHFHCKRVGFSSSITCCHLESSLPSDDHHKPLIDADWRSFRARLVAAEQAIRPQVQEPSVDPDAAVNYPPQSSLGDKWAHTIHEPEKGCLLIATEKLDGVHIFERTVILLLSMEPMGPSGIILNRPSLMSIKEMRSTVLDAAGTFSDRPLFFGGPLEEGLFLVSPKGGGDEVGKSGVFEQVMEGLYFGTKETVGCAAEMVKRNAVGPEDFRFFDGCCGWEKEQLNEEIRAGYWTVAACSPSVIGLESGTLGLWEELLWLMGRRKVW
Disordered Region (DISPRO)
*EACCLTSNSFNKTTELVPVSKARVVSYTKRNHNLNHFHCK**************************IDADWRSFRARLVAAEQAI********************SSLGDKWAHTIHEPEKGCLLIATEKLDGVHIFERTVILLLSMEPMGPSGIILNRPSLMSIKEMRSTVLDAAGTFSDRPLFFGGPLEEGLFLVSPKGGGDEVGKSGVFEQVMEGLYFGTKETVGCAAEMVKRNAVGPEDFRFFDGCCGWEKEQLNEEIRAGYWTVAACSPSVIGLESGTLGLWEELLWLMGRRKVW
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MEACCLTSNSFNKTTELVPVSKARVVSYTKRNHNLNHFHCKRVGFSSSITCCHLESSLPSDDHHKPLIDADWRSFRARLVAAEQAIRPQVQEPSVDPDAAVNYPPQSSLGDKWAHTIHEPEKGCLLIATEKLDGVHIFERTVILLLSMEPMGPSGIILNRPSLMSIKEMRSTVLDAAGTFSDRPLFFGGPLEEGLFLVSPKGGGDEVGKSGVFEQVMEGLYFGTKETVGCAAEMVKRNAVGPEDFRFFDGCCGWEKEQLNEEIRAGYWTVAACSPSVIGLESGTLGLWEELLWLMGRRKVW
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	301	2.2.26 [Sep-21-2011]
Q3B561	189	UPF0301 protein Plut_0637	yes	no	0.461	0.735	0.341	1e-11
Q12KS3	184	UPF0301 protein Sden_2674	yes	no	0.521	0.853	0.303	2e-08
B3EHS7	187	UPF0301 protein Clim_0777	yes	no	0.468	0.754	0.301	2e-08
B3QMC9	187	UPF0301 protein Cpar_0662	yes	no	0.451	0.727	0.314	3e-08
A6LBX4	198	UPF0301 protein BDI_1431	yes	no	0.578	0.878	0.270	4e-08
Q3AQ69	188	UPF0301 protein Cag_1601	yes	no	0.491	0.787	0.299	4e-08
A1BEV6	187	UPF0301 protein Cpha266_0	yes	no	0.471	0.759	0.308	5e-08
B0BSN9	186	UPF0301 protein APJL_0237	yes	no	0.558	0.903	0.251	5e-08
B3H074	186	UPF0301 protein APP7_0234	yes	no	0.558	0.903	0.251	5e-08
A3MYV4	186	UPF0301 protein APL_0232	yes	no	0.558	0.903	0.251	5e-08

>sp|Q3B561|Y637_PELLD UPF0301 protein Plut_0637 OS=Pelodictyon luteolum (strain DSM 273) GN=Plut_0637 PE=3 SV=1

 Score = 70.5 bits (171), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 55/161 (34%), Positives = 78/161 (48%), Gaps = 22/161 (13%)

Query: 123 GCLLIATEKLDGVHIFERTVILLLSMEPMGPSGIILNRPSLMSIKEMRSTVLDAAGTFS- 181
           G LLIA+  L   + F+RTV+++    P G  G ILNRP       M   V +A   F  
Sbjct: 13  GKLLIASANLLESN-FKRTVLMMCEHNPQGSLGFILNRP-------MEFQVREAVAGFDE 64

Query: 182 -DRPLFFGGPLEEGL--FLVSPKGGGDEVGKSGVFEQVMEGLYFG-TKETVGCAAEMVKR 237
            D PL  GGP++     FL      GD +  S   EQ++ GLY+G  +E +G    ++  
Sbjct: 65  VDEPLHMGGPVQSNTVHFLHMR---GDLIDGS---EQILPGLYWGGDREELGY---LLNT 115

Query: 238 NAVGPEDFRFFDGCCGWEKEQLNEEIRAGYWTVAACSPSVI 278
             + P + RFF G  GW   QL  E   G W  A  +P+++
Sbjct: 116 GVLKPSEIRFFLGYAGWSAGQLEAEFEEGSWYTADATPAMV 156

Pelodictyon luteolum (strain DSM 273) (taxid: 319225)

>sp|Q12KS3|Y2674_SHEDO UPF0301 protein Sden_2674 OS=Shewanella denitrificans (strain OS217 / ATCC BAA-1090 / DSM 15013) GN=Sden_2674 PE=3 SV=1

 Score = 60.5 bits (145), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 57/188 (30%), Positives = 86/188 (45%), Gaps = 31/188 (16%)

Query: 122 KGCLLIATEKLDGVHIFERTVILLLSMEPMGPSGIILNRPSLMSIKEMRSTV-LDAAGTF 180
           K  LLIA   LDG   FERTVI +   +  G  GI++NRP  +S++ +   + LDA    
Sbjct: 5   KNHLLIAMPSLDG-SFFERTVIYVCEHDEKGAMGIVINRPIGLSVEALLIQMDLDAEANL 63

Query: 181 SDRP-LFFGGPL--EEGLFLVSPKGGGDEVGKSGVFEQVMEGLYFGTKETVGCAAEMVKR 237
           SD   +  GGP+  + G  L SP+    +V  +   E V +     T   +         
Sbjct: 64  SDDAQVLIGGPVLPDRGFVLHSPE----KVWTNS--EAVSDYCTLTTSRDI--------L 109

Query: 238 NAVG----PEDFRFFDGCCGWEKEQLNEEIRAGYW-TVAACSPSVIGLESGTLGLWEELL 292
           NA+G    P  F+   G  GW K+QL +E+    W T+ A S  V  ++        E L
Sbjct: 110 NAIGSADAPSQFKVALGYSGWSKDQLEQELADNTWLTIKASSELVFDVDY-------EQL 162

Query: 293 WLMGRRKV 300
           W +  +++
Sbjct: 163 WTLATKEL 170

Shewanella denitrificans (strain OS217 / ATCC BAA-1090 / DSM 15013) (taxid: 318161)

>sp|B3EHS7|Y777_CHLL2 UPF0301 protein Clim_0777 OS=Chlorobium limicola (strain DSM 245 / NBRC 103803) GN=Clim_0777 PE=3 SV=1

 Score = 60.1 bits (144), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 48/159 (30%), Positives = 74/159 (46%), Gaps = 18/159 (11%)

Query: 123 GCLLIATEKLDGVHIFERTVILLLSMEPMGPSGIILNRPSLMSIKEMRSTVLDAAGTFSD 182
           G LL+A+  L   + F+RTV+L+      G  G ILNRP       M   V +A   F D
Sbjct: 11  GKLLLASANLLESN-FKRTVLLMCEHNEQGSMGFILNRP-------MEFKVCEAIAGFED 62

Query: 183 --RPLFFGGPLE-EGLFLVSPKGGGDEVGKSGVFEQVMEGLYFGTKETVGCAAEMVKRNA 239
              PL  GGP++ + +  +  +G   + G   +F+ V  G   G K+ +   + ++    
Sbjct: 63  IEEPLHMGGPVQVDTVHFIHSRGDSID-GAIEIFDGVFWG---GDKDQL---SYLINTGV 115

Query: 240 VGPEDFRFFDGCCGWEKEQLNEEIRAGYWTVAACSPSVI 278
           + P + RFF G  GW   QL +E   G W  A  +  +I
Sbjct: 116 INPNEIRFFLGYSGWGAGQLEQEFEEGSWYTADATREMI 154

Chlorobium limicola (strain DSM 245 / NBRC 103803) (taxid: 290315)

>sp|B3QMC9|Y662_CHLP8 UPF0301 protein Cpar_0662 OS=Chlorobaculum parvum (strain NCIB 8327) GN=Cpar_0662 PE=3 SV=1

 Score = 59.3 bits (142), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 49/156 (31%), Positives = 76/156 (48%), Gaps = 20/156 (12%)

Query: 123 GCLLIATEKLDGVHIFERTVILLLSMEPMGPSGIILNRPSLMSIKEMRSTVLDAAGTFS- 181
           G LLIA+  L   + F+RTV+L+      G  G ILN+P       M   V +A   F  
Sbjct: 11  GKLLIASANLLESN-FKRTVLLMCEHNDEGSIGFILNKP-------MEFKVCEAISGFDE 62

Query: 182 -DRPLFFGGPLE-EGLFLVSPKGGGDEVGKSGVFEQVMEGLYFG-TKETVGCAAEMVKRN 238
            D PL  GGP++ + +  +  +G  D +  +   ++V+ GL++G  KE +   + ++   
Sbjct: 63  IDEPLHMGGPVQVDTVHFLHTRG--DVIDDA---QEVLPGLFWGGDKEQL---SYLINTG 114

Query: 239 AVGPEDFRFFDGCCGWEKEQLNEEIRAGYWTVAACS 274
            + P + RFF G  GW   QL +E   G W  A  S
Sbjct: 115 VIRPSEVRFFLGYAGWSAGQLKDEFEEGSWYTADAS 150

Chlorobaculum parvum (strain NCIB 8327) (taxid: 517417)

>sp|A6LBX4|Y1431_PARD8 UPF0301 protein BDI_1431 OS=Parabacteroides distasonis (strain ATCC 8503 / DSM 20701 / NCTC 11152) GN=BDI_1431 PE=3 SV=1

 Score = 59.3 bits (142), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 53/196 (27%), Positives = 89/196 (45%), Gaps = 22/196 (11%)

Query: 112 KWAHTIHEPEKGCLLIATEKLDGVHIFERTVILLLSMEPMGPSGIILNRPSLMSIKEMRS 171
           K  H    P +G +LIA   L   + F+R+V+LL+     G  G +LN+ + + +    +
Sbjct: 9   KITHNDVLPIQGSILIAEPFLQDAY-FQRSVVLLIEHTEHGSMGFVLNKKTDLIV----N 63

Query: 172 TVLDAAGTFSDRPLFFGGPLEEG-LFLVSPKGGGDEVGKSGVFEQVMEGLYFGTKETVGC 230
           +       F + P++ GGP+    LF +   G  D +    +  ++ + LYF        
Sbjct: 64  SFFKEFAEFPEIPIYLGGPVSPNRLFFIHSLG--DNIIPDAL--KINDYLYFDGD----- 114

Query: 231 AAEMVKRNAVG--PED--FRFFDGCCGWEKEQLNEEIRAGYWTVAACSPSVIGLESGTLG 286
               +KR  +   P D   +FF G  GW + QLN EI+   W V+  +   I L +   G
Sbjct: 115 -FNALKRYILNGHPIDGKVKFFLGYSGWTEGQLNHEIKRNSWAVSHITTDNI-LSADGEG 172

Query: 287 LWEELLWLMGR-RKVW 301
            W++ + L+G   K W
Sbjct: 173 YWKDSVELLGNDYKTW 188

Parabacteroides distasonis (strain ATCC 8503 / DSM 20701 / NCTC 11152) (taxid: 435591)

>sp|Q3AQ69|Y1601_CHLCH UPF0301 protein Cag_1601 OS=Chlorobium chlorochromatii (strain CaD3) GN=Cag_1601 PE=3 SV=1

 Score = 58.9 bits (141), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 50/167 (29%), Positives = 80/167 (47%), Gaps = 19/167 (11%)

Query: 117 IHEPEK---GCLLIATEKLDGVHIFERTVILLLSMEPMGPSGIILNRPSLMSIKEMRSTV 173
           ++E EK   G LL+A+  +   + F+RTV+L+      G  G ILNRP    ++E     
Sbjct: 3   VNEFEKLTAGKLLLASATMLESN-FKRTVLLMCEHNEEGSLGFILNRPLEFKVREAIHGF 61

Query: 174 LDAAGTFSDRPLFFGGPLE-EGLFLVSPKGGGDEVGKSGVFEQVMEGLYFG-TKETVGCA 231
            D      D  L  GGP++   +  +  +G  D +  S   ++V+ G+Y+G  K+ V   
Sbjct: 62  NDV-----DDVLHQGGPVQVNSIHFLHSRG--DLIHNS---QEVLPGIYWGGNKDEV--- 108

Query: 232 AEMVKRNAVGPEDFRFFDGCCGWEKEQLNEEIRAGYWTVAACSPSVI 278
           + ++    + P + RF+ G  GW   QL  E   G W  A  +P VI
Sbjct: 109 SYLLNTGVMHPSEIRFYLGYAGWSAGQLFSEFEEGAWYTAEATPDVI 155

Chlorobium chlorochromatii (strain CaD3) (taxid: 340177)

>sp|A1BEV6|Y885_CHLPD UPF0301 protein Cpha266_0885 OS=Chlorobium phaeobacteroides (strain DSM 266) GN=Cpha266_0885 PE=3 SV=1

 Score = 58.9 bits (141), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 50/162 (30%), Positives = 75/162 (46%), Gaps = 20/162 (12%)

Query: 121 EKGCLLIATEKLDGVHIFERTVILLLSMEPMGPSGIILNRPSLMSIKEMRSTVLDAAGTF 180
           + G LL+A+  L   + F+RTV+++      G  G ILNRP       M   V +A   F
Sbjct: 9   QSGKLLLASANLLESN-FKRTVLIICEHNESGSLGFILNRP-------MEFKVCEAVAGF 60

Query: 181 SD--RPLFFGGPLEEGL--FLVSPKGGGDEVGKSGVFEQVMEGLYFGTKETVGCAAEMVK 236
            +   PL  GGP++     FL S    GD +  +    ++  GL++G  +     + ++ 
Sbjct: 61  EEIEEPLHMGGPVQVDTVHFLHSR---GDIIDGA---TEIFPGLFWGGDKN--QVSFLLN 112

Query: 237 RNAVGPEDFRFFDGCCGWEKEQLNEEIRAGYWTVAACSPSVI 278
              + P + RFF G  GW   QL EE   G W +A  S  VI
Sbjct: 113 TGVMQPSEIRFFLGYSGWSAGQLEEEFEIGSWYIAEASRDVI 154

Chlorobium phaeobacteroides (strain DSM 266) (taxid: 290317)

>sp|B0BSN9|Y237_ACTPJ UPF0301 protein APJL_0237 OS=Actinobacillus pleuropneumoniae serotype 3 (strain JL03) GN=APJL_0237 PE=3 SV=1

 Score = 58.5 bits (140), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 46/183 (25%), Positives = 83/183 (45%), Gaps = 15/183 (8%)

Query: 119 EPEKGCLLIATEKLDGVHIFERTVILLLSMEPMGPSGIILNRPSLMSIKE----MRSTVL 174
           E  +G  LIAT ++D  + F+RTVI +      G  G+++N P+ +S+ E    M   + 
Sbjct: 3   ENLQGKFLIATPEIDDDY-FDRTVIYICEHNSNGAMGLVINTPTDLSVLELITRMDFQMA 61

Query: 175 DAAGTFSDRPLFFGGPLEEGL-FLVSPKGGGDEVGKSGVFEQVMEGLYFGTKETVGCAAE 233
           +      D+ +  GGP+ +   F++  K   + +    V + ++        +++G    
Sbjct: 62  NQRNYHKDQMVLSGGPVSQDRGFIIHTKTEQEFLHSYRVTDNILLTTSGDVLDSLG---- 117

Query: 234 MVKRNAVGPEDFRFFDGCCGWEKEQLNEEIRAGYWTVAACSPSVIGLESGTLGLWEELLW 293
                   PE F    GC  W+ EQL +EI   YW ++  +   +  E+G L  W E   
Sbjct: 118 ----KPEAPEKFIVCLGCATWKPEQLEQEIARNYWLISEANDKTL-FETGYLERWVEANE 172

Query: 294 LMG 296
           ++G
Sbjct: 173 MLG 175

Actinobacillus pleuropneumoniae serotype 3 (strain JL03) (taxid: 434271)

>sp|B3H074|Y234_ACTP7 UPF0301 protein APP7_0234 OS=Actinobacillus pleuropneumoniae serotype 7 (strain AP76) GN=APP7_0234 PE=3 SV=1

 Score = 58.5 bits (140), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 46/183 (25%), Positives = 83/183 (45%), Gaps = 15/183 (8%)

Query: 119 EPEKGCLLIATEKLDGVHIFERTVILLLSMEPMGPSGIILNRPSLMSIKE----MRSTVL 174
           E  +G  LIAT ++D  + F+RTVI +      G  G+++N P+ +S+ E    M   + 
Sbjct: 3   ENLQGKFLIATPEIDDDY-FDRTVIYICEHNSNGAMGLVINTPTDLSVLELITRMDFQMA 61

Query: 175 DAAGTFSDRPLFFGGPLEEGL-FLVSPKGGGDEVGKSGVFEQVMEGLYFGTKETVGCAAE 233
           +      D+ +  GGP+ +   F++  K   + +    V + ++        +++G    
Sbjct: 62  NQRNYHKDQMVLSGGPVSQDRGFIIHTKTEQEFLHSYRVTDNILLTTSGDVLDSLG---- 117

Query: 234 MVKRNAVGPEDFRFFDGCCGWEKEQLNEEIRAGYWTVAACSPSVIGLESGTLGLWEELLW 293
                   PE F    GC  W+ EQL +EI   YW ++  +   +  E+G L  W E   
Sbjct: 118 ----KPEAPEKFIVCLGCATWKPEQLEQEIARNYWLISEANDKTL-FETGYLERWVEANE 172

Query: 294 LMG 296
           ++G
Sbjct: 173 MLG 175

Actinobacillus pleuropneumoniae serotype 7 (strain AP76) (taxid: 537457)

>sp|A3MYV4|Y232_ACTP2 UPF0301 protein APL_0232 OS=Actinobacillus pleuropneumoniae serotype 5b (strain L20) GN=APL_0232 PE=3 SV=1

 Score = 58.5 bits (140), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 46/183 (25%), Positives = 83/183 (45%), Gaps = 15/183 (8%)

Query: 119 EPEKGCLLIATEKLDGVHIFERTVILLLSMEPMGPSGIILNRPSLMSIKE----MRSTVL 174
           E  +G  LIAT ++D  + F+RTVI +      G  G+++N P+ +S+ E    M   + 
Sbjct: 3   ENLQGKFLIATPEIDDDY-FDRTVIYICEHNSNGAMGLVINTPTDLSVLELITRMDFQMA 61

