Citrus Sinensis ID: 022215

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-
Protein Sequence
MARNEEKAQSMLNRYIALQAEEKKKPKERRPYLASECRDLSEADKWRQQIMREIGRKVAEIQNEGLGEHRLRDLNDEINKLIREKGHWERRIFELGGPNYTKHFAKMTDLEGNIVDVPNPSGRGPGYRYFGAAKKLPGVRELFEKPPELRKRRTRYDIYKRIDASYYGYRDDEDGVLERVEGPAEREMRAKAVQEWRRLDEIKKEAMKTVKSGEEASVMGQVNEILKEGEEDVVLEERMREMEIERKEKEREFVVHVPLPDDKEIEKMVIERKKMELLKKYATEEFVEEQNEAKAMLNIQR
Secondary Structure (PSIPRED)
ccccHHHHHHHHHHHHHHHHHHHccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccEEEcccccccHHHHHcccccHHccccHHHHHHcccccccccccccccccHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHcccccccccccHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHcccc
Secondary Structure Prediction (SSPRO)
ccccHHHHHHHHHHHHHHHHHHcccccccccccHHHcccHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHccccccccccccEEccccccccccccEHccHHHccccHHHHHcccccccccccHHHHHHHccHHHccccccccccEcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHccccHHHHHccHHHHHcccccccHHccccccccEEEEEcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccc
Coil and Loop (DISEMBL)
MARNEEKAQSMLNRYIALQAEEkkkpkerrpylasecRDLSEADKWRQQIMREIGRKVAEIQNEGLGEHRLRDLNDEINKLIREKGHWERRIfelggpnytkhfakmtdlegnivdvpnpsgrgpgyryfgaakklpgvrelfekppelrkrrtrydiykridasyygyrddedgvlervegpaEREMRAKAVQEWRRLDEIKKEAMKTVKSGEEASVMGQVNEILKEGEEDVVLEERMREMEIERKEKEREFVvhvplpddkeIEKMVIERKKMELLKKYATEEFVEEQNEAKAMLNIQR
Flexible Loop (DISEMBL)
MARNEEKAQSMLNRYIALqaeekkkpkerrpylasecrdlseadkWRQQIMREIGRKVAEIqneglgehrlrdlNDEINKLIrekghwerrifelggpnYTKHFAKMTDLEGNIVDVPNPSGRGPGYRYFGaakklpgvrelfekppelrkrrtrydiykridasyygyrddedgvlervegpaeremrAKAVQEWRRLDEIKKEAmktvksgeeasvmgqvneilkegeedvvlEERMREMEierkekerefvvhvplpddkeiekMVIERKKMELLKKYATEEFVEEQNEAKAMLNIQR
Low Complexity Region (SEG)
MARNEEKAQSMLNRYIALQAeekkkpkerrpYLASECRDLSEADKWRQQIMREIGRKVAEIQNEGLGEHRLRDLNDEINKLIREKGHWERRIFELGGPNYTKHFAKMTDLEGNIVDVPNPSGRGPGYRYFGAAKKLPGVRELFEKPPELRKRRTRYDIYKRIDASYYGYRDDEDGVLERVEGPAEREMRAKAVQEWRRLDEIKKEAMKTVKSGEEASVMGQVNEILKEGeedvvleermremeierkekerefvvHVPLPDDKEIEKMVIERKKMELLKKYATEEFVEEQNEAKAMLNIQR
Disordered region (IsUnstruct)
*********************************************WRQQIMREIGRKVAEIQNEGLGEHRLRDLNDEINKLIREKGHWERRIFELGGPNYTKHFAKMTDLEGNIVDVPN***RGPGYRYFGAAKKLPGVRELFE*****RKRRTRYDIYKRIDASYYGYRDDE********************************************************************************VVHV***********VI******LL***********************
Disordered Region (DISOPRED)
*AR*EEKAQSMLNRYI*****************ASECRDLSEADKWRQQIMREIGRKVAEIQNEGLGEHRLRDLNDEINKLIREKGHWERRIFELGGPNYT*************VDVPNPSGRGPGYRYFGAAKKLPGVR*********************IDASYYGYRDDEDGVLERVEGPAE*********************************************************************VHVPLPDDKEIEKMVIERKKMELLKK**************AMLNI**
Disordered Region (DISEMBL)
*********SMLNRYIALQAEE**********LASECRDLSEADKWRQQIMREIGRKVAEIQNEGLGEHRLRDLNDEINKLIREKGHWERRIFELGGPNYTKHFAKMTDLEGNIVDVPNPSGRGPGYRYFGAAKKLPGVRELFEKPPELRKRRTRYDIYKRIDASYYGYRDDEDGVLERVEGPAEREMRAKAVQEWRRLDEIKKEAMKTVKSGEEASVMGQVNEILKEGEEDVVLEERMREMEIERKEKEREFVVHVPLPDDKEIEKMVIERKKMELLKKYATEEFV**************
Disordered Region (DISPRO)
*************RYIALQAEE****KERRPYLASECRDLSEADKWRQQIMREIGRKVAEIQNEGLGEHRLRDLNDEINKLIREKGHWERRIFELGGPNYTKHFAKMTDLEGNIVDVPNPSGRGPGYRYFGAAKKLPGVRELFEKPPELRKRRTRYDIYKRIDASYYGYRDDEDGVLERVEGPAEREMRAKAVQEWRRLDEIKK*********************************************EREFVVHVPLPDDKEIEKMVIERKKMELLKKYATEEFVEEQNEA********
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
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Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
xxxxxxxxxxxxxxxxxxxxxEKKKPKERRPYLASECRDLSEADKWRQQIMREIGRKVAEIQNEGLGEHRxxxxxxxxxxxxxxxxxxxxxIFELGGPNYTKHFAKMTDLEGNIVDVPNPSGRGPGYRYFGAAKKLPGVRELFEKPPELRKRRTRYDIYKRIDASYYGYRDDEDGVLERVEGPAEREMRAKAVQEWRRLDEIKKEAMKTVKSGEEASVMGQVNEILKEGEExxxxxxxxxxxxxxxxxxxxxFVVHVPLPDDKEIEKMVIERKKMELLKKYATEEFVEEQNEAKAMLNIQR
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	301	2.2.26 [Sep-21-2011]
Q6AYB3	284	Pre-mRNA-splicing factor	yes	no	0.936	0.992	0.505	2e-64
Q69ZQ2	285	Pre-mRNA-splicing factor	yes	no	0.943	0.996	0.489	4e-64
Q9ULR0	285	Pre-mRNA-splicing factor	no	no	0.933	0.985	0.495	1e-63
Q54N41	299	Pre-mRNA-splicing factor	yes	no	0.634	0.638	0.547	2e-55
Q4PEZ0	351	Pre-mRNA-splicing factor	N/A	no	0.561	0.481	0.494	3e-39
P0CO36	348	Pre-mRNA-splicing factor	yes	no	0.558	0.482	0.456	1e-34
P0CO37	348	Pre-mRNA-splicing factor	N/A	no	0.558	0.482	0.456	1e-34
Q7SHY8	239	Pre-mRNA-splicing factor	N/A	no	0.561	0.707	0.467	1e-34
Q51LS1	246	Pre-mRNA-splicing factor	N/A	no	0.561	0.686	0.472	3e-34
Q5B423	256	Pre-mRNA-splicing factor	yes	no	0.558	0.656	0.439	1e-32

>sp|Q6AYB3|ISY1_RAT Pre-mRNA-splicing factor ISY1 homolog OS=Rattus norvegicus GN=Isy1 PE=2 SV=1

 Score =  245 bits (626), Expect = 2e-64,   Method: Compositional matrix adjust.
 Identities = 151/299 (50%), Positives = 198/299 (66%), Gaps = 17/299 (5%)

Query: 1   MARNEEKAQSMLNRYIALQAEEKKKPKERRPYLASECRDLSEADKWRQQIMREIGRKVAE 60
           MARN EKA + L R+   Q EE K  KERRP+LASEC +L +A+KWR+QI+ EI +KVA+
Sbjct: 1   MARNAEKAMTALARFRQAQLEEGKV-KERRPFLASECTELPKAEKWRRQIIGEISKKVAQ 59

Query: 61  IQNEGLGEHRLRDLNDEINKLIREKGHWERRIFELGGPNYTKHFAKMTDLEGNIVDVPNP 120
           IQN GLGE R+RDLNDEINKL+REKGHWE RI ELGGP+Y K   KM D EG  V    P
Sbjct: 60  IQNAGLGEFRIRDLNDEINKLLREKGHWEVRIKELGGPDYGKVGPKMLDHEGKEV----P 115

Query: 121 SGRGPGYRYFGAAKKLPGVRELFEKPPELRKRRTRYDIYKRIDASYYGYRDDEDGVLERV 180
             R  GY+YFGAAK LPGVRELFEK P    R+TR ++ K ID  YYGY D++DGV+  +
Sbjct: 116 GNR--GYKYFGAAKDLPGVRELFEKEPLPPPRKTRAELMKAIDFEYYGYLDEDDGVIVPL 173

Query: 181 EGPAEREMRAKAVQEWRRLDEIKKEAMKTVKSGEEASVMGQVN-EILKEGEEDVVLEERM 239
           E   E+ +RA+ V++W+     ++EA       EE     ++N   + E E D   EE  
Sbjct: 174 EQEYEKRLRAELVEKWK----AEREARLARGEKEEEEEEEEINIYAVTEEESD---EEGS 226

Query: 240 REMEIERKEKEREFVVHVPLPDDKEIEKMVIERKKMELLKKYATEEFVEEQNEAKAMLN 298
           +E   E  + +++F+ HVP+P  +EIE+ ++ RKKMELL+KYA+E    +  EAK +L 
Sbjct: 227 QEKAGE--DGQQKFIAHVPVPSQQEIEEALVRRKKMELLQKYASETLQAQSEEAKRLLG 283

May play a role in pre-mRNA splicing.
Rattus norvegicus (taxid: 10116)

>sp|Q69ZQ2|ISY1_MOUSE Pre-mRNA-splicing factor ISY1 homolog OS=Mus musculus GN=Isy1 PE=1 SV=2

 Score =  244 bits (624), Expect = 4e-64,   Method: Compositional matrix adjust.
 Identities = 146/298 (48%), Positives = 197/298 (66%), Gaps = 14/298 (4%)

Query: 1   MARNEEKAQSMLNRYIALQAEEKKKPKERRPYLASECRDLSEADKWRQQIMREIGRKVAE 60
           MARN EKA + L R+   Q EE K  KERRP+LASEC +L +A+KWR+QI+ EI +KVA+
Sbjct: 1   MARNAEKAMTALARFRQAQLEEGKV-KERRPFLASECTELPKAEKWRRQIIGEISKKVAQ 59

Query: 61  IQNEGLGEHRLRDLNDEINKLIREKGHWERRIFELGGPNYTKHFAKMTDLEGNIVDVPNP 120
           IQN GLGE R+RDLNDEINKL+REKGHWE RI ELGGP+Y K   KM D EG  V    P
Sbjct: 60  IQNAGLGEFRIRDLNDEINKLLREKGHWEVRIKELGGPDYGKVGPKMLDHEGKEV----P 115

Query: 121 SGRGPGYRYFGAAKKLPGVRELFEKPPELRKRRTRYDIYKRIDASYYGYRDDEDGVLERV 180
             R  GY+YFGAAK LPGVRELFEK P    R+TR ++ K ID  YYGY D++DGV+  +
Sbjct: 116 GNR--GYKYFGAAKDLPGVRELFEKEPLPPPRKTRAELMKAIDFEYYGYLDEDDGVIVPL 173

Query: 181 EGPAEREMRAKAVQEWRRLDEIKKEAMKTVKSGEEASVMGQVNEILKEGEEDVVLEERMR 240
           E   E+++RA+ V++W+   E +  A    +  EE      +  + +E  ++   +E+  
Sbjct: 174 EQEYEKKLRAELVEKWKAEREARL-ARGEKEEEEEEEEEINIYAVTEEESDEEGNQEKAG 232

Query: 241 EMEIERKEKEREFVVHVPLPDDKEIEKMVIERKKMELLKKYATEEFVEEQNEAKAMLN 298
           E      + +++F+ HVP+P  +EIE+ ++ RKKMELL+KYA+E    +  EAK +L 
Sbjct: 233 E------DGQQKFIAHVPVPSQQEIEEALVRRKKMELLQKYASETLQAQSEEAKRLLG 284

May play a role in pre-mRNA splicing.

