Citrus Sinensis ID: 022181

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-
MNYLIGAFKPACNISITFADGKNRKQVPLKKENGQTIMVPLFQSQENISGKISIEPVLGKKVEHNGVKIELLGQIEMYFDRGNFYDFTSLVRELDVPGEIYERKTYPFEFSTVEMPYETYNGVNVRLRYVLKVTVSRGYGGSVVEYQDFVVRNYTPPPSINNSIKMEVGIEDCLHIEFEYNKSKYHLKDVIIGKIYFLLVRIKIKNMDLEIRRRESTGSGANTHVETETLAKFELMDGAPVRGESIPIRLFLSPYELTPTHRNINNKFSVKYYLNLVLVDEEDRRYFKQQEITIYRLQENS
ccccccccccccEEEEEEccccccEEEEEEcccccEEEEEEEccccEEEEEEEEEEccccEEEEEEEEEEEEEEEEEEEccccEEEEEEEEEEEccccEEccccEEEEEEccccccEEEEEEcEEEEEEEEEEEEEccccccccEEEEEEEEEccccccccccccEEcccccEEEEEEEEEccEEEccccEEEEEEEEEEEEEEEEEEEEEEEEEEEcccccEEEEEEEEEEEEEEEccccccEEEEEEEEccccccccccccccccEEEEEEEEEEEEEccccEEEEEEEEEEEEEcccc
ccHHHHcccccEEEEEEEcccccccEEEEEcccccEEEEEEEEcccEEEEEEEEEEccccEEEEEEEEEEEEEEEEEEEccccHHHHHHHHHHHcccccccccccEcEEccccccccEEEccEEEEEEEEEEEEEEEccccccEEEEEEEEEEcccccccccccEEEEccccEEEEEEEEccccEEEccEEEEEEEEEEEEEEEEEEEEEEEEEEcccccccccccccEEEEEEEEcccccccccEEEEEEEcccccccccccccccEEEEEEEEEEEEcccccccEEcEEEEEEEccccc
mnyligafkpacnisitfadgknrkqvplkkengqtimvplfqsqenisgkisiepvlgkkvehngvkiELLGQIEmyfdrgnfydftslvreldvpgeiyerktypfefstvempyetyngvNVRLRYVLKVTVSrgyggsvveyQDFVvrnytpppsinnsikmevgIEDCLHIEFEynkskyhlkdvIIGKIYFLLVRIKIKNmdleirrrestgsganthvETETLAKFelmdgapvrgesipirlflspyeltpthrninnkFSVKYYLNLVLVDEEDRRYFKQQEITIYRLQENS
mnyligafkpacnisitfadgknrkqVPLKKENGQTIMVPlfqsqenisgKISIEPVLGKKVEHNGVKIELLGQIEMYFDRGNFYDFTSLVRELDVPGEIYERKtypfefstvempYETYNGVNVRLRYVLKVTVSRgyggsvveyqdfVVRNYTpppsinnsikMEVGIEDCLHIEFEYNKSKYHLKDVIIGKIYFLLVRIKIKNMDLEIrrrestgsganthvETETLAKFELMDGAPVRGESIPIRLFLSPYELTpthrninnkfsVKYYLNLVLVDEEDRRYFKQQEITIYRLQENS
MNYLIGAFKPACNISITFADGKNRKQVPLKKENGQTIMVPLFQSQENISGKISIEPVLGKKVEHNGVKIELLGQIEMYFDRGNFYDFTSLVRELDVPGEIYERKTYPFEFSTVEMPYETYNGVNVRLRYVLKVTVSRGYGGSVVEYQDFVVRNYTPPPSINNSIKMEVGIEDCLHIEFEYNKSKYHLKDVIIGKIYFLLVRIKIKNMDLEIRRRESTGSGANTHVETETLAKFELMDGAPVRGESIPIRLFLSPYELTPTHRNINNKFSVKYYLNLVLVDEEDRRYFKQQEITIYRLQENS
**YLIGAFKPACNISITFADGK************QTIMVPLFQSQENISGKISIEPVLGKKVEHNGVKIELLGQIEMYFDRGNFYDFTSLVRELDVPGEIYERKTYPFEFSTVEMPYETYNGVNVRLRYVLKVTVSRGYGGSVVEYQDFVVRNYTPPPSINNSIKMEVGIEDCLHIEFEYNKSKYHLKDVIIGKIYFLLVRIKIKNMDLEI****************ETLAKFELMDGAPVRGESIPIRLFLSPYELTPTHRNINNKFSVKYYLNLVLVDEEDRRYFKQQEITIYR*****
*N*****FKPACNISITFADGKNRKQV*****NGQTIMVPLFQSQENISGKISIEPV*G*KVEHNGVKIELLGQIEMYFDRGNFYDFTSL***********ERKTYPFEFSTVEMPYETYNGVNVRLRYVLKVTVSRGYGGSVVEYQDFVVR*******************DCLHIEFEYNKSKYHLKDVIIGKIYFLLVRIKIKNMDLEIRRRESTGSGANTHVETETLAKFELMDGAPVRGESIPIRLFLSPYELTPTHRNINNKFSVKYYLNLVLVDEEDRRYFKQQEITIYRLQ***
MNYLIGAFKPACNISITFADGKNRKQVPLKKENGQTIMVPLFQSQENISGKISIEPVLGKKVEHNGVKIELLGQIEMYFDRGNFYDFTSLVRELDVPGEIYERKTYPFEFSTVEMPYETYNGVNVRLRYVLKVTVSRGYGGSVVEYQDFVVRNYTPPPSINNSIKMEVGIEDCLHIEFEYNKSKYHLKDVIIGKIYFLLVRIKIKNMDLEIRRRESTGSGANTHVETETLAKFELMDGAPVRGESIPIRLFLSPYELTPTHRNINNKFSVKYYLNLVLVDEEDRRYFKQQEITIYRLQENS
*NYLIGAFKPACNISITFADGKNRKQVPLKKENGQTIMVPLFQSQENISGKISIEPVLGKKVEHNGVKIELLGQIEMYFDRGNFYDFTSLVRELDVPGEIYERKTYPFEFSTVEMPYETYNGVNVRLRYVLKVTVSRGYGGSVVEYQDFVVRNYTPPPSINNSIKMEVGIEDCLHIEFEYNKSKYHLKDVIIGKIYFLLVRIKIKNMDLEIRRRESTGSGANTHVETETLAKFELMDGAPVRGESIPIRLFLSPYELTPTHRNINNKFSVKYYLNLVLVDEEDRRYFKQQEITIYRLQ***
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MNYLIGAFKPACNISITFADGKNRKQVPLKKENGQTIMVPLFQSQENISGKISIEPVLGKKVEHNGVKIELLGQIEMYFDRGNFYDFTSLVRELDVPGEIYERKTYPFEFSTVEMPYETYNGVNVRLRYVLKVTVSRGYGGSVVEYQDFVVRNYTPPPSINNSIKMEVGIEDCLHIEFEYNKSKYHLKDVIIGKIYFLLVRIKIKNMDLEIRRRESTGSGANTHVETETLAKFELMDGAPVRGESIPIRLFLSPYELTPTHRNINNKFSVKYYLNLVLVDEEDRRYFKQQEITIYRLQENS
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query301 2.2.26 [Sep-21-2011]
Q9FJD0302 Vacuolar protein sorting- yes no 1.0 0.996 0.893 1e-160
Q9T091303 Vacuolar protein sorting- no no 1.0 0.993 0.887 1e-160
Q55CA0349 Vacuolar protein sorting- yes no 0.983 0.848 0.582 1e-100
Q5BKM4337 Vacuolar protein sorting- yes no 0.953 0.851 0.590 2e-98
Q68F29337 Vacuolar protein sorting- N/A no 0.953 0.851 0.590 4e-98
Q6AY86327 Vacuolar protein sorting- yes no 0.973 0.896 0.581 5e-98
Q6TNP8327 Vacuolar protein sorting- yes no 0.980 0.902 0.585 6e-98
Q6DFB9337 Vacuolar protein sorting- N/A no 0.953 0.851 0.587 1e-97
O75436327 Vacuolar protein sorting- yes no 0.973 0.896 0.585 1e-97
P40336327 Vacuolar protein sorting- yes no 0.973 0.896 0.581 2e-97
>sp|Q9FJD0|VP26A_ARATH Vacuolar protein sorting-associated protein 26A OS=Arabidopsis thaliana GN=VPS26A PE=2 SV=1 Back     alignment and function desciption
 Score =  565 bits (1455), Expect = e-160,   Method: Compositional matrix adjust.
 Identities = 269/301 (89%), Positives = 289/301 (96%)