Query: 175 DAAGTFSDRPLFFGGPLEEGL-FLVSPKGGGDEVGKSGVFEQVMEGLYFGTKETVGCAAE 233
           +      D+ +  GGP+ +   F++  K   + +    V + ++        +++G    
Sbjct: 62  NQRNYHKDQMVLSGGPVSQDRGFIIHTKTEQEFLHSYRVTDNILLTTSGDVLDSLG---- 117

Query: 234 MVKRNAVGPEDFRFFDGCCGWEKEQLNEEIRAGYWTVAACSPSVIGLESGTLGLWEELLW 293
                   PE F    GC  W+ EQL +EI   YW ++  +   +  E+G L  W E   
Sbjct: 118 ----KPEAPEKFIVCLGCATWKPEQLEQEIARNYWLISEANDKTL-FETGYLERWVEANE 172

Query: 294 LMG 296
           ++G
Sbjct: 173 MLG 175

Actinobacillus pleuropneumoniae serotype 5b (strain L20) (taxid: 416269)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	301
225452924	301	PREDICTED: UPF0301 protein Cpha266_0885-	0.986	0.986	0.740	1e-122
224077720	303	predicted protein [Populus trichocarpa]	0.990	0.983	0.703	1e-116
255584335	304	conserved hypothetical protein [Ricinus	0.986	0.976	0.704	1e-114
356523588	301	PREDICTED: uncharacterized protein LOC10	0.983	0.983	0.667	1e-109
359488956	259	PREDICTED: UPF0301 protein Cpha266_0885-	0.833	0.969	0.770	1e-105
356568698	307	PREDICTED: UPF0301 protein BT_1078-like	0.990	0.970	0.672	1e-104
357502063	291	hypothetical protein MTR_7g011850 [Medic	0.960	0.993	0.634	1e-104
296082969	266	unnamed protein product [Vitis vinifera]	0.873	0.988	0.654	1e-103
297815230	317	hypothetical protein ARALYDRAFT_484691 [	0.976	0.927	0.608	2e-96
18406113	317	uncharacterized protein [Arabidopsis tha	0.976	0.927	0.608	4e-96

>gi|225452924|ref|XP_002284130.1| PREDICTED: UPF0301 protein Cpha266_0885-like isoform 1 [Vitis vinifera]

 Score =  444 bits (1143), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 226/305 (74%), Positives = 255/305 (83%), Gaps = 8/305 (2%)

Query: 1   MEACCLTSNSFNKTTELVPVSKARVVSYTKRNHNLNHFHCKRVGFSSSITCCHLESSLPS 60
           MEAC LTSNSF++T EL+P  KAR ++Y KR  N   F C++  F SSITCCHL SS  S
Sbjct: 1   MEACFLTSNSFSRTIELLPSIKARNLTYPKRKAN--QFQCRKAPFPSSITCCHLGSSSSS 58

Query: 61  DDHHKPLIDADWRSFRARLVAAEQAIRPQVQEPS--VDPDAAVNYPPQSSLGDKWAHTIH 118
           +D  KP I ADWRSFRARLVA EQA R  ++EPS  VDPD+AV++P   ++GDKW HTIH
Sbjct: 59  EDADKPSISADWRSFRARLVAGEQASR--LEEPSSLVDPDSAVDHPLPITIGDKWVHTIH 116

Query: 119 EPEKGCLLIATEKLDGVHIFERTVILLLSMEPMGPSGIILNRPSLMSIKEMRSTVLDAAG 178
           EPEKGCLLIATEKLDGVHIFERTVILLLS  P+GP+GIILNRPSLMSIKE RSTVLD AG
Sbjct: 117 EPEKGCLLIATEKLDGVHIFERTVILLLSTGPVGPTGIILNRPSLMSIKETRSTVLDVAG 176

Query: 179 TFSDRPLFFGGPLEEGLFLV-SPKGGGDEVGKSGVFEQVMEGLYFGTKETVGCAAEMVKR 237
           TFSD PLFFGGP+EEGLFLV SPKG  D V K+G+FE+VM+GLY+GTKE+VGCAAEMVKR
Sbjct: 177 TFSDMPLFFGGPIEEGLFLVNSPKGDDDGVVKTGLFEEVMKGLYYGTKESVGCAAEMVKR 236

Query: 238 NAVGPEDFRFFDGCCGWEKEQLNEEIRAGYWTVAACSPSVIGLES-GTLGLWEELLWLMG 296
           NAV  EDFRFFDG CGWEKEQL +EIRAGYWTVAACSPSVIGL S G++GLWEE++ LMG
Sbjct: 237 NAVAVEDFRFFDGYCGWEKEQLRDEIRAGYWTVAACSPSVIGLTSVGSVGLWEEIIGLMG 296

Query: 297 RRKVW 301
            RKVW
Sbjct: 297 PRKVW 301

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224077720|ref|XP_002305378.1| predicted protein [Populus trichocarpa] gi|222848342|gb|EEE85889.1| predicted protein [Populus trichocarpa]

 Score =  422 bits (1085), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 214/304 (70%), Positives = 240/304 (78%), Gaps = 6/304 (1%)

Query: 1   MEACCLTSNSFNKTTELVPVSKARVVSYTKRNHNLNHFHCKRVGFSSSITCCHLESSLPS 60
           ME C LTSNSF KT EL+P  KARV SY KR+ N   F  KRV  S+SITC H+    PS
Sbjct: 1   MEVCFLTSNSFTKTLELIPSIKARVFSYPKRSSN--AFQSKRVALSTSITCRHMPPPSPS 58

Query: 61  DDHHKPLIDADWRSFRARLVAAEQAIRPQVQEPSVDPDAAVNY-PPQSSLGDKWAHTIHE 119
            D  +PL++ADWRSFRARLVA EQA+RP     + DPD  V+  PPQ ++GDKWAHTIHE
Sbjct: 59  ADDCRPLLEADWRSFRARLVANEQALRPTEPSSTADPDIVVDQQPPQITIGDKWAHTIHE 118

Query: 120 PEKGCLLIATEKLDGVHIFERTVILLLSMEPMGPSGIILNRPSLMSIKEMRSTVLDAAGT 179
           PEKGCLLIATEKLDGVHIFERTVILLLS  P  P GIILNRPSLMSIKEMRST LD AG 
Sbjct: 119 PEKGCLLIATEKLDGVHIFERTVILLLSTGPGSPYGIILNRPSLMSIKEMRSTALDVAGA 178

Query: 180 FSDRPLFFGGPLEEGLFLVSPKGG--GDEVGKSGVFEQVMEGLYFGTKETVGCAAEMVKR 237
           FS+RPLFFGGPLEEGLFLVSP+ G   D V +SGVFE+VM+G+Y+GT+E+ GCAAEM +R
Sbjct: 179 FSNRPLFFGGPLEEGLFLVSPERGYDNDRVAESGVFEEVMKGVYYGTRESAGCAAEMARR 238

Query: 238 NAVGPEDFRFFDGCCGWEKEQLNEEIRAGYWTVAACSPSVIGL-ESGTLGLWEELLWLMG 296
           N VG  DFRFFDG CGWEK QL EEI+AGYW VAACSPSVIGL + GTLGL EE+LWLMG
Sbjct: 239 NVVGLGDFRFFDGYCGWEKGQLKEEIQAGYWAVAACSPSVIGLNKEGTLGLREEVLWLMG 298

Query: 297 RRKV 300
            + V
Sbjct: 299 LKNV 302

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255584335|ref|XP_002532903.1| conserved hypothetical protein [Ricinus communis] gi|223527337|gb|EEF29483.1| conserved hypothetical protein [Ricinus communis]

 Score =  416 bits (1068), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 217/308 (70%), Positives = 239/308 (77%), Gaps = 11/308 (3%)

Query: 1   MEACCL--TSNSFNKTTELVPVSKARVVSYTKRNHNLNHFHCKRVGFSSSITCCHLESSL 58
           ME  C   +SNSF KT ELVP  KAR  SY +R    NHF CKR G SSSITCC    S 
Sbjct: 1   METYCFLSSSNSFTKTIELVPSIKARPFSYPRRTFT-NHFQCKRTGLSSSITCCR---SS 56

Query: 59  PSDDHHKPLIDADWRSFRARLVAAEQAIRPQVQEPSVDPDAAV--NYPPQSSLGDKWAHT 116
           PS D ++P ++ADWRSFRARLVA EQ  R      +VDPD AV  ++  + +  DKWAH 
Sbjct: 57  PSGDEYQPYLEADWRSFRARLVANEQVFRLSESCSAVDPDTAVEMDHSLRVACADKWAHA 116

Query: 117 IHEPEKGCLLIATEKLDGVHIFERTVILLLSMEPMGPSGIILNRPSLMSIKEMRSTVLDA 176
           IHEPEKGC+LIATEKLDGVHIFERTVILLLS+ P+GP GIILNRPSLMSIKEMRSTVLD 
Sbjct: 117 IHEPEKGCILIATEKLDGVHIFERTVILLLSVGPVGPYGIILNRPSLMSIKEMRSTVLDD 176

Query: 177 AGTFSDRPLFFGGPLEEGLFLVSPKGG--GDEVGKSGVFEQVMEGLYFGTKETVGCAAEM 234
           AG FSDRPLFFGGPLEEGLFLVSPK G   D VGKSGVFE+VM+G+Y+GTKE+ GCAAEM
Sbjct: 177 AGMFSDRPLFFGGPLEEGLFLVSPKRGYDNDRVGKSGVFEEVMKGMYYGTKESAGCAAEM 236

Query: 235 VKRNAVGPEDFRFFDGCCGWEKEQLNEEIRAGYWTVAACSPSVIGLES-GTLGLWEELLW 293
           VKRN VG  DFRFFDG CGWEK+QL EEI AGYWTVAACS SVIGL   GT GLWEE+  
Sbjct: 237 VKRNVVGIGDFRFFDGHCGWEKDQLREEIAAGYWTVAACSSSVIGLHHVGTRGLWEEIHG 296

Query: 294 LMGRRKVW 301
           LMG +KVW
Sbjct: 297 LMGPKKVW 304

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356523588|ref|XP_003530419.1| PREDICTED: uncharacterized protein LOC100783218 [Glycine max]

 Score =  400 bits (1029), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 203/304 (66%), Positives = 238/304 (78%), Gaps = 8/304 (2%)

Query: 1   MEACCLTSNSFNKTT-ELVPVSKARVVSYTKRNHNLNHFHCKRVGFSSSITCCHLESSLP 59
           MEAC L+ NSF KTT +L+P  +   + + KR+    H  C++      I+CCH+ S  P
Sbjct: 1   MEACFLSHNSFTKTTDQLIPTIRNGSLPHHKRSSQ--HLQCRKARIPLPISCCHMSSPSP 58

Query: 60  SDDHHKPLIDADWRSFRARLVAAEQAIRPQVQEPSVDPDAAVNYPPQSSLGDKWAHTIHE 119
             D  KP + +DWRSFRA+LVA EQ  R  V+E + D D  V++PP  ++GDKWAH IHE
Sbjct: 59  FGDDDKPTLSSDWRSFRAKLVAGEQLTR-HVEEVN-DLDTVVDHPPLITIGDKWAHVIHE 116

Query: 120 PEKGCLLIATEKLDGVHIFERTVILLLSMEPMGPSGIILNRPSLMSIKEMRSTVLDAAGT 179
           PE GCLLIATEKLDGVHIFERTVILLLS  P+GPSGIILNRPSLMSIKE RST LD  GT
Sbjct: 117 PENGCLLIATEKLDGVHIFERTVILLLSTGPLGPSGIILNRPSLMSIKETRSTALDVEGT 176

Query: 180 FSDRPLFFGGPLEEGLFLVSPK--GGGDEVGKSGVFEQVMEGLYFGTKETVGCAAEMVKR 237
           FS+ PLFFGGPLEEG+FL+SPK   GGD VGKSGVFE+VM+GLY+G KE+VGCAAEMVKR
Sbjct: 177 FSNSPLFFGGPLEEGIFLLSPKEGNGGDGVGKSGVFEEVMKGLYYGAKESVGCAAEMVKR 236

Query: 238 NAVGPEDFRFFDGCCGWEKEQLNEEIRAGYWTVAACSPSVIGLES-GTLGLWEELLWLMG 296
           NA+G  DFRFFDG CGWEKEQL +EIRAGYWTVAACSPSV+GL S G++GLW+E+L LM 
Sbjct: 237 NAIGLGDFRFFDGYCGWEKEQLRDEIRAGYWTVAACSPSVVGLGSVGSIGLWDEVLGLMS 296

Query: 297 RRKV 300
           RRKV
Sbjct: 297 RRKV 300

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359488956|ref|XP_003633846.1| PREDICTED: UPF0301 protein Cpha266_0885-like isoform 2 [Vitis vinifera]

 Score =  389 bits (998), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 198/257 (77%), Positives = 220/257 (85%), Gaps = 6/257 (2%)

Query: 49  ITCCHLESSLPSDDHHKPLIDADWRSFRARLVAAEQAIRPQVQEPS--VDPDAAVNYPPQ 106
           I  CHL SS  S+D  KP I ADWRSFRARLVA EQA R  ++EPS  VDPD+AV++P  
Sbjct: 5   IVGCHLGSSSSSEDADKPSISADWRSFRARLVAGEQASR--LEEPSSLVDPDSAVDHPLP 62

Query: 107 SSLGDKWAHTIHEPEKGCLLIATEKLDGVHIFERTVILLLSMEPMGPSGIILNRPSLMSI 166
            ++GDKW HTIHEPEKGCLLIATEKLDGVHIFERTVILLLS  P+GP+GIILNRPSLMSI
Sbjct: 63  ITIGDKWVHTIHEPEKGCLLIATEKLDGVHIFERTVILLLSTGPVGPTGIILNRPSLMSI 122

Query: 167 KEMRSTVLDAAGTFSDRPLFFGGPLEEGLFLV-SPKGGGDEVGKSGVFEQVMEGLYFGTK 225
           KE RSTVLD AGTFSD PLFFGGP+EEGLFLV SPKG  D V K+G+FE+VM+GLY+GTK
Sbjct: 123 KETRSTVLDVAGTFSDMPLFFGGPIEEGLFLVNSPKGDDDGVVKTGLFEEVMKGLYYGTK 182

Query: 226 ETVGCAAEMVKRNAVGPEDFRFFDGCCGWEKEQLNEEIRAGYWTVAACSPSVIGLES-GT 284
           E+VGCAAEMVKRNAV  EDFRFFDG CGWEKEQL +EIRAGYWTVAACSPSVIGL S G+
Sbjct: 183 ESVGCAAEMVKRNAVAVEDFRFFDGYCGWEKEQLRDEIRAGYWTVAACSPSVIGLTSVGS 242

Query: 285 LGLWEELLWLMGRRKVW 301
           +GLWEE++ LMG RKVW
Sbjct: 243 VGLWEEIIGLMGPRKVW 259

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356568698|ref|XP_003552547.1| PREDICTED: UPF0301 protein BT_1078-like [Glycine max]

 Score =  383 bits (984), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 207/308 (67%), Positives = 240/308 (77%), Gaps = 10/308 (3%)

Query: 1   MEACCLTSNSFNKTT-ELVPVSKARVVSYTKRNHNLNHFHCKRVGFSSSITCCHLESSLP 59
           MEAC L+ NSF KTT +L+P  +   + + KR+    HFH ++      I+CCH+ S  P
Sbjct: 1   MEACFLSHNSFTKTTDQLIPTIRNGSLPHPKRSSQ--HFHYRKARIPLPISCCHMSSPSP 58

Query: 60  SDDHHKPLIDADWRSFRARLVAAEQAIRP--QVQEPSV-DPDAAVNYPPQSSLGDKWAHT 116
            DD  K  +  DWRSFRA+LVA EQ  RP  +V   SV D D  V++PP  ++GDKWAH 
Sbjct: 59  FDDDEKSTLSGDWRSFRAKLVAGEQLTRPVEEVSFSSVNDLDIVVDHPPLITIGDKWAHV 118

Query: 117 IHEPEKGCLLIATEKLDGVHIFERTVILLLSMEPMGPSGIILNRPSLMSIKEMRSTVLDA 176
           IHEPEKGC+LIATEKLDGVHIFERTVILLLS  P+GPSGIILNRPSLMSIKE RST LD 
Sbjct: 119 IHEPEKGCILIATEKLDGVHIFERTVILLLSTGPLGPSGIILNRPSLMSIKETRSTALDV 178

Query: 177 AGTFSDRPLFFGGPLEEGLFLVSPK---GGGDEVGKSGVFEQVMEGLYFGTKETVGCAAE 233
            GTFS+ PLFFGGPLEEGLFL+SPK   GGGD VGKSGVFE+VM+GLY+G KE+VGCAAE
Sbjct: 179 EGTFSNSPLFFGGPLEEGLFLLSPKEGGGGGDGVGKSGVFEEVMKGLYYGAKESVGCAAE 238

Query: 234 MVKRNAVGPEDFRFFDGCCGWEKEQLNEEIRAGYWTVAACSPSVIGLES-GTLGLWEELL 292
           MVKRN +G  DFRFFDG CGWEKEQL +EIRAGYWTVAACSPSV+GL S G++GLW+E+L
Sbjct: 239 MVKRNVIGLGDFRFFDGYCGWEKEQLRDEIRAGYWTVAACSPSVVGLGSVGSVGLWDEVL 298

Query: 293 WLMGRRKV 300
            LM RRKV
Sbjct: 299 GLMSRRKV 306

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357502063|ref|XP_003621320.1| hypothetical protein MTR_7g011850 [Medicago truncatula] gi|355496335|gb|AES77538.1| hypothetical protein MTR_7g011850 [Medicago truncatula]

 Score =  383 bits (984), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 191/301 (63%), Positives = 233/301 (77%), Gaps = 12/301 (3%)

Query: 1   MEACCLTSNSFNKTTELVPVSKARVVSYTKRNHNLNHFHCKRVGFSSSITCCHLESSLPS 60
           M+AC L+ +SF K        +   + Y+KR  +   F+ ++VG    ++CC++ SS PS
Sbjct: 1   MDACFLSHSSFTKI-------RGGSLPYSKRFSH-QQFNSRKVGIPFHVSCCNMSSSSPS 52

Query: 61  DDHHKPLIDADWRSFRARLVAAEQAIRPQVQEPSVDPDAAVNYPPQSSLGDKWAHTIHEP 120
           DD  KP ++ DWRSFRA+LVA EQ ++P+    + +PD  V++PP  ++GDKWAH IHEP
Sbjct: 53  DDE-KPTLNTDWRSFRAKLVAGEQLLKPEFLSSATNPDTVVDHPPLITIGDKWAHVIHEP 111