Mus musculus (taxid: 10090)

>sp|Q9ULR0|ISY1_HUMAN Pre-mRNA-splicing factor ISY1 homolog OS=Homo sapiens GN=ISY1 PE=1 SV=3

 Score =  243 bits (621), Expect = 1e-63,   Method: Compositional matrix adjust.
 Identities = 149/301 (49%), Positives = 195/301 (64%), Gaps = 20/301 (6%)

Query: 1   MARNEEKAQSMLNRYIALQAEEKKKPKERRPYLASECRDLSEADKWRQQIMREIGRKVAE 60
           MARN EKA + L R+   Q EE K  KERRP+LASEC +L +A+KWR+QI+ EI +KVA+
Sbjct: 1   MARNAEKAMTALARFRQAQLEEGKV-KERRPFLASECTELPKAEKWRRQIIGEISKKVAQ 59

Query: 61  IQNEGLGEHRLRDLNDEINKLIREKGHWERRIFELGGPNYTKHFAKMTDLEGNIVDVPNP 120
           IQN GLGE R+RDLNDEINKL+REKGHWE RI ELGGP+Y K   KM D EG  V    P
Sbjct: 60  IQNAGLGEFRIRDLNDEINKLLREKGHWEVRIKELGGPDYGKVGPKMLDHEGKEV----P 115

Query: 121 SGRGPGYRYFGAAKKLPGVRELFEKPPELRKRRTRYDIYKRIDASYYGYRDDEDGVLERV 180
             R  GY+YFGAAK LPGVRELFEK P    R+TR ++ K ID  YYGY D++DGV+  +
Sbjct: 116 GNR--GYKYFGAAKDLPGVRELFEKEPLPPPRKTRAELMKAIDFEYYGYLDEDDGVIVPL 173

Query: 181 EGPAEREMRAKAVQEWRRLDEIKKEAMKTVKSGEEASVMGQVNEILKEGEEDVVLEERMR 240
           E   E+++RA+ V++W      K E    +  GE+     +  EI        V EE   
Sbjct: 174 EQEYEKKLRAELVEKW------KAEREARLARGEKEEEEEEEEEI----NIYAVTEEESD 223

Query: 241 EMEIERK---EKEREFVVHVPLPDDKEIEKMVIERKKMELLKKYATEEFVEEQNEAKAML 297
           E   + K   + +++F+ HVP+P  +EIE+ ++ RKKMELL+KYA+E    +  EA+ +L
Sbjct: 224 EEGSQEKGGDDSQQKFIAHVPVPSQQEIEEALVRRKKMELLQKYASETLQAQSEEARRLL 283

Query: 298 N 298
            
Sbjct: 284 G 284

May play a role in pre-mRNA splicing.

Homo sapiens (taxid: 9606)

>sp|Q54N41|ISY1_DICDI Pre-mRNA-splicing factor ISY1 homolog OS=Dictyostelium discoideum GN=isy1 PE=3 SV=1

 Score =  216 bits (550), Expect = 2e-55,   Method: Compositional matrix adjust.
 Identities = 110/201 (54%), Positives = 144/201 (71%), Gaps = 10/201 (4%)

Query: 1   MARNEEKAQSMLNRYIALQAEEKKKPKERRPYLASECRDLSEADKWRQQIMREIGRKVAE 60
           MARNEEKA+SMLNRY+ L+  E K+ +ERRPYL++EC  L +A+KWR+QI++EI R + E
Sbjct: 1   MARNEEKAKSMLNRYLQLKGTESKQ-EERRPYLSNECDSLVDAEKWRRQILKEITRGITE 59

Query: 61  IQNEGLGEHRLRDLNDEINKLIREKGHWERRIFELGGPNYTKHFAKMTDLEGNIVDVPNP 120
           IQN  L E+++RDLND INKL+REKGHWERRI +LGGPN+     K+ D +G       P
Sbjct: 60  IQNSALDEYKIRDLNDHINKLVREKGHWERRILQLGGPNHRALAPKLFDADGK-----EP 114

Query: 121 SGRGPGYRYFGAAKKLPGVRELFEKPPEL---RKRRTRYDIYKRIDASYYGYRDDEDGVL 177
            G G  YRY+G AK LPGV ELFEKP +     +++TR D+YK ID+ YYGYRDDEDG L
Sbjct: 115 LGTGT-YRYYGEAKNLPGVAELFEKPEQTLHGTEKKTRQDLYKYIDSDYYGYRDDEDGKL 173

Query: 178 ERVEGPAEREMRAKAVQEWRR 198
           E +E   E+    + V+ W++
Sbjct: 174 EEIEREYEKYAIEQNVENWKK 194

May play a role in pre-mRNA splicing.

Dictyostelium discoideum (taxid: 44689)

>sp|Q4PEZ0|ISY1_USTMA Pre-mRNA-splicing factor ISY1 OS=Ustilago maydis (strain 521 / FGSC 9021) GN=ISY1 PE=3 SV=1

 Score =  162 bits (409), Expect = 3e-39,   Method: Compositional matrix adjust.
 Identities = 90/182 (49%), Positives = 118/182 (64%), Gaps = 13/182 (7%)

Query: 1   MARNEEKAQSMLNRYIALQAEE---KKKPKERRPYLASECRDLSEADKWRQQIMREIGRK 57
           MARN+EKAQSML R+   QA       KP  RRP LAS    L E ++WR  ++REI RK
Sbjct: 1   MARNQEKAQSMLYRFREAQATSLGVSTKPA-RRPRLASSVSSLKECERWRSDVIREISRK 59

Query: 58  VAEIQNEGLGEHRLRDLNDEINKLIREKGHWERRIFELGGPNYTKHFAKMTDLEGNIVDV 117
           V++IQ+ GL ++ +RDLNDEINKL+REKGHWE +I  LGG NY +    M   +  +V  
Sbjct: 60  VSKIQDFGLNDYEVRDLNDEINKLLREKGHWENQIVALGGANYKRGVPSMLGDDKGVV-- 117

Query: 118 PNPSGRGPGYRYFGAAKKLPGVRELF--EKPPELRKRRTRYDIYKRIDASYYGYRDDEDG 175
               GRG GY+YFG AK LPGV+ELF  +K  E  +   RY+ ++ +  SYYG  D++DG
Sbjct: 118 ----GRG-GYKYFGRAKDLPGVKELFTSQKADEAGRSEERYERFRNLPPSYYGDEDEDDG 172

Query: 176 VL 177
           +L
Sbjct: 173 LL 174

Involved in pre-mRNA splicing.

Ustilago maydis (strain 521 / FGSC 9021) (taxid: 237631)

>sp|P0CO36|ISY1_CRYNJ Pre-mRNA-splicing factor ISY1 OS=Cryptococcus neoformans var. neoformans serotype D (strain JEC21 / ATCC MYA-565) GN=ISY1 PE=3 SV=1

 Score =  147 bits (371), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 83/182 (45%), Positives = 113/182 (62%), Gaps = 14/182 (7%)

Query: 1   MARNEEKAQSMLNRYIALQAEE----KKKPKERRPYLASECRDLSEADKWRQQIMREIGR 56
           MARN EKAQSML R+   QA +     ++  +RRP +AS C  L EA++WR  I+R+I R
Sbjct: 1   MARNSEKAQSMLYRFREQQAIDMGIGTRQKGDRRPRMASSCTSLREAERWRGDILRDISR 60

Query: 57  KVAEIQNEGLGEHRLRDLNDEINKLIREKGHWERRIFELGGPNYTKHFAKMTDLEGNIVD 116
           KV++IQ+  L ++++RDLNDEIN+L REK  WE +I  LGG NY +    MTD EG  V 
Sbjct: 61  KVSKIQDVALTDYQVRDLNDEINQLFREKRAWENQIINLGGANYRRAAGVMTDDEGREV- 119

Query: 117 VPNPSGRGPGYRYFGAAKKLPGVRELF----EKPPELRKRRTRYDIYKRIDASYYGYRDD 172
              P  R  GY+YFG AK+LPGV+ELF    ++  E   R   + +++     YYG  D+
Sbjct: 120 ---PGTR--GYKYFGRAKELPGVKELFTRSTQQATEESARTASFQMFRHQGPDYYGDEDE 174

Query: 173 ED 174
            D
Sbjct: 175 LD 176

Involved in pre-mRNA splicing.

Cryptococcus neoformans var. neoformans serotype D (strain JEC21 / ATCC MYA-565) (taxid: 214684)

>sp|P0CO37|ISY1_CRYNB Pre-mRNA-splicing factor ISY1 OS=Cryptococcus neoformans var. neoformans serotype D (strain B-3501A) GN=ISY1 PE=3 SV=1

 Score =  147 bits (371), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 83/182 (45%), Positives = 113/182 (62%), Gaps = 14/182 (7%)

Query: 1   MARNEEKAQSMLNRYIALQAEE----KKKPKERRPYLASECRDLSEADKWRQQIMREIGR 56
           MARN EKAQSML R+   QA +     ++  +RRP +AS C  L EA++WR  I+R+I R
Sbjct: 1   MARNSEKAQSMLYRFREQQAIDMGIGTRQKGDRRPRMASSCTSLREAERWRGDILRDISR 60

Query: 57  KVAEIQNEGLGEHRLRDLNDEINKLIREKGHWERRIFELGGPNYTKHFAKMTDLEGNIVD 116
           KV++IQ+  L ++++RDLNDEIN+L REK  WE +I  LGG NY +    MTD EG  V 
Sbjct: 61  KVSKIQDVALTDYQVRDLNDEINQLFREKRAWENQIINLGGANYRRAAGVMTDDEGREV- 119

Query: 117 VPNPSGRGPGYRYFGAAKKLPGVRELF----EKPPELRKRRTRYDIYKRIDASYYGYRDD 172
              P  R  GY+YFG AK+LPGV+ELF    ++  E   R   + +++     YYG  D+
Sbjct: 120 ---PGTR--GYKYFGRAKELPGVKELFTRSTQQATEESARTASFQMFRHQGPDYYGDEDE 174

Query: 173 ED 174
            D
Sbjct: 175 LD 176

Involved in pre-mRNA splicing.

Cryptococcus neoformans var. neoformans serotype D (strain B-3501A) (taxid: 283643)

>sp|Q7SHY8|ISY1_NEUCR Pre-mRNA-splicing factor isy-1 OS=Neurospora crassa (strain ATCC 24698 / 74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC 987) GN=isy-1 PE=3 SV=1

 Score =  147 bits (370), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 85/182 (46%), Positives = 117/182 (64%), Gaps = 13/182 (7%)

Query: 1   MARNEEKAQSMLNRYIALQAEEK---KKPKERRPYLASECRDLSEADKWRQQIMREIGRK 57
           MARN EKAQSML R+   QA +       + RRP   +E   +   +KWR Q+++EI RK
Sbjct: 1   MARNSEKAQSMLFRFREAQAADLGIIDAGRTRRPRSITEQDSIPACEKWRGQVLKEISRK 60

Query: 58  VAEIQNEGLGEHRLRDLNDEINKLIREKGHWERRIFELGGPNYTKHFAKMTDLEGNIVDV 117
           V+ IQ+  L ++++RDLNDEINKL+REK  WE +I  LGGPNY +   K+ D  G   ++
Sbjct: 61  VSRIQDPALSDYQIRDLNDEINKLMREKHMWEVQIRNLGGPNYMRSGGKVYDEAGR--EI 118

Query: 118 PNPSGRGPGYRYFGAAKKLPGVRELFE-----KPPELRKRRTRYDIYKRIDASYYGYRDD 172
           P   G G GY+YFG A++LPGV+ELFE     K  + +   TR D+ K++DA+YYGY  D
Sbjct: 119 P---GGGRGYKYFGRARELPGVKELFEAAARAKQDDEKPLETRDDLRKQVDAAYYGYAPD 175

Query: 173 ED 174
           E+
Sbjct: 176 EE 177

Involved in pre-mRNA splicing.

Neurospora crassa (strain ATCC 24698 / 74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC 987) (taxid: 367110)

>sp|Q51LS1|ISY1_MAGO7 Pre-mRNA-splicing factor ISY1 OS=Magnaporthe oryzae (strain 70-15 / ATCC MYA-4617 / FGSC 8958) GN=ISY1 PE=3 SV=1

 Score =  145 bits (367), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 86/182 (47%), Positives = 115/182 (63%), Gaps = 13/182 (7%)

Query: 1   MARNEEKAQSMLNRYIALQAEEK---KKPKERRPYLASECRDLSEADKWRQQIMREIGRK 57
           MARN EKAQSML R+   QA +       + RRP   +E   +   +KWR Q++++I RK
Sbjct: 1   MARNSEKAQSMLFRFREAQAADLGIIDAGRTRRPRAITEQDSIPACEKWRGQVLKDISRK 60

Query: 58  VAEIQNEGLGEHRLRDLNDEINKLIREKGHWERRIFELGGPNYTKH-FAKMTDLEGNIVD 116
           V+ IQ   L ++++RDLNDEINKL+REK  WE +I  LGGPNYT+   AK+ D  G  + 
Sbjct: 61  VSRIQESSLSDYQIRDLNDEINKLMREKHMWEVQIRNLGGPNYTRAGGAKVYDEAGKEI- 119

Query: 117 VPNPSGRGPGYRYFGAAKKLPGVRELFE----KPPELRKRRTRYDIYKRIDASYYGYRDD 172
                G G GYRYFG AK+LPGV+ELFE    K  + +    R D+ K++DA+YYGY  D
Sbjct: 120 ----GGAGRGYRYFGRAKELPGVKELFEAARAKKGDEKPLEARDDLRKQVDAAYYGYSPD 175

Query: 173 ED 174
           E+
Sbjct: 176 EE 177

Involved in pre-mRNA splicing.