Query: 1   MNYLIGAFKPACNISITFADGKNRKQVPLKKENGQTIMVPLFQSQENISGKISIEPVLGK 60
           MNYL+GAFKPACNISITF DGKNRKQVP KK+NGQ +M PLFQSQE I+GKI+IEP  GK
Sbjct: 1   MNYLLGAFKPACNISITFTDGKNRKQVPTKKDNGQIVMNPLFQSQETIAGKINIEPYQGK 60

Query: 61  KVEHNGVKIELLGQIEMYFDRGNFYDFTSLVRELDVPGEIYERKTYPFEFSTVEMPYETY 120
           KVEHNGVK+ELLGQIEMYFDRGNFYDFTSLVRE+DVPGEIYERKTYPFEFS+VEMPYETY
Sbjct: 61  KVEHNGVKVELLGQIEMYFDRGNFYDFTSLVREIDVPGEIYERKTYPFEFSSVEMPYETY 120

Query: 121 NGVNVRLRYVLKVTVSRGYGGSVVEYQDFVVRNYTPPPSINNSIKMEVGIEDCLHIEFEY 180
           NGVNVRLRYVLKVTV+RGY GS+VEYQDFVVRNY P P INNSIKMEVGIEDCLHIEFEY
Sbjct: 121 NGVNVRLRYVLKVTVTRGYAGSIVEYQDFVVRNYVPLPPINNSIKMEVGIEDCLHIEFEY 180

Query: 181 NKSKYHLKDVIIGKIYFLLVRIKIKNMDLEIRRRESTGSGANTHVETETLAKFELMDGAP 240
           NKSKYHLKDVI+GKIYFLLVRIKIKNMDLEIRRRESTG+GANTHVETETLAKFELMDGAP
Sbjct: 181 NKSKYHLKDVILGKIYFLLVRIKIKNMDLEIRRRESTGAGANTHVETETLAKFELMDGAP 240

Query: 241 VRGESIPIRLFLSPYELTPTHRNINNKFSVKYYLNLVLVDEEDRRYFKQQEITIYRLQEN 300
           VRGESIP+R+FL+PY+LTPTH+NINNKFSVKYYLNLVLVDEEDRRYFKQQEIT+YRL+E 
Sbjct: 241 VRGESIPVRVFLTPYDLTPTHKNINNKFSVKYYLNLVLVDEEDRRYFKQQEITLYRLKEE 300

Query: 301 S 301
           +
Sbjct: 301 T 301
Plays a role in vesicular protein sorting. Component of the membrane-associated retromer complex which is essential in endosome-to-Golgi retrograde transport. The VPS29-VPS26-VPS35 subcomplex may be involved in recycling of specific cargos from endosome to the plasma membrane.
Arabidopsis thaliana (taxid: 3702)
>sp|Q9T091|VP26B_ARATH Vacuolar protein sorting-associated protein 26B OS=Arabidopsis thaliana GN=VPS26B PE=2 SV=2 Back     alignment and function description
>sp|Q55CA0|VPS26_DICDI Vacuolar protein sorting-associated protein 26 OS=Dictyostelium discoideum GN=vps26 PE=2 SV=1 Back     alignment and function description
>sp|Q5BKM4|VP26B_XENTR Vacuolar protein sorting-associated protein 26B OS=Xenopus tropicalis GN=vps26b PE=2 SV=1 Back     alignment and function description
>sp|Q68F29|V26BA_XENLA Vacuolar protein sorting-associated protein 26B-A OS=Xenopus laevis GN=vps26b-a PE=2 SV=1 Back     alignment and function description
>sp|Q6AY86|VP26A_RAT Vacuolar protein sorting-associated protein 26A OS=Rattus norvegicus GN=Vps26a PE=2 SV=1 Back     alignment and function description
>sp|Q6TNP8|VP26A_DANRE Vacuolar protein sorting-associated protein 26A OS=Danio rerio GN=vps26a PE=2 SV=1 Back     alignment and function description
>sp|Q6DFB9|V26BB_XENLA Vacuolar protein sorting-associated protein 26B-B OS=Xenopus laevis GN=vps26b-b PE=2 SV=1 Back     alignment and function description
>sp|O75436|VP26A_HUMAN Vacuolar protein sorting-associated protein 26A OS=Homo sapiens GN=VPS26A PE=1 SV=2 Back     alignment and function description
>sp|P40336|VP26A_MOUSE Vacuolar protein sorting-associated protein 26A OS=Mus musculus GN=Vps26a PE=2 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query301
225455286301 PREDICTED: vacuolar protein sorting-asso 1.0 1.0 0.956 1e-167
399920197301 vacuolar protein sorting-associated [Ros 1.0 1.0 0.946 1e-165
224087377301 predicted protein [Populus trichocarpa] 1.0 1.0 0.930 1e-165
76573311301 vacuolar protein sorting-associated prot 1.0 1.0 0.926 1e-164
449453864301 PREDICTED: vacuolar protein sorting-asso 1.0 1.0 0.920 1e-163
224118542301 predicted protein [Populus trichocarpa] 1.0 1.0 0.926 1e-163
356517712302 PREDICTED: vacuolar protein sorting-asso 1.0 0.996 0.913 1e-162
356508247302 PREDICTED: vacuolar protein sorting-asso 1.0 0.996 0.906 1e-160
297796185302 hypothetical protein ARALYDRAFT_331709 [ 1.0 0.996 0.893 1e-159
15238773302 vacuolar protein sorting 26A [Arabidopsi 1.0 0.996 0.893 1e-158
>gi|225455286|ref|XP_002274585.1| PREDICTED: vacuolar protein sorting-associated protein 26-like [Vitis vinifera] Back     alignment and taxonomy information
 Score =  594 bits (1531), Expect = e-167,   Method: Compositional matrix adjust.
 Identities = 288/301 (95%), Positives = 296/301 (98%)

Query: 1   MNYLIGAFKPACNISITFADGKNRKQVPLKKENGQTIMVPLFQSQENISGKISIEPVLGK 60
           MNYLIGAFKP+CNISITFADGK+RKQVP+KKENGQT+MVPLFQSQENISGKISIEP+ GK
Sbjct: 1   MNYLIGAFKPSCNISITFADGKSRKQVPIKKENGQTVMVPLFQSQENISGKISIEPLQGK 60

Query: 61  KVEHNGVKIELLGQIEMYFDRGNFYDFTSLVRELDVPGEIYERKTYPFEFSTVEMPYETY 120
           KVEHNGVKIELLGQIEMYFDRGNFYDFTSLVRELDVPGEIYERKTYPFEFSTVEMPYETY
Sbjct: 61  KVEHNGVKIELLGQIEMYFDRGNFYDFTSLVRELDVPGEIYERKTYPFEFSTVEMPYETY 120

Query: 121 NGVNVRLRYVLKVTVSRGYGGSVVEYQDFVVRNYTPPPSINNSIKMEVGIEDCLHIEFEY 180
           NGVNVRLRYVLKVT+SRGYGGS+VEYQDFVVRNYTPPP IN SIKMEVGIEDCLHIEFEY
Sbjct: 121 NGVNVRLRYVLKVTISRGYGGSIVEYQDFVVRNYTPPPEINTSIKMEVGIEDCLHIEFEY 180

Query: 181 NKSKYHLKDVIIGKIYFLLVRIKIKNMDLEIRRRESTGSGANTHVETETLAKFELMDGAP 240
           NKSKYHLKDVIIGKIYFLLVRIKIKNMDLEIRRRESTGSGANTHVETETLAKFELMDGAP
Sbjct: 181 NKSKYHLKDVIIGKIYFLLVRIKIKNMDLEIRRRESTGSGANTHVETETLAKFELMDGAP 240