Query: 121 EKGCLLIATEKLDGVHIFERTVILLLSMEPMGPSGIILNRPSLMSIKEMRSTVLDAAGTF 180
           E+GCLLIATEKLDGVHIFERTVILLLS  P+GPSGIILNRPSLMSIKE RST  D  GTF
Sbjct: 112 ERGCLLIATEKLDGVHIFERTVILLLSNGPIGPSGIILNRPSLMSIKETRSTAFDVMGTF 171

Query: 181 SDRPLFFGGPLEEGLFLVSPKGGGDEVGKSGVFEQVMEGLYFGTKETVGCAAEMVKRNAV 240
           S+ PL+FGGPLEEGLFLVSPK   D VGKSGVF++VM+GLY+GTKE+VG AAEMVKRN V
Sbjct: 172 SNSPLYFGGPLEEGLFLVSPK--DDVVGKSGVFDEVMKGLYYGTKESVGLAAEMVKRNVV 229

Query: 241 GPEDFRFFDGCCGWEKEQLNEEIRAGYWTVAACSPSVIGLES-GTLGLWEELLWLMGRRK 299
              DFRFFDG CGWEKEQL +EIR GYWTVAACSPSV+ L + G +GLW+E+L LMG+RK
Sbjct: 230 EVGDFRFFDGYCGWEKEQLRDEIRDGYWTVAACSPSVVDLGNVGIVGLWDEVLGLMGKRK 289

Query: 300 V 300
           V
Sbjct: 290 V 290

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|296082969|emb|CBI22270.3| unnamed protein product [Vitis vinifera]

 Score =  379 bits (973), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 199/304 (65%), Positives = 227/304 (74%), Gaps = 41/304 (13%)

Query: 1   MEACCLTSNSFNKTTELVPVSKARVVSYTKRNHNLNHFHCKRVGFSSSITCCHLESSLPS 60
           MEAC LTSNSF++T EL+P  KAR ++Y KR  N   F C++  F SSITCCHL SS  S
Sbjct: 1   MEACFLTSNSFSRTIELLPSIKARNLTYPKRKAN--QFQCRKAPFPSSITCCHLGSSSSS 58

Query: 61  DDHHKPLIDADWRSFRARLVAAEQAIRPQVQEPS--VDPDAAVNYPPQSSLGDKWAHTIH 118
           +D  KP I ADWRSFRARLVA EQA R  ++EPS  VDPD+AV++P   ++GDKW HTIH
Sbjct: 59  EDADKPSISADWRSFRARLVAGEQASR--LEEPSSLVDPDSAVDHPLPITIGDKWVHTIH 116

Query: 119 EPEKGCLLIATEKLDGVHIFERTVILLLSMEPMGPSGIILNRPSLMSIKEMRSTVLDAAG 178
           EPEKGCLLIATEKLDGVHIFERTVILLLS  P+GP+GIILNRPSLMSIKE RSTVLD   
Sbjct: 117 EPEKGCLLIATEKLDGVHIFERTVILLLSTGPVGPTGIILNRPSLMSIKETRSTVLD--- 173

Query: 179 TFSDRPLFFGGPLEEGLFLVSPKGGGDEVGKSGVFEQVMEGLYFGTKETVGCAAEMVKRN 238
                                          +G+FE+VM+GLY+GTKE+VGCAAEMVKRN
Sbjct: 174 -------------------------------TGLFEEVMKGLYYGTKESVGCAAEMVKRN 202

Query: 239 AVGPEDFRFFDGCCGWEKEQLNEEIRAGYWTVAACSPSVIGLES-GTLGLWEELLWLMGR 297
           AV  EDFRFFDG CGWEKEQL +EIRAGYWTVAACSPSVIGL S G++GLWEE++ LMG 
Sbjct: 203 AVAVEDFRFFDGYCGWEKEQLRDEIRAGYWTVAACSPSVIGLTSVGSVGLWEEIIGLMGP 262

Query: 298 RKVW 301
           RKVW
Sbjct: 263 RKVW 266

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297815230|ref|XP_002875498.1| hypothetical protein ARALYDRAFT_484691 [Arabidopsis lyrata subsp. lyrata] gi|297321336|gb|EFH51757.1| hypothetical protein ARALYDRAFT_484691 [Arabidopsis lyrata subsp. lyrata]

 Score =  358 bits (919), Expect = 2e-96,   Method: Compositional matrix adjust.
 Identities = 190/312 (60%), Positives = 224/312 (71%), Gaps = 18/312 (5%)

Query: 1   MEACCLTSNSFNKTTELVPVSKARVVSYTKRNHNLNHFHCKRVGFSSSITCCHLESSLPS 60
           M+AC LTS S +   ELVP  KAR+ +  KRN     F  ++V    S+ C   +S  P 
Sbjct: 1   MDACFLTSRSISGVKELVPFIKARIFTCPKRNSG--QFITRKVASPISVNCSLSDSWKPL 58

Query: 61  DDH--------HKPLIDADWRSFRARLVAAEQAIRPQVQEPS-VDPDAAVNYPPQSS--- 108
           DD         +    DADWR FRARLV  EQA   +  +PS  +PD  V+Y P SS   
Sbjct: 59  DDDSDLFKDCVNNSTADADWREFRARLVVGEQAATSEKDQPSWSNPDMVVDYQPSSSSLI 118

Query: 109 -LGDKWAHTIHEPEKGCLLIATEKLDGVHIFERTVILLLSMEPMGPSGIILNRPSLMSIK 167
            +G +WAH IHEPE GCLLIATEKLDGVHIFE+TVILLLS+ P GP G+ILNRPSLMSIK
Sbjct: 119 TIGSRWAHKIHEPETGCLLIATEKLDGVHIFEKTVILLLSVGPSGPIGVILNRPSLMSIK 178

Query: 168 EMRSTVLDAAGTFSDRPLFFGGPLEEGLFLVSPK-GGGDEVGKSGVFEQVMEGLYFGTKE 226
           E +ST+LD AGTFSD+ LFFGGPLEEGLFLVSP+ GGG+EVGKSG+F QVM+GLY+GT+E
Sbjct: 179 ETKSTILDMAGTFSDKRLFFGGPLEEGLFLVSPRCGGGNEVGKSGLFRQVMKGLYYGTRE 238

Query: 227 TVGCAAEMVKRNAVGPEDFRFFDGCCGWEKEQLNEEIRAGYWTVAACSPSVIGLESG--T 284
           +VG AAEMVKRN VG  +FRFFDG CGWEKEQL  EI  GYWTVAACS SV+ L S   +
Sbjct: 239 SVGLAAEMVKRNLVGRSEFRFFDGYCGWEKEQLKAEILGGYWTVAACSSSVVELGSAVQS 298

Query: 285 LGLWEELLWLMG 296
            GLW+E+L L+G
Sbjct: 299 HGLWDEVLGLIG 310

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|18406113|ref|NP_566847.1| uncharacterized protein [Arabidopsis thaliana] gi|30689543|ref|NP_850648.1| uncharacterized protein [Arabidopsis thaliana] gi|9293917|dbj|BAB01820.1| unnamed protein product [Arabidopsis thaliana] gi|19310484|gb|AAL84976.1| AT3g29240/MXO21_9 [Arabidopsis thaliana] gi|21537141|gb|AAM61482.1| unknown [Arabidopsis thaliana] gi|22654969|gb|AAM98077.1| AT3g29240/MXO21_9 [Arabidopsis thaliana] gi|28416521|gb|AAO42791.1| AT3g29240/MXO21_9 [Arabidopsis thaliana] gi|332644033|gb|AEE77554.1| uncharacterized protein [Arabidopsis thaliana] gi|332644034|gb|AEE77555.1| uncharacterized protein [Arabidopsis thaliana]

 Score =  357 bits (916), Expect = 4e-96,   Method: Compositional matrix adjust.
 Identities = 190/312 (60%), Positives = 223/312 (71%), Gaps = 18/312 (5%)

Query: 1   MEACCLTSNSFNKTTELVPVSKARVVSYTKRNHNLNHFHCKRVGFSSSITCCHLESSLPS 60
           M+AC LTS S +   ELVP  KAR+ +  KRN     F  ++V    S+ C   +S  P 
Sbjct: 1   MDACFLTSRSISGVKELVPFIKARIFTCPKRNSG--QFVTRKVASPISVNCSLSDSWKPL 58

Query: 61  DDH--------HKPLIDADWRSFRARLVAAEQAIRPQVQEPS-VDPDAAVNYPPQSS--- 108
           +D         +    DADWR FRARLVA EQA   +  +PS  +PD  V+Y P SS   
Sbjct: 59  EDDADLFKDCVNNSTSDADWREFRARLVAGEQAATSEKDQPSWSNPDMVVDYQPSSSSLI 118

Query: 109 -LGDKWAHTIHEPEKGCLLIATEKLDGVHIFERTVILLLSMEPMGPSGIILNRPSLMSIK 167
            +G KWAH IHEPE GCLLIATEKLDGVHIFE+TVILLLS+ P GP G+ILNRPSLMSIK
Sbjct: 119 TIGSKWAHKIHEPETGCLLIATEKLDGVHIFEKTVILLLSVGPSGPIGVILNRPSLMSIK 178

Query: 168 EMRSTVLDAAGTFSDRPLFFGGPLEEGLFLVSPKGGGD-EVGKSGVFEQVMEGLYFGTKE 226
           E +ST+LD AGTFSD+ LFFGGPLEEGLFLVSP+ GGD EVGKSGVF QVM+GLY+GT+E
Sbjct: 179 ETKSTILDMAGTFSDKRLFFGGPLEEGLFLVSPRSGGDNEVGKSGVFRQVMKGLYYGTRE 238

Query: 227 TVGCAAEMVKRNAVGPEDFRFFDGCCGWEKEQLNEEIRAGYWTVAACSPSVIGLESG--T 284
           +VG AAEMVKRN VG  + RFFDG CGWEKEQL  EI  GYWTVAACS +V+ L S   +
Sbjct: 239 SVGLAAEMVKRNLVGRSELRFFDGYCGWEKEQLKAEILGGYWTVAACSSTVVELGSAVQS 298

Query: 285 LGLWEELLWLMG 296
            GLW+E+L L+G
Sbjct: 299 HGLWDEVLGLIG 310

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	301
TAIR|locus:2094817	317	AT3G29240 "AT3G29240" [Arabido	0.916	0.870	0.623	5.3e-88
TAIR|locus:2012628	325	AT1G33780 [Arabidopsis thalian	0.651	0.603	0.451	4e-42
TAIR|locus:2092241	1059	AT3G19780 [Arabidopsis thalian	0.475	0.135	0.304	6.9e-08
UNIPROTKB|Q605E8	188	MCA2336 "UPF0301 protein MCA23	0.471	0.755	0.337	8.6e-08
UNIPROTKB|Q5LX84	184	SPO0296 "UPF0301 protein SPO02	0.485	0.793	0.3	1.5e-06
TIGR_CMR|SPO_0296	184	SPO_0296 "conserved hypothetic	0.485	0.793	0.3	1.5e-06
UNIPROTKB|Q60BQ2	182	MCA0413 "UPF0301 protein MCA04	0.495	0.818	0.303	1.3e-05
UNIPROTKB|P67757	202	MT0043 "UPF0301 protein Rv0038	0.534	0.797	0.274	0.00015
UNIPROTKB|Q83A18	194	CBU_2093 "UPF0301 protein CBU_	0.455	0.706	0.262	0.00039
TIGR_CMR|CBU_2093	194	CBU_2093 "conserved hypothetic	0.455	0.706	0.262	0.00039

TAIR|locus:2094817 AT3G29240 "AT3G29240" [Arabidopsis thaliana (taxid:3702)]

 Score = 879 (314.5 bits), Expect = 5.3e-88, P = 5.3e-88
 Identities = 182/292 (62%), Positives = 211/292 (72%)

Query:     1 MEACCLTSNSFNKTTELVPVSKARVVSYTKRNHNLNHFHCKRVGFSSSITCCHLESSLPS 60
             M+AC LTS S +   ELVP  KAR+ +  KRN     F  ++V    S+ C   +S  P 
Sbjct:     1 MDACFLTSRSISGVKELVPFIKARIFTCPKRNSG--QFVTRKVASPISVNCSLSDSWKPL 58

Query:    61 DDH---HKPLI-----DADWRSFRARLVAAEQAIRPQVQEPS-VDPDAAVNYPPQSS--- 108
             +D     K  +     DADWR FRARLVA EQA   +  +PS  +PD  V+Y P SS   
Sbjct:    59 EDDADLFKDCVNNSTSDADWREFRARLVAGEQAATSEKDQPSWSNPDMVVDYQPSSSSLI 118

Query:   109 -LGDKWAHTIHEPEKGCLLIATEKLDGVHIFERTVILLLSMEPMGPSGIILNRPSLMSIK 167
              +G KWAH IHEPE GCLLIATEKLDGVHIFE+TVILLLS+ P GP G+ILNRPSLMSIK
Sbjct:   119 TIGSKWAHKIHEPETGCLLIATEKLDGVHIFEKTVILLLSVGPSGPIGVILNRPSLMSIK 178

Query:   168 EMRSTVLDAAGTFSDRPLFFGGPLEEGLFLVSPKGGGD-EVGKSGVFEQVMEGLYFGTKE 226
             E +ST+LD AGTFSD+ LFFGGPLEEGLFLVSP+ GGD EVGKSGVF QVM+GLY+GT+E
Sbjct:   179 ETKSTILDMAGTFSDKRLFFGGPLEEGLFLVSPRSGGDNEVGKSGVFRQVMKGLYYGTRE 238

Query:   227 TVGCAAEMVKRNAVGPEDFRFFDGCCGWEKEQLNEEIRAGYWTVAACSPSVI 278
             +VG AAEMVKRN VG  + RFFDG CGWEKEQL  EI  GYWTVAACS +V+
Sbjct:   239 SVGLAAEMVKRNLVGRSELRFFDGYCGWEKEQLKAEILGGYWTVAACSSTVV 290

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

GO:0009543 "chloroplast thylakoid lumen" evidence=ISS

GO:0009507 "chloroplast" evidence=IDA

TAIR|locus:2012628 AT1G33780 [Arabidopsis thaliana (taxid:3702)]

 Score = 446 (162.1 bits), Expect = 4.0e-42, P = 4.0e-42
 Identities = 97/215 (45%), Positives = 132/215 (61%)

Query:    68 IDADWRSFRARLVAAEQAIRPQVQEPSVDPDAAVNYPPQSSLGDKWAHTIHEPEKGCLLI 127
             ++ DWR FRA L   EQ  + + +    +P           +G KWAH I  PE GC+L+
Sbjct:    95 LNTDWREFRANLFMKEQEEKAEAEGHESEP-----------IGLKWAHPIPFPETGCVLV 143

Query:   128 ATEKLDGVHIFERTVILLL---SMEPM-GPSGIILNRPSLMSIKEMRSTVLDAAGTFSDR 183
             ATEKLDG   F RTV+LLL   +  P  GP G+++NRP   +IK M+ST  + A TFS+ 
Sbjct:   144 ATEKLDGYRTFARTVVLLLRAGTRHPQEGPFGVVINRPLHKNIKHMKSTKTELATTFSEC 203

Query:   184 PLFFGGPLEEGLFLVSPKGGGDEVGKSGVFEQVMEGLYFGTKETVGCAAEMVKRNAVGPE 243
              L+FGGPLE  +FL+     GD+    G FE+VM GL FGT+ ++  AA +VK+  + P+
Sbjct:   204 SLYFGGPLEASMFLLKT---GDKTKIPG-FEEVMPGLNFGTRNSLDEAAVLVKKGVLKPQ 259

Query:   244 DFRFFDGCCGWEKEQLNEEIRAGYWTVAACSPSVI 278
             +FRFF G  GW+ +QL EEI + YW VAACS  +I
Sbjct:   260 EFRFFVGYAGWQLDQLREEIESDYWHVAACSSDLI 294

GO:0009507 "chloroplast" evidence=ISM;IDA

GO:0009543 "chloroplast thylakoid lumen" evidence=ISS

GO:0019243 "methylglyoxal catabolic process to D-lactate" evidence=RCA

TAIR|locus:2092241 AT3G19780 [Arabidopsis thaliana (taxid:3702)]

 Score = 154 (59.3 bits), Expect = 6.9e-08, P = 6.9e-08
 Identities = 46/151 (30%), Positives = 74/151 (49%)

Query:   123 GCLLIATEKLDGVHIFERTVILLLSMEP-MGPSGIILN-RPSLMSIKEMRSTVLDAAGTF 180
             G +L+ATEKL     F ++ IL++   P +G  G+I N R    S  ++  T    A   
Sbjct:   904 GTVLVATEKLAASLTFAKSKILIIKAGPEIGFLGLIFNKRIRWKSFPDLGET----AELL 959

Query:   181 SDRPLFFGGPL-EEGLFLVSPKGGGDEVGKSGVFEQVMEGLYFGTKETVGCAAEMVKRNA 239
              + PL FGGP+ + G+ L++     D    +    ++  G+YF   ++V    + +K   
Sbjct:   960 KETPLSFGGPVVDPGIPLLALTRERDS-STNHDHPEISPGVYFLDHQSVARRIQELKSRE 1018

Query:   240 VGPEDFRFFDGCCGWEKEQLNEEIRAGYWTV 270
             + P ++ FF G   W  EQL +EI  G W V
Sbjct:  1019 LNPSEYWFFLGYSSWSYEQLFDEIGLGVWDV 1049

GO:0009507 "chloroplast" evidence=ISM

UNIPROTKB|Q605E8 MCA2336 "UPF0301 protein MCA2336 2" [Methylococcus capsulatus str. Bath (taxid:243233)]

 Score = 134 (52.2 bits), Expect = 8.6e-08, P = 8.6e-08
 Identities = 53/157 (33%), Positives = 66/157 (42%)

Query:   126 LIATEKLDGVHIFERTVILLLSMEPMGPSGIILNRPSLMSIKE-MRSTVLDA-AGTFSDR 183
             LIA   L   H F +TV L+      G  GII+NRPS + + + MR   +D       D 
Sbjct:    13 LIAMPGLTDPH-FAKTVTLVCQHNADGALGIIINRPSELKLSDIMRQMEIDLKVAELGDL 71

Query:   184 PLFFGGPL--EEGLFLVSPKGGGDEVGKSGVFEQVMEGLYFGTKETVGCAAEMVKRNAVG 241
             P+FFGGP+  E G  L  P      V  S +   V E L   T   +    E V R   G
Sbjct:    72 PVFFGGPVHPERGFILHEPA----TVWASTLV--VSERLALTTSRDI---LEAVGRGE-G 121

Query:   242 PEDFRFFDGCCGWEKEQLNEEIRAGYWTVAACSPSVI 278
             P       G  GW + QL  EI    W  A    +VI
Sbjct:   122 PRRMLLALGYAGWGQGQLEREIIDNSWLNAPSDNAVI 158