Magnaporthe oryzae (strain 70-15 / ATCC MYA-4617 / FGSC 8958) (taxid: 242507)

>sp|Q5B423|ISY1_EMENI Pre-mRNA-splicing factor isy1 OS=Emericella nidulans (strain FGSC A4 / ATCC 38163 / CBS 112.46 / NRRL 194 / M139) GN=isy1 PE=3 SV=1

 Score =  140 bits (352), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 87/198 (43%), Positives = 117/198 (59%), Gaps = 30/198 (15%)

Query: 1   MARNEEKAQSMLNRYIALQAEEK---KKPKERRPYLASECRDLSEADKWRQQIMREIGRK 57
           MARN EKAQSML R+ A QA +       + RRP   +    +   +KWR Q+++EI RK
Sbjct: 1   MARNSEKAQSMLFRFRAQQAADLGIIDIGRTRRPKAITSVDSIPACEKWRGQVLKEISRK 60

Query: 58  VAEIQNEGLGEHRLRDLNDEINKLIREKGHWERRIFELGGPNYTKHFAKMTDLEGNIVDV 117
           V+ IQ   L +H++RDLNDEINKL+REK  WE +I  +GGPNY +   ++ D EG   ++
Sbjct: 61  VSRIQEPSLSDHQIRDLNDEINKLMREKWAWEMQIRNMGGPNYMRGSGRVYDDEGR--EI 118

Query: 118 PNPSGRGPGYRYFGAAKKLPGVRELFEKPPELRKRRTR----------------YDI-YK 160
           P   G G GYRYFG A++LPGV+E+ E       RR R                 DI  K
Sbjct: 119 P---GGGKGYRYFGRARELPGVKEMLEAA----ARRGRGPAEEEEDDGKTVGRGGDIATK 171

Query: 161 RIDASYYGYR-DDEDGVL 177
           ++DA+Y+GY  D+EDG L
Sbjct: 172 KVDANYFGYGLDEEDGTL 189

Involved in pre-mRNA splicing.

Emericella nidulans (strain FGSC A4 / ATCC 38163 / CBS 112.46 / NRRL 194 / M139) (taxid: 227321)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	301
449436207	303	PREDICTED: pre-mRNA-splicing factor ISY1	1.0	0.993	0.808	1e-126
225431591	298	PREDICTED: pre-mRNA-splicing factor ISY1	0.990	1.0	0.820	1e-120
255559198	302	Pre-mRNA-splicing factor isy-1, putative	0.986	0.983	0.766	1e-119
357495005	303	Pre-mRNA-splicing factor ISY1-like prote	1.0	0.993	0.788	1e-119
296088612	262	unnamed protein product [Vitis vinifera]	0.870	1.0	0.757	1e-117
297830538	300	hypothetical protein ARALYDRAFT_479390 [	0.990	0.993	0.742	1e-114
356552159	299	PREDICTED: pre-mRNA-splicing factor ISY1	0.993	1.0	0.767	1e-113
356530715	299	PREDICTED: pre-mRNA-splicing factor ISY1	0.993	1.0	0.767	1e-113
15230193	300	pre-mRNA-splicing factor ISY1 [Arabidops	0.990	0.993	0.735	1e-113
226510490	311	LOC100282530 [Zea mays] gi|195623174|gb|	1.0	0.967	0.655	1e-109

>gi|449436207|ref|XP_004135885.1| PREDICTED: pre-mRNA-splicing factor ISY1 homolog [Cucumis sativus] gi|449491085|ref|XP_004158794.1| PREDICTED: pre-mRNA-splicing factor ISY1 homolog isoform 1 [Cucumis sativus] gi|449491087|ref|XP_004158795.1| PREDICTED: pre-mRNA-splicing factor ISY1 homolog isoform 2 [Cucumis sativus]

 Score =  456 bits (1174), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 245/303 (80%), Positives = 274/303 (90%), Gaps = 2/303 (0%)

Query: 1   MARNEEKAQSMLNRYIALQAEEKKKPKERRPYLASECRDLSEADKWRQQIMREIGRKVAE 60
           MARNEEKAQSMLNR+IAL+AEEKKKPKERRPYLASECRDL+EADKWRQQIMREIGRKVAE
Sbjct: 1   MARNEEKAQSMLNRFIALKAEEKKKPKERRPYLASECRDLAEADKWRQQIMREIGRKVAE 60

Query: 61  IQNEGLGEHRLRDLNDEINKLIREKGHWERRIFELGGPNYTKHFAKMTDLEGNIVDVPNP 120
           IQNEGLGEHRLRDLNDEINKLIREK HWERRI ELGGPNYTKH AKMTDL+GNIVDVPNP
Sbjct: 61  IQNEGLGEHRLRDLNDEINKLIREKSHWERRIIELGGPNYTKHSAKMTDLDGNIVDVPNP 120

Query: 121 SGRGPGYRYFGAAKKLPGVRELFEKPPELRKRRTRYDIYKRIDASYYGYRDDEDGVLERV 180
           SGRGPGYRYFGAAKKLPGVRELFEKPPELRKRRTRYDIYKRIDASYYGYRDDEDGVLERV
Sbjct: 121 SGRGPGYRYFGAAKKLPGVRELFEKPPELRKRRTRYDIYKRIDASYYGYRDDEDGVLERV 180

Query: 181 EGPAEREMRAKAVQEWRRLDEIKKEAMKTVKSGEEASVMGQVNEILKEGEEDVVLEERMR 240
           EGP+E  MRA+AV+EW+R++EI+KEA + VKSGE ASV+    + +   EE+ V+EE  +
Sbjct: 181 EGPSEERMRAEAVEEWQRMEEIRKEAKRAVKSGEVASVVNVAAKEVLFEEEEEVVEEERK 240

Query: 241 EMEIERK--EKEREFVVHVPLPDDKEIEKMVIERKKMELLKKYATEEFVEEQNEAKAMLN 298
                ++  +KEREFVVHVPLPD+KEIEKMV+E+KKMELL KYA++  +EEQ+EAK+MLN
Sbjct: 241 REREMKENLDKEREFVVHVPLPDEKEIEKMVLEKKKMELLSKYASDMLLEEQSEAKSMLN 300

Query: 299 IQR 301
           IQR
Sbjct: 301 IQR 303

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225431591|ref|XP_002282621.1| PREDICTED: pre-mRNA-splicing factor ISY1 homolog isoform 1 [Vitis vinifera] gi|359476953|ref|XP_003631919.1| PREDICTED: pre-mRNA-splicing factor ISY1 homolog isoform 2 [Vitis vinifera] gi|359476955|ref|XP_003631920.1| PREDICTED: pre-mRNA-splicing factor ISY1 homolog isoform 3 [Vitis vinifera] gi|147773415|emb|CAN60270.1| hypothetical protein VITISV_029395 [Vitis vinifera]

 Score =  437 bits (1123), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 247/301 (82%), Positives = 265/301 (88%), Gaps = 3/301 (0%)

Query: 1   MARNEEKAQSMLNRYIALQAEEKKKPKERRPYLASECRDLSEADKWRQQIMREIGRKVAE 60
           MARNEEKAQSMLNR+I L+ EEKKKPKERRPYLASECRDL+EADKWRQQIMREIGRKVAE
Sbjct: 1   MARNEEKAQSMLNRFITLKNEEKKKPKERRPYLASECRDLAEADKWRQQIMREIGRKVAE 60

Query: 61  IQNEGLGEHRLRDLNDEINKLIREKGHWERRIFELGGPNYTKHFAKMTDLEGNIVDVPNP 120
           IQNEGLGEHRLRDLNDEINKLIREK HWERRI ELGGPNYTKH AKMTDLEGNIVDVPNP
Sbjct: 61  IQNEGLGEHRLRDLNDEINKLIREKSHWERRIIELGGPNYTKHSAKMTDLEGNIVDVPNP 120

Query: 121 SGRGPGYRYFGAAKKLPGVRELFEKPPELRKRRTRYDIYKRIDASYYGYRDDEDGVLERV 180
           SGRGPGYRYFGAAKKLPGVRELFEKPPELRKR++RYDIYKRIDASYYGYRDDEDGVLE+V
Sbjct: 121 SGRGPGYRYFGAAKKLPGVRELFEKPPELRKRKSRYDIYKRIDASYYGYRDDEDGVLEKV 180

Query: 181 EGPAEREMRAKAVQEWRRLDEIKKEAMKTVKSGEEASVMGQVNEILKEGEEDVVLEERMR 240
           EGPAE  MRA  + EW  L+EIK+EA + VKSGE ASV      IL E EEDVV EER +
Sbjct: 181 EGPAEERMRAAKLAEWEALEEIKREARRAVKSGEVASVAPA--GILFEEEEDVVEEER-Q 237

Query: 241 EMEIERKEKEREFVVHVPLPDDKEIEKMVIERKKMELLKKYATEEFVEEQNEAKAMLNIQ 300
               +  EKEREFVVHVPLPD+KEIE+MV+E+KKMELL KY +E  +EEQ EAKAMLNIQ
Sbjct: 238 AAREKENEKEREFVVHVPLPDEKEIERMVVEKKKMELLSKYTSEGLLEEQTEAKAMLNIQ 297

Query: 301 R 301
           R
Sbjct: 298 R 298

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255559198|ref|XP_002520620.1| Pre-mRNA-splicing factor isy-1, putative [Ricinus communis] gi|223540181|gb|EEF41756.1| Pre-mRNA-splicing factor isy-1, putative [Ricinus communis]

 Score =  434 bits (1115), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 233/304 (76%), Positives = 260/304 (85%), Gaps = 7/304 (2%)

Query: 1   MARNEEKAQSMLNRYIALQAEEKKKPKERRPYLASECRDLSEADKWRQQIMREIGRKVAE 60
           MARNEEKAQSMLNR+IAL+ +EKKKPKERRP+LASECRDL+EAD+WRQQIMREIGRKVAE
Sbjct: 1   MARNEEKAQSMLNRFIALKEQEKKKPKERRPFLASECRDLAEADRWRQQIMREIGRKVAE 60

Query: 61  IQNEGLGEHRLRDLNDEINKLIREKGHWERRIFELGGPNYTKHFAKMTDLEGNIVDVPNP 120
           IQNEGLGEHRLRDLNDEINKLIREK HWERRI ELGGPNYT+H  KMTDLEGNI+DVPNP
Sbjct: 61  IQNEGLGEHRLRDLNDEINKLIREKSHWERRIIELGGPNYTRHAPKMTDLEGNIIDVPNP 120

Query: 121 SGRGPGYRYFGAAKKLPGVRELFEKPPELRKRRTRYDIYKRIDASYYGYRDDEDGVLERV 180
           SGRGPGYRYFGAAKKLPGV+ELFEKPPELRKRRTRYDIYKRIDASYYGYRDDEDGVLE+V
Sbjct: 121 SGRGPGYRYFGAAKKLPGVKELFEKPPELRKRRTRYDIYKRIDASYYGYRDDEDGVLEKV 180

Query: 181 EGPAEREMRAKAVQEWRRLDEIKKEAMKTVKSGEEASVMG----QVNEILKEGEEDVVLE 236
           E PAE +MRA AV+EWRR+DEI+KEA K  K   E   +G    +V    +E   +   +
Sbjct: 181 EVPAEEKMRAAAVEEWRRMDEIRKEARKGAK---EVVTVGAAAAEVLVEEEEDVVEEERQ 237

Query: 237 ERMREMEIERKEKEREFVVHVPLPDDKEIEKMVIERKKMELLKKYATEEFVEEQNEAKAM 296
                 E ER EK  EFVVHVPLPD+KEIE+MV+E+KKM+LL KYA+E  +EEQ+EAKAM
Sbjct: 238 IEREREEKERMEKMNEFVVHVPLPDEKEIERMVLEKKKMDLLSKYASEGLLEEQSEAKAM 297

Query: 297 LNIQ 300
           LNIQ
Sbjct: 298 LNIQ 301

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357495005|ref|XP_003617791.1| Pre-mRNA-splicing factor ISY1-like protein [Medicago truncatula] gi|355519126|gb|AET00750.1| Pre-mRNA-splicing factor ISY1-like protein [Medicago truncatula]

 Score =  433 bits (1113), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 239/303 (78%), Positives = 266/303 (87%), Gaps = 2/303 (0%)

Query: 1   MARNEEKAQSMLNRYIALQAEEKKKPKERRPYLASECRDLSEADKWRQQIMREIGRKVAE 60
           MARNEEKAQSMLNR+I ++AEEKKKPKERRP+LASECRDL+EADKWRQQIMREIGRKVAE
Sbjct: 1   MARNEEKAQSMLNRFITMKAEEKKKPKERRPFLASECRDLNEADKWRQQIMREIGRKVAE 60

Query: 61  IQNEGLGEHRLRDLNDEINKLIREKGHWERRIFELGGPNYTKHFAKMTDLEGNIVDVPNP 120
           IQNEGLGEHRLRDLNDEINKLIREK HWERRI ELGGPNY +H AKMTDL+GNIVDVPNP
Sbjct: 61  IQNEGLGEHRLRDLNDEINKLIREKSHWERRIVELGGPNYARHSAKMTDLDGNIVDVPNP 120