Query: 241 VRGESIPIRLFLSPYELTPTHRNINNKFSVKYYLNLVLVDEEDRRYFKQQEITIYRLQEN 300
           VRGESIPIRLFLSPYELTPTHRNINNKFSVKYYLNLVLVDEEDRRYFKQQEIT+YRL E 
Sbjct: 241 VRGESIPIRLFLSPYELTPTHRNINNKFSVKYYLNLVLVDEEDRRYFKQQEITVYRLPET 300

Query: 301 S 301
           S
Sbjct: 301 S 301

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|399920197|gb|AFP55544.1| vacuolar protein sorting-associated [Rosa rugosa] Back     alignment and taxonomy information
>gi|224087377|ref|XP_002308142.1| predicted protein [Populus trichocarpa] gi|118484475|gb|ABK94113.1| unknown [Populus trichocarpa] gi|222854118|gb|EEE91665.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|76573311|gb|ABA46760.1| vacuolar protein sorting-associated protein 26-like protein [Solanum tuberosum] Back     alignment and taxonomy information
>gi|449453864|ref|XP_004144676.1| PREDICTED: vacuolar protein sorting-associated protein 26A-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|224118542|ref|XP_002331388.1| predicted protein [Populus trichocarpa] gi|222873602|gb|EEF10733.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|356517712|ref|XP_003527530.1| PREDICTED: vacuolar protein sorting-associated protein 26-like [Glycine max] Back     alignment and taxonomy information
>gi|356508247|ref|XP_003522870.1| PREDICTED: vacuolar protein sorting-associated protein 26-like [Glycine max] Back     alignment and taxonomy information
>gi|297796185|ref|XP_002865977.1| hypothetical protein ARALYDRAFT_331709 [Arabidopsis lyrata subsp. lyrata] gi|297311812|gb|EFH42236.1| hypothetical protein ARALYDRAFT_331709 [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information
>gi|15238773|ref|NP_200165.1| vacuolar protein sorting 26A [Arabidopsis thaliana] gi|75171014|sp|Q9FJD0.1|VP26A_ARATH RecName: Full=Vacuolar protein sorting-associated protein 26A; AltName: Full=Vesicle protein sorting 26A gi|9759192|dbj|BAB09729.1| vacuolar sorting protein-like; embryogenesis protein H beta 58-like protein [Arabidopsis thaliana] gi|110735821|dbj|BAE99887.1| vacuolar sorting protein-like [Arabidopsis thaliana] gi|332008990|gb|AED96373.1| vacuolar protein sorting 26A [Arabidopsis thaliana] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query301
TAIR|locus:2168636302 VPS26A "AT5G53530" [Arabidopsi 1.0 0.996 0.893 1.5e-147
TAIR|locus:2137787303 VPS26B "AT4G27690" [Arabidopsi 1.0 0.993 0.887 6.4e-147
DICTYBASE|DDB_G0269168349 vps26 "vacuolar protein sortin 0.983 0.848 0.582 3.8e-94
UNIPROTKB|E1BU33326 VPS26A "Uncharacterized protei 0.980 0.904 0.581 8.1e-92
ZFIN|ZDB-GENE-040426-1108327 vps26a "vacuolar protein sorti 0.980 0.902 0.585 8.1e-92
RGD|1359254327 Vps26a "vacuolar protein sorti 0.973 0.896 0.581 1.3e-91
UNIPROTKB|Q6AY86327 Vps26a "Vacuolar protein sorti 0.973 0.896 0.581 1.3e-91
UNIPROTKB|O75436327 VPS26A "Vacuolar protein sorti 0.973 0.896 0.585 2.1e-91
UNIPROTKB|Q0VD53327 VPS26A "Vacuolar protein sorti 0.973 0.896 0.581 2.7e-91
MGI|MGI:1353654327 Vps26a "vacuolar protein sorti 0.973 0.896 0.581 2.7e-91
TAIR|locus:2168636 VPS26A "AT5G53530" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1441 (512.3 bits), Expect = 1.5e-147, P = 1.5e-147
 Identities = 269/301 (89%), Positives = 289/301 (96%)

Query:     1 MNYLIGAFKPACNISITFADGKNRKQVPLKKENGQTIMVPLFQSQENISGKISIEPVLGK 60
             MNYL+GAFKPACNISITF DGKNRKQVP KK+NGQ +M PLFQSQE I+GKI+IEP  GK
Sbjct:     1 MNYLLGAFKPACNISITFTDGKNRKQVPTKKDNGQIVMNPLFQSQETIAGKINIEPYQGK 60

Query:    61 KVEHNGVKIELLGQIEMYFDRGNFYDFTSLVRELDVPGEIYERKTYPFEFSTVEMPYETY 120
             KVEHNGVK+ELLGQIEMYFDRGNFYDFTSLVRE+DVPGEIYERKTYPFEFS+VEMPYETY
Sbjct:    61 KVEHNGVKVELLGQIEMYFDRGNFYDFTSLVREIDVPGEIYERKTYPFEFSSVEMPYETY 120

Query:   121 NGVNVRLRYVLKVTVSRGYGGSVVEYQDFVVRNYTPPPSINNSIKMEVGIEDCLHIEFEY 180
             NGVNVRLRYVLKVTV+RGY GS+VEYQDFVVRNY P P INNSIKMEVGIEDCLHIEFEY
Sbjct:   121 NGVNVRLRYVLKVTVTRGYAGSIVEYQDFVVRNYVPLPPINNSIKMEVGIEDCLHIEFEY 180

Query:   181 NKSKYHLKDVIIGKIYFLLVRIKIKNMDLEIRRRESTGSGANTHVETETLAKFELMDGAP 240
             NKSKYHLKDVI+GKIYFLLVRIKIKNMDLEIRRRESTG+GANTHVETETLAKFELMDGAP
Sbjct:   181 NKSKYHLKDVILGKIYFLLVRIKIKNMDLEIRRRESTGAGANTHVETETLAKFELMDGAP 240

Query:   241 VRGESIPIRLFLSPYELTPTHRNINNKFSVKYYLNLVLVDEEDRRYFKQQEITIYRLQEN 300
             VRGESIP+R+FL+PY+LTPTH+NINNKFSVKYYLNLVLVDEEDRRYFKQQEIT+YRL+E 
Sbjct:   241 VRGESIPVRVFLTPYDLTPTHKNINNKFSVKYYLNLVLVDEEDRRYFKQQEITLYRLKEE 300