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

UNIPROTKB|Q5LX84 SPO0296 "UPF0301 protein SPO0296" [Ruegeria pomeroyi DSS-3 (taxid:246200)]

 Score = 126 (49.4 bits), Expect = 1.5e-06, P = 1.5e-06
 Identities = 48/160 (30%), Positives = 73/160 (45%)

Query:   123 GCLLIATEKLDGVHIFERTVILLLSMEPMGPSGIILNRPSLMSIKEMRSTV-LDAAGTFS 181
             G LLIA   + G   FER+VI L S    G  G+I+N+P+ +++  +   + + ++   +
Sbjct:     5 GKLLIAMPGM-GDPRFERSVIFLCSHGEDGAMGLIVNKPADLNVSTLLEQLEIPSSSAAA 63

Query:   182 DR-PLFFGGPLE--EGLFLVSPKGGGDEVGKSGVFEQVMEGLYFGTKETVGCAAEMVKRN 238
              R P+  GGP+E   G  L SP    D  GK    + V +G  F    T+    ++ + N
Sbjct:    64 ARAPVRLGGPVEMARGFVLHSP----DYAGKLQSLK-VSDG--FVMTATLDILEDIARDN 116

Query:   239 AVGPEDFRFFDGCCGWEKEQLNEEIRAGYWTVAACSPSVI 278
               GP       G  GW   QL  EI    W  A   P ++
Sbjct:   117 --GPARAALMLGYSGWGPGQLEAEIGDNGWLTADADPDIV 154

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

TIGR_CMR|SPO_0296 SPO_0296 "conserved hypothetical protein" [Ruegeria pomeroyi DSS-3 (taxid:246200)]

 Score = 126 (49.4 bits), Expect = 1.5e-06, P = 1.5e-06
 Identities = 48/160 (30%), Positives = 73/160 (45%)

Query:   123 GCLLIATEKLDGVHIFERTVILLLSMEPMGPSGIILNRPSLMSIKEMRSTV-LDAAGTFS 181
             G LLIA   + G   FER+VI L S    G  G+I+N+P+ +++  +   + + ++   +
Sbjct:     5 GKLLIAMPGM-GDPRFERSVIFLCSHGEDGAMGLIVNKPADLNVSTLLEQLEIPSSSAAA 63

Query:   182 DR-PLFFGGPLE--EGLFLVSPKGGGDEVGKSGVFEQVMEGLYFGTKETVGCAAEMVKRN 238
              R P+  GGP+E   G  L SP    D  GK    + V +G  F    T+    ++ + N
Sbjct:    64 ARAPVRLGGPVEMARGFVLHSP----DYAGKLQSLK-VSDG--FVMTATLDILEDIARDN 116

Query:   239 AVGPEDFRFFDGCCGWEKEQLNEEIRAGYWTVAACSPSVI 278
               GP       G  GW   QL  EI    W  A   P ++
Sbjct:   117 --GPARAALMLGYSGWGPGQLEAEIGDNGWLTADADPDIV 154

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

UNIPROTKB|Q60BQ2 MCA0413 "UPF0301 protein MCA0413 1" [Methylococcus capsulatus str. Bath (taxid:243233)]

 Score = 119 (46.9 bits), Expect = 1.3e-05, P = 1.3e-05
 Identities = 50/165 (30%), Positives = 70/165 (42%)

Query:   118 HEPEKGCLLIATEKLDGVHIFERTVILLLSMEPMGPSGIILNRPSLMSIKEMRSTVLDAA 177
             H    G  L+A  K+   +IF  +VI ++S    G  G+I+NR  L     +   +L+A 
Sbjct:    10 HADTSGQFLVAHPKMPA-NIFAHSVIYVVSHNADGAMGLIVNR--LAGAGPL-GKLLEAF 65

Query:   178 GTFS----DRPLFFGGPLEEGLFLVSPKGGGDEVGKSGVFEQVMEGLYFGTKETVGCAAE 233
             G  S    +  L+ GGP+  G   V      D  G S     + +GL   T   V    E
Sbjct:    66 GLASKAQREIKLYLGGPVGIGQGFVLHSD--DYAGAST--RALKKGLSLSTGLDV---LE 118

Query:   234 MVKRNAVGPEDFRFFDGCCGWEKEQLNEEIRAGYWTVAACSPSVI 278
              + R   GP   R   G  GW   QL+ EI  G W +A    S+I
Sbjct:   119 AIARGR-GPRQVRMLFGYAGWSPGQLDGEIARGDWLLAPADTSLI 162

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

UNIPROTKB|P67757 MT0043 "UPF0301 protein Rv0038/MT0043" [Mycobacterium tuberculosis (taxid:1773)]

 Score = 113 (44.8 bits), Expect = 0.00015, P = 0.00015
 Identities = 48/175 (27%), Positives = 70/175 (40%)

Query:   105 PQSSLGDKWAHTIHEPEKGCLLIA-TEKLDGVHIFERTVILLLSMEPMGPSGIILNRPSL 163
             P     D  A        G LL+A T+ L+    F R+VI ++     G  G++LNRPS 
Sbjct:     4 PHEDPEDHVAPAAQRVRAGTLLLANTDLLEPT--FRRSVIYIVEHNDGGTLGVVLNRPSE 61

Query:   164 MSIKEMRSTVLDAAGTFSDRPLFFGGPLEE--GLFLVSPKGGGDEVGKSGVFEQVMEGLY 221
              ++  +       A     + +F GGP++    L L   + G D  G  G+   V   L 
Sbjct:    62 TAVYNVLPQWAKLAA--KPKTMFIGGPVKRDAALCLAVLRVGADPEGVPGL-RHVAGRLV 118

Query:   222 FGTKETVGCAAEMVKRNAVGPEDFRFFDGCCGWEKEQLNEEIRAGYWTVAACSPS 276
                   +    E++   A   E  R + G  GW   QL  EI    W V +  PS
Sbjct:   119 M---VDLDADPEVL---AAAVEGVRIYAGYSGWTIGQLEGEIERDDWIVLSALPS 167

GO:0005886 "plasma membrane" evidence=IDA

UNIPROTKB|Q83A18 CBU_2093 "UPF0301 protein CBU_2093" [Coxiella burnetii RSA 493 (taxid:227377)]

 Score = 109 (43.4 bits), Expect = 0.00039, P = 0.00039
 Identities = 41/156 (26%), Positives = 72/156 (46%)

Query:   126 LIATEKLDGVHIFERTVILLLSMEPMGPSGIILNRPSLMSI-KEMRSTVLDAAGT-FSDR 183
             L+A  +L+    F + VI +   +  G  GII+NRP  +++ K +    ++ A    ++ 
Sbjct:    25 LVAMPQLNDF-TFTKAVIYVSQHDAKGALGIIINRPLALTLGKVLEHLNIEIAQPQIANH 83

Query:   184 PLFFGGPL-EEGLFLVSPKGGGDEVGKSGVFEQVMEGLYFGTKETVGCAAEMVKRNAVGP 242
             P+  GGP+ +E  F+V      ++    G      E L   +K+ +    + + +N  GP
Sbjct:    84 PVLMGGPIGQEHGFIVY-----EQESPQGA-----EILLSASKDML----DDIAKNK-GP 128

Query:   243 EDFRFFDGCCGWEKEQLNEEIRAGYWTVAACSPSVI 278
             +DF    G  GWE  QL  EI    W V   +  ++
Sbjct:   129 DDFLITLGYAGWEAGQLENEIARNDWLVVPFNRKIL 164

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

TIGR_CMR|CBU_2093 CBU_2093 "conserved hypothetical protein" [Coxiella burnetii RSA 493 (taxid:227377)]

 Score = 109 (43.4 bits), Expect = 0.00039, P = 0.00039
 Identities = 41/156 (26%), Positives = 72/156 (46%)

Query:   126 LIATEKLDGVHIFERTVILLLSMEPMGPSGIILNRPSLMSI-KEMRSTVLDAAGT-FSDR 183
             L+A  +L+    F + VI +   +  G  GII+NRP  +++ K +    ++ A    ++ 
Sbjct:    25 LVAMPQLNDF-TFTKAVIYVSQHDAKGALGIIINRPLALTLGKVLEHLNIEIAQPQIANH 83

Query:   184 PLFFGGPL-EEGLFLVSPKGGGDEVGKSGVFEQVMEGLYFGTKETVGCAAEMVKRNAVGP 242
             P+  GGP+ +E  F+V      ++    G      E L   +K+ +    + + +N  GP
Sbjct:    84 PVLMGGPIGQEHGFIVY-----EQESPQGA-----EILLSASKDML----DDIAKNK-GP 128

Query:   243 EDFRFFDGCCGWEKEQLNEEIRAGYWTVAACSPSVI 278
             +DF    G  GWE  QL  EI    W V   +  ++
Sbjct:   129 DDFLITLGYAGWEAGQLENEIARNDWLVVPFNRKIL 164


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.320   0.135   0.424    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      301       285   0.00085  115 3  11 22  0.37    34
                                                     33  0.42    37


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  10
  No. of states in DFA:  617 (66 KB)
  Total size of DFA:  224 KB (2123 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  22.20u 0.09s 22.29t   Elapsed:  00:00:01
  Total cpu time:  22.20u 0.09s 22.29t   Elapsed:  00:00:01
  Start:  Sat May 11 09:08:29 2013   End:  Sat May 11 09:08:30 2013

GO:0008150 "biological_process" evidence=ND

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	301
pfam02622	158	pfam02622, DUF179, Uncharacterized ACR, COG1678	2e-33
PRK00228	191	PRK00228, PRK00228, hypothetical protein; Validate	2e-23
COG1678	194	COG1678, COG1678, Putative transcriptional regulat	2e-17

>gnl|CDD|217150 pfam02622, DUF179, Uncharacterized ACR, COG1678

 Score =  119 bits (301), Expect = 2e-33
 Identities = 55/163 (33%), Positives = 78/163 (47%), Gaps = 13/163 (7%)

Query: 136 HIFERTVILLLSMEPMGPSGIILNRPSLMSIKEMRSTVLDAAGTFSDRPLFFGGPLEE-- 193
             F R+V+LL      G  G+ILNRP  +++ ++   +    G FSD+P++FGGP+E   
Sbjct: 7   PNFARSVVLLCEHNEEGAMGLILNRPLDLTLADLLEQLDIEPGAFSDQPVYFGGPVEPDR 66

Query: 194 GLFLVSPKGGGDEVGKSGVFEQVMEGLYFGTKETVGCAAEMVKRNAVGPEDFRFFDGCCG 253
           G  L SP    D+   S +  +V +GLY  T   +  A         GPED   F G  G
Sbjct: 67  GFVLHSP----DDGEPSSL--EVSDGLYLTTSLDILEAI----ARGEGPEDILVFLGYAG 116

Query: 254 WEKEQLNEEIRAGYWTVAACSPSVIGLESGTLGLWEELLWLMG 296
           W   QL +EI    W VA   P +I  ++     WE  L  +G
Sbjct: 117 WGAGQLEQEIAENSWLVAPADPEII-FDTPPEDRWEAALRRLG 158

Length = 158

>gnl|CDD|234694 PRK00228, PRK00228, hypothetical protein; Validated

 Score = 94.2 bits (235), Expect = 2e-23
 Identities = 51/193 (26%), Positives = 76/193 (39%), Gaps = 27/193 (13%)

Query: 114 AHTIHEPEKGCLLIATEKL-DGVHIFERTVILLLSMEPMGPSGIILNRPSLMSIKEM--R 170
                   +G LLIA   L D    F R+VI +      G  G+++NRPS + + E+  +
Sbjct: 3   KPPEPMNLQGQLLIAMPDLQDP--NFARSVIYICEHNENGAMGLVINRPSELDVAEVLPQ 60

Query: 171 STVLDAA-GTFSDRPLFFGGPLEE--GLFLVSPKGGGDEVGKSGVFEQVMEGLYFGTK-- 225
             +L        D+P+F GGP++   G  L SP+ G           +V +GL   T   
Sbjct: 61  LDILATPPEIRLDQPVFLGGPVQTDRGFVLHSPRDG------FDSSIRVSDGLVLTTSRD 114

Query: 226 --ETVGCAAEMVKRNAVGPEDFRFFDGCCGWEKEQLNEEIRAGYWTVAACSPSVIGLESG 283
             E +            GPE      G  GW   QL +EI    W  A   P ++  ++ 
Sbjct: 115 VLEALATGP--------GPEGVLVALGYAGWGAGQLEQEIEENAWLTAPADPEIL-FDTP 165

Query: 284 TLGLWEELLWLMG 296
               W   L  +G
Sbjct: 166 PEDRWRAALRRLG 178

Length = 191

>gnl|CDD|224592 COG1678, COG1678, Putative transcriptional regulator [Transcription]

 Score = 78.5 bits (194), Expect = 2e-17
 Identities = 46/183 (25%), Positives = 75/183 (40%), Gaps = 23/183 (12%)

Query: 122 KGCLLIATEKLDGVHIFERTVILLLSMEPMGPSGIILNRPS-LMSIKEMRSTV-LDAAGT 179
           +G  L+A   +    IF R+V+ +      G  G+I+NRPS  +++ E+   + L+    
Sbjct: 14  QGHFLVAMPDMQD-PIFARSVVYICEHNENGAMGLIINRPSETLTLAELLEKLKLEIKIL 72

Query: 180 FSDRPLFFGGPLEE--GLFLVSPKGGGDEVGKSGVFEQVMEGLYFGTK----ETVGCAAE 233
              +P++ GGP++   G  L S   G  +   S +  +V +GL   T     E +     
Sbjct: 73  RLPKPVYLGGPVQRDRGFVLHSSDYGAFQ---SSL--RVSDGLALTTSLDVLEAIAAGK- 126

Query: 234 MVKRNAVGPEDFRFFDGCCGWEKEQLNEEIRAGYWTVAACSPSVIGLESGTLGLWEELLW 293
                  GPE      G  GW   QL EEI    W      P ++  ++     W   L 
Sbjct: 127 -------GPEKALVALGYAGWAAGQLEEEIEDNDWLTVPADPEIL-FDTPPEDRWARALR 178

Query: 294 LMG 296
            +G
Sbjct: 179 RLG 181

Length = 194

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	301
PRK00228	191	hypothetical protein; Validated	100.0
COG1678	194	Putative transcriptional regulator [Transcription]	100.0
PF02622	161	DUF179: Uncharacterized ACR, COG1678; InterPro: IP	100.0

>PRK00228 hypothetical protein; Validated

Probab=100.00  E-value=6.6e-49  Score=350.70  Aligned_cols=170  Identities=30%  Similarity=0.503  Sum_probs=145.6

Q ss_pred             cCCCCCCcEEEecCCCCCCCCcCceEEEEEEeCCCCcEEEEecCCCCccHHHHHHhhhccc---CCCCCCCeEecCCccC
Q 022178          117 IHEPEKGCLLIATEKLDGVHIFERTVILLLSMEPMGPSGIILNRPSLMSIKEMRSTVLDAA---GTFSDRPLFFGGPLEE  193 (301)
Q Consensus       117 ~~~pe~G~LLIAtP~L~d~~~F~RSVILLleH~e~Ga~GLILNRP~~~~l~~l~~~~~dl~---~~~~~~pvy~GGPV~~  193 (301)
                      ...+++|+||||+|.|.|+ +|+|||||||+|+++||+|||||||++++++++++++....   ..+.+.|||+||||++
T Consensus         6 ~~~~~~G~lLiA~P~l~d~-~F~rSVIll~eH~~~Ga~GlIlNrp~~~~l~~ll~~~~~~~~~~~~~~~~~v~~GGPV~~   84 (191)
T PRK00228          6 EPMNLQGQLLIAMPDLQDP-NFARSVIYICEHNENGAMGLVINRPSELDVAEVLPQLDILATPPEIRLDQPVFLGGPVQT   84 (191)
T ss_pred             cCccCCCeEEEeCCCCCCC-CcCccEEEEEEeCCCCceEEEEcCCCCCCHHHHHHHhcccccCcccccCCeEEeCCCccC
Confidence            4678999999999999975 99999999999999999999999999999999998873211   2345689999999996


Q ss_pred             --CeEEEccCCCCCccCCCcceeeeecceeeccchhhhhhHHHHHhccCCCCceEEEeeccCCChhHHHHHHHcCCeEEc
Q 022178          194 --GLFLVSPKGGGDEVGKSGVFEQVMEGLYFGTKETVGCAAEMVKRNAVGPEDFRFFDGCCGWEKEQLNEEIRAGYWTVA  271 (301)
Q Consensus       194 --~~~L~~~~~~~~~~~~~~~~~eV~~Gly~g~~~~v~~a~elv~~g~~~~~dfrfF~GYsGW~pGQLE~EI~~G~W~va  271 (301)
                        +++||......   .   .+.+|.+|||++++.++   .+.+..+ .++++||||+|||||++||||+||++|+|+++
T Consensus        85 ~~~~~Lh~~~~~~---~---~s~~v~~gl~l~~s~d~---l~~l~~~-~~~~~~~~flGyaGW~~gQLe~Ei~~g~W~v~  154 (191)
T PRK00228         85 DRGFVLHSPRDGF---D---SSIRVSDGLVLTTSRDV---LEALATG-PGPEGVLVALGYAGWGAGQLEQEIEENAWLTA  154 (191)
T ss_pred             CcEEEEEECCCcC---C---CceeecCCeEEeCCHHH---HHHHhcC-CCCCcEEEEEEECCCCHHHHHHHHHcCCeEEc
Confidence              46777553211   1   24799999999998774   4555554 46799999999999999999999999999999


Q ss_pred             cCCCCeeecCCCchhHHHHHHHhcCCC
Q 022178          272 ACSPSVIGLESGTLGLWEELLWLMGRR  298 (301)
Q Consensus       272 ~as~~li~f~~~~~~lW~e~L~~~Gg~  298 (301)
                      +|++++| |+++++++|+++|++||++
T Consensus       155 ~a~~~~l-f~~~~~~~W~~~l~~~G~~  180 (191)
T PRK00228        155 PADPEIL-FDTPPEDRWRAALRRLGID  180 (191)
T ss_pred             cCCHHHh-cCCCHHHHHHHHHHHhCCC
Confidence            9999999 9999999999999999997

>COG1678 Putative transcriptional regulator [Transcription]

Probab=100.00  E-value=2.9e-45  Score=325.43  Aligned_cols=170  Identities=26%  Similarity=0.482  Sum_probs=146.3