Query: 121 SGRGPGYRYFGAAKKLPGVRELFEKPPELRKRRTRYDIYKRIDASYYGYRDDEDGVLERV 180
           SGRGPGYRYFGAAKKLPGVRELFEKPPELRKRRTRYDIYKRI+A+YYGYRDDEDG+LERV
Sbjct: 121 SGRGPGYRYFGAAKKLPGVRELFEKPPELRKRRTRYDIYKRINAAYYGYRDDEDGILERV 180

Query: 181 EGPAEREMRAKAVQEWRRLDEIKKEAMKTVKSGEEASVMGQVNEILKEGEEDVVLEERMR 240
           E PAE  MR +AV+EW RLD I+KEA K V+SGE   V     EIL E EEDVV EERM+
Sbjct: 181 EAPAEECMRREAVEEWERLDRIRKEARKAVRSGEVVEVTAATREILHEEEEDVVEEERMK 240

Query: 241 EMEIERK--EKEREFVVHVPLPDDKEIEKMVIERKKMELLKKYATEEFVEEQNEAKAMLN 298
           E E+  +  EKEREFVVHVPLPD+KEIEKMV+++KK +LL +Y ++  +EEQ EAK +LN
Sbjct: 241 EREMRERLDEKEREFVVHVPLPDEKEIEKMVLQKKKADLLNRYVSDVLMEEQTEAKDLLN 300

Query: 299 IQR 301
           I R
Sbjct: 301 IHR 303

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|296088612|emb|CBI37603.3| unnamed protein product [Vitis vinifera]

 Score =  427 bits (1098), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 228/301 (75%), Positives = 244/301 (81%), Gaps = 39/301 (12%)

Query: 1   MARNEEKAQSMLNRYIALQAEEKKKPKERRPYLASECRDLSEADKWRQQIMREIGRKVAE 60
           MARNEEKAQSMLNR+I L+ EEKKKPKERRPYLASECRDL+EADKWRQQIMREIGRKVAE
Sbjct: 1   MARNEEKAQSMLNRFITLKNEEKKKPKERRPYLASECRDLAEADKWRQQIMREIGRKVAE 60

Query: 61  IQNEGLGEHRLRDLNDEINKLIREKGHWERRIFELGGPNYTKHFAKMTDLEGNIVDVPNP 120
           IQNEGLGEHRLRDLNDEINKLIREK HWERRI ELGGPNYTKH AKMTDLEGNIVDVPNP
Sbjct: 61  IQNEGLGEHRLRDLNDEINKLIREKSHWERRIIELGGPNYTKHSAKMTDLEGNIVDVPNP 120

Query: 121 SGRGPGYRYFGAAKKLPGVRELFEKPPELRKRRTRYDIYKRIDASYYGYRDDEDGVLERV 180
           SGRGPGYRYFGAAKKLPGVRELFEKPPELRKR++RYDIYKRIDASYYGYRDDEDGVLE+V
Sbjct: 121 SGRGPGYRYFGAAKKLPGVRELFEKPPELRKRKSRYDIYKRIDASYYGYRDDEDGVLEKV 180

Query: 181 EGPAEREMRAKAVQEWRRLDEIKKEAMKTVKSGEEASVMGQVNEILKEGEEDVVLEERMR 240
           EGPAE  MRA  + EW  L+EIK+EA                                  
Sbjct: 181 EGPAEERMRAAKLAEWEALEEIKREA---------------------------------- 206

Query: 241 EMEIERKEKEREFVVHVPLPDDKEIEKMVIERKKMELLKKYATEEFVEEQNEAKAMLNIQ 300
                R+ KEREFVVHVPLPD+KEIE+MV+E+KKMELL KY +E  +EEQ EAKAMLNIQ
Sbjct: 207 -----RRAKEREFVVHVPLPDEKEIERMVVEKKKMELLSKYTSEGLLEEQTEAKAMLNIQ 261

Query: 301 R 301
           R
Sbjct: 262 R 262

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297830538|ref|XP_002883151.1| hypothetical protein ARALYDRAFT_479390 [Arabidopsis lyrata subsp. lyrata] gi|297328991|gb|EFH59410.1| hypothetical protein ARALYDRAFT_479390 [Arabidopsis lyrata subsp. lyrata]

 Score =  416 bits (1070), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 225/303 (74%), Positives = 255/303 (84%), Gaps = 5/303 (1%)

Query: 1   MARNEEKAQSMLNRYIALQAEEKKKPKERRPYLASECRDLSEADKWRQQIMREIGRKVAE 60
           MARNEEKAQSMLNR+I  +  EKKKPKERRP+LASECRDLSEADKWRQQI+REIG KVAE
Sbjct: 1   MARNEEKAQSMLNRFITQKEAEKKKPKERRPFLASECRDLSEADKWRQQILREIGSKVAE 60

Query: 61  IQNEGLGEHRLRDLNDEINKLIREKGHWERRIFELGGPNYTKHFAKMTDLEGNIVDVPNP 120
           IQNEGLGEHRLRDLNDEINKL+RE+ HWERRI ELGGPNY+KH AKMTDLEGNI+DVPNP
Sbjct: 61  IQNEGLGEHRLRDLNDEINKLLRERYHWERRIVELGGPNYSKHSAKMTDLEGNIIDVPNP 120

Query: 121 SGRGPGYRYFGAAKKLPGVRELFEKPPELRKRRTRYDIYKRIDASYYGYRDDEDGVLERV 180
           SGRGPGYRYFGAAKKLPGVRELFEKPPELRKR+TRYDIYKRIDASYYGYRDDEDG+LE++
Sbjct: 121 SGRGPGYRYFGAAKKLPGVRELFEKPPELRKRKTRYDIYKRIDASYYGYRDDEDGILEKL 180

Query: 181 EGPAEREMRAKAVQEWRRLDEIKKEAMKTVKSGEEASVMGQVNEILK--EGEEDVVLEER 238
           E  AE  MR ++V+EWRRLDE++KEA    K   E   +G      +    EE+  + E 
Sbjct: 181 ERNAEGVMRKRSVEEWRRLDEVRKEAR---KGASEVVSVGAAAAAAREVLFEEEEDVVEE 237

Query: 239 MREMEIERKEKEREFVVHVPLPDDKEIEKMVIERKKMELLKKYATEEFVEEQNEAKAMLN 298
            R      +EKEREFVVHVPLPD+KEIEKMV+E+KKM+LL KYA+E+ VE+Q EAK+MLN
Sbjct: 238 ERMEREREEEKEREFVVHVPLPDEKEIEKMVLEKKKMDLLSKYASEDLVEQQTEAKSMLN 297

Query: 299 IQR 301
           I R
Sbjct: 298 IHR 300

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356552159|ref|XP_003544437.1| PREDICTED: pre-mRNA-splicing factor ISY1 homolog [Glycine max]

 Score =  414 bits (1063), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 231/301 (76%), Positives = 258/301 (85%), Gaps = 2/301 (0%)

Query: 1   MARNEEKAQSMLNRYIALQAEEKKKPKERRPYLASECRDLSEADKWRQQIMREIGRKVAE 60
           MARNEEKAQSMLNR+I ++AEEKKKPKERRP+LASECRDLSEADKWRQQIMREIGRKVAE
Sbjct: 1   MARNEEKAQSMLNRFITMKAEEKKKPKERRPFLASECRDLSEADKWRQQIMREIGRKVAE 60

Query: 61  IQNEGLGEHRLRDLNDEINKLIREKGHWERRIFELGGPNYTKHFAKMTDLEGNIVDVPNP 120
           IQNEGLGEHRLRDLNDEINKLIREK HWERRI ELGGPNY+KH AKMTDL+GNIVDVPNP
Sbjct: 61  IQNEGLGEHRLRDLNDEINKLIREKSHWERRIVELGGPNYSKHSAKMTDLDGNIVDVPNP 120

Query: 121 SGRGPGYRYFGAAKKLPGVRELFEKPPELRKRRTRYDIYKRIDASYYGYRDDEDGVLERV 180
            GRGPGYRYFGAAKKLPGV+ELFEKPPELR+RRTRYDIYKRIDASYYGYRD+EDGVL R+
Sbjct: 121 GGRGPGYRYFGAAKKLPGVKELFEKPPELRRRRTRYDIYKRIDASYYGYRDEEDGVLARL 180

Query: 181 EGPAEREMRAKAVQEWRRLDEIKKEAMKTVKSGEEASVMGQVNEILKEGEEDVVLEERMR 240
           EGPAE  MR +A +EWRRLDE+++EA K V SGE A V     E     E++  + E  R
Sbjct: 181 EGPAEEAMRREAAEEWRRLDEVRREARKGVVSGEVAEVTAVARE--VLKEDEEEVVEEER 238

Query: 241 EMEIERKEKEREFVVHVPLPDDKEIEKMVIERKKMELLKKYATEEFVEEQNEAKAMLNIQ 300
             E E + + REFVVHVPLPD+KEIE+ V+E+KK +LL +YA+E  VEEQ EAK MLNIQ
Sbjct: 239 AREREEERERREFVVHVPLPDEKEIERRVLEKKKKDLLSRYASEGLVEEQTEAKDMLNIQ 298

Query: 301 R 301
           R
Sbjct: 299 R 299

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356530715|ref|XP_003533926.1| PREDICTED: pre-mRNA-splicing factor ISY1 homolog [Glycine max]

 Score =  413 bits (1061), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 231/301 (76%), Positives = 258/301 (85%), Gaps = 2/301 (0%)

Query: 1   MARNEEKAQSMLNRYIALQAEEKKKPKERRPYLASECRDLSEADKWRQQIMREIGRKVAE 60
           MARNEEKAQSMLNR+I ++AEEKKKPKERRP+LASECRDLSEADKWRQQIMREIGRKVAE
Sbjct: 1   MARNEEKAQSMLNRFITMKAEEKKKPKERRPFLASECRDLSEADKWRQQIMREIGRKVAE 60

Query: 61  IQNEGLGEHRLRDLNDEINKLIREKGHWERRIFELGGPNYTKHFAKMTDLEGNIVDVPNP 120
           IQNEGLGEHRLRDLNDEINKLIREK HWERRI ELGGPNY+KH AKMTDL+GNIVDVPNP
Sbjct: 61  IQNEGLGEHRLRDLNDEINKLIREKSHWERRIVELGGPNYSKHSAKMTDLDGNIVDVPNP 120

Query: 121 SGRGPGYRYFGAAKKLPGVRELFEKPPELRKRRTRYDIYKRIDASYYGYRDDEDGVLERV 180
            GRGPGYRYFGAAKKLPGV+ELFEKPPELR+RRTRYDIYKRIDASYYGYRD+EDGVL R+
Sbjct: 121 GGRGPGYRYFGAAKKLPGVKELFEKPPELRRRRTRYDIYKRIDASYYGYRDEEDGVLARL 180

Query: 181 EGPAEREMRAKAVQEWRRLDEIKKEAMKTVKSGEEASVMGQVNEILKEGEEDVVLEERMR 240
           EGPAE  MR +A +EWRRLDE+++EA K V SGE A V     E     E++  + E  R
Sbjct: 181 EGPAEEAMRREAAEEWRRLDEVRREARKWVVSGEVAEVTAVARE--VLKEDEEEVVEEER 238

Query: 241 EMEIERKEKEREFVVHVPLPDDKEIEKMVIERKKMELLKKYATEEFVEEQNEAKAMLNIQ 300
             E E + + REFVVHVPLPD+KEIE+ V+E+KK +LL +YA+E  VEEQ EAK MLNIQ
Sbjct: 239 AREREEERERREFVVHVPLPDEKEIERRVLEKKKKDLLSRYASEGLVEEQTEAKDMLNIQ 298

Query: 301 R 301
           R
Sbjct: 299 R 299

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|15230193|ref|NP_188509.1| pre-mRNA-splicing factor ISY1 [Arabidopsis thaliana] gi|9293904|dbj|BAB01807.1| unnamed protein product [Arabidopsis thaliana] gi|18086381|gb|AAL57650.1| AT3g18790/MVE11_17 [Arabidopsis thaliana] gi|19699138|gb|AAL90935.1| AT3g18790/MVE11_17 [Arabidopsis thaliana] gi|26452139|dbj|BAC43158.1| unknown protein [Arabidopsis thaliana] gi|227202802|dbj|BAH56874.1| AT3G18790 [Arabidopsis thaliana] gi|332642628|gb|AEE76149.1| pre-mRNA-splicing factor ISY1 [Arabidopsis thaliana]

 Score =  412 bits (1059), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 223/303 (73%), Positives = 255/303 (84%), Gaps = 5/303 (1%)

Query: 1   MARNEEKAQSMLNRYIALQAEEKKKPKERRPYLASECRDLSEADKWRQQIMREIGRKVAE 60
           MARNEEKAQSMLNR+I  +  EKKKPKERRPYLASECRDL+EADKWRQQI+REIG KVAE
Sbjct: 1   MARNEEKAQSMLNRFITQKESEKKKPKERRPYLASECRDLAEADKWRQQILREIGSKVAE 60