Query:   301 S 301
             +
Sbjct:   301 T 301
GO:0003674 "molecular_function" evidence=ND
GO:0006886 "intracellular protein transport" evidence=ISS
GO:0007034 "vacuolar transport" evidence=IEA
GO:0009507 "chloroplast" evidence=ISM
GO:0042147 "retrograde transport, endosome to Golgi" evidence=ISS
GO:0005771 "multivesicular body" evidence=IDA
GO:0008333 "endosome to lysosome transport" evidence=ISS
GO:0016020 "membrane" evidence=IDA
GO:0030904 "retromer complex" evidence=ISS;IDA
GO:0043231 "intracellular membrane-bounded organelle" evidence=IDA
GO:0000902 "cell morphogenesis" evidence=RCA
GO:0006623 "protein targeting to vacuole" evidence=RCA
GO:0006944 "cellular membrane fusion" evidence=RCA
GO:0016049 "cell growth" evidence=RCA
GO:0016192 "vesicle-mediated transport" evidence=RCA
GO:0016197 "endosomal transport" evidence=RCA
GO:0048193 "Golgi vesicle transport" evidence=RCA
TAIR|locus:2137787 VPS26B "AT4G27690" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
DICTYBASE|DDB_G0269168 vps26 "vacuolar protein sorting-associated protein 26" [Dictyostelium discoideum (taxid:44689)] Back     alignment and assigned GO terms
UNIPROTKB|E1BU33 VPS26A "Uncharacterized protein" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
ZFIN|ZDB-GENE-040426-1108 vps26a "vacuolar protein sorting 26 homolog A (yeast)" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
RGD|1359254 Vps26a "vacuolar protein sorting 26 homolog A (S. pombe)" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
UNIPROTKB|Q6AY86 Vps26a "Vacuolar protein sorting-associated protein 26A" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
UNIPROTKB|O75436 VPS26A "Vacuolar protein sorting-associated protein 26A" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|Q0VD53 VPS26A "Vacuolar protein sorting-associated protein 26A" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
MGI|MGI:1353654 Vps26a "vacuolar protein sorting 26 homolog A (yeast)" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q5BKM4VP26B_XENTRNo assigned EC number0.59040.95340.8516yesno
Q6DFU4V26AB_XENLANo assigned EC number0.57850.97340.8987N/Ano
Q6AY86VP26A_RATNo assigned EC number0.58190.97340.8960yesno
Q68F29V26BA_XENLANo assigned EC number0.59040.95340.8516N/Ano
Q6DFB9V26BB_XENLANo assigned EC number0.58700.95340.8516N/Ano
Q55CA0VPS26_DICDINo assigned EC number0.58240.98330.8481yesno
Q8I4T1VPS26_PLAF7No assigned EC number0.52240.95680.9696yesno
Q9T091VP26B_ARATHNo assigned EC number0.88701.00.9933nono
Q9FJD0VP26A_ARATHNo assigned EC number0.89361.00.9966yesno
Q10243VPS26_SCHPONo assigned EC number0.48160.98000.9899yesno
Q6IRD0V26AA_XENLANo assigned EC number0.57520.97340.8987N/Ano
Q5R436VP26B_PONABNo assigned EC number0.58020.95340.8541yesno
P40336VP26A_MOUSENo assigned EC number0.58190.97340.8960yesno
O75436VP26A_HUMANNo assigned EC number0.58520.97340.8960yesno
Q9W552VPS26_DROMENo assigned EC number0.55510.96340.6066yesno
Q0VD53VP26A_BOVINNo assigned EC number0.58190.97340.8960yesno
Q6TNP8VP26A_DANRENo assigned EC number0.58580.98000.9021yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query301
pfam03643275 pfam03643, Vps26, Vacuolar protein sorting-associa 1e-155
>gnl|CDD|146336 pfam03643, Vps26, Vacuolar protein sorting-associated protein 26 Back     alignment and domain information 
 Score =  435 bits (1120), Expect = e-155
 Identities = 178/276 (64%), Positives = 221/276 (80%), Gaps = 1/276 (0%)

Query: 8   FKPACNISITFADGKNRKQVPLKKENGQTIMVPLFQSQENISGKISIEPVLGKKVEHNGV 67
           F P C+I I   + + RK V +K E+G+    P++   E++SGK++I    GKKVEH G+
Sbjct: 1   FGPPCDIEIVLDNEETRKTVEVKTEDGKKEKNPVYYDGESVSGKVNIRLKDGKKVEHQGI 60

Query: 68  KIELLGQIEMYFDRGNFYDFTSLVRELDVPGEIYERKTYPFEFSTVEMPYETYNGVNVRL 127
           KIE +GQIE+++DRGN ++FT+LVREL  PGE+ + KT+PFEF  VE PYE+Y GVNVRL
Sbjct: 61  KIEFVGQIELFYDRGNPHEFTNLVRELAPPGELTQSKTFPFEFPLVEKPYESYIGVNVRL 120

Query: 128 RYVLKVTVSRGYGGSVVEYQDFVVRNYTPPPSINNSIKMEVGIEDCLHIEFEYNKSKYHL 187
           RY L+VTV R     + + +DF V N+T  P  NNSIKMEVGIEDCLHIEFEYNKSKYHL
Sbjct: 121 RYFLRVTVVRRLT-DITKEKDFWVHNFTTYPETNNSIKMEVGIEDCLHIEFEYNKSKYHL 179

Query: 188 KDVIIGKIYFLLVRIKIKNMDLEIRRRESTGSGANTHVETETLAKFELMDGAPVRGESIP 247
           KDVI+GKIYFLLVRIKIK+M+L++ RRESTG+G NT  E+ET+AKFE+MDGAPVRGESIP
Sbjct: 180 KDVIVGKIYFLLVRIKIKHMELQLIRRESTGTGPNTFTESETIAKFEIMDGAPVRGESIP 239

Query: 248 IRLFLSPYELTPTHRNINNKFSVKYYLNLVLVDEED 283
           IRLFL+ Y+LTPT R++N KFSVKY+LNLVLVDEED
Sbjct: 240 IRLFLAGYDLTPTMRDVNKKFSVKYFLNLVLVDEED 275

Vacuolar protein sorting-associated protein (Vps) 26 is one of around 50 proteins involved in protein trafficking. In particular, Vps26 assembles into a retromer complex with at least four other proteins Vps5, Vps17, Vps29 and Vps35. This family also contains Down syndrome critical region 3/A. Length = 275

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 301
KOG3063301 consensus Membrane coat complex Retromer, subunit 100.0
PF03643275 Vps26: Vacuolar protein sorting-associated protein 100.0
KOG2717313 consensus Uncharacterized conserved protein with s 100.0
KOG3780 427 consensus Thioredoxin binding protein TBP-2/VDUP1 99.95
PF00339149 Arrestin_N: Arrestin (or S-antigen), N-terminal do 99.83
PF02752136 Arrestin_C: Arrestin (or S-antigen), C-terminal do 98.94
PF08737415 Rgp1: Rgp1; InterPro: IPR014848 Rgp1 forms heterod 98.74
PF07070218 Spo0M: SpoOM protein; InterPro: IPR009776 This fam 98.21
KOG3865402 consensus Arrestin [Signal transduction mechanisms 98.19
PF02752136 Arrestin_C: Arrestin (or S-antigen), C-terminal do 98.11
PF00339149 Arrestin_N: Arrestin (or S-antigen), N-terminal do 97.27
PF13002191 LDB19: Arrestin_N terminal like; InterPro: IPR0243 97.08
PF07070218 Spo0M: SpoOM protein; InterPro: IPR009776 This fam 96.77
PF04425438 Bul1_N: Bul1 N terminus; InterPro: IPR007519 This 96.45
PF03643 275 Vps26: Vacuolar protein sorting-associated protein 95.58
KOG3865402 consensus Arrestin [Signal transduction mechanisms 93.15
COG4326270 Spo0M Sporulation control protein [General functio 92.65
PF08737415 Rgp1: Rgp1; InterPro: IPR014848 Rgp1 forms heterod 88.03
PF0183599 A2M_N: MG2 domain; InterPro: IPR002890 The protein 87.85
KOG3780427 consensus Thioredoxin binding protein TBP-2/VDUP1 85.8
>KOG3063 consensus Membrane coat complex Retromer, subunit VPS26 [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information 
Probab=100.00  E-value=8.3e-101  Score=674.50  Aligned_cols=299  Identities=68%  Similarity=1.080  Sum_probs=295.5