Q ss_pred             cCCCCCCcEEEecCCCCCCCCcCceEEEEEEeCCCCcEEEEecCCCC-ccHHHHHHhhhcccCC--CCCCCeEecCCccC
Q 022178          117 IHEPEKGCLLIATEKLDGVHIFERTVILLLSMEPMGPSGIILNRPSL-MSIKEMRSTVLDAAGT--FSDRPLFFGGPLEE  193 (301)
Q Consensus       117 ~~~pe~G~LLIAtP~L~d~~~F~RSVILLleH~e~Ga~GLILNRP~~-~~l~~l~~~~~dl~~~--~~~~pvy~GGPV~~  193 (301)
                      ....++|+||||+|.|.|+ +|+|||||||+|+++||||||||||++ .++.++++.. ++...  ..+.+||.||||+.
T Consensus         9 ~~~~l~g~fLiAmP~m~d~-~F~RSVvyiceH~e~GamGliiNrp~~~~~~~~l~~~~-~~~~~~~~~~~~v~~GGPv~~   86 (194)
T COG1678           9 AQMNLQGHFLVAMPDMQDP-IFARSVVYICEHNENGAMGLIINRPSETLTLAELLEKL-KLEIKILRLPKPVYLGGPVQR   86 (194)
T ss_pred             hhcccCCcEEEecCCCCCC-ccceeEEEEEEeCCCCcEEEEecCCccccCHHHHHHHh-cccccccccCceEEeCCcccc
Confidence            3567899999999999975 999999999999999999999999999 9999998764 32221  34789999999996


Q ss_pred             --CeEEEccCCCCCccCCCcceeeeecceeeccchhhhhhHHHHHhccCCCCceEEEeeccCCChhHHHHHHHcCCeEEc
Q 022178          194 --GLFLVSPKGGGDEVGKSGVFEQVMEGLYFGTKETVGCAAEMVKRNAVGPEDFRFFDGCCGWEKEQLNEEIRAGYWTVA  271 (301)
Q Consensus       194 --~~~L~~~~~~~~~~~~~~~~~eV~~Gly~g~~~~v~~a~elv~~g~~~~~dfrfF~GYsGW~pGQLE~EI~~G~W~va  271 (301)
                        +|+||.......    . .+.+|.++++++++.++   .+.+..+ .+++++++++|||||++||||+||++|.|+++
T Consensus        87 ~rgfvLh~~~~~~~----~-ssl~v~~~~~lt~s~Dv---l~~i~~~-~~p~~~l~~lGYagW~~GQLE~Ei~~n~WL~~  157 (194)
T COG1678          87 DRGFVLHSSDYGAF----Q-SSLRVSDGLALTTSLDV---LEAIAAG-KGPEKALVALGYAGWAAGQLEEEIEDNDWLTV  157 (194)
T ss_pred             cceEEEEeCCCCCC----c-ccceecCCEEEEecHhH---HHHHhcc-CCCCceEEEEEecccccchhHHHHhhCCEEEe
Confidence              688887444221    1 14789999999999884   5666665 57999999999999999999999999999999


Q ss_pred             cCCCCeeecCCCchhHHHHHHHhcCCC
Q 022178          272 ACSPSVIGLESGTLGLWEELLWLMGRR  298 (301)
Q Consensus       272 ~as~~li~f~~~~~~lW~e~L~~~Gg~  298 (301)
                      +|++++| |+.+++++|.++|+++|..
T Consensus       158 pA~~~~l-F~~~~edrw~~al~~lGi~  183 (194)
T COG1678         158 PADPEIL-FDTPPEDRWARALRRLGID  183 (194)
T ss_pred             cCCHHHh-cCCCHHHHHHHHHHHcCCC
Confidence            9999999 9999999999999999986

>PF02622 DUF179: Uncharacterized ACR, COG1678; InterPro: IPR003774 This entry describes proteins of unknown function

Probab=100.00  E-value=7.7e-45  Score=315.41  Aligned_cols=158  Identities=36%  Similarity=0.666  Sum_probs=131.8

Q ss_pred             cCCCCCCCCcCceEEEEEEeCCCCcEEEEecCCCCccHHHHHHhhhccc-CCCCCCCeEecCCccCC--eEEEccCCCCC
Q 022178          129 TEKLDGVHIFERTVILLLSMEPMGPSGIILNRPSLMSIKEMRSTVLDAA-GTFSDRPLFFGGPLEEG--LFLVSPKGGGD  205 (301)
Q Consensus       129 tP~L~d~~~F~RSVILLleH~e~Ga~GLILNRP~~~~l~~l~~~~~dl~-~~~~~~pvy~GGPV~~~--~~L~~~~~~~~  205 (301)
                      +|.|.|+ +|+|||||||+|+++||+|||||||++.+++++++.+.... .++.+.+||+||||+..  ++||.....  
T Consensus         1 ~P~l~d~-~F~~sVVli~~h~~~Ga~GlILNrp~~~~l~~~~~~~~~~~~~~~~~~~v~~GGPV~~~~~~~Lh~~~~~--   77 (161)
T PF02622_consen    1 MPSLNDP-NFHRSVVLICEHDEEGAMGLILNRPTNITLSELLEELELLPISAFSDQPVYFGGPVEPDRGFVLHSIPDL--   77 (161)
T ss_dssp             -TTSTST-TTTTEEEEEEEEETTEEEEEESSSEEEEEHHHHHHHTTCCSSTTCCCSEEEES-SEEEEEEEEEEEC-TT--
T ss_pred             CCCCCCC-CcCceEEEEEEECCCCcEEEEecCCCCCCHHHHHHhhccccccccccCeEEECCCcccCeEEEEEECCCC--
Confidence            6999976 99999999999999999999999999999999988764332 33678999999999973  556654321  


Q ss_pred             ccCCCcceeeeecceeeccchhhhhhHHHHHhccCCCCceEEEeeccCCChhHHHHHHHcCCeEEccCCCCeeecCCCch
Q 022178          206 EVGKSGVFEQVMEGLYFGTKETVGCAAEMVKRNAVGPEDFRFFDGCCGWEKEQLNEEIRAGYWTVAACSPSVIGLESGTL  285 (301)
Q Consensus       206 ~~~~~~~~~eV~~Gly~g~~~~v~~a~elv~~g~~~~~dfrfF~GYsGW~pGQLE~EI~~G~W~va~as~~li~f~~~~~  285 (301)
                       ..  ..+.+|.+|+|+|++.++  +.++|+++ ..+.+||||+|||||++||||+||++|+|++++|++++| |+.+++
T Consensus        78 -~~--~~s~~v~~gl~~~~~~~~--~~~~i~~~-~~~~~~~~f~GysgW~~gQLe~Ei~~g~W~~~~a~~~~v-f~~~~~  150 (161)
T PF02622_consen   78 -EG--PGSIEVSPGLYLGGSLDA--LEALIAEG-AGPEDFRFFLGYSGWGPGQLEDEIARGSWLVAPASPDIV-FETPPE  150 (161)
T ss_dssp             -GC--SSEEECSSSEEEEESTHH--HHHHHTST-TSCSSEEEEEEEEEECTTHHHHHHHTTTEEEEE--HHHH-CTSTSS
T ss_pred             -CC--CCceEEeCCeEEeccHHH--HHHHHhCC-CCCceEEEEEEECCCCHHHHHHHHHcCCEEEeeCCHHHh-hCCCHH
Confidence             01  135799999999998764  45568888 889999999999999999999999999999999999999 999999


Q ss_pred             hHHHHHHHhcC
Q 022178          286 GLWEELLWLMG  296 (301)
Q Consensus       286 ~lW~e~L~~~G  296 (301)
                      .+|+++|++||
T Consensus       151 ~~W~~~l~~~G  161 (161)
T PF02622_consen  151 ELWREALRRLG  161 (161)
T ss_dssp             HHHHHHHHCTT
T ss_pred             HHHHHHHHHCc
Confidence            99999999998

; PDB: 2DO8_A 2EW0_A 2GS5_A 2HRX_A 2AJ2_A 2HAF_A 2GZO_A.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	301
2do8_A	188	Solution Structure Of Upf0301 Protein Hd_1794 Lengt		4e-06
2ew0_A	192	X-Ray Crystal Structure Of Protein Q6ff54 From Acin		7e-06

>pdb|2DO8|A Chain A, Solution Structure Of Upf0301 Protein Hd_1794 Length = 188

Iteration: 1
 Score = 48.5 bits (114), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 38/164 (23%), Positives = 75/164 (45%), Gaps = 18/164 (10%)
Query: 122 KGCLLIATEKLDGVHIFERTVILLLSMEPMGPSGIILNRPSLMSIKEMRSTV---LDAAG 178
           +G  +IAT ++D  + F+RTVI +      G  G+I+N P+ +S+ E+ + +   +    
Sbjct: 6   QGKFIIATPEMDDEY-FDRTVIYICEHNDNGTIGVIINTPTDLSVLELLTRMDFQMAKPR 64
Query: 179 TFS-DRPLFFGGPLEEGL-FLVSPKGGGDEVGKSGVFEQVMEGLYFGTKETVGCAAEMVK 236
            ++ D+ +  GGP+ +   F+V  K   +      V + +          T+  + +++ 
Sbjct: 65  IYTQDQMVLNGGPVNQDRGFIVHSKTDHEFTHSYKVTDDI----------TLTTSGDVLD 114
Query: 237 R--NAVGPEDFRFFDGCCGWEKEQLNEEIRAGYWTVAACSPSVI 278
                  PE F    GC  W+  QL +EI   YW ++  +   +
Sbjct: 115 SFGTQTAPEKFIVCLGCSTWKPHQLEQEIAQNYWLLSEANNQTL 158

>pdb|2EW0|A Chain A, X-Ray Crystal Structure Of Protein Q6ff54 From Acinetobacter Sp. Adp1. Northeast Structural Genomics Consortium Target Asr1 Length = 192

Iteration: 1
 Score = 47.8 bits (112), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 45/157 (28%), Positives = 66/157 (42%), Gaps = 14/157 (8%)
Query: 124 CLLIATEKLDGVHIFERTVILLLSMEPMGPSGIILNRPSLMSIKEMRSTVLDAAGTFSDR 183
           CL+   E  D    F  TVI L   +  G  GII+NRP+ + IKE+ + +   A   +  
Sbjct: 10  CLIAPPEXADD--FFANTVIYLARHDEEGAQGIIINRPAGIQIKELLNDLDIDADNVNPH 67
Query: 184 PLFFGGPL--EEGLFLVSPKGGGDEVGKSGVFEQVMEGLYFGTKETVGCAAEMVKRNAVG 241
            +  GGPL  E G  L +    G     S +   V E +   T + +  A  +     VG
Sbjct: 68  EVLQGGPLRPEAGFVLHT----GQPTWHSSI--AVGENVCITTSKDILDA--IAHNEGVG 119
Query: 242 PEDFRFFDGCCGWEKEQLNEEIRAGYWTVAACSPSVI 278
              ++   G   W K QL +EI  G W +      +I
Sbjct: 120 R--YQIALGYASWGKNQLEDEIARGDWLICDADXDLI 154

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	301
2gs5_A	198	Conserved hypothetical protein; corvnebacterium di	3e-35
2do8_A	188	UPF0301 protein HD_1794; NESG, GFT structral genom	1e-30
2ew0_A	192	Hypothetical protein aciad0353; Q5FF54, ASR1, NESG	2e-29
2haf_A	211	Putative translation repressor; alpha/beta, X-RAY	7e-29
2gzo_A	195	UPF0301 protein SO3346; GFT-protein structure, nes	1e-25

>2gs5_A Conserved hypothetical protein; corvnebacterium diphtheria, structural genomics, PSI; 1.50A {Corynebacterium diphtheriae nctc 13129ORGANISM_TAXID} SCOP: d.310.1.1 PDB: 2hrx_A Length = 198

 Score =  125 bits (315), Expect = 3e-35
 Identities = 40/182 (21%), Positives = 72/182 (39%), Gaps = 11/182 (6%)

Query: 116 TIHEPEKGCLLIATEKLDGVHIFERTVILLLSMEPMGPSGIILNRPSLMSIKEMRSTVLD 175
             +EP  G +L+A   ++    F R+VIL++        G+ L   S +++  +    + 
Sbjct: 11  ERNEPAPGMVLVAAPSMES-EDFARSVILIIEHSEYATFGVNLASRSDVAVFNVIPEWVP 69

Query: 176 AAGTFSDRPLFFGGPLEEG-LFLVSPKGGGDEVGKSGVFEQVMEGLYFGTKETVGCAAEM 234
                  + L+ GGPL +  +  V     G +  +     ++   L       +G   E 
Sbjct: 70  CVT--KPQALYIGGPLNQQSVVGVGVTAQGVDAARVDNLTRLANRLVM---VNLGADPEE 124

Query: 235 VKRNAVGPEDFRFFDGCCGWEKEQLNEEIRAGYWTVAACSPSVIGLESGTLGLWEELLWL 294
           +K         R F G   W   QL +EI  G W VA   PS +    G++ +W +++  
Sbjct: 125 IKP---LVSGMRLFAGHAEWAPGQLAQEIENGDWFVAPALPSDV-TAPGSVDVWGDVMRR 180

Query: 295 MG 296
             
Sbjct: 181 QP 182

>2do8_A UPF0301 protein HD_1794; NESG, GFT structral genomics, HDR14, structural genomics, PSI, protein structure initiative; NMR {Haemophilus ducreyi} SCOP: d.310.1.1 Length = 188

 Score =  112 bits (283), Expect = 1e-30
 Identities = 43/180 (23%), Positives = 74/180 (41%), Gaps = 15/180 (8%)

Query: 122 KGCLLIATEKLDGVHIFERTVILLLSMEPMGPSGIILNRPSLMSIKE----MRSTVLDAA 177
           +G  +IAT ++D    F+RTVI +      G  G+I+N P+ +S+ E    M   +    
Sbjct: 6   QGKFIIATPEMDD-EYFDRTVIYICEHNDNGTIGVIINTPTDLSVLELLTRMDFQMAKPR 64

Query: 178 GTFSDRPLFFGGPLEEGLFLVSPKGGGDEVGKSGVFEQVMEGLYFGT-KETVGCAAEMVK 236
               D+ +  GGP+ +    +       E   S    +V + +   T  + +        
Sbjct: 65  IYTQDQMVLNGGPVNQDRGFIVHSKTDHEFTHS---YKVTDDITLTTSGDVLDSFGT--- 118

Query: 237 RNAVGPEDFRFFDGCCGWEKEQLNEEIRAGYWTVAACSPSVIGLESGTLGLWEELLWLMG 296
                PE F    GC  W+  QL +EI   YW ++  +   +  E+  L  W E   ++G
Sbjct: 119 --QTAPEKFIVCLGCSTWKPHQLEQEIAQNYWLLSEANNQTL-FETSYLDRWVEANEMLG 175

>2ew0_A Hypothetical protein aciad0353; Q5FF54, ASR1, NESG, structural genomics, PSI, protein struct initiative; 1.40A {Acinetobacter SP} SCOP: d.310.1.1 Length = 192

 Score =  109 bits (275), Expect = 2e-29
 Identities = 41/175 (23%), Positives = 62/175 (35%), Gaps = 10/175 (5%)

Query: 122 KGCLLIATEKLDGVHIFERTVILLLSMEPMGPSGIILNRPSLMSIKEMRSTVLDAAGTFS 181
               LIA  ++     F  TVI L   +  G  GII+NRP+ + IKE+ + +   A   +
Sbjct: 7   THRCLIAPPEMAD-DFFANTVIYLARHDEEGAQGIIINRPAGIQIKELLNDLDIDADNVN 65

Query: 182 DRPLFFGGPLEEGLFLVSPKGGGDEVGKSGVFEQVMEGLYFGTKETVGCAAEMVKRNAVG 241
              +  GGPL      V   G         V E V         + +         +  G
Sbjct: 66  PHEVLQGGPLRPEAGFVLHTGQPTWHSSIAVGENVCITTSKDILDAIA--------HNEG 117

Query: 242 PEDFRFFDGCCGWEKEQLNEEIRAGYWTVAACSPSVIGLESGTLGLWEELLWLMG 296
              ++   G   W K QL +EI  G W +      +I         W+     +G
Sbjct: 118 VGRYQIALGYASWGKNQLEDEIARGDWLICDADMDLI-FNLPYDDRWDAAYKKIG 171

>2haf_A Putative translation repressor; alpha/beta, X-RAY crystallography, structural genomics, PSI, protein structure initiative; 2.88A {Vibrio cholerae} SCOP: d.310.1.1 PDB: 2aj2_A Length = 211

 Score =  108 bits (272), Expect = 7e-29
 Identities = 31/181 (17%), Positives = 61/181 (33%), Gaps = 16/181 (8%)

Query: 122 KGCLLIATEKLDGVHIFERTVILLLSMEPMGPSGIILNRPSLMSIKEM------RSTVLD 175
               L+A   +   + F+R+VI +      G  G+++N P  +++  M            
Sbjct: 19  TNHFLVAMPSMKDPY-FKRSVIYICEHNQDGAMGLMINAPIDITVGGMLKQVDIEPAYPQ 77

Query: 176 AAGTFSDRPLFFGGPLEEGLFLVSPKGGGDEVGKSGVFEQVMEGLYFGTKETVGCAAEMV 235
           +      +P+F GGP+ E    +  +          + + +           +G      
Sbjct: 78  SHQENLKKPVFNGGPVSEDRGFILHRPRDHYESSMKMTDDIAVTTSKDILTVLG------ 131

Query: 236 KRNAVGPEDFRFFDGCCGWEKEQLNEEIRAGYWTVAACSPSVIGLESGTLGLWEELLWLM 295
                 PE +    G  GW   QL  E+    W      P +I   +     W++ +  +
Sbjct: 132 --TEAEPEGYIVALGYSGWSAGQLEVELTENSWLTIEADPELI-FNTPVHEKWQKAIQKL 188

Query: 296 G 296
           G
Sbjct: 189 G 189

>2gzo_A UPF0301 protein SO3346; GFT-protein structure, nesgc, alpha-beta, structural genomics, PSI, protein structure initiative; NMR {Shewanella oneidensis} SCOP: d.310.1.1 Length = 195

 Score =   99 bits (249), Expect = 1e-25
 Identities = 36/180 (20%), Positives = 64/180 (35%), Gaps = 15/180 (8%)

Query: 122 KGCLLIATEKLDGVHIFERTVILLLSMEPMGPSGIILNRPSLMSIKEM-----RSTVLDA 176
           +   LIA   LD    FERTVI L   +  G  G+++N+P  + +  +       T   +
Sbjct: 5   QNHFLIAMPSLDDTF-FERTVIYLCEHDEKGAMGLVINKPLGIEVNSLLEQMDLPTEQVS 63

Query: 177 AGTFSDRPLFFGGPLEEGLFLVSPKGGGDEVGKSGVFEQVMEGLYFGTKETVGCAAEMVK 236
           A       +  GGP+ +    V           + +   +M          +G       
Sbjct: 64  ADLAMGSQVLMGGPVSQDRGFVLHTSQPYWANSTELGSGLMLTTSRDVLTAIG------- 116