Query: 61  IQNEGLGEHRLRDLNDEINKLIREKGHWERRIFELGGPNYTKHFAKMTDLEGNIVDVPNP 120
           IQNEGLGEHRLRDLNDEINKL+RE+ HWERRI ELGG NY+KH AKMTDLEGNI+DVPNP
Sbjct: 61  IQNEGLGEHRLRDLNDEINKLLRERYHWERRIVELGGHNYSKHSAKMTDLEGNIIDVPNP 120

Query: 121 SGRGPGYRYFGAAKKLPGVRELFEKPPELRKRRTRYDIYKRIDASYYGYRDDEDGVLERV 180
           SGRGPGYRYFGAAKKLPGVRELFEKPPELRKR+TRYDIYKRIDASYYGYRDDEDG+LE++
Sbjct: 121 SGRGPGYRYFGAAKKLPGVRELFEKPPELRKRKTRYDIYKRIDASYYGYRDDEDGILEKL 180

Query: 181 EGPAEREMRAKAVQEWRRLDEIKKEAMKTVKSGEEASVMGQVNEILK--EGEEDVVLEER 238
           E  +E  MR ++V+EWRRLDE++KEA    K   E   +G      +    EE+  + E 
Sbjct: 181 ERKSEGGMRKRSVEEWRRLDEVRKEAR---KGASEVVSVGAAAAAAREVLFEEEEDVVEE 237

Query: 239 MREMEIERKEKEREFVVHVPLPDDKEIEKMVIERKKMELLKKYATEEFVEEQNEAKAMLN 298
            R    + +EKEREFVVHVPLPD+KEIEKMV+E+KKM+LL KYA+E+ VE+Q EAK+MLN
Sbjct: 238 ERMEREKEEEKEREFVVHVPLPDEKEIEKMVLEKKKMDLLSKYASEDLVEQQTEAKSMLN 297

Query: 299 IQR 301
           I R
Sbjct: 298 IHR 300

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|226510490|ref|NP_001148910.1| LOC100282530 [Zea mays] gi|195623174|gb|ACG33417.1| pre-mRNA-splicing factor ISY1 [Zea mays] gi|413937654|gb|AFW72205.1| pre-mRNA-splicing factor ISY1 [Zea mays]

 Score =  402 bits (1032), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 204/311 (65%), Positives = 251/311 (80%), Gaps = 10/311 (3%)

Query: 1   MARNEEKAQSMLNRYIALQAEEKKKPKERRPYLASECRDLSEADKWRQQIMREIGRKVAE 60
           MARNEEKAQSMLNR+I ++ EEK+KP+ERRPYLASECRDL++A++WR +I+REIG KVAE
Sbjct: 1   MARNEEKAQSMLNRFITMKQEEKRKPRERRPYLASECRDLADAERWRSEILREIGAKVAE 60

Query: 61  IQNEGLGEHRLRDLNDEINKLIREKGHWERRIFELGGPNYTK--HFAKMTDLEGNIVDVP 118
           IQNEGLGEHRLRDLNDEINKL+RE+GHWERRI ELGG +Y++  +   MTDL+GNIV VP
Sbjct: 61  IQNEGLGEHRLRDLNDEINKLLRERGHWERRIVELGGRDYSRSSNAPLMTDLDGNIVAVP 120

Query: 119 NPSGRGPGYRYFGAAKKLPGVRELFEKPPELRKRRTRYDIYKRIDASYYGYRDDEDGVLE 178
           NPSGRGPGYRYFGAA+KLPGVRELF+KPPE+RKRRTRY+I+KRI+A YYGY DDEDGVLE
Sbjct: 121 NPSGRGPGYRYFGAARKLPGVRELFDKPPEMRKRRTRYEIHKRINAGYYGYYDDEDGVLE 180

Query: 179 RVEGPAEREMRAKAVQEWRRLDEIKKEAMKTVKSGEEASVMGQVNEILKE--------GE 230
           R+EGPAE+ MR + V EW R++ +++EAMK V SGE A+  G+  E  +E          
Sbjct: 181 RLEGPAEKRMREEIVSEWHRVERVRREAMKGVMSGEVAAAGGRSGEAAREVLFEGVEEEV 240

Query: 231 EDVVLEERMREMEIERKEKEREFVVHVPLPDDKEIEKMVIERKKMELLKKYATEEFVEEQ 290
           E+    E  +    + +E  REFV HVPLPD+KEIE+MV+ERKK ELL KYA++  + EQ
Sbjct: 241 EEERKREEEKREREKGEEVGREFVAHVPLPDEKEIERMVLERKKKELLSKYASDSLLVEQ 300

Query: 291 NEAKAMLNIQR 301
            EAK MLN++R
Sbjct: 301 EEAKEMLNVRR 311

Source: Zea mays

Species: Zea mays

Genus: Zea

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	301
TAIR|locus:2093964	300	AT3G18790 "AT3G18790" [Arabido	0.986	0.99	0.674	1.1e-103
RGD|1307688	284	Isy1 "ISY1 splicing factor hom	0.936	0.992	0.451	5.1e-58
MGI|MGI:1923310	285	Isy1 "ISY1 splicing factor hom	0.936	0.989	0.453	6.6e-58
UNIPROTKB|Q9ULR0	285	ISY1 "Pre-mRNA-splicing factor	0.936	0.989	0.449	1.1e-57
DICTYBASE|DDB_G0285521	299	isy1 "ISY1-like protein" [Dict	0.634	0.638	0.517	4.2e-55
FB|FBgn0037550	272	CG9667 [Drosophila melanogaste	0.880	0.974	0.438	8.9e-54
WB|WBGene00009966	267	F53B7.3 [Caenorhabditis elegan	0.873	0.985	0.395	1.2e-42
UNIPROTKB|Q51LS1	246	ISY1 "Pre-mRNA-splicing factor	0.604	0.739	0.448	1.9e-37
ASPGD|ASPL0000071699	256	AN4707 [Emericella nidulans (t	0.657	0.773	0.4	2.3e-32
POMBASE|SPBC32F12.05c	217	cwf12 "complexed with Cdc5 pro	0.574	0.797	0.365	1e-25

TAIR|locus:2093964 AT3G18790 "AT3G18790" [Arabidopsis thaliana (taxid:3702)]

 Score = 1027 (366.6 bits), Expect = 1.1e-103, P = 1.1e-103
 Identities = 205/304 (67%), Positives = 233/304 (76%)

Query:     1 MARNEEKAQSMLNRYIALQAXXXXXXXXXXXYLASECRDLSEADKWRQQIMREIGRKVAE 60
             MARNEEKAQSMLNR+I  +            YLASECRDL+EADKWRQQI+REIG KVAE
Sbjct:     1 MARNEEKAQSMLNRFITQKESEKKKPKERRPYLASECRDLAEADKWRQQILREIGSKVAE 60

Query:    61 IQNEGLGEHRLRDLNDEINKLIREKGHWERRIFELGGPNYTKHFAKMTDLEGNIVDVPNP 120
             IQNEGLGEHRLRDLNDEINKL+RE+ HWERRI ELGG NY+KH AKMTDLEGNI+DVPNP
Sbjct:    61 IQNEGLGEHRLRDLNDEINKLLRERYHWERRIVELGGHNYSKHSAKMTDLEGNIIDVPNP 120

Query:   121 SGRGPGYRYFGAAKKLPGVRELFEKPPELRKRRTRYDIYKRIDASYYGYRDDEDGVLERV 180
             SGRGPGYRYFGAAKKLPGVRELFEKPPELRKR+TRYDIYKRIDASYYGYRDDEDG+LE++
Sbjct:   121 SGRGPGYRYFGAAKKLPGVRELFEKPPELRKRKTRYDIYKRIDASYYGYRDDEDGILEKL 180

Query:   181 EGPAEREMRAKAVQEWRRLDEIKKEAMKTVKSGEEASV---MGQVNEILKEGXXXXXXXX 237
             E  +E  MR ++V+EWRRLDE++KEA K   + E  SV        E+L E         
Sbjct:   181 ERKSEGGMRKRSVEEWRRLDEVRKEARKG--ASEVVSVGAAAAAAREVLFE--EEEDVVE 236

Query:   238 XXXXXXXXXXXXXXXXXXHVPLPDDKEIEKMVIERKKMELLKKYATEEFVEEQNEAKAML 297
                               HVPLPD+KEIEKMV+E+KKM+LL KYA+E+ VE+Q EAK+ML
Sbjct:   237 EERMEREKEEEKEREFVVHVPLPDEKEIEKMVLEKKKMDLLSKYASEDLVEQQTEAKSML 296

Query:   298 NIQR 301
             NI R
Sbjct:   297 NIHR 300

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0009507 "chloroplast" evidence=IDA

GO:0005829 "cytosol" evidence=IDA

RGD|1307688 Isy1 "ISY1 splicing factor homolog (S. cerevisiae)" [Rattus norvegicus (taxid:10116)]

 Score = 596 (214.9 bits), Expect = 5.1e-58, P = 5.1e-58
 Identities = 134/297 (45%), Positives = 177/297 (59%)

Query:     1 MARNEEKAQSMLNRYIALQAXXXXXXXXXXXYLASECRDLSEADKWRQQIMREIGRKVAE 60
             MARN EKA + L R+   Q            +LASEC +L +A+KWR+QI+ EI +KVA+
Sbjct:     1 MARNAEKAMTALARFRQAQLEEGKVKERRP-FLASECTELPKAEKWRRQIIGEISKKVAQ 59

Query:    61 IQNEGLGEHRLRDLNDEINKLIREKGHWERRIFELGGPNYTKHFAKMTDLEGNIVDVPNP 120
             IQN GLGE R+RDLNDEINKL+REKGHWE RI ELGGP+Y K   KM D EG  V    P
Sbjct:    60 IQNAGLGEFRIRDLNDEINKLLREKGHWEVRIKELGGPDYGKVGPKMLDHEGKEV----P 115

Query:   121 SGRGPGYRYFGAAKKLPGVRELFEKPPELRKRRTRYDIYKRIDASYYGYRDDEDGVLERV 180
               RG  Y+YFGAAK LPGVRELFEK P    R+TR ++ K ID  YYGY D++DGV+  +
Sbjct:   116 GNRG--YKYFGAAKDLPGVRELFEKEPLPPPRKTRAELMKAIDFEYYGYLDEDDGVIVPL 173

Query:   181 EGPAEREMRAKAVQEWRRLDEIKKEAMKTVKSGEEASVMGQVNEILKEGXXXXXXXXXXX 240
             E   E+ +RA+ V++W+   E +    +  +  EE  +   +  + +E            
Sbjct:   174 EQEYEKRLRAELVEKWKAEREARLARGEKEEEEEEEEI--NIYAVTEE------ESDEEG 225

Query:   241 XXXXXXXXXXXXXXXHVPLPDDKEIEKMVIERKKMELLKKYATEEFVEEQNEAKAML 297
                            HVP+P  +EIE+ ++ RKKMELL+KYA+E    +  EAK +L
Sbjct:   226 SQEKAGEDGQQKFIAHVPVPSQQEIEEALVRRKKMELLQKYASETLQAQSEEAKRLL 282

GO:0005634 "nucleus" evidence=ISO

GO:0005681 "spliceosomal complex" evidence=IEA

GO:0006397 "mRNA processing" evidence=IEA

GO:0008380 "RNA splicing" evidence=IEA

GO:0071013 "catalytic step 2 spliceosome" evidence=ISO

GO:0005730 "nucleolus" evidence=ISO

MGI|MGI:1923310 Isy1 "ISY1 splicing factor homolog (S. cerevisiae)" [Mus musculus (taxid:10090)]

 Score = 595 (214.5 bits), Expect = 6.6e-58, P = 6.6e-58
 Identities = 135/298 (45%), Positives = 178/298 (59%)

Query:     1 MARNEEKAQSMLNRYIALQAXXXXXXXXXXXYLASECRDLSEADKWRQQIMREIGRKVAE 60
             MARN EKA + L R+   Q            +LASEC +L +A+KWR+QI+ EI +KVA+
Sbjct:     1 MARNAEKAMTALARFRQAQLEEGKVKERRP-FLASECTELPKAEKWRRQIIGEISKKVAQ 59

Query:    61 IQNEGLGEHRLRDLNDEINKLIREKGHWERRIFELGGPNYTKHFAKMTDLEGNIVDVPNP 120
             IQN GLGE R+RDLNDEINKL+REKGHWE RI ELGGP+Y K   KM D EG  V    P
Sbjct:    60 IQNAGLGEFRIRDLNDEINKLLREKGHWEVRIKELGGPDYGKVGPKMLDHEGKEV----P 115

Query:   121 SGRGPGYRYFGAAKKLPGVRELFEKPPELRKRRTRYDIYKRIDASYYGYRDDEDGVLERV 180
               RG  Y+YFGAAK LPGVRELFEK P    R+TR ++ K ID  YYGY D++DGV+  +
Sbjct:   116 GNRG--YKYFGAAKDLPGVRELFEKEPLPPPRKTRAELMKAIDFEYYGYLDEDDGVIVPL 173

Query:   181 EGPAEREMRAKAVQEWRRLDEIK-KEAMKTVKSGEEASVMGQVNEILKEGXXXXXXXXXX 239
             E   E+++RA+ V++W+   E +     K  +  EE  +   +  + +E           
Sbjct:   174 EQEYEKKLRAELVEKWKAEREARLARGEKEEEEEEEEEI--NIYAVTEE------ESDEE 225