Q ss_pred             CCcccCCCCCceEEEEEecCCCCceeEEeecCCCceEEeeeecCCCcEEEEEEEEeCCCcEEEEeEEEEEEEEEEEEEEc
Q 022181            1 MNYLIGAFKPACNISITFADGKNRKQVPLKKENGQTIMVPLFQSQENISGKISIEPVLGKKVEHNGVKIELLGQIEMYFD   80 (301)
Q Consensus         1 ~~~~~~~~~~~~~i~i~l~~~~~~~~~~~~~~~~~~~~~~iY~~Ge~VsG~V~i~~~~~k~~~h~gI~i~~~G~~e~~~~   80 (301)
                      |+|++|||+|+|+|+|.||++++|+.|+.+.++|++++.|+|++||+|+|+|.|++++||+++|+||+|+++|++|+.||
T Consensus         1 m~~l~~fF~~~~di~i~~~~~e~Rk~v~~k~e~g~~e~~~lf~dgEtv~G~V~l~lk~gkkleH~GikiefiGqIe~~~d   80 (301)
T KOG3063|consen    1 MNFLGGFFKPSIDIEILFDNEESRKQVDMKTEDGKKEKHPLFYDGETVSGKVNLRLKDGKKLEHQGIKIEFIGQIEMYYD   80 (301)
T ss_pred             CchhhcccCCCeeEEEEEcCchhheeccccccCCceeeeeeEecCCeeeeEEEEEEcCCcccccCceEEEEEEEEEEEec
Confidence            89999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCeEEEEEeEEEecCCcccCCCceEEEEEeCCCCCCCeeEEeeeEEEEEEEEEEEecCCCCceEEEEEEEEeCCCCCCC
Q 022181           81 RGNFYDFTSLVRELDVPGEIYERKTYPFEFSTVEMPYETYNGVNVRLRYVLKVTVSRGYGGSVVEYQDFVVRNYTPPPSI  160 (301)
Q Consensus        81 ~~~~~~~~~~~~~l~~~G~L~~g~~~pF~F~l~~~~~eSy~G~~~~irY~vkv~i~R~~~~~~~~~~eF~V~~~~~~p~~  160 (301)
                      +|+.++|.+++++|+.||+|.+.++|||+|+.++++||||.|+++++||++||++.|.+ .|++++++|||+.....|+.
T Consensus        81 rgn~~eF~~lv~eLa~pGel~~~~~fpFeF~~vekpyEsY~G~NV~lrY~lkvTv~Rr~-~di~ke~d~~V~~~~~~P~~  159 (301)
T KOG3063|consen   81 RGNFHEFTSLVRELARPGELTQSQSFPFEFPHVEKPYESYIGKNVRLRYFLKVTVSRRL-TDIVKEKDLVVHNLSTYPEI  159 (301)
T ss_pred             CCcHHHHHHHHHhhcCCcceeecccCCccccccccchhhhcCcceEEEEEEEEEEEech-hhhhhhhheeeEecccCCCC
Confidence            99999999999999999999999999999999999999999999999999999999999 49999999999999999999


Q ss_pred             CCCceeeecccceeEEEEEEeeeeEEcCCcEEEEEEEEEeeeeeeEEEEEEEEEEEecCCCceeEEeeEEEEEEEEeCCC
Q 022181          161 NNSIKMEVGIEDCLHIEFEYNKSKYHLKDVIIGKIYFLLVRIKIKNMDLEIRRRESTGSGANTHVETETLAKFELMDGAP  240 (301)
Q Consensus       161 ~~pi~~ev~i~~~L~i~f~~~k~~y~l~d~i~G~i~f~~s~~~Ik~iel~LiR~Et~~~~~~~~~e~~~i~~~qi~dG~~  240 (301)
                      ++||+|||||+|||||||+|+|++|||+|+|.|+|+|++++++|++||++|+|+|+.|.++++..+++|++++|||||+|
T Consensus       160 nn~IkmeVGIedCLHIEFEYnKskYhLkdvIvGkIYFlLvRikIk~Mel~iikrEstG~gpn~~~e~eTiakyeIMDGap  239 (301)
T KOG3063|consen  160 NNSIKMEVGIEDCLHIEFEYNKSKYHLKDVIVGKIYFLLVRIKIKHMELSIIKRESTGTGPNTYVETETIAKYEIMDGAP  239 (301)
T ss_pred             CCceeEeechhhceEEEEEecccccchhheEEeeEEEEEEEEEeeeeEEEEEEeecccCCCcceeccceeeeEEeccCCC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCceeeEEEeeCCCcCCCccccccceEEEEEEEEEEEEECCCcEEEEeeEEEEEEecCC
Q 022181          241 VRGESIPIRLFLSPYELTPTHRNINNKFSVKYYLNLVLVDEEDRRYFKQQEITIYRLQEN  300 (301)
Q Consensus       241 ~rg~~IPirl~l~~~~ltPt~~~~~~~fsV~y~lnlvli~~~~~~y~k~~~I~L~R~~~~  300 (301)
                      +|||+||||+||.+++||||++++|++|||+|+|||+|+|||||||||||||+|||+++.
T Consensus       240 vrGEsIPiRlFLagYdlTPtmrdinkkFsVkyyLnLVlvDeedRRYFKQqEItLwR~~d~  299 (301)
T KOG3063|consen  240 VRGESIPIRLFLAGYDLTPTMRDINKKFSVKYYLNLVLVDEEDRRYFKQQEITLWRKADE  299 (301)
T ss_pred             cCCCeeeeEEEecccCCCcchhhhcceeeeeeEEEEEEEchhhhhhhhheeEEEEEeccc
Confidence            999999999999999999999999999999999999999999999999999999999875

>PF03643 Vps26: Vacuolar protein sorting-associated protein 26 ; InterPro: IPR005377 The movement of lipid and protein components between intracellular organelles requires the regulated interactions of many molecules Back     alignment and domain information
>KOG2717 consensus Uncharacterized conserved protein with similarity to embryogenesis protein H beta 58 and VPS26 [General function prediction only] Back     alignment and domain information
>KOG3780 consensus Thioredoxin binding protein TBP-2/VDUP1 [General function prediction only] Back     alignment and domain information
>PF00339 Arrestin_N: Arrestin (or S-antigen), N-terminal domain; InterPro: IPR011021 G protein-coupled receptors are a large family of signalling molecules that respond to a wide variety of extracellular stimuli Back     alignment and domain information
>PF02752 Arrestin_C: Arrestin (or S-antigen), C-terminal domain; InterPro: IPR011022 G protein-coupled receptors are a large family of signalling molecules that respond to a wide variety of extracellular stimuli Back     alignment and domain information
>PF08737 Rgp1: Rgp1; InterPro: IPR014848 Rgp1 forms heterodimer with Ric1 (IPR009771 from INTERPRO) which associates with Golgi membranes and functions as a guanyl-nucleotide exchange factor [] Back     alignment and domain information
>PF07070 Spo0M: SpoOM protein; InterPro: IPR009776 This family consists of several bacterial SpoOM proteins which are thought to control sporulation in Bacillus subtilis Back     alignment and domain information
>KOG3865 consensus Arrestin [Signal transduction mechanisms] Back     alignment and domain information
>PF02752 Arrestin_C: Arrestin (or S-antigen), C-terminal domain; InterPro: IPR011022 G protein-coupled receptors are a large family of signalling molecules that respond to a wide variety of extracellular stimuli Back     alignment and domain information
>PF00339 Arrestin_N: Arrestin (or S-antigen), N-terminal domain; InterPro: IPR011021 G protein-coupled receptors are a large family of signalling molecules that respond to a wide variety of extracellular stimuli Back     alignment and domain information
>PF13002 LDB19: Arrestin_N terminal like; InterPro: IPR024391 This entry represents a predicted Ig-like beta sandwich domain found towards the N terminus of protein LDB19 [] Back     alignment and domain information
>PF07070 Spo0M: SpoOM protein; InterPro: IPR009776 This family consists of several bacterial SpoOM proteins which are thought to control sporulation in Bacillus subtilis Back     alignment and domain information
>PF04425 Bul1_N: Bul1 N terminus; InterPro: IPR007519 This domain is the N terminus of Saccharomyces cerevisiae (Baker's yeast) Bul1 Back     alignment and domain information
>PF03643 Vps26: Vacuolar protein sorting-associated protein 26 ; InterPro: IPR005377 The movement of lipid and protein components between intracellular organelles requires the regulated interactions of many molecules Back     alignment and domain information
>KOG3865 consensus Arrestin [Signal transduction mechanisms] Back     alignment and domain information
>COG4326 Spo0M Sporulation control protein [General function prediction only] Back     alignment and domain information
>PF08737 Rgp1: Rgp1; InterPro: IPR014848 Rgp1 forms heterodimer with Ric1 (IPR009771 from INTERPRO) which associates with Golgi membranes and functions as a guanyl-nucleotide exchange factor [] Back     alignment and domain information
>PF01835 A2M_N: MG2 domain; InterPro: IPR002890 The proteinase-binding alpha-macroglobulins (A2M) [] are large glycoproteins found in the plasma of vertebrates, in the hemolymph of some invertebrates and in reptilian and avian egg white Back     alignment and domain information
>KOG3780 consensus Thioredoxin binding protein TBP-2/VDUP1 [General function prediction only] Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query301
2fau_A341 Crystal Structure Of Human Vps26 Length = 341 8e-96
3lh8_A340 Crystal Structure Of Mouse Vps26b In Spacegroup P41 5e-95
3lha_A340 Crystal Structure Of Mouse Vps26b(R240sG241AE242S) 2e-94
2r51_A340 Crystal Structure Of Mouse Vps26b Length = 340 4e-94
>pdb|2FAU|A Chain A, Crystal Structure Of Human Vps26 Length = 341 Back     alignment and structure 
Iteration: 1