Query: 237 RNAVGPEDFRFFDGCCGWEKEQLNEEIRAGYWTVAACSPSVIGLESGTLGLWEELLWLMG 296
            +   P+ F    G  GW K QL +E+    W       +++  +      W++    +G
Sbjct: 117 -SKRSPDKFLVALGYAGWSKNQLEQELADNSWLTIPADHALL-FDINHEDRWQQASRSLG 174

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	301
2ew0_A	192	Hypothetical protein aciad0353; Q5FF54, ASR1, NESG	100.0
2gzo_A	195	UPF0301 protein SO3346; GFT-protein structure, nes	100.0
2haf_A	211	Putative translation repressor; alpha/beta, X-RAY	100.0
2do8_A	188	UPF0301 protein HD_1794; NESG, GFT structral genom	100.0
2gs5_A	198	Conserved hypothetical protein; corvnebacterium di	100.0

>2ew0_A Hypothetical protein aciad0353; Q5FF54, ASR1, NESG, structural genomics, PSI, protein struct initiative; 1.40A {Acinetobacter SP} SCOP: d.310.1.1

Probab=100.00  E-value=2.4e-49  Score=352.66  Aligned_cols=169  Identities=25%  Similarity=0.397  Sum_probs=144.8

Q ss_pred             cCCCCCCcEEEecCCCCCCCCcCceEEEEEEeCCCCcEEEEecCCCCccHHHHHHhhhcccC-CCCCCCeEecCCccC--
Q 022178          117 IHEPEKGCLLIATEKLDGVHIFERTVILLLSMEPMGPSGIILNRPSLMSIKEMRSTVLDAAG-TFSDRPLFFGGPLEE--  193 (301)
Q Consensus       117 ~~~pe~G~LLIAtP~L~d~~~F~RSVILLleH~e~Ga~GLILNRP~~~~l~~l~~~~~dl~~-~~~~~pvy~GGPV~~--  193 (301)
                      +.++++|+||||+|.|.|+ +|+|||||||+|+++||||||||||++++++++++++ ++.. .+.+.|||+||||++  
T Consensus         2 t~~~l~G~lLIA~P~l~d~-~F~rSVIli~eH~~~Ga~GlIlNrP~~~~l~~ll~~l-~~~~~~~~~~~v~~GGPV~~~r   79 (192)
T 2ew0_A            2 TKQYLTHRCLIAPPEMADD-FFANTVIYLARHDEEGAQGIIINRPAGIQIKELLNDL-DIDADNVNPHEVLQGGPLRPEA   79 (192)
T ss_dssp             ---CCTTEEEECCTTCCCT-TTTTCEEEEEEEETTEEEEEECSCEEEEEHHHHHHHT-TCCCTTCCCCEEEECCSEEEEE
T ss_pred             CcccCCCeEEEeCCCCCCC-CccceEEEEEEeCCCceeEEEecCCCCCCHHHHHHhh-CcccccCCCCeeEECCCcCCCc
Confidence            3567999999999999975 9999999999999999999999999999999998876 3321 233789999999996  


Q ss_pred             CeEEEccCCCCCccCCCcceeeeecceeeccchhhhhhHHHHHhccCCCCceEEEeeccCCChhHHHHHHHcCCeEEccC
Q 022178          194 GLFLVSPKGGGDEVGKSGVFEQVMEGLYFGTKETVGCAAEMVKRNAVGPEDFRFFDGCCGWEKEQLNEEIRAGYWTVAAC  273 (301)
Q Consensus       194 ~~~L~~~~~~~~~~~~~~~~~eV~~Gly~g~~~~v~~a~elv~~g~~~~~dfrfF~GYsGW~pGQLE~EI~~G~W~va~a  273 (301)
                      +|+||......      ..+.+|.+|||++++.++   .+.+.+| .+|++||||+|||||++||||+||++|+|++++|
T Consensus        80 gfvLH~~~~~~------~~s~~v~~gv~lt~s~d~---l~~i~~~-~~p~~~~~flGYaGW~~GQLe~Ei~~n~Wl~~~a  149 (192)
T 2ew0_A           80 GFVLHTGQPTW------HSSIAVGENVCITTSKDI---LDAIAHN-EGVGRYQIALGYASWGKNQLEDEIARGDWLICDA  149 (192)
T ss_dssp             EEEEEESCCCS------SSEEEEETTEEEECSSHH---HHHHHTT-CSCCSEEEEEEEEEECTTHHHHHHHTTCCEEEEC
T ss_pred             EEEEEeCCCCC------CCceEecCCeeeeCCHHH---HHHHhcC-CCCccEEEEEeecCCCHHHHHHHHHcCCEEEecC
Confidence            67888753211      125899999999998875   4556666 5789999999999999999999999999999999


Q ss_pred             CCCeeecCCCchhHHHHHHHhcCCC
Q 022178          274 SPSVIGLESGTLGLWEELLWLMGRR  298 (301)
Q Consensus       274 s~~li~f~~~~~~lW~e~L~~~Gg~  298 (301)
                      ++++| |+.+++++|+++|++||++
T Consensus       150 ~~~~l-f~~~~~~~W~~al~~lG~~  173 (192)
T 2ew0_A          150 DMDLI-FNLPYDDRWDAAYKKIGVD  173 (192)
T ss_dssp             CHHHH-TTSCGGGHHHHHHHHGGGS
T ss_pred             CHHHh-hCCCHHHHHHHHHHHhCCC
Confidence            99999 9999999999999999987

>2gzo_A UPF0301 protein SO3346; GFT-protein structure, nesgc, alpha-beta, structural genomics, PSI, protein structure initiative; NMR {Shewanella oneidensis} SCOP: d.310.1.1

Probab=100.00  E-value=2.7e-49  Score=353.03  Aligned_cols=167  Identities=23%  Similarity=0.447  Sum_probs=145.6

Q ss_pred             CCCCCcEEEecCCCCCCCCcCceEEEEEEeCCCCcEEEEecCCCCccHHHHHHhhhccc----CC--CCCCCeEecCCcc
Q 022178          119 EPEKGCLLIATEKLDGVHIFERTVILLLSMEPMGPSGIILNRPSLMSIKEMRSTVLDAA----GT--FSDRPLFFGGPLE  192 (301)
Q Consensus       119 ~pe~G~LLIAtP~L~d~~~F~RSVILLleH~e~Ga~GLILNRP~~~~l~~l~~~~~dl~----~~--~~~~pvy~GGPV~  192 (301)
                      .+++|+||||+|.|.|+ +|+|||||||+|+++||||||||||++++++++++++ ++.    ..  +.+.|||+||||+
T Consensus         2 ~~l~G~lLIA~P~l~d~-~F~rSVVli~eH~~~Ga~GlIiNrP~~~~l~~ll~~l-~~~~~~~~~~~~~~~~v~~GGPV~   79 (195)
T 2gzo_A            2 ESLQNHFLIAMPSLDDT-FFERTVIYLCEHDEKGAMGLVINKPLGIEVNSLLEQM-DLPTEQVSADLAMGSQVLMGGPVS   79 (195)
T ss_dssp             CCCSSEEEEECTTSCSC-SSSSEEEEECCCBTTBCCEEECSSCCCBCHHHHHHHH-TSCSSCCCCCCCCCSCBEESCSBT
T ss_pred             CCCCCeEEEeCCCCCCC-CccccEEEEEEeCCCceeEEEecCCCCCcHHHHHHhh-CcccccccccccCCCeEEECCCcC
Confidence            58999999999999975 9999999999999999999999999999999998876 321    11  4678999999999


Q ss_pred             C--CeEEEccCCCCCccCCCcceeeeecceeeccchhhhhhHHHHHhccCCCCceEEEeeccCCChhHHHHHHHcCCeEE
Q 022178          193 E--GLFLVSPKGGGDEVGKSGVFEQVMEGLYFGTKETVGCAAEMVKRNAVGPEDFRFFDGCCGWEKEQLNEEIRAGYWTV  270 (301)
Q Consensus       193 ~--~~~L~~~~~~~~~~~~~~~~~eV~~Gly~g~~~~v~~a~elv~~g~~~~~dfrfF~GYsGW~pGQLE~EI~~G~W~v  270 (301)
                      +  +|+||......      ..+.+|.+|||++++.++   .+.+.+| .+|++||||+|||||++||||+||++|+|++
T Consensus        80 ~~rgfvLH~~~~~~------~~s~~v~~gv~lt~s~di---l~~i~~~-~~p~~~~~flGYaGW~~GQLE~Ei~~n~Wl~  149 (195)
T 2gzo_A           80 QDRGFVLHTSQPYW------ANSTELGSGLMLTTSRDV---LTAIGSK-RSPDKFLVALGYAGWSKNQLEQELADNSWLT  149 (195)
T ss_dssp             TTSCCEEEECCSCS------SSCCCSSSSEEEECTTHH---HHHHTSC-CCSSCEECEECBCTHHHHCCHHHHHHHTCEE
T ss_pred             CCcEEEEEeCCCCC------CCceEecCCeeeeCCHHH---HHHHhcC-CCCccEEEEEeecCCCHHHHHHHHHcCCEEE
Confidence            6  68888753211      125789999999998875   4556666 5789999999999999999999999999999


Q ss_pred             ccCCCCeeecCCCchhHHHHHHHhcCCC
Q 022178          271 AACSPSVIGLESGTLGLWEELLWLMGRR  298 (301)
Q Consensus       271 a~as~~li~f~~~~~~lW~e~L~~~Gg~  298 (301)
                      ++|++++| |+.+++++|+++|++||++
T Consensus       150 ~~a~~~~l-f~~~~~~~W~~al~~lG~~  176 (195)
T 2gzo_A          150 IPADHALL-FDINHEDRWQQASRSLGFE  176 (195)
T ss_dssp             EECCHHHH-TTSCSSHHHHHHHHCCCCC
T ss_pred             ecCCHHHh-cCCCHHHHHHHHHHHhCCC
Confidence            99999999 9999999999999999987

>2haf_A Putative translation repressor; alpha/beta, X-RAY crystallography, structural genomics, PSI, protein structure initiative; 2.88A {Vibrio cholerae} SCOP: d.310.1.1 PDB: 2aj2_A

Probab=100.00  E-value=3.5e-49  Score=356.11  Aligned_cols=174  Identities=21%  Similarity=0.423  Sum_probs=149.3

Q ss_pred             CCCcccccCCCCCCcEEEecCCCCCCCCcCceEEEEEEeCCCCcEEEEecCCCCccHHHHHHhhhcccC---C----CCC
Q 022178          110 GDKWAHTIHEPEKGCLLIATEKLDGVHIFERTVILLLSMEPMGPSGIILNRPSLMSIKEMRSTVLDAAG---T----FSD  182 (301)
Q Consensus       110 ~~~WAh~~~~pe~G~LLIAtP~L~d~~~F~RSVILLleH~e~Ga~GLILNRP~~~~l~~l~~~~~dl~~---~----~~~  182 (301)
                      .-.|.|.+  +++|+||||+|.|.|+ +|+|||||||+|+++||||||||||++++++++++++ ++..   +    +.+
T Consensus         9 ~~~~~hs~--~l~G~lLIA~P~L~D~-~F~rSVVliceH~~~GamGlIiNrP~~~~l~~ll~~l-~~~~~~~~~~~~~~~   84 (211)
T 2haf_A            9 DIEVGHSM--NLTNHFLVAMPSMKDP-YFKRSVIYICEHNQDGAMGLMINAPIDITVGGMLKQV-DIEPAYPQSHQENLK   84 (211)
T ss_dssp             CCCCCCCC--CCTTEEEEECSSCCSG-GGTTCEEEEEEEETTEEEEEESSCEEEEEHHHHHHHT-TCCCSSCCCCCSGGG
T ss_pred             CCCCcCCC--CCCCeEEEeCCCCCCC-CcCccEEEEEEeCCCCeeEEEecCCCCCcHHHHHHhh-ccccccccccccccC
Confidence            44589998  4999999999999975 9999999999999999999999999999999998876 3311   1    357


Q ss_pred             CCeEecCCccC--CeEEEccCCCCCccCCCcceeeeecceeeccchhhhhhHHHHHhccCCCCceEEEeeccCCChhHHH
Q 022178          183 RPLFFGGPLEE--GLFLVSPKGGGDEVGKSGVFEQVMEGLYFGTKETVGCAAEMVKRNAVGPEDFRFFDGCCGWEKEQLN  260 (301)
Q Consensus       183 ~pvy~GGPV~~--~~~L~~~~~~~~~~~~~~~~~eV~~Gly~g~~~~v~~a~elv~~g~~~~~dfrfF~GYsGW~pGQLE  260 (301)
                      .|||+||||++  +|+||......      ..+.+|.+|||++++.++   .+.+.++ .++++||||+|||||++||||
T Consensus        85 ~~v~~GGPV~~~rgfvLH~~~~~~------~~s~~v~~gv~lt~s~di---l~~i~~~-~~p~~~~~flGYaGW~~GQLE  154 (211)
T 2haf_A           85 KPVFNGGPVSEDRGFILHRPRDHY------ESSMKMTDDIAVTTSKDI---LTVLGTE-AEPEGYIVALGYSGWSAGQLE  154 (211)
T ss_dssp             SEEEECCSEEEEEEEEEECCCSCC------SSEEECSSSCEEECSGGG---GGGTTST-TSCSSEEEEEEEEEEETTHHH
T ss_pred             CeEEECCCccCCcEEEEEecCCCC------CCceEecCCeeecCCHHH---HHHHhcC-CCCccEEEEeeecCCCHHHHH
Confidence            79999999996  67887753211      125899999999998875   3445555 578999999999999999999


Q ss_pred             HHHHcCCeEEccCCCCeeecCCCchhHHHHHHHhcCCC
Q 022178          261 EEIRAGYWTVAACSPSVIGLESGTLGLWEELLWLMGRR  298 (301)
Q Consensus       261 ~EI~~G~W~va~as~~li~f~~~~~~lW~e~L~~~Gg~  298 (301)
                      +||++|+|++++|++++| |+.+++++|+++|++||++
T Consensus       155 ~Ei~~n~Wl~~~a~~~~l-F~~~~~~~W~~al~~lG~d  191 (211)
T 2haf_A          155 VELTENSWLTIEADPELI-FNTPVHEKWQKAIQKLGIS  191 (211)
T ss_dssp             HHHHTTSEEEEECCHHHH-HSSCGGGHHHHHHHHTSCC
T ss_pred             HHHHcCCEEEecCCHHHh-cCCCHHHHHHHHHHHhCCC
Confidence            999999999999999999 9999999999999999987

>2do8_A UPF0301 protein HD_1794; NESG, GFT structral genomics, HDR14, structural genomics, PSI, protein structure initiative; NMR {Haemophilus ducreyi} SCOP: d.310.1.1

Probab=100.00  E-value=8.6e-49  Score=347.97  Aligned_cols=166  Identities=27%  Similarity=0.474  Sum_probs=143.6

Q ss_pred             CCCCcEEEecCCCCCCCCcCceEEEEEEeCCCCcEEEEecCCCCccHHHHHHhhhcccCC-----CCCCCeEecCCccC-
Q 022178          120 PEKGCLLIATEKLDGVHIFERTVILLLSMEPMGPSGIILNRPSLMSIKEMRSTVLDAAGT-----FSDRPLFFGGPLEE-  193 (301)
Q Consensus       120 pe~G~LLIAtP~L~d~~~F~RSVILLleH~e~Ga~GLILNRP~~~~l~~l~~~~~dl~~~-----~~~~pvy~GGPV~~-  193 (301)
                      .++|+||||+|.|.|+ +|+|||||||+|+++||||||||||++++++++++++ ++...     +.+.|||+||||++ 
T Consensus         4 ~l~G~lLIA~P~l~d~-~F~rSVVli~eH~~~Ga~GlIlNrp~~~~l~~ll~~~-~~~~~~~~~~~~~~~v~~GGPV~~~   81 (188)
T 2do8_A            4 NLQGKFIIATPEMDDE-YFDRTVIYICEHNDNGTIGVIINTPTDLSVLELLTRM-DFQMAKPRIYTQDQMVLNGGPVNQD   81 (188)
T ss_dssp             CCTTEEEECCCSCTTC-CSSCCCCEEEEEETTEEEEECSCCEEEEEHHHHHHHT-TCCCCCCGGGCCCCEEEECCSEEEE
T ss_pred             CCCCeEEEeCCCCCCC-CcCccEEEEEEeCCCCceEEEEeCCCCCCHHHHHHhh-cccccccccccCCCeEEECCCccCC
Confidence            4899999999999975 9999999999999999999999999999999998876 32111     35789999999996 


Q ss_pred             -CeEEEcc-CCCCCccCCCcceeeeecceeeccchhhhhhHHHHHhccCCCCceEEEeeccCCChhHHHHHHHcCCeEEc
Q 022178          194 -GLFLVSP-KGGGDEVGKSGVFEQVMEGLYFGTKETVGCAAEMVKRNAVGPEDFRFFDGCCGWEKEQLNEEIRAGYWTVA  271 (301)
Q Consensus       194 -~~~L~~~-~~~~~~~~~~~~~~eV~~Gly~g~~~~v~~a~elv~~g~~~~~dfrfF~GYsGW~pGQLE~EI~~G~W~va  271 (301)
                       +|+||.. ....      ..+.+|.+|||++++.++   .+.+.++ .+|++||||+|||||++||||+||++|+|+++
T Consensus        82 rgfvLH~~~~~~~------~~s~~v~~gv~lt~s~di---l~~i~~~-~~p~~~~~~lGYaGW~~GQLe~Ei~~n~Wl~~  151 (188)
T 2do8_A           82 RGFIVHSKTDHEF------THSYKVTDDITLTTSGDV---LDSFGTQ-TAPEKFIVCLGCSTWKPHQLEQEIAQNYWLLS  151 (188)
T ss_dssp             EEEEEECCCTTCC------SSEEESSSSCEEECSSHH---HHHTTST-TCCSCEEEEEEEEEECTTHHHHHHHTTSSEEE
T ss_pred             cEEEEEeCCCCCC------CCcEEecCCeeecCCHHH---HHHHhcC-CCCccEEEEEeecCCCHHHHHHHHHcCCEEEe
Confidence             6778773 2211      125799999999998874   4556565 57899999999999999999999999999999


Q ss_pred             cCCCCeeecCCCchhHHHHHHHhcCCC
Q 022178          272 ACSPSVIGLESGTLGLWEELLWLMGRR  298 (301)
Q Consensus       272 ~as~~li~f~~~~~~lW~e~L~~~Gg~  298 (301)
                      +|++++| |+.+++++|+++|++||++
T Consensus       152 ~a~~~~l-f~~~~~~~W~~al~~lG~~  177 (188)
T 2do8_A          152 EANNQTL-FETSYLDRWVEANEMLGIS  177 (188)
T ss_dssp             ECCTHHH-HTTTSSCCSSHHHHTTTSC
T ss_pred             cCCHHHh-hCCCHHHHHHHHHHHcCCC
Confidence            9999999 9999999999999999986