Query:   240 XXXXXXXXXXXXXXXXHVPLPDDKEIEKMVIERKKMELLKKYATEEFVEEQNEAKAML 297
                             HVP+P  +EIE+ ++ RKKMELL+KYA+E    +  EAK +L
Sbjct:   226 GNQEKAGEDGQQKFIAHVPVPSQQEIEEALVRRKKMELLQKYASETLQAQSEEAKRLL 283

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=IEA

GO:0005681 "spliceosomal complex" evidence=IEA

GO:0006397 "mRNA processing" evidence=IEA

GO:0008150 "biological_process" evidence=ND

GO:0008380 "RNA splicing" evidence=IEA

UNIPROTKB|Q9ULR0 ISY1 "Pre-mRNA-splicing factor ISY1 homolog" [Homo sapiens (taxid:9606)]

 Score = 593 (213.8 bits), Expect = 1.1e-57, P = 1.1e-57
 Identities = 134/298 (44%), Positives = 178/298 (59%)

Query:     1 MARNEEKAQSMLNRYIALQAXXXXXXXXXXXYLASECRDLSEADKWRQQIMREIGRKVAE 60
             MARN EKA + L R+   Q            +LASEC +L +A+KWR+QI+ EI +KVA+
Sbjct:     1 MARNAEKAMTALARFRQAQLEEGKVKERRP-FLASECTELPKAEKWRRQIIGEISKKVAQ 59

Query:    61 IQNEGLGEHRLRDLNDEINKLIREKGHWERRIFELGGPNYTKHFAKMTDLEGNIVDVPNP 120
             IQN GLGE R+RDLNDEINKL+REKGHWE RI ELGGP+Y K   KM D EG  V    P
Sbjct:    60 IQNAGLGEFRIRDLNDEINKLLREKGHWEVRIKELGGPDYGKVGPKMLDHEGKEV----P 115

Query:   121 SGRGPGYRYFGAAKKLPGVRELFEKPPELRKRRTRYDIYKRIDASYYGYRDDEDGVLERV 180
               RG  Y+YFGAAK LPGVRELFEK P    R+TR ++ K ID  YYGY D++DGV+  +
Sbjct:   116 GNRG--YKYFGAAKDLPGVRELFEKEPLPPPRKTRAELMKAIDFEYYGYLDEDDGVIVPL 173

Query:   181 EGPAEREMRAKAVQEWRRLDEIK-KEAMKTVKSGEEASVMGQVNEILKEGXXXXXXXXXX 239
             E   E+++RA+ V++W+   E +     K  +  EE  +   +  + +E           
Sbjct:   174 EQEYEKKLRAELVEKWKAEREARLARGEKEEEEEEEEEI--NIYAVTEE------ESDEE 225

Query:   240 XXXXXXXXXXXXXXXXHVPLPDDKEIEKMVIERKKMELLKKYATEEFVEEQNEAKAML 297
                             HVP+P  +EIE+ ++ RKKMELL+KYA+E    +  EA+ +L
Sbjct:   226 GSQEKGGDDSQQKFIAHVPVPSQQEIEEALVRRKKMELLQKYASETLQAQSEEARRLL 283

GO:0000398 "mRNA splicing, via spliceosome" evidence=IC

GO:0071013 "catalytic step 2 spliceosome" evidence=IDA

GO:0005634 "nucleus" evidence=IDA

GO:0005730 "nucleolus" evidence=IDA

DICTYBASE|DDB_G0285521 isy1 "ISY1-like protein" [Dictyostelium discoideum (taxid:44689)]

 Score = 524 (189.5 bits), Expect = 4.2e-55, Sum P(2) = 4.2e-55
 Identities = 104/201 (51%), Positives = 136/201 (67%)

Query:     1 MARNEEKAQSMLNRYIALQAXXXXXXXXXXXYLASECRDLSEADKWRQQIMREIGRKVAE 60
             MARNEEKA+SMLNRY+ L+            YL++EC  L +A+KWR+QI++EI R + E
Sbjct:     1 MARNEEKAKSMLNRYLQLKGTESKQEERRP-YLSNECDSLVDAEKWRRQILKEITRGITE 59

Query:    61 IQNEGLGEHRLRDLNDEINKLIREKGHWERRIFELGGPNYTKHFAKMTDLEGNIVDVPNP 120
             IQN  L E+++RDLND INKL+REKGHWERRI +LGGPN+     K+ D +G       P
Sbjct:    60 IQNSALDEYKIRDLNDHINKLVREKGHWERRILQLGGPNHRALAPKLFDADGK-----EP 114

Query:   121 SGRGPGYRYFGAAKKLPGVRELFEKPPEL---RKRRTRYDIYKRIDASYYGYRDDEDGVL 177
              G G  YRY+G AK LPGV ELFEKP +     +++TR D+YK ID+ YYGYRDDEDG L
Sbjct:   115 LGTGT-YRYYGEAKNLPGVAELFEKPEQTLHGTEKKTRQDLYKYIDSDYYGYRDDEDGKL 173

Query:   178 ERVEGPAEREMRAKAVQEWRR 198
             E +E   E+    + V+ W++
Sbjct:   174 EEIEREYEKYAIEQNVENWKK 194

GO:0005681 "spliceosomal complex" evidence=IEA;ISS

GO:0000398 "mRNA splicing, via spliceosome" evidence=ISS

GO:0008380 "RNA splicing" evidence=IEA

GO:0006397 "mRNA processing" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

FB|FBgn0037550 CG9667 [Drosophila melanogaster (taxid:7227)]

 Score = 556 (200.8 bits), Expect = 8.9e-54, P = 8.9e-54
 Identities = 125/285 (43%), Positives = 170/285 (59%)

Query:     1 MARNEEKAQSMLNRYIALQAXXXXXXXXXXXYLASECRDLSEADKWRQQIMREIGRKVAE 60
             MARN EKA + L R+ A +            YLASEC DL   +K+R +I+R+I +KVA+
Sbjct:     1 MARNAEKAMTTLARWRAAKEVESGEKERRP-YLASECHDLPRCEKFRLEIIRDISKKVAQ 59

Query:    61 IQNEGLGEHRLRDLNDEINKLIREKGHWERRIFELGGPNYTKHFAKMTDLEGNIVDVPNP 120
             IQN GLGE R+RDLNDEINKL+REK HWE +I  LGGP+Y ++  KM D EG  V    P
Sbjct:    60 IQNAGLGEFRIRDLNDEINKLLREKRHWENQISSLGGPHYRRYGPKMFDAEGREV----P 115

Query:   121 SGRGPGYRYFGAAKKLPGVRELFEKPPELRKRRTRYDIYKRIDASYYGYRDDEDGVLERV 180
               RG  Y+YFGAAK LPGVRELFE+ P    R++R ++ K IDA YYGYRDDEDGVL  +
Sbjct:   116 GNRG--YKYFGAAKDLPGVRELFEQDPPPPPRKSRAELMKDIDAEYYGYRDDEDGVLIPL 173

Query:   181 EGPAEREMRAKAVQEWRRLDEIKKEAMKTVKSGEEASVM---GQVNEILKEGXXXXXXXX 237
             E   ER    KAVQEWR  +++ ++  + +   EE  +    G   E +++         
Sbjct:   174 EERIERAAIQKAVQEWR--EKMARDG-RIIDDEEEDEIYPLSGPAREAIEDAKARAAVED 230

Query:   238 XXXXXXXXXXXXXXXXXXHVPLPDDKEIEKMVIERKKMELLKKYA 282
                               HVP+P  +++++ ++ ++K ELL+KYA
Sbjct:   231 PHGLLASKFTA-------HVPVPTQQDVQEALLRQRKRELLEKYA 268

GO:0000398 "mRNA splicing, via spliceosome" evidence=IC

GO:0071011 "precatalytic spliceosome" evidence=IDA

GO:0071013 "catalytic step 2 spliceosome" evidence=IDA

WB|WBGene00009966 F53B7.3 [Caenorhabditis elegans (taxid:6239)]

 Score = 451 (163.8 bits), Expect = 1.2e-42, P = 1.2e-42
 Identities = 112/283 (39%), Positives = 157/283 (55%)

Query:     1 MARNEEKAQSMLNRYIALQAXXXXXXXXXXXYLASECRDLSEADKWRQQIMREIGRKVAE 60
             MARN EKA + L R+  ++            +   +CR+LS+A+++R++I+R+  +K+  
Sbjct:     1 MARNAEKAMTALARWRRMKEEEERGPIARRPHDVKDCRNLSDAERFRREIVRDASKKITA 60

Query:    61 IQNEGLGEHRLRDLNDEINKLIREKGHWERRIFELGGPNYTKHFAKMTDLEGNIVDVPNP 120
             IQN GLGE +LRDLNDE+N+LI+ K  WE+RI ELGG +Y K+  K  D  G        
Sbjct:    61 IQNPGLGEFKLRDLNDEVNRLIKLKHAWEQRIRELGGTDYRKYAQKELDAIGR------E 114

Query:   121 SGRGPGYRYFGAAKKLPGVRELFEKPPE-LRKRRTRYDIYKRIDASYYGYRDDEDGVLER 179
             +G   GY+YFGAAK LPGVRELFEK  E   +RR R D+ + IDA Y+GY DDEDG L  
Sbjct:   115 TGNSRGYKYFGAAKDLPGVRELFEKSTEGEEQRRHRADLLRNIDAHYFGYLDDEDGRLIP 174

Query:   180 VEGPAEREMRAKAVQEWRRLDEIKKE-AMKTVKSGEEASVMGQVNEILKEGXXXXXXXXX 238
             +E         K ++E + ++ I KE A K  +  + AS     N I K           
Sbjct:   175 LE---------KLIEE-KNIERINKEFAEKQAQKQQTASDAAPEN-IYKV-EEDDDDDLE 222

Query:   239 XXXXXXXXXXXXXXXXXHVPLPDDKEIEKMVIERKKMELLKKY 281
                              HV LP  ++IE+M++E+KK EL+ KY
Sbjct:   223 TQESTVIGEDGRPMTIRHVLLPTQQDIEEMLLEQKKQELMAKY 265

GO:0009792 "embryo development ending in birth or egg hatching" evidence=IMP

GO:0018996 "molting cycle, collagen and cuticulin-based cuticle" evidence=IMP

GO:0000003 "reproduction" evidence=IMP

GO:0040035 "hermaphrodite genitalia development" evidence=IMP

GO:0002119 "nematode larval development" evidence=IMP

GO:0042127 "regulation of cell proliferation" evidence=IMP

GO:0040020 "regulation of meiosis" evidence=IMP

GO:0007281 "germ cell development" evidence=IMP

GO:0008406 "gonad development" evidence=IMP

GO:0016477 "cell migration" evidence=IMP

UNIPROTKB|Q51LS1 ISY1 "Pre-mRNA-splicing factor ISY1" [Magnaporthe oryzae 70-15 (taxid:242507)]

 Score = 375 (137.1 bits), Expect = 1.9e-37, Sum P(2) = 1.9e-37
 Identities = 88/196 (44%), Positives = 116/196 (59%)

Query:     1 MARNEEKAQSMLNRYIALQAXXXXXXXXXXXY---LASECRDLSEADKWRQQIMREIGRK 57
             MARN EKAQSML R+   QA                 +E   +   +KWR Q++++I RK
Sbjct:     1 MARNSEKAQSMLFRFREAQAADLGIIDAGRTRRPRAITEQDSIPACEKWRGQVLKDISRK 60

Query:    58 VAEIQNEGLGEHRLRDLNDEINKLIREKGHWERRIFELGGPNYTKHF-AKMTDLEGNIVD 116
             V+ IQ   L ++++RDLNDEINKL+REK  WE +I  LGGPNYT+   AK+ D  G  + 
Sbjct:    61 VSRIQESSLSDYQIRDLNDEINKLMREKHMWEVQIRNLGGPNYTRAGGAKVYDEAGKEI- 119

Query:   117 VPNPSGRGPGYRYFGAAKKLPGVRELFE----KPPELRKRRTRYDIYKRIDASYYGYR-D 171
                  G G GYRYFG AK+LPGV+ELFE    K  + +    R D+ K++DA+YYGY  D
Sbjct:   120 ----GGAGRGYRYFGRAKELPGVKELFEAARAKKGDEKPLEARDDLRKQVDAAYYGYSPD 175

Query:   172 DEDGVLERVEGPAERE 187
             +ED  L   E   E+E
Sbjct:   176 EEDDELLAYEAAKEKE 191

GO:0003674 "molecular_function" evidence=ND

ASPGD|ASPL0000071699 AN4707 [Emericella nidulans (taxid:162425)]

 Score = 354 (129.7 bits), Expect = 2.3e-32, P = 2.3e-32
 Identities = 88/220 (40%), Positives = 124/220 (56%)

Query:     1 MARNEEKAQSMLNRYIALQAXXXXXXXXXXXY---LASECRDLSEADKWRQQIMREIGRK 57
             MARN EKAQSML R+ A QA                 +    +   +KWR Q+++EI RK
Sbjct:     1 MARNSEKAQSMLFRFRAQQAADLGIIDIGRTRRPKAITSVDSIPACEKWRGQVLKEISRK 60