 Score =  346 bits (888), Expect = 8e-96,   Method: Compositional matrix adjust.
 Identities = 173/299 (57%), Positives = 227/299 (75%), Gaps = 6/299 (2%)
Query: 1   MNYLIGAFKPACNISITFADGKNRKQVPLKKENGQTIMVPLFQSQENISGKISI---EPV 57
           M++L G F P   I I   DG+ RK   +K E+G+     LF   E++SGK+++   +P 
Sbjct: 3   MSFLGGFFGPIXEIDIVLNDGETRKMAEMKTEDGKVEKHYLFYDGESVSGKVNLAFKQP- 61
Query: 58  LGKKVEHNGVKIELLGQIEMYFDRGNFYDFTSLVRELDVPGEIYERKTYPFEFSTVEMPY 117
            GK++EH G++IE +GQIE++ D+ N ++F +LV+EL +PGE+ + ++Y FEF  VE PY
Sbjct: 62  -GKRLEHQGIRIEFVGQIELFNDKSNTHEFVNLVKELALPGELTQSRSYDFEFMQVEKPY 120
Query: 118 ETYNGVNVRLRYVLKVTVSRGYGGSVVEYQDFVVRNYTPPPSINNSIKMEVGIEDCLHIE 177
           E+Y G NVRLRY LKVT+ R     V EY D +V      P +NNSIKMEVGIED LHIE
Sbjct: 121 ESYIGANVRLRYFLKVTIVRRLTDLVKEY-DLIVHQLATYPDVNNSIKMEVGIEDXLHIE 179
Query: 178 FEYNKSKYHLKDVIIGKIYFLLVRIKIKNMDLEIRRRESTGSGANTHVETETLAKFELMD 237
           FEYNKSKYHLKDVI+GKIYFLLVRIKI++M+L++ ++E TG G +T  ETET+AK+E+MD
Sbjct: 180 FEYNKSKYHLKDVIVGKIYFLLVRIKIQHMELQLIKKEITGIGPSTTTETETIAKYEIMD 239
Query: 238 GAPVRGESIPIRLFLSPYELTPTHRNINNKFSVKYYLNLVLVDEEDRRYFKQQEITIYR 296
           GAPV+GESIPIRLFL+ Y+ TPT R++N KFSV+Y+LNLVLVDEEDRRYFKQQEI ++R
Sbjct: 240 GAPVKGESIPIRLFLAGYDPTPTMRDVNKKFSVRYFLNLVLVDEEDRRYFKQQEIILWR 298
>pdb|3LH8|A Chain A, Crystal Structure Of Mouse Vps26b In Spacegroup P41 21 2 Length = 340 Back     alignment and structure
>pdb|3LHA|A Chain A, Crystal Structure Of Mouse Vps26b(R240sG241AE242S) IN SPACEGROUP P41 21 2 Length = 340 Back     alignment and structure
>pdb|2R51|A Chain A, Crystal Structure Of Mouse Vps26b Length = 340 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query301
2fau_A341 Vacuolar protein sorting 26; arrestin, retromer, p 1e-130
2r51_A340 Vacuolar protein sorting-associated protein 26B; r 1e-124
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 6e-04
>2fau_A Vacuolar protein sorting 26; arrestin, retromer, protein transport; HET: CAF; 2.10A {Homo sapiens} Length = 341 Back     alignment and structure
 Score =  372 bits (955), Expect = e-130
 Identities = 170/297 (57%), Positives = 225/297 (75%), Gaps = 2/297 (0%)

Query: 1   MNYLIGAFKPACNISITFADGKNRKQVPLKKENGQTIMVPLFQSQENISGKISIE-PVLG 59
           M++L G F P   I I   DG+ RK   +K E+G+     LF   E++SGK+++     G
Sbjct: 3   MSFLGGFFGPIXEIDIVLNDGETRKMAEMKTEDGKVEKHYLFYDGESVSGKVNLAFKQPG 62

Query: 60  KKVEHNGVKIELLGQIEMYFDRGNFYDFTSLVRELDVPGEIYERKTYPFEFSTVEMPYET 119
           K++EH G++IE +GQIE++ D+ N ++F +LV+EL +PGE+ + ++Y FEF  VE PYE+
Sbjct: 63  KRLEHQGIRIEFVGQIELFNDKSNTHEFVNLVKELALPGELTQSRSYDFEFMQVEKPYES 122

Query: 120 YNGVNVRLRYVLKVTVSRGYGGSVVEYQDFVVRNYTPPPSINNSIKMEVGIEDCLHIEFE 179
           Y G NVRLRY LKVT+ R     +V+  D +V      P +NNSIKMEVGIED LHIEFE
Sbjct: 123 YIGANVRLRYFLKVTIVRRLT-DLVKEYDLIVHQLATYPDVNNSIKMEVGIEDXLHIEFE 181

Query: 180 YNKSKYHLKDVIIGKIYFLLVRIKIKNMDLEIRRRESTGSGANTHVETETLAKFELMDGA 239
           YNKSKYHLKDVI+GKIYFLLVRIKI++M+L++ ++E TG G +T  ETET+AK+E+MDGA
Sbjct: 182 YNKSKYHLKDVIVGKIYFLLVRIKIQHMELQLIKKEITGIGPSTTTETETIAKYEIMDGA 241

Query: 240 PVRGESIPIRLFLSPYELTPTHRNINNKFSVKYYLNLVLVDEEDRRYFKQQEITIYR 296
           PV+GESIPIRLFL+ Y+ TPT R++N KFSV+Y+LNLVLVDEEDRRYFKQQEI ++R
Sbjct: 242 PVKGESIPIRLFLAGYDPTPTMRDVNKKFSVRYFLNLVLVDEEDRRYFKQQEIILWR 298
>2r51_A Vacuolar protein sorting-associated protein 26B; retromer, fibronectin III, arrestin domain, membrane, phosphorylation, protein transport; 2.10A {Mus musculus} PDB: 3lh9_A 3lh8_A 3lha_A Length = 340 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query301
2fau_A341 Vacuolar protein sorting 26; arrestin, retromer, p 100.0
2r51_A340 Vacuolar protein sorting-associated protein 26B; r 100.0
1g4m_A393 Beta-arrestin1; sensory transduction, alternative 99.88
1suj_A392 CONE arrestin; sensory transduction, signaling pro 99.83
3ugu_A380 S-arrestin; arrestin fold, signal termination, GPC 99.58
2r51_A340 Vacuolar protein sorting-associated protein 26B; r 97.44
1g4m_A393 Beta-arrestin1; sensory transduction, alternative 97.43
2fau_A341 Vacuolar protein sorting 26; arrestin, retromer, p 97.4
1suj_A392 CONE arrestin; sensory transduction, signaling pro 97.25
3hrz_A 627 Cobra venom factor; serine protease, glycosilated, 94.43
3ugu_A380 S-arrestin; arrestin fold, signal termination, GPC 93.54
2p9r_A102 Alpha-2-M, alpha-2-macroglobulin; human alpha2-mac 92.09
2hr0_A 645 Complement C3 beta chain; complement component C3B 90.75
4fxk_A 656 Complement C4 beta chain; immune system, proteolyt 85.7
3prx_B 1642 Cobra venom factor; immune system, complement, imm 84.92
3cu7_A 1676 Complement C5; Mg domain, inflammation, anaphylato 84.8
>2fau_A Vacuolar protein sorting 26; arrestin, retromer, protein transport; HET: CAF; 2.10A {Homo sapiens} Back     alignment and structure
Probab=100.00  E-value=8.3e-89  Score=642.89  Aligned_cols=297  Identities=57%  Similarity=0.955  Sum_probs=279.2