>2gs5_A Conserved hypothetical protein; corvnebacterium diphtheria, structural genomics, PSI; 1.50A {Corynebacterium diphtheriae nctc 13129ORGANISM_TAXID} SCOP: d.310.1.1 PDB: 2hrx_A

Probab=100.00  E-value=1.7e-48  Score=348.68  Aligned_cols=174  Identities=22%  Similarity=0.395  Sum_probs=146.6

Q ss_pred             CCCccccc--CCCCCCcEEEecCCCCCCCCcCceEEEEEEeCCCCcEEEEecCCCCccHHHHHHhhhcccCCCCCCCeEe
Q 022178          110 GDKWAHTI--HEPEKGCLLIATEKLDGVHIFERTVILLLSMEPMGPSGIILNRPSLMSIKEMRSTVLDAAGTFSDRPLFF  187 (301)
Q Consensus       110 ~~~WAh~~--~~pe~G~LLIAtP~L~d~~~F~RSVILLleH~e~Ga~GLILNRP~~~~l~~l~~~~~dl~~~~~~~pvy~  187 (301)
                      .++|+|..  ..+++|+||||+|.|.|+ +|+|||||||+|+++||||||||||++++++++++++...  .+.+.|||+
T Consensus         3 ~~~~~~~~~~~~~l~G~lLIA~P~L~d~-~F~rSVVli~eH~~~Ga~GlIlNrp~~~~l~~ll~~~~~~--~~~~~~v~~   79 (198)
T 2gs5_A            3 ADRLFNAMERNEPAPGMVLVAAPSMESE-DFARSVILIIEHSEYATFGVNLASRSDVAVFNVIPEWVPC--VTKPQALYI   79 (198)
T ss_dssp             CGGGGSSSCCCCCCTTEEEEECTTCCCT-TTTTCEEEEEEECSSCEEEEESSCEEEEEGGGTCGGGGGG--CCSSCEEEE
T ss_pred             cchhcccccccCCCCCeEEEeCCCCCCC-CccccEEEEEEeCCCCeeEEEecCCCCCCHHHHHHhhccc--ccCCCeEEE
Confidence            46899996  568999999999999975 9999999999999999999999999999999998876322  236789999


Q ss_pred             cCCccC--CeEEEccCCCCCccCCCcceeeeecc----eeeccchhhhhhHHHHHhccCCCCceEEEeeccCCChhHHHH
Q 022178          188 GGPLEE--GLFLVSPKGGGDEVGKSGVFEQVMEG----LYFGTKETVGCAAEMVKRNAVGPEDFRFFDGCCGWEKEQLNE  261 (301)
Q Consensus       188 GGPV~~--~~~L~~~~~~~~~~~~~~~~~eV~~G----ly~g~~~~v~~a~elv~~g~~~~~dfrfF~GYsGW~pGQLE~  261 (301)
                      ||||++  +|+||......+....  .+.+|.+|    ||++++.++   ++.+      .+++|||+|||||++||||+
T Consensus        80 GGPV~~~~gfvLH~~~~~~~~~~~--~s~~v~~g~~~~v~l~~s~d~---l~~~------~~~~~~flGYaGW~~GQLe~  148 (198)
T 2gs5_A           80 GGPLNQQSVVGVGVTAQGVDAARV--DNLTRLANRLVMVNLGADPEE---IKPL------VSGMRLFAGHAEWAPGQLAQ  148 (198)
T ss_dssp             CCSEEEEEEEEEEEECTTCCGGGC--TTEEEEETTEEEECTTSCHHH---HGGG------EEEEEEEEEEEEECTTHHHH
T ss_pred             CCCccCCeEEEEEecCccccccCC--CceEecCCCceeEEEcCCHHH---HHHH------hhccEEEeeEcCCChHHHHH
Confidence            999996  6788876422110001  24799999    999997663   2222      17899999999999999999


Q ss_pred             HHHcCCeEEccCCCCeeecCCCchhHHHHHHHhcCCC
Q 022178          262 EIRAGYWTVAACSPSVIGLESGTLGLWEELLWLMGRR  298 (301)
Q Consensus       262 EI~~G~W~va~as~~li~f~~~~~~lW~e~L~~~Gg~  298 (301)
                      ||++|+|++++|++++| |+.+++++|+++|++||++
T Consensus       149 Ei~~n~Wl~~~a~~~~l-f~~~~~~~W~~al~~lG~~  184 (198)
T 2gs5_A          149 EIENGDWFVAPALPSDV-TAPGSVDVWGDVMRRQPMP  184 (198)
T ss_dssp             HHHTTSEEEEECCHHHH-HCCTTCCHHHHHHHTSSTT
T ss_pred             HHHcCCEEEecCCHHHh-cCCCHHHHHHHHHHHcCCC
Confidence            99999999999999999 9999999999999999987

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	301
d2do8a1	186	d.310.1.1 (A:1-186) Hypothetical protein HD1794 {H	1e-24
d2gs5a1	193	d.310.1.1 (A:1-193) Hypothetical protein DIP2367 {	6e-24
d2hafa1	178	d.310.1.1 (A:15-192) Hypothetical protein VC0467 {	2e-22
d2ew0a1	175	d.310.1.1 (A:5-179) Hypothetical protein ACIAD0353	3e-22
d2gzoa1	187	d.310.1.1 (A:1-187) Hypotheical protein SO3346 {Sh	3e-20

>d2do8a1 d.310.1.1 (A:1-186) Hypothetical protein HD1794 {Haemophilus ducreyi [TaxId: 730]} Length = 186

class: Alpha and beta proteins (a+b)
fold: VC0467-like
superfamily: VC0467-like
family: VC0467-like
domain: Hypothetical protein HD1794
species: Haemophilus ducreyi [TaxId: 730]

 Score = 95.6 bits (237), Expect = 1e-24
 Identities = 43/179 (24%), Positives = 76/179 (42%), Gaps = 13/179 (7%)

Query: 122 KGCLLIATEKLDGVHIFERTVILLLSMEPMGPSGIILNRPSLMSIKEMRSTVLDAAGT-- 179
           +G  +IAT ++D  + F+RTVI +      G  G+I+N P+ +S+ E+ + +        
Sbjct: 6   QGKFIIATPEMDDEY-FDRTVIYICEHNDNGTIGVIINTPTDLSVLELLTRMDFQMAKPR 64

Query: 180 --FSDRPLFFGGPLEEGLFLVSPKGGGDEVGKSGVFEQVMEGLYFGTKETVGCAAEMVKR 237
               D+ +  GGP+ +    +       E   S    +V + +   T   V  +      
Sbjct: 65  IYTQDQMVLNGGPVNQDRGFIVHSKTDHEFTHS---YKVTDDITLTTSGDVLDSFGTQTA 121

Query: 238 NAVGPEDFRFFDGCCGWEKEQLNEEIRAGYWTVAACSPSVIGLESGTLGLWEELLWLMG 296
               PE F    GC  W+  QL +EI   YW ++  +   +  E+  L  W E   ++G
Sbjct: 122 ----PEKFIVCLGCSTWKPHQLEQEIAQNYWLLSEANNQTL-FETSYLDRWVEANEMLG 175

>d2gs5a1 d.310.1.1 (A:1-193) Hypothetical protein DIP2367 {Corynebacterium diphtheriae [TaxId: 1717]} Length = 193

class: Alpha and beta proteins (a+b)
fold: VC0467-like
superfamily: VC0467-like
family: VC0467-like
domain: Hypothetical protein DIP2367
species: Corynebacterium diphtheriae [TaxId: 1717]

 Score = 94.0 bits (233), Expect = 6e-24
 Identities = 36/178 (20%), Positives = 66/178 (37%), Gaps = 9/178 (5%)

Query: 119 EPEKGCLLIATEKLDGVHIFERTVILLLSMEPMGPSGIILNRPSLMSIKEMRSTVLDAAG 178
           EP  G +L+A   ++    F R+VIL++        G+ L   S +++  +    +    
Sbjct: 14  EPAPGMVLVAAPSMESED-FARSVILIIEHSEYATFGVNLASRSDVAVFNVIPEWVPC-- 70

Query: 179 TFSDRPLFFGGPLEEGLFLVSPKGGGDEVGKSGVFEQVMEGLYFGTKETVGCAAEMVKRN 238
               + L+ GGPL +   +     G     +     +V        +  +       +  
Sbjct: 71  VTKPQALYIGGPLNQQSVV-----GVGVTAQGVDAARVDNLTRLANRLVMVNLGADPEEI 125

Query: 239 AVGPEDFRFFDGCCGWEKEQLNEEIRAGYWTVAACSPSVIGLESGTLGLWEELLWLMG 296
                  R F G   W   QL +EI  G W VA   PS +    G++ +W +++    
Sbjct: 126 KPLVSGMRLFAGHAEWAPGQLAQEIENGDWFVAPALPSDV-TAPGSVDVWGDVMRRQP 182

>d2hafa1 d.310.1.1 (A:15-192) Hypothetical protein VC0467 {Vibrio cholerae [TaxId: 666]} Length = 178

class: Alpha and beta proteins (a+b)
fold: VC0467-like
superfamily: VC0467-like
family: VC0467-like
domain: Hypothetical protein VC0467
species: Vibrio cholerae [TaxId: 666]

 Score = 89.5 bits (221), Expect = 2e-22
 Identities = 30/181 (16%), Positives = 60/181 (33%), Gaps = 16/181 (8%)

Query: 122 KGCLLIATEKLDGVHIFERTVILLLSMEPMGPSGIILNRPS------LMSIKEMRSTVLD 175
               L+A   +   + F+R+VI +      G  G+++N P       ++   ++      
Sbjct: 5   TNHFLVAMPSMKDPY-FKRSVIYICEHNQDGAMGLMINAPIDITVGGMLKQVDIEPAYPQ 63

Query: 176 AAGTFSDRPLFFGGPLEEGLFLVSPKGGGDEVGKSGVFEQVMEGLYFGTKETVGCAAEMV 235
           +      +P+F GGP+ E    +  +          + + +                  V
Sbjct: 64  SHQENLKKPVFNGGPVSEDRGFILHRPRDHYESSMKMTDDIAVTTSKDI--------LTV 115

Query: 236 KRNAVGPEDFRFFDGCCGWEKEQLNEEIRAGYWTVAACSPSVIGLESGTLGLWEELLWLM 295
                 PE +    G  GW   QL  E+    W      P +I   +     W++ +  +
Sbjct: 116 LGTEAEPEGYIVALGYSGWSAGQLEVELTENSWLTIEADPELI-FNTPVHEKWQKAIQKL 174

Query: 296 G 296
           G
Sbjct: 175 G 175

>d2ew0a1 d.310.1.1 (A:5-179) Hypothetical protein ACIAD0353 {Acinetobacter sp. ADP1 [TaxId: 62977]} Length = 175

class: Alpha and beta proteins (a+b)
fold: VC0467-like
superfamily: VC0467-like
family: VC0467-like
domain: Hypothetical protein ACIAD0353
species: Acinetobacter sp. ADP1 [TaxId: 62977]

 Score = 89.5 bits (221), Expect = 3e-22
 Identities = 40/175 (22%), Positives = 61/175 (34%), Gaps = 10/175 (5%)

Query: 122 KGCLLIATEKLDGVHIFERTVILLLSMEPMGPSGIILNRPSLMSIKEMRSTVLDAAGTFS 181
               LIA  ++     F  TVI L   +  G  GII+NRP+ + IKE+ + +   A   +
Sbjct: 3   THRCLIAPPEMADDF-FANTVIYLARHDEEGAQGIIINRPAGIQIKELLNDLDIDADNVN 61

Query: 182 DRPLFFGGPLEEGLFLVSPKGGGDEVGKSGVFEQVMEGLYFGTKETVGCAAEMVKRNAVG 241
              +  GGPL      V   G         V E V         + +     +       
Sbjct: 62  PHEVLQGGPLRPEAGFVLHTGQPTWHSSIAVGENVCITTSKDILDAIAHNEGV------- 114

Query: 242 PEDFRFFDGCCGWEKEQLNEEIRAGYWTVAACSPSVIGLESGTLGLWEELLWLMG 296
              ++   G   W K QL +EI  G W +      +I         W+     +G
Sbjct: 115 -GRYQIALGYASWGKNQLEDEIARGDWLICDADMDLI-FNLPYDDRWDAAYKKIG 167

>d2gzoa1 d.310.1.1 (A:1-187) Hypotheical protein SO3346 {Shewanella oneidensis [TaxId: 70863]} Length = 187

class: Alpha and beta proteins (a+b)
fold: VC0467-like
superfamily: VC0467-like
family: VC0467-like
domain: Hypotheical protein SO3346
species: Shewanella oneidensis [TaxId: 70863]

 Score = 84.5 bits (208), Expect = 3e-20
 Identities = 37/180 (20%), Positives = 61/180 (33%), Gaps = 15/180 (8%)

Query: 122 KGCLLIATEKLDGVHIFERTVILLLSMEPMGPSGIILNRPSLMSIKEM-----RSTVLDA 176
           +   LIA   LD    FERTVI L   +  G  G+++N+P  + +  +       T   +
Sbjct: 5   QNHFLIAMPSLDDTF-FERTVIYLCEHDEKGAMGLVINKPLGIEVNSLLEQMDLPTEQVS 63

Query: 177 AGTFSDRPLFFGGPLEEGLFLVSPKGGGDEVGKSGVFEQVMEGLYFGTKETVGCAAEMVK 236
           A       +  GGP+ +    V                     L  G   T         
Sbjct: 64  ADLAMGSQVLMGGPVSQDRGFVLHTSQPYWAN--------STELGSGLMLTTSRDVLTAI 115

Query: 237 RNAVGPEDFRFFDGCCGWEKEQLNEEIRAGYWTVAACSPSVIGLESGTLGLWEELLWLMG 296
            +   P+ F    G  GW K QL +E+    W       +++  +      W++    +G
Sbjct: 116 GSKRSPDKFLVALGYAGWSKNQLEQELADNSWLTIPADHALL-FDINHEDRWQQASRSLG 174

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	301
d2ew0a1	175	Hypothetical protein ACIAD0353 {Acinetobacter sp.	100.0
d2gzoa1	187	Hypotheical protein SO3346 {Shewanella oneidensis	100.0
d2do8a1	186	Hypothetical protein HD1794 {Haemophilus ducreyi [	100.0
d2gs5a1	193	Hypothetical protein DIP2367 {Corynebacterium diph	100.0
d2hafa1	178	Hypothetical protein VC0467 {Vibrio cholerae [TaxI	100.0

>d2ew0a1 d.310.1.1 (A:5-179) Hypothetical protein ACIAD0353 {Acinetobacter sp. ADP1 [TaxId: 62977]}

class: Alpha and beta proteins (a+b)
fold: VC0467-like
superfamily: VC0467-like
family: VC0467-like
domain: Hypothetical protein ACIAD0353
species: Acinetobacter sp. ADP1 [TaxId: 62977]

Probab=100.00  E-value=2.2e-46  Score=325.78  Aligned_cols=168  Identities=25%  Similarity=0.383  Sum_probs=142.7

Q ss_pred             CCCCcEEEecCCCCCCCCcCceEEEEEEeCCCCcEEEEecCCCCccHHHHHHhhhcccCCCCCCCeEecCCccC--CeEE
Q 022178          120 PEKGCLLIATEKLDGVHIFERTVILLLSMEPMGPSGIILNRPSLMSIKEMRSTVLDAAGTFSDRPLFFGGPLEE--GLFL  197 (301)
Q Consensus       120 pe~G~LLIAtP~L~d~~~F~RSVILLleH~e~Ga~GLILNRP~~~~l~~l~~~~~dl~~~~~~~pvy~GGPV~~--~~~L  197 (301)
                      .++|+||||+|.|.|+ +|+|||||||+|+++|++|||||||++.+++++...+.-......+.+||+||||++  .++|
T Consensus         1 ~l~G~lLvA~P~l~d~-~F~~SVIli~~h~~~Ga~G~IlNkp~~~~l~~~~~~~~~~~~~~~~~~v~~GGPV~~~~~~~L   79 (175)
T d2ew0a1           1 YLTHRCLIAPPEMADD-FFANTVIYLARHDEEGAQGIIINRPAGIQIKELLNDLDIDADNVNPHEVLQGGPLRPEAGFVL   79 (175)
T ss_dssp             CCTTEEEECCTTCCCT-TTTTCEEEEEEEETTEEEEEECSCEEEEEHHHHHHHTTCCCTTCCCCEEEECCSEEEEEEEEE
T ss_pred             CCCCcEEEeCCCCCCC-CcCceEEEEEEECCCceEEEEecCCcccchhhhccccccccccccccceEecCCcccceeEEE
Confidence            3689999999999976 899999999999999999999999999999999876521122345778999999997  4567


Q ss_pred             EccCCCCCccCCCcceeeeecceeeccchhhhhhHHHHHhccCCCCceEEEeeccCCChhHHHHHHHcCCeEEccCCCCe
Q 022178          198 VSPKGGGDEVGKSGVFEQVMEGLYFGTKETVGCAAEMVKRNAVGPEDFRFFDGCCGWEKEQLNEEIRAGYWTVAACSPSV  277 (301)
Q Consensus       198 ~~~~~~~~~~~~~~~~~eV~~Gly~g~~~~v~~a~elv~~g~~~~~dfrfF~GYsGW~pGQLE~EI~~G~W~va~as~~l  277 (301)
                      |.....    .  +...++.+++|++++.++   .+.+..+ ..+.++|||+|||||++||||+||++|+|++++++.++
T Consensus        80 h~~~~~----~--~~~~~~~~~~~~~~~~~~---l~~i~~~-~~p~~~r~f~GysGW~~gQLe~Ei~~~~W~v~~~~~~~  149 (175)
T d2ew0a1          80 HTGQPT----W--HSSIAVGENVCITTSKDI---LDAIAHN-EGVGRYQIALGYASWGKNQLEDEIARGDWLICDADMDL  149 (175)
T ss_dssp             EESCCC----S--SSEEEEETTEEEECSSHH---HHHHHTT-CSCCSEEEEEEEEEECTTHHHHHHHTTCCEEEECCHHH
T ss_pred             eccCCC----c--cccccccccccccchhhH---Hhhhhhh-ccchhheeeeeecccCHHHHHHHHHcCCEEEccCCHHH
Confidence            764331    1  235789999999998763   5566665 46889999999999999999999999999999999999