Query:    58 VAEIQNEGLGEHRLRDLNDEINKLIREKGHWERRIFELGGPNYTKHFAKMTDLEGNIVDV 117
             V+ IQ   L +H++RDLNDEINKL+REK  WE +I  +GGPNY +   ++ D EG   ++
Sbjct:    61 VSRIQEPSLSDHQIRDLNDEINKLMREKWAWEMQIRNMGGPNYMRGSGRVYDDEGR--EI 118

Query:   118 PNPSGRGPGYRYFGAAKKLPGVRELFEK-------PPELRKRRTRY-----DIY-KRIDA 164
             P   G G GYRYFG A++LPGV+E+ E        P E  +   +      DI  K++DA
Sbjct:   119 P---GGGKGYRYFGRARELPGVKEMLEAAARRGRGPAEEEEDDGKTVGRGGDIATKKVDA 175

Query:   165 SYYGYR-DDEDGVLERVEGPAEREMRAKAVQEWRRLDEIK 203
             +Y+GY  D+EDG L   E   E+E   K  +E    ++++
Sbjct:   176 NYFGYGLDEEDGTLLAYEMQREKEAVEKLRKEGEDEEDVE 215

GO:0008150 "biological_process" evidence=ND

GO:0005634 "nucleus" evidence=IEA

GO:0005829 "cytosol" evidence=IEA

GO:0003674 "molecular_function" evidence=ND

POMBASE|SPBC32F12.05c cwf12 "complexed with Cdc5 protein Cwf12" [Schizosaccharomyces pombe (taxid:4896)]

 Score = 263 (97.6 bits), Expect = 1.0e-25, Sum P(2) = 1.0e-25
 Identities = 69/189 (36%), Positives = 112/189 (59%)

Query:    44 DKWRQQIMREIGRKVAEIQNEGLGEHRLRDLNDEINKLIREKGHWERRIFELGGPNYTKH 103
             +K R  ++++I RK++ IQ+  L E+++RDLND IN+L+REK  WE +I +LGG NY  +
Sbjct:    30 EKHRASVVKDISRKISRIQSATLPEYQIRDLNDAINRLMREKHEWEVQIRDLGGINYLYN 89

Query:   104 FAKMTDLEGN-IVDVPNPSGRGPGYRYFGAAKKLPGVRELFEKPPE-LRKRRTRYDIYKR 161
              AK+ + EG  I D+ +       YRY+G A++LPGV+ELFE     + +R+ + ++ KR
Sbjct:    90 KAKLFEDEGEQISDIDD-------YRYYGRARELPGVKELFEADMSFIPERQRKQEMQKR 142

Query:   162 -IDASYYGYRDD-EDGVLERVEGPAEREMRAKAVQEWRRLDEIKKEAMKTVKSGEEASVM 219
              +DA Y+GY    ++ +LE  E   E E + K ++     DE++++    V   E+    
Sbjct:   143 RLDAWYFGYIPPAQESLLEDFEAKIE-EQQHKHLENLG--DEVEQDWKPLVI--EQIPTR 197

Query:   220 GQVNEILKE 228
               V  IL E
Sbjct:   198 DDVEAILLE 206

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=IDA

GO:0005681 "spliceosomal complex" evidence=ISS

GO:0005829 "cytosol" evidence=IDA

GO:0045292 "mRNA cis splicing, via spliceosome" evidence=ISS

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q6AYB3	ISY1_RAT	No assigned EC number	0.5050	0.9368	0.9929	yes	no
Q54N41	ISY1_DICDI	No assigned EC number	0.5472	0.6345	0.6387	yes	no
Q6BU51	ISY1_DEBHA	No assigned EC number	0.3127	0.8704	0.8791	yes	no
Q69ZQ2	ISY1_MOUSE	No assigned EC number	0.4899	0.9435	0.9964	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	301
pfam06246	253	pfam06246, Isy1, Isy1-like splicing family	1e-94

>gnl|CDD|218954 pfam06246, Isy1, Isy1-like splicing family

 Score =  279 bits (717), Expect = 1e-94
 Identities = 136/287 (47%), Positives = 172/287 (59%), Gaps = 40/287 (13%)

Query: 1   MARNEEKAQSMLNRYIALQAEEKKKPKE---RRPYLASECRDLSEADKWRQQIMREIGRK 57
           MARN EKAQSMLNR+   +A E         RRP L SE   L EA+KWR QI++EI RK
Sbjct: 1   MARNSEKAQSMLNRFREAKAAEAGGLDSNRTRRPKLISEVTSLPEAEKWRSQIIKEISRK 60

Query: 58  VAEIQNEGLGEHRLRDLNDEINKLIREKGHWERRIFELGGPNYTKHFAKMTDLEGNIVDV 117
           V EIQ+  LGE+++RDLNDEINKL REK HWE RI ELGGP+Y +   K+ D EG  V  
Sbjct: 61  VTEIQDPSLGEYQIRDLNDEINKLFREKRHWEDRIRELGGPDYRRLSGKLNDAEGKEV-- 118

Query: 118 PNPSGRGPGYRYFGAAKKLPGVRELFEKPPELRK---RRTRYDIYKRIDASYYGYRDDED 174
                 G GYRYFG AK+LPGV+ELFEK PE RK   R++R ++YKRIDA YYGYRD+ED
Sbjct: 119 ----PGGRGYRYFGRAKELPGVKELFEKEPEDRKEKPRKSRAELYKRIDADYYGYRDEED 174

Query: 175 GVLERVEGPAEREMRAKAVQEWRRLDEIKKEAMKTVKSGEEASVMGQVNEILKEGEEDVV 234
           GVL   E   E+E+  K V+EW+                              + E+   
Sbjct: 175 GVLLEYEAEREKELIEKLVEEWKE----------------------------IQDEDLQA 206

Query: 235 LEERMREMEIERKEKEREFVVHVPLPDDKEIEKMVIERKKMELLKKY 281
            E+   E      + + EFV HVP+P  +E+E+ ++E++K ELL KY
Sbjct: 207 EEDEREEDIYIPLDDDAEFVAHVPVPTQEEVEEWLLEKRKRELLAKY 253

Isy1 protein is important in the optimisation of splicing. Length = 253

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	301
KOG3068	268	consensus mRNA splicing factor [RNA processing and	100.0
PF06246	255	Isy1: Isy1-like splicing family; InterPro: IPR0093	100.0

>KOG3068 consensus mRNA splicing factor [RNA processing and modification]

Probab=100.00  E-value=1.3e-93  Score=652.35  Aligned_cols=267  Identities=58%  Similarity=0.904  Sum_probs=232.8

Q ss_pred             CCCcHHhHHHHHHHHHHHHHHhhcCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHHhHHHHhhcCCCcchhhhchHHHHH
Q 022215            1 MARNEEKAQSMLNRYIALQAEEKKKPKERRPYLASECRDLSEADKWRQQIMREIGRKVAEIQNEGLGEHRLRDLNDEINK   80 (301)
Q Consensus         1 MARN~EKA~smL~R~~~~k~~e~~~~~~rRP~~~s~v~~l~~aekWR~~Ii~EIs~kv~~Iqd~~L~E~~IRDLNDeINk   80 (301)
                      ||||+|||||||+||+++|.+++++++.+||+++|+|+||++|++||+||++|||+||++||||+||||+||||||+||+
T Consensus         1 MaRN~eka~t~LaRf~~~k~ee~~~pkerRP~~~sec~~l~~aekwRrqIvreIskKva~Iqn~gLgE~rirDLNDEiNk   80 (268)
T KOG3068|consen    1 MARNAEKAMTALARFREAKEEEGGKPKERRPYLASECKSLPEAEKWRRQIVREISKKVARIQNAGLGEFRIRDLNDEINK   80 (268)
T ss_pred             CCccHHHHHHHHHHHHHHHHHhccCccccCcccHHhhcccHHHHHHHHHHHHHHHHHHHHHhcCCcchhhhHHHHHHHHH
Confidence            99999999999999999999999889999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHhhchHHHHHHhcCCCCccccccccccCCCcccCCCCCCCCCCceeeeccccCchhhhhhcCCch-hhhhcchHHHh
Q 022215           81 LIREKGHWERRIFELGGPNYTKHFAKMTDLEGNIVDVPNPSGRGPGYRYFGAAKKLPGVRELFEKPPE-LRKRRTRYDIY  159 (301)
Q Consensus        81 L~rEK~~WE~rI~eLGGpdY~~~~~k~~d~~G~~~evpg~~g~~~GYrYFGrAKeLPgVkELfe~~~~-~~~r~~r~~l~  159 (301)
                      |||||+|||+||++||||||.+.++||+|++|+  +|||    ++|||||||||+||||||||++++. .+++++|++|+
T Consensus        81 LlrEk~~WE~rI~elGG~~y~k~~~Kmld~eg~--ev~~----~rGyrYFGaAkdLPgVrElFEk~~~~~~~rk~rael~  154 (268)
T KOG3068|consen   81 LLREKHHWEVRIRELGGPNYRKYKAKMLDDEGR--EVPN----IRGYRYFGAAKDLPGVRELFEKSPEQPPPRKTRAELM  154 (268)
T ss_pred             HHHHHHHHHHHHHHhcCcchhhhhhhhhhhhcc--cCCC----CCcchhhhhhccCccHHHHHhcCccCCCccchHHHHH
Confidence            999999999999999999999999999999998  9997    9999999999999999999999987 78999999999


Q ss_pred             ccCCCCCccccCCCccchhhccchhHHHHHHHHHHHHHHHHHHHHHhhhhhccCccccccchhhhhhhccchhHHHHHHH
Q 022215          160 KRIDASYYGYRDDEDGVLERVEGPAEREMRAKAVQEWRRLDEIKKEAMKTVKSGEEASVMGQVNEILKEGEEDVVLEERM  239 (301)
Q Consensus       160 k~id~~YYG~~Deedg~L~~~E~~~E~~~~~~~v~~we~~~~~~~~~~~~~~~g~~~~~g~~~~~~~~~e~~~~~~~~~~  239 (301)
                      ++||+.||||.|++||+|+++|+..|..+++..|++|.-.+..+.        |... ...++.+++.-++ +.+|.-..
T Consensus       155 k~iDa~yfgY~ddedg~L~~lE~~~E~~~~~~~v~ew~~~k~ar~--------~~~~-~deee~~~~~l~~-~~~~~~E~  224 (268)
T KOG3068|consen  155 KRIDAEYFGYLDDEDGVLEPLEAKIESKNRERIVEEWRIEKQARK--------GPVE-EDEEEEEIYPLEE-DEEDVIEE  224 (268)
T ss_pred             HhhhHHHcccccccchhhhHHHHHHHHHHHHHHHHHHHHHHHHhc--------CCcc-chhhhhhhhhccc-chhhHHHH
Confidence            999999999999999999999999999999999999983333221        1110 1011112222111 11111111


Q ss_pred             HHHHHHHHhhhhhhcccccCCCHHHHHHHHHHHHHHHHHHHhhc
Q 022215          240 REMEIERKEKEREFVVHVPLPDDKEIEKMVIERKKMELLKKYAT  283 (301)
Q Consensus       240 ~~~~~~~~~~~~~f~~~v~vPt~~eIe~~LlerkK~eLL~ky~s  283 (301)
                      ..+...++++.+.|++|||||||+|||+|||+|||++||+||+|
T Consensus       225 ~~~~~~~ed~~~~f~~hV~vPtqqdiE~~LlerrK~eLl~kya~  268 (268)
T KOG3068|consen  225 QESEVIGEDGRPKFIAHVPVPTQQDIEEMLLERRKMELLSKYAS  268 (268)
T ss_pred             HHhhhccccccccceeeccCCCHHHHHHHHHHHHHHHHHHHhcC
Confidence            22344567788899999999999999999999999999999986

>PF06246 Isy1: Isy1-like splicing family; InterPro: IPR009360 Isy1 protein is important in the optimisation of splicing []

Probab=100.00  E-value=1e-88  Score=629.84  Aligned_cols=249  Identities=56%  Similarity=0.918  Sum_probs=64.5