Q ss_pred             CCcccC-CCCCceEEEEEecCCCCceeEEeecCCCceEEeeeecCCCcEEEEEEEEeC-CCcEEEEeEEEEEEEEEEEEE
Q 022181            1 MNYLIG-AFKPACNISITFADGKNRKQVPLKKENGQTIMVPLFQSQENISGKISIEPV-LGKKVEHNGVKIELLGQIEMY   78 (301)
Q Consensus         1 ~~~~~~-~~~~~~~i~i~l~~~~~~~~~~~~~~~~~~~~~~iY~~Ge~VsG~V~i~~~-~~k~~~h~gI~i~~~G~~e~~   78 (301)
                      ||| || |||++|+|+|.||++++|++++++.++|+++++|+|++||+|+|+|+|+++ +||+++|+||+|++.|+++++
T Consensus         3 ~~~-~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~vY~~GE~VsG~V~I~~~~~gk~l~h~GIki~~~G~~e~~   81 (341)
T 2fau_A            3 MSF-LGGFFGPIXEIDIVLNDGETRKMAEMKTEDGKVEKHYLFYDGESVSGKVNLAFKQPGKRLEHQGIRIEFVGQIELF   81 (341)
T ss_dssp             ------CTTTTTEEEEEEETTGGGSCEEEEECTTSCEEEEEEECTTCCEEEEEEEEESSSSCCEEESCEEEEEEEEEEEC
T ss_pred             cch-hhhhcCCCceEEEEECCCCccceEEeecCCCceeccCcCCCCCEEEEEEEEEECCCCCeeeEEEEEEEEEEEEEEE
Confidence            555 46 468999999999999999999999999999999999999999999999997 689999999999999999999


Q ss_pred             EcCCCeEEEEEeEEEecCCcccCCCce-EEEEEeCCCCCCCeeEEeeeEEEEEEEEEEEecCCCCceEEEEEEEEeCCCC
Q 022181           79 FDRGNFYDFTSLVRELDVPGEIYERKT-YPFEFSTVEMPYETYNGVNVRLRYVLKVTVSRGYGGSVVEYQDFVVRNYTPP  157 (301)
Q Consensus        79 ~~~~~~~~~~~~~~~l~~~G~L~~g~~-~pF~F~l~~~~~eSy~G~~~~irY~vkv~i~R~~~~~~~~~~eF~V~~~~~~  157 (301)
                      |+++++++|++.+.+|+++|+|++| | |||+|++|+++||||+|+||+|||+|||+|+|||+ |++++++|||++.++.
T Consensus        82 ~~~~~~~~fls~~~eL~~~G~L~~g-~~fpF~F~~~~~~~eSy~G~~~~IrY~vrv~i~R~~~-di~~~~eF~V~~~~~~  159 (341)
T 2fau_A           82 NDKSNTHEFVNLVKELALPGELTQS-RSYDFEFMQVEKPYESYIGANVRLRYFLKVTIVRRLT-DLVKEYDLIVHQLATY  159 (341)
T ss_dssp             STTCCEEEEEEEEEEEECSEEECSC-EEEEEEECSCCCCSCCEECSSEEEEEEEEEEECCSSS-CEEEEEEEEECCCBCC
T ss_pred             ecCCCcEEEEEEEEEEcCCCccCCC-cEEeeEeCCCCCCCcceEeeEEEEEEEEEEEEEecCc-ceeEEEEEEEEeCCCC
Confidence            9999999999999999999999999 7 99999999999999999999999999999999998 9999999999999888


Q ss_pred             CCCCCCceeeecccceeEEEEEEeeeeEEcCCcEEEEEEEEEeeeeeeEEEEEEEEEEEecCCCceeEEeeEEEEEEEEe
Q 022181          158 PSINNSIKMEVGIEDCLHIEFEYNKSKYHLKDVIIGKIYFLLVRIKIKNMDLEIRRRESTGSGANTHVETETLAKFELMD  237 (301)
Q Consensus       158 p~~~~pi~~ev~i~~~L~i~f~~~k~~y~l~d~i~G~i~f~~s~~~Ik~iel~LiR~Et~~~~~~~~~e~~~i~~~qi~d  237 (301)
                      |+.+.|++||++++|||||+|++++++|+++|+|+|+|+|++|+++|++||++|+|+|+|++++++.+|+++|+++||||
T Consensus       160 p~~~~pi~~evgied~L~ieF~~~ks~y~l~d~I~G~I~f~~s~i~Ik~iel~LiR~Et~~~~~~~~~e~~~i~k~eImD  239 (341)
T 2fau_A          160 PDVNNSIKMEVGIEDXLHIEFEYNKSKYHLKDVIVGKIYFLLVRIKIQHMELQLIKKEITGIGPSTTTETETIAKYEIMD  239 (341)
T ss_dssp             CCCCCCEEEEEEETTTEEEEEEESCSEEETTCEEEEEEEEEEECSCEEEEEEEEEEEEEESCGGGCEEEEEEEEEEECCC
T ss_pred             CCCCCCeEEEEeccccEEEEEEEccccccCCCeEEEEEEEEEeccceEEEEEEEEEEEEEcCCCCeeeEEEEEEEEEEeC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCCCceeeEEEeeCCCcCCCccccccceEEEEEEEEEEEEECCCcEEEEeeEEEEEEecCC
Q 022181          238 GAPVRGESIPIRLFLSPYELTPTHRNINNKFSVKYYLNLVLVDEEDRRYFKQQEITIYRLQEN  300 (301)
Q Consensus       238 G~~~rg~~IPirl~l~~~~ltPt~~~~~~~fsV~y~lnlvli~~~~~~y~k~~~I~L~R~~~~  300 (301)
                      |+|+||++|||||+|+++.+|||+.++|++|||+|+|||+++|++|||||||+||+|||+.+.
T Consensus       240 G~p~rge~IPirl~Lp~~~l~PT~~~~~~~fsV~Y~Lnlvlvde~~rryfk~~EI~L~R~~~~  302 (341)
T 2fau_A          240 GAPVKGESIPIRLFLAGYDPTPTMRDVNKKFSVRYFLNLVLVDEEDRRYFKQQEIILWRKAPE  302 (341)
T ss_dssp             C------CEEEEEESTTTCCCCCEEEEETTEEEEEEEEEEEEETTCCEEEEEEEEEEECBCC-
T ss_pred             CCccCCCEEEEEEEcCCCCCCCcchhcCCeEEEEEEEEEEEEeCCCCeeeeeeEEEEEECCCc
Confidence            999999999999999999999999999999999999999999999999999999999999864
>2r51_A Vacuolar protein sorting-associated protein 26B; retromer, fibronectin III, arrestin domain, membrane, phosphorylation, protein transport; 2.10A {Mus musculus} PDB: 3lh9_A 3lh8_A 3lha_A Back     alignment and structure
>1g4m_A Beta-arrestin1; sensory transduction, alternative splicing, signaling protein; 1.90A {Bos taurus} SCOP: b.1.18.11 b.1.18.11 PDB: 1g4r_A 3gd1_C 1jsy_A 1zsh_A* 2wtr_A 2wtr_B 3gc3_A 3p2d_A Back     alignment and structure
>1suj_A CONE arrestin; sensory transduction, signaling protein; 2.38A {Ambystoma tigrinum} Back     alignment and structure
>3ugu_A S-arrestin; arrestin fold, signal termination, GPCR, outer segment, SIGN protein; 1.85A {Bos taurus} PDB: 3ugx_A 1cf1_A 1ayr_A Back     alignment and structure
>2r51_A Vacuolar protein sorting-associated protein 26B; retromer, fibronectin III, arrestin domain, membrane, phosphorylation, protein transport; 2.10A {Mus musculus} PDB: 3lh9_A 3lh8_A 3lha_A Back     alignment and structure
>1g4m_A Beta-arrestin1; sensory transduction, alternative splicing, signaling protein; 1.90A {Bos taurus} SCOP: b.1.18.11 b.1.18.11 PDB: 1g4r_A 3gd1_C 1jsy_A 1zsh_A* 2wtr_A 2wtr_B 3gc3_A 3p2d_A Back     alignment and structure
>2fau_A Vacuolar protein sorting 26; arrestin, retromer, protein transport; HET: CAF; 2.10A {Homo sapiens} Back     alignment and structure
>1suj_A CONE arrestin; sensory transduction, signaling protein; 2.38A {Ambystoma tigrinum} Back     alignment and structure
>3hrz_A Cobra venom factor; serine protease, glycosilated, multi-domain, complement SYST convertase, complement alternate pathway; HET: NAG P6G; 2.20A {Naja kaouthia} PDB: 3frp_A* 3hs0_A* Back     alignment and structure
>3ugu_A S-arrestin; arrestin fold, signal termination, GPCR, outer segment, SIGN protein; 1.85A {Bos taurus} PDB: 3ugx_A 1cf1_A 1ayr_A Back     alignment and structure
>2p9r_A Alpha-2-M, alpha-2-macroglobulin; human alpha2-macroglobulin, Mg2 domain, X-RAY, signaling protein; 2.30A {Homo sapiens} Back     alignment and structure
>2hr0_A Complement C3 beta chain; complement component C3B, immune system; HET: THC; 2.26A {Homo sapiens} PDB: 2i07_A* 2wii_A* 2win_A* 2xwj_A* 3l3o_A* 3l5n_A* 3nms_A* 3nsa_A* 3ohx_A* 3t4a_A 2a74_A* 2a73_A* 2qki_A* 3g6j_A 2ice_A* 2icf_A* 2xwb_A* Back     alignment and structure
>4fxk_A Complement C4 beta chain; immune system, proteolytic cascade; HET: NAG BMA; 3.60A {Homo sapiens} PDB: 4fxg_A* Back     alignment and structure
>3prx_B Cobra venom factor; immune system, complement, immune SYS complex; HET: NAG; 4.30A {Naja kaouthia} PDB: 3pvm_B* Back     alignment and structure
>3cu7_A Complement C5; Mg domain, inflammation, anaphylatoxin, cleavage of basic residues, complement alternate pathway, glycoprotein, immune response; HET: NAG; 3.10A {Homo sapiens} PDB: 3kls_A* 3km9_A* 4e0s_A* 3prx_A* 3pvm_A* 4a5w_A* 1xwe_A Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query301
d1g4ma2218 Arrestin {Cow (Bos taurus), beta-arrestin 1 [TaxId 98.26
d1cf1a2211 Arrestin {Cow (Bos taurus), visual arrestin [TaxId 98.11
d1g4ma2218 Arrestin {Cow (Bos taurus), beta-arrestin 1 [TaxId 96.68
d1cf1a2211 Arrestin {Cow (Bos taurus), visual arrestin [TaxId 96.54
d1cf1a1173 Arrestin {Cow (Bos taurus), visual arrestin [TaxId 91.02
d1g4ma1171 Arrestin {Cow (Bos taurus), beta-arrestin 1 [TaxId 90.36
>d1g4ma2 b.1.18.11 (A:176-393) Arrestin {Cow (Bos taurus), beta-arrestin 1 [TaxId: 9913]} Back     information, alignment and structure
class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: E set domains
family: Arrestin/Vps26-like
domain: Arrestin
species: Cow (Bos taurus), beta-arrestin 1 [TaxId: 9913]