Q ss_pred             eecCCCchhHHHHHHHhcCCCC
Q 022178          278 IGLESGTLGLWEELLWLMGRRK  299 (301)
Q Consensus       278 i~f~~~~~~lW~e~L~~~Gg~~  299 (301)
                      | |+.+++.+|++++++||++.
T Consensus       150 i-F~~~~~~~W~~~l~~~G~d~  170 (175)
T d2ew0a1         150 I-FNLPYDDRWDAAYKKIGVDR  170 (175)
T ss_dssp             H-TTSCGGGHHHHHHHHGGGSS
T ss_pred             h-hCCCHHHHHHHHHHHhCCCH
Confidence            9 99999999999999999983

>d2gzoa1 d.310.1.1 (A:1-187) Hypotheical protein SO3346 {Shewanella oneidensis [TaxId: 70863]}

class: Alpha and beta proteins (a+b)
fold: VC0467-like
superfamily: VC0467-like
family: VC0467-like
domain: Hypotheical protein SO3346
species: Shewanella oneidensis [TaxId: 70863]

Probab=100.00  E-value=1.4e-45  Score=323.47  Aligned_cols=167  Identities=22%  Similarity=0.419  Sum_probs=141.1

Q ss_pred             CCCCcEEEecCCCCCCCCcCceEEEEEEeCCCCcEEEEecCCCCccHHHHHHhhh-c----ccCCCCCCCeEecCCccC-
Q 022178          120 PEKGCLLIATEKLDGVHIFERTVILLLSMEPMGPSGIILNRPSLMSIKEMRSTVL-D----AAGTFSDRPLFFGGPLEE-  193 (301)
Q Consensus       120 pe~G~LLIAtP~L~d~~~F~RSVILLleH~e~Ga~GLILNRP~~~~l~~l~~~~~-d----l~~~~~~~pvy~GGPV~~-  193 (301)
                      ..+|+||||+|.|.|+ +|+|||||||+|+++|++|||||||++++++++++.+. .    ......+.|||+||||++ 
T Consensus         3 ~l~G~lLiA~P~l~d~-~F~~SVIli~eh~~~Ga~GlIlNkp~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~GGPV~~~   81 (187)
T d2gzoa1           3 SLQNHFLIAMPSLDDT-FFERTVIYLCEHDEKGAMGLVINKPLGIEVNSLLEQMDLPTEQVSADLAMGSQVLMGGPVSQD   81 (187)
T ss_dssp             CCSSEEEEECTTSCSC-SSSSEEEEECCCBTTBCCEEECSSCCCBCHHHHHHHHTSCSSCCCCCCCCCSCBEESCSBTTT
T ss_pred             CcCCcEEEeCCCCCCC-CcCceEEEEEEeCCCceEEEEecCccCCcHHHHHhhccCcccccccccccCcceeecccccCC
Confidence            3689999999999976 89999999999999999999999999999999987651 1    111234679999999997 


Q ss_pred             -CeEEEccCCCCCccCCCcceeeeecceeeccchhhhhhHHHHHhccCCCCceEEEeeccCCChhHHHHHHHcCCeEEcc
Q 022178          194 -GLFLVSPKGGGDEVGKSGVFEQVMEGLYFGTKETVGCAAEMVKRNAVGPEDFRFFDGCCGWEKEQLNEEIRAGYWTVAA  272 (301)
Q Consensus       194 -~~~L~~~~~~~~~~~~~~~~~eV~~Gly~g~~~~v~~a~elv~~g~~~~~dfrfF~GYsGW~pGQLE~EI~~G~W~va~  272 (301)
                       .+++|......      ..+.++.+++|++.+.+   ..+.+..+ ..+.++|||+|||||++||||+||++|+|++++
T Consensus        82 ~~~~lh~~~~~~------~~~~~~~~~~~~~~~~~---~l~~l~~~-~~p~~~~~f~GysGW~~gQLe~Ei~~~~W~~~~  151 (187)
T d2gzoa1          82 RGFVLHTSQPYW------ANSTELGSGLMLTTSRD---VLTAIGSK-RSPDKFLVALGYAGWSKNQLEQELADNSWLTIP  151 (187)
T ss_dssp             SCCEEEECCSCS------SSCCCSSSSEEEECTTH---HHHHHTSC-CCSSCEECEECBCTHHHHCCHHHHHHHTCEEEE
T ss_pred             cceeeecccccc------ccceeecccccccCcHH---HHHHHhhc-cCCceeeeehhhhccCHHHHHhhhccCCEEEec
Confidence             35666554311      12468999999999866   35566544 679999999999999999999999999999999


Q ss_pred             CCCCeeecCCCchhHHHHHHHhcCCC
Q 022178          273 CSPSVIGLESGTLGLWEELLWLMGRR  298 (301)
Q Consensus       273 as~~li~f~~~~~~lW~e~L~~~Gg~  298 (301)
                      +++++| |+.+++++|++++++||++
T Consensus       152 ~~~~~i-F~~~~~~~W~~~l~~lG~~  176 (187)
T d2gzoa1         152 ADHALL-FDINHEDRWQQASRSLGFE  176 (187)
T ss_dssp             CCHHHH-TTSCSSHHHHHHHHCCCCC
T ss_pred             CCHHHh-hCCCHHHHHHHHHHHcCCC
Confidence            999999 9999999999999999987

>d2do8a1 d.310.1.1 (A:1-186) Hypothetical protein HD1794 {Haemophilus ducreyi [TaxId: 730]}

class: Alpha and beta proteins (a+b)
fold: VC0467-like
superfamily: VC0467-like
family: VC0467-like
domain: Hypothetical protein HD1794
species: Haemophilus ducreyi [TaxId: 730]

Probab=100.00  E-value=3.3e-46  Score=327.67  Aligned_cols=169  Identities=25%  Similarity=0.454  Sum_probs=141.1

Q ss_pred             CCCCCcEEEecCCCCCCCCcCceEEEEEEeCCCCcEEEEecCCCCccHHHHHHhhh-ccc---CCCCCCCeEecCCccC-
Q 022178          119 EPEKGCLLIATEKLDGVHIFERTVILLLSMEPMGPSGIILNRPSLMSIKEMRSTVL-DAA---GTFSDRPLFFGGPLEE-  193 (301)
Q Consensus       119 ~pe~G~LLIAtP~L~d~~~F~RSVILLleH~e~Ga~GLILNRP~~~~l~~l~~~~~-dl~---~~~~~~pvy~GGPV~~-  193 (301)
                      ...+|+||||+|.|.|+ +|+|||||||+|+++|++|||||||++.++.++++++. ...   ....+.|||+||||++ 
T Consensus         3 ~~l~G~lLiA~P~l~d~-~F~~SVIli~eh~~~Ga~GlIlNkp~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~GGPV~~~   81 (186)
T d2do8a1           3 GNLQGKFIIATPEMDDE-YFDRTVIYICEHNDNGTIGVIINTPTDLSVLELLTRMDFQMAKPRIYTQDQMVLNGGPVNQD   81 (186)
T ss_dssp             SCCTTEEEECCCSCTTC-CSSCCCCEEEEEETTEEEEECSCCEEEEEHHHHHHHTTCCCCCCGGGCCCCEEEECCSEEEE
T ss_pred             ccccCCEEEeCCCCCCC-CcCceEEEEEEECCCceEEEEecCcccchhHhhhhhhccccccchhcccCccEEeCCCcCCC
Confidence            34799999999999975 89999999999999999999999999999999987651 111   1135789999999996 


Q ss_pred             -CeEEEccCCCCCccCCCcceeeeecceeeccchhhhhhHHHHHhccCCCCceEEEeeccCCChhHHHHHHHcCCeEEcc
Q 022178          194 -GLFLVSPKGGGDEVGKSGVFEQVMEGLYFGTKETVGCAAEMVKRNAVGPEDFRFFDGCCGWEKEQLNEEIRAGYWTVAA  272 (301)
Q Consensus       194 -~~~L~~~~~~~~~~~~~~~~~eV~~Gly~g~~~~v~~a~elv~~g~~~~~dfrfF~GYsGW~pGQLE~EI~~G~W~va~  272 (301)
                       .++||..... .    .....+|.+|+|++++.+   ..+.+..+ ..+.+||||+|||||+|||||+||++|+|++++
T Consensus        82 ~~~~Lh~~~~~-~----~~~~~~v~~~l~~~~~~~---~l~~~~~~-~~p~~~~~flGysGW~~gQLe~EI~~~~Wlv~~  152 (186)
T d2do8a1          82 RGFIVHSKTDH-E----FTHSYKVTDDITLTTSGD---VLDSFGTQ-TAPEKFIVCLGCSTWKPHQLEQEIAQNYWLLSE  152 (186)
T ss_dssp             EEEEEECCCTT-C----CSSEEESSSSCEEECSSH---HHHHTTST-TCCSCEEEEEEEEEECTTHHHHHHHTTSSEEEE
T ss_pred             ceeeeccCCCc-c----ccceEEecCceEEeehHH---HHhhhhhc-cCchhhhhhhcccccCHHHHHHHHhcCCEEEec
Confidence             3566653321 1    112578999999999866   35666555 478899999999999999999999999999999


Q ss_pred             CCCCeeecCCCchhHHHHHHHhcCCC
Q 022178          273 CSPSVIGLESGTLGLWEELLWLMGRR  298 (301)
Q Consensus       273 as~~li~f~~~~~~lW~e~L~~~Gg~  298 (301)
                      +++++| |+.+++++|++++++||..
T Consensus       153 ~~~~~i-F~~~~~~~W~~~l~~lGi~  177 (186)
T d2do8a1         153 ANNQTL-FETSYLDRWVEANEMLGIS  177 (186)
T ss_dssp             CCTHHH-HTTTSSCCSSHHHHTTTSC
T ss_pred             CCHHHh-hCCCHHHHHHHHHHHcCCc
Confidence            999999 9999999999999999965

>d2gs5a1 d.310.1.1 (A:1-193) Hypothetical protein DIP2367 {Corynebacterium diphtheriae [TaxId: 1717]}

class: Alpha and beta proteins (a+b)
fold: VC0467-like
superfamily: VC0467-like
family: VC0467-like
domain: Hypothetical protein DIP2367
species: Corynebacterium diphtheriae [TaxId: 1717]

Probab=100.00  E-value=3.2e-46  Score=329.51  Aligned_cols=173  Identities=21%  Similarity=0.342  Sum_probs=135.3

Q ss_pred             cccCCCCCCcEEEecCCCCCCCCcCceEEEEEEeCCCCcEEEEecCCCCccHHHHHHhhhcccCCCCCCCeEecCCccCC
Q 022178          115 HTIHEPEKGCLLIATEKLDGVHIFERTVILLLSMEPMGPSGIILNRPSLMSIKEMRSTVLDAAGTFSDRPLFFGGPLEEG  194 (301)
Q Consensus       115 h~~~~pe~G~LLIAtP~L~d~~~F~RSVILLleH~e~Ga~GLILNRP~~~~l~~l~~~~~dl~~~~~~~pvy~GGPV~~~  194 (301)
                      +....+++|+||||+|.|.|+ +|+|||||||+|+++|++|||||||++.++.+++.+..+..  ..+.+||+||||+..
T Consensus        10 ~~~n~~~~G~lLIA~P~l~d~-~F~~SVIli~eH~~~Ga~GlIlNkp~~~~~~~~~~~~~~~~--~~~~~v~~GGPV~~~   86 (193)
T d2gs5a1          10 MERNEPAPGMVLVAAPSMESE-DFARSVILIIEHSEYATFGVNLASRSDVAVFNVIPEWVPCV--TKPQALYIGGPLNQQ   86 (193)
T ss_dssp             SCCCCCCTTEEEEECTTCCCT-TTTTCEEEEEEECSSCEEEEESSCEEEEEGGGTCGGGGGGC--CSSCEEEECCSEEEE
T ss_pred             hhcCCCCCCeEEEeCCCCCCC-CcCccEEEEEEeCCCceEEEEeeccccccHHHHhhhhhhcc--ccCceEecCccccCC
Confidence            455679999999999999875 99999999999999999999999999999998876543322  357899999999973


Q ss_pred             --eEEEccCCCCCccCCCcceeeeecceeeccchhhhhhHHHHHhccCCCCceEEEeeccCCChhHHHHHHHcCCeEEcc
Q 022178          195 --LFLVSPKGGGDEVGKSGVFEQVMEGLYFGTKETVGCAAEMVKRNAVGPEDFRFFDGCCGWEKEQLNEEIRAGYWTVAA  272 (301)
Q Consensus       195 --~~L~~~~~~~~~~~~~~~~~eV~~Gly~g~~~~v~~a~elv~~g~~~~~dfrfF~GYsGW~pGQLE~EI~~G~W~va~  272 (301)
                        +++|......+       ...+.+.+++++...+.......+.....+.++|||+|||||+|||||+||++|+|++++
T Consensus        87 ~~~~lh~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~flGysGW~pGQLe~EI~~g~Wlv~~  159 (193)
T d2gs5a1          87 SVVGVGVTAQGVD-------AARVDNLTRLANRLVMVNLGADPEEIKPLVSGMRLFAGHAEWAPGQLAQEIENGDWFVAP  159 (193)
T ss_dssp             EEEEEEEECTTCC-------GGGCTTEEEEETTEEEECTTSCHHHHGGGEEEEEEEEEEEEECTTHHHHHHHTTSEEEEE
T ss_pred             ceEEeCccCCCCC-------cccccCceEecCcchhhhcccCcccccccccceEEEEEEeccCcHHHHHHHHcCcEEEcc
Confidence              45555433111       234555555555432211111112222346789999999999999999999999999999


Q ss_pred             CCCCeeecCCCchhHHHHHHHhcCCC
Q 022178          273 CSPSVIGLESGTLGLWEELLWLMGRR  298 (301)
Q Consensus       273 as~~li~f~~~~~~lW~e~L~~~Gg~  298 (301)
                      |++++| |..+++++|+++|++||++
T Consensus       160 ~~~~~i-F~~~~~~~W~~~l~~lG~~  184 (193)
T d2gs5a1         160 ALPSDV-TAPGSVDVWGDVMRRQPMP  184 (193)
T ss_dssp             CCHHHH-HCCTTCCHHHHHHHTSSTT
T ss_pred             CCHHHh-cCCCHHHHHHHHHHHcCCC
Confidence            999999 9999999999999999998

>d2hafa1 d.310.1.1 (A:15-192) Hypothetical protein VC0467 {Vibrio cholerae [TaxId: 666]}

class: Alpha and beta proteins (a+b)
fold: VC0467-like
superfamily: VC0467-like
family: VC0467-like
domain: Hypothetical protein VC0467
species: Vibrio cholerae [TaxId: 666]

Probab=100.00  E-value=1.5e-45  Score=320.96  Aligned_cols=167  Identities=21%  Similarity=0.420  Sum_probs=139.7

Q ss_pred             CCCCcEEEecCCCCCCCCcCceEEEEEEeCCCCcEEEEecCCCCccHHHHHHhhh-cc-----cCCCCCCCeEecCCccC
Q 022178          120 PEKGCLLIATEKLDGVHIFERTVILLLSMEPMGPSGIILNRPSLMSIKEMRSTVL-DA-----AGTFSDRPLFFGGPLEE  193 (301)
Q Consensus       120 pe~G~LLIAtP~L~d~~~F~RSVILLleH~e~Ga~GLILNRP~~~~l~~l~~~~~-dl-----~~~~~~~pvy~GGPV~~  193 (301)
                      -.+|+||||+|.|.|+ +|+|||||||+|+++||+|||||||++.+++++++++. +.     .....+.|||+||||++
T Consensus         3 nl~G~lLvA~P~l~d~-~F~~SVIli~eh~~~Ga~GlIlNkp~~~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~GGPV~~   81 (178)
T d2hafa1           3 NLTNHFLVAMPSMKDP-YFKRSVIYICEHNQDGAMGLMINAPIDITVGGMLKQVDIEPAYPQSHQENLKKPVFNGGPVSE   81 (178)
T ss_dssp             CCTTEEEEECSSCCSG-GGTTCEEEEEEEETTEEEEEESSCEEEEEHHHHHHHTTCCCSSCCCCCSGGGSEEEECCSEEE
T ss_pred             CCcCCEEEECCCCCCC-CcCceEEEEEEECCCcEEEEEEcCcccccHHHHHhhhcccccccccchhccccceEecccccC
Confidence            3699999999999975 89999999999999999999999999999999988762 11     11123568999999997


Q ss_pred             --CeEEEccCCCCCccCCCcceeeeecceeeccchhhhhhHHHHHhccCCCCceEEEeeccCCChhHHHHHHHcCCeEEc
Q 022178          194 --GLFLVSPKGGGDEVGKSGVFEQVMEGLYFGTKETVGCAAEMVKRNAVGPEDFRFFDGCCGWEKEQLNEEIRAGYWTVA  271 (301)
Q Consensus       194 --~~~L~~~~~~~~~~~~~~~~~eV~~Gly~g~~~~v~~a~elv~~g~~~~~dfrfF~GYsGW~pGQLE~EI~~G~W~va  271 (301)
                        .++||+....    .  ..+.+|.++++++.+.++   .+.+..+ ..+.++|||+|||||++||||+||++|+|+++
T Consensus        82 ~~~~~Lh~~~~~----~--~~~~~v~~~~~~~~~~~~---~~~l~~~-~~p~~~~~f~GysGW~~gQLe~Ei~~~sW~v~  151 (178)
T d2hafa1          82 DRGFILHRPRDH----Y--ESSMKMTDDIAVTTSKDI---LTVLGTE-AEPEGYIVALGYSGWSAGQLEVELTENSWLTI  151 (178)
T ss_dssp             EEEEEEECCCSC----C--SSEEECSSSCEEECSGGG---GGGTTST-TSCSSEEEEEEEEEEETTHHHHHHHTTSEEEE
T ss_pred             CceEEEecCCCC----C--CCcceecCcccccchhhH---HHHHhcC-cchhhhHHhhhhcccCHHHHHHHHHcCCEEEe
Confidence              3566654321    1  125789999999998764   4445444 57899999999999999999999999999999


Q ss_pred             cCCCCeeecCCCchhHHHHHHHhcCCC
Q 022178          272 ACSPSVIGLESGTLGLWEELLWLMGRR  298 (301)
Q Consensus       272 ~as~~li~f~~~~~~lW~e~L~~~Gg~  298 (301)
                      ++++++| |+.+++++|++++++||..
T Consensus       152 ~~~~~~i-f~~~~~~~W~~~l~~lGid  177 (178)
T d2hafa1         152 EADPELI-FNTPVHEKWQKAIQKLGIS  177 (178)
T ss_dssp             ECCHHHH-HSSCGGGHHHHHHHHTSCC
T ss_pred             cCCHHHh-cCCCHHHHHHHHHHHcCCC
Confidence            9999999 9999999999999999964