Q ss_pred             CCCcHHhHHHHHHHHHHHHHHhhcCCCC--CCCCCCCCCCChHHHHHHHHHHHHHHHHhHHHHhhcCCCcchhhhchHHH
Q 022215            1 MARNEEKAQSMLNRYIALQAEEKKKPKE--RRPYLASECRDLSEADKWRQQIMREIGRKVAEIQNEGLGEHRLRDLNDEI   78 (301)
Q Consensus         1 MARN~EKA~smL~R~~~~k~~e~~~~~~--rRP~~~s~v~~l~~aekWR~~Ii~EIs~kv~~Iqd~~L~E~~IRDLNDeI   78 (301)
                      ||||+||||||||||+++|+++.++...  +||++|++|+||++|++||++||+|||+||++||||+||||+||||||+|
T Consensus         1 MARN~EKA~s~L~R~~~~k~~e~~~~~~~~~RP~~~s~v~~l~~ae~WR~~ii~EIs~kv~~Iqd~~L~E~~IRdLNDeI   80 (255)
T PF06246_consen    1 MARNEEKAQSMLNRWQEQKAEEEGGYKDGSRRPKNVSEVKSLPEAEKWRRQIIKEISRKVTRIQDPSLGEFQIRDLNDEI   80 (255)
T ss_dssp             -----------------------SS--------S-TTT---HHHHHHHHHHHHHHHHHHHHHHHH--S-HHHHHHHHHHH
T ss_pred             CCccHHHHHHHHHHHHHHHHHhhCCcccccCCCCChhhcCCHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHH
Confidence            9999999999999999999999986543  99999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHhhchHHHHHHhcCCCCccccccccccCCCcccCCCCCCCCCCceeeeccccCchhhhhhcCCch----hhhhcc
Q 022215           79 NKLIREKGHWERRIFELGGPNYTKHFAKMTDLEGNIVDVPNPSGRGPGYRYFGAAKKLPGVRELFEKPPE----LRKRRT  154 (301)
Q Consensus        79 NkL~rEK~~WE~rI~eLGGpdY~~~~~k~~d~~G~~~evpg~~g~~~GYrYFGrAKeLPgVkELfe~~~~----~~~r~~  154 (301)
                      |+||+||+|||+||++||||||.+.+++|+|+.|+  +|||    ++|||||||||+||||||||++++.    ..++++
T Consensus        81 NkL~rEK~~WE~rI~~LGG~dy~~~~~~~~d~~G~--~~~~----~~GyrYFGrAkeLPgVkeL~e~~~~~~~~~~~~~~  154 (255)
T PF06246_consen   81 NKLIREKRHWERRIKELGGPDYRRSGPKMLDSEGR--EVPG----GRGYRYFGRAKELPGVKELFEKEKKERKEEKPKKT  154 (255)
T ss_dssp             HHHHHHHHHHHHHHHHHTS--STTT-------------------------------------------------------
T ss_pred             HHHHHHHHHHHHHHHHhCCCCccccccccccccCc--ccCC----CCCceEeehhccCccHHHHHhccccccccccchhh
Confidence            99999999999999999999999999999999999  8998    8999999999999999999999887    678899


Q ss_pred             hHHHhccCCCCCccccCCCccchhhccchhHHHHHHHHHHHHHHHHHHHHHhhhhhccCccccccchhhhhhhccchhHH
Q 022215          155 RYDIYKRIDASYYGYRDDEDGVLERVEGPAEREMRAKAVQEWRRLDEIKKEAMKTVKSGEEASVMGQVNEILKEGEEDVV  234 (301)
Q Consensus       155 r~~l~k~id~~YYG~~Deedg~L~~~E~~~E~~~~~~~v~~we~~~~~~~~~~~~~~~g~~~~~g~~~~~~~~~e~~~~~  234 (301)
                      +.++++.||++||||+|++||.|+++|+++|+++...++.+|...........          ..+.+.++.        
T Consensus       155 ~~~~~k~i~~~YYG~~deed~~L~~~E~~~e~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~--------  216 (255)
T PF06246_consen  155 RAELYKDIDADYYGYRDEEDGELLEYEAEAEKELREEAVEEWKEEEDEDEEKE----------EEEEEENIY--------  216 (255)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             HHHHhhcCCccccCCCCCcchhhhHHHHHHHHHHHHHHHHHHHHHHhhhhhhc----------ccccchhhc--------
Confidence            99999999999999999999999999999999999999999987554321100          000000000        


Q ss_pred             HHHHHHHHHHHHHhhhhhhcccccCCCHHHHHHHHHHHHHHHHHHHh
Q 022215          235 LEERMREMEIERKEKEREFVVHVPLPDDKEIEKMVIERKKMELLKKY  281 (301)
Q Consensus       235 ~~~~~~~~~~~~~~~~~~f~~~v~vPt~~eIe~~LlerkK~eLL~ky  281 (301)
                              ..........|++||+|||+++|++|||+|||++||+||
T Consensus       217 --------~~~~~~~~~~~~~~~~vPt~eeve~~ll~rrK~~Ll~ky  255 (255)
T PF06246_consen  217 --------KPLDEEAEDEFVAHVPVPTQEEVEKWLLERRKQELLEKY  255 (255)
T ss_dssp             -----------------------------------------------
T ss_pred             --------cccccccccccccCCCCCCHHHHHHHHHHHHHHHHHHhC
Confidence                    000111223799999999999999999999999999998

; PDB: 1X4T_A.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	301
1x4t_A	92	Solution Structure Of Isy1 Domain In Hypothetical P		6e-25

>pdb|1X4T|A Chain A, Solution Structure Of Isy1 Domain In Hypothetical Protein Length = 92

Iteration: 1
 Score =  111 bits (277), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 51/71 (71%), Positives = 62/71 (87%)
Query: 32  YLASECRDLSEADKWRQQIMREIGRKVAEIQNEGLGEHRLRDLNDEINKLIREKGHWERR 91
           +LASEC +L +A+KWR+QI+ EI +KVA+IQN GLGE R+RDLNDEINKL+REKGHWE R
Sbjct: 15  FLASECTELPKAEKWRRQIIGEISKKVAQIQNAGLGEFRIRDLNDEINKLLREKGHWEVR 74
Query: 92  IFELGGPNYTK 102
           I ELGGP+Y K
Sbjct: 75  IKELGGPDYGK 85

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	301
1x4t_A	92	Hypothetical protein LOC57905; structural genomics	6e-34
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-06

>1x4t_A Hypothetical protein LOC57905; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: a.2.15.1 Length = 92

 Score =  118 bits (297), Expect = 6e-34
 Identities = 57/90 (63%), Positives = 70/90 (77%)

Query: 19  QAEEKKKPKERRPYLASECRDLSEADKWRQQIMREIGRKVAEIQNEGLGEHRLRDLNDEI 78
            +    K KERRP+LASEC +L +A+KWR+QI+ EI +KVA+IQN GLGE R+RDLNDEI
Sbjct: 2   SSGSSGKVKERRPFLASECTELPKAEKWRRQIIGEISKKVAQIQNAGLGEFRIRDLNDEI 61

Query: 79  NKLIREKGHWERRIFELGGPNYTKHFAKMT 108
           NKL+REKGHWE RI ELGGP+Y K     +
Sbjct: 62  NKLLREKGHWEVRIKELGGPDYGKVSGPSS 91

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 47.9 bits (113), Expect = 2e-06
 Identities = 30/283 (10%), Positives = 85/283 (30%), Gaps = 94/283 (33%)

Query: 68  EHRLRDLNDEINKLIREKGH----------WERRI---FELGGPNYTKHFAK--MTDLEG 112
           + R+  +  E+ +L++ K +             +    F L          K  +T    
Sbjct: 224 KLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLS--------CKILLTTRFK 275

Query: 113 NIVDVPNPSGRGPGYRYFGAAKKLPG-----VRELFEK---------PPE---------- 148
            + D  + +       +              V+ L  K         P E          
Sbjct: 276 QVTDFLSAATT----THISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLS 331

Query: 149 -----LRKRRTRYDIYKRIDASYYGYRDDEDGVLER-VEGPAEREMRAKAVQEWRRLDEI 202
                +R     +D +K ++       D    ++E  +      E R       +  D +
Sbjct: 332 IIAESIRDGLATWDNWKHVN------CDKLTTIIESSLNVLEPAEYR-------KMFDRL 378

Query: 203 KKEAM--KTVKSGEEASVMGQVNEIL----KEGEEDVVLEERMREMEIERKEKEREFVVH 256
              ++   +        +   +  ++     + +  VV+ +  +   +E++ KE    + 
Sbjct: 379 ---SVFPPSAH------IPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIP 429

Query: 257 -------VPLPDDKEIEKMVIERKKMELLKKYATEEFVEEQNE 292
                  V L ++  + + +++     + K + +++ +    +
Sbjct: 430 SIYLELKVKLENEYALHRSIVDH--YNIPKTFDSDDLIPPYLD 470

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	301
1x4t_A	92	Hypothetical protein LOC57905; structural genomics	100.0

>1x4t_A Hypothetical protein LOC57905; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: a.2.15.1

Probab=100.00  E-value=1.4e-39  Score=259.81  Aligned_cols=79  Identities=71%  Similarity=1.181  Sum_probs=76.8

Q ss_pred             CCCCCCCCCCCCCChHHHHHHHHHHHHHHHHhHHHHhhcCCCcchhhhchHHHHHHHHHhhchHHHHHHhcCCCCcccc
Q 022215           26 PKERRPYLASECRDLSEADKWRQQIMREIGRKVAEIQNEGLGEHRLRDLNDEINKLIREKGHWERRIFELGGPNYTKHF  104 (301)
Q Consensus        26 ~~~rRP~~~s~v~~l~~aekWR~~Ii~EIs~kv~~Iqd~~L~E~~IRDLNDeINkL~rEK~~WE~rI~eLGGpdY~~~~  104 (301)
                      ++.+||++|++|+||++||+||++||+|||+||++||||+||||+|||||||||+||+||+|||+||++||||||++.+
T Consensus         9 ~~~~RP~~~~~v~~l~~AekWR~qvikEIs~Kv~~Iqn~~L~E~~IRdLNDEINkL~rEK~~WE~rI~eLGGpdY~~~~   87 (92)
T 1x4t_A            9 VKERRPFLASECTELPKAEKWRRQIIGEISKKVAQIQNAGLGEFRIRDLNDEINKLLREKGHWEVRIKELGGPDYGKVS   87 (92)
T ss_dssp             SCCCCCSCTTTCCCHHHHHHHHHHHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCCSTTTS
T ss_pred             ccccCCCChhhcCCHHHHHHHHHHHHHHHHHHHHHhhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCccccC
Confidence            5789999999999999999999999999999999999999999999999999999999999999999999999999765

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	301
d1x4ta1	80	a.2.15.1 (A:7-86) Pre-mRNA-splicing factor ISY1 ho	3e-35

>d1x4ta1 a.2.15.1 (A:7-86) Pre-mRNA-splicing factor ISY1 homolog {Mouse (Mus musculus) [TaxId: 10090]} Length = 80

class: All alpha proteins
fold: Long alpha-hairpin
superfamily: ISY1 domain-like
family: ISY1 N-terminal domain-like
domain: Pre-mRNA-splicing factor ISY1 homolog
species: Mouse (Mus musculus) [TaxId: 10090]

 Score =  120 bits (303), Expect = 3e-35
 Identities = 57/78 (73%), Positives = 68/78 (87%)

Query: 25  KPKERRPYLASECRDLSEADKWRQQIMREIGRKVAEIQNEGLGEHRLRDLNDEINKLIRE 84
           K KERRP+LASEC +L +A+KWR+QI+ EI +KVA+IQN GLGE R+RDLNDEINKL+RE
Sbjct: 2   KVKERRPFLASECTELPKAEKWRRQIIGEISKKVAQIQNAGLGEFRIRDLNDEINKLLRE 61

Query: 85  KGHWERRIFELGGPNYTK 102
           KGHWE RI ELGGP+Y K
Sbjct: 62  KGHWEVRIKELGGPDYGK 79

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	301
d1x4ta1	80	Pre-mRNA-splicing factor ISY1 homolog {Mouse (Mus	100.0

>d1x4ta1 a.2.15.1 (A:7-86) Pre-mRNA-splicing factor ISY1 homolog {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: Long alpha-hairpin
superfamily: ISY1 domain-like
family: ISY1 N-terminal domain-like
domain: Pre-mRNA-splicing factor ISY1 homolog
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=100.00  E-value=4.9e-40  Score=254.80  Aligned_cols=78  Identities=73%  Similarity=1.230  Sum_probs=76.0

Q ss_pred             CCCCCCCCCCCCCCChHHHHHHHHHHHHHHHHhHHHHhhcCCCcchhhhchHHHHHHHHHhhchHHHHHHhcCCCCcc
Q 022215           25 KPKERRPYLASECRDLSEADKWRQQIMREIGRKVAEIQNEGLGEHRLRDLNDEINKLIREKGHWERRIFELGGPNYTK  102 (301)
Q Consensus        25 ~~~~rRP~~~s~v~~l~~aekWR~~Ii~EIs~kv~~Iqd~~L~E~~IRDLNDeINkL~rEK~~WE~rI~eLGGpdY~~  102 (301)
                      .++.+||+++++|+||++|++||++||+|||+||++||||+||||+||||||+||+||+||+|||.||++||||||++
T Consensus         2 ~~~~rRP~~~~~v~~l~~aekwR~~iikEI~~kvs~Iqn~~L~e~~IRdLNDeINkL~reK~~WE~rI~eLGGpdY~r   79 (80)
T d1x4ta1           2 KVKERRPFLASECTELPKAEKWRRQIIGEISKKVAQIQNAGLGEFRIRDLNDEINKLLREKGHWEVRIKELGGPDYGK   79 (80)
T ss_dssp             SSCCCCCSCTTTCCCHHHHHHHHHHHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCCSTT
T ss_pred             CccccCCCCchhccCHHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCccc
Confidence            367899999999999999999999999999999999999999999999999999999999999999999999999986