Probab=98.26  E-value=2.3e-05  Score=67.14  Aligned_cols=125  Identities=15%  Similarity=0.059  Sum_probs=86.3

Q ss_pred             ccceeEEEEEEeeeeEEcCCcEEEEEEE-EEeeeeeeEEEEEEEEEEEecCCCceeEEeeEEEEEEEEeCCCCCCce---
Q 022181          170 IEDCLHIEFEYNKSKYHLKDVIIGKIYF-LLVRIKIKNMDLEIRRRESTGSGANTHVETETLAKFELMDGAPVRGES---  245 (301)
Q Consensus       170 i~~~L~i~f~~~k~~y~l~d~i~G~i~f-~~s~~~Ik~iel~LiR~Et~~~~~~~~~e~~~i~~~qi~dG~~~rg~~---  245 (301)
                      -+++|++++.+++++|.+||.|.-.+.+ |.|+..|+.|.+.|+|..++.+.. ..+...++...+-.++. ..|.+   
T Consensus        18 ~sg~~~l~~~l~~~~y~~Ge~I~v~v~i~N~s~~~v~~i~~~l~q~~~~~~~~-~~~~~~~v~~~~~~~~~-~~~st~~k   95 (218)
T d1g4ma2          18 SDKPLHLEASLDKEIYYHGEPISVNVHVTNNTNKTVKKIKISVRQYADICLFN-TAQYKCPVAMEEADDTV-APSSTFCK   95 (218)
T ss_dssp             SSSCEEEEEEESCSEEETTCCEEEEEEEEECSSCCEEEEEEEEEEEEEECSSB-CEEEEEEEEEEEECCCB-CTTEEEEE
T ss_pred             eCCcEEEEEEECCCeEcCCCEEEEEEEEECCCCCEEeeEEEEEEEEEEEEEec-CCcEEEEEEEEeecccc-CCCcceEe
Confidence            3578999999999999999999988888 577889999999999999996542 23344444444434432 22222   


Q ss_pred             ------------------eeE------EEeeCCCcCCCccccccceEEEEEEEEEEEEECCCcE--------EEEeeEEE
Q 022181          246 ------------------IPI------RLFLSPYELTPTHRNINNKFSVKYYLNLVLVDEEDRR--------YFKQQEIT  293 (301)
Q Consensus       246 ------------------IPi------rl~l~~~~ltPt~~~~~~~fsV~y~lnlvli~~~~~~--------y~k~~~I~  293 (301)
                                        +|=      ...+..+.++|+....|..+.|+|+|.+.+.-..+..        .--..|++
T Consensus        96 ~~~l~~~~~~n~~~~~ial~~~~~~~~~~l~~~p~~~~~~~~~~~~I~V~Y~lkV~~~v~~~~~~~~~~~~~v~~~lP~~  175 (218)
T d1g4ma2          96 VYTLTPFLANNREKRGLALDGKLKHEDTNLASSTLLREGANREILGIIVSYKVKVKLVVSRGGLLGDLASSDVAVELPFT  175 (218)
T ss_dssp             EEEECCCGGGTTTCSSEEESSCTTSTTCCBCCCCCCCTTCCSGGGSEEEEEEEEEEEEECCC--------CEEEEEEEEE
T ss_pred             EEEecccccccceeeeEecCcccceeeccccccccCCCCccccceeEEEEEEEEEEEEecCCcccCceecCceEEEECce
Confidence                              110      1223445677777678899999999999997766543        33466777


Q ss_pred             EEE
Q 022181          294 IYR  296 (301)
Q Consensus       294 L~R  296 (301)
                      |..
T Consensus       176 l~~  178 (218)
T d1g4ma2         176 LMH  178 (218)
T ss_dssp             EEC
T ss_pred             ecC
Confidence            653
>d1cf1a2 b.1.18.11 (A:183-393) Arrestin {Cow (Bos taurus), visual arrestin [TaxId: 9913]} Back     information, alignment and structure
>d1g4ma2 b.1.18.11 (A:176-393) Arrestin {Cow (Bos taurus), beta-arrestin 1 [TaxId: 9913]} Back     information, alignment and structure
>d1cf1a2 b.1.18.11 (A:183-393) Arrestin {Cow (Bos taurus), visual arrestin [TaxId: 9913]} Back     information, alignment and structure
>d1cf1a1 b.1.18.11 (A:10-182) Arrestin {Cow (Bos taurus), visual arrestin [TaxId: 9913]} Back     information, alignment and structure
>d1g4ma1 b.1.18.11 (A:5-175) Arrestin {Cow (Bos taurus), beta-arrestin 1 [TaxId: 9913]} Back     information, alignment and structure